BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780546|ref|YP_003064959.1| hypothetical protein
CLIBASIA_02165 [Candidatus Liberibacter asiaticus str. psy62]
         (423 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040223|gb|ACT57019.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/423 (100%), Positives = 423/423 (100%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH
Sbjct: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT
Sbjct: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF
Sbjct: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK
Sbjct: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG
Sbjct: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360
           CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR
Sbjct: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360

Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420
           KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL
Sbjct: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420

Query: 421 PFF 423
           PFF
Sbjct: 421 PFF 423


>gi|315122874|ref|YP_004063363.1| hypothetical protein CKC_05650 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496276|gb|ADR52875.1| hypothetical protein CKC_05650 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 448

 Score =  633 bits (1632), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 302/423 (71%), Positives = 363/423 (85%), Gaps = 1/423 (0%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFLSP+ESV+ FVRSLV PAHILVAVSGGSDS+GLLIALHS+LSD SF  IK SAISVDH
Sbjct: 1   MFLSPVESVKSFVRSLVCPAHILVAVSGGSDSIGLLIALHSILSDNSFRAIKISAISVDH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +R+ AKDEV+YV D+CSRL I H+VV WK+ KP+TGLMAAAR+ARYALI ++A  I AT
Sbjct: 61  GIRDEAKDEVKYVFDICSRLGIPHAVVVWKDQKPKTGLMAAARKARYALIVDYAMKIGAT 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           L++TAHTFDDQLETVYMRSQRDYAEKGMGLSG+ +T+LYD+ LWI+RPFL CRREDIRSF
Sbjct: 121 LVVTAHTFDDQLETVYMRSQRDYAEKGMGLSGIPETVLYDMRLWIARPFLCCRREDIRSF 180

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           LLQRNI WCEDPSN DDRFERVRVRR ++DID H +Y K++KF++LR+ VNN VA LIP+
Sbjct: 181 LLQRNIGWCEDPSNADDRFERVRVRRLIQDIDPHKMYRKIEKFRNLRIAVNNNVATLIPQ 240

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           YL VH +S+IA+S+++LNID  LL YLL+VS AICGG+ S PGYRSMERV+ +LK+ K+G
Sbjct: 241 YLKVHCQSVIALSENVLNIDLILLSYLLKVSIAICGGKTSFPGYRSMERVIAYLKNQKQG 300

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360
           C+SIGRVVIDRR NFLWITRAVR+LPT+ L+ +ET VWDGRY+F N S+  I+IG + Y 
Sbjct: 301 CISIGRVVIDRRVNFLWITRAVRDLPTVKLHFKETAVWDGRYRFTNSSNESIRIGAKVYN 360

Query: 361 KA-DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419
           K  D  SG+P I+AQRA SS+PS+EGG+P++APFSRF+T FDLPVA+A SISF KVFIP+
Sbjct: 361 KEMDFSSGMPSIVAQRAFSSLPSEEGGEPVIAPFSRFITIFDLPVAHAISISFDKVFIPQ 420

Query: 420 LPF 422
            PF
Sbjct: 421 SPF 423


>gi|332716440|ref|YP_004443906.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3]
 gi|325063125|gb|ADY66815.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3]
          Length = 445

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 162/440 (36%), Positives = 248/440 (56%), Gaps = 29/440 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++P+ + R FV +L  P HIL+A+SGGSDS GLL+A H   ++    +++ SA++VDH L
Sbjct: 13  VAPLAAARSFVENLRKPVHILIAISGGSDSTGLLLATHEARAEAGSDRVQLSAVTVDHAL 72

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  + DE   VS +C+ L I H+V  W + KP +G+  A+R ARY+LI+  A  I A L+
Sbjct: 73  RAESADEAHKVSLLCAELGIPHTVRRWDDPKPASGISEASRLARYSLIAGVASDIGADLV 132

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MT HT  DQ ETV MR+ R  + + +GL+GM D +LY    WI RPFL C R++IR F+L
Sbjct: 133 MTGHTLGDQRETVAMRAARSGSSENLGLAGMADAVLYGGRHWIMRPFLTCERQEIRDFVL 192

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            R+  W +DPSN + R+ERVRVR+ +       D  A  +K + + +         A  +
Sbjct: 193 SRSRGWFDDPSNDNARYERVRVRQSLSGSPPPFDAQA-AVKRQAYSE-------KTAFFL 244

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
            + + V   ++  +S + L  D     + L V  A  GG+   P   SM+RV+ FLK+G+
Sbjct: 245 QQNVEVFHATLARLSDEGLMPDLPEFRHGLAVLIANLGGRAYFPAASSMDRVLQFLKTGE 304

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358
            G +++GRV++DRR + L++ R  RN+P L +      +WD R+  +N S   + I    
Sbjct: 305 NGRITVGRVLLDRRKDGLYLFREHRNMPELQVEAGGQGLWDDRFLVKNTSAFPVNIAAGR 364

Query: 359 ----YRKADVPSGIPPIIAQRALSSMP----------SKEGG---KPLLAPFSRFMTKFD 401
                  A +   +PP IA++A++ +P          S EG     P LAPF  F+ +FD
Sbjct: 365 TGGIVDAAALFPAVPPGIAKQAMAILPQIATLVPPRASPEGAISIVPRLAPFDLFLPRFD 424

Query: 402 LPVAYAFSISFGKVFIPRLP 421
           L +A A ++ FG+   P+ P
Sbjct: 425 LELANAIAVLFGRAAYPQPP 444


>gi|15891237|ref|NP_356909.1| hypothetical protein Atu3711 [Agrobacterium tumefaciens str. C58]
 gi|61216678|sp|Q8U9L7|TILS_AGRT5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15159602|gb|AAK89694.1| Conserved Hypothetical Protein [Agrobacterium tumefaciens str. C58]
          Length = 443

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 165/436 (37%), Positives = 243/436 (55%), Gaps = 23/436 (5%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++P+ +   FV SL  P HILVA+SGGSDS GLL+AL    +    G ++ SA++VDH L
Sbjct: 13  VAPLAAASAFVESLRKPTHILVAISGGSDSTGLLLALQEAKAADDDG-LRLSAVTVDHAL 71

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  + DE R V+ +C+ L I H+   W   KP +GL  A+R ARY LI++ A+ I A L+
Sbjct: 72  RPESADEARKVAMLCAELGIPHTTRRWDGPKPASGLSEASRLARYRLIADVAREIGADLV 131

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           ++ HT  DQ ETV MR+ R      +GLSGM D +LYD +LWI RPFL C R+ IR ++ 
Sbjct: 132 VSGHTIGDQRETVAMRAARSGGSDNLGLSGMADAVLYDAHLWIMRPFLACERQVIRDYVS 191

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            R+  W +DPSN + R+ERVRVR+ +     H+           R  ++   A+ + +  
Sbjct: 192 SRSRHWLDDPSNENIRYERVRVRQTLP----HSPIALDDSTAVRRQMLSERTAVFLRERA 247

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
            V   ++  ++ D +N D     + L    A  GG+   P   SMERV+ FLK+G+ G +
Sbjct: 248 QVFHAALARLADDDVNPDLPEFRHGLAALIAALGGRSYFPAASSMERVLRFLKTGETGRM 307

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI-----QIGPQ 357
           ++GRV++DRR + L+I R  RNLP L +      VWD R+  +N SD  I     ++G  
Sbjct: 308 TVGRVLLDRRRDGLYIFREQRNLPELQIESSGQAVWDDRFLVKNGSDFPINVAAGRVGTA 367

Query: 358 SYRKADVPSGIPPIIAQRALSSMP----SKEGG--------KPLLAPFSRFMTKFDLPVA 405
           +   A  PS  P  + + A++ +P    + EG          P LAPF  F+ +FDL +A
Sbjct: 368 AQAAALFPSA-PSGVVKPAMAGLPQIAAAAEGWVSTPEVAITPRLAPFDLFLPRFDLELA 426

Query: 406 YAFSISFGKVFIPRLP 421
            A +  FG+   P+ P
Sbjct: 427 NAIANLFGRPAYPQPP 442


>gi|190893272|ref|YP_001979814.1| cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CIAT 652]
 gi|190698551|gb|ACE92636.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CIAT 652]
          Length = 458

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 238/455 (52%), Gaps = 47/455 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++R F+ SL  PA ILVA+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPHAAIRQFLLSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHGLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE + V+ +C+ L I H + +W+  KP+TG+MAAAREARY L++E A+   A LI+
Sbjct: 67  AGSADEAQQVAALCASLGIPHIIAAWQGEKPKTGIMAAAREARYELLAESAERFGANLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT+DDQ ET+ MR  R         SG+ D +L+D   WI RP L   R DIRSFL +
Sbjct: 127 TGHTYDDQRETLAMRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           R ++W +DPSN D ++ERVRVRR +      + D+ A + +       R+ +++A A  +
Sbjct: 183 RRVAWIDDPSNEDVKYERVRVRRQLSPDPATETDIRAAWKE-------RLALSSAAAEWL 235

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
            +Y T+    +  +  D L  D  +L Y L    A+ GGQ   PG   MER++LF    +
Sbjct: 236 DRYFTLQGGLLGQVLPDGLRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNE 295

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358
              +++GRVV D R + L++ R  R +  L L   E  VWDGR++  N S +  +I  Q 
Sbjct: 296 PRRMTVGRVVFDLRRDGLYLARESRGILPLTLRSGEAGVWDGRFEAANGSGATTRIEAQG 355

Query: 359 ----------------YRKADVPS-GIPPIIAQRALSSMPSKEGGK-------------- 387
                           +R     S G+P    +RA++S P   G +              
Sbjct: 356 AAARKDLGGARDSCDEHRNEGGESRGLPKAAWKRAVASAPVLSGEEVPLSPESIQAIHLT 415

Query: 388 PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
           P  APF RF+T+FD   A   S  F       +PF
Sbjct: 416 PYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGVPF 450


>gi|222086970|ref|YP_002545504.1| cell cycle protein MesJ/cytosine deaminase-related protein
           [Agrobacterium radiobacter K84]
 gi|221724418|gb|ACM27574.1| cell cycle protein MesJ/cytosine deaminase-related protein
           [Agrobacterium radiobacter K84]
          Length = 429

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 161/422 (38%), Positives = 234/422 (55%), Gaps = 16/422 (3%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           P  +   F+ SL  PAHILVA+SGGSDS GLL AL   L       +  SA ++DH LR 
Sbjct: 4   PEAAAADFIHSLFKPAHILVAISGGSDSTGLLAALAEHLKSLPNSDVTLSAATIDHGLRA 63

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            A +E R V+  C+ L IAH    W+  KP++G+MAAAREARY L++E +  I+A +I+T
Sbjct: 64  EAAEEAREVAAFCASLGIAHVARRWEGEKPKSGIMAAAREARYGLLAEISAEISANVIVT 123

Query: 125 AHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           AHT DDQ ET+ MR+ R +  E G G +G+ + +L+D  +WI+RPFL CRR DIR++L  
Sbjct: 124 AHTIDDQRETLAMRTARLNEGEAGAG-TGISEAMLFDRRIWIARPFLACRRADIRAYLNG 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R +SW  DPSN D R+ER+R R+ +                  R  ++   A  + +++ 
Sbjct: 183 RGMSWLNDPSNEDVRYERIRTRKSLLQ---EPALFPAPDAAAARAALSADAAAWLGEHVA 239

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           VH   + AIS+  L+ D  ++ Y L   AA+ GG+   PG   M R++ F+  G+ G  +
Sbjct: 240 VHAGVLCAISRKALSADEGVIAYALSYLAAVFGGEPYGPGRERMRRILDFIGEGRPGRRT 299

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA- 362
            G VV D R + L++ R  R++  L+L      +WDGR+Q  N   + I +       A 
Sbjct: 300 AGGVVFDLRRDGLYLMRESRDIRPLVLAAGADGIWDGRFQIGNHGAAAICVEATGTTGAM 359

Query: 363 DVPSGIPPIIAQRALSSMP----SKEGG------KPLLAPFSRFMTKFDLPVAYAFSISF 412
           + P G+P    QRA + +P      EG        P LAPF RF+T+F+L  A   +   
Sbjct: 360 EFPEGLPKGAVQRAGAVLPKVVAGDEGAAASVTIAPYLAPFDRFLTRFNLTFANRLAACL 419

Query: 413 GK 414
           G+
Sbjct: 420 GR 421


>gi|327193463|gb|EGE60359.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CNPAF512]
          Length = 501

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 166/483 (34%), Positives = 240/483 (49%), Gaps = 75/483 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++R F+ SL  PA ILVA+SGGSDS GLL+ L   +      K    A +VDH LR
Sbjct: 7   SPHAAIRQFLLSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKASLCAATVDHGLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE + V+ +C+ L I H + +W+  KP+TG+MAAAR+ARY L++E A+   A LI+
Sbjct: 67  AGSADEAQQVAALCASLGIPHIIAAWQGEKPKTGIMAAARKARYELLAESAERFGANLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT+DDQ ET+ MR  R         SG+ D +L+D   WI RP L   R DIRSFL +
Sbjct: 127 TGHTYDDQCETLAMRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           R ++W +DPSN D ++ERVRVRR +      + D+ A + +       R+ +++A A  +
Sbjct: 183 RRVAWIDDPSNEDVKYERVRVRRQLSADPATETDIRAAWKE-------RLALSSAAAEWL 235

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
            ++  +    +  +  D L  D  +L Y L    A+ GGQ   PG   MER++LF    +
Sbjct: 236 DRHFRLQGGLLGQVLPDGLRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNE 295

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358
              +++GRVV D R + L++ R  R +  L L P E  VWDGR++  N S + I+I  Q 
Sbjct: 296 PRRMTVGRVVFDLRRDGLYLARESRGILPLTLRPGEAGVWDGRFEAANGSGATIRIEAQG 355

Query: 359 YRKADVPS---------------------------------------------GIPPIIA 373
            R + +P+                                             G+P    
Sbjct: 356 ARSSPIPAPVTGIQPPRVGAVNDSTVPDESAARKDLGARDSCDERRNEGGESRGLPKAAW 415

Query: 374 QRALSSMPSKEGGK--------------PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419
           +RA++S P   G +              P  APF RF+T+FD   A   S  F       
Sbjct: 416 KRAVASAPVLSGEEVPLSPESIQAINLTPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAG 475

Query: 420 LPF 422
           LPF
Sbjct: 476 LPF 478


>gi|218461257|ref|ZP_03501348.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli Kim 5]
          Length = 493

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 170/485 (35%), Positives = 239/485 (49%), Gaps = 72/485 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++  F+ SL  PA ILVA+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPHAAILQFLASLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHRLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE + V+ +C+ L I H + +W+  KP+TG+MAAAREARY L++E A+ + A LI 
Sbjct: 67  AGSADEAQQVAALCASLGIPHIIAAWQGDKPKTGVMAAAREARYDLLAESAERLGANLIA 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT DDQ ET+ MR  R         SG+ D +L++   WI RP L   R DIR+FL +
Sbjct: 127 TGHTLDDQRETLQMRGMRTEQVS----SGIADAVLFNRRFWILRPLLFSSRADIRAFLRE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R + W EDPSN D ++ERVR+RR  R     A+   ++   + R  +++  A  + ++  
Sbjct: 183 RGVPWIEDPSNEDVKYERVRIRR--RLSADPAMETDIRAAWEARRALSSRAADWLDRHFR 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +H   +  +S D L  D  +L Y L    A+ GGQ  +PG   M R++ F   G+ G ++
Sbjct: 241 LHGGLLGQVSVDGLRQDRAVLDYALGRLTAVFGGQPFVPGRAQMARLLSFATGGEPGRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358
           IGRVV DRR + L+ TR  R +  +IL P E  VWDGR++  N S   + I  Q+     
Sbjct: 301 IGRVVFDRRRDGLYFTRESRGIVPMILRPGEAGVWDGRFEAVNGSGETVTIKAQATHYSL 360

Query: 359 ------YRKADVPSGIPPIIA--------------------------------------- 373
                  R  DV   +PP +                                        
Sbjct: 361 IPVSSGLRPRDVTGILPPRVGAVDDSTKQGESSAPKDLGALDSCDEHRNEGEWSRGLPKA 420

Query: 374 --QRALSSMPS-KEGGKPL-------------LAPFSRFMTKFDLPVAYAFSISFGKVFI 417
             +RA++S P+    G PL              APF RF+T+FD   A   S  F     
Sbjct: 421 AWKRAVASAPAFAVDGHPLSLQSVGSIHLTPYFAPFDRFLTRFDFIFADRLSAVFAMAPY 480

Query: 418 PRLPF 422
             LPF
Sbjct: 481 AGLPF 485


>gi|227823305|ref|YP_002827277.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
 gi|227342306|gb|ACP26524.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
          Length = 445

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 224/434 (51%), Gaps = 22/434 (5%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I + R F+RS + P  ILVA+SGGSDS GLL+ALH+ L    F      A +VDH LR  
Sbjct: 6   IAAARRFLRSFIKPGRILVAISGGSDSKGLLVALHAALGTADFEGFSLVACTVDHALRSD 65

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + DE   V   C+ L I H V  W   KP+ G+ AAAR  RY +++E A    A  I T 
Sbjct: 66  SADEAAAVGAFCAGLGIPHQVCRWPGDKPRAGIQAAARLKRYDMLAEAAAVFRADCIATG 125

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ET+ MR  RD  + G G +GM   +LY    W+ RPFL  RR DIR++L  R 
Sbjct: 126 HTLDDQNETIAMRGARDQGQ-GHGSAGMAAAMLYGRRTWVLRPFLGLRRADIRAYLGGRG 184

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I W +DPSN +  FER RVR     +    +    ++   LR+  +   A+L+ ++L VH
Sbjct: 185 IGWFDDPSNENPLFERARVR---ASLAASGVAPPPRRGGQLRMASSARAAVLLGEHLRVH 241

Query: 246 MRSIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
              +  + +     ID       L    A+ GG+  LPG  ++ER+  FL+SG+ G ++ 
Sbjct: 242 EGLVAEVAAAQAGRIDDPDWRRALMTVGAVIGGREHLPGRATIERLSGFLRSGEAGRMTA 301

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI---QIGPQSYRK 361
           GRVV DRR + L++ R  RNLP L +   E+  WDGR+   ++  +L    +     +R+
Sbjct: 302 GRVVFDRRRSGLYLYREPRNLPALRIGANESGTWDGRFNITSVGTALTICAEAEGGVWRQ 361

Query: 362 ADVPSGIPPIIAQRA--------------LSSMPSKEGGKPLLAPFSRFMTKFDLPVAYA 407
               +G+P  +A+RA              L S  ++   +  + P+  F+  FD  +A  
Sbjct: 362 RLFAAGLPEGVAKRASLVAPRVAPEDVGSLGSTAAEAKVECRIGPYDTFLPGFDRIMADT 421

Query: 408 FSISFGKVFIPRLP 421
             + FG+   P  P
Sbjct: 422 IGLLFGRDRYPAPP 435


>gi|241206181|ref|YP_002977277.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860071|gb|ACS57738.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 491

 Score =  262 bits (669), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 170/483 (35%), Positives = 238/483 (49%), Gaps = 70/483 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++  F+ SL  PA ILVA+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPQLAILQFLTSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLYAATVDHALR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE R V+ +C+ L IAH+++ W+  KP+TG+MAAAREARY L++  AK   A LI+
Sbjct: 67  AGSADEAREVAALCASLGIAHTIMIWQGDKPKTGIMAAAREARYGLLATAAKEFKADLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HTFDDQ ET+ MR  R         +G+ D +L+D + WI RP L   R DIR+FL +
Sbjct: 127 TGHTFDDQRETLQMRGMRTEQVS----TGIADAVLFDRSFWILRPLLFSTRADIRAFLKE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R + W +DPSN D  +ERVR+RR +  +D   +   ++   + R  +++  A  + ++  
Sbjct: 183 RGVPWIDDPSNEDTTYERVRMRRQL-SVD-AGVERTIQAACEERPALSSKGAEWLDRHFR 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +H   +  +  D L  D  +L Y L   AA+ GGQ   PG   MERV+ F+   + G ++
Sbjct: 241 LHGGLLGQVMPDGLRQDRAVLNYALGRLAAVFGGQPFAPGRVQMERVLAFVTGSEPGRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI--------- 354
            GRVV D R + L++ R  R +  L+L P E  VWDGR+  +N   + I +         
Sbjct: 301 AGRVVFDLRRDGLYLARESRGILPLLLQPGEAGVWDGRFYARNGLSTSIAVEAATLYAPS 360

Query: 355 ---------------GPQSYRKADVPSGIPPIIAQ------------------------- 374
                           P+S    D    I  I AQ                         
Sbjct: 361 FLSSDLTRELSEESSAPKSLGANDTSRFIESITAQTRGGWIPVTSTGMRGRMHHLPKAAW 420

Query: 375 -RALSSMP--SKEGG------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419
            RA++S P  S EG              P  APF RF+T+FD   A   S  F      R
Sbjct: 421 KRAVASAPVLSAEGNLLTEECARMVELTPYFAPFDRFLTRFDFIFANRLSAVFATAPYAR 480

Query: 420 LPF 422
           LP 
Sbjct: 481 LPL 483


>gi|222149666|ref|YP_002550623.1| hypothetical protein Avi_3626 [Agrobacterium vitis S4]
 gi|221736648|gb|ACM37611.1| Conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 454

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 136/423 (32%), Positives = 228/423 (53%), Gaps = 19/423 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +SP  ++  F+  +  P  +LVA+SGGSDS GLL+ALH  L       +   A ++DH L
Sbjct: 28  ISPEAAIAAFLDRINDPLRLLVAISGGSDSTGLLLALHEQLQAMPAKTVTLHAATIDHGL 87

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R+ +  E   V+ +C+ L I H +  W   KP+TG+ AAAR ARY L++E AK I+A  I
Sbjct: 88  RDGSAAEAETVAALCATLGIPHEIRRWTGDKPKTGISAAARAARYQLLAEIAKEIDAAAI 147

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT DDQ+ET+ MR +R    +  GL+GM +++L++ ++WI+RP LR RR+ IR FL 
Sbjct: 148 LTGHTADDQIETIAMREKRSRNPRATGLAGMAESVLFENSIWITRPLLRSRRQAIRVFLQ 207

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            R   W +DPSN +  +ER R+R  +       L       Q+ R+ ++   A L+  + 
Sbjct: 208 DRGHGWVDDPSNDNPAYERARIRAHLSTDQQPGLP------QNERLSLSQGAAALVSTHA 261

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
           T+ +  ++ +   +      +L + L+   A  GGQ   PG  ++ R++   +      V
Sbjct: 262 TMPLPGLVDLDNALFEAPRPILCHALQALIATVGGQPHGPGQDALVRLIALCEQPPGARV 321

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR-- 360
           ++GR +  R  + +++ R  RNLP  I+ P ET +WDGR+   N+  +  ++ P   +  
Sbjct: 322 TLGRCLAHRHRHGIYLVREGRNLPHGIVKPGETVLWDGRWHISNIGRAESRVQPGETKTD 381

Query: 361 -------KADVPSGIPPI----IAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFS 409
                   + +P+   P+    +A+++L  +       P++AP+  F+  FD P+A A +
Sbjct: 382 QTSPTLATSPLPASSLPVSLAALARQSLPGIGPNLHATPVIAPYQGFLPGFDWPLAVALA 441

Query: 410 ISF 412
             F
Sbjct: 442 GLF 444


>gi|116253706|ref|YP_769544.1| tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258354|emb|CAK09456.1| putative tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 485

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 166/477 (34%), Positives = 237/477 (49%), Gaps = 64/477 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++  F+ SL  PA IL A+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPQLTILQFLTSLQSPARILAAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHALR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE R V+ +C+ L I H+ + W+  KP+TG+MAAAREARY L+   A++  A LI+
Sbjct: 67  AGSADEARDVAALCASLGIPHTTMIWEGDKPKTGIMAAAREARYGLLETAAESFEADLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HTFDDQ ET+ MR  R         +G+ D +L++   WI RP L   R DIR+FL +
Sbjct: 127 TGHTFDDQRETLQMRGMRTEQIS----TGIADAVLFNRRFWILRPLLFSSRADIRAFLKE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R + W +DPSN D ++ERVR+RR + D     +   +    + R+ +++  A  + ++  
Sbjct: 183 RGVPWIDDPSNEDIKYERVRMRRQLSDD--AGMEKDIGAAWEERLALSSRGAEWLDRHFR 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +H   +  +  D L  D  +L Y+L   AA+CGGQ  +PG   MERV+ F      G ++
Sbjct: 241 LHGGLLGQVIPDGLRQDRAVLDYVLARLAAVCGGQPFVPGRAQMERVLTFATGTGLGRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN-LSDSLI---------- 352
            GRVV D R + L++ R  R +  L+L P E  VWDGR+  +N LS S++          
Sbjct: 301 AGRVVFDLRRDGLYLARESRGILPLVLQPGEAGVWDGRFYARNGLSTSIVVEAATLYAPS 360

Query: 353 -------QIGPQSYRKADVPSGIPPIIAQ--------------------------RALSS 379
                      +S    D    I  I AQ                          RA++S
Sbjct: 361 FLCLSQESSASKSLGAKDTSRFIGSITAQTRGGWIPVTSTGMRERMHHLPKAAWKRAVAS 420

Query: 380 MPS---------KEGGK-----PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
            P+         +E  +     P  APF RF+T+FD   A   S  F      RLP 
Sbjct: 421 APALTSEEAPLFEESARMVELTPYFAPFDRFLTRFDFIFANRLSAVFATAPYARLPL 477


>gi|218674235|ref|ZP_03523904.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli GR56]
          Length = 486

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 245/473 (51%), Gaps = 75/473 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++  F+ SL  PA ILVA+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPQAAILQFLESLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHGLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE R V+ +C+ L I H + +W+  KP+TG+MAAAREARY L++E A+ + A LI+
Sbjct: 67  AGSADEARQVAALCASLGIPHIIAAWQGEKPKTGIMAAAREARYDLLAESAERLGAKLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT DDQ ET+ MR  R         SG+ D +L+D   WI RP L   R +IR+FL +
Sbjct: 127 TGHTLDDQRETLLMRGMRTEQRS----SGIADAVLFDRRFWILRPLLFSSRANIRAFLRE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           R+++W +DPSN D ++ERVRVRR +      ++D+HA +       + R+ +++A A  +
Sbjct: 183 RDVAWIDDPSNEDVKYERVRVRRQLSADRATEMDIHAAW-------EARLALSSAAAEWL 235

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
            ++  +H   +  +S D L  D  +L Y L    A+ GGQ  +PG   MER++ F+  G+
Sbjct: 236 DRHFRLHGGLLGQVSVDGLRQDRAVLDYALGRLTAVFGGQPFVPGRAQMERLLSFVTGGE 295

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS---------- 348
            G +++GRVV D R + L+++R  R +  L+L P    VWDGR++  N S          
Sbjct: 296 PGRMTVGRVVFDLRRDGLYLSRESRGILPLVLRPGVAGVWDGRFRVCNGSAVNARMEALA 355

Query: 349 --DSLIQI---GPQSYR------------------------------KADVPSGIPPIIA 373
              SLI +   G Q  R                              K     G+P    
Sbjct: 356 GLSSLIPVLVTGIQPPRVGAVNDSTKQDESSAPNDLGAEDSCDEHRNKGGEGRGLPKAAW 415

Query: 374 QRALSSMPS-KEGGKPL-------------LAPFSRFMTKFDLPVAYAFSISF 412
           +RA++S P+    G PL              APF RF+T+FD   A   S  F
Sbjct: 416 KRAVASAPAFSVDGHPLSPESVGSIRLAPYFAPFDRFLTRFDFIFADRLSAVF 468


>gi|86359050|ref|YP_470942.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CFN 42]
 gi|86283152|gb|ABC92215.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CFN 42]
          Length = 486

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 239/478 (50%), Gaps = 65/478 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP E++  F+ SL  PA ILVA+SGGSDS GLL+ L   +      ++   A +VDH LR
Sbjct: 7   SPREAIVQFLTSLQSPACILVAISGGSDSTGLLLLLAEAMKAAPDLEMSLCAATVDHGLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE R V+ +C+ L I H +  W+  KP+TG+MAAAREARY+L+++ A+ + A LI+
Sbjct: 67  AGSADEAREVAALCASLGIPHMIARWQGEKPKTGIMAAAREARYSLLADAAEALGANLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT DDQ ET+ MR  R         SG+ D +L+D  LWI RP L   R DIR+FL  
Sbjct: 127 TGHTLDDQRETLRMRGMRTEQLS----SGIADAVLFDRRLWILRPLLFATRADIRAFLRA 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R + W +DPSN D R+ERVR RR +      A+   ++   + R+ +++     + ++  
Sbjct: 183 RGVRWIDDPSNEDIRYERVRTRRQLSAGP--AMPTDIRAVWEERLTLSSRAGEWLDRHFQ 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +H   +  +  + L  D  +L Y L    A+ GGQ  +PG   M+R++ F      G ++
Sbjct: 241 LHGGVLGQVMPEGLRQDRAVLDYTLGRLTAVFGGQPFVPGRVQMDRILAFASGSGLGRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
            GRVV D R + L++ R  R +  L+L P E  VWDGR++ +N   + I +  Q+ R + 
Sbjct: 301 AGRVVFDLRRDGLYLARENRGIMPLVLRPGEAGVWDGRFRVENRLGTTISVEAQTTRSSL 360

Query: 364 VP---SGI-PPIIA-----------------------------------------QRALS 378
           +P   +GI PP +                                          +RA++
Sbjct: 361 IPVPVTGIQPPRVGAVNDSSMRNESCAPKNFGALNSCDKHRNEGGWGKHLPKAAWKRAIA 420

Query: 379 SMP--SKEGG------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
           S P  S +G              P  APF RF+T+FD   A   S  F       LP 
Sbjct: 421 SAPALSSDGAYLSSKSALTAELTPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGLPL 478


>gi|209550773|ref|YP_002282690.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536529|gb|ACI56464.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 492

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/390 (39%), Positives = 224/390 (57%), Gaps = 13/390 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP E++  F+ SL  P  ILVA+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPREAILQFLSSLQSPVRILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHALR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE R V+ +C+ L IAH++++W+  KP TG+MAAAREARY+L++E A+ + A LI+
Sbjct: 67  AGSADEAREVAALCASLGIAHAIMTWQGDKPITGIMAAAREARYSLLAEAAEALGADLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAHT DDQ ET+ MR  R         +G+ D +L+D + WI RP L   R DIR+FL +
Sbjct: 127 TAHTLDDQRETLAMRGMRTEEVS----TGIADAVLFDRHFWILRPLLFSSRADIRAFLSE 182

Query: 184 RNISWCEDPSNTDDRFERVRVR-RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +   W +DPSN D ++ERVR+R +   D    A    +    D R+ V+   A  +  + 
Sbjct: 183 QGAGWIDDPSNEDVKYERVRIRQQLSADGGAEA---NISAVWDERLAVSAKGAEWLDHHF 239

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
            +H   +  +  + L  D  +L Y+L    A+ GGQ   PG   MER++ F   G+   +
Sbjct: 240 KLHGGLLGQVMPEGLRQDRAVLDYVLGRLTAVFGGQPFAPGRAQMERLVAFAAGGEPARM 299

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362
           ++GRVV D R + L++TR  R +  L+L P E  VWDGR++  N S   ++I  QS R +
Sbjct: 300 TVGRVVFDLRRDGLYLTRESRGILPLVLQPGEAGVWDGRFEAVNRSAIDVRIEAQSGRSS 359

Query: 363 DVP---SGI-PPIIAQRALSSMPSKEGGKP 388
            +P   +GI PP +     S++P KE   P
Sbjct: 360 LIPVLVTGIQPPRVGAVNDSTIP-KESPAP 388


>gi|15966489|ref|NP_386842.1| hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
 gi|307300474|ref|ZP_07580254.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C]
 gi|307318339|ref|ZP_07597774.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83]
 gi|61216708|sp|Q92JY3|TILS_RHIME RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15075760|emb|CAC47315.1| Hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
 gi|306896021|gb|EFN26772.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83]
 gi|306904640|gb|EFN35224.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C]
          Length = 453

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 161/444 (36%), Positives = 231/444 (52%), Gaps = 34/444 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++ R F+RS + P  ILVAVSGGSDSMGLL+ALHS ++         +A +VDH LR  
Sbjct: 6   LDTARNFLRSFITPRRILVAVSGGSDSMGLLVALHSAIAADERRGFSLAACTVDHALRPQ 65

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +  E   V+  C+ L IAH +  W+ +KP TG+ AAAR  RY L++E A  + A  I   
Sbjct: 66  SACEAEDVAAFCAALGIAHRICRWEGAKPSTGIQAAARNKRYELLAEAADALGADCIAIG 125

Query: 126 HTFDDQLETVYMRSQRDYAEKGMG----------LSGMCDTILYDLNLWISRPFLRCRRE 175
           HT DDQ ETV MR  R    KG G           +GM  ++LY   +W+ RPFL   R 
Sbjct: 126 HTRDDQQETVAMRIARG---KGDGAGDGQGEGHGGAGMAASMLYGRRIWVLRPFLGLARA 182

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +IRSFL  R +SW +DPSN +  FERVRVR  +         L   +    R   +   A
Sbjct: 183 EIRSFLQARGVSWIDDPSNANPAFERVRVRARIATSGGMPTPLGNGR---QRAASSARAA 239

Query: 236 MLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
            LI K + VH   +  +S +    ID       L   A++ GG+  +P + +++R+  FL
Sbjct: 240 ALIEKRIRVHEALVAEVSARHAGEIDDPDWRRALLTVASVLGGREHMPAFATVQRLSQFL 299

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
           +SG+ G ++ GRVV DRRA+ L++ R  RNLP L + P     WDGR+  ++   ++   
Sbjct: 300 RSGEPGRMTAGRVVFDRRASGLYLYREARNLPVLAVGPGRQGAWDGRFTVKSRGPAVTVA 359

Query: 355 GPQSYR---KADVPSGIPPIIAQRALSSMP---SKEGGKPLL--AP---------FSRFM 397
              S R   K  + +G+P  IA+R  +  P   S +G       AP         +  F+
Sbjct: 360 ADASGRLWTKRLIDAGLPAGIAKRGSTVAPEIASTDGAGLAFGEAPAQVEYHIGLYDTFL 419

Query: 398 TKFDLPVAYAFSISFGKVFIPRLP 421
             FD  +A A ++SFG+   P  P
Sbjct: 420 PGFDRIMADAVAVSFGRDRYPAPP 443


>gi|150397822|ref|YP_001328289.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium medicae WSM419]
 gi|150029337|gb|ABR61454.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium medicae WSM419]
          Length = 453

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 238/441 (53%), Gaps = 30/441 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++  +F+RS   P  ILVAVSGGSDSMG+L+ALH+ ++         +A +VDH LR  +
Sbjct: 7   DTASYFLRSFTRPCRILVAVSGGSDSMGVLMALHAAIATGEHPGFSLAACTVDHALRPQS 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +E   V+  C  L IAH    W+ +KP TG+ AAAR+ RY L++  A+ + A  I+T H
Sbjct: 67  AEEAASVAAFCRTLDIAHRTRRWEGAKPATGIQAAARKIRYELLAVAAEALGADCIVTGH 126

Query: 127 TFDDQLETVYMRSQR-------DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +DQ ET+ MR  R       D   +G G +GM  T+LY   +W+ RPFLR  R +IRS
Sbjct: 127 TREDQHETIEMRRARSNGPGIDDGEGEGHGGAGMAATMLYGRRVWVLRPFLRLGRAEIRS 186

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR-RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           FL  R ++W +DPSN +  FERVRVR R     D+       ++    R   + A A LI
Sbjct: 187 FLDARAVAWIDDPSNANHAFERVRVRARIAASDDMQMPLWGGRQ----RAASSAAAAGLI 242

Query: 239 PKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
              + VH   +  I+ ++    D       L + A+  GG+  LP   +++R+  FL++G
Sbjct: 243 EDRIRVHEALVAEITAENAGATDDPDWRRALLIVASALGGRDHLPARATVQRLSEFLRAG 302

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           K G ++ GRVV DRRA  L++ R  RNLP L L P    +WDGR++  +   +L+     
Sbjct: 303 KPGRMTAGRVVFDRRAGGLYLYREARNLPVLALGPGGQGLWDGRFKITSGGPALVVTADA 362

Query: 358 SYRKAD---VPSGIPPIIAQRALSSMPS-----KEG---GKPL------LAPFSRFMTKF 400
           S R++    + +G+P  I +RA +  P        G   G+ L      +APF  F+  F
Sbjct: 363 SGRRSAQRLIDAGLPMGIVKRASTVAPGIAPADAAGIAYGEALAEIEYNIAPFDTFLPGF 422

Query: 401 DLPVAYAFSISFGKVFIPRLP 421
           D  +A A ++SFG+   P  P
Sbjct: 423 DRIMADAVAVSFGRERYPAPP 443


>gi|319781030|ref|YP_004140506.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166918|gb|ADV10456.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 457

 Score =  216 bits (550), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 148/437 (33%), Positives = 218/437 (49%), Gaps = 35/437 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           + +  + AVSGGSDS  LL+ L     DR     K  A+++DH LR  +  E + V+ +C
Sbjct: 18  FTSGAVAAVSGGSDSTALLLLL-KHHLDRRAPATKLLAVTIDHGLRSGSAAEAQTVAKLC 76

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +RL I+H +++W   KP TGL AAAREARY L++E A+     +I+T HT DDQ ETV M
Sbjct: 77  ARLGISHRILTWSGPKPSTGLPAAAREARYRLLAEAAQAEGIGMILTGHTADDQAETVLM 136

Query: 138 RSQRDYAE-----KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           R  RD  +      G GL+GM    LYD  +WI RP L  RR  +R  L ++N+ W +DP
Sbjct: 137 RHARDAGQGHAGMAGRGLAGMAPATLYDWRIWIVRPLLGVRRAVLRDVLRRQNVGWADDP 196

Query: 193 SNTDDRFERVRVRRFVRDIDL-HALYLKMKKFQDL--RVKVNNAVAMLIPKYLTVHMRSI 249
           +N D  FER RVR  +    + H   + M   Q    R ++  +   LI  + +     +
Sbjct: 197 TNVDAAFERPRVRAALAGESVEHVKGMLMLAGQAALERRQLGASATDLIDGFASQPAIGL 256

Query: 250 IAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
           I +   +L+  D     Y LR+  A  GG   LP     E +   L++G   C ++ R V
Sbjct: 257 ICLDPCLLSSGDEQAAIYALRILLATTGGIAFLPDEARSEALFGRLRAGFL-CATLSRTV 315

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIGP----QSYRKAD 363
           +D R + +++ R  R LP        +T+WDGR     N S S + I P     + R A 
Sbjct: 316 VDSRRSGIFLRREARGLPAAAAA-TGSTLWDGRRHITLNDSSSALLIAPLGAAAAKRLAT 374

Query: 364 VPSGIPPIIAQRALSSMPS--KEG----------------GKPLLAPFSRFMTKFDLPVA 405
                P  + + AL++ P+  + G                 +P++APF RF+  FDL +A
Sbjct: 375 GEGKTPSSLMRAALAAEPAVWQAGECLGLPGYGLKSATVEARPVVAPFGRFLPSFDLALA 434

Query: 406 YAFSISFGKVFIPRLPF 422
            A +   G   +P LPF
Sbjct: 435 RAVAGLIGAAPVPPLPF 451


>gi|260467069|ref|ZP_05813249.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259029178|gb|EEW30474.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 455

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 154/452 (34%), Positives = 227/452 (50%), Gaps = 40/452 (8%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
            P  S R F   + +    + AVSGGSDS  LL+ L     DRS    K  A+++DH LR
Sbjct: 5   GPDLSTRLFSH-IDFTNGAVAAVSGGSDSTALLLLL-KHHLDRSAPSAKLLAVTIDHGLR 62

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           + +  E + V+ +C+   IAH  + W   KP TGL AAAREARY L++  A+     LI+
Sbjct: 63  QDSAAEAQAVAKLCAERGIAHRTMIWSGRKPSTGLPAAAREARYRLLASAARAEGIGLIV 122

Query: 124 TAHTFDDQLETVYMRSQRDYA---EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T HT DDQ ETV MR  RD +    +G GL+GM    LYD   WI RP L  RR  +R F
Sbjct: 123 TGHTADDQAETVLMRHARDGSLGHVQGRGLAGMAPATLYDWREWIVRPLLGTRRAALRDF 182

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRF-----VRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           L  +++ W EDP+N+D+ FER RVR       VR +D  AL L  +   + R ++    A
Sbjct: 183 LQSKHVGWAEDPTNSDESFERPRVRAALAGDNVRRMD-EALVLASQAAIE-RGQLGLDAA 240

Query: 236 MLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
            LI ++ +     ++ +   + +  D     Y LR+  A  GG   LP     E +   L
Sbjct: 241 DLIRRFASQPATGLVRLDPQLRSTGDERAAIYALRILLATVGGLAFLPDQARGEVLFGRL 300

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS---- 350
           K+G   C ++ R V+D R   +++ R  R LP       + T+WDGR     L+DS    
Sbjct: 301 KAGFL-CATLSRTVVDFRRAGIFLRREARGLPPAAAA-IDNTIWDGRRHI-TLNDSSAGL 357

Query: 351 -LIQIGPQSYRKADVPSG-IPPIIAQRALSSMPSK----------EG--------GKPLL 390
            +  +G  + ++  + +G  P  + + AL++ P+           +G         +P++
Sbjct: 358 LIAPLGAAAAKRLPIDAGETPASLMRAALAAEPTSRQAFENPDVPQGEPASPGFDARPVV 417

Query: 391 APFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
           APF+RF+  FDL  A A +   G   +P LPF
Sbjct: 418 APFARFLPSFDLAPARAIAGLIGAPSLPALPF 449


>gi|13473327|ref|NP_104894.1| hypothetical protein mll3884 [Mesorhizobium loti MAFF303099]
 gi|61216717|sp|Q98F87|TILS_RHILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|14024076|dbj|BAB50680.1| mll3884 [Mesorhizobium loti MAFF303099]
          Length = 454

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 210/442 (47%), Gaps = 58/442 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           + AVSGGSDS  LL+ L     DR+    K  A+++DH LR+ +  E + V+ +C+   I
Sbjct: 23  VAAVSGGSDSTALLLLLKHHF-DRTGSSAKLLAVTIDHGLRQGSAAEAQAVAKLCAERGI 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           AH  ++W   KP TGL AAAR+ARY L++E A+     LI+T HT DDQ ETV MR  RD
Sbjct: 82  AHRTLTWTGRKPSTGLPAAARDARYHLLAEAARAEGIGLIVTGHTADDQAETVLMRHARD 141

Query: 143 --YAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
              A+  G GL+GM    LYD   WI RP L  RR  +R FL + ++ W EDP+N D+ F
Sbjct: 142 RELADLAGRGLAGMAPATLYDWREWIVRPLLGTRRSALRDFLRREHVGWAEDPTNIDEAF 201

Query: 200 ERVRVRRFVRDIDLHALYLKMK---KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           ER RVR  +       +   ++   +    R ++  + A LI +  +     +I +   +
Sbjct: 202 ERPRVRAALAGESAGHMENTLRLAGQAAVERGQLGASAANLIRRIASQPSTGLIRLDPAL 261

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L  D     Y LR+  A  GG   LP       + + LK+G   C ++ R V+D R   L
Sbjct: 262 LIADDQAAIYALRILLATAGGAAFLPDQARSAALFVRLKAGFL-CATLSRTVVDFRHAGL 320

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQ--FQNLSDSLIQIGP------------------ 356
           ++ R  R LP       + T+WDGR      ++S +L+ I P                  
Sbjct: 321 FLRREARGLPPAATA-VDNTIWDGRRHITLNDMSGALL-IAPLGAAAARRLAIDDGETPA 378

Query: 357 --------------QSYRKADVPSGIP--PIIAQRALSSMPSKEGGKPLLAPFSRFMTKF 400
                         Q++    +P G P  P+ A R            P+++PF+RF+  F
Sbjct: 379 SLIRAALAAEPTLLQAFENLGLPQGEPRLPVFAAR------------PVVSPFARFLPSF 426

Query: 401 DLPVAYAFSISFGKVFIPRLPF 422
           DL  A A +   G   +P  P 
Sbjct: 427 DLAPARAVAELIGASPLPASPL 448


>gi|163758787|ref|ZP_02165874.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43]
 gi|162284077|gb|EDQ34361.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43]
          Length = 444

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/428 (31%), Positives = 201/428 (46%), Gaps = 58/428 (13%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VAVSGGSDS+GLL+ +      RS    +  A++VDH LR  + DE R V  +C RL + 
Sbjct: 35  VAVSGGSDSLGLLLGMA-----RSVPPKQLVALTVDHGLRSGSADEARTVKRICRRLGVR 89

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H  + WK  KP +GL A AREARY L+S+ A  +    I+T HT DDQ ET+ MR  R  
Sbjct: 90  HETLLWKGEKPVSGLQAKAREARYHLLSDAASRLGLAAILTGHTSDDQAETLTMRRTRGL 149

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
            +   GL G+    L+D   W+ RP L   R  IR +L    + W EDPSN D RFERVR
Sbjct: 150 RDDAPGLIGIPQASLFDGRSWVLRPLLGVDRASIRRYLAMAGVGWIEDPSNLDVRFERVR 209

Query: 204 VRRFVRDIDLHALYLK----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD---I 256
           VR   + ++  A+  K      +    RV++    A  + +   V       ++ D    
Sbjct: 210 VR---KGLEAQAMVSKSSDEASRAIASRVRIALEAAAFVDQACGVQRDGTWRVALDGRGA 266

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRAN 314
             ++   L  L+RV    CGG  + P  R  +  +    SG++    +++GR +I R   
Sbjct: 267 GEVEIAALEALIRV----CGGA-ARPLDRRGKLALHGFVSGRQAGSALAVGRTLIKRDVA 321

Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ 374
              + R  R L  L++ P ++  WD R++  NL            R +D+      ++A 
Sbjct: 322 GFVLMRERRGLEELVIAPGQSGDWDRRFRITNLD-----------RHSDL-----RVVAD 365

Query: 375 RALSSMP-------------SKEGG-------KPLLAPFSRFMTKFDLPVAYAFSISFGK 414
              ++MP             S  GG       K L+  FSR +  ++LP+A A +   G 
Sbjct: 366 HTATAMPLFSRDFKAGSRSWSPAGGICGGFLVKRLVGGFSRVLPVYELPLAQALARLTGG 425

Query: 415 VFIPRLPF 422
              P  P+
Sbjct: 426 AAFPACPW 433


>gi|110635497|ref|YP_675705.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium sp. BNC1]
 gi|110286481|gb|ABG64540.1| tRNA(Ile)-lysidine synthetase [Chelativorans sp. BNC1]
          Length = 446

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 135/425 (31%), Positives = 206/425 (48%), Gaps = 35/425 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++ AVSGG DS+ LL  L   L  +  G     A++VDH LR  +  E R V ++ +   
Sbjct: 25  VVAAVSGGGDSLALLFLLQDFLERQPSGP-SLLAVTVDHGLRPDSATEARAVGELAAARG 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           IAH  + W+ +KP+ G+ AAAREAR AL++  A+     L+ TAHT DDQ ET+ MR  R
Sbjct: 84  IAHRTLRWEEAKPKAGISAAAREARLALLARAAREAGTDLVFTAHTADDQAETLAMRLSR 143

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                    +G+    L++ ++W +RP L  RR  +R++L +R ISW EDPSN D RFER
Sbjct: 144 GGGRG---AAGIAPATLFEGDVWFTRPLLHTRRAALRTYLGERGISWFEDPSNRDPRFER 200

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
            RVR  + +    AL  + +  Q LR +   A A LI    T     ++  +    + + 
Sbjct: 201 ARVRACLDEDRTQALLAEAENAQRLRQEQGRAAADLIGSAATRVAPGLLRFALAAASEEK 260

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
             L Y LR+  A+ GG   L        ++      +R  VS+ R V+ R+ ++L++ R 
Sbjct: 261 GGL-YALRIVLAVAGGSPHLADEARSAALLRRALEDERCRVSLSRAVVTRKRDWLYLHRE 319

Query: 322 VRNLPTLILYPEETTVWDGRYQF---QNLSDSLI------QIGPQSYRKADVPSGIPPII 372
            RNLP   L  E+  +WDGRY+      L  + +          +   +A+ P+G    +
Sbjct: 320 RRNLPETSLSGEQ--IWDGRYRLVPAGQLKGACVAAFGPANAAARDVAEAEAPAG----L 373

Query: 373 AQRALSSMPSKEGG---------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFI 417
            + AL++ P+   G               + L  P++R +  FDL  A A          
Sbjct: 374 LRSALAAEPAIWRGDLCLGLASDMEGLVLQRLAQPWARLLPSFDLAPASALLELLNGSVP 433

Query: 418 PRLPF 422
           P LPF
Sbjct: 434 PILPF 438


>gi|254714554|ref|ZP_05176365.1| hypothetical protein BcetM6_14687 [Brucella ceti M644/93/1]
 gi|254717451|ref|ZP_05179262.1| hypothetical protein BcetM_13811 [Brucella ceti M13/05/1]
          Length = 448

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 134/407 (32%), Positives = 197/407 (48%), Gaps = 19/407 (4%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERIL 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK-----ADVPSGIPPIIAQRALSSMPSKEGGKPLLAPF 393
            +I P   ++      +    I     +  L S    EGGKP   PF
Sbjct: 356 FEIAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKPAFVPF 402


>gi|261219282|ref|ZP_05933563.1| tRNA(Ile)-lysidine synthase [Brucella ceti M13/05/1]
 gi|261322343|ref|ZP_05961540.1| tRNA(Ile)-lysidine synthase [Brucella ceti M644/93/1]
 gi|260924371|gb|EEX90939.1| tRNA(Ile)-lysidine synthase [Brucella ceti M13/05/1]
 gi|261295033|gb|EEX98529.1| tRNA(Ile)-lysidine synthase [Brucella ceti M644/93/1]
          Length = 453

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 133/405 (32%), Positives = 196/405 (48%), Gaps = 19/405 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293
             L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++  
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERILSG 302

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362

Query: 354 IGPQSYRK-----ADVPSGIPPIIAQRALSSMPSKEGGKPLLAPF 393
           I P   ++      +    I     +  L S    EGGKP   PF
Sbjct: 363 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKPAFVPF 407


>gi|254708440|ref|ZP_05170268.1| hypothetical protein BpinM_16175 [Brucella pinnipedialis
           M163/99/10]
 gi|254708707|ref|ZP_05170518.1| hypothetical protein BpinB_00311 [Brucella pinnipedialis B2/94]
 gi|256030233|ref|ZP_05443847.1| hypothetical protein BpinM2_06231 [Brucella pinnipedialis
           M292/94/1]
 gi|256160408|ref|ZP_05458097.1| hypothetical protein BcetM4_15479 [Brucella ceti M490/95/1]
 gi|256255614|ref|ZP_05461150.1| hypothetical protein BcetB_15298 [Brucella ceti B1/94]
 gi|260167908|ref|ZP_05754719.1| hypothetical protein BruF5_05982 [Brucella sp. F5/99]
 gi|261757346|ref|ZP_06001055.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella sp. F5/99]
 gi|261737330|gb|EEY25326.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella sp. F5/99]
          Length = 448

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERIL 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|256370101|ref|YP_003107612.1| tRNA(Ile)-lysidine synthetase [Brucella microti CCM 4915]
 gi|256000264|gb|ACU48663.1| tRNA(Ile)-lysidine synthetase [Brucella microti CCM 4915]
          Length = 448

 Score =  156 bits (394), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGTPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|225853148|ref|YP_002733381.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis ATCC 23457]
 gi|256045303|ref|ZP_05448197.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114261|ref|ZP_05455006.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263360|ref|ZP_05465892.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565805|ref|ZP_05836288.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. 16M]
 gi|61216690|sp|Q8YIV0|TILS_BRUME RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|254789035|sp|C0REV5|TILS_BRUMB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225641513|gb|ACO01427.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis ATCC 23457]
 gi|260151178|gb|EEW86273.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. 16M]
 gi|263093359|gb|EEZ17428.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409706|gb|ADZ66771.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis M28]
 gi|326539413|gb|ADZ87628.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis M5-90]
          Length = 448

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|256061730|ref|ZP_05451867.1| hypothetical protein Bneo5_15421 [Brucella neotomae 5K33]
          Length = 448

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLL--ASIAGGRRFLPGDGERRRIERML 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|62290564|ref|YP_222357.1| hypothetical protein BruAb1_1677 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700480|ref|YP_415054.1| hypothetical protein BAB1_1704 [Brucella melitensis biovar Abortus
           2308]
 gi|148560003|ref|YP_001259546.1| tRNA(Ile)-lysidine synthetase [Brucella ovis ATCC 25840]
 gi|189024784|ref|YP_001935552.1| hypothetical protein BAbS19_I15940 [Brucella abortus S19]
 gi|254689861|ref|ZP_05153115.1| hypothetical protein Babob68_06777 [Brucella abortus bv. 6 str.
           870]
 gi|254694354|ref|ZP_05156182.1| hypothetical protein Babob3T_06787 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698012|ref|ZP_05159840.1| hypothetical protein Babob28_09973 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700354|ref|ZP_05162182.1| hypothetical protein Bsuib55_05789 [Brucella suis bv. 5 str. 513]
 gi|254730896|ref|ZP_05189474.1| hypothetical protein Babob42_06812 [Brucella abortus bv. 4 str.
           292]
 gi|256258115|ref|ZP_05463651.1| hypothetical protein Babob9C_12379 [Brucella abortus bv. 9 str.
           C68]
 gi|260547191|ref|ZP_05822929.1| tRNA-lysidine synthetase [Brucella abortus NCTC 8038]
 gi|261214662|ref|ZP_05928943.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 3 str. Tulya]
 gi|297248964|ref|ZP_06932672.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 5 str. B3196]
 gi|75496348|sp|Q57BI8|TILS_BRUAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|123547188|sp|Q2YQH6|TILS_BRUA2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|166988057|sp|A5VS49|TILS_BRUO2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695537|sp|B2S7D1|TILS_BRUA1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|62196696|gb|AAX74996.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616581|emb|CAJ11660.1| Protein of unknown function UPF0021 [Brucella melitensis biovar
           Abortus 2308]
 gi|148371260|gb|ABQ61239.1| tRNA(Ile)-lysidine synthetase [Brucella ovis ATCC 25840]
 gi|189020356|gb|ACD73078.1| hypothetical protein BAbS19_I15940 [Brucella abortus S19]
 gi|260095556|gb|EEW79434.1| tRNA-lysidine synthetase [Brucella abortus NCTC 8038]
 gi|260916269|gb|EEX83130.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 3 str. Tulya]
 gi|297174097|gb|EFH33454.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 5 str. B3196]
          Length = 448

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|23502550|ref|NP_698677.1| hypothetical protein BR1692 [Brucella suis 1330]
 gi|61216663|sp|Q8FZ11|TILS_BRUSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|23348550|gb|AAN30592.1| conserved hypothetical protein [Brucella suis 1330]
          Length = 448

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVKLARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|161619622|ref|YP_001593509.1| tRNA(Ile)-lysidine synthase [Brucella canis ATCC 23365]
 gi|163845272|ref|YP_001622927.1| tRNA(Ile)-lysidine synthetase [Brucella suis ATCC 23445]
 gi|254703471|ref|ZP_05165299.1| tRNA(Ile)-lysidine synthetase [Brucella suis bv. 3 str. 686]
 gi|260568779|ref|ZP_05839247.1| tRNA(Ile)-lysidine synthase [Brucella suis bv. 4 str. 40]
 gi|189035965|sp|A9M7J1|TILS_BRUC2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|189035966|sp|A9WWG9|TILS_BRUSI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|161336433|gb|ABX62738.1| tRNA(Ile)-lysidine synthase [Brucella canis ATCC 23365]
 gi|163675995|gb|ABY40105.1| tRNA(Ile)-lysidine synthetase [Brucella suis ATCC 23445]
 gi|260154163|gb|EEW89245.1| tRNA(Ile)-lysidine synthase [Brucella suis bv. 4 str. 40]
          Length = 448

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLL--ASIAGGRRFLPGDGERRRIERML 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|254719695|ref|ZP_05181506.1| hypothetical protein Bru83_09158 [Brucella sp. 83/13]
 gi|306837846|ref|ZP_07470708.1| tRNA(Ile)-lysidine synthetase [Brucella sp. NF 2653]
 gi|306407085|gb|EFM63302.1| tRNA(Ile)-lysidine synthetase [Brucella sp. NF 2653]
          Length = 448

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 184/370 (49%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHRVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ +  D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLDADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|225628261|ref|ZP_03786295.1| tRNA(Ile)-lysidine synthetase [Brucella ceti str. Cudo]
 gi|261222817|ref|ZP_05937098.1| tRNA(Ile)-lysidine synthase [Brucella ceti B1/94]
 gi|261315940|ref|ZP_05955137.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M163/99/10]
 gi|261316198|ref|ZP_05955395.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis B2/94]
 gi|265987261|ref|ZP_06099818.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M292/94/1]
 gi|265998776|ref|ZP_06111333.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella ceti M490/95/1]
 gi|225616107|gb|EEH13155.1| tRNA(Ile)-lysidine synthetase [Brucella ceti str. Cudo]
 gi|260921401|gb|EEX88054.1| tRNA(Ile)-lysidine synthase [Brucella ceti B1/94]
 gi|261295421|gb|EEX98917.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis B2/94]
 gi|261304966|gb|EEY08463.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M163/99/10]
 gi|262553465|gb|EEZ09234.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella ceti M490/95/1]
 gi|264659458|gb|EEZ29719.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M292/94/1]
          Length = 453

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293
             L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++  
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERILSG 302

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362

Query: 354 IGPQSYRK 361
           I P   ++
Sbjct: 363 IAPPGRQE 370


>gi|294850945|ref|ZP_06791621.1| tRNA(Ile)-lysidine synthase [Brucella sp. NVSL 07-0026]
 gi|294821588|gb|EFG38584.1| tRNA(Ile)-lysidine synthase [Brucella sp. NVSL 07-0026]
          Length = 448

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNVDCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|261754101|ref|ZP_05997810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella suis bv. 3 str. 686]
 gi|261743854|gb|EEY31780.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella suis bv. 3 str. 686]
          Length = 453

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293
             L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++  
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362

Query: 354 IGPQSYRK 361
           I P   ++
Sbjct: 363 IAPPGRQE 370


>gi|265991728|ref|ZP_06104285.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995565|ref|ZP_06108122.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 3 str. Ether]
 gi|262766849|gb|EEZ12467.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 3 str. Ether]
 gi|263002684|gb|EEZ15087.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 453

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293
             L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++  
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362

Query: 354 IGPQSYRK 361
           I P   ++
Sbjct: 363 IAPPGRQE 370


>gi|261325734|ref|ZP_05964931.1| tRNA(Ile)-lysidine synthase [Brucella neotomae 5K33]
 gi|261301714|gb|EEY05211.1| tRNA(Ile)-lysidine synthase [Brucella neotomae 5K33]
          Length = 453

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293
             L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++  
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362

Query: 354 IGPQSYRK 361
           I P   ++
Sbjct: 363 IAPPGRQE 370


>gi|237816070|ref|ZP_04595066.1| tRNA(Ile)-lysidine synthetase [Brucella abortus str. 2308 A]
 gi|260755392|ref|ZP_05867740.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 6 str. 870]
 gi|260758613|ref|ZP_05870961.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 4 str. 292]
 gi|260762446|ref|ZP_05874783.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884408|ref|ZP_05896022.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 9 str. C68]
 gi|261750848|ref|ZP_05994557.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella suis bv. 5 str. 513]
 gi|237788733|gb|EEP62945.1| tRNA(Ile)-lysidine synthetase [Brucella abortus str. 2308 A]
 gi|260668931|gb|EEX55871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 4 str. 292]
 gi|260672872|gb|EEX59693.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675500|gb|EEX62321.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 6 str. 870]
 gi|260873936|gb|EEX81005.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 9 str. C68]
 gi|261740601|gb|EEY28527.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella suis bv. 5 str. 513]
          Length = 453

 Score =  154 bits (389), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 14/368 (3%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293
             L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++  
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362

Query: 354 IGPQSYRK 361
           I P   ++
Sbjct: 363 IAPPGRQE 370


>gi|265984710|ref|ZP_06097445.1| tRNA(Ile)-lysidine synthase [Brucella sp. 83/13]
 gi|264663302|gb|EEZ33563.1| tRNA(Ile)-lysidine synthase [Brucella sp. 83/13]
          Length = 453

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/368 (33%), Positives = 183/368 (49%), Gaps = 14/368 (3%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHRVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLF 293
             L V    ++ +  D    L+  +  LF  L   A+I GG+  LPG    R +ER++  
Sbjct: 245 ATLGVDAAGMMFLDADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSG 302

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 303 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 362

Query: 354 IGPQSYRK 361
           I P   ++
Sbjct: 363 IAPPGRQE 370


>gi|306841411|ref|ZP_07474113.1| tRNA(Ile)-lysidine synthetase [Brucella sp. BO2]
 gi|306288517|gb|EFM59869.1| tRNA(Ile)-lysidine synthetase [Brucella sp. BO2]
          Length = 448

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 184/370 (49%), Gaps = 14/370 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS          A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLE-SPPALIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H ++SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHRILSWDDPKPVHGLAAAARTARYRLLVQAARDAGAD 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALREE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVM 291
            P  L V    ++ ++ D    L+  +  LF  L   A+I GG+  LPG    R +ER++
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERML 295

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
               + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N     
Sbjct: 296 SGQDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRK 361
            +I P   ++
Sbjct: 356 FEIAPPGRQE 365


>gi|17986625|ref|NP_539259.1| cell cycle protein MESJ [Brucella melitensis bv. 1 str. 16M]
 gi|17982239|gb|AAL51523.1| cell cycle protein mesj [Brucella melitensis bv. 1 str. 16M]
          Length = 429

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 177/349 (50%), Gaps = 12/349 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++ AVSGGSDS+GLL  L   LS      +   A++VDH LR  +  E   V  +C +  
Sbjct: 1   MIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKLRAESALEAENVGLLCQKHG 59

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H V+SW + KP  GL AAAR ARY L+ + A+   A  I+T HT +DQ+ET  MR  R
Sbjct: 60  IMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFIVTGHTENDQIETFLMRKAR 119

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +  GL+ M    L + ++ ++RP L   R+ +R  L +R I+W +DPSN +  +ER
Sbjct: 120 SGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELTRRGIAWVDDPSNANIDYER 179

Query: 202 VRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIPKYLTVHMRSIIAISQDI-- 256
            RVR  V  + D   +  ++ +    R + N A+  A+  P  L V    ++ ++ D   
Sbjct: 180 PRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALADPATLGVDAAGMMFLNADCYA 239

Query: 257 -LNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
            L+  +  LF  L   A+I GG+  LPG    R +ER++    + +R  V    +    +
Sbjct: 240 ALSPGARQLFSGL--LASIAGGRRFLPGDGERRRIERMLSGQDAPRRLTVFGALIERGEK 297

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
                  R  RNLP L L P +  VWDGR+ F N      +I P   ++
Sbjct: 298 GAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIAPPGRQE 346


>gi|49474667|ref|YP_032709.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse]
 gi|61216506|sp|Q6FYQ5|TILS_BARQU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49240171|emb|CAF26635.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse]
          Length = 476

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 176/370 (47%), Gaps = 37/370 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGGSDS+ LL  +   L   S    +   ++VDH LR  +  E   V+++C    
Sbjct: 21  VILAVSGGSDSLALLFLVKDHLKTFSI-PTEIIVVTVDHQLRRESACEAESVAEICRAHH 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H +V W+  KP+T ++++AR  RY L+ + A+   ATLIMT HT +DQ+ET  MR QR
Sbjct: 80  IQHVIVRWEGKKPKTHIISSARTVRYNLLFKEAQKQGATLIMTGHTLNDQVETYQMRCQR 139

Query: 142 ---------------------------DYAEKGM------GLSGMCDTILYDLNLWISRP 168
                                      + AEK        GLS +    L +  + + RP
Sbjct: 140 LQKSADVLQREAFEDMRDGVCSTETRANIAEKSYGLMYERGLSCIPREALLNQTVRLIRP 199

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            L  +R+ +R++L  +  +W +DP+N +  FERVRVR+ +       +  K+ +    R 
Sbjct: 200 LLGVKRKTLRAYLRLKGKTWIDDPTNENPNFERVRVRQSLHPKKFAGIAQKVHEATLQRR 259

Query: 229 KVNNAVAMLIPKY-LTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
           K    VA LI    ++V H R  IA     L   S   F +   +  + GG   LP  + 
Sbjct: 260 KQAQNVANLILALDVSVEHGRCFIAKPVSFLQQHSGFPFVVGLFAVLMGGGFYLLPTKKL 319

Query: 287 MERV-MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
              V  L L S ++   ++   VI+   + L   R  RN+    + P +T +WDGRYQ  
Sbjct: 320 NTLVSKLCLHSLEKRRFTLAGSVIESNRSGLAFWRESRNIKEGAVEPGKTFLWDGRYQIT 379

Query: 346 NLSDSLIQIG 355
           N  D  I++G
Sbjct: 380 NRGDETIKVG 389


>gi|239832779|ref|ZP_04681108.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239825046|gb|EEQ96614.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 463

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 181/348 (52%), Gaps = 35/348 (10%)

Query: 22  ILVAVSGGSDSMGLLIALH---SVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           ++ AVSGGSDS+GLL  L    ++L D      +  A +VDH LR  ++DE   V  +CS
Sbjct: 23  VIAAVSGGSDSLGLLFLLRDYMAMLKD----PPRLIAATVDHQLRAESRDEAENVGRLCS 78

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              I H +++W  +KP +GL AAAR ARY L+S+ A+   A  I+T HT DDQ+ET  MR
Sbjct: 79  HYGIEHRILTWDEAKPTSGLAAAARTARYRLLSQAAQEAGAAFIVTGHTQDDQIETFLMR 138

Query: 139 SQRDYAEKGMGLSGMCDTILYD-----LNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +R    +  GL+ M    L        ++ + RP L   R+ +R  L  R I W +DPS
Sbjct: 139 RERSAHAEARGLAAMSSRSLLGGFGRVGSVELDRPLLSISRQVLREELRGRGIGWIDDPS 198

Query: 194 NTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSI 249
           N +  +ER RVR  V    D  A+  ++ +    R + +NAV   A+  P  L +     
Sbjct: 199 NANTDYERPRVRLGVAAKADRQAVLDQIAEAGAARER-DNAVLIAALADPASLRIDANGA 257

Query: 250 IAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPG--YRS-MERVMLFLKSGKRGCVS 303
           + +   +   L  ++  LF  L   AAI GG+  LPG   RS +ERV+       R  ++
Sbjct: 258 LLVDPQLYAALPDNARRLFAGL--LAAIAGGRRFLPGDSERSRIERVLSGEDDNHR--LT 313

Query: 304 IGRVVIDRRAN-----FLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346
           +   +I+R A+     FL   R  RNLP L L P +  VWDGR++F N
Sbjct: 314 VFGALIERGADGSPHRFL---REKRNLPKLHLEPGKPIVWDGRFRFSN 358


>gi|240851214|ref|YP_002972617.1| tRNA(Ile)-lysidine synthetase [Bartonella grahamii as4aup]
 gi|240268337|gb|ACS51925.1| tRNA(Ile)-lysidine synthetase [Bartonella grahamii as4aup]
          Length = 495

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 181/389 (46%), Gaps = 56/389 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGGSDS+ L+  +   L   S    +   ++VDH LR+ +  EV  V+ +C    
Sbjct: 21  LILAVSGGSDSLALMFLVKEHLETLSVPP-EMIVVTVDHQLRKESTREVETVAKICRVHH 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H  V W+  KP+T + ++AR ARY L+ + A+   A++IMT HT +DQ+ET  MR QR
Sbjct: 80  IKHIAVRWEGEKPKTHIASSARVARYDLLVKEAQKQGASVIMTGHTLNDQVETYQMRYQR 139

Query: 142 DYAEKGM---------------GLSGMC------------------------DTILYDLN 162
               +G                G +G+                         D+ LY+  
Sbjct: 140 LQKNRGALHGEVGAMRDEVYSSGFAGVLRGEADGIRDENHAREIRKKITKKNDSPLYERG 199

Query: 163 L-------------WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
           L              + RP L  +R+ +R++L  +  +W +DP+N D  FERVRVR+ + 
Sbjct: 200 LSCIPREALLHRKVRLIRPLLGVKRQTLRNYLRLQGQTWIDDPTNEDRNFERVRVRQSLH 259

Query: 210 DIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYL 267
              L  +  K+ +     R +  N   +++   +TV H R  IA     L   S+  F +
Sbjct: 260 PEKLAYIAQKINEAALQRRQQAKNIADLILALDITVQHGRCFIAKPALFLQKHSSFPFVV 319

Query: 268 LRVSAAICGGQISLPGYR-SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326
              +  + GG   LP  + SM    L L S ++   +    VI+   + + + R  RN+ 
Sbjct: 320 GLFAVLMGGGFYLLPNQKLSMLVQKLCLDSVEKKRFTYAGSVIEYNKHGISLWREGRNMK 379

Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIG 355
             I+ P++T +WDGRYQ  N     I+IG
Sbjct: 380 EAIVEPDKTFIWDGRYQITNHGSKAIKIG 408


>gi|319899362|ref|YP_004159459.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Bartonella
           clarridgeiae 73]
 gi|319403330|emb|CBI76889.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Bartonella
           clarridgeiae 73]
          Length = 481

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 174/380 (45%), Gaps = 47/380 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGGSDS+ LL  +   L        +   +++DH LRE +  E   V+ +C   +
Sbjct: 21  LILAVSGGSDSLALLFLVQEHLKILPIAP-EVIVVTIDHQLREESAHEAESVAKICHAYQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H +V W+  KP+T +   AR ARY L+ + A+   ATLIMT HT +DQ ET  MR QR
Sbjct: 80  IKHIIVRWEGKKPETKISEKARIARYDLLFKEAQKHGATLIMTGHTLNDQAETYQMRVQR 139

Query: 142 DY---------------------------------------AEKGM--GLSGMCDTILYD 160
                                                    AE+G   GLS +    L  
Sbjct: 140 SQKKTEGAQSETLEKSLKERSSENGITEILKENDQEISIKKAEEGYERGLSCIPREALLH 199

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220
             + + RP L  RR+ +R++L  +  +W +DP+N D RFERVRVR F+R  +L  +  K+
Sbjct: 200 GQVRLIRPLLGVRRQTLRAYLSFQGSTWIDDPTNEDLRFERVRVRHFLRQKNLSEIAKKV 259

Query: 221 KKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
            K     R++      +++   + V H R  I      L+      F ++ +   + GG 
Sbjct: 260 NKAALKRRMQAQKVADLILALDIAVEHGRCFIGKPPVFLHQHHAFPF-VVGLFVVLMGGS 318

Query: 279 ISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
             L   + +  +   L L+  ++   ++   VI+     + + R  R++   I+ P ET 
Sbjct: 319 SYLLSSQKLVALNQKLCLQEPEKKRFTLAGAVIETSKKGIAMWRETRHIQEAIIAPGETF 378

Query: 337 VWDGRYQFQNLSDSLIQIGP 356
           VWD RYQ  N     I++ P
Sbjct: 379 VWDRRYQISNYDTKAIRVRP 398


>gi|49476135|ref|YP_034176.1| hypothetical protein BH14760 [Bartonella henselae str. Houston-1]
 gi|61216510|sp|Q6G5P5|TILS_BARHE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49238943|emb|CAF28239.1| hypothetical protein BH14760 [Bartonella henselae str. Houston-1]
          Length = 493

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 180/389 (46%), Gaps = 58/389 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGGSDS+ LL  +   L   S    +   ++VDH LR+ +  E   V+++C    
Sbjct: 21  LILAVSGGSDSLALLFLVKDHLKTLSVPP-EIIVVTVDHQLRQESAREASIVAEICRAHH 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H +V W+  KP+T + ++AR ARY L+ + A+   ATLIMT HT +DQ+ET  MR QR
Sbjct: 80  IQHRIVRWEGKKPKTHIASSARVARYDLLFQEAQKQGATLIMTGHTLNDQVETYQMRYQR 139

Query: 142 -----------DYAEKG-------------------MGLSGM-------CDTILYDLNLW 164
                       +AE G                   MG+ G         D ++Y+  L 
Sbjct: 140 LQKSADVLQQEAFAEMGGGVHADVLQQEAFAERCERMGVGGHGGDIAEKSDGLIYERGLS 199

Query: 165 -------------ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
                        + RP L  +RE +R++L  +  +W EDP+N D  FERVRVR+ ++  
Sbjct: 200 CIPREALLRGTVRLIRPLLGVKRETLRTYLRLKEKTWIEDPTNEDCNFERVRVRQSLQPK 259

Query: 212 DLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLR 269
               +  K+ +     R +  N   +++   +TV + R  IA     L       F +  
Sbjct: 260 KFTCIARKVHEAALQRRQQAKNIADLILALDITVEYGRCFIAKPALFLQKHPGFPFVVGL 319

Query: 270 VSAAICGGQISLPGYR--SMERVMLFLKSGKRGCVSIGRVVIDRRANF-LWITRAVRNLP 326
            +  + GG   LP  +  ++ + +    S KR     G V+   R+    W  R  RN+ 
Sbjct: 320 FAVLMGGGFYLLPHKKLSTLVQKLSLHSSEKRRFTYAGSVIEYNRSGIAFW--REARNIK 377

Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIG 355
             I+   +T +WDGRYQ  N S   I++G
Sbjct: 378 EAIVEKGQTFLWDGRYQITNHSHEPIKVG 406


>gi|153008553|ref|YP_001369768.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|166988061|sp|A6WY85|TILS_OCHA4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|151560441|gb|ABS13939.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 456

 Score =  142 bits (359), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 172/340 (50%), Gaps = 19/340 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++ AVSGGSDS+GLL  +   ++       +  A++VDH LR  +K E   V  +C +  
Sbjct: 23  VIAAVSGGSDSLGLLFLVRDYMAMLQ-NPPRLIAVTVDHQLRAESKAEAENVGLLCRQYG 81

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H ++ W  +KP +GL AAAR ARY L+ + A+ +    I+T HT DDQ+ET  MR +R
Sbjct: 82  IEHRILVWDEAKPTSGLAAAARTARYRLLVQAARDVGGAFIVTGHTQDDQIETFLMRKER 141

Query: 142 DYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               +  GL+ M      D +  + ++ + RP L   R+ +R  L  R I+W +DPSN +
Sbjct: 142 SAHAEARGLAAMSLRSLLDGLGLEGSVELDRPLLSVSRQTLRDELRGRGINWVDDPSNAN 201

Query: 197 DRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIPKYLTVHMRSIIAIS 253
             +ER R+R  +  + D   +  ++ +    R + N A+  A+  P  L       + + 
Sbjct: 202 TEYERPRIRHGIAAEADRQTVLDQIAEAGAARERDNAALIAALGNPASLRADANGALLVD 261

Query: 254 QDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC--VSIGRVV 308
             +   L  ++  LF  L   AAI GG+  LPG     R+   L SG      +++   +
Sbjct: 262 PQLYAALPGNARRLFSGL--LAAIAGGRRFLPGDSERSRIERVL-SGDDDTHRLTVFGAL 318

Query: 309 IDR--RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346
           I+R    +     R  RNLP L L P +  VWDGR++F N
Sbjct: 319 IERGDSGSPHRFLREKRNLPKLHLEPGKPIVWDGRFRFLN 358


>gi|163869123|ref|YP_001610362.1| tRNA(Ile)-lysidine synthase [Bartonella tribocorum CIP 105476]
 gi|189035963|sp|A9IYI2|TILS_BART1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|161018809|emb|CAK02367.1| tRNA(Ile)-lysidine synthase [Bartonella tribocorum CIP 105476]
          Length = 495

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 175/389 (44%), Gaps = 56/389 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGGSDS+ L+  +   L +      +  A++VDH LR+ +  E   V+++C    
Sbjct: 21  VILAVSGGSDSLALMFLVKEYL-ETLLIPPEIIAVTVDHQLRKESAREAEIVAEICRDHH 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H  V W+  KP+T L  +AR ARY L+ + A+   A+LIMT HT +DQ+ET  MR QR
Sbjct: 80  IKHITVRWEGKKPKTHLAFSARIARYDLLVQEAQKQGASLIMTGHTLNDQVETYQMRCQR 139

Query: 142 DYAEKGM---GLSGMCDT------------------------------------ILYDLN 162
               +G     +  MCD                                     +LY+  
Sbjct: 140 LQKRRGALRDEVGAMCDGGAASGFAGALRDKAGARRDEDYVRETRKNIAEKSYGVLYERG 199

Query: 163 L-------------WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
           L              + RP L  +R+ +R++L  +  +W +DP+N D  FERVRVR+ + 
Sbjct: 200 LSCIPREALLHRKVRLIRPLLGVQRQTLRNYLRLQGKTWIDDPTNEDRNFERVRVRQSLS 259

Query: 210 DIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTVHM-RSIIAISQDILNIDSTLLFYL 267
              L  +  K+ K     R +  N   +++   +TV   R  I      L   S   F +
Sbjct: 260 SQKLVNIAQKINKAAWQRRQQAQNIADLILALDITVQYGRCFIVKPAPFLQKHSCFPFVV 319

Query: 268 LRVSAAICGGQISLPGYR-SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326
              +  + GG   L   + SM    L L S ++   +    VI+     + + R  RN+ 
Sbjct: 320 GLFAVLMGGGFYLLSNQKLSMLVQKLCLNSPEKRRFTCAGCVIEYNKEGIALWRERRNMK 379

Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIG 355
             ++ P+ET +WDGRY+  N     I++G
Sbjct: 380 EALVEPDETLLWDGRYRITNHGSEAIKVG 408


>gi|218509292|ref|ZP_03507170.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli Brasil 5]
          Length = 312

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 132/246 (53%), Gaps = 16/246 (6%)

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR- 209
           SG+ D +L+D   WI RP L   R DIRSFL +R ++W +DPSN D ++ERVRVRR +  
Sbjct: 11  SGIADAVLFDRRFWILRPLLFSSRADIRSFLRERRVAWIDDPSNEDVKYERVRVRRQLSA 70

Query: 210 ----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF 265
               + D+ A + +       R+ +++A A  + ++  +    +  +  D L  D  +L 
Sbjct: 71  DPATETDIRAAWKE-------RLALSSAAAEWLDRHFRLQGGLLGQVLPDGLRQDHAVLA 123

Query: 266 YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325
           Y L    A+ GGQ   PG   MER++LF    +   +++GRVV D R + L++ R  R +
Sbjct: 124 YALGRLTAVFGGQAFAPGRVQMERLLLFAAGNEPRRMTVGRVVFDLRRDGLYLARESRGI 183

Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP---SGI-PPIIAQRALSSMP 381
             L L P E  VWDGR++  N S + I+I  Q  R + +P   +GI PP +     S++P
Sbjct: 184 LPLTLRPGEAGVWDGRFEAANGSGATIRIEAQGARSSPIPVLVTGIQPPRVGAVNDSTVP 243

Query: 382 SKEGGK 387
            +   +
Sbjct: 244 DESAAR 249


>gi|319406243|emb|CBI79880.1| tRNA(Ile)-lysidine synthase [Bartonella sp. AR 15-3]
          Length = 485

 Score =  139 bits (350), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 166/384 (43%), Gaps = 51/384 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++ VSGGSDS+ LL  +   L        +   +++DH LRE +  E   V+ +C   +
Sbjct: 21  LILGVSGGSDSLALLFLVKEHLKTLPIAP-EVIVVTIDHQLREESAYEAENVAKICYAFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H +V W+  KPQT +   AR ARY L+ + A+   ATLIMT HT +DQ ET  MR QR
Sbjct: 80  IKHIIVRWEGKKPQTKISEKARIARYDLLFKEAQKQGATLIMTGHTLNDQAETYQMRVQR 139

Query: 142 ---------------------------------------------DYAEKGMGLSGMCDT 156
                                                        D      GLS M   
Sbjct: 140 SQKKTEAARHETSEMPWKDREKDKAPANEEMEISKENSHKRLVQKDEERYERGLSCMPRE 199

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
            L    + + RP L  RR+ +R++L  R  +W +DP+N D +FERVRVR F+    L  +
Sbjct: 200 ALLYGKVRLIRPLLGVRRKTLRAYLSLRGSTWIDDPTNEDLKFERVRVRHFLHQKKLTEI 259

Query: 217 YLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAI 274
             K+ K     RV+      +++   +TV +    I      L       F ++ +   +
Sbjct: 260 AQKVHKATVQRRVQAQKVADLILALDITVEYGHCFIGKPPSFLQQHHAFPF-VVGLFIVL 318

Query: 275 CGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP 332
            GG   L   + +  +   L L   ++   ++   VI+     L I R  R++    + P
Sbjct: 319 MGGSSYLLSSQKLAALDQKLCLHDLEKKRFTLAGAVIEYSRKGLAIWREARHIQKATIAP 378

Query: 333 EETTVWDGRYQFQNLSDSLIQIGP 356
            ET +WD RYQ  N   + I +GP
Sbjct: 379 GETFIWDQRYQIINHDTTAICVGP 402


>gi|304393350|ref|ZP_07375278.1| tRNA(Ile)-lysidine synthase [Ahrensia sp. R2A130]
 gi|303294357|gb|EFL88729.1| tRNA(Ile)-lysidine synthase [Ahrensia sp. R2A130]
          Length = 344

 Score =  138 bits (348), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 157/337 (46%), Gaps = 18/337 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGGSDS  LL  LH     R   K    A +VDH LR  A +E   V  VC +L 
Sbjct: 8   VLVAISGGSDSSALLHRLH-----REIAKGNLFAATVDHGLRPEAAEEALQVEAVCQKLD 62

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +AH+ + W   K      A+AR ARY L+  HA+++ A  I   HT DDQ ETV+MR+ R
Sbjct: 63  VAHATLRWSGGKKTA---ASARAARYDLLVAHAQSLGAATIALGHTMDDQAETVFMRAMR 119

Query: 142 -DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                   GL+GM     + L + + RP L  RR  +R  L    ++W EDP+N D   E
Sbjct: 120 LRPTSNTRGLAGMT-ACTHHLGVTLWRPLLSTRRTALREDLSAAGLTWIEDPTNQDTSTE 178

Query: 201 RVRVRRFVRDIDLHALYL-KMKKFQDL----RVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           RVRVR     ++ H+  +  + +F  +    R  +    A  +  Y+       + I  +
Sbjct: 179 RVRVR---NQLEAHSSTVHHLARFAAICAQSRSWLAQETATAMRNYVRWRNADNVWIISE 235

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
           I  +   +L  +L V     GGQ   P    +  V   ++  K    S+GR V+    + 
Sbjct: 236 IPRLQKLVLREVLSVLIMAAGGQPYRPALAKLYPVADAVERNKNLRYSVGRSVVQVLGDT 295

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352
           + ++R           P   +  +G Y+F++ +D  I
Sbjct: 296 IMVSREGLRRNEKPSKPTTESASNGLYRFRSSADDPI 332


>gi|319404754|emb|CBI78356.1| tRNA(Ile)-lysidine synthase [Bartonella rochalimae ATCC BAA-1498]
          Length = 487

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 170/386 (44%), Gaps = 55/386 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++ VSGG DS+ LL  +   L        +   +++DH LRE +  E   V+ +C  L+
Sbjct: 21  LILGVSGGGDSLALLFLVKEHLKTVPLAP-EVIVVTIDHQLREESAYEAESVAKICHALQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H VV W+  KP+T +   AR ARY L+ + A+   ATLIMT HT +DQ ET  MR QR
Sbjct: 80  IKHIVVRWEGKKPRTQISEKARIARYDLLFKEAQKQGATLIMTGHTLNDQAETYQMRVQR 139

Query: 142 D---------------YAEKGM------------------------------GLSGMCDT 156
                           + E+G                               GLS M   
Sbjct: 140 SQKKTDGAQQEIPEILWEERGKERESANEEMQILKEKSQKRSAENDEERYERGLSCMPRE 199

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
            L    + + RP L  RR+ +R++L  +   W +DP+N D +FERVRVR  +    +  +
Sbjct: 200 ALLYGKVRLIRPLLGVRRKTLRAYLSLQGSKWIDDPTNEDLKFERVRVRHVLHQKKMTEI 259

Query: 217 YLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAI 274
             K+ K     RV+      +++   +TV + R  I      L       F ++ +   +
Sbjct: 260 AQKVHKAALQRRVQAQKVADLILALDITVEYGRCFIGQPPSFLQKHHAFPF-VVGLFIVL 318

Query: 275 CGGQISLPGYRSM----ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330
            GG   L   + +    +++ L     KR  ++   +   R+   +W  R  R++   ++
Sbjct: 319 MGGSSYLLSSQKLAVLDQKLSLHNPEKKRFTLAGAVIEYSRKGIAIW--REARHIQEAMI 376

Query: 331 YPEETTVWDGRYQFQNLSDSLIQIGP 356
            P E  +WD RYQ  N   S I++GP
Sbjct: 377 APGEIFIWDQRYQIINHDTSAIRVGP 402


>gi|300023924|ref|YP_003756535.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525745|gb|ADJ24214.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 443

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 183/400 (45%), Gaps = 31/400 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+++AVSGG DSM LL+        R+      S  +VDH LR  +  E  +V+    RL
Sbjct: 26  HVVLAVSGGPDSMALLVLASEWRQRRNGAPPSLSVATVDHGLRPESPREAEFVASEAQRL 85

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQLETVYMR 138
            + H  + W   KP  G+  AAR ARY L+ +HA+ ++A+   ++TAH   DQ ET  MR
Sbjct: 86  GLPHVTLPWTGEKPSRGIPDAARRARYRLLDDHARALSASDVAVVTAHHQGDQAETFAMR 145

Query: 139 SQRDYAEKGMGLSGM-CDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R     G  L+GM  + +L++ + + + RP L   +  + + L  R +S  +DPSN+D
Sbjct: 146 LARGAGVNG--LAGMPAERVLHEGSTVSLVRPLLAFAKSRLIATLEARGLSSVDDPSNSD 203

Query: 197 DRFERVRVRRFVRDIDLH-----ALYLKMKKFQDLRVKVNNAVAMLIPKY-LTVHMRSII 250
            R+ER R+R  + D+D       AL    ++  +    +  A         L+       
Sbjct: 204 HRYERARMRSALSDLDAAGISPAALATSARRLGEAEAALRYADECFAATLALSFGNEVFA 263

Query: 251 AISQDILNIDSTLLFY-LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           A  ++       LL   LL    A  GG    P    +E +   L++  +   ++G V++
Sbjct: 264 AFDRNAFRAGPALLRQRLLGSLIARYGGASERPDLVEIEDLTARLQAEDKSTATLGGVMV 323

Query: 310 DRRANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDSLIQI-----GPQSYRKA 362
              + F+ + R    L    LIL P E+  WD R+  Q  +D++  +     G ++Y + 
Sbjct: 324 SSGSRFVRVWREAGRLTQSDLILSPGESRTWDRRFIVQRAADAIGAVKVRPLGAENYARI 383

Query: 363 D---VPSGIPPIIAQRALSSMPSKEGGK-----PLLAPFS 394
                    PP    RA  ++PS   G      P LAPF+
Sbjct: 384 AGRLAAKYRPP---SRAAHALPSFWQGDDLVAVPSLAPFA 420


>gi|319407718|emb|CBI81366.1| tRNA(Ile)-lysidine synthase [Bartonella sp. 1-1C]
          Length = 487

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 169/386 (43%), Gaps = 55/386 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++ VSGG DS+ LL  +   L        +   +++DH LRE +  E   V+ +C  L+
Sbjct: 21  LILGVSGGGDSLALLFLVKEHLKTMPLAP-EVIVVTIDHQLREESAYEAESVAKICHALQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H +V W+  KP+T +   AR ARY L+ + A+   A LIMT HT +DQ ET  MR QR
Sbjct: 80  IKHIIVRWEGKKPKTQISEKARIARYDLLFKEAQKQGAALIMTGHTLNDQAETYQMRVQR 139

Query: 142 -----DYAEKGM----------------------------------------GLSGMCDT 156
                D A++ +                                        GLS M   
Sbjct: 140 SQKKTDSAQQEIPEALSKERRQERESANEEMQILKEESQKRSTEKDEERYERGLSCMPRE 199

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
            L    + + RP L  RR+ +R++L  +   W +DP+N D +FERVRVR  +    L  +
Sbjct: 200 ALLYGKVRLIRPLLGVRRKTLRAYLFLQGSKWIDDPTNEDLKFERVRVRHVLPQKKLTEI 259

Query: 217 YLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAAI 274
             K+ K     RV+      +++   +TV + R  I      L       F ++ +   +
Sbjct: 260 AQKVHKAALQRRVQAQKVADLILALDITVEYGRCFIGKPPSFLQKHHAFSF-VIGLFIVL 318

Query: 275 CGGQISLPGYRSM----ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330
            GG   L   + +    +++ L     KR  ++   +   R+   +W  R  R++   ++
Sbjct: 319 MGGSSYLLSSQKLAVLDQKLSLHDPEKKRFTLAGAVIEYSRKGIAIW--REARHIQKAMI 376

Query: 331 YPEETTVWDGRYQFQNLSDSLIQIGP 356
            P ET +WD RYQ  N     I +GP
Sbjct: 377 APGETCIWDQRYQITNHDTLDICVGP 402


>gi|108755189|emb|CAK32581.1| putative PP-loop superfamily ATPase [uncultured organism]
          Length = 460

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 153/333 (45%), Gaps = 22/333 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           + VAVSGG DSM L +     L+ R  G+ + S  A++VDH LR  A DE R V      
Sbjct: 39  LAVAVSGGGDSMALCL-----LAQRWAGRRRGSTTALTVDHGLRPEAADEARQVGRWLKA 93

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +AH V+ W+  KP +G+ AAAR ARY L++  A+      ++ AH  +DQ ET  +R 
Sbjct: 94  RGVAHHVLEWRGPKPVSGIQAAARAARYGLMTAWAREAGVLHLLVAHHQEDQAETFLLR- 152

Query: 140 QRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                E+G G+ G+     I+    + + RP L   R  +R+        W EDPSN D 
Sbjct: 153 ----LERGSGIDGLSAMAAIVETPAVRLVRPLLGVPRARLRATARAFGQEWLEDPSNRDA 208

Query: 198 RFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            F R R+R  +       +    L  K  +   +R+ + NA + L+    TVH      +
Sbjct: 209 AFARTRIRAALPALARSGMSPAVLAEKANRVGHVRIALENAASALLAVCCTVHPAGYARL 268

Query: 253 SQDILNIDSTLLFYLLRVSAAIC-GGQISLPGYRSMERVMLFLKSGKRGCV-SIGRVVID 310
            Q I+      + +       +C GG+   P    +ER+   +  GK G   ++G   I 
Sbjct: 269 DQSIVAAAPEDVSFRALARILMCVGGREYAPRREKLERLYAVVVGGKLGKARTLGGCRIL 328

Query: 311 RRANFLWITRAVRNLPTLI-LYPEETTVWDGRY 342
                + + R +R +P  I   P    VWDGR+
Sbjct: 329 AEGYRILVCREMRGMPEPIAAVPGTRVVWDGRF 361


>gi|159043663|ref|YP_001532457.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
 gi|157911423|gb|ABV92856.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
          Length = 417

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 105/192 (54%), Gaps = 7/192 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DSM LL   H +    +    +  A SVDH LR  A DE+   +  C+ L 
Sbjct: 25  IGVAMSGGGDSMALL---HLLADWAAQSGAELRAASVDHGLRPEAADEIALAAKTCAALG 81

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H  ++W +  P   L AAAR+ARY L+S+ A+     ++   HT DDQ ETV +R  R
Sbjct: 82  IPHDSLTW-DEAPAGNLQAAARDARYRLLSDWAQAQGCAVVCLGHTQDDQAETVLLRLLR 140

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  L+ M    L    +W+ RP L   R  +R+ L  R ++W EDPSN D RF+R
Sbjct: 141 GSGVDG--LAAMRPRTLRAGTVWL-RPLLAVSRAALRADLTARGVAWAEDPSNADLRFDR 197

Query: 202 VRVRRFVRDIDL 213
           VRVR+ +  +DL
Sbjct: 198 VRVRQAMAALDL 209


>gi|259417352|ref|ZP_05741271.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B]
 gi|259346258|gb|EEW58072.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B]
          Length = 426

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/208 (38%), Positives = 113/208 (54%), Gaps = 9/208 (4%)

Query: 1   MFLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M L+P E         R  V P+ + +AVSGGSDS+ L+  L + L+ ++   +  +  +
Sbjct: 1   MLLTPTEEALIAEIRARIGVLPSKLGIAVSGGSDSIALM-HLFAALARKNGADLAIA--T 57

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           VDH LR  +  E R V+   + L ++H +++W++      L A AR ARY L+ E A   
Sbjct: 58  VDHGLRTDSLIEARGVAQQAADLGLSHDILTWQHPAQSGNLQAEARAARYRLLGEWATAR 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   HT DDQ ET  MR +R  A    GLSGM      D  + I RP L  RR D+
Sbjct: 118 EIEAVAVGHTADDQAETFLMRLRR--ASGVAGLSGMASRHHRD-GIEILRPLLGIRRSDL 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205
           R++L  R I+W +DPSN D +FERVRVR
Sbjct: 175 RAYLTAREINWVDDPSNLDMKFERVRVR 202


>gi|99082202|ref|YP_614356.1| tRNA(Ile)-lysidine synthetase-like [Ruegeria sp. TM1040]
 gi|99038482|gb|ABF65094.1| tRNA(Ile)-lysidine synthetase-like protein [Ruegeria sp. TM1040]
          Length = 430

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 116/210 (55%), Gaps = 13/210 (6%)

Query: 1   MFLSPIE-SVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M L+P E ++   +R+ +   P  + VAVSGGSDS+ L+   H + +         +  +
Sbjct: 1   MLLTPTEEALTSAIRARIGPLPEKLGVAVSGGSDSVALM---HVLATMARAEDTALAVAT 57

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           VDH LR  ++ E  +V+     L ++H  ++W++      L A AR ARY L+ + A+T 
Sbjct: 58  VDHGLRPESRREAEFVAQQAHDLGLSHQTLTWQHPADSGNLQAEARAARYRLLGDWARTQ 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRRE 175
               +   HT DDQ ETV MR +R       G++G+C   T  +   + + RP L  RR 
Sbjct: 118 GLGAVAVGHTADDQAETVLMRLRR-----ASGVAGLCGMPTCHHRDGIDVLRPMLDLRRS 172

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           D+R++L  R+++W EDPSN D +FERVR+R
Sbjct: 173 DLRAYLTARDVAWIEDPSNLDMKFERVRIR 202


>gi|254466830|ref|ZP_05080241.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
 gi|206687738|gb|EDZ48220.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
          Length = 417

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 158/342 (46%), Gaps = 18/342 (5%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           VR   RS + PA + +A+SGG DSM L+  LH        G+++  A +VDH LR  + D
Sbjct: 12  VRSQFRSAL-PAKLGIALSGGGDSMALMHLLHDCFGS---GEVQLFAATVDHGLRPGSAD 67

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHT 127
           E        +RL I H V+ W + +PQ G L A AR ARY L+   A+     ++   HT
Sbjct: 68  EAAAAGAAAARLGIPHEVLHWAD-RPQDGNLQAQARAARYELLCGWARQHGIPVLALGHT 126

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV MR  R  A    GLSGM     +   + + RP L   R ++R +L  R + 
Sbjct: 127 ADDQAETVLMRMAR--ASGVTGLSGMAARRTHK-GVTLLRPLLDVTRSELRRYLEARGVD 183

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-----KKFQDLRVKVNNAVAMLIPKYL 242
           W EDPSN D RFERVRVR+ +  +    L  ++     +     R  ++  V +      
Sbjct: 184 WAEDPSNEDTRFERVRVRKALEHLAPLGLTPEVLASVARNMSKAREALDWYVFLAARDLA 243

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
            V   +++   +    +   +   LL  +     G    P    ME+ +   ++G    +
Sbjct: 244 HVQAGAVVLCQRKFRTLPVEISHRLLVRAVQWVSGAAYPPRRVPMEKAVQAARNGSSATL 303

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344
           +   +V    A  +W+ R    +  +   P +  +WDGR++ 
Sbjct: 304 AGCHLVST--AKQVWVCREYNAVNGVTALPGQ--LWDGRWKI 341


>gi|254488340|ref|ZP_05101545.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
 gi|214045209|gb|EEB85847.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
          Length = 419

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 150/336 (44%), Gaps = 25/336 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I VAVSGGSDS+ LL  LH      S         +VDH LR  A  E   V+D C 
Sbjct: 18  PKTIGVAVSGGSDSLALLHLLHDFAVTHS---CTLHVATVDHGLRREAGAEAAMVADTCR 74

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L + H V+ W+       L   AR+ARY L+++  +     +I   HT DDQ ET  MR
Sbjct: 75  SLGLDHEVLHWQGWDRSGNLQNEARKARYQLLADWGRRRQLDVIALGHTADDQAETFLMR 134

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GLS M D    +   WI RP L  RR  ++++L    I W +DPSN D R
Sbjct: 135 LARRAGVD--GLSAMPDRFEREGMTWI-RPLLGARRAALQAYLESNGIQWADDPSNEDTR 191

Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           ++RVR+R  +       ++  AL +  +     +  +N+ +      Y+++H    +AI 
Sbjct: 192 YDRVRIRNALSILEGIGVEAEALSVVAQNMSAAKDALNHQMQQTARAYVSLHA-GAVAID 250

Query: 254 QDILN-----IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
              LN     I   L+ + L+       G    P   ++  VM  L +      ++    
Sbjct: 251 VAGLNAQPFEIRRRLIAHALK----WVNGAYYAPRSAALGDVMAALATAP--SATLQGCE 304

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344
           +  R   LW+ R +R +  +     +  +WDGR++ 
Sbjct: 305 LRHRVGKLWVFRELRVVSRMTCDIRD--LWDGRWRI 338


>gi|254294754|ref|YP_003060777.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814]
 gi|254043285|gb|ACT60080.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814]
          Length = 473

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 10/221 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDR--SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           I +AVSGGSDS+GLL      LS            A+++DH +R  A  E  YV  +C  
Sbjct: 58  IGIAVSGGSDSLGLL-----CLSAEWAKLNNWHLQALTIDHGMRPEAAQEAVYVQSICET 112

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L I H+ ++W+  + Q      AR AR+ L  E AK  N   +M  HT DD+LET+ +R 
Sbjct: 113 LNIPHTTMNWRCPQDQRATQENARMARHLLFCEWAKRQNIQFLMLGHTLDDRLETLLIRE 172

Query: 140 QRDYAEKGMGL--SGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             + +E G+    S  C  I  +  +L + RP     R+D+ + L++ +ISW  DPSN D
Sbjct: 173 SSNSSEYGLAAMPSQSCSPIWPEGRDLKLLRPANNLTRQDLSAILIETDISWVCDPSNQD 232

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           D++ERVR+R+ +  +        ++K + L +K    V  L
Sbjct: 233 DKYERVRIRKKLEAMPQQVKQKSIEKLKKLTLKRQKLVTDL 273


>gi|170750723|ref|YP_001756983.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM
           2831]
 gi|170657245|gb|ACB26300.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM
           2831]
          Length = 345

 Score =  125 bits (315), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/184 (36%), Positives = 97/184 (52%), Gaps = 5/184 (2%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DS  L+   H+    R          +VDH LR  +  E   V      L 
Sbjct: 1   MLLAVSGGPDSSALM---HAAARLRDATGASLRVATVDHGLRSESGAEAEAVGRAARALG 57

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H++++W  +KP TGL  AAR ARYAL++ HA+ + A L++T HT DDQ ETV +R   
Sbjct: 58  LPHAILTWAGAKPGTGLQDAARRARYALLAAHAEAVGAGLVLTGHTRDDQAETVLIRLAA 117

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GL+GM         L + RPFL   +  + ++   R I++  DP+N D RF R
Sbjct: 118 GSGP--AGLAGMRAERDLGPGLALGRPFLHLPKASLVAWCAARGIAYARDPANGDPRFAR 175

Query: 202 VRVR 205
            R+R
Sbjct: 176 GRLR 179


>gi|294678709|ref|YP_003579324.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003]
 gi|294477529|gb|ADE86917.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003]
          Length = 429

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 106/206 (51%), Gaps = 19/206 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAIS 57
           + L   E+    VR+ +    + VAVSGGSDS+  L+   ALH V           +A++
Sbjct: 22  LLLWAAEAAVETVRTRMTAPRLAVAVSGGSDSLATLVLLSALHPV-----------AAVT 70

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           VDH LR  A  E   V   C+   I HS++ W     +  LM AAR AR  LI   A+  
Sbjct: 71  VDHGLRPEAAAEAEVVGQFCAERGIDHSILRWDGRGARGNLMDAARRARLRLIGAWAQDR 130

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRRED 176
               +   HT DDQ ET  MR  R   E G+ GLSGM ++   +  LW  RPFL   R +
Sbjct: 131 GIGAVALGHTGDDQAETFLMRLAR---EAGLEGLSGMRESFESEGVLWF-RPFLSQTRAE 186

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERV 202
           +R  L ++ I W EDPSN +DRF+RV
Sbjct: 187 LRGHLQRQGIGWIEDPSNENDRFDRV 212


>gi|126737230|ref|ZP_01752965.1| PP-loop family protein [Roseobacter sp. SK209-2-6]
 gi|126721815|gb|EBA18518.1| PP-loop family protein [Roseobacter sp. SK209-2-6]
          Length = 418

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 107/194 (55%), Gaps = 7/194 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGG DS+ LL  L S         ++  A +VDH LR+ + +E ++ ++V  
Sbjct: 21  PPRVGVAVSGGGDSLALLHLLKSCFDGE---PVEILAATVDHGLRKESAEEAKWTAEVAR 77

Query: 79  RLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            L + H V+ W++   +TG L   AR ARY+L++  A+     ++   HT DDQ ETV M
Sbjct: 78  GLGLRHEVLIWEDGPEETGNLQEQARHARYSLLTNWARRNGIPILTLGHTADDQAETVLM 137

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A    GL+G+      +  + + RP L  RRE +RS+L      W +DPSN D 
Sbjct: 138 RLSR--AGGVNGLAGIPQRRTLN-GVTLLRPLLEVRREALRSYLRDEGHDWIDDPSNDDS 194

Query: 198 RFERVRVRRFVRDI 211
           RFERVR R+ + ++
Sbjct: 195 RFERVRFRKALENL 208


>gi|163745828|ref|ZP_02153187.1| PP-loop family protein [Oceanibulbus indolifex HEL-45]
 gi|161380573|gb|EDQ04983.1| PP-loop family protein [Oceanibulbus indolifex HEL-45]
          Length = 423

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/194 (37%), Positives = 99/194 (51%), Gaps = 6/194 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGG DSM LL  LH + +       +  A++VDH LR  A  E  +V+    
Sbjct: 25  PPRLGVAVSGGGDSMALLSLLHGLCA---AAGTQLEAVTVDHGLRPEAATEAAFVAHHAG 81

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L + H  + W+    Q  L  AAREARY L+++ A   +   I   HT DDQ ETV MR
Sbjct: 82  ALGLPHETLQWRGWDGQGNLQNAAREARYRLMADWAARRDLPCIALGHTADDQAETVLMR 141

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GLS M          W+ RP L  RRE +R +L +  + W +DPSN D R
Sbjct: 142 LARRSGVD--GLSAMAPQSRRHGVTWL-RPLLFARRESLRDYLRRAGLEWVDDPSNDDPR 198

Query: 199 FERVRVRRFVRDID 212
           + R++ R+ +  +D
Sbjct: 199 YARIQTRQSLAALD 212


>gi|84501655|ref|ZP_00999827.1| PP-loop family protein [Oceanicola batsensis HTCC2597]
 gi|84390276|gb|EAQ02835.1| PP-loop family protein [Oceanicola batsensis HTCC2597]
          Length = 414

 Score =  122 bits (307), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 150/330 (45%), Gaps = 19/330 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VAVSGGSDS+ LL  LH   S      +   A++VDH LR  +  E   V ++  RL + 
Sbjct: 23  VAVSGGSDSLALLHLLHDWASGSG---LALHAVTVDHGLRADSAAEAACVGEIAGRLGVP 79

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H+V+ W        L   AR ARY L++E A+      I   HT DDQ ET+ MR  R  
Sbjct: 80  HTVLHWTGWDGAGNLSDRARRARYDLMAEWARGAGVAGIALGHTADDQAETLLMRLAR-- 137

Query: 144 AEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              G G++G+        +  ++  RP L  RR ++R +L  R+  W EDP+N D RF+R
Sbjct: 138 ---GSGVAGLAAMSPGRSHAGVTFLRPLLTVRRAELRRYLDARDQKWIEDPTNEDMRFDR 194

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            + RR +R+++     + AL +       LR  + +        ++      ++      
Sbjct: 195 PKARRALRELEPLGLTVEALNMVAGNMAALRKTLGHYAEAEARAHVQFEAGDVLIPCAAF 254

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
             +       +L+ +     G+   P    ++R++  +  G+   + +   +I  R + +
Sbjct: 255 GAMPGETARLILQAALHWVSGEEYPPRRGGIQRLVEAIARGE--GMPLSGCLIAIRDDTI 312

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQN 346
            I+R    +   +  P   T+WDGR++   
Sbjct: 313 RISREPAAVAETVAAP--GTLWDGRWRLTG 340


>gi|163742231|ref|ZP_02149619.1| PP-loop family protein [Phaeobacter gallaeciensis 2.10]
 gi|161384561|gb|EDQ08942.1| PP-loop family protein [Phaeobacter gallaeciensis 2.10]
          Length = 386

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 173/393 (44%), Gaps = 39/393 (9%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M L+  LH   +D     ++    +VDH LR T+ DE + V+   ++L +AH ++ W + 
Sbjct: 1   MALMHLLHECFADVG---VEICVATVDHGLRPTSGDEAQMVAGAAAKLGMAHDILQWCD- 56

Query: 93  KPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
           +P  G    L   AR ARYAL++  A+  + + +   HT DDQ ET+ MR  R     G 
Sbjct: 57  RPTAGQAGNLQEQARNARYALLTSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSG- 115

Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            LS M  +   +  + + RP L   RE++R++L  R   W EDPSN D RFERVRVR+ +
Sbjct: 116 -LSAMSRSRAME-GVTLLRPLLEVTREELRAYLRARECCWVEDPSNEDARFERVRVRQAM 173

Query: 209 RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS------- 261
               L  L L +++   +   +  A   L   Y  +  R +  +    + ID        
Sbjct: 174 E--ALEPLGLTVERLAAVARNMGAAREAL-DWYTFLAARDMAEVRDGAIVIDQRQFRTLP 230

Query: 262 -TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
             +   LL  S     G +  P    M +    ++ G  G  ++G   +  R    WI R
Sbjct: 231 DEIAHRLLVRSVQWVSGAVHPPRRDPMVKARDAVRHG--GSFTLGGCRMITRRQRTWICR 288

Query: 321 AVRNLPTLILYPEETTVWDGRYQF--QNLSDSLIQ-IGPQS------YRKADVPSGI--- 368
             + +   +  P    +WD R++     + D  ++ +GP        +R+A+VP  +   
Sbjct: 289 EYKPVAEEVALP--GKIWDQRWRVFGGEVQDHEVRALGPAGLLHCPDWRQAEVPGAVLQA 346

Query: 369 -PPIIAQRALSSMPSKEGGKPLLAPFSRFMTKF 400
            P +  Q  L + P    G    A   +   +F
Sbjct: 347 TPAVWKQDELIAAPLAGNGNGWTAELVQNSEEF 379


>gi|114799417|ref|YP_758891.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444]
 gi|122942816|sp|Q0C5V2|TILS_HYPNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|114739591|gb|ABI77716.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 367

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 132/237 (55%), Gaps = 25/237 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGGSDS+ LLI  H   + R  G++   A++VDH LR  ++ E   V  +C+ + 
Sbjct: 27  VGVAVSGGSDSLALLILAHRWAARR--GRV-LRALTVDHGLRPESRAEAEAVGRLCADMG 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H ++  + + P+    +A R  R+A ++      +  L++T HT DDQ ET  MR+++
Sbjct: 84  IEHDILRLEGAAPR---QSALRRGRHAALARTIADKSGHLLLTGHTADDQAETFLMRARQ 140

Query: 142 DYAEKGMGLSGMCDTILYDL-----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                  GL+GM    L  +      ++I+RP L  RRE +R+FL    + W +DPSN +
Sbjct: 141 GSGW--YGLAGMRPLSLSPVWPEGEGVFIARPLLGIRREALRAFLRDEGLGWADDPSNDN 198

Query: 197 DRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             FERVR+RR +     R++ + +L   + +FQ LR+  + A    I +++T ++R+
Sbjct: 199 PAFERVRMRRLLCPEMSRNVPVLSL---VDRFQTLRMIEDGA----IWRWMTANVRA 248


>gi|84687702|ref|ZP_01015575.1| PP-loop family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664285|gb|EAQ10776.1| PP-loop family protein [Rhodobacterales bacterium HTCC2654]
          Length = 417

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 106/186 (56%), Gaps = 8/186 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +++VAVSGG DSM LL    +    R+ GK   SA++VDH LR+ A  E   V+++C+ L
Sbjct: 22  NLVVAVSGGGDSMALLHVAQAW--GRTQGK-AVSALTVDHGLRDEAATEAARVAEICADL 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +AH  + W +   Q  L A AR ARY LI++ A    A LI   HT DD  ET  MR  
Sbjct: 79  GVAHRTLDWPDWDGQGNLQAMARAARYDLIADAAPAGAAILI--GHTMDDAAETFLMRLA 136

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLS M  T     +LW+ RPFL  RR  +R +L  R I W +DP+N D +++
Sbjct: 137 RGSGVD--GLSRMRSTWTDRGHLWL-RPFLTVRRAALRDWLHDREIGWIDDPTNDDTQYD 193

Query: 201 RVRVRR 206
           RVR+R+
Sbjct: 194 RVRMRQ 199


>gi|114706794|ref|ZP_01439694.1| PP-loop family protein [Fulvimarina pelagi HTCC2506]
 gi|114537742|gb|EAU40866.1| PP-loop family protein [Fulvimarina pelagi HTCC2506]
          Length = 458

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 159/344 (46%), Gaps = 28/344 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +L+AVSGG DS+ LL+ L S L +  F      A +V+H LR  A  E  +V++V  
Sbjct: 37  PQRLLIAVSGGPDSLALLV-LASRLPNLVF---AVHAATVNHGLRREADMEAAHVAEVSQ 92

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           RL + H  ++W+       L AAAREARY L++E A+ I A+ I+TAH   DQ+ETV   
Sbjct: 93  RLGVPHETLTWEGWDGSGNLQAAAREARYRLLAEEARRIGASAILTAHHRGDQIETVLQA 152

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R   E    L+GM  +   +  L + RPFL    E + + L +  I+  +DPSN D R
Sbjct: 153 LERGDREN--RLAGMRASRDLEPRLTLVRPFLEIPAEQLWAVLAEAGIASVDDPSNADRR 210

Query: 199 FERVRVR---------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           F RVR R         R    +D+       +  +++ +    +  M     +       
Sbjct: 211 FTRVRHRHAIAGMSDERIADIMDVQRRAAATRAREEIALAGTVSTMMAHGDLIFTEEGGG 270

Query: 250 IAISQDILNI-----DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VS 303
           +AI  D   +        LL  ++R +    GG    P   ++ R+   L+    GC  +
Sbjct: 271 VAIGMDAFRVMPSVEAEDLLARVVRAA----GGSTRPPERSAVARLAQKLRGRAEGCATT 326

Query: 304 IGRVVIDRRANFLWITR--AVRNLPTLIL-YPEETTVWDGRYQF 344
           +G   +    N + I R      LP++   +  +  V+DGR+  
Sbjct: 327 LGGARLLNDGNVIQIHREYGRTGLPSIAEPWRLDRLVFDGRFDI 370


>gi|149915623|ref|ZP_01904149.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b]
 gi|149810515|gb|EDM70358.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b]
          Length = 417

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 25/338 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           P  + VAVSGGSDS+GLL+    VL+D R  G     A++VDH LR  A  E   V+  C
Sbjct: 21  PERLAVAVSGGSDSLGLLV----VLNDWRLAGGPALHAVTVDHRLRPEAAQEAAKVAADC 76

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            RL + H +++W +   +  L   AR ARY L+++ A+      I  AHT DDQ ET  M
Sbjct: 77  KRLGVPHDILTWTDWDGRGNLSDQARRARYGLMAQWARGQGIACIAIAHTADDQAETFLM 136

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R       GLS M +       +   RP L   R ++R+ L  R ++W EDPSN D 
Sbjct: 137 RLARGAGVD--GLSAMSER-FESHGVTFCRPALAIFRHELRAALEGRGMTWVEDPSNEDP 193

Query: 198 RFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           R+ERV+ R  +++     I    L     +  D+R  +         +++ +    +I  
Sbjct: 194 RYERVKARAALQELAPLGITTAGLLAMAHRMSDVRQTLYLYALEAARQHVRIQSGDLIVD 253

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK----RGCVSIGRVV 308
                 +       +++ S     G   +P  R+++ ++  +  G+    +GC      +
Sbjct: 254 RPGFDGLPRETARRIMQTSLKWISGAEYVPRGRAVDDLLDAIAEGRDMTLQGC------L 307

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346
           +  R + L ITR  + + +     + T VWDGR++ + 
Sbjct: 308 VTLRKDHLRITREWKAVASERC--QVTHVWDGRWRLEG 343


>gi|119383441|ref|YP_914497.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222]
 gi|119373208|gb|ABL68801.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222]
          Length = 409

 Score =  120 bits (301), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 143/332 (43%), Gaps = 27/332 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS  L+   H       +G+ +  A +VDH LR  + DE R      + L I 
Sbjct: 26  IALSGGGDSTALMHLAHG------WGRARLLAATVDHGLRPGSADEARQAGLAAAALDIP 79

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H  + W   +    LMAAAREAR  L++  A     + ++  HT DDQ ET+ MR  R  
Sbjct: 80  HETLRWTR-RGGGNLMAAAREARLQLLAGWAGRHGLSAVLLGHTLDDQAETLLMRLNRGA 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G  LS M          W+ RP L   R D+R +L  R + W +DPSN ++ FERVR
Sbjct: 139 GVDG--LSAMAPMREAFGVTWL-RPMLEIGRADLRHWLAARGLGWADDPSNENEDFERVR 195

Query: 204 VRRFVRDIDLHALYL-----KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           VR+ +  +DL    L      +   +D      + VA             + A     L 
Sbjct: 196 VRKAIAALDLPMRQLAQSAANLAMARDALCDFASRVAEGAQSRAGSLALPLDAFRAAPLE 255

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
           I   LL   LR      GG    P    +   +  L+ G R  +++  V+ + R  FLW+
Sbjct: 256 IRRRLLVAGLR----FVGGSDYPPRRGPLLHALAVLEDGGR--LTLEGVIAEPRDGFLWL 309

Query: 319 TRAVRNLPTLILYPEET---TVWDGRYQFQNL 347
              VR     +  P       +WD R+Q   L
Sbjct: 310 ---VREPAAALRSPAAEGADAIWDRRWQVAGL 338


>gi|221640121|ref|YP_002526383.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131]
 gi|221160902|gb|ACM01882.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131]
          Length = 412

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 157/329 (47%), Gaps = 24/329 (7%)

Query: 24  VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +AVSGG DSM LL +A  + ++ R        A++VDH LR  A DE R V+ VC+ L +
Sbjct: 21  LAVSGGGDSMALLHLAAETGIATR--------AVTVDHGLRPEAADEARAVARVCAGLGV 72

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H ++ W+    +  LM  AR AR  LI++ A+      +   HT DD  ET  MR  R 
Sbjct: 73  PHDILRWEGWDGRGNLMDQARRARLRLIADWARAAGLEAVALGHTRDDVAETFLMRLARG 132

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL+ M      +  +W+ RP L   RE++R+ L +R  SW EDPSN +  FERV
Sbjct: 133 AGVD--GLAAMQAVRRAEGMVWL-RPLLGIGREELRADLRRRGASWIEDPSNDNPAFERV 189

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLR---VKVNNAVAMLIPKY---LTVHMRSIIAISQDI 256
           RVR+ +    L  L L+ ++  D+     +V +A+ + + +    L    R  + ++   
Sbjct: 190 RVRQAME--SLADLGLRPERLADVASHLAEVRDALDLQLREAAGRLAQVDRGDVVLASAA 247

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L +   +L  LLR +          P   ++ + +  L  G    V++    +  R   L
Sbjct: 248 LELPPEILRRLLRAALQWVASAEYGPRGPALGQAIRRLSEGT--TVTLHGCRLAPRREGL 305

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQ 345
            I R  + + +++    E   WDGR+  Q
Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQ 332


>gi|163738352|ref|ZP_02145767.1| PP-loop family protein [Phaeobacter gallaeciensis BS107]
 gi|161388273|gb|EDQ12627.1| PP-loop family protein [Phaeobacter gallaeciensis BS107]
          Length = 386

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 173/393 (44%), Gaps = 39/393 (9%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M L+  LH   +D     ++    +VDH LR T+ +E + V+   ++L +AH ++ W + 
Sbjct: 1   MALMHLLHECFADVG---VEICVATVDHGLRPTSGEEAQMVAGAAAKLGMAHDILQWCD- 56

Query: 93  KPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
           +P  G    L   AR ARYAL++  A+  + + +   HT DDQ ET+ MR  R     G 
Sbjct: 57  RPTAGQAGNLQEQARNARYALLTSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSG- 115

Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            LS M  +   +  + + RP L   RE++R++L  R   W EDPSN D RFERVRVR+ +
Sbjct: 116 -LSAMSRSRAME-GVTLLRPLLEVTREELRAYLRTRECCWVEDPSNEDARFERVRVRQAM 173

Query: 209 RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS------- 261
               L  L L +++   +   +  A   L   Y  +  R +  +    + ID        
Sbjct: 174 E--VLEPLGLTVERLAAVARNMGAAREAL-DWYTFLAARDMAEVCDGAIVIDQRQFRTLP 230

Query: 262 -TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
             +   LL  S     G +  P    M +    ++ G  G  ++G   +  RA   WI R
Sbjct: 231 DEIAHRLLVRSVQWVSGAVHPPRRDPMIKARDAVRHG--GSFTLGGCRMITRAQRTWICR 288

Query: 321 AVRNLPTLILYPEETTVWDGRYQF--QNLSDSLIQ-IGPQS------YRKADVPSGI--- 368
             + +   +  P    +WD R++     + D  ++ +GP        +R+ +VP  +   
Sbjct: 289 EYKPVAEEVALP--GKIWDQRWRVFGGEVQDHEVRALGPAGLLHCPDWRQTEVPGAVLQA 346

Query: 369 -PPIIAQRALSSMPSKEGGKPLLAPFSRFMTKF 400
            P +  Q  L + P    G    A   +   +F
Sbjct: 347 TPAVWKQDELIAAPLAGNGNGWTAELVQNSEEF 379


>gi|110679379|ref|YP_682386.1| hypothetical protein RD1_2100 [Roseobacter denitrificans OCh 114]
 gi|109455495|gb|ABG31700.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 414

 Score =  119 bits (298), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/188 (39%), Positives = 97/188 (51%), Gaps = 6/188 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGGSDSM LL+ L    ++R+   +  S  +VDH LR  A DE R V+  C+
Sbjct: 17  PKALGVAVSGGSDSMALLVLLCG-FAERN--GVALSCATVDHGLRPEAADEARSVAGYCA 73

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              + H  + W+          AAR ARY L+++ A+      I   HT DDQ ETV M 
Sbjct: 74  AHDVPHVTLKWEGWDGTGNTQNAARVARYRLLADWARGQGIADIALGHTQDDQAETVLMG 133

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R  A    GLS M      D  L   RP L   R  +R FL    ++WCEDPSN D +
Sbjct: 134 LAR--ASGVDGLSAM-PARRDDRGLCWHRPLLATSRAGLRGFLSANGVAWCEDPSNDDAQ 190

Query: 199 FERVRVRR 206
           FER++ RR
Sbjct: 191 FERIKARR 198


>gi|83954494|ref|ZP_00963205.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1]
 gi|83840778|gb|EAP79949.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1]
          Length = 419

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 149/337 (44%), Gaps = 15/337 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGG DS+ LL  L+     R    I   A +VDH LR  A  E   V+  C 
Sbjct: 18  PPVLGVAVSGGGDSVALLHLLNDYARSRG---IALRAATVDHGLRPEAAREAAMVAAQCR 74

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L + H  + W        L   AR+ARY L+++ A+      +   HT DD  ET  MR
Sbjct: 75  ALGVPHDTLMWTGWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHTADDLAETFVMR 134

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G  LS M   I     +   RP L  RR D+R+ L QR ++W +DPSN DD 
Sbjct: 135 LGRRAGVDG--LSAM-PAIFDRHGMRWHRPLLNARRADLRAHLTQRGVTWVDDPSNEDDS 191

Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           F RVR+R+ +       +D  AL    +   D R  ++  +      +  V   ++    
Sbjct: 192 FARVRIRKALAVLTDLGVDSAALADVSRHLADARTALDAQMFAAARAHAHVQCGAVAMDW 251

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           Q + ++ +     LL  + A   G    P   ++  V+  L     G  ++    +  + 
Sbjct: 252 QALCDLPTETRRRLLTHTIAWINGATYAPRSSAVAEVLTALDDA--GAATVQGCELRLKH 309

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350
           + LWI R ++ +   +  P +  +WDGR++ +   D+
Sbjct: 310 DKLWIYRELQAV-RAVDAPAD-ALWDGRWRLEPCGDT 344


>gi|39934200|ref|NP_946476.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           CGA009]
 gi|61216538|sp|Q6NAQ6|TILS_RHOPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|39648048|emb|CAE26568.1| YaeN protein [Rhodopseudomonas palustris CGA009]
          Length = 346

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 13/210 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISV 58
           +S  E+ R F      PA I++AVSGG DS+ L+      L+ R    +K     + ++V
Sbjct: 9   VSATEARRLFADWKAAPA-IVLAVSGGPDSLALMW-----LAARWRKALKRGPALAVVTV 62

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH LR  A  E R V  + + L + H  + W   KP TG+ AAAR ARY L+++ AKT+ 
Sbjct: 63  DHGLRPEAAAEARAVKRLAASLDLPHRTLRWSGDKPSTGIQAAARGARYRLLAKAAKTLG 122

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A+ +MTAHT DDQ ETV MR  R       GL+ M   I  D  + ++RP L   +  + 
Sbjct: 123 ASHVMTAHTRDDQAETVLMRLSRGSGI--AGLAAMAREIERD-GVVLARPLLDVPKARLI 179

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           + L +  I++  DPSN D RF R R+R  +
Sbjct: 180 ATLAKARIAFATDPSNADPRFTRPRLRELM 209


>gi|126463079|ref|YP_001044193.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104743|gb|ABN77421.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029]
          Length = 412

 Score =  117 bits (292), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 130/255 (50%), Gaps = 20/255 (7%)

Query: 24  VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +AVSGG DSM LL +A  + ++ R        A++VDH LR  A DE R V+ VC+ L +
Sbjct: 21  LAVSGGGDSMALLHLAAEAGIATR--------AVTVDHGLRPEAADEARAVARVCAGLGV 72

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H ++ W+    +  LM  AR AR  LI+  A+      +   HT DD  ET  MR  R 
Sbjct: 73  PHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLARG 132

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL+ M      +  +W+ RP L   RE++R+ L +R  SW EDPSN +  F+RV
Sbjct: 133 AGVD--GLAAMQAVRRAEGMVWL-RPLLGIGREELRADLRRRGASWIEDPSNDNPAFDRV 189

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLR---VKVNNAVAMLIPKY---LTVHMRSIIAISQDI 256
           RVR+ +    L  L L+ ++  D+     +V +A+ + + +    L    R  + ++  +
Sbjct: 190 RVRQAME--SLADLGLRPERLADVAGHLAEVRDALDLQLREAAGRLARVDRGDVVLAPPV 247

Query: 257 LNIDSTLLFYLLRVS 271
           L +   +L  LLR +
Sbjct: 248 LELPPEILRRLLRAA 262


>gi|189184491|ref|YP_001938276.1| MesJ protein [Orientia tsutsugamushi str. Ikeda]
 gi|226695543|sp|B3CUJ5|TILS_ORITI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|189181262|dbj|BAG41042.1| MesJ protein [Orientia tsutsugamushi str. Ikeda]
          Length = 441

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 162/338 (47%), Gaps = 30/338 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGGSDS+ L++ +    +++  G+I  + +++DH LR  +  E  YVS +C  +++ 
Sbjct: 25  IAVSGGSDSLALMLLVKH-WNEKVKGEI--TILTIDHHLRSESTSEADYVSSICQNIKLQ 81

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H  + W +      + A AR+ARY L++ + +  +   ++T H  DD +E  ++R  R  
Sbjct: 82  HVTLHWIHKGITGNIQAQARKARYQLLTNYCQEHDILHLITGHHADDIVENFFIRLLR-- 139

Query: 144 AEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              G GL+G+    L+ + N+ I RP     ++D++ +L Q+NI W  DPSN+ +++ R 
Sbjct: 140 ---GAGLAGLSSHNLFFVNNVRIIRPLFNITKQDLKKYLEQQNIKWINDPSNSSNKYLRT 196

Query: 203 RVRRFVRDIDL---HALYLKMKKFQDLRVK---------VNNAVAMLIPKYLTVHMRSII 250
           +VR  ++ + +   H   +++ K + +  +         VNN +   +   + ++     
Sbjct: 197 QVRDLLKSMLISFQHNFTVELLKKRIMLSQMHLTQALESVNNEIIHYVVHVVKIYSAGFA 256

Query: 251 AISQDILNIDS-----TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
            I + +    S      +L YLL     I G     P + S++R+ L          ++ 
Sbjct: 257 VIDRKLFKKASPEARYAILSYLL----MIVGANTKPPRFSSLQRISLHDIQEYNTYKTLH 312

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQ 343
             +++    ++ I R       +      + VWD R++
Sbjct: 313 GCIVEYSIEYIIIYREFGRCYPISQVVSNSVVWDYRFK 350


>gi|254473236|ref|ZP_05086634.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062]
 gi|211957957|gb|EEA93159.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062]
          Length = 441

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 158/347 (45%), Gaps = 26/347 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + VSGG+DSM LL  L     +  F   K  A +V+H LR  A  E   V+  C+R+ 
Sbjct: 29  IAIGVSGGADSMALLYLLKQWTQELGFAAPKLYAFTVNHGLRAEAASEAVGVAQYCTRIE 88

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H  + W+  KP + + +AAR+AR+ L+ + ++      +  AH  +DQ ET   R  R
Sbjct: 89  VPHETLLWEGDKPSSNIQSAARDARHRLLRQASEDHGCDALFLAHHLEDQAETFLTRLAR 148

Query: 142 DYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G G+ G+   I  D  +    I RP L   +  +++ L   ++ W EDPSN D++
Sbjct: 149 -----GSGVYGLA-CIRRDREMDGFHICRPLLNISKARLKAVLHSAHVPWFEDPSNEDEQ 202

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R++ R+   ++D   L L   K  D   ++  A   +      V  +S    S   + 
Sbjct: 203 FTRIKFRQAQSELD--ELGLTATKLFDTARRMARAADAIDVWVDEVAEKSCTFHSAGPVR 260

Query: 259 IDSTLLFYL-----LRVSAAIC---GGQISLPGYRSMERVMLFLKS--GKRGCVSIG-RV 307
            DS+ L Y+     LR+   +     G   +P    +E +   LKS  G R     G R 
Sbjct: 261 FDSSCLEYIPDEIGLRLVGRLVRYISGAPYMPRLAKLEGLYETLKSEEGARAATLGGVRF 320

Query: 308 VIDR-RANFLWIT--RAVR-NLPTLILYPEETTVWDGRYQFQNLSDS 350
            + +   + +W     A R  LP + + P +  +WD R++++    S
Sbjct: 321 ALAKPHEDGIWFCFREAGRAGLPEVEVKPGDEGIWDERWRYKAAHSS 367


>gi|192289726|ref|YP_001990331.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192283475|gb|ACE99855.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 346

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 13/210 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISV 58
           +S  E+ R F      PA I++AVSGG DS+ L+      L+ R    +K     + ++V
Sbjct: 9   VSATEARRLFADWKAAPA-IVLAVSGGPDSLALMW-----LAARWRKSLKQGPALAVVTV 62

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH LR  A  E R V  + + L + H  + W   KP TG+ AAAR ARY L++  AKT+ 
Sbjct: 63  DHGLRPEAAAEARAVKRLAASLDLPHRTLRWSGDKPSTGIQAAARGARYRLLANAAKTLG 122

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A+ +MTAHT DDQ ETV MR  R       GL+ M   I  D  + ++RP L   +  + 
Sbjct: 123 ASHVMTAHTRDDQAETVLMRLSRGSGI--AGLAAMAREIERD-GVVLARPLLDVPKARLI 179

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           + L +  I++  DPSN D RF R R+R  +
Sbjct: 180 ATLAKARIAFATDPSNADPRFTRPRLRELM 209


>gi|254454426|ref|ZP_05067863.1| tRNA(Ile)-lysidine synthetase [Octadecabacter antarcticus 238]
 gi|198268832|gb|EDY93102.1| tRNA(Ile)-lysidine synthetase [Octadecabacter antarcticus 238]
          Length = 412

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 185/408 (45%), Gaps = 31/408 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGGSDS  L+      L+  S  + +   I+VDH LR  A DEV  V+     L 
Sbjct: 10  VVLAVSGGSDSTALMH-----LAAGSIDRARLHVITVDHGLRGVA-DEVALVAAQSEDLA 63

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI-MTAHTFDDQLETVYMRSQ 140
           + HSV++W+    Q  L AAAR  R+A I++ A    A +  MT HT DDQ ETV MR  
Sbjct: 64  LKHSVLNWQWDG-QGNLQAAARIGRWAAIAQWAADQPADVCCMTGHTHDDQAETVLMRLA 122

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G  L+GM         L I RP L+  R D+R++L +  ++W +DPSN D RF+
Sbjct: 123 RGSGVAG--LAGMQSVGATPTGLRICRPLLQETRADLRAWLSEHGVTWSDDPSNDDLRFD 180

Query: 201 RVRVRRF---VRDIDLHA--LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           RV+ R     + ++ L +  L       Q  R ++ +  AM+   ++T  +  ++  +  
Sbjct: 181 RVKARGMQDALGELGLTSDRLVQTAAHMQAARREMTDYAAMIAQSHITQSVGDVVFPATW 240

Query: 256 ILNIDSTL------LFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
             + D  +      L ++         G    P  RS   + L+  +      ++   ++
Sbjct: 241 PNHGDVAIRLFRHALHFVGGGVGCGGAGGGDYP-PRSDATLSLWQAAQDGQGGTLHGCLV 299

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRK-----A 362
               +   I+R V   P    +P       WD R+    +S +  Q G  + R       
Sbjct: 300 SVEDDHWRISREVAATPAPTSWPNRNRDLRWDNRWLLSEISGANTQ-GDLTVRALGDAIK 358

Query: 363 DVPSGIPPIIAQRALSSMPSK-EGGKPLLAPFSRFMTKFDLPVAYAFS 409
           DVP+     + +R+L + P+  EG   + AP +   + FD  +   F+
Sbjct: 359 DVPNWRDVGLPRRSLMASPAVFEGESLVAAPIAGHQSGFDARIVADFA 406


>gi|75676895|ref|YP_319316.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255]
 gi|74421765|gb|ABA05964.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255]
          Length = 371

 Score =  116 bits (290), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 12/188 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISVDHCLRETAKDEVRYVSDVC 77
           +++AVSGG DS+ L+      L+ R    +K      A++VDH LR  A  E R V  + 
Sbjct: 40  LVLAVSGGPDSVALMW-----LAARWRRAMKRGPDLVAVTVDHALRREAAREARQVKQLA 94

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I H  + W   KP TGL AAAREARYAL+ + A+++ A+ ++T HT DDQ ETV M
Sbjct: 95  KSLSIPHRTLRWTGPKPATGLPAAAREARYALLFKAARSLGASHVLTGHTLDDQAETVLM 154

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R       GLS M    + D    + RP L   +  + + L +  I + EDP+N D 
Sbjct: 155 RISRGSGI--AGLSAMSRETMRD-GFVLVRPLLNVPKARLIATLKKAKIDYAEDPTNRDL 211

Query: 198 RFERVRVR 205
            F R R+R
Sbjct: 212 GFTRPRLR 219


>gi|254510246|ref|ZP_05122313.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221533957|gb|EEE36945.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 417

 Score =  116 bits (290), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 184/421 (43%), Gaps = 48/421 (11%)

Query: 4   SPIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           S  +++R  +R+ +    P  + VAVSGGSDS  L+  L  +       +I   A +VDH
Sbjct: 3   SDADTLRAEIRARLPDPLPRRLGVAVSGGSDSTALMRLLADIAQRE---QIALFAATVDH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  A  E   V+++     I H  + W+       L   AR ARY L++  A+     
Sbjct: 60  GLRADAASEAATVANLAHNWGIPHETLKWRGWDGTGNLQDHARRARYRLLTGWAQANGLG 119

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---CDTILYDLNLWISRPFLRCRRED 176
            I   HT DDQ ET+ MR  R     G+  ++GM    +T+L        RP L   R  
Sbjct: 120 AIALGHTADDQAETLLMRLARAAGVSGLSAMAGMRREGETLLL-------RPMLAVTRAR 172

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA- 235
           +R +L  + I+W +DPSN D RF+R++ R+ +    L  + +  +     RV  N A A 
Sbjct: 173 LRDYLTAQGIAWIDDPSNQDLRFDRIKTRQALS--GLTQIGITAESLS--RVAENLAQAR 228

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR------VSAAI--CGGQISLPGYRSM 287
             + +Y       ++ +    L +D      L        V AAI    G    P + ++
Sbjct: 229 EALAQYAQESAAGVMRVMDGDLCVDPEGFAALPEEIRRRLVVAAILWVAGGAYPPRHGAV 288

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
           ++ +  L +G+R  +++G  ++  R    WI+R +  +      P E   WDGR+     
Sbjct: 289 DQALNALSAGQR--MTVGGCILSFRGKKTWISRELNAVSHKTANPGEP--WDGRWIVTGP 344

Query: 348 SDSLIQIGPQSYRKADVPSGIPPIIAQR-------ALSSMPSKEGGKPLL-APFSRFMTK 399
           +      GP +  +A   +GI  +   R       AL S P+   G  LL AP + F   
Sbjct: 345 T------GPDAEIRALGDAGILQLEDWRSVAKPRTALLSTPAVWAGDTLLAAPLAGFAQG 398

Query: 400 F 400
           +
Sbjct: 399 W 399


>gi|163733524|ref|ZP_02140967.1| hypothetical protein RLO149_17773 [Roseobacter litoralis Och 149]
 gi|161393312|gb|EDQ17638.1| hypothetical protein RLO149_17773 [Roseobacter litoralis Och 149]
          Length = 414

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGGSDSM LL+ L    +     +I  S  +VDH LR  A  E   V+  C+
Sbjct: 17  PKALGVAVSGGSDSMALLVLLRDYAARN---RIALSCATVDHGLRPEAAAEAEGVAAYCA 73

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              + H  + W     +     AAR ARY L+++ A+    T I   HT DDQ ETV M 
Sbjct: 74  AHDVPHVTLKWTGWNGKGNTQNAARVARYRLLADWARGQGITDIALGHTQDDQAETVLMG 133

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R  A    GLS M      D  L   RP L   R  +R FL  R ++WCEDPSN DD+
Sbjct: 134 LAR--ASGVDGLSAMA-ARRDDRGLCWHRPLLAMSRAQLRGFLRGRGVAWCEDPSNEDDQ 190

Query: 199 FERVRVRR 206
           FER++ RR
Sbjct: 191 FERIKARR 198


>gi|254475444|ref|ZP_05088830.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11]
 gi|214029687|gb|EEB70522.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11]
          Length = 383

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 21/320 (6%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL  LH   +D     +     +VDH LR+ + DE   V+   ++L ++H V+ W++ 
Sbjct: 1   MALLHLLHDCFADVG---VTLCVATVDHGLRDGSHDEAMMVAAEAAKLGLSHDVLEWRDR 57

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
                L   AR ARY L++  A+  + ++I   HT DDQ ET+ MR  R  A    GLS 
Sbjct: 58  PEGGNLQDEARNARYGLLTNWARINDLSVIALGHTADDQAETLLMRLGR--ASGVSGLSA 115

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           M      D  + + RP L   R+ +R++L ++ ++W +DPSN D RFER+R+R+ +    
Sbjct: 116 MPRMRAMD-GVSLMRPLLDVTRDQLRAYLRKKQVAWVDDPSNEDTRFERIRIRQAM--AS 172

Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLL 264
           L  + L +++   +   +  A   L   Y  +  R ++ I    + ID          + 
Sbjct: 173 LAPIGLTVERLAAVAQNLGAAREAL-DWYTFLAAREMLEIRDGAIVIDQREFRTLPDEIA 231

Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
             LL  +    GG +  P    M +     + G  G  ++    I  R   +WI R V+ 
Sbjct: 232 HRLLVRAVQWVGGAVYPPRRDPMMQAQRTARQG--GSFTLAGCRILTRVQKVWICREVKR 289

Query: 325 LPTLILYPEETTVWDGRYQF 344
           +   ++ P  T  WDGR++ 
Sbjct: 290 VADEVVEPGAT--WDGRWRI 307


>gi|332559126|ref|ZP_08413448.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N]
 gi|332276838|gb|EGJ22153.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N]
          Length = 412

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 130/255 (50%), Gaps = 20/255 (7%)

Query: 24  VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +AVSGG DSM LL +A  + ++ R        A++VDH LR  A DE R V+ VC+ L +
Sbjct: 21  LAVSGGGDSMALLHLAAEAGIATR--------AVTVDHGLRPEAADEARAVARVCAGLGV 72

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H ++ W+    +  LM  AR AR  LI+  A+      +   HT DD  ET  MR  R 
Sbjct: 73  PHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLARG 132

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL+ M      +  +W+ RP L   RE++R+ L +R  SW EDPSN +  F+RV
Sbjct: 133 AGVD--GLAAMQAVRRAEGMVWL-RPLLGIGREELRADLRRRGASWIEDPSNDNPAFDRV 189

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLR---VKVNNAVAMLIPKY---LTVHMRSIIAISQDI 256
           R+R+ +    L  L L+ ++  D+     +V +A+ + + +    L    R  + ++  +
Sbjct: 190 RMRQAME--SLADLGLRPERLADVAGHLAEVRDALDLQLSEAAGRLARVDRGDVVLAPPV 247

Query: 257 LNIDSTLLFYLLRVS 271
           L +   +L  LL+ +
Sbjct: 248 LELPPEILRRLLQAA 262


>gi|148285169|ref|YP_001249259.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong]
 gi|166988062|sp|A5CFP2|TILS_ORITB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|146740608|emb|CAM81262.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 441

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 107/189 (56%), Gaps = 9/189 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG+DS+ L++ +    +++  G+I  + +++DH LR  +  E  YVS +C  +++ 
Sbjct: 25  IAVSGGTDSLALMLLVKH-WNEKVKGEI--TVLTIDHHLRSESTSEADYVSSICQNIKLQ 81

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H  + W +      + A AR+ARY L++ + +  +   ++T H  DD +E  ++R  R  
Sbjct: 82  HVTLHWIHKGITGNIQAQARKARYHLLTNYCQEHDILHLITGHHADDIVENFFIRLLR-- 139

Query: 144 AEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              G GL+G+    I +  N+ I RP     ++D++ +L Q+NI W  DPSN  +++ R 
Sbjct: 140 ---GAGLAGLSSHNIFFVNNVRIIRPLFNITKQDLKKYLEQQNIKWINDPSNNSNKYLRT 196

Query: 203 RVRRFVRDI 211
           +VR  ++ +
Sbjct: 197 QVRDLLKSM 205


>gi|163854237|ref|YP_001642280.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1]
 gi|163665842|gb|ABY33209.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1]
          Length = 342

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 102/187 (54%), Gaps = 12/187 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+     PA  L+AVSGG DS  L+ A          G+  F   +VDH LR  + DE R
Sbjct: 19  FLEEPARPA--LLAVSGGPDSTALMHAAARA------GRDLFRVATVDHALRPGSADEAR 70

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            V  + + L + H++++W   +  + + A+AR ARY L+++HA  I A LI+TAHT DDQ
Sbjct: 71  AVGRLATELGLIHTILTWDAPRHGSRIQASARGARYRLLTDHAARIGAGLILTAHTLDDQ 130

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ETV MR     A  G  GL+GM +  +    + + RPFL   + D+ ++     + +  
Sbjct: 131 AETVLMRL---IAGSGPSGLAGMREERVLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLR 187

Query: 191 DPSNTDD 197
           DPSNTD+
Sbjct: 188 DPSNTDE 194


>gi|77464237|ref|YP_353741.1| cell cycle protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388655|gb|ABA79840.1| Probable cell cycle protein [Rhodobacter sphaeroides 2.4.1]
          Length = 412

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 107/204 (52%), Gaps = 14/204 (6%)

Query: 24  VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +AVSGG DSM LL +A  + ++ R        A++VDH LR  A DE R V  VC+ L +
Sbjct: 21  LAVSGGGDSMALLHLAAEAGIATR--------AVTVDHGLRPEAADEARAVGRVCADLGV 72

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H ++ W+    +  LM  AR AR  LI+  A+      +   HT DD  ET  MR  R 
Sbjct: 73  PHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLARG 132

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL+ M      +  +W+ RP L   RE++R+ L +R  SW EDPSN +  F+RV
Sbjct: 133 AGVD--GLAAMQAVRRAEGMVWL-RPLLGIGREELRADLRRRGASWIEDPSNDNPAFDRV 189

Query: 203 RVRRFVRDIDLHALYLKMKKFQDL 226
           R+R+ +    L  L L+ ++  D+
Sbjct: 190 RMRQAME--SLADLGLRPERLADV 211


>gi|254503322|ref|ZP_05115473.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11]
 gi|222439393|gb|EEE46072.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11]
          Length = 459

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 156/337 (46%), Gaps = 19/337 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGG DS+ LL+A     S R++ +     + VDH LR  +  E  +V ++  +
Sbjct: 34  SKIALAVSGGGDSVCLLLAFCEWRSRRNW-EGACEVVVVDHQLRPESSQEACFVRELSEQ 92

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   ++ W + KP+TG+  AAR ARY LI++         ++ AH  DDQ ET   R 
Sbjct: 93  HGLRCHILKWTDDKPETGVQEAARGARYQLIAKQTAVSGFEAVLLAHHLDDQAETFLDRL 152

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G+G +   D       L + RPFL   +  + + L +R+  WC+DPSN   ++
Sbjct: 153 TRGSGLNGLG-AMASDEPEGPAGLRLLRPFLGVPKSRLLATLEERDQKWCDDPSNKSLKY 211

Query: 200 ERVRVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           +R R+R     +    L         ++ +  R  +   +A L  +++  H    +  S 
Sbjct: 212 KRSRLRSISSTLSEEGLSPSRIATTARQLRRAREALEMVLAELFRQHVEEHPAGPVKTST 271

Query: 255 DILNIDST------LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
            +    S       L+  + RV+     G++  P  R +E +  ++ +   G  ++G  V
Sbjct: 272 LVFRAQSEEFRLRLLILMIERVT-----GRVYQPKLRKIEALDHWILNNNAGRQTLGGAV 326

Query: 309 IDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQF 344
           ++ + + L++ + + R+ P ++        WD R+ F
Sbjct: 327 LEIKRDTLFVWKEIGRSPPEVLENLRGEGNWDARFLF 363


>gi|307944549|ref|ZP_07659889.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4]
 gi|307772298|gb|EFO31519.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4]
          Length = 446

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 157/351 (44%), Gaps = 25/351 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + VSGG+DS+ LL  +      +S+       ++VDH LR  +  E R+VSD+C  L+
Sbjct: 37  ITLGVSGGADSLALLFLVVEWKKRQSWSGA-LDVVTVDHGLRAESAKEARFVSDICRSLQ 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H+++ W+     + L   AREARYALI+EH +  ++  ++  H  DDQ ET   R  R
Sbjct: 96  VRHTILEWRPEGALSNLQGRAREARYALIAEHMEESSSEALVLGHHLDDQAETFLDRLTR 155

Query: 142 DYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                  GLS M        N L I RP L   ++ +   L  R  SW ED SN  + ++
Sbjct: 156 GSGV--YGLSAMASVEHQGPNGLQIVRPLLSLSKDQLVLSLEARGQSWVEDQSNEVEAYK 213

Query: 201 RVRVRRFVRDIDLH-----ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           RVR+R+ ++ +         L    K+ +  R  +   V+      +T H    +AI  D
Sbjct: 214 RVRLRKLLKGLSDEGLSRDGLAETAKRMRRAREALEEWVSSFWSTRVTQHPAGPLAICFD 273

Query: 256 IL-NIDSTLLFYLLRVSAAICGGQ---ISLPGYRSME---RVMLFLKSGKRGCVSIGRVV 308
              N+   +   +L  + +   G      L    ++E   +    LK    GC+ + + V
Sbjct: 274 AWQNLPLEMRLRVLSQALSATAGMEYPSRLSKLEALEADLQKQAQLKKTMSGCI-VSKTV 332

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETT----VWDGRYQFQNLSDSLIQIG 355
              R   +W       +P++ L          +WDGR++   L D   ++G
Sbjct: 333 ---RHLLVWKEVGRSEIPSVGLAKFMNGCRRRIWDGRFEI-TLEDQFGELG 379


>gi|254564206|ref|YP_003071301.1| tRNA(Ile)-lysidine synthase [Methylobacterium extorquens DM4]
 gi|254271484|emb|CAX27499.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase,
           tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein
           [Methylobacterium extorquens DM4]
          Length = 342

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 12/187 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+     PA  L+AVSGG DS  L+ A          G+ +F   +VDH LR  + DE  
Sbjct: 19  FLEEPARPA--LLAVSGGPDSTALMHAAARA------GRDRFRVATVDHALRPGSADEAL 70

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            V  + + L + H++++W   +  + + A+AR ARY L+++HA  I   LI+TAHT DDQ
Sbjct: 71  GVGRLAAELGLVHTILTWDAPRHGSRIQASARGARYKLLTDHAGRIGTGLILTAHTLDDQ 130

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ETV MR     A  G  GL+GM D       + + RPFL   + D+ ++     + +  
Sbjct: 131 AETVLMRL---IAGSGPSGLAGMRDERPLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLR 187

Query: 191 DPSNTDD 197
           DPSNTD+
Sbjct: 188 DPSNTDE 194


>gi|298292991|ref|YP_003694930.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
 gi|296929502|gb|ADH90311.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
          Length = 342

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 98/193 (50%), Gaps = 12/193 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A IL+AVSGG DS  L++        R  G  + +  +VDH LR  A+ E   V  + +R
Sbjct: 30  ARILLAVSGGPDSTALMLLAQRWREGRDAGP-ELAVATVDHGLRAEARTEAEAVGALAAR 88

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L + H+++   +  P+  L  AAR ARY  +  HA+ I A+ I TAHT DDQ ETV  R 
Sbjct: 89  LSLPHAILDLSSPLPKARLQEAARHARYEALLAHARAIGASAIATAHTLDDQAETVLFRL 148

Query: 140 QRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R     G G+ G+     +  L ++ L   RP L   +  +     +  I + EDPSN 
Sbjct: 149 MR-----GSGIGGLAGIPSERALAEVELL--RPLLGLPKAHLIEECRRAGIGFAEDPSNR 201

Query: 196 DDRFERVRVRRFV 208
           D RF R R+R  +
Sbjct: 202 DPRFARARLRALL 214


>gi|240141698|ref|YP_002966178.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase,
           tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein
           [Methylobacterium extorquens AM1]
 gi|240011675|gb|ACS42901.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase,
           tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein
           [Methylobacterium extorquens AM1]
          Length = 342

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 10/176 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DS  L+ A          G+ +F   +VDH LR  + DE   V  + + L +
Sbjct: 28  LLAVSGGPDSTALMHAAARA------GRDRFRVATVDHALRPGSADEALGVGRLATELGL 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H++++W   +  + + A+AR ARY L+++HA  I A LI+TAHT DDQ ETV MR    
Sbjct: 82  VHTILTWDAPRHGSRIQASARGARYRLLTDHAAGIGAGLILTAHTLDDQAETVLMRL--- 138

Query: 143 YAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
            A  G  GL+GM +  +    + + RPFL   + D+ ++     + +  DPSNTD+
Sbjct: 139 IAGSGPSGLAGMREERVLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLRDPSNTDE 194


>gi|83950085|ref|ZP_00958818.1| PP-loop family protein [Roseovarius nubinhibens ISM]
 gi|83837984|gb|EAP77280.1| PP-loop family protein [Roseovarius nubinhibens ISM]
          Length = 396

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 43/344 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGGSDS  LL+ L      R   ++   A++VDH LR  A  E   V+ +C+ L 
Sbjct: 1   MAVAVSGGSDSTALLLGLKDWAQGR---EVSLYAVTVDHGLRAAAAHEAEAVAQLCAELA 57

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H  + W+    Q  L  AAR ARY L+++ A + +   ++  HT +DQ ET+ MR  R
Sbjct: 58  LPHHCLEWQGWDGQGNLSDAARRARYDLMADWALSHDIHDLVLGHTQNDQAETLVMRLAR 117

Query: 142 DYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G GL G+           + + RP L   RE +R++L +R+I W +DPSN D ++
Sbjct: 118 -----GAGLDGLAGMGARTARGAMTLHRPLLGVSRESLRAYLRRRDIGWADDPSNEDPQY 172

Query: 200 ERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---- 250
            RVR R  +       +++ AL       ++ R  + +       + +      ++    
Sbjct: 173 ARVRTRAALSALESAGVEVEALAKVAGYLREARATIGHVAQEAAERLVQFDAGDLVIDAQ 232

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY----RSMERVMLFLKSGK----RGCV 302
           A  ++  +I   +L   LR         +S  GY     ++E ++  L+  +     GC 
Sbjct: 233 AWGEERRDIQRRILQAALR--------WVSGHGYPARGAAVEALLEALQREEAMTLHGCR 284

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346
           +I       R +++ ITR    +  L   P   T+WDGR+Q   
Sbjct: 285 NI------PRRDYIRITREWAAVADLEACP--GTLWDGRWQVSG 320


>gi|114570963|ref|YP_757643.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10]
 gi|114341425|gb|ABI66705.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10]
          Length = 450

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 115/212 (54%), Gaps = 14/212 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISV 58
           M    +++VR  +  L     + +A SGG DS+ LL+    + SD  R+ G+     ++V
Sbjct: 1   MVARAVQTVRSALGRLAGEGPLGIACSGGGDSLALLV----IASDWARANGR-SLQVLTV 55

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH LR+++ DE  +V+ +  RL    + ++W +++P  GL A AR+AR+ L++   + + 
Sbjct: 56  DHGLRKSSADEANHVAAMADRLGWPCTCLTWDDARPGAGLQARARDARHRLLARACRDLG 115

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILY----DLNLWISRPFLRCR 173
            T +  AHT DDQ ETV++R     + +    +S    + ++    DL+L   RP L   
Sbjct: 116 LTELALAHTRDDQSETVWLRLAAGGSWRSAAVMSDRAPSPVWPEGRDLDL--LRPCLDVT 173

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           R ++R  L    I W +DPSN DDR+ RVR R
Sbjct: 174 RAELRRVLSDAGIDWVDDPSNEDDRYARVRAR 205


>gi|114771183|ref|ZP_01448603.1| PP-loop family protein [alpha proteobacterium HTCC2255]
 gi|114548108|gb|EAU50995.1| PP-loop family protein [alpha proteobacterium HTCC2255]
          Length = 423

 Score =  112 bits (279), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 6/186 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +I ++VSGG DS+ LL  L    + ++  KI F A +VDH LR+ + +E + V D+C  L
Sbjct: 28  NIGLSVSGGGDSIALLY-LTKEWACKNDKKI-FVA-TVDHGLRKESLNEAQTVKDICRSL 84

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I  ++++W +      L  AAR AR  LI   A ++    + T HT DDQ ET  +R  
Sbjct: 85  GIECTILNWTDWDKSGNLQDAARSARNRLIGNWANSLGLDAVATGHTADDQAETFLLRLA 144

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLSGM  +IL +  LW  RP L   R ++R +L    I+W +DPSN + +F+
Sbjct: 145 RGSGVD--GLSGMASSILKEGMLWF-RPLLEFHRSELRDYLNINKITWFDDPSNENMKFD 201

Query: 201 RVRVRR 206
           RV++R+
Sbjct: 202 RVKMRK 207


>gi|260753788|ref|YP_003226681.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553151|gb|ACV76097.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 329

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 18/192 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGGSDS+ LL  L   +SD         A++VDH +R  A +E R+V+ +C ++ + 
Sbjct: 34  IAVSGGSDSLALL--LLGAVSD-----FPVEAVTVDHGMRPEAAEEARFVAQICQQIGVP 86

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H +++ K      G+ AAAR  RYAL++E AK  N   +MTAH  DDQ ET  MR+ R  
Sbjct: 87  HQILTTKIEANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADDQAETFLMRAAR-- 144

Query: 144 AEKGMGLSGMC----DTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              G GL+G+     D ++      L + RP L   R  +   + +   ++  DPSN + 
Sbjct: 145 ---GSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVKKAGFTFVSDPSNDNP 201

Query: 198 RFERVRVRRFVR 209
            ++R   RR ++
Sbjct: 202 HYDRTHFRRLLK 213


>gi|83943921|ref|ZP_00956378.1| Probable cell cycle protein [Sulfitobacter sp. EE-36]
 gi|83845168|gb|EAP83048.1| Probable cell cycle protein [Sulfitobacter sp. EE-36]
          Length = 419

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 147/337 (43%), Gaps = 15/337 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGG DS+ LL  L+     R    I   A +VDH LR  A  E   V+  C 
Sbjct: 18  PPVLGVAVSGGGDSVALLHLLNDYARSRG---IALRAATVDHGLRPEAAREAAMVAAQCR 74

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L + H  + W        L   AR+ARY L+++ A+      +   HT DD  ET  MR
Sbjct: 75  ALGVPHDTLRWTGWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHTADDLAETFVMR 134

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GLS M   I     +   RP L  RR D+R+ L +  ++W +DPSN DD 
Sbjct: 135 LGRRAGVD--GLSAM-PAIFDRHGMRWHRPLLNVRRADLRAHLTRCGVTWVDDPSNEDDS 191

Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           F RVR+R+ +       +D  AL    +   D R  ++  +      +  V   ++    
Sbjct: 192 FARVRIRKALAVLTDLGVDSAALADVSRHLADARTALDAQMFAAARAHAHVQYGAVAMDW 251

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           Q +  + +     LL  + A   G    P   ++  V+  L     G  ++    +  + 
Sbjct: 252 QALCGLPTETRRRLLTHTIAWINGATYAPRSSAVAEVLTALDDA--GAATVQGCELRLKR 309

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350
           + LWI R ++ +   +  P +  +WDGR++ +   D+
Sbjct: 310 DKLWIYRELQAV-RAVAAPAD-ALWDGRWRLEPCGDA 344


>gi|56552554|ref|YP_163393.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241762204|ref|ZP_04760286.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|61217187|sp|Q5NLX8|TILS_ZYMMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56544128|gb|AAV90282.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241373251|gb|EER62870.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 329

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 103/192 (53%), Gaps = 18/192 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGGSDS+ LL  L   +SD         A++VDH +R  A +E R+V+ +C ++ + 
Sbjct: 34  IAVSGGSDSLALL--LLGAVSD-----FPVEAVTVDHGMRPEAAEEARFVAQICQQIGVP 86

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H +++ K      G+ AAAR  RYAL++E AK  N   +MTAH  DDQ ET  MR+ R  
Sbjct: 87  HQILTTKIEANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADDQAETFLMRAAR-- 144

Query: 144 AEKGMGLSGMC----DTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              G GL+G+     D ++      L + RP L   R  +   + +   ++  DPSN + 
Sbjct: 145 ---GSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVEKAGFTFVSDPSNDNP 201

Query: 198 RFERVRVRRFVR 209
            ++R   RR ++
Sbjct: 202 HYDRTHFRRLLK 213


>gi|58617611|ref|YP_196810.1| hypothetical protein ERGA_CDS_08840 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417223|emb|CAI28336.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 442

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 171/384 (44%), Gaps = 30/384 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DSM LL      LS     K   + ++V+H LR  A  E  +V      L + 
Sbjct: 28  IAVSGGIDSMVLL-----HLSAICNTKFTPTILTVNHGLRSEAAQEALFVYQHSQNLNLK 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +++W   KPQ+ + ++AR+ RY+L+ +         +M AH  +DQ ET+ MR     
Sbjct: 83  CHILNWHGEKPQSNIQSSARQIRYSLLLQWCNQNQVNYLMVAHQKNDQAETIMMR----- 137

Query: 144 AEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            E+G GL G+       Y   + I RP L   RE++  +   +NI+W  D SN + +++R
Sbjct: 138 LERGSGLDGLAGMQECTYLNGICILRPLLAISREELIHYADTKNITWVHDISNDNKKYKR 197

Query: 202 VRVRRFVRDID--------LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
              R  ++++D        L+   + +K+  D    + + V + I ++L  +    I I 
Sbjct: 198 TLYRNILKEVDNTEELVNRLYKTSVHIKRSLDC---ILHYVRLAIDEHLEFNNLGFIKIK 254

Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG---KRGCVSIGRVVI 309
                N+   +   L   S    G +   P Y  +  +   +++    K       ++  
Sbjct: 255 LNTFFNLPEEISLRLFTYSIMSIGQKKYKPRYHKLNNMFRKIQNNDFTKPQTFCHCKITR 314

Query: 310 DRRANFLWITRAVR--NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG 367
           +++ N L ITR V   N  T+  Y + + VWD R++ +  + +   I   S     +P  
Sbjct: 315 NQKDNTLCITREVSVINNKTISPYSKTSIVWDNRFKIRISNPNTHSITVSSLNNNYIPEN 374

Query: 368 IPPIIAQRALSSMPSKEGGKPLLA 391
           +   + + A+  +P  +    +LA
Sbjct: 375 LKK-LDREAVRCLPILKYQNKILA 397


>gi|154247011|ref|YP_001417969.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2]
 gi|154161096|gb|ABS68312.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2]
          Length = 368

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/204 (37%), Positives = 103/204 (50%), Gaps = 6/204 (2%)

Query: 4   SPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           SPIE          +  H  IL+AVSGG DS  LL       + R+ G     A +VDH 
Sbjct: 12  SPIEDGALDALFAPFTPHPRILIAVSGGPDSTALLYLAARWRAGRASGP-DLIAATVDHG 70

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  A  E   V    + L + H ++ W+ +KP  G+  AAREARY L+++ A+   AT 
Sbjct: 71  LRAEAAAEAEAVGAFATFLGVPHRILIWQGAKPTHGIQEAAREARYDLLADAAREAGATA 130

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AHT DDQ ETV  R  R       GLSGM      D  L + RP L   +  + + L
Sbjct: 131 IALAHTRDDQAETVLFRLARGSGLS--GLSGMRGDAARD-GLALLRPLLDVPKARLVATL 187

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              ++++  DPSN+D RF R R+R
Sbjct: 188 EAASVAFVRDPSNSDPRFARPRLR 211


>gi|316932669|ref|YP_004107651.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1]
 gi|315600383|gb|ADU42918.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1]
          Length = 341

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 108/206 (52%), Gaps = 5/206 (2%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+   F      PA I++AVSGG DS+ L+  +         G    S ++VDH L
Sbjct: 9   VSATEARGLFGDWKAAPA-IVLAVSGGPDSLALMWLVARWRKALKRGP-SLSVVTVDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V  + + L + H  + W+  KP +G+ AAAR+ARY L++E A+   AT I
Sbjct: 67  RAEAAREARAVKRLATSLDLPHRTLRWRGDKPASGIQAAARQARYRLLAEAARRAGATHI 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MTAHT DDQ ETV MR  R       GL+ M      D ++ + RP L   +  + + L 
Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGIA--GLAAMSRQTARD-DIVLVRPLLDVPKARLLATLA 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208
           +  I +  DPSN D RF R R+R  +
Sbjct: 184 KARIDFATDPSNADPRFARPRLRELM 209


>gi|57239569|ref|YP_180705.1| hypothetical protein Erum8420 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579557|ref|YP_197769.1| hypothetical protein ERWE_CDS_08930 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161648|emb|CAH58577.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418183|emb|CAI27387.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 442

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 171/384 (44%), Gaps = 30/384 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DSM LL      LS     K   + ++V+H LR  A  E  +V      L + 
Sbjct: 28  IAVSGGIDSMVLL-----HLSAICNTKFTPTILTVNHGLRSEAAQEALFVYQHSQNLNLK 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +++W   KPQ+ + ++AR+ RY+L+ +         +M AH  +DQ ET+ MR     
Sbjct: 83  CHILNWHGEKPQSNIQSSARQIRYSLLLQWCNQNQINYLMVAHQKNDQAETIMMR----- 137

Query: 144 AEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            E+G GL G+       Y   + I RP L   RE++  +   +NI+W  D SN + +++R
Sbjct: 138 LERGSGLDGLAGMQECTYLNGICILRPLLAISREELIHYADTKNITWVHDISNDNKKYKR 197

Query: 202 VRVRRFVRDID--------LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
              R  ++++D        L+   + +K+  D    + + V + I ++L  +    I I 
Sbjct: 198 TLYRNILKEVDNTEELVNRLYKTSVHIKRSLDC---ILHYVRLAIDEHLEFNNLGFIKIK 254

Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG---KRGCVSIGRVVI 309
                N+   +   L   S    G +   P Y  +  +   +++    K       ++  
Sbjct: 255 LNTFFNLPEEISLRLFTYSIMSIGQKKYKPRYHKLNNMFRKIQNNDFTKPQTFCHCKITR 314

Query: 310 DRRANFLWITRAVR--NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG 367
           +++ N L ITR V   N  T+  Y + + VWD R++ +  + +   I   S     +P  
Sbjct: 315 NQKDNTLCITREVSVINNKTISPYSKTSIVWDNRFKIRISNPNTHSITVSSLNNNYIPEN 374

Query: 368 IPPIIAQRALSSMPSKEGGKPLLA 391
           +   + + A+  +P  +    +LA
Sbjct: 375 LKK-LDREAVRCLPILKYQNKILA 397


>gi|90426215|ref|YP_534585.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisB18]
 gi|90108229|gb|ABD90266.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisB18]
          Length = 346

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 16/193 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISVDHCLRETAKDEVRYVSDVC 77
           +++AVSGG DS+ L+      L+ R    ++     S I+VDH LR  A  E R V    
Sbjct: 27  VVLAVSGGPDSLALMW-----LAARWRKALRRGPAISVITVDHGLRPEAAREARDVKRHA 81

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L + H  + W+  KP TG+ AAAREARY L++  A+   A+ +MTAHT DDQ ET+ M
Sbjct: 82  AELDLPHRTLRWRGDKPSTGVPAAAREARYQLLARAARAAGASHVMTAHTRDDQAETLLM 141

Query: 138 RSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           R  R     G G++G+           + I+RP L   +  + + L +  I +  DPSNT
Sbjct: 142 RMSR-----GSGIAGLAAMARQTERFGVIIARPLLEVSKAQLVATLDKAKIGFATDPSNT 196

Query: 196 DDRFERVRVRRFV 208
           D R+ R R+R  +
Sbjct: 197 DPRYARPRLRGLI 209


>gi|84516649|ref|ZP_01004008.1| PP-loop family protein [Loktanella vestfoldensis SKA53]
 gi|84509685|gb|EAQ06143.1| PP-loop family protein [Loktanella vestfoldensis SKA53]
          Length = 392

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 97/195 (49%), Gaps = 10/195 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F + L     + +AVSGG DS+ LL  L + +  R       S  SVDH LR  +  E  
Sbjct: 6   FAQLLQGGTPVGLAVSGGGDSIALL-HLAAAIGGR------ISVASVDHGLRPESAAECG 58

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            V+D+C+   + H  + W     +  L   AR ARY L+++ A+      I   HT DDQ
Sbjct: 59  MVADICTSYGLPHQTLKWTGWDRRGNLQDQARRARYGLLADWARAAGVANIALGHTADDQ 118

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ M   R       GL+GM   +  D  L   RP L+  R  +R++L+     WC+D
Sbjct: 119 AETIVMALARGAGVG--GLAGMAAVMSRD-GLHYHRPLLQVTRVALRAYLVATGRVWCDD 175

Query: 192 PSNTDDRFERVRVRR 206
           PSN D  +ER+R+R+
Sbjct: 176 PSNDDPAYERIRIRQ 190


>gi|218533183|ref|YP_002423999.1| tRNA(Ile)-lysidine synthetase [Methylobacterium chloromethanicum
           CM4]
 gi|218525486|gb|ACK86071.1| tRNA(Ile)-lysidine synthetase [Methylobacterium chloromethanicum
           CM4]
          Length = 347

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 12/187 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+     PA  L+AVSGG DS  L+ A          G+      +VDH LR  + DE  
Sbjct: 19  FLEEPARPA--LLAVSGGPDSTALMHAAARA------GRDLLHVATVDHALRPGSADEAL 70

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            V  + + L + H++++W   +  + + A+AR ARY L+++HA  I A LI+TAHT DDQ
Sbjct: 71  GVGRLAAELGLVHTILTWDAPRHGSRIQASARGARYKLLTDHAARIGAGLILTAHTLDDQ 130

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ETV MR     A  G  GL+GM D       + + RPFL   + D+ ++     + +  
Sbjct: 131 AETVLMRL---IAGSGPSGLAGMRDERPLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLR 187

Query: 191 DPSNTDD 197
           DPSNTD+
Sbjct: 188 DPSNTDE 194


>gi|67458532|ref|YP_246156.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2]
 gi|75537001|sp|Q4UN67|TILS_RICFE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|67004065|gb|AAY60991.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2]
          Length = 430

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 163/339 (48%), Gaps = 31/339 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I  AVSGGSDS+ LL  L ++ ++++   I+ S ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKIAAAVSGGSDSVALL-YLANIWAEKN--NIELSVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRR-------FVR-DIDLHALYLKMKKFQDLRVK------VNNAVAMLIPKYLTVH 245
            R  +R+       +++ DI L    LK+    D + K      +  AV +    +  + 
Sbjct: 193 RRNIIRQKLAKGEDYIKADIILQQ--LKINDLLDNKFKPELISAIAEAVKIFEYGFAFLD 250

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
           +      S +   +   ++ +LL     I  GQ     + S+E ++  +        ++ 
Sbjct: 251 LVKFDKFSNE---VKVQIINFLL----IIISGQFRAARFYSVEPILKLITQDVNFKNTLH 303

Query: 306 RVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQ 343
             VI+R  N L I R   + LP   +  +++ +WD R++
Sbjct: 304 GCVINRIQNELLIYREFGKKLPESKILLDKSVIWDNRFR 342


>gi|118588322|ref|ZP_01545731.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Stappia aggregata IAM 12614]
 gi|118439028|gb|EAV45660.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Stappia aggregata IAM 12614]
          Length = 461

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 162/374 (43%), Gaps = 32/374 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +++ +AVSGGSDS+ LL+ L      R+  +     + VDH LR  +  E  +V+     
Sbjct: 34  SNLALAVSGGSDSLCLLV-LFDEWRKRTGWQGAAEVLCVDHQLRPESGQEAEFVAMNARA 92

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +  +V+ W   KP   +   AR ARY L++   +   A  ++  H  DDQ ET   R 
Sbjct: 93  CGLDCTVLRWSGDKPSANVQEEARLARYRLMAGRMRDTEAEALVLGHHLDDQAETFLDRL 152

Query: 140 QRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            R       GLSGM  D       L + RP L   + D+ + L QR   WC DPSN + +
Sbjct: 153 TRGSGVS--GLSGMAADEGCGPEGLRLLRPLLSVSKSDLIAALEQRGRPWCTDPSNRNPK 210

Query: 199 FERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           ++R R+R  +       +    L       +  R  +   V  L  + +T H    + + 
Sbjct: 211 YKRSRLRVILSLLAEEGLSAERLAQTAANIRRAREALELTVEDLAARLVTEHPAGPVRLD 270

Query: 254 QDILNIDST-----LLFYLL-RVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
           +      +      LL YLL RVS     G++S P    ++ +   L SG +   +    
Sbjct: 271 RYAYRTLAEEFRLRLLVYLLARVS-----GKVSRPRLAKLQALDRVLISGVQNRQTFQGS 325

Query: 308 VIDRRANFLWITR-AVRNLPTLILYPEETTVWDGRYQFQ------NLSDSLIQIG----- 355
           V D  A+ + + + A R  PT++     T  WDGRY ++         D+ + +G     
Sbjct: 326 VFDADADTIRVWKEAGRTPPTVVTGLAGTGTWDGRYLYRAPERVTGEGDAPLCLGPLTSA 385

Query: 356 PQSYRKADVPSGIP 369
           P S R+ D P G P
Sbjct: 386 PVSRREIDWPEGWP 399


>gi|89053469|ref|YP_508920.1| tRNA(Ile)-lysidine synthetase-like [Jannaschia sp. CCS1]
 gi|88863018|gb|ABD53895.1| tRNA(Ile)-lysidine synthetase-like protein [Jannaschia sp. CCS1]
          Length = 422

 Score =  109 bits (273), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 168/371 (45%), Gaps = 33/371 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +P+ I +AVSGG DSM +L   H     R +G +    ++VDH LR  ++ E   V+  C
Sbjct: 21  FPSDIALAVSGGGDSMAMLTLAHGWA--RVYG-VGLHVVTVDHGLRSASRQEAEMVAKEC 77

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L   H+ + W+    Q  L  AAR AR +LI      I   L   AHT DDQ ET+ M
Sbjct: 78  AVLGHPHTTLKWQWDN-QGNLQDAARRARLSLIGAWRGQIAHVLF--AHTRDDQAETMLM 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R  R     G  LS M +T   D++ W + RP L   R D+R +     + + +DPSN D
Sbjct: 135 RLLRGSGVDG--LSAMAET--RDMDGWQVIRPLLSETRADLRHYADVLRVPYVDDPSNED 190

Query: 197 DRFERVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           + F+RVR+R  ++   +D  AL     +    R  +  A A+ + +      R     + 
Sbjct: 191 ETFDRVRLRGTIKALGMDTRALANTAARMGRARTAL-EARAVDVARACVTEDRWEWMPTG 249

Query: 255 DILNIDSTLLFYL-----LRVSAAICGGQISLPGYR----SMERVMLFLKSGKRGCVSIG 305
           D+L ID      +     LRV A      ++   YR     +E ++    SG  G +   
Sbjct: 250 DLL-IDRDRFAEVEPDTQLRVLAGAL-QWVTTADYRPRAAPLEDLLDRALSGGGGTLHGA 307

Query: 306 RVVIDRRANFLWITRAVRNLP-TLILYPEETTVWDGRYQ-FQNLSDS---LIQIGPQSYR 360
           R  I  R   + ++R    +  T +    E  +WD R+Q F     S   +  +GP  ++
Sbjct: 308 RTTI--RGAHIRVSREFDAIEGTEVALGSEAVIWDTRWQVFSTDVPSGRRVRALGPDGWQ 365

Query: 361 KA-DVPSGIPP 370
           +A D P   PP
Sbjct: 366 QATDKPDHPPP 376


>gi|92118967|ref|YP_578696.1| tRNA(Ile)-lysidine synthetase-like [Nitrobacter hamburgensis X14]
 gi|91801861|gb|ABE64236.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter
           hamburgensis X14]
          Length = 345

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 99/187 (52%), Gaps = 5/187 (2%)

Query: 20  AHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           AH LV  VSGG DS  L+          + G     A++VDH LR  +  E R V  + +
Sbjct: 24  AHALVLGVSGGPDSTALMWLAARWRRAMTRGP-DLIAVTVDHGLRPGSAREARDVKHLAT 82

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L + H  V W  +KP++GL AAAR+ARY L+++ A+   A  + TAHT DDQ ETV MR
Sbjct: 83  SLGMRHRTVRWSGAKPKSGLPAAARDARYRLLAKTARANGALHVFTAHTRDDQAETVLMR 142

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GLS M    + D    ++RP L   +  + + L +  I++ EDP+N D  
Sbjct: 143 ISRGSGI--TGLSAMARETMRD-GFILARPLLHVSKSRLIATLEKAGIAYAEDPTNRDVS 199

Query: 199 FERVRVR 205
           F R R+R
Sbjct: 200 FTRPRLR 206


>gi|73667491|ref|YP_303507.1| cell cycle protein MesJ [Ehrlichia canis str. Jake]
 gi|72394632|gb|AAZ68909.1| cell cycle protein MesJ [Ehrlichia canis str. Jake]
          Length = 433

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 22/333 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VAVSGG DSM LL   H     R+        ++V+H LR+ AK E  +V      L + 
Sbjct: 21  VAVSGGIDSMVLL---HLSAQHRNHNTPII--LTVNHGLRQEAKQEALFVFQHSQNLNLK 75

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +++W    P++ + ++AR+ RY L+ +         +M AH  +DQ ET+ +R     
Sbjct: 76  CHILNWHGKLPESNIQSSARQIRYGLLLQWCNENRINYLMVAHQKNDQAETIMIR----- 130

Query: 144 AEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            E+G GL G+       Y   + I RP L   R ++  +  Q NI W  DPSN + +++R
Sbjct: 131 LERGSGLDGLAGMQECTYLNGICILRPLLSVSRTELLQYASQNNIPWINDPSNNNKKYKR 190

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              R  +   D     ++ LY      +     + + V   I + L       I I  D+
Sbjct: 191 TLYRNMLETTDNPEILINRLYTASTHIKRSLDCILHYVREAIDECLEFTNLGYINIKLDV 250

Query: 257 -LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRA 313
            LN+   +   LL  S    G Q   P Y+ + ++   +++ +           ++  + 
Sbjct: 251 FLNLPEEISLRLLTYSIMTIGQQKYKPRYKKINKIFYKIQNNELNSAQTLCSCKIVKNQN 310

Query: 314 NFLWITRAVRNLPTLIL-YPEETT-VWDGRYQF 344
           N + I R V  +  LI+ YP  T+ +WD R++ 
Sbjct: 311 NTISIIREVSTIKELIVNYPTNTSIIWDNRFKI 343


>gi|146338275|ref|YP_001203323.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS278]
 gi|146191081|emb|CAL75086.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS278]
          Length = 367

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 101/194 (52%), Gaps = 10/194 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           SL     +++AVSGG DSM LL         L+D      +  AI+VDH LR  A+ E  
Sbjct: 29  SLADAPALVLAVSGGPDSMALLWLAARWRQALAD----GPRLVAITVDHGLRPEARREAA 84

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            V     +L ++H ++ W   KP TG+  AAR ARY L++  A+   A+ ++TAHT DDQ
Sbjct: 85  MVKRFARQLEVSHRMLRWTEPKPTTGIPEAARLARYRLLARAARQAGASHVLTAHTRDDQ 144

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV MR  R      +GL+ M      D  L ++RP L   +  + + L    I + +D
Sbjct: 145 AETVLMRLLRGSGI--VGLAAMAPVSARD-GLLLARPLLEISKARLVATLRSAGIEFADD 201

Query: 192 PSNTDDRFERVRVR 205
           P+N D  + R R+R
Sbjct: 202 PTNHDPAYTRPRLR 215


>gi|299134181|ref|ZP_07027374.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2]
 gi|298590928|gb|EFI51130.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2]
          Length = 347

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 112/209 (53%), Gaps = 17/209 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISV 58
           +S  E+   F      PA +L AVSGG DS+ LL      L+ R    +K      A++V
Sbjct: 11  ISAQEARHLFAGWKRIPALVL-AVSGGPDSVALLW-----LAARWRKSLKNGPDLLAVTV 64

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH LR  A  E R V  + S L I H ++SW+  KP+TG+  AAR+ARY L++  A++ +
Sbjct: 65  DHGLRAAAAHEARNVKRLASSLGITHRILSWRGPKPKTGVPRAARDARYELLARAARSAS 124

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRRED 176
           A  I+TAHT DDQ ETV MR  R     G G++G+    +      +   RPFL   +  
Sbjct: 125 AVAIVTAHTQDDQAETVLMRLSR-----GSGITGLAGMAMQTERHGVGLLRPFLEIPKAR 179

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           + + L +  + + +DP+N D  + R R+R
Sbjct: 180 LVATLDRAKVVYADDPTNHDPAYTRSRLR 208


>gi|27382258|ref|NP_773787.1| hypothetical protein bll7147 [Bradyrhizobium japonicum USDA 110]
 gi|61216753|sp|Q9XBG6|TILS_BRAJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|5531226|emb|CAB51028.1| YaeN protein [Bradyrhizobium japonicum]
 gi|27355429|dbj|BAC52412.1| yaeN [Bradyrhizobium japonicum USDA 110]
          Length = 361

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 10/206 (4%)

Query: 4   SPI---ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVD 59
           SPI   E+ + F      PA +L AVSGG DS+ L+    +    RS  +  + + ++VD
Sbjct: 7   SPISAREAKQLFAELKSAPALVL-AVSGGPDSIALM--WLAARWQRSLARGPRLTVVTVD 63

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H LR  A  E R V  + + L + H  + W+ +KP+TGL AAAREARY L+ + A++  A
Sbjct: 64  HGLRAEAAREAREVKRLATELGLPHRTLRWRGAKPKTGLPAAAREARYRLLMQAARSAGA 123

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           + ++TAHT DDQ ET+ MR  R       GLS M      D  + ++RP L   +  + +
Sbjct: 124 SHVLTAHTRDDQAETLLMRLVRGSGL--AGLSAMARLTERD-GIVLARPLLDVPKAQLIA 180

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
            L +  I + +DP+N D  F R R+R
Sbjct: 181 TLKRAKIGFADDPTNRDTAFTRPRLR 206


>gi|56697938|ref|YP_168309.1| PP-loop family protein [Ruegeria pomeroyi DSS-3]
 gi|61216401|sp|Q5LNU7|TILS_SILPO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56679675|gb|AAV96341.1| PP-loop family protein [Ruegeria pomeroyi DSS-3]
          Length = 419

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 98/190 (51%), Gaps = 10/190 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P  + VAVSGG DS    +AL  +L+ R F  G++K    +VDH LR  +  E   V+  
Sbjct: 23  PRRLGVAVSGGGDS----VALMHLLA-RCFPRGEVKLCVATVDHGLRSESASEAALVARQ 77

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            + L + H  + W     +  L   AR ARY L+++ A     T +  AHT DDQ ET+ 
Sbjct: 78  AAGLGLPHETLLWTGWTGEGNLQDQARRARYGLLTDWALRNRVTTVALAHTADDQAETLL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R       GL+ M    + D  + + RP L   R+ +R FL    I+W EDPSN D
Sbjct: 138 MRLGRSAGVS--GLAAMAPRRMQD-GVVLVRPLLGITRDALRDFLRAEGIAWAEDPSNED 194

Query: 197 DRFERVRVRR 206
            R++R++ R+
Sbjct: 195 IRYDRIKARQ 204


>gi|332187375|ref|ZP_08389113.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17]
 gi|332012536|gb|EGI54603.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17]
          Length = 330

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 105/192 (54%), Gaps = 13/192 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA +L+AVSGG DSM +L+   +    R       +  +VDH LR  A +E+R V++ C 
Sbjct: 28  PAPLLLAVSGGPDSMAMLMLAAAAFPGR------IAVATVDHGLRPEAAEELRMVAEHCR 81

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L + H  +          L A AREARYAL+++ A+ I A  I+TAH  DDQ ET  MR
Sbjct: 82  ILGVPHHGLRPATPIEGASLQAQAREARYALLADQARAIGAAAILTAHHADDQAETFLMR 141

Query: 139 SQRDYAEKGMGLSGMCDT-ILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           + R     G GLSG+    +  ++N + + RP L  RR ++R  + +    + +DP+N D
Sbjct: 142 AAR-----GAGLSGLSGVRVRTEINGVPVLRPLLDWRRAELRQIVRRAEAPFVDDPANHD 196

Query: 197 DRFERVRVRRFV 208
            R +R R R+ +
Sbjct: 197 PRHDRTRFRQLL 208


>gi|157803229|ref|YP_001491778.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
           McKiel]
 gi|157784492|gb|ABV72993.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
           McKiel]
          Length = 432

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 23/333 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VAVSGGSDS+ LL  L +V + ++   I+   ISVDH LRE +K E  Y+ ++ + L 
Sbjct: 24  IAVAVSGGSDSVALL-YLTNVWAKKN--NIELFVISVDHNLREQSKQETHYIQNISNSLN 80

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             H  +S+ +    + L   ARE RY L++     ++   ++TAH  DD +E   +R +R
Sbjct: 81  RKHYNLSFDHQNNFSNLQERAREGRYNLMTNLCLELDILALLTAHHEDDYVENFCLRLER 140

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           +    G+  S     I +  N+ I RP     + ++  +L+  NI W ED SN  D+++R
Sbjct: 141 NSGIFGLSSSN----INWHNNIQIIRPLYNIPKSELVEYLVNHNIKWFEDESNLSDKYKR 196

Query: 202 VRVR-RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ------ 254
             VR +  ++ D    Y+K       ++K+NN +       L   +   + I +      
Sbjct: 197 NLVRQKLAKEED----YIKADIILQ-QLKINNLLDDKFKPELISAIAEAVKIFEYGFAFL 251

Query: 255 DILNID---STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
           D++  D   + +   L+     I  GQ  +  + S+  ++  +        ++   VI R
Sbjct: 252 DLVKFDKFSNEVKVQLINFLLIIISGQSRVARFYSVSPILELITQDINFKNTLHGCVIKR 311

Query: 312 RANFLWITRAV-RNLPTLILYPEETTVWDGRYQ 343
             N L I R   + LP   +  +++ +WD R+ 
Sbjct: 312 IQNELLIYREFGKKLPKSQILLDKSIIWDSRFH 344


>gi|146276617|ref|YP_001166776.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554858|gb|ABP69471.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 412

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/345 (30%), Positives = 159/345 (46%), Gaps = 33/345 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DSM LL              I   A++VDH LR  A  E   V  VC+RL + 
Sbjct: 21  LAVSGGGDSMALLHLAAEA-------GIAARAVTVDHGLRPEAAAEALEVGRVCTRLGVP 73

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H ++ W+    +  LM  AR AR  LISE A+      +   HT DD  ET  MR  R  
Sbjct: 74  HDILRWEGWDGRGNLMDQARRARLRLISEWARGAGLDAVALGHTRDDVAETFLMRLARGA 133

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
                GL+ M      +  LW+ RP L   RE++R  L +R  +W EDPSN +  F+RVR
Sbjct: 134 GVD--GLAAMRAERRAEGMLWL-RPLLGIGREELREELRRRGAAWFEDPSNENRAFDRVR 190

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML------IPKYLTVHMRSIIAISQDIL 257
           VR+ ++   L  L L  ++  ++   +    A L        + L    R  + ++  +L
Sbjct: 191 VRQAMQ--GLAGLGLGPERLAEVAGHLAEVRAALDAQLHEAARTLVRVDRGDVLMAPGVL 248

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR---RAN 314
           ++   +L  LLR +          P   ++ R+M  L+ GK   +   R+V  R   R  
Sbjct: 249 DLPDEILRRLLRGAVQWVASAEYGPRGPALARLMRDLRQGKGRTLHGCRLVWRRDGLRIG 308

Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQ-----NLSDSLIQI 354
             W  +AVR+L   +       +WDGR++ Q     ++SD  ++I
Sbjct: 309 REW--QAVRDLTAPV-----GALWDGRWRLQGPPQEDISDQPLEI 346


>gi|182680532|ref|YP_001834678.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182636415|gb|ACB97189.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 400

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 105/198 (53%), Gaps = 5/198 (2%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +SP   V  F R L +   +L+AVSGG DS+ L++ L +  ++  +     S  SVDH 
Sbjct: 66  LISPATLVDLF-RPLEHARKVLLAVSGGPDSVALML-LAAQWAEAVWKAPPLSVASVDHG 123

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  +  E   V++  +RL + H ++ W+  KP+T L   AR+ARY L+  HA+TI A  
Sbjct: 124 LRPDSLAEAEQVAEWAARLGLPHHILRWEGEKPKTRLQERARDARYGLLIAHAETIGADY 183

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ET+  R  R    +  GL GM +++     L  +RP L   + ++ +  
Sbjct: 184 LVTAHHADDQAETILFRLLRGSGPR--GLKGM-ESLFQRGELLHARPLLGMTKAELLAIC 240

Query: 182 LQRNISWCEDPSNTDDRF 199
                 +  DPSN D RF
Sbjct: 241 DTCRHPFFTDPSNLDVRF 258


>gi|126733590|ref|ZP_01749337.1| Probable cell cycle protein [Roseobacter sp. CCS2]
 gi|126716456|gb|EBA13320.1| Probable cell cycle protein [Roseobacter sp. CCS2]
          Length = 424

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/206 (38%), Positives = 107/206 (51%), Gaps = 19/206 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I ++VSGG DS+ L+      L+ R     +   ++VDH LR  A+ E+  V+   + L 
Sbjct: 29  IGLSVSGGGDSIALMH-----LAARLRDPKRLRVLTVDHGLRPEAQQEIALVASQAADLN 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H+V+ W     Q  L AAAR  R+A +S  A   N   +   HT DDQ+ETV MR  R
Sbjct: 84  IDHAVMPWTWDG-QGNLQAAARARRWAAVSAWAAMHNMREVWLGHTEDDQVETVLMRLAR 142

Query: 142 DYAEKGMGLSGMCDTILYDL----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                G G+ G+  T +Y L    +L I RP L C R D+R +L    I WCEDPSN D 
Sbjct: 143 -----GSGIDGL--TAMYPLSERDDLRILRPLLGCARADLRHWLQSNKIPWCEDPSNDDP 195

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKF 223
           RF+RVR R+      L  L L  K+ 
Sbjct: 196 RFDRVRARQMF--AQLEGLGLTRKRL 219


>gi|126725520|ref|ZP_01741362.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150]
 gi|126704724|gb|EBA03815.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150]
          Length = 419

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 99/188 (52%), Gaps = 6/188 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VAVSGGSDSM LL+  ++   +   G + +  ++VDH LR  A+ E   V D CS L + 
Sbjct: 28  VAVSGGSDSMALLVLANAWAIEN--GHVLY-VVTVDHQLRPDARVEAETVGDFCSTLGLP 84

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H V++W     +      AR ARY L+   AK++    +   HT DDQ ET+ M   R  
Sbjct: 85  HQVLTWNGWVGRGNKAELARNARYDLMQVWAKSLRLNGLFLGHTEDDQAETLLMSIARKS 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
                GLS M     +  +L + RP L   R D+R  L + +ISW +DPSN D   ER++
Sbjct: 145 GVD--GLSAMRARRAHG-DLVLMRPLLGFARGDLRQILTEGDISWADDPSNDDITSERIK 201

Query: 204 VRRFVRDI 211
           +R  + D+
Sbjct: 202 MRHLLTDM 209


>gi|46203193|ref|ZP_00208846.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Magnetospirillum magnetotacticum
           MS-1]
          Length = 343

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 7/178 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  L+AVSGG DS  L+   H  +   +   ++ +  ++DH LR  +  E R V  +   
Sbjct: 25  ATALLAVSGGPDSTALM---HVAVRAGTGAHLRVA--TIDHGLRPGSAGEARAVGHLAGE 79

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + + H++++W++ +  + +   AR+ARY L+++HA ++ A L++TAHT DDQ ETV MR 
Sbjct: 80  MGLTHAILAWESPRSGSRIQETARDARYRLLTDHAASLGADLVLTAHTLDDQAETVLMRL 139

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                    GL+GM         + ++RPFL   + D+ ++     + +  DPSNTD+
Sbjct: 140 M--AGSGPAGLAGMRHERPLAPGIRLARPFLAVPKADLVAYCEAHRLPFVRDPSNTDE 195


>gi|260654697|ref|ZP_05860187.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1]
 gi|260630713|gb|EEX48907.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1]
          Length = 419

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 109/213 (51%), Gaps = 25/213 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHIL-VAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISV 58
           M LS +E  R   R   +    L VAVSGG DSMGLL + L S L          +AI +
Sbjct: 1   MTLSAVEKFRAAARRDGWLGQPLAVAVSGGGDSMGLLWLCLASGLR-------PCAAIHL 53

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTG--LMAAAREARYALISE 112
           DH LR ++ DE R+V + C RL +      WK     S+   G  +  A R  RYA + E
Sbjct: 54  DHGLRPSSADERRFVEETCGRLGLP---FFWKRIDAASRRLQGESVEVACRRERYAFLRE 110

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A++  A+++  AHT DDQ ETV M   R     G GL G+   I     +W+ RP L  
Sbjct: 111 AAQSAGASVVALAHTADDQAETVLMNICR-----GCGLWGLA-GIPRRRGMWV-RPVLDF 163

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           RR+++R  L     +W ED SN+D R+ R RVR
Sbjct: 164 RRDELRDLLKDAGWTWVEDESNSDRRYTRNRVR 196


>gi|149202855|ref|ZP_01879826.1| Probable cell cycle protein [Roseovarius sp. TM1035]
 gi|149143401|gb|EDM31437.1| Probable cell cycle protein [Roseovarius sp. TM1035]
          Length = 418

 Score =  106 bits (265), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 159/368 (43%), Gaps = 37/368 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGGSDS+ LL  LH        G    +A++VDH LR T+  E   V+ +C+
Sbjct: 21  PTRLGVAVSGGSDSLALLHLLHGW---SLVGGPTPAAVTVDHGLRPTSAQEAVDVAQICA 77

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           RL I H  V W+       L   AR ARYAL+++ A+  +   I   HT DD  ET  MR
Sbjct: 78  RLAIPHDTVRWQGWDGSGNLPDHARRARYALLTDWARANDLHDIAIGHTQDDVAETFLMR 137

Query: 139 SQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R     G G+ G+           +   RP L   RE +R  L +   SW +DP+N D
Sbjct: 138 LAR-----GAGVDGLAAMRPRWTQSGVTFHRPLLDLSREALRDHLRRLGQSWIDDPTNDD 192

Query: 197 DRFERVRVRR---FVRDIDLHALYLK--MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
             + R R R+    +  + L A  L    +    +R  +++A        L V    I+ 
Sbjct: 193 TTYLRPRARQSLMALAPMGLGAATLADVARTLSGVRTALDHATLTAARALLQVQSGDILI 252

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVI 309
                 ++   +   L++       G+   P   ++     F+K+ + G      G +++
Sbjct: 253 DHPGFNDLPEEIARRLMQAMLQWLAGEEYPPRGTALAS---FIKAARDGHTMPLHGCLLL 309

Query: 310 DRRANFLWITR---AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI---GPQS----- 358
             +   L +TR   AV+ L   +      T+WD R+Q    +   ++I   GP       
Sbjct: 310 PPKNGQLRLTREYAAVKGLRAPV-----NTLWDNRWQASGPASPGVEIAALGPNGLQACP 364

Query: 359 -YRKADVP 365
            +R++ +P
Sbjct: 365 DWRQSGLP 372


>gi|157825192|ref|YP_001492912.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford]
 gi|166988063|sp|A8GLX9|TILS_RICAH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157799150|gb|ABV74404.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford]
          Length = 430

 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 159/333 (47%), Gaps = 21/333 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I VAVSGGSDS+ LL  L ++ ++++   I+ S ISVDH LRE +K E  YV ++ + 
Sbjct: 20  SKIAVAVSGGSDSVALL-YLANIWAEKN--NIELSVISVDHNLREQSKQETYYVQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   AR  RY L++      +  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERARAGRYDLMTNLCLEFDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254
            R  +R   + +   A Y+K +     ++K+N+ +       L   +   + I +     
Sbjct: 193 RRNIIR---QKLAKGAGYIKAEIILQ-QLKINDLLDNKFKPELISAIAEAVKIFEYGFAF 248

Query: 255 -DILNID---STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
            D++  D   + +   ++     I  GQ     + S+E ++  +        ++   V+ 
Sbjct: 249 LDLVKFDKFSNEVKVQIINFLLIIISGQFRAARFYSVEPILKLITQDVNFKNTLHGCVVK 308

Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRY 342
           R  N L I R   + LP   +  +++ +WD R+
Sbjct: 309 RIQNELLIYREFGKKLPESKILLDKSIIWDNRF 341


>gi|328542547|ref|YP_004302656.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           [polymorphum gilvum SL003B-26A1]
 gi|326412293|gb|ADZ69356.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Polymorphum gilvum SL003B-26A1]
          Length = 442

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 150/335 (44%), Gaps = 22/335 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG+DS+ LL  L +    R+    +    +VDH LR  A+ E  +V  +C+   
Sbjct: 31  LAIAVSGGADSLALL-HLFADWQRRTARAPQAHVFTVDHGLRAEARAEAEHVHRLCAGYC 89

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H +++W   K    L A AREARY LI    + ++ + +  AH  DDQ ET   R  R
Sbjct: 90  LPHEILTWAGRKGAPNLQATAREARYTLIGARMRALSLSALAVAHHRDDQAETFLDRLTR 149

Query: 142 DYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                G G+ G+     D     + + I RP L   +  + + L    +SW EDPSNTD 
Sbjct: 150 -----GSGVYGLAAMAADEADGPVGVRILRPLLDVPKARLIATLEAAGLSWFEDPSNTDL 204

Query: 198 RFE-----RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR--SII 250
           R++     R+ +      +D   L     + +     ++     L+  +  VH    + I
Sbjct: 205 RYKRARLRRLGLLLAEEGLDQARLAATAARLRRAADALDGWAERLVRDHCRVHPAGPAEI 264

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
           A++      +   L  L R+  A  GG    P   ++E     L +G+    ++G VV+ 
Sbjct: 265 AVAPLAEAPEEVRLRSLSRLIRA-TGGAEHGPRLEALEPATAALLAGEAASRTLGGVVLR 323

Query: 311 RRANF--LWITRAVRNLPT-LILYPEETTVWDGRY 342
           R      LW  R  R  P  L L P E  +WDGRY
Sbjct: 324 RSGPVLRLWRERG-RTWPAPLDLAPGEDGIWDGRY 357


>gi|188584569|ref|YP_001928014.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001]
 gi|179348067|gb|ACB83479.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001]
          Length = 342

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 10/176 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DS  L+ A     + RS G+      +VDH LR  + +E   V  + +RL +
Sbjct: 28  LLAVSGGPDSTALMHA-----AARS-GRAGLRVATVDHALRPDSAEEAAEVGRLAARLGL 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H+ ++W   +  + + A AR ARY L+++HA  I A L++TAHT DDQ ETV MR    
Sbjct: 82  PHATLTWDVPRRGSRIQAEARAARYQLLADHAARIGAGLVLTAHTLDDQAETVLMRL--- 138

Query: 143 YAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
            A  G  GL+GM         + + RPFL   + D+ ++     + +  DPSN D+
Sbjct: 139 IAGSGPSGLAGMPVERPLAPGIRLVRPFLDLPKADLVAYCEAHRLPFLRDPSNADE 194


>gi|115526688|ref|YP_783599.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisA53]
 gi|115520635|gb|ABJ08619.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris BisA53]
          Length = 343

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 108/193 (55%), Gaps = 16/193 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISVDHCLRETAKDEVRYVSDVC 77
           I++AVSGG DS+ L+     VL+ R    +K      A+++DH LRE +  E R V  + 
Sbjct: 27  IVLAVSGGPDSLALM-----VLAARWRAALKRGPELIAVTIDHGLREASAREARDVKKLA 81

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L + H  + W+  KP +G+ AAAR ARYAL+++ A++  AT I TAHT DDQ ETV M
Sbjct: 82  GNLGLPHKTLRWRGDKPTSGIPAAARAARYALLAKAARSTGATHIFTAHTRDDQAETVLM 141

Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           R  R     G GL+G+           L ++RP L   +  + + L +  I +  DPSN+
Sbjct: 142 RLSR-----GSGLAGLAAMARQSERCGLQLARPLLGIAKSQLIATLAKARIEFAVDPSNS 196

Query: 196 DDRFERVRVRRFV 208
           D RF R R+RR +
Sbjct: 197 DPRFTRPRLRRLM 209


>gi|329848733|ref|ZP_08263761.1| tRNAIle-lysidine synthetase [Asticcacaulis biprosthecum C19]
 gi|328843796|gb|EGF93365.1| tRNAIle-lysidine synthetase [Asticcacaulis biprosthecum C19]
          Length = 410

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 140/324 (43%), Gaps = 18/324 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VAVSGG DS+ LL  L        +G+       VDH L+  +      V+     L+
Sbjct: 22  IGVAVSGGGDSVALLYQL------ADWGRRPLHVFHVDHALQADSGLWADAVAAHAKHLK 75

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           ++ + ++W   KP TG+ AAAR AR+AL++E A+     ++  AHT DD  E  YMR   
Sbjct: 76  LSFTRLTWSGDKPTTGISAAARGARHALLAEAARAAGIKVVCLAHTCDDVAEAAYMRQHG 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                    S       +   +++ RP L  RR D+R +L+ R +SW +DP+N + +  R
Sbjct: 136 SNVGTPQTWS-PSPVWPHGRGVFLCRPLLSARRADLRQYLMDRKLSWIDDPANENAKSLR 194

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-NID 260
           V+ R+ +       L L               V  L+          ++    D    + 
Sbjct: 195 VQARQAL-------LGLTSAPLPPPVRLPRGEVETLLHDPEGWSALGLLRFKADAFYQLP 247

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
           +    +LL  +A   GG   LP    +E +   L  G+   ++  R  I +   F+ + R
Sbjct: 248 NDTALHLLATAAVCAGGGDRLPRRHKVETLYESLADGRSHTLAGAR--IRQAGGFIHVLR 305

Query: 321 AVRNLPTLILYPEETTVWDGRYQF 344
              ++      P +  +WDGR+Q 
Sbjct: 306 EAGDI-GRNAEPGQGDLWDGRFQL 328


>gi|254440828|ref|ZP_05054321.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307]
 gi|198250906|gb|EDY75221.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307]
          Length = 430

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 98/190 (51%), Gaps = 6/190 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I VAVSGG DSM LL   H  +   +   +   A++VDH LR  A DE   V+  C 
Sbjct: 30  PKKIGVAVSGGGDSMALL---HMCIWWANLVGVTVEAVTVDHGLRAEAADEAAVVAAFCK 86

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              ++HSV++W  +  +  + AAAREARYAL++  AK+     +M  HT DD  ET  MR
Sbjct: 87  DQGVSHSVLNWDGALAEGNVQAAAREARYALMAGWAKSRGIAHMMLGHTADDIAETFLMR 146

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GL+ M      D   W +RP     R  +R++L + ++ W EDPSN D  
Sbjct: 147 LARTSGVD--GLAAMDARFDRDGVKW-ARPLWEQPRAQLRNYLRRHDVGWVEDPSNEDLS 203

Query: 199 FERVRVRRFV 208
             R + R+ +
Sbjct: 204 QTRPKARKIL 213


>gi|15891990|ref|NP_359704.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7]
 gi|20140671|sp|Q92JK0|TILS_RICCN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15619104|gb|AAL02605.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7]
          Length = 478

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     + ++  +L++ NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVRHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRR 206
            R  +R+
Sbjct: 193 RRNVIRQ 199


>gi|34580975|ref|ZP_00142455.1| cell cycle protein MesJ [Rickettsia sibirica 246]
 gi|28262360|gb|EAA25864.1| cell cycle protein MesJ [Rickettsia sibirica 246]
          Length = 478

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 104/187 (55%), Gaps = 7/187 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     + ++  +L++ NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVRHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRR 206
            R  +R+
Sbjct: 193 RRNVIRQ 199


>gi|83312306|ref|YP_422570.1| ATPase [Magnetospirillum magneticum AMB-1]
 gi|82947147|dbj|BAE52011.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Magnetospirillum magneticum AMB-1]
          Length = 443

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 149/354 (42%), Gaps = 22/354 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG+DS+ L +        R     +  A++VDH LR  +  E   V    +R  
Sbjct: 27  LAVAVSGGADSLALALLAADWAKARGG---EVLALTVDHRLRPESAAEAARVGAWLARDG 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I+H +++W+  KP   L AAAR ARY L+ E         +  AH  DDQ ET+ +R  R
Sbjct: 84  ISHRILAWEGDKPAADLQAAARAARYGLLGEACAAEGILHLALAHHQDDQAETLLLRLGR 143

Query: 142 DYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G GL G+          W  + RP L   R  + + L  R   W  DPSN +  F
Sbjct: 144 -----GSGLEGLGAMAAERPTSWGRLLRPLLPVPRVRLEATLRHRGQEWTSDPSNRNPAF 198

Query: 200 ERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            RVR+R    D+    +  +       +    +  V++ VA    +++T+       +  
Sbjct: 199 ARVRLRHLAGDLAAEGMTPRRLAETAGRLARAQAAVDSMVAEAAARHVTLDPAGFGRLRP 258

Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           + L  +   +   LL       GG+   P    +ER+   L  G     ++    I  + 
Sbjct: 259 EALAGLPDEVGLRLLAGLLLSVGGEAHTPRLERLERLHATLCGGLEAARTLAGCRIVPQG 318

Query: 314 NFLWITR-AVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRK 361
           + + + R   R  P L L P     WDGR++     D+     L  +GP+  RK
Sbjct: 319 DSVVLCREPARVAPPLDLVPGSRIRWDGRFEAVVAGDAPPGLRLGALGPEGRRK 372


>gi|157964107|ref|YP_001498931.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5]
 gi|166988065|sp|A8F0E8|TILS_RICM5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157843883|gb|ABV84384.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5]
          Length = 477

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 7/187 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRR 206
            R  +R+
Sbjct: 193 RRNVIRQ 199


>gi|157827938|ref|YP_001494180.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932627|ref|YP_001649416.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa]
 gi|166988066|sp|A8GQJ7|TILS_RICRS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|189035969|sp|B0BVY4|TILS_RICRO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157800419|gb|ABV75672.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907714|gb|ABY72010.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa]
          Length = 478

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 7/187 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSN----INWYNNIHIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRR 206
            R  +R+
Sbjct: 193 RRNVIRQ 199


>gi|320334320|ref|YP_004171031.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
 gi|319755609|gb|ADV67366.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
          Length = 529

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 94/191 (49%), Gaps = 20/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG+DS+ LL+  H           +  A + DH LR  +  +V +V DVC+RL 
Sbjct: 19  VLVAVSGGADSVALLLGAHEA-------GARVVAATFDHQLRADSAQDVAFVQDVCARLG 71

Query: 82  IAHSVVSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V     ++        + AAAR  RYA ++  AK     +I+TAHT  D  ET  M
Sbjct: 72  VPCEVGGADVARVARARGWSVEAAARTLRYAFLTRAAKARRVDVILTAHTARDDAETYLM 131

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
            + R  A           T + + N  + RP+LR  R D+ ++L  R  +W EDPSN D 
Sbjct: 132 EALRGEAHP---------TGIPEANGHVRRPWLRAARADVEAYLQARAQAWREDPSNADT 182

Query: 198 RFERVRVRRFV 208
            F R  VR  V
Sbjct: 183 YFTRNWVRHAV 193


>gi|238650509|ref|YP_002916361.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic]
 gi|259533756|sp|C4K162|TILS_RICPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|238624607|gb|ACR47313.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic]
          Length = 533

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 101/183 (55%), Gaps = 7/183 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + L   
Sbjct: 24  IAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNSLNRK 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R +R+ 
Sbjct: 81  HYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRLERNS 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G+  S     I +  N+ I RP     + ++  +L+  NI W ED SN+ D++ R  
Sbjct: 141 GIFGLSSSN----INWYNNIHIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKYRRNV 196

Query: 204 VRR 206
           +R+
Sbjct: 197 IRQ 199


>gi|154252572|ref|YP_001413396.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1]
 gi|154156522|gb|ABS63739.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 443

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 165/373 (44%), Gaps = 51/373 (13%)

Query: 4   SPIESVRFFVR-SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           SP+    F  R S++ P+  I +A SGG DS+ LLI L +  + +  G I   A +VDH 
Sbjct: 13  SPVSPAEFSTRLSVLKPSKKIAIAFSGGPDSLALLI-LAAEWAKKRRG-ISLVAFTVDHG 70

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  +  E +  + +   L + H  + W+  KP  G+ AAAR+ARYAL+    ++  A  
Sbjct: 71  LRAASAAEAKAAARLSDELGVPHRTLKWRGVKPAKGIQAAARDARYALLLAACRSFGAGD 130

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWIS--RPFLRCRRE 175
           ++ AH  +DQ ET  +R  R     G G+ G+        L D    +   RP +   R 
Sbjct: 131 LLVAHHLEDQAETFLLRLAR-----GSGVDGLAAMPRARPLSDEEPAVRLLRPLIDLPRS 185

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-----LYLKMKKFQDLRVKV 230
            + + + +  ++   DPSN ++RF+RV+ R+ +  +         L    +     R+ +
Sbjct: 186 RLLATVARAGLTAIHDPSNENERFDRVKARKALALLAPLGLDAARLARTAEHMARARLAL 245

Query: 231 NNAVAMLIP--------KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC---GGQI 279
            +  A L+          ++ ++M + +A   +I           LRV  A+C   GG  
Sbjct: 246 EDETAALLRTHAVLSSFGHVEINMAAFLAAPAEI----------GLRVLGALCRIVGGGG 295

Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGR----VVIDRRANFLWITR---AVRNLPTLILYP 332
             P    +E V    ++   G +  GR    V +      L  TR   A +  P +IL  
Sbjct: 296 YGPRMEGLEEVY---QAAGTGTLGKGRTLHGVKLAASRGSLVATRELEAAKKSPAIILKA 352

Query: 333 EETTVWDGRYQFQ 345
            E  +WD R+  +
Sbjct: 353 GEEGLWDRRFDIR 365


>gi|229586277|ref|YP_002844778.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5]
 gi|259533753|sp|C3PM75|TILS_RICAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|228021327|gb|ACP53035.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5]
          Length = 478

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 7/187 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFYHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     +  +  +L++ NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSKLVEYLVRHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRR 206
            R  +R+
Sbjct: 193 RRNVIRQ 199


>gi|239946943|ref|ZP_04698696.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921219|gb|EER21243.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 482

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 7/187 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALL-YLANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L    RE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERTREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSN----INWYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRR 206
            R  +R+
Sbjct: 193 RRNVIRQ 199


>gi|114765728|ref|ZP_01444826.1| Probable cell cycle protein [Pelagibaca bermudensis HTCC2601]
 gi|114541945|gb|EAU44980.1| Probable cell cycle protein [Roseovarius sp. HTCC2601]
          Length = 448

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 100/222 (45%), Gaps = 31/222 (13%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +P+ I++AVSGG DSM +L   H+          +   ++VDH LR  A +E   V + C
Sbjct: 24  FPSDIVLAVSGGGDSMAMLTLAHNWAH---VWGTRLWVVTVDHGLRPEAGNEAALVRETC 80

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L   H+ + W+    Q  LM AAR AR  LI      ++  L+  AHT DD  ET  M
Sbjct: 81  DELGHPHTTLRWRWDG-QGNLMDAARRARLDLIGRWRGGLSHVLL--AHTRDDVAETFLM 137

Query: 138 RSQRDYAEKGMGLSGM------------------CD-----TILYDLNLWISRPFLRCRR 174
           R  R     G  LS M                  CD            L I RP L  RR
Sbjct: 138 RLARGSGVDG--LSAMTPLREVAETGATPLDPEACDGARPPEAAVPSGLTIVRPCLDMRR 195

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
            ++R +L      W EDP+N DD +ER R+R+ +R ++   L
Sbjct: 196 AELRHYLRVLKGRWVEDPTNEDDHYERARIRKLLRGLEAEGL 237


>gi|257871355|ref|ZP_05651008.1| PP-loop family protein [Enterococcus gallinarum EG2]
 gi|257805519|gb|EEV34341.1| PP-loop family protein [Enterococcus gallinarum EG2]
          Length = 461

 Score =  100 bits (250), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 9/190 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V  A  L+AVS G DSM LL  +  +    +FG        V+H LRE + DE  ++ D 
Sbjct: 16  VEDATCLLAVSTGVDSMVLLHVIEELFQQGTFG-----VAHVNHNLREASDDEAAFLKDY 70

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    I +    W++  PQ G+ AAARE RY   +E     +   ++TAH  DDQ+ET+ 
Sbjct: 71  CQTRGIPYYERVWQDP-PQNGIEAAAREFRYHFFAETMTLQSYDWLLTAHHADDQMETML 129

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R+   +    SG+     +  N ++ RPFL   +E+IR +  +R I++ ED +N  
Sbjct: 130 MKMVRE--GRLQNASGIKRKQPFG-NGYLIRPFLTIAKEEIRDYARRRGIAYFEDETNQQ 186

Query: 197 DRFERVRVRR 206
             F+R R+R 
Sbjct: 187 TLFQRNRLRH 196


>gi|323138991|ref|ZP_08074051.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
 gi|322395745|gb|EFX98286.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
          Length = 332

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/248 (31%), Positives = 120/248 (48%), Gaps = 12/248 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DS+ L++ L +   DR    I  +  +VDH LR  A+ E   V    + L 
Sbjct: 19  LLLAVSGGPDSVALML-LAAQWPDRRSHDIAVA--TVDHGLRPEARREAEQVGAWANALG 75

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             H V++W+  KP+T +   AR ARYAL+++ A  I A  I+TAH  DDQ ET+  R  R
Sbjct: 76  FPHHVLTWQGEKPRTRVQERARTARYALLADCAGRIGAGAIVTAHHADDQAETILFRLTR 135

Query: 142 DYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G G++G+           + + RP L  R+  +     + +  +  DPSN D+ +
Sbjct: 136 -----GSGVAGLAGMTAESRCGGVALLRPLLGLRKAALEEICRRCDHDYFRDPSNIDEHY 190

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R R+R+  R + L A  L  +    L  +  +A A L         R+I+ +  +    
Sbjct: 191 ARARLRKL-RPL-LAAQGLDDEALLRLGQRAAHADAALNFCAENARERAIVDVDSETARF 248

Query: 260 DSTLLFYL 267
           D+  L  L
Sbjct: 249 DAAALREL 256


>gi|254419185|ref|ZP_05032909.1| PP-loop family [Brevundimonas sp. BAL3]
 gi|196185362|gb|EDX80338.1| PP-loop family [Brevundimonas sp. BAL3]
          Length = 449

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 153/355 (43%), Gaps = 51/355 (14%)

Query: 9   VRFFVR-----SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
            R F R     S   P  + +A+SGG DS  + +   +    R+ G+   +A+SVDH L 
Sbjct: 16  ARVFARLDRRLSSDAPQPVALALSGGGDS--IALLRLAAAWARARGR-PLTALSVDHRLN 72

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + D  R+  +           + W   KP TGL AAAR AR+ LI+E A+ I A +++
Sbjct: 73  PASADWTRFAGEAARAAGADWRGLVWDGDKPATGLTAAARAARHRLIAEAARAIGARVVL 132

Query: 124 TAHTFDDQLETVYMRSQ-------RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            AHT DD  E   MR++       R+++   +   G          L + RP L  RRE 
Sbjct: 133 FAHTADDIAEADLMRAEGSTLGRVREWSPSPVWPEGR--------GLMLLRPLLDERRET 184

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +R++L  +   W EDP+N D RF R R RR +             +     +  N+   +
Sbjct: 185 LRAWLAGQGAEWIEDPANADPRFGRSRARRALAGTVPDGAAAGRDRPSSEGITANHDGTV 244

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC-GGQISLPGYRSMERVMLFLK 295
            I +   V  R + A                    A +C GG  + P    ++R+M  L+
Sbjct: 245 RIAR--DVRARGLAA--------------------ALVCVGGGATPPRGDRLDRLMQRLQ 282

Query: 296 SGKRGCVSIGRVVIDRRANFLWITR-----AVRNLPTLILYPEETTVWDGRYQFQ 345
            G+    ++    ++     + + R     A R  P L+L+P    VWDGR+ F+
Sbjct: 283 VGEDFAAALCGARVEADGETILLMREAGELARRAPPPLLLHPGVEAVWDGRFAFR 337


>gi|307294669|ref|ZP_07574511.1| tRNA(Ile)-lysidine synthetase [Sphingobium chlorophenolicum L-1]
 gi|306879143|gb|EFN10361.1| tRNA(Ile)-lysidine synthetase [Sphingobium chlorophenolicum L-1]
          Length = 314

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VAVSGG DSM LL      L+ R+F   +  A +VDH LRE + DE   V+D C    IA
Sbjct: 28  VAVSGGPDSMALLD-----LAARAFSG-RVEAATVDHGLREASADEAAMVADWCGNAGIA 81

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H+ +  K +  +  + + AR  RYAL+ E         ++TAH  DDQLET+ MR  R  
Sbjct: 82  HATLHPKGAV-RGNVQSWARSQRYALLEEWRTAQGLDWLLTAHHADDQLETLLMRLNRGA 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G+        ++        RP L  R+ ++ ++ L++++ + +DPSN+D RF+R  
Sbjct: 141 GVGGLAGVRARQGVVL-------RPLLGMRKAELLAYALEQDLPYIDDPSNSDPRFDRAA 193

Query: 204 VRRFVRDID 212
           +R  +  +D
Sbjct: 194 LRSALAGVD 202


>gi|91978603|ref|YP_571262.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisB5]
 gi|91685059|gb|ABE41361.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisB5]
          Length = 347

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/210 (38%), Positives = 106/210 (50%), Gaps = 13/210 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK----FSAISV 58
           +S  E+   F      PA I++AVSGG DS+ LL      L+ R    +K       ++V
Sbjct: 9   ISAREASHLFADWKAVPA-IVLAVSGGPDSLALLW-----LAARWRKALKRGPALGVVTV 62

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH LR  A  E R V  +   L + H  + W   KP TGL AAAR ARY L+++ AK   
Sbjct: 63  DHGLRPEAAREARAVKQLARTLDLPHRTLRWTGEKPTTGLPAAARAARYRLLAKAAKRFG 122

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT IMTAHT DDQ ETV MR  R       GL+ M      D  + + RP L   ++ + 
Sbjct: 123 ATHIMTAHTRDDQAETVLMRLSRGSGI--AGLAAMARETERDGAVLV-RPLLDVSKQRLI 179

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           + L +  I +  DPSN D RF R R R  +
Sbjct: 180 ATLSKAQIEYTTDPSNLDPRFTRPRWRELM 209


>gi|58336616|ref|YP_193201.1| cell cycle [Lactobacillus acidophilus NCFM]
 gi|58253933|gb|AAV42170.1| putative cell cycle [Lactobacillus acidophilus NCFM]
          Length = 423

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 100/188 (53%), Gaps = 7/188 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM LL  L  +   + F  I   A   +H LR  +++E R + D C +  
Sbjct: 24  LLVAASGGPDSMALLDMLKDLQKKQKFELI---AAHFNHQLRSDSEEETRILKDYCQKNE 80

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I   V  W KN +P++G+ AAARE RY  +++ AK   A  ++TAH  DD +E + ++  
Sbjct: 81  IPLFVAKWAKNEQPKSGIEAAAREVRYNFLTKIAKNETADYLLTAHHGDDLIENILLKFI 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + M  S     +++ + L   RP L   +++I ++  +R IS+  D +N +D   
Sbjct: 141 RSGNPEEMN-SLQAVGVMHGVTLL--RPLLSSSKQEILAYDKERGISFIVDSTNKEDDTM 197

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 198 RNRMRHHV 205


>gi|46201289|ref|ZP_00055345.2| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Magnetospirillum magnetotacticum
           MS-1]
          Length = 429

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 152/361 (42%), Gaps = 36/361 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG+DS+ L +        R     +  A++VDH LR  +  E   V +      
Sbjct: 13  LAVAVSGGADSLALALLAAQWARARGG---EVLALTVDHRLRPDSTAEAERVGEWLGGEG 69

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           IAH +++W+  KP   L AAAR ARY L+ E         ++ AH  DDQ ET+ +R  R
Sbjct: 70  IAHRILAWEGDKPAADLQAAARAARYRLLGEACAAEGILHLLVAHHQDDQAETLLLRLGR 129

Query: 142 DYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G GL G+          W  + RP L   R  + +FL  R   W +DPSN ++ F
Sbjct: 130 -----GSGLDGLSAMAPERPTAWGRLLRPLLVVPRARLEAFLRHRGQDWVQDPSNRNEAF 184

Query: 200 ERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            RVR+RR   D+    +  +       +    +  V+  VA    +++T+       +  
Sbjct: 185 ARVRLRRLAGDLAAEGMTAQRLGQTAGRLARAQTAVDAMVAEAAARHVTLDPAGYARLQP 244

Query: 255 DILNIDSTLLFYLLRVSAAIC-GGQISLPGYRSMERVMLFLKSGKR------GC--VSIG 305
            +L      +   L     +C GG+   P    +ER+   L +G        GC  V +G
Sbjct: 245 KVLARLPEEVGLRLLARLLLCVGGEDVTPRLERLERLYTALTAGLETARTLAGCRIVPVG 304

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYR 360
             VI  R          R  P + L P     WDGR++     D+     L  +GPQ   
Sbjct: 305 ETVIICR-------EPARMSPPVDLAPGTRIRWDGRFEAMVARDASPGLRLGGLGPQGRS 357

Query: 361 K 361
           K
Sbjct: 358 K 358


>gi|319409313|emb|CBI82957.1| tRNA(Ile)-lysidine synthase [Bartonella schoenbuchensis R1]
          Length = 518

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 1/129 (0%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS+ LL  L            +   ++VDH LRE +  E + V+++C   +I 
Sbjct: 1   MAASGGGDSLALLFLLKDYFKT-LLSPPEIIVVTVDHQLREESACEAQKVAEICRAYQIK 59

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H +V W+ +KP+T +   AR ARY L+ + A+   ATLIMT HT +DQ+ET YMR QR  
Sbjct: 60  HVIVRWEGTKPKTDISQKARVARYDLLFQEAEKQGATLIMTGHTLNDQVETYYMRCQRVL 119

Query: 144 AEKGMGLSG 152
            +K +   G
Sbjct: 120 KDKAVSQKG 128



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 5/202 (2%)

Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           GLS +    L    + + RP L  +R+ +R++L  R I W +DP+N D RFERVRVR  +
Sbjct: 203 GLSCIAREALLRRKVRLIRPLLGIKRDSLRAYLRLRGIEWIDDPTNDDLRFERVRVRHSI 262

Query: 209 RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQDILNIDSTLLFY 266
              D   +  K+ +    R +    +A LI     V  + R  I   +  L       F 
Sbjct: 263 HFKDFSEVAQKVNEAALKRRQYAQMIADLILALDIVVEYGRCFIKRPEPFLCRHPGFPF- 321

Query: 267 LLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
           ++ + A + GG   L   + +  +   L L S ++   ++   +I+     +   R  RN
Sbjct: 322 VVGLFAVLMGGSPYLLASQKLSALNQKLCLHSLEKKRFTLAGSLIEYGQKGIAFWREARN 381

Query: 325 LPTLILYPEETTVWDGRYQFQN 346
           +   I+ P +T +WDGRYQ  N
Sbjct: 382 IQEAIILPGQTFLWDGRYQITN 403


>gi|254360930|ref|ZP_04977076.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica PHL213]
 gi|261493843|ref|ZP_05990355.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495109|ref|ZP_05991573.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153092409|gb|EDN73472.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica PHL213]
 gi|261309179|gb|EEY10418.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310445|gb|EEY11636.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 421

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 142/328 (43%), Gaps = 33/328 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSRL 80
           L+ +SGG DS+ LL           F +  F   AI V H L   A D   +    C RL
Sbjct: 22  LIGLSGGVDSVVLL---------HLFARTSFHVRAIYVHHGLSPNADDWAAFCEQYCKRL 72

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   ++         G+   AREARY  I +  K     +  TAH  DDQ ET  +  +
Sbjct: 73  NIPF-ILQKVRVDSSNGVENGAREARYQAIQQQLKP--NEVFATAHHLDDQAETFLLALK 129

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M   + +  N  + RP L   + D+  + +Q  + W ED SN D+R++
Sbjct: 130 RGSGVKG--LSAM-QAVTFLQNFTVFRPLLTFTKSDLMGYAVQHQLGWIEDESNADNRYD 186

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R+  L  L  + + F  +  +     A    LI + L+  ++S     Q  L
Sbjct: 187 ----RNFLRNSILPLLNQRWQHFSQMVARSAQHCAEQQALIEELLSNELKSRTGEKQQ-L 241

Query: 258 NIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVID 310
           NI+    F L +        +    + +P    ++ V   ++F K+ K   V +G  +I 
Sbjct: 242 NINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQAVISELIFAKADKNPQVKVGENIIR 301

Query: 311 RRANFLWITRAVRNLPTL-ILYPEETTV 337
           R    +++T  + ++P   ++ P ET V
Sbjct: 302 RYQQAIYVTEEIADIPPFEVVLPTETKV 329


>gi|227903173|ref|ZP_04020978.1| cell cycle [Lactobacillus acidophilus ATCC 4796]
 gi|227868978|gb|EEJ76399.1| cell cycle [Lactobacillus acidophilus ATCC 4796]
          Length = 418

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 100/188 (53%), Gaps = 7/188 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM LL  L  +   + F  I   A   +H LR  +++E R + D C +  
Sbjct: 19  LLVAASGGPDSMALLDMLKDLQKKQKFELI---AAHFNHQLRSDSEEETRILKDYCQKNE 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I   V  W KN +P++G+ AAARE RY  +++ AK   A  ++TAH  DD +E + ++  
Sbjct: 76  IPLFVAKWAKNEQPKSGIEAAAREVRYNFLTKIAKNETADYLLTAHHGDDLIENILLKFI 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + M  S     +++ + L   RP L   +++I ++  +R IS+  D +N +D   
Sbjct: 136 RSGNPEEMN-SLQAVGVMHGVTLL--RPLLSSSKQEILAYDKERGISFIVDSTNKEDDTM 192

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 193 RNRMRHHV 200


>gi|85714373|ref|ZP_01045361.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A]
 gi|85698820|gb|EAQ36689.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A]
          Length = 337

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 102/184 (55%), Gaps = 4/184 (2%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGG DSM L+       S  + G     A++VDH LR  +  E R V ++ + L 
Sbjct: 21  LVLAVSGGPDSMALMWLAARWRSAMTRGP-DLIAVTVDHGLRRGSAREARDVKNLATSLG 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H  + W  +KP++GL AAAR ARY L++  A+   A+ I+TAHT DDQ ETV MR  R
Sbjct: 80  VTHRTLRWSGAKPESGLPAAARAARYRLLARTARANGASHILTAHTRDDQAETVLMRISR 139

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GLS M    + D    ++RPFL   +  + + L +  I + EDP+N D  F R
Sbjct: 140 GSGI--AGLSAMARETMRD-GFILARPFLNVPKSRLIATLKKAKIDYVEDPTNRDLNFTR 196

Query: 202 VRVR 205
            R+R
Sbjct: 197 PRLR 200


>gi|319648591|ref|ZP_08002805.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2]
 gi|317389358|gb|EFV70171.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2]
          Length = 469

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 24/242 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++  VSGG DSM LL ALH  +           A  VDH  R E ++ ++R+V D C   
Sbjct: 13  LIAGVSGGPDSMALLHALHHTVP----ASATLIAAHVDHMFRGEESERDMRFVQDYCEAE 68

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    V        ++      AAARE RYA   E  K   A  ++  H  DDQ+ET+ 
Sbjct: 69  GIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQVETML 128

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  +     G+GL+G+     +D   W+ RPFLR  ++D+ ++  +  I +  DPSN++
Sbjct: 129 MKMAKGTV--GIGLAGIQPKRRFDSG-WLLRPFLRLSKDDLLAYCKENRIPFRTDPSNSE 185

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           D + R R R        H L    K+ +D+  +  +     + ++LT     + A+++D 
Sbjct: 186 DDYTRNRFRH-------HVLPFLKKESEDVHKRFQS-----VSEFLTEDELYLQALTKDK 233

Query: 257 LN 258
           +N
Sbjct: 234 MN 235


>gi|326402603|ref|YP_004282684.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301]
 gi|325049464|dbj|BAJ79802.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301]
          Length = 389

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 156/375 (41%), Gaps = 32/375 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V VSGG+DSM L +   S   +R    +   A   DH LR  + DE        + L 
Sbjct: 13  VAVGVSGGADSMALTLLAASWARERGGDCLGLIA---DHGLRPVSADEASLTGRRLAALG 69

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I + ++  +   P   L A AR+AR+A ++  A+      ++  H   DQ E   MR+ R
Sbjct: 70  IGYRILRLQLG-PGPALQARARDARHASLAAAARGAGIVHLLLGHHAGDQDELRAMRAAR 128

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GL+GM      D ++ I RP L      +R FL  R I W EDPSN D RFER
Sbjct: 129 GP----RGLAGMAGFAARD-DIVILRPLLGTDPAVLREFLSGRGIGWVEDPSNADARFER 183

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
           VRVR   R   L    L      D R      VA ++ + +++       +    L +++
Sbjct: 184 VRVRATRRQAALVPPSLD----ADRRAAAERDVAEILVRDVSLRPEGWAIVRAASLPVEA 239

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
             L  L RV     GG    P   ++ER+   L+    G V   R++   R    W+   
Sbjct: 240 --LAVLFRV----LGGAAYPPARAALERLAPELRPATLGGV---RIMAAGRHGPGWLLVR 290

Query: 322 VRNLPTLILYPEETTVWDGRYQFQN----------LSDSLIQIGPQSYRKADVPSGIPPI 371
                   +      VWDGR++ ++          L DS  +IG +S   A +   +P  
Sbjct: 291 EAAACAPPVAAVRGAVWDGRFRVRDVPPGARTIGALGDSAAEIGRRSGLPAALRRTLPAF 350

Query: 372 IAQRALSSMPSKEGG 386
                + S+P   GG
Sbjct: 351 FGGDGVLSVPHLAGG 365


>gi|258543660|ref|YP_003189093.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634738|dbj|BAI00714.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637794|dbj|BAI03763.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640848|dbj|BAI06810.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643903|dbj|BAI09858.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646958|dbj|BAI12906.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650011|dbj|BAI15952.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653001|dbj|BAI18935.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656055|dbj|BAI21982.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-12]
          Length = 435

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 144/333 (43%), Gaps = 24/333 (7%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           FF     YP  I +AVSGG DS+ L           SF +    A+ VDH LR  +  E 
Sbjct: 37  FFPDQSDYPP-IAMAVSGGGDSLCLAWLA-------SFWRKNLLALVVDHGLRPESGQEA 88

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +        + I   ++   + K  + +   AREARYA +    +    T ++  H  DD
Sbjct: 89  QQTIARLRAMNIPAQLLVLTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV+MR       +G+   G   T+  D+ L   RP L   R  +R+ L Q ++ W +
Sbjct: 149 LAETVWMRQNSSSGPEGLAGMGWI-TVRPDIRL--IRPLLGFSRTALRNTLRQAHLEWVD 205

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           DPSN D R ERVR+R  +++ D  A + K+  +   LR++     A+ + +++ +     
Sbjct: 206 DPSNQDQRAERVRLRFLLQENDQRAHFWKLGMQSGQLRMRKERERAVQLAQHVVMCPEGW 265

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           +A+  ++ ++D  +L  L+R         I    Y   +  ++ LK         G  +I
Sbjct: 266 VALGPELPDVD--VLAALIR--------SIGGAAYPPAQSAVVRLKDMATEATLAGTRLI 315

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRY 342
             R    W+              E  TVWD R+
Sbjct: 316 --RHAQKWMLMREAAAMAPAQQAENGTVWDNRF 346


>gi|68171364|ref|ZP_00544759.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999214|gb|EAM85869.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa]
          Length = 442

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 156/370 (42%), Gaps = 23/370 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DSM LL   H  LS R   K     ++V+H LR  A  E  +V      L + 
Sbjct: 29  IAVSGGIDSMTLL---H--LSARYCNKNTPIVLTVNHGLRPEAAQEALFVFQHSQNLNLK 83

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +++W    P++ + ++AR  RY L+ +         +M AH  +DQ ET+ +R     
Sbjct: 84  CHILNWHGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQAETIMIR----- 138

Query: 144 AEKGMGLSGMCDTILYD-LN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            E+G GL G+     Y  LN + I RP L   R ++  +  + NI+W  D SN + +++R
Sbjct: 139 LERGSGLDGLAGMQEYTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNNNKKYKR 198

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              R  +   D     ++ LY   +  +     + + V +   + L       I I  DI
Sbjct: 199 TLYRNMLEITDNPEVLINRLYTASEHIKRSLNCILHYVRLATDQCLEFTNLGHINIKLDI 258

Query: 257 -LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRA 313
            L +   +   LL  S    G Q   P Y  +  +   +K+ K        G  +     
Sbjct: 259 FLTLPEEISIRLLTYSIMSIGQQKYKPRYSKLSNIFSKIKNNKHKIAQTLCGCKITTNHN 318

Query: 314 NFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371
           N + ITR V  +  L +      V  WD R++   ++ +   +   S     +P  +   
Sbjct: 319 NIISITREVSAIQELTINSATNIVIEWDNRFKISIVNSNADNVTVSSLNNNYIPEELKK- 377

Query: 372 IAQRALSSMP 381
           + + A+  +P
Sbjct: 378 LHREAVRCLP 387


>gi|85706708|ref|ZP_01037800.1| PP-loop family protein [Roseovarius sp. 217]
 gi|85668766|gb|EAQ23635.1| PP-loop family protein [Roseovarius sp. 217]
          Length = 419

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 147/352 (41%), Gaps = 28/352 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGGSDS+ LL  LH     +  G    +A++VDH LR  A  E   V+ +C+
Sbjct: 21  PPRLGVAVSGGSDSLALLHLLHDW---QRAGGPALAAVTVDHGLRPEAGAEAAEVAHICA 77

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           RL + H  + W+       L   AR ARY L+S+ A     T I   HT DD  ET  MR
Sbjct: 78  RLNVPHHTLHWQGCGGSGNLPDRARRARYTLMSDWAAAQGLTDIAIGHTQDDLAETFLMR 137

Query: 139 SQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R     G G+ G+           +   RP L   RE +R  L     +W +DP+N D
Sbjct: 138 LAR-----GAGVDGLAAMRPRWTQEGVTFHRPLLGLAREALRDHLRGLRQTWIDDPTNVD 192

Query: 197 DRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
             + R R R  +       +D   L        D R  +++           V    ++ 
Sbjct: 193 TSYLRPRAREILAALAPLGLDAATLAEVACNLSDARTALSHTTHAAARTLTRVEAGDLLI 252

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
                 N+   +   LL  +     G    P   ++  ++   ++G+   +  G +++  
Sbjct: 253 DHAGFANLPDEIARRLLHGALQWLTGAEYPPRGAALSALLAAARAGQTMTLQ-GGLLLPA 311

Query: 312 RANFLWITR---AVRNLPTLILYPEETTVWDGRYQFQNLSD----SLIQIGP 356
           ++  L +TR   AV++L T       T +WD R+Q    SD     +  +GP
Sbjct: 312 KSGHLRLTREYDAVKDLRT-----PATALWDTRWQAIGPSDPADIEIAALGP 358


>gi|88657904|ref|YP_507881.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599361|gb|ABD44830.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 434

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 156/370 (42%), Gaps = 23/370 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DSM LL   H  LS R   K     ++V+H LR  A  E  +V      L + 
Sbjct: 21  IAVSGGIDSMTLL---H--LSARYCNKNTPIVLTVNHGLRPEAAQEALFVFQHSQNLNLK 75

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +++W    P++ + ++AR  RY L+ +         +M AH  +DQ ET+ +R     
Sbjct: 76  CHILNWHGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQAETIMIR----- 130

Query: 144 AEKGMGLSGMCDTILYD-LN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            E+G GL G+     Y  LN + I RP L   R ++  +  + NI+W  D SN + +++R
Sbjct: 131 LERGSGLDGLAGMQEYTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNNNKKYKR 190

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              R  +   D     ++ LY   +  +     + + V +   + L       I I  DI
Sbjct: 191 TLYRNMLEITDNPEVLINRLYTASEHIKRSLNCILHYVRLATDQCLEFTNLGHINIKLDI 250

Query: 257 -LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRA 313
            L +   +   LL  S    G Q   P Y  +  +   +K+ K        G  +     
Sbjct: 251 FLTLPEEISIRLLTYSIMSIGQQKYKPRYSKLSNIFSKIKNNKHKIAQTLCGCKITTNHN 310

Query: 314 NFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371
           N + ITR V  +  L +      V  WD R++   ++ +   +   S     +P  +   
Sbjct: 311 NIISITREVSAIQELTINSATNIVIEWDNRFKISIVNSNADNVTVSSLNNNYIPEELKK- 369

Query: 372 IAQRALSSMP 381
           + + A+  +P
Sbjct: 370 LHREAVRCLP 379


>gi|220925335|ref|YP_002500637.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060]
 gi|254789037|sp|B8IP16|TILS_METNO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|219949942|gb|ACL60334.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060]
          Length = 339

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 8/195 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGG DS  L+       + R    +     +VDH LR  A  E   V+ +  RL 
Sbjct: 29  VVLAVSGGPDSTALMGG-----AARLPPLVPVMVATVDHGLRPEAAAEAEAVARLAGRLG 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H +++W   KP+T L  AAR ARY L+ + A+   A  ++TAHT DDQ ETV MR   
Sbjct: 84  LPHRILAWTGPKPRTRLQEAARAARYRLLLDLAREQGAAALLTAHTLDDQAETVLMRLCA 143

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+   G  + + +   L + RPFL   +  + +        +  DP N D RF R
Sbjct: 144 GSGPAGL---GGIEPVRHLGGLALVRPFLDLPKARLVATCAAEGWPFVVDPGNADARFAR 200

Query: 202 VRVRRFVRDIDLHAL 216
            R+RR +  +    L
Sbjct: 201 GRLRRVMPHLAAEGL 215


>gi|52078562|ref|YP_077353.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis ATCC 14580]
 gi|52783924|ref|YP_089753.1| YacA [Bacillus licheniformis ATCC 14580]
 gi|61216472|sp|Q65PF4|TILS_BACLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52001773|gb|AAU21715.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis ATCC 14580]
 gi|52346426|gb|AAU39060.1| YacA [Bacillus licheniformis ATCC 14580]
          Length = 476

 Score = 97.4 bits (241), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 116/242 (47%), Gaps = 24/242 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++  VSGG DSM LL ALH  +           A  VDH  R E ++ ++R+V D C   
Sbjct: 20  LIAGVSGGPDSMALLHALHHTVP----ASATLIAAHVDHMFRGEESERDMRFVQDYCEAE 75

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    V        ++      AAARE RYA   E  K   A  ++  H  DDQ+ET+ 
Sbjct: 76  GIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQVETML 135

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  +     G+GL+G+     +D   W+ RPFL+  ++D+ ++  +  I +  DPSN++
Sbjct: 136 MKMAKGTV--GIGLAGIQPKRRFDSG-WLLRPFLKLSKDDLLAYCKENRIPFRTDPSNSE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           D + R R R        H L    K+ +D+  +  +     + ++LT     + A+++D 
Sbjct: 193 DDYTRNRFRH-------HVLPFLKKESEDVHKRFQS-----VSEFLTEDELYLQALTKDK 240

Query: 257 LN 258
           +N
Sbjct: 241 MN 242


>gi|209886399|ref|YP_002290256.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5]
 gi|209874595|gb|ACI94391.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5]
          Length = 338

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 111/206 (53%), Gaps = 11/206 (5%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHC 61
           +S  E+ + F      PA +L AVSGG DS+ LL    +    RS  K     A++VDH 
Sbjct: 11  ISAQEARQLFAGWKNLPALVL-AVSGGPDSVALLWL--AARWRRSLKKGPDLLAVTVDHG 67

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  A  E R V  + S L IAH  ++W+ +KP+TG+  AAREARY L++  A++ +A  
Sbjct: 68  LRAAAAHEAREVKRLASALGIAHRTLTWRGTKPKTGVPEAAREARYELLARAARSASAVA 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRS 179
           I TAHT DDQ ET+ MR  R     G GL+G+           ++  RP L   +  + +
Sbjct: 128 IATAHTQDDQAETILMRLTR-----GSGLTGLAGMAAQSERHGVALLRPLLDVPKARLVA 182

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
            L +  I++  DP+N D  + R R+R
Sbjct: 183 TLNRAKIAYANDPTNHDPAYTRSRLR 208


>gi|167767831|ref|ZP_02439884.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1]
 gi|167710570|gb|EDS21149.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1]
          Length = 480

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 14/192 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI++ VSGG+DS+ LL+ L+ +   R    +  +A+ ++H +R  A D+ ++V D+C +L
Sbjct: 31  HIIIGVSGGADSVYLLLILNEL---RESMNLTITAVHINHMIRREAVDDQKFVQDLCGQL 87

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   +    V     + +  L  A R+ARY   ++  K  NA  I  AH  +DQ ET  
Sbjct: 88  SILCKIFEIDVKQIAKREKMSLEEAGRKARYDAFAKTMKKYNADKIAIAHHQNDQAETFL 147

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G G+ G       D NL   RP L  ++E+I  +L +   +W ED SN D
Sbjct: 148 YRVVR-----GTGIYGAGAMREKDGNLI--RPLLCVKKEEIVKYLKEAGQAWVEDASNQD 200

Query: 197 DRFERVRVRRFV 208
           D F R ++R  V
Sbjct: 201 DAFARNQIRNQV 212


>gi|206890355|ref|YP_002248733.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742293|gb|ACI21350.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 460

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 98/191 (51%), Gaps = 15/191 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
           H+LV +SGG DS+ LL  L+ +   +S  K+K SA  +DH LR +    E+ +   +C  
Sbjct: 22  HVLVGLSGGPDSVCLLQILNIL---KSSYKLKISAAYIDHELRPDDVPKEIEFCKKLCES 78

Query: 80  LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I   V S        K +  +  AAR  RYA + + +  INA  I  AH  DDQ ETV
Sbjct: 79  LNIPFYVQSINVKDFAKKEKISIQEAARILRYAALDQISININAHKIAVAHNADDQAETV 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G G +G+    +  +   I RP +   R +I  FL ++NIS+  DPSN 
Sbjct: 139 IMRLLR-----GAGPAGLSG--IPPVRKKIIRPLIEIERTEIERFLSEKNISYIIDPSNE 191

Query: 196 DDRFERVRVRR 206
             ++ R ++R+
Sbjct: 192 SMKYLRNKIRK 202


>gi|88606751|ref|YP_505718.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ]
 gi|88597814|gb|ABD43284.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ]
          Length = 447

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 17/204 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           +R +V  A   VAVSGG DSM L  L+AL    S  S G    + ++V+H  R  A++EV
Sbjct: 1   MRDIVPNAQYAVAVSGGVDSMTLMRLVALFHK-SSASVGSP--TILTVNHGFRPEARNEV 57

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +V    + L +   ++ W+N   +      AR  RY L+ +     N  +++TAHT +D
Sbjct: 58  SFVHKQATMLGLECHMLHWENPIRKKS-QVVARNIRYQLLLQWCSAHNVKVLLTAHTKND 116

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCD----TILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           Q ETV +R      E+G G+ G+      +++ D+   I RP L   R +I+ + +Q   
Sbjct: 117 QAETVLIR-----LERGSGIDGLAGIRERSVIGDVT--IIRPLLDFTRREIQEYAIQHQQ 169

Query: 187 SWCEDPSNTDDRFERVRVRRFVRD 210
            W EDPSN+D ++ R   R F+ +
Sbjct: 170 PWIEDPSNSDPKYRRTFYRNFINN 193


>gi|87307758|ref|ZP_01089901.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645]
 gi|87289372|gb|EAQ81263.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645]
          Length = 328

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 107/196 (54%), Gaps = 14/196 (7%)

Query: 18  YPAH------ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           +P H      ++VAVSGG+DS+ LL +L ++   R  G  +  A+ VDH LR+ +  + +
Sbjct: 12  WPPHSWSDCTVMVAVSGGADSVALLRSLAAI---RESGPGRLIAVHVDHNLRKESDTDAQ 68

Query: 72  YVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +V+ +  +L I   +  V ++ S P  G+ AAAR ARY  +   A    A  ++TAHT D
Sbjct: 69  FVAQLAQQLGIEGILGRVDFELSGPD-GIEAAARSARYGFLRTFAMDHGARYVVTAHTAD 127

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ+ETV  R  R  +    GLSG+      +L + + RP L  RR ++ ++L     ++ 
Sbjct: 128 DQIETVLHRILRGTSLA--GLSGIPRARELELGISLLRPMLSIRRSEVEAYLADLGQTFR 185

Query: 190 EDPSNTDDRFERVRVR 205
            D +N + RF R R+R
Sbjct: 186 HDETNDESRFFRNRLR 201


>gi|148259382|ref|YP_001233509.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5]
 gi|146401063|gb|ABQ29590.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5]
          Length = 390

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 152/375 (40%), Gaps = 32/375 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V VSGG+DSM L +   S   +R    +   A   DH LR  + DE        + L 
Sbjct: 14  VAVGVSGGADSMALTLLAASWARERGGDCLGLIA---DHGLRPESADEASLTGRRLAALG 70

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I + ++  +   P   L A AR+AR+A ++  A+      ++  H   DQ E   MR+ R
Sbjct: 71  IGYRILRLQLG-PGPALQARARDARHASLAAAARGAGIVHLLLGHHAGDQDELRAMRAAR 129

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GL+GM      D ++ I RP L      +R FL  R I W EDPSN D RFER
Sbjct: 130 GP----RGLAGMAGFAARD-DIVILRPLLGTDPAVLREFLSGRGIGWVEDPSNADARFER 184

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
           VRVR   R   L    L      D R      VA  + + +++       +    L +++
Sbjct: 185 VRVRATRRQAALVPPSLD----ADRRAAAERDVAETLARNVSLRPEGWAIVRAASLPVEA 240

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
             L  L RV     GG    P   ++ER+   L+    G V   R++   R    W+   
Sbjct: 241 --LAVLFRV----LGGAAYPPARAALERLTPALRPATLGGV---RIMAAGRHGPGWLLVR 291

Query: 322 VRNLPTLILYPEETTVWDGRYQ----------FQNLSDSLIQIGPQSYRKADVPSGIPPI 371
                   +      VWDGR++             L DS  +IG +S     +   +P  
Sbjct: 292 EAAACAPPVAAVRGAVWDGRFRVCDVPPGARTIGALGDSAAEIGRRSGLPGALRRTLPAF 351

Query: 372 IAQRALSSMPSKEGG 386
                + S+P   GG
Sbjct: 352 FGGDGVLSVPHLAGG 366


>gi|91206209|ref|YP_538564.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C]
 gi|122425129|sp|Q1RGN9|TILS_RICBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|91069753|gb|ABE05475.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C]
          Length = 430

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 154/334 (46%), Gaps = 21/334 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ + ++   I+   +SVDH LR+ +K E+ Y+ +  + 
Sbjct: 20  SKIAIAVSGGSDSVALL-YLANIWAKKN--NIELFVLSVDHNLRDQSKQEIEYIQNTAND 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +    + + +    + L   AR+ RY L++   + ++  +++TAH  DD +E   +R 
Sbjct: 77  LGLKFYSLFFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDDYIENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+  S    ++ +  N  I RP     + ++ ++L   NI W ED SN   ++
Sbjct: 137 ERKSGVFGLSSS----SVNWHNNTQIIRPLFNIPKSELVNYLATNNIKWFEDQSNLSTKY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254
            R  +R   + +    +Y+K       ++KVN  +       L   +   + IS+     
Sbjct: 193 RRNTIR---QKLAKEEVYIKDDIITQ-QIKVNELIENKFKPELISAIAESVKISEYGFAF 248

Query: 255 -DILN---IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
            D++        +   L+     I  GQ     + S+E ++  ++       ++   VI 
Sbjct: 249 LDLIKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLDFKNTLHGCVIK 308

Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQ 343
           R  N L I R   + LP   L  ++  VWD R++
Sbjct: 309 RMQNKLLIYREFGKKLPESKLLLDKQLVWDNRFR 342


>gi|260576641|ref|ZP_05844628.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2]
 gi|259021126|gb|EEW24435.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2]
          Length = 422

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 105/209 (50%), Gaps = 14/209 (6%)

Query: 19  PAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           PA + +AVSGG DSM LL +A+ + L  R        A++VDH LR  +  E   V+  C
Sbjct: 30  PAVLGLAVSGGGDSMALLHLAVAAGLPCR--------AVTVDHGLRAESAAEAAGVARAC 81

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L + H  + W+    +  L   AR ARYALI+E A       +   H  DD  ET+ +
Sbjct: 82  AALAVPHDTLRWQGWDGRGNLQDQARRARYALIAEWALAHGIAAVALGHNRDDVAETLLL 141

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R       GL+ M     +    W+ RP L   R ++R +L  R + W +DPSN + 
Sbjct: 142 RLARGAGVD--GLAAMAARRRHQGVNWL-RPLLEIGRGELRDWLAGRGVVWVDDPSNDNA 198

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           RF+RVR+R+      L AL L  ++  ++
Sbjct: 199 RFDRVRLRQAAG--TLAALGLTTERLAEV 225


>gi|157827822|ref|YP_001496886.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389]
 gi|166988064|sp|A8GY99|TILS_RICB8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157803126|gb|ABV79849.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389]
          Length = 430

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 154/334 (46%), Gaps = 21/334 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ + ++   I+   +SVDH LR+ +K E+ Y+ +  + 
Sbjct: 20  SKIAIAVSGGSDSVALL-YLANIWAKKN--NIELFVLSVDHNLRDQSKQEIEYIQNTAND 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +    + + +    + L   AR+ RY L++   + ++  +++TAH  DD +E   +R 
Sbjct: 77  LGLKFYSLFFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDDYIENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+  S    ++ +  N  I RP     + ++ ++L   NI W ED SN   ++
Sbjct: 137 ERKSGVFGLSSS----SVNWHNNTQIIRPLFNIPKSELVNYLATNNIKWFEDQSNLSTKY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254
            R  +R   + +    +Y+K       ++KVN  +       L   +   + IS+     
Sbjct: 193 RRNTIR---QKLAKEEVYIKDDIITQ-QIKVNELIENKFKPELISAIAESVKISEYGFAF 248

Query: 255 -DILN---IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
            D++        +   L+     I  GQ     + S+E ++  ++       ++   VI 
Sbjct: 249 LDLIKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLDFKNTLHGCVIK 308

Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQ 343
           R  N L I R   + LP   L  ++  VWD R++
Sbjct: 309 RMQNKLLIYREFGKKLPESKLLLDKQLVWDNRFR 342


>gi|91762265|ref|ZP_01264230.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718067|gb|EAS84717.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002]
          Length = 351

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 109/220 (49%), Gaps = 28/220 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           F  SL    ++ VAVSGG DS+ L  L   +S+ +     KIK     VDH LR  +  E
Sbjct: 32  FSSSLNSEENLAVAVSGGPDSLALAYLAKCYSIKN-----KIKVKFFLVDHRLRNESTKE 86

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              V  +  ++ I   V+ WK  KP   + + AREARY+L+S+  K  N   ++  H  +
Sbjct: 87  ATLVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYSLLSKECKKNNIKYLLLGHHSN 146

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMC---DTILY-DLNLWISRPFLRCRREDIRSFLLQRN 185
           D +E   +R  R     G GL+G+     ++ Y D +L I RP L  ++ D+       N
Sbjct: 147 DLVENFLIRVVR-----GSGLNGLVSFNKSVKYKDEDLNILRPLLNLKKNDL------IN 195

Query: 186 IS------WCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           IS      + +DPSN ++ ++R R+R  +  ++   L LK
Sbjct: 196 ISKIVFKFFIKDPSNINEIYKRTRIRTLLESLEKEGLDLK 235


>gi|260429327|ref|ZP_05783304.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45]
 gi|260419950|gb|EEX13203.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45]
          Length = 445

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 160/397 (40%), Gaps = 45/397 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +P  I +AVSGG DSM +L   H+      +G ++   ++VDH LR  A  E   V D C
Sbjct: 21  FPLDIGLAVSGGGDSMAMLTLAHNWT--HRWG-VRLWVVTVDHGLRPEAAAEATLVRDTC 77

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L   H+ + W +   Q  LM AAR  R +LI      + A L   AHT DD  ET  M
Sbjct: 78  AELGWPHTTLRW-HWDGQGNLMDAARRGRLSLIGRWRGGLPAVLF--AHTRDDVAETFLM 134

Query: 138 RSQRDYAEKGMGLSGMC----------------DTILYDLNLWIS-------RPFLRCRR 174
           R  R       GLS M                 D    D    I+       RP L   R
Sbjct: 135 RLARGSGVD--GLSAMAPVREIRDAAPPAPLTEDECCGDRPPGIATDGFRVVRPCLDMGR 192

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
           E++R +L      W +DPSN D  ++R RVR+ + ++    L  +       R+      
Sbjct: 193 EELRHYLRVLKGRWVDDPSNEDPHYDRARVRKLLAELAPQGLGTETLAATAGRMSRAREA 252

Query: 235 AMLIPKYLTVHMRSIIAISQDIL-------NIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
                     H      ++ D++        +++     LL  +          P    +
Sbjct: 253 LRAR-AVAGWHSCGREGVAGDLILDRDAFAALEADTRMRLLAAALQYVSSAEYRPRAAQL 311

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
           E ++  L +G  G +    +  DR    + I R    +  L     E  +WDGR++  + 
Sbjct: 312 EALLDRLDAGAGGTLHGAELRCDR--AEIRIFREYAAVAGLRRAVTEGGLWDGRWRVSHP 369

Query: 348 SDSLIQI---GPQSYRK-ADVPSGIPPIIAQRALSSM 380
           + S ++I   G   +R+ A+  +G PP    RAL ++
Sbjct: 370 TPSGLEIRALGEDGWRQSAERRAGGPPHAVARALPAI 406


>gi|15603921|ref|NP_220436.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Madrid
           E]
 gi|6226316|sp|Q9ZEA3|TILS_RICPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3860612|emb|CAA14513.1| CELL CYCLE PROTEIN MESJ (mesJ) [Rickettsia prowazekii]
 gi|292571638|gb|ADE29553.1| tRNA(Ile)-lysidine synthetase [Rickettsia prowazekii Rp22]
          Length = 430

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 183/434 (42%), Gaps = 54/434 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ + ++   I+   ISVDH LR  +K E  Y+  + S 
Sbjct: 20  SKIAIAVSGGSDSISLL-YLANIWARKN--NIELFVISVDHNLRPQSKQENYYIHTISSN 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   +  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKYYNLSFDHQNNFSNLQERAREGRYDLMTNLCLELDVLVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     + ++  +L+   I W ED SN  D++
Sbjct: 137 ERNSGIFGLSSSN----IHWYNNIQIIRPLYNIPKSELVEYLVNHKIKWFEDESNLSDKY 192

Query: 200 ER--VRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            R  +R + F  +      Y+K +   Q L+         LI   L   + S IA +  I
Sbjct: 193 RRNIIRQKLFKEEN-----YIKAEISLQQLKTN------KLIEDELKPALISAIAEAVKI 241

Query: 257 LNIDSTLL------FYLLRVSAAICG-------GQISLPGYRSMERVMLFLKSGKRGCVS 303
                T L       +L  V A I         GQ     + S+  ++  +        +
Sbjct: 242 FEYGFTFLDLVKFDKFLNEVKAQIINFLLIMISGQSRSARFYSIAHILKLISQDINFKNT 301

Query: 304 IGRVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRY---QFQNLSDSLIQIGPQSY 359
           +   VI R  N L I R   + LP   +  +++ +WD R+   + Q   D +I     +Y
Sbjct: 302 VHGCVIKRIQNELLIYREFGKKLPKSKILLDKSVIWDNRFCITKNQKTPDCVI-----TY 356

Query: 360 RKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFS 409
                   I   +  + L ++  K     L   P  + + K         +D  V + F 
Sbjct: 357 LSLADYKAIKKQLDLKHLKNLSCKNHNAILFTLPIIKILEKVIAIPHISYYDNDV-WNFE 415

Query: 410 ISFGKVFIPRLPFF 423
           +SF   F+ R   F
Sbjct: 416 VSFAPNFVSRFTHF 429


>gi|90418979|ref|ZP_01226890.1| putative ATPase, PP-loop superfamily implicated in cell cycle
           control [Aurantimonas manganoxydans SI85-9A1]
 gi|90337059|gb|EAS50764.1| putative ATPase, PP-loop superfamily implicated in cell cycle
           control [Aurantimonas manganoxydans SI85-9A1]
          Length = 410

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 11/260 (4%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS+ L++A  ++    +  + +F   +VDH LR+ +  E RYV+ V +R RI+H 
Sbjct: 1   MSGGPDSLALVLAAIALQGTAALPQTRFHIATVDHGLRDASAAEARYVAGVAARFRISHE 60

Query: 86  VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145
            + W        + AAAREARYAL+S+ A+   AT+I+TAH  DDQ ET  M  +R    
Sbjct: 61  TLRWDAPARTGNIAAAAREARYALLSDAARRFGATVILTAHHEDDQCETHLMARERGAGV 120

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
             +GL+GM        +L ++RPFL    + +++ +    +    DP+N D    RV++R
Sbjct: 121 --VGLAGMRPVRSLASDLVLARPFLDVAGDRLKASVAAHRLPAVADPTNDDPASRRVQLR 178

Query: 206 RFVR--DIDLHALYLKMKKFQD----LRVKVNNAV-AMLIPKYLTVHMRSIIAISQDILN 258
           R +    +D  AL  ++   +     L   + +A+ AM     L +     + IS++ L 
Sbjct: 179 RQIAAGALDRDALRARIAGHRSERDALEAGLGDAIAAMQAAGELRLTDAGTLEISRNALR 238

Query: 259 --IDSTLLFYLLRVSAAICG 276
              D     +L R  AA+ G
Sbjct: 239 RLGDDAAFTFLQRAVAAVGG 258


>gi|158422151|ref|YP_001523443.1| cell cycle protein [Azorhizobium caulinodans ORS 571]
 gi|158329040|dbj|BAF86525.1| cell cycle protein [Azorhizobium caulinodans ORS 571]
          Length = 332

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 16/186 (8%)

Query: 26  VSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +SGG DS  +L+      + +L   SF    F A +VDH LR  A DE   V  +C  L 
Sbjct: 1   MSGGPDSTAMLVLARIWRYGLLDGPSF----FVA-TVDHGLRPEATDEALAVGALCEELG 55

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H ++ W+  KP++G+  AAR+ R+AL+   A+      +  AHT DDQ ETV  R  R
Sbjct: 56  LPHVILPWRGPKPRSGIQEAARDERFALLRSFARQNGLDGLALAHTQDDQAETVLFRLCR 115

Query: 142 DYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G G+ G+     +     L + RPFL   +  + + L      +  DPSN D R+
Sbjct: 116 -----GSGIGGLAAMRPVSRRNGLAVLRPFLSIAKARLVATLAVSGTPFVRDPSNEDTRY 170

Query: 200 ERVRVR 205
            R R+R
Sbjct: 171 ARPRLR 176


>gi|260431105|ref|ZP_05785076.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414933|gb|EEX08192.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 417

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 163/372 (43%), Gaps = 38/372 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ + VAVSGGSDS  LL  L S +++ +       A +VDH LR  +  E   V+ +C 
Sbjct: 21  PSRLGVAVSGGSDSTALL-HLMSRIAEGT--DTNLFAATVDHGLRPESAAEAAKVAALCW 77

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L I H ++ W        L   AR ARY L+ + A   +   I   HT DDQ ETV MR
Sbjct: 78  ELEIPHEILKWTGWDGTGNLQDQARRARYRLLRDWAHAQDIPAIALGHTADDQAETVLMR 137

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R  A    GLS M    ++D  + + RP L   R  +R +L+ + I W EDPSN + R
Sbjct: 138 LGR--AAGVTGLSAMPVVRMFD-GVALVRPLLFATRSQLRDYLVAQAIDWMEDPSNQNIR 194

Query: 199 FERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSII---- 250
           F+R++ R+ +  + +L      + +  +     N A+A       + LTV     I    
Sbjct: 195 FDRIKARQSLGQLAELGISAESLARVAENLGHANTALAQYTQETAQRLTVEQAGSIRLDC 254

Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
              S     +   ++  ++R    I GG    P   S++R +  + +G+    +IG   +
Sbjct: 255 AGFSGLPKELQRRIVIGIVRW---IAGGDYP-PRQASVDRTISAVSAGR--PTTIGGCAL 308

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
                F W  R +  +  L+  P     WD R+         I  GP      D+P    
Sbjct: 309 VPDGEFAWFCRELNPVTDLVTSP--GLQWDRRW---------IVSGP------DLPGAQV 351

Query: 370 PIIAQRALSSMP 381
             +A+R L  +P
Sbjct: 352 RALAERGLKQLP 363


>gi|51473299|ref|YP_067056.1| cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington]
 gi|61216485|sp|Q68XR8|TILS_RICTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51459611|gb|AAU03574.1| probable cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington]
          Length = 430

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 101/187 (54%), Gaps = 7/187 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LR  +K E  Y+  + + 
Sbjct: 20  SKIAIAVSGGSDSVALL-YLANIWAEKN--NIELFIISVDHNLRAQSKQENYYIQSISNN 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L+  +  +S+ +    + L A ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LKRKYYNLSFDHQNNFSNLQARAREGRYDLMTNLCLELDVLVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S     I +  N+ I RP     + ++  +L+   I W ED SN  D++
Sbjct: 137 ERNSGIFGLSSSN----IHWYNNIQIIRPLYNIPKSELVKYLVTNKIKWFEDESNLSDKY 192

Query: 200 ERVRVRR 206
            R  +R+
Sbjct: 193 RRNIIRQ 199


>gi|86139143|ref|ZP_01057713.1| PP-loop family protein [Roseobacter sp. MED193]
 gi|85823987|gb|EAQ44192.1| PP-loop family protein [Roseobacter sp. MED193]
          Length = 399

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 11/191 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA I +AVSGG DS+ L+  L     D     ++    +VDH LR  ++ E    + +  
Sbjct: 2   PARIGIAVSGGGDSVALMHLLKECFCDDP---VELMVATVDHGLRAESRQEAEDTARMAR 58

Query: 79  RLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            L + H +++W+    +TG L   AR ARY L++  A+     ++   HT DDQ ETV M
Sbjct: 59  ELGLRHEILTWEQGPEKTGNLQDQARRARYGLLTAWARQNGIPVLALGHTADDQAETVIM 118

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE--DIRSFLLQRNISWCEDPSNT 195
           R  R       G++G+    +      +S           ++R +L     SW EDPSN 
Sbjct: 119 RLMR-----ASGVNGLAGIPVRRTQDGVSLLRPLLGLRRVELRQYLDAAGQSWIEDPSNE 173

Query: 196 DDRFERVRVRR 206
           D+ ++R+++R+
Sbjct: 174 DESYDRIKIRK 184


>gi|103487083|ref|YP_616644.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977160|gb|ABF53311.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 284

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 10/156 (6%)

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEH 113
           A +VDH LR+ + DE R V+  C+R  I HS +  +   P  G L AAAR  RY L+ + 
Sbjct: 17  AATVDHGLRKGSDDEARMVAAFCAREHIPHSTL--RPPTPIRGSLQAAARTERYRLLEQW 74

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +      I+TAH  DDQLET+ MR  R       G+ G+    +   N  + RP L  R
Sbjct: 75  REAHALDHIVTAHHADDQLETIVMRLNR-----ASGVGGLA--AIRATNGAVLRPLLGWR 127

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
           R ++    L  ++ + +DPSN+DDRF+R R+R  +R
Sbjct: 128 RRELVDVALDNDLPFIDDPSNSDDRFDRARLRHALR 163


>gi|152980618|ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille]
 gi|151280695|gb|ABR89105.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille]
          Length = 462

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 100/200 (50%), Gaps = 21/200 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFG---KIKFSAISVDHCLRETAKDEVRYVSDV 76
           A I +A SGG DS  LL  LH+      +G   +I+  A  V H L   A D + +    
Sbjct: 24  AKIALAYSGGLDSAALLHLLHA------YGLAQQIEIFAFHVHHGLSPNADDWLAHCRAQ 77

Query: 77  CSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           C+ L +   A  V   +  K   G+  AAR++RYA + +  +     L++TAH  DDQ E
Sbjct: 78  CAALGVVFDARQVQVTRQGK--NGIEEAARQSRYAALGDMCRAHGVPLLLTAHHLDDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGM-----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           TV ++  R       GLSGM        +L D NL + RP L+ RRED+++++    I +
Sbjct: 136 TVLLQLLR--GSGVAGLSGMDSANHAADLLGDANLLMGRPLLQVRREDLQAYVTAHAIQF 193

Query: 189 CEDPSNTDDRFERVRVRRFV 208
            ED SN D R+ R  +R  V
Sbjct: 194 VEDESNLDPRYARNALRHQV 213


>gi|148258083|ref|YP_001242668.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1]
 gi|189035964|sp|A5ERG8|TILS_BRASB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|146410256|gb|ABQ38762.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1]
          Length = 358

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 5/203 (2%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+ R F         + +AVSGG DSM L+       + R+ G  +  A++VDH L
Sbjct: 12  ISAAEAERLFA-PFADSGVLTLAVSGGPDSMALMWLAARWRATRAGGP-RLLAVTVDHGL 69

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  ++ E   V  +  +L + H  + W   KP  G+  AAR ARY L++  A+   A+ +
Sbjct: 70  RPESRREALMVKQLARQLGLTHRTLRWSGEKPAAGIPEAARIARYRLLARAAEQAGASHV 129

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAHT DDQ ETV MR  R       GL+ M      D  L ++RP L   +  + + L 
Sbjct: 130 VTAHTRDDQAETVLMRLLRGSGIA--GLAAMAPVSRRD-GLLLARPLLSLSKARLLATLR 186

Query: 183 QRNISWCEDPSNTDDRFERVRVR 205
              I++ +DP+N D  F R R+R
Sbjct: 187 SAGIAFADDPTNRDPAFTRPRLR 209


>gi|115378573|ref|ZP_01465727.1| PP-loop family [Stigmatella aurantiaca DW4/3-1]
 gi|115364401|gb|EAU63482.1| PP-loop family [Stigmatella aurantiaca DW4/3-1]
          Length = 468

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 101/212 (47%), Gaps = 19/212 (8%)

Query: 5   PIESVRFFVRSL------VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           P  + R   R+L      V  AH  +L+AVSGG DS  LL  L + L     G I     
Sbjct: 20  PRRATRLICRTLEASFRSVGLAHRSVLLAVSGGVDSTALL--LGTALVRERLG-ILVEVA 76

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           ++DH LR  A +EVR V  + +R ++   V S  + K   GL   AREARYA +S+    
Sbjct: 77  TLDHGLRPEAMEEVRAVERLAARQKMICHVRSL-HVKEGPGLEVRAREARYAALSQLCSE 135

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                I TAHT  DQ ET+ MR  R  + +G        T +      + RP L   RE 
Sbjct: 136 RKLAAIATAHTASDQAETLLMRLARGTSLRGA-------TGITSARGVLVRPLLALTREQ 188

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           + +FL ++   +  DP N D RF R R+R  V
Sbjct: 189 VEAFLGEQEEGFAVDPMNADPRFLRARIRHHV 220


>gi|238759930|ref|ZP_04621084.1| tRNA(Ile)-lysidine synthase [Yersinia aldovae ATCC 35236]
 gi|238701837|gb|EEP94400.1| tRNA(Ile)-lysidine synthase [Yersinia aldovae ATCC 35236]
          Length = 445

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L +    ++K  AI + H L   A   V++    C + 
Sbjct: 18  HVLVGFSGGLDS-SVLLHLLVCLRELLIPELKVRAIHIHHGLNPLADSWVKHCQRQCEQW 76

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++   VV  K    Q G+ AAAR ARY   S H       +++TA   DDQ ET  +  +
Sbjct: 77  QVPLEVVRVKIDSRQNGVEAAARTARYQAFSSHMAA--DEVLLTAQHLDDQCETFLLALK 134

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLSGM  ++ +  +  + RP L   RE + ++   + +SW ED SN DDRF+
Sbjct: 135 RGSGPA--GLSGMAASLPFAHSQ-LLRPLLAFSREMLENYACAQQLSWIEDDSNQDDRFD 191

Query: 201 RVRVRRFVRDIDLHALYLKMKKF 223
               R F+R   L  LY +   F
Sbjct: 192 ----RNFLRLRVLPLLYQRWPHF 210


>gi|303326966|ref|ZP_07357408.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3]
 gi|302862954|gb|EFL85886.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3]
          Length = 366

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 99/205 (48%), Gaps = 14/205 (6%)

Query: 10  RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           RF++R L  P  A +++A+SGG+DS  L   LH +LS R   K+   A++V+H LR  A 
Sbjct: 23  RFYLRRLEIPRGARLVLALSGGADSTALACILH-ILSPRL--KLDLFALTVNHGLRPEAD 79

Query: 68  DEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            + R   D+C+ L I     H+ V+   S    GL  A R ARYAL+ E  +   A  ++
Sbjct: 80  ADARCARDLCALLGIPCVQRHADVTGLASDKGWGLEEAGRHARYALLEEERRARQADFVV 139

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  +D  E V +R  R     G G   +      D    + RP L  R + +R  L Q
Sbjct: 140 LGHHNEDLSEDVLLRLTR-----GTGWPALGGMAARDDTRRLLRPLLFTRPQALRELLRQ 194

Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208
             I W ED SN    F R R+R  V
Sbjct: 195 CGIVWREDASNDSPAFTRNRLRHNV 219


>gi|227533049|ref|ZP_03963098.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227189450|gb|EEI69517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 438

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM LL +A+ +         +     + DH LR  ++ E  +V     +L
Sbjct: 19  VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 71

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  DDQLET+  R  
Sbjct: 72  QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 131

Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R  +     L G+  D   +   L   RP L   +  IRS+  Q N+ +CED SN D  +
Sbjct: 132 R--SGDPAALIGIRADRTWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 187

Query: 200 ERVRVRRFV 208
            R ++R  V
Sbjct: 188 ARNQLRHQV 196


>gi|310821984|ref|YP_003954342.1| tRNA(ile)-lysidine synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309395056|gb|ADO72515.1| tRNA(Ile)-lysidine synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 101/212 (47%), Gaps = 19/212 (8%)

Query: 5   PIESVRFFVRSL------VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           P  + R   R+L      V  AH  +L+AVSGG DS  LL  L + L     G I     
Sbjct: 4   PRRATRLICRTLEASFRSVGLAHRSVLLAVSGGVDSTALL--LGTALVRERLG-ILVEVA 60

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           ++DH LR  A +EVR V  + +R ++   V S  + K   GL   AREARYA +S+    
Sbjct: 61  TLDHGLRPEAMEEVRAVERLAARQKMICHVRSL-HVKEGPGLEVRAREARYAALSQLCSE 119

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                I TAHT  DQ ET+ MR  R  + +G        T +      + RP L   RE 
Sbjct: 120 RKLAAIATAHTASDQAETLLMRLARGTSLRGA-------TGITSARGVLVRPLLALTREQ 172

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           + +FL ++   +  DP N D RF R R+R  V
Sbjct: 173 VEAFLGEQEEGFAVDPMNADPRFLRARIRHHV 204


>gi|254995320|ref|ZP_05277510.1| cell cycle protein (mesJ) [Anaplasma marginale str. Mississippi]
          Length = 501

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 11/190 (5%)

Query: 24  VAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           VAVSGG DS+ LL    ALH     ++    +   ++V+H  R  A  E R+V      L
Sbjct: 74  VAVSGGVDSITLLNLVAALH-----KTQATSRPVVLTVNHGFRAEADHETRFVQKRAVAL 128

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +   ++ W   +  +     ARE RY+L+ +     +   ++TAH   DQ ETV M  +
Sbjct: 129 GLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQAETVLMHLE 188

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLSGM +  ++  ++ I RP L   R++I  +  Q+ +SW EDPSN D ++ 
Sbjct: 189 RGSGID--GLSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDPSNQDPKYR 245

Query: 201 RVRVRRFVRD 210
           R   R  + +
Sbjct: 246 RTFFRNLIAE 255


>gi|222475515|ref|YP_002563932.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida]
 gi|255003502|ref|ZP_05278466.1| cell cycle protein (mesJ) [Anaplasma marginale str. Puerto Rico]
 gi|255004624|ref|ZP_05279425.1| cell cycle protein (mesJ) [Anaplasma marginale str. Virginia]
 gi|222419653|gb|ACM49676.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida]
          Length = 501

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 13/191 (6%)

Query: 24  VAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           VAVSGG DS+ LL    ALH     ++    +   ++V+H  R  A  E R+V      L
Sbjct: 74  VAVSGGVDSITLLNLVAALH-----KTQATSRPVVLTVNHGFRAEADHETRFVQKRAVAL 128

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +   ++ W   +  +     ARE RY+L+ +     +   ++TAH   DQ ETV M  +
Sbjct: 129 GLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQAETVLMHLE 188

Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R     G+ GLSGM +  ++  ++ I RP L   R++I  +  Q+ +SW EDPSN D ++
Sbjct: 189 RG---SGIDGLSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDPSNQDPKY 244

Query: 200 ERVRVRRFVRD 210
            R   R  + +
Sbjct: 245 RRTFFRNLIAE 255


>gi|242371661|ref|ZP_04817235.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           M23864:W1]
 gi|242350610|gb|EES42211.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           M23864:W1]
          Length = 432

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 23/230 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS- 78
           AH++VAVS G DSM LL   HS+L D      K + + V+H LR  + +E +++ D C  
Sbjct: 12  AHLVVAVSTGVDSMSLL---HSLLHDYHNTYRKLTCVHVNHGLRHQSVEEEQFLKDYCRA 68

Query: 79  ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
               L + H  +S    K  + +   AR+ RY    E  + I+A  ++TAH  DDQLET+
Sbjct: 69  HHIELYVKHLDLSQIVEKGNS-IQHEARQRRYDWFGEIIQKIDADALLTAHHLDDQLETI 127

Query: 136 YMR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           + R  S R      +G+S + +   Y     + RP L   +EDI ++     I + ED S
Sbjct: 128 FYRLLSGRS-TRSALGMSLISNYKHYR----VCRPLLEVSKEDILAYQHSNTIPYFEDDS 182

Query: 194 NTDDRFERVRVRRFV-----RD--IDLHALYLKMKKFQDLRVKVNNAVAM 236
           N D ++ R  +R+ +     R+  +D H L L++K + D  +++ N  A 
Sbjct: 183 NQDTKYVRNDIRQRILPTINRNPFLDTHHL-LRLKDWHDNELQLLNEYAQ 231


>gi|304321216|ref|YP_003854859.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis
           HTCC2503]
 gi|303300118|gb|ADM09717.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis
           HTCC2503]
          Length = 393

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTI 117
           +R ++++E   V+  C    + H+ ++W  S P       L AAAR+ARY L+ +  +  
Sbjct: 1   MRPSSREEADLVAAWCRARGLRHTTLTWARSDPARKGGGTLTAAARQARYKLLCQACEQH 60

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCR 173
               + TAHT DDQ ETV+MR +R     G G++GM    L        + + RP L  R
Sbjct: 61  GLDRVATAHTADDQAETVFMRLRRG---GGQGMAGMPRERLIAAGPGPAIRLLRPLLGVR 117

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
           R  +R++    ++ + +DPSN D R+ERVRVR  +  ++   L
Sbjct: 118 RARLRAYAKTHDLPFVDDPSNADPRYERVRVRALLGALEEQGL 160


>gi|187251952|ref|YP_001876434.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191]
 gi|186972112|gb|ACC99097.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191]
          Length = 241

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 9/188 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV VSGG+DS+ LL  L  +   + F   +  A  ++H LRE AK +  +   +C +L 
Sbjct: 28  VLVGVSGGADSVCLLHFLTQLAQKKRF---RVYACHINHSLRENAKKDELFTKKLCEQLG 84

Query: 82  IAHSVVSW--KNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V++   KN   K +  +  AAR+ARY+     AK INA  +  AH  DD +ET ++
Sbjct: 85  VELFVITKDVKNIALKNKLSIEHAARKARYSAFESAAKKINAGYLALAHHLDDNVETFFL 144

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    K  GL+G+      + N  I RP L  RR+D+ +++    + +  D +N+D+
Sbjct: 145 NILR--GTKAKGLTGIPRVRPLNKNTVIIRPLLNIRRQDVINYVKFNKLKFITDETNSDE 202

Query: 198 RFERVRVR 205
           ++ R  VR
Sbjct: 203 KYTRNWVR 210


>gi|301067523|ref|YP_003789546.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus casei str. Zhang]
 gi|300439930|gb|ADK19696.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei str.
           Zhang]
          Length = 436

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM LL +A+ +         +     + DH LR  ++ E  +V     +L
Sbjct: 17  VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 69

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  DDQLET+  R  
Sbjct: 70  QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 129

Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R  +     L G+  D   +   L   RP L   +  IRS+  Q N+ +CED SN D  +
Sbjct: 130 R--SGDPAALIGIRADRTWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 185

Query: 200 ERVRVRRFV 208
            R ++R  V
Sbjct: 186 ARNQLRHQV 194


>gi|296186909|ref|ZP_06855310.1| tRNA(Ile)-lysidine synthetase [Clostridium carboxidivorans P7]
 gi|296048623|gb|EFG88056.1| tRNA(Ile)-lysidine synthetase [Clostridium carboxidivorans P7]
          Length = 464

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 98/190 (51%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++VAVSGG DSM LL  L+S+   R    I+  A  V+HCLR  E+ KDE  YV + C +
Sbjct: 21  VIVAVSGGPDSMSLLHILYSL---RKQLNIELCAAHVNHCLRGNESDKDE-EYVKEFCEK 76

Query: 80  LRI---AHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I   + SV   K  K Q     +A R ARY   ++  K +NA  I  AH  +DQ ET+
Sbjct: 77  LNIEFRSKSVDINKIMKMQNISCESAGRNARYDFFNDLKKELNAQKIAIAHNANDQAETI 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        N+++ RP +   R +I  +  + NI+   D +N 
Sbjct: 137 LMRIMR-----GTGLEGLVGIKAVRDNIFV-RPLIDVTRHEIEEYCCKENINPRIDKTNL 190

Query: 196 DDRFERVRVR 205
           +  + R +VR
Sbjct: 191 ETIYSRNKVR 200


>gi|239630372|ref|ZP_04673403.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526655|gb|EEQ65656.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 436

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM LL +A+ +         +     + DH LR  ++ E  +V     +L
Sbjct: 17  VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 69

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  DDQLET+  R  
Sbjct: 70  QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 129

Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R  +     L G+  D   +   L   RP L   +  IRS+  Q N+ +CED SN D  +
Sbjct: 130 R--SGDPAALIGIRADRTWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 185

Query: 200 ERVRVRRFV 208
            R ++R  V
Sbjct: 186 ARNQLRHQV 194


>gi|191639452|ref|YP_001988618.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus
           casei BL23]
 gi|190713754|emb|CAQ67760.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus
           casei BL23]
 gi|327383544|gb|AEA55020.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei LC2W]
 gi|327386737|gb|AEA58211.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BD-II]
          Length = 436

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM LL +A+ +         +     + DH LR  ++ E  +V     +L
Sbjct: 17  VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 69

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  DDQLET+  R  
Sbjct: 70  QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 129

Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R  +     L G+  D   +   L   RP L   +  IRS+  Q N+ +CED SN D  +
Sbjct: 130 R--SGDPAALIGIRADRAWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 185

Query: 200 ERVRVRRFV 208
            R ++R  V
Sbjct: 186 ARNQLRHQV 194


>gi|325179733|emb|CCA14136.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 806

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 22/207 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           YP  + VA+SGG+DS+ L + L   L +         AI+VDH LR  +++E  YV  +C
Sbjct: 121 YP--LAVALSGGADSLTLTLLLDEYLRECEQKAASLLAITVDHQLRAESREEAEYVHKIC 178

Query: 78  SRLRIAHSVVS--WK--------NSKP-QTGLMAAAREARYALISEHAKTINATLIMTAH 126
               IAH + S  W         + KP ++ +   AR+ RY+ +    + ++   +   H
Sbjct: 179 EERGIAHVIASNDWSAFDSAQLVDGKPKKSQIQVQARKYRYSSLEHKCRKVSVKYLFVGH 238

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSF 180
           T DDQ ET+  R  R       GL+GM     +  N      +++ RP L   +  ++  
Sbjct: 239 TLDDQEETILYRLARGSGVN--GLAGMDPITKWFWNEEMGEHIYLIRPLLSVPKSRLQQT 296

Query: 181 LLQR-NISWCEDPSNTDDRFERVRVRR 206
            +QR +  W EDPSN  D F+RVR+R+
Sbjct: 297 CMQRFHQDWIEDPSNHSDTFDRVRIRK 323


>gi|225677084|ref|ZP_03788088.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590880|gb|EEH12103.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 422

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 147/348 (42%), Gaps = 35/348 (10%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-SAISVDHCLRETAKDEVRYV 73
           S  Y   + VAVSGG DS   ++ LH + +     K+   +A++V+H LR  ++ E  +V
Sbjct: 5   SAFYNNQVAVAVSGGVDS---IVLLHLMTNWAKKNKLSLPTALTVNHGLRPESQKEADFV 61

Query: 74  SDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 L    S +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ 
Sbjct: 62  VSYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQA 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ET  +R      E+G G+ G+   D   +   ++I RP L   R +I  +     + W E
Sbjct: 122 ETFLLR-----LERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWVE 176

Query: 191 DPSNTDDRFERVRVRRFVRDID----------LHALYLKMKK---FQDLRVKVNNAVAML 237
           D SN D ++ R   R  ++  D          L AL++K          R+  N+ V + 
Sbjct: 177 DRSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVH 236

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLK 295
              Y+ + +     + ++I          LL  S      +   P Y S+  +   +  K
Sbjct: 237 DLGYIEIKLSEFYQLPEEI-------ALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQK 289

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRY 342
                C   G  +     N L I  + +    TL L   E+T WD R+
Sbjct: 290 DSNVNCTLSGCKIRKHGENILIIRESSKIQEITLNLPLNESTQWDNRF 337


>gi|254460357|ref|ZP_05073773.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206676946|gb|EDZ41433.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 389

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/197 (35%), Positives = 102/197 (51%), Gaps = 15/197 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + +A+SGGSDS  LL     VL+  +FG     AI++DH LR  A+ E R  + +C+ 
Sbjct: 11  APLGIALSGGSDSTALL-----VLAVDAFGAENLQAITIDHGLRAAAQAEARQAAKLCAS 65

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT-INA-TLIMTAHTFDDQLETVYM 137
           L + H++ +    K    L A AR ARY  + + A+  +N+   I   HT DD  ET  M
Sbjct: 66  LGVPHTIRTLA-LKDGPDLQARARNARYMALGDWARAQLNSIPAIALGHTKDDVSETFLM 124

Query: 138 RSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           R  R     G G+ G+     Y     +   RP L   R ++ + L +R I+W EDPSN 
Sbjct: 125 RLAR-----GSGVDGLATMPEYFERAGMVFKRPLLAASRAELHAMLTKRGITWSEDPSNQ 179

Query: 196 DDRFERVRVRRFVRDID 212
           D RF RV++R+    +D
Sbjct: 180 DPRFTRVKMRQAQATLD 196


>gi|304570552|ref|YP_266024.2| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062]
          Length = 346

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 111/231 (48%), Gaps = 33/231 (14%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           F  SL    ++ VAVSGG DS+ L  L   +S+ +     KIK     VDH LR  +  E
Sbjct: 27  FSSSLNSEENLAVAVSGGPDSLALAYLAKCYSIKN-----KIKVKFFLVDHRLRNESTKE 81

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              V  +  ++ I   V+ WK  KP   + + AREARY+L+S+  K  N   ++  H  +
Sbjct: 82  ATLVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYSLLSKECKKNNIKYLLLGHHSN 141

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMC---DTILY-DLNLWISRPFLRCRREDIRSFLLQRN 185
           D +E   +R  R     G GL+G+     ++ Y D +L I RP L   + D+       N
Sbjct: 142 DLVENFLIRVVR-----GSGLNGLVSFNKSVKYKDEDLNILRPLLNLEKNDL------IN 190

Query: 186 IS------WCEDPSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQD 225
           IS      + +DPSN ++ ++R R+R  +       +DL  L L +   +D
Sbjct: 191 ISKIVFKFFIKDPSNINEIYKRTRIRTLLEFLAKEGLDLKKLKLTIDNLRD 241


>gi|145634599|ref|ZP_01790308.1| pyridoxine kinase [Haemophilus influenzae PittAA]
 gi|145268144|gb|EDK08139.1| pyridoxine kinase [Haemophilus influenzae PittAA]
          Length = 430

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 155/341 (45%), Gaps = 32/341 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  D+C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +   +  L+ ++  I RP L   R ++  ++ Q N+SW ED SN D+RF+
Sbjct: 136 RGSGLQGLG-AMQKEGQLFGMS--ILRPLLSFTRNELEDYIQQENLSWVEDESNGDNRFD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +    A    I N  
Sbjct: 193 ----RNFLRNEILPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
           R  + L++T+   +L    L  E+ T+        NL D+L
Sbjct: 308 RYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDNL 340


>gi|116495973|ref|YP_807707.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334]
 gi|116106123|gb|ABJ71265.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334]
          Length = 436

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 13/189 (6%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM LL +A+ +         +     + DH LR  ++ E  +V     +L
Sbjct: 17  VLVAVSGGVDSMVLLNLAVKA-------ADLDVVVATFDHRLRPESQQEQAFVVAAAQQL 69

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  DDQLET+  R  
Sbjct: 70  QVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHADDQLETILFRLA 129

Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R  +     L G+  D   +   L   RP L   +  IRS+  Q N+ +CED SN D  +
Sbjct: 130 R--SGDPAALIGIRADRAWHGRRL--VRPLLPYSKAMIRSYADQHNVRFCEDSSNADPHY 185

Query: 200 ERVRVRRFV 208
            R ++R  V
Sbjct: 186 ARNQLRHQV 194


>gi|332685802|ref|YP_004455576.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311]
 gi|332369811|dbj|BAK20767.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311]
          Length = 465

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 9/186 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DSM LL   H +   +    I F+   V+H +RE + +E  YV   C +  
Sbjct: 21  LLLAISGGVDSMVLL---HLIEQLQKKIPIDFAVAHVNHKIREESIEEAAYVCTYCKQKN 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I +   SW+ +K +  + A AR+ RY+  +   K    T ++TAH  DDQ ET+ M+  R
Sbjct: 78  IPYYETSWEEAKDK-NIEARARKFRYSFFANLMKQERYTHLLTAHHLDDQAETMLMKMVR 136

Query: 142 DYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               K + G+    D  +  L     RPFL   +E IR++ + + I + ED +N  D + 
Sbjct: 137 GTTLKNLAGIQLQQDFSIGKL----VRPFLIFSKEQIRNYAIDKKIMYFEDNTNYSDSYA 192

Query: 201 RVRVRR 206
           R R+R 
Sbjct: 193 RNRMRH 198


>gi|320105913|ref|YP_004181503.1| tRNA(Ile)-lysidine synthetase [Terriglobus saanensis SP1PR4]
 gi|319924434|gb|ADV81509.1| tRNA(Ile)-lysidine synthetase [Terriglobus saanensis SP1PR4]
          Length = 358

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 99/218 (45%), Gaps = 21/218 (9%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-Y 72
           SL  P   I VA S G+DS  LL+ALH     R    I  SA+ + H  R    D  R +
Sbjct: 15  SLFRPGDRIAVAASAGADSTSLLLALHE---QRVALGIGLSAVHLHHGTRGAESDRDRDF 71

Query: 73  VSDVCSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V  +C+RL    R+A S +          L  AAR AR  L          T++ TAHT 
Sbjct: 72  VQALCARLDVPLRLAESDIPAAAEADGETLEEAARNARLELFRTLMLGGEVTMVATAHTQ 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNI 186
           DDQ ETV  +  R    +G  LSG+   +       L + RP L   R  + +FL  R  
Sbjct: 132 DDQAETVLAKLLRGAWTEG--LSGIHPILFLGEGERLPVIRPMLHLSRVQVEAFLEARGE 189

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
           +WCED SNT  +  R R+R        H L  KM++F 
Sbjct: 190 AWCEDSSNTSTKHMRNRIR--------HDLMPKMREFN 219


>gi|70727501|ref|YP_254417.1| hypothetical protein SH2502 [Staphylococcus haemolyticus JCSC1435]
 gi|68448227|dbj|BAE05811.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 431

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 117/221 (52%), Gaps = 21/221 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI++AVS G DSM L    H++LS  S    + + + V+H LRE +  E  ++   C + 
Sbjct: 14  HIVIAVSTGVDSMSLF---HNLLSQSSRTYKQLTCLHVNHGLREASHKEEAFIEAFCKQY 70

Query: 81  RIAHSV--VSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            I   V  ++  +   Q   + A AR+ RY    E  K ++A +++TAH  DDQLET++ 
Sbjct: 71  EITCYVKHLNLTDVVAQGKSIQADARQLRYEWFDEMMKRLDADVLLTAHHLDDQLETIFY 130

Query: 138 R---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           R    +   +  G+ +  + +      +  I RP L   +EDIR +  +  + + ED SN
Sbjct: 131 RLFTGRSTRSTLGIDVQSIRN------HYTICRPLLEVSKEDIRDYQHKYQVPYYEDSSN 184

Query: 195 TDDRFERVRVRRFV-----RDIDLHALY-LKMKKFQDLRVK 229
           +D+++ R  +R  +     ++ DL + + LK+K++ D++++
Sbjct: 185 SDNKYVRNDIRNRLLPAINQNADLDSTHLLKLKRWHDIQLQ 225


>gi|224475652|ref|YP_002633258.1| putative PP-loop family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420259|emb|CAL27073.1| putative PP-loop family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 426

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 17/219 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+ +AVS G DSM LL  L    ++ +    K + + V+H +RE +K+E +++ D C + 
Sbjct: 13  HLAIAVSTGVDSMVLLDVL---TTEFAHTYQKLTVLHVNHGIREASKEEEQFIRDYCEKH 69

Query: 81  RI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +I    H +   + +     +   ARE RY     H KTI A +++TAH  DDQLET++ 
Sbjct: 70  QIPLAVHHLDLSELTAQGKSIQHTAREQRYDWFETHMKTIGANVLVTAHHQDDQLETIFY 129

Query: 138 RSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R     + +  +G+S       + L     RP L   +  IR + +   + + ED SNTD
Sbjct: 130 RIMTGRSTRSPLGMSVQETRPGFKL----VRPLLNVTKRVIRQYQVTNEVPYYEDASNTD 185

Query: 197 DRFERVRVR-RFVRDIDLH-----ALYLKMKKFQDLRVK 229
           + + R  +R R + +ID +     +  LK+K++ D + +
Sbjct: 186 NHYVRNDIRNRILPEIDENPQLDVSQLLKLKQWHDAQFQ 224


>gi|225445226|ref|XP_002280934.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 687

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 124/274 (45%), Gaps = 42/274 (15%)

Query: 19  PAH-ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           P H I + VSGG DSM L I         L++    R F      AI VDH LR  +KDE
Sbjct: 80  PHHRIALGVSGGPDSMALCILTADWKTNGLNTAGESRGFID-GLLAIIVDHGLRAESKDE 138

Query: 70  ---VRY-VSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMT 124
              VR+ VSD+  R  IA     W + KP+ G L  AARE RY +           +++ 
Sbjct: 139 ANIVRHRVSDMGIRCEIAQ--CDWLDGKPKQGHLQEAAREMRYQIFQNVCIQHQIGVLLV 196

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC-------------DTILYDLNLWISRPFLR 171
           AH  DDQ+E   +R  RD     +GL+GM              D    + ++ + RP L 
Sbjct: 197 AHHADDQVELFILRLSRDSGV--LGLAGMAFASQLFSTYTNYFDEASDNYSILLVRPLLE 254

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQ 224
             +ED+       N  W EDP+N +  F R R+R  +R++       +L A+    +K  
Sbjct: 255 FSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLPSCTFKYELQAVISACRK-- 312

Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             R  V+   + LI + ++V  +    I  +IL+
Sbjct: 313 -TRAYVDQICSNLINEVVSVMAQGYAVIDLEILH 345


>gi|297738821|emb|CBI28066.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 124/274 (45%), Gaps = 42/274 (15%)

Query: 19  PAH-ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           P H I + VSGG DSM L I         L++    R F      AI VDH LR  +KDE
Sbjct: 80  PHHRIALGVSGGPDSMALCILTADWKTNGLNTAGESRGFID-GLLAIIVDHGLRAESKDE 138

Query: 70  ---VRY-VSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMT 124
              VR+ VSD+  R  IA     W + KP+ G L  AARE RY +           +++ 
Sbjct: 139 ANIVRHRVSDMGIRCEIAQ--CDWLDGKPKQGHLQEAAREMRYQIFQNVCIQHQIGVLLV 196

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC-------------DTILYDLNLWISRPFLR 171
           AH  DDQ+E   +R  RD     +GL+GM              D    + ++ + RP L 
Sbjct: 197 AHHADDQVELFILRLSRDSGV--LGLAGMAFASQLFSTYTNYFDEASDNYSILLVRPLLE 254

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQ 224
             +ED+       N  W EDP+N +  F R R+R  +R++       +L A+    +K  
Sbjct: 255 FSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLPSCTFKYELQAVISACRK-- 312

Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             R  V+   + LI + ++V  +    I  +IL+
Sbjct: 313 -TRAYVDQICSNLINEVVSVMAQGYAVIDLEILH 345


>gi|15806226|ref|NP_294931.1| cell cycle protein MesJ /cytosine deaminase-like protein
           [Deinococcus radiodurans R1]
 gi|84039866|gb|AAF10777.2|AE001969_6 cell cycle protein MesJ, putative/cytosine deaminase-related
           protein [Deinococcus radiodurans R1]
          Length = 600

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 95/192 (49%), Gaps = 20/192 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +LV VSGG+DS+GLL AL +V      G +   A  +DH LR  + D+  +VSD+C+RL
Sbjct: 57  QVLVGVSGGADSVGLLRALLAV------GALPAVA-HLDHALRPESVDDAAWVSDLCARL 109

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V    V    ++    L  AAR  RY ++S  AK   A +I+TAHT  DQ ETV 
Sbjct: 110 GVPCEVTRIDVGAVAARRNWNLEBAARRLRYDVLSRAAKHSGAEVILTAHTRRDQAETVL 169

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   R          G    I       + RP+L   R +I ++L      W ED SN D
Sbjct: 170 MELLRG--------EGRIRGIPPQRGR-VRRPWLNVGRAEIETYLRGLGQDWREDASNAD 220

Query: 197 DRFERVRVRRFV 208
            RF R  +RR V
Sbjct: 221 PRFTRAWLRREV 232


>gi|332307488|ref|YP_004435339.1| tRNA(Ile)-lysidine synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174817|gb|AEE24071.1| tRNA(Ile)-lysidine synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 466

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 104/206 (50%), Gaps = 22/206 (10%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRY 72
           SL+   H +VA S G DS    + LH++   +   K  F  SAI + H L E A    ++
Sbjct: 17  SLLPSRHFVVAYSAGIDSH---VLLHALWRLQQVKKTPFTLSAIYIHHGLSENADLWQQH 73

Query: 73  VSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            +DVC  L I    A   + + N K   G+ A AREARYA + E A T   ++IM A   
Sbjct: 74  CADVCDALNIEFASAKVTLDFSNGK---GIEAQAREARYAKLVEMAPT--DSVIMLAQHQ 128

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD------LNLWISRPFLRCRREDIRSFLL 182
           DDQLETV ++ +R    KG  LSGM      D       N+   RP L   ++ I+ +  
Sbjct: 129 DDQLETVLLQLKRGAGPKG--LSGMGTYFTSDKLGASQQNVHFFRPLLDISQQQIQHYAK 186

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208
           ++++ W ED SN +  FER  +RR V
Sbjct: 187 EQSLVWQEDESNQNTDFERNFIRRDV 212


>gi|311070714|ref|YP_003975637.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942]
 gi|310871231|gb|ADP34706.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942]
          Length = 472

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/195 (34%), Positives = 94/195 (48%), Gaps = 14/195 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDE-VRYVSDVC 77
           A I+V VSGG DSM LL  LH+      FG+     A  VDH  R  A +E +R+V   C
Sbjct: 18  ATIIVGVSGGPDSMALLNFLHT-----RFGRASVIIAAHVDHSFRGAASEEDMRFVQAYC 72

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              RI    V    S      +    AAARE RY    +      A  +  AH  DDQ+E
Sbjct: 73  KTERITCETVKMDVSAYAEMNRLNKQAAARECRYRFFKDLMVKHQADYLALAHHGDDQVE 132

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  +     G GL+G+     ++   W+ RPFL   +ED+ ++ L+ ++ +  D S
Sbjct: 133 TMLMRLAK--GTLGAGLAGIQPVRKFETG-WLIRPFLSITKEDVLTYCLEHDVRYRTDES 189

Query: 194 NTDDRFERVRVRRFV 208
           N  D + R R R+ V
Sbjct: 190 NAKDDYTRNRFRKAV 204


>gi|58698494|ref|ZP_00373399.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630913|ref|YP_002727704.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
 gi|254764825|sp|C0R4S1|TILS_WOLWR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|58534988|gb|EAL59082.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592894|gb|ACN95913.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
          Length = 431

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 35/345 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-SAISVDHCLRETAKDEVRYVSDV 76
           Y   + VAVSGG DS   ++ LH + +     K+   +A++V+H LR  ++ E  +V   
Sbjct: 17  YNNQVAVAVSGGVDS---IVLLHLMTNWAKKNKLSLPTALTVNHGLRPESQKEADFVVSY 73

Query: 77  CSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              L    S +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ ET 
Sbjct: 74  AKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETF 133

Query: 136 YMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +R      E+G G+ G+   D   +   ++I RP L   R +I  +     + W ED S
Sbjct: 134 LLR-----LERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRS 188

Query: 194 NTDDRFERVRVRRFVRDID----------LHALYLKMKK---FQDLRVKVNNAVAMLIPK 240
           N D ++ R   R  ++  D          L AL++K          R+  N+ V +    
Sbjct: 189 NYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLG 248

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGK 298
           Y+ + +     + ++I          LL  S      +   P Y S+  +   +  K   
Sbjct: 249 YIEIKLSEFYQLPEEI-------ALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKDSN 301

Query: 299 RGCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRY 342
             C   G  +     N L I  + +    TL L   E T WD R+
Sbjct: 302 VNCTLSGCKIRKHGENILIIRESSKIQEITLNLPLNEPTQWDNRF 346


>gi|228476217|ref|ZP_04060920.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis SK119]
 gi|228269702|gb|EEK11201.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis SK119]
          Length = 433

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 124/243 (51%), Gaps = 26/243 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+ VAVS G DSM LL  L   L+D S+     + + V+H LR+ + +E R++   C + 
Sbjct: 13  HLAVAVSTGIDSMCLLYKL---LNDLSYSYQSITCLHVNHGLRDASVEEERFIKQFCKQY 69

Query: 81  RIAHSVVSWKNSKP-QTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +I   V     S+  + G  + + AR+ RY    E    INA +++TAH  +DQLET++ 
Sbjct: 70  QIPCYVKQLDLSETVEKGKSIQSEARDLRYQWFDEMMSKINADVLLTAHHLNDQLETIFY 129

Query: 138 -----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
                RS R+     +G+    +   Y    +I RP +   + DI+ +    ++ + ED 
Sbjct: 130 RVFTGRSTRN----SLGMHECTERNHY----FICRPLIETYKNDIKQYQTIHHVPFYEDE 181

Query: 193 SNTDDRFERVRVR-RFVRDIDLHALY-----LKMKKFQDLRVKVNNA-VAMLIPKYLTVH 245
           SN  +++ R  +R R +  ID +  +     LK+K + D+++++    ++  I +Y+ ++
Sbjct: 182 SNHHNKYARNDIRNRLLPAIDENKDFKVEQLLKLKHWHDMQLQLTQQRISCFIEQYVNIY 241

Query: 246 MRS 248
           +  
Sbjct: 242 LNE 244


>gi|310816574|ref|YP_003964538.1| Probable cell cycle protein [Ketogulonicigenium vulgare Y25]
 gi|308755309|gb|ADO43238.1| Probable cell cycle protein [Ketogulonicigenium vulgare Y25]
          Length = 407

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 98/204 (48%), Gaps = 11/204 (5%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           P    R FV  +     I VAVSGGSDS+  L+ LH     R +      A +VDH LR 
Sbjct: 8   PRAIARAFVTQVT--GRIGVAVSGGSDSLAALLLLHEAAPGRIW------AATVDHNLRA 59

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +  E   V   C+   IAH  + W+ +     L   AR ARY+L+S  A+      ++ 
Sbjct: 60  DSAAEAEMVQRFCAARDIAHYTLPWQPADMAGNLPHRARIARYSLLSTWAREAFLAGVVI 119

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  +DQ ET  M   R       GLS M D    +  +   RPF+   R+ +R  L   
Sbjct: 120 AHNREDQAETYLMNLGRSAGID--GLSAMRDRWRVE-GVPFYRPFMALSRKALRDVLRAG 176

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
            ISW +DP+N D  ++RVR+RR +
Sbjct: 177 AISWVDDPTNDDPHYQRVRLRRLL 200


>gi|260914165|ref|ZP_05920638.1| tRNA(Ile)-lysidine synthetase [Pasteurella dagmatis ATCC 43325]
 gi|260631798|gb|EEX49976.1| tRNA(Ile)-lysidine synthetase [Pasteurella dagmatis ATCC 43325]
          Length = 435

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 138/322 (42%), Gaps = 32/322 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             L+  SGG DS  LL+    +  +R    ++  AI + H L   A     +   +C +L
Sbjct: 19  QFLIGFSGGLDSTALLLLFTKLRENRP--HLQMRAIHIHHGLSANADSWTEHCKQICEQL 76

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +   ++         G+ A AREARY  IS+H   +   ++ TAH   DQ ET ++  +
Sbjct: 77  NVP-LIIEKVRVDTCNGIEAGAREARYQAISQH--ILPDEILATAHHLQDQTETFFLALK 133

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G   +  T+    NL + RP L   R ++  F+    + W ED SN D+R+E
Sbjct: 134 RGSGLQGLGAMQLQSTVY---NLPVFRPLLHFTRPELEQFVQATKLDWVEDESNRDNRYE 190

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK------------VNNAVAMLIPKYLTVHMRS 248
               R F+R+  L  L  +   F DL V+            +N  +A    +      RS
Sbjct: 191 ----RNFLRNEILPELRQRWAHF-DLAVQRSAQHCFEQQQLINELLADEFAQNFDKTDRS 245

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305
                Q      +T    LLR+   +   Q+ +P    +E+++   +F +S       +G
Sbjct: 246 FSI--QQFAQYSATKQKALLRL--WLNEWQLPMPSLVQLEQIIQDVIFARSDSNPLFQLG 301

Query: 306 RVVIDRRANFLWITRAVRNLPT 327
             V+ R    L++T    ++ T
Sbjct: 302 EKVVRRHQQKLYLTPQFTDIST 323


>gi|253996656|ref|YP_003048720.1| tRNA(Ile)-lysidine synthetase [Methylotenera mobilis JLW8]
 gi|253983335|gb|ACT48193.1| tRNA(Ile)-lysidine synthetase [Methylotenera mobilis JLW8]
          Length = 500

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 9/212 (4%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F +P  +    + +L  P  +L+A+SGG DS    + LH +   RS    +  A+ V H
Sbjct: 58  LFPNPHLTPDTGLPALAAPPRLLLALSGGLDSA---VLLHLLAGLRSSLGFELYALHVHH 114

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA 119
            L   A     +    C  L++  S+   K N     G+ AAAR  RY  + +  + + A
Sbjct: 115 GLSPNADAWAAWCEQQCQLLQVPISISRVKVNQASGLGIEAAARLLRYQALFDARQALEA 174

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++TAH  DDQ ET+ ++  R     G G+ G+      D    + RP L   R+ + +
Sbjct: 175 DFVVTAHHQDDQAETLLLQLFR-----GSGVKGLSSMAAVDHTRSLMRPLLGVSRQSLHA 229

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
           + +Q  ++WC+D SN + R+ER  +R  V  I
Sbjct: 230 YAIQHALTWCDDESNDNTRYERNFIRHDVMPI 261


>gi|199598787|ref|ZP_03212199.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus HN001]
 gi|199590292|gb|EDY98386.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus HN001]
          Length = 435

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 23/194 (11%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM LL +A+ +         +     + DH LR  ++ E  +V    +R 
Sbjct: 17  VLVAVSGGVDSMVLLDLAVRA-------PNLDVVVATFDHRLRPESRQEQAFVVAAAARY 69

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +     +W+ S       AAAR+ARY  ++  A +  AT+IMTAH  DDQLETV  R  
Sbjct: 70  HVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLFR-- 127

Query: 141 RDYAEKGMGLSGMCDTI--LYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                  +G SG    +  ++    W    + RP L   ++DIR++  +  + +C+DPSN
Sbjct: 128 -------LGRSGDPAALVGIHPDQPWRKKRLVRPLLNFSKDDIRAYAGRHGLDFCDDPSN 180

Query: 195 TDDRFERVRVRRFV 208
            D R+ R ++R  V
Sbjct: 181 ADTRYARNQLRHQV 194


>gi|258509511|ref|YP_003172262.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus GG]
 gi|257149438|emb|CAR88411.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus GG]
 gi|259650779|dbj|BAI42941.1| tRNA(Ile)-lysidine synthetase [Lactobacillus rhamnosus GG]
          Length = 435

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 23/194 (11%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM LL +A+ +         +     + DH LR  ++ E  +V    +R 
Sbjct: 17  VLVAVSGGVDSMVLLDLAVRA-------PNLDVVVATFDHRLRPESRQEQAFVVAAAARY 69

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +     +W+ S       AAAR+ARY  ++  A +  AT+IMTAH  DDQLETV  R  
Sbjct: 70  HVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLFR-- 127

Query: 141 RDYAEKGMGLSGMCDTI--LYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                  +G SG    +  ++    W    + RP L   ++DIR++  +  + +C+DPSN
Sbjct: 128 -------LGRSGDPAALVGIHPDQPWRKKRLVRPLLNFSKDDIRAYANRHGLDFCDDPSN 180

Query: 195 TDDRFERVRVRRFV 208
            D R+ R ++R  V
Sbjct: 181 ADTRYARNQLRHQV 194


>gi|61216416|sp|Q5P9R1|TILS_ANAMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 466

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 13/191 (6%)

Query: 24  VAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           VAVSGG DS+ LL    ALH     ++    +   ++ +H  R  A  E R+V      L
Sbjct: 39  VAVSGGVDSITLLNLVAALH-----KTQATSRPVVLTGNHGFRAEADHETRFVQKRAVAL 93

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +   ++ W   +  +     ARE RY+L+ +     +   ++TAH   DQ ETV M  +
Sbjct: 94  GLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQAETVLMHLE 153

Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R     G+ GLSGM +  ++  ++ I RP L   R++I  +  Q+ +SW EDPSN D ++
Sbjct: 154 RG---SGIDGLSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDPSNQDPKY 209

Query: 200 ERVRVRRFVRD 210
            R   R  + +
Sbjct: 210 RRTFFRNLIAE 220


>gi|32491148|ref|NP_871402.1| hypothetical protein WGLp399 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|61217353|sp|Q8D2F5|TILS_WIGBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|25166355|dbj|BAC24545.1| mesJ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 400

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 111/202 (54%), Gaps = 15/202 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL----IALHSVLSDRSFGK--IKFSAISVDHCLRET 65
           F + + Y    ++A SGG DS  LL    + +  + ++ +F K   KF A+ ++H + + 
Sbjct: 5   FFKEISYKKSYVLAFSGGLDSTVLLHMISLYIKKIKNNNNFFKKIFKFRAVYINHNICKE 64

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTIN-ATLIM 123
           +K    +  D C + ++    ++   S    G+ ++AR  RY AL S+    +N   +++
Sbjct: 65  SKYWSNHCHDQCLKYKVFFKSINIFISDFSEGIESSARRERYKALFSD----LNPEEVLI 120

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DDQ+ET+ +  +R    +G  +SGM     +D ++ I RP L C++EDI+ + ++
Sbjct: 121 TAHHQDDQIETILLSLKRGSGPRG--ISGMQSIKKFDSHI-IKRPLLHCKKEDIKLYAIK 177

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
            N++W +D SN + +F+R  +R
Sbjct: 178 HNLNWIDDKSNLNIKFDRNFLR 199


>gi|167856269|ref|ZP_02479001.1| tRNA(Ile)-lysidine synthase [Haemophilus parasuis 29755]
 gi|167852593|gb|EDS23875.1| tRNA(Ile)-lysidine synthase [Haemophilus parasuis 29755]
          Length = 422

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 135/307 (43%), Gaps = 25/307 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            + +SGG DS    + LH     R    +K  AI + H L   A     +   +C +  I
Sbjct: 20  FIGLSGGVDSA---VLLHLFAQARQALNLKLRAIHIHHGLNPNADSWATFCEQLCEQWAI 76

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
             +V   +    Q GL A AR ARY  I +H +     ++ TAH  DDQ+ET ++  +R 
Sbjct: 77  PFTVCKVQVQGKQ-GLEANARTARYQAIQQHIQ--RNEMLATAHHLDDQVETFFLALKRG 133

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +G+G       + +  N+ I RP L   + DI ++  Q  + W ED SN +  F+  
Sbjct: 134 SGIQGLG---AMQAVSFLQNIAIFRPLLSFNKTDILAYAEQHQLEWIEDESNFNTDFD-- 188

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDILNI 259
             R F+R   L  L  + ++F  +  + +   A    LI + L   + S   +    L+I
Sbjct: 189 --RNFLRQTALPLLNQRWQQFNQMVARSSQHCAEQQQLIEELLHPELAS--RLQNGGLDI 244

Query: 260 DSTLLFYLLR----VSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRR 312
                F LL+    V   +    +++P    +E+++  L   K+ K   V + + +I R 
Sbjct: 245 TGFEHFSLLKQQQLVRLWLAQAHLAMPSVAQLEQIIQHLILAKADKNPQVKLEQHLIRRY 304

Query: 313 ANFLWIT 319
              ++IT
Sbjct: 305 QQQIFIT 311


>gi|254455258|ref|ZP_05068687.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082260|gb|EDZ59686.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211]
          Length = 299

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 18/199 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DS+ L   L  + S +    +K+    VDH LR  +  E + V  +     I 
Sbjct: 1   MAVSGGPDSLALSF-LTKIYSLKKSLDVKY--FLVDHRLRINSTIEAKSVQKLLKNFYIN 57

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
            ++++WK SKP+  + + +R+ RY L+ + A       I+  H  DD  E  ++R  R  
Sbjct: 58  LNILTWKGSKPEKNIQSISRDKRYKLLIKKANKFRIKNILLGHHLDDLFENFFIRILR-- 115

Query: 144 AEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNI--SWCEDPSNTDD 197
              G GL+G+     +T    +NL   RP L   + D+    L + +  S+  DPSN +D
Sbjct: 116 ---GSGLNGLVSLDRETQRDTVNLI--RPLLEINKNDL--VYLSKYVFGSYVNDPSNEND 168

Query: 198 RFERVRVRRFVRDIDLHAL 216
           +F+RV+VR F+  + L  L
Sbjct: 169 KFKRVKVRNFINQLGLEGL 187


>gi|163796933|ref|ZP_02190889.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [alpha proteobacterium BAL199]
 gi|159177680|gb|EDP62231.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [alpha proteobacterium BAL199]
          Length = 426

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 3/152 (1%)

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           +VDH LR  A  E   V  VC+     H ++ W  +KP +GL AAAR ARY L+++  + 
Sbjct: 22  TVDHGLRPEAVVEAGRVGQVCAMAGRPHRILRWLGTKPGSGLQAAARRARYDLMAQACRD 81

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++ AH  +DQ ETV  R  R       GL+GM     +D  + + RP L   +  
Sbjct: 82  DGVVDLLLAHHLEDQAETVLHRIDRGTGPD--GLAGMARVRAFD-GVRLLRPLLDVPKVR 138

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           + +      + W EDPSN+D RF R  +R+  
Sbjct: 139 LLATCRSVGVEWAEDPSNSDPRFARTELRQLA 170


>gi|56417150|ref|YP_154224.1| cell cycle protein [Anaplasma marginale str. St. Maries]
 gi|56388382|gb|AAV86969.1| cell cycle protein [Anaplasma marginale str. St. Maries]
          Length = 501

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 11/190 (5%)

Query: 24  VAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           VAVSGG DS+ LL    ALH     ++    +   ++ +H  R  A  E R+V      L
Sbjct: 74  VAVSGGVDSITLLNLVAALH-----KTQATSRPVVLTGNHGFRAEADHETRFVQKRAVAL 128

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +   ++ W   +  +     ARE RY+L+ +     +   ++TAH   DQ ETV M  +
Sbjct: 129 GLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQAETVLMHLE 188

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLSGM +  ++  ++ I RP L   R++I  +  Q+ +SW EDPSN D ++ 
Sbjct: 189 RGSGID--GLSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDPSNQDPKYR 245

Query: 201 RVRVRRFVRD 210
           R   R  + +
Sbjct: 246 RTFFRNLIAE 255


>gi|219871527|ref|YP_002475902.1| cell-cycle protein MesJ [Haemophilus parasuis SH0165]
 gi|219691731|gb|ACL32954.1| cell-cycle protein MesJ [Haemophilus parasuis SH0165]
          Length = 422

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 25/306 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           + +SGG DS+   + LH     R    +K  AI + H L   A     +   +C +  I 
Sbjct: 21  IGLSGGVDSV---VLLHLFAQARQALNLKLRAIHIHHGLSPNADSWATFCEQLCEQWAIP 77

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
            +V   +    Q GL A AR ARY +I +H +     ++ TAH  DDQ+ET ++  +R  
Sbjct: 78  LTVCKVQVQGKQ-GLEANARTARYQVIQQHIQ--RNEMLATAHHLDDQVETFFLALKRGS 134

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+G       + +  N+ I RP L   + DI ++  Q  + W ED SN +  F+   
Sbjct: 135 GIQGLG---AMQAVSFLQNIAIFRPLLSFNKTDILAYAEQYQLEWIEDESNFNTDFD--- 188

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDILNID 260
            R F+R   L  L  + ++F  +  + +   A    LI + L   + S   +    L+I 
Sbjct: 189 -RNFLRQTALPLLNQRWQQFNQMVARSSQHCAEQQQLIEELLHPELAS--RLQNGGLDIT 245

Query: 261 STLLFYLLR----VSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRA 313
               F LL+    V   +    +++P    +E+++  L   K+ K   V + + +I R  
Sbjct: 246 GFEHFSLLKQQQLVRLWLAQAHLAMPSVAQLEQIIQHLILAKADKNPQVKLEQHLIRRYQ 305

Query: 314 NFLWIT 319
             ++IT
Sbjct: 306 QQIFIT 311


>gi|94986853|ref|YP_594786.1| ATPase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731102|emb|CAJ54464.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Lawsonia intracellularis PHE/MN1-00]
          Length = 341

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 16/191 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           ++V  SGG DSM L + LH +  D  F  +       DH LR  +KD+  +V    +   
Sbjct: 40  VIVGCSGGVDSMALALILHCLGIDVVFAHM-------DHQLRAESKDDANHVKSFAAALD 92

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            R  I+   +S    K + G+   AR+ RY  + +  K   A  I T H  +D  E + +
Sbjct: 93  RRCIISRVDISGLAIKYKKGIEETARQERYCFLEQVRKEYGAQWIATGHHLNDLSEDILL 152

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G  G+      D   ++ RP L  RR  + SFL  +NISW ED SN D 
Sbjct: 153 RLLR-----GTGWPGLAGMKAVDKKRYLLRPLLTTRRTLLVSFLSSQNISWVEDNSNKDI 207

Query: 198 RFERVRVRRFV 208
            F+R R+R  +
Sbjct: 208 TFKRNRIRHTI 218


>gi|320536077|ref|ZP_08036134.1| tRNA(Ile)-lysidine synthetase [Treponema phagedenis F0421]
 gi|320147077|gb|EFW38636.1| tRNA(Ile)-lysidine synthetase [Treponema phagedenis F0421]
          Length = 452

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 24/209 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVCSR 79
           +L+AVSGG+DS+ LL ALH++ +D +    +   ++V+H +RE    K +  +VS  C+ 
Sbjct: 25  LLIAVSGGADSLALLTALHTINTDFNH---RLFVVTVNHNIREKNETKADADFVSSFCAH 81

Query: 80  LR---------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           L+         I    V    S  +TG   AAR  RY    E A  ++A  I+TAH  +D
Sbjct: 82  LQPPVPCIVKTIPAGSVKELASIRKTGTEDAARILRYRAFEEAAIEVSADFILTAHNKND 141

Query: 131 QLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
             ET+ MR  +  + K + G+  +    L        RP L   R  I +FL QRNI W 
Sbjct: 142 MYETILMRLFQGGSPKSIAGIPLVRGKYL--------RPLLTVERASIEAFLRQRNIFWR 193

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYL 218
           ED +N +  + R ++R  +  + LH++++
Sbjct: 194 EDKTNFEQVYLRNKIRHTLIPV-LHSVFV 221


>gi|315127141|ref|YP_004069144.1| lysidine forming enzyme [Pseudoalteromonas sp. SM9913]
 gi|315015655|gb|ADT68993.1| lysidine forming enzyme [Pseudoalteromonas sp. SM9913]
          Length = 436

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 11/186 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI- 82
           VA+SGG DS+ LL  +H++   +   ++  SAI V+H L + A    ++    C +L I 
Sbjct: 27  VALSGGVDSVVLLQVMHAL--KQQCPQLDLSAIYVNHGLSDNAHHWRQFCHARCEQLSID 84

Query: 83  --AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
             A +V+     K +T + A AREARY  + EH+ +   ++I+     +DQ+ET  +R +
Sbjct: 85  FKAANVII--EPKSRTSIEAQAREARYQALDEHSPS--DSVILLGQHLNDQVETFLLRLK 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG+G   M  T + +      RP L  +R DI +F  Q NIS   D SN+++RF+
Sbjct: 141 RGSGLKGLG--AMQQTRVLESGRECYRPLLGVKRSDIEAFAQQFNISHITDESNSNERFD 198

Query: 201 RVRVRR 206
           R  +R+
Sbjct: 199 RNFLRQ 204


>gi|15639364|ref|NP_218813.1| hypothetical protein TP0373 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025606|ref|YP_001933378.1| hypothetical protein TPASS_0373 [Treponema pallidum subsp. pallidum
           SS14]
 gi|6136519|sp|O83388|TILS_TREPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695552|sp|B2S2X0|TILS_TREPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3322651|gb|AAC65358.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018181|gb|ACD70799.1| hypothetical protein TPASS_0373 [Treponema pallidum subsp. pallidum
           SS14]
          Length = 477

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 97/197 (49%), Gaps = 20/197 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
           P+ +LVAVSGG+DS+ LL A H +  D  FG +   A++VDH LR +    + R+V  +C
Sbjct: 28  PSCLLVAVSGGADSLALLYAAHELAPD--FG-VCACAVTVDHSLRAQEGALDARFVRALC 84

Query: 78  SRL---------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           +R          +I+   V         G+  AAR  RY +    A    A +++TAHT 
Sbjct: 85  ARFSPPLPCFVQQISAGAVHACAKIRGRGVQDAARALRYKVFDHVAARCGAQVVLTAHTR 144

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET+ MR  +  A   +        I      ++ RP L+  R  +  FL  R + W
Sbjct: 145 DDQYETLLMRLFQGAAASAL------QGIRAARGRYV-RPLLKVSRTCVEDFLQTRGVRW 197

Query: 189 CEDPSNTDDRFERVRVR 205
            ED SNT  ++ R R+R
Sbjct: 198 REDASNTCRKYVRNRIR 214


>gi|307278662|ref|ZP_07559732.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860]
 gi|306504722|gb|EFM73922.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860]
          Length = 497

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    WK+ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWKDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|255974763|ref|ZP_05425349.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2]
 gi|255967635|gb|EET98257.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2]
          Length = 462

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    WK+ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWKDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|300715415|ref|YP_003740218.1| tRNA(Ile)-lysidine synthase [Erwinia billingiae Eb661]
 gi|299061251|emb|CAX58360.1| tRNA(Ile)-lysidine synthase [Erwinia billingiae Eb661]
          Length = 433

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 7/201 (3%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++    + L    H+LV  SGG DS  LL  L ++ + R  G +   AI + H L   A 
Sbjct: 2   AMHALAQHLAGHQHLLVGFSGGLDSTVLLHQLVTLRAQR--GDLHLRAIHIHHGLNPLAD 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             V +   +C R ++   VV+      + G+ AAAR+ARY   S+H +   A  ++TA  
Sbjct: 60  GWVEHCQQLCQRWQVELVVVNVTLDSREKGVEAAARDARYQAFSDHLRP--AECLLTAQH 117

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET  +  +R       GL+GM    L   +  + RP L   R  + ++ ++  +S
Sbjct: 118 LDDQCETFLLALKRGSGPA--GLAGMPVQSLLGTHT-LLRPLLLQTRGQLEAWAVEHALS 174

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W ED SN D RF+R  +R+ V
Sbjct: 175 WIEDDSNQDTRFDRNFLRQKV 195


>gi|331701917|ref|YP_004398876.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929]
 gi|329129260|gb|AEB73813.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929]
          Length = 460

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 9/189 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVS G DSM LL  L  +   R+  + K     VDH LR+ + +E RY+S+ CS   
Sbjct: 23  VVVAVSTGVDSMTLLYMLQHL--PRAV-RPKIIVAYVDHQLRDQSVEETRYISNYCSEHG 79

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +      W K+  P+ G+ AAAR  RY       K   +T ++TAH  DD +ETV M+  
Sbjct: 80  LLLKQAVWPKDDHPKVGIEAAARTFRYRFFERVLKETGSTCLLTAHHGDDLVETVIMKLV 139

Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R    +   L+G+ +T  + D N+   RP L   ++ + SF     I W ED +N     
Sbjct: 140 R--GGQLASLTGIRETRSFADANM--IRPLLSFSKQQLESFAQTTGIRWFEDETNQQLAV 195

Query: 200 ERVRVRRFV 208
           ER R+R  V
Sbjct: 196 ERNRIRHGV 204


>gi|323697897|ref|ZP_08109809.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. ND132]
 gi|323457829|gb|EGB13694.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans ND132]
          Length = 336

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 12/188 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG DS  LL+ LH + S   F      A+ +DH LR  + D+  +   +C RL 
Sbjct: 43  VLVGLSGGVDSTALLLVLHYLSSRADF---TVGAVHLDHQLRPESADDATFARALCERLG 99

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   V    V+    +   GL  A REARYAL +E  ++     I   H  DD  E V M
Sbjct: 100 IDCEVETRDVARLAEERGVGLEEAGREARYALYAELRESGGWDFIALGHQLDDLSEDVLM 159

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G  G+     +D    + RP L   +  +++F+    + W ED SN D 
Sbjct: 160 RLIR-----GTGWPGLSGMAGHDPARGLIRPLLLIPKSTLKAFVTHLGVPWREDASNADP 214

Query: 198 RFERVRVR 205
              R RVR
Sbjct: 215 AMTRNRVR 222


>gi|61216750|sp|Q9RV23|TILS_DEIRA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 582

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 96/196 (48%), Gaps = 29/196 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +LV VSGG+DS+GLL AL +V      G +   A  +DH LR  + D+  +VSD+C+RL
Sbjct: 40  QVLVGVSGGADSVGLLRALLAV------GALPAVA-HLDHALRPESVDDAAWVSDLCARL 92

Query: 81  RIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +          +V + +N       + AAR  RY ++S  AK   A +I+TAHT  DQ 
Sbjct: 93  GVPCEVTRIDVGAVAARRNWN-----LEAARRLRYDVLSRAAKHSGAEVILTAHTRRDQA 147

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV M   R          G    I       + RP+L   R +I ++L      W ED 
Sbjct: 148 ETVLMELLRG--------EGRIRGIPPQRGR-VRRPWLNVGRAEIETYLRGLGQDWREDA 198

Query: 193 SNTDDRFERVRVRRFV 208
           SN D RF R  +RR V
Sbjct: 199 SNADPRFTRAWLRREV 214


>gi|313905490|ref|ZP_07838854.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6]
 gi|313469674|gb|EFR65012.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6]
          Length = 507

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 24/204 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           + V +SGG+DS+ LL+ L  +L   S G+ + +A+ ++H LR + A+D+ R+V ++C+  
Sbjct: 23  VCVGLSGGADSVALLLVLKEILKMGSVGEYRLAAVHINHNLRGQAAEDDSRFVRELCANR 82

Query: 80  ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL--------IMTAHTF 128
              L+I    V+      + GL  A RE R+   +  AK     +        I  AH  
Sbjct: 83  EIPLKIYSCPVAEYAGVRKIGLEEAGREVRHEKFALAAKEFAEEMEADPAKAKIALAHHA 142

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           DDQ ET+  R+ R     G  LSG+        L +L L   RP L   R++I ++L Q+
Sbjct: 143 DDQAETLLFRAAR-----GSSLSGLAGIRPSATLGELLLI--RPLLSVTRDEIEAWLRQK 195

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
            ++W  D +N D+R+ R  +R  V
Sbjct: 196 GVNWRTDETNADERYARNAIRGTV 219


>gi|257081551|ref|ZP_05575912.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol]
 gi|256989581|gb|EEU76883.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol]
          Length = 462

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V+      +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVVEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|314937284|ref|ZP_07844626.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313654580|gb|EFS18330.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 431

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 123/243 (50%), Gaps = 26/243 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+ VAVS G DSM LL  L   L+D S      + + V+H LR+ + +E R++   C + 
Sbjct: 11  HLAVAVSTGIDSMCLLYKL---LNDLSHSYQSITCLHVNHGLRDASVEEERFIKQFCKQY 67

Query: 81  RIAHSVVSWKNSKP-QTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +I   V     S+  + G  + + AR+ RY    E    INA +++TAH  +DQLET++ 
Sbjct: 68  QIPCYVKQLDLSETVEKGKSIQSEARDLRYQWFDEMMSKINADVLLTAHHLNDQLETIFY 127

Query: 138 -----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
                RS R+     +G+    +   Y    +I RP +   + DI+ +    ++ + ED 
Sbjct: 128 RVFTGRSTRN----SLGMHECTERNHY----FICRPLIETYKNDIKQYQTIHHVPFYEDE 179

Query: 193 SNTDDRFERVRVR-RFVRDIDLHALY-----LKMKKFQDLRVKVNN-AVAMLIPKYLTVH 245
           SN  +++ R  +R R +  ID +  +     LK+K + D+++++    ++  I +++ +H
Sbjct: 180 SNHHNKYARNDIRNRLLPAIDENKDFKVEQLLKLKHWHDMQLQLTQRRISCFIEQHVNIH 239

Query: 246 MRS 248
           +  
Sbjct: 240 LNE 242


>gi|227891603|ref|ZP_04009408.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC
           11741]
 gi|227866750|gb|EEJ74171.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC
           11741]
          Length = 453

 Score = 89.7 bits (221), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           +L+AVS G DSM LL   + L  VL+      I+ +   +DH LRE +K+E +++ + C 
Sbjct: 27  VLLAVSTGVDSMVLLSGMLKLSKVLN------IEINVAYIDHQLREQSKEETKFIKEFCF 80

Query: 79  RLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              I   V  W K   P   + AAARE RY    +  K  N   ++TAH  DDQ ET  M
Sbjct: 81  ARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDDQAETFLM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R        L  +    ++  +  I RP L   +++I  +  Q  I + ED +N  D
Sbjct: 141 KLIR--GGNIQQLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYEDETNKSD 198

Query: 198 RFERVRVRRFV 208
            ++R R+R  +
Sbjct: 199 DYQRNRLRHHI 209


>gi|268590514|ref|ZP_06124735.1| tRNA(Ile)-lysidine synthetase [Providencia rettgeri DSM 1131]
 gi|291314100|gb|EFE54553.1| tRNA(Ile)-lysidine synthetase [Providencia rettgeri DSM 1131]
          Length = 450

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 146/325 (44%), Gaps = 39/325 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV  SGG DS  LL AL+ +   R    ++  AI + H L   A +  ++ + +CS+  
Sbjct: 22  ILVGFSGGIDSTVLLHALYLIRQQR-LPSLEIRAIHIHHGLNRKANEWEQHCAQLCSQWD 80

Query: 82  IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I     H VV       Q G+ AAAREARY    E  +     +++TA   DDQ ET  +
Sbjct: 81  IPFICRHVVVD----SSQKGIEAAAREARYQAYREELQ--EGEVLVTAQHLDDQAETFML 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +R     G  LS M + + +     + W+ RP L   R  + +++ ++ +SW ED SN
Sbjct: 135 ALKRGSGPAG--LSSMPELLSFSACCGSTWLLRPLLSTPRIALEAYMQEQQLSWVEDDSN 192

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRS 248
            DDR++    R F+R   LH +    +++      V  + A+      L+ + L   +  
Sbjct: 193 QDDRYD----RNFLR---LHIMPTLSERWPHFSHAVARSAALCAEQESLLDELLKETLEG 245

Query: 249 IIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           ++         D+    S+    L+R    +   Q+ +P +  +ER+   +   ++    
Sbjct: 246 MMDYRGGLFIDDLQGCSSSKRNALIRRWVGL--HQLPMPPFNQLERIWQEVALARQDADP 303

Query: 304 I---GRVVIDRRANFLWITRAVRNL 325
           I   G+  I R    LW+ + + +L
Sbjct: 304 ICRLGQFEIRRYQGALWVVKRINSL 328


>gi|86748940|ref|YP_485436.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           HaA2]
 gi|86571968|gb|ABD06525.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           HaA2]
          Length = 346

 Score = 89.7 bits (221), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+   F      PA I++AVSGG DS+ L+         R  G   F  +++DH L
Sbjct: 9   ISAREASSLFADWKAVPA-IVLAVSGGPDSLALMWLAARWRKARKRGPALF-VVTIDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V      L + H  + W   KP TGL AAAR ARY L+++ AK + A  I
Sbjct: 67  RPEAAREARSVKQFARTLGLPHRTLRWTGDKPATGLPAAARAARYRLLAKAAKAVGAAHI 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MTAHT DDQ ETV MR  R       GL+ M      D  + + RP L   ++ + + L 
Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMPRETARDGAVLV-RPLLDVSKQRLVATLD 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208
           +  I +  DPSN D RF R R+R  +
Sbjct: 184 RAKIGFAVDPSNADPRFTRPRLRELM 209


>gi|325955979|ref|YP_004286589.1| tRNA(Ile)-lysidine synthase [Lactobacillus acidophilus 30SC]
 gi|325332544|gb|ADZ06452.1| tRNA(Ile)-lysidine synthase [Lactobacillus acidophilus 30SC]
          Length = 423

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            LVA S G DSM LL  L  +       K++  A   DH LR  +K+E + + + C +  
Sbjct: 28  FLVAASAGPDSMALLDMLQKM-------KVQVIAAHFDHQLRSDSKNETKILQEYCKKYD 80

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I      W K+ +P  G+ AAAR+ARYA +++ AK   A  ++TAH  DD LE + ++  
Sbjct: 81  IPLFTAVWAKDEQPAAGIEAAARDARYAFLTQIAKKEKADYLLTAHHGDDLLENILLKFI 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + M  S     +++ ++L   RP L   ++++  +  +  I +  D +N +D   
Sbjct: 141 RSGNPEEMN-SLQAVGVMHGVSLL--RPLLAYSKQELFEYDRKNGIEFITDSTNNEDETM 197

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 198 RNRLRHHV 205


>gi|315037515|ref|YP_004031083.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1112]
 gi|312275648|gb|ADQ58288.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1112]
 gi|327182811|gb|AEA31258.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1118]
          Length = 423

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            LVA S G DSM LL  L  +       K++  A   DH LR  +K+E + + + C +  
Sbjct: 28  FLVAASAGPDSMALLDMLQKM-------KVQVIAAHFDHQLRSDSKNETKILQEYCKKYD 80

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I      W K+ +P  G+ AAAR+ARYA +++ AK   A  ++TAH  DD LE + ++  
Sbjct: 81  IPLFTAVWAKDEQPAAGIEAAARDARYAFLTQIAKKEKADYLLTAHHGDDLLENILLKFI 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + M  S     +++ ++L   RP L   ++++  +  +  I +  D +N +D   
Sbjct: 141 RSGNPEEMN-SLQAVGVMHGVSLL--RPLLAYSKQELFEYDRKNGIEFITDSTNNEDETM 197

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 198 RNRLRHHV 205


>gi|170717655|ref|YP_001784732.1| tRNA(Ile)-lysidine synthetase [Haemophilus somnus 2336]
 gi|226695541|sp|B0UUD3|TILS_HAES2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|168825784|gb|ACA31155.1| tRNA(Ile)-lysidine synthetase [Haemophilus somnus 2336]
          Length = 427

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 10/190 (5%)

Query: 18  YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +P+H  +L+  SGG DS  LL  L  +   +    +   AI + H L + A +   +   
Sbjct: 14  FPSHTKLLLGFSGGLDSTVLLSLLAKLRKKQPH--LSLRAIHIHHGLSQNADNWAIHCRQ 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +C +L I+  +       P+ G+ A AREARY  I+ H +  +  +++TAH   DQ ET 
Sbjct: 72  ICQQLDISF-LCEKVTINPRKGIEADAREARYQAIANHLQ--DNEILVTAHHQQDQTETF 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R    +G+G   +   +    NL I RP L C ++ +  +     +SW ED SN 
Sbjct: 129 LLALKRGSGLQGLGAMQIQSVVF---NLPIFRPLLHCTKQQLEQYAKTEKLSWIEDESNA 185

Query: 196 DDRFERVRVR 205
           D+R+ER  +R
Sbjct: 186 DNRYERNFLR 195


>gi|328478101|gb|EGF47969.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus MTCC
           5462]
          Length = 402

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 23/194 (11%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM LL +A+ +         +     + DH LR  ++ E  +V    +R 
Sbjct: 17  VLVAVSGGVDSMVLLDLAVRA-------PNLDVVVATFDHRLRPESRQEQAFVVAAAARY 69

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +     +W+ S       AAAR+ARY  ++  A +  AT+IMTAH  DDQLET+  R  
Sbjct: 70  HVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETILFR-- 127

Query: 141 RDYAEKGMGLSGMCDTI--LYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                  +G SG    +  +     W    + RP L   ++DIR++  +  + +C+DPSN
Sbjct: 128 -------LGRSGDPAALVGIRPDQPWRKKRLVRPLLNFSKDDIRAYAGRHGLDFCDDPSN 180

Query: 195 TDDRFERVRVRRFV 208
            D R+ R ++R  V
Sbjct: 181 ADTRYARNQLRHQV 194


>gi|311028999|ref|ZP_07707089.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13]
 gi|311032268|ref|ZP_07710358.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13]
          Length = 473

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 16/211 (7%)

Query: 7   ESVRFFVRSL-VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E+V  F+    + P+H  ++V VSGG+DSMGLL  L S+   +   ++K     VDH  R
Sbjct: 3   ETVSTFIDKFDLLPSHSTVVVGVSGGADSMGLLHYLDSI---KEAKRLKLVVAHVDHMFR 59

Query: 64  ETAKDE-VRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
               +E + +V + C +  I        V +++N K +  +  AARE RYA   +  +  
Sbjct: 60  GAESEEDMDFVKEQCEKREILFEAEQIDVSAYQNEK-KLSVQVAARECRYAFYEKVMRKY 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A ++   H  DDQ+ET+ MR  R  +  G   +G+     +   + I RPFL   + +I
Sbjct: 119 RADVLALGHHADDQVETILMRLGRGSSMSGH--AGILPKRTFGAGV-IVRPFLTVTKSEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +L    + +  DPSN  D + R R+R  +
Sbjct: 176 MEYLKANEVPYRHDPSNDKDAYRRNRLRHHI 206


>gi|296282864|ref|ZP_06860862.1| ATPase [Citromicrobium bathyomarinum JL354]
          Length = 288

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 15/169 (8%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           +  A +VDH LR  + DE  +V+ VC  L I H+ +    S     L A AR  RY  + 
Sbjct: 10  RVRAATVDHGLRPESADEAAFVARVCEGLGIPHATLRVDVSPGN--LQANARAVRYEALG 67

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--------NL 163
            H + + A++  TAH  DDQ ET+ MR  R     G GL+G+     + +         +
Sbjct: 68  CHFEQVGASVFATAHHADDQAETLLMRLNR-----GSGLAGLAGVRPWSVFFPEGIIEEM 122

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + RP L  RR ++ + +    I   +DPSN+DD F+R R+R+ + D +
Sbjct: 123 VMVRPLLGWRRGELAAVVRAAGIEAVDDPSNSDDAFDRARMRKAIADAE 171


>gi|217976965|ref|YP_002361112.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2]
 gi|217502341|gb|ACK49750.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2]
          Length = 377

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHS---VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           IL+AVSGG DS+ L++          +R          +VDH LR  +  E   V+    
Sbjct: 51  ILLAVSGGPDSIALMLLASRWARAREERGLAAPLLHVSTVDHGLRTGSGAEAEAVAAWAK 110

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              + H  + W   KP+T +   AREARY L+   A  + A +I TAH  DDQ ET+  R
Sbjct: 111 AAGLPHETLIWNGGKPKTRIQERAREARYDLLCACAARLGADVIATAHHADDQAETILFR 170

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GL+GM     +   L  SRP L C +  + ++   R   +  DPSN +  
Sbjct: 171 LTRGSGPG--GLAGM-SARFFRHGLIHSRPLLSCDKAALIAYCEARRHDFFADPSNCNPA 227

Query: 199 FERVRVRRFVR 209
           F R R+R  ++
Sbjct: 228 FARTRMRALLK 238


>gi|113461077|ref|YP_719145.1| cell-cycle protein [Haemophilus somnus 129PT]
 gi|123132098|sp|Q0I3D1|TILS_HAES1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|112823120|gb|ABI25209.1| cell-cycle protein [Haemophilus somnus 129PT]
          Length = 427

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 10/190 (5%)

Query: 18  YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +P+H  +L+  SGG DS  LL  L  +   +    +   AI + H L + A +   +   
Sbjct: 14  FPSHTKLLLGFSGGLDSTVLLSLLAKLRKKQPH--LSLRAIHIHHGLSQNADNWAIHCRQ 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +C +L I+  +       P+ G+ A AREARY  I+ H +  +  +++TAH   DQ ET 
Sbjct: 72  ICQQLDISF-LCEKVTINPRKGIEADAREARYQAIANHLQ--DNEILVTAHHQQDQTETF 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R    +G+G   +   +    NL I RP L C R+ +  +     +SW ED SN 
Sbjct: 129 LLALKRGSGLQGLGAMQIQSVVF---NLPIFRPLLHCTRQQLEQYAKTEKLSWIEDESNA 185

Query: 196 DDRFERVRVR 205
           D+R++R  +R
Sbjct: 186 DNRYDRNFLR 195


>gi|315028818|gb|EFT40750.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4000]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|307286958|ref|ZP_07567033.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109]
 gi|306501904|gb|EFM71193.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109]
 gi|315165845|gb|EFU09862.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1302]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|315151132|gb|EFT95148.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0012]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|312904628|ref|ZP_07763783.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635]
 gi|310631980|gb|EFQ15263.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635]
 gi|315160783|gb|EFU04800.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0645]
 gi|315579382|gb|EFU91573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0630]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|229546907|ref|ZP_04435632.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322]
 gi|293382701|ref|ZP_06628626.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712]
 gi|293388117|ref|ZP_06632644.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613]
 gi|307290191|ref|ZP_07570109.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411]
 gi|312908597|ref|ZP_07767539.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512]
 gi|312909255|ref|ZP_07768112.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516]
 gi|229307835|gb|EEN73822.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322]
 gi|291079861|gb|EFE17225.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712]
 gi|291082493|gb|EFE19456.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613]
 gi|306498747|gb|EFM68246.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411]
 gi|310625384|gb|EFQ08667.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512]
 gi|311290497|gb|EFQ69053.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|29374904|ref|NP_814057.1| hypothetical protein EF0263 [Enterococcus faecalis V583]
 gi|257418646|ref|ZP_05595640.1| predicted protein [Enterococcus faecalis T11]
 gi|61216623|sp|Q839B3|TILS_ENTFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29342362|gb|AAO80128.1| conserved domain protein [Enterococcus faecalis V583]
 gi|257160474|gb|EEU90434.1| predicted protein [Enterococcus faecalis T11]
          Length = 462

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|257088026|ref|ZP_05582387.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6]
 gi|256996056|gb|EEU83358.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6]
          Length = 462

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|315171404|gb|EFU15421.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1342]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|257088703|ref|ZP_05583064.1| predicted protein [Enterococcus faecalis CH188]
 gi|256997515|gb|EEU84035.1| predicted protein [Enterococcus faecalis CH188]
          Length = 462

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|256960614|ref|ZP_05564785.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96]
 gi|257417629|ref|ZP_05594623.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis AR01/DG]
 gi|256951110|gb|EEU67742.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96]
 gi|257159457|gb|EEU89417.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ARO1/DG]
          Length = 462

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|227520048|ref|ZP_03950097.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104]
 gi|227555909|ref|ZP_03985956.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22]
 gi|227072596|gb|EEI10559.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104]
 gi|227174966|gb|EEI55938.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22]
 gi|315573571|gb|EFU85762.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309B]
 gi|315582081|gb|EFU94272.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309A]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|237745448|ref|ZP_04575928.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS]
 gi|229376799|gb|EEO26890.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS]
          Length = 468

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 93/200 (46%), Gaps = 18/200 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S   PA I +A SGG DS  LL   H   ++++   I+  A  + H L   A   + +  
Sbjct: 33  SSAVPA-IAIAYSGGLDSTVLLHCAHRFAAEKN---IRLFAFHIHHGLNRKADAWLNHCE 88

Query: 75  DVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             C    I       + +     G+ A AR  RYA + E  +    TL++TAH  DDQ+E
Sbjct: 89  AACMEQGIRFESRKVRVDRGSGDGIEAEARSKRYAALGEMCRKNEVTLLLTAHHEDDQVE 148

Query: 134 TVYMRSQRDYAEKGMGLSGMCD--------TILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           TV M   R     G G++G+           +L D   W+ RPFL   RE++ S+   +N
Sbjct: 149 TVLMHLMR-----GTGIAGLAGMDSVTQAPELLGDTKTWVGRPFLSLSREELASWAKAKN 203

Query: 186 ISWCEDPSNTDDRFERVRVR 205
           +S  ED SN D ++ R  +R
Sbjct: 204 LSCVEDDSNNDTKYTRNAIR 223


>gi|315147115|gb|EFT91131.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4244]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|315168156|gb|EFU12173.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1341]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|315026779|gb|EFT38711.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2137]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|299139540|ref|ZP_07032714.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298598468|gb|EFI54632.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 395

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 94/209 (44%), Gaps = 26/209 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           + VA+SGG+DS  LL+AL    + +    +  SA  V H LR  E   DEV +V ++C R
Sbjct: 44  VCVAISGGADSTALLLALKEANAAKESLGVVVSAAHVHHGLRGGEADDDEV-FVRELCER 102

Query: 80  LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L +     H   + + +  + G+  AARE RY  +           I TAHT DDQ ETV
Sbjct: 103 LAVPLTVFHVDTAARQAAEREGVEEAARELRYEALRGLLPEGRVDAIATAHTLDDQAETV 162

Query: 136 YMRSQRDY-----------------AEKGMGLS--GMCDTILYDLNLWISRPFLRCRRED 176
            M+  R                    E+G+GL   G    +   +   + RP L  RR +
Sbjct: 163 MMKLLRGAWTEGLGGISPVVQGLGIREQGLGLGVEGSGPRVQGSVGGRVVRPLLGVRRAE 222

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           + +FL  R   W  D SN D    R RVR
Sbjct: 223 VEAFLQARGQVWRTDSSNRDLELTRNRVR 251


>gi|301300317|ref|ZP_07206524.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852090|gb|EFK79767.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 452

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           +L+AVS G DSM LL   + L  VL       ++ +   +DH LRE +K+E +++ + C 
Sbjct: 26  VLLAVSTGVDSMVLLSGMLKLSKVLD------VEINVAYIDHQLREQSKEETKFIKEFCF 79

Query: 79  RLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              I   V  W K   P   + AAARE RY    +  K  N   ++TAH  DDQ ET  M
Sbjct: 80  ARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDDQAETFLM 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R        L  +    ++  +  I RP L   +++I  +  Q  I + ED +N  D
Sbjct: 140 KLIR--GGNIQQLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYEDETNKSD 197

Query: 198 RFERVRVRRFV 208
            ++R R+R  +
Sbjct: 198 DYQRNRLRHHI 208


>gi|256762058|ref|ZP_05502638.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3]
 gi|256964186|ref|ZP_05568357.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704]
 gi|256683309|gb|EEU23004.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3]
 gi|256954682|gb|EEU71314.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704]
          Length = 462

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|238019645|ref|ZP_04600071.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748]
 gi|237863686|gb|EEP64976.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748]
          Length = 332

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 12/193 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA SGG DSM LL  LH + + R     K     VDHC+R  +KDEV ++      L 
Sbjct: 26  ILVACSGGPDSMALLYLLHDIATHR-HTTYKIGVAIVDHCIRPESKDEVLWLQHQVEELG 84

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +     ++     + + +       R+ RY  ++E A++     I  AH  DDQ E++  
Sbjct: 85  LPFYSATFDVPSLSKEHKKSEETIGRQVRYQWLNEIAQSEGYDYISVAHHKDDQAESILA 144

Query: 138 RSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
              R     G GL+G+     +  D ++ + RP L   +E++ ++L  R +++C D +N 
Sbjct: 145 HLIR-----GTGLNGLTGMAVVSNDYDIPVIRPLLDVPKEELLAYLADRKLTYCIDSTND 199

Query: 196 DDRFERVRVRRFV 208
           D R++R ++R  V
Sbjct: 200 DIRYQRNKIRHRV 212


>gi|307268516|ref|ZP_07549891.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248]
 gi|306515177|gb|EFM83717.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248]
 gi|315032983|gb|EFT44915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0017]
 gi|315036604|gb|EFT48536.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0027]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|257084199|ref|ZP_05578560.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1]
 gi|256992229|gb|EEU79531.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1]
          Length = 462

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|256618326|ref|ZP_05475172.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200]
 gi|256597853|gb|EEU17029.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200]
          Length = 462

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|307274227|ref|ZP_07555435.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855]
 gi|306509189|gb|EFM78251.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|307276452|ref|ZP_07557575.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134]
 gi|306506932|gb|EFM76079.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|288957828|ref|YP_003448169.1| cell cycle protein [Azospirillum sp. B510]
 gi|288910136|dbj|BAI71625.1| cell cycle protein [Azospirillum sp. B510]
          Length = 448

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 109/383 (28%), Positives = 169/383 (44%), Gaps = 21/383 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DS+ L + L   +++         A++VDH LR  +  E   V    +RL 
Sbjct: 28  IAVGVSGGGDSVALALLLRHWVAEHGG---SLLALTVDHGLRPDSAAEASAVGRTMARLD 84

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H V+ W+  KP TGL AAAR AR+ L++          +  AH  DDQ ETV +R  R
Sbjct: 85  VPHHVLRWEGEKPSTGLQAAARAARHRLLATACAEAGILHLALAHHRDDQAETVLLRLAR 144

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GL+GM   +  D  + I RP L    + + +      + W EDPSN + RF R
Sbjct: 145 GSGVD--GLAGMA-PVRADGPVRIIRPLLGFPHDRLLATCRAEGVGWIEDPSNANPRFAR 201

Query: 202 VRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            R+R          +D   L    ++    R  +  A A L+    T+H    I +++  
Sbjct: 202 ARLRAASDLLGGEGLDADRLSEVARRAGRARAALEQATAALLADAATIHAEGWITLARGP 261

Query: 257 LN-IDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
           L+   + +    L  + A+ GG  + P    ++ER++  L +G+ G +  G VV  RR  
Sbjct: 262 LSAAPAEIALRALGRTLAVVGGAAAHPVRDEALERLLGTLAAGRGGTLG-GCVVRHRRGA 320

Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQF-----QNLSDSLIQIGPQSYRK--ADVPSG 367
            +           L + P    +WDGR+        N   ++  +G   +R+  A   +G
Sbjct: 321 IMIAREPAAVTERLTVPPGGRVLWDGRFDLWLSPRWNRPVTVAALGAAGWREWVARPAAG 380

Query: 368 IPPIIAQRALSSMPSKEGGKPLL 390
            PP +      S+PS   G  LL
Sbjct: 381 RPPDLPVPVRESLPSLWSGTELL 403


>gi|327534060|gb|AEA92894.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus faecalis OG1RF]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|256855217|ref|ZP_05560578.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Enterococcus faecalis T8]
 gi|256709730|gb|EEU24777.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Enterococcus faecalis T8]
          Length = 500

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 59  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 115

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 116 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 175

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 176 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 229

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 230 YLRNRLRNQV 239


>gi|229550496|ref|ZP_04439221.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC
           29200]
 gi|229304353|gb|EEN70349.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC
           29200]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|315172637|gb|EFU16654.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1346]
          Length = 497

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|256956808|ref|ZP_05560979.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5]
 gi|257078478|ref|ZP_05572839.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus
           faecalis JH1]
 gi|294779311|ref|ZP_06744714.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1]
 gi|256947304|gb|EEU63936.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5]
 gi|256986508|gb|EEU73810.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus
           faecalis JH1]
 gi|294453597|gb|EFG21996.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1]
          Length = 462

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|300214978|gb|ADJ79394.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius CECT
           5713]
          Length = 456

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           +L+AVS G DSM LL   + L  VL       ++ +   +DH LRE +K+E +++ + C 
Sbjct: 26  VLLAVSTGVDSMVLLSGMLKLSKVLD------VEINVAYIDHQLREQSKEETKFIKEFCF 79

Query: 79  RLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              I   V  W K   P   + AAARE RY    +  K  N   ++TAH  DDQ ET  M
Sbjct: 80  ARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDDQAETFLM 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R        L  +    ++  +  I RP L   +++I  +  Q  I + ED +N  D
Sbjct: 140 KLIR--GGNIQQLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYEDETNKSD 197

Query: 198 RFERVRVRRFV 208
            ++R R+R  +
Sbjct: 198 DYQRNRLRHHI 208


>gi|145632651|ref|ZP_01788385.1| DNA mismatch repair protein [Haemophilus influenzae 3655]
 gi|144986846|gb|EDJ93398.1| DNA mismatch repair protein [Haemophilus influenzae 3655]
          Length = 430

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 149/343 (43%), Gaps = 34/343 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            L+A+SGG DS  LL     +   R     +   AI + H L   A    ++  D+C + 
Sbjct: 19  FLIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG+G +    ++L+ +   I RP L   R  +  +  +  ++W  D SN D+RF+
Sbjct: 136 RGSGLKGLG-AMQQQSVLFGMP--IFRPLLGFTRPQLEDYAKKEKLNWITDESNEDNRFD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +    A    I N  
Sbjct: 193 ----RNFLRNEILPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQF 247

Query: 261 STLLF---------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308
             L F          LLR+  A    Q+ +P  R + +++   +F K        +   V
Sbjct: 248 KLLQFRQYPPAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKV 305

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
           I R  + L++T+   +L    L  E+ T+        NL D+L
Sbjct: 306 IRRYQDSLYLTKPFSDLTKYCLKLEQNTL--------NLPDNL 340


>gi|328463465|gb|EGF35116.1| tRNA(Ile)-lysidine synthase [Lactobacillus helveticus MTCC 5463]
          Length = 418

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 7/188 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA S G DSM LL  L ++  +  F   K  A   +H LR  +++E +++   CS   
Sbjct: 19  LLVAASSGPDSMALLDMLRNLQDNAHF---KLMAAHFNHQLRADSEEESKFLKKYCSENH 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +  W K  +P+ G+ AAAR ARYA +++ AK  NA  ++TAH  DD LE + ++  
Sbjct: 76  VPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENILLKFI 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + M    M   +     + + RP L   + ++  +  +  I +  D +N  D   
Sbjct: 136 RSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQADETM 192

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 193 RNRLRHHV 200


>gi|330998820|ref|ZP_08322547.1| tRNA(Ile)-lysidine synthetase [Parasutterella excrementihominis YIT
           11859]
 gi|329576034|gb|EGG57553.1| tRNA(Ile)-lysidine synthetase [Parasutterella excrementihominis YIT
           11859]
          Length = 478

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 6/187 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P +++VA SGG DS  LL A+ S L  +S+G+I  +A+ V H L + A +   +  +   
Sbjct: 47  PINVIVAFSGGLDSSVLLYAV-SQLKGKSYGEI--TAVHVHHGLSKHANEWAEFCEERAK 103

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  +   +          G  A AR+ RY ++ E A+   A  I+TAH  DDQLET  ++
Sbjct: 104 KCGVRFVLRKVTVPSGGAGFEAEARQLRYEVLEEEARKAAADAILTAHHLDDQLETFLIQ 163

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GL+ M   +  D    I RP L  +R ++  F   R I W ED SN D +
Sbjct: 164 WMRGSGP--AGLAAMPPLLRKD-GCTIMRPLLGFQRTELERFAEIRGIKWVEDESNEDTK 220

Query: 199 FERVRVR 205
           + R  +R
Sbjct: 221 YLRNAIR 227


>gi|255971763|ref|ZP_05422349.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1]
 gi|257421552|ref|ZP_05598542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98]
 gi|255962781|gb|EET95257.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1]
 gi|257163376|gb|EEU93336.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98]
          Length = 462

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|42521051|ref|NP_966966.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|61217299|sp|Q73FR9|TILS_WOLPM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|42410792|gb|AAS14900.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 431

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 143/348 (41%), Gaps = 35/348 (10%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLRETAKDEVRYV 73
           S  Y   + VAVSGG DS   ++ LH + +     K+    A++V+H LR  ++ E  +V
Sbjct: 14  SAFYNNQVAVAVSGGVDS---IVLLHLMTNWAKKNKLSLPIALTVNHGLRPESQKEADFV 70

Query: 74  SDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 L    S +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ 
Sbjct: 71  VSYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQA 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ET  +R      E+G G+ G+   D   +   + I RP L   R +I  +     + W E
Sbjct: 131 ETFLLR-----LERGSGVDGLSSMDYKSFLNGIDIFRPLLNFSRSEIEKYAKLHRLKWIE 185

Query: 191 DPSNTDDRFERVRVRRFVRDID----------LHALYLKMKK---FQDLRVKVNNAVAML 237
           D SN D ++ R   R  ++  D          L AL++K          R+  N+ V + 
Sbjct: 186 DRSNHDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVH 245

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLK 295
              Y+ + +     + ++I          LL  S      +   P Y S+  +   +  K
Sbjct: 246 DLGYIEIKLSEFYQLPEEI-------ALRLLLYSIMAIASKHYKPRYSSLIAIFNRILQK 298

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP-EETTVWDGRY 342
                C   G  +     N L I  + R     +  P  E T WD R+
Sbjct: 299 DSNVNCTLSGCKIRKYGENILIIRESSRIQEITVNLPLNEPTQWDNRF 346


>gi|315145393|gb|EFT89409.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2141]
          Length = 497

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|332703890|ref|ZP_08423978.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554039|gb|EGJ51083.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 340

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 93/202 (46%), Gaps = 17/202 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG+DS  LL  L   L+ R    I   A  VDH LR  +  +  Y  ++C+   
Sbjct: 38  LLVALSGGADSTALLYCLR-YLAPRMC--ISLLAAHVDHGLRPESGQDAAYCRELCAAQN 94

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    A   VS    +   G+  A R ARY    +     NA L++TAH  +D  E   M
Sbjct: 95  VPLYEAKLDVSGLAKQSGMGIEEAGRHARYDFFQKTLVGQNADLLLTAHHLNDLAEDALM 154

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G   +     YD    + RP L     ++R FL     SW EDPSNTD 
Sbjct: 155 RLIR-----GTGWPELAGMPAYDPQRNLLRPLLLTPGTNLREFLTNIGASWREDPSNTDP 209

Query: 198 RFERVRVRRFVRDIDLHALYLK 219
            F R RVR     +D+  L+L+
Sbjct: 210 AFLRNRVR-----LDILPLFLR 226


>gi|315156267|gb|EFU00284.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0043]
 gi|315158588|gb|EFU02605.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0312]
          Length = 497

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|291059764|gb|ADD72499.1| tRNA(Ile)-lysidine synthase [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 447

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 95/194 (48%), Gaps = 20/194 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVAVSGG+DS+ LL A H +  D  FG +   A++VDH LR +    + R+V  +C+R 
Sbjct: 1   MLVAVSGGADSLALLYAAHELAPD--FG-VCACAVTVDHSLRAQEGALDARFVRALCARF 57

Query: 81  ---------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                    +I+   V         G+  AAR  RY +    A    A +++TAHT DDQ
Sbjct: 58  SPPLPCFVQQISAGAVHACAKIRGRGVQDAARALRYKVFDHVAARCGAQVVLTAHTRDDQ 117

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ MR  +  A   +        I      ++ RP L+  R  +  FL  R + W ED
Sbjct: 118 YETLLMRLFQGAAASAL------QGIRAARGRYV-RPLLKVSRTCVEDFLQTRGVRWRED 170

Query: 192 PSNTDDRFERVRVR 205
            SNT  ++ R R+R
Sbjct: 171 ASNTCRKYVRNRIR 184


>gi|90962327|ref|YP_536243.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118]
 gi|90821521|gb|ABE00160.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118]
          Length = 452

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           +L+AVS G DSM LL   + L  VL       ++ +   +DH LRE +K+E +++ + C 
Sbjct: 26  VLLAVSTGVDSMVLLSGMLKLSKVLD------VEINIAYIDHQLREQSKEETKFIKEFCF 79

Query: 79  RLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              I   V  W K   P   + AAARE RY    +  K  N   ++TAH  DDQ ET  M
Sbjct: 80  ARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDDQAETFLM 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R        L  +    ++  +  I RP L   +++I  +  Q  I + ED +N  D
Sbjct: 140 KLIR--GGNIQQLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYEDETNKSD 197

Query: 198 RFERVRVRRFV 208
            ++R R+R  +
Sbjct: 198 DYQRNRLRHHI 208


>gi|260582332|ref|ZP_05850125.1| DNA mismatch repair protein [Haemophilus influenzae NT127]
 gi|260094700|gb|EEW78595.1| DNA mismatch repair protein [Haemophilus influenzae NT127]
          Length = 430

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 153/341 (44%), Gaps = 32/341 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L + A +  ++  D+C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSQNADNWAKHCQDLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIPLIIERVQVDKT-NGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  +  +  Q  ++W  D SN D+RF+
Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMQ--ILRPLLGFTRPQLEDYAQQEKLNWITDESNKDNRFD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +  I      I N  
Sbjct: 193 ----RNFLRNEILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAKNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
           R  + L++T+   +L    L  E+ T+        NL D L
Sbjct: 308 RYQDSLYLTKRFSDLTKCCLKLEQNTL--------NLPDDL 340


>gi|300861978|ref|ZP_07108058.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11]
 gi|295112548|emb|CBL31185.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Enterococcus sp. 7L76]
 gi|300848503|gb|EFK76260.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11]
          Length = 462

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|229551622|ref|ZP_04440347.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus
           LMS2-1]
 gi|258540711|ref|YP_003175210.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus Lc 705]
 gi|229315026|gb|EEN80999.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus
           LMS2-1]
 gi|257152387|emb|CAR91359.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus Lc
           705]
          Length = 435

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 23/194 (11%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM LL +A+ +         +     + DH LR  ++ E  +V+   +R 
Sbjct: 17  VLVAVSGGVDSMVLLDLAVRA-------PNLDVVVATFDHRLRPESRQEQAFVAAAAARY 69

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +     +W+ S       AAAR+ARY  ++  A +  AT+IMTAH  DDQLETV  R  
Sbjct: 70  HVPVVTGTWQRSAATAVSEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLFR-- 127

Query: 141 RDYAEKGMGLSGMCDTI--LYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                  +G SG    +  +     W    + RP L   ++DIR++  +  + +C+DPSN
Sbjct: 128 -------LGRSGDPAALVGIRPDQPWRKKRLVRPLLNFSKDDIRAYAGRHGLDFCDDPSN 180

Query: 195 TDDRFERVRVRRFV 208
            D R+ R ++R  V
Sbjct: 181 ADTRYARNQLRHQV 194


>gi|148264776|ref|YP_001231482.1| tRNA(Ile)-lysidine synthetase [Geobacter uraniireducens Rf4]
 gi|146398276|gb|ABQ26909.1| tRNA(Ile)-lysidine synthetase [Geobacter uraniireducens Rf4]
          Length = 459

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE--VRYVSDVC 77
           ++VAVSGG+DS+ LL     VL+  S  +++   + ++HCLR  E+  DE  VR ++   
Sbjct: 21  VVVAVSGGADSVALL----DVLAGFSSLRLRLIVVHLNHCLRGAESDADEAFVRELAGKY 76

Query: 78  SRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               +  +V V   + + +  L  A R ARY   SE A +  A  ++ AH  DDQ ETV 
Sbjct: 77  GVTFVTQAVDVQDLSKREKLSLEEAGRAARYRFFSEIAASCKARAVVLAHHADDQAETVL 136

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G G SG+C        +++ RP L   R +I ++L +R + +  D SN D
Sbjct: 137 MRLLR-----GAGGSGLCAMAAKSAGMYV-RPLLSVTRFEIEAYLRERGLVFRTDSSNAD 190

Query: 197 DRFERVRVR 205
             F R RVR
Sbjct: 191 VNFLRNRVR 199


>gi|323479476|gb|ADX78915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 62]
          Length = 462

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 21  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 78  LTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 137

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 138 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 191

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 192 YLRNRLRNQV 201


>gi|319943422|ref|ZP_08017704.1| tRNA(Ile)-lysidine synthetase [Lautropia mirabilis ATCC 51599]
 gi|319743237|gb|EFV95642.1| tRNA(Ile)-lysidine synthetase [Lautropia mirabilis ATCC 51599]
          Length = 476

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 28/219 (12%)

Query: 4   SPIESVR-FFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           +P++++R    R+ + P   +L+A SGG DS    + +H+V + R    ++ +   V H 
Sbjct: 5   TPVDALRQCLQRAGLGPDDTLLLACSGGRDSQ---VLMHAVAALRPV--VRAAVAHVHHG 59

Query: 62  LRETAKDEVRYVSDVCS---------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
           L+  A D + + +   S         RLR++    +        GL A AR  RY  +++
Sbjct: 60  LQSRADDWLVFCAAEASSLGLPFLSRRLRVSAGFGA-------LGLEAWARAGRYRALAD 112

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPF 169
            A  I A +++TAH  +DQLETV +R +R      +GL+GM ++         + + RPF
Sbjct: 113 MAAEIGARVVLTAHHANDQLETVELRRRRGSGL--LGLAGMRESSPMPHAPAGMRVLRPF 170

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           L   R+ +  +     I W EDPSN D R  R RVRRF+
Sbjct: 171 LGLSRQQLAEWAQAHGIQWVEDPSNQDTRLARNRVRRFL 209


>gi|291561227|emb|CBL40026.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [butyrate-producing
           bacterium SS3/4]
          Length = 541

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           +L AVSGG+DS+ LL+ LH + ++     IK  A  ++H +R  E  +DE R+V ++C R
Sbjct: 36  VLAAVSGGADSVCLLLLLHEMAAELG---IKVFAFHMNHGIRGAEADRDE-RFVMELCER 91

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I    AH  V    ++       A R  RY  + E A+      I  AH  DD  ETV
Sbjct: 92  LNIPLTVAHEKVEEYAAERGLSGEEAGRILRYHHLGETAEKYQCAKIAVAHHEDDDAETV 151

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G GL+G+        N  I RP L   R++I  +L ++ +SWCED +N 
Sbjct: 152 LLNLFR-----GSGLAGLSGIRPVREN--IIRPLLCVSRKEIEEYLNEQELSWCEDSTNK 204

Query: 196 DDRFERVRVR 205
           ++ + R ++R
Sbjct: 205 ENDYTRNKIR 214


>gi|149186936|ref|ZP_01865245.1| ATPase [Erythrobacter sp. SD-21]
 gi|148829445|gb|EDL47887.1| ATPase [Erythrobacter sp. SD-21]
          Length = 325

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 17/194 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS+ LL+     L     G ++  A +VDH LR  + +E R  + +C  L + 
Sbjct: 29  IAFSGGPDSLALLLLAVEALP----GSVE--AATVDHGLRAESAEEARNAARICEALGMP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H  +S   + P   + A AR ARY  ++E A+  +   I TAH  DDQ ET  MR+ R  
Sbjct: 83  HETLS--VTIPHGNVQAEARHARYEALAEWAERRSLDYIATAHHADDQAETFLMRANRSS 140

Query: 144 AEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                GLSG+      T L + +L + RP L  RR  +             DPSN D+ F
Sbjct: 141 -----GLSGLAAVRAATSLGEGDLIVLRPLLPWRRSALEDIARDSGFPVAADPSNLDESF 195

Query: 200 ERVRVRRFVRDIDL 213
           +RVR+R+ + ++D 
Sbjct: 196 DRVRMRKGLAEVDF 209


>gi|328950667|ref|YP_004368002.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450991|gb|AEB11892.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
          Length = 528

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 90/191 (47%), Gaps = 20/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           +L AVSGG DS+ LL  L +   D     +       DH LR  +  +  +V  +  RL 
Sbjct: 26  LLAAVSGGGDSVALLYLLKAAGRDTIVAHL-------DHALRPDSAADAAFVEKLAQRLG 78

Query: 81  ---RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
                 H  V     + +  L AAARE RYA ++  A+   A  I+TAHT DD  ETV +
Sbjct: 79  FPLETEHVDVRALAHRKRINLEAAAREVRYAFLARVARRWKARCILTAHTLDDNAETVLL 138

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R  A +G+G+          L   ++RP L   R ++R++L  R   W EDP+N   
Sbjct: 139 QILRG-AGRGLGIR--------PLQRRVARPLLEFSRAELRAYLEARGARWLEDPTNRSL 189

Query: 198 RFERVRVRRFV 208
             +R  +R  V
Sbjct: 190 ELDRNYLRHAV 200


>gi|312115987|ref|YP_004013583.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311221116|gb|ADP72484.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 484

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 151/331 (45%), Gaps = 17/331 (5%)

Query: 22  ILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +++AVSGG DSM L  L    + L+ R    I  +  +VDH LR  + +E  +V      
Sbjct: 56  LVLAVSGGPDSMALMHLARRWATLASRQAATITVA--TVDHGLRPESAEEATFVKAHARA 113

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  + W   KP  GL AAAR ARYAL++  A+ +N   ++TAHT DDQ ET+ MR 
Sbjct: 114 LGFEHVTLVWSGEKPSAGLQAAARRARYALLTAQAR-VNGASLLTAHTRDDQAETLIMRL 172

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R       GLS +      D  + + RP L   +  + ++L  R++ +  DPSN +  F
Sbjct: 173 SRGSGVD--GLSAIAPVSGRD-GVRLVRPLLGFSKTRLTAYLRARHVPFVRDPSNENTAF 229

Query: 200 ERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           ERVR+R  ++      +   AL L   +    R  ++ A    +  +  V   +   I +
Sbjct: 230 ERVRLRLAMKALANAGVSKAALALSAARLGRSRAALDEAAERFLDGFFRVSPLAHGEIDR 289

Query: 255 DILNI--DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
           +  +   D   L  L RV   + GG+   P    +ER++  L+S        G ++I   
Sbjct: 290 EAFDALPDEIALRVLARV-LPLVGGRAEPPRMMRLERLLENLRSRNSEATLGGSLMIAAA 348

Query: 313 ANFLWITRAVRNLPT-LILYPEETTVWDGRY 342
               +     R  P  L L P    +WD R+
Sbjct: 349 GRLSFYREPGRMKPEPLFLEPRVAVLWDRRF 379


>gi|293390367|ref|ZP_06634701.1| DNA mismatch repair protein [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950901|gb|EFE01020.1| DNA mismatch repair protein [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 448

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 8/188 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             L+  SGG DS  LL        +R   +++  AI + H L   A     +   +C +L
Sbjct: 23  QFLIGFSGGLDSTALLTLFAKHRENRPHFQLR--AIHIHHGLSPNADAWTAHCQQICRQL 80

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   +   K  + Q G+ A AREARY  I++H   +    + TAH   DQ ET ++  +
Sbjct: 81  NIPLLIQPVK-VRLQNGIEAGAREARYEAIAQH--ILPEEWLATAHHQQDQTETFFLALK 137

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +   ++I+Y +   I RP L   R+ + +F+ Q+ ++W ED SN D++++
Sbjct: 138 RGSGLQGLG-AMQANSIVYGVP--IFRPLLNFSRQQLMAFVQQQQLTWVEDESNEDNQYD 194

Query: 201 RVRVRRFV 208
           R  +R  V
Sbjct: 195 RNFLRNVV 202


>gi|322831607|ref|YP_004211634.1| tRNA(Ile)-lysidine synthetase [Rahnella sp. Y9602]
 gi|321166808|gb|ADW72507.1| tRNA(Ile)-lysidine synthetase [Rahnella sp. Y9602]
          Length = 447

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 149/334 (44%), Gaps = 28/334 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS  LL  L + L D++   I+  A+ + H L + A D V +    C +  
Sbjct: 24  LCVAFSGGLDSSVLLAGL-AELRDKALPDIELRALHIHHGLSQFADDWVAHCQTFCQQRD 82

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I  SV   +    + G+ AAAR ARY   +E        +++TA   +DQ ET  +  +R
Sbjct: 83  IPFSVAKVQVDAQEGGIEAAARTARYQAFAE--SLTAGEVLLTAQHLNDQCETFMLALKR 140

Query: 142 DYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                G+  +SG   T  Y L     RPFL   RE +  +  Q  + W ED SN D RF+
Sbjct: 141 GSGPAGLSAMSGDSSTHGYRL----LRPFLELSREQLEEYAKQLKLCWIEDDSNRDARFD 196

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--QDILN 258
               R F+R     ALY +   F     +  +  A        +   S+ +++  Q  L+
Sbjct: 197 ----RNFLRLDIFPALYQRWPHFAQATARSASLCAEQETLLDELLSESLTSLTDEQGSLS 252

Query: 259 IDSTLLFYLLRVSA------AICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVI 309
           ++    F  +R SA      A+ G +  +P    ++R+   +   +   +  + +G++V+
Sbjct: 253 VERLKAFSAVRRSALLRRWLALRGAR--MPSREQLQRIWDEVALSREDAQAQLVLGKMVV 310

Query: 310 DRRANFLWITRAVRNLPTLILY---PEETTVWDG 340
            R    L++    R+L   IL     E+ T+ DG
Sbjct: 311 RRFRGRLYVLPERRSLKDQILCWDPAEKLTLPDG 344


>gi|83859796|ref|ZP_00953316.1| hypothetical protein OA2633_07344 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852155|gb|EAP90009.1| hypothetical protein OA2633_07344 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 427

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 104/188 (55%), Gaps = 11/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +  SGG DS  LL AL +   D     +   A+ VDH LR  + +E    +D    L 
Sbjct: 5   LALGYSGGGDSTALLHALKACFPD-----VALHALIVDHSLRPESAEEAADNADYARDLG 59

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
               ++ W + +      AAAR+AR+AL++   + +  +L+   HT DD++ET+ MR+ R
Sbjct: 60  AEPHILRWSSPRKNQ---AAARQARHALLAGACEGLGVSLLCLGHTLDDRIETLRMRANR 116

Query: 142 DYAEKGM-GLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
               + + G++ +  + ++    NL ++RP L  RR+++R++L +    W +DPSN D +
Sbjct: 117 KGGWRTLTGMTALDASPIWPEGRNLTVARPLLEMRRDELRTYLRRIKARWVDDPSNDDAQ 176

Query: 199 FERVRVRR 206
           FER+R+R+
Sbjct: 177 FERIRLRQ 184


>gi|312952663|ref|ZP_07771527.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102]
 gi|310629451|gb|EFQ12734.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102]
 gi|315153553|gb|EFT97569.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0031]
          Length = 497

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVIAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYDFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|315660323|ref|ZP_07913176.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus lugdunensis M23590]
 gi|315494612|gb|EFU82954.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus lugdunensis M23590]
          Length = 430

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 33/250 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI++AVS G DSM LL AL  +  D      K + + V+H LRE + +E R+    C + 
Sbjct: 13  HIVLAVSTGVDSMCLLYALTHLYRD---TYRKLTCLHVNHGLREESIEEERFFQTYCEQH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++H V S K       +   +R+ RY         +NA +++TAH  DDQ
Sbjct: 70  QLSYDIKHLDLSHLVASGK------SIQNDSRQMRYQWFDYKMHELNADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET++ R     A +  +G+S +     Y     I RP L+  ++DIR F    ++ + E
Sbjct: 124 LETIFYRLFSGRATRSRLGMSYLTAREQYK----ICRPLLQSHKQDIRYFQQVHHVPFYE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDI------DLHALYLKMKKFQDLRV-KVNNAVAMLIPKYL 242
           D SN  +++ R  +R R + +I      D+  L LK+K + D ++ ++ N ++  I  Y+
Sbjct: 180 DCSNHINKYVRNDIRNRLIPEINDNEQLDVEQL-LKLKAWHDAQMEQLENKISRFIQDYV 238

Query: 243 TV-HMRSIIA 251
            + H  ++I 
Sbjct: 239 NMNHNHTMIT 248


>gi|330443788|ref|YP_004376774.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58]
 gi|328806898|gb|AEB41071.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58]
          Length = 318

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 99/201 (49%), Gaps = 21/201 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL      L+  SGGSDS+ L   L S+       KI F+A+ VDH  RE +++E +
Sbjct: 16  FFSSLDRKKSYLLGFSGGSDSLFLFYVLKSL-------KINFTAVHVDHGWRECSREEAK 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG---LMAAAREARYALISEHAKTINATLIMTAHTF 128
            + + C R +I  S +  + S  + G   L  AAR+ARYA   +     N + +  AH  
Sbjct: 69  ALKEFCHREKI--SYIGHRLSPEEKGERDLENAARKARYAFFYQLCVQQNFSGVFLAHHA 126

Query: 129 DDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           +DQ ET+  R       +G  LS   GM  +  Y   + + RP L   +  + S L +  
Sbjct: 127 NDQAETLLKR-----VLEGAHLSNLKGMTVSSFYQ-GMQLLRPLLHIPKARLMSLLHREK 180

Query: 186 ISWCEDPSNTDDRFERVRVRR 206
           IS+  D +N D+R+ R R+R+
Sbjct: 181 ISYISDETNEDERYLRARMRK 201


>gi|297538819|ref|YP_003674588.1| tRNA(Ile)-lysidine synthetase [Methylotenera sp. 301]
 gi|297258166|gb|ADI30011.1| tRNA(Ile)-lysidine synthetase [Methylotenera sp. 301]
          Length = 456

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 10/201 (4%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
            F  R L    H+L+A+SGG DS    + LH + + +   + +  A+ V H L   A   
Sbjct: 28  HFLSRYLKPNQHVLLALSGGLDST---VLLHLLAAAKQTIRFELHAMHVHHGLSPNADAW 84

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARY-ALISEHAKTINATLIMTAHT 127
             +    C  L +   VV  + +   + G+ AAAR+ RY AL       I    ++TAH 
Sbjct: 85  ADFCMQQCQLLNVPIKVVRVQLDLNAKQGIEAAARQLRYEALFDFKVSGIAPDFVVTAHH 144

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ ++  R     G G+ G+      D +  + RP L   R+ ++ +  Q NI 
Sbjct: 145 QDDQAETLLLQLFR-----GAGVKGLASMGCIDESRRLMRPLLDISRQTLQEYAEQNNIQ 199

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           WC D SN + ++ER  VR  V
Sbjct: 200 WCNDESNDNTQYERNFVRHDV 220


>gi|228950612|ref|ZP_04112747.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229077353|ref|ZP_04210023.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
 gi|228705950|gb|EEL58266.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
 gi|228809087|gb|EEM55571.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 480

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  ++K     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++R+V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  + N+    DPSN  + + R R+R++V
Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYV 214


>gi|206972582|ref|ZP_03233525.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
 gi|206732484|gb|EDZ49663.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
          Length = 476

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  ++K     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++R+V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  + N+    DPSN  + + R R+R++V
Sbjct: 180 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYV 210


>gi|161506859|ref|YP_001576813.1| putative cell cycle protein [Lactobacillus helveticus DPC 4571]
 gi|160347848|gb|ABX26522.1| putative cell cycle protein [Lactobacillus helveticus DPC 4571]
          Length = 431

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA S G DSM LL  L ++  +  F   K  A   +H LR  +++E + +   CS   
Sbjct: 32  LLVAASSGPDSMALLDMLKNLQDNAHF---KLMAAHFNHQLRADSEEESKLLKKYCSENH 88

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +  W K  +P+ G+ AAAR ARYA +++ AK  NA  ++TAH  DD LE + ++  
Sbjct: 89  VPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENILLKFI 148

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + M    M   +     + + RP L   + ++  +  +  I +  D +N  D   
Sbjct: 149 RSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQADETM 205

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 206 RNRLRHHV 213


>gi|190571198|ref|YP_001975556.1| tRNA(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018598|ref|ZP_03334406.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|254764824|sp|B3CLY6|TILS_WOLPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|190357470|emb|CAQ54904.1| trna(ile)-lysidine synthase (ec 6.3.4.-) (trna(ile)-lysidine
           synthetase) (trna(ile)-2-lysyl-cytidine synthase)
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995549|gb|EEB56189.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 430

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 12/202 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLRETAKDEVRYV 73
           S  +   I VAVSGG DS   ++ LH + +     K+    A++V+H LR  ++ E  ++
Sbjct: 13  SFAFHNQIAVAVSGGVDS---IVLLHLMTNWAKKNKLSLPIALTVNHGLRSESQKEADFI 69

Query: 74  SDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 L    S +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ 
Sbjct: 70  ISYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKCLLVAHHKDDQA 129

Query: 133 ETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ET  +R      E+G G+ G+   D   +   ++I RP L   R +I  +     + W E
Sbjct: 130 ETFLLR-----LERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIERYAKLHQLRWIE 184

Query: 191 DPSNTDDRFERVRVRRFVRDID 212
           D SN D ++ R   R  ++  D
Sbjct: 185 DRSNYDLKYRRTLYRNLLKASD 206


>gi|94496969|ref|ZP_01303543.1| ATPase [Sphingomonas sp. SKA58]
 gi|94423645|gb|EAT08672.1| ATPase [Sphingomonas sp. SKA58]
          Length = 314

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 14/182 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DSM LL    S    R       +A++VDH LR  + DE   V+  C    I 
Sbjct: 32  IAVSGGPDSMALLCLAASAFPGR------VAAVTVDHGLRRESADEAALVARWCVAHGIE 85

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H  +   ++     + A AR  RY L+     +     IMTAH  DDQLET+ MR  R  
Sbjct: 86  HVTLP-ADATVTGNVQAWARTTRYRLMEAWRASHAIDWIMTAHHADDQLETLVMRLNR-- 142

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G G+ G+    +  ++  + RP L  R+  +++F+ +  + + +DPSN D RF+R  
Sbjct: 143 ---GSGIGGLAG--VRAVSGRVIRPLLGERKAMLQAFVDREGLPYVQDPSNRDRRFDRAT 197

Query: 204 VR 205
           +R
Sbjct: 198 LR 199


>gi|323465808|gb|ADX69495.1| tRNA(Ile)-lysidine synthase (TRNA(Ile)-lysidinesynthetase)
           [Lactobacillus helveticus H10]
          Length = 418

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA S G DSM LL  L ++  +  F   K  A   +H LR  +++E + +   CS   
Sbjct: 19  LLVAASSGPDSMALLDMLKNLQDNAHF---KLMAAHFNHQLRADSEEESKLLKKYCSENH 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +  W K  +P+ G+ AAAR ARYA +++ AK  NA  ++TAH  DD LE + ++  
Sbjct: 76  VPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENILLKFI 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + M    M   +     + + RP L   + ++  +  +  I +  D +N  D   
Sbjct: 136 RSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQADETM 192

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 193 RNRLRHHV 200


>gi|229074125|ref|ZP_04207172.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
 gi|228709019|gb|EEL61145.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
          Length = 480

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  ++K     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +      V+    + Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  + N+    DPSN  + + R R+R++V
Sbjct: 184 VNYCNELNLIPRIDPSNKKEVYTRNRLRKYV 214


>gi|260584480|ref|ZP_05852227.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633]
 gi|260157998|gb|EEW93067.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633]
          Length = 450

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 6/185 (3%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DSM LL +   +   + F  ++FS + + H LR+ + +E   V + C+   I
Sbjct: 21  LLAVSGGVDSMVLLESFFKL--QKKFPTLQFSVVHIHHHLRKESDEEEEMVRNFCNERSI 78

Query: 83  AHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  V  W+    Q  G+   AR+ RY  + E  K   A  ++ AH  DDQ ETV M+  R
Sbjct: 79  SIEVYHWEQGFEQRVGIEEKARKFRYQKLEESMKKNKARYVVVAHHADDQAETVLMKLTR 138

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +  G++GM     +     I RPFL   +ED+  +     I + ED SN    + R
Sbjct: 139 GSTIE--GIAGMKSIRPFSEGYLI-RPFLTVDKEDLYEYASIHQIPFKEDSSNQSLEYTR 195

Query: 202 VRVRR 206
            R R+
Sbjct: 196 NRFRK 200


>gi|238796629|ref|ZP_04640136.1| tRNA(Ile)-lysidine synthase [Yersinia mollaretii ATCC 43969]
 gi|238719607|gb|EEQ11416.1| tRNA(Ile)-lysidine synthase [Yersinia mollaretii ATCC 43969]
          Length = 437

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 88/183 (48%), Gaps = 6/183 (3%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LV  SGG DS  +L+ L   + D+   ++K  AI + H L   A D V++    C R +I
Sbjct: 12  LVGFSGGLDS-SVLLHLLVCIRDQLIPELKVRAIHIHHGLNPLADDWVKHCQQQCERWQI 70

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              VV         G+ AAAR ARY   S H       +++TA   DDQ ET  +  +R 
Sbjct: 71  PLEVVRVSIDPRHNGIEAAARTARYQAFSSHLAA--NEVLLTAQHLDDQCETFLLALKRG 128

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLS M   + +  +  + RP L   RE + S+   + + W ED SN DDRF+R 
Sbjct: 129 SGPA--GLSAMAARMPFAHSQ-LLRPLLTFSREMLESYARTQQLQWIEDDSNQDDRFDRN 185

Query: 203 RVR 205
            +R
Sbjct: 186 FLR 188


>gi|260102340|ref|ZP_05752577.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus helveticus DSM 20075]
 gi|260083849|gb|EEW67969.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus helveticus DSM 20075]
          Length = 418

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 7/188 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA S G DSM LL  L ++  +  F   K  A   +H LR  +++E + +   CS   
Sbjct: 19  LLVAASSGPDSMALLDMLKNLQDNAHF---KLMAAHFNHQLRADSEEESKLLKKYCSENH 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +  W K  +P+ G+ AAAR ARYA +++ AK  NA  ++TAH  DD LE + ++  
Sbjct: 76  VPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENILLKFI 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + M    M   +     + + RP L   + ++  +  +  I +  D +N  D   
Sbjct: 136 RSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQADETM 192

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 193 RNRLRHHV 200


>gi|309750178|gb|ADO80162.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae R2866]
          Length = 430

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 152/327 (46%), Gaps = 24/327 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A+  V++  D+C +L
Sbjct: 20  LIALSGGLDST-VLLSLFAKLCQKQPHLPPLSVRAIHIHHGLSPNAESWVQHCQDLCDQL 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIPLIIERVQVDKT-NGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  + ++  +  ++W  D SN D+R++
Sbjct: 136 RGSGLQGLG-AMQQRSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +  I      I N  
Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337
           R  + L++T+   +L    L  E++T+
Sbjct: 308 RYQDSLYLTKPFSDLTKYCLKLEKSTL 334


>gi|75761780|ref|ZP_00741716.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898817|ref|ZP_04063100.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
 gi|228905860|ref|ZP_04069758.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
 gi|228963164|ref|ZP_04124334.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|74490730|gb|EAO54010.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228796549|gb|EEM43987.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228853800|gb|EEM98559.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
 gi|228860842|gb|EEN05219.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
          Length = 480

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 184 VDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237

Query: 232 NAVAML 237
              A L
Sbjct: 238 EDEAYL 243


>gi|228937366|ref|ZP_04100013.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970252|ref|ZP_04130912.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976822|ref|ZP_04137235.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
 gi|228782918|gb|EEM31083.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
 gi|228789487|gb|EEM37406.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822324|gb|EEM68305.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 480

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 184 VDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237

Query: 232 NAVAML 237
              A L
Sbjct: 238 EDEAYL 243


>gi|238763959|ref|ZP_04624915.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638]
 gi|238697776|gb|EEP90537.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638]
          Length = 461

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 86/186 (46%), Gaps = 8/186 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L D+    +   AI + H L   A   VR+    C + 
Sbjct: 24  HVLVGFSGGLDS-SVLLHLLVCLRDKLIPDLMIRAIHIHHGLNPLADTWVRHCQQQCEQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   VV        TG+ AAAR  RY   + H    N  L+ TA   DDQ ET  +  +
Sbjct: 83  NIPLEVVRVNIDARHTGIEAAARTVRYQAFASHLAA-NEVLV-TAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R       GLS M   + +    LW  RP L   RE + ++   + + W ED SN DDRF
Sbjct: 141 RGSGPA--GLSAMAAKMPFAHSQLW--RPLLAFSRETLENYAQVQRLQWIEDDSNQDDRF 196

Query: 200 ERVRVR 205
           +R  +R
Sbjct: 197 DRNFLR 202


>gi|326937855|gb|AEA13751.1| cell cycle protein MesJ [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 430

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 180 VDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233

Query: 232 NAVAML 237
              A L
Sbjct: 234 EDEAYL 239


>gi|312901065|ref|ZP_07760354.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470]
 gi|311291811|gb|EFQ70367.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470]
          Length = 497

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM L   +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALFTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ M+  R
Sbjct: 113 LTYYETRWEDPEKQRNLEAKARTFRYDFFKEVMEIEGAAVLMTAHHLDDQAETILMKLIR 172

Query: 142 DYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G   S   G+ +   +     I RP L   +E++  F  ++   + ED +N  + 
Sbjct: 173 -----GTNFSHSAGIKERRPFATGELI-RPLLIYPKEELYQFAQRQAFVYFEDETNQTNE 226

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 227 YLRNRLRNQV 236


>gi|301155698|emb|CBW15166.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae T3T1]
          Length = 430

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 9/196 (4%)

Query: 11  FFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
            F   +  PA+ +L+A SGG DS  LL  +  +   R    +   AI + H L   A   
Sbjct: 6   LFQAQIPTPANKLLIAFSGGLDSTALLSLVKKLSKKRP--HLSLRAIHIHHGLSPNADTW 63

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +   +C +  I   +V     +   G+ A AREARY  IS H +      ++TAH  +
Sbjct: 64  TAHCQQLCKQFAIP-LIVEKVKVEMHDGIEAGAREARYQAISTHIQP--DEYLVTAHHLN 120

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET ++  +R    +G+G +   ++ L+ +   I RP L   R ++  ++ Q N+SW 
Sbjct: 121 DQTETFFLALKRGAGLQGLG-AMQKESQLFGMP--ILRPLLSFSRNELEDYVQQENLSWV 177

Query: 190 EDPSNTDDRFERVRVR 205
           ED SN D+ +ER  +R
Sbjct: 178 EDESNQDNHYERNFLR 193


>gi|145640364|ref|ZP_01795948.1| DNA mismatch repair protein [Haemophilus influenzae R3021]
 gi|145274950|gb|EDK14812.1| DNA mismatch repair protein [Haemophilus influenzae 22.4-21]
          Length = 430

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 152/341 (44%), Gaps = 32/341 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  D+C +L
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSPNADSWAKHCQDLCDQL 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  + ++  +  ++W  D SN D+R++
Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +  I      I N  
Sbjct: 193 ----RNFLRNEILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAKNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
           R  + L++T+   +L    L  E+ T+        NL D L
Sbjct: 308 RYQDSLYLTKRFSDLTKCCLKLEQNTL--------NLPDDL 340


>gi|303256929|ref|ZP_07342943.1| tRNA(Ile)-lysidine synthase [Burkholderiales bacterium 1_1_47]
 gi|302860420|gb|EFL83497.1| tRNA(Ile)-lysidine synthase [Burkholderiales bacterium 1_1_47]
          Length = 478

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 6/190 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P +++VA SGG DS  LL A+ S L  +S+G+I  +A+ V H L + A +   +  +   
Sbjct: 47  PINVIVAFSGGLDSSVLLYAV-SQLKGKSYGEI--TAVHVHHGLSKHANEWAEFCEERAK 103

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  +   +          G  A AR+ RY ++ E A+   A  I+TAH  DDQLET  ++
Sbjct: 104 KCGVRFVLRKVTVPSGGAGFEAEARQLRYEVLEEEARKSAADAILTAHHLDDQLETFLIQ 163

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GL+ M   +  D    I RP L  +R ++  F   R I W ED SN D +
Sbjct: 164 WMRGSGP--AGLAAMPPLLRKD-GCTIMRPLLGFQRTELERFAEIRGIKWVEDESNEDMK 220

Query: 199 FERVRVRRFV 208
           + R  +R  +
Sbjct: 221 YLRNAIRHNI 230


>gi|218895199|ref|YP_002443610.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
 gi|218545400|gb|ACK97794.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
          Length = 476

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 180 VDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233

Query: 232 NAVAML 237
              A L
Sbjct: 234 EDEAYL 239


>gi|329113827|ref|ZP_08242598.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001]
 gi|326696837|gb|EGE48507.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001]
          Length = 435

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 10/199 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG DS+ L           SF +    A+ VDH LR  +  E          + 
Sbjct: 47  VAMAVSGGGDSLCLAWLA-------SFWRKNLLALVVDHGLRPESGLEAHQTLARLQAMN 99

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   ++   + K  + +   AREARYA +    +    T ++  H  DD  ETV+MR   
Sbjct: 100 IPAQLLVLTDLKKGSAMAHRAREARYARLIAACQEHGCTDLLLGHQADDLAETVWMRQNS 159

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+   G   T+  D+ L   RP L   R+ +R+ L Q ++ W +DPSN D R ER
Sbjct: 160 SSGPEGLAGMGWI-TVRPDIRL--IRPMLGFSRQALRNTLRQAHVEWVDDPSNQDQRAER 216

Query: 202 VRVRRFVRDIDLHALYLKM 220
           VR+R  ++  D  A + ++
Sbjct: 217 VRLRYLLQKNDQRAHFWQL 235


>gi|238754787|ref|ZP_04616138.1| tRNA(Ile)-lysidine synthase [Yersinia ruckeri ATCC 29473]
 gi|238706947|gb|EEP99313.1| tRNA(Ile)-lysidine synthase [Yersinia ruckeri ATCC 29473]
          Length = 447

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 92/201 (45%), Gaps = 6/201 (2%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M   P   ++     L    H+LV  SGG DS  LL AL  +L DR    +   AI V H
Sbjct: 1   MNHDPHPIIKHIASQLQGARHLLVGFSGGVDSSVLLHAL-MMLRDRLLPDLVIRAIYVHH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A     +    C R  IA  +V  +     TG+ AAAR ARY       +  +  
Sbjct: 60  GLNPLADSWGEHCQHQCQRWNIALEMVRVQIDPSDTGIEAAARTARYQAFK--TRLASDE 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TA   DDQ ET  +  +R     G  LS M   + +  + +I RP L   R+++  +
Sbjct: 118 VLLTAQHLDDQCETFLLALKRGSGPAG--LSAMAALMPF-AHSYIIRPLLALSRQELERY 174

Query: 181 LLQRNISWCEDPSNTDDRFER 201
                ++W ED SN DDRF+R
Sbjct: 175 ADDYQLTWIEDDSNQDDRFDR 195


>gi|170738632|ref|YP_001767287.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46]
 gi|226695542|sp|B0UGN1|TILS_METS4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|168192906|gb|ACA14853.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46]
          Length = 344

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 5/115 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DS  L+    + L  R    +     +VDH LR  + +E   V+ +  RL + 
Sbjct: 32  LAVSGGPDSTALM-GCAAALPPR----VPVLVATVDHGLRPESGEEAAGVAALAGRLGLP 86

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           H +++W+  KP+T L  AAR ARY L+   A+   A  I+TAHT DDQ ETV MR
Sbjct: 87  HRILTWRGEKPRTRLQEAARAARYDLLLGLAREAGAGAILTAHTLDDQAETVLMR 141


>gi|289551692|ref|YP_003472596.1| tRNA(Ile)-lysidine synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289181223|gb|ADC88468.1| tRNA(Ile)-lysidine synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 430

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 33/250 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI++AVS G DSM LL AL  +  D      K + + V+H LRE + +E R+    C + 
Sbjct: 13  HIVLAVSTGVDSMCLLYALTHLYRD---TYRKLTCLHVNHGLREESIEEERFFQTYCEQH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++H V S K       +   +R+ RY         +NA +++TAH  DDQ
Sbjct: 70  QLSYDIKHLDLSHLVASGK------SIQNDSRQMRYQWFDYKMHELNADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET++ R     A +  +G+S +     Y     I RP L+  ++DIR F    ++ + E
Sbjct: 124 LETIFYRLFSGRATRSRLGMSYLTAREQYK----ICRPLLQSHKQDIRYFQQVHHVPFYE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDI------DLHALYLKMKKFQDLRV-KVNNAVAMLIPKYL 242
           D SN  +++ R  +R R + +I      D+  L LK+K + D ++ ++ N  +  I  Y+
Sbjct: 180 DCSNHINKYVRNDIRNRLIPEINDNEQLDVEQL-LKLKAWHDAQMEQLENKTSRFIQDYV 238

Query: 243 TV-HMRSIIA 251
            + H  ++I 
Sbjct: 239 NMNHNHTMIT 248


>gi|227878371|ref|ZP_03996326.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus crispatus
           JV-V01]
 gi|256844414|ref|ZP_05549900.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256849198|ref|ZP_05554631.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus crispatus MV-1A-US]
 gi|262047214|ref|ZP_06020172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus crispatus MV-3A-US]
 gi|227862050|gb|EEJ69614.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus crispatus
           JV-V01]
 gi|256613492|gb|EEU18695.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256713974|gb|EEU28962.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus crispatus MV-1A-US]
 gi|260572459|gb|EEX29021.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus crispatus MV-3A-US]
          Length = 417

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA S G DSM LL  L ++    SF      A   DH LR  +  EV  + + C++ +
Sbjct: 19  LLVAASAGPDSMALLDMLVNLQKQLSFTVF---AAHFDHQLRADSSYEVEVLQNYCAQKK 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I      W K+ +PQTG+ AAAREARY  ++  A +     ++TAH  DD LE + ++  
Sbjct: 76  ICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENILLKFI 135

Query: 141 RDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R    + M     +  M   +L        RP L   ++++  +  +R I +  D +NT+
Sbjct: 136 RSGNPEEMNSLQDIGSMHGVVLL-------RPLLAYSKQELLEYDQEREIDYVIDSTNTE 188

Query: 197 DRFERVRVRRFV 208
           D   R R+R  V
Sbjct: 189 DETVRNRLRHHV 200


>gi|194467678|ref|ZP_03073665.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri 100-23]
 gi|194454714|gb|EDX43611.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri 100-23]
          Length = 464

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 103/211 (48%), Gaps = 17/211 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E  RFF         ++VAVS G DSM LL  L  + S     + +     ++H 
Sbjct: 8   FERHLERSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLPSK---NRPQIIVAHMNHQ 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR+ ++ E R++   C R  +  +V  W ++  PQTG+  AAR+ARY    E  K   A 
Sbjct: 61  LRKQSQLEERFIRQYCKRNDLKLAVAHWPQDLHPQTGVENAARQARYHFFREVMKDNQAR 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDI 177
           +++TAH  +D  ET+ M+  R     G  LS   G+ D   +     I RP L   ++ +
Sbjct: 121 ILITAHHQNDLAETMLMKMTR-----GGQLSQLVGIRDRRPFASGTLI-RPLLPFSKQQL 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           + + LQ ++ W ED +N D   +R R R  +
Sbjct: 175 KKYALQHHLKWYEDKTNKDLNIQRNRFRHAI 205


>gi|153815236|ref|ZP_01967904.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756]
 gi|317502308|ref|ZP_07960477.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847495|gb|EDK24413.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756]
 gi|316896264|gb|EFV18366.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 488

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 88/192 (45%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           ++  VSGG+DS+ LL+ L S+     FG  +     V+HCLR  A D +  YV  +C  L
Sbjct: 29  VIAGVSGGADSVCLLLTLCSLRE--KFG-FEVKVCHVNHCLRGAAADADEEYVKKLCGEL 85

Query: 81  ----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               R+    V     K +     A RE R     +       T I TAH  DDQ ETV 
Sbjct: 86  GVECRVFRKEVELIAEKRKQSCEEAGREVRREAFEQMCAENGGTKIATAHHRDDQAETVL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G+ G+C  +    N    RP L   R+ I S+L +R I W  D +N +
Sbjct: 146 LNIAR-----GTGIRGLCGIVPVRDNRI--RPLLSLTRDRIESYLRERGIVWRVDATNEE 198

Query: 197 DRFERVRVRRFV 208
           D + R R+R  V
Sbjct: 199 DDYTRNRIRHKV 210


>gi|331089912|ref|ZP_08338804.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330403144|gb|EGG82705.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 512

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 88/192 (45%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           ++  VSGG+DS+ LL+ L S+     FG  +     V+HCLR  A D +  YV  +C  L
Sbjct: 53  VIAGVSGGADSVCLLLTLCSLRE--KFG-FEVKVCHVNHCLRGAAADADEEYVKKLCGEL 109

Query: 81  ----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               R+    V     K +     A RE R     +       T I TAH  DDQ ETV 
Sbjct: 110 GVECRVFRKEVELIAEKRKQSCEEAGREVRREAFEQMCAENGGTKIATAHHRDDQAETVL 169

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G+ G+C  +    N    RP L   R+ I S+L +R I W  D +N +
Sbjct: 170 LNIAR-----GTGIRGLCGIVPVRDNRI--RPLLSLTRDRIESYLRERGIVWRVDATNEE 222

Query: 197 DRFERVRVRRFV 208
           D + R R+R  V
Sbjct: 223 DDYTRNRIRHKV 234


>gi|229846491|ref|ZP_04466599.1| cell cycle protein [Haemophilus influenzae 7P49H1]
 gi|229810584|gb|EEP46302.1| cell cycle protein [Haemophilus influenzae 7P49H1]
          Length = 430

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 148/327 (45%), Gaps = 24/327 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A   V++  ++C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHALSPNADCWVQHCQNLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIPLIIERVQVDKA-NGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  +  +  Q  ++W  D SN D+RF+
Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMQ--ILRPLLGFTRPQLEDYAQQEKLNWVTDESNEDNRFD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +    A    I N  
Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLYQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337
           R  + L++T+   +L    L  E+ T+
Sbjct: 308 RYQDCLYLTKRFSDLTKCTLKLEQNTL 334


>gi|295692143|ref|YP_003600753.1| cell cycle protein [Lactobacillus crispatus ST1]
 gi|295030249|emb|CBL49728.1| Cell cycle protein [Lactobacillus crispatus ST1]
          Length = 417

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA S G DSM LL  L ++    SF      A   DH LR  +  EV  + + C++ +
Sbjct: 19  LLVAASAGPDSMALLDMLVNLQKQLSFTVF---AAHFDHQLRADSSYEVEVLQNYCAQKK 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I      W K+ +PQTG+ AAAREARY  ++  A +     ++TAH  DD LE + ++  
Sbjct: 76  ICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENILLKFI 135

Query: 141 RDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R    + M     +  M   +L        RP L   ++++  +  +R I +  D +NT+
Sbjct: 136 RSGNPEEMNSLQDIGSMHGVVLL-------RPLLAYSKQELLEYDQEREIDYVIDSTNTE 188

Query: 197 DRFERVRVRRFV 208
           D   R R+R  V
Sbjct: 189 DETVRNRLRHHV 200


>gi|312978414|ref|ZP_07790156.1| tRNA(Ile)-lysidine synthase [Lactobacillus crispatus CTV-05]
 gi|310894757|gb|EFQ43829.1| tRNA(Ile)-lysidine synthase [Lactobacillus crispatus CTV-05]
          Length = 417

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA S G DSM LL  L ++    SF      A   DH LR  +  EV  + + C++ +
Sbjct: 19  LLVAASAGPDSMALLDMLVNLQKQLSFTVF---AAHFDHQLRADSSYEVEVLQNYCAQKK 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I      W K+ +PQTG+ AAAREARY  ++  A +     ++TAH  DD LE + ++  
Sbjct: 76  ICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENILLKFI 135

Query: 141 RDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R    + M     +  M   +L        RP L   ++++  +  +R I +  D +NT+
Sbjct: 136 RSGNPEEMNSLQDIGSMHGVVLL-------RPLLAYSKQELLEYDQEREIDYVIDSTNTE 188

Query: 197 DRFERVRVRRFV 208
           D   R R+R  V
Sbjct: 189 DETVRNRLRHHV 200


>gi|293380361|ref|ZP_06626432.1| tRNA(Ile)-lysidine synthetase [Lactobacillus crispatus 214-1]
 gi|290923044|gb|EFD99975.1| tRNA(Ile)-lysidine synthetase [Lactobacillus crispatus 214-1]
          Length = 417

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA S G DSM LL  L ++    SF      A   DH LR  +  EV  + + C++ +
Sbjct: 19  LLVAASAGPDSMALLDMLVNLQKQLSFTVF---AAHFDHQLRADSSYEVEVLQNYCAQKK 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I      W K+ +PQTG+ AAAREARY  ++  A +     ++TAH  DD LE + ++  
Sbjct: 76  ICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENILLKFI 135

Query: 141 RDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R    + M     +  M   +L        RP L   ++++  +  +R I +  D +NT+
Sbjct: 136 RSGNPEEMNSLQDIGSMHGVVLL-------RPLLAYSKQELLEYDQEREIDYVIDSTNTE 188

Query: 197 DRFERVRVRRFV 208
           D   R R+R  V
Sbjct: 189 DETVRNRLRHHV 200


>gi|229824541|ref|ZP_04450610.1| hypothetical protein GCWU000282_01885 [Catonella morbi ATCC 51271]
 gi|229785912|gb|EEP22026.1| hypothetical protein GCWU000282_01885 [Catonella morbi ATCC 51271]
          Length = 487

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 95/190 (50%), Gaps = 7/190 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGG DSM +L  ++ +   R +  ++      +H LR  + +E   + ++ +   
Sbjct: 24  VVLAVSGGVDSMVMLRLMNELNQLRQYNHLQLVVAHFNHKLRPESDNEAVAIKEIVAEYG 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             +    W      T + A AR+ARY   +E  +T  A ++MTAH  +D  ET  MR  R
Sbjct: 84  CIYFATEW-GEPAATNVEAQARDARYQFFAEVIRTTEADVLMTAHHLNDVAETFLMRMTR 142

Query: 142 DYAEKGM-GLSG-----MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             + +G+ G+ G     M D   + +   I RPF+   + ++ ++  + N+++ ED SN 
Sbjct: 143 GTSIRGLQGIRGCYQRLMSDPSGHTVMPTIIRPFIGVTKAELEAYAEKFNVTYFEDASNY 202

Query: 196 DDRFERVRVR 205
            D F R R R
Sbjct: 203 MDHFVRNRFR 212


>gi|85372930|ref|YP_456992.1| ATPase [Erythrobacter litoralis HTCC2594]
 gi|84786013|gb|ABC62195.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 319

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 94/196 (47%), Gaps = 21/196 (10%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VAVSGG DS+ LL+  ++ L  R        A ++DH LR  A DE   V  +C RL + 
Sbjct: 18  VAVSGGPDSLALLLLANTALPGRVV------AATIDHGLRPEAADEAAMVGGLCERLGVL 71

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H  V        T     AR+ARY  +        A    TAH  DDQ ET+ MR  R  
Sbjct: 72  HHTVEVALEPGNT--QDRARKARYEALCRCFGEQGADTFATAHHADDQAETLLMRFNR-- 127

Query: 144 AEKGMGLSGMCD----TILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
              G GLSG+      T+L          + RP L  RRE++   +    ++  +DPSN 
Sbjct: 128 ---GSGLSGLAGIRARTVLLSPEPLGEYLVVRPLLEWRREELAGIVADAGLAPVQDPSNV 184

Query: 196 DDRFERVRVRRFVRDI 211
           D R++RV+VRR + D+
Sbjct: 185 DTRYDRVQVRRALADL 200


>gi|205371981|ref|ZP_03224799.1| cell cycle protein MesJ [Bacillus coahuilensis m4-4]
          Length = 456

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 104/210 (49%), Gaps = 25/210 (11%)

Query: 9   VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           VR F+   R L+   H+LV VSGG+DSM LL  L ++  ++   ++K + ++VDH LR E
Sbjct: 7   VRQFIDKERLLMGEEHVLVGVSGGADSMMLLSMLMALQKEK---ELKITVVTVDHMLRGE 63

Query: 65  TAKDEVRYVSDVCSR---------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
            +  ++ +V   C +         + + H++ + K S     L   AR+ RY    E  K
Sbjct: 64  ESYQDLEFVRAYCEQHGISFVGKQVNVKHALTAQKGS-----LQQVARDMRYGAFLETLK 118

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            + AT++      DDQ+ETV M   R    KG G+    D   Y L     RP L   ++
Sbjct: 119 AVKATVLALGQHGDDQVETVLMGLTRGGTSKGYGIPITRDFHGYPL----IRPLLPLTKD 174

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           DI SF+    I + EDPSN  + + R R R
Sbjct: 175 DIYSFVQHHRIPYREDPSNQKEDYTRNRFR 204


>gi|119471144|ref|ZP_01613676.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Alteromonadales bacterium TW-7]
 gi|119445800|gb|EAW27082.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Alteromonadales bacterium TW-7]
          Length = 434

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 95/188 (50%), Gaps = 17/188 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  +H +   +   K+K SAI V+H L E A D   +  ++C  L I 
Sbjct: 27  VALSGGVDSVVLLHVMHVL--KQEMPKLKVSAIYVNHGLSEYANDWQAFCQNLCVELDIP 84

Query: 84  HSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            +      S + +T L A AREARY  + E +     ++I+     +DQ+ET  +R +R 
Sbjct: 85  FNTAQVTISPQTRTSLEAQAREARYKALDELSAP--QSVILLGQHLNDQIETFLLRLKRG 142

Query: 143 YAEKGMG-LSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              KG+G +  M +     I Y       RP L   R DI  F    NI+   D SNTD+
Sbjct: 143 SGLKGLGAMQAMRELQSGRICY-------RPLLSITRSDIEHFATAFNIAHITDDSNTDE 195

Query: 198 RFERVRVR 205
           RF+R  +R
Sbjct: 196 RFDRNFLR 203


>gi|229119726|ref|ZP_04248988.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201]
 gi|228663751|gb|EEL19329.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201]
          Length = 480

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L  ++E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVKKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  +  I    DPSN  + + R R+R++V
Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|229113738|ref|ZP_04243174.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3]
 gi|228669735|gb|EEL25141.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3]
          Length = 283

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKECSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +      V+    + Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  + N+    DPSN  + + R R+R++V
Sbjct: 184 VNYCNELNLIPRIDPSNKKEVYTRNRLRKYV 214


>gi|299536712|ref|ZP_07050022.1| tRNA(Ile)-lysidine synthase [Lysinibacillus fusiformis ZC1]
 gi|298727826|gb|EFI68391.1| tRNA(Ile)-lysidine synthase [Lysinibacillus fusiformis ZC1]
          Length = 468

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 93/197 (47%), Gaps = 19/197 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSR 79
           H+L+AVSGG DSM LL   H  +  +    I+  A+ VDH LR  A  E R +V   C  
Sbjct: 22  HLLIAVSGGVDSMALL---HYFIQTQEQWNIQVEAVHVDHMLRGEASSEDRAFVQKYCD- 77

Query: 80  LRIAHSVVSWKNSKPQTGLMAAA--------REARYALISEHAKTINATLIMTAHTFDDQ 131
              A+SV       P   ++A          R  RY    E  +  NA  ++TAH  DDQ
Sbjct: 78  ---ANSVYLHAKEIPIPTILAQENGNTQLICRRERYQFFKEVLQKTNANKLVTAHHADDQ 134

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LE+V M   ++     M   G+    ++     I RPFL   + +I  +LL++ + + ED
Sbjct: 135 LESVLMALTKNATMNSM--QGIRPQRIFGGKSLI-RPFLTVTKSEIGEYLLRKGLDYRED 191

Query: 192 PSNTDDRFERVRVRRFV 208
            SN+ D + R R R  V
Sbjct: 192 ASNSKDTYVRNRFRHHV 208


>gi|229844434|ref|ZP_04464574.1| pyridoxine kinase [Haemophilus influenzae 6P18H1]
 gi|229812683|gb|EEP48372.1| pyridoxine kinase [Haemophilus influenzae 6P18H1]
          Length = 430

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 146/340 (42%), Gaps = 30/340 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   R     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   ++         G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IP-LIIERVQVDKTNGIEAVAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG+G +    ++L+ +   I RP L   R  +  +  +  ++W  D SN D+R++ 
Sbjct: 137 GSGLKGLG-AMQQQSVLFGMP--ILRPLLGFTRPQLEDYAQKEKLNWITDESNGDNRYD- 192

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
              R F+R+  L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 193 ---RNFLRNKILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248

Query: 262 TLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDR 311
              F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI R
Sbjct: 249 LCQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIRR 308

Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
             + L++T+   +L    L  E+ T+        NL D L
Sbjct: 309 YQDSLYLTKPFSDLTKYCLKLEQNTL--------NLPDDL 340


>gi|126667577|ref|ZP_01738547.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Marinobacter sp. ELB17]
 gi|126628003|gb|EAZ98630.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Marinobacter sp. ELB17]
          Length = 212

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 101/203 (49%), Gaps = 12/203 (5%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +R   R L     + +A SGG DS  LL+ L + ++  S   I  SA+ ++H L+  A +
Sbjct: 16  LRDLARQLPQHDRLCIAFSGGLDS-SLLLHLFAAITPAS---IALSALHINHQLQPNAAE 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
              +  DVC+RL +   VVS      ++   GL  AAR ARY +  ++ +     L++ A
Sbjct: 72  VDAFCRDVCARLSVPLRVVSVTVPVKAEGVGGLEQAARAARYGVFEQYLRADE--LLLLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQLETV  R  R     G  L+GM  T        ++RP L   R  + ++     
Sbjct: 130 HHGDDQLETVLFRLFRGSGVAG--LAGMPFTRALCARA-LARPLLEFSRAQLEAWAEGAG 186

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           + W EDPSN+D RF+R  +R  V
Sbjct: 187 LPWMEDPSNSDQRFDRNYLRNSV 209


>gi|217076557|ref|YP_002334273.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
           africanus TCF52B]
 gi|226695550|sp|B7IFR8|TILS_THEAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|217036410|gb|ACJ74932.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
           africanus TCF52B]
          Length = 427

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 92/188 (48%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVAVSGG DS  LL  L  V   + + K      +VDH +R+ +K+EV++V ++   L 
Sbjct: 24  ILVAVSGGVDSSVLLNLLARV---QEYFKFSIFCATVDHGIRKESKEEVKFVYNMAQSLN 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   +    V     + +  +  AAR+ RY  ++E AK INA  + TAH  +D  ETV  
Sbjct: 81  VECFIKEFDVPLYAKENKLSIEEAARKLRYKFLNEIAKKINANKVATAHNLNDLAETVLF 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R       G+ GM        N  I RP L   R++I  F  +  I +  D +N D 
Sbjct: 141 RLARGTGP--FGIYGMKPR-----NGNIIRPLLFFERKEIEQFATENKIPFVVDKTNFDT 193

Query: 198 RFERVRVR 205
           ++ R  +R
Sbjct: 194 KYTRNFIR 201


>gi|229094785|ref|ZP_04225791.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29]
 gi|228688653|gb|EEL42525.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29]
          Length = 480

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKECSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +      V+    + Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  + N+    DPSN  + + R R+R++V
Sbjct: 184 VNYCNEINLIPRIDPSNKKEVYTRNRLRKYV 214


>gi|229067828|ref|ZP_04201146.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
 gi|229176664|ref|ZP_04304069.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
 gi|229188349|ref|ZP_04315398.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
 gi|228595148|gb|EEK52918.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
 gi|228606831|gb|EEK64247.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
 gi|228715312|gb|EEL67170.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
          Length = 480

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++R+V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  + N+    DPSN  + + R R+R++V
Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYV 214


>gi|328956577|ref|YP_004373963.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4]
 gi|328672901|gb|AEB28947.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4]
          Length = 467

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 19/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK--FSAISVDHCLRETAKDEVRYVSDVCSR 79
           +L+AVSGG DSM L+      L  R    I+  F  + V+H LR+ + +E +++S  C+ 
Sbjct: 23  LLLAVSGGVDSMVLV-----DLIQRLPNAIRPWFGVVHVNHQLRQASMEEEKFLSQYCAS 77

Query: 80  LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            RI      W   + Q  G+ AAARE RYA   E  K   AT ++T H  DDQ+ET+ MR
Sbjct: 78  NRIPFFFKRWPVEEHQVEGVEAAAREFRYAFFHEVLKEQQATHLLTGHHGDDQMETILMR 137

Query: 139 SQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     G  L  +         Y   L  +RP L   +E +  +  +R++S+ ED SN
Sbjct: 138 LVR-----GGQLESIAGIKKHRTFYGKQL--TRPLLDYSKETLYQYSQERSLSFYEDESN 190

Query: 195 TDDRFERVRVR 205
               + R R R
Sbjct: 191 NSLEYTRNRYR 201


>gi|291551165|emb|CBL27427.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Ruminococcus torques
           L2-14]
          Length = 482

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 20/217 (9%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M    +E +  ++R    +     I++ VSGG+DS+ LL+AL S+     F   +     
Sbjct: 1   MMDKRLEKIENYIRQYHMIEKGDRIVIGVSGGADSVCLLMALCSLQEKLGF---QVLVCH 57

Query: 58  VDHCLR--ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALIS 111
           V+H LR  E A+DE  YV  +C ++++     H  V     K +  L  A R  R     
Sbjct: 58  VNHELRGEEAAQDEA-YVEMLCHKMQVPFFAFHENVELIAKKRKESLEEAGRYVRRQAFE 116

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +  +    T I TAH  +D  ET+ +   R     G GL G+C  I      WI RP L 
Sbjct: 117 QLCREQGGTKIATAHHSNDNAETMLLNMAR-----GTGLRGLC-GIRPVYGKWI-RPLLE 169

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             RE+I  +L    IS+C D +N +D + R R+R  +
Sbjct: 170 LSREEIEQWLKDCEISYCIDETNQEDEYTRNRIRHHI 206


>gi|148827606|ref|YP_001292359.1| cell cycle protein [Haemophilus influenzae PittGG]
 gi|226695540|sp|A5UGS0|TILS_HAEIG RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|148718848|gb|ABQ99975.1| cell cycle protein [Haemophilus influenzae PittGG]
          Length = 430

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 143/326 (43%), Gaps = 22/326 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +   +I    AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLCQKQPHLQILSLRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   ++         G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G +    ++L+ +   I RP L   R  +  +  +  ++W  D SN D+RF+ 
Sbjct: 137 GSGLQGLG-AMQQQSVLFGMQ--ILRPLLGFTRPQLEDYAQKEKLNWITDESNKDNRFD- 192

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
              R F+R+  L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 193 ---RNFLRNEILPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248

Query: 262 TLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDR 311
              F  Y L    A     +   Q+ +P  R + +++   +F K        +   +I R
Sbjct: 249 LCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKIIRR 308

Query: 312 RANFLWITRAVRNLPTLILYPEETTV 337
             + L++T+   +L    L  E+ T+
Sbjct: 309 YQDRLYLTKPFSDLTKYCLKLEQNTL 334


>gi|261867859|ref|YP_003255781.1| tRNA(Ile)-lysidine synthase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413191|gb|ACX82562.1| tRNA(Ile)-lysidine synthase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 448

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 8/188 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             L+  SGG DS  LL        +R   + +  AI + H L   A     +   +C  L
Sbjct: 23  QFLIGFSGGLDSTALLALFAKHRENRP--RFQLRAIHIHHGLSPNADAWAAHCQKICRHL 80

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   +   K  + Q G+ A ARE RY  I++H   +    + TAH   DQ ET ++  +
Sbjct: 81  NIPLLIQPVK-VRLQNGIEAGARETRYEAIAQH--ILPEEWLATAHHQQDQTETFFLALK 137

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +   ++I+Y +   I RP L   R+ + +F+ Q+ ++W ED SN D++++
Sbjct: 138 RGSGLQGLG-AMQANSIVYGVP--IFRPLLNFSRQQLMAFVQQQQLTWVEDESNEDNQYD 194

Query: 201 RVRVRRFV 208
           R  +R  V
Sbjct: 195 RNFLRNVV 202


>gi|297568349|ref|YP_003689693.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924264|gb|ADH85074.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 347

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 98/189 (51%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V  SGG DSM LL AL ++ +   F  +   A+ VDH LR E +++E + ++ V + L
Sbjct: 24  VVVGTSGGPDSMALLYALKTLSAAMHFNLL---AVYVDHGLRPEESREEEQLMAAVAAAL 80

Query: 81  RIA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I      V+ ++   Q GL    AARE RY   ++ A    A  I  AHT DDQ E + 
Sbjct: 81  EIPWRGGRVAVRDYARQQGLSLEHAARELRYRFFAQVAAETGAAKIAVAHTADDQAEELL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +R  R  A  G  LSGM           I RP L   + ++ ++L QRNI++  D SN D
Sbjct: 141 LRLLRGTARGG--LSGMAPLA----RGRIIRPLLAVSKAEVLAYLAQRNIAFARDSSNQD 194

Query: 197 DRFERVRVR 205
            RF R RVR
Sbjct: 195 LRFVRNRVR 203


>gi|269958448|ref|YP_003328235.1| putative ATPase [Anaplasma centrale str. Israel]
 gi|269848277|gb|ACZ48921.1| putative ATPase [Anaplasma centrale str. Israel]
          Length = 447

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 6/187 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VAVSGG DSM LL  +   +  ++    +   ++V+H  R  A  E R V      L + 
Sbjct: 27  VAVSGGVDSMTLLNLVG--MFHKTQATSRPIVLTVNHGFRAEADYETRCVQKRALELGLE 84

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             ++ W    P       ARE RY L+ +     +   ++TAH   DQ ETV M  +R  
Sbjct: 85  CRILRWGGYIPSKS-QEIAREIRYGLLHQWCVEHSVKFLLTAHNKSDQAETVLMHLERGS 143

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G  LSGM +  ++  N+ I RP L   R++I  +  Q  + W EDPSN D ++ R  
Sbjct: 144 GVDG--LSGMHERSVFG-NITICRPLLNFTRQEILQYATQERLFWVEDPSNQDSKYRRTF 200

Query: 204 VRRFVRD 210
            R  + +
Sbjct: 201 FRNLIAE 207


>gi|330718517|ref|ZP_08313117.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc fallax KCTC 3537]
          Length = 442

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 8/187 (4%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V++L  P  ++VAVSGG DS+ LL AL      ++  +++F    V++ LR  + ++  +
Sbjct: 9   VQALQLPDKVIVAVSGGVDSVVLLDAL-----IKTQPQVEFIVAHVNYHLRPQSDNDAHF 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V+++  +  +    V W+    Q  +  AAR+ RY    E A       I+ AH  +DQ 
Sbjct: 64  VAEIAKKYHVVLRKVDWQGI-DQGSVEEAARDFRYCFFEELANEYATNTILVAHHANDQA 122

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ ++  R    K   LSGM  T      + I RP L   ++ I+ +  Q  + WCED 
Sbjct: 123 ETILLKLVR--GGKLSQLSGMQPTRQVSKTVQIVRPLLPFSKQRIKLYAQQHRLEWCEDS 180

Query: 193 SNTDDRF 199
           +N D  +
Sbjct: 181 TNADSAY 187


>gi|322436275|ref|YP_004218487.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321164002|gb|ADW69707.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 351

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 10/193 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           +  AVSGG+DS+ +L+ + +         +  SA+ V+H LR  E+  DE  +V+ +C  
Sbjct: 15  VCCAVSGGADSVAMLLLVCAANGGSKGLGLGVSAVHVNHGLRGAESDGDE-GFVAALCEG 73

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L +  ++    V+ + +     +  AARE RY           A +++TAHT DDQ ETV
Sbjct: 74  LGVPLTIERADVAGRVAARGETVEEAAREVRYECFRRLIAEGRANVVLTAHTLDDQAETV 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            M+  R    +G+   G    ++      + RP L  RR ++  FL  +   W ED SN 
Sbjct: 134 LMKLLRGAWTEGL---GGISPVVEVPGGRVVRPVLGVRRGELVEFLKAKGQGWREDSSNA 190

Query: 196 DDRFERVRVRRFV 208
           D+ F R R+R  V
Sbjct: 191 DEAFTRNRLRHTV 203


>gi|330860915|emb|CBX71195.1| tRNA(Ile)-lysidine synthase [Yersinia enterocolitica W22703]
          Length = 461

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 87/186 (46%), Gaps = 8/186 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L D+    +   AI + H L   A   V++    C + 
Sbjct: 24  HVLVGFSGGLDS-SVLLHLLVCLRDQLIPDLMIRAIHIHHGLNPLADSWVKHCQQQCEQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   VV         G+ AAAR  RY   + H  T N  L+ TA   DDQ ET  +  +
Sbjct: 83  KIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLAT-NEVLV-TAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R     G  LS M   + +    LW  RP L   RE + ++   + + W ED SN DDRF
Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQLW--RPLLVFSRETLENYAQVQRLQWIEDDSNQDDRF 196

Query: 200 ERVRVR 205
           +R  +R
Sbjct: 197 DRNFLR 202


>gi|332160611|ref|YP_004297188.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606911|emb|CBY28409.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664841|gb|ADZ41485.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 461

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 87/186 (46%), Gaps = 8/186 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L D+    +   AI + H L   A   V++    C + 
Sbjct: 24  HVLVGFSGGLDS-SVLLHLLVCLRDQLIPDLMIRAIHIHHGLNPLADSWVKHCQQQCEQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   VV         G+ AAAR  RY   + H  T N  L+ TA   DDQ ET  +  +
Sbjct: 83  KIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLAT-NEVLV-TAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R     G  LS M   + +    LW  RP L   RE + ++   + + W ED SN DDRF
Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQLW--RPLLVFSRETLENYAQVQRLQWIEDDSNQDDRF 196

Query: 200 ERVRVR 205
           +R  +R
Sbjct: 197 DRNFLR 202


>gi|160933737|ref|ZP_02081125.1| hypothetical protein CLOLEP_02598 [Clostridium leptum DSM 753]
 gi|156867614|gb|EDO60986.1| hypothetical protein CLOLEP_02598 [Clostridium leptum DSM 753]
          Length = 320

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 91/190 (47%), Gaps = 18/190 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++  VSGG+DSM LL  L S   D  + ++K +A  V+HCLR  E  +DE  +V   C R
Sbjct: 21  VVAGVSGGADSMALLHVLQSRRKD--WPELKVTAAHVNHCLRGAEADRDE-EHVRRYCQR 77

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I   V    V  + +K + GL A  R  RY      A      +I TAHT  D  ETV
Sbjct: 78  EGIPLEVLKIDVREEAAKRKLGLEACGRAVRYEFFRRLAG--ENGVIATAHTLSDLAETV 135

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +     +  +G GL G+C       N  I RP + C R +I  +  +  I +  D +N 
Sbjct: 136 LL-----HLTRGTGLKGLCGIPPVREN--IVRPLIDCSRREIEDYCREHKIPYVTDSTNL 188

Query: 196 DDRFERVRVR 205
           + R+ R +VR
Sbjct: 189 EARYSRNKVR 198


>gi|123443466|ref|YP_001007439.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090427|emb|CAL13295.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 461

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 86/186 (46%), Gaps = 8/186 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L D+    +   AI + H L   A   V++    C + 
Sbjct: 24  HVLVGFSGGLDS-SVLLHLLVCLRDQLIPDLMIRAIHIHHGLNPLADSWVKHCQQQCEQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   VV         G+ AAAR  RY   + H  T N  L+ TA   DDQ ET  +  +
Sbjct: 83  KIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLAT-NEVLV-TAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R     G  LS M   + +    LW  RP L   RE +  +   + + W ED SN DDRF
Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQLW--RPLLTFSRETLEHYAQVQRLQWIEDDSNQDDRF 196

Query: 200 ERVRVR 205
           +R  +R
Sbjct: 197 DRNFLR 202


>gi|145628768|ref|ZP_01784568.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21]
 gi|144979238|gb|EDJ88924.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21]
          Length = 397

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 152/333 (45%), Gaps = 36/333 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           LVA+SGG DS  +L++L + L  +      +   AI + H L   A    ++  D+C + 
Sbjct: 20  LVALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ + ++  RP L   R  +  +  +  ++W  D SN D+R++
Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMPIF--RPLLGFTRPQLEDYAQKEKLNWITDESNEDNRYD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK------------VNNAVAMLIPKYLTVHMR- 247
               R F+R+  L  L  +   F DL V+            +N+ ++    ++  +  + 
Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQF 247

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304
            +    Q  L   +TLL   L         Q+ +P  R + +++   +F K        +
Sbjct: 248 KLCQFRQYSLAKQTTLLRMWL------AENQLEMPSKRQLTQLINDVVFAKEEANPQFQL 301

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
              VI R  + L++T+   +L    L  E+ T+
Sbjct: 302 VNKVIRRYQDSLYLTKPFSDLTKCTLKLEQNTL 334


>gi|229100858|ref|ZP_04231666.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28]
 gi|228682558|gb|EEL36627.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28]
          Length = 283

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +      V+    + Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  + N+    DPSN  + + R R+R++V
Sbjct: 184 VKYCNELNLIPRIDPSNKKEVYTRNRLRKYV 214


>gi|153854745|ref|ZP_01995979.1| hypothetical protein DORLON_01977 [Dorea longicatena DSM 13814]
 gi|149752652|gb|EDM62583.1| hypothetical protein DORLON_01977 [Dorea longicatena DSM 13814]
          Length = 473

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 18/210 (8%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E VR +V+    L    H++  VSGG+DS+ LL  L  +  +  FG    + + + H LR
Sbjct: 14  ERVRAYVKKYHMLQEKDHVIAGVSGGADSVCLLFMLVKLQKEMRFG---LTVVHIHHGLR 70

Query: 64  -ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            E+A  +  YV  +C +L +     H  V     + +  L  A R  R  +  E     N
Sbjct: 71  GESADVDENYVRALCEKLDVELLAFHEDVGRYAKEQKLTLEEAGRNVRRHIFEEVCHRKN 130

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I  AH  +D  ET+     R     G GL G+      D   +I RP L  RR++I 
Sbjct: 131 GTRIALAHHQNDNAETLLWNLSR-----GCGLKGIGGISPVD-GKYI-RPLLGVRRQEIE 183

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            +L + NI +C D +N +D + R R+R  V
Sbjct: 184 EYLKENNIDYCTDETNLEDHYTRNRLRNHV 213


>gi|228919014|ref|ZP_04082394.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840663|gb|EEM85924.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 480

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  ++K     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  + N+    DPSN  + + R R+R++V
Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYV 214


>gi|87198103|ref|YP_495360.1| tRNA(Ile)-lysidine synthetase-like [Novosphingobium aromaticivorans
           DSM 12444]
 gi|123491176|sp|Q2GC97|TILS_NOVAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|87133784|gb|ABD24526.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 326

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 7/184 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG DS+ L++ +  V          F   +VDH LR  +  E   V+ +C    
Sbjct: 28  VCLAVSGGPDSLALMLLMQEV------APRDFCVATVDHGLRAESAAEAAMVAGLCEMRG 81

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           IA+  +   +    + +   AR+ARYA +++ A+    + ++TAH  DDQ ET+ MR  R
Sbjct: 82  IAYHTLR-LDLAGGSAVQERARKARYAALADLARRDGLSAVVTAHHADDQAETLVMRLNR 140

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+       ++     + + RP L  RR ++ + +    ++   DPSN D R+ER
Sbjct: 141 GAGLRGLAGMRAASSVPGAGEVRLLRPLLGWRRAELVALVEDAGLAPVLDPSNHDHRYER 200

Query: 202 VRVR 205
           VR+R
Sbjct: 201 VRIR 204


>gi|314932731|ref|ZP_07840101.1| tRNA(Ile)-lysidine synthase [Staphylococcus caprae C87]
 gi|313654561|gb|EFS18313.1| tRNA(Ile)-lysidine synthase [Staphylococcus caprae C87]
          Length = 428

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 17/221 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           AHI+VAVS G DSM LL   HS+L+         + + V+H LR  + +E  ++++ C +
Sbjct: 12  AHIIVAVSTGIDSMTLL---HSLLNQYRDTYKTLTCVHVNHGLRAQSVEEEIFLNEYCQK 68

Query: 80  LRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +I   V     SK       +   AR  RY    E  + +NA +++TAH  DDQLET+ 
Sbjct: 69  NQIKLYVKHLDLSKIVDKGNSIQNEARRLRYQWFGEVIRDLNADVLLTAHHLDDQLETIL 128

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R     + +     GM D   Y+ +  + RP L   ++DI ++  +  + + ED SN D
Sbjct: 129 YRVLSGRSTRSS--LGMSDISNYE-DYLVCRPLLNIYKKDIINYQEKYQVPYFEDSSNQD 185

Query: 197 DRFERVRVR-RFVRDI------DLHALYLKMKKFQDLRVKV 230
            ++ R  +R R +  I      D H L LK+K++ D  +++
Sbjct: 186 TKYVRNDIRQRIIPSIDNNPFLDSHHL-LKLKEWHDNELQL 225


>gi|223044415|ref|ZP_03614448.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           capitis SK14]
 gi|222442204|gb|EEE48316.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           capitis SK14]
          Length = 428

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 17/221 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           AHI+VAVS G DSM LL   HS+L+         + + V+H LR  + +E  ++++ C +
Sbjct: 12  AHIIVAVSTGIDSMTLL---HSLLNQYRDTYKTLTCVHVNHGLRAQSVEEEIFLNEYCQK 68

Query: 80  LRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +I   V     SK       +   AR  RY    E  + +NA +++TAH  DDQLET+ 
Sbjct: 69  NQIKLYVKHLDLSKIVDKGNSIQNEARRLRYQWFGEVIRDLNADVLLTAHHLDDQLETIL 128

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R     + +     GM D   Y+ +  + RP L   ++DI ++  +  + + ED SN D
Sbjct: 129 YRVLSGRSTRSS--LGMSDISNYE-DYLVCRPLLNIYKKDIINYQEKYQVPYFEDSSNQD 185

Query: 197 DRFERVRVR-RFVRDI------DLHALYLKMKKFQDLRVKV 230
            ++ R  +R R +  I      D H L LK+K++ D  +++
Sbjct: 186 TKYVRNDIRQRIIPSIDNNPFLDSHHL-LKLKEWHDNELQL 225


>gi|149174369|ref|ZP_01852996.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797]
 gi|148846914|gb|EDL61250.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797]
          Length = 354

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 92/195 (47%), Gaps = 13/195 (6%)

Query: 19  PAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDE-VRYV 73
           PA   L+AVSGG+DSM LL AL   L+  S   I    + +   +H LR TA DE   ++
Sbjct: 36  PAQRTLIAVSGGADSMALLRAL-KCLAQSSESLIPPDGLVIAHLNHGLRGTASDEDAEWL 94

Query: 74  SDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
              C RL +    V+ K   N  P +GL    R ARY  ++  A     T I  AHT DD
Sbjct: 95  KQECRRLSLP--CVTEKQELNQGPDSGLEEQCRTARYGFLTRVAIAEQCTQIAVAHTLDD 152

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV     R       GL G+  T +    L + RP L+  RE++  FL      +  
Sbjct: 153 QAETVLHHIIRGTG--ITGLRGIPQTRVLQQGLHLIRPLLQISREEVVEFLNVCGQEYRN 210

Query: 191 DPSNTDDRFERVRVR 205
           D SN D  F R R+R
Sbjct: 211 DESNADTSFTRNRIR 225


>gi|238787216|ref|ZP_04631015.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641]
 gi|238724478|gb|EEQ16119.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641]
          Length = 461

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV  SGG DS  +L+ L   L D+   ++K  AI + H L   A   V +    C + R
Sbjct: 25  VLVGFSGGLDS-SVLLHLLVCLRDQLIPELKIRAIHIHHGLNPQADSWVMHCQQQCKQWR 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   VV        +G+ AAAR ARY   S H       +++TA   DDQ ET  +  +R
Sbjct: 84  IPLEVVRVSIDARHSGIEAAARTARYQAFSSHLAA--DEVLLTAQHLDDQCETFLLALKR 141

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GLS M   + +  +  + RP L   RE + ++   + + W ED SN DDRF+R
Sbjct: 142 GSGPA--GLSAMAAKMPFAHSQ-LLRPLLAFSREILENYARAQQLQWIEDDSNQDDRFDR 198

Query: 202 VRVR 205
             +R
Sbjct: 199 NFLR 202


>gi|320451012|ref|YP_004203108.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
 gi|320151181|gb|ADW22559.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
          Length = 514

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 30/184 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           +++AVSGG DS+ L    H V      G +      +DH LR  +  ++ +V  +  RL 
Sbjct: 26  LVLAVSGGGDSVALA---HLVKRAGREGVV----AHLDHALRPESGGDLLFVKALAERLG 78

Query: 81  --------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                    +A     W+ +     L A ARE RYA +   A+ + A  I+TAHT DDQ 
Sbjct: 79  YPFYAERVEVARVAREWREN-----LEAVAREIRYAFLHRVAREVKAKAILTAHTLDDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV ++  +  A +G+G+         +    + RP L  RRE++R++L     +W EDP
Sbjct: 134 ETVLLKLLQGTA-RGLGIR--------EKEGLVVRPLLAFRREELRAYLKALGEAWREDP 184

Query: 193 SNTD 196
           SN D
Sbjct: 185 SNQD 188


>gi|228989271|ref|ZP_04149264.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442]
 gi|228770481|gb|EEM19052.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442]
          Length = 480

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V VSGG DS+ LL  L   L  R   K+K     VDH  R + + +++++V ++C ++
Sbjct: 29  IVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDHMFRGDESYEDLQFVENLCRKI 85

Query: 81  RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +    +    S+   Q G+ A  AARE RYA +    K  +A  +   H  DDQ+ET+ 
Sbjct: 86  GVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGDDQMETIL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    K  G +G+     +    ++ RP L   +E+I ++  +  ++   DPSN  
Sbjct: 146 MRLVRGSTPK--GYAGIAVKRPFHSG-YVIRPLLAVTKEEINAYCKRLGVTPRMDPSNEK 202

Query: 197 DRFERVRVRRFV 208
           + + R R+R++V
Sbjct: 203 EVYTRNRLRKYV 214


>gi|52424859|ref|YP_087996.1| MesJ protein [Mannheimia succiniciproducens MBEL55E]
 gi|61216475|sp|Q65UE9|TILS_MANSM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52306911|gb|AAU37411.1| MesJ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 426

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 20/206 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A SGG DS  LL     +  +R     +F AI + H L   A     +  ++C +  
Sbjct: 17  ILIAFSGGLDSTALLALCKKLQENRP--HFQFRAIHIHHGLSPNADKWALHCENICRQFS 74

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V   +  K   G+ A AREARY  I+ H       ++ TAH  +DQ ET  +  +R
Sbjct: 75  IPLIVEKVRVDK-SNGIEAGAREARYHAIANHLNI--DEVLATAHHLNDQTETFLLALKR 131

Query: 142 DYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                G G+ G+     +++++  NL I RP L+  R  +  ++  + I+W ED SN D+
Sbjct: 132 -----GSGVQGLSAMQKESVVF--NLPIFRPLLQFTRAQLEDYVKSQKINWIEDESNEDN 184

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKF 223
            ++    R F+R+I L  +  +   F
Sbjct: 185 SYD----RNFLRNIILPKMKTRWAHF 206


>gi|238751432|ref|ZP_04612924.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380]
 gi|238710299|gb|EEQ02525.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380]
          Length = 456

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 89/185 (48%), Gaps = 6/185 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L D+   ++   AI + H L   A   V++    C + 
Sbjct: 24  HVLVGFSGGLDS-SVLLHLLVCLRDQFIPELMIRAIHIHHGLNPRADSWVKHCQQQCEQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +A  VV        +G+ AAAR ARY   + H  T    +++TA   DDQ ET  +  +
Sbjct: 83  GVALEVVRVTIDTRDSGIEAAARNARYQAFASHLAT--NEVLLTAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLS M     +  +  + RP L   RE + ++   + + W ED SN DDRF+
Sbjct: 141 RGSGPA--GLSAMAAKRPFAHSQ-LLRPLLAFSRETLENYARAQQLQWIEDDSNQDDRFD 197

Query: 201 RVRVR 205
           R  +R
Sbjct: 198 RNFLR 202


>gi|16272353|ref|NP_438566.1| cell cycle protein [Haemophilus influenzae Rd KW20]
 gi|260580533|ref|ZP_05848361.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Haemophilus influenzae RdAW]
 gi|1175240|sp|P44689|TILS_HAEIN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1573375|gb|AAC22063.1| cell cycle protein (mesJ) [Haemophilus influenzae Rd KW20]
 gi|260092875|gb|EEW76810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Haemophilus influenzae RdAW]
          Length = 430

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 151/341 (44%), Gaps = 32/341 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  D+C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLCQKQPHLPPLSIRAIHIHHGLSPNADSWAKHCQDLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG+G +    ++L+ +   I RP L   R  + ++  +  ++W  D SN D+R++
Sbjct: 136 RGSGLKGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +  I      I N  
Sbjct: 193 ----RNFLRNEILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
           R  + L++T+   +L    L  E+ T+        NL D L
Sbjct: 308 RYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDL 340


>gi|309972437|gb|ADO95638.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae R2846]
          Length = 430

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 152/333 (45%), Gaps = 36/333 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A+  V++  D+C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNAESWVQHCQDLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  + ++  +  ++W  D SN D+R++
Sbjct: 136 RGSGLQGLG-AMQQRSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK------------VNNAVAMLIPKYLTVHMR- 247
               R F+R+  L  L  +   F DL V+            +N+ ++    K+  +  + 
Sbjct: 193 ----RNFLRNEILPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAKHCQIKNQF 247

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304
            +    Q  L   + LL   L         Q+ +P  R + +++   +F K        +
Sbjct: 248 KLCQFRQYSLAKQTALLRMWL------AENQLEMPSKRQLTQLINDVVFAKEEANPQFQL 301

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
              VI R  + L++T+   +L    L  E+  +
Sbjct: 302 VNKVIRRYQDSLYLTKPFSDLTKCTLKLEQNML 334


>gi|228995454|ref|ZP_04155124.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17]
 gi|228764315|gb|EEM13192.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17]
          Length = 480

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V VSGG DS+ LL  L   L  R   K+K     VDH  R + + +++++V ++C ++
Sbjct: 29  IVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDHMFRGDESYEDLQFVENLCRKI 85

Query: 81  RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +    +    S+   Q G+ A  AARE RYA +    K  +A  +   H  DDQ+ET+ 
Sbjct: 86  GVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGDDQMETIL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    K  G +G+     +    ++ RP L   +E+I ++  +  ++   DPSN  
Sbjct: 146 MRLVRGSTPK--GYAGIAVKRPFHSG-YVIRPLLAVTKEEINAYCKRLGVTPRMDPSNEK 202

Query: 197 DRFERVRVRRFV 208
           + + R R+R++V
Sbjct: 203 EVYTRNRLRKYV 214


>gi|94967093|ref|YP_589141.1| tRNA(Ile)-lysidine synthetase-like [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549143|gb|ABF39067.1| tRNA(Ile)-lysidine synthetase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 464

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 8/187 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR--- 79
           VAVSGG+DS+ LL  L   L  RS   I  S + + H +R    D + ++V+D+  +   
Sbjct: 23  VAVSGGADSVALLRGL---LELRSELGIALSVVHLHHGIRGAEADADEQFVADLAGQFDL 79

Query: 80  -LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L +    V   +S+ +  L  AAR+ RYA      ++     + TAHT DDQ ETV +R
Sbjct: 80  SLHLERVDVPSHSSQEKLSLETAARDLRYAFFRRLLESSACDKVATAHTLDDQAETVLLR 139

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +G+           +L   I RP L   R ++ ++L   N  W ED +NTD +
Sbjct: 140 ILRGTGTRGLAAIPPFRDASPELAACIVRPLLGTERTEVETYLKSLNQPWREDSTNTDPK 199

Query: 199 FERVRVR 205
             R R+R
Sbjct: 200 HLRNRIR 206


>gi|297566040|ref|YP_003685012.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
 gi|296850489|gb|ADH63504.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
          Length = 524

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 24/193 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCLRETAKDEVRYVSDVCSR 79
           ++ AVSGG DS+ LL  L +         + F AI    DH LR ++ +E  +V  +   
Sbjct: 28  VVAAVSGGGDSVALLYLLKA---------LGFEAIVAHFDHALRPSSAEEAVWVQHLAEA 78

Query: 80  L----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L     +    V     + +  L A ARE RYA +S  AK      I+TAHT DDQ ETV
Sbjct: 79  LGYPCEVTRVEVQRVAQRKKRNLEATARELRYAFLSRVAKKYRTEAILTAHTQDDQAETV 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R     G G +    T +      + RP L   R ++R +L  +  SW EDP+N 
Sbjct: 139 LLQLVR-----GTGRA----TGIRKRQGRVVRPLLGFTRAELRGYLRAKGASWLEDPTNQ 189

Query: 196 DDRFERVRVRRFV 208
           D   +R  +R  V
Sbjct: 190 DPALDRNYLRHEV 202


>gi|148825315|ref|YP_001290068.1| pyridoxine kinase [Haemophilus influenzae PittEE]
 gi|226695539|sp|A5UA84|TILS_HAEIE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|148715475|gb|ABQ97685.1| pyridoxine kinase [Haemophilus influenzae PittEE]
          Length = 430

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 24/327 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  D+C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEILVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  + ++  +  ++W  D SN D+RF+
Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNGDNRFD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +    A    I N  
Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337
           R  + L++T+   +L    L  E+ T+
Sbjct: 308 RYQDRLYLTKPFSDLTKYCLKLEQNTL 334


>gi|49476703|ref|YP_034416.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196036405|ref|ZP_03103802.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W]
 gi|196041776|ref|ZP_03109066.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99]
 gi|196047393|ref|ZP_03114606.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108]
 gi|218901265|ref|YP_002449099.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820]
 gi|225862116|ref|YP_002747494.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102]
 gi|301051801|ref|YP_003790012.1| cell cycle protein [Bacillus anthracis CI]
 gi|61216513|sp|Q6HPV4|TILS_BACHK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49328259|gb|AAT58905.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|195991035|gb|EDX55006.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W]
 gi|196021795|gb|EDX60489.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108]
 gi|196027396|gb|EDX66013.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99]
 gi|218539357|gb|ACK91755.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820]
 gi|225790908|gb|ACO31125.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102]
 gi|300373970|gb|ADK02874.1| cell cycle protein [Bacillus cereus biovar anthracis str. CI]
          Length = 476

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  +  I    DPSN  + + R R+R++V
Sbjct: 180 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|269302798|gb|ACZ32898.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 319

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 17/200 (8%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            F  SL      L+A+SGGSDS+ L      +L +R    + F+A+ +DH  R T+  E 
Sbjct: 16  LFFASLDVKKRYLLALSGGSDSLFLFY----LLKERG---VSFTAVHIDHGWRSTSAQEA 68

Query: 71  RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + + ++C+R  +   + +     +    L   AR+ RYA + E  + ++A  I  AH  +
Sbjct: 69  KELEELCAREGVPFVLYTLTAEEQGDKDLENQARKKRYAFLYESYRQLDAGGIFLAHHAN 128

Query: 130 DQLETVYMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           DQ ETV  R   S      K M      + +L      + RP L   +  ++  L  R I
Sbjct: 129 DQAETVLKRLLESAHLTNLKAMAERSYVEDVL------LLRPLLHIPKSSLKEALDARGI 182

Query: 187 SWCEDPSNTDDRFERVRVRR 206
           S+ +DPSN D+R+ R R+R+
Sbjct: 183 SYVQDPSNEDERYLRARMRK 202


>gi|22126993|ref|NP_670416.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM 10]
 gi|45442556|ref|NP_994095.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108806535|ref|YP_650451.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Antiqua]
 gi|108813098|ref|YP_648865.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516]
 gi|145598932|ref|YP_001163008.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides F]
 gi|149366937|ref|ZP_01888970.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CA88-4125]
 gi|162418463|ref|YP_001607754.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Angola]
 gi|165927115|ref|ZP_02222947.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939833|ref|ZP_02228373.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011914|ref|ZP_02232812.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211335|ref|ZP_02237370.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399756|ref|ZP_02305274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419749|ref|ZP_02311502.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425306|ref|ZP_02317059.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470891|ref|ZP_02335595.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis FV-1]
 gi|218928230|ref|YP_002346105.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CO92]
 gi|229837769|ref|ZP_04457929.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides A]
 gi|229840991|ref|ZP_04461150.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229843092|ref|ZP_04463242.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229903541|ref|ZP_04518654.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516]
 gi|270487322|ref|ZP_06204396.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM D27]
 gi|294503079|ref|YP_003567141.1| hypothetical protein YPZ3_0969 [Yersinia pestis Z176003]
 gi|61217402|sp|Q8ZH50|TILS_YERPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21960038|gb|AAM86667.1|AE013912_11 cell cycle protein [Yersinia pestis KIM 10]
 gi|45437421|gb|AAS62972.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776746|gb|ABG19265.1| hypothetical protein YPN_2938 [Yersinia pestis Nepal516]
 gi|108778448|gb|ABG12506.1| hypothetical protein YPA_0538 [Yersinia pestis Antiqua]
 gi|115346841|emb|CAL19727.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145210628|gb|ABP40035.1| hypothetical protein YPDSF_1650 [Yersinia pestis Pestoides F]
 gi|149290551|gb|EDM40627.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CA88-4125]
 gi|162351278|gb|ABX85226.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Angola]
 gi|165912236|gb|EDR30873.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921011|gb|EDR38235.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989180|gb|EDR41481.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207106|gb|EDR51586.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962490|gb|EDR58511.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050464|gb|EDR61872.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055706|gb|EDR65490.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229679311|gb|EEO75414.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516]
 gi|229689968|gb|EEO82027.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229697357|gb|EEO87404.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229704146|gb|EEO91158.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides A]
 gi|262361117|gb|ACY57838.1| hypothetical protein YPD4_0929 [Yersinia pestis D106004]
 gi|270335826|gb|EFA46603.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM D27]
 gi|294353538|gb|ADE63879.1| hypothetical protein YPZ3_0969 [Yersinia pestis Z176003]
 gi|320014196|gb|ADV97767.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 460

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 6/181 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L  +   ++   AI + H L   A   V++    C + 
Sbjct: 24  HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   VV       Q G+ AAAR ARY   S  A      +++TA   DDQ ET  +  +
Sbjct: 83  KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G  LS M   + +  +  + RP L   RE + ++   + + W ED SN DDRF+
Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQ-LLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 197

Query: 201 R 201
           R
Sbjct: 198 R 198


>gi|308171958|ref|YP_003918663.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7]
 gi|307604822|emb|CBI41193.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7]
          Length = 486

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 105/230 (45%), Gaps = 23/230 (10%)

Query: 6   IESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHC 61
           ++SV  F ++    A    I+  VSGG DSM LL  L     ++ FGK     A  VDH 
Sbjct: 15  VKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSML-----NKHFGKSSVIIAAHVDHQ 69

Query: 62  LRETAKDE-VRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116
            R +  +E +++V   C    I    V    S    K +    AAAR+ RY    +    
Sbjct: 70  FRGSESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFKDLMAK 129

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +  AH  DDQ+ET+ MR  +     G GL+GM     +   L I RPFL   +++
Sbjct: 130 HQAKFLALAHHGDDQVETMLMRLAK--GTLGAGLAGMQPVREFASGLLI-RPFLYAAKDE 186

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKM 220
           I  +  Q  +S+  D SNT D + R R R+ V         D+H ++ K+
Sbjct: 187 ILEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKV 236


>gi|157364389|ref|YP_001471156.1| tRNA(Ile)-lysidine synthetase [Thermotoga lettingae TMO]
 gi|166988068|sp|A8F7F8|TILS_THELT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157314993|gb|ABV34092.1| tRNA(Ile)-lysidine synthetase [Thermotoga lettingae TMO]
          Length = 447

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 134/289 (46%), Gaps = 31/289 (10%)

Query: 16  LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           L++P H +LVA+SGG DSM LL  L   L  R     +  A  ++H +RE A  + ++V 
Sbjct: 19  LIFPGHKVLVALSGGMDSMSLLNIL---LKLRQKLNCEIFAAHLNHMIRENAIRDEQFVY 75

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             C +  +   V  +   K     + G+   AR ARY  ++  A      LI  AH  +D
Sbjct: 76  SYCKKAGVKIFVERFDVPKFCADRKIGIEEGARAARYTFLNRIAHENGIDLIALAHNLND 135

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+  R  R     G GLSG+    L D N    RP L  +RE I +++ + NI + +
Sbjct: 136 LVETILYRIVR-----GTGLSGIVCMKLKDENKI--RPLLYFKREQIEAYIKRNNIPYVQ 188

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAMLIPKYLT 243
           D +N + ++ R  +R  +    + AL L     ++   +V+       N V  LI KY  
Sbjct: 189 DETNFNLKYSRNYIRHRI----VPALKLLNSDLENAFSQVHFSGMMLENHVKRLIKKYSE 244

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVM 291
              R    I  D  ++D   +  L++     C GQ+++   YR ++ V+
Sbjct: 245 RIFRCGKRIIFDSKDMDEFEIIELVKY----CAGQMNVDLNYRQIQLVV 289


>gi|30260254|ref|NP_842631.1| hypothetical protein BA_0062 [Bacillus anthracis str. Ames]
 gi|47525316|ref|YP_016665.1| hypothetical protein GBAA_0062 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183097|ref|YP_026349.1| hypothetical protein BAS0062 [Bacillus anthracis str. Sterne]
 gi|165872559|ref|ZP_02217191.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488]
 gi|167635086|ref|ZP_02393403.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442]
 gi|167641508|ref|ZP_02399756.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193]
 gi|170688892|ref|ZP_02880094.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465]
 gi|170707562|ref|ZP_02898015.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389]
 gi|177655625|ref|ZP_02936988.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174]
 gi|190569013|ref|ZP_03021914.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227812737|ref|YP_002812746.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684]
 gi|229602718|ref|YP_002864715.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248]
 gi|254682310|ref|ZP_05146171.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254735465|ref|ZP_05193173.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744633|ref|ZP_05202312.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Kruger B]
 gi|254756338|ref|ZP_05208367.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Vollum]
 gi|254762394|ref|ZP_05214236.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Australia
           94]
 gi|61216616|sp|Q81VX7|TILS_BACAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|30253575|gb|AAP24117.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Ames]
 gi|47500464|gb|AAT29140.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177024|gb|AAT52400.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711687|gb|EDR17232.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488]
 gi|167510493|gb|EDR85891.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193]
 gi|167529560|gb|EDR92310.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442]
 gi|170127558|gb|EDS96432.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389]
 gi|170667116|gb|EDT17877.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465]
 gi|172080036|gb|EDT65135.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174]
 gi|190559937|gb|EDV13921.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227005702|gb|ACP15445.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684]
 gi|229267126|gb|ACQ48763.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248]
          Length = 476

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  +  I    DPSN  + + R R+R++V
Sbjct: 180 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|300119157|ref|ZP_07056858.1| cell cycle protein [Bacillus cereus SJ1]
 gi|298723479|gb|EFI64220.1| cell cycle protein [Bacillus cereus SJ1]
          Length = 279

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  +  I    DPSN  + + R R+R++V
Sbjct: 180 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|51597300|ref|YP_071491.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis IP
           32953]
 gi|186896405|ref|YP_001873517.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|61217229|sp|Q667K7|TILS_YERPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51590582|emb|CAH22223.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186699431|gb|ACC90060.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis PB1/+]
          Length = 460

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 6/185 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L  +   ++   AI + H L   A   V++    C + 
Sbjct: 24  HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   VV       Q G+ AAAR ARY   S  A      +++TA   DDQ ET  +  +
Sbjct: 83  KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G  LS M   + +  +  + RP L   RE + ++   + + W ED SN DDRF+
Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQ-LLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 197

Query: 201 RVRVR 205
           R  +R
Sbjct: 198 RNFLR 202


>gi|46579870|ref|YP_010678.1| hypothetical protein DVU1459 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449286|gb|AAS95937.1| conserved domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234129|gb|ADP86983.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris RCH1]
          Length = 390

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 89/192 (46%), Gaps = 12/192 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H +VA+SGG+DS  LL+ LH +   R    +  SA+ VDH LR  +  E R     C  L
Sbjct: 64  HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 120

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I  +V    V    +  + G   A R+ARY L++    +  A  I T H   D  E V 
Sbjct: 121 GIPLAVHTLTVDELAAVWRVGTEEAGRKARYDLLAAALPSPAADWICTGHHLGDLAEDVL 180

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R      +G   +CD         I RP L   ++ + +FL    +SW EDPSN  
Sbjct: 181 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTEKDRLEAFLATLGVSWTEDPSNAS 235

Query: 197 DRFERVRVRRFV 208
           D + R R+R  V
Sbjct: 236 DTYLRNRMRHGV 247


>gi|329122279|ref|ZP_08250867.1| tRNA(Ile)-lysidine synthetase [Haemophilus aegyptius ATCC 11116]
 gi|327473840|gb|EGF19257.1| tRNA(Ile)-lysidine synthetase [Haemophilus aegyptius ATCC 11116]
          Length = 430

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 144/326 (44%), Gaps = 22/326 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   R     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDKT-NGIEAGAREARYQAIKKHLQT--QEMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G +    ++L+ +   I RP L   R  + ++  +  ++W  D SN D+RF+ 
Sbjct: 137 GSGLQGLG-AMQQRSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRFD- 192

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
              R F+R+  L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 193 ---RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAKHCQIKNQFK 248

Query: 262 TLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDR 311
              F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI R
Sbjct: 249 LCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIRR 308

Query: 312 RANFLWITRAVRNLPTLILYPEETTV 337
             + L++T+   +L    L  E+ T+
Sbjct: 309 YQDSLYLTKRFSDLTKYCLKLEQNTL 334


>gi|228912803|ref|ZP_04076451.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846863|gb|EEM91867.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 480

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  +  I    DPSN  + + R R+R++V
Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|118475834|ref|YP_892985.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam]
 gi|228931566|ref|ZP_04094473.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943870|ref|ZP_04106256.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089195|ref|ZP_04220477.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42]
 gi|229182458|ref|ZP_04309710.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1]
 gi|118415059|gb|ABK83478.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam]
 gi|228601038|gb|EEK58606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1]
 gi|228694158|gb|EEL47839.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42]
 gi|228815827|gb|EEM62062.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828118|gb|EEM73845.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 480

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  +  I    DPSN  + + R R+R++V
Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|89892946|ref|YP_516433.1| hypothetical protein DSY0200 [Desulfitobacterium hafniense Y51]
 gi|89332394|dbj|BAE81989.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 472

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 124/291 (42%), Gaps = 22/291 (7%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L+ P + IL AVSGG DS+ L   L   + D+   KI      V H +RE + DE + V
Sbjct: 12  QLIAPGSRILAAVSGGPDSVALAHILWRYIQDKQEQKITLVITHVHHGVREESDDEEKMV 71

Query: 74  SDVCSRLRIA---HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTF 128
            ++     I    H   S KN     G     AARE RYA   E  +  N TL+ TAH  
Sbjct: 72  QNMARDWEIPCLIHRFDS-KNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLATAHHL 130

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            DQ ETV  R  R     G G +G+    +Y     + RP L   +EDI  +     + +
Sbjct: 131 GDQAETVLYRLLR-----GSGTAGLAG--IYPQKGKLIRPLLTVTKEDILEYCRNEKLPY 183

Query: 189 CEDPSNTDDRFERVRVR-----RFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPK 240
             D SN +  + R ++R        R+ +   +    +  + LR     +   V     +
Sbjct: 184 ALDHSNEEPVYVRNKIRLQLLPELQREYNPKIIEALGRTAEVLRWDEEYLEEEVQSAWKR 243

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
           +  +     + + + I  +   +L  L+R +A +  G+     ++ +E+VM
Sbjct: 244 WAILDTEQRVGLRRTIFELPKAILSRLIRRAATLVSGEPRGIAFQYVEQVM 294


>gi|184152910|ref|YP_001841251.1| cell cycle protein [Lactobacillus reuteri JCM 1112]
 gi|183224254|dbj|BAG24771.1| cell cycle protein [Lactobacillus reuteri JCM 1112]
          Length = 477

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 9/202 (4%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R  VRS  +     ++VAVS G DSM LL  L  + S     + +     ++H LR+ ++
Sbjct: 23  RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHELRKQSQ 79

Query: 68  DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    +  K   A++++TAH
Sbjct: 80  LEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRASILLTAH 139

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +D  ET+ M+  R    +   L G+ D   +     I RP L   ++ ++ + LQ ++
Sbjct: 140 HQNDLAETMLMKMTR--GGQLSQLVGIRDRRPFASGTLI-RPLLPFSKQQLKKYALQHHL 196

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
            W ED +N D   +R R R  +
Sbjct: 197 KWYEDKTNKDLNIQRNRFRHAI 218


>gi|65317524|ref|ZP_00390483.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Bacillus anthracis str. A2012]
          Length = 480

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  +  I    DPSN  + + R R+R++V
Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|266619822|ref|ZP_06112757.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479]
 gi|288868610|gb|EFD00909.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479]
          Length = 462

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 20/217 (9%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M    +ES+R F+     LV    +++ +SGG+DS+ LL+ LH + ++ +   I+  A+ 
Sbjct: 1   MHRKILESIREFIGENHMLVPGDRVIIGLSGGADSVSLLMILHELKNELN---IELFAVH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISE 112
           V H LR E A  +  Y  ++   L +     H+ V+            A R  RY ++ E
Sbjct: 58  VHHGLRGEEADRDSAYAQELSENLGVPFVCVHANVAEYARVNGMSEEEAGRHLRYRILEE 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLR 171
                +A+ I  AH  DDQ ETV     R    KG+G +  + DTI+        RP L 
Sbjct: 118 QRLAHHASKIAVAHHADDQAETVLYNLFRGSGLKGIGGMKPVRDTII--------RPLLS 169

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             R++I ++L ++ IS+CED +N+   + R R+R  +
Sbjct: 170 VTRKEILAYLEEKEISYCEDSTNSGTDYIRNRLRHEI 206


>gi|229003073|ref|ZP_04160926.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4]
 gi|228758176|gb|EEM07368.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4]
          Length = 283

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V VSGG DS+ LL  L   L  R   K+K     VDH  R + + +++++V ++C ++
Sbjct: 29  IVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDHMFRGDESYEDLQFVENLCRKI 85

Query: 81  RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +    +    S+   Q G+ A  AARE RYA +    K  +A  +   H  DDQ+ET+ 
Sbjct: 86  GVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKYDARYVALGHHGDDQMETIL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    K  G +G+     +    ++ RP L   +E+I ++  +  ++   DPSN  
Sbjct: 146 MRLVRGSTPK--GYAGIAVKRPFHSG-YVIRPLLAVTKEEINAYCKRLGVTPRMDPSNEK 202

Query: 197 DRFERVRVRRFV 208
           + + R R+R++V
Sbjct: 203 EVYTRNRLRKYV 214


>gi|15618905|ref|NP_225191.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|15836528|ref|NP_301052.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|16752030|ref|NP_445396.1| MesJ/Ycf62 family protein [Chlamydophila pneumoniae AR39]
 gi|33242366|ref|NP_877307.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183]
 gi|61216756|sp|Q9Z6R2|TILS_CHLPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|4377326|gb|AAD19134.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189770|gb|AAF38647.1| MesJ/Ycf62 family protein [Chlamydophila pneumoniae AR39]
 gi|8979370|dbj|BAA99204.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|33236877|gb|AAP98964.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183]
          Length = 319

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 97/200 (48%), Gaps = 17/200 (8%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            F  SL      L+A+SGGSDS+ L      +L +R    + F+A+ +DH  R T+  E 
Sbjct: 16  LFFASLDVKKRYLLALSGGSDSLFLFY----LLKERG---VSFTAVHIDHGWRSTSAQEA 68

Query: 71  RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + + ++C+R  +   + +     +    L   AR+ RYA + E  + ++A  I  AH  +
Sbjct: 69  KELEELCAREGVPFVLYTLTAEEQGDKDLENQARKKRYAFLYESYRQLDAGGIFLAHHAN 128

Query: 130 DQLETVYMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           DQ ETV  R   S      K M      + +L      + RP L   +  ++  L  R I
Sbjct: 129 DQAETVLKRLLESAHLTNLKAMAERSYVEDVL------LLRPLLHIPKSSLKEALDARGI 182

Query: 187 SWCEDPSNTDDRFERVRVRR 206
           S+ +DPSN D+R+ R R+R+
Sbjct: 183 SYLQDPSNEDERYLRARMRK 202


>gi|325681847|ref|ZP_08161366.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus reuteri MM4-1A]
 gi|324978938|gb|EGC15886.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus reuteri MM4-1A]
          Length = 470

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 9/202 (4%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R  VRS  +     ++VAVS G DSM LL  L  + S     + +     ++H LR+ ++
Sbjct: 16  RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHELRKQSQ 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    +  K   A++++TAH
Sbjct: 73  LEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRASILLTAH 132

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +D  ET+ M+  R    +   L G+ D   +     I RP L   ++ ++ + LQ ++
Sbjct: 133 HQNDLAETMLMKMTR--GGQLSQLVGIRDRRPFASGTLI-RPLLPFSKQQLKKYALQHHL 189

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
            W ED +N D   +R R R  +
Sbjct: 190 KWYEDKTNKDLNIQRNRFRHAI 211


>gi|170023333|ref|YP_001719838.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis YPIII]
 gi|169749867|gb|ACA67385.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis YPIII]
          Length = 460

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 6/185 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L  +   ++   AI + H L   A   V++    C + 
Sbjct: 24  HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   VV       Q G+ AAAR ARY   S  A      +++TA   DDQ ET  +  +
Sbjct: 83  KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G  LS M   + +  +  + RP L   RE + ++   + + W ED SN DDRF+
Sbjct: 141 RGSGPAG--LSAMAAKMPFAHSQ-LLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 197

Query: 201 RVRVR 205
           R  +R
Sbjct: 198 RNFLR 202


>gi|153947345|ref|YP_001400015.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis IP
           31758]
 gi|254764826|sp|A7FFI7|TILS_YERP3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|152958840|gb|ABS46301.1| tRNA(Ile)-lysidine synthase [Yersinia pseudotuberculosis IP 31758]
          Length = 451

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 6/185 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L  +   ++   AI + H L   A   V++    C + 
Sbjct: 15  HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 73

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   VV       Q G+ AAAR ARY   S  A      +++TA   DDQ ET  +  +
Sbjct: 74  KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 131

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G  LS M   + +  +  + RP L   RE + ++   + + W ED SN DDRF+
Sbjct: 132 RGSGPAG--LSAMAAKMPFAHSQ-LLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 188

Query: 201 RVRVR 205
           R  +R
Sbjct: 189 RNFLR 193


>gi|153952817|ref|YP_001393582.1| TilS [Clostridium kluyveri DSM 555]
 gi|146345698|gb|EDK32234.1| TilS [Clostridium kluyveri DSM 555]
          Length = 462

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 140/311 (45%), Gaps = 46/311 (14%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LS IE  + F R       ++VAVSGG DS+ LL  L+ VL +R    I   A  V+HCL
Sbjct: 6   LSTIEENKMFNRG----DKVIVAVSGGPDSICLLHMLY-VLQNRL--DITLYAAHVNHCL 58

Query: 63  R--ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           R  E  KDE  YV   C  L +      + V++   + +    +A RE RY    E  K 
Sbjct: 59  RGEEGDKDE-EYVKKFCESLSVEFKSLKTDVNYIAKEKRISCESAGREVRYKFFEELKKK 117

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + A  I  AH  +DQ ETV MR  R     G GL G+        N+++ RP +R  R++
Sbjct: 118 LKAEKIAIAHNANDQAETVLMRIMR-----GAGLQGLTGINPVRDNVFV-RPLIRITRDE 171

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR---------RFVRDIDLHALYLKMKKFQDLR 227
           I  +    N+    D +N +  + R ++R          F RDI        + +  D+ 
Sbjct: 172 IEKYCDNNNLHPRIDKTNLETIYSRNKIRLELIPYIQNNFNRDI-----VAVLNRLSDI- 225

Query: 228 VKVNNAVAMLI-----PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
           +K++N     I      KY  +  + +I   +  L  D  +L  ++R+S  +  G +   
Sbjct: 226 IKIDNDYLNYISREKFKKYCEIKAQKVIIFKEAFLE-DKAVLVRIIRMSLEVVEGNL--- 281

Query: 283 GYRSMERVMLF 293
             + +E++ +F
Sbjct: 282 --KDIEKIHIF 290


>gi|148543503|ref|YP_001270873.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri DSM 20016]
 gi|227363652|ref|ZP_03847766.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri MM2-3]
 gi|148530537|gb|ABQ82536.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri DSM 20016]
 gi|227071321|gb|EEI09630.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri MM2-3]
          Length = 464

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 15/205 (7%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R  VRS  +     ++VAVS G DSM LL  L  + S     + +     ++H LR+ ++
Sbjct: 10  RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHELRKQSQ 66

Query: 68  DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    +  K   A++++TAH
Sbjct: 67  LEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRASILLTAH 126

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             +D  ET+ M+  R     G  LS   G+ D   +     I RP L   ++ ++ + LQ
Sbjct: 127 HQNDLAETMLMKMTR-----GGQLSQLVGIRDRRPFASGTLI-RPLLPFSKQQLKKYALQ 180

Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208
            ++ W ED +N D   +R R R  +
Sbjct: 181 HHLKWYEDKTNKDLNIQRNRFRHAI 205


>gi|225571157|ref|ZP_03780155.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM
           15053]
 gi|225159988|gb|EEG72607.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM
           15053]
          Length = 477

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++  VSGG+DS+ LL  L  +  +  F     +A+ V H LR ETA  + +YV  +C   
Sbjct: 42  VIAGVSGGADSICLLFVLLELKKEIGFS---VTAVHVHHGLRAETADRDAQYVEKICREQ 98

Query: 81  RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           ++     H  V    ++ +  +  A RE R A   E  +    T I  AH  +D  ET+ 
Sbjct: 99  KVELLVYHEDVKTYAAEHKLTVEEAGREVRRAAFKEVLRKKQGTKIALAHHQNDNAETLL 158

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GL GM      +  +WI  P L  +R+++ S+L +R IS+C D +N++
Sbjct: 159 LNLCR-----GTGLKGMGGIPPVE-GVWIH-PLLCLKRKEVESYLEERGISYCTDETNSE 211

Query: 197 DRFERVRVRRFV 208
           D + R ++R  V
Sbjct: 212 DSYARNKIRNQV 223


>gi|301169106|emb|CBW28703.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae 10810]
          Length = 430

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 153/341 (44%), Gaps = 32/341 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  D+C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIPLIIERVQVDKT-NGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  + ++  + N++W  D SN D+R++
Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKENLNWITDESNEDNRYD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +    A    I N  
Sbjct: 193 ----RNFLRNEILPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
           R  + L++T+   +L    L  E+ T+        NL D L
Sbjct: 308 RYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDL 340


>gi|294012454|ref|YP_003545914.1| cell cycle protein MesJ [Sphingobium japonicum UT26S]
 gi|292675784|dbj|BAI97302.1| cell cycle protein MesJ [Sphingobium japonicum UT26S]
          Length = 314

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 34/187 (18%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           VAVSGG DSM LL      L+ R+F G+++  A +VDH LR+ +  E   V+D C    I
Sbjct: 28  VAVSGGPDSMALLD-----LAARAFPGRVE--AATVDHGLRDASAVEAAMVADWCRDGGI 80

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           AH+ +       +  + + AR  RYAL+ E         ++TAH  DDQLET+ MR  R 
Sbjct: 81  AHATLH-PQGAVRGNVQSWARAQRYALLEEWRAARGLDWLLTAHHADDQLETLLMRLNRG 139

Query: 143 Y---------AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
                     A +G                 + RP L  R+ D+ ++ L+R +   +DPS
Sbjct: 140 AGVGGLAGVRARQGA----------------VLRPLLGMRKADLLAYALERGLPHVDDPS 183

Query: 194 NTDDRFE 200
           N D RF+
Sbjct: 184 NGDARFD 190


>gi|219666213|ref|YP_002456648.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536473|gb|ACL18212.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 472

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 124/291 (42%), Gaps = 22/291 (7%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L+ P + IL AVSGG DS+ L   L   + D+   KI      V H +RE + DE + V
Sbjct: 12  QLIAPGSRILAAVSGGPDSVALAHILWRYIQDKQEQKITLVITHVHHGVREESDDEEKMV 71

Query: 74  SDVCSRLRIA---HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTF 128
            ++     I    H   S KN     G     AARE RYA   E  +  N TL+ TAH  
Sbjct: 72  QNMARDWEIPCLIHRFDS-KNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLATAHHL 130

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            DQ ETV  R  R     G G +G+    +Y     + RP L   +EDI  +     + +
Sbjct: 131 GDQAETVLYRLLR-----GSGTAGLAG--IYPQKGKLIRPLLTVTKEDILEYCRNEKLPY 183

Query: 189 CEDPSNTDDRFERVRVR-----RFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPK 240
             D SN +  + R ++R        R+ +   +    +  + LR     +   V     +
Sbjct: 184 ALDHSNEEPIYVRNKIRLQLLPELQREYNPKIIEALGRTAEVLRWDEEYLEEEVQSAWKR 243

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
           +  +     + + + I  +   +L  L+R +A +  G+     ++ +E+VM
Sbjct: 244 WAILDTEQRVGLRRTIFELPKAILSRLIRRAATLVSGEPRGIAFQYVEQVM 294


>gi|78357070|ref|YP_388519.1| ketose-bisphosphate aldolase, class-II [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219475|gb|ABB38824.1| Ketose-bisphosphate aldolase, class-II [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 357

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           +L A SGG+DS  LL+ LH  L+ R    +   A+ +DH LR+ + D+  +VS +CS   
Sbjct: 58  MLAACSGGADSTALLLILH-YLAPRMGHTV--VAVHLDHALRQESADDAHFVSQLCSAAG 114

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            RL    + V+   +  + GL  A R+ARYA  ++ A   +  +I T H  DD  E V M
Sbjct: 115 IRLFSVRTDVADLAAAGRCGLEEAGRKARYAFYAKTAALFSRPVICTGHHADDLKEDVLM 174

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R      +G  GM   ++ + +L   RP L   +  + +FL      W ED SN+D 
Sbjct: 175 RLIRGAGWPALG--GM-QAVIPERSLL--RPLLVTEKYKLTTFLEACRCPWREDASNSDP 229

Query: 198 RFERVRVRRFV 208
            F R R+R  +
Sbjct: 230 SFTRNRIRNTI 240


>gi|198283303|ref|YP_002219624.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665676|ref|YP_002425891.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247824|gb|ACH83417.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517889|gb|ACK78475.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 464

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS  LL+AL S+         +  A+ VDH     +    R+  +    L 
Sbjct: 29  LYVAYSGGGDSTALLVALLSL-------GYEIHALHVDHGWHPDSAQWARFCQEQAKALG 81

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  +++      P  G    AR ARYAL++  A+      + TA   +DQ ETV ++  R
Sbjct: 82  VPFTLLHLAADTPGEGPEDQARRARYALMA--AQLRQGDWLFTAQHREDQAETVLLQLLR 139

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  L+GM         L + RP L   R+ +R +L QR + +  DP+N D R++R
Sbjct: 140 GTGVAG--LAGMPRQRPLGAGL-LVRPLLDVPRQVLRDYLEQRQLPFLNDPANADMRYDR 196

Query: 202 VRVRRFV 208
           VR+RR +
Sbjct: 197 VRIRRIL 203


>gi|228925317|ref|ZP_04088414.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228834364|gb|EEM79904.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 480

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKVLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  +  I    DPSN  + + R R+R++V
Sbjct: 184 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|295395569|ref|ZP_06805763.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971588|gb|EFG47469.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 326

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 12/198 (6%)

Query: 9   VRFFVRSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +R  V   + P H  L+AVSGG+DSM L  A  + L+ + +   +F A++VDH L+E + 
Sbjct: 14  IRKAVEDALEPGHTYLIAVSGGADSMSLAAAC-AFLTRKDY---EFVAVTVDHGLQEGSA 69

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +         + L +  +V + + +    GL A AR ARYA +   AK   A  ++ AHT
Sbjct: 70  EVAARTQRALTDLGLTATVETAEVTATSDGLEADARTARYAALDRVAKERGAAGVLLAHT 129

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ ETV +   R    +   L+GM          +I RP L   R +  S    +NI 
Sbjct: 130 QNDQAETVLLGLLRGSGAR--SLAGMRPRA----GRYI-RPLLGITRAETESATTAQNIP 182

Query: 188 WCEDPSNTDDRFERVRVR 205
              DP N+D  F RV+VR
Sbjct: 183 VWNDPMNSDPSFTRVKVR 200


>gi|219853482|ref|YP_002470604.1| hypothetical protein CKR_0139 [Clostridium kluyveri NBRC 12016]
 gi|219567206|dbj|BAH05190.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 465

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 140/311 (45%), Gaps = 46/311 (14%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LS IE  + F R       ++VAVSGG DS+ LL  L+ VL +R    I   A  V+HCL
Sbjct: 9   LSTIEENKMFNRG----DKVIVAVSGGPDSICLLHMLY-VLQNRL--DITLYAAHVNHCL 61

Query: 63  R--ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           R  E  KDE  YV   C  L +      + V++   + +    +A RE RY    E  K 
Sbjct: 62  RGEEGDKDE-EYVKKFCESLSVEFKSLKTDVNYIAKEKRISCESAGREVRYKFFEELKKK 120

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + A  I  AH  +DQ ETV MR  R     G GL G+        N+++ RP +R  R++
Sbjct: 121 LKAEKIAIAHNANDQAETVLMRIMR-----GAGLQGLTGINPVRDNVFV-RPLIRITRDE 174

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR---------RFVRDIDLHALYLKMKKFQDLR 227
           I  +    N+    D +N +  + R ++R          F RDI        + +  D+ 
Sbjct: 175 IEKYCDNNNLHPRIDKTNLETIYSRNKIRLELIPYIQNNFNRDI-----VAVLNRLSDI- 228

Query: 228 VKVNNAVAMLI-----PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
           +K++N     I      KY  +  + +I   +  L  D  +L  ++R+S  +  G +   
Sbjct: 229 IKIDNDYLNYISREKFKKYCEIKAQKVIIFKEAFLE-DKAVLVRIIRMSLEVVEGNL--- 284

Query: 283 GYRSMERVMLF 293
             + +E++ +F
Sbjct: 285 --KDIEKIHIF 293


>gi|300814650|ref|ZP_07094901.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511269|gb|EFK38518.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 440

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DSM LL   ++V+  +    +      V+H +RE AK++  +V D+C +  
Sbjct: 21  LLLAISGGPDSMYLL---YNVIDLKKEFNLDLLVCHVNHGIRENAKNDENFVIDICKKFN 77

Query: 82  IAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I +++  V+      +  + A  A R  RY    E+A   +   I+TAH  +DQ ET+  
Sbjct: 78  INYNIKHVNMNEYAKENNMSAEEAGRFLRYEFFKENA---DGRKILTAHNLNDQAETILT 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G+ G+   + ++ N  I RP L   R  I  +L + N+ +  D +N   
Sbjct: 135 RIFR-----GTGVKGLAGILQFNNN--IVRPILNIPRYQIEDYLNKNNLKYVIDETNLKS 187

Query: 198 RFERVRVR 205
            + R R+R
Sbjct: 188 DYTRNRIR 195


>gi|84495023|ref|ZP_00994142.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649]
 gi|84384516|gb|EAQ00396.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649]
          Length = 320

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 97/213 (45%), Gaps = 23/213 (10%)

Query: 9   VRFFVRS----LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           VR+ VRS    +   A +LVA SGG DSM L  A+       S+      A+ VDH L+ 
Sbjct: 11  VRYAVRSSLADIAPDAVVLVACSGGGDSMALAEAVAHEARRASW---SAGAVVVDHGLQA 67

Query: 65  TAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            + D     +    RLR        V         +GL +AAR+ARYA +S  A  + A 
Sbjct: 68  GSAD---VAARAAGRLRDLGLGPVVVERVAVVDNGSGLESAARDARYAALSGVADRLGAA 124

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRS 179
           +++  HT +DQ E V +   R    +   L+GM     +Y       RP L   R + R 
Sbjct: 125 VVVVGHTLEDQAEQVLLGLVRGSGAR--SLAGMASVRGIY------RRPLLGVTRAECRE 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            L    + W +DP N D  F RVR RR V D++
Sbjct: 177 SLKAEGVEWWDDPMNDDAAFTRVRARRAVADLE 209


>gi|120602664|ref|YP_967064.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris DP4]
 gi|120562893|gb|ABM28637.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris DP4]
          Length = 390

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 89/192 (46%), Gaps = 12/192 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H +VA+SGG+DS  LL+ LH +   R    +  SA+ VDH LR  +  E R     C  L
Sbjct: 64  HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 120

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I  +V    V    +  + G   A R+ARY L++    +  A  I T H   D  E V 
Sbjct: 121 GIPLAVHTLAVDELAAVWRVGTEEAGRKARYDLLAAALPSAAADWICTGHHLGDLAEDVL 180

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R      +G   +CD         I RP L   ++ + +FL    +SW EDPSN  
Sbjct: 181 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTGKDRLEAFLATLGVSWTEDPSNAS 235

Query: 197 DRFERVRVRRFV 208
           D + R R+R  V
Sbjct: 236 DTYLRNRMRHGV 247


>gi|268608652|ref|ZP_06142379.1| cell cycle protein MesJ [Ruminococcus flavefaciens FD-1]
          Length = 457

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 22/191 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++  +SGG+DS+GLL+AL+ +   R    I   A+ V+HCLR  E+ +DE  +   +CSR
Sbjct: 21  VVCGLSGGADSVGLLLALYEL---REKLGINVEALHVNHCLRGEESDRDE-EFCCHLCSR 76

Query: 80  LRIAHSV--VSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I  S   V  K+   +  L    AAR+ RY +   +++      I TAH  +D LETV
Sbjct: 77  LGIPFSAFRVDVKSYAKEHSLSDEEAARKLRYGVFEANSQ---GKKIATAHNANDNLETV 133

Query: 136 YMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            +   R  A KGM G+    + I+        RP L   RE+I +FL +R   +  D +N
Sbjct: 134 ILNLARGSALKGMAGIPVRRNNII--------RPLLTVSREEIEAFLSERGQEFVTDSTN 185

Query: 195 TDDRFERVRVR 205
             D + R ++R
Sbjct: 186 LSDDYTRNKIR 196


>gi|42526849|ref|NP_971947.1| hypothetical protein TDE1341 [Treponema denticola ATCC 35405]
 gi|61217302|sp|Q73N15|TILS_TREDE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|41817164|gb|AAS11858.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
          Length = 460

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 22/197 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVSD 75
           P  +L+AVSGG+DSM +L A   + SD +    +   ++V+H +R   ET  D  ++V D
Sbjct: 29  PLRLLLAVSGGADSMAMLSAFLELKSDIN---AEIFVLTVNHNIRPEKETLGD-AQFVLD 84

Query: 76  VCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            C+         I  + V  +    +TG+  AAR  RY    + A ++NA  I+TAH  +
Sbjct: 85  FCNDKCPCILAEIPKNTVFDEAKNRKTGIEDAARFLRYNEFEKAADSLNADYILTAHNKN 144

Query: 130 DQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           D  ETV MR  Q    E  MG+S      +        RP L   R +I  +L ++NI W
Sbjct: 145 DNYETVLMRLFQGSEPEALMGISPRRGRFI--------RPMLNISRSEIEEYLKEKNIPW 196

Query: 189 CEDPSNTDDRFERVRVR 205
            ED +N +  + R +VR
Sbjct: 197 REDATNLEASYLRNKVR 213


>gi|325295220|ref|YP_004281734.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065668|gb|ADY73675.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 454

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 15/190 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77
           + +LVA+SGG DS+ LL   H +L  +   KI  +A  ++H LR  E+ +DE  +V  +C
Sbjct: 20  SKVLVALSGGPDSVTLL---HILLQLKEKLKIDIAAAHLNHMLRGEESERDE-NFVKKLC 75

Query: 78  SRLRIA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           S   I       + K       + A ARE RY  + E  K IN   I T HT  D +ETV
Sbjct: 76  SDWGIPLFTKRENIKEISKGKNIEAVAREVRYRFLEETLKKINGDYIATGHTASDLVETV 135

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +        KG G+ G      +     I RP     RE+I +++ + NI +  D SN 
Sbjct: 136 ILN-----LTKGTGIKGFRG--FFPKREKIIRPLFEVTREEIENYIKENNIPFVVDSSNL 188

Query: 196 DDRFERVRVR 205
              FER  +R
Sbjct: 189 KTEFERNLIR 198


>gi|61216557|sp|Q72C25|TILS_DESVH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 347

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 90/196 (45%), Gaps = 12/196 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V   H +VA+SGG+DS  LL+ LH +   R    +  SA+ VDH LR  +  E R     
Sbjct: 17  VRNCHCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTF 73

Query: 77  CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  L I  +V    V    +  + G   A R+ARY L++    +  A  I T H   D  
Sbjct: 74  CHALGIPLAVHTLTVDELAAVWRVGTEEAGRKARYDLLAAALPSPAADWICTGHHLGDLA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E V MR  R      +G   +CD         I RP L   ++ + +FL    +SW EDP
Sbjct: 134 EDVLMRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTEKDRLEAFLATLGVSWTEDP 188

Query: 193 SNTDDRFERVRVRRFV 208
           SN  D + R R+R  V
Sbjct: 189 SNASDTYLRNRMRHGV 204


>gi|99034626|ref|ZP_01314580.1| hypothetical protein Wendoof_01000607 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 407

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 139/337 (41%), Gaps = 35/337 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           VSGG DS+   + LH + +     K+    A++V+H LR  ++ E  +V      L    
Sbjct: 1   VSGGVDSV---VLLHLMTNWAKKNKLLLPIALTVNHGLRPESQKEADFVVSYAKELGAKE 57

Query: 85  S-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           S +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ ET  +R     
Sbjct: 58  SFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETFLLR----- 112

Query: 144 AEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            E+G G+ G+   D   +   ++I RP L   R +I  +     + W ED SN D ++ R
Sbjct: 113 LERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNHDLKYRR 172

Query: 202 VRVRRFVRDID----------LHALYLKMKK---FQDLRVKVNNAVAMLIPKYLTVHMRS 248
              R  ++  D          L AL++K          R+  N+ V +    Y+ + +  
Sbjct: 173 TLYRNLLKSSDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIKLSE 232

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGR 306
              + ++I          LL  S      +   P Y S+  +   +  K     C   G 
Sbjct: 233 FYQLPEEI-------ALRLLLYSIMAIASKHYKPRYSSLIAIFNRILQKDSNVNCTLSGC 285

Query: 307 VVIDRRANFLWITRAVRNLPTLILYP-EETTVWDGRY 342
            +     N L I  + R     +  P  E T WD R+
Sbjct: 286 KIRKYGENILIIRESSRIQEITVNLPLNEPTQWDNRF 322


>gi|227544681|ref|ZP_03974730.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri CF48-3A]
 gi|227185327|gb|EEI65398.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri CF48-3A]
          Length = 470

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 102/202 (50%), Gaps = 9/202 (4%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R  VRS  +     ++VAVS G DSM LL  L  + S     + +     ++H LR+ ++
Sbjct: 16  RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLPSK---YRPQIIVAHMNHELRKQSE 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    E  K   A++++TAH
Sbjct: 73  LEERFIRQYCKQNDLKLAVAHWPQDLHPQTGVENAARQARYQFFREVMKDNQASILLTAH 132

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +D  ET+ M+  R    +   L G+ D   +     I RP L   ++ ++ + LQ ++
Sbjct: 133 HQNDLAETMLMKMAR--GGQLSQLVGIRDWRPFASGTLI-RPLLPFSKQQLKKYALQHHL 189

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
            W ED +N D   +R R R  +
Sbjct: 190 KWYEDKTNKDLSIQRNRFRHAI 211


>gi|53804114|ref|YP_114243.1| tRNA(Ile)-lysidine synthetase [Methylococcus capsulatus str. Bath]
 gi|61216455|sp|Q607F5|TILS_METCA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|53757875|gb|AAU92166.1| tRNA(Ile)-lysidine synthetase [Methylococcus capsulatus str. Bath]
          Length = 439

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 95/189 (50%), Gaps = 15/189 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  +  V   R    I   AI V H ++  A    R+ + V  R  +A
Sbjct: 20  VAFSGGLDSAVLLDLMCQV---RRVSGIGVRAIHVHHGIQPEADAWSRHCAAVADRYGVA 76

Query: 84  HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
             ++     S+P     AAAR ARY   S  A      +++TA   DDQ ET+ ++  R 
Sbjct: 77  LDILQIDGRSRPGDSPEAAARTARYH--SLEASLDPGDILVTAQHLDDQAETLLLQLLR- 133

Query: 143 YAEKGMGLSG---MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               G GL+G   M + + +   + + RP LR  R DI ++  +R +SW EDPSN D+R+
Sbjct: 134 ----GAGLAGLAAMPNAVPFGAGI-LHRPLLRFGRRDILAYAQERGLSWIEDPSNRDERY 188

Query: 200 ERVRVRRFV 208
           +R  +RR +
Sbjct: 189 DRNFIRRRI 197


>gi|296500896|ref|YP_003662596.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
 gi|296321948|gb|ADH04876.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
          Length = 476

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 180 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233

Query: 232 NAVAML 237
              A L
Sbjct: 234 EDEAYL 239


>gi|238784898|ref|ZP_04628898.1| tRNA(Ile)-lysidine synthase [Yersinia bercovieri ATCC 43970]
 gi|238714215|gb|EEQ06227.1| tRNA(Ile)-lysidine synthase [Yersinia bercovieri ATCC 43970]
          Length = 451

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 85/179 (47%), Gaps = 6/179 (3%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LV  SGG DS  +L+ L   + D+   ++K  AI + H L   A   V++    C R +I
Sbjct: 26  LVGFSGGLDS-SVLLHLLVCIRDQLIPELKVRAIHIHHGLNPRADGWVKHCQQQCERWQI 84

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              VV         G+ AAAR ARY   S H       +++TA   DDQ ET  +  +R 
Sbjct: 85  PLEVVRVSIDPRHNGIEAAARSARYQAFSSHLAA--DEVLLTAQHLDDQCETFLLALKRG 142

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                 GLS M   + +  +  + RP L   RE + ++   + + W ED SN DDRF+R
Sbjct: 143 SGPA--GLSAMAARMPFAHSQ-LLRPLLTLSRETLENYARIQQLQWIEDDSNQDDRFDR 198


>gi|282882540|ref|ZP_06291161.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B]
 gi|281297682|gb|EFA90157.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B]
          Length = 440

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DSM LL   ++V+  +    +      V+H +RE AK++  +V D+C +  
Sbjct: 21  LLLAISGGPDSMYLL---YNVIDLKKEFNLDLLVCHVNHGIRENAKNDENFVIDICKKFN 77

Query: 82  IAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I +++  V+      +  + A  A R  RY    E+A   +   I+TAH  +DQ ET+  
Sbjct: 78  INYNIKHVNMNEYAKENNMSAEEAGRFLRYEFFKENA---DGRKILTAHNLNDQAETILT 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G+ G+   + ++ N  I RP L   R  I  +L + N+ +  D +N   
Sbjct: 135 RIFR-----GTGVKGLAGILQFNNN--IVRPILNIPRYQIEDYLNKNNLKYVIDETNLKS 187

Query: 198 RFERVRVR 205
            + R R+R
Sbjct: 188 DYTRNRIR 195


>gi|229125581|ref|ZP_04254614.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
 gi|228657898|gb|EEL13703.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
          Length = 480

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237

Query: 232 NAVAML 237
              A L
Sbjct: 238 EDEAYL 243


>gi|228956505|ref|ZP_04118302.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229107750|ref|ZP_04237387.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
 gi|229142870|ref|ZP_04271312.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
 gi|229148473|ref|ZP_04276730.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
 gi|228635015|gb|EEK91587.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
 gi|228640582|gb|EEK96970.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
 gi|228675723|gb|EEL30930.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
 gi|228803195|gb|EEM50016.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 480

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237

Query: 232 NAVAML 237
              A L
Sbjct: 238 EDEAYL 243


>gi|218235253|ref|YP_002364913.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
 gi|218163210|gb|ACK63202.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
          Length = 476

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 180 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233

Query: 232 NAVAML 237
              A L
Sbjct: 234 EDEAYL 239


>gi|30018334|ref|NP_829965.1| cell cycle protein MesJ [Bacillus cereus ATCC 14579]
 gi|61216614|sp|Q81J84|TILS_BACCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29893874|gb|AAP07166.1| Cell cycle protein MesJ [Bacillus cereus ATCC 14579]
          Length = 476

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 180 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 233

Query: 232 NAVAML 237
              A L
Sbjct: 234 EDEAYL 239


>gi|300909077|ref|ZP_07126540.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus reuteri SD2112]
 gi|300894484|gb|EFK87842.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus reuteri SD2112]
          Length = 464

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 103/206 (50%), Gaps = 17/206 (8%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R  VRS  +     ++VAVS G DSM LL  L  + S     + +     ++H LR+ ++
Sbjct: 10  RHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLPSK---YRPQIIVAHMNHELRKQSE 66

Query: 68  DEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    E  K   A++++TAH
Sbjct: 67  LEERFIRQYCKQNDLKLAVAHWPQDLHPQTGVENAARQARYQFFREVMKDNQASILLTAH 126

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS----RPFLRCRREDIRSFLL 182
             +D  ET+ M+  R     G  LS +    + D   + S    RP L   ++ ++ + L
Sbjct: 127 HQNDLAETMLMKMAR-----GGQLSQLVG--IRDWRPFASGTLIRPLLPFSKQQLKKYAL 179

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208
           Q ++ W ED +N D   +R R R  +
Sbjct: 180 QHHLKWYEDKTNKDLSIQRNRFRHAI 205


>gi|328551768|gb|AEB22260.1| tRNA(Ile)-lysidine synthetase [Bacillus amyloliquefaciens TA208]
 gi|328910028|gb|AEB61624.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens LL3]
          Length = 472

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 106/232 (45%), Gaps = 23/232 (9%)

Query: 6   IESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHC 61
           ++SV  F ++    A    I+  VSGG DSM LL  L     ++ FGK     A  VDH 
Sbjct: 1   MKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSML-----NKHFGKSSVIIAAHVDHQ 55

Query: 62  LRETAKDE-VRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116
            R +  +E +++V   C    I    V    S    K +    AAAR+ RY    +    
Sbjct: 56  FRGSESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFKDLMAK 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +  AH  DDQ+ET+ MR  +     G GL+GM     +   L I RPFL   +++
Sbjct: 116 HQAKFLALAHHGDDQVETMLMRLAK--GTLGAGLAGMQPVREFASGLLI-RPFLYAAKDE 172

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKK 222
           I  +  Q  +S+  D SNT D + R R R+ V         D+H ++ K+ +
Sbjct: 173 ILEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSE 224


>gi|16077135|ref|NP_387948.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221307877|ref|ZP_03589724.1| hypothetical protein Bsubs1_00340 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312199|ref|ZP_03594004.1| hypothetical protein BsubsN3_00340 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317132|ref|ZP_03598426.1| hypothetical protein BsubsJ_00340 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321395|ref|ZP_03602689.1| hypothetical protein BsubsS_00340 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|8039814|sp|P37563|TILS_BACSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|2632334|emb|CAB11843.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 472

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC- 77
           A I+V VSGG DSM LL ALH+ L  RS   I   A  VDH  R    +E +R+V   C 
Sbjct: 18  ATIIVGVSGGPDSMALLHALHT-LCGRSANVI---AAHVDHRFRGAESEEDMRFVQAYCK 73

Query: 78  -SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +L    + ++      + GL   AAAR+ RY    E      A  +  AH  DDQ+ET
Sbjct: 74  AEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGDDQVET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + M+  +     G GL+GM     +     I RPFL   +E+I  +  +  +S+  D SN
Sbjct: 134 MLMKLAK--GTLGTGLAGMQPVRRFGTGRII-RPFLTITKEEILHYCHENGLSYRTDESN 190

Query: 195 TDDRFERVRVRRFV 208
             D + R R R+ V
Sbjct: 191 AKDDYTRNRFRKTV 204


>gi|291482439|dbj|BAI83514.1| hypothetical protein BSNT_00119 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 472

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC- 77
           A I+V VSGG DSM LL ALH+ L  RS   I   A  VDH  R    +E +R+V   C 
Sbjct: 18  ATIIVGVSGGPDSMALLHALHT-LCGRSANVI---AAHVDHRFRGAESEEDMRFVQAYCK 73

Query: 78  -SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +L    + ++      + GL   AAAR+ RY    E      A  +  AH  DDQ+ET
Sbjct: 74  AEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGDDQVET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + M+  +     G GL+GM     +     I RPFL   +E+I  +  +  +S+  D SN
Sbjct: 134 MLMKLAK--GTLGTGLAGMQPVRRFGTGRII-RPFLTITKEEILHYCRENGLSYRTDESN 190

Query: 195 TDDRFERVRVRRFV 208
             D + R R R+ V
Sbjct: 191 AKDDYTRNRFRKTV 204


>gi|229039969|ref|ZP_04189733.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
 gi|228727377|gb|EEL78570.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
          Length = 480

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V  +C  L I    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVN 231
             +  + N+    DPSN  + + R R+R++V       +  +H      +KFQ   V++ 
Sbjct: 184 VDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMH------EKFQKFSVQMQ 237

Query: 232 NAVAML 237
              A L
Sbjct: 238 EDEAYL 243


>gi|467456|dbj|BAA05302.1| unknown [Bacillus subtilis]
          Length = 486

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 102/211 (48%), Gaps = 15/211 (7%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++SV+ F+      +  A I+V VSGG DSM LL ALH+ L  RS   I   A  VDH  
Sbjct: 15  VKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHT-LCGRSANVI---AAHVDHRF 70

Query: 63  RETAKDE-VRYVSDVC--SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTI 117
           R    +E +R+V   C   +L    + ++      + GL   AAAR+ RY    E     
Sbjct: 71  RGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKH 130

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +  AH  DDQ+ET+ M+  +     G GL+GM     +     I RPFL   +E+I
Sbjct: 131 QADYLALAHHGDDQVETMLMKLAK--GTLGTGLAGMQPVRRFGTGRII-RPFLTITKEEI 187

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  +S+  D SN  D + R R R+ V
Sbjct: 188 LHYCHENGLSYRTDESNAKDDYTRNRFRKTV 218


>gi|77360937|ref|YP_340512.1| lysidine forming enzyme [Pseudoalteromonas haloplanktis TAC125]
 gi|76875848|emb|CAI87069.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Pseudoalteromonas haloplanktis TAC125]
          Length = 467

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 152/328 (46%), Gaps = 19/328 (5%)

Query: 24  VAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           VA+SGG DS+ LL  +H++ + D +   ++ SAI + H L + A D   +   +C+ L +
Sbjct: 59  VALSGGVDSVVLLHLMHALRVQDPA---LQVSAIYIHHGLSQYADDWQVFCQTLCNELNV 115

Query: 83  AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
                      + +T L A AR+ARY  + E +   + ++I+     +DQ+ET  +R +R
Sbjct: 116 PFQTAKVNIEQQSRTSLEAQARDARYQALDELSP--HGSIILLGQHLNDQIETFLLRLKR 173

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG+G      T+      +  RP L  +R DI +F  Q  ++   D SNTD+RFER
Sbjct: 174 GSGLKGLGAMQRERTLTSGRLCF--RPLLAVKRSDIEAFAAQYALNHVTDDSNTDERFER 231

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R+ V  I L A +   ++     + +      L+ +Y  + +   +  SQ  LNI +
Sbjct: 232 NFMRQQVVPI-LAARFNGFEQCTARSISLLQQQHALLNEYTHIDLTQCVN-SQQALNISA 289

Query: 262 TLLFYLLRVSAAICGG----QISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRAN 314
              F  +R +  +          LP  + +E+++   +  K+  +  + +    I R   
Sbjct: 290 IAKFTPIRTANVVRAWLELFTHVLPSQKQLEQIINQAIAAKTDAQMLIELSDGQIRRHQG 349

Query: 315 FLW-ITRAVRNLPTLILYPEETTVWDGR 341
            L+ +    + L  +++   E  + DGR
Sbjct: 350 HLYFVVPRTQILNNILITRSELKLADGR 377


>gi|218295213|ref|ZP_03496049.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
 gi|218244416|gb|EED10941.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
          Length = 509

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 20/184 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGG DS+ L    H V   R  G+    A  +DH LR  + +++ +V D+  RL 
Sbjct: 21  LVLAVSGGGDSVALA---HLV---RRAGRRAVVAY-LDHALRPDSGEDLLFVRDLAFRLG 73

Query: 82  I---AHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
                  V   + +K +   L A ARE RYA +   AK + A  I+TAHT DDQ ETV +
Sbjct: 74  FPFYGERVEVGRIAKERGENLEALAREVRYAFLHRVAKEVGAKAILTAHTLDDQAETVLL 133

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  +  A +G+G+         +    + RP L   RE +R++LL    +W EDP+N D 
Sbjct: 134 KLLQGTA-RGLGIR--------EKEGMVVRPLLPFTREALRAYLLGLGEAWREDPTNRDL 184

Query: 198 RFER 201
             +R
Sbjct: 185 SLDR 188


>gi|319775667|ref|YP_004138155.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3047]
 gi|317450258|emb|CBY86474.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3047]
          Length = 433

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 150/341 (43%), Gaps = 32/341 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  ++C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSIRAIHIHHALSPNADCWAQHCQNLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I +H +     +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQI--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  +  +  Q  ++W +D SN D+RF+
Sbjct: 136 RGSGLQGLG-AMQHQSVLFGMP--IFRPLLGFTRLQLEDYAQQEKLNWVKDESNEDNRFD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +    A    I N  
Sbjct: 193 ----RNFLRNEILPKLRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRQYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
           R  + L++T+   +L    L  E+ T+        NL D L
Sbjct: 308 RYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDL 340


>gi|319941154|ref|ZP_08015489.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805321|gb|EFW02131.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis
           3_1_45B]
          Length = 702

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 22/204 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVC 77
           P  ++VA+SGG DSM LL     + +DR    I +  A+ V H L   A     +    C
Sbjct: 197 PVRVIVALSGGRDSMALLDVAARIAADRRQQLIAELRAVYVHHGLEREADAWEEHCRREC 256

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +    V  +  +   G+ AAAR+ RY  ++++A     ++IMTAH  DD++ET  +
Sbjct: 257 EKRGVIFEAVRVRVQRSGDGIEAAARDVRYRALAQYALKSGCSIIMTAHHEDDRIETFLL 316

Query: 138 RSQRDYAEKGMGLSGM----------------CDTILYDLNLWISRPFLRCRREDIRSFL 181
           +  R     G GL G+                   +     +++ RP+    R DI  ++
Sbjct: 317 QWMR-----GAGLEGLAAFPEVRELAAPSMEDAKAVQARKQVFLLRPWSGVLRRDIERYV 371

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
             R I + +DPSN   ++ R RVR
Sbjct: 372 KNRRIPYVDDPSNNSPKYARNRVR 395


>gi|329122059|ref|ZP_08250667.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
           DSM 19965]
 gi|327466866|gb|EGF12382.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
           DSM 19965]
          Length = 466

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+AVSGG DS+GLL+A++ + S   F        ++DH LR+ + +EV YV+ +C  L 
Sbjct: 9   ILLAVSGGPDSLGLLLAMNELKSSEGFS---IGCCTIDHHLRKESAEEVIYVNKICEELG 65

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   V    V  +  +       AARE RY  + E       T I  AH  DDQ ETV  
Sbjct: 66  IDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHSDDQAETVIH 125

Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           R  R     GM GLSGM     Y +     RPFL   +++I++++
Sbjct: 126 RLIRG---GGMTGLSGMLPKREYFI-----RPFLAVTKKEIQAYI 162


>gi|294496939|ref|YP_003560639.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551]
 gi|294346876|gb|ADE67205.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551]
          Length = 458

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V +SGG DS+ LL  L S+   +S   I   A  VDH  R + +K ++ YV + C +L
Sbjct: 21  VVVGISGGPDSLALLHFLWSLKEQKSLTII---AAHVDHMFRGKESKQDMEYVQNYCKQL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I        V+    + +     AARE RY   +   K   A L+   H  DDQ+ET+ 
Sbjct: 78  NIKCEAKQIDVTAYQKERKLSSQVAARECRYTFFNHVMKKHKANLLALGHHGDDQIETML 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R       G +GM     Y  + +I RPFL   +E+I  +     ++   DPSN  
Sbjct: 138 MRMVR--GSTMNGYAGMQPKRPY-ADGFIIRPFLAVTKEEINRYCKLHGLTPRIDPSNEK 194

Query: 197 DRFERVRVRRFV 208
           D + R R R +V
Sbjct: 195 DSYTRNRFRHYV 206


>gi|195998279|ref|XP_002109008.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens]
 gi|190589784|gb|EDV29806.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens]
          Length = 462

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG DS+ L      VL+ + F K+   AI+VDH LR  +  E + V+++  +L 
Sbjct: 19  VALAVSGGVDSISL-----CVLARQYFQKL--FAITVDHRLRAESSQEAQNVNEILDKLN 71

Query: 82  IAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I H +VS  W        +   AR  RY L+ E  +  N   ++T H  +DQ+ET   R 
Sbjct: 72  IPHKIVSCNWNQEVNFRKVQELARLKRYRLLGEECQNQNIQYLLTGHHLNDQIETFIFRL 131

Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                  G+    +   + L+   + + RP L  ++  ++    Q  + W EDPSN    
Sbjct: 132 SCKSGIDGLSCMKLSQNLRLHFPPITLIRPLLSFQKTQLQEVCHQNKVIWIEDPSNMSLM 191

Query: 199 FERVRVRR 206
           ++R ++R+
Sbjct: 192 YKRNQIRQ 199


>gi|321313737|ref|YP_004206024.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5]
 gi|320020011|gb|ADV94997.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5]
          Length = 472

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC- 77
           A I+V VSGG DSM LL ALH+ L  RS   I   A  VDH  R    +E +R+V   C 
Sbjct: 18  ATIIVGVSGGPDSMALLHALHT-LCGRSANVI---AAHVDHRFRGAESEEDMRFVQAYCK 73

Query: 78  -SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +L    + ++      + GL   AAAR+ RY    E      A  +  AH  DDQ+ET
Sbjct: 74  AEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKHQADYLALAHHGDDQVET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + M+  +     G GL+GM     +     I RPFL   +E+I  +  +  +S+  D SN
Sbjct: 134 MLMKLAK--GTLGTGLAGMQPVRRFGTGRII-RPFLPITKEEILHYCRENGLSYRTDESN 190

Query: 195 TDDRFERVRVRRFV 208
             D + R R R+ V
Sbjct: 191 AKDDYTRNRFRKTV 204


>gi|259047954|ref|ZP_05738355.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella
           adiacens ATCC 49175]
 gi|259035374|gb|EEW36629.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella
           adiacens ATCC 49175]
          Length = 457

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 105/221 (47%), Gaps = 13/221 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++AVSGG DSM LL A+  +  D +  K       V++ LR  + DE + V   C   +I
Sbjct: 22  VLAVSGGVDSMVLLNAMALLFEDHA--KDHIVVAHVNYGLRAQSMDEEQLVRRFCKSRQI 79

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              + ++K +K +    +  R  RY    E  K   A  ++ AH  DDQLET+ M+  R 
Sbjct: 80  PFEIKNFKETKEEKASESILRNFRYEFFEEVLKKHQAHYLVVAHHQDDQLETILMKWSRG 139

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +  GLSGM + I     + I RPFL   ++++        + + ED SN  D + R 
Sbjct: 140 STLE--GLSGMKE-IRQVKGMTILRPFLSLNKKELYQEAETHQVPYLEDESNESDNYTRN 196

Query: 203 RVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           R R     F+++ + +A       FQ     + +AVA L+P
Sbjct: 197 RYRHHVVPFLKEENPNA----GSHFQKSAQMIADAVACLMP 233


>gi|119714705|ref|YP_921670.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614]
 gi|119535366|gb|ABL79983.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614]
          Length = 321

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 104/214 (48%), Gaps = 16/214 (7%)

Query: 1   MFLSP-IESVRFFVR---SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           M L P I +VR  VR   + V P   ++VA SGG+DS+ LL A  +V   R  G  +   
Sbjct: 1   MSLHPAIAAVRLAVRRALAHVDPGRTVVVACSGGADSLALLAA--TVFEGRRAG-WRVVG 57

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHA 114
            +VDH L+  + D   +V    + L    +V +  +      G  AAAR+ARYA++ + A
Sbjct: 58  ATVDHGLQPGSADHAAHVVRQMAALGADETVAATVHVEAAGQGPEAAARQARYAVLDQLA 117

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +A  ++  HT DDQ ETV +   R     G  L+GM  +  +D      RP L   R
Sbjct: 118 ERFDADAVLLGHTRDDQAETVLLGLAR--GSGGRSLAGMRRS--FDR---FVRPLLDLSR 170

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            D  +      I +  DP N D  F RVRVRR V
Sbjct: 171 ADTATACQVAGIEFWSDPHNEDPAFTRVRVRRSV 204


>gi|326794452|ref|YP_004312272.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1]
 gi|326545216|gb|ADZ90436.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1]
          Length = 431

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 94/213 (44%), Gaps = 32/213 (15%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISVDHCLRETAK 67
           +F  R       I VA SGG DS  LL  + S L   +  +  I+ SAI V H + E A 
Sbjct: 13  QFLPRENNRAVTIWVAYSGGLDSEALLHLVASELESIESLYKGIRLSAIHVHHGVSEHAD 72

Query: 68  DEVRYVSDVCSRLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
             V +    C+ L I           V S++N         AAREARY +  +H +  + 
Sbjct: 73  SWVEHCKTSCAALGIPLIVEKVVIEGVASFEN---------AAREARYEVFRKHLQMND- 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRRE 175
            +++ AH  +DQ ETV  R +R    KG+G       + D I+Y       RP L C R 
Sbjct: 123 -ILLQAHHANDQAETVLFRLERGTGLKGLGGIPSSRPLADAIIY-------RPLLNCSRF 174

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            I  +    N+ W ED SN D  + R  +R  V
Sbjct: 175 HIEQYAYSCNLKWIEDESNQDQAYRRNFLRHSV 207


>gi|289450034|ref|YP_003475216.1| tRNA(Ile)-lysidine synthetase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184581|gb|ADC91006.1| tRNA(Ile)-lysidine synthetase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 483

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 26/202 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +++VA SGG+DS+ LL  LH +    +  K K   I  +H LR  A +E   V  +   L
Sbjct: 32  NLVVACSGGADSLALLYVLHEI---STVVKFKLEVIHFNHGLRLEAAEEAAAVETIARSL 88

Query: 81  RIAHSVVSWKNSKPQT------------GLMA-AAREARYALISEHAKTINAT---LIMT 124
           ++  ++  W      T            G+   A+R+ARYA    +     A+    I  
Sbjct: 89  QLPFTLGVWDRGNCATPSNSVGSNDFFDGISENASRQARYAFFKHYLAENCASERSYIAL 148

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ ETV+ R  R     G G++G+    + + +    RPFL+  +  ++S+L+  
Sbjct: 149 AHHLDDQAETVFFRLMR-----GCGINGL--QGMRNFSGRYFRPFLQTPQAKLKSYLISH 201

Query: 185 NISWCEDPSNTDDRFERVRVRR 206
           NI+W ED SN+D++F R  +R 
Sbjct: 202 NIAWSEDASNSDEKFTRNYLRH 223


>gi|262365357|gb|ACY61914.1| hypothetical protein YPD8_1229 [Yersinia pestis D182038]
          Length = 248

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 6/185 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  +L+ L   L  +   ++   AI + H L   A   V++    C + 
Sbjct: 24  HVLVGFSGGLDST-VLLHLLVCLRQQLIPELNIRAIHIHHGLNPQADSWVKHCMQQCDQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   VV       Q G+ AAAR ARY   S  A      +++TA   DDQ ET  +  +
Sbjct: 83  KIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G  LS M   + +  +  + RP L   RE + ++   + + W ED SN DDRF+
Sbjct: 141 RGSGPAG--LSAMAAKMPF-AHSQLLRPLLAFSREILENYAQAQQLQWIEDDSNQDDRFD 197

Query: 201 RVRVR 205
           R  +R
Sbjct: 198 RNFLR 202


>gi|217957639|ref|YP_002336181.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187]
 gi|217067016|gb|ACJ81266.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187]
          Length = 476

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 180 VDYCHKLKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|295694779|ref|YP_003588017.1| tRNA(Ile)-lysidine synthetase [Bacillus tusciae DSM 2912]
 gi|295410381|gb|ADG04873.1| tRNA(Ile)-lysidine synthetase [Bacillus tusciae DSM 2912]
          Length = 497

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 100/194 (51%), Gaps = 15/194 (7%)

Query: 19  PAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSD 75
           P H +++AVSGG DSM + + L   LS    G + FS +   VDH +R  + DE R+V  
Sbjct: 17  PLHRVVLAVSGGVDSM-VAMDLIGQLS----GALGFSVVVCHVDHRMRPESGDEQRFVEA 71

Query: 76  VCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              R  +A   V+     +  K      AAAR  RY  +++ A+   A  ++ AH  DDQ
Sbjct: 72  EAVRRGLAFQGVAVDVPGRIRKTGESPQAAARALRYEALTQCAREAGAEAVILAHHQDDQ 131

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +R  R  +  G+G  GM +   +  +LW  RPFL+  + ++ ++     I + ED
Sbjct: 132 AETVLLRLLRGTSPAGLG--GMNEVRRWG-DLWWLRPFLKVPKAELVAYATDHGIPYRED 188

Query: 192 PSNTDDRFERVRVR 205
           PSN   ++ R ++R
Sbjct: 189 PSNWSTKYLRNKIR 202


>gi|325473901|gb|EGC77089.1| hypothetical protein HMPREF9353_01437 [Treponema denticola F0402]
          Length = 454

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 22/197 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVSD 75
           P  +L+AVSGG+DSM +L A   + SD +    +   ++V+H +R   ET  D  ++V +
Sbjct: 23  PLRLLLAVSGGADSMAMLSAFLELKSDIN---AEIFVLTVNHNIRPEKETLGD-AQFVLN 78

Query: 76  VCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            C          I  + V  +    +TG+  AAR  RY    + A ++NA  I+TAH  +
Sbjct: 79  FCKNKCPCILAEIPKNTVFDEAGNRKTGIEDAARFLRYNEFEKAADSLNADYILTAHNKN 138

Query: 130 DQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           D  ETV MR  Q    E  MG+S      +        RP L   R +I  +L ++NI W
Sbjct: 139 DNYETVLMRLFQGSEPEALMGISPRRGRFI--------RPMLNISRSEIEEYLKEKNIPW 190

Query: 189 CEDPSNTDDRFERVRVR 205
            ED +N +  + R +VR
Sbjct: 191 REDATNLETSYLRNKVR 207


>gi|229136910|ref|ZP_04265538.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26]
 gi|228646575|gb|EEL02781.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26]
          Length = 480

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 184 VDYCHKLKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|42779142|ref|NP_976389.1| hypothetical protein BCE_0061 [Bacillus cereus ATCC 10987]
 gi|61216566|sp|Q73FE5|TILS_BACC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|42735057|gb|AAS38997.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 476

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 180 VDYCHKLKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|297528435|ref|YP_003669710.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3]
 gi|297251687|gb|ADI25133.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3]
          Length = 464

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 96/211 (45%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ VR F+     L   A ++V VSGG DS+ LL   H  LS R   K++  A  VDH  
Sbjct: 2   IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALL---HVFLSLRDEWKLQVIAAHVDHMF 58

Query: 63  R-ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++E+ +V   C   RI    A   V         G   AAR  RY   +E  +  
Sbjct: 59  RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    K  G +G+     +     I RPFL   R +I
Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGGYLI-RPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  Q  +S   DPSN +D + R R R  +
Sbjct: 176 EAYCRQMGLSPRRDPSNEEDDYTRNRFRHHI 206


>gi|91788722|ref|YP_549674.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666]
 gi|91697947|gb|ABE44776.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666]
          Length = 326

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 32/196 (16%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG+DS  LL+      +++  G+++  A+ + H L+  A D  R+   +C++L + 
Sbjct: 25  VALSGGADSTALLVGC----AEKWPGQVR--AVHIHHGLQAAADDFERHCQALCAQLNVP 78

Query: 84  HSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATL----IMTAHTFDDQLETVYM 137
            +V  V  +++ P      AAR+ARYA     A+   A      I  A   DDQ+ET+ +
Sbjct: 79  LAVKRVQARHA-PGESPEDAARKARYAAFGAVAREEWAQHAIKDIAIAQHADDQVETMLL 137

Query: 138 RSQRDYAEKGMGLSGMC--------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
              R     G GL G+         D I+Y       RP L      +R++L++R + W 
Sbjct: 138 ALSR-----GAGLPGLAAMPARWERDGIVYH------RPLLAVPGALVRAWLVERGLPWV 186

Query: 190 EDPSNTDDRFERVRVR 205
           EDP+NTD+RF R R+R
Sbjct: 187 EDPTNTDERFTRNRIR 202


>gi|145638685|ref|ZP_01794294.1| pyridoxine kinase [Haemophilus influenzae PittII]
 gi|145272280|gb|EDK12188.1| pyridoxine kinase [Haemophilus influenzae PittII]
          Length = 430

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 150/327 (45%), Gaps = 24/327 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L + A    ++  D+C +L
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSQNADCWAKHCQDLCDQL 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIPLIIERVQVDKT-NGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  + ++  +  ++W  D SN D+R++
Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +  I      I N  
Sbjct: 193 ----RNFLRNEILPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337
           R  + L++T+   +L    L  E+ T+
Sbjct: 308 RYQDSLYLTKRFSDLTKYCLKLEQNTL 334


>gi|206977928|ref|ZP_03238815.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97]
 gi|222093833|ref|YP_002527882.1| cell cycle protein [Bacillus cereus Q1]
 gi|206743834|gb|EDZ55254.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97]
 gi|221237880|gb|ACM10590.1| cell cycle protein [Bacillus cereus Q1]
          Length = 476

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCKGLEVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 180 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|188584721|ref|YP_001916266.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349408|gb|ACB83678.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 509

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 118/281 (41%), Gaps = 38/281 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           +LV VSGG DS+ LL  L+ +  +  F   K     ++H  R+ +A+++  +V  +   L
Sbjct: 21  VLVGVSGGPDSVALLHVLYELRQELQF---KLVVSHLNHGFRDKSAEEDADFVKKLAEDL 77

Query: 81  RI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +            +++    PQ G    AR  RY    + AK   AT +   H  DDQ+
Sbjct: 78  ELPIIYDKWQVKDYINYYKLSPQQG----ARIQRYKFFEQAAKDFGATKLALGHHIDDQV 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET ++R  R    +  GLSGM      + +L + RP L   + +I+ +L    + +  DP
Sbjct: 134 ETFFLRLIRGAGTQ--GLSGMQFIRKLNNDLLLIRPLLEVSKSEIKEYLQTNKLKYKIDP 191

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +N +  + R +VR  +  +           FQD+   +N  +         +    ++  
Sbjct: 192 TNQETNYLRNKVRHEILPV-----------FQDINPNINERL---------LETMELLKE 231

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
             D LN  +  L+   +V             Y+  ER +LF
Sbjct: 232 ENDYLNKAANELYQKSQVDTGRSQNNTKPLAYQGQERELLF 272


>gi|300172734|ref|YP_003771899.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887112|emb|CBL91080.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811]
          Length = 435

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 16/194 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           + A ++VAVSGG DS+ LL  L   L D      K     V++ LRE +  + ++V  + 
Sbjct: 14  WEATVIVAVSGGVDSVVLLHTLRQQLPD-----AKLVVAHVNYHLREESDADEKFVHHLA 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +        +W N  P   +   AR+ RY    + A   + T ++ AH  DDQ ETV +
Sbjct: 69  DKYHAIFEQTAWLNV-PDIAVEKQARDFRYQFFEQLASKYHTTTVVVAHHADDQAETVLL 127

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R    + M L+GM        N  I RPFL   ++++ S+  + N++W ED +N D 
Sbjct: 128 KLIR--GGQLMQLAGMSQQ-----NRRIVRPFLCITKQELVSYAQKHNLNWHEDKTNHDA 180

Query: 198 RFERVRVRRFVRDI 211
            +     R F+R I
Sbjct: 181 MY---TPRNFLRQI 191


>gi|261344719|ref|ZP_05972363.1| tRNA(Ile)-lysidine synthetase [Providencia rustigianii DSM 4541]
 gi|282567161|gb|EFB72696.1| tRNA(Ile)-lysidine synthetase [Providencia rustigianii DSM 4541]
          Length = 453

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 16/187 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV  SGG DS  LL AL+  L    F  ++  AI V H L   A     + +++C +  
Sbjct: 22  ILVGFSGGIDSTVLLHALYQ-LKQSHFPSLQVRAIHVHHGLNMRADKWEMHCAELCEQWN 80

Query: 82  IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I     H  V   N+    G+ AAAR+ARY    +  + +   +I+TA   DDQ ET  +
Sbjct: 81  IPFVCHHVTVDASNN----GVEAAARDARYQAYRD--ELLQNEIIVTAQHLDDQAETFLL 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +R       GLS M ++  +D    N ++ RP L   R+++  ++ +  + W ED SN
Sbjct: 135 ALKR--GSGPAGLSAMRESQPFDATRGNTYLLRPLLDISRQELERYMQEYALPWVEDDSN 192

Query: 195 TDDRFER 201
            DDR++R
Sbjct: 193 QDDRYDR 199


>gi|229159237|ref|ZP_04287262.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803]
 gi|228624252|gb|EEK81053.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803]
          Length = 480

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 106/211 (50%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  +   + +     VDH  
Sbjct: 10  VEKVDDFVKQHDVLEERSTIVVGVSGGPDSLALLYYL---LEKKEAKRWEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRSFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  + N+    DPSN  + + R R+R++V
Sbjct: 184 INYCNKLNVIPRIDPSNKKEVYTRNRLRKYV 214


>gi|169825696|ref|YP_001695854.1| tRNA(Ile)-lysidine synthase [Lysinibacillus sphaericus C3-41]
 gi|168990184|gb|ACA37724.1| tRNA(Ile)-lysidine synthase [Lysinibacillus sphaericus C3-41]
          Length = 468

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 11/193 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVC-- 77
           H+L+AVSGG DSM LL   H  +  +    I+  A+ VDH LR  A  E R +V   C  
Sbjct: 22  HLLIAVSGGVDSMALL---HYFVQTKEHWNIRVEAVHVDHMLRGEASAEDRAFVQKYCDD 78

Query: 78  SRLRIAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + + +  + +S     +K    +    R  RY    E     NA  ++TAH  DDQLE+V
Sbjct: 79  NGVYLHATAISIPTILAKENGNIQLICRRERYRYFKEVLYETNANKLVTAHHADDQLESV 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            M   ++     M   G+     ++    I RPFL   + +I  +LL++ +++ ED SN+
Sbjct: 139 LMALTKNATMNSM--QGIRPQRNFEGKTLI-RPFLTVTKTEIGEYLLRKGLNYREDASNS 195

Query: 196 DDRFERVRVRRFV 208
            D + R R R  V
Sbjct: 196 KDTYVRNRFRHHV 208


>gi|58584411|ref|YP_197984.1| ATPase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|75498061|sp|Q5GTD2|TILS_WOLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|58418727|gb|AAW70742.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control, MesJ [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 431

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 12/197 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           VY   + VAVSGG DS+ LL  + S    R        A++V+H LR  +++EV +V   
Sbjct: 16  VYNNKVAVAVSGGIDSIVLLHLITSWAEKRQCPPP--IALAVNHGLRPESQEEVEFVVSY 73

Query: 77  CSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              L +  S +++WK    +  + + AR+ARY L++E  K  +   +  AH  DDQ ET 
Sbjct: 74  AKELGVKKSFILNWKRQNIKGNVQSQARKARYELLTEWCKNNDVKHLFIAHHKDDQAETF 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDP 192
            +R      E+G GL G+  ++ Y  +L    + RP L   R  I+ +     + W ED 
Sbjct: 134 LLR-----LERGSGLDGL-SSMDYKSSLNGVCMLRPLLSFSRSRIKKYADFYRLKWVEDR 187

Query: 193 SNTDDRFERVRVRRFVR 209
           SN   +++R   R  ++
Sbjct: 188 SNQSLKYKRTLYRNLLK 204


>gi|251792238|ref|YP_003006960.1| tRNA(Ile)-lysidine synthase [Aggregatibacter aphrophilus NJ8700]
 gi|247533627|gb|ACS96873.1| tRNA(Ile)-lysidine synthase [Aggregatibacter aphrophilus NJ8700]
          Length = 436

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 16/190 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+  SGG DS  LL AL + L +      +  AI + H L   A     +  ++C +
Sbjct: 18  TQFLIGFSGGLDSTALL-ALFAKLRENQ-PHFQLRAIHIHHGLSSNADAWATHCENLCRQ 75

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +I   ++   N     G+ A AR+ARY  I++H   +    + TAH   DQ ET ++  
Sbjct: 76  FQIP-LLIQRVNVNIANGIEAGARQARYEAIAQH--ILPQEWLATAHHLQDQTETFFLAL 132

Query: 140 QRDYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +R     G GL G+      + +Y  N+ I RP L   R+ + +F+ Q+ I+W ED SN 
Sbjct: 133 KR-----GSGLQGLSAMQAQSTVY--NVPIFRPLLSFSRQQLLNFVQQQGITWIEDESNA 185

Query: 196 DDRFERVRVR 205
           D++++R  +R
Sbjct: 186 DNQYDRNFLR 195


>gi|225027805|ref|ZP_03716997.1| hypothetical protein EUBHAL_02064 [Eubacterium hallii DSM 3353]
 gi|224954855|gb|EEG36064.1| hypothetical protein EUBHAL_02064 [Eubacterium hallii DSM 3353]
          Length = 513

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 27/291 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           IL+ +SGG+DS+ L       L+ R    +K  A+ ++H LR E AK +  +V D C + 
Sbjct: 25  ILLGISGGADSVCLA---RYFLARREALSLKLYAVHINHMLRGEEAKRDEEFVQDFCHKW 81

Query: 80  ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
              L + +  +  ++ + +     A R ARY    ++AK  +   I  AH  +D  ET+ 
Sbjct: 82  NLSLNVEYRNIKEESRQKKCSEEEAGRIARYECFEKYAKEYHCGKIAVAHHQNDAAETIL 141

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G G  GM   +   +N  I RPFL   RE+I   L     ++ +D +NT+
Sbjct: 142 FRMLR-----GTGPQGMAGIL--PVNGKIIRPFLCLSREEIMDILQNIGQNYVDDSTNTN 194

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           + + R  +R  +     H          +L +++   +A + P+   ++  ++IA  Q  
Sbjct: 195 EEYSRNYIRHRILPEMEHVNQKAAAHISELGMQMQELLAYVTPQMEKLYNENVIANEQGE 254

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
           L ++      +            SL   + M R MLF  SG R  +S+  V
Sbjct: 255 LFLEEKTFSVM------------SLFEQKEMMRRMLFEISGHRKDISLVHV 293


>gi|229027910|ref|ZP_04184065.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271]
 gi|228733424|gb|EEL84251.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271]
          Length = 480

 Score = 83.2 bits (204), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKEHSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 184 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|52145153|ref|YP_081675.1| cell cycle protein [Bacillus cereus E33L]
 gi|61216463|sp|Q63HD6|TILS_BACCZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51978622|gb|AAU20172.1| cell cycle protein [Bacillus cereus E33L]
          Length = 476

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKEHSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 180 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|68249007|ref|YP_248119.1| putative cell cycle protein MesJ [Haemophilus influenzae 86-028NP]
 gi|81336582|sp|Q4QND8|TILS_HAEI8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|68057206|gb|AAX87459.1| putative cell cycle protein MesJ [Haemophilus influenzae 86-028NP]
          Length = 430

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 149/345 (43%), Gaps = 40/345 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  ++C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLCQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQNLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I +H +     +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQI--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R     G GL G+      ++L+ +   I RP L   R  +  +  Q  ++W  D SN D
Sbjct: 136 R-----GSGLQGLSAMQQQSVLFGMP--IFRPLLGFTRPQLEDYAQQEKLNWVTDESNED 188

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R++    R F+R+  L  L  +   F DL V+ +        + +   +  I      I
Sbjct: 189 NRYD----RNFLRNEILPKLRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQI 243

Query: 257 LNIDSTLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGR 306
            N    L F  Y L    A     +   Q+ +P  R + +++   +F K        +  
Sbjct: 244 KNQFKLLQFRQYSLAKQTALLRMWLAKNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVN 303

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
            VI R  + L++T+   +L    L  E+  +        NL D L
Sbjct: 304 KVIRRYQDSLYLTKPFSDLTKCTLKLEQNML--------NLPDDL 340


>gi|258424455|ref|ZP_05687334.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9635]
 gi|257845324|gb|EEV69359.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9635]
          Length = 431

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASNEEARFLEAYCDRH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|160902337|ref|YP_001567918.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95]
 gi|189035968|sp|A9BJK2|TILS_PETMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|160359981|gb|ABX31595.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95]
          Length = 311

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 16/189 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ VSGG DSM LL  +  +     F   + S   ++HC+RE A ++  +V   C +L+
Sbjct: 26  ILLGVSGGKDSMSLLHVMSKLSKTMGF---EISVAHLNHCMREEADNDEAFVRQACWKLK 82

Query: 82  IAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           I        V ++ + K + G+  A R+ RY    E  + ++   I TAH  DD  ET+ 
Sbjct: 83  IPFFSKKVDVFTY-SKKNKVGVEVAGRKLRYEFFYETLRRLSYNKIATAHHMDDLFETMI 141

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G G+ G+   I   +   I++P L    E+I++++   NI + ED  N  
Sbjct: 142 YRILR-----GTGIYGLGGLI--PIEEEITKPMLCVDLEEIKNYVTINNIEYVEDKYNYS 194

Query: 197 DRFERVRVR 205
             + R ++R
Sbjct: 195 LDYARNKIR 203


>gi|331661562|ref|ZP_08362486.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA143]
 gi|331061477|gb|EGI33440.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA143]
          Length = 432

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRAENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L C R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLACTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|281411798|ref|YP_003345877.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10]
 gi|281372901|gb|ADA66463.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10]
          Length = 431

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 36/254 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LVAVSGG DSM LL  L          KIK +A  +DH +RE+++ +  +V  +C + 
Sbjct: 24  HVLVAVSGGIDSMTLLYVLKKF---SPLLKIKITAAHLDHRIRESSRRDREFVERICRQW 80

Query: 81  RIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +            WK+S     L   ARE RY  +   AK + AT I  AH  +D LET
Sbjct: 81  NVPVETSEVDVPSLWKDS--GKTLEEIARELRYDFLRRTAKKVGATKIALAHHKNDLLET 138

Query: 135 VYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           V  R  R     G+  +S   +  +        RPFL  +R +I  +  ++ + +  D +
Sbjct: 139 VVHRLIRGTGPLGLACISPKREEFI--------RPFLVFKRSEIEEYAREKGVPYVVDET 190

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D ++     R F+R    H +   MK   +L   V +AV  L+   +T+ +R+ +  +
Sbjct: 191 NYDVKY----TRNFIR----HRIVPLMK---ELNPTVEDAVYRLVS--VTLLLRNFVERT 237

Query: 254 -QDILNIDSTLLFY 266
            QD   ++  + FY
Sbjct: 238 VQDF--VERNVYFY 249


>gi|324324053|gb|ADY19313.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 476

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 180 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|229153842|ref|ZP_04281973.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342]
 gi|228629646|gb|EEK86342.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342]
          Length = 480

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 184 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|269797565|ref|YP_003311465.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008]
 gi|269094194|gb|ACZ24185.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008]
          Length = 332

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 14/198 (7%)

Query: 17  VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++P +  ILVA SGGSDSM LL  L  + + R     +     VDHC+R  +KDEV ++ 
Sbjct: 19  IFPENCRILVACSGGSDSMALLHLLQDIATHR-HTVYELGVAIVDHCIRPESKDEVLWLR 77

Query: 75  DVCSRLRIAHSVVSW---KNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                L +      +   K S+ Q        R+ RY  +++ A++     I  AH  DD
Sbjct: 78  TQVDVLGLPFYTAVFDVPKLSQAQKLSEETIGRQVRYQWLTDIAQSEGYDYIAVAHHKDD 137

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           Q E++     R     G GL+G+     +  D  + + RP L   +E++  +L +++IS+
Sbjct: 138 QAESILAHLIR-----GTGLNGLTGMAVVSNDYTVPVVRPLLDVTKEELLLYLKEKDISY 192

Query: 189 CEDPSNTDDRFERVRVRR 206
           C D +N D R++R R+R 
Sbjct: 193 CIDSTNEDVRYQRNRIRH 210


>gi|148269484|ref|YP_001243944.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1]
 gi|147735028|gb|ABQ46368.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1]
          Length = 419

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 36/254 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LVAVSGG DSM LL  L          KIK +A  +DH +RE+++ +  +V  +C + 
Sbjct: 12  HVLVAVSGGIDSMTLLYVLKKF---SPLLKIKITAAHLDHRIRESSRRDREFVERICRQW 68

Query: 81  RIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +            WK+S     L   ARE RY  +   AK + AT I  AH  +D LET
Sbjct: 69  NVPVETSEVDVPSLWKDS--GKTLEEIARELRYDFLRRTAKKVGATKIALAHHKNDLLET 126

Query: 135 VYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           V  R  R     G+  +S   +  +        RPFL  +R +I  +  ++ + +  D +
Sbjct: 127 VVHRLIRGTGPLGLACISPKREEFI--------RPFLVFKRSEIEEYAREKGVPYVVDET 178

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D ++     R F+R    H +   MK   +L   V +AV  L+   +T+ +R+ +  +
Sbjct: 179 NYDVKY----TRNFIR----HRIVPLMK---ELNPTVEDAVYRLVS--VTLLLRNFVERT 225

Query: 254 -QDILNIDSTLLFY 266
            QD   ++  + FY
Sbjct: 226 VQDF--VERNVYFY 237


>gi|312880244|ref|ZP_07740044.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
 gi|310783535|gb|EFQ23933.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
          Length = 442

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 20/190 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +L+A+SGG DS    +AL  +L  R + + +     +DH +R+ +  +  +VS++ SR 
Sbjct: 22  EMLIAISGGGDS----VALAGLL--RRYWRGRQVWAHLDHGIRKESSRDALFVSELASRW 75

Query: 81  RIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            I   V   + S P        L  A R  RY  +   A   +   I  AHT DDQ ET+
Sbjct: 76  GIPCVVE--RVSLPALRERGESLEMAGRRVRYGFLERTASNASLAFIALAHTADDQAETL 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +     +  +G G+ G+        N W+ RP    RRE++RSFL +  ISW ED SN 
Sbjct: 134 LL-----HLARGTGIWGLAGMPERRGN-WV-RPLATFRREELRSFLREEGISWVEDLSNQ 186

Query: 196 DDRFERVRVR 205
           D  F R RVR
Sbjct: 187 DRMFLRNRVR 196


>gi|295702306|ref|YP_003595381.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319]
 gi|294799965|gb|ADF37031.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319]
          Length = 458

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V +SGG DS+ LL  L S+   +S   I   A  VDH  R E ++ ++ YV + C +L
Sbjct: 21  VVVGISGGPDSLALLHFLWSLKEQKSLTII---AAHVDHMFRGEESQQDMEYVQNYCKQL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I        V+    + +     AARE RY   +   K   A  +   H  DDQ+ET+ 
Sbjct: 78  NIKCEAKQIDVTAYQKERKLSSQVAARECRYTFFTHVMKKHKANFLALGHHGDDQIETML 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R       G +GM     Y  + +I RPFL   +E+I  +     ++   DPSN  
Sbjct: 138 MRMVR--GSTMNGYAGMQPKRPY-ADGFIIRPFLAVTKEEINRYCKLHGLTPRIDPSNEK 194

Query: 197 DRFERVRVRRFV 208
           D + R R R +V
Sbjct: 195 DSYTRNRFRHYV 206


>gi|117923751|ref|YP_864368.1| tRNA(Ile)-lysidine synthetase [Magnetococcus sp. MC-1]
 gi|117607507|gb|ABK42962.1| tRNA(Ile)-lysidine synthetase [Magnetococcus sp. MC-1]
          Length = 349

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 13/191 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +LVAVS G DS  LL  L      R        A   DH LR  AK ++ +V   C++
Sbjct: 28  APLLVAVSAGVDSSALLHLL------RLCYPGPLQAAHFDHALRPCAKQDLAHVQQQCAQ 81

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   V  W     +  L A AR+ARY  +++ A  + A  I  AH  +DQ ET+  R 
Sbjct: 82  YAIPLHVGHWLPPAQKANLAAQARQARYRFLAQTAYGLKAPFIGIAHHQEDQAETLLERL 141

Query: 140 QRDYAEKGM-GLSGMCDTILYDL----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
               A  G+ GLSGM       +     + + RP L   ++++ S+L    I+W EDPSN
Sbjct: 142 LLRGA--GLKGLSGMRPLAPLPMAEFAQVQLLRPLLPFSKKELTSWLQGEQITWREDPSN 199

Query: 195 TDDRFERVRVR 205
            D R+ R  +R
Sbjct: 200 QDLRYTRNHIR 210


>gi|197334782|ref|YP_002156773.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11]
 gi|197316272|gb|ACH65719.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11]
          Length = 456

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 11/197 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V   H++VA+SGG DSM LL        ++   +++  A+ V+H L + A D     +  
Sbjct: 29  VKKPHLIVALSGGVDSMVLLRLAGMYAKEK---QLECMAVHVNHGLSKHASDWEVSCASY 85

Query: 77  CSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           C  L I   +  V+ K S PQ  L   AR+ARY ++ +H +    +L++T    DDQ+ET
Sbjct: 86  CEELDIPLYIERVNLKVS-PQESLEEVARKARYHVLEKHMRA--NSLLLTGQHQDDQVET 142

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            ++  +R       GLS M   I      +  RP L   R+ I  +  Q  ++W ED SN
Sbjct: 143 FFLALKR--GSGPAGLSSMPSIIPLKTG-YKCRPLLFTSRQHITEYAQQHQLTWVEDESN 199

Query: 195 TDDRFERVRVRRFVRDI 211
            D RF+R  +R  +  +
Sbjct: 200 QDTRFDRNFLRHEITPV 216


>gi|331092502|ref|ZP_08341324.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400723|gb|EGG80326.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 470

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V VSGG+DS+ LL  L  +     F  I    + V+H LR E A+ + +YV ++C + 
Sbjct: 21  VVVGVSGGADSVCLLFVLMELQKTIGFDII---VVHVNHLLRGEDAESDEKYVRELCEKY 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V    V W     +  L  A R  R     +  K    T I  AH  +D  ET+ 
Sbjct: 78  HLTCEVYRENVEWIAKNKRESLEEAGRNVRREAFEQTLKKYGGTKIALAHHRNDNAETLL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   R     G GL+G+        N    RP L   R++I  +LL+R I++C D +N  
Sbjct: 138 MNLAR-----GSGLAGLGGMRPVKENRI--RPLLCLERKEIEEYLLKRQIAYCTDETNYS 190

Query: 197 DRFERVRVRRFV 208
           D + R RVR  V
Sbjct: 191 DAYTRNRVRNHV 202


>gi|228983319|ref|ZP_04143533.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229194454|ref|ZP_04321258.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293]
 gi|228589044|gb|EEK47058.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293]
 gi|228776433|gb|EEM24785.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 480

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 184 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|153872260|ref|ZP_02001203.1| cell cycle protein MesJ [Beggiatoa sp. PS]
 gi|152071275|gb|EDN68798.1| cell cycle protein MesJ [Beggiatoa sp. PS]
          Length = 435

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 14/194 (7%)

Query: 18  YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           YPA     VA SGG DS  LL AL  +  + ++ +++  AI + H L   A     +   
Sbjct: 28  YPATQCFWVAYSGGLDSRVLLHALAQLRHNNTYFQLR--AIHIHHGLHPKADQWATHCQQ 85

Query: 76  VCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           VC  L IA  V+  K  + P+  L A AR ARY  I++        ++ TA   DDQ ET
Sbjct: 86  VCEALTIACEVIRVKVGTGPRESLEANARTARYDAIAQ--VIAPDDVVFTAQHADDQAET 143

Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           V ++  R     G G++G+     +      W+ RP L   R  +  + L+ +I W ED 
Sbjct: 144 VLLQLLR-----GAGVAGLAAMPQVSRLAQGWLVRPLLGYTRTQLHDYALKAHIHWIEDS 198

Query: 193 SNTDDRFERVRVRR 206
           SN+D RF R  +R 
Sbjct: 199 SNSDTRFARNFLRH 212


>gi|222056506|ref|YP_002538868.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. FRC-32]
 gi|221565795|gb|ACM21767.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. FRC-32]
          Length = 459

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 100/207 (48%), Gaps = 22/207 (10%)

Query: 9   VRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           V  ++R+  L+ P   ++VAVSGG+DS+ LL     VL+     K++     ++HCLR  
Sbjct: 5   VNSYIRAHRLISPGDTVIVAVSGGADSVALL----DVLAGLRSSKLRLIVAHLNHCLRGS 60

Query: 64  ETAKDE--VRYVSD---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           E+  DE  VR ++    VC   +    +   + SK    L  A R ARY  + E A   N
Sbjct: 61  ESDADEAFVRKLAGGYGVCFVTKAVDVLALSRESK--MSLEEAGRVARYRFLKELAINCN 118

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  +  AH  DDQ ETV MR  R     G GL  M  T        I RP L   R +I 
Sbjct: 119 ARSVAVAHHADDQAETVLMRLIR--GAGGSGLRAMTSTTAG----LIIRPLLSVTRREIE 172

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
           S+L ++ + +  D SN D  F R R+R
Sbjct: 173 SYLDKKGLGYRTDSSNADLNFLRNRIR 199


>gi|170288158|ref|YP_001738396.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2]
 gi|226695551|sp|B1L8R5|TILS_THESQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|170175661|gb|ACB08713.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2]
          Length = 414

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 26/195 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFG---KIKFSAISVDHCLRETAKDEVRYVSDVC 77
           H+LVAVSGG DSM LL  L      R F    KIK +A  +DH +RE+++ +  +V  +C
Sbjct: 7   HVLVAVSGGIDSMTLLYVL------RKFSPLLKIKITAAHLDHRIRESSRRDREFVERIC 60

Query: 78  SRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            +  I            WK+S     L   ARE RY  +   AK + A+ I  AH  +D 
Sbjct: 61  RQWNIPVETSEVDVPSLWKDS--GKTLEEIAREVRYDFLKRTAKKVGASKIALAHHKNDL 118

Query: 132 LETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LETV  R  R     G+  +S   +  +        RPFL  +R +I  +  ++ + +  
Sbjct: 119 LETVVHRLIRGTGPLGLACISPKREEFI--------RPFLVFKRSEIEEYAREKGVPYVV 170

Query: 191 DPSNTDDRFERVRVR 205
           D +N D ++ R  +R
Sbjct: 171 DETNYDVKYTRNFIR 185


>gi|332994188|gb|AEF04243.1| cell cycle protein MesJ [Alteromonas sp. SN2]
          Length = 437

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 10/192 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  ++VA SGG DS  LL ALH     R        A+ + H L   A   +R+    C 
Sbjct: 24  PPLLVVAYSGGVDSSLLLHALHVF---RKQTSTPVHAVHIHHGLSNNADTWLRHCQSECD 80

Query: 79  RLRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +L I   H  V+  N   ++ L A AR+ARY ++ E   T N  L++  H  +DQLETV 
Sbjct: 81  KLSIPLTHYHVAVDNGARKS-LEAEARDARYKVLHEFCHTHNGVLLLGQHA-EDQLETVL 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++ +R    +G  LSGM      +  L + RP L  ++ DI     + ++ W  D SN D
Sbjct: 139 LQLKRGAGPQG--LSGMGAQQWRNGVLTL-RPMLALQKSDIVDAANRLDLQWVNDESNAD 195

Query: 197 DRFERVRVRRFV 208
           DR++R  +R  +
Sbjct: 196 DRYDRNFLRNQI 207


>gi|255262865|ref|ZP_05342207.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62]
 gi|255105200|gb|EET47874.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62]
          Length = 422

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 102/191 (53%), Gaps = 14/191 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGGSDS  LL+A   V   +S G +   A++VDH  R  AK E   VS++ + L 
Sbjct: 32  VGVAVSGGSDSTALLLAC--VEWAKSNG-VAVHAVTVDHGQRVEAKQEAIAVSELTAELG 88

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + HS+++ +  +      A AR+ARYA +++ A+     ++   HT DD  ET  MR  R
Sbjct: 89  VEHSILTLETLEAGANFQARARDARYAAMAQWAQARRLAVVAVGHTADDVAETFLMRLAR 148

Query: 142 DYAEKGMGLSGMCDTI----LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                G G+ G+   +     ++++ W+ RP L  +R+ +R FL  + I W +DPSN   
Sbjct: 149 -----GAGVDGLAQMVGSWTAHEMS-WV-RPLLGFKRQALRDFLTAQRIVWSDDPSNQSI 201

Query: 198 RFERVRVRRFV 208
           ++ R   R  +
Sbjct: 202 KYTRTAAREVL 212


>gi|317493166|ref|ZP_07951589.1| PP-loop family protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918826|gb|EFV40162.1| PP-loop family protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 439

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 6/182 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + ++VA SGG DS  LL AL + L  ++F  ++  A+ V H L   A   V +   VC +
Sbjct: 18  SQLMVAFSGGLDSTVLLHAL-AQLRMQNFPHLQLRAVHVHHGLSRYADLWVDHCESVCRQ 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V+  K    ++G+ AAAR+ARY  I++  +  +   ++TA   DDQ ET  +  
Sbjct: 77  WQVPLKVLRVKVDSQRSGVEAAARDARYHAIAD--EISHHETLLTAQHLDDQCETFLLAL 134

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R       GLS M   + +  +    RP L   R  +  +    ++ W ED SN DDRF
Sbjct: 135 KR--GSGPTGLSAMASHMPF-FSTEQLRPLLDISRAQLEEYAANYDLKWVEDDSNQDDRF 191

Query: 200 ER 201
           +R
Sbjct: 192 DR 193


>gi|313894633|ref|ZP_07828196.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440823|gb|EFR59252.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 332

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 14/197 (7%)

Query: 17  VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++P H  IL+A SGG DSM LL  L  + + R   K K     VDH +R  +KDEV ++ 
Sbjct: 19  LFPEHSRILIACSGGPDSMALLHLLQDIAAHR-HTKYKLGIAIVDHSIRPESKDEVLWLR 77

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM----AAAREARYALISEHAKTINATLIMTAHTFDD 130
           +    L ++    ++        L        R  RY  ++E A++     I  AH  DD
Sbjct: 78  NQVDALGLSFYTTTFDVPTLSKDLKLSEETVGRRVRYQWLNEIAQSEGYDYIAVAHHKDD 137

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           Q E++     R     G GL+G+     +  D ++ + RP L   + ++ ++L  R +++
Sbjct: 138 QAESILAHLIR-----GTGLNGLTGMAVVSNDYDIPVIRPLLDVTKAELLAYLADRKLTY 192

Query: 189 CEDPSNTDDRFERVRVR 205
           C D +N D R++R R+R
Sbjct: 193 CIDSTNDDIRYQRNRIR 209


>gi|168245005|ref|ZP_02669937.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194447470|ref|YP_002044226.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|254789044|sp|B4TK64|TILS_SALHS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|194405774|gb|ACF65993.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205336227|gb|EDZ22991.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 430

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 134/325 (41%), Gaps = 29/325 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+   G C      L L   RP LR  R+ +  + ++  + W ED SN DD ++ 
Sbjct: 132 GSGPAGLSAMGECSPFAGTLLL---RPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD- 187

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQD 255
              R F+R   L AL L  +++      V  +  +      L+ + L   +   I  ++ 
Sbjct: 188 ---RNFLR---LRALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEG 240

Query: 256 ILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308
            L +   +L   +R +A     +      +P   ++ER+   +   +     C+  G   
Sbjct: 241 TLRLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHE 300

Query: 309 IDR-RANFLWITRAVRNLPTLILYP 332
           I R ++   WI        T +++P
Sbjct: 301 IRRYQSQLWWIKTVAGQHETTVVWP 325


>gi|282915827|ref|ZP_06323595.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283768944|ref|ZP_06341853.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           H19]
 gi|282320318|gb|EFB50660.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283461125|gb|EFC08211.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           H19]
          Length = 431

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKDYQ----IYRPLLAVSKKEIKQFQERNHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|298528449|ref|ZP_07015853.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512101|gb|EFI36003.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 344

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 12/188 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           +L   SGG DS  L++A+H +    +   +K  A  +DH LR  A +++  V D CS   
Sbjct: 37  VLAGFSGGPDSAALVLAMHYLAPSLN---MKLEAAYLDHGLRREAGEDLALVQDTCSQLS 93

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +L +  S VS    + + G+   AR  RY  +   A+   A  ++T H  +D  E + M
Sbjct: 94  MKLHLGRSNVSRLAGRGRGGIEETARRLRYRYLHGVARKTGADYVLTGHHLNDLAEDILM 153

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R QR     G G  G+     Y     I RP L   R+ I  FL      +  D +N D 
Sbjct: 154 RLQR-----GTGWPGLSGMRAYVPERRILRPLLMIPRKCIMDFLETAGQGYVLDATNKDK 208

Query: 198 RFERVRVR 205
            F R RVR
Sbjct: 209 TFLRNRVR 216


>gi|160872844|ref|ZP_02062976.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella
           grylli]
 gi|159121643|gb|EDP46981.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella
           grylli]
          Length = 458

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 12/204 (5%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E + F ++     A   +A SGG DS  LL AL  +L        +  AI ++H L   +
Sbjct: 5   EKLAFLLKQYPVSACFWIAYSGGLDSHVLLYALSQLLPTE-----RLRAIHINHGLHIHS 59

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMT 124
               +     C +L I   +V+  + +P+TG  L A+ REARY  I +  K      ++T
Sbjct: 60  DKWAKICRHACEKLTIDCEIVT-LDIRPKTGESLEASLREARYHAIEK--KIPAGNFLLT 116

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  +DQ ET  ++  R    KG+     C  +    N+++ RP L   R+++ ++    
Sbjct: 117 AHHRNDQAETFLLQLFRGAGLKGLISMPFCRPLTN--NVYLMRPLLNFTRQELYAYAQTH 174

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
           +++W ED SN + RF R  +R  V
Sbjct: 175 HLTWIEDDSNKNQRFSRNFIRHQV 198


>gi|261417560|ref|YP_003251242.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61]
 gi|319765217|ref|YP_004130718.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52]
 gi|261374017|gb|ACX76760.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61]
 gi|317110083|gb|ADU92575.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52]
          Length = 464

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 95/211 (45%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ VR F+     L   A ++V VSGG DS+ LL   H  LS R   K++  A  VDH  
Sbjct: 2   IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALL---HVFLSLRDEWKLQVIAAHVDHMF 58

Query: 63  R-ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++E+ +V   C   RI    A   V         G   AAR  RY   +E  +  
Sbjct: 59  RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    K  G +G+     +     I RPFL   R +I
Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGGYLI-RPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  Q  +S   DPSN  D + R R R  +
Sbjct: 176 EAYCRQMGLSPRRDPSNEKDDYTRNRFRHHI 206


>gi|157690849|ref|YP_001485311.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032]
 gi|157679607|gb|ABV60751.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032]
          Length = 467

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 92/192 (47%), Gaps = 12/192 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V VSGG DSM LL      L+ R  G  +  A  VDH  R E +  ++ +V   C   
Sbjct: 20  VIVGVSGGPDSMLLL----HELNKRRKGSFQLIAAHVDHMFRGEESFVDLAFVEAYCKEQ 75

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    A   V+    +      AAARE RYA   +  +   A  I  AH  DDQ+ET+ 
Sbjct: 76  GIPFESARIQVTQYAKENHLNKQAAARECRYAFFRQLMERYKAQFIALAHHGDDQVETMM 135

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G+GL+G+     Y  + W+ RP +   ++D+ +   Q +I +  D SN  
Sbjct: 136 MRLARGTV--GIGLAGIQAKRPYQ-DGWLIRPLIGYSKDDVLTACEQAHIPYVIDQSNHT 192

Query: 197 DRFERVRVRRFV 208
           D + R R+RR +
Sbjct: 193 DDYLRNRIRRHI 204


>gi|118594638|ref|ZP_01551985.1| hypothetical protein MB2181_03180 [Methylophilales bacterium
           HTCC2181]
 gi|118440416|gb|EAV47043.1| hypothetical protein MB2181_03180 [Methylophilales bacterium
           HTCC2181]
          Length = 446

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A+SGG DSM L+ AL+ +  +    K+   A  + H L   A + + +    C +L 
Sbjct: 29  IDIALSGGCDSMVLMYALNQLKDEL---KLSIKAHYIHHGLSAYADEWLAFCEAACRKLN 85

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I   S+    N+ P  G+  AAR+ RY  +++    ++  +I TAH  +DQ ET+ ++  
Sbjct: 86  IPFDSMRVDTNTLPSLGIEGAARKLRYEALAQ----LSVGVIATAHHENDQAETLLLQLI 141

Query: 141 RDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R     G GL G+     YD   NLW  RP LR +R+ I  F     I + ED SN D R
Sbjct: 142 R-----GAGLKGLAAMPEYDKEKNLW--RPLLRVQRQVIEDFADIYEIVFIEDDSNEDTR 194

Query: 199 FERVRVRRFV 208
           F+R  +R+ +
Sbjct: 195 FDRNFLRKNI 204


>gi|168015333|ref|XP_001760205.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688585|gb|EDQ74961.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 569

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 96/207 (46%), Gaps = 27/207 (13%)

Query: 24  VAVSGGSDSMGL-LIALHSVLSDRSFGKI--KFSAISVDHCLRETAKDEV----RYVSDV 76
           +AVSGG DSM L L+A       R  G    + + I VDH LR  +  E     R+V D+
Sbjct: 2   IAVSGGPDSMALCLVAKEWWKGFRESGVFAERPTGIVVDHGLRPESAAEALQVQRWVLDL 61

Query: 77  ---CSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              C  L+       W N +P +G L  AAR ARY+L+ +         ++T H  DDQ 
Sbjct: 62  GFECHVLK-----CDWLNGRPDSGHLQEAARNARYSLMEQTCWKHGIGTLLTGHHADDQA 116

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY---------DLNLWISRPFLRCRREDIRSFLLQ 183
           E   MR  R      +GL+GM     +            L + RP L+  ++D+ +   +
Sbjct: 117 ELFMMRLARSSGI--IGLAGMASRSYFFSRRPVSQDQTGLLLVRPLLQFSKQDLYTVCKK 174

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRD 210
               W EDP+N + +F R R+R+ + D
Sbjct: 175 AGQEWIEDPTNFNHKFARNRIRQVLAD 201


>gi|237807600|ref|YP_002892040.1| tRNA(Ile)-lysidine synthetase [Tolumonas auensis DSM 9187]
 gi|237499861|gb|ACQ92454.1| tRNA(Ile)-lysidine synthetase [Tolumonas auensis DSM 9187]
          Length = 441

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 98/204 (48%), Gaps = 12/204 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           SV   +  L+ P H+LV  SGG DS  LL  L   +S R        A+ V H L   A 
Sbjct: 4   SVFSVLDQLIRPGHLLVGFSGGLDSRVLLELLARYISQRD--GFSLQAVHVHHGLNPKAD 61

Query: 68  DEVRYVSDVCSRLR---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
             + + + VC  L    IA  V   K  K +  L   AR+ARY +  ++       +++T
Sbjct: 62  QWLTHCAQVCDVLTVPFIAKRVEIEK--KARQSLEDLARQARYDVFRQNLP--EGGVLLT 117

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQLET+ +  +R    +G  LS M     +     + RP L   R+ +  + + +
Sbjct: 118 AHHQDDQLETLLLALKRGSGPRG--LSAMPVKTAFAGGHLV-RPLLTFSRQQLSDWAISQ 174

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
            +SW ED SN DDRF+R  +R+ V
Sbjct: 175 QLSWIEDDSNQDDRFDRNFLRQKV 198


>gi|229170914|ref|ZP_04298517.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3]
 gi|228612580|gb|EEK69799.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3]
          Length = 480

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 67  RGDESHEDLQFVQDLCRGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 184 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 214


>gi|218885398|ref|YP_002434719.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756352|gb|ACL07251.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 433

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 89/191 (46%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           +++ VSGG+DS+ LL+ L  +      G ++  A  +DH LR  + DE R V+ +C RL 
Sbjct: 81  LVIGVSGGADSLCLLLVLRWLAP--RLG-LRLHAAVLDHGLRPESADEARAVAALCRRLG 137

Query: 81  ---RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              R+  + VS   ++   GL  A R ARYA      +   A    TAH  DD  E V +
Sbjct: 138 VPCRVQRADVSDLAARECCGLEDAGRRARYAFFEAERQRTGADWTCTAHQADDLCEDVLL 197

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G  G+      D    I RP L   R DI +FL    +    DPSN D 
Sbjct: 198 RLVR-----GTGWPGLGGMAAMDPARRILRPLLTTERRDIDAFLADLGVQPVRDPSNADP 252

Query: 198 RFERVRVRRFV 208
            + R R+R  V
Sbjct: 253 AYRRNRLRHQV 263


>gi|254724204|ref|ZP_05185989.1| cell cycle protein [Bacillus anthracis str. A1055]
          Length = 476

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V  +C  L +    +    S+   Q G+ A  AARE RYA +    K  
Sbjct: 63  RGDESHEDLQFVQGLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  +  I    DPSN  + + R R+R++V
Sbjct: 180 VNYCNELKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|58040122|ref|YP_192086.1| cell cycle protein MesJ [Gluconobacter oxydans 621H]
 gi|61216387|sp|Q5FQB6|TILS_GLUOX RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|58002536|gb|AAW61430.1| Cell cycle protein MesJ [Gluconobacter oxydans 621H]
          Length = 398

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 25/327 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + +AVSGG+DSM L     + L+ R   +    A  VDH LR  +  E +      + 
Sbjct: 14  APVGLAVSGGADSMAL-----AFLARRW--RRNVVAFVVDHALRPESAAEAQLTVHRLAG 66

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + +   +++     P+  +   AR AR+  +     +     ++ AH   DQ ETV+MR 
Sbjct: 67  MNVKARLLT-LAPFPKGRMQERARHARFEALEAACVSEGCLDLLVAHHAGDQDETVWMRH 125

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
              +A   +GLSG+   +     + + RP L      +R  L   N+ W EDPSN + RF
Sbjct: 126 L--HASGPLGLSGI-QPVSVRGRIRLVRPLLTFPTARLRLTLQAENLPWIEDPSNANRRF 182

Query: 200 ERVRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           ERVR+R+    +    A  L+    Q+ R+++   +A  + ++   + +  + + Q+   
Sbjct: 183 ERVRLRQDLTPEQRQEARVLQQDALQE-RLRLEAELAEELGRHAVWYSQGWVFLGQE--G 239

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV-VIDRRANFLW 317
           +D   L  L+R+        +S   YR     +  L +   G +S  +V    R  N + 
Sbjct: 240 VDEEALSVLIRL--------VSGSAYRPAREAVRTLMTQGYGTLSGVQVRPAGRFGNGII 291

Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQF 344
           + R  R L   +   +   VWDGR++ 
Sbjct: 292 LVREERALGPFV-PAKAGAVWDGRWRL 317


>gi|89100508|ref|ZP_01173369.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
 gi|89084774|gb|EAR63914.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
          Length = 462

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 84/192 (43%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LV VSGG DS+ LL   H +   R     + +AI  DH  R E +  E R+V   C   
Sbjct: 22  VLVGVSGGPDSLALL---HLLWKKRKVWGAEPAAIHFDHMFRGEESYQEARFVQSFCEER 78

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   +    VS    +       AARE RY    E  K   A+ +   H  DDQ+ET+ 
Sbjct: 79  NIPFEMRREDVSAYMKESGKSSQTAARECRYRFFEEAMKASGASYLALGHHGDDQMETIL 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G   SG+  +  +     I RPFL   R +I  + L   +    DPSN  
Sbjct: 139 MRLTR--GSTGEARSGIPFSRPFGGGEII-RPFLCLERGEIEEYCLSNELDPRRDPSNEK 195

Query: 197 DRFERVRVRRFV 208
           D + R R RR V
Sbjct: 196 DVYSRNRFRRNV 207


>gi|254514885|ref|ZP_05126946.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium NOR5-3]
 gi|219677128|gb|EED33493.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium NOR5-3]
          Length = 413

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + VA SGG DS  LL AL +     SF  +  +A+  +H L + A+   R+ +++C +
Sbjct: 8   AGVYVAYSGGLDSTVLLHALAT-----SFSGL-VTALHANHGLHDDAELWARHCAELCDQ 61

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +++      + +    G+ AAAR ARY    E     +A L+M AH  DDQ ET+ +R 
Sbjct: 62  WKVSFRSTRLQLNDTGDGVEAAARSARYHWF-ETCVEADAVLLM-AHHQDDQAETLLLRL 119

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+G       + +   L   RP L   R D+  +  Q  +SW +DPSNTD RF
Sbjct: 120 LRGAGPQGLGSIPTTRALGHGSLL---RPLLDIPRSDLAGYAAQHKLSWIDDPSNTDTRF 176

Query: 200 ERVRVRRFV 208
           +R  +R+ V
Sbjct: 177 DRNYLRQEV 185


>gi|29654800|ref|NP_820492.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 493]
 gi|154706200|ref|YP_001423893.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|164686109|ref|ZP_01946931.2| tRNA(Ile)-lysidine synthase [Coxiella burnetii 'MSU Goat Q177']
 gi|165919314|ref|ZP_02219400.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 334]
 gi|212219227|ref|YP_002306014.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuK_Q154]
 gi|61216625|sp|Q83BJ9|TILS_COXBU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29542068|gb|AAO91006.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii RSA 493]
 gi|154355486|gb|ABS76948.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|164601674|gb|EAX32419.2| tRNA(Ile)-lysidine synthase [Coxiella burnetii 'MSU Goat Q177']
 gi|165916974|gb|EDR35578.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 334]
 gi|212013489|gb|ACJ20869.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuK_Q154]
          Length = 449

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 9/203 (4%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +  F+ +L   ++  +A SGG DS  L+ A+  +  +  +   +  A+ ++H L   A
Sbjct: 15  EKLLKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEHPW---QLRALHINHGLNPKA 71

Query: 67  KDEVRYVSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            D   +   +C+RL+I   S     + +P   + A AR+ARYA I + A + N TL +TA
Sbjct: 72  NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYA-IFQQALSENETL-LTA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT +DQ ET  ++  R    KG  LS M           + RP L   R+D++ +  + N
Sbjct: 130 HTENDQAETFLLQLLRGAGVKG--LSAMPAKRKLGKGE-LVRPLLAITRDDLKKYAEKNN 186

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           + W ED +N + RF R  +R  V
Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEV 209


>gi|152978797|ref|YP_001344426.1| tRNA(Ile)-lysidine synthetase [Actinobacillus succinogenes 130Z]
 gi|226695533|sp|A6VNE4|TILS_ACTSZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|150840520|gb|ABR74491.1| tRNA(Ile)-lysidine synthetase [Actinobacillus succinogenes 130Z]
          Length = 427

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 8/179 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG+DS  LL        +R    ++  AI + H L   A D   +   +C +L +
Sbjct: 17  LIAFSGGADSTALLALFAKSRQNRP--HLQLRAIHIHHGLNVAANDWAAHCRRICEKLEV 74

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              ++       ++G+   AREARYA I  H       ++ TAH   DQ ET  +  +R 
Sbjct: 75  P-LIIERVEINKKSGIEQGAREARYAAIRCHRHA--DEIVATAHHLQDQTETFLLALKRG 131

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              KG+G +   ++ LY +   I RP L   + ++ ++L  +++ W ED SN D+R++R
Sbjct: 132 SGIKGLG-AMQRESRLYGMP--IFRPLLPFGKTELENYLRAQSLDWIEDDSNADNRYDR 187


>gi|15643345|ref|NP_228389.1| hypothetical protein TM0579 [Thermotoga maritima MSB8]
 gi|8928511|sp|Q9WZ48|TILS_THEMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|4981097|gb|AAD35664.1|AE001733_1 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 414

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 26/195 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFG---KIKFSAISVDHCLRETAKDEVRYVSDVC 77
           H+LVAVSGG DSM LL  L      R F    KIK +A  +DH +RE+++ +  +V  +C
Sbjct: 7   HVLVAVSGGIDSMTLLYVL------RKFSPLLKIKITAAHLDHRIRESSRRDREFVERIC 60

Query: 78  SRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            +  I            WK+S     L   ARE RY  +   AK + A+ I  AH  +D 
Sbjct: 61  RQWNIPVETSEVDVPSLWKDS--GKTLEEIAREVRYDFLKRTAKKVGASKIALAHHKNDL 118

Query: 132 LETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LETV  R  R     G+  +S   +  +        RPFL  +R +I  +  + N+ +  
Sbjct: 119 LETVVHRLIRGTGPLGLACISPKREEFI--------RPFLVFKRSEIEEYARKNNVPYVV 170

Query: 191 DPSNTDDRFERVRVR 205
           D +N + ++ R  +R
Sbjct: 171 DETNYNVKYTRNFIR 185


>gi|329731094|gb|EGG67466.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 431

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IHRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|319898074|ref|YP_004136271.1| tRNA(ile)-lysidine synthetase [Haemophilus influenzae F3031]
 gi|317433580|emb|CBY81964.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3031]
          Length = 430

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 141/327 (43%), Gaps = 24/327 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  D+C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I +H +     +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQI--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G       +     + I RP L   R  +  +  +  ++W  D SN D+RF+
Sbjct: 136 RGSGLQGLGAIQQQSELF---GMPIFRPLLGFTRPQLEDYAQKEKLNWITDESNKDNRFD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +    A    I N  
Sbjct: 193 ----RNFLRNKILPKLRERWAYF-DLSVQRSTQHCFEQQQLINDLLSEAFAEHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   VI 
Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337
           R  + L++T+   +L    L  E+ T+
Sbjct: 308 RYQDCLYLTKRFSDLTKCTLKLEQNTL 334


>gi|212212130|ref|YP_002303066.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010540|gb|ACJ17921.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuG_Q212]
          Length = 449

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 9/198 (4%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+ +L   ++  +A SGG DS  L+ A+  +  +  +   +  A+ ++H L   A D   
Sbjct: 20  FITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEHPW---QLRALHINHGLNPKANDWEN 76

Query: 72  YVSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   +C+RL+I   S     + +P   + A AR+ARYA I + A + N TL +TAHT +D
Sbjct: 77  HCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYA-IFQQALSENETL-LTAHTEND 134

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET  ++  R    KG  LS M           + RP L   R+D++ +  + N+ W E
Sbjct: 135 QAETFLLQLLRGAGVKG--LSAMPAKRKLGKGE-LVRPLLAITRDDLKKYAEKNNLRWVE 191

Query: 191 DPSNTDDRFERVRVRRFV 208
           D +N + RF R  +R  V
Sbjct: 192 DDTNLELRFNRNYLRHEV 209


>gi|229083382|ref|ZP_04215732.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
 gi|228699918|gb|EEL52553.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
          Length = 480

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V VSGG DS+ LL  L   L  R   K+K     VDH  R + + +++++V ++C  +
Sbjct: 29  IVVGVSGGPDSLALLYYL---LEKRKEAKLKIVVAHVDHMFRGDESYEDLQFVENLCREI 85

Query: 81  RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +    +    S+   Q G+ A  AARE RYA +    K   A+ +   H  DDQ+ET+ 
Sbjct: 86  GVICETIRINVSQYQQQYGMNAQMAARECRYAFLERIMKKYEASYVALGHHGDDQVETIL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    K  G +G+     +     I RP L   +++I ++  +  I+   DPSN  
Sbjct: 146 MRLVRGSTSK--GYAGIAAKRPFHSGYLI-RPLLAVTKKEINAYCKRIGITPRIDPSNEK 202

Query: 197 DRFERVRVRRFV 208
           + + R R+R+ V
Sbjct: 203 EVYTRNRLRKHV 214


>gi|298693839|gb|ADI97061.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 431

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|145630423|ref|ZP_01786204.1| pyridoxine kinase [Haemophilus influenzae R3021]
 gi|144984158|gb|EDJ91595.1| pyridoxine kinase [Haemophilus influenzae R3021]
          Length = 430

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 149/327 (45%), Gaps = 24/327 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  D+C +L
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLQPLSIRAIHIHHGLSPNADSWAKHCQDLCDQL 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIPLIIERVQVDKT-NGIEAGAREARYQAIKKYLQT--QEMLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ +   I RP L   R  + ++  +  ++W  D SN D+R++
Sbjct: 136 RGSGLQGLG-AMQQRSVLFGMP--ILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYD 192

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
               R F+R+  L  L  +   F DL V+ +        + +   +    A    I N  
Sbjct: 193 ----RNFLRNEILPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQF 247

Query: 261 STLLF--YLLRVSAA-----ICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
               F  Y L    A     +   Q+ +P  R + +++   +F K        +   +I 
Sbjct: 248 KLCQFRKYSLAKQTALLRMWLAENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKIIR 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTV 337
           R  + L++T+   +L    L  E+ T+
Sbjct: 308 RYQDRLYLTKPFSDLTKYCLKLEQNTL 334


>gi|284023518|ref|ZP_06377916.1| hypothetical protein Saura13_02954 [Staphylococcus aureus subsp.
           aureus 132]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|262052536|ref|ZP_06024733.1| hypothetical protein SA930_1957 [Staphylococcus aureus 930918-3]
 gi|282925584|ref|ZP_06333237.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9765]
 gi|259159583|gb|EEW44630.1| hypothetical protein SA930_1957 [Staphylococcus aureus 930918-3]
 gi|282592488|gb|EFB97500.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9765]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|253735244|ref|ZP_04869409.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253726804|gb|EES95533.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDNYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|253730977|ref|ZP_04865142.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253725289|gb|EES94018.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|49482736|ref|YP_039960.1| hypothetical protein SAR0510 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257424621|ref|ZP_05601049.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427287|ref|ZP_05603688.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429924|ref|ZP_05606310.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432626|ref|ZP_05608988.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435530|ref|ZP_05611580.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903095|ref|ZP_06310987.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282904884|ref|ZP_06312744.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282907831|ref|ZP_06315669.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910147|ref|ZP_06317953.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913337|ref|ZP_06321128.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918290|ref|ZP_06326030.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C427]
 gi|282923041|ref|ZP_06330727.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C101]
 gi|283957299|ref|ZP_06374757.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500386|ref|ZP_06666238.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509325|ref|ZP_06668041.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus M809]
 gi|293515913|ref|ZP_06670603.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427043|ref|ZP_06819680.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591580|ref|ZP_06950217.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus MN8]
 gi|61217256|sp|Q6GJG2|TILS_STAAR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49240865|emb|CAG39532.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272648|gb|EEV04768.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275938|gb|EEV07406.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279440|gb|EEV10035.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282491|gb|EEV12624.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285167|gb|EEV15284.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314560|gb|EFB44947.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C101]
 gi|282317856|gb|EFB48225.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C427]
 gi|282322808|gb|EFB53128.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325995|gb|EFB56301.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282328307|gb|EFB58582.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282332001|gb|EFB61510.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596521|gb|EFC01481.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           C160]
 gi|283791223|gb|EFC30033.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290921321|gb|EFD98379.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096346|gb|EFE26606.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467870|gb|EFF10380.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus M809]
 gi|295129046|gb|EFG58675.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575449|gb|EFH94166.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312436401|gb|ADQ75472.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193871|gb|EFU24265.1| hypothetical protein CGSSa00_12597 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRNGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|57651385|ref|YP_185441.1| hypothetical protein SACOL0553 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161906|ref|YP_493196.1| hypothetical protein SAUSA300_0487 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194269|ref|YP_499061.1| hypothetical protein SAOUHSC_00484 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151220683|ref|YP_001331505.1| hypothetical protein NWMN_0471 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508749|ref|YP_001574408.1| hypothetical protein USA300HOU_0503 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142299|ref|ZP_03566792.1| hypothetical protein SauraJ_11802 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452810|ref|ZP_05700805.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5948]
 gi|262049994|ref|ZP_06022853.1| hypothetical protein SAD30_0222 [Staphylococcus aureus D30]
 gi|294850369|ref|ZP_06791102.1| cell cycle protein MesJ [Staphylococcus aureus A9754]
 gi|304380527|ref|ZP_07363203.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|61216391|sp|Q5HIG6|TILS_STAAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|57285571|gb|AAW37665.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127880|gb|ABD22394.1| MesJ/Ycf62 family protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201827|gb|ABD29637.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150373483|dbj|BAF66743.1| isoleusyl-tRNA-2-lysl-cytidine synthase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160367558|gb|ABX28529.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257859496|gb|EEV82349.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5948]
 gi|259161929|gb|EEW46512.1| hypothetical protein SAD30_0222 [Staphylococcus aureus D30]
 gi|269940080|emb|CBI48456.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|294822793|gb|EFG39229.1| cell cycle protein MesJ [Staphylococcus aureus A9754]
 gi|302750400|gb|ADL64577.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340931|gb|EFM06855.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196192|gb|EFU26548.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320139404|gb|EFW31282.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144181|gb|EFW35949.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313228|gb|AEB87641.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329729763|gb|EGG66160.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|161830915|ref|YP_001597351.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 331]
 gi|161762782|gb|ABX78424.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 331]
          Length = 449

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 9/203 (4%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +  F+ +L   ++  +A SGG DS  L+ A+  +  +  +   +  A+ ++H L   A
Sbjct: 15  EKLLKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEHPW---QLRALHINHGLNPKA 71

Query: 67  KDEVRYVSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            D   +   +C+RL+I   S     + +P   + A AR+ARYA I + A + N TL +TA
Sbjct: 72  NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYA-IFQQALSENETL-LTA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT +DQ ET  ++  R    KG  LS M           + RP L   R+D++ +  + N
Sbjct: 130 HTENDQAETFLLQLLRGAGVKG--LSAMPAKRKLGKGE-LVRPLLAITRDDLKKYAEKSN 186

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           + W ED +N + RF R  +R  V
Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEV 209


>gi|313891663|ref|ZP_07825270.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
           345-E]
 gi|313119941|gb|EFR43126.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
           345-E]
          Length = 484

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 16/165 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+AVSGG DS+GLL+A++ +     F        ++DH LR+ + +EV YV+ +C  L 
Sbjct: 27  ILLAVSGGPDSLGLLLAMNELKRSEGFS---IGCCTIDHHLRKESAEEVIYVNKICEELG 83

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   V    V  +  +       AARE RY  + E       T I  AH  DDQ ETV  
Sbjct: 84  IDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHSDDQAETVIH 143

Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           R  R     GM GLSGM     Y +     RPFL   +++I++++
Sbjct: 144 RLIRG---GGMTGLSGMLPKREYFI-----RPFLAVTKKEIQAYI 180


>gi|227357232|ref|ZP_03841589.1| PP-loop superfamily ATPase [Proteus mirabilis ATCC 29906]
 gi|227162495|gb|EEI47484.1| PP-loop superfamily ATPase [Proteus mirabilis ATCC 29906]
          Length = 441

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +    HILV  SGG DS  LL  L   L D+    ++ +AI V H L   A D + + 
Sbjct: 14  RQIGSHTHILVGFSGGVDSTVLLHGL-VCLRDKYQLPLELTAIYVHHGLNSKADDWLTHC 72

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C   +++      + +  + G+   AREARY    ++ +  N  L+   H  DDQ E
Sbjct: 73  EHFCHNWQVSFISERVQVNGKEGGIEQGAREARYQAYRQYLQP-NQVLVTAQHQ-DDQAE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M   + ++   ++ RP L   RE I ++  +  + W ED S
Sbjct: 131 TFLLALKR--GSGPAGLSSMPAKMPFEQG-YLLRPLLNITREQIEAYAHEHGLLWIEDDS 187

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           N DDR++    R F+R   LH + L  +++      V  + A+
Sbjct: 188 NQDDRYD----RNFLR---LHVMPLLTQRWPHFSQAVTRSAAL 223


>gi|322515650|ref|ZP_08068628.1| tRNA(Ile)-lysidine synthetase [Actinobacillus ureae ATCC 25976]
 gi|322118301|gb|EFX90584.1| tRNA(Ile)-lysidine synthetase [Actinobacillus ureae ATCC 25976]
          Length = 419

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 155/366 (42%), Gaps = 28/366 (7%)

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
           A+ + H L   A     +   VC RL+I   +      + + G+ A AR ARY  I E  
Sbjct: 46  AVHIHHGLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARTARYQAIGE-- 102

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             +   +++TAH  DDQ ET  +  +R    KG  LS M   + +  N  I RP L   +
Sbjct: 103 IILPNEVLVTAHHLDDQAETFLLALKRGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSK 159

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             I  + LQ+ ++W ED SN D  +E    R F+R+  L  +  + + F  +  +     
Sbjct: 160 TQIEQYALQQQLTWIEDESNHDSHYE----RNFLRNEVLPIMNQRWQHFSQMVARSAQHC 215

Query: 235 A---MLIPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYR 285
           A   ML+ + LT  ++     S+  LNI     F       L+R+    CG Q  +P   
Sbjct: 216 AEQQMLLEELLTQELQRYADFSEKRLNIKDFPQFSVAKQQQLIRLWLEKCGTQ--MPSTV 273

Query: 286 SMERV---MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP---TLILYPEETTVWD 339
            + +V   M++    K   + +    + R  + L++T  +  L     L+   +  T+ D
Sbjct: 274 RLIQVIQQMIYTNVDKNPQIKLADFWLRRYQHHLYLTGELLELDDFCQLLFAQQSLTLPD 333

Query: 340 GRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMT 398
           G  + Q+L DS+I        +  +P  +     Q  L+      + GKP+     +   
Sbjct: 334 GIGELQHLGDSIIYKKSGKINRLLLPEALVDASLQVKLAHQGKVAQYGKPMREEMKKLYQ 393

Query: 399 KFDLPV 404
           +  +PV
Sbjct: 394 QAQVPV 399


>gi|85707586|ref|ZP_01038652.1| ATPase [Erythrobacter sp. NAP1]
 gi|85689120|gb|EAQ29123.1| ATPase [Erythrobacter sp. NAP1]
          Length = 292

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
            + +S+DH +R  A  EV +V  +C  L +     S K +     L A AREARYA + +
Sbjct: 12  IAVMSIDHGIRPEAAREVAFVETICQSLDV--PFTSAKVTLGAGNLQAKAREARYAALVQ 69

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----TILYDLNLWISRP 168
            A       + TAH  DDQ ET+ MR  R     G GL G+      T L   ++ + RP
Sbjct: 70  WAAQQKIGHVATAHHIDDQAETLLMRLAR-----GSGLPGLAGVREWTHLPGSDVPLIRP 124

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            L  R+ ++ + +    I+   DPSN +  F+RVRVR+ + + D
Sbjct: 125 LLGFRKAELEAVVASAGITPVSDPSNENPAFDRVRVRQHLAEHD 168


>gi|229015466|ref|ZP_04172466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273]
 gi|228745824|gb|EEL95826.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273]
          Length = 480

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 25/240 (10%)

Query: 11  FFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAK 67
           F  R  V   H  I+V VSGG DS+ LL  L   L  R+  +++     VDH  R   + 
Sbjct: 16  FVKRHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMFRGNESH 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIM 123
           +++++V  +C  L +    +    S+   Q G+ A  AARE RYA +    K  +A  + 
Sbjct: 73  EDLQFVQGICKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKYDARYVA 132

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I  +  +
Sbjct: 133 LGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEIVDYCNK 189

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK------MKKFQDLRVKVNNAVAML 237
             +    DPSN  + + R R+R++V        YLK       +KFQ   V++    A L
Sbjct: 190 LKVIPRIDPSNKKEVYTRNRLRKYV------LPYLKEENPQMHEKFQKFSVQMQEDEAYL 243


>gi|283469801|emb|CAQ49012.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 431

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIIYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|253999456|ref|YP_003051519.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. SIP3-4]
 gi|253986135|gb|ACT50992.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. SIP3-4]
          Length = 456

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + ++ F+       H+LVA+SGG DS  LL  L ++ ++     I+ S + V H L   A
Sbjct: 20  QHLQQFITQHHIEGHLLVALSGGLDSCVLLHLLATLPNNPG---IRLSVMHVHHGLSPHA 76

Query: 67  KDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +   +C+     L++ H  V   + +   GL AAAR  RY    E  +  +A  +
Sbjct: 77  DQWAEHCQRLCASHAIPLQVVHVQVPRDSGQ---GLEAAARHLRY----EAMRAAHADYV 129

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + AH  DDQ ETV ++  R     G G+ G+     YD    + RP L   R  +  +  
Sbjct: 130 VLAHHQDDQAETVMLQLLR-----GAGMRGLAAMASYDAQQGLLRPLLDISRAQLAEYAA 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208
           Q  + W ED SN D  ++R   R+ V
Sbjct: 185 QHQLEWVEDESNHDTHYDRNFCRQQV 210


>gi|154684586|ref|YP_001419747.1| YacA [Bacillus amyloliquefaciens FZB42]
 gi|154350437|gb|ABS72516.1| YacA [Bacillus amyloliquefaciens FZB42]
          Length = 472

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 23/232 (9%)

Query: 6   IESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHC 61
           ++SV  F ++    A    I+  VSGG DSM LL  L     ++ FG      A  VDH 
Sbjct: 1   MKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSML-----NKHFGHSSVIIAAHVDHQ 55

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116
            R   +++++++V   C    I    V    S    K +    AAAR+ RY    +    
Sbjct: 56  FRGPESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFEDLMTK 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +  AH  DDQ+ET+ MR  +     G GL+GM     +  + W+ RPFL   +++
Sbjct: 116 HQAKFLALAHHGDDQVETMLMRLAK--GTLGAGLAGMQPVREF-ASGWLIRPFLYAAKDE 172

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKK 222
           I  +  Q  +S+  D SN  D + R R R+ V         D+H ++ K+ +
Sbjct: 173 ILEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSE 224


>gi|15923499|ref|NP_371033.1| hypothetical protein SAV0509 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926186|ref|NP_373719.1| hypothetical protein SA0467 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148266968|ref|YP_001245911.1| hypothetical protein SaurJH9_0531 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393014|ref|YP_001315689.1| hypothetical protein SaurJH1_0544 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156978837|ref|YP_001441096.1| hypothetical protein SAHV_0506 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315222|ref|ZP_04838435.1| hypothetical protein SauraC_03485 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005302|ref|ZP_05143903.2| hypothetical protein SauraM_02505 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794250|ref|ZP_05643229.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9781]
 gi|258407233|ref|ZP_05680378.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9763]
 gi|258420800|ref|ZP_05683736.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9719]
 gi|258429626|ref|ZP_05688300.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9299]
 gi|258446104|ref|ZP_05694265.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6300]
 gi|258448012|ref|ZP_05696142.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6224]
 gi|258453842|ref|ZP_05701815.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5937]
 gi|269202129|ref|YP_003281398.1| hypothetical protein SAAV_0456 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895117|ref|ZP_06303337.1| cell cycle protein MesJ [Staphylococcus aureus A8117]
 gi|295407399|ref|ZP_06817196.1| cell cycle protein MesJ [Staphylococcus aureus A8819]
 gi|296276162|ref|ZP_06858669.1| hypothetical protein SauraMR_07424 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297246479|ref|ZP_06930319.1| cell cycle protein MesJ [Staphylococcus aureus A8796]
 gi|61216721|sp|Q99W94|TILS_STAAM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217307|sp|Q7A7A6|TILS_STAAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|13700399|dbj|BAB41697.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246277|dbj|BAB56671.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740037|gb|ABQ48335.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945466|gb|ABR51402.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720972|dbj|BAF77389.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257788222|gb|EEV26562.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9781]
 gi|257841191|gb|EEV65640.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9763]
 gi|257843192|gb|EEV67605.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9719]
 gi|257849685|gb|EEV73652.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9299]
 gi|257855081|gb|EEV78023.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6300]
 gi|257858702|gb|EEV81575.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6224]
 gi|257864013|gb|EEV86768.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5937]
 gi|262074419|gb|ACY10392.1| hypothetical protein SAAV_0456 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282762535|gb|EFC02675.1| cell cycle protein MesJ [Staphylococcus aureus A8117]
 gi|285816208|gb|ADC36695.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus 04-02981]
 gi|294967756|gb|EFG43788.1| cell cycle protein MesJ [Staphylococcus aureus A8819]
 gi|297176666|gb|EFH35928.1| cell cycle protein MesJ [Staphylococcus aureus A8796]
 gi|312829004|emb|CBX33846.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128637|gb|EFT84640.1| hypothetical protein CGSSa03_01650 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329725061|gb|EGG61556.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 431

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYIRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|302332222|gb|ADL22415.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 431

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|212636261|ref|YP_002312786.1| cell cycle protein MesJ [Shewanella piezotolerans WP3]
 gi|212557745|gb|ACJ30199.1| Cell cycle protein MesJ [Shewanella piezotolerans WP3]
          Length = 452

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 9/192 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I++A SGG DS  L   L   L  +   + ++  + V H L + A D  ++     +
Sbjct: 23  PRKIVLAYSGGVDSEILAQGLS--LFAKQQPQFEYQLVHVHHGLSDNADDWAKHCQAQAA 80

Query: 79  RLRIAHSVVSWKNS-KPQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVY 136
             ++  +V   + +  P+  + A AR  RY AL+   A+   A ++MTAH  DDQLET+ 
Sbjct: 81  LYKLPCTVARVEVTIAPRVSIEAQARSVRYQALL---AQMEAADILMTAHHQDDQLETIL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R    KG  LS M     +D N W+ RP L   + ++ ++ ++  IS  +D SN D
Sbjct: 138 LALKRGLGPKG--LSAMGKVQSFDKNKWLIRPLLDISKSEVEAYAMKHQISHIQDESNFD 195

Query: 197 DRFERVRVRRFV 208
           ++++R  +R+ +
Sbjct: 196 EKYDRNFLRQSI 207


>gi|197286113|ref|YP_002151985.1| tRNA(Ile)-lysidine synthase [Proteus mirabilis HI4320]
 gi|259533731|sp|B4F252|TILS_PROMH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|194683600|emb|CAR44491.1| tRNA(Ile)-lysidine synthase [Proteus mirabilis HI4320]
          Length = 441

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 103/223 (46%), Gaps = 13/223 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +    HILV  SGG DS  LL  L   L D+    ++ +AI V H L   A D + + 
Sbjct: 14  RQIGSHTHILVGFSGGVDSTVLLHGL-VCLRDKYQLPLELTAIYVHHGLNSKADDWLTHC 72

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C   +++      + +  + G+   AREARY    ++ +  N  L+   H  DDQ E
Sbjct: 73  EHFCHNWQVSFISERVQVNGKEGGIEQGAREARYQAYRQYLQP-NQVLVTAQHQ-DDQAE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M   + ++   ++ RP L   RE I ++  +  + W ED S
Sbjct: 131 TFLLALKR--GSGPAGLSSMPAKMPFEQG-YLLRPLLNITREQIEAYAHEHGLLWIEDDS 187

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           N DDR++    R F+R   LH + L  +++      V  + A+
Sbjct: 188 NQDDRYD----RNFLR---LHVMPLLTQRWPHFSQAVTRSAAL 223


>gi|251794097|ref|YP_003008828.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
 gi|247541723|gb|ACS98741.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
          Length = 475

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 90/191 (47%), Gaps = 15/191 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRL 80
           I+ AVSGG DSM LL  L           I   A  V+H  R+ A + E   V     +L
Sbjct: 28  IVAAVSGGPDSMALLHLLWQAARQEQLTVI---AAHVNHGFRKDASRQEAEVVRQYAEKL 84

Query: 81  RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   ++         +TG+ A  AARE RYA + E A    A+ I  AH  DDQ ETV 
Sbjct: 85  GVPFEMIELDMPAYIEETGINAQSAAREKRYAFLHETAVKYGASAIALAHHADDQAETVL 144

Query: 137 MRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           MR  R     G GL+G+        + N+ + RP LR  + DI  +  +R++ +C D SN
Sbjct: 145 MRVIR-----GAGLTGLAGMAPKRKEKNVELIRPLLRMNKSDIVRYCSERDVPYCLDSSN 199

Query: 195 TDDRFERVRVR 205
            +  + R  VR
Sbjct: 200 NERYYFRNVVR 210


>gi|262277487|ref|ZP_06055280.1| cell cycle protein mesj [alpha proteobacterium HIMB114]
 gi|262224590|gb|EEY75049.1| cell cycle protein mesj [alpha proteobacterium HIMB114]
          Length = 333

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 21/202 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           F+   +     ++ VSGG DSM L  L  ++S+  +++F       + +DH +R+ +  E
Sbjct: 25  FLDKNLKEKKFVIGVSGGPDSMALAYLSKVYSIDRNKTF-----ECVIIDHGVRKNSGKE 79

Query: 70  VRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            + V     + +I  ++  + ++NS   +   + AR  RY  I E  K      I+  H 
Sbjct: 80  AKKVKSALLKHKIKSNIFKIKFENS---SNFHSEARVKRYDKIIEFCKRKKVKKILLGHH 136

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            DDQ+E  Y+R  R     G GL+G+     +    N++  RPFL  ++ ++   + ++N
Sbjct: 137 LDDQVENFYIRLSR-----GSGLTGLSPIKKVSKYKNIYFLRPFLNTKKNELVK-IAKKN 190

Query: 186 ISWC-EDPSNTDDRFERVRVRR 206
            S+   DPSN  D++ R RVR+
Sbjct: 191 FSFSVNDPSNFKDKYLRSRVRK 212


>gi|296329569|ref|ZP_06872055.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305672766|ref|YP_003864437.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153312|gb|EFG94175.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411009|gb|ADM36127.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 472

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 97/197 (49%), Gaps = 18/197 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCS 78
           A I+V VSGG DSM LL ALH+ L  RS   I   A  VDH  R    +E +R+V   C 
Sbjct: 18  ATIIVGVSGGPDSMALLHALHT-LCGRSANII---AAHVDHRFRGAESEEDMRFVQAYCK 73

Query: 79  RLRIAH-----SVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             ++A      +V ++   K   GL   AAAR+ RY    +      A  +  AH  DDQ
Sbjct: 74  AEQLACETAQINVTAYAREK---GLNKQAAARDCRYQFFEDIMLKHQADYLALAHHGDDQ 130

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ M+  +     G GL+GM     +     I RPFL   +E+I  +  + ++S+  D
Sbjct: 131 VETMLMKLAK--GALGAGLAGMQPARRFGTGRII-RPFLTITKEEILHYCRENSLSYRTD 187

Query: 192 PSNTDDRFERVRVRRFV 208
            SN  D + R R R+ V
Sbjct: 188 ESNATDDYTRNRFRKTV 204


>gi|183597578|ref|ZP_02959071.1| hypothetical protein PROSTU_00861 [Providencia stuartii ATCC 25827]
 gi|188023075|gb|EDU61115.1| hypothetical protein PROSTU_00861 [Providencia stuartii ATCC 25827]
          Length = 450

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 91/208 (43%), Gaps = 8/208 (3%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L P   +   +  + +   ILV  SGG DS  LL AL+ +        ++  AI + H
Sbjct: 1   MALQPQAIIEQVLNKIGHFRKILVGFSGGVDSTVLLHALYQI-KKYQLPSLEIRAIHIHH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A D   +   +C +  I              G+ AAAREARY   +   +     
Sbjct: 60  GLNVRADDWEAHCQHLCEQWHIPFVCTHVTVDPSNRGIEAAAREARYQ--AYRNELAEGE 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---DLNLWISRPFLRCRREDI 177
           +I TA   DDQ ET  +  +R       GLS M +   +       W+ RP L   R D+
Sbjct: 118 IIATAQHLDDQAETFMLALKR--GSGPAGLSSMPELSPFYAEKGETWLLRPLLAISRGDL 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205
            ++  +  ++W ED SN DDR++R  +R
Sbjct: 176 ENYAREYPLTWVEDDSNQDDRYDRNFLR 203


>gi|295425667|ref|ZP_06818354.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylolyticus DSM 11664]
 gi|295064683|gb|EFG55604.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylolyticus DSM 11664]
          Length = 420

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DSM LL  L+ +    +F  I       DH LR  ++ E   +++ C    
Sbjct: 19  LVIAASGGPDSMALLDMLNELRKSHNFSLI---VAHFDHQLRVDSQKETELLTEYCHSHN 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +  +   W K  +P+TG+ AAAR  RYA +S+      A  ++TAH  DD LE + ++  
Sbjct: 76  LPLAKGVWLKKEQPRTGIEAAARHFRYAFLSQVVAQYQADYLLTAHHGDDLLENILLKFI 135

Query: 141 RDYAEKGM----GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R    + M     +  M  T L        RP L   + ++  +  Q +I++ ED +N  
Sbjct: 136 RSGNPQEMNSLQAVGKMHGTALL-------RPLLSTSKAELLEYDQQHHIAFIEDETNAK 188

Query: 197 DRFERVRVRRFV 208
           D   R R+R  V
Sbjct: 189 DDTLRNRLRHHV 200


>gi|326626600|gb|EGE32943.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 430

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+   G C      L L   RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAGLSAMGECSPFAGTLLL---RPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|300812074|ref|ZP_07092522.1| tRNA(Ile)-lysidine synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496913|gb|EFK31987.1| tRNA(Ile)-lysidine synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 431

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 17/203 (8%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L    + LVA SGG DSM LL      L  R  G  +  A  +DH LR  ++ E 
Sbjct: 11  FAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQKES 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + +   C + ++      W  S  P++GL AAAR+ RY  + E A+ + A  ++TAH  D
Sbjct: 66  QLLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRN 185
           D LE + ++  R    + M         L  ++ W    + RP L   + D+ ++  ++ 
Sbjct: 126 DLLENILLKLVRSGIPREM-------NSLKPVSQWGQVKLVRPLLAVGKADLLAYAKKQG 178

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           + + ED +N      R R+R+ V
Sbjct: 179 LEYVEDETNFTGITARNRLRQEV 201


>gi|323442047|gb|EGA99682.1| hypothetical protein SAO46_2006 [Staphylococcus aureus O46]
          Length = 431

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEESRFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|222099059|ref|YP_002533627.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359]
 gi|221571449|gb|ACM22261.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359]
          Length = 419

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 20/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM LL  L  +       KI+     +DH +RE+++ + ++V D+C +  
Sbjct: 13  VLVAVSGGIDSMTLLYILKKL---SPLLKIEVLGAHLDHRIRESSERDRKFVEDICRQWN 69

Query: 82  I--AHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +    +VV     WK S     L   ARE RY+ + + AK + AT I  AH  +D LETV
Sbjct: 70  VPVETAVVDVPALWKGS--GKTLEEVAREVRYSFLEKVAKKLGATKIALAHHKNDLLETV 127

Query: 136 YMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R  R     G G  G+ C  +  +  +   RPFL  +R +I  +  ++ I +  D +N
Sbjct: 128 LHRLVR-----GTGPLGIACIPVKREKYI---RPFLVFKRSEIEDYAQKQKIPFVVDETN 179

Query: 195 TDDRFERVRVR 205
            D ++ R  +R
Sbjct: 180 YDIKYTRNFIR 190


>gi|15612646|ref|NP_240949.1| cell-cycle protein [Bacillus halodurans C-125]
 gi|61216744|sp|Q9KGH8|TILS_BACHD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|10172695|dbj|BAB03802.1| cell-cycle protein [Bacillus halodurans C-125]
          Length = 462

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 93/217 (42%), Gaps = 28/217 (12%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+ IE  R F    +    ++VAVSGG DSM LL   H + S R    I   A   +H L
Sbjct: 6   LNFIEEHRLFASGGL----VIVAVSGGPDSMALL---HFLFSHREQLGITVMAAHGNHQL 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHA 114
           R+ A +E  +V   C    ++H +        V  +      G+   ARE RY  +   A
Sbjct: 59  RQEADEEETFVHQFC----LSHGILFTSARLPVKERMEMSGEGVQVTARELRYKWLEAEA 114

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           K   A  I T H  DDQ+ET+ M+  R     +  G+ +      +L      I RPFL 
Sbjct: 115 KKHGAAFIATGHHGDDQIETILMKQVRGTFPLSRGGIPVRREVGDVL------IVRPFLG 168

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  I  +  + NI    DPSN    + R R R  +
Sbjct: 169 ITKGQIEHYCKEVNIEPKRDPSNNASSYTRNRFRHTI 205


>gi|167553350|ref|ZP_02347099.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|197262939|ref|ZP_03163013.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197241194|gb|EDY23814.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205322182|gb|EDZ10021.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 430

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+   G C      L L   RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAGLSAMGECSPFAGTLLL---RPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|332653694|ref|ZP_08419438.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Ruminococcaceae
           bacterium D16]
 gi|332516780|gb|EGJ46385.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Ruminococcaceae
           bacterium D16]
          Length = 470

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 34/210 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSD---V 76
           +L AVSGG+DS+ LL  L+ +  + +F      A   DH LR  E+ +D  ++V +   +
Sbjct: 21  VLCAVSGGADSVYLLHRLYCLRRELNF---TLVAAHYDHRLRGAESTQD-AKFVEEFVRL 76

Query: 77  CS------------------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           C                   RL      V+ + ++ + GL   AR+ RYA +   A+ + 
Sbjct: 77  CCPAERLYAPEGPGKELPGVRLITGGGDVAGEAARLRQGLEETARQMRYAFLQTAAQEVG 136

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A LI TAH   D  ETV +     +  +G GL G+        NL   RP L   RE+I 
Sbjct: 137 ANLIATAHNASDNAETVLL-----HLGRGSGLRGLAGMPPKRGNLI--RPLLTTSREEIE 189

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           ++L  R + W ED +N DD + R R+R  V
Sbjct: 190 NYLRYRGLPWREDATNRDDAYARNRLRHQV 219


>gi|218190457|gb|EEC72884.1| hypothetical protein OsI_06667 [Oryza sativa Indica Group]
          Length = 694

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 40/295 (13%)

Query: 10  RFFVRSL----VYPAH-ILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIK---- 52
           R F R +    V+P H + V VSGG DSM L +   +           D   G +     
Sbjct: 55  RAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGVSGFVD 114

Query: 53  -FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYA 108
               + VDH LR  + DE + V D    + +   + +  W N +P+ G +  AARE RY 
Sbjct: 115 GLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAREMRYQ 174

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-----YD--- 160
            + +        +++ AH  DDQ E   +R  R+    G+  +     +      YD   
Sbjct: 175 KLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDN 234

Query: 161 ---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-- 215
                + + RP L   ++D+       N  W EDP+N    + R R+R  +R + +    
Sbjct: 235 FSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGTF 294

Query: 216 ---LYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQ-DILNIDSTLL 264
              L+  +   +  R  ++NA +M++ K LT+  H  ++I + + D  N+D   L
Sbjct: 295 QSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFL 349


>gi|109897591|ref|YP_660846.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas atlantica T6c]
 gi|109699872|gb|ABG39792.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas atlantica T6c]
          Length = 464

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 94/200 (47%), Gaps = 12/200 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           RS   P H++VA S G DS  LL AL   L+       + SA+ + H L + A    ++ 
Sbjct: 16  RSHPSPLHLVVAYSAGIDSHVLLHALWQ-LTQADISSFQLSALYIHHGLSDNADKWQQHC 74

Query: 74  SDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + VCS L +  HS   + +     G+ A AR+ARYA + E A     +++  A   +DQL
Sbjct: 75  ATVCSELEVEFHSAKVFVDVASGNGIEAQARDARYAKLVEVAPP--GSVVALAQHQNDQL 132

Query: 133 ETVYMRSQRDYAEKGMGLSGM------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           ETV ++ +R    KG  LSGM               +   RP L   +  I  +  +  +
Sbjct: 133 ETVLLQLKRGAGPKG--LSGMGRLFSRAKPSTPQEQVHFFRPLLEISQAQIHRYADEHAL 190

Query: 187 SWCEDPSNTDDRFERVRVRR 206
            W ED SN +  FER  +RR
Sbjct: 191 VWQEDESNQNVDFERNFIRR 210


>gi|323438741|gb|EGA96481.1| hypothetical protein SAO11_2434 [Staphylococcus aureus O11]
          Length = 431

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEESRFLEAYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|47570187|ref|ZP_00240841.1| cell cycle protein mesJ [Bacillus cereus G9241]
 gi|47553131|gb|EAL11528.1| cell cycle protein mesJ [Bacillus cereus G9241]
          Length = 476

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH  
Sbjct: 6   VEKVDDFVKQYDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTI 117
           R + + +++++V D+C  L +    +    S+   Q G+ A  AARE RY  +    K  
Sbjct: 63  RGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYVFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRPFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  I    DPSN  + + R R+R++V
Sbjct: 180 VDYCNKLKIIPRIDPSNKKEVYTRNRLRKYV 210


>gi|251809816|ref|ZP_04824289.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251806684|gb|EES59341.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|329733025|gb|EGG69364.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU028]
          Length = 432

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 49/274 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           AHI+VAVS G DSM LL   +S+L+D      K + + V+H LRE + +E  ++ + C +
Sbjct: 12  AHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCHQ 68

Query: 80  LRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             I           +V+  NS  Q      AR+ RY    +    + A +++TAH  DDQ
Sbjct: 69  HHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123

Query: 132 LETVYM-----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           LET+       RS R+     +G++       Y     + RP L  ++ +I ++     I
Sbjct: 124 LETIIYRLFTGRSTRN----SLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQI 175

Query: 187 SWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVK---------V 230
            + ED SN D ++ R  +R+ +         ++ H L LK+K + D+ ++         +
Sbjct: 176 PYYEDMSNQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAETFI 234

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           NN V+    KYLT    S  A ++  +NI S ++
Sbjct: 235 NNEVSK--SKYLTYSF-SRTAFNELNVNIKSVVM 265


>gi|168230546|ref|ZP_02655604.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194471349|ref|ZP_03077333.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194457713|gb|EDX46552.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335048|gb|EDZ21812.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 430

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 81/180 (45%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+   G C      L L   RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAGLSAMGECSPFAGTLLL---RPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|21282193|ref|NP_645281.1| hypothetical protein MW0464 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485373|ref|YP_042594.1| hypothetical protein SAS0466 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297207388|ref|ZP_06923827.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910347|ref|ZP_07127800.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|61217254|sp|Q6GBX9|TILS_STAAS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217380|sp|Q8NXZ4|TILS_STAAW RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21203629|dbj|BAB94329.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49243816|emb|CAG42241.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887951|gb|EFH26845.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300888336|gb|EFK83523.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 431

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C R 
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEVYCERH 69

Query: 80  --------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                   L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------DRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDID----LHALY-LKMKKFQD 225
           D SN D+++ R  +R R +  ID    L A + LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKASHLLKLKQWHD 220


>gi|126653286|ref|ZP_01725397.1| hypothetical protein BB14905_08928 [Bacillus sp. B14905]
 gi|126589960|gb|EAZ84089.1| hypothetical protein BB14905_08928 [Bacillus sp. B14905]
          Length = 468

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 19/197 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSR 79
           H+L+AVSGG DSM LL   H  +  +    I+  A+ VDH LR  A  E R +V   C  
Sbjct: 22  HLLIAVSGGVDSMALL---HYFVQTQEHWNIRVEAVHVDHMLRGEASAEDRAFVQKYCDE 78

Query: 80  LRI-AH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +  H       ++++ +N   Q       R  RY    E     NA  ++TAH  DDQ
Sbjct: 79  NDVYLHATAISIPTILALENGNTQ----LICRRERYRYFKEVLYKTNANKLVTAHHADDQ 134

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LE+V M   ++     M   G+     ++    I RPFL   + +I  +LL++ +++ ED
Sbjct: 135 LESVLMALTKNATMNSM--QGIRPQRYFEGKSLI-RPFLTVTKTEIGEYLLRKGLNYRED 191

Query: 192 PSNTDDRFERVRVRRFV 208
            SN+ D + R R R  V
Sbjct: 192 VSNSKDTYVRNRFRHHV 208


>gi|56418595|ref|YP_145913.1| hypothetical protein GK0060 [Geobacillus kaustophilus HTA426]
 gi|61216398|sp|Q5L3T3|TILS_GEOKA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|261824766|pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna
 gi|261824767|pdb|3A2K|B Chain B, Crystal Structure Of Tils Complexed With Trna
 gi|56378437|dbj|BAD74345.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 464

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 95/211 (45%), Gaps = 14/211 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ VR F+     L   A ++V VSGG DS+ LL   H  LS R   K++  A  VDH  
Sbjct: 2   IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALL---HVFLSLRDEWKLQVIAAHVDHMF 58

Query: 63  R-ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++E+ +V   C   RI    A   V         G   AAR  RY   +E  +  
Sbjct: 59  RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    K  G +G+     +     I RPFL   R +I
Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGGYLI-RPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            ++  Q  +S   DPSN  D + R R R  +
Sbjct: 176 EAYCRQMGLSPRCDPSNEKDDYTRNRFRHHI 206


>gi|315634539|ref|ZP_07889824.1| tRNA(Ile)-lysidine synthetase [Aggregatibacter segnis ATCC 33393]
 gi|315476766|gb|EFU67513.1| tRNA(Ile)-lysidine synthetase [Aggregatibacter segnis ATCC 33393]
          Length = 436

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 20/208 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+  SGG DS  LL AL + L ++     +  AI + H L   A     +   +C +
Sbjct: 18  TQFLIGFSGGLDSTALL-ALFAKLREKQ-PHFQLRAIHIHHGLSANADAWSAHCQQMCRQ 75

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
               L+I H  VS +N     G+ A AR+ARY  I++  + +    + TAH   DQ ET 
Sbjct: 76  FHIPLQIQHVNVSTEN-----GIEAGARQARYEAIAQ--QILPTEWLATAHHQQDQTETF 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++  +R    +G+G +    + +Y +   I RP L   R+ + +F+ Q  +SW ED SN 
Sbjct: 129 FLALKRGSGVQGLG-AMPSKSNVYSVP--IFRPLLNFSRQQLLAFVQQEGLSWIEDESNE 185

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF 223
           D++++    R F+R+I L  L  +   F
Sbjct: 186 DNQYD----RNFLRNIVLPELRQRWAHF 209


>gi|322420025|ref|YP_004199248.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M18]
 gi|320126412|gb|ADW13972.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M18]
          Length = 458

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 27/210 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++VAVSGG+DS+ LL  L  +  +R    +      ++HCLR  E+  DE ++V+D+ +R
Sbjct: 20  VVVAVSGGADSVALLDILTRLDEER----LNLIVAHLNHCLRGAESDADE-QFVADLAAR 74

Query: 80  -----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                L I   V S   +   + L  A R ARYA   E A+   A  I  AH  DDQ ET
Sbjct: 75  YQLPFLAIRVDVASLAAADGLS-LEDAGRRARYAFFHEVARRRGAGSITVAHHLDDQAET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +R  R     G G +G+        NL + RP L+  R ++  +L  R +SW  D +N
Sbjct: 134 VLIRLLR-----GAGGAGLSAMAAVGDNL-VKRPLLQVSRCELEGYLNNRGLSWRTDSTN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
            D    R  +R        H L   ++K+ 
Sbjct: 188 ADTTILRNSIR--------HELIPALRKYN 209


>gi|121602616|ref|YP_988505.1| tRNA(Ile)-lysidine synthetase [Bartonella bacilliformis KC583]
 gi|120614793|gb|ABM45394.1| tRNA(Ile)-lysidine synthetase [Bartonella bacilliformis KC583]
          Length = 660

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
           ++VDH LR  +  E   V+ +C    I H +V W+  KP+T +   AR ARY L+ + A+
Sbjct: 134 VTVDHQLRAESALEAENVAALCRAYHIKHVIVRWEGEKPKTNIAQQARIARYDLLFKEAE 193

Query: 116 TINATLIMTAHTFDDQLETVYMRSQR 141
              ATLIMT HT +DQ+ET +MR QR
Sbjct: 194 KQGATLIMTGHTLNDQVETYHMRRQR 219



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 25/204 (12%)

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           RP L  +R+ +R++L  +  SW +DP+N D +FERVRVR        H+L+   +K  D+
Sbjct: 381 RPLLGVKRKILRAYLSLQGTSWIDDPTNEDRKFERVRVR--------HSLH--QQKLADI 430

Query: 227 RVKVNNAVA------------MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274
             KVN+A              +L       + R  I      L   ++  F +      +
Sbjct: 431 AKKVNHAAVQRRKQAQDIADLILALDICVEYGRCFIRKPAPFLQQHASFPFVVGLFVVLM 490

Query: 275 CGGQISLPGYR--SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP 332
            G    LP  +  ++ R  L L+  ++   ++   VI+     +   R  RN+   IL+P
Sbjct: 491 GGNPYLLPSRKVAALGR-KLSLQHPEKQRFTLAGSVIEYNHKGIVCWREARNIKEEILFP 549

Query: 333 EETTVWDGRYQFQNLSDSLIQIGP 356
            ++ +WDGRYQ  N  D  I++GP
Sbjct: 550 GQSLLWDGRYQITNHDDEAIRVGP 573


>gi|325267936|ref|ZP_08134585.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Kingella denitrificans ATCC 33394]
 gi|324980622|gb|EGC16285.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Kingella denitrificans ATCC 33394]
          Length = 432

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 92/191 (48%), Gaps = 9/191 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG+DS+ LL AL + L D +FG    SA+ V H L   A D  ++  D   RL 
Sbjct: 25  ICVGLSGGADSVVLLHAL-AALRD-TFGLADLSAVHVHHGLNAAADDWQQFCRDYAQRLG 82

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  S    +    + G+ AAAR ARYA+ +E     NA  +  AH  DDQ+ET ++ + R
Sbjct: 83  VGFSAAQVQVDAGKLGIEAAARTARYAVFAEQ----NADFVALAHHRDDQIETFFLAALR 138

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               + +        +     LW  RP L   R +I  +     + +  D SN +  F R
Sbjct: 139 GGGLRALSAMPEQRALTEKTVLW--RPLLAFSRAEIEQYAQDNALMFVHDDSNENPAFLR 196

Query: 202 VRVR-RFVRDI 211
             +R R++ D+
Sbjct: 197 NWLRGRWLPDL 207


>gi|222622571|gb|EEE56703.1| hypothetical protein OsJ_06178 [Oryza sativa Japonica Group]
          Length = 693

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 126/295 (42%), Gaps = 40/295 (13%)

Query: 10  RFFVRSL----VYPAH-ILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIK---- 52
           R F R +    V+P H + V VSGG DSM L +   +           D   G +     
Sbjct: 54  RAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGVSGFVD 113

Query: 53  -FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYA 108
               + VDH LR  + DE + V D    + +   + +  W N +P+ G +  AARE RY 
Sbjct: 114 GLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAREMRYQ 173

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-----YD--- 160
            + +        +++ AH  DDQ E   +R  R+    G+  +     +      YD   
Sbjct: 174 KLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDN 233

Query: 161 ---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-- 215
                + + RP L   ++D+       N  W EDP+N    + R R+R  +R + +    
Sbjct: 234 FSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGTF 293

Query: 216 ---LYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQ-DILNIDSTLL 264
              L+  +   +  R  ++NA +M++ K LT+  H  ++I + + D  N+D   L
Sbjct: 294 QSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFL 348


>gi|312874948|ref|ZP_07734967.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b]
 gi|325913138|ref|ZP_08175508.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B]
 gi|311089693|gb|EFQ48118.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b]
 gi|325477559|gb|EGC80701.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B]
          Length = 430

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + +
Sbjct: 20  IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P+ GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 77  LQLEETKWDTPHPENGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 190

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 191 ETLRNRLRHFV 201


>gi|311280843|ref|YP_003943074.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae SCF1]
 gi|308750038|gb|ADO49790.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae SCF1]
          Length = 436

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 15/193 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           VR L     ILVA SGG DS  LL  L  V   +S   I+  AI V H L   A   VR+
Sbjct: 9   VRRLQPYRQILVAFSGGLDSTVLLHQL--VCWRQSAPDIQLRAIHVHHGLSPNADAWVRH 66

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C++ ++  +V     +    G+ A AR+ARY    +  +     ++ TA   DDQ 
Sbjct: 67  CQQLCAQWQVPLAVARVTLADDGLGIEAHARQARYEAFRDALQP--GEVLATAQHLDDQS 124

Query: 133 ETVYMRSQRDYAEKGM----GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           ET+ +  +R     G+    G++    T L        RP L   RE +  + +Q  + W
Sbjct: 125 ETLLLALKRGSGPAGLSAMPGVAPFAGTRLV-------RPLLEMSRESLMQWAIQHQLRW 177

Query: 189 CEDPSNTDDRFER 201
            ED SN DD +ER
Sbjct: 178 IEDESNQDDAYER 190


>gi|309808776|ref|ZP_07702662.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a]
 gi|308168012|gb|EFO70144.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a]
          Length = 418

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + +
Sbjct: 8   IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 64

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P+ GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 65  LQLEETKWDTPHPENGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 124

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 125 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 178

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 179 ETLRNRLRHFV 189


>gi|82750216|ref|YP_415957.1| hypothetical protein SAB0458 [Staphylococcus aureus RF122]
 gi|82655747|emb|CAI80146.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 431

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 29/221 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78
           HI+VAVS G DSM LL  L   L+D      K + + V+H +R  + +E R++   C   
Sbjct: 13  HIVVAVSTGIDSMCLLYQL---LNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCEGH 69

Query: 79  -------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                  +L ++HS+           +   AR  RY    E    + A +++TAH  DDQ
Sbjct: 70  HIDLHIKKLDLSHSL------NRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+  R     + +  +G   +     Y     I RP L   +++I+ F  + +I + E
Sbjct: 124 LETIMYRIFNGKSTRNKLGFDELSKRKGYQ----IYRPLLAVSKKEIKQFQERYHIPYFE 179

Query: 191 DPSNTDDRFERVRVR-RFVRDIDLH-----ALYLKMKKFQD 225
           D SN D+++ R  +R R +  ID +     +  LK+K++ D
Sbjct: 180 DESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHD 220


>gi|229009573|ref|ZP_04166800.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048]
 gi|229053910|ref|ZP_04195345.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603]
 gi|229131071|ref|ZP_04259984.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196]
 gi|229165052|ref|ZP_04292848.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621]
 gi|228618437|gb|EEK75466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621]
 gi|228652408|gb|EEL08332.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196]
 gi|228721451|gb|EEL72971.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603]
 gi|228751717|gb|EEM01516.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048]
          Length = 480

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117
           R   + +++++V  +C  L +      ++    + Q G+ A  AARE RYA +    K  
Sbjct: 67  RGNESYEDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRSFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK------MKKFQDLRVKVN 231
             +  +  +    DPSN  + + R R+R++V        YLK       +KFQ   V++ 
Sbjct: 184 VDYCNKLKVIPRIDPSNKKEVYTRNRLRKYV------LPYLKEENPQMHEKFQKFSVQMQ 237

Query: 232 NAVAML 237
              A L
Sbjct: 238 EDEAYL 243


>gi|196230473|ref|ZP_03129335.1| tRNA(Ile)-lysidine synthetase [Chthoniobacter flavus Ellin428]
 gi|196225403|gb|EDY19911.1| tRNA(Ile)-lysidine synthetase [Chthoniobacter flavus Ellin428]
          Length = 311

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+ VSGG DS+ LL  LH+       G  +     +DH LR  +  + ++V  +  +L  
Sbjct: 12  LIGVSGGRDSVALLHQLHAA------GFRELIVCHLDHALRAESVADAQFVEKLARKLDY 65

Query: 83  AHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           A  +    V+    + +  L   AREAR +  +  A+  +   +  AH  DDQ+ET+   
Sbjct: 66  AFVLQREDVATLAKQRKKSLETTAREARISFFTHVAREHDCPRLFLAHHADDQVETLLFN 125

Query: 139 SQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             R     G+  +S +    +  + L ISRPFL   RE+I +++L+  +S+ ED SN+D 
Sbjct: 126 LFRGAGAAGLAGMSALSTRTIDGVTLQISRPFLGTWREEIEAYILRHKLSFVEDASNSDR 185

Query: 198 RFERVRVR 205
           +F R R+R
Sbjct: 186 KFTRNRLR 193


>gi|55981511|ref|YP_144808.1| cell cycle protein MesJ [Thermus thermophilus HB8]
 gi|61217197|sp|Q5SI38|TILS_THET8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|55772924|dbj|BAD71365.1| probable cell cycle protein MesJ [Thermus thermophilus HB8]
          Length = 507

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 26/194 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           +++AVSGG DS+ L + +         G+    A  +DH LR  +  +  +V  +  RL 
Sbjct: 19  LVLAVSGGGDSVALALLVKEA------GRQAVVA-HLDHGLRPESPLDQAFVRALAERLG 71

Query: 81  ------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                 R+  + ++    +    L A ARE RYA +   A+ + A  I+TAHT DDQ ET
Sbjct: 72  FPFFTERVEVARIAQARGE---NLEAVAREVRYAFLHRVAREVGARAILTAHTLDDQAET 128

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V ++  +  A           T + +    + RP L   RE++R++L  R  +W EDP+N
Sbjct: 129 VLLQLLQGTARA---------TGIREREGIVVRPLLAHTREELRAYLRARGEAWREDPTN 179

Query: 195 TDDRFERVRVRRFV 208
            D   +R  +R FV
Sbjct: 180 QDPALDRNFLRLFV 193


>gi|19115552|ref|NP_594640.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1723551|sp|Q10441|TILS_SCHPO RecName: Full=Probable tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1262421|emb|CAA94698.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)
           [Schizosaccharomyces pombe]
          Length = 456

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 24/230 (10%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +AVSGG DSM  L++     S   FG   +F A  VDH +R+ + +E        +R+ I
Sbjct: 27  IAVSGGVDSM--LLSWFMKESQIMFGWPNQFIAFVVDHRIRKNSTEEALQTIWNLNRMLI 84

Query: 83  AHSV--VSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            +    ++W N      T L   ARE RY +++    T N   I TAH  +DQ ET++MR
Sbjct: 85  PNVYLNINWGNDDVHSLTNLETIAREHRYQVLTRACITHNIRHICTAHHANDQAETIFMR 144

Query: 139 SQRDYAEKGMGLSGM--------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             R       GL  M         D+I    N+ + RP L   +  I +   Q  I+W E
Sbjct: 145 LLRRKPGTWGGLCAMKPVSQIPESDSICGASNIELLRPLLPYYKNQILNTAKQHGIAWEE 204

Query: 191 DPSNTDDRFE-RVRVRRFVRDIDLH-ALYLKMKK----FQDLRVKVNNAV 234
           DP+N D     R  +RRF   ++ H AL ++  K    FQ L+V ++N V
Sbjct: 205 DPTNADINLTPRNAIRRF---LNQHAALTVEATKLATAFQSLQVNIDNKV 251


>gi|116493275|ref|YP_805010.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC
           25745]
 gi|116103425|gb|ABJ68568.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC
           25745]
          Length = 456

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 11/187 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVS G DS  L+ AL   ++       +     V+H LRE + +E R++   C + +
Sbjct: 21  IVVAVSTGVDSTVLINAL---INSTKIKHQQLIVAHVNHQLREQSIEEERFLHKWCRQHQ 77

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I      W K+  PQ G+ AAARE RY    +     +A +++TAH  D+Q E   M+  
Sbjct: 78  ITFMETDWPKSQHPQHGVEAAAREFRYTFFKQVMHDQHAQVLLTAHNADEQAENFVMQVI 137

Query: 141 RDYAEKGM--GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R     G    L+G+ +   +    W+ RPFL+  ++ +     +  + W ED +N    
Sbjct: 138 RG----GWLNQLNGIPERRTFAQG-WLIRPFLKFTKQFLIETAQENKLRWFEDQTNRTTE 192

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 193 FLRNRVR 199


>gi|332532221|ref|ZP_08408102.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038319|gb|EGI74764.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 434

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 91/185 (49%), Gaps = 11/185 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI- 82
           VA+SGG DS+ LL  + ++  D     I  SAI V H L + A D   +  +VC  L + 
Sbjct: 27  VALSGGVDSVVLLHLMRTLKVDNP--AINVSAIYVHHGLSQYADDWQHFCKNVCIELNVP 84

Query: 83  --AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
             A  VV  + S+  T L A AR+ARY  + E +     ++I+     +DQ+ET  +R +
Sbjct: 85  FEAAKVVIEQQSR--TSLEAQARDARYKALDELSP--QGSIILLGQHLNDQVETFLLRLK 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG+G   M             RP L   R DI +F  Q +IS   D SNTD+ F+
Sbjct: 141 RGSGLKGLG--SMYKERFLQSGRICFRPLLNVARSDIEAFATQFSISHITDDSNTDESFD 198

Query: 201 RVRVR 205
           R  +R
Sbjct: 199 RNFLR 203


>gi|71062418|gb|AAZ21421.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062]
          Length = 297

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 26/192 (13%)

Query: 49  GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108
            KIK     VDH LR  +  E   V  +  ++ I   V+ WK  KP   + + AREARY+
Sbjct: 12  NKIKVKFFLVDHRLRNESTKEATLVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYS 71

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC---DTILY-DLNLW 164
           L+S+  K  N   ++  H  +D +E   +R  R     G GL+G+     ++ Y D +L 
Sbjct: 72  LLSKECKKNNIKYLLLGHHSNDLVENFLIRVVR-----GSGLNGLVSFNKSVKYKDEDLN 126

Query: 165 ISRPFLRCRREDIRSFLLQRNIS------WCEDPSNTDDRFERVRVRRFV-----RDIDL 213
           I RP L   + D+       NIS      + +DPSN ++ ++R R+R  +       +DL
Sbjct: 127 ILRPLLNLEKNDL------INISKIVFKFFIKDPSNINEIYKRTRIRTLLEFLAKEGLDL 180

Query: 214 HALYLKMKKFQD 225
             L L +   +D
Sbjct: 181 KKLKLTIDNLRD 192


>gi|242279442|ref|YP_002991571.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio salexigens DSM 2638]
 gi|242122336|gb|ACS80032.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 340

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV VSGG DS  LLI + ++L+ +S G++ F A  +DH LR+ +  +  +V ++C+ L 
Sbjct: 39  MLVGVSGGIDSTALLI-IATLLARKSGGRV-FCA-HIDHNLRKESAGDRAFVEELCTELG 95

Query: 82  IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +      + V+   ++   GL  A R  RY    +  K  +A  ++ AH   D  E V M
Sbjct: 96  VPVKSLKADVAGYAAERSIGLEEAGRIIRYDFFKQCLKKFDADFLLLAHHIGDLSEDVVM 155

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G   +     YD    + RP L   ++ +  FL      W ED SNT D
Sbjct: 156 RLIR-----GTGWPALAGMDAYDPKRKLLRPLLSTDKDSLEDFLRSIGCPWREDESNTCD 210

Query: 198 RFERVRVRRFV 208
            + R R+R  +
Sbjct: 211 DYTRNRIRNHI 221


>gi|163938071|ref|YP_001642955.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163860268|gb|ABY41327.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 476

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 26/246 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 6   VEKVDDFVKQHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTI 117
           R   + +++++V  +C  L +      ++    + Q G+ A  AARE RYA +    K  
Sbjct: 63  RGNESYEDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    K  G +G+     +  N ++ RP L   +E+I
Sbjct: 123 DARYVALGHHGDDQVETILMRLVRGSTPK--GYAGIAVKRSFH-NGYLIRPLLGVTKEEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK------MKKFQDLRVKVN 231
             +  +  +    DPSN  + + R R+R++V        YLK       +KFQ   V++ 
Sbjct: 180 VDYCNKLKVIPRIDPSNKKEVYTRNRLRKYV------LPYLKEENPQMHEKFQKFSVQMQ 233

Query: 232 NAVAML 237
              A L
Sbjct: 234 EDEAYL 239


>gi|46199478|ref|YP_005145.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
 gi|61217297|sp|Q72IF6|TILS_THET2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|46197104|gb|AAS81518.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
          Length = 507

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 26/194 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           +++AVSGG DS+ L + +         G+    A  +DH LR  +  +  +V  +  RL 
Sbjct: 19  LVLAVSGGGDSVALALLVKEA------GRQAVVA-HLDHGLRPESPLDQAFVRALAERLG 71

Query: 81  ------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                 R+  + ++    +    L A ARE RYA +   A+ + A  I+TAHT DDQ ET
Sbjct: 72  FPFFTERVEVARIAQARGE---NLEAVAREVRYAFLHRVAREVGARAILTAHTLDDQAET 128

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V ++  +  A           T + +    + RP L   RE++R++L  R  +W EDP+N
Sbjct: 129 VLLQLLQGTARA---------TGIREREGIVVRPLLAHTREELRAYLRARGEAWREDPTN 179

Query: 195 TDDRFERVRVRRFV 208
            D   +R  +R FV
Sbjct: 180 QDPALDRNFLRLFV 193


>gi|145636327|ref|ZP_01791996.1| putative cell cycle protein MesJ [Haemophilus influenzae PittHH]
 gi|145270492|gb|EDK10426.1| putative cell cycle protein MesJ [Haemophilus influenzae PittHH]
          Length = 301

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 96/185 (51%), Gaps = 9/185 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+A+SGG DS  +L++L + L  +      +   AI + H L   A    ++  ++C + 
Sbjct: 20  LIALSGGLDST-VLLSLFAKLRQKQPHLQILSLRAIHIHHGLSPNADSWAKHCQNLCDQF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +
Sbjct: 79  QIP-LIIERVQVDKTNGIEAGAREARYQAIKKHLQT--QEVLVTAHHLNDQTETFFLALK 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G +    ++L+ + ++  RP L   R  +  +  +  ++W  D SN D+RF+
Sbjct: 136 RGSGLQGLG-AMQQQSVLFGMPIF--RPLLGFTRPQLEDYAKKEKLNWITDESNEDNRFD 192

Query: 201 RVRVR 205
           R  +R
Sbjct: 193 RNFLR 197


>gi|134094514|ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas arsenicoxydans]
 gi|133738417|emb|CAL61462.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine
           synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS
           [Herminiimonas arsenicoxydans]
          Length = 465

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG DS  LL  L +  +      ++  A  V H L   A   + +    C+ L 
Sbjct: 34  IAIAYSGGLDSAALLYLLRAYATQHG---LELFAFHVHHGLSLNADQWLAHCQQQCAGLG 90

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +A     V   N + ++G+  AAR +RYA + E  +  +  L++TAH  DDQ ETV ++ 
Sbjct: 91  VAFDARRVQIAN-QDKSGVEEAARHSRYAALGEMCRAHDVPLLLTAHHQDDQAETVLLQL 149

Query: 140 QRDYAEKGMGLSGM-----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            R       GLSGM        +L D  L + RP L+  R D+   +    I++ ED SN
Sbjct: 150 LR--GSGVAGLSGMDSVNHAADLLGDATLLMGRPLLQLARADLEKIVTSNAIAFVEDESN 207

Query: 195 TDDRFERVRVRRFV 208
            D R+ R  +R  V
Sbjct: 208 LDPRYARNALRHQV 221


>gi|330504227|ref|YP_004381096.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01]
 gi|328918513|gb|AEB59344.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01]
          Length = 440

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 10/179 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +A SGG DS    + LH + +   + ++   SAI V H L+  A     + + VC+RL I
Sbjct: 23  IAFSGGLDSS---VLLHLLAAWARYEELPALSAIHVHHGLQPAADGWPEHCAQVCTRLGI 79

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +V      P   L  AAR  RYA  +E  +  +  +++ A   DDQ ET+  R  R 
Sbjct: 80  PLDIVR-VQVAPGASLEQAARRVRYAAFAE--RLGSGEVLLGAQHRDDQAETLLFRLLRG 136

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              +G+        +       + RP L C R +++++  +R ++W EDPSN D+RF R
Sbjct: 137 AGVRGLAAMPASRPLGQGS---LVRPLLDCSRAELQAYAQRRGLAWVEDPSNADERFSR 192


>gi|325125152|gb|ADY84482.1| Putative cell cycle protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 431

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 9/202 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           S  F    L    + LVA SGG DSM LL      L  R  G  +  A  +DH LR  ++
Sbjct: 8   SAFFAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQ 62

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            E + +   C + ++      W  S  P++GL AAAR+ RY  + E A+ + A  ++TAH
Sbjct: 63  KESQVLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAH 122

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD LE + ++  R    + M        +     + + RP L   + D+ ++  ++ +
Sbjct: 123 HGDDLLENILLKLVRSGIPREM---NSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGL 179

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
            + ED +N      R R+R+ V
Sbjct: 180 EYVEDETNFTGITARNRLRQEV 201


>gi|73663556|ref|YP_302337.1| hypothetical protein SSP2247 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72496071|dbj|BAE19392.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 431

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 29/234 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78
           HI++AVS G DSM LL  L + L D S+ K+  + + V+H +R  AK+E  ++   C   
Sbjct: 15  HIVLAVSTGVDSMVLLHELITRLKD-SYAKL--TCLHVNHNIRPIAKEEEYFLKQFCKAH 71

Query: 79  --RLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              L + H     V+   NS     +   AR ARY    E    + A +++TAH  DDQ+
Sbjct: 72  HVELYVRHLDLSDVIEKGNS-----IENDARVARYQWFDEMMYELKADILLTAHHQDDQI 126

Query: 133 ETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ET++ R     + +  +G++       Y     I +P L   + +IR + +   + + ED
Sbjct: 127 ETIFYRVMTGRSTRSSLGMAYQTTRASYQ----ICKPLLSTTKNEIRDYQVMHRVPYYED 182

Query: 192 PSNTDDRFERVRVR-RFVRDIDLHA-----LYLKMKKFQDLRVKV--NNAVAML 237
            +NT + + R  +R R + +I+ +A       +K+K++ D +++V  N AVA +
Sbjct: 183 ETNTQNHYVRNDIRNRILPEINENAQLATDQLIKLKEWHDEQLEVINNEAVAFI 236


>gi|104773521|ref|YP_618501.1| hypothetical protein Ldb0367 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513516|ref|YP_812422.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103422602|emb|CAI97205.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116092831|gb|ABJ57984.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 431

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 9/202 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           S  F    L    + LVA SGG DSM LL      L  R  G  +  A  +DH LR  ++
Sbjct: 8   SAFFAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQ 62

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            E + +   C + ++      W  S  P++GL AAAR+ RY  + E A+ + A  ++TAH
Sbjct: 63  KESQVLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAH 122

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD LE + ++  R    + M        +     + + RP L   + D+ ++  ++ +
Sbjct: 123 HGDDLLENILLKLVRSGIPREM---NSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGL 179

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
            + ED +N      R R+R+ V
Sbjct: 180 EYVEDETNFTGITARNRLRQEV 201


>gi|237747645|ref|ZP_04578125.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13]
 gi|229379007|gb|EEO29098.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13]
          Length = 473

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 95/202 (47%), Gaps = 7/202 (3%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           SV F ++  +  A I +A SGG DS  LL   H    +       F    V H L   A 
Sbjct: 30  SVSFSLKESLKNARIAIAYSGGLDSSVLLHLAHRFAIENDCALFAFH---VHHGLNPHAD 86

Query: 68  DEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           D + +  + C RL ++      + + +   G+ A ARE RY  + E  +  +  L++TAH
Sbjct: 87  DWLAHCENECIRLGVSFDSQRVQIDPQSGDGIEAEAREKRYRALGEMCRKHDIPLLLTAH 146

Query: 127 TFDDQLETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             DDQ+ETV    MR        GM  S     +L D  L++ RP L   R+++ S+L++
Sbjct: 147 HEDDQVETVLLQLMRGTGVAGLSGMEASSHSPELLGDETLFLGRPLLSVSRKELASWLVE 206

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
             I+  +D SN D  + R  +R
Sbjct: 207 AGITHIDDDSNDDVAYTRNAIR 228


>gi|114565668|ref|YP_752822.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336603|gb|ABI67451.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 454

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 95/207 (45%), Gaps = 17/207 (8%)

Query: 6   IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  VR ++    L+ P   +L+ VSGG DSM LL  +H + ++   G    + + ++H L
Sbjct: 2   LRKVREYIWEEKLLEPGKKVLLGVSGGPDSMALLHIMHKLTTEMDLG---LAVLHLNHGL 58

Query: 63  RETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           R  A  E  +V + C    I      + +     + +  L  A R+ RY    E  + + 
Sbjct: 59  RPEAAAEEEFVREHCRNWGIDFYSRQADIRALALQEKKTLEEAGRDCRYRYFFEQLEELQ 118

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I TAH  DDQ ETV +   R     G GL G+   +     L   RP L   + +I 
Sbjct: 119 ADYIATAHHQDDQAETVLLHLLR-----GSGLKGLRGIMPRKGQLL--RPLLALSKAEII 171

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
            +L +  I +C D SN D +F R R+R
Sbjct: 172 HYLDENQIPYCLDQSNNDLKFLRNRIR 198


>gi|90020884|ref|YP_526711.1| GntR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89950484|gb|ABD80499.1| transcriptional regulator, GntR family [Saccharophagus degradans
           2-40]
          Length = 429

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 15/230 (6%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + +L   A + VA SGG DS  LL AL SVL       +K  A+ V+H L   A +  R 
Sbjct: 12  ITALSPQACVWVAFSGGLDSTVLLHAL-SVLG------VKCHAVHVNHGLSINADNWQRQ 64

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            S   S+  IA + V    S    G+  AAR ARY  I        + +++T H  DDQ+
Sbjct: 65  CSVFASQREIAFTAVKVIVSAEGRGIEEAARVARYNAIEN--LLAPSDVLLTGHHRDDQI 122

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET ++R  R    +G+G      ++   +   + RP L   R+ +  + LQ+ ++W ED 
Sbjct: 123 ETFFLRLMRGAGLRGLGAMRRTRSLSQAI---LVRPLLNISRQSLHEYALQQGLTWIEDE 179

Query: 193 SNTDDRFERVRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
           SN D  ++R  +R+ FV    L A + +++K  +  V+   A   L+ +Y
Sbjct: 180 SNLDTHYDRNLLRQTFVP--QLKARWPQVEKNVETTVQHLQAAEDLLQEY 227


>gi|257456705|ref|ZP_05621895.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Treponema vincentii ATCC 35580]
 gi|257445898|gb|EEV20951.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Treponema vincentii ATCC 35580]
          Length = 485

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 29/203 (14%)

Query: 21  HILVAVSGGSDSMGLLIA---LHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVS 74
           H L+A SGG+DS  LL+A   L  VLS R       SA++V+H +R   E+A D   +V+
Sbjct: 24  HFLLACSGGADSTALLLAFRQLQPVLSCR------LSAVTVNHNIRSAEESAADSA-FVA 76

Query: 75  DVCSRLR---------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            +CS            I    V+    +   G   AAR  RY L  + A +++A  I+TA
Sbjct: 77  GLCSGFEPAIPCIIEEIPAGEVARYAKERGRGTEDAARTLRYRLFEKTADSVSADFIVTA 136

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H   D  ETV MR       +G G + +  +I+        RP +   R  I  FL Q+ 
Sbjct: 137 HNLSDVYETVLMR-----LFQGGGTASL--SIMPVRRGRYLRPLITVERNSIEEFLRQQG 189

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           I W ED +N  + + R R+R ++
Sbjct: 190 IVWREDATNAGNTYLRNRIRHYL 212


>gi|15602154|ref|NP_245226.1| hypothetical protein PM0289 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|61216731|sp|Q9CNY2|TILS_PASMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|12720522|gb|AAK02373.1| MesJ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 431

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DS  LL+ L + L ++    +   AI + H L   A   V +   +C ++ I
Sbjct: 21  LIGFSGGLDSTALLL-LFAKLREKQ-PHLMLRAIHIHHGLSANADAWVTHCQQICQQVAI 78

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +V         G+ A AREARY  I +H   +   +  TAH   DQ ET ++  +R 
Sbjct: 79  P-LIVEQVKIDQHKGIEAGAREARYQAIRQH--LLPNEMFATAHHQQDQTETFFLALKR- 134

Query: 143 YAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
               G GL+G+      + LY L   I RP L   R+ +  ++ Q    W ED SNTD R
Sbjct: 135 ----GSGLAGLGAMQRKSTLYCLP--ICRPLLTFTRQMLLDYVKQAGCPWVEDESNTDSR 188

Query: 199 FERVRVRRFV 208
           +ER  +R  V
Sbjct: 189 YERNFLRHEV 198


>gi|218677908|ref|ZP_03525805.1| tRNA(Ile)-lysidine synthetase [Rhizobium etli CIAT 894]
          Length = 244

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 94/231 (40%), Gaps = 58/231 (25%)

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
           ++  +H   +  +  D L  D  +L Y L    A+ GGQ   PG   MER++ F   G+ 
Sbjct: 9   RHFRLHGGLLGQVMPDGLRQDRAILDYALGRLTAVFGGQPFAPGRAQMERLLSFATGGEP 68

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI----- 354
           G ++ GRVV D R + L++TR  R +  L+L P E  VWDGR +  N S   ++I     
Sbjct: 69  GRMTAGRVVFDLRRDGLYLTRESRGILPLVLQPGEAGVWDGRLKAVNRSGMTVEIEGPAA 128

Query: 355 --------------------GPQSYRKADVPS-------------------GIPPIIAQR 375
                                P ++ ++  P                    G+P    +R
Sbjct: 129 PSVIPVLVTGIQPPRVGAVNDPTTHDESSAPKDLGALDSCDEHRNEGGEGRGLPKAAWKR 188

Query: 376 ALSSMPS-KEGGKPL-------------LAPFSRFMTKFDLPVAYAFSISF 412
           A++S P    GG PL              APF RF+T+FD   A   S  F
Sbjct: 189 AIASAPVLSAGGVPLSPESEPTIHLTPYFAPFDRFLTRFDFIFANRLSAVF 239


>gi|255546471|ref|XP_002514295.1| raspberry3, putative [Ricinus communis]
 gi|223546751|gb|EEF48249.1| raspberry3, putative [Ricinus communis]
          Length = 679

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 125/286 (43%), Gaps = 37/286 (12%)

Query: 19  PAH-ILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEV--- 70
           P H I + VSGG DS+ L +   A  S    +S G +    AI VDH LR  +K+E    
Sbjct: 59  PQHRIAIGVSGGPDSVALCVLTAAWKSAGVAKSEGFVDGLLAIVVDHGLRPESKEEAQVV 118

Query: 71  -RYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTF 128
            R VSD+  R  IA    SW   +P+ G L   AR+ RY  +          +++ AH  
Sbjct: 119 SRRVSDMGVRCEIA--CCSWYRGRPKQGHLQEEARDMRYQKLHSICLQHQIGVLLIAHHA 176

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMC-------------DTILYDLNLWISRPFLRCRRE 175
           DDQ E   +R  R+     +GL+GM              D  L + ++ ++RP L   +E
Sbjct: 177 DDQAELFILRLSRNSGV--LGLAGMAFTSQIFFSNAQPNDEGLKNESILLARPLLHFSKE 234

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRV 228
           D+          W EDP+N    + R R+R  + ++       +L A+    +K    R 
Sbjct: 235 DMYKICQVAGQDWVEDPTNQSPLYARNRIRMSLGNLSSLTFKSELQAVISACRK---TRA 291

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274
            V+     LI + +T+  +    I  +ILN    +   L++  A +
Sbjct: 292 FVDQTCRNLINQAVTLIHQGYAIIDLEILNPSKVMDICLVKFLALV 337


>gi|227522408|ref|ZP_03952457.1| tRNA(Ile)-lysidine synthetase [Lactobacillus hilgardii ATCC 8290]
 gi|227090466|gb|EEI25778.1| tRNA(Ile)-lysidine synthetase [Lactobacillus hilgardii ATCC 8290]
          Length = 478

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/204 (35%), Positives = 99/204 (48%), Gaps = 20/204 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--R 79
           ++VAVS G DSM LL  L   L  RS   I      VDHCLRE +K E  ++   CS   
Sbjct: 33  VVVAVSTGIDSMTLLYLLEH-LDQRSPQII---VAYVDHCLREQSKRETVFIQQYCSDHH 88

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L++  +V + K   PQ G+ AAARE RY       K   AT+++TAH  DD  ET+ M+ 
Sbjct: 89  LKLVQAVWNRKQH-PQHGIEAAAREFRYRFFRRVLKENQATVLLTAHHGDDLAETMLMKL 147

Query: 140 QR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            R    E  +G++    T        + RP L   +++I  F    +I W ED +N D  
Sbjct: 148 VRGGQVESLIGIAEQRPTSFGS----VVRPLLHFSKKEIHQFASSVHIKWFEDETNLDLT 203

Query: 199 FERVRVRRFVRDIDLHALYLKMKK 222
            +R R R        H +  KMK+
Sbjct: 204 IQRNRFR--------HQIVPKMKQ 219


>gi|325684695|gb|EGD26849.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 431

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 9/199 (4%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L    + LVA SGG DSM LL      L  R  G  +  A  +DH LR  ++ E 
Sbjct: 11  FAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQKES 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + +   C + ++      W  S  P++GL AAAR+ RY  + E A+ + A  ++TAH  D
Sbjct: 66  QLLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LE + ++  R    + M        +     + + RP L   + D+ ++  ++ + + 
Sbjct: 126 DLLENILLKLVRSGIPREM---NSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182

Query: 190 EDPSNTDDRFERVRVRRFV 208
           ED +N      R R+R+ V
Sbjct: 183 EDETNFTGITARNRLRQEV 201


>gi|256848386|ref|ZP_05553829.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714984|gb|EEU29962.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 448

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 13/200 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E  RFF  SL  P  ++VAVS G DSM LL  L S+LS       +     V+H LR  
Sbjct: 13  LERYRFF--SLKQP--LVVAVSTGVDSMTLLHVLGSLLS-----ADQLVVAHVNHHLRAQ 63

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++ E +++   C ++ +   V  W+N  PQ G+  AAR+ RY   ++      A  ++TA
Sbjct: 64  SQQEEQFLRQQCQQMGVRLYVDQWENH-PQHGIENAARQERYRFFAKVMHETKAAYLLTA 122

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +D  ET+ M+  R          G+ +   +  N  + RP LR  ++ +  +     
Sbjct: 123 HHENDLAETMLMKLLR--TGDATATVGIREARPF-ANGQLLRPLLRVTKKSLVEYARVHQ 179

Query: 186 ISWCEDPSNTDDRFERVRVR 205
           + W ED +N +D   R RVR
Sbjct: 180 LKWYEDATNQEDMTLRNRVR 199


>gi|239816062|ref|YP_002944972.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110]
 gi|239802639|gb|ACS19706.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110]
          Length = 325

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 22/197 (11%)

Query: 19  PAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           PAH+ +AV  SGG+DS  LL A  S    +        A  V H L+  A D  R+ + V
Sbjct: 14  PAHLPLAVGFSGGADSTALLAACASAWPGQVL------AFHVHHGLQAAADDFERHCAAV 67

Query: 77  CSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINA----TLIMTAHTFDD 130
           C RL +  +V  V  ++++  +    AAR ARY   +  A+   A      I+  H  DD
Sbjct: 68  CERLGVPLAVHRVDARHAQGDSP-EDAARRARYDAFAAMARMDTALGAIESIVLGHHADD 126

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISW 188
           Q+ET+ +   R     G GL G+     +     L I RP L     DIR++L   ++ W
Sbjct: 127 QVETLLLALSR-----GAGLPGLAAMPAHVRRNGLDIYRPLLAVPGADIRAWLKSVDLPW 181

Query: 189 CEDPSNTDDRFERVRVR 205
            EDP+N D+R+ R R+R
Sbjct: 182 IEDPTNEDERYTRNRIR 198


>gi|89891402|ref|ZP_01202908.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
 gi|89516433|gb|EAS19094.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
          Length = 443

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 25/193 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE-VRYVSDVC 77
           +L+A+SGG DS+ L   L +   D          I++ HC   LR++  D+  ++V ++ 
Sbjct: 21  LLIAISGGLDSVVLTHLLFNAGYD----------ITLAHCNFNLRDSESDQDEQFVRELA 70

Query: 78  SRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R +I   V  ++ S+  +        AARE RY   ++  K  N   I+TAH  DDQ+E
Sbjct: 71  DRFKIDCHVTQFETSQYASDHGVSTQMAARELRYDFFNDLCKDHNYDFILTAHHLDDQIE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T ++   R     G GL G+    +  LN  + RP L   RE I  + +   + W ED S
Sbjct: 131 TFFINLNR-----GAGLKGLQG--IPQLNGNVIRPLLPFSREQIMEYAMNSQVLWREDSS 183

Query: 194 NTDDRFERVRVRR 206
           N  ++++R ++R 
Sbjct: 184 NRSNKYQRNQLRN 196


>gi|312871576|ref|ZP_07731669.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a]
 gi|311092971|gb|EFQ51322.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a]
          Length = 430

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + +
Sbjct: 20  IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 77  LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 190

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 191 ETLRNRLRHFV 201


>gi|319638353|ref|ZP_07993115.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa C102]
 gi|317400102|gb|EFV80761.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa C102]
          Length = 451

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 146/326 (44%), Gaps = 40/326 (12%)

Query: 19  PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P+H +  V +SGG DS   ++ LH +   R F +    A+ V H L   A    ++  D 
Sbjct: 21  PSHTVFEVGLSGGLDS---VVLLHLLDRMREFRRFDLRAVHVHHGLSTNADSWAKFCQDY 77

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C RL +A  V      K   GL AAAR ARY   S+  K I    I+ AH  +DQ+ET  
Sbjct: 78  CQRLNVALRVCRVNVEKHGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILY-DLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           + + R     G GL GM    ++ DLN  + I RP L   R+++  +  Q  + + ED S
Sbjct: 134 LSAVR-----GGGLRGMAAMPVWRDLNEEIQIWRPLLAFSRQELAEYAQQWRLPFVEDES 188

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-----DLRVKVNNAVAMLI---PKYLTVH 245
           N D  +    +R ++R+  L     ++  F+     ++R+   +   +      +Y  + 
Sbjct: 189 NEDSGY----LRNWMRNQALPQWQQRIPNFEQQICANIRLLQEDLQLLDELAESEYQRIS 244

Query: 246 MRSIIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
              I +IS   Q    +   LL+Y LR          SLP Y S+      L++ ++  +
Sbjct: 245 PDGIFSISLWRQCTPLLRRRLLWYFLRKQTE------SLPSYHSIADFARVLETAEQAQL 298

Query: 303 SI--GRVVIDRRANFLWITRAVRNLP 326
           S+  G +V  R   F+W     + LP
Sbjct: 299 SLPNGELVAYRDQLFIWQENEFQRLP 324


>gi|313123084|ref|YP_004033343.1| tRNA(ile)-lysidine synthetase, mesj [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279647|gb|ADQ60366.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 431

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 9/199 (4%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L    + LVA SGG DSM LL      L  R  G  +  A  +DH LR  ++ E 
Sbjct: 11  FAEEGLPLEGNFLVAASGGPDSMALLD-----LMRRLPGGFQLYAAHLDHQLRADSQKES 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + +   C + ++      W  S  P++GL AAAR+ RY  + E A+ + A  ++TAH  D
Sbjct: 66  QLLRAYCHKYQLPLYEGVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LE + ++  R    + M        +     + + RP L   + D+ ++  ++ + + 
Sbjct: 126 DLLENILLKLVRSGIPREM---NSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182

Query: 190 EDPSNTDDRFERVRVRRFV 208
           ED +N      R R+R+ V
Sbjct: 183 EDETNFTGITARNRLRQEV 201


>gi|89900146|ref|YP_522617.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodoferax
           ferrireducens T118]
 gi|89344883|gb|ABD69086.1| tRNA(Ile)-lysidine synthetase-like [Rhodoferax ferrireducens T118]
          Length = 320

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 28/218 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG+DS  LL+A     +++  G++   AI + H ++    D  R+   VC RL 
Sbjct: 18  LAVAFSGGADSTALLLAC----AEKWPGQVH--AIHIHHGVQAAGDDFERHCQAVCVRLG 71

Query: 82  IAHSVVSWKNSKPQTGLMA--AAREARY------ALISEHAKTINATLIMTAHTFDDQLE 133
           +   VV   +++  +G     AAR ARY      AL+ E+A+    ++ +  H  DDQ+E
Sbjct: 72  LP-LVVKRVDARHASGQSPEDAARRARYKAFEAVALV-EYAQVAIKSIALAQHA-DDQVE 128

Query: 134 TVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           T+ +   R     G GL GM           L   RP L     DIR +L+ R ++W ED
Sbjct: 129 TLLLALSR-----GAGLPGMSAMPASWRRAGLTYHRPLLGVAASDIRRWLVGRGVAWIED 183

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           P+N D++F R R+R  +    L AL     +F+D  V+
Sbjct: 184 PTNVDEQFTRNRIRARL----LPALDATFPQFRDTFVR 217


>gi|282850013|ref|ZP_06259395.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745]
 gi|282580202|gb|EFB85603.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745]
          Length = 332

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 14/198 (7%)

Query: 17  VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++P +  ILVA SGG DSM LL  L  + + R     +     VDHC+R  +KDEV ++ 
Sbjct: 19  IFPENCRILVACSGGPDSMALLHLLQDIATHR-HTVYELGVAIVDHCIRLESKDEVLWLR 77

Query: 75  DVCSRLRIAHSVVSW---KNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +    L +      +   K S+ Q        R+ RY  ++  A++     I  AH  DD
Sbjct: 78  NQADVLGLPFYTAVFDVPKLSQAQKLSEETIGRQVRYQWLTGIAQSEGYDYIAVAHHKDD 137

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           Q E++     R     G GL+G+     +  D  + + RP L   +E++  +L +++IS+
Sbjct: 138 QAESILAHLIR-----GTGLNGLTGMAVVSNDYIVPVVRPLLDVTKEELLLYLKEKDISY 192

Query: 189 CEDPSNTDDRFERVRVRR 206
           C D +N D R++R R+R 
Sbjct: 193 CIDSTNEDVRYQRNRIRH 210


>gi|312874299|ref|ZP_07734331.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d]
 gi|311090172|gb|EFQ48584.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d]
          Length = 430

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E + ++  C + +
Sbjct: 20  IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKYCQQYQ 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 77  LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 190

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 191 ETLRNRLRHFV 201


>gi|27469192|ref|NP_765829.1| hypothetical protein SE2274 [Staphylococcus epidermidis ATCC 12228]
 gi|57866063|ref|YP_187744.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A]
 gi|242241594|ref|ZP_04796039.1| cell cycle control ATP-binding protein MesJ [Staphylococcus
           epidermidis W23144]
 gi|293366151|ref|ZP_06612838.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|61217168|sp|Q5HRP5|TILS_STAEQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217351|sp|Q8CQV3|TILS_STAES RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|27316741|gb|AAO05916.1|AE016751_211 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57636721|gb|AAW53509.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A]
 gi|242234975|gb|EES37286.1| cell cycle control ATP-binding protein MesJ [Staphylococcus
           epidermidis W23144]
 gi|291319745|gb|EFE60104.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 432

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 49/274 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           AHI+VAVS G DSM LL   +S+L+D      K + + V+H LRE + +E  ++ + C +
Sbjct: 12  AHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCHQ 68

Query: 80  LRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             I           +V+  NS  Q      AR+ RY    +    + A +++TAH  DDQ
Sbjct: 69  HHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123

Query: 132 LETVYM-----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            ET+       RS R+     +G++       Y     + RP L  ++ +I ++     I
Sbjct: 124 FETIIYRLFTGRSTRN----SLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQI 175

Query: 187 SWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVK---------V 230
            + ED SN D ++ R  +R+ +         ++ H L LK+K + D+ ++         +
Sbjct: 176 PYYEDMSNQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAETFI 234

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           NN V+    KYLT    S  A ++  +NI S ++
Sbjct: 235 NNEVSK--SKYLTYSF-SRTAFNELNVNIKSVVM 265


>gi|309809607|ref|ZP_07703464.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D]
 gi|308170088|gb|EFO72124.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D]
          Length = 430

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + +
Sbjct: 20  IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 77  LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 190

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 191 ETLRNRLRHFV 201


>gi|212637909|ref|YP_002314429.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1]
 gi|212559389|gb|ACJ32444.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1]
          Length = 460

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 19/196 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V VSGG DS+ LL   H + S+R    I+  A  VDH LR + +++++ +V   C + 
Sbjct: 21  VVVGVSGGPDSLALL---HFLWSERERYDIQLVAAHVDHMLRGKQSEEDMHFVKHFCEQ- 76

Query: 81  RIAHSVVSWKN--------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              HS++             +   G+  AAR+ RY    +     +A  +  AH  DDQ+
Sbjct: 77  ---HSIICEATQLDVPAYMERTGKGVQEAARDCRYTFFEQVMYKHHARCVALAHHGDDQI 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV MR  R    +  G +G+     +    +I RPFL   R  I  +  Q  +    DP
Sbjct: 134 ETVLMRLVRGSTTR--GYAGIPVKRPFGSG-YIVRPFLCIDRRQIEQYCQQNGLHARHDP 190

Query: 193 SNTDDRFERVRVRRFV 208
           SN  D + R R R  V
Sbjct: 191 SNEKDDYTRNRFRHAV 206


>gi|300742497|ref|ZP_07072518.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa M567]
 gi|300381682|gb|EFJ78244.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa M567]
          Length = 469

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 11/190 (5%)

Query: 22  ILVAVSGGSDSMGL-LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVA SGG DS+ L  IA H   + RS   ++  A+ VDH L+  + +     ++  + L
Sbjct: 128 VLVACSGGPDSLALACIAAH--FARRS--DVRVGAVVVDHGLQADSAEVAASTAETLTNL 183

Query: 81  RIAHSVVSWKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            + H V++ +   PQ   G   AAR ARY           A  ++  HT DDQ ETV + 
Sbjct: 184 GL-HPVLTERVQVPQGSMGPEMAARTARYGAFERAVHNTGARAVLLGHTLDDQAETVLLG 242

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   L+GM    + +   ++ RPFL  RR D+ +      ++   DP+NTD  
Sbjct: 243 LGRGSGTRS--LAGMPPVRIENGVTYL-RPFLALRRADMLNICEAEGVAPWNDPTNTDQT 299

Query: 199 FERVRVRRFV 208
             R R+R  +
Sbjct: 300 LMRARIRHTI 309


>gi|297831300|ref|XP_002883532.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329372|gb|EFH59791.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 664

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 36/271 (13%)

Query: 19  PAH-ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIK-FSAISVDHCLRETAKD 68
           P H I + VSGG DSM L +         L  V  ++S G I    AI VDH LR+ +KD
Sbjct: 82  PHHRIALGVSGGPDSMALCVLTAKWKTEGLSCV--NKSDGFIDGLVAIVVDHGLRQESKD 139

Query: 69  EVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTA 125
           E   V    S++ I   + S  W + +P+ G L  AARE RY +IS         +++ A
Sbjct: 140 EAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYQMISNVCFRHQIEVLLIA 199

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRR 174
           H  DDQ E   +R  R     G+  +     I           + + ++ + RP L   +
Sbjct: 200 HHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHIKNRSILLVRPLLDLWK 259

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLR 227
           ED+          W EDP+N    F R R+R  + ++       +LHA+  + ++    R
Sbjct: 260 EDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLHSGNFKSELHAVISECRR---TR 316

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             V+     LI + +TV  +    +  + LN
Sbjct: 317 SFVDKFCTDLISQTVTVTDKGYAILDLERLN 347


>gi|167465338|ref|ZP_02330427.1| tRNA(Ile)-lysidine synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 424

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 23/195 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++VAVSGG DS+ LL  L+ +  ++ +   K  A  V+H  R E + +E +YV    S L
Sbjct: 23  VVVAVSGGPDSIALLHMLYRLSDEQGW---KVIAAHVNHQFRKEESAEEAKYVMSFASGL 79

Query: 81  RIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            I   V        +   +  PQ     AARE RY  + + A   NA  I  AH  DDQ 
Sbjct: 80  GIPCEVGVIDVPAYIRETSLNPQV----AAREKRYEFLHKIANVYNADKIALAHHADDQA 135

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ETV MR  R     G GLSG+    +   + N+ + RP LR  + ++ S+  +  + +  
Sbjct: 136 ETVLMRIVR-----GTGLSGLTGIPIKRKEKNVELVRPMLRIYKNEVISYCHEHQLHFFR 190

Query: 191 DPSNTDDRFERVRVR 205
           D SN   ++ R +VR
Sbjct: 191 DSSNDSRKYFRNQVR 205


>gi|308235339|ref|ZP_07666076.1| tRNA(Ile)-lysidine synthase [Gardnerella vaginalis ATCC 14018]
 gi|311114324|ref|YP_003985545.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Gardnerella vaginalis ATCC 14019]
 gi|310945818|gb|ADP38522.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Gardnerella vaginalis ATCC 14019]
          Length = 363

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 9/178 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ L      V + R    I+ +AI V+H ++E +    +  ++  + L 
Sbjct: 45  VLVACSGGRDSLALTALAVKVCASRG---IRCAAIIVNHNMQEGSAKVAQNAANTVASLG 101

Query: 82  IAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  S++   S +    + G  +AAR+ARYA I   AK + A+ ++ AHT DDQ ETV + 
Sbjct: 102 VDKSLIFVESVQVKDGEKGEESAARDARYAAIINAAKDLGASAVLLAHTADDQAETVII- 160

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             RD A  G+        I     +  +RP +  RR +  +      I W +DP+N D
Sbjct: 161 GLRDSA--GLEAVAGMKNITVRSGIRFARPLINLRRLETTNICKDLGIEWWDDPTNGD 216


>gi|259501000|ref|ZP_05743902.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus iners DSM 13335]
 gi|302190551|ref|ZP_07266805.1| tRNA(Ile)-lysidine synthase [Lactobacillus iners AB-1]
 gi|259167694|gb|EEW52189.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus iners DSM 13335]
          Length = 430

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + +
Sbjct: 20  IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 77  LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               + M         L  +  WI+     RP L   +E++  +  +R +++  D +N +
Sbjct: 137 SGNVQEMN-------SLRPIRNWINNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189

Query: 197 DRFERVRVRRFV 208
           +   R R+R FV
Sbjct: 190 NETLRNRLRHFV 201


>gi|241764150|ref|ZP_04762185.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN]
 gi|241366487|gb|EER60987.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN]
          Length = 320

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 20/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG+DS  LL+A     + +  G+++  AI V H L+  A D  R+  D+C  L+
Sbjct: 18  LAVGLSGGADSTALLLAC----ARKWPGQVQ--AIHVHHGLQAAADDFERHCQDLCKCLQ 71

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETV 135
           +  +V  V  +++ P      AAR ARY    A++  H      + I  A   DDQ+ET+
Sbjct: 72  VPLTVQRVDARHA-PGESPEDAARRARYKAFEAVVQAHPAPFAISSIALAQHADDQVETL 130

Query: 136 YMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +   R     G G++G+           ++  RP LR     +R +L  +   W EDP+
Sbjct: 131 LLALSR-----GAGVAGLAAMPARWERGGVFWHRPLLRVAGAHVRDWLRAQGQGWVEDPT 185

Query: 194 NTDDRFERVRVR 205
           N D+RF R R+R
Sbjct: 186 NQDERFTRNRIR 197


>gi|239825646|ref|YP_002948270.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70]
 gi|239805939|gb|ACS23004.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70]
          Length = 462

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 87/192 (45%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V VSGG DS+ LL   H   S R    I   A  VDH  R + +++++ +V   C+  
Sbjct: 21  VIVGVSGGPDSLALL---HFFWSIRQEWNITLIAAHVDHMFRGKQSEEDMNFVKHFCAAR 77

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    V         + + G+  AAR+ RY    E  K   A  +   H  DDQ+ET+ 
Sbjct: 78  GIICEAVQMDVPAFQRESKLGVQEAARQCRYRFFGELMKKYKAHYLALGHHGDDQVETIL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    K  G +G+     +    +I RPFL   R DI ++  Q  I+   D SN  
Sbjct: 138 MRLVRGSTSK--GYAGIPAKRPF-YGGYIIRPFLAISRADIDAYCRQHQITPRHDASNDK 194

Query: 197 DRFERVRVRRFV 208
           D + R R R  V
Sbjct: 195 DDYTRNRFRHHV 206


>gi|325912386|ref|ZP_08174781.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D]
 gi|325475728|gb|EGC78899.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D]
          Length = 418

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E + ++  C + +
Sbjct: 8   IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKYCQQYQ 64

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 65  LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 124

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 125 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 178

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 179 ETLRNRLRHFV 189


>gi|332970936|gb|EGK09910.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Desmospora sp. 8437]
          Length = 477

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 92/192 (47%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LV VSGG DS  LL AL  +     +   K +A+ V+H LR E ++ + +YV   C   
Sbjct: 23  VLVGVSGGPDSTALLHALSRIAPTHGW---KVAAVHVNHGLRGENSRGDEKYVRTCCEHW 79

Query: 81  RIAHSV--VSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +I   V  V  +    Q G    A AR  RYA     A+ + A  +  AH  DDQ+ET+ 
Sbjct: 80  QIPCHVEQVGVRQVLAQKGGNKQAVARSLRYAAFLRVARRVGAECLALAHQADDQVETLL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R       GL+G+  T  +   L I RP L   R D+ ++  +  ++   D SN D
Sbjct: 140 MRLIRGTGP--AGLAGIPATREWR-GLRIVRPLLEVWRSDVEAYCTRYGLTPRLDESNRD 196

Query: 197 DRFERVRVRRFV 208
            R  R R+R  +
Sbjct: 197 PRHTRNRIRHHL 208


>gi|260551924|ref|ZP_05825786.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624]
 gi|260405327|gb|EEW98822.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624]
          Length = 466

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 17/186 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DSM LL  ++ +         K  AI +DH L+E + +  + V+   + L I
Sbjct: 34  LIGCSGGMDSMLLLHLMNQIFPQ------KIRAIYIDHQLQEQSAEWGKLVASQATSLNI 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           ++ +   K       L A AR+ARY    +H +     +++ AH   DQ ET  +R    
Sbjct: 88  SYIIQ--KVQISDGNLEAQARQARYQAYQQHLQ--QNEILLLAHHQQDQAETAILR---- 139

Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               G G+ G+     I Y  N+ I RPFL   RE I S+  Q  + + +DP N D  ++
Sbjct: 140 -LLSGTGVDGLAAMQAIDYRENMTIWRPFLDLTREQIASWAAQLEVKYIDDPMNYDTHYD 198

Query: 201 RVRVRR 206
           RV  R 
Sbjct: 199 RVWCRE 204


>gi|264677341|ref|YP_003277247.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni CNB-2]
 gi|262207853|gb|ACY31951.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni CNB-2]
          Length = 336

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 26/201 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VA SGG+DS  LL+A H+    R  G+++  AI V H L+  A +  R+   +C+
Sbjct: 29  PLPLAVAFSGGADSSALLLACHA----RWPGRVR--AIHVHHGLQAAADEFQRHCEQLCA 82

Query: 79  RLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAK---------TINATLIMT-AH 126
           R  IA  V  +  +N + Q+    AAR+ RYA + + A+          ++A   M  A 
Sbjct: 83  RHGIALKVCAIDARNVQGQSP-EDAARQGRYAALIQAARQPWLDAQGAALDAVRSMALAQ 141

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQR 184
             DDQ+ET+ +   R     G G++G+     +     L   RP L    + +R +L  R
Sbjct: 142 HADDQVETLLLALSR-----GAGVAGLAAMPGHWQRAGLEWFRPLLEVPGQALRDWLRLR 196

Query: 185 NISWCEDPSNTDDRFERVRVR 205
           N+SW EDP+N D  + R R+R
Sbjct: 197 NLSWVEDPTNADPGYTRNRIR 217


>gi|330814391|ref|YP_004358630.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487486|gb|AEA81891.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 346

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 103/207 (49%), Gaps = 12/207 (5%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V+  +     +  +SGG DS+ L  A   + S+++   + +  + VDH +R  +  E + 
Sbjct: 31  VKKNIGSKSFVACISGGPDSLALA-ACSKIYSEKNHTNVFY--LIVDHNIRANSALEAKR 87

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V     ++     +++ K    ++ +   AR+ RY ++S+  K    + ++TAH  DDQ+
Sbjct: 88  VQKNLLKISAKAKILTIKKIISRS-IQKNARDHRYKIMSDFCKKNKISYMLTAHHLDDQI 146

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISWC 189
           E  Y+R  R     G GL G+    + + N   + I RPFL   ++ +     +   ++ 
Sbjct: 147 ENFYIRLSR-----GSGLQGLSSMKIAEKNKEKITIVRPFLSSSKKILIQVAKKIFTTFI 201

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHAL 216
           +DPSNT+DRF R R+R+   +++   L
Sbjct: 202 KDPSNTNDRFLRSRIRKLKSNLEKEGL 228


>gi|322381177|ref|ZP_08055180.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154753|gb|EFX47024.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 479

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 23/195 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++VAVSGG DS+ LL  L+ +  ++ +   K  A  V+H  R E + +E +YV    S L
Sbjct: 23  VVVAVSGGPDSIALLHMLYRLSDEQGW---KVIAAHVNHQFRKEESAEEAKYVMSFASGL 79

Query: 81  RIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            I   V        +   +  PQ     AARE RY  + + A   NA  I  AH  DDQ 
Sbjct: 80  GIPCEVGVIDVPAYIRETSLNPQV----AAREKRYEFLHKIANVYNADKIALAHHADDQA 135

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ETV MR  R     G GLSG+    +   + N+ + RP LR  + ++ S+  +  + +  
Sbjct: 136 ETVLMRIVR-----GTGLSGLTGIPIKRKEKNVELVRPMLRIYKNEVISYCHEHQLHFFR 190

Query: 191 DPSNTDDRFERVRVR 205
           D SN   ++ R +VR
Sbjct: 191 DSSNDSRKYFRNQVR 205


>gi|315653940|ref|ZP_07906856.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus iners ATCC 55195]
 gi|315488636|gb|EFU78282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus iners ATCC 55195]
          Length = 418

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E + ++  C + +
Sbjct: 8   IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKYCQQYQ 64

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 65  LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 124

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 125 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 178

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 179 ETLRNRLRHFV 189


>gi|309803800|ref|ZP_07697886.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d]
 gi|308164209|gb|EFO66470.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d]
          Length = 418

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + +
Sbjct: 8   IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 64

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 65  LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 124

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 125 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 178

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 179 ETLRNRLRHFV 189


>gi|329737901|gb|EGG74129.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU045]
          Length = 432

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 129/274 (47%), Gaps = 49/274 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           AHI+VAVS G DSM LL   +S+L+D      K + + V+H LRE + +E  ++ + C +
Sbjct: 12  AHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCHQ 68

Query: 80  LRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             I           +V+  NS  Q      AR+ RY    +    + A +++TAH  DDQ
Sbjct: 69  HHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIIAQLRADVLLTAHHLDDQ 123

Query: 132 LETVYM-----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            ET+       RS R+     +G++       Y     + RP L  ++ +I ++     I
Sbjct: 124 FETIIYRLFTGRSTRN----SLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQI 175

Query: 187 SWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVK---------V 230
            + ED SN D ++ R  +R+ +         ++ H L LK+K + D+ ++         +
Sbjct: 176 PYYEDMSNQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAETFI 234

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           NN V+    KYLT    S  A ++  +NI S ++
Sbjct: 235 NNEVSK--NKYLTYSF-SRTAFNELNVNIKSVVM 265


>gi|108758860|ref|YP_632533.1| tRNA(Ile)-lysidine synthetase [Myxococcus xanthus DK 1622]
 gi|108462740|gb|ABF87925.1| tRNA(Ile)-lysidine synthetase [Myxococcus xanthus DK 1622]
          Length = 451

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 11/184 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG+DS  LL+   +VL      +++    S+DH LR  A +E R VS V +  R
Sbjct: 29  VLLAVSGGADSTALLMG--TVLVAERL-RLRVEVASLDHGLRPEAAEEARQVS-VLAAAR 84

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
                V      P  G+ A AREARYA +          ++ TAHT  DQ ET+ MR  R
Sbjct: 85  GLPCHVQALRLHPGVGIEARAREARYAALEALRLERGLDVVATAHTATDQAETLLMRLAR 144

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
             A +G          +++    + RP L C RE++ +FL ++ +++  DP NTD    R
Sbjct: 145 GTALRGA-------VGIHEARPGLVRPLLSCTREEVVAFLAEQGVAYVTDPMNTDPVHFR 197

Query: 202 VRVR 205
            RVR
Sbjct: 198 TRVR 201


>gi|309804613|ref|ZP_07698678.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c]
 gi|308166005|gb|EFO68223.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c]
          Length = 430

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E + ++  C + +
Sbjct: 20  IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKYCQQYQ 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 77  LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYIVDYTNQEN 190

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 191 ETLRNRLRHFV 201


>gi|227894505|ref|ZP_04012310.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus ultunensis DSM
           16047]
 gi|227863664|gb|EEJ71085.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus ultunensis DSM
           16047]
          Length = 425

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 90/188 (47%), Gaps = 7/188 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA S G DSM LL  L  +    +F  I   A   DH LR  ++ E   +   C +  
Sbjct: 19  LLVASSAGPDSMALLDMLWGMQKKCNFAVI---AAHFDHQLRVDSEKETEILKKYCRQKE 75

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I      W K+ +PQ G+ AAAR ARYA ++  A   NA  ++TAH  DD LE + ++  
Sbjct: 76  IPFFSTKWLKSQQPQRGVEAAARHARYAFLTMVANEQNADYLLTAHHGDDLLENILLKFI 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + M  S      ++ + L   RP L   ++++  +     IS+  D +N +D   
Sbjct: 136 RSGNPEEMN-SLQAIGKMHGIKLL--RPLLAYSKQELLDYDRTHEISFIIDSTNEEDETM 192

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 193 RNRLRHHV 200


>gi|317047001|ref|YP_004114649.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. At-9b]
 gi|316948618|gb|ADU68093.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. At-9b]
          Length = 433

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 147/349 (42%), Gaps = 25/349 (7%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L+ P A  ++A SGG DS  LL  L  V   +   +++  A+ V H L   A     + 
Sbjct: 8   ALLTPDARCVLAFSGGLDSTVLLHQL--VCWRQQHPQMQLRALHVHHGLSPNADSWAAHC 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +C +  I   V+  +    + G+ AAAR+ARY  + +H +      ++TA   DDQ E
Sbjct: 66  QHLCQQWHIPCEVLRVRVDGREQGIEAAARDARYQALLQHLQP--GEHLLTAQHLDDQCE 123

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +  +R     G  L+ M    +   N  + RP L   R+ + S+  Q  +SW ED S
Sbjct: 124 TLLLALKRGSGPAG--LAAMPSQRILGENTHL-RPLLALSRQQLESWAAQHQLSWIEDES 180

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D R++R  +R+ V  + L A +            +      L+ + L   + + +   
Sbjct: 181 NADCRYDRNFLRQQVLPL-LQARWPHFSAAAARSAALCGEQEQLLDELLAEQL-AQLTDK 238

Query: 254 QDILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306
           Q  LN    L     R  A     I G   ++P   ++ R+   ++  +   + C+  G 
Sbjct: 239 QGRLNFTPLLAMQEARRHALLRRWIAGQGGTMPSRDALLRITREVMHSREDAQPCLHFGA 298

Query: 307 VVIDR-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
             + R R    W       LP+     + +  W  R Q   L +SL ++
Sbjct: 299 FELRRYRQQLYW-------LPSQPSLSQHSLTWHDRSQPLPLPESLGEL 340


>gi|269138115|ref|YP_003294815.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda EIB202]
 gi|267983775|gb|ACY83604.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda EIB202]
 gi|304558160|gb|ADM40824.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda FL6-60]
          Length = 439

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 90/192 (46%), Gaps = 6/192 (3%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           R     L    H+LVA SGG DS  LL AL  + + R    ++   + V H L   A   
Sbjct: 8   RHIADRLAGRQHLLVAFSGGLDSTVLLHALVQLRASR-LPHLRLRVVHVHHGLSHFADQW 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           V +   VC   ++   V+  +    +  + AAAR+ARY  I+E   +     ++TA   D
Sbjct: 67  VDHCESVCYLWQVPLHVLHVQVDTQRNSVEAAARDARYRGIAELIDSHET--LLTAQHLD 124

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET  +  +R       GLS M  ++ +       RP L   RE + ++    ++SW 
Sbjct: 125 DQCETFLLALKR--GSGPTGLSAMAQSMPF-FACEQLRPLLDISREQLTAYAQAHHLSWV 181

Query: 190 EDPSNTDDRFER 201
           ED SNTD RF+R
Sbjct: 182 EDDSNTDARFDR 193


>gi|154499603|ref|ZP_02037641.1| hypothetical protein BACCAP_03259 [Bacteroides capillosus ATCC
           29799]
 gi|150271681|gb|EDM98925.1| hypothetical protein BACCAP_03259 [Bacteroides capillosus ATCC
           29799]
          Length = 458

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 31/208 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEV---RYVSDV 76
           +L AVSGG+DS+ LL   H +   R        A   +HCLR  E+ +DE     +V+  
Sbjct: 21  VLCAVSGGADSVYLL---HRLWLLRDILGFNLIAAHYNHCLRGEESDRDEAFVRDFVAKW 77

Query: 77  CSRLR----------------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           C   R                +    V+ +  +   GL   AR+ RYA + + A+ +   
Sbjct: 78  CGPQRFDGPEGEHTLPAVELVVGRGDVAAEAERQGRGLEETARDMRYAFLRDTAQRLGCD 137

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I TAHT DD  ET+ +     +  +G GL GM        +L   RP L   R ++  +
Sbjct: 138 RIATAHTADDNAETLLL-----HLIRGTGLQGMAGIAPRRGDL--VRPMLTTTRREVEEY 190

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
           L   +I   ED SN+D RF R R+RR V
Sbjct: 191 LELYSIPHVEDSSNSDQRFTRNRIRRQV 218


>gi|220904230|ref|YP_002479542.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868529|gb|ACL48864.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 377

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 14/206 (6%)

Query: 6   IESVRFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +E  RF +  L  P  + +++A+SGG+DS  L  A+ S+L  R    +K   +S++H LR
Sbjct: 19  LEVERFCLHHLALPRGSSLVLALSGGADSTAL-AAILSLLVPRLH--LKLRGLSINHGLR 75

Query: 64  ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
             AK +  +    CS L +  +V    V    ++ + G   A R  RYAL+ E  +T  A
Sbjct: 76  PEAKADAAHAQKTCSILGMPCAVREADVQGLAARCRMGEEEAGRTLRYALLEEERQTSGA 135

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I   H  +D  E + +R  R     G G   +      D    + RP L C    ++ 
Sbjct: 136 HFIALGHHREDLSEDILLRLVR-----GTGWPALGGMPARDDKRRLLRPLLHCAPSALKD 190

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
            L    + WCED SN    + R R+R
Sbjct: 191 LLRHCGLDWCEDASNQSTIYRRNRLR 216


>gi|81429211|ref|YP_396212.1| ATPase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610854|emb|CAI55906.1| Putative ATPase of the PP-loop superfamily, cell cycle protein
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 459

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 87/192 (45%), Gaps = 15/192 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A ++VA S G DSM LL  L  + +     K +     V+H LR  +  E  Y+   C  
Sbjct: 20  AKVIVATSTGVDSMVLLTLLQRLPTAL---KPQLIVAHVNHELRTESVAEEAYLRQFCLE 76

Query: 80  LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM- 137
             ++  V  W     PQTG+ AAARE RY           A  ++TAH  DDQLET+ M 
Sbjct: 77  NDLSLQVAHWPLQQHPQTGIEAAAREFRYQFFEHLMTAEKADYLVTAHHGDDQLETLMMK 136

Query: 138 --RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             RS   +  +G+       D  L        RP L   ++D+R + L  NI+  ED +N
Sbjct: 137 FIRSGELHEMRGIQSQRPFADGTLI-------RPLLPFAKQDLRDYALANNITSFEDQTN 189

Query: 195 TDDRFERVRVRR 206
            +    R RVR 
Sbjct: 190 YETTVLRNRVRH 201


>gi|147676532|ref|YP_001210747.1| ATPase [Pelotomaculum thermopropionicum SI]
 gi|146272629|dbj|BAF58378.1| predicted ATPase [Pelotomaculum thermopropionicum SI]
          Length = 473

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           +LVAVSGG DS+ LL AL+ +  +    +I      ++H  R    + E  +V+D+  R 
Sbjct: 23  VLVAVSGGPDSVALLHALYLLKEEL---EISLHVAHLNHMFRGAESEAEALFVADMARRY 79

Query: 81  RIAHSVVSWK--NSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +  +V +      + Q+GL   AAARE R+   SE A    A+ +  AH  DDQ ET+ 
Sbjct: 80  GLPATVEARDVPAYQKQSGLSAQAAAREVRFRFFSEAAGKAGASRVALAHHADDQAETIL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G++G+          +I RP L  RR +I  +  +  + +C D SN  
Sbjct: 140 INFLR-----GAGITGLKGISPVREGFYI-RPLLTVRRAEIERYCKEMKLPYCRDSSNLK 193

Query: 197 DRFERVRVR 205
             + R RVR
Sbjct: 194 AVYTRNRVR 202


>gi|299533879|ref|ZP_07047246.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni S44]
 gi|298718163|gb|EFI59153.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni S44]
          Length = 336

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 26/201 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VA SGG+DS  LL+A H+    R  G+++  AI V H L+  A +  R+   +C+
Sbjct: 29  PLPLAVAFSGGADSSALLLACHA----RWPGRVR--AIHVHHGLQAAADEFQRHCEQLCA 82

Query: 79  RLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAK---------TINATLIMT-AH 126
           R  IA  V  +  +N + Q+    AAR+ RYA + + A+          ++A   M  A 
Sbjct: 83  RHGIALKVCAIDARNVQGQSP-EDAARQGRYAALIQAARQPWLDAQGAALDAVRSMALAQ 141

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQR 184
             DDQ+ET+ +   R     G G++G+     +     L   RP L    + +R +L  R
Sbjct: 142 HADDQVETLLLALSR-----GAGVAGLAAMPGHWQRAGLEWFRPLLEVPGQVLRDWLRLR 196

Query: 185 NISWCEDPSNTDDRFERVRVR 205
           N+SW EDP+N D  + R R+R
Sbjct: 197 NLSWVEDPTNADPGYTRNRIR 217


>gi|299820646|ref|ZP_07052535.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601]
 gi|299817667|gb|EFI84902.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601]
          Length = 646

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVAVSGG DS+ LL   H ++  R F     +A+ V+H LR  + DE   V D C  L 
Sbjct: 24  ILVAVSGGPDSLALL---HFIV--RFFPLQNIAAVHVNHQLRAESLDEETLVHDSCQTLG 78

Query: 82  I---AHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   + ++ V    ++ + G+  AAR  RY    E  +      ++TAH  DDQ+ET+ M
Sbjct: 79  VDLFSRTIDVKAIAAERKKGIEEAARYVRYQCFEEVMQEAGIDQVVTAHHADDQVETIMM 138

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R       G SG+           I RPFL   + DI ++  +++I +  D +N + 
Sbjct: 139 RLVR--GSFSSGWSGIAPVRKLGAGQVI-RPFLTASKSDILAYCQRQDIQFALDDTNEET 195

Query: 198 RFERVRVRRFV 208
            F R R+R+ V
Sbjct: 196 IFTRNRLRKKV 206


>gi|167759635|ref|ZP_02431762.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704]
 gi|167662761|gb|EDS06891.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704]
          Length = 449

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 88/192 (45%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           ++V VSGG+DS+ LL  L  +   +  G +   A+ V H LRE TA  +  YV  VC  L
Sbjct: 21  VIVGVSGGADSICLLFML--IQLKKEMG-LSVEAVHVHHGLREKTADADAVYVKKVCKEL 77

Query: 81  ----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               R+ +  V       +     A R  R  +  E  +    T I  AH  +D  ET+ 
Sbjct: 78  GIGLRLYYEDVKSFALHNKMSEEEAGRYVRRRIFKEVLQEAGGTKIALAHHQNDNAETLL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R  + KGMG     D +         RP L  +RE+I S+L+ R IS+C D +N +
Sbjct: 138 WNLCRGCSLKGMGGIAPVDGVFI-------RPLLCLKREEIESYLVNRGISYCTDETNLE 190

Query: 197 DRFERVRVRRFV 208
           D   R R+R  V
Sbjct: 191 DGHTRNRIRNHV 202


>gi|312872556|ref|ZP_07732624.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091918|gb|EFQ50294.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1]
          Length = 430

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + +
Sbjct: 20  IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYQ 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 77  LQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++
Sbjct: 137 SGNVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQEN 190

Query: 198 RFERVRVRRFV 208
              R R+R FV
Sbjct: 191 ETLRNRLRHFV 201


>gi|209965092|ref|YP_002298007.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum
           centenum SW]
 gi|209958558|gb|ACI99194.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum
           centenum SW]
          Length = 453

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V VSGG DS+ L++   +    R    +   A++VDH LR  +  E   V    +   
Sbjct: 33  LAVGVSGGRDSLALVLLADAWARARGGSVL---ALTVDHALRPESAAEAAQVGAWMAARG 89

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H+V+ W+  KP  G+  AAR ARYAL+    +   A  ++  H  +DQ ETV +R+ R
Sbjct: 90  IRHAVLRWEGQKPSGGVQQAARAARYALLEARCRAEGALHLLLGHQREDQAETVLLRAAR 149

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GL+GM   +     L + RP L   R  + +        W +DPSN  DRF R
Sbjct: 150 SSGPD--GLAGMA-AVRELAGLRLLRPLLDIPRVRLAATCEALGQPWLDDPSNLSDRFAR 206

Query: 202 VRVRR 206
            R+RR
Sbjct: 207 GRLRR 211


>gi|260893891|ref|YP_003239988.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4]
 gi|260866032|gb|ACX53138.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4]
          Length = 471

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 15/195 (7%)

Query: 16  LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           +++P   ++V VSGG DS+ LL  L+ +  D+   ++      + H LR  A +E   VS
Sbjct: 16  MLFPGDKVVVGVSGGPDSVALLDLLYRLREDK---ELSLYVAHLHHGLRAEADEEAAMVS 72

Query: 75  DVCSRLRIAHSV--VSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++  R  +   +  V  K    Q  L    AARE RY  + E A  + A  I   H  DD
Sbjct: 73  ELARRYGLPFFLDRVDVKKHAQQNKLSIETAARELRYRFLLEVAGEVGANRIALGHQADD 132

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV +   R     G GLSG+    +  +     RP LR RR +I ++   R +S C 
Sbjct: 133 QAETVLLHLLR-----GTGLSGLRG--IPPVRGPFIRPLLRVRRAEIEAYCQWRGLSPCL 185

Query: 191 DPSNTDDRFERVRVR 205
           D SN    + R R+R
Sbjct: 186 DLSNWSLEYTRNRIR 200


>gi|34541632|ref|NP_906111.1| hypothetical protein PG2046 [Porphyromonas gingivalis W83]
 gi|61216584|sp|Q7MTC4|TILS_PORGI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|34397950|gb|AAQ67010.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 454

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 90/193 (46%), Gaps = 26/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE-VRYVSDVC 77
           +LVA+SGG+DS+ LL  L      R  G    +A    HC   LR    DE   +V  +C
Sbjct: 26  VLVALSGGADSVALLCVL------RELGYETVAA----HCNFHLRGVESDEDAAFVERLC 75

Query: 78  SRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             L     RI    V +   +    +  AARE RY    +  K +    +  AH  DD  
Sbjct: 76  RDLDVPLHRIDFDTVRYARER-SISIEMAARELRYEWFGQLRKELAIEYVAVAHHADDNA 134

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +   R     G G+SG+C  + Y  N  I RP L   R++I ++LL + I++  D 
Sbjct: 135 ETMVLNLCR-----GTGISGLC-GMPYKRNDGIVRPLLDATRDEIEAYLLDQKITYRTDS 188

Query: 193 SNTDDRFERVRVR 205
           SN D RF R  VR
Sbjct: 189 SNEDTRFRRNLVR 201


>gi|253576850|ref|ZP_04854175.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843717|gb|EES71740.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 485

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 98/207 (47%), Gaps = 12/207 (5%)

Query: 7   ESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E VR F R   L  P   I+VAVSGG DS  LL  +  +  D++ G ++     + H LR
Sbjct: 11  EQVRRFGRQEQLWLPGDVIVVAVSGGVDSTVLLHIMKEIAGDKALG-LQLICAHLHHGLR 69

Query: 64  -ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            + A  +  +V ++  RL I     ++ V     +    L  AARE RY  + + A+   
Sbjct: 70  GDEADRDAEFVRELAERLGIPFELGYADVRAYMKETGQSLELAAREKRYEYLHQVAERYG 129

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A+ I  AH  DDQ ETV MR  R       GL+GM      + N+ + RP LR  + D+ 
Sbjct: 130 ASSIALAHHADDQAETVLMRLLRGSGPS--GLAGMRPK-RREKNVELIRPLLRIYKTDLL 186

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
               +  +++ ED SN D    R  +R
Sbjct: 187 QACRESGLAYVEDSSNLDKEMTRNSIR 213


>gi|227509310|ref|ZP_03939359.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191240|gb|EEI71307.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 478

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 101/204 (49%), Gaps = 20/204 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--R 79
           ++VAVS G DSM LL  L  +  D+   +I  +   VDHCLRE +K E  ++   CS   
Sbjct: 33  VVVAVSTGIDSMTLLYLLEHL--DQCSPQIIVAY--VDHCLREQSKRETVFIQQYCSDHH 88

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L++  +V + K   PQ G+ AAARE RY       K   AT+++TAH  DD  ET+ M+ 
Sbjct: 89  LKLVQAVWNRKQH-PQHGIEAAAREFRYRFFRRVLKENQATVLLTAHHGDDLAETMLMKL 147

Query: 140 QR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            R    E  +G++    T        + RP L   +++I  F    +I W ED +N D  
Sbjct: 148 VRGGQIESLIGIAEQRPTSFGS----VVRPLLHFSKKEIHQFASSVHIKWFEDETNRDLT 203

Query: 199 FERVRVRRFVRDIDLHALYLKMKK 222
            +R R R        H +  KMK+
Sbjct: 204 IQRNRFR--------HQIVPKMKQ 219


>gi|297616333|ref|YP_003701492.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144170|gb|ADI00927.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM
           12680]
          Length = 463

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 17/207 (8%)

Query: 6   IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  VR F+   +L+ P   ++V VSGG DS+ LL  LH +  +  F      A  ++H L
Sbjct: 8   LRKVRQFIMQHNLISPGELVVVGVSGGPDSVALLHLLHLLGKEEGF---SIHAAHLNHGL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           R  A++E  +V ++   L +  +V    V  +    +  +  A R+ARYA     A+ + 
Sbjct: 65  RPEAEEEEVFVRELAKSLGLGCTVDRAKVREEARAGRRSVEEAGRQARYAFFIRVAEELK 124

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  + TAH   DQ ETV M   R    KG+G       IL        RPFL   R DI 
Sbjct: 125 ADKVATAHHMGDQAETVLMHLLRGSGLKGLGGMSPRRGILI-------RPFLTVTRTDIM 177

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
           S+L +  + +C D SN D  + R R+R
Sbjct: 178 SYLEENRLDYCLDASNYDWDYLRNRIR 204


>gi|325568176|ref|ZP_08144617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158377|gb|EGC70528.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus casseliflavus ATCC 12755]
          Length = 467

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 5/186 (2%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVS G DSM LL     +  +    ++ F    V+H LR  + +E  ++   C    I
Sbjct: 23  LLAVSTGVDSMVLLQVFCQLFPEMQKEQV-FGVAHVNHQLRPASAEEAAFLRQYCQERGI 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                 W+N  P+TG+ A+AR+ RY   ++        +++TAH  DDQ+ET+ M+  R+
Sbjct: 82  PFYERCWENP-PETGIEASARDFRYTFFADVMSREGYDVLLTAHHSDDQVETMLMKMMRE 140

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +  G  GM     +   + + RP L   +  I  +   + I + ED SN +  + R 
Sbjct: 141 GRLQSAG--GMQQQQPFHAGILL-RPLLSVSKTAIYDYAQVQQIPYFEDESNHEPLYLRN 197

Query: 203 RVRRFV 208
           R+R+ V
Sbjct: 198 RLRQQV 203


>gi|116628949|ref|YP_814121.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus gasseri ATCC
           33323]
 gi|238853548|ref|ZP_04643920.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri 202-4]
 gi|311111243|ref|ZP_07712640.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri MV-22]
 gi|122274053|sp|Q046D9|TILS_LACGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|116094531|gb|ABJ59683.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus gasseri ATCC
           33323]
 gi|238833844|gb|EEQ26109.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri 202-4]
 gi|311066397|gb|EFQ46737.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri MV-22]
          Length = 431

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 15/208 (7%)

Query: 7   ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E   FF ++   +     L+A SGG DS+ L   L + L + S   I      +DHCLR+
Sbjct: 3   EFTNFFTKNNIEIKNKKFLLAASGGPDSVALFHMLVNFLPNPSKQLI---VAHLDHCLRK 59

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123
            +  E   +  + +  +I     SW  +  PQTG+ A ARE RYA ++   K      ++
Sbjct: 60  DSYLESELLQKLTTAFKIKLIEKSWPVALHPQTGIEAKAREFRYAFLAHTGKKYQVDYLL 119

Query: 124 TAHTFDDQLETVYMRSQR--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           TAH  DD +E + ++  R  D AE   + + G  D+      + + RP ++  ++ +  +
Sbjct: 120 TAHHGDDLIENILLKFIRSGDVAEMNSLQIVGNLDS------MRLLRPLIKYSKDQLLEY 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  + + ED +N +D   R R+R +V
Sbjct: 174 DKRNGLDYIEDETNFEDDTLRNRLRHYV 201


>gi|284043133|ref|YP_003393473.1| tRNA(Ile)-lysidine synthetase [Conexibacter woesei DSM 14684]
 gi|283947354|gb|ADB50098.1| tRNA(Ile)-lysidine synthetase [Conexibacter woesei DSM 14684]
          Length = 455

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 13/185 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V +SGG DS+ LL      ++ R  G    SA+ V++ LR+ A D+ R+ + +C RL 
Sbjct: 22  VVVLLSGGRDSVCLLD-----VAVRIAGAPAVSAVHVNYGLRDDADDDERHCAQLCERLG 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQ 140
           +A +V           L A AR+ RYA  ++ A T+     I T HT  DQ+ET+  R  
Sbjct: 77  VALAVERPSRPAGSGNLQAWARDVRYAAAAQRALTLGPGAAIATGHTASDQVETILYRLA 136

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
              + +   L GM        +  + RP L   RE+  ++   R + W +D +N + ++ 
Sbjct: 137 SSPSRR--ALLGM-----RPRDGRLVRPLLGLTREETTAYCEARGLPWRDDATNEEGKYA 189

Query: 201 RVRVR 205
           R R+R
Sbjct: 190 RNRLR 194


>gi|303228874|ref|ZP_07315687.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516494|gb|EFL58423.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-134-V-Col7a]
          Length = 320

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 16/199 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           + A ILVA SGG DSM LL  L  V   R   +      ++DH +R  +  E++ V+  C
Sbjct: 14  HEARILVACSGGPDSMVLLHVLQYVKVHRK-ARWTIGVTTMDHSIRRESLSELQMVASYC 72

Query: 78  SRLRIAHSVVSWKNSKP--------QTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           ++    +++  W   K         +  L    R  RY   +E A   +   I+TAH  D
Sbjct: 73  NK----NNLPFWGVKKDIPTIAGERKESLETVGRCERYKWFNELAAREHYDYIVTAHHKD 128

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET+     R    KG  ++GM   I +D  + I RP L   +++I  +   ++I +C
Sbjct: 129 DQGETILAHILRGSGIKG--ITGM-SVISHDYTVPIVRPLLSVTKDEILEYARLQDIEYC 185

Query: 190 EDPSNTDDRFERVRVRRFV 208
            D SN D ++ R R+R  V
Sbjct: 186 VDASNEDVKYNRNRIRHEV 204


>gi|56412509|ref|YP_149584.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|61216419|sp|Q5PD76|TILS_SALPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56126766|gb|AAV76272.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 430

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 136/325 (41%), Gaps = 29/325 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERMTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++ 
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD- 187

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQD 255
              R F+R   L AL L  +++      V  +  +      L+ + L   +   I  ++ 
Sbjct: 188 ---RNFLR---LRALPLLQRRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEG 240

Query: 256 ILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308
            L +   +L   +R +A     +      +P   ++ER+   +   +     C+  G   
Sbjct: 241 TLRLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHE 300

Query: 309 IDR-RANFLWITRAVRNLPTLILYP 332
           I R ++   WI        T +++P
Sbjct: 301 IRRYQSQLWWIKSVAGQHETTVVWP 325


>gi|227512322|ref|ZP_03942371.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577]
 gi|227084497|gb|EEI19809.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577]
          Length = 478

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 98/204 (48%), Gaps = 20/204 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--R 79
           ++VAVS G DSM LL  L   L  RS   I      VDHCLRE +K E  ++   CS   
Sbjct: 33  VVVAVSTGIDSMTLLYLLEH-LDQRSPQII---VAYVDHCLREQSKRETVFIQQYCSDHH 88

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L++  +V + K   PQ G+ AAARE RY       K    T+++TAH  DD  ET+ M+ 
Sbjct: 89  LKLVQAVWNRKQH-PQHGIEAAAREFRYRFFRRVLKENQVTVLLTAHHGDDLAETMLMKL 147

Query: 140 QR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            R    E  +G++    T        + RP L   +++I  F    +I W ED +N D  
Sbjct: 148 VRGGQVESLIGIAEQRPTSFGS----VVRPLLHFSKKEIHQFASSVHIKWFEDETNRDLT 203

Query: 199 FERVRVRRFVRDIDLHALYLKMKK 222
            +R R R        H +  KMK+
Sbjct: 204 IQRNRFR--------HQIVPKMKQ 219


>gi|256829531|ref|YP_003158259.1| tRNA(Ile)-lysidine synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256578707|gb|ACU89843.1| tRNA(Ile)-lysidine synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 334

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 82/188 (43%), Gaps = 12/188 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA S G DS  LL     +   R+   +   A    H LR  +  E+ +  +VCSRL 
Sbjct: 34  LVVAYSAGLDSTALLH---LLHLLRAPLNLTLIAAHAHHGLRPESDRELEHAREVCSRLS 90

Query: 82  IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           IA    H  +    +    GL   AR+ARYA +    +   A  I TAH  DD  E + M
Sbjct: 91  IAFQAAHLDIPSLQAASGRGLEECARQARYAFLESVRQEHQADWITTAHHGDDLAEDIVM 150

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G  G+      D    + RP L   +  +RSFL +    WCED SN   
Sbjct: 151 RLLR-----GTGWPGLGGMPGVDPKRGLLRPLLDWEKNGLRSFLEETGTGWCEDQSNASP 205

Query: 198 RFERVRVR 205
              R RVR
Sbjct: 206 DRTRNRVR 213


>gi|329920372|ref|ZP_08277104.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G]
 gi|328936048|gb|EGG32501.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G]
          Length = 430

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + +
Sbjct: 20  IILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYK 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R
Sbjct: 77  LQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               + M         L  +  WI+     RP L   +E++  +  +R + +  D +N +
Sbjct: 137 SGNVQEMN-------SLRPIRNWINNSLLVRPLLSFSKEELLVYAKKRKLVYIVDYTNQE 189

Query: 197 DRFERVRVRRFV 208
           +   R R+R FV
Sbjct: 190 NETLRNRLRHFV 201


>gi|206578043|ref|YP_002240324.1| tRNA(Ile)-lysidine synthase [Klebsiella pneumoniae 342]
 gi|206567101|gb|ACI08877.1| tRNA(Ile)-lysidine synthase [Klebsiella pneumoniae 342]
          Length = 437

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 175/424 (41%), Gaps = 50/424 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL  L  VL       +   A+ V H L   A D V +   +C + +
Sbjct: 19  LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSAHADDWVAHCRQICQQWQ 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140
           +   V     ++   G+ A AR ARY    +   T+NA  +++TA   DDQ ET+ +  +
Sbjct: 77  VPLVVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEVLVTAQHQDDQCETLLLALK 133

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLS M  +  +  +  + RP L   RE +R + L   +SW ED SN DD ++
Sbjct: 134 RGSGP--TGLSAMAPSSAF-ADSRLLRPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 190

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R   +  L  +   F +   +  +  A    L+ + L   + S++A     L
Sbjct: 191 ----RNFLRLRVIPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASLVA-EDGSL 245

Query: 258 NIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVID 310
           +I         R +A     + G Q  +P     ER+   +   +     C+ +G   + 
Sbjct: 246 SITPLTSMSPPRRAALLRRWLAGHQAPMPAREVPERLWHEVALAREDASPCLRLGDFTVR 305

Query: 311 R-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
           R +    W    V+ LP      E    W    Q   L+D L ++  Q   +   PS   
Sbjct: 306 RFQQRLYW----VKYLPGQT---ESVQHWPDWRQPLRLADGLGELMLQPGGRLRPPSADE 358

Query: 370 PIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAYA---FSIS 411
           P+  + RA   +    + GG+ L        + P+ R  T      + P+A A   F  +
Sbjct: 359 PVTVRFRASGHLHIVGRHGGRKLKKIWQELGVPPWRRDTTPLLFYGETPIAAADDLFVTT 418

Query: 412 FGKV 415
            G+V
Sbjct: 419 EGEV 422


>gi|319794157|ref|YP_004155797.1| tRNA(ile)-lysidine synthetase [Variovorax paradoxus EPS]
 gi|315596620|gb|ADU37686.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus EPS]
          Length = 323

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 88/193 (45%), Gaps = 22/193 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V  SGG+DS  LL A  S    R  G++   A  V H L+  A D  R+  +VC+RL 
Sbjct: 19  LAVGFSGGADSNALLAACAS----RWPGQV--VAFHVHHGLQAAADDFERHCGEVCARLG 72

Query: 82  IA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA----TLIMTAHTFDDQLET 134
           +    H V +     P       AR ARY      A+  +       I   H  DDQ+ET
Sbjct: 73  VPLVVHRVDA--RHAPGDSPEDTARRARYEAFGVMARMDSTRPFIQSIALGHHADDQVET 130

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           + +   R     G GL G+     +     L I RP L     DIR++L  R++ W EDP
Sbjct: 131 LLLALSR-----GAGLPGLAAMPAHAERNGLNIYRPLLTVPAADIRAWLAARDLPWIEDP 185

Query: 193 SNTDDRFERVRVR 205
           SN D R+ R R+R
Sbjct: 186 SNGDARYTRNRIR 198


>gi|317484627|ref|ZP_07943530.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6]
 gi|316924101|gb|EFV45284.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6]
          Length = 355

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 81/196 (41%), Gaps = 16/196 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V P H++VA SGG+DS  L + L      R  G +      +DH LR  + +E       
Sbjct: 46  VSPHHVIVAFSGGADSTALAVIL------RCLG-VSLVLAHLDHRLRPESGEEAESARRF 98

Query: 77  CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             RL +   V    V         GL  A R ARYA       +  A  ++T H  DD  
Sbjct: 99  AERLGVPCMVRRVDVEALARSEGIGLEDAGRRARYAFFDSALLSERAEWVVTGHHLDDLS 158

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E V MR  R     G G  G+      D    + RP L   R ++ +FL    + W ED 
Sbjct: 159 EDVLMRLVR-----GSGWPGLGGMKAVDPARRLLRPLLGTPRAELEAFLRSLGVDWIEDA 213

Query: 193 SNTDDRFERVRVRRFV 208
           SN  D F R R+R  V
Sbjct: 214 SNRSDAFRRNRMRNHV 229


>gi|212710380|ref|ZP_03318508.1| hypothetical protein PROVALCAL_01440 [Providencia alcalifaciens DSM
           30120]
 gi|212686962|gb|EEB46490.1| hypothetical protein PROVALCAL_01440 [Providencia alcalifaciens DSM
           30120]
          Length = 458

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 37/324 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV  SGG DS  LL AL+ +        ++  AI V H L   A     + + +C +  
Sbjct: 22  ILVGFSGGIDSTVLLHALYQI-KISELPSLEIRAIHVHHGLNIQADKWEAHCASLCQKWD 80

Query: 82  IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I     H  V   N     G+ AAAR  RY    E  + +   +I+TA   DDQ ETV +
Sbjct: 81  IPFICRHVTVEGSNK----GIEAAARAERYQAYRE--ELLEDEIIVTAQHLDDQAETVML 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +R       GLS M +++ +     N  + RP L   R  +  +  ++ + W ED SN
Sbjct: 135 ALKR--GSGPTGLSAMPESLAFQAKCGNTVLLRPLLTISRHALEHYRAEQQLPWVEDDSN 192

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRS 248
            DDR++    R F+R   LH +    +++      V+ + ++      L+ + L   +  
Sbjct: 193 QDDRYD----RNFLR---LHIMPRLSERWSHFANAVSRSASLCAEQEALLDELLQDSLDE 245

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAI---CG-GQISLPGYRSMERVMLFLKSGKRGCVSI 304
           II   +  L ID  +   + + +A I    G  Q+++P +  +ER+   +   ++    I
Sbjct: 246 IIDY-RGGLYIDGLVHCSVAKRNALIRRWIGLHQLAMPPFNQLERIWQEVALARQDAEPI 304

Query: 305 ---GRVVIDRRANFLWITRAVRNL 325
              G V I R    LW+ + + +L
Sbjct: 305 CRLGNVEIRRYQGALWVVKRINSL 328


>gi|172087739|ref|YP_205328.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114]
 gi|171902329|gb|AAW86440.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114]
          Length = 456

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 11/197 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V   H++VA+SGG DSM LL        ++   +++  A+ V+H L   A D     +  
Sbjct: 29  VKKPHLIVALSGGVDSMVLLRLAGMYAKEK---QLECMAVHVNHGLSLHANDWEVSCASY 85

Query: 77  CSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           C  L I   +  V+ K S PQ  L   AR+ARY  + ++ ++   +L++T    DDQ+ET
Sbjct: 86  CKELDIPLYIERVNLKVS-PQESLEEVARKARYHALEKYMQS--NSLLLTGQHQDDQVET 142

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            ++  +R       GLS M   I      +  RP L   R+ I  +  Q  ++W ED SN
Sbjct: 143 FFLALKR--GSGPAGLSSMPSIIPLKTG-YKCRPLLFTSRQHITEYAQQHQLTWVEDESN 199

Query: 195 TDDRFERVRVRRFVRDI 211
            D RF+R  +R  +  +
Sbjct: 200 QDTRFDRNFLRHEITPV 216


>gi|160894589|ref|ZP_02075365.1| hypothetical protein CLOL250_02141 [Clostridium sp. L2-50]
 gi|156863900|gb|EDO57331.1| hypothetical protein CLOL250_02141 [Clostridium sp. L2-50]
          Length = 485

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 19/196 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79
           + +V VSGG+DS+ LL  L  +   R   ++K  A+ V+H +R T  D +  YV++ C +
Sbjct: 25  NCIVGVSGGADSICLLTVLAGL---REKIELKLYAVHVNHMIRGTEADADESYVAEYCKK 81

Query: 80  LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQLE 133
           L I     H  V     + +     A R ARY   +  A     T   +  AH  +D  E
Sbjct: 82  LGIPCDCYHIDVPQLAKEQKLTEEEAGRNARYGAFARAADKYGITDYKVAVAHNKNDVAE 141

Query: 134 TVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           TV +   R     G G++GM    +  D    I RP L C R +I ++L Q+ I +C D 
Sbjct: 142 TVLLNMVR-----GTGIAGMAGIPVKRD---RIVRPLLSCTRTEIEAYLEQQGIQYCTDS 193

Query: 193 SNTDDRFERVRVRRFV 208
           +N ++ + R ++R  V
Sbjct: 194 TNLENDYARNKIRNQV 209


>gi|295397830|ref|ZP_06807894.1| tRNA(Ile)-lysidine synthase [Aerococcus viridans ATCC 11563]
 gi|294973927|gb|EFG49690.1| tRNA(Ile)-lysidine synthase [Aerococcus viridans ATCC 11563]
          Length = 484

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DSM LL   H  LS +S   + FS I ++H LR  +  E   V   C    I
Sbjct: 39  LLAVSGGVDSMVLLDLFHR-LSQKSL--VTFSVIHINHQLRPESTAEQDMVIKFCEDRDI 95

Query: 83  AHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              +V+W +  PQ    +  AARE RYA+         +  ++TAH  +DQ ETV MR  
Sbjct: 96  PIQIVAWDHDDPQNPNRSELAAREFRYAVFKRMMVLTKSPFLVTAHHQNDQAETVLMRLV 155

Query: 141 RDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                K +        I  D  L   ++ RP L   + D+  +     I + ED SN D 
Sbjct: 156 HGGRLKSIAGIHPYRPIHLDQGLQTGYVLRPLLSVDKADLYEYATAWQIPFSEDASNLDL 215

Query: 198 RFERVRVRR 206
            + R R R+
Sbjct: 216 AYTRNRFRQ 224


>gi|291457314|ref|ZP_06596704.1| tRNA(Ile)-lysidine synthase [Bifidobacterium breve DSM 20213]
 gi|291381149|gb|EFE88667.1| tRNA(Ile)-lysidine synthase [Bifidobacterium breve DSM 20213]
          Length = 383

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 7/177 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L      V +  S G ++  A+ VDH L+  +       ++ C    
Sbjct: 45  VLVACSGGRDSMALAAVCRIVCA--SLG-LRCGAVIVDHGLQSGSDRVATLTAERCRDCG 101

Query: 82  IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +A   V   +   Q  G+ AAAREARY  +   A+ +NA +++ AHT DDQ ETV +   
Sbjct: 102 LAPVAVRTASVHVQGEGVEAAAREARYGELCGAARELNAAVVLLAHTLDDQAETVLIGLL 161

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R        L+GM   +  D  +++ RP +   R +        NI + +DP+N DD
Sbjct: 162 RSGGVD--ALAGMPQVMHRDGIMFL-RPLIGVSRAETTGICEDLNIHYWDDPTNGDD 215


>gi|288937030|ref|YP_003441089.1| tRNA(Ile)-lysidine synthetase [Klebsiella variicola At-22]
 gi|290512451|ref|ZP_06551817.1| cell cycle protein MesJ [Klebsiella sp. 1_1_55]
 gi|288891739|gb|ADC60057.1| tRNA(Ile)-lysidine synthetase [Klebsiella variicola At-22]
 gi|289774792|gb|EFD82794.1| cell cycle protein MesJ [Klebsiella sp. 1_1_55]
          Length = 437

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 174/423 (41%), Gaps = 48/423 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL  L  VL       +   A+ V H L   A D V +   +C + +
Sbjct: 19  LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSAHADDWVAHCRQICQQWQ 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140
           +   V     ++   G+ A AR ARY    +   T+NA  +++TA   DDQ ET+ +  +
Sbjct: 77  VPLVVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEVLVTAQHQDDQCETLLLALK 133

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLS M  +  +  +  + RP L   RE +R + L   +SW ED SN DD ++
Sbjct: 134 RGSGP--TGLSAMAPSSAF-ADSRLLRPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 190

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R   +  L  +   F +   +  +  A    L+ + L   + S++A    + 
Sbjct: 191 ----RNFLRLRVIPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASLVAEDGSLA 246

Query: 258 NIDSTLLFYLLRVSAA---ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311
               T +    R +     + G Q  +P     ER+   +   +     C+ +G   + R
Sbjct: 247 ITPLTSMSPPRRAALLRRWLAGQQAPMPAREVPERLWHEVALAREDASPCLRLGDFTVRR 306

Query: 312 -RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370
            +    W    V+ LP      E    W    Q   L+D L ++  Q   +   PS   P
Sbjct: 307 FQQRLYW----VKYLPGQT---ESVQHWPDWRQPLRLADGLGELMLQPGGRLRPPSADEP 359

Query: 371 IIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAYA---FSISF 412
           +  + RA   +    + GG+ L        + P+ R  T      + P+A A   F  + 
Sbjct: 360 VTVRFRASGHLHIVGRHGGRKLKKIWQELGVPPWRRDTTPLLFYGETPIAAADDLFVTTE 419

Query: 413 GKV 415
           G+V
Sbjct: 420 GEV 422


>gi|317056314|ref|YP_004104781.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7]
 gi|315448583|gb|ADU22147.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7]
          Length = 444

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 90/193 (46%), Gaps = 25/193 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +L+ +SGG+DS  LL+ LH +  D         A  V+HC+R E A  +  +  ++C  L
Sbjct: 25  LLIGLSGGADSAALLLCLHELGYD-------ICACHVNHCIRGEEADRDQHFCEELCKGL 77

Query: 81  RIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            I  +V      ++  + P +     AR  RY  + E    INA  I TAH  DD LET 
Sbjct: 78  NIDITVKVVDVPAYCRANPVSE-EEGARLLRYKALQE----INADKICTAHNLDDCLETT 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R     G GL G+        N  I RP + C R DI ++L ++  S+  D +N 
Sbjct: 133 LFNLAR-----GSGLKGIASIPPVREN--IIRPLIECSRADIEAYLFEKGQSFVTDSTNL 185

Query: 196 DDRFERVRVRRFV 208
            D + R ++R  V
Sbjct: 186 LDEYSRNKLRHKV 198


>gi|241896603|ref|ZP_04783899.1| possible tRNA(Ile)-lysidine synthetase MesJ [Weissella
           paramesenteroides ATCC 33313]
 gi|241870084|gb|EER73835.1| possible tRNA(Ile)-lysidine synthetase MesJ [Weissella
           paramesenteroides ATCC 33313]
          Length = 324

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 8/192 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LVAVSGG DS+ LL  L +    +   + + SAI ++H LR  A+ E   V  V +  
Sbjct: 25  HVLVAVSGGQDSLRLLRWLTAGDLPKDL-QPQVSAIYINHQLRSDAQQEEALVRKVFAHT 83

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               S     + W +  P   +   ARE RY ++   A+ + A  I+TAH  +DQ+ET+ 
Sbjct: 84  PHLQSATIRKLDW-SEVPTVSVEEKAREKRYGVMFSVAEQVGANSIVTAHHRNDQVETIL 142

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  R    +   L+GM +       L + RPFL   + +++  + +    W +D +N D
Sbjct: 143 YKLTR--GSRLEQLTGMPEKQTLTNGLKLVRPFLSLSKLELKDLIKEPVQEWIDDYTNDD 200

Query: 197 DRFERVRVRRFV 208
            ++ R R+R  V
Sbjct: 201 QQYARNRLRNAV 212


>gi|307297688|ref|ZP_07577494.1| tRNA(Ile)-lysidine synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916948|gb|EFN47330.1| tRNA(Ile)-lysidine synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 463

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 16/186 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRL 80
           ILVAVSGG DSM LL  L+++   +S  KI+  A +++H LRE   ++E R +   C   
Sbjct: 24  ILVAVSGGKDSMALLNVLNNL---KSTLKIELFAANLNHGLREEGPQEEARMIEQFCEDR 80

Query: 81  RI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            I        V  +  +K    + +AARE RY  + +    I A  I   H  DD +E  
Sbjct: 81  FIDFFHEKRDVREYMRTKKGESIESAAREVRYGFLRDVKSMIGADRIALGHNRDDLVENT 140

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +R       KG G+ G+    L   N  + RP L    + I  ++    +++ ED +N 
Sbjct: 141 LLR-----LVKGTGMKGVIG--LRPSNGDLIRPLLFSDMQRIIDYVTINKVTFMEDETNA 193

Query: 196 DDRFER 201
           +D FER
Sbjct: 194 EDGFER 199


>gi|312869847|ref|ZP_07729988.1| tRNA(Ile)-lysidine synthetase [Lactobacillus oris PB013-T2-3]
 gi|311094626|gb|EFQ52929.1| tRNA(Ile)-lysidine synthetase [Lactobacillus oris PB013-T2-3]
          Length = 457

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 15/208 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            F   ++  RFF ++      +++AVS G DSM LL  + S+ +     +   +   V+H
Sbjct: 8   QFKRHLQRGRFFDKN----DRVVIAVSTGVDSMALLSLVTSLPASL---RPAITVAHVNH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119
            LR  +++E  Y+   C + ++A  V  W + + PQTG+ AAAR  RY   +E      +
Sbjct: 61  ELRRQSQEEEAYLRRYCQKHQLALLVKHWPRANHPQTGIEAAARRFRYQFFAEVMAARES 120

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDI 177
            +++TAH  +D  ET+ M+  R     G  LS +   + +       + RP L   +E +
Sbjct: 121 PILLTAHHQNDLAETMLMKLVR-----GGQLSQLVGIEAVRSFAGGRLVRPLLPFSKEQL 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205
           R++ + + + W ED +N D    R R R
Sbjct: 176 RAYAVAKGVRWYEDATNQDLTISRNRYR 203


>gi|61216758|sp|Q9ZGE2|TILS_HELMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3820563|gb|AAC84036.1| cell cycle protein MesJ [Heliobacillus mobilis]
          Length = 470

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 18/190 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCSRL 80
           I++A+SGG+DS+ LL+    V     FG I+ +A   +H +R    DE   +V+++ +RL
Sbjct: 24  IVIALSGGADSVCLLLLFKKV--SPQFG-IELAAAHYNHGMRGKESDEDAAFVAELTNRL 80

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           ++      + + W   +P T  M AAR  RY  +S  A+   A  I  AH  DD  ETV 
Sbjct: 81  QVPLFLETAPLKWWQQEPGTK-MEAARRLRYDFLSRSAEQAGARWIALAHHADDMAETVL 139

Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
               R    KG+ G+       +        RP L  RR+++  FL      W  D SN 
Sbjct: 140 FHMLRGSGIKGLSGIPAKRGPFV--------RPLLPFRRKELEEFLKAEGQHWRHDSSND 191

Query: 196 DDRFERVRVR 205
            D + R R+R
Sbjct: 192 SDVYTRNRIR 201


>gi|33519753|ref|NP_878585.1| cell cycle protein MesJ [Candidatus Blochmannia floridanus]
 gi|61216604|sp|Q7VRC9|TILS_BLOFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33504098|emb|CAD83359.1| cell cycle protein MesJ [Candidatus Blochmannia floridanus]
          Length = 531

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 18/207 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIK-----FSAISVDHCLRE 64
           +R +V   ++L+A SGG DS  LL  L  +     F   G  K       A+ V H L  
Sbjct: 18  IRCIVKYRNLLLAYSGGMDSTVLLDILTKLKKYFDFQVKGTSKILPFFLRAVYVHHGLNN 77

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATL 121
            A     +    C    +   ++   +S   K +  + A AR+ RY  +    K     +
Sbjct: 78  KADYWADHCLQQCKMRNVPFHIIYINHSDLSKIKCNIEAMARDFRYKALFNALKP--EEV 135

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIR 178
           ++TAH  +DQ+ETV +  +R       GLSGM   ILY  N +   + RP L+C    ++
Sbjct: 136 LLTAHHMNDQVETVLLALKR--GSGPAGLSGMTQDILYQHNEYQHRLLRPLLKCSHIQLQ 193

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
            +  ++ ++W ED +NTD RF+R  +R
Sbjct: 194 EYAYRKKLTWVEDDTNTDVRFDRNFLR 220


>gi|332638692|ref|ZP_08417555.1| tRNA(Ile)-lysidine synthase [Weissella cibaria KACC 11862]
          Length = 325

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 12/194 (6%)

Query: 21  HILVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV-C 77
           H+LVAVSGG DS+ LL  +   ++ +D    +   SA  V+H LR+ A  E   V     
Sbjct: 25  HVLVAVSGGQDSLHLLRWLTEGTLPADV---QPTVSAGYVNHQLRDDAAAEEALVRRTFA 81

Query: 78  SRLRIAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +   +A+ ++   +W+ + P   +   ARE RY  + + A+ + A +I+TAH   DQ+ET
Sbjct: 82  ATPHLAYGLIETLTWE-AVPTVAVEEQAREKRYEALIKMAREVGANIIVTAHHQGDQVET 140

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +  +  R    +   L GM        ++ ++RP L   + D+   ++Q    W ED +N
Sbjct: 141 ILYKLTR--GSRLTQLVGMAPRQQLRGDIDLARPLLNLTKADLADLVIQPLTEWVEDYTN 198

Query: 195 TDDRFERVRVRRFV 208
            D+ F R R+R+ V
Sbjct: 199 ADETFARNRMRQTV 212


>gi|227528911|ref|ZP_03958960.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540]
 gi|227351185|gb|EEJ41476.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540]
          Length = 462

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 11/208 (5%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E  RFF ++      ++VAVS G DSM LL  L  + +     + +     V+H 
Sbjct: 7   FKRHLERGRFFDKN----DRVVVAVSTGVDSMVLLALLQELPASL---RPQIIVAHVNHR 59

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR+ +++E +++ D C   R+   V  W     PQ G+  AAR+ RY   ++  K   AT
Sbjct: 60  LRKQSEEEEQFIRDYCEDHRLKLVVHHWPLTEHPQNGIEEAARKMRYCFFAQVMKDEQAT 119

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  +D  ET+ M+  R    +   L G+ +   +     + RP L   ++ +R +
Sbjct: 120 ILLTAHHQNDLAETMLMKLTR--GGQLHQLIGIEEKRPFASGT-LERPLLNFPKQRLREY 176

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  ++ W ED +N +    R R R  V
Sbjct: 177 AVNNHLKWYEDLTNRELTVSRNRFRHQV 204


>gi|330001721|ref|ZP_08304094.1| tRNA(Ile)-lysidine synthetase [Klebsiella sp. MS 92-3]
 gi|328537568|gb|EGF63790.1| tRNA(Ile)-lysidine synthetase [Klebsiella sp. MS 92-3]
          Length = 349

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 9/181 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL  L  VL       +   A+ V H L   A D V +   +C + +
Sbjct: 19  LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSVHADDWVAHCRQICQQWQ 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140
           +   V     ++   G+ A AR ARY    +   T+NA  +++TA   DDQ ET+ +  +
Sbjct: 77  VPLGVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEVLVTAQHQDDQCETLLLALK 133

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLS M  + ++  +  + RP L   RE +R + L   +SW ED SN DD ++
Sbjct: 134 R--GSGPTGLSAMAPSSVFAGSR-LLRPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 190

Query: 201 R 201
           R
Sbjct: 191 R 191


>gi|301025926|ref|ZP_07189412.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 69-1]
 gi|300395781|gb|EFJ79319.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 69-1]
          Length = 432

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|313680072|ref|YP_004057811.1| tRNA(ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
 gi|313152787|gb|ADR36638.1| tRNA(Ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
          Length = 522

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 26/187 (13%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           +L     ++ AVSGG DS+         +   + G+    A  +DH LR  ++ + R+V 
Sbjct: 14  ALCGEGRVVAAVSGGGDSV------ALAVLLAAVGREAVVA-HLDHALRPGSEADARFVC 66

Query: 75  DVCSRL-------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           ++  RL       R+  + V+    + +  L A ARE RYA ++E A+   A  ++TAHT
Sbjct: 67  ELAGRLGFPCEQRRVDAAAVA---RRKRENLEAVARELRYAFLAEVARAYGAACVLTAHT 123

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +D  ETV ++  R  A + +G+              ++RP L   R ++R++L +R   
Sbjct: 124 LEDNAETVLLQLFRG-AGRALGIRAKRGR--------VARPLLEISRTELRAYLRERGER 174

Query: 188 WCEDPSN 194
           W EDPSN
Sbjct: 175 WLEDPSN 181


>gi|326202845|ref|ZP_08192712.1| tRNA(Ile)-lysidine synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986922|gb|EGD47751.1| tRNA(Ile)-lysidine synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 470

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 92/194 (47%), Gaps = 17/194 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSD 75
           Y   ++V +SGG DS+ LL  L+S+ ++     IK   + V+H LR  E  +DE  +V  
Sbjct: 18  YGEGVIVGISGGYDSVCLLHVLYSISNELG---IKIYPVHVNHMLRGEEALRDE-NFVRS 73

Query: 76  VCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            C+ L     + H  VS K    +T L  A R ARY + S  A+   A+ I  AH+ +DQ
Sbjct: 74  FCASLGLEVYVKHVDVSKKAKIEKTSLEEAGRNARYEVFSTVAEEQGASKIAVAHSRNDQ 133

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ MR  R     G GL G+        N  I RP L   R  I  ++ +  I    D
Sbjct: 134 AETILMRICR-----GTGLEGLRGMEYKRDN--IIRPLLDVDRYQIEEYVNKIGIEAVTD 186

Query: 192 PSNTDDRFERVRVR 205
            SN    + R R+R
Sbjct: 187 SSNLHTDYFRNRIR 200


>gi|317497137|ref|ZP_07955463.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895547|gb|EFV17703.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 425

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 11/160 (6%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYA 108
            +A+ ++H +R  A D+ ++V D+C +L I   +    V     + +  L  A R+ARY 
Sbjct: 5   ITAVHINHMIRREAVDDQKFVQDLCGQLSIPCKIFEIDVKQIAKREKMSLEEAGRKARYD 64

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             ++  K  NA  I  AH  +DQ ET   R  R     G G+ G       D NL   RP
Sbjct: 65  AFAKTMKKYNADKIAIAHHQNDQAETFLYRVVR-----GTGIYGAGAMREKDGNLI--RP 117

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            L  ++E+I  +L +   +W ED SN DD F R ++R  V
Sbjct: 118 LLCVKKEEIVKYLKEAGQAWVEDASNQDDAFARNQIRNQV 157


>gi|150020112|ref|YP_001305466.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429]
 gi|149792633|gb|ABR30081.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429]
          Length = 423

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 18/190 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ VSGG DSM LL  L+ V   +    I    ++VDH LR+ +K+E+  V +    L 
Sbjct: 23  ILIGVSGGVDSMTLLYLLNGV---KDILNIDIVCVTVDHGLRKESKEEINLVKEFSRSLD 79

Query: 82  I-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +        V+ +   K +  +  AAR+ RY       + + A+ I  AH  +D +E V 
Sbjct: 80  VPCISGEIDVLGYSKEK-KLSIEEAARKLRYEFFYRIKEKVGASKIAVAHNLNDLVENVL 138

Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R  R     G+ G+  +   I+        RP L   REDI  F     I +  D SN 
Sbjct: 139 FRLSRGAGPFGIYGMKPVKGNII--------RPLLFFTREDIEDFAGNNKIPYAVDKSNF 190

Query: 196 DDRFERVRVR 205
           D ++ R  +R
Sbjct: 191 DTKYTRNFIR 200


>gi|323170980|gb|EFZ56629.1| tRNA(Ile)-lysidine synthase [Escherichia coli LT-68]
          Length = 432

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|213965144|ref|ZP_03393342.1| tRNA(Ile)-lysidine synthetase [Corynebacterium amycolatum SK46]
 gi|213952258|gb|EEB63642.1| tRNA(Ile)-lysidine synthetase [Corynebacterium amycolatum SK46]
          Length = 334

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 6/190 (3%)

Query: 22  ILVAVSGGSDSMGLLI-ALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +++ +SGG+DS+ L   A    L  + +    K  A+ VDH L++ + +     + +   
Sbjct: 12  VVIGLSGGADSLALTAGACAEALGPKGALAGRKVHAVVVDHQLQQGSAEVAERAAHMARE 71

Query: 80  LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +     V++   N+    G    AR AR+ ++ E A++  A L M AHT DDQ ETV +R
Sbjct: 72  MGATAEVIAVDINNNSDRGPEYEARLARHTVLREVAQSRGAAL-MLAHTLDDQAETVVLR 130

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LS + D + +     I RP L  RR D +    +  +    DP N DD 
Sbjct: 131 LARGGGPQA--LSAIRDNLTWSDGTRILRPLLGVRRTDTQLCCEELGLKVWHDPHNHDDH 188

Query: 199 FERVRVRRFV 208
           + RVRVR+ +
Sbjct: 189 YARVRVRKTI 198


>gi|296448863|ref|ZP_06890695.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b]
 gi|296253629|gb|EFH00824.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b]
          Length = 313

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           + +  +VDH LR  A +E R V +    L   H ++ W+  KP++ +   AR+ARY L++
Sbjct: 17  RIAVATVDHGLRPEAAEEARRVGEWARALGFEHHILRWEGEKPRSRIQERARDARYRLLA 76

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A+T+ A+ I+ AH  DDQ ET+  R  R       GL+GM      D    +    L 
Sbjct: 77  DCARTVGASAIVAAHHADDQAETILFRLTRGSGV--AGLAGMAPASRLDGLALLRP-LLG 133

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
            R++ + +        +  DPSN +  + RVR+R
Sbjct: 134 LRKQALEALCEAAGQPFFRDPSNENPAYARVRLR 167


>gi|319891462|ref|YP_004148337.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161158|gb|ADV04701.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 429

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 25/219 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78
           HI+VAVS G DSM LL   H +L D +    + + + V H LRE ++ E  ++   C   
Sbjct: 10  HIVVAVSTGIDSMVLL---HQLLYDETLTYRQLTCLHVHHGLREASEQEATFIQHYCEQH 66

Query: 79  -------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                  RL ++  V   ++      +   ARE RY         ++A  ++TAH  DDQ
Sbjct: 67  DIPFYMKRLDLSDVVAEGRS------IQNDAREMRYQWFDTMMHQLDADGLLTAHHEDDQ 120

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET++ R    +  K    S    TI       + RP L   +  IR++  Q ++ + ED
Sbjct: 121 VETIFYRL---FTGKSTRSSLGMSTIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYFED 177

Query: 192 PSNTDDRFERVRVR-RFVRDIDLHALYLKMKKFQDLRVK 229
            SN ++ + R  +R R +  ID +A   ++K  Q L++K
Sbjct: 178 TSNANNTYVRNDIRNRILPQIDENA---QLKSQQLLKLK 213


>gi|42572523|ref|NP_974357.1| RSY3 (RASPBERRY 3); ATP binding / ligase, forming carbon-nitrogen
           bonds / nucleotide binding [Arabidopsis thaliana]
 gi|332643401|gb|AEE76922.1| protein raspberry 3 [Arabidopsis thaliana]
          Length = 660

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 25/214 (11%)

Query: 22  ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRY 72
           I + VSGG DSM L +         L  V  +++ G I    AI VDH LR+ +KDE   
Sbjct: 87  IALGVSGGPDSMALCVLTAKWKTEGLSCV--NKTDGFIDGLVAIVVDHGLRQESKDEAEL 144

Query: 73  VSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFD 129
           V    S++ I   + S  W + +P+ G L  AARE RY +IS         +++ AH  D
Sbjct: 145 VCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHAD 204

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIR 178
           DQ E   +R  R     G+  +     I           + + ++ + RP L   +ED+ 
Sbjct: 205 DQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMY 264

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                    W EDP+N    F R R+R  + +++
Sbjct: 265 KICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLE 298


>gi|269792457|ref|YP_003317361.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100092|gb|ACZ19079.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 469

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 94/189 (49%), Gaps = 20/189 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVL-SDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78
           ++VAVSGG DS+ L + L      ++ +G        VDH +RET+  +  +VS +    
Sbjct: 33  MVVAVSGGGDSVALALLLKRFWPGEQVWGH-------VDHGIRETSGRDADFVSALAESW 85

Query: 79  --RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             R  +    V     K ++  MAA R  R+A + + A  + A  I TAHT DDQ ETV 
Sbjct: 86  GIRCHVGRFHVPTDRIKGESMEMAA-RRVRHAFLEDLASRLGAGFIATAHTVDDQAETVM 144

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GL G+   I      W+ RP +  RR ++R +L + ++SW ED +N  
Sbjct: 145 LNLLR-----GTGLWGLA-GIPQRRGPWV-RPVIAMRRWELRRYLEESSVSWVEDETNLC 197

Query: 197 DRFERVRVR 205
             + R +VR
Sbjct: 198 CDYRRNQVR 206


>gi|298505922|gb|ADI84645.1| tRNA(Ile) lysidine-34 synthase, putative [Geobacter sulfurreducens
           KN400]
          Length = 471

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 29/219 (13%)

Query: 3   LSPIESVRFFVRS------LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           LSP+++V   VR+      +  P   ++VAVSGG+DS    +AL  +L   +  ++    
Sbjct: 4   LSPVDAVLKKVRAFNAEHGMFRPGDRVVVAVSGGADS----VALVDILVSLNELRLDLVV 59

Query: 56  ISVDHCLRETAKDEVRYVSDVC---------SRLRIAHSVVSWKNSKPQTGLMAAAREAR 106
             ++H LR  A DE     + C         SR     ++  W+    +  L  A R AR
Sbjct: 60  AHLNHKLRGAASDEDERFVEQCAQTYALPFVSRGEQVKALAEWE----RLSLEDAGRRAR 115

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           YA   + A    A  +  AH  DDQ ET+ MR  R     G+GLS M         +   
Sbjct: 116 YAFFDDVAAACGARTVALAHHADDQAETLLMRLVR--GAGGLGLSAMQPVGAGGKYV--- 170

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           RP L   R++I ++L  R +++ +D SNTD  F R R+R
Sbjct: 171 RPLLALGRQEIEAYLDARGLAFRQDQSNTDVAFLRNRIR 209


>gi|325579079|ref|ZP_08149035.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159314|gb|EGC71448.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae ATCC
           33392]
          Length = 430

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 8/184 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS  LL  +  +   R    +   AI + H L   A     +   +C +  
Sbjct: 18  LLIAFSGGLDSTALLSLVKKLSEKRP--HLSLRAIHIHHGLSPNADTWTTHCQQLCEQFA 75

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   ++     +   G+ A AREARY  I +H +      ++TAH  +DQ ET ++  +R
Sbjct: 76  IP-LIIEKVKVEMHNGIEAGAREARYRAILKHIQP--DEYLVTAHHLNDQTETFFLALKR 132

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G +   ++ L+ +   I RP L   R ++  ++ +  +SW ED SN D+ ++R
Sbjct: 133 GAGLQGLG-AMQKESQLFGMP--ILRPLLSFSRYELEDYVQRETLSWVEDESNQDNHYDR 189

Query: 202 VRVR 205
             +R
Sbjct: 190 NFLR 193


>gi|302388372|ref|YP_003824194.1| tRNA(Ile)-lysidine synthetase [Clostridium saccharolyticum WM1]
 gi|302199000|gb|ADL06571.1| tRNA(Ile)-lysidine synthetase [Clostridium saccharolyticum WM1]
          Length = 458

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           ++VA+SGG+DS+ LL+ L+ +  +      +  A+ V H LR    D  R Y  D+ +RL
Sbjct: 21  VIVALSGGADSVCLLVVLNELKEELGL---ELKAVHVHHGLRGKEADRDRDYSRDLSARL 77

Query: 81  RIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            ++ S V    +    +    +  A R  RY +  +     + T I  AH  DDQ ET+ 
Sbjct: 78  GVSFSCVQVDAALYAGEHGMSVEEAGRHLRYQIFEKERLDFSGTKIAVAHHRDDQAETIL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R    KG+G  GM       L   I RP L   RE+I ++L ++ IS+CED +N  
Sbjct: 138 YNLFRGTGLKGLG--GM-----RPLRDRIVRPLLCVGREEILAYLEEKRISYCEDSTNAQ 190

Query: 197 DRFERVRVRRFV 208
             + R R+RR +
Sbjct: 191 TDYVRNRIRRRI 202


>gi|198244025|ref|YP_002214197.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|254789043|sp|B5FJ36|TILS_SALDC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|197938541|gb|ACH75874.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326621940|gb|EGE28285.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 430

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A+  VR+   VC+R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHAESWVRHCETVCARWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|297570853|ref|YP_003696627.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931200|gb|ADH92008.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM
           20595]
          Length = 361

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 8/180 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV VSGGSDSM L   L  V      G I   A+ VDH +R  +  E  +V D+  R R
Sbjct: 27  VLVGVSGGSDSMALAATLAFVAP--KLG-ILVHAVCVDHGIRPESVQEAAFVRDIL-RKR 82

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-NAT---LIMTAHTFDDQLETVYM 137
                V   +    +G    AREARY  I+ +A+++ NA    ++   HT +DQ ETV M
Sbjct: 83  GVPVEVCRVDVDGSSGPEGNAREARYDAIATYARSLGNAAGPAVVFLGHTQNDQAETVLM 142

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    K +        +    ++ + RPFL   R+++R+   + ++ W +DPSN  D
Sbjct: 143 GFARGSGAKSIAGMPAVGHLPLHRDVPMQRPFLEFTRDELRTVCSELDVPWVDDPSNDLD 202


>gi|238911302|ref|ZP_04655139.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 430

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 136/325 (41%), Gaps = 29/325 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++ 
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD- 187

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQD 255
              R F+R   L AL L  +++      V  +  +      L+ + L   +   I  ++ 
Sbjct: 188 ---RNFLR---LRALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEG 240

Query: 256 ILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308
            L +   +L   +R +A     +      +P   ++ER+   +   +     C+  G   
Sbjct: 241 TLRLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDRE 300

Query: 309 IDR-RANFLWITRAVRNLPTLILYP 332
           I R ++   WI        T +++P
Sbjct: 301 IRRYQSQLWWIKTVAGQHETTVVWP 325


>gi|297563883|ref|YP_003682856.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848332|gb|ADH70350.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 334

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 90/200 (45%), Gaps = 14/200 (7%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  +R L      LVA SGG+DS+ L   +A  +    R+ G     A++VDH L+E 
Sbjct: 14  AVRRVLRDLPDDTTALVACSGGADSLALAGAVAFEAPRVGRTAG-----AVTVDHGLQEG 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +      V+ V + L +   +V         G  A+AR ARY  +          +++  
Sbjct: 69  SDRRAEDVAKVLAGLGLDPVLVRTVRVTGPGGPEASARRARYEALDGAVAERAPAVVLLG 128

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV +   R    +   L+GM   + + L     RP L   R  +R    +  
Sbjct: 129 HTLDDQAETVLLGLARGSGAR--SLAGMAPRVGHRL-----RPLLDLDRATVREACARMG 181

Query: 186 ISWCEDPSNTDDRFERVRVR 205
           +   EDP N D RF R RVR
Sbjct: 182 LDAWEDPHNLDPRFARSRVR 201


>gi|39996909|ref|NP_952860.1| cell cycle protein MesJ [Geobacter sulfurreducens PCA]
 gi|61216575|sp|Q74C65|TILS_GEOSL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|39983797|gb|AAR35187.1| cell cycle protein MesJ, putative [Geobacter sulfurreducens PCA]
          Length = 471

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 29/219 (13%)

Query: 3   LSPIESVRFFVRS------LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           LSP+++V   VR+      +  P   ++VAVSGG+DS    +AL  +L   +  ++    
Sbjct: 4   LSPVDAVLKKVRAFNAEHGMFRPGDRVVVAVSGGADS----VALVDILVSLNELRLDLVV 59

Query: 56  ISVDHCLRETAKDEVRYVSDVC---------SRLRIAHSVVSWKNSKPQTGLMAAAREAR 106
             ++H LR  A DE     + C         SR     ++  W+    +  L  A R AR
Sbjct: 60  AHLNHKLRGAASDEDERFVEQCAQTYALPFVSRGEQVKALAEWE----RLSLEDAGRRAR 115

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           YA   + A    A  +  AH  DDQ ET+ MR  R     G+GLS M         +   
Sbjct: 116 YAFFDDVAAACGARTVALAHHADDQAETLLMRLVR--GAGGLGLSAMQPVGAGGKYV--- 170

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           RP L   R++I ++L  R +++ +D SNTD  F R R+R
Sbjct: 171 RPLLALGRQEIEAYLDARGLAFRQDQSNTDVAFLRNRIR 209


>gi|308179642|ref|YP_003923770.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308045133|gb|ADN97676.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 448

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 132/284 (46%), Gaps = 30/284 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVS G DSM LL  L  + +     + +     V+H LRE ++ E  Y+   C +  
Sbjct: 23  VVVAVSTGVDSMVLLHLLQRLPAAE---RPRVVVAHVNHHLREQSQMEADYLRQYCQQQN 79

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +  W   + P++G+ AA R+ RY + ++  +   AT ++TAH  +DQ+ET  M+  
Sbjct: 80  LKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENRATAVLTAHHANDQVETYLMKLA 139

Query: 141 R--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R  D ++    L+G+  +  +     I RP L   ++ +R++  ++++ + ED +N D  
Sbjct: 140 RGGDISQ----LTGIATSRPFATGRLI-RPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVA 194

Query: 199 FERVRVR---------------RFVRDIDLHALYLKMKKFQDLRVKVNNAV----AMLIP 239
             R R+R               + V D       L M K Q + V ++  V    A+++ 
Sbjct: 195 LTRNRIRHRVVPELMTVNPQLLKHVADYQQQLTTLLMAKKQMVTVLLSQVVTATGALVVD 254

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283
           ++  +  +  +A+    L   +  LF   ++   +  GQ + P 
Sbjct: 255 QWGALPSQWQLAVFATWLEQQTQQLFTESKLQPLVSWGQRTRPA 298


>gi|309806956|ref|ZP_07700938.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b]
 gi|308166576|gb|EFO68773.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b]
          Length = 409

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 13/189 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + ++ 
Sbjct: 1   MAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYKLQ 57

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
                W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R  
Sbjct: 58  LEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLRSG 117

Query: 144 AEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
             + M     +    D  L      + RP L   +E++  +  +R +++  D +N ++  
Sbjct: 118 NVQEMNSLRPIRNWIDNSL------LVRPLLSFSKEELLVYAKKRKLAYVVDYTNQENET 171

Query: 200 ERVRVRRFV 208
            R R+R FV
Sbjct: 172 LRNRLRHFV 180


>gi|84624777|ref|YP_452149.1| cell cycle protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368717|dbj|BAE69875.1| cell cycle protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 434

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 138/344 (40%), Gaps = 37/344 (10%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    
Sbjct: 12  IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68

Query: 77  CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT-AHTFDDQLET 134
           C  L++   +V  +  +    GL AAAR AR+      A T+ A   +T AH  DDQ ET
Sbjct: 69  CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAF---AHTLAAGEWLTLAHHRDDQAET 125

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +R+ R   ++G+  +        D  LW  RP L   R D+ ++ L + + W EDPSN
Sbjct: 126 FLLRALRASGQEGLA-AMRPQRPFADGTLW--RPLLAHSRADLLAYALAQEVRWIEDPSN 182

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            D R +    R F+R   L  L  +  +  D   +     A L      + ++  +A+  
Sbjct: 183 ADPRHD----RNFLRSQVLPLLQQRWPQAADALAR----SAQLSADASALLLQQDMALLP 234

Query: 255 DILNIDSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRGC 301
            +      L  + LR               +A     +   G  ++ER +    + ++ C
Sbjct: 235 SVCTASGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQAC 294

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
            +  +V + R    L++ R     PT     +    WDG    Q
Sbjct: 295 FAWQQVEVRRWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQ 333


>gi|332095129|gb|EGJ00161.1| tRNA(Ile)-lysidine synthase [Shigella boydii 5216-82]
          Length = 432

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADSWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|315185670|gb|EFU19438.1| tRNA(Ile)-lysidine synthetase [Spirochaeta thermophila DSM 6578]
          Length = 472

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 104/230 (45%), Gaps = 30/230 (13%)

Query: 6   IESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +E V  F +    V  A +LVA SGG DS  LL   HS+   R    +    + +DH +R
Sbjct: 2   LEKVYTFFKGFDHVEGAVVLVACSGGPDSTALL---HSLFLLRQRLNLTLKVVYLDHGIR 58

Query: 64  ETAK--DEVRYV------SDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
             ++   E R+V       D+ S + R+    +  +    +  +   ARE RYA   E  
Sbjct: 59  PRSERDQEYRFVMSLAETRDLPSHIKRLPEGWILHRAKASKKSVEEVAREERYAFFEELL 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCR 173
                  +   HT DDQ+ETV  R  R      + G+S + D  L        RP L C 
Sbjct: 119 SKGEGDYVALGHTRDDQVETVVFRFLRGSDPLALRGMSPVRDRYL--------RPLLSCS 170

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           R ++ SFL ++ +S+ ED SN  D ++    R F+R   +H L L  K+F
Sbjct: 171 RSEVLSFLQEQGLSYLEDSSNEKDSYD----RNFLR---IHVLPLLEKRF 213


>gi|114776817|ref|ZP_01451860.1| PP-loop [Mariprofundus ferrooxydans PV-1]
 gi|114552903|gb|EAU55334.1| PP-loop [Mariprofundus ferrooxydans PV-1]
          Length = 324

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 27/213 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++P  SV   ++    PA + V  SGG+DS  LL+ L            +  A  VDH 
Sbjct: 1   MITPFNSVAGRMQMDGLPAEVAVGWSGGADSTALLLMLQQQ-------GYRVQAWHVDHG 53

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKT 116
            RE++  E   +++      I   V      S +N +      A AR+ RYA   + ++ 
Sbjct: 54  WRESSIKETELLAEKARGWEIELQVARLPAPSGRNRE------AEARKGRYAQFEQWSEA 107

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---DLNLWISRPFLRCR 173
              T +   H  DDQ ETV MR       +G G+SG C  +        L I RP L+ +
Sbjct: 108 TGITTLCLGHHRDDQAETVCMR-----MLQGAGISG-CRGMQQRRRHGRLDIFRPLLQVK 161

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
             ++++ L   +I+W EDPSN D    R R+R+
Sbjct: 162 AGELKAALRAADINWLEDPSNNDMTIWRNRIRQ 194


>gi|312898239|ref|ZP_07757630.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359]
 gi|310620736|gb|EFQ04305.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359]
          Length = 461

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 140/334 (41%), Gaps = 29/334 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           ++VAVSGG DS+ LL  L + L DR    +   A  V+H LR  A +E  +V      + 
Sbjct: 25  VIVAVSGGPDSIALLHIL-AALQDR--WSLHLVAAYVNHGLRAAAFEEEVFVESQARAVG 81

Query: 81  ------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                 RI  + ++ K       +  A R  RYA  SE A+   A  I   H  DDQ ET
Sbjct: 82  AEFYCRRIDAAAIAEKQG---LSIETAGRNERYAFFSELAEKTGAVRIAVGHHEDDQAET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V M   R     G G+SG     +   N  I RP L   R+DI + L + N+ W  D SN
Sbjct: 139 VLMHLLR-----GGGVSGA--GAMKAKNGLIIRPLLCVPRQDILTALNEVNLPWRVDESN 191

Query: 195 TDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMRSI 249
               + R R+R      +++I+   +   + +F  +  + N  +     K L +   R+ 
Sbjct: 192 ESREYLRNRIRHDIMPLLKNINPQ-VTAALNRFASISRQENMYMENEAVKQLKLAERRNE 250

Query: 250 IAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
                DI    ++   L   ++R++       I  P + ++ER++   ++     V    
Sbjct: 251 RGFYLDIPILTDLHEALQRRVVRLAVQEMTKDIYAPDFAAVERILGLCRATSGKQVRFKD 310

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340
           +++ RR   L  TR V    TL     E     G
Sbjct: 311 LIVYRRGRGLCFTRGVARKATLFTTDREEVFIKG 344


>gi|157376277|ref|YP_001474877.1| tRNA(Ile)-lysidine synthetase [Shewanella sediminis HAW-EB3]
 gi|157318651|gb|ABV37749.1| tRNA(Ile)-lysidine synthetase [Shewanella sediminis HAW-EB3]
          Length = 494

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 7/183 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + +++A SGG DS  L   L S    R   + ++  + V H L   A   VR+     ++
Sbjct: 29  SQLVLAYSGGVDSEVLAQGLASFA--RHNPQYRYLLVHVHHGLSSNADAWVRHCQSQAAK 86

Query: 80  LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            ++   +   K    P+  + A AR ARY  I+      +A  ++TAH  DDQLETV + 
Sbjct: 87  YQLPIEIRQVKVKMGPRLSIEAQARSARYEAITSLMAPGDA--LLTAHHLDDQLETVLLA 144

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    KG  LS M +   +D N  + RP L   RE I S    + I+  ED SN D +
Sbjct: 145 LKRGLGPKG--LSAMGEVQAFDNNKQLLRPLLSISREQIESLATSQAIAHIEDESNQDTK 202

Query: 199 FER 201
           ++R
Sbjct: 203 YDR 205


>gi|313201479|ref|YP_004040137.1| tRNA(ile)-lysidine synthetase [Methylovorus sp. MP688]
 gi|312440795|gb|ADQ84901.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. MP688]
          Length = 439

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 19/206 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + ++ F+        +LVA+SGG DS  LL  L ++ ++     I+ SA+ V H L   A
Sbjct: 3   QHLQQFITQHHIEGRLLVALSGGLDSCVLLHLLATLPNNPG---IRLSAMHVHHGLSPHA 59

Query: 67  KDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +   +C+     L++ H  V   + +   GL AAAR  RY    E  +  +A  +
Sbjct: 60  DQWAEHCQRLCASHAIPLQVVHVQVPRDSGQ---GLEAAARHLRY----EAMRAAHADYV 112

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + AH  DDQ ETV ++  R     G G+ G+     +D    + RP L   R  +  +  
Sbjct: 113 VLAHHQDDQAETVMLQLLR-----GAGMRGLAAMASHDAQQRLLRPLLDISRAQLAEYAA 167

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208
           Q  + W ED SN D  ++R   R+ V
Sbjct: 168 QHQLEWVEDESNQDTHYDRNFCRQQV 193


>gi|27262508|gb|AAN87535.1| cell cycle protein MesJ [Heliobacillus mobilis]
          Length = 308

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 16/189 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCSRL 80
           I++A+SGG+DS+ LL+    V     FG I+ +A   +H +R    DE   +V+++ +RL
Sbjct: 24  IVIALSGGADSVCLLLLFKKV--SPQFG-IELAAAHYNHGMRGKESDEDAAFVAELTNRL 80

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           ++      + + W   +P T  M AAR  RY  +S  A+   A  I  AH  DD  ETV 
Sbjct: 81  QVPLFLETAPLKWWQQEPGTK-MEAARRLRYDFLSRSAEQAGARWIALAHHADDMAETVL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R     G G+ G+   I      ++ RP L  RR+++  FL      W  D SN  
Sbjct: 140 FHMLR-----GSGIKGLS-GIPAKRGPFV-RPLLPFRRKELEEFLKAEGQHWRHDSSNDS 192

Query: 197 DRFERVRVR 205
           D + R R+R
Sbjct: 193 DVYTRNRIR 201


>gi|307565061|ref|ZP_07627574.1| tRNA(Ile)-lysidine synthetase [Prevotella amnii CRIS 21A-A]
 gi|307346230|gb|EFN91554.1| tRNA(Ile)-lysidine synthetase [Prevotella amnii CRIS 21A-A]
          Length = 456

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 21/192 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR- 79
           LVA+SGG+DS+ LL+ LH +         K +A+  +  LR  E+ +DE ++  D+C+R 
Sbjct: 22  LVALSGGADSVSLLLILHQL-------GYKINAVHCNFKLRGEESYRDE-QFCIDLCNRH 73

Query: 80  ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
              L+  H   +   S  +  +  AARE RY    +  K+INA  +   H  +D +ET+ 
Sbjct: 74  DIPLKRIHFDTTEYASLRKISIEMAARELRYTYFEQLRKSINAEGVCVGHHQEDSVETIL 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G+ G+  T +   N  + RP L C R+DI +F++     +  D SN  
Sbjct: 134 LNLTR-----GTGIHGL--TGIAPRNGNVIRPLLSCTRKDIETFIIGEGEHYVTDSSNLV 186

Query: 197 DRFERVRVRRFV 208
               R ++R  V
Sbjct: 187 SNVVRNKLRLLV 198


>gi|269218250|ref|ZP_06162104.1| tRNA(Ile)-lysidine synthase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212378|gb|EEZ78718.1| tRNA(Ile)-lysidine synthase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 351

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/179 (37%), Positives = 93/179 (51%), Gaps = 10/179 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGGSDSM L  A  +V   R  G I  S+++VDH  RE + DE   V      + +
Sbjct: 31  LLAVSGGSDSMAL--AQAAVFVCRREG-IVASSLTVDHGWREGSADEAASVRSALEAMGV 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQR 141
             + V+   SK   GL +AAR ARYA ++E A+++     ++  HT DDQ ETV M   R
Sbjct: 88  ESAGVARVESKGGGGLESAARAARYAALAEAARSMPGRAAVVCGHTADDQAETVLMGLGR 147

Query: 142 DYAEK---GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               +   GM   G C       ++ + RPFL  RR D+R  L    + W EDP+N  D
Sbjct: 148 GSGPRSIAGMPAVGACPGA---PDVPLVRPFLGLRRADLRQALASEGVEWVEDPTNDVD 203


>gi|152968782|ref|YP_001333891.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953631|gb|ABR75661.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 437

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 175/425 (41%), Gaps = 52/425 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVA SGG DS    + LH ++  R     +   A+ V H L   A   V +   VC + 
Sbjct: 19  LLVAFSGGLDST---VLLHQLVQLREQDPALTLRAVHVHHGLSAHADQWVAHCRQVCQQW 75

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRS 139
           ++   V     ++   G+ A AR ARY    E   T+NA  +++TA   DDQ ET+ +  
Sbjct: 76  QVPLVVHHVTLARGGLGVEAHARAARYQAFQE---TLNAGEVLVTAQHQDDQCETLLLAL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R       GLS M  +  +  +  + RP L   RE +R + L   +SW ED SN DD +
Sbjct: 133 KRGSGP--TGLSAMAPSSAFAGSR-LLRPLLNETRESLRQWALAHQLSWIEDESNQDDTY 189

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDI 256
           +    R F+R   +  L  +   F +   +  +  A    L+ + L   + S++A     
Sbjct: 190 D----RNFLRLRVIPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASLVA-EDGS 244

Query: 257 LNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVI 309
           L I         R +A     + G Q  +P     ER+   +   +     C+ +G   +
Sbjct: 245 LAIAPLATMSPPRRAALLRRWLAGQQAPMPAREVPERLWHEVALAREDASPCLRLGEFTV 304

Query: 310 DR-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R +    W    V+ LP      +    W    Q   L+D L ++  Q   +   PS  
Sbjct: 305 RRFQQRLYW----VKYLPGQT---DSVQRWPDWRQPLRLADGLGELTLQPGGRLRPPSAD 357

Query: 369 PPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAYA---FSI 410
            P+  + RA   +    + GG+ L        +AP+ R  T      + P+A A   F  
Sbjct: 358 EPVTVRFRASGHLHIVGRHGGRKLKKLWQELGVAPWRRDTTPLLFYGETPIAAADDLFVT 417

Query: 411 SFGKV 415
           + G+V
Sbjct: 418 TEGEV 422


>gi|74310809|ref|YP_309228.1| tRNA(Ile)-lysidine synthetase [Shigella sonnei Ss046]
 gi|73854286|gb|AAZ86993.1| cell cycle protein [Shigella sonnei Ss046]
          Length = 432

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|325287915|ref|YP_004263705.1| tRNA(Ile)-lysidine synthase [Cellulophaga lytica DSM 7489]
 gi|324323369|gb|ADY30834.1| tRNA(Ile)-lysidine synthase [Cellulophaga lytica DSM 7489]
          Length = 434

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 170/390 (43%), Gaps = 42/390 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLR 81
           LVA SGG DS+ +L  L + L      ++ FS    +  LR+ A D +  +V  +  +L+
Sbjct: 22  LVACSGGVDSV-VLAHLCAAL------QLDFSIAHCNFKLRDAASDADEEFVRQLALQLQ 74

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               V ++      +K +  +  AAR+ RY+  ++  K  N   ++T H  DD LET  +
Sbjct: 75  KKIYVTNFNTVGYVAKNKVSIQMAARDLRYSWFAKLVKENNLETVLTGHQADDNLETFLI 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G+ G+    +      ++RP L   R++I  F  Q NI W ED SN + 
Sbjct: 135 NLSR-----GTGVGGLLG--IPSKTSALARPLLPFTRDEIEDFAKQNNIKWREDKSNKET 187

Query: 198 RFERVRVR-RFVRDI-DLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           ++ R R+R + V ++ +LH  +L+         Q+  V   + + +L  K L V    +I
Sbjct: 188 KYLRNRIRHKIVPELKELHPTFLQNFNNTQAYLQETSVLAEDYIKLLKNK-LFVRKNGVI 246

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVV 308
            +S   L     L  YL  +         S  G+   + V  +L   SGK+      R+V
Sbjct: 247 EVSVSKLLTYKPLKTYLYAL--------FSSYGFTEWQDVANLLTAMSGKQVLSRTHRLV 298

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS-G 367
            +R    L   +   +   L+   +ET  +  +  FQN+S+  I I   +    D     
Sbjct: 299 KNRENLLLQELKEANSDVYLVNKDQETISYPIKLHFQNVSE--IGITNDTTIYVDKSKLK 356

Query: 368 IPPIIAQRALSSM--PSKEGGKPLLAPFSR 395
            P ++ +R    +  P  + GK  L+ F +
Sbjct: 357 FPLVLRKREEGDVFYPFGQNGKKKLSKFYK 386


>gi|319399666|gb|EFV87920.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis FRI909]
          Length = 431

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 35/229 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           AHI+VAVS G DSM LL   +S+L+D      K + + V+H LRE + +E  ++ + C +
Sbjct: 12  AHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCQQ 68

Query: 80  LRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             I           +V+  NS  Q      AR+ RY    +    + A +++TAH  DDQ
Sbjct: 69  HHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIISQLRADVLLTAHHLDDQ 123

Query: 132 LETVYM-----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           LET+       RS R+     +G++       Y     + RP L  ++ +I ++     I
Sbjct: 124 LETIIYRLFTGRSTRN----SLGMTYES----YFNQYKVYRPMLNLKKTEILAYQHANQI 175

Query: 187 SWCEDPSNTDDRFERVRVRRFV-----RDIDLHALY-LKMKKFQDLRVK 229
            + ED SN D ++ R  +R+ +      +  L+A   LK+K + D+ ++
Sbjct: 176 PYYEDMSNQDRKYVRNDIRQRIIPAINENPHLNAYQLLKLKDWHDIELQ 224


>gi|282856665|ref|ZP_06265933.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455]
 gi|282585514|gb|EFB90814.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455]
          Length = 434

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 23/194 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           +L+ VSGGSDSM LL A       R +   +   + +DH LR  +  +  +V   C+ L 
Sbjct: 25  VLLGVSGGSDSMSLLCAF-----SRLYEPSQLVVLHMDHGLRGASSRDGEFVKKRCAELG 79

Query: 81  ------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                 R   S +S K    +    AA R  RY L  E A+     L+   HT DD  E 
Sbjct: 80  VRCVIERRPVSALSRKGESEE----AAGRRLRYELYEETAQRFGCRLVALGHTRDDLAEN 135

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             M   R     G GL G+   +    +++I RP L  RR+++R FL  +  SW +D +N
Sbjct: 136 TLMNLAR-----GCGLWGVAG-MPEQRDIYI-RPLLSFRRQELRDFLRAQGWSWVDDETN 188

Query: 195 TDDRFERVRVRRFV 208
             + ++R RVR  V
Sbjct: 189 ALNIYQRNRVRNEV 202


>gi|297620920|ref|YP_003709057.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU
           86-1044]
 gi|297376221|gb|ADI38051.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU
           86-1044]
          Length = 438

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 8/196 (4%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F  R   + A +L+A SGG DSM LL     ++  R    ++F    VDH  R+ + DE 
Sbjct: 11  FLKRCTPFNAPVLIACSGGPDSMALL---RMMVEYRKTHSVRFGVAHVDHRWRKESADEA 67

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             +  +C  + +   +        Q  L  A R  R     +         +M  H  DD
Sbjct: 68  ETLRALCREIDVPFHLKEIDPEAMQGNLEEACRHFRQTYFLQLCFDHGYGSVMLGHHLDD 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWC 189
           Q ETV  R       +  G  GM +  +Y+ +  W  RPFL+ R++ + ++L  RN  + 
Sbjct: 128 QAETVLKRVFEGAKLEKCG--GMQEISVYETIPFW--RPFLQVRKQKLIAWLNLRNFPYF 183

Query: 190 EDPSNTDDRFERVRVR 205
            DP+N D  F R ++R
Sbjct: 184 IDPTNNDSSFLRSKIR 199


>gi|254555612|ref|YP_003062029.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1]
 gi|254044539|gb|ACT61332.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1]
          Length = 448

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 11/190 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVS G DSM LL  L  + +     + +     V+H LRE ++ E  Y+   C +  
Sbjct: 23  VVVAVSTGVDSMVLLHLLQRLPAAE---RPRVVVAHVNHHLREQSQMEADYLRQYCQQQN 79

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +  W   + P++G+ AA R+ RY + ++  +   AT ++TAH  +DQ+ET  M+  
Sbjct: 80  LKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENRATAVLTAHHANDQVETYLMKLA 139

Query: 141 R--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R  D ++    L+G+  +  +     I RP L   ++ +R++  ++++ + ED +N D  
Sbjct: 140 RGGDISQ----LTGIATSRPFATGRLI-RPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVA 194

Query: 199 FERVRVRRFV 208
             R R+R  V
Sbjct: 195 LTRNRIRHRV 204


>gi|28377429|ref|NP_784321.1| cell cycle protein MesJ [Lactobacillus plantarum WCFS1]
 gi|300768962|ref|ZP_07078853.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|61216640|sp|Q88Z33|TILS_LACPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28270261|emb|CAD63162.1| cell cycle protein MesJ [Lactobacillus plantarum WCFS1]
 gi|300493483|gb|EFK28660.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 448

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 11/190 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVS G DSM LL  L  + +     + +     V+H LRE ++ E  Y+   C +  
Sbjct: 23  VVVAVSTGVDSMVLLHLLQRLPAAE---RPRVVVAHVNHHLREQSQMEADYLRQYCQQQN 79

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +  W   + P++G+ AA R+ RY + ++  +   AT ++TAH  +DQ+ET  M+  
Sbjct: 80  LKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENRATAVLTAHHANDQVETYLMKLA 139

Query: 141 R--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R  D ++    L+G+  +  +     I RP L   ++ +R++  ++++ + ED +N D  
Sbjct: 140 RGGDISQ----LTGIATSRPFATGRLI-RPLLTWSKDQLRNYAAEQHVVYFEDVTNQDVA 194

Query: 199 FERVRVRRFV 208
             R R+R  V
Sbjct: 195 LTRNRIRHRV 204


>gi|218703442|ref|YP_002410961.1| tRNA (Ile)-lysidine synthetase [Escherichia coli UMN026]
 gi|293403257|ref|ZP_06647354.1| tilS [Escherichia coli FVEC1412]
 gi|298378793|ref|ZP_06988677.1| tilS [Escherichia coli FVEC1302]
 gi|300900770|ref|ZP_07118916.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 198-1]
 gi|218430539|emb|CAR11405.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UMN026]
 gi|284919963|emb|CBG33018.1| tRNA(Ile)-lysidine synthase [Escherichia coli 042]
 gi|291430172|gb|EFF03186.1| tilS [Escherichia coli FVEC1412]
 gi|298281127|gb|EFI22628.1| tilS [Escherichia coli FVEC1302]
 gi|300355755|gb|EFJ71625.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 198-1]
          Length = 431

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRAENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|300920126|ref|ZP_07136579.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 115-1]
 gi|300412860|gb|EFJ96170.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 115-1]
          Length = 432

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADTWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC R ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCKRWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|269926166|ref|YP_003322789.1| tRNA(Ile)-lysidine synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789826|gb|ACZ41967.1| tRNA(Ile)-lysidine synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 442

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 18/196 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV----RYVSDVC 77
           +++ +SGG+DS+ L   L+ +   RS   I  S    DH LR  + D+     +Y+    
Sbjct: 1   MILGLSGGADSIALFHVLYEL---RSILGINISVAHFDHRLRPESSDQASQLAKYIEQFD 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               +  + V+    + +  +   AR+ RY  ++  A+  NA L+  AH   DQ ET  +
Sbjct: 58  VNFYLGSADVAGAALQAKASIEDTARKYRYDFLAACARKENA-LVCVAHNQQDQAETFLL 116

Query: 138 RSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
              R     G GL G+C     D +  + ++ + RPFL    EDIR++    ++   EDP
Sbjct: 117 NLAR-----GTGLDGLCGMLPIDRVPGNPDVELVRPFLGIAHEDIRNYCRLNSLPVIEDP 171

Query: 193 SNTDDRFERVRVRRFV 208
           SN    F R ++R  V
Sbjct: 172 SNLSLDFTRNKIRHLV 187


>gi|319654930|ref|ZP_08009004.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
 gi|317393355|gb|EFV74119.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
          Length = 462

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 105/253 (41%), Gaps = 34/253 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V VSGG DS+ LL   H   + R   +I+  A  VDH  R E +  +  +V D C + 
Sbjct: 22  IVVGVSGGPDSIALL---HYFWNQRQQLQIELIAAHVDHMFRGEESFQDAMFVKDYCRKK 78

Query: 80  ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
                +  + V     K       AAR+ RY+     AK   A  I   H  DDQ+ET+ 
Sbjct: 79  AIPFEMERANVPEYMEKSGKSSQTAARDCRYSFYQRTAKKYGAEYIALGHHGDDQVETIL 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G   +G+     +  + +I RPFL   R +I  + L+  ++   DPSN  
Sbjct: 139 MRLTR--GSTGSARAGIPFKRPFG-DYFIIRPFLCLNRAEIEDYCLKERLNPRRDPSNEK 195

Query: 197 DRFERVRVR-------------------RFVRDIDLHALYLK----MKKFQDLRVKVNNA 233
             + R R R                   RF  D+     YL+     K    ++ KVN  
Sbjct: 196 GIYSRNRFRQEVLPFLRKENPQVHEHFQRFSEDLQSDEAYLQELTVHKMNTVMKKKVNEE 255

Query: 234 VAMLIPKYLTVHM 246
           ++M I  +  + M
Sbjct: 256 ISMDIDAFEAMPM 268


>gi|188995854|ref|YP_001930106.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277]
 gi|226695545|sp|B2RMB4|TILS_PORG3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|188595534|dbj|BAG34509.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277]
          Length = 454

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 89/193 (46%), Gaps = 26/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE-VRYVSDVC 77
           +LVA+SGG+DS+ LL  L      R  G    +A    HC   LR    DE   +V  +C
Sbjct: 26  VLVALSGGADSVALLCVL------RELGYETVAA----HCNFHLRGVESDEDAAFVEGLC 75

Query: 78  SRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             L     RI    V +   +    +  AARE RY       K +    +  AH  DD  
Sbjct: 76  RDLDVPLHRIDFDTVRYARER-SISIEMAARELRYEWFGLLRKELAIEYVAVAHHADDNA 134

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +   R     G G+SG+C  + Y  N  I RP L   R++I ++LL + I++  D 
Sbjct: 135 ETMVLNLCR-----GTGISGLC-GMPYKRNDGIVRPLLDATRDEIEAYLLDQKITYRTDS 188

Query: 193 SNTDDRFERVRVR 205
           SN D RF R  VR
Sbjct: 189 SNEDTRFRRNLVR 201


>gi|238893184|ref|YP_002917918.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545500|dbj|BAH61851.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 433

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL  L  VL       +   A+ V H L   A D V +   +C + +
Sbjct: 15  LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSAHADDWVAHCRQICQQWQ 72

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140
           +   V     ++   G+ A AR ARY    +   T+NA  +++TA   DDQ ET+ +  +
Sbjct: 73  VPLVVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEVLVTAQHQDDQCETLLLALK 129

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLS M  +  +  +  + RP L   RE +R + L   +SW ED SN DD ++
Sbjct: 130 RGSGP--TGLSAMAPSSAFAGSR-LLRPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 186

Query: 201 R 201
           R
Sbjct: 187 R 187


>gi|74316607|ref|YP_314347.1| cell cycle protein MesJ [Thiobacillus denitrificans ATCC 25259]
 gi|74056102|gb|AAZ96542.1| cell cycle protein MesJ [Thiobacillus denitrificans ATCC 25259]
          Length = 445

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 25/204 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
             R +   A +++A+SGG DS+   + LH + S R   +   +A+ V H L   A D   
Sbjct: 5   LARHVFSGARLVLALSGGLDSV---VLLHVLASLRGRHRFALAAVHVHHGLSPHASD--- 58

Query: 72  YVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +D C RL  AH++      V      P  G  AAAR  R+ + +     ++A  ++TA
Sbjct: 59  -WADFCERLCAAHALDLQVERVHIAGDDP-AGTEAAARRERHRVFAR----LDADFVLTA 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS---RPFLRCRREDIRSFLL 182
           H  DDQ ETV ++  R    KG  L+ M    L     W +   RP L   R  IR+   
Sbjct: 113 HHLDDQAETVLLQLLRGAGPKG--LAAMPQ--LRRPAGWRAAQLRPLLDVSRRAIRAHAQ 168

Query: 183 QRNISWCEDPSNTDDRFERVRVRR 206
           +  ++W ED SN D R+ R  +RR
Sbjct: 169 RHGLAWVEDESNLDLRYRRNALRR 192


>gi|26246135|ref|NP_752174.1| tRNA(Ile)-lysidine synthetase [Escherichia coli CFT073]
 gi|227884899|ref|ZP_04002704.1| PP-loop superfamily ATPase [Escherichia coli 83972]
 gi|300993591|ref|ZP_07180447.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 45-1]
 gi|301049898|ref|ZP_07196824.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 185-1]
 gi|61216659|sp|Q8FL00|TILS_ECOL6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|26106532|gb|AAN78718.1|AE016755_218 Putative cell cycle protein mesJ [Escherichia coli CFT073]
 gi|227838037|gb|EEJ48503.1| PP-loop superfamily ATPase [Escherichia coli 83972]
 gi|300298351|gb|EFJ54736.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 185-1]
 gi|300406514|gb|EFJ90052.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 45-1]
 gi|307552038|gb|ADN44813.1| tRNA(Ile)-lysidine synthase [Escherichia coli ABU 83972]
          Length = 437

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|300362403|ref|ZP_07058579.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus gasseri JV-V03]
 gi|300353394|gb|EFJ69266.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus gasseri JV-V03]
          Length = 431

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 15/208 (7%)

Query: 7   ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E   FF ++   +     L+A SGG DS+ L   L + L D S   I      +DHCLR+
Sbjct: 3   EFTNFFTKNNIEIKNKKFLLAASGGPDSVALFHMLVNFLPDPSEQLI---VAHLDHCLRK 59

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123
            +  E   +  + +  ++     SW  +  PQTG+ A ARE RYA ++   K      ++
Sbjct: 60  DSYLESELLQRLATAFKVKLIEKSWPLALHPQTGIEARAREFRYAFLANTGKKYQVDYLL 119

Query: 124 TAHTFDDQLETVYMRSQR--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           TAH  DD +E + ++  R  D AE   + + G  ++      + + RP ++  ++ +  +
Sbjct: 120 TAHHGDDLIENILLKFIRSGDVAEMNSLQVVGNFNS------MKLLRPLIKYSKDQLLEY 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
             Q ++ + ED +N +D   R R+R  V
Sbjct: 174 DKQNSLDYIEDETNFEDDTLRNRLRHHV 201


>gi|323465368|gb|ADX77521.1| tRNA(Ile)-lysidine synthetase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 429

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 103/219 (47%), Gaps = 25/219 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-- 78
           HI+VAVS G DSM LL   H +L D +    + + + V H LRE ++ E  ++   C   
Sbjct: 10  HIVVAVSTGIDSMVLL---HQLLYDETLTYRQLTCLHVHHGLREASEQEATFIQHYCEQH 66

Query: 79  -------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                  RL ++  V   ++      +   ARE RY         ++A  ++TAH  DDQ
Sbjct: 67  DIPFYMKRLDLSDVVAEGRS------IQNDAREMRYQWFDTMMHQLDADGLLTAHHEDDQ 120

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ETV+ R    +  K    S    TI       + RP L   +  IR++  Q ++ + ED
Sbjct: 121 VETVFYRL---FTGKSTRSSLGMSTIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYFED 177

Query: 192 PSNTDDRFERVRVR-RFVRDIDLHALYLKMKKFQDLRVK 229
            SN  + + R  +R R +  ID +A   ++K  Q L++K
Sbjct: 178 TSNASNTYVRNDIRNRILPQIDENA---QLKSQQLLKLK 213


>gi|315294592|gb|EFU53939.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 153-1]
          Length = 437

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|312796646|ref|YP_004029568.1| tRNA(Ile)-lysidine synthetase TilS [Burkholderia rhizoxinica HKI
           454]
 gi|312168421|emb|CBW75424.1| tRNA(Ile)-lysidine synthetase TilS [Burkholderia rhizoxinica HKI
           454]
          Length = 476

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 14/193 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + +A SGG DS  LL A     + R  G  +  A+ V H L   A     + +DV  R
Sbjct: 28  ASVAIAFSGGIDSTVLLHA-----ATRVLGARRCVALHVHHGLSPHADAWRSHCADVACR 82

Query: 80  LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           L +A    +   ++ PQ  + A AR+ARYA + +        ++   H  DDQ ETV ++
Sbjct: 83  LDVAFDCRAVAITRTPQHSVEALARDARYAALEQMCAAHRVRVLWLGHHADDQAETVLLQ 142

Query: 139 SQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R     G GL G+    L+ +    L   RP L   R  + ++  Q  + W ED SN 
Sbjct: 143 LLR-----GAGLPGLAAMPLHRVLPNGLIHVRPLLPVLRASLDAYARQHTLRWIEDESNA 197

Query: 196 DDRFERVRVRRFV 208
           D R+ R  VRR V
Sbjct: 198 DLRYARNAVRRHV 210


>gi|118443998|ref|YP_877128.1| cell cycle protein MesJ [Clostridium novyi NT]
 gi|118134454|gb|ABK61498.1| Cell cycle protein MesJ, putative [Clostridium novyi NT]
          Length = 464

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++VA+SGG DS+ LL  LH++  + +   I   A  V+HCLR E A ++  YV  +C  L
Sbjct: 21  VVVALSGGPDSICLLHILHTLKDEIN---ISIVAAHVNHCLRGEAADNDEMYVKKICEEL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    V   + +       A RE RY    E    IN   I  AH  +DQ ETV 
Sbjct: 78  GIQCFVKREDVHRISKERGISCEMAGREVRYQFFEEVLHKINGNKIAIAHNANDQAETVL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G GL G+        N+++ RP +   R++I ++     ++   D +N +
Sbjct: 138 MRILR-----GTGLEGLVGIRPVRDNIFV-RPIINLTRDEIENYCDINKLNPRIDKTNFE 191

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 192 NIYTRNKIR 200


>gi|331671694|ref|ZP_08372492.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA280]
 gi|331071539|gb|EGI42896.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA280]
          Length = 432

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G+   G            + RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAGLSAMGKVSEFAGTR---LIRPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|291166567|gb|EFE28613.1| tRNA(Ile)-lysidine synthase [Filifactor alocis ATCC 35896]
          Length = 466

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 17/206 (8%)

Query: 6   IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +E++R    +L+ P   ++VA SGG DS+ LL  LH + ++     IK  A  ++H +R 
Sbjct: 8   LETIR--QNNLIQPKEKVIVAFSGGPDSVCLLHLLHELKAELD---IKLYAFHLNHQIRG 62

Query: 65  -TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
             A  +  Y   +C    I   V S          +  L  AAR+ RY  +      +NA
Sbjct: 63  LDAHRDAWYCLSLCDEYDIPFFVDSTDVPGYAQNMKMSLEEAARDVRYKKLFYLKSILNA 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I  AH  DDQ+ETV MR  R     G GL G+   +   L+  I RP L  ++++I  
Sbjct: 123 DKIAVAHNMDDQVETVLMRMMR-----GTGLYGL-KGMEQLLSNGIIRPLLSVQKKEIIE 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
            L Q  I W  D +N +D + R ++R
Sbjct: 177 ELEQNGIHWQVDTTNQEDNYTRNKIR 202


>gi|215485349|ref|YP_002327780.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966325|ref|ZP_07780551.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 2362-75]
 gi|215263421|emb|CAS07741.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289568|gb|EFR17462.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 2362-75]
          Length = 437

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADVWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSAFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|116515015|ref|YP_802644.1| hypothetical protein BCc_073 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256869|gb|ABJ90551.1| tRNA(Ile)-lysidine synthetase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 435

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 145/293 (49%), Gaps = 28/293 (9%)

Query: 12  FVRSLV--YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           F++ L   YP     L+A+SGG DS  L   L  ++  + F +I F  I ++H L   AK
Sbjct: 2   FIKKLFKKYPTKKKFLLALSGGVDSTVLFYQL--IIWKKKFQEINFRTIHINHHLHSHAK 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              ++  ++C + +I   +       K + G+   +R  R  +  ++   +   +++T H
Sbjct: 60  LAQKHCINICKKNKIEIKIFDIIIPKKNKYGIEGYSRLERLKIFKKN--ILPEEILLTGH 117

Query: 127 TFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             +D  E +++  +R   + G+ G+SGM     YD N+ I RP +  ++E+I  +  ++ 
Sbjct: 118 NMNDLCENIFLSLKR---KSGINGISGMNFYSKYD-NIKIIRPLINIKKENILFWAKKKK 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYL 242
           I W ED SN +++++    R F+R+  L  +YLK   F    +K  N +     ++  +L
Sbjct: 174 IKWIEDQSNKNNQYD----RNFIRNKILSKIYLKWPYFLKNSIKSINLLKKDKKILNYFL 229

Query: 243 TVHMRSIIAISQ--DILNIDSTLL---FYLLRVSAAICGGQISLPGYRSMERV 290
           +  ++  I + +   ++N D+ +L   F +L++       QI +P Y  ++R+
Sbjct: 230 SKFLKKNIYLDKTLSLINFDNLILEAKFSILKMWLY-NNSQI-IPTYYIIKRI 280


>gi|169351463|ref|ZP_02868401.1| hypothetical protein CLOSPI_02243 [Clostridium spiroforme DSM 1552]
 gi|169291685|gb|EDS73818.1| hypothetical protein CLOSPI_02243 [Clostridium spiroforme DSM 1552]
          Length = 414

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 18/193 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V VSGG DSM LL     ++  + +   +     V++ LR  +  + + V D C    I
Sbjct: 15  VVGVSGGCDSMALL----DIMQKKGY---RMVVCHVNYHLRNDSDLDQKTVEDYCKMHDI 67

Query: 83  AHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           A   V   +SK   +      ARE RY    E A   N   ++ AH  DD +E + M+ Q
Sbjct: 68  A-CFVKEIDSKLYSKENFQMQARELRYQFYREIANKYNTNEVVLAHHLDDVIENIVMQLQ 126

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R+  +  +G+  + D       + + RPFL  R++ +R++    N+ + +D +N    FE
Sbjct: 127 RNNTKGYLGIKDVSDV----FGVVVIRPFLEVRKQALRNYCHDYNVFYRDDYTN----FE 178

Query: 201 RVRVRRFVRDIDL 213
               R FVR++ L
Sbjct: 179 TDFTRDFVRNVTL 191


>gi|150025676|ref|YP_001296502.1| tRNA(Ile)-lysidine synthase [Flavobacterium psychrophilum JIP02/86]
 gi|149772217|emb|CAL43693.1| tRNA(Ile)-lysidine synthase [Flavobacterium psychrophilum JIP02/86]
          Length = 434

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 31/196 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           +L+A SGG DSM   + LH       F K+ ++ I++ HC   LR  E+  D+ ++V + 
Sbjct: 21  LLLATSGGIDSM---VMLHL------FQKLNYN-IAIAHCNFQLRGLESFGDQ-QFVQEY 69

Query: 77  CSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            S+ +I   V  +      K+ K  T +  AARE RY    E  +T N   I+TAH  DD
Sbjct: 70  ASKNKIPAFVTHFDTENFAKDYKLSTQI--AARELRYNWFYELLETENFDFILTAHHADD 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET  +   R     G GL G+  T + + N  I RP L   R +I  +  + +I W E
Sbjct: 128 NLETFIINLTR-----GTGLDGL--TGIPEQNEQIIRPLLPFSRSEIEEYTKENSIQWRE 180

Query: 191 DPSNTDDRFERVRVRR 206
           D SN  D++ R ++R 
Sbjct: 181 DSSNASDKYLRNKIRH 196


>gi|126663890|ref|ZP_01734885.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium BAL38]
 gi|126624154|gb|EAZ94847.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium BAL38]
          Length = 219

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 25/191 (13%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDVCS- 78
           +AVSGG DSM LL           F   +FS   V HC   LR E +  ++R++ D C  
Sbjct: 23  IAVSGGIDSMVLL---------HLFQHFQFS-FGVLHCNFKLRGEESDADMRFIHDYCEE 72

Query: 79  ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              +LRI          + +  +   AR+ RY    E  +  +   + TAH  DD LET 
Sbjct: 73  NNIQLRIGFFETEMIAKELKESIQVTARKLRYNWFYEQMEENDVQFVATAHHLDDSLETF 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G G+ G+  T + ++N  I RP L   RE+I  +    NI W ED SN 
Sbjct: 133 LINLSR-----GTGIDGL--TGIPEINDQIIRPLLPFSREEIEQYAKVNNIQWREDASNA 185

Query: 196 DDRFERVRVRR 206
             ++ R ++R 
Sbjct: 186 TTKYLRNKLRH 196


>gi|187735920|ref|YP_001878032.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425972|gb|ACD05251.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 334

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 20/194 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----VRYVSDV- 76
           +L  +SGG DSM LL    S+LS          A  V+H LR  A++E    +RY + + 
Sbjct: 21  VLAGISGGRDSMALL----SLLS--GMPGCNLVACHVNHQLRPEAEEEEMFVLRYAASLG 74

Query: 77  --CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C R R+  +V S  +++    +  AAREAR A   + A      L+  AH  +DQ ET
Sbjct: 75  IPCVRERV--NVRSMAHTR-GIAIEEAAREARQASFLKWAAGYPGALVALAHHRNDQQET 131

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R  +    G+ GM     +   L + RP L   REDI S+L  R+I W ED SN
Sbjct: 132 ALLHLCRGAS----GIHGMFPVSTWANGLTVVRPMLDFSREDITSYLEHRHIPWREDSSN 187

Query: 195 TDDRFERVRVRRFV 208
               + R  +R  +
Sbjct: 188 QSAEYTRNALRHEI 201


>gi|204927320|ref|ZP_03218522.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323985|gb|EDZ09180.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 430

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPHVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + +   + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVHHGLCWIEDESNQDDAYDR 188


>gi|163791058|ref|ZP_02185479.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7]
 gi|159873703|gb|EDP67786.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7]
          Length = 471

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 9/186 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  +  +       +  F  + V+H LRE + +E +++ D C    
Sbjct: 23  LLLAVSGGVDSMVLLDLIQRL---PKVVRPWFGMVHVNHQLREASIEEEKFLVDYCKSAN 79

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I+     W    +P  G+ AAARE RYA      +   AT ++T H  DDQ+ET+ MR  
Sbjct: 80  ISFFFKRWPVKEQPTDGVEAAAREFRYAFFRNVLRDQQATHLLTGHHGDDQIETILMRLV 139

Query: 141 RDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R    +   ++G+ +    Y   L  +RP L   ++ +  +  +R++ + ED +N    +
Sbjct: 140 R--GGQLESIAGIKEQRSFYGSQL--TRPLLPYSKKMLYHYSQERSLVFFEDETNKSLDY 195

Query: 200 ERVRVR 205
            R R R
Sbjct: 196 TRNRYR 201


>gi|148654498|ref|YP_001274703.1| hypoxanthine phosphoribosyltransferase [Roseiflexus sp. RS-1]
 gi|148566608|gb|ABQ88753.1| hypoxanthine phosphoribosyltransferase [Roseiflexus sp. RS-1]
          Length = 682

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 37/232 (15%)

Query: 7   ESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +SVR  +R   ++ P   ++VAVSGG DS+ LL  L ++ ++          + +DH LR
Sbjct: 6   DSVRATIRRYRMIAPGKPVVVAVSGGPDSLCLLDVLANLCAEL---MCTLHVVHLDHRLR 62

Query: 64  ET-AKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
              +  E  +V++   RL IA +V    V     +    L AA R ARY L++  A TI 
Sbjct: 63  GAQSAAEAAFVAETAERLGIAATVEAVDVRALAVERNLNLHAAGRLARYRLLARVALTIG 122

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-------------- 164
           A  + TAH  DDQ ETV +   R    +G  L G+   + +    W              
Sbjct: 123 AQAVATAHHADDQAETVLLHLVRGAGVEG--LRGIRPVVAW--GEWRVIGDMDDDDLAAL 178

Query: 165 --------ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
                   + RP L   R DI ++ ++  +    DPSN D R+ R R+R+ V
Sbjct: 179 PKDEHAPRLIRPLLHVARADIETYCVEHGLVPRRDPSNVDRRYLRTRIRQDV 230


>gi|50542994|ref|XP_499663.1| YALI0A01760p [Yarrowia lipolytica]
 gi|49645528|emb|CAG83586.1| YALI0A01760p [Yarrowia lipolytica]
          Length = 426

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 33/209 (15%)

Query: 22  ILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + +AVSGGSDSM L  +I+    LS+++      +A +VDH +R  +  E + V ++ SR
Sbjct: 12  LALAVSGGSDSMALAYMISQTPGLSEKT------TAYTVDHGVRSESSSEAQNVHEIVSR 65

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L I H ++          L  + R+ARY+ +         + ++TAHT DD +ET  +R 
Sbjct: 66  LGINHRILKLDALNDTKEL--SMRQARYSKLIAAMNDDGVSTVVTAHTQDDCIETFVVRM 123

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLW--------------------ISRPFLRCRREDIRS 179
            R       GL+G+   + ++   W                    + RP L   +  +R+
Sbjct: 124 LRGSGL--FGLAGIQPRVSFNPYTWGGGGIALKQHSRTELASGWKLMRPLLGLTKSHLRN 181

Query: 180 FLLQRNISWCEDPSNTD-DRFERVRVRRF 207
            L++ NI W EDP+N + +  ER  VR+ 
Sbjct: 182 VLVKNNIPWFEDPTNQNVEIAERNLVRKM 210


>gi|220930904|ref|YP_002507812.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168]
 gi|219992214|gb|ACL68817.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168]
          Length = 468

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 22/197 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV VSGG DS+ LL  L  V  +  +G +K     +DH  R+ A  E RYVS++ +   
Sbjct: 23  VLVGVSGGPDSLTLLDMLVRVKDE--YG-LKLVVFHLDHKFRQEAAREARYVSNITNNYG 79

Query: 82  IAHSVVSWKNSKPQTGLM--------AAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +   +  +       GLM         AAR+ R+ L+ +   ++N   I  AH  DD +E
Sbjct: 80  LKCIIEEFD----VPGLMNDEGLSPEEAARKVRFNLMIKWVNSLNLNKIAVAHNKDDLVE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           TV++   R     G GL G+   D +     + +  P L   R++I  +  +RN++   D
Sbjct: 136 TVFLHMFR-----GTGLKGLTGIDPVSRIGGVEVIHPLLNIYRQEIMDYCQRRNLNPVYD 190

Query: 192 PSNTDDRFERVRVRRFV 208
           P+N +  + R ++R  +
Sbjct: 191 PTNQETIYTRNKIRHHI 207


>gi|239621577|ref|ZP_04664608.1| hypoxanthine phosphoribosyltransferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515452|gb|EEQ55319.1| hypoxanthine phosphoribosyltransferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 388

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 13/179 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +  S G ++  A+ VDH L+E ++      ++ C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQEGSEQVAGEAANRCRALG 102

Query: 82  IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +   +V  +N+  Q    GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV + 
Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R    +G+  L+GM   +     +  +RP L   R++         + + +DP+N D
Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGVTFARPLLTLTRDETTGLCEDLGVEYWDDPTNGD 215


>gi|152973911|ref|YP_001373428.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152022663|gb|ABS20433.1| tRNA(Ile)-lysidine synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 476

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 13/206 (6%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66
           RF  +  V   H  I+V VSGG DS+ LL  L   L  R    +      VDH  R + +
Sbjct: 11  RFAKQHGVLEEHSTIVVGVSGGPDSLALLYYL---LEKREAKNLTIVVAHVDHMFRGDES 67

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK--NSKPQTGLMA--AAREARYALISEHAKTINATLI 122
            +++++V ++C  L I    +       + Q G+ A  AARE RYA +    +  +A  +
Sbjct: 68  YEDLQFVENLCHELGILCETIRINVLQYQQQHGMNAQVAARECRYAFLERIMRKYDAGYV 127

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
              H  DDQ+ET+ MR  R       G +G+     +  N ++ RP L   +E+I  +  
Sbjct: 128 ALGHHGDDQVETILMRLVR--GSTPQGYAGIAVKRPFH-NGYLIRPLLAVTKEEILDYCD 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208
           Q  I    D SN  + + R R+R++V
Sbjct: 185 QLGIMPRIDSSNKKEVYTRNRLRKYV 210


>gi|218688063|ref|YP_002396275.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ED1a]
 gi|331681573|ref|ZP_08382210.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H299]
 gi|218425627|emb|CAR06413.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ED1a]
 gi|315300660|gb|EFU59887.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 16-3]
 gi|331081794|gb|EGI52955.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H299]
          Length = 437

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|291528701|emb|CBK94287.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Eubacterium rectale
           M104/1]
          Length = 501

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 150/328 (45%), Gaps = 60/328 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78
           +LVA+SGG+DS+ LL+ L+ +   +   ++ F+  A+ V+H +R   ++++ R+ SD+C 
Sbjct: 21  VLVALSGGADSVCLLLVLNEI-KRQCTDELDFALEAVHVEHGIRGAESREDARFASDLCE 79

Query: 79  RLRI---AHSV-VSWKNSKPQTGLMAAAREARYALISEHA-------------KTINA-- 119
           RL I    HSV V    +    GL  AAR  RY    E A             K  N+  
Sbjct: 80  RLNIPCHVHSVDVPQYAASHGLGLEEAARILRYEAFEEEAGRYPCETAYAADQKQGNSRQ 139

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            ++  AH  +D  ETV  +  R    KG  L+GM    + +   +I RP L   R  I  
Sbjct: 140 AVVAVAHHMEDNAETVLFQMLRGSGAKG--LAGMHPVSVKNGVTYI-RPLLSATRAQIEE 196

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR------------RFVRDIDLHALYLK-MKKFQDL 226
           +L +   ++  D +NTD  + R ++R            R +  I+  A  L  M  F + 
Sbjct: 197 YLKENGQAFVTDATNTDTAYSRNKLRHDVFPLLLQINDRAIEHINESAGQLAVMNDFYEQ 256

Query: 227 RVKV---------NNAVAMLIPKYLTVH--MRSIIA------ISQDILNIDSTLLFYLLR 269
           ++K             V + I ++ ++H  ++S +A       S  + +I ST +  L++
Sbjct: 257 QLKEACDSMVSKKEGRVILEISRFESLHPALKSGVARECIHLASGRLKDITSTHIGALVK 316

Query: 270 VSAAICGGQISLP----GYRSMERVMLF 293
           ++    G +I+LP      +S   V+LF
Sbjct: 317 LAGQQSGRKINLPYGIIAEKSFGEVILF 344


>gi|317482117|ref|ZP_07941141.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|291516361|emb|CBK69977.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Bifidobacterium
           longum subsp. longum F8]
 gi|316916476|gb|EFV37874.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 388

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 13/179 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +  S G ++   + VDH L+E ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGVVIVDHGLQEGSEQVAGEAADRCRALG 102

Query: 82  IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +   +V  +N+  Q    GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV + 
Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R    +G+  L+GM   +     +  +RP L   R++         + + +DP+N D
Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGVTFARPLLTLTRDETTGLCEDLGVEYWDDPTNGD 215


>gi|168823094|ref|ZP_02835094.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205340604|gb|EDZ27368.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320084490|emb|CBY94283.1| cell cycle protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 430

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC+R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCARWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|323975644|gb|EGB70740.1| PP-loop family protein [Escherichia coli TW10509]
          Length = 431

 Score = 76.6 bits (187), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLISRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|303231002|ref|ZP_07317745.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514384|gb|EFL56383.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-049-V-Sch6]
          Length = 320

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 10/194 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +LVA SGG DSM LL  L  +   R   +      ++DH +R  +  E++ V   C++
Sbjct: 16  ARVLVACSGGPDSMVLLDVLQYIKVHRK-AQWTIGVTTMDHSIRRESPSELQMVQSYCNK 74

Query: 80  LR-----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                  I   + +    + ++ L    R  RY   +E A+  +   I+TAH  DDQ ET
Sbjct: 75  RNLPFWGIKKDIPTIARERKES-LETVGRCERYKWFNELAEREHYEYIVTAHHKDDQGET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +     R    KG  ++GM   I +D  + I RP L   +++I  +   ++I +C D SN
Sbjct: 134 ILAHILRGSGIKG--ITGM-SVISHDYAVPIVRPLLAVTKDEILEYARLQDIEYCLDASN 190

Query: 195 TDDRFERVRVRRFV 208
            D ++ R R+R  V
Sbjct: 191 EDVKYNRNRIRHDV 204


>gi|324008219|gb|EGB77438.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 57-2]
          Length = 432

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTPLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|237729494|ref|ZP_04559975.1| tRNA(Ile)-lysidine synthetase [Citrobacter sp. 30_2]
 gi|226909223|gb|EEH95141.1| tRNA(Ile)-lysidine synthetase [Citrobacter sp. 30_2]
          Length = 431

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 132/314 (42%), Gaps = 28/314 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRS-FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ILVA SGG DS    + LH ++  R+   ++   AI + H L   A   V++   VC + 
Sbjct: 16  ILVAFSGGLDST---VLLHQLVQWRAQHPEVALRAIHIHHGLSPHADSWVQHCESVCMQW 72

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++   V          G+ A AR ARY   ++    +   ++MTA   DDQ ET  +  +
Sbjct: 73  QVPLVVERVHLEDDGLGIEAQARRARYQAFAQ--TLLPGEVLMTAQHLDDQCETFLLALK 130

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G  LS M +   +     I RP L   RE + ++  Q  + W ED SN DD ++
Sbjct: 131 RGSGPAG--LSAMGENTPFAGTQLI-RPLLAQTREVLETWARQHELCWIEDESNQDDTYD 187

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQ 254
               R F+R   L    L  +++      V  + A+      L+ + LT  +   I    
Sbjct: 188 ----RNFLR---LRVTPLLQQRWPHFAQAVARSAALCAEQESLLDELLTSDLADCITAHG 240

Query: 255 DILNIDSTLLFYLLRVSA---AICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308
            +L +   ++  + R +     + G    +P    +ER+   +   +     C  +G   
Sbjct: 241 TLLLVPLMMMSDVRRAALLRRWLAGLNAPMPSRDGLERIWQEVALAREDASPCFRLGEYE 300

Query: 309 IDRRANFLWITRAV 322
           + R  + LW  ++V
Sbjct: 301 VRRYQSQLWWVKSV 314


>gi|330836936|ref|YP_004411577.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374]
 gi|329748839|gb|AEC02195.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374]
          Length = 499

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 93/204 (45%), Gaps = 21/204 (10%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKD 68
           F  RS      I+VA SGG+DS  LL  L  ++   S       A+ V+H LR  E    
Sbjct: 41  FSSRSWNPREGIVVAFSGGADSSALLYLLSRLVPASSL-----VAVYVNHRLRPAEELAG 95

Query: 69  EVRYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           E+ + +  C++L I          V+S + ++   G+ AAAR  RY ++      +    
Sbjct: 96  EIAHNTCFCAKLGIEIKIVDSGEDVISNRAAQEGDGIEAAARAVRYEILEAERARLGFPW 155

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I T HT DDQ+ET+  R  R       G S      +  +N  + RP L      +RS L
Sbjct: 156 IATGHTSDDQMETILHRLLR-------GCSVAALRGIEPVNGSVIRPLLDVSGTVLRSLL 208

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
             + +SW ED +N  D + R R+R
Sbjct: 209 KDKGLSWSEDSTNAMDDYTRNRIR 232


>gi|300902007|ref|ZP_07120034.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 84-1]
 gi|301305324|ref|ZP_07211420.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 124-1]
 gi|300405893|gb|EFJ89431.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 84-1]
 gi|300839429|gb|EFK67189.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 124-1]
 gi|315254990|gb|EFU34958.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 85-1]
          Length = 432

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLTLRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|167629385|ref|YP_001679884.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
 gi|167592125|gb|ABZ83873.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
          Length = 463

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 88/202 (43%), Gaps = 17/202 (8%)

Query: 10  RFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           R     L+ P   +L+AVSGG DS+ LL+  H          +K S    +H LR  A D
Sbjct: 8   RLHRHRLIEPQQRVLIAVSGGIDSVSLLLLFHQAAPQMD---LKLSVAHYNHGLRGEAAD 64

Query: 69  EVR-YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           E   +V+ +  RL +      +   W   +P T  M AAR  RY  +   AK   A  I 
Sbjct: 65  EDEAFVAALAGRLGLPCYRERAPQGWWTREPGTK-MEAARRLRYDFLERVAKAAGADRIA 123

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DDQ+ETV     R     G GL G+    +     +I RP L  RR ++ +FL  
Sbjct: 124 LGHHADDQVETVLFHFLR-----GSGLRGLAGMPIRR-GPYI-RPLLAFRRAELAAFLQA 176

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
               W  D SN    + R R+R
Sbjct: 177 ERQEWRHDASNDSTLYTRNRIR 198


>gi|90407914|ref|ZP_01216089.1| mesJ protein [Psychromonas sp. CNPT3]
 gi|90311005|gb|EAS39115.1| mesJ protein [Psychromonas sp. CNPT3]
          Length = 441

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 18/189 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS+ LL     + S    GK+   A  V H L   A D + + S +C  L + 
Sbjct: 26  IALSGGMDSVVLL----HLFSRLHNGKVM--AHHVHHGLSAHADDWLLFCSTLCKALNVD 79

Query: 84  HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                   + K ++ L A ARE RY  + E+A     T ++TAH  DDQLE++ +  +R 
Sbjct: 80  FCATRVHLDKKNRSSLEAVAREHRYKALQENASV--TTCLVTAHHQDDQLESILLALKR- 136

Query: 143 YAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               G GL+G+   +L    L    + RP L   R+ I  +    +++W ED SN D RF
Sbjct: 137 ----GAGLTGL-QGVLATQKLPKGMLIRPLLDVSRQQIEDYAALFSLAWIEDESNQDQRF 191

Query: 200 ERVRVRRFV 208
           +R  +R  +
Sbjct: 192 DRNFIRHSI 200


>gi|253681327|ref|ZP_04862125.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873]
 gi|253562565|gb|EES92016.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873]
          Length = 462

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++VAVSGG DS+ LL  L+ +   R    I   A  ++HCLR  E  KDE  YV   C  
Sbjct: 21  VVVAVSGGPDSICLLHILYKL---REKIGISIVAAHINHCLRGEEADKDE-EYVRKFCEN 76

Query: 80  LRIAHSVVS---WKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I   V      K SK +      A RE RY   SE    + A  I  AH  +DQ ET+
Sbjct: 77  LNIQCFVKKEDVHKISKDRGISCEMAGREVRYDFFSEVLNNVRANKIAVAHNANDQAETI 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        N+++ RP +   R++I  +    N++   D +N 
Sbjct: 137 LMRMLR-----GTGLEGLIGIRAVRDNIFV-RPIIDITRDEIEDYCYVNNLNPRIDKTNL 190

Query: 196 DDRFERVRVR 205
           ++ + R ++R
Sbjct: 191 ENIYTRNKIR 200


>gi|168235017|ref|ZP_02660075.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738177|ref|YP_002113259.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|254789047|sp|B4TYE9|TILS_SALSV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|194713679|gb|ACF92900.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197291746|gb|EDY31096.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 430

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVKRVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + +   + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVHHGLCWIEDESNQDDAYDR 188


>gi|196250781|ref|ZP_03149468.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16]
 gi|196209731|gb|EDY04503.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16]
          Length = 464

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 14/211 (6%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR F+   R L   A ++V VSGG DS+     LH + S R   K++  A  VDH  
Sbjct: 2   VDKVRAFIDRHRLLTEGATVIVGVSGGPDSL---ALLHLLSSLRDEWKLQLVAAHVDHMF 58

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMA--AAREARYALISEHAKTI 117
           R   +++E+ +V   C+  RI    V       Q  TGL A  AAR  RY   +E  K  
Sbjct: 59  RGRESEEEMEFVKHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKY 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    K  G +G+     +  +  I RPFL   R +I
Sbjct: 119 QAQYVALGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGSYLI-RPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  ++   DPSN  D + R R R  +
Sbjct: 176 EDYCKKEGLTPRRDPSNEKDDYTRNRFRHHI 206


>gi|152995318|ref|YP_001340153.1| tRNA(Ile)-lysidine synthetase [Marinomonas sp. MWYL1]
 gi|150836242|gb|ABR70218.1| tRNA(Ile)-lysidine synthetase [Marinomonas sp. MWYL1]
          Length = 436

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 84/186 (45%), Gaps = 8/186 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V  SGG DS  LL AL + ++     K K   + V H L   A D + +   +C+ L 
Sbjct: 33  VWVGFSGGVDSHVLLHALVNQITLAQ--KQKLFVLHVHHGLSANADDWLLHCETICNNLG 90

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +          + Q  +  AAR ARY      A      +I+ AH   DQ ET+  R  R
Sbjct: 91  VTFKAEK-VQLESQASIEDAARNARYQAF--QANMGEGDVILLAHHAGDQAETLLFRLLR 147

Query: 142 DYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                G GLSGM +   L +    + RP L   ++DI  + +Q  + W  D SN D+RF 
Sbjct: 148 --GTGGKGLSGMPNERWLANGKARLIRPLLSVSKQDIEGYAIQHKLDWIHDESNFDERFT 205

Query: 201 RVRVRR 206
           R  +RR
Sbjct: 206 RNFLRR 211


>gi|9294051|dbj|BAB02008.1| unnamed protein product [Arabidopsis thaliana]
          Length = 614

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 25/212 (11%)

Query: 24  VAVSGGSDSMGLLI--------ALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVS 74
           + VSGG DSM L +         L  V  +++ G I    AI VDH LR+ +KDE   V 
Sbjct: 59  LGVSGGPDSMALCVLTAKWKTEGLSCV--NKTDGFIDGLVAIVVDHGLRQESKDEAELVC 116

Query: 75  DVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              S++ I   + S  W + +P+ G L  AARE RY +IS         +++ AH  DDQ
Sbjct: 117 SRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHADDQ 176

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIRSF 180
            E   +R  R     G+  +     I           + + ++ + RP L   +ED+   
Sbjct: 177 AELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYKI 236

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                  W EDP+N    F R R+R  + +++
Sbjct: 237 CQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLE 268


>gi|83592433|ref|YP_426185.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170]
 gi|83575347|gb|ABC21898.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170]
          Length = 462

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 76/179 (42%), Gaps = 6/179 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DS+ LL       ++R     + +A+  DH LR  +  E R V      L 
Sbjct: 34  IAVGVSGGVDSLTLLAFAARWAAERGG---RCTAVCFDHGLRAASAGEARLVETTARSLG 90

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
               V+ W    P +G+  AAR AR   +           ++ AH  DDQ ETV  R  R
Sbjct: 91  AEAVVLRWAGPPPSSGVQEAARRARLDGLLGWCAGAGVLHLLLAHHRDDQAETVLQRLGR 150

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                G  L+ M   +       I RPFL   R  I +   +  + W EDPSN D  ++
Sbjct: 151 GSGADG--LAAMA-ALSSRGEARILRPFLEVPRAAIEASARRIGLVWAEDPSNHDPHYD 206


>gi|209745668|gb|ACI71141.1| cell cycle protein MesJ [Escherichia coli]
 gi|326345091|gb|EGD68834.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 431

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 7/188 (3%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++   G ++  AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGALR--AIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFER 201
           N DD ++R
Sbjct: 180 NQDDSYDR 187


>gi|71281989|ref|YP_268314.1| tRNA(Ile)-lysidine synthetase [Colwellia psychrerythraea 34H]
 gi|71147729|gb|AAZ28202.1| tRNA(Ile)-lysidine synthetase [Colwellia psychrerythraea 34H]
          Length = 462

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 11/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL AL  +  ++     + +   V+H L   A+   +     C +L 
Sbjct: 24  LIVAYSGGIDSQVLLHALVQLKQNKIINN-EITVCHVNHGLSGNAERWQKLAEQECIKLS 82

Query: 82  IAHSVVSWKN--SKPQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           + + +V   N  SK Q  L A AR+ARY AL S   K    ++++T H  DDQ ET  + 
Sbjct: 83  V-NLIVKRVNVRSKAQQSLEALARDARYNALKSLREK---KSVVLTGHHSDDQSETFLLA 138

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    KG  LS M      D +L + RP L   R++I ++     +SW ED SN D  
Sbjct: 139 LKRGAGLKG--LSAMSVQTQLDQHLLV-RPLLNVARQEIENYAENHQLSWVEDESNLDTC 195

Query: 199 FERVRVRR 206
           F+R  +R+
Sbjct: 196 FDRNFIRQ 203


>gi|16759227|ref|NP_454844.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140776|ref|NP_804118.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161205|ref|ZP_03346915.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213416904|ref|ZP_03350048.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213428146|ref|ZP_03360896.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213612494|ref|ZP_03370320.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213646227|ref|ZP_03376280.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|61216696|sp|Q8Z996|TILS_SALTI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|25325274|pir||AG0531 cell cycle protein MesJ [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16501518|emb|CAD08695.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136400|gb|AAO67967.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|33356621|gb|AAQ16558.1| putative cell cycle protein [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 430

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|58582920|ref|YP_201936.1| cell cycle protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427514|gb|AAW76551.1| cell cycle protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 434

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 138/345 (40%), Gaps = 39/345 (11%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    
Sbjct: 12  IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68

Query: 77  CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT-AHTFDDQLET 134
           C  L++   +V  +  +    GL AAAR AR+      A T+ A   +T AH  DDQ ET
Sbjct: 69  CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAF---AHTLAAGEWLTLAHHRDDQAET 125

Query: 135 VYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
             +R+ R  A    GL+ M       D  LW  RP L   R D+ ++ L + + W EDPS
Sbjct: 126 FLLRALR--ASGPEGLAAMRPQRPFADGTLW--RPLLAHSRADLLAYALAQEVRWIEDPS 181

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D R +    R F+R   L  L  +  +  D   +     A L      + ++  +A+ 
Sbjct: 182 NADPRHD----RNFLRSQVLPLLQQRWPQAADALAR----SAQLSADASALLLQQDMALL 233

Query: 254 QDILNIDSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +      L  + LR               +A     +   G  ++ER +    + ++ 
Sbjct: 234 PSVRTASGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQA 293

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
           C +  +V + R    L++ R     PT     +    WDG    Q
Sbjct: 294 CFAWQQVEVRRWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQ 333


>gi|322616060|gb|EFY12977.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620843|gb|EFY17703.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623806|gb|EFY20643.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627254|gb|EFY24045.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630561|gb|EFY27325.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638221|gb|EFY34922.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640706|gb|EFY37357.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645510|gb|EFY42037.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648197|gb|EFY44664.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322657147|gb|EFY53430.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657517|gb|EFY53789.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663837|gb|EFY60037.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666670|gb|EFY62848.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672172|gb|EFY68284.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676517|gb|EFY72588.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679391|gb|EFY75436.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686282|gb|EFY82266.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323193462|gb|EFZ78670.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197516|gb|EFZ82651.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201215|gb|EFZ86284.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209610|gb|EFZ94543.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212138|gb|EFZ96962.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216443|gb|EGA01169.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223367|gb|EGA07702.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225928|gb|EGA10148.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228531|gb|EGA12660.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236856|gb|EGA20932.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239644|gb|EGA23691.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242309|gb|EGA26338.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249971|gb|EGA33867.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252401|gb|EGA36252.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255684|gb|EGA39437.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262879|gb|EGA46429.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265365|gb|EGA48861.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271848|gb|EGA55266.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 430

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|33151295|ref|NP_872648.1| cell-cycle protein MesJ [Haemophilus ducreyi 35000HP]
 gi|61216603|sp|Q7VPN7|TILS_HAEDU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33147515|gb|AAP95037.1| probable cell-cycle protein MesJ [Haemophilus ducreyi 35000HP]
          Length = 428

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 102/206 (49%), Gaps = 17/206 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++L+++SGG DS+ LL      L  R+   ++  AI + H L   A +   +   +C + 
Sbjct: 19  NVLLSLSGGIDSVVLL-----DLFSRTTTPLR--AIYIHHGLSANADNWADFCEALCKQY 71

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   ++        TG+ A AR ARY  I+EH +     ++ TAH  +DQ ET  +  +
Sbjct: 72  NIPF-ILQKVTVDKSTGIEAGARTARYKAIAEHIQA--NEILATAHHLNDQAETFLLALK 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M   + +  N+ I RP L   +++I+ +  Q+ + W ED SN ++ ++
Sbjct: 129 RGSGVKG--LSAM-QIVSHRQNMTIFRPLLSTTKKEIQQYAKQQQLCWIEDESNQNNHYD 185

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDL 226
               R F+R+  L  L  +  +F  +
Sbjct: 186 ----RNFLRNQILPLLLQRWPQFNQM 207


>gi|289830090|ref|ZP_06547530.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 431

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 17  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 74

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 75  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 132

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 133 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 189


>gi|168464199|ref|ZP_02698102.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195632620|gb|EDX51074.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 430

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|294085869|ref|YP_003552629.1| putative ATPase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665444|gb|ADE40545.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 444

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 11/186 (5%)

Query: 25  AVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           A+SGG+DS  L  L++  +V S ++       AI VDH +RE A  E   V+    +  I
Sbjct: 34  ALSGGADSTALCLLMSRFAVASGKAH-----RAIIVDHGIRENAGAEAARVAARMQKFGI 88

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +    +  P+TG+ A AR  R+ ++  HA+  NA L++  H   DQ ET+ MR  +D
Sbjct: 89  NVKIEKVSDKAPETGIQAWARRQRFEIMLAHARRDNAALLV-GHHAGDQAETIAMRLGKD 147

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                +GL+GM  T  +   + I RP L    + +          + +DPSN D RFER+
Sbjct: 148 SGL--VGLAGMKRTS-WRAGVPIGRPLLDWPADRMADICRIFACEFEDDPSNLDRRFERI 204

Query: 203 RVRRFV 208
           R+R+F+
Sbjct: 205 RLRQFM 210


>gi|313113474|ref|ZP_07799063.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624201|gb|EFQ07567.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 485

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 93/196 (47%), Gaps = 20/196 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
           P H+  AVSGG+DSM LL  L ++  +  FG +  SA  V+H LR ETA  +  +V   C
Sbjct: 25  PLHLAAAVSGGADSMALLRILLALQPE--FGFV-LSACHVNHGLRGETADRDEAFVRAEC 81

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISE-HAKTINATLIMTAHTFDD 130
           +RL +   V        + GL         AR  RYA  +    + I+   + TAHT +D
Sbjct: 82  ARLGVPLRVFHAAEMADEVGLPPEHAGEDWARRLRYACFARLCGEGIDD--VATAHTAND 139

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET+ +R  R     G GL G    I      ++ RP L   R+D  SF      +W  
Sbjct: 140 QAETLLLRLAR-----GTGLHGAAG-IRPKRGCYL-RPLLALTRQDTESFCRAAGQAWVT 192

Query: 191 DPSNTDDRFERVRVRR 206
           D +N  D + R RVRR
Sbjct: 193 DETNATDAYARNRVRR 208


>gi|200387429|ref|ZP_03214041.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604527|gb|EDZ03072.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 430

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|121593999|ref|YP_985895.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42]
 gi|120606079|gb|ABM41819.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42]
          Length = 335

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 103/213 (48%), Gaps = 26/213 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA+SGG+DS  LL+A     + R  G++   A  V H L+  A    ++   +C RL 
Sbjct: 18  LAVALSGGADSTALLLAC----AARWPGQV--VAFHVHHGLQAAADGFEQHCVALCERLG 71

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISE-----HAKTINATLIMTAHTFDDQLET 134
           I   V  V  +++  Q+    AAR+ARY           A+    T+ +  H  DDQ+ET
Sbjct: 72  IPLWVRRVDARHAAGQSP-EDAARQARYKAFEALALDCQAQAAIKTIALAQHA-DDQVET 129

Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           + +   R     G G++G+           +   RP LR    D+R++L+ R   W EDP
Sbjct: 130 LLLALSR-----GAGVAGLAAMPAQWQRAGMDWCRPLLRVAGADVRAWLVARGERWVEDP 184

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
           +N D+RF R R+RR +    L AL     +F+D
Sbjct: 185 TNADERFTRNRIRRQL----LPALQQAFPQFRD 213


>gi|32034944|ref|ZP_00135035.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209005|ref|YP_001054230.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae L20]
 gi|303250988|ref|ZP_07337176.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253197|ref|ZP_07535073.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|226695530|sp|A3N2I9|TILS_ACTP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|126097797|gb|ABN74625.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302650145|gb|EFL80313.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859341|gb|EFM91378.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 419

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 170/401 (42%), Gaps = 37/401 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + ++ +SGG DS+ LL  L  +  +         A+ + H L   A +   +   VC RL
Sbjct: 19  NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADNWAAFCEQVCKRL 71

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AR ARY  I E  +  N  L+ TAH  DDQ ET  +  +
Sbjct: 72  KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M   + +  N  I RP L   +  I  + LQ+  +W ED SN D  ++
Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R+  L  +  + + F  +  +     A   ML+ + L   ++     S+  L
Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241

Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308
           NI++   F       L+R+    CG Q  +P    + +++   ++    K   + +    
Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299

Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           + R  + L++T  +   P     P    +  T+ DG  + Q+L DS+I        +  +
Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSIIYQKSGKIDRLLL 358

Query: 365 PSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404
           P  +     Q  L+     K+ GKP+     +   +  +PV
Sbjct: 359 PKALVNAPLQVKLTHQGKVKQYGKPMREEMKKRYQQAQVPV 399


>gi|288574816|ref|ZP_06393173.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570557|gb|EFC92114.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 455

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 29/220 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I VAVSGGSDSM LL  + +   +        S I V+H +R +++K +  +V + C +L
Sbjct: 27  IAVAVSGGSDSMALLWLMLNCWPN------DISVIHVEHGIRGDSSKADACFVKEHCKKL 80

Query: 81  RIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            I   ++S      +     L  AAR  R+  ++  A+ I +  +   H  DD +ET ++
Sbjct: 81  DIPCFILSRDVPVEAMKGESLEQAARRIRHEALASKAEEIGSDFVALGHNSDDTVETFFL 140

Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              R     G+ G+  + D  +        RP L   R+++R  L +    W ED SN +
Sbjct: 141 NLARGSGAYGLAGIPEVRDRFV--------RPVLEVSRDELRELLKEVGWGWVEDESNQE 192

Query: 197 DRFERVRVR---------RFVRDIDLHALYLKMKKFQDLR 227
           D + R R+R         R  R +  H L L +++  DLR
Sbjct: 193 DLYLRNRIRHEVLPLLENRINRGVRRHVLSL-IEEMSDLR 231


>gi|194435002|ref|ZP_03067243.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 1012]
 gi|194416738|gb|EDX32866.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 1012]
 gi|320180904|gb|EFW55826.1| tRNA(Ile)-lysidine synthetase [Shigella boydii ATCC 9905]
 gi|332097611|gb|EGJ02588.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 155-74]
          Length = 432

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLLGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|62178806|ref|YP_215223.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75484785|sp|Q57T19|TILS_SALCH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|62126439|gb|AAX64142.1| cell cycle protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713260|gb|EFZ04831.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 430

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|138893739|ref|YP_001124192.1| cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2]
 gi|134265252|gb|ABO65447.1| Cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2]
          Length = 464

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 14/211 (6%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR F+   R L   A ++V VSGG DS+     LH + S R   K++  A  VDH  
Sbjct: 2   VDKVRAFIDRHRLLTEGATVIVGVSGGPDSL---ALLHLLSSLRDEWKLQLVAAHVDHMF 58

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMA--AAREARYALISEHAKTI 117
           R   +++E+ +V   C+  RI    V       Q  TGL A  AAR  RY   +E  K  
Sbjct: 59  RGRESEEEMEFVKHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKY 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    K  G +G+     +  +  I RPFL   R +I
Sbjct: 119 QAQYVALGHHGDDQVETILMRLVRGSTSK--GYAGIPVKRPFHGSYLI-RPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  ++   DPSN  D + R R R  +
Sbjct: 176 EDYCKKEGLTPRRDPSNEKDDYTRNRFRHHI 206


>gi|16763626|ref|NP_459241.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990123|ref|ZP_02571223.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168264644|ref|ZP_02686617.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|61216700|sp|Q8ZRN5|TILS_SALTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|16418741|gb|AAL19200.1| cell cycle protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205331423|gb|EDZ18187.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205346914|gb|EDZ33545.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267991927|gb|ACY86812.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|312911206|dbj|BAJ35180.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225169|gb|EFX50229.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323128556|gb|ADX15986.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987188|gb|AEF06171.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 430

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|15799870|ref|NP_285882.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 EDL933]
 gi|15829444|ref|NP_308217.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168752171|ref|ZP_02777193.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4113]
 gi|168758712|ref|ZP_02783719.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4401]
 gi|168764949|ref|ZP_02789956.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4501]
 gi|168769956|ref|ZP_02794963.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4486]
 gi|168777704|ref|ZP_02802711.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4196]
 gi|168782081|ref|ZP_02807088.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4076]
 gi|168789298|ref|ZP_02814305.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC869]
 gi|168802467|ref|ZP_02827474.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC508]
 gi|195939884|ref|ZP_03085266.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806040|ref|ZP_03248377.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4206]
 gi|208812463|ref|ZP_03253792.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4045]
 gi|208818383|ref|ZP_03258703.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4042]
 gi|209399704|ref|YP_002268796.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4115]
 gi|217324422|ref|ZP_03440506.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. TW14588]
 gi|254791321|ref|YP_003076158.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226942|ref|ZP_05941223.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255346|ref|ZP_05947879.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|61216683|sp|Q8X8W8|TILS_ECO57 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|12512916|gb|AAG54490.1|AE005194_11 cell cycle protein [Escherichia coli O157:H7 str. EDL933]
 gi|13359646|dbj|BAB33613.1| cell cycle protein MesJ [Escherichia coli O157:H7 str. Sakai]
 gi|187767122|gb|EDU30966.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4196]
 gi|188013918|gb|EDU52040.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4113]
 gi|189000414|gb|EDU69400.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4076]
 gi|189354503|gb|EDU72922.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4401]
 gi|189361024|gb|EDU79443.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4486]
 gi|189365138|gb|EDU83554.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4501]
 gi|189371100|gb|EDU89516.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC869]
 gi|189375538|gb|EDU93954.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC508]
 gi|208725841|gb|EDZ75442.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4206]
 gi|208733740|gb|EDZ82427.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4045]
 gi|208738506|gb|EDZ86188.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4042]
 gi|209161104|gb|ACI38537.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4115]
 gi|209745666|gb|ACI71140.1| cell cycle protein MesJ [Escherichia coli]
 gi|209745672|gb|ACI71143.1| cell cycle protein MesJ [Escherichia coli]
 gi|217320643|gb|EEC29067.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. TW14588]
 gi|254590721|gb|ACT70082.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           TW14359]
 gi|320190286|gb|EFW64936.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           EC1212]
 gi|326339757|gb|EGD63565.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. 1044]
          Length = 431

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 7/188 (3%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++   G ++  AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGALR--AIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFER 201
           N DD ++R
Sbjct: 180 NQDDSYDR 187


>gi|331268350|ref|YP_004394842.1| cell cycle protein MesJ [Clostridium botulinum BKT015925]
 gi|329124900|gb|AEB74845.1| Cell cycle protein MesJ, putative [Clostridium botulinum BKT015925]
          Length = 467

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++VAVSGG DS+ LL  L+ +  +     I   A  ++HCLR  E  KDE  YV   C  
Sbjct: 26  VVVAVSGGPDSICLLHILYKLKEELG---ITLVAAHINHCLRGEEADKDE-EYVRKFCEN 81

Query: 80  LRIAHSVVS---WKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I   V      K SK +      A RE RY   SE    + A  I  AH  +DQ ET+
Sbjct: 82  LNIECFVKKEDVHKISKDRGISCEMAGREVRYEFFSEVLNKVGANKIAVAHNANDQAETI 141

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        N+++ RP +   R++I ++    N++   D +N 
Sbjct: 142 LMRMLR-----GTGLEGLVGIRAVRDNIFL-RPIIDITRDEIENYCDVNNLNPRIDKTNL 195

Query: 196 DDRFERVRVR 205
           ++ + R ++R
Sbjct: 196 ENIYTRNKIR 205


>gi|197249380|ref|YP_002145241.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|254789042|sp|B5F8V0|TILS_SALA4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|197213083|gb|ACH50480.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 430

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|241758884|ref|ZP_04756997.1| tRNA(Ile)-lysidine synthase [Neisseria flavescens SK114]
 gi|241321092|gb|EER57305.1| tRNA(Ile)-lysidine synthase [Neisseria flavescens SK114]
          Length = 441

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 143/327 (43%), Gaps = 42/327 (12%)

Query: 19  PAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P+H +V V  SGG DS+ LL  LH     R F      A+ V H L   A    ++  D 
Sbjct: 21  PSHTVVEVGLSGGLDSVVLLHLLHRT---REFHHFDLRAVHVHHGLSTNADSWAKFCQDY 77

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C  L +   V      K   GL AAAR ARY   S+  K I    I+ AH  +DQ+ET  
Sbjct: 78  CRGLNVTLRVCRVNVEKQGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILY-DLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           + + R     G GL GM    ++ DLN  + I RP L   R+++  +  Q  +S+ ED S
Sbjct: 134 LSAVR-----GGGLRGMAAMPVWRDLNEEIQIWRPLLAFSRQELAEYAQQWGLSFVEDES 188

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN---------NAVAMLIPKYLTV 244
           N D  +    +R ++R+  L     ++  F+  ++  N             ++  +Y  +
Sbjct: 189 NEDSSY----LRNWMRNQALPKWQQRIPNFEQ-QICTNVRLLQEDLQLLDELIESEYQRI 243

Query: 245 HMRSIIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
               I +IS   Q    +   LL+Y LR          SLP Y S+      L++  +  
Sbjct: 244 SPNGIFSISLWRQCTPLLRRRLLWYFLRKQTE------SLPSYHSIADFARVLETADQAQ 297

Query: 302 VSI--GRVVIDRRANFLWITRAVRNLP 326
           +++  G++V+ R   F+      + LP
Sbjct: 298 LNLPDGKLVVYRDKLFVCQESEFQKLP 324


>gi|227115135|ref|ZP_03828791.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 455

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 8/187 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A SGG DS    + LH +++ R   ++   A  + H L   A     +    C R +
Sbjct: 29  ILLAYSGGLDSS---VLLHLLVALRQRSELPIRAAYIHHGLNPLADSWAEHCRQQCERWQ 85

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  + +S        G+ AAAR ARY  +  H +  +   ++TA   DDQ ET  +  +R
Sbjct: 86  VPFTSLSVTVEAQNGGIEAAARTARYQALRAHLQ--DGETLLTAQHLDDQSETFLLALKR 143

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+       T+ +     + RP L   R  + ++  +  + W ED SN D+RF+R
Sbjct: 144 GSGPAGLSAMAAQSTLGHHR---LVRPLLGISRLQLEAYAQRNQLDWIEDDSNQDERFDR 200

Query: 202 VRVRRFV 208
             +RR +
Sbjct: 201 NFLRRQI 207


>gi|320639994|gb|EFX09579.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. G5101]
          Length = 431

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 7/188 (3%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++   G ++  AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGALR--AIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFER 201
           N DD ++R
Sbjct: 180 NQDDSYDR 187


>gi|297582401|ref|YP_003698181.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10]
 gi|297140858|gb|ADH97615.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10]
          Length = 475

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 20/195 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
           H+LVAVSGG DSM LL  LH     R+   I  SA+   H LR E+A  +   V+  C  
Sbjct: 20  HLLVAVSGGVDSMVLLHLLHE---RRTRLSITLSAVHAHHHLRRESADRDAELVASFCRE 76

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I     H  V  +       + A AR+ RY           A  ++TAH  DDQ+ETV
Sbjct: 77  LAIPFHLVHLSVEEERKLRNGSVQAVARDLRYEAFRHVMTETGANRLVTAHHGDDQIETV 136

Query: 136 YMRSQRDYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ++  R+ A+ G G+  +      T++        RP L   +  +  +     I + ED
Sbjct: 137 LLQLLRNTAQGGSGMRALRPIEGGTLI--------RPLLDTEKASLYRYAKDSGIPFRED 188

Query: 192 PSNTDDRFERVRVRR 206
            SN    + R R+R+
Sbjct: 189 ESNDSRHYRRNRIRQ 203


>gi|330896077|gb|EGH28298.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 286

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +  +AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQTAADGWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     +P   L  AAR+ARY+  SE  + +   +++T    DDQ ET+  R  R  
Sbjct: 88  FESVR-VQVEPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R+ +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPDQRVLGRGH-LLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|288554678|ref|YP_003426613.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4]
 gi|288545838|gb|ADC49721.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4]
          Length = 465

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 24/217 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           + VAVSGG DSM LL   H ++  R    I+  A+ V+H LR  E+  DE +YV   C+ 
Sbjct: 21  VFVAVSGGPDSMALL---HYLIKRREMYGIEVEAVHVNHQLRGAESVDDE-QYVRKFCTE 76

Query: 80  LRIA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I  H+    V    S+ + G   AA E RY    E  +    + I TAH  DDQ ET+
Sbjct: 77  HNIPLHTKKMDVQTFASQNKMGTQKAASELRYQWFDEWLENRPHSCIATAHHGDDQTETI 136

Query: 136 YM---RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            M   R        G+ +  +        N ++ RPFL   +E+I  +  +  I+   D 
Sbjct: 137 LMTMVRGGNLLVPSGINVKRILQ------NGFVIRPFLGITKEEIEHYCKREGITPRIDS 190

Query: 193 SNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQD 225
           SN   ++ R R R+    F++  +  ++++ M++FQ+
Sbjct: 191 SNHSMKYTRNRYRQQIMPFIKSENP-SVHIHMQRFQE 226


>gi|194443631|ref|YP_002039476.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|254789045|sp|B4SV18|TILS_SALNS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|194402294|gb|ACF62516.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 430

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|161612610|ref|YP_001586575.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|254789046|sp|A9N0U0|TILS_SALPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|161361974|gb|ABX65742.1| hypothetical protein SPAB_00301 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 430

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|331645331|ref|ZP_08346442.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           M605]
 gi|281177413|dbj|BAI53743.1| cell cycle protein [Escherichia coli SE15]
 gi|330910038|gb|EGH38548.1| tRNA(Ile)-lysidine synthetase [Escherichia coli AA86]
 gi|331046088|gb|EGI18207.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           M605]
          Length = 437

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  +  Q ++ W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWARQYDLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|254468050|ref|ZP_05081456.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13]
 gi|207086860|gb|EDZ64143.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13]
          Length = 441

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 13/199 (6%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F  + L    H+LV VSGG DS+   +  H++   RS      + I VDH L   +K   
Sbjct: 12  FLKQKLKKNCHLLVGVSGGIDSV---VLGHTLSQLRSLHPFDLTFIYVDHQLHPESKQWA 68

Query: 71  RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             V  +  +L I +       +   + G   AAR+ RY    +H K I   L++  H  D
Sbjct: 69  NTVKQLAKKLSIEYICEKVTIDQDLKLGTEGAARKHRYQAFQKHQKDI---LVLAQHE-D 124

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQLET+ ++  R     G G  G+     Y   L I RP L   +  I  +  +  + + 
Sbjct: 125 DQLETLLLQLAR-----GAGSKGLSCMPEYHEKLKIWRPLLGVSKNLIYRYQQEHKLKFI 179

Query: 190 EDPSNTDDRFERVRVRRFV 208
           ED SN D++++R  +R  V
Sbjct: 180 EDSSNKDNKYDRNYLRNKV 198


>gi|188577760|ref|YP_001914689.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188522212|gb|ACD60157.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 434

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 138/345 (40%), Gaps = 39/345 (11%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    
Sbjct: 12  IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68

Query: 77  CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT-AHTFDDQLET 134
           C  L++   +V  +  +    GL AAAR AR+      A T+ A   +T AH  DDQ ET
Sbjct: 69  CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAF---AHTLAAGEWLTLAHHRDDQAET 125

Query: 135 VYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
             +R+ R  A    GL+ M       D  LW  RP L   R D+ ++ L + + W EDPS
Sbjct: 126 FLLRALR--ASGPEGLAAMRPQRPFADGTLW--RPLLAHSRADLLAYALAQEVRWIEDPS 181

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D R +    R F+R   L  L  +  +  D   +     A L      + ++  +A+ 
Sbjct: 182 NADPRHD----RNFLRSQVLPLLQQRWPQAVDALAR----SAQLSADASALLLQQDMALL 233

Query: 254 QDILNIDSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +      L  + LR               +A     +   G  ++ER +    + ++ 
Sbjct: 234 PSVCTASGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQA 293

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
           C +  +V + R    L++ R     PT     +    WDG    Q
Sbjct: 294 CFAWQQVEVRRWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQ 333


>gi|110640407|ref|YP_668135.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 536]
 gi|191172763|ref|ZP_03034300.1| tRNA(Ile)-lysidine synthase [Escherichia coli F11]
 gi|110341999|gb|ABG68236.1| putative cell cycle protein MesJ [Escherichia coli 536]
 gi|190906913|gb|EDV66515.1| tRNA(Ile)-lysidine synthase [Escherichia coli F11]
          Length = 437

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|330975382|gb|EGH75448.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 445

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +  +AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQTAADGWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     +P   L  AAR+ARY+  SE  + +   +++T    DDQ ET+  R  R  
Sbjct: 88  FESVR-VQVEPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R+ +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPDQRVLGRGH-LLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|88857960|ref|ZP_01132602.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Pseudoalteromonas tunicata D2]
 gi|88819577|gb|EAR29390.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Pseudoalteromonas tunicata D2]
          Length = 428

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 100/189 (52%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + VA+SGG DS+   + LH V + ++    +K  A+ V+H +   A     +   +C+ L
Sbjct: 21  LTVALSGGVDSV---VLLHLVATYQALNPDVKVQAVHVNHGISPHAHAWQDFCQRLCAEL 77

Query: 81  RIAHSVVSWK-NSKPQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I  + +S   + K +  L A ARE RY AL+S     +   +++  H  DDQ+ET +++
Sbjct: 78  TIPFNAISVTIDKKNRQSLEAVARELRYQALVS--VTQVQDVILLGQHQ-DDQVETFFLQ 134

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
            +R     G+ GLS M +T  ++  + + RP L   R  I +F  Q N+S  ED SN+D 
Sbjct: 135 LKRG---SGLSGLSAMANTSEFEGRILV-RPLLETSRASIEAFCQQFNLSHIEDESNSDV 190

Query: 198 RFERVRVRR 206
           +++R  +R 
Sbjct: 191 KYDRNYLRH 199


>gi|330936799|gb|EGH40956.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 445

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +  +AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQTAADGWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     +P   L  AAR+ARY+  SE  + +   +++T    DDQ ET+  R  R  
Sbjct: 88  FESVR-VQVEPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R+ +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPDQRVLGRGH-LLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|91209258|ref|YP_539244.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UTI89]
 gi|117622473|ref|YP_851386.1| tRNA(Ile)-lysidine synthetase [Escherichia coli APEC O1]
 gi|218557129|ref|YP_002390042.1| tRNA(Ile)-lysidine synthetase [Escherichia coli S88]
 gi|237704347|ref|ZP_04534828.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 3_2_53FAA]
 gi|331661259|ref|ZP_08362191.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA206]
 gi|91070832|gb|ABE05713.1| putative cell cycle protein MesJ [Escherichia coli UTI89]
 gi|115511597|gb|ABI99671.1| putative cell cycle protein MesJ [Escherichia coli APEC O1]
 gi|218363898|emb|CAR01563.1| tRNA(Ile)-lysidine synthetase [Escherichia coli S88]
 gi|226902259|gb|EEH88518.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 3_2_53FAA]
 gi|294494175|gb|ADE92931.1| tRNA(Ile)-lysidine synthase [Escherichia coli IHE3034]
 gi|307629764|gb|ADN74068.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UM146]
 gi|315285280|gb|EFU44725.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 110-3]
 gi|323950813|gb|EGB46690.1| PP-loop family protein [Escherichia coli H252]
 gi|323955070|gb|EGB50846.1| PP-loop family protein [Escherichia coli H263]
 gi|331052301|gb|EGI24340.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA206]
          Length = 432

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|333011028|gb|EGK30447.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-272]
 gi|333021823|gb|EGK41072.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-227]
          Length = 432

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|300990435|ref|ZP_07179203.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 200-1]
 gi|300305735|gb|EFJ60255.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 200-1]
          Length = 437

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|323495345|ref|ZP_08100423.1| tRNA(Ile)-lysidine synthase [Vibrio brasiliensis LMG 20546]
 gi|323310416|gb|EGA63602.1| tRNA(Ile)-lysidine synthase [Vibrio brasiliensis LMG 20546]
          Length = 439

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 8/187 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++ +SGG DS  +L  +     +R   +++  AI V H L   A          C  L 
Sbjct: 21  LVLGLSGGLDSRVMLELMAEYCHNR---QLECLAIHVHHGLSANADQWAMQCQHWCDSLG 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +   +       L  +AREARY  I+ H    +  L++T    DDQLET  +  +R
Sbjct: 78  VPLVIERVQLDSKGRSLEESAREARYQAIARHLN--DDDLLLTGQHCDDQLETFLLALKR 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG  LS M   + +  +L I RP L   R+ I  +  Q  +SW ED SN D RF+R
Sbjct: 136 GSGPKG--LSAMAHAMPFASSL-IVRPLLTSTRQQIEEYARQHQLSWVEDESNLDQRFDR 192

Query: 202 VRVRRFV 208
             +R  +
Sbjct: 193 NFIRHTI 199


>gi|322689831|ref|YP_004209565.1| hypothetical protein BLIF_1650 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320461167|dbj|BAJ71787.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 388

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +  S G ++   + VDH L+E ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGVVIVDHGLQEGSEQVAGEAADRCRALG 102

Query: 82  IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +   +V  +N+  Q    GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV + 
Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R    +G+  L+GM   +        +RP L   R++         + + +DP+N D
Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGATFARPLLTLTRDETTGLCEDLGVEYWDDPTNGD 215


>gi|293399915|ref|ZP_06644061.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306315|gb|EFE47558.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 406

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 28/236 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL         RS+G + F    +++  RE+A  +   V + C R  I
Sbjct: 14  VIGVSGGPDSMALLDMC------RSYG-LSFLVAHMNYQKRESAFRDEELVVNYCQRYEI 66

Query: 83  AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              V   +  KP  G   A AR  RY    E  +  +   I+ AH  DD LET  M+ +R
Sbjct: 67  PCYVK--RQKKPCKGNFQAFARAERYHFYHELLEKYHGDAILLAHHLDDHLETYLMQMER 124

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG+      +T+LYD    + RP L   ++++ ++ ++  + +  D SN  D + R
Sbjct: 125 --GSKGVYYGIQEETVLYDCK--VLRPLLSYTKQELLAYCIEHQVPYGFDESNFTDDYTR 180

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKV---NNAVAMLIPKYLTVHMRSIIAISQ 254
            R+R    D      ++  K+ ++L  ++   NN    ++ K      ++ +AI Q
Sbjct: 181 NRIRHSYID------HMSRKEKEELAAEIAEKNNKAQQVLEK-----TKAFLAIWQ 225


>gi|262170788|ref|ZP_06038466.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus MB-451]
 gi|261891864|gb|EEY37850.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus MB-451]
          Length = 440

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 97/204 (47%), Gaps = 19/204 (9%)

Query: 12  FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65
           FV+ L  YP   LV A+SGG DS  LL  L       + G+ +F     A+ V H L   
Sbjct: 8   FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   V+     C    I+  +   + +      +   AREARY  +S+H  +   TL++ 
Sbjct: 61  ADQWVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQHVDS--DTLLLL 118

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
               DDQLET  +  +R    KG  LS M     +    +++RP L   R+DI ++ +Q+
Sbjct: 119 GQHADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQG-YLARPLLTVSRQDIEAYAMQK 175

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
            +SW  D SN D R+ER  +R  +
Sbjct: 176 KLSWVTDESNLDTRYERNFLRHHI 199


>gi|116333183|ref|YP_794710.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus brevis ATCC 367]
 gi|116098530|gb|ABJ63679.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus brevis ATCC 367]
          Length = 450

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 7/186 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H LVAVS G DSM LL  L ++       + K + + V+H LR+ ++ E  ++   C+  
Sbjct: 22  HGLVAVSTGVDSMVLLQLLMTLPVTM---RPKLTVVHVNHQLRQQSQTEAAFLKKWCAAH 78

Query: 81  RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +I+     W  +  P  G+ AAAR  RY   ++      A  + TAH  D+Q+ET+ ++ 
Sbjct: 79  QISLVTTKWPIDQHPSHGVEAAARAFRYDFFAQQLHQQKADWVATAHQADEQVETILLKL 138

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   L+GM  +        + RP L   +E ++++  ++ + W ED +N +   
Sbjct: 139 IR--GGQLAQLTGMAASRPLAGGR-VIRPLLPFTKERLKAYAREQQVPWYEDATNQELIA 195

Query: 200 ERVRVR 205
            R RVR
Sbjct: 196 SRNRVR 201


>gi|170682716|ref|YP_001742316.1| tRNA(Ile)-lysidine synthetase [Escherichia coli SMS-3-5]
 gi|170520434|gb|ACB18612.1| tRNA(Ile)-lysidine synthase [Escherichia coli SMS-3-5]
          Length = 432

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|24111623|ref|NP_706133.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 301]
 gi|61216594|sp|Q7UDQ6|TILS_SHIFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|24050392|gb|AAN41840.1| cell cycle protein [Shigella flexneri 2a str. 301]
          Length = 432

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|222032018|emb|CAP74757.1| tRNA(Ile)-lysidine synthase [Escherichia coli LF82]
 gi|312944796|gb|ADR25623.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 432

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|170727604|ref|YP_001761630.1| tRNA(Ile)-lysidine synthetase [Shewanella woodyi ATCC 51908]
 gi|259533759|sp|B1KNS7|TILS_SHEWM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|169812951|gb|ACA87535.1| tRNA(Ile)-lysidine synthetase [Shewanella woodyi ATCC 51908]
          Length = 470

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 7/183 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +++A SGG DS  L   L   L  +S  + ++  + V H L   A   V +       
Sbjct: 25  AKLVLAYSGGVDSEVLAQGLS--LYAKSHPEFRYLLVHVHHGLSRNADAWVTHCQKQALD 82

Query: 80  LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            ++   VV  +  + P+  + A AR ARY  I+  +   +A +++TAH  DDQLETV + 
Sbjct: 83  YQLPIEVVQVQVKTGPRLSIEAEARRARYKAIT--SLMDSADVLLTAHHLDDQLETVLLA 140

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    KG  LS M    ++D +  + RP L   RE I +     ++   ED SNTDD+
Sbjct: 141 LKRGLGPKG--LSAMGALQVFDGDKQLLRPLLNVSREQIEAKAASLSLPHIEDESNTDDK 198

Query: 199 FER 201
           ++R
Sbjct: 199 YDR 201


>gi|30061745|ref|NP_835916.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 2457T]
 gi|30039987|gb|AAP15721.1| cell cycle protein [Shigella flexneri 2a str. 2457T]
 gi|281599543|gb|ADA72527.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 2002017]
 gi|332762035|gb|EGJ92306.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 2747-71]
 gi|332762192|gb|EGJ92461.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 4343-70]
 gi|332765037|gb|EGJ95265.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-671]
 gi|332768691|gb|EGJ98871.1| hypothetical protein SF293071_0275 [Shigella flexneri 2930-71]
 gi|333009368|gb|EGK28824.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-218]
 gi|333022234|gb|EGK41473.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-304]
          Length = 432

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|218698608|ref|YP_002406237.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI39]
 gi|218368594|emb|CAR16331.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI39]
          Length = 432

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|325496120|gb|EGC93979.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ECD227]
          Length = 431

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLISRQILVAFSGGLDST---VLLHQLVQWRTENPSVILRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|307718728|ref|YP_003874260.1| tRNA(Ile)-lysidine synthase [Spirochaeta thermophila DSM 6192]
 gi|306532453|gb|ADN01987.1| tRNA(Ile)-lysidine synthase [Spirochaeta thermophila DSM 6192]
          Length = 472

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 30/230 (13%)

Query: 6   IESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +E V  F +    V  A +LVA SGG DS  LL   HS+   R    +    + +DH +R
Sbjct: 2   LEKVYTFFKGFDHVEGAVVLVACSGGPDSTALL---HSLFLLRQRLNLTLKVVYLDHGIR 58

Query: 64  ETAK--DEVRYV------SDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
             ++   E R+V       D+ S + R+    +  +    +  +   ARE RYA   E  
Sbjct: 59  PRSERDQEYRFVMSLAETRDLPSHIKRLPEGWILHRAKASKKSVEEVAREERYAFFEELL 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCR 173
                  +   HT DDQ+ETV  R  R      + G+S + D  L        RP L C 
Sbjct: 119 SKGEGDYVALGHTRDDQVETVVFRFLRGSDPLALRGMSPVRDRYL--------RPLLSCS 170

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           R ++ SFL ++ +S+ ED SN  D ++    R F+R   +H L +  K+F
Sbjct: 171 RSEVLSFLQEQGLSYLEDSSNEKDAYD----RNFLR---IHVLPVLEKRF 213


>gi|30249025|ref|NP_841095.1| hypothetical protein NE1022 [Nitrosomonas europaea ATCC 19718]
 gi|61216622|sp|Q82VP4|TILS_NITEU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|30138642|emb|CAD84933.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 458

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 11/195 (5%)

Query: 11  FF--VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           FF  +R+ V P   + VA+SGG DS+   + LH + +     +++ SA+ V+H +   + 
Sbjct: 16  FFHNLRAQVRPGDRLTVALSGGVDSV---VLLHLLTTFSESMQLEVSAVHVEHGISTYSG 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   +   +C  L I  S+   K   +PQ  L A AREARY +     K I A  +M A 
Sbjct: 73  EWSAFCQSLCDSLAIPLSIHRLKIRRRPQESLEAIAREARYQIF----KHIQADYVMLAQ 128

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ ++  R    KG+        +     + + RP L   R +I ++     +
Sbjct: 129 HQDDQVETLILQLLRGAGVKGLSAMPTVRLLEPGKTIRLFRPLLNIPRSEILNYARLHGL 188

Query: 187 SWCEDPSNTDDRFER 201
           SW  D SN D  ++R
Sbjct: 189 SWVTDESNLDTSYDR 203


>gi|227326554|ref|ZP_03830578.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 457

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A SGG DS    + LH +++ R    +      + H L   A     +    C R +
Sbjct: 29  ILLAYSGGLDSS---VLLHLLVALRQRSGLPIRTAYIHHGLNPLADSWAEHCCQQCERWQ 85

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  + +S        G+ AAAR ARY  +  H +   A  ++TA   DDQ ET  +  +R
Sbjct: 86  VPFASLSVTVEAQNGGIEAAARTARYQALQAHLQEGEA--LLTAQHLDDQSETFLLALKR 143

Query: 142 DYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                G  LS M  + L   N  +      RP L   R  + ++  +  + W ED SN D
Sbjct: 144 GSGPAG--LSAMAASTLLGDNTTLGQHRLVRPLLGISRLQLEAYAQRHQLDWIEDDSNQD 201

Query: 197 DRFERVRVRRFV 208
           +RF+R  +RR +
Sbjct: 202 ERFDRNFLRRQI 213


>gi|157158325|ref|YP_001461357.1| tRNA(Ile)-lysidine synthetase [Escherichia coli E24377A]
 gi|193063304|ref|ZP_03044395.1| tRNA(Ile)-lysidine synthase [Escherichia coli E22]
 gi|193067588|ref|ZP_03048555.1| tRNA(Ile)-lysidine synthase [Escherichia coli E110019]
 gi|194428333|ref|ZP_03060875.1| tRNA(Ile)-lysidine synthase [Escherichia coli B171]
 gi|256021620|ref|ZP_05435485.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9]
 gi|260842420|ref|YP_003220198.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260853398|ref|YP_003227289.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260866337|ref|YP_003232739.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O111:H- str. 11128]
 gi|293476845|ref|ZP_06665253.1| cell cycle protein MesJ [Escherichia coli B088]
 gi|332282862|ref|ZP_08395275.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9]
 gi|157080355|gb|ABV20063.1| tRNA(Ile)-lysidine synthase [Escherichia coli E24377A]
 gi|192931212|gb|EDV83815.1| tRNA(Ile)-lysidine synthase [Escherichia coli E22]
 gi|192959000|gb|EDV89436.1| tRNA(Ile)-lysidine synthase [Escherichia coli E110019]
 gi|194413708|gb|EDX29988.1| tRNA(Ile)-lysidine synthase [Escherichia coli B171]
 gi|257752047|dbj|BAI23549.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257757567|dbj|BAI29064.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257762693|dbj|BAI34188.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O111:H- str. 11128]
 gi|291321298|gb|EFE60740.1| cell cycle protein MesJ [Escherichia coli B088]
 gi|320200286|gb|EFW74872.1| tRNA(Ile)-lysidine synthetase [Escherichia coli EC4100B]
 gi|323157975|gb|EFZ44077.1| tRNA(Ile)-lysidine synthetase [Escherichia coli EPECa14]
 gi|323176503|gb|EFZ62095.1| tRNA(Ile)-lysidine synthase [Escherichia coli 1180]
 gi|323181696|gb|EFZ67110.1| tRNA(Ile)-lysidine synthase [Escherichia coli 1357]
 gi|332105214|gb|EGJ08560.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9]
          Length = 432

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|328948674|ref|YP_004366011.1| tRNA(Ile)-lysidine synthase [Treponema succinifaciens DSM 2489]
 gi|328448998|gb|AEB14714.1| tRNA(Ile)-lysidine synthase [Treponema succinifaciens DSM 2489]
          Length = 454

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 24/191 (12%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVCS--- 78
           VAVSGG+DS+ LL+AL   L+      I+  A++V+H +R +  + D+  YV  VC    
Sbjct: 34  VAVSGGADSVSLLVALKKNLN------IQLKAVTVNHNIRSSKESSDDADYVESVCRSLG 87

Query: 79  ----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
               R  +A   +     K +T +  AAR+ RY   S+  KT   + +  AH  +DQ+ET
Sbjct: 88  VKCVRYDVAPGEIFSLAKKLKTSVEDAARKIRYEKFSDFIKTEGISFVCLAHNKNDQIET 147

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + MR    + +    L G+  T          RP L   R +I  +L  + I++  D +N
Sbjct: 148 LAMR----FLQGSANLCGIPMT-----REKFVRPLLNISRSEIEKYLQLQKINFRTDRTN 198

Query: 195 TDDRFERVRVR 205
            D++  R R+R
Sbjct: 199 FDNQIFRNRIR 209


>gi|289809587|ref|ZP_06540216.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 223

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|262044741|ref|ZP_06017788.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037891|gb|EEW39115.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 259

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 9/181 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL  L  VL       +   A+ V H L   A D V +   +C + +
Sbjct: 19  LLVAFSGGLDSTVLLHQL--VLLREQDPSLTLRAVHVHHGLSVHADDWVVHCRQICQQWQ 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQ 140
           +   V     ++   G+ A AR ARY    +   T+NA  +++TA   DDQ ET+ +  +
Sbjct: 77  VPLVVHHVTLARGGLGVEAHARAARYQAFQD---TLNAGEMLVTAQHQDDQCETLLLALK 133

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLS M  +  +  +  + RP L   RE +R + L   +SW ED SN DD ++
Sbjct: 134 R--GSGPTGLSAMAPSSAFAGSRLL-RPLLNETRESLRQWALAHQLSWIEDESNQDDTYD 190

Query: 201 R 201
           R
Sbjct: 191 R 191


>gi|116626117|ref|YP_828273.1| tRNA(Ile)-lysidine synthetase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251826|sp|Q01QT2|TILS_SOLUE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|116229279|gb|ABJ87988.1| tRNA(Ile)-lysidine synthetase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 440

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 21/190 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCS 78
           A + V VSGG+DS+ LL AL  +      G +K S + VDH LR   ++ +  +V ++ +
Sbjct: 6   ARVAVGVSGGADSVCLLHALVEL------GGLKLSVLHVDHGLRGAESRADAEFVGELAA 59

Query: 79  RLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R+ +      V     +  Q G     R AR     E     N   +   HT  DQ ETV
Sbjct: 60  RMGLPFCLREVTLGPGNVEQEG-----RRARLRFFHEQLAAGNCDRVALGHTRSDQAETV 114

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R  R       GL+G+           I RP +   R +I  +L +R I W ED +N 
Sbjct: 115 LFRFLRGSGT--AGLAGIRPVTAEG----IVRPLIELERAEIEEYLRERQIPWREDATNA 168

Query: 196 DDRFERVRVR 205
            + F R R+R
Sbjct: 169 GEEFARNRIR 178


>gi|309700396|emb|CBI99684.1| tRNA(Ile)-lysidine synthase [Escherichia coli ETEC H10407]
          Length = 432

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADTWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|311694162|gb|ADP97035.1| cell cycle protein MesJ [marine bacterium HP15]
          Length = 449

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 91/200 (45%), Gaps = 14/200 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           VR L     + VA+SGG DS  LL +A H        G ++  AI ++H L+  A D   
Sbjct: 21  VRELPDHTRLWVALSGGLDSTLLLHLAAHC---HGCSGAVR--AIHINHQLQPNASDTES 75

Query: 72  YVSDVCSRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           +    C RL +      V          G+  AAR+ARYA +   A      L++ AH  
Sbjct: 76  FCRGECERLGVPLVVERVTVDGGRSSGAGIEEAARKARYAAL--EALVGKGDLVLMAHHG 133

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV  R  R       GL+GM  +        + RP L   R ++  +     +SW
Sbjct: 134 DDQAETVLFRMLRGSGV--AGLAGMPASRELGTAT-LVRPLLGFERAELERWARVAGLSW 190

Query: 189 CEDPSNTDDRFERVRVRRFV 208
            +DPSNTD RF+R  +R  V
Sbjct: 191 VDDPSNTDQRFDRNFLRHTV 210


>gi|324112401|gb|EGC06378.1| PP-loop family protein [Escherichia fergusonii B253]
          Length = 431

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRAENPGVTLRAIHVHHGLSANANAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|307246460|ref|ZP_07528533.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255443|ref|ZP_07537250.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259895|ref|ZP_07541609.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852664|gb|EFM84896.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861627|gb|EFM93614.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866065|gb|EFM97939.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 419

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 170/401 (42%), Gaps = 37/401 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + ++ +SGG DS+ LL  L  +  +         A+ + H L   A     +   VC RL
Sbjct: 19  NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADSWAAFCEQVCKRL 71

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   +      + + G+ A AR ARY  I E  +  N  L+ TAH  DDQ ET  +  +
Sbjct: 72  KIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M   + +  N  I RP L   +  I  + LQ+  +W ED SN D  ++
Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R+  L  +  + + F  +  +     A   ML+ + L   ++     S+  L
Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241

Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308
           NI++   F       L+R+    CG Q  +P    + +++   ++    K   + +    
Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYTDVDKNPQLKLADFW 299

Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           + R  + L++T  +   P     P    +  T+ DG  + Q+L DS+I        +  +
Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSIIYQKSGKIDRLLL 358

Query: 365 PSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404
           P  +     Q  L+     K+ GKP+     +   +  +PV
Sbjct: 359 PKALVNAPLQVKLTHQGKVKQYGKPMREEMKKRYQQAQVPV 399


>gi|213691452|ref|YP_002322038.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|296454758|ref|YP_003661901.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|254789034|sp|B7GP48|TILS_BIFLI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|213522913|gb|ACJ51660.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|296184189|gb|ADH01071.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|320457524|dbj|BAJ68145.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 388

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 13/179 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +  S G ++  A+ VDH L+E ++      ++ C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQEGSEQVAGEAANRCRALG 102

Query: 82  IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +   +V  +N+  Q    GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV + 
Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R    +G+  L+GM   +     +  +RP L   R +         + + +DP+N D
Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGVTFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215


>gi|307257612|ref|ZP_07539372.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863915|gb|EFM95838.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 419

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 170/401 (42%), Gaps = 37/401 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + ++ +SGG DS+ LL  L  +  +         A+ + H L   A +   +   VC RL
Sbjct: 19  NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADNWAAFCEQVCKRL 71

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AR ARY  I E  ++ N  L+ TAH  DDQ ET  +  +
Sbjct: 72  KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQS-NEVLV-TAHHLDDQTETFLLALK 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M   + +  N  I RP L   +  I  + LQ+  +W ED SN D  ++
Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R+  L  +  + + F  +  +     A   ML+ + L   ++     S+  L
Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241

Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308
           NI++   F       L+R+    CG Q  +P    + +++   ++    K   + +    
Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYTDVDKNPQLKLADFW 299

Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           + R  + L++T  +   P     P    +   + DG  + Q+L DS+I        +  +
Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLALPDGIGELQHLGDSIIYQKSGKIDRLLL 358

Query: 365 PSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404
           P  +     Q  L+     K+ GKP+     +   +  +PV
Sbjct: 359 PEALVNAPLQVKLAHQGKVKQYGKPMREEMKKRYQQAQVPV 399


>gi|331651093|ref|ZP_08352121.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           M718]
 gi|331051547|gb|EGI23596.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           M718]
          Length = 432

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|289675284|ref|ZP_06496174.1| PP-loop [Pseudomonas syringae pv. syringae FF5]
          Length = 276

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +  +AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQTAADGWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     +P   L  AAR+ARY+  SE  + +   +++T    DDQ ET+  R  R  
Sbjct: 88  FESVR-VQVEPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R+ +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPDQRVLGRGHLL-RPLLDVSRKHLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|323964919|gb|EGB60385.1| PP-loop family protein [Escherichia coli M863]
 gi|327255167|gb|EGE66770.1| tRNA(Ile)-lysidine synthase [Escherichia coli STEC_7v]
          Length = 431

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLISRQILVAFSGGLDST---VLLHQLVQWRTENPSVILRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEISEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|323342361|ref|ZP_08082593.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463473|gb|EFY08667.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 400

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 17/234 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V VSGG DSM LL     +LS ++   I   A  V++  RET+K +   V   C +  I
Sbjct: 7   IVGVSGGPDSMALL----DILSKQN---IPCVAAHVNYGKRETSKRDEDIVRKYCEKNHI 59

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                ++++          AR  RYA   E     +A  +  AH F+D LET   + QR 
Sbjct: 60  PFECSNYEDDGKNHNFQHQARAFRYAFFKELVLKYDAEGVAIAHHFNDDLETYLFQKQRK 119

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              + +GL+    T + D+ +W  RP L   ++ +  +     I +  D SN    + R 
Sbjct: 120 MESEHVGLAQY--TEIMDVTVW--RPLLDMTKDMVVQYCDDHQIQYGIDESNLSLDYTRN 175

Query: 203 RVRRFVRDIDLHAL------YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           ++R  +  +D ++        L  K++ + R K+  ++A+ +   + V M ++I
Sbjct: 176 QIRNDIHYMDENSYESLVKEMLAAKQYGEKRSKMVKSIALQLDSKVKVDMYALI 229


>gi|149377460|ref|ZP_01895202.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893]
 gi|149358227|gb|EDM46707.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893]
          Length = 416

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 12/157 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIA---HSVVSWKNSKPQ----TGLMAAARE 104
           + SAI ++H L+  A D  R+  D+C  L +      V+      P+     G+  AAR 
Sbjct: 19  QVSAIHINHQLQPNADDAERFCEDICRELGVPLDIRRVIVSSRETPEIDTSGGVEEAARN 78

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           ARY +  E        L++ AH  DDQ ETV  R  R     G+G  GM  T        
Sbjct: 79  ARYQVFEE--ILAPGELLLMAHHGDDQAETVLFRLLRGTGVVGLG--GMPITRPLGAGR- 133

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           + RP L   R ++ ++  +  I W EDPSN D+RF+R
Sbjct: 134 LYRPLLDFSRAELHAWAAEHGIEWMEDPSNIDERFDR 170


>gi|225075259|ref|ZP_03718458.1| hypothetical protein NEIFLAOT_00262 [Neisseria flavescens
           NRL30031/H210]
 gi|224953434|gb|EEG34643.1| hypothetical protein NEIFLAOT_00262 [Neisseria flavescens
           NRL30031/H210]
          Length = 441

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 144/327 (44%), Gaps = 42/327 (12%)

Query: 19  PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P+H +  V +SGG DS+ LL  LH +   R F      A+ V H L   A    ++  D 
Sbjct: 21  PSHTVFEVGLSGGLDSVVLLHLLHRM---REFRYFDLRAVHVHHGLSTNADSWAKFCQDY 77

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C RL +A  V      K   GL AAAR ARY   S+  K I    I+ AH  +DQ+ET  
Sbjct: 78  CQRLNVALRVCRVNVEKQGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILY-DLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           + + R     G GL GM    ++ DLN  + I RP L   R+++  +  Q  +S+ ED S
Sbjct: 134 LSAVR-----GGGLRGMAAMPVWRDLNEEIQIWRPILAFSRQELVEYAQQWGLSFVEDES 188

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN---------NAVAMLIPKYLTV 244
           N D  +    +R ++R+  L     ++  F+  ++  N             ++  +Y  +
Sbjct: 189 NEDSGY----LRNWMRNQALPQWQQRIPNFEQ-QICANVRLLQEDLQLLDELIESEYQRI 243

Query: 245 HMRSIIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
               I ++S   Q    +   LL+Y LR          SLP Y S+      L++  +  
Sbjct: 244 SPNGIFSVSLWRQCTPLLRRRLLWYFLRKQTE------SLPSYHSIADFARVLETADQAQ 297

Query: 302 VSI--GRVVIDRRANFLWITRAVRNLP 326
           +++  G +V  R   F+      + LP
Sbjct: 298 LNLSDGELVAYRDKLFVCQESEFQKLP 324


>gi|300775911|ref|ZP_07085771.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC
           35910]
 gi|300505461|gb|EFK36599.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC
           35910]
          Length = 449

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 13/199 (6%)

Query: 13  VRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68
           +++LV+       L+AVSGG DSM L         +    K +F    +++ LR    D 
Sbjct: 11  LKNLVHEPEKHTFLLAVSGGVDSMVLASLFRDFGQEIQDSKFRFQVAHINYKLRGNDSDL 70

Query: 69  EVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           + + V D C +  I   +  VS K+ KP+  +   ARE RY       +      ++TAH
Sbjct: 71  DQKTVQDFCEKNHIKFHLYEVSEKDQKPENSIQLWARELRYRFFKTIQEKEKLEFLVTAH 130

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +DQLET  +        K  G++G+     +D N  I RP L   +++I  F    +I
Sbjct: 131 HLNDQLETFIIN-----LSKAAGINGLSGIPSHDNN--ILRPLLNFSKKEIYQFAELNHI 183

Query: 187 SWCEDPSNTDDRFERVRVR 205
            + ED SN  + + R ++R
Sbjct: 184 EFREDLSNKKNDYLRNKIR 202


>gi|119953563|ref|YP_945773.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia turicatae 91E135]
 gi|119862334|gb|AAX18102.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia turicatae 91E135]
          Length = 439

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 25/212 (11%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+ IES  F+ ++ +    ++VA SGG+DS  LL++L   L++         A+   H +
Sbjct: 8   LTKIES--FYFKNSLTKEKVIVAFSGGADSTTLLLSLKEYLNN------NIVALYFAHYI 59

Query: 63  RETAKD--EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAA--AREARYALISEHA 114
           R   +   E+ ++   C+   I   +    V  K    Q G+     AR+ RY  + E  
Sbjct: 60  RSDFEQNLEIEHIKKFCNFYSITFQIKRCSVDIKRKSRQLGMSVEELARKYRYDALLESF 119

Query: 115 KTINATLIMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
               A+ I  AH  +DQ ET+ MR  Q  + +   GLSG+       +N  I RP +   
Sbjct: 120 IENGASYIALAHNQNDQFETLVMRFFQGSFLD---GLSGIPV-----INGNIIRPLIEVS 171

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           REDI  FL   NI +  D +N +D + R R+R
Sbjct: 172 REDIEKFLSLNNIVYSVDSTNREDLYLRNRIR 203


>gi|262281027|ref|ZP_06058810.1| tRNA(Ile)-lysidine synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257927|gb|EEY76662.1| tRNA(Ile)-lysidine synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 467

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 17/186 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DSM LL  +  +         K  AI +DH L+  + +  + V+   +RL I
Sbjct: 34  LIGCSGGMDSMLLLHLISQIFPQ------KIRAIYIDHQLQSQSAEWGKLVAKQATRLDI 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            + +   K       L A AR+ARY    +H +  N  L++ AH   DQ ETV +R    
Sbjct: 88  PYIIQ--KVQVADGNLEAQARQARYQAYRQHLQP-NEILVL-AHHQQDQAETVMLR---- 139

Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               G G+ G+    +I Y +++ I RPFL   RE I  +  Q  I +  DP+N D  ++
Sbjct: 140 -LLSGAGVDGLAAMQSIDYRVDMTIWRPFLDLTREQIADWTTQLEIEYVNDPTNYDIHYD 198

Query: 201 RVRVRR 206
           R   R 
Sbjct: 199 RAWSRE 204


>gi|284048931|ref|YP_003399270.1| tRNA(Ile)-lysidine synthetase [Acidaminococcus fermentans DSM
           20731]
 gi|283953152|gb|ADB47955.1| tRNA(Ile)-lysidine synthetase [Acidaminococcus fermentans DSM
           20731]
          Length = 350

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 15/190 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++ A+SGG+DS+ L   + +   +     +   A+ V H LR E A+ + R V D C   
Sbjct: 24  VIAALSGGADSLCLADVMAAQGEEDG---VDVLAVHVQHHLRGEEAEQDARQVEDYCRNR 80

Query: 81  RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +A   V         K    L  AAR  RY  +    +   A  I  AH  DDQ ETV 
Sbjct: 81  GLAFRRVDVDARSLAEKEGLSLEDAARRLRYEALETCRQEAGAEAIFLAHHQDDQAETVL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R    +G  L GM       +N +++RPFL   R D  ++  +  ++WC+D +N D
Sbjct: 141 LNLVRGAGTRG--LRGM-----LPVNGYLARPFLGITRRDTEAYCEEMGLTWCQDSTNED 193

Query: 197 DRFERVRVRR 206
              +R  VR+
Sbjct: 194 QSLKRNWVRK 203


>gi|73540827|ref|YP_295347.1| PP-loop [Ralstonia eutropha JMP134]
 gi|72118240|gb|AAZ60503.1| PP-loop [Ralstonia eutropha JMP134]
          Length = 484

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 8/188 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA+SGG DS+ LL A  + +S       +  A+ V H L+  A     + +D+C+R  
Sbjct: 46  VAVALSGGRDSVALLHATQAAVSAWRM-PARVVALHVHHGLQAQADAWDAFCADLCARWE 104

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + + V  VS +    + G+ AAAR ARY  + +  +   A  ++ AH  DDQ+ETV +R 
Sbjct: 105 LGYFVRRVSVQAGTGE-GIEAAARRARYEALGDMCRASGARFLLFAHHLDDQVETVLLRL 163

Query: 140 QRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
            R     GM  SGM      D   ++ + RP+L   R DI S+     ++W +DPSN   
Sbjct: 164 FRGAGVAGM--SGMPAMRKLDEAGDIMLLRPWLEVPRADIDSYCAAHELAWIDDPSNDST 221

Query: 198 RFERVRVR 205
           R+ R  +R
Sbjct: 222 RYARNALR 229


>gi|291281010|ref|YP_003497828.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|209745670|gb|ACI71142.1| cell cycle protein MesJ [Escherichia coli]
 gi|290760883|gb|ADD54844.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|320658308|gb|EFX26037.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663618|gb|EFX30902.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 431

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|257868303|ref|ZP_05647956.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874424|ref|ZP_05654077.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257802417|gb|EEV31289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808588|gb|EEV37410.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 466

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 5/187 (2%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            L+AVS G DSM LL     +  +    +  F    V+H LR  +  E  ++   C    
Sbjct: 21  FLLAVSTGVDSMVLLQIFCQLFPEMQ-KEPCFGVAHVNHQLRPASAKEAAFLRQYCQERG 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I      W+N  P+TG+ A+AR+ RY   ++        +++TAH  DDQ+ET+ M+  R
Sbjct: 80  IPFYERCWENP-PETGVEASARDFRYTFFADVMSQEGYDVLLTAHHSDDQVETMLMKMMR 138

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           +   +  G  GM     +   + + RP L   +  I  +   + I + ED SN +  + R
Sbjct: 139 EGRLRSAG--GMQQQQPFHTGVLL-RPLLTVSKAAIYDYAQAQQIPYFEDESNHEPLYLR 195

Query: 202 VRVRRFV 208
            R+R+ V
Sbjct: 196 NRLRQQV 202


>gi|71892070|ref|YP_277800.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123641037|sp|Q493B5|TILS_BLOPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|71796176|gb|AAZ40927.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 510

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 10/202 (4%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETA 66
           R     LV    ++++ SGG DS  LL  L  + ++            AI V H +   +
Sbjct: 15  RKVTHCLVGHTRLVLSYSGGLDSTVLLDILTRLKNNSDHFTSSPFMLRAIYVHHGISNYS 74

Query: 67  KDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            +   +  + C    I  SV+    +     Q  + A AR  RY  +  + +  +  +++
Sbjct: 75  DEWASHCFNQCKIRGIPFSVIHINCYNAENKQRNIEALARNLRYKKL--YNRLNSKEILL 132

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  +DQ+E++++  +R       GLSGM    LY     + RP L C RE +  +  +
Sbjct: 133 TAHHMNDQVESLFLALKR--GSGPSGLSGMSKNALYANKYRLLRPLLDCSREQLEMYAYK 190

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
           + + W ED +NTD RF+R  +R
Sbjct: 191 KKLVWIEDDTNTDTRFDRNFLR 212


>gi|188492707|ref|ZP_02999977.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 53638]
 gi|254037607|ref|ZP_04871684.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 1_1_43]
 gi|188487906|gb|EDU63009.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 53638]
 gi|226840713|gb|EEH72715.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 1_1_43]
          Length = 432

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|293408280|ref|ZP_06652120.1| tilS [Escherichia coli B354]
 gi|291472531|gb|EFF15013.1| tilS [Escherichia coli B354]
          Length = 432

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|283835250|ref|ZP_06354991.1| tRNA(Ile)-lysidine synthetase [Citrobacter youngae ATCC 29220]
 gi|291068961|gb|EFE07070.1| tRNA(Ile)-lysidine synthetase [Citrobacter youngae ATCC 29220]
          Length = 430

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA SGG DS  LL  L  VL      ++   AI + H L   A   V++   VC++ +
Sbjct: 16  ILVAFSGGLDSTVLLHQL--VLWRAQHPQVALRAIHIHHGLSPHADGWVQHCESVCAQWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V          G+ A AR ARY   ++    +   ++MTA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVHLEDDGLGIEAQARRARYQAFAQ--TLLPGEVLMTAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M +   +     I RP L   RE +  +  Q  + W ED SN DD ++R
Sbjct: 132 GSGPAG--LSAMGERSPFAGTQLI-RPLLAQTREALEGWARQHQLCWIEDESNQDDAYDR 188


>gi|209745664|gb|ACI71139.1| cell cycle protein MesJ [Escherichia coli]
 gi|320644764|gb|EFX13808.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H- str.
           493-89]
 gi|320652920|gb|EFX21158.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H- str. H
           2687]
 gi|320668931|gb|EFX35726.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 431

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|320173331|gb|EFW48534.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae CDC 74-1112]
          Length = 432

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|323935028|gb|EGB31401.1| PP-loop family protein [Escherichia coli E1520]
          Length = 431

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|325971761|ref|YP_004247952.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy]
 gi|324026999|gb|ADY13758.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy]
          Length = 484

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 99/218 (45%), Gaps = 23/218 (10%)

Query: 7   ESVRFFVRSLVYPAHI------LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           E+V   VRS +   HI       VA SGGSDS+ LLIAL   + + SF      A+ V H
Sbjct: 6   ETVLNNVRSFLAMQHIDATKRIGVAFSGGSDSLALLIALRK-MYEPSF----LHAMYVQH 60

Query: 61  CLRETAKDEVRYV--SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALIS 111
            LR + + E       + C +L ++  +       V+      + G+  AAR  RY  + 
Sbjct: 61  HLRPSNELEAETALNRENCQKLGVSLHILDLGKGSVAHAMQTRRGGVEEAARYLRYEALY 120

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFL 170
           E       T + TAH  DDQLET  MR  +  A     L G+    + D   L + RP L
Sbjct: 121 EECNRGGCTYLATAHNADDQLETTLMRLFQ--ASSIAALEGIRPVRIVDGYALTLIRPVL 178

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            C    +  ++   N+ W ED +NT+D + R  +R  +
Sbjct: 179 ECSHAVLAEYVGLHNLVWSEDSTNTEDAYLRNTIRHTI 216


>gi|319760425|ref|YP_004124363.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318039139|gb|ADV33689.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 535

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 15/197 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-------LSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           ++L++ SGG DS  LL  L ++       +  R F  +   A+ V H L E A D   + 
Sbjct: 34  NLLLSYSGGLDSTVLLDILTTLTKNSQIWMKSRKF-PLFLKAVYVHHGLNEKADDWANHC 92

Query: 74  SDVCSRLRIAHSV--VSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +  C    +  ++  + + N  K ++ + + AR+ RY ++ ++       +++TAH  DD
Sbjct: 93  AHQCQIRDVPFNILYIQYFNFCKKRSNVESLARKLRYQVLYDYLNVNVEEILLTAHHMDD 152

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           QLETV +  +R       GLSG+   +   YD    + RP L C R  +  +  +R + W
Sbjct: 153 QLETVLLALKR--GSGPAGLSGISREVWLNYDYRYRVLRPLLGCSRGQLEEYAHRRKLIW 210

Query: 189 CEDPSNTDDRFERVRVR 205
             D +N + RF+R  +R
Sbjct: 211 INDDTNVNIRFDRNFLR 227


>gi|291295391|ref|YP_003506789.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
 gi|290470350|gb|ADD27769.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
          Length = 521

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 20/190 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +V    ++ AVSGG DS+ LL+ L S          K     +DH LR  +  +  +V  
Sbjct: 20  MVPEGSLVAAVSGGGDSVALLLLLTSTPR-------KVVVAHLDHSLRPESGQDALWVKA 72

Query: 76  VCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  RL          V+   ++    L A ARE RY  +++ AK   A  I+TAHT DDQ
Sbjct: 73  LAERLGYPFESEKLDVAKIAAERGGNLEATARELRYGFLAKVAKKHQAQAILTAHTEDDQ 132

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV ++  +    +G+G+      ++        RP L   R  +R++L  +   W ED
Sbjct: 133 AETVLLQLLQGTG-RGLGMRPKRGKVV--------RPLLELSRSTLRAYLRCKQQDWLED 183

Query: 192 PSNTDDRFER 201
            SN D   +R
Sbjct: 184 ISNADTSLDR 193


>gi|302342198|ref|YP_003806727.1| tRNA(Ile)-lysidine synthetase [Desulfarculus baarsii DSM 2075]
 gi|301638811|gb|ADK84133.1| tRNA(Ile)-lysidine synthetase [Desulfarculus baarsii DSM 2075]
          Length = 466

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 91/192 (47%), Gaps = 14/192 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  ++ AVSGG+DS+ +L  L    S+R +   +     VDH LR  +  +  +V+D+  
Sbjct: 8   PGTLVAAVSGGADSVAMLRLLAEQASERGW---RLVVGHVDHGLRADSAVDAAFVADLAG 64

Query: 79  RLRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L +   VV  +    Q GL    AAR AR   +   A+ ++A  +  AHT DDQ ETV 
Sbjct: 65  ALGLECRVV--RVVARQAGLSPEDAARRARRQALLALAEELDAVAVALAHTIDDQAETVL 122

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R        G G  G+         LW  RP L  R  ++R +L      W EDPSN D
Sbjct: 123 ARLL-----TGAGPGGLAAMRPRSGPLW--RPLLAVRGRELRDYLAALGQPWREDPSNAD 175

Query: 197 DRFERVRVRRFV 208
             ++R R+R  V
Sbjct: 176 RAYQRNRLRHAV 187


>gi|82542786|ref|YP_406733.1| tRNA(Ile)-lysidine synthetase [Shigella boydii Sb227]
 gi|187730131|ref|YP_001878990.1| tRNA(Ile)-lysidine synthetase [Shigella boydii CDC 3083-94]
 gi|81244197|gb|ABB64905.1| cell cycle protein [Shigella boydii Sb227]
 gi|187427123|gb|ACD06397.1| tRNA(Ile)-lysidine synthase [Shigella boydii CDC 3083-94]
 gi|320186610|gb|EFW61335.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri CDC 796-83]
 gi|332098780|gb|EGJ03740.1| tRNA(Ile)-lysidine synthase [Shigella boydii 3594-74]
          Length = 432

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|283457230|ref|YP_003361800.1| putative ATPase [Rothia mucilaginosa DY-18]
 gi|283133215|dbj|BAI63980.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Rothia mucilaginosa DY-18]
          Length = 377

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS   L            G ++  AI VDH L+E +       +   + L 
Sbjct: 53  LLVACSGGPDS---LALAAIAAHFARRGDVRVGAIIVDHDLQEDSAAVAAQTAQTLTDLG 109

Query: 82  IAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + H V++ K   P    G   AAR ARY   ++  +   A  ++  HT DDQ ETV +  
Sbjct: 110 L-HPVITEKVQVPVGNMGPEMAARTARYTAFTKAVEATGARAVLLGHTLDDQAETVLLGL 168

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   L+GM    + +   ++ RPFL  RR D+ +      ++   DP+NTD+  
Sbjct: 169 SRGSGTR--SLAGMPPVRVEEGVTYL-RPFLGLRRTDMLNICDAETLTPWIDPTNTDETL 225

Query: 200 ERVRVRRFV 208
            R R+R  V
Sbjct: 226 MRARIRHSV 234


>gi|225375860|ref|ZP_03753081.1| hypothetical protein ROSEINA2194_01492 [Roseburia inulinivorans DSM
           16841]
 gi|225212295|gb|EEG94649.1| hypothetical protein ROSEINA2194_01492 [Roseburia inulinivorans DSM
           16841]
          Length = 487

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 29/204 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS-- 78
           +L  VSGG+DS+ LL+ L  +     F      A+ V+H +R E ++ +  +V ++C   
Sbjct: 21  VLAGVSGGADSVCLLLMLEQLQKKTDF---LLEAVHVEHGIRGEESRKDAAFVKNLCQDH 77

Query: 79  --RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL------IMTAHTFDD 130
             R  I    V     K   GL  AAR  RY    + A+++          +  AH  +D
Sbjct: 78  GIRCHIFSVEVPLFAEKHGLGLEEAARILRYDCYKKAAESVKKEFPEKKIKLALAHHAED 137

Query: 131 QLETVYMRSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQR 184
             ETV  +  R     G GL G+C      D  +Y+L     RP L   RE+I +FL + 
Sbjct: 138 NAETVLFQMVR-----GSGLDGLCGMSRRRDEGIYEL----IRPLLAQPREEIEAFLREC 188

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
             S+C D +N D  + R R+R  V
Sbjct: 189 GQSYCMDETNLDTEYSRNRIRHQV 212


>gi|126173704|ref|YP_001049853.1| Fis family transcriptional regulator [Shewanella baltica OS155]
 gi|125996909|gb|ABN60984.1| transcriptional regulator, Fis family [Shewanella baltica OS155]
          Length = 476

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 9/193 (4%)

Query: 11  FFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           F V   + P   +++A SGG DS  L   L      R   +  +  + V H L + A   
Sbjct: 21  FLVEQPLAPDCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFHYQLVYVHHGLSDNADSW 78

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            ++  +      +  +V     N  P+  L A AR+ RY  I  H    +  +++TAH  
Sbjct: 79  AQHCLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHE 136

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET+ +  +R +  KG+   G    +     L   RP L   RE I ++  Q+ +  
Sbjct: 137 DDQLETILLALKRGHGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVH 193

Query: 189 CEDPSNTDDRFER 201
            ED SN DD+++R
Sbjct: 194 IEDESNQDDKYDR 206


>gi|195953926|ref|YP_002122216.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933538|gb|ACG58238.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 306

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 10/187 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+  SGG DSM +L  L   L D + G I+      +H LRE A ++  +  D    L+
Sbjct: 23  ILIGFSGGVDSM-VLSCLMYKLKD-ALG-IEIGLAHFNHHLREDADEDEAFCIDFAKSLK 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V S+     +  +   AR+ RY  + + +K      I TAH  DD  ET+ +    
Sbjct: 80  LPIYVESFDIKSLKGNIEENARKKRYEFLQKTSKKEGYNKIATAHHLDDLAETMIL---- 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            +  +G GL G+     Y  N  I RP +   +++IR+F  +++++W ED +N D+   R
Sbjct: 136 -WFVRGGGLKGLSGFKAYKEN--IIRPLITATKDEIRAFAKEQHLNWKEDYTNYDETISR 192

Query: 202 VRVRRFV 208
             +R  V
Sbjct: 193 NLIRHKV 199


>gi|170021459|ref|YP_001726413.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ATCC 8739]
 gi|169756387|gb|ACA79086.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ATCC 8739]
          Length = 432

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|254520535|ref|ZP_05132591.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. 7_2_43FAA]
 gi|226914284|gb|EEH99485.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. 7_2_43FAA]
          Length = 469

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L+ +   R    I   A  V+H LR + A ++  Y  ++C   
Sbjct: 26  VLVALSGGPDSVCLLHILYKL---RESLNIDIGAAHVNHMLRGQDALNDEEYAKEICKEF 82

Query: 81  RIAHSVVSWKNSK--PQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    +     K   + G+    A RE RY        T N + I  AH  +DQ ETV 
Sbjct: 83  NIEFYPIRIDIDKIAKEKGISHEMAGREERYKFFDFIKNTQNYSKIAVAHNSNDQAETVV 142

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   R     G G+ G+C  I    +  I RP L   RED+ ++  + N++   D +N +
Sbjct: 143 MNMMR-----GAGIEGLC-GIRSKRDGGIIRPILCLSREDVENYCKENNLNPRIDKTNLE 196

Query: 197 DRFERVRVR 205
           + + R +VR
Sbjct: 197 NIYSRNKVR 205


>gi|330470517|ref|YP_004408260.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032]
 gi|328813488|gb|AEB47660.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032]
          Length = 329

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 14/210 (6%)

Query: 3   LSP-IESVRFFVRSLV--YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +SP + ++R  VR ++   PA   +LVA SGG+DS+  L A  + ++ RS G++    ++
Sbjct: 4   ISPSVAAIRVAVRRVLAELPADGPVLVACSGGADSL-ALAAAAAFVAPRS-GRVA-GLVT 60

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           VDH L+  + +    V+    +  ++   VV  + +    G  AAAREARY  + E A  
Sbjct: 61  VDHGLQTGSAERAEAVARWAEQAGLSPVEVVRVEVAGRPGGPEAAAREARYQALVEAAGR 120

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRRE 175
             A  ++T HT DDQ ETV +   R    +  GL+GM   +  DL  + + RP L   RE
Sbjct: 121 HRAAALLTGHTRDDQAETVLLALARGAGPR--GLAGM--PVRRDLGGVPLVRPLLEISRE 176

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
             R+      ++  +DP N D  + R RVR
Sbjct: 177 QTRAACAALRLTPWQDPHNLDPAYARSRVR 206


>gi|326692378|ref|ZP_08229383.1| tRNA(Ile)-lysidine synthase [Leuconostoc argentinum KCTC 3773]
          Length = 435

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 14/204 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE ++  +++  +   I+VAVSGG DS+ LL AL   L        +     V++ LR  
Sbjct: 2   IEKIQQQLQAQDWEPTIIVAVSGGVDSVVLLHALRQHLP-----TAQLVVAHVNYHLRAE 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + ++  +V+++  + +    +  W +  P TG+ A AR  RY      A       I  A
Sbjct: 57  SDEDAAFVAELAQQYQAQFELCEW-DDIPTTGVEAQARTLRYRFFEALAAKYQTQTIAVA 115

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +DQ ETV ++  R    +   L+GM  +        I RPFLR  ++ + S+     
Sbjct: 116 HHANDQAETVLLKLAR--GGQVTQLAGMATSRAK-----IRRPFLRITKQTLMSYAQAHG 168

Query: 186 ISWCEDPSNTD-DRFERVRVRRFV 208
           ++W  D +N D D   R R+R  V
Sbjct: 169 LTWRHDQTNDDPDYTARNRLRHVV 192


>gi|300790558|ref|YP_003770849.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32]
 gi|299800072|gb|ADJ50447.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32]
          Length = 319

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 88/197 (44%), Gaps = 16/197 (8%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+ +L  P  + VAVSGG+DS+ L  A   V   R        A+ VDH L+E +     
Sbjct: 16  FLETLEAPPELCVAVSGGADSLALAEAAAYVGHHRGH---VVRALVVDHGLQEGSAKIAA 72

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +     L +  + V   +     G  AAAR+ARY +++ H       L++  HT DDQ
Sbjct: 73  DAAAAAKALGVDEAEVRRADVTGAGGPEAAARKARYRVLAGH------DLVLLGHTLDDQ 126

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +   R     G G   +     +D   W  RP L   R   R+   +  +   +D
Sbjct: 127 AETVLLGLGR-----GSGPRSVAGMRPHD-PPW-GRPLLAVGRATTRAACAELGVEPWDD 179

Query: 192 PSNTDDRFERVRVRRFV 208
           P N + RF RVR+R  V
Sbjct: 180 PHNAEPRFTRVRLRTEV 196


>gi|255326128|ref|ZP_05367215.1| tRNA(Ile)-lysidine synthase [Rothia mucilaginosa ATCC 25296]
 gi|255296839|gb|EET76169.1| tRNA(Ile)-lysidine synthase [Rothia mucilaginosa ATCC 25296]
          Length = 377

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 85/189 (44%), Gaps = 9/189 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS   L            G ++  AI VDH L+E +       +   + L 
Sbjct: 53  LLVACSGGPDS---LALAAIAAHFARRGDVRVGAIIVDHDLQEDSAAVAAQTAQTLTELG 109

Query: 82  IAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + H V+  K   P    G   AAR ARYA  ++  +   A  ++  HT DDQ ETV +  
Sbjct: 110 L-HPVIIEKVQVPVGNMGPEMAARTARYAAFTKAVEATGARAVLLGHTLDDQAETVLLGL 168

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   L+GM   +  +  +   RPFL  RR D+        ++   DP+NTD+  
Sbjct: 169 SRGSGTR--SLAGM-PPVRVEGGVTYLRPFLGLRRTDMLDICDAETLTPWIDPTNTDETL 225

Query: 200 ERVRVRRFV 208
            R R+R  V
Sbjct: 226 MRARIRHSV 234


>gi|288800193|ref|ZP_06405652.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288333441|gb|EFC71920.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 444

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 25/213 (11%)

Query: 1   MFLSPIESV----RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           MFL  IE          ++ +Y    LVA+SGG+DS+ LL+ L  +  +       F   
Sbjct: 1   MFLRKIEQFIEQKELMSKNQLY----LVALSGGADSVALLLVLKRLGYNVEAAHCNF--- 53

Query: 57  SVDHCLRETAKDEVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
              H   E +  +  +  D+C     +L +AH       S     +  AAR  RY     
Sbjct: 54  ---HLRGEESDRDEDFCKDLCRELDIKLHLAHFDTQTNASLHGISIEMAARNLRYNYFEA 110

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K INA+ +  AH  DD  ET+ +   R     G G+ G+  T +   N  I RPFL  
Sbjct: 111 LLKDINASAVCVAHHKDDSAETLLLNLVR-----GTGIEGL--TGIKSKNNRIVRPFLCV 163

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           RR +I ++L Q+N S+  D SN  +  +R ++R
Sbjct: 164 RRNEIINYLEQQNQSFVTDSSNLVNDVQRNKIR 196


>gi|258513582|ref|YP_003189804.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777287|gb|ACV61181.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM
           771]
          Length = 473

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 14/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           IL+AVSGG DS+ +L  L  +  D     I      ++H  R E +  +  +V ++  R 
Sbjct: 24  ILLAVSGGPDSVAMLDVLFCLRHDLG---ISLHIAHLNHMFRGEESLGDAEFVRELAVRY 80

Query: 81  RIAHSV--VSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +  +V  ++  +   +TGL +  AAR  RY+ + E A   +A+ I  AH  DDQ ETV 
Sbjct: 81  NLPVTVRHINVPSFMEKTGLSSQPAARTVRYSFLDETAAQESASRIALAHHADDQAETVM 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G +G+   +    N +I RP L  +R+DI  +  ++N+ W  D SN  
Sbjct: 141 LHFLR-----GSGAAGLRGMLPVRDNFYI-RPMLCLKRQDIEDYCKKKNLRWRVDSSNLK 194

Query: 197 DRFERVRVRRFV 208
             + R ++R ++
Sbjct: 195 TDYRRNKIRMYL 206


>gi|168215140|ref|ZP_02640765.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens CPE str.
           F4969]
 gi|170713441|gb|EDT25623.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens CPE str.
           F4969]
          Length = 469

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR E+A  +  YV ++C  L
Sbjct: 21  VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    ++  + +       A RE RY    E     +   I  AH  +DQ ET+ 
Sbjct: 78  NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR+ R     G G+ G+         ++I RP L  RR++I  +    N++   D +N +
Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 192 EIYSRNKIR 200


>gi|168206867|ref|ZP_02632872.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens E str.
           JGS1987]
 gi|168211206|ref|ZP_02636831.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens B str. ATCC
           3626]
 gi|170661729|gb|EDT14412.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens E str.
           JGS1987]
 gi|170710765|gb|EDT22947.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens B str. ATCC
           3626]
          Length = 469

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR E+A  +  YV ++C  L
Sbjct: 21  VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    ++  + +       A RE RY    E     +   I  AH  +DQ ET+ 
Sbjct: 78  NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR+ R     G G+ G+         ++I RP L  RR++I  +    N++   D +N +
Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 192 EIYSRNKIR 200


>gi|169343171|ref|ZP_02864192.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens C str.
           JGS1495]
 gi|169298723|gb|EDS80799.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens C str.
           JGS1495]
          Length = 469

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR E+A  +  YV ++C  L
Sbjct: 21  VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    ++  + +       A RE RY    E     +   I  AH  +DQ ET+ 
Sbjct: 78  NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR+ R     G G+ G+         ++I RP L  RR++I  +    N++   D +N +
Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 192 EIYSRNKIR 200


>gi|209695834|ref|YP_002263764.1| tRNA(Ile)-lysidine synthase [Aliivibrio salmonicida LFI1238]
 gi|208009787|emb|CAQ80094.1| tRNA(Ile)-lysidine synthase [Aliivibrio salmonicida LFI1238]
          Length = 443

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 90/190 (47%), Gaps = 9/190 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + ++VA SGG DS+   + LH         ++   A+ V+H L E A +   +    C  
Sbjct: 18  SELVVAFSGGVDSV---VLLHLAAYYSKLHQLPCVAVYVNHGLSEHAVEWEVFCQSYCDS 74

Query: 80  LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           L I+  +     +  PQ  L   AREARY ++++H    N +L++T    DDQ+ET ++ 
Sbjct: 75  LGISLFIERVNLDIGPQQSLEEVAREARYDVLAKHIN--NHSLLLTGQHQDDQVETFFLA 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R       GLS M   I   +     RP L   R DI ++     + W ED SN D R
Sbjct: 133 LKR--GSGPAGLSSM-PVIAPFVTGRKCRPLLSTSRCDIEAYANVNQLKWVEDESNKDTR 189

Query: 199 FERVRVRRFV 208
           F+R  +R  V
Sbjct: 190 FDRNFLRHKV 199


>gi|261876168|ref|YP_697160.2| tRNA(Ile)-lysidine synthetase [Clostridium perfringens ATCC 13124]
 gi|281185487|sp|Q0TMI0|TILS_CLOP1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|255529904|gb|ABG82412.2| tRNA(Ile)-lysidine synthetase [Clostridium perfringens ATCC 13124]
          Length = 469

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR E+A  +  YV ++C  L
Sbjct: 21  VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    ++  + +       A RE RY    E     +   I  AH  +DQ ET+ 
Sbjct: 78  NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR+ R     G G+ G+         ++I RP L  RR++I  +    N++   D +N +
Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 192 EIYSRNKIR 200


>gi|95930473|ref|ZP_01313209.1| tRNA(Ile)-lysidine synthetase-like [Desulfuromonas acetoxidans DSM
           684]
 gi|95133513|gb|EAT15176.1| tRNA(Ile)-lysidine synthetase-like [Desulfuromonas acetoxidans DSM
           684]
          Length = 415

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 19/169 (11%)

Query: 49  GKIKFSAI--SVDHCLRETAKDEVRYVSDVCSRL-------RIAHSVVSWKNSKPQTGLM 99
           G+  F  +   +DH LR+ + D+  +V ++ +RL       R+    ++ +N   + GL 
Sbjct: 3   GQHHFDVVVAHLDHGLRDESADDALFVQELAARLDLRFFKRRVEVGGLAQRN---RWGLE 59

Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
            A REAR A +SE A  +   +I  AH  DDQ ETV M     +  +G G+ G+   + +
Sbjct: 60  EAGREARRAFLSEVADQVGGAVIALAHHRDDQSETVLM-----HLARGCGVGGLA-GMRW 113

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
               +I RP L   R +I +FL +  + W ED SN ++RF+R  +R  V
Sbjct: 114 QEGKYI-RPMLSICRNEINAFLQRHRLEWREDDSNRNERFKRNLIRHQV 161


>gi|300938597|ref|ZP_07153329.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 21-1]
 gi|300456443|gb|EFK19936.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 21-1]
          Length = 437

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C R ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQRWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|182626023|ref|ZP_02953786.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens D str.
           JGS1721]
 gi|177908730|gb|EDT71241.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens D str.
           JGS1721]
          Length = 469

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR E+A  +  YV ++C  L
Sbjct: 21  VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    ++  + +       A RE RY    E     +   I  AH  +DQ ET+ 
Sbjct: 78  NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR+ R     G G+ G+         ++I RP L  RR++I  +    N++   D +N +
Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 192 EIYSRNKIR 200


>gi|168218232|ref|ZP_02643857.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens NCTC 8239]
 gi|182379755|gb|EDT77234.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens NCTC 8239]
          Length = 469

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR E+A  +  YV ++C  L
Sbjct: 21  VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    ++  + +       A RE RY    E     +   I  AH  +DQ ET+ 
Sbjct: 78  NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR+ R     G G+ G+         ++I RP L  RR++I  +    N++   D +N +
Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 192 EIYSRNKIR 200


>gi|157159653|ref|YP_001456971.1| tRNA(Ile)-lysidine synthetase [Escherichia coli HS]
 gi|209917378|ref|YP_002291462.1| tRNA(Ile)-lysidine synthetase [Escherichia coli SE11]
 gi|218552769|ref|YP_002385682.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI1]
 gi|218693653|ref|YP_002401320.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 55989]
 gi|307311364|ref|ZP_07591006.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W]
 gi|331666429|ref|ZP_08367310.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA271]
 gi|331680767|ref|ZP_08381426.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H591]
 gi|157065333|gb|ABV04588.1| tRNA(Ile)-lysidine synthase [Escherichia coli HS]
 gi|209910637|dbj|BAG75711.1| cell cycle protein [Escherichia coli SE11]
 gi|218350385|emb|CAU96068.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 55989]
 gi|218359537|emb|CAQ97075.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI1]
 gi|306908343|gb|EFN38841.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W]
 gi|315059406|gb|ADT73733.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W]
 gi|323380035|gb|ADX52303.1| tRNA(Ile)-lysidine synthetase [Escherichia coli KO11]
 gi|323945665|gb|EGB41714.1| PP-loop family protein [Escherichia coli H120]
 gi|324017845|gb|EGB87064.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 117-3]
 gi|324118308|gb|EGC12203.1| PP-loop family protein [Escherichia coli E1167]
 gi|331066640|gb|EGI38517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA271]
 gi|331072230|gb|EGI43566.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H591]
          Length = 432

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|18311454|ref|NP_563388.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens str. 13]
 gi|61216685|sp|Q8XHL1|TILS_CLOPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|18146138|dbj|BAB82178.1| probable cell-cycle protein [Clostridium perfringens str. 13]
          Length = 469

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR E+A  +  YV ++C  L
Sbjct: 21  VLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    ++  + +       A RE RY    E     +   I  AH  +DQ ET+ 
Sbjct: 78  NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR+ R     G G+ G+         ++I RP L  RR++I  +    N++   D +N +
Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLNPRIDETNLE 191

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 192 EIYSRNKIR 200


>gi|191167023|ref|ZP_03028845.1| tRNA(Ile)-lysidine synthase [Escherichia coli B7A]
 gi|300816228|ref|ZP_07096451.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 107-1]
 gi|300923020|ref|ZP_07139087.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 182-1]
 gi|309796365|ref|ZP_07690774.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 145-7]
 gi|190902916|gb|EDV62643.1| tRNA(Ile)-lysidine synthase [Escherichia coli B7A]
 gi|300420647|gb|EFK03958.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 182-1]
 gi|300531435|gb|EFK52497.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 107-1]
 gi|308120069|gb|EFO57331.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 145-7]
          Length = 432

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|301330010|ref|ZP_07222697.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 78-1]
 gi|300843964|gb|EFK71724.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 78-1]
          Length = 432

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|323190412|gb|EFZ75687.1| tRNA(Ile)-lysidine synthase [Escherichia coli RN587/1]
          Length = 432

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADVWVIH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSAFAGTQLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|324014127|gb|EGB83346.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 60-1]
          Length = 437

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++
Sbjct: 7   RQLLSSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + +    V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQGPLGVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|255534562|ref|YP_003094933.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255340758|gb|ACU06871.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 434

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 91/200 (45%), Gaps = 21/200 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78
           A  L+AVSGG DSM LL          S   ++F    V++ LR    D + R V + C+
Sbjct: 21  ARYLLAVSGGVDSMVLLYLF-------SHSNLEFEVAHVNYRLRGVDSDADQRIVEEFCA 73

Query: 79  RLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +  +   V  V   + KP   +   ARE RY    +     +   I+TAH  +DQLET  
Sbjct: 74  KHHLTLHVYEVGDHDGKPANSVQLWARELRYGFFRKIQIQSDLQYIVTAHHLNDQLETFI 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R  A    GLSG+           I RP L   + DI  F  QR+I + ED SN+ 
Sbjct: 134 INLSR--ASGLNGLSGIPSN-----ENGILRPLLNFTKNDIYDFAAQRSIQFGEDVSNSK 186

Query: 197 DRFERVRVRRFVRDIDLHAL 216
           + +    +R F+R+   H L
Sbjct: 187 NDY----LRNFIRNEIAHRL 202


>gi|303240184|ref|ZP_07326704.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2]
 gi|302592275|gb|EFL62003.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2]
          Length = 465

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 136/303 (44%), Gaps = 50/303 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++V VSGG DS+ LL  L  +  D     +   A+ ++H LR  E+ +DE  YV  +CS 
Sbjct: 21  VVVGVSGGPDSVCLLHVLWRLRKDFD---LYIVAVHINHMLRGSESCRDE-NYVKSLCSE 76

Query: 80  LRIAHSVVS---WKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I    +     K SK +   L  A RE RY      A ++ A+ I  AH  +DQ ETV
Sbjct: 77  LEIELQSICVDIKKVSKEKNMSLEEAGREERYRHFEIVADSVGASRIAVAHNKNDQAETV 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            M   R     G GL G+   + Y +   I RP L   R +I ++  + +++   D SN 
Sbjct: 137 LMNIIR-----GSGLDGL-KGMDY-IRGRIIRPLLDIERNEIEAYCRENSLNPITDSSNL 189

Query: 196 DDRFERVRVR-------------RFVRDID-LHALYLKMKKFQDLRV----------KVN 231
           +D + R ++R              FV+ +D L+ L      F D ++          K N
Sbjct: 190 EDIYSRNKIRLNVIPYIDTLFGCNFVKSVDRLNRLVKDDIDFIDGKIKKSYYAAVLRKEN 249

Query: 232 NAVAMLIPKYLTVHM---RSII--AISQDILNIDSTLLFYLLRVSAAI----CGGQISLP 282
             V +L+ K   +H+   R II  AI++   N+      ++ RV   I     G ++ LP
Sbjct: 250 EEVELLLGKIKKMHIAVKRRIIRKAINEVKGNVKGIESLHIERVLNMIDNGRVGSRLDLP 309

Query: 283 GYR 285
           G +
Sbjct: 310 GIK 312


>gi|257877908|ref|ZP_05657561.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257812074|gb|EEV40894.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 466

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 5/187 (2%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            L+AVS G DSM LL     +  +    +  F    V+H LR  +  E  ++   C    
Sbjct: 21  FLLAVSTGVDSMVLLQIFCQLFPEMQ-KEPCFGVAHVNHQLRPASAKEAAFLRQYCQERG 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I      W+N  P+TG+ A+AR  RY   ++        +++TAH  DDQ+ET+ M+  R
Sbjct: 80  IPFYERCWENP-PETGVEASARNFRYTFFADVMSQEGYDVLLTAHHSDDQVETMLMKMMR 138

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           +   +  G  GM     +   + + RP L   +  I  +   + I + ED SN +  + R
Sbjct: 139 EGRLRSAG--GMKQQQPFHTGILL-RPLLTVSKAAIYDYAQAQQIPYFEDESNHEPLYLR 195

Query: 202 VRVRRFV 208
            R+R+ V
Sbjct: 196 NRLRQQV 202


>gi|157165572|ref|YP_001467030.1| ATP/GTP hydrolase [Campylobacter concisus 13826]
 gi|112800063|gb|EAT97407.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           concisus 13826]
          Length = 330

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 22/188 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL-- 80
           L+A S G DS  L   L           +KF  + VDH +RE +K EV    ++ S+   
Sbjct: 16  LLAFSHGIDSTALFYILKET-------GVKFDLVIVDHNVREQSKFEVESAKELASKFGK 68

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I    V+   S  +      AREARY   SE  +      ++ AH FDD+ E   M+  
Sbjct: 69  KIYVKSVNLAGSNFEKN----AREARYEFFSEICQKFGYENLILAHQFDDKFEWFLMQ-- 122

Query: 141 RDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                KG GL    GM +    + + W+ RP L  R+++++++L +R + +  D +N + 
Sbjct: 123 ---LGKGAGLKELFGMSELEKRE-HFWLVRPLLNLRKKELQNYLDERGLRYFVDETNLEG 178

Query: 198 RFERVRVR 205
           + +R  VR
Sbjct: 179 KLKRSFVR 186


>gi|82775579|ref|YP_401926.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae Sd197]
 gi|81239727|gb|ABB60437.1| cell cycle protein [Shigella dysenteriae Sd197]
          Length = 431

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVVLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|222111278|ref|YP_002553542.1| tRNA(ile)-lysidine synthetase [Acidovorax ebreus TPSY]
 gi|221730722|gb|ACM33542.1| tRNA(Ile)-lysidine synthetase [Acidovorax ebreus TPSY]
          Length = 335

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 26/213 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA+SGG+DS  LL+A     + R  G++   A  V H L+  A    ++   +C RL 
Sbjct: 18  LAVALSGGADSTALLLAC----AARWPGQV--VAFHVHHGLQAAADGFEQHCVALCERLG 71

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISE-----HAKTINATLIMTAHTFDDQLET 134
           I   V  V  +++  Q+    AAR+ RY           A+    T+ +  H  DDQ+ET
Sbjct: 72  IPLWVRRVDARHAAGQSP-EDAARQVRYKAFEALALDCQAQAAIKTIALAQHA-DDQVET 129

Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           + +   R     G G++G+           +   RP LR    D+R++L+ R+  W EDP
Sbjct: 130 LLLALSR-----GAGVAGLAAMPAQWQRAGMDWCRPLLRVAGADVRAWLVARDERWVEDP 184

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
           +N D+RF R R+RR +    L AL     +F+D
Sbjct: 185 TNADERFTRNRIRRQL----LPALQQAFPQFRD 213


>gi|51599039|ref|YP_073227.1| hypothetical protein BG0813 [Borrelia garinii PBi]
 gi|61216476|sp|Q65ZY6|TILS_BORGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51573610|gb|AAU07635.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 440

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNN------IVAFYFAHFIRTDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  V    +  K+   + G  +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   G+ G+   I+        RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGLSGIPGVNKNII--------RPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NIS+  D +N  D + R RVR
Sbjct: 180 LSLNNISFFVDSTNAQDLYLRNRVR 204


>gi|27904608|ref|NP_777734.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396403|sp|Q89AX3|TILS_BUCBP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|27904005|gb|AAO26839.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 438

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 156/342 (45%), Gaps = 55/342 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +IL+A SGG DS    +    +   ++     F AI ++H L   ++      SD C ++
Sbjct: 13  NILLAYSGGIDST--FLLYQLLKLKKNNLNFTFRAIHINHQLHPDSEK----WSDHCKKI 66

Query: 81  RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I H++         +  +  +   AR+ RY  I +  K     ++ T H  +DQ ET+ 
Sbjct: 67  CINHNIPIIIKKITINSNKNRIEEIARKKRYQAIYKIIKP--KEVLATGHNLNDQCETML 124

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           +  +R     G G++G+  ++ Y LN    + I RP L+  REDI++++ +  I W ED 
Sbjct: 125 LALKR-----GSGITGL-SSMSYKLNTIYKIKIVRPLLKISREDIKTWIYKHKIHWIEDT 178

Query: 193 SNTDDRFERVRVRRFV----------------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           SN D + +R  +R  +                R I++  +  K+ K Q+++ K+N     
Sbjct: 179 SNNDTKHDRNFLRLNIIPKLKNRWPYFEKNCSRSIEILNIEKKILK-QEIKKKLN----- 232

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLF 293
              KYL   + SI+ IS +   ID  +   +LR    I   Q ++P ++ ++ +   ++F
Sbjct: 233 ---KYLV--LNSILNIS-NFRYIDKNICSIILRHWIKI--NQNTMPTFKIVKEIYNKVIF 284

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335
            K   +  + I    I R  N L+ T+ +  +  +IL    T
Sbjct: 285 SKIDSQPKIIIKNYQIRRYNNHLYWTKKIPRIENIILIWNNT 326


>gi|260775269|ref|ZP_05884166.1| tRNA(Ile)-lysidine synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608450|gb|EEX34615.1| tRNA(Ile)-lysidine synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 444

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 8/187 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A+SGG DS  LL  +     +     +   A+ V H L   A D        CS   
Sbjct: 21  LVLALSGGLDSRVLLSLMARYCREHQQEGL---AVHVHHGLSSNADDWAEQCKQWCSEDG 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I  ++      K    +  +AREARY  +S++    +  L++T    DDQ ET  +  +R
Sbjct: 78  IPFNLERVTLEKSGKSIEESAREARYQALSKYVSKED--LLLTGQHSDDQFETFLLALKR 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG  LS M   + +   L + RP L   R D++++ +   + W ED SN D RF+R
Sbjct: 136 GSGPKG--LSAMAQAMSFGEAL-LVRPLLAVSRSDVKAYAVAEQLQWVEDESNQDTRFDR 192

Query: 202 VRVRRFV 208
             +R  V
Sbjct: 193 NFIRHQV 199


>gi|221068471|ref|ZP_03544576.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni KF-1]
 gi|220713494|gb|EED68862.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni KF-1]
          Length = 334

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 98/198 (49%), Gaps = 26/198 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG+DS  LL+A H+    R  G+++  AI V H L+  A    ++   +C+R  
Sbjct: 30  LAVAFSGGADSSALLLACHA----RWPGQVR--AIHVHHGLQSAADGFQQHCEQLCARHG 83

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKT---------INATLIMT-AHTFD 129
           IA  V  +  +N + Q+    AAR+ RYA + + A           ++A   M  A   D
Sbjct: 84  IALKVCAIDARNVQGQS-PEDAARQGRYAALIQAAGQPWLAADGAPLDAVRSMALAQHAD 142

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNIS 187
           DQ+ET+ +   R     G G++G+     +     L   RP L    + +R +L  R +S
Sbjct: 143 DQVETLLLALSR-----GAGVAGLAAMPGHWQRAGLQWFRPLLAVPGQALRDWLRLRGLS 197

Query: 188 WCEDPSNTDDRFERVRVR 205
           W EDP+NTD  + R R+R
Sbjct: 198 WVEDPTNTDQGYTRNRIR 215


>gi|225022109|ref|ZP_03711301.1| hypothetical protein CORMATOL_02142 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945042|gb|EEG26251.1| hypothetical protein CORMATOL_02142 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 301

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 100/211 (47%), Gaps = 28/211 (13%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAK 67
           +R  VR+L     +L+ +SGG+DS+GL+ A  +   D         A+ VDH L+ ++A 
Sbjct: 19  LRRAVRALASEDPVLIGLSGGADSLGLVAAALAEGRD-------VLALCVDHGLQPDSAT 71

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTINATLIMTAH 126
              R V+   S    A SV   K       + A AREARY AL++  A    +  +  AH
Sbjct: 72  VADRAVAMARSLGAEARSV---KVQVKPGNIEAQAREARYKALMT--AAAAESRSVWVAH 126

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ET  + S R  A  GM +SG            + RPFL  RR D  +   +  +
Sbjct: 127 TMDDQAETYLLGSLRGRA-VGMPVSGT-----------VIRPFLSVRRADTVAACAELGL 174

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI--DLHA 215
               DP N D RF RVRVR  V  +  D+H 
Sbjct: 175 EVWHDPMNADPRFRRVRVRTEVLPLLADIHG 205


>gi|213852724|ref|ZP_03382256.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 311

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 7/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GLS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 132 --GSGPAGLSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 188


>gi|149926802|ref|ZP_01915061.1| transcriptional regulator, GntR family protein [Limnobacter sp.
           MED105]
 gi|149824354|gb|EDM83572.1| transcriptional regulator, GntR family protein [Limnobacter sp.
           MED105]
          Length = 330

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 11/198 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F R    PA  +VA SGG DS  LL ALH +        +   A+ V+H ++  A     
Sbjct: 12  FNRHAPTPACFVVAYSGGVDSTVLLHALHVM-------GLPLHAVHVNHQIQTQADAWEA 64

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +    C +  +  + +  K     +GL   AR  RY  I    K     +++ AH  DDQ
Sbjct: 65  HCKSQCEQWGVPFTALRVKVEPSDSGLEGQARVERYRAIFNWMKANQHHVLLCAHHRDDQ 124

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNIS 187
           LETV ++  R    +G+G       +  D +L     + RP L C +  +  +  +  + 
Sbjct: 125 LETVLLQLLRGSGLRGVGGMRAVGPVGVDRHLHPELLLCRPLLNCSKPSLLDYARENRLQ 184

Query: 188 WCEDPSNTDDRFERVRVR 205
             EDPSN D    R  VR
Sbjct: 185 HIEDPSNHDTALRRNWVR 202


>gi|56961886|ref|YP_173608.1| cell-cycle protein [Bacillus clausii KSM-K16]
 gi|61216430|sp|Q5WAE0|TILS_BACSK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56908120|dbj|BAD62647.1| cell-cycle protein [Bacillus clausii KSM-K16]
          Length = 469

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE+ R F        ++LVAVSGG DSM LL  + ++   R   K+    + V+H LR E
Sbjct: 9   IENNRLFGME----TNVLVAVSGGPDSMALLAIMANL---REKWKLNLFGVHVNHRLRGE 61

Query: 65  TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +   V    +RL +  +V    V+   ++   G   AAR  RY +     + ++AT
Sbjct: 62  ESNKDAELVQSFSARLGVPCNVKDVDVAAFKAEHHVGTQQAARALRYQVFQGEMERVHAT 121

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DD++ET +M+  R      +   G+  T  +  N  ++RP L   +  I ++
Sbjct: 122 VLLTAHHGDDEVETAFMKLTR--GTTPLTKLGIAATRPF-ANGVLARPLLEETKRSIVAY 178

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
             ++ I +  D SN  D + R R R
Sbjct: 179 CHEKAIPYRIDQSNFSDAYTRNRFR 203


>gi|28209970|ref|NP_780914.1| cell cycle protein mesJ [Clostridium tetani E88]
 gi|61216641|sp|Q899H5|TILS_CLOTE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28202405|gb|AAO34851.1| cell cycle protein mesJ [Clostridium tetani E88]
          Length = 467

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V VSGG DSM LL  L+ +  + +   I   A  ++HCLR + A ++ +YV + C + 
Sbjct: 21  IIVGVSGGPDSMCLLHILYRLRDEYNLNII---AAHINHCLRGKDADNDEKYVENFCKKY 77

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I        V     K       A RE RY   ++     N   I  AH  +DQ ET+ 
Sbjct: 78  DIDFYSTKIDVGKLAKKENISFEVAGRECRYDFFNKLKLKFNCDKIALAHNSNDQCETIL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G G+ G+        N++I RP +   R+ I  +  +  +    D +N +
Sbjct: 138 MRIMR-----GTGIEGLAGIKAIRDNIYI-RPIIEASRKQIEDYCEEHELEARIDKTNLE 191

Query: 197 DRFERVRVR 205
             + R +VR
Sbjct: 192 SIYARNKVR 200


>gi|293418073|ref|ZP_06660695.1| tilS [Escherichia coli B185]
 gi|291430791|gb|EFF03789.1| tilS [Escherichia coli B185]
          Length = 431

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPCEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELVQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|258627367|ref|ZP_05722151.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM603]
 gi|258580405|gb|EEW05370.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM603]
          Length = 440

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 19/204 (9%)

Query: 12  FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65
           FV+ L  YP   LV A+SGG DS  LL  L       + G+ +F     A+ V H L   
Sbjct: 8   FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   V+     C    I+  +   + +      +   AREARY  +S+H  +   TL++ 
Sbjct: 61  ADQWVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQHVGS--DTLLLL 118

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
               DDQLET  +  +R    KG  LS M     +     ++RP L   R+DI ++ +Q+
Sbjct: 119 GQHADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQGH-LARPLLTVSRQDIEAYAMQK 175

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
            +SW  D SN D R+ER  +R  +
Sbjct: 176 KLSWVTDESNLDTRYERNFLRHHI 199


>gi|270290204|ref|ZP_06196430.1| tilS/hprT [Pediococcus acidilactici 7_4]
 gi|270281741|gb|EFA27573.1| tilS/hprT [Pediococcus acidilactici 7_4]
          Length = 457

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 13/190 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A ++VAVS G DS  L+ AL   L+  +  + +     V+H LR  +  E  ++   C++
Sbjct: 20  APVIVAVSTGVDSTVLINAL---LAATNLAENRLIIAHVNHQLRSQSVQEEDFLRQWCAK 76

Query: 80  LRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            R+      W +   P TG+ AAAR  RY   ++  +  NAT ++TAH   +Q E+  M+
Sbjct: 77  RRLMFVSTKWPRELHPDTGVEAAARRFRYDFFAKVMQRYNATTLLTAHNATEQAESFLMQ 136

Query: 139 SQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R     G  LS   G  +   +     + RPFL+  +  + +   + +++W ED +N 
Sbjct: 137 VVR-----GGWLSQLRGTPEERSFATGRLV-RPFLKISKPTLVALAQENHLTWFEDETNQ 190

Query: 196 DDRFERVRVR 205
            D + R RVR
Sbjct: 191 QDDYLRNRVR 200


>gi|163789070|ref|ZP_02183514.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1]
 gi|159875734|gb|EDP69794.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1]
          Length = 439

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 25/198 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
            + +L+A+SGG DS+ L    H         ++ F+    +  LR E +  +  +V ++ 
Sbjct: 18  ESKLLIAISGGIDSVVLAHLCHQF-------QLNFTLAHCNFNLRGEESNADEDFVLELA 70

Query: 78  SRLRIAHSVVSWKNSKPQT-------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L +    V  +N   QT        +  AARE RY   +E A+ +    I+TAH  DD
Sbjct: 71  DQLNVE---VFIQNFDTQTYADENKRSIQMAARELRYDWFTELAEQLKFDYILTAHHADD 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET  +   R     G GL+G+  T + ++N  I RP L+  RE I S+  +  I W E
Sbjct: 128 NLETFLINFTR-----GTGLNGL--TGIPEINDNIVRPLLQFSREQIESYANENAIKWRE 180

Query: 191 DPSNTDDRFERVRVRRFV 208
           D SN+  ++ R ++R  V
Sbjct: 181 DSSNSSRKYLRNKLRHEV 198


>gi|301646513|ref|ZP_07246387.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 146-1]
 gi|301075266|gb|EFK90072.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 146-1]
          Length = 432

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  +  Q ++ W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELVQWARQYDLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|323701590|ref|ZP_08113262.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM
           574]
 gi|323533363|gb|EGB23230.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM
           574]
          Length = 475

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 97/209 (46%), Gaps = 17/209 (8%)

Query: 6   IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E VR  +    +V P   ++V VSGG DS+ LL  L+ +   R    I      ++H  
Sbjct: 4   LEKVRAEIIRHKMVQPGDLVVVGVSGGPDSVALLHVLYCL---RDELGISLHVAHLNHMF 60

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R E A+++  +V D+ ++L I  +V    V     K       AAREARY    +  +  
Sbjct: 61  RGEEAEEDASFVQDLAAKLGIPCTVEERDVPAYARKNHLSSEVAAREARYRFFRDVLQAT 120

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + +  AH  DDQ E V M   R     G GL G+         ++I RP L  RR+DI
Sbjct: 121 GGSKLALAHHADDQAELVLMNILR-----GTGLKGLSGMWPVRDQVYI-RPMLEVRRKDI 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRR 206
             +    N+S+  D SN  + + R R+R+
Sbjct: 175 EQYCHDHNLSFRIDSSNLKNIYLRNRIRQ 203


>gi|307136788|ref|ZP_07496144.1| tRNA(Ile)-lysidine synthetase [Escherichia coli H736]
 gi|331640642|ref|ZP_08341790.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H736]
 gi|331040388|gb|EGI12595.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H736]
          Length = 432

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  +  Q ++ W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELVQWARQYDLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|261380143|ref|ZP_05984716.1| tRNA(Ile)-lysidine synthase [Neisseria subflava NJ9703]
 gi|284796980|gb|EFC52327.1| tRNA(Ile)-lysidine synthase [Neisseria subflava NJ9703]
          Length = 441

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 139/324 (42%), Gaps = 36/324 (11%)

Query: 19  PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P H +  V +SGG DS+ LL  LH +   R F      A+ V H L   A    ++  D 
Sbjct: 21  PNHTVFEVGLSGGLDSVVLLHLLHRM---REFRHFDLRAVHVHHGLSTNADSWAKFCQDY 77

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C RL +A  V          GL AAAR ARY   S+  + I    I+ AH  +DQ+ET  
Sbjct: 78  CQRLDVALRVCRVNVQNQGKGLEAAARAARYQAFSDGLRKI----IVLAHHHNDQIETFM 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           + + R    +GM    +   +  ++ +W  RP L   R+++  +  Q  +S+ ED SN D
Sbjct: 134 LSAVRGGGLRGMAAMPVWRNLNEEIQIW--RPLLAFSRQELAEYAQQWGLSFVEDESNED 191

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN---------NAVAMLIPKYLTVHMR 247
             +    +R ++R+  L     ++  F+  ++  N             ++  +Y  +   
Sbjct: 192 SGY----LRNWMRNQALPQWQQRIPNFEQ-QICANVRLLQEDLQLLDELIESEYQRISPN 246

Query: 248 SIIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
            I +IS   Q    +   LL+Y LR          SLP Y S+      L++  +  +++
Sbjct: 247 GIFSISLWRQCTPLLRRRLLWYFLRKQTE------SLPSYHSIADFARVLETADQAQLNL 300

Query: 305 --GRVVIDRRANFLWITRAVRNLP 326
             G +V  R   F+      + LP
Sbjct: 301 PDGELVAYRDKLFVCQESEFQKLP 324


>gi|16128181|ref|NP_414730.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89107068|ref|AP_000848.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170079824|ref|YP_001729144.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238899586|ref|YP_002925382.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BW2952]
 gi|256025500|ref|ZP_05439365.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 4_1_40B]
 gi|300949778|ref|ZP_07163753.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 116-1]
 gi|300956073|ref|ZP_07168397.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 175-1]
 gi|301028683|ref|ZP_07191903.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 196-1]
 gi|1708989|sp|P52097|TILS_ECOLI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|971394|emb|CAA90751.1| mesJ [Escherichia coli]
 gi|1122208|dbj|BAA08428.1| YaeN [Escherichia coli W3110]
 gi|1552765|gb|AAB08617.1| hypothetical [Escherichia coli]
 gi|1786386|gb|AAC73299.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|4902929|dbj|BAA77863.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K12 substr.
           W3110]
 gi|47230786|tpd|FAA00003.1| TPA: tRNA-Ile lysidine synthetase [Escherichia coli]
 gi|169887659|gb|ACB01366.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238863712|gb|ACR65710.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BW2952]
 gi|260450609|gb|ACX41031.1| tRNA(Ile)-lysidine synthetase [Escherichia coli DH1]
 gi|299878282|gb|EFI86493.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 196-1]
 gi|300317067|gb|EFJ66851.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 175-1]
 gi|300450843|gb|EFK14463.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 116-1]
 gi|315134878|dbj|BAJ42037.1| tRNA(Ile)-lysidine synthetase [Escherichia coli DH1]
 gi|315616327|gb|EFU96945.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 3431]
 gi|323939936|gb|EGB36134.1| PP-loop family protein [Escherichia coli E482]
 gi|332341521|gb|AEE54855.1| tRNA(Ile)-lysidine synthetase TilS [Escherichia coli UMNK88]
          Length = 432

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  +  Q ++ W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELVQWARQYDLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|296134924|ref|YP_003642166.1| tRNA(Ile)-lysidine synthetase [Thiomonas intermedia K12]
 gi|295795046|gb|ADG29836.1| tRNA(Ile)-lysidine synthetase [Thiomonas intermedia K12]
          Length = 350

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG+DS  LL+A  ++     +G  +  A+ V+H L+ +A+   ++ +  C+ L 
Sbjct: 47  IGIAFSGGADSTALLLAARTL-----WGGGRLCALHVNHGLQTSAQLFAQHCAQACAALD 101

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +A++  + + +      L   AREARY  +++ A+  N  +++ A   DDQ+ET+ +   
Sbjct: 102 VAYAEATLQVDVARGQSLEEVAREARYLALAKLAREQNCAVVLLAQHGDDQVETLLLALL 161

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G  L+ M    +       +RP L C   ++RS+L  + +S+ +DP N D  F 
Sbjct: 162 RGAGPRG--LAAM-PAQMQRHGCSFARPLLDCGAAELRSWLKSQAVSFLDDPMNADPAFR 218

Query: 201 RVRVR 205
           R R+R
Sbjct: 219 RSRIR 223


>gi|227552665|ref|ZP_03982714.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330]
 gi|257897412|ref|ZP_05677065.1| PP-loop family protein [Enterococcus faecium Com12]
 gi|227178194|gb|EEI59166.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330]
 gi|257833977|gb|EEV60398.1| PP-loop family protein [Enterococcus faecium Com12]
          Length = 481

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL AVSGG DSM LL  L  + + R  G      + ++H LRE + +E  Y+   C +  
Sbjct: 33  ILAAVSGGVDSMVLLHLL--LQAQRQIG-FSLGVVHINHQLREESAEEAAYLRSYCEKKN 89

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V  W+N   +T +  AAR  RY   +   +      +MTAH  DDQ+ETV M+  R
Sbjct: 90  LPLYVSVWENP-AKTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGDDQIETVLMKIIR 148

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +    SG+     +     + RP L   +E++ ++  +  + + ED +N     +R
Sbjct: 149 --GGQLSTFSGIKGVQPFATGRLV-RPLLSFSKEELYAYAAESQLVYFEDQTNQLLDVQR 205

Query: 202 VRVRRFV 208
            R+R  V
Sbjct: 206 NRLRHLV 212


>gi|46446273|ref|YP_007638.1| hypothetical protein pc0639 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|61216530|sp|Q6MDI6|TILS_PARUW RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|46399914|emb|CAF23363.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 458

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 7/207 (3%)

Query: 3   LSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           L+ I  V+ F++        +L+A+SGG+DS+ L   L   L+ R  G + F    VDH 
Sbjct: 11  LNVINQVKRFIKKYCKSTQPLLLALSGGADSLSLFYCL---LACRLEGILSFHVAHVDHG 67

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            RE +  E   + ++  + ++ +  +    S+    L  A R+ R     E     N   
Sbjct: 68  WREESAKEATILKNLAEQHQVPYHQLKIDLSQLAGNLEDACRKQRQKFFKEICLQNNLQA 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +   H  +DQ+ETV  R             G+ + + +D  +   RP L  ++++I +FL
Sbjct: 128 VCLGHQENDQVETVLKRILE--GSHWSHFDGLKERMWHD-QVQFLRPLLGIQKDEILAFL 184

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
               +   ED +N D+RF R R+RR +
Sbjct: 185 KGNQLKAFEDGTNCDERFMRARMRRTI 211


>gi|169797140|ref|YP_001714933.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE]
 gi|169150067|emb|CAM87961.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE]
          Length = 467

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 17/186 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DSM LL  +  +         K  AI +DH L++ + +    V+   + L I
Sbjct: 34  LIGCSGGMDSMLLLHLMAQIFPQ------KIRAIYIDHQLQDQSAEWAEVVATQATILNI 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            + +   K       L A AR+ARY    +H +     +++ AH   DQ ETV +R    
Sbjct: 88  PYIIQ--KVQIANGNLEAQARQARYQAYQQHLQ--ENEILLLAHHQQDQAETVILR---- 139

Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               G G+ G+     I Y  ++ I RPFL   RE I  +  Q  + + +DP N D+ ++
Sbjct: 140 -LLSGAGVDGLAAMQAIDYRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYD 198

Query: 201 RVRVRR 206
           RV  R 
Sbjct: 199 RVWCRE 204


>gi|165976971|ref|YP_001652564.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|190150871|ref|YP_001969396.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264222|ref|ZP_07545813.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|226695531|sp|B3GYM3|TILS_ACTP7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695532|sp|B0BRD5|TILS_ACTPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|165877072|gb|ABY70120.1| probable cell-cycle protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189916002|gb|ACE62254.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870468|gb|EFN02221.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 419

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 152/348 (43%), Gaps = 36/348 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + ++ +SGG DS+ LL  L  +  +         A+ + H L   A +   +   VC RL
Sbjct: 19  NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADNWAAFCEQVCKRL 71

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AR ARY  I E  +  N  L+ TAH  DDQ ET  +  +
Sbjct: 72  KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M   + +  N  I RP L   +  I  + LQ+  +W ED SN D  ++
Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R+  L  +  + + F  +  +     A   ML+ + L   ++     S+  L
Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241

Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308
           NI++   F       L+R+    CG Q  +P    + +++   ++    K   + +    
Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299

Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLI 352
           + R  + L++T  +   P     P    +  T+ DG  + Q+L DS+I
Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSII 346


>gi|218547643|ref|YP_002381434.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ATCC 35469]
 gi|218355184|emb|CAQ87791.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ATCC 35469]
          Length = 432

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVMH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C +  +   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICHQWHVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|219684916|ref|ZP_03539857.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii PBr]
 gi|219671654|gb|EED28710.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii PBr]
          Length = 440

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNN------IVAFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAA--AREARYALISEHAKTINATL 121
            E+ +V   C    IA  V    +  K+   + G+     AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGISIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GLSG+       +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIPG-----VNRNIIRPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NIS+  D +N  D + R RVR
Sbjct: 180 LSLNNISFFVDSTNAQDLYLRNRVR 204


>gi|160874614|ref|YP_001553930.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS195]
 gi|160860136|gb|ABX48670.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS195]
 gi|315266855|gb|ADT93708.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS678]
          Length = 491

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 8/190 (4%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +SL     +++A SGG DS  L   L      R   +  +  + V H L + A    ++
Sbjct: 24  AQSLAPDCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFHYQLVYVHHGLSDNADSWAQH 81

Query: 73  VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +      +  +V     N  P+  L A AR+ RY  I  H    +  +++TAH  DDQ
Sbjct: 82  CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHEDDQ 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET+ +  +R    KG+   G    +     L   RP L   RE I ++  Q+ +   ED
Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196

Query: 192 PSNTDDRFER 201
            SN DD+++R
Sbjct: 197 ESNQDDKYDR 206


>gi|257888633|ref|ZP_05668286.1| PP-loop family protein [Enterococcus faecium 1,141,733]
 gi|293378830|ref|ZP_06624985.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1]
 gi|257824687|gb|EEV51619.1| PP-loop family protein [Enterococcus faecium 1,141,733]
 gi|292642371|gb|EFF60526.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1]
          Length = 484

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 7/187 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL AVSGG DSM LL  L  + + R  G      + ++H LRE + +E  Y+   C +  
Sbjct: 36  ILAAVSGGVDSMVLLHLL--LQAQRQIG-FSLGVVHINHQLREESAEEAAYLRSYCEKKN 92

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V  W+N   +T +  AAR  RY   +   +      +MTAH  DDQ+ETV M+  R
Sbjct: 93  LPLYVSVWENP-AKTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGDDQIETVLMKIIR 151

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +    SG+     +     + RP L   +E++ ++  +  + + ED +N     +R
Sbjct: 152 --GGQLSTFSGIKGVQPFATGRLV-RPLLSFSKEELYAYAAESQLVYFEDQTNQLLDVQR 208

Query: 202 VRVRRFV 208
            R+R  V
Sbjct: 209 NRLRHLV 215


>gi|332520627|ref|ZP_08397089.1| tRNA(Ile)-lysidine synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332043980|gb|EGI80175.1| tRNA(Ile)-lysidine synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 438

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 32/241 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSD 75
           A IL+AVSGG DS+ +L  L S L+           I++ HC   LRE   D +  +V +
Sbjct: 19  AKILIAVSGGLDSV-VLTHLCSKLN---------LNIALAHCNFNLRENESDTDEAFVLE 68

Query: 76  VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +   L I   V  +         ++ +  AAR  RY    + A+ +    I+TAH  DD 
Sbjct: 69  LAKTLDIEAFVQHFNTEAYAKAEKSSIQMAARTLRYNWFFDLARQLQFDYILTAHHADDN 128

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LETV +   R     G G+ G+  T + + N  I RP L+  RE +  +   +NI+W ED
Sbjct: 129 LETVLINLTR-----GTGIEGL--TGIPERNENIVRPLLKFSRESLEYYAKSKNIAWRED 181

Query: 192 PSNTDDRFERVRVRRFV----RDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            SN   ++ R ++R  V    ++I+   L  +   +   +D +  V  +V+ ++ + +  
Sbjct: 182 SSNASTKYLRNKLRHDVIPILKEINPTLLKNVETTLDNLKDTKAIVQESVSAVLKRAIIQ 241

Query: 245 H 245
           H
Sbjct: 242 H 242


>gi|302038048|ref|YP_003798370.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii]
 gi|300606112|emb|CBK42445.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii]
          Length = 461

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 14/187 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRI 82
           +AVSGG DS+ LL  LH +        +  + +  ++ LR    D +  +V+ +C RL +
Sbjct: 1   MAVSGGPDSVALLSILHQLAP---AWNLLLTVVHCNYGLRGAESDGDASFVAALCRRLEL 57

Query: 83  AHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              +    V  + +   + L A AREARY L  +    + A  +   HT DDQ ETV +R
Sbjct: 58  PCHIRRLTVDRRGTGESSSLQARAREARYRLFRDVVVELGADRVALGHTADDQAETVLLR 117

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G GL G+        +L++ RP L   R++I ++L    +S+  D SN    
Sbjct: 118 MLR-----GTGLRGLAGMPHIRESLFV-RPLLSRSRQEILAYLQAVGLSYRTDSSNAKSI 171

Query: 199 FERVRVR 205
           + R RVR
Sbjct: 172 YLRNRVR 178


>gi|163783225|ref|ZP_02178219.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881559|gb|EDP75069.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1]
          Length = 317

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 90/191 (47%), Gaps = 15/191 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVSDVC- 77
           + +LVA SGG DS+ L+ AL   L  R F  +K  S    +H LR+ A +E  +  +   
Sbjct: 25  SSLLVAFSGGVDSVSLVDAL---LELRDFLNLKKLSLAHFNHRLRKEADEEEEFCREFAR 81

Query: 78  SR---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           SR   + +    V     +    L   ARE RYA + +        LI TAH  +D +ET
Sbjct: 82  SRELDIFVGAEDVGEVARREGRNLEEVARELRYAFLRKVKNERGYDLIATAHHLNDLVET 141

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +     +  +G GL G       + +  + RP    +RE+I S+   R + W ED SN
Sbjct: 142 ALI-----WLSRGAGLEGFLAFEPREGD--VVRPLYGVKREEILSYAEARGLRWVEDTSN 194

Query: 195 TDDRFERVRVR 205
           TD RF R RVR
Sbjct: 195 TDPRFFRNRVR 205


>gi|78485607|ref|YP_391532.1| PP-loop [Thiomicrospira crunogena XCL-2]
 gi|123555425|sp|Q31G65|TILS_THICR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|78363893|gb|ABB41858.1| tRNA(Ile)-lysidine synthetase [Thiomicrospira crunogena XCL-2]
          Length = 420

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 19/226 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   LVA SGG DS  +L AL   +S +S       A+ ++H L+  +          C 
Sbjct: 20  PVQFLVAFSGGLDSTVMLDALCKHVSPQSI-----HAVYINHGLQPESNQWADACKKACE 74

Query: 79  RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           RL +    V  + S   + G+ A AR+ RY  +  +++    T+++TAH   DQ ET+ +
Sbjct: 75  RLGVKFESVDVQVSDISRQGIEAVARQKRYEAL--YSRVTKGTILLTAHHQRDQAETLLL 132

Query: 138 RSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
              R     G G+SG+       +  L +  L   RP L    + I+S+  Q  + W ED
Sbjct: 133 NMAR-----GAGISGLSGMPYVKNIQLNEQTLQHCRPLLNVDYDAIQSYAKQYRLDWVED 187

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            SN +  + R  +R  V     HA       F      +N ++A+L
Sbjct: 188 SSNQELDYRRNYLRHEVLPKIRHAWPFSDANFAKSAHHLNESLALL 233


>gi|254829310|ref|ZP_05233997.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165]
 gi|258601723|gb|EEW15048.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165]
          Length = 648

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A  E R V   C R  
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFCERQG 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    +  +    Q GL   AR  RY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I  +  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|217974044|ref|YP_002358795.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS223]
 gi|217499179|gb|ACK47372.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS223]
          Length = 496

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 8/190 (4%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +SL     +++A SGG DS  L   L      R   +  +  + V H L + A    ++
Sbjct: 24  AQSLAPSCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFSYQLVYVHHGLSDNADSWAQH 81

Query: 73  VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +      +  +V     N  P+  L A AR+ RY  I  H    +  +++TAH  DDQ
Sbjct: 82  CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHEDDQ 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET+ +  +R    KG+   G    +     L   RP L   RE I ++  Q+ +   ED
Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196

Query: 192 PSNTDDRFER 201
            SN DD+++R
Sbjct: 197 ESNQDDKYDR 206


>gi|310658245|ref|YP_003935966.1| trnaile lysidine synthetase [Clostridium sticklandii DSM 519]
 gi|308825023|emb|CBH21061.1| tRNAile lysidine synthetase [Clostridium sticklandii]
          Length = 464

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 18/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ILVA+SGG DS+ LL AL  +    ++  IK  A  ++H +R  E  KD + Y + +C  
Sbjct: 22  ILVALSGGPDSVCLLHALKKL---ETYYNIKIYAAHLNHKIRGIEAQKDAL-YAAKLCDE 77

Query: 80  LRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           L +     A  V ++   K  T L  AAR+ RY ++ E    I A  I  AH  DDQ ET
Sbjct: 78  LDVPFFVKAIDVPAYAKEKKMT-LEEAARKLRYDMLFEVKNRIGAKKIAVAHNLDDQAET 136

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V MR  R     G G++G+   + Y     + RP +   + +I S+  +  ++   D +N
Sbjct: 137 VIMRLIR-----GTGITGL-KGMDYKRGDGVIRPLMDISKANIVSYCDENKLNPRIDYTN 190

Query: 195 TDDRFERVRVR 205
            +  + R ++R
Sbjct: 191 LETEYTRNKIR 201


>gi|219685944|ref|ZP_03540742.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii Far04]
 gi|219672518|gb|EED29559.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii Far04]
          Length = 440

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNN------IVAFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  V    +  K+   + G  +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GLSG+       +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIPG-----VNRNIIRPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NIS+  D +N  D + R RVR
Sbjct: 180 LSLNNISFFVDSTNAQDLYLRNRVR 204


>gi|152999993|ref|YP_001365674.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS185]
 gi|151364611|gb|ABS07611.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS185]
          Length = 491

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 8/190 (4%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +SL     +++A SGG DS  L   L      R   +  +  + V H L + A    ++
Sbjct: 24  AQSLAPDCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFHYQLVYVHHGLSDNADSWAQH 81

Query: 73  VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +      +  +V     N  P+  L A AR+ RY  I  H    +  +++TAH  DDQ
Sbjct: 82  CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHEDDQ 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET+ +  +R    KG+   G    +     L   RP L   RE I ++  Q+ +   ED
Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196

Query: 192 PSNTDDRFER 201
            SN DD+++R
Sbjct: 197 ESNQDDKYDR 206


>gi|304315867|ref|YP_003851012.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777369|gb|ADL67928.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 459

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           I+V VSGG DS+  LI L S   ++    ++   + V+H LR   A ++  +V  VC  +
Sbjct: 21  IVVGVSGGPDSI-CLINLLSEFKEKY--NLRLYVVHVNHMLRGIDADNDASFVEGVCRGM 77

Query: 81  RIAHSVVSW--KNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   +     K    + GL   AA RE RY    E  + +NA  I  AH  +D  ET+ 
Sbjct: 78  GIPFFLFKEDVKKYALEKGLSEEAAGREVRYKAFHEIFEKVNADKIAVAHNKNDVAETIL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G +G+    +  +N  I RP +R  R++I  +L  +NI +  D +N +
Sbjct: 138 LNILR-----GAGTAGLIG--IKPVNGNIIRPLIRTTRDEILDYLKSKNIKFVVDATNKE 190

Query: 197 DRFERVRVR 205
           D + R R+R
Sbjct: 191 DVYRRNRIR 199


>gi|16802265|ref|NP_463750.1| hypothetical protein lmo0219 [Listeria monocytogenes EGD-e]
 gi|47097258|ref|ZP_00234818.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224500330|ref|ZP_03668679.1| hypothetical protein LmonF1_11939 [Listeria monocytogenes Finland
           1988]
 gi|224503461|ref|ZP_03671768.1| hypothetical protein LmonFR_13287 [Listeria monocytogenes FSL
           R2-561]
 gi|254900996|ref|ZP_05260920.1| hypothetical protein LmonJ_14318 [Listeria monocytogenes J0161]
 gi|254913936|ref|ZP_05263948.1| tilS/hprT [Listeria monocytogenes J2818]
 gi|254938274|ref|ZP_05269971.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900]
 gi|284803042|ref|YP_003414907.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578]
 gi|284996183|ref|YP_003417951.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923]
 gi|61216688|sp|Q8YAC7|TILS_LISMO RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName:
           Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
           Full=Hypoxanthine-guanine phosphoribosyltransferase;
           Short=HGPRT; Short=HGPRTase
 gi|16409584|emb|CAD00746.1| fusion protein, N-terminal part similar to B. subtilis YacA
           protein, C-terminal part similar to hypoxanthine-guanine
           phosphoribosyltransferase [Listeria monocytogenes EGD-e]
 gi|47014358|gb|EAL05331.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258610884|gb|EEW23492.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900]
 gi|284058604|gb|ADB69545.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578]
 gi|284061650|gb|ADB72589.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923]
 gi|293591954|gb|EFG00289.1| tilS/hprT [Listeria monocytogenes J2818]
          Length = 648

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A  E R V   C R  
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFCERQG 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    +  +    Q GL   AR  RY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I  +  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|294338861|emb|CAZ87195.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine
           synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS
           [Thiomonas sp. 3As]
          Length = 350

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 98/185 (52%), Gaps = 9/185 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG+DS  LL+A  ++     +G  +  A+ V+H L+ +A+   ++ +  C+ L 
Sbjct: 47  IGIAFSGGADSTALLLAARTL-----WGGGRLCALHVNHGLQTSAQLFAQHCAQACAALD 101

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +A++  + + +      L   AREARY  +++ A+  N  +++ A   DDQ+ET+ +   
Sbjct: 102 VAYAEATLQVDVARGQSLEEVAREARYLALAKLAREQNCAVVLLAQHGDDQVETLLLALL 161

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G  L+ M    +       +RP L C   ++RS+L  + +S+ +DP N D  F 
Sbjct: 162 RGAGPRG--LAAM-PAQMQRHGCSFARPLLDCGAAELRSWLKAQAVSFLDDPMNADPAFR 218

Query: 201 RVRVR 205
           R R+R
Sbjct: 219 RSRIR 223


>gi|37524690|ref|NP_928034.1| tRNA(Ile)-lysidine synthetase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|61216585|sp|Q7N8N0|TILS_PHOLL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|36784115|emb|CAE12984.1| Putative cell cycle protein MesJ [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 442

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 17/199 (8%)

Query: 10  RFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           R FV   + L     ILV  SGG DS  +L+ L     ++   KI+  AI + H L   A
Sbjct: 7   RLFVTLAKQLGEYKKILVGFSGGLDS-SVLLHLLVNWRNQHNQKIQLRAIHIHHGLNLKA 65

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              + +   +C   ++            Q G+ AAAR+ARY +     +     +++TA 
Sbjct: 66  DQWIEHCQLICDDWQVEFHSARVTIDARQKGIEAAARDARYQVFKSELQ--KDEVLVTAQ 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             DDQ ET  +  +R     G+     ++   DT+L        RP L   R ++  +  
Sbjct: 124 HLDDQAETFLLALKRGSGPAGLASMPSIAVFADTLLL-------RPLLDYSRNELEKYAS 176

Query: 183 QRNISWCEDPSNTDDRFER 201
           +  ++W ED SN DDR++R
Sbjct: 177 KHRLNWIEDDSNQDDRYDR 195


>gi|307250818|ref|ZP_07532747.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857177|gb|EFM89304.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 419

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 168/401 (41%), Gaps = 37/401 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + ++ +SGG DS+ LL  L  +  +         A+ + H L   A     +   VC RL
Sbjct: 19  NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADSWAAFCEQVCKRL 71

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AR ARY  I E  +  N  L+ TAH  DDQ ET  +  +
Sbjct: 72  KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M   + +  N  I RP L   +  I  + LQ+  +W ED SN D  ++
Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R+  L  +  + + F  +  +     A   ML+ + L   ++     S+  L
Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241

Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308
           NI++   F       L+R+    CG Q  +P    + +++   ++    K   + +    
Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299

Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           + R  + L++T  +   P     P    +  T+ DG  + Q+L DS+I        +  +
Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSIIYQKSGKIDRLLL 358

Query: 365 PSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404
           P  +     Q  L+     K+ GKP+     +   +  +P 
Sbjct: 359 PEALVNAPLQVKLAHQGKVKQYGKPMREEMKKRYQQAQVPA 399


>gi|254385667|ref|ZP_05000990.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Streptomyces sp. Mg1]
 gi|194344535|gb|EDX25501.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Streptomyces sp. Mg1]
          Length = 343

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 85/192 (44%), Gaps = 17/192 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G I+   ++VDH L+  +      V    + LR
Sbjct: 38  VLVACSGGADSMALASAL--AFEAPKLG-IRAGGVTVDHGLQPGSDLRAAEVVTRMTALR 94

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM---- 137
           +            + G  AAAR+ARY  + E A  + A  ++  HT DDQ ETV +    
Sbjct: 95  LDPVESVAVRVGREGGPEAAARDARYGALDEAADRLGAAAVLLGHTRDDQAETVLLGLAR 154

Query: 138 ----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
               RS     E   G  G   T  Y       RPFL+  R+  R   + +++   +DP 
Sbjct: 155 GSGIRSLSGMPEVSAGPGGPGRTNRY------RRPFLQVDRQTARKACMVQSLPVWDDPH 208

Query: 194 NTDDRFERVRVR 205
           N D  + R R+R
Sbjct: 209 NLDPAYTRSRLR 220


>gi|119504829|ref|ZP_01626907.1| cell cycle protein [marine gamma proteobacterium HTCC2080]
 gi|119459434|gb|EAW40531.1| cell cycle protein [marine gamma proteobacterium HTCC2080]
          Length = 426

 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 127/282 (45%), Gaps = 23/282 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++ +SGG DS+ LL   H+ L      +     A+ + H L   A   V    DVC +L 
Sbjct: 1   MLGLSGGCDSIALLHLAHAWLDHVGPERRPALRAVHIHHGLAPEADAWVEVCHDVCQQLS 60

Query: 82  IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           IA SV       P T    G+ AAAR ARY++  +  K+    +++ AH  DDQ+ETV  
Sbjct: 61  IALSVY---RVTPVTDEGKGIEAAARTARYSVYRQELKS--GEVLLLAHHADDQVETVLQ 115

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    KG   +GM         + +SRP L   R  I+ +   R +++  D SN D 
Sbjct: 116 RLLRGTGPKG--FAGMPRRRELGQGV-LSRPLLGVARSVIKRWADNRELAYVIDASNQDM 172

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           RF+R     F+R   L  L    +++   R  +  A   L    L  H    +A++ +++
Sbjct: 173 RFDRG----FLRTEILPKL---EQRWPGYRESIRRATE-LQSGLLRQHNAQPLALTANVM 224

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
                 + Y L+ SA    G ++   +R +  ++L + +  R
Sbjct: 225 G--EPAMAYHLKDSAQDSRGVLAYSLHRWLSELLLDVPAAAR 264


>gi|315179362|gb|ADT86276.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii NCTC 11218]
          Length = 432

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 11/193 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H ++A SGG DS  LL  +     +R   +I   A+ V H L   A +  +     C   
Sbjct: 18  HFVLAFSGGVDSRVLLALIARYRQER---EISVQAVHVHHGLSVNADEWAQRCQHWCQAA 74

Query: 81  RIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            +  ++  VS   +  ++ +   AR+ARYA ++ H     +TL++  H  DDQLET  + 
Sbjct: 75  HVPLAIERVSLATASGES-IEKLARDARYAALATHMHP-GSTLLLGQHA-DDQLETFLLA 131

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    KG  L+ M     +     + RP L   R  I  F +Q ++ W ED SN D+R
Sbjct: 132 LKRGSGPKG--LAAMAQQAPFSCGQ-LLRPLLSVSRAQIEYFAMQHHLQWVEDESNQDER 188

Query: 199 FERVRVRRFVRDI 211
           +ER  +R  V  I
Sbjct: 189 YERNFLRHRVTPI 201


>gi|220927542|ref|YP_002504451.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulolyticum H10]
 gi|219997870|gb|ACL74471.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulolyticum H10]
          Length = 481

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 89/194 (45%), Gaps = 17/194 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSD 75
           Y   I+V +SGG DS+ LL  L+S+ ++     IK   + V+H LR  E  +DE  +V  
Sbjct: 25  YGEGIVVGISGGYDSVCLLHILYSISNELG---IKIYPVHVNHMLRGDEALRDE-NFVKS 80

Query: 76  VCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            CS L     I H  ++ K    +  L  A R ARY + S  A    A+ I  AH+ +DQ
Sbjct: 81  FCSSLGLEVYIKHIDIAKKAKTEKISLEEAGRNARYEVFSLVAGERGASKIAVAHSRNDQ 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ MR  R     G GL G+        N  I RP L   R  I  ++    +    D
Sbjct: 141 AETILMRICR-----GTGLEGLRGMEYKRDN--IIRPLLDADRSQIEEYVNGIGVEAVTD 193

Query: 192 PSNTDDRFERVRVR 205
            SN    + R R+R
Sbjct: 194 SSNLHTDYFRNRIR 207


>gi|297243772|ref|ZP_06927702.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis AMD]
 gi|296888193|gb|EFH26935.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis AMD]
          Length = 372

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 90/180 (50%), Gaps = 11/180 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS+ L  AL SV+   S G I+   + VDH L+  + +     +  C +  
Sbjct: 45  VLIACSGGRDSLAL-TAL-SVIVCASRG-IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101

Query: 82  IAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           I    V   S        G  +AAR+ARY  I E AK   A  ++ AHT +DQ ETV M 
Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARKARYQAIIEVAKKQQAAAVLLAHTANDQAETVMM- 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             +D A  G+  ++GM   +    N+  +RP ++  RED         ISW +DP+N DD
Sbjct: 161 GLKDSA--GLEAVAGM-KAVTLRQNVLFARPLIKLTREDTTGICEDLGISWWDDPTNGDD 217


>gi|283783579|ref|YP_003374333.1| tRNA(Ile)-lysidine synthetase [Gardnerella vaginalis 409-05]
 gi|283441060|gb|ADB13526.1| tRNA(Ile)-lysidine synthetase [Gardnerella vaginalis 409-05]
          Length = 372

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 89/180 (49%), Gaps = 11/180 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS+ L  AL SV+   S G I+   + VDH L+  + +     +  C +  
Sbjct: 45  VLIACSGGRDSLAL-TAL-SVIVCASRG-IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101

Query: 82  IAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           I    V   S        G  +AAR ARY  I E AK   A  ++ AHT +DQ ETV M 
Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARNARYQAIIEVAKKQQAAAVLLAHTANDQAETVMM- 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             +D A  G+  ++GM   +    N+  +RP ++  RED         ISW +DP+N DD
Sbjct: 161 GLKDSA--GLEAVAGM-KAVTLRQNVLFARPLIKLSREDTTGICEDLGISWWDDPTNGDD 217


>gi|169634324|ref|YP_001708060.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii SDF]
 gi|260556042|ref|ZP_05828261.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606]
 gi|169153116|emb|CAP02190.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii]
 gi|260410097|gb|EEX03396.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 467

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 17/186 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DSM LL  +  +         K  AI +DH L++ + +    V+   + L I
Sbjct: 34  LIGCSGGMDSMLLLHLMAQIFPQ------KIRAIYIDHQLQDQSAEWAEVVATQATILNI 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            + +   K       L A AR+ARY    +H +     +++ AH   DQ ETV +R    
Sbjct: 88  PYIIQ--KVQIANGNLEAQARQARYQAYQQHLQ--ENEILLLAHHQQDQAETVILR---- 139

Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               G G+ G+     I Y  ++ I RPFL   RE I  +  Q  + + +DP N D+ ++
Sbjct: 140 -LLSGAGVDGLAAMQAIDYRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYD 198

Query: 201 RVRVRR 206
           RV  R 
Sbjct: 199 RVWCRE 204


>gi|29840521|ref|NP_829627.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC]
 gi|61216617|sp|Q822B9|TILS_CHLCV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29834870|gb|AAP05505.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC]
          Length = 317

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 96/203 (47%), Gaps = 25/203 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL      L+A+SGGSDS+ LL  L S         + F+A+ VDH  RE++  E  
Sbjct: 15  FFSSLDMKKSYLLALSGGSDSLFLLYLLKS-------RGVAFTAVHVDHGWRESSYREAE 67

Query: 72  YVSDVCSR----LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   C      + I H    ++ S+ P+     AAR  RY L  +  K  N   I  AH
Sbjct: 68  ELKIRCEEEGIPILIDHVPPEYRTSRDPEN----AARRYRYTLFHKVCKEQNLAGIFLAH 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             +DQ ETV  R       +G  LS   GM     Y+ ++ + RP L   ++ I + L  
Sbjct: 124 HANDQAETVLKR-----LLEGASLSNLKGMSPKTSYE-DIPLFRPLLHIPKQIIINVLDA 177

Query: 184 RNISWCEDPSNTDDRFERVRVRR 206
            N+   +D +NTD+R+ R R+R+
Sbjct: 178 ENVPCVQDITNTDERYLRARMRK 200


>gi|323497993|ref|ZP_08103002.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326]
 gi|323317038|gb|EGA70040.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326]
          Length = 434

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 26/196 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCS 78
           +++  SGG DS  LL      L+ R FG+    +  A+ V H L   A    R+ ++ C+
Sbjct: 21  LVIGFSGGVDSQVLL-----TLAAR-FGQQYQCECLAVHVHHGLSGNAD---RW-AEQCA 70

Query: 79  RLRIAHS-----VVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +   AH      VV     +PQ   + A AREARY  +++H +  +  +++T    DDQL
Sbjct: 71  QW--AHERGVPFVVEKVILQPQGKSIEACAREARYQALAQHLE--HGDVLLTGQHADDQL 126

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG+     C +     N ++ RP L   R  I +F ++  + W ED 
Sbjct: 127 ETFLLAVKRGSGPKGLSAMAQCRSFA---NGYMLRPLLEVNRSTIEAFAVEHQLQWAEDE 183

Query: 193 SNTDDRFERVRVRRFV 208
           SN D RF+R  +R  V
Sbjct: 184 SNQDTRFDRNYIRHQV 199


>gi|298252658|ref|ZP_06976452.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis 5-1]
 gi|297533022|gb|EFH71906.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis 5-1]
          Length = 372

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 89/180 (49%), Gaps = 11/180 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS+ L  AL SV+   S G I+   + VDH L+  + +     +  C +  
Sbjct: 45  VLIACSGGRDSLAL-TAL-SVIVCASRG-IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101

Query: 82  IAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           I    V   S        G  +AAR ARY  I E AK   A  ++ AHT +DQ ETV M 
Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARNARYQAIIEVAKKQQAAAVLLAHTANDQAETVMM- 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             +D A  G+  ++GM   +    N+  +RP ++  RED         ISW +DP+N DD
Sbjct: 161 GLKDSA--GLEAVAGM-KAVTLRQNVLFARPLIKLSREDTTGICEDLGISWWDDPTNGDD 217


>gi|239637495|ref|ZP_04678469.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603]
 gi|239596940|gb|EEQ79463.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603]
          Length = 432

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 21/217 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI++AVS G DSM LL   H +L++      K + I ++H LR+ + +E  +    C   
Sbjct: 13  HIVLAVSTGIDSMCLL---HLLLNEYQHTYSKLTCIHINHGLRQASIEEEAFFKTYCEEH 69

Query: 81  RIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            I + +     S+       +   +R+ RY       K + A++++TAH  DDQ+ET++ 
Sbjct: 70  GIEYYIKRLDLSETVEAGNSIQNISRQYRYEWFDYIMKQLGASVLLTAHHRDDQIETIFY 129

Query: 138 R--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           R  + R +    +G++     + Y L     RP L   +  I+S+  Q N+ + ED SN 
Sbjct: 130 RLFTGR-FTRSHLGIAYTSQRVSYQL----VRPMLDISKATIKSYQNQYNVPFFEDVSNH 184

Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQD 225
           ++ + R  +R  +       + +D+  L LK+K + D
Sbjct: 185 NNVYVRNDIRNRIIPAVMDNQQLDVAHL-LKLKSWHD 220


>gi|218290654|ref|ZP_03494745.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239319|gb|EED06517.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 277

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 7/202 (3%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           + FF +  +  AH ++ VSGG DSM LL        +       FS + V H LRETA  
Sbjct: 12  ISFFQQHRLETAHAVIGVSGGVDSMVLLHLCQRAAEEAPSALGGFSVVHVHHHLRETADR 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +  +V   C    I   +   K   +   GL AAAR ARY  ++E A+     +I+ AH 
Sbjct: 72  DAEFVEQYCREREIPCEIAHVKVVDERGEGLEAAARRARYQALAERARA-KGGVILVAHH 130

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNI 186
             D+LET  MR  R     G+G          ++N + ++RP +   + +I  +     +
Sbjct: 131 AQDELETFIMRLLRGAGPGGLGAM----RPEAEMNGVRVARPLIAVEKGEIDRYAEAHGV 186

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
              ED +N D RF R RVR+ V
Sbjct: 187 PHVEDETNEDPRFFRNRVRQVV 208


>gi|110639392|ref|YP_679602.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282073|gb|ABG60259.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 450

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 93/193 (48%), Gaps = 25/193 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77
           IL+ VSGG DS+        VL D  F K  FS   V HC   LR +  D + ++VSD+ 
Sbjct: 21  ILLTVSGGIDSI--------VLFDL-FVKAGFS-FGVAHCNFSLRGSESDGDEQFVSDLA 70

Query: 78  SRLRIAHSVVSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +  I+  V  +  S   +     +  AARE RY    E A+      I TAH  +D +E
Sbjct: 71  IKQGISIHVKRFDTSAFASNNALSIQMAARELRYTWFKELARQYGYAAIATAHQLNDIIE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +   R     G G++G+    + + N  I RP L   R+ IRS+  + N+ W ED S
Sbjct: 131 TTLINLSR-----GTGIAGLHG--IPEKNGEIIRPLLFAGRDKIRSYAEENNLKWREDSS 183

Query: 194 NTDDRFERVRVRR 206
           N ++++ R  +R 
Sbjct: 184 NMEEKYARNLIRH 196


>gi|315644384|ref|ZP_07897524.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453]
 gi|315280261|gb|EFU43553.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453]
          Length = 476

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 13/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I+VAVSGG DS+ LL  LH +  + +   ++     V H  R  +  E   V ++  RL 
Sbjct: 29  IVVAVSGGPDSVALLHVLHEISLNHT--PLRLICAHVHHGFRTESDQEAEMVRELAERLG 86

Query: 81  ---RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
                A   +     +   G   AARE RY  + + A+  NA  +  AH  DDQ ETV M
Sbjct: 87  LPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTAQKYNARSVALAHHADDQAETVLM 146

Query: 138 RSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           R  R     G GL G+        +  + + RPFLR  + DI          +  D SN 
Sbjct: 147 RLLR-----GSGLPGLAGIKFKRTEKKVELIRPFLRMYKADIVELCRVCGFQYAVDNSNL 201

Query: 196 DDRFERVRVR 205
             ++ R  +R
Sbjct: 202 QTKYRRNAIR 211


>gi|19071761|gb|AAL80000.1| RASPBERRY3 [Arabidopsis thaliana]
          Length = 662

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 94/213 (44%), Gaps = 25/213 (11%)

Query: 22  ILVAVSGGSDSMGLLI--------ALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRY 72
           I + VSGG DSM L +         L  V  +++ G I    AI VDH LR+ +KDE   
Sbjct: 87  IALGVSGGPDSMALCVLTAKWKTQGLSCV--NKTDGFIDGLVAIVVDHGLRQESKDEAEL 144

Query: 73  VSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFD 129
           V    S++ I   + S  W + +P+ G L  AARE RY +IS         +++ AH  D
Sbjct: 145 VCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHAD 204

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIR 178
           DQ E   +R  R     G+  +     I           + + ++ +  P L   +ED+ 
Sbjct: 205 DQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVGPLLDFWKEDMY 264

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
                    W EDP+N    F R R+R  + ++
Sbjct: 265 KICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNL 297


>gi|330721718|gb|EGG99715.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC2047]
          Length = 401

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 14/245 (5%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             A+ V H L + A D   +   VC +L +  +V   +   PQ  L    RE RY +   
Sbjct: 11  LEALHVHHGLSDYADDWAAHCQYVCDQLSVPLTVRHVRAEMPQASLENQLRELRYQVF-- 68

Query: 113 HAKTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
               +N   L+  AH  DDQ+ET+ +R  R    +G  L+GM         + I RP L 
Sbjct: 69  -INVLNGGDLLALAHHADDQVETMMLRMLRGTGPQG--LAGMPSQRCLGQGMLI-RPLLE 124

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR-DIDLHALYLKMKKFQDLRVKV 230
             R ++ S+     +SW ED SN D RF+R  +R  V   +     Y +   F++ +V  
Sbjct: 125 HCRSELESYAQHHGLSWIEDDSNADTRFDRNYLRHEVMPKLARRWPYYRKNFFRNAQVNK 184

Query: 231 N--NAVAMLIPKYLTVHMRSIIA--ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
           +  +++   + + L   M++  A    + +L   + L   LLR    I    + LPGY+ 
Sbjct: 185 DALSSLDYFLERELQPQMQANEAGLDCEWLLGFPAALQINLLRGWLNI--RSLPLPGYKH 242

Query: 287 MERVM 291
           +++V+
Sbjct: 243 LQQVL 247


>gi|317126809|ref|YP_004093091.1| tRNA(Ile)-lysidine synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315471757|gb|ADU28360.1| tRNA(Ile)-lysidine synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 471

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 34/306 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           I+VAVSGG DSM LL  L  V  D     ++     V+H LR  E+  D   +V   C  
Sbjct: 21  IIVAVSGGPDSMALLHYLQMVKRDYH---LQLIVAHVEHGLRGVESVND-CNFVKSYCEE 76

Query: 80  LRI-----AHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            ++       +V++ K    + GL    AAR +RY    +  +   AT +  AH  DDQ+
Sbjct: 77  NKLDFFLYEPNVMAMKE---ELGLSTQEAARFSRYQWFEKLMEEHKATKLAFAHHGDDQV 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV M+  R      + L G+     +  N  I RPFL   + DI  +  + +I +  D 
Sbjct: 134 ETVLMKQVRGSV---VSLQGIPVKRQFG-NGMIIRPFLCVEKSDILEYCQEHHIQYRIDQ 189

Query: 193 SNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVA-MLIPKYLTVH 245
           SN  D ++R R R+++       +  +H  + +  +      +   ++A M + K +  H
Sbjct: 190 SNDSDNYKRNRFRKYILPFLKEENPSIHKTFQRQSEISTEENEFLQSLAKMEVEKAIDYH 249

Query: 246 MRSIIAIS-QDILNIDSTL----LFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             S I IS Q +L + +TL    L  +L   +   G +I++  + S+  + L  K+   G
Sbjct: 250 QESEICISNQRLLQMPTTLQRRALHLILNYLSLNSGREITVHHFDSI--IELIKKASPSG 307

Query: 301 CVSIGR 306
            + + +
Sbjct: 308 MLHLPK 313


>gi|295698551|ref|YP_003603206.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia
           pediculicola USDA]
 gi|291157496|gb|ADD79941.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia
           pediculicola USDA]
          Length = 454

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 18/204 (8%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHC 61
            P   ++   +SL     +LV  SGG DS  LL   H +++ R   KIK    AI ++H 
Sbjct: 7   EPYNLLKLISKSLNPFKKVLVGFSGGMDSTVLL---HILMTLRKLKKIKIDLRAIHINHH 63

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           L++ +     +   +C   +I+      K S  + G+ + +R  RY  +    +     +
Sbjct: 64  LQKESNLWESHCKKICDLWKISFLSKRVKISSKKYGVESESRAIRYREMRNVLRP--KEV 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----TILYDLNLWISRPFLRCRREDI 177
           IMTAH  DDQ ET  +  +R     G G SG+      T  +D N  I RP L   +  +
Sbjct: 122 IMTAHHIDDQAETFLLALKR-----GSGPSGLSSMKFITSFHDKN--IVRPLLSFEKTQL 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFER 201
           + +  +  +SW ED SN  D F+R
Sbjct: 175 KKYAEENRLSWIEDQSNFQDLFDR 198


>gi|257899971|ref|ZP_05679624.1| PP-loop family protein [Enterococcus faecium Com15]
 gi|257837883|gb|EEV62957.1| PP-loop family protein [Enterococcus faecium Com15]
          Length = 481

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL AVSGG DSM LL  L  + + R  G      + ++H LRE + +E  Y+   C +  
Sbjct: 33  ILAAVSGGVDSMVLLHLL--LQAQRQIG-FSLGVVHINHQLREESAEEAAYLRSYCEKKN 89

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V  W++   +T +  AAR  RY   +   +      +MTAH  DDQ+ETV M+  R
Sbjct: 90  LPLYVSVWEDP-AKTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGDDQIETVLMKIIR 148

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +    SG+ +   +     + RP L   +E++ ++  +  + + ED +N     +R
Sbjct: 149 --GGQLSTFSGIKEVQPFATGRLV-RPLLSFSKEELYAYAAESQLVYFEDQTNQLLDVQR 205

Query: 202 VRVRRFV 208
            R+R  V
Sbjct: 206 NRLRHLV 212


>gi|90416187|ref|ZP_01224119.1| mesJ protein [marine gamma proteobacterium HTCC2207]
 gi|90331912|gb|EAS47126.1| mesJ protein [marine gamma proteobacterium HTCC2207]
          Length = 458

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 16/191 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILV  SGG DS      +   L        + +A+ + H L   A D  ++   +C  L
Sbjct: 35  QILVGFSGGLDS-----TVLLHLLCELLPPERITAVHIHHGLSANADDWQQHAKTLCHSL 89

Query: 81  R---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               I+ SVV    +K   GL +AAR+ARY +  EH   I   L++  H  DDQ+ETV  
Sbjct: 90  GVRLISESVVV---NKTGAGLESAARDARYKVFEEH--LIEDGLLLLGHHADDQVETVLF 144

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +  GLSG+  T        I RP L   +  ++++   + + W ED SN  +
Sbjct: 145 RLLRGSGAR--GLSGIPQTRAVGAGHLI-RPLLNQPKSRLQAYAEAQQLVWIEDESNQQE 201

Query: 198 RFERVRVRRFV 208
           +F+R  +R  V
Sbjct: 202 QFDRNYLRNSV 212


>gi|238918797|ref|YP_002932311.1| tRNA(Ile)-lysidine synthetase [Edwardsiella ictaluri 93-146]
 gi|259533714|sp|C5B7T0|TILS_EDWI9 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|238868365|gb|ACR68076.1| tRNA(Ile) [Edwardsiella ictaluri 93-146]
          Length = 439

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 6/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL AL   L       ++   + V H L   A   V +   VC   +
Sbjct: 20  LLVAFSGGLDSTVLLHAL-VQLRASCLPHLRLRVVHVHHGLSHFADQWVDHCESVCYLWQ 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V+  +    +  + AAAR+ARY  I+E   +     ++TA   DDQ ET  +  +R
Sbjct: 79  VPLHVLHVQVDTQRNSVEAAARDARYQAIAELIDSRET--LLTAQHLDDQCETFLLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GLS M  ++ + +   + RP L   RE + ++    ++SW ED SN D RF+R
Sbjct: 137 --GSGPTGLSAMAQSMPFFVCEQL-RPLLDISREQLTAYAQVHDLSWVEDDSNADARFDR 193


>gi|268318837|ref|YP_003292493.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785]
 gi|262397212|emb|CAX66226.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785]
          Length = 431

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            L+A SGG DS+ LL  L + L + S   I      +DHCLR+ +  E + +  + S L+
Sbjct: 20  FLLAASGGPDSVALLKMLVNFLPNPSEQLI---VAHLDHCLRDDSFLESQLLQRLTSALK 76

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +      W     PQ G+ A ARE RYA ++E  +      ++TAH  DD +E + ++  
Sbjct: 77  VKLVEKKWPVELHPQAGVEAKAREYRYAFLAEVGRKYQTDYLLTAHHGDDLIENILLKFI 136

Query: 141 R--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  D AE   + + G   +      + + RP ++  ++++  +    ++ + ED +N +D
Sbjct: 137 RSGDVAEMNSLQIVGNLGS------MKLLRPLVKYSKDELLKYDEDHHLDFIEDKTNFED 190

Query: 198 RFERVRVRRFV 208
              R R+R  V
Sbjct: 191 DTLRNRLRHHV 201


>gi|296118975|ref|ZP_06837548.1| tRNA(Ile)-lysidine synthase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968073|gb|EFG81325.1| tRNA(Ile)-lysidine synthase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 340

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 19/211 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+   +VR  +  L +P  + V +SGG+DS+ L+ AL    ++         A+ +DH 
Sbjct: 14  FLAVRGAVRESLEQLGWPEQVYVGLSGGADSLALVAAL---CAEVRVATTSVHALCIDHG 70

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM-AAAREARYALISEHAKTINAT 120
           +++ + D  +  +    R     SV+  +  +   G M A AR  RY   +E A  +  T
Sbjct: 71  VQDGSGDIAKQAAAHAERWGATASVIPVEVVRDSAGGMEAEARRVRYQAFAEVAGEM--T 128

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDI 177
            +  AHT +DQ ET+ + S          L G   T+ +   +    I RP L  RR D 
Sbjct: 129 PVFVAHTAEDQAETLLLSS----------LRGHISTMAFATEIEGAKIYRPLLGIRRADT 178

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
                +  +    DP N  + F RV +R+ V
Sbjct: 179 LGACAELGVQAWHDPQNEREDFRRVAIRKTV 209


>gi|194439921|ref|ZP_03071983.1| tRNA(Ile)-lysidine synthase [Escherichia coli 101-1]
 gi|253774785|ref|YP_003037616.1| tRNA(Ile)-lysidine synthetase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160307|ref|YP_003043415.1| tRNA(Ile)-lysidine synthetase [Escherichia coli B str. REL606]
 gi|312970289|ref|ZP_07784471.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 1827-70]
 gi|194421167|gb|EDX37192.1| tRNA(Ile)-lysidine synthase [Escherichia coli 101-1]
 gi|242376019|emb|CAQ30702.1| tRNA[Ile]-lysidine synthetase [Escherichia coli BL21(DE3)]
 gi|253325829|gb|ACT30431.1| tRNA(Ile)-lysidine synthetase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972208|gb|ACT37879.1| tRNA(Ile)-lysidine synthetase [Escherichia coli B str. REL606]
 gi|253976417|gb|ACT42087.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BL21(DE3)]
 gi|310337787|gb|EFQ02898.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 1827-70]
 gi|323959949|gb|EGB55596.1| PP-loop family protein [Escherichia coli H489]
 gi|323970667|gb|EGB65923.1| PP-loop family protein [Escherichia coli TA007]
          Length = 432

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|326386204|ref|ZP_08207828.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209429|gb|EGD60222.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 322

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 95/188 (50%), Gaps = 15/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG DS+ LL+  H+VL  + F     +  +VDH LR  +  E   V+ +C+   
Sbjct: 29  VGLAVSGGPDSLALLLLAHAVLPAQGF-----AVATVDHGLRAESAGEAAMVAHLCAERG 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           IAH  +   +  P + +   AR ARY  + +       T ++TAH  DDQ ET+ MR  R
Sbjct: 84  IAHDTLR-ISLAPGSAIQERARAARYRALEDWRVGRGLTALVTAHHADDQAETLVMRLNR 142

Query: 142 DYAEKGMGLSGMCD----TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                G GL G+        +      + RP L   R D+ + L  R I+  +DPSN D 
Sbjct: 143 -----GAGLRGLAAMRARVPVPGGEGVLLRPLLGWARADLAALLGDRGIAAVDDPSNRDV 197

Query: 198 RFERVRVR 205
           RFERVRVR
Sbjct: 198 RFERVRVR 205


>gi|300932146|ref|ZP_07147429.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 187-1]
 gi|300460083|gb|EFK23576.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 187-1]
          Length = 432

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|298208541|ref|YP_003716720.1| putative cell-cycle protein [Croceibacter atlanticus HTCC2559]
 gi|83848464|gb|EAP86333.1| putative cell-cycle protein [Croceibacter atlanticus HTCC2559]
          Length = 436

 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 25/195 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77
           +L+AVSGG DSM LL             K     I++ HC   LR    D +   V +  
Sbjct: 21  LLLAVSGGLDSMVLL----------HLCKASGLNIAIAHCNFNLRGKESDADTLLVKEEA 70

Query: 78  SRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            RL+I   V  +      +  +  +  AARE RY    E  K  +   ++TAH  +D +E
Sbjct: 71  DRLQITCHVEHFNTESYAADIKVSIQIAARELRYQWFDEVIKEFDYNYVLTAHHLNDDVE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +   R     G GL G+    +  +N  I RP L   RE+I ++ L   I W ED S
Sbjct: 131 TFIINLTR-----GTGLDGLSG--IPKVNNTIIRPLLPFSREEIHTYALAEKIIWREDAS 183

Query: 194 NTDDRFERVRVRRFV 208
           N  D++ R  +R  +
Sbjct: 184 NASDKYLRNSIRHHI 198


>gi|23336235|ref|ZP_00121460.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Bifidobacterium longum DJO10A]
 gi|189440708|ref|YP_001955789.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum DJO10A]
 gi|226695535|sp|B3DR08|TILS_BIFLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|189429143|gb|ACD99291.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum DJO10A]
          Length = 388

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +  S G ++   + VDH L+E ++      ++ C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGVVIVDHGLQEGSEQVAGEAANRCRALG 102

Query: 82  IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +   +V  +N+  Q    GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV + 
Sbjct: 103 LGPVIV--RNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIG 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R    +G+  L+GM   +     +  +RP L   R +         + + +DP+N D
Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGVTFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215


>gi|311897755|dbj|BAJ30163.1| putative tRNA(Ile)-lysidine synthase [Kitasatospora setae KM-6054]
          Length = 375

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG+DSM L  A  +       G ++  A++VDH L++ + +    V+     L 
Sbjct: 77  VLVAVSGGADSMALATA--TAFEAPKLG-LRVGAVTVDHGLQDGSAERAEQVAVRLRELG 133

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    A +V   +   P+     AAR+ARYA +   A+   A  ++  HT DDQ ETV +
Sbjct: 134 LDPVEAVAVRVGREGGPEN----AARDARYAALDLAAERHGALAVLLGHTRDDQAETVLL 189

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +   L+GM             RP L   R   R     ++I   +DP NTD 
Sbjct: 190 GLARGSGAR--SLAGMPAQ-----KGRYRRPLLELDRAATRQACSAQSIPVWDDPHNTDP 242

Query: 198 RFERVRVRRFV 208
            + R RVR  V
Sbjct: 243 AYTRSRVRHEV 253


>gi|303253037|ref|ZP_07339189.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307262025|ref|ZP_07543680.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302648101|gb|EFL78305.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306868308|gb|EFN00130.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 419

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 151/348 (43%), Gaps = 36/348 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + ++ +SGG DS+ LL  L  +  +         A+ + H L   A     +   VC RL
Sbjct: 19  NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADSWAAFCEQVCKRL 71

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AR ARY  I E  +  N  L+ TAH  DDQ ET  +  +
Sbjct: 72  KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M   + +  N  I RP L   +  I  + LQ+  +W ED SN D  ++
Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R+  L  +  + + F  +  +     A   ML+ + L   ++     S+  L
Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241

Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308
           NI++   F       L+R+    CG Q  +P    + +++   ++    K   + +    
Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299

Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLI 352
           + R  + L++T  +   P     P    +  T+ DG  + Q+L DS+I
Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSII 346


>gi|293571076|ref|ZP_06682117.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980]
 gi|291608859|gb|EFF38140.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980]
          Length = 484

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 7/187 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL AVSGG DSM LL  L  + + R  G      + ++H LRE + +E  Y+   C +  
Sbjct: 36  ILAAVSGGVDSMVLLHLL--LQAQRQIG-FSLGVVHINHQLREESAEEAAYLRSYCEKKN 92

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V  W++   +T +  AAR  RY   +   +      +MTAH  DDQ+ETV M+  R
Sbjct: 93  LPLYVSVWEDP-AKTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGDDQIETVLMKIIR 151

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +    SG+ +   +     + RP L   +E++ ++  +  + + ED +N     +R
Sbjct: 152 --GGQLSTFSGIKEVQPFATGRLV-RPLLSFSKEELYAYAAESQLVYFEDQTNQLLDVQR 208

Query: 202 VRVRRFV 208
            R+R  V
Sbjct: 209 NRLRHLV 215


>gi|153005200|ref|YP_001379525.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152028773|gb|ABS26541.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 436

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 91/200 (45%), Gaps = 10/200 (5%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E++R   R L     +LVA+S G DS  LL +L  +        +  +A+ VDH LR  
Sbjct: 13  LETIRRR-RLLAAGDRVLVALSAGPDSTALLASLAELRDAGCLPGMALAALYVDHGLRPG 71

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             DE      VC RL +    V  +       + A AR ARYA +   A    AT I T 
Sbjct: 72  GADEAGSAKSVCERLGVTFESVRVRIGP--GNVQAEARRARYAALRTAALRAGATRIATG 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT  DQ ETV +R  R    +  GL+G+           I RP +   R +   +L +R 
Sbjct: 130 HTRTDQAETVLLRLLRGAGAR--GLAGIPPR-----RGAIVRPLIDRSRAEGLVYLAERG 182

Query: 186 ISWCEDPSNTDDRFERVRVR 205
           + W  DP+N   RF R R+R
Sbjct: 183 VPWRTDPTNATPRFARNRLR 202


>gi|110802414|ref|YP_699728.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens SM101]
 gi|110682915|gb|ABG86285.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens SM101]
          Length = 469

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L  +   +    I+  A  V+HCLR E+A  +  YV ++C  L
Sbjct: 21  VLVALSGGPDSVCLLHILSEL---KELLHIEVYAAHVNHCLRGESALKDEAYVEELCKNL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    ++  + +       A RE RY    E     +   I  AH  +DQ ET+ 
Sbjct: 78  NIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAETLI 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR+ R     G G+ G+         ++I RP L  RR++I  +    N++   D +N +
Sbjct: 138 MRALR-----GTGIEGLVGIKPVRDGIFI-RPILILRRKEIEEYCEINNLTPRIDETNLE 191

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 192 EIYSRNKIR 200


>gi|320196935|gb|EFW71556.1| tRNA(Ile)-lysidine synthetase [Escherichia coli WV_060327]
          Length = 437

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 9/182 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V++  ++C +
Sbjct: 14  QILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKHCENICQQ 70

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET  +  
Sbjct: 71  WQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCETFLLAL 128

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G  LS M +   +     I RP L   R ++  +  Q ++ W ED SN DD +
Sbjct: 129 KRGSGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWARQYDLRWIEDESNQDDFY 185

Query: 200 ER 201
           +R
Sbjct: 186 DR 187


>gi|307248585|ref|ZP_07530600.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306854935|gb|EFM87123.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 413

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 151/348 (43%), Gaps = 36/348 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + ++ +SGG DS+ LL  L  +  +         A+ + H L   A     +   VC RL
Sbjct: 19  NFVLGLSGGIDSIVLLHLLAELQLN-------LRAVHIHHGLSPNADSWAAFCEQVCKRL 71

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++         G+ A AR ARY  I E  +  N  L+ TAH  DDQ ET  +  +
Sbjct: 72  KIPF-ILQKVTVDRSEGIEAGARAARYQAIGEIIQP-NEVLV-TAHHLDDQTETFLLALK 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M   + +  N  I RP L   +  I  + LQ+  +W ED SN D  ++
Sbjct: 129 RGSGIKG--LSAM-QAVGFWQNFTIFRPLLNVSKAQIEQYALQQQFTWIEDESNHDSHYD 185

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDIL 257
               R F+R+  L  +  + + F  +  +     A   ML+ + L   ++     S+  L
Sbjct: 186 ----RNFLRNEVLPIVNQRWQHFSQMVARSAQHCAEQQMLLEELLAQELQRYADFSEKRL 241

Query: 258 NIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308
           NI++   F       L+R+    CG Q  +P    + +++   ++    K   + +    
Sbjct: 242 NIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQIIQQTIYADVDKNPQLKLADFW 299

Query: 309 IDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQFQNLSDSLI 352
           + R  + L++T  +   P     P    +  T+ DG  + Q+L DS+I
Sbjct: 300 LRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGELQHLGDSII 346


>gi|254832460|ref|ZP_05237115.1| hypothetical protein Lmon1_13981 [Listeria monocytogenes 10403S]
          Length = 648

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A  E R V   C R  
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSDLVPKEAISVAHLNHQLRENAAKEQRVVETFCERQG 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    +  +    Q GL   AR  RY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMTEKNINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I  +  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|282860306|ref|ZP_06269375.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010]
 gi|282586903|gb|EFB92139.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010]
          Length = 455

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 27/192 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77
           LVA+SGG+DS+ LL+ LH         K+ + A+   HC   LR  E+ +DE ++  D+C
Sbjct: 22  LVALSGGADSVCLLLILH---------KLGY-AVEAAHCNFKLRGEESNRDE-QFCIDLC 70

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   ++ +   +     +  +  AAR+ RY    +  + I+A  I   H  DD +E
Sbjct: 71  KRQNIKIHLIHFDTREYAALKKISIEMAARDLRYRYFEQLCRDIDAAGICVGHHQDDSVE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G G+ G+  T +  +N  I RP L C +EDI ++L     ++  D S
Sbjct: 131 TILLNLVR-----GTGIKGL--TGIKPINGLIIRPLLVCSKEDINAYLKAEGATYITDSS 183

Query: 194 NTDDRFERVRVR 205
           N      R ++R
Sbjct: 184 NLVPDVMRNKIR 195


>gi|323705585|ref|ZP_08117159.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535062|gb|EGB24839.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 460

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           I+V VSGG DS+ LL  L  +   +   K+K   + V+H LR    D +  +V   C  +
Sbjct: 21  IVVGVSGGPDSICLLNLLLEI---KERYKLKLFVVHVNHMLRGADADSDALFVEKFCKGI 77

Query: 81  RIAHSVVSW--KNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   +     +    + GL   AA RE RY+  ++  K +    I  AH  +D  ETV 
Sbjct: 78  NIPFFLFKEDVRRYAEENGLSEEAAGREIRYSAFNKVLKEVGGNKIAIAHNKNDVAETVL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G +G+    +  +N  I RP ++ +R +I  +L  +N+ + ED +N +
Sbjct: 138 LNILR-----GAGTTGLVG--IKPVNGCIIRPLIQTKRREIIDYLNSKNLEFVEDVTNKE 190

Query: 197 DRFERVRVR 205
           D + R R+R
Sbjct: 191 DAYRRNRIR 199


>gi|160886327|ref|ZP_02067330.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483]
 gi|156108212|gb|EDO09957.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483]
          Length = 426

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 39/320 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA+SGG+DS+ LL  LH+           F         +E+ +DE+ +V  +C R+ 
Sbjct: 22  ILVALSGGADSVALLYILHTAGYHCEAAHCNFHLRG-----KESDRDEL-FVRQLCERME 75

Query: 82  IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I    + +  ++  T     +  AARE RY    +  K   A ++  AH  DD +ET+ +
Sbjct: 76  IHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQADVVAVAHHQDDSIETILL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+    +   N  I RP L   RE+I  +L      +  D +N +D
Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGTIVRPLLCINREEIIRYLQNIGQDYVTDSTNLED 188

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ 254
            + R ++R       L+ L L     Q++   V N +   +  +    T++ + I    +
Sbjct: 189 EYTRNKIR-------LNLLPL----MQEINPSVKNTLIDTSNYLNDVATIYNKCIEETKK 237

Query: 255 DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSME----RVMLFLKSGKRGCVSIGRVV 308
            I+  +   +  L++  A  AI    +   G+ S +       L  + GK+ C    RV+
Sbjct: 238 KIITAEGIRICDLVKEPAPEAILFEVLHPLGFNSAQIKDITHSLHSQPGKQFCSKEWRVI 297

Query: 309 IDRRANFLWITRAVRNLPTL 328
            DR   FL I  A     TL
Sbjct: 298 KDRE--FLLIETAESENETL 315


>gi|255030074|ref|ZP_05302025.1| hypothetical protein LmonL_15194 [Listeria monocytogenes LO28]
          Length = 275

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A  E R V   C R  
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFCERQG 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    +  +    Q GL   AR  RY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I  +  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|260173564|ref|ZP_05759976.1| putative cell-cycle protein [Bacteroides sp. D2]
 gi|315921832|ref|ZP_07918072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2]
 gi|313695707|gb|EFS32542.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2]
          Length = 426

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 39/320 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA+SGG+DS+ LL  LH+           F         +E+ +DE+ +V  +C R+ 
Sbjct: 22  ILVALSGGADSVALLYILHTAGYHCEAAHCNFHLRG-----KESDRDEL-FVRQLCERME 75

Query: 82  IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I    + +  ++  T     +  AARE RY    +  K   A ++  AH  DD +ET+ +
Sbjct: 76  IHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQADVVAVAHHQDDSIETILL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+    +   N  I RP L   RE+I  +L      +  D +N +D
Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGTIVRPLLCINREEIIRYLQNIGQDYVTDSTNLED 188

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ 254
            + R ++R       L+ L L     Q++   V N +   +  +    T++ + I    +
Sbjct: 189 EYTRNKIR-------LNLLPL----MQEINPSVKNTLIDTSNYLNDVATIYNKCIEETKK 237

Query: 255 DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSME----RVMLFLKSGKRGCVSIGRVV 308
            I+  +   +  L++  A  AI    +   G+ S +       L  + GK+ C    RV+
Sbjct: 238 KIITAEGIRISDLVKEPAPEAILFEVLHPLGFNSAQIKDITHSLHSQPGKQFCSKEWRVI 297

Query: 309 IDRRANFLWITRAVRNLPTL 328
            DR   FL I  A     TL
Sbjct: 298 KDRE--FLLIETAESENETL 315


>gi|238897452|ref|YP_002923129.1| putative ATPase of the PP-loop superfamily [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259533725|sp|C4K338|TILS_HAMD5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|229465207|gb|ACQ66981.1| putative ATPase of the PP-loop superfamily [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 457

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 13/208 (6%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----- 62
           S+   +++L      LVA SGG DS  LL  L S L D++  K+   AI     L     
Sbjct: 8   SLTTLLKNLGKHHKFLVAFSGGLDSTVLLHGLLS-LRDQNHLKLNIRAIHTHEKLIHRPE 66

Query: 63  --RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
              + A   + +    C + ++   VV  +      G+ AAAR  RY + S   K     
Sbjct: 67  NWSKDADQRLTHCQSQCEQWKVPLEVVKMEVEPRGKGIEAAARTVRYQIFSNALK--KDE 124

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++T H  +DQ ETV +  +R       GLSGM   +    +  + RP L   R  ++ +
Sbjct: 125 VLLTGHHQNDQCETVLLALKRGSGP--AGLSGMPLAMPLGQSQ-LLRPQLSFSRHSLQLY 181

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
            L++ I W ED  N +DRF+R  +RR +
Sbjct: 182 ALEKGILWMEDEDNQNDRFDRNFLRRHI 209


>gi|327399626|ref|YP_004340495.1| tRNA(Ile)-lysidine synthase [Hippea maritima DSM 10411]
 gi|327182255|gb|AEA34436.1| tRNA(Ile)-lysidine synthase [Hippea maritima DSM 10411]
          Length = 322

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VAVSGG DS+ +L+ L+++    +   ++ + +  +H LRE A+DE  +V  + S L 
Sbjct: 24  IGVAVSGGPDSVFMLMLLNTLAQKYT---LELAVLHFNHKLREEAEDEEIFVGKLASSLG 80

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    A   V   + + +  +   AR  RY    E    +N  +I T HT DD  ET+ M
Sbjct: 81  LKFLKAEYDVGAFSRQNKLSIEDGARRKRYEFFYESKTKLNLDVIATGHTKDDVAETLLM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R  +  G+       + L     +  RP L   +++I +FL + NI +  D SN D 
Sbjct: 141 NLIRGSSTDGL-------SSLKPKRGFFIRPILCFEKQEILNFLNKNNIQYKIDNSNADT 193

Query: 198 RFERVRVR 205
            F+R ++R
Sbjct: 194 YFKRNKIR 201


>gi|210623231|ref|ZP_03293670.1| hypothetical protein CLOHIR_01620 [Clostridium hiranonis DSM 13275]
 gi|210153768|gb|EEA84774.1| hypothetical protein CLOHIR_01620 [Clostridium hiranonis DSM 13275]
          Length = 461

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 16/194 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSD 75
           Y   I+V +SGG DS+ LL  L+ +   R+   +K  A  ++H +R  E  KD + +VS+
Sbjct: 18  YGDKIIVGLSGGPDSVCLLHILNRLKESRN---LKIYAAHLNHQIRGIEAQKDAL-FVSE 73

Query: 76  VCSRLRIAHSVVSWKNSK--PQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +C  L I   + S    K   + GL     AR  RY +  E  +   A  I   H  +DQ
Sbjct: 74  LCDSLEIPVFIKSVDVPKYCEEKGLSLEEGARNIRYDMFYEIKRRTGANKIAIGHNMNDQ 133

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV MR  R     G GL G+   I Y     I RP L   R+DI ++  Q  +    D
Sbjct: 134 AETVMMRIMR-----GTGLQGLR-GIEYTRENGIIRPILDIERKDIEAYCEQHELHPKID 187

Query: 192 PSNTDDRFERVRVR 205
            +N +  + R R+R
Sbjct: 188 QTNLESIYTRNRIR 201


>gi|260767808|ref|ZP_05876743.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii CIP 102972]
 gi|260617317|gb|EEX42501.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii CIP 102972]
          Length = 432

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 11/193 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + ++A SGG DS  LL  +     +R    I   A+ V H L   A +  +     C   
Sbjct: 18  YFVLAFSGGVDSRVLLALIARYRQERD---ISVQAVHVHHGLSVNADEWAQRCQHWCQAA 74

Query: 81  RIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            +  ++  VS   +  ++ +   AREARYA ++ H     +TL++  H  DDQLET  + 
Sbjct: 75  HVPLAIERVSLATASGES-IEKLAREARYAALATHMHP-GSTLLLGQHA-DDQLETFLLA 131

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    KG  L+ M     +     + RP L   R  I  F LQ ++ W ED SN D+R
Sbjct: 132 LKRGSGPKG--LASMAQQAPFSCGQ-LLRPLLSVSRAQIEHFALQHHLQWVEDESNQDER 188

Query: 199 FERVRVRRFVRDI 211
           +ER  +R  V  I
Sbjct: 189 YERNFLRHRVTPI 201


>gi|94310033|ref|YP_583243.1| tRNA(Ile)-lysidine synthetase-like protein [Cupriavidus
           metallidurans CH34]
 gi|93353885|gb|ABF07974.1| tRNA(Ile)-lysidine synthetase [Cupriavidus metallidurans CH34]
          Length = 487

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 6/190 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VA+SGG DS+ LL A    L+  ++   +  A+ V H L+  A D  R+ +  C 
Sbjct: 47  PVTVAVALSGGRDSVALLHATREALAA-TWPLARLVALHVHHGLQAQADDWDRFCTARCG 105

Query: 79  RLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            L++  S       +    G+ AAAR AR+  +    +   A L++ AH  DDQ+ETV +
Sbjct: 106 DLQVPLSSARVTVQAATGEGIEAAARRARHEALGRMCREQGARLLLFAHHRDDQVETVLL 165

Query: 138 RSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           R  R     GM  +GM      D   ++ + RP+L   R +I  +   + + W +DPSN 
Sbjct: 166 RLFRGTGVAGM--AGMPARRPLDERGDIQLVRPWLGVTRAEIDDYCAWQGLRWIDDPSNA 223

Query: 196 DDRFERVRVR 205
           D RF R  +R
Sbjct: 224 DTRFARNALR 233


>gi|296117358|ref|ZP_06835948.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976124|gb|EFG82912.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 440

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 14/227 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG+DS+ L     ++L+ R   +     + VDH LR  + DE        + + 
Sbjct: 41  VAIAVSGGADSLAL-----ALLTRRW--RRAVVGLVVDHGLRAESADEAARTVRCLAEMD 93

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   ++  +       +   AR  RY  +    + +    ++  H  DDQ ETV MR + 
Sbjct: 94  IPARLLRLRGLLRGPRMAERARRLRYQALCHACRELGCLDLLLGHHGDDQAETVMMRQRA 153

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  L+ M   +    ++   RP L   + D+ + L    I W EDPSNTD R ER
Sbjct: 154 SSGPDG--LAAMAQAV-AGTDVRFVRPLLGVCKADLYATLRHAGIDWVEDPSNTDLRTER 210

Query: 202 VRVRRFVR-DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            R R  +  D  L  + L+  +    R    +A      ++L  H R
Sbjct: 211 ARARHALSTDAQLRRVCLQTAQQAGGRRMARDAQDA---QWLAAHAR 254


>gi|238792737|ref|ZP_04636368.1| tRNA(Ile)-lysidine synthase [Yersinia intermedia ATCC 29909]
 gi|238727845|gb|EEQ19368.1| tRNA(Ile)-lysidine synthase [Yersinia intermedia ATCC 29909]
          Length = 455

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 6/185 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LV  SGG DS  LL  L   L  +   ++K  AI + H L   A   V++    C + 
Sbjct: 24  HVLVGFSGGLDSSVLLHLL-VSLRQQLLPELKVRAIHIHHGLNPLADCWVKHCQQQCDQW 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +   VV         G+ AAAR ARY   S H       +++TA   DDQ ET  +  +
Sbjct: 83  DVPLEVVRVNIDPRHNGIEAAARTARYQAFSSHLAA--NEVLLTAQHLDDQCETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN D+RF+
Sbjct: 141 RGSGPA--GLSSMAGRMPFAHSQ-LLRPLLAFSRETLENYAQVQQLRWIEDDSNQDNRFD 197

Query: 201 RVRVR 205
           R  +R
Sbjct: 198 RNFLR 202


>gi|114562464|ref|YP_749977.1| tRNA(Ile)-lysidine synthetase [Shewanella frigidimarina NCIMB 400]
 gi|114333757|gb|ABI71139.1| tRNA(Ile)-lysidine synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 488

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 8/185 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS  L   L ++        I    I V H L   A   V++     +  +
Sbjct: 41  LVLAYSGGVDSEVLACGLSALAHKHPH--IACLLIHVHHGLSANADIWVQHCITRANHYQ 98

Query: 82  IAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +   K  K P+  L A AR+ARY     +       +++TAH  DDQLET+ +  +
Sbjct: 99  LPVQIERVKVEKGPRQSLEAQARDARYQAFDRYLNP--GDILLTAHHQDDQLETLLLALK 156

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG+   G    I      W+ RP L   R+ I  F  Q+ +S  ED SN DD F+
Sbjct: 157 RGQGPKGLAAMG---AIQAYKQAWLVRPLLDISRDQIEQFAAQKQLSHIEDESNQDDSFD 213

Query: 201 RVRVR 205
           R  +R
Sbjct: 214 RNFLR 218


>gi|253988142|ref|YP_003039498.1| tRNA (Ile)-lysidine synthetase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779592|emb|CAQ82753.1| tRNA (ile)-lysidine synthase [Photorhabdus asymbiotica]
          Length = 442

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 17/203 (8%)

Query: 10  RFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           R FV   + L     ILV  SGG DS  LL  L +   ++    ++  AI + H L   A
Sbjct: 7   RLFVTLTKQLGEHKKILVGFSGGLDSSVLLYLLVN-WRNQYNQNVQLRAIHIHHGLNIKA 65

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              V++   +C   ++            Q G+ AAAR+ARY +     +     +++TA 
Sbjct: 66  DQWVKHCQQICDDWQVEFFFEKVTIDARQKGIEAAARDARYQVFKRELQ--KDEILVTAQ 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             DDQ ET  +  +R     G+     ++   DT+L        RP L   R ++  +  
Sbjct: 124 HLDDQAETFLLALKRGSGPAGLASMPPIAVFADTLLL-------RPLLGYSRNELEIYAN 176

Query: 183 QRNISWCEDPSNTDDRFERVRVR 205
           +  ++W ED SN DDR++R  +R
Sbjct: 177 EHCLNWIEDDSNQDDRYDRNFLR 199


>gi|320160301|ref|YP_004173525.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1]
 gi|319994154|dbj|BAJ62925.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1]
          Length = 476

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 16/194 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDVCS- 78
           +++ VSGG+DS+ LL  LH         +  F+ I    +H LR  A+ E  +V      
Sbjct: 23  LVLGVSGGADSLCLLDVLH---------RAGFNLIVAHFNHRLRPEAESEADWVCAQAQQ 73

Query: 79  ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              R+ +    V     +    +  AAREARY+ +   A  + A  +  AHT  DQ+ETV
Sbjct: 74  RGLRVELGQGEVLAMAKEQGMSIEEAAREARYSFLFSVAHQVQAQAVAVAHTASDQVETV 133

Query: 136 YMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            M   R    KG+ G+        +     + RP L   RE++ ++  +R ++W EDPSN
Sbjct: 134 LMHLIRGTGHKGLTGMPYRGFLNQFSTTTPLVRPMLSIWREEVLAYCHERGLTWLEDPSN 193

Query: 195 TDDRFERVRVRRFV 208
            D RF R R+R  V
Sbjct: 194 RDVRFTRNRLRNEV 207


>gi|292492700|ref|YP_003528139.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus halophilus Nc4]
 gi|291581295|gb|ADE15752.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus halophilus Nc4]
          Length = 442

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 6/197 (3%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+R L +     VA SGG DS  LL +L  V        I  SA  VDH L   +    +
Sbjct: 11  FLRQLHFCHGYRVAYSGGLDSQVLLYSL--VQLRPQLPGIALSAFHVDHGLSSRSGQWSQ 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + CS L +   V+   N++P  G    A        +   +      ++T    DDQ
Sbjct: 69  HCRETCSELGVGCEVIK-VNARPAKGESPEAAAREARYAALRTRVEKGECLLTGQHQDDQ 127

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV ++  R     G  L+ M   + +   L + RP L   R +++++  Q  + W ED
Sbjct: 128 AETVLLQLLRGAGPHG--LAAMARVMPFGEGL-LLRPLLPFSRAELKAYAEQEGLVWIED 184

Query: 192 PSNTDDRFERVRVRRFV 208
           PSN D  F+R  +R  V
Sbjct: 185 PSNFDVGFDRNYLRHHV 201


>gi|146292467|ref|YP_001182891.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens CN-32]
 gi|145564157|gb|ABP75092.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens CN-32]
          Length = 465

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 22/206 (10%)

Query: 9   VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           V  F+ SL   A   +++A SGG DS  L   L      + +G++++  + V H L + A
Sbjct: 10  VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQYGELQYQLVYVHHGLSQHA 67

Query: 67  KDEVRYVSDVCSRLR-------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
                +     +R +       I H  V      P+  + A AR  RY  I +H  + + 
Sbjct: 68  D---AWAQHCITRGQHYGLPTIIEHVQV---KQGPRMSIEAEARRMRYQAIEQHVGSDD- 120

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            L++TAH  DDQLET+ +  +R    KG+   G    ++  + +   RP L   RE I +
Sbjct: 121 -LLLTAHHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQV---RPLLDVSREHIEA 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
           +     +   ED SN DD+++R  +R
Sbjct: 177 YASANGLVHIEDESNQDDKYDRNFLR 202


>gi|304409578|ref|ZP_07391198.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS183]
 gi|307303936|ref|ZP_07583689.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica BA175]
 gi|304352096|gb|EFM16494.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS183]
 gi|306912834|gb|EFN43257.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica BA175]
          Length = 486

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +SL     +++A SGG DS  L   L      R   +  +  + V H L + A+   ++
Sbjct: 24  AQSLAPRCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFSYQLVYVHHGLSDNAEVWAQH 81

Query: 73  VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +      +  +V     N  P+  L A AR+ RY  I  H    +  +++TAH  DDQ
Sbjct: 82  CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAND--VLLTAHHEDDQ 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET+ +  +R    KG+   G    +     L   RP L   RE I ++  Q+ +   ED
Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQVLAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196

Query: 192 PSNTDDRFER 201
            SN DD+++R
Sbjct: 197 ESNQDDKYDR 206


>gi|271499513|ref|YP_003332538.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech586]
 gi|270343068|gb|ACZ75833.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech586]
          Length = 448

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 8/186 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS    + LH +   R    +   A+ V H L   A     +    C   ++
Sbjct: 26  LVAYSGGLDST---VLLHVMTRLRLPRALSLRAVYVHHGLSVNADAWAEHCRTQCINWQV 82

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
             +V++ K      G+ AAAR ARY ++ +H        ++TA   DDQ ET  +  +R 
Sbjct: 83  PFNVLAVKVDARDGGIEAAARTARYQVLHQH--LCEGETLLTAQHQDDQSETFLLALKRG 140

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G+  S      L  + L   RP L   RE +  +     + W ED SN D+R++R 
Sbjct: 141 SGPAGLA-SMAASATLNGVTL--LRPLLGISREQLEGYARAHQLVWVEDDSNADERYDRN 197

Query: 203 RVRRFV 208
            +RR V
Sbjct: 198 FLRRQV 203


>gi|50119989|ref|YP_049156.1| tRNA(Ile)-lysidine synthetase [Pectobacterium atrosepticum
           SCRI1043]
 gi|61216498|sp|Q6D8C5|TILS_ERWCT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49610515|emb|CAG73960.1| cell cycle protein [Pectobacterium atrosepticum SCRI1043]
          Length = 440

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A SGG DS    + LH +++ R        A  + H L   A     +    C R +
Sbjct: 24  ILLAYSGGLDSS---VLLHLLVTVRQRSGQTIRAAYIHHGLNPLADSWAEHCRQQCERWQ 80

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  S ++        G+ AAAR ARY  +  H K      ++TA   DDQ ET  +  +R
Sbjct: 81  VPFSSLAVTVEAQNGGIEAAARTARYQALQVHLK--EGETLLTAQHLDDQSETFLLALKR 138

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS M        +  + RP L   R  + ++  +  + W ED SN D+RF+R
Sbjct: 139 GSGPAG--LSAMAANSFLGHHR-LVRPLLGFSRLQLEAYAQRHQLRWIEDDSNQDERFDR 195

Query: 202 VRVRRFV 208
             +RR +
Sbjct: 196 NFLRRQI 202


>gi|302791165|ref|XP_002977349.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii]
 gi|300154719|gb|EFJ21353.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii]
          Length = 1167

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 33/273 (12%)

Query: 22  ILVAVSGGSDSMGL-LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + +AVSGG+DSM L L+AL    S     K     ++VDH  R  + +EV  V +    L
Sbjct: 49  VAIAVSGGADSMALCLLALEWTES-----KSLVFGLTVDHGFRRESAEEVVQVREWLRTL 103

Query: 81  RIAHSVV--SWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +   ++  SW+   P  G L  +AR+ARY L+ E  +   A +++TAH  DDQ E   +
Sbjct: 104 GMECEILKCSWQGGFPSPGHLQESARKARYELLQEACQRNGAGVLLTAHHADDQAELFAL 163

Query: 138 RSQRDYAEKGMGLSGMCD-------TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           R  R   + G+    +         +I+    L + RP L  +++D+ +     + SW E
Sbjct: 164 RLSRCSGDNGLACMALASELFPIMPSIIEASRLLLVRPLLDLQKKDLYNVCHVADQSWIE 223

Query: 191 DPSNTDDRFERVRVRRFVRDI---------DLHALYLKMKKFQDLRVKVNNAVAMLIP-- 239
           DP+N    + R ++R+ +  +         DL A Y   KK  ++ V+    +   +   
Sbjct: 224 DPTNCKTIYARNKIRKELVSLSDSMRSEVQDLIATY--RKKRSEIHVQTKMLMTTFVHID 281

Query: 240 ---KYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
               Y  V    ++A + D   ++ TLL  +LR
Sbjct: 282 LDYGYAVVDAEGLLAETNDTTVLE-TLLASVLR 313


>gi|283783975|ref|YP_003363840.1| tRNA(Ile)-lysidine synthase [Citrobacter rodentium ICC168]
 gi|282947429|emb|CBG86975.1| tRNA(Ile)-lysidine synthase [Citrobacter rodentium ICC168]
          Length = 432

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 9/188 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYV 73
           SL     ILVA SGG DS    + LH ++  R+   +++  AI + H L   A + V + 
Sbjct: 9   SLFNRPQILVAFSGGLDST---VLLHQLVQWRALRPELRLRAIHIHHGLSPHADEWVAHC 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             VC+R ++   V   + +    G+ A AR+ARY   ++        ++ TA   DDQ E
Sbjct: 66  EAVCARWQVPLMVRRVQLADEGLGIEALARQARYQAFAQ--ALAPGEILATAQHLDDQCE 123

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G  LS M +   +  +  + RP L   R  +  +  + ++ W ED S
Sbjct: 124 TFLLALKRGSGPAG--LSAMAEVSAFADSR-LVRPLLTQSRTALEQWAREHSLCWIEDES 180

Query: 194 NTDDRFER 201
           N DD ++R
Sbjct: 181 NQDDAYDR 188


>gi|212703024|ref|ZP_03311152.1| hypothetical protein DESPIG_01062 [Desulfovibrio piger ATCC 29098]
 gi|212673612|gb|EEB34095.1| hypothetical protein DESPIG_01062 [Desulfovibrio piger ATCC 29098]
          Length = 351

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG+DS  LL  +  +L+ R   ++  +  +VDH LR  + ++  +V+ +C   RI
Sbjct: 38  LLAVSGGADSTALLFIM-VLLAPRHNWRLHVA--TVDHQLRPESAEDTAFVARLCQDWRI 94

Query: 83  AHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              +++   ++   Q GL    AAR ARYAL+ +      AT I+  H   D  E   +R
Sbjct: 95  PCRILTADVARLARQDGLGTEEAARLARYALLEQARLACGATAILLGHHRSDVAEDQLLR 154

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G G   +      D    + RP LR     ++  L    I W ED SN D R
Sbjct: 155 FLR-----GTGWPALGGMRAEDAERHLLRPLLRTDNRALKELLHHCGILWREDSSNADTR 209

Query: 199 FERVRVRRFV 208
           + R R+R  V
Sbjct: 210 YTRNRLRHTV 219


>gi|240949808|ref|ZP_04754137.1| cell-cycle protein MesJ [Actinobacillus minor NM305]
 gi|240295725|gb|EER46420.1| cell-cycle protein MesJ [Actinobacillus minor NM305]
          Length = 423

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 15/196 (7%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +L +P     LVA+SGG DS+ LL  L+ +  +         AI + H L   A   V +
Sbjct: 16  ALHFPTQKRFLVALSGGIDSVVLLYLLNQLKLE-------LRAIHIHHGLSPNADQWVTF 68

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               C +  I    V +     + G+ A ARE RY  I E  +  +  +++TAH  DDQ+
Sbjct: 69  CQHYCQQHAIP-LCVKYVQVNGKKGIEAEAREKRYQAIREVRE--HNEVVVTAHHLDDQV 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M   + +  N  I RP L   + DI ++   +N+SW ED 
Sbjct: 126 ETFLLALKRGSGVKG--LSAM-QVVNFSQNFPIFRPLLAISKNDILTYAKSQNLSWIEDE 182

Query: 193 SNTDDRFERVRVRRFV 208
           SN    ++R  +R  V
Sbjct: 183 SNQSTDYDRNFLRHKV 198


>gi|298484345|ref|ZP_07002506.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22]
 gi|298269499|gb|EFI11099.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22]
          Length = 426

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +L+A+SGG+DS+ LL  LH+           F          E+ +DE+ +V  +C R
Sbjct: 20  AKVLIALSGGADSVALLCILHTAGYHCEAAHCNFHLRG-----EESDRDEL-FVRQLCKR 73

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I    + +  ++     Q  +  AARE RY    +  K   A +I  AH  DD +ET+
Sbjct: 74  TGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQADVIAVAHHQDDSVETI 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G G++G+    +   N  I RP L   REDI  +L      +  D +N 
Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNREDIIHYLESIGQDYVTDSTNL 186

Query: 196 DDRFERVRVR 205
           +D + R ++R
Sbjct: 187 EDEYTRNKIR 196


>gi|330991882|ref|ZP_08315831.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1]
 gi|329760903|gb|EGG77398.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1]
          Length = 425

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 15/193 (7%)

Query: 18  YPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           +P H   + VAVSGG+DSM L +       D          + VDH LR  ++ E     
Sbjct: 27  WPGHGVPVAVAVSGGADSMALAVLARQWRPD-------VVGLVVDHGLRAESRREAEQTI 79

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              S L ++  ++  +  +    +   AR  RYA +S   + I A  ++ AH   DQ ET
Sbjct: 80  GRLSALGLSARLLVLEGLERGPRMAERARRMRYAALSAACREIGALDLLVAHHAGDQAET 139

Query: 135 VYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           V MR      +   GL+GM   T ++D+ L   RP L   +  + + +    ++W EDPS
Sbjct: 140 VMMRQHAASGDD--GLAGMALVTPMHDVRL--VRPLLSFAKPALYATVRAAGLAWVEDPS 195

Query: 194 NTDDRFERVRVRR 206
           N D R  R R R+
Sbjct: 196 NADLRTGRARARQ 208


>gi|237712941|ref|ZP_04543422.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409616|ref|ZP_06086156.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643471|ref|ZP_06721284.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a]
 gi|294807915|ref|ZP_06766696.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b]
 gi|229447060|gb|EEO52851.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352469|gb|EEZ01569.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641190|gb|EFF59395.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a]
 gi|294444913|gb|EFG13599.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b]
          Length = 426

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +L+A+SGG+DS+ LL  LH+           F          E+ +DE+ +V  +C R
Sbjct: 20  AKVLIALSGGADSVALLCILHTAGYHCEAAHCNFHLRG-----EESDRDEL-FVRQLCKR 73

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I    + +  ++     Q  +  AARE RY    +  K   A +I  AH  DD +ET+
Sbjct: 74  TGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQADVIAVAHHQDDSVETI 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G G++G+    +   N  I RP L   REDI  +L      +  D +N 
Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNREDIIHYLESIGQDYVTDSTNL 186

Query: 196 DDRFERVRVR 205
           +D + R ++R
Sbjct: 187 EDEYTRNKIR 196


>gi|148981150|ref|ZP_01816312.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3]
 gi|145960977|gb|EDK26302.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3]
          Length = 443

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 17/283 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F +S + P  ++VA SGG DS  +L+ L +  +     +I   AI V H L + A     
Sbjct: 12  FDQSAIKPHRLVVAFSGGVDSR-VLLELAAQYTKTH--EIDCQAIHVHHGLSDNADQWAE 68

Query: 72  YVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                C  L +  +V     + +    +   AR+ARY     H +     +++T    DD
Sbjct: 69  QCQVWCDDLSVPLAVERVSLDVRSGESIEKLARDARYNAFKSHLR--QGDVLVTGQHVDD 126

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q+ET  +  +R    KG  LS M   + +     I RP L   R +I +F  +  ++W E
Sbjct: 127 QVETFLLALKRGSGPKG--LSSMAKVMPFS-GAHIVRPMLSVTRAEIEAFARRMGLTWVE 183

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN D RF+R  +R  V  + L   +   ++      ++     ML+ + L  H++  +
Sbjct: 184 DESNQDVRFDRNFIRHQVTPL-LTERWPSFRESVSRSAQLCAEQEMLLDELLASHLQRAL 242

Query: 251 ----AISQDILNIDSTLL-FYLLRVSAAICGGQISLPGYRSME 288
               ++S ++L+  S LL   LLR+    C  Q ++P  + ++
Sbjct: 243 GDDQSLSVEVLSEQSALLRARLLRMWLGHC--QQAMPSQKQLQ 283


>gi|300824089|ref|ZP_07104209.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 119-7]
 gi|300523366|gb|EFK44435.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 119-7]
          Length = 432

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|290473675|ref|YP_003466547.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii SS-2004]
 gi|289172980|emb|CBJ79751.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii SS-2004]
          Length = 449

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 13/186 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFG----KIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +LV  SGG DS  LL  L  +      G    +I+  AI + H L   A   V +   +C
Sbjct: 22  VLVGFSGGLDSTVLLHLLVQLRYQSHSGVIRDQIELRAIHIHHGLNPKADKWVEHCRQIC 81

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +  ++   V        Q G+ AAAR+ARY       +     +++TA   DDQ ET  +
Sbjct: 82  ADWKVDFRVEKVSLDIRQNGIEAAARDARYQAFQHELQ--QGEILVTAQHLDDQAETFLL 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             +R     G G +G+            +  RP L   R ++ ++   + + W ED SN 
Sbjct: 140 ALKR-----GSGPAGLSSMPSSMPFSGTTLIRPLLNASRAELETYAQTQRLQWIEDDSNQ 194

Query: 196 DDRFER 201
           DDR++R
Sbjct: 195 DDRYDR 200


>gi|229542263|ref|ZP_04431323.1| tRNA(Ile)-lysidine synthetase [Bacillus coagulans 36D1]
 gi|229326683|gb|EEN92358.1| tRNA(Ile)-lysidine synthetase [Bacillus coagulans 36D1]
          Length = 478

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 8/123 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
           H+LVAVSGG DS+ LL   H + S R   ++K +A  V+H LR E +  ++ +V   C  
Sbjct: 23  HLLVAVSGGPDSLALL---HFLTSRRERFRVKITAAHVNHMLRGEASCKDLLFVKSFCES 79

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            RI    A   V  K  +   G+  AAR+ RYA ++E  +   A  ++  H  DDQ+ETV
Sbjct: 80  HRIGCEAAEIPVLEKAKEEGLGIEEAARKYRYAFLAEAMEKTGANKVVLGHHGDDQMETV 139

Query: 136 YMR 138
            MR
Sbjct: 140 LMR 142


>gi|312792833|ref|YP_004025756.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179973|gb|ADQ40143.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 456

 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+  SGG DSM LL  +  +  + S   +  +   ++H LR  A D+ ++V ++C R  
Sbjct: 23  VLIGCSGGVDSMVLLNCICRLKDEYS---LDITVAHLNHMLRPEADDDEKFVIEICKRYN 79

Query: 82  IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I      V     K + GL    A R ARY+   E A+ +N   I+  H  +D +ET ++
Sbjct: 80  IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEVAEELNIDRILLGHNKNDVVETFFL 139

Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              R     G GL G+     + D+   I+RP +   RE+I  F    NI +  D +N  
Sbjct: 140 NLFR-----GSGLEGLASVPPVRDI---IARPLINISREEIEEFARVNNIPFVVDKTNFS 191

Query: 197 DRFERVRVR 205
            +++R  VR
Sbjct: 192 LKYKRNIVR 200


>gi|167751544|ref|ZP_02423671.1| hypothetical protein EUBSIR_02545 [Eubacterium siraeum DSM 15702]
 gi|167655352|gb|EDR99481.1| hypothetical protein EUBSIR_02545 [Eubacterium siraeum DSM 15702]
          Length = 324

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 17/191 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++ AVSGG+DS+ LL  L+S+  +  F     +A  V+H LR E +  + R+V  +C  L
Sbjct: 26  VIAAVSGGADSVALLYVLYSLKDELGFS---LAACHVNHNLRGEESDSDERFVRRMCRFL 82

Query: 81  RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            I     S K +   +    L   AR  RY      +K     LI TAHT  D  ET+ +
Sbjct: 83  DIPLYTASIKVNDLRQKHDSLEECARRLRYDFFESISK---GRLIATAHTASDNCETILI 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G  LSG+C       N  I RP L   REDI  +  +  + +  D +N  D
Sbjct: 140 NMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDSTNLSD 192

Query: 198 RFERVRVRRFV 208
            + R ++R  V
Sbjct: 193 DYTRNKIRHKV 203


>gi|295087951|emb|CBK69474.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Bacteroides xylanisolvens
           XB1A]
          Length = 426

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +L+A+SGG+DS+ LL  LH+           F          E+ +DE+ +V  +C R
Sbjct: 20  AKVLIALSGGADSVALLCILHTAGYHCEAAHCNFHLRG-----EESDRDEL-FVRQLCKR 73

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I    + +  ++     Q  +  AARE RY    +  K   A +I  AH  DD +ET+
Sbjct: 74  TGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQADVIAVAHHQDDSVETI 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G G++G+    +   N  I RP L   REDI  +L      +  D +N 
Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNREDIIHYLESIGQDYVTDSTNL 186

Query: 196 DDRFERVRVR 205
           +D + R ++R
Sbjct: 187 EDEYTRNKIR 196


>gi|238855042|ref|ZP_04645370.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 269-3]
 gi|260664826|ref|ZP_05865677.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934828|ref|ZP_06340062.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1]
 gi|238832286|gb|EEQ24595.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 269-3]
 gi|260561309|gb|EEX27282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301100|gb|EFA93410.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1]
          Length = 412

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 20/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA S G DS+ L+     +L D     +K      DH +RE +  E + +   C + +
Sbjct: 20  VIVACSAGPDSLALV----DMLKDWP---LKLIVAHFDHQIREDSYLETKLLQQYCQKNK 72

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V  W  SK      AAAREARY  + E AK+ +A  ++TAH  DD LE + ++  R
Sbjct: 73  LMLCVEKW--SKHVNKTEAAAREARYNFLLELAKSWHADYLLTAHHGDDYLENILLKLIR 130

Query: 142 --DYAEKG--MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             D AE      +  M    L       +RP L   + ++  +LL +++++  D +N  +
Sbjct: 131 SGDPAEMSSLQAVGQMAGVKL-------ARPLLYYSKAELTKYLLDKHLAFITDETNLTN 183

Query: 198 RFERVRVRRFV 208
              R R+R  V
Sbjct: 184 ENLRNRIRHQV 194


>gi|319425769|gb|ADV53843.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens 200]
          Length = 465

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 12/201 (5%)

Query: 9   VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           V  F+ SL   A   +++A SGG DS  L   L      + +G++++  + V H L + A
Sbjct: 10  VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQYGELQYQLVYVHHGLSQHA 67

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIMT 124
               ++         +  +++     K  P+  + A AR  RY  I +H  + +  L++T
Sbjct: 68  DAWAQHCITRGQHYGLP-TIIEHVQVKLGPRMSIEAEARRMRYQAIEQHVGSDD--LLLT 124

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQLET+ +  +R    KG+   G    ++  + +   RP L   RE I ++    
Sbjct: 125 AHHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQV---RPLLDVSREHIEAYASAN 181

Query: 185 NISWCEDPSNTDDRFERVRVR 205
            +   ED SN DD+++R  +R
Sbjct: 182 GLVHIEDESNQDDKYDRNFLR 202


>gi|253687355|ref|YP_003016545.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753933|gb|ACT12009.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 425

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A SGG DS    + LH +++ R    +   A  + H L   A     +    C R +
Sbjct: 10  ILLAYSGGLDSS---VLLHLLVAVRQRSGLAIRAAYIHHGLNPLADSWAEHCRQQCERWQ 66

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           ++ + +         G+ AAAR ARY  +  H +      ++TA   DDQ ET  +  +R
Sbjct: 67  VSFASLPVMVEAQNGGIEAAARTARYQALQAHQQ--EGETLLTAQHLDDQSETFLLALKR 124

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+       T+       + RP L   R  + ++  +  + W ED SN D+RF+R
Sbjct: 125 GSGPAGLSAMAAQSTLGQHR---LIRPLLGFSRLQLEAYAQRHQLRWIEDDSNQDERFDR 181

Query: 202 VRVRRFV 208
             +RR +
Sbjct: 182 NFLRRQI 188


>gi|320353156|ref|YP_004194495.1| tRNA(Ile)-lysidine synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320121658|gb|ADW17204.1| tRNA(Ile)-lysidine synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 345

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 91/202 (45%), Gaps = 41/202 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS--VDH------------CLRETAK 67
           ILV VSGG+DS+         L     G+I  + I+  VDH            C++E A 
Sbjct: 25  ILVGVSGGADSL-----ALLHLLAALRGEISLTLIAAYVDHGLRPKETPAEWACVQEAAA 79

Query: 68  ----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
               + VR V+DV  R            ++ +  L  AAREARY  +    +   A L+ 
Sbjct: 80  VLGINSVRAVADVHGR-----------AARQKLSLEHAAREARYQALGALIRQQGANLLA 128

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AHT DDQ E + +R  R    K   LSGM     +     + RP L  R+  + ++L  
Sbjct: 129 VAHTADDQAEEILLRLFRGGGRK--ALSGMRMRAGH-----LIRPLLATRKAMLLAYLRD 181

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
           + I +C D SN D RF R R+R
Sbjct: 182 QGIGYCHDSSNDDRRFLRNRIR 203


>gi|315498689|ref|YP_004087493.1| pp-loop domain protein [Asticcacaulis excentricus CB 48]
 gi|315416701|gb|ADU13342.1| PP-loop domain protein [Asticcacaulis excentricus CB 48]
          Length = 375

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 15/165 (9%)

Query: 49  GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108
           G+      +VDH +   + +  R V  +   L +  +V+ W+  KP++GL AAAR AR+ 
Sbjct: 11  GQRPLEVFTVDHGVNPQSAEWARGVEALGRELGLPLTVLRWEGDKPRSGLQAAARRARHH 70

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-- 166
           LI + A+  +  ++   H  DD  E   MR++        G +     +      W    
Sbjct: 71  LILDAARAKDIRVLCLGHNADDVAEAAAMRAE--------GSTVGAPKLWSPAPFWPQGE 122

Query: 167 -----RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
                RP L   R  +R +L    +S+ +DP+NT+  + R RVR+
Sbjct: 123 GMFYLRPLLGVGRARLRDWLKTVGMSYVDDPANTNPAYLRARVRQ 167


>gi|66044608|ref|YP_234449.1| PP-loop [Pseudomonas syringae pv. syringae B728a]
 gi|63255315|gb|AAY36411.1| PP-loop [Pseudomonas syringae pv. syringae B728a]
          Length = 445

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +  +AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLYLLAELASRETLPAL--NAIHVHHGLQPAADAWPEHCQQVCRTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     +P   L  AAR+ARY+  SE  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVR-LQVEPGASLEQAARQARYSAFSE--RLGEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R  +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPDQRVLGRGR-LVRPLLDMSRMQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|293372701|ref|ZP_06619083.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f]
 gi|292632510|gb|EFF51106.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f]
          Length = 426

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 138/320 (43%), Gaps = 39/320 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A+SGG+DS+ LL  LH+           F         +E+ +DE+ +V  +C R+ 
Sbjct: 22  ILIALSGGADSVALLYILHTAGYHCEAAHCNFHLRG-----KESDRDEL-FVRQLCERME 75

Query: 82  IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I    + +  ++  T     +  AARE RY    +  K   A ++  AH  DD +ET+ +
Sbjct: 76  IHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKKCQADVVAVAHHQDDSIETILL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+    +   N  I RP L   RE+I  +L      +  D +N +D
Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGAIVRPLLCINREEIIRYLQNIGQDYVTDSTNLED 188

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ 254
            + R ++R       L+ L L     Q++   V N +   +  +    T++ + I    +
Sbjct: 189 EYTRNKIR-------LNLLPL----MQEINPSVKNTLVDTSNYLNDVATIYNKCIEETKK 237

Query: 255 DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSME----RVMLFLKSGKRGCVSIGRVV 308
            I+  +   +  L++  A  AI    +   G+ S +       L  + GK+ C    RV+
Sbjct: 238 KIITAEGIRICDLVKEPAPEAILFEVLHPLGFNSAQIKDIAHSLHSQPGKQFCSKEWRVI 297

Query: 309 IDRRANFLWITRAVRNLPTL 328
            DR   FL I  A     TL
Sbjct: 298 KDRE--FLLIETAESKNETL 315


>gi|302390905|ref|YP_003826725.1| tRNA(Ile)-lysidine synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302202982|gb|ADL11660.1| tRNA(Ile)-lysidine synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 466

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V+VSGG DS+ LL  L  +  D +   +K     +DH  R E ++ +  YV+   ++L
Sbjct: 21  VIVSVSGGPDSLALLHILWRLQDDYN---LKLHVFHLDHMFRGEESQKDAEYVAQFANKL 77

Query: 81  RIAHSVVSWKNSK--PQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I  ++  +       +TGL   AAAR+ RY L +E A ++ A  I      DDQ ETV 
Sbjct: 78  SIPATIEEYDIPAYIEETGLSNQAAARKIRYELCTELADSLKADKIAIGQQADDQAETVL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   R     G GL G+         ++I RP L   R+DI  +  Q  +    D SN  
Sbjct: 138 MNFLR-----GAGLDGLSGIEPIRNGIFI-RPLLEVWRKDIGDYCKQHELEPRIDSSNLK 191

Query: 197 DRFERVRVR 205
             + R +VR
Sbjct: 192 PVYLRNKVR 200


>gi|144227507|gb|AAZ44292.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
          Length = 297

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 20/187 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79
           L+ VSGGSDSM LL             K K   + V H    LR  A  E   VS  C +
Sbjct: 12  LIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 59

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LETV+++ 
Sbjct: 60  YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 119

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDR 198
           ++       G+    +      N+ I RPFL  R ++ I     Q+ I + +D SN   +
Sbjct: 120 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIQICQQKKIPYLDDQSNFTGK 175

Query: 199 FERVRVR 205
           ++R ++R
Sbjct: 176 YQRNQIR 182


>gi|291543862|emb|CBL16971.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Ruminococcus sp. 18P13]
          Length = 448

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 93/201 (46%), Gaps = 19/201 (9%)

Query: 15  SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72
           ++V P   + VA+SGG+DS      L  +L+ R    I   A+ V+H LR    D +  +
Sbjct: 13  AMVQPGDTVTVALSGGADST---ALLLGLLALREQLGISLRAVHVNHHLRGAESDRDAAF 69

Query: 73  VSDVCSRLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            + +C   ++        V ++   +  T    AARE RYA +   A     + I TAHT
Sbjct: 70  CAQLCEERQVPFFLGTCDVATYAAQRKHTSCEMAARELRYAQLE--ALCPPGSKIATAHT 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             D  ETV  R  R     G GL+G+C   +  +   I RP L   R  I  FL Q++ S
Sbjct: 128 ASDNTETVLERLTR-----GTGLAGLCG--IPPVRGRIIRPLLYVTRPQILGFLAQQHQS 180

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           +  D +N  D F R R+R  V
Sbjct: 181 YVTDSTNAQDAFFRNRLRHHV 201


>gi|237723186|ref|ZP_04553667.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447708|gb|EEO53499.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 426

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +L+A+SGG+DS+ LL  LH+           F          E+ +DE+ +V  +C R
Sbjct: 20  AKVLIALSGGADSVALLCILHTAGYHCEAAHCNFHLRG-----EESDRDEL-FVRQLCKR 73

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I    + +  ++     Q  +  AARE RY    +  K   A +I  AH  DD +ET+
Sbjct: 74  TGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQADVIAVAHHQDDSVETI 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G G++G+    +   N  I RP L   RED+  +L      +  D +N 
Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNREDVIHYLESIGQDYVTDSTNL 186

Query: 196 DDRFERVRVR 205
           +D + R ++R
Sbjct: 187 EDEYTRNKIR 196


>gi|295401968|ref|ZP_06811930.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109215|ref|YP_003987531.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1]
 gi|294975970|gb|EFG51586.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214316|gb|ADP72920.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1]
          Length = 462

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V VSGG DS+ LL   H   S R    I   A  VDH  R + +++++ +V   C   
Sbjct: 21  VIVGVSGGPDSLALL---HFFWSIRQKWNITLIAAHVDHMFRGKQSEEDMNFVKHFCQTR 77

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    A   V     + + G+  AAR+ RY    E  +   A  +   H  DDQ+ET+ 
Sbjct: 78  GIICEAAQIDVPAFQRQHKLGVQEAARQCRYRFFGELMEKYKADYLALGHHGDDQVETIL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    KG   +G+     +    +I RPFL   R  I ++  +  I+   D SN  
Sbjct: 138 MRLVRGSTSKGY--AGIPVKRPFH-GGYIIRPFLAISRAHIDAYCEKHQITPRHDASNDK 194

Query: 197 DRFERVRVRRFV 208
           D + R R R  V
Sbjct: 195 DDYTRNRFRHHV 206


>gi|197119017|ref|YP_002139444.1| tRNA(Ile) lysidine-34 synthase [Geobacter bemidjiensis Bem]
 gi|197088377|gb|ACH39648.1| tRNA(Ile) lysidine-34 synthase, putative [Geobacter bemidjiensis
           Bem]
          Length = 457

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 33/206 (16%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD---- 68
           ++L  P   ++VAVSGG+DS+ LL     +++    G ++     ++HCLR    D    
Sbjct: 11  QNLFQPGETVVVAVSGGADSVALL----DIMTRLECG-LRLVVAHLNHCLRGAESDADQA 65

Query: 69  ---------EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
                     + +VS  C    +A         + +  L  A R ARYA + + A+   A
Sbjct: 66  FVASLADNYHLPFVSQSCDVADLAR--------RERLSLEDAGRRARYAFLEQTAEQYGA 117

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I  AH  DDQ ETV +R  R     G GLS M  T    L     RP L+  R  +  
Sbjct: 118 FSIALAHHQDDQAETVLIRLLR--GSGGTGLSAMAGTAGDKLK----RPLLQVSRVKLEQ 171

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
           +L QR +S+  D +N D    R  +R
Sbjct: 172 YLKQRELSYRTDSTNADTAILRNSIR 197


>gi|291557138|emb|CBL34255.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Eubacterium
           siraeum V10Sc8a]
          Length = 306

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 17/191 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++ AVSGG+DS+ LL  L+S+  +  F     +A  V+H LR E +  + R+V  +C  L
Sbjct: 8   VIAAVSGGADSVALLYVLYSLKDELGFS---LAACHVNHNLRGEESDSDERFVRRMCRFL 64

Query: 81  RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            I     S K +   +    L   AR  RY      +K     LI TAHT  D  ET+ +
Sbjct: 65  DIPLYTASIKVNDLRQKHDSLEECARRLRYDFFESISK---GRLIATAHTASDNCETILI 121

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G  LSG+C       N  I RP L   REDI  +  +  + +  D +N  D
Sbjct: 122 NMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDSTNLSD 174

Query: 198 RFERVRVRRFV 208
            + R ++R  V
Sbjct: 175 DYTRNKIRHKV 185


>gi|323491002|ref|ZP_08096196.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2]
 gi|323395358|gb|EGA88210.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2]
          Length = 463

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 88/196 (44%), Gaps = 19/196 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77
           +LV  SGG DSM LL  L+S+ +D     I  +A+ VDH LR    D+ R  ++      
Sbjct: 24  VLVGCSGGIDSMVLLYFLNSIKADLG---ISVAAVHVDHMLRGEESDKDRLFTEKIAKQW 80

Query: 78  -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                SR     +++  +    Q       R  RY    E  K   AT   TAH  DDQL
Sbjct: 81  GIECFSRAIPIPAILEKRGGNKQQ----VCRTERYNYFLEVMKQTGATKFATAHHADDQL 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ M   R   + G    GM  +  +  N  + RP L   +E I ++    NI + ED 
Sbjct: 137 ETILMSGVRGSLQDGS--FGMLASRPFG-NGQLIRPLLAVVKEQISAYAKSLNIPYREDS 193

Query: 193 SNTDDRFERVRVRRFV 208
           SN +  + R R+R+ V
Sbjct: 194 SNAEAAYTRNRLRQNV 209


>gi|226309708|ref|YP_002769602.1| tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC 100599]
 gi|226092656|dbj|BAH41098.1| putative tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC
           100599]
          Length = 475

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 10/198 (5%)

Query: 15  SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
            L+ P   ++V +SGG+DS  LL  L S+     + + K  A+ ++H  R E A+ +  Y
Sbjct: 13  GLLLPGESVVVGISGGNDSTALLHILASLNKQYQY-QWKLHAVHLNHGFRGEEARQDALY 71

Query: 73  VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             ++C  L +   +  +       K   G   A+R+ RY L  E      AT +  AH  
Sbjct: 72  AEELCRELGVVFHLFEYDVPAYMEKTGLGGQEASRDIRYRLYREVGLAQGATKLALAHHA 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           DDQ+ET+  R  R    +  GL+GM    +L D  + + RP L   R+++  +  +  + 
Sbjct: 132 DDQVETILFRFVR--GSRLNGLTGMPKRRMLADCPIELVRPLLHKTRQELEGYCREHQLV 189

Query: 188 WCEDPSNTDDRFERVRVR 205
             ED SN   ++ R  +R
Sbjct: 190 PREDSSNQSRKYTRNLLR 207


>gi|170017773|ref|YP_001728692.1| ATPase [Leuconostoc citreum KM20]
 gi|169804630|gb|ACA83248.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Leuconostoc citreum KM20]
          Length = 435

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 15/185 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R   + A I+VAVSGG DS+ LL AL   L D      K     V++ LR+ +  +  +
Sbjct: 9   LRRYAWEATIIVAVSGGVDSVVLLHALRQYLPD-----TKLVVAHVNYHLRKESDGDALF 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V  + +  + A   + W +  P   +   ARE RY   +  A       I+ AH  +DQ 
Sbjct: 64  VRQLATTYQAAFEQIDW-SIMPSHAVEEQARELRYRFFARLAGQYRTKTIVVAHHANDQA 122

Query: 133 ETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ETV ++  R    E+  G+S     +L        RPFL   ++ + ++  Q ++SW ED
Sbjct: 123 ETVLLKLIRGGRLEQLAGMSVKKRLVL--------RPFLGITKQQLITYAQQHHLSWRED 174

Query: 192 PSNTD 196
            +N D
Sbjct: 175 DTNFD 179


>gi|167032176|ref|YP_001667407.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida GB-1]
 gi|166858664|gb|ABY97071.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida GB-1]
          Length = 427

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 88/192 (45%), Gaps = 22/192 (11%)

Query: 24  VAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +A SGG DS  LL     +L+D  R+       AI V H L+  A     +   +C  L 
Sbjct: 15  IAYSGGLDSTVLL----HLLADYARNHASPPLRAIHVHHGLQTAADAWPAHCQAICDNLG 70

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQ 140
           I   V+  + S P   +  AAR+ARYA   +   T+    ++ T    DDQ ET+  R  
Sbjct: 71  IELQVIHVQVS-PGASVEQAARDARYAAFKQ---TLGPGDILFTGQHRDDQAETLLFRLL 126

Query: 141 RDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R     G GL G+        L   +L  +RP L C R+ ++ +     ++W EDPSNTD
Sbjct: 127 R-----GAGLRGLAAMPGQRALGQGSL--ARPLLGCARQQLQDYASAHRLAWIEDPSNTD 179

Query: 197 DRFERVRVRRFV 208
             F R  +R  V
Sbjct: 180 THFARNYLRGEV 191


>gi|304373319|ref|YP_003856528.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis HUB-1]
 gi|304309510|gb|ADM21990.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis HUB-1]
          Length = 292

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 15/185 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DSM LL    + L +++       A  V++ LR  +  + + V   C + +I
Sbjct: 11  LLAVSGGPDSMFLL----NKLKNKNI-----VAAHVNYHLRADSNVDQQIVEKFCQKHKI 61

Query: 83  AHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              ++S  K  +    +   AR  RY   S+  K  N   ++ AH  DD +ETV+++  +
Sbjct: 62  KLEILSSEKKYEDYQNIQHQARLIRYHFFSQIYKKYNCKQLIIAHQKDDFIETVFLQKMK 121

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                  G+       LY++N  I+R FL +  +E+I + L ++NI +  D SN+ D ++
Sbjct: 122 KKEVNYWGIKK--KNFLYNMN--ITRIFLFKYFKEEIINLLNKKNIHFAIDSSNSKDIYQ 177

Query: 201 RVRVR 205
           R ++R
Sbjct: 178 RNKIR 182


>gi|291530325|emb|CBK95910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Eubacterium
           siraeum 70/3]
          Length = 306

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 88/191 (46%), Gaps = 17/191 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++ AVSGG+DS+ LL  L+S+  +  F     +A  V+H LR E +  + R+V  +C  L
Sbjct: 8   VIAAVSGGADSVALLYVLYSLKDELGFS---LAACHVNHNLRGEESDSDERFVRRMCRFL 64

Query: 81  RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            I     S K +   +    L   AR  RY      +K     LI TAHT  D  ET+ +
Sbjct: 65  DIPLYTASIKVNDLRQKHDSLEECARRLRYEFFESISKD---RLIATAHTASDNCETILI 121

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G  LSG+C       N  I RP L   REDI  +  +  + +  D +N  D
Sbjct: 122 NMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDSTNLSD 174

Query: 198 RFERVRVRRFV 208
            + R ++R  V
Sbjct: 175 DYTRNKIRHKV 185


>gi|116617526|ref|YP_817897.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096373|gb|ABJ61524.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 430

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 15/190 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +   ++   +P  ++VAVSGG DS+ L+ AL       S  K       V++ LRE +
Sbjct: 3   EKILQTIQQYNWPETVIVAVSGGVDSVVLVHAL-------SKTKANLVIAHVNYRLREES 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D+  +V  + ++         W++  P   +  AAR+ RY    E A+  +   I  AH
Sbjct: 56  DDDADFVRQLATQTGAIFEEQVWQHI-PDHAVEKAARQFRYDFFEELAQKYHTNTIAVAH 114

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ETV ++  R    + MG  GM        N  + RPFL   ++++ ++    ++
Sbjct: 115 HADDQAETVLLKMIRGGRLQQMG--GMQTK-----NHKVIRPFLSITKQELITYAQDNHL 167

Query: 187 SWCEDPSNTD 196
            W +D +N D
Sbjct: 168 GWRQDKTNFD 177


>gi|262066540|ref|ZP_06026152.1| tRNA(Ile)-lysidine synthase [Fusobacterium periodonticum ATCC
           33693]
 gi|291379774|gb|EFE87292.1| tRNA(Ile)-lysidine synthase [Fusobacterium periodonticum ATCC
           33693]
          Length = 452

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   + F K K   + ++H LR E A  +  +  D   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---QDFFKFKIYLVHINHLLRGEDADADENFSYDYARKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    +TG  L    RE RY   SE    + A  I TAH  DDQLET  
Sbjct: 80  SLEIFAKRIPVKEIAKETGKTLEEVGREERYNFFSEIYNKVGANKIATAHNKDDQLETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G  L G+    L + N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIR-----GTSLQGLEGIKLKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|85859371|ref|YP_461573.1| tRNA(Ile)-lysidine synthetase [Syntrophus aciditrophicus SB]
 gi|85722462|gb|ABC77405.1| tRNA(Ile)-lysidine synthetase [Syntrophus aciditrophicus SB]
          Length = 476

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 18/193 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----VRYVSD- 75
           H++ AVSGG DS+ LL   H ++S     ++  S   ++H LR +  D     VR +S  
Sbjct: 20  HVIAAVSGGPDSVALL---HVLISLACEYELTLSVAHLNHGLRGSESDAEEQLVRQLSKE 76

Query: 76  ---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               CS  RI    +  K  + +  L    R+ RY   +  A  I A+ I   H  +DQ 
Sbjct: 77  RGISCSVKRIDLQALR-KCDRRKCSLEDIGRQERYEFFTALAAEIGASRIALGHHREDQA 135

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV M   R     G GL G+          +I RP L   R DI  FL   ++ + ED 
Sbjct: 136 ETVLMNFIR-----GSGLEGLKGIRPVRDGCFI-RPLLEVSRRDILDFLQAEHLPFLEDS 189

Query: 193 SNTDDRFERVRVR 205
           SN++D F R R+R
Sbjct: 190 SNSEDHFLRNRIR 202


>gi|330686057|gb|EGG97679.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU121]
          Length = 433

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 21/217 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI++AVS G DSM LL   H +L++      K + I V+H LR+ + +E  +    C   
Sbjct: 14  HIVLAVSTGIDSMCLL---HLLLNEYQHTYSKLTCIHVNHGLRQASIEEEAFFKTYCEEH 70

Query: 81  RIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +I + +     S+       +   +R+ RY       K + A +++TAH  DDQ+ET++ 
Sbjct: 71  QIEYFIKRLDLSETVEAGNSIQNVSRQYRYDWFDSIMKQLGANVLLTAHHQDDQIETIFY 130

Query: 138 R--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           R  + R +    +G++       Y L     RP L   +  I+S+  Q NI + ED SN 
Sbjct: 131 RLFTGR-FTRSHLGIAYTSQRSSYQL----IRPMLDISKAAIKSYQNQYNIPFFEDVSNH 185

Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQD 225
            + + R  +R  +       + +D+ A  LK+K + D
Sbjct: 186 KNVYVRNDIRNRIIPAVMDNQQLDV-AHLLKLKSWHD 221


>gi|262380273|ref|ZP_06073428.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164]
 gi|262298467|gb|EEY86381.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164]
          Length = 454

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 17/185 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DSM LL  + ++      G+I+  AI VDH L+  ++D   +V   C +L +
Sbjct: 34  LIGCSGGMDSMLLLYFMAALCP----GRIR--AIYVDHQLQAQSRDWGIHVQAECMKLDV 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V     +     L   AREARY    +H K+    +++ AH   DQ ETV +R    
Sbjct: 88  PCIVQPVHVNA--GNLERQAREARYQAYHQHIKS--GEVLVLAHHQQDQAETVLLR---- 139

Query: 143 YAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               G G+SG+      D    + I RP L   RE I  +  Q NIS+ +DPSN +  ++
Sbjct: 140 -LFSGTGISGLSAMKQLDQRHEMPIWRPMLSLSREQICQWAEQLNISFIDDPSNNNTHYD 198

Query: 201 RVRVR 205
           R   R
Sbjct: 199 RAWCR 203


>gi|54020383|ref|YP_115689.1| hypothetical protein mhp176 [Mycoplasma hyopneumoniae 232]
 gi|61216451|sp|Q601M6|TILS_MYCH2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|53987556|gb|AAV27757.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 297

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 22/188 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79
           L+ VSGGSDSM LL             K K   + V H    LR  A  E   VS  C +
Sbjct: 12  LIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 59

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LETV+++ 
Sbjct: 60  YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 119

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++       G+    +      N+ I RPFL  R +++ IR    Q+ I + +D SN   
Sbjct: 120 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIR-ICQQKKIPYLDDQSNFTG 174

Query: 198 RFERVRVR 205
           +++R ++R
Sbjct: 175 KYQRNQIR 182


>gi|333031348|ref|ZP_08459409.1| tRNA(Ile)-lysidine synthase [Bacteroides coprosuis DSM 18011]
 gi|332741945|gb|EGJ72427.1| tRNA(Ile)-lysidine synthase [Bacteroides coprosuis DSM 18011]
          Length = 431

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 89/192 (46%), Gaps = 25/192 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDVC 77
           I+V +SGG+DS+ LLI L           + +S I+  HC   LR E A  +  +V  +C
Sbjct: 22  IIVGLSGGADSVALLILLKD---------LGYSCIAA-HCNFHLRGEEADRDEDFVVQLC 71

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +L I      +   K     +  +  AARE RY       K  NAT +  AH  DD +E
Sbjct: 72  KKLDIKLRSTHFDTYKYAADHKLSIEMAARELRYNWFERLCKEENATKVAIAHHRDDNVE 131

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G GL G+  T +   N  I RP L   R++I  FL  R   +  D +
Sbjct: 132 TLLLNLIR-----GAGLKGL--TGIQPKNGNIVRPLLTISRKEIVFFLQSRQQDFVTDST 184

Query: 194 NTDDRFERVRVR 205
           N +D F R +VR
Sbjct: 185 NLEDEFARNKVR 196


>gi|167624879|ref|YP_001675173.1| tRNA(Ile)-lysidine synthetase [Shewanella halifaxensis HAW-EB4]
 gi|167354901|gb|ABZ77514.1| tRNA(Ile)-lysidine synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 476

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 6/113 (5%)

Query: 94  PQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
           P+  + A AR  RY AL+SE +   N  ++MTAH  DDQLETV +  +R    KG  LS 
Sbjct: 113 PRLSVEAQARSVRYEALLSELS---NNDILMTAHHQDDQLETVLLALKRGLGPKG--LSA 167

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           M     ++   WI RP L C +++I ++  +  I+  +D SN DD+++R  +R
Sbjct: 168 MGKVQRFNQQHWIIRPLLDCSKDEIEAYAKRYEITHIQDESNFDDKYDRNFLR 220


>gi|260596609|ref|YP_003209180.1| tRNA(Ile)-lysidine synthase [Cronobacter turicensis z3032]
 gi|260215786|emb|CBA28217.1| tRNA(Ile)-lysidine synthase [Cronobacter turicensis z3032]
          Length = 444

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +LVA SGG DS    + LH ++  R +  +++  AI V H +   A     +   +C R
Sbjct: 24  QLLVAYSGGLDST---VLLHQLVRLRETHPELRLRAIHVHHGISPNADRWAAHCQAICHR 80

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   +   + ++   GL A AR+ARY      A  +    ++TA   DDQ ET+ +  
Sbjct: 81  WQVPFELAYVELAQDGLGLEAQARKARYQAFE--AALLPGEALVTAQHLDDQCETLLLAL 138

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G  L+ M   + +  +  I RP L   R  + ++  +  + W +D SN DDRF
Sbjct: 139 KRGSGPAG--LAAMPAELPFAGSA-ILRPLLNTSRAQLEAWADRHQLLWIDDESNQDDRF 195

Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223
           +    R F+R   L AL  +   F
Sbjct: 196 D----RNFLRLRILPALQARWPHF 215


>gi|262404577|ref|ZP_06081132.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC586]
 gi|262349609|gb|EEY98747.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC586]
          Length = 440

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 22/251 (8%)

Query: 12  FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65
           FV+ L  YP   LV A+SGG DS  LL  L       + G+ +F     A+ V H L   
Sbjct: 8   FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   V+     C    I+  +   + +      +   AREARY  +S++  +   TL++ 
Sbjct: 61  ADQWVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQYVDS--DTLLLL 118

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
               DDQLET  +  +R    KG  LS M     +     ++RP L   R+DI ++ +Q+
Sbjct: 119 GQHADDQLETFLLALKRGSGPKG--LSAMAAYTPFAQGH-LARPLLTVSRQDIEAYAMQK 175

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            +SW  D SN D R+ER  +R  +  I L   +L +++      ++     +L+ + L  
Sbjct: 176 KLSWVTDESNFDTRYERNFLRHHITPI-LTERWLSIRQAVQRSAELCAEQEVLLQELLAD 234

Query: 245 HMRSIIAISQD 255
            ++   AI+QD
Sbjct: 235 ALKR--AITQD 243


>gi|309790448|ref|ZP_07685009.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6]
 gi|308227496|gb|EFO81163.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6]
          Length = 487

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 22/220 (10%)

Query: 6   IESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I  VR F+++  L  P   ++VAVSGG DS+ LL   H ++  ++ G        +DH  
Sbjct: 6   INRVRAFLQAQQLFTPNRRVVVAVSGGPDSLCLL---HVLVQLQAQGGPLLHVAHLDHGF 62

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTI 117
           R   +  E   V+ +C+   +  S+          + + G MAAAR+ARYA +++  +  
Sbjct: 63  RGPQSAAEADEVAQICAAWGVPISIGRVDGPALARRLRRGKMAAARQARYAFLTDLVQQQ 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWIS--------RP 168
            A  +  AHT DDQ ETV + + R       GL GM + +  ++  +  S        RP
Sbjct: 123 QAHALAVAHTADDQAETVLLHALRGAGPA--GLRGMRERVAAHEWQIEASVVHAADLVRP 180

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            L   R +I ++     +   +DPSN    + R RVR  +
Sbjct: 181 LLSTTRAEILAYCAAYQLQPADDPSNRALHYARSRVRHQI 220


>gi|258621013|ref|ZP_05716047.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM573]
 gi|258586401|gb|EEW11116.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM573]
          Length = 440

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 19/204 (9%)

Query: 12  FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65
           FV+ L  YP   LV A+SGG DS  LL  L       + G+ +F     A+ V H L   
Sbjct: 8   FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A    +     C    I+  +   + +      +   AREARY  +S+H  +   TL++ 
Sbjct: 61  ADQWAQDCQTWCQAANISCQIEHVQLAVGSGESIEKMAREARYQALSQHVGS--DTLLLL 118

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
               DDQLET  +  +R    KG  LS M     +     ++RP L   R+DI ++ +Q+
Sbjct: 119 GQHADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQGH-LARPLLTVSRQDIEAYAMQK 175

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
            +SW  D SN D R+ER  +R  +
Sbjct: 176 KLSWVTDESNFDIRYERNFLRHHI 199


>gi|332830557|gb|EGK03178.1| hypothetical protein HMPREF9455_00748 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 438

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V VSGG+DS+ LL  LH      SFG     A    H   E +  +  +V ++C +  
Sbjct: 22  IIVGVSGGADSIALLDILH------SFGLECVVAHCNFHLRGEESNRDAFFVEELCKKYN 75

Query: 82  IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + +  + +            +  AARE RY    +      A  I  AH  DD +ET+ +
Sbjct: 76  LKYERIDFDTEAYAAINSVSIEMAARELRYNWFEQLRVIHMADKIAVAHHRDDSVETILL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G+ G+  T +  +N ++ RP L   R++I  +L +R +S+ +D +N +D
Sbjct: 136 NLVR-----GTGIRGL--TGIAPVNGYVIRPLLCVSRDEIIEYLKERRMSFVDDSTNNED 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 MYARNKIR 196


>gi|89068037|ref|ZP_01155454.1| Probable cell cycle protein [Oceanicola granulosus HTCC2516]
 gi|89046276|gb|EAR52333.1| Probable cell cycle protein [Oceanicola granulosus HTCC2516]
          Length = 377

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 46  RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA 105
           R FG I+ + ++VDH LR  A DE   V+     L + H V+ W +   Q  L  AAR A
Sbjct: 12  RVFG-IRLAVVTVDHGLRPEAADEAALVAAEAELLGLPHDVLRW-HWDGQGNLQDAARRA 69

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW- 164
           R  LI +    I    +  AHT DDQ ET+ +R +R    +G  LSGM +    D+  W 
Sbjct: 70  RARLIGDWRGEI--AHVAFAHTRDDQAETLLLRLRRGSGVEG--LSGMAER--RDMGGWQ 123

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           I RP L   R+++R +     I + +DPSN D  ++RVR+RR + D++
Sbjct: 124 IVRPLLDAGRDELRHYCRVLRIPYADDPSNADPTYDRVRIRRLLSDLE 171


>gi|329666677|gb|AEB92625.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii DPC 6026]
          Length = 431

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            L+A SGG DS+ LL  L + L + S   I      +DHCLR+ +  E + +  + S L+
Sbjct: 20  FLLAASGGPDSVALLKMLVNFLPNPSEQLI---VAHLDHCLRDDSFLESQLLQRLTSALK 76

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +      W     PQ G+ A ARE RYA +++  +      ++TAH  DD +E + ++  
Sbjct: 77  VKLVEKKWPVELHPQAGVEAKAREYRYAFLAKVGREYQTDYLLTAHHGDDLIENILLKFI 136

Query: 141 R--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  D AE   + + G   +      + + RP ++  ++++  +    ++ + ED +N +D
Sbjct: 137 RSGDVAEMNSLQIVGNLGS------MKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNFED 190

Query: 198 RFERVRVRRFV 208
              R R+R  V
Sbjct: 191 DTLRNRLRHHV 201


>gi|315640556|ref|ZP_07895664.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus italicus DSM 15952]
 gi|315483760|gb|EFU74248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus italicus DSM 15952]
          Length = 457

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 96/187 (51%), Gaps = 9/187 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVS G DSM LL  L S ++D      + + + V+H LR  ++ E  +++  C   +
Sbjct: 20  VLLAVSTGVDSMVLLDLLISSVTDIQ----RIAVVHVNHGLRPESEKEACFINAYCKEHQ 75

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +     +W  +   + + A AR+ RY    +        +++TAH  DDQLET+ M++ R
Sbjct: 76  LDFFQANW--TPTSSNIEANARQFRYDFFKKIMNEQGYKVLLTAHHRDDQLETMLMKAIR 133

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           D   +   L G+  +  +  N  + RP L   ++ +  +  +R +++ ED +N D  + R
Sbjct: 134 D--GQLTALKGIVASQPF-ANGQLVRPLLPYDKQTLYDYAKRRELTYFEDETNQDSLYFR 190

Query: 202 VRVRRFV 208
            R+R+ V
Sbjct: 191 NRMRQQV 197


>gi|289663217|ref|ZP_06484798.1| cell cycle protein [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 469

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 135/339 (39%), Gaps = 37/339 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS    + LH + +   + +    A+ V H L   A     +    C  L+
Sbjct: 52  VLLAYSGGMDSN---VLLHLLAATPRYRQAGLRALHVHHGLHTDADAWAAHCQRSCDALQ 108

Query: 82  IAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +V     +    GL AAAR AR+   + HA      L + AH  DDQ ET  +R+ 
Sbjct: 109 VPLQIVQVHVERDSGLGLEAAARNARHTAFA-HALAAGEWLAL-AHHRDDQAETFLLRAL 166

Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R  A    GL+ M       +  LW  RP L   R D+ ++ L + + W EDPSN D R 
Sbjct: 167 R--ASGPEGLAAMRPQRPFANGTLW--RPLLAHARADLLAYALAQGLRWIEDPSNADPRH 222

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
           +    R F+R   L  L  +  +  D   +     A L      + ++  +A+   +   
Sbjct: 223 D----RNFLRSQVLPLLQQRWPQAADALAR----SAQLSADASALLLQQDMALLPSVRTA 274

Query: 260 DSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
              L  + LR               +A     +   G  ++ER +    + ++ C +  +
Sbjct: 275 SGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDHYAADRQACFAWQQ 334

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
           + I R    L++ R     P  +   +    WDG    Q
Sbjct: 335 MEIRRWRQCLFLHR-----PAAVWPSDWQASWDGAVPLQ 368


>gi|42518368|ref|NP_964298.1| hypothetical protein LJ0281 [Lactobacillus johnsonii NCC 533]
 gi|61216579|sp|Q74LA3|TILS_LACJO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|41582653|gb|AAS08264.1| hypothetical protein LJ_0281 [Lactobacillus johnsonii NCC 533]
          Length = 431

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            L+A SGG DS+ LL  L + L + S   I      +DHCLR+ +  E + +  + S L+
Sbjct: 20  FLLAASGGPDSVALLKMLVNFLPNPSEQLI---VAHLDHCLRDDSFLESQLLQRLTSALK 76

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +      W     PQ G+ A ARE RYA +++  +      ++TAH  DD +E + ++  
Sbjct: 77  VKLVEKKWPVELHPQAGVEAKAREYRYAFLAKVGRKYQTDYLLTAHHGDDLIENILLKFI 136

Query: 141 R--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  D AE   + + G   +      + + RP ++  ++++  +    ++ + ED +N +D
Sbjct: 137 RSGDVAEMNSLQIVGNLGS------MKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNFED 190

Query: 198 RFERVRVRRFV 208
              R R+R  V
Sbjct: 191 DTLRNRLRHHV 201


>gi|91775602|ref|YP_545358.1| tRNA(Ile)-lysidine synthetase-like protein [Methylobacillus
           flagellatus KT]
 gi|91709589|gb|ABE49517.1| tRNA(Ile)-lysidine synthetase-like protein [Methylobacillus
           flagellatus KT]
          Length = 425

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 13/188 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS  LL  L           +   A+ V H L   A     + +  C  L 
Sbjct: 1   MLIAFSGGLDSRVLLQLLAQCSQQHG---VLLEAMHVHHGLSPNADRWAAFCAAECQGLG 57

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           IA H      ++    G+ A AR ARY  +  H    +A  ++ AH  DDQ ET+ ++  
Sbjct: 58  IAFHCQRICVDTSSGLGIEAGARLARYTALLSH----DADYVLLAHHQDDQAETLLLQLL 113

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G G  G+    ++D +  + RP +   R++I+++     + W +D SN D R++
Sbjct: 114 R-----GAGAKGLAAMAIHDPSRRLLRPLIDVSRDEIQAYAKHAGLQWVDDESNLDTRYD 168

Query: 201 RVRVRRFV 208
           R  +R  V
Sbjct: 169 RNFLRHMV 176


>gi|304396663|ref|ZP_07378544.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. aB]
 gi|304356172|gb|EFM20538.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. aB]
          Length = 439

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 117/278 (42%), Gaps = 19/278 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A ++VA SGG DS  LL  L           ++  A+ V H L   A     +   VC +
Sbjct: 14  AALVVAFSGGLDSTVLLHQLRGWQQQHPESHLR--ALHVHHGLSPNADCWAAHCLSVCEQ 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V+       + G+ AAAR ARY  +S  A  +   +++TA   DDQ ET  +  
Sbjct: 72  WQLPCEVLHVTVDGRENGIEAAARTARYQALS--AALLPGEVLLTAQHLDDQCETFMLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+        +     L   RP L   R+ + ++     + W ED SN D R+
Sbjct: 130 KRGSGPAGLAAMPAARALGSHQLL---RPLLNQSRQSLETYARTHQLVWIEDESNQDLRY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +    R F+R   L ALY +   F +   +   + +    L+ + LT  +  +I      
Sbjct: 187 D----RNFLRQRLLPALYQRWPHFAEATARSAALCSEQEQLLDELLTGQLNELIQ-PDGS 241

Query: 257 LNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERV 290
           L+    ++   LR +A     I G    +P   +++R+
Sbjct: 242 LHFPPLMVMSELRANALLRRWIAGQGGRMPSREALKRI 279


>gi|311112392|ref|YP_003983614.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931]
 gi|310943886|gb|ADP40180.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931]
          Length = 398

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 11/190 (5%)

Query: 22  ILVAVSGGSDSMGL-LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +LVA SGG DS+ L  IA H   + RS   ++  A+ VDH L+  + +     ++  + L
Sbjct: 57  VLVACSGGPDSLALACIAAH--FARRS--DVRVGAVVVDHGLQADSAEVAASTAETLTNL 112

Query: 81  RIAHSVVSWKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            + + V +     PQ   G   AAR ARY+          A  ++  HT DDQ ETV + 
Sbjct: 113 GL-YPVRTECVQVPQGSMGPEMAARTARYSAFECAVHNTGARAVLLGHTLDDQAETVLLG 171

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   L+GM    + +   ++ RPFL  RR D+ +       +   DP+NTD  
Sbjct: 172 LGRGSGTRS--LAGMPPARIENGVTYL-RPFLALRRADMLNICEAEGATPWNDPTNTDQT 228

Query: 199 FERVRVRRFV 208
             R R+R  +
Sbjct: 229 LMRARIRHTI 238


>gi|254508666|ref|ZP_05120781.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16]
 gi|219548423|gb|EED25433.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16]
          Length = 434

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 8/187 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A SGG DS  LL  L     +     +   A+ V H L   A +      +  ++  
Sbjct: 21  IVLAFSGGIDSRVLLSLLARYQQETHRPTL---AVHVHHGLSVNADEWANQCQEWAAQSD 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +   +       +   AR+ RY ++++H    +  +++T    DDQLET  +  +R
Sbjct: 78  VPFILEKVQLDASGKSIEECARDQRYKVLAQHVNEKD--ILLTGQHGDDQLETFLLALKR 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG  LS M ++  +  N  + RP L+ RRE+I  +     ++W ED SN D RF+R
Sbjct: 136 GSGPKG--LSAMAESKPFS-NGRLVRPLLKVRREEIEQYAQHHGLNWVEDESNQDTRFDR 192

Query: 202 VRVRRFV 208
             +RR +
Sbjct: 193 NYIRRHI 199


>gi|120436499|ref|YP_862185.1| PP-loop family protein [Gramella forsetii KT0803]
 gi|117578649|emb|CAL67118.1| PP-loop family protein [Gramella forsetii KT0803]
          Length = 437

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 19/192 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78
           + +L+AVSGG DS   ++  H  LS     K+ F+    +  LR + + D+ ++V D+  
Sbjct: 19  SKLLLAVSGGVDS---VVLAHLCLS----AKLDFTIAHCNFNLRGDESDDDEKFVVDLAD 71

Query: 79  RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L +     S+   K     +  +  AARE RY   +E + ++     +TAH  +D LET
Sbjct: 72  FLEVEVYTESFNTLKFAENNKISVQMAARELRYEWFAELSNSVQFDYTLTAHHANDNLET 131

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R     G G  G+  T +      I RP L   R +I  F  ++N+ W ED SN
Sbjct: 132 FLINLIR-----GTGPEGL--TGIKKEKNEIVRPLLPFTRSEIEDFARKKNLKWREDSSN 184

Query: 195 TDDRFERVRVRR 206
             D++ R ++R 
Sbjct: 185 ASDKYMRNKIRH 196


>gi|150865036|ref|XP_001384086.2| hypothetical protein PICST_31371 [Scheffersomyces stipitis CBS
           6054]
 gi|149386292|gb|ABN66057.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 484

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 11/189 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ +LVA+SGG DS+ L   L           I  +AI++DH  R  + +E + V  +  
Sbjct: 23  PSRVLVALSGGVDSICLTYLLSQYSRLYCNNAIAINAITIDHGYRSGSNEEAKAVGKLVE 82

Query: 79  RLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +  + H V   +  K  T        AR  RY    E     +A+ +  AH  +DQLET 
Sbjct: 83  KWGVQHIVKKLEYEKLPTEYSNFEEIARMKRYEKFEETCHQSDASHLFVAHNLNDQLETF 142

Query: 136 YMRSQRDYAEKGM-GLSGMCDTILYDL-------NLWISRPFLRCRREDIRSFLLQRNIS 187
             R Q + +  G+ GL       +           + + RP L   + +I     Q+NIS
Sbjct: 143 IQRLQGNSSIYGLAGLKAQTSLPVQSQLPSAEKERISVIRPLLSFEKSEIIDTCKQQNIS 202

Query: 188 WCEDPSNTD 196
           W ED +N D
Sbjct: 203 WFEDSTNMD 211


>gi|295101533|emb|CBK99078.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 488

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 98/210 (46%), Gaps = 23/210 (10%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +++VR F    + L    H+ +AVSGG+DSM LL  +  +  ++    I  +   V+H L
Sbjct: 7   LQTVRGFCAREKLLDGKQHLALAVSGGADSMALLCLIRPLAGEKG---IALTVCHVNHGL 63

Query: 63  R-ETAKDEVRYVSDVCSR----LRIAHSV-VSWKNSKPQTGLMAAAREARYALISE-HAK 115
           R ETA  +  +V +VC+R    LR+ H+  +  +  KP+ G    AR  RYA      A+
Sbjct: 64  RGETADRDEAFVREVCARLGLPLRVFHAAELEAEAGKPRAG-EDWARRLRYACFERVLAE 122

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            I+A  + TAHT  DQ ET+  R  R     G GL G     +        RP L   R 
Sbjct: 123 GIDA--VATAHTGSDQAETLLFRLAR-----GTGLHGAAG--IRPSRPGYLRPLLCLTRA 173

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           D  +        W  D +N  D + R R+R
Sbjct: 174 DTEAVCRACGEGWVTDETNDADDYARNRLR 203


>gi|144575318|gb|AAZ53579.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
          Length = 297

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 22/188 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79
           L+ VSGGSDSM LL             K K   + V H    LR  A  E   VS  C +
Sbjct: 12  LIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 59

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LETV+++ 
Sbjct: 60  YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 119

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++       G+    +      N+ I RPFL  R +++ IR    Q+ I + +D SN   
Sbjct: 120 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIR-ICQQKRIPYLDDQSNFTG 174

Query: 198 RFERVRVR 205
           +++R ++R
Sbjct: 175 KYQRNQIR 182


>gi|332883365|gb|EGK03648.1| hypothetical protein HMPREF9456_01715 [Dysgonomonas mossii DSM
           22836]
          Length = 441

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 27/195 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSD 75
           + ++V VSGG+DS+ LL  LHS         +K+  + V HC   LR E +  +  +V +
Sbjct: 20  SKVIVGVSGGADSVALLDILHS---------LKYKCV-VAHCNFHLRGEESNRDAFFVEE 69

Query: 76  VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDD 130
           +C +  + +  V +            +  AARE RY    E  +TI+ A  I  AH  DD
Sbjct: 70  LCQKYNLKYERVDFDTEAYAEIHSISIEMAARELRYNWF-EQIRTIHLADKIAVAHHRDD 128

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+ +   R     G G+ G+      + N  I RP L   R+DI  +L  R + + +
Sbjct: 129 SVETILLNLIR-----GTGIRGLTGIAAQNNN--IIRPLLCLSRKDILEYLKDRGLKYVD 181

Query: 191 DPSNTDDRFERVRVR 205
           D +N +D + R ++R
Sbjct: 182 DSTNNEDLYTRNKIR 196


>gi|293610423|ref|ZP_06692724.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827655|gb|EFF86019.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 466

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 21/188 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DSM LL  +  +         K   I +DH L+  + +    V+   +RL I
Sbjct: 34  LIGCSGGMDSMLLLHLMSQIFPH------KIRIIYIDHQLQSKSAEWGELVAKQATRLNI 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            +++   K       L A AR+ARY    +H +  N  L++ AH   DQ ETV +R    
Sbjct: 88  PYTIQ--KVQVTDGNLEAQARQARYYAYLQHLQA-NEILVL-AHHQQDQAETVILR---- 139

Query: 143 YAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
               G G+ G+    C     D+ +W  RPFL   RE I  +  Q  I + +DP+N D  
Sbjct: 140 -LLSGAGVDGLAAMQCIDHRVDMTIW--RPFLDLTREQIAEWTTQLEIEYVDDPTNYDIH 196

Query: 199 FERVRVRR 206
           ++R   R 
Sbjct: 197 YDRAWSRE 204


>gi|71893557|ref|YP_279003.1| hypothetical protein MHJ_0201 [Mycoplasma hyopneumoniae J]
          Length = 286

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 20/187 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79
           ++ VSGGSDSM LL             K K   + V H    LR  A  E   VS  C +
Sbjct: 1   MIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 48

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LETV+++ 
Sbjct: 49  YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 108

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDR 198
           ++       G+    +      N+ I RPFL  R ++ I     Q+ I + +D SN   +
Sbjct: 109 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIQICQQKKIPYLDDQSNFTGK 164

Query: 199 FERVRVR 205
           ++R ++R
Sbjct: 165 YQRNQIR 171


>gi|330968943|gb|EGH69009.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 307

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +  +AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLYLLAELASRETLPAL--NAIHVHHGLQPAADAWPEHCQQVCRTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   L  AAR+ARY+  SE  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRLQ-VEPGPSLEQAARQARYSAFSE--RLGEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R  +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPDQRVLGRGR-LVRPLLDMSRMQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|166711443|ref|ZP_02242650.1| cell cycle protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 434

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 136/343 (39%), Gaps = 39/343 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    C 
Sbjct: 14  PGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRSCD 70

Query: 79  RLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT-AHTFDDQLETVY 136
            L++   +V  +  +    GL AAAR AR+      A T+ A   +T AH  DDQ ET  
Sbjct: 71  ALQVPLQIVRVQVERDSGLGLEAAARNARHIAF---AHTLAAGEWLTLAHHRDDQAETFL 127

Query: 137 MRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +R+ R  A    GL+ M       +  LW  RP L   R D+ ++ L + + W EDPSN 
Sbjct: 128 LRALR--ASGPEGLAAMRPQRPFANGTLW--RPLLAHSRADLLAYALAQKLRWIEDPSNA 183

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D   +    R F+R   L  L  +  +  D   +     A L      + ++  +A+   
Sbjct: 184 DPHHD----RNFLRSQVLPLLQQRWPQAADALAR----SAQLSADASALLLQQDMALLPS 235

Query: 256 ILNIDSTLLFYLLRVS-------------AAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
           +      L  + LR               +A     +   G  ++ER +    + ++ C 
Sbjct: 236 VRTASGALDLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACF 295

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
           +  +V + R    L++ R     PT     +    WDG    Q
Sbjct: 296 AWQQVEVRRWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQ 333


>gi|91201108|emb|CAJ74167.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 482

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 6/189 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V VSGG DS+ LL  LH + + ++  +++     ++H LR + ++++ ++V D+ ++L
Sbjct: 26  VIVGVSGGPDSVALLKTLHFLNAAKNL-RLRLYVAHLNHQLRGDFSEEDEQFVQDLANKL 84

Query: 81  R---IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               I+  V   K  S+ +  L   AR+ RY   SE ++  N + + T H  DD  ET+ 
Sbjct: 85  SLPFISKRVNIGKIASETKLSLEEMARKERYTFYSEASQNYNVSHVATGHNADDNAETIL 144

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G+G   +   +       I RP L   +++I  +L +    +  D SN +
Sbjct: 145 HRIIRGTGAPGLGGIPIKRLLSPGTPQLIIRPLLFAWKKEILEYLNKDKTKYRVDASNYE 204

Query: 197 DRFERVRVR 205
             + R R+R
Sbjct: 205 KEYTRNRIR 213


>gi|28374025|pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli
          Length = 433

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 8   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTH 64

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 65  CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 122

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R       GLS   +   +     I RP L   R ++  +  Q ++ W ED 
Sbjct: 123 ETFLLALKRGSGP--AGLSAXAEVSEFAGTRLI-RPLLARTRGELVQWARQYDLRWIEDE 179

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 180 SNQDDSYDR 188


>gi|123969392|ref|YP_001010250.1| ATPase [Prochlorococcus marinus str. AS9601]
 gi|123199502|gb|ABM71143.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. AS9601]
          Length = 336

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 20/199 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSDV 76
           ++IL++VSGG DSM LL  ++ +       K+   +ISV   DH   E +      + D 
Sbjct: 33  SNILISVSGGQDSMALLTLINDL------KKLHNWSISVWHGDHQWHEKSSLYALELKDY 86

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTFD 129
           C    I+ S    + +K        ARE RY  + E AKT+ +T        ++T HT  
Sbjct: 87  CEDKNISFSFD--QANKEDISSEEKAREWRYKKLCERAKTLLSTNQEKHNIYLLTGHTSS 144

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  ET  +   R       GLS +    L +  +++ RP L   RED + F  +  I   
Sbjct: 145 DNAETFILNLSR--GSNFAGLSNIESKRLIENQIYLIRPILIFSREDTKQFCNEMKIPVW 202

Query: 190 EDPSNTDDRFERVRVRRFV 208
           EDP+N+D + +R  VR+ +
Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221


>gi|302672259|ref|YP_003832219.1| tRNA(Ile)-lysidine synthetase TilS [Butyrivibrio proteoclasticus
           B316]
 gi|302396732|gb|ADL35637.1| tRNA(Ile)-lysidine synthetase TilS [Butyrivibrio proteoclasticus
           B316]
          Length = 475

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 35/223 (15%)

Query: 12  FVR--SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           F+R  +++ P   +L   SGG+DS  L++ L S+        IK  A+ V+H +RE A +
Sbjct: 11  FIRANNMIDPGSTVLAGFSGGADSTALMLTLCSL---SKVLNIKLVAVHVNHGIREEAIE 67

Query: 69  EVRYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINA 119
           +  +V + C    I   V           WK ++ + G     R ARY   +E AK    
Sbjct: 68  DETFVKNFCEEHDIECVVYKKDIPKLSKKWKMTEEEAG-----RRARYEAFTETAKKHGT 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           ++I  AH  +D  ET+ M   R     G GL G     +  +   I RPFL   R +I  
Sbjct: 123 SIIAVAHHQNDVAETLLMNLIR-----GSGLHGA--GAIRPVRGNIIRPFLCVDRAEIEK 175

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           +L  +   +C D +N     E +  R  +R+I    L  KM+K
Sbjct: 176 YLKGKRQLFCHDKTND----ENIHTRNIIRNI----LIPKMEK 210


>gi|260905550|ref|ZP_05913872.1| tRNA(Ile)-lysidine synthetase [Brevibacterium linens BL2]
          Length = 292

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 12/225 (5%)

Query: 49  GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108
           G+++  A++VDH L+ T+ +  R V  +     +   V S        GL AAAREARY 
Sbjct: 14  GELRARAVTVDHGLQPTSAEVARRVISIAESWGVPAEVSSVNVEAGVDGLEAAAREARYD 73

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +        A  ++TAHT  DQ ETV +   R     G G   +    L      + RP
Sbjct: 74  ALEAARSADGADWVLTAHTRSDQAETVLLGLMR-----GSGTRSLAGMALRTGR--VVRP 126

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQD 225
            L   R    +    +NI    DP N DD F RVR R  +  ++      +   + +  +
Sbjct: 127 LLDVDRASTLASCRAQNIEVWHDPMNVDDSFARVRARSLLESLEADLGQPITANLARTAE 186

Query: 226 L-RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
           L R   +    +  P    V  R+ + +S+ + +++  L   +LR
Sbjct: 187 LCRADADCLDELAEPSAAAVRGRTEVPLSE-VADLEDALASRVLR 230


>gi|124006425|ref|ZP_01691259.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla
           marina ATCC 23134]
 gi|123988082|gb|EAY27753.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla
           marina ATCC 23134]
          Length = 450

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 25/197 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHC---LRETAKDE-VRYVSD 75
           +IL+AVSGG DS+        VL+D  F +IK    +++ HC   LR  A +E   +V  
Sbjct: 20  NILLAVSGGIDSV--------VLTDL-FAQIKSHGQVAIAHCNFQLRGVASEEDEEFVKQ 70

Query: 76  VCSRLRIAHSVV---SWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +     I   V    ++  ++ Q G +   AR  RYA   +         + TAH  +D 
Sbjct: 71  LAQHYGIPCFVTRFDTYTLAQAQKGSIQMIARNLRYAWFEQLRTKEGYHYLATAHHQNDM 130

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ETV +   R     G G++G+    +   +  I RP L   RE+I ++  ++ + WCED
Sbjct: 131 VETVLLNLVR-----GTGIAGLHGIKVKQGH--IIRPMLFASREEIEAYAQEKGLKWCED 183

Query: 192 PSNTDDRFERVRVRRFV 208
            SN D+++ R R+R  V
Sbjct: 184 ASNQDNKYYRNRLRNEV 200


>gi|121611837|ref|YP_999644.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter eiseniae EF01-2]
 gi|121556477|gb|ABM60626.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 308

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 20/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG+DS  LL+A     + R  G+++  A+ V H L+  A    ++ + +C RL+
Sbjct: 10  LAVGLSGGADSSALLLAC----ARRWPGQVQ--ALHVHHGLQAAADGFEQHCAALCQRLQ 63

Query: 82  IAHSVVSWKNS-KPQTGLMAAAREARYALISEHA---KTINA--TLIMTAHTFDDQLETV 135
           +   V   + S  P      AAR+ARY  ++  A   +T +A  ++++  H  DDQ ETV
Sbjct: 64  VPLMVQHLRASPAPGQSPEDAARQARYQALAALAQANQTHDAIKSIVIGQHA-DDQAETV 122

Query: 136 YMRSQRDYAEKGMGLSGMCD-TILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +   R     G G++G+      +++  L   RP L+    D+R +L  +  +W EDPS
Sbjct: 123 LLALLR-----GAGVAGLAAMPARWEMAGLTWHRPLLQVTAADVRQWLRAQGQTWVEDPS 177

Query: 194 NTDDRFERVRVR 205
           N D R  R R+R
Sbjct: 178 NADQRLTRNRIR 189


>gi|120599536|ref|YP_964110.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. W3-18-1]
 gi|120559629|gb|ABM25556.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. W3-18-1]
          Length = 465

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 148/344 (43%), Gaps = 30/344 (8%)

Query: 9   VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           V  F+ SL   A   +++A SGG DS  L   L      +  G++++  + V H L + A
Sbjct: 10  VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQHGELQYQLVYVHHGLSQHA 67

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIMT 124
               ++         +  +++     K  P+  + A AR  RY  I +H  + +  L++T
Sbjct: 68  DAWAQHCITRGQHYGLP-TIIEHVQVKLGPRMSIEAEARRMRYQAIEQHVGSDD--LLLT 124

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQLET+ +  +R    KG+   G    ++  + +   RP L   RE I ++    
Sbjct: 125 AHHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQV---RPLLDVSREHIEAYASAN 181

Query: 185 NISWCEDPSNTDDRFERVRVR-----RFVRDIDLHALYLKMKKF--QDLRVKVNNAVAML 237
            +   ED SN DD+++R  +R     R        A       F   + +  ++  V++ 
Sbjct: 182 GLVHIEDESNQDDKYDRNFLRLDIIPRLKARWSSIATTASRSAFLCAEQQTVIDTEVSLR 241

Query: 238 IPKYLTVHMRSIIAISQDILNIDS----TLLFYLLRVSAAICGGQISLPGYRSMERV--- 290
           +P +LT          Q + N++     T  +  L +   I    ++LP +  + ++   
Sbjct: 242 LPTWLT----QAKFTQQTVFNLNGFDSLTPSWQALLLRGFIESQGVALPSFVQLNQIIHQ 297

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
           +L  K   +  + +G   + R AN L++    +++ +   Y ++
Sbjct: 298 LLNAKDDAKVLIRVGDCALRRFANQLYLEHYSKHVKSSTEYAKK 341


>gi|160878299|ref|YP_001557267.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg]
 gi|160426965|gb|ABX40528.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg]
          Length = 492

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           ++V VSGG+DS+ LL  LH +   R    +   A+ V+H LR    DE   +V  +C+ L
Sbjct: 21  VIVGVSGGADSICLLTCLHRL---REQYHLNLYAVHVNHMLRGMEADEDEAFVQSMCNSL 77

Query: 81  RIA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I  H V   V        T +  A R  RY    +  + + A  I  AH  +D  ETV 
Sbjct: 78  SIPLHCVREDVKRIAELSGTTIEEAGRNLRYLSFEQECERVKAHKIAVAHNRNDNAETVL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                 +  +G GL+GM  T +      I RP L   RE+I +FL   +I +  D +N  
Sbjct: 138 F-----HLFRGTGLTGM--TGIPKKRGQIIRPLLCVTREEIETFLFNEHIFYRIDSTNLS 190

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 191 NDYTRNKIR 199


>gi|251790727|ref|YP_003005448.1| tRNA(Ile)-lysidine synthetase [Dickeya zeae Ech1591]
 gi|247539348|gb|ACT07969.1| tRNA(Ile)-lysidine synthetase [Dickeya zeae Ech1591]
          Length = 442

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 8/194 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H LVA SGG DS    + LH +   R    +   A+ V H L   A     +  
Sbjct: 18  QLATGGHYLVAYSGGLDST---VLLHLMTRLRLPRALSLRAVYVHHGLSVNADAWAEHCR 74

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C    +   VV  +      G+ AAAR ARY ++ +H       +++TA   DDQ ET
Sbjct: 75  TQCLNWLVPFDVVPVQVDARDGGIEAAARAARYKVLHQH--VCEGEVLLTAQHQDDQSET 132

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R     G+       T+     + + RP L   RE +  +     +SW ED SN
Sbjct: 133 FLLALKRGSGPAGLASMAAAATLN---GMVLQRPLLSISREQLEIYARLHQLSWVEDDSN 189

Query: 195 TDDRFERVRVRRFV 208
            D+R++R  +RR V
Sbjct: 190 ADERYDRNFLRRQV 203


>gi|299146811|ref|ZP_07039879.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23]
 gi|298517302|gb|EFI41183.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23]
          Length = 426

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 138/320 (43%), Gaps = 39/320 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA+SGG+DS+ LL  LH+           F         +E+ +DE+ +V  +C R+ 
Sbjct: 22  ILVALSGGADSVALLYILHTAGYHCEAAHCNFHLRG-----KESDRDEL-FVRQLCERME 75

Query: 82  IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I    + +  ++  T     +  AARE RY    +  K   A ++  AH  DD +ET+ +
Sbjct: 76  IHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQADVVAVAHHQDDSIETILL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+    +   N  I RP L   R++I  +L      +  D +N +D
Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGTIVRPLLCINRKEIIRYLQNIGQDYVTDSTNLED 188

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ 254
            + R ++R       L+ L L     Q++   V N +   +  +    T++ + I    +
Sbjct: 189 EYTRNKIR-------LNLLPL----MQEINPSVKNTLIDTSNYLNDVATIYNKCIEETKK 237

Query: 255 DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSME----RVMLFLKSGKRGCVSIGRVV 308
            I+  +   +  L++  A  AI    +   G+ S +       L  + GK+ C    RV+
Sbjct: 238 KIITAEGIRISDLVKEPAPEAILFEVLHPLGFNSAQIKDITHSLHSQPGKQFCSKEWRVI 297

Query: 309 IDRRANFLWITRAVRNLPTL 328
            DR   FL I  A     TL
Sbjct: 298 KDRE--FLLIETAESENETL 315


>gi|330723804|gb|AEC46174.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis MCLD]
          Length = 252

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 15/186 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DSM LL    + L +++       A  V++ LR  +  + + V   C + +I
Sbjct: 11  LLAVSGGPDSMFLL----NKLKNKNI-----VAAHVNYHLRADSNVDQQIVEKFCQKHKI 61

Query: 83  AHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              ++S  K  +    +   AR  RY   S+  K  N   ++ AH  DD +ETV+++  +
Sbjct: 62  KLEILSSEKKYEDYQNIQHQARLIRYHFFSQIYKKYNCKQLIIAHQKDDFIETVFLQKMK 121

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                  G+       LY++N  I+R FL +  +E+I + L ++NI +  D SN+ D ++
Sbjct: 122 KKEVNYWGIKK--KNFLYNMN--ITRIFLFKYFKEEIINLLNKKNIHFAIDSSNSKDIYQ 177

Query: 201 RVRVRR 206
           R ++R 
Sbjct: 178 RNKIRH 183


>gi|301118040|ref|XP_002906748.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108097|gb|EEY66149.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 740

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 96/228 (42%), Gaps = 39/228 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RL 80
           I VAVSGG+DSM L++ L   L      K    A++VDH LR  +  E   V+ +C+ R 
Sbjct: 14  IAVAVSGGADSMALMLLLREYLHGNRI-KTPLLAVTVDHQLRIGSSREALEVAKICAERG 72

Query: 81  RIAH--SVVSW--------KNSKPQTGLM-----------AAAREARYALISEHAKTINA 119
            I H   V  W           + Q+ L+             AR+ RY L+         
Sbjct: 73  GITHVTKVCEWHLGDTEKHSGGEQQSDLLRPVKPRDSKIEEQARQYRYNLLRRVCLEYGV 132

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMG----------LSGMCDTILY------DLNL 163
             +  AH   DQLET   R  R     G+           L G+ D   +      D + 
Sbjct: 133 RCLFVAHNLGDQLETTLFRLGRASGINGLAGIANQLPFLSLEGLPDRSFHGKGLDSDYSA 192

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
            + RP L   ++++ +   +   +W  DPSN D  ++RVR+R+ ++ +
Sbjct: 193 TLLRPLLSVTKDELMATCDRFQQTWIHDPSNDDLMYDRVRIRQELKRV 240


>gi|23466228|ref|NP_696831.1| hypothetical protein BL1680 [Bifidobacterium longum NCC2705]
 gi|61216664|sp|Q8G3S4|TILS_BIFLO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|23326973|gb|AAN25467.1| narrowly conserved hypothetical protein similar to MesJ
           [Bifidobacterium longum NCC2705]
          Length = 388

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 13/179 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +  S G ++  A+ VDH L+  ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQAGSERVASEAADRCRALG 102

Query: 82  IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +    V  +N+  Q    GL AAAR+ARY  +   A    A  ++ AHT DDQ ETV + 
Sbjct: 103 L--GPVIMRNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIG 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R    +G+  L+GM   +        +RP L   R +         + + +DP+N D
Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215


>gi|226226797|ref|YP_002760903.1| tRNA(Ile)-lysidine synthase [Gemmatimonas aurantiaca T-27]
 gi|259533720|sp|C1A873|TILS_GEMAT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226089988|dbj|BAH38433.1| tRNA(Ile)-lysidine synthase [Gemmatimonas aurantiaca T-27]
          Length = 468

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 17/184 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGGSDSM LL A+     DR      F     DH     A D    V+    RL 
Sbjct: 31  LVLAVSGGSDSMALLFAMERWAPDRIAAVATF-----DHGTGSYATDAASLVAAHGRRLG 85

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  +V+  +  +P     AA R+AR++ +   A+  +A  + TAHT DDQ ETV MR  R
Sbjct: 86  L--TVIRERARRPGVN-EAAWRDARWSFLQRVARGFHAR-VATAHTRDDQAETVVMRLLR 141

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+        ++        RP+L   RE++  +L    + + EDP N    F R
Sbjct: 142 GSGARGLAALAAPSPVV--------RPWLGVSREELTRWLASEGLPFLEDPMNASRYFLR 193

Query: 202 VRVR 205
            RVR
Sbjct: 194 ARVR 197


>gi|290894273|ref|ZP_06557240.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
           J2-071]
 gi|290556157|gb|EFD89704.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
           J2-071]
          Length = 648

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 83/188 (44%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A +E   V   C R  
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSDLVSKEAISVAHLNHHLRENAANEQNVVETFCERHG 80

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               I    +  +    Q G+   AR  RY    +     N   +  AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I ++  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKREVRGGYAI-RPFLPITKAEIIAYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|304385528|ref|ZP_07367872.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus acidilactici DSM
           20284]
 gi|304328032|gb|EFL95254.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus acidilactici DSM
           20284]
          Length = 457

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 13/190 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A ++VAVS G DS  L+ AL   L+  +  + +     V+H LR  +  E  ++   C++
Sbjct: 20  APVVVAVSTGVDSTVLINAL---LAATNLAENRLIIAHVNHQLRSQSVQEEEFLRQWCAK 76

Query: 80  LRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            R+      W +   P TG+ AAAR  RY   ++  +  +A  ++TAH   +Q E+  M+
Sbjct: 77  RRLTFVSTKWSRELHPDTGVEAAARRFRYDFFAKVMQRYHANTLLTAHNATEQAESFLMQ 136

Query: 139 SQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R     G  LS   G  +   +     + RPFL+  +  + +   + +++W ED +N 
Sbjct: 137 VVR-----GGWLSQLRGTPEERSFATGRLV-RPFLKISKPTLVALAQENHLTWFEDETNQ 190

Query: 196 DDRFERVRVR 205
            D + R RVR
Sbjct: 191 QDDYLRNRVR 200


>gi|290977196|ref|XP_002671324.1| predicted protein [Naegleria gruberi]
 gi|284084892|gb|EFC38580.1| predicted protein [Naegleria gruberi]
          Length = 598

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 6/188 (3%)

Query: 24  VAVSGGSDSMGLLIALH---SVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           VAVSGG DSMG  I +      L  +    ++  A+ VDH +RE ++ E+ YV +V ++ 
Sbjct: 124 VAVSGGGDSMGTAILVKKWADYLKQKKGIDMEVVALIVDHQIREESEHEMLYVHEVLTKT 183

Query: 81  RIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
               +V  ++   P  Q      AR  R  ++S    +    L+++ H   D +ET+  R
Sbjct: 184 VGYKNVFCFQCLWPDNQKKQQRIARLKRQLIMSSECVSQKIDLLISGHHKQDNIETMIHR 243

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                   G+ G+  +    + D  + ++RP L     ++++   Q NI W EDP N+D+
Sbjct: 244 VAFSSGINGLNGIPLIYSYCVADATIMLARPGLVFDCNELKAVCTQYNIKWVEDPKNSDE 303

Query: 198 RFERVRVR 205
           R  R  +R
Sbjct: 304 REFRSIIR 311


>gi|223041688|ref|ZP_03611884.1| tRNA (Ile)-lysidine synthase [Actinobacillus minor 202]
 gi|198246543|gb|ACH82232.1| tRNA (Ile)-lysidine synthase [Actinobacillus minor 202]
          Length = 423

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   LVA+SGG DS+        +L      K+   A+ V H L   A   V +    C 
Sbjct: 22  PPSFLVALSGGVDSV-------VLLHLLHRLKLPLRAVHVHHGLSPNADQWVAFCQHYCQ 74

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I    V +     + G+ A ARE RY  I E  +  +  +++TAH  DDQ ET  + 
Sbjct: 75  QQAIP-LCVKYVQVNGKKGIEAEAREKRYQTIRETRE--HNEVVVTAHHLDDQAETFLLA 131

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    KG  LS M   + +     I RP L   + DI ++   +N+SW ED SN    
Sbjct: 132 LKRGSGVKG--LSAM-QAVNFSQKFPIFRPLLAVSKNDILAYAQSQNLSWIEDESNQSTD 188

Query: 199 FERVRVRRFV 208
           ++R  +R  V
Sbjct: 189 YDRNFLRHKV 198


>gi|332290166|ref|YP_004421018.1| hypothetical protein UMN179_02108 [Gallibacterium anatis UMN179]
 gi|330433062|gb|AEC18121.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
          Length = 431

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 13/188 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+ +SGG DS  +L+ L   L++R    +KF AI + H +   A   + +   +C +  +
Sbjct: 25  LIGLSGGVDST-VLLHLFVRLAERM--PLKFRAIHIHHGISPNADHWLNHCRQLCQQFNV 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
             S    +  + Q  + A AR+ RY  I +H    +  +++TAH  DDQ ET  +  +R 
Sbjct: 82  PFSFEKVQLQQ-QRNIEAQARQVRYQAIQQHLN--HNEMLVTAHHLDDQSETFLLALKR- 137

Query: 143 YAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               G G+ G+    T+    ++ I RP L   R  +  +L +  ++   D SN D R+E
Sbjct: 138 ----GSGVKGLAAMPTLSRLFSVPIFRPLLSVTRRQLEQYLAENQLTAIFDESNDDLRYE 193

Query: 201 RVRVRRFV 208
           R  +R  V
Sbjct: 194 RNFLRHQV 201


>gi|319762814|ref|YP_004126751.1| tRNA(ile)-lysidine synthetase [Alicycliphilus denitrificans BC]
 gi|330824894|ref|YP_004388197.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans K601]
 gi|317117375|gb|ADU99863.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans BC]
 gi|329310266|gb|AEB84681.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans K601]
          Length = 335

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 22/185 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG+DS  LL+A     + R  G++   A  V H L+  A    ++   +C+RL+
Sbjct: 18  LAVGLSGGADSTALLLAC----AGRWPGQVH--AFHVHHGLQAAADGFEQHCVALCARLQ 71

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYAL-----ISEHAKTINATLIMTAHTFDDQLET 134
           +  SV  V  +++  Q+    AAR+ARY       +   A+    T+ +  H  DDQ+ET
Sbjct: 72  VPLSVRRVDARHASGQS-PEDAARQARYKAFEALALDNQARAAIGTIALAQHA-DDQVET 129

Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           + +   R     G G++G+           L  SRP LR    D+R++L Q+   W EDP
Sbjct: 130 LLLALSR-----GAGVAGLAAMPAQWERGGLHWSRPLLRVAGADVRAWLQQQGEHWVEDP 184

Query: 193 SNTDD 197
           +N D+
Sbjct: 185 TNADE 189


>gi|205351573|ref|YP_002225374.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271354|emb|CAR36147.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 403

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 5/151 (3%)

Query: 51  IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110
           +   AI + H L   A   VR+   VC R ++   V     +    G+ A AREARY   
Sbjct: 16  VTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGLGIEAHAREARYRAF 75

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           ++    +   ++ TA   DDQ ET  +  +R     G+   G C      L L   RP L
Sbjct: 76  AQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGECSPFAGTLLL---RPLL 130

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           R  R+ +  + ++  + W ED SN DD ++R
Sbjct: 131 RETRKTLEQWAVRHGLCWIEDESNQDDAYDR 161


>gi|301062530|ref|ZP_07203173.1| tRNA(Ile)-lysidine synthetase [delta proteobacterium NaphS2]
 gi|300443387|gb|EFK07509.1| tRNA(Ile)-lysidine synthetase [delta proteobacterium NaphS2]
          Length = 478

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 85/189 (44%), Gaps = 16/189 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVAVSGG DS+ +L+ L S L D     +       DH LR    + E R+V+ +   +
Sbjct: 24  VLVAVSGGPDSV-VLLDLLSRLKDAL--SLTLVVAHFDHGLRPRDDEGETRFVAALADAM 80

Query: 81  RIAHSVVSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +    V+ K   P  G    L   AR+ RY  +        A  I   HT DDQ ETV 
Sbjct: 81  NLP--FVTEKALSPPGGNGISLEEEARDLRYEFLYGAKAAHGAHKIALGHTLDDQAETVL 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R       GLSG+      D    I RP +   R +I  +L  RN+    DPSN +
Sbjct: 139 MRLLRGSGP--TGLSGIPPVRHPD----IIRPLIEVTRLEIERYLAHRNLKHITDPSNFE 192

Query: 197 DRFERVRVR 205
            +  R R+R
Sbjct: 193 KQHLRNRIR 201


>gi|217965695|ref|YP_002351373.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23]
 gi|217334965|gb|ACK40759.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23]
 gi|307569758|emb|CAR82937.1| bifunctional protein TilS/HprT [Listeria monocytogenes L99]
          Length = 648

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 83/188 (44%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A +E   V   C R  
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSDLVPKEAISVAHLNHHLRENAANEQNVVETFCERHG 80

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               I    +  +    Q G+   AR  RY    +     N   +  AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I ++  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|149183227|ref|ZP_01861672.1| hypothetical protein BSG1_17246 [Bacillus sp. SG-1]
 gi|148849060|gb|EDL63265.1| hypothetical protein BSG1_17246 [Bacillus sp. SG-1]
          Length = 467

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 87/193 (45%), Gaps = 13/193 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           IL AVSGG DS+ LL   H +   R+   +K +A+ VDH  R E + +E+ +V   C  +
Sbjct: 24  ILAAVSGGPDSLSLL---HFLNKYRNLWNVKVAAVCVDHMFRGEQSYEELLFVKKTCEEM 80

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I        V       + GL   AR ARY L +   K    T +   H  DDQ+ET+ 
Sbjct: 81  DIPFFGERLNVQGMLDDQKAGLQEGARNARYHLFARLIKDEGFTKLAFGHHGDDQVETIL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           M+  R  +    G + +   +  D     I RP L   +E+I  +  +  +    DPSN 
Sbjct: 141 MQLTRGSS----GRAKIGIPVQRDFYGARIIRPLLCLSKEEILKYCSETGLQPKFDPSNE 196

Query: 196 DDRFERVRVRRFV 208
              + R R R+ V
Sbjct: 197 KKDYTRNRFRQEV 209


>gi|330872710|gb|EGH06859.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 441

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    S   +   AI V H L+  A     +   VC  L +A
Sbjct: 26  VGFSGGLDSTVLLHLLAELARRESLPALH--AIHVHHGLQAAADAWPEHCRQVCQALDVA 83

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V  K  +P   L  AAR+ARY   ++  +     +++T    DDQ ET+  R  R  
Sbjct: 84  FELVRVK-VEPGASLEQAARQARYTAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M +         ++RP L   R ++ S+  Q+ + W EDPSN D +F R  
Sbjct: 141 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARQQGLRWVEDPSNDDQQFSRNF 197

Query: 204 VRRFV 208
           +R  V
Sbjct: 198 LRSQV 202


>gi|305680519|ref|ZP_07403327.1| tRNA(Ile)-lysidine synthetase [Corynebacterium matruchotii ATCC
           14266]
 gi|305660050|gb|EFM49549.1| tRNA(Ile)-lysidine synthetase [Corynebacterium matruchotii ATCC
           14266]
          Length = 302

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 94/198 (47%), Gaps = 28/198 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +L+ +SGG+DS+GL+ A  +   D         A+ VDH L+ ++A    R V+   S  
Sbjct: 33  VLIGLSGGADSLGLVAAALAEGRD-------VLALCVDHGLQPDSATVADRAVAMARSLG 85

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             A SV   K       + A AREARY AL++  A    +  +  AHT DDQ ET  + S
Sbjct: 86  AEARSV---KVQVKPGNIEAQAREARYKALMT--AAAAESRSVWVAHTMDDQAETYLLGS 140

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R  A  GM +SG            + RPFL  RR D  +   +  +    DP N D RF
Sbjct: 141 LRGRA-VGMPVSGT-----------VIRPFLSVRRADTVAACAELGLEVWHDPMNADPRF 188

Query: 200 ERVRVRRFVRDI--DLHA 215
            RVRVR  V  +  D+H 
Sbjct: 189 RRVRVRTEVLPLLADIHG 206


>gi|227432630|ref|ZP_03914606.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351600|gb|EEJ41850.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 435

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 15/190 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +   ++   +P  ++VAVSGG DS+ L+ AL       S  K       V++  RE +
Sbjct: 8   EKILQTIKQYNWPETVIVAVSGGVDSVVLVHAL-------SKTKANLVIAHVNYRFREES 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D+  +V  + ++         W++  P   +  AAR+ RY    E A+  +   I  AH
Sbjct: 61  DDDADFVRQLATQTGAIFEEQVWQHI-PDHAVEKAARQFRYDFFEELAQKYHTNTIAVAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ETV ++  R    + MG  GM        N  + RPFL   ++++ ++     +
Sbjct: 120 HADDQAETVLLKMIRGGRLQQMG--GMQTK-----NHKVIRPFLSITKQELITYAQDNQL 172

Query: 187 SWCEDPSNTD 196
            W +D +N D
Sbjct: 173 GWRQDKTNFD 182


>gi|311064792|ref|YP_003971517.1| tRNA(Ile)-lysidine synthetase TilS [Bifidobacterium bifidum
           PRL2010]
 gi|310867111|gb|ADP36480.1| tRNA(Ile)-lysidine synthetase TilS [Bifidobacterium bifidum
           PRL2010]
          Length = 372

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 93/176 (52%), Gaps = 7/176 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L      V +  S+G I+  A+ VDH L+E + +  +  +  C  L 
Sbjct: 45  VLVACSGGRDSMALAAVAGIVCA--SWG-IRCGAVVVDHRLQEHSAEVAQSAARRCCGLG 101

Query: 82  IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +A  +VV  + S    G+ AAAR+ARY  +++ A+  +A  ++ AHT DDQ ETV M   
Sbjct: 102 LAPVTVVPVEVSGDGHGVEAAARDARYRALADTARRESAACVLLAHTGDDQAETVLMDVL 161

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R        L+GM   +  D  +  +RPFLR  R D         I+W +DP+N D
Sbjct: 162 RSSGLD--ALAGMPRIVERD-GVRFARPFLRLTRADTTGICEDLGITWWDDPTNGD 214


>gi|322691770|ref|YP_004221340.1| hypothetical protein BLLJ_1581 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456626|dbj|BAJ67248.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 388

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +  S G ++  A+ VDH L+  ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQAGSERVASEAADRCRALG 102

Query: 82  IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +   ++  +N+  Q    GL AAAR+ARY  +   A    A  ++ AHT DDQ ETV + 
Sbjct: 103 LGPVIM--RNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIG 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R    +G+  L+GM   +        +RP L   R +         + + +DP+N D
Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215


>gi|262166320|ref|ZP_06034057.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus VM223]
 gi|262026036|gb|EEY44704.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus VM223]
          Length = 440

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 92/204 (45%), Gaps = 19/204 (9%)

Query: 12  FVRSLV-YPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRET 65
           FV+ L  YP   LV A+SGG DS  LL  L       + G+ +F     A+ V H L   
Sbjct: 8   FVQQLARYPFRKLVLALSGGVDSRVLLSLL-------ARGRDEFGWDAEAVHVHHGLSSN 60

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A    +     C    I+  +   + +      +   AREARY  +S+H  +   TL++ 
Sbjct: 61  ADQWAQDCQTWCQAANISCQIERVQLAVGSGESIEKMAREARYQALSQHVGS--DTLLLL 118

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
               DDQLET  +  +R    KG+                ++RP L   R+DI ++ +Q+
Sbjct: 119 GQHADDQLETFLLALKRGSGPKGLAAMAAYGPFAQGH---LARPLLTVSRQDIEAYAMQK 175

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
            +SW  D SN D R+ER  +R  +
Sbjct: 176 KLSWVTDESNFDTRYERNFLRHHI 199


>gi|227546576|ref|ZP_03976625.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133972|ref|YP_004001311.1| mesj [Bifidobacterium longum subsp. longum BBMN68]
 gi|227212893|gb|EEI80772.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|311773271|gb|ADQ02759.1| MesJ [Bifidobacterium longum subsp. longum BBMN68]
          Length = 388

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 13/179 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +  S G ++  A+ VDH L+  ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCT--SMG-VRCGAVIVDHGLQAGSERVASEAADRCRALG 102

Query: 82  IAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +   ++  +N+  Q    GL AAAR+ARY  +   A    A  ++ AHT DDQ ETV + 
Sbjct: 103 LGPVIL--RNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIG 160

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R    +G+  L+GM   +        +RP L   R +         + + +DP+N D
Sbjct: 161 LLR---SRGVDALAGM-PQVFTRSGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGD 215


>gi|325679361|ref|ZP_08158946.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8]
 gi|324108958|gb|EGC03189.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8]
          Length = 444

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 25/193 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LV +SGG+DS  LL+ L  +  D        SA  V+HC+R E A  +  +   +C  L
Sbjct: 25  LLVGLSGGADSAALLLCLDELGYD-------VSACHVNHCIRGEEADRDQHFCERLCEGL 77

Query: 81  RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            I        V ++  + P +     AR  RY  + E    I+A  I TAH  DD LET 
Sbjct: 78  GIGIIVRRVDVPAYCRANPVSE-EEGARLLRYNALQE----ISADKICTAHNLDDCLETT 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R     G GL G+        N  I RP + C R DI ++L +R   +  D +N 
Sbjct: 133 LFNLAR-----GSGLKGIASIPPVRGN--IIRPLIECSRADIEAYLAERGQDFVTDSTNL 185

Query: 196 DDRFERVRVRRFV 208
            D + R ++R  V
Sbjct: 186 LDEYSRNKLRHKV 198


>gi|289668288|ref|ZP_06489363.1| cell cycle protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 469

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 84/182 (46%), Gaps = 11/182 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS    + LH + +   + +    A+ V H L   A     +    C  L+
Sbjct: 52  VLLAYSGGMDSN---VLLHLLAATPRYRQAGLRALHVHHGLHTDADAWAAHCQRSCDALQ 108

Query: 82  IAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +V     +    GL AAAR AR+   + HA      L + AH  DDQ ET  +R+ 
Sbjct: 109 VPLQIVQVHVERDSGLGLEAAARNARHTAFA-HALAAGEWLAL-AHHRDDQAETFLLRAL 166

Query: 141 RDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R  A    GL+ M       +  LW  RP L   R D+ ++ L + + W EDPSN D R 
Sbjct: 167 R--ASGPEGLAAMRPQRPFANGTLW--RPLLAHARADLLAYALAQGLRWIEDPSNADPRH 222

Query: 200 ER 201
           +R
Sbjct: 223 DR 224


>gi|156740870|ref|YP_001430999.1| hypoxanthine phosphoribosyltransferase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232198|gb|ABU56981.1| hypoxanthine phosphoribosyltransferase [Roseiflexus castenholzii
           DSM 13941]
          Length = 676

 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 103/228 (45%), Gaps = 28/228 (12%)

Query: 4   SPIESVRFFVRS--LVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           S ++SVR  +R   ++ P A ++VAVSGG DS+ LL AL  +  D +        + +DH
Sbjct: 3   SLVDSVRAMLRRYRMIMPGAPVVVAVSGGPDSLCLLDALVHLRDDLA---CDLHVVHLDH 59

Query: 61  CLR---ETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAK 115
            LR     A+      +  C  L      V  +    +    L AA R ARY L++  A 
Sbjct: 60  RLRGAEAAAEAAFVAETAACLNLPCTVEAVDVRALALERNLNLHAAGRLARYRLLARVAL 119

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--------------- 160
           TI A  + TAH  DDQ ETV +   R       GL GM   + ++               
Sbjct: 120 TIGAQAVATAHHADDQAETVLLHLVRGAGVA--GLRGMRPVVAWEEWRTFAGDPSLQADH 177

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           L   + RP L   R  I ++  +R ++   DPSN D R+ R R+R+ V
Sbjct: 178 LRPRLIRPLLDVPRARIEAYCTERGLTPRRDPSNADRRYLRTRIRQDV 225


>gi|154505539|ref|ZP_02042277.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149]
 gi|153794197|gb|EDN76617.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149]
          Length = 469

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++  +SGG+DS+ LL  L  +     F  I   A+ V+H LR E AK + R+    C   
Sbjct: 21  VIAGISGGADSICLLFVLLRLQEKIGFDVI---AVHVNHGLRGENAKRDERFTETFCRER 77

Query: 81  RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +     H  V    ++ +  +  A R  R     E       T I  AH  +D  ET+ 
Sbjct: 78  NVPCIVYHENVKEIAAQKKLSVEEAGRLVRRKAFEEVRIRYGGTKIALAHHQNDNAETML 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G+ G+  + +  +N ++ RP L   R++I  +L +  +S+CED +N  
Sbjct: 138 LNLAR-----GTGIRGL--SGIRPVNGYMIRPLLGINRKEIEYYLKEHQLSYCEDETNAG 190

Query: 197 DRFERVRVR 205
           D + R R+R
Sbjct: 191 DEYTRNRIR 199


>gi|312883825|ref|ZP_07743544.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368574|gb|EFP96107.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 436

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 24/197 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC-- 77
             I++A+SGG DS  +L  L     +     I   A+ V H L   A D  +     C  
Sbjct: 20  GQIVLALSGGLDSRVMLALLKKYCENTGSKAI---AVHVHHGLSIHADDWAKQCQKWCLE 76

Query: 78  SRLR--IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           S L   + H  +  K       L  +AR+ARY  +S+H    +  +++T    DDQLET 
Sbjct: 77  SGLECFVEHVSLDLKGK----SLEESARDARYVALSKHLNEND--VLLTGQHADDQLETF 130

Query: 136 YMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            +  +R    +G+     ++ M + +L        RP L  +R DI S+    N+ W  D
Sbjct: 131 LLALRRGSGPRGLSCMPQVAPMGNALLV-------RPLLHVKRHDIESYAKDSNLEWLND 183

Query: 192 PSNTDDRFERVRVRRFV 208
            SN D RFER  +R  +
Sbjct: 184 ESNQDKRFERNYIRHTI 200


>gi|77918602|ref|YP_356417.1| cell cycle protein [Pelobacter carbinolicus DSM 2380]
 gi|77544685|gb|ABA88247.1| cell cycle protein [Pelobacter carbinolicus DSM 2380]
          Length = 458

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 93/207 (44%), Gaps = 22/207 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           ILV +SGG+DSM LL  L  V       ++   A  +DH +R  + D+  +V+  C R  
Sbjct: 21  ILVGLSGGADSMVLLDVLLHVADSL---QLAILAAHLDHGMRPESADDAAFVARFCRRRD 77

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L + H  V     + + GL  AAREAR   + + A+      I   H  +DQ+ET   
Sbjct: 78  VPLTVGHRDVPALARQHKQGLEEAAREARREFLQQTARVEGCRFIALGHHRNDQVETFLH 137

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G GLSG+    L        RP L   R+DI ++L    I   ED SN D 
Sbjct: 138 RLLR-----GSGLSGLAGMRLRSGPF--IRPLLSFSRQDILAYLDDHQIPHVEDASNADT 190

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQ 224
            F R R+R        H L  +++ F 
Sbjct: 191 VFTRNRLR--------HELLPRLRDFN 209


>gi|72080544|ref|YP_287602.1| hypothetical protein MHP7448_0205 [Mycoplasma hyopneumoniae 7448]
          Length = 286

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 22/188 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79
           ++ VSGGSDSM LL             K K   + V H    LR  A  E   VS  C +
Sbjct: 1   MIGVSGGSDSMFLL------------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQK 48

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LETV+++ 
Sbjct: 49  YNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQK 108

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++       G+    +      N+ I RPFL  R +++ IR    Q+ I + +D SN   
Sbjct: 109 KQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQIIR-ICQQKRIPYLDDQSNFTG 163

Query: 198 RFERVRVR 205
           +++R ++R
Sbjct: 164 KYQRNQIR 171


>gi|327438074|dbj|BAK14439.1| predicted ATPase of the PP-loop superfamily [Solibacillus
           silvestris StLB046]
          Length = 468

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +L+A SGG DSM LL   +     + +  I+ +   VDH LR E +  + ++V   C   
Sbjct: 24  LLIACSGGVDSMALLSFFYHF---QHYFNIELAVAHVDHMLRGEQSAQDRQFVEQACEDW 80

Query: 81  RI---AHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   + ++   +  K + G M A  R+ RY        T   T ++TAH  DDQLE++ 
Sbjct: 81  AIPFYSCAIPIAEIQKKEGGNMQAICRKERYHFFETVMHTHKFTKLVTAHHADDQLESML 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   +  A    GL G+  +  +     + RPFL   +++I  +L  +   + EDPSN  
Sbjct: 141 MAMTK--ASSLNGLKGILPSRKFQ-QFTVIRPFLMVTKDEIGEYLHSKGHLYREDPSNAK 197

Query: 197 DRFERVRVRRFV 208
           + + R R R  V
Sbjct: 198 NDYTRNRFRHNV 209


>gi|293375859|ref|ZP_06622125.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909]
 gi|325841824|ref|ZP_08167484.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1]
 gi|292645504|gb|EFF63548.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909]
 gi|325489854|gb|EGC92206.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1]
          Length = 459

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 6/187 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVSGG+DSM LL  L  +   +    +      V+H  RE +  +   V+ +     
Sbjct: 21  VVVAVSGGADSMALLNLLVEI---KELYNLHLVVAHVNHKKRENSDLDEVLVNKIALENG 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + + V               AR  RY      A    A  I+TAH  DD LET   R   
Sbjct: 78  LDYEVYYLPKCLTNENFHEYARRERYNFFKRVAANYKADCIVTAHHADDHLETQIYRLL- 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            Y     GL G+   + Y   L I RP +   ++DI  +  +  I + ED SN  D + R
Sbjct: 137 -YHSTVSGLIGIEPIVEY-CGLKIIRPLIEVTKDDIYKYCSESRIEYREDESNQSDVYTR 194

Query: 202 VRVRRFV 208
            R+R+++
Sbjct: 195 NRIRKYI 201


>gi|302381981|ref|YP_003817804.1| PP-loop domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192609|gb|ADL00181.1| PP-loop domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 409

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 130/309 (42%), Gaps = 31/309 (10%)

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
           AI+VDH L   A    R  ++    +        W+  KP TGL AAAR AR+ALI+E A
Sbjct: 20  AITVDHGLNPDAAAWSRRCAEAARAVGADWVERRWEGDKPATGLPAAARHARHALIAEAA 79

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-----TILYDLNLWISRPF 169
           +   A +++ AHT +D  E+ +MR+      +G  L G+ +            L + RP 
Sbjct: 80  RDAGAKVVLIAHTANDIAESDWMRA------RGTMLGGLREWSPSPAWPEGRGLMLLRPM 133

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-DLHAL-YLKMKKFQDLR 227
           +  RRED+R +L      W EDP N  + F R + RR +  + +   L  L+   ++  R
Sbjct: 134 VNERREDLRGWLRSAGEGWIEDPGN--EGFGRGKARRALLPLPEGEGLSVLERSDWERER 191

Query: 228 VK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY 284
           V+   +  +     P  L  H  ++ A S   L          L ++     G   LP  
Sbjct: 192 VRGLALAGSHRNPSPFRLKAHRSALRASSALPLGEGFIWAGEALAMNLLCAAGHDRLPRS 251

Query: 285 RSMERVMLFLK---------SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335
             +  +   L          +G R   S  R++I R A  L      R    L L  +  
Sbjct: 252 ERLAALADRLAGGDPFTATLAGARIEASPDRMIIGREAGEL----KRRPPGPLALDTDTP 307

Query: 336 TVWDGRYQF 344
            VWDGRY+ 
Sbjct: 308 AVWDGRYEI 316


>gi|325278075|ref|ZP_08143594.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. TJI-51]
 gi|324096782|gb|EGB95109.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. TJI-51]
          Length = 247

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 87/202 (43%), Gaps = 42/202 (20%)

Query: 24  VAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +A SGG DS  LL     +L+D  RS       A+ V H L+  A     +   VC+ L 
Sbjct: 15  IAFSGGLDSTVLL----HLLADYARSHAVPPLRAVHVHHGLQAAADAWPAHCQAVCANLG 70

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVY---- 136
           IA  V+  + S P   L  AAR+ARYA   +   T+    ++ T    DDQ ET+     
Sbjct: 71  IALEVIHVQVS-PGASLEQAARDARYAAFQQ---TLGPGDILFTGQHCDDQAETLLLRLL 126

Query: 137 ----------MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
                     M  QR   +  +                  RP L C R+ ++++   R +
Sbjct: 127 RGAGLRGLAAMPGQRPLGQGSL-----------------VRPLLGCARQLLQAYAQARGL 169

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
           +W +DPSN D RF R  +RR V
Sbjct: 170 AWIDDPSNADTRFARNFLRRKV 191


>gi|313639795|gb|EFS04533.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL S4-171]
          Length = 648

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 10/191 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H +       K   S   ++H LRE A  E   V + C +  
Sbjct: 24  LLVAVSGGPDSLALL---HFLQMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYCEKHE 80

Query: 82  IA---HSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I      V   K +K  Q G+   AR ARY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFFIEEVNVKKRAKTMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R      +G SGM           I RPFL   + +I  +  +  +++  D SN+  
Sbjct: 141 RLVR--GSSSIGWSGMQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDESNSSP 197

Query: 198 RFERVRVRRFV 208
           ++ R R R+ +
Sbjct: 198 KYTRNRYRKEI 208


>gi|312128221|ref|YP_003993095.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis
           108]
 gi|311778240|gb|ADQ07726.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis
           108]
          Length = 456

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+  SGG DSM LL  +  +  + S   +  +   ++H LR  A D+ ++V ++C R  
Sbjct: 23  VLIGCSGGVDSMVLLDCICRLKDEYS---LDITVAHLNHMLRPEADDDEKFVIEMCKRYN 79

Query: 82  IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I      V     K + GL    A R ARY+   E A+ +N   I+  H  +D +ET ++
Sbjct: 80  IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAQELNIDRILLGHNKNDVVETFFL 139

Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              R     G G+ G+     + D+   I+RP +   RE+I  F    NI +  D +N  
Sbjct: 140 NLFR-----GSGMEGLASVPPVRDI---IARPLINVSREEIEEFAKVNNIPFVVDKTNFS 191

Query: 197 DRFERVRVR 205
            +++R  VR
Sbjct: 192 LKYKRNIVR 200


>gi|291523831|emb|CBK89418.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Eubacterium rectale DSM
           17629]
          Length = 514

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 156/341 (45%), Gaps = 73/341 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78
           +LVA+SGG+DS+ LL+ L+ +   +   ++ F+  A+ V+H +R   ++++ R+ SD+C 
Sbjct: 21  VLVALSGGADSVCLLLVLNEI-KRQCADELDFALEAVHVEHGIRGAESREDARFASDLCE 79

Query: 79  RLRI---AHSVVSWKNSKPQT-GLMAAAR----EA---------RYALISEHA-----KT 116
           RL I    HSV   + +K    GL  AAR    EA         RY    E A     +T
Sbjct: 80  RLNIPCHVHSVDVPQYAKSHGLGLEEAARILRYEAFEKEVARILRYEAFEEEAGRYPCET 139

Query: 117 INAT----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            NA+          ++  AH  +D  ETV  +  R    K  GL+GM    + +   +I 
Sbjct: 140 ANASDQKQGNSRQAVVAVAHHMEDNAETVLFQMLRGSGAK--GLAGMHPVSVKNGVTYI- 196

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR------------RFVRDIDLH 214
           RP L   R  I  +L +   ++  D +N D  + R ++R            R +  I+  
Sbjct: 197 RPLLSATRAQIEEYLKENGQAFVTDATNADTAYSRNKLRHDVFPLLLQINDRAIEHINES 256

Query: 215 ALYLK-MKKF--QDLRVKVNNAVA-------MLIPKYLTVH--MRSIIA------ISQDI 256
           A  L  M  F  Q L+   ++ V+       + I ++ ++H  ++S +A       S  +
Sbjct: 257 AGQLAVMNDFYEQQLKEACDSMVSKKEGRVILEISRFESLHPALKSGVARECIHLASGRL 316

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVMLF 293
            +I ST +  L++++    G +I+LP      +S   V+LF
Sbjct: 317 KDITSTHISALVKLAGQQSGRKINLPYGIIAEKSFGDVILF 357


>gi|323340112|ref|ZP_08080377.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus ruminis ATCC 25644]
 gi|323092489|gb|EFZ35096.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus ruminis ATCC 25644]
          Length = 450

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 13/200 (6%)

Query: 14  RSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           + +  PA+  +LVAVS G DSM LL  L   L ++    ++ +   VDH LRE +K E  
Sbjct: 16  KKMGVPANETVLVAVSTGCDSMTLLSLLQR-LPEKMRPTVQVAY--VDHQLREQSKKETD 72

Query: 72  YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +++  C +  +      W K   P+ G+  +ARE RY    +  +      ++TAH  +D
Sbjct: 73  FITKYCQKNGLVLFKNVWEKEFHPKKGIEESAREFRYRFFEKIMEETGIEYLLTAHHSND 132

Query: 131 QLETVYMRSQR--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           Q ET+ M++ R  D  +    L G+     +     + RP L   +E ++ +  +  I +
Sbjct: 133 QAETILMKAVRGGDLEQ----LVGIKSARTFGTGKLL-RPLLHFSKETLKEYAERNQIKY 187

Query: 189 CEDPSNTDDRFERVRVRRFV 208
            ED +N  D   R R+R  V
Sbjct: 188 FEDETNALDDVLRNRLRHHV 207


>gi|167772098|ref|ZP_02444151.1| hypothetical protein ANACOL_03472 [Anaerotruncus colihominis DSM
           17241]
 gi|167665896|gb|EDS10026.1| hypothetical protein ANACOL_03472 [Anaerotruncus colihominis DSM
           17241]
          Length = 467

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 19/193 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           +  AVSGG+DS+ LL  L + L     G +   A  ++HCLR  E+ +DE + V  +C++
Sbjct: 21  VAAAVSGGADSVALLDFLCAQLD---LG-LTVRACHLNHCLRGEESDRDE-QLVRTMCAQ 75

Query: 80  LRIAHSV--VSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             +A  V  V  +      GL    AAREARYA   E A+T +   I TAHT  D  ETV
Sbjct: 76  YGVALDVRRVDVRALAHTRGLSLETAAREARYAFFEEVART-HGCKIATAHTLSDAAETV 134

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G G+ G+C   +  +   I RP + C R    ++     + +  D +N 
Sbjct: 135 VLNLAR-----GTGIVGLCG--IPPVRGDIVRPLIGCTRAQTEAYCAAHGLCYVTDSTNL 187

Query: 196 DDRFERVRVRRFV 208
            D   R  +R  +
Sbjct: 188 TDSCTRNHIRHNI 200


>gi|237736633|ref|ZP_04567114.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420495|gb|EEO35542.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium mortiferum ATCC 9817]
          Length = 441

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 19/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLR--ETAKDEVRYVSDVC 77
           I+V  SGG DS+ L+  L  +       KI F  +   ++H LR  E  +DE   ++   
Sbjct: 23  IVVGFSGGPDSVFLVEMLLKLRE-----KIDFDIVLVHINHLLRGEEAQRDEDFSINYGK 77

Query: 78  SR-LRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           S+ L++    ++  +   + GL    A REARY+   E  +  N   I  AH  DDQ+ET
Sbjct: 78  SKGLKVFARKINITSLGKEKGLSLEEAGREARYSFYKEVLEKTNGNKIALAHNKDDQIET 137

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
              R  R     G GLSG+ + I    + +I RP     + +I ++L + NIS+C D +N
Sbjct: 138 FMFRLTR-----GTGLSGL-EGIATKRDRYI-RPISEIYKSEIVNYLDENNISYCIDSTN 190

Query: 195 TDDRFERVRVR 205
            ++ F R  +R
Sbjct: 191 LENEFTRNSIR 201


>gi|300724776|ref|YP_003714101.1| TilS, tRNA (Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631318|emb|CBJ92013.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC
           19061]
          Length = 443

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 10/184 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF----GKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           IL+  SGG DS  +L+ L + L D         I   AI + H L   A   V +   +C
Sbjct: 22  ILLGFSGGLDST-VLLHLLTRLRDEHLHTDRAPIALRAIHIHHGLNAKADLWVEHCRQMC 80

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +  ++       +    Q G+ AAAREARY    +  +     +++TA   DDQ ET  +
Sbjct: 81  ADWKVDFRTEKVRLDIRQNGIEAAAREARYQSFQQMLQP--DEILITAQHLDDQAETFLL 138

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             +R       GLS M   + +     I RP L   R ++  +   + + W ED SN DD
Sbjct: 139 ALKRGSGP--AGLSSMPSRMPFSGTTLI-RPLLNVSRAELEVYARGKELEWIEDDSNQDD 195

Query: 198 RFER 201
           R++R
Sbjct: 196 RYDR 199


>gi|238922945|ref|YP_002936458.1| cell cycle protein MesJ, putative [Eubacterium rectale ATCC 33656]
 gi|238874617|gb|ACR74324.1| cell cycle protein MesJ, putative [Eubacterium rectale ATCC 33656]
          Length = 514

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 149/341 (43%), Gaps = 73/341 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78
           +LVA+SGG+DS+ LL+ L+ +   +   ++ F+  A+ V+H +R   ++++ R+ SD+C 
Sbjct: 21  VLVALSGGADSVCLLLVLNEI-KRQCADELDFALEAVHVEHGIRGAESREDARFASDICE 79

Query: 79  RLRI---AHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTI----------------- 117
           RL I    HSV V    +    GL  AAR  RY    +    I                 
Sbjct: 80  RLNIPCHVHSVDVPQYAASHGLGLEEAARILRYEAFEKEVARILRYEAFEEGAGRYPCEP 139

Query: 118 -NAT----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            NA+          ++  AH  +D  ETV  +  R    KG  LSGM    + +   +I 
Sbjct: 140 ANASDQKQGNSRQVVVAVAHHMEDNAETVLFQMLRGSGAKG--LSGMHPVSVKNGVTYI- 196

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR------------RFVRDIDLH 214
           RP L   R  I  +L +   ++  D +NTD  + R ++R            R +  I+  
Sbjct: 197 RPLLSATRAQIEEYLKENGQAFVTDATNTDTAYSRNKLRHDVFPLLLQINDRAIEHINES 256

Query: 215 ALYLK-MKKFQDLRVKV---------NNAVAMLIPKYLTVH--MRSIIA------ISQDI 256
           A  L  M  F + ++K             V + I ++  +H  ++S +A       S  +
Sbjct: 257 AGQLAVMNDFYEQQLKEACDSMVSKKEGRVILEISRFECLHPALKSGVARECIHLASGRL 316

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVMLF 293
            +I ST +  L++++    G +I+LP      +S   V+LF
Sbjct: 317 KDITSTHIGALVKLAGQQSGRKINLPYGIIAEKSFGEVILF 357


>gi|258510216|ref|YP_003183650.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476942|gb|ACV57261.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 475

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 93/201 (46%), Gaps = 5/201 (2%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           + FF +  +  AH ++ VSGG DSM LL        +       FS + V H LRETA  
Sbjct: 12  ISFFQQHRLETAHAVLGVSGGVDSMVLLHLCQRAAEEAPSALGGFSVVHVHHHLRETADR 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +  +V   C    I   +   K    +  GL AAAR ARY  +++ A+ +   +I+ AH 
Sbjct: 72  DAAFVERYCREREIPCEIAHVKVVDERGEGLEAAARRARYQALADRAR-VKGGVILVAHH 130

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             D+LET  MR  R     G+G   M      +  + + RP L   + +I  +     + 
Sbjct: 131 AQDELETFIMRLLRGAGPGGLG--AMRPEAEMN-GVRVLRPLLAVEKSEIERYAALHGVP 187

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
             ED +N D RF R RVR+ V
Sbjct: 188 HVEDETNEDPRFFRNRVRQVV 208


>gi|15834848|ref|NP_296607.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg]
 gi|270285014|ref|ZP_06194408.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg]
 gi|301336412|ref|ZP_07224614.1| tRNA(Ile)-lysidine synthase [Chlamydia muridarum MopnTet14]
 gi|61216745|sp|Q9PL79|TILS_CHLMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|7190268|gb|AAF39100.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg]
          Length = 321

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 118/264 (44%), Gaps = 24/264 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  F  SL      L+A+SGGSDS+ L+  L      RS G I F+A+ VD+  RET+
Sbjct: 10  KQLEVFFSSLDKKKKYLLALSGGSDSLLLMYLL------RSRG-ISFTAVHVDYGWRETS 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMT 124
             E   ++ +C R +I   +   + + P   + +   AR+ RY L     K      +  
Sbjct: 63  YQEACDLASLCEREQIPFILDRQEVANPMDFSDIENIARQYRYELFYRLCKERLFAGVFL 122

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H  DDQ ET+    +R +    +G L GM     Y   + + RP L   +  I   L  
Sbjct: 123 GHHADDQAETIL---KRVFEGAHLGNLKGMARYGTYK-GITLLRPLLHITKRQIVEALDN 178

Query: 184 RNISWCEDPSNTDDRFERVRVRR---------FVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             I + +D +N D+RF R R+R          F ++I    L+L  +   +LR  ++   
Sbjct: 179 YRIEYVQDATNADERFLRARMREQLFPYLQEIFGKNIRQPLLFLA-EDSAELREYLDQQA 237

Query: 235 AMLIPKYLTVHMRSIIAISQDILN 258
           A  + + +   +   + + Q++L 
Sbjct: 238 APFLSQVIDNEIGQFLPVGQELLQ 261


>gi|119946581|ref|YP_944261.1| tRNA(Ile)-lysidine synthetase [Psychromonas ingrahamii 37]
 gi|119865185|gb|ABM04662.1| tRNA(Ile)-lysidine synthetase [Psychromonas ingrahamii 37]
          Length = 460

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 18/191 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSRLR 81
           +A+SGG DS+   + LH     R+F K K+S  A  ++H L + A     +  ++C+ L 
Sbjct: 30  IALSGGLDSV---VLLHLFTRLRAFDK-KYSLCAHHINHGLSDNAAHWQLFCENLCASLA 85

Query: 82  I---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +      V+  K  K +T L A ARE RYA ++     ++ + ++TAH  DDQLETV + 
Sbjct: 86  VDFCCSPVILEK--KNRTSLEALAREKRYACLT--GNLLDNSYLITAHHQDDQLETVLLA 141

Query: 139 SQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
            +R     G+ G+  M       L     RP L   R+ + ++     + W ED SN D 
Sbjct: 142 LKRGSGSTGLQGIQKMQKLQKGHL----IRPLLNFSRQQLAAYAELFQLDWVEDESNQDQ 197

Query: 198 RFERVRVRRFV 208
            F+R  +R+ +
Sbjct: 198 DFDRNFIRQTI 208


>gi|197302373|ref|ZP_03167430.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC
           29176]
 gi|197298552|gb|EDY33095.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC
           29176]
          Length = 498

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+  VSGG+DS+ LL  L  +     F  I      V+H LR E A+ +  YV ++C +L
Sbjct: 25  IVTGVSGGADSVCLLFVLCELRKKLGFEVI---VCHVNHQLRAEAAEQDEAYVKELCRKL 81

Query: 81  ----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               RI H  V       +  L  A R  R        +   A  I TAH  +D  ETV 
Sbjct: 82  DVPCRIFHENVELIAKNGKKSLEEAGRIVRSNAFETVCRESGANKIATAHHKNDNAETVL 141

Query: 137 MRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +   R     G GL GMC    +Y   +   RP L   R++I  +L +  IS+C D +N 
Sbjct: 142 LNLAR-----GSGLQGMCGIRPVYGNRI---RPLLCLTRKEIEEWLEEEQISYCTDETNE 193

Query: 196 DDRFERVRVR 205
           +D + R R+R
Sbjct: 194 EDEYTRNRIR 203


>gi|224532919|ref|ZP_03673530.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23]
 gi|224512157|gb|EEF82547.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23]
          Length = 440

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +    +  K+   + G  +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GLSG+       +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----GVNRNIIRPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NI +  D +N  + + R RVR
Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204


>gi|331003927|ref|ZP_08327416.1| hypothetical protein HMPREF0491_02278 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411947|gb|EGG91347.1| hypothetical protein HMPREF0491_02278 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 497

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 92/200 (46%), Gaps = 23/200 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++ VSGG+DS+ LL  L  +   +   +I+   + ++H +R E AK +  +V D C RL
Sbjct: 23  IVLGVSGGADSICLLNILSCI---QKALEIRLFVVHINHGIRGEEAKRDEDFVRDFCKRL 79

Query: 81  RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--------NATLIMTAHTF 128
            +     H  +     + +     A R+ARY+     AK I            I  AH  
Sbjct: 80  NVEFFAFHYDIKKMAREQKISEEEAGRKARYSTFDTVAKKIIQKEGADAQNVKIAIAHNK 139

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD  ET+     R     G G+SG+   +  + N  I RP L   R++I  +L + NI +
Sbjct: 140 DDNAETILHNLSR-----GSGISGLKGILAQNGN--IIRPLLSFSRQEIEEYLSKNNIEY 192

Query: 189 CEDPSNTDDRFERVRVRRFV 208
             D +N ++ + R  +R  V
Sbjct: 193 MTDSTNLENEYTRNVLRNEV 212


>gi|15595133|ref|NP_212922.1| hypothetical protein BB0788 [Borrelia burgdorferi B31]
 gi|216264898|ref|ZP_03436890.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a]
 gi|218249437|ref|YP_002375287.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7]
 gi|223889299|ref|ZP_03623886.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b]
 gi|225549361|ref|ZP_03770333.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a]
 gi|226321219|ref|ZP_03796753.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805]
 gi|226321253|ref|ZP_03796781.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26]
 gi|6136576|sp|O51728|TILS_BORBU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695536|sp|B7J0N4|TILS_BORBZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|2688713|gb|AAC67121.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|215981371|gb|EEC22178.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a]
 gi|218164625|gb|ACK74686.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7]
 gi|223885220|gb|EEF56323.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b]
 gi|225369989|gb|EEG99430.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a]
 gi|226233285|gb|EEH32036.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26]
 gi|226233373|gb|EEH32120.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805]
 gi|312147795|gb|ADQ30454.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi JD1]
 gi|312149540|gb|ADQ29611.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi N40]
          Length = 440

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +    +  K+   + G  +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GLSG+       +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----SVNRNIIRPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NI +  D +N  + + R RVR
Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204


>gi|239617939|ref|YP_002941261.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239506770|gb|ACR80257.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 469

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           ILVAVSGG DSM LL   H ++S +     +    ++DH LR+ + ++E   ++  C + 
Sbjct: 24  ILVAVSGGKDSMALL---HFLVSKKERLGCEICVANMDHGLRDDSGREEAVMIASFCEKH 80

Query: 81  RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +        V  +  +     L  AAR  RY  +    + + A  I  AH  +D +ET+
Sbjct: 81  DVPFYHERRDVTQYHKNNRGLSLEEAARIVRYDFLFNAREKLGADKIALAHHLNDLVETM 140

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+    +  +N  I RP L    ++I  ++    I + EDP+N 
Sbjct: 141 LMRIAR-----GTGLKGVIS--MKPMNNSIIRPLLSVGVQEILDYVTINMIPYKEDPTNV 193

Query: 196 DDRFERVRVR 205
            + ++R  +R
Sbjct: 194 LEVYDRNFIR 203


>gi|195942001|ref|ZP_03087383.1| hypothetical protein Bbur8_03899 [Borrelia burgdorferi 80a]
 gi|221217597|ref|ZP_03589066.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a]
 gi|224533444|ref|ZP_03674037.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a]
 gi|221192543|gb|EEE18761.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a]
 gi|224513406|gb|EEF83764.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a]
          Length = 440

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +    +  K+   + G  +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GLSG+       +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----GVNRNIIRPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NI +  D +N  + + R RVR
Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204


>gi|332290992|ref|YP_004429601.1| tRNA(Ile)-lysidine synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169078|gb|AEE18333.1| tRNA(Ile)-lysidine synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 435

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 93/196 (47%), Gaps = 27/196 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVS 74
           + ILV VSGG DSM LL+        R  G      +SV HC   LR  E+  D+V +V+
Sbjct: 19  SKILVTVSGGLDSMLLLLLC------RQAG----LTMSVAHCNFNLRGVESDGDQV-FVA 67

Query: 75  DVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             C+   I   +  +  S      +T    AARE RY    E +   +   I+TAH  +D
Sbjct: 68  SYCTLHNIPIYIKGFDTSAYAKTSKTSTQIAARELRYQWFKELSVAEDFDYILTAHHLND 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET  +   R     G G+ G+  T +  +N  I RP L+  R+ IR++ L+  + W E
Sbjct: 128 DLETFLINLGR-----GTGIKGL--TGIPVVNGEIVRPLLKFSRKQIRNYALKEGLQWRE 180

Query: 191 DPSNTDDRFERVRVRR 206
           D SN  D + R  +R 
Sbjct: 181 DSSNGTDNYVRNHIRH 196


>gi|222528655|ref|YP_002572537.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455502|gb|ACM59764.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM
           6725]
          Length = 456

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+  SGG DSM LL     +L  +    +  +   ++H LR  A D+ ++V ++C R  
Sbjct: 23  VLIGCSGGVDSMVLL---DCILRLKDKYNLDITVAHLNHMLRPEADDDEKFVIEICKRYN 79

Query: 82  IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I      V     K + GL    A R ARY+   E A+ +N   I+  H  +D +ET ++
Sbjct: 80  IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEVAEELNIDRILLGHNKNDVVETFFL 139

Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              R     G GL G+     + D+   ++RP +   RE+I  +    N+ +  D +N  
Sbjct: 140 NLFR-----GSGLEGLASVPPVRDI---VARPLINISREEIEEYAKLNNVPFVVDKTNFS 191

Query: 197 DRFERVRVR 205
            +++R  VR
Sbjct: 192 LKYKRNIVR 200


>gi|225550286|ref|ZP_03771245.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a]
 gi|225369154|gb|EEG98608.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a]
          Length = 440

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +    +  K+   + G  +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GLSG+       +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----GVNRNIIRPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NI +  D +N  + + R RVR
Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204


>gi|313635123|gb|EFS01457.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL N1-067]
          Length = 648

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 86/191 (45%), Gaps = 10/191 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H +       K   S   ++H LRE A  E   V + C +  
Sbjct: 24  LLVAVSGGPDSLALL---HFLQMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYCEKHE 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    V  +    Q G+   AR ARY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R      +G SGM           I RPFL   + +I  +  +  +++  D SN+  
Sbjct: 141 RLVR--GSSSIGWSGMQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDESNSSP 197

Query: 198 RFERVRVRRFV 208
           ++ R R R+ +
Sbjct: 198 KYTRNRYRKEI 208


>gi|127513547|ref|YP_001094744.1| tRNA(Ile)-lysidine synthetase [Shewanella loihica PV-4]
 gi|126638842|gb|ABO24485.1| tRNA(Ile)-lysidine synthetase [Shewanella loihica PV-4]
          Length = 474

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 93/215 (43%), Gaps = 16/215 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           + P   +    R    PA  LV A SGG DS  L   L   L  +   +  +  + V H 
Sbjct: 19  VKPAAGINSGSRPATKPAMKLVLAYSGGVDSEVLAHGLS--LFAKQHPEFNYLLVHVHHG 76

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG----LMAAAREARY-ALISEHAKT 116
           L   A     + S    R R     +S K     +G    L AAAREARY AL SE A  
Sbjct: 77  LSANADS---WQSHCERRAREYGLPISVKRVTVASGARISLEAAAREARYDALRSELAP- 132

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               +++TAH  DDQLET+ +  +R    KG+   G       D  L   RP L   R  
Sbjct: 133 --GDILLTAHHQDDQLETLLLALKRGLGPKGLAAMGEVQAFTPDNPLL--RPLLTSSRAQ 188

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
           I +F +   +S  ED SN D RF+R  +R  V  I
Sbjct: 189 IEAFAMAEGLSHIEDESNKDSRFDRNFLRNEVLPI 223


>gi|297520460|ref|ZP_06938846.1| tRNA(Ile)-lysidine synthetase [Escherichia coli OP50]
          Length = 286

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 9/189 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   V +
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +VC + ++   V   + ++   G+   AR+ RY   +     +   +++TA   DDQ 
Sbjct: 64  CENVCQQWQVPLVVERVQLAQEGLGIEVQARQVRYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R ++  + L   + W ED 
Sbjct: 122 ETFLLALKRGSGPAG--LSAMGEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDE 178

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 179 SNQDDSYDR 187


>gi|300857288|ref|YP_003782272.1| putative tRNA(Ile)-lysidine synthase [Clostridium ljungdahlii DSM
           13528]
 gi|300437403|gb|ADK17170.1| predicted tRNA(Ile)-lysidine synthase [Clostridium ljungdahlii DSM
           13528]
          Length = 468

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++VAVSGG DS+ LL  L+ +   R    I      V+HCLR + A  +  YV   C  L
Sbjct: 21  VIVAVSGGPDSICLLHILYVL---REKLDITLCVAHVNHCLRGKDADGDEEYVKKFCENL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +I        V+  + +      +A R+ RY+   +    + A  I  AH  +DQ ET+ 
Sbjct: 78  KIQFKSLKIDVNHVSQEEGISCESAGRKVRYSFFEKLKDELKAQKIAIAHNANDQAETIL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G GL G+        N+++ RP +   R++I  +    N++   D +N +
Sbjct: 138 MRIMR-----GAGLDGLVGIRPVRDNIYV-RPLICSTRDEIEKYCSLNNLNPRIDKTNLE 191

Query: 197 DRFERVRVR 205
             + R ++R
Sbjct: 192 TLYSRNKIR 200


>gi|294786616|ref|ZP_06751870.1| tRNA(Ile)-lysidine synthase [Parascardovia denticolens F0305]
 gi|315226203|ref|ZP_07867991.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Parascardovia denticolens DSM 10105]
 gi|294485449|gb|EFG33083.1| tRNA(Ile)-lysidine synthase [Parascardovia denticolens F0305]
 gi|315120335|gb|EFT83467.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Parascardovia denticolens DSM 10105]
          Length = 408

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 15/181 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ L      V +  S+G I+  A  +DH L+  +       ++ C +L 
Sbjct: 45  VLVACSGGRDSLALAYVARIVCA--SWG-IRCGAAIIDHQLQADSGQVADQTAEQCRKLG 101

Query: 82  IAHSVVSWKNSK-PQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV---Y 136
           +A  VV     K P   G+ AAAR+ RY  +++ A+   +  ++ AHTF DQ ETV    
Sbjct: 102 LAPVVVRKVQVKDPHGQGMEAAARQTRYQALTDLARHEGSRCLLLAHTFTDQAETVALGL 161

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNT 195
           +R     A  G+      D++L      I RPFL+   R+D  +      ++W +DP+N 
Sbjct: 162 LRHPDLRALAGIPARTEKDSVL------ILRPFLKAISRQDTEAICRAAGLAWWDDPANG 215

Query: 196 D 196
           +
Sbjct: 216 E 216


>gi|154248857|ref|YP_001409682.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154152793|gb|ABS60025.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 457

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 21/222 (9%)

Query: 12  FVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F+R  V   + +L+AVSGG DS+ +++ L +   D     I     + +H LR  A DEV
Sbjct: 27  FIREYVPNCSSVLLAVSGGVDSI-VMLDLFNRAKDELL--INIGVATFNHKLRTEADDEV 83

Query: 71  RYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +V   C  L I      + V     + +  +   AR  RY  +   AK    + I TAH
Sbjct: 84  IFVQKFCEGLGIPFFPGEADVKMYCEQNKLSIEEGARILRYEFLKRTAKENGYSFIATAH 143

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +D LET+ +R       KG G  G+    +  +N    RP +   R++I  +  +R +
Sbjct: 144 NANDLLETIILRQI-----KGTGPFGL--AAIKPINGIFIRPLIFFTRKEIEEYAKERKL 196

Query: 187 SWCEDPSNTDDRFERVRVRR----FVRDID--LHALYLKMKK 222
            +  D +N D  + R  VR      +++I+  + + YLK+ K
Sbjct: 197 EYVIDRTNFDIEYNRNFVRHKIVPLLKEINPSVESAYLKLAK 238


>gi|294790630|ref|ZP_06755788.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304]
 gi|294458527|gb|EFG26880.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304]
          Length = 474

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 8/178 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ L      V +  S G ++  A+ VDH L+  +    +  ++ C+   
Sbjct: 45  VLVACSGGRDSLALAYTAKIVCA--SLG-VRCGAVIVDHHLQTGSGLVAQKAAEQCTAYG 101

Query: 82  IAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +A  ++      + + GL + AR+AR+  +   A    A++ + AHT  DQ ET+  R  
Sbjct: 102 LAPVLIRRAQVHRTRAGLESDARDARFLQLISAAHDEAASVTLLAHTMSDQAETILFRFL 161

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ +     L+GM  T +    +  +RPFL+   R++     LQ  I W +DP+N D+
Sbjct: 162 RNPSI--TALAGM-QTFIRREGVLFARPFLQGLTRQETTDLCLQAGIQWWDDPTNADN 216


>gi|288921152|ref|ZP_06415440.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EUN1f]
 gi|288347461|gb|EFC81750.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EUN1f]
          Length = 591

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 95/207 (45%), Gaps = 17/207 (8%)

Query: 6   IESVRFFVRSLVYP----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           + +VR  VR  V      A +LVA SGG+DS+ L  A+  V   R+   ++   ++VDH 
Sbjct: 6   VAAVRLGVRDAVADLPPGALVLVACSGGADSLALAAAVAFVAPRRA---LRAGLLTVDHA 62

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
             + ++       DV ++ R     +    + P      AAR+ R   +   A+ ++A  
Sbjct: 63  WDDNSR---ARAEDVAAQGRALGLSLVEILAAPSPRSEGAARDERRKALLAAARRLDAQA 119

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +R  R    +   LSGM       L+  I RP L  RR+  R   
Sbjct: 120 VLLGHTLDDQAETVLLRLARGSGAR--SLSGMP-----ALDGLIRRPLLGLRRDQTRQAC 172

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
               + + EDP+N D  F R R R  V
Sbjct: 173 QFLGLPYWEDPTNADPAFARARTRSRV 199


>gi|293394728|ref|ZP_06639020.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera DSM 4582]
 gi|291422854|gb|EFE96091.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera DSM 4582]
          Length = 436

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 80/179 (44%), Gaps = 7/179 (3%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS  LL  L  +   R   +++  A+ V H L   A D V +    C+  ++
Sbjct: 21  LVAFSGGLDSSVLLHLLVQLRQRRP--ELQLRAVHVHHGLSALADDWVAHCQRQCANWQV 78

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V   +      GL AAAR ARY  +     +  A  ++TA   DDQ ET  +  +R 
Sbjct: 79  PLVVQYVQVESRDGGLEAAARTARYQALQRTLSSGEA--LLTAQHLDDQCETFLLALKRG 136

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               G+       T L D  L   RP L   R  +  +  ++ + W ED SN D RF+R
Sbjct: 137 SGPTGLAAMATHGT-LGDSPL--LRPLLGVSRRQLEQYAARQQLDWIEDDSNQDARFDR 192


>gi|169335539|ref|ZP_02862732.1| hypothetical protein ANASTE_01954 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258277|gb|EDS72243.1| hypothetical protein ANASTE_01954 [Anaerofustis stercorihominis DSM
           17244]
          Length = 464

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 16/192 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A+SGGSDS+ LL  L+++ +D  F      A  ++H +RE AK + ++V D+C    
Sbjct: 28  VMIALSGGSDSVCLLHILNTLKNDMGFS---LYAFHLNHNIREEAKRDEKFVLDLCKTYD 84

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   + S      +     GL    R+ RY LI++  K  +     TAH   D  E++ +
Sbjct: 85  VPLFLESEDMPALHEDSSLGLEEIGRKKRYELINKIMKENHIDKAATAHHLLDHSESMIL 144

Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              R    +G+ G+S   D I+        RP L   +E+I  ++ +  + +  D +N D
Sbjct: 145 NMVRGSGIRGLRGISVKNDNII--------RPILNLTKEEILCYIEENELEYVTDVTNFD 196

Query: 197 DRFERVRVRRFV 208
             + R  +R  +
Sbjct: 197 TDYSRNNIRHNI 208


>gi|224367622|ref|YP_002601785.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223690338|gb|ACN13621.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 362

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 19/201 (9%)

Query: 13  VRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE 69
           V  +V P   IL+ VSGG DS+ L IAL  VL  +  G I      ++H LR  E+ +DE
Sbjct: 20  VHGMVTPGDSILLGVSGGPDSVALAIAL--VLLRKDLG-ITLGIAHINHLLRDKESDRDE 76

Query: 70  VRYVSDVCSRLRIA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +V ++   L +  H +   V+    + Q  L   ARE RYA  ++  +    T     
Sbjct: 77  A-FVQELARSLELPFHPLKIDVATLARERQISLEETAREVRYAFFTDLCRHNGYTRTAVG 135

Query: 126 HTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           HT DD  E V M   R    +G+ G+  + D        WI RP +   + +I +FL ++
Sbjct: 136 HTLDDNAELVLMNLLRGSGPRGLAGIPPVRDH-------WIIRPLIGHTKGEILAFLREK 188

Query: 185 NISWCEDPSNTDDRFERVRVR 205
             ++  D +N +  F R R+R
Sbjct: 189 AQAYVVDSTNLETVFLRNRIR 209


>gi|171463663|ref|YP_001797776.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193201|gb|ACB44162.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 438

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 166/387 (42%), Gaps = 53/387 (13%)

Query: 22  ILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           I VA SGG DS+ LL  +  +   + S  + +  A  + H L+  A D + +   +  + 
Sbjct: 17  IAVAFSGGLDSVVLLDTVCKAHAKNLSQSQNQIFAFHIHHGLQRLADDWLIFCEKLAKKY 76

Query: 81  RIAHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +I     ++   NS+    + + AR  RY  +S+  +      ++ AH  +DQ ETV ++
Sbjct: 77  KIHFDFRLLHLDNSQGLGNVESRARAGRYEALSDLCEEYGIEDLLLAHHQNDQAETVLLQ 136

Query: 139 SQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
             R     G G++G+       D   ++  + + RP L   R+++ ++  +  + W EDP
Sbjct: 137 LLR-----GSGVAGLAGMPINRDMQRHNHRITLWRPLLNQSRQELEAYAKEHKLKWIEDP 191

Query: 193 SNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDL--------RVKVNNAVAMLIPK 240
           SN D ++ R  +R+ V      I   AL    +  Q L        R+   +A A++   
Sbjct: 192 SNQDTKYRRNALRKKVIPVLEKIQPEALVNIARSAQLLGEAQSLLNRLAQQDAKAIIYHD 251

Query: 241 YLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER------VMLF 293
            L      +IA++Q D+L  ++ L ++L     A+   +     +R + +       + +
Sbjct: 252 QLKA--EPLIALAQKDLLAANNVLRYWLQTQQLAMPSQERLKAWWRDLGKKIKADTKLEW 309

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN---LSD- 349
           L   +R C+  G + +       W+ +A+      + +P +   W    Q  N   L D 
Sbjct: 310 LHDERRICLWRGMLQVGNLEEGRWVLKALPPNSKQLGFPAD---WVKHAQENNQISLRDR 366

Query: 350 ---SLIQIGPQSYRK--------ADVP 365
                IQI P++ RK        ADVP
Sbjct: 367 RGSEKIQIKPKTPRKTLKNLFQEADVP 393


>gi|293977842|ref|YP_003543272.1| tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri DMIN]
 gi|292667773|gb|ADE35408.1| tRNA(Ile)-lysidine synthetase, N-terminal domain
           protein/tRNA(Ile)-lysidine synthetase, C-terminal domain
           protein [Candidatus Sulcia muelleri DMIN]
          Length = 436

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 24/207 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDV 76
           I V+VS G DSM LL  L  + +           I V HC      +++ KDE+ ++ + 
Sbjct: 22  IYVSVSSGLDSMVLLDVLIKICN---------FTICVIHCNFNLRGKDSDKDEL-FIQEF 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + +I     ++   K    +   AR+ RY              I   H  DD +ET +
Sbjct: 72  CLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCDYIALGHHLDDSIETFF 131

Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +   R    KG+ G++   + I+        RP     +++I S+  + NI W ED SN 
Sbjct: 132 INIIRGTGIKGLIGINNFKNKII--------RPLSFFSKKEIISYAQENNIKWREDNSNY 183

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKK 222
           D ++ R R+R F++ I  +  Y   KK
Sbjct: 184 DHKYLRNRIRFFLKPILDYKFYNGFKK 210


>gi|328354033|emb|CCA40430.1| hypothetical protein PP7435_Chr4-0255 [Pichia pastoris CBS 7435]
          Length = 517

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 17/202 (8%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           V+ F   L  P  + +++SGG DSM L   L     + + G ++  A++V+H  R+ ++ 
Sbjct: 14  VKIFPHGL--PRRVGISLSGGVDSMALTSLLSRYRDEYNVG-VEIVALTVNHEYRKGSRQ 70

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISEHAKTINATLI 122
           E   V  + + L + H ++  K +     L         AR  RY  I ++    +   +
Sbjct: 71  EAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQHL 130

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM----GLSGMCDTILYDLN----LWISRPFLRCRR 174
              H  +DQ+ET  +R +++    GM     +S      LY  +    + I RP L  R+
Sbjct: 131 FLGHQLEDQVETFLLRLKQNSTIFGMRCMKDISSYPSLPLYPSSVKPPIKIVRPMLNIRK 190

Query: 175 EDIRSFLLQRNISWCEDPSNTD 196
           +DI S+  +  + W ED +NTD
Sbjct: 191 KDIYSYCRELEVPWFEDHTNTD 212


>gi|237800161|ref|ZP_04588622.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023018|gb|EGI03075.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 445

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 79/178 (44%), Gaps = 8/178 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +   RS       AI V H L+  A     +   VC  L + 
Sbjct: 30  VGFSGGLDSTVLLHLLAELA--RSENLPALHAIHVHHGLQAAADAWPEHCRQVCQALGVP 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              VS K  +P   +  AAR+ARY   +E        +++ A   DDQ ET+  R  R  
Sbjct: 88  FEQVSVK-VEPGASVEQAARQARYKAFTEQLGA--GDVLLAAQHRDDQAETLLFRLMRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
             +G  L+ M D         + RP L   R ++ ++  Q  ++W EDPSN D +F R
Sbjct: 145 GVRG--LAAMPDQRALGRGH-LVRPLLVVSRIELEAYAHQHGLNWIEDPSNNDQQFSR 199


>gi|258405590|ref|YP_003198332.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257797817|gb|ACV68754.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 338

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 12/189 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+++AVSGG DS+ LL A  + + D+ +G   F A  +DH LR  +  E + V  +C +L
Sbjct: 34  HVMLAVSGGVDSVALL-AWAAAMRDK-WGARLFCA-HLDHGLRPESSQERQRVHALCDQL 90

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I      S       + Q G+  A R  RY  +   A       ++TAH  +D  E   
Sbjct: 91  AIPCFSGRSETRRYAQRCQLGIEEAGRLLRYRYLEGIAHRRGCDYLLTAHHANDLAEDSL 150

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G G   +     +D    + RPFL   +  + + +    + W ED SN D
Sbjct: 151 MRFIR-----GTGWPALAGMAAWDPGRRLLRPFLLTPKHRLHALVQAAGLCWEEDSSNRD 205

Query: 197 DRFERVRVR 205
             ++R R+R
Sbjct: 206 PAYQRNRIR 214


>gi|225551664|ref|ZP_03772608.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1]
 gi|225371691|gb|EEH01117.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1]
          Length = 440

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSNNVI------AFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +    +  K+   + G  +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GLSG+       +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLSGIP-----GVNRNIIRPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NI +  D +N  + + R RVR
Sbjct: 180 LSLNNIGFFVDSTNAQNLYLRNRVR 204


>gi|261338814|ref|ZP_05966672.1| hypothetical protein ENTCAN_05009 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318637|gb|EFC57575.1| tRNA(Ile)-lysidine synthetase [Enterobacter cancerogenus ATCC
           35316]
          Length = 428

 Score = 70.1 bits (170), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 83/182 (45%), Gaps = 9/182 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRS-FGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +LV  SGG DS    + LH ++  R     ++  AI V H L   A + V +   +C+ 
Sbjct: 15  QLLVGFSGGLDST---VLLHRLMHWRDREPDVQIRAIHVHHGLSPYADEWVAHCDALCAA 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   V          G+ A AR+ARYA  +   K   A  ++TA   DDQ ET  +  
Sbjct: 72  WGIPLHVERVVLENEGLGIEAQARKARYAAFARALKPGEA--LVTAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G  LS M +   +D    + RP L   R  + ++  Q  +SW ED SN DD +
Sbjct: 130 KRGSGPAG--LSAMPERTAFDGTE-LLRPLLGETRASLEAWAQQYQLSWIEDESNQDDSY 186

Query: 200 ER 201
           +R
Sbjct: 187 DR 188


>gi|296111610|ref|YP_003621992.1| cell cycle protein MesJ [Leuconostoc kimchii IMSNU 11154]
 gi|295833142|gb|ADG41023.1| cell cycle protein MesJ [Leuconostoc kimchii IMSNU 11154]
          Length = 435

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 13/175 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVSGG DS+ LL AL   L        K     V++ LRE +  +  +V  +  + +
Sbjct: 18  VIVAVSGGVDSVVLLHALRQQLP-----TAKLVIAHVNYHLREESDADEVFVRRLAEKYQ 72

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
               + +W +  P   + + AR+ RY    + A   +   I+ AH  DDQ ETV ++  R
Sbjct: 73  AVFEMTTWSDI-PSNSVESKARQLRYLFFEKLAYQYHTETIVVAHHADDQAETVLLKLVR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               +   L+GM        N  I+RPFL   ++++R +     ++W +D +N D
Sbjct: 132 --GGQVSQLAGMDSQ-----NSHITRPFLCITKQELRHYAQDNELTWRDDKTNAD 179


>gi|224824978|ref|ZP_03698084.1| tRNA(Ile)-lysidine synthetase [Lutiella nitroferrum 2002]
 gi|224602649|gb|EEG08826.1| tRNA(Ile)-lysidine synthetase [Lutiella nitroferrum 2002]
          Length = 447

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 13/216 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS+ LL  L  +  +R    +K SA+ V H L   A     +   +C    + 
Sbjct: 31  VGLSGGIDSVVLLDLLVRLCLERG---LKLSAVHVHHGLSPQADAWAEHCRQLCLEWGVP 87

Query: 84  --HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
                V  + S  ++ L A AR+ RY +  E     +A++++ AH  DDQ ETV ++  R
Sbjct: 88  LRSEAVKVEVSGGES-LEAVARQHRYRVYGES----SASVVVLAHHQDDQAETVLLQLLR 142

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG+       T+      W+ RP L   R +I ++   R + W ED SN D R+ R
Sbjct: 143 GAGPKGVA---AMPTLRRHAGRWLWRPLLAISRAEIEAYARWRQLVWVEDESNVDTRWRR 199

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +R  +  +   A+    +  Q   V + +A A+L
Sbjct: 200 NLLRHDILPLIESAIPHYRQHLQRAAVLMADASAVL 235


>gi|116871602|ref|YP_848383.1| hypothetical protein lwe0182 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740480|emb|CAK19600.1| conserved hypothetical/hypoxanthine phosphoribosyltransferase,
           fusion protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 648

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS  LL   H + S +   K   S   ++HCLRE A+ E   V   C    
Sbjct: 24  LLVAVSGGPDSFALL---HFLWSSKLVPKESISVAHLNHCLREGAEKEQLVVQTFCEEHH 80

Query: 82  I---AHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I     +V   K+++  Q G+   AR  RY    +     +   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFFVEAVDIKKHAETIQKGIEETARIVRYKFFEKVMTENDINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R      +G SG+           I RPFL   + +I  +  + ++ +  D SN   
Sbjct: 141 RLVR--GSSSIGWSGIQPKRKVTKGYAI-RPFLPITKAEIIQYASKHDLPYEIDESNVSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|260062776|ref|YP_003195856.1| putative cell-cycle protein [Robiginitalea biformata HTCC2501]
 gi|88784344|gb|EAR15514.1| putative cell-cycle protein [Robiginitalea biformata HTCC2501]
          Length = 439

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 20/193 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
            L+A SGG DSM     L  +  D     ++F     +  LR E ++ +  +V +   +L
Sbjct: 21  FLLACSGGLDSM----VLAHLCKD---AGLEFELAHCNFNLRGEASESDQEFVRETADKL 73

Query: 81  RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETV 135
           RI   + S+      ++ +  +  AAR  RY    +   + N    I+TAH  DD LET 
Sbjct: 74  RIKTHIKSFDTIGYANQNKVSIQMAARALRYEWFDQLTASENHLRYIVTAHHADDALETF 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G GL G+C       N  I RP L   RED+ ++     I+W ED SN+
Sbjct: 134 LINLGR-----GSGLEGLCGIPARTAN--IRRPLLAFSREDLEAYAETARIAWREDASNS 186

Query: 196 DDRFERVRVRRFV 208
           + R+ R R+R  V
Sbjct: 187 ETRYLRNRLRHEV 199


>gi|289626017|ref|ZP_06458971.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289651466|ref|ZP_06482809.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330868559|gb|EGH03268.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 445

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             AI V H L+  A     +   VC  L +A  +V   N  P   +  AAR+ARY   ++
Sbjct: 57  LHAIHVHHGLQAAANAWPEHCRQVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +     +++T    DDQ ET+  R  R    +G  L+ M D  +      + RP L  
Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRG--LAAMPDQRILGRGH-LVRPLLAV 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            R ++  +  Q  ++W EDPSN D RF R  +R  V
Sbjct: 171 SRVELEGYAYQHGLNWVEDPSNDDSRFSRNFLRSDV 206


>gi|289422484|ref|ZP_06424327.1| tRNA(Ile)-lysidine synthase [Peptostreptococcus anaerobius 653-L]
 gi|289157056|gb|EFD05678.1| tRNA(Ile)-lysidine synthase [Peptostreptococcus anaerobius 653-L]
          Length = 462

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           I+V +SGG DS+ LL  LH +    +   I+  A+ ++H +R   A  +  YVS +C +L
Sbjct: 22  IIVGLSGGPDSVCLLHVLHRLSLKMN---IRVYAVHLNHQIRGLDAHLDALYVSKLCHKL 78

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            IA  + S       S+   GL   AR  RY +  E    I A  I   H  +DQ ETV 
Sbjct: 79  GIACFIRSIDVPKYCSENGLGLEDGARNLRYMIFKEVKDRIGANKIAVGHNKNDQAETVI 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    K  GLSGM D +  D    + RP L   R DI S+    +++   D +N +
Sbjct: 139 MRIMRGTGIK--GLSGM-DYVRSD---GVIRPILDLDRSDIESYCKDHSLTPRIDSTNLE 192

Query: 197 DRFERVRVR 205
             + R ++R
Sbjct: 193 AIYSRNKIR 201


>gi|302690392|ref|XP_003034875.1| hypothetical protein SCHCODRAFT_29811 [Schizophyllum commune H4-8]
 gi|300108571|gb|EFI99972.1| hypothetical protein SCHCODRAFT_29811 [Schizophyllum commune H4-8]
          Length = 392

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 25/221 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI---SVDHCLRETAKDEVRYVSDVCS 78
           ++VA SGG DS  LL  LH     RS  + +   I   SVDH L+ ++   + + +   +
Sbjct: 17  LVVANSGGPDSTCLLFLLHRWA--RSLPESQSHRILSWSVDHNLQPSSAQWMSHTARFAA 74

Query: 79  RLRIAH--SVVSWKNS----KPQTG----LMAAAREARYALISEHAKTINATLIMTAHTF 128
           RL I H  + ++W +     KP +G    L  AARE RYAL+ +  ++  A +    H  
Sbjct: 75  RLNIRHLSAQIAWGDGGFPPKPTSGGKGKLELAAREVRYALLYDALRSAGAEVAAFGHHA 134

Query: 129 DDQLETVYMRSQRDYAEKGM---------GLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           DDQ+ET  +R+ +  +E G+         G+    +     L  WI RP L   ++ I +
Sbjct: 135 DDQVETAILRALKGSSELGLAGMKSCRRFGMGARGELGHEGLRKWIVRPLLPVSKDRILA 194

Query: 180 FLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLK 219
              +  + +  D +N       R  +R  V + D+  ++++
Sbjct: 195 TCDEHKLEYVVDSTNFQPELTLRNAIRNAVEERDVGPVFIQ 235


>gi|295134680|ref|YP_003585356.1| PP-loop family protein [Zunongwangia profunda SM-A87]
 gi|294982695|gb|ADF53160.1| PP-loop family protein [Zunongwangia profunda SM-A87]
          Length = 437

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 23/196 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-----VRYVS 74
           A +++AVSGG DSM L+     V       K+ F+    +  LR+   D      VR   
Sbjct: 19  AKLILAVSGGVDSMVLMRLCKKV-------KLDFAIAHCNFNLRDNESDGDEEFVVRAAQ 71

Query: 75  DVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           ++  ++ I H + +S+   + +  +  AARE RY    E     NA  I+ AH  +D LE
Sbjct: 72  NLELKVHIQHFNTISFA-EEHKLSIQMAARELRYHWFEELRIAENADYILVAHHANDSLE 130

Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T  +   R    +G+ G+    D IL        RP L+  R++I ++     I W ED 
Sbjct: 131 TFLINFVRSTGPEGLAGIKAENDKIL--------RPLLKFSRQEIENYARDHQILWREDS 182

Query: 193 SNTDDRFERVRVRRFV 208
           SN   ++ R ++R  V
Sbjct: 183 SNASTKYLRNKIRHQV 198


>gi|117617562|ref|YP_855748.1| tRNA(Ile)-lysidine synthetase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558969|gb|ABK35917.1| tRNA(Ile)-lysidine synthetase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 446

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 16/201 (7%)

Query: 12  FVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           F ++L  P     +LVA SGG DS  LL+       ++    +   A+ V H L   A +
Sbjct: 9   FCQTLPAPEGSRGLLVAFSGGLDSTVLLVLAAQFAREQG---LVLRALHVHHGLSPNADE 65

Query: 69  EVRYVSDVCSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            V +   VC +L +      V   ++S     L A AREARY  ++  A+      ++TA
Sbjct: 66  WVAHCETVCQQLAVPLLVERVQLQRDSG--DSLEAQAREARYLCLA--AQLGEGEWLLTA 121

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQLET+ +  +R    +G  L+GM  +  +   L + RP L   R ++        
Sbjct: 122 HHQDDQLETLLLALKRGAGLRG--LAGMVPSQPFAGGL-LLRPLLEVSRTELADAAASLP 178

Query: 186 ISWCEDPSNTDDRFERVRVRR 206
             W ED SN D+ ++R  +R+
Sbjct: 179 YGWVEDESNQDESYDRNFLRQ 199


>gi|78043578|ref|YP_359085.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995693|gb|ABB14592.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 449

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 13/194 (6%)

Query: 15  SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72
            ++ P   ++V VSGG DSM LL  L     +  F       + V+H LR    D +   
Sbjct: 16  QMINPGEKVVVGVSGGPDSMALLFCLLKYREEVDFS---LEVVHVNHGLRGRESDLDEEL 72

Query: 73  VSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           V D   +  I   V    + K  +  L A AR+ RY    E  +   A  I  AHT  D 
Sbjct: 73  VLDFTRKYGINFHVKKLDDLKDLRENLQAVARQKRYEFFYEVLEKTGADKIALAHTASDV 132

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV M   R     G G  G+C   ++ +   I RP     R ++ SF+ ++NI +  D
Sbjct: 133 AETVMMNILR-----GAGTEGLCG--IWPVRDRIIRPLYTVFRREVMSFVERKNIPYRVD 185

Query: 192 PSNTDDRFERVRVR 205
            SN   ++ R +VR
Sbjct: 186 SSNLVPKYLRNKVR 199


>gi|254786815|ref|YP_003074244.1| tRNA(Ile)-lysidine synthase domain containing protein
           [Teredinibacter turnerae T7901]
 gi|237683861|gb|ACR11125.1| tRNA(Ile)-lysidine synthase domain containing protein
           [Teredinibacter turnerae T7901]
          Length = 436

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS    + LH        G     A+ V+H L   A+   R+  D  + L 
Sbjct: 20  VWIAFSGGLDST---VLLHQAAQ---LGLEHLQAVHVNHQLSPNAQAWQRHCEDTANSLG 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  +V +        G+  AAR+ RY + SE  K     +++TAH  +DQ ET+  R  R
Sbjct: 74  VPLTVRTVSVDDFGGGVEDAARKLRYQIFSELLKP--GEILLTAHHANDQAETLIYRLMR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                G GL G+C  +    NL     + RPFL   R  + ++     + W +D SN D 
Sbjct: 132 -----GAGLKGLC-GVPRSRNLGRRKTLVRPFLDVARPQLEAWADDHAVRWIKDESNDDT 185

Query: 198 RFERVRVRRFV 208
            F+R  +R  V
Sbjct: 186 SFDRNYIRHEV 196


>gi|294783791|ref|ZP_06749115.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 1_1_41FAA]
 gi|294480669|gb|EFG28446.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 1_1_41FAA]
          Length = 452

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 85/189 (44%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   ++F K K   + ++H LR E A  +  +  D   R 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---QNFFKFKIYLVHINHLLRGEDADADESFSYDYAKRN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    +TG  L    RE RY   SE    + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFVKRIPVKEIAKKTGKTLEEVGREERYNFFSEIYNKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G  L G+    L   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLVR-----GTSLQGLEGIKLKYSN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|167648379|ref|YP_001686042.1| tRNA(Ile)-lysidine synthetase [Caulobacter sp. K31]
 gi|167350809|gb|ABZ73544.1| tRNA(Ile)-lysidine synthetase [Caulobacter sp. K31]
          Length = 455

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 18/190 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS+ LLI        R+ G+   S ++VDH L   +             L   
Sbjct: 24  VGFSGGGDSLALLILARDWA--RAHGRAVLS-LTVDHQLNPDSAAWTAAAVARAQALGAQ 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ--- 140
              ++W   KP  GL AAAR AR+AL+++ A+   A +++  HT DD  E   MR++   
Sbjct: 81  ARALAWTGDKPSIGLPAAARAARHALLADAAREAGARVLLLGHTADDIAEAAAMRAEGST 140

Query: 141 ----RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               RD++       G          +++ RP L   R +IR +L  R  +W +DP+N D
Sbjct: 141 VSDPRDWSPSPAWPEGR--------GVFVLRPLLEVGRGEIREWLSARGETWLDDPANDD 192

Query: 197 DRFERVRVRR 206
             + R R R+
Sbjct: 193 LNYARARARQ 202


>gi|89898057|ref|YP_515167.1| PP-loop superfamily ATPase [Chlamydophila felis Fe/C-56]
 gi|123483693|sp|Q255L6|TILS_CHLFF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|89331429|dbj|BAE81022.1| PP-loop superfamily ATPase [Chlamydophila felis Fe/C-56]
          Length = 317

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 90/198 (45%), Gaps = 17/198 (8%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL      L+A+SGGSDS+ LL  L S         + F A+ VD+  RE++  E  
Sbjct: 15  FFSSLDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFIAVHVDYGWRESSYREAE 67

Query: 72  YVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            +   C      + + H    ++ S+ Q     AAR  RYAL  +  +  N + I  AH 
Sbjct: 68  ELELRCQAEGVPIIVDHVPPEYRTSRDQEN---AARRYRYALFHKVCQKKNLSGIFLAHH 124

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ ETV  R           L GM   + Y+  + I RP L   +  +   L   NI 
Sbjct: 125 ANDQAETVLKRVLE--GAHLSNLKGMRGEVYYE-GIPILRPLLHIPKIVLSRTLDAANIH 181

Query: 188 WCEDPSNTDDRFERVRVR 205
           +  D +NTD+R+ R R+R
Sbjct: 182 YVHDITNTDERYLRARMR 199


>gi|303290410|ref|XP_003064492.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454090|gb|EEH51397.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 203

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++  VSGG DS+ LL  L   LSD     +    +  +H  R  +++E  +V ++C RL 
Sbjct: 21  VVACVSGGPDSVALLHLLRE-LSDE--WNLAVHVLHCNHGKRSASEEEETFVVEMCERLG 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V   +     +     ARE R       A+ ++A +I+ AH +DDQ+ET+ ++  R
Sbjct: 78  VDVHVRRPEAPWGSSHFQERAREWRRKEARALARDVDARVILQAHHWDDQVETILLKILR 137

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  LS +   ++Y +N  + RP L CR++++  +L  R +    D SN D  F R
Sbjct: 138 -----GCHLSNI-KGMMY-VNGDVGRPLLDCRKDELVRYLRARGVDSRVDESNDDATFSR 190

Query: 202 VRVR 205
            ++R
Sbjct: 191 NKIR 194


>gi|162455575|ref|YP_001617942.1| hypothetical protein sce7293 [Sorangium cellulosum 'So ce 56']
 gi|161166157|emb|CAN97462.1| hypothetical protein sce7293 [Sorangium cellulosum 'So ce 56']
          Length = 321

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 18/199 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L A SGG DS  LL  L   L  R  G  +  A  VDH LR  A  E+    D+  +L 
Sbjct: 21  VLCACSGGPDSTALLHVLS--LLRRRIGH-EVVAHGVDHGLRAAAAAELAIARDLSEQLG 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + ++  +  +  P   L A AR AR+A ++  A    A  I T HT DD+ ETV +R  R
Sbjct: 78  VPYAE-TRVDVAPGANLQARARAARFAALAAAAAAHGARAIATGHTADDRAETVLLRLLR 136

Query: 142 DYAEKGM-----------GLSGM-CDTILYD--LNLWISRPFLRCRREDIRSFLLQRNIS 187
               +G+           G++G  C  +      ++ + RP L+ RR D+ + L +  ++
Sbjct: 137 GAGPRGLAVLPPRAPLPSGVAGAACGGVEPGSAASIELIRPLLQARRADVLAHLGRHRLA 196

Query: 188 WCEDPSNTDDRFERVRVRR 206
           + EDPSN D RF RVRVRR
Sbjct: 197 FAEDPSNRDPRFTRVRVRR 215


>gi|149907536|ref|ZP_01896283.1| tRNA(Ile)-lysidine synthetase [Moritella sp. PE36]
 gi|149809206|gb|EDM69135.1| tRNA(Ile)-lysidine synthetase [Moritella sp. PE36]
          Length = 474

 Score = 69.7 bits (169), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 13/195 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I++A SGG DS  LL  L      + + +  + A+ V H L + A   + +     +
Sbjct: 25  PMQIVLAYSGGLDSHVLLHLL--ARYQQRYPQHAYLAVHVHHGLSDNADTWLDHCQQTAA 82

Query: 79  RLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            L I   A  VV   N   +  L A AR ARY  I++H    + +L++     DDQLET 
Sbjct: 83  ALGINFIAEKVV--LNVGSRESLEAQARTARYQAIAKHLN--DGSLLLLGQHLDDQLETF 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++ +R    KG  LS M   + + L  N  I RP L   ++ +  +  Q  +SW ED S
Sbjct: 139 LLQLKRGAGVKG--LSAMAAQMPFSLQANCQIVRPLLIHPQQALVDYASQAQLSWVEDES 196

Query: 194 NTDDRFERVRVRRFV 208
           N +  ++R  +R  +
Sbjct: 197 NNNQSYDRNFLRHQI 211


>gi|332530123|ref|ZP_08406072.1| tRNA(Ile)-lysidine synthetase [Hylemonella gracilis ATCC 19624]
 gi|332040393|gb|EGI76770.1| tRNA(Ile)-lysidine synthetase [Hylemonella gracilis ATCC 19624]
          Length = 313

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 87/191 (45%), Gaps = 22/191 (11%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG+DS  LL+A     ++R  G+++  A+ V H L+  A      V   C  L I 
Sbjct: 1   MACSGGADSTALLLAC----AERWPGQVQ--ALHVHHGLQAAADGFEAQVRATCEPLNI- 53

Query: 84  HSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
             + +W+      P      AAR ARYA ++E A       +  A   DDQ+ET+ +   
Sbjct: 54  -PLHTWRVDARHAPGQSPEDAARGARYAALTEAALMAGVRDVALAQHADDQVETLLLALS 112

Query: 141 RDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNI----SWCEDPSN 194
           R     G GL G+           L   RP L     ++R +L  R +     W +DPSN
Sbjct: 113 R-----GAGLPGLASMPQAWERGGLRWHRPLLDVPGAELRVWLEARGLRAGAGWVDDPSN 167

Query: 195 TDDRFERVRVR 205
            D+R+ R R+R
Sbjct: 168 ADERYTRNRIR 178


>gi|330950662|gb|EGH50922.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae Cit 7]
          Length = 394

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    +   +  +AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELAGRETLPAL--NAIHVHHGLQTAADAWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     +P   L  AAR+ARY   +E  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVR-VQVEPAASLEQAARQARYGAFTERLR--EGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R  +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPDQRVLGRGH-LLRPLLDVSRMQLEDYARRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRNQV 206


>gi|302871264|ref|YP_003839900.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574123|gb|ADL41914.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 456

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+  SGG DSM LL  ++ +  + S   +  +   ++H LR  A D+ ++V ++C R  
Sbjct: 23  VLIGCSGGVDSMVLLDCMYRLKDEYS---LDITVAHLNHMLRPEADDDEKFVIEMCKRYN 79

Query: 82  IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I      V     K + GL    A R ARY+   E AK I+   I   H  +D +ET ++
Sbjct: 80  IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAKEISIDRIFLGHNKNDVVETFFL 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G  L G+    +  +   I+RP +   RE+I  F    NI +  D +N   
Sbjct: 140 NLFR-----GSSLEGLAS--IPPVRDIIARPLINISREEIEEFARVNNIPFVVDKTNYSL 192

Query: 198 RFERVRVR 205
           +++R  VR
Sbjct: 193 KYKRNIVR 200


>gi|260592846|ref|ZP_05858304.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319]
 gi|260535216|gb|EEX17833.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319]
          Length = 461

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 21/192 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77
           AH LVA+SGG+DS+ LL+ +      R  G  +  A+  +  LR  E+ +DE  Y   +C
Sbjct: 19  AHCLVALSGGADSVALLLTM------RQLG-YETDAVHCNFHLRGDESNRDE-EYCQSLC 70

Query: 78  SR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +    L IAH          +  +  AARE RY    +  + + A  I   H  +D +E
Sbjct: 71  KQLNIPLHIAHFDTLTYAEAHKVSIEMAARELRYRYFFQLKEALGADAICVGHHQEDSVE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G GLSGM    +      I RP L   R++I  +L Q+ IS+  D +
Sbjct: 131 TILINLVR-----GTGLSGMLG--IRPKKGDIVRPLLCVSRKEIEEYLHQQAISYVTDST 183

Query: 194 NTDDRFERVRVR 205
           N  D   R ++R
Sbjct: 184 NLVDDVVRNKLR 195


>gi|210613792|ref|ZP_03289906.1| hypothetical protein CLONEX_02117 [Clostridium nexile DSM 1787]
 gi|210151001|gb|EEA82009.1| hypothetical protein CLONEX_02117 [Clostridium nexile DSM 1787]
          Length = 476

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 17/193 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           I+V VSGG+DS+ LL  L  +  +  F   +   + V+H LR  +   DE+ YV  +C +
Sbjct: 24  IIVGVSGGADSICLLFVLIQLQKEIPF---ELVCVHVNHGLRGIDADADEM-YVKKMCEK 79

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                 I    V+    K +  L  A RE R     +  K    T I  AH  +D  ET 
Sbjct: 80  HCVPCEIYREDVALIAKKRKQSLEEAGREVRREAFVKTLKRYGGTKIALAHHQNDNAETF 139

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            M   R     G GL G+    +  +N  + RP L   R ++  +L +  I++C D +N 
Sbjct: 140 LMNVAR-----GAGLKGLGG--IRPVNGNVIRPLLAVERGEVEKYLEEEGIAFCVDETNK 192

Query: 196 DDRFERVRVRRFV 208
            D + R R+R  +
Sbjct: 193 SDAYMRNRIRNHI 205


>gi|253700218|ref|YP_003021407.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M21]
 gi|251775068|gb|ACT17649.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M21]
          Length = 457

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 32/197 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE---------- 69
           ++VAVSGG+DS+ LL      L  R    +      ++HCLR  E+  DE          
Sbjct: 20  VVVAVSGGADSVALLD-----LMTRLECGLHLVVAHLNHCLRGAESDADEAFVASLAGNY 74

Query: 70  -VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            + +VS  C    +A         + +  L  A R ARY  + + A    A+ I  AH  
Sbjct: 75  HLPFVSQSCDVADLAR--------RERLSLEDAGRRARYGFLEQTAAQFGASSIALAHHQ 126

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV +R  R     G GL+ M  T    L     RP L+  R  +  +L QR +++
Sbjct: 127 DDQAETVLIRLLR--GSGGTGLAAMAGTSGERLK----RPLLQVSRAKLEQYLKQRGLTF 180

Query: 189 CEDPSNTDDRFERVRVR 205
             D +N D    R  +R
Sbjct: 181 RTDSTNADTAILRNSIR 197


>gi|261855736|ref|YP_003263019.1| tRNA(Ile)-lysidine synthetase [Halothiobacillus neapolitanus c2]
 gi|261836205|gb|ACX95972.1| tRNA(Ile)-lysidine synthetase [Halothiobacillus neapolitanus c2]
          Length = 444

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 19/202 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           SL  P  +++A SGG+DS+G L+ LH+        +I  + +S+DH   +   D   + +
Sbjct: 9   SLPKPLKVVLASSGGADSLGALVWLHNQYQQGVIDEI--TVVSIDH---QIHPDSAEWSA 63

Query: 75  DVCSRLRI----AHSV---VSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIM 123
             C +       +H +   V  +    Q  L + AR ARY    + +    +  +  +++
Sbjct: 64  RACQQASFFSIESHCIKIDVPTRGIHGQHSLESRARWARYEALRSWLYRRYQPEDEPVLV 123

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  +DQ+ET  + + R       GLS M     +    W  RPFL+  R+D+R F   
Sbjct: 124 TAHHLEDQVETFLLAALR--GSGAAGLSAMPALTRFGAG-WHWRPFLQMPRDDLRQFAAS 180

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
             +   +DPSN D  ++R  +R
Sbjct: 181 LPLIPVDDPSNQDLSYDRNYLR 202


>gi|289433574|ref|YP_003463446.1| hypothetical protein lse_0205 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169818|emb|CBH26356.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 648

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 10/191 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H +       K   S   ++H LRE A  E   V + C + +
Sbjct: 24  LLVAVSGGPDSLALL---HFLQMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYCEKHK 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    V  +    Q G+   AR ARY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R      +G SG+           I RPFL   + +I  +  +  +++  D SN+  
Sbjct: 141 RLVR--GSSSIGWSGIQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDESNSSP 197

Query: 198 RFERVRVRRFV 208
           ++ R R R+ +
Sbjct: 198 KYTRNRYRKEI 208


>gi|87118609|ref|ZP_01074508.1| cell cycle protein [Marinomonas sp. MED121]
 gi|86166243|gb|EAQ67509.1| cell cycle protein [Marinomonas sp. MED121]
          Length = 434

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 10/185 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + +SGG DS+ LL     +L +   G  +  AI + H L + A    R+   +C + +
Sbjct: 27  IYLGLSGGVDSVALL----HLLVEAGLGH-RVKAIHIHHGLSQNADAWYRFCEALCQQYQ 81

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +A      +    +  +  AAR ARY + + +    NA L++ AH   DQ ET+  R  R
Sbjct: 82  VAFKGHKVELDTQKHSIEEAARIARYDIFASYLNK-NAYLLL-AHHAGDQAETLMFRLLR 139

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G GL+GM           + RP L   + ++  ++ Q  ++W ED SN D+ F R
Sbjct: 140 --GTGGKGLAGMPAKRELGAGF-LYRPLLSFDKTNLIQYVKQNGLTWVEDESNQDEAFSR 196

Query: 202 VRVRR 206
             +R 
Sbjct: 197 NHIRH 201


>gi|312134561|ref|YP_004001899.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774612|gb|ADQ04099.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL]
          Length = 456

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+  SGG DSM LL  ++ +  + +   +  +   ++H LR  A ++ ++V ++C R  
Sbjct: 23  VLIGCSGGVDSMVLLDCMYRLKDEYN---LDITVAHLNHMLRPEADEDEKFVIEMCKRYN 79

Query: 82  IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I      V     K + GL    A R ARY+   E AK I+   I+  H  +D +ET ++
Sbjct: 80  IKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAKEISIDRILLGHNKNDVVETFFL 139

Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              R     G  L G+  T  + D+   I+RP +   RE+I  F    NI +  D +N  
Sbjct: 140 NLFR-----GSSLKGLASTPPVRDI---IARPLINISREEIEEFARVNNIPFVVDKTNYS 191

Query: 197 DRFERVRVR 205
            +++R  VR
Sbjct: 192 LKYKRNIVR 200


>gi|331087219|ref|ZP_08336289.1| hypothetical protein HMPREF0987_02592 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408905|gb|EGG88366.1| hypothetical protein HMPREF0987_02592 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 505

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 90/208 (43%), Gaps = 19/208 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           I+  R F R       ++  +SGG+DS+ L   LH +  +     +K  A+ V+H +R E
Sbjct: 26  IQEHRMFERGET----VITGISGGADSVCLFFILHYLQEELG---VKLVAVHVNHGIRGE 78

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            A  + R+V ++C    I   +V         K +  +  A R  R       A+   A 
Sbjct: 79  DADADERFVQNICKTAGIPLEIVRCNLELIAKKRKQSMEEAGRNIRREAFERAAQKYGAA 138

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I  AH  +D  ET+ M   R     G GL+GM  T +  +     RP L   R +I  F
Sbjct: 139 KIALAHHKNDNAETLLMNLVR-----GTGLNGM--TGIKPVRDRYVRPLLCLERREIEGF 191

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
           L Q  I +  D +N  + + R ++R  V
Sbjct: 192 LEQNGIRYQTDQTNLTEDYTRNKIRNRV 219


>gi|284051178|ref|ZP_06381388.1| tRNA(Ile)-lysidine synthetase [Arthrospira platensis str. Paraca]
          Length = 348

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM L+  L  +      GK  +  +++ HC  +  +D V   +D    L 
Sbjct: 34  LLVAVSGGQDSMCLIRLLLDLQ-----GKWNWR-MAIAHCDHQWRRDSVAN-ADYIEELG 86

Query: 82  IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
               V  ++ + PQ     AAARE RY ++ E A+T N   ++T HT  D+ ET+     
Sbjct: 87  KIWQVPCYRLTAPQIPKTEAAAREWRYQVLGEIAQTDNYGYVVTGHTKSDRAETLLYNLI 146

Query: 141 RDYAEKGMGLSGMCDTIL--------YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           R     G G  G+   +          +    + RP L   R++   F  QR++   ED 
Sbjct: 147 R-----GSGADGLTSLVWSRPIFGRETETKPILVRPLLEITRQETGEFCQQRDLQIWEDS 201

Query: 193 SNTDDRFERVRVR 205
           +NTD  + R R+R
Sbjct: 202 TNTDVSYARNRIR 214


>gi|300704459|ref|YP_003746062.1| tRNA(ile)-lysidine synthase [Ralstonia solanacearum CFBP2957]
 gi|299072123|emb|CBJ43455.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum CFBP2957]
          Length = 462

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 19/216 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           + +   FV S   P  + VA+SGG DS  LL A  +   D +   ++  A+ V H L+  
Sbjct: 11  VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAT-AAWRDAAGAPVRLVALHVHHGLQAD 68

Query: 64  ----ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
               E A   +    DV   +R  H  V         G+  AAREARYA +        A
Sbjct: 69  ADAWEAACVRMAAAVDVECHVRRVHVSV-----DAGRGVEEAAREARYAALDALCAETGA 123

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIR 178
           TL++TAH  DDQ ETV ++  R     G GL G+    +  L    + RP+L   R DI 
Sbjct: 124 TLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMERLGGATLLRPWLDVPRSDIE 178

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           +++    ++W +DPSN D R+ R  +R  +  +  H
Sbjct: 179 AYVRTHALAWVDDPSNDDARYARNALRPLLAGMAGH 214


>gi|146299894|ref|YP_001194485.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
 gi|146154312|gb|ABQ05166.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
          Length = 436

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 27/194 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           + +AVSGG DSM LL           F ++ +  I+V HC   LR  E+  D+  ++ + 
Sbjct: 21  LFLAVSGGLDSMVLL---------HLFKQLNYE-ITVLHCNFQLRGLESFGDQ-EFIQNY 69

Query: 77  CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C +  I      +         +  +  AARE RY+   E  +  +   ++TAH  DD L
Sbjct: 70  CDKNNIKIFTTQFDTQAFAEDYKLSIQVAARELRYSWFYELLEEKHFDYLLTAHHADDNL 129

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +   R     G GL G+  T + + N  I RP L   RE+I  +  + NI W ED 
Sbjct: 130 ETFIINLTR-----GTGLDGL--TGIPEQNDKIIRPLLPFSREEILKYAQENNIEWREDS 182

Query: 193 SNTDDRFERVRVRR 206
           SN   ++ R ++R 
Sbjct: 183 SNASTKYVRNKIRH 196


>gi|291565670|dbj|BAI87942.1| tRNA(Ile)-lysidine synthase [Arthrospira platensis NIES-39]
          Length = 345

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM L+  L  +      GK  +  +++ HC  +  +D V   +D    L 
Sbjct: 31  LLVAVSGGQDSMCLIRLLLDLQ-----GKWNWR-MAIAHCDHQWRRDSVAN-ADYIEELG 83

Query: 82  IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
               V  ++ + PQ     AAARE RY ++ E A+T N   ++T HT  D+ ET+     
Sbjct: 84  KIWQVPCYRLTAPQIPKTEAAAREWRYQVLGEIAQTDNYGYVVTGHTKSDRAETLLYNLI 143

Query: 141 RDYAEKGMGLSGMCDTIL--------YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           R     G G  G+   +          +    + RP L   R++   F  QR++   ED 
Sbjct: 144 R-----GSGADGLTSLVWSRPIFGRETETKPILVRPLLEITRQETGEFCQQRDLQIWEDS 198

Query: 193 SNTDDRFERVRVR 205
           +NTD  + R R+R
Sbjct: 199 TNTDVSYARNRIR 211


>gi|317968353|ref|ZP_07969743.1| MesJ-like protein [Synechococcus sp. CB0205]
          Length = 327

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 23/203 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM L+  L+ +   +            +H  R  A+ + R +        
Sbjct: 29  LLLAVSGGQDSMALVGLLNDL---KRLHHWPLQLWHGNHGWRPEAEQQARELQAWAQDQG 85

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V  W++ K      A+AR+ RY  +  HA+ +    ++T HT  D+ ETV ++  R
Sbjct: 86  LPIQVDDWESPKRDE---ASARDWRYGQLQTHAQRLGCRRVVTGHTASDRSETVLLQLAR 142

Query: 142 DYAEKGMG-------LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
               +G+        LSG  + +         RP L   R D      Q  +    DPSN
Sbjct: 143 GSHRRGLSSLRQRRTLSGTIELV---------RPLLGFSRSDTVQLCEQLGLPIWLDPSN 193

Query: 195 TDDRFERVRVRRFVRDIDLHALY 217
           +D RF R R+R  V  + L AL+
Sbjct: 194 SDPRFSRNRIRHEVLPV-LEALH 215


>gi|237739225|ref|ZP_04569706.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 2_1_31]
 gi|229422833|gb|EEO37880.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 2_1_31]
          Length = 452

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   + F K K   + ++H LR E A  +  +  D   R 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---QDFFKFKIYLVHINHLLRGEDADADESFSYDYAKRN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    +TG  L    RE RY   SE    + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFVKRIPVKEIAKKTGKTLEEVGREERYNFFSEIYDKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G  L G+    L   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLVR-----GTSLQGLEGIKLKYNN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|148549375|ref|YP_001269477.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida F1]
 gi|148513433|gb|ABQ80293.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida F1]
          Length = 427

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 83/193 (43%), Gaps = 24/193 (12%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS----R 79
           VA SGG DS  LL  L      R+       AI + H L+  A     +   +C      
Sbjct: 15  VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L++ H  VS     P   L  AAREARYA   +        ++ T    DDQ ET+  R 
Sbjct: 73  LQVIHVQVS-----PGASLEQAAREARYAAFRQVLGP--GDILFTGQHRDDQAETLLFRL 125

Query: 140 QRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R     G GL G+        L   +L   RP L C R+ ++ +   + ++W EDPSN 
Sbjct: 126 LR-----GAGLRGLAAMPGQRALGQGSL--VRPLLACSRQHLQDYAQAQGLTWIEDPSNV 178

Query: 196 DDRFERVRVRRFV 208
           D +F R  +R  V
Sbjct: 179 DTQFARNYLRGEV 191


>gi|330894611|gb|EGH27272.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 445

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             AI V H L+  A     +   VC  L +A  +V   N  P   +  AAR+ARY   ++
Sbjct: 57  LHAIHVHHGLQAAANAWPEHCRQVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +     +++T    DDQ ET+  R  R    +G  L+ M D  +      + RP L  
Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRG--LAAMPDQRILGRGH-LVRPLLAV 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            R ++  +  Q  ++W EDPSN D RF R  +R  V
Sbjct: 171 SRVELEGYAHQHGLNWVEDPSNDDSRFSRNFLRSDV 206


>gi|83588977|ref|YP_428986.1| tRNA(Ile)-lysidine synthetase-like [Moorella thermoacetica ATCC
           39073]
 gi|83571891|gb|ABC18443.1| tRNA(Ile)-lysidine synthetase-like protein [Moorella thermoacetica
           ATCC 39073]
          Length = 455

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 14/194 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           LV    ++V VSGG DS+ LL   HS+++ +           ++H LR  A  +  YV D
Sbjct: 15  LVPGDKVVVGVSGGPDSLALL---HSLMTLQEEYGYTLQVAHLNHGLRPEAAADAEYVRD 71

Query: 76  VCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           + +     + +A   V     +    + AAARE RY    E A  + AT I   H  +DQ
Sbjct: 72  LATGWGLPVTVAQRDVLAYRQEHHLSIEAAAREVRYNFFQEVAAAVGATRIAVGHQAEDQ 131

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +   R     G GL+G+   +     L   RP L   R +I ++     +    D
Sbjct: 132 AETVLLNLLR-----GSGLTGLKAMLPRRGRL--IRPLLFVTRAEIEAYCRDNGLHPRRD 184

Query: 192 PSNTDDRFERVRVR 205
            +N D  + R ++R
Sbjct: 185 FTNEDPAYRRNKIR 198


>gi|56477787|ref|YP_159376.1| ATPase [Aromatoleum aromaticum EbN1]
 gi|61216414|sp|Q5P2I9|TILS_AZOSE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56313830|emb|CAI08475.1| tRNA(Ile)-lysidine synthetase [Aromatoleum aromaticum EbN1]
          Length = 423

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 80/189 (42%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG+DS  LL   H +   R        A  V H L   A   + + +  C+ L 
Sbjct: 13  LCVAFSGGADSTTLL---HLLARLRPRFGFDLCAAHVHHALSPNADAWLDFCARQCAALD 69

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +A H            GL AAARE R+A +S     +    ++  H  DDQ ET+  R  
Sbjct: 70  VAFHPFREQVARDHPAGLEAAAREVRHAALSR----VTCDWLVFGHHQDDQAETLLFRLL 125

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R     G G+ G       +       RP L  RR DIR+F    ++ W ED SN D R 
Sbjct: 126 R-----GAGVRGAAAMAAIEPGFPGRLRPLLGVRRADIRAFAQAASLEWIEDESNADPRH 180

Query: 200 ERVRVRRFV 208
            R  +R  V
Sbjct: 181 ARNFLRHHV 189


>gi|325106138|ref|YP_004275792.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145]
 gi|324974986|gb|ADY53970.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145]
          Length = 449

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           IL+A SGG DSM ++   H          +     ++ HC   LR  E+ +DE+ +V + 
Sbjct: 24  ILLATSGGRDSMAMVYLFH----------LSGFKTAIAHCNFNLRGEESVRDEI-FVKNT 72

Query: 77  CSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +L     IAH   +    + +  +  AAR+ RY    +         I  AH  +D +
Sbjct: 73  ALKLNTPIHIAHFDTTNYAEEHKISIQMAARDLRYDFFEDLCAEFKYQKIAVAHHHNDSI 132

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +   R     G G++G+   I +  N  I RP L   RE+I  F+ ++ I + ED 
Sbjct: 133 ETVLLNLIR-----GTGIAGL-HGIKHSKNTII-RPLLCFTREEIDQFVSEQKIDFVEDS 185

Query: 193 SNTDDRFERVRVR 205
           SN  D++ R ++R
Sbjct: 186 SNASDKYARNKIR 198


>gi|161833732|ref|YP_001597928.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           GWSS]
 gi|152206222|gb|ABS30532.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           GWSS]
          Length = 436

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 22/206 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDV 76
           I V+VS G DSM LL  L  + +           I V HC      +++ KDE+ ++ + 
Sbjct: 22  IYVSVSSGLDSMVLLDVLIKICN---------FTICVIHCNFNLRGKDSDKDEL-FIQEF 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + +I     ++   K    +   AR+ RY              I   H  DD +ET +
Sbjct: 72  CLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCDYIALGHHLDDSIETFF 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G+ G+    + +    I RP     +++I S+  + NI W ED SN D
Sbjct: 132 INLIR-----GTGIKGLIG--INNFKKKIIRPLSFFSKKEIISYAQENNIKWREDNSNYD 184

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK 222
            ++ R R+R F++ I  +  Y   KK
Sbjct: 185 HKYLRNRIRFFLKPILDYKFYNGFKK 210


>gi|158520085|ref|YP_001527955.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3]
 gi|158508911|gb|ABW65878.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3]
          Length = 480

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 17/202 (8%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71
            +++ P   +LV VSGG DS+ LL AL  +  + +  ++  S   V H LR    D +  
Sbjct: 24  HAMIAPGEAVLVGVSGGPDSVALLHALVRLQPELAVARV--SVAHVHHGLRGAEADADQA 81

Query: 72  YVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +V+ +  RL +        V+         +  AAR ARY   S+ A       I TAH 
Sbjct: 82  FVAALAERLGLPFYTEKIDVAAAARNTGASVEDAARTARYRFFSDTAAAHGYHKIATAHH 141

Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             D  E V M   R    +G+ G+  + + I+        RP +   REDI +FL    +
Sbjct: 142 AGDNAEWVLMNLVRGAGPEGLSGIPPVRENII--------RPLIHVSREDILAFLTHGGM 193

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
            + ED +N D  F R RVR  +
Sbjct: 194 DYVEDSTNADLTFTRNRVRHHL 215


>gi|88812394|ref|ZP_01127644.1| tRNA(Ile)-lysidine synthase [Nitrococcus mobilis Nb-231]
 gi|88790401|gb|EAR21518.1| tRNA(Ile)-lysidine synthase [Nitrococcus mobilis Nb-231]
          Length = 446

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 18/190 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS    + LH+ ++      +  SA+ VDH L   + D   +    C  L 
Sbjct: 22  LWIAYSGGCDST---VLLHAAVTS----GLPVSALHVDHGLHPESGDWALHCRARCQALG 74

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V          GL AAAR+ARY   +  A       I TAH  DDQ ETV +R  R
Sbjct: 75  VPLRVEPVTVRDGGEGLEAAARKARYQAYA--AILAPGECIATAHHVDDQAETVLLRILR 132

Query: 142 DYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                G G+ G+   I  +  L    + RP L   R ++ ++  +  +SW +DP+N  DR
Sbjct: 133 -----GTGIDGLAG-IPAERELGEGRLIRPLLGFCRAELVAYATRHELSWIDDPANRCDR 186

Query: 199 FERVRVRRFV 208
            +R  +R  V
Sbjct: 187 HDRSFLREHV 196


>gi|15642240|ref|NP_231873.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153820829|ref|ZP_01973496.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229512122|ref|ZP_04401601.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229519257|ref|ZP_04408700.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9]
 gi|229607187|ref|YP_002877835.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236]
 gi|254849373|ref|ZP_05238723.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10]
 gi|255747060|ref|ZP_05421005.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101]
 gi|262161395|ref|ZP_06030505.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1]
 gi|61217424|sp|Q9KPX0|TILS_VIBCH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|9656802|gb|AAF95386.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126521621|gb|EAZ78844.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229343946|gb|EEO08921.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9]
 gi|229352087|gb|EEO17028.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229369842|gb|ACQ60265.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236]
 gi|254845078|gb|EET23492.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10]
 gi|255735462|gb|EET90862.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101]
 gi|262028706|gb|EEY47360.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1]
          Length = 440

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   IL+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKILLALSGGVDSQ-VLLALLARGRD-EFG-WDVTAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            +Y    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQYCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|330964160|gb|EGH64420.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 441

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 8/178 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    S   +   AI V H L+  A     +   VC  L +A
Sbjct: 26  VGFSGGLDSTVLLHLLAELARRESLPALH--AIHVHHGLQAAADAWPEHCRQVCQALDVA 83

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V  K  +P   L  AAR+ARY   ++  +     +++T    DDQ ET+  R  R  
Sbjct: 84  FELVRVK-VEPGASLEQAARQARYTAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
             +G  L+ M +         ++RP L   R ++ S+  Q+ + W EDPSN + +F R
Sbjct: 141 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARQQGLRWVEDPSNDNQQFSR 195


>gi|225024422|ref|ZP_03713614.1| hypothetical protein EIKCOROL_01297 [Eikenella corrodens ATCC
           23834]
 gi|224942803|gb|EEG24012.1| hypothetical protein EIKCOROL_01297 [Eikenella corrodens ATCC
           23834]
          Length = 407

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS+   + LH + S R+   ++ SA+ V H L   A     +  ++C++ ++ 
Sbjct: 3   VGFSGGLDSV---VLLHLLCSLRNELPLELSAVHVHHGLDAPADQWAEFCHELCAQWQVP 59

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +   +    + GL AAAR  RY   ++     +A  +  AH  DDQ ET+ + + R  
Sbjct: 60  LRIERVQVEFGRLGLEAAARAKRYRCFAQ----SHADAVALAHHADDQAETLLLAALRGG 115

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             + +        +   ++LW  RP L   R ++ ++  +  ++W ED SN D    R  
Sbjct: 116 GLRALSAMPALRALNERISLW--RPLLAVSRTELLAYAQEHKLTWVEDSSNADTTLLRNW 173

Query: 204 VRR 206
           +RR
Sbjct: 174 LRR 176


>gi|150014990|ref|YP_001307244.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901455|gb|ABR32288.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 468

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 15/197 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           +L+ P   IL+A+SGG DS+ LL  L  +   R    I  +A  ++H LR E A ++ RY
Sbjct: 13  NLIKPNDKILIALSGGPDSICLLNVLFEL---REKLNISIAAAHLNHLLRGEDAFEDERY 69

Query: 73  VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V + C+ + I   V    ++  + + +     A R ARY    E  +      I TAH  
Sbjct: 70  VINTCNDMGIKCFVKRVDINAYSKESKLSSEMAGRNARYDFFDEILEKEGFNKIATAHNA 129

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +DQ ETV  R  R     G GL G+   I    +  I RP L   RE++ +++  +N++ 
Sbjct: 130 NDQAETVLFRLMR-----GTGLEGL-GGIRASRDDKIIRPILCLSREEVENYVKLKNLNP 183

Query: 189 CEDPSNTDDRFERVRVR 205
             D +N +  + R ++R
Sbjct: 184 RIDKTNFEKIYNRNKIR 200


>gi|185178872|ref|ZP_02964645.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024358|ref|ZP_02997027.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518716|ref|ZP_03004137.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524149|ref|ZP_03004218.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|225550464|ref|ZP_03771413.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551442|ref|ZP_03772388.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|184209509|gb|EDU06552.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018624|gb|EDU56664.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997679|gb|EDU66776.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195659937|gb|EDX53317.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|225379257|gb|EEH01622.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379618|gb|EEH01980.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 326

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 22/202 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L AVSGG DSM +L      +S             V++  RE+A  +   V D C +  +
Sbjct: 18  LAAVSGGPDSMAMLNMYKRNIS---------VVCHVNYHKRESADRDQEIVVDFCKKNNL 68

Query: 83  AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++      ++         A AR  RY    E  K  N   +  AH FDD LET YM
Sbjct: 69  PIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDFLETAYM 128

Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +  R       G+  S + + ++      + RP L  R++ ++ +  +  I +  D +N 
Sbjct: 129 QRARQSKALFYGIKESNVVNGMI------VKRPVLFIRKQTLQRYCDENKIKYGIDETNE 182

Query: 196 DDRFERVRVRRFVRDIDLHALY 217
            D +ER RVR+ + +  L+ +Y
Sbjct: 183 LDIYERNRVRKTISNWSLNEVY 204


>gi|62185345|ref|YP_220130.1| hypothetical protein CAB732 [Chlamydophila abortus S26/3]
 gi|81312504|sp|Q5L5B2|TILS_CHLAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|62148412|emb|CAH64179.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 317

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 19/199 (9%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  +L      L+A+SGGSDS+ LL  L S         + F+A+ VD+  RE++  E  
Sbjct: 15  FFSALDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESSYREAE 67

Query: 72  YVSDVCSR----LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   C      L + H    +  SK P+      AR  RYAL  +  +  N   I  AH
Sbjct: 68  ELKLRCQEEGVPLIVDHVPSKYTTSKDPEN----TARRYRYALFCKICREDNLAGIFLAH 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +DQ ETV  R     A  G  L GM     Y+  + + RP L   ++ +   L   NI
Sbjct: 124 HANDQAETVLKRVLEG-ASLG-NLKGMTSGASYN-RIPLLRPLLHIPKQVLMQTLDAENI 180

Query: 187 SWCEDPSNTDDRFERVRVR 205
           ++  D +NTD+R+ R R+R
Sbjct: 181 AYVHDVTNTDERYLRARMR 199


>gi|323143578|ref|ZP_08078255.1| tRNA(Ile)-lysidine synthetase [Succinatimonas hippei YIT 12066]
 gi|322416641|gb|EFY07298.1| tRNA(Ile)-lysidine synthetase [Succinatimonas hippei YIT 12066]
          Length = 449

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 24/196 (12%)

Query: 19  PAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVS 74
           PA I V +SGG+DS + LL+A     +D      +FS ++  HC+     D+   +++  
Sbjct: 23  PAPITVGLSGGADSTLALLVACKLQETDP-----RFSVLAC-HCIHGLDADDPIWLKHCQ 76

Query: 75  DVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           D+C RL++       ++V      P+     A+R+ RY  + E+  + N  L M  H  D
Sbjct: 77  DLCQRLKVKLVTPKLNIVYGNGVSPED----ASRKERYRALLENL-SPNGYL-MLGHQSD 130

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ+E + +  +R    +G+G  GM  T+  D    I RP L   ++DI + L      W 
Sbjct: 131 DQVENLLLALKRGSGPRGLG--GM-STVTCDNRGTIIRPLLDLSKKDIENILTALGFDWV 187

Query: 190 EDPSNTDDRFERVRVR 205
            D SNT  +FER  +R
Sbjct: 188 FDISNTYLKFERNFIR 203


>gi|237743038|ref|ZP_04573519.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 7_1]
 gi|229433598|gb|EEO43810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 7_1]
          Length = 448

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---QNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    + G  L    RE RY   SE  K I A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKKIPVKEIAKEVGKTLEEVGREERYKFFSEIYKKIGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G  L G+    + + N  I RP     ++DI ++L +  I +  D +N +
Sbjct: 140 FRLIR-----GASLQGLEGIKIKNNN--IIRPISEIYKKDILNYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NDFTRNSIR 201


>gi|209528292|ref|ZP_03276753.1| tRNA(Ile)-lysidine synthetase [Arthrospira maxima CS-328]
 gi|209491278|gb|EDZ91672.1| tRNA(Ile)-lysidine synthetase [Arthrospira maxima CS-328]
          Length = 344

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 21/193 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM L+  L  +    ++       I++ HC  +  +D V   +D   +L 
Sbjct: 30  LLVAVSGGQDSMCLIRLLLDLQEKWNW------RIAIAHCDHQWRRDSVAN-ADYIEQLG 82

Query: 82  IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
               V  ++ + PQ     AAARE RY ++ E A+T N   ++T HT  D+ ET+     
Sbjct: 83  KIWQVPCYRLTAPQIPKTEAAAREWRYQVLGEIAQTDNYGYVVTGHTKSDRAETLLYNLI 142

Query: 141 RDYAEKGMGLSGMCDTIL--------YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           R     G G  G+   +          +    + RP L   R++   F  QR++   ED 
Sbjct: 143 R-----GSGADGLSSLVWSRPIFGRETETKPILVRPLLEITRKETGEFCQQRDLPIWEDS 197

Query: 193 SNTDDRFERVRVR 205
           +NTD  + R R+R
Sbjct: 198 TNTDVSYARNRIR 210


>gi|166154184|ref|YP_001654302.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 434/Bu]
 gi|166155059|ref|YP_001653314.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335429|ref|ZP_07223673.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis L2tet1]
 gi|259533695|sp|B0B969|TILS_CHLT2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|259533707|sp|B0BAU8|TILS_CHLTB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|165930172|emb|CAP03656.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 434/Bu]
 gi|165931047|emb|CAP06610.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 321

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL      L+A+SGGSDS+ L+  L S         I F+A+ VD+  RET+  E  
Sbjct: 15  FFSSLDKKKKYLLALSGGSDSLFLMYLLKS-------RAIFFTAVHVDYGWRETSYQEAS 67

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++ +C + +I   +   + + P     +  AAR  RY L     K    + +   H  D
Sbjct: 68  DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127

Query: 130 DQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DQ ET+    +R +    +G L GM   ++Y  ++ + RP L   +  I   L    + +
Sbjct: 128 DQAETIL---KRVFEGAHLGNLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQY 183

Query: 189 CEDPSNTDDRFERVRVR 205
            +D +N ++RF R R+R
Sbjct: 184 VQDITNCNERFLRARMR 200


>gi|306815213|ref|ZP_07449362.1| tRNA(Ile)-lysidine synthetase [Escherichia coli NC101]
 gi|305850875|gb|EFM51330.1| tRNA(Ile)-lysidine synthetase [Escherichia coli NC101]
          Length = 421

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 9/179 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +A SGG DS    + LH ++  R+    +   AI V H L   A   V++  ++C + ++
Sbjct: 1   MAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVKHCENICQQWQV 57

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET  +  +R 
Sbjct: 58  PLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCETFLLALKRG 115

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               G  LS M +   +     I RP L   R ++  + L   + W ED SN DD ++R
Sbjct: 116 SGPAG--LSAMAEVSEFAGTQLI-RPLLARTRGELVQWALAHGLRWIEDESNQDDSYDR 171


>gi|195867457|ref|ZP_03079461.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|209554128|ref|YP_002284496.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|195660933|gb|EDX54186.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|209541629|gb|ACI59858.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 326

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 22/202 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L AVSGG DSM +L      +S             V++  RE+A  +   V D C +  +
Sbjct: 18  LAAVSGGPDSMAMLNMYKRNIS---------VVCHVNYHKRESADRDQEIVVDFCKKNNL 68

Query: 83  AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++      ++         A AR  RY    E  K  N   +  AH FDD LET YM
Sbjct: 69  PIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDFLETAYM 128

Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +  R       G+  S + + ++      + RP L  R++ ++ +  +  I +  D +N 
Sbjct: 129 QRARQSKALFYGIKESNVVNGMI------VKRPVLFIRKQTLQRYCDENKIKYGIDETNE 182

Query: 196 DDRFERVRVRRFVRDIDLHALY 217
            D +ER RVR+ + +  L+ +Y
Sbjct: 183 LDIYERNRVRKTISNWSLNEVY 204


>gi|188588191|ref|YP_001919610.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498472|gb|ACD51608.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 468

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 25/255 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ILVA+SGG DS+ LL  L  +   R    I+  A  ++H LR E A  +  +V   C  +
Sbjct: 21  ILVALSGGPDSLCLLNILKEL---REELDIEIGAAHLNHLLRGEDAFKDEEFVISTCKEM 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I + V    ++  + + +     A R  RY    E  K      I TAH  +DQ ET+ 
Sbjct: 78  NIPYYVKRVDINKYSKEHKLSSELAGRNVRYGFFDEILKKDGFNKIATAHNANDQAETII 137

Query: 137 MRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            R  R    +G+G   +C  D I+        RP L   R+++  ++ ++N++   D +N
Sbjct: 138 FRLMRGTGLEGLGGIKVCREDKII--------RPILCLTRKEVEKYIKEKNLNPRIDKTN 189

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
               FE++  R  +R   L  +      F +  VK  N +++LI K      R  I    
Sbjct: 190 ----FEKIYNRNKIR---LDIIPYIQNNFNEDIVKTLNRMSLLIQKDNAFIERLCIKAYN 242

Query: 255 DILNIDSTLLFYLLR 269
           +    ++   FY+L+
Sbjct: 243 EYCKKNTDSKFYILK 257


>gi|332283467|ref|YP_004415378.1| cell cycle protein MesJ [Pusillimonas sp. T7-7]
 gi|330427420|gb|AEC18754.1| cell cycle protein MesJ [Pusillimonas sp. T7-7]
          Length = 342

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 11/189 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + +SGG+DS   ++A+H+ L  R  G ++     V H L+  A     +V D+   L+
Sbjct: 33  IGIGLSGGADSA--MLAVHAALYGRRTG-VELHCFHVHHGLQAPADGWQTHVHDLAQMLQ 89

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I+ H+     +     G+ +AAR+ RY  + E A   N   I+ AH  +DQ ETV +R  
Sbjct: 90  ISCHTRFVQVDVSGGDGMESAARDMRYDALQELAVQANLHHILLAHHQNDQAETVLLRLL 149

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI--RSFLLQRNISW--CEDPSNTD 196
           R      +GL+ M   ++    L   RP+L   R  I  ++ L      W    DPSN D
Sbjct: 150 RGAGP--IGLAAMA-PVMQRQGLSYVRPWLEVDRALILQQAELFASLTGWVPVSDPSNAD 206

Query: 197 DRFERVRVR 205
           D++ R  +R
Sbjct: 207 DQYTRAALR 215


>gi|251779290|ref|ZP_04822210.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083605|gb|EES49495.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 468

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 25/255 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ILVA+SGG DS+ LL  L  +   R    I+  A  ++H LR E A  +  +V   C  +
Sbjct: 21  ILVALSGGPDSLCLLNILKEL---REELDIEIGAAHLNHLLRGEDAFKDEEFVISTCKEM 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I + V    ++  + + +     A R  RY    E  K      I TAH  +DQ ET+ 
Sbjct: 78  NIPYYVKRVDINKYSKEHKLSSELAGRNVRYGFFDEILKKDGFNKIATAHNANDQAETII 137

Query: 137 MRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            R  R    +G+G   +C  D I+        RP L   R+++  ++ ++N++   D +N
Sbjct: 138 FRLMRGTGLEGLGGIKVCREDKII--------RPILCLTRKEVEKYIKEKNLNPRIDKTN 189

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
               FE++  R  +R   L  +      F +  VK  N +++LI K      R  I    
Sbjct: 190 ----FEKIYNRNKIR---LDIIPYIQNNFNEDIVKTLNRMSLLIQKDNAFIERLCIKAYN 242

Query: 255 DILNIDSTLLFYLLR 269
           +    ++   FY+L+
Sbjct: 243 EYCKKNTDSKFYILK 257


>gi|76789585|ref|YP_328671.1| TilS [Chlamydia trachomatis A/HAR-13]
 gi|237803272|ref|YP_002888466.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/Jali20/OT]
 gi|237805193|ref|YP_002889347.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311681|ref|ZP_05354251.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 6276]
 gi|255317982|ref|ZP_05359228.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 6276s]
 gi|255349245|ref|ZP_05381252.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 70]
 gi|255503782|ref|ZP_05382172.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 70s]
 gi|255507463|ref|ZP_05383102.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis D(s)2923]
 gi|123606544|sp|Q3KKJ9|TILS_CHLTA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|76168115|gb|AAX51123.1| TilS [Chlamydia trachomatis A/HAR-13]
 gi|231273493|emb|CAX10409.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274506|emb|CAX11302.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/Jali20/OT]
 gi|289525886|emb|CBJ15368.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis Sweden2]
 gi|296435472|gb|ADH17650.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis E/150]
 gi|296436396|gb|ADH18570.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/9768]
 gi|296438255|gb|ADH20416.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/11074]
 gi|296439189|gb|ADH21342.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis E/11023]
 gi|297140756|gb|ADH97514.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/9301]
          Length = 321

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL      L+A+SGGSDS+ L+  L S         I F+A+ VD+  RET+  E  
Sbjct: 15  FFSSLDKKKKYLLALSGGSDSLFLMYLLKS-------RAIFFTAVHVDYGWRETSYQEAS 67

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++ +C + +I   +   + + P     +  AAR  RY L     K    + +   H  D
Sbjct: 68  DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127

Query: 130 DQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DQ ET+    +R +    +G L GM   ++Y  ++ + RP L   +  I   L    + +
Sbjct: 128 DQAETIL---KRVFEGAHLGNLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQY 183

Query: 189 CEDPSNTDDRFERVRVR 205
            +D +N ++RF R R+R
Sbjct: 184 VQDITNCNERFLRARMR 200


>gi|325663698|ref|ZP_08152102.1| hypothetical protein HMPREF0490_02843 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470191|gb|EGC73424.1| hypothetical protein HMPREF0490_02843 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 367

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 90/208 (43%), Gaps = 19/208 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           I+  R F R       ++  +SGG+DS+ L   LH +  +     +K  A+ V+H +R E
Sbjct: 26  IQEHRMFERGET----VITGISGGADSVCLFFILHYLQEELG---VKLVAVHVNHGIRGE 78

Query: 65  TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            A  + R+V ++C      L I    +     K +  +  A R  R       A+   A 
Sbjct: 79  DADADERFVQNICETAGIPLEIVRCNLELIAKKRKQSMEEAGRNIRREAFERAAQKYGAA 138

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I  AH  +D  ET+ M   R     G GL+GM  T +  +     RP L   R +I  F
Sbjct: 139 KIALAHHKNDNAETLLMNLVR-----GTGLNGM--TGIKPVRDRYVRPLLCLERREIEGF 191

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
           L Q  I +  D +N  + + R ++R  V
Sbjct: 192 LEQNGIRYQTDQTNLTEDYTRNKIRNRV 219


>gi|21674432|ref|NP_662497.1| MesJ protein [Chlorobium tepidum TLS]
 gi|61216669|sp|Q8KC15|TILS_CHLTE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21647616|gb|AAM72839.1| tRNA(Ile)-lysidine synthetase [Chlorobium tepidum TLS]
          Length = 331

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 147/349 (42%), Gaps = 67/349 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77
           +L+AVSGG DSM LL    SV S      +    + V HC   LR  A D +  +V D C
Sbjct: 24  VLLAVSGGPDSMALLHLFASVAS------VLHCRLGVAHCNFMLRGDASDADESFVRDAC 77

Query: 78  SRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           + L I   V          +WK S  +T     AR  RY    E  +  + T I T H  
Sbjct: 78  AELGIDFHVRRFDTASVSSAWKKSIEET-----ARLLRYDFFGELCREASYTRIATGHHS 132

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD  ETV     R     G G+SG+    +   +  I RP L   R +I ++L ++ + W
Sbjct: 133 DDNAETVLFNLFR-----GAGISGLRGIRVR--HGAIIRPLLPFTRREIVAYLEEKRVVW 185

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            +D +N    ++    R F+R                     N  + ++  ++    M S
Sbjct: 186 RDDHTNEGIEYD----RNFIR---------------------NRVIPVIEERFAHKLMPS 220

Query: 249 IIAISQDILNIDSTLLFYLLRVSAA-----ICGGQISLPGYRSM---ERVMLFLKSGKRG 300
           +  IS+    ++  +  ++ R+  A     + GG++ +   R +   ER  +  ++ K  
Sbjct: 221 LQRISEHAGELEEFIDLHISRLLEAHPGLDLAGGKLHVGTMRQLSMFERKEILKRALKLQ 280

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349
            +S+G  V++R A  L   +A R++P       E  + DG  +F+   +
Sbjct: 281 GLSVGSNVLNRIAGLL-DNQAGRSVPAGAGV--EVVLHDGFLRFRQTGN 326


>gi|319955124|ref|YP_004166391.1| tRNA(ile)-lysidine synthase [Cellulophaga algicola DSM 14237]
 gi|319423784|gb|ADV50893.1| tRNA(Ile)-lysidine synthase [Cellulophaga algicola DSM 14237]
          Length = 435

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 21/192 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCS 78
           H L+A SGG DS+ +L+ L   +       ++FS    +  LR  E+  DE  +V  + +
Sbjct: 20  HFLLACSGGIDSV-ILVHLCKAIG------LEFSLAHCNFNLRGLESDADEA-FVKLLAA 71

Query: 79  RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I   V S+  ++     +  L  AARE RYA  SE         ++TAH  DD LET
Sbjct: 72  DFKIPFYVTSFDTAQYMNTHKVSLQIAARELRYAWFSELQSKHKIPTLVTAHHADDSLET 131

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R     G G+ G+  T + +    I+RP L   RE I  +  +  ISW ED SN
Sbjct: 132 FLINLSR-----GTGIDGL--TGIPERTPTIARPLLLFSREQILDYAHRFTISWREDKSN 184

Query: 195 TDDRFERVRVRR 206
            + ++ R ++R 
Sbjct: 185 QETKYLRNKIRH 196


>gi|313675080|ref|YP_004053076.1| tRNA(ile)-lysidine synthetase [Marivirga tractuosa DSM 4126]
 gi|312941778|gb|ADR20968.1| tRNA(Ile)-lysidine synthetase [Marivirga tractuosa DSM 4126]
          Length = 438

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 19/208 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  I+    F R      H+L+A+SGG DS+ L   L   L+D       FS   ++  
Sbjct: 6   FLDYIKKESLFNRH----EHLLLAISGGLDSVVLAHLLK--LTD-----FHFSMAHMNFQ 54

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR E +  + ++V ++  +L +   V   +  K +      AR+ RY       K  + +
Sbjct: 55  LRDEDSNRDEKFVRELAKKLEVEVFVKRVEIDKEKGSTQLQARDLRYDWFRRLMKDHHFS 114

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++TAH  +D LET  +   R     G G+ G+   +    N  I+RP L   +E I+ +
Sbjct: 115 KLLTAHHANDLLETTLLNLIR-----GTGIKGLRSILPLHHN--IARPLLFASKEQIKEY 167

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
             + +I W ED SN  ++++R ++R  V
Sbjct: 168 AEENSIEWREDVSNASEKYKRNKMRHRV 195


>gi|223936702|ref|ZP_03628612.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514]
 gi|223894553|gb|EEF61004.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514]
          Length = 457

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 16/207 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE+ + F R       ILV VSGG DSM LL  L  + S   +     +   ++H LR  
Sbjct: 16  IEARQLFGRG----ERILVGVSGGLDSMVLLEVLSELASKHDW---TLAVAHLNHSLRGR 68

Query: 66  AKD-EVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           + D + R V     RL     +  + V     K    L  AAR  R+  ++  A+ +   
Sbjct: 69  SSDADERLVRRTAERLGCQCVVERAEVRKFGRKAGLSLEMAARRLRHEFLARSARKLGIK 128

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIR 178
           ++  AH  DDQ+E   +R  R  + +  GL+GM   +    D  L + RP L  R+ ++ 
Sbjct: 129 VVALAHHADDQVELFLLRLLRGASSE--GLAGMDWKVASPVDKGLGLVRPLLEVRKSELE 186

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
            F  Q  + + +D +N      R RVR
Sbjct: 187 GFAQQEGVKFRKDATNESQEILRNRVR 213


>gi|13899157|gb|AAG12421.1| MesJ [Chlorobaculum tepidum]
          Length = 351

 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 147/349 (42%), Gaps = 67/349 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77
           +L+AVSGG DSM LL    SV S      +    + V HC   LR  A D +  +V D C
Sbjct: 44  VLLAVSGGPDSMALLHLFASVAS------VLHCRLGVAHCNFMLRGDASDADESFVRDAC 97

Query: 78  SRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           + L I   V          +WK S  +T     AR  RY    E  +  + T I T H  
Sbjct: 98  AELGIDFHVRRFDTASVSSAWKKSIEET-----ARLLRYDFFGELCREASYTRIATGHHS 152

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD  ETV     R     G G+SG+    +   +  I RP L   R +I ++L ++ + W
Sbjct: 153 DDNAETVLFNLFR-----GAGISGLRGIRVR--HGAIIRPLLPFTRREIVAYLEEKRVVW 205

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            +D +N    ++    R F+R                     N  + ++  ++    M S
Sbjct: 206 RDDHTNEGIEYD----RNFIR---------------------NRVIPVIEERFAHKLMPS 240

Query: 249 IIAISQDILNIDSTLLFYLLRVSAA-----ICGGQISLPGYRSM---ERVMLFLKSGKRG 300
           +  IS+    ++  +  ++ R+  A     + GG++ +   R +   ER  +  ++ K  
Sbjct: 241 LQRISEHAGELEEFIDLHISRLLEAHPGLDLAGGKLHVGTMRQLSMFERKEILKRALKLQ 300

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349
            +S+G  V++R A  L   +A R++P       E  + DG  +F+   +
Sbjct: 301 GLSVGSNVLNRIAGLL-DNQAGRSVPAGAGV--EVVLHDGFLRFRQTGN 346


>gi|171920688|ref|ZP_02931912.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|171903424|gb|EDT49713.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
          Length = 326

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 22/202 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L AVSGG DSM +L      +S             V++  RE+A  +   V D C +  +
Sbjct: 18  LAAVSGGPDSMAMLNMYKRNIS---------VVCHVNYHKRESADRDQEIVVDFCKKNNL 68

Query: 83  AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++      ++         A AR  RY    E  K  N   +  AH FDD LET YM
Sbjct: 69  PIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDFLETAYM 128

Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +  R       G+  S   + ++      + RP L  R++ ++ +  +  I +  D +N 
Sbjct: 129 QRARQSKALFYGIKESNFVNGMI------VKRPVLFIRKQTLQRYCDENKIKYGIDETNE 182

Query: 196 DDRFERVRVRRFVRDIDLHALY 217
            D +ER RVR+ + +  L+ +Y
Sbjct: 183 LDIYERNRVRKTISNWSLNEVY 204


>gi|308185759|ref|YP_003929890.1| cell cycle protein [Pantoea vagans C9-1]
 gi|308056269|gb|ADO08441.1| cell cycle protein [Pantoea vagans C9-1]
          Length = 466

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 126/286 (44%), Gaps = 24/286 (8%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLS-DRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +L+ P A ++VA SGG DS    + LH +L   +   +    A+ V H L   A     +
Sbjct: 36  ALLQPDAALVVAFSGGLDST---VLLHQLLGWQQQHPQSHLRALHVHHGLSPNADAWAAH 92

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C + ++   V+       + G+ AAAR ARY  +S   K     +++TA   DDQ 
Sbjct: 93  CQTICEQWQLRCDVLRVTVDGRENGIEAAARTARYQALSAALKP--GEILLTAQHLDDQC 150

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  L+ M  + +   +  + RP L   R+ + ++     + W +D 
Sbjct: 151 ETFLLALKRGSGPAG--LAAMPSSRMLGTHQ-LVRPLLNQSRQSLEAYADVHQLVWIDDE 207

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSI 249
           SN D R++    R F+R   L  LY +   F +   +   + +    L+ + L   +  +
Sbjct: 208 SNQDLRYD----RNFLRQRLLPELYQRWPHFAEATARSAALCSEQEQLLDELLAGQLAEL 263

Query: 250 IAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           I          ++N+ +     LLR   A  GG  ++P   +++R+
Sbjct: 264 IQPDGSLYFPPLMNMSTLRANALLRRWIAGQGG--AMPSRDALKRI 307


>gi|15605575|ref|NP_220361.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|61216368|sp|O84847|TILS_CHLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3329312|gb|AAC68437.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|296437327|gb|ADH19497.1| PP-loop superfamily ATPase [Chlamydia trachomatis G/11222]
 gi|297748968|gb|ADI51514.1| TilS [Chlamydia trachomatis D-EC]
 gi|297749848|gb|ADI52526.1| TilS [Chlamydia trachomatis D-LC]
          Length = 321

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL      L+A+SGGSDS+ L+  L S         I F+A+ VD+  RET+  E  
Sbjct: 15  FFSSLDKKKKYLLALSGGSDSLFLMYLLKS-------RAIFFTAVHVDYGWRETSYQEAS 67

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++ +C + +I   +   + + P     +  AAR  RY L     K    + +   H  D
Sbjct: 68  DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127

Query: 130 DQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DQ ET+    +R +    +G L GM   ++Y  ++ + RP L   +  I   L    + +
Sbjct: 128 DQAETIL---KRVFEGAHLGNLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQY 183

Query: 189 CEDPSNTDDRFERVRVR 205
            +D +N ++RF R R+R
Sbjct: 184 VQDITNCNERFLRARMR 200


>gi|255020986|ref|ZP_05293041.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254969591|gb|EET27098.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 465

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 12/185 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS  L  ALH++  D       F A  VDH     + +     ++V +   
Sbjct: 25  VILAFSGGRDSTALFWALHAIGQD-------FVAAHVDHGWHPRSAEWAARCAEVAASAG 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +          G    AR  RYA +   +       ++TA   DDQ ET  +++ R
Sbjct: 78  VPFVLRQLGKDLCGEGPEDVARRGRYAAL--QSLLGPGQFLLTAQHRDDQAETFLLQALR 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+        +   +   ++RP L C  + ++ +L +R + W EDP+N D RF R
Sbjct: 136 GAGAAGLAAMPWRRPLGSGV---LARPLLDCSGQTLQGYLHRRGLQWIEDPANRDPRFAR 192

Query: 202 VRVRR 206
            RVRR
Sbjct: 193 SRVRR 197


>gi|282852626|ref|ZP_06261968.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gasseri 224-1]
 gi|282556368|gb|EFB61988.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gasseri 224-1]
          Length = 238

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 10/155 (6%)

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKT 116
           +DHCLR+ +  E   +  + +  +I     SW  +  PQTG+ A ARE RYA ++   K 
Sbjct: 23  LDHCLRKDSYLESELLQKLTTAFKIKLIEKSWPVALHPQTGIEAKAREFRYAFLAHTGKK 82

Query: 117 INATLIMTAHTFDDQLETVYMRSQR--DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCR 173
                ++TAH  DD +E + ++  R  D AE   + + G  D+      + + RP ++  
Sbjct: 83  YQVDYLLTAHHGDDLIENILLKFIRSGDVAEMNSLQIVGNLDS------MRLLRPLIKYS 136

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           ++ +  +  +  + + ED +N +D   R R+R +V
Sbjct: 137 KDQLLEYDKRNGLDYIEDETNFEDDTLRNRLRHYV 171


>gi|238917789|ref|YP_002931306.1| cell cycle protein MesJ [Eubacterium eligens ATCC 27750]
 gi|238873149|gb|ACR72859.1| cell cycle protein MesJ [Eubacterium eligens ATCC 27750]
          Length = 486

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 17/193 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V +SGG+DS+ LL+ L   +  R   + +  A+ V+H +R+ A D+  +   +C R+ 
Sbjct: 24  VVVGLSGGADSVCLLMVLKGYIERRRL-QTELCAVHVNHGIRQEAGDDEEFARALCERMG 82

Query: 82  I---AHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +   A+ + +   +K Q G+    A R+ RY + +E  K  NA  I  AH  +DQ ETV 
Sbjct: 83  VEFMAYHIDAAGLAK-QLGMSVEEAGRKERYRIFNEACKGRNAR-IAVAHHMNDQAETVL 140

Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           M   R  + KG+ G+  + D I+        RP L   R ++   L   N  +  D +N 
Sbjct: 141 MNLSRGTSLKGIGGIRPVRDNII--------RPLLSVTRAEVEEVLKDFNQPYVTDATNL 192

Query: 196 DDRFERVRVRRFV 208
            + + R  +R  V
Sbjct: 193 CNDYTRNSLRNVV 205


>gi|24373213|ref|NP_717256.1| cell cycle protein MesJ [Shewanella oneidensis MR-1]
 gi|61216652|sp|Q8EGF9|TILS_SHEON RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|24347437|gb|AAN54700.1|AE015610_4 cell cycle protein MesJ [Shewanella oneidensis MR-1]
          Length = 464

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS  L   L      R    +++  I V H L   A +  ++     +R  
Sbjct: 25  LVLAYSGGVDSEVLAYGLSEYAKQRP--DLRYQLIYVHHGLSPNADNWAKHCQ---ARAA 79

Query: 82  IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I    V+ +  +    P+  + A AR+ARY  I  H    +  +++TAH  DDQLET+ +
Sbjct: 80  IYGLPVTVERVQLILGPRVSVEAEARKARYQAILPHLNPQD--ILLTAHHEDDQLETILL 137

Query: 138 RSQRDYAEKGMGLSGMCDTI-LYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             +R    KG+   G    + L D    +  RP L   RE I +F   R +   ED SN 
Sbjct: 138 ALKRGQGPKGLAAMGQIQPLSLADKGSCLQVRPLLDISREMIETFAQTRQLVHIEDESNQ 197

Query: 196 DDRFER 201
           DD+++R
Sbjct: 198 DDKYDR 203


>gi|260221174|emb|CBA29474.1| tRNA(Ile)-lysidine synthase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 326

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 86/189 (45%), Gaps = 18/189 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG+DS  LL+A     + +  G++   AI V+H L+  A D   +   VCSRL I 
Sbjct: 20  VAYSGGADSSALLVAC----ARQWPGQV--VAIHVNHGLQAAAADFEAHCRSVCSRLGIP 73

Query: 84  -HSVVSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            H      ++ P      AAR ARY    AL       +    I  A   DDQ+ET+ + 
Sbjct: 74  LHVEAVHAHAVPGQSPEDAARIARYKAFDALAQMECAGVAIKSIAIAQHADDQVETMLLA 133

Query: 139 SQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R     G GL+G+           +   RP L+   + ++ +L+  N  W  DP+N D
Sbjct: 134 LGR-----GAGLAGLSGMPAQWQRGKVHFFRPLLQVAGDALKRWLVANNEPWVSDPTNAD 188

Query: 197 DRFERVRVR 205
            R+ R  +R
Sbjct: 189 HRYTRNHIR 197


>gi|330985127|gb|EGH83230.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 445

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 6/156 (3%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             AI V H L+  A     +   VC  L +A  +V   N  P   +  AAR+ARY   ++
Sbjct: 57  LHAIHVHHGLQAAANAWPEHCRRVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +     +++T    DDQ ET+  R  R    +G  L+ M D  +      + RP L  
Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRG--LAAMPDQRILGRGH-LVRPLLAV 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            R ++  +  Q  ++W EDPSN D RF R  +R  V
Sbjct: 171 SRVELEGYAHQHGLNWVEDPSNDDSRFSRNFLRSDV 206


>gi|313646751|gb|EFS11210.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 2457T]
 gi|333010683|gb|EGK30116.1| tRNA(Ile)-lysidine synthase [Shigella flexneri VA-6]
          Length = 416

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +A SGG DS    + LH ++  R+    +   AI V H L   A   V +  +VC + ++
Sbjct: 1   MAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVTHCENVCQQWQV 57

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET  +  +R 
Sbjct: 58  PLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCETFLLALKRG 115

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               G  LS M +   +     I RP L   R ++  + L   + W ED SN DD ++R
Sbjct: 116 SGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELEQWALAHGLRWIEDESNQDDSYDR 171


>gi|256397528|ref|YP_003119092.1| tRNA(Ile)-lysidine synthetase [Catenulispora acidiphila DSM 44928]
 gi|256363754|gb|ACU77251.1| tRNA(Ile)-lysidine synthetase [Catenulispora acidiphila DSM 44928]
          Length = 358

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L     +LVA SGG+DS+ L  A   V    S   ++F  ++VDH L+E + 
Sbjct: 13  AVRKTLSGLAPGGLVLVACSGGADSIALACATAFVAPRLS---LRFGGLTVDHNLQEGSA 69

Query: 68  DE----VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            +    VR+++ +      + SV    +  P+    AAAR ARY  +   A+ + A  ++
Sbjct: 70  AQAERVVRFLASLGFDPVESLSVRVEGHGGPE----AAARVARYGALDAAAERLGAATVL 125

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLL 182
             HT DDQ ETV +   R    +   L+GM      Y      +RPFL   R    +   
Sbjct: 126 LGHTRDDQAETVLLGLARGSGAR--SLAGMPAQAGRY------ARPFLDLPRATTVAASA 177

Query: 183 QRNISWCEDPSNTDDRFERVRVR 205
                  +DP N D  + R RVR
Sbjct: 178 AEGFEPWDDPHNADPAYTRSRVR 200


>gi|255692690|ref|ZP_05416365.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565]
 gi|260621576|gb|EEX44447.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565]
          Length = 426

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 21/190 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ILVA+SGG+DS+ LL  LH+          +  A   +  LR  E+ +DE ++V  +C +
Sbjct: 22  ILVALSGGADSVALLCILHT-------AGYRCEAAHCNFHLRGEESNRDE-QFVRQLCEK 73

Query: 80  LRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +I    + +  ++  T     +   ARE RY    +  K   A +I  AH  DD +ET+
Sbjct: 74  YKINLHTIDFDTTRYATEKHISIEMGARELRYNWFEKTRKDCQADVIAVAHHQDDSVETI 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G G++G+    +   N  + RP L   RE+I  +L      +  D +N 
Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGVVVRPLLCINREEIIHYLQSIQQEYVTDSTNL 186

Query: 196 DDRFERVRVR 205
           +D + R ++R
Sbjct: 187 EDEYTRNKIR 196


>gi|172061025|ref|YP_001808677.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6]
 gi|171993542|gb|ACB64461.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6]
          Length = 468

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 25/228 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVALADLPADARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122
           A   V +      RL +  +  S +   P+    G+ A+ARE RYA +    +      +
Sbjct: 69  ADAWVAHAQATAERLGV--TFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVAAL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
             A   DDQ ETV ++  R     G G++G+            ++   RPFLR  R  + 
Sbjct: 127 WVAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGASVERVRPFLRLLRAQLE 181

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID-LHALYLKMKKFQD 225
            +  QR ++W +D SN D R+ R  +R     ID L AL +    F+D
Sbjct: 182 RYAAQRELAWIDDESNADTRYARNALR-----IDVLPALAMHFPGFRD 224


>gi|319790338|ref|YP_004151971.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1]
 gi|317114840|gb|ADU97330.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1]
          Length = 443

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 13/194 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVR 71
           +L+ P   +LVA+SGG DS+ LL  L  +  +     +  +A+ V+H LR  E+ +DE R
Sbjct: 14  NLIPPGSKLLVALSGGPDSVALLNVLLELRGELQLSSL--AAVHVNHQLRGAESERDE-R 70

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +V ++C +L +         +    G+ AAAR+ RY +     +      +   HT  D 
Sbjct: 71  FVKELCGQLGVPLFTERVTVNPKGKGVEAAARQERYRVFDRVLRLWKGDYVALGHTASDL 130

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +        KG G+ G+    L   + ++ RP     R ++  +L  + + +  D
Sbjct: 131 AETVLLN-----LAKGTGIRGL-RGFLPKRDRYV-RPLFEVTRREVEEYLELKGLPYIVD 183

Query: 192 PSNTDDRFERVRVR 205
            SN    FER  +R
Sbjct: 184 SSNLSTDFERNLIR 197


>gi|295098677|emb|CBK87767.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 428

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +LV  SGG DS  LL  L  +  DR    ++  A+ + H L   A D V +   VCS  
Sbjct: 15  QLLVGFSGGLDSTVLLHRL-KLWRDRE-PDVQLRAMHIHHGLSPHADDWVAHCEAVCSGW 72

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   V          G+ A AR+ARYA  S   +   A  ++TA   DDQ ET  +  +
Sbjct: 73  AIPLIVERVTLEDEGLGIEAQARKARYAAFSGALQQGEA--LVTAQHLDDQCETFLLALK 130

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G  LS M +   +     I RP L   R  + ++  Q ++ W ED SN DD ++
Sbjct: 131 RGSGPAG--LSAMPERADFAETELI-RPLLGETRASLEAWAQQHHLCWIEDESNQDDSYD 187

Query: 201 R 201
           R
Sbjct: 188 R 188


>gi|237742841|ref|ZP_04573322.1| cell cycle protein MesJ [Fusobacterium sp. 4_1_13]
 gi|229430489|gb|EEO40701.1| cell cycle protein MesJ [Fusobacterium sp. 4_1_13]
          Length = 446

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    + G  L    RE RY   SE  K I A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKIEANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  R     G  L G+    + + N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FKLIR-----GTSLQGLEGIKVKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|255102772|ref|ZP_05331749.1| putative ATPase [Clostridium difficile QCD-63q42]
          Length = 462

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           I++ +SGG DS+ LL  L+ +  D +   I+  A  ++H +R  E  KD + YVS +C  
Sbjct: 22  IVLGLSGGPDSVCLLHVLNRLKKDFN---IEIYAAHLNHQIRGIEAQKDAL-YVSKLCED 77

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + I   V S    K        L   AR+ RY +  E    I A  I   H  +DQ ETV
Sbjct: 78  MGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLNDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+   I Y  +  I RP L   R +I  +    N++   D +N 
Sbjct: 138 MMRIMR-----GTGLKGL-KGIDYIRDNCIIRPILDVERNEIEEYCEAYNLNPRIDKTNL 191

Query: 196 DDRFERVRVR 205
           ++ + R ++R
Sbjct: 192 ENIYTRNKIR 201


>gi|168334111|ref|ZP_02692324.1| tRNA(Ile)-lysidine synthetase [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 450

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 20/189 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG+DSM LL  L+    +++F  I      V+H +R  A+ ++ +V +      
Sbjct: 26  IVVAVSGGADSMMLLDYLYR---NKNFLYISIRIAHVNHKMRVDAEKDMEFVKNYAKERE 82

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   V+        +K +    AA R+ RY    E  +++  T I TAHT +DQ ETV M
Sbjct: 83  IICDVLECDIEALAAKTKMSSEAAGRKVRY----EFFESLPHTKIATAHTANDQAETVLM 138

Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R  R    KG+ G++   + I+        RP L   RE++  +     I +  D +N  
Sbjct: 139 RFLRGSDVKGLSGINAKRENII--------RPILCITREEVEFYCNHHGIEYKTDHTNFL 190

Query: 197 DRFERVRVR 205
           + + R ++R
Sbjct: 191 EIYTRNKIR 199


>gi|88705811|ref|ZP_01103520.1| tRNA(Ile)-lysidine synthase [Congregibacter litoralis KT71]
 gi|88699882|gb|EAQ96992.1| tRNA(Ile)-lysidine synthase [Congregibacter litoralis KT71]
          Length = 422

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             + VA SGG DS  LL A H    DR        A+  +H L+  A+    +    C +
Sbjct: 16  GQLFVAYSGGLDSTVLLHAAHKTCPDR------LVALHANHGLQAEARRWQAHCEAFCEQ 69

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +A +          +G+ AAAR+ARY    +  +     +++ AH  DDQ ET+ +R 
Sbjct: 70  LGVAFASTELSLEPAGSGMEAAARDARYRWFED--RIGRGGVLLMAHHQDDQAETLLLRL 127

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G  L+GM           + RP L   R  ++ +  +  +SW EDPSN D RF
Sbjct: 128 LRGAGPDG--LAGMPQHRALGAGS-LLRPLLSLPRRALKEYAEESGLSWVEDPSNGDMRF 184

Query: 200 ERVRVRRFV 208
           +R  +RR V
Sbjct: 185 DRNYLRREV 193


>gi|294140020|ref|YP_003555998.1| tRNA(Ile)-lysidine synthase [Shewanella violacea DSS12]
 gi|293326489|dbj|BAJ01220.1| tRNA(Ile)-lysidine synthase [Shewanella violacea DSS12]
          Length = 467

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 13/186 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +++A SGG DS  L + L      R   + ++  + V H L + A     +V    SR
Sbjct: 29  AKLVLAYSGGVDSELLALGLSEFA--RQHHEYRYLLVHVHHGLSDNAD---AWVGHCESR 83

Query: 80  LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             +    +S K    ++ P+  + A AR ARY  I       +A  ++TAH  DDQLETV
Sbjct: 84  ATVYGLPISIKRVVVDTGPRKSVEAEARNARYNAIKSQMAPGDA--LLTAHHLDDQLETV 141

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R    K  GLS M  + ++  +  + RP L   RE I +      +    D SN+
Sbjct: 142 LLALKRGLGPK--GLSAMGSSQVFGKDKQLIRPLLSISREQIEAKASAVGLVHINDESNS 199

Query: 196 DDRFER 201
           DD+++R
Sbjct: 200 DDKYDR 205


>gi|126701186|ref|YP_001090083.1| putative ATPase [Clostridium difficile 630]
 gi|254977186|ref|ZP_05273658.1| putative ATPase [Clostridium difficile QCD-66c26]
 gi|255094515|ref|ZP_05323993.1| putative ATPase [Clostridium difficile CIP 107932]
 gi|255308593|ref|ZP_05352764.1| putative ATPase [Clostridium difficile ATCC 43255]
 gi|255316267|ref|ZP_05357850.1| putative ATPase [Clostridium difficile QCD-76w55]
 gi|255518928|ref|ZP_05386604.1| putative ATPase [Clostridium difficile QCD-97b34]
 gi|255652107|ref|ZP_05399009.1| putative ATPase [Clostridium difficile QCD-37x79]
 gi|260685080|ref|YP_003216365.1| putative ATPase [Clostridium difficile CD196]
 gi|260688738|ref|YP_003219872.1| putative ATPase [Clostridium difficile R20291]
 gi|306521841|ref|ZP_07408188.1| putative ATPase [Clostridium difficile QCD-32g58]
 gi|122973554|sp|Q181G3|TILS_CLOD6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|115252623|emb|CAJ70466.1| transfer RNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Clostridium
           difficile]
 gi|260211243|emb|CBA66771.1| putative ATPase [Clostridium difficile CD196]
 gi|260214755|emb|CBE07452.1| putative ATPase [Clostridium difficile R20291]
          Length = 462

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           I++ +SGG DS+ LL  L+ +  D +   I+  A  ++H +R  E  KD + YVS +C  
Sbjct: 22  IVLGLSGGPDSVCLLHVLNRLKKDFN---IEIYAAHLNHQIRGIEAQKDAL-YVSKLCED 77

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + I   V S    K        L   AR+ RY +  E    I A  I   H  +DQ ETV
Sbjct: 78  MGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLNDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+   I Y  +  I RP L   R +I  +    N++   D +N 
Sbjct: 138 MMRIMR-----GTGLKGL-KGIDYIRDNCIIRPILDVERNEIEEYCEAYNLNPRIDKTNL 191

Query: 196 DDRFERVRVR 205
           ++ + R ++R
Sbjct: 192 ENIYTRNKIR 201


>gi|315023607|gb|EFT36611.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer RA-YM]
 gi|325336103|gb|ADZ12377.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Riemerella anatipestifer RA-GD]
          Length = 427

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 18  YPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSD 75
           Y  H  L+AVSGG+DSM L   +  + +       K     +++ LR E +  +   V +
Sbjct: 18  YNEHQFLLAVSGGADSMVLAHLMKQIDA-------KIEIAHINYKLRSEDSDKDAALVQE 70

Query: 76  VCSRLRIAHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            C +  I      VS K+ KP   +   ARE RY       K  + + ++TAH  +DQLE
Sbjct: 71  FCEKHHILFHCYTVSEKDQKPSGSIQLWARELRYQFFRNIMKNRSLSHLVTAHHLNDQLE 130

Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T  +   R    KG+ G+    + IL        RP L   +E+I  F    +I++ ED 
Sbjct: 131 TFIINLSRGSGIKGLAGIPNNENEIL--------RPLLDFSKEEIYHFAEAHSIAFREDK 182

Query: 193 SNTDDRFERVRVRRFV 208
           SN    + R ++R  V
Sbjct: 183 SNQKQDYLRNKIRHSV 198


>gi|88801375|ref|ZP_01116903.1| putative cell-cycle protein [Polaribacter irgensii 23-P]
 gi|88782033|gb|EAR13210.1| putative cell-cycle protein [Polaribacter irgensii 23-P]
          Length = 436

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 21/214 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DS+ L   L ++  D +     F+   ++  L      +  +V ++   L 
Sbjct: 21  LLIAISGGLDSVVLTRLLSTLKFDITLAHCNFNLRGIESNL------DAIFVEELAKELA 74

Query: 82  IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +     S+K  K     +     AAR  RY    E +   +   I+TAH  DD LET  +
Sbjct: 75  VKCFSTSFKTEKLAKEKKESTQIAARNLRYHWFQEISARHHFDYILTAHHADDNLETFLI 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G GL+G   T +  ++  + RP L+  RE+I  F  + NI W ED SN   
Sbjct: 135 NLTR-----GTGLAGF--TGIPPVHGNVIRPLLQFSREEILHFAKENNICWREDQSNAST 187

Query: 198 RFERVRVRR----FVRDIDLHALYLKMKKFQDLR 227
           ++ R ++R      ++DI+ + L    K  ++L+
Sbjct: 188 KYLRNKIRHKILPVLKDINPNMLASFSKTLENLQ 221


>gi|126697179|ref|YP_001092065.1| ATPase [Prochlorococcus marinus str. MIT 9301]
 gi|126544222|gb|ABO18464.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9301]
          Length = 336

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 20/199 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSDV 76
           ++IL++VSGG DSM LL  ++ +       K+   +ISV   DH   E +      + D 
Sbjct: 33  SNILISVSGGQDSMTLLTLINDL------KKLHNWSISVWHGDHQWHEKSSLYALELKDY 86

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTFD 129
           C    I+ S    + +K        ARE RY  + E AKT+  T        ++T HT  
Sbjct: 87  CEDKNISFSYD--QANKESISSEEKAREWRYKKLCERAKTLLNTNQQKHNIYLLTGHTSS 144

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  ET  +   R       GLS +    L +  +++ RP L   RED + F     I   
Sbjct: 145 DNAETFILNLSR--GSNFAGLSNIESKRLIENQIFLIRPILIFSREDTKQFCNDMKIPVW 202

Query: 190 EDPSNTDDRFERVRVRRFV 208
           EDP+N+D + +R  VR+ +
Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221


>gi|298368794|ref|ZP_06980112.1| tRNA(Ile)-lysidine synthase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282797|gb|EFI24284.1| tRNA(Ile)-lysidine synthase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 430

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 9/184 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS+ LL  L  +     F      A+ V H L   A D   +  D C+RL 
Sbjct: 12  IEVGLSGGLDSVVLLHMLSRLRQQHGF---SLRAVHVHHGLSPNADDWAEFCLDYCNRLS 68

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K  +G+ AAAR  RY + S+    I    +  AH  DDQ+ET  +   R
Sbjct: 69  IPIRIAHVRVKKGNSGIEAAARAERYRVFSDGLSDI----LALAHHQDDQVETFMLAVVR 124

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               + +        +  +  +W  RP L   R D++ +    ++ + ED SN D  + R
Sbjct: 125 GGGLRSLAAMPQQRDLNAETKIW--RPLLPFTRSDLQHYAELHHLDFIEDESNKDSAYLR 182

Query: 202 VRVR 205
             +R
Sbjct: 183 NWLR 186


>gi|313206452|ref|YP_004045629.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer DSM 15868]
 gi|312445768|gb|ADQ82123.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer DSM 15868]
          Length = 424

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 20/196 (10%)

Query: 18  YPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSD 75
           Y  H  L+AVSGG+DSM L   +  + +       K     +++ LR E +  +   V +
Sbjct: 15  YNEHQFLLAVSGGADSMVLAHLMKQIDA-------KIEIAHINYKLRSEDSDKDAALVQE 67

Query: 76  VCSRLRIAHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            C +  I      VS K+ KP   +   ARE RY       K  + + ++TAH  +DQLE
Sbjct: 68  FCEKHHILFHCYTVSEKDQKPSGSIQLWARELRYQFFRNIMKNRSLSHLVTAHHLNDQLE 127

Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T  +   R    KG+ G+    + IL        RP L   +E+I  F    +I++ ED 
Sbjct: 128 TFIINLSRGSGIKGLAGIPNNENEIL--------RPLLDFSKEEIYHFAEAHSIAFREDK 179

Query: 193 SNTDDRFERVRVRRFV 208
           SN    + R ++R  V
Sbjct: 180 SNQKQDYLRNKIRHSV 195


>gi|157962688|ref|YP_001502722.1| tRNA(Ile)-lysidine synthetase [Shewanella pealeana ATCC 700345]
 gi|157847688|gb|ABV88187.1| tRNA(Ile)-lysidine synthetase [Shewanella pealeana ATCC 700345]
          Length = 469

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 60/109 (55%), Gaps = 6/109 (5%)

Query: 94  PQTGLMAAAREARY-ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
           P+  + A AR  RY AL+SE  +     ++MTAH  DDQLETV +  +R    KG  L+ 
Sbjct: 106 PRVSVEAQARTVRYQALLSELEQ---GDVLMTAHHQDDQLETVLLALKRGLGPKG--LAA 160

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           M     ++   W+ RP L   + +I  +  Q NIS  ED SN DD+++R
Sbjct: 161 MGKVQCFEQQHWLIRPLLDFSKVEIEVYAKQHNISHIEDESNFDDKYDR 209


>gi|68535341|ref|YP_250046.1| cell cycle protein MesJ [Corynebacterium jeikeium K411]
 gi|68262940|emb|CAI36428.1| cell cycle protein MesJ [Corynebacterium jeikeium K411]
          Length = 350

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 83/199 (41%), Gaps = 16/199 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            R+    A +   +SGG+DS+ L+   H +L       +K  A+ VDH L+E +    R 
Sbjct: 33  ARAAQVRAGVAAGLSGGADSLALV---HGLLRC----GVKVHAVVVDHQLQEGSAQVARQ 85

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +D    L     + +     P  G    AR+ARY  +   A       ++ AHT DD  
Sbjct: 86  AADTALSLGATAEIRTVDVEGPGEG---PARQARYEALGAAAA---GRPLLVAHTADDDA 139

Query: 133 ETVYM---RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           E + +   R     A  GM         +     W+ RP L C R +  +      ++W 
Sbjct: 140 EGMLIGLVRGSGAEAIAGMRSVHTDHAAVAAGAAWLGRPLLNCTRAETEAECRAAGLNWW 199

Query: 190 EDPSNTDDRFERVRVRRFV 208
           EDP N+ D + R R+R  V
Sbjct: 200 EDPHNSSDAYLRSRIRTHV 218


>gi|270308585|ref|YP_003330643.1| PP-loop [Dehalococcoides sp. VS]
 gi|270154477|gb|ACZ62315.1| PP-loop [Dehalococcoides sp. VS]
          Length = 476

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 119/263 (45%), Gaps = 23/263 (8%)

Query: 7   ESVRFFVR--SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E VR +++   LV   + IL+AVSGG DS+ +L  +H + S+  F         ++H LR
Sbjct: 9   ERVRKYIKKQGLVSAGNEILLAVSGGPDSVCMLYIMHKLSSEMGF---SLRLAHLNHGLR 65

Query: 64  -ETAKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTIN 118
            E ++ +  YV+++   L +      +S K  K +  L    AARE RYA +   A    
Sbjct: 66  GEESERDAAYVAELADNLGLPLCQQKISVKAYKDEHHLSTEEAAREMRYAFLCRTAAEHG 125

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRR 174
           A  +   HT DD +ETV +   R    +  GL G+   +  D+     L + RP L   R
Sbjct: 126 AAAVAVGHTIDDNIETVMLHLVRGSGTR--GLQGLRSVVGRDIAGAGCLRVIRPLLSLSR 183

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNN 232
            + +S+  +  +S  +D +N      R R+R  V    L  L      F++  LR     
Sbjct: 184 AETQSYCREAGLSPVQDATNQSTEPLRNRIRLEV----LPMLRAINPAFEETILRTAFIA 239

Query: 233 AVAMLIPKYLTVHMRSIIAISQD 255
              M +   +T  M++ + I QD
Sbjct: 240 GEEMALLDEVTSQMKAELVIRQD 262


>gi|328954659|ref|YP_004371992.1| tRNA(Ile)-lysidine synthetase [Coriobacterium glomerans PW2]
 gi|328454983|gb|AEB06177.1| tRNA(Ile)-lysidine synthetase [Coriobacterium glomerans PW2]
          Length = 510

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 26/202 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD-------RSFGKIKFSAISVDHCLRETAKD-EVRYV 73
           +++ VSGG+DS  LL+   +   D        S  + +   + V+H LR +A D +  +V
Sbjct: 30  VVLMVSGGADSTALLLMACTSKLDIDDGCGRASIARNRLHVLHVNHHLRGSASDGDEAFV 89

Query: 74  SDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYA--------LISEHAKTINATLIM 123
            ++C RL +   V   S ++   +  L AAAR+ RYA        L+ E      +  I 
Sbjct: 90  RELCRRLGVPVCVEHASLRDLGGRN-LEAAARDVRYAAARRYLKELVEEAGCPRRSARIA 148

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAHT +D+ ET +M + R     G G+SG+  +I    NL I RP +    E+++ +L  
Sbjct: 149 TAHTANDRAETFFMNAIR-----GSGISGL-SSIPRRRNL-IVRPLIDRTHEELQRYLEV 201

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
             + W ED SN D  F R  VR
Sbjct: 202 AGLRWREDESNRDTSFLRNYVR 223


>gi|224283823|ref|ZP_03647145.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140977|ref|ZP_07803170.1| tRNA(Ile)-lysidine synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133487|gb|EFR51104.1| tRNA(Ile)-lysidine synthase [Bifidobacterium bifidum NCIMB 41171]
          Length = 372

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 7/176 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L      V +  S+G I+  A+ VDH L+E + +  +  +  C  L 
Sbjct: 45  VLVACSGGRDSMALAAVAGIVCA--SWG-IRCGAVVVDHRLQEHSDEVAQSAARRCCGLG 101

Query: 82  IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +VV  + S    G+ AAAR+ARY  +++ A+  +A  ++ AHT DDQ ETV M   
Sbjct: 102 LDPVTVVPVEVSGDGHGVEAAARDARYRALADTARRESAACVLLAHTGDDQAETVLMDVL 161

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R        L+GM   +  D  +  +RPFLR  R D         I+W +DP+N D
Sbjct: 162 RSSGLD--SLAGMPRIVERD-GVRFARPFLRLTRADTTGICEDLGITWWDDPTNGD 214


>gi|170768385|ref|ZP_02902838.1| tRNA(Ile)-lysidine synthase [Escherichia albertii TW07627]
 gi|170122489|gb|EDS91420.1| tRNA(Ile)-lysidine synthase [Escherichia albertii TW07627]
          Length = 431

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 9/194 (4%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVS 74
           L+    ILVA SGG DS    + LH ++  R     +   AI V H L   A   V +  
Sbjct: 9   LLSSRQILVAFSGGLDST---VLLHQLVQWRMENPGVTLRAIHVHHGLSANADAWVMHCE 65

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET
Sbjct: 66  NICQQWQVPLVVERVQLAEEGLGIEAQARQARYQAFAH--TLLPGEVLVTAQHLDDQCET 123

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R     G  LS M +   +     I RP L   R ++  +  +  + W ED SN
Sbjct: 124 FLLALKRGSGPAG--LSAMGEVSDFAGTQLI-RPLLARTRGELELWAHEHGLRWIEDESN 180

Query: 195 TDDRFERVRVRRFV 208
            DD ++R  +R  V
Sbjct: 181 QDDTYDRNFLRLHV 194


>gi|260663744|ref|ZP_05864632.1| cell cycle protein [Lactobacillus fermentum 28-3-CHN]
 gi|260551795|gb|EEX24911.1| cell cycle protein [Lactobacillus fermentum 28-3-CHN]
          Length = 449

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 12/206 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  SP+ S RFF  S      ++VAVS G DSM LL  L ++   R   + +     V+H
Sbjct: 8   MERSPLGS-RFFSSSNT----LVVAVSTGVDSMVLLDLLQNLPKLR---RPRLIVAHVNH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119
            LR  +  E  ++   C +  +   V  W  ++ P  G+ AAAR  RY+  +       A
Sbjct: 60  HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             + TAH  DD  ETV M+  R    + +G               + RP L   ++D+R 
Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
           +     ++W ED +N D    R RVR
Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVR 202


>gi|239993621|ref|ZP_04714145.1| cell cycle protein MesJ [Alteromonas macleodii ATCC 27126]
          Length = 441

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 8/181 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL    +V++ R        A+ V H L + A+   ++    C    
Sbjct: 31  LVVAYSGGVDSTVLL---QAVIAYREQFDSPIHAVHVHHSLSDNAEQWAKHCELQCRLED 87

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +A H      ++  +  L A AR+ RY  + E    I   L++  H  +DQLETV ++ +
Sbjct: 88  VAFHLYRVDVDTGSRKSLEAEARKVRYNALLEVCDQIGGVLLLGQHA-EDQLETVLLQLK 146

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G  L+GM + + Y  +  I RP L   + +I ++  +  + W ED SN  + F+
Sbjct: 147 RGAGPQG--LAGMGE-VQYRGDTLIMRPMLALEKAEIVAYAEEEMLQWVEDESNQQNSFD 203

Query: 201 R 201
           R
Sbjct: 204 R 204


>gi|189220437|ref|YP_001941077.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4]
 gi|189187295|gb|ACD84480.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4]
          Length = 307

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 13/188 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +L  +SGG DS   ++ LHS++     GK     +   H  R+  + + + V +   
Sbjct: 19  PDAVLCGISGGVDS---IVLLHSLVET---GKRPI-VLHFQHGWRQDEESDAKLVEETAK 71

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L +    +  K+ +      A AR  RY      A+  N   ++ AH  DDQ+ET  M+
Sbjct: 72  ELGV--EFLKGKSPRALPKNEAMARMQRYRFFQSAAENKNCFNLVLAHHADDQVETFLMQ 129

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +G G+    D I     L + RP L   + DI  F  QRN  W ED +N +  
Sbjct: 130 LIRGTGSRGWGM----DRITTLGKLVVYRPLLDFWKSDIIRFAQQRNFRWREDETNENTH 185

Query: 199 FERVRVRR 206
             R R+R+
Sbjct: 186 LLRNRIRK 193


>gi|325981478|ref|YP_004293880.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212]
 gi|325530997|gb|ADZ25718.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212]
          Length = 450

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 21/212 (9%)

Query: 8   SVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +VR  + + + P  H+ VA+SGG DS+ LL AL S+  +     +  SA+ ++H +   A
Sbjct: 15  NVRNTLLAHIKPGDHLAVALSGGVDSVVLLHALASLSREI---PLTLSAVHINHGISSNA 71

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMT 124
               ++   +C    I+   +++   K +TG  L A ARE RY + S+    I+A  ++ 
Sbjct: 72  TLWSKFCCHLCHSYGIS-IYIAYLKIKKETGESLEAKAREERYRVFSQ----IHANYVVL 126

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-----TILYDLNLWISRPFLRCRREDIRS 179
           A   DDQ ET+ ++  R     G G+ G+C       +       I RP L   R++I S
Sbjct: 127 AQHLDDQAETLLLQLLR-----GAGIKGLCGMPPVRKLSSPAIPQILRPLLEISRDEIES 181

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
           +     ++W +D SN    F R  +R  +  I
Sbjct: 182 YGRLNKLNWIKDESNDSIIFNRNFLRHEILPI 213


>gi|261417161|ref|YP_003250844.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373617|gb|ACX76362.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328185|gb|ADL27386.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 393

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 53/242 (21%)

Query: 1   MFLSPIESVRF--FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS- 57
           M L+ +E++R   F R       +L+AVSGG DS+ L    H  + + +   I++  I+ 
Sbjct: 1   MSLNLVENIRHHGFKR-------LLLAVSGGLDSICLA---HYFIENSAALGIEWLGIAH 50

Query: 58  VDHCLRE-TAKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARY 107
           V H LRE TA  + ++V +       +H V          + KN+  +  L   AR+ARY
Sbjct: 51  VHHGLREGTADRDAKFVEEFAK----SHDVPFFLKKLDGEALKNA--EGSLEENARDARY 104

Query: 108 ALISEHA-----KTINAT-----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
             + E A     ++ N              I+TAH   DQ ET+YMR +R     G+   
Sbjct: 105 KALVEIALNKKWRSRNGVRDDIEEGGVTIAIVTAHHAGDQAETMYMRLKRGTTLAGLRGI 164

Query: 152 GMCDTILYDLNL--------WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
                I  D +L        ++ RPFL   R+++ ++  +  +SWCED SN D +F R +
Sbjct: 165 QEVRIIQDDTSLVSRLSSLVFLYRPFLNVTRKELLTYARENGLSWCEDESNADVKFARNK 224

Query: 204 VR 205
           +R
Sbjct: 225 IR 226


>gi|261338173|ref|ZP_05966057.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093]
 gi|270276810|gb|EFA22664.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093]
          Length = 287

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 12/180 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA SGG DS+ L  A  +V +  S+G ++  A+ VDH +++ + +     +  C+ L 
Sbjct: 47  ILVACSGGRDSLALAAAARTVCT--SWG-LRCGAVIVDHSMQQGSAEVAARAAKQCADLG 103

Query: 82  IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   +V      PQT    G  AAAR+ RY  I+  A    A  ++ AHT +DQ ETV +
Sbjct: 104 LEPVIVERIVLDPQTMRQRGSEAAARQMRYETITRVAGRTGAEAVLLAHTRNDQAETVLI 163

Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                    GM  +GM + T + D+ L   RP L   R D         + + +DP+N +
Sbjct: 164 NLLTSGGLDGM--AGMPERTQIADVALL--RPLLDLTRADTTQICESLGLEFWDDPTNGE 219


>gi|257487064|ref|ZP_05641105.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 445

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 70/156 (44%), Gaps = 6/156 (3%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             AI V H L+  A     +   VC  L +A  +V   N  P   +  AAR+ARY   ++
Sbjct: 57  LHAIHVHHGLQAAANAWPEHCRRVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +     +++T    DDQ ET+  R  R    +G  L+ M D  +      + RP L  
Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRG--LAAMPDQRILGRGH-LVRPLLAV 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            R ++  +  Q  + W EDPSN D RF R  +R  V
Sbjct: 171 SRVELEGYAHQHGLHWVEDPSNDDSRFSRNFLRSDV 206


>gi|197361444|ref|YP_002141080.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197092920|emb|CAR58349.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 403

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 27/296 (9%)

Query: 51  IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110
           +   AI + H L   A   VR+   VC R ++   V     +    G+ A AREARY   
Sbjct: 16  VTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERMTLADNGLGIEAHAREARYRAF 75

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           ++    +   ++ TA   DDQ ET  +  +R     G  LS M +   +   L + RP L
Sbjct: 76  AQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAG--LSAMGERSPFAGTL-LLRPLL 130

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           R  R+ +  + ++  + W ED SN DD ++    R F+R   L AL L  +++      V
Sbjct: 131 RETRKTLEQWAVRHGLCWIEDESNQDDAYD----RNFLR---LRALPLLQRRWPHFPAAV 183

Query: 231 NNAVAM------LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA----AICGGQIS 280
             +  +      L+ + L   +   I  ++  L +   +L   +R +A     +      
Sbjct: 184 ARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLSPLMLMSDVRRAAILRRWLAMRNAP 242

Query: 281 LPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR-RANFLWITRAVRNLPTLILYP 332
           +P   ++ER+   +   +     C+  G   I R ++   WI        T +++P
Sbjct: 243 MPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQHETTVVWP 298


>gi|227824811|ref|ZP_03989643.1| hypoxanthine phosphoribosyltransferase [Acidaminococcus sp. D21]
 gi|226905310|gb|EEH91228.1| hypoxanthine phosphoribosyltransferase [Acidaminococcus sp. D21]
          Length = 350

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++ A SGG+DS+ L   +     +     +      V H LR E A ++ R+VS  C   
Sbjct: 24  VIAACSGGADSLTLTDIMAKAAEEDD---VTVLVAHVHHHLRGEEADEDARFVSAFCKDR 80

Query: 81  RIAHSV--VSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            ++++   +  +  K + GL    AAR  RY  +  + K + A  I  AH  DDQ ET+ 
Sbjct: 81  DLSYTQFDIDPQALKEKEGLSLEDAARRLRYEALETYRKKVGAQGIFVAHHEDDQAETIL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   R    +  GL GM       +N +I+RPFL   R+D+ ++  +  +S+  D +N +
Sbjct: 141 MNLVRGTGTR--GLRGML-----PVNGYIARPFLAATRKDMETYCKEEGLSYRTDSTNGN 193


>gi|184154695|ref|YP_001843035.1| cell cycle protein [Lactobacillus fermentum IFO 3956]
 gi|183226039|dbj|BAG26555.1| cell cycle protein [Lactobacillus fermentum IFO 3956]
 gi|299782818|gb|ADJ40816.1| Cell cycle protein [Lactobacillus fermentum CECT 5716]
          Length = 449

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 12/206 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  SP+ S RFF  S      ++VAVS G DSM LL  L ++   R   + +     V+H
Sbjct: 8   MERSPLGS-RFFSSSNT----LVVAVSTGVDSMVLLDLLQNLPKLR---RPRLIVAHVNH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119
            LR  +  E  ++   C +  +   V  W  ++ P  G+ AAAR  RY+  +       A
Sbjct: 60  HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             + TAH  DD  ETV M+  R    + +G               + RP L   ++D+R 
Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
           +     ++W ED +N D    R RVR
Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVR 202


>gi|83319710|ref|YP_424013.1| hypothetical protein MCAP_0014 [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283596|gb|ABC01528.1| conserved hypothetical protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 401

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 108/216 (50%), Gaps = 15/216 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A+SGG DS+ LL  +  ++  ++          V++  R  + ++ + V ++C +  +
Sbjct: 13  LLAISGGPDSVFLLCNIVKIIDSKNL-----VVCHVNYNFRSDSINDQKIVINLCKKFDL 67

Query: 83  AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              +++     S  +    + AR  RY   ++ AK      ++ AH F+D +ET  ++ Q
Sbjct: 68  KLEILNINKDYSLLKENFESWARFQRYDFFNKIAKKYQIYNLLVAHNFNDLIETYLLQLQ 127

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R+      GL     T+ +  +L + RP L  ++ +I  +L    IS+  D +NTD +++
Sbjct: 128 RNNLVDYYGLK----TVSHYKDLVVYRPLLDIKKSEILDYLKTNQISYAIDSTNTDIKYQ 183

Query: 201 RVRVRRFVRD---IDL-HALYLKMKKFQDLRVKVNN 232
           R ++R  + +   ID+ + + +  KK + ++  VNN
Sbjct: 184 RNKIRSIIDESIFIDIKNQIDIDNKKLETIKKIVNN 219


>gi|70728575|ref|YP_258324.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5]
 gi|68342874|gb|AAY90480.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5]
          Length = 438

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 10/186 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L  +        +  SA+ + H L+  A     +    C  L + 
Sbjct: 23  VAFSGGLDSTVLLHLLAGLAQHHRLPPL--SAVHIHHGLQAAADAWPEHCQAFCDALGVP 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+          L  AAREARY   +    T +  +++TA   DDQ ET+  R  R  
Sbjct: 81  LQVLR-VQVPAGASLERAAREARYGAFAR--LTASGEVLLTAQHRDDQAETLLFRLLRGA 137

Query: 144 AEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
             +G  LS M  +  L D  L   RP L   R +++ +  +  +SW EDPSN D ++ R 
Sbjct: 138 GVRG--LSAMPSERPLGDGQL--LRPLLDVSRAELQCYAAEHQLSWVEDPSNADHQYSRN 193

Query: 203 RVRRFV 208
            +R  V
Sbjct: 194 YLRHQV 199


>gi|51894334|ref|YP_077025.1| cell cycle protein [Symbiobacterium thermophilum IAM 14863]
 gi|61217236|sp|Q67JG9|TILS_SYMTH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51858023|dbj|BAD42181.1| cell cycle protein [Symbiobacterium thermophilum IAM 14863]
          Length = 482

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 123/278 (44%), Gaps = 39/278 (14%)

Query: 6   IESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR +V    ++ P   ++VAVSGG DS+ L   L+ +       ++      +DH L
Sbjct: 4   LDRVREYVVRHGMLEPGDRVIVAVSGGPDSLALTHVLYRLAP---AWRLSLHLFHLDHGL 60

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTIN 118
           R E ++ +  +V+D+   L +  + V+ +  + +     L   AR  RYA ++  A  I 
Sbjct: 61  RGEASRADAAFVADLARELSLPLTTVTLRPGELEAMRGSLEDNARRRRYAEMARLAAAIG 120

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A    T H  +DQ ETV MR  R       GL+G+   +  +  L I RP L   R++I 
Sbjct: 121 AQRAATGHNRNDQAETVLMRLLRGSGS--TGLAGI-PPVRREGGLTIIRPLLGASRQEIL 177

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           ++     ++   D +N    FER R+R       L  L    ++F D    V+N      
Sbjct: 178 AYCRAHGLTPRMDATNLQGDFERNRIR-------LEILPALTERFGD--AVVDN------ 222

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
                      +A + D+L  +  LL  L R + A CG
Sbjct: 223 -----------LAQTADLLREEDRLLAELTREACARCG 249


>gi|332140486|ref|YP_004426224.1| cell cycle protein MesJ [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550508|gb|AEA97226.1| cell cycle protein MesJ [Alteromonas macleodii str. 'Deep ecotype']
          Length = 441

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 139/327 (42%), Gaps = 34/327 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS    + L +V+  R        A+ V H L E A    R+    C    
Sbjct: 31  LVVAYSGGVDSS---VLLQAVIEYREQYNGPIHAVHVHHGLSENADSWARHCELQCRLED 87

Query: 82  IA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +    H V    ++  +  + A AR+ RY  +    K I   L++  H  +DQLETV ++
Sbjct: 88  VEFHLHRVEV--DTSARKSIEAEARKVRYNALLAVCKRIGGVLLLGQHA-EDQLETVLLQ 144

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    +G  L+GM + + Y  N  I RP L   + +I +F     + W +D SN  + 
Sbjct: 145 LKRGAGPQG--LAGMGE-VQYRGNTLIMRPMLSLDKAEIVTFADNEMLQWVDDESNQQNS 201

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH---MRSIIAISQD 255
           F+    R F+R+  +  L   + ++  L   V  + A+   +   V+    R      + 
Sbjct: 202 FD----RNFLRNEIIPHL---LDRWPQLTKTVGRSAALCAEQSELVNDSAQRYFEDCKRT 254

Query: 256 ILNIDSTLLFYLLRVSAAI-------CGGQISLPGYRSMERVMLFLKSGKRGCVSIG--- 305
            L +D   L  L R   A+         GQ+S P     E+V+L L++       +    
Sbjct: 255 NLRLDGKKLTSLSRPWQAMVIRAWFKAQGQLS-PSKAQAEQVLLMLEAKHDATPEVNFKW 313

Query: 306 RVVIDRRANFLWITRAVRNL-PTLILY 331
             VI    +  W+  AV +  P+ +L+
Sbjct: 314 GKVIRFDGDLYWVVNAVHDAEPSGVLH 340


>gi|257125521|ref|YP_003163635.1| tRNA(Ile)-lysidine synthetase [Leptotrichia buccalis C-1013-b]
 gi|257049460|gb|ACV38644.1| tRNA(Ile)-lysidine synthetase [Leptotrichia buccalis C-1013-b]
          Length = 497

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 24/196 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCS 78
           IL+A SGG DS+ L   L      + F K   I+ S + ++H LR   ++++++V    +
Sbjct: 32  ILIAFSGGPDSVFLYYFL------KFFKKKLEIEVSIVYINHNLRSDVENDLQFVKKFAA 85

Query: 79  RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I + + S   +K     +  +  AARE RY  I    K IN   I T H  DD +ET
Sbjct: 86  ENNIDYYIESINVNKYAKEKKKSVELAARELRYEAIENIRKMINYDKIATGHNLDDNVET 145

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
              R  R     G  LSG+        N  I RP L   + +I  FL   N  +  D +N
Sbjct: 146 FIFRLLR-----GTSLSGLRSIPKVREN--IIRPILEFEKSEILDFLKNENQDYIIDYTN 198

Query: 195 TDDRFERVRVRRFVRD 210
            ++ +     R F+R+
Sbjct: 199 NENNY----TRNFIRN 210


>gi|299771517|ref|YP_003733543.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. DR1]
 gi|298701605|gb|ADI92170.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. DR1]
          Length = 418

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L+  + +  + V++  +RL I   +   K       L A AR+ARY    
Sbjct: 8   KIRAIYIDHQLQSQSAEWGKLVAEQATRLDIPFIIQ--KVQVTDGNLEAQARQARYQAYR 65

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169
           +H +  N TL++ AH   DQ ETV +R        G G+ G+    ++ Y +++ I RPF
Sbjct: 66  QHLQP-NETLVL-AHHQQDQAETVILR-----LLSGAGVDGLAAMQSVDYRVDMTIWRPF 118

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           L   RE I  +  Q  I +  DP+N D  ++R   R 
Sbjct: 119 LDLSREQIADWTTQLEIEYVNDPTNYDIHYDRAWSRE 155


>gi|220934352|ref|YP_002513251.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995662|gb|ACL72264.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 419

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 7/200 (3%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +R  +R L   + ++VA SGG DS    + LH+  + R  G  +  AI V H L   A  
Sbjct: 8   LRDALRHLPPASRLIVAFSGGLDSH---VLLHAAAALRGVGFPELRAIHVHHGLNPRADA 64

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            V +   VC  L +   V+   ++ P  G    A   R    +  A  +    ++TAH  
Sbjct: 65  WVEHCGQVCEDLGVELRVIH-VDASPADGESPEAAARRVRYAALEAALLPGDGLLTAHHQ 123

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            DQ ET+ ++  R     G+        +      W  RP L   RE +        ++W
Sbjct: 124 RDQAETLLLQLLRGSGPAGLAAMPRWQPLGAG---WHGRPLLEVSREVLEGHARDHGLAW 180

Query: 189 CEDPSNTDDRFERVRVRRFV 208
            ED SN D RF+R  +R  +
Sbjct: 181 IEDDSNRDTRFDRNLLRERI 200


>gi|50365488|ref|YP_053913.1| lysidine synthetase [Mesoplasma florum L1]
 gi|61216500|sp|Q6F0E4|TILS_MESFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50364044|gb|AAT76029.1| lysidine synthetase [Mesoplasma florum L1]
          Length = 398

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 18/188 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVC-- 77
           LVAVSGG DSM +L  L          K+    I V H     RE +  + + V D C  
Sbjct: 13  LVAVSGGPDSMFMLNEL---------IKMNIKEIVVCHVNYNFREDSWKDQKLVEDFCLK 63

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L++   +++   SK +    + AR  RY    E +K  N   ++ AH  +D +ET  +
Sbjct: 64  NNLKLEKLIINQDYSKLKENFESWARNIRYDFFVEISKKYNIQNVLIAHNRNDLVETFLL 123

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R    K  GL+    T  Y   + I RP L   + +I   L + NI++  D +N D 
Sbjct: 124 QQDRKGYVKHYGLNK---TSTYK-EITIVRPMLNILKSEILKSLKEENIAFVIDSTNEDK 179

Query: 198 RFERVRVR 205
           +++R ++R
Sbjct: 180 KYKRNKIR 187


>gi|257783916|ref|YP_003179133.1| tRNA(Ile)-lysidine synthetase [Atopobium parvulum DSM 20469]
 gi|257472423|gb|ACV50542.1| tRNA(Ile)-lysidine synthetase [Atopobium parvulum DSM 20469]
          Length = 489

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)

Query: 49  GKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMA---- 100
            K +   + V+H LRE   D +  +V + C  L I  +V+     K ++ + G +     
Sbjct: 24  AKERLHVLHVNHLLREDDADADQHFVQETCDSLDIPCTVLRADVAKLARERDGNVEEIGR 83

Query: 101 -----AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD 155
                AARE    L +E   +     I+TAHT DD+ ET  M   R     G G+SG+  
Sbjct: 84  RVRYDAARELAQKLCAEQGVSRQKAKILTAHTADDRTETFMMNVMR-----GSGMSGL-- 136

Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           T +      I RP L    E ++ +L  RN+ W ED +NTD  + RV +R  V
Sbjct: 137 TSIPRHRGLIYRPLLNYTHEQLKDWLKARNLDWHEDATNTDTHYLRVYMRHNV 189


>gi|302187915|ref|ZP_07264588.1| PP-loop [Pseudomonas syringae pv. syringae 642]
          Length = 445

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +  +AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPAL--NAIHVHHGLQPAADAWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     +P   +  AAR+ARY+  S+  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVR-VQVEPGASIEQAARKARYSAFSQ--RLAEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R  +  +  +  ++W +DPSN D +F R  
Sbjct: 145 GVRG--LAAMPDRRVLGRGH-LLRPLLDVSRMQLEDYARRHGLNWIDDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|238061469|ref|ZP_04606178.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. ATCC 39149]
 gi|237883280|gb|EEP72108.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. ATCC 39149]
          Length = 336

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 9/120 (7%)

Query: 87  VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146
           VS +   P+    AAAREARY  + E A+   A  ++T HT DDQ ETV +   R    +
Sbjct: 67  VSGRPGGPE----AAAREARYQALVEAARRHGAAALLTGHTRDDQAETVLLALARGAGPR 122

Query: 147 GMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
             GL+GM      DL  + + RP L   RE+ R       ++  EDP N D  + R RVR
Sbjct: 123 --GLAGMPPR--RDLCGVPLLRPLLDVSREETRKACAALGLTPWEDPHNADASYARARVR 178


>gi|255023939|ref|ZP_05295925.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +LVAVSGG DS+ LL   H + +     K       ++H LRE A +E   V   C R  
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSDLVQKEAIYVAHLNHHLRENAANEQNVVETFCERHG 80

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I    +  +    Q G+   AR  RY    +     N   +  AH  DDQ+ET+ M
Sbjct: 81  IPLYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I ++  +  +++  D SN   
Sbjct: 141 RLVRGSA--SIGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDESNASQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|256846174|ref|ZP_05551632.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_36A2]
 gi|256719733|gb|EEU33288.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_36A2]
          Length = 446

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    + G  L    RE RY   SE  K + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  R     G  L G+    + + N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FKLIR-----GTSLQGLEGIKVKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|313611247|gb|EFR86027.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL F2-208]
          Length = 271

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +LVAVSGG DS+ LL   H + +     K       ++H LRE A +E   V   C R  
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSDLVQKEAIYVAHLNHHLRENAANEQNVVETFCERHG 80

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I    +  +    Q G+   AR  RY    +     N   +  AH  DDQ+ET+ M
Sbjct: 81  IPLYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I ++  +  +++  D SN   
Sbjct: 141 RLVRGSA--SIGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDESNASQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|124021791|ref|YP_001016098.1| ATPase [Prochlorococcus marinus str. MIT 9303]
 gi|123962077|gb|ABM76833.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9303]
          Length = 343

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 134/305 (43%), Gaps = 46/305 (15%)

Query: 20  AHILVAVSGGSDSM---GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           A +L+AVSGG DSM   GLLI L      R  G         DH   + +      + D 
Sbjct: 33  ASLLIAVSGGQDSMALLGLLIDL-----QRKHG-WSLEVWHGDHNWHQQSATIATELKDW 86

Query: 77  CSRLRIAHSVVSWKN-SKP-QTGLMAAAREARYALISEHAKTINAT-------LIMTAHT 127
           C     AH++  W + +KP QT   A AR  RY  ++ H + +++         ++T HT
Sbjct: 87  CE----AHNLSFWSDQAKPGQTNNEATARHWRYEQLTLHTERLSSNNPNHPCRYVLTGHT 142

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQR 184
             D+ ET+ +   R     G+     C  I  D    N+ + RP L   RED      + 
Sbjct: 143 SSDRAETLLLNLARGADLAGLSSMRQCRPISKDNPRKNVQLIRPLLGFSREDTAQICSEL 202

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNN------AVAML 237
           ++    DP+N++  F R RVR+ V  + L +L+     +   L  ++N+      A+AML
Sbjct: 203 SLPIWLDPANSNPDFSRNRVRQEVLPV-LESLHPGCSLRIAALAERLNHHHADQQAIAML 261

Query: 238 IPKYLTVHMRSIIAISQDILNID----STLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
               L+   +      QD+  +     +TLL Y L+ S     G  SLP  + +E++   
Sbjct: 262 ALNNLS---KQNGLCRQDLAQLPITARTTLLAYWLKRS-----GAPSLPAVQ-LEQISQS 312

Query: 294 LKSGK 298
           +  GK
Sbjct: 313 IGPGK 317


>gi|255657510|ref|ZP_05402919.1| putative ATPase [Clostridium difficile QCD-23m63]
 gi|296452818|ref|ZP_06894505.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Clostridium difficile NAP08]
 gi|296879930|ref|ZP_06903902.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07]
 gi|296258366|gb|EFH05274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Clostridium difficile NAP08]
 gi|296429044|gb|EFH14919.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07]
          Length = 462

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           I++ +SGG DS+ LL  L+ +  D +   I+  A  ++H +R  E  KD + YVS +C  
Sbjct: 22  IVLGLSGGPDSVCLLHVLNRLKKDFN---IEIYAAHLNHQIRGIEAQKDAL-YVSKLCED 77

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + I   V S    K        L   AR+ RY +  E    I A  I   H  +DQ ETV
Sbjct: 78  MGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLNDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+   I Y  +  I RP L   R +I  +    N++   D +N 
Sbjct: 138 MMRIMR-----GTGLKGL-KGIDYIRDNCIIRPILDVERSEIEEYCEAYNLNPRIDKTNL 191

Query: 196 DDRFERVRVR 205
           ++ + R ++R
Sbjct: 192 ENIYTRNKIR 201


>gi|313902544|ref|ZP_07835945.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM
           13965]
 gi|313467230|gb|EFR62743.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM
           13965]
          Length = 632

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 84/198 (42%), Gaps = 37/198 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD------ 75
           +LVAVSGG DSM LL  L  +      G        VDH LR  +  + R+V +      
Sbjct: 39  VLVAVSGGRDSMVLLDVLDRLRP--VLGLAALGVAHVDHGLRPDSAGDARWVEEQAAARG 96

Query: 76  ---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C R+ I     S         L   AR ARY  ++  A+   A  +  AH   DQ 
Sbjct: 97  LPFLCRRVHIRPGRRS---------LEEGARLARYRALAAMARQFGAQRVALAHHAGDQA 147

Query: 133 ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLR----CRREDIRSFLLQRNIS 187
           ETV MR     A  G+ GL+GM          W   PF+R         + ++   R + 
Sbjct: 148 ETVLMRL---LAGAGVRGLAGMP---------WRRGPFVRPLLATEPALLAAYAAARGLG 195

Query: 188 WCEDPSNTDDRFERVRVR 205
           W +DPSN D  F R R+R
Sbjct: 196 WRDDPSNQDLTFLRNRIR 213


>gi|294784705|ref|ZP_06749993.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 3_1_27]
 gi|294486419|gb|EFG33781.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 3_1_27]
          Length = 446

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    + G  L    RE RY   SE  K + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  R     G  L G+    + + N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FKLIR-----GTSLQGLEGIKVKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|227494492|ref|ZP_03924808.1| tRNA(Ile)-lysidine synthetase [Actinomyces coleocanis DSM 15436]
 gi|226832226|gb|EEH64609.1| tRNA(Ile)-lysidine synthetase [Actinomyces coleocanis DSM 15436]
          Length = 366

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 16/180 (8%)

Query: 21  HILVAVSGGSDSMGLLIA----LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           H +VA SGG+DS+ L +A     H +  D       F+A+ VDH LR  +  E   V+  
Sbjct: 38  HWVVACSGGADSLALTVATADWCHRLNKD-------FTAVIVDHQLRSESAAEAASVAAD 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETV 135
               +I   VV     +   G+ A AREARY  + +   T+N  T ++  HT DDQ ETV
Sbjct: 91  LIANKIPAVVVK-AQVRAGQGIEAQAREARYQALVDFCNTLNQPTAVLVGHTQDDQAETV 149

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSN 194
            ++  R    K   L+GM         +   RPFL   RR     F     + + +DP+N
Sbjct: 150 LLKLARGAGMK--ALAGMPQQWRNPQGIKFHRPFLAEIRRRQTEEFCNCLGLEYVQDPTN 207


>gi|187918640|ref|YP_001884206.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia hermsii DAH]
 gi|119861488|gb|AAX17283.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia hermsii DAH]
          Length = 439

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 23/211 (10%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ IES  F+ ++ +     +VA SGG+DS  LL+ L   L++         A    H +
Sbjct: 8   VTKIES--FYFKNSLPKGKSIVAFSGGADSTTLLLGLKEYLNN------NIVAFYFAHYI 59

Query: 63  RETAKD--EVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHA 114
           R   +   E+ ++   C+      +I    V  K    Q G+     AR+ RY  + E  
Sbjct: 60  RPEFEQNLEIEHIKKFCNFHNITFQIKRCSVDIKRESSQLGMSVEELARKYRYNALLEAL 119

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  I  AH  +DQ ET+ MR       +G  L G   + +  +N  I RP L   R
Sbjct: 120 KENEARYIALAHNKNDQFETLVMR-----FFQGSFLDGF--SGIPIINGNIIRPLLEVSR 172

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           E+I  FL   NI +  D +N +D + R R+R
Sbjct: 173 EEIEQFLSLNNIVYFVDSTNHEDLYLRNRIR 203


>gi|255323491|ref|ZP_05364622.1| tRNA(Ile)-lysidine synthase [Campylobacter showae RM3277]
 gi|255299528|gb|EET78814.1| tRNA(Ile)-lysidine synthase [Campylobacter showae RM3277]
          Length = 328

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 18/186 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S G DS  L   L           +KF    VD+ +R  +KDEV    D+ ++   
Sbjct: 16  LLAFSHGVDSTALFYLLDEA-------GVKFDLAIVDYNVRAQSKDEVASARDLAAKFNK 68

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V S +    ++     AR ARY    +  +      ++ AH FDD+ E   M+  R 
Sbjct: 69  QIYVKSVRLG--ESNFEHEARAARYEFFGQICREQGYENLILAHQFDDKFEWFLMQLGR- 125

Query: 143 YAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               G GLS   GM +    + +  I+RP L  R+ ++  FL +RN+ +  D +N  D+F
Sbjct: 126 ----GAGLSELLGMQELETRE-DYVIARPLLGVRKCELERFLRERNLKYFTDETNLTDQF 180

Query: 200 ERVRVR 205
           +R  VR
Sbjct: 181 KRGFVR 186


>gi|291287206|ref|YP_003504022.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884366|gb|ADD68066.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 417

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 22/195 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ LL   H +  +        SA  ++H  R+T+  + ++ +D C +L 
Sbjct: 21  LLVAFSGGKDSVALL---HFLKRNEGIQGYSVSACHINHLFRKTSLWDEKFCADFCEKLS 77

Query: 82  IAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           I    +S++   P      +      AR  RY  +    K  +A L++TAHT +D +ET 
Sbjct: 78  IP--FISYRADVPRYCEVKKMSFEHGARIVRYRALYNAMKHFDAELLLTAHTKNDVVETF 135

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++     +A +G  +  +      D +L+  RP L    E+I  ++ +  I    D +N 
Sbjct: 136 FI-----HAVQGASVFSLKGITERDRDLF--RPMLDISTEEILEYINRYKIKHAVDETNN 188

Query: 196 DDRFERVRVRRFVRD 210
           DD +    +R F+R+
Sbjct: 189 DDSY----LRNFIRN 199


>gi|164686638|ref|ZP_02210666.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM
           16795]
 gi|164604367|gb|EDQ97832.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM
           16795]
          Length = 462

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           I++ +SGG DS+ LL  L+ +   +    I+  A  ++H +R  E  KD + YV+ +C  
Sbjct: 22  IVLGISGGPDSVCLLHILNRL---KEQFDIEIYAAHLNHQIRGIEAQKDAL-YVTRLCEE 77

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + I + V S    K     +  +   AR+ RY +  E  +  +A  I  AH  +DQ ET+
Sbjct: 78  MGIKYFVRSIDVPKYCQENKLSIEDGARKLRYEMFFEIMQRTHANKIAIAHNVNDQAETI 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+   I Y  +  I RP L   R +I S+  Q N++   D +N 
Sbjct: 138 LMRIMR-----GTGLHGL-RGIEYIRDNVIIRPILDIERSEIESYCEQYNLNPRIDQTNL 191

Query: 196 DDRFERVRVR 205
           D  + R ++R
Sbjct: 192 DPIYTRNKIR 201


>gi|34498644|ref|NP_902859.1| cell cycle protein [Chromobacterium violaceum ATCC 12472]
 gi|61216591|sp|Q7NT72|TILS_CHRVO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|34104497|gb|AAQ60855.1| cell cycle protein [Chromobacterium violaceum ATCC 12472]
          Length = 435

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 11/184 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS+ LL  L    + R   +I  SA+ V H L   A     +   +C  LR+ 
Sbjct: 21  VGFSGGLDSVALLSLLCEARARRP--EIGLSAVHVHHGLSPNADAWAAHCQALCDSLRVP 78

Query: 84  HSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             +  V  +    ++ + AAAREARY +    A  +    I  AH  DDQ ET+ ++  R
Sbjct: 79  LRIERVHVRAGGGES-VEAAAREARYQVYRRSASEV----IALAHHQDDQAETILLQLLR 133

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               + +        +     LW  RP L   RE + +++  R  +W +D SN D R+ R
Sbjct: 134 GGGARALAAMPALRELAPGKLLW--RPLLEIPRERLEAYVKARGFAWVDDESNLDTRYRR 191

Query: 202 VRVR 205
             +R
Sbjct: 192 NLLR 195


>gi|260889219|ref|ZP_05900482.1| tRNA(Ile)-lysidine synthase [Leptotrichia hofstadii F0254]
 gi|260861279|gb|EEX75779.1| tRNA(Ile)-lysidine synthase [Leptotrichia hofstadii F0254]
          Length = 450

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 94/197 (47%), Gaps = 26/197 (13%)

Query: 22  ILVAVSGGSDSM---GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           IL+A SGG DS+    LL  + +++S      ++ S   ++H LR   +++++++++  S
Sbjct: 23  ILIAFSGGPDSVFLYHLLDLMKNMIS------LEISIAYINHNLRYDVENDLKFINEFAS 76

Query: 79  RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +  + H + S    K     +  +  AARE RY  I    K I    I T H  DD +ET
Sbjct: 77  KNNVNHYIESINVKKYAAENKKSVELAARELRYETIENIRKKIGYNKIATGHNLDDNVET 136

Query: 135 VYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
              R  R  +  G+ G+  + + I+        RP L   + +I SFL  +N  +  D +
Sbjct: 137 FIFRLLRGTSVTGLKGIPRVRENIV--------RPILDFEKSEILSFLRSKNYQYLVDYT 188

Query: 194 NTDDRFERVRVRRFVRD 210
           N ++ +     R F+R+
Sbjct: 189 NNENDY----TRNFIRN 201


>gi|315924895|ref|ZP_07921112.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621794|gb|EFV01758.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 486

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V VSGG DSM LL   H + +      I   A  V+H +R E A+ +  +V+  C+  
Sbjct: 39  VIVGVSGGIDSMALL---HFLWTHADALGIAVMAGHVNHRIRGEAAEGDQTFVTQWCADH 95

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    A + V     + +  L  A R AR        +   A  I  AH  DDQ ETV 
Sbjct: 96  GIPALTAAADVPLTAKERKISLETAGRLARRRCFERWQRQTGAAKIALAHHLDDQAETVL 155

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M     +  +G G+ G     +  +     RPFL+ RRE I ++   + +   ED +N  
Sbjct: 156 M-----HLIRGAGIRGAAG--MRPVAGAFVRPFLQVRREAIEAYAAAQQLPHVEDATNAS 208

Query: 197 DRFERVRVRRFV 208
           D F R R+R  V
Sbjct: 209 DAFMRNRLRHQV 220


>gi|34763208|ref|ZP_00144172.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27887118|gb|EAA24225.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 446

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    + G  L    RE RY   SE  K + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  R     G  L G+    + + N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FKLIR-----GTSLQGLEGIKVKNNN--IIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|15896451|ref|NP_349800.1| cell cycle protein MesJ-like protein [Clostridium acetobutylicum
           ATCC 824]
 gi|61216713|sp|Q97EB0|TILS_CLOAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15026275|gb|AAK81140.1|AE007816_4 Cell cycle protein MesJ ortholog, ATPase of the PP-loop superamily
           [Clostridium acetobutylicum ATCC 824]
 gi|325510609|gb|ADZ22245.1| ATPase of the PP-loop superamily [Clostridium acetobutylicum EA
           2018]
          Length = 461

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+VAVSGG DS+ LL  L   L D+    I   A  V+HC+R E A  +  YV   C +L
Sbjct: 21  IVVAVSGGPDSICLLHILFK-LKDKFNTSI--CAAHVNHCIRGEAADKDEEYVKKFCEKL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    V+    + +     A RE RYA   E  +   A  I  AH  +DQ ET+ 
Sbjct: 78  DIQFYVKRVDVNKIAHEKKISSEMAGREIRYAFFEEVKERFKANKIAIAHNANDQAETIM 137

Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           MR  R    +G+ G+  + D        +  RP +  RR  I  +     +    D +N 
Sbjct: 138 MRIIRGTGTEGIKGIRPVRDG-------YYIRPLIEIRRSSIEKYCEDEKLMPRIDATNL 190

Query: 196 DDRFERVRVR 205
           +  + R ++R
Sbjct: 191 ERDYNRNKIR 200


>gi|227502055|ref|ZP_03932104.1| tRNA(Ile)-lysidine synthetase [Corynebacterium accolens ATCC 49725]
 gi|227077210|gb|EEI15173.1| tRNA(Ile)-lysidine synthetase [Corynebacterium accolens ATCC 49725]
          Length = 297

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 36/202 (17%)

Query: 22  ILVAVSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCL----RETAKDEVRYV 73
           + V +SGG+DS+ L  A+    H V+           A+ VDH L    RE A+      
Sbjct: 5   VGVGLSGGADSLALCAAMIAEGHDVI-----------ALCVDHGLQDGSREQAEKAAWQA 53

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAH 126
             + +R R+   +V     +    L A AR+ARY  +S  A+   A+        I  AH
Sbjct: 54  ESLGARARV---LVVRVPEEAGNSLEAVARQARYQAMSAAAREDGASRRGGGPLEIAVAH 110

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ET+ + + R        ++GM +  + +    + RPFL+ RR D      +  +
Sbjct: 111 TADDQAETLLLGALRGR------VAGMPERAVVE-GARVVRPFLQVRRADTEGACAELGL 163

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
              +DP N D  F RV +RR +
Sbjct: 164 DVWQDPQNADTDFRRVALRREI 185


>gi|333025315|ref|ZP_08453379.1| putative tRNA(Ile)-lysidine synthetase [Streptomyces sp. Tu6071]
 gi|332745167|gb|EGJ75608.1| putative tRNA(Ile)-lysidine synthetase [Streptomyces sp. Tu6071]
          Length = 386

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 15/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G I+   ++VDH L+E +      V+   + LR
Sbjct: 87  VLVACSGGADSMALASAL--AFEAPRLG-IRAGGVTVDHRLQEGSGRRAAEVAARLTALR 143

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    A +V   +   P+     A   A  A+  EH     A  I+  HT DDQ ETV +
Sbjct: 144 LTPVEAVAVDVGRAGGPEAAAREARYAALDAVAEEH----GAAAILLGHTRDDQAETVLL 199

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +   LSGM +  +        RPFLR  R+  R   + +++   +DP NTD 
Sbjct: 200 GLARGSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTARKACMVQSLPVWDDPHNTDP 255

Query: 198 RFERVRVR 205
            + R R+R
Sbjct: 256 AYTRSRLR 263


>gi|313848263|emb|CBY17264.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|328914942|gb|AEB55775.1| MesJ/Ycf62 family protein, putative [Chlamydophila psittaci 6BC]
          Length = 297

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 19/188 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR--- 79
           L+A+SGGSDS+ LL  L      +S G + F+A+ VD+  RE++  E   +   C     
Sbjct: 6   LLALSGGSDSLFLLYLL------KSRG-VSFTAVHVDYGWRESSYREAEELKLRCQEEGV 58

Query: 80  -LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            L + H     K SK P+     AAR  RY L  +  +  N   I  AH  +DQ ETV  
Sbjct: 59  PLIVNHVPSKDKTSKDPEN----AARRYRYELFYKICREENLAGIFLAHHANDQAETVLK 114

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R     A  G  L GM     Y+  + + RP L   ++ +   L   NI +  D +NTD+
Sbjct: 115 RVLEG-AHLG-NLKGMTSEASYN-GIPLLRPLLHIPKQILIHTLDAENIPYVHDVTNTDE 171

Query: 198 RFERVRVR 205
           R+ R R+R
Sbjct: 172 RYLRARMR 179


>gi|227514335|ref|ZP_03944384.1| tRNA(Ile)-lysidine synthetase [Lactobacillus fermentum ATCC 14931]
 gi|227087307|gb|EEI22619.1| tRNA(Ile)-lysidine synthetase [Lactobacillus fermentum ATCC 14931]
          Length = 449

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 12/206 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  SP+ S RFF  S      ++VAVS G DSM LL  L ++       + +     V+H
Sbjct: 8   MERSPLGS-RFFSSSNT----LVVAVSTGVDSMVLLDLLQNLPK---LKRPRLIVAHVNH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119
            LR  +  E  ++   C +  +   V  W  ++ P  G+ AAAR  RY+  +       A
Sbjct: 60  HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             + TAH  DD  ETV M+  R    + +G               + RP L   ++D+R 
Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
           +     ++W ED +N D    R RVR
Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVR 202


>gi|315274600|ref|ZP_07869470.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120]
 gi|313615770|gb|EFR89028.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120]
          Length = 648

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H +   +   K   S   ++H LRE A  E + V   C +  
Sbjct: 24  LLVAVSGGPDSLALL---HFLWESKLIPKEAISVAHLNHHLRENAAKEQQLVEIFCKQHN 80

Query: 82  I---AHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +      V   K ++  Q G+   AR  RY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  LPFYTEEVDVKKQAQVLQKGIEETARIVRYDFFEKIMAEQNINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R      +G SG+           I RPFL   + +I  +  + ++++  D SNT  
Sbjct: 141 RLVR--GSSSIGWSGIQPKREVKGGYAI-RPFLPITKAEIIEYAHKHSLAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|296274393|ref|YP_003657024.1| tRNA(Ile)-lysidine synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296098567|gb|ADG94517.1| tRNA(Ile)-lysidine synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 324

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 26/197 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR- 81
           L+A SGG DS  L   L +         I F    V++  RE +KDEV Y  ++ ++   
Sbjct: 12  LLAFSGGIDSSALFFLLLN-------ENIPFDIAIVNYNQREQSKDEVAYAKELANKYNK 64

Query: 82  ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              +  +V++       +     AR+ RY    +  K  +   ++TAH  +D+LE   M+
Sbjct: 65  KCFLKEAVLT-----NNSNFEKEARDIRYDFFDKIIKEYDYDTLITAHQLNDKLEWFMMQ 119

Query: 139 SQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                  KG GL    G+ +    D N  I RP L   +E+++ FL + N  +  D SN 
Sbjct: 120 -----LSKGAGLVELIGLEEKTQKD-NYVIYRPLLELSKEELQIFLQKNNHKYFIDESNY 173

Query: 196 DDRFERVRVRR-FVRDI 211
           D++++R   R+ FV ++
Sbjct: 174 DEKYKRNYFRKNFVNEL 190


>gi|83644690|ref|YP_433125.1| ATPase [Hahella chejuensis KCTC 2396]
 gi|83632733|gb|ABC28700.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Hahella chejuensis KCTC 2396]
          Length = 445

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 130/329 (39%), Gaps = 49/329 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + +A SGG DS  LL A     + R++  K +  AI V H L   A     +    C  L
Sbjct: 31  LFIAYSGGLDSSVLLHA-----ARRAWPAKTQIEAIHVHHGLSPNADAWAEHCQKECQSL 85

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYAL----ISEHAKTINATLIMTAHTFDDQLETVY 136
            +A              L AAAREARY +    +SEHA  +    ++  H  +DQ ET+ 
Sbjct: 86  DVACHAHHVSVMAVGDSLEAAAREARYRVFERYLSEHADAV----LLQGHHQNDQAETIL 141

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  + +  KG+       T+   +   + RP L   R ++ +   +  +SW ED SN D
Sbjct: 142 FRLLKGHGVKGLAGIPRQRTLGKGI---LRRPLLDFTRLELEALAQRWGLSWVEDESNVD 198

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI------- 249
             F+R               +L+ +  + +  +  NAVAM+      +   S        
Sbjct: 199 AVFDRN--------------FLRNEILRPMSARWRNAVAMIAETGRRMSEASSLLDELAE 244

Query: 250 IAISQDILNIDSTLLFYL-----------LRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
           I +  + ++ D   L  L           LR      G   S      +   ML  +  +
Sbjct: 245 IDLQGETVSADELELAVLSGLSPHRRKNVLRYWLQAAGLTPSESDLAEILAQMLHAEGSR 304

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPT 327
           + C S+G  V+ R    L++T A+   P+
Sbjct: 305 QPCYSLGESVLRRHDGKLYLTEAIDAPPS 333


>gi|66800145|ref|XP_628998.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4]
 gi|60462365|gb|EAL60586.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4]
          Length = 665

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 17/204 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHS-VLSDRSFG---KIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +++ VSGGSDSM LL  L +  + + S     K+K + I++DH +     +++ Y+S + 
Sbjct: 173 LVIGVSGGSDSMVLLYLLKNWCIGENSANVNRKLKITVITIDHKMTNPVAEDIPYISKII 232

Query: 78  SRL----------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           ++L          +I H VV     + +  +  + R  R  ++   +      LI     
Sbjct: 233 NQLINNDNNSNFIKIKHKVVEIDEQRCKQQV--SLRNQRIEILMSESVGNGNNLIFYGTN 290

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ+ET   R  ++    G+        I    ++ + RP L   + +I  F  +R+I 
Sbjct: 291 LNDQMETFIQRINKNSGLDGLAAMTKITKISNTHSVLLVRPLLDFSKLEILDFCSERSIQ 350

Query: 188 WCEDPSNTDD-RFERVRVRRFVRD 210
           +  DP+N D   + R + R  +RD
Sbjct: 351 YFNDPTNDDPVSYSRNKTRHQLRD 374


>gi|160916165|ref|ZP_02078372.1| hypothetical protein EUBDOL_02192 [Eubacterium dolichum DSM 3991]
 gi|158431889|gb|EDP10178.1| hypothetical protein EUBDOL_02192 [Eubacterium dolichum DSM 3991]
          Length = 404

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 16/190 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL         R  G +      V++  RE+A  +++ V D C +  I
Sbjct: 11  IIGVSGGPDSMALLDMC------RRHG-VSMVVAHVNYQKRESAARDMQIVQDYCKQYGI 63

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR--SQ 140
           A   V  +N +      A AR+ RYA      +  +A  ++ AH  DD +ET  M+  ++
Sbjct: 64  A-CEVYMQNKQCTYNFQAFARDVRYAFYRSLCEIYHAQGVLLAHQMDDHIETYLMQKETK 122

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R  +  G+   G+       L + + RP L   ++ +  +  Q  + +  D SN  D + 
Sbjct: 123 RLGSYYGIRKKGIV------LGVKVYRPLLTKSKKQLEEYCAQHGVEYGIDESNLSDDYA 176

Query: 201 RVRVRRFVRD 210
           R R+R  V D
Sbjct: 177 RNRMRHHVVD 186


>gi|29347003|ref|NP_810506.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|61216643|sp|Q8A7D1|TILS_BACTN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29338901|gb|AAO76700.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 426

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           +LVA+SGG+DS+ LL  LH+           F      H   E +  + R+V  +C    
Sbjct: 22  LLVALSGGADSVALLRVLHTAGYQCEAAHCNF------HLRGEESNRDERFVRQLCQKYG 75

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            RL I     +   ++ +  +  AARE RY    +  +   A +I  AH  DD +ET+  
Sbjct: 76  IRLHITDFNTTQYATEKRISIEMAARELRYNWFEKIKEECGAHVIAVAHHQDDSVETMLF 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+    +   N  I RP L   RE+I  +L Q    +  D +N +D
Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGAIVRPLLCINREEIIRYLQQIGQDFVTDSTNLED 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|156935294|ref|YP_001439210.1| hypothetical protein ESA_03151 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533548|gb|ABU78374.1| hypothetical protein ESA_03151 [Cronobacter sakazakii ATCC BAA-894]
          Length = 434

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +LVA SGG DS    + LH ++  R +  +++  AI V H +   A     +    C R
Sbjct: 14  QLLVAYSGGLDST---VLLHQLVRLRETHPELRLRAIHVHHGISPNADRWAAHCQAHCHR 70

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   +   + ++   GL A AR+ARY      A  +    ++TA   +DQ ET+ +  
Sbjct: 71  WQVPFELAYVELAQDGLGLEAQARKARYQAFE--AALLPGEALVTAQHLNDQCETLLLAL 128

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G  L+ M   + +  ++ + RP L   R  + ++  +  + W +D SN DDRF
Sbjct: 129 KRGSGPAG--LAAMPAELPFADSV-LLRPLLNTPRAQLEAWASRHQLVWIDDESNEDDRF 185

Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223
           +    R F+R   L AL  +   F
Sbjct: 186 D----RNFLRLHILPALEARWPHF 205


>gi|26988340|ref|NP_743765.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida KT2440]
 gi|61216636|sp|Q88MG3|TILS_PSEPK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|24983090|gb|AAN67229.1|AE016350_2 cell cycle protein MesJ, putative [Pseudomonas putida KT2440]
          Length = 427

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L      R+       AI + H L+  A     +   +C    + 
Sbjct: 15  VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  + S P   L  AAR+ARYA   +        ++ T    DDQ ET+  R  R  
Sbjct: 73  LQVIHVQVS-PGASLEQAARDARYAAFRQVLGP--GDILFTGQHRDDQAETLLFRLLR-- 127

Query: 144 AEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
              G GL G+        L   +L   RP L C R+ ++ +   + ++W EDPSN D +F
Sbjct: 128 ---GAGLRGLAAMPGQRALGQGSL--VRPLLACSRQHLQEYAQAQGLTWIEDPSNVDTQF 182

Query: 200 ERVRVRRFV 208
            R  +R  V
Sbjct: 183 ARNYLRGEV 191


>gi|329943107|ref|ZP_08291881.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci Cal10]
 gi|332287689|ref|YP_004422590.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci 6BC]
 gi|325506432|gb|ADZ18070.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci 6BC]
 gi|328814654|gb|EGF84644.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci Cal10]
          Length = 317

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 91/199 (45%), Gaps = 19/199 (9%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  +L      L+A+SGGSDS+ LL  L S         + F+A+ VD+  RE++  E  
Sbjct: 15  FFSALDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESSYREAE 67

Query: 72  YVSDVCSR----LRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   C      L + H     K SK P+     AAR  RY L  +  +  N   I  AH
Sbjct: 68  ELKLRCQEEGVPLIVNHVPSKDKTSKDPEN----AARRYRYELFYKICREENLAGIFLAH 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +DQ ETV  R     A  G  L GM     Y+  + + RP L   ++ +   L   NI
Sbjct: 124 HANDQAETVLKRVLEG-AHLG-NLKGMTSEASYN-GIPLLRPLLHIPKQILIHTLDAENI 180

Query: 187 SWCEDPSNTDDRFERVRVR 205
            +  D +NTD+R+ R R+R
Sbjct: 181 PYVHDVTNTDERYLRARMR 199


>gi|309787133|ref|ZP_07681745.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae 1617]
 gi|308924711|gb|EFP70206.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae 1617]
          Length = 415

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +A SGG DS    + LH ++  R+    +   AI V H L   A   V +  +VC + ++
Sbjct: 1   MAFSGGLDST---VLLHQLVQWRTENPGVVLRAIHVHHGLSANADAWVTHCENVCQQWQV 57

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET  +  +R 
Sbjct: 58  PLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQCETFLLALKRG 115

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               G  LS M +   +     I RP L   R ++  + L   + W ED SN DD ++R
Sbjct: 116 SGPAG--LSAMAEVSEFAGTRLI-RPLLARTRGELAQWALAHGLRWIEDESNQDDSYDR 171


>gi|255073925|ref|XP_002500637.1| predicted protein [Micromonas sp. RCC299]
 gi|226515900|gb|ACO61895.1| predicted protein [Micromonas sp. RCC299]
          Length = 204

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 10/184 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++ VSGG DS+ LL   H ++  R    +    +  +H  R  +++E  +V D+ ++L 
Sbjct: 23  VVLCVSGGVDSVALL---HLMVELRQEWALDLHILHFNHGKRAESREEEAFVKDLGAKLG 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +   +G  A AR  R     +    +   +I+  H  DDQ ETV M+  R
Sbjct: 80  VEVHVRRPTKAFDTSGFQAKARAWRRDEAEKLLDAVAGQVILQGHHADDQTETVLMKMMR 139

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  +S +        N    RP L   ++++R +L  R + W ED SN D  F R
Sbjct: 140 -----GCHVSNIAGMSHRAGN--YGRPLLDVSKDELRRYLTSRALEWREDASNADVAFLR 192

Query: 202 VRVR 205
            RVR
Sbjct: 193 NRVR 196


>gi|90580988|ref|ZP_01236789.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14]
 gi|90437866|gb|EAS63056.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14]
          Length = 438

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 98  LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
           L  AAREARY ++++H       +++TA   DDQ+ET  +  +R     G+    M    
Sbjct: 100 LEQAAREARYNILAQHVNM--GDMLLTAQHSDDQIETFLLALKRGSGPAGLAAMPMILPF 157

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
              ++L   RP L   R DI  + L+  +SW ED SN D+R++R  +R  +
Sbjct: 158 AKGMHL---RPLLNITRADIEQYGLEHKLSWVEDESNQDERYDRNFIRHQI 205


>gi|160947239|ref|ZP_02094406.1| hypothetical protein PEPMIC_01172 [Parvimonas micra ATCC 33270]
 gi|158446373|gb|EDP23368.1| hypothetical protein PEPMIC_01172 [Parvimonas micra ATCC 33270]
          Length = 457

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 30/196 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM +L   +    +    K+       +H LR+ A  + ++V   C +  
Sbjct: 19  VLLAVSGGKDSMIMLDLFNYFKYEL---KLNLVVCHFNHSLRDDADRDEKFVKTQCEKYG 75

Query: 82  IA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +        V+ + N + +      AR  RY    E  +  N   I TAH  +D  ETV 
Sbjct: 76  LKFYSKKEDVLLYSN-ENKLSTEEGARFLRYKFFDEVKRIENLEYIATAHNKNDLAETVI 134

Query: 137 MRSQRDYAEKGMGLSGMC-------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           MR  R     G G++G+        D I         RP L   R++I  ++ + NI + 
Sbjct: 135 MRILR-----GTGINGLIGIQSERGDLI---------RPILNFSRDEIEKYIEENNIPFV 180

Query: 190 EDPSNTDDRFERVRVR 205
           ED +N ++ + R ++R
Sbjct: 181 EDKTNFEELYLRNKIR 196


>gi|159040239|ref|YP_001539492.1| tRNA(Ile)-lysidine synthetase [Salinispora arenicola CNS-205]
 gi|189035970|sp|A8M8I3|TILS_SALAI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157919074|gb|ABW00502.1| tRNA(Ile)-lysidine synthetase [Salinispora arenicola CNS-205]
          Length = 333

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 4/154 (2%)

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHA 114
           ++VDH L+E +      V D      +A    +    S+   G  AAAREARY  ++E A
Sbjct: 59  VTVDHGLQEGSARRATAVVDWAHTAGLAPVEAIRVDVSERPGGPEAAAREARYQALTEAA 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             + A  ++T HT DDQ ETV +   R    +  GL+GM  T  +     + RP L   R
Sbjct: 119 GRLGAAALLTGHTRDDQAETVLLALARGAGPR--GLAGM-PTRRWLGEALLLRPLLEVSR 175

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           E  R+      ++   DP NTD  + R RVR  V
Sbjct: 176 EQTRAACTALGLAPWTDPHNTDPAYARARVRSEV 209


>gi|207855754|ref|YP_002242405.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206707557|emb|CAR31831.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 403

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 51  IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110
           +   AI + H L   A+  VR+   VC+R ++   V     +    G+ A AREARY   
Sbjct: 16  VTLRAIHIHHGLSPHAESWVRHCETVCARWQVPLVVERVTLADNGLGIEAHAREARYRAF 75

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           ++    +   ++ TA   DDQ ET  +  +R     G  LS M +   +   L + RP L
Sbjct: 76  AQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAG--LSAMGERSPFAGTL-LLRPLL 130

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           R  R+ +  + ++  + W ED SN DD ++R
Sbjct: 131 RETRKTLEQWAVRHGLCWIEDESNQDDAYDR 161


>gi|301309867|ref|ZP_07215806.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3]
 gi|300831441|gb|EFK62072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3]
          Length = 438

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 153/362 (42%), Gaps = 74/362 (20%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           I ++R ++   R L     +LV +SGG+DS+ LL  L          ++ +  I++ HC 
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51

Query: 62  --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             LR  E+ +DE  +  +    L     +I    +S+   K    +  AARE RYA   E
Sbjct: 52  FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGEK-HLSIEMAARELRYAWFEE 109

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             + +    I  AH  DD +ETV M   R     G G+ GM    +   N +I RP L  
Sbjct: 110 MRERLGGQAIAVAHHRDDNVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162

Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            REDI ++L  +  ++  D +N  D     F R+ V   + +I+  A     +  + L  
Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273
               + A  I  Y+    R  + +S D L+I +        T+L+ LL+       VS  
Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276

Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332
           I       PG        LF  S         R++ DR  ++LWIT   +    T +L P
Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITSLEKKEERTFVLDP 320

Query: 333 EE 334
           E+
Sbjct: 321 EK 322


>gi|254432047|ref|ZP_05045750.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001]
 gi|197626500|gb|EDY39059.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001]
          Length = 359

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 17/200 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM L+  L  +   R            DH  R  + D+ R +        
Sbjct: 38  LLVAVSGGQDSMALVALLRDL---RRLHGWTLHLWHGDHGWRPASGDQARQLQAWAEAEG 94

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  S+  W+         A+AR  RYA +   A  + AT ++T HT  D+ ET      R
Sbjct: 95  LPFSLARWEQPVQDE---ASARSWRYASLLARATALGATRVVTGHTASDRAETFLFNLAR 151

Query: 142 DYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               +G+G    L  +  T++      ++RP L   R D         +    D  N+D 
Sbjct: 152 GSHRRGLGSLRPLRPLGGTVM------LARPLLGFGRADTARLCGALQLPVWPDAGNSDP 205

Query: 198 RFERVRVRRFVRDIDLHALY 217
           RF R R+R  V  + L AL+
Sbjct: 206 RFSRNRLRGEVLPV-LEALH 224


>gi|256852015|ref|ZP_05557402.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661416|ref|ZP_05862329.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii 115-3-CHN]
 gi|282933687|ref|ZP_06339045.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1]
 gi|297205113|ref|ZP_06922509.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii JV-V16]
 gi|256615427|gb|EEU20617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547871|gb|EEX23848.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii 115-3-CHN]
 gi|281302177|gb|EFA94421.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1]
 gi|297149691|gb|EFH29988.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii JV-V16]
          Length = 412

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 18/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA S G DS+ L+  L +         ++      DH +R+ +  E   +   C +  
Sbjct: 20  IIVACSAGPDSLALVDMLKN-------WPLRLIVAHFDHQIRQDSYLETELLEQYCKQNE 72

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V  W+N++ +T   AAAR+ARY+ +   AK   A  ++TAH  DD LE + ++  R
Sbjct: 73  LPLYVKKWENNQNKTE--AAARKARYSFLLALAKEKQADYLLTAHHGDDYLENIILKLIR 130

Query: 142 --DYAE-KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             D AE   +   G  + +       + RP L   + ++  +LL +++++  D +N  + 
Sbjct: 131 SGDPAEMSSLQAVGQMEGVK------LVRPLLYYSKSELTKYLLDKHLAFITDETNLTNE 184

Query: 199 FERVRVRR 206
             R R+R 
Sbjct: 185 NLRNRIRH 192


>gi|229825875|ref|ZP_04451944.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC
           49176]
 gi|229789895|gb|EEP26009.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC
           49176]
          Length = 477

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 137/321 (42%), Gaps = 57/321 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           I+  VSGG+DS+ LL+ L  +L+  +       A+ ++H +R  E A+DE  +V  +C +
Sbjct: 36  IVAGVSGGADSVCLLLVLKDILNPENI-----VAVHINHGIRGEEAARDE-EFVKKLCEK 89

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
               L I H  +   + K +     A R  RY +  E  +  NA  I  AH  +D  ET 
Sbjct: 90  YNICLEIRHLSIPEYSKKHKISEEEAGRILRYEVFEEIRQEKNADKIAVAHNMNDTAETF 149

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G G++G+  T +   N  I RP ++  R++I         ++  D +N 
Sbjct: 150 LLNLSR-----GSGITGL--TGIKISNSRIIRPLIKTSRDEIEKIAEYYGEAFITDSTNN 202

Query: 196 DDRFERVRVR------------RFVRDIDLHALYL-------------KMKKFQDLR--V 228
              + R R+R            + VR I+  A  L               KK+ D +  +
Sbjct: 203 SLIYARNRIRNKVLPELSQVNEQAVRHINEAADKLGKIEGYLLRESEKAYKKYVDAKETL 262

Query: 229 KVNNAV----AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-- 282
            + NA+    A+LI + L    R++  ++    +I S  + YL  + +   G +I+LP  
Sbjct: 263 LIKNAITEIDAVLIEEVL---HRALTEVAGKARDIGSIHISYLNELFSKQVGREINLPYE 319

Query: 283 --GYRSMERVMLFLKSGKRGC 301
              YR  E V L   + K   
Sbjct: 320 IRAYRDYEGVRLISANNKENA 340


>gi|304312484|ref|YP_003812082.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium
           HdN1]
 gi|301798217|emb|CBL46439.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium
           HdN1]
          Length = 463

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 8/180 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV  SGG DS  +L+ L    S +S   +   A+ V+H L   A    ++  D+C    
Sbjct: 22  LLVGFSGGLDST-VLLYLARRWSLQS--SVPIVAVHVNHQLSAHAFAWQQHCVDLCEAWG 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           IA    +        G+ +AAR ARY +    AK  +  L+   H  DDQ+ET ++R  R
Sbjct: 79  IALHCEAVHVDAHGVGVESAARAARYQVFQRLAKPSDVLLL--GHHRDDQVETFFLRLMR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                 +GL+ M D   +   L I RP L   +  +  F   +  +W ED SN  DR++R
Sbjct: 137 --GSGVLGLASMDDVSEWQ-GLCIVRPLLGLSKSVLHEFAKSQQWTWVEDESNQSDRYDR 193


>gi|261253711|ref|ZP_05946284.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891]
 gi|260937102|gb|EEX93091.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891]
          Length = 435

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 8/184 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++ +SGG DS  +L  L          ++   A+ V H L + A          C  L 
Sbjct: 21  IVLGLSGGLDSRVMLELLAQYAQQY---RVDCLAVHVHHGLSDNADQWAEQCQHWCQSLN 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V           +  +AREARY  + ++  +    L++T    DDQLET  +  +R
Sbjct: 78  VQLVVEKVSLDIEGRSIEESAREARYNALRKYLSS--GDLLLTGQHADDQLETFLLALKR 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG  LS M   + +  +  I RP L   R++I  F    ++ W ED SN D RFER
Sbjct: 136 GSGPKG--LSSMAAVMPF-ASAQIVRPLLSVTRQEIEEFAQSLDLEWVEDESNQDQRFER 192

Query: 202 VRVR 205
             +R
Sbjct: 193 NFIR 196


>gi|220911090|ref|YP_002486399.1| tRNA(Ile)-lysidine synthetase [Arthrobacter chlorophenolicus A6]
 gi|219857968|gb|ACL38310.1| tRNA(Ile)-lysidine synthetase [Arthrobacter chlorophenolicus A6]
          Length = 351

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 88/198 (44%), Gaps = 19/198 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRS---FGKIKFSAISVDHCLRETAKDEVRYVS 74
           YPAH+LVA SGG DSM  L A+ S  + R       +   A+ VDH L+E +    R  +
Sbjct: 11  YPAHVLVACSGGPDSM-ALAAVASYFARRGSIDSHPVTVGAVVVDHQLQEGSG---RVAA 66

Query: 75  DVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           D    LR         H+V          G  AAAREAR+A +   A    A  I+  HT
Sbjct: 67  DTAGALRELGLAPVDVHTVTVAGAG---MGPEAAAREARHAALEAAAADQGAGAILLGHT 123

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ E V +   R    +   L+GM  T     +  + RPFL  RR D         + 
Sbjct: 124 LDDQAEQVLLGLARGSGTR--SLAGMRPTRAGAGSAVLLRPFLGLRRADTEEICEVEELD 181

Query: 188 WCEDPSNTDDRFERVRVR 205
              DP+NTD  F R R R
Sbjct: 182 PWHDPTNTDPAFARSRTR 199


>gi|325856881|ref|ZP_08172379.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A]
 gi|325483254|gb|EGC86231.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A]
          Length = 456

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 41/245 (16%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           LVA+SGG+DS+ LL+ L      +  G  +  A+  +  LR  E+ +DE +Y  ++C R 
Sbjct: 22  LVALSGGADSVCLLLCL------KELG-YRIEAVHCNFHLRGEESQRDE-QYCQELCVRE 73

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    AH       ++ +  +  AAR  RY    +  +T+ A  + T H  +D +ET+ 
Sbjct: 74  NIPLHKAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETLAADAVCTGHHKEDSVETIL 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GL+G+    +      + RP L   R++I  +L  R++S+  D +N  
Sbjct: 134 INLVR-----GTGLNGLMG--IRPRKGGVVRPLLCVTRQEIEQYLRSRSVSFVTDSTNLV 186

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQ 254
           D   R ++R  +           + +  ++   VN+AV       LT   H+  + AI +
Sbjct: 187 DDVVRNKIRLNI-----------LPQLAEINPSVNDAV-------LTAANHLSEVDAIVR 228

Query: 255 DILNI 259
           D LN+
Sbjct: 229 DSLNM 233


>gi|144897902|emb|CAM74766.1| cell cycle protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 167

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 5/128 (3%)

Query: 22  ILVAVSGGSDSMG-LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + VAVSGG+DS+   L+A H V   R        A++VDH LR  +  E   V    +  
Sbjct: 25  LAVAVSGGADSLAATLLAAHWVHERRG----TLVALTVDHRLRPNSTAEAVLVGQWLANH 80

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I H ++ W   KP + +   AR ARY L+ ++ +      ++ AH  DDQ ET  +R  
Sbjct: 81  GIEHHILPWLGDKPVSDIQGRARAARYGLLEQYCRQAGILHLLLAHHRDDQAETFLLRLA 140

Query: 141 RDYAEKGM 148
           R     G+
Sbjct: 141 RGSGVDGL 148


>gi|313668289|ref|YP_004048573.1| hypothetical protein NLA_9780 [Neisseria lactamica ST-640]
 gi|313005751|emb|CBN87205.1| hypothetical protein NLA_9780 [Neisseria lactamica 020-06]
          Length = 445

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 35  VALSGGLDSV---VLLHLLVRAGKKGGFIPEAVHIHHGLSPRADDWADFCQNYCDMLGVR 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 92  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 148 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 205

Query: 204 VR 205
            R
Sbjct: 206 FR 207


>gi|229528754|ref|ZP_04418144.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)]
 gi|229332528|gb|EEN98014.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)]
          Length = 440

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   IL+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKILLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|147674336|ref|YP_001217758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395]
 gi|153817074|ref|ZP_01969741.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457]
 gi|227082366|ref|YP_002810917.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2]
 gi|229507683|ref|ZP_04397188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286]
 gi|262167735|ref|ZP_06035437.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27]
 gi|298500383|ref|ZP_07010188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757]
 gi|172047611|sp|A5F623|TILS_VIBC3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|254789054|sp|C3LPP6|TILS_VIBCM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|126512342|gb|EAZ74936.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457]
 gi|146316219|gb|ABQ20758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395]
 gi|227010254|gb|ACP06466.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2]
 gi|227014138|gb|ACP10348.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395]
 gi|229355188|gb|EEO20109.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286]
 gi|262023800|gb|EEY42499.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27]
 gi|297541076|gb|EFH77130.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757]
          Length = 440

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   IL+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKILLALSGGVDSQ-VLLALLARGRD-EFG-WDVTAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|313625438|gb|EFR95195.1| bifunctional protein TilS/hprT [Listeria innocua FSL J1-023]
          Length = 453

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS  LL   H + S +   K   +   ++H LRE A+ E   V   C    
Sbjct: 24  LLVAVSGGPDSFALL---HFLWSAKLVPKEAIAVAHLNHHLRENAEKEQLAVQTFCEERD 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    V  +  K Q G+   AR  RY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFFIEEVDVKKRAEKLQKGIEETARIIRYGFFEKVMAENNINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R      +G SG+           I RPFL   + +I  +     + +  D SNT  
Sbjct: 141 RLVR--GSSSIGWSGIQPKREVRGGYAI-RPFLPITKAEIIEYANTHTLPYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|327314588|ref|YP_004330025.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289]
 gi|326945281|gb|AEA21166.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289]
          Length = 456

 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 41/245 (16%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           LVA+SGG+DS+ LL+ L      +  G  +  A+  +  LR  E+ +DE +Y  ++C R 
Sbjct: 22  LVALSGGADSVCLLLCL------KELG-YRIEAVHCNFHLRGEESQRDE-QYCQELCVRE 73

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    AH       ++ +  +  AAR  RY    +  +T+ A  + T H  +D +ET+ 
Sbjct: 74  NIPLHKAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETLAADAVCTGHHKEDSVETIL 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GL+G+    +      + RP L   R++I  +L  R++S+  D +N  
Sbjct: 134 INLVR-----GTGLNGLMG--IRPRKGGVVRPLLCVTRQEIEQYLRSRSVSFVTDSTNLV 186

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV--HMRSIIAISQ 254
           D   R ++R  +           + +  ++   VN+AV       LT   H+  + AI +
Sbjct: 187 DDVVRNKIRLNI-----------LPQLAEINPSVNDAV-------LTAANHLSEVDAIVR 228

Query: 255 DILNI 259
           D LN+
Sbjct: 229 DSLNM 233


>gi|169830304|ref|YP_001716286.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637148|gb|ACA58654.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 470

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LV VSGG DS+ LL  L+ +   R+   I  +   ++H LR   A+ + RYV  +  + 
Sbjct: 23  VLVGVSGGPDSVALLDVLYGL---RAVLGISITVAHLNHRLRGAEAEADARYVRKLAEKF 79

Query: 81  RIAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +        V +++ ++ +  +  AARE RY   +  A+   A  +   H  DDQ ET+
Sbjct: 80  GLPCIVEECDVPTFRKAE-RLSIQTAARELRYEFFARAARETGARRVALGHHADDQAETI 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R     G G +G+   I     L+I RP L  RR +I ++   R +    DPSN 
Sbjct: 139 LHHFLR-----GTGPAGLAG-IAPVRGLFI-RPLLGIRRREIEAYCRARGLDPRLDPSNL 191

Query: 196 DDRFERVRVR 205
           D  + R R+R
Sbjct: 192 DPVYTRNRLR 201


>gi|153812536|ref|ZP_01965204.1| hypothetical protein RUMOBE_02935 [Ruminococcus obeum ATCC 29174]
 gi|149831461|gb|EDM86549.1| hypothetical protein RUMOBE_02935 [Ruminococcus obeum ATCC 29174]
          Length = 471

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 28/223 (12%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M+   ++ V+ F+     L   + I++ VSGG DSM +L  L+ +  +  FG  +   + 
Sbjct: 1   MYKDTLQKVKRFMTETGMLQNCSEIILGVSGGPDSMTMLHILNGLRDE--FG-YRLRVVH 57

Query: 58  VDHCLR--ETAKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREAR 106
           V+H +R  E  +D+ + V  +CS  +I  +V         +SWK    + G     R   
Sbjct: 58  VNHGIRGKEALRDQ-QMVEKICSEWKIPCAVYNYDVPALALSWKMGTEEAG--RKVRRIA 114

Query: 107 YALISEHAKTINATL-IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           +    E+A  I   + +  AH  +D  ET+     R     G G+ G+C   L  LN  I
Sbjct: 115 FEKEKENAVAIPEQVRVALAHNQNDMAETMLHHLAR-----GTGIRGLCS--LKPLNGEI 167

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            RP L   R +I +++ + +I    D SN +D + R R+RR +
Sbjct: 168 IRPLLCLERSEIVNYVEENSIQTVLDSSNMEDDYTRNRIRRHI 210


>gi|259501962|ref|ZP_05744864.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus antri DSM 16041]
 gi|259170139|gb|EEW54634.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus antri DSM 16041]
          Length = 467

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 15/208 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            F   ++  RFF +       ++VAVS G DSM +L++L + L   +  +   +   V+H
Sbjct: 15  QFKRHLQGGRFFDKR----DRVVVAVSAGVDSM-VLLSLVTRLP--APLRPTVTVAHVNH 67

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119
            LR  +  E  Y+   C    +   V  W +++ PQTG+  AAR  RY   +E      +
Sbjct: 68  ELRRQSWQEEEYLRQYCRAHDLPLLVKHWPRSAHPQTGIEEAARRFRYHFFAEVMAARQS 127

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDI 177
            +++TAH  +D  ET+ M+  R     G  LS +   + +       + RP L   +E +
Sbjct: 128 PILLTAHHQNDLAETILMKLVR-----GGQLSQLVGINAVRPFTGGRLIRPLLPFSKEQL 182

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205
           R++ +   I W ED +N D    R R R
Sbjct: 183 RAYAVAAGIRWYEDTTNQDLTISRNRYR 210


>gi|307825179|ref|ZP_07655399.1| tRNA(Ile)-lysidine synthetase [Methylobacter tundripaludum SV96]
 gi|307733635|gb|EFO04492.1| tRNA(Ile)-lysidine synthetase [Methylobacter tundripaludum SV96]
          Length = 451

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 10/186 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS  LL    S+    +  K K +A+ V H L+  A+   ++       + + 
Sbjct: 36  IAYSGGVDSHVLLHCCASI----THLKDKLTAVYVHHGLQAEAESWAKHCEKTAKDVGVE 91

Query: 84  HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +    N+ P      AAR ARYA +    K  +A L+  A   +DQLETV ++  R 
Sbjct: 92  FLTLRVNANAAPGESPEEAARNARYAALKSLIKADDALLL--AQHREDQLETVLLQLFRG 149

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +G  LSGM + + +   + + RP L   ++ I  +     +SW EDPSN  + ++R 
Sbjct: 150 SGLRG--LSGMSERMAFGAGVML-RPLLNTPKQAISDYAHAHQLSWVEDPSNQSNDYDRN 206

Query: 203 RVRRFV 208
            +R  V
Sbjct: 207 FLRNAV 212


>gi|257882585|ref|ZP_05662238.1| PP-loop family protein [Enterococcus faecium 1,231,502]
 gi|293563198|ref|ZP_06677654.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1162]
 gi|293570120|ref|ZP_06681200.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1071]
 gi|294618633|ref|ZP_06698172.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1679]
 gi|294623709|ref|ZP_06702542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium U0317]
 gi|257818243|gb|EEV45571.1| PP-loop family protein [Enterococcus faecium 1,231,502]
 gi|291587492|gb|EFF19376.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1071]
 gi|291595152|gb|EFF26490.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1679]
 gi|291596924|gb|EFF28142.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium U0317]
 gi|291604848|gb|EFF34326.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1162]
          Length = 484

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + IL AVSGG DSM LL  L  V   R  G      + ++H LRE + +E  Y+   C  
Sbjct: 34  SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV M+ 
Sbjct: 91  KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +    SG+ +   +     I RP L   +ED+ ++  +  + + ED +N     
Sbjct: 150 VR--GGQLNTFSGIKEVQPFATGRLI-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDI 206

Query: 200 ERVRVRRFV 208
           +R R+R  V
Sbjct: 207 QRNRLRHLV 215


>gi|167039445|ref|YP_001662430.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X514]
 gi|300915475|ref|ZP_07132788.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X561]
 gi|307725230|ref|YP_003904981.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X513]
 gi|166853685|gb|ABY92094.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X514]
 gi|300888535|gb|EFK83684.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X561]
 gi|307582291|gb|ADN55690.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X513]
          Length = 458

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++ VSGG DS+ +L  L+++   +    +K   + V+H +R E AK + ++V D+C +L
Sbjct: 21  IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNHMIRGEAAKRDAQFVEDMCRKL 77

Query: 81  RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           ++   +   K+ K     M      A R  RY    E  K +    I  AH  +D +ETV
Sbjct: 78  KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++   R     G G++G+    +  +N  I RP +   RE+I  +L ++++    D +N 
Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIEKYLKEKDLKPAIDFTNY 189

Query: 196 DDRFERVRVR 205
           +D ++R +VR
Sbjct: 190 EDLYKRNKVR 199


>gi|50086047|ref|YP_047557.1| cell cycle protein [Acinetobacter sp. ADP1]
 gi|61216503|sp|Q6F880|TILS_ACIAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49532023|emb|CAG69735.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ADP1]
          Length = 459

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R  +++  +PA    L+  SGG DSM LL+ L S L        K  AI +DH L+ +++
Sbjct: 19  RLLIQAQQFPADTVFLIGCSGGMDSM-LLLHLMSELFPH-----KVRAIYIDHQLQSSSR 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKP---QTG-LMAAAREARYALISEHAKTINATLIM 123
               +V +   +  I  ++      +P    TG L   AREARYA    H K+ N  L++
Sbjct: 73  AWGVFVQNFAQQSHIPFTI------QPVIVDTGNLENQAREARYAAFESHLKS-NEVLVL 125

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH   DQ ETV +R       KG+   G    I    N+   RP L   R+ I  ++  
Sbjct: 126 -AHHQQDQTETVLLRLLSGSGVKGL---GAMKEIEQKKNICCWRPMLSVSRQQIEHWVEH 181

Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208
             I + +D +N D  ++R   R  V
Sbjct: 182 LKIPYIQDLTNFDTTYDRAWCRETV 206


>gi|256751848|ref|ZP_05492720.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749255|gb|EEU62287.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 458

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++ VSGG DS+ +L  L+++   +    +K   + V+H +R E AK + ++V D+C +L
Sbjct: 21  IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNHMIRGEAAKRDAQFVEDMCRKL 77

Query: 81  RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           ++   +   K+ K     M      A R  RY    E  K +    I  AH  +D +ETV
Sbjct: 78  KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++   R     G G++G+    +  +N  I RP +   RE+I  +L ++++    D +N 
Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIEKYLKEKDLKPAIDFTNY 189

Query: 196 DDRFERVRVR 205
           +D ++R +VR
Sbjct: 190 EDLYKRNKVR 199


>gi|16799328|ref|NP_469596.1| hypothetical protein lin0251 [Listeria innocua Clip11262]
 gi|61216704|sp|Q92F56|TILS_LISIN RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName:
           Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
           Full=Hypoxanthine-guanine phosphoribosyltransferase;
           Short=HGPRT; Short=HGPRTase
 gi|16412680|emb|CAC95484.1| fusion protein, N-terminal part similar to B. subtilis YacA
           protein, C-terminal part similar to hypoxanthine-guanine
           phosphoribosyltransferase [Listeria innocua Clip11262]
          Length = 648

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS  LL   H + S     K   +   ++H LRE A+ E   V   C    
Sbjct: 24  LLVAVSGGPDSFALL---HFLWSANLVPKEAIAVAHLNHHLRENAEKEQLAVQTFCEERD 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    V  +  K Q G+   AR  RY    +     N   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFFIEEVDVKKRAEKLQKGIEETARIVRYDFFEKVMAENNINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R      +G SG+           I RPFL   + +I  +  +  + +  D SNT  
Sbjct: 141 RLVR--GSSSIGWSGIQPKREVRGGYAI-RPFLPITKAEIIEYATKHALPYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|312623036|ref|YP_004024649.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203503|gb|ADQ46830.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 456

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+  SGG DSM LL     +L  +    +  +   ++H LR  A D+ ++V ++C R  
Sbjct: 23  VLIGCSGGVDSMVLL---DCILRLKDKYNLDITVAHLNHMLRPEADDDEKFVIEMCKRYN 79

Query: 82  IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I      V     K + GL    A R ARY+   E A+ +N   I+  H  +D +ET ++
Sbjct: 80  IKCITRKVDVAKLKKEKGLSEEEAGRNARYSFFYEVAEELNIDRILLGHNKNDVVETFFL 139

Query: 138 RSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              R     G GL G+     + D+   I+RP +   RE+I  +    ++ +  D +N  
Sbjct: 140 NLFR-----GSGLEGLASVPPVRDI---IARPLINISREEIEEYAKLNSVPFVVDKTNFS 191

Query: 197 DRFERVRVR 205
            +++R  VR
Sbjct: 192 LKYKRNIVR 200


>gi|69245448|ref|ZP_00603443.1| PP-loop [Enterococcus faecium DO]
 gi|257879859|ref|ZP_05659512.1| PP-loop family protein [Enterococcus faecium 1,230,933]
 gi|257891700|ref|ZP_05671353.1| PP-loop family protein [Enterococcus faecium 1,231,410]
 gi|260559532|ref|ZP_05831713.1| pp-loop family protein [Enterococcus faecium C68]
 gi|314938210|ref|ZP_07845510.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a04]
 gi|314943105|ref|ZP_07849904.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133C]
 gi|314949302|ref|ZP_07852645.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0082]
 gi|314952235|ref|ZP_07855250.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133A]
 gi|314992093|ref|ZP_07857543.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133B]
 gi|314996276|ref|ZP_07861332.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a01]
 gi|68195830|gb|EAN10266.1| PP-loop [Enterococcus faecium DO]
 gi|257814087|gb|EEV42845.1| PP-loop family protein [Enterococcus faecium 1,230,933]
 gi|257828060|gb|EEV54686.1| PP-loop family protein [Enterococcus faecium 1,231,410]
 gi|260074631|gb|EEW62952.1| pp-loop family protein [Enterococcus faecium C68]
 gi|313589520|gb|EFR68365.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a01]
 gi|313593307|gb|EFR72152.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133B]
 gi|313595630|gb|EFR74475.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133A]
 gi|313598164|gb|EFR77009.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133C]
 gi|313642406|gb|EFS06986.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a04]
 gi|313644308|gb|EFS08888.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0082]
          Length = 481

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + IL AVSGG DSM LL  L  V   R  G      + ++H LRE + +E  Y+   C  
Sbjct: 31  SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 87

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV M+ 
Sbjct: 88  KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 146

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +    SG+ +   +     I RP L   +ED+ ++  +  + + ED +N     
Sbjct: 147 VR--GGQLNTFSGIKEVQPFATGRLI-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDI 203

Query: 200 ERVRVRRFV 208
           +R R+R  V
Sbjct: 204 QRNRLRHLV 212


>gi|325140361|gb|EGC62883.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis CU385]
          Length = 445

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 35  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 92  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 148 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 205

Query: 204 VRR 206
            R 
Sbjct: 206 FRH 208


>gi|308066891|ref|YP_003868496.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
 gi|305856170|gb|ADM67958.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
          Length = 482

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 14/191 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           I+VAVSGG DS+ LL  LH +        ++     V H  R    D E   V ++  +L
Sbjct: 29  IVVAVSGGPDSVALLHILHEI--SVIHMPLQLVCAHVHHGFRPEESDAEAEEVRNIARKL 86

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +    V     +   G   AARE RY  + + A    A  I  AH  DDQ ETV 
Sbjct: 87  ELPFEMTRVDVPAYMKESGKGPQEAARELRYNFLHDMATKWEAQHIAMAHHGDDQAETVL 146

Query: 137 MRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +   R     G G +G+    L   + N+ + RP LR  + D+  F    N+S+  D +N
Sbjct: 147 LHLLR-----GSGPAGLAGMRLARREKNVQLIRPLLRMYKADLIEFCNFYNLSYVTDSTN 201

Query: 195 TDDRFERVRVR 205
              ++ R  +R
Sbjct: 202 LSSKYRRNAIR 212


>gi|283781738|ref|YP_003372493.1| tRNA(Ile)-lysidine synthetase [Pirellula staleyi DSM 6068]
 gi|283440191|gb|ADB18633.1| tRNA(Ile)-lysidine synthetase [Pirellula staleyi DSM 6068]
          Length = 306

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 2/112 (1%)

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ AAAREARY   ++ A+      ++T HT +DQLETV  R  R       G++GM   
Sbjct: 72  GMEAAAREARYHFFTQAAEARGCRYVITGHTENDQLETVLFRMLRGTGIA--GIAGMPRA 129

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
                 + + RP L   R ++  +L   +  +C+D +N +D F R R+R  V
Sbjct: 130 RTLSPAVTLLRPMLSITRSEVLEYLASLDQPYCDDATNDEDTFTRNRIRNLV 181


>gi|167036726|ref|YP_001664304.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320115148|ref|YP_004185307.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855560|gb|ABY93968.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928239|gb|ADV78924.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 458

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++ VSGG DS+ +L  L+++   +    +K   + V+H +R E AK + ++V D+C +L
Sbjct: 21  IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNHMIRGEAAKRDAQFVEDMCRKL 77

Query: 81  RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           ++   +   K+ K     M      A R  RY    E  K +    I  AH  +D +ETV
Sbjct: 78  KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++   R     G G++G+    +  +N  I RP +   RE+I  +L ++++    D +N 
Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIEKYLKEKDLKPAIDFTNY 189

Query: 196 DDRFERVRVR 205
           +D ++R +VR
Sbjct: 190 EDLYKRNKVR 199


>gi|313500224|gb|ADR61590.1| TRNA(Ile)-lysidine synthase [Pseudomonas putida BIRD-1]
          Length = 427

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 80/185 (43%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L      R+       AI + H L+  A     +   +C    + 
Sbjct: 15  VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  + S P   L  AAR+ARYA   +        ++ T    DDQ ET+  R  R  
Sbjct: 73  LQVIHVQVS-PGASLEQAARDARYAAFRQVLGP--GDILFTGQHRDDQAETLLFRLLRGA 129

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+       T+       + RP L C R+ ++ +   + ++W EDPSN D +F R  
Sbjct: 130 GLRGLAAMPGQRTLGQGR---LVRPLLACSRQHLQDYAQAQGLTWIEDPSNLDIQFARNY 186

Query: 204 VRRFV 208
           +R  V
Sbjct: 187 LRGEV 191


>gi|77358707|ref|YP_338292.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|77358709|ref|YP_338291.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|218768194|ref|YP_002342706.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491]
 gi|61216742|sp|Q9JUE9|TILS_NEIMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|73919876|sp|Q4W568|TILS_NEIMB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|66731914|gb|AAY52148.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|66731931|gb|AAY52164.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|121052202|emb|CAM08525.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491]
 gi|325134335|gb|EGC56981.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M13399]
 gi|325200183|gb|ADY95638.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis H44/76]
 gi|325206037|gb|ADZ01490.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M04-240196]
          Length = 426

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 186

Query: 204 VR 205
            R
Sbjct: 187 FR 188


>gi|325144442|gb|EGC66742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240013]
          Length = 445

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 35  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 92  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 148 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 205

Query: 204 VRR 206
            R 
Sbjct: 206 FRH 208


>gi|187933472|ref|YP_001884417.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum B str. Eklund
           17B]
 gi|187721625|gb|ACD22846.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum B str. Eklund
           17B]
          Length = 468

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 114/254 (44%), Gaps = 23/254 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           IL+A+SGG DS+ LL  L  +   R    I+  A  ++H LR  +  KDE  +V + C  
Sbjct: 21  ILIALSGGPDSLCLLNMLKEL---REELDIEIGAAHLNHLLRGDDAFKDE-EFVINTCKE 76

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + I   V    ++  + + +     A R  RY    E  K      I TAH  +DQ ET+
Sbjct: 77  MNIPCYVKRVDINKYSKEHRLSSELAGRNVRYDFFDEILKKEGFNKIATAHNANDQAETI 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R  R     G GL G+    +Y  N  I RP L   R ++  ++ ++ ++   D +N 
Sbjct: 137 IFRMMR-----GTGLEGLGGIKVYRENKII-RPILCLTRTEVEKYIEEKKLNPRIDKTN- 189

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
              FE++  R  +R   L  +    + F +  VK  N +++LI K   +  R  I    +
Sbjct: 190 ---FEKIYNRNKIR---LDIIPYIQENFNEDIVKTLNRMSLLIQKDNALIERLCIKAYNE 243

Query: 256 ILNIDSTLLFYLLR 269
               D+   F++L+
Sbjct: 244 YCKKDNDSKFFILK 257


>gi|167761978|ref|ZP_02434105.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC
           43183]
 gi|167700210|gb|EDS16789.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC
           43183]
          Length = 431

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 18/197 (9%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + L+ P   +LVA+SGG+DS+ LL  L +   D       F          E+ +DE  +
Sbjct: 13  KQLLQPTDKVLVALSGGADSVALLRLLQASGYDCEAAHCNFHLRGA-----ESDRDEA-F 66

Query: 73  VSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V  +C + ++    V +  ++        +  AARE RY    E  + INA  I  AH  
Sbjct: 67  VRQLCVKQQVPLHTVHFDTARTAEERHISIEMAARELRYGWFEEIRQKINADAIAVAHHQ 126

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET+ +   R     G G++G+    +   N  I RP L   R++I S+L +    +
Sbjct: 127 DDSVETLLLNLIR-----GTGINGL--RGIRPKNGHIVRPLLCLERKEIISYLNRIGQDY 179

Query: 189 CEDPSNTDDRFERVRVR 205
             D +N  D + R ++R
Sbjct: 180 VTDSTNLQDEYTRNKIR 196


>gi|261211361|ref|ZP_05925649.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC341]
 gi|260839316|gb|EEX65942.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC341]
          Length = 440

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 9/188 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A    ++    C  + 
Sbjct: 20  LLLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQWAQHCQLCCREVG 76

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +A  +   + +      +   AREARY  +S+H  +   TL++     DDQLET  +  +
Sbjct: 77  MACQIEYVQLDLASGESIEKMAREARYQALSQHVGS--DTLLLLGQHADDQLETFLLALK 134

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG+              L   RP L   R+ I ++  Q  ++W  D SN D R+E
Sbjct: 135 RGSGPKGLAAMAAYSPFAEGHLL---RPLLTVSRQHIEAYAKQHKLTWVTDESNADTRYE 191

Query: 201 RVRVRRFV 208
           R  +R  V
Sbjct: 192 RNFLRHQV 199


>gi|158319482|ref|YP_001511989.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158139681|gb|ABW17993.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 463

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           I+VA+SGG DS+ LL   H++   R    ++     ++H  R   A+ + +YV+++C  L
Sbjct: 21  IIVAISGGPDSVCLL---HNLYQLREEYNLELYGAHLNHNFRGIDAQVDAQYVANLCEEL 77

Query: 81  RIAHSVVSWK--NSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   + S        + GL +  A R  RY    E A+ + A  I  AH  +DQ ETV 
Sbjct: 78  NILCFIKSMDVPQYAKEKGLSSEEAGRILRYEFFDEIAEQVGANKIAVAHNENDQAETVL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G GL G+  T ++     I RP L   R+ I  +  +  +S   D +N +
Sbjct: 138 MRLLR-----GTGLQGL--TAIHINRGRIIRPLLGVDRKSIEEYCEKYQLSPRIDKTNLE 190

Query: 197 DRFERVRVR 205
             ++R ++R
Sbjct: 191 SIYKRNKIR 199


>gi|71734564|ref|YP_275961.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555117|gb|AAZ34328.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323103|gb|EFW79192.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329625|gb|EFW85614.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 445

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             AI V H L+  A     +   VC  L +A  +V   N  P   +  AAR+ARY   ++
Sbjct: 57  LHAIHVHHGLQAAANAWPEHCRQVCQALGVAFELVR-VNVDPGASIEQAARQARYTAFTD 115

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLR 171
             +     +++T    DDQ ET+  R  R    +G+  + G    IL   +L   RP L 
Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRGLAAMPGQ--RILGRGHL--VRPLLA 169

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             R ++  +  Q  ++W EDPSN D RF R  +R  V
Sbjct: 170 VSRVELEGYAHQHGLNWVEDPSNDDSRFSRNFLRSDV 206


>gi|316985031|gb|EFV63984.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis H44/76]
          Length = 436

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 139 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 196

Query: 204 VRR 206
            R 
Sbjct: 197 FRH 199


>gi|253572641|ref|ZP_04850042.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6]
 gi|251837773|gb|EES65863.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6]
          Length = 426

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG+DS+ LL  LH+           F      H   E +  + ++V  +C +  
Sbjct: 22  LLVALSGGADSVALLRVLHTAGYQCEAAHCNF------HLRGEESNRDEQFVRQLCQKYG 75

Query: 82  IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I    + +  ++  T     +  AARE RY    +  +   A +I  AH  DD +ET+ +
Sbjct: 76  IRLHTIDFNTTQYATEKRISIEMAARELRYNWFEKIKEECGAHVIAVAHHQDDSVETMLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+    +   N  I RP L   RE+I  +L Q    +  D +N +D
Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGAIVRPLLCINREEIIRYLQQIGQDFVTDSTNLED 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|115352161|ref|YP_774000.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD]
 gi|115282149|gb|ABI87666.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD]
          Length = 473

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 100/228 (43%), Gaps = 25/228 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVALADLPADARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122
           A   V +      RL +  +  S +   P+    G+ A+ARE RYA +    +      +
Sbjct: 69  ADAWVAHAQATAERLGV--TFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVAAL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
             A   DDQ ETV ++  R     G G++G+            ++   RPFLR  R  + 
Sbjct: 127 WVAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGASVERVRPFLRLLRAQLE 181

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID-LHALYLKMKKFQD 225
            +  QR ++W +D SN D R+ R  +R     ID L  L +    F+D
Sbjct: 182 RYAAQRELAWIDDESNADTRYARNALR-----IDVLPTLAMHFPGFRD 224


>gi|290969234|ref|ZP_06560759.1| tRNA(Ile)-lysidine synthetase [Megasphaera genomosp. type_1 str.
           28L]
 gi|290780740|gb|EFD93343.1| tRNA(Ile)-lysidine synthetase [Megasphaera genomosp. type_1 str.
           28L]
          Length = 458

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +L A SGG DS+ LL  L      R    I+ +   ++H +R  A DE R V    +   
Sbjct: 21  VLAACSGGPDSLALLDVLARC---RERLHIEVAVAYINHGIRAAAFDEERRVQQAAAARG 77

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               I  + V     + +  L  AARE RY L+ +  + I A  I  AH  +DQ ETV  
Sbjct: 78  CPCYIRRTAVPALARRRKQSLETAAREERYRLLRDVQRQIRAQSIAVAHHQNDQAETVLW 137

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                +  +G GL+G+    +      I RPFL   R +I  +  +R++  C D +N + 
Sbjct: 138 -----HLVRGSGLTGLAG--MRPRREKIIRPFLCVTRAEITDYAARRHLHPCHDETNDEL 190

Query: 198 RFERVRVR 205
              R ++R
Sbjct: 191 HCTRNKLR 198


>gi|111115622|ref|YP_710240.1| hypothetical protein BAPKO_0840 [Borrelia afzelii PKo]
 gi|123046902|sp|Q0SM64|TILS_BORAP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|110890896|gb|ABH02064.1| hypothetical protein BAPKO_0840 [Borrelia afzelii PKo]
          Length = 440

 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNNII------AFYFAHFIRPDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +    +  K+   + G  +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQIKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GL+G+       +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLAGIP-----SVNKNIIRPLLEVSRPEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NI    D +N+ + + R +VR
Sbjct: 180 LSLNNIRVFIDSTNSQNLYLRNKVR 204


>gi|313664903|ref|YP_004046774.1| tRNA(Ile)-lysidine synthetase [Mycoplasma leachii PG50]
 gi|312949767|gb|ADR24363.1| tRNA(Ile)-lysidine synthetase [Mycoplasma leachii PG50]
          Length = 401

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 109/222 (49%), Gaps = 15/222 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A+SGG DS+ LL  +  ++   +          V++  R  + ++ + V+++C +  +
Sbjct: 13  LLAISGGPDSVFLLCNIVKIIDSTNLI-----VCHVNYNFRYDSINDQKIVTNLCKKFDL 67

Query: 83  AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              +++     S  +    + AR  RY   ++ AK  +   ++ AH F+D +ET  ++ Q
Sbjct: 68  KLEILNINKDYSLLKENFESWARFQRYDFFNKIAKKYHIYNLLVAHNFNDLIETYLLQLQ 127

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R+      GL     T+ +  +L + RP L  ++ +I  +L    IS+  D +NTD +++
Sbjct: 128 RNNLVDYYGLK----TVSHYKDLVVYRPLLDIKKSEILDYLKMNQISYAIDSTNTDIKYQ 183

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           R ++R  + +    ++++ +K   D+  K    +  ++  YL
Sbjct: 184 RNKIRSILDE----SIFINIKNQIDIDNKKLETIKKIVNNYL 221


>gi|298386289|ref|ZP_06995845.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14]
 gi|298260666|gb|EFI03534.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14]
          Length = 426

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG+DS+ LL  LH+           F      H   E +  + ++V  +C +  
Sbjct: 22  LLIALSGGADSVALLRVLHTAGYQCEAAHCNF------HLRGEESNRDEQFVRQLCQKYG 75

Query: 82  IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I    + +  ++  T     +  AARE RY    +  +   A +I  AH  DD +ET+ +
Sbjct: 76  IRLHTIDFNTTQYATEKRISIEMAARELRYNWFEKIKEECGAHVIAVAHHQDDSVETMLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+    +   N  I RP L   RE+I  +L Q   ++  D +N +D
Sbjct: 136 NLIR-----GTGITGLLG--IRPRNGAIVRPLLCINREEIIRYLQQIGQNFVTDSTNLED 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|121535066|ref|ZP_01666883.1| tRNA(Ile)-lysidine synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306316|gb|EAX47241.1| tRNA(Ile)-lysidine synthetase [Thermosinus carboxydivorans Nor1]
          Length = 468

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 19/212 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  ++++    R L     ++VA SGG DS+ L+  LH +     F  +      VDH
Sbjct: 1   MILEKVKALVERRRLLTAGDRVVVACSGGPDSLALVHLLHRLQPAYGFDMV---VAHVDH 57

Query: 61  CLR--ETAKDEVRYVSDVCSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
            LR  E+A+ E  +V   C RL    ++A   V    ++        AR  RYA +   A
Sbjct: 58  MLRGAESAR-EAEFVRAFCRRLGLDCQVAAIDVPGVLAERGGSTQEVARTLRYAFLRRVA 116

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCR 173
            ++    I T H  DDQ ETV +   R     G+ G+      I+        RP L   
Sbjct: 117 DSLGGAKIATGHHRDDQAETVLINFLRGAGPGGLRGMQPAAGGII--------RPLLSVT 168

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           R++I  +     ++ C D SN    + R RVR
Sbjct: 169 RQEIEDYCAAEGLTPCLDSSNLHTDYLRNRVR 200


>gi|257894175|ref|ZP_05673828.1| PP-loop family protein [Enterococcus faecium 1,231,408]
 gi|257830554|gb|EEV57161.1| PP-loop family protein [Enterococcus faecium 1,231,408]
          Length = 293

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 7/187 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL AVSGG DSM LL  L  V   R  G      + ++H LRE + +E  Y+   C    
Sbjct: 33  ILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEEKN 89

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV M+  R
Sbjct: 90  LPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKIVR 148

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +    SG+ +   +     I RP L   +ED+ ++  +  + + ED +N     +R
Sbjct: 149 --GGQLNTFSGIKEVQPFATGRLI-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDIQR 205

Query: 202 VRVRRFV 208
            R+R  V
Sbjct: 206 NRLRHLV 212


>gi|149192143|ref|ZP_01870364.1| cell cycle protein MesJ [Vibrio shilonii AK1]
 gi|148834013|gb|EDL51029.1| cell cycle protein MesJ [Vibrio shilonii AK1]
          Length = 437

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 25/201 (12%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------- 68
           V    I+V  SGG DS  +L+ L +  S +    I   A+ V H L + A +        
Sbjct: 16  VMHGKIIVGFSGGVDSR-VLLRLAARYSKQH--SITCLAVHVHHGLSDNANEWQVQCERW 72

Query: 69  -EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            +   V   C R+ ++              L   AR+ARY  + +H ++    +++T   
Sbjct: 73  AQEEAVEFTCERVTLSQD--------SGESLEQLARQARYQALRQHMQS--GDILLTGQH 122

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ +  +R    KG  LS M  ++ +     + RP L   R DI  +     + 
Sbjct: 123 LDDQAETMLLALKRGSGPKG--LSSMASSMNFGSGR-LVRPLLNIARHDIERYAQHEQLQ 179

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W ED SN+D RF+R  +R+ V
Sbjct: 180 WVEDESNSDTRFDRNFLRQSV 200


>gi|167747340|ref|ZP_02419467.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662]
 gi|167653318|gb|EDR97447.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662]
          Length = 437

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 18/193 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG+DS+ LL+ L  +  +     ++  A+ ++H +R  A  +  +V ++C R +
Sbjct: 20  IAVGVSGGADSVCLLLLLCELKQEYD---LELCAVHINHGIRREAFKDQEFVENLCRRRK 76

Query: 82  IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +        V     K    L  A R  RY    +         I  AH  +DQ ET+  
Sbjct: 77  VPWITFSEDVKGTAEKQSMSLEEAGRMIRYRCFRKVLDMHGGGKIAVAHHQNDQAETMLY 136

Query: 138 RSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           R  R     G G+ G+   + +  D    + RP L  ++E+I ++L +++  W ED SN 
Sbjct: 137 RMSR-----GTGIQGLKGMEAVRAD----VIRPLLCLKKEEILAYLKEKDQDWMEDASNE 187

Query: 196 DDRFERVRVRRFV 208
           D+ F R ++R  V
Sbjct: 188 DNTFARNKIRNQV 200


>gi|288819201|ref|YP_003433549.1| cell cycle protein [Hydrogenobacter thermophilus TK-6]
 gi|288788601|dbj|BAI70348.1| cell cycle protein [Hydrogenobacter thermophilus TK-6]
 gi|308752783|gb|ADO46266.1| tRNA(Ile)-lysidine synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 316

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 21/204 (10%)

Query: 14  RSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VDHCLRETAKDEV 70
           R  + P H  +LVA SGG DS+     + ++L  + F K+K  A++ ++H +R  +  + 
Sbjct: 15  RKKLIPEHASVLVAFSGGIDSV---ALVLALLELKDFFKLKRVALAHINHGIRAQSDRDE 71

Query: 71  RYVSDVCSRLRIAHSVVSW--KNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   R R+   V  +  K    + G  L A ARE RY  +    +     +I TAH
Sbjct: 72  DFAVEFARRKRLEIFVERFHVKKMAEEEGENLEALAREVRYKALRSIKQKEGFDIIATAH 131

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQR 184
             +D +ETV +     +  +G GL G+   D    D    I RP     +E+I+ F++ R
Sbjct: 132 HLNDLVETVIL-----WLVRGAGLEGLTGFDEKTED----IVRPLYLVTKEEIKDFVISR 182

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
             +W ED +N D  + R R+R  V
Sbjct: 183 GEAWVEDATNYDINYARNRIRHRV 206


>gi|47093161|ref|ZP_00230936.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes str. 4b H7858]
 gi|226222848|ref|YP_002756955.1| hypothetical protein Lm4b_00217 [Listeria monocytogenes Clip81459]
 gi|254933059|ref|ZP_05266418.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|21667249|gb|AAM74001.1|AF467001_2 YacA/HprT-like protein [Listeria monocytogenes]
 gi|47018468|gb|EAL09226.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes str. 4b H7858]
 gi|225875310|emb|CAS04007.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293584617|gb|EFF96649.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|332310628|gb|EGJ23723.1| Bifunctional protein tilS/hprT [Listeria monocytogenes str. Scott
           A]
          Length = 648

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A +E   V   C    
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHINHHLRENAANEQNVVEAFCESQG 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    V  +    Q G+   AR  RY    +         +  AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I  +  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|308389283|gb|ADO31603.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis alpha710]
          Length = 436

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 139 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 196

Query: 204 VRR 206
            R 
Sbjct: 197 FRH 199


>gi|303235677|ref|ZP_07322284.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN]
 gi|302484124|gb|EFL47112.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN]
          Length = 461

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 27/192 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77
           +V +SGG+DS+ LL+ L  +  +          I   HC   LR  E+ +DE  Y   +C
Sbjct: 22  IVGLSGGADSVALLLVLKHLGYN----------IEAAHCNFNLRGEESNRDE-EYCKKLC 70

Query: 78  SRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +L +   ++ +         +  +  AAR  RY       + I A  I  AH  DD +E
Sbjct: 71  EKLNVPFHLIHFDTILYAELHKVSIEMAARTLRYGYFENLRRDIQADAICIAHHRDDSVE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G G+ G+    +   N  I RP L C R +I  FL ++ +++  D +
Sbjct: 131 TILLNLIR-----GTGMRGLVG--IRPKNSNIVRPMLDCSRHEIELFLKEKGVNFVTDST 183

Query: 194 NTDDRFERVRVR 205
           N  D  +R ++R
Sbjct: 184 NLIDDVKRNKLR 195


>gi|258614287|ref|ZP_05712057.1| hypothetical protein EfaeD_01112 [Enterococcus faecium DO]
          Length = 343

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + IL AVSGG DSM LL  L  V   R  G      + ++H LRE + +E  Y+   C  
Sbjct: 34  SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV M+ 
Sbjct: 91  KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +    SG+ +   +     I RP L   +ED+ ++  +  + + ED +N     
Sbjct: 150 VR--GGQLNTFSGIKEVQPFATGRLI-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDI 206

Query: 200 ERVRVRRFV 208
           +R R+R  V
Sbjct: 207 QRNRLRHLV 215


>gi|154490240|ref|ZP_02030501.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC
           43184]
 gi|154089132|gb|EDN88176.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC
           43184]
          Length = 444

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 21/190 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           +LV VSGG+DS+ LL    ++L +  +  I   A   +  LR  E+ +DE ++V +   +
Sbjct: 21  VLVGVSGGADSIALL----TILVESGYSCI---AAHCNFHLRGDESLRDE-QFVREYARK 72

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L +   +  +   K        +  AARE RY    E      A  +  AH  DD +ET+
Sbjct: 73  LDVPFLMTDFDTRKYAADRHLSIEMAARELRYGWFEEQRAATGAQAVAVAHHRDDSVETL 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            M   R     G G+ GM    +   N ++ RP L   REDI  +L  R +++  D +N 
Sbjct: 133 LMNLVR-----GTGIRGMSG--IRPRNGFVVRPLLAVSREDILEWLAGRGLTYVTDSTNL 185

Query: 196 DDRFERVRVR 205
            D + R  +R
Sbjct: 186 SDAYTRNFIR 195


>gi|254804970|ref|YP_003083191.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14]
 gi|254668512|emb|CBA05883.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14]
          Length = 436

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSV---VLLHLLVRAGKKGSFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 139 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 196

Query: 204 VR 205
            R
Sbjct: 197 FR 198


>gi|166033184|ref|ZP_02236013.1| hypothetical protein DORFOR_02906 [Dorea formicigenerans ATCC
           27755]
 gi|166027541|gb|EDR46298.1| hypothetical protein DORFOR_02906 [Dorea formicigenerans ATCC
           27755]
          Length = 516

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 59/266 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
           ++V VSGG+DS+ LL  L  +  +R     G ++ +A+ V H LR ++A  + RYV  +C
Sbjct: 21  VIVGVSGGADSVCLLFVLTKLRDERQKSGDGTLEITAVHVHHGLRGDSADADERYVRKIC 80

Query: 78  SR----LRIAHSVV-----SWKNSKPQTGLMAAAREA----------------RYALI-S 111
                 L + H  +      W  S+ + G   A REA                +Y  I S
Sbjct: 81  DAWNVPLVVYHKNIRELAKCWNMSEEEAG-RKARREAFLEVRNQYSDVPCDNAQYGDIQS 139

Query: 112 EHAKTINA--------TLIMTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILY 159
            HA+  N           I  AH  +D+ ETV     R    +G+G    +SG       
Sbjct: 140 RHAECANGRQESAQGFGKIALAHHRNDEAETVLFHLCRGTDVRGLGGIAPVSG------- 192

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV----RDIDLHA 215
               WI RP L   R +I S+L +  IS+C D +N ++ + R ++R  V     +I+  A
Sbjct: 193 ---FWI-RPLLNIGRNEIESYLEKVGISYCTDETNAENVYARNKLRNQVIPQLEEINEQA 248

Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKY 241
           ++   +  Q +R ++ + V M I +Y
Sbjct: 249 VWHISRTAQSVR-ELWSYVDMQIEEY 273


>gi|226355797|ref|YP_002785537.1| tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115]
 gi|259533711|sp|C1D1Q9|TILS_DEIDV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226317787|gb|ACO45783.1| putative tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115]
          Length = 533

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 13/155 (8%)

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEH 113
           +DH LR  + ++ ++V D+  +L  AH+     V+   ++    +  AAR  RY ++S  
Sbjct: 45  LDHALRPNSAEDAQWVHDLAEQLGAAHTSTRVDVAAVAARRGWNVEDAARRVRYEVLSRA 104

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+   A  +MTAHT  DQ ETV M         G+       T +  +   + RP+L   
Sbjct: 105 ARQHGAHTVMTAHTRRDQAETVLM---------GLLRGEAVLTGIPAVRGRVRRPWLDVP 155

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           R +I ++L      W EDP+N D  + R  +R  V
Sbjct: 156 RSEIEAYLKALGQEWREDPTNADVTYTRAWLRTEV 190


>gi|322515783|ref|ZP_08068728.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis ATCC
           49124]
 gi|322125745|gb|EFX97063.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis ATCC
           49124]
          Length = 280

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 22/187 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+       +
Sbjct: 21  ILVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEYEEDYLRHWAKEHK 77

Query: 82  I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I   +S  S K S+       AAR  RY    +  K  + + ++TAH  DDQ ET++MR 
Sbjct: 78  IPFHYSAFSGKFSE------NAARTFRYDFFKQIMKEADYSALVTAHHADDQAETIFMRL 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDPSNTDDR 198
            R    +   LSG+CD   +     I RPFL   +        Q  I++  ED SN+   
Sbjct: 132 LR--GSRLRHLSGICDVRSFGTG-QIIRPFLHIPKA-------QLPITFHFEDKSNSSLA 181

Query: 199 FERVRVR 205
           + R R+R
Sbjct: 182 YLRNRIR 188


>gi|261364547|ref|ZP_05977430.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa ATCC 25996]
 gi|288567113|gb|EFC88673.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa ATCC 25996]
          Length = 416

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 9/184 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG DS   ++ LH++   R    +   A+ V H L   A D + + + +C    
Sbjct: 2   VTVGLSGGLDS---VVLLHTLACLREELGLDVHALHVHHGLSRNADDWLVFCTRLCQEWN 58

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +       +  K   G+ AAAR+ARY + S+   ++    I  AH  DDQ+ET  + + R
Sbjct: 59  VPFRSAKVEVKKDGLGIEAAARKARYQVFSDDPSSV----IALAHHQDDQIETFMLAAVR 114

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               K +        +  +  +W  RP L   R+++ ++    N+   ED SN D  F R
Sbjct: 115 GGGIKALAAMPQWRKLNEEKQIW--RPLLTFSRKELENYAAACNLPNIEDESNADTAFLR 172

Query: 202 VRVR 205
             +R
Sbjct: 173 NWMR 176


>gi|88798276|ref|ZP_01113862.1| cell cycle protein MesJ [Reinekea sp. MED297]
 gi|88779052|gb|EAR10241.1| cell cycle protein MesJ [Reinekea sp. MED297]
          Length = 439

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 15/208 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFL     +R   +  VY     V  SGG DS+ LL      L+ +++G  + +AI V+H
Sbjct: 11  MFLDLQRELRRNFQPPVY-----VGYSGGVDSILLL-----SLACQAYGADQVTAIHVNH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            + E A     +      +L  +  V + +      G+ + AR+ RY   + +      T
Sbjct: 61  QVSEFATQWQEHCVAQAEQLGCSCIVRTVEVGNRGQGIESDARDRRYDAFA-NVMPEGGT 119

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           L++  H  DDQ+ET ++R  R   + G  L GM      D    I RP L   R+DI   
Sbjct: 120 LLL-GHHLDDQIETFFLRLLRGAGQHG--LQGMVQESNRD-GYRIIRPLLTTSRQDIELM 175

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
                + W +D SN D RF+R  +R  V
Sbjct: 176 AQHHGLRWIDDESNEDTRFDRNFLRHEV 203


>gi|329723928|gb|EGG60453.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU144]
          Length = 166

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 16/128 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            AHI+VAVS G DSM LL   +S+L+D      K + + V+H LRE + +E  ++ + C 
Sbjct: 11  KAHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCQ 67

Query: 79  RLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +  I           +V+  NS  Q      AR+ RY    +    + A +++TAH  DD
Sbjct: 68  QHHIDIYIKRLDLSDIVAAGNSIQQ-----EARQCRYEWFGDIIAQLRADVLLTAHHLDD 122

Query: 131 QLETVYMR 138
           QLET+  R
Sbjct: 123 QLETIIYR 130


>gi|325278802|ref|YP_004251344.1| tRNA(Ile)-lysidine synthase [Odoribacter splanchnicus DSM 20712]
 gi|324310611|gb|ADY31164.1| tRNA(Ile)-lysidine synthase [Odoribacter splanchnicus DSM 20712]
          Length = 441

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 21/207 (10%)

Query: 7   ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E+++ F++   +   A  ++AVSGG+DS+ +L A         +  +K   +  +  LR 
Sbjct: 4   ETIKNFLQQHHISRDAGFILAVSGGADSICMLHAF-------KYLNLKMLVLHCNFSLRG 56

Query: 65  TAKD-EVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINA 119
              D + ++V   C    IAHSV  +   K   + GL    AARE RY    E  +    
Sbjct: 57  KESDMDEQFVKRFCDSYGIAHSVKKFDTLKYARENGLSVEMAARELRYTWFREMKEKKKM 116

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I+ AH  DD  ETV +   R     G G+ G+  T +  +N  I RP L C R DI  
Sbjct: 117 DYIVVAHHADDVAETVLINLCR-----GTGIKGL--TGIKSINGDILRPLLPCSRTDILK 169

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRR 206
           ++    + +  D +N    + R ++R 
Sbjct: 170 YIEDHQLGFRTDSTNNSLDYVRNKIRH 196


>gi|254428462|ref|ZP_05042169.1| PP-loop family [Alcanivorax sp. DG881]
 gi|196194631|gb|EDX89590.1| PP-loop family [Alcanivorax sp. DG881]
          Length = 433

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 22/193 (11%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           +L+A+SGG DS + L + + + L  R       SA+ +DH L+  ++   R+   +  + 
Sbjct: 20  LLLALSGGLDSCLLLHLLIKAGLGPR------LSAVHIDHQLQADSQGWARFCQALADQQ 73

Query: 80  ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
              L I    V   N     GL A AR+ARY ++   A+   ATL+M AH  +DQ ET+ 
Sbjct: 74  GIPLAIEKVAVDMAN-----GLEAGARDARYRVLLPLARAQGATLVM-AHHRNDQAETLL 127

Query: 137 MRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R  R    +  GLS M + +    + LW  RP L   R+ + S+    +++W EDPSN 
Sbjct: 128 FRLLRGAGVQ--GLSAMREHSEQQGVPLW--RPLLGVGRQTLESWGAALSLNWREDPSNQ 183

Query: 196 DDRFERVRVRRFV 208
           D    R  +R  +
Sbjct: 184 DQSLRRNYLRHTI 196


>gi|216263345|ref|ZP_03435340.1| tRNA(Ile)-lysidine synthetase [Borrelia afzelii ACA-1]
 gi|215980189|gb|EEC21010.1| tRNA(Ile)-lysidine synthetase [Borrelia afzelii ACA-1]
          Length = 440

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSNNII------AFYFAHFIRPDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +    +  K+   + G  +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQIKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +  +G+  +   I+        RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGLVGIPSVNKNII--------RPLLEVSRPEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NI    D +N+ + + R +VR
Sbjct: 180 LSLNNIRVFIDSTNSQNLYLRNKVR 204


>gi|239607883|gb|EEQ84870.1| PP-loop family protein [Ajellomyces dermatitidis ER-3]
          Length = 688

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG DSM L      ++S+R    +K     VDH  RE + +E   V+D   
Sbjct: 39  PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98

Query: 79  RLRIAHSV--VSWK-NSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+  +SW   + P   T     AR+ RY ++ +  +  N+  +   H  DD +E
Sbjct: 99  DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMC 154
           TV  R  R    +  GL G+ 
Sbjct: 159 TVLSRVARG-QRQATGLKGVA 178


>gi|255282025|ref|ZP_05346580.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469]
 gi|255267344|gb|EET60549.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469]
          Length = 471

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 19/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78
           ++  VSGG+DS+ LL  L          ++ FS  A+ V+H +R + + ++  +V  +C 
Sbjct: 20  VIAGVSGGADSLCLLFVLMEYRK-----RVPFSILAVHVEHGVRGQESLEDAAFVEKICR 74

Query: 79  R----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                 R+    V     + +  +  A R ARY       +   A  I  AH  DDQ ET
Sbjct: 75  EHTIEYRLVQVCVPELARREKLSVEEAGRRARYEAFERIRQETGADKIAVAHNRDDQAET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V  +  R     G GL+G     +  +   + RP L C R +I  +L   + +W  D +N
Sbjct: 135 VLFQIAR-----GSGLTGAGG--IRPVRGAVIRPLLSCSRAEIEEYLRGHSQTWRTDATN 187

Query: 195 TDDRFERVRVR 205
            +  + R R+R
Sbjct: 188 QETDYARNRIR 198


>gi|327355825|gb|EGE84682.1| PP-loop family protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 688

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG DSM L      ++S+R    +K     VDH  RE + +E   V+D   
Sbjct: 39  PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98

Query: 79  RLRIAHSV--VSWK-NSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+  +SW   + P   T     AR+ RY ++ +  +  N+  +   H  DD +E
Sbjct: 99  DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMC 154
           TV  R  R    +  GL G+ 
Sbjct: 159 TVLSRVARG-QRQATGLKGVA 178


>gi|261198252|ref|XP_002625528.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081]
 gi|239595491|gb|EEQ78072.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081]
          Length = 688

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG DSM L      ++S+R    +K     VDH  RE + +E   V+D   
Sbjct: 39  PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98

Query: 79  RLRIAHSV--VSWK-NSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+  +SW   + P   T     AR+ RY ++ +  +  N+  +   H  DD +E
Sbjct: 99  DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMC 154
           TV  R  R    +  GL G+ 
Sbjct: 159 TVLSRVARG-QRQATGLKGVA 178


>gi|182414547|ref|YP_001819613.1| tRNA(Ile)-lysidine synthetase [Opitutus terrae PB90-1]
 gi|177841761|gb|ACB76013.1| tRNA(Ile)-lysidine synthetase [Opitutus terrae PB90-1]
          Length = 353

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 21/194 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCSRL 80
           +VA SGG+DS+ LL+ L +   +    + + SA   +H LR  A  +DE R+ + VC+ L
Sbjct: 43  MVAFSGGADSLALLLLLWAHWPEH---RRRLSAAHFNHRLRGRAALQDE-RFCARVCAAL 98

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +  +V  W++ +P     A AR AR+A      +   A ++   H  DD  ET+ MR  
Sbjct: 99  HVPLAVDHWED-RPAKPSEAEARTARHAFFDRQLRKRRARVLWFGHQQDDIAETLLMRLA 157

Query: 141 RDYAEKGMGLSGMCDT------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           R     G GL+G+             ++L   RP L  ++ ++ + L +   SWCED +N
Sbjct: 158 R-----GSGLAGLAAPRPVQAMPAGKVHL---RPLLGLKKAELAAALRRCGASWCEDQTN 209

Query: 195 TDDRFERVRVRRFV 208
             + + R R+R+ V
Sbjct: 210 AGEHYLRSRIRQRV 223


>gi|327484760|gb|AEA79167.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae LMA3894-4]
          Length = 440

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   IL+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|256823094|ref|YP_003147057.1| tRNA(Ile)-lysidine synthetase [Kangiella koreensis DSM 16069]
 gi|256796633|gb|ACV27289.1| tRNA(Ile)-lysidine synthetase [Kangiella koreensis DSM 16069]
          Length = 423

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           HI+VA+SGG DS+ LL ALH    SD S+     SA+ +DH L+  + D  +     C  
Sbjct: 25  HIVVALSGGVDSLSLLHALHLARTSDSSYS---LSAVYIDHQLQAPSSDWAKQNQRFCES 81

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L I    V  +  K    L + AR+ARY  +SE        L+   H  +DQ ET  ++ 
Sbjct: 82  LDIPFQSVQVEVDKDLASLESTARKARYQALSEFVPNPQTCLVTGQH-LNDQAETFLLQL 140

Query: 140 QRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            R    KG+  +  + D        +++RP L   R+ + S+     +   EDP+N D  
Sbjct: 141 FRGAGSKGLASMPKLTDFA----QGYLARPLLTVSRKALESYCNSNGLQAIEDPTNQDTD 196

Query: 199 FERVRVRRFV 208
             R  VR  V
Sbjct: 197 IRRNFVRHQV 206


>gi|157414257|ref|YP_001485123.1| ATPase [Prochlorococcus marinus str. MIT 9215]
 gi|157388832|gb|ABV51537.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9215]
          Length = 338

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 20/199 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV--- 76
           ++IL++VSGG DSM LL    ++++D    KI    ISV H   +  K    Y  ++   
Sbjct: 33  SNILISVSGGQDSMALL----NLIND--LKKIHNWTISVWHGDHQWHKKSSLYALELKSY 86

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTFD 129
           C    I+ S    + +K        ARE RY  + E AKT+       +   ++T HT  
Sbjct: 87  CEDKNISFSFD--QANKENISSEEKAREWRYKKLCERAKTLLNKNQQKHNIYLLTGHTSS 144

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  ET  +   R       GLS +    L +  +++ RP L   RED + F     I   
Sbjct: 145 DNAETFILNLSR--GSNFAGLSNIQSKRLLENQIFLIRPILIFSREDTKKFCNHMKIPVW 202

Query: 190 EDPSNTDDRFERVRVRRFV 208
           EDP+N+D + +R  VR+ +
Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221


>gi|225016525|ref|ZP_03705717.1| hypothetical protein CLOSTMETH_00431 [Clostridium methylpentosum
           DSM 5476]
 gi|224950754|gb|EEG31963.1| hypothetical protein CLOSTMETH_00431 [Clostridium methylpentosum
           DSM 5476]
          Length = 445

 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 92/209 (44%), Gaps = 24/209 (11%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLR 63
           + S++  V SL      I+V VSGG+DSM LL AL      R  GK +   A  ++HCLR
Sbjct: 1   MNSIQIHVSSLFSEGDRIVVGVSGGADSMALLHAL------RHCGKPLHLVAAHLNHCLR 54

Query: 64  --ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
             E+ +DE ++V   C    I   +    V+    K    L    RE RYA   E     
Sbjct: 55  GEESERDE-QFVVGYCKEHGIPCEIRQIDVAAAAKKSGQSLELCGRELRYAFFEELCG-- 111

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I TAHT  D+ ET+     R     G   +G+C   +      I RP     R +I
Sbjct: 112 EQGFIATAHTLSDRAETLLFNLAR-----GSSPAGLCS--IPAQRGRIVRPLSPFTRGEI 164

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRR 206
            ++  +  I +  D SN  D + R R+RR
Sbjct: 165 EAYCKEYRIPYQIDSSNLSDDYARNRIRR 193


>gi|51246784|ref|YP_066668.1| cell cycle protein MesJ [Desulfotalea psychrophila LSv54]
 gi|61216493|sp|Q6AJ19|TILS_DESPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50877821|emb|CAG37661.1| related to cell cycle protein MesJ [Desulfotalea psychrophila
           LSv54]
          Length = 471

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 19/190 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V VSGG+DS+ LL  L  +  D     ++  AI +DH LR +    E+ +V      +
Sbjct: 31  IIVGVSGGADSIALLHILTELNLD-----LQLIAIYIDHGLRPDEIPQEISFVKGQAGAV 85

Query: 81  -----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                 I+  V++ KN   +     AAR  RY   +E  +   A  IM AH  DDQ+E  
Sbjct: 86  GAEFESISVDVLALKNCD-KLSTEDAARRLRYQAFAEARERYGAKYIMVAHNADDQVEEF 144

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++R  R    +  GLSGM     Y  N  + RP L   + D+  +L +R I  CED SN 
Sbjct: 145 FIRLLRGSGRR--GLSGMP----YQ-NGLLLRPLLSLTKADLLLYLQERGIDHCEDSSNR 197

Query: 196 DDRFERVRVR 205
           +  + R R+R
Sbjct: 198 EPCYLRNRIR 207


>gi|309379968|emb|CBX21379.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 411

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS+ LL  L  V + +  G I   A+ + H L   A D   +  + C  L + 
Sbjct: 1   MALSGGLDSVVLLQLL--VRAGKKGGFIP-EAVHIHHGLSPRADDWADFCQNYCDMLGVR 57

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 58  LETVKVCVEKNGLGIEAAARQKRYATFAEKGFDV----LALAHHRDDQIETFMLAVARGG 113

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   LS M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 114 GLR--ALSAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 171

Query: 204 VR 205
            R
Sbjct: 172 FR 173


>gi|254481735|ref|ZP_05094978.1| PP-loop family protein [marine gamma proteobacterium HTCC2148]
 gi|214037864|gb|EEB78528.1| PP-loop family protein [marine gamma proteobacterium HTCC2148]
          Length = 451

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 16/193 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVSDVCSR 79
           H  VA SGG DS  LL  ++S    ++ G+    +A+ ++H L+  A D   + + +C  
Sbjct: 22  HWYVAYSGGVDSTALLQLINSWC--KANGQAPPLTALHINHGLQAQAADWENHCAWICRF 79

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +    ++        G+ +AAR+ARYA   E  +     ++   H  DDQ+ET ++R 
Sbjct: 80  LDVPFLALNVDVDPDGRGVESAARQARYARFEEQLE--EGEVLFFGHHQDDQVETFFLRL 137

Query: 140 QRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R     G+       G+   +L        RP L   R  + +++  + + + EDPSN 
Sbjct: 138 LRGAGVDGLAAMPRQRGLGKGLLL-------RPLLDYSRAQLEAYVEAQGLRYIEDPSNQ 190

Query: 196 DDRFERVRVRRFV 208
           D   +R  +R+ V
Sbjct: 191 DVSLDRNYLRQDV 203


>gi|224534142|ref|ZP_03674722.1| tRNA(Ile)-lysidine synthetase [Borrelia spielmanii A14S]
 gi|224514567|gb|EEF84881.1| tRNA(Ile)-lysidine synthetase [Borrelia spielmanii A14S]
          Length = 440

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
            F+ ++ +  + ++VA SGG+DS  LL+ L   L +         A    H +R      
Sbjct: 14  EFYKKNSLNKSRVIVAFSGGTDSTTLLLNLKYYLRNN------IVAFYFAHFIRADNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V + C    IA  +    +  K+   + G  +   AR+ RY  +    K  +A  
Sbjct: 68  QEIEHVKEFCDFYNIALQIKKCDIDIKSEAIRLGVSIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GL+G+       +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLAGIP-----SVNGNIIRPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NI    D +N+ + + R RVR
Sbjct: 180 LSLNNIRVFVDSTNSQNLYLRNRVR 204


>gi|312130162|ref|YP_003997502.1| tRNA(ile)-lysidine synthetase [Leadbetterella byssophila DSM 17132]
 gi|311906708|gb|ADQ17149.1| tRNA(Ile)-lysidine synthetase [Leadbetterella byssophila DSM 17132]
          Length = 430

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 13/202 (6%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + F++ L  P+    LV VSGG DSM LL   +S           F     +  L E   
Sbjct: 4   KIFLKYLPNPSKEKFLVGVSGGKDSMALLDLFYSEGFQVEVAHANFQLRGEEANLDEQLV 63

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                V ++   ++   +    K SK  T +  AARE RY    +     N T +  AH 
Sbjct: 64  HTYCRVKNIPFHVKRFDTKKHAKESKTSTQM--AARELRYQWFYQLLAQRNLTAVALAHH 121

Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             D +ET+++   +    KG+ G+    + I+        RP L    E I  +L +  I
Sbjct: 122 RRDNIETLFLNITKGTGPKGLQGIPPRGENII--------RPILEATPEQILQYLEENKI 173

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
            W ED SN++  ++R ++R  V
Sbjct: 174 PWREDQSNSETYYQRNKIRHLV 195


>gi|114332355|ref|YP_748577.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas eutropha C91]
 gi|114309369|gb|ABI60612.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas eutropha C91]
          Length = 418

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 36  LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-P 94
           ++ LH ++       +  SAI V+H +   +     +   +C  + I  S+   K SK P
Sbjct: 1   MVLLHLLIKFSKLMPLDVSAIHVEHGISTYSGQWSAFCQTLCDSVAIPLSIHRLKISKQP 60

Query: 95  QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154
           Q  L A AREARY +     + I A  ++ A   DDQ+ET+ ++  R    KG  LS M 
Sbjct: 61  QESLEAVAREARYQIF----RQIQADYVLLAQHQDDQVETLLLQLLRGAGVKG--LSAMP 114

Query: 155 DTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              L++    I   RP L   R +I  +     +SW  D SN D  ++R
Sbjct: 115 TVRLFESGKAIKLLRPLLNVPRSEIMKYAKLHGLSWVTDESNLDVSYDR 163


>gi|332969142|gb|EGK08174.1| tRNA(Ile)-lysidine synthase [Kingella kingae ATCC 23330]
          Length = 425

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 142/351 (40%), Gaps = 57/351 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+ VA+SGG DS+ LL       S  S      SA+ + H L   A     + +D  S L
Sbjct: 21  HVCVALSGGVDSVVLLHLFAQAQS--SLQLTSLSALHIHHGLNAQADQWQAFCADYASSL 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I  +  S +      G+ AAAR+ARY + ++     NA  I  AH  +DQ+ET ++ + 
Sbjct: 79  HIPFTAQSVRIQTNGLGIEAAARQARYQIFAQQ----NADFIALAHHQNDQIETFWLAAL 134

Query: 141 RDYAEKGMGLSGM-------------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           R  + +   LS M             C T+L        RP L   RE I  +  Q  + 
Sbjct: 135 RGGSLR--ALSAMPKMRDLPRENRAGCLTLL--------RPLLPFTREQIVQYAQQNQLD 184

Query: 188 WCEDPSNTDDRFERVRVR-----RFVRDIDLHALYL--KMKKFQDLRVKVNNAVAMLIPK 240
           +  D SN +  F R  VR       V+    HA +L   +   Q+ R  ++  +A     
Sbjct: 185 FVYDNSNDNPNFLRNWVRLHLLPSIVQKQPAHAQHLLHSIATLQEERALLDEIIA---ED 241

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           +  +   ++   SQ +    S    + +    A    ++  P   S+ +    L+  + G
Sbjct: 242 WQRIQHNAL--FSQRLWQTLSPARQHQMLHQFAQ-RNELGAPSKSSLHQFAQQLRHAQSG 298

Query: 301 CVSI--GRVVI----------DRRANFLWITRAVRNLPTLILY---PEETT 336
             ++  GR V+          D  A++ W+ R   NLP  + +   PE  +
Sbjct: 299 EWTLPRGRAVLYRDYLFAIPHDLGASWTWLHRTQTNLPNELRWHNPPEHAS 349


>gi|52841023|ref|YP_094822.1| cell cycle protein MesJ [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|61216449|sp|Q5ZXE5|TILS_LEGPH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52628134|gb|AAU26875.1| cell cycle protein MesJ [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 433

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 36/328 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++V  SGG DS  LL  L S   LS+      +  A+ ++H +   + +  R+   +C  
Sbjct: 22  LIVGFSGGLDSTVLLHVLASTPPLSN------QLLAVHINHGISGNSLNWQRHCEQLCLD 75

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L IA    + +  +    +  AAR ARY   S   +  N  L++  H  DDQ ETV ++ 
Sbjct: 76  LGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G+     C  +       ++RPFL C R ++  +     + W ED SN D ++
Sbjct: 133 FRGAGVDGLAAMQECSNLGAGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKY 189

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R  +R  V       + L ++K+  +   ++ A          + + +I     D+LN 
Sbjct: 190 SRNYLRHRV-------MPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCP-DLLNA 241

Query: 260 DSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306
              LL   ++          +   +   +I LP  ++  R+   ++F K      VS  +
Sbjct: 242 TDHLLIEPIKGLEFERITNVLKFWLKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWNQ 301

Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPE 333
           + + R    L++ +A + NLP  I + +
Sbjct: 302 IQVRRFQQHLYLLKADQINLPKAIKWQQ 329


>gi|317471083|ref|ZP_07930455.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316901397|gb|EFV23339.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 309

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG+DS+ LL+ L  +  +     ++  A+ ++H +R  A  +  +V ++C R +
Sbjct: 20  IAVGVSGGADSVCLLLLLCELKQEYD---LELCAVHINHGIRREAFKDQEFVENLCRRRK 76

Query: 82  IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +        V     K    L  A R  RY    +         I  AH  +DQ ET+  
Sbjct: 77  VPWITFSEDVKGIAEKQSMSLEEAGRMIRYQCFRKVLDMHGGGKIAVAHHQNDQAETMLY 136

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +G  L GM + +  D    + RP L  ++E+I ++L ++   W ED SN D+
Sbjct: 137 RMSRGTGIQG--LKGM-EAVRAD----VIRPLLCLKKEEILAYLKEKGQDWMEDASNEDN 189

Query: 198 RFERVRVRRFV 208
            F R ++R  V
Sbjct: 190 TFARNKIRNQV 200


>gi|261392546|emb|CAX50101.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase;
           tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria
           meningitidis 8013]
          Length = 426

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G    +A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSV---VLLHLLVRAGKKGGFIPNALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 129 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186

Query: 204 VR 205
            R
Sbjct: 187 FR 188


>gi|92112713|ref|YP_572641.1| tRNA(Ile)-lysidine synthetase-like protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91795803|gb|ABE57942.1| tRNA(Ile)-lysidine synthetase-like protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 430

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 16/191 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA+SGG DS  LL+ L +V + R   +  + A+ V+H L++ A D   +   +C RL 
Sbjct: 28  VWVALSGGLDS-SLLLTL-AVAACRRHPRPLY-AVHVNHGLQDAAADFEAHARWLCGRLG 84

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V   +  +   GL A AR+AR A  +        TL++  H  DDQ ET+ +   R
Sbjct: 85  VPLFVERARVERGARGLEAHARDARLAAFARRVAP-GETLLLAQHA-DDQAETLLLAGLR 142

Query: 142 DYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                G GL GM    + +   W    + RP+L   R  +      R + W +DPSN D+
Sbjct: 143 -----GSGLRGMA--AMPERREWQGRVMVRPWLSVTRAALAREAEARGLRWIDDPSNADE 195

Query: 198 RFERVRVRRFV 208
           RF+R  +RR V
Sbjct: 196 RFDRNYLRRSV 206


>gi|261206683|ref|ZP_05921381.1| PP-loop family protein [Enterococcus faecium TC 6]
 gi|260079176|gb|EEW66869.1| PP-loop family protein [Enterococcus faecium TC 6]
          Length = 481

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + IL AVSGG DSM LL  L  V   R  G      + ++H LRE + +E  Y+   C  
Sbjct: 31  SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 87

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV M+ 
Sbjct: 88  KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 146

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +    SG+ +   +     + RP L   +ED+ ++  +  + + ED +N     
Sbjct: 147 VR--GGQLNTFSGIKEVQPFATGRLV-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDV 203

Query: 200 ERVRVRRFV 208
           +R R+R  V
Sbjct: 204 QRNRLRHLV 212


>gi|121586235|ref|ZP_01676025.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80]
 gi|153829935|ref|ZP_01982602.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39]
 gi|121549501|gb|EAX59527.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80]
 gi|148874570|gb|EDL72705.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39]
          Length = 440

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   IL+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADKW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|293553697|ref|ZP_06674321.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1039]
 gi|291602272|gb|EFF32500.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1039]
          Length = 484

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + IL AVSGG DSM LL  L  V   R  G      + ++H LRE + +E  Y+   C  
Sbjct: 34  SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV M+ 
Sbjct: 91  KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +    SG+ +   +     + RP L   +ED+ ++  +  + + ED +N     
Sbjct: 150 VR--GGQLNTFSGIKEVQPFAAGRLV-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDV 206

Query: 200 ERVRVRRFV 208
           +R R+R  V
Sbjct: 207 QRNRLRHLV 215


>gi|170701543|ref|ZP_02892493.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133537|gb|EDT01915.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10]
          Length = 468

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 100/228 (43%), Gaps = 25/228 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVALAYLPADARIAIAYSGGLDSTVLLDA-----TVRMAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122
           A   V +      RL +  +  S +   P+    G+ A+ARE RYA +    +      +
Sbjct: 69  ADAWVAHAQATAERLGV--TFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVATL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
             A   DDQ ETV ++  R     G G++G+            ++   RPFLR  R  + 
Sbjct: 127 WVAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGASVERVRPFLRLLRAQLE 181

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID-LHALYLKMKKFQD 225
            +  QR ++W +D SN D R+ R  +R     ID L  L +    F+D
Sbjct: 182 RYAAQRELAWIDDESNADTRYARNALR-----IDVLPTLAMHFPGFRD 224


>gi|291043882|ref|ZP_06569598.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2]
 gi|291012345|gb|EFE04334.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2]
          Length = 445

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 35  VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 92  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 148 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 205

Query: 204 VRR 206
            R 
Sbjct: 206 FRH 208


>gi|54296810|ref|YP_123179.1| hypothetical protein lpp0850 [Legionella pneumophila str. Paris]
 gi|61216438|sp|Q5X6W4|TILS_LEGPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|53750595|emb|CAH12000.1| hypothetical protein lpp0850 [Legionella pneumophila str. Paris]
          Length = 431

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 36/328 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++V  SGG DS  LL  L S   LS+      +  A+ ++H +   + +  R+   +C  
Sbjct: 20  LIVGFSGGLDSTVLLHVLASTPPLSN------QLLAVHINHGISGNSLNWQRHCEQLCLD 73

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L IA    + +  +    +  AAR ARY   S   +  N  L++  H  DDQ ETV ++ 
Sbjct: 74  LGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQL 130

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G+     C  +       ++RPFL C R ++  +     + W ED SN D ++
Sbjct: 131 FRGAGVDGLAAMQECSNLGAGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKY 187

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R  +R  V       + L ++K+  +   ++ A          + + +I     D+LN 
Sbjct: 188 SRNYLRHRV-------MPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCP-DLLNA 239

Query: 260 DSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306
              LL   ++          +   +   +I LP  ++  R+   ++F K      VS  +
Sbjct: 240 TDHLLIEPIKGLEFERITNVLKFWLKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWNQ 299

Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPE 333
           + + R    L++ +A + NLP  I + +
Sbjct: 300 IQVRRFQQHLYLLKADQINLPKAIKWQQ 327


>gi|262192149|ref|ZP_06050310.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93]
 gi|262031998|gb|EEY50575.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93]
          Length = 440

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   +L+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVTAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|46906451|ref|YP_012840.1| hypoxanthine phosphoribosyltransferase, fusion [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|61216556|sp|Q724J4|TILS_LISMF RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName:
           Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
           Full=Hypoxanthine-guanine phosphoribosyltransferase;
           Short=HGPRT; Short=HGPRTase
 gi|46879715|gb|AAT03017.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes serotype 4b str. F2365]
          Length = 648

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A +E   V   C    
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHHLRENAANEQNVVETFCESQG 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    V  +    Q G+   AR  RY    +         +  AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I  +  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|257886017|ref|ZP_05665670.1| PP-loop family protein [Enterococcus faecium 1,231,501]
 gi|257821873|gb|EEV49003.1| PP-loop family protein [Enterococcus faecium 1,231,501]
          Length = 484

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + IL AVSGG DSM LL  L  V   R  G      + ++H LRE + +E  Y+   C  
Sbjct: 34  SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV M+ 
Sbjct: 91  KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +    SG+ +   +     + RP L   +ED+ ++  +  + + ED +N     
Sbjct: 150 VR--GGQLNTFSGIKEVQPFAAGRLV-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDV 206

Query: 200 ERVRVRRFV 208
           +R R+R  V
Sbjct: 207 QRNRLRHLV 215


>gi|213585404|ref|ZP_03367230.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 168

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Query: 29  GSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS 88
           G DS  LL  L  VL       +   AI + H L   A   VR+   VC R ++   V  
Sbjct: 1   GLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVER 58

Query: 89  WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
              +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R       
Sbjct: 59  VTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR--GSGPA 114

Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           GLS M +   +   L + RP LR  R+ +  + ++  + W ED SN DD ++R
Sbjct: 115 GLSAMGERSPFAGTL-LLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDR 166


>gi|163755244|ref|ZP_02162364.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1]
 gi|161324664|gb|EDP95993.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1]
          Length = 436

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 33/217 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVS 74
           + +L+A+SGG DS+ L   L+         K+ FS I+  HC   LR  E+ +DEV +V 
Sbjct: 19  SKLLIAISGGLDSVVLANLLY---------KLDFS-IAFAHCNFQLRGEESNEDEV-FVK 67

Query: 75  DVCSRLRIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + + L+        +  ++ N + +  +  AAR  RY    E A       I+TAH  D
Sbjct: 68  TLGNSLKAGVFTKKFNTETYANEQ-KLSIQMAARALRYEWFQEIADKFQYDYILTAHHQD 126

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LET  +   R     G G+ G+  T +   N  I RP L   + DI ++    N+ W 
Sbjct: 127 DMLETFLINLSR-----GTGIDGL--TGIPQQNGNIVRPLLPFTQVDILAYAKNNNLLWR 179

Query: 190 EDPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQ 224
           ED SN   ++ R ++R  +  +  +LH  +  MK FQ
Sbjct: 180 EDSSNASTKYVRNKIRHDIVPLLKELHPTF--MKNFQ 214


>gi|86135031|ref|ZP_01053613.1| PP-loop family protein [Polaribacter sp. MED152]
 gi|85821894|gb|EAQ43041.1| PP-loop family protein [Polaribacter sp. MED152]
          Length = 436

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 85/195 (43%), Gaps = 24/195 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE----VRYVS 74
           +L+A+SGG DS+ L    H         ++  + I++ HC   LR  A D     V  +S
Sbjct: 21  LLIAISGGLDSVVLTHLFH---------QLNIAEIALAHCNFKLRNKASDLDEEFVNKLS 71

Query: 75  DVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + S      S  + K S+ Q   +   ARE RY    E         I+TAH  DD LE
Sbjct: 72  QITSNQIFIKSFQTEKISENQKKSIQITARELRYNWFQELMDEHQLDYILTAHHADDNLE 131

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +   R     G GL G   T +  +N  I R  L   R +I +F    NI W ED S
Sbjct: 132 TFLINLTR-----GSGLDGF--TGIPAINGNIVRTLLPFSRSEILNFAKSNNIEWREDAS 184

Query: 194 NTDDRFERVRVRRFV 208
           N   ++ R ++R  V
Sbjct: 185 NASIKYVRNKIRHKV 199


>gi|322378539|ref|ZP_08052987.1| PP-loop family protein [Helicobacter suis HS1]
 gi|322379747|ref|ZP_08054057.1| tRNA(Ile)-lysidine synthase [Helicobacter suis HS5]
 gi|321147818|gb|EFX42408.1| tRNA(Ile)-lysidine synthase [Helicobacter suis HS5]
 gi|321149053|gb|EFX43505.1| PP-loop family protein [Helicobacter suis HS1]
          Length = 346

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 22/200 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS---- 78
           L+  SGG DS+ L   L           + F    +DH LR  +++E+ Y   +      
Sbjct: 17  LLGFSGGGDSVALFFLLKK-------EGVNFDIAILDHGLRAQSQEEIAYAKHLAEKYSK 69

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           R+ I    +S  N      L A  R+ RY+      +  N T ++ AH  +D+LE  +M+
Sbjct: 70  RVHIGQVHLSGSN------LEARYRKERYSFFERIIQEFNYTHLILAHHLNDKLEWFFMQ 123

Query: 139 SQRDYA-EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             +  + +  +G S +   + YDL     RP +  ++  +R +L      + ED +N   
Sbjct: 124 LAKGSSLQTLLGFSALEKRVGYDL----IRPLIYTQKRTLREYLHTNKYRYFEDETNFSP 179

Query: 198 RFERVRVRRFVRDIDLHALY 217
           RF+R   R+ V +  L  ++
Sbjct: 180 RFKRNIFRQCVSNPFLEGVF 199


>gi|54293769|ref|YP_126184.1| hypothetical protein lpl0825 [Legionella pneumophila str. Lens]
 gi|61216435|sp|Q5WYB4|TILS_LEGPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|53753601|emb|CAH15059.1| hypothetical protein lpl0825 [Legionella pneumophila str. Lens]
          Length = 431

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 138/326 (42%), Gaps = 32/326 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS  LL     VL+       +  A+ ++H +   + +  R+   +C  L 
Sbjct: 20  LIVGFSGGLDSTVLL----HVLASTPPLYNQLLAVHINHGISGNSLNWQRHCEQLCLDLG 75

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           IA    + +  +    +  AAR ARY   S   +  N  L++  H  DDQ ETV ++  R
Sbjct: 76  IAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQLFR 132

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+     C  +       ++RPFL C R ++  +     + W ED SN D ++ R
Sbjct: 133 GAGVDGLAAMQECSNLGAGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKYSR 189

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  V       + L ++K+  +   ++ A          + + +I     D+LN   
Sbjct: 190 NYLRHRV-------MPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCP-DLLNATD 241

Query: 262 TLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308
            LL   L+          +   +   ++ LP  ++ +R+   ++F K      VS  ++ 
Sbjct: 242 HLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFQRIIHEIIFAKLDAMPTVSWNQIQ 301

Query: 309 IDRRANFLWITRAVR-NLPTLILYPE 333
           + R    L++ +A + NLP  I + +
Sbjct: 302 VRRFQQHLYLLKADQINLPKAIKWQQ 327


>gi|313203122|ref|YP_004041779.1| tRNA(ile)-lysidine synthetase [Paludibacter propionicigenes WB4]
 gi|312442438|gb|ADQ78794.1| tRNA(Ile)-lysidine synthetase [Paludibacter propionicigenes WB4]
          Length = 441

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 35/228 (15%)

Query: 14  RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-----LRETAK 67
           + L+ P A ++V VSGG+DS+ LL  LH          + +  + V HC     + E+ +
Sbjct: 12  QQLLNPKARVIVGVSGGTDSVVLLHILHV---------LGYECV-VAHCNFHLRMEESDR 61

Query: 68  DE--VRYVSDVCSR--LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           DE  VR +S         I    VS+ + +    +  AAR+ RY    +  K ++A  I 
Sbjct: 62  DEEFVRALSKTMKLPFYSIDFDTVSYAD-RHGISIEMAARDLRYEWFHDLLKKLDAEAIA 120

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  DD +ET+ M   R     G GL G+    +   N  + RP L C R+++ ++L++
Sbjct: 121 VAHHADDSIETMLMNLVR-----GTGLRGLSG--IRPRNKKVIRPLLCCNRQELENYLIR 173

Query: 184 RNISWCEDPSNTDDRFERVRVRRFV----RDID---LHALYLKMKKFQ 224
            ++   ED +N    ++R + R  V     +I+      LY  +K+F+
Sbjct: 174 YDLEHVEDSTNASVDYQRNKFRNEVLPLLEEINPSLRQTLYESLKRFE 221


>gi|254525679|ref|ZP_05137731.1| tRNA(Ile)-lysidine synthase [Prochlorococcus marinus str. MIT 9202]
 gi|221537103|gb|EEE39556.1| tRNA(Ile)-lysidine synthase [Prochlorococcus marinus str. MIT 9202]
          Length = 338

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 20/199 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSDV 76
           ++IL++VSGG DSM LL    ++++D    K+    ISV   DH   E +      +   
Sbjct: 33  SNILISVSGGQDSMALL----NLIND--LKKLHNWTISVWHGDHQWHEKSSLYALELKSY 86

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTFD 129
           C    I+ S    + +K        ARE RY  + E AKT+       +   ++T HT  
Sbjct: 87  CEDKNISFSFD--QANKENISSEEKAREWRYKKLCERAKTVLNKNQQKHNIYLLTGHTSS 144

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  ET  +   R       GLS +    L +  +++ RP L   RED + F     I   
Sbjct: 145 DNAETFILNLSR--GSNFAGLSNIESKRLLENQIFLIRPILIFSREDTKKFCNHMKIPVW 202

Query: 190 EDPSNTDDRFERVRVRRFV 208
           EDP+N+D + +R  VR+ +
Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221


>gi|37680722|ref|NP_935331.1| cell cycle protein MesJ [Vibrio vulnificus YJ016]
 gi|61217308|sp|Q7MIH8|TILS_VIBVY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|37199471|dbj|BAC95302.1| cell cycle protein MesJ [Vibrio vulnificus YJ016]
          Length = 436

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 89/204 (43%), Gaps = 15/204 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL   H    +     +   A+ V H L   A   V+  +  C    
Sbjct: 22  LVVAFSGGVDSRVLLELAHRYAQEH---LLPCCAVHVHHGLSHNADQWVQSCAAWCQEKN 78

Query: 82  IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINAT-LIMTAHTFDDQLETVYMRS 139
           I  +V   +    Q   +   AR ARY  +  H   INA  L++T    DDQ+ET  +  
Sbjct: 79  IPLTVERVQLDLTQGNSIEEEARNARYQALRAH---INADDLLLTGQHADDQVETFLLAL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M   + +     I RP L  RR++I        ++W ED SN D R+
Sbjct: 136 KRGSGPKG--LSSMAQQMPFSQGRLI-RPLLDVRRQEIERCAHAIGLNWVEDESNQDTRY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223
           +    R F+R   L AL  +   F
Sbjct: 193 D----RNFLRQQILPALSERWPSF 212


>gi|289565044|ref|ZP_06445498.1| tRNA(Ile)-lysidine synthase TilS [Enterococcus faecium D344SRF]
 gi|294614895|ref|ZP_06694786.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1636]
 gi|289163251|gb|EFD11097.1| tRNA(Ile)-lysidine synthase TilS [Enterococcus faecium D344SRF]
 gi|291592181|gb|EFF23799.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1636]
          Length = 484

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 7/189 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + IL AVSGG DSM LL  L  V   R  G      + ++H LRE + +E  Y+   C  
Sbjct: 34  SRILAAVSGGVDSMVLLHLLLQV--QRQIG-FSLGIVHINHQLREESAEEAAYLRSYCEE 90

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV M+ 
Sbjct: 91  KNLPLYVSIWEDP-AKSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVLMKI 149

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +    SG+ +   +     + RP L   +ED+ ++  +  + + ED +N     
Sbjct: 150 VR--GGQLNTFSGIKEVQPFATGRLV-RPLLSFSKEDLYTYAAESQLVYFEDQTNQLLDV 206

Query: 200 ERVRVRRFV 208
           +R R+R  V
Sbjct: 207 QRNRLRHLV 215


>gi|268601288|ref|ZP_06135455.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18]
 gi|268585419|gb|EEZ50095.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18]
          Length = 436

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 139 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 196

Query: 204 VRR 206
            R 
Sbjct: 197 FRH 199


>gi|329925517|ref|ZP_08280391.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. HGF5]
 gi|328939800|gb|EGG36140.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. HGF5]
          Length = 476

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 9/188 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DS+ LL  LH +   R+   ++     V H  R  +  E   V ++   LR
Sbjct: 29  IVVAVSGGPDSVALLHVLHEISMHRT--PLRLICAHVHHGFRRESDQEAEMVRELAESLR 86

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    A   +     +   G   AARE RY  + + A+  NA  +  AH  DDQ ETV+M
Sbjct: 87  LPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTARKHNARSVALAHHADDQAETVFM 146

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+G      T   +  + + RPFLR  + DI          +  D SN   
Sbjct: 147 RLLRGSGLSGLGGIKFKRT---EKKVELIRPFLRMYKADIVELCRVCGFQYAVDHSNLQT 203

Query: 198 RFERVRVR 205
           ++ R  +R
Sbjct: 204 KYRRNAIR 211


>gi|229489828|ref|ZP_04383685.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121]
 gi|229323338|gb|EEN89102.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121]
          Length = 325

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 17/199 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++VR +  +       +VA+SGG+DS+ L  A  +V    S       A+ VDH L++ +
Sbjct: 14  QAVRAWTVAFEPRRRAVVALSGGADSLALTAA--AVAETDSV-----DALIVDHRLQDGS 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               R  +D    L    + V   +      L AAAREARY+ + +    +    ++  H
Sbjct: 67  DAVARSAADQALALGCRTATVLTVDVAEGGSLEAAAREARYSALRDARTDLP---VLLGH 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R     G  + GM     +D   W  RP L  RR   R+  +   I
Sbjct: 124 TLDDQAETVLLGLSR--GSGGRSIQGMA---AFDAP-W-GRPLLGIRRSVTRAACVDLGI 176

Query: 187 SWCEDPSNTDDRFERVRVR 205
           +  EDP N +  F RVR+R
Sbjct: 177 TPWEDPHNNNPEFTRVRLR 195


>gi|86157919|ref|YP_464704.1| tRNA(Ile)-lysidine synthetase-like [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774430|gb|ABC81267.1| tRNA(Ile)-lysidine synthetase-like protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 451

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 12/193 (6%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L  PA  +LVA+SGG+DS  LL AL ++    +  +++  A+ +DH LR  ++ E   
Sbjct: 20  RRLFGPADRVLVALSGGADSTALLAALAALRDAGALAEVR--ALYLDHGLRTGSEPEAAS 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               C+RL +   +   + +     + A AR  RYA + E A    +T I T HT  DQ 
Sbjct: 78  ARGACARLGV--PLEERRLAVKAGNVQAEARRVRYAALREAAARAGSTRIATGHTLGDQA 135

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +R  R    +G+         +      + RP +   RE+  ++L    + W +DP
Sbjct: 136 ETVLLRLLRGAGARGL-------AAIPPRRGEVIRPLIDRTREEGNAYLRALGLGWGDDP 188

Query: 193 SNTDDRFERVRVR 205
           +N   R+ R R+R
Sbjct: 189 TNAAPRYARNRLR 201


>gi|297580884|ref|ZP_06942809.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC385]
 gi|297534710|gb|EFH73546.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC385]
          Length = 440

 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   +L+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|261400234|ref|ZP_05986359.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970]
 gi|269210035|gb|EEZ76490.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970]
          Length = 411

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 1   MALSGGLDSV---VLLHLLVRAGKKGGFIPEAVHIHHGLSPRADDWADFCQNYCDMLGVR 57

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 58  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 113

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 114 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 171

Query: 204 VR 205
            R
Sbjct: 172 FR 173


>gi|261245468|emb|CBG23258.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301156863|emb|CBW16339.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
          Length = 403

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 5/151 (3%)

Query: 51  IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110
           +   AI + H L   A   VR+   VC R ++   V     +    G+ A AREARY   
Sbjct: 16  VTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGLGIEAHAREARYRAF 75

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           ++    +   ++ TA   DDQ ET  +  +R     G  LS M +   +   L + RP L
Sbjct: 76  AQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAG--LSAMGERSPFAGTL-LLRPLL 130

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           R  R+ +  + ++  + W ED SN DD ++R
Sbjct: 131 RETRKTLEQWAVRHGLCWIEDESNQDDAYDR 161


>gi|229524245|ref|ZP_04413650.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229337826|gb|EEO02843.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae bv. albensis VL426]
          Length = 440

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   +L+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|312864100|ref|ZP_07724335.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis F0396]
 gi|311100332|gb|EFQ58540.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis F0396]
          Length = 280

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 22/187 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+       +
Sbjct: 21  ILVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEYEEDYLRHWAKEHK 77

Query: 82  I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I   +S  S K S+       AAR  RY    +  K  + + ++TAH  DDQ ET++MR 
Sbjct: 78  IPFHYSAFSGKFSEN------AARTFRYDFFKQIMKEADYSALVTAHHADDQAETIFMRL 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDPSNTDDR 198
            R    +   LSG+CD   +     I RPFL   +        Q  I++  ED SN+   
Sbjct: 132 LR--GSRLRHLSGICDVRSFGTG-QIIRPFLHIPKA-------QLPITFHFEDKSNSSLA 181

Query: 199 FERVRVR 205
           + R R+R
Sbjct: 182 YLRNRIR 188


>gi|307720468|ref|YP_003891608.1| tRNA(Ile)-lysidine synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306978561|gb|ADN08596.1| tRNA(Ile)-lysidine synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 330

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 26/191 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S G DS  LL  L           I F    VD+  RE +K+EV Y   +  +   
Sbjct: 16  LLAFSAGGDSTALLFMLLE-------NNIPFDIAIVDYGTREQSKEEVAYAKALAKQYNF 68

Query: 83  AHSVVSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             +V   K  + ++   A AR+ RY     LI EH    +   ++TAH   D+ E + M+
Sbjct: 69  TCNVHQAK--EIESNFEANARKIRYDFFETLIQEH----DYDTLLTAHHLGDRFEWMLMQ 122

Query: 139 SQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                  KG G   L+GM +  L +    + RP L   ++++  +L   NI + ED SN+
Sbjct: 123 FC-----KGAGCAELAGMQEKALRN-GYILYRPLLHVDKQELLEYLHGNNIKYFEDKSNS 176

Query: 196 DDRFERVRVRR 206
           D+++ R   R 
Sbjct: 177 DEKYTRNTFRH 187


>gi|218710301|ref|YP_002417922.1| tRNA(Ile)-lysidine synthase [Vibrio splendidus LGP32]
 gi|254764823|sp|B7VIQ1|TILS_VIBSL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|218323320|emb|CAV19497.1| tRNA(Ile)-lysidine synthase [Vibrio splendidus LGP32]
          Length = 456

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 11/197 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +S + P+ ++VA SGG DS  +L+ L +  + ++ G I+  A+ V H L + A       
Sbjct: 14  QSALKPSRLIVAFSGGVDSR-VLLELAAQYA-QTHG-IECCAVHVHHGLSKNADLWAEQC 70

Query: 74  SDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              C  L ++ +V  VS   +  ++ +   AR+ARY    +H +     +++T    DDQ
Sbjct: 71  QTWCDALSVSLAVERVSLDINCGES-VEKLARDARYQAFQQHIR--QGDVLVTGQHIDDQ 127

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET  +  +R    KG  LS M   + +    +I RP L   R DI +      ++W ED
Sbjct: 128 LETFLLALKRGSGPKG--LSSMAKVMSFG-EAFIVRPLLSVTRLDIEASAHDMGLTWVED 184

Query: 192 PSNTDDRFERVRVRRFV 208
            SN D RF+R  +R  V
Sbjct: 185 ESNQDLRFDRNFIRHQV 201


>gi|254854449|ref|ZP_05243797.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300766352|ref|ZP_07076311.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017]
 gi|258607849|gb|EEW20457.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300512951|gb|EFK40039.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017]
          Length = 648

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 81/188 (43%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A +E   V   C    
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHLNHHLRENAANEQNVVEAFCESQG 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    V  +    Q G+   AR  RY    +         +  AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I  +  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|107103152|ref|ZP_01367070.1| hypothetical protein PaerPA_01004221 [Pseudomonas aeruginosa PACS2]
          Length = 442

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 81/189 (42%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80
           VA SGG DS  LL  L  V   RS      SA+ V H L+  A     +   VC  L   
Sbjct: 25  VAFSGGLDSTVLLHLL--VQLARSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R+    V+   S  Q     AAR+ARY      A      +++TA   DDQ ET+  R 
Sbjct: 83  LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+       ++       + RP L   R ++ ++     + W EDPSN D RF
Sbjct: 136 LRGAGLRGLAAMPASRSLGGGR---LCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRF 192

Query: 200 ERVRVRRFV 208
            R  +RR +
Sbjct: 193 SRNYLRREI 201


>gi|325202116|gb|ADY97570.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240149]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKICVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186

Query: 204 VR 205
            R
Sbjct: 187 FR 188


>gi|23097532|ref|NP_690998.1| cell-cycle protein [Oceanobacillus iheyensis HTE831]
 gi|61216653|sp|Q8EU18|TILS_OCEIH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|22775755|dbj|BAC12033.1| cell-cycle protein [Oceanobacillus iheyensis HTE831]
          Length = 466

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 17/190 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC- 77
           A I+V VSGGSDSM LL   H + + +   +I+  A++++H LR E +  + ++V   C 
Sbjct: 19  AKIIVGVSGGSDSMALL---HFLKNLQEQWEIEVIALTINHQLRGEDSTADQKFVEQWCF 75

Query: 78  -SRLR-IAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            S +R IAH V V     + +     AAR  RY +     +   A  +   H  DDQ+ET
Sbjct: 76  HSDIRCIAHQVDVGEYQRQYRVSEELAARRLRYEIYEAEMRKQGADYLALGHHGDDQVET 135

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCED 191
           ++MR  R      +  S   + I    +     + RPFL   ++ I +++ +  + + ED
Sbjct: 136 LFMRLTR------VATSNAFEGIPVKRSFASGQLIRPFLCVNKQLILNYVKENEVPFRED 189

Query: 192 PSNTDDRFER 201
            +N D+++ R
Sbjct: 190 QTNKDNKYTR 199


>gi|325917349|ref|ZP_08179566.1| tRNA(Ile)-lysidine synthetase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536436|gb|EGD08215.1| tRNA(Ile)-lysidine synthetase [Xanthomonas vesicatoria ATCC 35937]
          Length = 434

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 9/184 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +L+A SGG DS  LL AL ++ + R  G     A+ V H L   A     +    C+
Sbjct: 14  PGPVLIAYSGGMDSGVLLHALAALPAYRDRG---LRALHVHHGLHADADAWAAHCQRTCA 70

Query: 79  RLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            L++   +V  + ++ +  GL AAAR+AR+   +E      A  +  AH  DDQ ET  +
Sbjct: 71  GLQVPLQIVRVQVARDRGLGLEAAARQARHTAFAE--ILAPAEWLALAHHRDDQAETFLL 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ R     G+    +       + LW  RP L   R D++++     + W +DPSNTD 
Sbjct: 129 RALRASGPDGLAAMRIQRPFAQGI-LW--RPLLAHARADLQAYARLHALHWIDDPSNTDA 185

Query: 198 RFER 201
           R++R
Sbjct: 186 RYDR 189


>gi|254302226|ref|ZP_04969584.1| PP loop family cell cycle protein MesJ [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322418|gb|EDK87668.1| PP loop family cell cycle protein MesJ [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 448

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   + F   K   + ++H LR E A  +  +  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---QHFFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    + G  L    RE RY   SE  + + AT I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEIAKEIGKTLEEVGREERYKFFSEIYEKVRATKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G  L G+    + + N  + RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIR-----GTSLQGLEGIKIKNNN--VIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|91214572|ref|ZP_01251545.1| putative cell-cycle protein [Psychroflexus torquis ATCC 700755]
 gi|91186999|gb|EAS73369.1| putative cell-cycle protein [Psychroflexus torquis ATCC 700755]
          Length = 437

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 113/244 (46%), Gaps = 22/244 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A+SGG DS+ L    +S+  D       F    +D     + +DE  +V ++   L+ 
Sbjct: 22  LIAISGGLDSVVLAHLCNSLHLDFGLSHCNFQLRGLD-----STRDE-EFVENLSISLKC 75

Query: 83  AHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              + +++      + ++ +   AR+ RY    E  +T +   ++TAH  +D LET  + 
Sbjct: 76  EFFIKTFQTESIAKESKSSIQLTARKLRYDWFQELIETTSHNYLLTAHHLNDDLETFIIN 135

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GL G+  T +   N  I RP L+  + +++ + ++ NI W ED SN   +
Sbjct: 136 LSR-----STGLKGL--TGIPQRNSHILRPLLKFSKAELKEYAIKHNIYWREDQSNASTK 188

Query: 199 FERVRVRRFVRD--IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           + R  +R  +    ++L++ +L  + F+    K+      LI  Y     +S+++   + 
Sbjct: 189 YLRNEIRHKIVPSLLELNSQFL--ESFESTLEKL-KQTEHLIKDYTASLHQSLVSEEANR 245

Query: 257 LNID 260
            NID
Sbjct: 246 FNID 249


>gi|91792927|ref|YP_562578.1| tRNA(Ile)-lysidine synthetase-like protein [Shewanella
           denitrificans OS217]
 gi|91714929|gb|ABE54855.1| tRNA(Ile)-lysidine synthetase-like protein [Shewanella
           denitrificans OS217]
          Length = 476

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 10/188 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS- 78
           A +++A SGG DS  L   L   L  +   +I    + V H L   A     +     + 
Sbjct: 27  AKLVLAYSGGVDSEVLAAGL--SLFSQFHPEIDCRLLHVHHGLSAHADSWTEHCRKRAAF 84

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L +    VS +  K ++ L A AR ARY  I++H    +  +++TAH  DDQLET+ +
Sbjct: 85  YGLPLIVEKVSVQKGKRES-LEAKARAARYHAIAQHLHQND--ILLTAHHEDDQLETLLL 141

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             +R    KG+   G C       + W+ RP L   R+ I +      +   ED SN DD
Sbjct: 142 ALKRGQGPKGLAAMGECQR---KDHYWLLRPLLSVSRQQIEALAASEALVHIEDDSNQDD 198

Query: 198 RFERVRVR 205
            F+R  +R
Sbjct: 199 SFDRNFLR 206


>gi|226304109|ref|YP_002764067.1| tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4]
 gi|259533748|sp|C0ZNS6|TILS_RHOE4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226183224|dbj|BAH31328.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4]
          Length = 325

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 17/199 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++VR +  +      ++VA+SGG+DS+ L  A  +V    S       A+ VDH L+  +
Sbjct: 14  QAVRAWTVAFEPRRRVVVALSGGADSLALTAA--AVAETDSV-----DALIVDHRLQPGS 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               R  +D    L    + V   +      L AAAREARY+ + +    +    ++  H
Sbjct: 67  DAVARSAADQALALGCRTATVLTVDVAEGGSLEAAAREARYSALRDARTDLP---VLLGH 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R     G  + GM     +D   W  RP L  RR   R+  +   I
Sbjct: 124 TLDDQAETVLLGLSR--GSGGRSIQGMA---AFDAP-W-GRPLLGIRRSVTRAACVDLGI 176

Query: 187 SWCEDPSNTDDRFERVRVR 205
           +  EDP N +  F RVR+R
Sbjct: 177 TPWEDPHNNNPEFTRVRLR 195


>gi|310639528|ref|YP_003944286.1| tRNA(ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
 gi|309244478|gb|ADO54045.1| tRNA(Ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
          Length = 482

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 14/191 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+VAVSGG DS+ LL  LH +        ++     V H  R E +  E   V ++  +L
Sbjct: 29  IVVAVSGGPDSVALLHILHEI--SVIHMPLQLVCAHVHHGFRPEESDAEAEEVHNIARKL 86

Query: 81  RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           ++   ++         +   G   AARE RY+ + + A    A  I  AH  DDQ ETV 
Sbjct: 87  KLPFEMIRVDAPAYMKESGKGPQEAARELRYSFLHDTATKWKAQHIAMAHHGDDQAETVL 146

Query: 137 MRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +   R     G G +G+    L   + N+ + RP LR  + D+  +      S+  D +N
Sbjct: 147 LHLLR-----GSGPAGLAGMRLARNEKNVQLIRPLLRMYKADLIEYCNFHGFSYVTDSTN 201

Query: 195 TDDRFERVRVR 205
              ++ R  +R
Sbjct: 202 LSSKYRRNAIR 212


>gi|325198322|gb|ADY93778.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis G2136]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    I    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 186

Query: 204 VR 205
            R
Sbjct: 187 FR 188


>gi|325130238|gb|EGC53008.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis OX99.30304]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKICVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186

Query: 204 VR 205
            R
Sbjct: 187 FR 188


>gi|325128268|gb|EGC51153.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis N1568]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 129 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186

Query: 204 VR 205
            R
Sbjct: 187 FR 188


>gi|154483317|ref|ZP_02025765.1| hypothetical protein EUBVEN_01018 [Eubacterium ventriosum ATCC
           27560]
 gi|149735827|gb|EDM51713.1| hypothetical protein EUBVEN_01018 [Eubacterium ventriosum ATCC
           27560]
          Length = 502

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 98/246 (39%), Gaps = 69/246 (28%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L Y   +++ VSGG+DS+ +L  L  + S+ +   +    + ++H +R + A+ +  YV 
Sbjct: 15  LQYGDSVILGVSGGADSICMLYLLKDISSEMN---LTLYVVHINHHIRGKQAQHDADYVK 71

Query: 75  DVCSRLRIAHSVVSWKNSKP----QTGLMA--AAREARYALISEHA-------------- 114
           DVC +L +    +      P    QTG+    A R+ARY    E A              
Sbjct: 72  DVCRKLNVDFKQIDA--DVPLMVKQTGMTEEEAGRQARYKAFFERAIEVKIKEKKQAKNQ 129

Query: 115 ----------------------------------KTINATLIMTAHTFDDQLETVYMRSQ 140
                                              + N   I  AH  +D  ETV     
Sbjct: 130 TKKPDESRKLSLKENKENSAKEDGIKKNDPKERKNSYNNIKIAVAHNLNDNSETVLFNLF 189

Query: 141 RDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R     G G+ G+    +  D+   I RP L C R++I  +L  +NIS+C D +N +  +
Sbjct: 190 R-----GTGIKGLTGIPVRRDM---IVRPLLCCTRQEIEHYLKSKNISYCSDATNKETEY 241

Query: 200 ERVRVR 205
            R ++R
Sbjct: 242 SRNKIR 247


>gi|319410441|emb|CBY90801.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase;
           tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria
           meningitidis WUE 2594]
          Length = 436

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 139 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196

Query: 204 VR 205
            R
Sbjct: 197 FR 198


>gi|255994856|ref|ZP_05427991.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Eubacterium saphenum ATCC 49989]
 gi|255993569|gb|EEU03658.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Eubacterium saphenum ATCC 49989]
          Length = 351

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 24/203 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           ++V +SGG DS+ LL  L+ +  D         A+ +DH LR    D +  +    C   
Sbjct: 24  VVVGLSGGPDSVALLHCLNELGYD-------CIAVHIDHSLRGCESDGDAEFARTFCHDR 76

Query: 81  RIAHSVVSW---KNSKPQT-GLMAAAREARYALISEHAKTINA----TLIMTAHTFDDQL 132
            I   +  +   + +K +  G+  AAR  RY + +  A    A      I  A   +DQ+
Sbjct: 77  DIPFKMFKFDCKRYAKEEALGVEEAARNKRYEVFAAVADGFIAQGKNVCIAVAQNQNDQV 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISWC 189
           ET+ MR  R     G G+ G+C   +         I RP L   REDI +FL + NI + 
Sbjct: 137 ETLIMRLIR-----GTGIEGLCGIDVKRKSRTGASIVRPILNKSREDIMAFLEEENIPYR 191

Query: 190 EDPSNTDDRFERVRVRRFVRDID 212
            D SN++  + R RVR  +  ID
Sbjct: 192 LDSSNSEPDYFRNRVRLALARID 214


>gi|89075403|ref|ZP_01161820.1| hypothetical cell cycle protein MesJ [Photobacterium sp. SKA34]
 gi|89048819|gb|EAR54389.1| hypothetical cell cycle protein MesJ [Photobacterium sp. SKA34]
          Length = 438

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 98  LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
           L  AAREARY ++++H       +++TA   DDQ+ET  +  +R       GL+ M   +
Sbjct: 100 LEQAAREARYNILAQHVN--KGDMLLTAQHSDDQIETFLLALKR--GSGPAGLAAMPTIL 155

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            +   + + RP L  +R DI  + L   +SW ED SN D+R++R  +R  +
Sbjct: 156 PFAKGMHL-RPLLNIKRSDIEQYGLDHKLSWVEDESNQDERYDRNFIRHQI 205


>gi|325142381|gb|EGC64790.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis 961-5945]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    I    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 186

Query: 204 VR 205
            R
Sbjct: 187 FR 188


>gi|213156069|ref|YP_002318114.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB0057]
 gi|215484603|ref|YP_002326838.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB307-0294]
 gi|213055229|gb|ACJ40131.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB0057]
 gi|213986972|gb|ACJ57271.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB307-0294]
          Length = 424

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L++ + +    V+   + L I + +   K       L A AR+ARY    
Sbjct: 14  KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 71

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169
           +H +     +++ AH   DQ ETV +R        G G+ G+     I Y  ++ I RPF
Sbjct: 72  QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 124

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           L   RE I  +  Q  + + +DP N D+ ++RV  R 
Sbjct: 125 LDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCRE 161


>gi|325208130|gb|ADZ03582.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis NZ-05/33]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 129 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186

Query: 204 VR 205
            R
Sbjct: 187 FR 188


>gi|256370688|ref|YP_003108513.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009480|gb|ACU52840.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 438

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 26/210 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           I VAVS G DSM +L  L    +           I V HC   LR  ++ KDE  ++ + 
Sbjct: 22  IYVAVSSGLDSMVMLDLLLKSCN---------HPIGVIHCNFNLRGDDSDKDEF-FIQEF 71

Query: 77  CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C +  +     ++K      K +  +   AR+ RY              I   H  DD +
Sbjct: 72  CLKNNLNFKSKNFKTPTIRRKTKFSIQMIARKLRYDWFKFLLNNSYCDYIALGHHLDDSI 131

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET ++   R     G G+ G+     +  N  I RP     +++IRS+  + NI W ED 
Sbjct: 132 ETFFINIIR-----GTGIKGLIGINNFKKN--IIRPLFLFSKKEIRSYAKENNIHWREDI 184

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           SN D ++ R ++R F++ I  +  Y   KK
Sbjct: 185 SNNDLKYLRNKIRFFLKPILNYKFYNGFKK 214


>gi|254671868|emb|CBA04090.1| cell cycle protein [Neisseria meningitidis alpha275]
          Length = 436

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 139 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196

Query: 204 VR 205
            R
Sbjct: 197 FR 198


>gi|325136324|gb|EGC58932.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M0579]
          Length = 436

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 139 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196

Query: 204 VR 205
            R
Sbjct: 197 FR 198


>gi|318061598|ref|ZP_07980319.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. SA3_actG]
          Length = 304

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 15/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G I+   ++VDH L+E +      V+   + LR
Sbjct: 5   VLVACSGGADSMALASAL--AFEAPRLG-IRAGGVTVDHRLQEGSGRRAAEVAARLTALR 61

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    A +V   +   P+     A   A  A+  +H     A  I+  HT DDQ ETV +
Sbjct: 62  LTPVEAVAVDVGRAGGPEAAAREARYAALDAVAEKH----GAAAILLGHTRDDQAETVLL 117

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +   LSGM +  +        RPFLR  R+  R   + +++   +DP NTD 
Sbjct: 118 GLARGSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTARKACMVQSLPVWDDPHNTDP 173

Query: 198 RFERVRVR 205
            + R R+R
Sbjct: 174 AYTRSRLR 181


>gi|325138171|gb|EGC60742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ES14902]
          Length = 426

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    I    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 186

Query: 204 VR 205
            R
Sbjct: 187 FR 188


>gi|307243197|ref|ZP_07525370.1| tRNA(Ile)-lysidine synthetase [Peptostreptococcus stomatis DSM
           17678]
 gi|306493458|gb|EFM65438.1| tRNA(Ile)-lysidine synthetase [Peptostreptococcus stomatis DSM
           17678]
          Length = 459

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           I+V +SGG DS+ LL  L+ +  ++    IK  A+ ++H +R   A  +  YV  +C  L
Sbjct: 22  IVVGLSGGPDSVCLLHTLYRLSKEKD---IKIYAVHLNHMIRGLDAFLDSLYVMKLCQSL 78

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   +    V     + + GL   AR+ RY + SE    + A  I   H  +DQ ET+ 
Sbjct: 79  YIPCFIRTIDVPKYCQENKLGLEDGARKLRYQVFSEVRDRLGAKKIAIGHNKNDQAETIL 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G GL G+   I Y     + RP L   RE I ++ ++  +    D SN +
Sbjct: 139 MRIMR-----GTGLQGLR-GIEYKRKDGVIRPILDIDRESIEAYCMEHKLLPRIDSSNLE 192

Query: 197 DRFERVRVR 205
             + R ++R
Sbjct: 193 PIYSRNKIR 201


>gi|307128621|ref|YP_003880651.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           CARI]
 gi|306483083|gb|ADM89953.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           CARI]
          Length = 432

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 26/209 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           I V+VS G DSM LL  L  + +           I V HC   LR  ++ KDE+ ++ + 
Sbjct: 22  IYVSVSSGLDSMVLLDVLMKICN---------IPICVIHCNFNLRGNDSEKDEL-FIQEF 71

Query: 77  CSRLRIAHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           C + +I      +   NS     +   AR+ RY              I   H  DD +ET
Sbjct: 72  CLKNKIFFKSKKFNTINSNSNFSIQMMARKFRYDWFKYLLNNSYCDYIALGHNLDDSIET 131

Query: 135 VYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++   R    KG+ G++   + I+        RP     +++I S+  +  I W ED S
Sbjct: 132 FFINLIRGTGIKGLIGINNFKNQII--------RPLSFFLKKEIISYANENKIKWREDIS 183

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           N D ++ R R+R F++ I  +  Y   KK
Sbjct: 184 NYDHKYLRNRIRFFLKPILDYKFYNGFKK 212


>gi|301344692|ref|ZP_07225433.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB056]
 gi|301510194|ref|ZP_07235431.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB058]
 gi|301595522|ref|ZP_07240530.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB059]
 gi|332856879|ref|ZP_08436288.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013150]
 gi|332867219|ref|ZP_08437484.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013113]
 gi|332726933|gb|EGJ58438.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013150]
 gi|332734158|gb|EGJ65290.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013113]
          Length = 427

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L++ + +    V+   + L I + +   K       L A AR+ARY    
Sbjct: 17  KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 74

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169
           +H +     +++ AH   DQ ETV +R        G G+ G+     I Y  ++ I RPF
Sbjct: 75  QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 127

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           L   RE I  +  Q  + + +DP N D+ ++RV  R 
Sbjct: 128 LDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCRE 164


>gi|260578435|ref|ZP_05846349.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734]
 gi|258603457|gb|EEW16720.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734]
          Length = 351

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 20/194 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + V +SGG+DS+ L+   H +L       +K  A+ VDH L+E +    R  ++    
Sbjct: 41  AGVAVGLSGGADSLALV---HGLLRC----GVKVHAVVVDHQLQEASAQVARQAAETAMS 93

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L  +  + + +      G    AR+ARY  +   A       ++ AHT DD  E + +  
Sbjct: 94  LGASAEIRTVEVEGLGEG---PARQARYQALGTAAA---GRPLLVAHTADDDAEGLLIGL 147

Query: 140 QRDYAEKGMGLSGM----CDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            R    +   ++GM     D    D    W+ RP L C R +  +      ++W EDP N
Sbjct: 148 VRGSGAEA--IAGMRSVHTDHAAVDAGAAWLGRPLLNCTRAETEAECRAAGLNWWEDPHN 205

Query: 195 TDDRFERVRVRRFV 208
           + D + R R+R  V
Sbjct: 206 SSDAYLRSRIRTRV 219


>gi|269101956|ref|ZP_06154653.1| tRNA(Ile)-lysidine synthetase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161854|gb|EEZ40350.1| tRNA(Ile)-lysidine synthetase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 467

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 19/199 (9%)

Query: 16  LVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           L YP H   +++A SGG DS  LL  +   +++      +  A+ V H L   A +    
Sbjct: 43  LAYPHHSKRLIIAFSGGVDSRVLLELVARFIAEHP--DYQAHAVYVHHGLSAHADE---- 96

Query: 73  VSDVCSRLRIAHSV-VSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHT 127
               C R   ++ +  + +  + +TG    +   AR+ARY  +S H       +++TA  
Sbjct: 97  WGIKCQRWAESYGISFTLERVQLETGARVSIEQVARQARYHALSTHMNL--GDILLTAQH 154

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ+ET  +  +R     G+         +   +   +RP L  RR +I  F L   + 
Sbjct: 155 ADDQIETFMLALKRGSGPTGLAAMPQWQRFVLGFH---ARPLLTTRRAEIVQFALDHQLD 211

Query: 188 WCEDPSNTDDRFERVRVRR 206
           W ED SN D R++R  +R 
Sbjct: 212 WVEDESNQDTRYDRNFLRH 230


>gi|159899546|ref|YP_001545793.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892585|gb|ABX05665.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 486

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 32/222 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE+       L   A ++VAVSGG DS+ LL  L ++ +   +   +     +DH LR E
Sbjct: 7   IETTLIRDGRLASAACLVVAVSGGPDSLALLHRLTALATPYGW---RLHVAHLDHGLRGE 63

Query: 65  TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  E  +V+++ +   +  ++    V     +   GL AAAR  RY  ++E A    A 
Sbjct: 64  QSAAEAAFVAEIAADWGLTATIELRDVDQVAKQYHVGLPAAARATRYRFLAEVALQQQAD 123

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-------------- 166
            ++  H  DDQ ETV +     +  +G G SG+  + +     W+               
Sbjct: 124 AVVLGHQSDDQAETVLL-----HVLRGTGPSGL--SAMRPRTEWVGWRVTAGMPHQAVGP 176

Query: 167 ---RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
              RP L   R++I ++  ++ +    DP+N    + R R+R
Sbjct: 177 ALIRPMLNITRDEIEAYCDEQQLEPRRDPTNNSLEYTRGRIR 218


>gi|325204175|gb|ADY99628.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240355]
          Length = 426

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKICVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 129 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 186

Query: 204 VRR 206
            R 
Sbjct: 187 FRH 189


>gi|296106371|ref|YP_003618071.1| cell cycle protein MesJ [Legionella pneumophila 2300/99 Alcoy]
 gi|295648272|gb|ADG24119.1| cell cycle protein MesJ [Legionella pneumophila 2300/99 Alcoy]
          Length = 433

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 36/328 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++V  SGG DS  LL  L S   LS+      +  A+ ++H +   + +  R+   +C  
Sbjct: 22  LIVGFSGGLDSTVLLHVLASTPPLSN------QLLAVHINHGISGNSLNWQRHCEQLCLD 75

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L IA    + +  +    +  AAR ARY   S   +  N  L++  H  DDQ ETV ++ 
Sbjct: 76  LGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G+     C  +       ++RPFL C R ++  +     + W ED SN D ++
Sbjct: 133 FRGAGVDGLAAMQECSNLGVGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKY 189

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R  +R  V       + L ++K+  +   ++ A          + + +I     D+LN 
Sbjct: 190 SRNYLRHRV-------MPLLLEKWPGVVGNISRAATHCQQAKANLEVLAIKDCP-DLLNA 241

Query: 260 DSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306
              LL   L+          +   +   ++ LP  ++  R+   ++F K      VS  +
Sbjct: 242 TDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFHRIVHEIIFAKLDAMPTVSWDQ 301

Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPE 333
           + + R    L++ +A + NLP  I + +
Sbjct: 302 IQVRRFQQHLYLLKADQINLPKAIKWQQ 329


>gi|108801739|ref|YP_641936.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS]
 gi|119870890|ref|YP_940842.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS]
 gi|108772158|gb|ABG10880.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS]
 gi|119696979|gb|ABL94052.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS]
          Length = 320

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 87/203 (42%), Gaps = 20/203 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E  RF  R L       VA+SGG+DS+    AL +V +D     +  +A+ VDH L+  +
Sbjct: 13  EVARFARRHLAGTQRWCVALSGGADSL----ALTAVAAD----ILPTTALIVDHGLQPDS 64

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTINATLIMTA 125
                       RL  A + V   +     G  AAAR ARY AL + H        ++  
Sbjct: 65  AAVAETARAEALRLGCADAHVLRVDVGTSGGPEAAARTARYGALRAAH----GGAPVLLG 120

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV +   R    + +    +CD   Y       RP L  RR    +   +  
Sbjct: 121 HTLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWY-------RPLLGVRRAATAAACTELG 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           +    DP N+D R+ R R+R  V
Sbjct: 174 LHPWVDPHNSDPRYTRSRLRTEV 196


>gi|148360562|ref|YP_001251769.1| cell cycle protein MesJ [Legionella pneumophila str. Corby]
 gi|148282335|gb|ABQ56423.1| cell cycle protein MesJ [Legionella pneumophila str. Corby]
          Length = 431

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 139/328 (42%), Gaps = 36/328 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++V  SGG DS  LL  L S   LS+      +  A+ ++H +   + +  R+   +C  
Sbjct: 20  LIVGFSGGLDSTVLLHVLASTPPLSN------QLLAVHINHGISGNSLNWQRHCEQLCLD 73

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L IA    + +  +    +  AAR ARY   S   +  N  L++  H  DDQ ETV ++ 
Sbjct: 74  LGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLLED-NDCLVL-GHHLDDQAETVLLQL 130

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G+     C  +       ++RPFL C R ++  +     + W ED SN D ++
Sbjct: 131 FRGAGVDGLAAMQECSNLGVGQ---LARPFLTCPRVELEHYARIHELKWIEDESNQDTKY 187

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R  +R  V       + L ++K+  +   ++ A          + + +I     D+LN 
Sbjct: 188 SRNYLRHRV-------MPLLLEKWPGVVGNISRAATHCQQAKANLEVLAIKDCP-DLLNA 239

Query: 260 DSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGR 306
              LL   L+          +   +   ++ LP  ++  R+   ++F K      VS  +
Sbjct: 240 TDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFHRIVHEIIFAKLDAMPTVSWDQ 299

Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPE 333
           + + R    L++ +A + NLP  I + +
Sbjct: 300 IQVRRFQQHLYLLKADQINLPKAIKWQQ 327


>gi|254493722|ref|ZP_05106893.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291]
 gi|268598934|ref|ZP_06133101.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11]
 gi|268603613|ref|ZP_06137780.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1]
 gi|268682089|ref|ZP_06148951.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332]
 gi|268684299|ref|ZP_06151161.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679]
 gi|268686557|ref|ZP_06153419.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399092|ref|ZP_06643257.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62]
 gi|226512762|gb|EEH62107.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291]
 gi|268583065|gb|EEZ47741.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11]
 gi|268587744|gb|EEZ52420.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1]
 gi|268622373|gb|EEZ54773.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332]
 gi|268624583|gb|EEZ56983.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679]
 gi|268626841|gb|EEZ59241.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610506|gb|EFF39616.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62]
          Length = 436

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 139 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 196

Query: 204 VRR 206
            R 
Sbjct: 197 FRH 199


>gi|226950983|ref|YP_002806074.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A2 str. Kyoto]
 gi|226842830|gb|ACO85496.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A2 str. Kyoto]
          Length = 468

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77
           I+V VSGG DSM LL  L  + +      I  + I+  H +R  E+  DE +YV + C  
Sbjct: 21  IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77

Query: 78  SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ ETV
Sbjct: 78  NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +N 
Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191

Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247
              + R R+R     +++D     +   + +F ++  K NN +  +      +Y T  ++
Sbjct: 192 QSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251

Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
                                 +I+ I+Q++ N++   ++ +L +S    G  ++LP   
Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNTTGKFVNLPSNM 311

Query: 286 SMERV 290
             E +
Sbjct: 312 KAENI 316


>gi|294101776|ref|YP_003553634.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM
           12261]
 gi|293616756|gb|ADE56910.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM
           12261]
          Length = 470

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 19/188 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----VRYVSDVCS 78
           +VAVSGGSDS+ LL           F   K     ++H +RE +  E    V+ +++   
Sbjct: 41  VVAVSGGSDSVALLWFF------VQFWPGKVIVAHLEHGIRERSSIEDAAFVKKLAEAWG 94

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               I H VV  +  +    L   AR  RY    + A +  AT++   HT DD  ET+  
Sbjct: 95  CEFEIEHVVVP-RLLRKGESLEEGARRVRYDFFEQIAASEGATVVALGHTADDIAETLLF 153

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R       GL G+ +     +     RP     RED+R  L  R I W EDP+N D 
Sbjct: 154 NLCRGSGP--FGLVGIPEVRGQFI-----RPLSGWWREDLRRLLQARGICWREDPTNLDT 206

Query: 198 RFERVRVR 205
            + R R+R
Sbjct: 207 TYVRNRIR 214


>gi|268594781|ref|ZP_06128948.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae 35/02]
 gi|268596895|ref|ZP_06131062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae FA19]
 gi|268548170|gb|EEZ43588.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae 35/02]
 gi|268550683|gb|EEZ45702.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae FA19]
          Length = 435

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 25  VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 81

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 82  LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 137

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 138 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 195

Query: 204 VRR 206
            R 
Sbjct: 196 FRH 198


>gi|284034335|ref|YP_003384266.1| tRNA(Ile)-lysidine synthetase [Kribbella flavida DSM 17836]
 gi|283813628|gb|ADB35467.1| tRNA(Ile)-lysidine synthetase [Kribbella flavida DSM 17836]
          Length = 349

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 89/202 (44%), Gaps = 10/202 (4%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+VR  +R L     +LVA SGG+DS+ L  A+          +++  A+ VDH L+  +
Sbjct: 32  EAVRAALRELPADTTVLVACSGGADSLALAAAIAFEAPKL---RLRAGAVIVDHGLQADS 88

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                  +D C  L +    V       + G   AAR ARY  +   A    A +++ AH
Sbjct: 89  AHAAAIAADQCRSLGLDPVEVRAVEVGSEGGPEGAARAARYDALRAAADQFGADVVLLAH 148

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R    +   L+GM       +   + RP L   R    +  +   +
Sbjct: 149 TRDDQAETVLLGLARGSGAR--SLAGMA-----PVAGLLRRPLLEVPRASTAAACIASGL 201

Query: 187 SWCEDPSNTDDRFERVRVRRFV 208
               DP N D ++ RVRVR  V
Sbjct: 202 RPWHDPHNDDPQYRRVRVRHEV 223


>gi|145300032|ref|YP_001142873.1| tRNA(Ile)-lysidine synthase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852804|gb|ABO91125.1| tRNA(Ile)-lysidine synthase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 456

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 14/200 (7%)

Query: 12  FVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           F ++L  P     +LVA SGG DS  +L+AL +  + R  G +   A+ V H L   A +
Sbjct: 9   FCQTLPEPEGSRGLLVAFSGGLDST-VLLALAAQFA-REHG-LALRALHVHHGLSPHADE 65

Query: 69  EVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            V +   VC +L +   V  V       ++ L A AR+ARY  ++  A+      ++TAH
Sbjct: 66  WVAHCEAVCQQLAVPLMVERVQLLRGNGES-LEAQARDARYQRLA--ARQEKGEWLLTAH 122

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQLET+ +  +R    +  GL+G+  +  +   L + RP L   R ++         
Sbjct: 123 HQDDQLETLLLALKRGAGLR--GLAGILPSQPFAGGL-LLRPLLEFSRAELAEVAATLPF 179

Query: 187 SWCEDPSNTDDRFERVRVRR 206
            W ED SN D  ++R  +R+
Sbjct: 180 GWVEDESNQDVSYDRNFLRQ 199


>gi|304387557|ref|ZP_07369746.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091]
 gi|304338444|gb|EFM04565.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091]
          Length = 445

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G     A+ + H L   A D   +  + C  L + 
Sbjct: 35  VALSGGLDSV---VLLHLLVRAGKKGGFIPDALHIHHGLSPRADDWADFCQNYCDMLGVG 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 92  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 148 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 205

Query: 204 VRRFV 208
            R  +
Sbjct: 206 FRHCI 210


>gi|302338330|ref|YP_003803536.1| tRNA(Ile)-lysidine synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301635515|gb|ADK80942.1| tRNA(Ile)-lysidine synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 449

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 128/295 (43%), Gaps = 41/295 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78
             +LVA SGG DS  LL A  ++LS  +       A+ +DHCLR +  + E R +    +
Sbjct: 22  GRLLVAYSGGPDSTALLAASVALLSVSA--DFTLEAVYIDHCLRSQDERREERTIIQAAT 79

Query: 79  R--------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           R        L +    +  + S   +G+ AAAR+ RY+              + AHT DD
Sbjct: 80  RRWNVPLHLLSVGEGEIVSQASASGSGVEAAARQYRYSCFENLISREKFDYCLLAHTLDD 139

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-------RPFLRCRREDIRSFLLQ 183
           Q+ET+  R              + +    D +L I        RPFL  ++ D+  +L +
Sbjct: 140 QVETILQR--------------LFEGAALDSSLGIPERRGPFFRPFLSVKKSDLLDYLRE 185

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           RN S+  D +N ++ + R R+R  +  +      A    ++ F   +   ++A+  L+P+
Sbjct: 186 RNFSFSTDSTNGENFYLRNRIRNEIIPVVASVFPAYRTAIESFLAKQRMADSALRALLPE 245

Query: 241 YLTVHMRSIIAISQDILNI----DSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
            +     S  ++S D        +     +L R+ A I   Q  LP Y  +ER++
Sbjct: 246 -IPFRKESPSSVSWDAEPFFSAPEEARRRFLYRIHAEIDSSQRRLP-YPFVERII 298


>gi|59801231|ref|YP_207943.1| hypothetical protein NGO0820 [Neisseria gonorrhoeae FA 1090]
 gi|75432494|sp|Q5F8F6|TILS_NEIG1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|59718126|gb|AAW89531.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 426

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 16  VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 73  LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 128

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 129 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 186

Query: 204 VRR 206
            R 
Sbjct: 187 FRH 189


>gi|117921240|ref|YP_870432.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. ANA-3]
 gi|117613572|gb|ABK49026.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. ANA-3]
          Length = 465

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 7/183 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS  L   L      +   +  +  I V H L   A     +     +   
Sbjct: 25  LVLAYSGGVDSEVLAYGLSEFA--KHHPEFHYQLIYVHHGLSPNADAWAEHCQTRAANYG 82

Query: 82  IAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +  +V   + +  P+  + A AR+ RY  I +H K  +  +++TAH  DDQLET+ +  +
Sbjct: 83  LPITVERVQLTLGPRVSIEAEARKMRYQAILQHLKPQD--VLLTAHHEDDQLETILLALK 140

Query: 141 RDYAEKGMGLSGMCDTI-LYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R    KG+   G    + L +    +  RP L   RE I +F   R +   ED SN DD+
Sbjct: 141 RGQGPKGLAAMGQIQMLPLGEKGACLQVRPLLDISREQIEAFAQTRQLVHIEDESNQDDK 200

Query: 199 FER 201
           ++R
Sbjct: 201 YDR 203


>gi|182420057|ref|ZP_02951291.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum 5521]
 gi|237669480|ref|ZP_04529460.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376094|gb|EDT73681.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum 5521]
 gi|237654924|gb|EEP52484.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 464

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 27/195 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80
           +LVA+SGG DS+ LL  L+++ ++ +   I+  A  ++H LR+  A ++  YV  +C  L
Sbjct: 21  VLVALSGGPDSVCLLNILYNLKAELN---IEIGAAHLNHLLRDKDAFEDEEYVKILCKSL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    ++  +   +     A R+ARY    +  K    T I TAH  +DQ ET+ 
Sbjct: 78  DIPCFVKRVDINKCSKDKKMSSEMAGRDARYNFFDDIVKDKGYTKIATAHNANDQAETIL 137

Query: 137 MRSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            R  R     G G+ G+C      D I+        RP L   R+++  ++   N+    
Sbjct: 138 FRLMR-----GSGIEGLCGIKVRRDKII--------RPILCLSRKEVEEYIEINNLKPRI 184

Query: 191 DPSNTDDRFERVRVR 205
           D +N +  + R ++R
Sbjct: 185 DKTNFEKIYNRNKIR 199


>gi|242240378|ref|YP_002988559.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech703]
 gi|242132435|gb|ACS86737.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech703]
          Length = 448

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +   +  LVA SGG DS    + LH ++  +    I+  A  V H L   A     + 
Sbjct: 17  RQIDADSRFLVAYSGGLDS---CVLLHLMMRLQQQLPIEVRAAYVHHGLNPRADAWADHC 73

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C   RI   V++      + G+ A+AREARYA +    +      ++TA   DDQ E
Sbjct: 74  RRQCQLWRIPFEVLTVHVDARRGGIEASAREARYAALRTSLQPQET--LLTAQHQDDQSE 131

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCED 191
           T  +  +R     G G +G+     +  +      RP L   RE +  +     + W ED
Sbjct: 132 TFLLALKR-----GSGPAGLASMAAFSASGAFRQRRPLLNMSREQLACYANTHQLRWIED 186

Query: 192 PSNTDDRFER 201
            SN+D+RF+R
Sbjct: 187 DSNSDERFDR 196


>gi|194098553|ref|YP_002001615.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945]
 gi|193933843|gb|ACF29667.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945]
 gi|317164226|gb|ADV07767.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 445

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 35  VALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 92  LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 147

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 148 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 205

Query: 204 VRR 206
            R 
Sbjct: 206 FRH 208


>gi|121634879|ref|YP_975124.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18]
 gi|120866585|emb|CAM10336.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18]
          Length = 445

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 35  VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    I    +  AH  DDQ+ET  +   R  
Sbjct: 92  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 147

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 148 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 205

Query: 204 VR 205
            R
Sbjct: 206 FR 207


>gi|288802304|ref|ZP_06407744.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella
           melaninogenica D18]
 gi|288335271|gb|EFC73706.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella
           melaninogenica D18]
          Length = 456

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           LVA+SGG+DS+ LL+ L  +         +  A+  +  LR  E+ +DE ++  D+C R 
Sbjct: 22  LVALSGGADSVALLLCLKEL-------GYRVEAVHCNFNLRGEESLRDE-QFCEDLCQRE 73

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    V +         +  +  AARE RY    +  + + A  +   H  +D +ET+ 
Sbjct: 74  NIPFHKVHFDTQAYADLHKVSIEMAARELRYRYFFQLKEALGANGVCVGHHKEDSVETIL 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GLSG+    +   N  + RP L   R++I  +L Q+ +S+  D +N  
Sbjct: 134 INLVR-----GTGLSGLMG--IRPRNHDVIRPLLCVTRQEIEDYLRQQAVSFVTDSTNLI 186

Query: 197 DRFERVRVR 205
           D   R ++R
Sbjct: 187 DDVVRNKIR 195


>gi|237750957|ref|ZP_04581437.1| tRNA(Ile)-lysidine synthase [Helicobacter bilis ATCC 43879]
 gi|229373402|gb|EEO23793.1| tRNA(Ile)-lysidine synthase [Helicobacter bilis ATCC 43879]
          Length = 369

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 161/373 (43%), Gaps = 50/373 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  L   L          KI+F    +D+  R  +KDEV Y   +  + + 
Sbjct: 25  LLAFSGGIDSTALFFVLME-------HKIEFDIAIIDYGKRSQSKDEVLYAKSLAKQYKK 77

Query: 83  -AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR-SQ 140
             ++++S   +K        AR  RY    +   T +   ++TAH FDD+LE  +M+ S 
Sbjct: 78  QCYTLISESITKD---FEHNARNIRYDFFHKIIITHDYHNLITAHHFDDRLEWFFMQLSC 134

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                  +G   + + ++++   ++ RPF+   +++I ++    NI +  D SN+D  ++
Sbjct: 135 GAGLNTLLGFHDITERMIHNKVYYLVRPFITYTKQEILNYNHTNNIKYFIDTSNSDISYK 194

Query: 201 RVRVRR---------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           R   R+         F+  +     YL+ ++            A L P ++ V +   + 
Sbjct: 195 RNLFRQQLSGLMNRDFINGVKKSFAYLEKER------------ARLYP-HVVVCVDYNLF 241

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
           I +  ++   T+     R+   + G Q        ++R +  LK+G   CV  G++VI +
Sbjct: 242 ICKSHIHEIHTIDMLTKRLGYIMSGKQKD-----ELQRTL--LKNG--ACVMGGKIVIAK 292

Query: 312 RANFLWITRAVRNLPTLILYPEETTV----WDGRYQFQNLSDSLIQIGPQS---YRKADV 364
             +F+++   +R L    L            + ++ +  +    I+I  Q    YR  ++
Sbjct: 293 NESFIFVGIEIRWLIKAFLEKRREKYIQLPCNIKHLYNLIQKDSIKIPKQEREKYRIQNI 352

Query: 365 PSGIPPIIAQRAL 377
           P  I P++   +L
Sbjct: 353 PPKIRPLLYINSL 365


>gi|218961145|ref|YP_001740920.1| putative tRNA(Ile)-lysidine synthase (tilS-like) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729802|emb|CAO80714.1| putative tRNA(Ile)-lysidine synthase (tilS-like) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 482

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 16/187 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           +L+  SGG+DS  +L     +   R    +    I ++H +R  E+  DE  +V  +C  
Sbjct: 26  LLLGCSGGADSNAMLYLFSRL---RVPLNLTLLVIHINHQIRGAESDADE-DFVKQLCQD 81

Query: 80  LRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           L I   V+  K   P+TG L   AR+ R+ + ++  ++ N   I+ AH  +DQ ETV + 
Sbjct: 82  LNIP--VIIRKIVVPETGNLENQARKLRFEVFNKILESYNFDKILLAHQKEDQAETVMLN 139

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G G+SGM    +  +   +  P L   R+++   L Q  ISW  D SN + +
Sbjct: 140 FLR-----GAGISGMAG--IKGITGKVVHPLLCFSRKELEEVLKQAGISWRTDSSNLETK 192

Query: 199 FERVRVR 205
           F R  +R
Sbjct: 193 FRRNLLR 199


>gi|254242336|ref|ZP_04935658.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195714|gb|EAZ59777.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 442

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L   
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R+    V+   S  Q     AAR+ARY      A      +++TA   DDQ ET+  R 
Sbjct: 83  LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+        +       + RP L   R ++ ++     + W EDPSN D RF
Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRF 192

Query: 200 ERVRVRRFV 208
            R  +RR +
Sbjct: 193 SRNYLRREI 201


>gi|116051635|ref|YP_789526.1| hypothetical protein PA14_17280 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586856|gb|ABJ12871.1| putative cell cycle protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 442

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L   
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R+    V+   S  Q     AAR+ARY      A      +++TA   DDQ ET+  R 
Sbjct: 83  LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+        +       + RP L   R ++ ++     + W EDPSN D RF
Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRF 192

Query: 200 ERVRVRRFV 208
            R  +RR +
Sbjct: 193 SRNYLRREI 201


>gi|27365224|ref|NP_760752.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus CMCP6]
 gi|61217354|sp|Q8DBE4|TILS_VIBVU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|27361371|gb|AAO10279.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus CMCP6]
          Length = 436

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 88/204 (43%), Gaps = 15/204 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL   H    +     +   A+ V H L   A   V+  +  C    
Sbjct: 22  LVVAFSGGVDSRVLLELAHRYAQEH---LLPCCAVHVHHGLSHNADQWVQSCAAWCQEKN 78

Query: 82  IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINAT-LIMTAHTFDDQLETVYMRS 139
           I  +V   +    Q   +   AR ARY  +  H   INA  L++T    DDQ+ET  +  
Sbjct: 79  IPLTVERVQLDLTQGNSIEEEARNARYQALRAH---INADDLLLTGQHADDQVETFLLAL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M   + +     I RP L  RR++I        + W ED SN D R+
Sbjct: 136 KRGSGPKG--LSSMAQQMPFSQGRLI-RPLLDVRRQEIERCAHAIGLHWVEDESNQDTRY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223
           +    R F+R   L AL  +   F
Sbjct: 193 D----RNFLRQQILPALSERWPSF 212


>gi|153825370|ref|ZP_01978037.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2]
 gi|149741054|gb|EDM55123.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2]
          Length = 440

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   IL+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY  ++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEFVQLDVASGESIEKLAREARYRALASH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|114048184|ref|YP_738734.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-7]
 gi|113889626|gb|ABI43677.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-7]
          Length = 465

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 7/183 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS  L   L      +   ++ +  I V H L   A    ++     +   
Sbjct: 25  LVLAYSGGVDSEVLAYGLSEFA--KHHPELHYQLIYVHHGLSPNADAWAKHCQTRAASYG 82

Query: 82  IAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +  +V   + +  P+  + A AR  RY  I +H K  +  +++TAH  DDQLET+ +  +
Sbjct: 83  LPITVERVQLTLGPRVSVEAEARRMRYQAILQHLKPQD--VLLTAHHEDDQLETILLALK 140

Query: 141 RDYAEKGMGLSGMCDTI-LYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R    KG+   G    + L +    + +RP L   RE I  F   R +   ED SN DD+
Sbjct: 141 RGQGPKGLAAMGQIQMLSLGEKGTCLQARPLLDISREQIEVFAQTRQLVHIEDESNQDDK 200

Query: 199 FER 201
           ++R
Sbjct: 201 YDR 203


>gi|325132247|gb|EGC54941.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M6190]
          Length = 436

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    I    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDI----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 139 GLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNR 196

Query: 204 VR 205
            R
Sbjct: 197 FR 198


>gi|229513885|ref|ZP_04403347.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21]
 gi|229349066|gb|EEO14023.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21]
          Length = 440

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   IL+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY  ++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRALAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|227499301|ref|ZP_03929413.1| tRNA(Ile)-lysidine synthase [Anaerococcus tetradius ATCC 35098]
 gi|227218652|gb|EEI83886.1| tRNA(Ile)-lysidine synthase [Anaerococcus tetradius ATCC 35098]
          Length = 456

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 14/189 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI++  SGG DS  L+  L  ++ + +F     +   ++H  R+ A  + + V     +L
Sbjct: 22  HIIIGASGGPDSQFLIYGLKDLMKEMNFT---ITLAHLNHLHRKEAILDEQLVEATAKKL 78

Query: 81  RI--AHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +       S  +   Q GL +  A R  RY    +         I  AH  DDQ ETV 
Sbjct: 79  GLDFKKKACSMDSYAKQEGLSSEDAGRRLRYEFFRQLKGDNPKAKIAVAHNLDDQAETVL 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G G+ G+   + Y  N  I RP L  R+ +I ++L + NI++  D +N +
Sbjct: 139 MRIIR-----GTGIEGLR-AMDYK-NDDIIRPILDIRKSEILAYLNENNIAYAIDKTNLE 191

Query: 197 DRFERVRVR 205
             + R ++R
Sbjct: 192 TDYTRNKIR 200


>gi|294635147|ref|ZP_06713656.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda ATCC 23685]
 gi|291091452|gb|EFE24013.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda ATCC 23685]
          Length = 439

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 14/185 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR- 79
           H+LVA SGG DS  LL AL  + + R   +++   + V H L   A   V +   VC   
Sbjct: 19  HLLVAFSGGLDSTVLLHALVQLRATR-LPQLRLRVVHVHHGLSAFADQWVEHCESVCHHW 77

Query: 80  ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
              L + H  V  + +  +     A   A  ALI  H        ++TA   DDQ ET  
Sbjct: 78  QVPLHVLHVQVDTQRNSVEAAARDARYRAIAALIGSHET------LLTAQHLDDQCETFL 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R       GLS M +++ +       RP L   R  + S+    +++W ED SN D
Sbjct: 132 LALKR--GSGPTGLSAMAESMPF-FATEQRRPLLGLSRRQLLSYAQAHHLTWVEDDSNAD 188

Query: 197 DRFER 201
            RF+R
Sbjct: 189 ARFDR 193


>gi|15616731|ref|NP_239943.1| cell cycle protein MesJ [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386907|sp|P57211|TILS_BUCAI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|25325269|pir||E84942 cell cycle protein mesJ [imported] - Buchnera sp. (strain APS)
 gi|10038794|dbj|BAB12829.1| cell cycle protein mesJ [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 440

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 8/186 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS    + L+ +L  +    IK  AI ++H L   +K    +   +C+   I
Sbjct: 15  LVAYSGGLDST---VLLYKLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V +         L    R  RY +I  H    +  +++T H  +DQ ET ++  +R 
Sbjct: 72  PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKR- 128

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLS M    L+     I RPFL+  + +++++  ++ + W ED SN +  ++R 
Sbjct: 129 -GSGPTGLSSMSFETLFGTKK-IVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186

Query: 203 RVRRFV 208
            +R  V
Sbjct: 187 FIRNEV 192


>gi|15598834|ref|NP_252328.1| hypothetical protein PA3638 [Pseudomonas aeruginosa PAO1]
 gi|61216741|sp|Q9HXZ3|TILS_PSEAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|9949797|gb|AAG07026.1|AE004783_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 442

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L   
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R+    V+   S  Q     AAR+ARY      A      +++TA   DDQ ET+  R 
Sbjct: 83  LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+        +       + RP L   R ++ ++     + W EDPSN D RF
Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRF 192

Query: 200 ERVRVRRFV 208
            R  +RR +
Sbjct: 193 SRNYLRREI 201


>gi|194333384|ref|YP_002015244.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris aestuarii DSM 271]
 gi|194311202|gb|ACF45597.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 336

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 135/331 (40%), Gaps = 64/331 (19%)

Query: 3   LSPIESV---RFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           L+PIE     +   R LV   + +L AVSGG DSM L+  L S      F      ++ +
Sbjct: 5   LTPIEKAFVEQLTTRKLVEKGSSVLAAVSGGPDSMALMHLLQSARPVLHF------SLEI 58

Query: 59  DHCL-----RETAKDEVRYVSDVCSRL----RIAH-----SVVSWKNSKPQTGLMAAARE 104
            HC      RE+  DE   V++  +RL     I H        SWK S  +T     AR 
Sbjct: 59  AHCHFGLRDRESDLDES-LVAEEAARLGLRCHIRHFDTRRDAGSWKKSIEET-----ARI 112

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNL 163
            RY   SE  +T     + T H  +D  ET+     R  +  G+ G+     T++     
Sbjct: 113 ERYGFFSELQRTCGFDRVATGHHVNDNAETILFNLFRGTSVPGLKGIRAHHGTLI----- 167

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSN----TDDRFERVRVRRFVRDIDLHALYLK 219
              RP L  RRED+ S++  +NI++  D SN     D  F R RV   + +   H L   
Sbjct: 168 ---RPMLLMRREDVMSYIDAKNIAYRTDASNFGIEPDRNFIRHRVIPVIEERFQHKLLPS 224

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
           +++  +         A  + ++L +H   +   +  +   D       LRVS        
Sbjct: 225 LRRISE--------QAGELEEFLELHFEKLQQENDGLRLCDDC-----LRVS-------- 263

Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
            L    + ER  LF ++ +  C+     VID
Sbjct: 264 DLARLTTFERKELFKRALQELCIEPSSKVID 294


>gi|219681486|ref|YP_002467871.1| cell cycle protein MesJ [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682042|ref|YP_002468426.1| cell cycle protein MesJ [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471165|ref|ZP_05635164.1| cell cycle protein MesJ [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621775|gb|ACL29931.1| cell cycle protein MesJ [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624329|gb|ACL30484.1| cell cycle protein MesJ [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311085853|gb|ADP65935.1| cell cycle protein MesJ [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086423|gb|ADP66504.1| cell cycle protein MesJ [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 440

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 8/186 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS    + L+ +L  +    IK  AI ++H L   +K    +   +C+   I
Sbjct: 15  LVAYSGGLDST---VLLYKLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V +         L    R  RY +I  H    +  +++T H  +DQ ET ++  +R 
Sbjct: 72  PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKR- 128

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLS M    L+     I RPFL+  + +++++  ++ + W ED SN +  ++R 
Sbjct: 129 -GSGPTGLSSMSFETLFGTKK-IVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186

Query: 203 RVRRFV 208
            +R  V
Sbjct: 187 FIRNEV 192


>gi|218259686|ref|ZP_03475329.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224957|gb|EEC97607.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii
           DSM 18315]
          Length = 444

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           +LV VSGG+DS+ LL    ++L +  +      + +V HC   LR  E+ +DE ++V + 
Sbjct: 21  VLVGVSGGADSIALL----TILVESGY------SCTVAHCNFHLRGDESLRDE-QFVREY 69

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +L +   +  +   K     +  +  AARE RY    E      A  I  AH  DD +
Sbjct: 70  ARKLDVPFLMTDFDTRKYAASRRLSIEMAARELRYDWFEEQRVATGAQAIAVAHHRDDSV 129

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ M   R     G G+ G+    +   N ++ RP L   REDI  +L +R + +  D 
Sbjct: 130 ETLLMNLVR-----GTGIRGLSG--IRPKNGFVVRPLLAVSREDILEWLARRGLRYVTDS 182

Query: 193 SNTDDRFERVRVR 205
           +N  D + R  +R
Sbjct: 183 TNLSDAYTRNFIR 195


>gi|183179458|ref|ZP_02957669.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-3]
 gi|183012869|gb|EDT88169.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-3]
          Length = 440

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   +L+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY  ++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRALAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|327480171|gb|AEA83481.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 82/185 (44%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL AL + LS+R    +   AI V H L+        +   VC +L + 
Sbjct: 34  VAFSGGLDSTVLLHAL-TRLSERQALPV-IRAIHVHHGLQAAGDHWPAHCQRVCDQLGVT 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V      P   L  AAR+ARY   S  A      L++T    DDQ ET+  R  R  
Sbjct: 92  LEIVR-VRVVPGASLERAARDARYQAFS--ACVGEGELLLTGQHRDDQAETLLFRLLRGA 148

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D         + RP L   R ++  +     ++W EDPSN    + R  
Sbjct: 149 GVRG--LAAMPDVRSMGRGS-LVRPLLEVSRAELEDYARANGLAWVEDPSNQQLEYSRNF 205

Query: 204 VRRFV 208
           +RR V
Sbjct: 206 LRRQV 210


>gi|320155609|ref|YP_004187988.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus MO6-24/O]
 gi|319930921|gb|ADV85785.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus MO6-24/O]
          Length = 436

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 88/204 (43%), Gaps = 15/204 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL   H    +     +   A+ V H L   A   V+  +  C    
Sbjct: 22  LVVAFSGGVDSRVLLELAHRYAQEH---LLPCCAVHVHHGLSHNADQWVQSCAAWCQEKN 78

Query: 82  IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINAT-LIMTAHTFDDQLETVYMRS 139
           I  +V   +    Q   +   AR ARY  +  H   INA  L++T    DDQ+ET  +  
Sbjct: 79  IPLTVERVQLDLTQGNSIEEEARNARYQALRAH---INADDLLLTGQHADDQVETFLLAL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M   + +     I RP L  RR++I        + W ED SN D R+
Sbjct: 136 KRGSGPKG--LSSMAQQMPFSQGRLI-RPLLDVRRQEIERCAHAIGLHWVEDESNQDTRY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKF 223
           +    R F+R   L AL  +   F
Sbjct: 193 D----RNFLRQQILPALSERWPSF 212


>gi|296387857|ref|ZP_06877332.1| putative cell cycle protein [Pseudomonas aeruginosa PAb1]
          Length = 442

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L   
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R+    V+   S  Q     AAR+ARY      A      +++TA   DDQ ET+  R 
Sbjct: 83  LRVERVQVAVGGSIEQ-----AARDARYRAF--QASLGEGQVLLTAQHLDDQAETLLFRL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+        +       + RP L   R ++ ++     + W EDPSN D RF
Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRF 192

Query: 200 ERVRVRRFV 208
            R  +RR +
Sbjct: 193 SRNYLRREI 201


>gi|258645728|ref|ZP_05733197.1| putative tRNA(Ile)-lysidine synthase [Dialister invisus DSM 15470]
 gi|260403097|gb|EEW96644.1| putative tRNA(Ile)-lysidine synthase [Dialister invisus DSM 15470]
          Length = 473

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 84/187 (44%), Gaps = 13/187 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL AVSGG DS+ LL+AL  +       KI      V+H LR  A  E  +V  VC    
Sbjct: 27  ILAAVSGGPDSLALLLALKLLAVKE---KINIGCCCVNHHLRAAAGKEAEFVESVCREWN 83

Query: 82  IA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           I      V      +    +  AAR+ RY  + E A+      I  AH  DDQ ETV   
Sbjct: 84  IPFILKEVDVQSAVRNGGSIETAARDFRYKALREAARGGRYAKIAVAHHGDDQAETVLYH 143

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G G++G+  + +  +N  I RPFL   + +I+ FL   +   C D SN  + 
Sbjct: 144 LLR-----GSGVTGL--SGMKPINGDIIRPFLCVSKNEIKDFLKDFSYVPCHDESNDVED 196

Query: 199 FERVRVR 205
             R R+R
Sbjct: 197 AVRNRIR 203


>gi|239500682|ref|ZP_04659992.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB900]
          Length = 418

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L++ + +    V+   + L I + +   K       L A AR+ARY    
Sbjct: 8   KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 65

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169
           +H +     +++ AH   DQ ETV +R        G G+ G+     I Y  ++ I RPF
Sbjct: 66  QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 118

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           L   RE I  + +Q  + + +DP N D  ++RV  R 
Sbjct: 119 LDLTREQIALWAVQLEVKYIDDPMNYDTHYDRVWCRE 155


>gi|20808759|ref|NP_623930.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|61217386|sp|Q8R7K9|TILS_THETN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|20517403|gb|AAM25534.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
          Length = 467

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++ +SGG DS+ +L  L ++   +    +K   + V+H +R E AK +  +V  +C  L
Sbjct: 30  IVMGISGGPDSLCMLDVLFNL---KGKFNLKLYVVHVNHMIRGEDAKKDAEFVEKLCKDL 86

Query: 81  RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +        + +   K       A R  RY    E  K +    I  AH  +D  ETV 
Sbjct: 87  DLPFFLFEENIPYLAKKMGLSEEQAGRYVRYKAFEETLKRVGGNKIAVAHNKNDVAETVL 146

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GL G+    +  +N  I RP +   R +I  +L  +N+    D +N +
Sbjct: 147 LNILR-----GTGLRGLIG--IKPVNGNIIRPLIEIERREIEKYLKDKNLHPRIDHTNYE 199

Query: 197 DRFERVRVR 205
           D + R ++R
Sbjct: 200 DLYTRNKIR 208


>gi|307266280|ref|ZP_07547821.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918730|gb|EFN48963.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 458

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++ VSGG DS+ +L  L+++   +    +K   + V+H +R E AK + ++V D+C +L
Sbjct: 21  IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEAKRDAQFVEDMCRKL 77

Query: 81  RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           ++   +   K+ K     M      A R  RY    E  + +    I  AH  +D +ETV
Sbjct: 78  KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLREVKGNKIAVAHNKNDVVETV 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++   R     G G++G+    +  +N  I RP +   RE+I +++ ++++    D +N 
Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIENYIKEKDLKPVIDFTNY 189

Query: 196 DDRFERVRVR 205
           +D ++R +VR
Sbjct: 190 EDLYKRNKVR 199


>gi|229522189|ref|ZP_04411606.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TM 11079-80]
 gi|229341114|gb|EEO06119.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TM 11079-80]
          Length = 440

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   +L+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLSRYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|121726536|ref|ZP_01679785.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V52]
 gi|121630989|gb|EAX63368.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V52]
          Length = 440

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   +L+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKLLLALSGGVDSQ-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ+ET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQMETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|310287911|ref|YP_003939169.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum S17]
 gi|309251847|gb|ADO53595.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum S17]
          Length = 372

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 9/177 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L      V +  S+G I+  A+ VDH L+E + +  +  +  C  L 
Sbjct: 45  VLVACSGGRDSMALAAVAGIVCA--SWG-IRCGAVVVDHRLQEHSDEVAQSAARRCCGLG 101

Query: 82  IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +VV  + S     + AAAR+ARY  +++ A+  +A  ++ AHT DDQ ETV M   
Sbjct: 102 LDPVTVVPVEVSGDGHSVEAAARDARYRALADTARRESAACVLLAHTGDDQAETVLMDVL 161

Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R     G+  L+GM   +  D  +  +RPFLR  R D         I+W +DP+N D
Sbjct: 162 R---SSGLDSLAGMPRIVERD-GVRFARPFLRLTRADTTGICEDLGITWWDDPTNGD 214


>gi|311087006|gb|ADP67086.1| cell cycle protein MesJ [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 440

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 8/186 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS    + L+ +L  +    IK  AI ++H L   +K    +   +C+   I
Sbjct: 15  LVAYSGGLDST---VLLYKLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V +         L    R  RY +I  H    +  +++T H  +DQ ET ++  +R 
Sbjct: 72  PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKR- 128

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLS M    L+     I RPFL+  + +++++  ++ + W ED SN +  ++R 
Sbjct: 129 -GSGPTGLSSMSFETLFGTKK-IVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186

Query: 203 RVRRFV 208
            +R  V
Sbjct: 187 FIRNEV 192


>gi|260495550|ref|ZP_05815675.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_33]
 gi|260196892|gb|EEW94414.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_33]
          Length = 448

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 19/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE---VRYVSDV 76
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR  +   DE     Y    
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---QNFINFKIYLVHINHLLRGKDAVSDENFSFEYAKK- 78

Query: 77  CSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            + L I    +  K    + G  L    RE RY   SE  K + A  I TAH  DDQ+ET
Sbjct: 79  -NNLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYKKVGANKIATAHNKDDQIET 137

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
              R  R     G  L G+    + + N  I RP     ++DI  +L +  I +  D +N
Sbjct: 138 FLFRLIR-----GASLQGLEGIKIKNNN--IIRPISEIYKKDILDYLNKNEIQYKIDKTN 190

Query: 195 TDDRFERVRVR 205
            ++ F R  +R
Sbjct: 191 FENEFTRNSIR 201


>gi|198273466|ref|ZP_03206002.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|198249986|gb|EDY74766.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 326

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 22/202 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L AVSGG DSM +L      +S             V++  RE+A  +   V D C +  +
Sbjct: 18  LAAVSGGPDSMAMLNMYKRNIS---------VVCHVNYHKRESADRDQEIVVDFCKKNNL 68

Query: 83  AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++      ++         A AR  RY    E  K  N   +  AH FDD LET YM
Sbjct: 69  PIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDFLETAYM 128

Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +  R       G+  S + + ++      + RP L   ++ ++ +  +  I +  D +N 
Sbjct: 129 QRARQSKALFYGIKESNVVNGMI------VKRPVLFICKQTLQRYCDENKIKYGIDETNE 182

Query: 196 DDRFERVRVRRFVRDIDLHALY 217
            D +ER RVR+ + +  L+ +Y
Sbjct: 183 LDIYERNRVRKTISNWSLNEVY 204


>gi|291616365|ref|YP_003519107.1| TilS [Pantoea ananatis LMG 20103]
 gi|291151395|gb|ADD75979.1| TilS [Pantoea ananatis LMG 20103]
          Length = 435

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 7/185 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL  L +    R   +++  A+ V H L   A     +   +C R +
Sbjct: 14  LVVAFSGGLDSTVLLHQLRAWQQARPQSRLR--ALHVHHGLSPNADSWAAHCLCLCERWQ 71

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V+  + +    G+ AAAR+ RY  + + A   +  L +TA   DDQ ET+ +  +R
Sbjct: 72  IPCEVLRVQVTDQGQGIEAAARQVRYQALGQ-ALCADEKL-LTAQHLDDQCETLLLALKR 129

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+       T      L   RP L   R  +  +     + W ED SN D R++R
Sbjct: 130 GSGPAGLAAMPAATTFAGHALL---RPLLNHSRLSLEQYAEAHQLVWVEDESNQDQRYDR 186

Query: 202 VRVRR 206
             +R+
Sbjct: 187 NFLRQ 191


>gi|308233644|ref|ZP_07664381.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae DSM 15829]
 gi|328944407|ref|ZP_08241869.1| PP-loop family protein [Atopobium vaginae DSM 15829]
 gi|327490991|gb|EGF22768.1| PP-loop family protein [Atopobium vaginae DSM 15829]
          Length = 509

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 33/214 (15%)

Query: 20  AHILVAVSGGSDSMGL-LIALHSVLSDRS------FGKIKFSAISVDHCLR-ETAKDEVR 71
           A +L+ VSGG+DS  L L+A  S L            K +   + V+H LR  +A+ +  
Sbjct: 24  APVLLMVSGGADSSALTLLAATSQLDLEDGRGCAPIAKERLHILHVNHGLRGASAQADEE 83

Query: 72  YVSDVCSRL----RIAH----SVVSWKNSKPQTGLMAAAREARYALISE---------HA 114
           +V ++ S       +AH     + + K    +  +    R  RY +  E         H 
Sbjct: 84  FVLELASHFGIVFHVAHVDVARLAAQKTLSGEKNIENVGRMVRYKVAFELIKKLCQQTHT 143

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +A  I+TAHT  D++ET ++      A KG  LSG+C   +      I RP L    
Sbjct: 144 RVQDAR-ILTAHTASDRVETFFLN-----ATKGSALSGLCS--IPRRRSIIVRPLLDTTH 195

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           E++   L Q  ++WCED +N D  + R  +R  +
Sbjct: 196 EELCDMLTQHGMTWCEDQTNHDTHYARAYMRHVI 229


>gi|19705273|ref|NP_602768.1| cell cycle protein MesJ [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|61216676|sp|Q8RHN5|TILS_FUSNN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|19713236|gb|AAL94067.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 448

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   + F   K   + ++H LR E A  +  +  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---QYFFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    + G  L    RE RY   SE  + + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYEKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G  L G+    + + N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIR-----GTSLQGLEGIKIKNNN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|123430775|ref|XP_001307953.1| PP-loop family protein [Trichomonas vaginalis G3]
 gi|121889608|gb|EAX95023.1| PP-loop family protein [Trichomonas vaginalis G3]
          Length = 444

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 17/186 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR--LR 81
           + VSGG+DSM L      +  D +   I      ++H +RETAK +  +V   C    ++
Sbjct: 23  LGVSGGADSMYLFYNFMDLKEDWNLDII---VCHLNHGIRETAKRDEEFVKKSCQAYGIK 79

Query: 82  IAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
                V+      +    +  A R  RY    E+++      I+TAH  +D++ETV    
Sbjct: 80  FISKTVNMDEFAREKKFSSEEAGRILRYEFFRENSQ---GRKILTAHNANDRVETVLFNI 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G GL G+    +  +N  I RP +  +RE+I  +L +  + + +D +N ++ +
Sbjct: 137 MR-----GTGLKGLSG--ITHVNGDIYRPLINIKREEIEDYLHKNKLQYFDDETNFEEIY 189

Query: 200 ERVRVR 205
            R ++R
Sbjct: 190 TRNKIR 195


>gi|147921431|ref|YP_684755.1| ATPase [uncultured methanogenic archaeon RC-I]
 gi|110620151|emb|CAJ35429.1| predicted ATPase (PP-loop superfamily) [uncultured methanogenic
           archaeon RC-I]
          Length = 308

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 13/128 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI VA+SGG DS   L  L    + RS   IKFSAI+VD  +     + + Y  ++C RL
Sbjct: 49  HIAVAMSGGKDSAVTLSILVDTFTTRS--NIKFSAITVDEGIEGYRNESIPYAKELCDRL 106

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYA-----------LISEHAKTINATLIMTAHTFD 129
            + H VVS+K     T     +RE + A           L++  A+ I A  + T H  D
Sbjct: 107 GVPHYVVSFKEEIGHTLDDILSRERKEASCTYCGVFRRTLLNRKAREIGANKLATGHNLD 166

Query: 130 DQLETVYM 137
           D+ + V +
Sbjct: 167 DEAQVVLL 174


>gi|260587360|ref|ZP_05853273.1| tRNA(Ile)-lysidine synthase [Blautia hansenii DSM 20583]
 gi|260542227|gb|EEX22796.1| tRNA(Ile)-lysidine synthase [Blautia hansenii DSM 20583]
          Length = 451

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 25/199 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77
           +H++V +SGG+DS+ LL  L      + F   +  A+ V+H +R  E  +DE  +   VC
Sbjct: 21  SHVIVGLSGGADSVCLLKLLKEYKKQQEF---QLYAVHVNHHIRGEEAVRDE-EFSKAVC 76

Query: 78  SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT---LIMTAHTFDD 130
            +L +  +V  +       + +  L  A R  R     +  K I  +   +I  AH  +D
Sbjct: 77  KKLEVPFTVFHYDVPQIAKEEKLSLEEAGRNVRREAFEKVMKNIKVSGRKMIALAHHEND 136

Query: 131 QLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             ETV     R     G+G    +SG  D+ +        RP L  +R +I  +L  + I
Sbjct: 137 NAETVLHNLMRGSGAAGLGGIRPVSGEKDSYI--------RPLLFVKRAEIEKYLKGQGI 188

Query: 187 SWCEDPSNTDDRFERVRVR 205
           SW  D +N +  + R ++R
Sbjct: 189 SWVTDSTNEETEYTRNKIR 207


>gi|113970960|ref|YP_734753.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-4]
 gi|113885644|gb|ABI39696.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-4]
          Length = 465

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 7/183 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS  L   L      +   ++ +  I V H L   A    ++     +   
Sbjct: 25  LVLAYSGGVDSEVLAYGLSEFA--KHHPELHYQLIYVHHGLSPNADAWAKHCQTRAASYG 82

Query: 82  IAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +  +V   + +  P+  + A AR  RY  I +H K  +  +++TAH  DDQLET+ +  +
Sbjct: 83  LPITVERVQLTLGPRVSVEAEARRMRYQAILQHLKPQD--VLLTAHHEDDQLETILLALK 140

Query: 141 RDYAEKGMGLSGMCDTI-LYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R    KG+   G    + L +    + +RP L   RE I  F   R +   ED SN DD+
Sbjct: 141 RGQGPKGLAAMGQIQMLSLGEKGTCLQARPLLDISREQIEVFAQTRQLVHIEDESNQDDK 200

Query: 199 FER 201
           ++R
Sbjct: 201 YDR 203


>gi|297159327|gb|ADI09039.1| tRNA(Ile)-lysidine synthase [Streptomyces bingchenggensis BCW-1]
          Length = 375

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 21/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G ++   ++VDH L++ +  EVR  ++V  RLR
Sbjct: 38  VLVACSGGADSMALASAL--AFEAPKLG-VRAGGVTVDHGLQDGS--EVR-AAEVAERLR 91

Query: 82  IAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +          V   ++  P+     A     YA +   A+   A  ++  HT DDQ ET
Sbjct: 92  LLGLEPVECIGVSVGRDGGPEAAARDAR----YAALDTAAERHGAVAVLLGHTRDDQAET 147

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   LSGM    +        RPFLR  R+ +R   L +++   +DP N
Sbjct: 148 VLLGLARGSGIR--SLSGMAQ--VSGAGGRYRRPFLRLDRQTVRRACLAQSLPVWDDPHN 203

Query: 195 TDDRFERVRVR 205
            D  + R RVR
Sbjct: 204 VDPAYTRSRVR 214


>gi|296328516|ref|ZP_06871035.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154325|gb|EFG95124.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 448

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +   + F   K   + ++H LR E A  +  +  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---QYFFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    + G  L    RE RY   SE  + + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYEKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G  L G+    + + N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIR-----GTSLQGLEGIKIKNNN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|254286449|ref|ZP_04961406.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae AM-19226]
 gi|150423398|gb|EDN15342.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae AM-19226]
          Length = 440

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 13/201 (6%)

Query: 12  FVRSLV-YP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L  YP   +L+A+SGG DS  LL  L     +  +     +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKLLLALSGGVDSQVLLALLARGRDELGW---DVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHT 127
            ++    C  + +A  +   + +      +   AREARY +++ H   +NA TL++    
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+              L   RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D SN D R+ER  +R  V
Sbjct: 179 WVIDESNADIRYERNFLRHQV 199


>gi|255013262|ref|ZP_05285388.1| putative cell-cycle protein [Bacteroides sp. 2_1_7]
          Length = 438

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 152/362 (41%), Gaps = 74/362 (20%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           I ++R ++   R L     +LV +SGG+DS+ LL  L          ++ +  I++ HC 
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51

Query: 62  --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             LR  E+ +DE  +  +    L     +I    +S+   K    +  AARE RYA   E
Sbjct: 52  FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGEK-HLSIEMAARELRYAWFEE 109

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             + +       AH  DD +ETV M   R     G G+ GM    +   N +I RP L  
Sbjct: 110 MRERLGGQATAVAHHRDDNVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162

Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            REDI ++L  +  ++  D +N  D     F R+ V   + +I+  A     +  + L  
Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273
               + A  I  Y+    R  + +S D L+I +        T+L+ LL+       VS  
Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276

Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332
           I       PG        LF  S         R++ DR  ++LWIT   +    T +L P
Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITSLEKKEKRTFVLDP 320

Query: 333 EE 334
           E+
Sbjct: 321 EK 322


>gi|239980354|ref|ZP_04702878.1| cell cycle protein [Streptomyces albus J1074]
 gi|291452216|ref|ZP_06591606.1| hypoxanthine phosphoribosyltransferase [Streptomyces albus J1074]
 gi|291355165|gb|EFE82067.1| hypoxanthine phosphoribosyltransferase [Streptomyces albus J1074]
          Length = 412

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 96/204 (47%), Gaps = 31/204 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           +LVA SGG+DSM L  AL         G I+   I+VDH L+  +       +DV +RL 
Sbjct: 97  VLVACSGGADSMALASAL--AFEAPRLG-IRAGGITVDHGLQYGSDAR---AADVVARLT 150

Query: 81  -------------------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
                              R AH    +     + G  AAAR+ARYA + E A+ + A  
Sbjct: 151 ALGLDPVESAAVRVAAASDRTAHG-APYAGGARRVGPEAAARDARYAALDEAAERLGAAA 209

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R    +   LSGM   +  D   +  RPFL+  R+  R+  
Sbjct: 210 VLLGHTRDDQAETVLLGLARGSGIR--SLSGMA-AVSGDSGRY-RRPFLQLDRQTARTAC 265

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
           L +++   +DP NTD  + R R+R
Sbjct: 266 LAQSLPVWDDPHNTDPAYTRSRLR 289


>gi|326391164|ref|ZP_08212709.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992797|gb|EGD51244.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus JW
           200]
          Length = 458

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++ VSGG DS+ +L  L+++   +    +K   + V+H +R E AK + ++V D+C +L
Sbjct: 21  IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEAKRDAQFVEDMCRKL 77

Query: 81  RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           ++   +   K+ K     M      A R  RY    E  + +    I  AH  +D +ETV
Sbjct: 78  KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLREVKGNKIAVAHNKNDVVETV 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++   R     G G++G+    +  +N  I RP +   RE+I +++ ++++    D +N 
Sbjct: 137 FLNLIR-----GSGMAGLIG--IKPVNGNIIRPLIEIEREEIENYIKEKDLKPIIDFTNY 189

Query: 196 DDRFERVRVR 205
           +D ++R +VR
Sbjct: 190 EDLYKRNKVR 199


>gi|254225768|ref|ZP_04919373.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51]
 gi|125621674|gb|EAZ50003.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51]
          Length = 440

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A    ++    C  + 
Sbjct: 20  ILLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQWAQHCQRCCREVG 76

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRS 139
           +A  +   + +      +   AREARY +++ H   +NA TL++     DDQLET  +  
Sbjct: 77  MACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQHADDQLETFLLAL 133

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG+              L   RP L   R+ I ++  Q  ++W  D SN D R+
Sbjct: 134 KRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLTWVIDESNADIRY 190

Query: 200 ERVRVRRFV 208
           ER  +R  V
Sbjct: 191 ERNFLRHQV 199


>gi|326336198|ref|ZP_08202370.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691707|gb|EGD33674.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 439

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 23/212 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
            ++   I++A+SGG DS+ L   L  +       +I F     +  LR E ++ +  +V 
Sbjct: 15  FLWQKRIILAISGGIDSVVLAYLLKEL-------QIPFLMAHCNFQLRGEESEGDQHFVE 67

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +  +L +   V  +   +           AAR  RY    +  +      I+TAH  +D
Sbjct: 68  ALAQKLSMPLEVKRFATKEYGKTHALNTQLAARVLRYEWFEQIRQKKGYDYILTAHQAND 127

Query: 131 QLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
             ET  + + R    KG+ G+    +TIL        RP L   RE+I +F  + NI W 
Sbjct: 128 SWETFLINTSRGTGLKGLLGVPVQNNTIL--------RPLLGFSREEILAFAKENNIIWR 179

Query: 190 EDPSNTDDRFERVRVRRFVRDI--DLHALYLK 219
           ED SN  D + R ++R  +  I   +H  +LK
Sbjct: 180 EDSSNNSDAYTRNKIRHHISPILSQIHPNFLK 211


>gi|167518720|ref|XP_001743700.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777662|gb|EDQ91278.1| predicted protein [Monosiga brevicollis MX1]
          Length = 475

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 148/376 (39%), Gaps = 72/376 (19%)

Query: 22  ILVAVSGGSD---------------------------SMGLLIALHSVLSDRSFGKIKFS 54
           +LVAVSGG D                           SM L+ ALH     +  G+++  
Sbjct: 24  LLVAVSGGPDRCEWDDATSMATCAMCWLIGHAPACICSMALVHALH----QQQPGRVR-- 77

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQTGLMAAAREARYALISE 112
           A  VDH LR  + DE   V     R  I    S + W  + P++   A AR  RY  +  
Sbjct: 78  AHLVDHRLRPESTDEAHQVMSELQRHSIVCGMSTLQWA-AAPRSNTQALARTERYNALVA 136

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDL 161
            A       I+TAH  DDQ+ET+ MR           LSG+   +            + L
Sbjct: 137 AAHQHGCQAILTAHHADDQVETILMRI--------CNLSGLVGALGIRARAHWRSERHGL 188

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-----RFVRDID-LHA 215
              ++RP L   + D+  +    ++    D SN  D++ER R+R     R  +  D L  
Sbjct: 189 QAPLARPLLHLTKADLVQYCQTNDVRTVNDCSNDSDKYERNRLRFALAARQQQTPDTLGE 248

Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA--- 272
           +Y   + +  LR+++      L    L   +   I   +  L   +     ++ ++A   
Sbjct: 249 MYALAENWTVLRLELEGEARELAQSALHHDVHPQIWSIESKLVARAPRAVQIVLITACLV 308

Query: 273 AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN----FLWITRAVRNL-PT 327
           A+ GG+   P  R +E ++  L+  +     +G V  +R+ +     LW +    +  P 
Sbjct: 309 AVSGGR--QPDPRQVEALVSTLEQSQPVRGQVGVVSFERQGSNHALHLWRSPLRADFEPL 366

Query: 328 LILYPEETT-VWDGRY 342
            I  P      WDGR+
Sbjct: 367 TIQSPTPAAWYWDGRF 382


>gi|282875439|ref|ZP_06284311.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis SK135]
 gi|281295796|gb|EFA88318.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis SK135]
          Length = 166

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 16/128 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            AHI+VAVS G DSM LL   +S+L+D      K + + V+H LRE + +E  ++ + C 
Sbjct: 11  KAHIVVAVSTGIDSMSLL---YSLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYCH 67

Query: 79  RLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +  I           +V+  NS  Q      AR+ RY    +    + A +++TAH  DD
Sbjct: 68  QHHIDIYIKRLDLSDIVADGNSIQQ-----EARQRRYEWFGDIIAQLRADVLLTAHHLDD 122

Query: 131 QLETVYMR 138
           QLET+  R
Sbjct: 123 QLETIIYR 130


>gi|225561815|gb|EEH10095.1| PP-loop family protein [Ajellomyces capsulatus G186AR]
          Length = 688

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG+DSM L      ++S+R    ++     VDH  RE + DE + V+    
Sbjct: 39  PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFIVDHLAREGSTDEAQKVAGWLR 98

Query: 79  RLRIAHSVVS--WKNSKPQTGLM---AAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+++  W +    + L      AR+ RY ++ +  K  N   +   H  DD +E
Sbjct: 99  ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMC 154
           TV  R  R    +  GL G+ 
Sbjct: 159 TVLSRLTRG-QRQATGLKGVA 178


>gi|171920332|ref|ZP_02931673.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902755|gb|EDT49044.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 330

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L AVSGG DSM +L      +              V++  RE++  + + V D C +  +
Sbjct: 18  LAAVSGGPDSMAMLNMYKRNIR---------VVCHVNYHKRESSDRDQQIVVDFCKKNNL 68

Query: 83  AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++      ++           AR  RY    E  K  N   +  AH FDD LET YM
Sbjct: 69  IIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDFLETAYM 128

Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +  R       G+  S + + I+      + RP L  R++ ++ +  +  I +  D +N 
Sbjct: 129 QRARQSKALFYGIKESNVINGII------VKRPVLFVRKQTLQRYCDENKIKYGIDETNE 182

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF 223
            D +ER RVR+ +    L+ +Y   KKF
Sbjct: 183 LDIYERNRVRKIISSWSLNEVY-DFKKF 209


>gi|84389775|ref|ZP_00991327.1| Cell cycle protein MesJ [Vibrio splendidus 12B01]
 gi|84376876|gb|EAP93750.1| Cell cycle protein MesJ [Vibrio splendidus 12B01]
          Length = 444

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 11/197 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +S + P  ++VA SGG DS  +L+ L +  + ++ G I+  A+ V H L + A       
Sbjct: 14  QSALKPNRLIVAFSGGVDSR-VLLELAAQYA-QTHG-IECCAVHVHHGLSKNADHWAEQC 70

Query: 74  SDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              C  L ++ +V  VS      ++ +   AR+ARY    +H       +++T    DDQ
Sbjct: 71  QTWCDALSVSLAVERVSLDIDSGES-VEKLARDARYNAFQKHLSF--GDVLITGQHIDDQ 127

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET  +  +R    KG  LS M   + +  N  I RP L   R DI        ++W ED
Sbjct: 128 LETFLLALKRGSGPKG--LSSMAKMMPF-ANAHIVRPLLSVTRTDIEGAARDMALTWVED 184

Query: 192 PSNTDDRFERVRVRRFV 208
            SN D RF+R  +R  V
Sbjct: 185 ESNQDLRFDRNFIRHQV 201


>gi|297545407|ref|YP_003677709.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843182|gb|ADH61698.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 464

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++ VSGG DS+ +L  L+++   +    +K   + V+H +R E A+ + ++V ++C +L
Sbjct: 21  IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEARRDAQFVENICCKL 77

Query: 81  RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           ++   +   K+ K     M      A R  RY    E  K +    I  AH  +D +ETV
Sbjct: 78  KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++   R     G G++G+    +  +N  I RP +   R++I  +L ++ +    D +N 
Sbjct: 137 FLNLIR-----GAGMTGLIG--IKPVNGNIIRPLIEIERKEIEIYLKEKGLKPALDFTNY 189

Query: 196 DDRFERVRVR 205
           +D ++R +VR
Sbjct: 190 EDLYKRNKVR 199


>gi|55820113|ref|YP_138555.1| cell-cycle protein MesJ/Ycf62 family [Streptococcus thermophilus
           LMG 18311]
 gi|55822003|ref|YP_140444.1| cell-cycle protein MesJ/Ycf62 family [Streptococcus thermophilus
           CNRZ1066]
 gi|61217175|sp|Q5M217|TILS_STRT1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217177|sp|Q5M6K9|TILS_STRT2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|55736098|gb|AAV59740.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus
           thermophilus LMG 18311]
 gi|55737988|gb|AAV61629.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus
           thermophilus CNRZ1066]
          Length = 421

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 20/186 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+       +
Sbjct: 21  VLVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEYEENYLRHWAKEHK 77

Query: 82  I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +   +S  S K S+       AAR  RY       K  + + ++TAH  DDQ ET++MR 
Sbjct: 78  VPFHYSAFSGKFSE------NAARTFRYDFFKRIMKEADYSALVTAHHADDQAETIFMRL 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+CD   +     I RPFL   ++ +            ED SN+   +
Sbjct: 132 LR--GSRLRHLSGICDVRSFGTG-QIIRPFLHIPKDQLPVTF------HFEDRSNSSLAY 182

Query: 200 ERVRVR 205
            R R+R
Sbjct: 183 LRNRIR 188


>gi|116626984|ref|YP_819603.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus
           thermophilus LMD-9]
 gi|116100261|gb|ABJ65407.1| tRNA(Ile)-lysidine synthetase, MesJ [Streptococcus thermophilus
           LMD-9]
 gi|312277429|gb|ADQ62086.1| tRNA(Ile)-lysidine synthetase, MesJ [Streptococcus thermophilus
           ND03]
          Length = 421

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 20/186 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+       +
Sbjct: 21  VLVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEYEENYLRHWAKEHK 77

Query: 82  I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +   +S  S K S+       AAR  RY       K  + + ++TAH  DDQ ET++MR 
Sbjct: 78  VPFHYSAFSGKFSE------NAARTFRYDFFKRIMKEADYSALVTAHHADDQAETIFMRL 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+CD   +     I RPFL   ++ +            ED SN+   +
Sbjct: 132 LR--GSRLRHLSGICDVRSFGTG-QIIRPFLHIPKDQLPVTF------HFEDRSNSSLAY 182

Query: 200 ERVRVR 205
            R R+R
Sbjct: 183 LRNRIR 188


>gi|327402415|ref|YP_004343253.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823]
 gi|327317923|gb|AEA42415.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823]
          Length = 415

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 92/194 (47%), Gaps = 28/194 (14%)

Query: 21  HILVAVSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVS 74
           +I VA S G DS  LL AL    HS              + +++ LRE  + KDE  +V 
Sbjct: 17  NICVACSAGLDSTVLLEALIQLGHSP-----------KILHINYQLREEDSEKDE-EFVR 64

Query: 75  DVCSRLRIAHSVVSWKNSKPQ---TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           D+  +  +   V+       +     +  AAR  R+A   +     +A  I+ AH  DDQ
Sbjct: 65  DLAKKYELEIEVIHCPKEITKGKGINIQEAARNFRHAHFQQFIHENSANRILLAHHQDDQ 124

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET +++  R     G G+ G+    ++     I RPFL   +E++R F L+  + W ED
Sbjct: 125 IETFFLQLLR-----GSGIFGLGG--MHAERKGIIRPFLSLTKEELRDFALENKLQWRED 177

Query: 192 PSNTDDRFERVRVR 205
            SN +++++R + R
Sbjct: 178 WSNQENKYKRNQFR 191


>gi|121998224|ref|YP_001003011.1| tRNA(Ile)-lysidine synthetase [Halorhodospira halophila SL1]
 gi|121589629|gb|ABM62209.1| tRNA(Ile)-lysidine synthetase [Halorhodospira halophila SL1]
          Length = 440

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 97/223 (43%), Gaps = 32/223 (14%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL AL  V   R       +A+ +DH L   +         VC RL + 
Sbjct: 23  VAFSGGRDSTALLHALAEV---RDRLPAPLAAVHIDHGLHPESARWAEACESVCERLGVG 79

Query: 84  HSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
                V    S  Q GL AAAREARY    E         ++ AH  DDQ ET  +R+ R
Sbjct: 80  LECRRVVVPPSAGQ-GLEAAAREARYRAFGE--LLAAGDCLVLAHHADDQAETFLLRALR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLW-------ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                G GL G+C      +  W       + RP L   R  + ++L  R++ W EDP+N
Sbjct: 137 -----GGGLHGLCA-----MPAWRPLGRGRLVRPLLEVPRTALTAYLQSRSLDWIEDPAN 186

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            D   +RV +R  V       L +   ++ D    + +AVA L
Sbjct: 187 RDPAHDRVYLRERV-------LPVLAARWPDATGHLQSAVASL 222


>gi|170760449|ref|YP_001788867.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407438|gb|ACA55849.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 468

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 45/305 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77
           I+V VSGG DSM LL  L  + +      I  + I+  H +R  E+  DE +YV + C  
Sbjct: 21  IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77

Query: 78  SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ ETV
Sbjct: 78  NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +N 
Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191

Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247
            + + R ++R     +++D     +   + +F ++  K NN +  +      +Y T  ++
Sbjct: 192 QNIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251

Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
                                 +I+ I+Q++ N++   ++ +L +S    G  I+LP   
Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNATGKFINLPSNI 311

Query: 286 SMERV 290
             E +
Sbjct: 312 KAENI 316


>gi|325264332|ref|ZP_08131063.1| tRNA(Ile)-lysidine synthase [Clostridium sp. D5]
 gi|324030403|gb|EGB91687.1| tRNA(Ile)-lysidine synthase [Clostridium sp. D5]
          Length = 470

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++  +SGG+DS+ LL  L   L  R    I+  A+ V+H LR E AK +  +V ++C   
Sbjct: 20  VIAGISGGADSVCLLFVL---LKLREEMGIEIVAVHVNHGLRGEAAKRDEEFVQELCREH 76

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           R+   V    V   + K +  +  A R  R     +       T I  AH  +D  ET+ 
Sbjct: 77  RVKCVVYRENVESISKKRKQSVEEAGRVVRREAFEKTLVECGGTKIAMAHHQNDNAETLL 136

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   R    KG+G        +  +   I RP L   R +I  ++      +C D +N +
Sbjct: 137 MNLARGTGLKGLGG-------IQPVAGKIIRPLLCLNRREIEQYVEAIGCGYCRDETNDE 189

Query: 197 DRFERVRVRRFV 208
           D + R R+R  V
Sbjct: 190 DDYTRNRLRHQV 201


>gi|311743365|ref|ZP_07717172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Aeromicrobium marinum DSM 15272]
 gi|311313433|gb|EFQ83343.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Aeromicrobium marinum DSM 15272]
          Length = 324

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 11/184 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++ VSGG+DS+  L A+ + ++ R       SA+ VDH L+  + +     ++ C  L 
Sbjct: 29  VVLGVSGGADSL-ALAAVTAFVARRE--AWDVSAVVVDHDLQPGSSEVAARAAEQCRGLG 85

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   VV  +      G  AAAR AR+  +   A    A +I  AHT DDQ ETV +   R
Sbjct: 86  LRAEVVGVEVGS-AGGPEAAARTARHGALRSAALAAGAEVICLAHTLDDQAETVLLGLGR 144

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM       ++  + RP L  RR D         + W +DP N D    R
Sbjct: 145 GSGARS--LSGMAG-----VDGLVRRPLLGLRRRDTEQICAAHGLPWWDDPHNRDPAHRR 197

Query: 202 VRVR 205
           VRVR
Sbjct: 198 VRVR 201


>gi|289579227|ref|YP_003477854.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528940|gb|ADD03292.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter italicus Ab9]
          Length = 464

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++ VSGG DS+ +L  L+++   +    +K   + V+H +R E A+ + ++V ++C +L
Sbjct: 21  IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEARRDAQFVENICCKL 77

Query: 81  RIAHSVVSWKNSKPQTGLMA-----AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           ++   +   K+ K     M      A R  RY    E  K +    I  AH  +D +ETV
Sbjct: 78  KLPFFLFE-KDVKKIAKEMGYSEEEAGRYVRYQAFEEVLKEVKGNKIAVAHNKNDVVETV 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++   R     G G++G+    +  +N  I RP +   R++I  +L ++ +    D +N 
Sbjct: 137 FLNLIR-----GAGMTGLIG--IKPVNGNIIRPLIEIERKEIEIYLKEKGLKPAIDFTNY 189

Query: 196 DDRFERVRVR 205
           +D ++R +VR
Sbjct: 190 EDLYKRNKVR 199


>gi|253582314|ref|ZP_04859537.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725]
 gi|251835853|gb|EES64391.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725]
          Length = 444

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 140/329 (42%), Gaps = 49/329 (14%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +V    I+V  SGG DS+ L+  L  +    +F  +    + ++H LR    D     S 
Sbjct: 17  IVENDKIVVGFSGGPDSVFLVEMLMKLKKSINFDIV---LVHINHLLRGENSDGDEKFSL 73

Query: 75  --------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                    V SR +I  +V+     K    L  A R+ARY L  E  +   A  I  AH
Sbjct: 74  EYGKKKGLQVFSR-KINITVLG---KKLGLTLEEAGRKARYDLFKEILRETGANKIALAH 129

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQLET   R  R     G GL G+ + I+   +++I RP     ++DI  +L   NI
Sbjct: 130 NKDDQLETFMFRLTR-----GAGLEGL-EGIIAKRDMYI-RPISEIYKKDIIKYLNDNNI 182

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK--MKKFQD--------LRVKVNNAVAM 236
           S+  D +N ++ F R  +R     +DL     K    KF+D        +R +VN  + +
Sbjct: 183 SYRIDETNFENEFTRNSIR-----LDLIPFIEKRYNPKFKDKLYSLIEEIR-EVNRVLEI 236

Query: 237 LIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
              KY+  +  SI  + Q D   +   L+ YL      +   +I L        +   L 
Sbjct: 237 KFEKYMVNNKLSIEKLKQLDKYLLSKVLIQYLYSYGIEVSRNKIQL--------IEDILH 288

Query: 296 SGKRGCVSIGR-VVIDRRANFLWITRAVR 323
            G    +S+ R  ++ +  +FL + + ++
Sbjct: 289 KGGSKDISLNREFILKKDYDFLTVEKNIK 317


>gi|240115610|ref|ZP_04729672.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18]
 gi|260440579|ref|ZP_05794395.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2]
          Length = 411

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 1   MALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 57

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 58  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 113

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 114 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 171

Query: 204 VRR 206
            R 
Sbjct: 172 FRH 174


>gi|157736476|ref|YP_001489159.1| tRNA(Ile)-lysidine synthase [Arcobacter butzleri RM4018]
 gi|157698330|gb|ABV66490.1| tRNA(Ile)-lysidine synthase [Arcobacter butzleri RM4018]
          Length = 326

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 15/198 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S +  +  L+A S G DS  L   L           I F    V++ +R  +KDEV Y  
Sbjct: 6   SAIKESKNLLAFSAGVDSSALFFLLLK-------QNIPFDIAIVNYNVRVQSKDEVNYAK 58

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++ S+      +   K  +  +     AR+ RY    E     +  +++TAH  +D+LE 
Sbjct: 59  ELASKYNKQIYIKDIK-LESTSNFEKMARDIRYKFFEEIIDENSYEVLITAHQLNDKLEW 117

Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
             M+       KG GL  +   +      N  + +P L   ++++ +FL Q NI +  D 
Sbjct: 118 FLMQ-----FTKGAGLVELIGFNEFEQKENYKVYKPLLEITKKELENFLKQENIKYFIDN 172

Query: 193 SNTDDRFERVRVRRFVRD 210
           SN D++++R   R    D
Sbjct: 173 SNFDEKYKRNYFRHNFSD 190


>gi|148381467|ref|YP_001256008.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC
           3502]
 gi|153932046|ref|YP_001385842.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|153936096|ref|YP_001389249.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. Hall]
 gi|148290951|emb|CAL85087.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928090|gb|ABS33590.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|152932010|gb|ABS37509.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. Hall]
 gi|322807852|emb|CBZ05427.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum H04402 065]
          Length = 468

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77
           I+V VSGG DSM LL  L  + +      I  + I+  H +R  E+  DE +YV + C  
Sbjct: 21  IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77

Query: 78  SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ ETV
Sbjct: 78  NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +N 
Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191

Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247
              + R R+R     +++D     +   + +F ++  K NN +  +      +Y T  ++
Sbjct: 192 QSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251

Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
                                 +I+ I+Q++ N++   ++ +L +S    G  ++LP   
Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNTTGKFVNLPSNI 311

Query: 286 SMERV 290
             E +
Sbjct: 312 KAENI 316


>gi|323436099|ref|ZP_01050432.2| PP-loop family protein [Dokdonia donghaensis MED134]
 gi|321496414|gb|EAQ38831.2| PP-loop family protein [Dokdonia donghaensis MED134]
          Length = 404

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 15/160 (9%)

Query: 55  AISVDHC---LRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREAR 106
            I V HC   LR    D +  +V   C    I   + S+  S      +T    AARE R
Sbjct: 13  TIRVAHCNFNLRGVESDGDQAFVESYCKLHNIPIYIKSFDTSAYAKIEKTSTQIAARELR 72

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           Y    E + T     I+TAH  +D+LET  +   R     G G+ G+  T + ++N  + 
Sbjct: 73  YQWFKELSATEGLDYILTAHHLNDELETFLINLGR-----GTGVKGL--TGIPEINERVV 125

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           RP L   R+ I+ + LQ  ++W ED SN  D + R  +R 
Sbjct: 126 RPLLPFSRKRIKEYALQEKLAWREDSSNATDNYVRNHLRH 165


>gi|294507733|ref|YP_003571791.1| cell cycle protein MesJ [Salinibacter ruber M8]
 gi|294344061|emb|CBH24839.1| cell cycle protein MesJ [Salinibacter ruber M8]
          Length = 468

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 13/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM  L  L  + +D         A+ V++ LR  A  +   V   C    
Sbjct: 24  VLVAASGGVDSMTCLSVLRRLDAD-------VHALHVNYGLRAGADGDEALVRRWCQEQS 76

Query: 82  --IAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             +  SVV+     + +     L AAAR  RY  ++  A  I A ++ T H  DDQ ET+
Sbjct: 77  PAVPLSVVALDAEARAASEDESLQAAARRLRYDALAAAAAEIGAPVVATGHHRDDQAETL 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R    +G+        +  D ++ + RP L  RR+ I ++     + W  DP+N 
Sbjct: 137 LLNLVRGSGPEGVAGMRPARPLEADPSVSLVRPLLDARRDAIEAYAESMGLPWRTDPTNQ 196

Query: 196 DDRFERVRVR 205
              ++R  +R
Sbjct: 197 RHDYDRGVIR 206


>gi|189485208|ref|YP_001956149.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287167|dbj|BAG13688.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 321

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 13/189 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+++VSGG DSM +L   H          I F A++ +H LR+ +  E   V ++ +   
Sbjct: 23  IILSVSGGMDSMCML---HLFWRLAKKMDIVFLAVNFNHNLRKESVKEAETVKNLSAEFG 79

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I        V   + K    +  A R  RY  +   +K      I TAH  +D  ETV M
Sbjct: 80  IDCLLEEIGVKEYSKKYSLSVETAGRNLRYLTLERISKKYKCNKIATAHNANDNAETVLM 139

Query: 138 RSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R  R     G G  +G+      + N+ + RP L  +R+ I  ++    + +C D SN  
Sbjct: 140 RLLR-----GSGNFAGIPQKRKINRNIVVIRPLLPVKRKFIEEYVRNHKLPFCTDKSNFS 194

Query: 197 DRFERVRVR 205
           D + R ++R
Sbjct: 195 DIYTRNKIR 203


>gi|312959409|ref|ZP_07773926.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6]
 gi|311286126|gb|EFQ64690.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6]
          Length = 439

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 12/187 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L S+    +   +  SA+ + H L+  A     +   VC  L + 
Sbjct: 24  VAFSGGLDSTVLLHLLASLAKTETLPPL--SAVHIHHGLQAAADAWPGHCQSVCDGLGVP 81

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+     +P      AAR+ARY   +E   T    +++T    DDQ ET+  R  R  
Sbjct: 82  LRVMR-VQVQPGASPERAARDARYQAFTE--VTGAGEVLLTGQHRDDQAETLLFRLLR-- 136

Query: 144 AEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              G G+ G+     +       + RP L   R  + ++     + W EDPSN D RF R
Sbjct: 137 ---GAGVRGLAAMPAHRRLAGGHLVRPLLDVSRVALENYADAHQLQWIEDPSNADPRFSR 193

Query: 202 VRVRRFV 208
             +R  V
Sbjct: 194 NYLRHRV 200


>gi|146308057|ref|YP_001188522.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina ymp]
 gi|145576258|gb|ABP85790.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina ymp]
          Length = 440

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 18/190 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS  LL  L           +  SAI V H L+  A     + + VC+RL I 
Sbjct: 23  IAFSGGLDSSVLLHLLADWAQHEELPPL--SAIHVHHGLQPAADAWPEHCALVCARLDIP 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V    ++   G        R    +   +     +++ A   DDQ ET+  R  R  
Sbjct: 81  LDIV---RAQVAPGASLEQAARRARYAAFAERLGPGEILLGAQHRDDQAETLLFRLLRGA 137

Query: 144 AEKGMGL-----SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             +G+       S  C T+L        RP L C R ++ ++     ++W EDPSN D+R
Sbjct: 138 GVRGLAAMPVSRSLGCGTLL--------RPLLGCSRAELHAYAQCHGLAWVEDPSNADER 189

Query: 199 FERVRVRRFV 208
           F R  +RR V
Sbjct: 190 FSRNFLRRQV 199


>gi|313889103|ref|ZP_07822759.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844843|gb|EFR32248.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 444

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 21/188 (11%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR--LR 81
           + VSGG+DSM L      +  D     I      ++H +RETAK +  +V   C    ++
Sbjct: 23  LGVSGGADSMYLFYNFMDLKDDWDLDII---VCHLNHGIRETAKRDEEFVKKSCQAYGIK 79

Query: 82  IAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
                V+     +N K  +    A R  RY    E++K      I+TAH  +D+ ETV  
Sbjct: 80  FISKTVNMDEFARNEKISS--EEAGRILRYEFFRENSK---GRKILTAHNANDRAETVLF 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G GL G+  + +  +N  + RP +  +RE+I  +L +  + + +D +N ++
Sbjct: 135 NIMR-----GTGLKGL--SGISHVNKDVYRPLINIKREEIEDYLHKNKLQYYDDETNFEE 187

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 188 IYTRNKIR 195


>gi|262381387|ref|ZP_06074525.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296564|gb|EEY84494.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 438

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 152/362 (41%), Gaps = 74/362 (20%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           I ++R ++   R L     +LV +SGG+DS+ LL  L          ++ +  I++ HC 
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51

Query: 62  --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             LR  E+ +DE  +  +    L     +I    +S+   K    +  AARE RYA   E
Sbjct: 52  FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGEK-HLSIEMAARELRYAWFEE 109

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             + +       AH  DD +ETV M   R     G G+ GM    +   N +I RP L  
Sbjct: 110 MRERLGGQATAVAHHRDDSVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162

Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            REDI ++L  +  ++  D +N  D     F R+ V   + +I+  A     +  + L  
Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273
               + A  I  Y+    R  + +S D L+I +        T+L+ LL+       VS  
Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276

Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332
           I       PG        LF  S         R++ DR  ++LWIT   +    T +L P
Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITPLEKKEERTFVLDP 320

Query: 333 EE 334
           E+
Sbjct: 321 EK 322


>gi|189461602|ref|ZP_03010387.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136]
 gi|189431712|gb|EDV00697.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136]
          Length = 426

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           ILVA+SGG+DS+ LL  L  +L         ++ ++  HC   LR  E+ +DE  +V ++
Sbjct: 22  ILVALSGGADSVALLRVL--LLEG-------YNCVAA-HCNFHLRGEESDRDE-EFVQNL 70

Query: 77  CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  L +   V+ +      S+ +  +  AARE RY    +    + A++I  AH  DD +
Sbjct: 71  CRGLDVPLQVIHFDTNGYASRKRISIEMAARELRYEWFEQVRLQVGASVIAVAHHRDDSV 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +   R     G G++G+    +  +N  + RP L   R+DI +FL      +  D 
Sbjct: 131 ETFLLNLVR-----GTGINGL--KGIAAVNGKVVRPLLDVSRDDILAFLADLKQDYVTDS 183

Query: 193 SNTDDRFERVRVR 205
           +N +D + R ++R
Sbjct: 184 TNLEDEYLRNKLR 196


>gi|13357633|ref|NP_077907.1| hypothetical protein UU077 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|61217428|sp|Q9PR68|TILS_UREPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|11356774|pir||A82937 conserved hypothetical UU077 [imported] - Ureaplasma urealyticum
 gi|6899028|gb|AAF30482.1|AE002107_6 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
          Length = 333

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L AVSGG DSM +L      +              V++  RE++  + + V D C +  +
Sbjct: 21  LAAVSGGPDSMAMLNMYKRNIR---------VVCHVNYHKRESSDRDQQIVVDFCRKNNL 71

Query: 83  AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++      ++           AR  RY    E  K  N   +  AH FDD LET YM
Sbjct: 72  IIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDFLETAYM 131

Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +  R       G+  S + + I+      + RP L  R++ ++ +  +  I +  D +N 
Sbjct: 132 QRARQSKALFYGIKESNVINGII------VKRPVLFVRKQTLQRYCDENKIKYGIDETNE 185

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF 223
            D +ER RVR+ +    L+ +Y   KKF
Sbjct: 186 LDIYERNRVRKIISSWSLNEVY-DFKKF 212


>gi|149197877|ref|ZP_01874926.1| hypothetical protein LNTAR_05301 [Lentisphaera araneosa HTCC2155]
 gi|149139098|gb|EDM27502.1| hypothetical protein LNTAR_05301 [Lentisphaera araneosa HTCC2155]
          Length = 417

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 26/192 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           LV  SGG+DSM LL  + S+      G++    +  +H LR + +K + ++  + C    
Sbjct: 13  LVLFSGGADSMALLHLMQSL------GELDI-VLHFNHNLRGDDSKQDEQFCRNYCEDNG 65

Query: 82  IAHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +   VV+    K      G    AR  R   + +H    N   I  AH  DD  E+ +MR
Sbjct: 66  LELIVVNLDLDKERHANEGDEQLARRLRLQFLEDHYCGWN---IYLAHHLDDVKESFFMR 122

Query: 139 SQRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + R     G   SG+C    +  L  L L   RP L   RE +RS+L + N++W ED SN
Sbjct: 123 AMR-----GANSSGLCALRRERKLGTLTLI--RPLLDYSREQLRSYLKENNLTWREDSSN 175

Query: 195 TD-DRFERVRVR 205
            D D  +R  VR
Sbjct: 176 QDADYCDRNYVR 187


>gi|307327055|ref|ZP_07606245.1| tRNA(Ile)-lysidine synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887353|gb|EFN18349.1| tRNA(Ile)-lysidine synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 367

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 29/195 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L A SGG+DSM L  AL +  + R+   ++   ++VDH L++ +      V+D    L 
Sbjct: 59  VLAACSGGADSMALASAL-AFEAPRA--GLRAGGVTVDHGLQQGSDARAAEVADRMRALG 115

Query: 82  IAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +A     +V   +   P+     A   A       H     AT ++  HT DDQ ETV +
Sbjct: 116 LAPVEAIAVSVGRGGGPEAAARDARYAALDGAAERH----GATAVLLGHTRDDQAETVLL 171

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWIS-------RPFLRCRREDIRSFLLQRNISWCE 190
              R    +   LSGM          W+S       RPFL+  R  +R   L +++   +
Sbjct: 172 GLARGSGTR--SLSGMA---------WVSGADGRYRRPFLQLDRHTVREACLAQSLPVWD 220

Query: 191 DPSNTDDRFERVRVR 205
           DP N D  + R RVR
Sbjct: 221 DPHNVDPSYTRSRVR 235


>gi|261403929|ref|YP_003240170.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Y412MC10]
 gi|261280392|gb|ACX62363.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Y412MC10]
          Length = 476

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 83/188 (44%), Gaps = 9/188 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I+VAVSGG DS+ LL  LH +   R+   ++     V H  R+ +  E   V ++   L 
Sbjct: 29  IVVAVSGGPDSVALLHVLHEISQHRT--PLRLICAHVHHGFRKESDQEAEMVRELAESLG 86

Query: 81  ---RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
                A   +     +   G   AARE RY  + + A+  NA  +  AH  DDQ ETV+M
Sbjct: 87  LPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTARKHNARSVALAHHADDQAETVFM 146

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+G      T   +  + + RPFLR  + DI          +  D SN   
Sbjct: 147 RLLRGSGLSGLGGIKFKRT---EKKVELIRPFLRMYKADIVELCRVCGFQYAVDHSNLQT 203

Query: 198 RFERVRVR 205
           ++ R  +R
Sbjct: 204 KYRRNAIR 211


>gi|26553599|ref|NP_757533.1| cell cycle protein MesJ [Mycoplasma penetrans HF-2]
 gi|61216654|sp|Q8EWQ7|TILS_MYCPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|26453605|dbj|BAC43937.1| predicted cell cycle protein MesJ [Mycoplasma penetrans HF-2]
          Length = 295

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 116/301 (38%), Gaps = 45/301 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DSM LL     ++          +   V++  RE + ++ + V D C +  +
Sbjct: 6   LIAVSGGPDSMALLNKKRHLVE---------AVCHVNYHDREDSDNDEKIVRDYCKKYNL 56

Query: 83  AHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              V           K    L    RE RY    + ++ +    I+ AH  +D LE+ YM
Sbjct: 57  KLFVFDTHKDDVSKYKDINNLQTWYREIRYDFFEKISQELGIKKILIAHQKNDFLESAYM 116

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              ++     +G+           +L + RP L   ++ +  +   +NI +  D +N  D
Sbjct: 117 SLNKNKKNLFLGIRRKSKF----RSLILIRPLLNKTKKSLEQYCRSKNIEFVIDYTNFWD 172

Query: 198 RFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           R+ R  VR+ + + D       YLK+K F        N   M   K L     + I    
Sbjct: 173 RYSRNVVRKMMAEWDKKTFQKFYLKVKWF--------NLKNMFFIKLLDSKFNNWIKQDF 224

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISL--------PGYRSMERVMLFLKSGKRGCVSIGR 306
           DI         Y L++        I L        P    +E+++ F+   K G V   R
Sbjct: 225 DIN--------YFLKIKNNYKESLIYLFLNHIGIKPNENKIEQIIEFINKNKNGSVKKYR 276

Query: 307 V 307
           +
Sbjct: 277 L 277


>gi|170761927|ref|YP_001752156.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|183508435|ref|ZP_02957979.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701596|ref|ZP_02971305.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168827504|gb|ACA32766.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|182675843|gb|EDT87748.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186700826|gb|EDU19108.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 330

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L AVSGG DSM +L      +              V++  RE++  + + V D C +  +
Sbjct: 18  LAAVSGGPDSMAMLNMYKRNIR---------VVCHVNYHKRESSDRDQQIVVDFCRKNNL 68

Query: 83  AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++      ++           AR  RY    E  K  N   +  AH FDD LET YM
Sbjct: 69  IIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDFLETAYM 128

Query: 138 RSQRDYAE--KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +  R       G+  S + + I+      + RP L  R++ ++ +  +  I +  D +N 
Sbjct: 129 QRARQSKALFYGIKESNVINGII------VKRPVLFVRKQTLQRYCDENKIKYGIDETNE 182

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF 223
            D +ER RVR+ +    L+ +Y   KKF
Sbjct: 183 LDIYERNRVRKIISSWSLNEVY-DFKKF 209


>gi|310829345|ref|YP_003961702.1| tRNA(Ile)-lysidine synthetase [Eubacterium limosum KIST612]
 gi|308741079|gb|ADO38739.1| tRNA(Ile)-lysidine synthetase [Eubacterium limosum KIST612]
          Length = 470

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 20/193 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           IL+ VSGG+DS+ LL  L      +    ++ +A  ++H +R  A +E   +V   C   
Sbjct: 21  ILIGVSGGADSLALLYFLKKY---QGVLNVEIAAAHLNHEIRGKAAEEDHAFVKQFC--- 74

Query: 81  RIAHSVVSWKNS--------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            I  S++ +  S        K +  L  A REARYA   E   +     +   H  DDQ 
Sbjct: 75  -IKQSILLYDKSVDVIQLAKKNKISLEEAGREARYAFFKELQSSEAYNKLALGHHLDDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV MR  R    K  G++GM      + N  I RP L   ++ + S+  +  + +  D 
Sbjct: 134 ETVLMRLIRGTGVK--GVAGMLSETKGESN--IIRPLLCVDKKTVISYCKKNGLHYRTDN 189

Query: 193 SNTDDRFERVRVR 205
           +N +    R ++R
Sbjct: 190 TNFETDVTRNKLR 202


>gi|311087577|gb|ADP67656.1| cell cycle protein MesJ [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 398

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 8/186 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS    + L+ +L  +    IK  AI ++H L   +K    +   +C+   I
Sbjct: 15  LVAYSGGLDST---VLLYKLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V +         L    R  RY +I  H       +++T H  +DQ ET ++  +R 
Sbjct: 72  PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FYDEILLTGHHINDQCETFFLSLKR- 128

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLS M    L+     I RPFL+  + +++++  ++ + W ED SN +  ++R 
Sbjct: 129 -GSGPTGLSSMSFETLFGTKK-IVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186

Query: 203 RVRRFV 208
            +R  V
Sbjct: 187 FIRNEV 192


>gi|294654541|ref|XP_456602.2| DEHA2A06402p [Debaryomyces hansenii CBS767]
 gi|199428964|emb|CAG84558.2| DEHA2A06402p [Debaryomyces hansenii]
          Length = 502

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 134/304 (44%), Gaps = 44/304 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRET 65
           E +R   ++  +P  I+VA+SGG DS+ L   L      R +   ++ +AI++DH  R  
Sbjct: 9   EVLRKCFKNGTFPERIVVALSGGVDSLCLTYLLGQF--KRIYKPSLQITAITIDHKYRAG 66

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----AAREARYALISEHAKTINATL 121
           +  E   V  +     + H V + +      G +      ARE RY +  +  + ++   
Sbjct: 67  SGKEAEKVGVLVRPWGVKHIVKTLEYEDRDIGKITNFEEVAREKRYDIFEQVCRELDVKS 126

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGM-GL-------------SGMCDTILYDLNLWISR 167
           ++ AH  +DQ+ET   R Q++ +  G+ GL             S   D+I       + R
Sbjct: 127 LIVAHNLNDQIETFLQRLQQNSSIFGLVGLRTVDHLPISPTSPSENGDSI------HVVR 180

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDIDLHALYLKMKKFQDL 226
           P L   + +I     +  I W ED +N+D    R   +R  V ++  H L       QD+
Sbjct: 181 PLLSFDKSEIIETCTKNGIRWFEDHTNSDIHLTRRNLLRHIVSEVVPHRL-----DNQDI 235

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAI----SQDILNIDSTL----LFYLLRVSAAICGGQ 278
            ++  NA++++  + L      I+++       I NI++ L    LF L + + ++    
Sbjct: 236 PIEECNALSLVSKESLVKTHNEILSLVCEMQHQIANIENHLKLRGLFSLDKKNLSLT--- 292

Query: 279 ISLP 282
           +SLP
Sbjct: 293 VSLP 296


>gi|17545889|ref|NP_519291.1| cell cycle protein [Ralstonia solanacearum GMI1000]
 gi|61216686|sp|Q8Y074|TILS_RALSO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|17428184|emb|CAD14872.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 462

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 97/198 (48%), Gaps = 14/198 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----DEVRYVSDVC 77
           + VA+SGG DS  LL A+ +   D +   ++  A+ + H L+  A        R  + V 
Sbjct: 26  VAVALSGGRDSAALLHAV-AAWRDAAGVPVRLVALHIHHGLQADADAWEAACARMAAAVG 84

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +  R+    VS    +   G+  AAREARYA +        ATL++TAH  DDQ ETV +
Sbjct: 85  AAFRVRRVRVSTDAGR---GIEEAAREARYAALDALCAETGATLLLTAHHLDDQAETVLL 141

Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  R     G GL G+    +  +  + + RP+L   R DI ++     ++W EDPSN D
Sbjct: 142 QLLR-----GAGLDGLSAMPMARERRVTLLRPWLDVPRGDIEAYARAHALAWVEDPSNGD 196

Query: 197 DRFERVRVRRFVRDIDLH 214
            R+ R  +R  +  +  H
Sbjct: 197 ARYARNALRPLLAGMAGH 214


>gi|218890137|ref|YP_002439001.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58]
 gi|254236552|ref|ZP_04929875.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126168483|gb|EAZ53994.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218770360|emb|CAW26125.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58]
          Length = 442

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 80/189 (42%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L   
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQVVCRSLGIP 82

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R+    V+   S  Q     AAR+ARY      A      +++TA   DDQ ET+  R 
Sbjct: 83  LRVERVQVAVGGSIEQ-----AARDARYRAF--QANLGEGQVLLTAQHLDDQAETLLFRL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+        +       + RP L   R ++ ++     + W EDPSN D RF
Sbjct: 136 LRGAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRF 192

Query: 200 ERVRVRRFV 208
            R  +RR +
Sbjct: 193 SRNYLRREI 201


>gi|304405794|ref|ZP_07387452.1| tRNA(Ile)-lysidine synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304345037|gb|EFM10873.1| tRNA(Ile)-lysidine synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 480

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 81/189 (42%), Gaps = 11/189 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I++AVSGG DSM LL  +H + +     ++K  A  VDH  R   +  E   V     +L
Sbjct: 24  IVIAVSGGPDSMMLLHLMHRIAT---ADRLKLVAAHVDHGFRGAESTAEGEQVRAFAEQL 80

Query: 81  RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            IA   V         +TG+    A+R  RY  + + A    A  I  AH  DDQ ETV 
Sbjct: 81  GIAFEAVKLDMPTYIEETGMNGQLASRLRRYEFLHQVASRHGANRIALAHHADDQAETVL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R                  D N+ + RP LR  + DI  ++ Q  I +  D SN  
Sbjct: 141 MRMLRGAGAG---GLAGIQPKRLDKNVELIRPLLRMYKTDIFRYISQYEIPYAMDSSNEK 197

Query: 197 DRFERVRVR 205
             + R  +R
Sbjct: 198 RDYFRNEIR 206


>gi|227873318|ref|ZP_03991580.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268]
 gi|227840833|gb|EEJ51201.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268]
          Length = 342

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 38/207 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKD---------- 68
            IL+A+SGG+DSM LL  L  + +  SF      A+ V H +R  E  +D          
Sbjct: 24  QILLALSGGADSMYLLYFLKELQNHLSFS---LRAMHVQHGIRGDEAVEDATFSRQQAEL 80

Query: 69  -EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE-----HAKTINATLI 122
            +V ++   CS        V     + + G+  AAR  RY  + E      A++   T I
Sbjct: 81  YQVPFLEYTCS--------VPDYAEENKLGIEEAARTLRYKALKEEALRWQAESGRKTKI 132

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRREDIR 178
             AH  DDQ ET+     R     G G SG+     + +L +    + RP L  R+E+I 
Sbjct: 133 ALAHHMDDQAETILFHLIR-----GAGFSGISGMKAEDLLSEAETTLLRPLLSLRKEEIL 187

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
             L +  I + ED +N D  + R  +R
Sbjct: 188 KRLEELGIPYREDSTNRDKSYARNYLR 214


>gi|257459329|ref|ZP_05624442.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter gracilis RM3268]
 gi|257443258|gb|EEV18388.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter gracilis RM3268]
          Length = 333

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 26/215 (12%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV---R 71
           +L+     L+A S G DS  L   L           +KF    VD+ +R  +KDEV   R
Sbjct: 13  ALLRAGKNLLAFSHGVDSTALFYLLDEA-------GVKFDLAIVDYNVRAQSKDEVASAR 65

Query: 72  YVSDVCSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           Y++   ++     SV +   N + +      AR ARY   +E  +      ++ AH FDD
Sbjct: 66  YLAVKFNKQIYVKSVRLGASNFEHE------ARAARYDFFAEICRERGYENLILAHQFDD 119

Query: 131 QLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + E   M+  R     G GLS   GM   +    +  I+RP L  R+ ++  FL +RN+ 
Sbjct: 120 KFEWFLMQLGR-----GAGLSELLGM-QELEASEDYVIARPLLGVRKCELERFLRERNLK 173

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           +  D +N  DRF+R  +R    +  L+  +  +KK
Sbjct: 174 YFTDETNLTDRFKRGFIRAKFSEPFLNECFGGVKK 208


>gi|195977168|ref|YP_002122412.1| tRNA(Ile)-lysidine synthase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867630|ref|YP_002743578.1| PP-loop family protein [Streptococcus equi subsp. zooepidemicus]
 gi|226695546|sp|B4U5H9|TILS_STREM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|259533766|sp|C0MC74|TILS_STRS7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|195973873|gb|ACG61399.1| tRNA(Ile)-lysidine synthase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700906|emb|CAW97574.1| PP-loop family protein [Streptococcus equi subsp. zooepidemicus]
          Length = 427

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 18/191 (9%)

Query: 18  YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           + AH  +L+AVSGG DSM LL  LH+  ++    +I+     V+H  R  + DE  Y+  
Sbjct: 16  FDAHQAVLIAVSGGVDSMNLLHFLHAFQAEL---QIRIGIAHVNHKQRPESDDEEAYLRS 72

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              +  I   V  ++ +  +     AAR  RY    E  +  + + ++TAH  DDQ ET+
Sbjct: 73  WAKKHAIPIYVAYFQGAFSEN----AARHFRYQFFEEIMQQEHYSALVTAHHADDQAETI 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R    +   L+G+ +   +     I RPFL   +E++       N    ED SN 
Sbjct: 129 LMRLIR--GSRLRHLAGIREVQPFATGQLI-RPFLTVSKEEL------PNPFHFEDHSND 179

Query: 196 DDRFERVRVRR 206
              + R RVR 
Sbjct: 180 SMAYFRNRVRH 190


>gi|153939118|ref|YP_001392881.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str.
           Langeland]
 gi|152935014|gb|ABS40512.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str.
           Langeland]
 gi|295320858|gb|ADG01236.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str. 230613]
          Length = 468

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77
           I+V VSGG DSM LL  L  + +      I  + I+  H +R  E+  DE +YV + C  
Sbjct: 21  IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYM 77

Query: 78  SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ ETV
Sbjct: 78  NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +N 
Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191

Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247
              + R R+R     +++D     +   + +F ++  K NN +  +      +Y T  ++
Sbjct: 192 QSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251

Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
                                 +I+ I+Q++ N++   ++ +L +S    G  ++LP   
Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNATGKFVNLPSNI 311

Query: 286 SMERV 290
             E +
Sbjct: 312 KAENI 316


>gi|239998936|ref|ZP_04718860.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae 35/02]
 gi|240014155|ref|ZP_04721068.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI18]
 gi|240016590|ref|ZP_04723130.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA6140]
 gi|240080779|ref|ZP_04725322.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA19]
 gi|240112854|ref|ZP_04727344.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae MS11]
 gi|240117903|ref|ZP_04731965.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1]
 gi|240121717|ref|ZP_04734679.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID24-1]
 gi|240123462|ref|ZP_04736418.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID332]
 gi|240125707|ref|ZP_04738593.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679]
 gi|240128163|ref|ZP_04740824.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-93-1035]
          Length = 411

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 1   MALSGGLDSVVLLHLL--VCAGKRAGFVP-EALHIHHGLSPRADDWADFCRNYCDMLGVG 57

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 58  LETVKVCVEKNGLGIEAAARQKRYAEFAEKGFDV----LALAHHRDDQIETFMLAVARGG 113

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R
Sbjct: 114 GLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNR 171

Query: 204 VRR 206
            R 
Sbjct: 172 FRH 174


>gi|291613873|ref|YP_003524030.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291583985|gb|ADE11643.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 445

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 10/184 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +HILV +SGG DS+ LL  LH +     +   + SA+ V H +   A     + +D+C+R
Sbjct: 25  SHILVGLSGGMDSVVLLHLLHILAPRFEW---RLSALHVHHGISPNADAWANFCADLCAR 81

Query: 80  LRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             I   +  V     + + G+ AAAR+ R+A  +          +  AH  DDQ ET+ +
Sbjct: 82  KGIPLHIERVDIAPLRDEHGIEAAARKLRHAAFARQP----CDYVALAHHADDQAETLLL 137

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R    KG+       +        I RP L   R+++  +  Q+ + W ED SN DD
Sbjct: 138 QLLRGAGVKGVAAMPAVKSATPHARA-ILRPLLDVSRDELSEYAQQQGLRWVEDESNADD 196

Query: 198 RFER 201
            + R
Sbjct: 197 AYPR 200


>gi|281420131|ref|ZP_06251130.1| tRNA(Ile)-lysidine synthase [Prevotella copri DSM 18205]
 gi|281405931|gb|EFB36611.1| tRNA(Ile)-lysidine synthase [Prevotella copri DSM 18205]
          Length = 449

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 21/192 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           +VA+SGG+DS+ LL+ L ++        +  SA   +  LR  E+ +DE ++  ++C + 
Sbjct: 25  IVALSGGADSVALLLILKNI-------GLNISAAHCNFHLRGEESDRDE-QFCINLCQQQ 76

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I+ S + +         +  +  AAR  RY+  S+  K ++A  I  AH  DD +ET+ 
Sbjct: 77  GISLSRIHFDTYAYAHLHKVSIEMAARNLRYSYFSQLVKDLHAGGICVAHHRDDNVETLL 136

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G+ G+      + N  I RP L   R+DI  +L ++   +  D +N +
Sbjct: 137 LNLLR-----GSGVDGLAAIAPKNGN--ILRPLLCISRQDILQYLKEKKQDFVTDSTNLE 189

Query: 197 DRFERVRVRRFV 208
           D   R ++R  V
Sbjct: 190 DDALRNKIRHHV 201


>gi|309781266|ref|ZP_07676003.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Ralstonia sp.
           5_7_47FAA]
 gi|308920087|gb|EFP65747.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Ralstonia sp.
           5_7_47FAA]
          Length = 472

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 27/215 (12%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDE 69
           F V     P  + +A+SGG DS  L   LH+  + R  G +++  A+ + H L   A   
Sbjct: 30  FVVSGDAEPPTVAIALSGGRDSAAL---LHACAAWRDAGARVQLVALHIHHGLHADA--- 83

Query: 70  VRYVSDV--CSRLRIAHSV-VSWKNSKPQT------GLMAAAREARYALISEHAKTINAT 120
                DV  C+  R+A +V V++   +         G+  AAREARYA +        A+
Sbjct: 84  -----DVWECACRRMAQAVGVTFHARRVNVAVDAGRGVEEAAREARYAALEALCTETGAS 138

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRS 179
           +++TAH  DDQ ETV ++  R     G GL G+    +     + + RP++   R +I  
Sbjct: 139 ILLTAHHQDDQAETVLLQLMR-----GAGLDGLAAMPMARAGAVTLLRPWVDAPRSEIEL 193

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           +     + W EDPSNTD R+ R  +R  +  +  H
Sbjct: 194 YAHAHALCWVEDPSNTDARYARNALRPLLAGMADH 228


>gi|184156933|ref|YP_001845272.1| ATPase [Acinetobacter baumannii ACICU]
 gi|332873990|ref|ZP_08441925.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6014059]
 gi|183208527|gb|ACC55925.1| predicted ATPase of the PP-loop superfamily [Acinetobacter
           baumannii ACICU]
 gi|332737731|gb|EGJ68623.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6014059]
          Length = 427

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L++ + +    V+   + L I + +   K       L A AR+ARY    
Sbjct: 17  KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 74

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169
           +H +     +++ AH   DQ ETV +R        G G+ G+     I Y  ++ I RPF
Sbjct: 75  QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 127

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           L   RE I  +  Q  + + +DP N D  ++RV  R 
Sbjct: 128 LDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCRE 164


>gi|291528871|emb|CBK94457.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale M104/1]
          Length = 247

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 19/215 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I + VSGG DS+ LL AL  +   RSF  + F   AI+VD    +    +++ V  +C  
Sbjct: 26  IAIGVSGGKDSLTLLYALSGI---RSFYPVPFELVAIAVDLGYEDF---DLKPVKALCDE 79

Query: 80  LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           L +   VV       S + SK Q    +   + R   +++ A ++    I  AH  DD +
Sbjct: 80  LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+++        +G   S    T L    L I RP +     D++ F  + N+  C++P
Sbjct: 140 ETMFLS----LLYEGQFYSFAPVTQLDGSGLTIIRPLMYVGESDVKGFKNKYNLPVCKNP 195

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              D    R  V++ VR +++    +K + F  ++
Sbjct: 196 CPYDGHTRREYVKQLVRQLNMENPGVKKRLFSAIQ 230


>gi|291521617|emb|CBK79910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Coprococcus catus GD/7]
          Length = 476

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVR-YVSDVCSR 79
           ++V VSGG+DS+ LL    SVL +      ++ +A+ + H LR  A D  R +V+ +C  
Sbjct: 26  VVVGVSGGADSVCLL----SVLKNLQMSMALQLTAVHIHHGLRGEAADRDRDFVTALCED 81

Query: 80  LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           ++I      + +     +       A R+ RY    E  +   A+ I  AH  DD  ETV
Sbjct: 82  MQIPCVCFQADIRAMAKEQHLSEEEAGRKFRYDCFEEVRQERQASKIAVAHHRDDLAETV 141

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G GL G+    +  +   I RP L   R DI ++L ++ +S+  D +N 
Sbjct: 142 LLNLFR-----GSGLKGLSGIPM--MRGCIVRPLLGVGRADIEAYLGRQGMSYRNDATNF 194

Query: 196 DDRFERVRVR 205
           +  + R R+R
Sbjct: 195 ETEYTRNRIR 204


>gi|258647528|ref|ZP_05734997.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259]
 gi|260852303|gb|EEX72172.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259]
          Length = 480

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 25/197 (12%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRY 72
           V    +LVAVSGG+DS+ LL  LH +            A  V HC   LR  A D +  +
Sbjct: 28  VKDKRLLVAVSGGADSVALLRVLHQL----------GYACEVAHCNFHLRGEASDRDAAF 77

Query: 73  VSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           VSD+C  L +   +  +            +  AAR+ RY    +     N + +  AH  
Sbjct: 78  VSDLCRDLGVPFHLRDFATEAFARSQAVSVEMAARDLRYQWFDQLLAERNLSAVAVAHHK 137

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D +ET ++     +  +G GL G+   + Y     I RP L   R +I ++L      +
Sbjct: 138 EDNVETFFL-----HLARGSGLHGLV-GMRYQRGKII-RPLLDVSRREIEAWLSAIGQPF 190

Query: 189 CEDPSNTDDRFERVRVR 205
             D +N D RF+R R+R
Sbjct: 191 VTDETNADVRFKRNRLR 207


>gi|126640676|ref|YP_001083660.1| cell cycle protein [Acinetobacter baumannii ATCC 17978]
 gi|126386560|gb|ABO11058.1| cell cycle protein [Acinetobacter baumannii ATCC 17978]
          Length = 427

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L++ + +    V+   + L I + +   K       L A AR+ARY    
Sbjct: 17  KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 74

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169
           +H +     +++ AH   DQ ETV +R        G G+ G+     I Y  ++ I RPF
Sbjct: 75  QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 127

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           L   RE I  +  Q  + + +DP N D  ++RV  R 
Sbjct: 128 LDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCRE 164


>gi|255038959|ref|YP_003089580.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053]
 gi|254951715|gb|ACT96415.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053]
          Length = 444

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 26/245 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDE--VRYVSD 75
           L+AVSGG DS+ ++   H           +     + HC   LR  E+  DE  VR ++ 
Sbjct: 22  LLAVSGGIDSVVMVHLFHE----------QGLPAGIAHCNFGLRGEESNADEAFVRALAA 71

Query: 76  VCS-RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            C+  + ++   V   +         AARE RY    E  ++     I TAH  +D LET
Sbjct: 72  RCNFPVFVSDPDVKTFSKSHSISTQMAARELRYEWFEEIRRSSGYGWIATAHHSNDSLET 131

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +   R     G GL GMC   +  +   + RP +   R ++R +  +  I+W ED SN
Sbjct: 132 LLLNLAR-----GTGLPGMCG--IAPVRDHLIRPLILSNRAEVRRYAEENGITWREDRSN 184

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
             D ++R +VR  V  + L  L   ++   +   +   A   L+ +YL      I+  S 
Sbjct: 185 ASDDYQRNKVRHHVVPV-LTDLNPSLETTFNASAERLRAANTLLDEYLGAWKSRIMRDSG 243

Query: 255 DILNI 259
             +NI
Sbjct: 244 GSMNI 248


>gi|325288401|ref|YP_004264582.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963802|gb|ADY54581.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271]
          Length = 475

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 89/199 (44%), Gaps = 26/199 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-----VDHCLRETAKDEVRYVS 74
           + ILVAVSGG DS    IAL  +L DR + + + S IS     + H +R  +  E   V 
Sbjct: 18  SRILVAVSGGPDS----IALWHIL-DR-YAREEKSDISLVISHIHHGVRRESDQEEEMVR 71

Query: 75  DVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +  +     SV  +K      K +     AARE RYA   E        LI TAH   D
Sbjct: 72  KLAGKFETELSVHRFKAKDYADKSKKSFQEAAREWRYARFQEDKDKYQCHLIATAHHLGD 131

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET+  R  R     G G SG+    +Y     I RP L   +++I ++     +S+  
Sbjct: 132 QAETLLYRLLR-----GSGTSGLGG--IYPSAGEIIRPLLTVSKQEILAYCEAEGLSFAL 184

Query: 191 DPSNTDDRFERVRVRRFVR 209
           D SN    FE V VR  +R
Sbjct: 185 DQSN----FEPVYVRNKIR 199


>gi|145589046|ref|YP_001155643.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047452|gb|ABP34079.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 442

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 11/194 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL  +    +       +  A  + H L++ A D + +   +  + +
Sbjct: 17  IAVALSGGLDSVVLLDTVCKAQTTYKDSPTEIWAFHIHHGLQKPADDWLIFCEKLAKKYK 76

Query: 82  IAHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I     ++       Q  + A AR  RY  ++E         ++ AH  +DQ ETV ++ 
Sbjct: 77  IGFDFRLLHLAQDTDQGNVEARARAGRYEALAELCVEYGIGDLLLAHHQNDQAETVLLQL 136

Query: 140 QRDYAEKGMGLSGMCDT--ILYD---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            R       GLSGM     + +D   + LW  RP L   R ++  +     + W EDPSN
Sbjct: 137 LRGAGV--AGLSGMPHERELTHDQSRITLW--RPLLNQSRAELEVYAKANKLKWIEDPSN 192

Query: 195 TDDRFERVRVRRFV 208
              +F R  +R+ +
Sbjct: 193 QKTQFRRNAIRKQI 206


>gi|313681435|ref|YP_004059173.1| tRNA(ile)-lysidine synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313154295|gb|ADR32973.1| tRNA(Ile)-lysidine synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 338

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 20/184 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS  L    H +L +     I F    V++  RET+  E +    + +R  
Sbjct: 15  VLLAFSGGVDSTALF---HLLLEN----NIAFDIAHVNYHTRETSDAEEKNAERLAAR-- 65

Query: 82  IAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             HS+  + +S    G+     ARE RY       K    T ++TAH  +D+LE + M+ 
Sbjct: 66  --HSLQCYAHSCRLGGINFEHRAREERYRFFGYLMKKHGYTYLLTAHQLNDRLEWLMMQI 123

Query: 140 QRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
            R     G GL  M     +D    + I RP L   R+ I ++L +R I    D SN D+
Sbjct: 124 CR-----GSGLPEMLGIRSHDSRDGIEILRPLLEWDRDSIEAYLHERKIPHHIDESNADE 178

Query: 198 RFER 201
           R+ R
Sbjct: 179 RYTR 182


>gi|306820236|ref|ZP_07453878.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551733|gb|EFM39682.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 472

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 23/193 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR---YVSDVCS 78
           ILVA+SGG+DS+ LL  L  +  + +       A  +DH +R    D VR   Y  D C 
Sbjct: 22  ILVALSGGADSLCLLDILIRLKDEYNLT---LYAAHLDHMIR--GVDAVRDALYCYDFCK 76

Query: 79  RLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +  +     A  VV+ K  +   G+   AR  RY+++ E  + +N   I  AH  DDQ E
Sbjct: 77  KNDVPFFLRAVDVVN-KAREEFRGVEETARTERYSMLFEIKQRLNIDKIAVAHNLDDQAE 135

Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T+ M+  R    +G+ G+    D I+        RP L   +++I  +  +  +    D 
Sbjct: 136 TILMKLMRGSGLQGLRGMDYKRDDII--------RPLLDIYKKNINKYCEENCLEPRVDK 187

Query: 193 SNTDDRFERVRVR 205
           +N +D++ R ++R
Sbjct: 188 TNFEDKYTRNKIR 200


>gi|210629984|ref|ZP_03296207.1| hypothetical protein COLSTE_00091 [Collinsella stercoris DSM 13279]
 gi|210160735|gb|EEA91706.1| hypothetical protein COLSTE_00091 [Collinsella stercoris DSM 13279]
          Length = 353

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 34/210 (16%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETAKD-EVR 71
           A +++ VSGG+DS  LL+   +   D + G+        +   + V+H LR  A D +  
Sbjct: 12  APVVLMVSGGADSTALLLMACTGALDIADGRGPARIARERLHVLHVNHHLRGEASDGDEA 71

Query: 72  YVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYA--------LISEHAKTINA 119
           +V ++C+R    L + H+  S+ +   Q  L AAAR+ RYA        L ++     +A
Sbjct: 72  FVRELCAREGLPLCVEHA--SFADLGGQN-LEAAARDVRYAAARRYVRELCAQTGAPRSA 128

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I+TAHT  D+ ET +M      A KG G +G+  +I    N+ I RP L     D+  
Sbjct: 129 ARILTAHTASDRAETFFM-----NAIKGSGAAGL-SSIPRRRNI-IVRPLLDMTHADLIR 181

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
           +L     SW ED SN D  +    +R FVR
Sbjct: 182 YLQVAGQSWREDESNQDTGY----LRNFVR 207


>gi|197294532|ref|YP_001799073.1| Cell cycle protein [Candidatus Phytoplasma australiense]
 gi|171853859|emb|CAM11821.1| Cell cycle protein [Candidatus Phytoplasma australiense]
          Length = 435

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++AVSGG DSM LL  L S        K K   +  +H  R  A  +   +   C + +I
Sbjct: 14  IIAVSGGVDSMVLLDFLWS-------QKYKLKVVHFNHLKRLNAIKDKNLIQSYCDQRKI 66

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                  +   PQ      AR  R   + + AK      ++TAH  DD  ET+  +  R 
Sbjct: 67  PFYYFELQ-LNPQ-NFQTEARLLRQEKLKQIAKKYQTPYVITAHHLDDLAETILQKISR- 123

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                +G SGM   + ++  +++ +PFL   + +I ++  +  I++  D +N  D ++R 
Sbjct: 124 -GSTLLGYSGMQPKLFFEEFIFL-KPFLYLAKAEIIAYAQKNKIAYLSDYTNQLDIYQRN 181

Query: 203 RVRRFV 208
           ++R  V
Sbjct: 182 QIRNHV 187


>gi|221133298|ref|ZP_03559603.1| tRNA(Ile)-lysidine synthetase [Glaciecola sp. HTCC2999]
          Length = 426

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 24/200 (12%)

Query: 22  ILVAVSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + +A+SGG DS+ LL A +     D  +     + + V+H L+  A    ++   + +R 
Sbjct: 23  VYLALSGGMDSVVLLNAVMQQWPVDAPY---PLTLLHVNHHLQADAALWAKHCQSLANRY 79

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   V+  +   P   + + AR ARY  +  +A + N  L++  H  DDQ+ET++++ +
Sbjct: 80  NIPCHVLDVQLDSPNKNIESQARHARYTALF-NAMSHNGVLLVAQHA-DDQVETLFLQLK 137

Query: 141 RDYAEKGMGLSGMCDTILYDL---------NLWISRPFLRCRREDIRSFL---LQRNISW 188
           R     G GL+G+   + +           ++ I RP L   +  I  +    L  N  W
Sbjct: 138 R-----GAGLTGLSGMVPWQSGFQQFGAHPSMHIYRPLLGVTQAQINEYASVHLSPN-DW 191

Query: 189 CEDPSNTDDRFERVRVRRFV 208
            +DPSNTD +F+R  +R  V
Sbjct: 192 VDDPSNTDTKFDRNFLRNDV 211


>gi|110003919|emb|CAK98259.1| hypothetical protein mesj of the pp-loop superfamily [Spiroplasma
           citri]
          Length = 434

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 108/244 (44%), Gaps = 16/244 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL  +++   D +     F    V++  R+ +  +   V + C +  I
Sbjct: 13  VIGVSGGPDSMFLLDNIYNSELDIN----NFIVCLVNYQKRKDSDYDEEIVVEYCQKRNI 68

Query: 83  AHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
              V     S  +          A ARE RY    + ++  +   ++ AH   D +ET  
Sbjct: 69  KICVKKVTASDYEQYQVNSHNFQAVARELRYDFFLQISEKYHCQGVLIAHNLTDHIETYI 128

Query: 137 MRSQRD--YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           ++ QR+      G+  +    + L D  L I R  L+  RE+I  +L  + I++  D +N
Sbjct: 129 LQKQRNGIVEYYGLNKTSYYYSQLLDKKLKIFRIMLKISREEIIEYLFHKQINYAIDSTN 188

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
               + R  +R  ++ I+L  + L++++    R K N  + ++   YL  +   I   S 
Sbjct: 189 ILAIYNRNIIRNEIQHINLQDMLLEIEQ----RNKENEQLKLIAKNYLIENFGQINVTSF 244

Query: 255 DILN 258
           + LN
Sbjct: 245 NALN 248


>gi|227489338|ref|ZP_03919654.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227090711|gb|EEI26023.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 270

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG DS+ L  AL +         +  +A+ +DH L    +D  R VS+  +R+ 
Sbjct: 1   MAVGLSGGPDSLALTAALVAE-------GVHVTALCIDHGL----QDGSREVSEEAARIA 49

Query: 82  ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
               A + V   N  P T   +AAR+ARY   +E    +       AHT DD  ET  + 
Sbjct: 50  RSWGAEARVIPINVDPPT--ESAARQARYRAFAEWGGPV-----CVAHTMDDLAETFLIA 102

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     GM   GM +T   +    I RP L  RR D  +   +  ++   DP N D  
Sbjct: 103 GLR-----GM-TCGMRETAEVE-GAQIIRPLLAVRRTDTVATCAEIGVTPWHDPQNADPA 155

Query: 199 FERVRVRRFV 208
           F RVRVRR V
Sbjct: 156 FTRVRVRREV 165


>gi|153213784|ref|ZP_01948992.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 1587]
 gi|124115708|gb|EAY34528.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 1587]
          Length = 440

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 11/189 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DS  +L+AL +   D  FG    +A+ V H L   A    ++    C  + 
Sbjct: 20  LLLALSGGVDSR-VLLALLARGRD-EFG-WDVAAVHVHHGLSPNADQWAQHCQRCCREVG 76

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRS 139
           +A  +   + +      +   AREARY +++ H   +NA TL++     DDQLET  +  
Sbjct: 77  MACQIEYVQLDVASGESIEKLAREARYRVLAPH---VNAQTLLLLGQHADDQLETFLLAL 133

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG+              L   RP L   R+ I ++  Q  ++W  D SN D R+
Sbjct: 134 KRGSGPKGLAAMAAYAPFAEGHLL---RPLLTVSRQHIEAYAKQHKLTWVIDESNADIRY 190

Query: 200 ERVRVRRFV 208
           ER  +R  V
Sbjct: 191 ERNFLRHQV 199


>gi|322506829|gb|ADX02283.1| ATPase [Acinetobacter baumannii 1656-2]
 gi|323516698|gb|ADX91079.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii TCDC-AB0715]
          Length = 418

 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 11/157 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L++ + +    V+   + L I + +   K       L A AR+ARY    
Sbjct: 8   KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQ--KVQIANGNLEAQARQARYQAYQ 65

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169
           +H +     +++ AH   DQ ETV +R        G G+ G+     I Y  ++ I RPF
Sbjct: 66  QHLQ--ENEILLLAHHQQDQAETVILR-----LLSGAGVDGLAAMQAIDYRKDMTIWRPF 118

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           L   RE I  +  Q  + + +DP N D  ++RV  R 
Sbjct: 119 LDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCRE 155


>gi|83816193|ref|YP_445830.1| tRNA(Ile)-lysidine synthetase [Salinibacter ruber DSM 13855]
 gi|83757587|gb|ABC45700.1| tRNA(Ile)-lysidine synthetase [Salinibacter ruber DSM 13855]
          Length = 468

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM  L  L  +        +   A+ V++ LR  A  +   V   C    
Sbjct: 24  VLVAASGGVDSMTCLSVLRRL-------DVDVHALHVNYGLRAGADGDEALVRRWCHEQS 76

Query: 82  --IAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             +  SVV+     + +     L AAAR  RY  ++  A  I A ++ T H  DDQ ET+
Sbjct: 77  PAVPLSVVALDAEARAASEDESLQAAARRLRYDALAAAAAEIGAPVVATGHHRDDQAETL 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R    +G+        +  D ++ + RP L  RR+ I ++     + W  DP+N 
Sbjct: 137 LLNLVRGSGPEGVAGMRPARPLEADPSVSLVRPLLDARRDAIEAYAESMGLPWRTDPTNQ 196

Query: 196 DDRFERVRVR 205
              ++R  +R
Sbjct: 197 RHDYDRGVIR 206


>gi|161870026|ref|YP_001599195.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442]
 gi|161595579|gb|ABX73239.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442]
          Length = 436

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  L  V + +  G +   A+ + H L   A D   +  + C  L + 
Sbjct: 26  VALSGGLDSVVLLHLL--VRAGKRAGFVP-EALHIHHGLSPRADDWADFCQNYCDMLGVG 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +     I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 139 GLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196

Query: 204 VR 205
            R
Sbjct: 197 FR 198


>gi|317153245|ref|YP_004121293.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943496|gb|ADU62547.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 336

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG+DS  LL+ LH  L+ ++ G++   A  ++H LR  A D+ R+ + +C  L 
Sbjct: 43  LAVGLSGGADSTALLLCLH-WLAVKNGGRV--VAAHLNHRLRPEADDDARWAASLCESLG 99

Query: 82  IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +      + V+   +    GL  A REARY L ++      A  I   H  DD  E + +
Sbjct: 100 VPCVAREADVAALAASRGMGLEEAGREARYTLFADVLAQHEAHFIALGHHLDDLGEDLLL 159

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A  G  LSGM   +  D    + RP L   +  +   L    +SW ED +N+D 
Sbjct: 160 RLSRGTAWPG--LSGM---VGRDDGRRLLRPLLLTPKSTLTGLLTALGVSWREDATNSDP 214

Query: 198 RFERVRVRRFV 208
           R+ R R+R  V
Sbjct: 215 RWARNRIRSTV 225


>gi|329117162|ref|ZP_08245879.1| tRNA(Ile)-lysidine synthetase [Streptococcus parauberis NCFD 2020]
 gi|326907567|gb|EGE54481.1| tRNA(Ile)-lysidine synthetase [Streptococcus parauberis NCFD 2020]
          Length = 427

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 34/193 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  LH    ++   +I  +   V+H  R  +  E  Y+        
Sbjct: 22  VLIAVSGGVDSMNLLHFLHV---NQKNLEINIAIAHVNHKQRLESDQEEAYLE------- 71

Query: 82  IAHSVVSW--KNSKP--QTGL-----MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 SW  KN+ P  QT        + AR+ RYA   +  +T N + ++TAH  DDQ+
Sbjct: 72  ------SWAKKNNIPFYQTAFSGHFSESKARDFRYAFFKKIMETENYSALVTAHHADDQV 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV+MR  R    + +     C +     +  + RPFL   + D+       +I   ED 
Sbjct: 126 ETVFMRLLRGTRLRHLSSIKECQSF---GSGQLIRPFLTIAKADL------PDIFHFEDA 176

Query: 193 SNTDDRFERVRVR 205
           SN  + + R R+R
Sbjct: 177 SNQTNDYLRNRIR 189


>gi|300859211|ref|YP_003784194.1| cell cycle protein MesJ [Corynebacterium pseudotuberculosis FRC41]
 gi|300686665|gb|ADK29587.1| cell cycle protein MesJ [Corynebacterium pseudotuberculosis FRC41]
          Length = 290

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 86/201 (42%), Gaps = 26/201 (12%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  VR+ V    ++V +SGG DS+ L+ AL +        K +  A+ VDH L+  + 
Sbjct: 12  ACRVAVRA-VTDRDVVVGLSGGPDSLALVAALVAE-------KYQVLAVCVDHDLQPGSN 63

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
               + +D   RL    +VV     +    L A AR ARY  + +  K +     +  HT
Sbjct: 64  RVAEHAADTVRRLGAQATVVRVDVDR-NGSLEANARRARYEALRKFGKPV-----VVGHT 117

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD  ET+ + +          L G    +L    +W  RPFL  RR D      +  + 
Sbjct: 118 ADDHAETLLLGA----------LRGKAAGMLVQGTVW--RPFLTVRRADTVGACEELGLE 165

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
              DP N    F RV +R+ V
Sbjct: 166 PWNDPHNNQKEFRRVAIRQQV 186


>gi|256840787|ref|ZP_05546295.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298376612|ref|ZP_06986567.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19]
 gi|256738059|gb|EEU51385.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298266490|gb|EFI08148.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19]
          Length = 438

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 152/362 (41%), Gaps = 74/362 (20%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           I ++R ++   R L     +LV +SGG+DS+ LL  L          ++ +  I++ HC 
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51

Query: 62  --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             LR  E+ +DE  +  +    L     +I    +S+   +    +  AARE RYA   E
Sbjct: 52  FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGER-HLSIEMAARELRYAWFEE 109

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             + +       AH  DD +ETV M   R     G G+ GM    +   N +I RP L  
Sbjct: 110 MRERLGGQATAVAHHRDDNVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162

Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            REDI ++L  +  ++  D +N  D     F R+ V   + +I+  A     +  + L  
Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273
               + A  I  Y+    R  + +S D L+I +        T+L+ LL+       VS  
Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276

Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332
           I       PG        LF  S         R++ DR  ++LWIT   +    T +L P
Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITSLEKKEKRTFVLDP 320

Query: 333 EE 334
           E+
Sbjct: 321 EK 322


>gi|238924073|ref|YP_002937589.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Eubacterium rectale ATCC 33656]
 gi|238875748|gb|ACR75455.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale ATCC 33656]
          Length = 247

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 19/215 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I + VSGG DS+ LL AL  +   RSF  + F   AI+VD    +    ++  V  +C  
Sbjct: 26  IAIGVSGGKDSLTLLYALSGI---RSFYPVPFELVAIAVDLGYEDF---DLSPVKALCDE 79

Query: 80  LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           L +   VV       S + SK Q    +   + R   +++ A ++    I  AH  DD +
Sbjct: 80  LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+++        +G   S    T L    L I RP +     D++ F  + N+  C++P
Sbjct: 140 ETMFLS----LLYEGQFYSFAPVTQLDGSGLAIIRPLMYVGESDVKGFKNKYNLPVCKNP 195

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              D    R  V++ VR ++L    +K + F  ++
Sbjct: 196 CPYDGHTRREYVKQLVRQLNLEIPGVKKRLFSAIQ 230


>gi|150008036|ref|YP_001302779.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503]
 gi|226695544|sp|A6LBU3|TILS_PARD8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|149936460|gb|ABR43157.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503]
          Length = 438

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 152/362 (41%), Gaps = 74/362 (20%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           I ++R ++   R L     +LV +SGG+DS+ LL  L          ++ +  I++ HC 
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVL---------VRLGYPCIAL-HCN 51

Query: 62  --LR--ETAKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             LR  E+ +DE  +  +    L     +I    +S+   +    +  AARE RYA   E
Sbjct: 52  FHLRGEESDRDEA-FACEFAESLEVPFHKIDFDTISYAGER-HLSIEMAARELRYAWFEE 109

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             + +       AH  DD +ETV M   R     G G+ GM    +   N +I RP L  
Sbjct: 110 MRERLGGQATAVAHHRDDNVETVLMNLIR-----GTGIRGMSG--IRPRNGFIVRPLLCV 162

Query: 173 RREDIRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            REDI ++L  +  ++  D +N  D     F R+ V   + +I+  A     +  + L  
Sbjct: 163 SREDILAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPLLEEINPSARNTIARSAEHL-- 220

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLR-------VSAA 273
               + A  I  Y+    R  + +S D L+I +        T+L+ LL+       VS  
Sbjct: 221 ----SAAETIYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDD 276

Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP-TLILYP 332
           I       PG        LF  S         R++ DR  ++LWIT   +    T +L P
Sbjct: 277 IFAALTKEPG-------KLFYSSTH-------RLLKDR--DYLWITSLEKKEKRTFVLDP 320

Query: 333 EE 334
           E+
Sbjct: 321 EK 322


>gi|126437726|ref|YP_001073417.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS]
 gi|126237526|gb|ABO00927.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS]
          Length = 320

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 86/203 (42%), Gaps = 20/203 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E  RF  R L       VA+SGG+DS+    AL +V +D     +  +A+ VDH L+  +
Sbjct: 13  EVARFARRHLAGTQRWCVALSGGADSL----ALTAVAAD----ILPTTALIVDHGLQPDS 64

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-ALISEHAKTINATLIMTA 125
                       RL    + V   +     G  AAAR ARY AL + H        ++  
Sbjct: 65  AAVAETARAEALRLGCPDAHVLRVDVGTSGGPEAAARTARYGALRAAH----GGAPVLLG 120

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV +   R    + +    +CD   Y       RP L  RR    +   +  
Sbjct: 121 HTLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWY-------RPLLGVRRAATAAACTELG 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           +    DP N+D R+ R R+R  V
Sbjct: 174 LHPWVDPHNSDPRYTRSRLRTEV 196


>gi|160897951|ref|YP_001563533.1| tRNA(Ile)-lysidine synthetase [Delftia acidovorans SPH-1]
 gi|160363535|gb|ABX35148.1| tRNA(Ile)-lysidine synthetase [Delftia acidovorans SPH-1]
          Length = 319

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 30/201 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG+DS  LL+A     ++R  G++   AI V H L+  A   V     VC++  
Sbjct: 14  LAVAFSGGADSTALLLAC----AERWPGQV--VAIHVHHGLQSAADAFVGQCEKVCAQHA 67

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINA-------------TLIMTAH 126
           +   +  V  +++ P      AAR+ RYA + E A+                 ++ +  H
Sbjct: 68  VPLKIRRVDARHA-PGQSPEDAARQLRYATLIEAAREPWPVQGASGDPLPPVRSMALAQH 126

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQR 184
             DDQ+ET+ +   R     G G++G+          +L   RP L    + +R +L  R
Sbjct: 127 A-DDQVETLLLALSR-----GAGVAGLAAMPAQWSRADLEWHRPLLDLPGQALRDWLAAR 180

Query: 185 NISWCEDPSNTDDRFERVRVR 205
             +W EDP+N D R+ R R+R
Sbjct: 181 GQAWVEDPTNADARYTRNRIR 201


>gi|262276510|ref|ZP_06054319.1| tRNA(Ile)-lysidine synthetase [Grimontia hollisae CIP 101886]
 gi|262220318|gb|EEY71634.1| tRNA(Ile)-lysidine synthetase [Grimontia hollisae CIP 101886]
          Length = 440

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 7/188 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I++A SGG DS  +L  L +        + ++  I + H L   A + +       +
Sbjct: 17  PRQIVLAFSGGVDSRVMLDLLATYRDIHP--QHRYLVIHIHHGLSPNADEWMMRCEAWAT 74

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
               A   +    ++ +  L  AAREARY  I  H +  N  L++T    DDQ ET  + 
Sbjct: 75  EADFAFKGIRVSLNQREGNLENAAREARYQAILNHVE--NDALVLTGQHADDQAETFLLA 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R     G+    +   + + +   + RP L   R  I  +   + +SW ED SN D R
Sbjct: 133 LKRGSGPAGLAAMPVTRPLGHAV---LCRPLLSITRAVIERYAEDQGLSWLEDESNLDCR 189

Query: 199 FERVRVRR 206
           F+R  +R+
Sbjct: 190 FDRNFIRQ 197


>gi|77164367|ref|YP_342892.1| tRNA(Ile)-lysidine synthase [Nitrosococcus oceani ATCC 19707]
 gi|254434774|ref|ZP_05048282.1| hypothetical protein NOC27_1705 [Nitrosococcus oceani AFC27]
 gi|76882681|gb|ABA57362.1| tRNA(Ile)-lysidine synthase [Nitrosococcus oceani ATCC 19707]
 gi|207091107|gb|EDZ68378.1| hypothetical protein NOC27_1705 [Nitrosococcus oceani AFC27]
          Length = 442

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL +L   LS +  G +  SAI +DH L   +++   +  + C+ L + 
Sbjct: 23  VAYSGGLDSQVLLYSLVQ-LSPKLPGSL-ISAIHIDHGLHPRSEEWSLHCRESCAALGVG 80

Query: 84  HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  V   N+ P+ G    AAAREARY  +    +      ++TA   DDQ+ET+ ++  R
Sbjct: 81  YEEVK-VNAHPRKGESPEAAAREARYGALRR--RIALGECLLTAQHQDDQVETLLLQLLR 137

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+              L   RP L   R +++ +  Q  + W EDPSN D  F+R
Sbjct: 138 GGGPAGLAAMAKAAPFGQGRLL---RPLLSFSRSELKIYAEQEGLVWVEDPSNFDLEFDR 194

Query: 202 VRVR 205
             +R
Sbjct: 195 NYLR 198


>gi|261377822|ref|ZP_05982395.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685]
 gi|269146124|gb|EEZ72542.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685]
          Length = 457

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+   + LH ++     G     A+ + H L   A     +  + C  L 
Sbjct: 45  IAVALSGGLDSV---VLLHLLVCAGKKGGFIPEALHIHHGLSPHADSWADFCRNYCDTLG 101

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +    V     K   G+ AAAR+ RYA+ SE    I    +  AH  DDQ+ET  +   R
Sbjct: 102 VRLETVRVSVEKNGLGIEAAARQKRYAVFSEKEFDI----LALAHHRDDQIETFMLAVAR 157

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LS M           I RP L   R++++ +  +  +S  ED SNTD  + R
Sbjct: 158 GGGLR--ALSSMPSVRPLGTRGIIWRPLLPFSRQELQDYAERHGLSNIEDESNTDTGYLR 215


>gi|329939449|ref|ZP_08288785.1| tRNA(Ile)-lysidine synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301678|gb|EGG45572.1| tRNA(Ile)-lysidine synthetase [Streptomyces griseoaurantiacus M045]
          Length = 392

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 85/191 (44%), Gaps = 21/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G I+   ++VDH L +   D+     +V  RLR
Sbjct: 93  VLVACSGGADSMALASAL--AFEAPRLG-IRAGGVTVDHGL-QAGSDQ--RAEEVAERLR 146

Query: 82  I--AHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
               H V S      ++  P+     A   A  A    H     AT ++  HT DDQ ET
Sbjct: 147 ALGLHPVESIAVSVGRDGGPEAAARDARYAALDAAADRH----GATAVLLGHTRDDQAET 202

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   LSGM    +        RPFLR  R+  R+  + +++   +DP N
Sbjct: 203 VLLGLARGSGIR--SLSGMA--AVSGAAGRYRRPFLRLDRQTARTACMAQSLPVWDDPHN 258

Query: 195 TDDRFERVRVR 205
            D  + R R+R
Sbjct: 259 ADPAYTRSRLR 269


>gi|224539103|ref|ZP_03679642.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519267|gb|EEF88372.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 436

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 31/209 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---L 62
           I+  + F R       ILV +SGG+DS+ LL  L ++                 HC   L
Sbjct: 10  IDQEKLFTRE----DKILVTLSGGADSVALLRLLLAM----------GYTCEAAHCNFHL 55

Query: 63  R--ETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           R  E+ +DE+ +V ++C +L +     H   + +  K    +  AARE RYA   +    
Sbjct: 56  RGDESVRDEM-FVRELCLQLEVPLHVQHFQTTEEAEKRHISIEMAARELRYAWFEQLRLQ 114

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A +I  AH  DD +ET+ +   R     G G++G+      + N  I RP L   R++
Sbjct: 115 QGANVIAVAHHKDDSVETLLLNLIR-----GTGINGLLGIRPKNGN--IVRPLLCLDRKE 167

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           I  +L +   S+  D +N  D + R ++R
Sbjct: 168 ITEYLQEIGQSYVTDSTNLQDEYTRNKIR 196


>gi|302530792|ref|ZP_07283134.1| predicted protein [Streptomyces sp. AA4]
 gi|302439687|gb|EFL11503.1| predicted protein [Streptomyces sp. AA4]
          Length = 348

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 11/198 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR F+ ++  P  + VAVSGG+DS+ L  A   VL  R    ++  A+ VDH L+  + 
Sbjct: 35  AVRDFLATVAVPGEVCVAVSGGADSLALAEATAYVLRHRD---VRTRALVVDHGLQADSA 91

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                 + V   L +    V   +   + G  AAAR ARY  + E A      L++  HT
Sbjct: 92  AVASEAATVVKGLGVDAVEVHAVHVVGKGGPEAAARAARYHALRE-ALPNGEGLVLLGHT 150

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R     G G   +     +D   W  RP L   R    +   +  + 
Sbjct: 151 QDDQAETVLLGLGR-----GSGPRSLAGMRPHD-PPW-GRPLLGITRAQTVAACTELGLE 203

Query: 188 WCEDPSNTDDRFERVRVR 205
             +DP N D RF RVR+R
Sbjct: 204 PWQDPHNADPRFTRVRLR 221


>gi|149236285|ref|XP_001524020.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452396|gb|EDK46652.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 523

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 17/207 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + + +SGG DSM L   L +        ++K  AI++DH  R  +K E + ++   +
Sbjct: 23  PTKVGIGLSGGPDSMLLSWLLKTTNEQLMNNRLKIHAITIDHSFRAGSKVEAQKLTPTMN 82

Query: 79  RLRIAHSVVS--WKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I HS+ S  + ++ P+  T     AR  R+  +++         +   H  DDQ+ET
Sbjct: 83  NWGIKHSIKSLDYGDADPKLFTNFEEIARIKRFEALNDLCCEQRIPFLFLGHHKDDQVET 142

Query: 135 VYMRSQRDYAEKGMGLSGMCDTI----------LYDLNLWISRPFLRCRREDIRSFLLQR 184
              R Q + +  G+  +     +            D  +++ RP L   ++DI       
Sbjct: 143 FVQRLQGNSSIYGLAGTRQVSPLPSSRDLPPLETKDGQVFLVRPLLDFYKDDIVKTCELH 202

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI 211
           NI +  DP+N + +  R   R F+R +
Sbjct: 203 NIPYVIDPTNKNPKLTR---RNFLRQV 226


>gi|257057522|ref|YP_003135354.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017]
 gi|256587394|gb|ACU98527.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017]
          Length = 324

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 95/208 (45%), Gaps = 17/208 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +FLS  E     V + +    + VAVSGG+DS+ L  A   V   R    +   A+ VDH
Sbjct: 10  LFLSEPE-----VSAWLGSGQVFVAVSGGADSLALAEAAAHVGRRRG---LTVGALVVDH 61

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L+  + +   + +    RL +  + V         G  AAAR ARYA + EHA   +  
Sbjct: 62  GLQAGSAEVAEWAAQTALRLGVDTAKVLPVTVSGGGGPEAAARRARYAALREHAG--DDA 119

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           L++  HT DDQ ETV +   R    +   L+GM       L+    RP L   R    + 
Sbjct: 120 LVLFGHTRDDQAETVLLGLGRGSGPRS--LAGM-----RPLDPPWGRPLLDVPRSVTAAA 172

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +S   DP NTD RF RVRVR  V
Sbjct: 173 CEELGVSPWHDPHNTDPRFRRVRVRHEV 200


>gi|254825867|ref|ZP_05230868.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
           J1-194]
 gi|255521743|ref|ZP_05388980.1| hypothetical protein LmonocFSL_11047 [Listeria monocytogenes FSL
           J1-175]
 gi|293595106|gb|EFG02867.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
           J1-194]
          Length = 648

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 80/188 (42%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A +    V   C    
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHINHHLRENAANGQNVVEAFCESQG 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    V  +    Q G+   AR  RY    +         +  AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R  A   +G SG+           I RPFL   + +I  +  +  +++  D SNT  
Sbjct: 141 RLVRGSA--SIGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDESNTSQ 197

Query: 198 RFERVRVR 205
            + R R R
Sbjct: 198 EYTRNRYR 205


>gi|325955276|ref|YP_004238936.1| tRNA(Ile)-lysidine synthase [Weeksella virosa DSM 16922]
 gi|323437894|gb|ADX68358.1| tRNA(Ile)-lysidine synthase [Weeksella virosa DSM 16922]
          Length = 431

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 38/229 (16%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSD 75
           A  L+ +SGG DSM L            F ++ ++  SV HC   LR    D + + V D
Sbjct: 19  AKFLLTISGGVDSMVLF---------HIFRQLSYT-FSVAHCNFQLRGNDSDLDEKLVVD 68

Query: 76  VCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            C++ +I   V  +   + Q+     +  A R  RY   ++   T     ++ AH  +DQ
Sbjct: 69  TCTKNKIPFFVEKFDVKEYQSTGNYSIEMACRNLRYEWFNKLLITHKFDYLVMAHHLNDQ 128

Query: 132 LETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+ +   R    KG M +  + + I         RP L   +++I  + +Q  I W E
Sbjct: 129 LETLLINLSRGSGSKGLMAMEEISNKIF--------RPLLTFSKKEIVDYAMQEKIIWRE 180

Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAVAML 237
           D +N ++ F R ++R  +  +  ++H  +LK          VN ++A+L
Sbjct: 181 DLTNQENDFIRNQIRNQITPLLEEIHPQFLK---------NVNKSLAIL 220


>gi|171058356|ref|YP_001790705.1| tRNA(Ile)-lysidine synthetase [Leptothrix cholodnii SP-6]
 gi|170775801|gb|ACB33940.1| tRNA(Ile)-lysidine synthetase [Leptothrix cholodnii SP-6]
          Length = 457

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 15/191 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA SGG DS  LL A  +  + R    +   A+ V H L   A D + +    C  L 
Sbjct: 15  IAVAYSGGRDSSALLHATVACAAAR----VDVHALHVQHGLSAFAPDWLAHCERRCRALS 70

Query: 82  IAHSVVSWKNSK-----PQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +  + + W +++     P  G  + A AR  RY  ++  A+      ++ AH  DDQ+ET
Sbjct: 71  LQGARL-WLHTRSLALQPARGESIEALARRERYRALASMAREAGCDTVLLAHHRDDQVET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +++ R       GLS M  +I +   L  +RP+L   R  I+S++    + + ED SN
Sbjct: 130 FLLQALR--GAGAAGLSAM-PSIAWREGLTWARPWLDRPRSAIQSYVDAHALEFVEDDSN 186

Query: 195 TDDRFERVRVR 205
              R  R R+R
Sbjct: 187 ASPRHARNRLR 197


>gi|225849409|ref|YP_002729573.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643627|gb|ACN98677.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 454

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 17/197 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRY 72
           SL+ P   IL+A SGG DS+ L   L      +++ KI K S   ++H LRE +  +  +
Sbjct: 14  SLIQPKDKILIAFSGGPDSVVLSFLLKKF---QAYFKIEKISLAHLNHSLREESDKDEEF 70

Query: 73  VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             D   +  I   V    V     K +  +  A RE RY    E  +  N   + TAH  
Sbjct: 71  CKDFGQKYDIPVFVKKVDVKSVAKKEKKSIEEAGREERYKFFKEIMEKENFNKLATAHHL 130

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D +ET+++   +   +   G     + I+        RP    ++E++  +  + ++S+
Sbjct: 131 SDLIETMFLWFVQGNKKGLKGFKPNEENII--------RPLYYIKKEELLEYCHKNDLSY 182

Query: 189 CEDPSNTDDRFERVRVR 205
             D SN D R+ R +VR
Sbjct: 183 VIDKSNFDKRYLRNKVR 199


>gi|222152214|ref|YP_002561389.1| PP-loop family protein [Streptococcus uberis 0140J]
 gi|222113025|emb|CAR40337.1| PP-loop family protein [Streptococcus uberis 0140J]
          Length = 427

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 17/192 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  LH  +    F +I    + V+H  R+ ++ E  Y+ +   +  
Sbjct: 23  VLIAVSGGVDSMNLLHFLH--IYQEKF-EILIGIVHVNHKQRQESEIEESYLIEWAKKHN 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I     S+K    +    A AR  RY    +  +    T ++TAH  DDQ ET+ MR  R
Sbjct: 80  IPIYTSSFKGKFTE----AKARTFRYDFFKKIMQEEGYTALVTAHHADDQAETILMRIFR 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSG+ +   +     I RPFL  ++          NI   ED SN ++ + R
Sbjct: 136 --GSRLKYLSGIKEIQSFGTGELI-RPFLGIQKSQF------PNIFHFEDQSNFENYYFR 186

Query: 202 VRVR-RFVRDID 212
            R+R  ++++I+
Sbjct: 187 NRIRNHYMKEIE 198


>gi|304440185|ref|ZP_07400075.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371234|gb|EFM24850.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 434

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 29/197 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           ILV +SGG+DS+ LL AL  +  D +   +  S   ++H +RETA  +  +V ++C +  
Sbjct: 21  ILVGLSGGADSVYLLRALLYIKDDYN---LYISCAHINHGIRETALRDEDFVKNLCDKFD 77

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I H  ++   +K +     A R+ARY          N   I  AH  DD  ETV  
Sbjct: 78  VPLYINHINMNELAAKYKITSEEAGRKARYDFFDSIE---NIDKIALAHNLDDNAETVLF 134

Query: 138 RSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           R  R     G GL G+       D I+        RP L   R  I + L      +  D
Sbjct: 135 RIIR-----GTGLQGLTGIPISRDKII--------RPILNTNRLTIENELKSMGQEYMID 181

Query: 192 PSNTDDRFERVRVRRFV 208
            +N  + + R ++R  +
Sbjct: 182 ETNLSNDYTRNKIRNLL 198


>gi|289208652|ref|YP_003460718.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. K90mix]
 gi|288944283|gb|ADC71982.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. K90mix]
          Length = 418

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 109/243 (44%), Gaps = 20/243 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +VR F++       + VA SGG DS    + LH++   R  G     A  V+H LR  
Sbjct: 9   MAAVRAFLQDHPGATSLRVAFSGGRDSS---VLLHALAQLRPQG---LEAWHVNHGLRPD 62

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATL 121
           A+ +  +   V   L +  +V   +N         G  AAAR ARY  + E     +  L
Sbjct: 63  AEAQAAFCVRVAEALEVPLTV---RNVIVLDDASEGPEAAARRARYTALREGLGERD--L 117

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+TA   DDQ ET  + + R    +G  L GM   +  + + W+ RP L    E I  + 
Sbjct: 118 ILTAQHADDQAETFLLAALRGSGPEG--LQGM-RVLRREGDTWLGRPLLAVPGESIAGYA 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVRR--FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
               + W  DPSN D RF+R  +RR  F R  +   +Y  + +    + +  + +A L  
Sbjct: 175 RVAALDWYHDPSNDDTRFDRNFLRREIFPRLAERFPVYGSLARCARWQREAVDRLASLED 234

Query: 240 KYL 242
           K+L
Sbjct: 235 KHL 237


>gi|302206900|gb|ADL11242.1| tRNA(Ile)-lysidine synthase MesJ [Corynebacterium
           pseudotuberculosis C231]
 gi|302331467|gb|ADL21661.1| tRNA(Ile)-lysidine synthetase [Corynebacterium pseudotuberculosis
           1002]
 gi|308277154|gb|ADO27053.1| tRNA(Ile)-lysidine synthetase [Corynebacterium pseudotuberculosis
           I19]
          Length = 280

 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 26/201 (12%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  VR+ V    ++V +SGG DS+ L+ AL +        K +  A+ VDH L+  + 
Sbjct: 2   ACRVAVRA-VTDRDVVVGLSGGPDSLALVAALVAE-------KYQVLAVCVDHDLQPGSN 53

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
               + +D   RL    +VV     +  + L A AR ARY  + +  K +     +  HT
Sbjct: 54  RVAEHAADTVRRLGAQATVVRVDVDRNGS-LEANARRARYEALRKFGKPV-----VVGHT 107

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD  ET+ + +          L G    +L    +W  RPFL  RR D      +  + 
Sbjct: 108 ADDHAETLLLGA----------LRGKAAGMLVQGTVW--RPFLTVRRADTVGACEELGLE 155

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
              DP N    F RV +R+ V
Sbjct: 156 PWNDPHNNQKEFRRVAIRQQV 176


>gi|256028355|ref|ZP_05442189.1| cell cycle protein MesJ [Fusobacterium sp. D11]
 gi|289766281|ref|ZP_06525659.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. D11]
 gi|289717836|gb|EFD81848.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. D11]
          Length = 448

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 19/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDE---VRYVSDV 76
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR  +   DE     Y    
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---QNFINFKIYLVHINHLLRGKDAVSDENFSFEYAKK- 78

Query: 77  CSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            + L I    +  K    + G  L    RE RY   S+  K + A  I TAH  DDQ+ET
Sbjct: 79  -NNLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSKIYKKVGANKIATAHNKDDQIET 137

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
              R  R     G  L G+    + + N  I RP     ++DI  +L +  I +  D +N
Sbjct: 138 FLFRLIR-----GASLQGLEGIKIKNNN--IIRPISEIYKKDILDYLNKNEIQYKIDKTN 190

Query: 195 TDDRFERVRVR 205
            ++ F R  +R
Sbjct: 191 FENEFTRNSIR 201


>gi|90413546|ref|ZP_01221537.1| hypothetical cell cycle protein MesJ [Photobacterium profundum
           3TCK]
 gi|90325478|gb|EAS41961.1| hypothetical cell cycle protein MesJ [Photobacterium profundum
           3TCK]
          Length = 439

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 15/238 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV----RYVSDVCS 78
           ++A+SGG DS  LL  +   + D    + +  A+ V H L   A        ++  D   
Sbjct: 21  VIALSGGLDSRVLLHLMGRFIRDNP--QYQCDAVHVHHGLSNNADKWALQCQQWAFDEQI 78

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              I H  +   N   +  +   ARE RY  +S+H +  +   ++TA   DDQLET  + 
Sbjct: 79  TCHIEHVTLVLGN---RISVEQQAREQRYLALSKHIQQDDC--LLTAQHADDQLETFLLA 133

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R       GL+ M ++  + +   + RP L+  R+ I  + +   + W ED SN D R
Sbjct: 134 LKR--GSGPAGLASMPESTTFGIGYHL-RPLLQVIRQSITDYGITHQLEWVEDESNQDQR 190

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           ++R  +R  +  + LH  +  ++K       +      L+ + L  H+   + + Q +
Sbjct: 191 YDRNFLRHQITPL-LHQRWPGIRKAVSRSAALCGEQEALLNELLASHLLKALHVDQSL 247


>gi|262341192|ref|YP_003284047.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272529|gb|ACY40437.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 456

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 35/212 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSM---GLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           IE +R   +       I VAVSGG DSM    LL+ L ++             + V HC 
Sbjct: 7   IEKIR---KYFSLKNKICVAVSGGLDSMVLVNLLLDLSNI------------ELEVAHCN 51

Query: 62  --LR--ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEH 113
             LR  E+ +DEV ++ + C++  I   V  +     + K +  +  AAR+ RY    E 
Sbjct: 52  FTLRNQESDEDEV-FIKNFCTKKNIICHVKRFDTLNFSKKNKLSIQMAARKLRYDWFFEL 110

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K I+   I+  H  +D +ET ++   R     G G+ G+    +   N    RP     
Sbjct: 111 LKKIDYDYIVLGHHLNDSIETFFLNILR-----GTGIKGLLG--IPKKNGKFIRPLSDFT 163

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           +E+I  +   +NI W  D SN + ++ R ++R
Sbjct: 164 KEEILHYAKIKNIKWRLDSSNLETKYLRNKIR 195


>gi|146310390|ref|YP_001175464.1| tRNA(Ile)-lysidine synthetase [Enterobacter sp. 638]
 gi|254789036|sp|A4W6T3|TILS_ENT38 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|145317266|gb|ABP59413.1| tRNA(Ile)-lysidine synthetase [Enterobacter sp. 638]
          Length = 426

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 10/187 (5%)

Query: 17  VYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           V+P   +LV  SGG DS  LL  L  +L       ++  AI V H L   A   V +   
Sbjct: 10  VFPYRQLLVGFSGGLDSTVLLHRL--MLWREQEPDVQIRAIHVHHGLSSNADHWVAHCES 67

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLET 134
           +C    I   V   K      G  A AR+ARY       KT+ A   ++TA   DDQ ET
Sbjct: 68  LCKSWHIPLIVERVKLRDEGLGTEAQARKARYLAFE---KTLQAGEALVTAQHLDDQCET 124

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R     G  LS M     +  +  I RP L   R  +  +    N+ W +D SN
Sbjct: 125 FLLALKRGSGPAG--LSAMPVRTEFAGSQLI-RPLLGETRTSLEKWAQDYNLCWIDDESN 181

Query: 195 TDDRFER 201
            DDR++R
Sbjct: 182 QDDRYDR 188


>gi|54310067|ref|YP_131087.1| cell cycle protein MesJ [Photobacterium profundum SS9]
 gi|61216518|sp|Q6LN41|TILS_PHOPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|46914506|emb|CAG21285.1| hypothetical cell cycle protein MesJ [Photobacterium profundum SS9]
          Length = 435

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 15/238 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR----ETAKDEVRYVSDVCS 78
           ++A+SGG DS  LL  +   + +    + +  A+ V H L     + A+  +++  +   
Sbjct: 21  VIALSGGLDSRVLLHLMGRFIQENP--QYQCDAVHVHHGLSVNADKWAQQCLQWAFEEKI 78

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              I H  +   N   +  +   ARE RY  +S+H +      ++TA   DDQLET  + 
Sbjct: 79  TCHIEHVTLVLGN---RISVEQQAREQRYLALSKHVQ--QGDCLLTAQHADDQLETFLLA 133

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R       GL+ M ++  + ++  + RP L+  R+ I  + +   + W ED SN D R
Sbjct: 134 LKR--GSGPAGLASMPESTTFGISYHL-RPLLQVTRQSITDYGIAHQLEWVEDESNQDQR 190

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           ++R  +R  +  + LH  +  ++K       +      L+ + L  H+   + + Q +
Sbjct: 191 YDRNFLRHQITPL-LHQRWPGIRKAVSRSAALCGEQEALLNELLASHLSKALHVDQSL 247


>gi|298488349|ref|ZP_07006381.1| tRNA(Ile)-lysidine synthetase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157171|gb|EFH98259.1| tRNA(Ile)-lysidine synthetase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 445

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             AI V H L+  A     +   VC  L +A  +V   +  P   +  AAR+ARY   ++
Sbjct: 57  LHAIHVHHGLQAAANAWPEHCRRVCQALGVAFELVR-VHVDPGASIEQAARQARYTAFTD 115

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLR 171
             +     +++T    DDQ ET+  R  R    +G+  + G    IL   +L   RP L 
Sbjct: 116 --RLAEGDVLLTGQHRDDQAETLLFRLLRGAGVRGLAAMPGQ--RILGRGHL--VRPLLA 169

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             R ++  +  Q  + W EDPSN D RF R  +R  V
Sbjct: 170 VSRVELEGYAHQHGLHWVEDPSNDDSRFSRNFLRSDV 206


>gi|262374325|ref|ZP_06067601.1| tRNA(Ile)-lysidine synthetase [Acinetobacter junii SH205]
 gi|262310883|gb|EEY91971.1| tRNA(Ile)-lysidine synthetase [Acinetobacter junii SH205]
          Length = 463

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 17/189 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+  SGG DSM LL  +  +   ++       +I +DH L+ ++ +    V     +
Sbjct: 31  TQFLIGCSGGMDSMLLLYLMSEIFPSQT------RSIYIDHQLQSSSTEWGCLVQKQSEQ 84

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L I    V  K       L   AR ARY    +H K+    +++ AH   DQ ET+ +R 
Sbjct: 85  LNIP--CVIQKVHVDAGNLEQQARHARYQAYIKHLKS--HEILVLAHHQQDQAETLLLR- 139

Query: 140 QRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                  G G++G+     YD+  +L I RPFL   R+ I  +  Q    +  DP+N D 
Sbjct: 140 ----LFSGAGVNGLSAMQAYDVRKDLTIWRPFLELSRQQIEEWAKQIGFDYVVDPTNHDT 195

Query: 198 RFERVRVRR 206
            ++R   R 
Sbjct: 196 HYDRAWCRE 204


>gi|257455699|ref|ZP_05620928.1| tRNA-Xxx [Enhydrobacter aerosaccus SK60]
 gi|257446982|gb|EEV21996.1| tRNA-Xxx [Enhydrobacter aerosaccus SK60]
          Length = 485

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 41/212 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG DSM LL A   +       ++    I ++H L++ + D  + V   C +  
Sbjct: 31  IYIACSGGRDSMALLFACQQL-------QLPIHVIHINHKLQKISDDWQQLVEGYCHKHH 83

Query: 82  IAHSVV--SWKNSK-----------PQTGLMAA----AREARYALISEHAKTINATLIMT 124
           I +  V   W++ +            Q G        AR ARY  I + A   NA ++  
Sbjct: 84  IDYDSVCIDWQSQQVYGADSTISQEQQVGTQQVNEQQARTARYHAIMQIAGE-NA-IVAL 141

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIR 178
           AH  +DQ+ET+ +        +G GL+G+     + +       +W+ RP L   R++I 
Sbjct: 142 AHHANDQVETLLIN-----VCQGTGLAGLTGMTAFGVQHEFGKPIWLWRPLLGVTRDEIS 196

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
            F+  + I + +DP+N    F     R F+R+
Sbjct: 197 DFVAAQPIPYVDDPTN----FGVANQRAFLRN 224


>gi|313899743|ref|ZP_07833246.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. HGF2]
 gi|312955358|gb|EFR37023.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. HGF2]
          Length = 406

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 14/189 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL     +     F   +     +++  R+TA  ++  V   C+R  I
Sbjct: 13  IIGVSGGPDSMALL----DMCRKEGF---QLVVAHMNYKKRDTADRDMELVRSYCARFHI 65

Query: 83  AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
                +   +KP  G   A ARE RY +  E  +   A  ++ AH  DD LET  M  +R
Sbjct: 66  PFE--ARLQTKPCVGNFQAFAREERYRMYRELLQKYQAAAVLLAHHLDDHLETYLMAKER 123

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              ++ +G+          +   I RP +   + ++ ++  +  + +  D SN  D + R
Sbjct: 124 GSMKEYLGIQEEACI----MGCTIIRPLMAYSKRELEAYCRENAVPFGIDESNLTDHYAR 179

Query: 202 VRVRRFVRD 210
            R+R  + D
Sbjct: 180 NRIRHEIVD 188


>gi|319787808|ref|YP_004147283.1| tRNA(Ile)-lysidine synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466320|gb|ADV28052.1| tRNA(Ile)-lysidine synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 443

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS  LL AL +  + R+ G     A+ V H L   A D   +     +   
Sbjct: 18  LVVGFSGGLDSSALLHALAAEPAIRARG---LRAVHVHHGLHADAGDWAAHCLRQAAAWG 74

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRS 139
           +   V+  +  +    GL  AAREARYA +     T+    +++TAH  DDQ ET  +R+
Sbjct: 75  VPLQVIEVQVPADAGLGLEGAAREARYAAL---LSTLGPGEVLVTAHHLDDQAETFLLRA 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN----T 195
            R    +G+   G    +      W  RP L   R  +        ++W +DPSN     
Sbjct: 132 LRASGPEGL---GAMRPLRRFGGGWHWRPLLGLSRAVLEDHARAHGLAWVDDPSNALADA 188

Query: 196 DDRFERVRV 204
           D  F R+ V
Sbjct: 189 DRNFLRLEV 197


>gi|108805006|ref|YP_644943.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766249|gb|ABG05131.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 444

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 19/201 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           +E+VR +   L  P   L  VSGG DS+ LL AL  +         + + + VDH LR E
Sbjct: 11  LETVRRYGMDLSRP---LALVSGGPDSVALLRALVGL-------GYEPAVLHVDHGLRGE 60

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            ++ +  +V ++C  L +   V S +    + GL   AR  RY +  E A  + A+ +  
Sbjct: 61  ESRGDAEFVRELCRGLGLRCEVRSLRLEG-RAGLQERARRERYRIAGEVAGRLGASAVAV 119

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ET+ +   R     G GL G+    +  +   + RP +   R +I  +L   
Sbjct: 120 GHNADDVAETLLLNLAR-----GSGLRGLSG--IPPVRGRVCRPLIERTRAEILGYLEAL 172

Query: 185 NISWCEDPSNTDDRFERVRVR 205
              +  D +N   ++ R RVR
Sbjct: 173 GQGYRVDSTNLLPKYARNRVR 193


>gi|168180996|ref|ZP_02615660.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum NCTC 2916]
 gi|182668056|gb|EDT80035.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum NCTC 2916]
          Length = 468

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77
           I+V VSGG DSM LL  L  + +      I  + I+  H +R  E+  DE +YV + C  
Sbjct: 21  IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77

Query: 78  SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ ETV
Sbjct: 78  NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +N 
Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYKLNPRIDKTNL 191

Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247
              + R ++R     +++D     +   + +F ++  K NN +  +      +Y T  ++
Sbjct: 192 QSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251

Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
                                 +I+ I+Q++ N++   ++ +L +S    G  ++LP   
Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNTTGKFVNLPSNI 311

Query: 286 SMERV 290
             E +
Sbjct: 312 KAENI 316


>gi|223038944|ref|ZP_03609236.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           rectus RM3267]
 gi|222879917|gb|EEF15006.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           rectus RM3267]
          Length = 332

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 18/186 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S G DS  L   L           +KF    VD+ +R  +KDE+     +   L+ 
Sbjct: 20  LLAFSHGVDSTALFYLLDEA-------GVKFDLAIVDYNVRAQSKDEITSARQLA--LKF 70

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +         +     AR ARY   SE  +      ++ AH FDD+ E   M+  R 
Sbjct: 71  NKQIYVKSVCLGASNFEHEARAARYEFFSEICREHGYENLILAHQFDDKFEWFLMQLGR- 129

Query: 143 YAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               G GLS   GM +    + +  I+RP L  R+ ++  FL +RN+ +  D +N  +RF
Sbjct: 130 ----GAGLSELLGMQELEARE-DYVIARPLLGVRKCELERFLRERNLKYFTDETNLTERF 184

Query: 200 ERVRVR 205
           +R  +R
Sbjct: 185 KRGFIR 190


>gi|189467232|ref|ZP_03016017.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM
           17393]
 gi|189435496|gb|EDV04481.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM
           17393]
          Length = 443

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 31/209 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---L 62
           I+  + F R       ILV +SGG+DS+ LL     +L D  +           HC   L
Sbjct: 10  IDQEKLFTRE----DKILVTLSGGADSVALL----RLLLDMGY------TCEAAHCNFHL 55

Query: 63  R--ETAKDEVRYVSDVCSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           R  E+ +DE+ +V ++C +L     + H     +  K    +  AARE RYA   +    
Sbjct: 56  RGDESVRDEM-FVRELCLQLVVPLHVQHFQTMEEAEKRHISIEMAARELRYAWFEQLRLQ 114

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A +I  AH  DD +ET+ +   R     G G++G+      + N  I RP L   R++
Sbjct: 115 QGADVIAVAHHKDDSVETLLLNLIR-----GTGINGLLGIRPKNGN--IVRPLLCLDRKE 167

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           I  +L +   S+  D +N  D + R ++R
Sbjct: 168 ITEYLQEIGQSYVTDSTNLQDEYTRNKIR 196


>gi|331007449|ref|ZP_08330624.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC1989]
 gi|330418742|gb|EGG93233.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC1989]
          Length = 483

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 13/197 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-----AISVDHCLRETAKDEVR 71
           V+   +++A SGG DS    + LH+V+     G I FS     A+ V+H L + A    +
Sbjct: 34  VHVKRLVIAYSGGVDST---VLLHAVVEAAKQGLIPFSLSSIVAVHVNHQLSDQADCWQQ 90

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +       L IA    + +      G+ AAAR+ARY++     +  +  L+   H   DQ
Sbjct: 91  HCQQSAESLGIACFSEAVRVESTGKGVEAAARDARYSVFEGFLQPGDCLLL--GHHQGDQ 148

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +R  R    KG+    +   +     L   RP L   +  I+++  Q  ++W ED
Sbjct: 149 AETVLLRLFRGAGVKGLTAMPVSRAMGKASLL---RPLLAVNQAAIQAYARQHQLTWVED 205

Query: 192 PSNTDDRFERVRVRRFV 208
            SN  D ++R  +R  V
Sbjct: 206 ESNQSDHYDRNFLRNKV 222


>gi|291524808|emb|CBK90395.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale DSM 17629]
          Length = 247

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 19/215 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I + VSGG DS+ LL AL  +   RSF  + F   AI+VD    +    ++  V  +C  
Sbjct: 26  IAIGVSGGKDSLTLLYALSGI---RSFYPVPFELVAIAVDLGYEDF---DLEPVKALCDE 79

Query: 80  LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           L +   VV       S + SK Q    +   + R   +++ A ++    I  AH  DD +
Sbjct: 80  LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+++        +G   S    T L    L I RP +     D++ F  + N+  C++P
Sbjct: 140 ETMFLS----LLYEGQFYSFAPVTQLDGSGLAIIRPLMYVGESDVKGFKNKYNLPVCKNP 195

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              D    R  V++ VR +++    +K + F  ++
Sbjct: 196 CPYDGHTRREYVKQLVRQLNMENPGVKKRLFSAIQ 230


>gi|203284682|ref|YP_002222422.1| cell cycle protein [Borrelia duttonii Ly]
 gi|201084125|gb|ACH93716.1| cell cycle protein [Borrelia duttonii Ly]
          Length = 439

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 21/203 (10%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-- 68
           F+ R+L+    ++VA SGG DS  LL+ L   L+          A    H +R  ++   
Sbjct: 14  FYKRNLLTKEKVIVAFSGGPDSTVLLLNLKKYLN------NNIVAFYFAHYIRSKSEQDL 67

Query: 69  EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAA--AREARYALISEHAKTINATLI 122
           E+ +V   C+   I   +    V  K    Q G+     AR+ RY  + E     NA+ +
Sbjct: 68  EIEHVKKFCNLYDIVCQIKKCDVDIKIKAKQLGISIEELARKYRYNALLEALNENNASYV 127

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AH  +DQ ET+ MR       +G  L G     +  +N +I RP L   RE+I  FL 
Sbjct: 128 ALAHNKNDQFETLIMR-----FFQGSFLDGFVGIPV--INNFIIRPLLEVSREEIEKFLS 180

Query: 183 QRNISWCEDPSNTDDRFERVRVR 205
             NI +  D +N +D + R +VR
Sbjct: 181 VNNIVYSIDSTNHEDLYLRNKVR 203


>gi|187928104|ref|YP_001898591.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12J]
 gi|187724994|gb|ACD26159.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12J]
          Length = 472

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 19/211 (9%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDE 69
           F V   +    + +A+SGG DS  L   LH+  + R  G +++  A+ + H L+  A   
Sbjct: 30  FVVSGEIETPTVAIALSGGRDSAAL---LHACAAWRDAGARVQLVALHIHHGLQADAD-- 84

Query: 70  VRYVSDVCSRLRIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                  C R+  A     H+   +       G+  AAREARYA +        A++++T
Sbjct: 85  --VWECACQRMAQAAGVAFHARRVYVEIDAGQGVEEAAREARYAALEALCAQTGASILLT 142

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQ 183
           AH  DDQ ETV ++  R     G GL G+    +     + + RP++   R +I  +   
Sbjct: 143 AHHQDDQAETVLLQLMR-----GAGLDGLAAMPMARAGAVTLLRPWVDAPRSEIELYAHA 197

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
             + W EDPSNTD R+ R  +R  +  +  H
Sbjct: 198 HALCWVEDPSNTDARYARNALRPLLAGMADH 228


>gi|110834021|ref|YP_692880.1| cell cycle protein MesJ [Alcanivorax borkumensis SK2]
 gi|110647132|emb|CAL16608.1| cell cycle protein MesJ, putative [Alcanivorax borkumensis SK2]
          Length = 433

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 5/157 (3%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           +  A+ +DH L+  ++   R+   +  +  IA ++     S  + GL A AR+ARY ++ 
Sbjct: 45  RLCAVHIDHQLQADSRAWSRFCGALADKYDIALTIEPVTVSMAE-GLEAGARDARYQVLL 103

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A+   ATL++ AH  +DQ ETV  R  R    +G+   G   +    + LW  RP L 
Sbjct: 104 PLARAKGATLVL-AHHRNDQAETVLFRLLRGAGVQGLSAMGQ-HSQQQGVTLW--RPLLG 159

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +  +  + +++W EDPSN D    R  +R  +
Sbjct: 160 LGQHVLEKWGAELSLNWLEDPSNQDQSLRRNYLRHTI 196


>gi|256374465|ref|YP_003098125.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827]
 gi|255918768|gb|ACU34279.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827]
          Length = 308

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 23/208 (11%)

Query: 4   SPIESVRFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            P+  VR  VR  +    PA + VAVSGG+DS+ L     ++ S          A+ VDH
Sbjct: 7   GPLSRVRTAVRRFLAEHRPARVAVAVSGGADSLALAACTAALTS-------GARAVVVDH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L+E + +     +  C+ L +   V   + +           EA        A      
Sbjct: 60  GLQEGSAEVAERAARTCAELGLDAQVRRVEVTG------GGGPEAAARRARYAALRPERG 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           L++  HT DDQ ETV +   R    +   ++GM      +L+    RP L   R D    
Sbjct: 114 LVLLGHTLDDQAETVLLGLGRGSGPRS--IAGM-----RELDAPWGRPLLGVSRADTEGA 166

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +S   DP N D  F RVR+RR V
Sbjct: 167 CAELGLSPWSDPHNADPAFTRVRLRREV 194


>gi|50955662|ref|YP_062950.1| hypothetical protein Lxx21520 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|61216490|sp|Q6ACP8|TILS_LEIXX RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50952144|gb|AAT89845.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 332

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 83/187 (44%), Gaps = 10/187 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG+DS+ L  A         F   +  AI VDH L+  + +     +     L 
Sbjct: 34  VLIGLSGGADSLALAAAAAFEAPRAGF---RSGAIVVDHGLQPGSAEVAAGAACQARALG 90

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +V     +   G   AAR AR+      A+   A  I+ AHT DDQ ETV +   R
Sbjct: 91  LGPVLVERVRVEAAGGPEGAARAARHTAFDSAARATAAARILLAHTLDDQAETVLLGLAR 150

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G G S +   +L D    + RPFL  RR   R+F     +   +DP N D  + R
Sbjct: 151 -----GSGPSSL-QGMLPDTGRLL-RPFLGLRRATTRAFCADSGLEPWDDPHNDDPAYTR 203

Query: 202 VRVRRFV 208
           VRVR  V
Sbjct: 204 VRVRSAV 210


>gi|56460788|ref|YP_156069.1| PP family ATPase [Idiomarina loihiensis L2TR]
 gi|61216428|sp|Q5R0Q7|TILS_IDILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56179798|gb|AAV82520.1| ATPase of the PP-loop superfamily [Idiomarina loihiensis L2TR]
          Length = 448

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 136/311 (43%), Gaps = 36/311 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F   +ES+     +L     ++ A+ GG+DS  +L  L          + ++ AI +DH
Sbjct: 9   LFCESLESL-----ALKPGQQLVAALGGGADSQTILDLLMRFRQQNP--QYQYLAIHLDH 61

Query: 61  CLRETAKDEVRYVSDVCSRLRIA------HSVVSWKNSKPQTGLMAAAREARYALISEHA 114
               ++ D    +        +       +  +  + SK      AA RE+RY  ++E  
Sbjct: 62  SFHPSSADWSSTIEHAAKSYGVKTVFEPLNVPIENRQSKE-----AAGRESRYRRMAELT 116

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +A L++  H  +DQ+ET +++ +R    KG  LS M     +  +  + RP L   +
Sbjct: 117 ED-DAVLLLGQHR-NDQIETFFLQLKRGSGPKG--LSSMAAIQPWVGSRRLCRPLLSVSK 172

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-------LR 227
           EDI S+  Q+ ++W ED +N D R E    R F+R   +  L  +  +F +       L 
Sbjct: 173 EDILSYAQQQKLTWIEDDTNYDTRIE----RNFLRHKVVPLLEQRWPQFGNSVLRSAKLC 228

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRS 286
            +    +  L+ + L    +        +L+  S  +   LLRV   + G + SLP Y  
Sbjct: 229 AEQQQVMDELLQEKLYKAQKHKSHFPLSLLSEHSAAMQRALLRV--WLQGQEYSLPSYEQ 286

Query: 287 MERVMLFLKSG 297
           +E++ L  +S 
Sbjct: 287 LEQIRLQAQSA 297


>gi|189425578|ref|YP_001952755.1| tRNA(Ile)-lysidine synthetase [Geobacter lovleyi SZ]
 gi|189421837|gb|ACD96235.1| tRNA(Ile)-lysidine synthetase [Geobacter lovleyi SZ]
          Length = 476

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 20/207 (9%)

Query: 6   IESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           ++++R F  +L  P   L V VSGG+DS+ LL     +L+      +      ++HCLR 
Sbjct: 17  LDAIRRF--NLCRPGDCLIVGVSGGADSVALL----DLLATLPGFPLTLVVAHLNHCLRG 70

Query: 65  TAKD-EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
              D + ++V  +  R ++   +    +S    + +  L  A R ARYA   E     +A
Sbjct: 71  AESDGDQQFVQQLADRYQLPCELRCADISQLARQQRLSLEEAGRTARYAFFDELRTRHHA 130

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIR 178
             I  AH  DDQ ET+ +        +G G +G+  + +  LN   I RP L   R+++R
Sbjct: 131 AAIAVAHHSDDQAETLLL-----RLLRGAGTTGL--SAMAPLNRDGIIRPLLGISRQELR 183

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
            +L  R + + ED SNTD  + R RVR
Sbjct: 184 EYLTARGLVFREDSSNTDQAYLRNRVR 210


>gi|315635636|ref|ZP_07890899.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Arcobacter butzleri JV22]
 gi|315479933|gb|EFU70603.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Arcobacter butzleri JV22]
          Length = 326

 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 15/198 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S +  +  L+A S G DS  L   L           I F    V++ +R  +KDEV Y  
Sbjct: 6   SAIKESKNLLAFSAGVDSSALFFLLLK-------QNIPFDIAIVNYNVRVQSKDEVNYAK 58

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  +      +   K  +  +     AR+ RY    E     +   ++TAH  +D+LE 
Sbjct: 59  KLALKYNKQIYIKDIK-LESTSNFEKTARDIRYKFFEEIIDENSYETLITAHQLNDKLEW 117

Query: 135 VYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
             M+       KG GL  +   +      N  + +P L+  +E++  FL Q NI +  D 
Sbjct: 118 FLMQ-----LTKGAGLVELIGFNEFEQKENYKVYKPLLKITKEELEKFLKQENIKYFIDN 172

Query: 193 SNTDDRFERVRVRRFVRD 210
           SN D++++R   R    D
Sbjct: 173 SNFDEKYKRNYFRHNFSD 190


>gi|168183607|ref|ZP_02618271.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Bf]
 gi|237796988|ref|YP_002864540.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Ba4 str. 657]
 gi|182673269|gb|EDT85230.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Bf]
 gi|229260540|gb|ACQ51573.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Ba4 str. 657]
          Length = 468

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 133/305 (43%), Gaps = 45/305 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77
           I+V VSGG DSM LL  L  +        I  + I+  H +R  E+  DE +YV + C  
Sbjct: 21  IIVGVSGGPDSMCLLHMLCLLKDQLRIKDIYVAHIN--HGVRGAESNADE-KYVENFCYT 77

Query: 78  SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ ETV
Sbjct: 78  NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +N 
Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDRYELNPRIDKTNL 191

Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247
              + R ++R     +++D     +   + +F ++  K NN +  +      +Y T  ++
Sbjct: 192 QSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251

Query: 248 SIIA----------------------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
            II                       I+Q++ N++   ++ +L +S    G  ++LP   
Sbjct: 252 RIIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNTTGKFVNLPSNI 311

Query: 286 SMERV 290
             E +
Sbjct: 312 KAENI 316


>gi|113867244|ref|YP_725733.1| ATPase [Ralstonia eutropha H16]
 gi|113526020|emb|CAJ92365.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ralstonia eutropha H16]
          Length = 439

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS+ LL A  +  ++   G  +  A+ V H L+  A D  R+ + +C++ ++ 
Sbjct: 1   MALSGGRDSVALLHAARAAAAEWGVGA-RVVALHVHHGLQADADDWDRFCAALCAQWQVG 59

Query: 84  HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + V    + +P+ G  + AAAR ARYA ++       A L++ AH  DDQ+ETV +R  R
Sbjct: 60  YFVRR-VSVQPEVGEGVEAAARRARYAALAAMCADSGARLLLFAHHQDDQVETVLLRLFR 118

Query: 142 DYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                GM  +GM      D    ++  RP+L   R +I ++     + W +DPSN D+R+
Sbjct: 119 GAGVAGM--AGMPGLRPLDERSGVTLLRPWLDVARAEIEAYCAANALQWVDDPSNADERY 176

Query: 200 ERVRVR 205
            R  +R
Sbjct: 177 ARNALR 182


>gi|15674260|ref|NP_268433.1| putative cell-cycle protein [Streptococcus pyogenes M1 GAS]
 gi|71909825|ref|YP_281375.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS5005]
 gi|94989520|ref|YP_597620.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS10270]
 gi|94993407|ref|YP_601505.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS10750]
 gi|61217414|sp|Q9A201|TILS_STRP1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|13621335|gb|AAK33155.1| putative cell-cycle protein [Streptococcus pyogenes M1 GAS]
 gi|71852607|gb|AAZ50630.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS5005]
 gi|94543028|gb|ABF33076.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS10270]
 gi|94546915|gb|ABF36961.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS10750]
          Length = 428

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L+AVSGG DSM LL  L+ +  D+   KI+     V+H  R  +  E  Y+     + 
Sbjct: 22  HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78

Query: 81  RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +++      G+ +  AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 79  DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 184 FLRNRVR 190


>gi|302380148|ref|ZP_07268620.1| tRNA(Ile)-lysidine ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311931|gb|EFK93940.1| tRNA(Ile)-lysidine ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 451

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 22/202 (10%)

Query: 13  VRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDE 69
           +R  +   H  IL+ +SGG+DS+ LL  L  +  D  F   +     ++H  R+TA +DE
Sbjct: 12  IREKLIEKHDKILIGLSGGADSVFLLNILIQLQRDLDF---EIYTCHINHSYRDTALRDE 68

Query: 70  --VRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
              R +SD  +      ++     S  NS     L  + R  RY   +E  K+ +   I 
Sbjct: 69  NFSRKISDENNIQFFSKKVDMKQYSIDNS---ISLEDSGRILRYKCFNEILKSEDFNKIA 125

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  DDQ+ET ++   R     G G+ G+C    ++ N  I RP L   + +I ++L +
Sbjct: 126 VAHHLDDQVETFFLHLFR-----GSGIDGLCGIQYHNKN--IIRPLLDVSKSEILNYLDE 178

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
            +I +  D +N     +R ++R
Sbjct: 179 NDIDYVTDETNFVADVQRNKIR 200


>gi|19553892|ref|NP_601894.1| ATPase [Corynebacterium glutamicum ATCC 13032]
 gi|62391535|ref|YP_226937.1| PP family ATPase [Corynebacterium glutamicum ATCC 13032]
 gi|61216526|sp|Q6M2E8|TILS_CORGL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|41326877|emb|CAF20721.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           [Corynebacterium glutamicum ATCC 13032]
          Length = 314

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 98/207 (47%), Gaps = 25/207 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL   ++VR +++      H+ + +SGG DS+ L+ A   VL+++S    + +AI +DH 
Sbjct: 17  FLELRKAVRPYLKE-----HVHIGLSGGPDSLALVAA---VLAEKS----QVTAICIDHN 64

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           L +T   EV + +   +R   A ++V      P  G+ AAAREARYA  ++    I    
Sbjct: 65  L-QTGSAEVTHNAAAMARHMGAQAIVKSIEVAPGEGMEAAAREARYAAFAQLTDEI---- 119

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
              AHT DDQ ET  +   R         +GM D       L I RP L  RR       
Sbjct: 120 -WVAHTMDDQAETYLLGGLRGNP------AGMKDASRRP-ELSIIRPLLGARRAHTHGAC 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
           ++  +    DP N DD F RV +R  V
Sbjct: 172 VELGLKPWHDPQNFDDAFRRVAIRNQV 198


>gi|258592317|emb|CBE68626.1| Putative ATPase; tRNA(Ile)-lysidine synthase (modular protein)
           [NC10 bacterium 'Dutch sediment']
          Length = 468

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 13/196 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L     +++AVSGG DSM +L  L  + + R  G +  + ++ D    E+A +  R+V
Sbjct: 17  RMLAAGEAVVLAVSGGVDSMAMLHLLLHLRT-RYHGPLHVAHLNHDLRGAESA-ETARFV 74

Query: 74  SDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              C   +I  ++          +    L AAAR+ RY  +   A    A  I   H  D
Sbjct: 75  QRQCEARQIPVTITRADGRALRDRRAGSLQAAARDLRYRFLERVADEQGAGRIAVGHHRD 134

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV M   R    +G+G        +  +   I RP + C RE+I  ++ +  I + 
Sbjct: 135 DQAETVLMNLLRGSGVRGIGG-------IPPVRGRIIRPLIDCSREEIERYVRKERIPYV 187

Query: 190 EDPSNTDDRFERVRVR 205
           ED SN    + R R+R
Sbjct: 188 EDSSNHVLAYSRNRIR 203


>gi|50913357|ref|YP_059329.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS10394]
 gi|61217204|sp|Q5XEL7|TILS_STRP6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50902431|gb|AAT86146.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS10394]
          Length = 428

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L+AVSGG DSM LL  L+ +  D+   KI+     V+H  R  +  E  Y+     + 
Sbjct: 22  HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78

Query: 81  RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +++      G+ +  AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 79  DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 184 FLRNRVR 190


>gi|227540926|ref|ZP_03970975.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183186|gb|EEI64158.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 270

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 86/190 (45%), Gaps = 28/190 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG DS+ L  AL +         +  +A+ +DH L    +D  R VS+  +R+ 
Sbjct: 1   MAVGLSGGPDSLALTAALVAE-------GVHVTALCIDHGL----QDGSREVSEEAARIA 49

Query: 82  ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
               A + V   N  P T   +AAR+ARY   +E    +       AHT DD  ET  + 
Sbjct: 50  RSWGAEARVIPINVDPPT--ESAARQARYRAFAEWGGPV-----CVAHTMDDLAETFLIA 102

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     GM   GM +T   +    I RP L  RR D  +   +  ++   DP N D  
Sbjct: 103 GLR-----GM-TCGMRETAEVE-GAHIIRPLLAVRRTDTVATCAEIGVTPWHDPQNADRA 155

Query: 199 FERVRVRRFV 208
           F RVRVRR V
Sbjct: 156 FTRVRVRREV 165


>gi|170757599|ref|YP_001783167.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum B1 str. Okra]
 gi|169122811|gb|ACA46647.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum B1 str. Okra]
          Length = 468

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 45/305 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77
           I+V VSGG DSM LL  L  + +      I  + I+  H +R  E+  DE +YV + C  
Sbjct: 21  IIVGVSGGPDSMCLLHMLCLLKNQLRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYT 77

Query: 78  SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ ETV
Sbjct: 78  NNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +N 
Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKTNL 191

Query: 196 DDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMR 247
              + R ++R     +++D     +   + +F ++  K NN +  +      +Y T  ++
Sbjct: 192 QSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKKLQ 251

Query: 248 ----------------------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
                                 +I+ I+Q++ N++   ++ +L +S    G  ++LP   
Sbjct: 252 RVIIDKRAFLEHESISTRILREAILYINQNLYNLEMRNIYDVLELSLNATGKFVNLPSNI 311

Query: 286 SMERV 290
             E +
Sbjct: 312 KAENI 316


>gi|126656632|ref|ZP_01727846.1| hypothetical protein CY0110_23376 [Cyanothece sp. CCY0110]
 gi|126621852|gb|EAZ92560.1| hypothetical protein CY0110_23376 [Cyanothece sp. CCY0110]
          Length = 323

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 27/202 (13%)

Query: 15  SLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD---- 68
           SL+ P  ++IL+AVSGG DS+ LL  +  + S   +       I++ HC    A D    
Sbjct: 20  SLILPHQSNILIAVSGGQDSLCLLKLIVDLQSKWGW------KIAIGHCDHGWASDIGIA 73

Query: 69  ----EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
               E+ Y  ++   L++A ++   K ++      AAARE RY  + E A     T ++T
Sbjct: 74  DHVRELAYHWNIPFYLKVAEAM---KETE------AAAREWRYQSLVEIANKNEFTEVVT 124

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            HT  D+ ET+     R    KG+G       +   ++L   RP L+  R +  +F  Q 
Sbjct: 125 GHTLSDRAETLLYNLIRGSGSKGLGSLTWKRPLSNKISL--VRPLLKVSRPETLAFCQQF 182

Query: 185 NISWCEDPSNTDDRFERVRVRR 206
           ++   ED  N +  + R R+R+
Sbjct: 183 DLPIWEDAVNANLDYARNRIRQ 204


>gi|224023875|ref|ZP_03642241.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM
           18228]
 gi|224017097|gb|EEF75109.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM
           18228]
          Length = 437

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 21/196 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYV 73
           L+    +LVA+SGG+DS+ LL  L  +         +  A   +  LR  E+ +DE R+V
Sbjct: 16  LLSGERVLVALSGGADSVALLCVLQEL-------GYRLEAAHCNFHLRGEESDRDE-RFV 67

Query: 74  SDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +C R +I   V+ +      +  +  +  AARE RY    E        ++  AH  D
Sbjct: 68  RQLCERRQIPLHVIHFSTGAYAASRKISIEMAARELRYRWFEELRDQGGFRVVAVAHHRD 127

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ +   R     G G++G+    +  +N  + RP L   RE I ++L +    + 
Sbjct: 128 DSVETLLLNLTR-----GTGINGLRG--IRPVNGTVVRPLLGVSREAILTYLDRLGQPYV 180

Query: 190 EDPSNTDDRFERVRVR 205
            D +N +D + R ++R
Sbjct: 181 TDSTNLEDAYARNKIR 196


>gi|331703058|ref|YP_004399745.1| tRNA(Ile) lysidine synthase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801613|emb|CBW53766.1| tRNA(Ile) lysidine synthase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 401

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 17/188 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DS+ LL  +  ++   +       A  V++  R  + ++   V+++C +L +
Sbjct: 13  LIAVSGGPDSVFLLCNVVKLVEPNNL-----VACHVNYNFRSDSNNDQMIVTNLCKQLNL 67

Query: 83  AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              +++     S  +    + AR  RY   +  A       ++ AH  +D +ET  ++ Q
Sbjct: 68  KLEILNINKDYSLLKQNFESWARVQRYDFFNMIASKYQIYNLLVAHNLNDLIETYLLQLQ 127

Query: 141 RDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+      GL   S   D ++Y       RP L  ++  I S+L    IS+  D +N+D 
Sbjct: 128 RNNLVDYYGLRPVSHYKDLVVY-------RPLLDIKKSQILSYLDTNKISYAIDSTNSDT 180

Query: 198 RFERVRVR 205
           +++R ++R
Sbjct: 181 KYQRNKIR 188


>gi|299067222|emb|CBJ38419.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum CMR15]
          Length = 462

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 6/98 (6%)

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRRED 176
            ATL++TAH  DDQ ETV ++  R     G GL G+    + ++  + + RP+L   R D
Sbjct: 122 GATLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMAHERRVTLLRPWLDVPRGD 176

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           I ++     ++W EDPSN D R+ R  +R  +  +  H
Sbjct: 177 IEAYARAHALAWVEDPSNGDARYARNALRPLLAGMAGH 214


>gi|73749106|ref|YP_308345.1| PP-loop family protein [Dehalococcoides sp. CBDB1]
 gi|123620029|sp|Q3ZYX5|TILS_DEHSC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|73660822|emb|CAI83429.1| PP-loop family protein [Dehalococcoides sp. CBDB1]
          Length = 471

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 16/244 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79
            IL+AVSGG DS+ +L  +H +  +  F         ++H LR    D +  YV+++ S 
Sbjct: 21  EILLAVSGGPDSVCMLYIMHKLSREMGF---SLRLAHLNHGLRAEESDRDAAYVTELASA 77

Query: 80  LRI--AHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L +      VS K   ++    L  AARE RYA +   A    +  +   HT DD +ETV
Sbjct: 78  LGLPLCQQKVSVKAYQAEHHLSLEEAAREMRYAFLCRTAAEFGSAAVAVGHTLDDNIETV 137

Query: 136 YMRSQRDYAEKGM-GLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +   R    +G+ GL  + + TI     L + RP L   R + + +  +  +   +D +
Sbjct: 138 MLHLVRGSGTRGLQGLRPVLNRTIAGAGCLRVIRPLLCLGRAETQVYCREAGLLPRQDIT 197

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVHMRSIIA 251
           N      R R+R  V    L  L      F++  LR        M +   +T  M++ + 
Sbjct: 198 NLSTEPLRNRIRLEV----LPLLKTINPAFEETILRTAFIAGEEMALLDEVTSQMKAELV 253

Query: 252 ISQD 255
           I QD
Sbjct: 254 IRQD 257


>gi|329962376|ref|ZP_08300380.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057]
 gi|328530099|gb|EGF56984.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057]
          Length = 423

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 23/205 (11%)

Query: 9   VRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--E 64
           V+F  R+ ++     ILVA+SGG+DS+ LL   H +LS          A   +  LR  E
Sbjct: 7   VQFINRNRLFSPEEKILVALSGGADSVALL---HLLLS----AGYTCEAAHCNFHLRDAE 59

Query: 65  TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           + +DE  +V ++C+     L   H     +  +    +  AARE RYA   E  K   A 
Sbjct: 60  SDRDEA-FVRNLCNARHVPLHTVHFDTKREAEERHISIEMAARELRYAWFEEIRKKCGAG 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET  +   R     G G++G+    +   N  + RP L   R++I S+
Sbjct: 119 VIAVAHHQDDSVETFLLNLIR-----GTGINGL--RGIRPKNGKVVRPLLCIGRKEIISY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L     ++  D +N  D + R ++R
Sbjct: 172 LESIGQAYVTDSTNLQDEYTRNKIR 196


>gi|297621115|ref|YP_003709252.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU
           86-1044]
 gi|297376416|gb|ADI38246.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU
           86-1044]
          Length = 244

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 82/193 (42%), Gaps = 15/193 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +I VA+SGG DS+ LL  L + +S + F     +A+ V       A  ++ Y+S +CS+L
Sbjct: 34  NIAVALSGGKDSLTLLFML-AAISGKGFPDFHLAAVHVTGEFSCGAGVDLPYLSAICSKL 92

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   VV   N K +T    +    R  L+ E A+ + A  I   H  DD  +T+ M   
Sbjct: 93  NIPF-VVKESNQKLETLECYSCSRERRKLLFEAAEQLGAKTIAFGHHRDDNAQTILM--- 148

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS--WCEDP------ 192
            +   KG     +    + D    I RP      E+IR F  Q+  S   C  P      
Sbjct: 149 -NMLHKGEFCGNLPKLHMIDYGKTIIRPLTYVSEEEIRRFAEQQGFSRVMCRCPVGQNSM 207

Query: 193 -SNTDDRFERVRV 204
               DD  E + V
Sbjct: 208 RKKVDDLIEEIEV 220


>gi|153808575|ref|ZP_01961243.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185]
 gi|149128897|gb|EDM20114.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185]
          Length = 426

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 17/190 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + ILVA+SGG+DS+ LL  LH+           F      H   E +  +  +V  +C +
Sbjct: 20  SKILVALSGGADSVALLRILHTAGYHCEAAHCNF------HLRGEESNRDESFVRQLCLK 73

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I      +  ++        +  AARE RY    E      A +I  AH  DD +ET+
Sbjct: 74  YNIRLHTTDFNTTQYAAEKHISIEMAARELRYNWFEEIKNKYRADVIAVAHHQDDSIETM 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G G++G+    +   N  I RP L   R++I  +L      +  D +N 
Sbjct: 134 LLNLIR-----GTGITGLLG--IRPRNGAIVRPLLCVNRKEIIQYLQNIEQDYVTDSTNL 186

Query: 196 DDRFERVRVR 205
           +D + R ++R
Sbjct: 187 EDEYTRNKIR 196


>gi|147669868|ref|YP_001214686.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. BAV1]
 gi|289433082|ref|YP_003462955.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. GT]
 gi|146270816|gb|ABQ17808.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. BAV1]
 gi|288946802|gb|ADC74499.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. GT]
          Length = 476

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 107/244 (43%), Gaps = 16/244 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79
            IL+AVSGG DS+ +L  +H +  +  F         ++H LR    D +  YV+++ S 
Sbjct: 26  EILLAVSGGPDSVCMLYIMHKLSREMGF---SLRLAHLNHGLRAEESDRDAAYVTELASA 82

Query: 80  LRI--AHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L +      VS K   ++    L  AARE RYA +   A    +  +   HT DD +ETV
Sbjct: 83  LGLPLCQQKVSVKAYQAEHHLSLEEAAREMRYAFLCRTAAEFGSAAVAVGHTLDDNIETV 142

Query: 136 YMRSQRDYAEKGM-GLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +   R    +G+ GL  + + TI     L + RP L   R + + +  +  +   +D +
Sbjct: 143 MLHLVRGSGTRGLQGLRPVLNRTIAGAGCLRVIRPLLCLGRAETQVYCREAGLLPRQDIT 202

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVHMRSIIA 251
           N      R R+R  V    L  L      F++  LR        M +   +T  M++ + 
Sbjct: 203 NLSTEPLRNRIRLEV----LPLLKTINPAFEETILRTAFIAGEEMALLDEVTSQMKAELV 258

Query: 252 ISQD 255
           I QD
Sbjct: 259 IRQD 262


>gi|305667064|ref|YP_003863351.1| putative cell-cycle protein [Maribacter sp. HTCC2170]
 gi|88707995|gb|EAR00233.1| putative cell-cycle protein [Maribacter sp. HTCC2170]
          Length = 434

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 21/192 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77
           +  L+A SGG DS+ +L  L S L       + FS    +  LR  E+ KDE R+V ++ 
Sbjct: 19  SRFLLACSGGLDSV-VLAHLCSELG------LDFSLAHCNFKLRDIESDKDE-RFVKELA 70

Query: 78  SRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             L++   V+ +      ++    +  AAR+ RY       K  +   ++TAH  DD +E
Sbjct: 71  EILKVPCFVICFDTLEYANEQGVSIQMAARKMRYEWFKSLKKQHSIKTLVTAHHADDNIE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +   R     G G+ G+  T +      ISRP L   R  I  +  Q NI W ED S
Sbjct: 131 TFLINLSR-----GTGIKGL--TGIPSKTNEISRPLLAFSRLQIMEYAKQSNIEWREDQS 183

Query: 194 NTDDRFERVRVR 205
           N + ++ R ++R
Sbjct: 184 NKETKYLRNKIR 195


>gi|192362306|ref|YP_001981512.1| mesJ protein [Cellvibrio japonicus Ueda107]
 gi|190688471|gb|ACE86149.1| mesJ protein [Cellvibrio japonicus Ueda107]
          Length = 455

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 12/184 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+   V  SGG DS  LL AL  +        ++  A+ V+H +   A D   +   + +
Sbjct: 47  PSRWWVGFSGGLDSAVLLHALVQLQL-----PVQICALHVNHQISPHADDWQAHCEALAA 101

Query: 79  RLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           RL +A ++   W  ++ + G+  AAR+ARY +  ++    +   ++TAH  DDQ ET+ +
Sbjct: 102 RLGVAFYAEKVWVINRGK-GIEDAARQARYHIFEQYLAPHDC--VLTAHHADDQAETLLL 158

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +G  L+ M          W+ RP L   R+ +  +     + W +D SNTD 
Sbjct: 159 RLMRGTGPRG--LAAMAGKRPLGQG-WLVRPLLSFSRKLLEDYARIHRLVWVDDESNTDL 215

Query: 198 RFER 201
            ++R
Sbjct: 216 HYDR 219


>gi|312888854|ref|ZP_07748417.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311298729|gb|EFQ75835.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 445

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 118/251 (47%), Gaps = 35/251 (13%)

Query: 5   PIES-VRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           P++S + F  ++ ++  +  +LVAVSGG DS    + L  +L    F         + HC
Sbjct: 3   PVQSFLNFIAQNQLFTQNDRLLVAVSGGRDS----VVLAHLLKQAGFN------FGIAHC 52

Query: 62  ---LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGL--MAAAREARYALISEH 113
              LR + A+ E  + S +   L +    +S+       Q G+    AAR+ RY    + 
Sbjct: 53  NFQLRIDEAQAEQAFTSQLADALTVPFHTISFDTQTYARQNGISTQMAARDLRYTWFEQI 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                 + I  AH  +D +ET+ +   R     G G++GM   +    N ++ RP L   
Sbjct: 113 RNEHGYSYIAVAHHQNDSVETILLNLTR-----GTGIAGMHGIL--PQNGYLVRPLLFLN 165

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV----RDID--LHALYLK-MKKFQDL 226
           R++I + + Q  + + ED SN   ++ R ++R  V    ++++  L   + + M++F++L
Sbjct: 166 RDEIDTIVDQNGLHFMEDSSNASSKYARNKIRHQVIPPLKELNPKLEETFDRNMERFREL 225

Query: 227 RVKVNNAVAML 237
            + +N+ +  L
Sbjct: 226 ELLLNHQLEQL 236


>gi|282892295|ref|ZP_06300691.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497886|gb|EFB40237.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 426

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 6/184 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV +SGG DS+ LL  L   L       +K     +DH  R+ ++ E   +  +   L 
Sbjct: 19  ILVGLSGGPDSIALLYLL---LKCAKMIPLKLGIAHIDHRWRQESEKEAETLKTLAESLH 75

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +     +     L AA R+ RY   +E A   +   ++  H  DDQ ET+  R   
Sbjct: 76  VPFHLKVLDPTSMHGNLEAACRDLRYQFFAEVAAIYDYQAVVLGHHQDDQAETILKRILE 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                 + L G+ +T      L I RP L   +  I S+L + +I +  D +N D +F R
Sbjct: 136 --GASLVKLRGIAETKQQG-GLAIWRPLLEVDKAKILSWLSKHDIPFFNDSTNLDPKFLR 192

Query: 202 VRVR 205
            ++R
Sbjct: 193 GKMR 196


>gi|119774292|ref|YP_927032.1| cell cycle protein MesJ [Shewanella amazonensis SB2B]
 gi|119766792|gb|ABL99362.1| cell cycle protein MesJ [Shewanella amazonensis SB2B]
          Length = 497

 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 79/184 (42%), Gaps = 7/184 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ +++  SGG DS  +  AL          +     + V H L   A    R+     +
Sbjct: 27  PSKLVLGYSGGLDSELMACALSHYAKKHPGTQCLL--VHVHHGLSPNADTWARHCEHRAA 84

Query: 79  RLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           R  +   +   +     +  L A AR ARYA +  H       +++TAH  DDQLETV +
Sbjct: 85  RYELEFVLEKVRVKQGARLSLEAEARSARYAALMAH--LAEGDVLLTAHHQDDQLETVLL 142

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    KG+   G   ++  D   +  RPFL   RE +       ++S  ED SN D 
Sbjct: 143 ALARGLGPKGLAAMGQQQSL--DDGAFQVRPFLGLSREYLEDAASALDLSHIEDESNQDT 200

Query: 198 RFER 201
           RF+R
Sbjct: 201 RFDR 204


>gi|172056094|ref|YP_001812554.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15]
 gi|259533717|sp|B1YGQ4|TILS_EXIS2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|171988615|gb|ACB59537.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15]
          Length = 414

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 17/186 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--R 79
           +LVAVSGG DSM L   L+    D          + V H LR+ + +E   V       R
Sbjct: 12  LLVAVSGGCDSMVLAHLLYEANHD-------LMIVHVHHGLRKESDEEAEAVRAWAEARR 64

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + I  + + W+   P     AA R  RYA   E         ++ AH  DDQLET+ ++ 
Sbjct: 65  VGIRMTRLEWEGQAPS---QAACRTRRYAFFQEVMAETGRRHLVLAHHRDDQLETLLIQL 121

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R  A    G+ G+     +     I RP L   ++ +  +   R + W ED +N   ++
Sbjct: 122 IRGEA----GVDGIPRIRSFATG-QIHRPLLPYSKQQLYDYAKARQVVWHEDETNAGTKY 176

Query: 200 ERVRVR 205
            R ++R
Sbjct: 177 LRNQMR 182


>gi|319936954|ref|ZP_08011364.1| hypothetical protein HMPREF9488_02198 [Coprobacillus sp. 29_1]
 gi|319807890|gb|EFW04469.1| hypothetical protein HMPREF9488_02198 [Coprobacillus sp. 29_1]
          Length = 411

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 12/190 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++ ++ VSGG DSM LL  L      R  G     A  V++  R  +  +   V D C+ 
Sbjct: 10  SYYVIGVSGGCDSMYLLDTL------RKKGYHLLVA-HVNYNYRHDSYIDYELVCDYCAT 62

Query: 80  LRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             +      +  +    G     AR  RY    E  K      ++  H  DD LETVYM+
Sbjct: 63  HGLPFYYKQFHEADYHDGNFQDQARTLRYRFYKEIYKLYKCDGLILGHHLDDHLETVYMQ 122

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R      +G+        Y  ++ + RP +R  +++I     +++I + +D +N +  
Sbjct: 123 LERHNTVHYLGIKEES----YVQDMRVIRPLMRSYKDEILQVCHEQHIEYHDDYTNFEID 178

Query: 199 FERVRVRRFV 208
           FER R+R  +
Sbjct: 179 FERDRIRNTI 188


>gi|28894923|ref|NP_801273.1| cell cycle protein [Streptococcus pyogenes SSI-1]
 gi|71902678|ref|YP_279481.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS6180]
 gi|61217343|sp|Q879R7|TILS_STRP3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28810168|dbj|BAC63106.1| putative cell cycle protein [Streptococcus pyogenes SSI-1]
 gi|71801773|gb|AAX71126.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS6180]
          Length = 428

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L+AVSGG DSM LL  L+ +  D+   KI+     V+H  R  +  E  Y+     + 
Sbjct: 22  HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78

Query: 81  RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +++      G+ +  AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 79  DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 184 FLRNRVR 190


>gi|302346698|ref|YP_003814996.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC
           25845]
 gi|302150433|gb|ADK96694.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC
           25845]
          Length = 456

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 21/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           LVA+SGG+DS+ LL+ +      +  G  +  A+  +  LR  E+ +DE ++  D+C R 
Sbjct: 22  LVALSGGADSVALLLCI------KELG-YRVEAVHCNFHLRGEESLRDE-QFCEDLCQRE 73

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    V +         +  +  AARE RY    +  + + A  +   H  +D +ET+ 
Sbjct: 74  NIPLHKVHFDTQAYADLHKVSIEMAARELRYRYFFQLKEALGADGVCVGHHKEDSVETIL 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GLSG+    +   N  + RP L   R++I  +L Q  +S+  D +N  
Sbjct: 134 INLVR-----GTGLSGLMG--IRPRNHDVIRPLLCVTRQEIEDYLHQHAVSFVTDSTNLI 186

Query: 197 DRFERVRVR 205
           D   R ++R
Sbjct: 187 DDVVRNKIR 195


>gi|309778158|ref|ZP_07673093.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914067|gb|EFP59872.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 406

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL         R  G ++     +++  R+TA  ++  V   C+   I
Sbjct: 13  IIGVSGGPDSMALLDMC------RKEG-LRLVVAHMNYQKRDTANRDMELVRSYCAHFHI 65

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                  +  +      A ARE RY +  E  K  +A+ ++ AH  DD LET  M  +R 
Sbjct: 66  PFEA-RLQTKRCVGNFQAFAREERYRMYQELLKQYDASAVLLAHHLDDHLETYLMAKERG 124

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
             ++ +G+        + +   I RP +   + ++ ++  +  + +  D SN  D + R 
Sbjct: 125 SMKEYLGIQEEA----FIMGCRIIRPLMAYSKRELEAYCRENAVPFGIDESNLSDHYARN 180

Query: 203 RVR 205
           R+R
Sbjct: 181 RIR 183


>gi|253581056|ref|ZP_04858317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847719|gb|EES75688.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 485

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 33/203 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKD-EVRYVSDVCS 78
           +L  VSGGSDSM +L  L  +      GK+ F+   + + H +R    D +  +V ++C 
Sbjct: 21  VLAGVSGGSDSMAMLRILKELQ-----GKLDFTLRVVHIHHGIRGKEADRDQSFVENICR 75

Query: 79  RLRIAHSVV---------SWKNSKPQTGLM----AAAREARYALISEHAKTINATLIMTA 125
           + +I  +V           WK  + +TG +    A  REA  A+       I   L   A
Sbjct: 76  KWQIPCTVYCYDVPGLSREWKLGEEETGRIVRKEAFQREA--AVCGRKDSEIKIAL---A 130

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +D  ET+     R     G GL G+C   +  ++  I RP L   R+ I  +L ++ 
Sbjct: 131 HNQEDLAETMLHNLCR-----GTGLRGLC--TMRPVDGEIIRPILCLSRDKIAEYLKEKK 183

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           IS  +D +N  D + R R+R  +
Sbjct: 184 ISHIQDSTNLSDEYTRNRIRHNI 206


>gi|94987642|ref|YP_595743.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS9429]
 gi|94991508|ref|YP_599607.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS2096]
 gi|94541150|gb|ABF31199.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS9429]
 gi|94545016|gb|ABF35063.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS2096]
          Length = 428

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L+AVSGG DSM LL  L+ +  D+   KI+     V+H  R  +  E  Y+     + 
Sbjct: 22  HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78

Query: 81  RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +++      G+ +  AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 79  DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 184 FLRNRVR 190


>gi|139472899|ref|YP_001127614.1| PP-loop family protein [Streptococcus pyogenes str. Manfredo]
 gi|134271145|emb|CAM29355.1| PP-loop family protein [Streptococcus pyogenes str. Manfredo]
          Length = 428

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L+AVSGG DSM LL  L+ +  D+   KI+     V+H  R  +  E  Y+     + 
Sbjct: 22  HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78

Query: 81  RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +++      G+ +  AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 79  DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIR--GSRLRYLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 184 FLRNRVR 190


>gi|86742988|ref|YP_483388.1| hypoxanthine phosphoribosyltransferase [Frankia sp. CcI3]
 gi|86569850|gb|ABD13659.1| hypoxanthine phosphoribosyltransferase [Frankia sp. CcI3]
          Length = 595

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 13/201 (6%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  V  L     +LVA SGG DS+ L  AL  V   R+   ++   ++VDH     + 
Sbjct: 43  AVRRAVTDLPPGGLVLVACSGGPDSLALAAALAFVAPRRA---LRAGMVTVDHGWDTGST 99

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +    V+     L +    V  +++    G+   AR    A I+  A  + A  ++  HT
Sbjct: 100 ERAERVARQGRALGLDPVEVLTEHTARSEGIARQAR---RAAIAAAADRLGARAVLLGHT 156

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R    + +G     D +L       SRP L  RR D R+  L   + 
Sbjct: 157 LDDQAETVLLRLARGAGARSLGGMSADDGLL-------SRPLLGIRRADTRAACLAEGLE 209

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
             +DP+N D  F R RVR  V
Sbjct: 210 VWDDPTNRDPAFTRSRVRHTV 230


>gi|219849533|ref|YP_002463966.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aggregans DSM 9485]
 gi|219543792|gb|ACL25530.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aggregans DSM 9485]
          Length = 474

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 156/373 (41%), Gaps = 64/373 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77
           A +LVAVSGGSDS+ LL  L ++ ++   G +   A  +DH LR  E+A D   +V+ + 
Sbjct: 19  ARLLVAVSGGSDSLALLHMLAALYAE--GGPVPIVA-HLDHGLRGAESAADAA-FVTSLA 74

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   +  +V+   +  P T   A AR  RY  ++  A       ++ AH  DDQ ETV M
Sbjct: 75  AEWGL-RAVIEQAHLPPGT-TSATARIVRYTFLARTAIAEGVDAVLVAHQADDQAETVLM 132

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWIS----------------RPFLRCRREDIRSFL 181
              R      +GL GM + +++  + W +                RP L  RR  +  + 
Sbjct: 133 HLLRGAGP--VGLRGMRERVVW--SEWAAPAIAAGVVPSSGPPLLRPLLTIRRTTLADYC 188

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAV 234
               ++  +DP+N +  + R R+R  +      +   +Y  + +   +  +    +   +
Sbjct: 189 KMHALTPRDDPTNRNLHYLRARIRHQLLPQLATENPQIYAALNRTARICAEDYDYIQQML 248

Query: 235 AMLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           A+  PK +    R +IA  +  L +    L  Y LR + A  G +   P    ++  +  
Sbjct: 249 AVQWPKLIAERRRGLIAFDRAALRVLHPALQRYALRRAVAELGAE--EPSLAQIDAALQM 306

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
           LK G+ G                   R +R  P L+L  ++ TV         L D+   
Sbjct: 307 LK-GQAG-------------------RQMRLTPQLVLTCDQLTV------TVALPDAEPP 340

Query: 354 IGPQSYRKADVPS 366
           + PQ Y    +P+
Sbjct: 341 VAPQVYEPVSLPT 353


>gi|163847595|ref|YP_001635639.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222525450|ref|YP_002569921.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl]
 gi|163668884|gb|ABY35250.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222449329|gb|ACM53595.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl]
          Length = 474

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 28/207 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77
           A +LVAVSGGSDS+ LL  L ++   R+ G     A  +DH LR  E+A D   +V+   
Sbjct: 19  ARLLVAVSGGSDSLALLHMLCTL--HRAGGPTPIVA-HLDHGLRGAESAAD-ADFVAATA 74

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   +  ++V   +  P T   A AR ARY  ++  A   +   ++ AH  DDQ ETV M
Sbjct: 75  TAWGV-RAIVGRAHLPPGT-TPAEARTARYTFLATTALAEHVDAVLVAHQADDQAETVLM 132

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWIS----------------RPFLRCRREDIRSFL 181
              R       GL GM   + +  + W +                RP L   R ++ ++ 
Sbjct: 133 HLLRGAGPA--GLRGMRARVEW--SEWAAALIESGQAPPHGPPLLRPLLTVSRSELAAYC 188

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
               ++  +DP+N +  + R R+R  +
Sbjct: 189 AAHQLTPRDDPTNRNLHYVRARIRHVL 215


>gi|19745210|ref|NP_606346.1| cell-cycle protein [Streptococcus pyogenes MGAS8232]
 gi|61217382|sp|Q8P322|TILS_STRP8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|19747299|gb|AAL96845.1| putative cell-cycle protein [Streptococcus pyogenes MGAS8232]
          Length = 428

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L+AVSGG DSM LL  L+ +  D+   KI+     V+H  R  +  E  Y+     + 
Sbjct: 22  HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78

Query: 81  RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +++      G+ +  AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 79  DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIR--GSRLRYLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 184 FLRNRVR 190


>gi|163857761|ref|YP_001632059.1| cell cycle protein MesJ [Bordetella petrii DSM 12804]
 gi|163261489|emb|CAP43791.1| cell cycle protein MesJ [Bordetella petrii]
          Length = 367

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 11/192 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG+DS   ++A H+    R  G I      V H L+  A D   +V  +   L+
Sbjct: 56  LAVAVSGGADSA--MLAAHAAPLARRLG-IDLLIFHVHHGLQAAADDWAAHVQALGRILQ 112

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++ H+  +   +    G+ AAAR+ARYA +++ A+   A  I+ AH   DQ ETV +R  
Sbjct: 113 VSVHTSRAQVRADSGLGIEAAARDARYAALADLARQHEAGHILLAHHQGDQAETVLLRLL 172

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI----RSFLLQRNISWCEDPSNTD 196
           R    +GM  + M  ++  D  L++ RP+L   R DI    ++F  Q      +DP+N D
Sbjct: 173 RGAGVQGM--AAMAPSMPRDGLLYL-RPWLNQGRADILRAAQAFAAQHGWQPVQDPTNAD 229

Query: 197 DRFERVRVRRFV 208
            R+ R  VR  +
Sbjct: 230 PRYTRAAVRELL 241


>gi|189346163|ref|YP_001942692.1| tRNA(Ile)-lysidine synthetase [Chlorobium limicola DSM 245]
 gi|189340310|gb|ACD89713.1| tRNA(Ile)-lysidine synthetase [Chlorobium limicola DSM 245]
          Length = 325

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 95/223 (42%), Gaps = 37/223 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDV 76
           H+LVAVSGG DSM LL  L +V S      +    ISV HC   LR E +  + R+V + 
Sbjct: 23  HLLVAVSGGPDSMALLYLLCAVAS------VVRCRISVAHCNFQLRGEESDSDERFVMEQ 76

Query: 77  CSRLRI---------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           C  L +         A    SWK S  +T     AR  RY+      +    T I T H 
Sbjct: 77  CRLLGVECFSRQFDTAAVSASWKKSVEET-----ARLQRYSWFETLLQEREMTKIATGHH 131

Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             D  ET+     R  +  G+ G+  M   ++        RP L   + DI  +L ++ I
Sbjct: 132 VSDNAETILFNLFRGTSLLGLKGIRAMHGRVI--------RPLLLLHKSDILGYLQEKEI 183

Query: 187 SWCEDPSNT----DDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +  D SN     D  F R RV   + +   H L + +++  +
Sbjct: 184 PFRTDASNESIDYDRNFIRNRVIPLIEERFEHKLTVSLQRLSE 226


>gi|255733074|ref|XP_002551460.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240131201|gb|EER30762.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 503

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 22/208 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ + VA+SGG DSM L   L +    R    +   AI++DH  R  + +E + V     
Sbjct: 21  PSKVAVALSGGPDSMLLTWLLQN--QKRQMKNLDIYAITIDHKYRSGSHEEAKKVHQWIK 78

Query: 79  RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              + H + S +     + K  T     ARE RY ++S+     +  ++   H  DDQLE
Sbjct: 79  DWDVLHIIKSLEYKDNIDPKKLTNFEEVAREERYRVMSQICFKESIPVLFMGHHRDDQLE 138

Query: 134 TVYMRSQRDYAEKGMGLSGM-------------CDTILYDLNLWISRPFLRCRREDIRSF 180
           T   R Q + +    GL+G               +     L + I+RPFL   ++DI   
Sbjct: 139 TFIQRLQGNSS--IFGLAGTRSVSPVPTSKDLSPNETQDKLQIQIARPFLEFDKKDILET 196

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV 208
                I +  D +N D    R    R++
Sbjct: 197 CNANGIHYVTDLTNGDVGLTRRNYLRYL 224


>gi|297623312|ref|YP_003704746.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
 gi|297164492|gb|ADI14203.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
          Length = 556

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 86/188 (45%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL  L ++   R +G        +DH LR  A +   +V  +C    
Sbjct: 21  LLVAVSGGGDSVALLRLLLALPEPR-WG---LEVAHLDHALRPDAAEAAAFVRALCWEHG 76

Query: 82  IA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +A H+    V+         L  AAR  RY  ++  AK + A  ++TAHT DDQ ETV M
Sbjct: 77  VACHTARVDVARIAKDRGWNLEDAARRLRYGFLTRTAKRVGADAVVTAHTQDDQAETVLM 136

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R  A    G+      +L        RP L   R  +R++L        EDP+N D 
Sbjct: 137 QLLRGAAHL-QGMPARQGRVL--------RPLLEVPRSALRAYLRALGQDCLEDPTNADT 187

Query: 198 RFERVRVR 205
              R  VR
Sbjct: 188 SRTRAWVR 195


>gi|254388634|ref|ZP_05003867.1| hypoxanthine phosphoribosyltransferase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813246|ref|ZP_06771889.1| tRNA Ile -lysidine synthetase [Streptomyces clavuligerus ATCC
           27064]
 gi|326441644|ref|ZP_08216378.1| tRNA(Ile)-lysidine synthase [Streptomyces clavuligerus ATCC 27064]
 gi|197702354|gb|EDY48166.1| hypoxanthine phosphoribosyltransferase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325845|gb|EFG07488.1| tRNA Ile -lysidine synthetase [Streptomyces clavuligerus ATCC
           27064]
          Length = 371

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 21/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL      R    ++   I+VDH L++ +       ++V +RL 
Sbjct: 72  VLVACSGGADSMALASAL--AFEARKL-SVRAGGITVDHGLQDGS---ALRAAEVAARLT 125

Query: 82  I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                   A +V   ++  P+     A     YA + E A  + A  ++  HT DDQ ET
Sbjct: 126 AMGLDPVEATAVCVGRDGGPEAAARDAR----YAALDEAADRLGAAAVLLGHTRDDQAET 181

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   LSGM    +        RPFL+  R+  R   + +++   +DP N
Sbjct: 182 VLLGLARGSGIR--SLSGMA--AVSGTRGRYRRPFLQIDRQTARKACMVQSLPVWDDPHN 237

Query: 195 TDDRFERVRVR 205
           TD  + R R+R
Sbjct: 238 TDPAYTRSRLR 248


>gi|25029100|ref|NP_739154.1| hypothetical protein CE2544 [Corynebacterium efficiens YS-314]
 gi|259505902|ref|ZP_05748804.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           efficiens YS-314]
 gi|61216660|sp|Q8FMG0|TILS_COREF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|23494387|dbj|BAC19354.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166506|gb|EEW51060.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           efficiens YS-314]
          Length = 313

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 21/188 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+ + +SGG DS+ L      V + R+ G  + +AI ++H L+E + +     +     +
Sbjct: 31  HVHIGLSGGPDSLAL------VAAARAEGA-EVTAICINHNLQEGSAEVSERAAAQAEHM 83

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
                + S   + P   + A AREARYA  ++   TI A      HT DDQ ET  +   
Sbjct: 84  GATALIRSI--TVPPGSMEAQAREARYAEFAQLTDTIWA-----GHTMDDQAETFLLAGL 136

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R         +GM  +     +L + RP L  RR D      +  ++  +DP N D  F 
Sbjct: 137 RGNP------AGM-KSASRRPDLTVIRPLLGVRRADTHGACTELGLTPWQDPQNRDRAFR 189

Query: 201 RVRVRRFV 208
           RV +R  V
Sbjct: 190 RVAIREQV 197


>gi|326328803|ref|ZP_08195139.1| tRNA(Ile)-lysidine synthase [Nocardioidaceae bacterium Broad-1]
 gi|325953425|gb|EGD45429.1| tRNA(Ile)-lysidine synthase [Nocardioidaceae bacterium Broad-1]
          Length = 327

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 11/201 (5%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           VR  +  L     ++VA SGG+DS+   +A  +V      G +     +VDH ++E +  
Sbjct: 14  VRATLEQLEPGDKVIVACSGGADSL--ALASAAVFEGHKLG-LHVIGATVDHGMQEGSDA 70

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +   V    + + I  +V +    K    G  AAAR+ARYA++ + A+ ++A++I+  HT
Sbjct: 71  QASKVIAQLAEMGIDETVTATVEVKADGEGPEAAARQARYAVLDQLAERLDASVILLGHT 130

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R    +   LSGM     +D      RP L   R D  +      + 
Sbjct: 131 RDDQAETVLLGLTRGSGAR--SLSGM--RAAFDR---YRRPLLGTTRIDTETACQIEGLD 183

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
             +DP N D  + R R+R  V
Sbjct: 184 VWQDPHNRDFAYTRARIRHRV 204


>gi|229588820|ref|YP_002870939.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
           SBW25]
 gi|229360686|emb|CAY47544.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
           SBW25]
          Length = 440

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             A+ V H L+  A     +   +C  L +   V+     +P   L  AAR+ARY    E
Sbjct: 52  LGAVHVHHGLQTAADAWPAHCQSICDNLGVPLRVMR-VQVQPGASLERAARDARYQAFIE 110

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
              T    +++T    DDQ ET+  R  R    +G  LS M          ++ RP L  
Sbjct: 111 --VTGAGQVLLTGQHRDDQAETLLFRLLRGAGVRG--LSAMPAQRPLAAG-YLVRPLLEV 165

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            R ++ ++  +  + W EDPSN D RF R  +R  V
Sbjct: 166 SRAELEAYAEEHQLEWIEDPSNADSRFSRNYLRHRV 201


>gi|21232029|ref|NP_637946.1| cell cycle protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767844|ref|YP_242606.1| cell cycle protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|61217383|sp|Q8P7L3|TILS_XANCP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|81306178|sp|Q4UWI7|TILS_XANC8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21113767|gb|AAM41870.1| cell cycle protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573176|gb|AAY48586.1| cell cycle protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 435

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 9/191 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA +LVA SGG DS    + LH++ +   + +    A+ V H L   A     +    C+
Sbjct: 15  PAPVLVAYSGGMDSA---VLLHALAATDGYREAGLRAVHVHHGLHADADAWALHCQQQCA 71

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L IA  VV  + ++  +G    A        +  A       +  AH  DDQ ET  +R
Sbjct: 72  DLGIALQVVRVQVAR-DSGSGLEAAARAARHAAFAATLAAGEWLALAHHRDDQAETFLLR 130

Query: 139 SQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           + R  A    GL+ M     +    LW  RP L   R D+ ++     + W +DPSNTD 
Sbjct: 131 ALR--ASGPDGLAAMRPQRPFGPGTLW--RPLLGHARADLAAYAQAHAVRWIDDPSNTDP 186

Query: 198 RFERVRVRRFV 208
           + ER  +R  V
Sbjct: 187 QHERNFLRTQV 197


>gi|317476539|ref|ZP_07935786.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907282|gb|EFV28989.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 370

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +++A+SGG+DS+ LL  L ++  +       F         +E+ +DE  +V  +C++  
Sbjct: 22  VIIALSGGADSVALLCLLQTLGYNCEAAHCNFHLRG-----KESDRDEA-FVCQLCAKRQ 75

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I H        +    +  AARE RY    E  +   A +I  AH  DD +ET+ +
Sbjct: 76  VPLHIVHFNTVRTAEERHISIEMAARELRYEWFEEIRRKSGANVIAVAHHRDDSVETLLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+    +   N  I RP L   R++I ++L +    +  D +N  D
Sbjct: 136 NLIR-----GTGINGL--RGIRPKNGHIVRPLLCLDRKEIINYLNRTGQDYVTDSTNLQD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|149372519|ref|ZP_01891631.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49]
 gi|149354562|gb|EDM43126.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49]
          Length = 436

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 89/196 (45%), Gaps = 27/196 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77
           I+VA SGG DS        +VL+ R   ++ F+ I + HC   LR  A D +  +V ++ 
Sbjct: 21  IIVACSGGLDS--------TVLT-RLLKQLGFT-ICIAHCNFSLRGEASDGDAAFVENLA 70

Query: 78  SRLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + L I          ++ N    +  MAA RE RY    E    I   LI TAH  DD L
Sbjct: 71  TELDIPFYKTVFDTKAFANDHKLSTQMAA-RELRYQWFKELRTQIKFDLIATAHHADDML 129

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +   R     G G+ G+  T + +L   I RP L   R +I +F  +    W ED 
Sbjct: 130 ETVLINLSR-----GTGIRGL--TGIPELTETIIRPLLPFSRTEILNFAKKSEFYWREDA 182

Query: 193 SNTDDRFERVRVRRFV 208
           SN    + R  +R  V
Sbjct: 183 SNASTDYLRNDLRHNV 198


>gi|260887811|ref|ZP_05899074.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185]
 gi|260862487|gb|EEX76987.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185]
          Length = 500

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L + + I+VAVSGG+DSM LL  L  +   R+   +       +H +R E ++++  YV+
Sbjct: 15  LAHGSSIVVAVSGGADSMALLDLLLHLQERRA---LSLHVAHFEHGIRGEASREDADYVA 71

Query: 75  DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             C    +A SV    V     + +  L  AARE RYA +      + A  I  AH  DD
Sbjct: 72  AFCRARGVACSVEAADVPQYAKERRMSLETAARELRYAFLRRVRACVGAQAIAVAHHADD 131

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV       +  +G GL G+        +  + RP L C +E++ +      I    
Sbjct: 132 QAETVLQ-----HILRGAGLHGLVGMTPRTGD--VVRPLLACTKEELVAHCAAHGIEVRH 184

Query: 191 DPSN 194
           D +N
Sbjct: 185 DATN 188


>gi|163801796|ref|ZP_02195693.1| cell cycle protein MesJ [Vibrio sp. AND4]
 gi|159174304|gb|EDP59108.1| cell cycle protein MesJ [Vibrio sp. AND4]
          Length = 409

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
           AR+ARY  +++H +     L++T    DDQ+ET  +  +R    KG  LS M +++ +  
Sbjct: 71  ARDARYQALAKHIQA--GDLLLTGQHADDQVETFLLALKRGSGPKG--LSSMAESMPFAD 126

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              + RPFL  +RE I +   ++ + W ED SN D RF+R
Sbjct: 127 GT-LVRPFLTVKREQIEAVAKEQGLDWVEDESNQDTRFDR 165


>gi|255320834|ref|ZP_05362008.1| tRNA(Ile)-lysidine synthase [Acinetobacter radioresistens SK82]
 gi|255302003|gb|EET81246.1| tRNA(Ile)-lysidine synthase [Acinetobacter radioresistens SK82]
          Length = 405

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 13/159 (8%)

Query: 49  GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108
           G+I+  AI VDH L+  ++D   +V   C +L +   V     +     L   AREARY 
Sbjct: 7   GRIR--AIYVDHQLQAQSRDWGIHVQAECMKLDVPCIVQPVHVNA--GNLERQAREARYQ 62

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWIS 166
              +H K+    +++ AH   DQ ETV +R        G G+SG+      D    + I 
Sbjct: 63  AYHQHIKS--GEVLVLAHHQQDQAETVLLR-----LFSGTGISGLSAMKQLDQRHEMPIW 115

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           RP L   RE I  +  Q NIS+ +DPSN +  ++R   R
Sbjct: 116 RPMLSLSREQICQWAEQLNISFIDDPSNNNTHYDRAWCR 154


>gi|254448066|ref|ZP_05061530.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HTCC5015]
 gi|198262492|gb|EDY86773.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HTCC5015]
          Length = 432

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 8/187 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +VA SGG DS  LL AL      ++  K +  AI V H L++ A D + +       L +
Sbjct: 22  VVAFSGGLDSTVLLHAL-----TKTPHKARLKAIHVHHGLQDVADDWLTHCEQFSRSLDV 76

Query: 83  AHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           A      +   P ++GL   AR       +      +  +++TAH  +DQ ET+ +   R
Sbjct: 77  AFEAC--RVLVPSESGLSLEARARDARYRALSDSLQSGDVLLTAHHAEDQAETLLLNLMR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+        +    + W  RP L   + D++S+  Q  + W ED SN D++F+R
Sbjct: 135 GSGVEGLSAMPELKALSPSRSTWHGRPLLNQSKADLQSYARQFQLQWVEDHSNRDEQFDR 194

Query: 202 VRVRRFV 208
             +R  V
Sbjct: 195 NYLRHRV 201


>gi|330838705|ref|YP_004413285.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185]
 gi|329746469|gb|AEB99825.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185]
          Length = 513

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L + + I+VAVSGG+DSM LL  L  +   R+   +       +H +R E ++++  YV+
Sbjct: 28  LAHGSSIVVAVSGGADSMALLDLLLHLQERRA---LSLHVAHFEHGIRGEASREDADYVA 84

Query: 75  DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             C    +A SV    V     + +  L  AARE RYA +      + A  I  AH  DD
Sbjct: 85  AFCRARGVACSVEAADVPQYAKERRMSLETAARELRYAFLRRVRACVGAQAIAVAHHADD 144

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV       +  +G GL G+        +  + RP L C +E++ +      I    
Sbjct: 145 QAETVLQ-----HILRGAGLHGLVGMTPRTGD--VVRPLLACTKEELVAHCAAHGIEVRH 197

Query: 191 DPSN 194
           D +N
Sbjct: 198 DATN 201


>gi|218283935|ref|ZP_03489803.1| hypothetical protein EUBIFOR_02399 [Eubacterium biforme DSM 3989]
 gi|218215514|gb|EEC89052.1| hypothetical protein EUBIFOR_02399 [Eubacterium biforme DSM 3989]
          Length = 394

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 21/188 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR--- 79
           +VA SGG DSM LL  L+    D     I  + ++  H  R+TA  +   V D C +   
Sbjct: 5   VVACSGGPDSMALLDQLNKQGKD-----IVVAHVNYKH--RDTADRDENIVKDYCEKYDI 57

Query: 80  -LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            +R+ + V        +    A AR+ RYA   E A   +A ++  AH  DD +ET   +
Sbjct: 58  PVRVCYPV------HEKGNFQAWARDVRYAFFEEVADAFDAKILYVAHQMDDVIETYLFQ 111

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R+      GL        Y     I RP L   + +++ +  +  +S+  D SN  + 
Sbjct: 112 KNRNMICDWYGLKEKSIRQGYQ----IIRPLLNFTKSELQQYCNENGVSFGIDESNLTNH 167

Query: 199 FERVRVRR 206
           + R  +R 
Sbjct: 168 YTRNVIRH 175


>gi|53712709|ref|YP_098701.1| putative cell-cycle protein [Bacteroides fragilis YCH46]
 gi|61216469|sp|Q64WF9|TILS_BACFR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52215574|dbj|BAD48167.1| putative cell-cycle protein [Bacteroides fragilis YCH46]
          Length = 435

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +LV +SGG+DS+ LL  L S+          F         +E+ +DE  +V  +C    
Sbjct: 22  VLVTLSGGADSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I H   +   +K    +  AARE RY       K   A++I TAH  DD +ETV +
Sbjct: 76  VLLHIEHFDTTQYATKKHISIEMAARELRYEWFETLRKQREASVIATAHHKDDSVETVLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+      + N  I RP L   RE+I ++L   +  +  D +N  D
Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|297250385|ref|ZP_06864202.2| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768]
 gi|296839058|gb|EFH22996.1| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768]
          Length = 436

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 9/182 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+   + LH ++     G      + + H L   A     +  + C  L + 
Sbjct: 26  VALSGGLDSV---VLLHLLVRAGKKGGFIPKTVHIHHGLSPRADAWADFCQNYCDMLGVE 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K   G+ AAAR+ RYA  +E    +    +  AH  DDQ+ET  +   R  
Sbjct: 83  LETVKVCVEKNGLGIEAAARQKRYAAFAEKGFDV----LALAHHRDDQIETFMLAVARGG 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M     +  N  I RP L   R+DI  +  +  +   ED SN+D  + R R
Sbjct: 139 GLR--ALAAMPAVRPFGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAYLRNR 196

Query: 204 VR 205
            R
Sbjct: 197 FR 198


>gi|270159842|ref|ZP_06188498.1| tRNA(Ile)-lysidine synthase [Legionella longbeachae D-4968]
 gi|289165400|ref|YP_003455538.1| cell cycle protein MesJ [Legionella longbeachae NSW150]
 gi|269988181|gb|EEZ94436.1| tRNA(Ile)-lysidine synthase [Legionella longbeachae D-4968]
 gi|288858573|emb|CBJ12454.1| cell cycle protein MesJ [Legionella longbeachae NSW150]
          Length = 460

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 18/190 (9%)

Query: 21  HILVAVSGGSDSMGLLIAL--HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            ++V  SGG DS  LL AL  H +L D      K  A+ V+H +   A     +    C 
Sbjct: 19  QLIVGFSGGLDSTVLLHALAAHPILLD------KIVAVHVNHGINANADFWQEHCKQFCQ 72

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +L ++    S +  +    +   AR ARY++ S   K  +  ++   H  DDQ ETV ++
Sbjct: 73  KLGVSFRAQSVQFDRS-ANIEEGARIARYSVFSALVKEQDCLIL--GHHLDDQAETVLLQ 129

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R     G G+ G+     +    +  + RPFL   RE +  +     + W ED SN D
Sbjct: 130 LFR-----GAGVDGLAAIPEFAQFGFGRLFRPFLHYYREQLEHYAFLHQLDWVEDESNCD 184

Query: 197 DRFERVRVRR 206
             + R  +R+
Sbjct: 185 ITYSRNYLRQ 194


>gi|284929532|ref|YP_003422054.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A]
 gi|284809976|gb|ADB95673.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A]
          Length = 319

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 15/196 (7%)

Query: 15  SLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLRETAKDEVR 71
           SL+ P    ILVAVSGG DS+ LL  +  +       +IK+   +S+ HC      D   
Sbjct: 16  SLILPPKKRILVAVSGGQDSLCLLKIIMDL-------RIKWDWEVSIAHCDHGWPSDT-- 66

Query: 72  YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +SD   ++    ++  + K ++      + ARE RY ++ E A+  N T I+T HT  D
Sbjct: 67  GISDHVKKISEEWNIDFYLKRTQILKITESIAREWRYKVLLEVARENNFTAIVTGHTLSD 126

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV     R     G+ +      +   +NL   RP L   R +   F  Q N+   E
Sbjct: 127 LAETVLYNLIRGAGSHGLSVLTNTRPLTNSINL--VRPLLNTSRTETLFFCRQLNLPVWE 184

Query: 191 DPSNTDDRFERVRVRR 206
           D  NT+  + R R+R+
Sbjct: 185 DEVNTNFDYARNRIRK 200


>gi|254444811|ref|ZP_05058287.1| hypothetical protein VDG1235_3054 [Verrucomicrobiae bacterium
           DG1235]
 gi|198259119|gb|EDY83427.1| hypothetical protein VDG1235_3054 [Verrucomicrobiae bacterium
           DG1235]
          Length = 478

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 19/197 (9%)

Query: 22  ILVAVSGGSDSMG--LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78
           + VA SGG+DS+   +L+ L+   SDR  G ++   +  +H LR  A D +  +  ++C 
Sbjct: 33  LYVACSGGADSVFALMLVFLYLKNSDR-LGSLRV--LHFNHGLRGDASDGDAEFAKELCD 89

Query: 79  RLRIA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQLET 134
            L I    +   W  +  +    A  REAR     +      AT   ++T H  DD  ET
Sbjct: 90  GLSIPFLDAKADWAVALDKV-TEAIGREARLGFFRKATGASAATPAWVVTGHHADDVAET 148

Query: 135 VYMRSQRDYAEKGMGLSGMC---DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           + MR  R     G GL G+    +       +   RP L   R++I+S L    ISW ED
Sbjct: 149 MLMRLSR-----GSGLEGLTAPREVSKAGGGIHFLRPLLGFTRKEIQSTLEGCGISWRED 203

Query: 192 PSNTDDRFERVRVRRFV 208
            +N  DR  R R+R+ V
Sbjct: 204 ATNDSDRNYRARLRKSV 220


>gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum seropedicae SmR1]
 gi|300073983|gb|ADJ63382.1| PP-loop superfamily ATPase, implicated in cell cycle control,
           protein [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 9/193 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS  +L+ + +  +  + G  + + + V H L   A   + +    C++L 
Sbjct: 13  LAVAYSGGLDST-VLLWVAAQWARENGGTSRLAPLHVHHGLSPHADAWLAHAQACCAQLG 71

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   S          +G+  AAR ARYA +    +   A +++TAH  DDQ ETV ++  
Sbjct: 72  LVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLDDQAETVLLQLL 131

Query: 141 RDYAEKGMGLSGM--CDT---ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           R       GLSGM  C+T   +L D  L ++RPFL   R  + +     ++ W ED SN+
Sbjct: 132 RGSGLA--GLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSLKWIEDESNS 189

Query: 196 DDRFERVRVRRFV 208
           D R+ R  +R  V
Sbjct: 190 DPRYTRNALRHQV 202


>gi|218134795|ref|ZP_03463599.1| hypothetical protein BACPEC_02698 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990180|gb|EEC56191.1| hypothetical protein BACPEC_02698 [Bacteroides pectinophilus ATCC
           43243]
          Length = 522

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 37/218 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++V +SGG+DS+ LL+ L S+    +F   +  A+ V+H +R  E   DE+ +   +C R
Sbjct: 27  VVVGLSGGADSVSLLMVLGSLKERMAF---ELRALHVNHGIRGEEAMHDEL-FTKALCDR 82

Query: 80  LRIAHSVV---------SWKNSKPQTGLMAAARE-ARYALISEHAKTINA---------- 119
           L I    V             S  + G  A   E AR     E  KT++           
Sbjct: 83  LGIRLKTVHIDVPALVQETHMSSEEAGRHARQDEFARLCAEIEKEKTVDRESGQIPGQTG 142

Query: 120 --TLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLS------GMCDTILYDLNLWISRPFL 170
              ++  AH  DDQ ETV     R  A KG+ G+S      G CD +       I RP L
Sbjct: 143 RRVVVALAHHMDDQAETVLHNLVRGSALKGLAGMSPVNVMYGTCDGVR--TGYTIIRPLL 200

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             RR  I  +L   N  +C D +N  + + R R+R  +
Sbjct: 201 CVRRAAIEEWLRGHNQEYCTDSTNLGNDYTRNRLRNTI 238


>gi|330830699|ref|YP_004393651.1| tRNA(Ile)-lysidine synthetase [Aeromonas veronii B565]
 gi|328805835|gb|AEB51034.1| tRNA(Ile)-lysidine synthetase [Aeromonas veronii B565]
          Length = 452

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 11/187 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL+   +    R  G +  SA+ V H L   A + V +   VC +L 
Sbjct: 22  LLVAFSGGLDSTLLLVL--AAQYAREHG-LPLSALHVHHGLSPHADEWVAHCEAVCQQLA 78

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +   V  V+      ++ L A AR ARY  ++  A+      ++TAH  DDQLET+ +  
Sbjct: 79  VELLVERVTLIRGNGES-LEAQARTARYQRLT--ARMREGEWLLTAHHQDDQLETLLLAL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    +  GL+G+  +  +   L + RP L   R ++          W ED SN +  +
Sbjct: 136 KRGAGLR--GLAGILPSQPFAGGL-LLRPLLDMSRAELADAAASLPFGWVEDESNQEVSY 192

Query: 200 ERVRVRR 206
           +R  +R+
Sbjct: 193 DRNFLRQ 199


>gi|257470195|ref|ZP_05634286.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185]
 gi|317064411|ref|ZP_07928896.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185]
 gi|313690087|gb|EFS26922.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185]
          Length = 444

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +  + +F  +    + ++H LR E +  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLMKLRENINFDMV---LVHINHLLRGENSDGDEKFSIEYGKKK 79

Query: 80  -LRIAHSVVSWKNSKPQTGLM--AAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L++    ++        GL    A R+ARY L  E  + I A  I  AH  DDQLET  
Sbjct: 80  GLQVFSRKINITALGKDMGLTLEEAGRKARYDLFKEVFEKIGANKIALAHNKDDQLETFM 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G GL G+ + I+   +++I RP     ++DI  +L + +I +  D +N +
Sbjct: 140 FRLTR-----GAGLEGL-EGIVAKRDVYI-RPISEIYKKDIVEYLNKNSIPYRIDETNFE 192

Query: 197 DRFERVRVR 205
           + F R  +R
Sbjct: 193 NEFTRNSIR 201


>gi|217967258|ref|YP_002352764.1| tRNA(Ile)-lysidine synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336357|gb|ACK42150.1| tRNA(Ile)-lysidine synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 455

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 17/175 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           I+++VSGGSDS    IAL  +L + S   G +K   + +DH +R+    E   + D  + 
Sbjct: 31  IILSVSGGSDS----IALSEILYNLSPILG-LKLHIVYIDHHVRKNTYKEKELIKDYATS 85

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I +S +   +  P+       R+ RY  + + ++ +N   I   HT DDQ+ET+ M  
Sbjct: 86  RNIPYSFL---DIYPKDFTEKTLRDERYKALIKFSEELNFNKIALGHTLDDQIETIIMN- 141

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                 KG G+ G+C  I    + +I RP +   + ++  +  ++++ + +D +N
Sbjct: 142 ----FFKGYGMEGLC-GIPVKRDKFI-RPIIILSKSEVIEYCERKSLKYIDDFTN 190


>gi|255659245|ref|ZP_05404654.1| tRNA(Ile)-lysidine synthase [Mitsuokella multacida DSM 20544]
 gi|260848699|gb|EEX68706.1| tRNA(Ile)-lysidine synthase [Mitsuokella multacida DSM 20544]
          Length = 466

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 90/195 (46%), Gaps = 17/195 (8%)

Query: 7   ESVRFF-VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63
           E+VR+   + L++P  H+LVA SGG DS+     L  +L  R   ++  +    +H +R 
Sbjct: 4   EAVRYARAQDLLHPGMHVLVACSGGPDSL---ALLDMLLQLRRRFRLVLTVAHYEHGIRG 60

Query: 64  ETAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++ ++ R+V   C        I H  V          +  AARE RY  + +  +   A
Sbjct: 61  ASSAEDARFVDAFCREREVPCFIGHGDVPAFAKAQGKSVELAARELRYVFLWQTLERCGA 120

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            ++ TAH  DDQ ETV MR  R     G GL G+    +        RP L  RREDI  
Sbjct: 121 DVLATAHHADDQAETVLMRILR-----GTGLDGL--AAMKPREGKKIRPLLFARREDILD 173

Query: 180 FLLQRNISWCEDPSN 194
           +  +R ++   D +N
Sbjct: 174 YCRERGLTPRHDATN 188


>gi|163841946|ref|YP_001626351.1| tRNA(Ile)-lysidine synthetase [Renibacterium salmoninarum ATCC
           33209]
 gi|162955422|gb|ABY24937.1| tRNA(Ile)-lysidine synthetase [Renibacterium salmoninarum ATCC
           33209]
          Length = 363

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 9/189 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ L        + +SF   +  AI VDH L++ +    +  +       
Sbjct: 47  VLVACSGGPDSLALAAVAAFFNNRKSF---RVGAIIVDHGLQDGSAAVAQQTAAKLRAFG 103

Query: 82  IAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +A   +   +  + P  G   +AR ARY  +   A    A  ++  HT DDQ E V +  
Sbjct: 104 LAPVEIRTVDVVAGP-GGPEDSARVARYGALEAAAVEHGAVAVLLGHTLDDQAEQVMLGL 162

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSGM     +   + + RPFL   RE+  +     ++    DPSN+D  F
Sbjct: 163 ARGSGTRS--LSGMPARREFPGGVHL-RPFLPLSREETEAICAVESLEPWRDPSNSDPGF 219

Query: 200 ERVRVRRFV 208
            R R+R  V
Sbjct: 220 TRSRIRHDV 228


>gi|39938615|ref|NP_950381.1| hypothetical protein PAM_129 [Onion yellows phytoplasma OY-M]
 gi|61216552|sp|Q6YR87|TILS_ONYPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|39721724|dbj|BAD04214.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 436

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 12/186 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++AVSGG DSM LL   H +++     KIK   +  +H  R     +   V   C  L+ 
Sbjct: 17  IIAVSGGVDSMALL---HCLVAQ----KIKLQVVHFNHLARPNVWKDKELVQSYC--LQN 67

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           +     ++ + PQ    A AR  R   + + A       I+TAH  DD  ET+  +  R 
Sbjct: 68  SLCFHYFELNCPQKNFQAQARLLRQQKLMQIATKHQTPFILTAHHLDDLAETILQKITR- 126

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            +   +G SGM     +   +++ +PFL   +  I S+     I + ED +N +  ++R 
Sbjct: 127 -SSTLLGYSGMQIQTSWQDFIFL-KPFLYVPKAKIISYAAFYQIPFLEDYTNQNFTYQRN 184

Query: 203 RVRRFV 208
           ++R  V
Sbjct: 185 QIRHQV 190


>gi|157372000|ref|YP_001479989.1| tRNA(Ile)-lysidine synthetase [Serratia proteamaculans 568]
 gi|189035972|sp|A8GIC1|TILS_SERP5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157323764|gb|ABV42861.1| tRNA(Ile)-lysidine synthetase [Serratia proteamaculans 568]
          Length = 436

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 121/290 (41%), Gaps = 27/290 (9%)

Query: 12  FVRSLVYPAHILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
             R L    H+LVA SGG DS   + LL+ L   L D     ++  A+ V H L   A  
Sbjct: 10  LARQLGAHRHLLVAFSGGLDSSVLLHLLVGLRQQLPD-----LQLRAVHVHHGLSAFADQ 64

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            V +    C   ++   VV       Q G + AA  A            + TL +TA   
Sbjct: 65  WVTHCRQQCVAWQLP-LVVQHVQVDSQQGGIEAAARAARYSAFASTLAADETL-LTAQHL 122

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET  +  +R     G  LS M        N  + RP L   R+ + ++  Q  +SW
Sbjct: 123 DDQCETFLLALKRGSGPAG--LSAMAAQTSLGNNH-LLRPLLGHSRQQLEAYAQQHQLSW 179

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVH 245
            ED SN D RF+    R F+R   L  L  +   F     +  +  A    L+ + L   
Sbjct: 180 IEDDSNQDPRFD----RNFLRLQVLPLLNQRWPHFAAATARSASLCAEQEQLLDELLAEQ 235

Query: 246 MRSII----AISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           + +++    A++ D +L   +   F LLR   A+ G  +++P    ++R+
Sbjct: 236 LHNLLDEDRALAIDGLLTCSAARRFALLRRWIALFG--VTMPSREQLQRL 283


>gi|317123757|ref|YP_004097869.1| tRNA(Ile)-lysidine synthetase [Intrasporangium calvum DSM 43043]
 gi|315587845|gb|ADU47142.1| tRNA(Ile)-lysidine synthetase [Intrasporangium calvum DSM 43043]
          Length = 333

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 11/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DS+  L A  +  + RS   ++  A+ VDH L+E +       +  C  L 
Sbjct: 28  VLVACSGGTDSL-ALAAALAFEAPRS--GLRGGAVVVDHGLQEGSGAVAEQAAQTCRELG 84

Query: 82  IAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++   V     +   +GL A AR ARY  I   A  + A+ ++  HT DDQ E V +   
Sbjct: 85  LSPVEVMVAEVRITGSGLEADARAARYKAIDAVADRVGASQVLLGHTRDDQAEQVLLGLS 144

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +   LSGM          ++ RP L   R    +      +    DP N D  F 
Sbjct: 145 RGSGAR--SLSGMP----LRRGRFV-RPLLALPRATTTAACEALGVQPWHDPHNEDPSFR 197

Query: 201 RVRVRRFV 208
           RVR RR +
Sbjct: 198 RVRARRLL 205


>gi|33862207|ref|NP_893768.1| hypothetical protein PMM1651 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|61216598|sp|Q7UZL1|TILS_PROMP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33634425|emb|CAE20110.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 336

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 24/201 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV--- 76
           A++L+AVSGG DSM LL  ++ + +  ++       ++V H   +  K   +Y  ++   
Sbjct: 33  ANLLIAVSGGQDSMALLNLINDMKTQHNW------FVNVWHGDHQWHKKSAKYALELKSY 86

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI---NATLI----MTAHTFD 129
           C++  I  S    + +K        AR+ RY  +SE A  +   N   I    +T HT  
Sbjct: 87  CNKKNI--SFFFDQANKNNISSEEKARDWRYKKLSERANQLLIENQKEIDIYLLTGHTNT 144

Query: 130 DQLETVYMRSQR--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           D  ET  +   R  +YA    GLS +    L   ++++ RP L   RED + F   +NI 
Sbjct: 145 DNAETFLLNLARGSNYA----GLSNINKKRLLKHHIFLIRPLLIFSREDTKKFCQLQNIP 200

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
             EDP+N D   +R  VR+ +
Sbjct: 201 IWEDPTNCDLTIKRNIVRKEI 221


>gi|206901988|ref|YP_002250586.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Dictyoglomus
           thermophilum H-6-12]
 gi|206741091|gb|ACI20149.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Dictyoglomus
           thermophilum H-6-12]
          Length = 455

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 19/176 (10%)

Query: 22  ILVAVSGGSDSMGL---LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           I+++VSGGSDS+ L   L  L S+L+      +    + +DH +R     E   + D  +
Sbjct: 31  IILSVSGGSDSIALSEILYNLSSILN------LNLYIVYIDHHVRSNTYIEKEIIKDYAT 84

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              I +S +    +      +   RE RY  + + ++ I    I   HT DDQ+ET+ M 
Sbjct: 85  SRSIPYSFLDIYTTDFTEKTL---REERYKALIKFSEKIKFNKIALGHTLDDQIETIIMS 141

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                  KG G+ G+C       N    RP +   +E+I  +  ++N+ + +D +N
Sbjct: 142 -----FFKGYGIEGLCGIPTKRDNF--IRPIIILSKEEILEYCKRKNLKYVDDFTN 190


>gi|218130045|ref|ZP_03458849.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697]
 gi|217987765|gb|EEC54092.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697]
          Length = 426

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +++A+SGG+DS+ LL  L ++  +       F         +E+ +DE  +V  +C++  
Sbjct: 22  VIIALSGGADSVALLCLLQTLGYNCEAAHCNFHLRG-----KESDRDEA-FVCQLCAKRQ 75

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I H        +    +  AARE RY    E  +   A +I  AH  DD +ET+ +
Sbjct: 76  VPLHIVHFNTVRTAEERHISIEMAARELRYEWFEEIRRKSGANVIAVAHHRDDSVETLLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+    +   N  I RP L   R++I ++L +    +  D +N  D
Sbjct: 136 NLIR-----GTGINGL--RGIRPKNGHIVRPLLCLDRKEIINYLNRTGQDYVTDSTNLQD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|325299729|ref|YP_004259646.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170]
 gi|324319282|gb|ADY37173.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170]
          Length = 430

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 19/189 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           I+VA+SGG+DS+ LL  L         G     A   +  LR    D +  +V  +C++L
Sbjct: 22  IVVALSGGADSVALLRVLLQ-------GGYTCVAAHCNFHLRGKESDRDAAFVQTLCTKL 74

Query: 81  RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           ++   +  +         +  +  AARE RYA   E  K   A +I  AH  DD +ET  
Sbjct: 75  QVPLHIHDFDTKSYAEAHRVSVEMAARELRYAWFEEVRKQERAQVIGVAHHRDDSVETFL 134

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G+ G+   +    N  I RP L   R DI +FL      +  D +N  
Sbjct: 135 LNLVR-----GTGIQGLKGIV--PKNGAIVRPLLDVDRTDILAFLASIGQDYVMDSTNQR 187

Query: 197 DRFERVRVR 205
           D F R ++R
Sbjct: 188 DEFTRNKLR 196


>gi|240275421|gb|EER38935.1| PP-loop family protein [Ajellomyces capsulatus H143]
          Length = 688

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG+DSM L      ++S+R    ++     VDH  R  + DE   V+    
Sbjct: 39  PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFVVDHLARGGSTDEAHKVAGWLR 98

Query: 79  RLRIAHSVVS--WKNSKPQTGLM---AAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+++  W +    + L      AR+ RY ++ +  K  N   +   H  DD +E
Sbjct: 99  ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMC 154
           TV  R  R    +  GL G+ 
Sbjct: 159 TVLSRLTRG-QRQATGLKGVA 178


>gi|256826669|ref|YP_003150628.1| tRNA(Ile)-lysidine synthetase [Cryptobacterium curtum DSM 15641]
 gi|256582812|gb|ACU93946.1| tRNA(Ile)-lysidine synthetase [Cryptobacterium curtum DSM 15641]
          Length = 378

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 92/195 (47%), Gaps = 25/195 (12%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKD-EV 70
           R+LV P   +L+ VSGGSDS  L   L S LS  + G++   + + V+HCLR  A D + 
Sbjct: 18  RALVLPDQPVLLMVSGGSDSTALAY-LTSDLS--AAGRVGPLALVHVNHCLRGDASDGDA 74

Query: 71  RYVSDVCSRLRIAHSVVSWKNSK--PQTG--LMAAAREARYALISEHAKTINATL----- 121
            +V  +   L + +       +    QTG  L A AR  RYA   E      A L     
Sbjct: 75  AFVRHLAEALELPYFQYDIDIAALVEQTGENLEAVARSERYAAAQEALSNFCAQLNFPTS 134

Query: 122 ---IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I  AHT +D++E  YMRS       G G  G   ++ Y +N  I RP L   R+D+R
Sbjct: 135 SGRIFVAHTRNDRVENFYMRSI-----VGCGPGGF-RSMRY-INGCIVRPLLDVSRDDLR 187

Query: 179 SFLLQRNISWCEDPS 193
            +L +R +    D S
Sbjct: 188 DYLRRRALDAQNDAS 202


>gi|324991855|gb|EGC23778.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK405]
 gi|324996255|gb|EGC28165.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK678]
 gi|327458479|gb|EGF04829.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1]
 gi|327463845|gb|EGF10161.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1057]
 gi|327471619|gb|EGF17062.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK408]
          Length = 425

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +L+AVSGG DSM LL  L  ++S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IVSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +  +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I + ED SN  + + R R+R
Sbjct: 168 --PDIQYFEDSSNFQNDYLRNRIR 189


>gi|271970343|ref|YP_003344539.1| tRNA(Ile)-lysidine synthetase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270513518|gb|ACZ91796.1| tRNA(Ile)-lysidine synthetase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 337

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 87/187 (46%), Gaps = 16/187 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVRYVSDVCSR 79
           +LVA SGG+DS+ L   L  V       +   SA  ++VDH L+E + D    V  +   
Sbjct: 27  VLVACSGGADSLALAAGLGFVAP-----RAGLSAGLLTVDHGLQEGSPDRAAGVVRLAPA 81

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +  +     +     G  AAAREARYA +SE A  + A  ++  HT DDQ ETV +R 
Sbjct: 82  FGLDPAEALSVSVGTSGGPEAAAREARYAALSEAAVRLGAAAVLLGHTRDDQAETVLLRL 141

Query: 140 QRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            R    +   L+GM     LY       RP L   R    +      +S  +DP N D R
Sbjct: 142 ARGSGTR--SLAGMPARAGLY------RRPLLELGRRTTVAACAALGLSPWDDPHNLDPR 193

Query: 199 FERVRVR 205
           + RVRVR
Sbjct: 194 YTRVRVR 200


>gi|297180756|gb|ADI16963.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [uncultured Sphingobacteriales bacterium
           HF0010_19H17]
          Length = 441

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 25/195 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDVC 77
           ILVA+SGG DS+ LL  +H          +    +   HC   LR E +  + ++V ++C
Sbjct: 20  ILVALSGGLDSVALLYLMH----------MSGFYVEAAHCNFNLRGEESDGDAQFVKELC 69

Query: 78  SRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           + L +   V ++  +         +  AAR+ RY    E         I TAH  DDQ+E
Sbjct: 70  AALGLPVHVKNFDTAAHANDFGVSIQMAARDLRYVWFEELRSKNGLAYIATAHHRDDQVE 129

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G GL GM    +  L   I RP L   R  +  ++ +   ++ ED S
Sbjct: 130 TLLINLSR-----GTGLKGMQG--MKSLQNKIIRPLLFTDRSALEVWMQKEKHAYREDSS 182

Query: 194 NTDDRFERVRVRRFV 208
           N   ++ R ++R  V
Sbjct: 183 NASIKYSRNKLRHQV 197


>gi|269960608|ref|ZP_06174980.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834685|gb|EEZ88772.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 448

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 17/197 (8%)

Query: 22  ILVAVSGGSDSMGLLIALH-----SVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVS 74
           I++A SGG DS  LL  L      + + ++S G    S  A+ V H L   A +      
Sbjct: 22  IVLAFSGGVDSRLLLELLSRYRQANSIDNQSAGSKSVSCHAVYVHHGLSSNADNWANQCL 81

Query: 75  DVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               +  I+ SV       NS     L+A  REARY  +++H +     L++T    DDQ
Sbjct: 82  VWAQQAGISCSVEHVNLDINSGESIELLA--REARYQALAKHIQM--GDLLLTGQHADDQ 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET  +  +R    KG  LS M +++ +     + RP L  +RE I +   ++ +SW ED
Sbjct: 138 VETFLLALKRGSGPKG--LSSMAESMPFADGTLV-RPLLAVKREQIEAVAKEQKLSWVED 194

Query: 192 PSNTDDRFERVRVRRFV 208
            SN D R++R  +R  +
Sbjct: 195 ESNQDIRYDRNFLRHHI 211


>gi|325091259|gb|EGC44569.1| PP-loop family protein [Ajellomyces capsulatus H88]
          Length = 688

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG+DSM L      ++S+R    ++     VDH  R  + DE   V+    
Sbjct: 39  PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFVVDHLARGGSTDEAHKVAGWLR 98

Query: 79  RLRIAHSVVS--WKNSKPQTGLM---AAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+++  W +    + L      AR+ RY ++ +  K  N   +   H  DD +E
Sbjct: 99  ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMC 154
           TV  R  R    +  GL G+ 
Sbjct: 159 TVLSRLTRG-QRQATGLKGVA 178


>gi|118580663|ref|YP_901913.1| tRNA(Ile)-lysidine synthetase [Pelobacter propionicus DSM 2379]
 gi|118503373|gb|ABK99855.1| tRNA(Ile)-lysidine synthetase [Pelobacter propionicus DSM 2379]
          Length = 485

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 89/194 (45%), Gaps = 25/194 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----DHCLR--ETAKDEVRYVSD 75
           +++A+SGG+DS         VL D   G  +FS   V    +H LR  E+  DE+ +   
Sbjct: 26  VILALSGGADS--------CVLLDILAGLTEFSPCLVIAHLNHQLRGAESDGDEL-FCRS 76

Query: 76  VCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  R     R     V+    +    L  A R AR   + + A++ +AT I  AH  DDQ
Sbjct: 77  LAERYGLPFRSRSLDVAALARRQGLNLEDAGRRARLEFLEDVARSFHATAIALAHHADDQ 136

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV MR  R     G G++G+           I RP L  RR +I ++L  R +   ED
Sbjct: 137 AETVLMRLLR-----GSGMTGLRGMSFRGPGGRI-RPLLNSRRCEIDAYLRARGLEHRED 190

Query: 192 PSNTDDRFERVRVR 205
            SN D  F R R+R
Sbjct: 191 ASNRDTAFLRNRIR 204


>gi|315608203|ref|ZP_07883195.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574]
 gi|315250172|gb|EFU30169.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574]
          Length = 467

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 88/191 (46%), Gaps = 25/191 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77
           +VA+SGG+DS+ LL+ L      +  G     ++   HC   LR  E+ +DE   VS   
Sbjct: 24  IVALSGGADSVALLLIL------KELG----YSVEAAHCNFNLRGEESKRDEDFCVSLCA 73

Query: 78  SR---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           SR   L  AH          +  +  AAR  RY    +    I A  I  AH  +D +ET
Sbjct: 74  SRGIKLHRAHFDTFEYAHLHKVSIEMAARNLRYHYFDQLRLAIGAKGICVAHHLNDNVET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +   R     G G+ G+  T +   N ++ RP L  R E+IR +L   N ++  D +N
Sbjct: 134 LLLNLIR-----GTGIQGL--TGMASRNGFVLRPLLDVRHEEIREYLHSINQAFVIDSTN 186

Query: 195 TDDRFERVRVR 205
            +D   R ++R
Sbjct: 187 LEDDVLRNKIR 197


>gi|163814651|ref|ZP_02206040.1| hypothetical protein COPEUT_00802 [Coprococcus eutactus ATCC 27759]
 gi|158450286|gb|EDP27281.1| hypothetical protein COPEUT_00802 [Coprococcus eutactus ATCC 27759]
          Length = 497

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 17/192 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79
           H +  VSGG+DS+ L+  L  +     +  I+   + ++H +R  A D +  YV ++C +
Sbjct: 37  HCVCGVSGGADSVSLITVLVRLCG---YLGIELHVVHINHMIRGAAADSDQEYVEELCRK 93

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA--TLIMTAHTFDDQLE 133
             ++ +     V    S     +  A R ARY       +       +I  AH  +D  E
Sbjct: 94  YGVSCNSYNIDVQTMASDRGFTVEEAGRLARYDAFDTVRRQYEGEGCVIAVAHNRNDVAE 153

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV     R     G G+ G+    +  +   I RP L C R +I  +L +  I +C D +
Sbjct: 154 TVIFNMAR-----GTGMGGI--KGIAPVRENIVRPLLGCDRSEIEGYLDRMGIPYCTDAT 206

Query: 194 NTDDRFERVRVR 205
           N +D + R ++R
Sbjct: 207 NNEDDYTRNKIR 218


>gi|150392226|ref|YP_001322275.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149952088|gb|ABR50616.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 467

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           ++VA+SGG DS+ LL  L  +   ++  K++     ++H  R   A+ + +YV++ C +L
Sbjct: 21  VVVAISGGPDSVCLLHVLSRL---KAAYKLEIYGAHLNHNFRGMDAQMDAQYVANFCEQL 77

Query: 81  RIAHSVVSWK--NSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V S        + GL +  A R  RY    E  + + A+ I  AH  +DQ ETV 
Sbjct: 78  NILCFVKSMDVLGYAEKNGLSSEEAGRVLRYEFFEEIGQKVGASKIAVAHNQNDQAETVL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G G+ G+  T +      I RP L   R  I  +     +S   D +N+ 
Sbjct: 138 MRLLR-----GTGIQGL--TAIRHKRDKIIRPLLETDRGKIEDYCETYELSPRIDQTNSQ 190

Query: 197 DRFERVRVR 205
             + R ++R
Sbjct: 191 PIYHRNKIR 199


>gi|224541459|ref|ZP_03681998.1| hypothetical protein CATMIT_00628 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525617|gb|EEF94722.1| hypothetical protein CATMIT_00628 [Catenibacterium mitsuokai DSM
           15897]
          Length = 382

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 15/157 (9%)

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSV-VSWKNSKP----QTGLMAAAREARYALISE 112
           V++ LR   +++ + V D C     AH++   +K   P    +      AR+ RYA   E
Sbjct: 17  VNYNLRNDTEEDYKVVHDYCK----AHNIPFYYKEFTPDDYVKGNFQTVARDMRYAFYQE 72

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLR 171
             KT     +   H  DD +ET+YM  +RD     +G+  + C      L + I RP L 
Sbjct: 73  VYKTEQCDALCLGHQKDDVIETIYMHLERDSHPDYLGIQEVSC-----RLGMTIIRPLLH 127

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             ++D+R +    +I + +D +N    F R R+R  +
Sbjct: 128 VTKQDLRDYCDDHHILFHDDYTNFQTEFTRDRIRNTI 164


>gi|297588663|ref|ZP_06947306.1| PP-loop family protein [Finegoldia magna ATCC 53516]
 gi|297574036|gb|EFH92757.1| PP-loop family protein [Finegoldia magna ATCC 53516]
          Length = 451

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 20/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG+DS+ L   L+ +  D  F   +     ++H  R+TA  +  +  ++     
Sbjct: 23  ILIGLSGGADSVFLFNVLYQLKDDLDF---EIKTCHINHSYRDTAIRDENFSREISEEKN 79

Query: 82  IAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I            S  NS     L  + R  RY   +E  ++     I  AH  DDQ+ET
Sbjct: 80  IQFFSKKVDMKQFSLDNS---ISLEDSGRILRYNCFNEILESEKLNKIAVAHHLDDQVET 136

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            ++   R     G G+ G+C  I Y  N  I RP L   + +I ++L + NI +  D +N
Sbjct: 137 FFLHLFR-----GSGIDGLC-GIQY-RNKDIIRPLLDVSKSEILTYLDENNIEYVTDETN 189

Query: 195 TDDRFERVRVR 205
                +R ++R
Sbjct: 190 FVADVQRNKIR 200


>gi|329955642|ref|ZP_08296550.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056]
 gi|328526045|gb|EGF53069.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056]
          Length = 423

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 23/205 (11%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           I   +FF+     PA  ILVA+SGG+DS+ LL  L ++  +       F      H   E
Sbjct: 10  ISQKKFFM-----PADKILVALSGGADSVALLCLLQTLGYECEAAHCNF------HLRGE 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C++ ++   +V +       +    +  AARE RY    +     NA 
Sbjct: 59  ESDRDETFVRQLCAKRQVPLHIVHFDTLRTAEERHISIEMAARELRYEWFEKIRTKSNAN 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET+ +   R     G G++G+    +   N  I RP L   R +I ++
Sbjct: 119 VIAVAHHQDDSVETLLLNLIR-----GTGINGL--RGIRPKNGHIVRPLLCLDRNEIINY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L +    +  D +N  D + R ++R
Sbjct: 172 LNRIGQDYVTDSTNLQDEYTRNKIR 196


>gi|306826400|ref|ZP_07459714.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes ATCC 10782]
 gi|304431395|gb|EFM34390.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes ATCC 10782]
          Length = 428

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 89/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L+AVSGG DSM LL  L+ +  D+   KI+     V+H  R  +  E  Y+     + 
Sbjct: 22  HVLIAVSGGVDSMNLLHFLY-LFQDKL--KIRIGIAHVNHKQRSESDLEEAYLKCWAKKH 78

Query: 81  RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +++      G+ +  AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 79  DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 184 FLRNRVR 190


>gi|291279418|ref|YP_003496253.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1]
 gi|290754120|dbj|BAI80497.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1]
          Length = 419

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 20/198 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++VA SGG DS+ +L   H ++ ++    I    A  ++H +R  + D+ ++  + C +L
Sbjct: 22  LIVAFSGGKDSLSIL---HFLVKNKDLLSISDIIACHINHQIRPDSDDDEKFAKEFCDKL 78

Query: 81  RIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +   + ++K        K +  +  AAR  RY  + +    I    I+TAH  DD +E 
Sbjct: 79  NV--KIYTYKIDVFDYVKKYKVSIEEAARILRYKKLYDLLNDIKYDFIVTAHHKDDLIEN 136

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            ++R  R      +    + D +       I RP L   RE I  ++    + +  D SN
Sbjct: 137 FFIRVFRGTPIYNLSGFNINDDV-------IKRPLLNINRECIEEYIDYYQLPFVVDKSN 189

Query: 195 TDDRFERVRVR-RFVRDI 211
            D+++ R  VR + V++I
Sbjct: 190 FDEKYLRNWVRNKIVKEI 207


>gi|224532113|ref|ZP_03672745.1| tRNA(Ile)-lysidine synthetase [Borrelia valaisiana VS116]
 gi|224511578|gb|EEF81984.1| tRNA(Ile)-lysidine synthetase [Borrelia valaisiana VS116]
          Length = 440

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 23/205 (11%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   L+          A    H +R      
Sbjct: 14  KFYKKNFLSKDRVIVAFSGGADSTTLLLNLKYYLN------NNIIAFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCS----RLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATL 121
            E+ +V   C      L+I    V  K+   + G  +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIDLKIKKCDVDIKSESVRLGVSIEELARKFRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I  AH  +DQ+ET+ MR  Q  + +   GL+G+ D     +N  I RP L   R +I +F
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLD---GLAGIPD-----VNRNIIRPLLEVSRLEIENF 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
           L   NIS+  D +N  + + R RVR
Sbjct: 180 LSLNNISFFVDSTNAQNLYLRNRVR 204


>gi|163750367|ref|ZP_02157607.1| cell cycle protein MesJ [Shewanella benthica KT99]
 gi|161329857|gb|EDQ00843.1| cell cycle protein MesJ [Shewanella benthica KT99]
          Length = 467

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 13/186 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +++A SGG DS  L + L      R   + ++  + V H L + A     +V+   SR
Sbjct: 29  AKLVLAYSGGVDSELLALGLSEFA--REHHEYRYLLVHVHHGLSDHAD---AWVAHCESR 83

Query: 80  LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                  +S K    ++ P+  + A AR ARY  +    +  +A  ++TAH  DDQLETV
Sbjct: 84  AEAYGLAISIKRVVVDTGPRKSVEAEARNARYDAMRSQMEPGDA--LLTAHHLDDQLETV 141

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R    KG+   G       D  L   RP L   RE I +      +    D SN+
Sbjct: 142 LLALTRGLGPKGLAAMGSMQVFGKDKQLI--RPLLSISRELIEAKAKAVGLVHITDESNS 199

Query: 196 DDRFER 201
           DD+++R
Sbjct: 200 DDKYDR 205


>gi|149921066|ref|ZP_01909525.1| helix-turn-helix, Fis-type [Plesiocystis pacifica SIR-1]
 gi|149818070|gb|EDM77527.1| helix-turn-helix, Fis-type [Plesiocystis pacifica SIR-1]
          Length = 362

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 15/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DS+  L  L  VL +RS G +  S   VDH LR  + DE   V  +   L 
Sbjct: 43  LLVACSGGADSVATLGLL--VLLERSEG-LTLSVGHVDHGLRPESADEAELVRALAEGLG 99

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V   + ++   GL A AR AR   +   A+   A  I+ AHT  DQ ET+ M    
Sbjct: 100 LPCFVERAELAR-GPGLPARARAARRGALEAMAEQAGADAIVLAHTATDQAETMLM---- 154

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            +A +G GL G+    + D   W+ RP L   R   R       + + +DP+N D    R
Sbjct: 155 -HATRGAGLVGLAAMPVLD-GPWL-RPVLDLTRMQTRELAELLELPFVDDPTNED----R 207

Query: 202 VRVRRFVR 209
            ++R ++R
Sbjct: 208 EQLRTWLR 215


>gi|328945185|gb|EGG39340.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1087]
          Length = 425

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L  + S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +  +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L  R+ D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFRKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I   ED SN  + + R R+R
Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189


>gi|300691851|ref|YP_003752846.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum PSI07]
 gi|299078911|emb|CBJ51572.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum PSI07]
          Length = 474

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 101/214 (47%), Gaps = 15/214 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +   FV S   P  + VA+SGG DS   L+   +   D +   ++  A+ V H L+  
Sbjct: 24  VAACAAFVVSGGAPT-VAVALSGGRDSA-ALLHAAAAWRDVAGAPVRLVALHVHHGLQAD 81

Query: 66  AKD-EV---RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           A   EV   R  + V +   +    VS    +   G+  AAREARYA +        ATL
Sbjct: 82  ADAWEVACARMAAAVGAEFHVRRVRVSADAGR---GIEEAAREARYAALDALCAEAGATL 138

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSF 180
           ++TAH  DDQ ETV ++  R     G GL G+    +     + + RP+L   R DI ++
Sbjct: 139 LLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMARQRRVTLLRPWLDVPRSDIDAY 193

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
                ++W EDPSN D R+ R  +R  +  +  H
Sbjct: 194 ARAHALAWVEDPSNDDARYARNALRPLLAGMAGH 227


>gi|78780128|ref|YP_398240.1| hypothetical protein PMT9312_1743 [Prochlorococcus marinus str. MIT
           9312]
 gi|78713627|gb|ABB50804.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 336

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 20/199 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSDV 76
           ++I+++VSGG DSM LL  ++ +       K+   +ISV   DH   E +      +   
Sbjct: 33  SNIVISVSGGQDSMALLTLINDL------KKLHNWSISVWHGDHQWHEKSSLYALELKSF 86

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTFD 129
           C    I+      K  K        ARE RY  + E AKT+           ++T HT  
Sbjct: 87  CEGKNISFYFDQAK--KENVFTEEKAREWRYKKLCERAKTLLKKDQGGGDIYLLTGHTSS 144

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  ET  +   R       GLS +    L +  +++ RP L   RED + F     I   
Sbjct: 145 DNAETFILNLSR--GSNFTGLSNIESKRLIENKIFLIRPILIFSREDTKQFCNDMKIPVW 202

Query: 190 EDPSNTDDRFERVRVRRFV 208
           EDP+N+D + +R  VR+ +
Sbjct: 203 EDPTNSDLKLKRNLVRKKI 221


>gi|323486908|ref|ZP_08092224.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum
           WAL-14163]
 gi|323691956|ref|ZP_08106205.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323399771|gb|EGA92153.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum
           WAL-14163]
 gi|323503965|gb|EGB19778.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 246

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 18/211 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           I V +SGG DS+ LL ALH +   + F   + + SAI+VD          VR    +CS 
Sbjct: 26  IAVGISGGKDSLTLLYALHGL---KRFYPNEFELSAITVDLGFENFDLSPVR---SLCSE 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L +  +VV          ++ ++   A   + R   ++E AK +    I  AH  DD +E
Sbjct: 80  LSVPFTVVPTDIGKILFETRKESNPCALCAKMRKGALNETAKQMGCNKIAYAHHRDDLIE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +        +G   +    T L    L + RP +     D+  F  + ++  C++P 
Sbjct: 140 TMLL----SLIYEGRFYAFSPKTFLDRTELTVIRPMIYVSEADVIGFKNRFSLPVCKNPC 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
             D + +R  V++  + ++L A  +K + F 
Sbjct: 196 PVDGKTKREYVKQLTKQLNLQAPGVKERLFH 226


>gi|323350840|ref|ZP_08086499.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66]
 gi|322123014|gb|EFX94717.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66]
 gi|325686488|gb|EGD28517.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK72]
          Length = 425

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L  V S +    I+ +   V+H 
Sbjct: 6   FLKKLQEKKYFQDH----RKVLVAVSGGLDSMTLLQLL--VDSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +  +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I + ED SN  + + R R+R
Sbjct: 168 --PDIQYFEDSSNFQNDYLRNRIR 189


>gi|146420868|ref|XP_001486387.1| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 471

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 14/189 (7%)

Query: 19  PAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P  + +A+SGG DSM L  L++ +  + + S   ++  +I++DH  R  ++ E + V+ V
Sbjct: 23  PRRLAIALSGGVDSMCLAYLLSQYKQVYEPS---LELHSITIDHGYRSDSEIEAQKVAQV 79

Query: 77  CSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                I  SV   K   N    +     AR  RYA      +  N   ++ AH  DDQ+E
Sbjct: 80  VQNWGILPSVSRLKYSCNPAKISNFEEVARTMRYAEFERFCRGNNIEGLLVAHNLDDQIE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSFLLQRNIS 187
           T   R +++ +  G+       T+    N      + + RP L+  + ++ S  +   I 
Sbjct: 140 TFIQRLRQNSSIFGLAGLKRATTLPVATNEPNERPIPLFRPLLQFPKSELISTCIANKIQ 199

Query: 188 WCEDPSNTD 196
           W ED +N D
Sbjct: 200 WFEDSTNQD 208


>gi|225869500|ref|YP_002745447.1| PP-loop family protein [Streptococcus equi subsp. equi 4047]
 gi|254789048|sp|C0MAT4|TILS_STRE4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225698904|emb|CAW91895.1| PP-loop family protein [Streptococcus equi subsp. equi 4047]
          Length = 427

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 18  YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           + AH  +L+AVSGG DSM LL  LH+  +     +I+     V+H  R  + DE  Y+  
Sbjct: 16  FDAHQAVLIAVSGGVDSMNLLHFLHAFQAKL---QIRIGIAHVNHKQRPESDDEEAYLRS 72

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              +  I   V  ++ +  +     AAR  RY    E  +  + + ++TAH  DDQ ET+
Sbjct: 73  WAKKHAIPIYVAYFQGAFSEN----AARHLRYQFFEEIMQQEHYSALVTAHHADDQAETI 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R    +   L+G+ +   +  N  + RPFL   + ++       N    ED SN 
Sbjct: 129 LMRLIR--GSRLRHLAGIREVQPF-ANGQLIRPFLTVSKAEL------PNPFHFEDHSND 179

Query: 196 DDRFERVRVRR 206
              + R RVR 
Sbjct: 180 SMAYFRNRVRH 190


>gi|225350936|ref|ZP_03741959.1| hypothetical protein BIFPSEUDO_02511 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158392|gb|EEG71634.1| hypothetical protein BIFPSEUDO_02511 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 364

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 18/182 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L        +  S G ++   I +DH L++ +    +  +D C  L 
Sbjct: 45  IMVACSGGRDSMALAAVAAKTCA--SLG-LRCGTIIIDHQLQQGSAGVAQTTADRCVALG 101

Query: 82  IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV--- 135
           +       +   +S+   G+ AAAREARY  I +     +A+ ++ AHT +DQ ETV   
Sbjct: 102 LDPVRVRAIDVPDSRG-IGVEAAAREARYHAIVDACS--DASAVLLAHTKNDQAETVIIG 158

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +RS    A  GM  S + D + +       RP+L   RE+         ++W +DP+N 
Sbjct: 159 LLRSSGLDAVCGMNGSFIRDGVRF------LRPWLNMTREETTGICEDLRLAWWDDPTNG 212

Query: 196 DD 197
            D
Sbjct: 213 PD 214


>gi|212716399|ref|ZP_03324527.1| hypothetical protein BIFCAT_01322 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660652|gb|EEB21227.1| hypothetical protein BIFCAT_01322 [Bifidobacterium catenulatum DSM
           16992]
          Length = 364

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 18/182 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L        +  S G ++   I +DH L++ +    +  +D C  L 
Sbjct: 45  IMVACSGGRDSMALAAVAAKTCA--SLG-LRCGTIIIDHQLQQGSAGVAQTTADRCVALG 101

Query: 82  IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV--- 135
           +       +   +S+   G+ AAAREARY  I +     +A+ ++ AHT +DQ ETV   
Sbjct: 102 LDPVRVRAIDVPDSRG-IGVEAAAREARYHAIVDACS--DASAVLLAHTKNDQAETVIIG 158

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +RS    A  GM  S + D + +       RP+L   RE+         ++W +DP+N 
Sbjct: 159 LLRSSGLDAVCGMNGSFIRDGVRF------LRPWLNMTREETTGICEDLRLAWWDDPTNG 212

Query: 196 DD 197
            D
Sbjct: 213 PD 214


>gi|325283258|ref|YP_004255799.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP]
 gi|324315067|gb|ADY26182.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP]
          Length = 529

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 38/198 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ++V VSGG+DS+ LL AL +  ++             DH LR  + ++  +V  +  RL
Sbjct: 16  QVVVGVSGGADSVALLRALLAAGAEPLVAHF-------DHRLRPDSAEDAAWVEALAGRL 68

Query: 81  RIAH-----------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + +            V  W        L  AAR  RY+ ++  AK      ++TAHT  
Sbjct: 69  GVPYVGGGADVGRVAQVRGWN-------LEDAARRLRYSFLTRTAKDAGIDTVLTAHTRR 121

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNIS 187
           DQ ETV MR  R  A     LSG+          W  + RP L   RE++ ++L      
Sbjct: 122 DQAETVLMRLLRGEAV----LSGIAPR-------WGGVERPLLGVAREELEAYLRALGQD 170

Query: 188 WCEDPSNTDDRFERVRVR 205
           W ED +N D    R  +R
Sbjct: 171 WREDSTNADTALTRAWLR 188


>gi|190345978|gb|EDK37960.2| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 471

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 14/197 (7%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           F   ++  P  + +A+SGG DSM L  L++ +  + + S   ++  +I++DH  R  ++ 
Sbjct: 15  FGATTVKAPRRLAIALSGGVDSMCLAYLLSQYKQVYEPS---LELHSITIDHGYRSDSEI 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           E + V+ V     I  SV   K   N    +     AR  RYA      +  N   ++ A
Sbjct: 72  EAQKVAQVVQNWGILPSVSRLKYSCNPAKISNFEEVARTMRYAEFERFCRGNNIEGLLVA 131

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRS 179
           H  DDQ+ET   R +++ +  G+       T+    N      + + RP L+  + ++ S
Sbjct: 132 HNLDDQIETFIQRLRQNSSIFGLAGLKRATTLPVATNEPNERPIPLFRPLLQFPKSELIS 191

Query: 180 FLLQRNISWCEDPSNTD 196
             +   I W ED +N D
Sbjct: 192 TCIANKIQWFEDSTNQD 208


>gi|88809954|ref|ZP_01125459.1| hypothetical protein WH7805_09077 [Synechococcus sp. WH 7805]
 gi|88786144|gb|EAR17306.1| hypothetical protein WH7805_09077 [Synechococcus sp. WH 7805]
          Length = 339

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 22/197 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSDVC 77
           +L+A+SGG DSM LL  L  +   R            DH         +KD  ++ +   
Sbjct: 31  LLLALSGGQDSMALLGLLRDL---RKHHHWTLQLWHGDHGWHPGSACVSKDLAKWCAQEA 87

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------IMTAHTFDD 130
             LR++ S          T   AAAR  RY+ +S++A+ +N T        ++TAHT  D
Sbjct: 88  LPLRVSRSTAE------MTSGEAAARAWRYSELSQYAQQLNQTCASSNSCTVVTAHTASD 141

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISW 188
           + ET+ M+  R     G+G       +  + +    + RP L   RE+  +      +  
Sbjct: 142 RAETLLMQLSRGTDLAGLGSLRQSRPLQANASNGPRLVRPLLDFTREETAAICQDLQLPV 201

Query: 189 CEDPSNTDDRFERVRVR 205
             DPSN+D R ER R+R
Sbjct: 202 WHDPSNSDLRIERNRIR 218


>gi|324989589|gb|EGC21535.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK353]
          Length = 425

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L  V S +    I+ +   V+H 
Sbjct: 6   FLKKLQEKKYFQDH----RKVLVAVSGGLDSMTLLQLL--VDSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +  +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I + ED SN  + + R R+R
Sbjct: 168 --PDIQYFEDSSNFQNDYLRNRIR 189


>gi|329906074|ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547349|gb|EGF32180.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 467

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 13/194 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  LL   H          I+  A  V H L   A D +++ +  C+RL 
Sbjct: 35  LAIAYSGGLDSSALLYLAHRHAQKNG---IRLFAFHVHHGLSADADDWLQHCAGECARLG 91

Query: 82  IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +  +    + +    +G+ AAAR +RYA +    +     L++TAH  DDQ ETV ++  
Sbjct: 92  VTFAAQRVQLADTGVSGIEAAARSSRYAALGAMCRAHGVPLLLTAHHQDDQAETVLLQLL 151

Query: 141 RDYAEKGMGLSGMCDT------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           R       GLSGM DT      +L D  L ++RP L   R  + + + +  I+  +D SN
Sbjct: 152 RGSGVA--GLSGM-DTANCAPDLLGDAVLVMARPLLSFSRMQLATLVAKEGITHVDDASN 208

Query: 195 TDDRFERVRVRRFV 208
            D R+ R  +R  V
Sbjct: 209 LDTRYARNALRHEV 222


>gi|312601162|gb|ADQ90417.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyopneumoniae 168]
          Length = 276

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 7/150 (4%)

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           +++ LR  A  E   VS  C +  +   ++S+ + K +  L +  R  RY    +  K  
Sbjct: 17  INYNLRPEAIFETLLVSKFCQKYNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEF 76

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRRE 175
           N T ++  H  DD LETV+++ ++       G+    +      N+ I RPFL  R +++
Sbjct: 77  NCTKLLVGHHRDDFLETVFLQKKQKKIVTFWGIHKKNNL----FNMEILRPFLYWRTKKQ 132

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
            IR    Q+ I + +D SN   +++R ++R
Sbjct: 133 IIR-ICQQKKIPYLDDQSNFTGKYQRNQIR 161


>gi|288904236|ref|YP_003429457.1| hypothetical protein GALLO_0013 [Streptococcus gallolyticus UCN34]
 gi|325977213|ref|YP_004286929.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288730961|emb|CBI12505.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|325177141|emb|CBZ47185.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 421

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL   H +   R   +I+     ++H  R+ ++ E  Y+ +   + +
Sbjct: 21  VLIAVSGGVDSMNLL---HFLYIYRDKLEIEIGIAHINHKQRQESEMEEAYLCEWAEKHQ 77

Query: 82  IAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I   V  +      +G+ +  AAR+ RY    +     N T ++TAH  DDQ ET++MR 
Sbjct: 78  IPIYVDYF------SGIFSEKAARDFRYQFFKKIMVEKNYTAVVTAHHADDQAETIFMRF 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSGM     +     I RPFL   ++D+        I   ED SN    +
Sbjct: 132 LR--GSRLRHLSGMQAVSSFGTGELI-RPFLTIPKKDLPE------IFHFEDDSNQSLDY 182

Query: 200 ERVRVR 205
            R R+R
Sbjct: 183 LRNRIR 188


>gi|332879744|ref|ZP_08447434.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682263|gb|EGJ55170.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 434

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG DS+ L   L+S  ++       FS         E+  DE  +V     RL 
Sbjct: 14  VLVAISGGIDSVVLAHLLYSHGAEVILAHCNFSLRG-----EESDGDEA-FVRSFAERLG 67

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V  +       + Q     AARE RY      A+      I TAH  +D LET  +
Sbjct: 68  VQLLVERFDTHAYAKEHQLNTQLAARELRYEWFDRMAQAYACAYIATAHHANDNLETFLI 127

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G GL G+    +   N  + RP L   R+ I  +   + +SW ED SN  +
Sbjct: 128 NLSR-----GSGLDGLLG--IPQQNGKLIRPLLSFSRQQIYQYAQAKQLSWREDSSNASN 180

Query: 198 RFERVRVRR 206
           ++ R  +R 
Sbjct: 181 KYVRNVIRH 189


>gi|260902380|ref|ZP_05910775.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AQ4037]
 gi|308110178|gb|EFO47718.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AQ4037]
          Length = 438

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL  L     + S   +   A+ V H L E A            +  
Sbjct: 22  VVVAFSGGVDSRLLLELLRRYREENS---LSCHAVYVHHGLSENADIWADKCQVWAKQAG 78

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRS 139
           I+ SV     ++     + + AREARY  ++ H   IN   L++T    DDQ+ET  +  
Sbjct: 79  ISCSVERVNLDTNSGESIESLAREARYEALARH---INRGDLLLTGQHADDQVETFLLAL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M +T+ +     + RP L  +RE I +      + W ED SN D R+
Sbjct: 136 KRGSGPKG--LSSMAETMPFAGGTLV-RPLLNIKREQIEATAKNIGLEWVEDESNQDTRY 192

Query: 200 ERVRVRRFV 208
           +R  +R  +
Sbjct: 193 DRNFLRHRI 201


>gi|312865835|ref|ZP_07726057.1| tRNA(Ile)-lysidine synthetase [Streptococcus downei F0415]
 gi|311098710|gb|EFQ56932.1| tRNA(Ile)-lysidine synthetase [Streptococcus downei F0415]
          Length = 420

 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 16/185 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVS G DSM LL+ L +   D +   I+     V+H  R+ +  E  Y+ D      
Sbjct: 20  VLVAVSAGVDSMNLLLFLQAHQEDLA---IEIGLAHVNHKQRQQSDLEETYLRDWAEDHG 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +  +  +  +     +AR+ RY    +  +    T ++TAH  DDQ ET++MR  R
Sbjct: 77  LPFYLAHFTGNFSEK----SARDFRYNFFKKVMEKEGYTTLVTAHHADDQTETIFMRILR 132

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   L+G+     +     I RPFL  R+E++        +   ED SN  D + R
Sbjct: 133 --GSRLRHLAGIKAVQEFGPG-QIIRPFLNIRKEELPE------VFHFEDASNQSDAYLR 183

Query: 202 VRVRR 206
            R+R 
Sbjct: 184 NRIRH 188


>gi|203288215|ref|YP_002223230.1| cell cycle protein [Borrelia recurrentis A1]
 gi|201085435|gb|ACH95009.1| cell cycle protein [Borrelia recurrentis A1]
          Length = 439

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 21/203 (10%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-- 68
           F+ R+L+    ++VA SGG DS  LL+ L   L+          A    H +R  ++   
Sbjct: 14  FYKRNLLTKEKVIVAFSGGPDSTVLLLNLKKYLN------NNIVAFYFAHYIRSKSEQDL 67

Query: 69  EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAA--AREARYALISEHAKTINATLI 122
           E+ +V   C+   I   +    V  K    Q G+     AR+ RY  + E     +A+ +
Sbjct: 68  EIEHVKKFCNLYDIVCQIKKCDVDIKIKAKQLGISIEELARKYRYNALLEALNENHASYV 127

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AH  +DQ ET+ MR       +G  L G     +  +N +I RP L   RE+I  FL 
Sbjct: 128 ALAHNKNDQFETLIMR-----FFQGSFLDGFVGIPV--INNFIIRPLLEVSREEIEKFLS 180

Query: 183 QRNISWCEDPSNTDDRFERVRVR 205
             NI +  D +N +D + R +VR
Sbjct: 181 VNNIVYSIDSTNHEDLYLRNKVR 203


>gi|38234568|ref|NP_940335.1| hypothetical protein DIP2004 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200831|emb|CAE50535.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 280

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 26/201 (12%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  VR+ V P  I V +SGG+DS+ L+ AL               A+ VDH L +   
Sbjct: 2   ACRVAVRT-VQPRDITVGLSGGADSLALVAAL-------CAEDYNVHALCVDHGL-QPGS 52

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            EV   +   +R   AH+ +      P   L A AR ARY  +  H++ +    ++  HT
Sbjct: 53  HEVAQQAAHHARTFGAHAEIISVTVAPGN-LEANARTARYQAL--HSRNLP---VVVGHT 106

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ + + R  A      +GM    ++  NLW  RP L  RR    +   +  I 
Sbjct: 107 ADDQAETLLLGALRGKA------TGM---QIHTDNLW--RPLLGVRRATTLAACTELGIE 155

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
              DP N +  F RV +R  V
Sbjct: 156 PWHDPHNANTDFLRVALRTQV 176


>gi|303234983|ref|ZP_07321607.1| tRNA(Ile)-lysidine synthetase [Finegoldia magna BVS033A4]
 gi|302493838|gb|EFL53620.1| tRNA(Ile)-lysidine synthetase [Finegoldia magna BVS033A4]
          Length = 451

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 13  VRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDE 69
           +R  +   H  IL+ +SGG+DS+ LL  L  +  D  F   +     ++H  R+TA +DE
Sbjct: 12  IRENLIEKHDKILIGLSGGADSVFLLNILIQLQRDLDF---EIYTCHINHSYRDTALRDE 68

Query: 70  --VRYVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTA 125
              R +S+  + ++     V  K         L  + R  RY   +E  K+ +   I  A
Sbjct: 69  NFSRKISE-ENNIKFFSKKVDMKQYSIDNSISLEDSGRILRYKYFNEILKSEDLNKIAVA 127

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ+ET ++   R     G G+ G+C  I Y  N  I RP L   + +I ++L + +
Sbjct: 128 HHLDDQVETFFLHLFR-----GSGIDGLC-GIQYQ-NKNIIRPLLDVSKSEILNYLDEND 180

Query: 186 ISWCEDPSNTDDRFERVRVR 205
           I +  D +N     +R ++R
Sbjct: 181 IDYVTDETNFVADVQRNKIR 200


>gi|162448219|ref|YP_001621351.1| PP-loop superfamily ATPase [Acholeplasma laidlawii PG-8A]
 gi|161986326|gb|ABX81975.1| ATPase of the PP-loop superfamily [Acholeplasma laidlawii PG-8A]
          Length = 406

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 16/188 (8%)

Query: 23  LVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++AVSGG DSM L  L   H+         + F  +  +H  R  +  +   V  +C+  
Sbjct: 14  VLAVSGGVDSMVLFDLFVKHN---------LNFVVVHFNHQKRAESILDHELVESMCTLH 64

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I +  +  K           +R ARY  +   A+  +   I+TAH  DD  ET+ M+  
Sbjct: 65  HIPYHYIKLK--IKNGNFQEVSRNARYKNLEFIAEQYHTPYIVTAHHLDDLAETIMMKLI 122

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R      +G + M +    D  +++ +P L   +E+I  +     I + ED +N +D + 
Sbjct: 123 R--GSNLLGYAAMQEVTHIDKFIYL-KPLLNYSKEEISLYQQTHQIKFYEDHTNLEDTYS 179

Query: 201 RVRVRRFV 208
           R RVR  +
Sbjct: 180 RNRVRHHL 187


>gi|291548189|emb|CBL21297.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Ruminococcus sp.
           SR1/5]
          Length = 318

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 97/222 (43%), Gaps = 30/222 (13%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I  VR ++R    L     ++  VSGG+DS+ +L  L S+  +  F       + V H +
Sbjct: 2   ITRVRKYIRDNRMLKAEDMVVAGVSGGADSIAMLHILKSLQKEIGFS---MEVVHVHHGI 58

Query: 63  R--ETAKDEVRYVSDVCSR----LRIAHSVV-----SWKNSKPQTGLMA-----AAREAR 106
           R  E  +DE ++V  +C       R  H  V      WK  + +TG +         + R
Sbjct: 59  RGQEADRDE-QFVEKICRDWGIPFRSRHYPVPELSGKWKLGEEETGRIVRKQAFQEEKKR 117

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
                E +K      +  AH  +D  ET+       +  +G G+ G+    +  ++  I 
Sbjct: 118 LGFSGEQSKKNGQFRVALAHNRNDLAETML-----HHLARGTGIRGLSG--IQAVSGEII 170

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           RP L   R++I ++L +R IS+  D SN  D + R R+R  +
Sbjct: 171 RPVLCLERKEIVNYLKERGISYITDSSNLSDNYTRNRIRNHI 212


>gi|320540048|ref|ZP_08039704.1| putative tRNA(Ile)-lysidine synthetase [Serratia symbiotica str.
           Tucson]
 gi|320029897|gb|EFW11920.1| putative tRNA(Ile)-lysidine synthetase [Serratia symbiotica str.
           Tucson]
          Length = 442

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 115/282 (40%), Gaps = 31/282 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL  L  +   +   + +  A+ V H L   A     +    C+  R
Sbjct: 20  VLVAFSGGLDSTVLLHLLAQL--RQQHPEFQLRAVHVHHGLSAFADTWADHCGRQCAAWR 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-----IMTAHTFDDQLETVY 136
           +  +V      + Q    A   EA            NATL     ++TA   DDQ ET  
Sbjct: 78  VPLTV-----QRVQVDARAGGIEAAARTAR--YAAFNATLKADEILITAQHLDDQSETFL 130

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R     G+     C  +   + L   RP L C R  + ++  Q  +SW +D SN +
Sbjct: 131 LALKRGSGPAGLSAMAACGRLADHVLL---RPLLGCSRLRLEAYAQQHQLSWIDDDSNQN 187

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIA-- 251
            RF+    R F+R   L  L L+   F     +  +  A    L+ + L   +R+++A  
Sbjct: 188 PRFD----RNFLRLQVLPLLNLRWPHFTSAVARSASLCAEQEQLLDELLADQLRTLLAED 243

Query: 252 ---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
              + +++L       F LLR    I    ++LP    ++ +
Sbjct: 244 NSLVIEELLGCSPACRFALLR--RWIARHDVTLPSREQLQHL 283


>gi|307110239|gb|EFN58475.1| hypothetical protein CHLNCDRAFT_140495 [Chlorella variabilis]
          Length = 556

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%)

Query: 22  ILVAVSGGSDSMGL---------LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + VA+SGG DS+ L          +    +  DR   +    A+ VDH LR  + +E   
Sbjct: 22  VAVALSGGPDSLALASMTVWWQGFVRNQVLRRDRLRSQQTPLALIVDHKLRPESTEEAHA 81

Query: 73  VSDVCSRLRIAHSVVS--WKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           V+     L +   V++  W   +  Q   M AAREARYA +      +  T ++ AH  D
Sbjct: 82  VAAQAEGLGMQTRVLALGWPPGEVAQGDRMVAAREARYAALLRACGEMGRTHLLLAHHAD 141

Query: 130 DQLETVYMRSQRDYAEKGMGLSGM---CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           DQ ET  +R    +A   +GL+ M    +       + + RP L   + ++ ++  +  +
Sbjct: 142 DQAETFLLRLL--HASGVVGLACMPAVAEKRTEFGRIKVVRPLLGFHKAELEAYCQRSRL 199

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI 211
            +  DP+N++  + R R+R  +R +
Sbjct: 200 PYIVDPTNSELSYHRNRIRHVLRQM 224


>gi|156975489|ref|YP_001446396.1| hypothetical protein VIBHAR_03220 [Vibrio harveyi ATCC BAA-1116]
 gi|171769914|sp|A7MXZ8|TILS_VIBHB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|156527083|gb|ABU72169.1| hypothetical protein VIBHAR_03220 [Vibrio harveyi ATCC BAA-1116]
          Length = 448

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%)

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
           AREARY  +++H ++    L++T    DDQ+ET  +  +R    KG  LS M +++ +  
Sbjct: 110 AREARYQALAKHIQS--GDLLLTGQHADDQVETFLLALKRGSGPKG--LSSMAESMPFAG 165

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              + RP L  +RE I +   ++ + W ED SN D R++R
Sbjct: 166 GTLV-RPLLAIKREQIEAVAKEQGLDWVEDESNQDTRYDR 204


>gi|225620287|ref|YP_002721544.1| putative Cell cycle protein MesJ [Brachyspira hyodysenteriae WA1]
 gi|225215106|gb|ACN83840.1| putative Cell cycle protein MesJ [Brachyspira hyodysenteriae WA1]
          Length = 450

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRLR 81
           VA SGG DS  LL   + +  + SF  I    I V++ LR  ++  DE+ +  D+  +  
Sbjct: 23  VAYSGGIDSQVLLNIAYRLKDELSFDLI---IIHVNYNLRGEDSTNDEL-FARDMAKKYN 78

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISE-HAKTINATLIMTAHTFDDQLETVYMRS 139
           I   V   K NS     +   AR  RY    E H K I   L++ AH  DD  ET+  R 
Sbjct: 79  IEIYVKEIKPNSYNGKNIQLEARNDRYNFFEELHNKKIYDYLLI-AHNKDDLAETIIYRM 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                 KG G +      L D   +I RP L   R+DI  +    N+   ED SN  + +
Sbjct: 138 I-----KGAGTNVYKS--LRDKKGYILRPILNFYRKDIEKYAKNNNLEHREDVSNKKNYY 190

Query: 200 ERVRVRRFV 208
            R ++R  +
Sbjct: 191 SRNKIRNLI 199


>gi|21325470|dbj|BAC00092.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Corynebacterium glutamicum ATCC 13032]
          Length = 297

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 93/199 (46%), Gaps = 23/199 (11%)

Query: 13  VRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           +R  V P    H+ + +SGG DS+ L+ A   VL+++S    + +AI +DH L +T   E
Sbjct: 3   LRKAVRPYLKEHVHIGLSGGPDSLALVAA---VLAEKS----QVTAICIDHNL-QTGSAE 54

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           V + +   +R   A ++V      P  G+ AAAREARYA  ++    I       AHT D
Sbjct: 55  VTHNAAAMARHMGAQAIVKSIEVAPGEGMEAAAREARYAAFAQLTDEI-----WVAHTMD 109

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET  +   R         +GM D       L I RP L  RR       ++  +   
Sbjct: 110 DQAETYLLGGLRGNP------AGMKDASRRP-ELSIIRPLLGARRAHTHGACVELGLKPW 162

Query: 190 EDPSNTDDRFERVRVRRFV 208
            DP N DD F RV +R  V
Sbjct: 163 HDPQNFDDAFRRVAIRNQV 181


>gi|329298696|ref|ZP_08256032.1| tRNA(Ile)-lysidine synthetase [Plautia stali symbiont]
          Length = 432

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 7/189 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A SGG DS  LL  L  V   R   +++   + V H     A     +    C +
Sbjct: 14  ARCVLAFSGGLDSSVLLYQL--VSWQRQQPQLRVRTLHVHHGFSPNADRWAAHCQQQCQQ 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   V+  +      G+ AAAR ARY  +  H +      ++TA   DDQ ET+ +  
Sbjct: 72  WHIPCEVLRVQVDARAGGIEAAARTARYQALFTHLQP--GEYLLTAQHLDDQAETLLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G  L+ M      + + W  RP L   R+ + ++ +   + W +D SN D R+
Sbjct: 130 KRGSGPAG--LAAMPQQRQVNGH-WHLRPLLNLSRQQLEAYAVGHQLDWIDDESNADRRY 186

Query: 200 ERVRVRRFV 208
           +R  +R+ V
Sbjct: 187 DRNFLRQDV 195


>gi|332365105|gb|EGJ42870.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK355]
          Length = 425

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 92/206 (44%), Gaps = 24/206 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           FL  ++  ++F        H  +LVAVSGG DSM LL  L  + S +    I+ +   V+
Sbjct: 6   FLKKMQEKKYF------QGHRKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVN 56

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H  R  +  E + +  +  +L +     S+     +T    AAR+ RY    +  +  + 
Sbjct: 57  HKQRPESDQEEKALVKIAEQLGVKIFTSSFSGKFSET----AARQFRYDFFGKVMQEEHY 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L   + D   
Sbjct: 113 TALVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDFPE 169

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
                 I   ED SN  + + R R+R
Sbjct: 170 ------IQHFEDSSNFQNDYLRNRIR 189


>gi|317060743|ref|ZP_07925228.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. D12]
 gi|313686419|gb|EFS23254.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. D12]
          Length = 446

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 88/192 (45%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ILVA SGG DS+ L+  L  +    SF  +    + + H +R E A+++  +  D   + 
Sbjct: 24  ILVAFSGGPDSVFLVEMLLKLQEQLSFQML---LLHLHHMIRQEAAEEDYLFCLDYAKKK 80

Query: 81  RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +        V S+   + Q+ L  A R  RY    +  K      I TAH  DD LET 
Sbjct: 81  NLEIIARKMDVPSYAKKEGQS-LEEAGRILRYQFFYQIQKQRAYHKIATAHHLDDHLETF 139

Query: 136 YMRSQRDYAEKGM-GLS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           + R  R  + +G+ G+S    D I         RP     + +I S+L +  I++C+D +
Sbjct: 140 FFRLLRGSSMEGLAGISRKQADKI---------RPLRDFEKAEILSYLERHQIAYCKDKT 190

Query: 194 NTDDRFERVRVR 205
           N +  + R R+R
Sbjct: 191 NEETEYSRNRIR 202


>gi|153835638|ref|ZP_01988305.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio harveyi
           HY01]
 gi|148867745|gb|EDL67002.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio harveyi
           HY01]
          Length = 448

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 23/197 (11%)

Query: 22  ILVAVSGGSDSMGLLI---------ALHSVLSD-RSFGKIKFSAISVDHCLRETAKDEVR 71
           I++A SGG DS  LL          ++ + L+D  SF   K  A+ V H L   A +   
Sbjct: 22  IVLAFSGGVDSRLLLELLSRYQQAYSIDNQLTDSHSF---KCHAVYVHHGLSSNADEWAD 78

Query: 72  YVSDVCSRLRIAHSV--VSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                  +  I +SV  VS   NS     L+A  REARY  +++H ++    L++T    
Sbjct: 79  KCLVWAEQAGITYSVERVSLDTNSGESIELLA--REARYQALAKHIQS--GDLLLTGQHA 134

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ+ET  +  +R    KG  LS M +++ +   + + RP L  +RE I +   ++ + W
Sbjct: 135 DDQVETFLLALKRGSGPKG--LSSMAESMPFAGGILV-RPLLAIKREQIEAVAREQKLDW 191

Query: 189 CEDPSNTDDRFERVRVR 205
            ED SN D R++R  +R
Sbjct: 192 VEDESNQDIRYDRNFLR 208


>gi|256384073|gb|ACU78643.1| tRNA(Ile)-lysidine synthase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384905|gb|ACU79474.1| tRNA(Ile)-lysidine synthase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455764|gb|ADH21999.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 401

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 17/188 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DS+ LL  +  ++   +          V++  R  + ++   V+++C +  +
Sbjct: 13  LIAVSGGPDSVFLLCNVVKLVDPNNL-----VVCHVNYNFRSDSNNDQMIVTNLCKQFNL 67

Query: 83  AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              +++     S  +    + AR  RY   +  A       ++ AH F+D +ET  ++ Q
Sbjct: 68  KLEILNINKDYSLLKQNFESWARVQRYDFFNMIASKYQIYNLLVAHNFNDLIETYLLQLQ 127

Query: 141 RDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+      GL   S   D ++Y       RP L  ++  I ++L    IS+  D +N+D 
Sbjct: 128 RNNLVDYYGLKPVSHYKDLVVY-------RPLLDIKKSQILNYLNTNKISYAIDSTNSDT 180

Query: 198 RFERVRVR 205
           +++R ++R
Sbjct: 181 KYQRNKIR 188


>gi|56808856|ref|ZP_00366567.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Streptococcus pyogenes M49 591]
          Length = 428

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L+AVSGG DSM LL  L+ +  D+    I+     V+H  R  +  E  Y+     + 
Sbjct: 22  HVLIAVSGGVDSMNLLHFLY-LFQDKL--TIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78

Query: 81  RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +++      G+ +  AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 79  DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 184 FLRNRVR 190


>gi|300114833|ref|YP_003761408.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus watsonii C-113]
 gi|299540770|gb|ADJ29087.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus watsonii C-113]
          Length = 442

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 10/184 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL +L   L  +  G +  SAI ++H L   + +   +  + C+ L + 
Sbjct: 23  VAYSGGLDSQVLLYSLVQ-LGPKLPGSL-ISAIHINHGLHPRSGEWSLHCRESCAALGVG 80

Query: 84  HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  V   N  P+ G    AAAREARY  +   ++      ++TA   DDQ+ET+ ++  R
Sbjct: 81  YEEVK-VNGHPRKGESPEAAAREARYGAL--RSRIARGECLLTAQHQDDQVETLLLQLLR 137

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+              L   RP L   R +++ +  Q  + W EDPSN D  F+R
Sbjct: 138 GGGPAGLAAMAKAAPFGQGRLL---RPLLSFSRSELKIYAEQEGLVWVEDPSNFDLEFDR 194

Query: 202 VRVR 205
             +R
Sbjct: 195 NYLR 198


>gi|152991221|ref|YP_001356943.1| tRNA-lysidine synthase [Nitratiruptor sp. SB155-2]
 gi|151423082|dbj|BAF70586.1| tRNA-lysidine synthase [Nitratiruptor sp. SB155-2]
          Length = 329

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 22/188 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S G DS  L      +L +R+   I F    VD+ LR  +KDEV Y  ++  +   
Sbjct: 15  LLAFSAGIDSTALFF----LLLERN---IDFDIAIVDYGLRSQSKDEVAYAVELAKKYTK 67

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                      P   +   AR  RY    E  +      ++TAH  +DQLE   M+    
Sbjct: 68  KIYTKQVTIKPP--SVEEKARNVRYQFFDEIIQQEGYHNLLTAHQLNDQLEWFLMQL--- 122

Query: 143 YAEKGMGLSGMCDTILYDL-----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               G G +G+C+ +  D+        I RP L  ++ +++S+L  + I +  D SN  D
Sbjct: 123 ----GKG-AGLCELVGMDIVTNRKGYKIVRPLLFVQKSELKSYLETKKIPYYIDESNLQD 177

Query: 198 RFERVRVR 205
            + R  +R
Sbjct: 178 SYFRNYIR 185


>gi|306832496|ref|ZP_07465648.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425396|gb|EFM28516.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 421

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL   H +   R   +I+     ++H  R+ ++ E  Y+ +   + +
Sbjct: 21  VLIAVSGGVDSMNLL---HFLYIYRDKLEIEIGIAHINHKQRQESEMEEAYLCEWAEKHQ 77

Query: 82  IAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I   V  +      +G+ +  AAR+ RY    +     N T ++TAH  DDQ ET++MR 
Sbjct: 78  IPIYVDYF------SGIFSEKAARDFRYQFFKKIMVEKNYTAVVTAHHADDQAETIFMRF 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSGM     +     I RPFL   ++D+        I   ED SN    +
Sbjct: 132 LR--GSRLRHLSGMQAVSSFGTGELI-RPFLTIPKKDLPE------IFHFEDDSNQSLDY 182

Query: 200 ERVRVR 205
            R R+R
Sbjct: 183 LRNRIR 188


>gi|87301619|ref|ZP_01084459.1| possible MesJ-like protein [Synechococcus sp. WH 5701]
 gi|87283836|gb|EAQ75790.1| possible MesJ-like protein [Synechococcus sp. WH 5701]
          Length = 365

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 31/221 (14%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+SGG DSM L   L   L  R     +      +H  R+ A D+   ++     L +  
Sbjct: 34  AISGGQDSMALTALL---LELRRLHGWELHLWHGNHGWRKEAADQAGELAAWAGGLGLPI 90

Query: 85  SVVSWKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            V +   +   +  G   A R  RY  +++ A ++  T ++T HT  D+ ET+     R 
Sbjct: 91  RVENAPAAPASSASGREEAGRRWRYERLNQQALSLGCTRVVTGHTGSDRAETLLFNLARG 150

Query: 143 YAEKGMG-------LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
              +G+        LSG  + +         RP L   R +  SF  Q+ +    DP NT
Sbjct: 151 CGLRGLSSLRARRPLSGRIELV---------RPLLGFSRAETASFCKQQQLPLWLDPGNT 201

Query: 196 DDRFERVRVRRFVRDI--DLH--------ALYLKMKKFQDL 226
           D RF R R+R+ V  +  +LH        AL  +++  Q+L
Sbjct: 202 DPRFSRNRLRQEVLPVLEELHPGAWRRLGALAERLEGTQNL 242


>gi|86146872|ref|ZP_01065191.1| Cell cycle protein MesJ [Vibrio sp. MED222]
 gi|85835324|gb|EAQ53463.1| Cell cycle protein MesJ [Vibrio sp. MED222]
          Length = 448

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 92/200 (46%), Gaps = 13/200 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F +S + P  ++VA SGG DS  LL +A     S      I+  A+ V H L + A    
Sbjct: 12  FQQSDLKPRRLVVAFSGGVDSRVLLELAAKYAKSHH----IECCAVHVHHGLSKNADLWA 67

Query: 71  RYVSDVC--SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                 C  S + +A   VS   +  ++ +   AR+ARY  + +H       +++T    
Sbjct: 68  EQCQTWCDASSVPLAIERVSLDINSGES-VEKLARDARYDSLQKHLSF--GDVLITGQHI 124

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET  +  +R    KG  LS M   + +    +I RP L   R DI +      ++W
Sbjct: 125 DDQLETFLLALKRGSGPKG--LSSMAKVMSFG-EAFIVRPLLSVTRLDIEASAHDMGLTW 181

Query: 189 CEDPSNTDDRFERVRVRRFV 208
            ED SN D RF+R  +R  V
Sbjct: 182 VEDESNQDLRFDRNFIRHQV 201


>gi|301162414|emb|CBW21959.1| putative ATP-binding PP-loop protein [Bacteroides fragilis 638R]
          Length = 435

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +LV +SGG+DS+ LL  L S+          F         +E+ +DE  +V  +C    
Sbjct: 22  VLVTLSGGTDSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I H   +   +K    +  AARE RY       +   A++I TAH  DD +ETV +
Sbjct: 76  VLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREASVIATAHHKDDSVETVLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+      + N  I RP L   RE+I ++L   +  +  D +N  D
Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|169824693|ref|YP_001692304.1| cell cycle protein [Finegoldia magna ATCC 29328]
 gi|167831498|dbj|BAG08414.1| cell cycle protein [Finegoldia magna ATCC 29328]
          Length = 451

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 18/200 (9%)

Query: 13  VRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDE 69
           +R  +   H  IL+ +SGG+DS+ LL  L  +  D  F   +     ++H  R+TA +DE
Sbjct: 12  IRENLIEKHDKILIGLSGGADSVFLLNILIKLQRDLDF---EIYTCHINHSYRDTALRDE 68

Query: 70  --VRYVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTA 125
              R +S+  + ++     V  K         L  + R  RY   +E  K+ +   I  A
Sbjct: 69  NFSRKISE-ENNIKFFSKKVDMKQYSIDNSISLEDSGRILRYKYFNEILKSEDFNKIAVA 127

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ+ET ++   R     G G+ G+C  I Y  N  I RP L   + +I ++L + +
Sbjct: 128 HHLDDQVETFFLHLFR-----GSGIDGLC-GIQYQ-NKNIIRPLLDVSKSEILNYLDEND 180

Query: 186 ISWCEDPSNTDDRFERVRVR 205
           I +  D +N     +R ++R
Sbjct: 181 IDYVTDETNFVADVQRNKIR 200


>gi|325479551|gb|EGC82647.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 454

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 25/193 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKI--------KFSAISVDHCLRETA-KDEVRY 72
           I+V  SGG DS  L+ AL+ + ++  F  I        +  AI  +  ++ETA K  +R+
Sbjct: 23  IIVGASGGPDSQFLVYALNELKNELKFDIILAHFNHLHRKEAIEDEMLVKETAEKLSLRF 82

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           ++   S  + A  +        +     A R  RY       K  N   I  AHT DDQ 
Sbjct: 83  ITKSQSMDQFAKDM--------KISPEDAGRRLRYEFFRSIEKDKNPK-IAVAHTMDDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV MR  R     G G++G+   + Y  N  I RP L  +++D+  +L    I++  D 
Sbjct: 134 ETVLMRIIR-----GTGVNGLV-AMTYK-NDDIIRPILDIKKQDLLDYLATNGINYHIDK 186

Query: 193 SNTDDRFERVRVR 205
           +N +  + R ++R
Sbjct: 187 TNNETDYTRNKIR 199


>gi|209558597|ref|YP_002285069.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes NZ131]
 gi|209539798|gb|ACI60374.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes NZ131]
          Length = 428

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L+AVSGG DSM LL  L+ +  D+    I+     V+H  R  +  E  Y+     + 
Sbjct: 22  HVLIAVSGGVDSMNLLHFLY-LFQDKL--TIRIGIAHVNHKQRSESDSEEAYLKCWAKKH 78

Query: 81  RIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +++      G+ +  AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 79  DIPIYVSNFE------GIFSEKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIR--GSRLRHLSGIKSVQPF-ANGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVR 205
           F R RVR
Sbjct: 184 FLRNRVR 190


>gi|146329382|ref|YP_001209278.1| tRNA(Ile)-lysidine synthetase [Dichelobacter nodosus VCS1703A]
 gi|146232852|gb|ABQ13830.1| tRNA(Ile)-lysidine synthetase [Dichelobacter nodosus VCS1703A]
          Length = 415

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 24/231 (10%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F  ++   P   L+A SGG DS+ LL   H++   ++        + ++H   + A    
Sbjct: 10  FQWQTQTNPTAYLLACSGGRDSIALL---HALYQQKTQLSAPLEIVYINHGWHQDAAKWG 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             V+   +    +   VS  + K      A AR+ARY   ++    +N  L +TAH  DD
Sbjct: 67  ELVATRAAAYGFSFRSVS-LHLKATKNAEAVARKARYQAFAQ-LLPVNGVL-LTAHHQDD 123

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTIL----YDLNLWISRPFLRCRREDIRSFLLQRNI 186
           Q ET+ +   R     G GL G+    L         W  RP+L   R +I  +L  + +
Sbjct: 124 QAETLLLNLCR-----GSGLDGLSAMPLRRSFAAGEHW--RPWLLHARAEIEDYLKSQQL 176

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           ++ +D SNTD R++R  +R  V       L L   +F  +R ++    A L
Sbjct: 177 TFVDDSSNTDTRYQRNWLRHQV-------LPLLETRFPAIRAQLAQTSAQL 220


>gi|319940218|ref|ZP_08014571.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV]
 gi|319810689|gb|EFW07019.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV]
          Length = 425

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DSM LL  L+     R   +I+     V+H +RE +  E   +  +  +L 
Sbjct: 22  VLLAISGGLDSMTLLDWLYKY---RKKLEIEIYLAHVNHGVREESDFEEEKLKKIAKKLG 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  S+ +   S P +     AR+ RYA   +     N T ++TAH  DDQ ET++MR  R
Sbjct: 79  V--SIFTSSFSGPFSE--QKARDFRYAFFKKIMLEENCTALVTAHHADDQAETIFMRILR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   +SGM +   +  N  + RP L  ++ +         I   ED +N ++ + R
Sbjct: 135 --GSRLFHISGMKEKQKF-ANGELIRPLLSFQKSNFPP------IFHFEDWTNQENHYLR 185

Query: 202 VRVR 205
            R+R
Sbjct: 186 NRIR 189


>gi|226939785|ref|YP_002794858.1| MesJ [Laribacter hongkongensis HLHK9]
 gi|226714711|gb|ACO73849.1| MesJ [Laribacter hongkongensis HLHK9]
          Length = 447

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 15/188 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS+ LL AL    +      I   A+ V H L   A D   + SD+C  L + 
Sbjct: 38  VGLSGGVDSVVLLQALSRCATGHG---IALRAVHVHHGLSPHADDWAGFCSDLCRELSVP 94

Query: 84  HSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             +  VS   S  Q+    A R    A  +  ++     ++  AH  DD  ETV + + R
Sbjct: 95  LRIERVSVVRSGGQSLEAEARRARYAAYRNGGSR-----IVALAHHADDLAETVLLAALR 149

Query: 142 DYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                G  L+ M    ++D L +W  RP L  RR ++ S   Q+  SW  D SN D R+ 
Sbjct: 150 GGGAHG--LAAMPAWRVHDGLTVW--RPLLGWRRNELESMARQQGWSWITDESNADPRYR 205

Query: 201 RVRVRRFV 208
           R  +R  V
Sbjct: 206 RNALRHAV 213


>gi|32474937|ref|NP_867931.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1]
 gi|61216595|sp|Q7UNE1|TILS_RHOBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|32445477|emb|CAD75478.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1]
          Length = 397

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 23/205 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFG--------KIKFSAISVDHC---LR--ETAKDE 69
           LV  SGG+DS+ L+  L  + ++ S G            + + V HC   LR  E+  DE
Sbjct: 40  LVGCSGGADSVALICLLAELWAEESNGLNPANETVTKPVAPLVVAHCNHGLRGEESNADE 99

Query: 70  VRYVSDVCSRLR---IAHSVVSWKNSKPQTGLMAAAR---EARYALISEHAKTINATLIM 123
             +V  +C +L+   + H V    NS   +G ++  R   + R       AK      + 
Sbjct: 100 A-FVRQICDQLQLPLVIHHVPPLNNSA-TSGPVSDERTLRQIRRDFFERAAKQHGCRYVA 157

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH+ DDQ ET+     R      +GL+G+ +    D ++ + RP L+ RR+ +R  L +
Sbjct: 158 VAHSADDQAETMLHHFIRGTGP--LGLAGIAEASELDTDIVVRRPLLQVRRDTLRDGLRE 215

Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208
               W ED SN    + R  +R  V
Sbjct: 216 IGQPWREDASNRHTIYTRNWIRHDV 240


>gi|118587144|ref|ZP_01544573.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163]
 gi|118432423|gb|EAV39160.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163]
          Length = 299

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 5/189 (2%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DS  L   L    S+    +       VDH LR  + +E + + D  +   
Sbjct: 24  LLLAISGGVDSTVLADLLFKYESN---PRSHLFLAHVDHQLRADSANETKLIDDQFANRG 80

Query: 82  IAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +      W   K P +G+  AAR+ RY      A  + A  I+ A   DDQ ET  ++  
Sbjct: 81  LCVFHEKWPLEKHPHSGIEDAARKFRYDFYKRMALKVGARKIILAQHADDQAETTLLKII 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRF 199
           R    + +        +  D  + + RP L   + +I  +  + ++ W ED +N D D  
Sbjct: 141 RGADWQTVSAMEWSRPLEKDSPIEVVRPLLNVEKSEIYDYAEKNHLKWIEDSTNKDPDYT 200

Query: 200 ERVRVRRFV 208
            R ++R  V
Sbjct: 201 SRNQIRNVV 209


>gi|188990960|ref|YP_001902970.1| Putative cell cycle protein mesJ homolog. [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732720|emb|CAP50914.1| Putative cell cycle protein mesJ homolog [Xanthomonas campestris
           pv. campestris]
          Length = 432

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 9/191 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA +LVA SGG DS    + LH++ +   + +    A+ V H L   A     +    C+
Sbjct: 12  PAPVLVAYSGGMDSA---VLLHALAATDGYREAGLRAVHVHHGLHADADAWALHCQQQCA 68

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L IA  VV  + ++  +G    A        +  A       +  AH  DDQ ET  +R
Sbjct: 69  ALGIALQVVRVQVAR-DSGSGLEAAARAARHAAFAATLAAGEWLALAHHRDDQAETFLLR 127

Query: 139 SQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           + R  A    GL+ M     +    LW  RP L   R D+ ++     + W +DPSNTD 
Sbjct: 128 ALR--ASGPDGLAAMRPQRPFGPGTLW--RPLLGHARADLAAYAQAHAVRWIDDPSNTDP 183

Query: 198 RFERVRVRRFV 208
           + +R  +R  V
Sbjct: 184 QHDRNFLRTQV 194


>gi|289548617|ref|YP_003473605.1| tRNA(Ile)-lysidine synthetase [Thermocrinis albus DSM 14484]
 gi|289182234|gb|ADC89478.1| tRNA(Ile)-lysidine synthetase [Thermocrinis albus DSM 14484]
          Length = 298

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 21/216 (9%)

Query: 3   LSPIESVRFFVRSL-VYP--AHILVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISV 58
           +S +  V F  R L + P  + +LVA SGG+DS+     + ++L  + F G  +   + V
Sbjct: 1   MSLLRKVVFLQRKLQLIPPGSSLLVAFSGGADSV---ALVLALLELKGFIGWKRILLMHV 57

Query: 59  DHCLR--ETAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
           +H +R  E  +DE+ +  +   R    L +    +     K +  L + ARE RY L+ E
Sbjct: 58  NHMIRGGEAERDEL-FCREFAQRHQLPLLVERIDIPSIAEKKKENLESIAREERYRLLRE 116

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                   LI+TAH  +D +ETV +     +  +G G  G+      + +  + RP    
Sbjct: 117 VKDREGLDLIVTAHHLNDLVETVLL-----WLVRGCGTEGLMGFDEREGD--VVRPLFLV 169

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           ++E+I +F+  +  SW ED +N D  + R R+R  V
Sbjct: 170 KKEEIVAFVKGKGESWVEDSTNMDVGYARNRIRHRV 205


>gi|317496225|ref|ZP_07954585.1| tRNA(Ile)-lysidine synthetase [Gemella moribillum M424]
 gi|316913800|gb|EFV35286.1| tRNA(Ile)-lysidine synthetase [Gemella moribillum M424]
          Length = 446

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 10/186 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS   ++  H +++       +     ++H LR+ + +E  +V    S   I 
Sbjct: 23  LALSGGVDS---IVLFHLLVTKYRHTYKELVVFHINHGLRKESYEEAEFVEKFVSNYDIR 79

Query: 84  HSVVSWK-NSKPQTGLMAA---AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
                 + NS  +   ++    AR+ RY   +E A   N T I+TAH  +DQ+E + MR 
Sbjct: 80  FYKKELEMNSLARDKHISEEMLARKLRYKAFNEMAAKENITKILTAHHKNDQVENILMRL 139

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                 + M  +   D      NL I RP L   +E +  +  + N+ +  D SN D  +
Sbjct: 140 ---LTGRSMDYNLAIDNKGRHGNLTIYRPLLNVLKETLEQYAQENNLKYYTDESNFDTDY 196

Query: 200 ERVRVR 205
            R  +R
Sbjct: 197 TRNNIR 202


>gi|262374859|ref|ZP_06068093.1| tRNA(Ile)-lysidine synthetase [Acinetobacter lwoffii SH145]
 gi|262309872|gb|EEY91001.1| tRNA(Ile)-lysidine synthetase [Acinetobacter lwoffii SH145]
          Length = 458

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 97/215 (45%), Gaps = 21/215 (9%)

Query: 12  FVRSLV-YPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           F++ L  +PA    L+  SGG DSM LL  +  + S+      K  AI VDH L+  +  
Sbjct: 20  FLKQLQDFPAETKFLIGCSGGVDSMLLLHLMFFLCSE------KIRAIYVDHQLQSISSA 73

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
              +V   C +L I   ++   N      L   AR +RY    +H +     +++ AH  
Sbjct: 74  WGTFVQQQCRQLNIP-CIIQPVNVAS-GNLEQQARNSRYQAYLQHLQA--DEILVLAHHQ 129

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNI 186
            DQ ET+ +R        G G+ G+      D+  NL I RP L   RE I  +    N+
Sbjct: 130 QDQAETLMLR-----LLSGAGIDGLAAMKQIDIRENLTIWRPLLNISREQICQWASDLNV 184

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
              EDP+N D  ++R   R+ +  + L   Y KM+
Sbjct: 185 QNIEDPTNADTYYDRAWARQTLWPV-LSERYPKMQ 218


>gi|253563316|ref|ZP_04840773.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5]
 gi|251947092|gb|EES87374.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5]
          Length = 435

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +LV +SGG+DS+ LL  L S+          F         +E+ +DE  +V  +C    
Sbjct: 22  VLVTLSGGADSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I H   +   +K    +  AARE RY       +   A++I TAH  DD +ETV +
Sbjct: 76  VLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREASVIATAHHKDDSVETVLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+      + N  I RP L   RE+I ++L   +  +  D +N  D
Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|228473589|ref|ZP_04058341.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274961|gb|EEK13771.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624]
          Length = 414

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 22/211 (10%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRI 82
           +A+SGG DS+ L   LH +        I F     +  LR E ++ +  +V  +   L +
Sbjct: 1   MAISGGVDSVVLAHLLHEL-------GISFLMAHCNFQLRGEESEGDQHFVETLAKELSV 53

Query: 83  AHSVVSW--KNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             ++  +  K      GL    AAR  RY       +      I+TAH  +D  ET  + 
Sbjct: 54  PIAIKRFETKTYGKAHGLNTQLAARVLRYEWFEALRQEQGYDYILTAHQANDSWETFLIN 113

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           + R     G GL G+    +   N  + RP L   RE+I +F  +R I W ED SN  D 
Sbjct: 114 TSR-----GSGLKGLLG--IPAENAHVLRPLLPFSREEILAFAQERGICWREDSSNGSDA 166

Query: 199 FERVRVRRFVRDI--DLHALYLK-MKKFQDL 226
           + R ++R  +  I  ++H  + K  +K Q+L
Sbjct: 167 YTRNKIRHHLSPILKEIHPNFFKNFEKTQNL 197


>gi|269121223|ref|YP_003309400.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386]
 gi|268615101|gb|ACZ09469.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386]
          Length = 442

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 14/191 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS+ L    H +   R    ++   + V+H LRE A +++++V +   +  
Sbjct: 26  VLIAFSGGPDSVFLF---HCINFFRESLGLELELVYVNHKLREDADEDIKFVKEFAEKYE 82

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + + +    V     + +     A RE RY +  +  K  N   I T H  DD +ET   
Sbjct: 83  VRYHIREADVKETAVREKISEEEAGREERYRIFFDIMKENNIDKIATGHNLDDNIETFIF 142

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G  L+G+    +      I RP L  R++ I   L   +  +  D +N + 
Sbjct: 143 RLLR-----GTALNGLKGIPVK--RGAIIRPILEFRKDYILEVLDGADEEYRLDSTNFET 195

Query: 198 RFERVRVRRFV 208
           ++ R ++R  +
Sbjct: 196 KYTRNKIRNLI 206


>gi|326434347|gb|EGD79917.1| hypothetical protein PTSG_10199 [Salpingoeca sp. ATCC 50818]
          Length = 666

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 14/179 (7%)

Query: 43  LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMA 100
           L   + G  +  A+ VDH LR  + +E   V+       +A  V  ++W+ +   T  MA
Sbjct: 6   LVKHALGADRLRAVIVDHRLRHESTEEAHQVAAYLQGQGVAAHVEHLAWRVNDKHTQEMA 65

Query: 101 AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
             R  RY  +   A T     IMT H  DD  ET+ +R  R  +  G+        + Y 
Sbjct: 66  --RHKRYHALGHAATTHGCRHIMTGHHADDVAETLVLRCLRQSSVHGLAAMREVQPLYYA 123

Query: 161 LN---LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
                L ++RP L   + ++  +     I W EDP+N D         ++ R+   HAL
Sbjct: 124 HAFEPLLLTRPLLAVGKRELELYCRDNGIWWVEDPTNRD-------ATKYTRNSIRHAL 175


>gi|332298400|ref|YP_004440322.1| tRNA(Ile)-lysidine synthase [Treponema brennaborense DSM 12168]
 gi|332181503|gb|AEE17191.1| tRNA(Ile)-lysidine synthase [Treponema brennaborense DSM 12168]
          Length = 489

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 34/213 (15%)

Query: 16  LVYPAHILV-AVSGGSDSMGLLIA-------LHSVL---SDRSFGKIKFSAISVDHCLR- 63
           L  P  I+   VSGG+DSM LL A       L+S      +      +F  I+VDH +R 
Sbjct: 31  LFRPGSIVAFGVSGGADSMALLCASVRIRESLYSASCTPGENDTASARFRVITVDHNIRP 90

Query: 64  -ETAKDEVRYVSDVCSRL-----RIA---HSVVSWKNSKPQTGLMAAAREARYALISEHA 114
            E +  +  +V + C  L     R+A      V     + + GL  AAR  RY +    A
Sbjct: 91  PEESGGDAAFVRNFCETLPSTDCRVAVFERGAVERLARERRRGLEEAARSLRYGIFESDA 150

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRC 172
           +   A +I  AH  +DQLET+ +R    + +     SG+  C            RP L  
Sbjct: 151 RQTGAAVICLAHNRNDQLETLLLR----FLQGSSAASGIPRCREPFV-------RPLLDI 199

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
            R DI  +L    +    D +N D+R+ R + R
Sbjct: 200 GRADILRYLEILAVPHRTDATNFDNRYLRNKCR 232


>gi|265762798|ref|ZP_06091366.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16]
 gi|263255406|gb|EEZ26752.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16]
          Length = 435

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +LV +SGG+DS+ LL  L S+          F         +E+ +DE  +V  +C    
Sbjct: 22  VLVTLSGGADSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I H   +   +K    +  AARE RY       +   A++I TAH  DD +ETV +
Sbjct: 76  VLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREASVIATAHHKDDSVETVLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+      + N  I RP L   RE+I ++L   +  +  D +N  D
Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|134298004|ref|YP_001111500.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum reducens MI-1]
 gi|134050704|gb|ABO48675.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum reducens MI-1]
          Length = 472

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 18/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LV VSGG DS+ LL  L+ +  +     I      ++H  R E A ++  +V ++CS  
Sbjct: 23  VLVGVSGGLDSVVLLHILNCLKEELG---ISLHVAHLNHMFRGEEATEDALFVQELCSNW 79

Query: 81  RIAHSVVSWKNSKPQ----TGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            I  +V   K + P      GL +  AARE RY    +  +      I  AH  +DQ E+
Sbjct: 80  GIPCTV--EKRNVPAYAQARGLSSELAAREVRYQFYDDVREETGGHKIALAHHANDQAES 137

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V M   R     G GL G+        NL+I RP L+  R +I  +  ++ +++  D SN
Sbjct: 138 VLMNMLR-----GSGLKGISGIAPVRDNLYI-RPLLKLLRSEIEQYGQRKGLTFRIDSSN 191

Query: 195 TDDRFERVRVR 205
            +  + R ++R
Sbjct: 192 LEVVYRRNKLR 202


>gi|61216540|sp|Q6NF90|TILS_CORDI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 292

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 26/201 (12%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  VR+ V P  I V +SGG+DS+ L+ AL               A+ VDH L +   
Sbjct: 14  ACRVAVRT-VQPRDITVGLSGGADSLALVAAL-------CAEDYNVHALCVDHGL-QPGS 64

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            EV   +   +R   AH+ +      P   L A AR ARY  +  H++ +    ++  HT
Sbjct: 65  HEVAQQAAHHARTFGAHAEIISVTVAPGN-LEANARTARYQAL--HSRNLP---VVVGHT 118

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ + + R  A      +GM    ++  NLW  RP L  RR    +   +  I 
Sbjct: 119 ADDQAETLLLGALRGKA------TGM---QIHTDNLW--RPLLGVRRATTLAACTELGIE 167

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
              DP N +  F RV +R  V
Sbjct: 168 PWHDPHNANTDFLRVALRTQV 188


>gi|60680868|ref|YP_211012.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC
           9343]
 gi|60492302|emb|CAH07067.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC
           9343]
          Length = 435

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +LV +SGG+DS+ LL  L S+          F         +E+ +DE  +V  +C    
Sbjct: 22  VLVTLSGGADSVALLRLLLSMGYTCEAAHCNFHLRD-----KESDRDEA-FVRRLCHESG 75

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L I H   +   +K    +  AARE RY       +   A++I TAH  DD +ETV +
Sbjct: 76  VLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREASVIATAHHKDDSVETVLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+      + N  I RP L   RE+I ++L   +  +  D +N  D
Sbjct: 136 NLIR-----GTGINGLLGIRPRNGN--IVRPLLCLSREEIIAYLQYIDQDYVTDSTNLLD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYTRNKIR 196


>gi|260943125|ref|XP_002615861.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720]
 gi|238851151|gb|EEQ40615.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720]
          Length = 463

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 12/199 (6%)

Query: 19  PAHILVAVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P  +LVA+SGG DSM L  L+  +  L D    K++   +++DH  R+ +  E   V  +
Sbjct: 20  PGKLLVALSGGVDSMCLTHLLLQYKKLYD---PKLEIHTMTIDHGYRKMSSLEAHEVGRI 76

Query: 77  CSRLRIAHSV--VSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                  H +  +S+ +N    T     AR  RY         +    ++ AH  +D++E
Sbjct: 77  VQSWGAHHYIHRLSYDRNPSSITNFEEVARTMRYNAFERQCDELGIQALLLAHNLNDRIE 136

Query: 134 TVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           T   R Q +    G+G     + M  +      + + RP L+  ++ +R   ++  + W 
Sbjct: 137 TFLQRLQMNSTLYGLGGLKPRATMPISSKSPQQISVFRPLLQFDKQSLRETCVKSGVLWF 196

Query: 190 EDPSNTDDRFERVRVRRFV 208
           ED +N D    +  + R++
Sbjct: 197 EDHTNADLHLTKRNLFRYM 215


>gi|293364526|ref|ZP_06611251.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037]
 gi|307702816|ref|ZP_07639766.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037]
 gi|291317034|gb|EFE57462.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037]
 gi|307623672|gb|EFO02659.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037]
          Length = 425

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 24/199 (12%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66
           F+R   +  H  +++A+SGG DSM L   L +  ++     I+     V+H  R  +   
Sbjct: 10  FLRKEYFKKHSKVVLALSGGLDSMFLFQLLSTYQNELG---IELILAHVNHKQRSESDWE 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           ++E+R ++D  + L I  +  S   S+      A ARE RY    +  K + AT ++TAH
Sbjct: 67  ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKEVGATALVTAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ MR  R    +   L+G+ ++ + D ++ I RP L+  ++D         I
Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKESQVVD-DIEIIRPLLQFHKKDFSP------I 170

Query: 187 SWCEDPSNTDDRFERVRVR 205
              ED +N ++ + R RVR
Sbjct: 171 FHFEDQTNQENTYFRNRVR 189


>gi|304415319|ref|ZP_07396004.1| putative ATPase of the PP-loop superfamily [Candidatus Regiella
           insecticola LSR1]
 gi|304282837|gb|EFL91315.1| putative ATPase of the PP-loop superfamily [Candidatus Regiella
           insecticola LSR1]
          Length = 424

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 5/154 (3%)

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
           AI + H +   A D V +    C + ++   +V  + +  + G+ AAAR ARY   S H 
Sbjct: 31  AIHIHHGINPQANDWVEHCQYQCQQWQVPLEIVPVQLNTRKNGIEAAARAARYHAFSTH- 89

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              +  +++TA   DDQ ET  +  +R       GLS M   + +  +  + RP L C R
Sbjct: 90  -LTDKEVLLTAQHQDDQCETFLLALKR--GSGPTGLSAMASKMAFAQSQ-LLRPLLSCSR 145

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           +++  +  +  I W ED SN D RF+R  +R+ +
Sbjct: 146 QNLMDYAQRHQIQWVEDESNQDRRFDRNFLRQEI 179


>gi|125974740|ref|YP_001038650.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405]
 gi|256005249|ref|ZP_05430216.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360]
 gi|281418791|ref|ZP_06249810.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20]
 gi|125714965|gb|ABN53457.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405]
 gi|255990800|gb|EEU00915.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360]
 gi|281407875|gb|EFB38134.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20]
 gi|316941874|gb|ADU75908.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 1313]
          Length = 470

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           I+V VSGG DS+ LL   H +   R    +   A+ V+H LR  E + DE  +V ++C +
Sbjct: 21  IVVGVSGGPDSVCLL---HILCKLRESMDLGLVAVHVNHMLRGDEASGDEA-FVENLCKK 76

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L +        +     + +  L    R  RY L  E A    A  I  AH  +DQ ETV
Sbjct: 77  LNVELVTRRIDIKKLAKERRLSLEETGRIERYRLFEEVADNFGAQRIAVAHNKNDQAETV 136

Query: 136 YMRSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            M   R     G GL G+   D I       I RP L   R +I ++    N++   D +
Sbjct: 137 LMNIIR-----GTGLDGLRGMDYIRG----RIIRPLLGVERTEIENYCRIHNLNPRIDST 187

Query: 194 NTDDRFERVRVR 205
           N ++ + R ++R
Sbjct: 188 NLENIYTRNKIR 199


>gi|325269878|ref|ZP_08136488.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella multiformis DSM 16608]
 gi|324987851|gb|EGC19824.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella multiformis DSM 16608]
          Length = 456

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 43/267 (16%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           LVA+SGG+DS+ LL+ L      +  G  +  A+  +  LR  E+  DE R+  ++C R 
Sbjct: 22  LVALSGGADSVALLLTL------KELG-YRVEAVHCNFQLRGEESLHDE-RFCQELCRRE 73

Query: 81  RIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    V +      T     +  AAR+ RY    +  +T+ A  +   H  +D +ET+ 
Sbjct: 74  NIPLHKVHFDTRSYATLHKVSIEMAARDLRYHYFFQLKETLGADAVCVGHHEEDSVETIL 133

Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           M   R    KG MG+    D I+        RP L   R +I ++L  RN  +  D +N 
Sbjct: 134 MNLVRGTGLKGLMGIRPKKDGIV--------RPLLCVSRHEIEAYLHARNEPFVTDSTNL 185

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
                R ++R  +           + +  ++   VN A+      +   H+ ++  I Q+
Sbjct: 186 VADVVRNKIRLTI-----------LPRLAEINPSVNEAIL-----HTAEHLSNVDRIVQN 229

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLP 282
           +L   +TL   ++ V + I  G+  +P
Sbjct: 230 VLQ--NTLREAIIPVDSTI--GEEDIP 252


>gi|67924269|ref|ZP_00517706.1| PP-loop [Crocosphaera watsonii WH 8501]
 gi|67853884|gb|EAM49206.1| PP-loop [Crocosphaera watsonii WH 8501]
          Length = 322

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 13/193 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYV 73
           L + +++L+AVSGG DS+ LL  +  +     +       I++ HC    A D     +V
Sbjct: 19  LPHKSNLLIAVSGGQDSLCLLKIMIDLQEKWGWN------IAIAHCDHGWASDLGIADHV 72

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + +   I   +   K +K      AAARE RY  + E A+  +   I+T HT  D+ E
Sbjct: 73  EKIANNWNIPFYL---KVAKAMKETEAAAREWRYQSLVEIAEENDCREIVTGHTLSDRSE 129

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+     R     G+G       +  ++NL   RP L+  R +   F  Q  +   ED +
Sbjct: 130 TLLYNLIRGAGSNGLGALTWKRPLTNNINL--VRPLLKVSRGETLEFCQQFALPIWEDAA 187

Query: 194 NTDDRFERVRVRR 206
           N +  + R R+R+
Sbjct: 188 NANLDYARNRIRQ 200


>gi|332359485|gb|EGJ37304.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1056]
          Length = 425

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L  + S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  ++ E + +  +  +L +     S+  +  +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESEQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I   ED SN  + + R R+R
Sbjct: 168 --PDIQHFEDNSNFQNDYLRNRIR 189


>gi|320547724|ref|ZP_08042009.1| tRNA(Ile)-lysidine synthetase [Streptococcus equinus ATCC 9812]
 gi|320447799|gb|EFW88557.1| tRNA(Ile)-lysidine synthetase [Streptococcus equinus ATCC 9812]
          Length = 421

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  L+  +  ++ G I+     V+H  R  +  E  Y+ D  +  +
Sbjct: 21  VLIAVSGGVDSMNLLHFLY--IYQKNLG-IEIGIAHVNHKQRVESDIEENYLRDWANEYQ 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V  +  +  +      AR+ RY    +     N T ++TAH  DDQ ET++MR  R
Sbjct: 78  IPIYVSYFLGNFSEK----TARDFRYHFFKQIMNEQNYTALVTAHHADDQAETIFMRLLR 133

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSG+     +  N  + RPFL   ++D+       +I   ED SN    F R
Sbjct: 134 --GSRLRHLSGIQAVSPF-ANGELIRPFLAYFKKDL------PDIFHFEDDSNQSLEFLR 184

Query: 202 VRVR 205
            R+R
Sbjct: 185 NRIR 188


>gi|86142944|ref|ZP_01061366.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217]
 gi|85830389|gb|EAQ48848.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217]
          Length = 436

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 19/192 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78
           A  L+AVSGG DS    + L  + S+    KI F     +  LR    D +  +V  +  
Sbjct: 19  ARFLLAVSGGLDS----VVLAHLFSE---CKIDFEIAHCNFNLRGKESDADAVFVEKLAE 71

Query: 79  RLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +L +   + ++         +  +  AARE RY    E  +  +   + TAH   D LET
Sbjct: 72  KLHVKFHLQNFDTEAYAQDQKVSIQMAARELRYHWFEELCQLHHLPFLATAHHAKDDLET 131

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R     G GL+G+  T +   N  + RP L   RE+I ++     ++W ED SN
Sbjct: 132 FLINLSR-----GSGLNGL--TGITAENDRLVRPLLPFSREEILTYAEANTLAWREDSSN 184

Query: 195 TDDRFERVRVRR 206
             D++ R  +R 
Sbjct: 185 ASDKYLRNHLRH 196


>gi|300934617|ref|ZP_07149873.1| cell cycle protein MesJ [Corynebacterium resistens DSM 45100]
          Length = 344

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 15/187 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V +SGG+DS+ LLI     ++ R FG ++  A+ VDH L++ ++            L 
Sbjct: 1   MVVGLSGGADSLALLI-----VAIR-FG-MEVHAVIVDHGLQDGSEQVAETARQQAEDLG 53

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            A + V     +      A AR ARY  + + AK      ++ AHT  D  E V +   R
Sbjct: 54  AASARVIAVQCRADD--EAQARAARYEALGQIAK---GKPVLVAHTASDDAEGVLLSLAR 108

Query: 142 DY---AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                A  GM  +     +++    W+ RP L C R        + N+SW EDP N   R
Sbjct: 109 GSGLDALAGMRAATRDHPVVHAGAGWLGRPLLMCDRAATELVCREANVSWWEDPHNRSSR 168

Query: 199 FERVRVR 205
           + R  VR
Sbjct: 169 YLRSCVR 175


>gi|299140703|ref|ZP_07033841.1| tRNA(Ile)-lysidine synthase [Prevotella oris C735]
 gi|298577669|gb|EFI49537.1| tRNA(Ile)-lysidine synthase [Prevotella oris C735]
          Length = 439

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 148/361 (40%), Gaps = 70/361 (19%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77
           LVA+SGG DS+ LL         R   ++ +  I+V HC   LR  E+ +DE R+  ++C
Sbjct: 16  LVALSGGCDSVALL---------RVMIELGYH-IAVIHCNFQLRGEESERDE-RFCEELC 64

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +  ++    V +   +        +  AARE RY    +  K I A  I+ AH  DD +E
Sbjct: 65  NSQKVPFHRVHFDTREYAELHHISIEMAARELRYQYFEQLRKDICADAILVAHHQDDTVE 124

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV +   R     G G+ G+    +   N  + RP L   R DI ++L     ++  D S
Sbjct: 125 TVLLNLIR-----GTGIHGLQG--IKPKNGHVIRPLLSMTRNDIENYLSSIQQTFITDSS 177

Query: 194 NTDDRFERVRVRR----FVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-- 244
           N     +R ++R      +R+I+     ++ L  K   D+    +NA+   + +   V  
Sbjct: 178 NLIADIKRNKIRLKVLPLLREINPSVSESITLTAKHLNDVAKVFDNALQESVERVTLVRK 237

Query: 245 ---------HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
                     +   I+  Q + +I     F  +++ +  C                L   
Sbjct: 238 ADRYVVDIDKLEREISPEQTLYSILKNFSFSSVQIESIACS---------------LDAP 282

Query: 296 SGKRGCVSIGRVVIDRR----ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
           +GK+   +    VIDR     A  L  +  V  +P    Y     VWD + +F N++  +
Sbjct: 283 TGKKWLSNTHEAVIDRGTLVIAPLLDASNKVLKVPETGCY-----VWDDKVKF-NITSHV 336

Query: 352 I 352
           I
Sbjct: 337 I 337


>gi|33862341|ref|NP_893901.1| hypothetical protein PMT0068 [Prochlorococcus marinus str. MIT
           9313]
 gi|61216599|sp|Q7V987|TILS_PROMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33640454|emb|CAE20243.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 343

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 129/302 (42%), Gaps = 40/302 (13%)

Query: 20  AHILVAVSGGSDSM---GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           A +L+AVSGG DSM   GLLI L      R  G         DH   + +      + + 
Sbjct: 33  ASLLIAVSGGQDSMALLGLLIDL-----QRKHG-WSLEVWHGDHNWHKQSATIATELKNW 86

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTFD 129
           C    +  S  S +    QT   A AR  RY  ++ HA+ +++         ++T HT  
Sbjct: 87  CESHNL--SFCSDQAKPGQTNNEATARHWRYEQLTLHAERLSSNNPNHPCRYVLTGHTSS 144

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNI 186
           D+ ET+ +   R     G+     C  I  D    N+ + RP L   RED      +  +
Sbjct: 145 DRAETLLLNLARGTDLAGLSSMRQCRPISKDHPHKNVQLIRPLLGFSREDTALICSELGL 204

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI--DLH-ALYLKMKKFQDLRVKVNN----AVAMLIP 239
               DP+N++  F R RVR+ V  +   LH    L+M    + R+  ++    A+AML  
Sbjct: 205 PIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLRMAALAE-RLNHHHADQQAIAMLAL 263

Query: 240 KYLTVH---MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
             L+      R  +A  Q  +   +TLL Y L+ S     G  SLP  + +E++   +  
Sbjct: 264 NNLSKQNGLCRKDLA--QLPITARTTLLAYWLKRS-----GAPSLPAVQ-LEQISQSIAP 315

Query: 297 GK 298
           GK
Sbjct: 316 GK 317


>gi|315301121|ref|ZP_07872408.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596]
 gi|313630510|gb|EFR98356.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596]
          Length = 485

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 10/191 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H +       K   S   V+H LRE A  E   V   C +  
Sbjct: 24  LLVAVSGGPDSLALL---HFLRMANLVPKEAISVGHVNHGLRENAVKEQFIVQTYCEKYD 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I        V+ +      G+   AR  RY    +     +   ++ AH  DDQ+ET+ M
Sbjct: 81  IPFFTEKINVNERAKSLHKGIEETARIVRYEFFEKIMAKESINKLVLAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R      +G SG+           I RPFL   + +I  +  +  +++  D SN + 
Sbjct: 141 RLVR--GSSSIGWSGIQPKRSMQGGYAI-RPFLTITKSEIIEYANKHELAYEIDESNYNP 197

Query: 198 RFERVRVRRFV 208
           ++ R R R  V
Sbjct: 198 QYTRNRYREEV 208


>gi|318043039|ref|ZP_07974995.1| MesJ-like protein [Synechococcus sp. CB0101]
          Length = 345

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 14/192 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +L+AVSGG DSM L+  L  +   +   + +      DH LR  +  +   +      
Sbjct: 41  ASLLLAVSGGQDSMALVGLLRDL---QRLHQWRLQLWHGDHRLRADSSRQASELRQWAQH 97

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + SW   +P     AAAR  RY+ +   A+   A  ++T HT  D+ ET+ ++ 
Sbjct: 98  QGLVVQIESWGEPQPSE---AAARAWRYSALEAAARHCGARYVVTGHTASDRAETLLLQL 154

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL---RCRREDIRSFLLQRNISWCEDPSNTD 196
            R    +G+        +  DL+L   RP L   R   E+IR  L    +    D SN++
Sbjct: 155 ARGSHRRGLASLQPQRALAADLSL--VRPLLLFSRLETEEIREQL---GLPLWLDASNSE 209

Query: 197 DRFERVRVRRFV 208
             + R R+R+ V
Sbjct: 210 PCYSRNRLRQEV 221


>gi|94676863|ref|YP_588575.1| tRNA(Ile)-lysidine synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94220013|gb|ABF14172.1| tRNA(Ile)-lysidine synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 486

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 91/190 (47%), Gaps = 10/190 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKI----KFSAISVDHCLRETAKDEVRYVSD 75
           + +++A SGG DS  LL  L S L D +  KI       A+ ++H     + D   +   
Sbjct: 23  SKLVLAFSGGLDSTVLLDILTS-LRDTNNSKITALFSLRAVHINHGFNSNSDDWQIHCEQ 81

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C +  + +  +  +      G+ AAAR ARY  + +  K     +++TA   DDQ+ET+
Sbjct: 82  QCRQRAVPYHFIKVRLKTKNNGVEAAARYARYQALYDVLKP--GEILLTAQHQDDQVETL 139

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R       GLSGM     +  +  + RP L C R  +  +    N++W ED SN 
Sbjct: 140 LLAIKR--GSGPTGLSGMATNANWG-DYRLIRPLLTCSRMQLNRYASYFNLNWIEDDSNK 196

Query: 196 DDRFERVRVR 205
           +DRF+R  +R
Sbjct: 197 NDRFDRNFLR 206


>gi|207722907|ref|YP_002253341.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|206588091|emb|CAQ18671.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 462

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRRED 176
            ATL++TAH  DDQ ETV ++  R     G GL G+    +     + + RP+L   R D
Sbjct: 122 GATLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMERPGGVTLLRPWLDVPRSD 176

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           I +++    ++W EDPSN D R+ R  +R  +  +  H
Sbjct: 177 IETYVRTHALAWVEDPSNHDARYARNALRPLLAGMAGH 214


>gi|291298358|ref|YP_003509636.1| tRNA(Ile)-lysidine synthetase [Stackebrandtia nassauensis DSM
           44728]
 gi|290567578|gb|ADD40543.1| tRNA(Ile)-lysidine synthetase [Stackebrandtia nassauensis DSM
           44728]
          Length = 344

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 19/189 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77
           +LVA SGG DSM L  A   V      G I+   ++VDH L+  +      V+D      
Sbjct: 39  VLVACSGGPDSMALAAATAFVAP--RLG-IRAGLVTVDHGLQAGSAKRAATVADWARDAG 95

Query: 78  -SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
              + +A   V      P+     AAR+ARYA ++E A+ + A+ ++  HT DDQ ETV 
Sbjct: 96  FEPVEVATVEVDVTAGGPE----GAARDARYAALTEAAQRLGASAVLLGHTRDDQAETVL 151

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R    +  GL+ M           +  P    R + +R+        W +DP NTD
Sbjct: 152 LALARGSGPR--GLAAMPRKRRKFRRPLLDLP----RADTVRACRDLELPVW-DDPHNTD 204

Query: 197 DRFERVRVR 205
             + R R+R
Sbjct: 205 PAYARSRLR 213


>gi|302876588|ref|YP_003845221.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B]
 gi|307687263|ref|ZP_07629709.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B]
 gi|302579445|gb|ADL53457.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B]
          Length = 462

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           ++VA+SGG DS+ LL   + +   +    +      V+HC+R  A D +  YV ++  +L
Sbjct: 24  VIVALSGGPDSVVLLHVFNEL---KEVYNLTLYVAHVNHCIRGDAADSDEAYVIELSKKL 80

Query: 81  RIAHSVVSWKNSK--PQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V+  K  +     G+ +  A RE RY    E    + A  I  AH  +DQ ETV 
Sbjct: 81  GIEFFVLREKVEEIARDRGISSEMAGREVRYKFFEELKHKLKADKIAVAHNANDQAETVL 140

Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           MR  R    +G+ G+  + D +         RP +   R +I  +  +  ++   D +N 
Sbjct: 141 MRIMRGSGTEGIEGIKPVRDGVYI-------RPLIDVSRSEIERYCEENGLNPRIDATNL 193

Query: 196 DDRFERVRVR 205
           +  + R +VR
Sbjct: 194 ETIYSRNKVR 203


>gi|241662709|ref|YP_002981069.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12D]
 gi|240864736|gb|ACS62397.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12D]
          Length = 472

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 99/204 (48%), Gaps = 27/204 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDV--CS 78
           + +A+SGG DS  L   LH+  + R  G +++  A+ + H L   A        DV  C+
Sbjct: 41  VAIALSGGRDSAAL---LHACAAWRDAGARVQLVALHIHHGLHADA--------DVWECA 89

Query: 79  RLRIAHSV-VSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             R+A +V V++   +         G+  AAREARYA +        A++++TAH  DDQ
Sbjct: 90  CRRMAQAVGVTFHARRVNVAVDGGRGVEEAAREARYAALEALCTETGASILLTAHHQDDQ 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCE 190
            ETV ++  R     G GL G+    +     + + RP++   R +I  +     + W E
Sbjct: 150 AETVLLQLMR-----GAGLDGLAAMPMARAGAVTLLRPWVDAPRSEIELYAHAHALCWVE 204

Query: 191 DPSNTDDRFERVRVRRFVRDIDLH 214
           DPSNTD R+ R  +R  +  +  H
Sbjct: 205 DPSNTDARYARNALRPLLAGMADH 228


>gi|283797945|ref|ZP_06347098.1| PP-loop family protein [Clostridium sp. M62/1]
 gi|291074411|gb|EFE11775.1| PP-loop family protein [Clostridium sp. M62/1]
 gi|295091863|emb|CBK77970.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Clostridium cf. saccharolyticum K10]
          Length = 241

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 97/211 (45%), Gaps = 18/211 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           I V +SGG DS+ LL AL  +     +SF      AI+VD          +    + CS 
Sbjct: 26  IAVGLSGGKDSLALLYALKHIQKFYPKSF---DLCAITVDLGF---GNFNLEAAQEFCSS 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L + +++V  +       ++ ++   A   + R   +++ AK +    I  AH  DD ++
Sbjct: 80  LCVPYTIVPTEISQVVFETRKESNPCALCAKMRKGALNQAAKNLGCNKIAYAHHRDDLID 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +        +G   S    T L  ++L++ RPFL     DI  F  + ++  C++P 
Sbjct: 140 TMLL----SLIYEGRFHSFSPKTYLDRMDLFVIRPFLYIPEADIIGFKNRYSLPVCKNPC 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
             D + +R  V++ ++ I++ A  +K + F 
Sbjct: 196 PVDGKTKREYVKQLIKTINMEASGVKDRLFH 226


>gi|254522025|ref|ZP_05134080.1| tRNA [Stenotrophomonas sp. SKA14]
 gi|219719616|gb|EED38141.1| tRNA [Stenotrophomonas sp. SKA14]
          Length = 428

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 23/190 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS- 78
           A +LV  SGG DS    + LH +            A+ V H L+  A D VR+    C+ 
Sbjct: 12  APLLVGYSGGVDST---VLLHWLWRCAQASGTPLRAVHVHHGLQSAADDWVRHCQQQCTT 68

Query: 79  ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
               L + H  V+       TGL       +    +  A+  +   ++ A   DDQ ET 
Sbjct: 69  WDIELAVHHVQVA-----VGTGLGIEGAARQARRAAFAAELRDGETLVLAQHQDDQAETF 123

Query: 136 YMRSQRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            +R+ R     G G+ G+      + L   +LW  RP L+  R+ +  +  Q  + W ED
Sbjct: 124 LLRALR-----GSGVDGLAAMSAHSRLGRHSLW--RPLLQVPRDVLLDYARQHTLYWVED 176

Query: 192 PSNTDDRFER 201
           PSN DD  +R
Sbjct: 177 PSNADDHADR 186


>gi|320530147|ref|ZP_08031217.1| tRNA(Ile)-lysidine synthetase [Selenomonas artemidis F0399]
 gi|320137580|gb|EFW29492.1| tRNA(Ile)-lysidine synthetase [Selenomonas artemidis F0399]
          Length = 480

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 81/190 (42%), Gaps = 15/190 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSR 79
           HILVA SGG DS+ LL  L      R  G    +   V+H +R  A + + R+V D C+ 
Sbjct: 37  HILVACSGGVDSLALLDVLDRF---RRAGGAHITCAHVEHGIRGAASRADARFVKDYCAV 93

Query: 80  LRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I  +  +          +  L  +AR  RY  +    +      I TAH  DD  ETV
Sbjct: 94  QGIPFTCAAVDAPAYARAHRMSLETSARILRYEFLYRAREECGCDCIATAHHADDLAETV 153

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G G +G+     +D  L   RP L   R +I S+   R ++   D +N 
Sbjct: 154 LMRILR-----GTGTAGLAAIREWDGVLL--RPLLTATRAEIVSYARARALAPRSDETNE 206

Query: 196 DDRFERVRVR 205
                R R+R
Sbjct: 207 MCDAMRNRIR 216


>gi|290889686|ref|ZP_06552775.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429]
 gi|290480683|gb|EFD89318.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429]
          Length = 299

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 5/189 (2%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DS  L   L    S+    +       VDH LR  + +E + + D  +   
Sbjct: 24  LLLAISGGVDSTVLADLLFKYESN---PRSHLFLAHVDHQLRVDSANETKLIDDQFANRG 80

Query: 82  IAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +      W   K P +G+  AAR+ RY      A  + A  I+ A   DDQ ET  ++  
Sbjct: 81  LCVFHEKWPLEKHPHSGIEDAARKFRYDFYKRMALKVGARKIILAQHADDQAETTLLKII 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRF 199
           R    + +        +  D  + + RP L   + +I  +  + ++ W ED +N D D  
Sbjct: 141 RGADWQTVSAMEWSRPLEKDSPIEVVRPLLNVEKSEIYDYAEKNHLKWIEDSTNKDPDYT 200

Query: 200 ERVRVRRFV 208
            R ++R  V
Sbjct: 201 SRNQIRNVV 209


>gi|28899075|ref|NP_798680.1| cell cycle protein MesJ [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839744|ref|ZP_01992411.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio
           parahaemolyticus AQ3810]
 gi|260362390|ref|ZP_05775345.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus K5030]
 gi|260876843|ref|ZP_05889198.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AN-5034]
 gi|260897275|ref|ZP_05905771.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus Peru-466]
 gi|61217347|sp|Q87MF4|TILS_VIBPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28807299|dbj|BAC60564.1| cell cycle protein MesJ [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746728|gb|EDM57716.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio
           parahaemolyticus AQ3810]
 gi|308085351|gb|EFO35046.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus Peru-466]
 gi|308091370|gb|EFO41065.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AN-5034]
 gi|308113972|gb|EFO51512.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus K5030]
          Length = 438

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 23/195 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----KDEV--RYVS 74
           ++VA SGG DS  LL  L     + S   +   A+ V H L E A     K +V  +   
Sbjct: 22  VVVAFSGGVDSRLLLELLRRYREENS---LSCHAVYVHHGLSENADIWADKCQVWAKQAG 78

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLE 133
             CS  R+        NS     L+A  REARY  ++ H   IN   L++T    DDQ+E
Sbjct: 79  ISCSVERVNLDT----NSGESIELLA--REARYEALARH---INRGDLLLTGQHADDQVE 129

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R    KG  LS M +++ +     + RP L  +RE I +      + W ED S
Sbjct: 130 TFLLALKRGSGPKG--LSSMAESMPFAGGTLV-RPLLNTKREQIEATAKNIGLEWVEDES 186

Query: 194 NTDDRFERVRVRRFV 208
           N D R++R  +R  +
Sbjct: 187 NQDTRYDRNFLRHRI 201


>gi|170088506|ref|XP_001875476.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650676|gb|EDR14917.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 487

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 32/224 (14%)

Query: 16  LVYPAH---ILVAVSGGSDSMGLLIALHSVLSDR---SFGKIKFSAISVDHCLRETAKDE 69
           L++P+    + VA SGG DS  LL  ++  L +    S    +  + +VDH L++ + D 
Sbjct: 15  LIWPSSRTSLAVANSGGPDSTCLLFLINRYLLEHPGSSSQPQRVISFTVDHDLQKKSSDM 74

Query: 70  VRYVSDVCSRLRIAH--SVVSWKNS----KPQTGLM--AAAREARYALISEHAKTINATL 121
             +       + + H  S + W       +P  G M    AR+ARYAL+ +     +  +
Sbjct: 75  ANHCRLFAQSIGVEHITSKIPWGEGVYPPRPSPGDMFERTARDARYALLLQTLTRADVDV 134

Query: 122 IMTAHTFDDQLETVYMR-----------SQRDYAEKGMGLSGMCDTIL-----YDLNLWI 165
           +   H  DDQ+ET  MR             R     GMG +G+ +  L       ++ WI
Sbjct: 135 LAVGHHADDQVETALMRLGMGSTQLGAGGMRACRRWGMG-AGIDERSLSWAGHKGMSKWI 193

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV 208
            RP L   ++ I +   Q N+ +  DP+N       R  +RR +
Sbjct: 194 VRPLLDVGKDRILATCEQNNLEYITDPTNFQPHITIRNAIRRLI 237


>gi|125716899|ref|YP_001034032.1| PP family ATPase [Streptococcus sanguinis SK36]
 gi|166988067|sp|A3CJX7|TILS_STRSV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|125496816|gb|ABN43482.1| Cell cycle control ATPase, PP-loop superfamily, putative
           [Streptococcus sanguinis SK36]
          Length = 425

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +L+AVSGG DSM LL  L  ++S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IVSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +  +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I   ED SN  + + R R+R
Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189


>gi|325124579|gb|ADY84102.1| cell cycle protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 417

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K   I +DH L+  + +    V+   + L I +++   K       L A AR+ARY    
Sbjct: 8   KIRIIYIDHQLQSKSAEWGELVAKQATHLNIPYTIQ--KVQVTDGNLEAQARQARYQAYL 65

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPF 169
           +H +  N  L++ AH   DQ ETV +R        G G+ G+    +I + +++ I RPF
Sbjct: 66  QHLQA-NEILVL-AHHQQDQAETVILR-----LLSGTGVDGLAAMQSIDHRVDMTIWRPF 118

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           L   RE I  +  Q  I +  DP+N D  ++R   R 
Sbjct: 119 LDLTREQIAEWTTQLEIEYVVDPTNYDIHYDRAWSRE 155


>gi|120553850|ref|YP_958201.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8]
 gi|120323699|gb|ABM18014.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8]
          Length = 445

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 14/197 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V+ L     + VA+SGG DS    + LH V +  ++ +++  A+ ++H L+       R 
Sbjct: 21  VQKLPACQELWVALSGGLDSS---LLLHVVAA--AYPRVR--ALHINHQLQSNHDQTERA 73

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             D+C+ L +   V     +     L  +AR ARY +  E     +  L++ AH  DDQ 
Sbjct: 74  CIDLCAGLGVELQVRRVNVATGAGSLEESARAARYEVFRE--VLGDNDLLLMAHHADDQA 131

Query: 133 ETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ETV  R  R     G  L+GM     L   +L+  RP+L   R  +     ++ +SW ED
Sbjct: 132 ETVLFRLLRGTGVNG--LAGMPVSRSLGRGHLY--RPWLGVSRSRLEQVAREQGVSWAED 187

Query: 192 PSNTDDRFERVRVRRFV 208
           PSN  +  +R  +R  V
Sbjct: 188 PSNQSEVHDRNYLRHSV 204


>gi|226945924|ref|YP_002800997.1| PP-loop-tRNA(Ile)-lysidine synthetase [Azotobacter vinelandii DJ]
 gi|226720851|gb|ACO80022.1| PP-loop-tRNA(Ile)-lysidine synthetase [Azotobacter vinelandii DJ]
          Length = 435

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 12/187 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS  LL  L  +   R       +A+ V H L+  A D   +   VC++L + 
Sbjct: 22  LAFSGGLDSSVLLHLLAGL--ARHHALPPLTALHVHHGLQSVADDWPEHCRQVCAQLGVP 79

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQRD 142
             +   +  +   G  +  R AR A     A+ + A  +++TA   DDQ ET+  R  R 
Sbjct: 80  LVI---RRVRVAAG-ASLERAAREARYRAFAEALGADEVLLTAQHLDDQAETLLFRLLRG 135

Query: 143 YAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              +G+  + GM          W+ RP L   R ++  + + R + W EDPSN D RF R
Sbjct: 136 AGVRGLAAMPGMRPLG----RGWLVRPLLEVSRGELEHYAVSRALHWIEDPSNRDLRFSR 191

Query: 202 VRVRRFV 208
             +R  V
Sbjct: 192 NFLRHRV 198


>gi|284036229|ref|YP_003386159.1| tRNA(Ile)-lysidine synthetase [Spirosoma linguale DSM 74]
 gi|283815522|gb|ADB37360.1| tRNA(Ile)-lysidine synthetase [Spirosoma linguale DSM 74]
          Length = 446

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 17/191 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISVDHCLRETAKDEVRYVSDVC 77
           +L+AVSGG DSM +    +      S   + FS    A   D    E   +   Y     
Sbjct: 22  VLLAVSGGIDSMVMAELFYRSGQPFSIAHVNFSMRGAASGADAVFVENKANG--YGVPFH 79

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           S +R     V+++       +  AARE RYA  S+     + T + TAH  +D LET+ +
Sbjct: 80  S-IRFDTKAVAYERG---ISIQMAARELRYAWFSQLLSEFSYTCLATAHHKNDVLETLLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G GL+G+   IL + N  + RP L   R+ + ++ +  ++ + ED SN D 
Sbjct: 136 NLTR-----GTGLAGL-HGILANQNQ-VVRPLLFATRDQVVAYAIANSLEYREDSSNADV 188

Query: 198 RFERVRVRRFV 208
           ++ R R+R  V
Sbjct: 189 KYARNRIRHHV 199


>gi|284008503|emb|CBA75013.1| tRNA(Ile)-lysidine synthetase [Arsenophonus nasoniae]
          Length = 446

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 6/180 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV  SGG DS  LL AL + L   +   +   A+ + H L + A D   +   VC  L+
Sbjct: 22  VLVGFSGGLDSTVLLHALVT-LRQTAVPNLNIRAVYIHHGLNDKADDWAIHCQQVCCDLQ 80

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +A           + G+ AAAR+ARY    E    +   +I+TA   DDQ ET  +  +R
Sbjct: 81  VAFYSQPVYIDPTKKGIEAAARDARYRAFRE--ILLPEEIIVTAQHLDDQAETFLLALKR 138

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GLS M  ++ +  + ++ RP L   R+ +  +  ++ +SW ED SN D R++R
Sbjct: 139 --GSGPAGLSAMPISMPF-ADSYLIRPLLSFSRQQLVVYAQKKALSWIEDDSNQDQRYDR 195


>gi|57233795|ref|YP_182129.1| PP-loop family protein [Dehalococcoides ethenogenes 195]
 gi|57224243|gb|AAW39300.1| PP-loop family protein [Dehalococcoides ethenogenes 195]
          Length = 470

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 107/244 (43%), Gaps = 16/244 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCS 78
            IL+AVSGG DS+ +L  +H +  +  F         ++H LR  E+ +D         +
Sbjct: 20  EILLAVSGGPDSVCMLYIMHKLSCEMGF---SLRLAHLNHSLRGEESERDAAYVAELAAA 76

Query: 79  -RLRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             + +    VS K  + +  L    AARE RYA +   A    +  +   HT DD +ETV
Sbjct: 77  LGVPLCQQKVSVKAYQAEHHLSTEEAAREMRYAFLCRTAAEYGSAAVAVGHTTDDNIETV 136

Query: 136 YMRSQRDYAEKGM-GLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +   R    +G+ GL  + + T+  +  L + RP L   R + +++  +  +S  +D +
Sbjct: 137 MLHLVRGSGTRGLQGLRPVLNRTVAGEGCLRVIRPLLGLSRAETQNYCCEAGLSPVQDVT 196

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVHMRSIIA 251
           N      R R+R  V    L  L      F++  LR        M +   +T  M++ + 
Sbjct: 197 NQSTDLLRNRIRLEV----LPMLRGINPAFEETILRTAFIAGEEMALLDEVTSQMKAELV 252

Query: 252 ISQD 255
           I QD
Sbjct: 253 IRQD 256


>gi|42560602|ref|NP_975053.1| hypothetical protein MSC_0042 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|61216536|sp|Q6MUI9|TILS_MYCMS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|42492098|emb|CAE76695.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320504|gb|ADK69147.1| tRNA(Ile)-lysidine synthetase [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 401

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DS+ LL  +  ++              V++  R  + ++   V+++C +L +
Sbjct: 13  LIAVSGGPDSVFLLCNIVKLVDPNDL-----VVCHVNYNFRSDSNNDQMIVTNLCKQLNL 67

Query: 83  AHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              +++     S  +    + AR  RY   +  A       ++ AH  +D +ET  ++ Q
Sbjct: 68  KLEILNINKDYSLLKQNFESWARAQRYDFFNMIASKYQIYNLLVAHNLNDLIETYLLQLQ 127

Query: 141 RDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+      GL   S   D ++Y       RP L  ++  I ++L    IS+  D +N+D 
Sbjct: 128 RNNLVDYYGLKPVSHYKDLVVY-------RPLLDIKKSQILNYLNTNKISYAVDSTNSDI 180

Query: 198 RFERVRVR 205
           +++R ++R
Sbjct: 181 KYQRNKIR 188


>gi|326803019|ref|YP_004320837.1| tRNA(Ile)-lysidine synthetase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650784|gb|AEA00967.1| tRNA(Ile)-lysidine synthetase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 472

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 6/185 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DSM LL    ++   ++   + F  I ++H LR  ++ E   +   C    + 
Sbjct: 31  LAVSGGVDSMVLLRCFETL---QAIHGLNFFVIHINHRLRLESEAEQEMMVAYCQERDLD 87

Query: 84  HSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR-SQR 141
             V  W++     G + A AR  RY    +  K   +  ++TAH  DDQ+ET  MR    
Sbjct: 88  LKVSIWQHGADLAGNVEAKARAFRYHAFGKILKDKASLRLVTAHHSDDQVETGLMRLVHG 147

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            +     G+  +     Y     I RP L   +  +        I + ED +N D  F+R
Sbjct: 148 GHLASFKGMESLSPLYTYP-KAQILRPLLEVEKASLYDIARVEGIPYQEDMTNWDKHFQR 206

Query: 202 VRVRR 206
            R R+
Sbjct: 207 NRFRQ 211


>gi|158312163|ref|YP_001504671.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EAN1pec]
 gi|158107568|gb|ABW09765.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EAN1pec]
          Length = 608

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 97/207 (46%), Gaps = 17/207 (8%)

Query: 6   IESVRFFVRSLVY---PAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           + +VR  VR  V    P   +LVA SGG+DS+ L  AL  V   R+   ++   ++VDH 
Sbjct: 6   VAAVRLAVRDAVADVPPGGLVLVACSGGADSLALAAALAFVAPRRA---LRAGLLTVDHG 62

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
             +T++     V+    RL     V       P++    AAR++R A +    + + A  
Sbjct: 63  WDDTSRPRAEEVA-ASGRLLGLSPVEVLAAPSPRS--EGAARDSRRAALLAAGERLGAHA 119

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +R  R    +   LSGM  T     +  I RP LR RR+  R   
Sbjct: 120 VLLGHTLDDQAETVLLRLARGSGAR--SLSGMPAT-----DGAIRRPLLRLRRDQTRQAC 172

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
               + + +DP+N D  F R R R  V
Sbjct: 173 QSLGLEFWDDPTNADPAFARARTRSTV 199


>gi|148238412|ref|YP_001223799.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 7803]
 gi|147846951|emb|CAK22502.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 7803]
          Length = 350

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 23/208 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +L+A+SGG DSM LL  L  +     +          DH     +      ++  C +  
Sbjct: 43  LLLALSGGQDSMALLGLLRDLQKHHHW---TLQLWHGDHGWHPGSAAVADALAQWCDQQA 99

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN------ATLIMTAHTFDDQ 131
             LR++ S  +       TG  AAAR  RY+ +S+ A+ +N      A  ++TAHT  D+
Sbjct: 100 LPLRVSRSTAA------ITGSEAAARAWRYSELSQTAQQLNEAGAAGACTVLTAHTASDR 153

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWC 189
            ET+ M+  R     G+G       +  + +    + RP L   R++  +     ++   
Sbjct: 154 AETLLMQLSRGTDLAGLGSLRQSRPLQANSSHGPRLVRPLLDFTRDETAAICQDLHLPVW 213

Query: 190 EDPSNTDDRFERVRVRRFVRDI--DLHA 215
            DPSN+D R ER R+R+ V  +   LHA
Sbjct: 214 HDPSNSDLRIERNRIRQEVLPVLESLHA 241


>gi|152993772|ref|YP_001359493.1| tRNA-lysidine synthase [Sulfurovum sp. NBC37-1]
 gi|151425633|dbj|BAF73136.1| tRNA-lysidine synthase [Sulfurovum sp. NBC37-1]
          Length = 323

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 22/191 (11%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-A 83
           A S G DS  L   L           I+F    VD+ +RE +K+E+ +   +    ++  
Sbjct: 16  AFSAGVDSSALFFLLIE-------NNIRFDIAIVDYNIREQSKNELAHAKALAKEHKLFC 68

Query: 84  HSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           H++ +     P   T   + AR+ RY       +T     ++TAH  +DQLE + MR   
Sbjct: 69  HTIQA-----PMFDTHFESKARKFRYKFFESLIQTEGYDNLITAHQLNDQLEWLLMR--- 120

Query: 142 DYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               KG G+S +   + + +  N  + RP L   ++++  +L + N  +  D SN D ++
Sbjct: 121 --LTKGAGVSELIGLEPVTHRENYTLVRPLLEYSKDELLIYLKENNHPYFIDESNIDVKY 178

Query: 200 ERVRVRRFVRD 210
           ER   R+   D
Sbjct: 179 ERNLFRKQFSD 189


>gi|104783178|ref|YP_609676.1| cell cycle protein MesJ [Pseudomonas entomophila L48]
 gi|95112165|emb|CAK16892.1| putative cell cycle protein MesJ [Pseudomonas entomophila L48]
          Length = 431

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 82/190 (43%), Gaps = 18/190 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           VA SGG DS  LL     +L+D  R        AI V H L+  A     +   VC+ L 
Sbjct: 19  VAFSGGLDSTVLL----HLLADYARHHPAPPLRAIHVHHGLQAAADAWPDHCRAVCAALG 74

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQ 140
           I   V+      P   L  AAR ARY    +    +N   ++ T    DDQ ET+  R  
Sbjct: 75  IELDVIP-VQVAPGASLEQAARNARYGAFEQ---LLNPGDVLFTGQHRDDQAETLLFRLL 130

Query: 141 RDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R     G GL G+    ++ +     + RP L   R+ ++++     + W +DPSN D  
Sbjct: 131 R-----GAGLRGLSAMPVHRVLGRGGLVRPMLGLSRQRLQAYAEAHGLVWVDDPSNRDTA 185

Query: 199 FERVRVRRFV 208
           F R  +R  V
Sbjct: 186 FARNFLRGEV 195


>gi|218782103|ref|YP_002433421.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763487|gb|ACL05953.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 480

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 15/209 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +    +    L   A +L  VSGG DS  L+  L  +   + F  ++     V+HC
Sbjct: 13  FLEKVRQALYEQGLLFRGARVLAGVSGGPDSTALVHVLSRL--QKEFA-LQLGVAHVNHC 69

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAH--SVVSWKNSKPQTGL--MAAAREARYALISEHAKT 116
           LR E +  +  +V ++ + L +      V    ++ ++GL    AAREAR A  S   + 
Sbjct: 70  LRGEESDRDALFVQELANSLDVPFHMETVDVAAARKESGLSLEEAAREARKAFFSRAMQE 129

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                +   H  DD  E + +   R     G G  G+    +  +N    RP  +  R++
Sbjct: 130 HGYDFVALGHHADDNAEWMLISLIR-----GAGAGGLSG--IPPVNGKTVRPLFKLTRKE 182

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           I  +  +  + W +D +N D    R ++R
Sbjct: 183 ILKYCRENALKWVQDSTNQDQSILRNQIR 211


>gi|325849662|ref|ZP_08170865.1| tRNA(Ile)-lysidine synthetase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480003|gb|EGC83081.1| tRNA(Ile)-lysidine synthetase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 463

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 80/188 (42%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS  L+  L+ +   + F KI      ++H  R+ A D+   V +   +L 
Sbjct: 27  IIVGASGGPDSQFLIYLLNEL---KDFYKIDIILAHLNHMHRQDAIDDENLVIETGKKLS 83

Query: 82  ----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               ++H  +     + +     A R  RY   +   K      I  AH  DDQ ETV M
Sbjct: 84  LKTYVSHKSMDDYAKEKKISSENAGRILRYEFFNSLKKNYKNAKIAVAHNMDDQAETVLM 143

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G GL G+   + Y  N  I RP +  ++  I  FL    I +  D +N   
Sbjct: 144 RIIR-----GSGLDGLK-AMDYK-NGHIIRPIMDFKKSQILKFLDYNKIDYHIDYTNLQR 196

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 197 DYTRNKIR 204


>gi|294673632|ref|YP_003574248.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23]
 gi|294473514|gb|ADE82903.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23]
          Length = 433

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 28/200 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRY 72
           Y  H LV +SGG+DS+ LL+    +L D  +       I   HC   LR  E+ +DE ++
Sbjct: 18  YDLH-LVGLSGGADSVALLL----ILKDLGY------RIEAAHCNFRLRGEESDRDE-QF 65

Query: 73  VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V ++C +  I   V+ +   +     +  +  AAR+ RY    +  + I AT +  AH  
Sbjct: 66  VRNLCKQHDIPLHVIHFDTKEYAALHKVSIEMAARDLRYGYFRQLCQDIGATDVCIAHHR 125

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET+ M   R     G G+ G+  T +   N  + RP L   R++I  +L      +
Sbjct: 126 DDAVETLMMNLSR-----GAGIHGL--TGIRPKNDIVRRPLLCINRQEILEYLDSIGQPY 178

Query: 189 CEDPSNTDDRFERVRVRRFV 208
             D SN +    R ++R  V
Sbjct: 179 VTDSSNLEADVLRNKLRLMV 198


>gi|240047433|ref|YP_002960821.1| tRNA(Ile)-lysidine synthase [Mycoplasma conjunctivae HRC/581]
 gi|239985005|emb|CAT04998.1| tRNA(Ile)-lysidine synthase [Mycoplasma conjunctivae]
          Length = 295

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A+SGG+DSM LL        DR F K       V++ LR+ +  E   V   C +  I
Sbjct: 10  LLAISGGADSMYLL--------DR-FKKFDIIVAHVNYNLRKQSILEQDLVEKYCQKNNI 60

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            + ++  KN + ++   + AR  RY   S+  +  +   ++ AH  DD LET+ M+  ++
Sbjct: 61  TYQILELKNIEYKSNFQSEARNLRYKFFSQVYQKYHCDYLVIAHHSDDFLETILMQKLKN 120

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFL 170
                 G+    +   + + +W  RP +
Sbjct: 121 KIVNFWGIKAKINN--FGMQIW--RPLI 144


>gi|323345484|ref|ZP_08085707.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella oralis ATCC 33269]
 gi|323093598|gb|EFZ36176.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella oralis ATCC 33269]
          Length = 444

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 86/192 (44%), Gaps = 27/192 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77
           +VA+SGG+DS+ LL+ L      +  G +    I   HC   LR  E+ +DE  +   +C
Sbjct: 25  VVALSGGADSVALLLTL------KRLGYV----IDAAHCNFHLRGEESQRDE-EFCISLC 73

Query: 78  SRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I    +H          +  +  AARE RY   ++    I A  +  AH  DD +E
Sbjct: 74  KRENIRLHRSHFDTKAYAELHKISIEMAARELRYHYFNQLIHDIGAQGVCVAHHRDDSVE 133

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV +   R     G G+ G+C     + N  + RP L   R DI  +L Q +  +  D S
Sbjct: 134 TVLINLIR-----GTGIHGLCGIAARNGN--VLRPLLCVSRLDILEYLKQLHQEFVVDSS 186

Query: 194 NTDDRFERVRVR 205
           N  D   R ++R
Sbjct: 187 NLIDDVLRNKIR 198


>gi|293191233|ref|ZP_06609166.1| tRNA(Ile)-lysidine synthetase [Actinomyces odontolyticus F0309]
 gi|292820654|gb|EFF79623.1| tRNA(Ile)-lysidine synthetase [Actinomyces odontolyticus F0309]
          Length = 215

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 7/190 (3%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           S+  F+  +  P  ++V +SGG+DS+ L +    V +      I    ++VDH LR  + 
Sbjct: 27  SLTSFIDKVGAPPALVVGLSGGADSLALALTTIDVAA---RAGIPVVTVTVDHGLRAGSG 83

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +E R V+D    L  A +VV   + +   G   +AR+AR A +   A+   A +++  HT
Sbjct: 84  EEARCVADRAESLG-ARAVVETVSVEGPGGPEGSARDARRAALRAVAQREGAPILL-GHT 141

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R        L  +      D  +   RP L  RR D      Q  ++
Sbjct: 142 MDDQAETVLLRLARGSGPS--SLRAIAPVSRDDDGVTWLRPLLGLRRTDTEQACAQAGLT 199

Query: 188 WCEDPSNTDD 197
             +DP+N  D
Sbjct: 200 PIQDPTNDID 209


>gi|258544242|ref|ZP_05704476.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826]
 gi|258520480|gb|EEV89339.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826]
          Length = 436

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA  L+A+SGG DSM LL AL      R+       A  V+H       D   +     +
Sbjct: 18  PAAFLLALSGGRDSMALLQAL---TLRRARLAAPLLACYVNHGWSAAGADWGAFCQREAT 74

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              +   +V    +       A AR  RY  ++  A+     +++TAH  DDQ ET  ++
Sbjct: 75  ARDVPCEIVKLDWADGGGNAEARARTLRYQALA--ARLPPRGVLLTAHHRDDQAETFILQ 132

Query: 139 SQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + R     G GL G+              W  RP L   R  I +F+    +++ +DPSN
Sbjct: 133 ALR-----GSGLDGLAAMPARRAFAGGEHW--RPLLDVPRAAIEAFVAAEGVAYLDDPSN 185

Query: 195 TDDRFERVRVR 205
            D  + R R+R
Sbjct: 186 ADPHYARNRLR 196


>gi|295670353|ref|XP_002795724.1| PP-loop family protein [Paracoccidioides brasiliensis Pb01]
 gi|226284809|gb|EEH40375.1| PP-loop family protein [Paracoccidioides brasiliensis Pb01]
          Length = 626

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGGSDSM L      ++S+R    +      VDH  RE + +E   V+    
Sbjct: 43  PSRIALAVSGGSDSMALAFLSKQLISERLIPDLNVKPFIVDHKAREGSTEEAHKVASWLK 102

Query: 79  RLRIAHSVVS--WKNSKPQTGL---MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+++  W +    + L     +AR+ RY ++    K  N   +   H  DD +E
Sbjct: 103 DLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTVE 162

Query: 134 TVYMRSQRDYAEKGMGLSGMC 154
           TV  R  R    +  G +G+ 
Sbjct: 163 TVLSRLVRG-QRQASGFTGVA 182


>gi|315650239|ref|ZP_07903312.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487484|gb|EFU77793.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 495

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 29/203 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           I++ VSGG+DS+ LL  L+ +   +   +I+   + ++H +R  E ++DE  YV + C +
Sbjct: 23  IVLGVSGGADSICLLHTLNEL---KKALEIRLFVVHINHGIRGEEASRDE-NYVREFCKK 78

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAAREARYALISEHAK--------TINATLIMTA 125
           L +     S+  S P+   M       A R+ARY      +K         I+   I  A
Sbjct: 79  LNV--EFFSFHYSIPKVADMLKISEEEAGRKARYDSFENVSKDISKIEKIDISKIKIAVA 136

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +D  ET+     R     G G+SG+   +    N  I RP L   R++I  +L +  
Sbjct: 137 HNKNDTAETMLHNLTR-----GSGISGLKGILAK--NGRIIRPLLSFTRDEIEEYLDKNK 189

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           I +  D +N ++ + R  +R  V
Sbjct: 190 IKYMTDSTNLENEYTRNILRNKV 212


>gi|300780433|ref|ZP_07090289.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium genitalium ATCC 33030]
 gi|300534543|gb|EFK55602.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium genitalium ATCC 33030]
          Length = 289

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 16/187 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DS+ L+ A  +   D         A+ VDH L+E +             L +
Sbjct: 12  VIGLSGGPDSLALVAAAAAEGCD-------MRAVVVDHGLQEGSASVAEQARAAAETLGV 64

Query: 83  AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             ++V  +  + P   + AAAREARY  +   A+  + + +  AHT DDQ ET+ + + R
Sbjct: 65  TATIVRVEVETAPGESVEAAAREARYQALFAEAEA-DGSDVWVAHTLDDQAETLLLGALR 123

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  G+S + +T    L     RPFL+ RR +      +  +    DP N D  + R
Sbjct: 124 GNP---AGMSPVTETASGRL----VRPFLQIRRAETVGACEELGLQPWHDPMNDDTAYRR 176

Query: 202 VRVRRFV 208
           V VR+ +
Sbjct: 177 VAVRKSI 183


>gi|194246666|ref|YP_002004305.1| tRNA(Ile)-lysidine synthase [Candidatus Phytoplasma mali]
 gi|193807023|emb|CAP18459.1| tRNA(Ile)-lysidine synthase [Candidatus Phytoplasma mali]
          Length = 415

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 98/209 (46%), Gaps = 21/209 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           +++VSGG DSM LL    +VL  ++   I+ + +  +H  R E+ KD++  V + C +  
Sbjct: 16  IISVSGGVDSMVLL----NVLFHKN---IRLAVVHFNHLKRKESFKDKI-LVENYCLKNN 67

Query: 82  IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I      +   KP        +R  R   +   A       I+TAH  DD  E ++M+  
Sbjct: 68  IP---FFYFEIKPLSNNFQNESRLLRQKNLQSVALLYRTYYIITAHHLDDLAENIFMKIS 124

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R      +G SG         + +  +PFL   +++I ++  + NI + +D +NT D ++
Sbjct: 125 R--GSSLLGYSGGMQVKQKISDFYFLKPFLYVNKKEILNYAKKNNIHYLDDITNTLDIYK 182

Query: 201 RVRVRR-----FVRDIDLHALYLKMKKFQ 224
           R  +R      F +DI+    ++K+  FQ
Sbjct: 183 RNEIRNQIIPWFKKDINFLK-HIKIYHFQ 210


>gi|291518254|emb|CBK73475.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Butyrivibrio fibrisolvens
           16/4]
          Length = 415

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 18/174 (10%)

Query: 46  RSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTG--LMA 100
           R    +   A+ V+HC+R E A ++  YV  +C   ++   VV         +TG     
Sbjct: 10  REEYNLDIHALHVNHCIRGEDADEDQAYVESICRDYQVPLKVVRVDIPALVKETGRSEEE 69

Query: 101 AAREARYALISEHAKTI------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154
            AR ARY     +A  +      +   I  AH  DD  ETV     R     G GL GMC
Sbjct: 70  EARMARYEAFEAYADELSKESQADNVKIAIAHNADDNAETVIFHMAR-----GTGLDGMC 124

Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
              +      I RP L   + +I  F+ +  IS+C D +N+   ++R R+R  +
Sbjct: 125 G--IAPTRGRIIRPLLEVPKAEIMEFIQENEISYCVDETNSMVCYDRNRIRHNI 176


>gi|308272159|emb|CBX28766.1| hypothetical protein N47_L13640 [uncultured Desulfobacterium sp.]
          Length = 490

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80
           ILV VSGG+DS+ L+  L+ +    S   +K     ++H LR+  + D+  +V+ +  +L
Sbjct: 32  ILVGVSGGADSVTLIHVLYEIAPIFS---LKLGIAHLNHSLRKNESDDDAGFVNALSKKL 88

Query: 81  R----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
                I    V+   ++ +  +  A R  RYA   + A       I   HT +D  E V 
Sbjct: 89  NLPCFIEKKDVTKYKTENKLSVEEAGRRMRYAFFEDIAIKEGFNKIALGHTANDNAELVL 148

Query: 137 MRSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           M   R      +G+SG+      L + NL I RP ++  R +I  ++  + +S   D SN
Sbjct: 149 MYLLRGSGP--LGISGIPPLRGGLKN-NLLIIRPLIKTLRPEIEGYISCKGLSHIIDKSN 205

Query: 195 TDDRFERVRVR 205
            D+++ R ++R
Sbjct: 206 MDEKYLRNKIR 216


>gi|290958428|ref|YP_003489610.1| hypothetical protein SCAB_39801 [Streptomyces scabiei 87.22]
 gi|260647954|emb|CBG71059.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 388

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 21/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G ++   I+VDH L+  +  ++R   +V  RLR
Sbjct: 89  VLVACSGGADSMALASAL--AFEAPKLG-VRAGGITVDHGLQPGS--DLR-AEEVVLRLR 142

Query: 82  -----IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                 A SV     ++  P+     A   A  A +  H     A  ++  HT DDQ ET
Sbjct: 143 ELGLDPAESVAVTVGRDGGPEAAARDARYAALDAALERH----GAAAVLLGHTRDDQAET 198

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   LSGM      D      RPFL+  R+  R   + +++   +DP N
Sbjct: 199 VLLGLARGSGIR--SLSGMAAVSGADGRY--RRPFLQLDRQTARKACMVQSLPVWDDPHN 254

Query: 195 TDDRFERVRVR 205
           TD  + R R+R
Sbjct: 255 TDPAYTRSRLR 265


>gi|269123409|ref|YP_003305986.1| tRNA(Ile)-lysidine synthetase [Streptobacillus moniliformis DSM
           12112]
 gi|268314735|gb|ACZ01109.1| tRNA(Ile)-lysidine synthetase [Streptobacillus moniliformis DSM
           12112]
          Length = 397

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 129/315 (40%), Gaps = 62/315 (19%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF + IE  +   ++      IL+A S G DS+ LL  L  +  + +   ++     V+H
Sbjct: 1   MFRNFIERNKLIEKN----DKILIAFSAGPDSVFLLEKLLEIKDEYN---LQLHLGYVNH 53

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R+    ++  V  + ++  + +S++  K  K        ARE RY+ +S+  K I  T
Sbjct: 54  NFRDDVHKDMELVKKIANKYNLEYSILDIKLEKFTE---EKARELRYSALSDLKKRIKFT 110

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC------DTILYDLNLWISRPFLRCRR 174
            I T H   D  ET+  R  R     G GL G+       D I+        RP L   +
Sbjct: 111 KIATGHNKTDNAETIIFRIIR-----GTGLDGLEGIRIKRDDII--------RPILYISK 157

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
           ++I   L Q    +  D +N ++ + R ++R  V  I                      +
Sbjct: 158 DEI---LKQVYNEYVIDKTNLENNYSRNKIRNLVFPI----------------------L 192

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
           A +  KY+     +I+ I ++I+NI+     Y+L     +    ISL   + +E++   L
Sbjct: 193 AEINSKYID----NIVKIHKNIININDEKYEYILN---KLNEKNISLNT-KKIEQIYNIL 244

Query: 295 KSGKRGCVSIGRVVI 309
              +   + +G   I
Sbjct: 245 DKNESKIIDLGNEYI 259


>gi|145296694|ref|YP_001139515.1| hypothetical protein cgR_2599 [Corynebacterium glutamicum R]
 gi|140846614|dbj|BAF55613.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 297

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 88/188 (46%), Gaps = 20/188 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+ + +SGG DS+ L+ A   VL+++S    + +AI +DH L +    EV + +   +R 
Sbjct: 14  HVHIGLSGGPDSLALVAA---VLAEKS----QVTAICIDHNL-QAGSAEVTHNAAAMARH 65

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
             A ++V      P  G+ AAAREARYA  ++    I       AHT DDQ ET  +   
Sbjct: 66  MGAQAIVKSIEVAPGEGMEAAAREARYAAFAQLTDEI-----WVAHTMDDQAETYLLGGL 120

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R         +GM D       L I RP L  RR       ++  +    DP N DD F 
Sbjct: 121 RGNP------AGMKDASRRP-ELSIIRPLLGARRAHTHGACVELGLKPWHDPQNFDDAFR 173

Query: 201 RVRVRRFV 208
           RV +R  V
Sbjct: 174 RVAIRNQV 181


>gi|260911822|ref|ZP_05918389.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634033|gb|EEX52156.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 461

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           LVA+SGG+DS+ L   L  +         K  A+  +  LR  E+ +DE+ +  ++C   
Sbjct: 25  LVALSGGADSVALFRILLRL-------DYKVEAVHCNFKLRGEESFRDEI-FCENLCREH 76

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +    V +  ++     +  +  AARE RY    +    +N   I  AH  DD +ET+ 
Sbjct: 77  GVTFHTVHFDTTEYAALHKLSIEMAARELRYNHFEKLRNDLNMDGICVAHHKDDNVETML 136

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GLSG+  T +   N ++ RP L     D+  +L + N  +  D +N  
Sbjct: 137 INLVR-----GTGLSGL--TGMTPQNGYVLRPLLAVSHTDLLEYLQELNQPYVTDSTNLA 189

Query: 197 DRFERVRVR 205
             F R ++R
Sbjct: 190 TDFTRNKIR 198


>gi|78223098|ref|YP_384845.1| tRNA(Ile)-lysidine synthetase-like [Geobacter metallireducens
           GS-15]
 gi|78194353|gb|ABB32120.1| tRNA(Ile)-lysidine synthetase-like protein [Geobacter
           metallireducens GS-15]
          Length = 468

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 16/197 (8%)

Query: 15  SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72
           SL  P   ++VAVSGG+DS+ LL  L S LSD    ++      ++H LR    D + R+
Sbjct: 16  SLFTPGDTVVVAVSGGADSVALLDILIS-LSDL---RLNLVVAHLNHSLRGAESDGDERF 71

Query: 73  VSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V+D+ +   +      + V   + + +  L  A R ARY      A    A  +  AH  
Sbjct: 72  VADLAASRGLPFAGEKADVRALSIRERLSLEDAGRRARYEFFDRVATQYGARSVALAHHA 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET+ +R       +G G++G+          ++ RP L   R +I  +L  R + +
Sbjct: 132 DDQAETLLLRLL-----RGAGVTGLSAMAPRRDGRFV-RPLLTLSRSEIEGYLHGRGLRF 185

Query: 189 CEDPSNTDDRFERVRVR 205
             D SN D  F R R+R
Sbjct: 186 RIDSSNADTAFLRNRIR 202


>gi|257068456|ref|YP_003154711.1| tRNA(Ile)-lysidine synthetase [Brachybacterium faecium DSM 4810]
 gi|256559274|gb|ACU85121.1| tRNA(Ile)-lysidine synthetase [Brachybacterium faecium DSM 4810]
          Length = 364

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 83/193 (43%), Gaps = 19/193 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG+DS+ LL    +V      G ++  A  VDH L++ +            RL 
Sbjct: 39  LLVGLSGGADSLALLAT--AVWVGTRMG-LETEAAIVDHGLQDGSAQVAERALVQAERLG 95

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            A  V+  + +     GL  +AR AR+  +    +   A  ++ AHT DDQ E V M   
Sbjct: 96  AAAHVLPVEVDLAAPGGLENSARAARHDALETLRRERGALALLMAHTLDDQAEQVLMGLA 155

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--------RREDIRSFLLQRNISWCEDP 192
           R    +   LSG+  T        + RPFL          RR D        ++ W EDP
Sbjct: 156 RGGGPR--ALSGIPRT-----RGALLRPFLGTGRDERTALRRADTEEICRLHDLEWWEDP 208

Query: 193 SNTDDRFERVRVR 205
            N D+   R RVR
Sbjct: 209 MNADETLLRSRVR 221


>gi|77407669|ref|ZP_00784424.1| MesJ/Ycf62 family protein [Streptococcus agalactiae COH1]
 gi|77173668|gb|EAO76782.1| MesJ/Ycf62 family protein [Streptococcus agalactiae COH1]
 gi|319746208|gb|EFV98477.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae ATCC 13813]
          Length = 424

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 22/193 (11%)

Query: 17  VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++ AH  +L+AVSGG DS+ LL  L+    + S   I      ++H  R+ ++ E  Y+ 
Sbjct: 14  LFTAHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIR 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQL 132
               ++      +S+       G+ +   AR  RY   S+  +    T ++TAH  DDQ 
Sbjct: 71  Q-WGQIHDVPVFISYFQ-----GIFSEDRARNHRYNFFSKVMREEGYTALVTAHHADDQA 124

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV+MR  R    +   LSG+     +  N  + RPFL  ++E      L  NI   ED 
Sbjct: 125 ETVFMRILR--GSRLRYLSGIKQVSAF-ANGQLIRPFLPYKKE------LLPNIFHFEDA 175

Query: 193 SNTDDRFERVRVR 205
           SN    + R R+R
Sbjct: 176 SNASSDYLRNRIR 188


>gi|298493031|ref|YP_003723208.1| tRNA(Ile)-lysidine synthetase ['Nostoc azollae' 0708]
 gi|298234949|gb|ADI66085.1| tRNA(Ile)-lysidine synthetase ['Nostoc azollae' 0708]
          Length = 324

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 8/185 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ L+     +L  +   K   +    DHC RE ++    +V ++     
Sbjct: 26  LLVAVSGGQDSLCLIK---LLLDLQPKWKWSLAIAHCDHCWREDSQANAHHVENLAHNW- 81

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             H+    + +       A+AR  RY  +++ A+  N   I+T HT  D+ ET+     R
Sbjct: 82  --HTPFYLETATNPVKNEASARNWRYQALTKIAEVHNYQYIVTGHTASDRAETLLYNLMR 139

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GL  +      + N+ + RP L   R     F  + N+   +D +N + ++ R
Sbjct: 140 GTG--ADGLQALTWQRPLNENIILVRPLLEVTRSQTEQFCQEFNLPIWQDSTNQNLQYAR 197

Query: 202 VRVRR 206
            R+R+
Sbjct: 198 NRIRQ 202


>gi|170723226|ref|YP_001750914.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida W619]
 gi|169761229|gb|ACA74545.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida W619]
          Length = 426

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 78/189 (41%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +A SGG DS  LL      L+D  R        AI + H L+  A     + + VC RL 
Sbjct: 15  IAFSGGLDSTVLL----HWLADYARIHATPPLHAIHIHHGLQPAADAWPGHCTAVCERLG 70

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--NATLIMTAHTFDDQLETVYMRS 139
           I  +V+          L  AAR+ARYA      +T+     ++ T    DDQ ET+  R 
Sbjct: 71  IELTVIH-VQVPAGASLEQAARDARYAAF----ETVLGAGDVLFTGQHCDDQAETLLFRL 125

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G  L+ M           + RP L   R  +  +     + W EDPSN D  F
Sbjct: 126 LRGAGLRG--LAAMPQQRPLGRGH-VVRPLLNVSRAQLHEYAQTHGLIWAEDPSNADTAF 182

Query: 200 ERVRVRRFV 208
            R  +R  V
Sbjct: 183 ARNFLRAEV 191


>gi|22536199|ref|NP_687050.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 2603V/R]
 gi|25010088|ref|NP_734483.1| hypothetical protein gbs0013 [Streptococcus agalactiae NEM316]
 gi|76797982|ref|ZP_00780241.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 18RS21]
 gi|77414471|ref|ZP_00790621.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 515]
 gi|61217360|sp|Q8E2H4|TILS_STRA5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217362|sp|Q8E7Y2|TILS_STRA3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|22533016|gb|AAM98922.1|AE014191_14 MesJ/Ycf62 family protein [Streptococcus agalactiae 2603V/R]
 gi|23094439|emb|CAD45658.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586662|gb|EAO63161.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 18RS21]
 gi|77159481|gb|EAO70642.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 515]
          Length = 424

 Score = 59.7 bits (143), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 22/193 (11%)

Query: 17  VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++ AH  +L+AVSGG DS+ LL  L+    + S   I      ++H  R+ ++ E  Y+ 
Sbjct: 14  LFTAHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIR 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQL 132
               ++      +S+       G+ +   AR  RY   S+  +    T ++TAH  DDQ 
Sbjct: 71  Q-WGQIHDVPVFISYFQ-----GIFSEDRARNHRYNFFSKVMREEGYTALVTAHHADDQA 124

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV+MR  R    +   LSG+     +  N  + RPFL  ++E      L  NI   ED 
Sbjct: 125 ETVFMRILR--GSRLRYLSGIKQVSAF-ANGQLIRPFLPYKKE------LLPNIFHFEDA 175

Query: 193 SNTDDRFERVRVR 205
           SN    + R R+R
Sbjct: 176 SNASSDYLRNRIR 188


>gi|76788050|ref|YP_328740.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae A909]
 gi|77405606|ref|ZP_00782695.1| MesJ/Ycf62 family protein [Streptococcus agalactiae H36B]
 gi|76563107|gb|ABA45691.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae A909]
 gi|77175750|gb|EAO78530.1| MesJ/Ycf62 family protein [Streptococcus agalactiae H36B]
          Length = 424

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 22/193 (11%)

Query: 17  VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++ AH  +L+AVSGG DS+ LL  L+    + S   I      ++H  R+ ++ E  Y+ 
Sbjct: 14  LFTAHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIR 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQL 132
               ++      +S+       G+ +   AR  RY   S+  +    T ++TAH  DDQ 
Sbjct: 71  Q-WGQIHDVPVFISYFQ-----GIFSEDRARNHRYNFFSKVMREEGYTALVTAHHADDQA 124

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV+MR  R    +   LSG+     +  N  + RPFL  ++E      L  NI   ED 
Sbjct: 125 ETVFMRILR--GSRLRYLSGIKQVSAF-ANGQLIRPFLPYKKE------LLPNIFHFEDA 175

Query: 193 SNTDDRFERVRVR 205
           SN    + R R+R
Sbjct: 176 SNASSDYLRNRIR 188


>gi|77411309|ref|ZP_00787658.1| MesJ/Ycf62 family protein [Streptococcus agalactiae CJB111]
 gi|77162645|gb|EAO73607.1| MesJ/Ycf62 family protein [Streptococcus agalactiae CJB111]
          Length = 424

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 22/193 (11%)

Query: 17  VYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++ AH  +L+AVSGG DS+ LL  L+    + S   I      ++H  R+ ++ E  Y+ 
Sbjct: 14  LFTAHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIR 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQL 132
               ++      +S+       G+ +   AR  RY   S+  +    T ++TAH  DDQ 
Sbjct: 71  Q-WGQIHDVPVFISYFQ-----GIFSEDRARNHRYNFFSKVMREEGYTALVTAHHADDQA 124

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV+MR  R    +   LSG+     +  N  + RPFL  ++E      L  NI   ED 
Sbjct: 125 ETVFMRILR--GSRLRYLSGIKQVSAF-ANGQLIRPFLPYKKE------LLPNIFHFEDA 175

Query: 193 SNTDDRFERVRVR 205
           SN    + R R+R
Sbjct: 176 SNASSDYLRNRIR 188


>gi|239906277|ref|YP_002953017.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1]
 gi|239796142|dbj|BAH75131.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1]
          Length = 330

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 11/187 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +VA SGG DS+ LL A+ ++L +R  G     A  +DH LR  +  E   V  +C +L +
Sbjct: 19  IVACSGGPDSVALL-AMAAILRER-LGLAGLLAAHLDHGLRPESGTEAEAVGALCRKLGL 76

Query: 83  A----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
                 + V+    + +TG+  A R+AR A  ++     +   ++T H  +D  E   MR
Sbjct: 77  GCLSDRADVAAMARERRTGVEDAGRQARQAFFADCLAGRDNAWVLTGHQLNDLAEDQLMR 136

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G G   +      D    + RP L   R  +  F     +   +DPSN D  
Sbjct: 137 VTR-----GAGWPALGGMAALDPARRLLRPLLLTPRSAVTEFTAALGLPTMDDPSNADPA 191

Query: 199 FERVRVR 205
           + R RVR
Sbjct: 192 YLRNRVR 198


>gi|255008100|ref|ZP_05280226.1| putative cell-cycle protein [Bacteroides fragilis 3_1_12]
 gi|313145817|ref|ZP_07808010.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12]
 gi|313134584|gb|EFR51944.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12]
          Length = 431

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDV 76
           +LVA+SGG+DS+ LL  L S+                 HC      +E+ +DE  +V  +
Sbjct: 22  VLVALSGGADSVALLRLLLSM----------GYTCEATHCNFHLRDKESDRDEA-FVRQL 70

Query: 77  CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C    +    V +      +     +  AARE RY       K   A +I  AH  DD +
Sbjct: 71  CHEAEVPLHTVHFDTIQYAADKHISIEMAARELRYEWFETLRKQRGAAVIAVAHHKDDSV 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +   R     G G++G+      + N  I RP L   R++I ++L + N  +  D 
Sbjct: 131 ETVLLNLIR-----GTGINGLLGIRPKNGN--IVRPLLCLSRDEIITYLQRMNQDYVTDS 183

Query: 193 SNTDDRFERVRVR 205
           +N  D + R ++R
Sbjct: 184 TNLLDDYTRNKIR 196


>gi|260772239|ref|ZP_05881155.1| tRNA(Ile)-lysidine synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260611378|gb|EEX36581.1| tRNA(Ile)-lysidine synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 448

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 11/189 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A+SGG DS    + LH +   R    +   A+ V H L   A   V      C++  
Sbjct: 19  LVLALSGGVDSR---VLLHLLAQYRDQYAVNVRAVHVHHGLSRNADHWVEQCRTWCNQSH 75

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I+  V  V+ +    ++ +   AR+ARY +++++    +  L+   H  DDQLET  +  
Sbjct: 76  ISFDVEYVALERDSGES-IEKLARDARYRVLAQYVNQQDTLLL--GHHADDQLETFLLAL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG+     C +      L   RP L   R+ I  F     +S   D SN D R+
Sbjct: 133 KRGSGPKGLSAMAACASFSQGQLL---RPLLAVTRQQIEQFAQCHQLSSVNDESNADLRY 189

Query: 200 ERVRVRRFV 208
           +R  +R  V
Sbjct: 190 DRNFLRHQV 198


>gi|226954290|ref|ZP_03824754.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ATCC 27244]
 gi|226834961|gb|EEH67344.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ATCC 27244]
          Length = 463

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 13/184 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DSM LL  +  +         +  AI +DH L++ + +    V      L I
Sbjct: 34  LIGCSGGMDSMLLLYLMSEIFPK------QIRAIYIDHQLQQMSAEWGILVQQQSEALNI 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
               +  K S     L   AR ARY    +H       +++ AH   DQ ET+ +R    
Sbjct: 88  P--CIIQKVSVDAGNLEQQARHARYQAYQQHLD--GHEILVLAHHQQDQAETLLLRLFSG 143

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G+      D    D  +W  RPFL   RE I  +  Q    +  DP+N+D  ++R 
Sbjct: 144 AGVNGLAAMQQIDN-RKDFTIW--RPFLDLSREQIEQWSNQLGFEYVIDPTNSDIHYDRA 200

Query: 203 RVRR 206
             R 
Sbjct: 201 WCRE 204


>gi|154508551|ref|ZP_02044193.1| hypothetical protein ACTODO_01052 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798185|gb|EDN80605.1| hypothetical protein ACTODO_01052 [Actinomyces odontolyticus ATCC
           17982]
          Length = 369

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 7/190 (3%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           S+  F+     P  ++V +SGG+DS+ L +    V +      I    ++VDH LR  + 
Sbjct: 27  SLTSFIDEAGAPPALVVGLSGGADSLALALTTIDVAA---RAGIPVVTVTVDHGLRAGSG 83

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +E R V+D    L  A +VV   + +   G   +AR+AR A +   A+   A +++  HT
Sbjct: 84  EEARRVADRAESLG-ARAVVETVSVEGPGGPEGSARDARRAALRAVAQREGAPILL-GHT 141

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R        L  +      D  +   RP L  RR D      Q  ++
Sbjct: 142 MDDQAETVLLRLARGSGPS--SLRAIAPVSRDDDGVTWLRPLLGLRRTDTEQACAQAGLT 199

Query: 188 WCEDPSNTDD 197
             +DP+N  D
Sbjct: 200 PIQDPTNDID 209


>gi|327392817|dbj|BAK10239.1| tRNA(Ile)-lysidine synthase TilS [Pantoea ananatis AJ13355]
          Length = 435

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 7/185 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL  L +    R   +++  A+ V H L   A     +   +C R +
Sbjct: 14  LVVAFSGGLDSTVLLHQLRAWQQARPRSRLR--ALHVHHGLSPNADSWAAHCLCLCERWQ 71

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V+  + +    G+ AAAR+ RY  + + A   +  L +TA   DDQ ET+ +  +R
Sbjct: 72  IPCEVLRVQVTDQGQGIEAAARQVRYQALGQ-ALCADEKL-LTAQHLDDQCETLLLALKR 129

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G                 + RP L   R  +  +     + W ED SN D R++R
Sbjct: 130 G---SGPAGLAAMPAAATFAGHALLRPLLNHSRLSLEQYAKAHQLVWVEDESNQDQRYDR 186

Query: 202 VRVRR 206
             +R+
Sbjct: 187 NFLRQ 191


>gi|288940435|ref|YP_003442675.1| tRNA(Ile)-lysidine synthetase [Allochromatium vinosum DSM 180]
 gi|288895807|gb|ADC61643.1| tRNA(Ile)-lysidine synthetase [Allochromatium vinosum DSM 180]
          Length = 477

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 12/190 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +A SGG DS  +L+A  +V+  R  G+    +  A+ VDH L+  + D  R+ +  C+ L
Sbjct: 25  IAYSGGLDS-SVLLAAAAVIRARLPGEDSSGRLRAVHVDHGLQTASADWARHCAARCAAL 83

Query: 81  RIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           R+  S+     S P  G  L A AREARYA+           L++TA   DDQ ET+ + 
Sbjct: 84  RLPLSIER-PTSTPGPGESLEAWAREARYAIFRR--LLAPGDLLLTAQHRDDQAETLLLA 140

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G+    +   +       + RP L   R+ +  +  ++ + W +DPSN    
Sbjct: 141 LLRGSGPHGLAAMPVVAPLGAGR---LVRPLLDFGRQSLADYACRQGLDWLQDPSNDHTA 197

Query: 199 FERVRVRRFV 208
           F+R  +R  V
Sbjct: 198 FDRNYLRHRV 207


>gi|332363617|gb|EGJ41398.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1059]
          Length = 425

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +L+AVSGG DSM LL  L  + S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IDSQKELD-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  ++ E + +  +  +L +     S+  +  +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESEQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I   ED SN  + + R R+R
Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189


>gi|294649384|ref|ZP_06726815.1| tRNA(Ile)-lysidine synthase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824754|gb|EFF83526.1| tRNA(Ile)-lysidine synthase [Acinetobacter haemolyticus ATCC 19194]
          Length = 463

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 13/184 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DSM LL  +  +         +  AI +DH L++ + +    V      L I
Sbjct: 34  LIGCSGGMDSMLLLYLMSEIFPK------QIRAIYIDHQLQQMSAEWGILVQQQSEALNI 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
               +  K S     L   AR ARY    +H       +++ AH   DQ ET+ +R    
Sbjct: 88  P--CIIQKVSVDAGNLEQQARHARYQAYQQHLD--GHEILVLAHHQQDQAETLLLRLFSG 143

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G+      D    D  +W  RPFL   RE I  +  Q    +  DP+N+D  ++R 
Sbjct: 144 AGVNGLAAMQQIDN-RKDFTIW--RPFLDLSREQIEQWSNQLGFEYVIDPTNSDIHYDRA 200

Query: 203 RVRR 206
             R 
Sbjct: 201 WCRE 204


>gi|329769331|ref|ZP_08260747.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325]
 gi|328839134|gb|EGF88719.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325]
          Length = 439

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 118/265 (44%), Gaps = 28/265 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV----RYVSDVC 77
           I +A+SGG DS   ++  H ++++      +     ++H LRE + +E     ++V D  
Sbjct: 13  IAIALSGGVDS---IVLFHLLVTEYKDSYKELVVFHINHGLREESYEEAGFVEKFVKDFD 69

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +       +S       T     ARE RY   ++ AK    T ++TAH  +DQ+E + M
Sbjct: 70  VKFYKEELNMSDLERDSHTSEEMLARELRYQAFNKMAKLEGVTKLLTAHHKNDQVENILM 129

Query: 138 RSQRDYAEKGMGLS---GMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           R        G  +     +C+ I +  LN++  RP L   + ++  +  ++N+ +  D +
Sbjct: 130 RLLT-----GRSIDHSLAICEEIEMAGLNIY--RPLLNSLKAELEEYAKEKNLHYYVDAT 182

Query: 194 NTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI----PKYLTVH 245
           N D  + R  +R      + DI+    +  +  F +    +NN +   I      Y+   
Sbjct: 183 NFDTDYTRNNIRHNIVPLLNDIN-SGSFDNLINFANYYQNINNNLKKTILSKKDNYIFSR 241

Query: 246 MRSIIAISQD-ILNIDSTLLFYLLR 269
            +  I++ +D  L ++   +++LL+
Sbjct: 242 DKDKISLVKDKFLELNEEEMYFLLK 266


>gi|189502540|ref|YP_001958257.1| hypothetical protein Aasi_1198 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497981|gb|ACE06528.1| hypothetical protein Aasi_1198 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 454

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 25/195 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           +L+AVSGG DS+ +    H         ++ F+    +  LR  E+ +DE  +V  +  +
Sbjct: 30  VLLAVSGGVDSVVMCSLFHE-------ARLHFAIAHCNFGLRGQESEEDEA-FVHTLAQQ 81

Query: 80  LRIA------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++       ++    K +K  T +  AARE RYA   E         + TAH  +D LE
Sbjct: 82  YQVEFFTKRFNTKAYAKTNKLSTQM--AARELRYAWFKELCNIHQIDKLATAHHANDCLE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV          KG  ++G+   +    NL   RP L   +E++  +   + +SW ED S
Sbjct: 140 TVLFN-----LTKGTSIAGLHGILPKQNNL--IRPLLFASKENLLQYAQAKGLSWREDSS 192

Query: 194 NTDDRFERVRVRRFV 208
           N  D + R  +R  V
Sbjct: 193 NKQDDYARNLIRHQV 207


>gi|256544712|ref|ZP_05472084.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399601|gb|EEU13206.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 462

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS  L+  L+ V   + + KI      ++H  R  A ++ + V     +L 
Sbjct: 27  IIVGASGGPDSQFLIYLLNEV---KDYYKINIVLAHLNHLHRLDANEDEKLVEKTGEKLE 83

Query: 82  ----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               I H  +     K +     A R  RY              I  AH  DDQ ETV M
Sbjct: 84  FKTFIDHKSMDDYAKKEKISAENAGRILRYDFFRSIKNKYKNAKIAVAHNKDDQAETVLM 143

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G GL G+   + Y  N  I RP +   + +I  FL +  IS+  D +N + 
Sbjct: 144 RIIR-----GSGLDGLR-AMDYK-NKDIIRPIMDFTKSEILEFLDENKISYHIDYTNLET 196

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 197 DYTRNKIR 204


>gi|146281928|ref|YP_001172081.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri A1501]
 gi|145570133|gb|ABP79239.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri A1501]
          Length = 382

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 6/154 (3%)

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
           AI V H L+    D   +   VC +L +   +V      P   L  AAR+ARY   S  A
Sbjct: 4   AIHVHHGLQAAGDDWPAHCQRVCDQLGVTLEIVR-VRVVPGASLERAARDARYQAFS--A 60

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                 L++T    DDQ ET+  R  R    +G  L  M D         + RP L   R
Sbjct: 61  CVGEGELLLTGQHRDDQAETLLFRLLRGAGVRG--LVAMPDARSMGRGS-LVRPLLEVSR 117

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            D+  +     ++W EDPSN    + R  +RR V
Sbjct: 118 ADLEDYARANGLAWVEDPSNQQLEYSRNFLRREV 151


>gi|182682123|ref|YP_001830283.1| tRNA(Ile)-lysidine synthetase [Xylella fastidiosa M23]
 gi|182632233|gb|ACB93009.1| tRNA(Ile)-lysidine synthetase [Xylella fastidiosa M23]
 gi|307578388|gb|ADN62357.1| cell cycle protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 435

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           +LVA SGG DS  LL  L S  + R  G     AI + H L E A     + +  C+   
Sbjct: 15  VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTAHCAAFCTQHD 71

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            RL IA   VS  + +        AR A +A   +H        +  AH  DDQ ET  +
Sbjct: 72  IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 126

Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R+ R   +   GL+ M   T     +LW  RP L   R  +  +  Q+++ W ED SN D
Sbjct: 127 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHSRAQLLDYAQQQHLDWIEDSSNAD 181

Query: 197 DRFERVRVRRFV 208
            R +R  +R  V
Sbjct: 182 LRHDRNFLRIHV 193


>gi|21672395|ref|NP_660462.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090671|sp|Q8KA23|TILS_BUCAP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21623002|gb|AAM67673.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 445

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 14/186 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  LL  +  +       +IK  AI ++H L  ++K    +   +C + +I
Sbjct: 15  LIAYSGGIDSTVLLYKMLKIKEKNP--QIKIRAIHINHNLHPSSKKWEEHCIKICHKYKI 72

Query: 83  AHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
               +  K  K   +  +    R  RY  I  +   +N  +++T H  +DQ ET+++  +
Sbjct: 73  P---IITKEIKILLKKNIEETLRIKRYNTIYNYL--LNDEILLTGHHLNDQCETLFLSLK 127

Query: 141 RDYAEKGMGLSGMC-DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R       GLSGM  +  L      I RPFL   +++++ +  + N+   ED SN +  +
Sbjct: 128 R--GSGPTGLSGMSIENFLGKKR--IVRPFLTKTKKELQKWACENNLESIEDFSNFNIDY 183

Query: 200 ERVRVR 205
           +R  +R
Sbjct: 184 DRNFIR 189


>gi|325920753|ref|ZP_08182659.1| tRNA(Ile)-lysidine synthetase [Xanthomonas gardneri ATCC 19865]
 gi|325548805|gb|EGD19753.1| tRNA(Ile)-lysidine synthetase [Xanthomonas gardneri ATCC 19865]
          Length = 431

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 136/356 (38%), Gaps = 47/356 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  ILVA SGG DS  LL  L +    R+ G     A+ V H L   A     +    C 
Sbjct: 11  PGPILVAYSGGMDSGVLLQLLAAAPRYRNIG---LRAVHVHHGLHADADAWAAHCQRQCD 67

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L+I   +   K ++  +GL   A        +          +  AH  DDQ ET  +R
Sbjct: 68  ALQIPLQIARVKVAR-DSGLGLEAAARHARHAAFAETLTPGEWLTLAHHRDDQAETFLLR 126

Query: 139 SQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           + R  A    GL+ M          LW  RP L   R D+ ++     + W EDPSN D 
Sbjct: 127 ALR--ASGPDGLAAMRAQRPFAGGMLW--RPLLHHARTDLLAYAQAHGLEWIEDPSNADI 182

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R++R  +R  +           M   Q    +   A+A       + H+ +    S  +L
Sbjct: 183 RYDRNFLRTQL-----------MPLLQQRWPQAAEALAR------SAHLSA--DASALLL 223

Query: 258 NIDSTLLFYLLRVSAAICGGQI-SLPGYRSMERVMLFLKSGK------RGCVSIGRVV-- 308
             D+ LL  +L  + A+   ++ + P  R    +  ++ +         G  ++ + +  
Sbjct: 224 QEDTALLPTMLTATGALDLQRLRAQPATRRPRLLRAWVSAAHAPPLPAHGITALEQEIDN 283

Query: 309 --IDRRANFLWITRAVRNL--------PTLILYPEETTVWDGRYQFQNLSDSLIQI 354
              DR+A F W    VR          P     P+  T WDG+   Q    + +Q+
Sbjct: 284 HAPDRQARFAWQQVEVRRWRQCLYLLRPHAEWPPQWQTHWDGQAALQLPDGAQLQL 339


>gi|237786216|ref|YP_002906921.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759128|gb|ACR18378.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385]
          Length = 381

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 21/190 (11%)

Query: 23  LVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++  SGG+DS+ L+  A+            +  A+ +DH L+  +       ++VC  L 
Sbjct: 62  IIGCSGGADSLSLVGCAIKQ--------GWRVHAVVIDHGLQAGSAGVATRAANVCQALG 113

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            +  VV      P+     AARE RY  + + A+      ++ AHT DDQ E++ +   R
Sbjct: 114 ASSQVV---KVSPREATETAAREERYRALGQVAQERGGLPVLVAHTGDDQAESLLLGLAR 170

Query: 142 DYAEKGMG-LSGMCDTILYDL-----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                G+G ++GM   + +          + RP L  RR++      +  I+   DP+NT
Sbjct: 171 G---AGLGSIAGMPPVLFHHPVVDAGATALGRPLLSIRRDNTIGACAELGITPWHDPTNT 227

Query: 196 DDRFERVRVR 205
                R RVR
Sbjct: 228 SGDNLRSRVR 237


>gi|306836931|ref|ZP_07469883.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium accolens ATCC 49726]
 gi|304567186|gb|EFM42799.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium accolens ATCC 49726]
          Length = 345

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 94/232 (40%), Gaps = 49/232 (21%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCL- 62
           + R  VR+      + V +SGG+DS+ L  A+    H V+           A+ VDH L 
Sbjct: 20  ACRRAVRAAQLDHTVGVGLSGGADSLALCAAMIAEGHDVI-----------ALCVDHGLQ 68

Query: 63  ---RETAKDEVRYVSDVCSRLRI---------AHSVVSWKNSKPQTGLMAAAREARYALI 110
              RE A+   R    + +R R+          +S+ +         + AAA E R    
Sbjct: 69  DGSREQAERAARQAESLGARARVLEVQVPEEAGNSLEAAARQARYQAMSAAACEGRENAA 128

Query: 111 SEHAKTIN--------------ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           S  A+                 A  I  AHT DDQ ET+ + + R        ++GM + 
Sbjct: 129 SCRAEICERDAEPGKAARRGERALEIAVAHTADDQAETLLLGALRGR------VAGMPER 182

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            + +    + RPFL+ RR D      +  +   +DP N D  F RV +RR +
Sbjct: 183 AVVE-GARVVRPFLQVRRADTEGACAELGLEVWQDPQNADTDFRRVALRREI 233


>gi|28199394|ref|NP_779708.1| cell cycle protein [Xylella fastidiosa Temecula1]
 gi|61217346|sp|Q87BE2|TILS_XYLFT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28057500|gb|AAO29357.1| cell cycle protein [Xylella fastidiosa Temecula1]
          Length = 437

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           +LVA SGG DS  LL  L S  + R  G     AI + H L E A     + +  C+   
Sbjct: 17  VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTAHCAAFCTQHD 73

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            RL IA   VS  + +        AR A +A   +H        +  AH  DDQ ET  +
Sbjct: 74  IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 128

Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R+ R   +   GL+ M   T     +LW  RP L   R  +  +  Q+++ W ED SN D
Sbjct: 129 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHSRAQLLDYAQQQHLDWIEDSSNAD 183

Query: 197 DRFERVRVRRFV 208
            R +R  +R  V
Sbjct: 184 LRHDRNFLRIHV 195


>gi|71898703|ref|ZP_00680872.1| PP-loop [Xylella fastidiosa Ann-1]
 gi|71731468|gb|EAO33530.1| PP-loop [Xylella fastidiosa Ann-1]
          Length = 435

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           +LVA SGG DS  LL  L S  + R  G     AI + H L E A     + +  C+   
Sbjct: 15  VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTAHCAAFCTQHD 71

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            RL IA   VS  + +        AR A +A   +H        +  AH  DDQ ET  +
Sbjct: 72  IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 126

Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R+ R   +   GL+ M   T     +LW  RP L   R  +  +  Q+++ W ED SN D
Sbjct: 127 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHSRAQLLDYAQQQHLDWIEDSSNAD 181

Query: 197 DRFERVRVRRFV 208
            R +R  +R  V
Sbjct: 182 LRHDRNFLRIHV 193


>gi|194366664|ref|YP_002029274.1| tRNA(Ile)-lysidine synthetase [Stenotrophomonas maltophilia R551-3]
 gi|194349468|gb|ACF52591.1| tRNA(Ile)-lysidine synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 476

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +LV  SGG DS    + LH +            A+ + H L+  A + V +    C  
Sbjct: 60  APVLVGYSGGVDST---VLLHWLWRCAQASGTPLRAVHIHHGLQAAADEWVLHCQQQCIA 116

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L I  +V      +  TGL       +    +  A+      +  A   DDQ ET  +R+
Sbjct: 117 LGIELAVHR-VQVESDTGLGPEGAARQARRAAFAAELREGETLALAQHQDDQAETFLLRA 175

Query: 140 QRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R     G G+ G+     D++L    LW  RP L+  R  +     Q  + W EDPSN 
Sbjct: 176 LR-----GSGIDGLAAMSADSLLDGHRLW--RPLLQVPRSTLLDHARQHALRWIEDPSNG 228

Query: 196 DDRFER 201
           DD  +R
Sbjct: 229 DDHADR 234


>gi|171778208|ref|ZP_02919437.1| hypothetical protein STRINF_00276 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283032|gb|EDT48456.1| hypothetical protein STRINF_00276 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 421

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  L+  +  +  G +  +   V+H  R  +  E  Y+ +     +
Sbjct: 21  VLIAVSGGVDSMNLLHFLY--IYRKKLG-VDIAIAHVNHKQRLESDTEEAYLREWAKEHQ 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V  +  +  +T    AAR+ RY    E     + T ++TAH  DDQ ET++MR  R
Sbjct: 78  IPIYVAYFSGAFSET----AARDFRYKFFKELMAEHSYTALVTAHHADDQAETIFMRLLR 133

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM     +     I RPFL   ++++       +I   ED +N    F R
Sbjct: 134 --GSRLRHLSGMQTVNAFGDGELI-RPFLAYSKKEL------PDIFHFEDDTNRSLDFLR 184

Query: 202 VRVR 205
            R+R
Sbjct: 185 NRIR 188


>gi|332526282|ref|ZP_08402411.1| putative cell cycle protein [Rubrivivax benzoatilyticus JA2]
 gi|332110116|gb|EGJ10744.1| putative cell cycle protein [Rubrivivax benzoatilyticus JA2]
          Length = 429

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 95/196 (48%), Gaps = 12/196 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA + VA SGG DS  LL A  +  + R  G ++  A+ V H L  +A   +  +   C+
Sbjct: 2   PAAVAVAASGGRDSTALLHA--TARAARELG-LEVHALHVHHGLVASADIWLAQLRAQCA 58

Query: 79  RLRIA----HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           R   +    H   +     P  G  + A AR  RYA ++  A+     L++ A    DQ 
Sbjct: 59  RWARSGLPLHFHATRLAGAPARGESVEAWARRERYAALAAMAQAAGCDLVLLAQHRRDQA 118

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +++ R    +   L+ M      D  +W +RP+L   RE+I ++L +  + W +D 
Sbjct: 119 ETLLLQALRGGGAEA--LAAMPRRAERDGLVW-ARPWLDRPREEIEAYLRRHRLRWLDDE 175

Query: 193 SNTDDRFERVRVRRFV 208
           SN D+ F R R+RR V
Sbjct: 176 SNDDEAFARNRLRRQV 191


>gi|262281632|ref|ZP_06059401.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262262086|gb|EEY80783.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 425

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 24/206 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL   +   +F+        +L+A+SGG DSM LL  L+    +     I+     ++H 
Sbjct: 6   FLKQCKEKAYFIEH----QRVLLAISGGLDSMTLLNLLYKYQKELD---IELILAHINHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINA 119
            R  A  E + + ++  +L +     S+      +G+ +  +AR+ RY    +  +  + 
Sbjct: 59  QRIEADQEEKQLKEIAQKLGVKILTSSF------SGVFSEKSARDFRYNFFKKVMQEEDC 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T ++TAH  DDQ ET++MR  R    +   LSGM D   +     I RP L   + D  +
Sbjct: 113 TALVTAHHADDQAETIFMRILR--GSRLRYLSGMKDRQPFGGGELI-RPLLEFSKTDFPT 169

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
                 +   ED SN ++ + R RVR
Sbjct: 170 ------VFHFEDASNFENTYFRNRVR 189


>gi|255066803|ref|ZP_05318658.1| tRNA(Ile)-lysidine synthase [Neisseria sicca ATCC 29256]
 gi|255048878|gb|EET44342.1| tRNA(Ile)-lysidine synthase [Neisseria sicca ATCC 29256]
          Length = 399

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 6/155 (3%)

Query: 51  IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110
           +   A+ V H L   A D + + + +C    +    V  +  K   G+ AAAR+ARY   
Sbjct: 11  LNVHALHVHHGLSRNADDWLGFCTRLCQEWNVPFRSVKVEVKKDGLGIEAAARKARYQAF 70

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           S+    I    I  AH  DDQ+ET  + + R    K +        +  +  +W  RP L
Sbjct: 71  SDDPSGI----IALAHHQDDQIETFMLAAVRGGGIKALAAMPQWRKLDEETQIW--RPLL 124

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
              R+++ S+    N+   ED SN D  F R  +R
Sbjct: 125 TFSRKELESYAAACNLPNIEDESNADTAFLRNWMR 159


>gi|322375226|ref|ZP_08049740.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C300]
 gi|321280726|gb|EFX57765.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C300]
          Length = 425

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 24/199 (12%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66
           F+R   +  H  +++A+SGG DSM L   L +    +  G I+     V+H  R  +   
Sbjct: 10  FLRKEYFKKHSKVVLALSGGLDSMFLFQLLSTY--QKELG-IELIVAHVNHKQRSESDWE 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           ++E+R ++D  + L I  +  S   S+      A ARE RY    +  K + AT ++TAH
Sbjct: 67  ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKEVGATALVTAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ MR  R    +   L+G+ ++ + D ++ I RP L   ++D         I
Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKESQVVD-DIEIIRPLLPFHKKDFPP------I 170

Query: 187 SWCEDPSNTDDRFERVRVR 205
              ED +N ++ + R R+R
Sbjct: 171 FHFEDQTNQENTYFRNRIR 189


>gi|220909149|ref|YP_002484460.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7425]
 gi|219865760|gb|ACL46099.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7425]
          Length = 336

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 21/200 (10%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L  P   +LVAVSGG DS+ L+     +L  R     + +    DH  R  +     +
Sbjct: 27  RHLFTPGQRLLVAVSGGQDSLCLIK---LLLDLRPHWHWELAIGHCDHRWRSDSAANAAH 83

Query: 73  VSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           V  +  +      L+IA  +       P+T   A +R  RY +++E A+T N T ++T H
Sbjct: 84  VQTLAEQWQLPFWLQIAAEI-------PRT--EAQSRTWRYEVLTEIAQTQNYTAVVTGH 134

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T  D+ ET+     R     G+       ++  D+ L   RP L   R     F  ++N+
Sbjct: 135 TASDRAETLLFNLLRGSGTDGLQALVWQRSLATDIQL--VRPLLGLTRTQTGDFCREQNL 192

Query: 187 SWCEDPSNTDDRFERVRVRR 206
              ED +N D ++ R R+R+
Sbjct: 193 PIWEDSTNQDYQYRRNRIRQ 212


>gi|332364175|gb|EGJ41952.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK49]
          Length = 425

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLIDYQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +  +     AAR+ RY       +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFGNVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQYFACGELI-RPLLTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I   ED SN  + + R R+R
Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189


>gi|330959215|gb|EGH59475.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 445

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 10/179 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +  SGG DS  +L+ L + LS R       +A+ V H L+  A     +   VC  L +A
Sbjct: 30  IGFSGGLDST-VLLHLLADLSRRET-LPALNAVHVHHGLQAAADAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     +P   +  AAR+ARYA  ++  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FERVR-VQVEPGASIEQAARQARYAAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
             +G  L+GM    IL   +L   RP L   R ++  + LQR ++W EDPSN D +F R
Sbjct: 145 GVRG--LAGMPVQRILGRGHL--VRPLLAVSRTELEDYALQRGLTWVEDPSNDDQQFSR 199


>gi|302553169|ref|ZP_07305511.1| hypoxanthine phosphoribosyltransferase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470787|gb|EFL33880.1| hypoxanthine phosphoribosyltransferase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 358

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 21/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G I+   ++VDH L+  A  +VR  ++V  RLR
Sbjct: 59  VLVACSGGADSMALASAL--AFEAPRLG-IRAGGVTVDHGLQ--AGSDVR-AAEVVLRLR 112

Query: 82  I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                   + +V   ++  P+     AAR+ARYA +   A+   AT ++  HT DDQ ET
Sbjct: 113 ELGLDPVDSVTVTVGRSGGPEA----AARDARYAALDTAAERHGATAVLLGHTRDDQAET 168

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   LSGM      D      RPFL   R+  R   + +++   +DP N
Sbjct: 169 VLLGLARGSGIR--SLSGMAAVSGADGR--YRRPFLELDRQTARKACMVQSLPVWDDPHN 224

Query: 195 TDDRFERVRVR 205
            D  + R R+R
Sbjct: 225 ADPAYTRSRLR 235


>gi|15902054|ref|NP_357604.1| hypothetical protein spr0010 [Streptococcus pneumoniae R6]
 gi|116516781|ref|YP_815434.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae D39]
 gi|61217356|sp|Q8DRP9|TILS_STRR6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|122279568|sp|Q04N53|TILS_STRP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15457538|gb|AAK98814.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077357|gb|ABJ55077.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae D39]
          Length = 425

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET++MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETIFMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|121605781|ref|YP_983110.1| tRNA(Ile)-lysidine synthetase [Polaromonas naphthalenivorans CJ2]
 gi|254789039|sp|A1VRB1|TILS_POLNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|120594750|gb|ABM38189.1| tRNA(Ile)-lysidine synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 328

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 16/186 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG+DS  LL+A     ++R  G+++  A  + H L+  A D VR    VC++  + 
Sbjct: 32  VAYSGGADSTALLLAA----AERWPGQVQ--AFHIHHGLQAAADDFVRVCESVCAKAGLP 85

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL--IMTAHTFDDQLETVYMRSQR 141
             +V   +++  +G        R    +         +  ++     DDQ+ET+ +   R
Sbjct: 86  LHIVQ-VDARHASGESPEDAARRARYAALATAATARGMQGVLLGQHADDQVETMLLALSR 144

Query: 142 DYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G GL G+           +   RP L      +R +L+++ I + +DP+NTD+R+
Sbjct: 145 -----GAGLPGLSAMPASFGRGGMVFYRPLLHIPSAVLREWLVEQPIEFVDDPTNTDERY 199

Query: 200 ERVRVR 205
            R R+R
Sbjct: 200 TRNRIR 205


>gi|330997932|ref|ZP_08321766.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT
           11841]
 gi|329569536|gb|EGG51306.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT
           11841]
          Length = 450

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 21/190 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCS- 78
           ILVA+SGG+DS+ LL+ L               A+  +  LR  E+ +DE ++V D+C  
Sbjct: 27  ILVALSGGADSVALLLVLQQ-------AGFHCEAVHCNFHLRGEESDRDE-KFVRDLCRS 78

Query: 79  ---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              RL       +    +    +  AARE RY    E         I  AH  DD +ET+
Sbjct: 79  RSIRLHTKDFDTAAYARQKGISIEMAARELRYGYFEELRADWRFDKIAVAHHRDDNVETL 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +     +  +G GL G+  T +   N ++ RP L   R++I  +L  +   +  D +N 
Sbjct: 139 LL-----HLVRGTGLKGL--TGMRYHNGYVIRPMLDTNRKEIERYLAGKGQPYVTDSTNL 191

Query: 196 DDRFERVRVR 205
           +    R ++R
Sbjct: 192 ETEAVRNKIR 201


>gi|322373967|ref|ZP_08048501.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C150]
 gi|321276933|gb|EFX54004.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C150]
          Length = 421

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 83/186 (44%), Gaps = 20/186 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVAVSGG+DSM LL  L++   D     I+     ++H  R+ ++ E  Y+       +
Sbjct: 21  ILVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHINHKQRQESEHEETYLRHWAKEHQ 77

Query: 82  IA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I+  +S  S K S+        AR  RY       K    T ++TAH  DDQ ET++MR 
Sbjct: 78  ISFHYSAFSGKFSEND------ARTFRYEFFRRVMKDYGYTALVTAHHADDQAETIFMRL 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   L+G+     +     I RPFL   +  +            ED SNT   +
Sbjct: 132 LR--GSRLRHLTGISAVRPFGTG-QIIRPFLHLTKAQLPETF------HFEDKSNTSLAY 182

Query: 200 ERVRVR 205
            R R+R
Sbjct: 183 LRNRIR 188


>gi|317120982|ref|YP_004100985.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter marianensis DSM
           12885]
 gi|315590962|gb|ADU50258.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter marianensis DSM
           12885]
          Length = 668

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 93/202 (46%), Gaps = 14/202 (6%)

Query: 8   SVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            V  F R   L+ P H +LVAVSGG DS  LL  LH  L +R  G        VDH LR 
Sbjct: 10  EVEAFARQHRLLRPGHRVLVAVSGGRDSTVLLDLLHR-LQER-LGLAALGVAHVDHGLRP 67

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            + D+ R+V++  +   +   +      + +  L  AAR ARY  + E A    A  +  
Sbjct: 68  GSADDARWVAEQAAARGLPFLLRRVCVERGRRSLEDAARAARYRALREMAGEFGAHRVAL 127

Query: 125 AHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           AH   DQ ETV MR     A  G+ GL+GM             RP L      + ++   
Sbjct: 128 AHHAGDQAETVLMRL---VAGAGVRGLAGM-----RPRRGPFVRPLLAVTPARLAAYAAA 179

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
           R ++W +DP+N D R  R RVR
Sbjct: 180 RGLTWRDDPTNRDLRILRNRVR 201


>gi|306834613|ref|ZP_07467725.1| tRNA(Ile)-lysidine synthetase [Streptococcus bovis ATCC 700338]
 gi|304423249|gb|EFM26403.1| tRNA(Ile)-lysidine synthetase [Streptococcus bovis ATCC 700338]
          Length = 421

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 20/186 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL   H +   R   +I+     ++H  R+ ++ E  Y+ +   + +
Sbjct: 21  VLIAVSGGVDSMNLL---HFLYIYRDKLEIEIGIAHINHKQRQESEMEEAYLCEWAEKHQ 77

Query: 82  IAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I   V  +      +G+ +  AAR+ RY    +     N T ++TAH  DDQ ET++MR 
Sbjct: 78  IPIYVDYF------SGIFSEKAARDFRYQFFKKIMVEKNYTAVVTAHHADDQAETIFMRF 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSGM     +     I RPFL   ++++        I   ED SN    +
Sbjct: 132 LR--GSRLRHLSGMQGVSSFCTGELI-RPFLTISKKNLPE------IFHFEDDSNQSLDY 182

Query: 200 ERVRVR 205
            R R+R
Sbjct: 183 LRNRIR 188


>gi|302559297|ref|ZP_07311639.1| tRNA(Ile)-lysidine synthase [Streptomyces griseoflavus Tu4000]
 gi|302476915|gb|EFL40008.1| tRNA(Ile)-lysidine synthase [Streptomyces griseoflavus Tu4000]
          Length = 341

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 85/193 (44%), Gaps = 25/193 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G ++   ++VDH L+  A  ++R    V   LR
Sbjct: 42  VLVACSGGADSMALASAL--AFEAPRLG-VRAGGVTVDHGLQ--AGSDLRAAEVV---LR 93

Query: 82  IAH---------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +           +V   ++  P+     A   A  A+   H     A  ++  HT DDQ 
Sbjct: 94  LTELGLEPVESVAVTVGRDGGPEAAARDARYAALDAVAERH----GACAVLLGHTRDDQA 149

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +   R    +   LSGM      D      RPFL+  R+  R   + +++   +DP
Sbjct: 150 ETVLLGLARGSGIR--SLSGMAAVSGADGRY--RRPFLQVDRQTARKACMAQSLPVWDDP 205

Query: 193 SNTDDRFERVRVR 205
            NTD  + R R+R
Sbjct: 206 HNTDPAYTRSRLR 218


>gi|15837261|ref|NP_297949.1| cell cycle protein [Xylella fastidiosa 9a5c]
 gi|61217426|sp|Q9PFJ8|TILS_XYLFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|9105537|gb|AAF83469.1|AE003910_5 cell cycle protein [Xylella fastidiosa 9a5c]
          Length = 437

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           +LVA SGG DS  LL  L S  + R  G     AI + H L E A     + +  C+   
Sbjct: 17  VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLHEHADAWTAHCAAFCTQHY 73

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            RL IA   VS  + +        AR A +A   +H        +  AH  DDQ ET  +
Sbjct: 74  IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 128

Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R+ R   +   GL+ M   T     +LW  RP L   R  +  +  Q+++ W ED SN D
Sbjct: 129 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHSRAQLLDYAQQQHLDWIEDSSNAD 183

Query: 197 DRFERVRVRRFV 208
            R +R  +R  V
Sbjct: 184 LRHDRNFLRIHV 195


>gi|325689365|gb|EGD31371.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK115]
          Length = 425

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L  + S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +  +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFEKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP     + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLFTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I   ED SN  + + R R+R
Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189


>gi|322412927|gb|EFY03834.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 428

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  LH    +    +I      ++H  R  ++ E  Y+    +   
Sbjct: 23  VLIAVSGGVDSMNLLHFLHLFQENL---QISIGIAHINHKQRIESEIEEDYLRQWANN-- 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             HSV  + +    T    AAR+ RY    +  +    + ++TAH  DDQ ET+ MR  R
Sbjct: 78  --HSVPIYISHFEGTFSEKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETILMRLIR 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSG+     +  N  + RPFL   ++D+       NI   ED SN +    R
Sbjct: 136 --GSRLRHLSGIKPVQPFG-NGQLIRPFLPFSKDDL------PNIFHFEDTSNEETTVFR 186

Query: 202 VRVR 205
            RVR
Sbjct: 187 NRVR 190


>gi|262038802|ref|ZP_06012153.1| tRNA(Ile)-lysidine synthase [Leptotrichia goodfellowii F0264]
 gi|261747177|gb|EEY34665.1| tRNA(Ile)-lysidine synthase [Leptotrichia goodfellowii F0264]
          Length = 307

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 114/263 (43%), Gaps = 38/263 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77
           IL+A SGG DS    + L+ +LS   F + K+S     + V+H LR   + ++ +V    
Sbjct: 26  ILLAFSGGPDS----VFLYRILS---FFQEKYSLELALMYVNHNLRHDVEKDLEFVKRFS 78

Query: 78  S----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                +L      V+  +SK +     AARE RY+ ++E A  +    I T H  DD +E
Sbjct: 79  EENGVQLYTESVNVNDYSSKNRKSTELAARELRYSALTEKADDVGYDKIATGHNLDDNVE 138

Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T   R  R  + KG+ G+    + I+        RP L   +++I   L   N  + +D 
Sbjct: 139 TFIFRLLRGTSIKGLKGIPEKRENII--------RPILSFEKKEILDCLKANNEEYIKDY 190

Query: 193 SNTDDRFERVRVR------------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +N  + + R  +R             F R ID   L  ++K  ++   K  + V  L   
Sbjct: 191 TNEQNDYTRNYIRNDIFPMFLRINPNFRRKID--ELISEIKNKENGENKKADFVKYLEEN 248

Query: 241 YLTVHMRSIIAISQDILNIDSTL 263
            + ++ R I  I  +I + +  +
Sbjct: 249 DIEINRRKINRIYSNIFDEEGNI 271


>gi|256819419|ref|YP_003140698.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581002|gb|ACU92137.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 431

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 31/193 (16%)

Query: 25  AVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEV---RYVS 74
           A+SGG DS+ L  L+  H +             + + HC      RE+  DE     + +
Sbjct: 16  AISGGIDSVVLTHLLYTHGI------------ELLLAHCNFQLRGRESDDDEAFVRTFAA 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++   L +         S  Q     AARE RY    E A T     I TAH  +D LET
Sbjct: 64  ELSVPLEVKRFDTHQYASSHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNLET 123

Query: 135 VYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++   R    +G +G+    DTI+        RP L+  R+ I  +   + + W ED S
Sbjct: 124 FFINLSRGSGLEGLLGIPEEKDTII--------RPLLQFSRQQIYEYAQAKRLKWREDSS 175

Query: 194 NTDDRFERVRVRR 206
           N  +++ R  +R 
Sbjct: 176 NETNKYVRNVIRH 188


>gi|315452584|ref|YP_004072854.1| tRNA(Ile)-lysidine synthase, TilS [Helicobacter felis ATCC 49179]
 gi|315131636|emb|CBY82264.1| tRNA(Ile)-lysidine synthase, TilS [Helicobacter felis ATCC 49179]
          Length = 342

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 22/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS---- 78
           L+  SGG DS    +AL  +L +     + F     DH LRE  + E+ +   +      
Sbjct: 17  LLGFSGGGDS----VALFHLLLEHG---LNFDLAIFDHGLREQTRAEIAHAKTLGKLYQK 69

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           R+ +  + +S  N      L A  R+ARY        T N T ++ AH  +D+LE + M+
Sbjct: 70  RVHVGGAKLSGAN------LEAKCRKARYEFFENMMDTFNYTHLILAHHLNDKLEWLLMQ 123

Query: 139 SQRDYA-EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             +  + +  +G S       Y L     RP +   +  +  +L +  + + ED +N+D 
Sbjct: 124 LGKGASLQTLLGFSASEKRKNYHL----IRPLIYTPKSALLDYLHRHKLRYFEDSTNSDL 179

Query: 198 RFERVRVRR 206
            F+R  +R 
Sbjct: 180 HFKRNLIRH 188


>gi|313894865|ref|ZP_07828425.1| tRNA(Ile)-lysidine synthetase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976546|gb|EFR42001.1| tRNA(Ile)-lysidine synthetase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 425

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 80/190 (42%), Gaps = 15/190 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSR 79
           HILVA SGG DS+ LL  L      R  G    +   V+H +R  A + + R+V D C+ 
Sbjct: 25  HILVACSGGVDSLALLDVLDRF---RRAGGAHITCAHVEHGIRGAASRADARFVKDYCAV 81

Query: 80  LRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I  +  +          +  L  +AR  RY  +    +      I TAH  DD  ETV
Sbjct: 82  QGIPFTCAAVDAPAYARAHRMSLETSARILRYEFLYRAREECGCDCIATAHHADDLAETV 141

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G G  G+     +D  L   RP L   R +I S+   R ++   D +N 
Sbjct: 142 LMRILR-----GTGTVGLAAMREWDGVLL--RPLLTATRAEIVSYARARALAPRSDETNE 194

Query: 196 DDRFERVRVR 205
                R R+R
Sbjct: 195 MCDAMRNRIR 204


>gi|157150417|ref|YP_001451360.1| tRNA(Ile)-lysidine synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189035973|sp|A8B000|TILS_STRGC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157075211|gb|ABV09894.1| tRNA(Ile)-lysidine synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 425

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 24/206 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL   +   +F+        +L+A+SGG DSM LL  L+    +     I+     ++H 
Sbjct: 6   FLKQCKEKAYFIEH----QRVLLAISGGLDSMTLLNLLYKYQKELD---IELILAHINHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINA 119
            R  A  E + + ++  +L +     S+      +G+ +  +AR+ RY    +  +  + 
Sbjct: 59  QRIEADQEEKQLKEIAQKLGVKILTSSF------SGVFSEKSARDFRYNFFKKVMQEEDC 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T ++TAH  DDQ ET++MR  R    +   LSGM D   +     I RP L   + D  +
Sbjct: 113 TALVTAHHADDQAETIFMRILR--GSRLRYLSGMKDRQPFGGGELI-RPLLEFSKTDFPT 169

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
                 +   ED SN ++ + R RVR
Sbjct: 170 ------VFHFEDASNFENTYFRNRVR 189


>gi|15899960|ref|NP_344564.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae TIGR4]
 gi|111658620|ref|ZP_01409270.1| hypothetical protein SpneT_02000210 [Streptococcus pneumoniae
           TIGR4]
 gi|61217410|sp|Q97TC5|TILS_STRPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|14971475|gb|AAK74204.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae TIGR4]
 gi|301793336|emb|CBW35695.1| putative ATP-binding PP-loop family protein [Streptococcus
           pneumoniae INV104]
          Length = 425

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET++MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETIFMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|330817518|ref|YP_004361223.1| tRNA-Ile-lysidine synthetase [Burkholderia gladioli BSR3]
 gi|327369911|gb|AEA61267.1| tRNA-Ile-lysidine synthetase [Burkholderia gladioli BSR3]
          Length = 477

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 97/225 (43%), Gaps = 19/225 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++VR  +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVRVALGELPEHATIAIAYSGGLDSSVLLEA-----AARVAGAERCVALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   + +     + L +   V   +  +    G+ A+ARE RY  +    +   A  +  
Sbjct: 69  ADAWLAHAEAAAAALGVRFDVERVEVPRGTGLGVEASAREVRYRALDAMGERHGAQALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSF 180
           A   DDQ ETV ++  R     G GL+G+       +  + ++   RP L   R  +  +
Sbjct: 129 AQHADDQAETVLLQLLR-----GAGLAGIAAMAPRYLPAEASMVRVRPLLHLLRAQLERY 183

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
              R + W +D SN D R+ R  +R  V    L AL +    F+D
Sbjct: 184 AEARRLRWIDDESNADTRYTRNALRIEV----LPALSVHFPGFRD 224


>gi|307609584|emb|CBW99086.1| hypothetical protein LPW_08711 [Legionella pneumophila 130b]
          Length = 400

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 123/293 (41%), Gaps = 28/293 (9%)

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
           A+ ++H +   + +  R+   +C  L IA    + +  +    +  AAR ARY   S   
Sbjct: 18  AVHINHGISGNSLNWQRHCEQLCLDLGIAFIAKAIEFDR-SANVEEAARNARYDFFSSLL 76

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  N  L++  H  DDQ ETV ++  R     G+     C  +       ++RPFL C R
Sbjct: 77  ED-NDCLVL-GHHLDDQAETVLLQLFRGAGVDGLAAMQECSNLGAGQ---LARPFLTCPR 131

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            ++  +     + W ED SN D ++ R  +R  V       + L ++K+  +   ++ A 
Sbjct: 132 VELEHYARIHELKWIEDESNQDTKYSRNYLRHRV-------MPLLLEKWPGVAGNISRAA 184

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR----------VSAAICGGQISLPGY 284
                    + + +I     D+LN    LL   ++          +   +   +I LP  
Sbjct: 185 THCQQAKANLEVLAIKDCP-DLLNATDHLLIEPIKGLEFERITNVLKFWLKKNRIQLPSS 243

Query: 285 RSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPE 333
           ++  R+   ++F K      VS  ++ + R    L++ +A + NLP  I + +
Sbjct: 244 KTFHRIIHEIIFAKLDAMPTVSWDQIQVRRFQQHLYLLKADQINLPKAIKWQQ 296


>gi|328474388|gb|EGF45193.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 10329]
          Length = 438

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 90/195 (46%), Gaps = 23/195 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----KDEV--RYVS 74
           ++VA SGG DS  LL  L     + S   +   A+ V H L E A     K +V  +   
Sbjct: 22  VVVAFSGGVDSRLLLELLRRYREENS---LSCHAVYVHHGLSENADIWADKCQVWAKQAG 78

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLE 133
             CS  R+        NS     L+A  REARY  ++ H   IN   L++T    DDQ+E
Sbjct: 79  ISCSVERVNLDT----NSGESIELLA--REARYEALARH---INRGDLLLTGQHADDQVE 129

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R    KG  LS M +++ +     + RP L  +RE I +      + W ED S
Sbjct: 130 TFLLALKRGSGPKG--LSSMAESMPFAGGTLV-RPLLNIKREQIEATAKNIGLEWVEDES 186

Query: 194 NTDDRFERVRVRRFV 208
           N + R++R  +R  +
Sbjct: 187 NQNTRYDRNFLRHRI 201


>gi|226294081|gb|EEH49501.1| PP-loop family protein [Paracoccidioides brasiliensis Pb18]
          Length = 690

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 6/141 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG DSM L      ++S+R    +      VDH  RE + +E   V+    
Sbjct: 39  PSRIALAVSGGPDSMALAFLCKQLISERLIPDLNVKPFIVDHKAREGSTEEAHNVASWLK 98

Query: 79  RLRIAHSVVS--WKNSKPQTGL---MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+++  W +    + L     +AR+ RY ++    K  N   +   H  DD +E
Sbjct: 99  DLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTVE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMC 154
           TV  R  R    +  G +G+ 
Sbjct: 159 TVLSRLVRG-QRQASGFTGVA 178


>gi|225857820|ref|YP_002739330.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae 70585]
 gi|254789049|sp|C1C992|TILS_STRP7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225721931|gb|ACO17785.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae 70585]
          Length = 425

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET++MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETIFMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|213963862|ref|ZP_03392110.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno]
 gi|213953542|gb|EEB64876.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno]
          Length = 415

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 29/195 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           ILVA+SGG DS+ L   LH             + + + HC   LR  E+  DE  +V + 
Sbjct: 12  ILVAISGGIDSVVLTHLLH----------FHGTELLLAHCNFQLRGEESDGDEA-FVRNF 60

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              L I   V  +   +     Q     AARE RY    E  +T +   + TAH  +D L
Sbjct: 61  AKTLGIPLEVKRFDTKEYAKAHQLNTQLAARELRYEWFYELLETHHCDALATAHHANDNL 120

Query: 133 ETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ET  +   R     G +G+    D I+        RP L+  R+ I  +     + W ED
Sbjct: 121 ETFLINLSRGSGLDGLLGIPQQTDKIV--------RPLLQWSRQQIYDYAEAHELQWRED 172

Query: 192 PSNTDDRFERVRVRR 206
            SN  +++ R  +R 
Sbjct: 173 SSNASNKYVRNVIRH 187


>gi|94501920|ref|ZP_01308430.1| Cell cycle protein MesJ [Oceanobacter sp. RED65]
 gi|94425973|gb|EAT10971.1| Cell cycle protein MesJ [Oceanobacter sp. RED65]
          Length = 446

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 18/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG DS+ LL  L     +     ++   I V+H L E A    ++V  +C    
Sbjct: 26  LYVGLSGGIDSVVLLF-LCKQFVEYHHSSVELHGIHVNHGLSEFADQWQQHVEGLCEAWS 84

Query: 82  IAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I   +VS +    Q G +   AR ARY          +  +++  H  DDQ+ET+  R  
Sbjct: 85  IP--LVSHRVELEQKGSIEEVARNARYDAFKRSLD--DQDVLVLGHHQDDQVETMMQRLM 140

Query: 141 RDYAEKGMGLSGMCD-TILYDLNLW------ISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           R     G GLSG+    +   L+L       I RP L   ++ I  +     + + +D S
Sbjct: 141 R-----GSGLSGLLSMNVARTLDLGNNKQAIILRPLLSTTKKQIEQYANDHQLKYVQDDS 195

Query: 194 NTDDRFER 201
           N D +F+R
Sbjct: 196 NLDTQFDR 203


>gi|123967074|ref|YP_001012155.1| ATPase [Prochlorococcus marinus str. MIT 9515]
 gi|123201440|gb|ABM73048.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9515]
          Length = 338

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 20/199 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-SVDHCLRETAKDEVRYVSDVCS 78
           A +L++VSGG DSM LL    ++++D       F  I   DH   E ++     + + C+
Sbjct: 33  AKLLISVSGGQDSMALL----NLINDMKMQHNWFVNIWHGDHQWHEKSETYALELKNYCN 88

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI---NATLI----MTAHTFDDQ 131
           +  I  S    + +K        AR+ RY  ++E A  +   N   I    +T HT  D 
Sbjct: 89  QKNI--SFFFDRANKQTISSEEKARDWRYKKLTERANQLFIENQKEIDIYLLTGHTNTDN 146

Query: 132 LETVYMRSQR--DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            ET  +   R  +YA    GLS +    L + ++++ RP L   RED + F   + I   
Sbjct: 147 AETFLLNLARGSNYA----GLSYIEKKRLLEPHIFLIRPLLIFSREDTKKFCQLQKIPIW 202

Query: 190 EDPSNTDDRFERVRVRRFV 208
           EDP+N D + +R  +R+ +
Sbjct: 203 EDPTNYDLKIKRNLIRKKI 221


>gi|149194101|ref|ZP_01871199.1| hypothetical protein CMTB2_03413 [Caminibacter mediatlanticus TB-2]
 gi|149136054|gb|EDM24532.1| hypothetical protein CMTB2_03413 [Caminibacter mediatlanticus TB-2]
          Length = 323

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 17/186 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  L   L           I F    V++  RET+ +EV Y   +  +   
Sbjct: 4   LLAFSGGIDSSALFFWLME-------KNIDFDIAIVNYHTRETSDEEVEYAKYLAKKY-- 54

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            +  +  K+   +      AR+ RY    E  K    + ++  H  +D+ E   M+    
Sbjct: 55  -NKKIFIKDCYLKKFSEKKARDCRYTFFEEIIKKYGYSTLILGHQLNDRFEWFLMQ---- 109

Query: 143 YAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
              KG GL  +     ++   +  I RPF    R +I  +L + NI +  D SN D +++
Sbjct: 110 -LSKGAGLKELIAMEKWEEREFYKIYRPFYNLSRREIIEYLHKHNIKYFIDKSNFDIKYK 168

Query: 201 RVRVRR 206
           R  +R+
Sbjct: 169 RNLIRK 174


>gi|83748220|ref|ZP_00945246.1| tRNA(Ile)-lysidine synthetase TilS [Ralstonia solanacearum UW551]
 gi|83725061|gb|EAP72213.1| tRNA(Ile)-lysidine synthetase TilS [Ralstonia solanacearum UW551]
          Length = 475

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 21/217 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           + +   FV S   P  + VA+SGG DS  LL A  +         ++  A+ V H L+  
Sbjct: 24  VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAAAAWRDAAGV-PVRLVALHVHHGLQVD 81

Query: 64  ----ETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
               E A   +    DV C   R+  SV + +      G+  AAREARYA +        
Sbjct: 82  ADAWEVACARMAAAVDVECHVRRVCVSVDAGR------GIEEAAREARYAALDALCAETG 135

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDI 177
           ATL++TAH  DDQ ETV ++  R     G GL G+    +     + + RP+L   R DI
Sbjct: 136 ATLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMERPGGVTLLRPWLDVPRSDI 190

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
            ++     ++W +DPSN D R+ R  +R  +  +  H
Sbjct: 191 ETYARTHALAWVDDPSNHDARYARNALRPLLAGMAGH 227


>gi|307129838|ref|YP_003881854.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii 3937]
 gi|306527367|gb|ADM97297.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii 3937]
          Length = 445

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 8/189 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            H LVA SGG DS    + LH +   R    +   A+ V H L   A     +    C R
Sbjct: 26  GHYLVAYSGGLDSS---VLLHLMTRLRRRRALSLRAVYVHHGLSAHADTWAEHCRVQCLR 82

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +++  V+  +      G+ AAAR ARY  + +H    +   ++TA   DDQ ET  +  
Sbjct: 83  WQVSFDVLPVQVDAHDGGVEAAARAARYQALQQHLH--DGETLLTAQHQDDQSETFLLAL 140

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G               +W+ RP L   RE + ++     ++W ED SN D+R+
Sbjct: 141 KRG---SGPAGLASMAAAAQSNGVWLQRPLLGMTREQLDAYARAYQLAWVEDDSNADERY 197

Query: 200 ERVRVRRFV 208
           +R  +RR V
Sbjct: 198 DRNFLRRQV 206


>gi|283768240|ref|ZP_06341153.1| tRNA(Ile)-lysidine synthetase [Bulleidia extructa W1219]
 gi|283105117|gb|EFC06488.1| tRNA(Ile)-lysidine synthetase [Bulleidia extructa W1219]
          Length = 400

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 115/269 (42%), Gaps = 48/269 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVAVS G DSM L+     +  D     I+ + ++  H  R+ A +E  ++       +I
Sbjct: 9   LVAVSTGPDSMYLVHQCLELGMD-----IQIAHVNYHH--RKQAAEEEAFIRFFAEENQI 61

Query: 83  AHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              V   +N   KP+    A ARE RY   ++  +      ++ AH  +D LET  M+ +
Sbjct: 62  PLHV---RNDAFKPKGNFEAEAREWRYTFFAKIVRKEQLKGVLVAHQQEDLLETFLMQEE 118

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           +       GL     T++  ++  + RP L  R+ +I  +L +    +  D +N +D++ 
Sbjct: 119 KRLEPDYFGLKER--TMMQGIS--VVRPLLTMRKAEILRYLDEHQYRYFIDHTNLEDKYR 174

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R ++R        H+    M  F                      MR   A+ Q+I   +
Sbjct: 175 RNQIR--------HSQVETMTDF----------------------MRE--ALLQEINRRN 202

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMER 289
           S L     RV+  I  G++SL  YR++E+
Sbjct: 203 SILQERRHRVAKYIQKGKVSLKLYRNLEK 231


>gi|207743488|ref|YP_002259880.1| hypothetical protein RSIPO_01666 [Ralstonia solanacearum IPO1609]
 gi|206594886|emb|CAQ61813.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 462

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 101/217 (46%), Gaps = 21/217 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           + +   FV S   P  + VA+SGG DS  LL A  +         ++  A+ V H L+  
Sbjct: 11  VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAAAAWRDAAGV-PVRLVALHVHHGLQVD 68

Query: 64  ----ETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
               E A   +    DV C   R+  SV + +      G+  AAREARYA +        
Sbjct: 69  ADAWEVACARMAAAVDVECHVRRVCVSVDAGR------GIEEAAREARYAALDALCAETG 122

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDI 177
           ATL++TAH  DDQ ETV ++  R     G GL G+    +     + + RP+L   R DI
Sbjct: 123 ATLLLTAHHLDDQAETVLLQLLR-----GAGLDGLSAMPMERPGGVTLLRPWLDVPRSDI 177

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
            ++     ++W +DPSN D R+ R  +R  +  +  H
Sbjct: 178 ETYARTHALAWVDDPSNHDARYARNALRPLLAGMAGH 214


>gi|208779899|ref|ZP_03247243.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           novicida FTG]
 gi|208744354|gb|EDZ90654.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           novicida FTG]
          Length = 398

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 16/193 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77
           P+HI++  SGG DS  +L+ +   L       I   AI ++H L R++ K ++ +    C
Sbjct: 17  PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            R  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++ R     G GL+G+     Y    +  + RP L+  + +I  F    NIS+  D SN 
Sbjct: 129 QAIR-----GSGLAGLAGIPYYKELQHGGVLRPLLKYSKIEIEEFAKLNNISYIYDDSNE 183

Query: 196 DDRFERVRVRRFV 208
           D ++ R  +R  +
Sbjct: 184 DIKYRRNLIRNQI 196


>gi|315222833|ref|ZP_07864718.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211]
 gi|315188069|gb|EFU21799.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211]
          Length = 425

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DSM LL  L+     R   +I+     ++H +R+ +  E   +  +  +L 
Sbjct: 22  VLLAISGGLDSMTLLDWLYKY---REKLEIEIFLAHINHGVRKESDFEEEELKKIAKKLG 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  S+ +   S P +     AR+ RYA   +     N T ++TAH  DDQ ET++MR  R
Sbjct: 79  V--SIFTSSFSGPFSE--QKARDFRYAFFKKIMLEENCTALVTAHHADDQAETIFMRILR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   +SGM +   +  N  + RP L  ++ +         I   ED +N ++ + R
Sbjct: 135 --GSRLFHISGMKEKQKF-ANGELIRPLLSFQKSNFPP------IFHFEDWTNQENHYLR 185

Query: 202 VRVR 205
            R+R
Sbjct: 186 NRIR 189


>gi|322386421|ref|ZP_08060050.1| tRNA(Ile)-lysidine synthetase [Streptococcus cristatus ATCC 51100]
 gi|321269507|gb|EFX52438.1| tRNA(Ile)-lysidine synthetase [Streptococcus cristatus ATCC 51100]
          Length = 424

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM L    H +  +R   +I+     V+H  R  +  E + +S+   +L 
Sbjct: 22  VLVAVSGGLDSMTLF---HLLYQNREELEIELGIAHVNHKQRPESNMEEKELSNFAQQLG 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +     ++     +      AR  RY    E       T ++TAH  DDQ ETV+MR  R
Sbjct: 79  VKFFSSNFSGDFSE----EKARRFRYRFFEEVMLAEGYTALVTAHHADDQAETVFMRLLR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM +   +  N  + R  L   ++D    L        ED SN  + + R
Sbjct: 135 --GARLRHLSGMTEVQSF-ANGELIRLLLHFHKQDFPDIL------HFEDKSNLQNDYLR 185

Query: 202 VRVR 205
            R+R
Sbjct: 186 NRIR 189


>gi|315612149|ref|ZP_07887064.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 49296]
 gi|315315710|gb|EFU63747.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 49296]
          Length = 425

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 24/199 (12%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66
           F+R   +  H  +++A+SGG DSM L   L +  ++     I+     V+H  R  +   
Sbjct: 10  FLRKEYFKKHSKVVLALSGGLDSMFLFHLLSTYQNELG---IELILAHVNHKQRSESDWE 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           ++E+R ++D  + L I  +  S   S+      A ARE RY    +  K + AT ++TAH
Sbjct: 67  ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKEVGATALVTAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ MR  R    +   L+G+ ++ + D  + I RP L   ++D         I
Sbjct: 120 HADDQVETILMRLIR--GSRLRYLTGIKESQVVD-GIEIIRPLLHFHKKDFPP------I 170

Query: 187 SWCEDPSNTDDRFERVRVR 205
              ED +N ++ + R R+R
Sbjct: 171 VHFEDQTNQENTYFRNRIR 189


>gi|144575199|gb|AAZ44022.2| conserved hypothetical protein [Mycoplasma synoviae 53]
          Length = 291

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79
           L+AVSGG+DSM LL             K K   I V H     R  +  +   V + C +
Sbjct: 6   LIAVSGGADSMFLL------------DKYKHKNIIVAHVNYNQRNDSNFDEELVRNYCEK 53

Query: 80  LRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             I   ++S        G     AR+ARY+   +  K  N   ++ AH   D LET YM+
Sbjct: 54  NNIKLEILSLNKQDFLKGNFQDWARKARYSFFEKVYKKHNCNKLLIAHHKLDFLETYYMQ 113

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197
            + +      G+     + ++D++++  RPFL +  ++ I  F  +  I + +D SN + 
Sbjct: 114 KESNKMNFFYGIKKR--SFIFDMHVY--RPFLYKYTKKQICKFCRKNKIPYRDDYSNFES 169

Query: 198 RFERVRVRR 206
           ++ R  VR+
Sbjct: 170 KYTRNIVRK 178


>gi|29831207|ref|NP_825841.1| cell cycle protein [Streptomyces avermitilis MA-4680]
 gi|61217336|sp|Q82EF1|TILS_STRAW RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29608321|dbj|BAC72376.1| putative cell cycle protein [Streptomyces avermitilis MA-4680]
          Length = 345

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 15/200 (7%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---- 65
           R     L  P  +LVA SGG+DSM L  AL         G I+   I+VDH L+      
Sbjct: 34  RDVPHDLPPPPLVLVACSGGADSMALASAL--AFEAPKLG-IRAGGITVDHGLQSGSDLR 90

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A + V  + D+      + +V   ++  P+     A   A  A    H     A  ++  
Sbjct: 91  ADEVVGRLVDLGLTPTESIAVTVGRDGGPEAAARDARYAALDAAARRH----GACAVLLG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV +   R    +   LSGM    +        RPFL+  R+  R   + ++
Sbjct: 147 HTRDDQAETVLLGLARGSGIR--SLSGMA--AVSGTGGRYRRPFLQLDRQTARKACMAQS 202

Query: 186 ISWCEDPSNTDDRFERVRVR 205
           +   +DP N D  + R R+R
Sbjct: 203 LPVWDDPHNADPAYTRSRLR 222


>gi|297181898|gb|ADI18075.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [uncultured Acidobacteriales bacterium
           HF0200_23L05]
          Length = 485

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++VA+SGG DS+ L   L  + +   +  + F  + ++H LR  A ++  +   +   
Sbjct: 37  GRVVVALSGGGDSVVLAHLLCEMSAIARWSVVGF--LHINHQLRAVANEDADFCRQLSDE 94

Query: 80  LRIAH--SVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L +      V+ +      G+    A    RY + +   ++  A  + T HT DD  ETV
Sbjct: 95  LHVPFLIEAVNVRAMSRDRGISIEEAGHRLRYEIFNRICRSHLADCVATGHTRDDLAETV 154

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +R  R    +G  LSG     +   N ++ RP L   R+++R +L  R +   ED +N 
Sbjct: 155 LLRLIRGAGPRG--LSG-----IRPRNGFVVRPLLDVTRKELREYLQVRGLPHREDATNE 207

Query: 196 DDRFERVRVR 205
           D    R R+R
Sbjct: 208 DTSVARNRIR 217


>gi|184201576|ref|YP_001855783.1| putative tRNA(Ile)-lysidine synthase [Kocuria rhizophila DC2201]
 gi|183581806|dbj|BAG30277.1| putative tRNA(Ile)-lysidine synthase [Kocuria rhizophila DC2201]
          Length = 359

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 7/191 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +L+  SGG+DS+ L  A   +   +  G  +  A+ VDH L++ + +     +    
Sbjct: 23  PPLVLLGCSGGADSLALAAAAAHL---QRRGTCRVGAVVVDHQLQDGSGEVAHRAAQTLR 79

Query: 79  RLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            L +    V   + ++  TG   AAR ARY           A  ++  HT DDQ ETV +
Sbjct: 80  GLGLDPVHVERVHVTRRGTGPEMAARLARYEAFRSVVARTGAAAVLLGHTRDDQAETVLL 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +   LSGM +  + D  L++ RP L   R +  +      +    DPSN D 
Sbjct: 140 GLTRGSGTR--SLSGMPERRVEDGVLYL-RPLLNVTRAETETVCAAEGLEPWLDPSNADT 196

Query: 198 RFERVRVRRFV 208
              R R+R  V
Sbjct: 197 ALTRSRIRHEV 207


>gi|307707910|ref|ZP_07644385.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis NCTC 12261]
 gi|307615975|gb|EFN95173.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis NCTC 12261]
          Length = 425

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 114/254 (44%), Gaps = 31/254 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKVVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRVESDWEEQELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFLS------IFHFEDTSNKENHY 183

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R R+R       L  L  +  +F+D  + + N +           +   +AI++   NI
Sbjct: 184 FRNRIRNSY----LPELEKENPRFRDAILSIGNEI-----------LDYDLAIAELSKNI 228

Query: 260 DSTLLFYLLRVSAA 273
           D   L+ LL  S +
Sbjct: 229 DVENLYQLLSYSES 242


>gi|24378543|ref|NP_720498.1| putative cell-cycle protein [Streptococcus mutans UA159]
 gi|61217358|sp|Q8DWM9|TILS_STRMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|24376391|gb|AAN57804.1|AE014853_11 putative cell-cycle protein [Streptococcus mutans UA159]
          Length = 423

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +IL+AVSGG DSM LL  LH         +I+ +   V+H  R  A +E  Y+ +     
Sbjct: 21  NILIAVSGGVDSMNLLHFLHIYQKKL---QIRIAVAHVNHKQRPQADEEEIYLKNWARDN 77

Query: 81  RIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I      +K      G+ +   AR+ RY       K    T ++TAH  +DQ ETV++R
Sbjct: 78  HIPFYTAVFK------GIFSEKKARDFRYTFFKNIMKEHGYTALVTAHHANDQAETVFLR 131

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   L+G+ +   +  N  + RPFL+  ++++       NI   +D SN  D 
Sbjct: 132 LLR--GSRLRYLTGIKEIQEFG-NGQLIRPFLKFHKKEL------PNIFHFDDDSNQGDS 182

Query: 199 FERVRVR 205
           + R R+R
Sbjct: 183 YLRNRIR 189


>gi|325832756|ref|ZP_08165519.1| tRNA(Ile)-lysidine synthetase [Eggerthella sp. HGA1]
 gi|325485895|gb|EGC88356.1| tRNA(Ile)-lysidine synthetase [Eggerthella sp. HGA1]
          Length = 372

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 35/203 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           L+ VSGGSDS  L      +    + G++    + V+H LR E A ++ R+V+ +   L 
Sbjct: 31  LLMVSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLD 88

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISE-------HAKT-INATLIMTAHTFD 129
           +        ++ +  +    + A AR  RY   +E       HA T +    I+TAHT D
Sbjct: 89  VPLFSCDIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTAD 148

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-- 187
           D++E+ YMRS       G G  G     +   N  + RP L   RE++R+++ +R     
Sbjct: 149 DRVESFYMRSI-----VGTGPGGF--RAMKYRNGPVVRPLLDASREELRAYIAERERDGA 201

Query: 188 ----------WCEDPSNTD-DRF 199
                     W ED +N   DRF
Sbjct: 202 PVACDDAGCLWREDATNAHTDRF 224


>gi|256422772|ref|YP_003123425.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588]
 gi|256037680|gb|ACU61224.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588]
          Length = 445

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 29/190 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           +L+AVSGG DS+ ++  L      R          ++ HC   LR  E+ +DE  + +D+
Sbjct: 23  LLLAVSGGVDSV-VMAHLFKAAGYR---------FAIAHCNFQLRGDESVRDE-SFAADL 71

Query: 77  CSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             RL++    V     ++  SK +  +  AARE RY  + +  +    + I+TAH   D 
Sbjct: 72  ARRLQVTFHQVRFDTEAYTESK-RVSIQVAARELRYEWLEQTREQGGYSYIVTAHHMQDS 130

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ M        KG G++G+   +     L   RP L   +E++ ++  + +I + ED
Sbjct: 131 VETLLMN-----LSKGTGIAGLHGILPKQGKLL--RPLLFAEKENLIAYAAEHHIPYVED 183

Query: 192 PSNTDDRFER 201
            SN   ++ R
Sbjct: 184 SSNLTVKYTR 193


>gi|164428026|ref|XP_956207.2| hypothetical protein NCU01570 [Neurospora crassa OR74A]
 gi|16416041|emb|CAD01129.1| conserved hypothetical protein [Neurospora crassa]
 gi|157071979|gb|EAA26971.2| predicted protein [Neurospora crassa OR74A]
          Length = 797

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 39/169 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSF-----------------GKIKFSAISVDHCLR 63
           HI  A+SGG DSM L    H +  ++S                  GK++  A+ VDH LR
Sbjct: 37  HIGCAISGGVDSMALAFLFHRLKQEKSLNASVSPNEQFRVGDNILGKVR--AVIVDHGLR 94

Query: 64  ETAKDEVRYVSDVCSRLRIAHSV------VSWK-------NSKPQTGLMAAAREARYALI 110
           E + +E + V+    + +I   V      ++W+       + K    +   AR+ RYA I
Sbjct: 95  EGSDEEAQKVAHAI-KTKIGDMVDPTIETINWESELGPGVDPKTHPSIEPLARKLRYAAI 153

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMR--SQRDYAEKGMGLSGMCDTI 157
           +   +  N   + T H  DDQ ET+ MR  S R Y     GL G+ + +
Sbjct: 154 AGVCQRHNICSLFTGHHEDDQYETILMRMISGRGY----RGLQGIPNAV 198


>gi|332800081|ref|YP_004461580.1| tRNA(Ile)-lysidine synthase [Tepidanaerobacter sp. Re1]
 gi|332697816|gb|AEE92273.1| tRNA(Ile)-lysidine synthase [Tepidanaerobacter sp. Re1]
          Length = 462

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++VAVSGG DS+ LL   H  ++ +S   I   A  +DH  R   ++++  +V  +C R 
Sbjct: 23  VIVAVSGGPDSVCLL---HLFMTFKSELDISLYAAHLDHMFRGRESEEDACFVKTLCDRW 79

Query: 81  RIA--HSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +      ++      ++GL    AAR  RY       K   A  + T H  +D  ET+ 
Sbjct: 80  GVPLFSENINVPEYVKKSGLSPEDAARRVRYDFFERVKKQTGAQKVATGHNRNDHEETIL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-T 195
           M   R     G GL G+   I    + +I RP +   REDI  +L  + I +  D +N T
Sbjct: 140 MNIFR-----GAGLDGLI-GIEPVRDCYI-RPLIEIPREDIERYLKHKEIPFRIDATNLT 192

Query: 196 DDRF 199
            D F
Sbjct: 193 TDYF 196


>gi|85057872|ref|YP_456788.1| cell cycle protein MesJ [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123518068|sp|Q2NIN4|TILS_AYWBP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|84789977|gb|ABC65709.1| cell cycle protein MesJ [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 436

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 12/186 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++AVSGG DSM LL   H +++     KIK   +  +H            V + C  L+ 
Sbjct: 17  IIAVSGGVDSMALL---HYLVAQ----KIKLQVVHFNHLTNSNTWKNKELVKNYC--LQN 67

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           +     ++ + PQ    A AR  R   + + A       I+TAH  DD  ET+  +  R 
Sbjct: 68  SLGFHYFELNCPQKNFQAQARLLRQQKLMQIAAKHRTPFILTAHHLDDLAETILQKISR- 126

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            +   +G SGM     +   +++ +PFL   +  I S+     I + ED +N    ++R 
Sbjct: 127 -SSTLLGYSGMQIQTSWTDFIFL-KPFLYIPKAKIISYAAFYKIPFLEDYTNQKLTYQRN 184

Query: 203 RVRRFV 208
           ++R  V
Sbjct: 185 QIRHQV 190


>gi|295104817|emb|CBL02361.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 478

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 86/191 (45%), Gaps = 16/191 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
           P  +  AVSGG+DSM LL+ L  +     FG    SA  V+H LR ++A  +  +V   C
Sbjct: 24  PLQLAAAVSGGADSMALLLLLRQLQP--RFG-YTLSACHVNHGLRGQSADRDEAFVRAEC 80

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAA--AREARY-ALISEHAKTINATLIMTAHTFDDQLET 134
           +RL +   V       P         AR  RY A +    + I+A  I TAHT +DQ ET
Sbjct: 81  ARLGVPLRVFHAAELTPPPAHAGEDWARRLRYTAFVQLQGQGIDA--IATAHTANDQAET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +R  R     G GL G    I      ++ RP L   R +  +       +W  D +N
Sbjct: 139 LLLRLAR-----GTGLHGA-GGIRPRRGCYL-RPLLCLSRAETEAVCRAAGQTWVTDETN 191

Query: 195 TDDRFERVRVR 205
             D + R R+R
Sbjct: 192 DTDAYARNRLR 202


>gi|260437759|ref|ZP_05791575.1| tRNA(Ile)-lysidine synthase [Butyrivibrio crossotus DSM 2876]
 gi|292809781|gb|EFF68986.1| tRNA(Ile)-lysidine synthase [Butyrivibrio crossotus DSM 2876]
          Length = 457

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 17/193 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V +SGG+DS+ L   L  + S   F  I   A+ V H +R E A  ++ +  ++C R 
Sbjct: 21  VIVGLSGGADSVALFHVLRELRSRYGFSII---AVHVHHGIRGEEADRDLDFCRNLCRRY 77

Query: 81  RIAHSVVSWKNSKPQTGL----MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +      +   K    L      A R+ RY      A     + I  AH  +D+ ETV 
Sbjct: 78  GVELREFFYDIPKLAKELSLSPEEAGRKVRYDSFRSVASEYENSRIAVAHHGNDRAETVI 137

Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
               R    KG+ G+  M D I+        RP L   + DI  +L + +  +C D +N 
Sbjct: 138 FNMTRGTGMKGLRGIVPMRDNII--------RPLLCVTKADILGYLDEIHQDYCLDSTNE 189

Query: 196 DDRFERVRVRRFV 208
            + + R R+R  +
Sbjct: 190 SNDYSRNRIRNVI 202


>gi|229917403|ref|YP_002886049.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
 gi|229468832|gb|ACQ70604.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
          Length = 408

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 18/186 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL  L     D            V H LRE + +E  +V+ V +  +
Sbjct: 4   VLVAVSGGVDSIVLLDRLVKQGWD-------VGVAHVHHGLREASDEEYTFVAHVAASYQ 56

Query: 82  IA-HSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +A H   + ++    Q    A  R+ARY    +         + TAH  DD LETV ++ 
Sbjct: 57  VAFHGTRLHFQEGASQ----AHYRKARYHFFEDVMNEHGYDTLATAHHADDVLETVLIQL 112

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R+  E    + G+ +  ++     I RP L+  +  +  +  +  ++W ED +N +  +
Sbjct: 113 HRNVIE----VKGIPERRVFGRGTLI-RPLLKETKAQLIEYARKNELAWREDATNQEVTY 167

Query: 200 ERVRVR 205
            R R+R
Sbjct: 168 LRNRIR 173


>gi|213404712|ref|XP_002173128.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces
           japonicus yFS275]
 gi|212001175|gb|EEB06835.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces
           japonicus yFS275]
          Length = 462

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 151/374 (40%), Gaps = 45/374 (12%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEV---RYVSDVCSR 79
           VAVSGG DSM L+  L   +    + K +  A  V+H LR E+A+D V   R + D+   
Sbjct: 26  VAVSGGVDSMCLVHLLRETMLQYLWPK-RIHAFIVEHGLRKESAEDAVITRRRLLDMGIP 84

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I      W  SK Q+ +   AR  RY  +++         + TAH  +DQ ET+ MR 
Sbjct: 85  STILPLNHKWDLSK-QSKIETIARVLRYRTLAKACLRHKIYGLFTAHHLNDQYETIVMRL 143

Query: 140 QRDYAEKGMGLSGM--------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            +       GL G+         + I     + + RPFL   +  I+     + + WCED
Sbjct: 144 LQRKPGTWGGLCGIRKVAPLPESEDIYGADQILLLRPFLSYPKTCIK-----KKVQWCED 198

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHM 246
            SN D +     VR  +R + +  L         + FQ+L      +V  L+ +   ++ 
Sbjct: 199 KSNKDIQLT---VRNAIRAVGVDTLVSTEIASISQTFQELEDHSQKSVHSLLKQCSCLYF 255

Query: 247 RSIIAISQDILN---------IDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKS 296
           ++I +    I           I +  L YL+  ++      + S+ G    +R+    K 
Sbjct: 256 KAIHSFQMQIPCIIMDTSSDFIKTEFLMYLIDIITPKTKKKRRSIEGIS--KRLWNSTKP 313

Query: 297 GKRGCVSIGRVVIDRRANF-LWITRAV-----RNLPTLILYPEETTVWDGRYQFQNLSDS 350
              G  S      D  +++ L+ITR           T +L    T +WD R+  Q   DS
Sbjct: 314 LTAGGCSFTLTKDDNCSSYILFITREQFSKRDAQKATFVLKNGSTILWDNRFWVQVKYDS 373

Query: 351 LIQIGPQSYRKADV 364
                 +  +  D+
Sbjct: 374 AKSFTIRPLKSGDI 387


>gi|301167026|emb|CBW26605.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Bacteriovorax
           marinus SJ]
          Length = 430

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 15/201 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL  L  +  +++F   + SA  ++H  R     E  +  ++C  L+
Sbjct: 34  ICVALSGGVDSVTLLYCLKWI--EQNFNGPRISAHHINHGTRRENIREEDFCRELCRELK 91

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V         T     ARE RYA           + +      DD  E   M+S R
Sbjct: 92  VPLKVSKVSLDLLSTNFEMKARELRYAEFKNELAP--HSFMALGQHIDDSYEWSLMQSFR 149

Query: 142 DYA-EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                  +G+  +C       N    RPF+   ++ I++   +  ++W ED SN + RF+
Sbjct: 150 SATPSTSLGIP-VC-------NGSFIRPFMCLTKDQIKTLAKKLELTWYEDHSNDNVRFD 201

Query: 201 RVRVRRFVRD--IDLHALYLK 219
           R  +R+ +     D +  YLK
Sbjct: 202 RNYIRKNITTSIADRYPKYLK 222


>gi|223933450|ref|ZP_03625435.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis 89/1591]
 gi|302023120|ref|ZP_07248331.1| PP-loop family protein [Streptococcus suis 05HAS68]
 gi|330831862|ref|YP_004400687.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis ST3]
 gi|223897888|gb|EEF64264.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis 89/1591]
 gi|329306085|gb|AEB80501.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis ST3]
          Length = 422

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM L    H +   +    I+     ++H  RE +  E +Y+  +     
Sbjct: 21  VLVAVSGGLDSMNLF---HLLYECKQVLGIELGIAHINHGQREESVIEEKYLRQLAEESN 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +  ++    +     AAR+ RY   +   +    T ++TAH  DDQ ETV+MR  R
Sbjct: 78  VPFYLSYFEGVFSE----EAARKWRYGFFATIMEKEGYTALVTAHHADDQAETVFMRLIR 133

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LS +  T  +     I RP L  ++ D             ED SN D ++ R
Sbjct: 134 --GGRLRHLSAIQPTQPFATGELI-RPLLSFKKADFEKLF------HFEDCSNADFKYFR 184

Query: 202 VRVR 205
            RVR
Sbjct: 185 NRVR 188


>gi|71274509|ref|ZP_00650797.1| PP-loop [Xylella fastidiosa Dixon]
 gi|71900338|ref|ZP_00682473.1| PP-loop [Xylella fastidiosa Ann-1]
 gi|170730758|ref|YP_001776191.1| cell cycle protein [Xylella fastidiosa M12]
 gi|71164241|gb|EAO13955.1| PP-loop [Xylella fastidiosa Dixon]
 gi|71729913|gb|EAO32009.1| PP-loop [Xylella fastidiosa Ann-1]
 gi|167965551|gb|ACA12561.1| cell cycle protein [Xylella fastidiosa M12]
          Length = 435

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 18/192 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           +LVA SGG DS  LL  L S  + R  G     AI + H L E A     + +  C+   
Sbjct: 15  VLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNEHADAWTAHCAAFCTQHD 71

Query: 79  -RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            RL IA   VS  + +        AR A +A   +H        +  AH  DDQ ET  +
Sbjct: 72  IRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHGH-----YLALAHHCDDQAETWLL 126

Query: 138 RSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R+ R   +   GL+ M   T     +LW  RP L   R  +  +  Q+++ W ED SN D
Sbjct: 127 RALRGSCD---GLAAMRPLTPFAAGHLW--RPLLTHTRAQLLDYAQQQHLDWIEDSSNVD 181

Query: 197 DRFERVRVRRFV 208
            R +R  +R  V
Sbjct: 182 LRHDRNFLRIHV 193


>gi|319949370|ref|ZP_08023439.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4]
 gi|319436953|gb|EFV92004.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4]
          Length = 223

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++ AHT DDQ ETV +   R    +   L GM     +D   W  RP L  R  D R+  
Sbjct: 9   VLLAHTLDDQAETVLLGLGRGSGARS--LRGMA---AWDAP-W-GRPLLGVRAADTRAAC 61

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
           L   ++W +DP NTD  + RVRVRR V
Sbjct: 62  LGLGLTWWDDPHNTDPTYTRVRVRREV 88


>gi|317488918|ref|ZP_07947448.1| hypothetical protein HMPREF1023_01147 [Eggerthella sp. 1_3_56FAA]
 gi|316911992|gb|EFV33571.1| hypothetical protein HMPREF1023_01147 [Eggerthella sp. 1_3_56FAA]
          Length = 371

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 35/203 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           L+ VSGGSDS  L      +    + G++    + V+H LR E A ++ R+V+ +   L 
Sbjct: 30  LLMVSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLD 87

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISE-------HAKT-INATLIMTAHTFD 129
           +        ++ +  +    + A AR  RY   +E       HA T +    I+TAHT D
Sbjct: 88  VPLFSCDIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTAD 147

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-- 187
           D++E+ YMRS       G G  G     +   N  + RP L   RE++R+++ +R     
Sbjct: 148 DRVESFYMRSI-----VGTGPGGF--RAMKYRNGPVVRPLLDASREELRAYIAERERDGA 200

Query: 188 ----------WCEDPSNTD-DRF 199
                     W ED +N   DRF
Sbjct: 201 PVACDDAGCLWREDATNAHTDRF 223


>gi|212694903|ref|ZP_03303031.1| hypothetical protein BACDOR_04440 [Bacteroides dorei DSM 17855]
 gi|237727139|ref|ZP_04557620.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D4]
 gi|265750423|ref|ZP_06086486.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212662463|gb|EEB23037.1| hypothetical protein BACDOR_04440 [Bacteroides dorei DSM 17855]
 gi|229433995|gb|EEO44072.1| tRNA(Ile)-lysidine synthase [Bacteroides dorei 5_1_36/D4]
 gi|263237319|gb|EEZ22769.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 434

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG+DS+ LL  L  +          F      H   E +  + R+V+++C  L 
Sbjct: 22  VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 75

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +A  V  +      S+    +  AARE RY    +  K     +I  AH  DD +ET  +
Sbjct: 76  VALHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGGAVIAVAHHRDDSVETFLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+     +  N  I RP L   R+DI  +L      +  D +N  D
Sbjct: 136 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYMRNKIR 196


>gi|89256102|ref|YP_513464.1| PP-loop family protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314576|ref|YP_763299.1| PP-loop superfamily ATPase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502120|ref|YP_001428185.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010788|ref|ZP_02275719.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           tularensis subsp. holarctica FSC200]
 gi|290954514|ref|ZP_06559135.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312030|ref|ZP_06802845.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325399|sp|Q0BMM2|TILS_FRATO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|122500940|sp|Q2A488|TILS_FRATH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|166988058|sp|A7NB76|TILS_FRATF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|89143933|emb|CAJ79152.1| PP-loop family protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129475|gb|ABI82662.1| probable PP-loop superfamily ATPase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252723|gb|ABU61229.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 398

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 16/193 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77
           P+HI++  SGG DS  +L+ +   L       I   AI ++H L R++ K ++ +    C
Sbjct: 17  PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++ R     G GL+G+     Y    +  + RP L+  + DI  F    NIS+  D SN 
Sbjct: 129 QAIR-----GSGLAGLASIPHYKELHHGGVLRPLLKYSKIDIEGFAKLNNISYIYDDSNE 183

Query: 196 DDRFERVRVRRFV 208
           D ++ R  +R  +
Sbjct: 184 DIKYRRNLIRNQI 196


>gi|237710749|ref|ZP_04541230.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455471|gb|EEO61192.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 434

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG+DS+ LL  L  +          F      H   E +  + R+V+++C  L 
Sbjct: 22  VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 75

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +A  V  +      S+    +  AARE RY    +  K     +I  AH  DD +ET  +
Sbjct: 76  VALHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGGAVIAVAHHRDDSVETFLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+     +  N  I RP L   R+DI  +L      +  D +N  D
Sbjct: 136 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYMRNKIR 196


>gi|261880480|ref|ZP_06006907.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella bergensis DSM 17361]
 gi|270332819|gb|EFA43605.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella bergensis DSM 17361]
          Length = 455

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 21/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           LVA+SGG+DS+ LL  L  +            A+  +  LR  E+ +DE   V+ +C ++
Sbjct: 24  LVALSGGADSVALLCVLKRL-------GYHIEAVHCNFHLRGKESMRDEDFCVA-LCEKM 75

Query: 81  RIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +     H   +   +  Q  +  AARE RY    +  K ++A  I  AH  DDQ+ETV 
Sbjct: 76  NMTLHRIHFDTTTYATLHQISIEMAARELRYGYFEQLRKDLSADDICVAHHRDDQVETVL 135

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GL G+    +   N  + RP L   R+++ S+L      +  D SN  
Sbjct: 136 LNLVR-----GTGLVGL--QGMKPRNGNVVRPMLAVSRDEVESYLNSIEQDYVTDSSNLI 188

Query: 197 DRFERVRVR 205
           +   R ++R
Sbjct: 189 NDVMRNKLR 197


>gi|251781481|ref|YP_002995782.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390109|dbj|BAH80568.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 428

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  LH    D    +I      ++H  R  ++ E  Y+    +   
Sbjct: 23  VLIAVSGGVDSMNLLHFLHLFQEDL---QISIGIAHINHKQRIESEIEEDYLRQWANN-- 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             HSV  + +         AAR+ RY    +  +    + ++TAH  DDQ ETV MR  R
Sbjct: 78  --HSVPIYISHFEGIFSEKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETVLMRLIR 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSG+     +  N  + RPFL   + D+       NI   ED SN +    R
Sbjct: 136 --GSRLRHLSGIKPVQPFG-NGQLIRPFLSFSKGDL------PNIFHFEDTSNEETTVFR 186

Query: 202 VRVR 205
            RVR
Sbjct: 187 NRVR 190


>gi|186940996|dbj|BAG31126.1| putative cell cycle protein [Xanthomonas perforans 91-118]
          Length = 450

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 9/191 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +L+A SGG DS    + LH + +   +    F A+ V H L   A     +    C 
Sbjct: 30  PGPVLLAYSGGMDSS---VLLHLLAATPRYRHAGFRALHVHHGLHADADAWAAHCQRTCD 86

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L++   +V  + ++  +GL   A        +          +  AH  DDQ ET  +R
Sbjct: 87  TLQVPLQIVRVQVAR-DSGLGLEAAARHARHAAFAQALTAGEWLALAHHRDDQAETFLLR 145

Query: 139 SQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           + R  A    GL+ M          LW  RP L   R D+ ++   + + W EDPSN D 
Sbjct: 146 ALR--ASGPEGLAAMRPQRPFASGTLW--RPMLAHARADLLAYAHAQGLRWIEDPSNADP 201

Query: 198 RFERVRVRRFV 208
           R +R  +R  V
Sbjct: 202 RHDRNFLRSQV 212


>gi|94266523|ref|ZP_01290211.1| PP-loop [delta proteobacterium MLMS-1]
 gi|93452852|gb|EAT03372.1| PP-loop [delta proteobacterium MLMS-1]
          Length = 382

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 92/231 (39%), Gaps = 53/231 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVS G DSM LL AL ++    +      +A  +DH LR       + +  + +R  
Sbjct: 24  VLVAVSAGPDSMALLYALAALRGVAAMPAFSLAAAYIDHGLRPAESGREQELVAIAAR-- 81

Query: 82  IAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                ++W+  +             L  AARE RY  + E A  + A  +  AH  DDQ 
Sbjct: 82  --ELGITWRGGRVTAREYAARHGLSLEHAARELRYRCLQELAGELAANTLAVAHQADDQA 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--------------------------------- 159
           E + +R  R  A +  GLSGM  + L                                  
Sbjct: 140 EELLLRLLRGTARE--GLSGMAWSRLLADAGSGSAGPGIGGGADATFSKAEAVGAEPAAP 197

Query: 160 -----DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
                D  L + RP L   + +I S+L +R I   ED SN D RF R RVR
Sbjct: 198 RPAGVDNGLRLIRPLLAAPKAEILSYLARRGIVHAEDSSNQDRRFLRNRVR 248


>gi|319757185|gb|ADV69127.1| ATPase [Streptococcus suis JS14]
          Length = 422

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM L    H +   +    I+     ++H  RE +  E +Y+  +     
Sbjct: 21  VLVAVSGGLDSMNLF---HLLYECKQVLGIELGIAHINHGQREESVIEEKYLRQLAEESN 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +  ++    +     AAR+ RY   +   +    T ++TAH  DDQ ETV+MR  R
Sbjct: 78  VPFYLSYFEGVFSE----EAARKWRYGFFATIMEKEGYTALVTAHHADDQAETVFMRLIR 133

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LS +  T  +     I RP L  ++ D             ED SN D ++ R
Sbjct: 134 --GGRLRHLSAIQPTQPFATGELI-RPLLSFKKADFEKLF------HFEDCSNADFKYFR 184

Query: 202 VRVR 205
            RVR
Sbjct: 185 NRVR 188


>gi|254373192|ref|ZP_04988681.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570919|gb|EDN36573.1| tRNA(Ile)-lysidine synthase [Francisella novicida GA99-3549]
          Length = 398

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 16/193 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77
           P+HI++  SGG DS  +L+ +   L       I   AI ++H L R++ K ++ +    C
Sbjct: 17  PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            R  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQLYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++ R     G GL+G+     Y    +  + RP L+  + +I  F    NIS+  D SN 
Sbjct: 129 QAIR-----GSGLAGLAGIPYYKELQHGGVLRPLLKYSKIEIEEFAKLNNISYIYDDSNE 183

Query: 196 DDRFERVRVRRFV 208
           D ++ R  +R  +
Sbjct: 184 DIKYRRNLIRNQI 196


>gi|124267639|ref|YP_001021643.1| putative cell cycle protein [Methylibium petroleiphilum PM1]
 gi|171769838|sp|A2SIL9|TILS_METPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|124260414|gb|ABM95408.1| putative cell cycle protein [Methylibium petroleiphilum PM1]
          Length = 452

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 95/198 (47%), Gaps = 12/198 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           RS   P  + VA SGG DS  LL A  ++++ R  G +   A+ V H L   A   + + 
Sbjct: 14  RSAEPPRGLAVAYSGGRDSTALLHA--TLIAARDSG-LTVHALHVHHGLSARADAWLAHC 70

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTG------LMAAAREARYALISEHAKTINATLIMTAHT 127
              C R       V ++  + Q        L A AR ARYA +   A      L++ AH 
Sbjct: 71  ESQCRRWARRGLPVCFRAMRVQLACRSGDSLEAVARAARYAALRTLAVEQGVALVLLAHH 130

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             DQ ET+ +++ R       GL+GM  +I  D   W +RP+L   RE I +++ +  +S
Sbjct: 131 QRDQAETLLLQALRGAGV--AGLAGMPRSIERDGITW-ARPWLARPREAIEAYVRRYRLS 187

Query: 188 WCEDPSNTDDRFERVRVR 205
           + +D SN D RF R R+R
Sbjct: 188 YIDDDSNDDPRFARNRLR 205


>gi|315224848|ref|ZP_07866669.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga ochracea F0287]
 gi|314945251|gb|EFS97279.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga ochracea F0287]
          Length = 428

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 31/193 (16%)

Query: 25  AVSGGSDSMGL--LIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE----VR-YVS 74
           A+SGG DS+ L  L+  H +             + + HC   LR T  D+    VR + +
Sbjct: 16  AISGGIDSVVLAHLLYTHGI------------ELLLAHCNFQLRGTESDDDEAFVRTFAA 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++   L++         S  Q     AARE RY    E A T     I TAH  +D LET
Sbjct: 64  ELGVPLQVKRFDTHQYASFHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNLET 123

Query: 135 VYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++   R    +G +G+    DTI+        RP L+  R+ I  +   + + W ED S
Sbjct: 124 FFINLSRGSGLEGLLGIPEEKDTII--------RPLLQFSRQQIYEYAQAKRLKWREDSS 175

Query: 194 NTDDRFERVRVRR 206
           N  +++ R  +R 
Sbjct: 176 NETNKYVRNVIRH 188


>gi|257792629|ref|YP_003183235.1| tRNA(Ile)-lysidine synthetase [Eggerthella lenta DSM 2243]
 gi|257476526|gb|ACV56846.1| tRNA(Ile)-lysidine synthetase [Eggerthella lenta DSM 2243]
          Length = 371

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 37/207 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
           PA ++V  SGGSDS  L      +    + G++    + V+H LR E A ++ R+V+ + 
Sbjct: 28  PAMLMV--SGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLA 83

Query: 78  SRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISE-------HAKT-INATLIMTA 125
             L +        ++ +  +    + A AR  RY   +E       HA T +    I+TA
Sbjct: 84  ELLDVPLFSCEIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTA 143

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DD++E+ YMRS       G G  G     +   N  + RP L   RE++R+++ +R 
Sbjct: 144 HTADDRVESFYMRSI-----VGTGPGGF--RAMKYRNGPVVRPLLDASREELRAYIAERE 196

Query: 186 IS------------WCEDPSNTD-DRF 199
                         W ED +N   DRF
Sbjct: 197 RDGAPVACDDAGCLWREDATNAHTDRF 223


>gi|171911398|ref|ZP_02926868.1| tRNA(Ile)-lysidine synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 332

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 30/241 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLR 81
           LV VSGG DS+        +      G  K     ++H LR+   + + ++V D+     
Sbjct: 26  LVGVSGGRDSVA------LLHFLLLLGYRKLIVCHLNHQLRDAESNTDAQFVRDLA---- 75

Query: 82  IAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           IAH +        ++ + ++ +T L  A R+AR A   + A   +   +  AH  DD +E
Sbjct: 76  IAHGLGHEEITVDITAEAARTKTSLETAGRDARRAFFEQAAARHDCRNVFLAHHADDDVE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+     R    +  G+ GM         L I+RPFL   RE+I +++    +++ ED +
Sbjct: 136 TILHHLFRGSGLR--GIRGMDPISNSPGGLLITRPFLEITREEIDTYITTHGLAFREDST 193

Query: 194 N--------TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           N        T +R  R RV  F++++    +   +++F  L  +  + +      +LT H
Sbjct: 194 NAGSSLGAPTRNRI-RHRVLPFLKEMFQREVAGTLQRFARLAGRDEDFLQSATSAFLTDH 252

Query: 246 M 246
            
Sbjct: 253 Q 253


>gi|254374646|ref|ZP_04990127.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548]
 gi|151572365|gb|EDN38019.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548]
 gi|332678549|gb|AEE87678.1| tRNA(Ile)-lysidine synthetase [Francisella cf. novicida Fx1]
          Length = 398

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 16/193 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77
           P+HI++  SGG DS  +L+ +   L       I   AI ++H L R++ K ++ +   +C
Sbjct: 17  PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQIC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++ R     G GL+G+     Y    +  + RP L+  + +I  F    NIS+  D SN 
Sbjct: 129 QAIR-----GSGLAGLAGIPYYKELQHGGVLRPLLKYSKIEIEEFAKLNNISYIYDDSNE 183

Query: 196 DDRFERVRVRRFV 208
           D ++ R  +R  +
Sbjct: 184 DIKYRRNLIRNQI 196


>gi|139439222|ref|ZP_01772664.1| Hypothetical protein COLAER_01678 [Collinsella aerofaciens ATCC
           25986]
 gi|133775246|gb|EBA39066.1| Hypothetical protein COLAER_01678 [Collinsella aerofaciens ATCC
           25986]
          Length = 512

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 23/211 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETA 66
           R+    A +++ VSGG+DS  LL+   +   D   G+        +   + V+H LR  A
Sbjct: 21  RTRQQAAPVVLMVSGGADSTALLLMACTSKLDIQDGRGVAPIARERLHVLHVNHHLRGKA 80

Query: 67  KD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA--------LISEHAKTI 117
            D +  +V ++C++  +   V           + AAARE RYA        L ++     
Sbjct: 81  SDGDEAFVRELCAQYGLPLCVEHAYFDGESGNIEAAAREVRYAAARRYVRELCAQTGAPR 140

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I TAHT  D+ ET  M      A KG G +G+  +I    N+ + RP L     ++
Sbjct: 141 TAARICTAHTSSDRAETFLMN-----AIKGSGPAGL-SSIPRRRNI-VVRPLLDLTHGEL 193

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +L      W ED SN D  + R  VR  V
Sbjct: 194 VGYLQVHGQPWREDESNEDISYLRNYVRHRV 224


>gi|300727992|ref|ZP_07061370.1| tRNA(Ile)-lysidine synthetase [Prevotella bryantii B14]
 gi|299774834|gb|EFI71448.1| tRNA(Ile)-lysidine synthetase [Prevotella bryantii B14]
          Length = 452

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 163/385 (42%), Gaps = 73/385 (18%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61
           E V++F+     L      +VA+SGG+DS+ LL+ L  +             I   HC  
Sbjct: 5   EKVKYFINEHHLLDKDKKYIVALSGGADSVCLLLLLKKL----------HYQIEAAHCNF 54

Query: 62  -LR--ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHA 114
            LR  E+ +DE  +  ++C  L+I    + ++  +     +  +  AAR+ RY+      
Sbjct: 55  RLRGDESYRDE-EFCVNLCHALQIPLHRIHFETKEYAHLHKISIEMAARDLRYSYFENLR 113

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K I A  I  AH  +D +ET+ +   R     G G+ GM   +    N  I RP L  +R
Sbjct: 114 KDIQAEGICIAHHQEDCVETILINLIR-----GTGIQGMRGIL--PQNGHIIRPLLSIKR 166

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--DLHA-----LYLKMKKFQDLR 227
           +DI  +L +   ++  D +N  +  +R ++R  +  +   L+A     +Y   +   +  
Sbjct: 167 KDIEYYLQENRQNYVTDSTNLINDVQRNKIRLDIMPMLKQLNAGVVDNIYSTAQHLTEAN 226

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQD--------------ILNIDS--TLLFYLLRVS 271
             +N+A    I KYLT H  SI + ++D              I N  S   LL+Y+L  +
Sbjct: 227 CIINDA----IKKYLTQH--SIFSENEDFGLHSGYQKIRTESIENFSSPEYLLYYILS-N 279

Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY 331
               G QI    Y++     L  KSGK    +   ++IDR    L I R    L   I  
Sbjct: 280 YDFSGSQIE-QIYKN-----LHGKSGKVWKSNSYELLIDREN--LIIKRRTEILDKTIKI 331

Query: 332 PEETTVWDGRYQFQNLSDSLIQIGP 356
           PE      G Y F   S  +I   P
Sbjct: 332 PEP-----GTYVFDETSKVIINNIP 351


>gi|146317675|ref|YP_001197387.1| ATPase [Streptococcus suis 05ZYH33]
 gi|146319865|ref|YP_001199576.1| ATPase [Streptococcus suis 98HAH33]
 gi|253750936|ref|YP_003024077.1| PP-loop family protein [Streptococcus suis SC84]
 gi|253752835|ref|YP_003025975.1| PP-loop family protein [Streptococcus suis P1/7]
 gi|253754660|ref|YP_003027800.1| PP-loop family protein [Streptococcus suis BM407]
 gi|145688481|gb|ABP88987.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Streptococcus suis 05ZYH33]
 gi|145690671|gb|ABP91176.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Streptococcus suis 98HAH33]
 gi|251815225|emb|CAZ50789.1| PP-loop family protein [Streptococcus suis SC84]
 gi|251817124|emb|CAZ54845.1| PP-loop family protein [Streptococcus suis BM407]
 gi|251819080|emb|CAR44104.1| PP-loop family protein [Streptococcus suis P1/7]
 gi|292557477|gb|ADE30478.1| PP loop-containing protein [Streptococcus suis GZ1]
          Length = 422

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM L    H +   +    I+     ++H  RE +  E +Y+  +     
Sbjct: 21  VLVAVSGGLDSMNLF---HLLYECKQVLGIELGIAHINHGQREESVIEEKYLRQLAEESN 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +  ++    +     AAR+ RY   +   +    T ++TAH  DDQ ETV+MR  R
Sbjct: 78  VPFYLSYFEGVFSE----EAARKWRYGFFATIMEKEGYTALVTAHHADDQAETVFMRLIR 133

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LS +  T  +     I RP L  ++ D             ED SN D ++ R
Sbjct: 134 --GGRLRHLSAIQPTQPFATGELI-RPLLSFKKADFEKLF------HFEDCSNADFKYFR 184

Query: 202 VRVR 205
            RVR
Sbjct: 185 NRVR 188


>gi|254496251|ref|ZP_05109145.1| cell cycle protein MesJ [Legionella drancourtii LLAP12]
 gi|254354556|gb|EET13197.1| cell cycle protein MesJ [Legionella drancourtii LLAP12]
          Length = 443

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 133/318 (41%), Gaps = 39/318 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS  LL AL +  S R+    K  A+ ++H +   A    ++ +  C  L 
Sbjct: 23  LIVGFSGGLDSTVLLHALAAQPSLRT----KLVAVHINHGISSNASSWQQHCAQCCHDLG 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I     S +  +    +   AR ARYA+ +    T +  ++   H  DDQ ETV ++  R
Sbjct: 79  IQFITESVQFDR-SANIEEHARIARYAIFASLLTTKDCLIL--GHHQDDQAETVLLQLFR 135

Query: 142 DYAEKGMGLSGMCD-TILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G G+ G+   T +  L    + RPFL   R  +  +     + W ED SN +  +
Sbjct: 136 -----GAGIDGLAAMTAVSHLGAGTLVRPFLTYSRLQLAHYATVHQLIWIEDESNQEITY 190

Query: 200 ERVRVRR------------FVRDIDLHALYLKMKK--FQDLRVKVNNAVAMLIPKYLTVH 245
            R  +R+             V  I   AL+ +  K     L  +     + LI       
Sbjct: 191 SRNYLRQQIMPLLVEKWPGVVGTIARSALHCQQAKSNLDALATQDIEGGSELIT------ 244

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCV 302
           + S       +LN++   +  +LRV   +   Q+ LP   +  R+   +L+ ++     V
Sbjct: 245 LTSTSLCIDPLLNLNFARIANILRV--WLRNNQVQLPSTATFHRLINELLYARTDAAPAV 302

Query: 303 SIGRVVIDRRANFLWITR 320
           S G ++I R   +L++ R
Sbjct: 303 SWGDILIRRYQKYLYLDR 320


>gi|71894625|ref|YP_278733.1| hypothetical protein MS53_0615 [Mycoplasma synoviae 53]
          Length = 286

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCSR 79
           ++AVSGG+DSM LL             K K   I V H     R  +  +   V + C +
Sbjct: 1   MIAVSGGADSMFLL------------DKYKHKNIIVAHVNYNQRNDSNFDEELVRNYCEK 48

Query: 80  LRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             I   ++S        G     AR+ARY+   +  K  N   ++ AH   D LET YM+
Sbjct: 49  NNIKLEILSLNKQDFLKGNFQDWARKARYSFFEKVYKKHNCNKLLIAHHKLDFLETYYMQ 108

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197
            + +      G+     + ++D++++  RPFL +  ++ I  F  +  I + +D SN + 
Sbjct: 109 KESNKMNFFYGIKKR--SFIFDMHVY--RPFLYKYTKKQICKFCRKNKIPYRDDYSNFES 164

Query: 198 RFERVRVRR 206
           ++ R  VR+
Sbjct: 165 KYTRNIVRK 173


>gi|323126272|gb|ADX23569.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 428

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  LH    D    +I      ++H  R  ++ E  Y+    +   
Sbjct: 23  VLIAVSGGVDSMNLLHFLHLFQEDL---QISIGIAHINHKQRIESEIEEDYLRQWANN-- 77

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             HSV  + +         AAR+ RY    +  +    + ++TAH  DDQ ET+ MR  R
Sbjct: 78  --HSVPIYISHFEGIFSEKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETILMRLIR 135

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSG+     +  N  + RPFL   + D+       NI   ED SN +    R
Sbjct: 136 --GSRLRHLSGIKPVQPFG-NGQLIRPFLSFSKGDL------PNIFHFEDTSNEETTVFR 186

Query: 202 VRVR 205
            RVR
Sbjct: 187 NRVR 190


>gi|170078528|ref|YP_001735166.1| metallothionein [Synechococcus sp. PCC 7002]
 gi|169886197|gb|ACA99910.1| metallothionein [Synechococcus sp. PCC 7002]
          Length = 342

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVC 77
           A +++AVSGG DS    + L  ++ D    +    ++++ HC      DE    +V  + 
Sbjct: 24  AKLIMAVSGGQDS----VCLSRLMLD--LQRHWQWSLAIAHCHHGWPGDEEIAAHVQTLG 77

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           ++ ++   +    +S P+T    AAR  RY  ++  A+ ++   ++T HT  D+ ET+  
Sbjct: 78  AQWQLPFYLCRAVSSLPETE--NAARRWRYETLTHLAEQLDQAYVVTGHTQSDRAETLIY 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G+G   + +       + + RP L   R++   F  Q N+  C DP N   
Sbjct: 136 NLVRGAGTAGLG--SLTERRSLSNKVKLVRPLLTITRQETGEFCRQFNLLVCFDPFNQQM 193

Query: 198 RFERVRVRRFV 208
           RF+R ++R+ +
Sbjct: 194 RFKRNQIRQQI 204


>gi|94264675|ref|ZP_01288457.1| PP-loop [delta proteobacterium MLMS-1]
 gi|93454906|gb|EAT05150.1| PP-loop [delta proteobacterium MLMS-1]
          Length = 382

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 92/231 (39%), Gaps = 53/231 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVS G DSM LL AL ++    +      +A  +DH LR       + +  + +R  
Sbjct: 24  VLVAVSAGPDSMALLYALAALRGVAAMPAFSLAAAYIDHGLRPAESGREQELVAIAAR-- 81

Query: 82  IAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                ++W+  +             L  AARE RY  + E A  + A  +  AH  DDQ 
Sbjct: 82  --ELGITWRGGRVTAREYAARHGLSLEHAARELRYRCLQELAGELAANTLAVAHQADDQA 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--------------------------------- 159
           E + +R  R  A +  GLSGM  + L                                  
Sbjct: 140 EELLLRLLRGTARE--GLSGMAWSRLLADAGSGSAGPGIGGGADATFSKAEAVGAEPAAP 197

Query: 160 -----DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
                D  L + RP L   + +I S+L +R I   ED SN D RF R RVR
Sbjct: 198 RPAGVDNGLRLIRPLLAAPKAEILSYLARRGIVHAEDSSNQDRRFLRNRVR 248


>gi|261822581|ref|YP_003260687.1| tRNA(Ile)-lysidine synthetase [Pectobacterium wasabiae WPP163]
 gi|261606594|gb|ACX89080.1| tRNA(Ile)-lysidine synthetase [Pectobacterium wasabiae WPP163]
          Length = 439

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A SGG DS    + LH +++ R    +   A  + H L   A     +    C   +
Sbjct: 24  ILLAYSGGMDSS---VLLHLLVAARQRSGLAIRAAYIHHGLNPLADSWAEHCRQQCEHWQ 80

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  + ++        G+ AAAR ARY  +  H +      ++TA   DDQ ET  +  +R
Sbjct: 81  VPFASLAVTVEAQNGGIEAAARTARYRALQAHLQ--EGETLLTAQHLDDQSETFLLALKR 138

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+       T+ +     + RP L   R  + ++  +  + W ED SN D+RF+R
Sbjct: 139 GSGPAGLSAMAAQSTLGHYR---LIRPLLGFSRLQLEAYAQRHQLHWIEDDSNQDERFDR 195

Query: 202 VRVRRFV 208
             +RR +
Sbjct: 196 NFLRRQI 202


>gi|326384091|ref|ZP_08205774.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326197251|gb|EGD54442.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 317

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 82/206 (39%), Gaps = 24/206 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +VR F    +    + VA+SGG+DS+ L  A           ++   A+ VDH L+  
Sbjct: 10  VGAVRGFADRFLDDGPVCVALSGGADSLALTAAAVRA-------RLVVHAVVVDHGLQAG 62

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + +     +           V + +      G  AAAR ARY  +           ++  
Sbjct: 63  SAEVAARAAAAARESGATAEVRTVEVGS-AGGPEAAARTARYDALR---AARGGRPVLLG 118

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS---RPFLRCRREDIRSFLL 182
           HT DDQ ETV +   R    +   LSGM +        W +   RP L  RR   R    
Sbjct: 119 HTLDDQAETVLLGLGRGSGARS--LSGMSE--------WSAPWGRPLLGLRRAQTREACA 168

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208
              +   +DP N D  F RVRVR  V
Sbjct: 169 DWGLPIWDDPHNVDPGFTRVRVRSEV 194


>gi|329766712|ref|ZP_08258255.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329136967|gb|EGG41260.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 304

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 21/226 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG DS+ LL  ++ + S  +F   +  AI++D  +     + +  V + C++L 
Sbjct: 50  VAVAVSGGKDSLALLNVINQMKSTHNF---RIKAITIDEGIPGYRNEALEIVQEFCAKLN 106

Query: 82  IAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           + H V S+K                 +T   +     R   I   A  I A +I T H  
Sbjct: 107 VEHKVFSYKELFDLTLDEALNLRGNEKTSSCSICGTLRRRAIDHAANDIGADVIATGHNL 166

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD L+T  +        K     G  D    D  L   +PF      +I  +    NI +
Sbjct: 167 DDTLQTFVINMLSGDTNK----IGWMDPDTSDNTLRKIKPFCEIYESEIVFYAFTNNIPF 222

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +P    +   R  +R F+  ++     +K   +Q + +KV+  V
Sbjct: 223 QTEPCPHMNEGIRTEIREFLNSLEGKHSGIKNNLYQSI-IKVSQIV 267


>gi|206896469|ref|YP_002247248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739086|gb|ACI18164.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 314

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRY 72
            +V    I++AVSGG DSM   + LH  L+ R    +  + +  +++H +R  A ++V+ 
Sbjct: 15  EIVGTQGIVLAVSGGKDSM---VLLH--LAKRFEHHLPNNVVVATLNHGIRRDALEDVKL 69

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V      L     V+    S          R  R A + +    + A  I TAH  DD +
Sbjct: 70  VVQCAQNLEFP--VIVGSLSPKSFCDENTLRSHRRAFLLDVMDQVKADRIWTAHHADDAV 127

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +R  R     G GL G     LYD + W ++P L    EDI  F  +  + + ED 
Sbjct: 128 ETMVLRLGR-----GAGLMGATSPKLYD-DPW-AKPLLTVFSEDIEEFRRRFGVPFREDS 180

Query: 193 SNTDDRFERVRVR 205
           +N    +ER ++R
Sbjct: 181 TNLLTDYERNKIR 193


>gi|188533056|ref|YP_001906853.1| tRNA(Ile)-lysidine synthase [Erwinia tasmaniensis Et1/99]
 gi|188028098|emb|CAO95955.1| tRNA(Ile)-lysidine synthase [Erwinia tasmaniensis Et1/99]
          Length = 433

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++ +  +SL     +L+A SGG DS  LL  L  +   R   +++  A+ + H L   
Sbjct: 1   MSAIAYLEQSLAAEHAVLLAYSGGLDSSVLLHQLVQLRERRP--QLRLRAVHIHHGLNPL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A     +    C+R ++   V+  +    + G+ AAAR+ARY  +  HA+      ++TA
Sbjct: 59  ADGWAAHCQQQCARWQVPLMVIRVQVDAREGGIEAAARQARYRAL--HAQLEAGETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+             +L   RP L   R+ +  +  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGDRRHL---RPLLAQSRQQLECWAHRHQ 173

Query: 186 ISWCEDPSNTDDRFER 201
           + W ED SN D R++R
Sbjct: 174 LDWIEDDSNQDARYDR 189


>gi|270289038|ref|ZP_06195340.1| MesJ/Ycf62 family protein [Chlamydia muridarum Weiss]
          Length = 283

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 18/225 (8%)

Query: 46  RSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAR 103
           RS G I F+A+ VD+  RET+  E   ++ +C R +I   +   + + P   + +   AR
Sbjct: 5   RSRG-ISFTAVHVDYGWRETSYQEACDLASLCEREQIPFILDRQEVANPMDFSDIENIAR 63

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLN 162
           + RY L     K      +   H  DDQ ET+    +R +    +G L GM     Y   
Sbjct: 64  QYRYELFYRLCKERLFAGVFLGHHADDQAETIL---KRVFEGAHLGNLKGMARYGTYK-G 119

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR---------FVRDIDL 213
           + + RP L   +  I   L    I + +D +N D+RF R R+R          F ++I  
Sbjct: 120 ITLLRPLLHITKRQIVEALDNYRIEYVQDATNADERFLRARMREQLFPYLQEIFGKNIRQ 179

Query: 214 HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             L+L  +   +LR  ++   A  + + +   +   + + Q++L 
Sbjct: 180 PLLFLA-EDSAELREYLDQQAAPFLSQVIDNEIGQFLPVGQELLQ 223


>gi|228476807|ref|ZP_04061455.1| tRNA(Ile)-lysidine synthase [Streptococcus salivarius SK126]
 gi|228251544|gb|EEK10681.1| tRNA(Ile)-lysidine synthase [Streptococcus salivarius SK126]
          Length = 421

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 20/186 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+       +
Sbjct: 21  ILVAVSGGADSMSLLHFLYNHQKDLD---IQLGIAHVNHKQRQESEHEEAYLRHWAKEHK 77

Query: 82  I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +   +S  S K S+       AAR  RY       K    + ++TAH  DDQ ET++MR 
Sbjct: 78  VPFHYSAFSGKFSE------NAARTFRYEFFKRVMKDYEYSALVTAHHADDQAETIFMRL 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   L+G+     +     I RPFL   ++ +            ED SN    +
Sbjct: 132 LR--GSRLRHLTGISAIRPFGTG-QIIRPFLHLTKDQLPVTF------HFEDRSNMSLAY 182

Query: 200 ERVRVR 205
            R R+R
Sbjct: 183 LRNRIR 188


>gi|167570470|ref|ZP_02363344.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis C6786]
          Length = 491

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 130/312 (41%), Gaps = 47/312 (15%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++++   + +L + A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAIGVALSALPHDARIALAYSGGLDSTVLLHA-----AARIAGAERCVALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           A   + + ++    L +    AH  V   + +   G+ A+AR+ARY  +        A  
Sbjct: 69  ADAWLAHCAETADALGVRFDAAHVDVPRASGQ---GVEASARDARYRALETMCARHGARA 125

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDI 177
           +  A   DDQ ETV ++  R     G G++G+            ++   RP L   R  +
Sbjct: 126 LWLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPQYRPASTDVVRMRPLLHLLRAQL 180

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL--RVKVNNAVA 235
             +  Q  + W +D SN + R+ R  +R  V    L AL      F+D   R   + A A
Sbjct: 181 ERYAQQHALRWIDDESNANTRYARNALRVDV----LPALAPHFPGFRDALGRTAQHAAAA 236

Query: 236 M-LIPKYLTVHMRSII-----AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGY 284
             L+     + +R++      A+S+D L        + LL Y +R         + LPG 
Sbjct: 237 QRLLDDLAAIDLRAVAREDGRALSRDALVALDDERGANLLRYWMR--------SLGLPGA 288

Query: 285 RSMERVMLFLKS 296
            S  R+   +K 
Sbjct: 289 -SAARLAEMMKQ 299


>gi|332198875|gb|EGJ12957.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA47368]
          Length = 412

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  TELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|224373408|ref|YP_002607780.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Nautilia
           profundicola AmH]
 gi|223589428|gb|ACM93164.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Nautilia
           profundicola AmH]
          Length = 317

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 29/194 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS---- 78
           L+A S G DS  L   L           I F    V++  R+T+ +EV Y  ++      
Sbjct: 8   LLAFSAGVDSTALFFWLIE-------NNIPFDIAIVNYHTRKTSNEEVEYAKELAETYNK 60

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++ I   V+      P+      AR  RY    E  K      ++TAH  +D+ E   M+
Sbjct: 61  KIYIKDCVL------PKFS-EKEARICRYVFFEEIIKKHGYHTLITAHQLNDRFEWFLMQ 113

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                  KG GL  +     ++   +  I RPF    R +I +FL +R I +  D SN D
Sbjct: 114 FS-----KGAGLKELIAMGEWEEREFYKIYRPFYNISRNEIVTFLNERGIKYYTDESNFD 168

Query: 197 DRFERVRVRRFVRD 210
            +++    R F+RD
Sbjct: 169 KKYK----RNFIRD 178


>gi|238882936|gb|EEQ46574.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 483

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 90/233 (38%), Gaps = 36/233 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VA+SGG DSM L   L       S  K +  AI++DH  R  A  E   V +   
Sbjct: 21  PKKVAVALSGGPDSMLLTWLL-------SQCKFEIYAITIDHKYRPEASREALSVYERVK 73

Query: 79  RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              + H + S       +          ARE RY  +++     +  ++   H  DDQLE
Sbjct: 74  NWNLNHIIKSLDYPAGVDPTKLNNFEEIAREKRYEAMAQVCYDKDIPVLFLGHHRDDQLE 133

Query: 134 TVYMRSQRDYAEKGMGLSGM--------------CDTILYDLN-LWISRPFLRCRREDIR 178
           T   R Q +      GL+G                 T     N + I RPF    ++DI 
Sbjct: 134 TFIQRLQGN--SSIFGLAGTHKVSPLPISKDLSPTSTFFNQANQVRILRPFWDYDKQDIL 191

Query: 179 SFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDI------DLHALYLKMKKFQ 224
                 NI++  DP+N D    R   +R  + DI        H+ YL + K Q
Sbjct: 192 ETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDIIPAKNNQSHSPYLLIDKSQ 244


>gi|225181433|ref|ZP_03734876.1| tRNA(Ile)-lysidine synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167831|gb|EEG76639.1| tRNA(Ile)-lysidine synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 474

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVSGG DS+ LL  L  + +    G I      + H LR  +  E   V  +   L 
Sbjct: 21  VVVAVSGGPDSLMLLHVLWELSA--KLG-ITLHVAHIHHGLRAESDQEAVAVKKMALGLG 77

Query: 82  IAHSV--VSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +  SV  V+  N + +TG  L A AR+ RY  +   A  + A  I TAH  DD +ET+ +
Sbjct: 78  LPVSVSRVNVGNRRQKTGTSLQATARQVRYGALERIAHRVGAACIATAHHRDDLVETLLL 137

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           R          GL G     +    L + RP     R++I ++     +    DP+N
Sbjct: 138 RLLSGSGLD--GLKGFPMQRVLPSGLSVVRPLYDVTRKEIEAYCRTYKLKPLHDPTN 192


>gi|118497835|ref|YP_898885.1| ATPase [Francisella tularensis subsp. novicida U112]
 gi|194323808|ref|ZP_03057584.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           tularensis subsp. novicida FTE]
 gi|166988059|sp|A0Q7B6|TILS_FRATN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|118423741|gb|ABK90131.1| predicted ATPase of the PP-loop superfamily [Francisella novicida
           U112]
 gi|194322172|gb|EDX19654.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           tularensis subsp. novicida FTE]
          Length = 398

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 16/193 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77
           P+HI++  SGG DS  +L+ +   L       I   AI ++H L R++ K ++ +    C
Sbjct: 17  PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            R  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQPYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++ R     G GL+G+     Y    +  + RP L+  + +I  F    NIS+  D SN 
Sbjct: 129 QAIR-----GSGLAGLAGIPHYKELHHGGVLRPLLKYSKIEIEEFAKLNNISYIYDDSNE 183

Query: 196 DDRFERVRVRRFV 208
           D ++ R  +R  +
Sbjct: 184 DIKYRRNLIRNQI 196


>gi|167933096|ref|ZP_02520183.1| putative cell-cycle protein [candidate division TM7 single-cell
           isolate TM7b]
          Length = 228

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 23/194 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++ A+SGG DS+ LL     +LS R +         V+H +R  + ++  +V  + ++  
Sbjct: 2   LIAAISGGVDSIVLL----DLLSKR-YKTSDIIVAHVNHGIRVESSEDADFVRKMSAKYG 56

Query: 82  IAHSVVSWKNSKPQTGLMAA---AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           + +  +         GL A+   AR+ RY  + + +K  NA  I+TAH  DD +ET+ + 
Sbjct: 57  MRYRQID-----LNLGLHASEEVARDQRYTFLRKLSKEFNAK-IVTAHHADDIIETIAIN 110

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +G+ +    D         I RP     + D+  +  +  + W ED +N+ D 
Sbjct: 111 LVRGTGWRGLAVMSAKD---------IYRPLTCFYKNDLLLYAKKNGLEWREDSTNSSDL 161

Query: 199 FERVRVRRFVRDID 212
           + R R+R+ ++ ++
Sbjct: 162 YLRNRLRKRIKTLN 175


>gi|85059904|ref|YP_455606.1| cell cycle protein [Sodalis glossinidius str. 'morsitans']
 gi|84780424|dbj|BAE75201.1| cell cycle protein [Sodalis glossinidius str. 'morsitans']
          Length = 542

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 10/201 (4%)

Query: 6   IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISVDH 60
           ++ +R  V + V P   +L+A SGG DS  LL AL ++           +    A+ V H
Sbjct: 9   VQVLRRHVAARVAPYRALLLAFSGGLDSTVLLDALAALRDGDGLSGGDGAQTLRAVHVHH 68

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A +   + +  C R  +A +VV         G+ AAAR ARY  ++  A      
Sbjct: 69  ALSRHADEWAAHCAQECRRRDVAFTVVHVVVDATSEGIEAAARGARYGALA--AALTQDE 126

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TA   DDQ ET+ +  +R     G  L+ M     Y L   + RP L   R ++ ++
Sbjct: 127 VLITAQHQDDQAETLLLALKRGSGPAG--LASMAVDAPY-LGHRLVRPLLDFSRGELEAY 183

Query: 181 LLQRNISWCEDPSNTDDRFER 201
              R + W ED SNTD RF+R
Sbjct: 184 AQARGLHWTEDDSNTDLRFDR 204


>gi|167957510|ref|ZP_02544584.1| putative cell-cycle protein [candidate division TM7 single-cell
           isolate TM7c]
          Length = 275

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 23/194 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++ A+SGG DS+ LL     +LS R +         V+H +R  + ++  +V  + ++  
Sbjct: 2   LIAAISGGVDSIVLL----DLLSKR-YKTSDIIVAHVNHGIRVESSEDADFVRKMSAKYG 56

Query: 82  IAHSVVSWKNSKPQTGLMAA---AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           + +  +         GL A+   AR+ RY  + + +K  NA  I+TAH  DD +ET+ + 
Sbjct: 57  MRYRQID-----LNLGLHASEEVARDQRYTFLRKLSKEFNAK-IVTAHHADDIIETIAIN 110

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +G+ +    D         I RP     + D+  +  +  + W ED +N+ D 
Sbjct: 111 LVRGTGWRGLAVMSAKD---------IYRPLTCFYKNDLLLYAKKNGLEWREDSTNSSDL 161

Query: 199 FERVRVRRFVRDID 212
           + R R+R+ ++ ++
Sbjct: 162 YLRNRLRKRIKTLN 175


>gi|254228405|ref|ZP_04921831.1| PP-loop family [Vibrio sp. Ex25]
 gi|151938993|gb|EDN57825.1| PP-loop family [Vibrio sp. Ex25]
          Length = 449

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS  LL  L       S   I+  A+ V H L   A D          ++ 
Sbjct: 35  VVLAFSGGVDSRLLLELLSRYQQAHS---IECHAVYVHHGLSSNADDWADKCLLWAKQVG 91

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I+ S+  VS   S  ++ +   AREARY  ++++ +     +++T    DDQLET  +  
Sbjct: 92  ISCSIELVSLDISNGES-IELLAREARYQALTKYIQ--EGDILLTGQHADDQLETFLLAL 148

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M +++ +     + RP L  +R+ I     +  + W ED SN D R+
Sbjct: 149 KRGSGPKG--LSSMAESMPFSSGSLV-RPLLTIKRKTIEDAATKLGLEWVEDESNQDTRY 205

Query: 200 ERVRVRRFV 208
           +R  +R  V
Sbjct: 206 DRNFLRHCV 214


>gi|160943996|ref|ZP_02091226.1| hypothetical protein FAEPRAM212_01497 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444672|gb|EDP21676.1| hypothetical protein FAEPRAM212_01497 [Faecalibacterium prausnitzii
           M21/2]
          Length = 478

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 11  FFVR-SLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ET 65
           F +R  L+ P    H+  AVSGG+DSM LL+ L  +     FG    SA  V+H LR ++
Sbjct: 12  FCIREGLLQPGASQHLAAAVSGGADSMALLLLLRQLQP--RFG-YTLSACHVNHGLRGQS 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN--SKPQTGLMAAAREARYALISE-HAKTINATLI 122
           A  +  +V   C+RL +   V       S P       AR  RY   ++   + I+A  I
Sbjct: 69  ADRDEAFVRAECARLGVPLRVFHAAELASPPAHAGEDWARRLRYTAFAQLQGQGIDA--I 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            TAHT +DQ ET+ +R  R     G GL G    I      ++ RP L   R +  +   
Sbjct: 127 ATAHTANDQAETLLLRLAR-----GTGLHGA-GGIRPRRGCYL-RPLLCLSRAETEAVCR 179

Query: 183 QRNISWCEDPSNTDDRFERVRVR 205
                W  D +N  D + R R+R
Sbjct: 180 AAGQPWVTDETNDTDAYARNRLR 202


>gi|325698021|gb|EGD39902.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK160]
          Length = 425

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +L+AVSGG DSM LL  L  + S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IDSQKELD-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +  +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFSEN----AARQFRYDFFEKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP     + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLFTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I   ED SN  + + R R+R
Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189


>gi|297192940|ref|ZP_06910338.1| tRNA(Ile)-lysidine synthetase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722655|gb|EDY66563.1| tRNA(Ile)-lysidine synthetase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 370

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 15/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL      R    ++   I+VDH L++ +       ++V +RL 
Sbjct: 71  VLVACSGGADSMALASAL--AFEARKL-SVRAGGITVDHGLQDGSG---MRAAEVVARLT 124

Query: 82  IAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             H      ++ +  + + G  AAAR+ARYA + + A+   A  ++  HT DDQ ETV +
Sbjct: 125 AMHLDPVEAIAVRVGR-EGGPEAAARDARYAALDDAAERHGAAAVLLGHTRDDQAETVLL 183

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +   LSGM    +        RPFL   R+  R   + +++   +DP N D 
Sbjct: 184 GLARGSGIR--SLSGMA--AVSGTAGRYRRPFLHIDRQTARKACMVQSLPVWDDPHNADP 239

Query: 198 RFERVRVR 205
            + R R+R
Sbjct: 240 AYTRSRLR 247


>gi|168484297|ref|ZP_02709249.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172042410|gb|EDT50456.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 425

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  TELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|322377896|ref|ZP_08052384.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M334]
 gi|321281072|gb|EFX58084.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M334]
          Length = 425

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 20/197 (10%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           F++   +  H  +++A+SGG DSM L   L +   +    +I+     V+H  R  +  E
Sbjct: 10  FLKRGYFKKHTKVVLALSGGLDSMFLFKVLSTYQEEL---EIELILAHVNHKQRVESDWE 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + +  + +   +   + ++     +    A AR+ RY    E  K   AT ++TAH  D
Sbjct: 67  EKELRKLAAEAELPIYISNFSGEFSE----ARARDFRYDFFQEVMKKTGATALVTAHHAD 122

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DQ+ET+ MR  R    +   LSG+ +  ++ D+ +   RPFL+  ++D  S      I  
Sbjct: 123 DQVETILMRLIR--GTRLRYLSGIKEKQVVGDIEMI--RPFLQFHKKDFPS------IFH 172

Query: 189 CEDPSNTDDRFERVRVR 205
            ED SN ++ + R R+R
Sbjct: 173 FEDISNQENHYFRNRIR 189


>gi|270264801|ref|ZP_06193065.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera 4Rx13]
 gi|270041099|gb|EFA14199.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera 4Rx13]
          Length = 441

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 85/192 (44%), Gaps = 15/192 (7%)

Query: 14  RSLVYPAHILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           R L    H+LVA SGG DS   + LL+ L      R +  ++  A+ V H L   A + V
Sbjct: 17  RQLGTKRHLLVAFSGGLDSSVLLHLLVGLR-----RQWPDLQLRAVHVHHGLSAFADEWV 71

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFD 129
            +    C+  ++   V   ++ +    L      AR A  S  A T+ A  +++TA   D
Sbjct: 72  AHCQRQCAAWQLPLVV---QHVQVDGRLGGIEAAARAARYSAFAATLAADEVLLTAQHLD 128

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET  +  +R     G  LS M        N  + RP L   R  +  +  Q  ++W 
Sbjct: 129 DQCETFLLALKRGSGPAG--LSAMAAQASLGSNP-LLRPLLGMSRLQLEDYAQQHQLTWI 185

Query: 190 EDPSNTDDRFER 201
           ED SN D RF+R
Sbjct: 186 EDDSNQDPRFDR 197


>gi|259907561|ref|YP_002647917.1| tRNA(Ile)-lysidine synthase [Erwinia pyrifoliae Ep1/96]
 gi|224963183|emb|CAX54667.1| tRNA(Ile)-lysidine synthase [Erwinia pyrifoliae Ep1/96]
 gi|283477401|emb|CAY73317.1| cell cycle protein [Erwinia pyrifoliae DSM 12163]
          Length = 433

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++     +L     +L+A SGG DS  LL  L  +   R    ++  A+ + H L + 
Sbjct: 1   MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQRPH--LQLRAVHIHHGLSQL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A D   +    C R ++   VV  +      G+ AAAR+ARY  + EH   I    ++TA
Sbjct: 59  ADDWAAHCQQQCDRWQVPLVVVRVQVDARDGGIEAAARQARYRALREH--LIAGETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+             +L   RP L   R+ + S+  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGEHRHL---RPLLTQSRQQLESWAQRYR 173

Query: 186 ISWCEDPSNTDDRFER 201
           ++W ED SN D R++R
Sbjct: 174 LNWIEDDSNQDARYDR 189


>gi|187777491|ref|ZP_02993964.1| hypothetical protein CLOSPO_01066 [Clostridium sporogenes ATCC
           15579]
 gi|187774419|gb|EDU38221.1| hypothetical protein CLOSPO_01066 [Clostridium sporogenes ATCC
           15579]
          Length = 468

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 15/190 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC-- 77
           I+V VSGG DSM LL  L  +  +     I  + I+  H +R  E+  DE +YV + C  
Sbjct: 21  IIVGVSGGPDSMCLLHMLCLLKDELRIKDIYVAHIN--HGVRGAESDADE-KYVENFCYM 77

Query: 78  SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + L      +       + G+   +A REARY   +   K + A  I TAH  +DQ ETV
Sbjct: 78  NNLGFFSKTIDMNKMAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G GL G+         ++I RP +   RE+I  +  +  ++   D +N 
Sbjct: 138 LMRIMR-----GTGLQGLIGINPIRDGVYI-RPLINVLRENIEYYCEKYKLNPRIDKTNL 191

Query: 196 DDRFERVRVR 205
              + R ++R
Sbjct: 192 QSIYTRNKIR 201


>gi|332198668|gb|EGJ12751.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA41317]
          Length = 425

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFKKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|307153268|ref|YP_003888652.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7822]
 gi|306983496|gb|ADN15377.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7822]
          Length = 322

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 19/189 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSD---V 76
           +LVAVSGG DS+ LL  L  + S   +   + +    DH     A   D V+ ++    +
Sbjct: 26  LLVAVSGGQDSLCLLKLLVDLQSKWEW---ELAIAHCDHGWPTDAGMSDHVQQIAQSWGI 82

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
              L+ AH +   K ++      AAAR+ RY  + E A     +L++TAHT  D+ ET  
Sbjct: 83  PYYLKTAHHL---KETE------AAARKWRYQALIEIATEQGFSLVVTAHTKTDRAETFL 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R     G  LS +        N+W+ RP L   R +   F  Q N+S  ED  N +
Sbjct: 134 YNLIRGAGTDG--LSSLTWVRSLSENIWLVRPLLEISRSETYQFCQQFNLSIWEDILNQN 191

Query: 197 DRFERVRVR 205
            ++ R R+R
Sbjct: 192 LKYARNRIR 200


>gi|222823298|ref|YP_002574871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           lari RM2100]
 gi|222538519|gb|ACM63620.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           lari RM2100]
          Length = 318

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 16/195 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            SL+     L+A S GSDS  L   L +         I F    +++  R+ +  E +  
Sbjct: 4   ESLLKNKKNLLAFSHGSDSSALFFMLLN-------KNIDFDLALINYKTRKNSDKEEQSA 56

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++  +      +     +K +    A AR  RY    E  K      ++ AH  +D+ E
Sbjct: 57  KELAKKYN--KKIFVKIATKIEKNFEANARAVRYEFFDEICKKYKYENLILAHNLNDKFE 114

Query: 134 TVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
              M+       KG G   +     +    N  I RP +   +++I +FL + NI +  D
Sbjct: 115 WFLMQFS-----KGAGFVELLGFKAVEKKENFIIVRPLINTSKDEILNFLKKENIKYFYD 169

Query: 192 PSNTDDRFERVRVRR 206
            SN D+++ R  +R+
Sbjct: 170 ESNDDEKYFRNFIRK 184


>gi|154151660|ref|YP_001405278.1| PP-loop domain-containing protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000212|gb|ABS56635.1| PP-loop domain protein [Methanoregula boonei 6A8]
          Length = 315

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 13/137 (9%)

Query: 16  LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           L++P   I V +SGG DS  LL+ L  +L      ++K  AI+VD  +     D ++   
Sbjct: 53  LIHPGDRIAVGLSGGKDSTALLVILSRLLP--GLPEVKIVAITVDEGIAGYRSDTIKSAE 110

Query: 75  DVCSRLRIAHSVVSWKN---SKPQTGLMAAAREA-------RYALISEHAKTINATLIMT 124
            +  RL + H +VS+++   S   T L+   ++A       R   + + A+   AT+I T
Sbjct: 111 ALTRRLGVEHRMVSFRDLIGSDLDTLLLGRGKQACTICGILRKKALMDAARDSGATVIAT 170

Query: 125 AHTFDDQLETVYMRSQR 141
            H  DD+ ++V M + R
Sbjct: 171 GHNLDDEAQSVLMNALR 187


>gi|332071333|gb|EGI81828.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA17545]
          Length = 412

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|254457083|ref|ZP_05070511.1| tRNA(Ile)-lysidine synthetase [Campylobacterales bacterium GD 1]
 gi|207085875|gb|EDZ63159.1| tRNA(Ile)-lysidine synthetase [Campylobacterales bacterium GD 1]
          Length = 333

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 20/187 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG+DS  L   L           IKF    V++  R  +  EV Y  ++ S+  +
Sbjct: 16  LLAFSGGADSTALFFLLLK-------QNIKFDIAIVNYNERVQSIKEVEYAKELASKYNL 68

Query: 83  A-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             H++VS K SK      + ARE RY    +         ++TAH   D+ E + M+   
Sbjct: 69  ECHTLVSPKISK---NFESKAREIRYDFFEKLISEYGYDNLLTAHHLGDRFEWMLMQFC- 124

Query: 142 DYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
               KG G   ++GM      +    + RP L   ++++  +L + NI + ED +N ++ 
Sbjct: 125 ----KGAGCAEIAGMQKVQQREFYTLV-RPLLHLDKQELYEYLGRDNIKYFEDETNLNET 179

Query: 199 FERVRVR 205
            +R   R
Sbjct: 180 IKRNSFR 186


>gi|317502958|ref|ZP_07961048.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella salivae DSM 15606]
 gi|315665924|gb|EFV05501.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella salivae DSM 15606]
          Length = 448

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 157/374 (41%), Gaps = 53/374 (14%)

Query: 1   MFLSPIESVRFFV--RSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  S  + V+ F+    L+ P    L+A+SGG DS+ LL         R   ++ +   +
Sbjct: 1   MLSSFAQKVKAFIAENQLLQPESTYLLALSGGCDSVALL---------RIMIELNYHVAA 51

Query: 58  VDHC---LR--ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYA 108
           V HC   LR  E+ +DE+ +  ++C  L++    V +      S     +  AARE RY 
Sbjct: 52  V-HCNFQLRNAESKRDEM-FCEELCRSLKVPFHRVYFDTKAYASLHHVSIEMAARELRYD 109

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
              +  K I+A  I+ AH  DD +ET  +   R     G G+ G+    +   N  I RP
Sbjct: 110 YFEKLRKDISADDILVAHHQDDNIETALLNLIR-----GTGIQGLLG--MKPKNGHIIRP 162

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSN-------TDDRFERVRVRRFVRDIDLHALYLKMK 221
            L   R++I  +L   +  +  D SN          R E + + + +       +   +K
Sbjct: 163 LLSVSRKEIEQYLSSIHQDYVTDSSNLVADVMRNKIRLEVIPLLKTLNPSVSDNISTTIK 222

Query: 222 KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN--IDSTLLFYLLRVSAAICGGQI 279
              +    +N+A+     + ++V+ ++ IAI+   L   +    + Y +  + +    QI
Sbjct: 223 HLNEASNVLNSALKDGQKRVVSVYKQNQIAINIKALQKEVSPEYILYSVLSNYSFSSAQI 282

Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT--LILYPEETT- 336
                       L   +GKR       +V DR    +    A R  PT  ++  PEE   
Sbjct: 283 ENIAQS------LNASTGKRWYSKTHELVKDRETLLI----ATRTQPTTKVLRVPEEGLF 332

Query: 337 VWDGRYQFQ-NLSD 349
           VW+   +F+ NLS+
Sbjct: 333 VWNEHIKFKINLSE 346


>gi|167754461|ref|ZP_02426588.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216]
 gi|167659086|gb|EDS03216.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216]
          Length = 448

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 85/196 (43%), Gaps = 33/196 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCS 78
           IL+ VSGG DSM +L    S+     +       + V HC   LR    +E     +   
Sbjct: 23  ILLTVSGGVDSMVML----SLFVRSGY------RVGVAHCNFQLRGVESEE----DEELV 68

Query: 79  RLRIAHSVVSWKNSK-------PQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129
           R       V W N +        +TG  +  AAR  RYA   E ++    T++  AH  D
Sbjct: 69  RREAEKYGVPWYNKRFDTKGEMERTGESMEMAARRLRYAWFDELSREHGYTVVAIAHHID 128

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET ++   R     G GL G+     +   L   RP +   R+DI  + + ++I + 
Sbjct: 129 DSIETFFINLLR-----GTGLRGLTGITTHAGKL--IRPLMFASRKDILEYAVAQHIPYR 181

Query: 190 EDPSNTDDRFERVRVR 205
           ED SN   ++ R ++R
Sbjct: 182 EDSSNRSTKYLRNKIR 197


>gi|310764931|gb|ADP09881.1| tRNA(Ile)-lysidine synthase [Erwinia sp. Ejp617]
          Length = 433

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++     +L     +L+A SGG DS  LL  L  +   R    ++  A+ + H L + 
Sbjct: 1   MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQRPH--LQLRAVHIHHGLSQL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A D   +    C R ++   VV  +      G+ AAAR+ARY  + EH   I    ++TA
Sbjct: 59  ADDWAAHCQQQCDRWQVPLVVVRVQVDARDGGIEAAARQARYRALREH--LIAGETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+             +L   RP L   R+ + S+  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGEHRHL---RPLLTQSRQQLESWAQRYR 173

Query: 186 ISWCEDPSNTDDRFER 201
           ++W ED SN D R++R
Sbjct: 174 LNWIEDDSNQDARYDR 189


>gi|168493989|ref|ZP_02718132.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575851|gb|EDT96379.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 425

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|148984555|ref|ZP_01817843.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|147923332|gb|EDK74446.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|301799160|emb|CBW31672.1| putative ATP-binding PP-loop family protein [Streptococcus
           pneumoniae OXC141]
          Length = 425

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|330444537|ref|YP_004377523.1| PP-loop type ATPase [Chlamydophila pecorum E58]
 gi|328807647|gb|AEB41820.1| PP-loop type ATPase [Chlamydophila pecorum E58]
          Length = 247

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA+SGG DS+ LL+ L ++ S R F ++   A+++       A+    Y+  +C RL+
Sbjct: 36  IIVALSGGKDSLSLLLMLKAI-SGRGFPELDLHAVNISGKYSCGAEVNTHYLIKICDRLQ 94

Query: 82  IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I   S+VS     P+T    +  +AR  L+ + AK I AT I   H  DD ++T  M   
Sbjct: 95  IPFTSLVS--PYAPETPECYSCSQARRRLLFQAAKEIGATAIAFGHHRDDLVQTTLMNLL 152

Query: 141 RDYAEKGM 148
                 GM
Sbjct: 153 HKAEFSGM 160


>gi|289642580|ref|ZP_06474722.1| hypoxanthine phosphoribosyltransferase [Frankia symbiont of Datisca
           glomerata]
 gi|289507575|gb|EFD28532.1| hypoxanthine phosphoribosyltransferase [Frankia symbiont of Datisca
           glomerata]
          Length = 620

 Score = 57.0 bits (136), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A  + A+ ++  HT DDQ ETV +R  R    +   L+GM       L+  I RP L 
Sbjct: 122 DAAGQLRASALLLGHTLDDQAETVLLRLARGSGTR--SLAGMP-----RLDGVIRRPLLD 174

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            RR   R   L   ++  +DP+N D+ F R RVR  V
Sbjct: 175 VRRSATRDACLAEGLTPWDDPTNADEAFARARVRHRV 211


>gi|148988915|ref|ZP_01820330.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP6-BS73]
 gi|147925726|gb|EDK76802.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP6-BS73]
          Length = 425

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|225853622|ref|YP_002735134.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae JJA]
 gi|254789051|sp|C1CH91|TILS_STRZJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225724064|gb|ACO19917.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae JJA]
 gi|332199078|gb|EGJ13159.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA47901]
          Length = 425

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|149020169|ref|ZP_01835143.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP23-BS72]
 gi|147930847|gb|EDK81828.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP23-BS72]
          Length = 425

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|309389977|gb|ADO77857.1| tRNA(Ile)-lysidine synthetase [Halanaerobium praevalens DSM 2228]
          Length = 464

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 18/198 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L+  + IL+AVSGG DS+ +L     +  +    KI+ +   +DH  R+ +K E  ++  
Sbjct: 15  LLNSSRILLAVSGGPDSLAMLDLFDKLKEEL---KIEIAVAHLDHMFRKESKSEADFIER 71

Query: 76  VCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              +  I     S + + PQ          AAAR+ R+          N  L+  AH   
Sbjct: 72  FAKKRGI--QFFSKRVNLPQIIKTNKVSAEAAARQERFTFFKNIIAKENFDLLALAHHKG 129

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNIS 187
           DQ ETV +   R     G GL G+    L      L +  P L   +++I ++  Q+ +S
Sbjct: 130 DQAETVLLNLFR-----GCGLKGLGGIELQAKFKELELIHPMLIFTKKEILAYCQQQKLS 184

Query: 188 WCEDPSNTDDRFERVRVR 205
              D SN ++ + R  +R
Sbjct: 185 PSFDSSNQENIYSRNIIR 202


>gi|296113823|ref|YP_003627761.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4]
 gi|295921517|gb|ADG61868.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4]
          Length = 451

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69
            L  PAH  + +A SGG DS+ L  A    L  R    I+   I   H   + A D    
Sbjct: 15  ELALPAHAKLYLACSGGRDSLALAYA--CFLLHRQGKIIRLPTILHVHHGWQAANDAWMQ 72

Query: 70  ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                 + +  D C  LRI  +    KNS+        AR+ARY         +N   ++
Sbjct: 73  LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172
           M AH  +DQ ETV MR     +  G+ GLSGM          D     + LW  RP+L+ 
Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            R  I  F     + + +D +NTD  + R R+R   +DI  H L L  K  +++
Sbjct: 174 SRNQISQFAKAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224


>gi|221230959|ref|YP_002510111.1| ATP-binding PP-loop family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|254789050|sp|B8ZJI9|TILS_STRPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|220673419|emb|CAR67877.1| putative ATP-binding PP-loop family protein [Streptococcus
           pneumoniae ATCC 700669]
          Length = 425

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|323165890|gb|EFZ51672.1| tRNA(Ile)-lysidine synthetase [Shigella sonnei 53G]
          Length = 193

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRY 72
           R L+    ILVA SGG DS    + LH ++  R+    +   AI V H L   A   VR+
Sbjct: 7   RQLLTSRQILVAFSGGLDST---VLLHQLVQWRTENPGVTLRAIHVHHGLSANADAWVRH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ 
Sbjct: 64  CENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFAR--TLLPGEVLVTAQHLDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSG 152
           ET  +  +R     G+   G
Sbjct: 122 ETFLLALKRGSGPAGLSAMG 141


>gi|154296481|ref|XP_001548671.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10]
 gi|150843338|gb|EDN18531.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10]
          Length = 627

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 18/146 (12%)

Query: 24  VAVSGGSDSMGL----------LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +AVSGG DSM L           I   S       GKI F A+ V+H +R+ + +E + V
Sbjct: 38  LAVSGGVDSMALAALCMQMKKNYIPFASDGYPIHLGKIDFRAVIVNHGVRDGSLEEAQKV 97

Query: 74  SDVCSRLRIAHSVVS--WK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             V   L +   +++  WK    N        + AR+ R+  I ++ +  + + I+  H 
Sbjct: 98  MGVLESLGMTSRILTLPWKEITGNPSQLPNFESLARKYRFQAIGKYCQKSDISSILLGHH 157

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGM 153
            DDQ ETV MR  +    +G+GL G+
Sbjct: 158 ADDQAETVLMRLAK--GARGVGLLGI 181


>gi|22299159|ref|NP_682406.1| hypothetical protein tlr1616 [Thermosynechococcus elongatus BP-1]
 gi|61217355|sp|Q8DIH2|TILS_THEEB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|22295341|dbj|BAC09168.1| ycf62 [Thermosynechococcus elongatus BP-1]
          Length = 344

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 15/187 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A+SGG DS+ L   L   L  +   +    A+  DH  R  +     +V  +  +  
Sbjct: 25  ILIALSGGQDSVCLTRLL---LDLQPHWQWSLVAVHCDHRWRADSTANANFVQQLAQKWH 81

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   VVS     P+T   AAAR  RY +    AK ++ T ++TAHT  D+ E++ +   R
Sbjct: 82  LPCEVVS-APDLPKTE--AAARSWRYQVFESVAKALDCTHVVTAHTQSDRAESLLLHLLR 138

Query: 142 DYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             +  G+       T+L   +L    + RP L   R    +F     +   +D +N +  
Sbjct: 139 GTSPDGLA------TLLPSRSLGAIQLVRPLLGMTRAQTAAFCQAYGLPIWQDETNHNLE 192

Query: 199 FERVRVR 205
           + R R+R
Sbjct: 193 YRRNRLR 199


>gi|148997947|ref|ZP_01825460.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|168491781|ref|ZP_02715924.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|169834329|ref|YP_001693445.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|307066647|ref|YP_003875613.1| putative ATPase [Streptococcus pneumoniae AP200]
 gi|226695548|sp|B1I6Y3|TILS_STRPI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|147755957|gb|EDK63000.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|168996831|gb|ACA37443.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|183574048|gb|EDT94576.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|306408184|gb|ADM83611.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Streptococcus pneumoniae AP200]
          Length = 425

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|148993574|ref|ZP_01823045.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|149003152|ref|ZP_01828061.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP14-BS69]
 gi|149007705|ref|ZP_01831314.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP18-BS74]
 gi|168487652|ref|ZP_02712160.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489346|ref|ZP_02713545.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae SP195]
 gi|225860057|ref|YP_002741566.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237651091|ref|ZP_04525343.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821203|ref|ZP_04597048.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298229478|ref|ZP_06963159.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255106|ref|ZP_06978692.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298501801|ref|YP_003723741.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126185|ref|YP_003878216.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae 670-6B]
 gi|254789053|sp|C1CNP4|TILS_STRZT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|147758893|gb|EDK65889.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147760700|gb|EDK67672.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP18-BS74]
 gi|147927795|gb|EDK78817.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|183569575|gb|EDT90103.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183572160|gb|EDT92688.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae SP195]
 gi|225727017|gb|ACO22868.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298237396|gb|ADI68527.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|306483247|gb|ADM90116.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae 670-6B]
 gi|327388996|gb|EGE87344.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA04375]
 gi|332071714|gb|EGI82207.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA17570]
          Length = 425

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|168576121|ref|ZP_02722026.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae MLV-016]
 gi|183578020|gb|EDT98548.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae MLV-016]
          Length = 425

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|225855746|ref|YP_002737257.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae P1031]
 gi|254789052|sp|C1CN76|TILS_STRZP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225726142|gb|ACO21994.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae P1031]
          Length = 425

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|332077819|gb|EGI88278.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA41301]
          Length = 412

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|311748470|ref|ZP_07722255.1| tRNA(Ile)-lysidine synthase [Algoriphagus sp. PR1]
 gi|126576986|gb|EAZ81234.1| tRNA(Ile)-lysidine synthase [Algoriphagus sp. PR1]
          Length = 439

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 23/190 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLR 81
           L+A SGG DS+ L   LH            F    V+  LRE   D +  +V ++  +  
Sbjct: 22  LLACSGGLDSVCLGTLLHQ-------SGFSFEVAHVNFHLREKESDGDELFVKNLAEQWN 74

Query: 82  I---AHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                H   ++   ++ K  T +  AAR+ RY    +  K  N   I+ AH  DDQLET+
Sbjct: 75  APFHVHQADTYSFVEDHKVSTQM--AARDIRYEWFEQIRKERNLAGILLAHHEDDQLETI 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++   R     G G+ G+    + +    + RP L   R +I  F     ++W ED SN 
Sbjct: 133 FLNLLR-----GTGIEGLYG--MAEKRGKLIRPLLPFSRAEILEFATAMELAWREDSSNK 185

Query: 196 DDRFERVRVR 205
              ++R ++R
Sbjct: 186 STDYKRNKLR 195


>gi|262393537|ref|YP_003285391.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. Ex25]
 gi|262337131|gb|ACY50926.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. Ex25]
          Length = 436

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS  LL  L       S   I+  A+ V H L   A D          ++ 
Sbjct: 22  VVLAFSGGVDSRLLLELLSRYQQAHS---IECHAVYVHHGLSSNADDWADKCLLWAKQVG 78

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I+ S+  VS   S  ++ +   AREARY  ++++ +     +++T    DDQLET  +  
Sbjct: 79  ISCSIELVSLDISNGES-IELLAREARYQALTKYIQ--EGDILLTGQHADDQLETFLLAL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M +++ +     + RP L  +R+ I     +  + W ED SN D R+
Sbjct: 136 KRGSGPKG--LSSMAESMPFSSGSLV-RPLLTIKRKTIEDAATKLGLEWVEDESNQDTRY 192

Query: 200 ERVRVRRFV 208
           +R  +R  V
Sbjct: 193 DRNFLRHCV 201


>gi|296122267|ref|YP_003630045.1| tRNA(Ile)-lysidine synthetase [Planctomyces limnophilus DSM 3776]
 gi|296014607|gb|ADG67846.1| tRNA(Ile)-lysidine synthetase [Planctomyces limnophilus DSM 3776]
          Length = 375

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 20/217 (9%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIA------LHSVLSDRSF-GKIKFSAISVDHC 61
           V+  V S    + +++AVSGG DS+ LL        L     D  F  K  +     +H 
Sbjct: 28  VKSCVSSKRESSRLVMAVSGGIDSLALLHGFLWVSQLDEWRRDHGFPEKSDWLIAHFNHQ 87

Query: 62  LRETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGL---------MAAAREARYALIS 111
           +R  A DE   +V  +  + ++ H  +  + S+   G            A R +RY  + 
Sbjct: 88  VRGKASDEDAEWVKQLAVQEQL-HVRIGDRQSEAGQGAGEIDHASISEEALRRSRYDFLR 146

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A    A  I+ AH  DDQ ETV     R       GL+GM  +  +  +L + RP L 
Sbjct: 147 RVAGEHQAKCIVLAHHADDQAETVLHHLLR--GSSFSGLAGMRRSQPFKPSLTLERPLLS 204

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +  +R FL++    W ED +N +  + R  +R+ V
Sbjct: 205 LNKSTLRQFLVEIGQDWREDGTNNETVWTRNALRQLV 241


>gi|149013373|ref|ZP_01834082.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|182682980|ref|YP_001834727.1| mesJ/ycf62 family protein [Streptococcus pneumoniae CGSP14]
 gi|194398531|ref|YP_002036732.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae G54]
 gi|303254912|ref|ZP_07340997.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae BS455]
 gi|303259737|ref|ZP_07345713.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP-BS293]
 gi|303262204|ref|ZP_07348149.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303265400|ref|ZP_07351307.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS397]
 gi|303266052|ref|ZP_07351946.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS457]
 gi|303268460|ref|ZP_07354254.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS458]
 gi|226695547|sp|B5E578|TILS_STRP4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695549|sp|B2IQZ8|TILS_STRPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|147762896|gb|EDK69844.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|182628314|gb|ACB89262.1| mesJ/ycf62 family protein [Streptococcus pneumoniae CGSP14]
 gi|194358198|gb|ACF56646.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae G54]
 gi|301800984|emb|CBW33645.1| putative ATP-binding PP-loop family protein [Streptococcus
           pneumoniae INV200]
 gi|302598183|gb|EFL65244.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae BS455]
 gi|302636844|gb|EFL67334.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302639289|gb|EFL69748.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP-BS293]
 gi|302641961|gb|EFL72314.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS458]
 gi|302644356|gb|EFL74609.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS457]
 gi|302645077|gb|EFL75317.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS397]
          Length = 425

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  ++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKAVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWEEKELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDTSNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|78777932|ref|YP_394247.1| tRNA(Ile)-lysidine synthetase-like [Sulfurimonas denitrificans DSM
           1251]
 gi|78498472|gb|ABB45012.1| tRNA(Ile)-lysidine synthetase-like protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 329

 Score = 56.6 bits (135), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 18/182 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG+DS  L      +L+  S   I F    V++ +RE ++DEV Y  ++ +   I
Sbjct: 16  LLAFSGGADSSALFF----LLTQES---IPFDIAIVNYGIREQSRDEVAYAKELSAANNI 68

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +  +   K +    A ARE RY   S+ +   +   ++TAH   D+ E   M+    
Sbjct: 69  TCHI--YNAPKIEQNFEAKAREIRYEFFSKLSLENSYENLLTAHHLGDRFEWFLMQFC-- 124

Query: 143 YAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
              KG G   ++GM  ++    +  I RP L   + ++  +L +    + ED SN D+  
Sbjct: 125 ---KGAGCAEIAGM-QSVQKRGSYTIIRPLLHLEKRELIEYLHRIKARYFEDESNLDESI 180

Query: 200 ER 201
           +R
Sbjct: 181 KR 182


>gi|317133212|ref|YP_004092526.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315471191|gb|ADU27795.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 457

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 18/190 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           +L A SGG+DS  LL   H + + R    ++  A  ++H LR  E  +DE  +V   C  
Sbjct: 19  VLAAFSGGADSTALL---HLLCALREEWGLRVFAAHLNHGLRGEEADRDEA-FVRARCVE 74

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             +   V    V  + ++         R  RYA  +E A+ + A  I TAHT  D +ET+
Sbjct: 75  WGVPCFVRRTDVRAEAARTGESEELCGRRLRYAFFAEQAEALGAK-IATAHTLSDSVETM 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G GL+G+        N  I RP +   R ++  +     +++  D +N 
Sbjct: 134 LLNLAR-----GTGLAGLRGIPPVRGN--IVRPLIETTRAEVEVYCAAHGLNYVTDSTNF 186

Query: 196 DDRFERVRVR 205
              + R R+R
Sbjct: 187 SRAYGRNRIR 196


>gi|332523953|ref|ZP_08400205.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315217|gb|EGJ28202.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 427

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 16/186 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  LH+         I  +   V+H  R+ ++ E  Y+     +  
Sbjct: 22  VLIAVSGGVDSMNLLHFLHTFKRQLD---ISIAIAHVNHKQRKESELEEDYLKKWAEQHD 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +  +K +  +      AR+ RY          + T ++TAH  DDQ+ETV+MR  R
Sbjct: 79  IPIFIDYFKGNFSEQ----RARDFRYQFFKRIMVQGDYTALVTAHHADDQVETVFMRLIR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   L+G+ +   +     I RPFL   + D+       N    ED SN    + R
Sbjct: 135 GSLLR--YLAGIKEVQPFSGGQLI-RPFLHFHKNDL------PNPYHFEDSSNLGLDYFR 185

Query: 202 VRVRRF 207
            RVR F
Sbjct: 186 NRVRNF 191


>gi|120610995|ref|YP_970673.1| tRNA(Ile)-lysidine synthetase [Acidovorax citrulli AAC00-1]
 gi|120589459|gb|ABM32899.1| tRNA(Ile)-lysidine synthetase [Acidovorax citrulli AAC00-1]
          Length = 347

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 64/246 (26%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL--- 80
           VA+SGG+DS  LL A     + R  G++   A+ V H L+  A     +   +C RL   
Sbjct: 20  VALSGGADSTALLHAC----AQRWPGQVH--ALHVHHGLQAAADGFETHCRALCGRLGVP 73

Query: 81  -RIAH-SVVSWKNSKPQTGLMAAAREARYALISEHA------------------------ 114
            RIA           P+     AAR+ RY  + + A                        
Sbjct: 74  LRIARVDARHAGGESPED----AARQRRYEALRDLAGGQQGAHQAGTDGVMPEMEAGQGG 129

Query: 115 -------------KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
                        + + A++ +  H  DDQ+ETV +   R     G G++G+     +  
Sbjct: 130 PGGDGDPDRPAAGRPVLASVALAQHA-DDQVETVLLALSR-----GAGVAGLAAMPAFWR 183

Query: 162 NLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
              I   RP L     D+R++L  R   W EDP+N D+R+ R R+R  +    L AL   
Sbjct: 184 RGGIDWHRPLLDVAGADVRAWLTARGEGWVEDPTNADERYTRNRIRAGL----LPALQAA 239

Query: 220 MKKFQD 225
             +F+D
Sbjct: 240 FPQFRD 245


>gi|119509008|ref|ZP_01628159.1| hypothetical protein N9414_04385 [Nodularia spumigena CCY9414]
 gi|119466174|gb|EAW47060.1| hypothetical protein N9414_04385 [Nodularia spumigena CCY9414]
          Length = 333

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 8/185 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ L+  L  +     +       + + HC      D     S V    +
Sbjct: 26  LLVAVSGGQDSLCLIKILLDLEPKWGWD------LGIAHCDHRWRTDSEANASHVEKLAK 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I         ++      AAAR  RYA +S  A+  N   I+T HT  D+ ET+     R
Sbjct: 80  IWGVSFYLATAREPLNSEAAARNWRYAALSAIAQANNYQYIVTGHTASDRAETLLYNLMR 139

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G GL  +        ++ + RP L   R     F  + ++   ED +N D ++ R
Sbjct: 140 GTG--GDGLQALTWQRPLTADICLVRPLLEITRTQTEEFCQEFHLPIWEDSTNLDVKYAR 197

Query: 202 VRVRR 206
            R+R+
Sbjct: 198 NRIRQ 202


>gi|77457345|ref|YP_346850.1| hypothetical protein Pfl01_1118 [Pseudomonas fluorescens Pf0-1]
 gi|123605783|sp|Q3KH95|TILS_PSEPF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|77381348|gb|ABA72861.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
           Pf0-1]
          Length = 442

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 8/189 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +H  +A SGG DS  LL  L  +  ++S   +  SAI V H L+  A     +   VC  
Sbjct: 23  SHWRIAFSGGLDSTVLLHLLAKLAKNQSIPAL--SAIHVHHGLQAAADAWPAHCQAVCEE 80

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +   V   +  + Q G             +  A T    +++T    DDQ ET+  R 
Sbjct: 81  LAVPLQV---QRVQVQPGASVERAARDARYAAFSAATQANDVLLTGQHRDDQAETLLFRL 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G  LSGM  T        + RP L   R ++ ++     + W EDPSN D +F
Sbjct: 138 LRGAGVRG--LSGMPATRALGQGS-LVRPLLDVTRAELEAYARDHGLRWIEDPSNQDRQF 194

Query: 200 ERVRVRRFV 208
            R  +R  +
Sbjct: 195 SRNYLRHQI 203


>gi|331265449|ref|YP_004325079.1| putative MesJ/Ycf62 family protein [Streptococcus oralis Uo5]
 gi|326682121|emb|CBY99737.1| putative MesJ/Ycf62 family protein [Streptococcus oralis Uo5]
          Length = 425

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 24/199 (12%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66
           F++   +  H  +L+A+SGG DSM L   L +    +  G I+     V+H  R  +   
Sbjct: 10  FLQKEYFKKHSKVLLALSGGLDSMFLYHLLSTY--QKELG-IELILAHVNHKQRNESDWE 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           ++E+R ++D  + L I  +  S   S+      A ARE RY    +  K   AT ++TAH
Sbjct: 67  ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKDAGATALITAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ MR  R    +   L+G+ +  + D  + I RP L   ++D   FL    I
Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKEGQVVD-GIEIIRPLLNFHKKD---FL---PI 170

Query: 187 SWCEDPSNTDDRFERVRVR 205
           +  ED +N +  + R R+R
Sbjct: 171 AHFEDQTNQESTYFRNRIR 189


>gi|308175886|ref|YP_003915292.1| tRNA(Ile)-lysidine synthase [Arthrobacter arilaitensis Re117]
 gi|307743349|emb|CBT74321.1| putative tRNA(Ile)-lysidine synthase [Arthrobacter arilaitensis
           Re117]
          Length = 308

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 12/158 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           +F A+ VDH L+  +    +     C  L +   ++S   + P     A+AR+ARY    
Sbjct: 44  RFGAVIVDHSLQAGSAQAAQRAGQQCRELGLNPVLISEVETSPDE---ASARDARYQAFD 100

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFL 170
           +     +A  +M AHT DDQ E V +   R    +   L+GM      Y       RP L
Sbjct: 101 QALAQFDADTLMLAHTRDDQAEQVLLGLVRGSGTR--SLAGMPAQRGAY------RRPLL 152

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
              R           I + +DPSN D  ++R  +R  +
Sbjct: 153 ELSRAQTEEICRHAGIEYWDDPSNADTGYKRNLIRHRI 190


>gi|42523405|ref|NP_968785.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100]
 gi|61216531|sp|Q6MLS8|TILS_BDEBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|39575611|emb|CAE79778.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100]
          Length = 316

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 14/174 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA+SGG+DS+ LL +L  V      G   F     +   +E  K+   +   +C +L 
Sbjct: 28  ILVALSGGTDSVALLRSLTKVHKKNLLGACYFH--HGEDSNQEYRKEAQEFCEKLCKKLE 85

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I  + + + + +K +    A  RE RY  +    K     L+ T H  DD LET  +R  
Sbjct: 86  IEFYPLRASQLAKSE----AEYRELRYEALDRLKKEQGFELVATGHHRDDLLETRLIRLI 141

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           R     G G  G     ++ L   + RP L   +++++ +L +  +   EDP+N
Sbjct: 142 R-----GTGAQGFA--AMHVLRDGLFRPLLEISKKELKKYLREERLRSFEDPTN 188


>gi|317052478|ref|YP_004113594.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5]
 gi|316947562|gb|ADU67038.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5]
          Length = 442

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 80/191 (41%), Gaps = 19/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++VAVSGG DSM LL  L  +  +    K+      ++H LR E ++ + R V   C RL
Sbjct: 25  MVVAVSGGVDSMVLLHLLAKIQPEL---KLNLVVAHLEHGLRGEESRADARLVIQTCERL 81

Query: 81  RI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI---NATLIMTAHTFDDQLET 134
            I   A  V      +        AR  RY    +         A  I TA T DD LE 
Sbjct: 82  GIPCYARFVDEHFWQRQAGNFQDKARALRYTFFRQVGTDFFSGRAFAIATAMTQDDCLEK 141

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           ++M   R  +  G       DT+         RP     +E + ++   + ISW ED SN
Sbjct: 142 IFMDILRGRSLLGSLSHQQPDTL---------RPLRTISKEALIAYATGQQISWREDTSN 192

Query: 195 TDDRFERVRVR 205
             D + R RVR
Sbjct: 193 HQDSYLRNRVR 203


>gi|291460211|ref|ZP_06599601.1| tRNA(Ile)-lysidine synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417158|gb|EFE90877.1| tRNA(Ile)-lysidine synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 351

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 26/199 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           IL+A+SGG+DS+ LL+ L  +  + SF      A  V H +R + A+ ++ +  ++  R 
Sbjct: 23  ILLALSGGADSVYLLLILEKLRGELSF---SLHAAHVQHGIRGKEAERDLEFSREIAERF 79

Query: 81  RIA-HSV---VSWKNSKPQTGLMAAAREARYALISEHAKTI---------NATLIMTAHT 127
           +I  H +   V   + K   GL   AR  RY  + +    I             I  A  
Sbjct: 80  KIPFHGIFVNVPEFSRKHHLGLEEGARLLRYRSLRDCLSEIMDKAPERAGGRGKIAVAQH 139

Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            +DQ ETV     R    +G+ G+    D I+        RP L   +E+I S L ++ I
Sbjct: 140 GNDQAETVLYHLFRGSGLRGLRGMEAEKDGII--------RPLLPILKEEILSELSEKGI 191

Query: 187 SWCEDPSNTDDRFERVRVR 205
           +  ED +N D  + R R+R
Sbjct: 192 AHREDSTNRDLSYARNRIR 210


>gi|222152147|ref|YP_002561307.1| hypothetical protein MCCL_1904 [Macrococcus caseolyticus JCSC5402]
 gi|222121276|dbj|BAH18611.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 403

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +I VAVSGG DSM LL  +      RS    +   + V+H LR+ +++E   +   C+  
Sbjct: 10  NIGVAVSGGVDSMVLLDKIR-----RSGCFKQLYVLHVNHQLRDVSREEQEMIQRYCTSY 64

Query: 81  RIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +           +   AR+ RY      AK  + + ++TAH  DDQ+ET++ R
Sbjct: 65  GIELIVYTIPKGTFDLSKSIQHKARKLRYDFFESVAKEKDLSWVLTAHHKDDQMETIFFR 124

Query: 139 --SQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             S R  +   GM +  +   + Y       +P L   + ++  +  +  + + ED SN 
Sbjct: 125 LLSNRFTFQPPGMQMI-VKGAVTY------GKPLLNYSKSELYQYAERERVPFMEDESNE 177

Query: 196 DDRFERVRVR 205
           + ++ R  +R
Sbjct: 178 EVKYTRNYIR 187


>gi|315044575|ref|XP_003171663.1| PP-loop family protein [Arthroderma gypseum CBS 118893]
 gi|311344006|gb|EFR03209.1| PP-loop family protein [Arthroderma gypseum CBS 118893]
          Length = 721

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +AVSGGSDSM L+     + S      +   A  VDH  R  +  E   V+D   +L 
Sbjct: 42  IGLAVSGGSDSMALVYLCSQLASQGFIPGLDIKAYIVDHKYRPESSHEAHSVADCVEKLG 101

Query: 82  IAHSVVS--WKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V++  W + +  T  G    AR  RY ++ +         ++  H  DD +ET  M
Sbjct: 102 VRSKVLTLQWPDGEALTKKGFETQARMLRYQILGKACTKDGVKALLLGHHQDDNVETALM 161

Query: 138 RSQRDYAEKGM 148
           R  + + + G+
Sbjct: 162 RVSKGHRKLGL 172


>gi|307546377|ref|YP_003898856.1| cell cycle protein [Halomonas elongata DSM 2581]
 gi|307218401|emb|CBV43671.1| cell cycle protein [Halomonas elongata DSM 2581]
          Length = 426

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 15/190 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA+SGG DS  LL+ L    S R    ++  A+ + H L+  A D  R+  ++C RL 
Sbjct: 25  VWVALSGGLDS-SLLLTLAVEASRRHPRPLR--ALHIHHGLQAAADDFERHCRELCERLG 81

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           ++  V  V    S  Q GL  AAR ARYA      +  + TL +  H  DDQ ET  + +
Sbjct: 82  VSLCVERVDVDVSGGQ-GLEGAARHARYAAFRRCLEAGD-TLWLAQHR-DDQAETFLLAA 138

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+                ++RP+L   R  + +   +R ++W EDPSN     
Sbjct: 139 LRGAGPRGLA---AMPVERGQAGFRLARPWLGVSRAALEAEAARRGLTWVEDPSNA---- 191

Query: 200 ERVRVRRFVR 209
           E V+ R F+R
Sbjct: 192 ETVQDRNFLR 201


>gi|260435057|ref|ZP_05789027.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 8109]
 gi|260412931|gb|EEX06227.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 8109]
          Length = 326

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 23/232 (9%)

Query: 10  RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R  ++  + P  + +L+AVSGG DSM LL  L  +     +G    S    DH   + + 
Sbjct: 13  RLLMQPQLLPQGSSLLLAVSGGQDSMALLALLQDLAPLHGWG---LSLWHGDHGWHDNSS 69

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                +S  C + ++   V   + +  Q    A AR+ RY  +++  +   A  ++T HT
Sbjct: 70  RITAELSSWCQQRQLPLQVD--QAAPGQVPSEAKARQWRYERLAQQGRQAGAD-VVTGHT 126

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFL 181
             D+ ET+ ++  R       G    C   L  +        W+ RP L  +R D     
Sbjct: 127 ASDRAETMLLQLAR-------GSDLACLAALPSVRPLSPEGPWLRRPLLHLQRHDTLQIC 179

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL-KMKKFQDLRVKVNN 232
            +  +   EDPSN    F R R+R+ V  + L AL+    ++  DL  +V+ 
Sbjct: 180 QELALPIWEDPSNQSPEFARNRIRQEVLPV-LEALHPGSTQRMSDLAERVSQ 230


>gi|328883305|emb|CCA56544.1| tRNA(Ile)-lysidine synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 335

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 89/184 (48%), Gaps = 7/184 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL      R    ++   I+VDH L++ +      V    + L 
Sbjct: 36  VLVACSGGADSMALASAL--AFEARKL-PVRAGGITVDHGLQDGSDTRAGEVVGRMTALG 92

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  S         + G  AAAR+ARYA +   A+   A  I+  HT DDQ ETV +   R
Sbjct: 93  LTPSEAVAVTVGREGGPEAAARDARYAALDAAAERHGAAAILLGHTRDDQAETVLLGLAR 152

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM    +   +    RPFL+  R+ +R   + + ++  +DP N+D  + R
Sbjct: 153 GSGIR--SLSGMA--AISGASGRYRRPFLQLDRQTVRKACVAQELAVWDDPHNSDPAYTR 208

Query: 202 VRVR 205
            R+R
Sbjct: 209 SRLR 212


>gi|161527617|ref|YP_001581443.1| PP-loop domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160338918|gb|ABX12005.1| PP-loop domain protein [Nitrosopumilus maritimus SCM1]
          Length = 304

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 33/242 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG DS+ LL  +H + S  +F   +   I++D  +     + +  V   C  L 
Sbjct: 50  VAVAVSGGKDSLALLKIIHEMASSHNF---RIKTITIDEGIPGYRNEALEIVEKFCGELG 106

Query: 82  IAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           + H V S+KN                +T   +     R   I   AK + A +I T H  
Sbjct: 107 VEHKVYSYKNLFELTLDEALDLRENEKTSSCSICGTLRRRAIDHAAKDVGADVIATGHNL 166

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILY------DLNLWISRPFLRCRREDIRSFLL 182
           DD L+T  +            LSG  + I +        +L   +PF      +I  +  
Sbjct: 167 DDTLQTFVINM----------LSGDTNKIGWMEPDTSSNSLRKIKPFCEIYESEIVFYAF 216

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             +I +  +P    +   R  +R F+  ++     +K   +Q + ++V+N V     K  
Sbjct: 217 TNDIPFQSEPCPHMNEGIRTEIREFLNSLEKQHSGIKNNLYQSI-LRVSNIVKETNYKEK 275

Query: 243 TV 244
           TV
Sbjct: 276 TV 277


>gi|290579537|ref|YP_003483929.1| putative cell-cycle protein [Streptococcus mutans NN2025]
 gi|254996436|dbj|BAH87037.1| putative cell-cycle protein [Streptococcus mutans NN2025]
          Length = 423

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 20/187 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +IL+AVSGG DSM LL  LH         +I+ +   V+H  R  A +E  Y+ +     
Sbjct: 21  NILIAVSGGVDSMNLLHFLHIYQKKL---QIRIAVAHVNHKQRPQADEEEIYLKNWARDN 77

Query: 81  RIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I      +K      G+ +   AR+ RY       K    T ++TAH  +DQ ETV++R
Sbjct: 78  HIPFYTAVFK------GIFSEKKARDFRYTFFKNIMKEHGYTALVTAHHANDQAETVFLR 131

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   L+G+ +   +  N  + RPFL+  ++++       NI   +D SN  + 
Sbjct: 132 LLR--GSRLRYLTGIKEIQEFG-NGQLIRPFLKFHKKEL------PNIFHFDDDSNQGNS 182

Query: 199 FERVRVR 205
           + R R+R
Sbjct: 183 YLRNRIR 189


>gi|187931484|ref|YP_001891468.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|226695538|sp|B2SG31|TILS_FRATM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|187712393|gb|ACD30690.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 398

 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 16/193 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77
           P+HI++  SGG DS  +L+ +   L       I   AI ++H L R++ K ++ +    C
Sbjct: 17  PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++ R     G GL+G+     Y    +  + RP L+  + +I  F    NIS+  D SN 
Sbjct: 129 QAIR-----GSGLAGLAGIPHYKELHHGGVLRPLLKYSKIEIEGFAKLNNISYIYDDSNE 183

Query: 196 DDRFERVRVRRFV 208
           D ++ R  +R  +
Sbjct: 184 DIKYRRNLIRNQI 196


>gi|170733430|ref|YP_001765377.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia MC0-3]
 gi|169816672|gb|ACA91255.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia MC0-3]
          Length = 473

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 23/227 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   AHI +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVSVALSGLPPDAHIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122
           A   V +     +RL +A    S +   P+    G+ A ARE RY  + E  +      +
Sbjct: 69  ADAWVAHAEGQAARLGVAFE--SMRVDVPRDSGLGIEATARERRYTALDEMGERHGVAAL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
             A   DDQ ETV ++  R     G G++G+           +++   RP LR  R  + 
Sbjct: 127 WLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSIERVRPLLRLLRAQLE 181

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +  Q  ++W +D SN D R+ R  +R  V    L AL +    F+D
Sbjct: 182 RYAEQHALTWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRD 224


>gi|86607208|ref|YP_475971.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-3-3Ab]
 gi|123505003|sp|Q2JRN8|TILS_SYNJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|86555750|gb|ABD00708.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 336

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 96/243 (39%), Gaps = 33/243 (13%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-- 70
           R L+ P   +LVA SGG DS  LL  L  +     +       I V HC    + DE   
Sbjct: 18  RQLLRPGQRLLVAFSGGQDSFSLLQILRDLQPRWRW------QIFVLHCDHRWSADETAC 71

Query: 71  -RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +++     +  + H+V   + + P     A AR  RY  + + A+T +   + T HT  
Sbjct: 72  AQFLQGWLQQQGLPHAV---ETADPIRWDEAGARAWRYQQLDKWARTWSCEAVATGHTAS 128

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--------WISRPFLRCRREDIRSFL 181
           D+ ET      R     G G +G+  ++ +   L        W+ RP L   R +   F 
Sbjct: 129 DRAETFLWNLLR-----GTGAAGLV-SLDWQRRLDERDPTSAWLVRPLLGLSRWETEEFC 182

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            Q  +    D SN D    R R+R  V        YLK      L   +N A  +L  ++
Sbjct: 183 RQYQLPVWPDRSNQDLAHGRNRLRLEVMP------YLKQHFNPQLEAALNRAATLLQAEH 236

Query: 242 LTV 244
             V
Sbjct: 237 ELV 239


>gi|113476777|ref|YP_722838.1| tRNA(Ile)-lysidine synthetase [Trichodesmium erythraeum IMS101]
 gi|110167825|gb|ABG52365.1| tRNA(Ile)-lysidine synthetase [Trichodesmium erythraeum IMS101]
          Length = 344

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 6/184 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+AVSGG DS+ L   L  + S   +     +    DH  R  ++    YV  +    +
Sbjct: 34  ILIAVSGGQDSLCLTKLLLDLQSKWGW---YLAVAHCDHKWRSDSEANANYVKKIAINWQ 90

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V   + +       A AR+ RY ++S+ A   N   I+T HT  D+ ET+     R
Sbjct: 91  LPSYV---ETADKIYKSEAEARKWRYQVLSKIALEFNFQYIVTGHTASDRAETLLYNLIR 147

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+        ++ +    + RP L   R    +F  ++ I   ED +N D  + R
Sbjct: 148 GSGTEGLQALTWQRPLIENFLPLLVRPLLEITRTQTSNFCQEQKIRIWEDSTNQDLHYAR 207

Query: 202 VRVR 205
            R+R
Sbjct: 208 NRIR 211


>gi|294789627|ref|ZP_06754861.1| tRNA(Ile)-lysidine synthase [Simonsiella muelleri ATCC 29453]
 gi|294482428|gb|EFG30121.1| tRNA(Ile)-lysidine synthase [Simonsiella muelleri ATCC 29453]
          Length = 427

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 10/185 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS   ++ LH +   R+      SAI V H L + A     +  D C   +
Sbjct: 17  IIVGFSGGLDS---VVLLHLLAMARTQYVFDLSAIHVHHNLSQNADKWADFCLDFCENWK 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I  ++   + +  + G+ AAAR ARYA+  E+A  +    +  AH  DDQ+ET ++ + R
Sbjct: 74  IPLTIKYVQVNSEKLGVEAAARAARYAVFREYAGDV----LALAHHRDDQVETFFLAALR 129

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +  GL+ M +   +  +L I+RP L   R  I  +     ++   D SN +  F R
Sbjct: 130 GSGIR--GLAAMAEN-QFSGSLKIARPLLHFSRHQIEQYAQHNQLTHITDDSNDNPIFLR 186

Query: 202 VRVRR 206
             +R 
Sbjct: 187 NWLRH 191


>gi|56708293|ref|YP_170189.1| PP-loop family protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670764|ref|YP_667321.1| PP-loop family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134301750|ref|YP_001121718.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224457415|ref|ZP_03665888.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254369106|ref|ZP_04985118.1| PP-loop family protein [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254370777|ref|ZP_04986782.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875114|ref|ZP_05247824.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|61216407|sp|Q5NFK3|TILS_FRATT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|123359434|sp|Q14H05|TILS_FRAT1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|166988060|sp|A4IXE6|TILS_FRATW RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|54113183|gb|AAV29225.1| NT02FT1257 [synthetic construct]
 gi|56604785|emb|CAG45864.1| PP-loop family protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321097|emb|CAL09247.1| PP-loop family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134049527|gb|ABO46598.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569020|gb|EDN34674.1| hypothetical protein FTBG_00586 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|157122056|gb|EDO66196.1| PP-loop family protein [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254841113|gb|EET19549.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159523|gb|ADA78914.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 398

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 16/193 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77
           P+HI++  SGG DS  +L+ +   L       I   AI ++H L R++ K ++ +    C
Sbjct: 17  PSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++ R     G GL+G+     Y    +  + RP L+  + +I  F    NIS+  D SN 
Sbjct: 129 QAIR-----GSGLAGLAGIPHYKELHHGGVLRPLLKYSKIEIEGFAKLNNISYIYDDSNE 183

Query: 196 DDRFERVRVRRFV 208
           D ++ R  +R  +
Sbjct: 184 DIKYRRNLIRNQI 196


>gi|229816588|ref|ZP_04446887.1| hypothetical protein COLINT_03646 [Collinsella intestinalis DSM
           13280]
 gi|229807923|gb|EEP43726.1| hypothetical protein COLINT_03646 [Collinsella intestinalis DSM
           13280]
          Length = 535

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 34/216 (15%)

Query: 14  RSLVYPAHILVAVSGGSDSMGL-LIALHSVLS---DRSFGKI---KFSAISVDHCLRETA 66
           R     A +++ VSGG+DS  L L+A    L     R   +I   +   + V+H LR  A
Sbjct: 36  RGQALAAPVVLMVSGGADSTALALMACTGELDIDDGRGCARIARERLHVLHVNHHLRGEA 95

Query: 67  KD-EVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN--- 118
            D +  +V D+C  L     + H+  +  + +    L AAAR+ RYA    + + ++   
Sbjct: 96  SDGDEAFVRDLCECLGLPLCVEHAHFADLDGR---NLEAAARDVRYAAARRYVRELSRQS 152

Query: 119 -----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                A  I+TAHT  D+ ET +M      A KG G +G+  +I    N+ I RP +   
Sbjct: 153 GTPRTAARILTAHTASDRAETFFM-----NAIKGSGAAGL-SSIPRRRNI-IVRPLMDRT 205

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
             ++  +L      W ED SN D  +    +R FVR
Sbjct: 206 HGELVRYLQVAGQPWREDESNRDTSY----LRNFVR 237


>gi|194476912|ref|YP_002049091.1| possible MesJ-like protein [Paulinella chromatophora]
 gi|171191919|gb|ACB42881.1| possible MesJ-like protein [Paulinella chromatophora]
          Length = 343

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 6/187 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG DSM L+  L+ +   +   K        +H  R  +      +S   S+  
Sbjct: 40  LLVAISGGQDSMALIKLLNDL---KRIYKWNLHLWHGNHRWRLESDKITCELSRWASQEL 96

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +     S   ++P     A AR+ RY  + + A+ +N   I+TAHT  D+ ET+ +   R
Sbjct: 97  LPFYTDS---AQPPPNSEAKARQWRYESLKQLAEKLNCHKIVTAHTGSDRAETLLLNIAR 153

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+        ++   NL + RP L   R D  +   +  +    DPSN    F R
Sbjct: 154 GSNRHGIASLPHIRYLVNSNNLSLVRPLLNFSRLDTAAICQKWKLPIWYDPSNESLYFSR 213

Query: 202 VRVRRFV 208
            R+R  +
Sbjct: 214 NRIRHQI 220


>gi|124514863|gb|EAY56374.1| TRNA(Ile)-lysidine synthetase [Leptospirillum rubarum]
          Length = 504

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 29/197 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEV---RYV 73
           P H  VA+SGG+DS+ L   LH  L DR       + +  +H  R  E  +DE+    + 
Sbjct: 39  PPHFHVAISGGADSVFLAFLLHLFLEDRH----SLTLVHFNHRTRGKENEEDEIFLRNFA 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA----LISEHAKTINATLIMTAHTFD 129
             +   LRI        ++ P+  L    R+ RYA    L++E+ K I    +  AH  D
Sbjct: 95  RHIGRPLRIGILSEPLPDNVPEDFL----RKKRYAFFDTLLTENRKNI----LFLAHHQD 146

Query: 130 DQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DQ+ET+ M   R    KG +G+    D  ++       RP L    ++IR+ L    I +
Sbjct: 147 DQVETILMNLFRGTGPKGVLGMLNKPDRRIF-------RPLLETGADEIRNVLSDHRIPY 199

Query: 189 CEDPSNTDDRFERVRVR 205
             D SN    + R RVR
Sbjct: 200 RIDSSNLQHDYLRNRVR 216


>gi|296392832|ref|YP_003657716.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985]
 gi|296179979|gb|ADG96885.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985]
          Length = 330

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 83/194 (42%), Gaps = 27/194 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR----ETAKDEVRYVSD 75
           A + VA+SGG+DS+ L  AL       +       A+ VDH L+    +TA    +   D
Sbjct: 35  ARVCVALSGGADSLALTAAL-------AREHTAVEALVVDHGLQPESAQTAARAAQLALD 87

Query: 76  V-CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + CS  R+    V+        G       AR A  +   +    + ++  HT DDQ ET
Sbjct: 88  LGCSGSRVLPVTVN--------GAGGLEAAARTARQAALRQAGAGSPVLLGHTLDDQAET 139

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R     G G   +     +D + W  RP L  RR   R+   +  +   EDP N
Sbjct: 140 VLLGLAR-----GSGPRSIQGMRAWD-DPW-GRPLLGVRRAMTRAVCAELGVQPHEDPMN 192

Query: 195 TDDRFERVRVRRFV 208
           TD RF R R+R  V
Sbjct: 193 TDPRFVRARLRAEV 206


>gi|289166919|ref|YP_003445186.1| MesJ/Ycf62 family protein [Streptococcus mitis B6]
 gi|288906484|emb|CBJ21314.1| MesJ/Ycf62 family protein [Streptococcus mitis B6]
          Length = 425

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKVVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRVESDWEEQKLRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARHFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D  S      I   ED SN  + +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPS------IFHFEDISNKKNHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|327541838|gb|EGF28350.1| tRNA(Ile)-lysidine synthetase [Rhodopirellula baltica WH47]
          Length = 397

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 21/204 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRS--------FGKIKFSAISVDHC---LR--ETAKDE 69
           LV  SGG+DS+ L+  L  + ++ S              + + V HC   LR  E+  DE
Sbjct: 40  LVGCSGGADSVALIRLLAELWAEESNVLNPANETVTNPVAPLVVAHCNHGLRGEESTADE 99

Query: 70  VRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAR---EARYALISEHAKTINATLIMT 124
             +V  +C +L++   +  VS  N+    G ++  R   + R       AK      +  
Sbjct: 100 A-FVRQLCDQLQLPLVIHHVSPPNNSATPGPVSDERTLRQIRRDFFERAAKQHGCRYVAV 158

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH+ DDQ ET+     R      +GL+G+ +    D ++ + RP L+ RR+ +R  L + 
Sbjct: 159 AHSADDQAETMLHHFIRGTGP--LGLAGIAEVSELDTDIVVRRPLLQVRRDTLRDGLREI 216

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
              W ED SN    + R  +R  V
Sbjct: 217 GQPWREDASNRHTIYTRNWIRHDV 240


>gi|257452690|ref|ZP_05617989.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_5R]
 gi|317059230|ref|ZP_07923715.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_5R]
 gi|313684906|gb|EFS21741.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_5R]
          Length = 444

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ILVA SGG DS+ L+  L  +    SF  +    + + H +R E A  + ++  +   + 
Sbjct: 23  ILVAFSGGPDSVFLVEMLLQLQEQLSFQML---LLHLHHMIRQEDADRDYQFCLEYARKK 79

Query: 81  RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +        V S+     Q+ L  A R  RY    E  K  +   I TAH  DD LET 
Sbjct: 80  NLEIIAKKLDVPSYAKENRQS-LEEAGRNLRYKFFQEIRKEKSYHKIATAHHLDDHLETF 138

Query: 136 YMRSQRDYAEKGM-GLS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           + R  R  + +G+ G+S    D I         RP     +++I  +L +  I +C D +
Sbjct: 139 FFRLLRGSSMEGLAGISRKQGDRI---------RPLRDFEKKEILFYLEEHQIPYCHDKT 189

Query: 194 NTDDRFERVRVR 205
           N +  + R R+R
Sbjct: 190 NEEVEYSRNRIR 201


>gi|225573962|ref|ZP_03782607.1| hypothetical protein RUMHYD_02056 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038779|gb|EEG49025.1| hypothetical protein RUMHYD_02056 [Blautia hydrogenotrophica DSM
           10507]
          Length = 468

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 15/192 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEV---RYVSDV 76
           I+  +SGG DSM LL  L   L  R     +  A+ V+H +R  E  +DE    +Y +D 
Sbjct: 28  IVAGISGGGDSMALLFLL---LKFRERCGYEVCAVHVNHGIRGDEAFRDETLVTKYCADR 84

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
                + H  V     K       A R  R     +  +      +  AH  +DQ ET+ 
Sbjct: 85  NVDCEVFHCSVPEAVKKYGWSEEEAGRILRRQAYEQVLRQWKGNKVALAHHQNDQAETML 144

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R     G GL G+    +  +   + RPFL   R +I  +L ++ I +  D +N  
Sbjct: 145 HNLSR-----GCGLRGI--RGMLPVQNGMIRPFLCIERREIDHYLKEKKIPYRTDSTNFS 197

Query: 197 DRFERVRVRRFV 208
           D++ R R+R+ V
Sbjct: 198 DQYIRNRIRKHV 209


>gi|71064744|ref|YP_263471.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4]
 gi|71037729|gb|AAZ18037.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4]
          Length = 525

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG DS+ L  AL   L  +S        + V+H L+  +    ++V++   R +
Sbjct: 43  IWLACSGGRDSLAL-AALCVQLYQQSRLPFLPQLLHVNHGLQADSDIWAQHVAEWAKRQK 101

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I  +++    ++       AAR+ARY ++       +  L+  AH  DDQ ETV MR   
Sbjct: 102 IPCTIL---QAQVNGHDEQAARQARYDVMRTQLNQDDVLLL--AHHADDQAETVLMR--- 153

Query: 142 DYAEKGMGLSGMCDTILYDLN--------LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
               +G GL+G+     + +         LW  RP+L  +R  I ++  +  +S+ +DP+
Sbjct: 154 --LVQGAGLNGLTGMQPWRVQTQGVHRIVLW--RPWLTIQRASISTYAQRLKLSYIDDPT 209

Query: 194 NTDDRFERVRVRRFV 208
           N      R  +RR +
Sbjct: 210 NDGGDNVRSGLRRDI 224


>gi|257466551|ref|ZP_05630862.1| cell cycle protein MesJ [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917706|ref|ZP_07913946.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691581|gb|EFS28416.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 444

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ILVA SGG DS+ L+  L  +    SF  +    + + H +R E A  + ++  +   + 
Sbjct: 23  ILVAFSGGPDSVFLVEMLLQLQEQLSFQML---LLHLHHMIRQEDADRDYQFCLEYARKK 79

Query: 81  RIA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +        V S+     Q+ L  A R  RY    E  K  +   I TAH  DD LET 
Sbjct: 80  NLEIIAKKLDVPSYAKENRQS-LEEAGRNLRYKFFQEIRKEKSYHKIATAHHLDDHLETF 138

Query: 136 YMRSQRDYAEKGM-GLS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           + R  R  + +G+ G+S    D I         RP     +++I  +L +  I +C D +
Sbjct: 139 FFRLLRGSSMEGLAGISRKQGDRI---------RPLRDFEKKEILFYLEEHQIPYCHDKT 189

Query: 194 NTDDRFERVRVR 205
           N +  + R R+R
Sbjct: 190 NEEVEYSRNRIR 201


>gi|189499568|ref|YP_001959038.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides BS1]
 gi|189495009|gb|ACE03557.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides BS1]
          Length = 334

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 13  VRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAK 67
           VR LV    H+L AVSGG DSM LL  L +V   RS  K++   ISV HC   LR E ++
Sbjct: 18  VRKLVSRREHVLAAVSGGPDSMALLYLLCAV---RSVLKVR---ISVAHCNFQLRGEESE 71

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIM 123
            +  +V   C +L +   V  +   K     +  +   AR  RY    E         + 
Sbjct: 72  LDEEFVRSECEKLGLECFVRRFDTQKDARRLKKSIEETARIERYGFFHELIAKDGFDRVA 131

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H   D  ETV     R     G  +SG+    +   +  + RP L  ++ DI  ++ +
Sbjct: 132 TGHHVSDNAETVLFNLIR-----GSSISGLKG--IRSEHGHVIRPLLLMQKRDITRYIGE 184

Query: 184 RNISWCEDPSN 194
           + IS+  D SN
Sbjct: 185 KEISYRVDSSN 195


>gi|302535220|ref|ZP_07287562.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. C]
 gi|302444115|gb|EFL15931.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. C]
          Length = 342

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 8/186 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G I+   I+VDH L+  +      V    + LR
Sbjct: 40  VLVACSGGADSMALASAL--AFEAPKLG-IRAGGITVDHGLQVGSDLRAAEVVTRMTALR 96

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +            + G  AAAR+ARYA + E A  + A  ++  HT DDQ ETV +   R
Sbjct: 97  LDPVESVAVRVGREGGPEAAARDARYAALDEAADRLGACAVLLGHTRDDQAETVLLGLAR 156

Query: 142 DYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               +   LSGM +        N +  RPFL+  R+  R   + +++   +DP N D  +
Sbjct: 157 GSGIR--SLSGMAEVSGGPGRTNRY-RRPFLQVDRQTARKACMVQSLPVWDDPHNIDPAY 213

Query: 200 ERVRVR 205
            R R+R
Sbjct: 214 TRSRLR 219


>gi|218245074|ref|YP_002370445.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8801]
 gi|218165552|gb|ACK64289.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8801]
          Length = 326

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 19/190 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSR 79
           IL+A+SGG DS+ L   L  + S   +       I++ HC    + DE    +V  +   
Sbjct: 25  ILMAISGGQDSVCLGKLLLDLQSKWGW------KIAIGHCDHRWSYDEGIADHVEKLAQN 78

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   +    N K      AAAR+ RY  + E A+  + T ++T HT  D+ ET+    
Sbjct: 79  WGIPFYLKVANNLKETE---AAARDWRYQSLIEIAQENDFTEVVTGHTQSDRAETLLYNL 135

Query: 140 QRDYAEKGMGLSGMCD-TILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R     G G  G+   T   +L  N+ + RP L   R +  +F  Q ++S  ED +N +
Sbjct: 136 IR-----GAGTDGLSSLTWQRNLTPNITLVRPLLNISRPETLAFCQQFDLSIWEDAANKN 190

Query: 197 DRFERVRVRR 206
            ++ R R+R+
Sbjct: 191 LKYSRNRIRQ 200


>gi|21243487|ref|NP_643069.1| cell cycle protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|61217385|sp|Q8PIY5|TILS_XANAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21109046|gb|AAM37605.1| cell cycle protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 440

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 9/191 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +L+A SGG DS    + LH + +   +      A+ V H L   A     +    C 
Sbjct: 20  PGPVLLAYSGGMDSS---VLLHLLAARPRYRHAGLRALHVHHGLHADADAWAAHCQRTCD 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L++   +V  + ++  +GL   A        +     I    +  AH  DDQ ET  +R
Sbjct: 77  ALQVPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLLR 135

Query: 139 SQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           + R  A    GL+ M          LW  RP L   R D+ ++     + W +DPSNTD 
Sbjct: 136 ALR--ASGPEGLAAMRPQRPFASGTLW--RPMLAHARADLLAYAHAHRLRWIDDPSNTDP 191

Query: 198 RFERVRVRRFV 208
           R +R  +R  V
Sbjct: 192 RHDRNFLRSQV 202


>gi|326567127|gb|EGE17249.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC1]
          Length = 451

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69
            L  PAH  + +A SGG DS+ L  A    L  R    I+   I   H   + A D    
Sbjct: 15  ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72

Query: 70  ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                 + +  D C  LRI  +    KNS+        AR+ARY         +N   ++
Sbjct: 73  LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172
           M AH  +DQ ETV MR     +  G+ GLSGM          D     + LW  RP+L+ 
Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            R  I  F     + + +D +NTD  + R R+R   +DI  H L L  K  +++
Sbjct: 174 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224


>gi|213027211|ref|ZP_03341658.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 172

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 7/159 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL A SGG DS  LL  L  VL       +   AI + H L   A   VR+   VC R +
Sbjct: 16  ILAAFSGGLDSTVLLHQL--VLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVTLADNGLGIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
                  GLS M +   +   L + RP LR  R+ +  +
Sbjct: 132 GSGPA--GLSAMGERSPFAGTL-LLRPLLRETRKTLEQW 167


>gi|289620220|emb|CBI53078.1| unnamed protein product [Sordaria macrospora]
          Length = 789

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 40/169 (23%)

Query: 19  PAH--ILVAVSGGSDSMGLLIAL-------HSVLS-----------DRSFGKIKFSAISV 58
           P H  +  A+SGG DSM L           HS++S           D    K++  A+ +
Sbjct: 38  PVHRQVACAISGGVDSMALAFLFNRLKQDTHSLISSGPSMEAFRISDNILNKVR--AVII 95

Query: 59  DHCLRETAKDEVRYVSDVCSR-----LRIAHSVVSWK-------NSKPQTGLMAAAREAR 106
           DH LRE + +E R V++V        L      ++W+       + K Q  +    R+ R
Sbjct: 96  DHGLREGSDEEARKVANVIRTKFPDFLYPVIEPINWRSELGPGVDPKTQPNIETLGRKLR 155

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMR--SQRDYAEKGMGLSGM 153
           Y   +   ++ NA  + TAH  DD+ ET+ MR  S R Y     GL G+
Sbjct: 156 YVAFASACRSYNAVSLFTAHHEDDEYETILMRMISGRGY----RGLQGI 200


>gi|281425843|ref|ZP_06256756.1| tRNA(Ile)-lysidine synthase [Prevotella oris F0302]
 gi|281400104|gb|EFB30935.1| tRNA(Ile)-lysidine synthase [Prevotella oris F0302]
          Length = 449

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 145/357 (40%), Gaps = 62/357 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDVC 77
           LVA+SGG DS    +AL  V+ +  +       I+V HC   LR  E+ +DE  +  ++C
Sbjct: 26  LVALSGGCDS----VALFRVMIELGY------HIAVIHCNFQLRGEESERDE-HFCEELC 74

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +  ++    V +   +        +  AARE RY    +  K I A  I+ AH  DD +E
Sbjct: 75  NSQKVPFHRVHFDTREYAELHHISIEMAARELRYQYFEQLRKDICADAILVAHHQDDTVE 134

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV +   R       GL G+        N  + RP L   R DI ++L     ++  D S
Sbjct: 135 TVLLNLIR--GTSIHGLQGIKPK-----NGHVIRPLLSMTRNDIENYLSSIQQTFITDSS 187

Query: 194 NTDDRFERVRVRR----FVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           N     +R ++R      +R+I+     ++ L  K   D     +NA+   + +   V  
Sbjct: 188 NLIADIKRNKIRLKVLPLLREINPSVSESITLTAKHLNDAAKVFDNALQESVERVTLVRK 247

Query: 247 RSIIAISQDILNID---STLLFYLLRV----SAAICGGQISLPGYRSMERVMLFLKSGKR 299
                +  D L  +      L+ +L++    S  I     SL              +GK+
Sbjct: 248 ADRYVVDIDKLEREISPEQTLYSILKIFSFSSVQIENMACSLDA-----------PTGKK 296

Query: 300 GCVSIGRVVIDRR----ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352
              +    VIDR     A+ L  +  V  +P    Y     VWD + +F N++  +I
Sbjct: 297 WLSNTHEAVIDRGTLVIASLLNASNKVLKVPETGCY-----VWDDKVKF-NITSHVI 347


>gi|282879019|ref|ZP_06287781.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310]
 gi|281298854|gb|EFA91261.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310]
          Length = 441

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 21/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           LVA+SGG+DS+ LL  L      ++ G     AI  +  LR  E+ +DE+ +  ++C +L
Sbjct: 25  LVALSGGADSVCLLRCL------KALG-YHLEAIHCNFRLRGEESDRDEL-FCQELCQKL 76

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    AH             +  AARE RYA      K + A  +   H  DD +ET+ 
Sbjct: 77  EIPLHLAHFDTRSYAQLHHVSIEMAARELRYAHFKNLCKAMGAGGVCVGHHQDDSVETIL 136

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R       G+ G+  T +   N +I RP L   R++I  +L     ++  D +N  
Sbjct: 137 INLVR-----STGIHGL--TGIAPKNDYIYRPLLCVSRKEITDYLKTIQQNYITDSTNLV 189

Query: 197 DRFERVRVR 205
              +R ++R
Sbjct: 190 PDVQRNKMR 198


>gi|330445162|ref|ZP_08308814.1| hypothetical cell cycle protein MesJ [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489353|dbj|GAA03311.1| hypothetical cell cycle protein MesJ [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 434

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 98  LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
           L  AAREARY  +++H +  + TLI   H+ DDQ+ET  +  +R     G+    +    
Sbjct: 96  LEQAAREARYNALAKHVQQGD-TLITAQHS-DDQIETFLLALKRGSGPAGLASMPVILPF 153

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
               +L   RP L   R +I  +     + W ED SN D+R++R  +R
Sbjct: 154 AKGTHL---RPLLNVTRAEIEQYGKAHQLEWVEDESNQDERYDRNFIR 198


>gi|326576214|gb|EGE26129.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis CO72]
          Length = 451

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69
            L  PAH  + +A SGG DS+ L  A    L  R    I+   I   H   + A D    
Sbjct: 15  ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72

Query: 70  ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                 + +  D C  LRI  +    KNS+        AR+ARY         +N   ++
Sbjct: 73  LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172
           M AH  +DQ ETV MR     +  G+ GLSGM          D     + LW  RP+L+ 
Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            R  I  F     + + +D +NTD  + R R+R   +DI  H L L  K  +++
Sbjct: 174 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224


>gi|326562167|gb|EGE12495.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 7169]
          Length = 451

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 101/234 (43%), Gaps = 46/234 (19%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69
            L  PAH  + +A SGG DS+ L  A    L  R    I+   I   H   + A D    
Sbjct: 15  ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72

Query: 70  ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                 + +  D C  LRI  +    KNS+        AR+ARY         +N   ++
Sbjct: 73  LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172
           M AH  +DQ ETV MR     +  G+ GLSGM          D     + LW  RP+L+ 
Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            R+ I  F     + + +D +NTD  + R R+R   +DI  H L L  K  +++
Sbjct: 174 LRDKISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLALNPKAIENI 224


>gi|326565650|gb|EGE15813.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 12P80B1]
 gi|326572293|gb|EGE22288.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC8]
          Length = 457

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69
            L  PAH  + +A SGG DS+ L  A    L  R    I+   I   H   + A D    
Sbjct: 21  ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 78

Query: 70  ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                 + +  D C  LRI  +    KNS+        AR+ARY         +N   ++
Sbjct: 79  LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172
           M AH  +DQ ETV MR     +  G+ GLSGM          D     + LW  RP+L+ 
Sbjct: 125 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 179

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            R  I  F     + + +D +NTD  + R R+R   +DI  H L L  K  +++
Sbjct: 180 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 230


>gi|268679075|ref|YP_003303506.1| tRNA(Ile)-lysidine synthetase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617106|gb|ACZ11471.1| tRNA(Ile)-lysidine synthetase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 331

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 24/179 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  L   LH          I F    V++  R  +++E  Y  ++   LR 
Sbjct: 21  LLAFSGGGDSTALFFLLH-------VKGISFDIAHVNYQTRPQSQEEEAYAKELS--LRF 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             ++ ++  +  +      AR  RY    +LI EH      TLIM AH   DQLE   M+
Sbjct: 72  NKNLFTFTCNLKERNFEHHARHVRYEFFESLIHEHGYE---TLIM-AHHLGDQLEWFLMQ 127

Query: 139 SQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                  KG GL  M     ++      I RP L   +  ++ FL +  I + ED SN 
Sbjct: 128 LC-----KGAGLVEMIGMREWEKREAYTIVRPLLHVSKAHLKDFLEKEKIHFFEDESNA 181


>gi|326564469|gb|EGE14695.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 46P47B1]
 gi|326574889|gb|EGE24819.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 101P30B1]
          Length = 451

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69
            L  PAH  + +A SGG DS+ L  A    L  R    I+   I   H   + A D    
Sbjct: 15  ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72

Query: 70  ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                 + +  D C  LRI  +    KNS+        AR+ARY         +N   ++
Sbjct: 73  LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172
           M AH  +DQ ETV MR     +  G+ GLSGM          D     + LW  RP+L+ 
Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            R  I  F     + + +D +NTD  + R R+R   +DI  H L L  K  +++
Sbjct: 174 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224


>gi|326566220|gb|EGE16372.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 103P14B1]
          Length = 451

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 100/234 (42%), Gaps = 46/234 (19%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69
            L  PAH  + +A SGG DS+ L  A    L  R    I+   I   H   + A D    
Sbjct: 15  ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72

Query: 70  ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                 + +  D C  LRI  +    KNS+        AR+ARY         +N   ++
Sbjct: 73  LVHCWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172
           M AH  +DQ ETV MR     +  G+ GLSGM          D     + LW  RP+L+ 
Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            R  I  F     + + +D +NTD  + R R+R   +DI  H L L  K  +++
Sbjct: 174 SRNQISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLTLNPKAVENI 224


>gi|159904318|ref|YP_001551662.1| ATPase [Prochlorococcus marinus str. MIT 9211]
 gi|159889494|gb|ABX09708.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9211]
          Length = 339

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+++SGG DSM LL     ++  R   + K      DH   + +      + + C+   
Sbjct: 35  LLLSISGGQDSMALLKL---IVDLRRLYEWKIFIWHGDHGWHKQSTQIATGLKEWCNNQE 91

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTFDDQLET 134
           +    VS + +K +     AAR  RY  ++ HA+ ++          ++T HT  D+ ET
Sbjct: 92  L--RFVSERATKEKIHSEQAARNWRYECLTAHAQLLSQQNQSSPCHYVLTGHTSTDRAET 149

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +   R     G+G      T+   + L   RP L   RED      + ++    DPSN
Sbjct: 150 LLLNLSRGTHLSGLGSLKSSRTLSGQIKL--VRPLLIFSREDTAQICKEMDLPVWLDPSN 207

Query: 195 TDDRFERVRVRRFV 208
           ++ R  R R+R  V
Sbjct: 208 SNMRISRNRIREEV 221


>gi|91223490|ref|ZP_01258755.1| cell cycle protein MesJ [Vibrio alginolyticus 12G01]
 gi|91191576|gb|EAS77840.1| cell cycle protein MesJ [Vibrio alginolyticus 12G01]
          Length = 436

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 21/194 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-------RYVS 74
           +++A SGG DS  LL  L       S   ++  A+ V H L   A +         + V 
Sbjct: 22  VVLAFSGGVDSRLLLELLSRYQQAHS---VECHAVYVHHGLSSNADNWADKCLLWAQQVG 78

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             CS  R++  +    N+     L+A  REARY  ++++ +     +++T    DDQ+ET
Sbjct: 79  ISCSIERVSLDI----NNGESIELLA--REARYQALTKYIQ--EGDILLTGQHADDQIET 130

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R    KG  LS M +++ +     + RP L  +R+ I     +  + W ED SN
Sbjct: 131 FLLALKRGSGPKG--LSSMAESMPFSCGSLV-RPLLTIKRKTIEDAATKLGLEWVEDESN 187

Query: 195 TDDRFERVRVRRFV 208
            D R++R  +R  V
Sbjct: 188 QDTRYDRNFLRHCV 201


>gi|82702932|ref|YP_412498.1| hypothetical protein Nmul_A1809 [Nitrosospira multiformis ATCC
           25196]
 gi|82410997|gb|ABB75106.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 472

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 53/283 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+ +A+SGG DS+ LL  L  + S     ++  SA+ V+H +   A     +  ++C   
Sbjct: 29  HLTIALSGGVDSVVLLDLLVPLASQM---QLPLSAVHVNHGISPNADKWSEFCRNLCQFR 85

Query: 81  RIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            I   +   K ++ P   L AAARE RY +     + +    I+ A   DDQ ET+ ++ 
Sbjct: 86  NIPLEIARVKVAQGPGISLEAAAREERYRIF----RGLQTDYIVLAQHLDDQAETLLLQL 141

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWIS--------------RPFLRCRREDIRSFLLQRN 185
            R    KG+    +  T+  ++   +               RP L   R +I  +  +  
Sbjct: 142 LRGAGVKGLSAMPVVRTVRKEMGETVPVNSVPALEGRPRLLRPLLDVSRREIEDYARKHA 201

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           + W  D SN +  F     R F+R    H L+  M+K                P Y T  
Sbjct: 202 LRWITDESNDEISFG----RNFLR----HELFPLMEK--------------RFPAYRTTF 239

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
           +R+   +++      S LL  L  V +A C    ++PG   +E
Sbjct: 240 LRASRHMAE-----ASALLDELAEVDSARC----AVPGKLHVE 273


>gi|116668717|ref|YP_829650.1| tRNA(Ile)-lysidine synthetase [Arthrobacter sp. FB24]
 gi|116608826|gb|ABK01550.1| tRNA(Ile)-lysidine synthetase [Arthrobacter sp. FB24]
          Length = 376

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 85/192 (44%), Gaps = 12/192 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETAKDEVRYVS 74
           YP  +LVA SGG DS+  L A+ S    R       +   A+ VDH L+  +       +
Sbjct: 34  YPERVLVACSGGPDSL-ALAAVASYFGRRGHVDGHPVSVGAVVVDHQLQPGSAAVAAQTA 92

Query: 75  DVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           DV   L ++   V   + +    G  AAAR+AR+A + E A    A +I+  HT DDQ E
Sbjct: 93  DVLRDLGLSPVDVRQVDVASTGIGPEAAARDARHAALEEAAAQAGANVILLGHTLDDQAE 152

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            V +   R    +   L+GM       +   + RPFL  RR D         +    DPS
Sbjct: 153 QVLLGLARGSGTR--SLAGM-----RPVRGLLLRPFLGLRRADTLEICAVEGLDPWRDPS 205

Query: 194 NTDDRFERVRVR 205
           N D  F R R R
Sbjct: 206 NADPSFARSRTR 217


>gi|329942871|ref|ZP_08291650.1| PP-loop family protein [Chlamydophila psittaci Cal10]
 gi|332287464|ref|YP_004422365.1| PP-loop family protein [Chlamydophila psittaci 6BC]
 gi|313848043|emb|CBY17041.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|325506513|gb|ADZ18151.1| PP-loop family protein [Chlamydophila psittaci 6BC]
 gi|328815131|gb|EGF85120.1| PP-loop family protein [Chlamydophila psittaci Cal10]
 gi|328914712|gb|AEB55545.1| PP-loop type ATPase [Chlamydophila psittaci 6BC]
          Length = 247

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 16/173 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEVRYVSDV 76
           A I++A+SGG DS+ LL+ L ++ S R F K+   A+++     C  E +K   +Y++++
Sbjct: 35  AKIVIALSGGKDSLSLLLMLKAI-SGRGFPKLDLYAVNIGGKYSCGSEVSK---QYLANI 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C ++ + +S ++     P+     +  + R  L+ + AK + AT +   H  DD ++T  
Sbjct: 91  CDKIHVPYSSIT-SPYDPEVPECYSCSQVRRRLLFQAAKDVGATAVAFGHHRDDVVQTAL 149

Query: 137 MR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           M    + ++A    G+  + D + + +   I RP +      IR F  +   S
Sbjct: 150 MNLLHKAEFA----GMLPVLDMVHFGIT--ILRPLILTPESWIRKFAKESGFS 196


>gi|257438697|ref|ZP_05614452.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium prausnitzii A2-165]
 gi|257198832|gb|EEU97116.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium prausnitzii A2-165]
          Length = 300

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 83/190 (43%), Gaps = 17/190 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79
           H+  AVSGG+DSM LL  L  +    +FG    +A  V+H LR  A D +  +V   C+R
Sbjct: 32  HLCAAVSGGADSMALLRVLLELRE--AFG-YPLTACHVNHGLRGEAADRDEAFVRAECAR 88

Query: 80  LRIAHSVVSWKN---SKPQTGLMAAAREARYALISE-HAKTINATLIMTAHTFDDQLETV 135
           L +  +V    +   + P       AR  RYA  ++  A  I+   I TAHT  DQ ET+
Sbjct: 89  LGVPLTVFRPADVGMTVPPHAGEDWARRLRYACFAQLLAGGID--CIATAHTATDQAETL 146

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R  R     G GL G     +        RP L   R +  +        W  D +N 
Sbjct: 147 LFRLAR-----GTGLHGA--GGIRPRRPGYCRPLLGLTRAETEALCAAFGQGWVTDETNE 199

Query: 196 DDRFERVRVR 205
            D + R R+R
Sbjct: 200 SDAYARNRLR 209


>gi|332184367|gb|AEE26621.1| tRNA(Ile)-lysidine synthetase [Francisella cf. novicida 3523]
          Length = 398

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 16/195 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSD 75
           + P+HI++  SGG DS  +L+ +   L       I   AI ++H L R++ K ++ +   
Sbjct: 15  ISPSHIIIGYSGGVDS-SVLLNISKELD------IPLIAIYINHNLHRDSLKWQI-HCQQ 66

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C R  +     +   +       A A + R A   +  +     L++  H  DDQ ET 
Sbjct: 67  TCQRYNLEFISHALDKAPKGESFEAWASKQRMAFFEKIMQQYPKPLLLLGHHQDDQAETF 126

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +++ R     G GL+G+     Y    +  + RP L   + +I  F    NI++  D S
Sbjct: 127 LIQAIR-----GSGLAGLAGMPYYKKLHHGGVLRPLLNYTKIEIEEFAKLNNITYIYDDS 181

Query: 194 NTDDRFERVRVRRFV 208
           N D ++ R  +R  +
Sbjct: 182 NEDTKYRRNLIRNEI 196


>gi|327467727|gb|EGF13221.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK330]
          Length = 425

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLVDYQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  ++ E + +  +  +L +     S+  S  +      AR+ RY    +  +  + T 
Sbjct: 59  QRPESEQEEKALVKIAEQLGVKIFTSSFSGSFSEN----VARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     I RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDF---- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
              +I   ED SN  + + R R+R
Sbjct: 168 --PDIQHFEDSSNFQNDYLRNRIR 189


>gi|326568391|gb|EGE18471.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC7]
          Length = 451

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 101/234 (43%), Gaps = 46/234 (19%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69
            L  PAH  + +A SGG DS+ L  A    L  R    I+   I   H   + A D    
Sbjct: 15  ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72

Query: 70  ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                 + +  D C  LRI  +    KNS+        AR+ARY         +N   ++
Sbjct: 73  LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172
           M AH  +DQ ETV MR     +  G+ GLSGM          D     + LW  RP+L+ 
Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            R+ I  F     + + +D +NTD  + R R+R   +DI  H L L  K  +++
Sbjct: 174 LRDKISQFAKAHALPYVDDITNTDPAYARGRIR---QDILPHLLALNPKAVENI 224


>gi|150005405|ref|YP_001300149.1| putative cell-cycle protein [Bacteroides vulgatus ATCC 8482]
 gi|149933829|gb|ABR40527.1| putative cell-cycle protein [Bacteroides vulgatus ATCC 8482]
          Length = 417

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG+DS+ LL  L  +          F      H   E +  + R+V+++C  L 
Sbjct: 5   VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 58

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V  +      S+    +  AARE RY    +  K     +I  AH  DD +ET  +
Sbjct: 59  VTLHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGMAVIAVAHHRDDSVETFLL 118

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+     +  N  I RP L   R+DI  +L      +  D +N  D
Sbjct: 119 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 171

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 172 EYMRNKIR 179


>gi|15606915|ref|NP_214296.1| cell cycle protein MesJ [Aquifex aeolicus VF5]
 gi|6016543|sp|O67728|TILS_AQUAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|66360363|pdb|1WY5|A Chain A, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
 gi|66360364|pdb|1WY5|B Chain B, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
 gi|160285466|pdb|2E21|A Chain A, Crystal Structure Of Tils In A Complex With Amppnp From
           Aquifex Aeolicus.
 gi|160285467|pdb|2E21|B Chain B, Crystal Structure Of Tils In A Complex With Amppnp From
           Aquifex Aeolicus.
 gi|160285468|pdb|2E21|C Chain C, Crystal Structure Of Tils In A Complex With Amppnp From
           Aquifex Aeolicus.
 gi|160285469|pdb|2E21|D Chain D, Crystal Structure Of Tils In A Complex With Amppnp From
           Aquifex Aeolicus.
 gi|160285496|pdb|2E89|A Chain A, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
           With Atp, Magnesium Ion, And L-Lysine
 gi|160285498|pdb|2E89|C Chain C, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
           With Atp, Magnesium Ion, And L-Lysine
 gi|160285499|pdb|2E89|D Chain D, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
           With Atp, Magnesium Ion, And L-Lysine
 gi|2984151|gb|AAC07685.1| cell cycle protein MesJ [Aquifex aeolicus VF5]
          Length = 317

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VDHCLRETAKDEVRYVSDVCS-- 78
           +L+A SGG DS+ L   L   L  +++  +K  A++  +H LRE+A+ +  +  +     
Sbjct: 27  VLIAFSGGVDSVVLTDVL---LKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKER 83

Query: 79  --RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             ++ +    V     + +  L  A R  RY  + E  ++     I TAH  +D LET  
Sbjct: 84  NMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +     +  +G GL G+   +  +    I RP    +R +I  +   + + W ED +N +
Sbjct: 144 L-----FFTRGTGLDGLIGFLPKEE--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE 196

Query: 197 DRFERVRVR 205
               R R+R
Sbjct: 197 VSIPRNRIR 205


>gi|62185135|ref|YP_219920.1| hypothetical protein CAB507 [Chlamydophila abortus S26/3]
 gi|62148202|emb|CAH63959.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 254

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEVRYVSDVCS 78
           I+VA+SGG DS+ LL+ L ++ S R F K+   A+++     C  E +K   +Y++++C 
Sbjct: 37  IVVALSGGKDSLSLLLMLKAI-SGRGFPKLDLYAVNIGGKYSCGSEVSK---QYLANICD 92

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++ + +S V+     P+     +  + R  L+ + AK + AT +   H  DD ++T  M 
Sbjct: 93  KIHVPYSSVT-SPYDPEVPECYSCSQVRRRLLFQAAKDVGATAVAFGHHRDDVVQTALMN 151

Query: 139 --SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
              + ++A    G+  + D + + +   I RP +      IR F
Sbjct: 152 LLHKAEFA----GMLPVLDMVHFGIT--ILRPLIFTPESYIRKF 189


>gi|327401180|ref|YP_004342019.1| hypothetical protein Arcve_1298 [Archaeoglobus veneficus SNP6]
 gi|327316688|gb|AEA47304.1| protein of unknown function UPF0021 [Archaeoglobus veneficus SNP6]
          Length = 307

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 24/132 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A+SGG DS+ L  AL  +  +R    ++F AI++D  ++      V    ++ S+L 
Sbjct: 50  IAIALSGGKDSVALTFALDRLYGERK--DVEFVAITIDEGIKGYRPPTVEIAREITSQLG 107

Query: 82  IAHSVVSWK--------------NSKPQT--GLMAAAREARYALISEHAKTINATLIMTA 125
           I H +VS+K              + KP T  G+       R  L++  A+ + AT + TA
Sbjct: 108 IEHHIVSFKENFGMALDEMVKLGDKKPCTYCGVF------RKYLLNRTARELGATKLATA 161

Query: 126 HTFDDQLETVYM 137
           H  DD+ +T+ +
Sbjct: 162 HNLDDETQTILL 173


>gi|326574306|gb|EGE24253.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis O35E]
          Length = 451

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 101/234 (43%), Gaps = 46/234 (19%)

Query: 15  SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--- 69
            L  PAH  + +A SGG DS+ L  A    L  R    I+   I   H   + A D    
Sbjct: 15  ELALPAHAKLYLACSGGRDSLALAYA--CFLLYRQGKIIRLPTILHVHHGWQAANDAWMQ 72

Query: 70  ------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                 + +  D C  LRI  +    KNS+        AR+ARY         +N   ++
Sbjct: 73  LVHRWAIEHGFD-CQILRITLA----KNSETH------ARDARYQAF---GLVMNQGDVL 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGM---------CDTILYDLNLWISRPFLRC 172
           M AH  +DQ ETV MR     +  G+ GLSGM          D     + LW  RP+L+ 
Sbjct: 119 MLAHHANDQAETVLMRL---VSGAGLQGLSGMKVWQAKTVHTDEAAKTITLW--RPWLKI 173

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            R+ I  F     + + +D +NTD  + R R+R   +DI  H L L  K  +++
Sbjct: 174 LRDKISQFANAHALPYVDDITNTDPAYARGRIR---QDILPHLLALNPKAVENI 224


>gi|162146631|ref|YP_001601090.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785206|emb|CAP54752.1| putative tRNA(Ile)-lysidine synthase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 430

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 28/370 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG+DS+ L              +    A+ VDH LR  A  E          L 
Sbjct: 40  VGVAVSGGADSLCLAYLAARW-------RRAVRALIVDHGLRPAAAAEAALTRRRLHALG 92

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   ++     +P  GL   AR ARYA ++   +      ++  H   DQ ET+ +R  R
Sbjct: 93  IPADILVLDGLRPGPGLADRARRARYAALARACRRAGIVDLLLGHHAGDQAETIAIR--R 150

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
             A    GL+GM  ++ +  +L + RP L   R+ +R+ L +  ++W EDPSN D R ER
Sbjct: 151 RAASGPDGLAGMA-SVSFTADLRLVRPLLGVDRDRLRATLRRAGLAWVEDPSNADPRAER 209

Query: 202 VRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
            RVR  + D D  A   L     +    R+  +   A L+ + +T+     +A++ D   
Sbjct: 210 ARVRAALDD-DPAARGPLRAAASRAGAARMDRDARQAALLARNVTMAEGGWVALADDP-T 267

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRAN-F 315
               L F +  VS     G   LP  R++  +    +    G  C+      + R  + +
Sbjct: 268 CPRALAFLMRAVS-----GSDYLPPSRAVAALCAAPRPATLGGTCLMAAGPALKRAGHRW 322

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS---LIQIGPQSYRKADVPSGIPPII 372
           L +       P ++  P+   VWDGR+     + +    + +G      A  P G     
Sbjct: 323 LLLREEAAMQPPVVARPD--CVWDGRFVLSAPAGTNLDGVTLGAAGPSGAWAPPGWRTQW 380

Query: 373 AQRALSSMPS 382
             RAL ++P+
Sbjct: 381 PARALRTLPA 390


>gi|269115197|ref|YP_003302960.1| tRNA(Ile)-lysidine synthase [Mycoplasma hominis]
 gi|268322822|emb|CAX37557.1| tRNA(Ile)-lysidine synthase [Mycoplasma hominis ATCC 23114]
          Length = 311

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 22/196 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            L+ VSGG DSM LL  L S         +      V++  R  +  +   VS  C+   
Sbjct: 28  FLIGVSGGPDSMWLLNLLKS---------LNIVVAHVNYNKRYDSNYDESLVSRFCADNN 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   ++S  N        A AR+ RY    E +K      I+ AH  DD LE+  M+   
Sbjct: 79  IPLEILSLHNKYSSGNFQAIARKERYDFYFEISKKYQCDYILLAHQKDDFLESSIMQENS 138

Query: 142 DYAEKGMG---LSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +      G   LS + + +++   LNLW         +++I  F  + +I +  D +N +
Sbjct: 139 NRKPLFWGIKQLSILNNNVIFRPMLNLWT--------KQEIIDFCNEYSILFATDYTNAE 190

Query: 197 DRFERVRVRRFVRDID 212
             + R ++R  ++ +D
Sbjct: 191 THYTRNKIRSNLKKLD 206


>gi|209543377|ref|YP_002275606.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531054|gb|ACI50991.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 438

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 28/370 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG+DS+ L              +    A+ VDH LR  A  E          L 
Sbjct: 48  VGVAVSGGADSLCLAYLAARW-------RRAVRALIVDHGLRPAAAAEAALTRRRLHALG 100

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   ++     +P  GL   AR ARYA ++   +      ++  H   DQ ET+ +R  R
Sbjct: 101 IPADILVLDGLRPGPGLADRARRARYAALARACRRAGIVDLLLGHHAGDQAETIAIR--R 158

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
             A    GL+GM  ++ +  +L + RP L   R+ +R+ L +  ++W EDPSN D R ER
Sbjct: 159 RAASGPDGLAGMA-SVSFTADLRLVRPLLGVDRDRLRATLRRAGLAWVEDPSNADPRAER 217

Query: 202 VRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
            RVR  + D D  A   L     +    R+  +   A L+ + +T+     +A++ D   
Sbjct: 218 ARVRAALDD-DPAARGPLRAAASRAGAARMDRDARQAALLARNVTMAEGGWVALADDP-T 275

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRAN-F 315
               L F +  VS     G   LP  R++  +    +    G  C+      + R  + +
Sbjct: 276 CPRALAFLMRAVS-----GSDYLPPSRAVAALCAAPRPATLGGTCLMAAGPALKRAGHRW 330

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS---LIQIGPQSYRKADVPSGIPPII 372
           L +       P ++  P+   VWDGR+     + +    + +G      A  P G     
Sbjct: 331 LLLREEAAMQPPVVARPD--CVWDGRFVLSAPAGTNLDGVTLGAAGPSGAWAPPGWRTQW 388

Query: 373 AQRALSSMPS 382
             RAL ++P+
Sbjct: 389 PARALRTLPA 398


>gi|297181792|gb|ADI17972.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [uncultured Chloroflexi bacterium
           HF0200_09I09]
          Length = 351

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 11/133 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSR 79
           ++VA SGG DS   LIA+  V      G++   A + DH LR   +++  + +V  +  +
Sbjct: 30  LIVACSGGPDSSAALIAVVRVRERAGGGEV--VAATFDHGLRPQVENDADIEFVQTLAGK 87

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + +  SVV  K ++      AAAR+ARY  +   A  ++A   ++ HT +DQ ETV +R 
Sbjct: 88  MGV-RSVVG-KATEGFGTSEAAARKARYIWLGRVALEMSARACVSGHTLNDQAETVLLRL 145

Query: 140 QRDYAEKGMGLSG 152
            R     G GL+G
Sbjct: 146 AR-----GTGLTG 153


>gi|319901663|ref|YP_004161391.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108]
 gi|319416694|gb|ADV43805.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108]
          Length = 423

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 25/192 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77
           ILVA+SGG+DS+ LL  L ++                 HC   LR T  D +  +V ++C
Sbjct: 22  ILVALSGGADSVALLRLLLAL----------GYTCEAAHCNFHLRGTESDRDETFVRNLC 71

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             L+I   ++ +   K        +  AAR  RY    +  K  +A +I  AH  DD +E
Sbjct: 72  KTLQIPLYIIHFSTEKEAKKRHVSIEMAARTLRYEWFEKMRKECDAGVIAIAHHQDDSVE 131

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G G++G+    +  +N  I RP L   R++I  +L      +  D +
Sbjct: 132 TLLLNLIR-----GTGINGL--QGIRPINGKIVRPLLCLGRKEIIEYLESIGQEYVTDST 184

Query: 194 NTDDRFERVRVR 205
           N  D + R ++R
Sbjct: 185 NFQDEYTRNKIR 196


>gi|160892003|ref|ZP_02073006.1| hypothetical protein BACUNI_04462 [Bacteroides uniformis ATCC 8492]
 gi|156858481|gb|EDO51912.1| hypothetical protein BACUNI_04462 [Bacteroides uniformis ATCC 8492]
          Length = 422

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           ILVA+SGG+DS    +AL  +L    +           HC   LR  E+ +DE  +V  +
Sbjct: 20  ILVALSGGADS----VALLRLLLSLGY------TCEAAHCNFHLRGAESDRDE-HFVRQL 68

Query: 77  CSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C   R+    V +   +        +  AARE RYA   +  +  +A +I  AH  DD +
Sbjct: 69  CLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAAVIAVAHHQDDSV 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +   R     G G++G+    +   N  I RP L   R++I  +L     ++  D 
Sbjct: 129 ETLLLNLIR-----GTGINGL--RGIRPRNGHIVRPLLCLDRKEIVGYLESIGQAYVTDS 181

Query: 193 SNTDDRFERVRVR 205
           +N  D + R ++R
Sbjct: 182 TNLQDEYTRNKIR 194


>gi|254884290|ref|ZP_05257000.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides sp. 4_3_47FAA]
 gi|319640622|ref|ZP_07995340.1| cell-cycle protein [Bacteroides sp. 3_1_40A]
 gi|254837083|gb|EET17392.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides sp. 4_3_47FAA]
 gi|317387756|gb|EFV68617.1| cell-cycle protein [Bacteroides sp. 3_1_40A]
          Length = 434

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG+DS+ LL  L  +          F      H   E +  + R+V+++C  L 
Sbjct: 22  VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 75

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V  +      S+    +  AARE RY    +  K     +I  AH  DD +ET  +
Sbjct: 76  VTLHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGMAVIAVAHHRDDSVETFLL 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+     +  N  I RP L   R+DI  +L      +  D +N  D
Sbjct: 136 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 188

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 189 EYMRNKIR 196


>gi|167563298|ref|ZP_02356214.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis EO147]
          Length = 491

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 47/312 (15%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++++   + +L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAIGVALSALPDDARIALAYSGGLDSTVLLHA-----AARIAGAERCVALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           A   + + ++    L +    AH  V   + +   G+ A+AR+ARY  +        A  
Sbjct: 69  ADAWLAHCAETADALGVRFDAAHVDVPRASGQ---GVEASARDARYRALETMCARHGARA 125

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDI 177
           +  A   DDQ ETV ++  R     G G++G+            ++   RP L   R  +
Sbjct: 126 LWLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPQYRPASTDVVRMRPLLHLLRAQL 180

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL--RVKVNNAVA 235
             +  Q  + W +D SN + R+ R  +R  V    L AL      F+D   R   + A A
Sbjct: 181 ERYAQQHALRWIDDESNANTRYARNALRVDV----LPALAPHFPGFRDALGRTAQHAAAA 236

Query: 236 M-LIPKYLTVHMRSII-----AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGY 284
             L+     + +R++      A+S+D L        + LL Y +R         + LPG 
Sbjct: 237 QRLLDDLAAIDLRAVAREDGRALSRDALVALDDERGANLLRYWMR--------SLGLPGA 288

Query: 285 RSMERVMLFLKS 296
            S  R+   +K 
Sbjct: 289 -SAARLAEMMKQ 299


>gi|126728389|ref|ZP_01744205.1| tRNA(Ile)-lysidine synthetase-like protein [Sagittula stellata
           E-37]
 gi|126711354|gb|EBA10404.1| tRNA(Ile)-lysidine synthetase-like protein [Sagittula stellata
           E-37]
          Length = 475

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 90/223 (40%), Gaps = 50/223 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +P+ I +AVSGG DSM +L   H     R FG ++   ++V+H  RE A  E   V+  C
Sbjct: 24  FPSEIGLAVSGGGDSMAMLALAHGWA--RVFG-VRLWVVTVNHGFREEAAAEAEMVAAEC 80

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L   H+ + W         M AAREAR  LI+     +   L+  AHT DD  ET  M
Sbjct: 81  AVLGWPHASLHWSWDG-HGNAMEAAREARVRLIAGWRGRLRHVLM--AHTQDDVAETFLM 137

Query: 138 RSQRDYAEKG-----------------------MGLSGMCDTILY--------------D 160
           R  R     G                       +G +   +   Y               
Sbjct: 138 RLARGSGVDGLSKMQARRVVDQPRLGVGALAPMLGEAPAAEGCRYPVIVTADGTAGRDAG 197

Query: 161 LNLWIS-------RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++ W+        RP L  RR D+R ++    + + +DPSN +
Sbjct: 198 VDWWVEGETFEILRPCLAMRRADLRHYVRVLQVPFVDDPSNEN 240


>gi|118475434|ref|YP_892513.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414660|gb|ABK83080.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 336

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 94/200 (47%), Gaps = 23/200 (11%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           ++    L+A S G+DS     AL  +L++++   I+F    +++  R  + +E     ++
Sbjct: 9   LHHKKCLLAFSYGTDST----ALFHILNEKN---IEFDCAFINYKTRVQSDEEEVSAKEL 61

Query: 77  CSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C +  +  +  ++  N +  +     AR+ R+    E     N   ++ AH  +D LE +
Sbjct: 62  CLKFNKNIYIKIAPLNLENGSNFEKKARDIRHKFFDEICIKFNYDTLILAHQLNDCLEWL 121

Query: 136 YMRSQRDYAEKGMGLSGMC-----DTILYDL-----NLWISRPFLRCRREDIRSFLLQRN 185
           +M+       KG G   +C     +T + +       + + RP +   R +I S+L Q+N
Sbjct: 122 FMQ-----LSKGSGTVQLCGLEPTNTKIAEFENIKKQISVIRPLINVSRNEIISYLKQKN 176

Query: 186 ISWCEDPSNTDDRFERVRVR 205
           I++  D SN D +F+R  +R
Sbjct: 177 INYFTDISNFDFKFKRNFIR 196


>gi|294777183|ref|ZP_06742640.1| tRNA(Ile)-lysidine synthetase [Bacteroides vulgatus PC510]
 gi|294449052|gb|EFG17595.1| tRNA(Ile)-lysidine synthetase [Bacteroides vulgatus PC510]
          Length = 442

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 17/188 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG+DS+ LL  L  +          F      H   E +  + R+V+++C  L 
Sbjct: 30  VLVALSGGADSVALLRVLLVLGYHCEAAHCNF------HLRGEESDRDERFVNELCKGLG 83

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V  +      S+    +  AARE RY    +  K     +I  AH  DD +ET  +
Sbjct: 84  VTLHVTHFDTVTYASRHHVSVEMAAREMRYDWFEQLRKERGMAVIAVAHHRDDSVETFLL 143

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G++G+     +  N  I RP L   R+DI  +L      +  D +N  D
Sbjct: 144 NLIR-----GAGINGLKGISPH--NGCIVRPLLEVSRQDILDYLRCLRQGYVTDSTNLQD 196

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 197 EYMRNKIR 204


>gi|194289326|ref|YP_002005233.1| tRNA(ile)-lysidine synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193223161|emb|CAQ69166.1| tRNA(Ile)-lysidine synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 468

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS+ LL A  + ++    G  +  A+ V H L+  A +  R+ + +C++ ++ + 
Sbjct: 32  LSGGRDSVALLHAARAAVAQAGDGA-RVVALHVHHGLQAEADEWDRFCAALCAQWQVGYF 90

Query: 86  V--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           V  VS + +  +    AA R    AL +  A +  A L++ AH  DDQ+ETV +R  R  
Sbjct: 91  VRRVSVRPAAGEGVEAAARRARYAALAAMCADS-GARLLLFAHHQDDQVETVLLRLFRGA 149

Query: 144 AEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              GM  +GM      D    + + RP+L   R  I  +     + W +DPSN D R+ R
Sbjct: 150 GVAGM--AGMPAMRPLDPRSGVMLLRPWLDEPRAGIEDYCAANALRWVDDPSNADGRYAR 207

Query: 202 VRVRR 206
             +R+
Sbjct: 208 NALRQ 212


>gi|291536194|emb|CBL09306.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Roseburia intestinalis M50/1]
          Length = 244

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 30/220 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + +SGG DS+ LL AL  +   R F   KF  ++V   L     D +  VS +C  L 
Sbjct: 26  IAIGISGGKDSLTLLYALSGL---RRFYPQKFDLVAVTVDLGYENFD-LTAVSKLCHDLD 81

Query: 82  IAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + + +V+          +N KP   L A  R+     +++  K +    +  AH  DD +
Sbjct: 82  VPYHIVNTEIAKILFEERNEKPTCSLCAKMRKGA---LNQAIKELGCNKVAYAHHMDDVI 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           ET ++          M   G        T + D +L I RP +     +++ F  +  + 
Sbjct: 139 ETAFL---------SMIFEGRFYVFPPKTYMEDSDLTIIRPLIYVSEAEVKGFRNKYQLP 189

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             ++P   D   +R  V++ ++ +++    +K K F  ++
Sbjct: 190 VVKNPCPMDGNTKREYVKKLIQQLNIDNPGVKTKLFHAIQ 229


>gi|167627656|ref|YP_001678156.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189035967|sp|B0TYH9|TILS_FRAP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|167597657|gb|ABZ87655.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 400

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 14/192 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+HI++  SGG DS  LL     +  D     I   AI ++H +   A     +   +C+
Sbjct: 17  PSHIIIGYSGGVDSSVLL----DITKDLDIPTI---AIYINHNIHPDALKWQLHCQTICN 69

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              I     S   +       A A + R     E     ++ +++  H  DDQ ET  ++
Sbjct: 70  NANIDFIAHSLDQAPKGESFEAWASKQRMDFFIEIMSQYSSPILLLGHHLDDQAETFLIQ 129

Query: 139 SQRDYAEKGMGLSGMCDTILY-DLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           + R     G GL+G+     Y  LN   + RP L   ++DI+ +  Q  I+   D SN +
Sbjct: 130 AIR-----GSGLAGLASMPYYKQLNHGAVLRPLLDYTKKDIQDYASQNKINHIYDDSNEN 184

Query: 197 DRFERVRVRRFV 208
            ++ R  +R  +
Sbjct: 185 IKYRRNLIRNQI 196


>gi|317480455|ref|ZP_07939551.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 4_1_36]
 gi|316903402|gb|EFV25260.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 4_1_36]
          Length = 422

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           ILVA+SGG+DS    +AL  +L    +           HC   LR  E+ +DE  +V  +
Sbjct: 20  ILVALSGGADS----VALLRLLLSLGY------TCEAAHCNFHLRGAESDRDE-HFVRQL 68

Query: 77  CSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C   R+    V +   +        +  AARE RYA   +  +  +A +I  AH  DD +
Sbjct: 69  CLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAAVIAVAHHQDDSV 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +   R     G G++G+    +   N  I RP L   R++I  +L     ++  D 
Sbjct: 129 ETLLLNLIR-----GTGINGL--RGIRPRNGHIVRPLLCLDRKEIVGYLESIGQAYVTDS 181

Query: 193 SNTDDRFERVRVR 205
           +N  D + R ++R
Sbjct: 182 TNLQDEYTRNKIR 194


>gi|78048470|ref|YP_364645.1| putative cell cycle protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036900|emb|CAJ24593.1| putative cell cycle protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 450

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 9/207 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++P+ +    +     P  +L+  SGG DS    + LH + +   +      A+ V H L
Sbjct: 14  IAPVLTGTPLLLPATPPGPVLLTYSGGMDSS---VLLHLLAATPRYRHAGLRALHVHHGL 70

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              A     +    C  L++   +V  + ++  +GL   A        +          +
Sbjct: 71  HADADAWAAHCQRTCDTLQVPLQIVRVQVAR-DSGLGLEAAARHARHAAFAQALTAGEWL 129

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFL 181
             AH  DDQ ET  +R+ R  A    GL+ M          LW  RP L   R D+ ++ 
Sbjct: 130 ALAHHRDDQAETFLLRALR--ASGPEGLAAMRPQRPFASGTLW--RPMLAHARADLHAYA 185

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
             + + W EDPSN D R +R  +R  V
Sbjct: 186 HAQGVRWIEDPSNADPRHDRNFLRSQV 212


>gi|160285497|pdb|2E89|B Chain B, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
           With Atp, Magnesium Ion, And L-Lysine
          Length = 315

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VDHCLRETAKDEVRYVSDVCS-- 78
           +L+A SGG DS+ L   L   L  +++  +K  A++  +H LRE+A+ +  +  +     
Sbjct: 27  VLIAFSGGVDSVVLTDVL---LKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKER 83

Query: 79  --RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             ++ +    V     + +  L  A R  RY  + E  ++     I TAH  +D LET  
Sbjct: 84  NMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETSL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +     +  +G GL G+   +  +    I RP    +R +I  +   + + W ED +N +
Sbjct: 144 L-----FFTRGTGLDGLIGFLPKEE--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE 196

Query: 197 DRFERVRVR 205
               R R+R
Sbjct: 197 VSIPRNRIR 205


>gi|270296347|ref|ZP_06202547.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273751|gb|EFA19613.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 424

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           ILVA+SGG+DS    +AL  +L    +           HC   LR  E+ +DE  +V  +
Sbjct: 22  ILVALSGGADS----VALLRLLLSLGY------TCEAAHCNFHLRGAESDRDE-HFVRQL 70

Query: 77  CSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C   R+    V +   +        +  AARE RYA   +  +  +A +I  AH  DD +
Sbjct: 71  CLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAAVIAVAHHQDDSV 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +   R     G G++G+    +   N  I RP L   R++I  +L     ++  D 
Sbjct: 131 ETLLLNLIR-----GTGINGL--RGIRPRNGHIVRPLLCLDRKEIVGYLESIGQAYVTDS 183

Query: 193 SNTDDRFERVRVR 205
           +N  D + R ++R
Sbjct: 184 TNLQDEYTRNKIR 196


>gi|307711226|ref|ZP_07647648.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis SK321]
 gi|307617188|gb|EFN96366.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis SK321]
          Length = 425

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +++A+SGG DSM L   L +   +    +I+     V+H  R  +  E + +  + + 
Sbjct: 20  AKVVLALSGGLDSMFLFKVLSTYKKEL---EIELILAHVNHKQRVESDWEEQELRKLAAE 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +   + ++     +    A AR  RY    E  K   AT ++TAH  DDQ+ET+ MR 
Sbjct: 77  AELPIYISNFSGEFSE----ARARNFRYDFFQEVMKKTGATALVTAHHADDQVETILMRL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +   LSG+ +  +    + I RPFL  +++D         I   ED SN ++ +
Sbjct: 133 IR--GTRLRYLSGIKEKQVVG-EIEIIRPFLHFQKKDFPP------IFHFEDISNQENHY 183

Query: 200 ERVRVR 205
            R R+R
Sbjct: 184 FRNRIR 189


>gi|282164695|ref|YP_003357080.1| hypothetical protein MCP_2025 [Methanocella paludicola SANAE]
 gi|282157009|dbj|BAI62097.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 310

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +V   H+ VA+SGG DS   L  L    S R    IKF+AI++D  +       +  V
Sbjct: 42  RMVVPGDHVAVAMSGGKDSAVTLSILFETFSMRP--DIKFTAITIDEGIDGYRNFSIPRV 99

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREA--------RYALISEHAKTINATLI 122
            ++C +L + H VVS++     T    L    +EA        R  L++  A+ I A  +
Sbjct: 100 KELCDKLGVPHIVVSFQEEVGCTLDEMLTHERKEASCTYCGVFRRTLLNTTARNIGANKL 159

Query: 123 MTAHTFDDQLETVYM 137
            T H  DD  +TV +
Sbjct: 160 ATGHNLDDDAQTVLL 174


>gi|241888931|ref|ZP_04776235.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC
           10379]
 gi|241864180|gb|EER68558.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC
           10379]
          Length = 438

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 18/195 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + +SGG DS+ L    H ++++      +  A  ++H LRE + +E  +V +      
Sbjct: 13  IALGLSGGVDSIALF---HLLVTEYKESYKELVAFHINHGLREQSYEEAEFVENFVKN-- 67

Query: 82  IAHSVVSWK---NSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             ++V  +K   N K Q     T     AR+ RY    E +       ++TAH  +DQ+E
Sbjct: 68  --YNVKFYKKELNMKDQIRDSHTSEEMLARKLRYGAFEEMSSLEGGVKLITAHHKNDQVE 125

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            + MR     + + M  + M +       L + RP L   + D+  +  + ++ +  D +
Sbjct: 126 NILMRL---LSGRSMDYNLMIEEKTTIGKLAVYRPLLNVLKADLEQYADKNDLKYYVDST 182

Query: 194 NTDDRFERVRVRRFV 208
           N D  + R  +R  +
Sbjct: 183 NFDTDYTRNNIRHNI 197


>gi|108796880|ref|YP_636178.1| hypothetical protein RF62 [Pseudendoclonium akinetum]
 gi|122217891|sp|Q3ZJ89|TILS_PSEAK RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56159578|gb|AAV80602.1| hypothetical protein RF62 [Pseudendoclonium akinetum]
          Length = 600

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 10/149 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE    F  + +    +L+A SGG DS  LL   + +LS + +G  K  A+  +HC  ++
Sbjct: 14  IEKSNLFTTNKIRDKKLLIAFSGGQDSSCLLTIFY-ILS-KKWG-FKLGAVYCNHCWTDS 70

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            +  +    D      I    V   NS+P       AR+ RY+     +K  +   ++T 
Sbjct: 71  PQSSLS-AFDTLQMFDIPFYFVESPNSEPMKP-EQKARDWRYSSFYTISKWEDYDFVLTG 128

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMC 154
           H+  D +ETV     R     G GL G+C
Sbjct: 129 HSLSDCVETVLFNLFR-----GSGLKGIC 152


>gi|119356415|ref|YP_911059.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|119353764|gb|ABL64635.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 325

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 28/200 (14%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +E +R  +R LV    H+L+AVSGGSDSM L   LH   + R     + SA+  +  LR 
Sbjct: 9   LEQIR--IRQLVSKEDHVLLAVSGGSDSMAL---LHLFCAIRRAVPCRISAVHCNFRLRA 63

Query: 65  TAKDE-VRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARY----ALISEHAK 115
              DE  R+V + C  L +    V +   K     +T +   AR  RY     L+SEH  
Sbjct: 64  EESDEDERFVQEACLALGVTCYTVGFDTLKMAGEWKTSIEETARILRYRYFDTLLSEHGM 123

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRR 174
            +    + T H  +D  ET+     R  +  G+ G+      I+        RP L   +
Sbjct: 124 KV----VATGHHVNDNAETMLFNLFRGTSLLGLRGIRAKRGKII--------RPLLLVHK 171

Query: 175 EDIRSFLLQRNISWCEDPSN 194
            +I  ++ +++I++  D +N
Sbjct: 172 VEILGYIDEKHIAFRIDATN 191


>gi|315655902|ref|ZP_07908800.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Mobiluncus curtisii ATCC 51333]
 gi|315489966|gb|EFU79593.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Mobiluncus curtisii ATCC 51333]
          Length = 415

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 33/217 (15%)

Query: 8   SVRFFVRSLVYPAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  ++SL  P   L+  A+SGG DS+ L  AL  V           S  +VDH  R  
Sbjct: 32  AVRRMLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPL-PWDVSCFTVDHGWRPE 90

Query: 66  AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISE----HAKTINAT 120
           +  E +        L   A +V+  +      G    AR  R+ L+++    HAKT    
Sbjct: 91  SAAESQAAVQCAHELGFTAATVLRGEGRGGANGPEGEARLLRWGLLAQAAISHAKTQGKA 150

Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-------CDTIL------------- 158
             +I+T HT DDQ ETV +R  R  + +   +S M       C T L             
Sbjct: 151 RAVILTGHTLDDQAETVLLRMARGSSLR--SISAMREFESLDCQTGLPLRFAWGEEDSGA 208

Query: 159 -YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
              ++L ++RP L  RR    +   Q  +    DPSN
Sbjct: 209 DAVVDLSLARPLLGIRRVVTHAACEQAGLVAVNDPSN 245


>gi|306826197|ref|ZP_07459532.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431673|gb|EFM34654.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 425

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 24/199 (12%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66
           F++   +  H  +++A+SGG DSM L   L +   +    +I+     V+H  R  +   
Sbjct: 10  FLQKEYFKKHSKVVLALSGGLDSMFLFQLLSTYQKEL---EIELILAHVNHKQRSESDWE 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           ++E+R ++D  + L I  +  S   S+      A ARE RY    +  K   AT ++TAH
Sbjct: 67  ENELRKLAD-AAELPIYITSFSGDFSE------ARAREFRYDFFRKIMKEAGATALVTAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ MR  R    +   L+G+ ++ + D  + I RP     ++D    L     
Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKESQVVD-GIEIIRPLFHFHKKDFPPIL----- 171

Query: 187 SWCEDPSNTDDRFERVRVR 205
              ED +N ++ + R R+R
Sbjct: 172 -HFEDQTNQENTYFRNRIR 189


>gi|13507961|ref|NP_109910.1| PP-loop superfamily protein ATPase [Mycoplasma pneumoniae M129]
 gi|2496288|sp|P75549|TILS_MYCPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1674311|gb|AAB96257.1| PP-loop superfamily ATPase/cell cycle protein MESJ-like protein
           [Mycoplasma pneumoniae M129]
 gi|301633532|gb|ADK87086.1| tRNA(Ile)-lysidine synthetase [Mycoplasma pneumoniae FH]
          Length = 289

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 24/190 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR- 81
           +  VSGG DSM LL   H  ++           + V++  R TA  + + V + C +L+ 
Sbjct: 7   IAGVSGGPDSMLLLKLYHKKIA---------CVVHVNYNKRTTALRDQKMVEEYCKQLKV 57

Query: 82  --IAHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             I H+V     WK +       A AR+ R+    + A       ++ AH  DD +E   
Sbjct: 58  PLIVHTVPEDTVWKKN-----FQAQARKIRFEQFQKAASLYKVDKLLLAHHRDDFIEQAK 112

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M  Q D  ++ M         LY + ++  RPF++  + +I +   +  + +  D +N  
Sbjct: 113 M--QLDARKRAMYYGIKTRGELYGMKVY--RPFIKYWKNEILALCEEHKVPYGIDETNAQ 168

Query: 197 DRFERVRVRR 206
             ++R +VR+
Sbjct: 169 PIYKRNQVRQ 178


>gi|238927155|ref|ZP_04658915.1| tRNA(Ile)-lysidine synthetase [Selenomonas flueggei ATCC 43531]
 gi|238884937|gb|EEQ48575.1| tRNA(Ile)-lysidine synthetase [Selenomonas flueggei ATCC 43531]
          Length = 463

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 25/210 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           +L A SGG+DS+ LL  L  +   R+ G         +H +R  +++ +   V+  C+  
Sbjct: 21  VLCACSGGTDSLALLDVLMRL---RAEGGPHVMCAHYEHGIRGGSSRADADAVAAYCAEH 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   +    V +     +  +  AAR  RY  +           I  AH  DD  ETV 
Sbjct: 78  HIPCVIEAGDVPYYARAHKCSIETAARVCRYDFLHRVHIREQCDGIALAHHADDLAETVL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           MR  R     G G +G+    ++D ++L   RPFL   R +I  ++ + N+  C D +N 
Sbjct: 138 MRILR-----GTGPAGLAAMRVWDGVHL---RPFLFTARAEIEVYIREHNLRPCHDVTND 189

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
               +R R+R        HAL  +++ + +
Sbjct: 190 QQDIQRNRIR--------HALLPELRTYGN 211


>gi|313673407|ref|YP_004051518.1| tRNA(ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940163|gb|ADR19355.1| tRNA(Ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 420

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 20/195 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78
           + ++VA SGG DS+ LL  L+ +  + +   I   A  V+H +R E  + +  +    C 
Sbjct: 26  SKVVVAFSGGRDSVALLHYLYLISKNYN---IDLFACHVNHGIRGEMGERDENFCKSFCG 82

Query: 79  RLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +  I   +    V     +    +  AAR+ RY  + E  + ++A  I TAH FDD +ET
Sbjct: 83  KFDIPLFIKKIDVPSYVRRFNLSVEDAARKLRYQALFEVLQKLDADYIATAHHFDDIVET 142

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            ++        K    S + +   +D +  + RPF    R  I  ++    + + +D +N
Sbjct: 143 FFV--------KVFTGSAIYNLKGFDRSDRVLRPFANVERIQIEKYIKHNKLEYVDDETN 194

Query: 195 TDDRFERVRVRRFVR 209
               F    VR +VR
Sbjct: 195 ----FSSDYVRNWVR 205


>gi|89092105|ref|ZP_01165060.1| mesJ protein [Oceanospirillum sp. MED92]
 gi|89083840|gb|EAR63057.1| mesJ protein [Oceanospirillum sp. MED92]
          Length = 442

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 13/186 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++A SGG DS  LL      L+DR     +   + V+H L   +     +      RL +
Sbjct: 35  VIAHSGGLDSQLLLHLAAKHLADR-----ELLVVHVNHQLHPKSGAWAEFSQREAERLGL 89

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           +H V       P++   A AR+ARYA  +   +  N  L+M  H  DDQ ET+  R  R 
Sbjct: 90  SHKVSC---VVPESSSEAHARDARYAAFTSLLRE-NDCLLMGHHA-DDQAETILFRMIRG 144

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +G  L GM  +  +     + RP L   R ++   +    +++ +DPSN+ D ++R 
Sbjct: 145 SGIRG--LQGMPFSRQFAQGQLL-RPLLNLERSELEGAVQNLGLAYIDDPSNSLDHYDRN 201

Query: 203 RVRRFV 208
            +R  V
Sbjct: 202 YLRHHV 207


>gi|154149315|ref|YP_001406091.1| tRNA(Ile)-lysidine synthase [Campylobacter hominis ATCC BAA-381]
 gi|153805324|gb|ABS52331.1| tRNA(Ile)-lysidine synthase [Campylobacter hominis ATCC BAA-381]
          Length = 331

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 15/186 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++A S GSDS  L    H++L       +KF    V++  RE +  E+    ++C +  +
Sbjct: 22  ILAFSHGSDSTALF---HTLLD----LNLKFDVAFVNYKTRENSDLEMVCARELCEKNNL 74

Query: 83  A-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             H ++S             AR+ R++   +        +++TAH  +D+ E   M+   
Sbjct: 75  KFHCLISPLKFNLNGNFENEARKIRWSFFEKLCVQNGYNVVITAHQLNDKFEWFLMQ--- 131

Query: 142 DYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               KG GL  +    + +   N  + RP L   +++I +FL   N+ +  D SN + +F
Sbjct: 132 --LSKGSGLVNLLSPEMVEKRENFTVLRPLLNTGKDEILNFLRINNLKFFNDISNQNLKF 189

Query: 200 ERVRVR 205
           +R  +R
Sbjct: 190 KRNFIR 195


>gi|307705917|ref|ZP_07642755.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK597]
 gi|307620578|gb|EFN99676.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK597]
          Length = 425

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 18/196 (9%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           F++   +  H  +++A+SGG DSM L   L +   +    +I+     V+H  R  +  E
Sbjct: 10  FLKKGYFKKHTKVVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRVESDWE 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + +  + +   +   +  +     +    A AR  RY    E  K   AT ++TAH  D
Sbjct: 67  EKELRKLAAEAELPIYISDFSGEFSE----ARARHFRYDFFQEVMKKTGATALVTAHHAD 122

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ+ET+ MR  R    +   LSG+ +  +  + + I RPFL  +++D         I   
Sbjct: 123 DQVETILMRLIR--GTRLRYLSGIKEKQVVGV-IEIIRPFLHFQKKDFPP------IFHF 173

Query: 190 EDPSNTDDRFERVRVR 205
           ED SN  + + R R+R
Sbjct: 174 EDTSNKKNHYFRNRIR 189


>gi|319779353|ref|YP_004130266.1| tRNA(Ile)-lysidine synthetase [Taylorella equigenitalis MCE9]
 gi|317109377|gb|ADU92123.1| tRNA(Ile)-lysidine synthetase [Taylorella equigenitalis MCE9]
          Length = 366

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 19/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG DS  +++A+ S      +G I+   I V H L   A + V+       R  
Sbjct: 53  IGIAFSGGKDS--VVLAIQSKYIATRYG-IEVHLIHVHHGLYAEADEWVQRNLKFAERFG 109

Query: 82  -IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            + H +     +    G+ AAAR+ARY  I++  K +    + T H  DDQ ET+ +R  
Sbjct: 110 FLIHILYVNVPTDTNKGVEAAARQARYKAITDKCKELGIGHVFTGHHIDDQSETILIRLL 169

Query: 141 RDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNT 195
           R     G G+ G+      + +Y +     RP+L      +I   +   +I   +DPSN 
Sbjct: 170 R-----GTGILGIKGIPPKSEIYGIKF--HRPWLNSTPTYNILELIGHESI---KDPSNF 219

Query: 196 DDRFERVRVRR 206
           D ++ R  VR 
Sbjct: 220 DSKYARGAVRN 230


>gi|327490349|gb|EGF22136.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1058]
          Length = 425

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L  + S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+     +     AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGDFSEN----AARQFRYDFFGKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH   DQ ETV+MR  R    +   LSGM     +     I RP L   + D     
Sbjct: 115 LVTAHHAADQAETVFMRLLR--GARLRHLSGMKAVQSFACGELI-RPLLTFHKSDFPY-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
               I   ED SN  + + R R+R
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIR 189


>gi|29840280|ref|NP_829386.1| hypothetical protein CCA00521 [Chlamydophila caviae GPIC]
 gi|29834628|gb|AAP05264.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
          Length = 247

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA+SGG DS+ LL+ L ++ S R F ++   A+++       A+   +Y++++C +++
Sbjct: 37  IVVALSGGKDSLSLLLMLKAI-SGRGFPELDLYAVNIGGKYSCGAEVSQQYLANICDKIQ 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR--S 139
           +  + ++     P+     +  + R  L+ + AK + AT +   H  DD ++T  M    
Sbjct: 96  VPFTSIA-SPYDPEVPECYSCSQVRRRLLFQAAKELGATAVAFGHHRDDVVQTALMNLLH 154

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           + ++A    G+  + D + +D+   I RP +      IR F
Sbjct: 155 KAEFA----GMLPVLDMVHFDIT--ILRPLILTPESWIRKF 189


>gi|315656172|ref|ZP_07909063.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493174|gb|EFU82774.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 415

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 90/217 (41%), Gaps = 33/217 (15%)

Query: 8   SVRFFVRSLVYPAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  ++SL  P   L+  A+SGG DS+ L  AL  V           S  +VDH  R  
Sbjct: 32  AVRRMLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPL-PWDVSCFTVDHGWRPE 90

Query: 66  AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISE----HAKTINAT 120
           +  E +        L   A +V+  +      G    AR  R+ L+++    HAKT    
Sbjct: 91  SAAESQAAVQCAHELGFTAATVLRGEGRGGANGPEGEARLLRWGLLAQAAISHAKTQGKA 150

Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-------CDTIL------------- 158
             +I+T HT DDQ ETV +R  R  + +   +S M       C T L             
Sbjct: 151 RAVILTGHTLDDQAETVLLRMARGSSLR--SISAMREFESLDCQTGLPLRFAWGEEDSGA 208

Query: 159 -YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
              ++L ++RP L  RR    +   Q  +    DPSN
Sbjct: 209 DAVVDLSLARPLLGIRRVVTHAACEQAGLVAVNDPSN 245


>gi|269966268|ref|ZP_06180357.1| cell cycle protein MesJ [Vibrio alginolyticus 40B]
 gi|269829183|gb|EEZ83428.1| cell cycle protein MesJ [Vibrio alginolyticus 40B]
          Length = 436

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
           AREARY  ++++ +     +++T    DDQ+ET  +  +R    KG  LS M +++ +  
Sbjct: 100 AREARYQALTKYIQ--EGDILLTGQHADDQIETFLLALKRGSGPKG--LSSMAESMPFSC 155

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
              + RP L  +R+ I     +  + W ED SN D R++R  +R  V
Sbjct: 156 GSLV-RPLLTIKRKTIEDAATKLGLEWVEDESNQDTRYDRNFLRHCV 201


>gi|257058096|ref|YP_003135984.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8802]
 gi|256588262|gb|ACU99148.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8802]
          Length = 326

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 19/190 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSR 79
           IL+A+SGG DS+ L   L  + S   +       I++ HC    + DE    +V  +   
Sbjct: 25  ILIAISGGQDSVCLGKLLLDLQSKWGW------KIAIGHCDHRWSYDEGIADHVEKLAQN 78

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   +    N K      AAAR+ RY  + E A+  + T ++T HT  D+ ET+    
Sbjct: 79  WGIPFYLKVANNLKETE---AAARDWRYQSLIEIAQENDFTEVVTGHTQSDRAETLLYNL 135

Query: 140 QRDYAEKGMGLSGMCD-TILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R     G G  G+   T   +L  N+ + RP L   R +  +F  Q ++   ED +N +
Sbjct: 136 IR-----GAGTDGLSSLTWQRNLTPNITLVRPLLNISRPETLAFCQQFDLPIWEDAANEN 190

Query: 197 DRFERVRVRR 206
            ++ R R+R+
Sbjct: 191 LKYSRNRIRQ 200


>gi|307710369|ref|ZP_07646810.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK564]
 gi|307618961|gb|EFN98096.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK564]
          Length = 425

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 18/196 (9%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           F+R   +  H  +++A+SGG DSM L   L +   +    +I+     V+H  R  +  E
Sbjct: 10  FLRKGYFKKHTKVVLALSGGLDSMFLFKVLSTYQKEL---EIELILAHVNHKQRIESDWE 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + +  + +   +   V ++     +    A AR  RY    E  K   AT ++TAH  D
Sbjct: 67  EKELRKLAAEAGLPIYVSNFSGEFSE----ARARHFRYDFFQEVMKKTGATALVTAHHAD 122

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ+ET+ MR  R    +   +SG+ +  +    + I RPFL   ++D         I   
Sbjct: 123 DQVETILMRLIR--GTRLRYISGIKEKQVVG-EIEIIRPFLHFHKKDFPP------IFHF 173

Query: 190 EDPSNTDDRFERVRVR 205
           ED SN ++ + R R+R
Sbjct: 174 EDTSNKENYYFRNRIR 189


>gi|240146321|ref|ZP_04744922.1| PP-loop family protein [Roseburia intestinalis L1-82]
 gi|257201562|gb|EEU99846.1| PP-loop family protein [Roseburia intestinalis L1-82]
          Length = 244

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 30/220 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + +SGG DS+ LL AL  +   R F   KF  ++V   L     D +  VS +C  L 
Sbjct: 26  IAIGISGGKDSLTLLYALSGL---RRFYPQKFDLVAVTVDLGYENFD-LTAVSKLCHDLD 81

Query: 82  IAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + + +V+          +N KP   L A  R+     +++  K +    +  AH  DD +
Sbjct: 82  VPYHIVNTEIAKILFEERNEKPTCSLCAKMRKGA---LNQAIKELGCNKVAYAHHMDDVI 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           ET ++          M   G        T + D +L I RP +     +++ F  +  + 
Sbjct: 139 ETAFL---------SMIFEGRFYVFPPKTYMEDSDLTIIRPLIYVSEAEVKGFRNKYPLP 189

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             ++P   D   +R  V++ ++ +++    +K K F  ++
Sbjct: 190 VVKNPCPMDGNTKREYVKKLIQQLNIDNPGVKTKLFHAIQ 229


>gi|241668228|ref|ZP_04755806.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876763|ref|ZP_05249473.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842784|gb|EET21198.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 400

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 14/192 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+HI++  SGG DS  LL     +  D     I   AI ++H +   A     +   +C+
Sbjct: 17  PSHIIIGYSGGVDSSVLL----DITKDLDIPTI---AIYINHNIHPDALKWQLHCQTICN 69

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              I     S   +       A A + R     E     ++  ++  H  DDQ ET  ++
Sbjct: 70  NANIDFIAHSLDQAPKGESFEAWASKQRMDFFIEIMSQYSSPTLLLGHHLDDQAETFLIQ 129

Query: 139 SQRDYAEKGMGLSGMCDTILY-DLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           + R     G GL+G+     Y  LN   + RP L   ++DI+++  Q  I+   D SN +
Sbjct: 130 AIR-----GSGLAGLASMPYYKQLNHGAVLRPLLDYTKKDIQNYASQNKINHIYDDSNEN 184

Query: 197 DRFERVRVRRFV 208
            ++ R  +R  +
Sbjct: 185 IKYRRNLIRNQI 196


>gi|296271399|ref|YP_003654031.1| tRNA(Ile)-lysidine synthetase [Thermobispora bispora DSM 43833]
 gi|296094186|gb|ADG90138.1| tRNA(Ile)-lysidine synthetase [Thermobispora bispora DSM 43833]
          Length = 325

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 93/205 (45%), Gaps = 18/205 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L   + +L A SGG+DS+  L A     + R    ++   ++VDH L+E + 
Sbjct: 13  AVRLSLAGLRPGSLVLAACSGGADSL-ALAAALGFCAPRL--GLRAGLLTVDHGLQEGSD 69

Query: 68  DEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
              R V+ +   L +      +VV  +   P+     A     YA +S  A+ + A  ++
Sbjct: 70  QRAREVAALAPELGLEPAEVLTVVVGRAGGPEAAARDAR----YAALSAAARRLGAVAVL 125

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             HT DDQ ETV +R  R    +   L+GM       ++    RPFL   R   R     
Sbjct: 126 LGHTRDDQAETVLLRLARGSGSR--SLAGMA-----PVSGIYRRPFLGLSRARTREACAA 178

Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208
             +   EDP N+D  + RVRVR+ V
Sbjct: 179 LGLRPWEDPHNSDPAYARVRVRKRV 203


>gi|225420299|ref|ZP_03762602.1| hypothetical protein CLOSTASPAR_06642 [Clostridium asparagiforme
           DSM 15981]
 gi|225041116|gb|EEG51362.1| hypothetical protein CLOSTASPAR_06642 [Clostridium asparagiforme
           DSM 15981]
          Length = 499

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 100/242 (41%), Gaps = 51/242 (21%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  IE        L     ++ AVSGG+DS+ LL  L  +  +     I+  A+ V H 
Sbjct: 8   FLETIEQYHM----LRQGGRVVAAVSGGADSVCLLALLCGLRGELG---IQVRAVHVHHG 60

Query: 62  LR-ETAKDEVRYVSDVCS---------RLRIAHSVVSWKNSKPQTGLM---------AAA 102
           LR + A  +  +V  +C          R+ +     + K S+ + G +         A A
Sbjct: 61  LRGDEADRDAEFVRQLCEGFKVPFALRRVDVREFARAKKLSEEEAGRLLRYRVFEECAGA 120

Query: 103 RE----ARYA----LISEHAKTINATL----------IMTAHTFDDQLETVYMRSQRDYA 144
            E    A +A    +  E A   NA L          +  AH  DDQ ET+     R   
Sbjct: 121 WERGAWAEWADEGTIGPEGAGGGNAWLKADRAADGVRVAVAHHGDDQAETILHNLCRGSG 180

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
            KG+G  GM       +   I RP +   R++I  +L    +S+C+D +N  D + R R+
Sbjct: 181 LKGLG--GM-----RPVRGRIIRPLIAVSRKEILEWLAANGLSFCQDSTNDTDHYTRNRI 233

Query: 205 RR 206
           RR
Sbjct: 234 RR 235


>gi|320010033|gb|ADW04883.1| tRNA(Ile)-lysidine synthetase [Streptomyces flavogriseus ATCC
           33331]
          Length = 357

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 81/188 (43%), Gaps = 15/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL      R    ++   I+VDH L+  +      V    + +R
Sbjct: 58  VLVACSGGADSMALASAL--AFESRKL-PVRAGGITVDHNLQPGSGLRAGEVVARLAEMR 114

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    A +V   ++  P+     A   A  A    H     A  ++  HT DDQ ETV +
Sbjct: 115 LDPVEAVAVRVGRDGGPEAAARDARYAALDAAAERH----GAFAVLLGHTRDDQAETVLL 170

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +   LSGM             RPFL+  R+  R   L ++I   +DP N D 
Sbjct: 171 GLARGSGIR--SLSGMA--AASGPAGRYRRPFLQLDRQTARKACLVQSIPVWDDPHNIDP 226

Query: 198 RFERVRVR 205
            + R R+R
Sbjct: 227 AYTRSRLR 234


>gi|325695771|gb|EGD37670.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK150]
          Length = 425

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM LL  L  + S +    I+ +   V+H  R  +  E + +  +  +L 
Sbjct: 22  VLVAVSGGLDSMTLLQLL--IDSQKELA-IELAIAHVNHKQRPESDQEEKALVKIAEQLG 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +     S+  S  +      AR+ RY    +  +  + T ++TAH  DDQ ETV+MR  R
Sbjct: 79  VKIFTSSFSGSFSEN----VARQFRYDFFGKVMQEGHYTALVTAHHADDQAETVFMRLLR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM     +     I RP L   + D        +I   ED SN  + + R
Sbjct: 135 --GARLRHLSGMKAVQPFACGELI-RPLLTFHKSDF------PDIDHFEDSSNFQNDYLR 185

Query: 202 VRVR 205
            R+R
Sbjct: 186 NRIR 189


>gi|31544871|ref|NP_853449.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(low)]
 gi|61216586|sp|Q7NAI9|TILS_MYCGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|31541717|gb|AAP57017.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(low)]
 gi|284930947|gb|ADC30886.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(high)]
          Length = 287

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+ VSGG DS+ LL        DR   +IK  A  +++  R TA  +   VSD C + +I
Sbjct: 10  LIGVSGGPDSIYLL--------DRYQDQIKV-ACHINYNKRPTALRDQLIVSDYCLKNKI 60

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              ++S   S +        AR+ RY               + AH  DD LET  M+  +
Sbjct: 61  PLEILSVSPSYQYHKNFQDQARKIRYDFFLSTGLKYQVDQCLIAHHKDDFLETAIMQYDK 120

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           +   + +   G+     Y  +L I RP L   +++I S+L Q  I +  D SN    ++R
Sbjct: 121 N---QELLFYGLHQESSYQ-SLKIFRPLLNLWKDEILSYLEQDKIVYGVDESNFLSTYQR 176

Query: 202 VRVR 205
            ++R
Sbjct: 177 NKIR 180


>gi|169627625|ref|YP_001701274.1| putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus ATCC
           19977]
 gi|169239592|emb|CAM60620.1| Putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus]
          Length = 296

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++ AHT DDQ ETV +   R     G G   +     +D + W  RPFL  RR + RS+ 
Sbjct: 94  VLLAHTLDDQAETVLLGLGR-----GSGARSIAGMRPWD-DPW-GRPFLDRRRTETRSYC 146

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  I+  EDP N D RF RVR+R  V
Sbjct: 147 DELAITAWEDPHNVDSRFVRVRLRHEV 173


>gi|148241171|ref|YP_001226328.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. RCC307]
 gi|147849481|emb|CAK26975.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. RCC307]
          Length = 337

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 8/184 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DS+ L      +L  R     +      +H  R+ A    +++  V ++  
Sbjct: 36  LLIAISGGQDSLALTR---LLLDLREQHHWQLQLWHGNHNWRQDAAANAQHLQQVAAQWG 92

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  +V     ++P     AAAR+ RY  +   A+T +  L++T HT  D+ ET+     R
Sbjct: 93  LPLTV---DCAEPAPKSEAAARQWRYERLQRQAETSSCPLVLTGHTATDRAETLLFNLIR 149

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GLS +  T      + + RP L   R D ++   Q  +    D +N D +F R
Sbjct: 150 --GADLTGLSSLRQTRPLGAGITVVRPLLAFSRADTQACCEQLGLLVWHDITNADRQFSR 207

Query: 202 VRVR 205
            R+R
Sbjct: 208 NRLR 211


>gi|154175317|ref|YP_001408589.1| PP-loop family protein [Campylobacter curvus 525.92]
 gi|112803929|gb|EAU01273.1| PP-loop family [Campylobacter curvus 525.92]
          Length = 330

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 123/313 (39%), Gaps = 60/313 (19%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S G DS     AL  +L+D   G   F    VD+  R  +KDEV     + ++   
Sbjct: 19  LLAFSHGVDS----TALFYILNDAGVG---FDIAIVDYNERAQSKDEVASARALAAKFDK 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                S   S+  +     AR+ARY   +E         ++ AH  DD+ E   M+    
Sbjct: 72  KCFTKSVNLSR--SNFECTARKARYEFFAEICAKNGYKNLILAHQLDDRFEWFLMQ---- 125

Query: 143 YAEKGMGLS---GMCD---TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              KG GL+   GM D      YD    I RP L+ ++  + +FL +R + +  D +N  
Sbjct: 126 -LAKGAGLNELLGMSDFERRKDYD----ILRPLLKFKKSQLEAFLKERGLKYFIDETNFS 180

Query: 197 DRFERVRVR---------RFVRDIDLHALYLKMKKFQDLRVKVNNAV-AMLIPKYLTVHM 246
            +F R  +R         RF   + + +  L     Q LR    +A   + + K     M
Sbjct: 181 HKFRRNFMRQNFSEPFLARFSNGV-IKSFELLQSDAQTLRPSFTSAADKIYLVKKDESAM 239

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
           R +  + +                   I G  +S    +  ER +      ++GCV  G+
Sbjct: 240 RGVDKVCK-------------------ILGVLMSEAQRKECERCL------EKGCVISGK 274

Query: 307 VVIDRRANFLWIT 319
           V +    NF+ +T
Sbjct: 275 VAVGANENFILVT 287


>gi|190575333|ref|YP_001973178.1| putative cell cycle protein [Stenotrophomonas maltophilia K279a]
 gi|190013255|emb|CAQ46889.1| putative cell cycle protein [Stenotrophomonas maltophilia K279a]
          Length = 442

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 76/185 (41%), Gaps = 13/185 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +LV  SGG DS    + LH +            A+ V H L+  A D V +    C  
Sbjct: 26  APLLVGYSGGVDST---VLLHWLWRCAQTSGTALRAVHVHHGLQPDADDWVLHCQQQCDA 82

Query: 80  LRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             I  +V  V  +N    TGL       +    +  A+      +  A   DDQ ET  +
Sbjct: 83  WGIELAVHRVQVENG---TGLGTEGAARQARRAAFAAELREGETLALAQHQDDQAETFLL 139

Query: 138 RSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R+ R  A    GL+ M   + L +  LW  RP L   R  +  +  Q  + W EDPSN +
Sbjct: 140 RALR--ASGVDGLAAMSTHSRLGEHPLW--RPLLAVPRSALLDYARQHALRWIEDPSNAE 195

Query: 197 DRFER 201
           D  +R
Sbjct: 196 DHADR 200


>gi|313889520|ref|ZP_07823166.1| tRNA(Ile)-lysidine synthetase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122132|gb|EFR45225.1| tRNA(Ile)-lysidine synthetase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 427

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 18/187 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  LH+    +   KI  +   V+H  R+ +  E  Y+    ++  
Sbjct: 22  VLIAVSGGVDSMNLLHFLHTF---KDQFKISIAIAHVNHKQRKASDLEEDYLKSWANQHD 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V  +K +  +      AR+ RY            T ++TAH  DDQ+ETV+MR  R
Sbjct: 79  IPIFVDYFKGNFSEQ----RARDFRYQFFKRIMSQGGYTALVTAHHADDQVETVFMRLIR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI-RSFLLQRNISWCEDPSNTDDRFE 200
               +   L+G+ +   +     I RPFL   ++ + + F         ED SN    + 
Sbjct: 135 GSLLR--HLAGIKEVQPFAGGQLI-RPFLHFHKKTLPQPF-------HFEDSSNLGLDYF 184

Query: 201 RVRVRRF 207
           R RVR F
Sbjct: 185 RNRVRNF 191


>gi|320528645|ref|ZP_08029798.1| tRNA(Ile)-lysidine synthetase [Solobacterium moorei F0204]
 gi|320131011|gb|EFW23588.1| tRNA(Ile)-lysidine synthetase [Solobacterium moorei F0204]
          Length = 401

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 26/223 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVAVS G DSM LL     +  D     I  +   V++  R  A +E  Y+   C    +
Sbjct: 9   LVAVSSGPDSMALL----QMCID---AGIDCAVAHVNYHHRPEADEEENYIRSFC----V 57

Query: 83  AHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
              +  + +++P T      AAAR+ RY    E  +      ++  H  DD LET  M+ 
Sbjct: 58  KKGIPIFVHNEPFTYTGNFEAAARDLRYRFFVEIVRYEGFQGVLIGHHQDDLLETYIMQE 117

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            ++   +  GL    + +++   +   RP L   +E++  +  +  + +  D +N  D +
Sbjct: 118 SKNIVPEYYGLRE--EMLMH--GVLFKRPLLHVAKEELVRYCKEHQLHYYIDATNLSDEY 173

Query: 200 ERVRVRR--------FVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            R ++R         F R+  L  +  +    Q+ R +V   +
Sbjct: 174 TRNQIRHQIVEPMTSFERNAYLREIKQRNAVLQERRCRVKTYI 216


>gi|75906734|ref|YP_321030.1| PP-loop [Anabaena variabilis ATCC 29413]
 gi|75700459|gb|ABA20135.1| PP-loop [Anabaena variabilis ATCC 29413]
          Length = 342

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ L+  L  +     +   +      DH  R  ++    +V ++     
Sbjct: 26  LLVAVSGGQDSLCLIKLLLDLQLKWGW---ELGIAHCDHRWRVDSQANADHVKNLSETWG 82

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           ++  + +   SKP     A ARE RY  +S  A+  N   I+T HT  D+ ET+     R
Sbjct: 83  VSFYLET--ASKP-INSEATAREWRYETLSAIAQAYNYEYIVTGHTASDRAETLLYNLMR 139

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GL  +        N+ + RP L   R+    F  +  +   ED +N D ++ R
Sbjct: 140 GTG--ADGLQALTWQRPLTENILLVRPLLEITRKQTEQFCQEFQLPIWEDSTNQDLKYAR 197

Query: 202 VRVRR 206
            R+R+
Sbjct: 198 NRIRQ 202


>gi|289706997|ref|ZP_06503332.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus SK58]
 gi|289556322|gb|EFD49678.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus SK58]
          Length = 392

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 10/192 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           LVA+SGG+DS+ L +A   ++  R   ++    A  VDH L+  +       +DV   L 
Sbjct: 69  LVALSGGADSLALAVACAVLVGTRDGARLGPIGAAVVDHGLQSGSDAVAAAAADVARILG 128

Query: 82  IAHSVVSW-----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +A   V+          P+    A          +         +++TAHT DDQ E V 
Sbjct: 129 LAPVTVTRVEVARTGDGPEA--DARRARRVALAAAARDARPGGAVVLTAHTADDQAEQVL 186

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R    +   L+G+           + RP L   R D  +      ++W EDP N D
Sbjct: 187 LGLARGSGTRS--LAGIPARGTLPGGAAVVRPLLGLARADTEAICRWAGLTWFEDPHNRD 244

Query: 197 DRFERVRVRRFV 208
               R RVR  V
Sbjct: 245 PALLRSRVRTRV 256


>gi|197106556|ref|YP_002131933.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           [Phenylobacterium zucineum HLK1]
 gi|196479976|gb|ACG79504.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           [Phenylobacterium zucineum HLK1]
          Length = 411

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 18/185 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG DS+ L +            +     +++DH L   +         +  RL 
Sbjct: 24  LAVAVSGGGDSVALALIAEGWAR---RSRRDLLLLTLDHGLNPDSAAWTGRCEALAQRLG 80

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ- 140
                ++W   KP +GL AAAR AR+ L++E A+   A +I+  HT DD  E   MR+  
Sbjct: 81  RPFRALAWTGPKPASGLPAAARAARHRLLAEAAREAGARVILMGHTADDVAEAQVMRAAG 140

Query: 141 ------RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                 R +A       G          +++ RP L  RR ++R +L  R  +W EDP+N
Sbjct: 141 ATTPEPRVWAPSPAWPEGR--------GVFVLRPLLDVRRAELRDWLSARGETWIEDPAN 192

Query: 195 TDDRF 199
            D RF
Sbjct: 193 ADPRF 197


>gi|86152849|ref|ZP_01071054.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85843734|gb|EAQ60944.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 321

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 24/200 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + +L+     L+A S GSDS  L   L          KI F  + +++  R+ +  E   
Sbjct: 7   ILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59

Query: 73  VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             ++  R    H  +  K++ K Q+     AR+ RY    +     +   ++ AH  +DQ
Sbjct: 60  AKELALRF---HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHHLNDQ 116

Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            E   M+  R     G GL+   GM  C+      N  + RP L   +++I SFL +++I
Sbjct: 117 FEWFLMQLSR-----GAGLAEILGMQECEK---RQNYTLLRPLLFISKDEISSFLKEKDI 168

Query: 187 SWCEDPSNTDDRFERVRVRR 206
            +  D SN ++++ R  +R+
Sbjct: 169 FYFHDESNENEKYFRNYIRK 188


>gi|266624801|ref|ZP_06117736.1| ExsB family protein [Clostridium hathewayi DSM 13479]
 gi|288863320|gb|EFC95618.1| ExsB family protein [Clostridium hathewayi DSM 13479]
          Length = 243

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 91/200 (45%), Gaps = 18/200 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL AL  +   + F     + SAI+VD    +    ++  V ++C 
Sbjct: 25  HIAVGISGGKDSLTLLYALQGL---KQFYPKHFELSAITVDLGFGDF---DLSPVKELCE 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           R  + +++VS +       ++ ++   A   + R   +++ A  +    I  AH  +D +
Sbjct: 79  RFSVPYTIVSTEIGKILFETRKESNPCALCAKLRKGALNDAAIKLGCNKIAYAHHREDLI 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   +    T L    L + RP +  +  D+  F  + ++  C++P
Sbjct: 139 ETMLL----SLIYEGRFYAFSPSTYLDRTGLTVIRPMIYVKEADVIGFKNKYDLPVCKNP 194

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D   +R  V++  + ++
Sbjct: 195 CPVDGHTKREYVKKLTKTLE 214


>gi|254421293|ref|ZP_05035011.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. PCC 7335]
 gi|196188782|gb|EDX83746.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. PCC 7335]
          Length = 232

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 85/206 (41%), Gaps = 20/206 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   +HIL+AVSGG DS+  L  L S LS + +  + +  I  DH  R  + +   +V
Sbjct: 26  RLLPKDSHILIAVSGGQDSL-CLARLLSDLSSKWYWSLGW--IHCDHGWRTDSTENAAHV 82

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +    +I    V  + +K      AAAR  RY +    A+    + ++T HT  D+ E
Sbjct: 83  VKLAEAWQIP---VRIELAKGLAKTEAAARGWRYEVFERVAREQGYSHVVTGHTKSDRAE 139

Query: 134 TVYMRSQRDYAEKGMGL--------------SGMCDTILYDLNLWISRPFLRCRREDIRS 179
           TV     R     G+G                G    I     + + RP L   R +   
Sbjct: 140 TVLYNLIRGAGTDGLGTLRWTRPLSLAACLAQGDNLDIKQSQAITLVRPLLDFTRAETAH 199

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
           F   ++I    D SN D  F R R+R
Sbjct: 200 FCQDQHIPVWIDSSNQDLNFRRNRIR 225


>gi|284989211|ref|YP_003407765.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284062456|gb|ADB73394.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 341

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 9/201 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +R+   P  +L A SGG+DS+   +A       R  G ++   I+VDH L+  + 
Sbjct: 14  AVRPGLRASDRP--VLAACSGGADSV--ALAAALAFEARHAG-VRAGGITVDHGLQPGSA 68

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +     + +   L +   +V         G   AAR ARY  ++  A  + A + +  HT
Sbjct: 69  ERAERTAQLLRGLGLDPVLVRRVAVAAGGGPEGAARTARYEALAAAAAQLGARVAL-GHT 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R    + +  +GM      D   W  RP L  RR   R     + + 
Sbjct: 128 LDDQAETVLLGLGRGSGPRSV--AGMVPERTADGTTWW-RPLLGVRRATTREACADQGLP 184

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
             +DP N D  + R R+R  V
Sbjct: 185 VWDDPWNADPAYTRARLRGEV 205


>gi|289522999|ref|ZP_06439853.1| tRNA(Ile)-lysidine synthase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503542|gb|EFD24706.1| tRNA(Ile)-lysidine synthase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 469

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 15/187 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++  +SGG DS+ LL  L ++      GK+  +        RE+ +D V +V D+    +
Sbjct: 39  VVAGISGGPDSVALLWMLVNLWR----GKVIVAHFEHGIRGRESIEDAV-FVRDLAFNFQ 93

Query: 82  ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
                 SV   +  +   G+  AAR  RY  + +      A  I   H  DD +ETV   
Sbjct: 94  CPFFMESVPVPQLRQKGEGIEEAARRLRYEFLEKIRSENKAAYIAVGHHNDDLVETVIFN 153

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +G  L G+ +   Y     I RP +   R +I   L   +I+W ED +N D  
Sbjct: 154 VIRGTGLRG--LQGIPEKRGY-----IVRPLIDFTRREITDLLEGLSINWREDSTNVDVN 206

Query: 199 FERVRVR 205
           + R ++R
Sbjct: 207 YARNKIR 213


>gi|242763827|ref|XP_002340652.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500]
 gi|218723848|gb|EED23265.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500]
          Length = 630

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 5/125 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I +AVSGG DSM L      +   R   +++  A  VDH  RE + +E   VS   S
Sbjct: 42  PRRIGIAVSGGPDSMALAYLCKQLQVTRPELELEMKAFVVDHKFREESTEEAHKVSSWLS 101

Query: 79  RLRIAHSVVS--WKNSKPQTGLMA---AAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + I   V++  W+  +     MA    AR  RY  + +         ++  H  DD +E
Sbjct: 102 NMDILSEVLTLDWEAGETPKKKMAFETLARTKRYQALGKACFKNQLNTLLIGHHLDDNVE 161

Query: 134 TVYMR 138
           T  +R
Sbjct: 162 TGLLR 166


>gi|282866364|ref|ZP_06275409.1| tRNA(Ile)-lysidine synthetase [Streptomyces sp. ACTE]
 gi|282558760|gb|EFB64317.1| tRNA(Ile)-lysidine synthetase [Streptomyces sp. ACTE]
          Length = 359

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 15/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL      R    ++   I+VDH L+  +      V    + +R
Sbjct: 60  VLVACSGGADSMALASAL--AFESRKL-PVRAGGITVDHNLQPGSGLRAAEVVARLTEMR 116

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    A +V   ++  P+     A     YA + + A+   A  ++  HT DDQ ETV +
Sbjct: 117 LDPVEAVAVHVGRDGGPEAAARDAR----YAALDDAAERHGAAAVLLGHTRDDQAETVLL 172

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +   LSGM             RPFL+  R+  R   + +++   +DP N D 
Sbjct: 173 GLARGSGIR--SLSGMASA--SGPAGRYRRPFLQLDRQTARKACMVQSLPVWDDPHNIDP 228

Query: 198 RFERVRVR 205
            + R R+R
Sbjct: 229 AYTRSRLR 236


>gi|319442401|ref|ZP_07991557.1| hypoxanthine phosphoribosyltransferase [Corynebacterium variabile
           DSM 44702]
          Length = 538

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 81/191 (42%), Gaps = 24/191 (12%)

Query: 22  ILVAVSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++  VSGG DS+ L  A +H+ L+         + ++VDH L++ +       +  C  L
Sbjct: 32  VVCGVSGGGDSLALAAACVHAGLA--------VTTVTVDHRLQDGSDRVAARAAQQCRDL 83

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
               +VV+     P  G    AR ARY  + E A   +   ++ AHT DD  E + +   
Sbjct: 84  GATATVVTVDVDGPGEG---PARAARYRALGEAA---DGRPVLVAHTADDDAEGLLLSLT 137

Query: 141 RDYAEKGMG-LSGM----CDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           R     G G L+G+     D  + D    ++ RP L   R   R    +  +   +DP N
Sbjct: 138 RG---SGTGSLAGLREITGDHPVVDAGASFLGRPLLAATRRQTRGSCAELGLGIWDDPHN 194

Query: 195 TDDRFERVRVR 205
                 R RVR
Sbjct: 195 EHPEILRSRVR 205


>gi|298373197|ref|ZP_06983187.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298276101|gb|EFI17652.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 445

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 29/194 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDE--VRYVS 74
           +LVAVSGG DS+ LL  L          +  +   +V HC   LR  E+  DE  VR ++
Sbjct: 23  LLVAVSGGIDSVVLLDML---------VRCGYRC-AVAHCNFHLRGNESDNDEQFVRALA 72

Query: 75  ---DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              D+   +R   ++ + KN      +  AAR+ RY       KT +   +  AH  +D 
Sbjct: 73  QKYDIPLFVRQFDTIQTAKND--NISIEMAARKLRYDWFEVLVKTNDFQSVAVAHHKNDN 130

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +   R     G GL G+    +      + RP L   RE+I  +    NI  C D
Sbjct: 131 AETVLLNMAR-----GSGLQGLAG--IRARRGSVVRPLLCFDREEIELYAKLNNIEHCTD 183

Query: 192 PSNTDDRFERVRVR 205
            +NTD  F+R R+R
Sbjct: 184 RTNTDTEFQRNRIR 197


>gi|33241260|ref|NP_876202.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|61216600|sp|Q7V9L9|TILS_PROMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33238790|gb|AAQ00855.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 336

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 88/197 (44%), Gaps = 14/197 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L Y + +L++VSGG DSM LL     +L  +   + K      DH     ++     + +
Sbjct: 29  LPYGSSLLISVSGGQDSMALLKL---ILDLQRIYEWKVHVWHGDHGWHNQSRQIAEELEE 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-------ATLIMTAHTF 128
            C   ++  S    + +K +      AR  RY  + + AKT++          ++T HT 
Sbjct: 86  WCKCQKL--SFFCNRTNKQKVSTEEDARNWRYKSLIQQAKTLSKESPSLPCERVLTGHTA 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D+ ET  M   R    K  GLS + +    +  + + RP LR  R++      + ++  
Sbjct: 144 NDRTETFIMNLARGAHLK--GLSSLREDRTLETKIQLIRPILRFSRQETIQICDEMDLPI 201

Query: 189 CEDPSNTDDRFERVRVR 205
             DPSN++  + R ++R
Sbjct: 202 WIDPSNSNIAYSRNKIR 218


>gi|229829758|ref|ZP_04455827.1| hypothetical protein GCWU000342_01855 [Shuttleworthia satelles DSM
           14600]
 gi|229791747|gb|EEP27861.1| hypothetical protein GCWU000342_01855 [Shuttleworthia satelles DSM
           14600]
          Length = 509

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 19/194 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           +L+AVSGG+DS+ LL    +++  R +  +    + V+H LR  E+ +D   +V  +C  
Sbjct: 24  LLLAVSGGADSVALLRL--ALIWRRKY-DLLLRVLHVEHGLRGRESLEDAA-WVRKLCRE 79

Query: 80  LRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +   VV     +   ++ ++    AAR  RY  + E A   +   I+ AH  +D  ET
Sbjct: 80  HGLPCQVVPVDVRALAETEGRS-EEEAARILRYQALEEAAARWDGAKIVLAHNLNDAAET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +       +  +G GL G+    +      I RP L   R +I  +L      W  D SN
Sbjct: 139 LLF-----HLVRGTGLEGLA--AIPPKRGRIVRPLLAASRREIEDWLRDLGQEWRRDRSN 191

Query: 195 TDDRFERVRVRRFV 208
            +D + R R+R  V
Sbjct: 192 EEDTYSRNRIRHQV 205


>gi|107028745|ref|YP_625840.1| tRNA(Ile)-lysidine synthetase-like [Burkholderia cenocepacia AU
           1054]
 gi|116690096|ref|YP_835719.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia HI2424]
 gi|105897909|gb|ABF80867.1| tRNA(Ile)-lysidine synthetase-like protein [Burkholderia
           cenocepacia AU 1054]
 gi|116648185|gb|ABK08826.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia HI2424]
          Length = 473

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 23/227 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122
           A   V +     +RL +A    S +   P+    G+ A ARE RYA + E  +      +
Sbjct: 69  ADAWVAHAEGQAARLGVAFE--SMRVDVPRDSGLGIEATARERRYAALDEMGERHGVAAL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
             A   DDQ ETV ++  R     G G++G+           +++   RP LR  R  + 
Sbjct: 127 WLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSIERVRPLLRLLRAQLE 181

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +  Q  ++W +D SN D R+ R  +R  V    L AL +    F+D
Sbjct: 182 RYAEQHALAWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRD 224


>gi|119897207|ref|YP_932420.1| putative tRNA(Ile)-lysidine synthetase [Azoarcus sp. BH72]
 gi|226695534|sp|A1K3X8|TILS_AZOSB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|119669620|emb|CAL93533.1| putative tRNA(Ile)-lysidine synthetase [Azoarcus sp. BH72]
          Length = 448

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 11/189 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +  A+SGG DS+ + + L + L  R FG    +A+ V H L   A    ++ + +C+   
Sbjct: 24  LCCALSGGVDSV-VTLDLLTRLQPR-FG-FTLTAVHVHHGLSPHADAWAQFCARLCAARG 80

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +A   V       Q GL +AAR  R+A +      +    ++  H  DDQ ETV  R 
Sbjct: 81  LTLAIRRVEVPTDTGQ-GLESAARARRHAELV----ALPCDWLVFGHHQDDQAETVLFRL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+G     +   + +   + RP L   R  I ++     + W ED SN D RF
Sbjct: 136 FRGSGLRGLGAMAAVEPGQHAMPGKL-RPLLDIGRAGIVAYARAAGLEWIEDESNADCRF 194

Query: 200 ERVRVRRFV 208
            R  +R  V
Sbjct: 195 TRNALRHKV 203


>gi|254247829|ref|ZP_04941150.1| PP-loop [Burkholderia cenocepacia PC184]
 gi|124872605|gb|EAY64321.1| PP-loop [Burkholderia cenocepacia PC184]
          Length = 473

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 23/227 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122
           A   V +     +RL +A    S +   P+    G+ A ARE RYA + E  +      +
Sbjct: 69  ADAWVAHAEGQAARLGVAFE--SMRVDVPRDSGLGIEATARERRYAALDEMGERHGVAAL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
             A   DDQ ETV ++  R     G G++G+           +++   RP LR  R  + 
Sbjct: 127 WLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSIERVRPLLRLLRAQLE 181

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +  Q  ++W +D SN D R+ R  +R  V    L AL +    F+D
Sbjct: 182 RYAEQHALAWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRD 224


>gi|320101607|ref|YP_004177198.1| tRNA(Ile)-lysidine synthetase [Isosphaera pallida ATCC 43644]
 gi|319748889|gb|ADV60649.1| tRNA(Ile)-lysidine synthetase [Isosphaera pallida ATCC 43644]
          Length = 517

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 9/132 (6%)

Query: 81  RIAHS----VVSWKNSKPQTGLMAAA---REARYALISEHAKTINATLIMTAHTFDDQLE 133
           R+AH+    VV  + S P  G+  A    R AR   ++  A    A  ++ AHT DDQ E
Sbjct: 116 RLAHALGWPVVVERWSDPPQGIAPAEAPLRAARLEFLARVASHHQARAVVLAHTRDDQAE 175

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV  R  R    +G+G  G+         + + RP L   R  +R +L      W +DP+
Sbjct: 176 TVLQRVLRGCGPRGLG--GIPPRRRLTQGVDLLRPLLEVPRACLRDWLTAIGQPWHDDPT 233

Query: 194 NTDDRFERVRVR 205
           NTD    R  +R
Sbjct: 234 NTDQHRTRAWIR 245


>gi|282890463|ref|ZP_06298986.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499460|gb|EFB41756.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 247

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A+SGG DS+ LL  L ++ S R F   +  A+ V       A   + Y+  +C+RL 
Sbjct: 38  IAIALSGGKDSLALLFLLKAI-SGRGFPPFELFAVHVHGAFSCGAGVNLDYLRAICTRLE 96

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +     +         +RE R  L+ E AK++ AT I   H  DD  +T+ M    
Sbjct: 97  IPFLMRESTQTLESLECYGCSRE-RRRLLFEAAKSVGATTIAFGHHRDDSAQTLLM---- 151

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           +   K    + +    + +  + I RP +    ++I +F  Q  
Sbjct: 152 NLLHKAEFAANLPKLHMREYGVTIIRPLIYVAEKEISTFAEQHG 195


>gi|310779129|ref|YP_003967462.1| tRNA(Ile)-lysidine synthetase [Ilyobacter polytropus DSM 2926]
 gi|309748452|gb|ADO83114.1| tRNA(Ile)-lysidine synthetase [Ilyobacter polytropus DSM 2926]
          Length = 446

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 24/214 (11%)

Query: 3   LSPIESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  IE VR FV    LV     IL+  SGG DS+ L  AL   L  +   K++ +   ++
Sbjct: 1   MEVIERVREFVLRNDLVGSGEKILLGFSGGPDSVFLFEAL---LDLKEEFKLEIAIAHIN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSW------KNSKPQTGL--MAAAREARYALIS 111
           H LR    DE     + C +L   + +  +      K    Q G+    A R  RY    
Sbjct: 58  HLLR---GDESDGDEEFCRQLAEKNGIKYYVKKADIKKYSRQHGIGEEEAGRSIRYDFFY 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + +K   A  +  AH  DDQ+ET   R  R     G  L G+ + I    +++I RP   
Sbjct: 115 KISKEWGADKVALAHNKDDQVETFLFRMMR-----GTSLEGL-EGIPVRRDIFI-RPLSE 167

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
             ++DI  +L    I +  D SN ++ + R  +R
Sbjct: 168 VYKKDILGYLDSNKIEYRIDSSNLENTYTRNSIR 201


>gi|17228427|ref|NP_484975.1| hypothetical protein all0932 [Nostoc sp. PCC 7120]
 gi|61216693|sp|Q8YYB8|TILS_ANASP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|17130278|dbj|BAB72889.1| all0932 [Nostoc sp. PCC 7120]
          Length = 342

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ L+  L  +     +   +      DH  R  ++    +V ++     
Sbjct: 26  LLVAVSGGQDSLCLIKLLLDLQPKWGW---ELGIAHCDHRWRADSQANADHVKNLAENWG 82

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           ++  + +   +KP     A ARE RY  +S  A+  N   I+T HT  D+ ET+     R
Sbjct: 83  VSFYLET--ATKP-VNSEATAREWRYQALSAIAQAHNYQYIVTGHTASDRAETLLYNLMR 139

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GL  +        N+ + RP L   R+    F  +  +   ED +N D ++ R
Sbjct: 140 GTG--ADGLQALTWQRPLTENILLVRPLLEITRKQTEQFCQEFQLPIWEDSTNQDLKYAR 197

Query: 202 VRVRR 206
            R+R+
Sbjct: 198 NRIRQ 202


>gi|329119473|ref|ZP_08248158.1| tRNA(Ile)-lysidine synthase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464406|gb|EGF10706.1| tRNA(Ile)-lysidine synthase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 441

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 30/238 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I  A+SGG DS+   + LH++   +     + SA+ V H L   A   + +  D C  L 
Sbjct: 22  IEAALSGGLDSV---VLLHTLAQLQDSLNAELSAVHVHHGLHAQADCWLDFCRDYCEHLG 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V          G+ AAAR+ARY   +      +A ++  AH  DDQ ET ++ + R
Sbjct: 79  IPLRVEKVTVRPAGQGIEAAARQARYQAFARS----SADILAAAHHADDQTETFFLAALR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               + +        +  +  + I RP L   R ++ ++  +  + +  DP+N D  + R
Sbjct: 135 GGGLRALAAMPELRPLAENPAVHIWRPLLPHTRAELAAYAAEHRLDYITDPANADPAYLR 194

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R+R        H    ++++ Q                 L  H+R+ +A+ QD L +
Sbjct: 195 NRLR--------HDGLPRLRRIQ---------------PQLDAHIRAAVALLQDELAV 229


>gi|283852225|ref|ZP_06369498.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. FW1012B]
 gi|283572451|gb|EFC20438.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. FW1012B]
          Length = 606

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 80/211 (37%), Gaps = 18/211 (8%)

Query: 6   IESVRFFVRSLVYPAHIL------VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++  +F VR     A  L      VA SGG DS+ LL  L  +     F   +  A  +D
Sbjct: 35  LDVAKFLVRDCGLDAGTLRGATWLVACSGGPDSLVLLQILLLLAPRLGF---RLEAAHLD 91

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115
           H LR  +  E   V   C    +   +    V+  +   + GL  A R ARY   ++   
Sbjct: 92  HGLRPGSGAEAARVRAFCRDRDVPCHLRRVDVADVSRTRKLGLEDAGRAARYGFFADLLA 151

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +   H  +D  E   MR  R     G G   +      D    + RP L   R 
Sbjct: 152 ERPGAFVALGHQLNDLAEDQLMRLTR-----GTGWPALGGMAAVDPARRLVRPLLLTPRR 206

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           DI +F     +    DP+N D  F R R+R+
Sbjct: 207 DIEAFAAALGLPVVHDPTNDDPAFLRNRLRQ 237


>gi|226363729|ref|YP_002781511.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4]
 gi|254789041|sp|C1BA63|TILS_RHOOB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226242218|dbj|BAH52566.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4]
          Length = 325

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 65/151 (43%), Gaps = 10/151 (6%)

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           VDH L+  + D     +     L  A + V   +     GL AAAR+ARY  +     T 
Sbjct: 58  VDHRLQRGSADVADGAAARARTLGCASAEVLPVDVTGSGGLEAAARQARYEALDAGRGT- 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               ++  HT DDQ ETV +   R     G  + GM     YD + W  RP L  RR   
Sbjct: 117 --RPVLLGHTLDDQAETVLLGLSR--GSGGRSIWGMSP---YD-SPW-GRPLLGVRRAVT 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           R    +  +   EDP N+   F RVR+R  V
Sbjct: 168 RQACTELGLDPHEDPHNSSPDFVRVRLRTEV 198


>gi|153951323|ref|YP_001398742.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938769|gb|ABS43510.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 321

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 16/196 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + SL+     L+A S GSDS  L   L          KI F  + +++  R+ +  E   
Sbjct: 7   ILSLLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++   L+    +      + Q+     AR+ RY    +     +   ++ AH  +DQ 
Sbjct: 60  AKELA--LKFHKKIFIKYAPEFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHHLNDQF 117

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCE 190
           E   M+  R     G GL+ +     Y+   N  + RP L   +++I SFL +++I +  
Sbjct: 118 EWFLMQLSR-----GAGLAEILGMQEYEQRSNYTLLRPLLFISKDEISSFLKEKDIFYFH 172

Query: 191 DPSNTDDRFERVRVRR 206
           D SN ++++ R  +R+
Sbjct: 173 DESNENEKYFRNYIRK 188


>gi|296158958|ref|ZP_06841786.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. Ch1-1]
 gi|295890833|gb|EFG70623.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. Ch1-1]
          Length = 476

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 97/225 (43%), Gaps = 19/225 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE+V F +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  IEAVGFSLSRLSATARIAIAFSGGVDSSVLLDA-----AVRVAGASRCVALHVHHGLSAH 68

Query: 66  AKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           A   + +  D  +R R     A  VV  +++     + AAAR+ARY ++     +     
Sbjct: 69  ADAWLAHC-DAFARERGVEFAAERVVVSRDTG--VSVEAAARDARYRVLEGMCASRGVAT 125

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSF 180
           +  A   DDQ ETV +  Q        GL+ M    L    +    RP L   R  +  +
Sbjct: 126 LWLAQHADDQAETVLL--QLLRGAGLAGLAAMAPEYLPAKASATRVRPLLHLLRAQLEQY 183

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
             +R + W +D SN D R+ R  +R  V    + AL +    F+D
Sbjct: 184 ASERALRWIDDESNADTRYARNALRHDV----MPALAVHFPGFRD 224


>gi|241956978|ref|XP_002421209.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36]
 gi|223644552|emb|CAX41370.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36]
          Length = 479

 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 30/214 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VA+SGG DSM L   L       S  + +  AI++DH  R  +  E   V +   
Sbjct: 21  PKKVAVALSGGPDSMLLTWLL-------SQCQFEIYAITIDHKYRTESSREALAVHERVK 73

Query: 79  RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              + H + S       +          ARE RY  +++        ++   H  DDQLE
Sbjct: 74  NWNLNHIIKSLDYPAGVDPTKLNNFEEVAREKRYEAMAQVCYEKEIPVLFLGHHRDDQLE 133

Query: 134 TVYMRSQRDYAEKGMGLSGMC-------------DTILYDL--NLWISRPFLRCRREDIR 178
           T   R Q + +    GL+G               ++ L++    + I RPF    ++DI 
Sbjct: 134 TFIQRLQGNSS--IFGLAGTHKVSPLPISRDLSPESTLFNQASQVRILRPFWDYDKQDIL 191

Query: 179 SFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDI 211
                 NI++  DP+N D    R   +R  + D+
Sbjct: 192 ETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDV 225


>gi|268316527|ref|YP_003290246.1| tRNA(Ile)-lysidine synthetase [Rhodothermus marinus DSM 4252]
 gi|262334061|gb|ACY47858.1| tRNA(Ile)-lysidine synthetase [Rhodothermus marinus DSM 4252]
          Length = 461

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 90/212 (42%), Gaps = 22/212 (10%)

Query: 7   ESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E VR F+ S  L+ P   ++V VSGG DSM LL  L  +        + +     D    
Sbjct: 4   ERVRRFIESEALLQPGQRVVVGVSGGVDSMVLLEVLRRLGYRPVVAHVNYRLRGAD---- 59

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG---LMAAAREARYALISEHAKTINAT 120
            +  DE   V   C R R+   V    + K +TG   + A AR+ RYA     A      
Sbjct: 60  -SDADEA-LVRRFCRRHRLPLRVAR-IDLKVRTGGRAIQATARQVRYAFFRRVALREGID 116

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC----DTILYDLNLWISRPFLRCRRED 176
           ++  AH  DDQ ET+ +   R     G GL G+        L   N+W+ RP L   R +
Sbjct: 117 VVAVAHQHDDQAETLLLNLVR-----GSGLEGLLGMRPKRRLSRENVWLVRPLLPVSRAE 171

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           I ++     I W ED SN    + R  +R  V
Sbjct: 172 IEAWARAEGIPWREDVSNASLHYRRAVIRHEV 203


>gi|108773198|ref|YP_635739.1| hypothetical protein RF62 [Chara vulgaris]
 gi|122243769|sp|Q1ACK8|TILS_CHAVU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|77157854|gb|ABA61895.1| hypothetical protein RF62 [Chara vulgaris]
          Length = 330

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L+    IL+AVSGG DS   +  L+ +L  R   + +   ++ DH   + ++    YVS 
Sbjct: 21  LLSKQKILIAVSGGQDS---IFLLNLLLQLRFHWEWEIGIVNCDHMWNQFSQTASLYVSQ 77

Query: 76  VCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +  ++ + +   +S    + +      AR  RY L    A   + T+I+TAHT  D++ET
Sbjct: 78  LACQMNLNYYQCISPSFYRKE----EKARSWRYKLFQRIAYLHDYTIIITAHTASDRVET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCDTI----LYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ++         KG GL G+        +Y   + + RP L   R ++     Q  I    
Sbjct: 134 LFYN-----LFKGSGLHGLHSLTWKRQIYKKRIHLVRPLLSTTRGELSQIFKQIQIPLYL 188

Query: 191 DPSNTDDRFERVRVR 205
           D +N + +  R R+R
Sbjct: 189 DSTNLNVKIYRNRIR 203


>gi|52353974|ref|NP_048910.2| hypothetical protein PBCV1_A554/556/557L [Paramecium bursaria
           Chlorella virus 1]
 gi|34482010|dbj|BAC84999.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
 gi|52221432|gb|AAC96914.2| similar to MesJ cell cycle protein [Chlorobium tepidum],
           corresponds to accession number AAG12421 [Paramecium
           bursaria Chlorella virus 1]
          Length = 498

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 86/201 (42%), Gaps = 21/201 (10%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V P  I +++SGG DSM L   L  +   R F   K +   V++  R  A DE  +V+D 
Sbjct: 195 VKPGEITMSLSGGVDSMTLFHILDGL---RGFYGYKMNVAMVNYTNRACAYDEEYFVTDW 251

Query: 77  CSRLRIAHSV--VSWKNSKP------QTGLMAAAREARYALISEHAKTI-NATLIMTAHT 127
            + L    SV  +   N KP      +T      R+ RY       KTI +   +   H 
Sbjct: 252 ANWLGYPISVRRIEEINRKPCIDADIRTLYETYTRKVRYNTY----KTISHGAFVAMGHN 307

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD LE +          K   L+GM DT++    +   RP L   ++DI  +    NI 
Sbjct: 308 KDDCLENILQNICS--GHKYDNLNGM-DTVVVQDGIKFFRPLLGVSKDDIIEYARGHNIP 364

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           +   P++T   F+R  VR  V
Sbjct: 365 YL--PNSTPAHFKRGMVRNSV 383


>gi|15829251|ref|NP_326611.1| hypothetical protein MYPU_7800 [Mycoplasma pulmonis UAB CTIP]
 gi|61216719|sp|Q98PE3|TILS_MYCPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|14090195|emb|CAC13953.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 286

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 18/186 (9%)

Query: 23  LVAVSGGSDSMGLLIAL--HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+AVSGG DSM LL     H ++              V++  R ++K + + V D C + 
Sbjct: 3   LIAVSGGPDSMLLLDVFKHHDIV-----------VAHVNYNKRNSSKRDQKIVEDYCFKN 51

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   +++  + + +      AR+ R+       +  N   I+ AH  DD +ET  +  Q
Sbjct: 52  NIKLEILNLTDYEVKGNFHDWARKKRFDFFKLVYEKYNCDEILLAHHKDDFVETFLI--Q 109

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           ++   K +  S       + +N  I+RPF+ +  +  I   L  + I + +D +N ++ +
Sbjct: 110 KNQKRKPLYWSIKSKNFNFGMN--INRPFIHKYWKNQILKILDNKQIFFGQDETNKENIY 167

Query: 200 ERVRVR 205
            R ++R
Sbjct: 168 LRNKIR 173


>gi|284162492|ref|YP_003401115.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012489|gb|ADB58442.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631]
          Length = 308

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 24/132 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A+SGG DS+ L   LH  LS R    ++  AI+VD  +       V+    + S L 
Sbjct: 51  IAIALSGGKDSVTLTYVLHKFLSKRR--DVELFAITVDEGIEGYRPPTVKIARKITSELG 108

Query: 82  IAHSVVSWK--------------NSKPQT--GLMAAAREARYALISEHAKTINATLIMTA 125
           I H +VS+K              + KP T  G+       R  L+++ A+ + AT + T 
Sbjct: 109 IEHIIVSFKDYFGMTLDEMVKLGDKKPCTYCGVF------RKYLLNKTAREMGATKLATG 162

Query: 126 HTFDDQLETVYM 137
           H  DD+++T+ +
Sbjct: 163 HNLDDEVQTILL 174


>gi|325518591|gb|EGC98254.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. TJI49]
          Length = 303

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 31/231 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGAALSGVPSDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   V +     +RL +A   +  +  +    G+ A+ARE RYA +    +   A  +  
Sbjct: 69  ADAWVAHAEATAARLGVAFDAMHVEVPRDSGLGIEASARERRYAALDAMCERHGAAALWI 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC----------RR 174
           A   DDQ ETV ++  R     G G++G+             RP   C           R
Sbjct: 129 AQHADDQAETVLLQLLR-----GAGIAGLAAMAPR------YRPDGACVERVRPLLRLLR 177

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
             +  +   R ++W +D SN D R+ R  +R  V    L AL +    F+D
Sbjct: 178 AQLERYAAGRELAWIDDESNGDTRYARNALRIDV----LPALAVHFPGFRD 224


>gi|332662835|ref|YP_004445623.1| tRNA(Ile)-lysidine synthase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331649|gb|AEE48750.1| tRNA(Ile)-lysidine synthase [Haliscomenobacter hydrossis DSM 1100]
          Length = 449

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 25/194 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           L+AVSGG DS+        VL+D  +   I F+   ++  LR E +  + R+V  +  R 
Sbjct: 23  LLAVSGGKDSV--------VLADLFYCSGIPFAIAHINFQLRGEESDGDERFVKALAKRC 74

Query: 81  RI------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +      A +       K  T +  AAR  RY  + +   T N   I+TAH  +D +ET
Sbjct: 75  EVECFTMLADTKAYGAEHKLSTQM--AARTIRYTWLEQTRATHNLDYIVTAHHLNDTVET 132

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +          KG G+ G     +  +N  + RP L   R+ I ++  Q  ++  ED SN
Sbjct: 133 ILYN-----LAKGSGIKGNLG--IPAINGRVIRPLLFATRKSIDAYYTQEQLAHREDASN 185

Query: 195 TDDRFERVRVRRFV 208
               + R  +R  V
Sbjct: 186 AQVGYARNWIRHQV 199


>gi|28572333|ref|NP_789113.1| hypothetical protein TW171 [Tropheryma whipplei TW08/27]
 gi|61217337|sp|Q83I94|TILS_TROW8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28410464|emb|CAD66850.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
          Length = 407

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 11/133 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---DEVRYVSDVCS 78
           +L+A+SGG DS+  ++    V+  R  G++   A+ VDH L+E +    DEVR  ++  +
Sbjct: 31  VLIALSGGRDSLAAMVIASWVIP-RLNGRV--GAVVVDHGLQENSARIADEVRIRAEQFA 87

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV--- 135
              I    VS   S+   G  A+AR ARYA   +  +   A  I+ AHT DDQ ETV   
Sbjct: 88  LNPILIKRVS--PSRVSAGPEASARIARYAAFYDTLEETKAYAIILAHTLDDQAETVLLG 145

Query: 136 YMRSQRDYAEKGM 148
            MR     + +GM
Sbjct: 146 LMRGSGPSSLRGM 158


>gi|78066850|ref|YP_369619.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. 383]
 gi|77967595|gb|ABB08975.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. 383]
          Length = 473

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 19/225 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGMAPDARISIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   V +     +RL +A   +     +    G+ A ARE RYA + E  +      +  
Sbjct: 69  ADAWVAHAEASAARLGVAFESMHVDVPRDSGLGVEATARERRYAALDEMCERHGVATLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIRSF 180
           A   DDQ ETV ++  R     G G++G+           +++   RP LR  R  +  +
Sbjct: 129 AQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSVERVRPLLRLLRAQLERY 183

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
             Q +++W +D SN D R+ R  +R  V    L AL +    F+D
Sbjct: 184 ATQHDLAWIDDESNHDTRYARNALRIDV----LPALAVHFPGFRD 224


>gi|11466394|ref|NP_038397.1| hypothetical chloroplast RF62 [Mesostigma viride]
 gi|12230820|sp|Q9MUR3|TILS_MESVI RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|7259537|gb|AAF43838.1|AF166114_50 hypothetical chloroplast RF62 [Mesostigma viride]
          Length = 310

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 18/190 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A SGG DS+ L+  L  +    ++       ++ DH   ++++     ++ +   L 
Sbjct: 24  ILIAASGGQDSISLIKILVELQPQWNWD---LGIVNCDHSWNQSSRKGSSQIAQIAQLLN 80

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I  + +V+      Q      ARE RY  I + A +    +I+TAH   D++ET +    
Sbjct: 81  IDFYQIVTCH----QLINEEKAREWRYQKIEDIAFSNKYNVIVTAHNASDRIETFFFNLL 136

Query: 141 RDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R     G  ++G+  ++L+  +L     I RP L   R ++++F+ + ++    D SN  
Sbjct: 137 R-----GTSITGV-QSLLWTRSLSSGINIVRPLLNTTRFELKNFVKEIHLPLWPDTSNQS 190

Query: 197 DRFERVRVRR 206
             F+R R+R+
Sbjct: 191 LFFKRNRIRK 200


>gi|291542480|emb|CBL15590.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Ruminococcus bromii
           L2-63]
          Length = 442

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 22/195 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++VA+SGG+DS  LL    S+   +    +   A  ++H +R  E  +DE  +   +C +
Sbjct: 21  VIVALSGGADSTALLSVFVSL---KEKYNLSIYAAHINHNIRGDEATRDE-NFCKILCKK 76

Query: 80  LRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                 + S       K  K    L    R  RYA   E ++ + A  I TAHT  D  E
Sbjct: 77  FNTELFIKSVDVPTLAKQQKISEEL--CGRNVRYAFFEELSQKLCAK-IATAHTASDNAE 133

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+     R     G  L+G+  + +      I RP +   R DI S+  + N+ +  D +
Sbjct: 134 TLIFNIAR-----GASLTGL--SAIPPKRGNIIRPLIELSRGDIESYCEENNLEYVTDST 186

Query: 194 NTDDRFERVRVRRFV 208
           N  D + R  +R  +
Sbjct: 187 NLADDYTRNYIRHNI 201


>gi|254994427|ref|ZP_05276617.1| hypothetical protein LmonocytoFSL_16702 [Listeria monocytogenes FSL
           J2-064]
          Length = 153

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H + +     K   S   ++H LRE A +E   V   C    
Sbjct: 24  LLVAVSGGPDSLALL---HFLWNSNLVPKEAISVAHINHHLRENAANEQNVVEAFCESQG 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +    V  +    Q G+   AR  RY    +         +  AH  DDQ+ET+ M
Sbjct: 81  IPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILM 140

Query: 138 RSQRDYAEKGMGLSG 152
           R  R  A   +G SG
Sbjct: 141 RLVRGSA--SIGWSG 153


>gi|72163296|ref|YP_290953.1| helix-turn-helix, Fis-type [Thermobifida fusca YX]
 gi|123628619|sp|Q47KU2|TILS_THEFY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|71917028|gb|AAZ56930.1| helix-turn-helix, Fis-type [Thermobifida fusca YX]
          Length = 324

 Score = 53.1 bits (126), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 22/204 (10%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +R L   + +LVA SGG DS+ L  A   V      G ++   ++VDH L+E + 
Sbjct: 14  AVRRALRDLPAGSLVLVACSGGPDSLALAGATAFVAP--RLG-LRAGGVTVDHGLQEGSA 70

Query: 68  DEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           +    V+ +   L      R+  SV       P+    +A     YA + + A    A  
Sbjct: 71  ERADTVAALLRNLGFDPVERV--SVTVGTAGGPEAAARSAR----YAALEKTADVHQAAA 124

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +R  R    +   L+ M       L     RPFL   R  +    
Sbjct: 125 VLLGHTRDDQAETVLLRLARGSGAR--SLAAMATRTGRYL-----RPFLDVDRRTVHEAA 177

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
                    DP NTD  + R RVR
Sbjct: 178 SLMGFEPWSDPHNTDPAYTRSRVR 201


>gi|255527643|ref|ZP_05394503.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|255508656|gb|EET85036.1| PP-loop domain protein [Clostridium carboxidivorans P7]
          Length = 127

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 10/102 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++VAVSGG DSM LL  L+S+   R    I+  A  V+HCLR  E+ KDE  YV + C +
Sbjct: 21  VIVAVSGGPDSMSLLHILYSL---RKQLNIELCAAHVNHCLRGNESDKDE-EYVKEFCEK 76

Query: 80  LRI---AHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTI 117
           L I   + SV   K  K Q     +A R ARY   ++  K I
Sbjct: 77  LNIEFRSKSVDINKIMKMQNISCESAGRNARYDFFNDLKKEI 118


>gi|225378080|ref|ZP_03755301.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM
           16841]
 gi|225210081|gb|EEG92435.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM
           16841]
          Length = 248

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 14/198 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS+ LL A+ ++   R F    FS I++   L     D +  V  +C  L+
Sbjct: 26  IAVGISGGKDSLTLLYAMANL---RRFYPKIFSLIAITVDLGYEGFD-LTPVKLLCEHLQ 81

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + + +VS +      N K +    +   + R   +++  K +    +  AH  DD +ET+
Sbjct: 82  VEYHIVSTEITKIIFNDKNEASPCSLCAKLRKGALNQKIKELGCNKVAYAHHMDDMIETM 141

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +        +G   S    T L  + L + RP +     +++ F  + N+   E+P   
Sbjct: 142 VL----SMIFEGRFYSFSPVTFLDRMELTVIRPMMYVSEAEVKGFRNKYNLPVVENPCPV 197

Query: 196 DDRFERVRVRRFVRDIDL 213
           D   +R   +  VR I+L
Sbjct: 198 DGVTKRQYAKDLVRQINL 215


>gi|71906484|ref|YP_284071.1| PP-loop [Dechloromonas aromatica RCB]
 gi|71846105|gb|AAZ45601.1| PP-loop [Dechloromonas aromatica RCB]
          Length = 323

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 89/214 (41%), Gaps = 19/214 (8%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           P     F    L     + V +SGG DS+ LL     +L+   F   +  AI V H L  
Sbjct: 13  PARVGAFLAARLAPSERLAVGLSGGCDSVVLL----HLLTRLGFAG-RLDAIHVHHGLSP 67

Query: 65  TAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
            A     + +D C+ L +  ++  VS  ++    GL AAAR+ARY++ +E    +    +
Sbjct: 68  NADAWGTFCADYCTGLGVPLTIRHVS-VDTASGLGLEAAARKARYSVFAE----VATDCL 122

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  H   DQ ETV     R     G   +GM     +     +       R E I ++ +
Sbjct: 123 LLGHHRSDQAETVLFNLLRGTGVTGA--AGMPAERQFGRLRLLRPLLASSRNE-IEAYAM 179

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
              ++W +D SN D        R F+R   L AL
Sbjct: 180 SAGLAWIDDESNADVSL----TRNFLRHEALAAL 209


>gi|313884543|ref|ZP_07818304.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620327|gb|EFR31755.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 492

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 7/191 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++ VSGG DSM LL  +  +L+ +     +      +H LR  A  +   V   C   +
Sbjct: 24  LVMGVSGGLDSMVLLDLMIKLLALKENQGKEIIVAHFNHHLRSDADLDASLVESFCHHHQ 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + + +  W+         + AREARY   +       + +++TAH  +D  ET+ +R  R
Sbjct: 84  LTYFIGEWQEPS-HKNTESLAREARYHFFANVLAASQSQVLVTAHHSNDLAETLMIRLIR 142

Query: 142 DYAEKGM-GLSGMCDTIL-YDLNLWIS----RPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             + KG+ G+      IL  D    ++    RP L   + ++  +     + + ED +N+
Sbjct: 143 GTSFKGLAGIRRYSQRILTTDQGQGVATDLVRPLLSISKAELLDYAEHFKLEYREDSTNS 202

Query: 196 DDRFERVRVRR 206
                R RVR+
Sbjct: 203 SRHHLRNRVRQ 213


>gi|294625512|ref|ZP_06704140.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600181|gb|EFF44290.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 468

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 23/191 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +L+A SGG DS    + LH + +   +      A+ V H L   A     +    C 
Sbjct: 48  PGPVLLAYSGGMDSS---VLLHLLAAASRYRHAGLRALHVHHGLHADADAWAAHCQRTCD 104

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L++   +V  + ++  +GL   A        +     I    +  AH  DDQ ET  +R
Sbjct: 105 ALQVPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLLR 163

Query: 139 SQRDYAEKGMGL--------SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           + R    +G+          SGM         LW  RP L   R D+ ++     + W +
Sbjct: 164 ALRASGPEGLAAMRPQRPFASGM---------LW--RPMLAHARADLLAYAHAHGLRWID 212

Query: 191 DPSNTDDRFER 201
           DPSN D   +R
Sbjct: 213 DPSNADPHHDR 223


>gi|256372668|ref|YP_003110492.1| tRNA(Ile)-lysidine synthetase [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009252|gb|ACU54819.1| tRNA(Ile)-lysidine synthetase [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 306

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 75/176 (42%), Gaps = 29/176 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V VSGG+DS+GL   L       +FG  +  AI VDH LR  +  E   V+   + L 
Sbjct: 37  VRVGVSGGADSLGLAALL-------AFGGKRVLAIHVDHGLRPGSAREGADVARQLAPLG 89

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I  SV+  +    P   L A AR AR   + + A+         AHT DDQ ETV +   
Sbjct: 90  I--SVLERRVRVIPGPNLEARARSARLGALGDAAR---------AHTMDDQAETVLLNLL 138

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R     G GL G+       L+     P L  RR ++        +    DP N D
Sbjct: 139 R-----GSGLVGIGAMEPGPLH-----PALGLRRSELARVCEAAGLVPLVDPMNQD 184


>gi|117927411|ref|YP_871962.1| tRNA(Ile)-lysidine synthetase [Acidothermus cellulolyticus 11B]
 gi|117647874|gb|ABK51976.1| tRNA(Ile)-lysidine synthetase [Acidothermus cellulolyticus 11B]
          Length = 398

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 95/211 (45%), Gaps = 10/211 (4%)

Query: 3   LSP-IESVRFFVRS----LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           LSP I +VR  VR+    L   A +L A SGG DS+  L A  +  + R    ++  A++
Sbjct: 12  LSPAIAAVRHAVRTCLADLPAGALVLAACSGGPDSL-ALAAALAFEAPRRRPALRAGAVT 70

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           +DH L+  + +  R ++     L +    +         G  AAAR ARYA + E A   
Sbjct: 71  IDHQLQPGSAERARQLARFLGELGLDPVEIRAVQVGRDGGPEAAARAARYAALDEVAAQC 130

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  ++ AHT DDQ ETV +   R    +   ++GM +   +       RP L   R   
Sbjct: 131 GAAAVLLAHTLDDQAETVLLGLTRGSGLR--SIAGMPER--FGPADRYRRPLLGIPRSVT 186

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           R       + + +DP N D  F R R+R  V
Sbjct: 187 RRACRDAGLPFWDDPQNHDPAFTRSRLRHRV 217


>gi|213969135|ref|ZP_03397274.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato T1]
 gi|213926133|gb|EEB59689.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato T1]
          Length = 455

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  +L+ L + L+ R+       AI V H L+  A     +   VC  L +A
Sbjct: 40  VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 97

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  K  +P   +  AAR+ARYA  +E  +     +++T    DDQ ET+  R  R  
Sbjct: 98  FESVRVK-VEPDASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 154

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M +         ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 155 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 211

Query: 204 VRRFV 208
           +R  V
Sbjct: 212 LRSQV 216


>gi|57238476|ref|YP_179607.1| PP-loop family protein [Campylobacter jejuni RM1221]
 gi|61216392|sp|Q5HSX8|TILS_CAMJR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|57167280|gb|AAW36059.1| PP-loop family protein [Campylobacter jejuni RM1221]
 gi|284926661|gb|ADC29013.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315058908|gb|ADT73237.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 321

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 24/200 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + +L+     L+A S GSDS  L   L          KI F  + +++  R+ +  E   
Sbjct: 7   ILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59

Query: 73  VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             ++  +    H  +  K++ K Q+     AR+ RY    +     +   ++ AH  +DQ
Sbjct: 60  AKELALKF---HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHHLNDQ 116

Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            E   M+  R     G GL+   GM  C+      N  + RP L   +++I SFL +++I
Sbjct: 117 FEWFLMQLSR-----GAGLAEILGMQECEK---RQNYTLLRPLLFISKDEISSFLKEKDI 168

Query: 187 SWCEDPSNTDDRFERVRVRR 206
            +  D SN ++++ R  +R+
Sbjct: 169 FYFHDESNENEKYFRNYIRK 188


>gi|301383970|ref|ZP_07232388.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato
           Max13]
 gi|302064144|ref|ZP_07255685.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato
           K40]
 gi|302134071|ref|ZP_07260061.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 445

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  +L+ L + L+ R+       AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  K  +P   +  AAR+ARYA  +E  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVK-VEPDASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M +         ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|285019212|ref|YP_003376923.1| cell cycle protein [Xanthomonas albilineans GPE PC73]
 gi|283474430|emb|CBA16931.1| putative cell cycle protein [Xanthomonas albilineans]
          Length = 445

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 74/187 (39%), Gaps = 15/187 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA +L+  SGG DS    + LH++     + +    A+ V H L   A     +   +  
Sbjct: 22  PAPVLLGFSGGLDST---VLLHALAQQPHYRQRGLRAVHVHHGLHPDADAWAMHCQQMSV 78

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L +   V+  +  + +   + AA                  L +  H  DDQ ET  +R
Sbjct: 79  ALAVPLQVLRVQVPRDRGDGLEAAARQARRAAFAQVLAHGEWLALAQHR-DDQAETFLLR 137

Query: 139 SQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + R     G+     LSG  D  L+       RP L   R  + ++  Q  + W +DPSN
Sbjct: 138 ALRASGPDGLAAMQPLSGFADGKLW-------RPLLTLPRSALHAYAQQHALRWIDDPSN 190

Query: 195 TDDRFER 201
            D  F+R
Sbjct: 191 ADPGFDR 197


>gi|326792451|ref|YP_004310272.1| tRNA(Ile)-lysidine synthetase [Clostridium lentocellum DSM 5427]
 gi|326543215|gb|ADZ85074.1| tRNA(Ile)-lysidine synthetase [Clostridium lentocellum DSM 5427]
          Length = 457

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 24/192 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++ VSGG DSM LL   H   + +   ++      + H +RE+A  +   V + C    
Sbjct: 25  LILGVSGGMDSMMLL---HYFYTYKEVYQVSLKVAHIHHGIRESADLDAALVEETCRAYH 81

Query: 82  IA---HSV-VSWKNSKPQTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLE 133
           I    H+  +     + +       RE RY    +L++  AK      I+TAH  +DQ E
Sbjct: 82  IPFYRHNCNIKALAKQKKCSEEEIGREERYNFFISLLNPGAK------IVTAHNMNDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R    KG+G  G+           I RP L   R++I S+     + +  D +
Sbjct: 136 TMMMRFFRGTDIKGLG--GILPK-----RGQIIRPLLDVTRKEIESYCKVHQVPFRHDET 188

Query: 194 NTDDRFERVRVR 205
           N    + R ++R
Sbjct: 189 NFMPIYTRNKIR 200


>gi|28868757|ref|NP_791376.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851996|gb|AAO55071.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 455

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  +L+ L + L+ R+       AI V H L+  A     +   VC  L +A
Sbjct: 40  VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 97

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  K  +P   +  AAR+ARYA  +E  +     +++T    DDQ ET+  R  R  
Sbjct: 98  FESVRVK-VEPGASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 154

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M +         ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 155 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 211

Query: 204 VRRFV 208
           +R  V
Sbjct: 212 LRSQV 216


>gi|28493557|ref|NP_787718.1| cell cycle protein MesJ-like protein [Tropheryma whipplei str.
           Twist]
 gi|61217341|sp|Q83MT2|TILS_TROWT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28476599|gb|AAO44687.1| cell cycle protein MesJ-like protein [Tropheryma whipplei str.
           Twist]
          Length = 415

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 11/133 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---DEVRYVSDVCS 78
           +L+A+SGG DS+  ++    V+  R  G++   A+ VDH L+E +    DEVR  ++  +
Sbjct: 31  VLIALSGGRDSLAAMVIASWVIP-RLNGRV--GAVVVDHGLQENSARIADEVRIRAEQFA 87

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV--- 135
              I    VS   S+   G  A+AR ARYA   +  +   A  I+ AHT DDQ ETV   
Sbjct: 88  LNPILIKRVS--PSRVSAGPEASARIARYAAFYDALEETKAYAIILAHTLDDQAETVLLG 145

Query: 136 YMRSQRDYAEKGM 148
            MR     + +GM
Sbjct: 146 LMRGSGPSSLRGM 158


>gi|68487427|ref|XP_712412.1| hypothetical protein CaO19.2137 [Candida albicans SC5314]
 gi|68487717|ref|XP_712269.1| hypothetical protein CaO19.9684 [Candida albicans SC5314]
 gi|46433643|gb|EAK93076.1| hypothetical protein CaO19.9684 [Candida albicans SC5314]
 gi|46433797|gb|EAK93226.1| hypothetical protein CaO19.2137 [Candida albicans SC5314]
          Length = 483

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 91/233 (39%), Gaps = 36/233 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VA+SGG DSM L   L       S  K +  AI++DH  R  +  E   V +   
Sbjct: 21  PKKVAVALSGGPDSMLLTWFL-------SQCKFEIYAITIDHKYRPESSREALSVYERVK 73

Query: 79  RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              + H + S       +          AR  RY  +++     +  ++   H  DDQLE
Sbjct: 74  NWNLNHIIKSLDYPAGVDPTKLNNFEEIARGKRYEAMAQVCYDKDIPVLFLGHHRDDQLE 133

Query: 134 TVYMRSQRDYAEKGMGLSGMCDT----ILYDLN-----------LWISRPFLRCRREDIR 178
           T   R Q +      GL+G        I  DL+           + I RPF    ++DI 
Sbjct: 134 TFIQRLQGN--SSIFGLAGTHKVSPLPISKDLSPTSALFNQTSQVRILRPFWDYDKQDIL 191

Query: 179 SFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDI------DLHALYLKMKKFQ 224
                 NI++  DP+N D    R   +R  + DI        H+ YL + K Q
Sbjct: 192 ETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDIIPAKNNQSHSPYLLIDKSQ 244


>gi|257063279|ref|YP_003142951.1| tRNA(Ile)-lysidine synthetase [Slackia heliotrinireducens DSM
           20476]
 gi|256790932|gb|ACV21602.1| tRNA(Ile)-lysidine synthetase [Slackia heliotrinireducens DSM
           20476]
          Length = 361

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 32/225 (14%)

Query: 6   IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ VR  +  RS+V     +L+ VSGGSDS  L  A   +  +   G +    + V+H L
Sbjct: 8   IDRVRTLIDDRSMVRTGSPVLLMVSGGSDSTALAYAAAELRDEGRLGTVTM--LHVNHKL 65

Query: 63  RETAKD-EVRYVSDVCSRLRIA--HSVVSWKNSKPQTGLM-AAAREARYALISEHAKT-- 116
           R  A D +  +   + + L I      +         G M A ARE RY  + E  ++  
Sbjct: 66  RGEASDGDAAFTRRLSAHLGIPLFDCEIDVPALLANGGNMEATAREERYRAVREALESTC 125

Query: 117 ------INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM--CDTILYDLNLWISRP 168
                 +      T HT DD++E+ +MR+       G G  G+     + +     I RP
Sbjct: 126 SHTGYDLEDASAFTGHTADDRVESYFMRTI-----VGTGPGGLRAMSHVSWVNGCRICRP 180

Query: 169 FLRCRREDIRSFLLQRNIS--------WCEDPSNTDDRFERVRVR 205
            L C R+++R ++  R  +        W ED +N D    R  VR
Sbjct: 181 LLECSRDELREYIRSRPGAIADELGNLWREDATNGDTDHFRSYVR 225


>gi|319945971|ref|ZP_08020220.1| tRNA(Ile)-lysidine synthetase [Streptococcus australis ATCC 700641]
 gi|319747779|gb|EFW00024.1| tRNA(Ile)-lysidine synthetase [Streptococcus australis ATCC 700641]
          Length = 424

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 89/203 (43%), Gaps = 26/203 (12%)

Query: 9   VRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++F  +  ++ +H  +L+A+SGG DSM LL  L+        G I      V+H  R  A
Sbjct: 6   LQFCQKEGLFESHQKVLLALSGGVDSMTLLDWLYHY--QHQLG-IDLVLAHVNHHQRVEA 62

Query: 67  KDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
             E R + ++       L++AH    +  S+        AR+ RY    +  K    + I
Sbjct: 63  DQEERGIRELAEAKHLPLKVAHFSGPFSESR--------ARQFRYDFFEKVMKEEACSAI 114

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAH  DDQ ET+ MR  R    +   L G+     +   + I RP L  +++D      
Sbjct: 115 VTAHHMDDQAETILMRVIR--GSRPRHLKGIPLKQPFGQGMLI-RPLLHFKKKDFPE--- 168

Query: 183 QRNISWCEDPSNTDDRFERVRVR 205
              I   ED SN    + R R+R
Sbjct: 169 ---IFHYEDKSNRSLDYFRNRIR 188


>gi|168005786|ref|XP_001755591.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693298|gb|EDQ79651.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVAVSGG DS+ LL   H + S R         +  DH    +++ +  ++S V + LR
Sbjct: 181 ILVAVSGGQDSICLL---HMLASLRDQWGWLLGVVYCDHRWSSSSRKQGSHISQVAASLR 237

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I +      +  P  GL   AR  RY ++   A     T I+TAHT  D++ET+     R
Sbjct: 238 INYYQAVTTSPVPSEGL---ARTWRYGILQRIALRHGFTSIVTAHTASDRVETLLYNLFR 294

Query: 142 DYAEKGMGLSGM 153
                G GL G+
Sbjct: 295 -----GSGLHGL 301


>gi|61216635|sp|Q886M6|TILS_PSESM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 445

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  +L+ L + L+ R+       AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  K  +P   +  AAR+ARYA  +E  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVK-VEPGASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M +         ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|284931702|gb|ADC31640.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. F]
          Length = 287

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+ VSGG DS+ LL        DR   +IK  A  +++  R TA  +   VSD C + +I
Sbjct: 10  LIGVSGGPDSIYLL--------DRYQDQIKV-ACHINYNKRPTALHDQLIVSDYCLKNKI 60

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              ++S   S +        AR+ RY               + AH  DD LET  M+  +
Sbjct: 61  PLEILSVSPSYQYHKNFQDQARKIRYDFFLSTGLKYQVDQCLIAHHKDDFLETAIMQYDK 120

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           +  +   GL    D+    L ++  RP L   +++I S+L +  I +  D SN    ++R
Sbjct: 121 NQEQLFYGLHQ--DSSYQSLKIF--RPLLNLWKDEILSYLEKDKIVYGVDESNFLLTYQR 176

Query: 202 VRVR 205
            ++R
Sbjct: 177 NKIR 180


>gi|330801783|ref|XP_003288903.1| hypothetical protein DICPUDRAFT_79671 [Dictyostelium purpureum]
 gi|325081048|gb|EGC34579.1| hypothetical protein DICPUDRAFT_79671 [Dictyostelium purpureum]
          Length = 569

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 12/199 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC--- 77
           +++++ SGGSDS+ LL  L   +  +   +I    I+ DH ++     E+  +       
Sbjct: 125 NVILSCSGGSDSILLLYLLKQWIK-KGKKEITVRVITFDHKVQAEDIGEICKIIKKIIGR 183

Query: 78  SRLRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           S    +H V++  N KP   + GL    R+ RY  +   ++     ++       D  E+
Sbjct: 184 STKVFSHEVITL-NEKPLEFKNGLQQKLRDQRYKSLVSISEDNKENIVFYGTNLGDSFES 242

Query: 135 VYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
              R     ++ G+ GLSG+ + +    N  + RP +   + DI +F   + I +  DP+
Sbjct: 243 FIHRVS---SKSGLDGLSGIREELKLSQNTTVYRPLIEISKNDITAFCNGKKIGFYSDPT 299

Query: 194 NTDDRFERVRVRRFVRDID 212
           N D  F R   R  +   +
Sbjct: 300 NLDLSFTRNLNRSLINQFE 318


>gi|15672001|ref|NP_266175.1| hypothetical protein L1002 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|61216729|sp|Q9CJH4|TILS_LACLA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|12722856|gb|AAK04117.1|AE006241_6 cell cycle protein MesJ [Lactococcus lactis subsp. lactis Il1403]
          Length = 423

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 26/207 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGL---LIALHSVLSDRSFGKIKFSAISV 58
           FL  ++   +F +     + IL+A+SGG DSM L   L  L  VL       I+     +
Sbjct: 8   FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDLKEVLG------IELGLAHI 57

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           +H LRE +K E   + ++ ++L++   V  +     +      AR+ RY    +     N
Sbjct: 58  NHGLREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGEN 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
             +++TAH   D +ETV MR  +        L G+ D   +     I RP L+  +E++ 
Sbjct: 114 YNILLTAHHQGDLVETVLMR--QITGRPLRSLQGIADRQPFAGGQLI-RPLLKFTKEELD 170

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
           +       ++ ED +N    + R R+R
Sbjct: 171 A------QTYYEDSTNQGLDYFRNRIR 191


>gi|296537148|ref|ZP_06899091.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957]
 gi|296262524|gb|EFH09206.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957]
          Length = 236

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 77/192 (40%), Gaps = 13/192 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKI---KFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           V VSGG  S+ L       L  R F +    +  A+  DH LR  +  E  +     +  
Sbjct: 42  VGVSGGPHSLAL------ALLARDFARPLGGRVLALVADHGLRAESAAEAEWTRRTLAAQ 95

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I+  V+        + +   AR+AR A +           ++      DQ ETV  R+ 
Sbjct: 96  GISARVLRLDLPG-GSAVQERARQARLAALLGACAAEGLPFLLLGQHAGDQAETVLFRAL 154

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G  LSG+           I RP L      + + L  R +S   DPSN D RF 
Sbjct: 155 RGSGATG--LSGIAPRRAA-AEAVILRPLLATPPIRLEALLAARGLSPLRDPSNADPRFA 211

Query: 201 RVRVRRFVRDID 212
           RVR+R+ + D D
Sbjct: 212 RVRLRQALADAD 223


>gi|296166689|ref|ZP_06849114.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897954|gb|EFG77535.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 320

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+  L A+ + L          +A+ VDH L+  + D    V++      +A
Sbjct: 30  VALSGGPDSL-ALTAVAAQLR-------PTTAVIVDHGLQPGSGD----VAETARAQAVA 77

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V+ +  +   G       A            +   ++  HT DDQ ETV +   R  
Sbjct: 78  VGCVAAQVVRVHVGNEGGPEAAARTARYAALSAYHGGPVLLGHTLDDQAETVLLGLGR-- 135

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G G+  +     YD   W  RP L  RR    +   +  ++  +DP NTD RF R R
Sbjct: 136 ---GSGVRSIAGMRPYDPP-W-GRPLLGVRRALTHAACAELGLTAWQDPHNTDRRFTRTR 190

Query: 204 VRRFV 208
           +R+ V
Sbjct: 191 LRQEV 195


>gi|16127457|ref|NP_422021.1| hypothetical protein CC_3227 [Caulobacter crescentus CB15]
 gi|221236270|ref|YP_002518707.1| PP-loop family cell cycle control ATPase [Caulobacter crescentus
           NA1000]
 gi|61216723|sp|Q9A3H7|TILS_CAUCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|13424911|gb|AAK25189.1| hypothetical protein CC_3227 [Caulobacter crescentus CB15]
 gi|220965443|gb|ACL96799.1| PP-loop family cell cycle control ATPase [Caulobacter crescentus
           NA1000]
          Length = 408

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 18/184 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + V  SGG DS+ LL    +VL           A+ VDH L+  +             
Sbjct: 20  APLAVGFSGGGDSLFLL---KTVLDWARPLDRPVLALVVDHQLQPQSTAWTAEAVAKARA 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L  A   ++W + KP+TGL AAAR AR+AL++  A+   A +++  HT  D  E V MR+
Sbjct: 77  LGAAALGLTWTDQKPRTGLPAAARRARHALLATAAREAGARVLILGHTASDLAEGVAMRA 136

Query: 140 Q-------RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           +       R +A   +   G          L++ RP L   R +IR  L +   +W +DP
Sbjct: 137 EGSSVSNPRAWAPSPVWPEGR--------GLFVLRPLLTLTRAEIRDALTREGETWLDDP 188

Query: 193 SNTD 196
           +N D
Sbjct: 189 ANLD 192


>gi|294495611|ref|YP_003542104.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666610|gb|ADE36459.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
          Length = 255

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 12/128 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI VA+SGG DS  LL  L  +L +  F  +K +AI+VD  +    ++ + Y  ++ + L
Sbjct: 52  HIAVALSGGKDSSVLLYILAKILPE--FEGVKLTAITVDEGIPNYREETLTYAQELATFL 109

Query: 81  RIAHSVVSWKNS--KPQTGLMAAAREA--------RYALISEHAKTINATLIMTAHTFDD 130
            I H +VS++ +   P   L+     +        R  ++ +   +++   + T H+ DD
Sbjct: 110 NIEHRIVSFRENFGAPLPDLLKKRNVSACTLCGVLRRKILEQETFSMDVPKLATGHSLDD 169

Query: 131 QLETVYMR 138
           + ET  M 
Sbjct: 170 EAETAMMN 177


>gi|51210035|ref|YP_063699.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
           var. liui]
 gi|61216496|sp|Q6B8L1|TILS_GRATL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50657789|gb|AAT79774.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
           var. liui]
          Length = 320

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 11/142 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++L+ P  IL+A+SGG DS+ L+  +    +    F +I++  I +DH  R  +K  +++
Sbjct: 18  KNLIKPLSILIALSGGKDSLCLVKLIEDFNNTYNHFSRIEY--IYIDHQWRSDSKQNIKH 75

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + +  S     ++   ++ +K +    A  R  RY  I  HA   +  +I+T H   DQ+
Sbjct: 76  LLNYISITN--NNTYIYQINKMEIS-EANMRNIRYQAIVRHAIQNSHDIIVTGHNQTDQV 132

Query: 133 ETVYMRSQRDYAEKGMGLSGMC 154
           ET  +   R     G GL G+ 
Sbjct: 133 ETFLLNLMR-----GTGLEGLS 149


>gi|212529304|ref|XP_002144809.1| PP-loop family protein [Penicillium marneffei ATCC 18224]
 gi|210074207|gb|EEA28294.1| PP-loop family protein [Penicillium marneffei ATCC 18224]
          Length = 633

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I +AVSGG DSM L      +   R    +   A  VDH  RE + +E   V+   S
Sbjct: 42  PRRIGIAVSGGPDSMALAYLCRQLQITRPELNLDVKAFVVDHKFREESTEEAHMVTKWLS 101

Query: 79  RLRIAHSVVS--W---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L I   V++  W   ++ K Q      AR  RY  +           ++  H  DD +E
Sbjct: 102 NLDIQSEVLTLDWLPGESPKKQMAFETLARTKRYQALGIACLENRLNTLLIGHHLDDNVE 161

Query: 134 TVYMR 138
           T  +R
Sbjct: 162 TGLLR 166


>gi|296131746|ref|YP_003638993.1| tRNA(Ile)-lysidine synthetase [Thermincola sp. JR]
 gi|296030324|gb|ADG81092.1| tRNA(Ile)-lysidine synthetase [Thermincola potens JR]
          Length = 471

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 14/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V VSGG DS+ L   L  +  +    ++      ++H  R + A+ +   V+ +  +L
Sbjct: 21  VVVGVSGGPDSVALAHILTRLAKE---FRLTIHIGHLNHMFRGKEAELDAASVARLAEKL 77

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +  +V    V    S+ +    A AR  RYA   + A  + A  I T H  DDQ ETV 
Sbjct: 78  GLPCTVERIDVPAYLSEHRVSAQAGARYIRYAFFEKLADEVGANRIATGHHADDQAETVL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   R     G G+SG+          +I RP +   R++I ++    ++    D SN  
Sbjct: 138 MNFLR-----GSGVSGLTGIPPVRQGKYI-RPLIEVSRQEIENYCRYFDLPVRFDASNAK 191

Query: 197 DRFERVRVR 205
           + + R RVR
Sbjct: 192 NIYLRNRVR 200


>gi|296809924|ref|XP_002845300.1| PP-loop family protein [Arthroderma otae CBS 113480]
 gi|238842688|gb|EEQ32350.1| PP-loop family protein [Arthroderma otae CBS 113480]
          Length = 717

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +AVSGGSDSM L      ++S      +   A  VDH  R  +  E   V+D   +L 
Sbjct: 42  IGLAVSGGSDSMALAYLCSRLVSPDFIPGLDLKAYIVDHKFRPESSREAHLVADRIEKLG 101

Query: 82  IAHSVVS--WKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   V++  W   +  T  G    AR  RY  + +     +   ++  H  DD +ET  M
Sbjct: 102 IQSKVLTIPWPAGETLTKNGFETQARMLRYQALGKACAADSIRALLLGHHQDDNVETALM 161

Query: 138 RSQRDYAEKGM 148
           R  + + + G+
Sbjct: 162 RVSKGHRKLGL 172


>gi|332981200|ref|YP_004462641.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON]
 gi|332698878|gb|AEE95819.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON]
          Length = 475

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 19/213 (8%)

Query: 2   FLSPIES-VRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
            LS +++ V  ++R   ++ P   I+V VSGG DS  LL   H ++S R     +     
Sbjct: 6   ILSSVQNRVMLYIRKYKMIQPGQKIVVGVSGGPDSSALL---HVLMSLRGKLDAELIVAH 62

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISE 112
           V+H +R + + ++ +YV  +  R+ ++    H  V     +       A R  RY    +
Sbjct: 63  VEHGMRAQQSVEDAQYVVSMAQRMGLSVYVKHCDVPSYAKEHGLSQEQAGRIIRYDFFRQ 122

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +      I  AH  DD  ET+ +   R     G GL G+    +  +   I RP L  
Sbjct: 123 ICRYRGCNSIAVAHNKDDNAETILLHILR-----GSGLDGLVG--IRPVRGDIIRPLLDV 175

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
            R DI ++     ++   D +N D  + R R+R
Sbjct: 176 SRTDIEAYCAAAGMNPRRDYTNNDPSYMRNRIR 208


>gi|119493467|ref|ZP_01624136.1| hypothetical protein L8106_08621 [Lyngbya sp. PCC 8106]
 gi|119452711|gb|EAW33890.1| hypothetical protein L8106_08621 [Lyngbya sp. PCC 8106]
          Length = 338

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 13/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM L+  L  +     +     +    DH  R  +     Y+  +    +
Sbjct: 30  LLVAVSGGQDSMSLIKLLLDLQPKWGWD---LAIAHCDHRWRSDSGANADYIEQLADSWQ 86

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           ++    +     P+T   A AR  RY ++SE A T N   ++T HT  D+ ET+     R
Sbjct: 87  LSFYRQT-AQKIPKTE--ADARHWRYQVLSEIALTHNYDYVVTGHTKSDRAETLLYNLIR 143

Query: 142 DYAEKGMG-------LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                G+        +    +    + N+ + RP L   R     F   + +   ED +N
Sbjct: 144 GSGSDGLQALAWKRPIDIEANVNHTNHNIGLVRPMLEILRSQTGQFCQDQQLKIWEDSTN 203

Query: 195 TDDRFERVRVR 205
            D  + R R+R
Sbjct: 204 EDLSYARNRIR 214


>gi|146296231|ref|YP_001180002.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409807|gb|ABP66811.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 455

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+  SGG DSM LL  ++ +  +     +  +   ++H LR+ A ++  +V D C R  
Sbjct: 23  VLIGCSGGIDSMVLLDCIYRLKDEYE---LDITVAHLNHMLRQEAIEDELFVIDTCKRYN 79

Query: 82  IA--HSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I      +  +  K +  L    A R ARY    E   ++  + I+  H  +D +ET ++
Sbjct: 80  IKCITRSIDVRKIKEERKLSEEEAGRLARYNFFYELVNSLGLSKILLGHNKNDVVETFFL 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G GL G+    +  +   ++RP +   RE+I  +  +  I +  D +N   
Sbjct: 140 NLFR-----GSGLDGLAS--IPPVRDIVARPLIYMSREEIEEYAEENGIKYVIDKTNFSS 192

Query: 198 RFERVRVR 205
           +++R  VR
Sbjct: 193 KYKRNVVR 200


>gi|302390614|ref|YP_003826435.1| tRNA(Ile)-lysidine synthetase [Thermosediminibacter oceani DSM
           16646]
 gi|302201242|gb|ADL08812.1| tRNA(Ile)-lysidine synthetase [Thermosediminibacter oceani DSM
           16646]
          Length = 471

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 15/189 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSR- 79
           +LV VSGG DS  + +    +     FG I  +   ++HC R    DE   +V D+  + 
Sbjct: 23  VLVGVSGGPDS--VCLLHLLLRHREEFG-ISLAVAHLNHCFRGQESDEDETFVRDLAGQW 79

Query: 80  -LRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L      V       +TGL    AAR  RYA      +   A  +  AH  +D+ ETV 
Sbjct: 80  GLPFYGEKVDVPAYIKKTGLSPEDAARRVRYAFFERVRRETGAGKVALAHNSNDREETVL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   R     G GL G+   I    + +I RP +   R+ I  +L +  I +  D +N  
Sbjct: 140 MNIFR-----GTGLEGLV-GIEAVRDHYI-RPLIEVERDSIEDYLKREGIPYRIDSTNLQ 192

Query: 197 DRFERVRVR 205
             + R ++R
Sbjct: 193 TFYYRNKLR 201


>gi|326317608|ref|YP_004235280.1| tRNA(Ile)-lysidine synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374444|gb|ADX46713.1| tRNA(Ile)-lysidine synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 349

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 11/106 (10%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRS 179
           I  A   DDQ+ETV +   R     G G++G+     +     +   RP L     DIR+
Sbjct: 151 IALAQHADDQVETVLLALSR-----GAGVAGLAAMPAFWRRGGMDWHRPLLDVAAADIRT 205

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
           +L  R   W EDP+N D+R+ R R+R  +    L AL     +F+D
Sbjct: 206 WLTARGEGWVEDPTNADERYTRNRIRARL----LPALEAAFPQFRD 247


>gi|326405617|gb|ADZ62688.1| tRNA Ile-lysidine synthase [Lactococcus lactis subsp. lactis CV56]
          Length = 423

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++   +F +     + IL+A+SGG DSM L   L+ +   +    I+     ++H 
Sbjct: 8   FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDL---KEVLGIELGLAHINHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LRE +K E   + ++ ++L++   V  +     +      AR+ RY    +     N  +
Sbjct: 61  LREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGENYNI 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH   D +ETV MR  +        L G+ D   +     I RP L+  +E++ + +
Sbjct: 117 LLTAHHQGDLVETVLMR--QITGRPLRSLQGIADRQPFASGQLI-RPLLKFTKEELDAQI 173

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
                 + ED +N    + R R+R
Sbjct: 174 ------YYEDSTNQGLDYFRNRIR 191


>gi|157953048|ref|YP_001497940.1| hypothetical protein NY2A_B744L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123275|gb|ABT15143.1| hypothetical protein NY2A_B744L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 504

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V P+ I +++SGG DSM L   L  +   R F   K +   V++  R  A DE  +V+D 
Sbjct: 195 VKPSEITMSLSGGVDSMTLFHILDGL---RGFYGYKMNVAMVNYTNRACAYDEEYFVTDW 251

Query: 77  CSRLRIAHSV--VSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            + L    SV  +   N KP      +T      R+ RY   + +    +   +   H  
Sbjct: 252 ANWLGYPISVRRIEEINRKPCIDANIRTLYETYTRKVRY---NTYKSISHEAFVAMGHNK 308

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD LE +          K   L+G+   +  D N +  RP L   +++I ++    NI +
Sbjct: 309 DDCLENILQNICS--GHKYDNLAGIVTVVKQDDNNFF-RPLLDVSKDEIIAYARYHNIPY 365

Query: 189 CEDPSNTDDRFERVRVRRFV 208
              P++T   F+R  VR FV
Sbjct: 366 L--PNSTPAHFKRGMVRNFV 383


>gi|78187463|ref|YP_375506.1| MesJ protein [Chlorobium luteolum DSM 273]
 gi|78167365|gb|ABB24463.1| MesJ protein [Chlorobium luteolum DSM 273]
          Length = 332

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 39/204 (19%)

Query: 22  ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75
           +LVAVSGG+DSM LL   IA+ + L            ++V HC   LR    D       
Sbjct: 30  VLVAVSGGADSMALLTLFIAVQAALG---------CTLAVVHCNFGLRGAESDADEAFVR 80

Query: 76  VCSRL-----------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            C+RL            +A SV + ++ + +      AR  RY    E  +    T + T
Sbjct: 81  ECARLMGLPCFVRQFDTLASSVAARRSVEEE------ARVLRYGYFQEIIEREGYTKVAT 134

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H   D  ET+     R     G+ L  +    +      I RP L   R +I  +L Q+
Sbjct: 135 GHHVGDNAETMLFNLFR-----GVTLPSLRG--IRSRRGHIIRPLLFMHRAEIEEYLKQQ 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFV 208
              +  D +N DDR++R  +R  V
Sbjct: 188 GTGYRTDATNADDRYDRNFIRNRV 211


>gi|322700481|gb|EFY92236.1| PP-loop family protein [Metarhizium acridum CQMa 102]
          Length = 653

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 22/166 (13%)

Query: 2   FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---- 54
           F   +E+V   RF       P  + +A+SGG DSM +     +++  R+   IK +    
Sbjct: 20  FRDAVEAVCPPRFPAVRYARPRRVALAISGGVDSMAMAFLFSNLI--RTHRGIKIADNPT 77

Query: 55  ----AISVDHCLRETAKDEVRYVSDVCSRL--RIAHSVVSWKN-----SKPQT--GLMAA 101
                + VDH LR  +  E   V+    +L  +     ++WK+       P +   + + 
Sbjct: 78  EGAFGVIVDHRLRPESTLEAAEVAQELKKLGLKAVTKPLNWKDVSRHGQDPSSLPNIESV 137

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147
           AR  RY ++    + +NAT +  AH  DDQ ETV MR    +  +G
Sbjct: 138 ARTKRYRMLGSTCRYLNATSLFFAHHRDDQYETVLMRYMSGHQYRG 183


>gi|86609808|ref|YP_478570.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123501245|sp|Q2JJ74|TILS_SYNJB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|86558350|gb|ABD03307.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 327

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 33/243 (13%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-- 70
           + L++P   +LVA SGG DS  LL  L  +     +       I V HC    + DE   
Sbjct: 18  QQLLHPGQRLLVAFSGGQDSFCLLQILRDLQPRWGW------QIFVLHCDHRWSADETEC 71

Query: 71  -RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            R++     +  + H+V   + + P     A AR  RY  + + A+T + + ++  HT  
Sbjct: 72  ARFLQGWLQQQGLPHAV---ETADPIRRDEAGARAWRYQQLEKWARTWDCSAVVMGHTAS 128

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--------WISRPFLRCRREDIRSFL 181
           D+ ET      R     G G +G+  ++ +  +L         + RP L   R +   F 
Sbjct: 129 DRAETFLWNLLR-----GTGAAGL-SSLDWQRHLDDRDPTSAQVVRPLLGLYRWETEQFC 182

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            Q  +    D SN D    R R+R  V        YLK      L   +N A  +L  ++
Sbjct: 183 QQHQLPVWPDRSNQDLAHGRNRLRLEVMP------YLKQHFNPQLEAALNRAATLLQAEH 236

Query: 242 LTV 244
             V
Sbjct: 237 ELV 239


>gi|306828586|ref|ZP_07461780.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis ATCC 6249]
 gi|304429194|gb|EFM32280.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis ATCC 6249]
          Length = 425

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 24/199 (12%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--- 66
           F++   +  H  +L+A+SGG DSM L   L +    +  G I+     V+H  R  +   
Sbjct: 10  FLQKEYFKKHSKVLLALSGGLDSMFLFQLLSTY--QKELG-IELILAHVNHKQRSESDWE 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           ++E+R ++D  + L I  +  S   S+        ARE RY    +  K   AT ++TAH
Sbjct: 67  ENELRKLAD-AAELPIYITSFSGDFSE------VRAREFRYDFFRKIMKEAGATALVTAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ MR  R    +   L+G+ ++ + D  + + RP L   + D         I
Sbjct: 120 HADDQVETILMRLIR--GSRLRHLTGIKESQVVD-GIELIRPLLPFHKTDFPP------I 170

Query: 187 SWCEDPSNTDDRFERVRVR 205
              ED +N ++ + R R+R
Sbjct: 171 FHFEDQTNRENSYFRNRIR 189


>gi|281356157|ref|ZP_06242650.1| tRNA(Ile)-lysidine synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281317526|gb|EFB01547.1| tRNA(Ile)-lysidine synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 813

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 23/186 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKI---KFSAISVDHCLRETAKDEV-----R 71
             + V  SGG+DS   L      L  R F +I   + +AI  DH LR            R
Sbjct: 16  GRLFVGFSGGADSTAAL------LVARRFQEIFHYRLTAIHFDHGLRGAESAAEAEAAQR 69

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  +     R+    +S     P  GL + AR AR  +  E  +    + ++  H   D+
Sbjct: 70  FARNCAIEFRLVRLALS-----PGPGLESRARAARLDVWKELVRENPGSAVILGHHAGDR 124

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-WCE 190
            E + +R  R       GL+ M      D N+   RP L   R +I  FL +  IS W  
Sbjct: 125 AENLLLRLAR--GSNATGLTSMRSRSEVD-NVIFLRPLLGFARTEIEEFLHENGISEWAR 181

Query: 191 DPSNTD 196
           D SN +
Sbjct: 182 DSSNAE 187


>gi|291515519|emb|CBK64729.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Alistipes shahii WAL
           8301]
          Length = 447

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 29/194 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           IL+ VSGG DSM ++++L +    R         + V HC   LR  E+ +DEV  V D 
Sbjct: 23  ILLTVSGGVDSM-VMLSLFTRCGYR---------VGVAHCNFQLRGAESDEDEV-LVEDE 71

Query: 77  CSRLRIA--HSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +   A  +     +    +TG  +  AAR  RYA     ++    T I  AH  DD +
Sbjct: 72  AKKHGAAFYNRRFETRAEMERTGESMEMAARRLRYAWFDALSREHGYTAIAIAHHADDSI 131

Query: 133 ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ET ++   R    +G+ G+S     ++        RP L   R++I  + +Q  I + ED
Sbjct: 132 ETFFINLLRGTGLRGLTGISTQVGKVI--------RPLLFASRKEILEYAVQNRIPFRED 183

Query: 192 PSNTDDRFERVRVR 205
            SN   ++ R ++R
Sbjct: 184 SSNRSTKYLRNKIR 197


>gi|221632326|ref|YP_002521547.1| putative bifunctional protein tilS/hprT [Thermomicrobium roseum DSM
           5159]
 gi|221156484|gb|ACM05611.1| putative bifunctional protein tilS/hprT [Thermomicrobium roseum DSM
           5159]
          Length = 695

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 16/200 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS+GLL +L   L+ R         + +DH L+ ++         + S L 
Sbjct: 66  IIVGFSGGPDSLGLLWSLQH-LAHRGLAPTPIP-VHIDHGLQSSSSTMAERAIALGSELG 123

Query: 82  IAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +   VV      W   K + GL A AR ARYA +++ A+    + I   HT DDQ ETV 
Sbjct: 124 LVVRVVQVNVSLWPEYK-EGGLEAGARAARYAALAQVARAEGTSWITVGHTRDDQAETVL 182

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN--------LWISRPFLRCRREDIRSFLLQRNISW 188
           +R  R     G+        +   L+        + + RP LR RR  +R+ +    +  
Sbjct: 183 LRLLRGAGLDGLAAMRPVTELRIPLDPLHREFASIRLIRPLLRIRRSVVRAAVELLGLQP 242

Query: 189 CEDPSNTDDRFERVRVRRFV 208
            EDP+N    +ER  +RR V
Sbjct: 243 LEDPTNLLLSYERNAIRRRV 262


>gi|85713119|ref|ZP_01044153.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica
           OS145]
 gi|85693067|gb|EAQ31031.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica
           OS145]
          Length = 447

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 7/194 (3%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           LV    ++VA+ GG+DS  +L  L+     ++  + ++ AI +DH     +    + +  
Sbjct: 19  LVPGQQLVVALGGGADSQTVLDCLNRF--RQANPQYEYLAIHLDHHFHPQSPAWAKTIKG 76

Query: 76  VCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                 +A H        K +    A  RE RY  ++E   T +  +I+     +DQ+ET
Sbjct: 77  SVESYGMASHFEDLIFIEKNRVSKEAMGRERRYQRLAE--LTADNAIILLGQHRNDQIET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             ++ +R    +G  L+ M +   +     + RP L   ++ I  +  +  ++W ED +N
Sbjct: 135 FLLQLKRGSGPRG--LASMAEVQPFVGQRKLVRPLLEVSKQAILKYAHEHQLTWIEDNTN 192

Query: 195 TDDRFERVRVRRFV 208
            D R ER  +R  V
Sbjct: 193 YDTRIERNYLRHKV 206


>gi|281490518|ref|YP_003352498.1| tRNA(Ile)-lysidine synthetase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374336|gb|ADA63869.1| tRNA(Ile)-lysidine synthetase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 423

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 26/207 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGL---LIALHSVLSDRSFGKIKFSAISV 58
           FL  ++   +F +     + IL+A+SGG DSM L   L  L  VL       I+     +
Sbjct: 8   FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDLKEVLG------IELGLAHI 57

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           +H LRE +K E   + ++ ++L++   V  +     +      AR+ RY    +     N
Sbjct: 58  NHGLREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGEN 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
             +++TAH   D +ETV MR  +        L G+ D   +     I RP L+  +E++ 
Sbjct: 114 YNILLTAHHQGDLVETVLMR--QITGRPLRSLQGIADRQPFAGGQLI-RPLLKFTKEELD 170

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
           + +      + ED +N    + R R+R
Sbjct: 171 AQI------YYEDSTNQGLDYFRNRIR 191


>gi|322392415|ref|ZP_08065875.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780]
 gi|321144407|gb|EFX39808.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780]
          Length = 425

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 18/201 (8%)

Query: 7   ESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E +  F+    +  H  +++A+SGG DSM L   L +    +  G I+     V+H  R 
Sbjct: 5   EFLNHFLEKGYFKHHSRVVLALSGGLDSMFLFHLLSTY--QKELG-IELFLAHVNHKQRP 61

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            + +E   +  +  ++ +   V  +     +    A AR+ RY  + +  +   AT ++T
Sbjct: 62  ESDNEEYELRKLAEQVGVPIYVAHFTGDFSE----ANARQFRYEFLKKVMRQTVATALVT 117

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ ET++MR  R    +   LS + +   +D    I RP L   ++D        
Sbjct: 118 AHHADDQAETIFMRLIR--GVRLQHLSAIKERQEFDKGELI-RPLLSFYKKDFPE----- 169

Query: 185 NISWCEDPSNTDDRFERVRVR 205
            I   ED +N ++ + R RVR
Sbjct: 170 -IEHFEDATNKENSYFRNRVR 189


>gi|282600859|ref|ZP_06257767.1| tRNA(Ile)-lysidine synthase [Subdoligranulum variabile DSM 15176]
 gi|282571163|gb|EFB76698.1| tRNA(Ile)-lysidine synthase [Subdoligranulum variabile DSM 15176]
          Length = 464

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 15/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           ++ A SGG+DSM LL+ L     D    +I+  A  V+H +R   A  +  +V+  C + 
Sbjct: 32  VIAACSGGADSMALLLFLLRRRRDL---EIEVLATHVNHGIRGVNAIADANFVTAFCRKN 88

Query: 81  RIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +    +  V      PQ      AR  RY    + A    A  I TAHT  DQ+ET+  
Sbjct: 89  GVELFLYDAVKEGVQIPQQPSEEWARGLRYGWFDQLAVQEEA-FIATAHTMSDQVETILF 147

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G+ GM    +     +  RP L   R +  ++      ++ +D +N  D
Sbjct: 148 RMAR-----GTGVHGMAG--IPPRRGYYIRPCLCLTRGETEAYCTALGQNYVQDETNAQD 200

Query: 198 RFERVRVR 205
            + R R+R
Sbjct: 201 TYARNRIR 208


>gi|295109538|emb|CBL23491.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Ruminococcus obeum
           A2-162]
          Length = 467

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 21/197 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSR 79
           ++  VSGG DSM +L  L  +  D    +     + V+H +R  E  +D+ + V  +C  
Sbjct: 25  VIAGVSGGPDSMVMLDILRRLQGDY---ECSLRVVHVNHGIRGKEALRDQ-KTVQKICEE 80

Query: 80  LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT----LIMTAHTFDDQ 131
            +I   V S+      ++ + G   A R  R A   E  K   ++     I  AH  +D 
Sbjct: 81  WKIPCCVYSYDVPRLAAEWKMGSEEAGRMVRRAAFEEEKKKCTSSDRKIRIALAHNKNDV 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+     R     G G+ G+    L  +N    RP L   R +I  ++ +  I    D
Sbjct: 141 AETMLHHLAR-----GSGIRGL--AALKPVNGEFIRPVLCLERNEIVDYIKETGIPSMTD 193

Query: 192 PSNTDDRFERVRVRRFV 208
            SN +D + R R+R  +
Sbjct: 194 SSNLEDDYTRNRIRHHI 210


>gi|291535600|emb|CBL08712.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Roseburia intestinalis
           M50/1]
          Length = 501

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 27/203 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78
           ++V +SGG+DS+ LL+ L  +       +I ++  AI V+H +R E ++ +  +V ++C 
Sbjct: 21  VIVGLSGGADSVALLLVLLELRQ-----RIGYTLLAIHVEHGIRGEESRKDAAFVEELCR 75

Query: 79  R----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-----LIMTAHTFD 129
           +     RI    V    +    G+  AAR  RY    + A+ +  +      I  AH  +
Sbjct: 76  QKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIALAHHAN 135

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           D  ETV  +  R     G G+ GMC      +L D ++ I RP L   R  I  +L +  
Sbjct: 136 DNAETVLFQMAR-----GSGVHGMCGMHPKRVLGD-DILIVRPLLCVSRGQIEEYLKKCG 189

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
             +  D +N D  + R R+R  +
Sbjct: 190 QEYRTDGTNLDINYSRNRIRHHI 212


>gi|171688800|ref|XP_001909340.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944362|emb|CAP70472.1| unnamed protein product [Podospora anserina S mat+]
          Length = 773

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 30/210 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS------VDHCLRETAKDEVRYVSD 75
           I +A+SGG DSM L      + +   + K+    +S      V+H LR+   +EV  V  
Sbjct: 43  IALAISGGVDSMALAYLSTKIRTTDHWFKVADHPVSNPVAFVVNHDLRKGMVEEVDQVIK 102

Query: 76  VCSRLRIAHSV--VSW-----KNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAH 126
               L+I   V  + W     K   P T   +   AR+ RY  +   A+      ++TAH
Sbjct: 103 ALRGLKIFAYVAKIDWAQVLGKGVDPNTVPNIETLARQQRYRKLGTFARNCKTMSLLTAH 162

Query: 127 TFDDQLETVYMRSQRDYAEKGM-GLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQR 184
             DDQ ET+ MR    +  +G+ G+    D    YD++      F+    +D RS    +
Sbjct: 163 HEDDQYETILMRLLSGHGYRGLRGMRPATDIPECYDMHGIYQSGFI----DDQRS----K 214

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           +  W   P    +R ER ++ R +RD D H
Sbjct: 215 HPVWNIYP----NRAERTKILRALRD-DFH 239


>gi|113953772|ref|YP_729309.1| MesJ-like protein [Synechococcus sp. CC9311]
 gi|113881123|gb|ABI46081.1| possible MesJ homolog [Synechococcus sp. CC9311]
          Length = 331

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 7/189 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A+SGG DSM LL  L  +     +    F     DH   + +      + + C    
Sbjct: 31  LLIALSGGQDSMALLGLLLGLQHLHHW---HFQLWHGDHGWHDQSAATASELKEWCQGQE 87

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +   +N++  TG  A+AR  RY  ++  ++      ++TAHT  D+ ET+ ++  R
Sbjct: 88  LDLQIS--RNTRDHTGTEASARSWRYQELAALSQQFCCRTVLTAHTASDRAETLLLQLAR 145

Query: 142 DYAEKGMG-LSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G+G L  +      D N   + RP L   R+D         +    DPSN +  F
Sbjct: 146 GTDLAGLGSLRPIRPLQNNDPNGTRLVRPLLTFSRDDTTQICQDLQLPVWLDPSNANPAF 205

Query: 200 ERVRVRRFV 208
            R R+R  V
Sbjct: 206 SRNRIRNDV 214


>gi|257066129|ref|YP_003152385.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii DSM 20548]
 gi|256798009|gb|ACV28664.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii DSM 20548]
          Length = 456

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 79/188 (42%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS  L+ AL  +  +  F  I      ++H  R+ A  +   V +   +  
Sbjct: 23  IIVGASGGPDSQFLIYALMELRKEMDFTII---LAHLNHLHRKEANFDESLVEETAEKFA 79

Query: 82  IA--HSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           ++      S      + G+ +  A R  RY    E  K    + I  AH  DDQ ETV M
Sbjct: 80  LSFRKKAASMDAYAKKYGISSEDAGRRLRYEFFREIQKEYPKSKIAIAHNLDDQAETVLM 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G G+ G+   + Y  N  I RP L  ++  I  +L    I +  D +N   
Sbjct: 140 RIIR-----GTGVEGLR-AMDY-RNGDIIRPILDIKKAMILDYLNSEQIPYAIDKTNFTT 192

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 193 DYTRNKLR 200


>gi|298246393|ref|ZP_06970199.1| tRNA(Ile)-lysidine synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297553874|gb|EFH87739.1| tRNA(Ile)-lysidine synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 487

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVL-SDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79
           ++VAVSGG+DS+ LL  L S+  S + +  ++     ++H LRE  +  +   V+++   
Sbjct: 22  LVVAVSGGADSLCLLHLLRSLCGSGKRYPTLQLHVAHLNHRLREPVSSQDAAAVAELART 81

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
               + +    +     +    L  AAREARY  +    +      I  AH  DDQ+ET+
Sbjct: 82  WGLPVTLGEEDIQVLAKRDHLSLEEAAREARYRFLR---RVAAGDPIAVAHHQDDQVETL 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +     +  +G G++ M    L      I RP L   R D  ++  Q  ++  ED SN 
Sbjct: 139 VL-----HWIRGGGIASMSG--LQPRQQDIIRPLLIFTRADTLAYCAQHGLTPLEDASNA 191

Query: 196 DDRFERVRVR 205
           D R++R RVR
Sbjct: 192 DLRYQRNRVR 201


>gi|225011777|ref|ZP_03702215.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A]
 gi|225004280|gb|EEG42252.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A]
          Length = 434

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 26/195 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
           IL+A SGG DS        SV++D     ++ FS    +  LR E +  +   V   C  
Sbjct: 21  ILLAHSGGLDS--------SVMADLLVKAQVPFSVAHCNFQLRGEESNSDAGLVKAWCFD 72

Query: 80  LRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             I    V +      K  K  T L  AAR+ RY+   E         ++TAH  +DQLE
Sbjct: 73  NSIPFFSVEFATLEYKKYHKKSTQL--AARDLRYSWFDEIMDGYAFDFLVTAHHLNDQLE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  + + R     G G+SG+      +  L   RP     ++++  +  +  + W ED S
Sbjct: 131 TFLINTTR-----GTGVSGLLGIQEREHLL---RPLRSIPKKELIQYAKEHGVIWNEDSS 182

Query: 194 NTDDRFERVRVRRFV 208
           N  D + R  VR  V
Sbjct: 183 NASDDYLRNEVRHHV 197


>gi|240144373|ref|ZP_04742974.1| tRNA(Ile)-lysidine synthase [Roseburia intestinalis L1-82]
 gi|257203624|gb|EEV01909.1| tRNA(Ile)-lysidine synthase [Roseburia intestinalis L1-82]
          Length = 501

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 27/203 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLR-ETAKDEVRYVSDVCS 78
           ++V +SGG+DS+ LL+ L  +       +I ++  AI V+H +R E ++ +  +V ++C 
Sbjct: 21  VIVGLSGGADSVALLLVLLELRQ-----RIGYTLLAIHVEHGIRGEESRKDAAFVEELCR 75

Query: 79  R----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-----LIMTAHTFD 129
           +     RI    V    +    G+  AAR  RY    + A+ +  +      I  AH  +
Sbjct: 76  QKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIALAHHAN 135

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           D  ETV  +  R     G G+ GMC      +L D ++ I RP L   R  I  +L +  
Sbjct: 136 DNAETVLFQMAR-----GSGVHGMCGMHPKRVLGD-DILIVRPLLCVSRGQIEEYLKKCG 189

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
             +  D +N D  + R R+R  +
Sbjct: 190 QEYRTDGTNLDINYSRNRIRHHI 212


>gi|254574078|ref|XP_002494148.1| hypothetical protein [Pichia pastoris GS115]
 gi|238033947|emb|CAY71969.1| Hypothetical protein PAS_chr4_0708 [Pichia pastoris GS115]
          Length = 483

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 9/146 (6%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           V+ F   L  P  + +++SGG DSM L   L     + + G ++  A++V+H  R+ ++ 
Sbjct: 14  VKIFPHGL--PRRVGISLSGGVDSMALTSLLSRYRDEYNVG-VEIVALTVNHEYRKGSRQ 70

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISEHAKTINATLI 122
           E   V  + + L + H ++  K +     L         AR  RY  I ++    +   +
Sbjct: 71  EAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQHL 130

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM 148
              H  +DQ+ET  +R +++    GM
Sbjct: 131 FLGHQLEDQVETFLLRLKQNSTIFGM 156


>gi|254411176|ref|ZP_05024953.1| PP-loop family [Microcoleus chthonoplastes PCC 7420]
 gi|196181677|gb|EDX76664.1| PP-loop family [Microcoleus chthonoplastes PCC 7420]
          Length = 336

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 30/206 (14%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L+ P+  +LVAVSGG DS+ L+  L  +       K K+  +++ HC       + R+
Sbjct: 21  RQLLAPSRPVLVAVSGGQDSLCLMKLLLDLQP-----KWKWQ-LAIAHC-------DHRW 67

Query: 73  VSDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +D      I     SW      + +   T    AAR+ RY  + + A+T     ++TAH
Sbjct: 68  PADKGLADHIEQVAQSWAIPFYLEIADQVTTSEGAARQWRYQALGKIAQTYQYQYVVTAH 127

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD----LNLWISRPFLRCRREDIRSFLL 182
           T  D+ ETV     R     G G+ G+  ++ +       + + RP L   R +   F+ 
Sbjct: 128 TQSDRAETVLYNLIR-----GTGVDGL-QSLTWQRPLVAGVQLVRPLLEVTRRETGEFVE 181

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV 208
           Q+++    D  N D R+ R R+R+ V
Sbjct: 182 QQHLPVWLDAYNQDLRYARNRIRQEV 207


>gi|15835107|ref|NP_296866.1| hypothetical protein TC0489 [Chlamydia muridarum Nigg]
 gi|270285278|ref|ZP_06194672.1| hypothetical protein CmurN_02488 [Chlamydia muridarum Nigg]
 gi|270289294|ref|ZP_06195596.1| hypothetical protein CmurW_02553 [Chlamydia muridarum Weiss]
 gi|301336674|ref|ZP_07224876.1| hypothetical protein CmurM_02540 [Chlamydia muridarum MopnTet14]
 gi|7190530|gb|AAF39335.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 259

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 12/163 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI VA+SGG DS+ LL+ L ++ S R F ++   AI +       A     Y+S +C ++
Sbjct: 36  HIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKI 94

Query: 81  RIAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++   S+ S ++   P+          R  L+ + AK++ AT +   H  DD ++T  M 
Sbjct: 95  QVPLISIPSPYETENPEC---YTCSRIRRRLLFDAAKSVGATAVAFGHHRDDVIQTALMN 151

Query: 139 SQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF 180
                AE     +GM   + + +  + I RP +    E IR F
Sbjct: 152 LLHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEELIRKF 189


>gi|205356113|ref|ZP_03222880.1| hypothetical protein Cj8421_1495 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345956|gb|EDZ32592.1| hypothetical protein Cj8421_1495 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 321

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 24/200 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + +L+     L+A S GSDS  L   L          KI F  + +++  R+ +  E   
Sbjct: 7   ILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59

Query: 73  VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             ++  +    H  +  K++ K Q+     AR+ RY    +         ++ AH  +DQ
Sbjct: 60  AKELALKF---HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQ 116

Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            E   M+  R     G GL+   GM  C+      N  + RP L   +++I SFL +++I
Sbjct: 117 FEWFLMQLSR-----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDI 168

Query: 187 SWCEDPSNTDDRFERVRVRR 206
            +  D SN ++++ R  +R+
Sbjct: 169 FYFHDESNENEKYFRNYIRK 188


>gi|329896365|ref|ZP_08271464.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC3088]
 gi|328921785|gb|EGG29156.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC3088]
          Length = 448

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 88/197 (44%), Gaps = 8/197 (4%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           +F +R +  P   L+ VSGG+DS+ L+  + ++        +  + I +DH L   + + 
Sbjct: 12  QFLLRYIDAP-RWLLGVSGGADSVALMAFVRALGDAHDIPPV--TVIYIDHGLHPDSANW 68

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              V  V  +L  A    S    +   GL  AAR ARY    +        ++MTAH  D
Sbjct: 69  GVLVERVSKQLSFAFEARSVVVVESGGGLEEAARAARYRAFED--LICEQDVLMTAHHQD 126

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQLET  MR+ R    +  GL  M       + L I RP L   R D+          + 
Sbjct: 127 DQLETFLMRAFRGAGPE--GLRSMLPERSLGVGLLI-RPLLGVARNDLVQIATAIAPDYV 183

Query: 190 EDPSNTDDRFERVRVRR 206
            DPSN D R++R  +R+
Sbjct: 184 LDPSNLDTRYDRGFLRQ 200


>gi|330807798|ref|YP_004352260.1| transcription factor, ExsB family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375906|gb|AEA67256.1| putative Transcription factor, ExsB family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 442

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
            SAI V H L+  A+    +   VC+ L +   VV+    +P   +  AAREARYA    
Sbjct: 54  LSAIHVHHGLQAVAEAWPDHCRSVCAALGVPLDVVT-VQVRPGASVERAAREARYAAFV- 111

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A   +  +++TA   DDQ ET+  R  R    KG+        +     L   RP L  
Sbjct: 112 -AAIHSDEVLLTAQHRDDQAETLLFRLLRGAGVKGLAAMPPQRPLGQGHLL---RPLLDV 167

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
            R ++ ++  Q+ +SW EDPSN D R  R  +R+ V
Sbjct: 168 SRVELEAYARQQGLSWIEDPSNDDHRHARNYLRQRV 203


>gi|114327773|ref|YP_744930.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315947|gb|ABI62007.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis
           CGDNIH1]
          Length = 433

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 157/385 (40%), Gaps = 41/385 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGGSDS+ L +        R    +   A+ VDH LR  +  E +   +     +
Sbjct: 41  VAVAVSGGSDSLALALLAARWQRSRGGSVL---ALVVDHGLRPESAFEAQLTLERLKTQK 97

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   ++     +  + + + AR ARY  +    +      ++  H   DQ ET+++R Q 
Sbjct: 98  IEARLLRLTTLQRGSAIASRARAARYDALIGACRNEGIIDLLLGHHRQDQAETIWIRQQA 157

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
             A   MGL+GM   +    ++ + RP L   +  +R+ +    + W EDPSN      R
Sbjct: 158 GSAV--MGLAGMA-LLREAADIRLLRPLLAFNKASLRNVVRDYGLDWVEDPSNHSPAAGR 214

Query: 202 VRVRRFV-RDIDLHALYLKMKKFQDLRVKVN-NAVAMLIPKYLTVHMRSIIAISQDILNI 259
            + R  V RD       L+M     +  +V    +A  +   ++        +S + L+ 
Sbjct: 215 TQAREVVERDGPQQDQLLEMAHHAAMTRRVQEQTIAQELAATVSFLPEGYALVSGNTLSC 274

Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVVIDRRANFLWI 318
            S     L  V AA+ G       YR     +   + G R     G RV+   R    W+
Sbjct: 275 PS-----LAAVLAAVSGRN-----YRPRHARLTPFQHGLRPMTLEGIRVLPAGRLPGDWL 324

Query: 319 ---TRAVRNLPTLILYPEETTVWDGRYQFQNLSD-------SLIQIGPQS--YRKADVPS 366
                A +  P   +  ++  +WD R++  + S        SL  +G  +  +R  D   
Sbjct: 325 IVREHAAQQAP---IVAKDRGLWDQRFRIHDPSGDAEAKGLSLGALGKDAKLFRSRD--- 378

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA 391
           G+P  I    L ++PS   G+ L+A
Sbjct: 379 GLPSAI----LQTLPSWRHGEKLIA 399


>gi|72383087|ref|YP_292442.1| aromatic amino acid beta-eliminating lyase/threonine aldolase
           [Prochlorococcus marinus str. NATL2A]
 gi|123773751|sp|Q46ID9|TILS_PROMT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|72002937|gb|AAZ58739.1| Aromatic amino acid beta-eliminating lyase/threonine aldolase
           [Prochlorococcus marinus str. NATL2A]
          Length = 326

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 27/209 (12%)

Query: 22  ILVAVSGGSDSMGLLIA------LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           IL+A+SGG DSM LL        LH    +   G  ++ A S      E  +DE++    
Sbjct: 20  ILLAISGGQDSMALLKLIIDLKRLHQWQVEVWHGNHQWHAKS------EETEDELKL--- 70

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-------TLIMTAHTF 128
            C + +I  S  S K  K +      AR+ RY  +   AK +++       T I+T HT 
Sbjct: 71  WCLKNQI--SFHSNKADKKEVANEEKARDWRYKNLIMKAKFLSSKNIHFPCTRILTGHTA 128

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D+ ETV M   R       GL+ + +    + N+ ++RP L   R +        N+  
Sbjct: 129 TDRAETVIMNLAR--GTDLTGLTTLKEQRTIENNIDLTRPLLIFNRNETLEICKDFNLPI 186

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY 217
             DPSN +    R ++R+ +  I L+++Y
Sbjct: 187 WIDPSNENINLTRNKIRKEILPI-LNSIY 214


>gi|283955056|ref|ZP_06372559.1| hypothetical protein C414_000390011 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793423|gb|EFC32189.1| hypothetical protein C414_000390011 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 321

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 22/199 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + SL+     L+A S GSDS  L   L          KI F  + +++  R+ +  E   
Sbjct: 7   ILSLLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++   L+    +      K Q+     AR+ RY    +     +   ++ AH  +DQ 
Sbjct: 60  AKELA--LKFHKKIFIKYAPKFQSNFEKKARDFRYDFFEKICFEQDYDHLILAHHLNDQF 117

Query: 133 ETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           E   M+  R     G GL+   GM  C+      N  + RP L   +++I SFL +++I 
Sbjct: 118 EWFLMQLSR-----GSGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRR 206
           +  D SN ++++ R  +R+
Sbjct: 170 YFHDESNENEKYFRNYIRK 188


>gi|239916682|ref|YP_002956240.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665]
 gi|281414860|ref|ZP_06246602.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665]
 gi|239837889|gb|ACS29686.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665]
          Length = 394

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 10/193 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           LVA+SGG+DS+ L +A   ++  R   ++    A  VDH L ++  D V   +   +R+ 
Sbjct: 69  LVALSGGADSLALALACAVLVGTREGRRLNPIGAAVVDHGL-QSGSDAVAAAAAGVARIL 127

Query: 81  -----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                 +    V+     P+     A REA  A   +      A +++TAHT DDQ E V
Sbjct: 128 GLTPVTVTRVEVARTGDGPEANARRARREALAAAARDAVPGAGAAVVLTAHTADDQAEQV 187

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R    +   L+G+           + RP L   R D  +      ++W EDP N 
Sbjct: 188 LLGLARGSGTR--SLAGIPARGTLPGGAAVVRPLLGLTRADTETICRWAGLTWFEDPHNR 245

Query: 196 DDRFERVRVRRFV 208
           D    R RVR  V
Sbjct: 246 DPALLRSRVRTRV 258


>gi|218439938|ref|YP_002378267.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7424]
 gi|218172666|gb|ACK71399.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7424]
          Length = 323

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSR 79
           ILVAVSGG DS+ LL  L  +     +       +++ HC  +   D     +V  + ++
Sbjct: 26  ILVAVSGGQDSLCLLKLLGDLQPKWEWD------LTIAHCDHQWPTDAGIKDHVQQIANQ 79

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +I   + +  N K      AAAR+ RY  + E AK    + I+T HT  D+ ET     
Sbjct: 80  WKIPFYLKTADNLKETE---AAARKWRYQALIEIAKEQGFSFIVTGHTKSDRAETFLYNL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R       GLS +        N+ + RP L   R +   F  Q  +   ED  N + ++
Sbjct: 137 IRGAGTD--GLSALTWERFLTENIKLVRPLLEISRAETYQFCQQFQLPIWEDVLNENFKY 194

Query: 200 ERVRVR 205
            R R+R
Sbjct: 195 TRNRIR 200


>gi|87123278|ref|ZP_01079129.1| possible MesJ-like protein [Synechococcus sp. RS9917]
 gi|86168998|gb|EAQ70254.1| possible MesJ-like protein [Synechococcus sp. RS9917]
          Length = 350

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 20/201 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV----C 77
           +L+A+SGG DSM LL  L  +   +   + +      DH  +  +    R  +D+    C
Sbjct: 27  LLLALSGGQDSMALLALLRDL---QPLHRWQLHLWHGDHGWQAGSS---RIAADLQAWCC 80

Query: 78  SR---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-------TLIMTAHT 127
           +    L +    V+    +      A AR  RY  ++  A+ +NA         ++TAHT
Sbjct: 81  AEGLDLAVERVTVTRAALESPERSEAGARAWRYGALAAEAERLNALHPQSPCCAVITAHT 140

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             D+ ET+ ++  R     G+G       +  D  L + RP +   R D  +   +  + 
Sbjct: 141 ASDRAETLLLQLARGTDLAGLGGQRSQRPLKSDGELPLVRPLVDFSRTDTATICQELALP 200

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
             +DPSN D  + R R+R  V
Sbjct: 201 VWQDPSNNDPSYGRNRIRAEV 221


>gi|330942652|ref|XP_003306154.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1]
 gi|311316480|gb|EFQ85748.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1]
          Length = 644

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIA 83
           A+SGG DSM L  AL+           K  A  VDH +R  + +E  +V+ ++ S+L + 
Sbjct: 14  AISGGVDSMAL-AALYKEAQSLDDCLSKPHAFIVDHKVRPESTEEAEWVAQELRSKLGME 72

Query: 84  HSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            +++  +W++          AR  RY  +    + +  T +M  H  DDQ ETV MR
Sbjct: 73  STILPLTWRDEFDSKRFETEARTLRYQALGRACRDMKITSLMVGHHADDQAETVMMR 129


>gi|145220203|ref|YP_001130912.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris vibrioformis DSM
           265]
 gi|145206367|gb|ABP37410.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 329

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 34/217 (15%)

Query: 6   IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISVDHC 61
           +E +R  VR LV     +LVAVSGG DSM LL   +A+  VL  R         + V HC
Sbjct: 9   LEQIR--VRRLVMDGEPLLVAVSGGPDSMALLSLFLAVQPVLHCR---------LGVAHC 57

Query: 62  ---LR--ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISE 112
              LR  ++  DE  +V + C RL +   V  +       + +  +  +AR  RY     
Sbjct: 58  NFGLRGPDSLADEA-FVREACRRLGLECFVARFDTELYCREHRLSIEESARTLRYDYFGR 116

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLR 171
             K+   T + T H   D  ET+     R  ++  + G+     +I+        RP L 
Sbjct: 117 LMKSEGFTKVATGHHVADNAETILFNLFRGTSQPSLRGIRSRHGSII--------RPMLL 168

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             + DI  +L ++ + +  D SN  D  +R  +R  V
Sbjct: 169 LHKADILGYLREKGMRYRIDRSNESDSHDRNFIRNRV 205


>gi|111225920|ref|YP_716714.1| hypoxanthine phosphoribosyltransferase [Frankia alni ACN14a]
 gi|111153452|emb|CAJ65210.1| hypoxanthine phosphoribosyltransferase (partial match) [Frankia
           alni ACN14a]
          Length = 630

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 89/207 (42%), Gaps = 17/207 (8%)

Query: 6   IESVRFFVRSLVY----PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           + +VRF VR+ V      A +LVA SGG DSM L  AL  V   R+   ++   + VDH 
Sbjct: 40  VAAVRFAVRNAVADLDPGALVLVACSGGPDSMSLAAALAFVAPRRA---LRAGLLVVDHG 96

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
               + +    V++    L +   V       P++   A        L +       A L
Sbjct: 97  WDPASAERAHGVAERGEALGL-RPVEVLTAHAPRSEGAARDARRDALLAAAARLGARAVL 155

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I   HT DDQ ETV +R  R    + +G  GM        +  + RP L  RRE  R+  
Sbjct: 156 I--GHTLDDQAETVLLRLARGSGARSLG--GM-----RPRDGLLRRPLLGLRREQTRAAC 206

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
           L   +   +DP+N D  F R RVR  V
Sbjct: 207 LAERLPVWDDPTNEDPAFARARVRHRV 233


>gi|322707722|gb|EFY99300.1| PP-loop family protein [Metarhizium anisopliae ARSEF 23]
          Length = 653

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 22/166 (13%)

Query: 2   FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---- 54
           F   +E+V   RF       P  + +A+SGG DSM +     +++  R+   IK +    
Sbjct: 20  FRDAVEAVCPPRFPAVRYARPRRVALAISGGVDSMAMAFLFSNLI--RAHRGIKIADNPT 77

Query: 55  ----AISVDHCLRETAKDEVRYVSDVCSRL--RIAHSVVSWKN-----SKPQT--GLMAA 101
                + VDH LR  +  E   V+    +L  +     ++WK+       P +   + + 
Sbjct: 78  ESAFGVIVDHRLRPESTLEAVKVAQELKKLGLKAVTKPLNWKDVSRHGQDPSSLPNMESV 137

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147
           AR  RY ++    + +NAT +  AH  DDQ ETV MR    +  +G
Sbjct: 138 ARTMRYRMLGSTCRYLNATSLFFAHHRDDQYETVLMRYMSGHQYRG 183


>gi|312144293|ref|YP_003995739.1| tRNA(Ile)-lysidine synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904944|gb|ADQ15385.1| tRNA(Ile)-lysidine synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 472

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 20/189 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+AVSGG DS+ +L         + +  +  + I +DH  R+ +  E+ +V +    L 
Sbjct: 23  ILLAVSGGPDSLTMLQLFFEF---KDYFAVDIALIHLDHQFRKESGQELDFVEEKAKDLN 79

Query: 82  IAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           I  +  + K + P+          AAAR  R+    E     +  L+  AH  DDQ ETV
Sbjct: 80  I--NFYTKKVNLPEIIKNENISAEAAARRERFNFFKEIYLKNDFDLLALAHHKDDQAETV 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDP 192
            +   R     G GL G+   I   +N+    +  P L   +++I  +  ++ ++   D 
Sbjct: 138 LLNLFR-----GSGLRGLS-GIEKKININGVQVIHPLLDFSKKEIIKYCQEKKLNPRYDS 191

Query: 193 SNTDDRFER 201
           SN ++ + R
Sbjct: 192 SNKENIYSR 200


>gi|332879339|ref|ZP_08447036.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682759|gb|EGJ55659.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 447

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 86/201 (42%), Gaps = 28/201 (13%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKD 68
            LV P   ILVA+SGG+DS    +AL  VL    F           HC      +E+ +D
Sbjct: 19  QLVEPDDKILVALSGGADS----VALLLVLLQAGF------HCEAAHCNFHLRGKESDRD 68

Query: 69  EVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           E ++V D+C     RL            +    +  AARE RY    E         I  
Sbjct: 69  E-KFVRDLCRSRSIRLHTKDFDTMAYAREKGISIEMAARELRYGYFEELRTDWRFDKIAV 127

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DD +ET+ +     +  +G GL G+  T +   N ++ RP L   RE+I  +L   
Sbjct: 128 AHHRDDNVETLLL-----HLVRGTGLKGL--TGMRYRNGYVIRPMLDTSREEIERYLAGE 180

Query: 185 NISWCEDPSNTDDRFERVRVR 205
             S+  D +N +    R ++R
Sbjct: 181 GQSYVTDSTNLETEAVRNKIR 201


>gi|291540846|emb|CBL13957.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Roseburia intestinalis
           XB6B4]
          Length = 485

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 23/201 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           ++V +SGG+DS+ LL+ L  +     +      AI V+H +R E ++ +  +V  +C + 
Sbjct: 21  VIVGLSGGADSVALLLVLLELRQRIGY---TLLAIHVEHGIRGEESRKDAAFVEKLCRQK 77

Query: 80  ---LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-----LIMTAHTFDDQ 131
               RI    V    +    G+  AAR  RY    + A+ +  +      I  AH  +D 
Sbjct: 78  NIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIALAHHANDN 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDT----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            ETV  +  R     G G+ GMC      +L D ++ I RP L   R  I  +L +    
Sbjct: 138 AETVLFQMAR-----GSGVHGMCGMHPKRVLGD-DILIVRPLLCVSRGQIEEYLKKCGQE 191

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           +  D +N D  + R R+R  +
Sbjct: 192 YRTDGTNLDINYSRNRIRHHI 212


>gi|227486467|ref|ZP_03916783.1| tRNA(Ile)-lysidine synthase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235648|gb|EEI85663.1| tRNA(Ile)-lysidine synthase [Anaerococcus lactolyticus ATCC 51172]
          Length = 454

 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS  L+  L  + +    G I      ++H  R+ A  +   V     +L 
Sbjct: 23  VIVGASGGPDSQFLIHILDKLKN--KLG-IDIVLAHLNHLHRKEASKDEDLVRQTAEKLG 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA----RYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +     S    +    L  ++ +A    RY   ++ +K    + I  AH  DDQ ET  M
Sbjct: 80  LKFYSRSRSMDELAKELKISSEDAGRRLRYEFFNDLSKKFPISKIAVAHNKDDQAETALM 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G GL G+      + N  I RP L  ++++I ++L    I++  D +N ++
Sbjct: 140 RIIR-----GTGLDGLRAMDYKNGN--IIRPILNIKKKEILAYLDSNEIAYAIDHTNFEN 192

Query: 198 RFERVRVR 205
            + R ++R
Sbjct: 193 DYTRNKIR 200


>gi|193216339|ref|YP_001997538.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC
           35110]
 gi|193089816|gb|ACF15091.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC
           35110]
          Length = 323

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 21/213 (9%)

Query: 3   LSPIES---VRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           ++P E     R  V+SL+     +L+A SGG+DSM LL  L  V   + F  ++ +A   
Sbjct: 1   MTPFEKKFLERLRVKSLIKKNEKVLLAFSGGADSMALLSLLKKV---QPFLNLQLAAAHC 57

Query: 59  DHCLR--ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISE 112
           +  LR  E+  DE  +    C  L I    + +       + +  +  AAR  RY    +
Sbjct: 58  NFGLRGEESDADET-FCQMQCDALEIPIFTIHFDTKHFAQQHKMSIEEAARHLRYNFFYK 116

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+    + I TAH  +D  ET+     R      +GL G+   + ++    + RP L  
Sbjct: 117 LAEIERCSKIATAHHANDNAETILFNLFR--GSSLLGLKGI--RVKHE---KLVRPLLGF 169

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           +R ++  +L  + + +  D +N  D ++R  +R
Sbjct: 170 KRAELIEYLESQQLPYRLDLTNLSDAYDRNFIR 202


>gi|283956826|ref|ZP_06374300.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791687|gb|EFC30482.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 321

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 24/190 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S GSDS  L   L          KI F  + +++  R+ +  E     ++  +   
Sbjct: 17  LLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELKAKELALKF-- 67

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            H  +  K++ K Q+     AR+ RY    +     +   ++ AH  +DQ E   M+  R
Sbjct: 68  -HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHHLNDQFEWFLMQLSR 126

Query: 142 DYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                G GL+   GM  C+      N  + RP L   +++I SFL +++I +  D SN +
Sbjct: 127 -----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIFYFYDESNEN 178

Query: 197 DRFERVRVRR 206
           +++ R  +R+
Sbjct: 179 EKYFRNYIRK 188


>gi|282901699|ref|ZP_06309615.1| PP-loop protein [Cylindrospermopsis raciborskii CS-505]
 gi|281193462|gb|EFA68443.1| PP-loop protein [Cylindrospermopsis raciborskii CS-505]
          Length = 335

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 31/205 (15%)

Query: 14  RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVR 71
           R L  P  H+LVA+SGG DS+ L+     +L D     K K +    DH  RE ++    
Sbjct: 17  RHLFAPHEHLLVALSGGQDSLCLI----KLLVDLQVKWKWKLAIAHCDHRWREDSQANAD 72

Query: 72  YVSDVCS------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +V ++ +       L+IA   V   NS+      A AR  RY +  E A+      I+T 
Sbjct: 73  HVKNLATSWDLPFHLQIATDPV---NSE------ADARNWRYRVFREIAEDYGYKYIVTG 123

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRPFLRCRREDIRSFL 181
           HT  D+ ET+     R     G G  G+  ++ ++ +L     + RP L   RE    F 
Sbjct: 124 HTSSDRAETLIYNLIR-----GTGADGL-QSLNWERSLGEKTMLVRPLLEITREQTGKFC 177

Query: 182 LQRNISWCEDPSNTDDRFERVRVRR 206
              ++    D +N + ++ R R+R+
Sbjct: 178 QDLDLPVWVDSTNQNLQYPRNRIRQ 202


>gi|331016383|gb|EGH96439.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 445

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 8/185 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  +L+ L + L+ R+       AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDST-VLLHLLAELAKRA-NLPALHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V     K + G        +    +   +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESV---RVKVEPGASVEQAARQARYAAFTKRLGEGDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M +         ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 145 GVRG--LAAMPEQRRLGRGH-LARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201

Query: 204 VRRFV 208
           +R  V
Sbjct: 202 LRSQV 206


>gi|239929771|ref|ZP_04686724.1| cell cycle protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438097|ref|ZP_06577487.1| tRNA(Ile)-lysidine synthase [Streptomyces ghanaensis ATCC 14672]
 gi|291340992|gb|EFE67948.1| tRNA(Ile)-lysidine synthase [Streptomyces ghanaensis ATCC 14672]
          Length = 341

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 25/193 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L A SGG+DSM L  AL         G ++   ++VDH L +   D+    +DV  RLR
Sbjct: 42  VLAACSGGADSMALASAL--AFEAPRLG-LRAGGVTVDHGL-QAGSDQ--RAADVVLRLR 95

Query: 82  ---------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                    +A SV   ++  P+     AAR+ARYA +   A+   A  ++  HT DDQ 
Sbjct: 96  ELGLDPVESVAVSV--GRDGGPEA----AARDARYAALDAAAERHGAAAVLLGHTRDDQA 149

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +   R    +   LSGM    +        RPFL+  R+  R   + +++S  +DP
Sbjct: 150 ETVLLGLARGSGIR--SLSGMA--AVSGAGGRYRRPFLQLDRQTARKACMVQSLSVWDDP 205

Query: 193 SNTDDRFERVRVR 205
            N D  + R R+R
Sbjct: 206 HNADPAYTRSRLR 218


>gi|306819511|ref|ZP_07453218.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304647803|gb|EFM45121.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 400

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 82/200 (41%), Gaps = 29/200 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA+SGG DS+ L   L    S R        A++VDH  R  +  E    +     L 
Sbjct: 48  LVVALSGGPDSLALAAGLLRAAS-RRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106

Query: 82  IAHSVVSWKNSKPQTGL--MAAAREARYALISEHA------KTINATLIMTAHTFDDQLE 133
            A + V  +   P+TG     +ARE R+ L++  A      + + +    T HT DDQ E
Sbjct: 107 YAQAKV-LRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAE 165

Query: 134 TVYMRSQRD---YAEKGMGLSGMCDTIL----------------YDLNLWISRPFLRCRR 174
           TV +R  R     A   M    M D+                   D+ +WISRP L  RR
Sbjct: 166 TVLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPLENSVKNDEDVLVWISRPLLGVRR 225

Query: 175 EDIRSFLLQRNISWCEDPSN 194
           E       Q  +    DP+N
Sbjct: 226 ETTHEACRQAGLIPAHDPTN 245


>gi|327297324|ref|XP_003233356.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892]
 gi|326464662|gb|EGD90115.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892]
          Length = 806

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +AVSGGSDSM L      +++      ++ +A  VDH  R  +  E + V+     L 
Sbjct: 76  IGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVTAYIVDHKYRPESSQEAQSVAKRVENLG 135

Query: 82  IAHSVVS--WKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V++  W       + G    AR  RY ++ +         ++  H  DD +ET  M
Sbjct: 136 VQSKVLTLQWPEGGILTKKGFETQARMLRYQILGKACVKDGVRALLLGHHQDDNVETALM 195

Query: 138 RSQRDYAEKGM 148
           R  + + + G+
Sbjct: 196 RVSKGHRKLGL 206


>gi|206560511|ref|YP_002231275.1| tRNA(Ile)-lysidine synthase [Burkholderia cenocepacia J2315]
 gi|198036552|emb|CAR52449.1| tRNA(Ile)-lysidine synthase [Burkholderia cenocepacia J2315]
          Length = 473

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 99/227 (43%), Gaps = 23/227 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122
           A   V +     +RL +A    S +   P+    G+ A ARE RYA +    +      +
Sbjct: 69  ADAWVAHAEAEAARLGVAFE--SMRVDVPRDSGLGIEATARERRYAALDAMGERHGVATL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
             A   DDQ ETV ++  R     G G++G+           +++   RP LR  R  + 
Sbjct: 127 WLAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGVSIERVRPLLRLLRAQLE 181

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +  Q  ++W +D SN D R+ R  +R  V    L AL +    F+D
Sbjct: 182 RYAEQHALTWIDDESNGDTRYARNALRLDV----LPALAVHFPGFRD 224


>gi|210612743|ref|ZP_03289458.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787]
 gi|210151436|gb|EEA82444.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787]
          Length = 244

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 18/200 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL ALH +   + F   K + SAI+VD    E   D V    ++C 
Sbjct: 25  HIAVGISGGKDSLTLLYALHGL---KRFYPNKFELSAITVDLGYEEFDLDPVH---ELCQ 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + + VV           + ++   +   + R   +++  K +    +  AH  DD +
Sbjct: 79  ELGVPYKVVKTDIAHILFEERKESNPCSLCAKMRKGALNDAVKEMGCNKVAYAHHKDDII 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   S    T L  ++L + RP +     D+  F  + N+   +  
Sbjct: 139 ETMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPIMFVDEADVIGFKNKYNLPVVKSK 194

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D   +R   +  VR ++
Sbjct: 195 CPVDGYTKRQYAKELVRQLN 214


>gi|255325834|ref|ZP_05366926.1| tRNA(Ile)-lysidine synthase [Corynebacterium tuberculostearicum
           SK141]
 gi|255297046|gb|EET76371.1| tRNA(Ile)-lysidine synthase [Corynebacterium tuberculostearicum
           SK141]
          Length = 295

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 33/197 (16%)

Query: 22  ILVAVSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           + V +SGG+DS+ L+ AL    H VL           A+ VDH L++ ++ +    ++  
Sbjct: 10  VAVGLSGGADSLALMAALVAEGHEVL-----------ALCVDHGLQDGSRAQAERAAEQA 58

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL------IMTAHTFDDQ 131
             L     V+S      +TG +A A     A  +   + + A        +  AHT DDQ
Sbjct: 59  RTLGARAQVLS-----VETGAVAGAESMEAAARAARYRALAAACADEGLEVAVAHTADDQ 113

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ + + R        ++GM +    +    + RP L  RR D      +  +S   D
Sbjct: 114 AETLLLGALRGR------VTGMSERSEVE-GARVVRPLLGVRRADTEGACAELGLSAWRD 166

Query: 192 PSNTDDRFERVRVRRFV 208
           P N D  F RV +RR V
Sbjct: 167 PQNEDTNFRRVALRREV 183


>gi|167754850|ref|ZP_02426977.1| hypothetical protein CLORAM_00354 [Clostridium ramosum DSM 1402]
 gi|167704900|gb|EDS19479.1| hypothetical protein CLORAM_00354 [Clostridium ramosum DSM 1402]
          Length = 599

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 13/192 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL  ++           +     V++ LRE +  + + V   C R  +
Sbjct: 15  ILGVSGGCDSMALLDMMNQ-------AGYQIIVCHVNYHLREDSDLDQQTVEAYCHRYDL 67

Query: 83  AHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              V    K           AR  RY    E         ++ AH  +D +E + M+ QR
Sbjct: 68  PCYVREIDKQVYGPDNFQDQARRLRYQFYLEIGMKYQTQKVVLAHHQNDVIENIVMQLQR 127

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              +  +G+  + +       + + RP L  R++ +R +    N+ + +D +N    F R
Sbjct: 128 HNTKGYLGIQEISEV----FGVTVIRPCLAVRKQFLRDYCHGHNVEYRDDYTNFQTEFTR 183

Query: 202 VRVRRF-VRDID 212
             VR   ++D D
Sbjct: 184 DYVRNVTLKDYD 195


>gi|237735418|ref|ZP_04565899.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381163|gb|EEO31254.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 590

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 13/192 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL  ++           +     V++ LRE +  + + V   C R  +
Sbjct: 6   ILGVSGGCDSMALLDMMNQ-------AGYQIIVCHVNYHLREDSDLDQQTVEAYCHRYDL 58

Query: 83  AHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              V    K           AR  RY    E         ++ AH  +D +E + M+ QR
Sbjct: 59  PCYVREIDKQVYGPDNFQDQARRLRYQFYLEIGMKYQTQKVVLAHHQNDVIENIVMQLQR 118

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              +  +G+  + +       + + RP L  R++ +R +    N+ + +D +N    F R
Sbjct: 119 HNTKGYLGIQEISEV----FGVTVIRPCLAVRKQFLRDYCHGHNVEYRDDYTNFQTEFTR 174

Query: 202 VRVRRF-VRDID 212
             VR   ++D D
Sbjct: 175 DYVRNVTLKDYD 186


>gi|84489152|ref|YP_447384.1| ATPase [Methanosphaera stadtmanae DSM 3091]
 gi|84372471|gb|ABC56741.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091]
          Length = 319

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 18/131 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG DS+ LL  L ++L +++   I   A+++D  +    ++ +R   +    L 
Sbjct: 54  VLVGLSGGKDSVALLKIL-NILKEKNI--ITLEAVTIDEGISGYREEGIRIAKETAKALD 110

Query: 82  IAHSVVSWKNSKPQT-----GLMAAAREARYA----------LISEHAKTINATLIMTAH 126
           I H +VS+K+    T        A   +A++A          + ++ A+ +NAT + T H
Sbjct: 111 IKHHIVSFKDKYNFTIDKIMEAEAKCNDAQHACTYCGVFRRQIFNQVARDVNATKLATGH 170

Query: 127 TFDDQLETVYM 137
             DD+ +++ M
Sbjct: 171 NLDDETQSIVM 181


>gi|145222003|ref|YP_001132681.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK]
 gi|145214489|gb|ABP43893.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK]
          Length = 322

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 85/198 (42%), Gaps = 20/198 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F R+  +P    VA+SGG DS+ L  A+ + L          +A+ VDH L+  + D   
Sbjct: 17  FARTHRFPPPWCVALSGGPDSLAL-TAVAATLH-------PTTALIVDHRLQPGSADVAA 68

Query: 72  YVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
              +    L  +A  V+      P     AA      AL  + A+  +   ++  HT DD
Sbjct: 69  AAREQALALGCVAAQVLPVDVGSPGGPEAAARTARYRAL--DDAR--DGKPVLLGHTLDD 124

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV +   R     G G   +     YDL  W  RP L  RR+       +  ++  +
Sbjct: 125 QAETVLLGLGR-----GSGPRSIAGMRPYDLP-W-GRPLLGVRRDTTHRACAELGLNPWQ 177

Query: 191 DPSNTDDRFERVRVRRFV 208
           DP N D R+ RVR+R  V
Sbjct: 178 DPHNLDPRYTRVRLRTEV 195


>gi|242310195|ref|ZP_04809350.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523492|gb|EEQ63358.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 327

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 30/198 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  L+A S G+DS  L   L          +I F    VD+  R+ +K EV       SR
Sbjct: 12  AKNLLAFSSGTDSTALYFLLKEY-------EISFDIAIVDYGTRKQSKLEV-------SR 57

Query: 80  LRIAHSVVSWKNSKPQT--------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              A S+  W N K  T           A AR+ RY          +   ++ AH  +D 
Sbjct: 58  ---AKSLCFWDNKKCYTLTTKPITKNFEAEARKIRYDFFYTLTLQESYQNLILAHQLNDN 114

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISW 188
            E   M+  +  + + M +     ++ ++ +     I RP +   +  I+S+L +RNI +
Sbjct: 115 FEWFLMQFCKGSSVENMQIPK--KSLFWEESQRKCHILRPMISISKNQIKSYLQKRNIFY 172

Query: 189 CEDPSNTDDRFERVRVRR 206
            ED SN D  F R   R+
Sbjct: 173 FEDSSNLDIVFTRNYFRK 190


>gi|308048686|ref|YP_003912252.1| tRNA(Ile)-lysidine synthetase [Ferrimonas balearica DSM 9799]
 gi|307630876|gb|ADN75178.1| tRNA(Ile)-lysidine synthetase [Ferrimonas balearica DSM 9799]
          Length = 446

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 113/282 (40%), Gaps = 30/282 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK---FSAISVDHCLRETAKDEVRY 72
           L     IL+A SGG DS  L + L      R  G+      S I + H L   A     +
Sbjct: 22  LATTGRILLAYSGGVDSELLAVCL-----ARWAGQCASPPVSLIHIHHGLSAYADQWAGH 76

Query: 73  VSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            +     L +   VV+ +    P+  + A+AR+ARY      A+     L++TAH  DDQ
Sbjct: 77  CAARAKALDLPIEVVAVQLQRGPRISIEASARQARYDAF--RARLGPNDLLLTAHHLDDQ 134

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E++ +  +R    +G  LS M           + RP+L  RR +I +   Q  +   ED
Sbjct: 135 AESLLLALKRGSGPRG--LSAMAAQQALGQGRMV-RPWLGLRRAEIEAAAAQLGVEHIED 191

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTV 244
            SN D RF+    R F+R   L  L  +   F    V+     A        L    L  
Sbjct: 192 DSNADTRFD----RNFLRHQVLPQLNQRWPGFSQAVVRSAALCAEQQQLCDELAEADLLT 247

Query: 245 HMRSIIAISQDILNIDS-----TLLFYLLRVSAAICGGQISL 281
           H R   A+S   L   S      LL + LR   A+   Q+ +
Sbjct: 248 HQRDDGALSVTALAALSAPRRNNLLRFWLRQQGALMPSQLQM 289


>gi|206603982|gb|EDZ40462.1| tRNA(Ile)-lysidine synthetase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 504

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 82/193 (42%), Gaps = 21/193 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEV---RYV 73
           P H   A+SGG+DS+ L   LH  L  R       + +  +H  R  E  +DE+    + 
Sbjct: 39  PPHFHAAISGGADSLFLAFLLHLFLEKRH----PLTLLHFNHRTRGMENEEDEIFLRNFA 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +   LRI   V+S     P        R+ RYA      +  +  ++   H  DDQ+E
Sbjct: 95  QHIGRPLRIG--VLS--EPVPDHLSEDFLRKKRYAFFDTVLRENSNNILFLGHHQDDQVE 150

Query: 134 TVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T+ M   R    KG +G+    D  ++       RP L  R ++IR  L   +I +  D 
Sbjct: 151 TILMNLFRGTGPKGVLGMLNKPDRRIF-------RPLLELRADEIRKILSDYDIPYRMDS 203

Query: 193 SNTDDRFERVRVR 205
           SN    + R RVR
Sbjct: 204 SNLHRDYLRNRVR 216


>gi|295089879|emb|CBK75986.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Clostridium cf.
           saccharolyticum K10]
          Length = 464

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 30/202 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
           ++V +SGG+DS+ LL    S+LSD RS   I+  A+ V H LR + A  +  +  ++C +
Sbjct: 21  VVVGLSGGADSVCLL----SLLSDMRSSLSIRLRAVHVHHGLRGQEADRDADFSRELCRK 76

Query: 80  LRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHA--------KTINATL---IM 123
           L I   ++  +N+  +          A R  RY    + A        +   A L   I 
Sbjct: 77  LDIPF-ILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWEDKEREQEGAALPVRIA 135

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  DD  ET+       +  +G GL G+    +  +   + RP L   R++I  +L +
Sbjct: 136 VAHHGDDSAETILY-----HLFRGSGLRGLAG--IAPVRGRVIRPLLCVSRQEILEYLRE 188

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
             +S+  D +N  + + R R+R
Sbjct: 189 EGLSYVTDSTNLLNDYTRNRLR 210


>gi|296101358|ref|YP_003611504.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055817|gb|ADF60555.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 361

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ A AR+ARYA  +   +   A  ++TA   DDQ ET  +  +R     G  LS M + 
Sbjct: 22  GIEAHARKARYAAFTAALQPGEA--LVTAQHLDDQCETFLLALKRGSGPAG--LSAMPER 77

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
             +     + RP L   R  + ++  Q  +SW ED SN DD ++    R F+R   L  L
Sbjct: 78  SDFAGTQ-LLRPLLGESRASLEAWAQQYQLSWIEDESNQDDGYD----RNFLRLRVLPLL 132

Query: 217 YLKMKKFQD 225
             +   F D
Sbjct: 133 TARWPHFAD 141


>gi|304383098|ref|ZP_07365573.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella marshii DSM 16973]
 gi|304335784|gb|EFM02039.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella marshii DSM 16973]
          Length = 444

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 82/200 (41%), Gaps = 21/200 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF   + +     R L      LVA+SGG+DS+ LL  L+ +            A+  + 
Sbjct: 1   MFSKTVSNYIAIHRLLQKEGKYLVALSGGADSVALLFLLNRL-------HYHLEAVHCNF 53

Query: 61  CLR--ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHA 114
            LR  E  +DE  +   +C  L I    V +  S         +  AARE RY       
Sbjct: 54  KLRGEEADRDEA-FCQKLCRSLNIPFHTVHFDTSSYARLHGISIEMAARELRYNYFESLR 112

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K ++   I  AH  DD +ET+ +   R     G GL G+   +    N +I RP L   R
Sbjct: 113 KDLSCDGICIAHHRDDIVETMLINLVR-----GTGLHGLQGIL--PRNGFILRPLLCVGR 165

Query: 175 EDIRSFLLQRNISWCEDPSN 194
            +I  +L     ++  D +N
Sbjct: 166 MEIEQYLRDIGQTYITDSTN 185


>gi|312212468|emb|CBX92551.1| hypothetical protein [Leptosphaeria maculans]
          Length = 758

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 15/173 (8%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-VCSRLRIA 83
           A+SGG DSM L+  L+     R  G     A  VDH  R  + +E  +V++ +  +L + 
Sbjct: 108 AISGGVDSMALMT-LYYRARKRRTGLPPAHAFIVDHNARPGSAEEAEWVAEQLRQKLDVP 166

Query: 84  HSVV--SWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            +V+   W    +          AR  RY  + E  ++ N + ++ AH  DDQ ETV MR
Sbjct: 167 STVLRLEWPSDLDPSDHRRFETEARRLRYQALGESCRSHNISALLVAHHADDQAETVLMR 226

Query: 139 SQRDYAEKGM-GLSG-----MCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              +    G+ G+ G      C+ I Y L      P+ + R ++  S ++++ 
Sbjct: 227 LANNRLRSGLQGIQGSEWIPECEGI-YGL-YHSGSPYTKIRPDNPSSLVVEQG 277


>gi|225028631|ref|ZP_03717823.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353]
 gi|224954041|gb|EEG35250.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353]
          Length = 241

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 18/199 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I V +SGG DS+ LL AL  +   R+F   KF   A++VD        +E+R   + C +
Sbjct: 26  IAVGISGGKDSLTLLYALSYL---RNFYPHKFDIVAVTVDLGFDNLNLEEIR---EFCKK 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L + + ++  +        + ++   +   + R   +++  K +    +  AH  DD LE
Sbjct: 80  LGVEYQIIKTQIAEVVFQVRKESNPCSLCAKMRKGALNDAMKELGCNKVAYAHHKDDLLE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           ++ M     +  +G   +    T L    L + RP L     D++ F+ + N+   + P 
Sbjct: 140 SMMM----SFLFEGRIHTFAPVTYLDRSGLTVIRPLLFLYEGDVKGFVKEYNLPVVKSPC 195

Query: 194 NTDDRFERVRVRRFVRDID 212
             D   +R  V+  + +I+
Sbjct: 196 PVDGSTKRENVKNLIGEIN 214


>gi|305432244|ref|ZP_07401407.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter coli JV20]
 gi|304444592|gb|EFM37242.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter coli JV20]
          Length = 321

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 24/200 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + SL+     L+A S GSDS  L    H ++      KI F  + +++  R+ +  E + 
Sbjct: 7   ILSLLKKGRNLLAFSYGSDSSALF---HFLVQK----KIDFDLVMINYKTRKNSDLEEQK 59

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             ++       H  +  K++    G     AR+ RY    +     N + ++ AH  +DQ
Sbjct: 60  AKELALEF---HKKIFIKSAPVIKGNFEKEARDFRYDFFEKICLEQNYSNLILAHHLNDQ 116

Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           LE   M+  R     G GL+   GM  C+      N  + RP L   +++I S+L + +I
Sbjct: 117 LEWFLMQLSR-----GAGLAEILGMQECEK---RSNYTLLRPLLFMSKDEILSYLKENDI 168

Query: 187 SWCEDPSNTDDRFERVRVRR 206
            + +D SN ++++ R  +R+
Sbjct: 169 FYFQDESNENEKYFRNYIRK 188


>gi|326481619|gb|EGE05629.1| PP-loop family protein [Trichophyton equinum CBS 127.97]
          Length = 774

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +AVSGGSDSM L      +++      ++  A  VDH  R  +  E + V+     L 
Sbjct: 42  IGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYIVDHKYRPESSQEAQSVAKRVKNLG 101

Query: 82  IAHSVVS--WKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V++  W       + G    AR  RY ++ +         ++  H  DD +ET  M
Sbjct: 102 VQSKVLTLQWPEGGILTKKGFETQARTLRYQILGQACVKDGIRALLLGHHQDDNVETALM 161

Query: 138 RSQRDYAEKGM 148
           R  + + + G+
Sbjct: 162 RVSKGHRKLGL 172


>gi|86149480|ref|ZP_01067711.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596817|ref|ZP_01100054.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218563056|ref|YP_002344835.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|61216748|sp|Q9PMK7|TILS_CAMJE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|85840262|gb|EAQ57520.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191658|gb|EAQ95630.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360762|emb|CAL35561.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315930835|gb|EFV09827.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           305]
          Length = 321

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 24/200 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + SL+     L+A S GSDS  L   L          KI F  + +++  R+ +  E   
Sbjct: 7   ILSLLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELK 59

Query: 73  VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             ++  +    H  +  K++ K Q+     AR+ RY    +         ++ AH  +DQ
Sbjct: 60  AKELALKF---HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQ 116

Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            E   M+  R     G GL+   GM  C+      N  + RP L   +++I SFL +++I
Sbjct: 117 FEWFLMQLSR-----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDI 168

Query: 187 SWCEDPSNTDDRFERVRVRR 206
            +  D SN ++++ R  +R+
Sbjct: 169 FYFHDESNENEKYFRNYIRK 188


>gi|293363922|ref|ZP_06610658.1| tRNA(Ile)-lysidine synthetase [Mycoplasma alligatoris A21JP2]
 gi|292552412|gb|EFF41186.1| tRNA(Ile)-lysidine synthetase [Mycoplasma alligatoris A21JP2]
          Length = 291

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 14/186 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+AVSGG DSM LL        ++ + K    A  V++  R  +  + + V + C +  
Sbjct: 8   ILIAVSGGPDSMFLL--------NKFYKKNYVIAAFVNYNQRSDSNIDQKIVEEFCFKNN 59

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I    ++  K+   +      AR  RY    E  K  N   ++ A   DD +E  +++  
Sbjct: 60  IVLEKLILNKSDYTKGNFQDWARITRYNFFKEMYKKHNCKKLLVAQHKDDFIENYFLQKT 119

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R       G+    +  L+D  +++ RP + R  ++ I    ++ N+ +  D +N + ++
Sbjct: 120 RKKDRLFFGIDKKSE--LFD--MYVERPLINRYFKKQIIKQNMKNNLIFANDYTNHEPKY 175

Query: 200 ERVRVR 205
           +R  +R
Sbjct: 176 KRNEIR 181


>gi|224436971|ref|ZP_03657952.1| hypothetical protein HcinC1_03315 [Helicobacter cinaedi CCUG 18818]
 gi|313143443|ref|ZP_07805636.1| tRNA(Ile)-lysidine synthase [Helicobacter cinaedi CCUG 18818]
 gi|313128474|gb|EFR46091.1| tRNA(Ile)-lysidine synthase [Helicobacter cinaedi CCUG 18818]
          Length = 414

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 24/217 (11%)

Query: 2   FLSPIESVRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           FLSP+ ++R   + L +  +  L+  SGG DS  L   L          KI F    V +
Sbjct: 4   FLSPL-ALRLKEKILPLADSKNLLGFSGGVDSTALFFLLVEY-------KIPFDIAIVHY 55

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARYALISEHAKTIN 118
             R+ A DE+ +   + ++L   H  +S     PQ      + AR  R++   E  ++  
Sbjct: 56  HTRKEADDELSHAQHL-AKLYKKHCFIS---HAPQFSQNFESQARAFRFSFFDEIMQSYG 111

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---DLNLWISRPFLRCRRE 175
              ++ AH  +D+ E + M+  R     G GL  +     +    ++  I RP     ++
Sbjct: 112 YGALILAHQLNDRFEWLLMQLTR-----GAGLENLLGFESWRNAKISYHIVRPLESISKD 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-RFVRDI 211
           +I ++  ++ + + ED SN D  F+R   R RF  ++
Sbjct: 167 EIYTYCKEKGLKYFEDSSNADLGFKRNAFRVRFANEL 203


>gi|288925835|ref|ZP_06419766.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella buccae
           D17]
 gi|288337490|gb|EFC75845.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella buccae
           D17]
          Length = 430

 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 15/159 (9%)

Query: 55  AISVDHC---LR--ETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREAR 106
           ++   HC   LR  E+ +DE   VS   SR   L  AH          +  +  AAR  R
Sbjct: 9   SVEAAHCNFNLRGEESKRDEDFCVSLCASRGIKLHRAHFDTFEYAHLHKVSIEMAARNLR 68

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           Y    +    I A  I  AH  +D +ET+ +   R     G G+ G+  T +   N ++ 
Sbjct: 69  YHYFDQLRLAIGAKGICVAHHLNDNVETLLLNLIR-----GTGIQGL--TGMASRNGFVL 121

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           RP L  R E+IR +L   N ++  D +N +D   R ++R
Sbjct: 122 RPLLDVRHEEIREYLHSINQAFVIDSTNLEDDVLRNKIR 160


>gi|325961732|ref|YP_004239638.1| tRNA(Ile)-lysidine synthetase [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323467819|gb|ADX71504.1| tRNA(Ile)-lysidine synthetase [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 402

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 79/191 (41%), Gaps = 10/191 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           YP  ++VA SGG DS+ L                 ++  A+ VDH L+E + +     + 
Sbjct: 61  YPGRLIVACSGGPDSLALAAVAAYFARRGHVDGHPVRVGAVVVDHQLQEGSAEVAAETAR 120

Query: 76  VCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           V   L +A   + +   +    G  AAAREAR+  +   A    A  ++  HT DDQ E 
Sbjct: 121 VLQELGLAPVEIRTVTVAGEGMGPEAAAREARHEALEAAAAGQGADAVLLGHTLDDQAEQ 180

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   L+GM           + RPFL  RR D         +    DP+N
Sbjct: 181 VLLGLARGSGTR--SLAGM-----RPARGKLLRPFLELRRADTEEICAVEELDPWHDPTN 233

Query: 195 TDDRFERVRVR 205
            D  F R R R
Sbjct: 234 ADPAFARSRTR 244


>gi|326472395|gb|EGD96404.1| hypothetical protein TESG_03852 [Trichophyton tonsurans CBS 112818]
          Length = 774

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +AVSGGSDSM L      +++      ++  A  VDH  R  +  E + V+     L 
Sbjct: 42  IGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYIVDHKYRPESSQEAQSVAKRVKNLG 101

Query: 82  IAHSVVS--WKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V++  W       + G    AR  RY ++ +         ++  H  DD +ET  M
Sbjct: 102 VQSKVLALQWPEGGILTKKGFETQARTLRYQILGQACVKDGIRALLLGHHQDDNVETALM 161

Query: 138 RSQRDYAEKGM 148
           R  + + + G+
Sbjct: 162 RVSKGHRKLGL 172


>gi|312173368|emb|CBX81622.1| cell cycle protein [Erwinia amylovora ATCC BAA-2158]
          Length = 433

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++     +L     +L+A SGG DS  LL  L  +   R   +++  A+ + H L   
Sbjct: 1   MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQRP--QLQLRAVHIHHGLSPL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A   V +    C R R+   VV  +    + G+ AAAR+ARY  + +  +      ++TA
Sbjct: 59  ADGWVAHCQQQCDRWRVPLVVVRVQVDALEGGIEAAARQARYQALRQ--QLAAGETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+        +    +L   RP L   R+ + S+  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQQQLLGDHRHL---RPLLAQSRQQLESWAQRYQ 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I W ED SN D R++    R F+R   L  + L  +++      V  +  +   +     
Sbjct: 174 IGWIEDDSNQDPRYD----RNFLR---LQVMPLLNQRWPHFASAVARSAQLCGEQERL-- 224

Query: 246 MRSIIAISQDILNIDSTLLFY--LLRVSAA---------ICGGQISLPGYRSMERVMLFL 294
           +  ++A S D L  +S  L +  LL +S A         I     S+P   +++R+ L +
Sbjct: 225 LDELLAESLDALVDESGALCFTPLLTMSDARRSALLRRWIARQHGSMPSRAALQRIWLEV 284

Query: 295 ---KSGKRGCVSIGRVVIDR-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350
              ++    C+ +G   + R R    W       LP  +        W   +Q   L D 
Sbjct: 285 ACSRADAEPCLRMGSREVRRFRDRLYW-------LPQRLPLGASQLAWPAPWQPLTLPDG 337

Query: 351 LIQI 354
           L Q+
Sbjct: 338 LGQL 341


>gi|302900689|ref|XP_003048310.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI
           77-13-4]
 gi|256729243|gb|EEU42597.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI
           77-13-4]
          Length = 677

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 19/138 (13%)

Query: 28  GGSDSMGLLIALHSVLSDRSFGKIKFS--------AISVDHCLRETAKDEVRYVSDVCSR 79
           GG DSM L      +L   +F + K +        A+ +DH LR+ + +E   V+    +
Sbjct: 46  GGVDSMALAYLTSRMLQ--TFRRAKIADNPAHGALAVVIDHRLRDESTEEAMQVAKELRK 103

Query: 80  LRIAHSV--VSWKNSK-----PQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           L +  +V  ++WK  K     P+    L   AR  RY  +  H     AT +  AH  DD
Sbjct: 104 LDLKTTVTALAWKEEKRNGLDPRKLPNLEGLARTYRYRALGNHCNYQGATSLFFAHHRDD 163

Query: 131 QLETVYMRSQRDYAEKGM 148
           Q ETV MR    +  +G+
Sbjct: 164 QYETVLMRLLGGHGYRGL 181


>gi|12044936|ref|NP_072746.1| tRNA(Ile)-lysidine synthetase [Mycoplasma genitalium G37]
 gi|1351480|sp|P47330|TILS_MYCGE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3844671|gb|AAC71302.1| tRNA(Ile)-lysidine synthetase [Mycoplasma genitalium G37]
 gi|166078989|gb|ABY79607.1| tRNA(Ile)-lysidine synthetase [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 290

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 28/191 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +  VSGGSDSM +L         + + K     + V++  R T+  + + V   C +L I
Sbjct: 8   IAGVSGGSDSMLML---------KLYQKKIACVVHVNYNTRSTSLRDQKLVEQYCQKLNI 58

Query: 83  ---AHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               H+V   + WK +         AR+ R+    + AK      ++ AH  DD +E   
Sbjct: 59  PLVVHTVDPDLVWKKN-----FQNQARKIRFDQFKKTAKLYQTNKLLLAHHRDDFIEQAK 113

Query: 137 MRSQRDYAEKGM--GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           M  Q D  ++ +  G+   C+  LY L ++  RP ++  +++I +   Q +I +  D +N
Sbjct: 114 M--QLDAKKRAVYYGIKTRCE--LYGLKIY--RPLMKYWKDEIIALCRQDHIPYEIDETN 167

Query: 195 TDDRFERVRVR 205
               ++R  VR
Sbjct: 168 KLPIYKRNEVR 178


>gi|183602055|ref|ZP_02963424.1| hypothetical protein BIFLAC_07251 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190541|ref|YP_002967935.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195947|ref|YP_002969502.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218940|gb|EDT89582.1| hypothetical protein BIFLAC_07251 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240248933|gb|ACS45873.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250501|gb|ACS47440.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793528|gb|ADG33063.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 376

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS+ L      V +  ++G I+  AI VDH L++ +    +  +  C  L 
Sbjct: 39  VFVACSGGRDSLALAACAQVVCA--AWG-IRCGAIIVDHHLQDASHKVAQQTAQTCRDLG 95

Query: 82  IAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +    +V  +  +   G+ AAAREARYA +   A+  +AT ++ AHT DDQ E++ +   
Sbjct: 96  LEPVLIVDVQVKERGQGIEAAAREARYAALVGTARRWHATAVLLAHTKDDQAESILIDLI 155

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R  A      +GM  T L+D ++ + RP L   R           + + +DP+N D
Sbjct: 156 R--AAGTDAFAGMPQTQLFD-DVLVLRPLLGITRAQTTRICEDEGLEYWDDPTNGD 208


>gi|108796857|ref|YP_636406.1| hypothetical chloroplast RF62 [Staurastrum punctulatum]
 gi|122211798|sp|Q32RX0|TILS_STAPU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61393625|gb|AAX45766.1| hypothetical chloroplast RF62 [Staurastrum punctulatum]
          Length = 493

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 17/173 (9%)

Query: 15  SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L+ P   IL+AVSGG DS+ LL  L  +    S+   K   I  DH     +K +  +V
Sbjct: 55  TLLQPKQRILIAVSGGQDSICLLRILFDLQRKWSW---KLGIIHCDHRWNSRSKIQAEHV 111

Query: 74  SDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + +   L+I  H  ++ ++ + +    + AR  RY +I   A + N T I+T H   D++
Sbjct: 112 ACLAINLQINYHEGIAIESVQKE----SIARLWRYNVIQSVAISNNYTAIITGHNASDRI 167

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR-SFLLQR 184
           ET+     R     G GL G+  +I +  NL  S  F R     I+ SFL+++
Sbjct: 168 ETLLYNLMR-----GSGLHGL-QSIKWKRNLCFSH-FTRSVLSKIKFSFLVKK 213


>gi|227876236|ref|ZP_03994352.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris ATCC 35243]
 gi|227843197|gb|EEJ53390.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris ATCC 35243]
          Length = 400

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 82/200 (41%), Gaps = 29/200 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA+SGG DS+ L   L    + R        A++VDH  R  +  E    +     L 
Sbjct: 48  LVVALSGGPDSLALAAGLLRAAT-RRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106

Query: 82  IAHSVVSWKNSKPQTGL--MAAAREARYALISEHA------KTINATLIMTAHTFDDQLE 133
            A + V  +   P+TG     +ARE R+ L++  A      + + +    T HT DDQ E
Sbjct: 107 YAQAKV-LRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAE 165

Query: 134 TVYMRSQRD---YAEKGMGLSGMCDTIL----------------YDLNLWISRPFLRCRR 174
           TV +R  R     A   M    M D+                   D+ +WISRP L  RR
Sbjct: 166 TVLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPPENSVKNDEDVLVWISRPLLGVRR 225

Query: 175 EDIRSFLLQRNISWCEDPSN 194
           E       Q  +    DP+N
Sbjct: 226 ETTHEACRQAGLIPAHDPTN 245


>gi|219682964|ref|YP_002469347.1| tRNA(Ile)-lysidine synthase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|254789033|sp|B8DWC0|TILS_BIFA0 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|219620614|gb|ACL28771.1| tRNA(Ile)-lysidine synthase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|289178276|gb|ADC85522.1| TilS [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 382

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS+ L      V +  ++G I+  AI VDH L++ +    +  +  C  L 
Sbjct: 45  VFVACSGGRDSLALAACAQVVCA--AWG-IRCGAIIVDHHLQDASHKVAQQTAQTCRDLG 101

Query: 82  IAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +    +V  +  +   G+ AAAREARYA +   A+  +AT ++ AHT DDQ E++ +   
Sbjct: 102 LEPVLIVDVQVKERGQGIEAAAREARYAALVGTARRWHATAVLLAHTKDDQAESILIDLI 161

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R  A      +GM  T L+D ++ + RP L   R           + + +DP+N D
Sbjct: 162 R--AAGTDAFAGMPQTQLFD-DVLVLRPLLGITRAQTTRICEDEGLEYWDDPTNGD 214


>gi|198276045|ref|ZP_03208576.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135]
 gi|198271674|gb|EDY95944.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135]
          Length = 426

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           +LVA+SGG+DS+ LL  L               A    HC   LR  E+ +DE R+V  +
Sbjct: 22  VLVALSGGADSVALLRVL----------LRLGYACEAAHCNFHLRGEESVRDE-RFVRAL 70

Query: 77  CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             RL +   V+ +      +     +  AARE RY   ++  +   A ++  AH  DD +
Sbjct: 71  AERLGVPLHVIHFDTNAYAASHNVSVEMAARELRYDWFTKLRQECGAKVVAVAHHRDDSV 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +   R     G G++G+    +  +N  + RP L   R +I  +L      +  D 
Sbjct: 131 ETFLLNLVR-----GTGINGL--QGIRPVNGDVVRPLLCVSRAEILDYLSSLGQDYVTDS 183

Query: 193 SNTDDRFERVRVR 205
           +N  D F R ++R
Sbjct: 184 TNLQDEFVRNKLR 196


>gi|229495229|ref|ZP_04388964.1| tRNA(Ile)-lysidine synthase [Porphyromonas endodontalis ATCC 35406]
 gi|229317672|gb|EEN83570.1| tRNA(Ile)-lysidine synthase [Porphyromonas endodontalis ATCC 35406]
          Length = 473

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 27/198 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVS 74
           A +LVA+SGG+D         SV    +     +  I++ HC   LR  E+ +DE ++  
Sbjct: 30  ASVLVALSGGAD---------SVALLLALQLANYRPIAI-HCNFHLRGEESLRDE-QFCR 78

Query: 75  DVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           D+  +L I   V  +      +  +  +  AARE RY +  + A       I  AH   D
Sbjct: 79  DLTDQLGIELEVHHFDTRAYAATHRLSVEMAARELRYQVFEQEASKRGIEAIAVAHHLQD 138

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+     R     G GL+G+   +    +  I RP L    ++I  FL      +C 
Sbjct: 139 NVETLLGNLSR-----GTGLTGLRGILPKRGS--IIRPLLDVHPKEIHDFLHLLGQPFCN 191

Query: 191 DPSNTDDRFERVRVRRFV 208
           D +N D   +R  +R  +
Sbjct: 192 DSTNQDTTIKRNAIRHSI 209


>gi|297627180|ref|YP_003688943.1| tRNA(Ile)-lysidine synthetase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922945|emb|CBL57527.1| TRNA(Ile)-lysidine synthetase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 329

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 74/191 (38%), Gaps = 12/191 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----RETAKDEVRYVSDVC 77
           + VA SGG DS+   +A    +  R    +   A+ VDH L    RE A   V  V  + 
Sbjct: 31  VRVACSGGPDSL--ALAAAVAVCARRDPALLAEALVVDHQLQPGSREVAHAAVDAVRGLG 88

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              R     V      P+    A           + A      L++  HT DDQ ETV +
Sbjct: 89  LPARTVAVQVPHSGEGPEA--AARRARYEALAAPDAAGGRRPDLVLLGHTLDDQAETVLL 146

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +   L+GM          W  RP L  RR D     ++  ++   DP N DD
Sbjct: 147 GLVRGSGIRS--LAGMPAHFGSAPQFW--RPLLGVRRADTERACVEWGLAPWHDPQNRDD 202

Query: 198 RFERVRVRRFV 208
           RF R R+R  V
Sbjct: 203 RFTRSRLRHRV 213


>gi|269976858|ref|ZP_06183832.1| tRNA(Ile)-lysidine synthase [Mobiluncus mulieris 28-1]
 gi|269934689|gb|EEZ91249.1| tRNA(Ile)-lysidine synthase [Mobiluncus mulieris 28-1]
          Length = 400

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 82/200 (41%), Gaps = 29/200 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA+SGG DS+ L   L    + R        A++VDH  R  +  E    +     L 
Sbjct: 48  LVVALSGGPDSLALAAGLLRAAT-RRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106

Query: 82  IAHSVVSWKNSKPQTGL--MAAAREARYALISEHA------KTINATLIMTAHTFDDQLE 133
            A + V  +   P+TG     +ARE R+ L++  A      + + +    T HT DDQ E
Sbjct: 107 YAQAKV-LRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAE 165

Query: 134 TVYMRSQRD---YAEKGMGLSGMCDTIL----------------YDLNLWISRPFLRCRR 174
           TV +R  R     A   M    M D+                   D+ +WISRP L  RR
Sbjct: 166 TVLLRLGRGASLLALSAMRPVDMLDSTSGLPRREEPPENSVKNDEDVLVWISRPLLGVRR 225

Query: 175 EDIRSFLLQRNISWCEDPSN 194
           E       Q  +    DP+N
Sbjct: 226 ETTHEACRQAGLIPAHDPTN 245


>gi|89898294|ref|YP_515404.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56]
 gi|89331666|dbj|BAE81259.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56]
          Length = 247

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA+SGG DS+ LL+ L ++ S R F ++   A+++       ++   +Y++++C +++
Sbjct: 37  IVVALSGGKDSLTLLLMLKAI-SGRGFPELDLYAVNIGGKYSCGSEVSQKYLANICDKIQ 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR--S 139
           +  + ++   S P+     +  + R  L+ + AK + A+ +   H  DD ++T  M    
Sbjct: 96  VPFTSIASPYS-PEVPECYSCSQVRRRLLFQAAKEVGASAVAFGHHRDDVVQTALMNLLH 154

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           + ++A    G+  +   + +D+   I RP +      IR F
Sbjct: 155 KAEFA----GMLPVLGMVHFDIT--ILRPLILTPESWIRKF 189


>gi|46117032|ref|XP_384534.1| hypothetical protein FG04358.1 [Gibberella zeae PH-1]
          Length = 742

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 19/156 (12%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--------AISVDHC 61
           RF       P  I++AVSGG DSM L   +   +  R F   K +        A+ VDH 
Sbjct: 95  RFPTARFARPQRIILAVSGGVDSMALAFLVSKFI--RMFRGSKVADNPVHGAMAVVVDHK 152

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSK-----PQT--GLMAAAREARYALISE 112
           LR+ +  E   V     +L I  +V  ++WK+ +     P+    +   AR  RY  +  
Sbjct: 153 LRDGSDLEAAGVVKELRKLDIKANVAPLAWKDERYNGLDPRKLPNVEGLARTYRYRALGR 212

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
             + + A  +  AH  DDQ ETV MR    +  +G+
Sbjct: 213 ICEFMGANSLFFAHHRDDQYETVLMRLLGGHGYRGL 248


>gi|118469721|ref|YP_890332.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2
           155]
 gi|118171008|gb|ABK71904.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2
           155]
          Length = 322

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 32/189 (16%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------ETAKDEVRYVSDV 76
           VA+SGG DS+    AL +V    +  +   +A+ VDH L+       ETA+ +   V  V
Sbjct: 28  VALSGGPDSL----ALTAV----AAAERPTTALIVDHGLQTGSRAVAETARAQALSVGCV 79

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            + +     VV  ++  P+    AAAR+ARY  +       +   ++  HT DDQ ETV 
Sbjct: 80  GAEI---IPVVVGRSGGPE----AAARKARYTALQ---AARDGAPVLLGHTLDDQAETVL 129

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G   +     +D   W  RP L  RR    +   +  +    DP N +
Sbjct: 130 LGLAR-----GSGPRSIAGMRPHDPP-W-HRPLLGIRRTVTHAACEELGLKPWHDPHNFE 182

Query: 197 DRFERVRVR 205
            RF R R+R
Sbjct: 183 PRFTRTRLR 191


>gi|304391052|ref|ZP_07373004.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325935|gb|EFL93181.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 415

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 29/215 (13%)

Query: 8   SVRFFVRSLVYPAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  ++SL  P   L+  A+SGG DS+ L  AL  V           S  +VDH  R  
Sbjct: 32  AVRRVLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPH-PWDVSCFTVDHGWRPE 90

Query: 66  AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHA------KTIN 118
           +  E +        L  + + V+  ++     G    AR  R+ L++  A      +  +
Sbjct: 91  SAAESQAAVQCARELGFSSAMVLRGESGGGANGPEGEARLLRWGLLARAAVAEAKAQGKD 150

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-------------------LY 159
             +I+T HT DDQ ETV +R  R  + + +      +T+                   + 
Sbjct: 151 HAVILTGHTLDDQAETVLLRLARGSSLRSIAAMREFETLDCKTGLPLRFAWREADSGAVA 210

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            ++L ++RP L  RRE  ++   Q  +    DPSN
Sbjct: 211 AVDLSLARPLLGIRRELTQAACEQAGLVAVNDPSN 245


>gi|307701216|ref|ZP_07638238.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris FB024-16]
 gi|307613610|gb|EFN92857.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris FB024-16]
          Length = 400

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 82/200 (41%), Gaps = 29/200 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA+SGG DS+ L   L    + R        A++VDH  R  +  E    +     L 
Sbjct: 48  LVVALSGGPDSLALAAGLLRAAT-RRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106

Query: 82  IAHSVVSWKNSKPQTGL--MAAAREARYALISEHA------KTINATLIMTAHTFDDQLE 133
            A + V  +   P+TG     +ARE R+ L++  A      + + +    T HT DDQ E
Sbjct: 107 YAQAKV-LRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAE 165

Query: 134 TVYMRSQRD---YAEKGMGLSGMCDTIL----------------YDLNLWISRPFLRCRR 174
           TV +R  R     A   M    M D+                   D+ +WISRP L  RR
Sbjct: 166 TVLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPLENSVKNDEDVLVWISRPLLGVRR 225

Query: 175 EDIRSFLLQRNISWCEDPSN 194
           E       Q  +    DP+N
Sbjct: 226 ETTHEACRQAGLIPAHDPTN 245


>gi|292489208|ref|YP_003532095.1| cell cycle protein [Erwinia amylovora CFBP1430]
 gi|292898558|ref|YP_003537927.1| tRNA(Ile)-lysidine synthase [Erwinia amylovora ATCC 49946]
 gi|291198406|emb|CBJ45513.1| tRNA(Ile)-lysidine synthase [Erwinia amylovora ATCC 49946]
 gi|291554642|emb|CBA22328.1| cell cycle protein [Erwinia amylovora CFBP1430]
          Length = 433

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 150/364 (41%), Gaps = 38/364 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++     +L     +L+A SGG DS  LL  L  +   R   +++  A+ + H L   
Sbjct: 1   MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQRP--QLQLRAVHIHHGLSPL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A   V +    C R R+   VV  +    + G+ AAAR+ARY  + +  +      ++TA
Sbjct: 59  ADGWVAHCQQQCDRWRVPLVVVRVQVDAREGGIEAAARQARYQALRQ--QLAAGETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+        +    +L   RP L   R+ + S+  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQQQLLGDHRHL---RPLLAQSRQQLESWAQRYQ 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I W ED SN D R++    R F+R   L  + L  +++      V  +  +   +     
Sbjct: 174 IGWIEDDSNLDPRYD----RNFLR---LQVMPLLNQRWPHFASAVARSAQLCGEQERL-- 224

Query: 246 MRSIIAISQDILNIDSTLLFY--LLRVSAA---------ICGGQISLPGYRSMERVMLFL 294
           +  ++A S D L  +S  L +  LL +S A         I     S+P   +++R+ L +
Sbjct: 225 LDELLAESLDALVDESGALCFTPLLTMSDARRSALLRRWIARQHGSMPSRAALQRIWLEV 284

Query: 295 ---KSGKRGCVSIGRVVIDR-RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350
              ++    C+ +G   + R R    W       LP  +        W   +Q   L D 
Sbjct: 285 ACSRADAEPCLRMGSREVRRFRDRLYW-------LPQRLPLGASQLAWPAPWQPLTLPDG 337

Query: 351 LIQI 354
           L Q+
Sbjct: 338 LGQL 341


>gi|298345496|ref|YP_003718183.1| tRNA(Ile)-lysidine synthetase [Mobiluncus curtisii ATCC 43063]
 gi|298235557|gb|ADI66689.1| tRNA(Ile)-lysidine synthetase [Mobiluncus curtisii ATCC 43063]
          Length = 415

 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 29/215 (13%)

Query: 8   SVRFFVRSLVYPAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  ++SL  P   L+  A+SGG DS+ L  AL  V           S  +VDH  R  
Sbjct: 32  AVRRVLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPH-PWDVSCFTVDHGWRPE 90

Query: 66  AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHA------KTIN 118
           +  E +        L  + + V+  ++     G    AR  R+ L++  A      +  +
Sbjct: 91  SAAESQAAVQCARELGFSSAMVLRGESGGGANGPEGEARLLRWGLLARAAVAEAKAQGKD 150

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-------------------LY 159
             +I+T HT DDQ ETV +R  R  + + +      +T+                   + 
Sbjct: 151 HAVILTGHTLDDQAETVLLRLARGSSLRSIAAMREFETLDCKTGLPLRFAWREADSGAVA 210

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            ++L ++RP L  RRE  ++   Q  +    DPSN
Sbjct: 211 AVDLSLARPLLGIRRELTQAACEQAGLVAVNDPSN 245


>gi|238810161|dbj|BAH69951.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 307

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 15/164 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++ FFV+  V   +IL  +SGG DSM LL        + ++ K     + +++  R  + 
Sbjct: 2   TLMFFVK--VNNMYIL-GISGGPDSMLLL-------HEYAYKKEPIFVVCINYNQRMDSH 51

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAH 126
            +V  V + C +  I + + ++     +TG     AR+ R  +  ++    NA+ I+ AH
Sbjct: 52  KDVEIVENYCKQNFIDYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAH 111

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             DD LE+ +M+     A++     G+  T +Y   L I RPF+
Sbjct: 112 HKDDFLESFFMQK---VAKRKPSFWGIKKTNIYKGCL-IERPFI 151


>gi|57168991|ref|ZP_00368120.1| conserved hypothetical protein [Campylobacter coli RM2228]
 gi|57019657|gb|EAL56346.1| conserved hypothetical protein [Campylobacter coli RM2228]
          Length = 321

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 24/200 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + SL+     L+A S GSDS  L    H ++      KI F  + +++  R+ +  E + 
Sbjct: 7   ILSLLKKGRNLLAFSYGSDSSALF---HFLVQK----KIDFDLVMINYKTRKNSDLEEQK 59

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             ++       H  +  K++    G     AR+ RY    +     N + ++ AH  +DQ
Sbjct: 60  SKELALEF---HKKIFIKSAPVIKGNFEKEARDFRYDFFEKICLEQNYSNLILAHHLNDQ 116

Query: 132 LETVYMRSQRDYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           LE   M+  R     G GL+   GM  C+      N  + RP L   +++I S+L + +I
Sbjct: 117 LEWFLMQLSR-----GAGLAEILGMQECEK---RSNYTLLRPLLFMSKDEILSYLKENDI 168

Query: 187 SWCEDPSNTDDRFERVRVRR 206
            + +D SN ++++ R  +R+
Sbjct: 169 FYFQDESNENEKYFRNYIRK 188


>gi|21221833|ref|NP_627612.1| hypothetical protein SCO3406 [Streptomyces coelicolor A3(2)]
 gi|256786987|ref|ZP_05525418.1| hypothetical protein SlivT_21069 [Streptomyces lividans TK24]
 gi|289770880|ref|ZP_06530258.1| tRNA(Ile)-lysidine synthase [Streptomyces lividans TK24]
 gi|61217439|sp|Q9X8I6|TILS_STRCO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|4808345|emb|CAB42759.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289701079|gb|EFD68508.1| tRNA(Ile)-lysidine synthase [Streptomyces lividans TK24]
          Length = 352

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 21/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G ++   ++VDH L+  +  ++R   +V  RLR
Sbjct: 53  VLVACSGGADSMALASAL--AFEAPRLG-VRAGGVTVDHGLQ--SGSDLR-AEEVVLRLR 106

Query: 82  -------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                   A +V   +   P+     AAR+ARYA +   A    A  ++  HT DDQ ET
Sbjct: 107 ELGLDPVEATAVTVGRAGGPEA----AARDARYAALDAAAARHGAAAVLLGHTRDDQAET 162

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   LSGM    +        RPFL+  R+  R   + +++   +DP N
Sbjct: 163 VLLGLARGSGIR--SLSGMA--AVSGAGGRYRRPFLQVDRQTARKACMVQSLPVWDDPHN 218

Query: 195 TDDRFERVRVR 205
            D  + R R+R
Sbjct: 219 ADPAYTRSRLR 229


>gi|171741155|ref|ZP_02916962.1| hypothetical protein BIFDEN_00222 [Bifidobacterium dentium ATCC
           27678]
 gi|171276769|gb|EDT44430.1| hypothetical protein BIFDEN_00222 [Bifidobacterium dentium ATCC
           27678]
          Length = 366

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 21/183 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L     +V +  S G ++  AI +DH L+  + +     +  C  L 
Sbjct: 45  IMVACSGGRDSMALAAVCATVCA--SLG-LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV-- 135
           +      ++    N +   GL AAAREARYA I E  +  +A  +++AHT +DQ ETV  
Sbjct: 102 LDPVRVRAIEVHGNGQ---GLEAAAREARYAAIVE--ECSDAAAVLSAHTKNDQAETVLI 156

Query: 136 -YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +RS    A  GM  S   D + +       RP+L   RE+         + W +DP+N
Sbjct: 157 GLLRSAGLDAIAGMEGSFSRDGVTF------LRPWLDVTREETTGICEDLGLEWWDDPTN 210

Query: 195 TDD 197
             D
Sbjct: 211 GPD 213


>gi|152988564|ref|YP_001346885.1| hypothetical protein PSPA7_1501 [Pseudomonas aeruginosa PA7]
 gi|150963722|gb|ABR85747.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 439

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 74/187 (39%), Gaps = 12/187 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS   ++        RS      SA+ V H L+  A     +   VC  L I 
Sbjct: 25  VAFSGGLDST--VLLHLLARLARSEALPALSALHVHHGLQTAADAWPAHCQAVCRSLGIP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISE--HAKTINATLIMTAHTFDDQLETVYMRSQR 141
             V      + Q  +  +  +A  A       A      +++TA   DDQ ET+  R  R
Sbjct: 83  LRV-----ERVQVAVTGSIEQAARAARYRAFQASLGEGQVLLTAQHLDDQAETLLFRLLR 137

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+        +       + RP L   R ++ ++     + W EDPSN D RF R
Sbjct: 138 GAGLRGLAAMPASRPLGGGR---LCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFAR 194

Query: 202 VRVRRFV 208
             +R+ V
Sbjct: 195 NYLRQEV 201


>gi|261749297|ref|YP_003256982.1| putative tRNA(Ile)-lysidine synthetase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497389|gb|ACX83839.1| putative tRNA(Ile)-lysidine synthetase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 440

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 26/200 (13%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDE 69
           SLV    I VAVSGG DSM LL  L  V +           + V HC      +E+ +DE
Sbjct: 19  SLVEKKKICVAVSGGLDSMVLLNLLLLVPN---------LTLGVAHCNFTLRDKESNEDE 69

Query: 70  VRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +V + C++  I   V  +     + + +  +  AAR+ RY       +  +   +   
Sbjct: 70  -NFVKNFCAKKHILCHVKRFNTFDFSKRNKFSIQMAARKLRYDWFENLLEKHSYDHMALG 128

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H   D +ET ++   R     G GL G+    +   N    RP     +E+I  +   + 
Sbjct: 129 HHLSDSVETFFINIMR-----GTGLKGLLG--IPRENRKFIRPLSSFTKEEILHYAKMKK 181

Query: 186 ISWCEDPSNTDDRFERVRVR 205
           ++W  D SN ++++ R ++R
Sbjct: 182 VNWRLDHSNQENKYLRNKIR 201


>gi|121613548|ref|YP_001001102.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|148925625|ref|ZP_01809313.1| hypothetical protein Cj8486_1491c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157415678|ref|YP_001482934.1| hypothetical protein C8J_1359 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005997|ref|ZP_02271755.1| hypothetical protein Cjejjejuni_07600 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249823|gb|EAQ72782.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|145845635|gb|EDK22726.1| hypothetical protein Cj8486_1491c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157386642|gb|ABV52957.1| hypothetical protein C8J_1359 [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 321

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 24/190 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S GSDS  L   L          KI F  + +++  R+ +  E     ++  +   
Sbjct: 17  LLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELKAKELALKF-- 67

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            H  +  K++ K Q+     AR+ RY    +         ++ AH  +DQ E   M+  R
Sbjct: 68  -HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQFEWFLMQLSR 126

Query: 142 DYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                G GL+   GM  C+      N  + RP L   +++I SFL +++I +  D SN +
Sbjct: 127 -----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIFYFHDESNEN 178

Query: 197 DRFERVRVRR 206
           +++ R  +R+
Sbjct: 179 EKYFRNYIRK 188


>gi|237752872|ref|ZP_04583352.1| tRNA-lysidine synthase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375139|gb|EEO25230.1| tRNA-lysidine synthase [Helicobacter winghamensis ATCC BAA-430]
          Length = 334

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 18/187 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S G DS  L   L      R  G I F    VD+ +R+ ++ EV     +C   + 
Sbjct: 16  LLAFSAGVDSSALYFLL------RECG-ISFDIAIVDYGIRKQSRLEVDRAKTLCFWDKR 68

Query: 83  AHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              V   K  +P        AR+ RYA   E  +  N   ++ AH  +D  E   M+   
Sbjct: 69  QCFV---KVEEPILKDFEHTARKVRYAFFEEIIQAQNYHNLILAHQLNDAFEWFLMQFC- 124

Query: 142 DYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               KG  L  M  C      ++  + RP L+  R++I  +L +R I + ED SN D +F
Sbjct: 125 ----KGSSLLKMQGCYKRQGIVDYRVVRPLLKTSRQEILEYLNKRKIFYFEDFSNLDSKF 180

Query: 200 ERVRVRR 206
            R   R+
Sbjct: 181 LRNAFRK 187


>gi|161504644|ref|YP_001571756.1| hypothetical protein SARI_02765 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865991|gb|ABX22614.1| hypothetical protein SARI_02765 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 365

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 27/250 (10%)

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R     G  LS M + 
Sbjct: 22  GIEAHAREARYRAFAQ--TLLPGEVLATAQHLDDQCETFLLALKRGSGPAG--LSAMGER 77

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
             +     + RP L   R+ +  + ++  + W ED SN DD ++    R F+R   L AL
Sbjct: 78  SPF-AGTQLLRPLLEETRKTLELWAVRHGLCWIEDESNQDDAYD----RNFLR---LRAL 129

Query: 217 YLKMKKFQDLRVKVNNAVAM------LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
            L  +++      V  + A+      L+ + LT  +   I  ++  L +   +    +R 
Sbjct: 130 PLLQRRWPHFSAAVARSAALCAEQERLLDELLTSDLTDCI-TARGTLRLSPLMSMSDVRR 188

Query: 271 SAA----ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR-RANFLWITRAV 322
           +A     +      +P   ++ER+   +   +     C+  G   I R ++   WI    
Sbjct: 189 AAILRRWLATRNAPMPSRDALERIWREVALARDDASPCLRFGDHEIRRYQSQLWWIKSIA 248

Query: 323 RNLPTLILYP 332
               T I +P
Sbjct: 249 GQSETTIAWP 258


>gi|307748319|gb|ADN91589.1| tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni M1]
 gi|315930961|gb|EFV09936.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 321

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 24/190 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S GSDS  L   L          KI F  + +++  R+ +  E     ++  +   
Sbjct: 17  LLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELKAKELALKF-- 67

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            H  +  K++ K Q+     AR+ RY    +         ++ AH  +DQ E   M+  R
Sbjct: 68  -HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQFEWFLMQLSR 126

Query: 142 DYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                G GL+   GM  C+      N  + RP L   +++I SFL +++I +  D SN +
Sbjct: 127 -----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIFYFHDESNEN 178

Query: 197 DRFERVRVRR 206
           +++ R  +R+
Sbjct: 179 EKYFRNYIRK 188


>gi|148244290|ref|YP_001218984.1| cell cycle protein MesJ [Candidatus Vesicomyosocius okutanii HA]
 gi|146326117|dbj|BAF61260.1| cell cycle protein MesJ [Candidatus Vesicomyosocius okutanii HA]
          Length = 390

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++ +SGG DS+ LL  L++   +      K   I  +H L +      ++    C  L 
Sbjct: 16  IVLGLSGGIDSIVLLHYLNTHYPN------KIRVIHCNHHLSQFCNKWDKFCKTTCLNLN 69

Query: 82  IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I +  +  S+ N+   + +   AR+ RY  +S   K     ++ TAH  +DQ ET+ ++ 
Sbjct: 70  IVYLSINLSFDNT---SNIEENARKKRYHSLSNLLKE--NEVLCTAHHKNDQAETLLLQL 124

Query: 140 QRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R     G+        +   I Y       RPFL   +  +  +     ++W ED SN 
Sbjct: 125 FRGSGSAGLAAMPKEKPLGKGIHY-------RPFLTINKSQVSDYANNHKLNWIEDDSNK 177

Query: 196 DDRFERVRVR 205
           +  F R  +R
Sbjct: 178 NTYFRRNFLR 187


>gi|306823453|ref|ZP_07456828.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Bifidobacterium dentium ATCC 27679]
 gi|309802756|ref|ZP_07696860.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium dentium JCVIHMP022]
 gi|304553160|gb|EFM41072.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Bifidobacterium dentium ATCC 27679]
 gi|308220820|gb|EFO77128.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium dentium JCVIHMP022]
          Length = 366

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 15/180 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L     +V +  S G ++  AI +DH L+  + +     +  C  L 
Sbjct: 45  IMVACSGGRDSMALAAVCATVCA--SLG-LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101

Query: 82  IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV---YM 137
           +    V + +    + GL AAAREARYA I E  +  +A  ++ AHT +DQ ETV    +
Sbjct: 102 LDPVRVRAIEVHGNEQGLEAAAREARYAAIVE--ECSDAAAVLLAHTKNDQAETVLIGLL 159

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           RS    A  GM  S   D + +       RP+L   RE+         + W +DP+N  D
Sbjct: 160 RSAGLDAIAGMEGSFSRDGVTF------LRPWLDVTREETTGICEDLGLEWWDDPTNGPD 213


>gi|308190379|ref|YP_003923310.1| cell cycle protein [Mycoplasma fermentans JER]
 gi|307625121|gb|ADN69426.1| cell cycle protein [Mycoplasma fermentans JER]
          Length = 304

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           FFV+  V   +IL  +SGG DSM LL        + ++ K     + +++  R  +  +V
Sbjct: 2   FFVK--VNNMYIL-GISGGPDSMLLL-------HEYAYKKEPIFVVCINYNQRMDSHKDV 51

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFD 129
             V + C +  I + + ++     +TG     AR+ R  +  ++    NA+ I+ AH  D
Sbjct: 52  EIVENYCKQNFIDYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKD 111

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           D LE+ +M+     A++     G+  T +Y   L I RPF+
Sbjct: 112 DFLESFFMQK---VAKRKPSFWGIKKTNIYKGCL-IERPFI 148


>gi|262369825|ref|ZP_06063152.1| tRNA(Ile)-lysidine synthetase [Acinetobacter johnsonii SH046]
 gi|262314864|gb|EEY95904.1| tRNA(Ile)-lysidine synthetase [Acinetobacter johnsonii SH046]
          Length = 448

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 82/188 (43%), Gaps = 19/188 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H L+  SGG DSM LL  +  +   R        AI +DH L++ +     +V + C  L
Sbjct: 32  HFLIGCSGGMDSMLLLHLMSHLFPKR------IRAIYIDHQLQDVSPQWGSFVQEQCYVL 85

Query: 81  RIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +   +   +     TG + + AR ARYA   +H   +   +++ AH   DQ ETV +R 
Sbjct: 86  DVPCVI---QAVDVDTGNVESQARSARYAAFQKH--LLANEILVLAHHQQDQAETVLLR- 139

Query: 140 QRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                  G G+ G+      D+     I RP L   R+ I  +  +  +   +D +N D 
Sbjct: 140 ----LLSGAGIHGLAAMQSIDIREQFTIWRPLLALSRQQIELWAAEMQLRNIQDQTNFDT 195

Query: 198 RFERVRVR 205
            ++R   R
Sbjct: 196 SYDRAWCR 203


>gi|134097007|ref|YP_001102668.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338]
 gi|291006247|ref|ZP_06564220.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338]
 gi|133909630|emb|CAL99742.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338]
          Length = 330

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV----- 76
           + VA SGG+DS+ L  A   V   R    I    + VDH L+E + D     ++      
Sbjct: 32  VAVACSGGADSLALAAATTHVARRRD---IAVHGLVVDHGLQEGSADVASRAAEQLEELG 88

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C  +R+   V   +   P+     A   A  A     A       ++  HT DDQ ETV 
Sbjct: 89  CDVVRVL-PVEIGREGGPEAAARRARYAALDAARPAGAP------VLLGHTRDDQAETVL 141

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G   +      DL  W+ RPFL   R+   +      +   +DP N+D
Sbjct: 142 LGLGR-----GSGARSIAGMRPVDLP-WL-RPFLDVTRDTTLAACEALGLRPWQDPHNSD 194

Query: 197 DRFERVRVRRFV 208
            +F RVR+R  V
Sbjct: 195 AKFTRVRLRAEV 206


>gi|221195339|ref|ZP_03568395.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Atopobium rimae
           ATCC 49626]
 gi|221185242|gb|EEE17633.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Atopobium rimae
           ATCC 49626]
          Length = 499

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 27/207 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHS----VLSDRSFGKI---KFSAISVDHCLR--ETAKDE--V 70
           +++ VSGG+DS  LL+   +    V   R   KI   +   + ++H LR  +  KDE  V
Sbjct: 1   MVLMVSGGADSTALLVMAATDVLDVQDGRGRAKIAQDRLCVLHINHQLRGADAEKDEQFV 60

Query: 71  RYVSDVCSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTI--------NATL 121
           R +S       +  S+ ++   +     +  A R  RY + ++ A  +         +  
Sbjct: 61  RTLSAKYGITCVTRSLDIASIAAADHLNVEDAGRRVRYEIANQLANELCEQAGVPRASAR 120

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+TAH  +D+ ET  M   R     G G SG+  +I    N  I RP L     ++ ++L
Sbjct: 121 IVTAHNANDRAETFLMNVTR-----GTGTSGLA-SIPRRRNR-IVRPLLGFTHLELCNYL 173

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
           ++R ISW ED +N D  + R  +R  +
Sbjct: 174 VERGISWREDLTNADTYYLRSYIRHEI 200


>gi|124026824|ref|YP_001015939.1| ATPase [Prochlorococcus marinus str. NATL1A]
 gi|254789040|sp|A2C5B5|TILS_PROM1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|123961892|gb|ABM76675.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. NATL1A]
          Length = 326

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 15/203 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A+SGG DSM L   L  ++  +   K +      +H     ++     +   C + +
Sbjct: 20  ILLAISGGQDSMAL---LKLIIDLKRLHKWQVEIWHGNHQWHSKSEKTEEELKLWCLKNQ 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-------TLIMTAHTFDDQLET 134
           I  S  S K  K +      AR+ RY  +   AK +++       T I+T HT  D+ ET
Sbjct: 77  I--SFHSNKADKKEVANEEKARDWRYKNLIMKAKFLSSKNIHFPCTRILTGHTATDRAET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V M   R       GL+ + +    + N+ ++RP L   R +        N+    DPSN
Sbjct: 135 VIMNLAR--GTDLTGLTTLKEQRTIESNIDLTRPLLIFNRNETLEICKDFNLPIWIDPSN 192

Query: 195 TDDRFERVRVRRFVRDIDLHALY 217
            +    R ++R+ +  I L+++Y
Sbjct: 193 ENINLTRNKIRKEILPI-LNSIY 214


>gi|118602173|ref|YP_903388.1| tRNA(Ile)-lysidine synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567112|gb|ABL01917.1| tRNA(Ile)-lysidine synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 390

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 22/191 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++ +SGG DS+ LL  L++   +++        I  +H L +   +  ++   +C  L 
Sbjct: 16  IVLGLSGGIDSVVLLYYLNTHYPNKT------RVIHYNHHLSQYCNEWNKFCEKLCLSLN 69

Query: 82  IAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I + S+  + N+   + +    R+ RY  +S   K     ++ TAH  +DQ ET+ ++  
Sbjct: 70  ITYLSIDLYFNN--TSNIEENTRKKRYHSLSNSLKK--NEVLCTAHHQNDQAETLLLQLF 125

Query: 141 RDYAEKGMGLSGMCDTILYD-LNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R     G G+ G+        L + I  RPFL   +  I  +     ++W ED SN +  
Sbjct: 126 R-----GSGIKGLAAMPKEKPLGMGIHYRPFLTISKFQIIDYAKNNKLNWIEDDSNKNTN 180

Query: 199 FERVRVRRFVR 209
           F    +R F+R
Sbjct: 181 F----MRNFLR 187


>gi|119478960|ref|XP_001259509.1| PP-loop family protein [Neosartorya fischeri NRRL 181]
 gi|119407663|gb|EAW17612.1| PP-loop family protein [Neosartorya fischeri NRRL 181]
          Length = 638

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+++ +AVSGG+DSM L      +        +  +A  VDH  RE +  E R V+   S
Sbjct: 45  PSNLGLAVSGGADSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARNVATWLS 104

Query: 79  RLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            + +   +  + W      +     AR  R+  +    +    + ++  H  DD +ET  
Sbjct: 105 DMGLQAQILELEWPQGSSVSAFETHARRLRFQALGIACRDRRISALLMGHHQDDNVETTL 164

Query: 137 MRSQRDYAEKGMGLSGM 153
            R       +G GL+G+
Sbjct: 165 WR--LCTGARGAGLAGI 179


>gi|86151954|ref|ZP_01070167.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124890|ref|YP_004066894.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841062|gb|EAQ58311.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018612|gb|ADT66705.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 321

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 24/190 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S GSDS  L   L          KI F  + +++  R+ +  E     ++  +   
Sbjct: 17  LLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSDLEELKAKELALKF-- 67

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            H  +  K++ K Q+     AR+ RY    +         ++ AH  +DQ E   M+  R
Sbjct: 68  -HKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHHLNDQFEWFLMQLSR 126

Query: 142 DYAEKGMGLS---GM--CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                G GL+   GM  C+      N  + RP L   +++I SFL +++I +  D SN +
Sbjct: 127 -----GAGLAEILGMQECEK---RSNYTLLRPLLFISKDEISSFLKEKDIFYFHDESNEN 178

Query: 197 DRFERVRVRR 206
           +++ R  +R+
Sbjct: 179 EKYFRNYIRK 188


>gi|46446494|ref|YP_007859.1| hypothetical protein pc0860 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400135|emb|CAF23584.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 246

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 78/183 (42%), Gaps = 8/183 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL  L ++ S R F  ++  AI V       A     Y+  +C  + 
Sbjct: 37  IAVALSGGKDSLTLLYLLKAI-SGRGFPNLEIHAIHVSGEFSCGAGVNEDYLRAICQEIG 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  +         +    + +RE R  L+ E AK++  T I   H  DD  +TV M    
Sbjct: 96  VQLTTRISTQKLEKLECYSCSRERRR-LLFEAAKSLGITTIAFGHHRDDHTQTVLM---- 150

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS--WCEDPSNTDDRF 199
           +   K      +    + +  + I RP +    ++IR+F  Q+  +   C  P   +   
Sbjct: 151 NLLHKAEFAGNLPKIHMQEYGVTIIRPLIYIAEKNIRTFAQQQGFARIMCRCPVGQNSMR 210

Query: 200 ERV 202
           ++V
Sbjct: 211 KQV 213


>gi|148378008|ref|YP_001256884.1| hypothetical protein MAG_7460 [Mycoplasma agalactiae PG2]
 gi|148292054|emb|CAL59446.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
          Length = 286

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 17/218 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DSM LL  + S  SD           +V++ +R+ +  +V  V   C    
Sbjct: 2   ILLGISGGPDSMYLLDLISSQRSD-------IVVATVNYNVRQDSAYDVEIVRKFCEDKG 54

Query: 82  IAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I    +         G     ARE R+A   +  +  N   +  AH  DD LE+ +M+ +
Sbjct: 55  IIFECLEIDQKACFKGNFEKWAREQRFAFFKKIYEKYNCEALYLAHHKDDFLESYFMQKE 114

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                   G+     T  Y   + + RP + +  + +I   L  + I +  D +N    +
Sbjct: 115 SKRQPDFFGIK----TENYIYGMKVVRPLVGKVFKNEILEALHNKKIKYANDYTNDLPIY 170

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            R R+R +++ +       K K F D++ K NN +A L
Sbjct: 171 TRNRIRIWLKSLSNSQ---KSKIFDDVQ-KENNELAEL 204


>gi|126454111|ref|YP_001066846.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106a]
 gi|242315465|ref|ZP_04814481.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106b]
 gi|126227753|gb|ABN91293.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106a]
 gi|242138704|gb|EES25106.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106b]
          Length = 492

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NTD R+ R  +R
Sbjct: 197 NTDTRYARNALR 208


>gi|76811958|ref|YP_334064.1| cell cycle protein mesJ [Burkholderia pseudomallei 1710b]
 gi|167916722|ref|ZP_02503813.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 112]
 gi|217420494|ref|ZP_03451999.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 576]
 gi|226199017|ref|ZP_03794580.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pakistan
           9]
 gi|254191453|ref|ZP_04897957.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pasteur
           52237]
 gi|254197535|ref|ZP_04903957.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei S13]
 gi|254258079|ref|ZP_04949133.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1710a]
 gi|76581411|gb|ABA50886.1| cell cycle protein mesJ [Burkholderia pseudomallei 1710b]
 gi|157939125|gb|EDO94795.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pasteur
           52237]
 gi|169654276|gb|EDS86969.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei S13]
 gi|217395906|gb|EEC35923.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 576]
 gi|225929117|gb|EEH25141.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pakistan
           9]
 gi|254216768|gb|EET06152.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1710a]
          Length = 492

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NTD R+ R  +R
Sbjct: 197 NTDTRYARNALR 208


>gi|53723754|ref|YP_103279.1| cell cycle protein mesJ [Burkholderia mallei ATCC 23344]
 gi|67642950|ref|ZP_00441700.1| tRNA(Ile)-lysidine synthase [Burkholderia mallei GB8 horse 4]
 gi|121601180|ref|YP_993468.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei SAVP1]
 gi|124383414|ref|YP_001029100.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10229]
 gi|126448974|ref|YP_001080976.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10247]
 gi|167001800|ref|ZP_02267592.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei PRL-20]
 gi|254177526|ref|ZP_04884181.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei ATCC 10399]
 gi|254200231|ref|ZP_04906597.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei FMH]
 gi|254209311|ref|ZP_04915657.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei JHU]
 gi|254358020|ref|ZP_04974293.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei 2002721280]
 gi|61216458|sp|Q62J40|TILS_BURMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52427177|gb|AAU47770.1| cell cycle protein mesJ [Burkholderia mallei ATCC 23344]
 gi|121229990|gb|ABM52508.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei SAVP1]
 gi|124291434|gb|ABN00703.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10229]
 gi|126241844|gb|ABO04937.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10247]
 gi|147749827|gb|EDK56901.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei FMH]
 gi|147750084|gb|EDK57155.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei JHU]
 gi|148027147|gb|EDK85168.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei 2002721280]
 gi|160698565|gb|EDP88535.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei ATCC 10399]
 gi|238524177|gb|EEP87611.1| tRNA(Ile)-lysidine synthase [Burkholderia mallei GB8 horse 4]
 gi|243062485|gb|EES44671.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei PRL-20]
          Length = 489

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NTD R+ R  +R
Sbjct: 197 NTDTRYARNALR 208


>gi|294664722|ref|ZP_06730052.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605500|gb|EFF48821.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 418

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 133/335 (39%), Gaps = 29/335 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS    + LH + +   +      A+ V H L   A     +    C  L+
Sbjct: 1   MLLAYSGGMDSS---VLLHLLAAASRYRHAGLRALHVHHGLHADADAWAAHCQRTCDALQ 57

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +V  + ++  +GL   A        +     I    +  AH  DDQ ET  +R+ R
Sbjct: 58  VPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLLRALR 116

Query: 142 DYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
             A    GL+ M          LW  RP L   R D+ ++     + W +DPSN D   +
Sbjct: 117 --ASGPEGLAAMRPQRPFASGTLW--RPMLAHARADLLAYAHAHGLRWIDDPSNADPHHD 172

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHMRSIIAISQ-- 254
               R F+R   +  L  +  +  D   +      +A A+L+ + + + + S+I  S   
Sbjct: 173 ----RNFLRSQIVPLLQQRWPQATDALARSAQLSADASALLLQQDMAL-LPSVITASGAL 227

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVMLFLKSGKRGCVSIGRVVID 310
           D+  + +  +    R+  A      + P    G  ++E+ +    + +  C +  +V + 
Sbjct: 228 DLQALRAQPVERRARLLRAWVSAAHAPPLPAHGVAALEQEIDNHAADRHACFAWQQVEVR 287

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
           R    L++ RA    P+     +    WDG    Q
Sbjct: 288 RWRQCLFLHRAAAAWPS-----DWHAQWDGAAPLQ 317


>gi|155370502|ref|YP_001426036.1| hypothetical protein FR483_N404R [Paramecium bursaria Chlorella
           virus FR483]
 gi|155123822|gb|ABT15689.1| hypothetical protein FR483_N404R [Paramecium bursaria Chlorella
           virus FR483]
          Length = 513

 Score = 49.7 bits (117), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 105/238 (44%), Gaps = 27/238 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +++++SGGSDSM     +H +    +FG      + V++  R++A  E  +V+D  +
Sbjct: 208 PTKLIMSISGGSDSMVAFHIIHGL--KEAFG-YDIDVVMVNYTNRDSAYAEEAFVADWVN 264

Query: 79  RLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                  V            N++ +T      R+ RYA      KT+    ++  H  DD
Sbjct: 265 SFGYPLHVRRIDEIKRKQCANNQLRTVYEKYTRDVRYATY----KTLGPHPVVMGHNKDD 320

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LE +         +K   LSGM DT++    +   RP L   + DI ++  +  I +  
Sbjct: 321 CLENILQNIGS--CQKYDNLSGM-DTLVVQDGIPFFRPLLDVSKNDIVAYAREHQIPFL- 376

Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYL----KMKK-FQDLRVKVNNAVAMLIPKY 241
            P++T    +R ++R  V  +  D + L++    ++KK   D+   V  +V M +  +
Sbjct: 377 -PNSTPPTMKRGQIRNKVAPVLNDWNELFVPGLFQLKKTMADMHKVVEKSVEMFVGNF 433


>gi|288927672|ref|ZP_06421519.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288330506|gb|EFC69090.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 453

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 21/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRL 80
           LVA+SGG+DS+ L   L  +         K  A+  +  LR  E+ +DE  +  ++C   
Sbjct: 25  LVALSGGADSVALFRMLLRL-------DYKVDAVHCNFKLRGEESFRDEA-FCENLCREH 76

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +A   V +  ++     +  +  AARE RY    +    ++   I  AH  DD +ET+ 
Sbjct: 77  GVAFHTVHFDTAEYAALHKLSIEMAARELRYNHFEKLRNDLDMDGICVAHHQDDNVETML 136

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G GLSG+  T +   N  + RP L      +  +L      +  D +N  
Sbjct: 137 INLIR-----GTGLSGL--TGMKPRNGHVLRPLLAVSHAHLLDYLQALGQPYVTDSTNLT 189

Query: 197 DRFERVRVR 205
             F R ++R
Sbjct: 190 TDFTRNKIR 198


>gi|167739278|ref|ZP_02412052.1| putative cell cycle protein [Burkholderia pseudomallei 14]
          Length = 489

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALVDVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NTD R+ R  +R
Sbjct: 197 NTDTRYARNALR 208


>gi|134277776|ref|ZP_01764491.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 305]
 gi|254297086|ref|ZP_04964539.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 406e]
 gi|134251426|gb|EBA51505.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 305]
 gi|157807057|gb|EDO84227.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 406e]
          Length = 489

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NTD R+ R  +R
Sbjct: 197 NTDTRYARNALR 208


>gi|269796486|ref|YP_003315941.1| tRNA(Ile)-lysidine synthetase [Sanguibacter keddieii DSM 10542]
 gi|269098671|gb|ACZ23107.1| tRNA(Ile)-lysidine synthetase [Sanguibacter keddieii DSM 10542]
          Length = 344

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 17/181 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +LVA SGG+DS+ L  A  +       G ++  A+ VDH ++  + +     +  C  
Sbjct: 29  ALVLVACSGGADSLAL--AATTAFEAPRLG-LRAGAVVVDHQVQTGSAEVAAEAAGRCRD 85

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-----LIMTAHTFDDQLET 134
           L +   VV  +     TG  +   EA        A    A      +++  HT DDQ ET
Sbjct: 86  LGLGPVVV--RTVDVPTGPGSGGPEAAARHARYAALEAAADAEGAEVVLLGHTADDQAET 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   L+GM D +      W  RP L  RR +  +    + + W  DP+N
Sbjct: 144 VLLGLARGSGAR--SLAGMRDAV----GRW-RRPLLGLRRTETEAVCAAQGLGWWVDPTN 196

Query: 195 T 195
            
Sbjct: 197 A 197


>gi|237812903|ref|YP_002897354.1| tRNA(Ile)-lysidine synthase [Burkholderia pseudomallei MSHR346]
 gi|237506736|gb|ACQ99054.1| tRNA(Ile)-lysidine synthase [Burkholderia pseudomallei MSHR346]
          Length = 489

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NTD R+ R  +R
Sbjct: 197 NTDTRYARNALR 208


>gi|224418853|ref|ZP_03656859.1| hypothetical protein HcanM9_06215 [Helicobacter canadensis MIT
           98-5491]
 gi|253828158|ref|ZP_04871043.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142371|ref|ZP_07804564.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511564|gb|EES90223.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131402|gb|EFR49019.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 329

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 14/194 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  L+A SGG DS  L   L      +S+G I F    VD+ +R+ +  E+     +C  
Sbjct: 15  AKNLLAFSGGLDSTALYFLL------KSYG-IAFDIAIVDYGIRQQSHLEISRAKTLC-- 65

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
                   + K  K      A AR  RY   +      +   ++ AH  +D LE   M+ 
Sbjct: 66  FWDNKQCYTLKAPKINKNFEANARAIRYDFFTSLVSQNSYQNLILAHQLNDNLEWFLMQF 125

Query: 140 QRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  + + M +     ++ +  N    +I RP +   R  ++ +L    I + ED SN D
Sbjct: 126 CKGTSIENMQIPP--KSLFWKQNQKTCYILRPMIFLPRITLQMYLQTHKIFYFEDSSNAD 183

Query: 197 DRFERVRVRRFVRD 210
             ++R   R++  +
Sbjct: 184 TAYKRNYFRKYFAN 197


>gi|296128486|ref|YP_003635736.1| tRNA(Ile)-lysidine synthetase [Cellulomonas flavigena DSM 20109]
 gi|296020301|gb|ADG73537.1| tRNA(Ile)-lysidine synthetase [Cellulomonas flavigena DSM 20109]
          Length = 386

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 5/134 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +LVA SGG+DS+ L   L     D   G  +  A+ VDH L++ + D  +  +  C R
Sbjct: 26  ATVLVACSGGADSLALAAGLAWEAQD---GGWRAGAVVVDHGLQDGSHDVAQEAAAACRR 82

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +    V   +     G  AAAR ARYA +   A  ++AT ++  HT DDQ ETV +  
Sbjct: 83  LGLDPVRVVRVDVGTAGGPEAAARSARYAALDAAADELDATAVLLGHTLDDQAETVLLAL 142

Query: 140 QRDYAEKGMGLSGM 153
            R   E+   L+GM
Sbjct: 143 ARGSGER--ALAGM 154


>gi|53719849|ref|YP_108835.1| putative cell cycle protein [Burkholderia pseudomallei K96243]
 gi|254184420|ref|ZP_04891010.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1655]
 gi|61216466|sp|Q63ST1|TILS_BURPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52210263|emb|CAH36242.1| putative cell cycle protein [Burkholderia pseudomallei K96243]
 gi|184214951|gb|EDU11994.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1655]
          Length = 489

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NTD R+ R  +R
Sbjct: 197 NTDTRYARNALR 208


>gi|300870722|ref|YP_003785593.1| putative cell cycle protein MesJ [Brachyspira pilosicoli 95/1000]
 gi|300688421|gb|ADK31092.1| putative Cell cycle protein, MesJ [Brachyspira pilosicoli 95/1000]
          Length = 455

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 20/200 (10%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRLR 81
           VA SGG DS  LL   + +    ++  I   AI V++ LR  E+  DE+ +  +      
Sbjct: 39  VAYSGGIDSQVLLNIAYKLKDKLNYNLI---AIHVNYNLRGEESIGDEM-FARETAKNYN 94

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISE-HAKTINATLIMTAHTFDDQLETVYMRS 139
           I   V    K S         AR+ RY    E + K I   L++ AH  DD  ET+  R 
Sbjct: 95  IDIYVKHIEKGSYNNKNTQLEARKDRYLFFKELYNKKIYDYLLI-AHNKDDLTETIIYRM 153

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                 KG G +      L     ++ RP L   R+DI  +  + ++S  ED SN  +++
Sbjct: 154 I-----KGSGTN--IYKALSKKRKYVLRPILNFYRKDIEEYAKENSLSHREDSSNKTNKY 206

Query: 200 ERVRVRRFV----RDIDLHA 215
            R ++R  +     +I+L A
Sbjct: 207 SRNKLRNVIIPMLEEINLQA 226


>gi|15618181|ref|NP_224466.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|15835796|ref|NP_300320.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|16752779|ref|NP_445047.1| hypothetical protein CP0500 [Chlamydophila pneumoniae AR39]
 gi|33241603|ref|NP_876544.1| YdaO [Chlamydophila pneumoniae TW-183]
 gi|4376533|gb|AAD18410.1| PP-Loop Superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189418|gb|AAF38329.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8978634|dbj|BAA98471.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|33236111|gb|AAP98201.1| YdaO [Chlamydophila pneumoniae TW-183]
          Length = 244

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA+SGG DS+ LL+ L ++ S R F  +   A+++       A+    Y++ +C +L 
Sbjct: 37  IVVALSGGKDSLTLLLMLKAI-SGRGFPDLDLHAVNIGGKYSCGAEVNKPYLTRICDQLC 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I    +    + P+T       +AR  L+ + AK I A+ I   H  DD ++T  +    
Sbjct: 96  IPFRTIPSPYA-PETPECYPCSQARRRLLFQAAKEIGASAIAFGHHRDDLVQTALLNLLH 154

Query: 142 DYAEKGM 148
                GM
Sbjct: 155 KAEFAGM 161


>gi|119962110|ref|YP_945961.1| tRNA(Ile)-lysidine synthetase [Arthrobacter aurescens TC1]
 gi|119948969|gb|ABM07880.1| putative tRNA(Ile)-lysidine synthetase [Arthrobacter aurescens TC1]
          Length = 356

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 10/194 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           S  YP+ +LVA SGG DS+ L                 +  + + VDH L+  + +    
Sbjct: 7   SAGYPSRVLVACSGGPDSLALAAVAAYFARRGHVDGHPVSVAGVVVDHQLQAGSAEVAAR 66

Query: 73  VSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + V   L ++   V + + +    G  AAAR+AR+A +   A  +    I+  HT DDQ
Sbjct: 67  TASVLRELGLSPVEVRTVEVASTGFGPEAAARDARHAALESAADHLGCDAILLGHTLDDQ 126

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E V +   R    +   L+GM           + RPFL  RRE+         +    D
Sbjct: 127 AEQVLLGLARGSGTR--SLAGM-----RPARGRLLRPFLGLRREETLEICEVEELDPWHD 179

Query: 192 PSNTDDRFERVRVR 205
           PSN D  F R R R
Sbjct: 180 PSNADPAFARSRTR 193


>gi|315503391|ref|YP_004082278.1| tRNA(ile)-lysidine synthetase [Micromonospora sp. L5]
 gi|315410010|gb|ADU08127.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. L5]
          Length = 316

 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 9/203 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L     +LVA SGG+DS+ L  A   V      G+ +   ++VDH L+  + 
Sbjct: 4   AVRRVLTGLPGGGPVLVACSGGADSLALAAATAFVAP--RLGR-QAGLVTVDHGLQAGSA 60

Query: 68  DEVRYVSD--VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +    V+D      L     +    + +P     AA      ALI+  A+  +A  ++  
Sbjct: 61  ERAEAVADWARAEGLDPVEVLPVRVDGRPGGPEAAAREARYEALIAA-ARRYDAAGVLLG 119

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV +   R    +  GLSGM +    D  + + RP L   R D R+      
Sbjct: 120 HTRDDQAETVLLALARGAGPR--GLSGMPERRDVD-GVPLLRPLLDVPRADTRAACEALG 176

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           +    DP N D  + R RVR  V
Sbjct: 177 LDPWADPHNADPAYARARVRSDV 199


>gi|258567614|ref|XP_002584551.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237905997|gb|EEP80398.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 775

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +P+ + +AVSGG DSM L      +  +     +K  A+ VDH  R+ + DE   V+   
Sbjct: 30  FPSRVALAVSGGPDSMALAHLCRKLTVEGYIPDLKVIALIVDHKSRKGSADEALRVAGWI 89

Query: 78  SRLRIAHSVVS--W----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             + +   +++  W    K+    +     AR+ RY  +     + N   ++  H  DD 
Sbjct: 90  QEMGLTPEILTLKWPAEAKDPSKLSNFETLARKLRYQALGTACTSANIQTLLLGHHRDDN 149

Query: 132 LETVYMRSQRDYAEKGMGLSG 152
           +ET  +R  + +  +  GL+G
Sbjct: 150 IETGLLRLSQGH--RRFGLAG 168


>gi|303232429|ref|ZP_07319121.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae PB189-T1-4]
 gi|302481513|gb|EFL44581.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae PB189-T1-4]
          Length = 482

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 34/210 (16%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETAKDEVR-YVSDVC 77
           VSGG+DS+ L +   S   D   G+        + + + V+H LR +A DE   YV  + 
Sbjct: 2   VSGGADSVALTVLACSRPLDLRDGRGPVRINPARLAILHVNHGLRGSAADEDESYVRLLA 61

Query: 78  SRLRIAHSV-----------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL----- 121
               I   V            +  +    + + A  R+ RY   ++ A+ +         
Sbjct: 62  GHFHIPCYVEHVNVAQLAKKQAAAHRGASSNIEAVGRQVRYDCATKLARQLCTQTHTRYA 121

Query: 122 ---IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I+TAHT +D+ ET  +      A +G GL+G+  +I     + I RP L    E++ 
Sbjct: 122 DARIVTAHTANDRAETFLIN-----ATQGSGLAGL-SSIPRKRQI-IVRPLLDFTHEELC 174

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             L +++I W ED +N D  + R  +R  V
Sbjct: 175 DILSKQDIPWHEDETNKDTWYMRAYMRHAV 204


>gi|257463149|ref|ZP_05627550.1| cell cycle protein MesJ [Fusobacterium sp. D12]
          Length = 409

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 24/181 (13%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIA-----HSV 86
           M +L+ L   LS       +   + + H +R E A+++  +  D   +  +        V
Sbjct: 1   MEMLLKLQEQLS------FQMLLLHLHHMIRQEAAEEDYLFCLDYAKKKNLEIIARKMDV 54

Query: 87  VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146
            S+   + Q+ L  A R  RY    +  K      I TAH  DD LET + R  R  + +
Sbjct: 55  PSYAKKEGQS-LEEAGRILRYQFFYQIQKQRAYHKIATAHHLDDHLETFFFRLLRGSSME 113

Query: 147 GM-GLS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
           G+ G+S    D I         RP     + +I S+L +  I++C+D +N +  + R R+
Sbjct: 114 GLAGISRKQADKI---------RPLRDFEKAEILSYLERHQIAYCKDKTNEETEYSRNRI 164

Query: 205 R 205
           R
Sbjct: 165 R 165


>gi|254252011|ref|ZP_04945329.1| hypothetical protein BDAG_01221 [Burkholderia dolosa AUO158]
 gi|124894620|gb|EAY68500.1| hypothetical protein BDAG_01221 [Burkholderia dolosa AUO158]
          Length = 468

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 19/207 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVALADMPSDARIAIAYSGGLDSTVLLDA-----AVRVAGASRCIALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122
           A     +     +RL +A    S +   P+    G+ A+ARE+RYA +    +   A  +
Sbjct: 69  ANAWAAHAQATATRLGVAFE--SMRVDVPRDSGLGIEASARESRYAALDAMCEAHGAAAL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
             A   DDQ ETV ++  R     G G++G+            ++   RP LR  R  + 
Sbjct: 127 WIAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPGGASVERVRPLLRLLRAQLE 181

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
            +  QR+++W +D SN D R+ R  +R
Sbjct: 182 RYAAQRDLAWIDDESNGDTRYARNALR 208


>gi|325109969|ref|YP_004271037.1| tRNA(Ile)-lysidine synthase [Planctomyces brasiliensis DSM 5305]
 gi|324970237|gb|ADY61015.1| tRNA(Ile)-lysidine synthase [Planctomyces brasiliensis DSM 5305]
          Length = 332

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 10/189 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCS 78
            ++VAVSGG+DS+ LL     +  +    +++      +H  R  E  +D + ++  +C+
Sbjct: 23  QLMVAVSGGADSIALLRGCVFLAEE---CELRLVVAHFNHRTRPGENERD-LEWLQALCT 78

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +L +   V   ++S+  T       R+AR     + A++     +  AH  DDQ ETV  
Sbjct: 79  QLAVPF-VAGERDSQASTSSSENELRQARRRFFIDTARSREIGTVCFAHHADDQAETVLH 137

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     GM  +GM +       +   RP L    + +R FL + +    ED SN   
Sbjct: 138 RLCRGTGLAGM--TGMQEVSSLAEGIVAFRPLLGLPGQALRDFLSEIDQPHREDASNASS 195

Query: 198 RFERVRVRR 206
           ++ R R+R+
Sbjct: 196 QYTRNRIRQ 204


>gi|331091115|ref|ZP_08339957.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405337|gb|EGG84873.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 244

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 18/200 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL ALH +   + F   K + SAI+VD    +    ++  V ++C 
Sbjct: 25  HIAVGISGGKDSLTLLYALHGL---KRFYPKKFELSAITVDLGYSDF---DLTPVENLCR 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + + +V           + ++   +   + R   ++E  K +    +  AH  DD +
Sbjct: 79  ELDVPYKIVKTDIGRILFEERKESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKDDII 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   S    T L  ++L + RP +     D+  F  + N+   ++ 
Sbjct: 139 ETMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPMMFVDEADVIGFKNKYNLPVVKNK 194

Query: 193 SNTDDRFERVRVRRFVRDID 212
            + D   +R   +  V+ ++
Sbjct: 195 CSVDGHTKRQYAKELVKQLN 214


>gi|329768244|ref|ZP_08259745.1| hypothetical protein HMPREF0428_01442 [Gemella haemolysans M341]
 gi|328837443|gb|EGF87072.1| hypothetical protein HMPREF0428_01442 [Gemella haemolysans M341]
          Length = 438

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 78/188 (41%), Gaps = 10/188 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + +SGG DS   ++  H +++       +     ++H LRE + +E  +V +      
Sbjct: 13  IALGLSGGVDS---IVLFHLLVTKYKESYKELVVFHINHGLREQSYEEAEFVENFVKNYN 69

Query: 82  IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +         ++      T     AR+ RY    E +       ++TAH  +DQ+E + M
Sbjct: 70  VKFYKKELNMNELARDSHTSEEMLARKLRYEAFEEMSSLEGGVKLITAHHKNDQVENILM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R     + + M  + M +       L + RP L   + ++  +  + N+ +  D +N D 
Sbjct: 130 RL---LSGRSMDYNLMIEEQTTIGELEVYRPLLSVLKAELEQYADENNLKYYVDSTNFDT 186

Query: 198 RFERVRVR 205
            + R  +R
Sbjct: 187 DYTRNNIR 194


>gi|319777782|ref|YP_004137433.1| tRNA(ile)-lysidine synthase [Mycoplasma fermentans M64]
 gi|318038857|gb|ADV35056.1| tRNA(Ile)-lysidine synthase [Mycoplasma fermentans M64]
          Length = 296

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 12/149 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DSM LL        + ++ K     + +++  R  +  +V  V + C +  I
Sbjct: 3   ILGISGGPDSMLLL-------HEYAYKKEPIFVVCINYNQRMDSHKDVEIVENYCKQNFI 55

Query: 83  AHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            + + ++     +TG     AR+ R  +  ++    NA+ I+ AH  DD LE+ +M+   
Sbjct: 56  DYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKDDFLESFFMQK-- 113

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             A++     G+  T +Y   L I RPF+
Sbjct: 114 -VAKRKPSFWGIKKTNIYKGCL-IERPFI 140


>gi|296126844|ref|YP_003634096.1| tRNA(Ile)-lysidine synthetase [Brachyspira murdochii DSM 12563]
 gi|296018660|gb|ADG71897.1| tRNA(Ile)-lysidine synthetase [Brachyspira murdochii DSM 12563]
          Length = 450

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 16/189 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRLR 81
           VA SGG DS  +L   + +  D SF  I    I V++ LR  ++  DE+ +  ++  +  
Sbjct: 23  VAYSGGIDSQVMLNIAYRLKDDLSFNLI---IIHVNYNLRGEDSTNDEL-FAREMAKKYN 78

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISE-HAKTINATLIMTAHTFDDQLETVYMRS 139
           I   V    +NS     +   AR  RYA   E + K I   L++ AH  DD  ET+  R 
Sbjct: 79  IDIYVKEIPQNSYIGKNIQLEARNDRYAFFEELYNKKIYDYLLI-AHNKDDLAETIIYRM 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                 KG G +      L     +I RP L   R+DI  +    +++  ED SN  + +
Sbjct: 138 I-----KGAGTNVYKS--LRGKKGYILRPILNFYRKDIEIYAQVNSLTHREDYSNKKNYY 190

Query: 200 ERVRVRRFV 208
            R ++R  +
Sbjct: 191 ARNKIRNLI 199


>gi|157953860|ref|YP_001498751.1| hypothetical protein AR158_C670L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068508|gb|ABU44215.1| hypothetical protein AR158_C670L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 504

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 84/198 (42%), Gaps = 21/198 (10%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V P  I +++SGG DSM L   L  +   R F   K +   V++  R  A DE  +V+D 
Sbjct: 195 VKPGEITMSLSGGVDSMTLFHILDGL---RGFYDYKMNVAMVNYTNRVCAYDEEYFVTDW 251

Query: 77  CSRLRIAHSV--VSWKNSKP------QTGLMAAAREARYALISEHAKTIN-ATLIMTAHT 127
            + L    SV  +   N KP      +T      R+ RY       KTI+    +   H 
Sbjct: 252 ANWLGYPISVRRIEEINRKPCIDADIRTLYETYTRKVRYNTY----KTISREAFVAMGHN 307

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD LE +          K   L+GM D ++    +   RP L   ++DI  +    NI 
Sbjct: 308 KDDCLENILQNICS--GHKYDNLNGM-DIVVVQDGIKFFRPLLDVSKDDIIEYARGHNIP 364

Query: 188 WCEDPSNTDDRFERVRVR 205
           +   P++T   F+R  VR
Sbjct: 365 YL--PNSTPAHFKRGMVR 380


>gi|269303137|gb|ACZ33237.1| PP-loop family protein [Chlamydophila pneumoniae LPCoLN]
          Length = 244

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 2/116 (1%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA+SGG DS+ LL+ L ++ S R F  +   A+++       A+    Y++ +C +L 
Sbjct: 37  IVVALSGGKDSLTLLLMLKAI-SGRGFPDLDLHAVNIGGKYSCGAEVNKPYLTRICDQLC 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I    +    + P+T       +AR  L+ + AK I A+ I   H  DD ++T  +
Sbjct: 96  IPFRTIPSPYA-PETPECYPCSQARRRLLFQAAKEIGASAIAFGHHRDDLVQTALL 150


>gi|312138048|ref|YP_004005384.1| tRNA(ile)-lysidine synthase [Rhodococcus equi 103S]
 gi|311887387|emb|CBH46699.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus equi 103S]
          Length = 329

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 94/207 (45%), Gaps = 21/207 (10%)

Query: 6   IESVRFFVRSLV---YPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           I  VR  VR+ +   +PA  ++VA+SGG+DS+ L +A  +V    S       A+ VDH 
Sbjct: 16  ILEVRHAVRAWLARHHPAGGVVVALSGGADSLALTVA--AVAEAPSV-----RAVVVDHR 68

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           L++ + +     +        A + V   +     GL AAAR ARYA +           
Sbjct: 69  LQDGSAEVAAVAAARALEFGCAGADVVPVDVTGPGGLEAAARAARYAALD---AARAGRP 125

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G  + GM     YD   W  RP L  RR+  R   
Sbjct: 126 VLLGHTLDDQAETVLLGLAR--GSGGRSIRGMAG---YDAP-W-GRPLLGVRRDVTRRAC 178

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  +   EDP N D  F RVR+R  V
Sbjct: 179 AELGLVAHEDPHNADPAFTRVRLRTEV 205


>gi|167816493|ref|ZP_02448173.1| putative cell cycle protein [Burkholderia pseudomallei 91]
          Length = 417

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NTD R+ R  +R
Sbjct: 197 NTDTRYARNALR 208


>gi|318077182|ref|ZP_07984514.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. SA3_actF]
          Length = 259

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+   A  I+  HT DDQ ETV +   R    +   LSGM +  +        RPFLR  
Sbjct: 49  AEKHGAAAILLGHTRDDQAETVLLGLARGSGTR--SLSGMAE--ISGPGGRYRRPFLRID 104

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           R+  R   + +++   +DP NTD  + R R+R
Sbjct: 105 RQTARKACMVQSLPVWDDPHNTDPAYTRSRLR 136


>gi|282895983|ref|ZP_06304014.1| PP-loop protein [Raphidiopsis brookii D9]
 gi|281199093|gb|EFA73963.1| PP-loop protein [Raphidiopsis brookii D9]
          Length = 335

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 31/205 (15%)

Query: 14  RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVR 71
           R L  P  H+LVA+SGG DS+ L+     +L D     K K +    DH  RE ++    
Sbjct: 17  RHLFAPHEHLLVALSGGQDSLCLI----KLLVDLQVKWKWKLAIAHCDHRWREDSQANAD 72

Query: 72  YVSDVCS------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +V ++ +       L+IA   V   NS+        AR  RY +  E A+      I+T 
Sbjct: 73  HVKNLATSWDLPFHLQIAIDPV---NSE------GDARNWRYRVFREIAEDYGYKYIVTG 123

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRPFLRCRREDIRSFL 181
           HT  D+ ET+     R     G G  G+  ++ +  +L     + RP L   RE    F 
Sbjct: 124 HTSSDRAETLIYNLIR-----GTGADGL-QSLTWQRSLGEKTMLVRPLLEITREQTGKFC 177

Query: 182 LQRNISWCEDPSNTDDRFERVRVRR 206
              ++    D +N + ++ R R+R+
Sbjct: 178 QDLDLPVWVDSTNQNLQYPRNRIRQ 202


>gi|269469148|gb|EEZ80693.1| tRNA(Ile)-lysidine synthetase [uncultured SUP05 cluster bacterium]
          Length = 391

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 18/188 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +I++A+SGG DS+ LL  L++  S    GK++  A+  +H L +   +   +  ++C  L
Sbjct: 15  NIVLALSGGIDSVVLLHYLNTHFS----GKLR--AVHCNHHLSKHCSEWDEFCKNLCQSL 68

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I +  +     K  + L   AR+ RY  +S         ++ TAH  +DQ ET+ ++  
Sbjct: 69  SIDYLNIDIF-IKNDSNLEENARKKRYHSLS--CNLEENEVLCTAHHQNDQAETLLLQLF 125

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWIS---RPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R     G G++G+  ++  +  L      RP L   +  I  +  +  + W ED SN + 
Sbjct: 126 R-----GSGVAGLA-SMPKEKTLGKGIHYRPMLSLNKTQIIDYAKKYKLRWIEDDSNKNT 179

Query: 198 RFERVRVR 205
            F R  +R
Sbjct: 180 DFRRNFLR 187


>gi|94985096|ref|YP_604460.1| tRNA(Ile)-lysidine synthetase-like protein [Deinococcus
           geothermalis DSM 11300]
 gi|94555377|gb|ABF45291.1| tRNA(Ile)-lysidine synthetase-like protein and cytosine deaminase
           [Deinococcus geothermalis DSM 11300]
          Length = 539

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 74/183 (40%), Gaps = 20/183 (10%)

Query: 30  SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW 89
           +DS+ LL AL  VL     G    +A  +DH LR  +  +  +V  +   L +       
Sbjct: 30  ADSVALLRAL--VL----VGAQPVTA-HLDHALRPDSAQDAAWVQTLAEELGVPFEAARV 82

Query: 90  KNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145
             +         L  AAR  RY  +   A+   A  I+TAHT  DQ ETV +   R  A 
Sbjct: 83  DVAAVAARRGWNLEDAARRVRYEFLGRVARQHRAEAILTAHTRRDQAETVLLGLLRGEA- 141

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
                     T +  +   + RP+L   R D+ ++L      W ED +N D    R  +R
Sbjct: 142 --------VLTGIPPIRGRVRRPWLDVSRADVEAWLRSLGQDWREDSTNADPAQTRAWLR 193

Query: 206 RFV 208
             V
Sbjct: 194 TVV 196


>gi|91772989|ref|YP_565681.1| hypothetical protein Mbur_0991 [Methanococcoides burtonii DSM 6242]
 gi|91712004|gb|ABE51931.1| PP-loop family protein [Methanococcoides burtonii DSM 6242]
          Length = 302

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 13/127 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL  LH +   R    I+  A+++D  +    ++ +     + S L 
Sbjct: 52  IAVALSGGKDSVVLLYLLHKIFGVRR--DIEIVALTIDEGIAGYREETLAKARKLTSELG 109

Query: 82  IAHSVVSWKNSKPQT--GLMAAARE---------ARYALISEHAKTINATLIMTAHTFDD 130
           I H V S+K+   +T   L A  R+          R +L+++ A  I A  + T H  DD
Sbjct: 110 IRHIVRSFKDEYDKTLDELTAQERKLGACSYCGVLRKSLMNKIANEIGANKLATGHNLDD 169

Query: 131 QLETVYM 137
           + +T+ M
Sbjct: 170 EAQTIMM 176


>gi|21228898|ref|NP_634820.1| hypothetical protein MM_2796 [Methanosarcina mazei Go1]
 gi|20907428|gb|AAM32492.1| conserved protein [Methanosarcina mazei Go1]
          Length = 302

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 13/136 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS   L  +H +L DR    I+  AISVD  +       +     +   L 
Sbjct: 52  IAVALSGGKDSSVALYIMHKILGDRP--DIQIVAISVDEGIHGYRPQSLELAKQLTEALG 109

Query: 82  IAHSVVSWKNSKPQT--GLMAAAREA---------RYALISEHAKTINATLIMTAHTFDD 130
           + H + S+K+    T   L    RE          R ++++  A  I AT ++T H  DD
Sbjct: 110 VRHIIKSFKDEHGATMDELAVMDREKGTCSYCGVLRKSILNRVAIEIGATKLVTGHNLDD 169

Query: 131 QLETVYMRSQRDYAEK 146
           + +T+ +   R   E+
Sbjct: 170 EAQTILLNHFRGDMER 185


>gi|167830049|ref|ZP_02461520.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 9]
          Length = 424

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NTD R+ R  +R
Sbjct: 197 NTDTRYARNALR 208


>gi|220917561|ref|YP_002492865.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955415|gb|ACL65799.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 450

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 12/193 (6%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L  PA  +LVA+SGG+DS  LL AL ++    +  +++  A+ +DH LR  ++ E   
Sbjct: 20  RRLFGPADRVLVALSGGADSTALLAALAALRDAGALAEVR--ALYLDHGLRAGSEPEAAS 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               C+RL +   +   + +     + A AR  RYA + E A    A+ I T HT  DQ 
Sbjct: 78  ARAACARLGV--PLEERRLAVGAGNVQAEARRVRYAALREAAARAGASRIATGHTLGDQA 135

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +R  R    +G+         +      + RP +   RE+  ++L    + W +DP
Sbjct: 136 ETVLLRLLRGAGARGL-------AAIPPRRGPVIRPLIDRTREEGNAYLRAMGLGWADDP 188

Query: 193 SNTDDRFERVRVR 205
           +N    + R R+R
Sbjct: 189 TNAVPGYARNRLR 201


>gi|322390535|ref|ZP_08064053.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC
           903]
 gi|321142809|gb|EFX38269.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC
           903]
          Length = 424

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 24/188 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVSDV-C 77
           +LVA+SGG DSM L   L+    ++   KI      V+H  R   +  + E+R ++D   
Sbjct: 21  VLVALSGGLDSMNLYELLYK---NKERLKIHLVLAHVNHGQRPESDLEESELRTLADRRE 77

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +R+ +AH    +  +K        AR  RY    +  +  + T ++T H  +DQ ET +M
Sbjct: 78  TRIHVAHYSGDFTEAK--------ARTFRYDFFKQIMEKEDCTALVTGHHANDQAETTFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    K   LSG+     +     I RP L   ++++        I   ED SN   
Sbjct: 130 RLIR--GTKLRHLSGIPVRQPFGKGELI-RPLLTFTKDELMK------IPHFEDSSNDSQ 180

Query: 198 RFERVRVR 205
            + R RVR
Sbjct: 181 DYFRNRVR 188


>gi|187479043|ref|YP_787067.1| tRNAIle-lysidine synthetase ( cell cycle protein) [Bordetella avium
           197N]
 gi|115423629|emb|CAJ50169.1| tRNAIle-lysidine synthetase (putative cell cycle protein)
           [Bordetella avium 197N]
          Length = 341

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 20/205 (9%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           VR  +  L   A + +A+S G+DS  L +A   +   R        A+ V H L+  A +
Sbjct: 18  VRATLARLPSQAPVALALSAGADSAMLAVAARLLAPQRP-----LLALHVHHGLQAQADE 72

Query: 69  EVRYVSDVCSRL----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
             +    +   L    RIAH  V    S    G+ AAAR ARYA ++  A+   A  ++ 
Sbjct: 73  WAQRAQALGGLLELPVRIAHVKVPADGS----GIEAAARTARYAALAAMAREAGAGHVLL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI----RSF 180
           AH  DDQ ETV +R  R    +GM  + M +    D  L++ RP+L   R  I    ++F
Sbjct: 129 AHHRDDQAETVLLRLLRGAGVEGM--AAMREASPRDGLLYL-RPWLDLGRAAIVQAAQAF 185

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
                    +DPSN D R+ R  VR
Sbjct: 186 AALTGWQAVQDPSNVDPRYTRAAVR 210


>gi|125622900|ref|YP_001031383.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491708|emb|CAL96627.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069638|gb|ADJ59038.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 422

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 24/206 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +   ++F  +    + IL+A+SGG DSM L   L+ +   R+   I+     ++H 
Sbjct: 8   FLKIVTKEKYFAEN----SKILLALSGGKDSMTLFNWLYEL---RAKLHIELGIAHINHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINA 119
           LR  +  E + +  + S L I   V  +      TG      ARE RY    +     N 
Sbjct: 61  LRPESDFEEQALRKMASDLEIPIFVDRF------TGEFTEQKAREFRYHFFEKIMIAENY 114

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            +++TAH   D +ETV MR  +        L G+ D   +     I RP L+  +E++ +
Sbjct: 115 DVLLTAHHQGDVVETVLMR--QITGRPLRSLQGIADCQPFAKGQLI-RPLLKFTKEELDA 171

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR 205
            +      + ED +N    + R R+R
Sbjct: 172 AV------FYEDSTNQGVDYFRNRIR 191


>gi|262203875|ref|YP_003275083.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247]
 gi|262087222|gb|ACY23190.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247]
          Length = 317

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 24/191 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+ V +SGG DS+ L  A            ++ +A+ VDH L+  + D     +     L
Sbjct: 24  HVCVGLSGGPDSLALTAAAVRA-------GLRVTALVVDHGLQANSADVASTAAATARAL 76

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
             A  ++  +  +   GL AAAR ARY+ +       + + ++  HT DDQ ETV +   
Sbjct: 77  GAAAVILPVRVGR-DGGLEAAARAARYSALD---AARDGSPVLLGHTMDDQAETVLLGLA 132

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWI---SRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R    +   ++GM          W     RP L  RR    +   +  ++   DP N D 
Sbjct: 133 RGSGARS--IAGM--------RTWTPPWGRPLLGVRRTQTAAMCAELGLTPYADPHNRDP 182

Query: 198 RFERVRVRRFV 208
           RF RVRVR  V
Sbjct: 183 RFTRVRVRTDV 193


>gi|283455476|ref|YP_003360040.1| lysidine synthetase [Bifidobacterium dentium Bd1]
 gi|283102110|gb|ADB09216.1| Putative lysidine synthetase [Bifidobacterium dentium Bd1]
          Length = 366

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 21/183 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L     +V +  S G ++  AI +DH L+  + +     +  C  L 
Sbjct: 45  IMVACSGGRDSMALAAVCATVCA--SLG-LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV-- 135
           +      ++    N +   GL AAAREARYA I E  +  +A  ++ AHT +DQ ETV  
Sbjct: 102 LDPVRVRAIEVHGNGQ---GLEAAAREARYAAIVE--ECSDAAAVLLAHTKNDQAETVLI 156

Query: 136 -YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +RS    A  GM  S   D + +       RP+L   RE+         + W +DP+N
Sbjct: 157 GLLRSAGLDAIAGMEGSFSRDGVTF------LRPWLDVTREETTGICEDLGLEWWDDPTN 210

Query: 195 TDD 197
             D
Sbjct: 211 GPD 213


>gi|322388490|ref|ZP_08062093.1| tRNA(Ile)-lysidine synthetase [Streptococcus infantis ATCC 700779]
 gi|321140803|gb|EFX36305.1| tRNA(Ile)-lysidine synthetase [Streptococcus infantis ATCC 700779]
          Length = 425

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 18/196 (9%)

Query: 12  FVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           F+    +  H  +++A+SGG DSM L   L   L+ +    I+     V+H  R  +  E
Sbjct: 10  FLEKGYFEGHSRVVLALSGGLDSMFLFQLL---LTYQKELDIELFLAHVNHKQRPESDKE 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              +  +  +  +   V  +     +      AR+ RY    E  +  ++T ++TAH  D
Sbjct: 67  ENELRKLAEQAGVPIYVACFTGDFSEVN----ARQFRYEFFREVMEKTSSTALVTAHHAD 122

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ+ET++MR  R    +   LS + +  ++     I RP L   ++D         I   
Sbjct: 123 DQVETIFMRLIR--GVRLQHLSAIKERQIFAKGELI-RPLLSFYKKDFPE------IEHF 173

Query: 190 EDPSNTDDRFERVRVR 205
           ED +N ++ + R R+R
Sbjct: 174 EDSTNKENHYLRNRIR 189


>gi|296875509|ref|ZP_06899581.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC
           15912]
 gi|296433433|gb|EFH19208.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC
           15912]
          Length = 424

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 24/188 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRYVSDV-C 77
           +LVA+SGG DSM L   L+    ++   KI      V+H  R   +  + E+R ++D   
Sbjct: 21  VLVALSGGLDSMNLYELLYK---NKERLKIHLVLAHVNHGQRPESDLEESELRTLADRRE 77

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +R+ +AH    +  +K        AR  RY    +  +  + T ++T H  +DQ ET +M
Sbjct: 78  TRIHVAHYSGDFTEAK--------ARTFRYDFFKQIMEKEDCTALVTGHHANDQAETTFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    K   LSG+     +     I RP L   ++++        I   ED SN   
Sbjct: 130 RLIR--GTKLRHLSGIPVRQPFGKGELI-RPLLTFTKDELME------IPHFEDSSNDSQ 180

Query: 198 RFERVRVR 205
            + R RVR
Sbjct: 181 DYFRNRVR 188


>gi|227888869|ref|ZP_04006674.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
 gi|227850562|gb|EEJ60648.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
          Length = 118

 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS+ LL  L + L + S   I      +DHCLR+ +  E + +  + S L++
Sbjct: 21  LLAASGGPDSVALLKMLVNFLPNPSEQLI---VAHLDHCLRDDSFLESQLLQRLTSALKV 77

Query: 83  AHSVVSWK-NSKPQTGLMAAAREARYALISE 112
                 W     PQ G+ A ARE RYA ++E
Sbjct: 78  KLVEKKWPVELHPQAGVEAKAREYRYAFLAE 108


>gi|303314295|ref|XP_003067156.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240106824|gb|EER25011.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|320037424|gb|EFW19361.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 815

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P +I +AVSGG DSM L      ++ +     +   A  VDH  RE + DE   V+    
Sbjct: 40  PRNIALAVSGGPDSMALAHLCRRLIVEGHIPDLNVKAFIVDHKAREKSTDEALKVAGWIK 99

Query: 79  RLRIAHSVVS--W----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            + +   V++  W    K+          AR  RY  +     T N   +   H  DD +
Sbjct: 100 SMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHRDDNV 159

Query: 133 ETVYMRSQRDYAEKGMGLSG 152
           ET  +R  + +     GL+G
Sbjct: 160 ETALLRLAQGHGR--FGLAG 177


>gi|212550361|ref|YP_002308678.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548599|dbj|BAG83267.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 447

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 21/192 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77
           A I+V VSGG DS  LL  LH +         K  A   +  LR  E+ +DE ++ + + 
Sbjct: 24  AKIVVGVSGGVDSSVLLYILHHL-------GYKCQAAHCNFHLRGDESCRDE-KHAALLA 75

Query: 78  SRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           S + +      +       + +  +  AAR  RY       +  NA +I  AH   D +E
Sbjct: 76  SSMNLVFFKKDFNTQYLAQRNKISIEMAARVLRYKWFEYLRQEQNAEVIAVAHHKGDNIE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G G+ G+    +   +  I RP L   R++I  F     I + +D S
Sbjct: 136 TLLLNLVR-----GTGIRGLKG--IRPKHGKIIRPLLDITRQEIVQFAKDNRIVYVDDSS 188

Query: 194 NTDDRFERVRVR 205
           N +++  R ++R
Sbjct: 189 NFEEKHIRNKIR 200


>gi|157147380|ref|YP_001454699.1| tRNA(Ile)-lysidine synthetase [Citrobacter koseri ATCC BAA-895]
 gi|157084585|gb|ABV14263.1| hypothetical protein CKO_03178 [Citrobacter koseri ATCC BAA-895]
          Length = 440

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 11/189 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYV 73
           SL+    ILVA SGG DS    + LH ++  R     +   AI + H L   A   V + 
Sbjct: 11  SLLPYRQILVAFSGGLDST---VLLHQLVQWREQQPDVTLRAIHIHHGLSSHADSWVTHC 67

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQL 132
             VC + ++   V   +  + Q   +    +AR A  +  A+ ++   +++TA   DDQ 
Sbjct: 68  EAVCQQWQVPLVV---RRVQLQDEGLGIEAQARQARYAAFAQALHPGEVLVTAQHLDDQC 124

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G  LS M +   +     I RP L   R  +  +  +  + W ED 
Sbjct: 125 ETFLLALKRGSGPAG--LSAMGERSSFAGTQLI-RPLLGETRAALEQWAKRYALRWIEDE 181

Query: 193 SNTDDRFER 201
           SN DD ++R
Sbjct: 182 SNQDDVYDR 190


>gi|296273321|ref|YP_003655952.1| PP-loop domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296097495|gb|ADG93445.1| PP-loop domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 250

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 17/186 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV  SGG DS  L+ AL+ +     F   +F A++V + + E    +V ++S  C++  
Sbjct: 28  VLVGFSGGKDSTTLIHALNHIKKVTPF-DFEFKAVTVTYGMGE----QVEFLSKHCAKHG 82

Query: 82  IAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++       S +  +  +   +     R   +   A+      +   H  DD +E+
Sbjct: 83  IEHEIIDTEIFELSKEKIRKNSSFCSFFSRMRRGYLYSTAQEQGYNKLALGHHLDDAMES 142

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            +M    ++   G  L  M      +  L + RP + CR   +R+F     IS   D + 
Sbjct: 143 FFM----NFLYNG-ALRSMPPRYKAENGLEVIRPLIFCRERQLRAFAQTNEISVIGDEAC 197

Query: 195 TDDRFE 200
              RF+
Sbjct: 198 PAMRFD 203


>gi|108796755|ref|YP_636527.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum]
 gi|122211731|sp|Q32RJ9|TILS_ZYGCR RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61393739|gb|AAX45881.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum]
          Length = 420

 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 20/145 (13%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +S+++P   IL+AVSGG DS+ LL  L+ +   RS    K   +  DH     +  +  +
Sbjct: 49  KSILHPYQRILIAVSGGQDSICLLNILNKL---RSTWHWKLGIVHCDHKWYLDSALQAIH 105

Query: 73  VSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           VS + + ++I    A +  S  N +        AR  RY LI   A   N ++I+T HT 
Sbjct: 106 VSRLAANMQIDLYQALTTQSVNNEQ-------LARNWRYELIRHVAICHNFSVIVTGHTA 158

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGM 153
            D++ET+     R     G G+SG+
Sbjct: 159 SDRVETLIYNLIR-----GSGISGL 178


>gi|326799033|ref|YP_004316852.1| tRNA(Ile)-lysidine synthase [Sphingobacterium sp. 21]
 gi|326549797|gb|ADZ78182.1| tRNA(Ile)-lysidine synthase [Sphingobacterium sp. 21]
          Length = 443

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 25/191 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR-ETAKDEVRYVSDVCS 78
           L+AVSGG DS+ L++ L        F K K     + HC   LR + A  +   V ++ +
Sbjct: 24  LLAVSGGRDSV-LMVHL--------FAKAKL-PFGIAHCNFQLRGQHADADEELVRNLAA 73

Query: 79  RLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            + +   V  +       K    +  AAR  RY    +     +   I  AH  +D +ET
Sbjct: 74  EMEVPLFVKRFDTIAYAKKQGISIEMAARALRYEWFEQIRSDQHYRYIALAHHQNDSVET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R     G G++G+   IL    + I RP L   RE++   +L+RN+ + ED SN
Sbjct: 134 VLLNLTR-----GTGIAGL-HGILPKRGVLI-RPLLFLTREEVTQTVLERNLVYREDESN 186

Query: 195 TDDRFERVRVR 205
               + R ++R
Sbjct: 187 FSTDYLRNKIR 197


>gi|116510859|ref|YP_808075.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106513|gb|ABJ71653.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 422

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 20/204 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +   ++F  +    + IL+A+SGG DSM L   L+ +   R+   I+     ++H 
Sbjct: 8   FLKIVTKEKYFAEN----SKILLALSGGKDSMTLFNWLYEL---RAKLHIELGIAHINHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  +  E + +  + S L I   V  +     +      ARE RY    +     N  +
Sbjct: 61  LRPESDFEEQSLRKMASDLEIPIFVDRFSGEFTEQ----KAREFRYHFFEKIMIAENYDV 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH   D +ETV MR  +        L G+ D   +     I RP L+  +E++ + +
Sbjct: 117 LLTAHHQGDVVETVLMR--QITGRPLRSLQGIADCQPFAKGQLI-RPLLKFTKEELDAAV 173

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
                 + ED +N    + R R+R
Sbjct: 174 ------FYEDSTNQGVDYFRNRIR 191


>gi|304314090|ref|YP_003849237.1| ATPase [Methanothermobacter marburgensis str. Marburg]
 gi|302587549|gb|ADL57924.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg]
          Length = 314

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 13/126 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG DS+ ++  +   L +R+   I+  A+++D  +    +D +R     C+   
Sbjct: 51  VLVGLSGGKDSV-MVTDILDELRNRNI--IELEAVTIDEGISGYREDGIRAAGRFCAERG 107

Query: 82  IAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           I H VV  K+            P  G        R  +++  A+   AT I T H  DD+
Sbjct: 108 IPHRVVKLKDYAGITLDEIMKNPSRGACTYCGVFRRWILNREARKSGATKIATGHNLDDE 167

Query: 132 LETVYM 137
            + + M
Sbjct: 168 CQAIVM 173


>gi|15679734|ref|NP_276852.1| hypothetical protein MTH1742 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622874|gb|AAB86212.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 270

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 13/127 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +LV +SGG DS+ ++I +   L +R+   I+  A+++D  +    +D VR    +C+  
Sbjct: 15  RVLVGLSGGKDSV-MVIDILDELRERNI--IELEAVTIDEGIGGYREDGVRIARKICADR 71

Query: 81  RIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            I H VVS ++            P           R  +++  A+   AT I T H  DD
Sbjct: 72  GIPHRVVSLEDYAGITLDEIMKNPSRSACTYCGVFRRWILNREARKSKATKIATGHNLDD 131

Query: 131 QLETVYM 137
           + + + M
Sbjct: 132 ETQAIVM 138


>gi|172037514|ref|YP_001804015.1| putative cell cycle control PP-loop ATPase MesJ/YaeO [Cyanothece
           sp. ATCC 51142]
 gi|171698968|gb|ACB51949.1| putative cell cycle control PP-loop ATPase MesJ/YaeO [Cyanothece
           sp. ATCC 51142]
          Length = 323

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 15/196 (7%)

Query: 15  SLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--V 70
           SL+ P   ++L+AVSGG DS+ LL  +  +     +       +++ HC    A D    
Sbjct: 16  SLILPRKNNLLIAVSGGQDSLCLLKLMIDLQKKWGWN------LAIGHCDHGWASDLGIA 69

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +V ++ +  +I   +   K ++      AAARE RY  + E AK    T ++T HT  D
Sbjct: 70  DHVRELANDWQIPFYL---KVAEAMEETEAAAREWRYHSLIEIAKEHQFTEVLTGHTLSD 126

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           + ET+     R     G+G       +   +NL   RP L+  R +   F  Q ++   E
Sbjct: 127 RAETLLYNLIRGAGSNGLGALTWKRPLTNKINL--VRPLLKVSRSETLEFCKQFSLPIWE 184

Query: 191 DPSNTDDRFERVRVRR 206
           D  N +  + R R+R+
Sbjct: 185 DAVNANLDYARNRIRQ 200


>gi|300088508|ref|YP_003759030.1| tRNA(Ile)-lysidine synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528241|gb|ADJ26709.1| tRNA(Ile)-lysidine synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 479

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 23/190 (12%)

Query: 28  GGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRIAHSV 86
           GG+DS+ LL  LH   S  + G I+F    ++H LR    D +  +V  +  RL +  ++
Sbjct: 34  GGADSVCLLHILHKYQS--ALG-IEFHVAHLNHGLRGGDADADAEFVRALAERLGLEATI 90

Query: 87  ----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
               V+   ++    L  AARE RY  ++E   T     +  AHT +D +ETV +   R 
Sbjct: 91  EKRDVAGYRARHGLTLEEAAREVRYRFLAE---TAGGDTVAVAHTRNDHVETVMLHLLR- 146

Query: 143 YAEKGMGLSGM-----CDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
               G GLSG+       T+ +    +L I RP +   R ++ ++     + + +D +N 
Sbjct: 147 ----GTGLSGLVGLKEASTLSHKRITSLKIIRPLICLTRAEVEAYCRASGLEYRDDATNE 202

Query: 196 DDRFERVRVR 205
                R R+R
Sbjct: 203 SLTPTRNRIR 212


>gi|297201398|ref|ZP_06918795.1| tRNA(Ile)-lysidine synthase [Streptomyces sviceus ATCC 29083]
 gi|197713806|gb|EDY57840.1| tRNA(Ile)-lysidine synthase [Streptomyces sviceus ATCC 29083]
          Length = 350

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 20/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL         G ++   ++VDH L+  +  ++R   +V  RLR
Sbjct: 48  VLVACSGGADSMALASAL--AFEAPKLG-LRAGGVTVDHGLQPGS--DLR-AEEVVLRLR 101

Query: 82  -------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                   + +V   +   P+     A   A  A          A  ++  HT DDQ ET
Sbjct: 102 ELGLDPVESTAVTVGREGGPEAAARDARYAALDAAAERQ----GAIAVLLGHTRDDQAET 157

Query: 135 VYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           V +   R    +   LSGM   +          RPFL   R+  R   + +++   +DP 
Sbjct: 158 VLLGLARGSGIR--SLSGMAAVSGGPGAARRYRRPFLGLDRQTARKACMVQSLPVWDDPH 215

Query: 194 NTDDRFERVRVR 205
           NTD  + R R+R
Sbjct: 216 NTDPAYTRSRLR 227


>gi|145596819|ref|YP_001161116.1| tRNA(Ile)-lysidine synthetase [Salinispora tropica CNB-440]
 gi|189035971|sp|A4XCT1|TILS_SALTO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|145306156|gb|ABP56738.1| tRNA(Ile)-lysidine synthetase [Salinispora tropica CNB-440]
          Length = 333

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 97/211 (45%), Gaps = 15/211 (7%)

Query: 5   PIESVRFFVR----SLVYPAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISV 58
           P+ ++R  +R     L  P  +LVA SGG+DS+ L  A   V     RS G +     +V
Sbjct: 7   PVAAIRRAIRHALIELPDPGPVLVACSGGADSLALAAATAFVAPRLGRSAGLV-----TV 61

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           DH L+E +      V+D      +A   VV    S    G  AAAR+ARY  ++E A  +
Sbjct: 62  DHGLQEGSAQRAAAVADWARATGLAPVEVVRVDVSGRPGGPEAAARQARYRALTEVAGGL 121

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  ++T HT DDQ ETV +   R    +  GL+GM         L + RP L   RE  
Sbjct: 122 GAAALLTGHTRDDQAETVLLALARGAGPR--GLAGMPARRWLGAALLL-RPLLEVSREQT 178

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           R+      +    DP N D  + R RVR  V
Sbjct: 179 RAACTALGLDPWVDPHNADPAYARARVRAEV 209


>gi|225572140|ref|ZP_03781004.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040406|gb|EEG50652.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 18/210 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           I V +SGG DS+ LL AL  +   R F     +  AI+VD    +   D+++    +C +
Sbjct: 26  IAVGISGGKDSLTLLYALAGL---RRFYPNPFELEAITVDMGFGDFHTDKIQ---QLCDK 79

Query: 80  LRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L + ++VV  + SK       ++   +   + R   ++E AK +N   I  AH  DD +E
Sbjct: 80  LEVPYTVVPTEISKIIFQDRKESNPCSLCAKMRKGALNEVAKKLNCNKIAYAHHKDDVVE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +     +  +    S M  T    ++L + RP L     DI  F  + ++   +   
Sbjct: 140 TMLLSLI--FEGRFHTFSPM--TYWDRMDLTLIRPLLYVDEADIIGFKNKYDLPVEKSAC 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
             D   +R   +  +R ++L    +K + F
Sbjct: 196 PADGNTKREYAKDLLRTLNLENPGVKQRMF 225


>gi|325675051|ref|ZP_08154738.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Rhodococcus equi ATCC 33707]
 gi|325554637|gb|EGD24312.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Rhodococcus equi ATCC 33707]
          Length = 244

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G  + GM     YD   W  RP LR RR+  R   
Sbjct: 41  VLLGHTLDDQAETVLLGLAR--GSGGRSIRGMAG---YDAP-W-GRPLLRVRRDVTRRAC 93

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  +   EDP N D  F RVR+R  V
Sbjct: 94  AELGLVAHEDPHNADPAFTRVRLRTEV 120


>gi|323142054|ref|ZP_08076902.1| tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067]
 gi|322413441|gb|EFY04312.1| tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067]
          Length = 328

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 36/213 (16%)

Query: 9   VRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66
           +R  +++L+ P AH L+AVSGG+DS+ L  A  ++ +    G   +S   V+H LR E A
Sbjct: 11  LRKTIKNLLQPEAHYLLAVSGGADSLALAHACAALAAQ---GWGSYSVCHVEHGLRGEEA 67

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH------------- 113
             +++ V   C           W        + AA+  A+  L +E              
Sbjct: 68  LRDMQAVQRACK---------DWGLPCFTEHVQAASYAAQNRLSTEDAARRLRYAALRRI 118

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRC 172
           A+   A  I+TAH   DQ ET+ +R  R    +G+ G+    D I+        RP L  
Sbjct: 119 AEQQGAAAIVTAHHEGDQAETLLLRLLRGAGLQGLAGMRAQQDDII--------RPLLTL 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
            +  +  +     I+ C D +N D  + R RVR
Sbjct: 171 PKSLLEEYCSAEGIAVCYDSTNADTAYTRNRVR 203


>gi|255076007|ref|XP_002501678.1| predicted protein [Micromonas sp. RCC299]
 gi|226516942|gb|ACO62936.1| predicted protein [Micromonas sp. RCC299]
          Length = 780

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 11/167 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + +++SGG DSM L   L +     SFG     A+ +D+  R  +  E  +V   C 
Sbjct: 295 PRSVAISLSGGVDSMVLATILKAAAP--SFGDFDVVAMHIDYANRPESGKEADFVRGWCE 352

Query: 79  RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           R  I   V      K    P+    A +R  RY L  E AKT     +   H   D  E 
Sbjct: 353 RKGIVCVVRRIAEVKRGVTPREQYEAESRAIRYGLYKECAKTHGFPAVFVGHHEGDVQEN 412

Query: 135 VYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSF 180
           +     R      +G++GM +  ++  + +W  RP L   ++ +  F
Sbjct: 413 IIANIFR--GANVLGMNGMNEEGVVEGVRIW--RPMLPHSKDPVLDF 455


>gi|303286641|ref|XP_003062610.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456127|gb|EEH53429.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 758

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 14/188 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S  +PA + +++SGG DSM L + L  +  D S+G     A+ +D+  R  +  E  +V 
Sbjct: 273 SPAWPA-VGISLSGGVDSMALAVILKRLSRDASYGGFDVVAMHIDYDNRPESGVEADFVR 331

Query: 75  DVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             C R+ I   V       +   P+    A +R  RY    + AKT     +   H   D
Sbjct: 332 GWCDRMGIECVVRKIAEVTRGVTPREQYEAESRAIRYGFYKDVAKTHAFPAVFVGHHEGD 391

Query: 131 QLETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             E +    MR     A  GM  +G+ + +     +W  RP L   +  +  F  +  + 
Sbjct: 392 VQENIIANLMRGANLLAVNGMEETGVVEGVA----IW--RPMLPHSKAVVLDFAHKYGVP 445

Query: 188 WCEDPSNT 195
           +  D + T
Sbjct: 446 YFLDSTPT 453


>gi|61217331|sp|Q7UA26|TILS_SYNPX RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 337

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 12/188 (6%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           AVSGG DSM LL+ L  +   +       +    DH     +      +   C +  +  
Sbjct: 38  AVSGGQDSMALLVLLQEL---QRLHHWPLNIWHGDHGWHSGSAVIAADLRSWCQQRDLPI 94

Query: 85  SVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            V    +  PQ  T   A+AR  RY+ + + A+ + A  ++T HT  D+ ET+ ++  R 
Sbjct: 95  QV----DQAPQGSTASEASARHWRYSQLQQRAEELGAD-VVTGHTASDRAETLLLQLARG 149

Query: 143 YAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               G+G       +  D      + RP L   R D  +      +    DPSN    F 
Sbjct: 150 TDLAGLGALRPVRPLFNDSPDGAQLRRPLLGFSRADTAAVCRDLQVPIWHDPSNQSPAFA 209

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 210 RNRIRAEV 217


>gi|303249015|ref|ZP_07335260.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio fructosovorans JJ]
 gi|302489601|gb|EFL49541.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio fructosovorans JJ]
          Length = 330

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           GL  A R ARYA   E             H  DD  E   MR  R     G G  G+   
Sbjct: 99  GLEDAGRLARYAFFEELRGARPNAWTALGHQRDDLAEDQIMRLIR-----GTGWPGLGGM 153

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
              D +  I RP L   R DI +F    ++    DPSN D  + R RVR
Sbjct: 154 AALDPSRRILRPLLMTPRSDIEAFADALSLPVVRDPSNNDPAYRRNRVR 202


>gi|331699846|ref|YP_004336085.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190]
 gi|326954535|gb|AEA28232.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190]
          Length = 328

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G G   +     +D   W +RP L  RR   R+  
Sbjct: 125 VLLGHTLDDQAETVLLGLGR-----GSGPRSIAGMRPWDPP-W-ARPLLGVRRATTRAAC 177

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +   +   DP N D RF RVR+RR V
Sbjct: 178 AELGATAWNDPHNDDPRFTRVRLRREV 204


>gi|197122778|ref|YP_002134729.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. K]
 gi|196172627|gb|ACG73600.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. K]
          Length = 450

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 20/197 (10%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L  PA  +LVA+SGG+DS  LL AL ++    +  +++  A+ +DH LR  ++ E   
Sbjct: 20  RRLFGPADRVLVALSGGADSTALLAALAALRDAGALAEVR--ALYLDHGLRAGSEPEAAS 77

Query: 73  VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
               C+RL +        V   N      + A AR  RYA + E A    AT I T HT 
Sbjct: 78  ARAACARLGVPLEERRLAVGAGN------VQAEARRVRYAALREAAARAGATRIATGHTL 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            DQ ETV +R  R    +G+         +      + RP +   RE+  ++L    + W
Sbjct: 132 GDQAETVLLRLLRGAGARGL-------AAIPPRRGAVIRPLIDRTREEGNAYLRAIGLRW 184

Query: 189 CEDPSNTDDRFERVRVR 205
            +DP+N    + R R+R
Sbjct: 185 ADDPTNAVPGYARNRLR 201


>gi|313678897|ref|YP_004056637.1| tRNA(Ile)-lysidine synthetase [Mycoplasma bovis PG45]
 gi|312950653|gb|ADR25248.1| tRNA(Ile)-lysidine synthetase [Mycoplasma bovis PG45]
          Length = 286

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 87/193 (45%), Gaps = 15/193 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ VSGG DSM LL  L+S   D           +V++ +RE +  +V  V   C    
Sbjct: 2   ILLGVSGGPDSMYLLDLLYSKRKD-------IVVATVNYNVRENSSYDVEVVRKYCQEKE 54

Query: 82  I--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I   H  +  KN+  +      AR  R+    +  +  N   +  AH  DD +E+ +M+ 
Sbjct: 55  IIFEHLEID-KNACFKGNFEQWARNIRFDFFKKLYEKYNCEALYLAHQKDDFIESYFMQK 113

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDR 198
           + +      G+    +  ++ +N  + RP + +  + +I  +L +  I +  D +N    
Sbjct: 114 ESNRKPDFFGIRAQNE--IFGMN--VLRPLVNKVFKSEILDYLHKNKIDYAYDYTNDLTI 169

Query: 199 FERVRVRRFVRDI 211
           + R ++R  ++++
Sbjct: 170 YTRNKIRDRLKNL 182


>gi|238027917|ref|YP_002912148.1| TRNA(Ile)-lysidine synthetase [Burkholderia glumae BGR1]
 gi|237877111|gb|ACR29444.1| TRNA(Ile)-lysidine synthetase [Burkholderia glumae BGR1]
          Length = 479

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 26/220 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVDHCL 62
           +++VR  + +L   A I +A SGG DS        SVL D +      +   A+ V H L
Sbjct: 14  LDAVRGALDALPEAATIAIAYSGGLDS--------SVLLDAAVRVAGAARCVALHVHHGL 65

Query: 63  RETAKDEVRYVSDVCSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
              A   + + +   + L +   A  V   + S    G+ A+ARE RY  +    +   A
Sbjct: 66  SPNADAWLAHAAACAAALGVCFDAQRVEVPRESG--LGVEASARELRYRALDALGERHGA 123

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG---MCDTILYDLNLWIS-RPFLRCRRE 175
             +  A   DDQ ETV ++  R     G GL+G   M    L D    +  RP L   R 
Sbjct: 124 QALWIAQHADDQAETVLLQLLR-----GAGLAGIAAMAPRYLPDGATIVRMRPLLSLLRA 178

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-RFVRDIDLH 214
            +  +   R + W +D SN D R+ R  +R R + ++ +H
Sbjct: 179 QLERYAEARALRWIDDESNADTRYARNALRARVLPELAVH 218


>gi|255530408|ref|YP_003090780.1| tRNA(Ile)-lysidine synthetase [Pedobacter heparinus DSM 2366]
 gi|255343392|gb|ACU02718.1| tRNA(Ile)-lysidine synthetase [Pedobacter heparinus DSM 2366]
          Length = 465

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           IL+AVSGG DS+  L+A    LS  +FG        + HC   LR  E+ +DE  +V  +
Sbjct: 23  ILLAVSGGKDSV--LMAHLFKLSGFNFG--------IAHCNFNLRGAESQRDEA-FVKML 71

Query: 77  CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            + + +   +V +      ++ +     AAR  RY    E         I  A   +D +
Sbjct: 72  AASMDVPFHLVHFHTKAYAARHKVSTQMAARTLRYQWFEEVRLAQGYKAIALAQHQNDAI 131

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +   R     G G++GM   +      W+ RP L     DI + +    + + ED 
Sbjct: 132 ETVLLNLVR-----GTGIAGMHGIL--PKRGWLIRPLLFLSGGDIAALVKSFELDYVEDS 184

Query: 193 SNTDDRFERVRVR 205
           SN    + R ++R
Sbjct: 185 SNKSTDYVRNKLR 197


>gi|167903369|ref|ZP_02490574.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei NCTC
           13177]
          Length = 492

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 19/191 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 82  IAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
                      +    G+ A+AR+ARY  +        A  +  A   DDQ ETV ++  
Sbjct: 85  ACFGAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQLL 144

Query: 141 RDYAEKGMGLSGMCDTI------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           R     G G++G+          L D+     RP L   R  +  +  Q  + W +D SN
Sbjct: 145 R-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDESN 197

Query: 195 TDDRFERVRVR 205
           TD R+ R  +R
Sbjct: 198 TDTRYARNALR 208


>gi|33864611|ref|NP_896170.1| MesJ-like protein [Synechococcus sp. WH 8102]
 gi|33632134|emb|CAE06590.1| possible MesJ homolog [Synechococcus sp. WH 8102]
          Length = 349

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 12/188 (6%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           AVSGG DSM LL+ L  +   +       +    DH     +      +   C +  +  
Sbjct: 50  AVSGGQDSMALLVLLQEL---QRLHHWPLNIWHGDHGWHSGSAVIAADLRSWCQQRDLPI 106

Query: 85  SVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            V    +  PQ  T   A+AR  RY+ + + A+ + A  ++T HT  D+ ET+ ++  R 
Sbjct: 107 QV----DQAPQGSTASEASARHWRYSQLQQRAEELGAD-VVTGHTASDRAETLLLQLARG 161

Query: 143 YAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               G+G       +  D      + RP L   R D  +      +    DPSN    F 
Sbjct: 162 TDLAGLGALRPVRPLFNDSPDGAQLRRPLLGFSRADTAAVCRDLQVPIWHDPSNQSPAFA 221

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 222 RNRIRAEV 229


>gi|332295572|ref|YP_004437495.1| tRNA(Ile)-lysidine synthase [Thermodesulfobium narugense DSM 14796]
 gi|332178675|gb|AEE14364.1| tRNA(Ile)-lysidine synthase [Thermodesulfobium narugense DSM 14796]
          Length = 438

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 15/186 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG+DS+ L   L  + S     K  F  +  DH  R+  KD +   + + +     
Sbjct: 30  IAISGGADSVFLTYILSRLKS-----KDDFILLHFDHGWRK--KDLILERNLIINYAEKY 82

Query: 84  HSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           +  + + +S     L    AR+ R+A        IN+ ++ T H  +D+ ET      R 
Sbjct: 83  NFRIIFGSSGNTGSLNEEDARKRRFAFFCNIMDKINSNVLFTGHNLNDRFETFLWNICR- 141

Query: 143 YAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               G G+ G+     I     + I  P +  +R+ IR+F     + +  D  N D R++
Sbjct: 142 ----GTGIRGILSLKEIRQFGKINIISPLIHLKRDKIRTFCEYLKLDYISDFYNDDIRYK 197

Query: 201 RVRVRR 206
           RV +R+
Sbjct: 198 RVFIRK 203


>gi|61216588|sp|Q7NNL0|TILS_GLOVI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 325

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 8/184 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL  L  +  +R    +      +DH  R  ++ + + V+ +C+   
Sbjct: 30  LLVAVSGGQDSLCLLKLLVDLAPERG---LHLHVGHLDHRWRPGSERDAQRVAVLCNVWG 86

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +   + ++      AAAR  RY  + + A+ +    ++T HT  D+ ETV     R
Sbjct: 87  VPFHL---EIARTPPASEAAARAWRYCWLEQIARGLALERVVTGHTLSDRAETVLFNLLR 143

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+G       +   + L   RP L   R +  ++ L  ++  C D SN +  F R
Sbjct: 144 GSGGAGLGSLDWERPLGGGVRL--VRPLLGITRAETGAYCLAHHLPICIDESNANLTFRR 201

Query: 202 VRVR 205
            R+R
Sbjct: 202 NRIR 205


>gi|291320748|ref|YP_003516013.1| hypothetical protein MAGa8640 [Mycoplasma agalactiae]
 gi|290753084|emb|CBH41060.1| Conserved hypothetical protein [Mycoplasma agalactiae]
          Length = 286

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 95/218 (43%), Gaps = 17/218 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ VSGG DSM LL  + S  SD           +V++ +R  +  +   V   C    
Sbjct: 2   ILLGVSGGPDSMYLLDLISSQRSD-------IVVATVNYNVRHDSAYDAEIVRKFCEDKD 54

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I    +   + ++ +      ARE R++   +  +  N   +  AH  DD LE+ +M+ +
Sbjct: 55  IIFECLEIDQKARFKGNFEKWAREQRFSFFKKIYEKYNCETLYLAHHKDDFLESYFMQKE 114

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                   G+     T  Y   + + RP + +  + +I   L  + I +  D +N    +
Sbjct: 115 SKRQPDFFGIK----TENYIYGMKVVRPLVDKVFKNEILEALHNKKIKYANDYTNDLPIY 170

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            R R+R +++ +       K K F D++ K NN +A+L
Sbjct: 171 TRNRIRIWLKSLSNSQ---KSKIFDDIQ-KENNELAVL 204


>gi|78211629|ref|YP_380408.1| MesJ-like protein [Synechococcus sp. CC9605]
 gi|78196088|gb|ABB33853.1| possible MesJ [Synechococcus sp. CC9605]
          Length = 334

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 110/260 (42%), Gaps = 27/260 (10%)

Query: 10  RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R  ++  + P  + +L+AVSGG DSM LL  L  +     +G    +    DH   + + 
Sbjct: 21  RLLMQPQLLPKGSSLLLAVSGGQDSMALLALLQDLAPLHGWG---LNLWHGDHGWHDNSS 77

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                +S  C + +++  V   + +  +    A AR+ RY  +++      A  ++T HT
Sbjct: 78  RIAAELSSWCKQRQLSLQVD--QAAPGEVPSEAKARQWRYERLAQRGNQAGAD-VVTGHT 134

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCD----TILYDLNLWISRPFLRCRREDIRSFLLQ 183
             D+ ET+ ++  R     G  L+G+        L      + RP L  +R D       
Sbjct: 135 ASDRAETMLLQLAR-----GSDLAGLAALPSVRPLSPEGPRLRRPLLHLQRRDTLQICRD 189

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI--DLHA--------LYLKMKKFQDLRVKVNNA 233
             +   EDPSN    F R R+R+ V  +  +LH         L  ++ + +D + +++  
Sbjct: 190 LALPIWEDPSNQSPEFARNRIRQEVLPVLEELHPGCSQRISDLAERVSQVRDSQTELSQM 249

Query: 234 VAMLIPKYLTVHMRSIIAIS 253
              L+     +  R + A+S
Sbjct: 250 ALELLQTAAGLDRRGLGALS 269


>gi|186685996|ref|YP_001869192.1| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102]
 gi|186468448|gb|ACC84249.1| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102]
          Length = 331

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 8/185 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DS+ L+  L  + S   +          DH  R  ++    +V ++     
Sbjct: 26  LLIAVSGGQDSLCLIKLLLDLKSKWGW---DLGIAHCDHRWRSDSQANANHVENLAETWG 82

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I+  +   + +       AAAR+ RY  +S  A+  N   I+T HT  D+ ET+     R
Sbjct: 83  ISFYL---ETANEPINSEAAARDWRYQALSAIAQANNYQYIVTGHTASDRAETLLYNLIR 139

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  GL  +         + + RP L   R     F  +  +   ED +N D ++ R
Sbjct: 140 GTGAD--GLQALTWQRPLTTGIMLVRPLLEVTRIQTEQFCQEFKLPIWEDSTNQDLQYAR 197

Query: 202 VRVRR 206
            R+R+
Sbjct: 198 NRIRQ 202


>gi|78189702|ref|YP_380040.1| MesJ protein [Chlorobium chlorochromatii CaD3]
 gi|78171901|gb|ABB28997.1| MesJ protein [Chlorobium chlorochromatii CaD3]
          Length = 354

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 27/195 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----------VR 71
           +L+AVSGG DSM LL    +V   + F +   +    +  LR++  D            R
Sbjct: 53  VLLAVSGGPDSMALLSLFCAV---QPFLQCSLALAHCNFQLRDSESDSDEAFVQEQATAR 109

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            +     R    +   +WK S     L  +AR  RYA      +      + T H  +D 
Sbjct: 110 NLPCFVERFETRNVAATWKKS-----LEESARLLRYAFFERLMQVHGFHKVATGHHVNDN 164

Query: 132 LETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ET+     R  +  G+ G+     TI+        RP L   +  I ++L ++ I +  
Sbjct: 165 AETILFNLVRGTSLLGLRGIRAQHGTII--------RPMLLLHKPAITTYLHEQQIPYRV 216

Query: 191 DPSNTDDRFERVRVR 205
           D SN    ++R  +R
Sbjct: 217 DSSNEGTEYDRNFIR 231


>gi|116753888|ref|YP_843006.1| PP-loop domain-containing protein [Methanosaeta thermophila PT]
 gi|116665339|gb|ABK14366.1| PP-loop domain protein [Methanosaeta thermophila PT]
          Length = 326

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + + R F R       + VA+SGG DS  LL  L  + S R    I+  A+ VD  +   
Sbjct: 39  LRTYRIFSRG----GRVAVALSGGKDSSVLLYTLKRIFSHRR--DIELIALMVDEGISGY 92

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHA 114
            +D ++  + +  RL + H  +S++     T    A R+            R  L+++ A
Sbjct: 93  REDTLQNAAALADRLDVPHITLSFREEFGITIDEIAERDLHQAPCTYCGVMRKHLLNKRA 152

Query: 115 KTINATLIMTAHTFDDQLETV---YMRSQRD 142
           + +NA  + T H  DD+ +T+   Y+R   D
Sbjct: 153 RELNAIALATGHNLDDEAQTILLNYLRGDVD 183


>gi|167894984|ref|ZP_02482386.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 7894]
 gi|167919622|ref|ZP_02506713.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei BCC215]
          Length = 492

 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDT------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NT+ R+ R  +R
Sbjct: 197 NTNTRYARNALR 208


>gi|294055282|ref|YP_003548940.1| tRNA(Ile)-lysidine synthetase [Coraliomargarita akajimensis DSM
           45221]
 gi|293614615|gb|ADE54770.1| tRNA(Ile)-lysidine synthetase [Coraliomargarita akajimensis DSM
           45221]
          Length = 483

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 72/190 (37%), Gaps = 15/190 (7%)

Query: 22  ILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           +LVA SGG+DS   +G+L A   +L       ++      +H  R +  DE     +V +
Sbjct: 39  VLVACSGGADSVFLLGILWANAELLG------VELVVAHYNHRWRGSESDEDARFVEVMA 92

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +      +   +  K        AR  R   +   A   N   I   H   D LET   R
Sbjct: 93  KTLGCTYLTETRPEKEAAFTETTARALRLDFLRRAATEANCDCIALGHQQGDILETQLQR 152

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             R    +G+         ++    +    RP L  R  D+R  +    + WCED SN D
Sbjct: 153 IARGSGSEGLA----APRPIHRFERYPPHVRPLLNMRSGDVRMAVAACGLPWCEDSSNDD 208

Query: 197 DRFERVRVRR 206
               R  +RR
Sbjct: 209 LSIPRNALRR 218


>gi|296138291|ref|YP_003645534.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM
           20162]
 gi|296026425|gb|ADG77195.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM
           20162]
          Length = 312

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 13/90 (14%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---SRPFLRCRREDIR 178
           ++  HT DDQ ETV +   R    +   L+GM          W     RP L  RR   R
Sbjct: 118 VLLGHTLDDQAETVLLGLGRGSGARS--LAGMA--------AWAEPYGRPLLGVRRAVTR 167

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
               +  +   +DP NTD R+ RVR+R  V
Sbjct: 168 QACAELGLDPWDDPHNTDARYTRVRLRHEV 197


>gi|302521005|ref|ZP_07273347.1| hypoxanthine phosphoribosyltransferase [Streptomyces sp. SPB78]
 gi|302429900|gb|EFL01716.1| hypoxanthine phosphoribosyltransferase [Streptomyces sp. SPB78]
          Length = 207

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I+  HT DDQ ETV +   R    +   LSGM +  +        RPFLR  R+  
Sbjct: 1   GAAAILLGHTRDDQAETVLLGLARGSGTRS--LSGMAE--ISGPGGRYRRPFLRIDRQTA 56

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR 205
           R   + +++   +DP NTD  + R R+R
Sbjct: 57  RKACMVQSLPVWDDPHNTDPAYTRSRLR 84


>gi|319957784|ref|YP_004169047.1| tRNA(ile)-lysidine synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319420188|gb|ADV47298.1| tRNA(Ile)-lysidine synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 344

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 10/117 (8%)

Query: 95  QTGLMAAAREARY----ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-G 149
           ++   A AR  RY    +LI EH        ++TAH  +D+LE + MR  R      + G
Sbjct: 87  RSNFEAEARRFRYDFFESLIDEHGYEN----LLTAHQLNDRLEWMMMRLIRGAGTVELAG 142

Query: 150 LSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           +  +          + + RP L   + ++  +L  R + W ED SN  D +ER R+R
Sbjct: 143 MEAVAKRFTASGTPYRLIRPLLETPKYELEHYLRSRGVEWFEDSSNASDTYERNRLR 199


>gi|126439105|ref|YP_001059568.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 668]
 gi|126218598|gb|ABN82104.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 668]
          Length = 489

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 21/192 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    L 
Sbjct: 30  IAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQALG 84

Query: 81  -RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R   + V    +  Q G+ A+AR+ARY  +        A  +  A   DDQ ETV ++ 
Sbjct: 85  ARFDAARVDVPRASGQ-GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQL 143

Query: 140 QRDYAEKGMGLSGMCDT------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            R     G G++G+          L D+     RP L   R  +  +  Q  + W +D S
Sbjct: 144 LR-----GAGIAGLAAMAPQYRPALADVVR--MRPLLHLLRAQLERYAQQHALRWIDDES 196

Query: 194 NTDDRFERVRVR 205
           NT+ R+ R  +R
Sbjct: 197 NTNTRYARNALR 208


>gi|182437879|ref|YP_001825598.1| hypothetical protein SGR_4086 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326778515|ref|ZP_08237780.1| tRNA(Ile)-lysidine synthase [Streptomyces cf. griseus XylebKG-1]
 gi|178466395|dbj|BAG20915.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326658848|gb|EGE43694.1| tRNA(Ile)-lysidine synthase [Streptomyces cf. griseus XylebKG-1]
          Length = 370

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 21/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL      R    ++   I+VDH L+  +       ++V +RL 
Sbjct: 71  VLVACSGGADSMALASAL--AFEARKL-DVRAGGITVDHNLQPGSG---LRAAEVVTRLT 124

Query: 82  I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                   A +V   +   P+     A     YA +   A+   A  ++  HT DDQ ET
Sbjct: 125 AMDLDPVEAVAVHVGREGGPEAAARDAR----YAALDAAAERHGAAAVLLGHTRDDQAET 180

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   LSGM             RPFL+  R+ +R   L +++   +DP N
Sbjct: 181 VLLGLARGSGIR--SLSGMA--AASGPAGRYRRPFLQLDRQAVRKACLVQSLPVWDDPHN 236

Query: 195 TDDRFERVRVR 205
            D  + R R+R
Sbjct: 237 IDPAYTRSRLR 247


>gi|78183658|ref|YP_376092.1| MesJ-like protein [Synechococcus sp. CC9902]
 gi|78167952|gb|ABB25049.1| possible MesJ-like [Synechococcus sp. CC9902]
          Length = 337

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 8/189 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVSGG DSM LL  L  ++    +  + +     DH     +      ++  C    
Sbjct: 35  LVVAVSGGQDSMALLGLLRDLMPVHQWRLVLWHG---DHHWHPHSSQIASELNQWCDGQT 91

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   + +     PQT   A AR  RY  +++   T  A  + T HT  D+ ET+ M+  R
Sbjct: 92  LPLQIDTAPEDVPQT--EADARSWRYRCLTQLTHTHRADAV-TGHTASDRAETLLMQMSR 148

Query: 142 DYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G+G       +         + RP L  RR++         +    DP N    F
Sbjct: 149 GSDLAGLGSLRAVRPLQAHAPEGPQLRRPLLGFRRKETAQICSDLQLPIWNDPGNQSPDF 208

Query: 200 ERVRVRRFV 208
            R R+R  V
Sbjct: 209 ARNRIRHEV 217


>gi|295098771|emb|CBK87860.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Eubacterium cylindroides
           T2-87]
          Length = 380

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 17/173 (9%)

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVV--SWKNSKPQTGLMAAAREARYALISEHAK 115
           V++  R+TA  + + V D C    I   V   ++ N   ++   + AR+ RY    E A 
Sbjct: 19  VNYHKRDTANRDEKIVRDYCQERSIEVEVQEPTFDN---KSNFQSWARKVRYDFFFELAT 75

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +   I  AH  DD LET   +  R+      GL    + I+  +   I RP L   + 
Sbjct: 76  KNDTDQIYVAHHLDDHLETYLFQKSRNMLCDHYGLKS--ENIMKGMK--IIRPLLEETKA 131

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            +  +  Q NI +  D SN  + + R ++R        H+   KM   + LR+
Sbjct: 132 QLIEYCDQNNIEYGIDESNLGNDYTRNKIR--------HSQIEKMSLLEKLRL 176


>gi|155122075|gb|ABT13943.1| hypothetical protein MT325_M389R [Paramecium bursaria chlorella
           virus MT325]
          Length = 499

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 27/238 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +++++SGGSDSM     +H +    +FG      + V++  R +A  E  +V+D  +
Sbjct: 194 PTKLIMSISGGSDSMVAFHIIHGL--KEAFG-YDIDVVMVNYTNRNSAYAEEAFVADWVN 250

Query: 79  RLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                  V            +++ +T      R+ RYA      KT+    ++  H  DD
Sbjct: 251 SFGYPLHVRRIDEIKRKQCADNQLRTVYEKYTRDVRYATY----KTLGPHPVVMGHNKDD 306

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LE +         +K   LSGM DT++    +   RP L   + DI ++  +  I +  
Sbjct: 307 CLENILQNIGS--CQKYDNLSGM-DTLVVQDGIPFFRPLLDVSKNDIVAYAREHQIPFL- 362

Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYL----KMKK-FQDLRVKVNNAVAMLIPKY 241
            P++T    +R ++R  V  +  D + L++    ++KK   D+   V  +V M +  +
Sbjct: 363 -PNSTPPTMKRGQIRNKVAPVLNDWNELFVPGLFQLKKTMADMHKVVEKSVEMFVGNF 419


>gi|167720279|ref|ZP_02403515.1| putative cell cycle protein [Burkholderia pseudomallei DM98]
          Length = 392

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 13/115 (11%)

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ A+AR+ARY  +        A  +  A   DDQ ETV ++  R     G G++G+   
Sbjct: 4   GIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQLLR-----GAGIAGLAAM 58

Query: 157 I------LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
                  L D+     RP L   R  +  +  Q  + W +D SNTD R+ R  +R
Sbjct: 59  APQYRPALADVVR--MRPLLHLLRAQLECYAQQHALRWIDDESNTDTRYARNALR 111


>gi|222445889|ref|ZP_03608404.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435454|gb|EEE42619.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii
           DSM 2375]
          Length = 305

 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG DS+  L  L+S    R    I   A++VD  +    ++ V        RL 
Sbjct: 51  VLVALSGGKDSVTTLEILNSF---RKMNVIDICAVTVDEGIDNYRQEGVDIAIRHAKRLG 107

Query: 82  IAHSVVSWKNSKPQT-----------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           I H VVS K     T           G  +     R  +I++ A+ + AT I T H  DD
Sbjct: 108 IEHKVVSLKEEYGITLDEIMQKDNHIGSCSYCGVFRRTIINKAAREMGATKIATGHNLDD 167

Query: 131 QLETVYM 137
           +++ + M
Sbjct: 168 EVQAIMM 174


>gi|226324144|ref|ZP_03799662.1| hypothetical protein COPCOM_01922 [Coprococcus comes ATCC 27758]
 gi|225207693|gb|EEG90047.1| hypothetical protein COPCOM_01922 [Coprococcus comes ATCC 27758]
          Length = 429

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 22/161 (13%)

Query: 58  VDHCLR-ETAKDEVRYVSDVCSR---------LRIAHSVVSWKNSKPQTGLMAAAREARY 107
           ++H +R E AK +  +V  +C +         + I    V ++ S+ + G     R AR 
Sbjct: 1   MNHGIRGEEAKADEEFVKTLCEKKEIPCRSVSVDIPKMAVEYRMSEEEAG-----RTARR 55

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            +  + A+    T I  AH  DD  ET ++           G        +Y +N    R
Sbjct: 56  EIFEQAAEEWGGTRIALAHHQDDNAETFFLHL-------ARGSGLRGLGGIYPVNGMYIR 108

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           P L   R++I  +L  R + +C D +N +D + R R+R  V
Sbjct: 109 PLLCVGRKEIEDYLKGREMPYCIDATNMEDAYMRNRIRNHV 149


>gi|302334896|ref|YP_003800103.1| tRNA(Ile)-lysidine synthetase [Olsenella uli DSM 7084]
 gi|301318736|gb|ADK67223.1| tRNA(Ile)-lysidine synthetase [Olsenella uli DSM 7084]
          Length = 503

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I+TAHT DD+ ET +M + R    +G+       +I    NL I RP L    E++ 
Sbjct: 150 AARILTAHTADDRAETFFMNAIRGTGPQGL------SSIPRRRNL-IVRPLLGRTHEELC 202

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             L    I W ED +N D R+ R  VR  V
Sbjct: 203 DLLRMSGIVWREDKTNADTRYLRSYVRHEV 232


>gi|194335822|ref|YP_002017616.1| tRNA(Ile)-lysidine synthetase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308299|gb|ACF42999.1| tRNA(Ile)-lysidine synthetase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 328

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 31/200 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKD-EVRYVSDVC 77
           +LVAVSGG DSM +L    +V        +  + ++V HC   LR    D +  +V D C
Sbjct: 24  VLVAVSGGPDSMAMLSLFCAVRP------LLRAELAVAHCNFQLRGAESDGDESFVLDHC 77

Query: 78  SRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             L +   V           WK S  ++     AR  RY    +  +    + I T H  
Sbjct: 78  RSLDLECFVDHFDTLRFAGEWKRSVEES-----ARILRYTFFRQVMEQKGFSKIATGHHV 132

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D  ET+     R     G+ L G+    +  LN  I RP L   + D+ ++L ++ I+ 
Sbjct: 133 NDNAETILFNLFR-----GVSLPGL--RGIRALNGKIIRPMLLFHKADMVAYLKEKGITS 185

Query: 189 CEDPSNTDDRFERVRVRRFV 208
             D SN  + ++R  +R  V
Sbjct: 186 RTDTSNYANDYDRNFIRNRV 205


>gi|288559819|ref|YP_003423305.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
 gi|288542529|gb|ADC46413.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
          Length = 305

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 63/150 (42%), Gaps = 21/150 (14%)

Query: 6   IESVRFFVRSLVYPAH-------ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           IES+   VR  +   +       +LVA+SGG DS+  L  L+S    R    I   A+++
Sbjct: 29  IESIEKKVRQTIKRENFIDRGDKVLVALSGGKDSVVTLDILNSY---RERHIIDLCAVTI 85

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARY 107
           D  +    +D V        RL I H VVS+K S           +   G        R 
Sbjct: 86  DEGIAGYREDGVEIAKAHAERLGIPHKVVSFKESFGIDLDEIMAKENHRGSCTYCGVFRR 145

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +I+  A+   AT I T H  DD+ + + M
Sbjct: 146 WIINRAARDFGATKIATGHNLDDETQAILM 175


>gi|116199727|ref|XP_001225675.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51]
 gi|88179298|gb|EAQ86766.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51]
          Length = 312

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 68/160 (42%), Gaps = 21/160 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS------VDHCLRETAKDEVRYVSD 75
           I +A+SGG DSM L      +     + K+   +IS      V+H LRE +  E   V+ 
Sbjct: 43  IALAISGGVDSMALAYLCSKIRQTDQWFKVVDHSISSPCGVIVNHDLREGSAIEADNVAV 102

Query: 76  VCSRLRIAHSVVS--W-----KNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAH 126
              +L +   VV   W     + +KP     +   AR  RY  +    K      + TAH
Sbjct: 103 ATRKLGVKSHVVRIRWDEVLPEGTKPNDVPNIETLARYLRYRRLGTFCKVGQMATLFTAH 162

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTI----LYDLN 162
             DDQ ETV MR    +  +  GL GM   +     YDL+
Sbjct: 163 HEDDQYETVMMRLLSGHGYR--GLQGMRPAVDIPECYDLH 200


>gi|325661579|ref|ZP_08150203.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472106|gb|EGC75320.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 244

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 18/200 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL ALH +   + F   K + SAI+VD    E     +  +  +C+
Sbjct: 25  HIAVGISGGKDSLTLLYALHGL---KRFYPKKFELSAITVDLGYEEF---HLEPIEKLCA 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +L + + +V           + ++   +   + R   +++  K +    +  AH  DD +
Sbjct: 79  QLEVPYKIVRTDIAHILFEERKESNPCSLCAKMRKGALNDAVKDMGCNKVAYAHHKDDII 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   S    T L  ++L + RP +     D+  F  + ++   +  
Sbjct: 139 ETMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPMMFVDEMDVIGFKNKYDLPVVKSK 194

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D   +R   +  VR ++
Sbjct: 195 CPVDGHTKRQYAKELVRQLN 214


>gi|148642613|ref|YP_001273126.1| PP family ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|261349566|ref|ZP_05974983.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
 gi|148551630|gb|ABQ86758.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii ATCC 35061]
 gi|288861524|gb|EFC93822.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
          Length = 305

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 14/127 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG DS+  L  L+S    R    I   A++VD  +    ++ V        RL 
Sbjct: 51  VLVALSGGKDSVTTLEILNSF---RKMNIIDICAVTVDEGIDNYRQEGVDIAIRHAKRLG 107

Query: 82  IAHSVVSWKNSKPQT-----------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           I H VVS K     T           G  +     R  +I++ A+ + AT I T H  DD
Sbjct: 108 IEHKVVSLKEEYGITLDEIMQKDNHIGSCSYCGVFRRTIINKAAREMGATKIATGHNLDD 167

Query: 131 QLETVYM 137
           +++ + M
Sbjct: 168 EVQAIMM 174


>gi|90994574|ref|YP_537064.1| hypothetical protein 327 [Porphyra yezoensis]
 gi|122194644|sp|Q1XDA4|TILS_PORYE RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|90819138|dbj|BAE92507.1| unnamed protein product [Porphyra yezoensis]
          Length = 329

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 12/205 (5%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+S IE        L Y + +LV+ SGG DS+ L+  L+     ++    K S I  DH 
Sbjct: 11  FISTIEKNNL----LPYNSSLLVSFSGGQDSLALVKILYDF---KNIYNWKISLIHFDHR 63

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R    D +     V    ++ +  V +            +R+ RY  +   A   N   
Sbjct: 64  WRS---DSMLVSKQVIKYAKMCNLSVYYFECPKYLNTEETSRKWRYLTLINTAYVNNFNT 120

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+ AHT  D+ ET+     R  +  G+        +   ++L   RP L C R +   F 
Sbjct: 121 IVLAHTATDKAETMLSNLFRGTSLDGLSSIHWSSQLSNAVHL--VRPLLNCYRSETSWFC 178

Query: 182 LQRNISWCEDPSNTDDRFERVRVRR 206
            +  +    D SN ++   R R+R+
Sbjct: 179 RKYFLPVWIDQSNYNNSLSRNRLRQ 203


>gi|134296080|ref|YP_001119815.1| tRNA(Ile)-lysidine synthetase [Burkholderia vietnamiensis G4]
 gi|134139237|gb|ABO54980.1| tRNA(Ile)-lysidine synthetase [Burkholderia vietnamiensis G4]
          Length = 468

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 96/227 (42%), Gaps = 23/227 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A   V         +  A+ V H L   
Sbjct: 14  LDAVGAALSGLPADARIAIAYSGGLDSTVLLDAAVRVAG-----AARCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLI 122
           A   V Y      RL +  +  S +   P+    G+ A ARE RYA +    +      +
Sbjct: 69  ADAWVAYAQATAERLGV--TFESERVDVPRDSGLGIEATARERRYAALDAMCERHGVAAL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
             A   DDQ ETV ++  R     G G++G+            ++   RP LR  R  + 
Sbjct: 127 WIAQHADDQAETVLLQLLR-----GAGIAGLAAMAPRYRPDGASVERVRPLLRLLRAQLE 181

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +  QR ++W +D SN D R+ R  +R  V    L AL +    F+D
Sbjct: 182 RYAAQRELAWIDDESNADTRYARNALRLDV----LPALAVHFPGFRD 224


>gi|16330873|ref|NP_441601.1| hypothetical protein slr1278 [Synechocystis sp. PCC 6803]
 gi|6136631|sp|P74192|TILS_SYNY3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1653367|dbj|BAA18281.1| slr1278 [Synechocystis sp. PCC 6803]
          Length = 330

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 17/191 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVAVSGG DS+ LL  L+ +     +       ++V HC      D    ++D    L 
Sbjct: 26  ILVAVSGGQDSLCLLHLLNDLTKQWQW------HLAVAHCDHRWPTDAG--IADHVQGLA 77

Query: 82  IAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             + +  ++      PQT   AAAR  RY  ++  AK  N  ++MT HT  D+ ET+   
Sbjct: 78  QGYKLPYFQRDAQDLPQT--EAAARHWRYHALTAIAKAENFPVVMTGHTQSDRAETLLFN 135

Query: 139 SQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     G+        +    +    + + RP L   R++   F  Q+ +S  ED  N
Sbjct: 136 LVRGSGSDGLQAMNWVRNLEESGSDKSPIRLIRPLLEISRQETGDFCQQQQLSVWEDVLN 195

Query: 195 TDDRFERVRVR 205
               + R R+R
Sbjct: 196 EKLTYRRNRIR 206


>gi|237802640|ref|YP_002887834.1| hypothetical protein JALI_2111 [Chlamydia trachomatis B/Jali20/OT]
 gi|231273874|emb|CAX10665.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT]
          Length = 254

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 12/165 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL+ L ++ S R F ++   AI +       A     Y+S +C +++
Sbjct: 37  IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 95

Query: 82  IAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +   S+ S ++   P+          R  L+ + AK + AT +   H  DD ++T  M  
Sbjct: 96  VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 152

Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQ 183
               AE     +GM   + + +  + I RP +    + IR F ++
Sbjct: 153 LHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEDLIRKFAME 192


>gi|20090822|ref|NP_616897.1| hypothetical protein MA1974 [Methanosarcina acetivorans C2A]
 gi|19915889|gb|AAM05377.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 302

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 13/136 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS   L  +H +L +R    I+  A+S+D  +       +     +   L 
Sbjct: 52  IAVALSGGKDSSVALYVMHKILGNRP--DIQIVAVSIDEGIHGYRPHSLELAKKLTETLG 109

Query: 82  IAHSVVSWKNSKPQT--GLMAAAREA---------RYALISEHAKTINATLIMTAHTFDD 130
           + H + S+K+    T   L A  RE          R ++++  A  I AT ++T H  DD
Sbjct: 110 VRHIIKSFKDEHGVTMDELAAMDREKGTCSYCGVLRKSILNRVALEIGATKLVTGHNLDD 169

Query: 131 QLETVYMRSQRDYAEK 146
           + +T+ +   R   E+
Sbjct: 170 EAQTILLNHFRGDMER 185


>gi|172041383|ref|YP_001801097.1| cell cycle protein MesJ [Corynebacterium urealyticum DSM 7109]
 gi|171852687|emb|CAQ05663.1| cell cycle protein MesJ [Corynebacterium urealyticum DSM 7109]
          Length = 494

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 76/203 (37%), Gaps = 22/203 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + + VSGG+DS+ L     + ++ +      F A+ VDH L+E + +     +  C  + 
Sbjct: 107 VYLGVSGGADSLALAYTA-AGIAKKDLPGASFRALVVDHQLQEGSAEVAATAAQNCEEIG 165

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V++        G  A    AR A             ++ AHT  D  E + +   R
Sbjct: 166 IPAQVLTIDVPG---GPGADEAAAREARYRALGAAAAGRPLLVAHTASDDAEGLLLGLAR 222

Query: 142 DYA------------------EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
                                + G   +G     +     W+ RP L   RED  +   +
Sbjct: 223 GSGTGALAGLRPITTATHQRSDNGEQQAGNEHPAIAAGAGWLGRPLLDSTREDTEATCHR 282

Query: 184 RNISWCEDPSNTDDRFERVRVRR 206
             +S+  DP N   RF R RVR+
Sbjct: 283 AGLSFWSDPHNASPRFRRSRVRQ 305


>gi|239942229|ref|ZP_04694166.1| hypothetical protein SrosN15_14620 [Streptomyces roseosporus NRRL
           15998]
 gi|239988695|ref|ZP_04709359.1| hypothetical protein SrosN1_15407 [Streptomyces roseosporus NRRL
           11379]
          Length = 370

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 21/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL      R    ++   I+VDH L+  +       ++V +RL 
Sbjct: 71  VLVACSGGADSMALASAL--AFEARKL-DVRAGGITVDHNLQPGSG---LRAAEVVTRLT 124

Query: 82  I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                   A +V   +   P+     A     YA +   A+   A  ++  HT DDQ ET
Sbjct: 125 AMDLDPVEAVAVHVGREGGPEAAARDAR----YAALDAAAERHGAAAVLLGHTRDDQAET 180

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   LSGM             RPFL+  R+  R   L ++I   +DP N
Sbjct: 181 VLLGLARGSGIR--SLSGMA--AASGPAGRYRRPFLQLDRQTARKACLVQSIPVWDDPHN 236

Query: 195 TDDRFERVRVR 205
            D  + R R+R
Sbjct: 237 IDPAYTRSRLR 247


>gi|81299947|ref|YP_400155.1| hypothetical protein Synpcc7942_1138 [Synechococcus elongatus PCC
           7942]
 gi|81168828|gb|ABB57168.1| conserved hypothetical protein YCF62 [Synechococcus elongatus PCC
           7942]
          Length = 336

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 8/184 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DS+ L+  L  +   +       +    DH  R  +     ++  +  + +
Sbjct: 40  LLLAVSGGQDSLALVQLLRGL---QPHWHWSLAIAHCDHGWRSDSTANAEHLRQLADQWQ 96

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +       ++ +P     AAAR  RY ++   A  I+A L++T HT  D+ ET+     R
Sbjct: 97  LPFYCQ--RSPEPPRS-EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETLLYNLTR 153

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+  S      L D  L + RPFL   R +    + Q  +   ED +N D RF R
Sbjct: 154 GSHLQGLA-SLRWQRSLSD-RLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNRDRRFAR 211

Query: 202 VRVR 205
            R+R
Sbjct: 212 NRLR 215


>gi|295114733|emb|CBL35580.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [butyrate-producing
           bacterium SM4/1]
          Length = 482

 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 30/202 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
           ++V +SGG+DS+ LL    S+LSD RS   I+  A+ V H LR + A  +  +  ++C +
Sbjct: 39  VVVGLSGGADSVCLL----SLLSDMRSSLSIRLRAVHVHHGLRGQEADRDADFSRELCRK 94

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA-------------KTINATL---IM 123
           L I   ++  +N+  +      + E    L+   A             +   A L   I 
Sbjct: 95  LDIPF-ILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWEEEEREQEGAALPVRIA 153

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  DD  ET+       +  +G GL G+    +  +   + RP L   R++I  +L +
Sbjct: 154 VAHHGDDSAETILY-----HLFRGSGLRGLAG--IAPVRGRVIRPLLCVSRQEILEYLRE 206

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
             +S+  D +N  + + R R+R
Sbjct: 207 EGLSYVTDSTNLLNDYTRNRLR 228


>gi|331270424|ref|YP_004396916.1| hypothetical protein CbC4_2254 [Clostridium botulinum BKT015925]
 gi|329126974|gb|AEB76919.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
          Length = 239

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 15/177 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS+ LL  L++    + F    F+ I++   L   A  +   +  +C  L 
Sbjct: 24  IAVGLSGGKDSITLLYLLNAY---KRFSPEPFNLIAI--TLDPGAGADFSEMIHICKELN 78

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + + +   +      + + ++   +     R   +++HAK +    I   H  +D +ET+
Sbjct: 79  VPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKIALGHHKNDAIETL 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            M        +G   + + DT L   +L I RP +    ++I++F+   NI   E+P
Sbjct: 139 LM----SMFYEGRINTFLPDTYLSRADLHIIRPMVYIDEQNIKTFIKNSNIPIVENP 191


>gi|71909752|ref|YP_287339.1| PP-loop [Dechloromonas aromatica RCB]
 gi|123626220|sp|Q477W2|TTCA_DECAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|71849373|gb|AAZ48869.1| PP-loop [Dechloromonas aromatica RCB]
          Length = 287

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 24/229 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           +LV VSGG DS  LL A+   L  R+  K +  A+++D        D + RY   +    
Sbjct: 34  VLVCVSGGKDSYTLL-AMLMALQQRAPVKFRLIAMNLDQKQPGFPADILPRYFESIGIEY 92

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           RI     +SVV  K  + +T     +R  R  +I   AK + A  I   H  DD + T++
Sbjct: 93  RIVEADTYSVVKEKIPEGKTTCSLCSR-LRRGIIYRTAKELGANKIALGHHRDDMVHTLF 151

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           +        K M    + D    D +  + RP   C   DI  F   R + +   P N  
Sbjct: 152 LNLLFGGKLKAMPPKLVTD----DKSHVVIRPLAYCAEADIAKF--ARGMEFPIIPCNLC 205

Query: 195 -TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            + D  +R ++R  +++ D        K++      V  A+  ++P +L
Sbjct: 206 GSQDNLQRQKIREMMQEWD--------KRYPGRTESVFTAMQNVVPSHL 246


>gi|317178518|dbj|BAJ56306.1| hypothetical protein HPF30_0209 [Helicobacter pylori F30]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H +V  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIVYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|291445684|ref|ZP_06585074.1| tRNA(Ile)-lysidine synthase [Streptomyces roseosporus NRRL 15998]
 gi|291348631|gb|EFE75535.1| tRNA(Ile)-lysidine synthase [Streptomyces roseosporus NRRL 15998]
          Length = 391

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 21/191 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL      R    ++   I+VDH L+  +       ++V +RL 
Sbjct: 92  VLVACSGGADSMALASAL--AFEARKL-DVRAGGITVDHNLQPGSG---LRAAEVVTRLT 145

Query: 82  I-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                   A +V   +   P+     A     YA +   A+   A  ++  HT DDQ ET
Sbjct: 146 AMDLDPVEAVAVHVGREGGPEAAARDAR----YAALDAAAERHGAAAVLLGHTRDDQAET 201

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   LSGM             RPFL+  R+  R   L ++I   +DP N
Sbjct: 202 VLLGLARGSGIR--SLSGMA--AASGPAGRYRRPFLQLDRQTARKACLVQSIPVWDDPHN 257

Query: 195 TDDRFERVRVR 205
            D  + R R+R
Sbjct: 258 IDPAYTRSRLR 268


>gi|331084861|ref|ZP_08333949.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410955|gb|EGG90377.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 244

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 18/200 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL ALH +   + F   K + SAI+VD    E     +  +  +C+
Sbjct: 25  HIAVGISGGKDSLTLLYALHGL---KRFYPKKFELSAITVDLGYEEF---HLEPIEKLCA 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +L + + +V           + ++   +   + R   +++  K +    +  AH  DD +
Sbjct: 79  QLEVPYKIVRTDIAHILFEERKESNPCSLCAKMRKGALNDAVKDMGCNKVAYAHHKDDII 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   S    T L  ++L + RP +     D+  F  + ++   +  
Sbjct: 139 ETMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPMMFVDEMDVIGFKNKYDLPVVKSK 194

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D   +R   +  VR ++
Sbjct: 195 CPVDGHTKRQYAKELVRQLN 214


>gi|317182435|dbj|BAJ60219.1| hypothetical protein HPF57_1145 [Helicobacter pylori F57]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|154483514|ref|ZP_02025962.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC
           27560]
 gi|149735424|gb|EDM51310.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC
           27560]
          Length = 234

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 14/197 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS+ LL AL+ +   + F   KF  +++   L    +D  + +   C+ + 
Sbjct: 26  IAVGISGGKDSLTLLYALNGL---KRFYPKKFDVVAITVDLDFGIQDFSK-IEKYCNDMD 81

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           I + VV  +      N + ++   +   + R   +++ AK+I    I  AH  DD +ET+
Sbjct: 82  IEYYVVKTEIANVVFNERQESNPCSLCAKMRKGALNDFAKSIGCNKIAYAHHKDDMIETM 141

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++     Y  +    S +  T L  + L + RP +     D+  F  +  +   +     
Sbjct: 142 FLSLI--YEGRFHCFSPV--TYLDKMELTVIRPLMYVPEADVIGFTNKYELPVAKSKCPV 197

Query: 196 DDRFERVRVRRFVRDID 212
           D   +R  V+  V+ ++
Sbjct: 198 DGHTKREYVKNIVKQLN 214


>gi|332673982|gb|AEE70799.1| PP-loop family protein [Helicobacter pylori 83]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H +V  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIVYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|208435075|ref|YP_002266741.1| hypothetical protein HPG27_1125 [Helicobacter pylori G27]
 gi|254779731|ref|YP_003057837.1| putative PP-loop family ATPase [Helicobacter pylori B38]
 gi|208433004|gb|ACI27875.1| hypothetical protein HPG27_1125 [Helicobacter pylori G27]
 gi|254001643|emb|CAX29794.1| Putative PP-loop family ATPase [Helicobacter pylori B38]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242


>gi|15645796|ref|NP_207973.1| hypothetical protein HP1182 [Helicobacter pylori 26695]
 gi|108563546|ref|YP_627862.1| hypothetical protein HPAG1_1121 [Helicobacter pylori HPAG1]
 gi|217033027|ref|ZP_03438497.1| hypothetical protein HPB128_4g7 [Helicobacter pylori B128]
 gi|298735806|ref|YP_003728331.1| hypothetical protein HPB8_310 [Helicobacter pylori B8]
 gi|2314342|gb|AAD08228.1| conserved hypothetical protein [Helicobacter pylori 26695]
 gi|107837319|gb|ABF85188.1| hypothetical protein HPAG1_1121 [Helicobacter pylori HPAG1]
 gi|216945254|gb|EEC23934.1| hypothetical protein HPB128_4g7 [Helicobacter pylori B128]
 gi|298354995|emb|CBI65867.1| conserved hypothetical protein [Helicobacter pylori B8]
 gi|317009796|gb|ADU80376.1| hypothetical protein HPIN_05900 [Helicobacter pylori India7]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242


>gi|210135340|ref|YP_002301779.1| PP-loop family protein [Helicobacter pylori P12]
 gi|210133308|gb|ACJ08299.1| PP-loop family protein [Helicobacter pylori P12]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242


>gi|18313243|ref|NP_559910.1| hypothetical protein PAE2295 [Pyrobaculum aerophilum str. IM2]
 gi|18160762|gb|AAL64092.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 324

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 27/152 (17%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---- 60
           +E++R     L+ P  ++ +AVSGG DS+ LL  L  +    + G +K  A +++     
Sbjct: 37  VETIR--SEKLIVPGDYVAIAVSGGKDSLVLLYILGRLKERGTLGGVKMEAFTINEGHPY 94

Query: 61  -CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            C    ++ +  YV D+ S+  I ++V  +K+    T +  + R A+ A    H  TI+ 
Sbjct: 95  SCFYRMSRRD--YVRDLASKFGIEYNVYHFKDIFGVTAMELSERLAK-AGHEVHMCTIDG 151

Query: 120 TL----------------IMTAHTFDDQLETV 135
            L                I TAH  DD+ +TV
Sbjct: 152 VLRRRAMNIIGKARGWTKIATAHNLDDEAQTV 183


>gi|218883803|ref|YP_002428185.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765419|gb|ACL10818.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus
           kamchatkensis 1221n]
          Length = 339

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 17/139 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L    HI+VAVSGG DS+ LL  LH +   R     + +A+ VD  ++   +  V  +
Sbjct: 43  RMLGKNEHIIVAVSGGKDSIALLHVLHKL--SRKMPGWRVTAVLVDEGIKGYREKTVENL 100

Query: 74  SDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYA-----------LISEHAKTIN 118
               ++ ++ + +VS+K     S  +      AR   Y            ++++ A+ + 
Sbjct: 101 VAYAAKNKVDYHIVSFKEYIGASLDEIVEKGRARGLPYLPCSYCGVFRRYVLNKAARRLG 160

Query: 119 ATLIMTAHTFDDQLETVYM 137
            T+I TAH  DD ++T  M
Sbjct: 161 GTVIATAHNLDDVIQTFLM 179


>gi|317012963|gb|ADU83571.1| hypothetical protein HPLT_05905 [Helicobacter pylori Lithuania75]
          Length = 253

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPASDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242


>gi|268610850|ref|ZP_06144577.1| PP-loop domain-containing protein [Ruminococcus flavefaciens FD-1]
          Length = 248

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 87/215 (40%), Gaps = 18/215 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79
           I V VSGG DSM +L  L  +   R F  I +  + +++D C     K +   +SD C+ 
Sbjct: 24  ICVGVSGGKDSMVMLYGLALL---RRFIGINYDIAGLTLDPCF-GGVKGDYSAISDFCAE 79

Query: 80  LRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             I + VV  +         K        AR  R AL +E  K +    I   H +DD +
Sbjct: 80  HDIEYHVVETQIGEIVFDVRKEPNPCSLCARMRRGALHNE-TKKLGCNKIALGHNYDDAV 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  M     + E  +G     +  L    + + RP +    + IRS  L+  +   +  
Sbjct: 139 ETFIMNL---FTEGRIGCFAPTN-YLSRKEITLIRPLVFAPEKAIRSAALRNQLPIVKSV 194

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              D    R R + F+ +++      K + F  +R
Sbjct: 195 CPADGHTNRQRTKEFLEEMERKDKGFKDRIFGAMR 229


>gi|307637856|gb|ADN80306.1| tRNA-Cytosine32--2-thiocytidine synthetase [Helicobacter pylori
           908]
 gi|317011386|gb|ADU85133.1| hypothetical protein HPSA_05805 [Helicobacter pylori SouthAfrica7]
 gi|325996453|gb|ADZ51858.1| tRNA Cytosine 32-2-thiocytidine synthetase [Helicobacter pylori
           2018]
 gi|325998042|gb|ADZ50250.1| tRNA Cytosine 32-2-thiocytidine synthetase [Helicobacter pylori
           2017]
          Length = 253

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F K  F A++V + L E     ++++SD+C    
Sbjct: 29  ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|93005006|ref|YP_579443.1| tRNA(Ile)-lysidine synthetase-like [Psychrobacter cryohalolentis
           K5]
 gi|92392684|gb|ABE73959.1| tRNA(Ile)-lysidine synthetase-like [Psychrobacter cryohalolentis
           K5]
          Length = 535

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 21/195 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79
           I +A SGG DS+ L  AL   L  +  G++ F    + V+H L+  +     +V++    
Sbjct: 43  IWLACSGGRDSLAL-AALCVQLYQQ--GRLPFLPQLLHVNHGLQADSAIWAAHVANWAKA 99

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +I  +++    +        AAR+ARY ++   A+     +++ AH  DDQ ETV MR 
Sbjct: 100 QKIPCTIL---QAHVNGHDEQAARQARYDVM--RAQLNQDDVLLLAHHADDQAETVLMR- 153

Query: 140 QRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
                 +G G++G+     + +       + + RP+L  +R  I S+  +  + + +DP+
Sbjct: 154 ----LIQGAGVNGLSGMHPWRVQTQDAHRIIVWRPWLIVQRASISSYAKRLKLPYIDDPT 209

Query: 194 NTDDRFERVRVRRFV 208
           N      R  +RR +
Sbjct: 210 NDGGDNVRSGLRRDI 224


>gi|284098925|ref|ZP_06385979.1| tRNA(Ile)-lysidine synthetase [Candidatus Poribacteria sp. WGA-A3]
 gi|283830413|gb|EFC34619.1| tRNA(Ile)-lysidine synthetase [Candidatus Poribacteria sp. WGA-A3]
          Length = 158

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   HT DDQ ETV +   R     G GL+G+   +       + RPFL+  R +I
Sbjct: 12  GAAKVAVGHTQDDQAETVLLSMMR-----GSGLAGLSG-MPARREPCVIRPFLQVSRSEI 65

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             +L +R+  +  D SN + ++ R R+RR V
Sbjct: 66  LQYLDERHCGFRVDSSNENPKYARNRLRREV 96


>gi|158334883|ref|YP_001516055.1| tRNA(Ile)-lysidine synthase [Acaryochloris marina MBIC11017]
 gi|158305124|gb|ABW26741.1| tRNA(Ile)-lysidine synthase [Acaryochloris marina MBIC11017]
          Length = 338

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 8/184 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A+SGG DS  LL  L  +     +   + +    DH     +     +V+ +  + +
Sbjct: 30  ILIALSGGQDSFCLLQLLVDLQPKWGW---QLAIAHGDHRWPLDSDANAHHVTQIARQYQ 86

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + + +   + +  +    AA R+ RY +++E A+     L+++AHT  D+ ET+     R
Sbjct: 87  LPYFL---RQATTELRSEAAGRQWRYQILTEIAEQEAYPLVVSAHTASDRAETLLYNLIR 143

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+        +   + L   RP L   R     F   RN+   +D  N +  + R
Sbjct: 144 GSGTDGLQALSWQRPLSDRVQL--VRPLLDVARAQTGDFCRHRNLPIWQDAMNQNLVYRR 201

Query: 202 VRVR 205
            R+R
Sbjct: 202 NRIR 205


>gi|317014572|gb|ADU82008.1| hypothetical protein HPGAM_06125 [Helicobacter pylori Gambia94/24]
          Length = 253

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F K  F A++V + L E     ++++SD+C    
Sbjct: 29  ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|308183288|ref|YP_003927415.1| hypothetical protein HPPC_05775 [Helicobacter pylori PeCan4]
 gi|308065473|gb|ADO07365.1| hypothetical protein HPPC_05775 [Helicobacter pylori PeCan4]
          Length = 253

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQS 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|61217183|sp|Q5N517|TILS_SYNP6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 325

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 8/184 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DS+ L+  L  +   +       +    DH  R  +     ++  +  + +
Sbjct: 29  LLLAVSGGQDSLALVQLLRGL---QPHWHWSLAIAHCDHGWRSDSTANAEHLRQLADQWQ 85

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +       ++ +P     AAAR  RY ++   A  I+A L++T HT  D+ ET+     R
Sbjct: 86  LPFYCQ--RSPEPPRS-EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETLLYNLTR 142

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+  S      L D  L + RPFL   R +    + Q  +   ED +N D RF R
Sbjct: 143 GSHLQGLA-SLRWQRSLSD-RLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNRDRRFAR 200

Query: 202 VRVR 205
            R+R
Sbjct: 201 NRLR 204


>gi|311107714|ref|YP_003980567.1| tRNA(Ile)-lysidine synthetase [Achromobacter xylosoxidans A8]
 gi|310762403|gb|ADP17852.1| tRNA(Ile)-lysidine synthetase [Achromobacter xylosoxidans A8]
          Length = 354

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 11/195 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I VA+SGG+DS   ++A+H+    R  G ++     V H L++ A    ++V  +  
Sbjct: 42  PPRIAVALSGGADSA--MLAVHAAALVRELG-MELMLFHVHHGLQDAADAWTQHVRTLAD 98

Query: 79  RLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            L +  SV   + ++    G+ AAAR+ARYA +++ A+    T I+ AH  +DQ ETV +
Sbjct: 99  LLALPLSVARVEVAQAAGKGIEAAARDARYAALAQLAREQGVTHILLAHHRNDQAETVLL 158

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI--RSFLLQRNISW--CEDPS 193
           R  R     GM  + M      D  L++ RP+L   R+ I   +  +     W   +DP+
Sbjct: 159 RLLRGTGLAGM--AAMAPVSRRDGLLYL-RPWLEVDRDAILHAADAVAAATGWRPVQDPT 215

Query: 194 NTDDRFERVRVRRFV 208
           N D  + R  +R  +
Sbjct: 216 NADPHYTRAALRELL 230


>gi|118619374|ref|YP_907706.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99]
 gi|118571484|gb|ABL06235.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 84/192 (43%), Gaps = 29/192 (15%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------ETAKDEVRYVSDV 76
           + +SGG DS+ L  A+ + L          +A+ VDH L+       ETA+ +   VS  
Sbjct: 30  IGLSGGPDSLAL-TAVAARLR-------PTTALIVDHGLQPDSAAVSETARAQA--VSLG 79

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C   R+    V    +    GL AAAR ARY  +  H        ++ AHT DDQ ETV 
Sbjct: 80  CVTARVLRVQVG-NPAGAGGGLEAAARTARYGALDAHRDGP----VLLAHTLDDQAETVL 134

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G   +     +D   W  RP L  RR        +  ++  +DP N+D
Sbjct: 135 LGLGR-----GSGARSIAGMRPHDPP-WC-RPLLGVRRGVTHDACRELGLTAWQDPHNSD 187

Query: 197 DRFERVRVRRFV 208
            RF R R+R  V
Sbjct: 188 RRFTRTRLRAEV 199


>gi|291563476|emb|CBL42292.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [butyrate-producing bacterium SS3/4]
          Length = 261

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 84/211 (39%), Gaps = 16/211 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           HI V VSGG DS+ LL ALH +   R + K     A +VD         +   +   C  
Sbjct: 25  HIAVGVSGGKDSLALLYALHEL--QRFYPKHFTLHAFTVDLGF---GIQDFSGIKAFCDG 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++  +++  +       ++ ++   A   + R   ++  AK      I  AH  DD +E
Sbjct: 80  FQVPLTIIPTEIGKIVFETRKESNPCALCAKMRKGALNLEAKAAGCNKIAYAHHKDDIIE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +    +    G   +    T L    L + RP +     D+  F  + N+  C++P 
Sbjct: 140 TMLLSLMFE----GRFYTFPPKTFLDRTELTVIRPLMYVSEADVIGFKNKYNLPVCKNPC 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
             D   +R  V+     ++     +K + F 
Sbjct: 196 PADGHTKREYVKNLTSQLNKENPGIKERLFH 226


>gi|183985093|ref|YP_001853384.1| cell cycle protein MesJ [Mycobacterium marinum M]
 gi|183178419|gb|ACC43529.1| cell cycle protein MesJ [Mycobacterium marinum M]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 84/192 (43%), Gaps = 29/192 (15%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------ETAKDEVRYVSDV 76
           + +SGG DS+ L  A+ + L          +A+ VDH L+       ETA+   + VS  
Sbjct: 30  IGLSGGPDSLAL-TAVAARLR-------PTTALIVDHGLQPDSAAVSETAR--AQAVSLG 79

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C   R+    V    +    GL AAAR ARY  +  H        ++ AHT DDQ ETV 
Sbjct: 80  CVAARVLRVQVG-NPAGAGGGLEAAARTARYGALDAHRDGP----VLLAHTLDDQAETVL 134

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G   +     +D   W  RP L  RR        +  ++  +DP N+D
Sbjct: 135 LGLGR-----GSGARSIAGMRPHDPP-WC-RPLLGVRRGVTHDACRELGLTAWQDPHNSD 187

Query: 197 DRFERVRVRRFV 208
            RF R R+R  V
Sbjct: 188 RRFTRTRLRAEV 199


>gi|300114179|ref|YP_003760754.1| PP-loop domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299540116|gb|ADJ28433.1| PP-loop domain protein [Nitrosococcus watsonii C-113]
          Length = 294

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 15/171 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  LL  L   LS +    IKF  I+V+   ++    E    RY+  +  
Sbjct: 41  LMVCLSGGKDSYALLDIL---LSLQQHAPIKFDLIAVNLDQKQPGFPEHVLPRYLESLGV 97

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             RI     +SVV     + +T     +R  R  ++   A+ + AT I   H  DD LET
Sbjct: 98  PYRIVEQDTYSVVKRVIPEGKTTCSLCSR-LRRGILYGTAEALGATKIALGHHRDDILET 156

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            ++        KGM    + D    D    + RP   CR +D+ S+   +N
Sbjct: 157 FFLNMFHGGTLKGMPPKLLSD----DGKHMVIRPLAYCREKDLASYAQLKN 203


>gi|217034263|ref|ZP_03439681.1| hypothetical protein HP9810_2g42 [Helicobacter pylori 98-10]
 gi|216943323|gb|EEC22785.1| hypothetical protein HP9810_2g42 [Helicobacter pylori 98-10]
 gi|261838507|gb|ACX98273.1| hypothetical protein KHP_1079 [Helicobacter pylori 51]
 gi|261839907|gb|ACX99672.1| hypothetical protein HPKB_1114 [Helicobacter pylori 52]
 gi|297380364|gb|ADI35251.1| Hypothetical protein HPV225_1210 [Helicobacter pylori v225d]
          Length = 253

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|317150446|ref|XP_001824029.2| hypothetical protein AOR_1_526094 [Aspergillus oryzae RIB40]
          Length = 1612

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 79/221 (35%), Gaps = 45/221 (20%)

Query: 18   YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            +P  + +AVSGG+DSM L   L           I  +A  VDH  RE +  E   VS   
Sbjct: 1033 FPRRLGLAVSGGADSMALAY-LSKQWEKSRPNDISVTAFVVDHKAREESTREANTVSQWL 1091

Query: 78   SRLRIAHSV--VSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              + +   +  ++W  S       T     AR  R+  + +  +      ++  H  DD 
Sbjct: 1092 QDIGVKSEILELTWPESTKSPSKVTAFETHARRLRFQALGKACRDRQIEALLMGHHQDDT 1151

Query: 132  LETVYMRSQRDYAEKGMGLSGM--------C----------------------------D 155
            +ET   R       KG GL+G+        C                            D
Sbjct: 1152 VETTLWRLC--TGAKGAGLAGIPEVTRIPECHGIYGVSESGSSYTIPSRPQRSSAQARND 1209

Query: 156  TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            T +    + I RP L   +  + +   + NI +  DP+N D
Sbjct: 1210 TTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSDPTNFD 1250


>gi|220932926|ref|YP_002509834.1| PP-loop domain protein [Halothermothrix orenii H 168]
 gi|219994236|gb|ACL70839.1| PP-loop domain protein [Halothermothrix orenii H 168]
          Length = 260

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 19/200 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +ILV +SGG DS  LL  L ++++  +    + +A++VD    +  K+   Y+ + C RL
Sbjct: 28  NILVGLSGGKDSSFLLYVL-ALINRYASLDFRLAALTVDLGF-DGGKNYFDYLKNYCDRL 85

Query: 81  ---------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                     IA  ++S K  KP     A     R   I +  K      I   H +DD 
Sbjct: 86  GVKYYVLETEIASYILSEKTEKP----CARCAHFRKGAIVDFMKENGFNKIAYGHHYDDA 141

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET  M     YA  G   + +  T L    +++ RP +  R  +I       + +  E 
Sbjct: 142 VETFLMSIL--YA--GQVKTFLPKTYLSRNEVYVIRPLVYLRESEIIRARKYMDYNPPES 197

Query: 192 PSNTDDRFERVRVRRFVRDI 211
           P   D +  R +V++ +R++
Sbjct: 198 PCPYDGQTTRDKVKKLLREL 217


>gi|73670143|ref|YP_306158.1| hypothetical protein Mbar_A2672 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397305|gb|AAZ71578.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 302

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 13/136 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS   L  +H +L +R    I+  AISVD  +       +     +   L 
Sbjct: 52  IAVALSGGKDSSVALYIVHKILGNRP--DIEIVAISVDEGINGYRPHSLEVAKSLTKMLG 109

Query: 82  IAHSVVSWKNSKPQT--GLMAAAREA---------RYALISEHAKTINATLIMTAHTFDD 130
           + H + S+K     T   L A  RE          R  +++  A  I AT ++T H  DD
Sbjct: 110 VRHIIKSFKEVHGVTMDELAAMDREKGACSYCGVLRKNILNRTALEIGATKLVTGHNLDD 169

Query: 131 QLETVYMRSQRDYAEK 146
           + +T+ +   R   E+
Sbjct: 170 EAQTILLNHLRGDVER 185


>gi|228470511|ref|ZP_04055378.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3]
 gi|228307807|gb|EEK16763.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3]
          Length = 494

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 90/227 (39%), Gaps = 37/227 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           +++A+SGG+DS  LL  L S+L  R             HC   LR  E+ +DE  +V+++
Sbjct: 34  VIIALSGGADSTALLWGL-SLLGYRCVAA---------HCNFHLRDDESDRDEA-FVTEL 82

Query: 77  CSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           C++L     R +     +  +     +  AARE RY    E  +  +A  I   H  +D 
Sbjct: 83  CAQLGVPLERASFDTYGYVATHQGVSVEMAARELRYHFFDELYERYDAQCIALGHHLEDN 142

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E + +        +G G+ G+   +         RP +      I  FL      +  D
Sbjct: 143 VEQLMIN-----LSQGAGVRGLRGMLPMREEGKYIRPLIDTPPRLIYDFLQTAEQPFVTD 197

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +N D    R  VR  +R +           F  L    + AVA  I
Sbjct: 198 STNADTTIRRNFVRHTLRPL-----------FDQLNPSFDQAVASTI 233


>gi|167619503|ref|ZP_02388134.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis Bt4]
 gi|257138682|ref|ZP_05586944.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264]
          Length = 482

 Score = 46.6 bits (109), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    
Sbjct: 16  APIAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQA 70

Query: 80  L--RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           L  R   + V    +  Q G+ A+AR+ RY  +        A  +  A   DDQ ETV +
Sbjct: 71  LGVRFDAARVDVPRASGQ-GVEASARDVRYRALETMCARYGARALWLAQHADDQAETVLL 129

Query: 138 RSQRDYAEKGMGLSGMCD------TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +  R     G G++G+          L D+     RP L   R  +  +  Q  + W +D
Sbjct: 130 QLLR-----GAGIAGLAAMAPQYRPALADVMR--VRPLLHLLRAQLERYAQQHALRWIDD 182

Query: 192 PSNTDDRFERVRVR 205
            SN D R+ R  +R
Sbjct: 183 ESNADTRYARNALR 196


>gi|188527970|ref|YP_001910657.1| hypothetical protein HPSH_06125 [Helicobacter pylori Shi470]
 gi|188144210|gb|ACD48627.1| hypothetical protein HPSH_06125 [Helicobacter pylori Shi470]
 gi|308063965|gb|ADO05852.1| hypothetical protein HPSAT_05705 [Helicobacter pylori Sat464]
 gi|317177929|dbj|BAJ55718.1| hypothetical protein HPF16_1121 [Helicobacter pylori F16]
 gi|317180912|dbj|BAJ58698.1| hypothetical protein HPF32_1116 [Helicobacter pylori F32]
          Length = 253

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|257093683|ref|YP_003167324.1| tRNA(Ile)-lysidine synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046207|gb|ACV35395.1| tRNA(Ile)-lysidine synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 468

 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 9/199 (4%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L     + V +SGG DS+ LL AL  +      G +  +AI VDH L   A    
Sbjct: 28  FLAARLAPGERLCVGLSGGRDSVVLLHALDGLRVRGLVGAL--AAIHVDHGLSANAGTWA 85

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + ++ C +L +   +V  +  +    G+ AAAR AR+ + +       A  +  AH  D
Sbjct: 86  GFCTEFCRQLGVPLDIVHVEVPRDDGEGIEAAARRARHRVFA----GCCADWLALAHHQD 141

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV  R  R     G   +GM           + RP L   R  I  +  + ++ W 
Sbjct: 142 DQAETVLFRLLRGAGVAGA--AGMPAERSQAGGPRLIRPLLDVPRTLIAGYAAENSLVWV 199

Query: 190 EDPSNTDDRFERVRVRRFV 208
           ED SN D R+ R  +R+ V
Sbjct: 200 EDESNADCRYRRSHLRQAV 218


>gi|34558077|ref|NP_907892.1| hypothetical protein WS1770 [Wolinella succinogenes DSM 1740]
 gi|61217316|sp|Q7MR31|TILS_WOLSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|34483795|emb|CAE10792.1| conserved hypothetical protein-Predicted ATPase of the PP-loop
           superfamily implicated in cell cycle control [Wolinella
           succinogenes]
          Length = 326

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 18/186 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DS  L      +L +R   +I F    V++  R  AK+E  Y  ++  R   
Sbjct: 19  LLGFSGGVDSTALFF----LLLER---EIPFDIALVNYHQRAQAKEEESYAKELAHR--- 68

Query: 83  AHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR-S 139
            H    +  S P   +     AR  RY              ++ AH   D+LE + MR +
Sbjct: 69  -HQKRCFTLSCPLGPSNFEHQARLERYRFFESLIHQEGYARLLLAHHLGDRLEWLLMRLA 127

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           Q       +G S     + Y+L     RP     +E +  +L Q  I + ED SN D + 
Sbjct: 128 QGSSLSTLLGFSSREIRLGYEL----IRPLGEITKEALYDYLHQHQIRYFEDESNRDPKP 183

Query: 200 ERVRVR 205
            R R R
Sbjct: 184 LRNRFR 189


>gi|308184928|ref|YP_003929061.1| putative PP-loop family ATPase [Helicobacter pylori SJM180]
 gi|308060848|gb|ADO02744.1| putative PP-loop family ATPase [Helicobacter pylori SJM180]
          Length = 253

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPRF-----FDSLENAFNNVQA 242


>gi|254491662|ref|ZP_05104841.1| hypothetical protein MDMS009_1997 [Methylophaga thiooxidans DMS010]
 gi|224463140|gb|EEF79410.1| hypothetical protein MDMS009_1997 [Methylophaga thiooxydans DMS010]
          Length = 441

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 9/188 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS    + LH + + +        AI VDH L   +     + + V   + 
Sbjct: 21  VCIAYSGGVDSH---VLLHLLANTQHPQLTSIRAIYVDHGLHAESDKWRDHCASVSKSID 77

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I   S+     +    GL AAAR+ARY   S  +      +++TA    DQ ET+ ++  
Sbjct: 78  IKFESLTVTVENIDNLGLEAAARQARYQAFS--SALFENEVLVTAQHQQDQAETLMLQLL 135

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+   G   T+     + I RP L   + DI  +     +SW EDPSN D    
Sbjct: 136 RGSGPSGLSAMGRESTMK---GMTILRPLLGLSKADILDYAQLHQLSWIEDPSNADLTLN 192

Query: 201 RVRVRRFV 208
           R  +R  V
Sbjct: 193 RNYLRHQV 200


>gi|253681114|ref|ZP_04861917.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str.
           1873]
 gi|253562963|gb|EES92409.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str.
           1873]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 15/177 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS+ LL  L++    + F    F  I++   L   A  +   +  +C  L 
Sbjct: 24  IAVGLSGGKDSITLLYLLNAY---KRFSPEPFELIAI--TLDPGAGADFTEMIRICKELN 78

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + + +   +      + + ++   +     R   +++HAK +    I   H  +D +ET+
Sbjct: 79  VPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKIALGHHKNDAIETL 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            M        +G   + + DT L   ++ I RP +    + I+SF+   NIS  E+P
Sbjct: 139 LM----SMFYEGRINTFLPDTYLSRADIHIIRPMVYIDEQSIKSFINNSNISIVENP 191


>gi|149280296|ref|ZP_01886418.1| tRNA(Ile)-lysidine synthetase [Pedobacter sp. BAL39]
 gi|149228985|gb|EDM34382.1| tRNA(Ile)-lysidine synthetase [Pedobacter sp. BAL39]
          Length = 461

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 27/193 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           IL+AVSGG DS  +L+A     S   FG        + HC   LR  E+ +DE  +V  +
Sbjct: 23  ILLAVSGGKDS--VLMAHLFKASGHPFG--------IAHCNFNLRGEESVRDE-HFVKML 71

Query: 77  CSRLRIAHSVVSW--KNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              L +   V  +  K    Q G+    AAR  RY    +        +I  A   DD +
Sbjct: 72  GLMLDVPVYVTHFDTKAYAKQHGVSTQMAARTLRYEWFEQLRIERGYQVIALAQHQDDAM 131

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +   R     G G+SG+        NL   RP +   R++I   ++  ++ + ED 
Sbjct: 132 ETVLLNLTR-----GTGISGLHGIFPRRGNLI--RPLMFLSRQEIDDLVVAHHLDFVEDS 184

Query: 193 SNTDDRFERVRVR 205
           SN    + R ++R
Sbjct: 185 SNLSSNYIRNKIR 197


>gi|255311017|ref|ZP_05353587.1| hypothetical protein Ctra62_01120 [Chlamydia trachomatis 6276]
 gi|255317318|ref|ZP_05358564.1| hypothetical protein Ctra6_01115 [Chlamydia trachomatis 6276s]
 gi|255506792|ref|ZP_05382431.1| hypothetical protein CtraD_01130 [Chlamydia trachomatis D(s)2923]
 gi|297748347|gb|ADI50893.1| TtcA [Chlamydia trachomatis D-EC]
 gi|297749227|gb|ADI51905.1| TtcA [Chlamydia trachomatis D-LC]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL+ L ++ S R F ++   AI +       A     Y+S +C +++
Sbjct: 66  IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 124

Query: 82  IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR- 138
           +    +   ++   P+          R  L+ + AK + AT +   H  DD ++T  M  
Sbjct: 125 VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 181

Query: 139 -SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
             + ++A    G+  + D +  +  + I RP +    + IR F
Sbjct: 182 LHKAEFA----GMLPIVDMV--NFGITILRPLIFIPEDLIRKF 218


>gi|291087307|ref|ZP_06571896.1| tRNA(Ile)-lysidine synthase [Clostridium sp. M62/1]
 gi|291075292|gb|EFE12656.1| tRNA(Ile)-lysidine synthase [Clostridium sp. M62/1]
          Length = 482

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 30/202 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
           ++V +SGG+DS+ LL    S+L+D RS   I+  A+ V H LR + A  +  +  ++C +
Sbjct: 39  VVVGLSGGADSVCLL----SLLTDMRSSLSIRLRAVHVHHGLRGQEADRDADFSRELCRK 94

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA-------------KTINATL---IM 123
           L I   ++  +N+  +      + E    L+   A             +   A L   I 
Sbjct: 95  LDIPF-ILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWEEEEREQEGAALPVRIA 153

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  DD  ET+       +  +G GL G+    +  +   + RP L   R++I  +L +
Sbjct: 154 VAHHGDDSAETILY-----HLFRGSGLRGLAG--IAPVRGRVIRPLLCVSRQEILEYLRE 206

Query: 184 RNISWCEDPSNTDDRFERVRVR 205
             +S+  D +N  + + R R+R
Sbjct: 207 EGLSYVTDSTNLLNDYTRNRLR 228


>gi|289525255|emb|CBJ14731.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]
 gi|296434803|gb|ADH16981.1| hypothetical protein E150_01125 [Chlamydia trachomatis E/150]
 gi|296435732|gb|ADH17906.1| hypothetical protein G9768_01115 [Chlamydia trachomatis G/9768]
 gi|296436656|gb|ADH18826.1| hypothetical protein G11222_01110 [Chlamydia trachomatis G/11222]
 gi|296437592|gb|ADH19753.1| hypothetical protein G11074_01115 [Chlamydia trachomatis G/11074]
 gi|296438523|gb|ADH20676.1| hypothetical protein E11023_01115 [Chlamydia trachomatis E/11023]
 gi|297140091|gb|ADH96849.1| hypothetical protein CTG9301_01115 [Chlamydia trachomatis G/9301]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL+ L ++ S R F ++   AI +       A     Y+S +C +++
Sbjct: 37  IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 95

Query: 82  IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR- 138
           +    +   ++   P+          R  L+ + AK + AT +   H  DD ++T  M  
Sbjct: 96  VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 152

Query: 139 -SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
             + ++A    G+  + D +  +  + I RP +    + IR F
Sbjct: 153 LHKAEFA----GMLPIVDMV--NFGITILRPLIFIPEDLIRKF 189


>gi|240172424|ref|ZP_04751083.1| cell cycle protein MesJ [Mycobacterium kansasii ATCC 12478]
          Length = 353

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G G   +     YD   W  RP L  RR+  ++  
Sbjct: 146 VLLGHTLDDQAETVLLGLGR-----GSGPRSIAGMRPYDPP-WC-RPLLGVRRDVTQAAC 198

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  ++  +DP NTD RF R R+R+ V
Sbjct: 199 RELGLTAWQDPHNTDRRFTRTRLRQEV 225


>gi|150398931|ref|YP_001322698.1| PP-loop domain-containing protein [Methanococcus vannielii SB]
 gi|150011634|gb|ABR54086.1| PP-loop domain protein [Methanococcus vannielii SB]
          Length = 323

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 40/203 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------RETAKDEVRYVSD 75
           ++V +SGG DS+ LL  L      R +G ++  AI+VD  +       ET K+ V+ +S 
Sbjct: 78  VVVGLSGGKDSLALLHLLEPY--KRKYG-VEIHAITVDLNIDGIRPWNETNKN-VKMISK 133

Query: 76  VCSRLRIAHSVVSW------------KNSK--PQTGLMAAAREARYALISEHAKTINATL 121
            C  L I H ++ +            KNSK    +   + +   R+ L +   +T N   
Sbjct: 134 TCENLNIPHKIIPYDENVVEMSKILSKNSKGIDYSPCFSCSISRRHILTNYAKETFNCEN 193

Query: 122 IMTA--HTFDDQLETVY-----------MRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +  A  HT +D  +T+            +   +++ E  +   G+  ++    N  + RP
Sbjct: 194 VKIALGHTLEDNSDTIIANILKGNIIKALEPIKNFDETKIDFDGLKVSL---KNCCMIRP 250

Query: 169 FLRCRREDIRSFLLQRNISWCED 191
            L    E I+  L + NI + +D
Sbjct: 251 LLNISEEKIKKALNECNIEYYKD 273


>gi|116748705|ref|YP_845392.1| tRNA(Ile)-lysidine synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116697769|gb|ABK16957.1| tRNA(Ile)-lysidine synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 470

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 15/182 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79
           H+LVAVSGG DS+ LL  L       + G+I  S +  +H LR    D +  +V  V  +
Sbjct: 24  HVLVAVSGGPDSIALLHLLAHQRESLAIGRI--SVLHFNHRLRGAESDADCVFVRSVAEK 81

Query: 80  LRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + +        V  ++  +  +  MAA                +A  I   HT +DQ E 
Sbjct: 82  MGLPVVCGEEDVRRYRQGRTISMEMAARERRHRFFRRS-LDQYSAQRIALGHTSNDQAEE 140

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +R  R     G+G SGM           + RP L   R +I  +L    I + ED SN
Sbjct: 141 VLLRLLR-----GVGPSGMEGMRPLGPG-GVIRPLLFAGRAEILEYLHDLKIPFREDSSN 194

Query: 195 TD 196
            +
Sbjct: 195 LE 196


>gi|255348575|ref|ZP_05380582.1| hypothetical protein Ctra70_01145 [Chlamydia trachomatis 70]
 gi|255503115|ref|ZP_05381505.1| hypothetical protein Ctra7_01155 [Chlamydia trachomatis 70s]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 12/162 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL+ L ++ S R F ++   AI +       A     Y+S +C +++
Sbjct: 66  IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 124

Query: 82  IAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +    +   ++   P+          R  L+ + AK + AT +   H  DD ++T  M  
Sbjct: 125 VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 181

Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF 180
               AE     +GM   + + +  + I RP +    + IR F
Sbjct: 182 LHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEDLIRKF 218


>gi|83720432|ref|YP_442474.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264]
 gi|83654257|gb|ABC38320.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264]
          Length = 494

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    
Sbjct: 28  APIAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQA 82

Query: 80  L--RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           L  R   + V    +  Q G+ A+AR+ RY  +        A  +  A   DDQ ETV +
Sbjct: 83  LGVRFDAARVDVPRASGQ-GVEASARDVRYRALETMCARYGARALWLAQHADDQAETVLL 141

Query: 138 RSQRDYAEKGMGLSGMCD------TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +  R     G G++G+          L D+     RP L   R  +  +  Q  + W +D
Sbjct: 142 QLLR-----GAGIAGLAAMAPQYRPALADVMR--VRPLLHLLRAQLERYAQQHALRWIDD 194

Query: 192 PSNTDDRFERVRVR 205
            SN D R+ R  +R
Sbjct: 195 ESNADTRYARNALR 208


>gi|227547905|ref|ZP_03977954.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227080010|gb|EEI17973.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 24/192 (12%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  +R+L  PA  ++ +SGG+DS+ L+ A  +   D         A+ VDH L+E + 
Sbjct: 14  ACRRSLRALHGPA--VIGLSGGADSLALVAAAAAEDKD-------VRAMIVDHQLQEGSD 64

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
              R  ++  +   +  SV++  N+       AA      AL+S          +  AHT
Sbjct: 65  QVARCAAEQANAWGVKASVIA-VNAGGDNLEAAAREARYAALLSFGVD------VWVAHT 117

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ + + R     GM   G  D         I RPFL  RR D R    +  ++
Sbjct: 118 ADDQAETLLLGALRGNP-SGMAARGGIDNR-------ILRPFLGIRRADTRGACAELGVT 169

Query: 188 WCEDPSNTDDRF 199
             EDP N D+ +
Sbjct: 170 PWEDPMNVDENY 181


>gi|317500413|ref|ZP_07958637.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089580|ref|ZP_08338479.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898168|gb|EFV20215.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404948|gb|EGG84486.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 244

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 18/200 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL ALH +   + F   KF  SA++VD      A   +  + ++C 
Sbjct: 25  HIAVGISGGKDSLTLLYALHGL---KRFYPRKFDLSAVTVDLGF---ADFNLEPIQNLCR 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + + +V         N + ++   +   + R   ++E  K +    +  AH  DD +
Sbjct: 79  ELEVPYKIVKSDIYDILFNVRQESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKDDII 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   S    T L  ++L + RP +     ++  F  + ++   +  
Sbjct: 139 ETMLL----SLIFEGRFYSFSPKTYLDRMDLTVIRPMMFIDEMEVIGFRNKYSLPVVKGK 194

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D   +R   +  +R+++
Sbjct: 195 CPVDGHTKRQYAKELLRELN 214


>gi|288932186|ref|YP_003436246.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
 gi|288894434|gb|ADC65971.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 18/129 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A+SGG DS+ L   L  +   R    ++F AI++D  +       V     VC  L 
Sbjct: 50  IALAMSGGKDSVTLAHTLIELYGKRR--DLEFFAITIDEGIEGYRPPTVEIAKKVCRDLG 107

Query: 82  IAHSVVSWKNSKPQTGL------MAAAREA-------RYALISEHAKTINATLIMTAHTF 128
           I H VVS++    + GL         +R A       R  L++  A+ + AT + T H  
Sbjct: 108 IEHVVVSFRE---EIGLDLDEMVERGSRNACTYCGVFRKYLLNRTARELGATKLATGHNL 164

Query: 129 DDQLETVYM 137
           DD+ +T+ +
Sbjct: 165 DDETQTILL 173


>gi|153814901|ref|ZP_01967569.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756]
 gi|145847932|gb|EDK24850.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 14/125 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL ALH +   + F   KF  SA++VD      A   +  + ++C 
Sbjct: 31  HIAVGISGGKDSLTLLYALHGL---KRFYPRKFDLSAVTVDLGF---ADFNLEPIQNLCR 84

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + + +V         N + ++   +   + R   ++E  K +    +  AH  DD +
Sbjct: 85  ELEVPYKIVKSDIYDILFNVRQESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKDDII 144

Query: 133 ETVYM 137
           ET+ +
Sbjct: 145 ETMLL 149


>gi|166154427|ref|YP_001654545.1| hypothetical protein CTL0469 [Chlamydia trachomatis 434/Bu]
 gi|166155302|ref|YP_001653557.1| hypothetical protein CTLon_0464 [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335686|ref|ZP_07223930.1| hypothetical protein CtraL_02630 [Chlamydia trachomatis L2tet1]
 gi|165930415|emb|CAP03908.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu]
 gi|165931290|emb|CAP06862.1| conserved hypothetical protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL+ L ++ S R F ++   AI +       A     Y+S +C +++
Sbjct: 37  IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 95

Query: 82  IAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +   S+ S ++   P+          R  L+ + AK + AT +   H  DD ++T  M  
Sbjct: 96  VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 152

Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF 180
               AE     +GM   + + +  + I RP +    + IR F
Sbjct: 153 LHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEDLIRKF 189


>gi|197303257|ref|ZP_03168298.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC
           29176]
 gi|197297683|gb|EDY32242.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC
           29176]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 22/201 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + V VSGG DS+ LL A+  +   R + K  + SAI+   C       +   VSD C  L
Sbjct: 26  VAVGVSGGKDSLTLLYAMRQL--QRFYPKNFELSAIT---CNVGFEGMDFTGVSDFCDSL 80

Query: 81  RIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +I +  V  K         P+    +   + R   + +    +    I  AH  DD +ET
Sbjct: 81  KIPYEQVDTKIAEIVFQENPEIRPCSLCAKLRKGAMYKQLAELGINKIAYAHNKDDFIET 140

Query: 135 VYMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
             M      R YA   M       T+L +  + + RP +    + + +F++++ I   ++
Sbjct: 141 ALMSLIYEGRFYAFPPM-------TVLPEAGVTVIRPMMYVPEKGVANFVVEQGIQIVKN 193

Query: 192 PSNTDDRFERVRVRRFVRDID 212
               D   +R   R+ +  I+
Sbjct: 194 ACPVDGSTKREYARQLMEQIN 214


>gi|225419721|ref|ZP_03762024.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme
           DSM 15981]
 gi|225041631|gb|EEG51877.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme
           DSM 15981]
          Length = 240

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 14/196 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + + +SGG DS+ LL AL S L      +    AI+VD  L     D +R +   C    
Sbjct: 26  VALGMSGGKDSLTLLYAL-SHLQKFYPKRFDLCAITVDLGLGNLELDPIRAL---CEEFA 81

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + + VV  +       ++ ++   +   + R   ++  A       +  AH  DD +ET 
Sbjct: 82  VPYEVVPTQIGKVLFETRKESNPCSLCAKMRKGALNNKALEFGCNKVAYAHHRDDLIETA 141

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            M        +G   +    T L    L + RP L     ++  F  + ++  C++P   
Sbjct: 142 LM----SLIYEGHFYAFSPRTKLDRTGLTVIRPLLYASEAEVVGFKNKYHLPVCKNPCPM 197

Query: 196 DDRFERVRVRRFVRDI 211
           D   +R  V+  +RD+
Sbjct: 198 DGHTKREYVKNLIRDL 213


>gi|15604937|ref|NP_219721.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|3328625|gb|AAC67809.1| PP-Loop Superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
          Length = 234

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 14/163 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL+ L ++ S R F ++   AI +       A     Y+S +C +++
Sbjct: 17  IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 75

Query: 82  IAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR- 138
           +   S+ S ++   P+          R  L+ + AK + AT +   H  DD ++T  M  
Sbjct: 76  VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 132

Query: 139 -SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
             + ++A    G+  + D +  +  + I RP +    + IR F
Sbjct: 133 LHKAEFA----GMLPIVDMV--NFGITILRPLIFIPEDLIRKF 169


>gi|88854794|ref|ZP_01129460.1| hypothetical protein A20C1_08023 [marine actinobacterium PHSC20C1]
 gi|88815955|gb|EAR25811.1| hypothetical protein A20C1_08023 [marine actinobacterium PHSC20C1]
          Length = 340

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 86/193 (44%), Gaps = 22/193 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG DS   L    +   + S   ++  A+ V+H L++ + D     +     L 
Sbjct: 37  VLVALSGGPDS---LALAAATAFEASKAGMRAGAVIVNHNLQDGSADVAAAAARQARDLG 93

Query: 82  IA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +      S++      P++    AAR+ARYA ++E A    A  ++  HT DDQ ETV +
Sbjct: 94  LDPVDIRSILVGDAGGPES----AARDARYAALAEAAAEYGAIRVLLGHTLDDQAETVLL 149

Query: 138 RSQRDYAEKGMG-LSGMC-DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
              R     G G L GM  DT  Y       RP L   RE          I    DP N 
Sbjct: 150 GLARG---SGAGSLKGMAVDTGEY------LRPLLAVARETTVQCCEDSGIVAWNDPHNL 200

Query: 196 DDRFERVRVRRFV 208
           D  + RVRVR+ V
Sbjct: 201 DTSYTRVRVRQTV 213


>gi|15612173|ref|NP_223825.1| hypothetical protein jhp1108 [Helicobacter pylori J99]
 gi|4155705|gb|AAD06688.1| putative [Helicobacter pylori J99]
          Length = 253

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F K  F A++V + L E     ++++SD+C    
Sbjct: 29  ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALGEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIRVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|166363410|ref|YP_001655683.1| tRNA(Ile)-lysidine synthase [Microcystis aeruginosa NIES-843]
 gi|166085783|dbj|BAG00491.1| tRNA(Ile)-lysidine synthase [Microcystis aeruginosa NIES-843]
          Length = 324

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 13/189 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVC 77
           A +LVA+S G DS+ L   L  + S   +       +++ HC    + D   V +V  + 
Sbjct: 26  ASLLVALSAGQDSLCLGQLLLDLRSRWGW------QLAIAHCDHRWSSDRGLVTHVRKIA 79

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++   + +   + P     A AR+ RY  +   A+      ++TAHT  D+ ET   
Sbjct: 80  EIWQLPVYITT---APPMAETEAKARQWRYQALQTIAQEQGFNYLLTAHTRSDRAETFLY 136

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G+       ++  D  +++ RP L   R +  +F   R +    D +N + 
Sbjct: 137 NLTRGAGSDGLSALTWLTSLTSD--IFLVRPLLNVTRGETFAFCQSRELPIWYDRANENL 194

Query: 198 RFERVRVRR 206
           R+ R R+R+
Sbjct: 195 RYARNRIRQ 203


>gi|76788939|ref|YP_328025.1| TtcA [Chlamydia trachomatis A/HAR-13]
 gi|237804562|ref|YP_002888716.1| hypothetical protein CTB_2111 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167469|gb|AAX50477.1| TtcA [Chlamydia trachomatis A/HAR-13]
 gi|231272862|emb|CAX09772.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+ LL+ L ++ S R F ++   AI +       A     Y+S +C +++
Sbjct: 37  IAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSSICDKIQ 95

Query: 82  IAH-SVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +   S+ S ++   P+          R  L+ + AK + AT +   H  DD ++T  M  
Sbjct: 96  VPLISIPSPYETENPEC---YTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTTLMNL 152

Query: 140 QRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF 180
               AE     +GM   + + +  + I RP +    + IR F
Sbjct: 153 LHK-AE----FAGMLPVVDMVNFGITILRPLIFIPEDLIRKF 189


>gi|282879854|ref|ZP_06288581.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1]
 gi|281306248|gb|EFA98281.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1]
          Length = 448

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 21/189 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           LVA+SGG+DS+ LL  L ++         +  A+     LR E A  ++ +  D+C++L+
Sbjct: 25  LVALSGGADSVCLLRCLQAL-------GYRLEAVHCHFHLRAEEADRDLSFCQDLCAKLQ 77

Query: 82  IA-HSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I  HS      +  Q+    +  AAR+ RY+   +  +  +A  +   H  +D +ET+ +
Sbjct: 78  IPFHSTHFDTKTYAQSHGVSIEMAARDLRYSFFRKMVQARHAAAVCVGHHSEDSVETILL 137

Query: 138 RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              R     G+ G+S     I+        RP L   R  I  +L     ++  D +N  
Sbjct: 138 NLVRSTGIHGLTGISPKKGIIV--------RPLLCVNRLKIIDYLHSIQQNYVTDSTNFV 189

Query: 197 DRFERVRVR 205
              +R ++R
Sbjct: 190 ADVQRNQMR 198


>gi|239623968|ref|ZP_04666999.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521999|gb|EEQ61865.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 241

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 16/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           I V VSGG DS+   +        R +  K +  A++VD  L     + VR   ++C   
Sbjct: 26  IAVGVSGGKDSL--ALLYALHHLQRFYPRKYELCAVTVDLGLGNMDLEPVR---ELCGEF 80

Query: 81  RIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            + ++V+  +  K       ++   +   + R   ++E  K +    I  AH  DD +ET
Sbjct: 81  GVPYTVIPTEIGKVLFDIRKESNPCSLCAKMRKGALNEKVKELGCNKIAYAHHRDDVIET 140

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + M        +G   S    T L  ++L + RPFL     DI  F  +  +  C++P  
Sbjct: 141 MLM----SLFYEGRFYSFSPYTYLDRMDLTVIRPFLFVTEADIVGFKNKYQLPVCKNPCP 196

Query: 195 TDDRFERVRVRRFVRDIDLHALYLK 219
            D   +R  ++  ++++     +LK
Sbjct: 197 MDGYTKRQYIKDLIKELQKDNPHLK 221


>gi|261884707|ref|ZP_06008746.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 229

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 15/113 (13%)

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----DTI 157
           R+ R+    E   T N   ++ AH  +D LE ++M+       KG G   +C     +T 
Sbjct: 6   RDIRHKFFEEICITFNYDPLILAHQLNDCLEWLFMQ-----LSKGSGTVQLCGLEPTNTK 60

Query: 158 LYDL-----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           + +       + + RP +   R +I S+L Q+NI++  D SN D +F+R  +R
Sbjct: 61  IAEFENIKKQISVIRPLINVSRNEIISYLKQKNINYFTDISNFDFKFKRNFIR 113


>gi|315446257|ref|YP_004079136.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1]
 gi|315264560|gb|ADU01302.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1]
          Length = 322

 Score = 46.2 bits (108), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G G   +     YDL  W  RP L  RR+      
Sbjct: 116 VLLGHTLDDQAETVLLGLGR-----GSGPRSIAGMRPYDLP-W-GRPLLGVRRDTTHRAC 168

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  ++  +DP N D R+ RVR+R  V
Sbjct: 169 AELGLNPWQDPHNLDPRYTRVRLRTEV 195


>gi|167758161|ref|ZP_02430288.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704]
 gi|167664058|gb|EDS08188.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704]
          Length = 263

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 18/200 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL ALH +   R F   K + SA++VD    E     V Y   +C 
Sbjct: 44  HIAVGISGGKDSLTLLYALHGL---RRFYPKKFELSAVTVDLGYSECDFTPVVY---LCE 97

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + + +V         + + ++   +   + R   +++  K +    +  AH  DD +
Sbjct: 98  ELGVPYKIVKTDIAHILFDERKESNPCSLCAKMRKGALNQAVKEMGCNKVAYAHHKDDII 157

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   S    T L  ++L + RP +     ++  F  + ++      
Sbjct: 158 ETMLL----SLIFEGRFYSFSPKTYLDRMDLTVIRPIMFVDEAEVIGFKQKYDLPVVTSR 213

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D   +R   +  V+ +D
Sbjct: 214 CPIDGYTKRQYAKELVKQLD 233


>gi|207108367|ref|ZP_03242529.1| hypothetical protein HpylH_01795 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 236

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 25/208 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  ILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLH 214
               P++      R+  + F++++ +LH
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLH 226


>gi|315587072|gb|ADU41453.1| PP-loop family protein [Helicobacter pylori 35A]
          Length = 253

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNIQA 242


>gi|262196733|ref|YP_003267942.1| tRNA(Ile)-lysidine synthetase [Haliangium ochraceum DSM 14365]
 gi|262080080|gb|ACY16049.1| tRNA(Ile)-lysidine synthetase [Haliangium ochraceum DSM 14365]
          Length = 427

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 80/181 (44%), Gaps = 13/181 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS---VDHCLRETAKDEVRYVSDVCS 78
           I VA SGG DS  L    H+ L   S  + +   ++   VDH LR  +  +   V  +  
Sbjct: 23  IGVACSGGPDSSALA---HACLRLASAERARIGPVTLLHVDHGLRPDSGADAAAVYALAE 79

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
               A  VV  +  + +  L AAAR+AR+A +   A+ +    ++ AHT  DQ ETV MR
Sbjct: 80  PFGAAVHVVRAEVDRDRASLEAAARDARFAALDALAEQLGLRFVLLAHTASDQAETVLMR 139

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G G+ G+    +        RP L   R DI ++  +  +    DP N D  
Sbjct: 140 VLR-----GTGVFGL--AAMQPRRGRYLRPLLGLERGDIEAYCARAGVVALADPMNRDPA 192

Query: 199 F 199
           F
Sbjct: 193 F 193


>gi|3929907|emb|CAA10333.1| hypothetical protein [Wolinella succinogenes]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 18/186 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DS  L      +L +R   +I F    V++  R  AK+E  Y  ++  R   
Sbjct: 19  LLGFSGGVDSTALFF----LLLER---EIPFDIALVNYHQRAQAKEEESYAKELAHR--- 68

Query: 83  AHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR-S 139
            H    +  S P   +     AR  RY              ++ AH   D+LE + MR +
Sbjct: 69  -HQKRCFTLSCPLGPSNFEHQARLERYRFFESLIHQEGYARLLLAHHLGDRLEWLLMRLA 127

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           Q       +G S     + Y+L     RP     +E +  +L Q  I + ED SN D + 
Sbjct: 128 QGSSLSTLLGFSSREIRLGYEL----IRPLGEITKEALYDYLHQHQIRYFEDESNRDPKP 183

Query: 200 ERVRVR 205
            R R R
Sbjct: 184 LRNRFR 189


>gi|167581389|ref|ZP_02374263.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis TXDOH]
          Length = 478

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A I +A SGG DS    + LH+       G  +  A+ V H L   A   + + ++    
Sbjct: 16  APIAIAYSGGLDST---VLLHAAAR--IAGAGRCIALHVHHGLSANADAWLAHCAETAQA 70

Query: 80  L--RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           L  R   + V    +  Q G+ A+AR+ RY  +        A  +  A   DDQ ETV +
Sbjct: 71  LGVRFDAARVDVPRASGQ-GVEASARDVRYRALETMCARYGARALWLAQHADDQAETVLL 129

Query: 138 RSQRDYAEKGMGLSGMCD------TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +  R     G G++G+          L D+     RP L   R  +  +  Q  + W +D
Sbjct: 130 QLLR-----GAGIAGLAAMAPQYRPALADVMR--VRPLLHLLRAQLERYAQQHALRWIDD 182

Query: 192 PSNTDDRFERVRVR 205
            SN D R+ R  +R
Sbjct: 183 ESNADTRYARNALR 196


>gi|302835227|ref|XP_002949175.1| hypothetical protein VOLCADRAFT_59111 [Volvox carteri f.
           nagariensis]
 gi|300265477|gb|EFJ49668.1| hypothetical protein VOLCADRAFT_59111 [Volvox carteri f.
           nagariensis]
          Length = 409

 Score = 45.8 bits (107), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 125/311 (40%), Gaps = 47/311 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL   H+++  R     +   +  DH  R  +     +V ++ ++  
Sbjct: 25  VLVAVSGGQDSVCLL---HALVDLRPIWGWRLGVVHCDHGWRVDSAVNADFVRELAAQ-- 79

Query: 82  IAH-SVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             H  +  +  + PQ  + +  AARE RY + ++ A      +++T HT  D+ ET+ + 
Sbjct: 80  --HLDLPCYVRAAPQGAVPSERAAREWRYRVFADVAFAHGYDVVVTGHTATDRAETMLLN 137

Query: 139 SQRDYAEKG---------MGLSGMCDTILY-----------DLNLWISRPFLRCRREDIR 178
             R     G         +G     D                 ++ + RP L   R   +
Sbjct: 138 LLRGSGPDGLVALARSRPLGSYSPADPTCAPGGELDIPRARSRSVRLVRPLLEFSRSQTQ 197

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            F+ Q  + +  D +N  +   R R+R  V                 LR   N  +   +
Sbjct: 198 EFVEQLALPYFHDTTNDCNDLRRNRLRNEV--------------LPALRAGFNPRLDQAL 243

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
            ++L V    +  +++   ++   ++ Y  R S+   G   S+P   S +  ML L   +
Sbjct: 244 FRFLEVLDADLEYLTRVTEDLYDNVVSYEYRASS---GDHSSVPAQGSSDERMLKLHELR 300

Query: 299 RGCVSIGRVVI 309
           R  +++ R V+
Sbjct: 301 RLPLAMQRRVV 311


>gi|294155987|ref|YP_003560371.1| tRNA(Ile)-lysidine synthase [Mycoplasma crocodyli MP145]
 gi|291600488|gb|ADE19984.1| tRNA(Ile)-lysidine synthase [Mycoplasma crocodyli MP145]
          Length = 289

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 20/188 (10%)

Query: 23  LVAVSGGSDSMGLLIAL---HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           L+A+SGG DSM LL      ++V+           A  V++  RE +  + + VSD C +
Sbjct: 7   LIALSGGPDSMFLLNEYSKNNNVV-----------ACFVNYNQREDSCVDEQIVSDFCKK 55

Query: 80  LRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             I  + +V  K    +      AR  R+    +         ++ AH  DD LE+ Y++
Sbjct: 56  NNIILYKLVLNKIDYQKGNFQDWARTKRFDFFKDIYDKECCDALLIAHHKDDFLESYYLQ 115

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197
                     G+     T +Y ++  + +P L +  ++ I  F  + NI +  D SN  D
Sbjct: 116 KNSSRLRITYGMKQ--KTFIYGMH--VEKPLLFKYFKKQILEFNDKHNIPYAIDKSNFSD 171

Query: 198 RFERVRVR 205
           +++R  +R
Sbjct: 172 KYQRNIIR 179


>gi|118443752|ref|YP_878987.1| hypothetical protein NT01CX_0521 [Clostridium novyi NT]
 gi|118134208|gb|ABK61252.1| conserved hypothetical protein [Clostridium novyi NT]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 15/177 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS+ LL  L++    + F    F  I++   L   A  +   +  +C  L 
Sbjct: 24  IAVGLSGGKDSITLLYLLNAY---KRFSPEPFELIAI--TLDPGAGADFSEMIRICKELN 78

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + + +   K      + + ++   +     R   +++HAK +    +   H  +D +ET+
Sbjct: 79  VPYYLFKTKIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKVALGHHKNDAIETL 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            M        +G   +   DT L   +L I RP +    ++I++F+   NI   E+P
Sbjct: 139 LM----SMFYEGRINTFSPDTYLSRTDLHIIRPMIYIDEQNIKTFIKNSNIPIVENP 191


>gi|311740141|ref|ZP_07713973.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304696|gb|EFQ80767.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 219

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +  AHT DDQ ET+ + + R        ++GM +    +    + RP L  RR D     
Sbjct: 28  VAVAHTADDQAETLLLGALRGR------VTGMSERSEVE-GARVVRPLLGVRRADTEGAC 80

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  +S   DP N D  F RV +RR V
Sbjct: 81  AELGLSAWRDPQNADTNFRRVALRREV 107


>gi|308062463|gb|ADO04351.1| hypothetical protein HPCU_06025 [Helicobacter pylori Cuz20]
          Length = 253

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCQEQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKDFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|161524379|ref|YP_001579391.1| tRNA(Ile)-lysidine synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350866|ref|YP_001946494.1| cell cycle protein [Burkholderia multivorans ATCC 17616]
 gi|160341808|gb|ABX14894.1| tRNA(Ile)-lysidine synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334888|dbj|BAG43958.1| cell cycle protein [Burkholderia multivorans ATCC 17616]
          Length = 468

 Score = 45.8 bits (107), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 19/211 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A I +A SGG DS  LL A     + R  G  +  A+ V H L   A     +  +  +R
Sbjct: 28  ARIAIAYSGGLDSSVLLDA-----AVRVAGASRCVALHVHHGLSANADAWAAHAREQAAR 82

Query: 80  LRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           L +A   +     +    G+ A+ARE RYA +        A  +  A   DDQ ETV ++
Sbjct: 83  LGVAFEAMHVDVPRDSGVGIEASARERRYAALDAMCARHGAAALWLAQHADDQAETVLLQ 142

Query: 139 SQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     G G++G+            ++   RP LR  R  +  +  +  +SW +D SN
Sbjct: 143 LLR-----GAGIAGLAAMAPRYRPDGASVERVRPLLRLLRAQLERYAAEHALSWIDDESN 197

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            D R+ R  +R  V    L AL +    F+D
Sbjct: 198 ADTRYARNALRIDV----LPALAVHFPGFRD 224


>gi|254284141|ref|ZP_04959109.1| tRNA(Ile)-lysidine synthase [gamma proteobacterium NOR51-B]
 gi|219680344|gb|EED36693.1| tRNA(Ile)-lysidine synthase [gamma proteobacterium NOR51-B]
          Length = 358

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYD 160
           AREARY    +      A  +  AH  DDQ+ETV  R  R    +G+ G+          
Sbjct: 14  AREARYRAFDDAVGQGEA--LFQAHHLDDQVETVLYRLLRGSGPRGLRGIPAERSLTRGK 71

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
               + RP L   R ++ +F     +S+ +DPSN D RF+R  +R  V
Sbjct: 72  ----VVRPLLDIGRLELLNFCRDARLSFVQDPSNDDFRFDRNYLRHAV 115


>gi|296242202|ref|YP_003649689.1| PP-loop domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094786|gb|ADG90737.1| PP-loop domain protein [Thermosphaera aggregans DSM 11486]
          Length = 339

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 17/139 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L    HI+V VSGG DSM LL  L  +   R     + +A+ VD  ++   ++ +  +
Sbjct: 43  RMLGEKEHIVVGVSGGKDSMSLLHILRKL--SRKNKNWRLTALLVDEGIKGYRENTIPAL 100

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTIN 118
                R  + + +VS+K+    T   +++  RE              R  ++++ A+ + 
Sbjct: 101 KIYAERNMVEYKIVSFKDYLGLTLDEIVSTGREKGLPYLPCSYCGVFRRYVLNKAARELG 160

Query: 119 ATLIMTAHTFDDQLETVYM 137
            T++ TAH  DD ++T  M
Sbjct: 161 GTVLATAHNLDDIVQTYLM 179


>gi|221198379|ref|ZP_03571425.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2M]
 gi|221208944|ref|ZP_03581941.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2]
 gi|221171227|gb|EEE03677.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2]
 gi|221182311|gb|EEE14712.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2M]
          Length = 468

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 91/211 (43%), Gaps = 19/211 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A I +A SGG DS  LL A     + R  G  +  A+ V H L   A     +  +  +R
Sbjct: 28  ARIAIAYSGGLDSSVLLDA-----AVRVAGASRCVALHVHHGLSANADAWAAHAREQAAR 82

Query: 80  LRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           L +A   +     +    G+ A+ARE RYA +        A  +  A   DDQ ETV ++
Sbjct: 83  LGVAFEAMHVDVPRDSGVGIEASARERRYAALDAMCARHGAAALWLAQHADDQAETVLLQ 142

Query: 139 SQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     G G++G+            ++   RP LR  R  +  +  +  +SW +D SN
Sbjct: 143 LLR-----GAGIAGLAAMAPRYRPDGASVERVRPLLRLLRAQLERYAAEHALSWIDDESN 197

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            D R+ R  +R  V    L AL +    F+D
Sbjct: 198 ADTRYARNALRIDV----LPALAVHFPGFRD 224


>gi|225010841|ref|ZP_03701309.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005049|gb|EEG43003.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-3C]
          Length = 442

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 21/204 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLR 81
           L+A SGG DS+ +L  L S         + F+    +  LR  A   + ++V+++   L 
Sbjct: 22  LLACSGGVDSV-VLAHLCSQCG------LTFALAHCNFNLRGAASTADAQFVANLALELG 74

Query: 82  IAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +     S+  +    K +  +   AR  RY    +  KT N   ++TAH  +D LET+ +
Sbjct: 75  VPVFQTSFDTNAYIKKHKVSIQMGARTLRYNWFDKLIKTHNYQYLLTAHQREDALETMII 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G G+ G+    + +   +I RP +   +  + +F  + +I W ED SN   
Sbjct: 135 NLSR-----GTGIEGLLG--IPEKRDYIRRPLICFAKAALLAFANENHIQWREDSSNDST 187

Query: 198 RFERVRVRRFVRDI--DLHALYLK 219
            + R ++R  V  +  DLH   L+
Sbjct: 188 DYLRNKIRHEVLPLMADLHPTALE 211


>gi|109947003|ref|YP_664231.1| hypothetical protein Hac_0396 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714224|emb|CAJ99232.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K  F A++V + L E    +++++SD+C    
Sbjct: 29  VLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGE----DLKWLSDLCKDQG 83

Query: 82  IAHSVVSWK-----NSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++  +     N K   ++   +     R   +   A       +  AH  DD +E+
Sbjct: 84  IEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED--- 191
            +M    ++   G  L  M      +  L + RP ++ R      F+  +NI    D   
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPIAPDCNC 198

Query: 192 ----PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
               P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 199 PAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|302870332|ref|YP_003838969.1| tRNA(Ile)-lysidine synthetase [Micromonospora aurantiaca ATCC
           27029]
 gi|302573191|gb|ADL49393.1| tRNA(Ile)-lysidine synthetase [Micromonospora aurantiaca ATCC
           27029]
          Length = 316

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 88/203 (43%), Gaps = 9/203 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L     +LVA SGG+DS+ L  A   V      G+ +   ++VDH L+  + 
Sbjct: 4   AVRRVLTGLPGGGPVLVACSGGADSLALAAATAFVAP--RLGR-QAGLVTVDHGLQAGSA 60

Query: 68  DEVRYVSD--VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +    V+D      L     +    + +P     AA      ALI+  A   +A  ++  
Sbjct: 61  ERAEAVADWARAEGLDPVEVLPVRVDGRPGGPEAAAREARYEALIAA-AHRFDAVGVLLG 119

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT D+Q ETV +   R    +  GLSGM +    D  + + RP L   R + R+      
Sbjct: 120 HTRDEQAETVLLALARGAGPR--GLSGMPERRDVD-GVPLLRPLLDVPRANTRAACEALG 176

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           +    DP N D  + R RVR  V
Sbjct: 177 LDPWADPHNADPAYARARVRSDV 199


>gi|33596889|ref|NP_884532.1| hypothetical protein BPP2286 [Bordetella parapertussis 12822]
 gi|61216608|sp|Q7W859|TILS_BORPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33573590|emb|CAE37584.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 344

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ AAAR ARY  ++  A+      I+ AH  +DQ ETV +R  R    +GM  + M   
Sbjct: 110 GMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETVLLRLLRGTGLQGM--AAMAPL 167

Query: 157 ILYDLNLWISRPFLRCRREDIRSF--LLQRNISW--CEDPSNTDDRFERVRVR 205
              D   ++ RP+L   R  I +    ++    W   +DP+NTD R+ R  VR
Sbjct: 168 SERDGVAYL-RPWLDVDRAAILALAGAVRAQCGWQAVQDPTNTDPRYARAAVR 219


>gi|33600723|ref|NP_888283.1| hypothetical protein BB1738 [Bordetella bronchiseptica RB50]
 gi|61216609|sp|Q7WLK7|TILS_BORBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33568323|emb|CAE32235.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 344

 Score = 45.4 bits (106), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ AAAR ARY  ++  A+      I+ AH  +DQ ETV +R  R    +GM  + M   
Sbjct: 110 GMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETVLLRLLRGTGLQGM--AAMAPL 167

Query: 157 ILYDLNLWISRPFLRCRREDIRSF--LLQRNISW--CEDPSNTDDRFERVRVR 205
              D   ++ RP+L   R  I +    ++    W   +DP+NTD R+ R  VR
Sbjct: 168 SERDGVAYL-RPWLDVDRAAILALAGAVRAQCGWQAVQDPTNTDPRYARAAVR 219


>gi|88603458|ref|YP_503636.1| hypothetical protein Mhun_2212 [Methanospirillum hungatei JF-1]
 gi|88188920|gb|ABD41917.1| Protein of unknown function UPF0021 [Methanospirillum hungatei
           JF-1]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 40/196 (20%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            VR ++ +   P  + VA SGG DS  LL  L  + S+     I   A++VD  +    +
Sbjct: 38  EVRRYLITKRLPKTLGVAFSGGKDSTALLKVLSEIRSEFPSSII---ALTVDEGIEGYRQ 94

Query: 68  DEVRYVSDVCSRLRIAHSVV----------------SWKNSKPQTGLMAAAREARYALIS 111
           D +R  ++ C  LRI H ++                S +N+    G++   R A   L  
Sbjct: 95  DTIRAATETCLTLRIPHEIIRFQDLYGHSLDHLVSGSERNACTICGIL--RRRALEVLAQ 152

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWIS--- 166
           +H      T+I T H  DD  +T  M +          +SG    I   Y+ + W +   
Sbjct: 153 KH----KITMIATGHNQDDHAQTTVMNA----------ISGDVRKIFTGYEPSSWYAQRI 198

Query: 167 RPFLRCRREDIRSFLL 182
           +PF R   +++  + L
Sbjct: 199 KPFARVSEKEVTLYAL 214


>gi|134299184|ref|YP_001112680.1| PP-loop domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051884|gb|ABO49855.1| PP-loop domain protein [Desulfotomaculum reducens MI-1]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 102/245 (41%), Gaps = 42/245 (17%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVR 71
           +L+ P   ++V VSGG DS  LL  L S+   R   K+ F   A+ +D  L      +++
Sbjct: 21  NLIEPGDKVVVGVSGGKDSNSLLYCL-SLYHRRYLKKVPFELHAVHLDMGLGA----DLQ 75

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA---------RYALISEHAKTINATLI 122
            + ++C RL I    ++ K++   T L    +E          R   +   A  +    +
Sbjct: 76  PMKELCQRLAIP---LTLKHTDIGTILFDIRKETNPCSLCANLRRGALHSAALELGFNKV 132

Query: 123 MTAHTFDDQLETVYMR-----SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             AH  DD +ET +M      + + ++ K         T L   +L + RPF+      +
Sbjct: 133 ALAHHLDDVMETFFMSLLFNGNMKTFSPK---------TYLDRTDLTLIRPFVYVTENQV 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           ++ L   NI    +P   + + +R  ++  +  +         +++ D+R K   ++   
Sbjct: 184 KALLPLENIPVIHNPCPANKQTKREEIKNLINQLS--------EQYPDIRQKFLTSLHNF 235

Query: 238 IPKYL 242
            PK L
Sbjct: 236 DPKNL 240


>gi|116071731|ref|ZP_01468999.1| possible MesJ-like protein [Synechococcus sp. BL107]
 gi|116065354|gb|EAU71112.1| possible MesJ-like protein [Synechococcus sp. BL107]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 73/189 (38%), Gaps = 8/189 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVSGG DSM LL  L  + +   +  + +     DH     +      +   C    
Sbjct: 35  LVVAVSGGQDSMALLGLLRDLTAVHHWTLVLWHG---DHHWHPHSSQIASALKQWCDDQG 91

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +A  V +     PQT   A AR  RY  +++     N    +T HT  D+ ET+ +++ R
Sbjct: 92  LALQVETAPEELPQT--EADARSWRYRCLTQ-LTNANGADAVTGHTASDRAETLLLQASR 148

Query: 142 DYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                G+G       +         + RP L   R +         +    DP N    F
Sbjct: 149 GSDLAGLGSLRAVRPLQAHAPEEAQLRRPLLGFSRSETVQICSDLQLPIWNDPGNQSTDF 208

Query: 200 ERVRVRRFV 208
            R R+R  V
Sbjct: 209 ARNRIRHEV 217


>gi|155371675|ref|YP_001427209.1| hypothetical protein ATCV1_Z728L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124995|gb|ABT16862.1| hypothetical protein ATCV1_Z728L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 504

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 19/197 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V P+ I +++SGG DSM L   L  +   R+    +     V++  R  A DE  +V+D 
Sbjct: 200 VSPSEITMSISGGVDSMTLFHILSGL---RNVYGYELRVAMVNYANRACAYDEETFVADW 256

Query: 77  CSRLRIAHSV--VSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            +      ++  +   + KP      +T      R  RY +    A+      +   H  
Sbjct: 257 VNWNGHVLNIRRIDEISRKPCVDMGMRTTYETFTRNVRYGVYKTIARD---AYVAMGHNK 313

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD LE ++     +   K   LSGM DT++    +   RP L   ++DI  +    NI +
Sbjct: 314 DDVLENIFQNVAME--TKYENLSGM-DTVVEQDGIKFFRPLLGVAKDDIVEYARSHNIPF 370

Query: 189 CEDPSNTDDRFERVRVR 205
              P++T   F R ++R
Sbjct: 371 L--PNSTPPHFMRGQIR 385


>gi|302878626|ref|YP_003847190.1| tRNA(Ile)-lysidine synthetase [Gallionella capsiferriformans ES-2]
 gi|302581415|gb|ADL55426.1| tRNA(Ile)-lysidine synthetase [Gallionella capsiferriformans ES-2]
          Length = 449

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 11/183 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ LL  LH +    S+   K SA+ V H +   A     +   +C R +
Sbjct: 30  ILLGLSGGVDSVVLLHLLHHLAPRFSW---KLSALHVHHGISRNADSWAEFCRLLCERHQ 86

Query: 82  IAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I   +  V     + Q G+ AAAR  R+A             +  AH  DDQ+ET++++ 
Sbjct: 87  IPLCIERVDIAPLRSQ-GIEAAARRLRHAAFDAQ----RCDFVALAHHADDQVETLFLQL 141

Query: 140 QRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            R    KG   +  +           + RP L+  R++I ++  ++ + W ED SN D+R
Sbjct: 142 LRGAGVKGASAMPVLSQPKKTQRTHRLVRPLLQFTRDEILTYAAEQRLEWVEDESNADER 201

Query: 199 FER 201
           + R
Sbjct: 202 YPR 204


>gi|193212239|ref|YP_001998192.1| tRNA(Ile)-lysidine synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193085716|gb|ACF10992.1| tRNA(Ile)-lysidine synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 334

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 83/201 (41%), Gaps = 33/201 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR--ETAKDEVRYVSDV 76
           +LVAVSGG DSM LL  L +         +    + V HC   LR  E+  DE  +V   
Sbjct: 24  VLVAVSGGPDSMALLHLLVAAAP------VLHLRLGVAHCNFGLRGEESDGDEA-FVRYE 76

Query: 77  CSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           C+ L +   V          +WK S  +T     AR  RY    E  +     LI T H 
Sbjct: 77  CAGLGLDFHVRRFDTKAVATTWKKSIEET-----ARLLRYDFFEELCREKGYELIATGHH 131

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             D  ET+     R  A  G+    M    L        RP +   R++I S+L +++I+
Sbjct: 132 SGDNAETMLFNLFRGTAASGLRGIRMRQGRLI-------RPLIPFSRQEIVSYLDEKSIA 184

Query: 188 WCEDPSNTDDRFERVRVRRFV 208
           W  D +N     +R  +R  V
Sbjct: 185 WRTDRTNAGLEHDRNYIRNRV 205


>gi|120406326|ref|YP_956155.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|119959144|gb|ABM16149.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 323

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++ AHT DDQ ETV +   R    +   ++GM  +       W  RP L  RR   R   
Sbjct: 117 VLLAHTLDDQAETVLLGLGRGSGARS--IAGMRPSD----PPWC-RPLLGVRRAVTRLAC 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  ++  +DP NTD RF RVR+R  V
Sbjct: 170 AELGLTPWQDPHNTDRRFTRVRLRTEV 196


>gi|126464914|ref|YP_001040023.1| PP-loop domain-containing protein [Staphylothermus marinus F1]
 gi|126013737|gb|ABN69115.1| PP-loop domain protein [Staphylothermus marinus F1]
          Length = 330

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 25/136 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSDV 76
           HI+VAVSGG DS+ LL  L++ LS R  G  K +A+ +D  +      T KD +R V++ 
Sbjct: 49  HIVVAVSGGKDSLSLLHYLYN-LSKRVPG-WKITALLIDEGIGGYRDITKKDFLRVVNE- 105

Query: 77  CSRLRIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTINATL 121
              L + + + S+K     T   ++   RE              R  L+++ A+ +  T+
Sbjct: 106 ---LGVNYKIASFKEYLGYTLDEIVRIGREKGLPYLPCSYCGVFRRYLLNKVARDLGGTV 162

Query: 122 IMTAHTFDDQLETVYM 137
           + TAH  DD ++T  M
Sbjct: 163 LATAHNLDDVIQTYVM 178


>gi|11499188|ref|NP_070424.1| hypothetical protein AF1595 [Archaeoglobus fulgidus DSM 4304]
 gi|2648962|gb|AAB89651.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 304

 Score = 45.1 bits (105), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 12/126 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A+SGG DS+ L   L+ +   RS   ++F AI++D  +       V     V  +L 
Sbjct: 51  IAIALSGGKDSVTLAFVLNKLYGFRS--DLEFFAITIDEGIAGYRPPTVEIARKVTEQLG 108

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA----------RYALISEHAKTINATLIMTAHTFDDQ 131
           + H VVS++ +   T      R            R  L++  A+ + AT + T H  DD+
Sbjct: 109 MEHLVVSFEENFGMTLDEMVKRGDKKPCTYCGVFRKYLLNRTAREMGATKLATGHNLDDE 168

Query: 132 LETVYM 137
            +T+ +
Sbjct: 169 TQTILL 174


>gi|219125079|ref|XP_002182816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405610|gb|EEC45552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 770

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           I++++SGG DSM +  AL  +   RS G  ++ +A+ +D+  R  +K E  YV   C +L
Sbjct: 417 IIISLSGGVDSMVIASALAHL--RRSLGYNLQLTAVHIDYANRPDSKAEASYVERYCQQL 474

Query: 81  RIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            I + V   +  ++  T      +  R    SE  + +    +M  H   D  E V    
Sbjct: 475 EIEYHVRRIEEVTRGVTNRDEYEKRTREQARSEVDEEVG---VMLGHHRGDLRENVL--- 528

Query: 140 QRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRR 174
               A KG G   LSGM    + D  + I RP LR  +
Sbjct: 529 --SNAHKGSGPLDLSGMTAVSIND-GVIIHRPLLRLEK 563


>gi|171185906|ref|YP_001794825.1| PP-loop domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935118|gb|ACB40379.1| PP-loop domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 329

 Score = 45.1 bits (105), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 25/144 (17%)

Query: 16  LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDE 69
           L+ P  ++ VAVSGG DS+ LL  L   L       +K  A +++      C    AK +
Sbjct: 45  LIEPGDYVAVAVSGGKDSLVLLYMLGRFLQRGLLKDVKMEAFTINEGHPYSCFYRMAKRD 104

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------- 121
             YV ++  +L I ++V S+K+    T +  A   ++      H  TI+  L        
Sbjct: 105 --YVRELAGKLGIEYNVYSFKDIFGVTAMELAENLSKRGH-EVHMCTIDGVLRRRVMNII 161

Query: 122 --------IMTAHTFDDQLETVYM 137
                   I TAH  DD+ +TV M
Sbjct: 162 GSRRGWTKIATAHNLDDEAQTVLM 185


>gi|297526784|ref|YP_003668808.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255700|gb|ADI31909.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 331

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 25/136 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSDV 76
           HI+VAVSGG DS+ LL  L++ LS R  G  + +A+ +D  +R     T KD +R V++ 
Sbjct: 50  HIVVAVSGGKDSLSLLHYLYN-LSKRVPG-WRITALLIDEGIRGYRDITKKDFLRVVNE- 106

Query: 77  CSRLRIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTINATL 121
              L + + + S++     T   ++   RE              R  L+++ A+ +  T+
Sbjct: 107 ---LGVDYKIASFEEYFGYTLDEIVRIGREKGLPYLPCSYCGVFRRYLLNKVARELGGTV 163

Query: 122 IMTAHTFDDQLETVYM 137
           + TAH  DD ++T  M
Sbjct: 164 LATAHNLDDVVQTYVM 179


>gi|307729282|ref|YP_003906506.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1003]
 gi|307583817|gb|ADN57215.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1003]
          Length = 482

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 168/466 (36%), Gaps = 77/466 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E+V     +L   A + VA SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LEAVGVAFAALPVHARVAVAFSGGVDSGVLLDA-----AVRVAGASRCMALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREARYALISEHAKTINATLIM 123
           A   + +  +  +R R               G+   AAAR+ARY  +     T     + 
Sbjct: 69  ADAWLTHC-EAFARERGVEFAARHVEVLRDAGISVEAAARDARYQALDALCATHGIQWLW 127

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLL 182
            A   DDQ ETV +  Q        GL+ M           +  RP L   R  I  +  
Sbjct: 128 LAQHADDQAETVLL--QLLRGAGLAGLAAMATEFAPAGAAAVRVRPLLHLLRAQIEQYAN 185

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPK 240
            R++ W +D SN D R+ R  +R  V      AL +    F+D   R   + A A  +  
Sbjct: 186 ARHLRWIDDESNADTRYARNALRHEVTP----ALAIHFPGFRDALARTASHAASAQRLLD 241

Query: 241 YL--------------TVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
            L               +   ++IA+  +  LN    LL Y +R+   +      L    
Sbjct: 242 ELARIDLELASRDEGRALSHHALIALDDERALN----LLRYWMRLQGFVPASSARLGDAL 297

Query: 286 SMERVMLFLKSGKRGCVS-IGRVVIDRRANFLW-----------ITRAVRNLPTLILYPE 333
              R +     G R  V   G+ +   R    W              A R +  L    E
Sbjct: 298 RQLREVGTSGDGHRLRVDHAGQALRCYRGLVYWEAGDSRDPADETALAAREVSELAWSGE 357

Query: 334 ET---TVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL 390
            T     W G + F+ L  S         R A   + +P  + QRAL S  S+ GG+ + 
Sbjct: 358 ATWRVPQWRGTFVFEALDAS-------HARTAASEAAVPVSVLQRALLSARSRRGGERMR 410

Query: 391 ---APFSRFMT-------------KFDLPVAYAFSISFGKVFIPRL 420
              AP +R  T             K D+P+ Y   I    +F+P L
Sbjct: 411 TGDAPGARSRTLKNLFQERGIAAWKRDVPLLY---IGDELLFVPLL 453


>gi|257075864|ref|ZP_05570225.1| ATPase of the PP-loop superamily [Ferroplasma acidarmanus fer1]
          Length = 311

 Score = 44.7 bits (104), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS   L  LH +LS+R    ++ +A +VD  +       +     +C  L 
Sbjct: 51  ISVAISGGKDSSATLYLLHKILSERR--NLELTAFTVDEGIEGYRSTGLEKARKLCENLG 108

Query: 82  IAHSVVSWKNS 92
           I H+V+S+K +
Sbjct: 109 IEHNVISYKEN 119


>gi|154504409|ref|ZP_02041147.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149]
 gi|153795338|gb|EDN77758.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149]
          Length = 245

 Score = 44.7 bits (104), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 18/200 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL ALH +   + F   K + SAI+VD    +    ++  +  +C 
Sbjct: 25  HIAVGISGGKDSLTLLYALHGL---KRFYPKKFELSAITVDLGFEDF---DLSPIQALCQ 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L I + + S        + + ++   +   + R   +++  K +    I  AH  DD +
Sbjct: 79  ELNIPYRIESSDIYEILFHVRKESNPCSLCAKMRKGALNQAIKEMGCNKIAYAHHKDDII 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   S    T L   +L + RP +    +D+  F  +  +   +  
Sbjct: 139 ETMLL----SLIFEGRFYSFSPKTYLDRTDLTVIRPMMFVDEKDVIGFKNKYQLPVVKSK 194

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D   +R  V+  +R ++
Sbjct: 195 CPVDGYTKRQYVKELLRQLN 214


>gi|268592643|ref|ZP_06126864.1| PP-loop family protein [Providencia rettgeri DSM 1131]
 gi|291311783|gb|EFE52236.1| PP-loop family protein [Providencia rettgeri DSM 1131]
          Length = 304

 Score = 44.7 bits (104), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 20/201 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  LL  L S+   +    I+FS I+V+   ++    E     Y+  +  
Sbjct: 37  IMVCLSGGKDSYTLLSILQSL---QKSAPIQFSLIAVNLDQKQPGFPEHILPAYLDKLGV 93

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 94  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 152

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F   ++      P N
Sbjct: 153 MFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAQAKDFPII--PCN 206

Query: 195 ---TDDRFERVRVRRFVRDID 212
              +    +R  ++  +RD D
Sbjct: 207 LCGSQPNLQRQVIKEMLRDWD 227


>gi|260587706|ref|ZP_05853619.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|331084003|ref|ZP_08333110.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541971|gb|EEX22540.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|330402365|gb|EGG81935.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 18/198 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           I + VSGG DS+ +L ALH ++  R + K  +  AI+VD   ++   D+++    +C  L
Sbjct: 26  IAIGVSGGKDSLTMLYALHGLM--RFYPKHFQLEAITVDLGHKDFCADKIQR---LCDSL 80

Query: 81  RIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            I  ++V        ++  K Q      A+  R   ++  AK +    +  AH  DD +E
Sbjct: 81  EIPFTLVKTDIAPIIFEERKEQNPCSLCAK-MRKGALNNAAKDLGCNKVAYAHHKDDVVE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +        +G   +    T L  ++L + RP L     D+  F  +  +   + P 
Sbjct: 140 TMLL----SLIYEGRFHTFSPKTYLDRMDLTVIRPLLYVNEADVIGFKNKYQLDIEKSPC 195

Query: 194 NTDDRFERVRVRRFVRDI 211
             D   +R   +  ++ +
Sbjct: 196 PVDGYTKRQYAKELLKTL 213


>gi|114320993|ref|YP_742676.1| tRNA(Ile)-lysidine synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311407|sp|Q0A7K1|TILS_ALHEH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|114227387|gb|ABI57186.1| tRNA(Ile)-lysidine synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 445

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  + ++ + R   ++   A+ + H L+  A     +     + L + 
Sbjct: 27  VAYSGGLDSTVLLHLMAALSAAR---ELPLRAVHIHHGLQPQADAWAEHCRQQAAALGVD 83

Query: 84  HSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
             V+  +  +    GL AAAR+ARYA ++ H ++  A  ++TAH  DDQ ETV +   R 
Sbjct: 84  CLVLPVEVRRDSGEGLEAAARQARYAALASHLQSGEA--LLTAHHADDQAETVLLHLLRG 141

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
              +  GL+GM           + RP L   RE +R++     + W EDPSN 
Sbjct: 142 SGPR--GLAGMRAQRPLGRGR-LLRPLLPWPRERLRAYGDTHALCWVEDPSNA 191


>gi|298674631|ref|YP_003726381.1| PP-loop domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298287619|gb|ADI73585.1| PP-loop domain protein [Methanohalobium evestigatum Z-7303]
          Length = 314

 Score = 44.7 bits (104), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A+SGG DS  LL  L+ +  DR    I   AI++D  +     D ++   ++   L 
Sbjct: 62  IAIALSGGKDSTVLLYILNKIFGDRP--DINLVAITIDEGISGYRLDTIQKSKELTDNLG 119

Query: 82  IAHSVVSWKNSKPQT-----------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           I H + S+ +    T           G  +     R  L+++ AK   AT +   H  DD
Sbjct: 120 IKHVIRSFADEYGMTLDELTQKQRSYGACSYCGVFRKKLLNKTAKEEGATRLAIGHNLDD 179

Query: 131 QLETVYM 137
           + +T+ +
Sbjct: 180 EAQTILL 186


>gi|288572799|ref|ZP_06391156.1| PP-loop domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568540|gb|EFC90097.1| PP-loop domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 244

 Score = 44.7 bits (104), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 13/124 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCS 78
           H++V +SGG DS+ LL+AL  +   R +  +KF  SA SVD         +V  +  +C 
Sbjct: 29  HVVVGLSGGKDSVFLLVALSQI---RRWSPVKFDLSACSVDI---SGGNWDVSPMEKLCY 82

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAA-----REARYALISEHAKTINATLIMTAHTFDDQLE 133
            L I + VV     +        +        R  +++ +AK +    +   H  DD +E
Sbjct: 83  ELEIPYKVVPHPIEEIIRIREERSPCSFCANMRRGILNSYAKEMGGNTVALGHNLDDAVE 142

Query: 134 TVYM 137
           T  M
Sbjct: 143 TALM 146


>gi|269102678|ref|ZP_06155375.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162576|gb|EEZ41072.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 309

 Score = 44.3 bits (103), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 73/174 (41%), Gaps = 31/174 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----------DHCLRETAKDEVR 71
           I+V +SGG DS  +L  L S+   +    +KF  I+V          DH L E       
Sbjct: 42  IMVCLSGGKDSYAMLDILRSL---QRSAPVKFELIAVNLDQKQPGFPDHILPE------- 91

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   AK I AT I   H 
Sbjct: 92  YLDTLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTAKEIGATKIALGHH 150

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSF 180
            DD LET+++         G  L  M   ++ D    +  RP   CR +DI  F
Sbjct: 151 RDDMLETLFLN-----MFYGGKLKSMPPKLVSDNGEHVVIRPLAYCREKDIERF 199


>gi|226356848|ref|YP_002786588.1| hypothetical protein Deide_18460 [Deinococcus deserti VCD115]
 gi|226318838|gb|ACO46834.1| Conserved hypothetical protein, precursor [Deinococcus deserti
           VCD115]
          Length = 300

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 9/122 (7%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSR 79
           ++V +SGG DS  LL + LH  L  ++  + +  A+++D       +D + RY++ +  R
Sbjct: 45  VMVCLSGGKDSYTLLDVLLH--LQRKAPIRFEIVAVNLDQGQPGFPQDVLPRYLTGMGVR 102

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I     +SVV  K  + +T     +R  R  ++  HA+ I AT I   H  DD LET+
Sbjct: 103 HDILTQDTYSVVKEKTPEGKTTCALCSR-LRRGILYAHARRIGATKIALGHHRDDILETM 161

Query: 136 YM 137
           +M
Sbjct: 162 FM 163


>gi|48477224|ref|YP_022930.1| ATPase of the PP-loop superamily [Picrophilus torridus DSM 9790]
 gi|48429872|gb|AAT42737.1| ATPases of the PP-loop superamily [Picrophilus torridus DSM 9790]
          Length = 312

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 19/143 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+  L  L+ +LSDR   KIK  A +VD  +       +   + +C  L 
Sbjct: 51  ISVAISGGKDSLVTLYVLNKILSDRRNLKIK--AFTVDEGISGYRPSGIEKAARLCKSLG 108

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ---LETVYMR 138
           I H ++S+K+            E  Y L  +   +I+ T I  +H    +   +  + M 
Sbjct: 109 IDHEIISFKH------------EFGYTL--DEIMSIDNTRISCSHCGPMRRSLMNKISMY 154

Query: 139 SQRDYAEKGMGLSGMCDTILYDL 161
           ++ DY   G+ L     +IL ++
Sbjct: 155 NKADYLALGINLDDYAQSILMNV 177


>gi|160935943|ref|ZP_02083317.1| hypothetical protein CLOBOL_00838 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441185|gb|EDP18902.1| hypothetical protein CLOBOL_00838 [Clostridium bolteae ATCC
           BAA-613]
          Length = 479

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 94/239 (39%), Gaps = 49/239 (20%)

Query: 6   IESVRFFVRSLVYPAHIL-------VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           +E +   VR  +   H+L        AVSGG+DS+ LL  L +    R    I   A+ V
Sbjct: 1   MEGLEHRVRETMEQYHMLEPGDRVIAAVSGGADSVCLLALLCAWREPRG---ISIRALHV 57

Query: 59  DHCLR-ETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGL--MAAAREARYALISEH 113
            H LR E A  +  +V  +C  L +   +  V  +    + G+    A R  RY  + + 
Sbjct: 58  HHGLRGEEADRDADFVRSLCEGLHVPCHILKVDVRGLAAEKGMSEEEAGRFLRYEALEKE 117

Query: 114 A---------------------------KTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146
           A                            +++   I  AH   DQ+ET+     R     
Sbjct: 118 ALDWEGEDRASGARSGQDGDWAHGGLAGSSLSPVKIAVAHHSGDQVETILHNLFR----- 172

Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           G GL GM   I+Y     I RP L   R+ I  +L   ++ + +D +N    + R R+R
Sbjct: 173 GSGLFGM-KGIVYRRGR-IIRPLLDVDRDCILKWLADHDLPYVQDSTNDTLHYTRNRIR 229


>gi|295101039|emb|CBK98584.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Faecalibacterium prausnitzii L2-6]
          Length = 263

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 83/219 (37%), Gaps = 38/219 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFG--------KIKFSAISVDHCLRETAKDEVRYV 73
           +LV VSGG DS+ L I L  +     F           +F    VD+   E         
Sbjct: 30  VLVGVSGGKDSVALTIGLARLRQYLGFPFEVVAVTLDPQFGGKPVDYSALEALFRRYDVP 89

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC  L I   V  ++N K    L A  R  R AL +  A+ +    +   H  DD +E
Sbjct: 90  YEVCRTL-IGPIVFDYRNEKNPCSLCAKMR--RGALHTA-AEELGCNKVALGHHLDDAIE 145

Query: 134 TVYMRSQRDYAEKGMGLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNI----S 187
           T YM   R+      G  G     T L D  L + RP L    +++R  + +       S
Sbjct: 146 TFYMNLWRE------GRIGCFSPVTELSDRGLTLIRPLLLATEQEVRCAVKEEGFPIVKS 199

Query: 188 WC--------EDPSNTDDRF--ERVRVRRFVRDIDLHAL 216
            C        ED  N    F  ER R  R  R   LHAL
Sbjct: 200 RCPADGVTTREDTKN----FVRERCRTDRAFRQKTLHAL 234


>gi|11467837|ref|NP_050888.1| hypothetical chloroplast RF62 [Nephroselmis olivacea]
 gi|11467908|ref|NP_050959.1| hypothetical chloroplast RF62 [Nephroselmis olivacea]
 gi|61216751|sp|Q9T390|TILS_NEPOL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|5880766|gb|AAD54859.1|AF137379_82 hypothetical chloroplast RF62 [Nephroselmis olivacea]
 gi|5880837|gb|AAD54930.1|AF137379_153 hypothetical chloroplast RF62 [Nephroselmis olivacea]
          Length = 367

 Score = 44.3 bits (103), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 17/215 (7%)

Query: 2   FLSPIESVRFF-----VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           +LS  E +R F     ++ LV P+  +L++ SGG DS+ LL  L  + ++ ++   +   
Sbjct: 33  YLSMREILREFEEACLLQGLVSPSTRLLISCSGGQDSVTLLFLLCQLQTNWTW---RLGV 89

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
           +  +H  R  + +    ++ +C    ++    S+  S  +       R  R  ++   + 
Sbjct: 90  VYCNHMWRYGSIETPAKLARICLLFGVS---CSFSVSGSRLQKEEEGRSWRLRVLCRMSS 146

Query: 116 TINATLIMTAHTFDDQLETVY---MRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFL 170
             +   I T HT  D++ET+    +R       + +      DT +    +++ I RP L
Sbjct: 147 IHSWFYISTGHTASDRIETLLSNVLRGSSSSGMRSINWYTSLDTQVGHRRISIPIIRPLL 206

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
              R ++R++  +  +  C DPSN D R  R R+R
Sbjct: 207 GISRLELRNYANRWKLPLCYDPSNQDQRIRRNRIR 241


>gi|237796737|ref|YP_002864289.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657]
 gi|229260662|gb|ACQ51695.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657]
          Length = 249

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76
           I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L    +      +   +  V
Sbjct: 32  IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLDMDLEPLKIFCKKNSIDLV 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +  IA+ V + +  K    L +  R+     +S   K+I AT +   H  DD +ET++
Sbjct: 91  IEKTNIANVVFNERKEKNPCSLCSKLRKGCLIRVS---KSIGATKVALGHNCDDVIETLF 147

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   +    K    S   D    D  + I RP +  R + I+  + + N+   + P   D
Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKDMVKKYNLPVVKSPCPED 203

Query: 197 DRFERVRVRRFV 208
            +  R  ++  +
Sbjct: 204 KKTTREEIKNLM 215


>gi|269216709|ref|ZP_06160563.1| cell cycle protein [Slackia exigua ATCC 700122]
 gi|269129854|gb|EEZ60937.1| cell cycle protein [Slackia exigua ATCC 700122]
          Length = 369

 Score = 44.3 bits (103), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 41/215 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKF-SAISVDHCLRETAKD-EVRYVSDVCS 78
           +++ VSGGSDS     AL  + +D R+ G + F S + V+H LR  A D +  +V  +  
Sbjct: 34  VVLMVSGGSDS----TALAYIGADLRNRGALGFISMLHVNHKLRGEASDADAAFVESLAK 89

Query: 79  RL-------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI----NATLIMTAHT 127
            L        I    +  +    ++        A    +    + +    +A ++ TAHT
Sbjct: 90  ALDIPLFACEIDMPALMREGGNMESVARRERYAAARDAVESTCRHLGAPADAGVVFTAHT 149

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGM--CDTILYDLNLWISRPFLRCRREDIRSFLLQ-- 183
            DD+ E  YMRS       G G  G+       +   + + RP L   R+D+RS++    
Sbjct: 150 ADDRAENFYMRSI-----VGTGPGGLRAMKHASFVQGVDVRRPLLELSRDDLRSYIESLP 204

Query: 184 --------RNISWCEDPSNTD-DRFERVRVRRFVR 209
                       W ED +N D DRF     R FVR
Sbjct: 205 TDRVATDAAGARWREDATNADTDRF-----RAFVR 234


>gi|325263925|ref|ZP_08130658.1| ExsB family protein [Clostridium sp. D5]
 gi|324030963|gb|EGB92245.1| ExsB family protein [Clostridium sp. D5]
          Length = 244

 Score = 44.3 bits (103), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 16/199 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           HI V +SGG DS+ LL ALH +   R + K  + SAI+V+         ++  +  +C  
Sbjct: 25  HIAVGISGGKDSLTLLYALHGL--KRFYPKHFELSAITVNLGFENF---DLSPIQALCKE 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L + + +V  +      + + +T   +   + R   +++  K +    +  AH  DD +E
Sbjct: 80  LEVPYRIVDSEIYHILFDVRKETNPCSLCAKMRKGALNDAIKEMGCNKVAYAHHKDDIIE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +        +G   S    T L  ++L + RP +     D+  F  + N+       
Sbjct: 140 TMLL----SLIFEGRFHSFSPKTYLDRMDLTVIRPIMFIDEADVIGFKNKYNLPVVGSKC 195

Query: 194 NTDDRFERVRVRRFVRDID 212
             D   +R   +  VR ++
Sbjct: 196 PVDGYTKRQYAKELVRQLN 214


>gi|325282320|ref|YP_004254861.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           proteolyticus MRP]
 gi|324314129|gb|ADY25244.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           proteolyticus MRP]
          Length = 292

 Score = 44.3 bits (103), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 9/122 (7%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSR 79
           I+V +SGG DS  LL + LH  L  R+  + +  A+++D       KD + RY+S++   
Sbjct: 37  IMVCLSGGKDSYTLLDVLLH--LQKRAPVRFEVVAVNLDQGQPGFPKDVLPRYLSELGVP 94

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I     +SVV  K  + +T     +R  R  ++  HA+ + AT I   H  DD LET+
Sbjct: 95  HDILTEDTYSVVKEKIPEGKTTCSLCSR-LRRGILYAHARRLGATKIALGHHRDDILETL 153

Query: 136 YM 137
           +M
Sbjct: 154 FM 155


>gi|15827015|ref|NP_301278.1| hypothetical protein ML0213 [Mycobacterium leprae TN]
 gi|221229493|ref|YP_002502909.1| hypothetical protein MLBr_00213 [Mycobacterium leprae Br4923]
 gi|6137303|sp|O69538|TILS_MYCLE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3097231|emb|CAA18805.1| hypothetical protein MLCB2548.18c [Mycobacterium leprae]
 gi|13092562|emb|CAC29721.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932600|emb|CAR70306.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 323

 Score = 44.3 bits (103), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 29/189 (15%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-------ETAKDEVRYVSDV 76
           VA+SGGSDS+ L      + S  +F         VDH L+       ETA+ +   +S  
Sbjct: 30  VALSGGSDSLALTAVAAQLRSTTAF--------IVDHGLQSDSAAVAETARKQA--ISLG 79

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C   ++    +      P+ GL AAAR ARYA++  +        ++ AHT DDQ ETV 
Sbjct: 80  CVDAQVLCVQID-PPFGPKGGLEAAARAARYAVLGANRNGP----VLLAHTLDDQAETVL 134

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G G   +     +D   W  RP L  RR   R+   +  ++  +DP NTD
Sbjct: 135 LGLGR-----GSGARSIAGMRPHDPP-WC-RPLLGVRRSVPRAACHELGLNAWQDPHNTD 187

Query: 197 DRFERVRVR 205
            R+ R R+R
Sbjct: 188 CRYTRTRLR 196


>gi|159471209|ref|XP_001693749.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283252|gb|EDP09003.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 329

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 8/188 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS+ LL  L  +    S+ ++    +  DH  R  +     +V ++ ++ R
Sbjct: 24  VLVAVSGGQDSVCLLQLLADLRHLYSWRRL--GVVHCDHRWRTDSAANAAFVVELATQ-R 80

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +    +  ++   +     +ARE RY + S  A       ++TAHT  D+  T+ +   R
Sbjct: 81  LG---LEAEDVHVEARCERSAREWRYHVFSRVAAECGYGAVVTAHTSTDR-RTMLLNLLR 136

Query: 142 DYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                G+  LS           + + RP L+  RE+  +F+ Q  +    D +N  +   
Sbjct: 137 GAGPSGLVALSRNRPLPPPPGPVRLVRPLLQFAREETLAFVQQAGLPHFHDSTNDHNEHR 196

Query: 201 RVRVRRFV 208
           R R+R  V
Sbjct: 197 RNRLRNEV 204


>gi|116074359|ref|ZP_01471621.1| hypothetical protein RS9916_37952 [Synechococcus sp. RS9916]
 gi|116069664|gb|EAU75416.1| hypothetical protein RS9916_37952 [Synechococcus sp. RS9916]
          Length = 342

 Score = 44.3 bits (103), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 17/203 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RL 80
           +L+AVSGG DSM L   L          ++    + + H             S++ +  L
Sbjct: 37  LLLAVSGGQDSMALTALL------LGLSRLHHWELHLWHGDHSWHPGSAAIASELQAWSL 90

Query: 81  RIAHSVVSWKNSKPQ-TG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
                +   +N+K + TG   A AR  RYA ++  A  + +  ++  HT  D+ ET+ ++
Sbjct: 91  GQGLPITVDRNAKNEATGRTEAEARRWRYAQLATCATALGSR-VVCGHTATDKAETLLLQ 149

Query: 139 SQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     G+G   +    L D      + + RP L   R+D  +     N+    DPSN
Sbjct: 150 LTRGTDLAGLG--SLRRQRLLDAEQHPAVHLVRPLLGFNRDDTAAICRDLNLPLWLDPSN 207

Query: 195 TDDRFERVRVRRFVRDIDLHALY 217
           T+ RF R R+R+ V  + L+ LY
Sbjct: 208 TNLRFSRNRIRQEVMPV-LNDLY 229


>gi|330508540|ref|YP_004384968.1| hypothetical protein MCON_2761 [Methanosaeta concilii GP-6]
 gi|328929348|gb|AEB69150.1| conserved hypothetical protein TIGR00269 [Methanosaeta concilii
           GP-6]
          Length = 308

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 13/127 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I VAVSGG DS  LL AL  VL+++   +++  A++VD  +     D +     +  ++
Sbjct: 49  RIAVAVSGGKDSTALLFALSRVLAEK---EVEMVALTVDEGIAGYRDDTIVAAKRIARQM 105

Query: 81  RIAHSVVSWKNSKPQT--GLMAAAREA--------RYALISEHAKTINATLIMTAHTFDD 130
            +   ++S++     +   ++  A  A        R   ++  AK++  T + T H  DD
Sbjct: 106 GVEQVIISFQEEYGWSLDEMVVGAEVAPCTYCGVFRKNALNCAAKSLGVTKLATGHNQDD 165

Query: 131 QLETVYM 137
           + ++V M
Sbjct: 166 EAQSVMM 172


>gi|188996043|ref|YP_001930294.1| tRNA(Ile)-lysidine synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931110|gb|ACD65740.1| tRNA(Ile)-lysidine synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 457

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEV---RYVSDVC 77
           IL+A SGG DS+ L   L       +  KI+ + +  +H LR E+ +D+    ++ S + 
Sbjct: 24  ILIAFSGGPDSLVLTNLLLKFQKTLNIAKIQLAHL--NHTLRKESDQDQEFCEKFASSLG 81

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++ +  + V     + +  +  A R  RY   +E  +  N   I T H   D  E++ +
Sbjct: 82  LKIHVKKADVKKVAREQKISVEEAGRLERYKFFNEILQKENLNKIATGHHLSDLTESIVL 141

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              +       G     + I+        RP     +E+I  +  +  + +  D SN   
Sbjct: 142 WFIQGNKRGLKGFRPKENNII--------RPLYLITKEEIEEYCQKNGLEYLIDQSNFSR 193

Query: 198 RFERVRVR 205
           ++ R +VR
Sbjct: 194 KYLRNQVR 201


>gi|15805507|ref|NP_294203.1| C32 tRNA thiolase [Deinococcus radiodurans R1]
 gi|81551821|sp|Q9RX35|TTCA_DEIRA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|6458168|gb|AAF10060.1|AE001907_6 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 299

 Score = 43.9 bits (102), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 9/122 (7%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSR 79
           ++V +SGG DS  LL + LH  L  ++    +  A+++D       KD + RY++ +  R
Sbjct: 44  VMVCLSGGKDSYTLLDVLLH--LQKKAPIDFEVVAVNLDQGQPGFPKDVLPRYLTALGVR 101

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I     +SVV  K  + +T     +R  R  ++ +HA+ I AT I   H  +D LET+
Sbjct: 102 HDILTEDTYSVVKEKTPEGKTTCSLCSR-LRRGILYQHAREIGATKIALGHHREDILETL 160

Query: 136 YM 137
           +M
Sbjct: 161 FM 162


>gi|331083661|ref|ZP_08332772.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403872|gb|EGG83424.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 179

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 23/166 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVC 77
           +H++V +SGG+DS+ LL  L      + F   +  A+ V+H +R  E  +DE  +   VC
Sbjct: 21  SHVIVGLSGGADSVCLLKLLKEYKKQQEF---QLYAVHVNHHIRGEEAVRDE-EFSKAVC 76

Query: 78  SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT---LIMTAHTFDD 130
            +L +  +V  +       + +  L  A R  R     +  K I  +    I  AH  +D
Sbjct: 77  KKLEVPFTVFHYDVPQIAKEEKLSLEEAGRNVRREAFEKAMKNIKVSGRKRIALAHHEND 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMC---DTILYDLNLWISRPFLRCR 173
             ETV     R     G+G +  C   + +LY        PF+ C 
Sbjct: 137 NAETVLHNLMRGSGAAGLGGNTSCVRGEGLLYS-------PFVVCE 175


>gi|291522347|emb|CBK80640.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Coprococcus catus GD/7]
          Length = 248

 Score = 43.9 bits (102), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 16/198 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           I + VSGG DS+ +L AL  +   R + K  +  AI+V   L     D V+    +C+ L
Sbjct: 26  IAIGVSGGKDSLTMLYALKGL--QRFYPKHFELEAITVGLGLGNFNMDAVK---SLCNEL 80

Query: 81  RIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            I +++VS +      + + +    +   + R   ++  A  +    I   H  DD +ET
Sbjct: 81  NIPYTIVSTEIGPIIFDQRHEKNPCSLCAKMRKGALNNKALELGCNKIAYGHHRDDLVET 140

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + M        +G   +    T L    L + RP L     DI  F  ++N+   + P  
Sbjct: 141 MLM----SLIYEGHFYAFPPVTKLERTGLTVIRPLLYMTEPDIIGFARKQNLPVAKSPCP 196

Query: 195 TDDRFERVRVRRFVRDID 212
            +    R   +  +  I+
Sbjct: 197 ANGHTRREYTKNLMHQIN 214


>gi|225567970|ref|ZP_03776995.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM
           15053]
 gi|225163258|gb|EEG75877.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM
           15053]
          Length = 245

 Score = 43.9 bits (102), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 14/125 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           HI V +SGG DS+ LL ALH +   R F   K + SA++VD    E    +   V  +C 
Sbjct: 25  HIAVGISGGKDSLTLLYALHGL---RRFYPNKFELSAVTVDLGYSEC---DFTPVIKLCK 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + + +V           + ++   +   + R   +++  K +    +  AH  DD +
Sbjct: 79  ELGVPYRIVKTDIAHILFEERKESNPCSLCAKMRKGALNQAVKEMGCNKVAYAHHKDDII 138

Query: 133 ETVYM 137
           ET+ +
Sbjct: 139 ETMLL 143


>gi|313158186|gb|EFR57591.1| tRNA(Ile)-lysidine synthetase [Alistipes sp. HGB5]
          Length = 447

 Score = 43.9 bits (102), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 35/197 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSDVCS 78
           IL+ VSGG DSM +L    S+ +   +       + V HC   LR    DE   + +  +
Sbjct: 23  ILLTVSGGVDSMVML----SLFTRSGY------RVGVAHCNFQLRGAESDEDEVLVEEEA 72

Query: 79  RLRIAHSVVSWKNSKPQTG---------LMAAAREARYALISEHAKTINATLIMTAHTFD 129
           R       V + N + +T          +  AAR  RYA     ++    T++  AH  D
Sbjct: 73  R----KYGVEFYNKRFETAAEMERTGESMEMAARRLRYAWFDALSREHGYTVVAIAHHAD 128

Query: 130 DQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           D +ET ++   R    +G+ G+S     ++        RP +   R++I  + +   I +
Sbjct: 129 DSIETFFINLLRGTGLRGLTGISTQVGKVV--------RPLMFASRKEILEYAVANRIPF 180

Query: 189 CEDPSNTDDRFERVRVR 205
            ED SN   ++ R ++R
Sbjct: 181 REDSSNRSTKYLRNKIR 197


>gi|225849954|ref|YP_002730188.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1]
 gi|254789038|sp|C0QU23|TILS_PERMH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225646259|gb|ACO04445.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 30/196 (15%)

Query: 22  ILVAVSGGSDSMGLLIAL-----HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           ILVA SGG DS  L   L     H  +SD            ++H LR+ + ++ R+  D 
Sbjct: 22  ILVAFSGGIDSTVLTYLLIKFRDHLKISDIYLA-------HLNHSLRKESDEDQRFCEDF 74

Query: 77  CSR--LRIAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +  L I    V  K+   K +  +   ARE RY+   +  +  +   + T H   D +
Sbjct: 75  AKKYGLEIFTKKVDIKSLAEKEKKSIEQKAREERYSFFRKVMEERSINRLATGHHLSDLV 134

Query: 133 ETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           ET+   +++  R       G+ G            I RP     ++ I ++  ++ I + 
Sbjct: 135 ETMIMWFIQGNRK------GIKGFRPK-----ERDIIRPLYLINKDQIENYAREKGIEYR 183

Query: 190 EDPSNTDDRFERVRVR 205
            D +N +  F R R+R
Sbjct: 184 IDITNFETDFLRNRIR 199


>gi|256004136|ref|ZP_05429120.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
 gi|255991884|gb|EEU01982.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
          Length = 218

 Score = 43.9 bits (102), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 24/199 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I V VSGG DS+ LL+AL  +   ++F  +KF   AI++   + E     VR   ++C R
Sbjct: 8   IAVGVSGGKDSLTLLVALRQL---KNFLPVKFELKAITLTMGIGEVDLSPVR---ELCER 61

Query: 80  LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + ++++V       + ++  K +      A   R AL    AK +    +  AH  DD +
Sbjct: 62  IDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGAL-HNTAKRLGCNKVALAHHMDDVI 120

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +     Y  +    S +  T L    L++ RP +    + ++ F+   NI    +P
Sbjct: 121 ETFLL--SLFYEGRIHTFSPV--TYLDRKGLYLIRPLIYTEEKLVKQFVKANNIITVANP 176

Query: 193 SNTDDRFERVRVRRFVRDI 211
              +   +    R++++D+
Sbjct: 177 CPANGYTK----RQYIKDL 191


>gi|295115158|emb|CBL36005.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [butyrate-producing bacterium SM4/1]
          Length = 131

 Score = 43.9 bits (102), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R   +++ AK +    I  AH  DD ++T+ +        +G   S    T L  ++L++
Sbjct: 2   RKGALNQAAKNLGCNKIAYAHHRDDLIDTMLL----SLIYEGRFHSFSPKTYLDRMDLFV 57

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
            RPFL     DI  F  + ++  C++P   D + +R  V++ ++ I++ A  +K + F 
Sbjct: 58  IRPFLYIPEADIIGFKNRYSLPVCKNPCPVDGKTKREYVKQLIKTINMEASGVKDRLFH 116


>gi|21909546|ref|NP_663814.1| putative cell-cycle protein [Streptococcus pyogenes MGAS315]
 gi|21903726|gb|AAM78617.1| putative cell-cycle protein [Streptococcus pyogenes MGAS315]
          Length = 395

 Score = 43.5 bits (101), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 17/158 (10%)

Query: 50  KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AAREARY 107
           KI+     V+H  R  +  E  Y+     +  I   V +++      G+ +  AAR+ RY
Sbjct: 15  KIRIGIAHVNHKQRSESDSEEAYLKCWAKKHDIPIYVSNFE------GIFSEKAARDWRY 68

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           A         N + ++TAH  DDQ ET+ MR  R    +   LSG+     +  N  + R
Sbjct: 69  AFFKSIMLKNNYSALVTAHHSDDQAETILMRLIR--GSRLRHLSGIKSVQPF-ANGQLIR 125

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           PFL   ++D+        I   ED SN +  F R RVR
Sbjct: 126 PFLTFSKKDLPE------IFHFEDSSNRELSFLRNRVR 157


>gi|304437099|ref|ZP_07397062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370050|gb|EFM23712.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 474

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 17/190 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L A SGG+DS+ LL  L  +    + G  +      +H +R  A              R
Sbjct: 32  VLAACSGGTDSLVLLDILRDL---HAAGGPQIICAHYEHGIRGAASRADADAVAAYCAAR 88

Query: 82  IAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               ++   +        +  L  AAR  RY  +    +  +  +I  AH  DD  ETV 
Sbjct: 89  DIPCIIEAGDVPRYARTHKLSLETAARVCRYDFLHRLQEQEHCDVIALAHHADDLAETVL 148

Query: 137 MRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           MR  R     G G +G+     +D ++L   RP L   R +I  ++    +  C D +N 
Sbjct: 149 MRILR-----GTGPAGLAAMREWDGVHL---RPLLHTARTEIERYIRTHELHPCHDLTND 200

Query: 196 DDRFERVRVR 205
               +R R+R
Sbjct: 201 QQDAQRNRIR 210


>gi|268323619|emb|CBH37207.1| conserved hypothetical protein, PP-loop family [uncultured
           archaeon]
          Length = 302

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 26/153 (16%)

Query: 18  YPAHILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           Y   I VA+SGG DS  LL  L   +  DR+   ++F AI+VD  ++      +R    V
Sbjct: 48  YGDRIAVALSGGKDSSALLYMLKEKIFHDRN--DLEFFAIAVDEGIKGFRSATLRNAERV 105

Query: 77  CSRLRI-------AHS--------VVSWKNSKPQT--GLMAAAREARYALISEHAKTINA 119
              L I       AH         V    +  P T  G++      R  ++   AK + A
Sbjct: 106 AKELEIDCFIYSFAHEFGFTLDEIVAKGFDQAPCTFCGVL------RRRILDVKAKEMGA 159

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
           T ++TAH  DD+++T+ +   R   E+   L G
Sbjct: 160 TKVVTAHNLDDEVQTILINYLRGDIERLGRLQG 192


>gi|291277171|ref|YP_003516943.1| PP-loop family protein [Helicobacter mustelae 12198]
 gi|290964365|emb|CBG40215.1| Putative PP-loop family protein [Helicobacter mustelae 12198]
          Length = 254

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 19/178 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ L   L  +     F K +F A+++ + L E    +  Y++++C R  
Sbjct: 30  VLLGLSGGKDSILLACILERMQRHAPF-KFEFKAVTIHYGLGE----DFSYLTEICQRQG 84

Query: 82  IAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           I H +        +  K  +  +     +R  R AL ++ AK +    +  AH  DD  E
Sbjct: 85  IPHEIYHTSIAETIREKRREGSSYCSFCSRMRRGALYNK-AKELGYNKVAIAHHLDDAAE 143

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           + +M    + +     L  M      +  + + RP +  R      F+  +NI    D
Sbjct: 144 SFFMNLTYNGS-----LRSMPPIYRAENGIQVIRPLIHIRERQSIDFVQSQNIKTAPD 196


>gi|34558096|ref|NP_907911.1| hypothetical protein WS1792 [Wolinella succinogenes DSM 1740]
 gi|34483814|emb|CAE10811.1| conserved hypothetical protein-Predicted ATPase of the PP-loop
           superfamily implicated in cell cycle control [Wolinella
           succinogenes]
          Length = 248

 Score = 43.5 bits (101), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 24/203 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG DS+ L   L  +     F K +F A++VD+ + E    +  Y+ + C+   
Sbjct: 28  VLVGLSGGKDSLLLATLLARLARHAPF-KFEFKALTVDYGIGE----DFSYLQNYCAENG 82

Query: 82  IAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           I H V        +  K  +  +     +R  R AL S+  +     L +  H  DD  E
Sbjct: 83  IPHEVFKTNIMEVMQEKRRENSSYCSFCSRLRRGALYSKALEGGYNKLAL-GHHLDDAAE 141

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNIS--WCE 190
           + +M    + A + M        I    N LW+ RP +  R   +  F+L+ N+    C 
Sbjct: 142 SFFMNFSYNGAIRSM------PPIYRAYNGLWVIRPLIWLRERQMVDFVLKNNLQTPLCN 195

Query: 191 DPSNTDD-RFERVRVRRFVRDID 212
            P+  D   F R + ++ ++ ++
Sbjct: 196 CPAQHDKPPFAREQTKKMLQKME 218


>gi|22711981|ref|NP_683805.1| hypothetical chloroplast RF62 [Chaetosphaeridium globosum]
 gi|61216673|sp|Q8M9Y1|TILS_CHAGL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|22416985|gb|AAM96585.1| hypothetical chloroplast RF62 [Chaetosphaeridium globosum]
          Length = 341

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 41/217 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A+SGG DS+ LL  L S+L  +   K K S I  DH     +K++  ++  V  ++ 
Sbjct: 28  ILIAISGGQDSIVLLKIL-SILQIQ--WKWKLSIIYCDHQWNIYSKNQAFHLYKVSFQMG 84

Query: 82  IA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV---- 135
           I   H V      KP      +AR  RY++    A      +I+TAH+  D++ET     
Sbjct: 85  IPFYHGVTI----KPLRT-EKSARIWRYSVFQRIASISKFNVIVTAHSSTDRVETFLYNL 139

Query: 136 -------------------------YMRSQRDYAEKGMGLSGMCDTILY-DLN-LWISRP 168
                                    + RS++ +  K + L        Y D N L + RP
Sbjct: 140 FRGTGVQGLQSLTWKKNIQFEILPNFARSKKSFDLKILSLESKNGIQTYSDYNKLQLIRP 199

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
            L   R ++  F    N+    D +N +    R R+R
Sbjct: 200 LLNITRTELGKFCSNENLPLWPDLTNYNLSIIRNRIR 236


>gi|312136595|ref|YP_004003932.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311224314|gb|ADP77170.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 306

 Score = 43.5 bits (101), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L  VSGG DS+ +L  L ++L +R  G I+   ++VD  ++   +  +        RL 
Sbjct: 51  VLAGVSGGKDSVAMLDIL-NILHER--GIIELEVLTVDEGIKNYREKTLEIAKYHTKRLG 107

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           I H +V +K+           S  + G        R  + ++  K + A  I  AH  DD
Sbjct: 108 IPHHIVKFKDCFGITLDEIVSSNVERGPCTYCGVFRRWIFNKIGKKLEADKIAIAHNLDD 167

Query: 131 QLETVYM 137
           + E + M
Sbjct: 168 ETEAILM 174


>gi|111021375|ref|YP_704347.1| cell cycle protein [Rhodococcus jostii RHA1]
 gi|123144654|sp|Q0S8E7|TILS_RHOSR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|110820905|gb|ABG96189.1| possible cell cycle protein [Rhodococcus jostii RHA1]
          Length = 325

 Score = 43.5 bits (101), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G  + GM     YD   W  RP L  RR   R   
Sbjct: 119 VLLGHTLDDQAETVLLGLSR--GSGGRSIWGMS---AYD-TPW-GRPLLDVRRALTRQAC 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  +S  EDP N    F RVR+R  V
Sbjct: 172 AELGLSPHEDPHNASPDFVRVRLRTEV 198


>gi|167746732|ref|ZP_02418859.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662]
 gi|167653692|gb|EDR97821.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 28/204 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           I V +SGG DS+ +L AL  +   R F   K +   I+VD         ++  V  +C  
Sbjct: 26  IAVGISGGKDSLTMLYALAHL---RIFYPNKFEIHGITVDLGF---GNFDITQVEKLCEE 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L++ ++VV  +        + +T   +   + R   ++E  K +    +  AH  DD +E
Sbjct: 80  LKVPYTVVKTEIADVVFERRKETNPCSLCAKMRKGALNEKIKELGCNKVAYAHHKDDLVE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCD-----TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           T  M          M   G        T L  ++L + RP +     D+  F  + N+  
Sbjct: 140 TFLM---------SMLFEGRLHCFSPVTYLDRMDLKVIRPLMYMDEADVIGFKNKMNLPV 190

Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212
            + P   D   +R   +  ++ +D
Sbjct: 191 EKSPCPMDGYTKRQYAKETLKKLD 214


>gi|291533245|emb|CBL06358.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Megamonas hypermegale ART12/1]
          Length = 258

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 12/195 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ +  AL + L +         AI+++    +    E   +   C +L 
Sbjct: 28  ILIGLSGGKDSLFMAYAL-TELKNTLKKNFTLGAITINPMFTKDFSCEA--MQKFCDKLN 84

Query: 82  IA---HSVVSWKNSKPQTGLMAAAREA--RYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +    H V   +    Q    A    A  R   I+ +AK      I  AH  DD +ET +
Sbjct: 85  MPYHIHEVNIAETIANQDNKNACYSCAFFRRGAINGYAKEHGYNKIAYAHNHDDAVETFF 144

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M    +    G   + M  T L   ++ + RP L  R E+IR+ L       C  P   +
Sbjct: 145 M----NLFYSGQLKTFMPSTYLSRSDVTVIRPLLYFREEEIRNALSLHGQEPCAPPCPFN 200

Query: 197 DRFERVRVRRFVRDI 211
               R + +  + ++
Sbjct: 201 GNTMRQKAKNLIEEL 215


>gi|125974666|ref|YP_001038576.1| ATPase [Clostridium thermocellum ATCC 27405]
 gi|125714891|gb|ABN53383.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Clostridium thermocellum ATCC 27405]
 gi|316941791|gb|ADU75825.1| PP-loop domain protein [Clostridium thermocellum DSM 1313]
          Length = 237

 Score = 43.5 bits (101), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 24/199 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I V VSGG DS+ LL+AL  +   ++F  +KF   AI++   + E     VR   ++C R
Sbjct: 27  IAVGVSGGKDSLTLLVALRQL---KNFLPVKFELKAITLTMGIGEVDLSPVR---ELCER 80

Query: 80  LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + ++++V       + ++  K +      A   R AL    AK +    +  AH  DD +
Sbjct: 81  IDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGAL-HNTAKRLGCNKVALAHHMDDVI 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +     Y  +    S +  T L    L++ RP +    + ++ F+   NI    +P
Sbjct: 140 ETFLL--SLFYEGRIHTFSPV--TYLDRKGLYLIRPLIYTEEKLVKQFVKANNIITVANP 195

Query: 193 SNTDDRFERVRVRRFVRDI 211
              +   +    R++++D+
Sbjct: 196 CPANGYTK----RQYIKDL 210


>gi|315453138|ref|YP_004073408.1| putative PP-loop family protein [Helicobacter felis ATCC 49179]
 gi|315132190|emb|CBY82818.1| Putative PP-loop family protein [Helicobacter felis ATCC 49179]
          Length = 256

 Score = 43.5 bits (101), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 17/177 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV +SGG DS+ L   L  + +   F   +F AI+V + L E    ++ ++S +C+   
Sbjct: 29  ILVGLSGGKDSILLSCLLARMRAHAPFN-FEFKAITVHYGLNE----DLEWLSQLCTEQN 83

Query: 82  IAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I + +V         +  + Q+   +     R  ++  +A       +  AH  DD +E+
Sbjct: 84  IPYEIVRTNIAQTIREKRREQSSYCSFCSRMRRGVLYNYALENGYNKLALAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            +M    ++   G  L  M      +  L++ RP +  R      F+  +NI    D
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYKAENGLFVIRPLIHIRERQSIDFVKSQNIPTAPD 195


>gi|261343943|ref|ZP_05971588.1| PP-loop family protein [Providencia rustigianii DSM 4541]
 gi|282568332|gb|EFB73867.1| PP-loop family protein [Providencia rustigianii DSM 4541]
          Length = 304

 Score = 43.5 bits (101), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 20/201 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  LL  L S+   +    I FS ++V+   ++    E     Y+ ++  
Sbjct: 37  IMVCLSGGKDSYTLLAILQSL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLDELGV 93

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 94  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 152

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F   +       P N
Sbjct: 153 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEAKGFPII--PCN 206

Query: 195 ---TDDRFERVRVRRFVRDID 212
              +    +R  ++  +RD D
Sbjct: 207 LCGSQPNLQRQVIKEMLRDWD 227


>gi|119872527|ref|YP_930534.1| PP-loop domain-containing protein [Pyrobaculum islandicum DSM 4184]
 gi|119673935|gb|ABL88191.1| PP-loop domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 330

 Score = 43.5 bits (101), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 25/144 (17%)

Query: 16  LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDE 69
           L+ P  ++ VA+SGG DS+ LL  L   L       +K  A +++      C    +K E
Sbjct: 45  LIKPGDYVAVAISGGKDSLVLLYILGKFLQRNLLKDVKIEAFTINEGHPYSCFYRMSKRE 104

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------- 121
             YV ++ S+  I ++V  +K+    T +  A   ++      H  TI+  L        
Sbjct: 105 --YVKELASKFGIEYNVYHFKDIFGVTAIELAESLSKRGH-EVHMCTIDGVLRRRAMNII 161

Query: 122 --------IMTAHTFDDQLETVYM 137
                   I TAH  DD+ +TV M
Sbjct: 162 GRRRGWTKIATAHNLDDEAQTVLM 185


>gi|317471540|ref|ZP_07930890.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900988|gb|EFV22952.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA]
          Length = 244

 Score = 43.5 bits (101), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 28/204 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           I V +SGG DS+ +L AL  +   R F   K +   I+VD         ++  V  +C  
Sbjct: 26  IAVGISGGKDSLTMLYALAQL---RIFYPNKFEIHGITVDLGF---GNFDISQVEKLCEE 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L++ +++V  +        + +T   +   + R   ++E  K +    +  AH  DD +E
Sbjct: 80  LKVPYTIVKTEIADVVFERRKETNPCSLCAKMRKGALNEKIKELGCNKVAYAHHKDDLVE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCD-----TILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           T  M          M   G        T L  ++L + RP +     D+  F  + N+  
Sbjct: 140 TFLM---------SMLFEGRLHCFSPVTYLDRMDLKVIRPLMYMDEADVIGFKNKMNLPV 190

Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212
            + P   D   +R   +  ++ +D
Sbjct: 191 EKSPCPMDGYTKRQYAKETLKKLD 214


>gi|168182078|ref|ZP_02616742.1| PP-loop family protein [Clostridium botulinum Bf]
 gi|182674947|gb|EDT86908.1| PP-loop family protein [Clostridium botulinum Bf]
          Length = 249

 Score = 43.5 bits (101), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76
           I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L    +      +   +  V
Sbjct: 32  IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLDMDLEPLKIFCKKNSIDLV 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +  IA+ V + +  K    L +  R+     +S   K+I AT +   H  DD +ET++
Sbjct: 91  IEKTNIANVVFNERKEKNPCSLCSKLRKGCLIRVS---KSIGATKVALGHNCDDVIETLF 147

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   +    K    S   D    D  + I RP +  R + I+  + + N+   + P   D
Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKDMVKKYNLPVVKSPCPED 203

Query: 197 DRFERVRVRRFV 208
            +  R  ++  +
Sbjct: 204 KKTTREEMKNLM 215


>gi|320100819|ref|YP_004176411.1| PP-loop domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753171|gb|ADV64929.1| PP-loop domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 339

 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 17/132 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI+VAVSGG DSM LL  L  +   R     + +A+ VD  +    +  +R ++      
Sbjct: 50  HIIVAVSGGKDSMALLHFLRKL--SRKIPGWRITAVLVDEGISGYREKTIRNLAKYAEEN 107

Query: 81  RIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTINATLIMTA 125
            + + V S+K     T   ++   R               R  ++++ A+ +  T+I TA
Sbjct: 108 GVEYRVASFKEYIGATLDEIVEKGRSRGLPYLPCSYCGVFRRYVLNKAARELGGTVIATA 167

Query: 126 HTFDDQLETVYM 137
           H  DD ++T  M
Sbjct: 168 HNMDDVVQTFIM 179


>gi|260772837|ref|ZP_05881753.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio metschnikovii
           CIP 69.14]
 gi|260611976|gb|EEX37179.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio metschnikovii
           CIP 69.14]
          Length = 310

 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 15/170 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I FS I+V+   ++    E     Y+ ++  
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPITFSLIAVNLDQKQPGFPEHILPEYLQELGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H  DD +ET
Sbjct: 100 EYKIIEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRAAKELGATKIALGHHRDDIIET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           +++        KGM    + D   +     + RP   CR +DI  +   R
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDIIKYANHR 204


>gi|149925083|ref|ZP_01913396.1| PP-loop [Plesiocystis pacifica SIR-1]
 gi|149814054|gb|EDM73685.1| PP-loop [Plesiocystis pacifica SIR-1]
          Length = 287

 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 28/207 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVR-YVSDVC 77
           H++VAVSGG DS  LL  L  VL+ RS   I F  +A+ +D          +R ++ D  
Sbjct: 33  HVMVAVSGGKDSYTLLDLL--VLA-RSRAPIDFQITAVHLDQVQPGYDGSPLRTWLEDFR 89

Query: 78  SRLRIAHSVVSWKN-------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            R ++   +            + P     A     R  ++   A+ +    I   H  DD
Sbjct: 90  GRTKVDFEIAQEDTYTTVVDLTPPGKAYCAVCSRLRRGVLYNVAERLGCNKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+ M     YA K   +     T   D+   + RP + C   DI       + SW +
Sbjct: 150 ALETLLMNLF--YAGKLQAMPAKYTT--DDVRFEVIRPLIECAEADI-----IEHASWAK 200

Query: 191 DP------SNTDDRFERVRVRRFVRDI 211
            P        + D   R ++RR + D+
Sbjct: 201 YPILPCNLCGSQDNLRREKMRRLIDDM 227


>gi|258651090|ref|YP_003200246.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233]
 gi|258554315|gb|ACV77257.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233]
          Length = 334

 Score = 43.1 bits (100), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 31/201 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG+DS+ L + + +     + G+      +VDH L+  + D     +++  RL 
Sbjct: 27  VVVACSGGADSLALTLGVLA-----AAGRRPVIGATVDHGLQPGSADRAAGCAELMRRLG 81

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------------IMTAHTF 128
              + V         GL AAAR ARY  ++  A+   A               ++  HT 
Sbjct: 82  CVQTHVLTVTVTGDGGLEAAARRARYGALAALAQVAAAAGGAAGPAASAVRVPVLLGHTA 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSFLLQRN 185
           DDQ ETV +   R    +   ++GM          W     RP L   R    + + +  
Sbjct: 142 DDQAETVLLGLARGSGPR--SIAGM--------RPWRAPWGRPLLALTRAQTEAAVHEAG 191

Query: 186 ISWCEDPSNTDDRFERVRVRR 206
           +    DP N D  F RVR+RR
Sbjct: 192 LIPWSDPHNADPAFTRVRLRR 212


>gi|269957764|ref|YP_003327553.1| tRNA(Ile)-lysidine synthetase [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306445|gb|ACZ31995.1| tRNA(Ile)-lysidine synthetase [Xylanimonas cellulosilytica DSM
           15894]
          Length = 384

 Score = 43.1 bits (100), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 79/182 (43%), Gaps = 17/182 (9%)

Query: 22  ILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKF-----SAISVDHCLRETAKDEVRYVSD 75
           +LVA SGGSDS+ L  A+ H         + +      +A+ VDH L+  + D     + 
Sbjct: 33  VLVACSGGSDSLALAAAVAHESRRVGRSVRSRGFAVRAAAVVVDHGLQPGSDDVAAAAAQ 92

Query: 76  VCSRLRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            C  L +               TGL  AAR ARYA   + A +  A  ++  HT DDQ E
Sbjct: 93  QCRGLGLDPVVVRRVVVGHDGVTGLEDAARRARYAAFDDVAASTGAVAVLLGHTLDDQAE 152

Query: 134 TVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            V +   R    +   L+G+     +Y       RP L  RR  +R+    + + W +DP
Sbjct: 153 QVLLGLARGSGAR--TLAGIPPARGIY------RRPLLGLRRAQLRAACAAQGLDWWDDP 204

Query: 193 SN 194
           +N
Sbjct: 205 TN 206


>gi|148557402|ref|YP_001264984.1| tRNA(Ile)-lysidine synthetase [Sphingomonas wittichii RW1]
 gi|148502592|gb|ABQ70846.1| tRNA(Ile)-lysidine synthetase [Sphingomonas wittichii RW1]
          Length = 319

 Score = 43.1 bits (100), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 90/191 (47%), Gaps = 16/191 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + +AVSGG DSM +L    +    R        A +VDH LR  A  E   V+  C+ 
Sbjct: 30  ARLGLAVSGGPDSMAMLHLAAAACPGR------VEAATVDHGLRAEAAAEAALVARACAA 83

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L + H  +     +P   + AAAR ARYA ++  A       I TAH  DDQ ET+ MR 
Sbjct: 84  LGVPHMTLRV-TVEPTASIQAAARRARYAALAAWAAGQGLPAIATAHHADDQAETLLMRL 142

Query: 140 QRDYAEKGMGLSGMCDT-ILYDL-NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
            R     G GLSG+       D+  + + RP L  RR ++ + +    +   +DPSN D 
Sbjct: 143 AR-----GAGLSGLAGIRARRDIGGVLLVRPLLGWRRAELAAIVAA--VETVDDPSNADP 195

Query: 198 RFERVRVRRFV 208
           R +R   R  +
Sbjct: 196 RHDRTHARALL 206


>gi|229819197|ref|YP_002880723.1| tRNA(Ile)-lysidine synthetase [Beutenbergia cavernae DSM 12333]
 gi|259533670|sp|C5BYK3|TILS_BEUC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|229565110|gb|ACQ78961.1| tRNA(Ile)-lysidine synthetase [Beutenbergia cavernae DSM 12333]
          Length = 330

 Score = 43.1 bits (100), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
           + VDH L+  + +     +D C  L +   VV         G   AAR ARYA +   ++
Sbjct: 59  VVVDHALQAGSAEVAARAADQCRGLGLEARVVRVDVDIALGGPEGAARAARYAALEAASR 118

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                +++  HT DDQ ETV +R  R    +   L+GM            +RPFL   R 
Sbjct: 119 EAGDAVVLLGHTLDDQAETVLLRLARGSGAR--SLAGMPRR-----RGVFARPFLHLERA 171

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFER 201
            +R  +    ++  EDP+N  D   R
Sbjct: 172 RLREVVDAVGLTPWEDPTNAVDGPAR 197


>gi|322378687|ref|ZP_08053120.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS1]
 gi|322380182|ref|ZP_08054417.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS5]
 gi|321147397|gb|EFX42062.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS5]
 gi|321148904|gb|EFX43371.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS1]
          Length = 256

 Score = 43.1 bits (100), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 17/177 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ LL  L + +   +     F A +V + L+E    ++ ++SD+C    
Sbjct: 29  ILIGLSGGKDSI-LLSCLLARMQAHAPFNFTFQAATVHYGLKE----DLAWLSDLCVEQN 83

Query: 82  IAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H+++         +  + Q+   +     R  ++  +A       +  AH  DD +E+
Sbjct: 84  IPHTILYTNIAQTIREKRREQSSYCSFCSRMRRGVLYNYALEHGYNKLALAHHLDDAVES 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            +M    ++   G  L  M      +  L++ RP +  R      F+  +NI    D
Sbjct: 144 FFM----NFTYNG-SLRSMPPIYKAENGLFVIRPLIHIRERQSIDFVKSQNIPTAPD 195


>gi|119174426|ref|XP_001239574.1| hypothetical protein CIMG_09195 [Coccidioides immitis RS]
          Length = 812

 Score = 43.1 bits (100), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 8/133 (6%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DSM L      ++ +     +   A  VDH  RE + DE   V+     + +   
Sbjct: 44  VSGGPDSMALAHLCRRLIVEGHIPDLNVKAFIVDHKAREKSTDEALKVAGWIKSMGLKSQ 103

Query: 86  VVS--W----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           V++  W    K+          AR  RY  +     T N   +   H  DD +ET  +R 
Sbjct: 104 VLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHHRDDNVETALLRL 163

Query: 140 QRDYAEKGMGLSG 152
            + +     GL+G
Sbjct: 164 AQGHGR--FGLAG 174


>gi|295688126|ref|YP_003591819.1| tRNA(Ile)-lysidine synthetase [Caulobacter segnis ATCC 21756]
 gi|295430029|gb|ADG09201.1| tRNA(Ile)-lysidine synthetase [Caulobacter segnis ATCC 21756]
          Length = 408

 Score = 43.1 bits (100), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 10/180 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + V  SGG DS+ LL A  ++   R  G+    A+ VDH L+    D  R+ +    +
Sbjct: 21  APLAVGFSGGGDSLFLLKA--ALDWARPSGRPVL-ALVVDHRLQ---ADSARWTAQAVEK 74

Query: 80  LRIAHS---VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            R   +    ++W   KP  GL AAAR AR+AL++E A+   A +++  HT  D  E+  
Sbjct: 75  ARALGAEARALAWTGPKPAAGLPAAARRARHALLAEAAREAGAKVLLLGHTASDLAESAA 134

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR++          S          ++++ RP L   R +IR+ L     +W EDP+N D
Sbjct: 135 MRAEGSTVPDPRAWS-PSPVWPEGRDVFLLRPLLFLTRGEIRAALAAEGQTWLEDPANVD 193


>gi|124112132|ref|YP_001019116.1| hypothetical chloroplast RF62 [Chlorokybus atmophyticus]
 gi|124012239|gb|ABM87973.1| hypothetical chloroplast RF62 [Chlorokybus atmophyticus]
          Length = 345

 Score = 42.7 bits (99), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 15/197 (7%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L  P   IL+A SGG DS+ L+  L+ + S  ++   +      DH  +  +     +
Sbjct: 36  RRLFKPNQRILIAASGGQDSICLIKILNQLKSQWNW---QLGIAHCDHLWQIDSFYAASH 92

Query: 73  VSDVCSRLRI-AHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           VS +   L I  +  ++ K  N++ +      AR  RY ++ + A + + T I+TAHT  
Sbjct: 93  VSQLAENLNIDYYQCITTKVFNNEEK------ARLWRYKILEQIASSHDYTAIVTAHTAS 146

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D+ ET      R       GL  +         + I RP L   R ++     Q  +   
Sbjct: 147 DRTETFLYNLLRGTGPD--GLQSLSWKRKLKSGIRIIRPLLSTTRFELTVLAKQLQMPLW 204

Query: 190 EDPSNTDDRFERVRVRR 206
            D SN D  F+R  +R+
Sbjct: 205 PDKSNQDLFFKRNLIRK 221


>gi|148652148|ref|YP_001279241.1| tRNA(Ile)-lysidine synthetase [Psychrobacter sp. PRwf-1]
 gi|172048461|sp|A5WCA0|TILS_PSYWF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|148571232|gb|ABQ93291.1| tRNA(Ile)-lysidine synthetase [Psychrobacter sp. PRwf-1]
          Length = 525

 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 22/187 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79
           + +A SGG DS+GL +   ++      G++ F    I V+H ++    +  + V+    +
Sbjct: 27  VWLACSGGRDSLGLALLCRTLFDQ---GRLPFLPQLIHVNHGMQAANDEWAQQVAQWAQQ 83

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +A  ++    +        AAR+ RY  + +     +  +++  H  DDQ+ET+ MR 
Sbjct: 84  HDMACQIIGLNLTHKSE---QAARDGRYQAMMQLMNQDD--VLILGHHQDDQVETLLMRL 138

Query: 140 QRDYAEKGMG-----LSGMCDTILY--DLN-----LWISRPFLRCRREDIRSFLLQRNIS 187
                  G+G      S    T     D+N     +++ RP+L   R+ I  +  + N+ 
Sbjct: 139 FNGAGVTGLGAMREWTSKQAHTAQSPPDVNKPRQRIFLWRPWLEISRDQITEYAQRHNLK 198

Query: 188 WCEDPSN 194
           + +DP+N
Sbjct: 199 YIDDPTN 205


>gi|32266754|ref|NP_860786.1| hypothetical protein HH1255 [Helicobacter hepaticus ATCC 51449]
 gi|61216602|sp|Q7VGR5|TILS_HELHP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|32262806|gb|AAP77852.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 423

 Score = 42.7 bits (99), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 73/194 (37%), Gaps = 29/194 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR- 81
           L+  S G DS  L   L          +I F    V +  R  A DEV Y  ++ +    
Sbjct: 39  LLGFSSGVDSTALFFLLLEC-------EIPFDIAIVHYHTRLQADDEVAYAKELAATYNK 91

Query: 82  ---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              +AH+              + AR  R+          + T ++ AH  +D+LE + M+
Sbjct: 92  LCFVAHA------PHFNANFESNARSFRFDFFQSLIIKHHYTHLLLAHQLNDRLEWLLMQ 145

Query: 139 SQRDYAEKGMGLS---GMCDT-ILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCED 191
                  KG GL    G  D    YD    N  I RP     + ++  F  +R I + ED
Sbjct: 146 -----LTKGAGLGNLLGFADERYNYDKSLNNYTIVRPLESIPKNELYRFCKERGIKYFED 200

Query: 192 PSNTDDRFERVRVR 205
            SN D  F R   R
Sbjct: 201 SSNQDKTFRRNYFR 214


>gi|160938841|ref|ZP_02086192.1| hypothetical protein CLOBOL_03735 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437804|gb|EDP15564.1| hypothetical protein CLOBOL_03735 [Clostridium bolteae ATCC
           BAA-613]
          Length = 241

 Score = 42.7 bits (99), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 86/195 (44%), Gaps = 18/195 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           I + VSGG DS+     LH++   R F   K +  AI+VD  L      ++  V+ +C  
Sbjct: 26  IAIGVSGGKDSL---TLLHALHHLRRFYPEKYELCAITVDLGL---GNMDLEPVAAMCRE 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             I + ++S +      + + +T   +   + R   ++E AK +    I  AH  DD +E
Sbjct: 80  FEIPYEIISTEIGAVLFDIRKETNPCSLCAKMRKGALNEKAKEMGCNKIAYAHHRDDVIE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ M     Y  +    S +  T L  ++L + RP +     D+  F  +  +  C++P 
Sbjct: 140 TMMM--SLFYEGRFHSFSPL--TYLDRMDLTVIRPMIFVTEADVIGFRNKYQLPVCKNPC 195

Query: 194 NTDDRFERVRVRRFV 208
             D   +R  ++  +
Sbjct: 196 PMDGYTKRQYIKELI 210


>gi|159126807|gb|EDP51923.1| PP-loop family protein [Aspergillus fumigatus A1163]
          Length = 661

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 21/154 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P ++ +AVSGG+DSM L      +        +  +A  VDH  RE +  E R V+   S
Sbjct: 45  PRNLGLAVSGGADSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARTVATWLS 104

Query: 79  RL-RIAHSVVSWKNSKPQTGLMAA------------------AREARYALISEHAKTINA 119
            + +    +V+   +   TGL A                   AR  R+  +    +    
Sbjct: 105 DMGKPDDDLVNSPGTNSHTGLQAQILALEWPQGSSVSAFETHARRLRFQALGIACRDRRI 164

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM 153
           + ++  H  DD +ET   R       +G GL+G+
Sbjct: 165 SALLMGHHQDDNVETTLWR--LCTGARGAGLAGI 196


>gi|148906402|gb|ABR16355.1| unknown [Picea sitchensis]
          Length = 410

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 28/199 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ILVAVSGG DS+ LL  L  +     +   K   +  DH    +++  +  +V+ V   +
Sbjct: 91  ILVAVSGGQDSICLLWMLSQLQQSWEW---KVGVVHCDHQWNPQSSAAQASHVAHVAREM 147

Query: 81  RIAHSVVSWKNSKPQTGLMAA--AREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
                   +  S P         AR  RY ++   A      +++TAHT  D++ET+   
Sbjct: 148 G-----YDFYQSLPTMDAFGETRARTWRYGVLHRIALRHAYDVVITAHTASDRIETLLHN 202

Query: 139 SQRDYAEKGMGLSGMCD---------TILYD---LNLWISRPFLRCRREDIRSFLLQRNI 186
             R     G GL GM            + Y     ++ + RP L   R ++R       +
Sbjct: 203 LFR-----GTGLQGMQSLTWTREFRVRVPYHKPYKHVRLVRPLLDTTRTELRKLCETLQL 257

Query: 187 SWCEDPSNTDDRFERVRVR 205
               DPSN +    R R+R
Sbjct: 258 PLWPDPSNFNLEINRNRIR 276


>gi|254434620|ref|ZP_05048128.1| hypothetical protein NOC27_1551 [Nitrosococcus oceani AFC27]
 gi|207090953|gb|EDZ68224.1| hypothetical protein NOC27_1551 [Nitrosococcus oceani AFC27]
          Length = 304

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 17/167 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  LL  L   LS +    +KF  I+V+   ++    E     Y+  +  
Sbjct: 41  LMVCLSGGKDSYALLDIL---LSLQKHAPVKFDLIAVNLDQKQPGFPEHVLPHYLESLGV 97

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             RI     +SVV     + +T     +R  R  ++   A+ + AT I   H  DD LET
Sbjct: 98  SYRIVEQDTYSVVKRVIPEGKTTCSLCSR-LRRGILYGTAEELGATKIALGHHRDDILET 156

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSF 180
            ++         G  L GM   +L D    I  RP   CR +D+ ++
Sbjct: 157 FFLN-----MFHGGTLKGMPPKLLSDNGRHIVIRPLAYCREKDLETY 198


>gi|33592954|ref|NP_880598.1| hypothetical protein BP1912 [Bordetella pertussis Tohama I]
 gi|61216607|sp|Q7VX92|TILS_BORPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33572602|emb|CAE42194.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382366|gb|AEE67213.1| hypothetical protein BPTD_1884 [Bordetella pertussis CS]
          Length = 321

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 7/113 (6%)

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ AAAR ARY  ++  A+      I+ AH  +DQ ETV +R  R    +GM  + M   
Sbjct: 87  GMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETVLLRLLRGTGLQGM--AAMAPF 144

Query: 157 ILYDLNLWISRPFLRCRREDIRSF--LLQRNISW--CEDPSNTDDRFERVRVR 205
              D   ++ RP+L      I +    ++    W   +DP+NTD R+ R  VR
Sbjct: 145 SERDGVAYL-RPWLDVDHAAILALAGAVRAQCGWQAVQDPTNTDPRYARAAVR 196


>gi|169335606|ref|ZP_02862799.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258344|gb|EDS72310.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM
           17244]
          Length = 234

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVR-YVSDVC 77
           HI VAVSGG DSM LL AL + +    F  +KF  +AIS+D        +++R + SD+ 
Sbjct: 23  HICVAVSGGKDSMILLKALRTFM---YFSPVKFKLTAISIDVGFDNMDFEKLRVFCSDLD 79

Query: 78  SRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             L+I  + ++   +   K +      ++  R AL +E A +I +  I   H  DD +E+
Sbjct: 80  IPLKIVKTDIAKIVFDERKEKNPCSLCSKMKRAAL-NETALSIGSNKIAYGHHRDDFIES 138


>gi|260655018|ref|ZP_05860506.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1]
 gi|260630333|gb|EEX48527.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1]
          Length = 281

 Score = 42.7 bits (99), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 44/249 (17%)

Query: 16  LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRY 72
           L++P   I V +SGG DS  LL AL  +   + +  +KF+  A++VD         + R 
Sbjct: 31  LIHPGDRIAVGLSGGKDSSLLLYALACM---KRWSPVKFTLQALTVDMT---DGNWDTRP 84

Query: 73  VSDVCSRLRIAHSVVSW--------KNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           ++ +C  L + + VV++        +N +      A  R     ++   A+ +    +  
Sbjct: 85  MAALCDMLDVPYQVVTFPVVSAIEGRNERSPCSFCANIRRG---ILDGTARQLGCNSVAL 141

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFL-----RCRREDIR 178
            H  DD +ETV M   R     G         +  D + +W+ RP +     + R E+ R
Sbjct: 142 GHHLDDTVETVLMNLFR-----GGRFRAYLPRLYQDRSQVWVIRPLVYLTERQVRLENER 196

Query: 179 SFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             L + ++S+ C   S+T    ER R +  VR ++        + F  L+  V +A+  L
Sbjct: 197 LGLTRFHLSYTCPFSSDT----ERARTKELVRKLE--------ETFPSLKSNVQHALETL 244

Query: 238 IPKYLTVHM 246
               L  H+
Sbjct: 245 TEDDLWRHV 253


>gi|220930764|ref|YP_002507673.1| PP-loop domain protein [Clostridium cellulolyticum H10]
 gi|220001092|gb|ACL77693.1| PP-loop domain protein [Clostridium cellulolyticum H10]
          Length = 239

 Score = 42.7 bits (99), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 20/199 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DSM LL AL   L +    K +  AIS+   +      +   V + C ++ 
Sbjct: 27  IAVGVSGGKDSMTLLTALRQ-LQNFYPKKFELEAISLTMGI---GNADFTPVVEYCKKIG 82

Query: 82  IAHS---------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + ++         +   +N K    + A  R  R AL ++ AKT+    +   H  DD +
Sbjct: 83  VNYTIEETLIGKIIFEVRNEKNPCSMCANLR--RGALHNK-AKTLGCNKVALGHHRDDAV 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ + +   Y  +    S +  T L   +L++ RP +    + I+S +   ++   + P
Sbjct: 140 ETLLLSTF--YEGRIHTFSPV--TYLDRKDLYLIRPLIYTEEKQIKSVVKSESLPIVKSP 195

Query: 193 SNTDDRFERVRVRRFVRDI 211
            + D + +R  ++  + D+
Sbjct: 196 CHVDGKTKRQFIKDLILDL 214


>gi|118462421|ref|YP_879811.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104]
 gi|118163708|gb|ABK64605.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104]
          Length = 320

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G G+  +     +D   W  RP L  RR    +  
Sbjct: 116 VLLGHTLDDQAETVLLGLGR-----GSGVRSIAGMRPHDPP-WC-RPLLGQRRAVTHAAC 168

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  ++  +DP N+D RF R R+R  V
Sbjct: 169 AELGLTAWQDPHNSDRRFTRARLRAEV 195


>gi|156047811|ref|XP_001589873.1| hypothetical protein SS1G_09595 [Sclerotinia sclerotiorum 1980]
 gi|154693990|gb|EDN93728.1| hypothetical protein SS1G_09595 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 587

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 33/138 (23%)

Query: 26  VSGGSDSMGL----------LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           VSGG DSM L           I   S        KI F AI V+H +R+ + +E + V  
Sbjct: 37  VSGGVDSMALAALCMQMKNNYIPFASDGYPIHLNKIDFRAIIVNHGVRDGSLEEAQKVMK 96

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           V   L                     AR+ R+  I ++ +  +   ++  H  DDQ ETV
Sbjct: 97  VLESL---------------------ARKYRFQAIGKYCQKSDINSLLLGHHSDDQAETV 135

Query: 136 YMRSQRDYAEKGMGLSGM 153
            MR  +     G GL G+
Sbjct: 136 VMRLAK--GALGAGLLGI 151


>gi|77165079|ref|YP_343604.1| ATPase [Nitrosococcus oceani ATCC 19707]
 gi|123594216|sp|Q3JAS2|TTCA_NITOC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|76883393|gb|ABA58074.1| tRNA s(2)C-32 sulfurtransferase [Nitrosococcus oceani ATCC 19707]
          Length = 302

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 17/167 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  LL  L   LS +    +KF  I+V+   ++    E     Y+  +  
Sbjct: 39  LMVCLSGGKDSYALLDIL---LSLQKHAPVKFDLIAVNLDQKQPGFPEHVLPHYLESLGV 95

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             RI     +SVV     + +T     +R  R  ++   A+ + AT I   H  DD LET
Sbjct: 96  SYRIVEQDTYSVVKRVIPEGKTTCSLCSR-LRRGILYGTAEELGATKIALGHHRDDILET 154

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSF 180
            ++         G  L GM   +L D    I  RP   CR +D+ ++
Sbjct: 155 FFLN-----MFHGGTLKGMPPKLLSDNGRHIVIRPLAYCREKDLETY 196


>gi|326422516|gb|EGD71912.1| PP-loop domain protein [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 301

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 14/135 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS+ LL  L       +    +  +I++D  ++      +  +   C    
Sbjct: 48  VAVANSGGKDSLSLLYILAKYFKKNN----EIVSITIDEGIKGYRDKTIEIMKRYCDEYG 103

Query: 82  IAHSVVSWKNSKPQT---------GL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           I + + S+K+   +T         G+  AA    R  LI+  AK   A  + TAH  DD+
Sbjct: 104 IKYKIYSYKDLTGKTMDYIASLKKGIPCAACGVLRRYLINYAAKDNKADKLATAHNLDDE 163

Query: 132 LETVYMRSQRDYAEK 146
            E V M   ++  EK
Sbjct: 164 AENVIMNLVQNDVEK 178


>gi|306813631|ref|ZP_07447812.1| C32 tRNA thiolase [Escherichia coli NC101]
 gi|305852905|gb|EFM53350.1| C32 tRNA thiolase [Escherichia coli NC101]
          Length = 311

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           V++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 VFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|148381240|ref|YP_001255781.1| PP-loop family protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931301|ref|YP_001385615.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937030|ref|YP_001389021.1| PP-loop family protein [Clostridium botulinum A str. Hall]
 gi|148290724|emb|CAL84855.1| putative ATP-binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927345|gb|ABS32845.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932944|gb|ABS38443.1| PP-loop family protein [Clostridium botulinum A str. Hall]
          Length = 249

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 13/192 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76
           I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L    +      +   +  V
Sbjct: 32  IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLNMDLEPLKIFCKKNSIDLV 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +  IA+ V + +  K    L +  R+     +S   K+I AT I   H  DD +ET++
Sbjct: 91  IEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   +    K    S   D    D  + I RP +  R + I++ + + N+   +     D
Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKNLVKKHNLPVVKSTCPED 203

Query: 197 DRFERVRVRRFV 208
            +  R  ++  +
Sbjct: 204 KKTTREEMKNLM 215


>gi|323357530|ref|YP_004223926.1| ATPase PP-loop [Microbacterium testaceum StLB037]
 gi|323273901|dbj|BAJ74046.1| predicted ATPase of the PP-loop superfamily [Microbacterium
           testaceum StLB037]
          Length = 332

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 8/205 (3%)

Query: 6   IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +  VR  VR+ +      ++VA+SGG DS   L    +   +     I+  A+ +DH L+
Sbjct: 11  VAEVRRAVRAALERIDGSVVVALSGGPDS---LALAAATAFEAPRAGIRAEAVVIDHGLQ 67

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           + +       ++    L +   VV+ +      G  AAAREARYA ++  A  I A  ++
Sbjct: 68  DGSDAVAAAAAEKARALGLDARVVTVQVGS-GDGPEAAAREARYAGLARAAADIRADAVL 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             HT DDQ ETV +   R        LSGM             RP L  RR    +    
Sbjct: 127 LGHTLDDQAETVLLGLARGAG--AASLSGMAPERRDATGPTWVRPLLAVRRRVTVAACAA 184

Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208
             +    DP N D  + RVRVR  V
Sbjct: 185 EGLDPWTDPHNADPAYTRVRVRERV 209


>gi|20807962|ref|NP_623133.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|20516534|gb|AAM24737.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
          Length = 235

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 18/199 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--------EVRYV 73
           I V VSGG DS+ LL  LH +   + F  IKF  + +   L     D        E + +
Sbjct: 24  IAVGVSGGKDSITLLYGLHLL---KRFYPIKFEVMGLMLSLGFENFDPTPIKNFCEEKGI 80

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                   I   V  ++  K    L A  R  R AL ++ AK      +  AH +DD + 
Sbjct: 81  PFFVKHTEIKKIVFDYRKEKNPCSLCANLR--RGAL-NDFAKEKGCNKVALAHHYDDLIV 137

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  M    +    G   +    T L    + + RP +  R +++RS + + N+   E+P 
Sbjct: 138 TFMM----NLFYNGRLHTFEPVTFLDRSKITLIRPLIYVREKEVRSAVKKNNLPVVENPC 193

Query: 194 NTDDRFERVRVRRFVRDID 212
                  R  +   +R+++
Sbjct: 194 PMAGNTTRHSIENLIRNLE 212


>gi|312137453|ref|YP_004004790.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311225172|gb|ADP78028.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 297

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 14/126 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+  L AL ++ ++ +F   K +AI +D  ++   K+ ++Y+     +L 
Sbjct: 43  ISVALSGGKDSLLTLYALKNLQNEINF---KLNAIFIDEGIKNYRKNALKYLRKHVKKLE 99

Query: 82  IAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +     S+K               T  +      RY L+++ A  + A+ + T H  DD+
Sbjct: 100 VELIKKSFKEEFGFKVDEIKDYFDTPCIPCGIFRRY-LLNKTAYEVGASKLATGHNLDDE 158

Query: 132 LETVYM 137
           +++  M
Sbjct: 159 IQSFLM 164


>gi|82776711|ref|YP_403060.1| C32 tRNA thiolase [Shigella dysenteriae Sd197]
 gi|309788962|ref|ZP_07683557.1| PP-loop family protein [Shigella dysenteriae 1617]
 gi|123562717|sp|Q32GI6|TTCA_SHIDS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|81240859|gb|ABB61569.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308923233|gb|EFP68745.1| PP-loop family protein [Shigella dysenteriae 1617]
          Length = 311

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E   + Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLLEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|88607318|ref|YP_505641.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ]
 gi|88607616|ref|YP_505613.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ]
 gi|88598381|gb|ABD43851.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ]
 gi|88598679|gb|ABD44149.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ]
          Length = 269

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 147 GMGLSGMCD----TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
           G G+ G+      +++ D+   I RP L   R +I+ + +Q    W EDPSN+D ++ R 
Sbjct: 3   GSGIDGLAGIRERSVIGDVT--IIRPLLDFTRREIQEYAIQHQQPWIEDPSNSDPKYRRT 60

Query: 203 RVRRFVRD 210
             R F+ +
Sbjct: 61  FYRNFINN 68


>gi|332678470|gb|AEE87599.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf.
           novicida Fx1]
          Length = 253

 Score = 42.4 bits (98), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 16/201 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           +++ +SGG DS GLL  LH ++ D+++  I     ++D         ++R Y+ D+C   
Sbjct: 28  VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLCVSY 86

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I     + VV  K  + +T     +R  R   I  +AK      I+  H  DD ++++ 
Sbjct: 87  EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           M        +G   S     +  D    + RP +  +  D+  F  + N      P N  
Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199

Query: 195 -TDDRFERVRVRRFVRDIDLH 214
            + +  +R +V++ ++D+ L 
Sbjct: 200 GSQENLKRKKVKKLIQDLALE 220


>gi|301025572|ref|ZP_07189095.1| PP-loop family protein [Escherichia coli MS 69-1]
 gi|300395892|gb|EFJ79430.1| PP-loop family protein [Escherichia coli MS 69-1]
          Length = 311

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDTLQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|254773192|ref|ZP_05214708.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 320

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G G+  +     +D   W  RP L  RR    +  
Sbjct: 116 VLLGHTLDDQAETVLLGLGR-----GSGVRSIAGMRPHDPP-WC-RPLLGQRRAVTHAAC 168

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  ++  +DP N+D RF R R+R  V
Sbjct: 169 AELGLTAWQDPHNSDRRFTRARLRAEV 195


>gi|227111869|ref|ZP_03825525.1| C32 tRNA thiolase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 311

 Score = 42.4 bits (98), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 28/234 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E    +Y+  +  
Sbjct: 42  IMVCLSGGKDSFTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F   R       P N
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARQYPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
              +    +R  ++  +RD D        K++      + +A+  ++P +L  H
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KRYPGRIETMFSAMQNVVPSHLADH 257


>gi|156933849|ref|YP_001437764.1| C32 tRNA thiolase [Cronobacter sakazakii ATCC BAA-894]
 gi|205830588|sp|A7MLI7|TTCA_ENTS8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|156532103|gb|ABU76929.1| hypothetical protein ESA_01675 [Cronobacter sakazakii ATCC BAA-894]
          Length = 310

 Score = 42.4 bits (98), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E     Y+S +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPEYLSSLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|227326371|ref|ZP_03830395.1| C32 tRNA thiolase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 311

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 97/234 (41%), Gaps = 28/234 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E    +Y+  +  
Sbjct: 42  IMVCLSGGKDSFTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F   R       P N
Sbjct: 158 MFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARQYPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
              +    +R  ++  +RD D        K++      + +A+  ++P +L  H
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KRYPGRIETMFSAMQNVVPSHLADH 257


>gi|296102189|ref|YP_003612335.1| C32 tRNA thiolase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056648|gb|ADF61386.1| C32 tRNA thiolase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 311

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    +KFS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVKFSLVAVNLDQKQPGFPEHILPEYLDKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|50120922|ref|YP_050089.1| C32 tRNA thiolase [Pectobacterium atrosepticum SCRI1043]
 gi|81645225|sp|Q6D5P6|TTCA_ERWCT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|49611448|emb|CAG74896.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 311

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 20/201 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E    +Y+ ++  
Sbjct: 42  IMVCLSGGKDSFTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPQYLDNIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F   R       P N
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARQYPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDID 212
              +    +R  ++  +RD D
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD 232


>gi|219851846|ref|YP_002466278.1| PP-loop domain protein [Methanosphaerula palustris E1-9c]
 gi|219546105|gb|ACL16555.1| PP-loop domain protein [Methanosphaerula palustris E1-9c]
          Length = 304

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 12/126 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS  LL  ++ +L  R+  ++   AI+VD  +R+   + +     +  RL 
Sbjct: 50  IAVALSGGKDSTVLLWLMNMLLGKRAADRL--VAITVDEGIRDYRDETLAAARRLTHRLG 107

Query: 82  IAHSVVSWKN--SKPQTGLMAAAREA--------RYALISEHAKTINATLIMTAHTFDDQ 131
           I H +VS+++        L+   RE         R   + + A    A ++ T H  DD+
Sbjct: 108 IRHIIVSFQDLFGADLDSLLIGNRERACSVCGVYRRQALQQTAVEAGAGVLATGHCLDDE 167

Query: 132 LETVYM 137
            ++V M
Sbjct: 168 AQSVLM 173


>gi|283785362|ref|YP_003365227.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter
           rodentium ICC168]
 gi|282948816|emb|CBG88417.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter
           rodentium ICC168]
          Length = 311

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I+FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPIRFSLVAVNLDQKQPGFPEHILPEYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|26553959|ref|NP_757893.1| hypothetical protein MYPE5070 [Mycoplasma penetrans HF-2]
 gi|26453967|dbj|BAC44297.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 264

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 22  ILVAVSGGSDSMGLLIAL---HSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVC 77
           I V VSGG DSM +L AL     ++       I    I +   L     D + +Y +D+ 
Sbjct: 24  IAVGVSGGKDSMLMLKALSIYKKIVKSELNWDIDVVGIHLKMNLCHIEYDPIIKYWNDMG 83

Query: 78  SRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              ++  + +        K  K Q  L +  ++A   ++ + AK +N   +   H  DD 
Sbjct: 84  INFKVVETTMGEILRGQIKKGKIQCSLCSKLKKA---ILIDEAKKLNCNKVAMGHHADDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           +ET +M    +   +G   +      L   ++W  RPF+  R +DI     + N+
Sbjct: 141 IETFFM----NMINEGRIATFKPSMYLDRSDIWFIRPFIFAREKDIAKAANKENM 191


>gi|269128702|ref|YP_003302072.1| tRNA(Ile)-lysidine synthetase [Thermomonospora curvata DSM 43183]
 gi|268313660|gb|ACZ00035.1| tRNA(Ile)-lysidine synthetase [Thermomonospora curvata DSM 43183]
          Length = 335

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + E A+   A +++  HT DDQ ETV +   R    +   L+GM          ++ RP 
Sbjct: 112 LDEAARRAGAAVLL-GHTLDDQAETVLLGLARGSGARS--LAGMPPRFQRGEICYM-RPL 167

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           L   R   R       ++  +DP N D  + RVR+RR V
Sbjct: 168 LGLERATTRRACRAMGLTPWDDPHNEDPAYTRVRLRREV 206


>gi|183598903|ref|ZP_02960396.1| hypothetical protein PROSTU_02339 [Providencia stuartii ATCC 25827]
 gi|188021111|gb|EDU59151.1| hypothetical protein PROSTU_02339 [Providencia stuartii ATCC 25827]
          Length = 304

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  LL  L S+   +    I FS ++V+   ++    E     Y+ ++  
Sbjct: 37  IMVCLSGGKDSYTLLSILQSL---QKSAPISFSLVAVNLDQKQPGFPEHILPEYLENLGI 93

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 94  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 152

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  +
Sbjct: 153 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERY 194


>gi|223998234|ref|XP_002288790.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975898|gb|EED94226.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 613

 Score = 42.0 bits (97), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 25/173 (14%)

Query: 122 IMTAHTFDDQLETVYMRSQR----------DYAEKGMGLSGMCDTILYD------LNLWI 165
           I+TAH  DD  ET+ ++  R          D    G  L  + D              + 
Sbjct: 231 ILTAHHRDDVDETILLKLLRGSHLTNLWGMDARSDGFDLLALHDNDTVSKSPASTFTGYF 290

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI------DLHALYLK 219
           ++P L  R+ D+  +L  ++I W ED SN  ++++R ++R  V  +         AL  +
Sbjct: 291 AKPMLSIRKNDVLDYLNSQSIEWREDESNNSNKYKRNKIRNEVMPLLKELAGGEDALQKR 350

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272
               ++    ++  +     KYL + M S       IL  DST+LF L R  A
Sbjct: 351 FSNLEEQSRAISQHLLNRAEKYL-LDMPSNSVFHLTIL--DSTILFDLEREEA 400


>gi|298704809|emb|CBJ48957.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 542

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 15/89 (16%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR----CRRED 176
           +I TAH  DDQ ETV +++ R        + GM          W S PF+R      + +
Sbjct: 149 VIATAHHKDDQTETVLLKALR--GAHITNIQGMA---------WHSDPFVRPLLGAHKTE 197

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           +  FL++   +W ED SN   ++ R RVR
Sbjct: 198 LLDFLVRGRHAWREDGSNQVAKYARNRVR 226


>gi|296133881|ref|YP_003641128.1| PP-loop domain protein [Thermincola sp. JR]
 gi|296032459|gb|ADG83227.1| PP-loop domain protein [Thermincola potens JR]
          Length = 261

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 9/129 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   IL+ +SGG DS  L+ AL  +     F K    AI++D  L  T K + + +
Sbjct: 21  ELVEPNDRILIGLSGGKDSAFLVYALGVLRRHFPF-KFDIGAITID--LGFTDKFDRQPL 77

Query: 74  SDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            D C RL +        +     S  Q    AA    R  +IS  A+      +  AH  
Sbjct: 78  EDFCRRLDVPFFFEKTQIAEIAFSPSQPNPCAACAFFRKGIISACARAEGFNKVAFAHHL 137

Query: 129 DDQLETVYM 137
           DD +ET  M
Sbjct: 138 DDAVETFLM 146


>gi|170768722|ref|ZP_02903175.1| protein YdaO [Escherichia albertii TW07627]
 gi|170122270|gb|EDS91201.1| protein YdaO [Escherichia albertii TW07627]
          Length = 311

 Score = 42.0 bits (97), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E    +Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHVLPKYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|262275723|ref|ZP_06053532.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP
           101886]
 gi|262219531|gb|EEY70847.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP
           101886]
          Length = 308

 Score = 42.0 bits (97), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I F  ++V+   ++    E     Y+  +  
Sbjct: 41  IMVCLSGGKDSYTMLEILQSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 97

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H  DD LET
Sbjct: 98  EYKIVEEDTYSIVKDKIPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHHRDDMLET 156

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    + D   +     + RP   CR +DI  +
Sbjct: 157 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDIERY 198


>gi|309701645|emb|CBJ00952.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
          Length = 277

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 8   IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 64

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 65  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 123

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 124 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 165


>gi|300819436|ref|ZP_07099632.1| PP-loop family protein [Escherichia coli MS 107-1]
 gi|300527935|gb|EFK48997.1| PP-loop family protein [Escherichia coli MS 107-1]
          Length = 243

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|328866572|gb|EGG14956.1| hypothetical protein DFA_10830 [Dictyostelium fasciculatum]
          Length = 682

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%)

Query: 87  VSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145
           + W +  +P T +    R  R  L++  AK  N+  I+     DD +ET   R Q  +A 
Sbjct: 258 IEWGEEGQPLTAIQEICRYKRLELLTSVAKKFNSPAILMGTNKDDNIETFIHRIQ--FAS 315

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
              GL+ +        ++ + RP L   ++ +        IS+  D +N    FER R+R
Sbjct: 316 GIEGLASIEPISPLSASISLHRPLLTFSKDSLFGLCNHFGISFNHDTANDSLDFERNRIR 375


>gi|168185941|ref|ZP_02620576.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str.
           Eklund]
 gi|169296152|gb|EDS78285.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str.
           Eklund]
          Length = 239

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 15/177 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS+ LL  L++    + F    F  +++   L   A  +   +  +C  L 
Sbjct: 24  IAVGLSGGKDSITLLYLLNAY---KRFSPQPFELLAI--TLDPGAGADFTEMIRICKELS 78

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + + +   +      + + ++   +     R   +++HAK +    +   H  +D +ET+
Sbjct: 79  VPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKVALGHHKNDAIETL 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            M        +G   +   DT L   +L I RP +    ++I++ +   NIS  E+P
Sbjct: 139 LM----SMFYEGRINTFSPDTYLSRSDLHIIRPMIYIDEQNIKTLIKNSNISIVENP 191


>gi|159030184|emb|CAO91076.1| tilS [Microcystis aeruginosa PCC 7806]
          Length = 324

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 7/153 (4%)

Query: 56  ISVDHCLRETAKDE--VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH 113
           +++ HC    ++D   V +V  +    ++   + +   + P     A AR+ RY  +   
Sbjct: 56  LAIAHCDHRWSQDRGLVDHVRKIAEIWQLPVYIAT---APPMAETEAKARQWRYQALQTI 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+      ++TAHT  D+ ET      R     G+       ++  D  +++ RP L   
Sbjct: 113 AQEQGFNYLLTAHTRSDRAETFLYNLTRGAGSDGLSALTWLTSLTPD--IFLVRPLLNVT 170

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           R +  +F   R +    D +N + R+ R R+R+
Sbjct: 171 RGETFAFCQSRELPIWYDRANENLRYARNRIRQ 203


>gi|94502298|ref|ZP_01308777.1| ATP-binding PP-loop protein [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451150|gb|EAT14096.1| ATP-binding PP-loop protein [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 153

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 15/132 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVSDV 76
           I V+VS G DSM LL  L  + +           I V HC      +++ KDE+ ++ + 
Sbjct: 22  IYVSVSSGLDSMVLLDVLIKICN---------FTICVIHCNFNLRGKDSDKDEL-FIQEF 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + +I     ++   K    +   AR+ RY              I   H  DD +ET +
Sbjct: 72  CLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCDYIALGHHLDDSIETFF 131

Query: 137 MRSQRDYAEKGM 148
           +   R    KG+
Sbjct: 132 INLIRGTGIKGL 143


>gi|168179056|ref|ZP_02613720.1| PP-loop family protein [Clostridium botulinum NCTC 2916]
 gi|226950722|ref|YP_002805813.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto]
 gi|182670110|gb|EDT82086.1| PP-loop family protein [Clostridium botulinum NCTC 2916]
 gi|226842372|gb|ACO85038.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 19/195 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VSD 75
           I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L +   + +++      +  
Sbjct: 32  IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGL-DMDLEPLKFFCKKNSIDL 89

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           V  +  IA+ V + +  K    L +  R+     +S   K+I AT I   H  DD +ET+
Sbjct: 90  VIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETL 146

Query: 136 YMRSQRDYAEKGMGLSGMCD-TILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           +M   +      +G  G  +  I Y D  + I RP +  R + I+  + + N+   +   
Sbjct: 147 FMNVLK------IGKFGSFNPHIDYKDKYVHIIRPLIYLREDLIKDLVKKHNLPVVKSTC 200

Query: 194 NTDDRFERVRVRRFV 208
             D +  R  ++  +
Sbjct: 201 PEDKKTTREEMKNLM 215


>gi|195941077|ref|ZP_03086459.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC4024]
 gi|295095744|emb|CBK84834.1| tRNA s(2)C-32 sulfurtransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E     Y+ ++  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPEYLENLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|170780553|ref|YP_001708885.1| hypothetical protein CMS_0097 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155121|emb|CAQ00221.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCR 173
           +   +  ++ AHT DDQ ETV +   R        L GM  +        +  RP L  R
Sbjct: 125 RATGSRALLLAHTLDDQAETVLLGLAR--GSGAASLHGMARSTPARTAGAVHLRPLLGIR 182

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
               R+    + +   +DP N D  + RVRVR  V
Sbjct: 183 AAITRAACADQGLDPWQDPHNADPSYARVRVRHDV 217


>gi|54022352|ref|YP_116594.1| hypothetical protein nfa3880 [Nocardia farcinica IFM 10152]
 gi|61216446|sp|Q5Z2W1|TILS_NOCFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|54013860|dbj|BAD55230.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 318

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R    +   + GM          W  RP L  RR D R   
Sbjct: 111 VLLGHTLDDQAETVLLGLARGSGARS--IRGMAAYT----PPW-GRPLLGVRRADTRRLC 163

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
               ++  EDP N    F RVR+R  V
Sbjct: 164 ADLGLTPHEDPHNRSAEFTRVRLRTEV 190


>gi|291277350|ref|YP_003517122.1| putative tRNA(Ile)-lysidine synthase TilS [Helicobacter mustelae
           12198]
 gi|290964544|emb|CBG40397.1| putative tRNA(Ile)-lysidine synthase, TilS [Helicobacter mustelae
           12198]
          Length = 331

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 26/190 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS---- 78
           L+  SGG DS  L   L           I F    VD+ LRE +  EV Y  ++ +    
Sbjct: 13  LLGFSGGPDSTALFFCLLEE-------GIDFDMGIVDYGLREQSIKEVAYAKELAACYQK 65

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           RL I  ++   ++ + Q      AR  RY       K      ++ AH  +D+LE   M+
Sbjct: 66  RLFIHQALGIVRDFEHQ------ARVQRYGFFERIIKEEGYENLLLAHHLNDRLEWFIMQ 119

Query: 139 SQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                  KG GL+ +      +      I RP L   ++ I   + +R   + ED SN +
Sbjct: 120 -----LCKGSGLNNLLGFRRREEREGYVIVRPLLEISKDQILEMVRKR--VYFEDSSNEN 172

Query: 197 DRFERVRVRR 206
            R  R ++R+
Sbjct: 173 TRIWRNKIRK 182


>gi|317491972|ref|ZP_07950406.1| YdaO protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920093|gb|EFV41418.1| YdaO protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 312

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 15/170 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEDILPAYLDSIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDMLQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           +++        KGM    M D    D    + RP   CR +DI  F   R
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEAR 203


>gi|294496034|ref|YP_003542527.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
 gi|292667033|gb|ADE36882.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
          Length = 305

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 13/127 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS   L  L+ +   R    ++  AI+VD  +    +  + Y   + S + 
Sbjct: 55  IAVALSGGKDSCVALYILNKIFGKRR--DLELVAITVDEGISVYRERSIEYARKLTSDIG 112

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLIMTAHTFDD 130
           + H + S+ +    +    AA+E            R +L++  A  I A  ++T H  DD
Sbjct: 113 VKHLIHSFADEYDTSLDELAAKERVHGACSYCGVLRKSLVNRIALDIGAKRLVTGHNLDD 172

Query: 131 QLETVYM 137
           + +T+ M
Sbjct: 173 EAQTIMM 179


>gi|320664063|gb|EFX31250.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 303

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 34  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 90

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 91  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 149

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 150 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 191


>gi|320659159|gb|EFX26751.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 307

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 38  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 94

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 95  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 153

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 154 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 195


>gi|260887263|ref|ZP_05898526.1| ExsB family protein [Selenomonas sputigena ATCC 35185]
 gi|330838980|ref|YP_004413560.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863325|gb|EEX77825.1| ExsB family protein [Selenomonas sputigena ATCC 35185]
 gi|329746744|gb|AEC00101.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185]
          Length = 263

 Score = 41.6 bits (96), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 85/238 (35%), Gaps = 37/238 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L  AL ++L  R        A+++D    E     V  ++  C  + 
Sbjct: 28  ILIGISGGKDSIFLAYAL-AILQKRMKKNFSLCALTIDPQFTEDFP--VARIASFCEEIS 84

Query: 82  IAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           I    VS          P+          R   I+ +A+      +  AH  DD +ET+ 
Sbjct: 85  IPFEAVSVNIAGTIEETPEKNPCFTCAFFRRGAINRYAQEHGCNKVAYAHHNDDAVETLL 144

Query: 137 MRSQRDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           M         G+  SG   T      L    + + RP +  R  +IR  +     S    
Sbjct: 145 M---------GILYSGQIHTFTPKTYLDRSGITVIRPLVYFRESEIRDAIAVHGFSPIPS 195

Query: 192 PSNTDDRFERVRVRRFVRDID------LHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           P   D    R  V+  +   +       H L   M++         NAV  L P+  T
Sbjct: 196 PCPLDGTTMRQEVKELISSWEKKDPQIYHHLAASMRE---------NAVGELWPRMQT 244


>gi|330834210|ref|YP_004408938.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566349|gb|AEB94454.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 316

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 21/138 (15%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-SVDHCLRETAKDEVRY 72
           ++L+    IL+AVSGG DS+ L   L  +++      + F+ +  +    RE   D+VR 
Sbjct: 42  QNLLNANKILIAVSGGKDSLVLADTLSKIVNPNRI--VAFNIVEGIKGYNRE---DQVRE 96

Query: 73  VSDVCSRLRI-----------AHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTI 117
           +S+    L I            +++     S  Q GL  AA       R  LI+   + +
Sbjct: 97  LSNYLKELGIDLISTSFEKSVGYTLDQMVKSSSQRGLNVAACTFCGGFRRKLINGAGREV 156

Query: 118 NATLIMTAHTFDDQLETV 135
           NA  + T H  DD+++T+
Sbjct: 157 NADFVSTGHNLDDEVQTI 174


>gi|322807607|emb|CBZ05182.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum
           H04402 065]
          Length = 249

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 13/192 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76
           I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L    +      +   +  V
Sbjct: 32  IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLDMDLEPLKIFCKKNSIDLV 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +  IA+ V + +  K    L +  R+     +S   K+I AT I   H  DD +ET++
Sbjct: 91  IEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   +    K    S   D    D  + I RP +  R + I+  + + N+   +     D
Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKDLVKKHNLPVVKSTCPED 203

Query: 197 DRFERVRVRRFV 208
            +  R  ++  +
Sbjct: 204 KKTTREEMKNLM 215


>gi|253688694|ref|YP_003017884.1| PP-loop domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259550629|sp|C6DJ78|TTCA_PECCP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|251755272|gb|ACT13348.1| PP-loop domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 28/234 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E    +Y+  +  
Sbjct: 42  IMVCLSGGKDSFTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F   R       P N
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAEARQYPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
              +    +R  ++  +RD D        K++      + +A+  ++P +L  H
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KRYPGRIETMFSAMQNVVPSHLADH 257


>gi|194433858|ref|ZP_03066132.1| protein YdaO [Shigella dysenteriae 1012]
 gi|194417961|gb|EDX34056.1| protein YdaO [Shigella dysenteriae 1012]
 gi|332098106|gb|EGJ03079.1| PP-loop family protein [Shigella dysenteriae 155-74]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|330721907|gb|EGG99859.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium
           IMCC2047]
          Length = 282

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L ++   +    +KF  I+V+   ++    E     Y+  +  
Sbjct: 39  VMVCLSGGKDSYTMLEILRNL---QQHAPVKFDIIAVNLDQKQPGFPEDVLPNYLESIDQ 95

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I     +SVV  K  + +T     +R  R +L    A  I AT I   H  DD +ET
Sbjct: 96  PYFILEKDTYSVVKEKTPEGKTTCALCSRLRRGSLYG-FANEIGATKIALGHHRDDIMET 154

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSF 180
           +++         G  L  M   +L D   N+ I RP   C+  DI++F
Sbjct: 155 LFLNMFH-----GGKLKAMPPKLLSDDKKNVLI-RPLAYCKESDIQTF 196


>gi|218548977|ref|YP_002382768.1| C32 tRNA thiolase [Escherichia fergusonii ATCC 35469]
 gi|254790129|sp|B7LRU9|TTCA_ESCF3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|218356518|emb|CAQ89141.1| putative C32 tRNA thiolase [Escherichia fergusonii ATCC 35469]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHILPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|320653570|gb|EFX21675.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 308

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 39  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 95

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 96  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 154

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 155 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 196


>gi|300822486|ref|ZP_07102625.1| PP-loop family protein [Escherichia coli MS 119-7]
 gi|331677133|ref|ZP_08377829.1| conserved hypothetical protein [Escherichia coli H591]
 gi|300524902|gb|EFK45971.1| PP-loop family protein [Escherichia coli MS 119-7]
 gi|331075822|gb|EGI47120.1| conserved hypothetical protein [Escherichia coli H591]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|332653827|ref|ZP_08419571.1| ExsB family protein [Ruminococcaceae bacterium D16]
 gi|332516913|gb|EGJ46518.1| ExsB family protein [Ruminococcaceae bacterium D16]
          Length = 256

 Score = 41.6 bits (96), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 18/212 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVD--HCLRETAKDEVRYVSDVC 77
           + V VSGG DS+ LL AL  +   R F  I F   AI++D  H       D    V+  C
Sbjct: 24  VAVGVSGGKDSLMLLTALAKL---REFYPIPFEVEAITLDMGHADGRPGMD-FTPVARYC 79

Query: 78  SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             L + ++++  +      + + +    +   + R   +    K    T I   H +DD 
Sbjct: 80  EELGVPYTLIPSEIHHIIFDVRKEKNPCSMCAKMRRGALHNAMKERGITKIALGHHYDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET++M        +G        T L  + +   RP L C  + +R    + ++   E+
Sbjct: 140 VETLFM----SLIFEGRLSCFQPVTWLDRMGITQIRPMLYCGEQMVRHTAQRLDLPVVEN 195

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           P   +   +R  ++  + +++     LK + F
Sbjct: 196 PCPANGNTKRQEIKELIYELNGRYPGLKSRAF 227


>gi|218694920|ref|YP_002402587.1| C32 tRNA thiolase [Escherichia coli 55989]
 gi|254789877|sp|B7L5B2|TTCA_ECO55 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|218351652|emb|CAU97367.1| putative C32 tRNA thiolase [Escherichia coli 55989]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|251789383|ref|YP_003004104.1| C32 tRNA thiolase [Dickeya zeae Ech1591]
 gi|247538004|gb|ACT06625.1| PP-loop domain protein [Dickeya zeae Ech1591]
          Length = 313

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 20/201 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E    +Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F   R       P N
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAEARQFPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDID 212
              +    +R  ++  +RD D
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD 232


>gi|293409739|ref|ZP_06653315.1| C32 tRNA thiolase [Escherichia coli B354]
 gi|291470207|gb|EFF12691.1| C32 tRNA thiolase [Escherichia coli B354]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|15801821|ref|NP_287839.1| C32 tRNA thiolase [Escherichia coli O157:H7 EDL933]
 gi|15831182|ref|NP_309955.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. Sakai]
 gi|74312284|ref|YP_310703.1| C32 tRNA thiolase [Shigella sonnei Ss046]
 gi|168762635|ref|ZP_02787642.1| protein YdaO [Escherichia coli O157:H7 str. EC4501]
 gi|194437000|ref|ZP_03069099.1| protein YdaO [Escherichia coli 101-1]
 gi|209918589|ref|YP_002292673.1| C32 tRNA thiolase [Escherichia coli SE11]
 gi|217329161|ref|ZP_03445241.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14588]
 gi|253773654|ref|YP_003036485.1| C32 tRNA thiolase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161423|ref|YP_003044531.1| C32 tRNA thiolase [Escherichia coli B str. REL606]
 gi|260855043|ref|YP_003228934.1| putative C32 tRNA thiolase [Escherichia coli O26:H11 str. 11368]
 gi|260867792|ref|YP_003234194.1| putative C32 tRNA thiolase [Escherichia coli O111:H- str. 11128]
 gi|293414670|ref|ZP_06657319.1| C32 tRNA thiolase [Escherichia coli B185]
 gi|331662754|ref|ZP_08363677.1| conserved hypothetical protein [Escherichia coli TA143]
 gi|331672873|ref|ZP_08373659.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|81765103|sp|Q8X8Q5|TTCA_ECO57 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123617055|sp|Q3Z194|TTCA_SHISS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790127|sp|B6IA61|TTCA_ECOSE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|12515408|gb|AAG56453.1|AE005371_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361393|dbj|BAB35351.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|73855761|gb|AAZ88468.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|189367043|gb|EDU85459.1| protein YdaO [Escherichia coli O157:H7 str. EC4501]
 gi|194423983|gb|EDX39971.1| protein YdaO [Escherichia coli 101-1]
 gi|209911848|dbj|BAG76922.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|217317600|gb|EEC26028.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14588]
 gi|242377120|emb|CAQ31848.1| predicted C32 tRNA thiolase [Escherichia coli BL21(DE3)]
 gi|253324698|gb|ACT29300.1| PP-loop domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973324|gb|ACT38995.1| predicted C32 tRNA thiolase [Escherichia coli B str. REL606]
 gi|253977537|gb|ACT43207.1| predicted C32 tRNA thiolase [Escherichia coli BL21(DE3)]
 gi|257753692|dbj|BAI25194.1| predicted C32 tRNA thiolase [Escherichia coli O26:H11 str. 11368]
 gi|257764148|dbj|BAI35643.1| predicted C32 tRNA thiolase [Escherichia coli O111:H- str. 11128]
 gi|291434728|gb|EFF07701.1| C32 tRNA thiolase [Escherichia coli B185]
 gi|320180213|gb|EFW55148.1| C32 tRNA thiolase [Shigella boydii ATCC 9905]
 gi|320642614|gb|EFX11862.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O157:H- str. 493-89]
 gi|320647967|gb|EFX16675.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O157:H- str. H 2687]
 gi|323153564|gb|EFZ39815.1| PP-loop family protein [Escherichia coli EPECa14]
 gi|323168226|gb|EFZ53912.1| PP-loop family protein [Shigella sonnei 53G]
 gi|323179692|gb|EFZ65253.1| PP-loop family protein [Escherichia coli 1180]
 gi|323962411|gb|EGB57994.1| ydaO protein [Escherichia coli H489]
 gi|323973546|gb|EGB68731.1| ydaO protein [Escherichia coli TA007]
 gi|326343225|gb|EGD66992.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. 1044]
 gi|331061176|gb|EGI33140.1| conserved hypothetical protein [Escherichia coli TA143]
 gi|331070094|gb|EGI41463.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|332091755|gb|EGI96835.1| PP-loop family protein [Shigella boydii 5216-82]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|300926735|ref|ZP_07142510.1| PP-loop family protein [Escherichia coli MS 182-1]
 gi|300417311|gb|EFK00622.1| PP-loop family protein [Escherichia coli MS 182-1]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|291282439|ref|YP_003499257.1| C32 tRNA thiolase [Escherichia coli O55:H7 str. CB9615]
 gi|290762312|gb|ADD56273.1| C32 tRNA thiolase [Escherichia coli O55:H7 str. CB9615]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|324117461|gb|EGC11367.1| ydaO protein [Escherichia coli E1167]
          Length = 311

 Score = 41.6 bits (96), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|193062617|ref|ZP_03043711.1| protein YdaO [Escherichia coli E22]
 gi|293433707|ref|ZP_06662135.1| C32 tRNA thiolase [Escherichia coli B088]
 gi|192931739|gb|EDV84339.1| protein YdaO [Escherichia coli E22]
 gi|284921219|emb|CBG34285.1| conserved hypothetical protein [Escherichia coli 042]
 gi|291324526|gb|EFE63948.1| C32 tRNA thiolase [Escherichia coli B088]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|300904997|ref|ZP_07122815.1| PP-loop family protein [Escherichia coli MS 84-1]
 gi|301305839|ref|ZP_07211924.1| PP-loop family protein [Escherichia coli MS 124-1]
 gi|300403146|gb|EFJ86684.1| PP-loop family protein [Escherichia coli MS 84-1]
 gi|300838929|gb|EFK66689.1| PP-loop family protein [Escherichia coli MS 124-1]
 gi|315254387|gb|EFU34355.1| PP-loop family protein [Escherichia coli MS 85-1]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|325958250|ref|YP_004289716.1| hypothetical protein Metbo_0492 [Methanobacterium sp. AL-21]
 gi|325329682|gb|ADZ08744.1| protein of unknown function UPF0021 [Methanobacterium sp. AL-21]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 17/130 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS+ +L+ + S L +R  G I   A+++D  +    ++ V        +  
Sbjct: 52  VLLGLSGGKDSV-MLLDILSTLKNR--GIIDLVAVTIDEGIEGYREEGVELAIKNAEKYG 108

Query: 82  IAHSVVSWK-------NSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHT 127
           + H VVS+K       +   Q   +   R A       R  + +  +K + AT I T H 
Sbjct: 109 VEHRVVSFKQYFGTTLDKIIQNNSLDVRRNACTYCGVFRRWIFNRVSKEVGATKIATGHN 168

Query: 128 FDDQLETVYM 137
            DD+ +++ M
Sbjct: 169 LDDETQSIVM 178


>gi|212712036|ref|ZP_03320164.1| hypothetical protein PROVALCAL_03112 [Providencia alcalifaciens DSM
           30120]
 gi|212685558|gb|EEB45086.1| hypothetical protein PROVALCAL_03112 [Providencia alcalifaciens DSM
           30120]
          Length = 304

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  LL  L ++   +    I FS ++V+   ++    E     Y+ ++  
Sbjct: 37  IMVCLSGGKDSYTLLSILQNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEELGV 93

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  I AT I   H  DD L+T
Sbjct: 94  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATEIGATKIALGHHRDDILQT 152

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  +
Sbjct: 153 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERY 194


>gi|37526466|ref|NP_929810.1| C32 tRNA thiolase [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81419231|sp|Q7N3Y7|TTCA_PHOLL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|36785897|emb|CAE14949.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 306

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  LL  L ++   +    + FS ++V+   ++    E     Y+ ++  
Sbjct: 39  IMVCLSGGKDSYTLLSILQNL---QKSAPVNFSLVAVNLDQKQPGFPEHILPAYLGELGV 95

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 96  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 154

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  +
Sbjct: 155 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERY 196


>gi|16129305|ref|NP_415860.1| tRNA 2-thiocytidine biosynthesis protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89108192|ref|AP_001972.1| predicted C32 tRNA thiolase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170081023|ref|YP_001730343.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238900579|ref|YP_002926375.1| putative C32 tRNA thiolase [Escherichia coli BW2952]
 gi|301022681|ref|ZP_07186534.1| PP-loop family protein [Escherichia coli MS 196-1]
 gi|2495598|sp|P76055|TTCA_ECOLI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830582|sp|B1XCH3|TTCA_ECODH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|259550623|sp|C4ZV92|TTCA_ECOBW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|1787606|gb|AAC74426.1| tRNA 2-thiocytidine biosynthesis protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85674916|dbj|BAE76407.1| predicted C32 tRNA thiolase [Escherichia coli str. K12 substr.
           W3110]
 gi|169888858|gb|ACB02565.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238862182|gb|ACR64180.1| predicted C32 tRNA thiolase [Escherichia coli BW2952]
 gi|260449521|gb|ACX39943.1| PP-loop domain protein [Escherichia coli DH1]
 gi|299881169|gb|EFI89380.1| PP-loop family protein [Escherichia coli MS 196-1]
 gi|315135985|dbj|BAJ43144.1| C32 tRNA thiolase [Escherichia coli DH1]
 gi|323937670|gb|EGB33938.1| ydaO protein [Escherichia coli E1520]
 gi|323942291|gb|EGB38462.1| ydaO protein [Escherichia coli E482]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|307137986|ref|ZP_07497342.1| C32 tRNA thiolase [Escherichia coli H736]
 gi|331641911|ref|ZP_08343046.1| conserved hypothetical protein [Escherichia coli H736]
 gi|331038709|gb|EGI10929.1| conserved hypothetical protein [Escherichia coli H736]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|170754445|ref|YP_001782920.1| PP-loop family protein [Clostridium botulinum B1 str. Okra]
 gi|169119657|gb|ACA43493.1| PP-loop family protein [Clostridium botulinum B1 str. Okra]
          Length = 249

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 13/192 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76
           I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L    +      +   +  V
Sbjct: 32  IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLNMDLEPLKIFCKKNSIDLV 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +  IA+ V + +  K    L +  R+     +S   K+I AT I   H  DD +ET++
Sbjct: 91  IEKNNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   +    K    S   D    D  + I RP +  R + I+  + + N+   +     D
Sbjct: 148 MNVLK--IGKFGSFSPHID--YKDKYVHIIRPLIYLREDLIKDLVKKHNLPVVKSTCPED 203

Query: 197 DRFERVRVRRFV 208
            +  R  ++  +
Sbjct: 204 KKTTREEMKNLM 215


>gi|320189894|gb|EFW64546.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC1212]
 gi|320637248|gb|EFX07074.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O157:H7 str. G5101]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|301326916|ref|ZP_07220210.1| PP-loop family protein [Escherichia coli MS 78-1]
 gi|300846468|gb|EFK74228.1| PP-loop family protein [Escherichia coli MS 78-1]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|218700064|ref|YP_002407693.1| C32 tRNA thiolase [Escherichia coli IAI39]
 gi|254790123|sp|B7NHP6|TTCA_ECO7I RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|218370050|emb|CAR17826.1| putative C32 tRNA thiolase [Escherichia coli IAI39]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|157159153|ref|YP_001462653.1| C32 tRNA thiolase [Escherichia coli E24377A]
 gi|157160856|ref|YP_001458174.1| C32 tRNA thiolase [Escherichia coli HS]
 gi|168749012|ref|ZP_02774034.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4113]
 gi|168756029|ref|ZP_02781036.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168769430|ref|ZP_02794437.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4486]
 gi|168775173|ref|ZP_02800180.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4196]
 gi|168782878|ref|ZP_02807885.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4076]
 gi|168788326|ref|ZP_02813333.1| PP-loop family protein [Escherichia coli O157:H7 str. EC869]
 gi|168799658|ref|ZP_02824665.1| PP-loop family protein [Escherichia coli O157:H7 str. EC508]
 gi|170020290|ref|YP_001725244.1| C32 tRNA thiolase [Escherichia coli ATCC 8739]
 gi|188491839|ref|ZP_02999109.1| PP-loop family protein [Escherichia coli 53638]
 gi|191165079|ref|ZP_03026923.1| PP-loop family protein [Escherichia coli B7A]
 gi|193066928|ref|ZP_03047897.1| PP-loop family protein [Escherichia coli E110019]
 gi|194426010|ref|ZP_03058566.1| PP-loop family protein [Escherichia coli B171]
 gi|195938013|ref|ZP_03083395.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC4024]
 gi|208810905|ref|ZP_03252738.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208815195|ref|ZP_03256374.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208820138|ref|ZP_03260458.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209398638|ref|YP_002270404.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4115]
 gi|218553904|ref|YP_002386817.1| C32 tRNA thiolase [Escherichia coli IAI1]
 gi|218704864|ref|YP_002412383.1| C32 tRNA thiolase [Escherichia coli UMN026]
 gi|254792939|ref|YP_003077776.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14359]
 gi|256018402|ref|ZP_05432267.1| C32 tRNA thiolase [Shigella sp. D9]
 gi|260843692|ref|YP_003221470.1| putative C32 tRNA thiolase [Escherichia coli O103:H2 str. 12009]
 gi|261224338|ref|ZP_05938619.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|293404873|ref|ZP_06648865.1| C32 tRNA thiolase [Escherichia coli FVEC1412]
 gi|298380517|ref|ZP_06990116.1| C32 tRNA thiolase [Escherichia coli FVEC1302]
 gi|300900109|ref|ZP_07118303.1| PP-loop family protein [Escherichia coli MS 198-1]
 gi|300927859|ref|ZP_07143421.1| PP-loop family protein [Escherichia coli MS 187-1]
 gi|300937577|ref|ZP_07152391.1| PP-loop family protein [Escherichia coli MS 21-1]
 gi|309797092|ref|ZP_07691490.1| PP-loop family protein [Escherichia coli MS 145-7]
 gi|312971542|ref|ZP_07785717.1| PP-loop family protein [Escherichia coli 1827-70]
 gi|331667743|ref|ZP_08368607.1| conserved hypothetical protein [Escherichia coli TA271]
 gi|331682839|ref|ZP_08383458.1| conserved hypothetical protein [Escherichia coli H299]
 gi|332279456|ref|ZP_08391869.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Shigella sp. D9]
 gi|205830581|sp|A7ZLH4|TTCA_ECO24 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830583|sp|A7ZZT7|TTCA_ECOHS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830585|sp|B1ISR7|TTCA_ECOLC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254789878|sp|B5Z0R4|TTCA_ECO5E RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790125|sp|B7LYL5|TTCA_ECO8A RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790126|sp|B7N4F3|TTCA_ECOLU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|121486021|gb|ABM54890.1| ATPase [Escherichia coli]
 gi|157066536|gb|ABV05791.1| PP-loop family protein [Escherichia coli HS]
 gi|157081183|gb|ABV20891.1| PP-loop family protein [Escherichia coli E24377A]
 gi|169755218|gb|ACA77917.1| PP-loop domain protein [Escherichia coli ATCC 8739]
 gi|187769348|gb|EDU33192.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188016561|gb|EDU54683.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4113]
 gi|188487038|gb|EDU62141.1| PP-loop family protein [Escherichia coli 53638]
 gi|188999726|gb|EDU68712.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189356826|gb|EDU75245.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189361597|gb|EDU80016.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4486]
 gi|189371828|gb|EDU90244.1| PP-loop family protein [Escherichia coli O157:H7 str. EC869]
 gi|189377987|gb|EDU96403.1| PP-loop family protein [Escherichia coli O157:H7 str. EC508]
 gi|190904851|gb|EDV64556.1| PP-loop family protein [Escherichia coli B7A]
 gi|192959518|gb|EDV89952.1| PP-loop family protein [Escherichia coli E110019]
 gi|194416065|gb|EDX32331.1| PP-loop family protein [Escherichia coli B171]
 gi|208724411|gb|EDZ74119.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208731843|gb|EDZ80531.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208740261|gb|EDZ87943.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160038|gb|ACI37471.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4115]
 gi|218360672|emb|CAQ98233.1| putative C32 tRNA thiolase [Escherichia coli IAI1]
 gi|218431961|emb|CAR12846.1| putative C32 tRNA thiolase [Escherichia coli UMN026]
 gi|254592339|gb|ACT71700.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli
           O157:H7 str. TW14359]
 gi|257758839|dbj|BAI30336.1| predicted C32 tRNA thiolase [Escherichia coli O103:H2 str. 12009]
 gi|291427081|gb|EFF00108.1| C32 tRNA thiolase [Escherichia coli FVEC1412]
 gi|298277959|gb|EFI19473.1| C32 tRNA thiolase [Escherichia coli FVEC1302]
 gi|300356388|gb|EFJ72258.1| PP-loop family protein [Escherichia coli MS 198-1]
 gi|300457385|gb|EFK20878.1| PP-loop family protein [Escherichia coli MS 21-1]
 gi|300464144|gb|EFK27637.1| PP-loop family protein [Escherichia coli MS 187-1]
 gi|308119262|gb|EFO56524.1| PP-loop family protein [Escherichia coli MS 145-7]
 gi|310336139|gb|EFQ01339.1| PP-loop family protein [Escherichia coli 1827-70]
 gi|315619432|gb|EFU99976.1| PP-loop family protein [Escherichia coli 3431]
 gi|320199385|gb|EFW73976.1| C32 tRNA thiolase [Escherichia coli EC4100B]
 gi|323162443|gb|EFZ48295.1| PP-loop family protein [Escherichia coli E128010]
 gi|323185488|gb|EFZ70849.1| PP-loop family protein [Escherichia coli 1357]
 gi|323947686|gb|EGB43689.1| PP-loop family protein [Escherichia coli H120]
 gi|324021226|gb|EGB90445.1| PP-loop family protein [Escherichia coli MS 117-3]
 gi|326340987|gb|EGD64780.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. 1125]
 gi|331065328|gb|EGI37223.1| conserved hypothetical protein [Escherichia coli TA271]
 gi|331080470|gb|EGI51649.1| conserved hypothetical protein [Escherichia coli H299]
 gi|332101808|gb|EGJ05154.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Shigella sp. D9]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|256022942|ref|ZP_05436807.1| C32 tRNA thiolase [Escherichia sp. 4_1_40B]
 gi|300948430|ref|ZP_07162532.1| PP-loop family protein [Escherichia coli MS 116-1]
 gi|300954598|ref|ZP_07167043.1| PP-loop family protein [Escherichia coli MS 175-1]
 gi|301647155|ref|ZP_07246976.1| PP-loop family protein [Escherichia coli MS 146-1]
 gi|300318432|gb|EFJ68216.1| PP-loop family protein [Escherichia coli MS 175-1]
 gi|300452054|gb|EFK15674.1| PP-loop family protein [Escherichia coli MS 116-1]
 gi|301074641|gb|EFK89447.1| PP-loop family protein [Escherichia coli MS 146-1]
 gi|332343043|gb|AEE56377.1| C32 tRNA thiolase [Escherichia coli UMNK88]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|307309897|ref|ZP_07589547.1| PP-loop domain protein [Escherichia coli W]
 gi|306909615|gb|EFN40109.1| PP-loop domain protein [Escherichia coli W]
 gi|315060598|gb|ADT74925.1| predicted C32 tRNA thiolase [Escherichia coli W]
 gi|323378839|gb|ADX51107.1| PP-loop domain protein [Escherichia coli KO11]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|260768432|ref|ZP_05877366.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio furnissii CIP
           102972]
 gi|260616462|gb|EEX41647.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio furnissii CIP
           102972]
 gi|315180143|gb|ADT87057.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Vibrio furnissii NCTC 11218]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 15/163 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I FS I+V+   ++    E     Y++ +  
Sbjct: 43  IMVCLSGGKDSFTMLEILMSL---QKSAPISFSLIAVNLDQKQPGFPEHILPEYLASLGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H  DD +ET
Sbjct: 100 EYKIVEEDTYSIVQDKVPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHHRDDIIET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +++        KGM    + D   +     + RP   CR +DI
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|57241883|ref|ZP_00369823.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57017075|gb|EAL53856.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 322

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 18/191 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSDVCSR 79
           L+A S GSDS  L   L           + F    +++  R+ +   ++E R ++     
Sbjct: 16  LLAFSYGSDSTALFYLLER-------ENVIFDMALINYKTRQNSDLEEEEARLLAK---- 64

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R    +      + +      AR+ RYA   +         ++ AH  +D  E   M  
Sbjct: 65  -RFHKQIFIQTAPRFKGNFEKNARDFRYAFFEKICIEEGYENLILAHQLNDLFEWFLM-- 121

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           Q       M L GM        N  + RP L   +E I +FL +  + + +D SN D +F
Sbjct: 122 QLSKGAGAMELLGM-SAFEKRENYTLIRPLLNVTKEQILAFLRENKLKYFDDESNKDLKF 180

Query: 200 ERVRVRRFVRD 210
           +R  +R    D
Sbjct: 181 KRNFIREHFSD 191


>gi|329577263|gb|EGG58727.1| PP-loop family protein [Enterococcus faecalis TX1467]
          Length = 119

 Score = 41.2 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  C +  
Sbjct: 56  IVVAVSGGVDSMALLTLMEQVAEKE---QLQLVVAHVNHQLREASAQEAQYLATYCQQRE 112

Query: 82  IAH 84
           + +
Sbjct: 113 LTY 115


>gi|324113197|gb|EGC07172.1| C32 tRNA thiolase [Escherichia fergusonii B253]
 gi|325497404|gb|EGC95263.1| C32 tRNA thiolase [Escherichia fergusonii ECD227]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHILPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|324006197|gb|EGB75416.1| PP-loop family protein [Escherichia coli MS 57-2]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|261257408|ref|ZP_05949941.1| putative C32 tRNA thiolase [Escherichia coli O157:H7 str. FRIK966]
          Length = 295

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|70997431|ref|XP_753463.1| PP-loop family protein [Aspergillus fumigatus Af293]
 gi|66851099|gb|EAL91425.1| PP-loop family protein [Aspergillus fumigatus Af293]
          Length = 709

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 21/149 (14%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL-RI 82
           +AVSGG+DSM L      +        +  +A  VDH  RE +  E R V+   S + + 
Sbjct: 100 LAVSGGTDSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARTVATWLSDMGKP 159

Query: 83  AHSVVSWKNSKPQTGLMAA------------------AREARYALISEHAKTINATLIMT 124
              +V+   +   TGL A                   AR  R+  +    +    + ++ 
Sbjct: 160 DDDLVNSPGTNSHTGLQAQILALEWPQGSSVSAFETHARRLRFQALGIACRDRRISALLM 219

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGM 153
            H  DD +ET   R       +G GL+G+
Sbjct: 220 GHHQDDNVETTLWR--LCTGARGAGLAGI 246


>gi|124485791|ref|YP_001030407.1| hypothetical protein Mlab_0970 [Methanocorpusculum labreanum Z]
 gi|124363332|gb|ABN07140.1| PP-loop domain protein [Methanocorpusculum labreanum Z]
          Length = 300

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS  LL  L  +  D      +   I+VD  +     D +   + +C +L 
Sbjct: 52  IAVGLSGGKDSTVLLTVLAKLDLD-----AELIPITVDEGIGGYRDDTILAATRLCDKLG 106

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +A  +VS+ +           + P+          R AL ++ A+ + AT I T H  DD
Sbjct: 107 LADRLVSFTDICGKTLDELLSNDPRQACSVCGTLRRRAL-NQAAREVGATKIATGHCLDD 165

Query: 131 QLETVYM 137
           + ++V M
Sbjct: 166 EAQSVLM 172


>gi|91210638|ref|YP_540624.1| C32 tRNA thiolase [Escherichia coli UTI89]
 gi|218558331|ref|YP_002391244.1| C32 tRNA thiolase [Escherichia coli S88]
 gi|237705374|ref|ZP_04535855.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Escherichia sp.
           3_2_53FAA]
 gi|122423840|sp|Q1RC21|TTCA_ECOUT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254789876|sp|B7MM21|TTCA_ECO45 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|91072212|gb|ABE07093.1| hypothetical protein YdaO [Escherichia coli UTI89]
 gi|218365100|emb|CAR02807.1| putative C32 tRNA thiolase [Escherichia coli S88]
 gi|226900131|gb|EEH86390.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Escherichia sp.
           3_2_53FAA]
 gi|294492177|gb|ADE90933.1| PP-loop family protein [Escherichia coli IHE3034]
 gi|307627082|gb|ADN71386.1| C32 tRNA thiolase [Escherichia coli UM146]
 gi|315289077|gb|EFU48475.1| PP-loop family protein [Escherichia coli MS 110-3]
 gi|323949053|gb|EGB44945.1| ydaO protein [Escherichia coli H252]
 gi|323956905|gb|EGB52637.1| ydaO protein [Escherichia coli H263]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|26247680|ref|NP_753720.1| C32 tRNA thiolase [Escherichia coli CFT073]
 gi|110641578|ref|YP_669308.1| C32 tRNA thiolase [Escherichia coli 536]
 gi|191170922|ref|ZP_03032473.1| protein YdaO [Escherichia coli F11]
 gi|218689334|ref|YP_002397546.1| C32 tRNA thiolase [Escherichia coli ED1a]
 gi|227886219|ref|ZP_04004024.1| PP-loop superfamily ATPase MesJ [Escherichia coli 83972]
 gi|300971603|ref|ZP_07171514.1| PP-loop family protein [Escherichia coli MS 45-1]
 gi|300972036|ref|ZP_07171796.1| PP-loop family protein [Escherichia coli MS 200-1]
 gi|301046193|ref|ZP_07193366.1| PP-loop family protein [Escherichia coli MS 185-1]
 gi|331646675|ref|ZP_08347778.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331657398|ref|ZP_08358360.1| conserved hypothetical protein [Escherichia coli TA206]
 gi|81476555|sp|Q8FHP6|TTCA_ECOL6 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123344045|sp|Q0TI22|TTCA_ECOL5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790124|sp|B7MUI7|TTCA_ECO81 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|26108082|gb|AAN80282.1|AE016760_141 Hypothetical protein ydaO [Escherichia coli CFT073]
 gi|27526304|emb|CAD42727.1| YdaO protein [Escherichia coli]
 gi|110343170|gb|ABG69407.1| hypothetical protein YdaO [Escherichia coli 536]
 gi|190908654|gb|EDV68242.1| protein YdaO [Escherichia coli F11]
 gi|218426898|emb|CAR07753.2| putative C32 tRNA thiolase [Escherichia coli ED1a]
 gi|222033148|emb|CAP75888.1| UPF0021 protein ydaO [Escherichia coli LF82]
 gi|227836423|gb|EEJ46889.1| PP-loop superfamily ATPase MesJ [Escherichia coli 83972]
 gi|281178535|dbj|BAI54865.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|300301802|gb|EFJ58187.1| PP-loop family protein [Escherichia coli MS 185-1]
 gi|300309258|gb|EFJ63778.1| PP-loop family protein [Escherichia coli MS 200-1]
 gi|300411217|gb|EFJ94755.1| PP-loop family protein [Escherichia coli MS 45-1]
 gi|307553406|gb|ADN46181.1| PP-loop family protein [Escherichia coli ABU 83972]
 gi|312945980|gb|ADR26807.1| C32 tRNA thiolase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315295394|gb|EFU54724.1| PP-loop family protein [Escherichia coli MS 153-1]
 gi|315297175|gb|EFU56455.1| PP-loop family protein [Escherichia coli MS 16-3]
 gi|320195642|gb|EFW70267.1| C32 tRNA thiolase [Escherichia coli WV_060327]
 gi|323187578|gb|EFZ72887.1| PP-loop family protein [Escherichia coli RN587/1]
 gi|324011375|gb|EGB80594.1| PP-loop family protein [Escherichia coli MS 60-1]
 gi|331045427|gb|EGI17554.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331055646|gb|EGI27655.1| conserved hypothetical protein [Escherichia coli TA206]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|330911208|gb|EGH39718.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Escherichia coli AA86]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|323977023|gb|EGB72110.1| ydaO protein [Escherichia coli TW10509]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGI 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|117623596|ref|YP_852509.1| C32 tRNA thiolase [Escherichia coli APEC O1]
 gi|205830584|sp|A1AAV5|TTCA_ECOK1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|115512720|gb|ABJ00795.1| hypothetical protein YdaO [Escherichia coli APEC O1]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|13541276|ref|NP_110964.1| ATPase [Thermoplasma volcanium GSS1]
          Length = 309

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 13/127 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS   L  LH +L +R   KIK  A +VD  +       +     +C+ L 
Sbjct: 51  ISVALSGGKDSSVTLFLLHKILGNRKNMKIK--AFTVDEGIDGYRPSGLESAKRLCTSLG 108

Query: 82  IAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           I H  +S+ +S            P     A     R  LI+E A   +A  +      DD
Sbjct: 109 IDHETISFYDSYGLTLDSIVKTNPVKIPCAYCGPLRRKLINEMADKQDADYVALGLNLDD 168

Query: 131 QLETVYM 137
             +++ M
Sbjct: 169 YSQSILM 175


>gi|14324659|dbj|BAB59586.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 13/127 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS   L  LH +L +R   KIK  A +VD  +       +     +C+ L 
Sbjct: 54  ISVALSGGKDSSVTLFLLHKILGNRKNMKIK--AFTVDEGIDGYRPSGLESAKRLCTSLG 111

Query: 82  IAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           I H  +S+ +S            P     A     R  LI+E A   +A  +      DD
Sbjct: 112 IDHETISFYDSYGLTLDSIVKTNPVKIPCAYCGPLRRKLINEMADKQDADYVALGLNLDD 171

Query: 131 QLETVYM 137
             +++ M
Sbjct: 172 YSQSILM 178


>gi|157145670|ref|YP_001452989.1| C32 tRNA thiolase [Citrobacter koseri ATCC BAA-895]
 gi|205830573|sp|A8AGE0|TTCA_CITK8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|157082875|gb|ABV12553.1| hypothetical protein CKO_01418 [Citrobacter koseri ATCC BAA-895]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E     Y+ ++  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPEYLENLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|326389916|ref|ZP_08211479.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993976|gb|EGD52405.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 30/204 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77
           I V VSGG DS+ LL  LH +   ++F  +KF  + +   L     D    V + C    
Sbjct: 24  IAVGVSGGKDSITLLYGLHLL---KNFYPVKFDVMGLMLTLGYDNFDPTP-VENFCREKG 79

Query: 78  -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                    I   V  ++  +    L A  R      ++  AK      +  AH +DD +
Sbjct: 80  IPFFIKETDIKKIVFDYRKEENPCSLCANLRR---GALNNFAKEKGCNKVALAHHYDDLI 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +T  M          +  +G   T      L    + + RP +  + +DIRS + + N+ 
Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLP 187

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211
             ++P   +   +R  +R  + D+
Sbjct: 188 VVKNPCPVEGHTKRHYIRNLIIDL 211


>gi|170759818|ref|YP_001788613.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169406807|gb|ACA55218.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 249

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 11/123 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSD 75
           I VAVSGG DS+ LL  L  + L+D     I+  AI VD  L    +      +   V  
Sbjct: 32  IAVAVSGGKDSIFLLFCLKLIQLTD--IKDIEIVAIHVDLGLDMDLEPLKIFCKKNSVDL 89

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           V  +  IA+ V + +  K    L +  ++     IS   K+I AT I   H  DD +ET+
Sbjct: 90  VIEKTNIANVVFNERKEKNPCSLCSKLKKGCLVRIS---KSIGATKIALGHNCDDVIETL 146

Query: 136 YMR 138
           +M 
Sbjct: 147 FMN 149


>gi|323964520|gb|EGB59995.1| ydaO protein [Escherichia coli M863]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGI 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|293396003|ref|ZP_06640284.1| PP-loop family protein [Serratia odorifera DSM 4582]
 gi|291421501|gb|EFE94749.1| PP-loop family protein [Serratia odorifera DSM 4582]
          Length = 312

 Score = 41.2 bits (95), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 15/170 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS I+V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLIAVNLDQKQPGFPEHILPAYLDGLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           +++        KGM    M D    D    + RP   CR +DI  F + +
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAIAK 203


>gi|260778673|ref|ZP_05887565.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604837|gb|EEX31132.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 310

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 46/243 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L S+   +    I FS I+V+          H L E       
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPINFSLIAVNLDQKQPGFPGHILPE------- 92

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   A  + AT I   H 
Sbjct: 93  YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSR-LRRGILYRTANELGATKIALGHH 151

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-- 185
            DD LET+++        KGM    + D   +     + RP   CR +DI  F   R   
Sbjct: 152 RDDILETLFLNMFHGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDIIKFSDMRGYP 207

Query: 186 ---ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
               + C    N     +R  +++ + D D        K+F      +  A+  ++P +L
Sbjct: 208 IIPCNLCGSQPN----LQRQNIKQMLNDWD--------KRFPGRIESMFRAMQNVVPSHL 255

Query: 243 TVH 245
             H
Sbjct: 256 ADH 258


>gi|170683989|ref|YP_001743832.1| C32 tRNA thiolase [Escherichia coli SMS-3-5]
 gi|205830586|sp|B1LG84|TTCA_ECOSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|170521707|gb|ACB19885.1| PP-loop family protein [Escherichia coli SMS-3-5]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLETLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|215486638|ref|YP_002329069.1| C32 tRNA thiolase [Escherichia coli O127:H6 str. E2348/69]
 gi|312966725|ref|ZP_07780943.1| PP-loop family protein [Escherichia coli 2362-75]
 gi|254789875|sp|B7URE9|TTCA_ECO27 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|215264710|emb|CAS09084.1| predicted C32 tRNA thiolase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288189|gb|EFR16091.1| PP-loop family protein [Escherichia coli 2362-75]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|307267037|ref|ZP_07548552.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917962|gb|EFN48221.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 235

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 30/204 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77
           I V VSGG DS+ LL  LH +   ++F  +KF  + +   L     D    V + C    
Sbjct: 24  IAVGVSGGKDSITLLYGLHLL---KNFYPVKFDVMGLMLTLGYDNFDPTP-VENFCREKG 79

Query: 78  -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                    I   V  ++  +    L A  R      ++  AK      +  AH +DD +
Sbjct: 80  IPFFIKETDIKKIVFDYRKEENPCSLCANLRR---GALNNFAKEKGCNKVALAHHYDDLI 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +T  M          +  +G   T      L    + + RP +  + +DIRS + + N+ 
Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLP 187

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211
             ++P   +   +R  +R  + D+
Sbjct: 188 VVKNPCPVEGHTKRHYIRNLIIDL 211


>gi|292669438|ref|ZP_06602864.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648891|gb|EFF66863.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 465

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 115/279 (41%), Gaps = 42/279 (15%)

Query: 16  LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYV 73
           L YP   +LVA SGG+DS+     L ++    + G  +      +H +R   +  + R+V
Sbjct: 18  LFYPVRKLLVACSGGTDSL---ALLDALDILHTAGGAQLICAHYEHGIRGADSLADARFV 74

Query: 74  SDVCSRLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
              C+   I     A  V ++     +  L  AAR  RY  +           I+ AH  
Sbjct: 75  EAFCAMRGIPFVLEAGDVPAYARMH-KCSLETAARICRYDFLYRVCDERKCDAIVLAHHA 133

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD  ETV MR  R     G G +G+      D  L++ RP L   R ++ ++ ++R +  
Sbjct: 134 DDLAETVLMRILR-----GTGPAGLAAMRERD-GLYL-RPLLTVMRAEVEAYAVKRGLMP 186

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             D +N      R R+R        H L  ++ +  +    V +A+  L          S
Sbjct: 187 RHDATNDAMDARRNRIR--------HELLPELARTYN--PAVRDALTRL----------S 226

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            +A  +D L  +     Y    + A+C G +S+P  R++
Sbjct: 227 ALAAEEDDLLAELAEDAY----THALCVGGLSIPALRAL 261


>gi|261821855|ref|YP_003259961.1| C32 tRNA thiolase [Pectobacterium wasabiae WPP163]
 gi|261605868|gb|ACX88354.1| PP-loop domain protein [Pectobacterium wasabiae WPP163]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 24/203 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E    +Y+  +  
Sbjct: 42  IMVCLSGGKDSFTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-----ISWC 189
           +++        KGM    M D    D    + RP   CR +DI  F   R       + C
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARQYPIIPCNLC 213

Query: 190 EDPSNTDDRFERVRVRRFVRDID 212
               N     +R  ++  +RD D
Sbjct: 214 GSQPN----LQRQVIKDMLRDWD 232


>gi|197285222|ref|YP_002151094.1| C32 tRNA thiolase [Proteus mirabilis HI4320]
 gi|227355648|ref|ZP_03840042.1| PP-loop superfamily ATPase MesJ [Proteus mirabilis ATCC 29906]
 gi|194682709|emb|CAR42884.1| conserved hypothetical protein [Proteus mirabilis HI4320]
 gi|227164255|gb|EEI49148.1| PP-loop superfamily ATPase MesJ [Proteus mirabilis ATCC 29906]
          Length = 306

 Score = 41.2 bits (95), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 20/201 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V +SGG DS  LL  L ++   +    I+FS I+V+   ++    E   + +   +L 
Sbjct: 37  IMVCLSGGKDSYTLLSILMNL---QKSAPIQFSLIAVNLDQKQPGFPE-HILPEYLEQLG 92

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +V          ++   +         R  ++   A  + AT I   H  DD LET
Sbjct: 93  VEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATEVGATKIALGHHRDDILET 152

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP    R +DI  F   +N      P N
Sbjct: 153 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYAREKDIERFAQAKNFPII--PCN 206

Query: 195 ---TDDRFERVRVRRFVRDID 212
              +    +R  ++  +RD D
Sbjct: 207 LCGSQPNLQRQVIKEMLRDWD 227


>gi|167770401|ref|ZP_02442454.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM
           17241]
 gi|167667408|gb|EDS11538.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM
           17241]
          Length = 236

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 26/219 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRY--VSDVC 77
           + V VSGG DS+ LL  L  V   R F  I F+  AI++D+   +    E  Y  ++ +C
Sbjct: 24  VAVGVSGGKDSVALLAGLAGV---RRFIGISFTLKAITLDN---QFGGIETDYGPIAALC 77

Query: 78  SRLR---------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            RL          I   +   +N      L A     R  L+ + AKT     I   H +
Sbjct: 78  ERLGVEYILKRTDIGRIIFDERNESNPCSLCA---RMRRGLLHDTAKTNGCNKIALGHHY 134

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D +ET  M     + E  +G      T L   +L + RP +     +IR+ + +  +  
Sbjct: 135 NDAVETFLMNL---FNEGRIGCFSPV-TYLSRKDLTMVRPLVFATEREIRNAVNRAGLPV 190

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +     D   ER   + F+ D++ +   +  + F  +R
Sbjct: 191 VKSACPVDGCTERQWTKEFLYDMEKNHPGITKRIFGAMR 229


>gi|119477118|ref|ZP_01617354.1| tRNA(Ile)-lysidine synthase [marine gamma proteobacterium HTCC2143]
 gi|119449481|gb|EAW30719.1| tRNA(Ile)-lysidine synthase [marine gamma proteobacterium HTCC2143]
          Length = 446

 Score = 41.2 bits (95), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 11/180 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS  LL  L  V            A+ ++H L+  ++   ++     + L I
Sbjct: 28  LVAYSGGVDSCVLLDCLIGVAD-----HPPIVAVHINHQLQAASEQWRKHCEKRAAALNI 82

Query: 83  AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           A   +    +      L  AAR ARY       +  +  ++   H  DDQ+ET+ +R  R
Sbjct: 83  AIICIDVDVDLHSGRSLEDAARVARYDAFETIVR--HDDVLFFGHHLDDQVETMLLRLLR 140

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G         +       ++RP L   R  I ++     + W +D SN    F+R
Sbjct: 141 GSGSRGAAAMPSSRALGSGQ---LARPLLDIPRSAIETYATINQLEWIDDSSNQSLDFDR 197


>gi|332977368|gb|EGK14150.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Psychrobacter sp. 1501(2011)]
          Length = 523

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 81/187 (43%), Gaps = 27/187 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79
           I +A SGG DS+ L      +      GK+ F    + V+H +++        VS+   +
Sbjct: 27  IWLACSGGRDSLSLAHLCQQLFE---AGKLPFLPQLLHVNHGMQQANDIWAEQVSNWAKQ 83

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V+     K        AR+ARY  +       N  LI+  H  DDQ+ET+ MR 
Sbjct: 84  NQMPCRVLEIDLVKKTE---QEARQARYEAMM-GVMNHNDVLIL-GHHQDDQVETLLMRL 138

Query: 140 QRDYAEKGM-GLSGMCD-----TILYD------LNLWISRPFLRCRREDIRSFLLQRNIS 187
              +   G  GLSGM +     ++  D      + LW  RP L   RE I  +     ++
Sbjct: 139 ---FNGAGANGLSGMKEWSTKQSMANDYRCQKSIVLW--RPLLSVSREQITEYANHNQLA 193

Query: 188 WCEDPSN 194
           + +DP+N
Sbjct: 194 YIDDPTN 200


>gi|327254039|gb|EGE65668.1| PP-loop family protein [Escherichia coli STEC_7v]
          Length = 311

 Score = 41.2 bits (95), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGI 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|11465849|ref|NP_053993.1| hypothetical protein PopuCp198 [Porphyra purpurea]
 gi|1723412|sp|P51383|TILS_PORPU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1276849|gb|AAC08269.1| ORF327 [Porphyra purpurea]
          Length = 327

 Score = 41.2 bits (95), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 8/183 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS+ L+  L+ +     F + + + I  DH  R    D +     V S  R  
Sbjct: 29  VAFSGGQDSLTLVKLLYDL---NPFYRWRITLIHFDHRWRW---DSMLASKQVFSFARYY 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           +  + +           A+R+ RY  + + A   N T I+ AHT  D  ET+     R  
Sbjct: 83  NFPLYYFECPDYLNTEEASRKWRYTTLIDLAVKNNFTKILLAHTATDSSETLLSNLFRGT 142

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
           +  G+   G    +    +++I RP L   R +   F  +  +    D SN D    R R
Sbjct: 143 SLDGLASIGWSCQL--AQSVYIVRPLLNFYRFETSWFCRKYYLPIWVDRSNYDYIMFRNR 200

Query: 204 VRR 206
           +R+
Sbjct: 201 LRQ 203


>gi|326795425|ref|YP_004313245.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Marinomonas
           mediterranea MMB-1]
 gi|326546189|gb|ADZ91409.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Marinomonas
           mediterranea MMB-1]
          Length = 278

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 17/167 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L   L+ ++   I+F  ++V+   ++    E    +Y+ D+  
Sbjct: 40  VMVCLSGGKDSYTMLEIL---LNLQASAPIEFEIVAVNLDQKQPGFPEHILPKYLEDIGV 96

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I     +S+V     + +T     +R  R +L    A+ I AT I   H  DD LET
Sbjct: 97  NFHILERDTYSIVKEVVPEGKTTCGLCSRLRRGSLYG-FAEEIGATKIALGHHRDDILET 155

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSF 180
           +++         G  L  M   +L D    +  RP   C+ EDI  F
Sbjct: 156 LFLNMFF-----GGKLKSMPPKLLSDDGKHVVIRPLAYCKEEDIEKF 197


>gi|331652394|ref|ZP_08353413.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331050672|gb|EGI22730.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 311

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKIKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|332706450|ref|ZP_08426511.1| tRNA Ile/lysidine synthetase [Lyngbya majuscula 3L]
 gi|332354334|gb|EGJ33813.1| tRNA Ile/lysidine synthetase [Lyngbya majuscula 3L]
          Length = 337

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 86/198 (43%), Gaps = 33/198 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-----VRYVSD 75
            +LVAVSGG DS+ L   L  +       K K+  + + HC      DE     V+ ++ 
Sbjct: 29  QVLVAVSGGQDSLCLSKLLLDLQP-----KWKWQ-LGIAHCDHRWTYDEGISLHVQQIAQ 82

Query: 76  VCS---RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                  LRIA  V   K S+      +AAR+ RY  + + A+T     ++T HT  D+ 
Sbjct: 83  SWGLPFHLRIAPEV---KKSE------SAARQWRYQALIDIAQTQGYATVVTGHTKSDRA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISW 188
           ETV     R     G G  G+   + ++  L     + RP L   R +   F  Q+ +S 
Sbjct: 134 ETVLYNLIR-----GSGTDGL-QALTWERPLAPGVRLVRPLLDTSRSETLQFCEQQQLSI 187

Query: 189 CEDPSNTDDRFERVRVRR 206
             D  N D  + R R+R+
Sbjct: 188 WVDAYNQDLNYARNRIRQ 205


>gi|254168818|ref|ZP_04875659.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
 gi|197622255|gb|EDY34829.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
          Length = 308

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 27/138 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCS 78
           IL+AVSGG DSM  L  +H +     FGK   ++  A++VD  + +  K   +  +    
Sbjct: 50  ILIAVSGGKDSMLTLYQMHKI-----FGKWRDLELVAVTVDEGIGDFRKSCAKVANTYAK 104

Query: 79  RLRIAHSVVSWKNS---------------KPQTGLMAAAREARYALISEHAKTINATLIM 123
           +L I H V+++K                 KP T      R+    +++ ++K I A  ++
Sbjct: 105 KLGIKHEVITFKEYLGITTDDVARVDKELKPCTYCGVFRRK----VLNMYSKEIGANYLI 160

Query: 124 TAHTFDDQLETVYMRSQR 141
                DD  +++ M   R
Sbjct: 161 LGLNLDDIAQSIIMNITR 178


>gi|167385245|ref|XP_001737264.1| ATP-binding domain-containing protein [Entamoeba dispar SAW760]
 gi|165899992|gb|EDR26462.1| ATP-binding domain-containing protein, putative [Entamoeba dispar
           SAW760]
          Length = 313

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 18/137 (13%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEV 70
            L+YP  HI++ VSGG DS  L   L + +  R     K++ ++VD  +   R+ + + V
Sbjct: 43  QLIYPTDHIVIGVSGGKDSTALATML-TRIEKRWPSGAKYTLVAVDEGIVGYRDKSLECV 101

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------ISEHAKTINAT 120
           R++ +    L++   ++S+  +   T      R  + A           + + A  + A 
Sbjct: 102 RWLQEY---LQLPLEIISYIETYGMTMDEIVTRGGKNACSYCGVLRRQCLEKAAIKVGAN 158

Query: 121 LIMTAHTFDDQLETVYM 137
           +I T H  DD  ETV M
Sbjct: 159 VIATGHNGDDVAETVLM 175


>gi|153939398|ref|YP_001392642.1| PP-loop family protein [Clostridium botulinum F str. Langeland]
 gi|152935294|gb|ABS40792.1| PP-loop family protein [Clostridium botulinum F str. Langeland]
 gi|295320627|gb|ADG01005.1| PP-loop family protein [Clostridium botulinum F str. 230613]
          Length = 249

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 17/194 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYVSDV 76
           I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L    +      +   +  V
Sbjct: 32  IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIIAIHVDLGLDMDLEPLKIFCKKNSIDLV 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +  IA+ V + +  K    L +  R+     +S   K+I AT I   H  DD +ET++
Sbjct: 91  IEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147

Query: 137 MRSQRDYAEKGMGLSGMCD-TILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           M   +      +G  G  +  I Y D  + I RP +  R + I+  + + N+   +    
Sbjct: 148 MNVLK------IGKFGSFNPHIDYKDKYVHIIRPLIYLREDLIKDLVKKHNLPVVKSTCP 201

Query: 195 TDDRFERVRVRRFV 208
            D +  R  ++  +
Sbjct: 202 EDKKTTREEMKNLM 215


>gi|94985996|ref|YP_605360.1| PP-loop domain-containing protein [Deinococcus geothermalis DSM
           11300]
 gi|205830577|sp|Q1IX43|TTCA_DEIGD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|94556277|gb|ABF46191.1| tRNA s(2)C-32 sulfurtransferase [Deinococcus geothermalis DSM
           11300]
          Length = 289

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 15/125 (12%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V +SGG DS  LL I LH  L  R+    +  A+++D       K     + +  +RL
Sbjct: 34  VMVCLSGGKDSYTLLDILLH--LQKRAPIHFEVVAVNLDQGQPGFPK---HVLPEYLTRL 88

Query: 81  RI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +         +S+V  K  + +T     +R  R  ++  HA+ I AT I   H  DD L
Sbjct: 89  GVPFDILTEDTYSIVKEKTPEGKTTCALCSR-LRRGILYRHAREIGATKIALGHHRDDIL 147

Query: 133 ETVYM 137
           ET++M
Sbjct: 148 ETLFM 152


>gi|145254700|ref|XP_001398711.1| PP-loop family protein [Aspergillus niger CBS 513.88]
 gi|134084294|emb|CAK43181.1| unnamed protein product [Aspergillus niger]
          Length = 645

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 19  PAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           P  + +A+SGG+DSM L           +  S  K   +A  VDH  RE +  E   V+ 
Sbjct: 45  PRRLGLAISGGADSMALAYLCKQWERTQTQTSDEKTSVTAFVVDHKAREESTREANMVAG 104

Query: 76  VCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               + +   +  ++W  S   +     AR  R+  + +  +  +   ++  H  DD +E
Sbjct: 105 WLDDMGLQTQILPLTWP-SHHISAFETHARRLRFQALGQACRAHSIETLLMGHHQDDNVE 163

Query: 134 TVYMRSQRDYAEKGMGLSGM 153
           T   R       +G GL+G+
Sbjct: 164 TTLWR--LCTGARGAGLAGI 181


>gi|145591717|ref|YP_001153719.1| PP-loop domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283485|gb|ABP51067.1| PP-loop domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 332

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 25/144 (17%)

Query: 16  LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDE 69
           L+ P  ++ VAVSGG DS+ LL  L S         +K  A +V+      C    ++ +
Sbjct: 49  LIVPGDYVAVAVSGGKDSLVLLHILGSFKERGLLRDVKMEAFTVNEGHPYSCFYRMSRRD 108

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------- 121
             YV ++ +R  I ++V  +K+    T    + R A+ A    H  TI+  L        
Sbjct: 109 --YVRELAARFGIEYNVYHFKDFFGVTAQELSERLAK-AGHEVHMCTIDGVLRRRLMNVV 165

Query: 122 --------IMTAHTFDDQLETVYM 137
                   I TAH  DD+ +TV M
Sbjct: 166 GRRRGWTKIATAHNLDDEAQTVLM 189


>gi|146311794|ref|YP_001176868.1| C32 tRNA thiolase [Enterobacter sp. 638]
 gi|205830587|sp|A4WAT7|TTCA_ENT38 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|145318670|gb|ABP60817.1| tRNA s(2)C-32 sulfurtransferase [Enterobacter sp. 638]
          Length = 311

 Score = 40.8 bits (94), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 15/170 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    +KFS ++V+   ++    E     Y+     
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVKFSLVAVNLDQKQPGFPEHILPEYLEQQGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           +++        KGM    M D    D    + RP   CR +DI  F   R
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAQAR 203


>gi|110597047|ref|ZP_01385336.1| tRNA(Ile)-lysidine synthetase-like [Chlorobium ferrooxidans DSM
           13031]
 gi|110341238|gb|EAT59703.1| tRNA(Ile)-lysidine synthetase-like [Chlorobium ferrooxidans DSM
           13031]
          Length = 337

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 35/199 (17%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLL---IALHSVLSDRSFGKIKFSAISV 58
           FLS I++ R   +       ILVA+SGG DSM +L    AL  VL  +         ++V
Sbjct: 8   FLSQIKARRLVEQG----DRILVALSGGPDSMAMLSLFTALRPVLHLQ---------LAV 54

Query: 59  DHCL-----RETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYAL 109
            HC      RE+  DE  +V +   RL +   V  +      S+ +  L   AR  RY  
Sbjct: 55  AHCNFLLRGRESDGDE-DFVREAALRLGMECFVERFDTRHHASQLKKSLEETARILRYGF 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRP 168
             +  +    + + TAH   D  ET+     R  +   + G+    D I+        RP
Sbjct: 114 FDKVLEEQGFSKVATAHHVSDNAETILFNLFRGASLPALKGIRARNDRII--------RP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
            L   + +I+ +L ++ I+
Sbjct: 166 MLLLHKAEIKGYLKEKGIA 184


>gi|311279743|ref|YP_003941974.1| PP-loop domain-containing protein [Enterobacter cloacae SCF1]
 gi|308748938|gb|ADO48690.1| PP-loop domain protein [Enterobacter cloacae SCF1]
          Length = 311

 Score = 40.8 bits (94), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPEYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|289578527|ref|YP_003477154.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
 gi|289528240|gb|ADD02592.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
          Length = 235

 Score = 40.8 bits (94), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 30/204 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77
           I V VSGG DS+ LL  LH +   ++F   KF  + +   L     D  + V + C    
Sbjct: 24  IAVGVSGGKDSVTLLYGLHLL---KNFYPKKFEVMGLMLTLGYDNFDP-KPVENFCREKE 79

Query: 78  -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                    I   V  ++  +    L A  R  R AL +  AK      +  AH +DD +
Sbjct: 80  IPFFIKETEIKKIVFDYRKEENPCSLCANLR--RGAL-NNFAKEKGCNKVALAHHYDDLI 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +T  M          +  +G   T      L    + + RP +  + +DIRS + + N+ 
Sbjct: 137 DTFVM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKNNLP 187

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211
             ++P   +   +R  +R  + D+
Sbjct: 188 VVKNPCPVEGHTKRHYIRNLIIDL 211


>gi|281418862|ref|ZP_06249881.1| PP-loop domain protein [Clostridium thermocellum JW20]
 gi|281407946|gb|EFB38205.1| PP-loop domain protein [Clostridium thermocellum JW20]
          Length = 237

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 24/199 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I V VSGG DS+ LL+AL  +   ++F  +KF   AI++   + E     VR   ++C R
Sbjct: 27  IAVGVSGGKDSLTLLVALRQL---KNFLPVKFELKAITLTMGIGEVDLSPVR---ELCER 80

Query: 80  LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + ++++V       + ++  K +      A   R AL    AK +    +  AH   D +
Sbjct: 81  IDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGAL-HNTAKRLGCNKVALAHHMHDVI 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +     Y  +    S +  T L    L++ RP +    + ++ F+   NI    +P
Sbjct: 140 ETFLL--SLFYEGRIHTFSPV--TYLDRKGLYLIRPLIYTEEKLVKQFVKANNIITVANP 195

Query: 193 SNTDDRFERVRVRRFVRDI 211
              +   +    R++++D+
Sbjct: 196 CPANGYTK----RQYIKDL 210


>gi|118575266|ref|YP_875009.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A]
 gi|118193787|gb|ABK76705.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A]
          Length = 269

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 20/128 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V VSGG DS+ LL  L  +     F   +  A+++D  +     + +  V + C  L 
Sbjct: 8   VAVGVSGGKDSLVLLHILEQMSQKWGF---ELEAVTIDEGIPGYRDEALSIVEEYCGSLG 64

Query: 82  IAHSVVSWKN--------------SKPQTGLMAAAREARYALISEHA-KTINATLIMTAH 126
           +AH V ++K+                 QT         R A+  +HA     A ++ TAH
Sbjct: 65  VAHRVYAYKDLFDMTLDEALNMRGENSQTSCSICGTLRRRAM--DHAIHDTGADVLATAH 122

Query: 127 TFDDQLET 134
             DD L+T
Sbjct: 123 NLDDTLQT 130


>gi|323702949|ref|ZP_08114606.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532080|gb|EGB21962.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 252

 Score = 40.8 bits (94), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 27/203 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           ++V VSGG DS  LL  L ++   R   KI F   A+ +D  L      ++  + + C R
Sbjct: 29  VVVGVSGGKDSSTLLFFL-NMYRHRYLKKIPFELHAVHLDMGLGA----DLAPLKEFCHR 83

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L I  ++          + + +T   A     R   +      +    +  AH  DD +E
Sbjct: 84  LNIPLTIKKTDIGTILFDIRKETNPCALCANLRRGALHNTTLELGFNKVALAHHLDDVME 143

Query: 134 TVYMR-----SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           T +M      + + +A K         T L   +L + RPF+    + +   +   NI  
Sbjct: 144 TFFMSLIFNGNMKTFAPK---------TYLDRTDLTVIRPFIYVTEDQVLELVDLENIPV 194

Query: 189 CEDPSNTDDRFERVRVRRFVRDI 211
             +P   + + +R  ++  V ++
Sbjct: 195 VHNPCPANKKTKREEIKHLVDNL 217


>gi|307354722|ref|YP_003895773.1| phosphoadenosine phosphosulfate reductase [Methanoplanus
           petrolearius DSM 11571]
 gi|307157955|gb|ADN37335.1| phosphoadenosine phosphosulfate reductase [Methanoplanus
           petrolearius DSM 11571]
          Length = 295

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 15/135 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS  LL  L     +R    I   AIS+D  +      +++ V  +  R  
Sbjct: 50  IAVAMSGGKDSSALLHFLAKTFGERR--DITIFAISIDEGI--CGYRDMKPVEKIAERYG 105

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLIMTAHTFDD 130
           ++   VS+K++   T     A++            R  L+++ A+ + AT I      DD
Sbjct: 106 VSFHSVSFKDAYGFTLDEIVAKQGDRISCSRCGVLRRHLLNKTARELGATKIALGFNLDD 165

Query: 131 QLETVYMRSQRDYAE 145
           + ++V M + R  AE
Sbjct: 166 EAQSVLMNALRGDAE 180


>gi|55378723|ref|YP_136573.1| hypothetical protein rrnAC2005 [Haloarcula marismortui ATCC 43049]
 gi|55231448|gb|AAV46867.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 331

 Score = 40.8 bits (94), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 16/133 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   ++ +SGG DS+ L   LH   ++    +I+  A+S+   +       +    ++  
Sbjct: 53  PETWVIGLSGGKDSVVLTQILHDTFAEDP--RIELVALSIHEGIEGYRDASLEACEELTD 110

Query: 79  RLRIAHSVVSWKNS-----------KPQTGLMAAAREA--RYALISEHAKTINATLIMTA 125
            L I H  VS+               P+ G+ A A     R  L+S++A+ ++A  ++T 
Sbjct: 111 DLGIEHVTVSYAEEFGVQMDDVVEDDPE-GMAACAYCGVFRRDLLSKYAEELDADKLLTG 169

Query: 126 HTFDDQLETVYMR 138
           H  DD+ ET  M 
Sbjct: 170 HNLDDEAETALMN 182


>gi|330014984|ref|ZP_08308019.1| PP-loop family protein [Klebsiella sp. MS 92-3]
 gi|328532464|gb|EGF59261.1| PP-loop family protein [Klebsiella sp. MS 92-3]
          Length = 310

 Score = 40.8 bits (94), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 57  IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 113

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 114 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 172

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 173 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 214


>gi|260598076|ref|YP_003210647.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Cronobacter
           turicensis z3032]
 gi|260217253|emb|CBA31174.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Cronobacter
           turicensis z3032]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E     Y++ +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPEYLAALGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|327484092|gb|AEA78499.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           LMA3894-4]
          Length = 365

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I F  ++V+   ++    E     Y+  +  
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H  DD LET
Sbjct: 100 EYKIIEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +++        KGM    + D   +     + RP   CR +DI
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|315638363|ref|ZP_07893542.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter upsaliensis JV21]
 gi|315481574|gb|EFU72199.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter upsaliensis JV21]
          Length = 322

 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 18/191 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSDVCSR 79
           L+A S GSDS  L   L           I F    +++  R+ +   ++E R ++     
Sbjct: 16  LLAFSYGSDSTALFYLLERE-------NIIFDMALINYKTRQNSDLEEEEARLLAK---- 64

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            R    + +    + +      AR+ RYA   +         ++ AH  +D  E   M  
Sbjct: 65  -RFHKQIFTQTAPRFKGNFEKNARDFRYAFFEKICIEEGYENLILAHQLNDLFEWFLM-- 121

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           Q       M L GM        N  + RP L   +  I +FL +  + +  D SN D +F
Sbjct: 122 QLSKGAGAMELLGM-SAFEKRENYTLIRPLLNVTKGQILAFLRENKLKYFNDESNKDLKF 180

Query: 200 ERVRVRRFVRD 210
           +R  +R    D
Sbjct: 181 KRNFIREHFSD 191


>gi|320333598|ref|YP_004170309.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           maricopensis DSM 21211]
 gi|319754887|gb|ADV66644.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           maricopensis DSM 21211]
          Length = 287

 Score = 40.4 bits (93), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%)

Query: 22  ILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSR 79
           ++V +SGG DS  LL I LH  L  R+    +  A+++D       K  + +Y++ +   
Sbjct: 32  VMVCLSGGKDSYTLLDILLH--LQKRAPIDFRLIAVNLDQGQPGFPKHVLPQYLTALGVE 89

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +I     +SVV  K  + +T     +R  R  ++  HAK I AT I   H  DD LET+
Sbjct: 90  HQILEQDTYSVVKDKTPEGKTTCSLCSR-LRRGILYTHAKRIGATKIALGHHRDDILETL 148

Query: 136 YM 137
           +M
Sbjct: 149 FM 150


>gi|217033783|ref|ZP_03439209.1| hypothetical protein HP9810_7g64 [Helicobacter pylori 98-10]
 gi|216943832|gb|EEC23272.1| hypothetical protein HP9810_7g64 [Helicobacter pylori 98-10]
          Length = 343

 Score = 40.4 bits (93), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 22/188 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DS  L    H ++ +     I F    VD+    T K  +  +     +L  
Sbjct: 24  LLGFSGGLDSTCLF---HLLVGEN----ITFDTALVDY---NTQKRRLEIIQH-AQKLAQ 72

Query: 83  AHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           AH    + +  P  +      AR+ RYA      K  +   ++ AH  +D+LE   M+  
Sbjct: 73  AHHKKCYIHYAPKIERNFEMRARKIRYAFFETLIKEHSYKHLILAHHLNDRLEWFLMQ-- 130

Query: 141 RDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                KG GL+ +     Y+   +  I RP L   ++ +++  L ++  + ED SN+  +
Sbjct: 131 ---LSKGAGLNTLLSFQAYEKRGFYAIIRPLLYTPKDTLKA--LAKDWEFFEDDSNSSLK 185

Query: 199 FERVRVRR 206
           F+R   R+
Sbjct: 186 FKRNFFRK 193


>gi|257386246|ref|YP_003176019.1| PP-loop domain protein [Halomicrobium mukohataei DSM 12286]
 gi|257168553|gb|ACV46312.1| PP-loop domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 332

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 18/133 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
           P   ++ +SGG DS+ L   L  V ++    +I+  A+S+ H   E  +DE    S  + 
Sbjct: 53  PETWVIGLSGGKDSVVLTQILQDVFAEDP--RIELVALSI-HEGIEGYRDESLDASVTLT 109

Query: 78  SRLRIAHSVVSWKNS-----------KPQTGLMAAAREA--RYALISEHAKTINATLIMT 124
             L I H VVS+               P+ G+ A A     R  L+S++A  ++A  ++T
Sbjct: 110 DDLGIRHEVVSYDEEFDVRMDEVVEDDPE-GMAACAYCGVFRRDLLSKYADELDADKLLT 168

Query: 125 AHTFDDQLETVYM 137
            H  DD+ ET  M
Sbjct: 169 GHNLDDEAETALM 181


>gi|148272021|ref|YP_001221582.1| putative cell cycle protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829951|emb|CAN00876.1| putative cell cycle protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 341

 Score = 40.4 bits (93), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSF 180
           ++ AHT DDQ ETV +   R        L GM   T     +    RP L  R    R+ 
Sbjct: 132 LLLAHTLDDQAETVLLGLAR--GSGATSLHGMAASTPARAADAVYLRPLLGIRAAVTRAA 189

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
              + +    DP N D  + RVRVR
Sbjct: 190 CADQGLDPWRDPHNADPAYARVRVR 214


>gi|15217127|gb|AAK92521.1|AF401042_1 LaaH [Lactobacillus sakei]
          Length = 348

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 119 ATLIMTAHTFDDQLETVYM---RSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRR 174
           A  ++TAH  DDQLET+ M   RS   +  +G+       D  L        RP L   +
Sbjct: 6   ADYLVTAHHGDDQLETLMMKFIRSGELHEMRGIQSQRPFADGTLI-------RPLLPFAK 58

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           +D+R + L  NI+  ED +N +    R RVR 
Sbjct: 59  QDLRDYALANNITSFEDQTNYETTVLRNRVRH 90


>gi|67470756|ref|XP_651341.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56468066|gb|EAL45955.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 313

 Score = 40.4 bits (93), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 18/137 (13%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEV 70
            L+YP  HI++ VSGG DS  L   L  +   R     K++ ++VD  +   R+ + + V
Sbjct: 43  QLIYPTDHIVIGVSGGKDSTALATMLARI-EKRWPSGAKYTLVAVDEGIVGYRDKSLECV 101

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------ISEHAKTINAT 120
           R++ +    L++   ++S+  +   T      R  + A           + + A  + A 
Sbjct: 102 RWLQNY---LQLPLEIISYIETYGMTMDEIVTRGGKNACSYCGVLRRQCLEKAAIKVGAN 158

Query: 121 LIMTAHTFDDQLETVYM 137
           +I T H  DD  ETV M
Sbjct: 159 VIATGHNGDDVAETVLM 175


>gi|262402130|ref|ZP_06078691.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC586]
 gi|262350912|gb|EEZ00045.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC586]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I F  ++V+   ++    E     Y+  +  
Sbjct: 43  IMVCLSGGKDSFTMLEILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H  DD LET
Sbjct: 100 EYKIIEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +++        KGM    + D   +     + RP   CR +DI
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|261339969|ref|ZP_05967827.1| PP-loop family protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317886|gb|EFC56824.1| PP-loop family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E     Y+ ++  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPAYLENLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|283832996|ref|ZP_06352737.1| PP-loop family protein [Citrobacter youngae ATCC 29220]
 gi|291071608|gb|EFE09717.1| PP-loop family protein [Citrobacter youngae ATCC 29220]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPEHILPEYLQQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|270262062|ref|ZP_06190334.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Serratia odorifera
           4Rx13]
 gi|270043938|gb|EFA17030.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Serratia odorifera
           4Rx13]
          Length = 312

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPAYLESLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYSIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERF 199


>gi|262038871|ref|ZP_06012218.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia
           goodfellowii F0264]
 gi|261747122|gb|EEY34614.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia
           goodfellowii F0264]
          Length = 273

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 30/203 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + VSGG DS+ L+   H +  DRS    +F A+S++   RE+   ++         L 
Sbjct: 53  IAIGVSGGKDSLLLVKLFHELKKDRSRN-FEFKAVSLNPGFRES---DLSNFKRNLENLN 108

Query: 82  IAHSVVS---WK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV- 135
           I  +++    W+  N K +        + R  ++ +  + +    +   H FDD +ET  
Sbjct: 109 IDCAIIDTNIWEIANEKAKDYPCFLCAKMRRGILYKKVEELGYNKLTLGHHFDDVIETTM 168

Query: 136 ----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
               Y  + +    K    SG         NL + RP +  R  DI  +  +  I     
Sbjct: 169 INMFYAGTLKTMTPKVKSTSG---------NLSLIRPLIYVREADIIEYTKENGIR---- 215

Query: 192 PSNTDDRFERVRV---RRFVRDI 211
           P N     E  R    RR V+D+
Sbjct: 216 PMNCGCTIEAGRTSSKRREVKDL 238


>gi|227505939|ref|ZP_03935988.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           striatum ATCC 6940]
 gi|227197461|gb|EEI77509.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           striatum ATCC 6940]
          Length = 321

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I V +SGG+DS+ L  AL +   D         A+ +DH L++ + ++    +     L
Sbjct: 33  EIAVGLSGGADSLALTAALVAEGFD-------VEALCIDHGLQDGSAEQAAKAAAQAETL 85

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
                V+    +K       +   A                +  AHT DDQ ET+ + + 
Sbjct: 86  GARARVLKVDVAK-----QGSMEAAARVARYRAFAAATDAPVAVAHTADDQAETLLLGAL 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R        ++GM  T   +  + + RP L  RR        +  +    DP N+D  F 
Sbjct: 141 RGK------VAGMLPTAEIE-GVQVVRPLLTVRRAQTLGACEELGLEPWYDPQNSDTNFR 193

Query: 201 RVRVR 205
           RV +R
Sbjct: 194 RVALR 198


>gi|160880393|ref|YP_001559361.1| PP-loop domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160429059|gb|ABX42622.1| PP-loop domain protein [Clostridium phytofermentans ISDg]
          Length = 242

 Score = 40.4 bits (93), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 20/200 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + +SGG DS+ LL AL  +   R F   KF+  ++   L     D  + ++ +C  L 
Sbjct: 26  IAIGISGGKDSLTLLYALAGL---RRFYPKKFTLEAITVSLGFDNFDTSK-IAALCKELD 81

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + ++VV+         ++ ++   +   + R    ++ AK +       AH  DD +ET 
Sbjct: 82  VNYTVVNTDIAPIIFETRKESNPCSLCAKMRKGAFNDKAKELGCNKSAYAHHKDDVIETT 141

Query: 136 YMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            M      R Y    +       T L  +++ + RP +     D+  F    N+S  ++P
Sbjct: 142 LMSLLFEGRYYTFSPI-------TYLDRMDITLIRPLIYVDEVDVIGFKNAYNLSVLKNP 194

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D   +R   +  V+ ++
Sbjct: 195 CPIDGYTKREYAKNLVKQLN 214


>gi|326202249|ref|ZP_08192118.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325987367|gb|EGD48194.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 239

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DSM LL AL   L +    K +  AIS+   +      +   V + C ++ 
Sbjct: 27  IAVGVSGGKDSMTLLTALRQ-LQNFYPKKFELEAISLTMGI---GNADYTPVVEYCKQIG 82

Query: 82  IAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + +SV            +N K    + A  R  R AL ++ AK +    +   H  DD +
Sbjct: 83  VNYSVEETLIGKIIFEVRNEKNPCSMCANLR--RGALHNK-AKKLGCNKVALGHHRDDAV 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ + S   Y  +    S +  T L   +L++ RP +    + I++ +   ++   + P
Sbjct: 140 ETLLLSSF--YEGRIHTFSPV--TYLDRQDLYLIRPLIYTEEKQIKAVVKSESLPIVKSP 195

Query: 193 SNTDDRFERVRVRRFVRDI 211
            + D + +R  ++  + ++
Sbjct: 196 CHVDGKTKRQYIKDLILEL 214


>gi|229521531|ref|ZP_04410950.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM
           11079-80]
 gi|229341629|gb|EEO06632.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM
           11079-80]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I F  ++V+   ++    E     Y+  +  
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H  DD LET
Sbjct: 100 EYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +++        KGM    + D   +     + RP   CR +DI
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|206578688|ref|YP_002238857.1| PP-loop family protein [Klebsiella pneumoniae 342]
 gi|288935785|ref|YP_003439844.1| PP-loop domain protein [Klebsiella variicola At-22]
 gi|290509811|ref|ZP_06549182.1| C32 tRNA thiolase [Klebsiella sp. 1_1_55]
 gi|254790132|sp|B5XRN3|TTCA_KLEP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|206567746|gb|ACI09522.1| PP-loop family protein [Klebsiella pneumoniae 342]
 gi|288890494|gb|ADC58812.1| PP-loop domain protein [Klebsiella variicola At-22]
 gi|289779205|gb|EFD87202.1| C32 tRNA thiolase [Klebsiella sp. 1_1_55]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|167749764|ref|ZP_02421891.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702]
 gi|167657247|gb|EDS01377.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702]
          Length = 241

 Score = 40.4 bits (93), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 16/214 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79
           I V VSGG DS+ LL  L  +   R F +  +  +A+++D        +    V+ +C +
Sbjct: 24  IAVGVSGGKDSLVLLAGLAQM---RRFAEFDYDITAVTIDPGF-NGVPNNYDAVARLCEK 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L +  S+V  +      + + +    +     R   + + AK      +   H  DD +E
Sbjct: 80  LDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAAGCNKLALGHNNDDVIE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  M     + E  +G      T L   ++ + RP +      + S   + N+   +   
Sbjct: 140 TFIMNL---FNEGRIGCFSP-KTHLDRKDITVIRPLVLAPESQVLSACNRNNLEIVKSVC 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             D    R + + F+RD++      K++ F  LR
Sbjct: 196 PADKTTSRQKTKEFLRDMEHKDKGFKLRMFTALR 229


>gi|153217159|ref|ZP_01950923.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153803581|ref|ZP_01958167.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153827170|ref|ZP_01979837.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153830588|ref|ZP_01983255.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229515797|ref|ZP_04405256.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21]
 gi|229523484|ref|ZP_04412889.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv.
           albensis VL426]
 gi|254286121|ref|ZP_04961081.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262190246|ref|ZP_06048519.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT
           5369-93]
 gi|297579020|ref|ZP_06940948.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|124113825|gb|EAY32645.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124120879|gb|EAY39622.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|148873915|gb|EDL72050.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149738932|gb|EDM53254.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150423790|gb|EDN15731.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|229337065|gb|EEO02082.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv.
           albensis VL426]
 gi|229347566|gb|EEO12526.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21]
 gi|262033864|gb|EEY52331.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT
           5369-93]
 gi|297536614|gb|EFH75447.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I F  ++V+   ++    E     Y+  +  
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H  DD LET
Sbjct: 100 EYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +++        KGM    + D   +     + RP   CR +DI
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|262042928|ref|ZP_06016073.1| PP-loop family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039768|gb|EEW40894.1| PP-loop family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 326

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 57  IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 113

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 114 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 172

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 173 LFLNIFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 214


>gi|320186802|gb|EFW61523.1| C32 tRNA thiolase [Shigella flexneri CDC 796-83]
 gi|332094958|gb|EGI99998.1| PP-loop family protein [Shigella boydii 3594-74]
          Length = 311

 Score = 40.4 bits (93), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|229529498|ref|ZP_04418888.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           12129(1)]
 gi|229333272|gb|EEN98758.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           12129(1)]
          Length = 310

 Score = 40.4 bits (93), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I F  ++V+   ++    E     Y+  +  
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H  DD LET
Sbjct: 100 EYKIIEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +++        KGM    + D   +     + RP   CR +DI
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|256833319|ref|YP_003162046.1| tRNA(Ile)-lysidine synthetase [Jonesia denitrificans DSM 20603]
 gi|256686850|gb|ACV09743.1| tRNA(Ile)-lysidine synthetase [Jonesia denitrificans DSM 20603]
          Length = 339

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 50/262 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEV---RYVSDV- 76
           + VA SGG+DS+ +   L  V   R +   + SA  VDH L  ++A+  V   R + D+ 
Sbjct: 28  VAVACSGGADSLAVAATLAHVGPRRGW---QISAFIVDHDLHPDSAQVSVVAARQLIDLG 84

Query: 77  -----CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                 +R+ +AH      +  P+     A   A   L ++H   +    I+  HT DDQ
Sbjct: 85  FPHVTITRVTVAHGP---GHGGPEAAARTARYAALDRLRTQHGVDV----ILLGHTRDDQ 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+V +   R    +   LSG+     + +     RPFL   R           ++   D
Sbjct: 138 AESVLLGLARGSGAR--SLSGIRPRTGHYV-----RPFLSLTRAATEEICSLHEVNVWHD 190

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           P+NTD                       +     LR +V   V  L+   L   +   +A
Sbjct: 191 PTNTD-----------------------ITPQGPLRSQVRGVVIPLMENVLGPGVADALA 227

Query: 252 ISQDILNIDSTLLFYLLRVSAA 273
            + D+L+ D+  L    R + A
Sbjct: 228 RTADLLHADAEALEQWARTAQA 249


>gi|187732105|ref|YP_001880184.1| C32 tRNA thiolase [Shigella boydii CDC 3083-94]
 gi|205830633|sp|B2U0Z1|TTCA_SHIB3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|187429097|gb|ACD08371.1| PP-loop family protein [Shigella boydii CDC 3083-94]
          Length = 311

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|147674407|ref|YP_001216989.1| hypothetical protein VC0395_A1043 [Vibrio cholerae O395]
 gi|262169273|ref|ZP_06036965.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC27]
 gi|205830637|sp|A5F888|TTCA_VIBC3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|146316290|gb|ABQ20829.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227013348|gb|ACP09558.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262022086|gb|EEY40795.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC27]
          Length = 310

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 15/163 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I F  ++V+   ++    E     Y+  +  
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLDSLGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H  DD LET
Sbjct: 100 EYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +++        KGM    + D   +     + RP   CR +DI
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|238894461|ref|YP_002919195.1| C32 tRNA thiolase [Klebsiella pneumoniae NTUH-K2044]
 gi|238546777|dbj|BAH63128.1| hypothetical protein KP1_2451 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 311

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|221214714|ref|ZP_03587683.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Burkholderia
           multivorans CGD1]
 gi|221165253|gb|EED97730.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Burkholderia
           multivorans CGD1]
          Length = 154

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 11/150 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A     + R+ G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGVPDGARIAIAYSGGLDSSVLLDA-----AVRAAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMT 124
           A     +  +  +RL +A   +     +    G+ A+ARE RYA +    +   A  +  
Sbjct: 69  ADAWAAHAREQAARLGVAFDAMHVDVPRDSGVGIEASARERRYAALDAMCERHGAAALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154
           A   DDQ ETV ++  R     G G++G+ 
Sbjct: 129 AQHADDQAETVLLQLLR-----GAGIAGLA 153


>gi|152969928|ref|YP_001335037.1| C32 tRNA thiolase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|205830598|sp|A6T886|TTCA_KLEP7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|150954777|gb|ABR76807.1| hypothetical protein KPN_01375 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 311

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QKSAPISFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|320174310|gb|EFW49465.1| C32 tRNA thiolase [Shigella dysenteriae CDC 74-1112]
          Length = 311

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L   L+ +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEIL---LNLQQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|291556343|emb|CBL33460.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium siraeum V10Sc8a]
          Length = 241

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 16/214 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79
           I V VSGG DS+ LL  L  +   R F +  +  +A+++D        +    V+ +C +
Sbjct: 24  IAVGVSGGKDSLVLLAGLAQM---RRFAEFDYDITAVTIDPGF-NGVPNNYDAVARLCEK 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L +  S+V  +      + + +    +     R   + + AK      +   H  DD +E
Sbjct: 80  LDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAAGCNKLALGHNNDDVIE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  M     + E  +G      T L   ++ + RP +      + S   + N+   +   
Sbjct: 140 TFIMNL---FNEGRIGCFSP-KTHLDRKDITVIRPLVLAPESQVLSACNRNNLEIVKSVC 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             D    R + + F+RD++      K++ F  LR
Sbjct: 196 PADKTTTRQKTKEFLRDMEHKDKGFKLRMFTALR 229


>gi|260893554|ref|YP_003239651.1| PP-loop domain protein [Ammonifex degensii KC4]
 gi|260865695|gb|ACX52801.1| PP-loop domain protein [Ammonifex degensii KC4]
          Length = 244

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 9/121 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DS+ LL  L + L D S       AI +D   +E    ++  ++D CS+  
Sbjct: 20  IAVGVSGGKDSVALLRIL-AHLRDYSHLSFSMVAIMIDPGWKEV---DIGPLADFCSKFD 75

Query: 82  IA-----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           I      H +     +K +    +   + R  L+   A ++    +   H  DD +ET +
Sbjct: 76  IPFYLVKHPIARIIAAKGENNPCSLCAKLRSGLLYSKAVSLGCRRVALGHHLDDVIETFF 135

Query: 137 M 137
           +
Sbjct: 136 L 136


>gi|223983243|ref|ZP_03633437.1| hypothetical protein HOLDEFILI_00717 [Holdemania filiformis DSM
           12042]
 gi|223964848|gb|EEF69166.1| hypothetical protein HOLDEFILI_00717 [Holdemania filiformis DSM
           12042]
          Length = 407

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V VSGG DSM LL      L  R   ++      V++  R TA  + + V   C    I
Sbjct: 12  IVGVSGGPDSMALLD-----LCRRH--RVSVVCAHVNYHHRPTADRDQQIVEAYCRNYAI 64

Query: 83  AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
                S    K  +G   A AREARYA  +  A    A  ++ A   DD LET  ++ +
Sbjct: 65  --PFYSLDPVKETSGNFQAWAREARYAFFARLAVQEAAAGVLIAQHLDDFLETALLQQE 121


>gi|117413399|ref|YP_851006.1| polyprotein [Blackberry virus Y]
 gi|123882345|sp|A0AUJ5|POLG_BVY3 RecName: Full=Genome polyprotein; Contains: RecName: Full=P1
            proteinase; AltName: Full=N-terminal protein; Contains:
            RecName: Full=Helper component proteinase; Short=HC-pro;
            Contains: RecName: Full=Protein P3; Contains: RecName:
            Full=6 kDa protein 1; Short=6K1; Contains: RecName:
            Full=Cytoplasmic inclusion protein; Short=CI; Contains:
            RecName: Full=6 kDa protein 2; Short=6K2; Contains:
            RecName: Full=Viral genome-linked protein; AltName:
            Full=VPg; Contains: RecName: Full=Nuclear inclusion
            protein A; Short=NI-a; Short=NIa; AltName: Full=49 kDa
            proteinase; Short=49 kDa-Pro; AltName: Full=NIa-pro;
            Contains: RecName: Full=Nuclear inclusion protein B;
            Short=NI-b; Short=NIb; AltName: Full=RNA-directed RNA
            polymerase; Contains: RecName: Full=Capsid protein;
            Short=CP; AltName: Full=Coat protein
 gi|116874513|gb|AAX87001.1| polyprotein [Blackberry virus Y]
          Length = 3491

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 327  TLILYPEETTVWDGRYQFQ---NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSK 383
            TL    + TTV+DGRY F+   + S  +  I  QS    D P  IPP  ++ AL  + ++
Sbjct: 3091 TLYTCDDNTTVYDGRYDFEVPTDASGGVFIIDFQSSSGTDTPPVIPPATSEPALQPVLTR 3150

Query: 384  EGGKPLLAP 392
            +  +P   P
Sbjct: 3151 QTSRPPTPP 3159


>gi|187776786|ref|ZP_02993259.1| hypothetical protein CLOSPO_00302 [Clostridium sporogenes ATCC
           15579]
 gi|187775445|gb|EDU39247.1| hypothetical protein CLOSPO_00302 [Clostridium sporogenes ATCC
           15579]
          Length = 249

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 9/121 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRY--VSDV 76
           I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L    E  K   +   +  +
Sbjct: 32  IAVAVSGGKDSIFLLFCL-KLIQLTAIKDIEIVAIHVDLGLDMGLEPLKIFCKKNGIDLI 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +  IA+ V + +  K    L +  R+     +S   K+I AT I   H  DD +ET++
Sbjct: 91  IEKTNIANVVFNERKDKNPCSLCSKLRKGCLVRVS---KSIGATKIALGHNCDDVIETLF 147

Query: 137 M 137
           M
Sbjct: 148 M 148


>gi|262183446|ref|ZP_06042867.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975]
          Length = 324

 Score = 40.0 bits (92), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +  AHT DDQ ET+ +   R        ++GM +    +  + + RP L  RR    +  
Sbjct: 126 VAVAHTADDQAETLLLSVLRGK------VAGMRERSAVE-GVHVLRPLLSVRRAQTETAC 178

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  +   +DP N D  F RV +RR +
Sbjct: 179 AELGLEVWQDPQNQDASFRRVALRREI 205


>gi|290475465|ref|YP_003468353.1| hypothetical protein XBJ1_2463 [Xenorhabdus bovienii SS-2004]
 gi|289174786|emb|CBJ81587.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score = 40.0 bits (92), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  LL  L ++   +    + FS ++V+   ++    E     Y+ ++  
Sbjct: 37  IMVCLSGGKDSYTLLSILQNL---QKSAPVNFSLVAVNLDQKQPGFPEHILPAYLEELGI 93

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 94  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 152

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQR 184
           V++         G  L GM   ++ D    I  RP   CR +DI  +   R
Sbjct: 153 VFLN-----MFYGGKLKGMPPKLISDDGKHIVIRPLAYCREKDIERYAEAR 198


>gi|269123992|ref|YP_003306569.1| PP-loop domain-containing protein [Streptobacillus moniliformis DSM
           12112]
 gi|268315318|gb|ACZ01692.1| PP-loop domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 283

 Score = 40.0 bits (92), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 23/175 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +AVSGG DS+ L+     +  D+ F   +F A+S++   RE   +++++       L 
Sbjct: 53  IAIAVSGGKDSLLLVKLFQELKKDKRFN-FEFKALSLNPGFRE---EDLKHFKFNLKELN 108

Query: 82  IAHSVVS---WK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           I   ++    WK  N            + R  ++ ++ + +    +   H FDD +ET  
Sbjct: 109 IDCDIIDTNIWKVANEMANEYPCFLCAKMRRGILYKNIEKMGYNKLALGHHFDDVIETTL 168

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDL-----NLWISRPFLRCRREDIRSFLLQRNI 186
           +          +   G   T+L  +     NL + RP +    EDI  F  +  I
Sbjct: 169 IN---------LFYGGTLKTMLPKMPSTSGNLTLIRPMVNVHEEDIIKFTKKNGI 214


>gi|239629122|ref|ZP_04672153.1| hypoxanthine phosphoribosyltransferase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519268|gb|EEQ59134.1| hypoxanthine phosphoribosyltransferase [Clostridiales bacterium
           1_7_47FAA]
          Length = 514

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  DDQ ET+     R     G GL G+   I Y +   I RP L   R DI  +L
Sbjct: 188 IAVAHHSDDQAETILHNLFR-----GSGLGGL-KGISY-VRGRIIRPLLDIGRRDIVEWL 240

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
            +   +W +D +N+   + R R+R
Sbjct: 241 EENGCAWVQDSTNSSGHYTRNRIR 264


>gi|157736789|ref|YP_001489472.1| hypothetical protein Abu_0536 [Arcobacter butzleri RM4018]
 gi|315635969|ref|ZP_07891230.1| PP-loop family protein [Arcobacter butzleri JV22]
 gi|157698643|gb|ABV66803.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
 gi|315479753|gb|EFU70425.1| PP-loop family protein [Arcobacter butzleri JV22]
          Length = 261

 Score = 40.0 bits (92), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 76/186 (40%), Gaps = 17/186 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV  SGG DS+ L+ +L+ +     +   +F A++V + + E    +V ++S+ C    
Sbjct: 28  VLVGFSGGKDSLTLIHSLNRLKKVVPY-NFEFKAVTVTYGMGE----QVEFLSNHCKEHG 82

Query: 82  IAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H ++       + +  +  +   +     R   +   A       +   H  DD +E+
Sbjct: 83  IEHEIINTEIFELAGEKIRKNSSFCSFFSRMRRGYLYSTALEQGYNKVALGHHLDDAMES 142

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            +M    ++   G  +  M      +  L + RP + CR   +R+F     I    D + 
Sbjct: 143 FFM----NFFYNGT-MRTMPPIYKAENGLEVIRPLIFCRERQLRAFANTNEIRVIGDEAC 197

Query: 195 TDDRFE 200
              RF+
Sbjct: 198 PGLRFD 203


>gi|152993337|ref|YP_001359058.1| hypothetical protein SUN_1754 [Sulfurovum sp. NBC37-1]
 gi|151425198|dbj|BAF72701.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 265

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 24/183 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG DS+ L+  L  +     F + +F A +V + + +   D   ++S  C    
Sbjct: 38  VLVGLSGGKDSLALVHGLKHIQRHAPF-RFEFEACTVKYGMPDEHYD---FLSKHCEEYG 93

Query: 82  IAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H+V       +S    +  +   +     R   +   A+      +   H FDD +E+
Sbjct: 94  IKHTVYDTNIFEISHNTIRENSSFCSYFSRMRRGALYTFAEQGGFNKVALGHHFDDTVES 153

Query: 135 VYMRSQRDYAEKGMGLSGMCDTI--LYDL--NLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +M          M  +G    +  +Y       + RP ++ R   +R+F    N+    
Sbjct: 154 FFM---------NMFYNGTMRALAPIYKTGRGFHLIRPLIQARESQLRAFADDNNLQVIG 204

Query: 191 DPS 193
           D +
Sbjct: 205 DEA 207


>gi|90420934|ref|ZP_01228839.1| ATPase of the PP-loop superfamily [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334909|gb|EAS48681.1| ATPase of the PP-loop superfamily [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 305

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 22/204 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A  LV +SGG DS  LL AL S L  R    +   A ++D       K     + D  SR
Sbjct: 73  ARWLVGLSGGKDSYALL-ALLSDLKYRGLLPVDILACNLDQGQPNFPK---HVLPDFLSR 128

Query: 80  LRIAH--------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             I H        SVV+ K     T     +R  R  L    A+      ++  H  DD 
Sbjct: 129 YDIPHRIEYRDTYSVVTEKVPSNATYCALCSRLRRGNLY-RIAREEGCEALVLGHHADDC 187

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSF--LLQRNISW 188
           LET +M         G  LS M   ++ D  +L + RP +R   EDI  F   ++  I  
Sbjct: 188 LETFFMN-----LFHGGRLSAMPAKLINDEGDLMVLRPLIRSVEEDIAKFSAAMKFPIIP 242

Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212
           C D   + D  +R   ++ + D++
Sbjct: 243 C-DLCGSQDGLQRNVTKQMIADLE 265


>gi|157370847|ref|YP_001478836.1| C32 tRNA thiolase [Serratia proteamaculans 568]
 gi|205830624|sp|A8GF18|TTCA_SERP5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|157322611|gb|ABV41708.1| PP-loop domain protein [Serratia proteamaculans 568]
          Length = 310

 Score = 40.0 bits (92), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHILPAYLESLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYQIVEENTYSIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERF 199


>gi|322371601|ref|ZP_08046147.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253]
 gi|320548892|gb|EFW90560.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253]
          Length = 322

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 14/127 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+ +SGG DS+ L   LH   ++    +I+  A+++   +       +    ++   L I
Sbjct: 57  LIGLSGGKDSVVLTKILHDTFAEDP--RIELVALTIHEGIEGYRDKSLDACLELTDDLDI 114

Query: 83  AHSVVSWKNS----------KPQTGLMAAAREA--RYALISEHAKTINATLIMTAHTFDD 130
            H VVS++            K    + A A     R  L+S++A+   A  ++T H  DD
Sbjct: 115 RHEVVSYEEEFDLRMDDVVGKDPENMAACAYCGVFRRDLLSKYAEEYGANKLLTGHNLDD 174

Query: 131 QLETVYM 137
           + ET  M
Sbjct: 175 EAETALM 181


>gi|237756505|ref|ZP_04585036.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691334|gb|EEP60411.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 452

 Score = 40.0 bits (92), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 14/188 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA SGG DS+ L   L      ++   ++     ++H LR+ +  +  +     S L 
Sbjct: 22  ILVAFSGGPDSLVLTNLLLKF--QKTLNILEIQLAHLNHALRKESDQDQEFCEKFASSLG 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA----RYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V      K    L  +  EA    RY   ++  +  N + I T H   D  E++ +
Sbjct: 80  LKIHVKKVDVKKVAKELKISVEEAGRLERYKFFNKILQKENLSKIATGHHLSDLTESIVL 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              +       G S   + I+        RP     +E+I  +  +  + +  D SN   
Sbjct: 140 WFIQGNKRGLKGFSPKENNII--------RPLYLITKEEIEEYCQKNGLVYLVDQSNFSR 191

Query: 198 RFERVRVR 205
           ++ R +VR
Sbjct: 192 KYLRNQVR 199


>gi|227834068|ref|YP_002835775.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975]
 gi|227455084|gb|ACP33837.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975]
          Length = 317

 Score = 40.0 bits (92), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +  AHT DDQ ET+ +   R        ++GM +    +  + + RP L  RR    +  
Sbjct: 119 VAVAHTADDQAETLLLSVLRGK------VAGMRERSAVE-GVHVLRPLLSVRRAQTETAC 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV 208
            +  +   +DP N D  F RV +RR +
Sbjct: 172 AELGLEVWQDPQNQDASFRRVALRREI 198


>gi|82544200|ref|YP_408147.1| C32 tRNA thiolase [Shigella boydii Sb227]
 gi|123559537|sp|Q320D9|TTCA_SHIBS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|81245611|gb|ABB66319.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 311

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  +  T I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGTTKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|37679865|ref|NP_934474.1| ATPase [Vibrio vulnificus YJ016]
 gi|320156359|ref|YP_004188738.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus
           MO6-24/O]
 gi|81757527|sp|Q7MKU7|TTCA_VIBVY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|37198610|dbj|BAC94445.1| predicted ATPase [Vibrio vulnificus YJ016]
 gi|319931671|gb|ADV86535.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus
           MO6-24/O]
          Length = 310

 Score = 40.0 bits (92), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 29/170 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L S+   +    I FS ++V+          H L E       
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPISFSLVAVNLDQKQPGFPAHVLPE------- 92

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H 
Sbjct: 93  YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHH 151

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            DD LET+++        KGM    + D   +     + RP   CR +DI
Sbjct: 152 RDDILETLFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|332796837|ref|YP_004458337.1| PP-loop domain-containing protein [Acidianus hospitalis W1]
 gi|332694572|gb|AEE94039.1| PP-loop domain protein [Acidianus hospitalis W1]
          Length = 319

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 19/137 (13%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L+    IL+AVSGG DS+ L   L S +  +             +  +E A+   +Y+
Sbjct: 42  QGLLKANKILLAVSGGKDSLTLADTLASFIDPKRLVAFNIVEGISGYNRKEQAEKLRKYL 101

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT--GLMAAAREA-------------RYALISEHAKTIN 118
            D    L I     S+K+S   T   ++++AR               R  LI++  + + 
Sbjct: 102 DD----LGIELISTSFKDSVGYTLDEMVSSARAKGLNISACTFCGGFRRKLINDAGRQVK 157

Query: 119 ATLIMTAHTFDDQLETV 135
           A L+ T H  DD+ +TV
Sbjct: 158 ADLVATGHNLDDEAQTV 174


>gi|88859652|ref|ZP_01134292.1| hypothetical protein PTD2_21752 [Pseudoalteromonas tunicata D2]
 gi|88818669|gb|EAR28484.1| hypothetical protein PTD2_21752 [Pseudoalteromonas tunicata D2]
          Length = 304

 Score = 40.0 bits (92), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V +SGG DS  +   L S+   +    IKF  I+V+   ++    E   +      L 
Sbjct: 40  IMVCMSGGKDSYTMFDILQSL---QRAAPIKFELIAVNLDQKQPGFPE-HVLPQYFESLG 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +V     K  T ++   +         R  ++   AK + AT I   H  DD +ET
Sbjct: 96  VEYKIVEEDTYKIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDMIET 155

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM      D    D    + RP   C+  DI  +
Sbjct: 156 LFLNMFYGGKLKGMPAKLASD----DGQHMVIRPLAYCKEADIEEY 197


>gi|271500278|ref|YP_003333303.1| PP-loop domain-containing protein [Dickeya dadantii Ech586]
 gi|270343833|gb|ACZ76598.1| PP-loop domain protein [Dickeya dadantii Ech586]
          Length = 313

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 20/201 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E    +Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    + D    D    + RP   CR +DI  F   R       P N
Sbjct: 158 LFLNMFYGGKLKGMPPKLVSD----DGKHVVIRPLAYCREKDIERFAEARQFPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDID 212
              +    +R  ++  +RD D
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD 232


>gi|261367670|ref|ZP_05980553.1| PP-loop family protein [Subdoligranulum variabile DSM 15176]
 gi|282570463|gb|EFB75998.1| PP-loop family protein [Subdoligranulum variabile DSM 15176]
          Length = 252

 Score = 39.7 bits (91), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 24/218 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKD-----EVRYVS 74
           ++V VSGG DS+ L IAL  +   R++  + F   A+++D C      D     E+    
Sbjct: 27  VMVGVSGGKDSVVLTIALGRL---RAYLGVPFEVQAVTLDPCFGGVETDYSPLSELFAAE 83

Query: 75  DVCSRLR---IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           ++   +R   I   V  ++       L A   + R   +   A+ +    +   H  DD 
Sbjct: 84  NIPYEVRRTDIGPVVFDYRKESNPCALCA---KLRRGTLHTAAQQLGCNKVALGHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           +ET YM   R+      G  G    + Y    +L + RP L     ++ S + +  +   
Sbjct: 141 VETFYMNLWRE------GRIGCFSPVTYLSRRDLTMIRPLLLATESEVTSAVKRAGLPVI 194

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +     D    R   ++FVR+        + K    L+
Sbjct: 195 KSRCPADGVTTREETKQFVREFSRKDPAFRQKTLHALQ 232


>gi|24113173|ref|NP_707683.1| C32 tRNA thiolase [Shigella flexneri 2a str. 301]
 gi|30062867|ref|NP_837038.1| C32 tRNA thiolase [Shigella flexneri 2a str. 2457T]
 gi|110805759|ref|YP_689279.1| C32 tRNA thiolase [Shigella flexneri 5 str. 8401]
 gi|81723327|sp|Q83KS7|TTCA_SHIFL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123048160|sp|Q0T3Z1|TTCA_SHIF8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|24052163|gb|AAN43390.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30041115|gb|AAP16845.1| hypothetical protein S1448 [Shigella flexneri 2a str. 2457T]
 gi|110615307|gb|ABF03974.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281601229|gb|ADA74213.1| ATPase [Shigella flexneri 2002017]
 gi|313650582|gb|EFS14985.1| PP-loop family protein [Shigella flexneri 2a str. 2457T]
 gi|332757685|gb|EGJ88016.1| PP-loop family protein [Shigella flexneri 4343-70]
 gi|332760198|gb|EGJ90494.1| PP-loop family protein [Shigella flexneri K-671]
 gi|332767615|gb|EGJ97808.1| C32 tRNA thiolase [Shigella flexneri 2930-71]
 gi|333004457|gb|EGK23987.1| PP-loop family protein [Shigella flexneri VA-6]
 gi|333004753|gb|EGK24275.1| PP-loop family protein [Shigella flexneri K-218]
 gi|333007299|gb|EGK26781.1| PP-loop family protein [Shigella flexneri K-272]
 gi|333018636|gb|EGK37930.1| PP-loop family protein [Shigella flexneri K-304]
 gi|333019295|gb|EGK38579.1| PP-loop family protein [Shigella flexneri K-227]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  +  T I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGTTKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI+ F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRF 199


>gi|297544802|ref|YP_003677104.1| PP-loop domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842577|gb|ADH61093.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 235

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 30/204 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77
           I V VSGG DS+ LL  LH +   ++F   KF  + +   L     D  + V + C    
Sbjct: 24  IAVGVSGGKDSVTLLYGLHLL---KNFYPKKFEVMGLMLTLGYDNFDP-KPVENFCREKE 79

Query: 78  -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                    I   V  ++  +    L A  R  R AL +  AK      +  AH +DD +
Sbjct: 80  IPFFIKETEIKKIVFDYRKEENPCSLCANLR--RGAL-NNFAKEKGCNKVALAHHYDDLI 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +T  M          +  +G   T      L    + + RP +  + +DIRS + + N+ 
Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKNNLP 187

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211
             ++P   +    R  +R  + D+
Sbjct: 188 VVKNPCPVEGHTTRHYIRNLIIDL 211


>gi|315605195|ref|ZP_07880242.1| hypoxanthine phosphoribosyltransferase [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313116|gb|EFU61186.1| hypoxanthine phosphoribosyltransferase [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 254

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           SEHA       ++  HT +DQ ETV +R  R        L  +      +  +   RP L
Sbjct: 18  SEHAP------VLLGHTMEDQAETVLLRLARGSGPSS--LRAIAPLARDEAGVTWLRPLL 69

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDD 197
             RR D      Q  ++  EDP+N  D
Sbjct: 70  GLRRADTAGACAQAGLTPVEDPTNAVD 96


>gi|213580971|ref|ZP_03362797.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 224

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199


>gi|304396028|ref|ZP_07377910.1| PP-loop domain protein [Pantoea sp. aB]
 gi|304356397|gb|EFM20762.1| PP-loop domain protein [Pantoea sp. aB]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    + FS I+V+   ++    E    +Y+     
Sbjct: 42  IMVCLSGGKDSYTMLEILRSL---QKSAPVNFSLIAVNLDQKQPGFPEHILPQYLEAQGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             RI     +S+V  K  + +T     +R  R  ++   A  +  T I   H  DD L+T
Sbjct: 99  EYRIIEEDTYSIVKEKVPEGKTTCSLCSR-LRRGILYRVATELGCTKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYCREKDIIRF 199


>gi|261211593|ref|ZP_05925880.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC341]
 gi|260838943|gb|EEX65575.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC341]
          Length = 310

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 29/170 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L S+   +    I F  I+V+          H L E       
Sbjct: 43  IMVCLSGGKDSFTMLEILMSL---QKSAPISFELIAVNLDQKQPGFPAHVLPE------- 92

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H 
Sbjct: 93  YLESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHH 151

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            DD LET+++        KGM    + D   +     + RP   CR +DI
Sbjct: 152 RDDILETLFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|238926101|ref|ZP_04657861.1| PP-loop family ATPase [Selenomonas flueggei ATCC 43531]
 gi|238885991|gb|EEQ49629.1| PP-loop family ATPase [Selenomonas flueggei ATCC 43531]
          Length = 260

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 30/171 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HIL+ VSGG DS+ L  AL ++L +R       +A +V+    +    +V  ++  C  L
Sbjct: 28  HILIGVSGGKDSIFLTYAL-AILRERLKKDFTIAAFTVNPQFDDPFDTDV--IAAFCKSL 84

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA---------RYALISEHAKTINATLIMTAHTFDDQ 131
            + + VV    +    G +A   E          R  +++ +AK  +   +  AH  DD 
Sbjct: 85  DVPYEVVDVDIA----GAIAEQEEKSPCFTCAFFRRGVVNRYAKEHHMNKVAYAHHHDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCRREDI 177
           +ET  M          +  SG  +T      L    + + RP +  R ++I
Sbjct: 141 VETFLM---------SLFYSGQLNTFRPKTYLDKTGITVIRPLVYFREQEI 182


>gi|124027476|ref|YP_001012796.1| ATPase [Hyperthermus butylicus DSM 5456]
 gi|123978170|gb|ABM80451.1| predicted ATPase of the PP-loop superfamily [Hyperthermus butylicus
           DSM 5456]
          Length = 331

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSDVC 77
           I+VAVSGG DSM LL  L   LS R  G  + +A+ VD  +R     T +  +R+V +  
Sbjct: 38  IVVAVSGGKDSMSLLHYLLR-LSKRVPG-WRVAALLVDEGIRGYREYTIERFLRFVEEHG 95

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------LISEHAKTINATLIMTAH 126
              RIA     +  +  +   +   R   Y            L+++ A+ + AT++ TAH
Sbjct: 96  VEYRIARFRDEFGYTLDEIVKIGKERGLPYLPCTYCGVFRRYLMNKTAREMGATVVATAH 155

Query: 127 TFDDQLETVYM 137
             DD ++T  M
Sbjct: 156 NLDDLVQTYLM 166


>gi|188533797|ref|YP_001907594.1| C32 tRNA thiolase [Erwinia tasmaniensis Et1/99]
 gi|254790128|sp|B2VKN8|TTCA_ERWT9 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|188028839|emb|CAO96701.1| Predicted ATPase of the PP-loop superfamily [Erwinia tasmaniensis
           Et1/99]
          Length = 309

 Score = 39.7 bits (91), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 29/178 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L ++   +    I FS ++V+          H L E       
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPAHILPE------- 91

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+       +I     +S+V  K  + +T     +R  R  ++   A  +  T I   H 
Sbjct: 92  YLEQQGVEYKIVDEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGCTKIALGHH 150

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            DD L+T+++        KGM    M D    D    + RP   CR +DI  F + R 
Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIERFAIARQ 204


>gi|160915129|ref|ZP_02077342.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991]
 gi|158432928|gb|EDP11217.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991]
          Length = 319

 Score = 39.7 bits (91), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 78/210 (37%), Gaps = 29/210 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DSM LL ALH       F    F  + + H        + R V   C +L 
Sbjct: 26  IAVGVSGGKDSMVLLSALHMY---SKFKGKNFQVVGI-HIKLGFPNMDFREVVSYCEQLG 81

Query: 82  IAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           I   ++  K           N   +  L +  ++   A + E AK  N   +   H  DD
Sbjct: 82  IEFHIIDSKVYEILQKHPDANGNIKCSLCSKFKK---ATVIEAAKQFNCHKVAFGHHSDD 138

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            +ET+ M      A  G  L+     + +   ++   RP +    EDI     + NI + 
Sbjct: 139 AVETLLMN-----AIFGGKLAVFLPKMYMSRTDITFIRPLIYAFEEDILIAQQKNNIPYV 193

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           E     D   +R  ++       LH  Y K
Sbjct: 194 ESTCPNDGFTQRQEMKEM-----LHEFYKK 218


>gi|308186953|ref|YP_003931084.1| UPF0021 protein [Pantoea vagans C9-1]
 gi|308057463|gb|ADO09635.1| UPF0021 protein [Pantoea vagans C9-1]
          Length = 311

 Score = 39.7 bits (91), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    + FS I+V+   ++    E    +Y+     
Sbjct: 42  IMVCLSGGKDSYTMLEILRSL---QKSAPVNFSLIAVNLDQKQPGFPEHILPQYLESQGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             RI     +S+V  K  + +T     +R  R  ++   A  +  T I   H  DD L+T
Sbjct: 99  EYRIVEEDTYSIVKDKVPEGKTTCSLCSR-LRRGILYRVATELGCTKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYCREKDIIRF 199


>gi|312194202|ref|YP_004014263.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EuI1c]
 gi|311225538|gb|ADP78393.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EuI1c]
          Length = 603

 Score = 39.7 bits (91), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 86/205 (41%), Gaps = 27/205 (13%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  V  L   A +LVA SGG DS+ L  A   V   R+   ++   ++VDH     + 
Sbjct: 29  AVRHAVADLPPGALVLVACSGGPDSLALAAATAFVAPRRA---LRAGLLTVDHGWDGASD 85

Query: 68  DEVRYVSDVCSRLR-------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
                V      LR       +AHS  S   ++          +AR A ++  A+ + A 
Sbjct: 86  QRAESVVAQGRALRLDPVELLVAHSARSEGAAR----------DARRAALAAAAERLGAA 135

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++  HT DDQ ETV +R  R    + +G     D +L           L  R+E  R+ 
Sbjct: 136 ALLLGHTLDDQAETVLLRLARGAGARSLGAMSPRDGLLRRP-------LLGLRKEQTRAA 188

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
                +   EDP+N D  F R RVR
Sbjct: 189 CRAEGLDVWEDPTNADAAFARARVR 213


>gi|238919821|ref|YP_002933336.1| C32 tRNA thiolase [Edwardsiella ictaluri 93-146]
 gi|238869390|gb|ACR69101.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 332

 Score = 39.7 bits (91), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV---RYVSDVCS 78
           ++V +SGG DS  +L  L ++   +    + F+ ++V+   ++    E     Y+ +   
Sbjct: 63  VMVCLSGGKDSYTMLEILRNL---QQSAPVDFTLVAVNLDQKQPGFPETVLPAYLENQGI 119

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             RI     + +V  K  + +T     +R  R  ++   A  ++   I   H  DD LET
Sbjct: 120 EYRIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTANELHCNKIALGHHRDDMLET 178

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 179 LFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 220


>gi|22125890|ref|NP_669313.1| C32 tRNA thiolase [Yersinia pestis KIM 10]
 gi|45441914|ref|NP_993453.1| C32 tRNA thiolase [Yersinia pestis biovar Microtus str. 91001]
 gi|108807679|ref|YP_651595.1| C32 tRNA thiolase [Yersinia pestis Antiqua]
 gi|108811956|ref|YP_647723.1| C32 tRNA thiolase [Yersinia pestis Nepal516]
 gi|145598114|ref|YP_001162190.1| C32 tRNA thiolase [Yersinia pestis Pestoides F]
 gi|149365753|ref|ZP_01887788.1| hypothetical protein YPE_0928 [Yersinia pestis CA88-4125]
 gi|153947235|ref|YP_001400777.1| C32 tRNA thiolase [Yersinia pseudotuberculosis IP 31758]
 gi|162419399|ref|YP_001606655.1| C32 tRNA thiolase [Yersinia pestis Angola]
 gi|165926443|ref|ZP_02222275.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938602|ref|ZP_02227158.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010640|ref|ZP_02231538.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210960|ref|ZP_02236995.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400851|ref|ZP_02306357.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422098|ref|ZP_02313851.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424807|ref|ZP_02316560.1| PP-loop family protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467094|ref|ZP_02331798.1| PP-loop family protein [Yersinia pestis FV-1]
 gi|170024151|ref|YP_001720656.1| C32 tRNA thiolase [Yersinia pseudotuberculosis YPIII]
 gi|218929427|ref|YP_002347302.1| C32 tRNA thiolase [Yersinia pestis CO92]
 gi|229837856|ref|ZP_04458015.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895014|ref|ZP_04510192.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           Pestoides A]
 gi|229898417|ref|ZP_04513564.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902264|ref|ZP_04517384.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           Nepal516]
 gi|270490553|ref|ZP_06207627.1| PP-loop family protein [Yersinia pestis KIM D27]
 gi|294503652|ref|YP_003567714.1| hypothetical protein YPZ3_1542 [Yersinia pestis Z176003]
 gi|123072798|sp|Q1C7C2|TTCA_YERPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123073391|sp|Q1CIQ7|TTCA_YERPN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123777122|sp|Q7CIP8|TTCA_YERPE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830672|sp|A7FHP9|TTCA_YERP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830674|sp|A9R8Q5|TTCA_YERPG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830675|sp|A4TIV5|TTCA_YERPP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830676|sp|B1JJU2|TTCA_YERPY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|21958825|gb|AAM85564.1|AE013802_9 hypothetical protein y1998 [Yersinia pestis KIM 10]
 gi|45436777|gb|AAS62330.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775604|gb|ABG18123.1| hypothetical protein YPN_1794 [Yersinia pestis Nepal516]
 gi|108779592|gb|ABG13650.1| hypothetical protein YPA_1684 [Yersinia pestis Antiqua]
 gi|115348038|emb|CAL20963.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209810|gb|ABP39217.1| hypothetical protein YPDSF_0811 [Yersinia pestis Pestoides F]
 gi|149292166|gb|EDM42240.1| hypothetical protein YPE_0928 [Yersinia pestis CA88-4125]
 gi|152958730|gb|ABS46191.1| PP-loop family protein [Yersinia pseudotuberculosis IP 31758]
 gi|162352214|gb|ABX86162.1| PP-loop family protein [Yersinia pestis Angola]
 gi|165913476|gb|EDR32097.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921664|gb|EDR38861.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990342|gb|EDR42643.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166208140|gb|EDR52620.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958910|gb|EDR55931.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049704|gb|EDR61112.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055994|gb|EDR65772.1| PP-loop family protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750685|gb|ACA68203.1| PP-loop domain protein [Yersinia pseudotuberculosis YPIII]
 gi|229680599|gb|EEO76695.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           Nepal516]
 gi|229688707|gb|EEO80776.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694222|gb|EEO84269.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229702109|gb|EEO90130.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           Pestoides A]
 gi|262362230|gb|ACY58951.1| hypothetical protein YPD4_2044 [Yersinia pestis D106004]
 gi|262365563|gb|ACY62120.1| hypothetical protein YPD8_1435 [Yersinia pestis D182038]
 gi|270339057|gb|EFA49834.1| PP-loop family protein [Yersinia pestis KIM D27]
 gi|294354111|gb|ADE64452.1| hypothetical protein YPZ3_1542 [Yersinia pestis Z176003]
 gi|320014992|gb|ADV98563.1| putative magnesium chelatase family protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 313

 Score = 39.7 bits (91), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 95/234 (40%), Gaps = 28/234 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L S+   +    I FS I+V+   ++    E     Y+     
Sbjct: 42  VMVCLSGGKDSYTMLDILQSL---QKSAPINFSLIAVNLDQKQPGFPEDILPAYLDKQGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V     + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEIIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F + R       P N
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
              +    +R  ++  +RD D        K++      + +A+  ++P +L  H
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDH 257


>gi|313621001|gb|EFR92131.1| bifunctional protein TilS/hprT [Listeria innocua FSL S4-378]
          Length = 125

 Score = 39.7 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS  L   LH + S     K   +   ++H LRE A+ E   V   C    
Sbjct: 24  LLVAVSGGPDSFAL---LHFLWSANLVPKEAIAVAHLNHHLRENAEKEQLAVQTFCEERD 80

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARY 107
           I   +    V  +  K Q G+   AR  RY
Sbjct: 81  IPFFIEEVDVKKRAEKLQKGIEETARIVRY 110


>gi|213647076|ref|ZP_03377129.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 268

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199


>gi|161503260|ref|YP_001570372.1| C32 tRNA thiolase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|205830622|sp|A9MQT5|TTCA_SALAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|160864607|gb|ABX21230.1| hypothetical protein SARI_01329 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 311

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199


>gi|59711918|ref|YP_204694.1| C32 tRNA thiolase [Vibrio fischeri ES114]
 gi|197335040|ref|YP_002156106.1| tRNA s2C32 biosynthesis protein TtcA [Vibrio fischeri MJ11]
 gi|75353997|sp|Q5E590|TTCA_VIBF1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790149|sp|B5FE41|TTCA_VIBFM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|59480019|gb|AAW85806.1| predicted C32 tRNA thiolase [Vibrio fischeri ES114]
 gi|197316530|gb|ACH65977.1| tRNA s2C32 biosynthesis protein TtcA [Vibrio fischeri MJ11]
          Length = 307

 Score = 39.7 bits (91), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 31/179 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L S+   +    I F  I+V+          H L E       
Sbjct: 39  IMVCLSGGKDSFTMLDILMSL---KKSAPISFDLIAVNLDQKQPGFPAHILPE------- 88

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H 
Sbjct: 89  YLEKLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHH 147

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRN 185
            DD LET+++         G  L GM   ++ D    +  RP   CR +DI  +   R+
Sbjct: 148 RDDILETMFLN-----MFYGGKLKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYADMRD 201


>gi|258623292|ref|ZP_05718298.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Vibrio mimicus
           VM573]
 gi|262165675|ref|ZP_06033412.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus VM223]
 gi|258584424|gb|EEW09167.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Vibrio mimicus
           VM573]
 gi|262025391|gb|EEY44059.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus VM223]
          Length = 310

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 29/170 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L S+   +    I F  ++V+          H L E       
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---KKSAPISFELVAVNLDQKQPGFPAHVLPE------- 92

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H 
Sbjct: 93  YLESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHH 151

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            DD LET+++        KGM    + D   +     + RP   CR +DI
Sbjct: 152 RDDILETLFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|251773216|gb|EES53768.1| TRNA(Ile)-lysidine synthetase [Leptospirillum ferrodiazotrophum]
          Length = 439

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           A ++E+ +++    +   H  DD++ETV     R    +G  L G+ +      N  I R
Sbjct: 53  AYLAENPRSV----LFLGHQKDDRIETVLANLFRGTGPRG--LVGIPEK-----NGKIYR 101

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
           P L   RE+IR  L +   ++ EDP+N D    R R+R  +R
Sbjct: 102 PLLFLEREEIRQALREAGEAFMEDPANFDLGPLRNRIRLELR 143


>gi|119896776|ref|YP_931989.1| C32 tRNA thiolase [Azoarcus sp. BH72]
 gi|205830554|sp|A1K2P7|TTCA_AZOSB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|119669189|emb|CAL93102.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 306

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 13/165 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79
           ++V VSGG DS  LL  L + L +R+    +  A+++D   +    D+V   Y   +   
Sbjct: 44  VMVCVSGGKDSYTLLSCLLA-LRERAPVDFRIVAMNLDQ-KQPGFPDDVLPAYFESIGVE 101

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            RI     +S+V  K  + +T     +R  R  +I   AK I AT I   H  DD LET+
Sbjct: 102 YRIVTEDTYSIVKDKIPEGKTTCSLCSR-LRRGIIYRTAKEIGATRIALGHHRDDMLETL 160

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           ++        K M    + D    D    + RP   C   DI  F
Sbjct: 161 FLNMFFGGKIKAMPPKLVSD----DGQHVVIRPLAYCTENDIERF 201


>gi|307131365|ref|YP_003883381.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Dickeya dadantii
           3937]
 gi|306528894|gb|ADM98824.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Dickeya dadantii
           3937]
          Length = 313

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    + FS ++V+   ++    E    +Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPEHVLPQYLDSIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    + D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKLKGMPPKLVSD----DGKHVVIRPLAYCREKDIERF 199


>gi|259908376|ref|YP_002648732.1| C32 tRNA thiolase [Erwinia pyrifoliae Ep1/96]
 gi|224963998|emb|CAX55503.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Erwinia pyrifoliae
           Ep1/96]
 gi|283478316|emb|CAY74232.1| UPF0021 protein HI1371.1 [Erwinia pyrifoliae DSM 12163]
          Length = 310

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 29/178 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L ++   +    + FS ++V+          H L E       
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVSFSLVAVNLDQKQPGFPAHILPE------- 91

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   A  +  + I   H 
Sbjct: 92  YLEQLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGCSKIALGHH 150

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            DD L+T+++        KGM    M D    D    + RP   CR +DI+ F + R 
Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQRFAIARQ 204


>gi|260892095|ref|YP_003238192.1| PP-loop domain protein [Ammonifex degensii KC4]
 gi|260864236|gb|ACX51342.1| PP-loop domain protein [Ammonifex degensii KC4]
          Length = 307

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 21/143 (14%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVC 77
           A ++VA+SGG DS  L+ A   VL    +  + F    VD  + E   + D  R V D C
Sbjct: 48  ARVVVALSGGKDS--LVTAF--VLKRLGYEVLGFF---VDLGIEENNFSLDSRRAVEDFC 100

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYA---------LISEHAKTINATLIMTAHTF 128
               I   V S K    +T    A R+ R           L++E+A  +NA  + T HT 
Sbjct: 101 REKEIPLEVFSLKEKFGKTIPEVARRQERICALCGVTKRHLMNEYALAVNAYALATGHTL 160

Query: 129 DDQLETVYMRSQR---DYAEKGM 148
           DD   ++     R    Y  KG+
Sbjct: 161 DDMAASLLANLTRWDLHYLAKGL 183


>gi|168819457|ref|ZP_02831457.1| YdaO [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|200390490|ref|ZP_03217101.1| YdaO [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|199602935|gb|EDZ01481.1| YdaO [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|205343858|gb|EDZ30622.1| YdaO [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320085852|emb|CBY95628.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 311

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199


>gi|241668719|ref|ZP_04756297.1| hypothetical protein FphipA2_08125 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877251|ref|ZP_05249961.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843272|gb|EET21686.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 252

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           +++ +SGG DS GLL  LH ++ D+++  I     ++D         ++R Y+ D+    
Sbjct: 33  VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSKLRAYLDDLGVSY 91

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I     + VV  K  + +T     +R  R   I  +AK      I+  H  DD +E++ 
Sbjct: 92  EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIESLL 150

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           M        +G   S     I  D    + RP +  +  D+  F  + N      P N  
Sbjct: 151 MS----ILYQGQIKSMPPKFITQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 204

Query: 195 -TDDRFERVRVRRFVRDI 211
            + +  +R +V++ ++D+
Sbjct: 205 GSQENLKRKKVKKLIQDL 222


>gi|257091915|ref|YP_003165556.1| PP-loop domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044439|gb|ACV33627.1| PP-loop domain protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 294

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 28/205 (13%)

Query: 22  ILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEV--RYVSD 75
           +LV VSGG DS   + LLIAL      R    + F  I+++   ++     EV   Y++ 
Sbjct: 34  VLVCVSGGKDSHTLLSLLIAL------RERAPVNFRVIAMNLDQKQPGFPAEVLPDYLAK 87

Query: 76  VCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +    RI     ++VV  K  + +T     +R  R  +I   AK + A  I   H  DD 
Sbjct: 88  IGVDYRIVEQDTYAVVKDKIPEGKTTCSLCSR-LRRGVIYRTAKELGANKIALGHHRDDI 146

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCE 190
           + T+++         G  L  M   +  D    +  RP   CR  DI  F   R + +  
Sbjct: 147 VHTLFLN-----LFFGGQLKAMPPKLRTDDGCHVVIRPLAYCRESDIARF--ARGMEYPI 199

Query: 191 DPSN---TDDRFERVRVRRFVRDID 212
            P N   + D  +R ++R  + D D
Sbjct: 200 IPCNLCGSQDNLQRQKIREMMADWD 224


>gi|16760232|ref|NP_455849.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141999|ref|NP_805341.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213053470|ref|ZP_03346348.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213416969|ref|ZP_03350113.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213614398|ref|ZP_03371224.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
 gi|289823675|ref|ZP_06543287.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|81514744|sp|Q8Z783|TTCA_SALTI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|25305888|pir||AC0663 conserved hypothetical protein STY1412 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502527|emb|CAD01676.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137628|gb|AAO69190.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 311

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199


>gi|168462890|ref|ZP_02696821.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|194443213|ref|YP_002040903.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|198242873|ref|YP_002215492.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205352663|ref|YP_002226464.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856831|ref|YP_002243482.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|254790139|sp|B5FUP1|TTCA_SALDC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790140|sp|B5R4D8|TTCA_SALEP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790141|sp|B5RA25|TTCA_SALG2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790143|sp|B4T6P5|TTCA_SALNS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|16611693|gb|AAL27304.1|AF370716_7 YdaO [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|194401876|gb|ACF62098.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|195633936|gb|EDX52288.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|197937389|gb|ACH74722.1| YdaO [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205272444|emb|CAR37331.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708634|emb|CAR32956.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326623238|gb|EGE29583.1| YdaO [Salmonella enterica subsp. enterica serovar Dublin str. 3246]
 gi|326627729|gb|EGE34072.1| YdaO [Salmonella enterica subsp. enterica serovar Gallinarum str.
           9]
          Length = 311

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199


>gi|310798106|gb|EFQ32999.1| PP-loop family protein [Glomerella graminicola M1.001]
          Length = 842

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 17/161 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------KFSAISVDHCLRETAKDEVRY 72
           P  I +AVSGG DSM L    + +       ++      K SA+ VDH LR  +  E + 
Sbjct: 65  PRRIGLAVSGGVDSMALAYLFNRLREVNPLVRVVDNPLTKISALVVDHGLRPGSDAEAQG 124

Query: 73  VSDVCSRLRI--AH-SVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIM 123
           V+     LR   AH   V+W+    +        L +AAR ARY  +      ++   + 
Sbjct: 125 VARELRTLRYLRAHIDRVNWRAEGVEGDPAALPNLESAARRARYRRLGIFCAALHIESLF 184

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCD-TILYDLN 162
            AH  DDQ ETV MR    +  +G+ G+S   +    YD++
Sbjct: 185 LAHHQDDQHETVLMRLLAGHGSRGLRGISPAANIPECYDMH 225


>gi|123439490|ref|XP_001310516.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121892289|gb|EAX97586.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 280

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 70/177 (39%), Gaps = 27/177 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF------GKIKFSAI--SVDHCLRETAKDEVRYV 73
           IL+ +SGG DS+ L   L   + +++F        IKFS +   +D           +Y+
Sbjct: 31  ILIGLSGGKDSLTLTHYLSEWMREKNFSFQVVAAHIKFSNLPYGID----------AKYL 80

Query: 74  SDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D CS  ++ + +V         +N   +T +  +    R A + E A+  N   +   H
Sbjct: 81  EDFCSSRKVEYHLVEDQIRDVYLENEHKETCIHCS--RFRRAKLMELARKFNCNKLTLGH 138

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             DD + T+ M   +     GM +           N+ + RP       DI+ F  +
Sbjct: 139 HLDDIVATLIMNMTQHGRFAGMAVKLDITVGEEKYNMTMIRPLAYTPEMDIKQFCAE 195


>gi|168241213|ref|ZP_02666145.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|194447955|ref|YP_002045696.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|254790142|sp|B4TIS7|TTCA_SALHS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|194406259|gb|ACF66478.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|205339158|gb|EDZ25922.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
          Length = 311

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199


>gi|15641443|ref|NP_231075.1| hypothetical protein VC1432 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590934|ref|ZP_01678255.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153817918|ref|ZP_01970585.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823754|ref|ZP_01976421.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081604|ref|YP_002810155.1| hypothetical protein VCM66_1388 [Vibrio cholerae M66-2]
 gi|229504993|ref|ZP_04394503.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX
           330286]
 gi|229511338|ref|ZP_04400817.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33]
 gi|229518456|ref|ZP_04407900.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9]
 gi|229607996|ref|YP_002878644.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           MJ-1236]
 gi|254848552|ref|ZP_05237902.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255745811|ref|ZP_05419759.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS
           101]
 gi|262158910|ref|ZP_06030022.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE
           91/1]
 gi|298498489|ref|ZP_07008296.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|81544966|sp|Q9KS29|TTCA_VIBCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790148|sp|C3LMC8|TTCA_VIBCM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|9655931|gb|AAF94589.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547209|gb|EAX57334.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126511545|gb|EAZ74139.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518723|gb|EAZ75946.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227009492|gb|ACP05704.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229345171|gb|EEO10145.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9]
 gi|229351303|gb|EEO16244.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33]
 gi|229357216|gb|EEO22133.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX
           330286]
 gi|229370651|gb|ACQ61074.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           MJ-1236]
 gi|254844257|gb|EET22671.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255736886|gb|EET92283.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS
           101]
 gi|262029095|gb|EEY47747.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE
           91/1]
 gi|297542822|gb|EFH78872.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 310

 Score = 39.3 bits (90), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 15/163 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I F  ++V+   ++    E     Y+  +  
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +++V  K  + +T     +R  R  ++   AK + AT I   H  DD LET
Sbjct: 100 EYKIVEEDTYAIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +++        KGM    + D   +     + RP   CR +DI
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|152996252|ref|YP_001341087.1| PP-loop domain-containing protein [Marinomonas sp. MWYL1]
 gi|205830602|sp|A6VXH3|TTCA_MARMS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|150837176|gb|ABR71152.1| PP-loop domain protein [Marinomonas sp. MWYL1]
          Length = 279

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 24/230 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L ++   ++   I FS ++V+   ++    E     Y+ ++  
Sbjct: 41  VMVCLSGGKDSYTMLEILRNL---QASAPINFSIVAVNLDQKQPGFPEHILPAYLEELGV 97

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I     +S+V     + +T     +R  R +L    A+ I AT I   H  DD LET
Sbjct: 98  DFHILERDTYSIVKEIVPEGKTTCGLCSRLRRGSLYG-FAEEIGATKIALGHHRDDILET 156

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPS 193
           +++         G  L  M   +L D    I  RP   C+ EDI +F + +       P 
Sbjct: 157 LFLNMFF-----GGKLKSMPPKLLSDDGKHIVIRPLAYCKEEDIEAFSVMKEYPII--PC 209

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           N     E ++ R+ V+D+    L    K+F      + +A+  ++P +L 
Sbjct: 210 NLCGSQENLQ-RQVVKDM----LQKWEKEFPGRTESMFSAIQNVVPSHLA 254


>gi|121730376|ref|ZP_01682729.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|121627872|gb|EAX60459.1| conserved hypothetical protein [Vibrio cholerae V52]
          Length = 309

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 15/163 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L S+   +    I F  ++V+   ++    E     Y+  +  
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---QKSAPISFELVAVNLDQKQPGFPEHVLPEYLESLGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +++V  K  + +T     +R  R  ++   AK + AT I   H  DD LET
Sbjct: 100 EYKIVEEDTYAIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHHRDDILET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +++        KGM    + D   +     + RP   CR +DI
Sbjct: 159 LFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|56413420|ref|YP_150495.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|168235782|ref|ZP_02660840.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|194735405|ref|YP_002114682.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197362343|ref|YP_002141980.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|204927784|ref|ZP_03218985.1| YdaO [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238911960|ref|ZP_04655797.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|81360568|sp|Q5PHS1|TTCA_SALPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790145|sp|B5BJ71|TTCA_SALPK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790146|sp|B4TWA6|TTCA_SALSV RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|56127677|gb|AAV77183.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194710907|gb|ACF90128.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|197093820|emb|CAR59303.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197291136|gb|EDY30489.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|204323126|gb|EDZ08322.1| YdaO [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|322614907|gb|EFY11832.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619347|gb|EFY16227.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623159|gb|EFY20001.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628448|gb|EFY25236.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634856|gb|EFY31587.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638579|gb|EFY35274.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640886|gb|EFY37534.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645385|gb|EFY41913.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651730|gb|EFY48102.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654370|gb|EFY50692.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322661211|gb|EFY57437.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662661|gb|EFY58868.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667728|gb|EFY63888.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322671860|gb|EFY67981.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677095|gb|EFY73159.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680243|gb|EFY76282.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685328|gb|EFY81324.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194309|gb|EFZ79505.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199387|gb|EFZ84481.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204135|gb|EFZ89148.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323205859|gb|EFZ90822.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323217186|gb|EGA01907.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220065|gb|EGA04533.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227264|gb|EGA11434.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232048|gb|EGA16155.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234575|gb|EGA18662.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238028|gb|EGA22087.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243371|gb|EGA27390.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246178|gb|EGA30163.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253679|gb|EGA37506.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323259112|gb|EGA42758.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260420|gb|EGA44033.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266492|gb|EGA49979.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271216|gb|EGA54643.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 311

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199


>gi|294668241|ref|ZP_06733348.1| tRNA(Ile)-lysidine synthase [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291309949|gb|EFE51192.1| tRNA(Ile)-lysidine synthase [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 137

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           L +  HI  A+SGG DS+ +L+ L S L+ R    IK +A+ V H L++ A   + +  
Sbjct: 15 GLSHARHIEAALSGGLDSV-VLLHLLSRLAGRL--NIKLTAVHVHHGLQDEADGWLEFCR 71

Query: 75 DVCSRLRI 82
          D C+RL +
Sbjct: 72 DYCARLAV 79


>gi|168230078|ref|ZP_02655136.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
 gi|194471984|ref|ZP_03077968.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|194458348|gb|EDX47187.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|205335366|gb|EDZ22130.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
          Length = 311

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVQENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199


>gi|161613875|ref|YP_001587840.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|205830623|sp|A9MXN4|TTCA_SALPB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|161363239|gb|ABX67007.1| hypothetical protein SPAB_01611 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 311

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199


>gi|326392440|ref|ZP_08213837.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325991517|gb|EGD50112.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 87

 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
          I++ VSGG DS+ +L  L+++   +    +K   + V+H +R E AK + ++V D+C +L
Sbjct: 21 IVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNHMIRGEEAKRDAQFVEDMCRKL 77

Query: 81 RI 82
          ++
Sbjct: 78 KL 79


>gi|262171527|ref|ZP_06039205.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus MB-451]
 gi|261892603|gb|EEY38589.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus MB-451]
          Length = 310

 Score = 39.3 bits (90), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 29/170 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L S+   +    I F  ++V+          H L E       
Sbjct: 43  IMVCLSGGKDSFTMLDILMSL---KKSAPISFELVAVNLDQKQPGFPAHVLPE------- 92

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H 
Sbjct: 93  YLESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSR-LRRGILYRTAKELGATKIALGHH 151

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            DD LET+++        KGM    + D   +     + RP   CR +DI
Sbjct: 152 RDDILETLFLNMFYGGKIKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|323213900|gb|EFZ98671.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
          Length = 310

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199


>gi|167992837|ref|ZP_02573933.1| YdaO [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205329037|gb|EDZ15801.1| YdaO [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|267993586|gb|ACY88471.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|332988541|gb|AEF07524.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 311

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199


>gi|27365903|ref|NP_761431.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio vulnificus
           CMCP6]
 gi|81448038|sp|Q8D9J0|TTCA_VIBVU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|27362052|gb|AAO10958.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus
           CMCP6]
          Length = 310

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 29/170 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L S+   +    I FS ++V+          H L E       
Sbjct: 43  IMVCLSGGKDSFTMLDILISL---QKSAPISFSLVAVNLDQKQPGFPAHVLPE------- 92

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   AK + AT I   H 
Sbjct: 93  YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSR-LRRGILYRTAKELGATKIALGHH 151

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            DD LET+++        KGM    + D   +     + RP   CR +DI
Sbjct: 152 RDDILETLFLNMFYGGKMKGMPPKLVSDNGEH----VVIRPLAYCREKDI 197


>gi|16764998|ref|NP_460613.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167549859|ref|ZP_02343617.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|168260142|ref|ZP_02682115.1| YdaO [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|197248499|ref|YP_002146377.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197264456|ref|ZP_03164530.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|81522812|sp|Q8ZP88|TTCA_SALTY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790138|sp|B5F5C0|TTCA_SALA4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|16420181|gb|AAL20572.1| putative ATPase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197212202|gb|ACH49599.1| YdaO [Salmonella enterica subsp. enterica serovar Agona str. SL483]
 gi|197242711|gb|EDY25331.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|205324962|gb|EDZ12801.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205350986|gb|EDZ37617.1| YdaO [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|261246846|emb|CBG24662.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158182|emb|CBW17680.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912645|dbj|BAJ36619.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224280|gb|EFX49343.1| tRNACytosine32-2-thiocytidine synthetase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323129923|gb|ADX17353.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 311

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199


>gi|193217036|ref|YP_002000278.1| PP-loop superfamily ATPase/cell cycle protein [Mycoplasma
           arthritidis 158L3-1]
 gi|193002359|gb|ACF07574.1| PP-loop superfamily ATPase/cell cycle protein [Mycoplasma
           arthritidis 158L3-1]
          Length = 307

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 23  LVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           L+AVSGG DSM LL     H+V+              V++  RE +  +   V   C   
Sbjct: 20  LIAVSGGPDSMFLLNLFKEHNVV-----------VAHVNYNKREDSNIDETIVRSYCKSH 68

Query: 81  RIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            I + + S K      G     AR+ RY    +         ++ AH  DD LET  M+ 
Sbjct: 69  SIPYEIYSIKKGTNIKGNFQDWARKERYHFFKQIYDKYQCDYLLLAHHKDDFLETAIMQK 128

Query: 140 Q 140
           +
Sbjct: 129 E 129


>gi|293606581|ref|ZP_06688938.1| cell cycle protein MesJ [Achromobacter piechaudii ATCC 43553]
 gi|292815057|gb|EFF74181.1| cell cycle protein MesJ [Achromobacter piechaudii ATCC 43553]
          Length = 231

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 23/103 (22%)

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--------DTILYDLNLWISRPF 169
            A+L++ AH  DDQ ETV +R  R     G G+ GM         D I Y       RP+
Sbjct: 16  GASLVLLAHHRDDQAETVLLRLLR-----GAGVLGMAAMSEVSQRDGITY------LRPW 64

Query: 170 LRCRREDI--RSFLLQRNISW--CEDPSNTDDRFERVRVRRFV 208
           L   R  I   +  +++   W   +DP+N D R+ R  VR  +
Sbjct: 65  LGQDRATILEAADAVRQASGWQAVQDPTNADPRYTRAAVRELL 107


>gi|256826250|ref|YP_003150210.1| tRNA(Ile)-lysidine synthetase [Kytococcus sedentarius DSM 20547]
 gi|256689643|gb|ACV07445.1| tRNA(Ile)-lysidine synthetase [Kytococcus sedentarius DSM 20547]
          Length = 356

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 76/198 (38%), Gaps = 19/198 (9%)

Query: 22  ILVAVSGGSDSMGLL--IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +L+A SGG+DS+ ++  +A  +    R       +A  VDH L+  ++         C  
Sbjct: 31  VLLACSGGADSVAMVAAVAFEADRLRRGGASPVVAAGVVDHGLQAGSEQVAAGAVARCRA 90

Query: 80  LRIAHSVVSWKNSKPQTG--------LMAAAREARYALISEHAKTIN-ATLIMTAHTFDD 130
           L I   V S +    +TG            A   R+A       T    T    AHT DD
Sbjct: 91  LGI-EQVWSERVEVTRTGEGPEAEARRARHAALERWATALAGGPTGGVGTETWLAHTRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q E V +   R    +   L+GM      DL     RPFL       R       +    
Sbjct: 150 QAEQVLLGLLRGAGTRS--LAGMAPG-RGDL----VRPFLAVSAATTRRACRDLGLPVHH 202

Query: 191 DPSNTDDRFERVRVRRFV 208
           DP N D RF RVR RR +
Sbjct: 203 DPHNDDPRFTRVRARRVL 220


>gi|254168734|ref|ZP_04875576.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
 gi|289596819|ref|YP_003483515.1| PP-loop domain protein [Aciduliprofundum boonei T469]
 gi|197622360|gb|EDY34933.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
 gi|289534606|gb|ADD08953.1| PP-loop domain protein [Aciduliprofundum boonei T469]
          Length = 308

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 27/138 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCS 78
           IL+AVSGG DSM  +  +H +     FGK   ++  A++VD  + +  ++  +  +    
Sbjct: 50  ILIAVSGGKDSMLTMYQMHKI-----FGKWRDLELVAVTVDEGIGDFRRNCAKVANIYAR 104

Query: 79  RLRIAHSVVSWKNS---------------KPQTGLMAAAREARYALISEHAKTINATLIM 123
            L I H V+++K                 KP T      R+    +++ +AK I A  ++
Sbjct: 105 ELGIEHEVITFKEYLGITTDDVARVDKELKPCTYCGVFRRK----VLNMYAKEIGANYLI 160

Query: 124 TAHTFDDQLETVYMRSQR 141
                DD  +++ M   R
Sbjct: 161 LGLNLDDIAQSIIMNITR 178


>gi|62180219|ref|YP_216636.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224583854|ref|YP_002637652.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|75483213|sp|Q57P06|TTCA_SALCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790144|sp|C0Q3V6|TTCA_SALPC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|62127852|gb|AAX65555.1| putative ATPase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224468381|gb|ACN46211.1| hypothetical protein SPC_2080 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714691|gb|EFZ06262.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 311

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           I+V +SGG DS  +L  L ++   +    I FS ++V+   ++    E     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPINFSLVAVNLDQKQPGFPEHILPAYLEPLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRF 199


>gi|294636268|ref|ZP_06714674.1| PP-loop family protein [Edwardsiella tarda ATCC 23685]
 gi|291090443|gb|EFE23004.1| PP-loop family protein [Edwardsiella tarda ATCC 23685]
          Length = 311

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV---RYVSDVCS 78
           ++V +SGG DS  +L  L ++   +    + F+ ++V+   ++    E     Y+     
Sbjct: 42  VMVCLSGGKDSYTMLEILRNL---QQSAPVDFTLVAVNLDQKQPGFPETVLPAYLDAQGI 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             RI     + +V  K  + +T     +R  R  ++   A  +N   I   H  DD LET
Sbjct: 99  EYRIVEEDTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELNCNKIALGHHRDDMLET 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 199


>gi|167586804|ref|ZP_02379192.1| tRNA(Ile)-lysidine synthetase [Burkholderia ubonensis Bu]
          Length = 370

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 88/223 (39%), Gaps = 43/223 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A I +A SGG DS  LL A     + R  G  +  A+ V H L   A     + +   ++
Sbjct: 28  ARIAIAYSGGLDSSVLLDA-----AVRVAGASRCIALHVHHGLSANADAWAAHAAASAAK 82

Query: 80  LRIAHS---VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           L +A     V   +NS    G+ A+ARE+RYA +    +   A ++  A   DDQ ETV 
Sbjct: 83  LGVAFDSMRVDVPRNSG--AGIEASARESRYAALDAMCERHGAAVLWLAQHADDQAETVL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS--------------FLL 182
           ++  R     G+                   P  R     +                +  
Sbjct: 141 LQLLRGAGIAGIA---------------AMAPRYRPAAARVERVRPLLRLLRAQLERYAA 185

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
           QR ++W +D SN D RF R  +R  V    L AL +    F+D
Sbjct: 186 QRELAWIDDESNQDTRFARNALRVDV----LPALAVHFPGFRD 224


>gi|18309972|ref|NP_561906.1| hypothetical protein CPE0990 [Clostridium perfringens str. 13]
 gi|110801239|ref|YP_695693.1| ExsB family protein [Clostridium perfringens ATCC 13124]
 gi|110801904|ref|YP_698381.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|168208060|ref|ZP_02634065.1| ExsB family protein [Clostridium perfringens E str. JGS1987]
 gi|168211804|ref|ZP_02637429.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626]
 gi|169341156|ref|ZP_02863249.1| ExsB family protein [Clostridium perfringens C str. JGS1495]
 gi|18144650|dbj|BAB80696.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110675886|gb|ABG84873.1| ExsB family protein [Clostridium perfringens ATCC 13124]
 gi|110682405|gb|ABG85775.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|169299763|gb|EDS81815.1| ExsB family protein [Clostridium perfringens C str. JGS1495]
 gi|170660645|gb|EDT13328.1| ExsB family protein [Clostridium perfringens E str. JGS1987]
 gi|170710238|gb|EDT22420.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626]
          Length = 244

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 22/200 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--------DHCLRETAKD-EVRY 72
           I V +SGG DS+ LL   H + + + F   KF  I++        +  L E  K+ +V +
Sbjct: 27  IAVGLSGGKDSLTLL---HILKNYQRFSPEKFELIAITLNPGGVDNSPLHELCKNIDVPF 83

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +  I   V   K  K    L A  R  R AL +++A+ +    +   H  DD L
Sbjct: 84  YE---IQTDIKEIVFDIKKEKNPCSLCANLR--RGAL-NDNAEKLGCNKVALGHHKDDAL 137

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +      + +G        + ++  NL + RP +      IR  + + N    ++P
Sbjct: 138 ETLML----SISYEGRINCFSPKSFMHKNNLTLIRPMVFIEESQIRKAVAEYNFPVIKNP 193

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D + +R  ++  +R +D
Sbjct: 194 CPADGKTKREDMKNLIRSLD 213


>gi|301106300|ref|XP_002902233.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans
           T30-4]
 gi|262098853|gb|EEY56905.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans
           T30-4]
          Length = 665

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 11/179 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +H+ V++SGG DSM +   +H +      G     A+ +D+  R  +  E  YV   C R
Sbjct: 225 SHMAVSLSGGVDSMVVAYLMHKL--KEKHGDFTIVAVHLDYGNRPESGAECDYVRRWCER 282

Query: 80  LRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I   V      K  T         +RE RY+  +E  +  +   +   H   D  E V
Sbjct: 283 FGIVFHVRRIDEVKRATTRRDDYEKISREIRYSTYAEVMQKYHIPGMCFGHHRGDVQENV 342

Query: 136 YMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
                +  +   + L+GM   +++  + +W  RP L   ++ I  F  +  + + +D +
Sbjct: 343 ISNMMKGLSL--LNLNGMQASSVVNGVRIW--RPLLDLEKDVIFEFAHRYGVPYFKDTT 397


>gi|218779090|ref|YP_002430408.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760474|gb|ACL02940.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 252

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           + V +SGG DS  L+  L   LS R   K     I +D    +++ DE+ +Y   +  RL
Sbjct: 40  VAVGISGGKDSFTLMWILRERLS-RIPVKYHLEGIHIDPGFDDSSADEIAQYCESMNYRL 98

Query: 81  RIAHS---VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           R+  +   + +  +   +      +R  R  L  E A+ +  T I   H  DD +ET++M
Sbjct: 99  RVEKTDFGIRAHSDENRENPCFLCSRLRRQRLF-ELAQEMGCTKIALGHHKDDLIETLFM 157


>gi|238782626|ref|ZP_04626657.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia bercovieri
           ATCC 43970]
 gi|238716553|gb|EEQ08534.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia bercovieri
           ATCC 43970]
          Length = 313

 Score = 38.9 bits (89), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 29/256 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L S+   +    I F+ I+V+   ++    E     Y+     
Sbjct: 42  VMVCLSGGKDSYTMLDILQSL---QKSAPINFTLIAVNLDQKQPGFPEDILPAYLDKQGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V     + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEIIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F + R       P N
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH-MRSII 250
              +    +R  ++  +RD D        K++      + +A+  ++P +L  H +    
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDHKLFDFK 263

Query: 251 AISQDILNIDSTLLFY 266
           AI+ D   +D   L +
Sbjct: 264 AITHDSEVVDGGDLAF 279


>gi|322832780|ref|YP_004212807.1| PP-loop domain protein [Rahnella sp. Y9602]
 gi|321167981|gb|ADW73680.1| PP-loop domain protein [Rahnella sp. Y9602]
          Length = 311

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 29/177 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L ++   +    + FS ++V+          H L E       
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPAHILPE------- 91

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     +S+V  K  + +T     +R  R  ++   A  +  T I   H 
Sbjct: 92  YLDALGVEYKIVTEDTYSIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGCTKIALGHH 150

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            DD L+T+++        KGM    M D    D    + RP   CR +DI  F + R
Sbjct: 151 RDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAIAR 203


>gi|292488333|ref|YP_003531215.1| hypothetical protein EAMY_1857 [Erwinia amylovora CFBP1430]
 gi|292899532|ref|YP_003538901.1| hypothetical protein EAM_1822 [Erwinia amylovora ATCC 49946]
 gi|291199380|emb|CBJ46497.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
 gi|291553762|emb|CBA20807.1| UPF0021 protein HI1371.1 [Erwinia amylovora CFBP1430]
 gi|312172472|emb|CBX80729.1| UPF0021 protein HI1371.1 [Erwinia amylovora ATCC BAA-2158]
          Length = 309

 Score = 38.9 bits (89), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 29/178 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L ++   +    + FS ++V+          H L E       
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVSFSLVAVNLDQKQPGFPAHILPE------- 91

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +  + +I     +S+V  K  + +T     +R  R  ++   A  +  + I   H 
Sbjct: 92  YLEKLGVQYKIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGCSKIALGHH 150

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            DD L+T+++        KGM    M D    D    + RP   CR +DI+ F   R 
Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQRFAFARQ 204


>gi|218884033|ref|YP_002428415.1| ATPase, PP-loop superfamily [Desulfurococcus kamchatkensis 1221n]
 gi|218765649|gb|ACL11048.1| ATPase, PP-loop superfamily [Desulfurococcus kamchatkensis 1221n]
          Length = 321

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 53/236 (22%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLL---------------IALHSVLSDRSFG 49
           +E++R +   ++ P   +++AVSGG DSM LL               I LH  L    F 
Sbjct: 36  VETIRKY--RMIKPGDSVVIAVSGGKDSMSLLTVLVKQARELGIREVIGLHLNLGIGGFS 93

Query: 50  KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL 109
           ++  S +  ++C R   K  V  + D+   L ++ S ++ K  +P   +    +  RY +
Sbjct: 94  ELVESVVR-EYCERLGVKCHVIRLRDL---LGLSISELASKARRPPCSVCGLVK--RY-I 146

Query: 110 ISEHAKTINATLIMTAHTFDD----QLETVYMRSQRDYA-------EKGMGLSGMCDTIL 158
            +    T+NA++++T H  DD     L+ +Y+   R  A       E+G+ +        
Sbjct: 147 FTVSTMTVNASVLVTGHHLDDVVKYALKNIYVGDYRSLASLKPVSVEEGLPVK------- 199

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCED--PSNTDDRFERVRVRRFVRDID 212
                  +RP +     DI ++     I + E   P   +   E+  VR F+ +++
Sbjct: 200 -------ARPLISVGERDIETYAKLSGIPYVEAKCPFKHEGDAEKA-VRVFISELE 247


>gi|134302168|ref|YP_001122137.1| ATPase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|205830357|sp|A4IYL5|TTCA2_FRATW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|134049945|gb|ABO47016.1| putative ATPase, PP-loop family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 251

 Score = 38.9 bits (89), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 16/200 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           +++ +SGG DS GLL  LH ++ D+++  I     ++D         ++R Y+ D+    
Sbjct: 28  VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I     + V+  K  + +T     +R  R   I  +AK      I+  H  DD ++++ 
Sbjct: 87  EIETKNTYGVIIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHHDDLIQSLL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           M        +G   S     +  D    + RP +  +  D+  F  + N      P N  
Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199

Query: 195 -TDDRFERVRVRRFVRDIDL 213
            + +  +R +V++ ++D+ L
Sbjct: 200 GSQENLKRKKVKKLIQDLAL 219


>gi|218132480|ref|ZP_03461284.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992590|gb|EEC58592.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC
           43243]
          Length = 247

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 14/124 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           I V +SGG DS+ LL ALH +   R F     +  A++V+  +      +   +S +C  
Sbjct: 26  IAVGISGGKDSLTLLYALHGL---RRFYPNNFEIEAVTVNAGIEGM---DFSPISRLCDE 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L + ++V+         N + ++   A   + R    ++ A  +    I  AH  DD +E
Sbjct: 80  LDVNYTVIDTDIYDIVYNIRRESNPCALCAKLRKGAFNKKAAELGCNKIAYAHHKDDVIE 139

Query: 134 TVYM 137
           T  M
Sbjct: 140 TFMM 143


>gi|126460252|ref|YP_001056530.1| PP-loop domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249973|gb|ABO09064.1| PP-loop domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 327

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 25/144 (17%)

Query: 16  LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDE 69
           L+ P  ++ VAVSGG DS+ LL  L  +    +   ++  A +++      C    ++ +
Sbjct: 46  LIVPGDYVAVAVSGGKDSLVLLYILGKLRERGALRGVRLEAFTINEGHPYSCFYRMSRRD 105

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------- 121
             YV ++  +  + ++V  +K+    T +  + R A+ A    H  TI+  L        
Sbjct: 106 --YVRELAEKFGVEYNVYHFKDIFGVTAMELSERLAK-AGHEVHMCTIDGVLRRRAMNII 162

Query: 122 --------IMTAHTFDDQLETVYM 137
                   I TAH  DD+ +TV +
Sbjct: 163 GKRRGWTKIATAHNLDDEAQTVML 186


>gi|118497755|ref|YP_898805.1| ATPase [Francisella tularensis subsp. novicida U112]
 gi|194323727|ref|ZP_03057503.1| hypothetical protein FTE_0562 [Francisella tularensis subsp.
           novicida FTE]
 gi|208779820|ref|ZP_03247164.1| hypothetical protein FTG_0565 [Francisella novicida FTG]
 gi|254374565|ref|ZP_04990046.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|205830356|sp|A0Q736|TTCA2_FRATN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|118423661|gb|ABK90051.1| predicted ATPase of the PP-loop superfamily [Francisella novicida
           U112]
 gi|151572284|gb|EDN37938.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|194322091|gb|EDX19573.1| hypothetical protein FTE_0562 [Francisella tularensis subsp.
           novicida FTE]
 gi|208744275|gb|EDZ90575.1| hypothetical protein FTG_0565 [Francisella novicida FTG]
          Length = 253

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 53/252 (21%), Positives = 110/252 (43%), Gaps = 37/252 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           +++ +SGG DS GLL  LH ++ D+++  I     ++D         ++R Y+ D+    
Sbjct: 28  VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I     + VV  K  + +T     +R  R   I  +AK      I+  H  DD ++++ 
Sbjct: 87  EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           M        +G   S     +  D    + RP +  +  D+  F  + N      P N  
Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199

Query: 195 -TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN--NAVAMLIPKYLTVHMRSIIA 251
            + +  +R +V++ ++D+ L          ++ +V  N  N+++ ++P +L         
Sbjct: 200 GSQENLKRKKVKKLIQDLAL----------ENPKVPSNILNSLSNVLPSHL--------- 240

Query: 252 ISQDILNIDSTL 263
           + +++ +ID+T+
Sbjct: 241 MDRNLFDIDATI 252


>gi|237731651|ref|ZP_04562132.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter sp.
           30_2]
 gi|226907190|gb|EEH93108.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter sp.
           30_2]
          Length = 311

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 29/173 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L ++   +    I FS ++V+          H L E       
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPISFSLVAVNLDQKQPGFPGHILPE------- 91

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +    +I     + +V  K  + +T     +R  R  ++   A  + AT I   H 
Sbjct: 92  YLEQLGVEYKIVEENTYGIVKDKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHH 150

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            DD L+T+++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERF 199


>gi|52425142|ref|YP_088279.1| MesJ protein [Mannheimia succiniciproducens MBEL55E]
 gi|81387134|sp|Q65TL6|TTCA_MANSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|52307194|gb|AAU37694.1| MesJ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 312

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 15/170 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  LL  L   L+ R    + F  ++V+   ++    E     Y+S +  
Sbjct: 43  VMVCLSGGKDSYTLLDIL---LNLRHNAPVHFDIVAVNLDQKQPGFPEHILPEYLSSIGV 99

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD LET
Sbjct: 100 EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDMLET 158

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           +++        K M    + D    D    + RP   C+ +DI  + + +
Sbjct: 159 LFLNMFYGGKLKSMPPKLVSD----DGKQIVIRPLAYCKEKDIEKYAVAK 204


>gi|238749377|ref|ZP_04610882.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia rohdei ATCC
           43380]
 gi|238712032|gb|EEQ04245.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia rohdei ATCC
           43380]
          Length = 313

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 28/234 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L S+   +    I F+ I+V+   ++    E     Y+     
Sbjct: 42  VMVCLSGGKDSYTMLDILQSL---QKSAPINFTLIAVNLDQKQPGFPEDILPAYLDKQGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V     + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEIIPEGKTTCSLCSR-LRRGILYRTASELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F + R       P N
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVAREYPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
              +    +R  ++  +RD D        K++      + +A+  ++P +L  H
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDH 257


>gi|51596578|ref|YP_070769.1| C32 tRNA thiolase [Yersinia pseudotuberculosis IP 32953]
 gi|186895636|ref|YP_001872748.1| C32 tRNA thiolase [Yersinia pseudotuberculosis PB1/+]
 gi|81639280|sp|Q66A78|TTCA_YERPS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830673|sp|B2K5E0|TTCA_YERPB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|51589860|emb|CAH21492.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186698662|gb|ACC89291.1| PP-loop domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 313

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 94/236 (39%), Gaps = 32/236 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L S+   +    I FS I+V+   ++    E     Y+     
Sbjct: 42  VMVCLSGGKDSYTMLDILQSL---QKSAPINFSLIAVNLDQKQPGFPEDILPAYLDKQGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V       +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEIIPDGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-----ISWC 189
           +++        KGM    M D    D    + RP   CR +DI  F + R       + C
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPIIPCNLC 213

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
               N     +R  ++  +RD D        K++      + +A+  ++P +L  H
Sbjct: 214 GSQPN----LQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDH 257


>gi|332184252|gb|AEE26506.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf.
           novicida 3523]
          Length = 253

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 16/201 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           +++ +SGG DS GLL  LH ++ D+++  I     ++D         ++R Y+ D+    
Sbjct: 28  VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I     + VV  K  + +T     +R  R   I  +AK      I+  H  DD ++++ 
Sbjct: 87  EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           M        +G   S     I  D    + RP +  +  D+  F  + N      P N  
Sbjct: 146 MS----ILYQGQIKSMPPKFITQDGENTVIRPMVLVQEGDLIEFAKEENFPII--PCNLC 199

Query: 195 -TDDRFERVRVRRFVRDIDLH 214
            + +  +R +V++ ++D+ L 
Sbjct: 200 GSQENLKRKKVKKLIQDLALE 220


>gi|310767700|gb|ADP12650.1| C32 tRNA thiolase [Erwinia sp. Ejp617]
          Length = 310

 Score = 38.5 bits (88), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 29/177 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKDEVR 71
           I+V +SGG DS  +L  L ++   +    + FS ++V+          H L E       
Sbjct: 42  IMVCLSGGKDSYTMLEILRNL---QQSAPVSFSLVAVNLDQKQPGFPAHILPE------- 91

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y+  +     I     +S+V  K  + +T     +R  R  ++   A  +  + I   H 
Sbjct: 92  YLEQLGVEYNIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTASELGCSKIALGHH 150

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            DD L+T+++        KGM    M D    D    + RP   CR +DI+ F + R
Sbjct: 151 RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQRFAIAR 203


>gi|315094257|gb|EFT66233.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL060PA1]
          Length = 311

 Score = 38.5 bits (88), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 19/205 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L  AL S  + R   +     + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           ++ + +      D+ +R  +   V  V    + P     AA    R AL+          
Sbjct: 65  QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLD----VAGDE 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++  HT DDQ E V +   R     G G + +          W   P L  RR      
Sbjct: 121 PVLLGHTRDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQA 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
             +  +   +DP N D RF R RVR
Sbjct: 174 CREWEVEPWQDPHNGDPRFLRSRVR 198


>gi|314965441|gb|EFT09540.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL082PA2]
 gi|315104911|gb|EFT76887.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA2]
 gi|327329235|gb|EGE70995.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL103PA1]
          Length = 311

 Score = 38.5 bits (88), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 19/205 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L  AL S  + R   +     + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           ++ + +      D+ +R  +   V  V    + P     AA    R AL+          
Sbjct: 65  QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLD----VAGDE 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++  HT DDQ E V +   R     G G + +          W   P L  RR      
Sbjct: 121 PVLLGHTRDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQA 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
             +  +   +DP N D RF R RVR
Sbjct: 174 CREWEVEPWQDPHNGDPRFLRSRVR 198


>gi|314922405|gb|EFS86236.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL001PA1]
          Length = 311

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V  SGG DS+ L  AL S  + R   +     + VDH L++ + +      D+ +R  +
Sbjct: 28  VVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQLQQGSDEVAERTRDLLARRGM 84

Query: 83  AHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              V  V    + P     AA    R AL+           ++  HT DDQ E V +   
Sbjct: 85  DACVRRVDVDANDPDGPEAAARTARRAALLD----VAGDEPVLLGHTRDDQAEQVLLSLA 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G G + +          W   P L  RR        +  +   +DP N D RF 
Sbjct: 141 R-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQACREWEVEPWQDPHNGDPRFL 193

Query: 201 RVRVR 205
           R RVR
Sbjct: 194 RSRVR 198


>gi|254373114|ref|ZP_04988603.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570841|gb|EDN36495.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 251

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 16/200 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           +++ +SGG DS GLL  LH ++ D+++  I     ++D         ++R Y+ D+    
Sbjct: 28  VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I     + VV  K  + +T     +R  R   I  +AK      I+  H  DD ++++ 
Sbjct: 87  EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           M        +G   S     +  D    + RP +  +  D+  F  + N      P N  
Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGKNTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199

Query: 195 -TDDRFERVRVRRFVRDIDL 213
            + +  +R +V++ ++D+ L
Sbjct: 200 GSQENLKRKKVKKLIQDLAL 219


>gi|293400608|ref|ZP_06644753.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305634|gb|EFE46878.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 315

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DSM LL ALH       F   +F  + + H        E + V+  C  L 
Sbjct: 26  IGVGVSGGKDSMVLLTALHMYA---KFCDRRFEVVGI-HIKLGFPNMEFQEVTQFCEHLG 81

Query: 82  IA-HSVVS-----WKNSKPQTGLMAAAREARY--ALISEHAKTINATLIMTAHTFDDQLE 133
           I  H + S      K +  + G +  +  +++  A +++ AK ++   +   H  DD +E
Sbjct: 82  IEFHQIDSKVYEILKRNLDKNGRIRCSLCSKFKKATVNQAAKDLHCNKVAFGHHSDDAIE 141

Query: 134 TVYMRS 139
           T+ M +
Sbjct: 142 TLLMNA 147


>gi|167037749|ref|YP_001665327.1| PP-loop domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116163|ref|YP_004186322.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856583|gb|ABY94991.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929254|gb|ADV79939.1| PP-loop domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 235

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 81/204 (39%), Gaps = 30/204 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           I V VSGG DS+ LL  LH +   ++F   KF  + +   L     D    V + C    
Sbjct: 24  IAVGVSGGKDSVTLLYGLHLL---KNFYPEKFEVMGLMLTLGYDNFDPTP-VENFCQEKG 79

Query: 79  ------RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                    I   V  ++  +    L A  R  R AL +  AK      +  AH +DD +
Sbjct: 80  IPFFIKETDIKKIVFDYRKEENPCSLCANLR--RGAL-NNFAKEKGCNKVALAHHYDDLI 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +T  M          +  +G   T      L    + + RP +  + +DIRS + + N+ 
Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLP 187

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211
             ++P   +   +R  +R  + D+
Sbjct: 188 VVKNPCPVEGHTKRHYIRNLLIDL 211


>gi|255953977|ref|XP_002567741.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589452|emb|CAP95596.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 687

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 56/143 (39%), Gaps = 19/143 (13%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVL-SDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P    +AVSGG+DSM L      +  S    G I  +A  VDH  R  +  E + V
Sbjct: 44  TLQLPQRFGIAVSGGADSMALAYLCKQLERSSDVAGAISVTAFVVDHRARPESTIEAQKV 103

Query: 74  SDVCSRLRIAHSVVS--WKNSKP-QTGLMAA---------------AREARYALISEHAK 115
           +     + I   ++S  W ++ P QT L +                AR  R+  +     
Sbjct: 104 AGWLRDMDIRTHILSLDWSDTTPSQTQLSSPKSGASSPMPSAFETHARRLRFQALGIACH 163

Query: 116 TINATLIMTAHTFDDQLETVYMR 138
                 ++  H  DD +ET   R
Sbjct: 164 EFKLETLLLGHHQDDNIETTIWR 186


>gi|238796410|ref|ZP_04639919.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia mollaretii
           ATCC 43969]
 gi|238719855|gb|EEQ11662.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia mollaretii
           ATCC 43969]
          Length = 318

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 95/234 (40%), Gaps = 28/234 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L S+   +    I F+ I+V+   ++    E     Y+     
Sbjct: 47  VMVCLSGGKDSYTMLDILQSL---QKSAPINFTLIAVNLDQKQPGFPEDILPAYLDKQGV 103

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V     + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 104 EYKIVEENTYGIVKEIIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 162

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F + R       P N
Sbjct: 163 LFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII--PCN 216

Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
              +    +R  ++  +RD D        K++      + +A+  ++P +L  H
Sbjct: 217 LCGSQPNLQRQVIKDMLRDWD--------KQYPGRIETMFSAMQNVVPSHLNDH 262


>gi|37519970|ref|NP_923347.1| hypothetical protein gvip035 [Gloeobacter violaceus PCC 7421]
 gi|35210962|dbj|BAC88342.1| ycf62 [Gloeobacter violaceus PCC 7421]
          Length = 278

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
           AAAR  RY  + + A+ +    ++T HT  D+ ETV     R     G+G       +  
Sbjct: 55  AAARAWRYCWLEQIARGLALERVVTGHTLSDRAETVLFNLLRGSGGAGLGSLDWERPLGG 114

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
            + L   RP L   R +  ++ L  ++  C D SN +  F R R+R
Sbjct: 115 GVRL--VRPLLGITRAETGAYCLAHHLPICIDESNANLTFRRNRIR 158


>gi|242239175|ref|YP_002987356.1| C32 tRNA thiolase [Dickeya dadantii Ech703]
 gi|242131232|gb|ACS85534.1| PP-loop domain protein [Dickeya dadantii Ech703]
          Length = 313

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 20/201 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEV--RYVSDVCS 78
           ++V +SGG DS  +L  L ++   +    I FS I+V+   ++      V   Y+  +  
Sbjct: 42  VMVCLSGGKDSYTMLEILRNL---QQSAPISFSLIAVNLDQKQPGFPGHVLPNYLDSIGI 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     + +V  K  + +T     +R  R  ++   A  + AT I   H  DD L+T
Sbjct: 99  EYKIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGATKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +++        KGM    M D    D    + RP   CR +DI  F   R       P N
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAEARQFPII--PCN 211

Query: 195 ---TDDRFERVRVRRFVRDID 212
              +    +R  ++  +RD D
Sbjct: 212 LCGSQPNLQRQVIKDMLRDWD 232


>gi|268679168|ref|YP_003303599.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617199|gb|ACZ11564.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 250

 Score = 38.1 bits (87), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 26/223 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DS+ L   L  +     F   +F A+++ + + E    E+  +   C    
Sbjct: 28  ILLGLSGGKDSLSLAHILKHMQRVAPF-DFEFKAVTITYGMGE----ELDTLHQHCVEHE 82

Query: 82  IAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I H +V  K         +  +   +     R   +  +A     T +  AH  DD +E+
Sbjct: 83  IDHEIVDTKIFDLAQDKIRENSSFCSFFSRMRRGALYTYALEYGYTKLALAHHLDDAVES 142

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            +M    +++  G  L  M         L + RP +  R   +R    + N+    D + 
Sbjct: 143 FFM----NFSYNGT-LRSMPPIYTAQNGLHVIRPLIHARERQLRDCAKEHNMPTIGDEAC 197

Query: 195 TDDRFE------RVRVRRFVRDIDLH--ALYLKMKK-FQDLRV 228
              RF+      R R +  +  ++     L++ +KK F+ L+V
Sbjct: 198 PAMRFDVKMPVIRTRTKEMLAQMEQENPELFISLKKAFESLQV 240


>gi|242399147|ref|YP_002994571.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
 gi|242265540|gb|ACS90222.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
          Length = 331

 Score = 38.1 bits (87), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 20/137 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DS+ LL  LH +     F  I   AI++D  +     + V        +L 
Sbjct: 60  IAVGVSGGKDSVVLLHILHKLSQKFPFEII---AITIDEGIEGYRPESVEIAKRNAKKLG 116

Query: 82  IAHSVVSWK-----------------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           I H + S+K                   + + G  +     R  LI+  A+ + A  +  
Sbjct: 117 IEHKIYSFKEYIGFSLDETVSIMGSFEKRERVGACSYCGVWRRWLINYAAQDLEADKLAV 176

Query: 125 AHTFDDQLETVYMRSQR 141
            H  DD+++   M   R
Sbjct: 177 GHNLDDEVQMFLMNVMR 193


>gi|284166087|ref|YP_003404366.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284015742|gb|ADB61693.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 319

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   ++ +SGG DS+ L   LH   ++    +I+   +++   +       V    ++  
Sbjct: 53  PQTWVIGLSGGKDSVVLTQILHDTFAEDP--RIELVGLTIHEGIEGYRDKSVDACVELAD 110

Query: 79  RLRIAHSVVSWKNS-----------KPQTGLMAAAREA---RYALISEHAKTINATLIMT 124
            L I H +VS++              P+   MAA       R  L+ ++A+ + A L++T
Sbjct: 111 DLDIRHELVSYEEEFGVRMDDVVEDDPEN--MAACAYCGVFRRDLLEKYAEKLEADLLLT 168

Query: 125 AHTFDDQLETVYMR 138
            H  DD+ +T  M 
Sbjct: 169 GHNLDDEAQTALMN 182


>gi|167044130|gb|ABZ08813.1| putative PP-loop family protein [uncultured marine crenarchaeote
           HF4000_APKG5C13]
          Length = 267

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA+SGG DS        ++++  ++ K+  SAI+V    +  A++E+ Y   + S + 
Sbjct: 18  ILVALSGGVDS--------ALVAYSAYTKLGKSAIAVTADYKTLAQEELEYAKKISSEIG 69

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARY--ALISEH----AKTINATLIMTAHTFDD 130
           I H V+ +     ++ +        Y  + +SEH    AK     +I+     DD
Sbjct: 70  IKHIVIEYNELDNESFVKNDNNRCFYCRSELSEHLLQVAKEFETDMIVDGTNIDD 124


>gi|167040443|ref|YP_001663428.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514]
 gi|256752475|ref|ZP_05493333.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914494|ref|ZP_07131810.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307724270|ref|YP_003904021.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854683|gb|ABY93092.1| PP-loop domain protein [Thermoanaerobacter sp. X514]
 gi|256748677|gb|EEU61723.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889429|gb|EFK84575.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307581331|gb|ADN54730.1| PP-loop domain protein [Thermoanaerobacter sp. X513]
          Length = 235

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 30/204 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC---- 77
           I V VSGG DS+ LL  LH +   ++F   KF  + +   L     D    V + C    
Sbjct: 24  IAVGVSGGKDSVTLLYGLHLL---KNFYPEKFEVMGLMLTLGYDNFDPTP-VENFCREKG 79

Query: 78  -----SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                    I   V  ++  +    L A  R      ++  AK      +  AH +DD +
Sbjct: 80  IPFFIKETDIKKIVFDYRKEENPCSLCANLRR---GALNNFAKEKGCNKVALAHHYDDLI 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDT-----ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +T  M          +  +G   T      L    + + RP +  + +DIRS + + N+ 
Sbjct: 137 DTFIM---------NLFYNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLP 187

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211
             ++P   +   +R  +R  + D+
Sbjct: 188 VVKNPCPVEGHTKRHYIRNLLIDL 211


>gi|312881636|ref|ZP_07741414.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309370699|gb|EFP98173.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 297

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 25/171 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----------DHCLRE--TAKDE 69
           ++  +SGG DS  +L  L   L+ +    IKF  ++V          +H L E   + D 
Sbjct: 40  VMACISGGKDSFAMLDIL---LNLQKAAPIKFDVVAVNLDQKQPGFPEHILPEYFESLDI 96

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             Y+ D     +  +SVV  K  + +T     +R  R  L S  A+ I AT +   H  D
Sbjct: 97  PYYIVD-----KDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHMD 150

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           D +ET+++        K M      D    D    + RP   CR +D+ ++
Sbjct: 151 DMVETLFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDLITY 197


>gi|147679000|ref|YP_001213215.1| ATPase [Pelotomaculum thermopropionicum SI]
 gi|146275097|dbj|BAF60846.1| predicted ATPase [Pelotomaculum thermopropionicum SI]
          Length = 250

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 21/196 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------HCLRETAKDEVRYVS 74
           + V +SGG DS  LL ALH ++S  +  + +  A+ VD         L E  +  +R VS
Sbjct: 29  VAVGMSGGKDSTSLLHALH-LISRSAPVRFELEAVFVDLGWPADISLLEEFCR--LRNVS 85

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT--INATLIMTAHTFDDQL 132
               +  IA  V   +  +    L A  R   +     H K   +    +   H  DD +
Sbjct: 86  LHVVKTGIAEIVFEARKGENPCALCAHLRRGAF-----HGKALELGCNKVALGHHLDDAI 140

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET +M     +    +     C T L    L + RP +    EDIR+++    +    +P
Sbjct: 141 ETFFMSL---FYTGQLRTFSPC-TFLDRTGLTMIRPLVYLPAEDIRTWVEMEGLPAITNP 196

Query: 193 SNTDDRFERVRVRRFV 208
                + +R   R  V
Sbjct: 197 CPASGKTKRQEARELV 212


>gi|293375997|ref|ZP_06622255.1| PP-loop family protein [Turicibacter sanguinis PC909]
 gi|325842257|ref|ZP_08167649.1| PP-loop family protein [Turicibacter sp. HGF1]
 gi|292645374|gb|EFF63426.1| PP-loop family protein [Turicibacter sanguinis PC909]
 gi|325489663|gb|EGC92023.1| PP-loop family protein [Turicibacter sp. HGF1]
          Length = 244

 Score = 38.1 bits (87), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 17/198 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V VSGG DSM LL ALH     + F  +KF  + +   L     D    V + C    
Sbjct: 24  VAVGVSGGKDSMALLYALHLY---QKFAPVKFELVGITLKLGFPGMD-FNPVVEFCKEHG 79

Query: 82  IAHSVVSWKN------SKPQTGLMAAAREARY--ALISEHAKTINATLIMTAHTFDDQLE 133
           I + +V  +       +  + G +  +  +++  A++ +    +    I  AH  DD +E
Sbjct: 80  IEYHLVDTQVYEILQLNADENGKIPCSLCSKFKKAILIKKGVELGCNKISMAHHADDAVE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ M +  +    G   +      L   ++   RP + C  +DI S    R++       
Sbjct: 140 TLVMNTMYN----GYMATFKPKMYLDRTDVTFIRPLVYCYEDDIIS-AANRHVPIVPSTC 194

Query: 194 NTDDRFERVRVRRFVRDI 211
             D   +R  V++ ++ +
Sbjct: 195 PMDKHTKREDVKQLLKKL 212


>gi|332296196|ref|YP_004438119.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796]
 gi|332179299|gb|AEE14988.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 241

 Score = 38.1 bits (87), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 30/198 (15%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR---YVSDVCSRL 80
           V +SGG DS+  L AL+ VL  R   K K  A+ VD      + D+++    ++ +    
Sbjct: 29  VGLSGGKDSLITLWALNEVLRHRK-EKYKLCAVLVDQGFPGFSYDKIKDYLILNGIPYIE 87

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           R ++   S   S+    + +  R  R AL+ + AK + AT +   H  DD LE + M   
Sbjct: 88  RKSYIYSSLSKSESPCAICSHLR--RGALV-DGAKIMGATHLALGHHLDDLLEGIVMT-- 142

Query: 141 RDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCRREDIRSFLLQRNISW-----CE 190
                  + ++G  + +     L   ++++ RP L    E IR  +L + I        E
Sbjct: 143 -------IAMNGRPNVLVPIKYLSRRDIYLIRPLLLVEEEHIR--ILSKKIQGINPVESE 193

Query: 191 DPSNTDDRFERVRVRRFV 208
            P + D   ER++++ ++
Sbjct: 194 CPYSKDS--ERIKIKNWL 209


>gi|260437103|ref|ZP_05790919.1| ExsB family protein [Butyrivibrio crossotus DSM 2876]
 gi|292810415|gb|EFF69620.1| ExsB family protein [Butyrivibrio crossotus DSM 2876]
          Length = 242

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + +SGG DS+ LL AL  +   R F   K+  +++   L     D    V ++C +L 
Sbjct: 26  IAIGISGGKDSLTLLYALAGL---RRFYPKKYELVAITVKLGLENMD-FTPVKELCDKLE 81

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + +  V  +       ++ ++   +   + R    +E A  +       AH  DD +ET 
Sbjct: 82  VPYYTVDTEIYQIIFEARKESNPCSLCAKMRKGAFNEKALELGCNKFAYAHHRDDLIETF 141

Query: 136 YM 137
           YM
Sbjct: 142 YM 143


>gi|307546134|ref|YP_003898613.1| C32 tRNA thiolase [Halomonas elongata DSM 2581]
 gi|307218158|emb|CBV43428.1| C32 tRNA thiolase [Halomonas elongata DSM 2581]
          Length = 298

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L ++  +     + FS ++V+   ++    E     Y+  +  
Sbjct: 58  VMVCLSGGKDSYTMLEILRNLQRN---APVDFSLVAVNLDQKQPGFPEHVLPEYLEGIGV 114

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I     +SVV  K  + +T     +R  R +L   +A+ I AT I   H  +D LET
Sbjct: 115 DYHILERDTYSVVKEKTPEGKTTCSLCSRLRRGSLYG-YAEEIGATKIALGHHREDILET 173

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSF 180
           +++         G  L  M   +L D   N+ I RP   CR  DI  F
Sbjct: 174 LFLN-----MFFGGSLKSMPPKLLSDDGKNIVI-RPLAYCREADIAEF 215


>gi|282853313|ref|ZP_06262650.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J139]
 gi|282582766|gb|EFB88146.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J139]
          Length = 317

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 16/185 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V  SGG DS+ L  AL S  + R   +     + VDH L++ + +      D+ +R  +
Sbjct: 34  VVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQLQQGSDEVAERTRDLLARRGM 90

Query: 83  AHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              V  V      P     AA    R AL+           ++  HT DDQ E V +   
Sbjct: 91  DACVRRVDVDAHDPDGPEAAARTARRAALLD----VAGDEPVLLGHTRDDQAEQVLLSLA 146

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G G + +          W   P L  RR        +  +   +DP N D RF 
Sbjct: 147 R-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQACREWEVEPWQDPHNGDPRFL 199

Query: 201 RVRVR 205
           R RVR
Sbjct: 200 RSRVR 204


>gi|168213914|ref|ZP_02639539.1| ExsB family protein [Clostridium perfringens CPE str. F4969]
 gi|170714588|gb|EDT26770.1| ExsB family protein [Clostridium perfringens CPE str. F4969]
          Length = 244

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 22/200 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--------DHCLRETAKD-EVRY 72
           I V +SGG DS+ LL   H + + + F   KF  I++        +  L E  K+ +V +
Sbjct: 27  IAVGLSGGKDSLTLL---HILKNYQRFSPEKFELIAITLNPGGVDNSPLHELCKNIDVPF 83

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +  I   V   K  K    L A  R  R AL +++A+ +    +   H  DD L
Sbjct: 84  YE---IQTDIKEIVFDIKKEKNPCSLCANLR--RGAL-NDNAEKLGCNKVALGHHKDDAL 137

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +      + +G        + ++  NL + RP +      IR    + N    ++P
Sbjct: 138 ETLML----SISYEGRINCFSPKSFMHKNNLTLIRPMVFIEESQIRKAATEYNFPVIKNP 193

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D + +R  ++  +R +D
Sbjct: 194 CPADGKTKREDMKNLIRSLD 213


>gi|163814067|ref|ZP_02205459.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759]
 gi|158450516|gb|EDP27511.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 18/214 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79
           I + +SGG DS+ LL A+  +   + F  I F   AI+VD         E+R   + C  
Sbjct: 26  IAIGISGGKDSLTLLYAMAKL---KKFYPIPFELEAITVDLGFEGFDTSELR---EYCES 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L + +SV   +      + + ++   +     R    ++ A ++    I  AH  DD ++
Sbjct: 80  LDVRYSVCKTQIGEIIFDYRKESNPCSLCSRMRKGAFNDCAVSLGCNKIAYAHHKDDVID 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           +  M     Y  +    S +  T L    + + RP +     +IR+F     +  C++P 
Sbjct: 140 SFLMSML--YEGRIHTFSPV--THLEKTGVTLIRPLIYVLEGEIRAFARANALPVCKNPC 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             D   +R   +  + ++ +    +K + F  + 
Sbjct: 196 PADGVTKRQESKDIIDELKVRVPDVKDRIFSSIE 229


>gi|167626278|ref|YP_001676778.1| hypothetical protein Fphi_0057 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|205830350|sp|B0TY35|TTCA1_FRAP2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|167596279|gb|ABZ86277.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 256

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 85/198 (42%), Gaps = 16/198 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           +++ +SGG DS GLL  LH ++ D+++  I     ++D         ++R Y+ ++    
Sbjct: 33  VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDNLGVSY 91

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I     + VV  K  + +T     +R  R   I  +AK      I+  H  DD +E++ 
Sbjct: 92  EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIESLL 150

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           M        +G   S     I  D    + RP +  +  D+  F  + N      P N  
Sbjct: 151 MS----ILYQGQIKSMPPKFITQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 204

Query: 195 -TDDRFERVRVRRFVRDI 211
            + +  +R +V++ ++D+
Sbjct: 205 GSQENLKRKKVKKLIQDL 222


>gi|16082141|ref|NP_394578.1| hypothetical protein Ta1119 [Thermoplasma acidophilum DSM 1728]
 gi|10640432|emb|CAC12246.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 314

 Score = 38.1 bits (87), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS   L  LH +LS R    ++ +A +VD  +       +     +   L 
Sbjct: 51  ISVAISGGKDSSVTLYLLHKILSKRR--NVELTAFTVDEGISGYRPAGLESAIKLTKMLG 108

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLIMTAHTFDD 130
           + HS++ +++S   T       +A           R  LI+E A+  NA  +      DD
Sbjct: 109 VDHSIIRFQDSFGMTLDSIVGADASRIPCSYCGPLRRKLINEMAERQNADYVALGLNLDD 168

Query: 131 QLETVYMR-SQRDY 143
             +++ M  ++ DY
Sbjct: 169 YSQSILMNVAKGDY 182


>gi|325179672|emb|CCA14070.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 1185

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 9  VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
          + FF   L    H L+A  GG+D    +I+  S +++    K+ F+A+ VDH  R +AK 
Sbjct: 1  MEFFPTELKKTPHPLIAALGGTDYQAKIISHISAINEDYVPKLHFTALPVDH--RFSAKK 58

Query: 69 EVR 71
          E+R
Sbjct: 59 ELR 61


>gi|269139128|ref|YP_003295829.1| C32 tRNA thiolase [Edwardsiella tarda EIB202]
 gi|267984789|gb|ACY84618.1| C32 tRNA thiolase [Edwardsiella tarda EIB202]
 gi|304559054|gb|ADM41718.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Edwardsiella tarda
           FL6-60]
          Length = 311

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV---RYVSDVCS 78
           ++V +SGG DS  +L  L ++   +    + F+ ++V+   ++    E     Y+     
Sbjct: 42  VMVCLSGGKDSYTMLEILRNL---QQSAPVNFTLVAVNLDQKQPGFPETVLPAYLETQGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             RI     + +V  K  + +T     +R  R  ++   A  +    I   H  DD LET
Sbjct: 99  EYRIVEENTYGIVKEKIPEGKTTCSLCSR-LRRGILYRTANELRCNKIALGHHRDDMLET 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 199


>gi|313897338|ref|ZP_07830881.1| PP-loop family protein [Clostridium sp. HGF2]
 gi|312957708|gb|EFR39333.1| PP-loop family protein [Clostridium sp. HGF2]
          Length = 317

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 22  ILVAVSGGSDSMGLLIALH--SVLSDRSFG------KIKFSAISVDHCL---RETAKDEV 70
           I V VSGG DSM LL ALH  S  +DR+F       K+ F  +     +   R+      
Sbjct: 26  IAVGVSGGKDSMVLLTALHMYSKFADRNFEVVGIHIKLGFPNMDFSEVVAFCRQQGITFY 85

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMTAHTFD 129
           +Y S V   L+        +N   +  +  +   + + A + + AK +N T +   H  D
Sbjct: 86  QYDSQVYEILK--------RNPDKEGNIKCSLCSKFKKATVIDAAKKLNCTKVAFGHHSD 137

Query: 130 DQLETVYMRS 139
           D +ET+ M +
Sbjct: 138 DAVETLLMNA 147


>gi|56750421|ref|YP_171122.1| hypothetical protein syc0412_c [Synechococcus elongatus PCC 6301]
 gi|56685380|dbj|BAD78602.1| hypothetical protein YCF62 [Synechococcus elongatus PCC 6301]
          Length = 283

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 2/106 (1%)

Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
           AAAR  RY ++   A  I+A L++T HT  D+ ET+     R    +G+  S      L 
Sbjct: 59  AAARTWRYQVLEAIAADIDAALLVTGHTASDRAETLLYNLTRGSHLQGLA-SLRWQRSLS 117

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           D  L + RPFL   R +    + Q  +   ED +N D RF R R+R
Sbjct: 118 D-RLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNRDRRFARNRLR 162


>gi|160892659|ref|ZP_02073449.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50]
 gi|156865700|gb|EDO59131.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50]
          Length = 251

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 10/122 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS+ LL AL  +   R F   KF  I++   L     D  + +  +C  L 
Sbjct: 26  IAVGISGGKDSLTLLYALAEL---RRFYPKKFDLIAITVNLGFDNFDTAK-IEQLCKELD 81

Query: 82  IAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + + +V  +      N + +    +   + R   +++    +    I  AH  DD +ET 
Sbjct: 82  VPYYIVDTEIYDIVFNVRKEKNPCSLCAKMRKGALNQKLNDLGCNKIAYAHHKDDFIETF 141

Query: 136 YM 137
            M
Sbjct: 142 LM 143


>gi|314982853|gb|EFT26945.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA3]
 gi|315091171|gb|EFT63147.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA4]
          Length = 311

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 16/185 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V  SGG DS+ L  AL S  + R   +     + VDH L++ + +      D+ +R  +
Sbjct: 28  VVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQLQQGSDEVAERTRDLLARRGM 84

Query: 83  AHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              V  V      P     AA    R AL+           ++  HT DDQ E V +   
Sbjct: 85  DACVRRVDVDAHDPDGPEAAARTARRAALLD----VAGDEPVLLGHTRDDQAEQVLLSLA 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G G + +          W   P L  RR        +  +   +DP N D RF 
Sbjct: 141 R-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQACREWEVEPWQDPHNGDPRFL 193

Query: 201 RVRVR 205
           R RVR
Sbjct: 194 RSRVR 198


>gi|291531576|emb|CBK97161.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium siraeum 70/3]
          Length = 241

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 84/214 (39%), Gaps = 16/214 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDVCSR 79
           I V VSGG DS+ LL  L  +   R F +  +  +A+++D        +    V+ +C +
Sbjct: 24  IAVGVSGGKDSLVLLAGLAQM---RRFAEFDYDITAVTIDPGF-NGVPNNYEAVARLCEK 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L +  S+V  +      + + +    +     R   + + AK      +   H  DD +E
Sbjct: 80  LDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAAGCNKLALGHNNDDVIE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  M     + E  +G      T L   ++ + RP +      + S   +      +   
Sbjct: 140 TFIMNL---FNEGRIGCFSP-KTHLDRKDITVIRPLVLAPESQVLSACNRNGFEIIKSVC 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             D    R + + F+RD++      K++ F  LR
Sbjct: 196 PADKTTTRQKTKEFLRDMEHKDKGFKLRMFTALR 229


>gi|119472171|ref|ZP_01614373.1| hypothetical protein ATW7_08424 [Alteromonadales bacterium TW-7]
 gi|119445090|gb|EAW26384.1| hypothetical protein ATW7_08424 [Alteromonadales bacterium TW-7]
          Length = 303

 Score = 37.7 bits (86), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V +SGG DS  +L  L  +   +    IKF  + V+   ++    E   + +   +L 
Sbjct: 40  IMVCLSGGKDSYTMLEMLQHL---KRVAPIKFDLVVVNLDQKQPGFPE-HVLPEYLDKLD 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +V        T ++   +         R  ++   AK + AT I   H  DD +ET
Sbjct: 96  VEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDMIET 155

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        K M    M D   +     + RP   C+  DI  +
Sbjct: 156 LFLNMFYGGKLKSMPAKLMSDNGEH----MVIRPLAYCKEADISKY 197


>gi|56708253|ref|YP_170149.1| C32 tRNA thiolase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670724|ref|YP_667281.1| hypothetical protein FTF1187 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457372|ref|ZP_03665845.1| hypothetical protein FtultM_06802 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370739|ref|ZP_04986744.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875073|ref|ZP_05247783.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81597358|sp|Q5NFP3|TTCA2_FRATT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|123063441|sp|Q14H45|TTCA2_FRAT1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|56604745|emb|CAG45820.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321057|emb|CAL09203.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568982|gb|EDN34636.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841072|gb|EET19508.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159480|gb|ADA78871.1| hypothetical protein NE061598_06875 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 251

 Score = 37.7 bits (86), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 16/200 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRL 80
           +++ +SGG DS GLL  LH ++ D+++  I     ++D         ++R Y+ D+    
Sbjct: 28  VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSY 86

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I     + V+  K  + +T     +R  R   I  +AK      I+  H  DD ++++ 
Sbjct: 87  EIETKNTYGVIIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           M        +G   S     +  D    + RP +  +  D+  F  + N      P N  
Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199

Query: 195 -TDDRFERVRVRRFVRDIDL 213
            + +  +R +V++ ++D+ L
Sbjct: 200 GSQENLKRKKVKKLIQDLAL 219


>gi|320585793|gb|EFW98472.1| pp-loop family protein [Grosmannia clavigera kw1407]
          Length = 686

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 22/160 (13%)

Query: 12  FVRSLVYPAHI-LVAVSGGSDSMGLLIALHSV--------LSDRSFGKIKFSAISVDHCL 62
           FV S  + AH   +A+SGG DSM L      +        ++D   G   F+A+ VDH L
Sbjct: 5   FVLSSSFVAHSSALAISGGVDSMALAFLCSQLRRVDPWFRIADAPVG--GFTALIVDHRL 62

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAK 115
           R+ +  E + V++    L   H    W  +          + +  AAR  RY  +     
Sbjct: 63  RDGSAVEAQAVAEAVRNL--GHRTQVWALTNFGGSSSSSSSSIETAARHFRYRCLGVRMA 120

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKG--MGLSGM 153
                 ++ AH  DDQ ETV +R    Y   G   GL GM
Sbjct: 121 QSRLVSLLLAHHADDQYETVLLRLLTGYGLHGGIRGLRGM 160


>gi|302872795|ref|YP_003841431.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575654|gb|ADL43445.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 235

 Score = 37.7 bits (86), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 80/198 (40%), Gaps = 18/198 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I V VS G DS+ +L  L  +   R F   KF   AI+VD         +   + + C +
Sbjct: 24  IAVGVSAGKDSLTMLYTLSFM---RRFYPKKFDVVAITVDMGFESM---DFLPIKEFCDK 77

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           + +   +V  +      + + +    +     R  +++  AK++    +   H  DD +E
Sbjct: 78  INVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNSTAKSLGCNKVALGHHLDDVVE 137

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T ++        +G        T L    + + RP +  +  ++RS   +  +    +P 
Sbjct: 138 TFFL----SLFFEGRIYCFSPKTYLDRTQITVIRPMIYVKEHELRSAAKKLELPVITNPC 193

Query: 194 NTDDRFERVRVRRFVRDI 211
             + +  R R++ FV+ +
Sbjct: 194 PANGKTNRQRIKEFVKSL 211


>gi|168215907|ref|ZP_02641532.1| ExsB family protein [Clostridium perfringens NCTC 8239]
 gi|182381767|gb|EDT79246.1| ExsB family protein [Clostridium perfringens NCTC 8239]
          Length = 244

 Score = 37.4 bits (85), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 22/200 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--------DHCLRETAKD-EVRY 72
           I V +SGG DS+ LL   H + + + F   KF  I++        +  L E  K+ +V +
Sbjct: 27  IAVGLSGGKDSLTLL---HILKNYQRFSPEKFELIAITLNPGGVDNSPLHELCKNIDVPF 83

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +  I   V   K  K    L A  R  R AL +++A+ +    +   H  DD L
Sbjct: 84  YE---IQTDIKEIVFDIKKEKNPCSLCANLR--RGAL-NDNAEKLGCNKVALGHHKDDAL 137

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +      + +G        + ++  NL + RP +      IR    + N    ++P
Sbjct: 138 ETLML----SISYEGRINCFSPKSFMHKNNLTLIRPMVFIEESQIRKAAAEYNFPVIKNP 193

Query: 193 SNTDDRFERVRVRRFVRDID 212
              D + +R  ++  +R +D
Sbjct: 194 CPADGKTKREDMKSLIRSLD 213


>gi|149911837|ref|ZP_01900439.1| hypothetical protein PE36_11367 [Moritella sp. PE36]
 gi|149805090|gb|EDM65114.1| hypothetical protein PE36_11367 [Moritella sp. PE36]
          Length = 309

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG+DS  +L  L   L  ++   I F  I+V+   ++    E    RY+ ++  
Sbjct: 41  VMVCLSGGADSYTMLDIL---LQLKAAAPISFDIIAVNLDQKQPGFPEDILPRYLENLGI 97

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   A  + AT +   H  DD +ET
Sbjct: 98  EYKIVQKDTYSIVKDKIPEGKTTCSLCSR-LRRGILYNAAVELRATKLALGHHADDIVET 156

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        K M    + D    D    + RP   CR  DI+++
Sbjct: 157 LFLNMFHGAKMKTMPPKLISD----DKRNIVIRPLAYCREADIKAY 198


>gi|323447395|gb|EGB03318.1| hypothetical protein AURANDRAFT_68117 [Aureococcus anophagefferens]
          Length = 492

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 12/150 (8%)

Query: 54  SAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
           S ++ DH  R E +  +  +V+ +  R  +  +  +W +S   +  M      R      
Sbjct: 118 SVLNFDHRQRGEISSCDTLFVAALARRFGLECTAHNWVHSSTHSSQMEFRAWRRTTSFKT 177

Query: 113 HAKTINATL------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
               ++A +      +  AH  DDQ+E+  +R  R     G  L+ +   +         
Sbjct: 178 AFNVVDALIPQRCGHVALAHHADDQMESFLLRLAR-----GSRLTNVFKGVASQAAPCFV 232

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           RP L   + D+ ++L     SW ED +NTD
Sbjct: 233 RPLLFATKHDLVTYLDADGESWREDTTNTD 262


>gi|309775465|ref|ZP_07670467.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916761|gb|EFP62499.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 317

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 14/196 (7%)

Query: 22  ILVAVSGGSDSMGLLIALH--SVLSDRSFG----KIKFSAISVDHCLRET-AKDEVRYVS 74
           I V VSGG DSM LL ALH  S  +DR+F      IK    ++D    E   K++     
Sbjct: 26  IAVGVSGGKDSMVLLTALHMYSKFADRNFEVVGIHIKLGFPNMDFSKVEAFCKEQGITFH 85

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              S++   + ++     K      +   + + A + + AK ++ T +   H  DD +ET
Sbjct: 86  QFDSKV---YEILKRNPDKEGRIKCSLCSKFKKATVIDAAKKLSCTKVAFGHHSDDAVET 142

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + M +       G   + +    +   +    RP +     +I S L + NI + +    
Sbjct: 143 LLMNA----IHGGKLATFLPKMYMSRTDTTFIRPLVYSYESEILSALTRNNIPFVKSTCP 198

Query: 195 TDDRFERVRVRRFVRD 210
            D   ER  ++  ++D
Sbjct: 199 NDGYTERQAMKDMLQD 214


>gi|315126297|ref|YP_004068300.1| hypothetical protein PSM_A1209 [Pseudoalteromonas sp. SM9913]
 gi|315014811|gb|ADT68149.1| hypothetical protein PSM_A1209 [Pseudoalteromonas sp. SM9913]
          Length = 304

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V +SGG DS  +L  L  +   +    IKF   +V+   ++    E   + +    L 
Sbjct: 40  IMVCLSGGKDSYTMLDMLQHL---QRVAPIKFDLFAVNLDQKQPGFPE-HVLPEYLDNLN 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134
           I + +V        T ++   +         R  ++   AK + AT I   H  DD +ET
Sbjct: 96  IEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDMIET 155

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        K M    M D   +     + RP   C+  DI  +
Sbjct: 156 LFLNMFYGGKLKSMPAKLMSDNGEH----MVIRPLAYCKEADISKY 197


>gi|222530555|ref|YP_002574437.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457402|gb|ACM61664.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 235

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 18/198 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I V VS G DS+ +L  L  +   R F   KF   AI+VD         +   + + C +
Sbjct: 24  IAVGVSAGKDSLTMLYTLSFL---RKFYPKKFEVVAITVDMGFEGM---DFLPIKEFCDK 77

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           + +   +V  +      + + +    +     R  +++  AK++    +   H  DD +E
Sbjct: 78  IDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNSTAKSLGCNKVALGHHLDDVVE 137

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T ++        +G        T L    +   RP +  +  D+RS   +  +    +P 
Sbjct: 138 TFFL----SLFFEGRIYCFSPKTYLDRTQITTIRPMIYLKEHDLRSAAKKLELPVITNPC 193

Query: 194 NTDDRFERVRVRRFVRDI 211
             + +  R R++ FV+++
Sbjct: 194 PANGKTNRQRMKEFVKNL 211


>gi|149191306|ref|ZP_01869560.1| putative ATPase [Vibrio shilonii AK1]
 gi|148834842|gb|EDL51825.1| putative ATPase [Vibrio shilonii AK1]
          Length = 297

 Score = 37.4 bits (85), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++  +SGG DS  +L  L   L+ +    IKF  ++V+   ++    E   + D    L 
Sbjct: 40  VMACISGGKDSFAMLDIL---LNLQKAAPIKFDVVAVNLDQKQPGFPE-HILPDYFETLN 95

Query: 82  I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           I         +SVV  K  + +T     +R  R  L S  A+ I AT I   H  DD +E
Sbjct: 96  IPYYIVDKDTYSVVKEKIPEGKTTCGLCSRLRRGTLYS-FAEKIGATKIALGHHLDDIVE 154

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T+++        K M      D    D    + RP   CR +D+
Sbjct: 155 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 194


>gi|328908035|gb|EGG27794.1| cell cycle protein MesJ [Propionibacterium sp. P08]
          Length = 230

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R     G G + +          W   P L  RR       
Sbjct: 35  VLLGHTLDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEIRRAQTVQAC 87

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
            +  +   +DP N D RF R RVR
Sbjct: 88  REWEVEPWQDPHNGDPRFLRSRVR 111


>gi|325187233|emb|CCA21772.1| tRNA(Ile)lysidine synthase putative [Albugo laibachii Nc14]
          Length = 660

 Score = 37.4 bits (85), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 10  RFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAK 67
           RF V ++ +    + V++SGG DSM L   LH V LS   +G +   AI +D+  R  + 
Sbjct: 211 RFLVNKNALSDTPVAVSLSGGVDSMVLAYLLHKVRLSSHYYGIV---AIHIDYGNRPESA 267

Query: 68  DEVRYVSDVCSRLRI 82
            E  YV   C RL I
Sbjct: 268 AECSYVKYWCDRLDI 282


>gi|257053471|ref|YP_003131304.1| PP-loop domain protein [Halorhabdus utahensis DSM 12940]
 gi|256692234|gb|ACV12571.1| PP-loop domain protein [Halorhabdus utahensis DSM 12940]
          Length = 321

 Score = 37.4 bits (85), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 18/133 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   L+ +SGG DS+ L   L    ++    +I+  A+S+   +     + +     +  
Sbjct: 55  PVTWLIGLSGGKDSVVLTQLLAETFAEDP--RIELVALSIHEGIEGYRDESLDAAEALTD 112

Query: 79  RLRIAHSVVSWKNS-----------KPQTGLMAAAREA---RYALISEHAKTINATLIMT 124
            L + H  VS+  +            P+   MAA       R  L+S +A   +A L++T
Sbjct: 113 DLDLRHETVSYAEAFGVRMDDVVEDDPEN--MAACAYCGVFRRDLLSRYADEYDADLLLT 170

Query: 125 AHTFDDQLETVYM 137
            H  DD+ ET  M
Sbjct: 171 GHNLDDEAETALM 183


>gi|146304686|ref|YP_001192002.1| PP-loop domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145702936|gb|ABP96078.1| PP-loop domain protein [Metallosphaera sedula DSM 5348]
          Length = 315

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS--VDHCLRETAKDEVRYVSDVC 77
           + +L+AVSGG DS+ L   L  V+       I F+ +     +   +  K+   Y+ D+ 
Sbjct: 48  SRVLIAVSGGKDSLVLADTLSKVMDPSKL--IAFNIVEGIQGYNREDQVKELYHYLRDLG 105

Query: 78  SRL-------RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTINATLIMTAH 126
             L        + +S+    +S    GL  AA       R  LI++  + + A L+ T H
Sbjct: 106 IELISTSFKTSVGYSLDEMVSSSRARGLNIAACTFCGGFRRKLINQAGRDVKADLVATGH 165

Query: 127 TFDDQLETV 135
             DD+ +T+
Sbjct: 166 NLDDEAQTI 174


>gi|289580657|ref|YP_003479123.1| PP-loop domain protein [Natrialba magadii ATCC 43099]
 gi|289530210|gb|ADD04561.1| PP-loop domain protein [Natrialba magadii ATCC 43099]
          Length = 319

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 24/137 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEVRYVSD 75
           P   ++ +SGG DS+ L   LH   +     +I+   +++   +   R+ + D    +SD
Sbjct: 53  PQTWVIGLSGGKDSVVLTQILHETFAKDP--RIELVGLTIHEGIEGYRDKSLDACVELSD 110

Query: 76  VCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREA---RYALISEHAKTINATL 121
               L I H VVS+++             P+   MAA       R  ++S +A  + A L
Sbjct: 111 ---DLDIRHEVVSYEDEFGIQMDDVVEDDPEN--MAACAYCGVFRRDILSRYADDLGADL 165

Query: 122 IMTAHTFDDQLETVYMR 138
           ++T H  DD+ +T  M 
Sbjct: 166 LLTGHNLDDEAQTALMN 182


>gi|237749968|ref|ZP_04580448.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229374379|gb|EEO24770.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 295

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 31/237 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DSM LL  + + +   +  K +F A+++D+        E  Y+ + C +L 
Sbjct: 70  ILLGLSGGKDSM-LLATIFAYMKKHAPFKFEFLAMTIDY----GRGGEYEYIFEYCKKLN 124

Query: 82  IAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I + +       +   + K  T   +     R   +   A       I  AH  DD  E+
Sbjct: 125 IPYELNRTQIFKILENHKKEGTIYCSFCSRMRRGELYSMALERGFNKIALAHHLDDAAES 184

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW---CED 191
             M    + A     L  M         L + RP +  R   I  F+   NI     C  
Sbjct: 185 FMMNLTYNGA-----LRSMPPYYKAQNGLGVIRPLIFVRERQIIDFIASNNIYIAPDCNC 239

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N     +R + R   +++            +DL  K  N    L   +  +H +S
Sbjct: 240 PINWLPEDKRPKARAANKEL-----------LKDLESKNPNLFKSLKNAFSNIHAQS 285


>gi|222478949|ref|YP_002565186.1| PP-loop domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451851|gb|ACM56116.1| PP-loop domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 326

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 24/132 (18%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++ +SGG DS    +AL  +L D  FGK   ++  A+++   +     + +    ++   
Sbjct: 57  VIGLSGGKDS----VALTQILDD-VFGKDPRVEMLALTIHEGIEGYRDESIDATIELTED 111

Query: 80  LRIAHSVVSWKN-----------SKPQTGLMAAAREA---RYALISEHAKTINATLIMTA 125
           L I H VVS++            S P+   MAA       R  L+ ++A   +A  ++T 
Sbjct: 112 LSIRHEVVSYEEEFDVQMDDVVESDPEN--MAACAYCGVFRRDLLEKYAAEFDADKLLTG 169

Query: 126 HTFDDQLETVYM 137
           H  DD+ +T  M
Sbjct: 170 HNLDDEAQTAMM 181


>gi|313127354|ref|YP_004037624.1| hypothetical protein Hbor_26270 [Halogeometricum borinquense DSM
           11551]
 gi|312293719|gb|ADQ68179.1| conserved hypothetical protein TIGR00269 [Halogeometricum
           borinquense DSM 11551]
          Length = 322

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 22/135 (16%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAISVDHCLRETAKDEVRYVSD 75
           P   ++ +SGG DS+ L   L     D +FGK   I+  A+++   +     + V    +
Sbjct: 53  PERWVIGLSGGKDSVVLTHIL-----DETFGKDPRIEMMALTIHEGIEGYRDESVEACVE 107

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RYALISEHAKTINATLI 122
           +   L++ H +V+++  +    +   ARE              R  L+  +A+  +A  +
Sbjct: 108 LSDDLQMRHELVTYE-EEFGVQMDDVAREDPENMAPCAYCGVFRRDLLESYAEEFSADKL 166

Query: 123 MTAHTFDDQLETVYM 137
           +T H  DD+ ET  M
Sbjct: 167 LTGHNLDDEAETALM 181


>gi|254369146|ref|ZP_04985158.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122096|gb|EDO66236.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 251

 Score = 37.0 bits (84), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 16/200 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           +++ +SGG DS GLL  LH ++ D+++  I     ++D         ++ +Y+ D+    
Sbjct: 28  VMLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLKKYLDDLGVSY 86

Query: 81  RI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I     + VV  K  + +T     +R  R   I  +AK      I+  H  DD ++++ 
Sbjct: 87  EIETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-- 194
           M        +G   S     +  D    + RP +  +  D+  F  + N      P N  
Sbjct: 146 MS----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLC 199

Query: 195 -TDDRFERVRVRRFVRDIDL 213
            + +  +R +V++ ++D+ L
Sbjct: 200 GSQENLKRKKVKKLIQDLAL 219


>gi|289424614|ref|ZP_06426397.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK187]
 gi|289428939|ref|ZP_06430619.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J165]
 gi|295129827|ref|YP_003580490.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK137]
 gi|289155311|gb|EFD03993.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK187]
 gi|289157940|gb|EFD06163.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J165]
 gi|291376956|gb|ADE00811.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK137]
          Length = 317

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 70/185 (37%), Gaps = 16/185 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V  SGG DS+ L  AL S  + R   +     + VDH L++ + +      D+  R  +
Sbjct: 34  VVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQLQQGSDEVAERTRDLLVRRGM 90

Query: 83  AHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              V  V      P     AA    R AL+           ++  HT DDQ E V +   
Sbjct: 91  DACVRRVDVDADDPDGPEAAARTARRAALLD----VAGDEPVLLGHTRDDQAEQVLLSLA 146

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G G + +          W   P L  RR        +  +   +DP N D RF 
Sbjct: 147 R-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQACREWEVEPWQDPHNGDPRFL 199

Query: 201 RVRVR 205
           R RVR
Sbjct: 200 RSRVR 204


>gi|78777588|ref|YP_393903.1| hypothetical protein Suden_1391 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498128|gb|ABB44668.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 260

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 17/186 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV +SGG DS+ L+ AL        F K +F A+++ + + E  +     +   C   +
Sbjct: 37  ILVGLSGGKDSLTLIHALKEQQRRAPF-KFEFIAVTISYGMGENYEK----LKAHCKEHK 91

Query: 82  IAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           I + V       ++    +  +   +     R   +   A+      +   H  DD  E+
Sbjct: 92  IDYEVYDTNIYDIAEDKIRKNSSFCSFFSRMRRGSLYSAAQKYGCNKVALGHHMDDAAES 151

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            +M    ++   G  L  +      D  + + RP +  R   + +F+ + NI    D + 
Sbjct: 152 FFM----NFIYNGQ-LRSLAPKYKADRGVIVIRPLIEMRERQLEAFVRENNIETIGDEAC 206

Query: 195 TDDRFE 200
              RF+
Sbjct: 207 PSMRFD 212


>gi|89256143|ref|YP_513505.1| C32 tRNA thiolase [Francisella tularensis subsp. holarctica LVS]
 gi|115314615|ref|YP_763338.1| PP-loop superfamily ATPase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502170|ref|YP_001428235.1| ATPase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167010589|ref|ZP_02275520.1| hypothetical protein Ftulh_07739 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367466|ref|ZP_04983492.1| hypothetical protein FTHG_00711 [Francisella tularensis subsp.
           holarctica 257]
 gi|290953286|ref|ZP_06557907.1| ATPase [Francisella tularensis subsp. holarctica URFT1]
 gi|295313492|ref|ZP_06804088.1| ATPase [Francisella tularensis subsp. holarctica URFT1]
 gi|122325361|sp|Q0BMI3|TTCA1_FRATO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|122500903|sp|Q2A447|TTCA1_FRATH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|205830351|sp|A7NBC6|TTCA1_FRATF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|89143974|emb|CAJ79199.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129514|gb|ABI82701.1| possible PP-loop superfamily ATPase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253282|gb|EBA52376.1| hypothetical protein FTHG_00711 [Francisella tularensis subsp.
           holarctica 257]
 gi|156252773|gb|ABU61279.1| putative ATPase, PP-loop family [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 251

 Score = 37.0 bits (84), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 16/199 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRLR 81
           ++ +SGG DS GLL  LH ++ D+++  I     ++D         ++R Y+ D+     
Sbjct: 29  MLCLSGGKDSFGLLKVLHGLIEDKTYD-IDLHVYTLDQSQPGWDDSQLRKYLDDLGVSYE 87

Query: 82  I----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I     + VV  K  + +T     +R  R   I  +AK      I+  H  DD ++++ M
Sbjct: 88  IETKNTYGVVIDKVPEGKTYCSLCSR-LRRGNIYRYAKEHKMDKIILGHHRDDLIQSLLM 146

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN--- 194
                   +G   S     +  D    + RP +  +  D+  F  + N      P N   
Sbjct: 147 S----ILYQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENFPII--PCNLCG 200

Query: 195 TDDRFERVRVRRFVRDIDL 213
           + +  +R +V++ ++D+ L
Sbjct: 201 SQENLKRKKVKKLIQDLAL 219


>gi|148726265|emb|CAL07962.2| hypothetical protein [Ruminococcus flavefaciens]
          Length = 248

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 20/201 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ILV VSGG DS+ LL  L  V+  R  G   K  A+++D        D    +++ C+ L
Sbjct: 24  ILVGVSGGKDSLVLLDGL--VMLQRFIGIDYKVIAVTLDMGFTNGTMD-FSPITEHCNAL 80

Query: 81  ---------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                    +IA  V   +N      L A     R   + + A  +    +   H +DD 
Sbjct: 81  GVEYHIIPTQIAEIVFDVRNEPSPCSLCA---RMRRGALHDAANDLGCNKVALGHNYDDT 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET  M     + E  +G      T L    + + RP +    +++R    +  +     
Sbjct: 138 VETFIMNL---FTEGRIGCYSP-STYLTHKKVTVIRPLVLAPEKEVRRAARRNALPVVTS 193

Query: 192 PSNTDDRFERVRVRRFVRDID 212
               D    R + + F+ D++
Sbjct: 194 VCPADGHTNRQKTKEFIADME 214


>gi|169350219|ref|ZP_02867157.1| hypothetical protein CLOSPI_00963 [Clostridium spiroforme DSM 1552]
 gi|169293002|gb|EDS75135.1| hypothetical protein CLOSPI_00963 [Clostridium spiroforme DSM 1552]
          Length = 252

 Score = 37.0 bits (84), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 78/198 (39%), Gaps = 16/198 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC--SR 79
           I V VSGG DS+ LL  L      + F  +KF  + V H        +   V   C  + 
Sbjct: 32  ICVGVSGGKDSVLLLYCLSLY---KKFADVKFDVVGV-HVEMGFPNMDFSEVDAFCRKNE 87

Query: 80  LRIAHSVVS----WKNSKPQTGLMAAAREARY--ALISEHAKTINATLIMTAHTFDDQLE 133
           + + H         K +K   G +  +  +++  AL+ + AK      +  AH  DD +E
Sbjct: 88  IELYHEPSDVYEILKLNKTDDGRLQCSLCSKFKKALVIDGAKKYGCNKVAFAHHGDDAVE 147

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T++M     Y  K    +        D+N    RP +     DI + + + NI   E   
Sbjct: 148 TLFMNMV--YGGKIATFTPKMYLSRTDMNFI--RPLVYAYESDIVAAVKEANIPIVESTC 203

Query: 194 NTDDRFERVRVRRFVRDI 211
             D   +R   ++ + D+
Sbjct: 204 PADKHTKREEFKQLLNDL 221


>gi|317048255|ref|YP_004115903.1| PP-loop domain-containing protein [Pantoea sp. At-9b]
 gi|316949872|gb|ADU69347.1| PP-loop domain protein [Pantoea sp. At-9b]
          Length = 311

 Score = 37.0 bits (84), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDVCS 78
           I+V +SGG DS  LL  L ++   +    + FS ++V+   ++    A     Y+  +  
Sbjct: 42  IMVCLSGGKDSYTLLEILRNL---QQSAPVNFSLVAVNLDQKQPGFPAHVLPAYLDKLGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +I     +S+V  K  + +T     +R  R  ++   A  +  T I   H  DD L+T
Sbjct: 99  EYKIVNEDTYSIVKEKIPEGKTTCSLCSR-LRRGILYRTATELGCTKIALGHHRDDILQT 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 158 LFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRF 199


>gi|315082137|gb|EFT54113.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL078PA1]
          Length = 311

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 19/205 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L  AL S  + R   +     + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           ++ + +      D+  R  +   V  V      P     AA    R AL+          
Sbjct: 65  QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLD----VAGDE 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++  HT DDQ E V +   R     G G + +          W   P L  RR      
Sbjct: 121 PVLLGHTRDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQA 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
             +  +   +DP N D RF R RVR
Sbjct: 174 CREWEVEPWQDPHNGDPRFLRSRVR 198


>gi|294102346|ref|YP_003554204.1| PP-loop domain protein [Aminobacterium colombiense DSM 12261]
 gi|293617326|gb|ADE57480.1| PP-loop domain protein [Aminobacterium colombiense DSM 12261]
          Length = 259

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 13/195 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV +SGG DS+  L+A  +    +S  + +  A +VD    E A    R +S+ C  L 
Sbjct: 37  ILVGLSGGKDSL-FLLAALAAFRKKSPRRFELGACTVDITGGEMA---TRPLSEFCRSLN 92

Query: 82  IAHSVVSWKNSK-----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           + H V  +  SK      +    +     R  +IS  A      ++   H  DD  ETV 
Sbjct: 93  LEHYVTIYPISKIIKKREEKSPCSFCANIRRGIISSEAVERGYNVLALGHNLDDVAETVL 152

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M    +  + G   S           LW+ RP +    +DI     + ++   ED     
Sbjct: 153 M----NLFQTGRFKSFKPKFWQSRTGLWVIRPLIYIGEKDIMKEAQRLHLPVTEDKCPFS 208

Query: 197 DRFERVRVRRFVRDI 211
              +R R R  + ++
Sbjct: 209 LHTQRSRTRMLIENL 223


>gi|257438080|ref|ZP_05613835.1| ExsB family protein [Faecalibacterium prausnitzii A2-165]
 gi|257199411|gb|EEU97695.1| ExsB family protein [Faecalibacterium prausnitzii A2-165]
          Length = 266

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 22/200 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-------VRY-V 73
           I+V VSGG DS+ L I L  +     F   +  A+++D      A D         RY V
Sbjct: 30  IMVGVSGGKDSVALTIGLAQLRRYLGF-DYEVVAVTLDPQFDHQAVDYSPLAALFARYGV 88

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                R  I   V  ++  K    L A  R  R AL +  A+ +    +   H  DD +E
Sbjct: 89  PYEVRRTEIGPIVFEYRQEKNPCSLCARLR--RGALHTA-AQELGCNKVALGHHLDDAVE 145

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISWCE 190
           T YM   R+      G  G C + +  L+   L + RP L     ++R  + + +    +
Sbjct: 146 TFYMNLWRE------GRIG-CFSPVTQLDRRGLTLIRPMLLATEHEVRCAVKEEDFPIVK 198

Query: 191 DPSNTDDRFERVRVRRFVRD 210
                D    R + + FVR+
Sbjct: 199 SRCPADGVTVREQTKDFVRE 218


>gi|50841748|ref|YP_054975.1| hypothetical protein PPA0258 [Propionibacterium acnes KPA171202]
 gi|61216489|sp|Q6AB49|TILS_PROAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50839350|gb|AAT82017.1| conserved protein [Propionibacterium acnes KPA171202]
 gi|313765283|gb|EFS36647.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL013PA1]
 gi|313793177|gb|EFS41244.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA1]
 gi|313802735|gb|EFS43953.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA2]
 gi|313806392|gb|EFS44899.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA2]
 gi|313810942|gb|EFS48656.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL083PA1]
 gi|313814560|gb|EFS52274.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL025PA1]
 gi|313815348|gb|EFS53062.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL059PA1]
 gi|313817471|gb|EFS55185.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL046PA2]
 gi|313821993|gb|EFS59707.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA1]
 gi|313824111|gb|EFS61825.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA2]
 gi|313826478|gb|EFS64192.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL063PA1]
 gi|313828787|gb|EFS66501.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL063PA2]
 gi|313831707|gb|EFS69421.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL007PA1]
 gi|313834411|gb|EFS72125.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL056PA1]
 gi|313840398|gb|EFS78112.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL086PA1]
 gi|314916064|gb|EFS79895.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA4]
 gi|314917215|gb|EFS81046.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA1]
 gi|314921715|gb|EFS85546.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA3]
 gi|314926568|gb|EFS90399.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA3]
 gi|314931078|gb|EFS94909.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL067PA1]
 gi|314955053|gb|EFS99459.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL027PA1]
 gi|314959092|gb|EFT03194.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA1]
 gi|314961366|gb|EFT05467.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA2]
 gi|314964589|gb|EFT08689.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL082PA1]
 gi|314969688|gb|EFT13786.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA1]
 gi|314974753|gb|EFT18848.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL053PA1]
 gi|314977049|gb|EFT21144.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL045PA1]
 gi|314980291|gb|EFT24385.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL072PA2]
 gi|314985465|gb|EFT29557.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA1]
 gi|314987375|gb|EFT31466.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA2]
 gi|314989084|gb|EFT33175.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA3]
 gi|315078394|gb|EFT50425.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL053PA2]
 gi|315082718|gb|EFT54694.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL027PA2]
 gi|315086077|gb|EFT58053.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA3]
 gi|315087663|gb|EFT59639.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL072PA1]
 gi|315097300|gb|EFT69276.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL038PA1]
 gi|315099488|gb|EFT71464.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL059PA2]
 gi|315102006|gb|EFT73982.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL046PA1]
 gi|315106294|gb|EFT78270.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL030PA1]
 gi|315110072|gb|EFT82048.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL030PA2]
 gi|327331330|gb|EGE73069.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL096PA2]
 gi|327333316|gb|EGE75036.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL096PA3]
 gi|327334836|gb|EGE76547.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL097PA1]
 gi|327445206|gb|EGE91860.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL013PA2]
 gi|327447289|gb|EGE93943.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL043PA1]
 gi|327450264|gb|EGE96918.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL043PA2]
 gi|327454530|gb|EGF01185.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA3]
 gi|327456600|gb|EGF03255.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL083PA2]
 gi|327457124|gb|EGF03779.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL092PA1]
 gi|328755584|gb|EGF69200.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA1]
 gi|328756910|gb|EGF70526.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL025PA2]
 gi|328758406|gb|EGF72022.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL020PA1]
 gi|328761143|gb|EGF74687.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL099PA1]
 gi|332674666|gb|AEE71482.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes 266]
          Length = 311

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 19/205 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L  AL S  + R   +     + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLAL--ALASKWASRRC-ESGVRVVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           ++ + +      D+  R  +   V  V      P     AA    R AL+          
Sbjct: 65  QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLD----VAGDE 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++  HT DDQ E V +   R     G G + +          W   P L  RR      
Sbjct: 121 PVLLGHTRDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEVRRAQTVQA 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR 205
             +  +   +DP N D RF R RVR
Sbjct: 174 CREWEVEPWQDPHNGDPRFLRSRVR 198


>gi|313835713|gb|EFS73427.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA2]
 gi|314928385|gb|EFS92216.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL044PA1]
 gi|314970191|gb|EFT14289.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA3]
          Length = 317

 Score = 36.6 bits (83), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R     G G + +          W   P L  RR       
Sbjct: 122 VLLGHTLDDQAEQVLLSLAR-----GSGATSLAGIRPRSGQFW--HPLLEIRRAQTVQAC 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVR 205
            +  +   +DP N D RF R RVR
Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVR 198


>gi|77360792|ref|YP_340367.1| hypothetical protein PSHAa1852 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123588359|sp|Q3IHG8|TTCA_PSEHT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|76875703|emb|CAI86924.1| conserved protein of unknown function, contains adenine nucleotide
           alpha hydrolase domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 304

 Score = 36.6 bits (83), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V +SGG DS  +L  L  +   +    IKF    V+   ++    E   +     +L 
Sbjct: 40  IMVCLSGGKDSYTMLDMLQHL---KRVAPIKFELFVVNLDQKQPGFPE-HVLPQYLDKLN 95

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +V        T ++   +         R  ++   AK + AT I   H  DD +ET
Sbjct: 96  VEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDMIET 155

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        K M    M D   +     + RP   C+  DI  +
Sbjct: 156 LFLNMFYGGKLKSMPAKLMSDNGEH----MVIRPLAYCKESDISQY 197


>gi|254509242|ref|ZP_05121337.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus 16]
 gi|219547833|gb|EED24863.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus 16]
          Length = 265

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++  +SGG DS  +L  L   L+ +    IKF  ++V+   ++    E   + D    L 
Sbjct: 8   VMACISGGKDSFAMLDIL---LNLQKAAPIKFDVVAVNLDQKQPGFPE-HILPDYFETLN 63

Query: 82  I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           I         +SVV  K  + +T     +R  R  L S  A+ I AT +   H  DD +E
Sbjct: 64  IPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHMDDIVE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T+++        K M      D    D    + RP   CR +D+
Sbjct: 123 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 162


>gi|87119920|ref|ZP_01075816.1| hypothetical protein MED121_01730 [Marinomonas sp. MED121]
 gi|86164622|gb|EAQ65891.1| hypothetical protein MED121_01730 [Marinomonas sp. MED121]
          Length = 280

 Score = 36.6 bits (83), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           ++V +SGG DS  +L  L ++   ++   I FS ++V+   ++    E     Y+S +  
Sbjct: 42  VMVCLSGGKDSYTMLEILRNL---QASAPIDFSIVAVNLDQKQPGFPEHILPEYLSSIGV 98

Query: 79  RLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I     +S+V     + +T     +R  R +L    A  I AT I   H  DD LET
Sbjct: 99  DYHILERDTYSIVKELVPEGKTTCGLCSRLRRGSLYG-FADEIGATKIALGHHRDDILET 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++        K M    + D    D    + RP   C+ +DI +F
Sbjct: 158 LFLNMFFGGKIKSMPPKLLSD----DGRHMVIRPLAYCKEKDIEAF 199


>gi|217969129|ref|YP_002354363.1| C32 tRNA thiolase [Thauera sp. MZ1T]
 gi|217506456|gb|ACK53467.1| PP-loop domain protein [Thauera sp. MZ1T]
          Length = 317

 Score = 36.6 bits (83), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 13/165 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79
           ++V VSGG DS  LL  L + L +R+    +  A+++D   +    D V   Y   +   
Sbjct: 53  VMVCVSGGKDSYTLLSCLLA-LRERAPVDFRIVAMNLDQ-KQPGFPDHVLPAYFESIGVE 110

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            RI     +S+V  K  + +T     +R  R  +I   A  I AT I   H  DD LET+
Sbjct: 111 YRIVTEDTYSIVKDKIPEGKTTCSLCSR-LRRGIIYRTATEIGATRIALGHHRDDMLETL 169

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           ++        K M    + D    D    + RP   C   DI  F
Sbjct: 170 FLNMFFGGKIKAMPPKLVSD----DGKHVVIRPLAYCTEADIARF 210


>gi|325973331|ref|YP_004250395.1| GMP synthase [Mycoplasma suis str. Illinois]
 gi|325989766|ref|YP_004249465.1| GMP synthase (glutamine-hydrolyzing) [Mycoplasma suis KI3806]
 gi|323574851|emb|CBZ40511.1| GMP synthase (Glutamine-hydrolyzing) [Mycoplasma suis]
 gi|323651933|gb|ADX98015.1| GMP synthase [Mycoplasma suis str. Illinois]
          Length = 538

 Score = 36.6 bits (83), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S IE++R   +  +  A ILVA+SGG DS  L+  L  +  DR+   +    IS     +
Sbjct: 222 SKIEALREKYKEQLKDARILVALSGGLDSSVLIHFLAEMTIDRNIYPV---YISTGLVPK 278

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           E  +  ++Y ++  S  R    VVSW++S
Sbjct: 279 EKEEKVIKYFANKFSNFR----VVSWEDS 303


>gi|163800908|ref|ZP_02194808.1| putative ATPase [Vibrio sp. AND4]
 gi|159175257|gb|EDP60054.1| putative ATPase [Vibrio sp. AND4]
          Length = 297

 Score = 36.6 bits (83), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++  +SGG DS  +L  L   L+ +    IKF  ++V+   ++    E   + D    L 
Sbjct: 40  VMACISGGKDSFAMLDIL---LNLQKAAPIKFEVVAVNLDQKQPGFPE-HILPDYFETLN 95

Query: 82  I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           I         +SVV  K  + +T     +R  R  L S  A+ I AT +   H  DD +E
Sbjct: 96  IPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHMDDIVE 154

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T+++        K M      D    D    + RP   CR +D+
Sbjct: 155 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 194


>gi|312136135|ref|YP_004003473.1| PP-loop domain-containing protein [Caldicellulosiruptor owensensis
           OL]
 gi|311776186|gb|ADQ05673.1| PP-loop domain protein [Caldicellulosiruptor owensensis OL]
          Length = 235

 Score = 36.2 bits (82), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 80/198 (40%), Gaps = 18/198 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRYVSDVCSR 79
           I V VS G DS+ +L  L  +   R F   KF   AI+VD         +   + + C +
Sbjct: 24  IAVGVSAGKDSLTMLYTLSFM---RRFYPKKFDVVAITVDMGFEGM---DFLPIKEFCDK 77

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           + +   +V  +      + + +    +     R  +++  AK++    +   H  DD +E
Sbjct: 78  IDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNSTAKSLGCNKVALGHHLDDVVE 137

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T ++        +G        T L    + + RP +  +  D+RS   +  +    +P 
Sbjct: 138 TFFL----SLFYEGRIYCFSPKTYLDRTQVTVIRPMIYVKEHDLRSAAKKLELPVITNPC 193

Query: 194 NTDDRFERVRVRRFVRDI 211
             + +  R +++ FV+ +
Sbjct: 194 PANGKTNRQKMKEFVKSL 211


>gi|261252977|ref|ZP_05945550.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio orientalis CIP
           102891]
 gi|260936368|gb|EEX92357.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio orientalis CIP
           102891]
          Length = 297

 Score = 36.2 bits (82), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++  +SGG DS  +L  L   L+ +    IKF  ++V+   ++    E   + D    L 
Sbjct: 40  VMACISGGKDSFAMLDIL---LNLQKAAPIKFEVVAVNLDQKQPGFPE-HILPDYFETLN 95

Query: 82  I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           I         +SVV  K  + +T     +R  R  L S  A+ I AT +   H  DD +E
Sbjct: 96  IPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHLDDIVE 154

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T+++        K M      D    D    + RP   CR +D+
Sbjct: 155 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 194


>gi|323499029|ref|ZP_08104009.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio sinaloensis
           DSM 21326]
 gi|323315864|gb|EGA68895.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio sinaloensis
           DSM 21326]
          Length = 297

 Score = 36.2 bits (82), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 17/164 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++  +SGG DS  +L  L   L+ +    IKF  ++V+   ++    E   + D    L 
Sbjct: 40  VMACISGGKDSFAMLDIL---LNLQKAAPIKFEVVAVNLDQKQPGFPE-HILPDYFETLN 95

Query: 82  I--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           I         +SVV  K  + +T     +R  R  L S  A+ I AT +   H  DD +E
Sbjct: 96  IPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYS-FAEKIGATKLALGHHLDDIVE 154

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T+++        K M      D    D    + RP   CR +D+
Sbjct: 155 TMFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLTYCREKDL 194


>gi|330445966|ref|ZP_08309618.1| PP-loop family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490157|dbj|GAA04115.1| PP-loop family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 297

 Score = 36.2 bits (82), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 25/168 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----------DHCLRE--TAKDE 69
           ++  +SGG DS  +L  L   L+ +    IKF  ++V          +H L E   + + 
Sbjct: 40  VMACISGGKDSFAMLDIL---LNLQKAAPIKFDVVAVNLDQKQPGFPEHILPEYFASLNI 96

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             Y+ D     +  +SVV  K  + +T     +R  R  L S  A+ I AT I   H  D
Sbjct: 97  PYYIVD-----KDTYSVVKEKIEEGKTTCGLCSRLRRGTLYS-FAEKIGATKIALGHHLD 150

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           D +ET+++        K M      D    D    + RP   CR +D+
Sbjct: 151 DIVETLFLNMFHGSRLKAMPPKLRSD----DGRNVVIRPLAYCREKDL 194


Searching..................................................done


Results from round 2




>gi|254780546|ref|YP_003064959.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040223|gb|ACT57019.1| hypothetical protein CLIBASIA_02165 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 423/423 (100%), Positives = 423/423 (100%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH
Sbjct: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT
Sbjct: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF
Sbjct: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK
Sbjct: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG
Sbjct: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360
           CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR
Sbjct: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360

Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420
           KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL
Sbjct: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRL 420

Query: 421 PFF 423
           PFF
Sbjct: 421 PFF 423


>gi|315122874|ref|YP_004063363.1| hypothetical protein CKC_05650 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496276|gb|ADR52875.1| hypothetical protein CKC_05650 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 448

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 302/423 (71%), Positives = 363/423 (85%), Gaps = 1/423 (0%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFLSP+ESV+ FVRSLV PAHILVAVSGGSDS+GLLIALHS+LSD SF  IK SAISVDH
Sbjct: 1   MFLSPVESVKSFVRSLVCPAHILVAVSGGSDSIGLLIALHSILSDNSFRAIKISAISVDH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +R+ AKDEV+YV D+CSRL I H+VV WK+ KP+TGLMAAAR+ARYALI ++A  I AT
Sbjct: 61  GIRDEAKDEVKYVFDICSRLGIPHAVVVWKDQKPKTGLMAAARKARYALIVDYAMKIGAT 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           L++TAHTFDDQLETVYMRSQRDYAEKGMGLSG+ +T+LYD+ LWI+RPFL CRREDIRSF
Sbjct: 121 LVVTAHTFDDQLETVYMRSQRDYAEKGMGLSGIPETVLYDMRLWIARPFLCCRREDIRSF 180

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           LLQRNI WCEDPSN DDRFERVRVRR ++DID H +Y K++KF++LR+ VNN VA LIP+
Sbjct: 181 LLQRNIGWCEDPSNADDRFERVRVRRLIQDIDPHKMYRKIEKFRNLRIAVNNNVATLIPQ 240

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           YL VH +S+IA+S+++LNID  LL YLL+VS AICGG+ S PGYRSMERV+ +LK+ K+G
Sbjct: 241 YLKVHCQSVIALSENVLNIDLILLSYLLKVSIAICGGKTSFPGYRSMERVIAYLKNQKQG 300

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360
           C+SIGRVVIDRR NFLWITRAVR+LPT+ L+ +ET VWDGRY+F N S+  I+IG + Y 
Sbjct: 301 CISIGRVVIDRRVNFLWITRAVRDLPTVKLHFKETAVWDGRYRFTNSSNESIRIGAKVYN 360

Query: 361 KA-DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419
           K  D  SG+P I+AQRA SS+PS+EGG+P++APFSRF+T FDLPVA+A SISF KVFIP+
Sbjct: 361 KEMDFSSGMPSIVAQRAFSSLPSEEGGEPVIAPFSRFITIFDLPVAHAISISFDKVFIPQ 420

Query: 420 LPF 422
            PF
Sbjct: 421 SPF 423


>gi|218461257|ref|ZP_03501348.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli Kim 5]
          Length = 493

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 165/485 (34%), Positives = 236/485 (48%), Gaps = 72/485 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++  F+ SL  PA ILVA+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPHAAILQFLASLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHRLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE + V+ +C+ L I H + +W+  KP+TG+MAAAREARY L++E A+ + A LI 
Sbjct: 67  AGSADEAQQVAALCASLGIPHIIAAWQGDKPKTGVMAAAREARYDLLAESAERLGANLIA 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT DDQ ET+ MR  R         SG+ D +L++   WI RP L   R DIR+FL +
Sbjct: 127 TGHTLDDQRETLQMRGMRTEQVS----SGIADAVLFNRRFWILRPLLFSSRADIRAFLRE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R + W EDPSN D ++ERVR+RR +      A+   ++   + R  +++  A  + ++  
Sbjct: 183 RGVPWIEDPSNEDVKYERVRIRRRLS--ADPAMETDIRAAWEARRALSSRAADWLDRHFR 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +H   +  +S D L  D  +L Y L    A+ GGQ  +PG   M R++ F   G+ G ++
Sbjct: 241 LHGGLLGQVSVDGLRQDRAVLDYALGRLTAVFGGQPFVPGRAQMARLLSFATGGEPGRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
           IGRVV DRR + L+ TR  R +  +IL P E  VWDGR++  N S   + I  Q+   + 
Sbjct: 301 IGRVVFDRRRDGLYFTRESRGIVPMILRPGEAGVWDGRFEAVNGSGETVTIKAQATHYSL 360

Query: 364 VP----------------------------------------------------SGIPPI 371
           +P                                                     G+P  
Sbjct: 361 IPVSSGLRPRDVTGILPPRVGAVDDSTKQGESSAPKDLGALDSCDEHRNEGEWSRGLPKA 420

Query: 372 IAQRALSSMPSKE--------------GGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFI 417
             +RA++S P+                   P  APF RF+T+FD   A   S  F     
Sbjct: 421 AWKRAVASAPAFAVDGHPLSLQSVGSIHLTPYFAPFDRFLTRFDFIFADRLSAVFAMAPY 480

Query: 418 PRLPF 422
             LPF
Sbjct: 481 AGLPF 485


>gi|190893272|ref|YP_001979814.1| cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CIAT 652]
 gi|190698551|gb|ACE92636.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CIAT 652]
          Length = 458

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 164/450 (36%), Positives = 233/450 (51%), Gaps = 37/450 (8%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++R F+ SL  PA ILVA+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPHAAIRQFLLSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHGLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE + V+ +C+ L I H + +W+  KP+TG+MAAAREARY L++E A+   A LI+
Sbjct: 67  AGSADEAQQVAALCASLGIPHIIAAWQGEKPKTGIMAAAREARYELLAESAERFGANLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT+DDQ ET+ MR  R         SG+ D +L+D   WI RP L   R DIRSFL +
Sbjct: 127 TGHTYDDQRETLAMRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R ++W +DPSN D ++ERVRVRR +      A    ++     R+ +++A A  + +Y T
Sbjct: 183 RRVAWIDDPSNEDVKYERVRVRRQLSP--DPATETDIRAAWKERLALSSAAAEWLDRYFT 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +    +  +  D L  D  +L Y L    A+ GGQ   PG   MER++LF    +   ++
Sbjct: 241 LQGGLLGQVLPDGLRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNEPRRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358
           +GRVV D R + L++ R  R +  L L   E  VWDGR++  N S +  +I  Q      
Sbjct: 301 VGRVVFDLRRDGLYLARESRGILPLTLRSGEAGVWDGRFEAANGSGATTRIEAQGAAARK 360

Query: 359 ------------YRKADVPSGIPPIIAQRALSSMPSKEGGK--------------PLLAP 392
                         +     G+P    +RA++S P   G +              P  AP
Sbjct: 361 DLGGARDSCDEHRNEGGESRGLPKAAWKRAVASAPVLSGEEVPLSPESIQAIHLTPYFAP 420

Query: 393 FSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
           F RF+T+FD   A   S  F       +PF
Sbjct: 421 FDRFLTRFDFIFADRLSAVFAMAPYAGVPF 450


>gi|327193463|gb|EGE60359.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CNPAF512]
          Length = 501

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 165/478 (34%), Positives = 237/478 (49%), Gaps = 65/478 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++R F+ SL  PA ILVA+SGGSDS GLL+ L   +      K    A +VDH LR
Sbjct: 7   SPHAAIRQFLLSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKASLCAATVDHGLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE + V+ +C+ L I H + +W+  KP+TG+MAAAR+ARY L++E A+   A LI+
Sbjct: 67  AGSADEAQQVAALCASLGIPHIIAAWQGEKPKTGIMAAARKARYELLAESAERFGANLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT+DDQ ET+ MR  R         SG+ D +L+D   WI RP L   R DIRSFL +
Sbjct: 127 TGHTYDDQCETLAMRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R ++W +DPSN D ++ERVRVRR +      A    ++     R+ +++A A  + ++  
Sbjct: 183 RRVAWIDDPSNEDVKYERVRVRRQLS--ADPATETDIRAAWKERLALSSAAAEWLDRHFR 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +    +  +  D L  D  +L Y L    A+ GGQ   PG   MER++LF    +   ++
Sbjct: 241 LQGGLLGQVLPDGLRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNEPRRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
           +GRVV D R + L++ R  R +  L L P E  VWDGR++  N S + I+I  Q  R + 
Sbjct: 301 VGRVVFDLRRDGLYLARESRGILPLTLRPGEAGVWDGRFEAANGSGATIRIEAQGARSSP 360

Query: 364 VPS---------------------------------------------GIPPIIAQRALS 378
           +P+                                             G+P    +RA++
Sbjct: 361 IPAPVTGIQPPRVGAVNDSTVPDESAARKDLGARDSCDERRNEGGESRGLPKAAWKRAVA 420

Query: 379 SMPSKEGGK--------------PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
           S P   G +              P  APF RF+T+FD   A   S  F       LPF
Sbjct: 421 SAPVLSGEEVPLSPESIQAINLTPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGLPF 478


>gi|86359050|ref|YP_470942.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CFN 42]
 gi|86283152|gb|ABC92215.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli CFN 42]
          Length = 486

 Score =  368 bits (945), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 157/478 (32%), Positives = 233/478 (48%), Gaps = 65/478 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP E++  F+ SL  PA ILVA+SGGSDS GLL+ L   +      ++   A +VDH LR
Sbjct: 7   SPREAIVQFLTSLQSPACILVAISGGSDSTGLLLLLAEAMKAAPDLEMSLCAATVDHGLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE R V+ +C+ L I H +  W+  KP+TG+MAAAREARY+L+++ A+ + A LI+
Sbjct: 67  AGSADEAREVAALCASLGIPHMIARWQGEKPKTGIMAAAREARYSLLADAAEALGANLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT DDQ ET+ MR  R         SG+ D +L+D  LWI RP L   R DIR+FL  
Sbjct: 127 TGHTLDDQRETLRMRGMRTEQLS----SGIADAVLFDRRLWILRPLLFATRADIRAFLRA 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R + W +DPSN D R+ERVR RR +      A+   ++   + R+ +++     + ++  
Sbjct: 183 RGVRWIDDPSNEDIRYERVRTRRQLS--AGPAMPTDIRAVWEERLTLSSRAGEWLDRHFQ 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +H   +  +  + L  D  +L Y L    A+ GGQ  +PG   M+R++ F      G ++
Sbjct: 241 LHGGVLGQVMPEGLRQDRAVLDYTLGRLTAVFGGQPFVPGRVQMDRILAFASGSGLGRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
            GRVV D R + L++ R  R +  L+L P E  VWDGR++ +N   + I +  Q+ R + 
Sbjct: 301 AGRVVFDLRRDGLYLARENRGIMPLVLRPGEAGVWDGRFRVENRLGTTISVEAQTTRSSL 360

Query: 364 VP---------------------------------------------SGIPPIIAQRALS 378
           +P                                               +P    +RA++
Sbjct: 361 IPVPVTGIQPPRVGAVNDSSMRNESCAPKNFGALNSCDKHRNEGGWGKHLPKAAWKRAIA 420

Query: 379 SMPSKEGG--------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
           S P+                   P  APF RF+T+FD   A   S  F       LP 
Sbjct: 421 SAPALSSDGAYLSSKSALTAELTPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGLPL 478


>gi|222149666|ref|YP_002550623.1| hypothetical protein Avi_3626 [Agrobacterium vitis S4]
 gi|221736648|gb|ACM37611.1| Conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 454

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 137/433 (31%), Positives = 229/433 (52%), Gaps = 19/433 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +SP  ++  F+  +  P  +LVA+SGGSDS GLL+ALH  L       +   A ++DH L
Sbjct: 28  ISPEAAIAAFLDRINDPLRLLVAISGGSDSTGLLLALHEQLQAMPAKTVTLHAATIDHGL 87

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R+ +  E   V+ +C+ L I H +  W   KP+TG+ AAAR ARY L++E AK I+A  I
Sbjct: 88  RDGSAAEAETVAALCATLGIPHEIRRWTGDKPKTGISAAARAARYQLLAEIAKEIDAAAI 147

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT DDQ+ET+ MR +R    +  GL+GM +++L++ ++WI+RP LR RR+ IR FL 
Sbjct: 148 LTGHTADDQIETIAMREKRSRNPRATGLAGMAESVLFENSIWITRPLLRSRRQAIRVFLQ 207

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            R   W +DPSN +  +ER R+R  +       L       Q+ R+ ++   A L+  + 
Sbjct: 208 DRGHGWVDDPSNDNPAYERARIRAHLSTDQQPGLP------QNERLSLSQGAAALVSTHA 261

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
           T+ +  ++ +   +      +L + L+   A  GGQ   PG  ++ R++   +      V
Sbjct: 262 TMPLPGLVDLDNALFEAPRPILCHALQALIATVGGQPHGPGQDALVRLIALCEQPPGARV 321

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ----- 357
           ++GR +  R  + +++ R  RNLP  I+ P ET +WDGR+   N+  +  ++ P      
Sbjct: 322 TLGRCLAHRHRHGIYLVREGRNLPHGIVKPGETVLWDGRWHISNIGRAESRVQPGETKTD 381

Query: 358 ----SYRKADVPSGIPPI----IAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFS 409
               +   + +P+   P+    +A+++L  +       P++AP+  F+  FD P+A A +
Sbjct: 382 QTSPTLATSPLPASSLPVSLAALARQSLPGIGPNLHATPVIAPYQGFLPGFDWPLAVALA 441

Query: 410 ISFGKVFIPRLPF 422
             F         F
Sbjct: 442 GLFDAPGFLSPCF 454


>gi|218674235|ref|ZP_03523904.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli GR56]
          Length = 486

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 160/478 (33%), Positives = 238/478 (49%), Gaps = 65/478 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++  F+ SL  PA ILVA+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPQAAILQFLESLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHGLR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE R V+ +C+ L I H + +W+  KP+TG+MAAAREARY L++E A+ + A LI+
Sbjct: 67  AGSADEARQVAALCASLGIPHIIAAWQGEKPKTGIMAAAREARYDLLAESAERLGAKLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT DDQ ET+ MR  R         SG+ D +L+D   WI RP L   R +IR+FL +
Sbjct: 127 TGHTLDDQRETLLMRGMRTEQRS----SGIADAVLFDRRFWILRPLLFSSRANIRAFLRE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R+++W +DPSN D ++ERVRVRR +      A  + +    + R+ +++A A  + ++  
Sbjct: 183 RDVAWIDDPSNEDVKYERVRVRRQLS--ADRATEMDIHAAWEARLALSSAAAEWLDRHFR 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +H   +  +S D L  D  +L Y L    A+ GGQ  +PG   MER++ F+  G+ G ++
Sbjct: 241 LHGGLLGQVSVDGLRQDRAVLDYALGRLTAVFGGQPFVPGRAQMERLLSFVTGGEPGRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
           +GRVV D R + L+++R  R +  L+L P    VWDGR++  N S    ++   +   + 
Sbjct: 301 VGRVVFDLRRDGLYLSRESRGILPLVLRPGVAGVWDGRFRVCNGSAVNARMEALAGLSSL 360

Query: 364 VP---------------------------------------------SGIPPIIAQRALS 378
           +P                                              G+P    +RA++
Sbjct: 361 IPVLVTGIQPPRVGAVNDSTKQDESSAPNDLGAEDSCDEHRNKGGEGRGLPKAAWKRAVA 420

Query: 379 SMPSKE--------------GGKPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
           S P+                   P  APF RF+T+FD   A   S  F        P 
Sbjct: 421 SAPAFSVDGHPLSPESVGSIRLAPYFAPFDRFLTRFDFIFADRLSAVFAMAPYAGPPL 478


>gi|241206181|ref|YP_002977277.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860071|gb|ACS57738.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 491

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 165/483 (34%), Positives = 235/483 (48%), Gaps = 70/483 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++  F+ SL  PA ILVA+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPQLAILQFLTSLQSPARILVAISGGSDSTGLLLLLDEAVKAAPHLKISLYAATVDHALR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE R V+ +C+ L IAH+++ W+  KP+TG+MAAAREARY L++  AK   A LI+
Sbjct: 67  AGSADEAREVAALCASLGIAHTIMIWQGDKPKTGIMAAAREARYGLLATAAKEFKADLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HTFDDQ ET+ MR  R         +G+ D +L+D + WI RP L   R DIR+FL +
Sbjct: 127 TGHTFDDQRETLQMRGMRTEQVS----TGIADAVLFDRSFWILRPLLFSTRADIRAFLKE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R + W +DPSN D  +ERVR+RR +       +   ++   + R  +++  A  + ++  
Sbjct: 183 RGVPWIDDPSNEDTTYERVRMRRQLS--VDAGVERTIQAACEERPALSSKGAEWLDRHFR 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +H   +  +  D L  D  +L Y L   AA+ GGQ   PG   MERV+ F+   + G ++
Sbjct: 241 LHGGLLGQVMPDGLRQDRAVLNYALGRLAAVFGGQPFAPGRVQMERVLAFVTGSEPGRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358
            GRVV D R + L++ R  R +  L+L P E  VWDGR+  +N   + I +   +     
Sbjct: 301 AGRVVFDLRRDGLYLARESRGILPLLLQPGEAGVWDGRFYARNGLSTSIAVEAATLYAPS 360

Query: 359 -----------------------------------YRKADVP----------SGIPPIIA 373
                                               R   +P            +P    
Sbjct: 361 FLSSDLTRELSEESSAPKSLGANDTSRFIESITAQTRGGWIPVTSTGMRGRMHHLPKAAW 420

Query: 374 QRALSSMP--SKEGG------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPR 419
           +RA++S P  S EG              P  APF RF+T+FD   A   S  F      R
Sbjct: 421 KRAVASAPVLSAEGNLLTEECARMVELTPYFAPFDRFLTRFDFIFANRLSAVFATAPYAR 480

Query: 420 LPF 422
           LP 
Sbjct: 481 LPL 483


>gi|332716440|ref|YP_004443906.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3]
 gi|325063125|gb|ADY66815.1| tRNA-lysidine synthase [Agrobacterium sp. H13-3]
          Length = 445

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 160/436 (36%), Positives = 245/436 (56%), Gaps = 21/436 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++P+ + R FV +L  P HIL+A+SGGSDS GLL+A H   ++    +++ SA++VDH L
Sbjct: 13  VAPLAAARSFVENLRKPVHILIAISGGSDSTGLLLATHEARAEAGSDRVQLSAVTVDHAL 72

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  + DE   VS +C+ L I H+V  W + KP +G+  A+R ARY+LI+  A  I A L+
Sbjct: 73  RAESADEAHKVSLLCAELGIPHTVRRWDDPKPASGISEASRLARYSLIAGVASDIGADLV 132

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MT HT  DQ ETV MR+ R  + + +GL+GM D +LY    WI RPFL C R++IR F+L
Sbjct: 133 MTGHTLGDQRETVAMRAARSGSSENLGLAGMADAVLYGGRHWIMRPFLTCERQEIRDFVL 192

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            R+  W +DPSN + R+ERVRVR+ +      +      +    R   +   A  + + +
Sbjct: 193 SRSRGWFDDPSNDNARYERVRVRQSLSG----SPPPFDAQAAVKRQAYSEKTAFFLQQNV 248

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
            V   ++  +S + L  D     + L V  A  GG+   P   SM+RV+ FLK+G+ G +
Sbjct: 249 EVFHATLARLSDEGLMPDLPEFRHGLAVLIANLGGRAYFPAASSMDRVLQFLKTGENGRI 308

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSY--- 359
           ++GRV++DRR + L++ R  RN+P L +      +WD R+  +N S   + I        
Sbjct: 309 TVGRVLLDRRKDGLYLFREHRNMPELQVEAGGQGLWDDRFLVKNTSAFPVNIAAGRTGGI 368

Query: 360 -RKADVPSGIPPIIAQRALSSMP----------SKEGG---KPLLAPFSRFMTKFDLPVA 405
              A +   +PP IA++A++ +P          S EG     P LAPF  F+ +FDL +A
Sbjct: 369 VDAAALFPAVPPGIAKQAMAILPQIATLVPPRASPEGAISIVPRLAPFDLFLPRFDLELA 428

Query: 406 YAFSISFGKVFIPRLP 421
            A ++ FG+   P+ P
Sbjct: 429 NAIAVLFGRAAYPQPP 444


>gi|116253706|ref|YP_769544.1| tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258354|emb|CAK09456.1| putative tRNA(Ile)-lysidine synthase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 485

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 160/477 (33%), Positives = 233/477 (48%), Gaps = 64/477 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP  ++  F+ SL  PA IL A+SGGSDS GLL+ L   +      KI   A +VDH LR
Sbjct: 7   SPQLTILQFLTSLQSPARILAAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHALR 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + DE R V+ +C+ L I H+ + W+  KP+TG+MAAAREARY L+   A++  A LI+
Sbjct: 67  AGSADEARDVAALCASLGIPHTTMIWEGDKPKTGIMAAAREARYGLLETAAESFEADLIV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HTFDDQ ET+ MR  R         +G+ D +L++   WI RP L   R DIR+FL +
Sbjct: 127 TGHTFDDQRETLQMRGMRTEQIS----TGIADAVLFNRRFWILRPLLFSSRADIRAFLKE 182

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R + W +DPSN D ++ERVR+RR +   D   +   +    + R+ +++  A  + ++  
Sbjct: 183 RGVPWIDDPSNEDIKYERVRMRRQLS--DDAGMEKDIGAAWEERLALSSRGAEWLDRHFR 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +H   +  +  D L  D  +L Y+L   AA+CGGQ  +PG   MERV+ F      G ++
Sbjct: 241 LHGGLLGQVIPDGLRQDRAVLDYVLARLAAVCGGQPFVPGRAQMERVLTFATGTGLGRMT 300

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358
            GRVV D R + L++ R  R +  L+L P E  VWDGR+  +N   + I +   +     
Sbjct: 301 AGRVVFDLRRDGLYLARESRGILPLVLQPGEAGVWDGRFYARNGLSTSIVVEAATLYAPS 360

Query: 359 -----------------------------YRKADVP----------SGIPPIIAQRALSS 379
                                         R   +P            +P    +RA++S
Sbjct: 361 FLCLSQESSASKSLGAKDTSRFIGSITAQTRGGWIPVTSTGMRERMHHLPKAAWKRAVAS 420

Query: 380 MPSKEGGK--------------PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
            P+    +              P  APF RF+T+FD   A   S  F      RLP 
Sbjct: 421 APALTSEEAPLFEESARMVELTPYFAPFDRFLTRFDFIFANRLSAVFATAPYARLPL 477


>gi|15891237|ref|NP_356909.1| hypothetical protein Atu3711 [Agrobacterium tumefaciens str. C58]
 gi|61216678|sp|Q8U9L7|TILS_AGRT5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15159602|gb|AAK89694.1| Conserved Hypothetical Protein [Agrobacterium tumefaciens str. C58]
          Length = 443

 Score =  353 bits (907), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 160/435 (36%), Positives = 237/435 (54%), Gaps = 21/435 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++P+ +   FV SL  P HILVA+SGGSDS GLL+AL    +    G ++ SA++VDH L
Sbjct: 13  VAPLAAASAFVESLRKPTHILVAISGGSDSTGLLLALQEAKAADDDG-LRLSAVTVDHAL 71

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  + DE R V+ +C+ L I H+   W   KP +GL  A+R ARY LI++ A+ I A L+
Sbjct: 72  RPESADEARKVAMLCAELGIPHTTRRWDGPKPASGLSEASRLARYRLIADVAREIGADLV 131

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           ++ HT  DQ ETV MR+ R      +GLSGM D +LYD +LWI RPFL C R+ IR ++ 
Sbjct: 132 VSGHTIGDQRETVAMRAARSGGSDNLGLSGMADAVLYDAHLWIMRPFLACERQVIRDYVS 191

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            R+  W +DPSN + R+ERVRVR+ +     H+           R  ++   A+ + +  
Sbjct: 192 SRSRHWLDDPSNENIRYERVRVRQTL----PHSPIALDDSTAVRRQMLSERTAVFLRERA 247

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
            V   ++  ++ D +N D     + L    A  GG+   P   SMERV+ FLK+G+ G +
Sbjct: 248 QVFHAALARLADDDVNPDLPEFRHGLAALIAALGGRSYFPAASSMERVLRFLKTGETGRM 307

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362
           ++GRV++DRR + L+I R  RNLP L +      VWD R+  +N SD  I +       A
Sbjct: 308 TVGRVLLDRRRDGLYIFREQRNLPELQIESSGQAVWDDRFLVKNGSDFPINVAAGRVGTA 367

Query: 363 DVPSGI----PPIIAQRALSSMPSKEGG------------KPLLAPFSRFMTKFDLPVAY 406
              + +    P  + + A++ +P                  P LAPF  F+ +FDL +A 
Sbjct: 368 AQAAALFPSAPSGVVKPAMAGLPQIAAAAEGWVSTPEVAITPRLAPFDLFLPRFDLELAN 427

Query: 407 AFSISFGKVFIPRLP 421
           A +  FG+   P+ P
Sbjct: 428 AIANLFGRPAYPQPP 442


>gi|227823305|ref|YP_002827277.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
 gi|227342306|gb|ACP26524.1| tRNA(Ile)-lysidine synthase [Sinorhizobium fredii NGR234]
          Length = 445

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 154/439 (35%), Positives = 225/439 (51%), Gaps = 22/439 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  + I + R F+RS + P  ILVA+SGGSDS GLL+ALH+ L    F      A +VDH
Sbjct: 1   MPEAVIAAARRFLRSFIKPGRILVAISGGSDSKGLLVALHAALGTADFEGFSLVACTVDH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  + DE   V   C+ L I H V  W   KP+ G+ AAAR  RY +++E A    A 
Sbjct: 61  ALRSDSADEAAAVGAFCAGLGIPHQVCRWPGDKPRAGIQAAARLKRYDMLAEAAAVFRAD 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I T HT DDQ ET+ MR  RD   +G G +GM   +LY    W+ RPFL  RR DIR++
Sbjct: 121 CIATGHTLDDQNETIAMRGARDQG-QGHGSAGMAAAMLYGRRTWVLRPFLGLRRADIRAY 179

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L  R I W +DPSN +  FER RVR     +    +    ++   LR+  +   A+L+ +
Sbjct: 180 LGGRGIGWFDDPSNENPLFERARVR---ASLAASGVAPPPRRGGQLRMASSARAAVLLGE 236

Query: 241 YLTVHMRSIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
           +L VH   +  + +     ID       L    A+ GG+  LPG  ++ER+  FL+SG+ 
Sbjct: 237 HLRVHEGLVAEVAAAQAGRIDDPDWRRALMTVGAVIGGREHLPGRATIERLSGFLRSGEA 296

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI---QIGP 356
           G ++ GRVV DRR + L++ R  RNLP L +   E+  WDGR+   ++  +L    +   
Sbjct: 297 GRMTAGRVVFDRRRSGLYLYREPRNLPALRIGANESGTWDGRFNITSVGTALTICAEAEG 356

Query: 357 QSYRKADVPSGIPPIIAQRALSSMP--------------SKEGGKPLLAPFSRFMTKFDL 402
             +R+    +G+P  +A+RA    P              ++   +  + P+  F+  FD 
Sbjct: 357 GVWRQRLFAAGLPEGVAKRASLVAPRVAPEDVGSLGSTAAEAKVECRIGPYDTFLPGFDR 416

Query: 403 PVAYAFSISFGKVFIPRLP 421
            +A    + FG+   P  P
Sbjct: 417 IMADTIGLLFGRDRYPAPP 435


>gi|222086970|ref|YP_002545504.1| cell cycle protein MesJ/cytosine deaminase-related protein
           [Agrobacterium radiobacter K84]
 gi|221724418|gb|ACM27574.1| cell cycle protein MesJ/cytosine deaminase-related protein
           [Agrobacterium radiobacter K84]
          Length = 429

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 158/429 (36%), Positives = 231/429 (53%), Gaps = 14/429 (3%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           P  +   F+ SL  PAHILVA+SGGSDS GLL AL   L       +  SA ++DH LR 
Sbjct: 4   PEAAAADFIHSLFKPAHILVAISGGSDSTGLLAALAEHLKSLPNSDVTLSAATIDHGLRA 63

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            A +E R V+  C+ L IAH    W+  KP++G+MAAAREARY L++E +  I+A +I+T
Sbjct: 64  EAAEEAREVAAFCASLGIAHVARRWEGEKPKSGIMAAAREARYGLLAEISAEISANVIVT 123

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AHT DDQ ET+ MR+ R    +    +G+ + +L+D  +WI+RPFL CRR DIR++L  R
Sbjct: 124 AHTIDDQRETLAMRTARLNEGEAGAGTGISEAMLFDRRIWIARPFLACRRADIRAYLNGR 183

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            +SW  DPSN D R+ER+R R+ +                  R  ++   A  + +++ V
Sbjct: 184 GMSWLNDPSNEDVRYERIRTRKSLLQ---EPALFPAPDAAAARAALSADAAAWLGEHVAV 240

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
           H   + AIS+  L+ D  ++ Y L   AA+ GG+   PG   M R++ F+  G+ G  + 
Sbjct: 241 HAGVLCAISRKALSADEGVIAYALSYLAAVFGGEPYGPGRERMRRILDFIGEGRPGRRTA 300

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA-D 363
           G VV D R + L++ R  R++  L+L      +WDGR+Q  N   + I +       A +
Sbjct: 301 GGVVFDLRRDGLYLMRESRDIRPLVLAAGADGIWDGRFQIGNHGAAAICVEATGTTGAME 360

Query: 364 VPSGIPPIIAQRALSSMPSKEGGK----------PLLAPFSRFMTKFDLPVAYAFSISFG 413
            P G+P    QRA + +P    G           P LAPF RF+T+F+L  A   +   G
Sbjct: 361 FPEGLPKGAVQRAGAVLPKVVAGDEGAAASVTIAPYLAPFDRFLTRFNLTFANRLAACLG 420

Query: 414 KVFIPRLPF 422
           +      P 
Sbjct: 421 REPYVPPPL 429


>gi|15966489|ref|NP_386842.1| hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
 gi|307300474|ref|ZP_07580254.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C]
 gi|307318339|ref|ZP_07597774.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83]
 gi|61216708|sp|Q92JY3|TILS_RHIME RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15075760|emb|CAC47315.1| Hypothetical protein SMc02940 [Sinorhizobium meliloti 1021]
 gi|306896021|gb|EFN26772.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti AK83]
 gi|306904640|gb|EFN35224.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium meliloti BL225C]
          Length = 453

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 159/446 (35%), Positives = 231/446 (51%), Gaps = 28/446 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  + +++ R F+RS + P  ILVAVSGGSDSMGLL+ALHS ++         +A +VDH
Sbjct: 1   MPHAVLDTARNFLRSFITPRRILVAVSGGSDSMGLLVALHSAIAADERRGFSLAACTVDH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V+  C+ L IAH +  W+ +KP TG+ AAAR  RY L++E A  + A 
Sbjct: 61  ALRPQSACEAEDVAAFCAALGIAHRICRWEGAKPSTGIQAAARNKRYELLAEAADALGAD 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYA-------EKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            I   HT DDQ ETV MR  R           +G G +GM  ++LY   +W+ RPFL   
Sbjct: 121 CIAIGHTRDDQQETVAMRIARGKGDGAGDGQGEGHGGAGMAASMLYGRRIWVLRPFLGLA 180

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           R +IRSFL  R +SW +DPSN +  FERVRVR  +         L   +    R   +  
Sbjct: 181 RAEIRSFLQARGVSWIDDPSNANPAFERVRVRARIATSGGMPTPLGNGR---QRAASSAR 237

Query: 234 VAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            A LI K + VH   +  +S +    ID       L   A++ GG+  +P + +++R+  
Sbjct: 238 AAALIEKRIRVHEALVAEVSARHAGEIDDPDWRRALLTVASVLGGREHMPAFATVQRLSQ 297

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352
           FL+SG+ G ++ GRVV DRRA+ L++ R  RNLP L + P     WDGR+  ++   ++ 
Sbjct: 298 FLRSGEPGRMTAGRVVFDRRASGLYLYREARNLPVLAVGPGRQGAWDGRFTVKSRGPAVT 357

Query: 353 QIGPQSYR---KADVPSGIPPIIAQRALSSMP---SKEGGKPLLAP-----------FSR 395
                S R   K  + +G+P  IA+R  +  P   S +G                  +  
Sbjct: 358 VAADASGRLWTKRLIDAGLPAGIAKRGSTVAPEIASTDGAGLAFGEAPAQVEYHIGLYDT 417

Query: 396 FMTKFDLPVAYAFSISFGKVFIPRLP 421
           F+  FD  +A A ++SFG+   P  P
Sbjct: 418 FLPGFDRIMADAVAVSFGRDRYPAPP 443


>gi|209550773|ref|YP_002282690.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536529|gb|ACI56464.1| tRNA(Ile)-lysidine synthetase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 492

 Score =  329 bits (843), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 157/485 (32%), Positives = 230/485 (47%), Gaps = 71/485 (14%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
            SP E++  F+ SL  P  ILVA+SGGSDS GLL+ L   +      KI   A +VDH L
Sbjct: 6   RSPREAILQFLSSLQSPVRILVAISGGSDSTGLLLLLDEAVKAAPHLKISLCAATVDHAL 65

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  + DE R V+ +C+ L IAH++++W+  KP TG+MAAAREARY+L++E A+ + A LI
Sbjct: 66  RAGSADEAREVAALCASLGIAHAIMTWQGDKPITGIMAAAREARYSLLAEAAEALGADLI 125

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAHT DDQ ET+ MR  R         +G+ D +L+D + WI RP L   R DIR+FL 
Sbjct: 126 VTAHTLDDQRETLAMRGMRTEEVS----TGIADAVLFDRHFWILRPLLFSSRADIRAFLS 181

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           ++   W +DPSN D ++ERVR+R+ +           +    D R+ V+   A  +  + 
Sbjct: 182 EQGAGWIDDPSNEDVKYERVRIRQQLSADGGAE--ANISAVWDERLAVSAKGAEWLDHHF 239

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
            +H   +  +  + L  D  +L Y+L    A+ GGQ   PG   MER++ F   G+   +
Sbjct: 240 KLHGGLLGQVMPEGLRQDRAVLDYVLGRLTAVFGGQPFAPGRAQMERLVAFAAGGEPARM 299

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362
           ++GRVV D R + L++TR  R +  L+L P E  VWDGR++  N S   ++I  QS R +
Sbjct: 300 TVGRVVFDLRRDGLYLTRESRGILPLVLQPGEAGVWDGRFEAVNRSAIDVRIEAQSGRSS 359

Query: 363 DVP----SGIPPIIAQRALSSMP---------------------------SKEGGKPLLA 391
            +P       PP +     S++P                              G     A
Sbjct: 360 LIPVLVTGIQPPRVGAVNDSTIPKESPAPKDLGALDSCDIPRVKPEDRNEGGWGAGLPKA 419

Query: 392 PFSR-----------------------FMTKF-----------DLPVAYAFSISFGKVFI 417
            + R                        +T +           D   A   S  F     
Sbjct: 420 AWKRAIASAPAISAQEVPLSAETAEAIHLTPYFAPFDRFLTRFDFIFANRLSAVFATAPY 479

Query: 418 PRLPF 422
            R P 
Sbjct: 480 ARPPL 484


>gi|150397822|ref|YP_001328289.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium medicae WSM419]
 gi|150029337|gb|ABR61454.1| tRNA(Ile)-lysidine synthetase [Sinorhizobium medicae WSM419]
          Length = 453

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 159/440 (36%), Positives = 235/440 (53%), Gaps = 28/440 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++  +F+RS   P  ILVAVSGGSDSMG+L+ALH+ ++         +A +VDH LR  +
Sbjct: 7   DTASYFLRSFTRPCRILVAVSGGSDSMGVLMALHAAIATGEHPGFSLAACTVDHALRPQS 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +E   V+  C  L IAH    W+ +KP TG+ AAAR+ RY L++  A+ + A  I+T H
Sbjct: 67  AEEAASVAAFCRTLDIAHRTRRWEGAKPATGIQAAARKIRYELLAVAAEALGADCIVTGH 126

Query: 127 TFDDQLETVYMRSQRDYAE-------KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +DQ ET+ MR  R           +G G +GM  T+LY   +W+ RPFLR  R +IRS
Sbjct: 127 TREDQHETIEMRRARSNGPGIDDGEGEGHGGAGMAATMLYGRRVWVLRPFLRLGRAEIRS 186

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           FL  R ++W +DPSN +  FERVRVR  +   D   + L        R   + A A LI 
Sbjct: 187 FLDARAVAWIDDPSNANHAFERVRVRARIAASDDMQMPL---WGGRQRAASSAAAAGLIE 243

Query: 240 KYLTVHMRSIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
             + VH   +  I +++    D       L + A+  GG+  LP   +++R+  FL++GK
Sbjct: 244 DRIRVHEALVAEITAENAGATDDPDWRRALLIVASALGGRDHLPARATVQRLSEFLRAGK 303

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358
            G ++ GRVV DRRA  L++ R  RNLP L L P    +WDGR++  +   +L+     S
Sbjct: 304 PGRMTAGRVVFDRRAGGLYLYREARNLPVLALGPGGQGLWDGRFKITSGGPALVVTADAS 363

Query: 359 YRKAD---VPSGIPPIIAQRALSSMP--------SKEGGKPL------LAPFSRFMTKFD 401
            R++    + +G+P  I +RA +  P            G+ L      +APF  F+  FD
Sbjct: 364 GRRSAQRLIDAGLPMGIVKRASTVAPGIAPADAAGIAYGEALAEIEYNIAPFDTFLPGFD 423

Query: 402 LPVAYAFSISFGKVFIPRLP 421
             +A A ++SFG+   P  P
Sbjct: 424 RIMADAVAVSFGRERYPAPP 443


>gi|319781030|ref|YP_004140506.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166918|gb|ADV10456.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 457

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 143/432 (33%), Positives = 212/432 (49%), Gaps = 35/432 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           + AVSGGSDS   L+ L     DR     K  A+++DH LR  +  E + V+ +C+RL I
Sbjct: 23  VAAVSGGSDSTA-LLLLLKHHLDRRAPATKLLAVTIDHGLRSGSAAEAQTVAKLCARLGI 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           +H +++W   KP TGL AAAREARY L++E A+     +I+T HT DDQ ETV MR  RD
Sbjct: 82  SHRILTWSGPKPSTGLPAAAREARYRLLAEAAQAEGIGMILTGHTADDQAETVLMRHARD 141

Query: 143 YAE-----KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             +      G GL+GM    LYD  +WI RP L  RR  +R  L ++N+ W +DP+N D 
Sbjct: 142 AGQGHAGMAGRGLAGMAPATLYDWRIWIVRPLLGVRRAVLRDVLRRQNVGWADDPTNVDA 201

Query: 198 RFERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            FER RVR  +    +     + +   +    R ++  +   LI  + +     +I +  
Sbjct: 202 AFERPRVRAALAGESVEHVKGMLMLAGQAALERRQLGASATDLIDGFASQPAIGLICLDP 261

Query: 255 DILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            +L+  D     Y LR+  A  GG   LP     E +   L++G   C ++ R V+D R 
Sbjct: 262 CLLSSGDEQAAIYALRILLATTGGIAFLPDEARSEALFGRLRAGFL-CATLSRTVVDSRR 320

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIGP----QSYRKADVPSGI 368
           + +++ R  R LP        +T+WDGR     N S S + I P     + R A      
Sbjct: 321 SGIFLRREARGLPAAAAATG-STLWDGRRHITLNDSSSALLIAPLGAAAAKRLATGEGKT 379

Query: 369 PPIIAQRALSSMPSKEG------------------GKPLLAPFSRFMTKFDLPVAYAFSI 410
           P  + + AL++ P+                      +P++APF RF+  FDL +A A + 
Sbjct: 380 PSSLMRAALAAEPAVWQAGECLGLPGYGLKSATVEARPVVAPFGRFLPSFDLALARAVAG 439

Query: 411 SFGKVFIPRLPF 422
             G   +P LPF
Sbjct: 440 LIGAAPVPPLPF 451


>gi|13473327|ref|NP_104894.1| hypothetical protein mll3884 [Mesorhizobium loti MAFF303099]
 gi|61216717|sp|Q98F87|TILS_RHILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|14024076|dbj|BAB50680.1| mll3884 [Mesorhizobium loti MAFF303099]
          Length = 454

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 140/429 (32%), Positives = 203/429 (47%), Gaps = 32/429 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           + AVSGGSDS  LL+ L     DR+    K  A+++DH LR+ +  E + V+ +C+   I
Sbjct: 23  VAAVSGGSDSTALLLLLKHHF-DRTGSSAKLLAVTIDHGLRQGSAAEAQAVAKLCAERGI 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           AH  ++W   KP TGL AAAR+ARY L++E A+     LI+T HT DDQ ETV MR  RD
Sbjct: 82  AHRTLTWTGRKPSTGLPAAARDARYHLLAEAARAEGIGLIVTGHTADDQAETVLMRHARD 141

Query: 143 YA---EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                  G GL+GM    LYD   WI RP L  RR  +R FL + ++ W EDP+N D+ F
Sbjct: 142 RELADLAGRGLAGMAPATLYDWREWIVRPLLGTRRSALRDFLRREHVGWAEDPTNIDEAF 201

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           ER RVR  +       +   ++        R ++  + A LI +  +     +I +   +
Sbjct: 202 ERPRVRAALAGESAGHMENTLRLAGQAAVERGQLGASAANLIRRIASQPSTGLIRLDPAL 261

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L  D     Y LR+  A  GG   LP       + + LK+G   C ++ R V+D R   L
Sbjct: 262 LIADDQAAIYALRILLATAGGAAFLPDQARSAALFVRLKAGFL-CATLSRTVVDFRHAGL 320

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIGPQSYRKADV----PSGIPPI 371
           ++ R  R LP      +  T+WDGR     N     + I P     A          P  
Sbjct: 321 FLRREARGLPPAATAVD-NTIWDGRRHITLNDMSGALLIAPLGAAAARRLAIDDGETPAS 379

Query: 372 IAQRALSSMPSKEG------------------GKPLLAPFSRFMTKFDLPVAYAFSISFG 413
           + + AL++ P+                      +P+++PF+RF+  FDL  A A +   G
Sbjct: 380 LIRAALAAEPTLLQAFENLGLPQGEPRLPVFAARPVVSPFARFLPSFDLAPARAVAELIG 439

Query: 414 KVFIPRLPF 422
              +P  P 
Sbjct: 440 ASPLPASPL 448


>gi|260467069|ref|ZP_05813249.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075]
 gi|259029178|gb|EEW30474.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium opportunistum WSM2075]
          Length = 455

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 140/430 (32%), Positives = 211/430 (49%), Gaps = 33/430 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           + AVSGGSDS   L+ L     DRS    K  A+++DH LR+ +  E + V+ +C+   I
Sbjct: 23  VAAVSGGSDSTA-LLLLLKHHLDRSAPSAKLLAVTIDHGLRQDSAAEAQAVAKLCAERGI 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           AH  + W   KP TGL AAAREARY L++  A+     LI+T HT DDQ ETV MR  RD
Sbjct: 82  AHRTMIWSGRKPSTGLPAAAREARYRLLASAARAEGIGLIVTGHTADDQAETVLMRHARD 141

Query: 143 YA---EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            +    +G GL+GM    LYD   WI RP L  RR  +R FL  +++ W EDP+N+D+ F
Sbjct: 142 GSLGHVQGRGLAGMAPATLYDWREWIVRPLLGTRRAALRDFLQSKHVGWAEDPTNSDESF 201

Query: 200 ERVRVRRFVRDIDLHAL---YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           ER RVR  +   ++  +    +   +    R ++    A LI ++ +     ++ +   +
Sbjct: 202 ERPRVRAALAGDNVRRMDEALVLASQAAIERGQLGLDAADLIRRFASQPATGLVRLDPQL 261

Query: 257 LNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
            +  D     Y LR+  A  GG   LP     E +   LK+G   C ++ R V+D R   
Sbjct: 262 RSTGDERAAIYALRILLATVGGLAFLPDQARGEVLFGRLKAGFL-CATLSRTVVDFRRAG 320

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI----QIGPQSYRKADVPSG-IPP 370
           +++ R  R LP      +  T+WDGR        S       +G  + ++  + +G  P 
Sbjct: 321 IFLRREARGLPPAAAAID-NTIWDGRRHITLNDSSAGLLIAPLGAAAAKRLPIDAGETPA 379

Query: 371 IIAQRALSSMPSKEG------------------GKPLLAPFSRFMTKFDLPVAYAFSISF 412
            + + AL++ P+                      +P++APF+RF+  FDL  A A +   
Sbjct: 380 SLMRAALAAEPTSRQAFENPDVPQGEPASPGFDARPVVAPFARFLPSFDLAPARAIAGLI 439

Query: 413 GKVFIPRLPF 422
           G   +P LPF
Sbjct: 440 GAPSLPALPF 449


>gi|16272353|ref|NP_438566.1| cell cycle protein [Haemophilus influenzae Rd KW20]
 gi|260580533|ref|ZP_05848361.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Haemophilus influenzae RdAW]
 gi|1175240|sp|P44689|TILS_HAEIN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1573375|gb|AAC22063.1| cell cycle protein (mesJ) [Haemophilus influenzae Rd KW20]
 gi|260092875|gb|EEW76810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Haemophilus influenzae RdAW]
          Length = 430

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 147/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLCQKQPHLPPLSIRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG+G       +     + I RP L   R  + ++  +  ++W  D SN D+R++R
Sbjct: 137 GSGLKGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +  I      I N   
Sbjct: 194 NFLRNEI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        NL D L  +  Q      +
Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353


>gi|145640364|ref|ZP_01795948.1| DNA mismatch repair protein [Haemophilus influenzae R3021]
 gi|145274950|gb|EDK14812.1| DNA mismatch repair protein [Haemophilus influenzae 22.4-21]
          Length = 430

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 148/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A    ++  D+C +L+
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSPNADSWAKHCQDLCDQLQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  + ++  +  ++W  D SN D+R++R
Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +  I      I N   
Sbjct: 194 NFLRNEI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--KNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        NL D L  +  Q      +
Sbjct: 307 RRYQDSLYLTKRFSDLTKCCLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353


>gi|301169106|emb|CBW28703.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae 10810]
          Length = 430

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 148/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  + ++  + N++W  D SN D+R++R
Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKENLNWITDESNEDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        NL D L  +  Q      +
Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353


>gi|145634599|ref|ZP_01790308.1| pyridoxine kinase [Haemophilus influenzae PittAA]
 gi|145268144|gb|EDK08139.1| pyridoxine kinase [Haemophilus influenzae PittAA]
          Length = 430

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/355 (25%), Positives = 151/355 (42%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R ++  ++ Q N+SW ED SN D+RF+R
Sbjct: 137 GSGLQGLGAMQKEGQLF---GMSILRPLLSFTRNELEDYIQQENLSWVEDESNGDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        NL D+L  +  Q      +
Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDNLGNLTVQENEHNLI 353


>gi|229844434|ref|ZP_04464574.1| pyridoxine kinase [Haemophilus influenzae 6P18H1]
 gi|229812683|gb|EEP48372.1| pyridoxine kinase [Haemophilus influenzae 6P18H1]
          Length = 430

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   R     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAVAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG+G       +     + I RP L   R  +  +  +  ++W  D SN D+R++R
Sbjct: 137 GSGLKGLGAMQQQSVLF---GMPILRPLLGFTRPQLEDYAQKEKLNWITDESNGDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNKI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        NL D L  +  Q      +
Sbjct: 307 RRYQDSLYLTKPFSDLTKYCLKLEQNTL--------NLPDDLGNLTIQENEHNLI 353


>gi|145628768|ref|ZP_01784568.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21]
 gi|144979238|gb|EDJ88924.1| DNA mismatch repair protein [Haemophilus influenzae 22.1-21]
          Length = 397

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 147/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           LVA+SGG DS  LL     +   +     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LVALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  +  +  +  ++W  D SN D+R++R
Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPIFRPLLGFTRPQLEDYAQKEKLNWITDESNEDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRQYSLAKQTTLLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        +L D+L  +  Q      +
Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------SLPDNLGNLTVQENEHNLI 353


>gi|309750178|gb|ADO80162.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae R2866]
          Length = 430

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A+  V++  D+C +L+
Sbjct: 20  LIALSGGLDSTVLLSLFAKLCQKQPHLPPLSVRAIHIHHGLSPNAESWVQHCQDLCDQLQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  + ++  +  ++W  D SN D+R++R
Sbjct: 137 GSGLQGLGAMQQRSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +  I      I N   
Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E++T+        +L D L  +  Q      +
Sbjct: 307 RRYQDSLYLTKPFSDLTKYCLKLEKSTL--------SLPDDLGNLTVQENENNLI 353


>gi|145632651|ref|ZP_01788385.1| DNA mismatch repair protein [Haemophilus influenzae 3655]
 gi|144986846|gb|EDJ93398.1| DNA mismatch repair protein [Haemophilus influenzae 3655]
          Length = 430

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 89/355 (25%), Positives = 148/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   R     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG+G       +     + I RP L   R  +  +  +  ++W  D SN D+RF+R
Sbjct: 137 GSGLKGLGAMQQQSVLF---GMPIFRPLLGFTRPQLEDYAKKEKLNWITDESNEDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
            L F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LLQFRQYPPAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        NL D+L  +  Q      +
Sbjct: 307 RRYQDSLYLTKPFSDLTKYCLKLEQNTL--------NLPDNLGNLTVQENEHNLI 353


>gi|260582332|ref|ZP_05850125.1| DNA mismatch repair protein [Haemophilus influenzae NT127]
 gi|260094700|gb|EEW78595.1| DNA mismatch repair protein [Haemophilus influenzae NT127]
          Length = 430

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 148/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L + A +  ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSQNADNWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  +  +  Q  ++W  D SN D+RF+R
Sbjct: 137 GSGLQGLGAMQQQSVLF---GMQILRPLLGFTRPQLEDYAQQEKLNWITDESNKDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +  I      I N   
Sbjct: 194 NFLRNEI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--KNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        NL D L  +  Q      +
Sbjct: 307 RRYQDSLYLTKRFSDLTKCCLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353


>gi|157825192|ref|YP_001492912.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford]
 gi|166988063|sp|A8GLX9|TILS_RICAH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157799150|gb|ABV74404.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia akari str. Hartford]
          Length = 430

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 100/427 (23%), Positives = 181/427 (42%), Gaps = 40/427 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I VAVSGGSDS+ LL  L ++ ++++   I+ S ISVDH LRE +K E  YV ++ + 
Sbjct: 20  SKIAVAVSGGSDSVALLY-LANIWAEKN--NIELSVISVDHNLREQSKQETYYVQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   AR  RY L++      +  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERARAGRYDLMTNLCLEFDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRRFV--------RDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            R  +R+ +         +I L  L     L  K   +L   +  AV +    +  + + 
Sbjct: 193 RRNIIRQKLAKGAGYIKAEIILQQLKINDLLDNKFKPELISAIAEAVKIFEYGFAFLDLV 252

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
                S       + +   ++     I  GQ     + S+E ++  +        ++   
Sbjct: 253 KFDKFS-------NEVKVQIINFLLIIISGQFRAARFYSVEPILKLITQDVNFKNTLHGC 305

Query: 308 VIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366
           V+ R  N L I R   + LP   +  +++ +WD R+      ++   +   +Y   +   
Sbjct: 306 VVKRIQNELLIYREFGKKLPESKILLDKSIIWDNRFCITKNQENPDCVI--TYLSLEDYK 363

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVF 416
            I   +    L  +  K     L   P  + + K         +D  +   F +SF   F
Sbjct: 364 TIKKQLDLAHLKDLSCKNHNAILFTLPIIKILEKVIAIPHISYYDNDM-QNFEVSFAPNF 422

Query: 417 IPRLPFF 423
           + R   F
Sbjct: 423 VSRFTHF 429


>gi|319899362|ref|YP_004159459.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Bartonella
           clarridgeiae 73]
 gi|319403330|emb|CBI76889.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Bartonella
           clarridgeiae 73]
          Length = 481

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 122/462 (26%), Positives = 191/462 (41%), Gaps = 71/462 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +++AVSGGSDS+ LL  +   L        +   +++DH LRE +  E   V+ +C   
Sbjct: 20  KLILAVSGGSDSLALLFLVQEHLKILPIAP-EVIVVTIDHQLREESAHEAESVAKICHAY 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I H +V W+  KP+T +   AR ARY L+ + A+   ATLIMT HT +DQ ET  MR Q
Sbjct: 79  QIKHIIVRWEGKKPETKISEKARIARYDLLFKEAQKHGATLIMTGHTLNDQAETYQMRVQ 138

Query: 141 RD-------------------YAEKG----------------------MGLSGMCDTILY 159
           R                     +E G                       GLS +    L 
Sbjct: 139 RSQKKTEGAQSETLEKSLKERSSENGITEILKENDQEISIKKAEEGYERGLSCIPREALL 198

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
              + + RP L  RR+ +R++L  +  +W +DP+N D RFERVRVR F+R  +L  +  K
Sbjct: 199 HGQVRLIRPLLGVRRQTLRAYLSFQGSTWIDDPTNEDLRFERVRVRHFLRQKNLSEIAKK 258

Query: 220 MKKFQDLRVKVNNAVAMLI--PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277
           + K    R      VA LI        H R  I      L+      F ++ +   + GG
Sbjct: 259 VNKAALKRRMQAQKVADLILALDIAVEHGRCFIGKPPVFLHQHHAFPF-VVGLFVVLMGG 317

Query: 278 QISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335
              L   + +  +   L L+  ++   ++   VI+     + + R  R++   I+ P ET
Sbjct: 318 SSYLLSSQKLVALNQKLCLQEPEKKRFTLAGAVIETSKKGIAMWRETRHIQEAIIAPGET 377

Query: 336 TVWDGRYQFQNLSDSLIQIGP-----------QSYRKADVPSGI----------PPIIAQ 374
            VWD RYQ  N     I++ P           Q   + + P                +  
Sbjct: 378 FVWDRRYQISNYDTKAIRVRPADLTHLKNYLDQGKGEVETPHFPSLQSLVMISNEKGVDI 437

Query: 375 RALSSMPSKEGG---KPLLAPFSRFMTKFDLPVAYAFSISFG 413
             L+     +     K ++APF+  + + D  +A      F 
Sbjct: 438 PELTHHFCYQRNIIMKRIMAPFNWLLPREDAAIANVVGSFFN 479


>gi|145638685|ref|ZP_01794294.1| pyridoxine kinase [Haemophilus influenzae PittII]
 gi|145272280|gb|EDK12188.1| pyridoxine kinase [Haemophilus influenzae PittII]
          Length = 430

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 150/355 (42%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L + A    ++  D+C +L+
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSIRAIHIHHGLSQNADCWAKHCQDLCDQLQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  + ++  +  ++W  D SN D+R++R
Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +  I      I N   
Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        +L D+L  +  Q      +
Sbjct: 307 RRYQDSLYLTKRFSDLTKYCLKLEQNTL--------SLPDNLGNLTVQENEHNLI 353


>gi|329122279|ref|ZP_08250867.1| tRNA(Ile)-lysidine synthetase [Haemophilus aegyptius ATCC 11116]
 gi|327473840|gb|EGF19257.1| tRNA(Ile)-lysidine synthetase [Haemophilus aegyptius ATCC 11116]
          Length = 430

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 148/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   R     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKRPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  + ++  +  ++W  D SN D+RF+R
Sbjct: 137 GSGLQGLGAMQQRSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSETFAKHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        +L D L  +  Q   +  +
Sbjct: 307 RRYQDSLYLTKRFSDLTKYCLKLEQNTL--------SLPDDLGNLTVQENEQNLI 353


>gi|145630423|ref|ZP_01786204.1| pyridoxine kinase [Haemophilus influenzae R3021]
 gi|144984158|gb|EDJ91595.1| pyridoxine kinase [Haemophilus influenzae R3021]
          Length = 430

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 83/349 (23%), Positives = 148/349 (42%), Gaps = 34/349 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +   + +   AI + H L   A    ++  D+C +L+
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLQPLSIRAIHIHHGLSPNADSWAKHCQDLCDQLQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I ++ +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKYLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  + ++  +  ++W  D SN D+R++R
Sbjct: 137 GSGLQGLGAMQQRSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPELRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   +I
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKII 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358
            R  + L++T+   +L    L  E+ T+        +L D L  +  Q 
Sbjct: 307 RRYQDRLYLTKPFSDLTKYCLKLEQNTL--------SLPDDLGNLTVQE 347


>gi|68249007|ref|YP_248119.1| putative cell cycle protein MesJ [Haemophilus influenzae 86-028NP]
 gi|81336582|sp|Q4QND8|TILS_HAEI8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|68057206|gb|AAX87459.1| putative cell cycle protein MesJ [Haemophilus influenzae 86-028NP]
          Length = 430

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 142/346 (41%), Gaps = 34/346 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A    ++  ++C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLCQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQNLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +     +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQIQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+        +     + I RP L   R  +  +  Q  ++W  D SN D+R++R
Sbjct: 137 GSGLQGLSAMQQQSVLF---GMPIFRPLLGFTRPQLEDYAQQEKLNWVTDESNEDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +  I      I N   
Sbjct: 194 NFLRNEI----LPKLRERWAHF-DLAVQRSAQHCFEQQQLINDLLSEIFTEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
            L F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LLQFRQYSLAKQTALLRMWLA--KNQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
            R  + L++T+   +L    L  E+  +        NL D L  + 
Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNML--------NLPDDLGNLT 344


>gi|309972437|gb|ADO95638.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae R2846]
          Length = 430

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 149/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A+  V++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNAESWVQHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  + ++  +  ++W  D SN D+R++R
Sbjct: 137 GSGLQGLGAMQQRSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNEDNRYDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPELRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAKHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+  +        +L D+L  +  Q      +
Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNML--------SLPDNLGNLTVQENEHNLI 353


>gi|254488340|ref|ZP_05101545.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
 gi|214045209|gb|EEB85847.1| tRNA(Ile)-lysidine synthetase [Roseobacter sp. GAI101]
          Length = 419

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/424 (24%), Positives = 173/424 (40%), Gaps = 28/424 (6%)

Query: 6   IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           ++  R     L+   P  I VAVSGGSDS+ LL  LH      S         +VDH LR
Sbjct: 3   VDPARLLADGLLPDPPKTIGVAVSGGSDSLALLHLLHDFAVTHS---CTLHVATVDHGLR 59

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A  E   V+D C  L + H V+ W+       L   AR+ARY L+++  +     +I 
Sbjct: 60  REAGAEAAMVADTCRSLGLDHEVLHWQGWDRSGNLQNEARKARYQLLADWGRRRQLDVIA 119

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             HT DDQ ET  MR  R     G  LS M D    +   WI RP L  RR  ++++L  
Sbjct: 120 LGHTADDQAETFLMRLARRAGVDG--LSAMPDRFEREGMTWI-RPLLGARRAALQAYLES 176

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
             I W +DPSN D R++RVR+R  +       ++  AL +  +     +  +N+ +    
Sbjct: 177 NGIQWADDPSNEDTRYDRVRIRNALSILEGIGVEAEALSVVAQNMSAAKDALNHQMQQTA 236

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
             Y+++H  ++      +      +   L+  +     G    P   ++  VM  L +  
Sbjct: 237 RAYVSLHAGAVAIDVAGLNAQPFEIRRRLIAHALKWVNGAYYAPRSAALGDVMAALATA- 295

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD--------S 350
               ++    +  R   LW+ R +R +  +     +  +WDGR++    +         +
Sbjct: 296 -PSATLQGCELRHRVGKLWVFRELRVVSRMTCDIRD--LWDGRWRIAPPAQFSADTGDLT 352

Query: 351 LIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFS 409
           +  +G    +    P      + +  L S P+   G  L+ AP +     +   +     
Sbjct: 353 VGALGADGLK--LCPDWRDLGLPRGVLLSSPAVWQGARLVAAPLAGTSQNWQAVLERGKD 410

Query: 410 ISFG 413
             F 
Sbjct: 411 TFFA 414


>gi|319898074|ref|YP_004136271.1| tRNA(ile)-lysidine synthetase [Haemophilus influenzae F3031]
 gi|317433580|emb|CBY81964.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3031]
          Length = 430

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 145/355 (40%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +     +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQIQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  +  +  +  ++W  D SN D+RF+R
Sbjct: 137 GSGLQGLGAIQQQSELF---GMPIFRPLLGFTRPQLEDYAQKEKLNWITDESNKDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNKI----LPKLRERWAYF-DLSVQRSTQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        +L D L  +  Q      +
Sbjct: 307 RRYQDCLYLTKRFSDLTKCTLKLEQNTL--------SLPDDLGNLSVQENEHNLI 353


>gi|67458532|ref|YP_246156.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2]
 gi|75537001|sp|Q4UN67|TILS_RICFE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|67004065|gb|AAY60991.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia felis URRWXCal2]
          Length = 430

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 185/427 (43%), Gaps = 40/427 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I  AVSGGSDS+ LL  L ++ ++++   I+ S ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKIAAAVSGGSDSVALLY-LANIWAEKN--NIELSVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRRFV--------RDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            R  +R+ +         DI L  L     L  K   +L   +  AV +    +  + + 
Sbjct: 193 RRNIIRQKLAKGEDYIKADIILQQLKINDLLDNKFKPELISAIAEAVKIFEYGFAFLDLV 252

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
                S       + +   ++     I  GQ     + S+E ++  +        ++   
Sbjct: 253 KFDKFS-------NEVKVQIINFLLIIISGQFRAARFYSVEPILKLITQDVNFKNTLHGC 305

Query: 308 VIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366
           VI+R  N L I R   + LP   +  +++ +WD R++     ++       ++   +   
Sbjct: 306 VINRIQNELLIYREFGKKLPESKILLDKSVIWDNRFRITRNQETPNCF--VTHLSLEDYK 363

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVF 416
            I   +    L ++  K     +   P  + + K         +D  + + F +SF   F
Sbjct: 364 MIKKQLDLEPLKNLSCKNHNAIIFTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFAPNF 422

Query: 417 IPRLPFF 423
           + R   F
Sbjct: 423 VSRFTHF 429


>gi|49474667|ref|YP_032709.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse]
 gi|61216506|sp|Q6FYQ5|TILS_BARQU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49240171|emb|CAF26635.1| hypothetical protein BQ11760 [Bartonella quintana str. Toulouse]
          Length = 476

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 174/385 (45%), Gaps = 39/385 (10%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +    +++AVSGGSDS+ LL  +   L   S    +   ++VDH LR  +  E   V+
Sbjct: 14  DFIQCRKVILAVSGGSDSLALLFLVKDHLKTFSIPT-EIIVVTVDHQLRRESACEAESVA 72

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++C    I H +V W+  KP+T ++++AR  RY L+ + A+   ATLIMT HT +DQ+ET
Sbjct: 73  EICRAHHIQHVIVRWEGKKPKTHIISSARTVRYNLLFKEAQKQGATLIMTGHTLNDQVET 132

Query: 135 VYMRSQRDYAEK---------------------------------GMGLSGMCDTILYDL 161
             MR QR                                        GLS +    L + 
Sbjct: 133 YQMRCQRLQKSADVLQREAFEDMRDGVCSTETRANIAEKSYGLMYERGLSCIPREALLNQ 192

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
            + + RP L  +R+ +R++L  +  +W +DP+N +  FERVRVR+ +       +  K+ 
Sbjct: 193 TVRLIRPLLGVKRKTLRAYLRLKGKTWIDDPTNENPNFERVRVRQSLHPKKFAGIAQKVH 252

Query: 222 KFQDLRVKVNNAVAMLI--PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
           +    R K    VA LI        H R  IA     L   S   F +   +  + GG  
Sbjct: 253 EATLQRRKQAQNVANLILALDVSVEHGRCFIAKPVSFLQQHSGFPFVVGLFAVLMGGGFY 312

Query: 280 SLPGYRSMERVM--LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
            LP  + +  ++  L L S ++   ++   VI+   + L   R  RN+    + P +T +
Sbjct: 313 LLPT-KKLNTLVSKLCLHSLEKRRFTLAGSVIESNRSGLAFWRESRNIKEGAVEPGKTFL 371

Query: 338 WDGRYQFQNLSDSLIQIGPQSYRKA 362
           WDGRYQ  N  D  I++G    ++ 
Sbjct: 372 WDGRYQITNRGDETIKVGAAGLQQL 396


>gi|319775667|ref|YP_004138155.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3047]
 gi|317450258|emb|CBY86474.1| tRNA(Ile)-lysidine synthetase [Haemophilus influenzae F3047]
          Length = 433

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 146/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A    ++  ++C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSIRAIHIHHALSPNADCWAQHCQNLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +     +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQIQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  +  +  Q  ++W +D SN D+RF+R
Sbjct: 137 GSGLQGLGAMQHQSVLF---GMPIFRPLLGFTRLQLEDYAQQEKLNWVKDESNEDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPKLRERWAHF-DLAVQRSAQHCFEQQQLINDLLSETFAQHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVIFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        NL D L  +  Q      +
Sbjct: 307 RRYQDSLYLTKPFSDLTKCTLKLEQNTL--------NLPDDLGNLTVQENEHNLI 353


>gi|148825315|ref|YP_001290068.1| pyridoxine kinase [Haemophilus influenzae PittEE]
 gi|226695539|sp|A5UA84|TILS_HAEIE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|148715475|gb|ABQ97685.1| pyridoxine kinase [Haemophilus influenzae PittEE]
          Length = 430

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 140/328 (42%), Gaps = 26/328 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EILVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  + ++  +  ++W  D SN D+RF+R
Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPILRPLLGFTRTQLENYAQKEKLNWITDESNGDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTV 337
            R  + L++T+   +L    L  E+ T+
Sbjct: 307 RRYQDRLYLTKPFSDLTKYCLKLEQNTL 334


>gi|148827606|ref|YP_001292359.1| cell cycle protein [Haemophilus influenzae PittGG]
 gi|226695540|sp|A5UGS0|TILS_HAEIG RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|148718848|gb|ABQ99975.1| cell cycle protein [Haemophilus influenzae PittGG]
          Length = 430

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 140/328 (42%), Gaps = 26/328 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +   +I    AI + H L   A    ++  D+C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLCQKQPHLQILSLRAIHIHHGLSPNADSWAKHCQDLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  +  +  +  ++W  D SN D+RF+R
Sbjct: 137 GSGLQGLGAMQQQSVLF---GMQILRPLLGFTRPQLEDYAQKEKLNWITDESNKDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   +I
Sbjct: 249 LCQFRKYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKII 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTV 337
            R  + L++T+   +L    L  E+ T+
Sbjct: 307 RRYQDRLYLTKPFSDLTKYCLKLEQNTL 334


>gi|157827822|ref|YP_001496886.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389]
 gi|166988064|sp|A8GY99|TILS_RICB8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157803126|gb|ABV79849.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii OSU 85-389]
          Length = 430

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 180/424 (42%), Gaps = 34/424 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ + ++   I+   +SVDH LR+ +K E+ Y+ +  + 
Sbjct: 20  SKIAIAVSGGSDSVALLY-LANIWAKKN--NIELFVLSVDHNLRDQSKQEIEYIQNTAND 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +    + + +    + L   AR+ RY L++   + ++  +++TAH  DD +E   +R 
Sbjct: 77  LGLKFYSLFFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDDYIENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+  S    ++ +  N  I RP     + ++ ++L   NI W ED SN   ++
Sbjct: 137 ERKSGVFGLSSS----SVNWHNNTQIIRPLFNIPKSELVNYLATNNIKWFEDQSNLSTKY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R  +R+ +       +Y+K       ++KVN  +       L   +   + IS+     
Sbjct: 193 RRNTIRQKLAK---EEVYIKDDIITQ-QIKVNELIENKFKPELISAIAESVKISEYGFAF 248

Query: 260 DSTLLF---------YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
              + F          L+     I  GQ     + S+E ++  ++       ++   VI 
Sbjct: 249 LDLIKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLDFKNTLHGCVIK 308

Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
           R  N L I R   + LP   L  ++  VWD R++     D  I+    +Y   +    I 
Sbjct: 309 RMQNKLLIYREFGKKLPESKLLLDKQLVWDNRFRITKNHD--IENCVATYLSLEDYKIIK 366

Query: 370 PIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPR 419
             +    L ++        L   P  + + K         +D  +  +F++SF   F  R
Sbjct: 367 EKLDLEVLKNLSCGNHNAILFTLPIVKILEKVVAIPHISYYDNDI-KSFNVSFAPDFTSR 425

Query: 420 LPFF 423
              F
Sbjct: 426 FTHF 429


>gi|91206209|ref|YP_538564.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C]
 gi|122425129|sp|Q1RGN9|TILS_RICBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|91069753|gb|ABE05475.1| tRNA(Ile)-lysidine synthetase [Rickettsia bellii RML369-C]
          Length = 430

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/424 (22%), Positives = 180/424 (42%), Gaps = 34/424 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ + ++   I+   +SVDH LR+ +K E+ Y+ +  + 
Sbjct: 20  SKIAIAVSGGSDSVALLY-LANIWAKKN--NIELFVLSVDHNLRDQSKQEIEYIQNTAND 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +    + + +    + L   AR+ RY L++   + ++  +++TAH  DD +E   +R 
Sbjct: 77  LGLKFYSLFFDHQNNFSNLQERARKGRYDLMTSLCQKLDILVLLTAHHEDDYIENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+  S    ++ +  N  I RP     + ++ ++L   NI W ED SN   ++
Sbjct: 137 ERKSGVFGLSSS----SVNWHNNTQIIRPLFNIPKSELVNYLATNNIKWFEDQSNLSTKY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R  +R+ +       +Y+K       ++KVN  +       L   +   + IS+     
Sbjct: 193 RRNTIRQKLAK---EEVYIKDDIITQ-QIKVNELIENKFKPELISAIAESVKISEYGFAF 248

Query: 260 DSTLLF---------YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
              + F          L+     I  GQ     + S+E ++  ++       ++   VI 
Sbjct: 249 LDLIKFSGFSQEVRVQLINFLLIIISGQQRSARFYSVEPILKLIRQSLDFKNTLHGCVIK 308

Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
           R  N L I R   + LP   L  ++  VWD R++     +  I+    +Y   +    I 
Sbjct: 309 RMQNKLLIYREFGKKLPESKLLLDKQLVWDNRFRITK--NHNIENCVATYLSLEDYKIIK 366

Query: 370 PIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPR 419
             +    L ++        L   P  + + K         +D  +  +F++SF   F  R
Sbjct: 367 EKLDLEVLKNLSCGNHNAILFTLPIVKILEKVVAIPHISYYDNDI-KSFNVSFAPDFTSR 425

Query: 420 LPFF 423
              F
Sbjct: 426 FTHF 429


>gi|163758787|ref|ZP_02165874.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43]
 gi|162284077|gb|EDQ34361.1| hypothetical protein HPDFL43_15227 [Hoeflea phototrophica DFL-43]
          Length = 444

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 129/417 (30%), Positives = 193/417 (46%), Gaps = 12/417 (2%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F +++     + VAVSGGSDS+GLL+ +      RS    +  A++VDH LR  + DE R
Sbjct: 23  FSKTITDRRPLGVAVSGGSDSLGLLLGMA-----RSVPPKQLVALTVDHGLRSGSADEAR 77

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            V  +C RL + H  + WK  KP +GL A AREARY L+S+ A  +    I+T HT DDQ
Sbjct: 78  TVKRICRRLGVRHETLLWKGEKPVSGLQAKAREARYHLLSDAASRLGLAAILTGHTSDDQ 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ MR  R   +   GL G+    L+D   W+ RP L   R  IR +L    + W ED
Sbjct: 138 AETLTMRRTRGLRDDAPGLIGIPQASLFDGRSWVLRPLLGVDRASIRRYLAMAGVGWIED 197

Query: 192 PSNTDDRFERVRVRRFVRDIDL-HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           PSN D RFERVRVR+ +    +      +  +    RV++    A  + +   V      
Sbjct: 198 PSNLDVRFERVRVRKGLEAQAMVSKSSDEASRAIASRVRIALEAAAFVDQACGVQRDGTW 257

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVI 309
            ++ D        +   L     +CGG       R    +  F+   + G  +++GR +I
Sbjct: 258 RVALDGRGAGEVEI-AALEALIRVCGGAARPLDRRGKLALHGFVSGRQAGSALAVGRTLI 316

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS-DSLIQIGPQSYRKADVPSGI 368
            R      + R  R L  L++ P ++  WD R++  NL   S +++       A      
Sbjct: 317 KRDVAGFVLMRERRGLEELVIAPGQSGDWDRRFRITNLDRHSDLRVVADHTATAMPLFSR 376

Query: 369 PPIIAQRALSSMPSKEGG---KPLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLPF 422
                 R+ S      GG   K L+  FSR +  ++LP+A A +   G    P  P+
Sbjct: 377 DFKAGSRSWSPAGGICGGFLVKRLVGGFSRVLPVYELPLAQALARLTGGAAFPACPW 433


>gi|73667491|ref|YP_303507.1| cell cycle protein MesJ [Ehrlichia canis str. Jake]
 gi|72394632|gb|AAZ68909.1| cell cycle protein MesJ [Ehrlichia canis str. Jake]
          Length = 433

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 159/379 (41%), Gaps = 19/379 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            VAVSGG DSM LL       S +         ++V+H LR+ AK E  +V      L +
Sbjct: 20  AVAVSGGIDSMVLLHL-----SAQHRNHNTPIILTVNHGLRQEAKQEALFVFQHSQNLNL 74

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +++W    P++ + ++AR+ RY L+ +         +M AH  +DQ ET+ +R +R 
Sbjct: 75  KCHILNWHGKLPESNIQSSARQIRYGLLLQWCNENRINYLMVAHQKNDQAETIMIRLERG 134

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G  L+GM +   Y   + I RP L   R ++  +  Q NI W  DPSN + +++R 
Sbjct: 135 SGLDG--LAGMQE-CTYLNGICILRPLLSVSRTELLQYASQNNIPWINDPSNNNKKYKRT 191

Query: 203 RVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-I 256
             R  +   D        LY      +     + + V   I + L       I I  D  
Sbjct: 192 LYRNMLETTDNPEILINRLYTASTHIKRSLDCILHYVREAIDECLEFTNLGYINIKLDVF 251

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK--RGCVSIGRVVIDRRAN 314
           LN+   +   LL  S    G Q   P Y+ + ++   +++ +           ++  + N
Sbjct: 252 LNLPEEISLRLLTYSIMTIGQQKYKPRYKKINKIFYKIQNNELNSAQTLCSCKIVKNQNN 311

Query: 315 FLWITRAVRNLPTLIL--YPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPII 372
            + I R V  +  LI+      + +WD R++          +   S   +++P  +   +
Sbjct: 312 TISIIREVSTIKELIVNYPTNTSIIWDNRFKISIAHHDANSLIICSLNDSNIPDDLKK-L 370

Query: 373 AQRALSSMPSKEGGKPLLA 391
            + A+  +P  +    ++A
Sbjct: 371 NREAVRCLPVLKHQNKIVA 389


>gi|88657904|ref|YP_507881.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599361|gb|ABD44830.1| tRNA(Ile)-lysidine synthetase [Ehrlichia chaffeensis str. Arkansas]
          Length = 434

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 159/382 (41%), Gaps = 19/382 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +  +AVSGG DSM LL       +  +        ++V+H LR  A  E  +V      
Sbjct: 17  DNFAIAVSGGIDSMTLLHLSARYCNKNTP-----IVLTVNHGLRPEAAQEALFVFQHSQN 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +   +++W    P++ + ++AR  RY L+ +         +M AH  +DQ ET+ +R 
Sbjct: 72  LNLKCHILNWHGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQAETIMIRL 131

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G  L+GM +   Y   + I RP L   R ++  +  + NI+W  D SN + ++
Sbjct: 132 ERGSGLDG--LAGMQE-YTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNNNKKY 188

Query: 200 ERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           +R   R  +      ++ ++ LY   +  +     + + V +   + L       I I  
Sbjct: 189 KRTLYRNMLEITDNPEVLINRLYTASEHIKRSLNCILHYVRLATDQCLEFTNLGHINIKL 248

Query: 255 DI-LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVI-DR 311
           DI L +   +   LL  S    G Q   P Y  +  +   +K+ K     ++    I   
Sbjct: 249 DIFLTLPEEISIRLLTYSIMSIGQQKYKPRYSKLSNIFSKIKNNKHKIAQTLCGCKITTN 308

Query: 312 RANFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
             N + ITR V  +  L +      V  WD R++   ++ +   +   S     +P  + 
Sbjct: 309 HNNIISITREVSAIQELTINSATNIVIEWDNRFKISIVNSNADNVTVSSLNNNYIPEELK 368

Query: 370 PIIAQRALSSMPSKEGGKPLLA 391
             + + A+  +P  +    ++A
Sbjct: 369 K-LHREAVRCLPILKHKNKIVA 389


>gi|68171364|ref|ZP_00544759.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999214|gb|EAM85869.1| PP-loop [Ehrlichia chaffeensis str. Sapulpa]
          Length = 442

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 159/382 (41%), Gaps = 19/382 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +  +AVSGG DSM LL       +  +        ++V+H LR  A  E  +V      
Sbjct: 25  DNFAIAVSGGIDSMTLLHLSARYCNKNTP-----IVLTVNHGLRPEAAQEALFVFQHSQN 79

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +   +++W    P++ + ++AR  RY L+ +         +M AH  +DQ ET+ +R 
Sbjct: 80  LNLKCHILNWHGKLPESNIQSSARRIRYKLLLQWCNENRIKYLMVAHQKNDQAETIMIRL 139

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G  L+GM +   Y   + I RP L   R ++  +  + NI+W  D SN + ++
Sbjct: 140 ERGSGLDG--LAGMQE-YTYLNGICILRPLLSASRTELLQYANKNNITWINDTSNNNKKY 196

Query: 200 ERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           +R   R  +      ++ ++ LY   +  +     + + V +   + L       I I  
Sbjct: 197 KRTLYRNMLEITDNPEVLINRLYTASEHIKRSLNCILHYVRLATDQCLEFTNLGHINIKL 256

Query: 255 DI-LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVI-DR 311
           DI L +   +   LL  S    G Q   P Y  +  +   +K+ K     ++    I   
Sbjct: 257 DIFLTLPEEISIRLLTYSIMSIGQQKYKPRYSKLSNIFSKIKNNKHKIAQTLCGCKITTN 316

Query: 312 RANFLWITRAVRNLPTLILYPEETTV--WDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
             N + ITR V  +  L +      V  WD R++   ++ +   +   S     +P  + 
Sbjct: 317 HNNIISITREVSAIQELTINSATNIVIEWDNRFKISIVNSNADNVTVSSLNNNYIPEELK 376

Query: 370 PIIAQRALSSMPSKEGGKPLLA 391
             + + A+  +P  +    ++A
Sbjct: 377 K-LHREAVRCLPILKHKNKIVA 397


>gi|84501655|ref|ZP_00999827.1| PP-loop family protein [Oceanicola batsensis HTCC2597]
 gi|84390276|gb|EAQ02835.1| PP-loop family protein [Oceanicola batsensis HTCC2597]
          Length = 414

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 102/413 (24%), Positives = 168/413 (40%), Gaps = 22/413 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M   P  +V  F         + VAVSGGSDS+ LL  LH   S      +   A++VDH
Sbjct: 1   MSGDPARAVAGFFDP-PPAGPLGVAVSGGSDSLALLHLLHDWASG---SGLALHAVTVDH 56

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V ++  RL + H+V+ W        L   AR ARY L++E A+     
Sbjct: 57  GLRADSAAEAACVGEIAGRLGVPHTVLHWTGWDGAGNLSDRARRARYDLMAEWARGAGVA 116

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I   HT DDQ ET+ MR  R     G+              +   RP L  RR ++R +
Sbjct: 117 GIALGHTADDQAETLLMRLARGSGVAGLAAM---SPGRSHAGVTFLRPLLTVRRAELRRY 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVA 235
           L  R+  W EDP+N D RF+R + RR +R+++     + AL +       LR  + +   
Sbjct: 174 LDARDQKWIEDPTNEDMRFDRPKARRALRELEPLGLTVEALNMVAGNMAALRKTLGHYAE 233

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
                ++      ++        +       +L+ +     G+   P    ++R++  + 
Sbjct: 234 AEARAHVQFEAGDVLIPCAAFGAMPGETARLILQAALHWVSGEEYPPRRGGIQRLVEAIA 293

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN---LSDSLI 352
            G+   + +   +I  R + + I+R    +   +  P   T+WDGR++        D + 
Sbjct: 294 RGEG--MPLSGCLIAIRDDTIRISREPAAVAETVAAPG--TLWDGRWRLTGPFRPGDRIA 349

Query: 353 QIGPQSYRKADVPSGIPPIIAQRALSSMPSKE-GGKPLLAPFSRFMTKFDLPV 404
             G    R           + +R L + P+    G    AP + F   F   +
Sbjct: 350 ATGEAGLRACT--EWRGTGLPRRTLLAAPAVWRDGALRAAPLAGFGAGFSAEL 400


>gi|319406243|emb|CBI79880.1| tRNA(Ile)-lysidine synthase [Bartonella sp. AR 15-3]
          Length = 485

 Score =  276 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 166/386 (43%), Gaps = 51/386 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +++ VSGGSDS+ LL  +   L        +   +++DH LRE +  E   V+ +C   
Sbjct: 20  KLILGVSGGSDSLALLFLVKEHLKTLPIAP-EVIVVTIDHQLREESAYEAENVAKICYAF 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I H +V W+  KPQT +   AR ARY L+ + A+   ATLIMT HT +DQ ET  MR Q
Sbjct: 79  QIKHIIVRWEGKKPQTKISEKARIARYDLLFKEAQKQGATLIMTGHTLNDQAETYQMRVQ 138

Query: 141 RDYAEKGM---------------------------------------------GLSGMCD 155
           R   +                                                GLS M  
Sbjct: 139 RSQKKTEAARHETSEMPWKDREKDKAPANEEMEISKENSHKRLVQKDEERYERGLSCMPR 198

Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
             L    + + RP L  RR+ +R++L  R  +W +DP+N D +FERVRVR F+    L  
Sbjct: 199 EALLYGKVRLIRPLLGVRRKTLRAYLSLRGSTWIDDPTNEDLKFERVRVRHFLHQKKLTE 258

Query: 216 LYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSAA 273
           +  K+ K     RV+      +++   +TV +    I      L       F ++ +   
Sbjct: 259 IAQKVHKATVQRRVQAQKVADLILALDITVEYGHCFIGKPPSFLQQHHAFPF-VVGLFIV 317

Query: 274 ICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY 331
           + GG   L   + +  +   L L   ++   ++   VI+     L I R  R++    + 
Sbjct: 318 LMGGSSYLLSSQKLAALDQKLCLHDLEKKRFTLAGAVIEYSRKGLAIWREARHIQKATIA 377

Query: 332 PEETTVWDGRYQFQNLSDSLIQIGPQ 357
           P ET +WD RYQ  N   + I +GP 
Sbjct: 378 PGETFIWDQRYQIINHDTTAICVGPA 403


>gi|229846491|ref|ZP_04466599.1| cell cycle protein [Haemophilus influenzae 7P49H1]
 gi|229810584|gb|EEP46302.1| cell cycle protein [Haemophilus influenzae 7P49H1]
          Length = 430

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 147/355 (41%), Gaps = 34/355 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +     +   AI + H L   A   V++  ++C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHALSPNADCWVQHCQNLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-ANGIEAGAREARYQAIKKHLQTQ--EMLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  +  +  Q  ++W  D SN D+RF+R
Sbjct: 137 GSGLQGLGAMQQQSVLF---GMQILRPLLGFTRPQLEDYAQQEKLNWVTDESNEDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPKLRERWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248

Query: 262 TLLFY---------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
              F          LLR+  A    Q+ +P  R + +++   +F K        +   VI
Sbjct: 249 LYQFRQYSLAKQTALLRMWLA--ENQLEMPSKRQLTQLINDVVFAKEEANPQFQLVNKVI 306

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            R  + L++T+   +L    L  E+ T+        +L D L  +  Q      +
Sbjct: 307 RRYQDCLYLTKRFSDLTKCTLKLEQNTL--------SLPDDLGNLTIQENEHNLI 353


>gi|57239569|ref|YP_180705.1| hypothetical protein Erum8420 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579557|ref|YP_197769.1| hypothetical protein ERWE_CDS_08930 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161648|emb|CAH58577.1| conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418183|emb|CAI27387.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 442

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 21/387 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            +AVSGG DSM LL  L ++ + +    I    ++V+H LR  A  E  +V      L +
Sbjct: 27  AIAVSGGIDSMVLLH-LSAICNTKFTPTI----LTVNHGLRSEAAQEALFVYQHSQNLNL 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +++W   KPQ+ + ++AR+ RY+L+ +         +M AH  +DQ ET+ MR +R 
Sbjct: 82  KCHILNWHGEKPQSNIQSSARQIRYSLLLQWCNQNQINYLMVAHQKNDQAETIMMRLERG 141

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G  L+GM +   Y   + I RP L   RE++  +   +NI+W  D SN + +++R 
Sbjct: 142 SGLDG--LAGMQE-CTYLNGICILRPLLAISREELIHYADTKNITWVHDISNDNKKYKRT 198

Query: 203 RVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-I 256
             R  ++++D     ++ LY      +     + + V + I ++L  +    I I  +  
Sbjct: 199 LYRNILKEVDNTEELVNRLYKTSVHIKRSLDCILHYVRLAIDEHLEFNNLGFIKIKLNTF 258

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK-SGKRGCVSIGRVVIDRRA-- 313
            N+   +   L   S    G +   P Y  +  +   ++ +      +     I R    
Sbjct: 259 FNLPEEISLRLFTYSIMSIGQKKYKPRYHKLNNMFRKIQNNDFTKPQTFCHCKITRNQKD 318

Query: 314 NFLWITRAVRNLPTLILYP--EETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371
           N L ITR V  +    + P  + + VWD R++ +  + +   I   S     +P  +   
Sbjct: 319 NTLCITREVSVINNKTISPYSKTSIVWDNRFKIRISNPNTHSITVSSLNNNYIPENLKK- 377

Query: 372 IAQRALSSMPSKEGGKPLLA-PFSRFM 397
           + + A+  +P  +    +LA P    +
Sbjct: 378 LDREAVRCLPILKYQNKILAYPLQNHL 404


>gi|32034944|ref|ZP_00135035.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209005|ref|YP_001054230.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae L20]
 gi|303250988|ref|ZP_07337176.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253197|ref|ZP_07535073.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|226695530|sp|A3N2I9|TILS_ACTP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|126097797|gb|ABN74625.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302650145|gb|EFL80313.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859341|gb|EFM91378.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 419

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 95/421 (22%), Positives = 174/421 (41%), Gaps = 39/421 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  +++   F        + ++ +SGG DS+        +L   +  ++   A+ + H
Sbjct: 1   MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A +   +   VC RL+I   +      + + G+ A AR ARY  I E  +     
Sbjct: 52  GLSPNADNWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQ ET  +  +R    KG+        + +  N  I RP L   +  I  +
Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237
            LQ+  +W ED SN D  ++R  +R  V    L  +  + + F  +  +     A   ML
Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291
           + + L   ++     S+  LNI++   F       L+R+    CG Q  +P    + +++
Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279

Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344
              ++    K   + +    + R  + L++T  +   P     P    +  T+ DG  + 
Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338

Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403
           Q+L DS+I        +  +P  +     Q  L+     K+ GKP+     +   +  +P
Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKALVNAPLQVKLTHQGKVKQYGKPMREEMKKRYQQAQVP 398

Query: 404 V 404
           V
Sbjct: 399 V 399


>gi|58617611|ref|YP_196810.1| hypothetical protein ERGA_CDS_08840 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417223|emb|CAI28336.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 442

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 21/387 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            +AVSGG DSM LL  L ++ + +    I    ++V+H LR  A  E  +V      L +
Sbjct: 27  AIAVSGGIDSMVLLH-LSAICNTKFTPTI----LTVNHGLRSEAAQEALFVYQHSQNLNL 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +++W   KPQ+ + ++AR+ RY+L+ +         +M AH  +DQ ET+ MR +R 
Sbjct: 82  KCHILNWHGEKPQSNIQSSARQIRYSLLLQWCNQNQVNYLMVAHQKNDQAETIMMRLERG 141

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G  L+GM +   Y   + I RP L   RE++  +   +NI+W  D SN + +++R 
Sbjct: 142 SGLDG--LAGMQE-CTYLNGICILRPLLAISREELIHYADTKNITWVHDISNDNKKYKRT 198

Query: 203 RVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-I 256
             R  ++++D     ++ LY      +     + + V + I ++L  +    I I  +  
Sbjct: 199 LYRNILKEVDNTEELVNRLYKTSVHIKRSLDCILHYVRLAIDEHLEFNNLGFIKIKLNTF 258

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK-SGKRGCVSIGRVVIDRRA-- 313
            N+   +   L   S    G +   P Y  +  +   ++ +      +     I R    
Sbjct: 259 FNLPEEISLRLFTYSIMSIGQKKYKPRYHKLNNMFRKIQNNDFTKPQTFCHCKITRNQKD 318

Query: 314 NFLWITRAVRNLPTLILYP--EETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371
           N L ITR V  +    + P  + + VWD R++ +  + +   I   S     +P  +   
Sbjct: 319 NTLCITREVSVINNKTISPYSKTSIVWDNRFKIRISNPNTHSITVSSLNNNYIPENLKK- 377

Query: 372 IAQRALSSMPSKEGGKPLLA-PFSRFM 397
           + + A+  +P  +    +LA P    +
Sbjct: 378 LDREAVRCLPILKYQNKILAYPLQNHL 404


>gi|307246460|ref|ZP_07528533.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255443|ref|ZP_07537250.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259895|ref|ZP_07541609.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852664|gb|EFM84896.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861627|gb|EFM93614.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866065|gb|EFM97939.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 419

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/421 (22%), Positives = 173/421 (41%), Gaps = 39/421 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  +++   F        + ++ +SGG DS+        +L   +  ++   A+ + H
Sbjct: 1   MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A     +   VC RL+I   +      + + G+ A AR ARY  I E  +     
Sbjct: 52  GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQ ET  +  +R    KG+        + +  N  I RP L   +  I  +
Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237
            LQ+  +W ED SN D  ++R  +R  V    L  +  + + F  +  +     A   ML
Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291
           + + L   ++     S+  LNI++   F       L+R+    CG Q  +P    + +++
Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279

Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344
              ++    K   + +    + R  + L++T  +   P     P    +  T+ DG  + 
Sbjct: 280 QQTIYTDVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338

Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403
           Q+L DS+I        +  +P  +     Q  L+     K+ GKP+     +   +  +P
Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKALVNAPLQVKLTHQGKVKQYGKPMREEMKKRYQQAQVP 398

Query: 404 V 404
           V
Sbjct: 399 V 399


>gi|307257612|ref|ZP_07539372.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863915|gb|EFM95838.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 419

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 174/421 (41%), Gaps = 39/421 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  +++   F        + ++ +SGG DS+        +L   +  ++   A+ + H
Sbjct: 1   MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A +   +   VC RL+I   +      + + G+ A AR ARY  I E  ++    
Sbjct: 52  GLSPNADNWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQSN--E 108

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQ ET  +  +R    KG+        + +  N  I RP L   +  I  +
Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237
            LQ+  +W ED SN D  ++R  +R  V    L  +  + + F  +  +     A   ML
Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291
           + + L   ++     S+  LNI++   F       L+R+    CG Q  +P    + +++
Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279

Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344
              ++    K   + +    + R  + L++T  +   P     P    +   + DG  + 
Sbjct: 280 QQTIYTDVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLALPDGIGEL 338

Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403
           Q+L DS+I        +  +P  +     Q  L+     K+ GKP+     +   +  +P
Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPEALVNAPLQVKLAHQGKVKQYGKPMREEMKKRYQQAQVP 398

Query: 404 V 404
           V
Sbjct: 399 V 399


>gi|254510246|ref|ZP_05122313.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11]
 gi|221533957|gb|EEE36945.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium KLH11]
          Length = 417

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/410 (23%), Positives = 165/410 (40%), Gaps = 20/410 (4%)

Query: 7   ESVRFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +++R  +R+ +    P  + VAVSGGSDS  L+  L  +       +I   A +VDH LR
Sbjct: 6   DTLRAEIRARLPDPLPRRLGVAVSGGSDSTALMRLLADIAQR---EQIALFAATVDHGLR 62

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A  E   V+++     I H  + W+       L   AR ARY L++  A+      I 
Sbjct: 63  ADAASEAATVANLAHNWGIPHETLKWRGWDGTGNLQDHARRARYRLLTGWAQANGLGAIA 122

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             HT DDQ ET+ MR  R       GLS M         L + RP L   R  +R +L  
Sbjct: 123 LGHTADDQAETLLMRLARAAGV--SGLSAMAGMRREGETL-LLRPMLAVTRARLRDYLTA 179

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDL-----HALYLKMKKFQDLRVKVNNAVAMLI 238
           + I+W +DPSN D RF+R++ R+ +  +        +L    +     R  +        
Sbjct: 180 QGIAWIDDPSNQDLRFDRIKTRQALSGLTQIGITAESLSRVAENLAQAREALAQYAQESA 239

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
              + V    +    +    +   +   L+  +     G    P + ++++ +  L +G+
Sbjct: 240 AGVMRVMDGDLCVDPEGFAALPEEIRRRLVVAAILWVAGGAYPPRHGAVDQALNALSAGQ 299

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358
              +++G  ++  R    WI+R +  +      P E   WDGR+     +    +I    
Sbjct: 300 --RMTVGGCILSFRGKKTWISRELNAVSHKTANPGEP--WDGRWIVTGPTGPDAEIRALG 355

Query: 359 YRKADVPSGIPPII-AQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAY 406
                       +   + AL S P+   G  LL AP + F   +   +  
Sbjct: 356 DAGILQLEDWRSVAKPRTALLSTPAVWAGDTLLAAPLAGFAQGWRAEMVS 405


>gi|307250818|ref|ZP_07532747.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857177|gb|EFM89304.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 419

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 94/420 (22%), Positives = 172/420 (40%), Gaps = 39/420 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  +++   F        + ++ +SGG DS+        +L   +  ++   A+ + H
Sbjct: 1   MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A     +   VC RL+I   +      + + G+ A AR ARY  I E  +     
Sbjct: 52  GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQ ET  +  +R    KG+        + +  N  I RP L   +  I  +
Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237
            LQ+  +W ED SN D  ++R  +R  V    L  +  + + F  +  +     A   ML
Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291
           + + L   ++     S+  LNI++   F       L+R+    CG Q  +P    + +++
Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279

Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344
              ++    K   + +    + R  + L++T  +   P     P    +  T+ DG  + 
Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338

Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403
           Q+L DS+I        +  +P  +     Q  L+     K+ GKP+     +   +  +P
Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPEALVNAPLQVKLAHQGKVKQYGKPMREEMKKRYQQAQVP 398


>gi|42521051|ref|NP_966966.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|61217299|sp|Q73FR9|TILS_WOLPM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|42410792|gb|AAS14900.1| cell cycle protein MesJ, putative [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 431

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 147/389 (37%), Gaps = 17/389 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S  Y   + VAVSGG DS+ LL  + +             A++V+H LR  ++ E  +V 
Sbjct: 14  SAFYNNQVAVAVSGGVDSIVLLHLMTNWAKKNKLSLP--IALTVNHGLRPESQKEADFVV 71

Query: 75  DVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                L      +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ E
Sbjct: 72  SYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAE 131

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +R +R     G+      D   +   + I RP L   R +I  +     + W ED S
Sbjct: 132 TFLLRLERGSGVDGLSSM---DYKSFLNGIDIFRPLLNFSRSEIEKYAKLHRLKWIEDRS 188

Query: 194 NTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           N D ++ R   R  ++  D   +      L     +     + +   +     + VH   
Sbjct: 189 NHDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLG 248

Query: 249 IIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-LFLKSGKRGCVSIGR 306
            I I   +   +   +   LL  S      +   P Y S+  +    L+       ++  
Sbjct: 249 YIEIKLSEFYQLPEEIALRLLLYSIMAIASKHYKPRYSSLIAIFNRILQKDSNVNCTLSG 308

Query: 307 VVIDRRANFLWITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-AD 363
             I +    + I R    +  +   L   E T WD R+    L +    +     +K   
Sbjct: 309 CKIRKYGENILIIRESSRIQEITVNLPLNEPTQWDNRFSCTILGNQGCSVIIAPLKKTQK 368

Query: 364 VPSGIPPIIAQRAL-SSMPSKEGGKPLLA 391
           VP  +        +  S+P+ +    +LA
Sbjct: 369 VPEFLKDYNCCPEVFYSLPTVQKDSKVLA 397


>gi|307248585|ref|ZP_07530600.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306854935|gb|EFM87123.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 413

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 172/421 (40%), Gaps = 39/421 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  +++   F        + ++ +SGG DS+        +L   +  ++   A+ + H
Sbjct: 1   MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A     +   VC RL+I   +      + + G+ A AR ARY  I E  +     
Sbjct: 52  GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQ ET  +  +R    KG+        + +  N  I RP L   +  I  +
Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237
            LQ+  +W ED SN D  ++R  +R  V    L  +  + + F  +  +     A   ML
Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291
           + + L   ++     S+  LNI++   F       L+R+    CG Q  +P    + +++
Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279

Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344
              ++    K   + +    + R  + L++T  +   P     P    +  T+ DG  + 
Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338

Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403
           Q+L DS+I        +  +P  +     Q  L+     K+  KP+     +   +  +P
Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKVLVNAPLQVKLTHQGKVKQYAKPMREEMKKRYQQAQVP 398

Query: 404 V 404
           V
Sbjct: 399 V 399


>gi|331661562|ref|ZP_08362486.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA143]
 gi|331061477|gb|EGI33440.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA143]
          Length = 432

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 151/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRAEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L C R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLACTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVS------WQTWLQPLELPAGLGSVQLIAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|74310809|ref|YP_309228.1| tRNA(Ile)-lysidine synthetase [Shigella sonnei Ss046]
 gi|73854286|gb|AAZ86993.1| cell cycle protein [Shigella sonnei Ss046]
          Length = 432

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+  
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|26246135|ref|NP_752174.1| tRNA(Ile)-lysidine synthetase [Escherichia coli CFT073]
 gi|227884899|ref|ZP_04002704.1| PP-loop superfamily ATPase [Escherichia coli 83972]
 gi|300993591|ref|ZP_07180447.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 45-1]
 gi|301049898|ref|ZP_07196824.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 185-1]
 gi|61216659|sp|Q8FL00|TILS_ECOL6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|26106532|gb|AAN78718.1|AE016755_218 Putative cell cycle protein mesJ [Escherichia coli CFT073]
 gi|227838037|gb|EEJ48503.1| PP-loop superfamily ATPase [Escherichia coli 83972]
 gi|300298351|gb|EFJ54736.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 185-1]
 gi|300406514|gb|EFJ90052.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 45-1]
 gi|307552038|gb|ADN44813.1| tRNA(Ile)-lysidine synthase [Escherichia coli ABU 83972]
          Length = 437

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      IL       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETILP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|165976971|ref|YP_001652564.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|190150871|ref|YP_001969396.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307264222|ref|ZP_07545813.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|226695531|sp|B3GYM3|TILS_ACTP7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695532|sp|B0BRD5|TILS_ACTPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|165877072|gb|ABY70120.1| probable cell-cycle protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189916002|gb|ACE62254.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306870468|gb|EFN02221.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 419

 Score =  272 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 173/421 (41%), Gaps = 39/421 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  +++   F        + ++ +SGG DS+        +L   +  ++   A+ + H
Sbjct: 1   MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A +   +   VC RL+I   +      + + G+ A AR ARY  I E  +     
Sbjct: 52  GLSPNADNWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQ ET  +  +R    KG+        + +  N  I RP L   +  I  +
Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237
            LQ+  +W ED SN D  ++R  +R  V    L  +  + + F  +  +     A   ML
Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291
           + + L   ++     S+  LNI++   F       L+R+    CG Q  +P    + +++
Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279

Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344
              ++    K   + +    + R  + L++T  +   P     P    +  T+ DG  + 
Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338

Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403
           Q+L DS+I        +  +P  +     Q  L+     K+  KP+     +   +  +P
Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKVLVNAPLQVKLTHQGKVKQYAKPMREEMKKRYQQAQVP 398

Query: 404 V 404
           V
Sbjct: 399 V 399


>gi|315294592|gb|EFU53939.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 153-1]
          Length = 437

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 151/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      IL       W    Q   L   + ++   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETILP------WQTWLQPLELPAGVGRVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|157803229|ref|YP_001491778.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
           McKiel]
 gi|157784492|gb|ABV72993.1| tRNA(Ile)-lysidine synthetase TilS [Rickettsia canadensis str.
           McKiel]
          Length = 432

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 175/427 (40%), Gaps = 40/427 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I VAVSGGSDS+ LL   +          I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 22  SRIAVAVSGGSDSVALLYLTNVWAKK---NNIELFVISVDHNLREQSKQETHYIQNISNS 78

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++   ++TAH  DD +E   +R 
Sbjct: 79  LNRKHYNLSFDHQNNFSNLQERAREGRYNLMTNLCLELDILALLTAHHEDDYVENFCLRL 138

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L+  NI W ED SN  D++
Sbjct: 139 ERNSGIFGLSSSNIN----WHNNIQIIRPLYNIPKSELVEYLVNHNIKWFEDESNLSDKY 194

Query: 200 ERVRVRRFV--------RDIDLHALYLKM----KKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +R  VR+ +         DI L  L +      K   +L   +  AV +    +  + + 
Sbjct: 195 KRNLVRQKLAKEEDYIKADIILQQLKINNLLDDKFKPELISAIAEAVKIFEYGFAFLDLV 254

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
                S       + +   L+     I  GQ  +  + S+  ++  +        ++   
Sbjct: 255 KFDKFS-------NEVKVQLINFLLIIISGQSRVARFYSVSPILELITQDINFKNTLHGC 307

Query: 308 VIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366
           VI R  N L I R   + LP   +  +++ +WD R+      ++       ++   +   
Sbjct: 308 VIKRIQNELLIYREFGKKLPKSQILLDKSIIWDSRFHIIKNQETPNCF--VTHLSLEDYK 365

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVF 416
            I   +    L ++  K     L   P  + + K         +D  +   F +SF   F
Sbjct: 366 TIKKQLDLEPLKNLSCKNHNAILFTLPVVKILEKVIAIPHISYYDHDM-RNFGVSFAPNF 424

Query: 417 IPRLPFF 423
           + R   F
Sbjct: 425 VSRFTHF 431


>gi|303253037|ref|ZP_07339189.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307262025|ref|ZP_07543680.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|302648101|gb|EFL78305.1| cell-cycle protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306868308|gb|EFN00130.1| tRNA(Ile)-lysidine synthase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 419

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 94/421 (22%), Positives = 172/421 (40%), Gaps = 39/421 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  +++   F        + ++ +SGG DS+        +L   +  ++   A+ + H
Sbjct: 1   MLLDTLQT--QFRHYFPTQRNFVLGLSGGIDSIV-------LLHLLAELQLNLRAVHIHH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A     +   VC RL+I   +      + + G+ A AR ARY  I E  +     
Sbjct: 52  GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARAARYQAIGEIIQPN--E 108

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQ ET  +  +R    KG+        + +  N  I RP L   +  I  +
Sbjct: 109 VLVTAHHLDDQTETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKAQIEQY 165

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237
            LQ+  +W ED SN D  ++R  +R  V    L  +  + + F  +  +     A   ML
Sbjct: 166 ALQQQFTWIEDESNHDSHYDRNFLRNEV----LPIVNQRWQHFSQMVARSAQHCAEQQML 221

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291
           + + L   ++     S+  LNI++   F       L+R+    CG Q  +P    + +++
Sbjct: 222 LEELLAQELQRYADFSEKRLNIEAFPQFSLAKQQQLIRLWLEKCGAQ--MPSTAQLMQII 279

Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYP----EETTVWDGRYQF 344
              ++    K   + +    + R  + L++T  +   P     P    +  T+ DG  + 
Sbjct: 280 QQTIYADVDKNPQLKLADFWLRRYQHHLYLTGELLE-PDDFCQPLFAQQSLTLPDGIGEL 338

Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLP 403
           Q+L DS+I        +  +P  +     Q  L+     K+  KP+     +   +  +P
Sbjct: 339 QHLGDSIIYQKSGKIDRLLLPKVLVNAPLQVKLTHQGKVKQYAKPMREEMKKRYQQAQVP 398

Query: 404 V 404
           V
Sbjct: 399 V 399


>gi|218703442|ref|YP_002410961.1| tRNA (Ile)-lysidine synthetase [Escherichia coli UMN026]
 gi|293403257|ref|ZP_06647354.1| tilS [Escherichia coli FVEC1412]
 gi|298378793|ref|ZP_06988677.1| tilS [Escherichia coli FVEC1302]
 gi|300900770|ref|ZP_07118916.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 198-1]
 gi|218430539|emb|CAR11405.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UMN026]
 gi|284919963|emb|CBG33018.1| tRNA(Ile)-lysidine synthase [Escherichia coli 042]
 gi|291430172|gb|EFF03186.1| tilS [Escherichia coli FVEC1412]
 gi|298281127|gb|EFI22628.1| tilS [Escherichia coli FVEC1302]
 gi|300355755|gb|EFJ71625.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 198-1]
          Length = 431

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 148/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRAEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEF---AGTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    I    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDIAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGKNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|324008219|gb|EGB77438.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 57-2]
          Length = 432

 Score =  272 bits (696), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTPLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|301025926|ref|ZP_07189412.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 69-1]
 gi|300395781|gb|EFJ79319.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 69-1]
          Length = 432

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F D   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFADATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|319407718|emb|CBI81366.1| tRNA(Ile)-lysidine synthase [Bartonella sp. 1-1C]
          Length = 487

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 105/402 (26%), Positives = 166/402 (41%), Gaps = 51/402 (12%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +    F      +   +++ VSGG DS+ LL  +   L        +   +++DH LRE
Sbjct: 4   KLAKNLFKKTDFAHCQKLILGVSGGGDSLALLFLVKEHLKTMPLAP-EVIVVTIDHQLRE 62

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +  E   V+ +C  L+I H +V W+  KP+T +   AR ARY L+ + A+   A LIMT
Sbjct: 63  ESAYEAESVAKICHALQIKHIIVRWEGKKPKTQISEKARIARYDLLFKEAQKQGAALIMT 122

Query: 125 AHTFDDQLETVYMRSQRDYA---------------------------------------- 144
            HT +DQ ET  MR QR                                           
Sbjct: 123 GHTLNDQAETYQMRVQRSQKKTDSAQQEIPEALSKERRQERESANEEMQILKEESQKRST 182

Query: 145 -----EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                    GLS M    L    + + RP L  RR+ +R++L  +   W +DP+N D +F
Sbjct: 183 EKDEERYERGLSCMPREALLYGKVRLIRPLLGVRRKTLRAYLFLQGSKWIDDPTNEDLKF 242

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDIL 257
           ERVRVR  +    L  +  K+ K     RV+      +++   +TV + R  I      L
Sbjct: 243 ERVRVRHVLPQKKLTEIAQKVHKAALQRRVQAQKVADLILALDITVEYGRCFIGKPPSFL 302

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANF 315
                  F ++ +   + GG   L   + +  +   L L   ++   ++   VI+     
Sbjct: 303 QKHHAFSF-VIGLFIVLMGGSSYLLSSQKLAVLDQKLSLHDPEKKRFTLAGAVIEYSRKG 361

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           + I R  R++   ++ P ET +WD RYQ  N     I +GP 
Sbjct: 362 IAIWREARHIQKAMIAPGETCIWDQRYQITNHDTLDICVGPA 403


>gi|30061745|ref|NP_835916.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 2457T]
 gi|30039987|gb|AAP15721.1| cell cycle protein [Shigella flexneri 2a str. 2457T]
 gi|281599543|gb|ADA72527.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 2002017]
 gi|332762035|gb|EGJ92306.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 2747-71]
 gi|332762192|gb|EGJ92461.1| tRNA(Ile)-lysidine synthase [Shigella flexneri 4343-70]
 gi|332765037|gb|EGJ95265.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-671]
 gi|332768691|gb|EGJ98871.1| hypothetical protein SF293071_0275 [Shigella flexneri 2930-71]
 gi|333009368|gb|EGK28824.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-218]
 gi|333022234|gb|EGK41473.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-304]
          Length = 432

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 151/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSATLCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+      +W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIV------LWQTWLQPLELPAGLGTVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|322515650|ref|ZP_08068628.1| tRNA(Ile)-lysidine synthetase [Actinobacillus ureae ATCC 25976]
 gi|322118301|gb|EFX90584.1| tRNA(Ile)-lysidine synthetase [Actinobacillus ureae ATCC 25976]
          Length = 419

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/420 (23%), Positives = 172/420 (40%), Gaps = 37/420 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  +++   F          ++ +SGG DS+        +L   +  K+   A+ + H
Sbjct: 1   MLLDTLQT--QFRHYFPTQRDFVLGLSGGIDSIV-------LLHLLAELKLNLRAVHIHH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A     +   VC RL+I   +      + + G+ A AR ARY  I E    +   
Sbjct: 52  GLSPNADSWAAFCEQVCKRLKIPFILQKVTVDRSE-GIEAGARTARYQAIGEII--LPNE 108

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQ ET  +  +R    KG+        + +  N  I RP L   +  I  +
Sbjct: 109 VLVTAHHLDDQAETFLLALKRGSGIKGLSAM---QAVGFWQNFTIFRPLLNVSKTQIEQY 165

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237
            LQ+ ++W ED SN D  +ER  +R  V    L  +  + + F  +  +     A   ML
Sbjct: 166 ALQQQLTWIEDESNHDSHYERNFLRNEV----LPIMNQRWQHFSQMVARSAQHCAEQQML 221

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVM 291
           + + LT  ++     S+  LNI     F       L+R+    CG Q  +P    + +V+
Sbjct: 222 LEELLTQELQRYADFSEKRLNIKDFPQFSVAKQQQLIRLWLEKCGTQ--MPSTVRLIQVI 279

Query: 292 ---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP---TLILYPEETTVWDGRYQFQ 345
              ++    K   + +    + R  + L++T  +  L     L+   +  T+ DG  + Q
Sbjct: 280 QQMIYTNVDKNPQIKLADFWLRRYQHHLYLTGELLELDDFCQLLFAQQSLTLPDGIGELQ 339

Query: 346 NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404
           +L DS+I        +  +P  +     Q  L+      + GKP+     +   +  +PV
Sbjct: 340 HLGDSIIYKKSGKINRLLLPEALVDASLQVKLAHQGKVAQYGKPMREEMKKLYQQAQVPV 399


>gi|333011028|gb|EGK30447.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-272]
 gi|333021823|gb|EGK41072.1| tRNA(Ile)-lysidine synthase [Shigella flexneri K-227]
          Length = 432

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 152/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+      ++     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALVREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+      +W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIV------LWQTWLQPLELPAGLGTVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|218688063|ref|YP_002396275.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ED1a]
 gi|331681573|ref|ZP_08382210.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H299]
 gi|218425627|emb|CAR06413.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ED1a]
 gi|315300660|gb|EFU59887.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 16-3]
 gi|331081794|gb|EGI52955.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H299]
          Length = 437

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   +     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TQQGTLKIAPMVAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      IL       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETILP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|225677084|ref|ZP_03788088.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590880|gb|EEH12103.1| tRNA(Ile)-lysidine synthase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 422

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/357 (22%), Positives = 138/357 (38%), Gaps = 15/357 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S  Y   + VAVSGG DS+ LL  + +            +A++V+H LR  ++ E  +V 
Sbjct: 5   SAFYNNQVAVAVSGGVDSIVLLHLMTNWAKKNKLSLP--TALTVNHGLRPESQKEADFVV 62

Query: 75  DVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                L      +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ E
Sbjct: 63  SYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +R +R     G+      D   +   ++I RP L   R +I  +     + W ED S
Sbjct: 123 TFLLRLERGSGVDGLSSM---DYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWVEDRS 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           N D ++ R   R  ++  D   +      L     +     + +   +     + VH   
Sbjct: 180 NYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLG 239

Query: 249 IIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML-FLKSGKRGCVSIGR 306
            I I   +   +   +   LL  S      +   P Y S+  +    L+       ++  
Sbjct: 240 YIEIKLSEFYQLPEEIALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKDSNVNCTLSG 299

Query: 307 VVIDRRANFLWITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
             I +    + I R    +  +   L   E+T WD R+    L +    +     +K
Sbjct: 300 CKIRKHGENILIIRESSKIQEITLNLPLNESTQWDNRFSCTILGNQECSVIIAPLKK 356


>gi|300938597|ref|ZP_07153329.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 21-1]
 gi|300456443|gb|EFK19936.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 21-1]
          Length = 437

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C R ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQRWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      IL       W    Q   L  +L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETILP------WQTWLQPLELPAALGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|170682716|ref|YP_001742316.1| tRNA(Ile)-lysidine synthetase [Escherichia coli SMS-3-5]
 gi|170520434|gb|ACB18612.1| tRNA(Ile)-lysidine synthase [Escherichia coli SMS-3-5]
          Length = 432

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|24111623|ref|NP_706133.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 301]
 gi|61216594|sp|Q7UDQ6|TILS_SHIFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|24050392|gb|AAN41840.1| cell cycle protein [Shigella flexneri 2a str. 301]
          Length = 432

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 151/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSATLCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  +++      I+      +W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSITGQSETIV------LWQTWLQPLELPAGLGTVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|254473236|ref|ZP_05086634.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062]
 gi|211957957|gb|EEA93159.1| tRNA(Ile)-lysidine synthase [Pseudovibrio sp. JE062]
          Length = 441

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 99/407 (24%), Positives = 163/407 (40%), Gaps = 24/407 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I + VSGG+DSM LL  L     +  F   K  A +V+H LR  A  E   V+  C+R
Sbjct: 27  RRIAIGVSGGADSMALLYLLKQWTQELGFAAPKLYAFTVNHGLRAEAASEAVGVAQYCTR 86

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + + H  + W+  KP + + +AAR+AR+ L+ + ++      +  AH  +DQ ET   R 
Sbjct: 87  IEVPHETLLWEGDKPSSNIQSAARDARHRLLRQASEDHGCDALFLAHHLEDQAETFLTRL 146

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R       GL+ +      D    I RP L   +  +++ L   ++ W EDPSN D++F
Sbjct: 147 ARGSGV--YGLACIRRDREMD-GFHICRPLLNISKARLKAVLHSAHVPWFEDPSNEDEQF 203

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAMLIPKYLTVHMRSIIAI 252
            R++ R+     +L  L L   K  D           ++  V  +  K  T H    +  
Sbjct: 204 TRIKFRQ--AQSELDELGLTATKLFDTARRMARAADAIDVWVDEVAEKSCTFHSAGPVRF 261

Query: 253 SQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRVVI- 309
               L  I   +   L+        G   +P    +E +   LKS +     ++G V   
Sbjct: 262 DSSCLEYIPDEIGLRLVGRLVRYISGAPYMPRLAKLEGLYETLKSEEGARAATLGGVRFA 321

Query: 310 --DRRANFLWIT-RAV--RNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIG-PQSYRKA 362
                 + +W   R      LP + + P +  +WD R++++   S    +I   Q     
Sbjct: 322 LAKPHEDGIWFCFREAGRAGLPEVEVKPGDEGIWDERWRYKAAHSSEGFRITYVQKELCG 381

Query: 363 DVPSGIPPIIAQRALSSMPSKEGGKPL-LAPFSRF-MTKFDLPVAYA 407
           D    IP    + A  + P       +   P+ +   T  D  V   
Sbjct: 382 DFELEIPANWLKTAFLTAPLIVFADGVSYMPWKKIGQTSADAEVRSR 428


>gi|218698608|ref|YP_002406237.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI39]
 gi|218368594|emb|CAR16331.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI39]
          Length = 432

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|331645331|ref|ZP_08346442.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           M605]
 gi|281177413|dbj|BAI53743.1| cell cycle protein [Escherichia coli SE15]
 gi|330910038|gb|EGH38548.1| tRNA(Ile)-lysidine synthetase [Escherichia coli AA86]
 gi|331046088|gb|EGI18207.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           M605]
          Length = 437

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 151/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  +  Q ++ W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWARQYDLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TQQGTLKIAPMLAMSDARRAAIIRRWLAGQNAPMPSREALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|300990435|ref|ZP_07179203.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 200-1]
 gi|300305735|gb|EFJ60255.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 200-1]
          Length = 437

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   +  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGVGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|331671694|ref|ZP_08372492.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA280]
 gi|331071539|gb|EGI42896.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA280]
          Length = 432

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGKVSEF---AGTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|110640407|ref|YP_668135.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 536]
 gi|191172763|ref|ZP_03034300.1| tRNA(Ile)-lysidine synthase [Escherichia coli F11]
 gi|110341999|gb|ABG68236.1| putative cell cycle protein MesJ [Escherichia coli 536]
 gi|190906913|gb|EDV66515.1| tRNA(Ile)-lysidine synthase [Escherichia coli F11]
          Length = 437

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|58698494|ref|ZP_00373399.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225630913|ref|YP_002727704.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
 gi|254764825|sp|C0R4S1|TILS_WOLWR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|58534988|gb|EAL59082.1| cell cycle protein MesJ [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|225592894|gb|ACN95913.1| tRNA(Ile)-lysidine synthase [Wolbachia sp. wRi]
          Length = 431

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 135/351 (38%), Gaps = 15/351 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VAVSGG DS+ LL  + +            +A++V+H LR  ++ E  +V      L
Sbjct: 20  QVAVAVSGGVDSIVLLHLMTNWAKKNKLSLP--TALTVNHGLRPESQKEADFVVSYAKEL 77

Query: 81  RIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
                 +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ ET  +R 
Sbjct: 78  GAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETFLLRL 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+      D   +   ++I RP L   R +I  +     + W ED SN D ++
Sbjct: 138 ERGSGVDGLSSM---DYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNYDLKY 194

Query: 200 ERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            R   R  ++  D   +      L     +     + +   +     + VH    I I  
Sbjct: 195 RRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIKL 254

Query: 255 -DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML-FLKSGKRGCVSIGRVVIDRR 312
            +   +   +   LL  S      +   P Y S+  +    L+       ++    I + 
Sbjct: 255 SEFYQLPEEIALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKDSNVNCTLSGCKIRKH 314

Query: 313 ANFLWITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
              + I R    +  +   L   E T WD R+    L +    +     +K
Sbjct: 315 GENILIIRESSKIQEITLNLPLNEPTQWDNRFSCTILGNQECSVIIAPLKK 365


>gi|293408280|ref|ZP_06652120.1| tilS [Escherichia coli B354]
 gi|291472531|gb|EFF15013.1| tilS [Escherichia coli B354]
          Length = 432

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 147/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    I    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLSDDIAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGKNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|157158325|ref|YP_001461357.1| tRNA(Ile)-lysidine synthetase [Escherichia coli E24377A]
 gi|193063304|ref|ZP_03044395.1| tRNA(Ile)-lysidine synthase [Escherichia coli E22]
 gi|193067588|ref|ZP_03048555.1| tRNA(Ile)-lysidine synthase [Escherichia coli E110019]
 gi|194428333|ref|ZP_03060875.1| tRNA(Ile)-lysidine synthase [Escherichia coli B171]
 gi|256021620|ref|ZP_05435485.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9]
 gi|260842420|ref|YP_003220198.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260853398|ref|YP_003227289.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260866337|ref|YP_003232739.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O111:H- str. 11128]
 gi|293476845|ref|ZP_06665253.1| cell cycle protein MesJ [Escherichia coli B088]
 gi|332282862|ref|ZP_08395275.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9]
 gi|157080355|gb|ABV20063.1| tRNA(Ile)-lysidine synthase [Escherichia coli E24377A]
 gi|192931212|gb|EDV83815.1| tRNA(Ile)-lysidine synthase [Escherichia coli E22]
 gi|192959000|gb|EDV89436.1| tRNA(Ile)-lysidine synthase [Escherichia coli E110019]
 gi|194413708|gb|EDX29988.1| tRNA(Ile)-lysidine synthase [Escherichia coli B171]
 gi|257752047|dbj|BAI23549.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257757567|dbj|BAI29064.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257762693|dbj|BAI34188.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O111:H- str. 11128]
 gi|291321298|gb|EFE60740.1| cell cycle protein MesJ [Escherichia coli B088]
 gi|320200286|gb|EFW74872.1| tRNA(Ile)-lysidine synthetase [Escherichia coli EC4100B]
 gi|323157975|gb|EFZ44077.1| tRNA(Ile)-lysidine synthetase [Escherichia coli EPECa14]
 gi|323176503|gb|EFZ62095.1| tRNA(Ile)-lysidine synthase [Escherichia coli 1180]
 gi|323181696|gb|EFZ67110.1| tRNA(Ile)-lysidine synthase [Escherichia coli 1357]
 gi|332105214|gb|EGJ08560.1| tRNA(Ile)-lysidine synthetase [Shigella sp. D9]
          Length = 432

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|215485349|ref|YP_002327780.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966325|ref|ZP_07780551.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 2362-75]
 gi|215263421|emb|CAS07741.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289568|gb|EFR17462.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 2362-75]
          Length = 437

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADVWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSAFA-GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|222032018|emb|CAP74757.1| tRNA(Ile)-lysidine synthase [Escherichia coli LF82]
 gi|312944796|gb|ADR25623.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 432

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|319404754|emb|CBI78356.1| tRNA(Ile)-lysidine synthase [Bartonella rochalimae ATCC BAA-1498]
          Length = 487

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 108/402 (26%), Positives = 173/402 (43%), Gaps = 51/402 (12%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +    F      +   +++ VSGG DS+ LL  +   L        +   +++DH LRE
Sbjct: 4   KLAKNLFKKTDFAHCQKLILGVSGGGDSLALLFLVKEHLKTVPLAP-EVIVVTIDHQLRE 62

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +  E   V+ +C  L+I H VV W+  KP+T +   AR ARY L+ + A+   ATLIMT
Sbjct: 63  ESAYEAESVAKICHALQIKHIVVRWEGKKPRTQISEKARIARYDLLFKEAQKQGATLIMT 122

Query: 125 AHTFDDQLETVYMRSQRD---------------YAEKG---------------------- 147
            HT +DQ ET  MR QR                + E+G                      
Sbjct: 123 GHTLNDQAETYQMRVQRSQKKTDGAQQEIPEILWEERGKERESANEEMQILKEKSQKRSA 182

Query: 148 --------MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                    GLS M    L    + + RP L  RR+ +R++L  +   W +DP+N D +F
Sbjct: 183 ENDEERYERGLSCMPREALLYGKVRLIRPLLGVRRKTLRAYLSLQGSKWIDDPTNEDLKF 242

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDIL 257
           ERVRVR  +    +  +  K+ K     RV+      +++   +TV + R  I      L
Sbjct: 243 ERVRVRHVLHQKKMTEIAQKVHKAALQRRVQAQKVADLILALDITVEYGRCFIGQPPSFL 302

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANF 315
                  F ++ +   + GG   L   + +  +   L L + ++   ++   VI+     
Sbjct: 303 QKHHAFPF-VVGLFIVLMGGSSYLLSSQKLAVLDQKLSLHNPEKKRFTLAGAVIEYSRKG 361

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           + I R  R++   ++ P E  +WD RYQ  N   S I++GP 
Sbjct: 362 IAIWREARHIQEAMIAPGEIFIWDQRYQIINHDTSAIRVGPA 403


>gi|288937030|ref|YP_003441089.1| tRNA(Ile)-lysidine synthetase [Klebsiella variicola At-22]
 gi|290512451|ref|ZP_06551817.1| cell cycle protein MesJ [Klebsiella sp. 1_1_55]
 gi|288891739|gb|ADC60057.1| tRNA(Ile)-lysidine synthetase [Klebsiella variicola At-22]
 gi|289774792|gb|EFD82794.1| cell cycle protein MesJ [Klebsiella sp. 1_1_55]
          Length = 437

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 101/432 (23%), Positives = 170/432 (39%), Gaps = 48/432 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +L     +LVA SGG DS  LL  L  +        +   A+ V H L   A D V +
Sbjct: 10  AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSAHADDWVAH 67

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C + ++   V     ++   G+ A AR ARY    +        +++TA   DDQ 
Sbjct: 68  CRQICQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEVLVTAQHQDDQC 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +  +R       GLS M  +  +  +  + RP L   RE +R + L   +SW ED 
Sbjct: 126 ETLLLALKRGSGP--TGLSAMAPSSAFADS-RLLRPLLNETRESLRQWALAHQLSWIEDE 182

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249
           SN DD ++R  +R  V    +  L  +   F +   +  +  A    L+ + L   + S+
Sbjct: 183 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 238

Query: 250 IAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
           +A    +      ++       LLR   A  G Q  +P     ER+       +     C
Sbjct: 239 VAEDGSLAITPLTSMSPPRRAALLRRWLA--GQQAPMPAREVPERLWHEVALAREDASPC 296

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
           + +G   + R    L+  + +      + +      W    Q   L+D L ++  Q   +
Sbjct: 297 LRLGDFTVRRFQQRLYWVKYLPGQTESVQH------WPDWRQPLRLADGLGELMLQPGGR 350

Query: 362 ADVPSGIPPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAY 406
              PS   P+  + RA   +    + GG+ L        + P+ R  T      + P+A 
Sbjct: 351 LRPPSADEPVTVRFRASGHLHIVGRHGGRKLKKIWQELGVPPWRRDTTPLLFYGETPIAA 410

Query: 407 A---FSISFGKV 415
           A   F  + G+V
Sbjct: 411 ADDLFVTTEGEV 422


>gi|157159653|ref|YP_001456971.1| tRNA(Ile)-lysidine synthetase [Escherichia coli HS]
 gi|209917378|ref|YP_002291462.1| tRNA(Ile)-lysidine synthetase [Escherichia coli SE11]
 gi|218552769|ref|YP_002385682.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI1]
 gi|218693653|ref|YP_002401320.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 55989]
 gi|307311364|ref|ZP_07591006.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W]
 gi|331666429|ref|ZP_08367310.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA271]
 gi|331680767|ref|ZP_08381426.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H591]
 gi|157065333|gb|ABV04588.1| tRNA(Ile)-lysidine synthase [Escherichia coli HS]
 gi|209910637|dbj|BAG75711.1| cell cycle protein [Escherichia coli SE11]
 gi|218350385|emb|CAU96068.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 55989]
 gi|218359537|emb|CAQ97075.1| tRNA(Ile)-lysidine synthetase [Escherichia coli IAI1]
 gi|306908343|gb|EFN38841.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W]
 gi|315059406|gb|ADT73733.1| tRNA(Ile)-lysidine synthetase [Escherichia coli W]
 gi|323380035|gb|ADX52303.1| tRNA(Ile)-lysidine synthetase [Escherichia coli KO11]
 gi|323945665|gb|EGB41714.1| PP-loop family protein [Escherichia coli H120]
 gi|324017845|gb|EGB87064.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 117-3]
 gi|324118308|gb|EGC12203.1| PP-loop family protein [Escherichia coli E1167]
 gi|331066640|gb|EGI38517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA271]
 gi|331072230|gb|EGI43566.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H591]
          Length = 432

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|254360930|ref|ZP_04977076.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica PHL213]
 gi|261493843|ref|ZP_05990355.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495109|ref|ZP_05991573.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153092409|gb|EDN73472.1| possible PP-loop superfamily ATPase [Mannheimia haemolytica PHL213]
 gi|261309179|gb|EEY10418.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310445|gb|EEY11636.1| putative PP-loop superfamily ATPase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 421

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 84/334 (25%), Positives = 137/334 (41%), Gaps = 29/334 (8%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L      L+ +SGG DS+ LL                  AI V H L   A D   +  
Sbjct: 14  HLPNQTAFLIGLSGGVDSVVLLHLFAR-------TSFHVRAIYVHHGLSPNADDWAAFCE 66

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C RL I   ++         G+   AREARY  I +  K     +  TAH  DDQ ET
Sbjct: 67  QYCKRLNIPF-ILQKVRVDSSNGVENGAREARYQAIQQQLKPN--EVFATAHHLDDQAET 123

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R    KG+        + +  N  + RP L   + D+  + +Q  + W ED SN
Sbjct: 124 FLLALKRGSGVKGLSAM---QAVTFLQNFTVFRPLLTFTKSDLMGYAVQHQLGWIEDESN 180

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSIIA 251
            D+R++R  +R  +    L  L  + + F  +  +     A    LI + L+  ++S   
Sbjct: 181 ADNRYDRNFLRNSI----LPLLNQRWQHFSQMVARSAQHCAEQQALIEELLSNELKSRTG 236

Query: 252 ISQDILNIDSTLLFYLLRVS----AAICGGQISLPGYRSMERV---MLFLKSGKRGCVSI 304
             Q  LNI+    F L +        +    + +P    ++ V   ++F K+ K   V +
Sbjct: 237 EKQQ-LNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQAVISELIFAKADKNPQVKV 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTL-ILYPEETTV 337
           G  +I R    +++T  + ++P   ++ P ET V
Sbjct: 296 GENIIRRYQQAIYVTEEIADIPPFEVVLPTETKV 329


>gi|91209258|ref|YP_539244.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UTI89]
 gi|117622473|ref|YP_851386.1| tRNA(Ile)-lysidine synthetase [Escherichia coli APEC O1]
 gi|218557129|ref|YP_002390042.1| tRNA(Ile)-lysidine synthetase [Escherichia coli S88]
 gi|237704347|ref|ZP_04534828.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 3_2_53FAA]
 gi|331661259|ref|ZP_08362191.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA206]
 gi|91070832|gb|ABE05713.1| putative cell cycle protein MesJ [Escherichia coli UTI89]
 gi|115511597|gb|ABI99671.1| putative cell cycle protein MesJ [Escherichia coli APEC O1]
 gi|218363898|emb|CAR01563.1| tRNA(Ile)-lysidine synthetase [Escherichia coli S88]
 gi|226902259|gb|EEH88518.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 3_2_53FAA]
 gi|294494175|gb|ADE92931.1| tRNA(Ile)-lysidine synthase [Escherichia coli IHE3034]
 gi|307629764|gb|ADN74068.1| tRNA(Ile)-lysidine synthetase [Escherichia coli UM146]
 gi|315285280|gb|EFU44725.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 110-3]
 gi|323950813|gb|EGB46690.1| PP-loop family protein [Escherichia coli H252]
 gi|323955070|gb|EGB50846.1| PP-loop family protein [Escherichia coli H263]
 gi|331052301|gb|EGI24340.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           TA206]
          Length = 432

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 149/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  + V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKFVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|15603921|ref|NP_220436.1| cell cycle protein MESJ (mesJ) [Rickettsia prowazekii str. Madrid
           E]
 gi|6226316|sp|Q9ZEA3|TILS_RICPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3860612|emb|CAA14513.1| CELL CYCLE PROTEIN MESJ (mesJ) [Rickettsia prowazekii]
 gi|292571638|gb|ADE29553.1| tRNA(Ile)-lysidine synthetase [Rickettsia prowazekii Rp22]
          Length = 430

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 95/424 (22%), Positives = 179/424 (42%), Gaps = 34/424 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ + ++   I+   ISVDH LR  +K E  Y+  + S 
Sbjct: 20  SKIAIAVSGGSDSISLLY-LANIWARKN--NIELFVISVDHNLRPQSKQENYYIHTISSN 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   +  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKYYNLSFDHQNNFSNLQERAREGRYDLMTNLCLELDVLVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L+   I W ED SN  D++
Sbjct: 137 ERNSGIFGLSSSNIH----WYNNIQIIRPLYNIPKSELVEYLVNHKIKWFEDESNLSDKY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254
            R  +R+ +        Y+K +     ++K N  +   +   L   +   + I +     
Sbjct: 193 RRNIIRQKL---FKEENYIKAE-ISLQQLKTNKLIEDELKPALISAIAEAVKIFEYGFTF 248

Query: 255 -DILNIDS---TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
            D++  D     +   ++     +  GQ     + S+  ++  +        ++   VI 
Sbjct: 249 LDLVKFDKFLNEVKAQIINFLLIMISGQSRSARFYSIAHILKLISQDINFKNTVHGCVIK 308

Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
           R  N L I R   + LP   +  +++ +WD R+       +   +   +Y        I 
Sbjct: 309 RIQNELLIYREFGKKLPKSKILLDKSVIWDNRFCITKNQKTPDCVI--TYLSLADYKAIK 366

Query: 370 PIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPR 419
             +  + L ++  K     L   P  + + K         +D  V + F +SF   F+ R
Sbjct: 367 KQLDLKHLKNLSCKNHNAILFTLPIIKILEKVIAIPHISYYDNDV-WNFEVSFAPNFVSR 425

Query: 420 LPFF 423
              F
Sbjct: 426 FTHF 429


>gi|82542786|ref|YP_406733.1| tRNA(Ile)-lysidine synthetase [Shigella boydii Sb227]
 gi|187730131|ref|YP_001878990.1| tRNA(Ile)-lysidine synthetase [Shigella boydii CDC 3083-94]
 gi|81244197|gb|ABB64905.1| cell cycle protein [Shigella boydii Sb227]
 gi|187427123|gb|ACD06397.1| tRNA(Ile)-lysidine synthase [Shigella boydii CDC 3083-94]
 gi|320186610|gb|EFW61335.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri CDC 796-83]
 gi|332098780|gb|EGJ03740.1| tRNA(Ile)-lysidine synthase [Shigella boydii 3594-74]
          Length = 432

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|300932146|ref|ZP_07147429.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 187-1]
 gi|300460083|gb|EFK23576.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 187-1]
          Length = 432

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/407 (21%), Positives = 144/407 (35%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+  
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   +  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGVGSVQLTAGVDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|194439921|ref|ZP_03071983.1| tRNA(Ile)-lysidine synthase [Escherichia coli 101-1]
 gi|253774785|ref|YP_003037616.1| tRNA(Ile)-lysidine synthetase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160307|ref|YP_003043415.1| tRNA(Ile)-lysidine synthetase [Escherichia coli B str. REL606]
 gi|312970289|ref|ZP_07784471.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 1827-70]
 gi|194421167|gb|EDX37192.1| tRNA(Ile)-lysidine synthase [Escherichia coli 101-1]
 gi|242376019|emb|CAQ30702.1| tRNA[Ile]-lysidine synthetase [Escherichia coli BL21(DE3)]
 gi|253325829|gb|ACT30431.1| tRNA(Ile)-lysidine synthetase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972208|gb|ACT37879.1| tRNA(Ile)-lysidine synthetase [Escherichia coli B str. REL606]
 gi|253976417|gb|ACT42087.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BL21(DE3)]
 gi|310337787|gb|EFQ02898.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 1827-70]
 gi|323959949|gb|EGB55596.1| PP-loop family protein [Escherichia coli H489]
 gi|323970667|gb|EGB65923.1| PP-loop family protein [Escherichia coli TA007]
          Length = 432

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/407 (21%), Positives = 144/407 (35%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+  
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGVDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|323975644|gb|EGB70740.1| PP-loop family protein [Escherichia coli TW10509]
          Length = 431

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 151/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLISRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L  +L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|323170980|gb|EFZ56629.1| tRNA(Ile)-lysidine synthase [Escherichia coli LT-68]
          Length = 432

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 152/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    ++   
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLVHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGALQIAPMLAMSDARRAAIIRRWLAGKNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQAWQQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|218547643|ref|YP_002381434.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ATCC 35469]
 gi|218355184|emb|CAQ87791.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ATCC 35469]
          Length = 432

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVMHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C +  +   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICHQWHVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        + +  +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L  +L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|206578043|ref|YP_002240324.1| tRNA(Ile)-lysidine synthase [Klebsiella pneumoniae 342]
 gi|206567101|gb|ACI08877.1| tRNA(Ile)-lysidine synthase [Klebsiella pneumoniae 342]
          Length = 437

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 101/432 (23%), Positives = 170/432 (39%), Gaps = 48/432 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +L     +LVA SGG DS  LL  L  +        +   A+ V H L   A D V +
Sbjct: 10  AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSAHADDWVAH 67

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C + ++   V     ++   G+ A AR ARY    +        +++TA   DDQ 
Sbjct: 68  CRQICQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEVLVTAQHQDDQC 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +  +R       GLS M  +  +  +  + RP L   RE +R + L   +SW ED 
Sbjct: 126 ETLLLALKRGSGP--TGLSAMAPSSAFADS-RLLRPLLNETRESLRQWALAHQLSWIEDE 182

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249
           SN DD ++R  +R  V    +  L  +   F +   +  +  A    L+ + L   + S+
Sbjct: 183 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 238

Query: 250 IAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
           +A         + ++       LLR   A  G Q  +P     ER+       +     C
Sbjct: 239 VAEDGSLSITPLTSMSPPRRAALLRRWLA--GHQAPMPAREVPERLWHEVALAREDASPC 296

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
           + +G   + R    L+  + +      + +      W    Q   L+D L ++  Q   +
Sbjct: 297 LRLGDFTVRRFQQRLYWVKYLPGQTESVQH------WPDWRQPLRLADGLGELMLQPGGR 350

Query: 362 ADVPSGIPPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAY 406
              PS   P+  + RA   +    + GG+ L        + P+ R  T      + P+A 
Sbjct: 351 LRPPSADEPVTVRFRASGHLHIVGRHGGRKLKKIWQELGVPPWRRDTTPLLFYGETPIAA 410

Query: 407 A---FSISFGKV 415
           A   F  + G+V
Sbjct: 411 ADDLFVTTEGEV 422


>gi|152968782|ref|YP_001333891.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953631|gb|ABR75661.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 437

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 105/444 (23%), Positives = 173/444 (38%), Gaps = 51/444 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF+  +  +     +L     +LVA SGG DS  LL  L  +        +   A+ V H
Sbjct: 1   MFVDMLADI---AHTLHPHRQLLVAFSGGLDSTVLLHQLVQLREQ--DPALTLRAVHVHH 55

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A   V +   VC + ++   V     ++   G+ A AR ARY    E        
Sbjct: 56  GLSAHADQWVAHCRQVCQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQETLNA--GE 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TA   DDQ ET+ +  +R       GLS M  +  +  +  + RP L   RE +R +
Sbjct: 114 VLVTAQHQDDQCETLLLALKRGSGP--TGLSAMAPSSAFAGS-RLLRPLLNETRESLRQW 170

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---L 237
            L   +SW ED SN DD ++R  +R  V    +  L  +   F +   +  +  A    L
Sbjct: 171 ALAHQLSWIEDESNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQL 226

Query: 238 IPKYLTVHMRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM- 291
           + + L   + S++A         +  +       LLR   A  G Q  +P     ER+  
Sbjct: 227 LDEMLAAELASLVAEDGSLAIAPLATMSPPRRAALLRRWLA--GQQAPMPAREVPERLWH 284

Query: 292 --LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349
                +     C+ +G   + R    L+  + +      +        W    Q   L+D
Sbjct: 285 EVALAREDASPCLRLGEFTVRRFQQRLYWVKYLPGQTDSVQR------WPDWRQPLRLAD 338

Query: 350 SLIQIGPQSYRKADVPSGIPPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMT 398
            L ++  Q   +   PS   P+  + RA   +    + GG+ L        +AP+ R  T
Sbjct: 339 GLGELTLQPGGRLRPPSADEPVTVRFRASGHLHIVGRHGGRKLKKLWQELGVAPWRRDTT 398

Query: 399 KF----DLPVAYA---FSISFGKV 415
                 + P+A A   F  + G+V
Sbjct: 399 PLLFYGETPIAAADDLFVTTEGEV 422


>gi|320196935|gb|EFW71556.1| tRNA(Ile)-lysidine synthetase [Escherichia coli WV_060327]
          Length = 437

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 150/406 (36%), Gaps = 37/406 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++  
Sbjct: 8   QLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHCE 65

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET
Sbjct: 66  NICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCET 123

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M +   +     + RP L   R ++  +  Q ++ W ED SN
Sbjct: 124 FLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWARQYDLRWIEDESN 180

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252
            DD ++R  +R  V  +    L  +   F +   +     A        +    +     
Sbjct: 181 QDDFYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQT 236

Query: 253 SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305
            Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +G
Sbjct: 237 QQGTLKIAPMLAMSDARRAAIIRRWLAGQNAPMPSREALVRIWQEVALAREDASPCLRLG 296

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              I R  + LW  ++V      I+       W    Q   L   L  +   +      P
Sbjct: 297 AFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRPP 350

Query: 366 SGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
                +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 351 RADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|188492707|ref|ZP_02999977.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 53638]
 gi|254037607|ref|ZP_04871684.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 1_1_43]
 gi|188487906|gb|EDU63009.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 53638]
 gi|226840713|gb|EEH72715.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 1_1_43]
          Length = 432

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|300824089|ref|ZP_07104209.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 119-7]
 gi|300523366|gb|EFK44435.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 119-7]
          Length = 432

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ RY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|320173331|gb|EFW48534.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae CDC 74-1112]
          Length = 432

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIMP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|191167023|ref|ZP_03028845.1| tRNA(Ile)-lysidine synthase [Escherichia coli B7A]
 gi|300816228|ref|ZP_07096451.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 107-1]
 gi|300923020|ref|ZP_07139087.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 182-1]
 gi|309796365|ref|ZP_07690774.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 145-7]
 gi|190902916|gb|EDV62643.1| tRNA(Ile)-lysidine synthase [Escherichia coli B7A]
 gi|300420647|gb|EFK03958.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 182-1]
 gi|300531435|gb|EFK52497.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 107-1]
 gi|308120069|gb|EFO57331.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 145-7]
          Length = 432

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 145/407 (35%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+  
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW   +V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWINSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|300023924|ref|YP_003756535.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525745|gb|ADJ24214.1| tRNA(Ile)-lysidine synthetase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 443

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 110/413 (26%), Positives = 177/413 (42%), Gaps = 22/413 (5%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++P E+   F   L    H+++AVSGG DSM LL+        R+      S  +VDH L
Sbjct: 9   ITPDEADAAF-EPLAKFEHVVLAVSGGPDSMALLVLASEWRQRRNGAPPSLSVATVDHGL 67

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-- 120
           R  +  E  +V+    RL + H  + W   KP  G+  AAR ARY L+ +HA+ ++A+  
Sbjct: 68  RPESPREAEFVASEAQRLGLPHVTLPWTGEKPSRGIPDAARRARYRLLDDHARALSASDV 127

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++TAH   DQ ET  MR  R     G+        +     + + RP L   +  + + 
Sbjct: 128 AVVTAHHQGDQAETFAMRLARGAGVNGLAGMPAERVLHEGSTVSLVRPLLAFAKSRLIAT 187

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L  R +S  +DPSN+D R+ER R+R  + D+D   +          R+    A      +
Sbjct: 188 LEARGLSSVDDPSNSDHRYERARMRSALSDLDAAGISPAALATSARRLGEAEAALRYADE 247

Query: 241 YLTVHMRS------IIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVMLF 293
                +          A  ++       LL   LL    A  GG    P    +E +   
Sbjct: 248 CFAATLALSFGNEVFAAFDRNAFRAGPALLRQRLLGSLIARYGGASERPDLVEIEDLTAR 307

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDSL 351
           L++  +   ++G V++   + F+ + R    L    LIL P E+  WD R+  Q  +D++
Sbjct: 308 LQAEDKSTATLGGVMVSSGSRFVRVWREAGRLTQSDLILSPGESRTWDRRFIVQRAADAI 367

Query: 352 IQ-----IGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGK-----PLLAPFS 394
                  +G ++Y +             RA  ++PS   G      P LAPF+
Sbjct: 368 GAVKVRPLGAENYARIAGRLAAKYRPPSRAAHALPSFWQGDDLVAVPSLAPFA 420


>gi|170021459|ref|YP_001726413.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ATCC 8739]
 gi|169756387|gb|ACA79086.1| tRNA(Ile)-lysidine synthetase [Escherichia coli ATCC 8739]
          Length = 432

 Score =  269 bits (687), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAAGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|254503322|ref|ZP_05115473.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11]
 gi|222439393|gb|EEE46072.1| hypothetical protein SADFL11_3361 [Labrenzia alexandrii DFL-11]
          Length = 459

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/394 (23%), Positives = 165/394 (41%), Gaps = 17/394 (4%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +     SL   + I +AVSGG DS+ LL+A     S R++       + VDH LR  +  
Sbjct: 23  IDQLFHSLKNFSKIALAVSGGGDSVCLLLAFCEWRSRRNWEG-ACEVVVVDHQLRPESSQ 81

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           E  +V ++  +  +   ++ W + KP+TG+  AAR ARY LI++         ++ AH  
Sbjct: 82  EACFVRELSEQHGLRCHILKWTDDKPETGVQEAARGARYQLIAKQTAVSGFEAVLLAHHL 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET   R  R     G+G     D       L + RPFL   +  + + L +R+  W
Sbjct: 142 DDQAETFLDRLTRGSGLNGLGAMA-SDEPEGPAGLRLLRPFLGVPKSRLLATLEERDQKW 200

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYL-----KMKKFQDLRVKVNNAVAMLIPKYLT 243
           C+DPSN   +++R R+R     +    L         ++ +  R  +   +A L  +++ 
Sbjct: 201 CDDPSNKSLKYKRSRLRSISSTLSEEGLSPSRIATTARQLRRAREALEMVLAELFRQHVE 260

Query: 244 VHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
            H    +  S  +           LL +      G++  P  R +E +  ++ +   G  
Sbjct: 261 EHPAGPVKTSTLVFRAQSEEFRLRLLILMIERVTGRVYQPKLRKIEALDHWILNNNAGRQ 320

Query: 303 SIGRVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQ-------NLSDSLIQI 354
           ++G  V++ + + L++ + + R+ P ++        WD R+ F          S   + +
Sbjct: 321 TLGGAVLEIKRDTLFVWKEIGRSPPEVLENLRGEGNWDARFLFDVQAAAGAPSSSMAVSL 380

Query: 355 GPQSYRKADVPS-GIPPIIAQRALSSMPSKEGGK 387
           GP      D      P    + A  S P    G 
Sbjct: 381 GPLFNAPVDRRQVSWPNGWPKEAFESAPVFWIGN 414


>gi|51473299|ref|YP_067056.1| cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington]
 gi|61216485|sp|Q68XR8|TILS_RICTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51459611|gb|AAU03574.1| probable cell cycle ATPase MesJ [Rickettsia typhi str. Wilmington]
          Length = 430

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/424 (22%), Positives = 184/424 (43%), Gaps = 34/424 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LR  +K E  Y+  + + 
Sbjct: 20  SKIAIAVSGGSDSVALLY-LANIWAEKN--NIELFIISVDHNLRAQSKQENYYIQSISNN 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L+  +  +S+ +    + L A ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LKRKYYNLSFDHQNNFSNLQARAREGRYDLMTNLCLELDVLVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L+   I W ED SN  D++
Sbjct: 137 ERNSGIFGLSSSNIH----WYNNIQIIRPLYNIPKSELVKYLVTNKIKWFEDESNLSDKY 192

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254
            R  +R+ +        Y+K +     ++K N  +   +   L   +   + I +     
Sbjct: 193 RRNIIRQKL---FKEENYIKAE-ISVQQLKTNKLIEDELKPELISAIGEAVKIFEYGFTF 248

Query: 255 -DILNIDS---TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
            D++  D     +   ++     +  GQ     + S+  ++  +        ++   VI 
Sbjct: 249 LDLVKFDKFSNEVKVQIINFLLIMISGQSRSARFYSIAPILKLISQNVNFKKTVHGCVIT 308

Query: 311 RRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
           R  N L I R   + LP   +  +++ +WD R+      ++   +   +Y   +    I 
Sbjct: 309 RIQNELLIYREFGKKLPKSKILLDKSVIWDNRFCITKNQETPDCVI--TYLSLEDYKVIK 366

Query: 370 PIIAQRALSSMPSKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPR 419
             +  + L ++  K     L   P  + + K         +D  + + F +SF   F+ R
Sbjct: 367 KQLDLKHLKNLSCKNHNAILFTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFAPNFVSR 425

Query: 420 LPFF 423
              F
Sbjct: 426 FTHF 429


>gi|99034626|ref|ZP_01314580.1| hypothetical protein Wendoof_01000607 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 407

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 143/378 (37%), Gaps = 17/378 (4%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH- 84
           VSGG DS+ LL  + +             A++V+H LR  ++ E  +V      L     
Sbjct: 1   VSGGVDSVVLLHLMTNWAKKNKLLLP--IALTVNHGLRPESQKEADFVVSYAKELGAKES 58

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ ET  +R +R   
Sbjct: 59  FILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETFLLRLERGSG 118

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
             G+      D   +   ++I RP L   R +I  +     + W ED SN D ++ R   
Sbjct: 119 VDGLSSM---DYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNHDLKYRRTLY 175

Query: 205 RRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILN 258
           R  ++  D   +      L     +     + +   +     + VH    I I   +   
Sbjct: 176 RNLLKSSDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIKLSEFYQ 235

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-LFLKSGKRGCVSIGRVVIDRRANFLW 317
           +   +   LL  S      +   P Y S+  +    L+       ++    I +    + 
Sbjct: 236 LPEEIALRLLLYSIMAIASKHYKPRYSSLIAIFNRILQKDSNVNCTLSGCKIRKYGENIL 295

Query: 318 ITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-ADVPSGIPPIIAQ 374
           I R    +  +   L   E T WD R+    L +    +     +K   VP  +      
Sbjct: 296 IIRESSRIQEITVNLPLNEPTQWDNRFSCTILGNQGCSVIIAPLKKTQKVPEFLKDYNCC 355

Query: 375 RAL-SSMPSKEGGKPLLA 391
             +  S+P+ +    +LA
Sbjct: 356 PEVFYSLPTVQKDSKVLA 373


>gi|332095129|gb|EGJ00161.1| tRNA(Ile)-lysidine synthase [Shigella boydii 5216-82]
          Length = 432

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADSWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPILAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGAIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|323190412|gb|EFZ75687.1| tRNA(Ile)-lysidine synthase [Escherichia coli RN587/1]
          Length = 432

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 149/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADVWVIHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSAFA-GTQLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIIGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|324112401|gb|EGC06378.1| PP-loop family protein [Escherichia fergusonii B253]
          Length = 431

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 151/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRAEN--PGVTLRAIHVHHGLSANANAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        + +  +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L  +L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|301330010|ref|ZP_07222697.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 78-1]
 gi|300843964|gb|EFK71724.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 78-1]
          Length = 432

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 145/407 (35%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPYFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+  
Sbjct: 236 TSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW   +V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWINSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|194435002|ref|ZP_03067243.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 1012]
 gi|194416738|gb|EDX32866.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 1012]
 gi|320180904|gb|EFW55826.1| tRNA(Ile)-lysidine synthetase [Shigella boydii ATCC 9905]
 gi|332097611|gb|EGJ02588.1| tRNA(Ile)-lysidine synthase [Shigella dysenteriae 155-74]
          Length = 432

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 146/407 (35%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +         +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLL--GEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEF---AGTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGAIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|300902007|ref|ZP_07120034.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 84-1]
 gi|301305324|ref|ZP_07211420.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 124-1]
 gi|300405893|gb|EFJ89431.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 84-1]
 gi|300839429|gb|EFK67189.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 124-1]
 gi|315254990|gb|EFU34958.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 85-1]
          Length = 432

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLTLRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    I    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDIAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 KPQGTLQIAPMLAMSDARRAAIIRRWLAGKNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|163869123|ref|YP_001610362.1| tRNA(Ile)-lysidine synthase [Bartonella tribocorum CIP 105476]
 gi|189035963|sp|A9IYI2|TILS_BART1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|161018809|emb|CAK02367.1| tRNA(Ile)-lysidine synthase [Bartonella tribocorum CIP 105476]
          Length = 495

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 108/413 (26%), Positives = 180/413 (43%), Gaps = 58/413 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +    F     +    +++AVSGGSDS+ L+  +   L        +  A++VDH LR+ 
Sbjct: 5   LARNLFKTSDFIPCRRVILAVSGGSDSLALMFLVKEYLETLLIPP-EIIAVTVDHQLRKE 63

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +  E   V+++C    I H  V W+  KP+T L  +AR ARY L+ + A+   A+LIMT 
Sbjct: 64  SAREAEIVAEICRDHHIKHITVRWEGKKPKTHLAFSARIARYDLLVQEAQKQGASLIMTG 123

Query: 126 HTFDDQLETVYMRSQRDYAEKGM------------------------------------- 148
           HT +DQ+ET  MR QR    +G                                      
Sbjct: 124 HTLNDQVETYQMRCQRLQKRRGALRDEVGAMCDGGAASGFAGALRDKAGARRDEDYVRET 183

Query: 149 ---------------GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
                          GLS +    L    + + RP L  +R+ +R++L  +  +W +DP+
Sbjct: 184 RKNIAEKSYGVLYERGLSCIPREALLHRKVRLIRPLLGVQRQTLRNYLRLQGKTWIDDPT 243

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIA 251
           N D  FERVRVR+ +    L  +  K+ K     R +  N   +++   +TV + R  I 
Sbjct: 244 NEDRNFERVRVRQSLSSQKLVNIAQKINKAAWQRRQQAQNIADLILALDITVQYGRCFIV 303

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGRVVI 309
                L   S   F ++ + A + GG   L   + +  ++  L L S ++   +    VI
Sbjct: 304 KPAPFLQKHSCFPF-VVGLFAVLMGGGFYLLSNQKLSMLVQKLCLNSPEKRRFTCAGCVI 362

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362
           +     + + R  RN+   ++ P+ET +WDGRY+  N     I++G  +  + 
Sbjct: 363 EYNKEGIALWRERRNMKEALVEPDETLLWDGRYRITNHGSEAIKVGVANLEQL 415


>gi|49476135|ref|YP_034176.1| hypothetical protein BH14760 [Bartonella henselae str. Houston-1]
 gi|61216510|sp|Q6G5P5|TILS_BARHE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49238943|emb|CAF28239.1| hypothetical protein BH14760 [Bartonella henselae str. Houston-1]
          Length = 493

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 109/402 (27%), Positives = 178/402 (44%), Gaps = 56/402 (13%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +    +++AVSGGSDS+ LL  +   L   S    +   ++VDH LR+ +  E   V+
Sbjct: 14  DFIQCQKLILAVSGGSDSLALLFLVKDHLKTLSVPP-EIIVVTVDHQLRQESAREASIVA 72

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++C    I H +V W+  KP+T + ++AR ARY L+ + A+   ATLIMT HT +DQ+ET
Sbjct: 73  EICRAHHIQHRIVRWEGKKPKTHIASSARVARYDLLFQEAQKQGATLIMTGHTLNDQVET 132

Query: 135 VYMRSQR-------------------------------------DYAEKG---------- 147
             MR QR                                          G          
Sbjct: 133 YQMRYQRLQKSADVLQQEAFAEMGGGVHADVLQQEAFAERCERMGVGGHGGDIAEKSDGL 192

Query: 148 ---MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
               GLS +    L    + + RP L  +RE +R++L  +  +W EDP+N D  FERVRV
Sbjct: 193 IYERGLSCIPREALLRGTVRLIRPLLGVKRETLRTYLRLKEKTWIEDPTNEDCNFERVRV 252

Query: 205 RRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDST 262
           R+ ++      +  K+ +     R +  N   +++   +TV + R  IA     L     
Sbjct: 253 RQSLQPKKFTCIARKVHEAALQRRQQAKNIADLILALDITVEYGRCFIAKPALFLQKHPG 312

Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGRVVIDRRANFLWITR 320
             F +   +  + GG   LP ++ +  ++  L L S ++   +    VI+   + +   R
Sbjct: 313 FPFVVGLFAVLMGGGFYLLP-HKKLSTLVQKLSLHSSEKRRFTYAGSVIEYNRSGIAFWR 371

Query: 321 AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362
             RN+   I+   +T +WDGRYQ  N S   I++G    ++ 
Sbjct: 372 EARNIKEAIVEKGQTFLWDGRYQITNHSHEPIKVGAAGLQQL 413


>gi|301155698|emb|CBW15166.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae T3T1]
          Length = 430

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 143/346 (41%), Gaps = 30/346 (8%)

Query: 11  FFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
            F   +  PA  +L+A SGG DS  LL  +  +   R    +   AI + H L   A   
Sbjct: 6   LFQAQIPTPANKLLIAFSGGLDSTALLSLVKKLSKKR--PHLSLRAIHIHHGLSPNADTW 63

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +   +C +  I   V   K  +   G+ A AREARY  IS H +      ++TAH  +
Sbjct: 64  TAHCQQLCKQFAIPLIVEKVKV-EMHDGIEAGAREARYQAISTHIQP--DEYLVTAHHLN 120

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET ++  +R    +G+G     ++ L+   + I RP L   R ++  ++ Q N+SW 
Sbjct: 121 DQTETFFLALKRGAGLQGLGAM-QKESQLF--GMPILRPLLSFSRNELEDYVQQENLSWV 177

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHM 246
           ED SN D+ +ER  +R  +    L  L  +   F     +          LI + L    
Sbjct: 178 EDESNQDNHYERNFLRNQI----LPELRQRWGHFDYAVQRAAQHCFEQQQLINELLQTCF 233

Query: 247 RSIIAISQ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSG 297
              I   Q      + LN  S     LLR+  A    QI++P    +  ++   +  K+ 
Sbjct: 234 EQHIFEDQKQFSLLNFLNYSSQKQTALLRMWLA--KNQIAMPTQIQLMHIIDDVIQAKAD 291

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDG 340
                 +G  +I R    L++T    +L    L     ++ T+ D 
Sbjct: 292 ASPQFQLGEHIIRRYQECLYLTGKFSDLSQTCLDMPLNQQITLPDN 337


>gi|190571198|ref|YP_001975556.1| tRNA(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018598|ref|ZP_03334406.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|254764824|sp|B3CLY6|TILS_WOLPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|190357470|emb|CAQ54904.1| trna(ile)-lysidine synthase (ec 6.3.4.-) (trna(ile)-lysidine
           synthetase) (trna(ile)-2-lysyl-cytidine synthase)
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995549|gb|EEB56189.1| trna(ile)-lysidine synthase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 430

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 146/389 (37%), Gaps = 17/389 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S  +   I VAVSGG DS+ LL  + +             A++V+H LR  ++ E  ++ 
Sbjct: 13  SFAFHNQIAVAVSGGVDSIVLLHLMTNWAKKNKLSLP--IALTVNHGLRSESQKEADFII 70

Query: 75  DVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                L      +++W+    +  +   AR+ARY L++E  K  N   ++ AH  DDQ E
Sbjct: 71  SYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKCLLVAHHKDDQAE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +R +R     G+      D   +   ++I RP L   R +I  +     + W ED S
Sbjct: 131 TFLLRLERGSGVDGLSSM---DYKSFLNGIYIFRPLLNFSRSEIERYAKLHQLRWIEDRS 187

Query: 194 NTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           N D ++ R   R  ++  D   +      L     +     + +   +     + VH   
Sbjct: 188 NYDLKYRRTLYRNLLKASDNQDVLTERICLTALHMKRAAKALMHYTRLAFDDCVNVHDFG 247

Query: 249 IIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML-FLKSGKRGCVSIGR 306
            I I   +   +   +   LL  S      +   P Y S+  +    L+ G     ++  
Sbjct: 248 YIEIKLSEFYQLPEEIALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKGSNVNCTLSG 307

Query: 307 VVIDRRANFLWITRAVRNLPTLI--LYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-AD 363
             I +    + I R    +  +   L    +  WD R+      D    +     +K   
Sbjct: 308 CKIRKYGENILIIRESSKIQEITVHLPLNGSIEWDNRFSCTIFGDQECSVTIAPLKKTQK 367

Query: 364 VPSGIPP-IIAQRALSSMPSKEGGKPLLA 391
           +P  +           S+P+ +    +LA
Sbjct: 368 IPEFLKNYDYCSEVYYSLPTVQKDGKMLA 396


>gi|323964919|gb|EGB60385.1| PP-loop family protein [Escherichia coli M863]
 gi|327255167|gb|EGE66770.1| tRNA(Ile)-lysidine synthase [Escherichia coli STEC_7v]
          Length = 431

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 152/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLISRQILVAFSGGLDSTVLLHQLVQWRTEN--PSVILRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEISEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        + +  +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L  +L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|325496120|gb|EGC93979.1| tRNA(Ile)-lysidine synthetase [Escherichia fergusonii ECD227]
          Length = 431

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 152/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLISRQILVAFSGGLDSTVLLHQLVQWRTEN--PSVILRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        + +  +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L  +L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAALGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|254466830|ref|ZP_05080241.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
 gi|206687738|gb|EDZ48220.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium Y4I]
          Length = 417

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 160/382 (41%), Gaps = 17/382 (4%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           VR   RS + PA + +A+SGG DSM L+  LH        G+++  A +VDH LR  + D
Sbjct: 12  VRSQFRSAL-PAKLGIALSGGGDSMALMHLLHDCF---GSGEVQLFAATVDHGLRPGSAD 67

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           E        +RL I H V+ W +      L A AR ARY L+   A+     ++   HT 
Sbjct: 68  EAAAAGAAAARLGIPHEVLHWADRPQDGNLQAQARAARYELLCGWARQHGIPVLALGHTA 127

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV MR  R       GLSGM     +   + + RP L   R ++R +L  R + W
Sbjct: 128 DDQAETVLMRMARASGV--TGLSGMAARRTH-KGVTLLRPLLDVTRSELRRYLEARGVDW 184

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLT 243
            EDPSN D RFERVRVR+ +  +    L  +      +     R  ++  V +       
Sbjct: 185 AEDPSNEDTRFERVRVRKALEHLAPLGLTPEVLASVARNMSKAREALDWYVFLAARDLAH 244

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           V   +++   +    +   +   LL  +     G    P    ME+ +   ++G    ++
Sbjct: 245 VQAGAVVLCQRKFRTLPVEISHRLLVRAVQWVSGAAYPPRRVPMEKAVQAARNGSSATLA 304

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
              +V   +   +W+ R    +  +   P +  +WDGR++         ++     +   
Sbjct: 305 GCHLVSTAKQ--VWVCREYNAVNGVTALPGQ--LWDGRWKIFGGDAKGCEVRALGRQGLA 360

Query: 364 V-PSGIPPIIAQRALSSMPSKE 384
             P      +    L   P+  
Sbjct: 361 QCPDWRATGVPGPVLEGTPAVW 382


>gi|324014127|gb|EGB83346.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 60-1]
          Length = 437

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 149/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V++ 
Sbjct: 7   RQLLSSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + +    V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQGPLGVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|309700396|emb|CBI99684.1| tRNA(Ile)-lysidine synthase [Escherichia coli ETEC H10407]
          Length = 432

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADTWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        + +  +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   +     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMMTMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQAWLQPLELPAGLGSVQLTAGVDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|183597578|ref|ZP_02959071.1| hypothetical protein PROSTU_00861 [Providencia stuartii ATCC 25827]
 gi|188023075|gb|EDU61115.1| hypothetical protein PROSTU_00861 [Providencia stuartii ATCC 25827]
          Length = 450

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/351 (22%), Positives = 132/351 (37%), Gaps = 27/351 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L P   +   +  + +   ILV  SGG DS  LL AL+ +        ++  AI + H
Sbjct: 1   MALQPQAIIEQVLNKIGHFRKILVGFSGGVDSTVLLHALYQI-KKYQLPSLEIRAIHIHH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A D   +   +C +  I              G+ AAAREARY             
Sbjct: 60  GLNVRADDWEAHCQHLCEQWHIPFVCTHVTVDPSNRGIEAAAREARYQAYRNELAE--GE 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRS 179
           +I TA   DDQ ET  +  +R     G+           +    W+ RP L   R D+ +
Sbjct: 118 IIATAQHLDDQAETFMLALKRGSGPAGLSSMPELSPFYAEKGETWLLRPLLAISRGDLEN 177

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM--- 236
           +  +  ++W ED SN DDR++R  +R  +    +  L  +   F     +  +  A    
Sbjct: 178 YAREYPLTWVEDDSNQDDRYDRNFLRIHI----MPTLTERWPHFAAAVSRSASLCAEQES 233

Query: 237 LIPKYLTVHMRSIIA-----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
           L+ + L   +  ++         ++ +        LLR    +   ++ +P Y  ++R+ 
Sbjct: 234 LLDELLQDALDEMMDYRGGLFIDNLHDCSPAKRNALLRRWVGL--HRLPMPPYHQLQRIW 291

Query: 292 L---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD 339
                 +        +G V I R    LWI R +  L        +   WD
Sbjct: 292 QEVALARQDAEPICQLGHVDIRRYQGALWIVRRINPL------LGQQFCWD 336


>gi|307136788|ref|ZP_07496144.1| tRNA(Ile)-lysidine synthetase [Escherichia coli H736]
 gi|331640642|ref|ZP_08341790.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H736]
 gi|331040388|gb|EGI12595.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           H736]
          Length = 432

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 151/407 (37%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  +  Q ++ W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELVQWARQYDLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
            SQ  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SSQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|238893184|ref|YP_002917918.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545500|dbj|BAH61851.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 433

 Score =  266 bits (680), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 101/432 (23%), Positives = 169/432 (39%), Gaps = 48/432 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +L     +LVA SGG DS  LL  L  +        +   A+ V H L   A D V +
Sbjct: 6   AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSAHADDWVAH 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C + ++   V     ++   G+ A AR ARY    +        +++TA   DDQ 
Sbjct: 64  CRQICQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEVLVTAQHQDDQC 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +  +R       GLS M  +  +  +  + RP L   RE +R + L   +SW ED 
Sbjct: 122 ETLLLALKRGSGP--TGLSAMAPSSAFAGS-RLLRPLLNETRESLRQWALAHQLSWIEDE 178

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249
           SN DD ++R  +R  V    +  L  +   F +   +  +  A    L+ + L   + S+
Sbjct: 179 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 234

Query: 250 IAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
           +A         + ++       LLR   A    Q  +P     ER+       +     C
Sbjct: 235 VAEDGSLAIAPLASMSPPRRAALLRRWLA--RQQAPMPAREVPERLWHEVALAREDASPC 292

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
           + +G   + R    L+  + +      +        W    Q   L+D L ++  Q   +
Sbjct: 293 LRLGEFTVRRFQQRLYWVKYLPGQTDSVQR------WPDWRQPLRLADGLGELTLQPGGR 346

Query: 362 ADVPSGIPPIIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAY 406
              PS   P+  + RA   +    + GG+ L        +AP+ R  T      + P+A 
Sbjct: 347 LRPPSADEPVTVRFRASGHLHIVGRHGGRKLKKLWQELGVAPWRRDTTPLLFYGETPIAA 406

Query: 407 A---FSISFGKV 415
           A   F  + G+V
Sbjct: 407 ADDLFVTTEGEV 418


>gi|300920126|ref|ZP_07136579.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 115-1]
 gi|300412860|gb|EFJ96170.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 115-1]
          Length = 432

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 88/407 (21%), Positives = 147/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADTWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC R ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCKRWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        + +  +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLVDDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   +     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 TPQGTLQIAPMMTMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQAWLQPLELPAGLGSVQLTAGVDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|293418073|ref|ZP_06660695.1| tilS [Escherichia coli B185]
 gi|291430791|gb|EFF03789.1| tilS [Escherichia coli B185]
          Length = 431

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPCEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELVQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGAIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|240851214|ref|YP_002972617.1| tRNA(Ile)-lysidine synthetase [Bartonella grahamii as4aup]
 gi|240268337|gb|ACS51925.1| tRNA(Ile)-lysidine synthetase [Bartonella grahamii as4aup]
          Length = 495

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 112/412 (27%), Positives = 182/412 (44%), Gaps = 56/412 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +    F     +    +++AVSGGSDS+ L+  +   L   S    +   ++VDH LR+ 
Sbjct: 5   LARNLFKTSDFIQCQKLILAVSGGSDSLALMFLVKEHLETLSVPP-EMIVVTVDHQLRKE 63

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +  EV  V+ +C    I H  V W+  KP+T + ++AR ARY L+ + A+   A++IMT 
Sbjct: 64  STREVETVAKICRVHHIKHIAVRWEGEKPKTHIASSARVARYDLLVKEAQKQGASVIMTG 123

Query: 126 HTFDDQLETVYMRSQRDYAEKGM------------------------------------- 148
           HT +DQ+ET  MR QR    +G                                      
Sbjct: 124 HTLNDQVETYQMRYQRLQKNRGALHGEVGAMRDEVYSSGFAGVLRGEADGIRDENHAREI 183

Query: 149 ---------------GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
                          GLS +    L    + + RP L  +R+ +R++L  +  +W +DP+
Sbjct: 184 RKKITKKNDSPLYERGLSCIPREALLHRKVRLIRPLLGVKRQTLRNYLRLQGQTWIDDPT 243

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTV-HMRSIIA 251
           N D  FERVRVR+ +    L  +  K+ +     R +  N   +++   +TV H R  IA
Sbjct: 244 NEDRNFERVRVRQSLHPEKLAYIAQKINEAALQRRQQAKNIADLILALDITVQHGRCFIA 303

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR-SMERVMLFLKSGKRGCVSIGRVVID 310
                L   S+  F +   +  + GG   LP  + SM    L L S ++   +    VI+
Sbjct: 304 KPALFLQKHSSFPFVVGLFAVLMGGGFYLLPNQKLSMLVQKLCLDSVEKKRFTYAGSVIE 363

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362
              + + + R  RN+   I+ P++T +WDGRYQ  N     I+IG  +  + 
Sbjct: 364 YNKHGISLWREGRNMKEAIVEPDKTFIWDGRYQITNHGSKAIKIGAANLEQL 415


>gi|118588322|ref|ZP_01545731.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Stappia aggregata IAM 12614]
 gi|118439028|gb|EAV45660.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Stappia aggregata IAM 12614]
          Length = 461

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 99/406 (24%), Positives = 160/406 (39%), Gaps = 24/406 (5%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           P   V      L   +++ +AVSGGSDS+ LL+ L      R+  +     + VDH LR 
Sbjct: 19  PANRVDALFSPLSSFSNLALAVSGGSDSLCLLV-LFDEWRKRTGWQGAAEVLCVDHQLRP 77

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +  E  +V+       +  +V+ W   KP   +   AR ARY L++   +   A  ++ 
Sbjct: 78  ESGQEAEFVAMNARACGLDCTVLRWSGDKPSANVQEEARLARYRLMAGRMRDTEAEALVL 137

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DDQ ET   R  R     G+      D       L + RP L   + D+ + L QR
Sbjct: 138 GHHLDDQAETFLDRLTRGSGVSGLSGMA-ADEGCGPEGLRLLRPLLSVSKSDLIAALEQR 196

Query: 185 NISWCEDPSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
              WC DPSN + +++R R+R  +       +    L       +  R  +   V  L  
Sbjct: 197 GRPWCTDPSNRNPKYKRSRLRVILSLLAEEGLSAERLAQTAANIRRAREALELTVEDLAA 256

Query: 240 KYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
           + +T H    + + +     +       LL    A   G++S P    ++ +   L SG 
Sbjct: 257 RLVTEHPAGPVRLDRYAYRTLAEEFRLRLLVYLLARVSGKVSRPRLAKLQALDRVLISGV 316

Query: 299 RGCVSIGRVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRY------QFQNLSDSL 351
           +   +    V D  A+ + + +   R  PT++     T  WDGRY      +     D+ 
Sbjct: 317 QNRQTFQGSVFDADADTIRVWKEAGRTPPTVVTGLAGTGTWDGRYLYRAPERVTGEGDAP 376

Query: 352 IQIG-----PQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAP 392
           + +G     P S R+ D P G P      A    P       ++ P
Sbjct: 377 LCLGPLTSAPVSRREIDWPEGWPKA----AFDCAPVLWRAGEIVVP 418


>gi|301646513|ref|ZP_07246387.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 146-1]
 gi|301075266|gb|EFK90072.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 146-1]
          Length = 432

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  +  Q ++ W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELVQWARQYDLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|16128181|ref|NP_414730.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89107068|ref|AP_000848.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170079824|ref|YP_001729144.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238899586|ref|YP_002925382.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BW2952]
 gi|256025500|ref|ZP_05439365.1| tRNA(Ile)-lysidine synthetase [Escherichia sp. 4_1_40B]
 gi|300949778|ref|ZP_07163753.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 116-1]
 gi|300956073|ref|ZP_07168397.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 175-1]
 gi|301028683|ref|ZP_07191903.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 196-1]
 gi|1708989|sp|P52097|TILS_ECOLI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|971394|emb|CAA90751.1| mesJ [Escherichia coli]
 gi|1122208|dbj|BAA08428.1| YaeN [Escherichia coli W3110]
 gi|1552765|gb|AAB08617.1| hypothetical [Escherichia coli]
 gi|1786386|gb|AAC73299.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|4902929|dbj|BAA77863.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K12 substr.
           W3110]
 gi|47230786|tpd|FAA00003.1| TPA: tRNA-Ile lysidine synthetase [Escherichia coli]
 gi|169887659|gb|ACB01366.1| tRNA(Ile)-lysidine synthetase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238863712|gb|ACR65710.1| tRNA(Ile)-lysidine synthetase [Escherichia coli BW2952]
 gi|260450609|gb|ACX41031.1| tRNA(Ile)-lysidine synthetase [Escherichia coli DH1]
 gi|299878282|gb|EFI86493.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 196-1]
 gi|300317067|gb|EFJ66851.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 175-1]
 gi|300450843|gb|EFK14463.1| tRNA(Ile)-lysidine synthetase [Escherichia coli MS 116-1]
 gi|315134878|dbj|BAJ42037.1| tRNA(Ile)-lysidine synthetase [Escherichia coli DH1]
 gi|315616327|gb|EFU96945.1| tRNA(Ile)-lysidine synthetase [Escherichia coli 3431]
 gi|323939936|gb|EGB36134.1| PP-loop family protein [Escherichia coli E482]
 gi|332341521|gb|AEE54855.1| tRNA(Ile)-lysidine synthetase TilS [Escherichia coli UMNK88]
          Length = 432

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  +  Q ++ W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELVQWARQYDLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|56697938|ref|YP_168309.1| PP-loop family protein [Ruegeria pomeroyi DSS-3]
 gi|61216401|sp|Q5LNU7|TILS_SILPO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56679675|gb|AAV96341.1| PP-loop family protein [Ruegeria pomeroyi DSS-3]
          Length = 419

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 153/395 (38%), Gaps = 21/395 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S   P  + VAVSGG DS+ L+  L         G++K    +VDH LR  +  E   V+
Sbjct: 19  SAQPPRRLGVAVSGGGDSVALMHLLARCFPR---GEVKLCVATVDHGLRSESASEAALVA 75

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              + L + H  + W     +  L   AR ARY L+++ A     T +  AHT DDQ ET
Sbjct: 76  RQAAGLGLPHETLLWTGWTGEGNLQDQARRARYGLLTDWALRNRVTTVALAHTADDQAET 135

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + MR  R     G+              + + RP L   R+ +R FL    I+W EDPSN
Sbjct: 136 LLMRLGRSAGVSGLAAMAPRRMQ---DGVVLVRPLLGITRDALRDFLRAEGIAWAEDPSN 192

Query: 195 TDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            D R++R++ R+ +       ID   L          R  ++    +       +    +
Sbjct: 193 EDIRYDRIKARQALAGLAPMGIDAQRLAEVAANMARAREALDWYTFLAARDLTRIDGGDV 252

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           +   +    +   +   LL       GG    P   ++   +  L+  +     +G  +I
Sbjct: 253 LLEPRGFRTLPDEIARRLLLHIVGWIGGGEYPPRRVAVAEALSALRHERS--SQLGGCLI 310

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL---SDSLIQIGPQSYRKADVPS 366
             +   +   R  + + TL +   +  +WDGR+  +        L  +G    +    P 
Sbjct: 311 LGQGRRIRFCREWKAVETLTVP--QGALWDGRWVLRGPVVKDGELRALGAAGLK--LCPD 366

Query: 367 GIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400
                    AL + PS   G  L+ AP +     +
Sbjct: 367 WRQTGRPYAALIASPSVWSGADLVAAPLAGLANGW 401


>gi|331651093|ref|ZP_08352121.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           M718]
 gi|331051547|gb|EGI23596.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           M718]
          Length = 432

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 150/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+      ++     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALVREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLTAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|323935028|gb|EGB31401.1| PP-loop family protein [Escherichia coli E1520]
          Length = 431

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|254714554|ref|ZP_05176365.1| hypothetical protein BcetM6_14687 [Brucella ceti M644/93/1]
 gi|254717451|ref|ZP_05179262.1| hypothetical protein BcetM_13811 [Brucella ceti M13/05/1]
          Length = 448

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 201/446 (45%), Gaps = 34/446 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERILSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392
           I P   ++      +    I     +  L S    EGGKP   P                
Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKPAFVPFLPGAEWPQGVHIERH 417

Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415
              F   +   D  +A A     G+ 
Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|209745664|gb|ACI71139.1| cell cycle protein MesJ [Escherichia coli]
 gi|320644764|gb|EFX13808.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H- str.
           493-89]
 gi|320652920|gb|EFX21158.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H- str. H
           2687]
 gi|320668931|gb|EFX35726.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 431

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|291281010|ref|YP_003497828.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|209745670|gb|ACI71142.1| cell cycle protein MesJ [Escherichia coli]
 gi|290760883|gb|ADD54844.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Escherichia coli
           O55:H7 str. CB9615]
 gi|320658308|gb|EFX26037.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663618|gb|EFX30902.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 431

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|82775579|ref|YP_401926.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae Sd197]
 gi|81239727|gb|ABB60437.1| cell cycle protein [Shigella dysenteriae Sd197]
          Length = 431

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 148/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVVLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+  
Sbjct: 236 SPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRF 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKALGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|320639994|gb|EFX09579.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. G5101]
          Length = 431

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 149/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++   G     AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGA--LRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|209745668|gb|ACI71141.1| cell cycle protein MesJ [Escherichia coli]
 gi|326345091|gb|EGD68834.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. 1125]
          Length = 431

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 148/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++   G     AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGA--LRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L      +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGQGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|157964107|ref|YP_001498931.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5]
 gi|166988065|sp|A8F0E8|TILS_RICM5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157843883|gb|ABV84384.1| tRNA(Ile)-lysidine synthetase [Rickettsia massiliae MTU5]
          Length = 477

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 98/467 (20%), Positives = 188/467 (40%), Gaps = 73/467 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRRFVRD-----------------------------------------IDLHALYL 218
            R  +R+ +                                           + L A + 
Sbjct: 193 RRNVIRQKLAKGADYIRHRSKPAYREEFKGDTERSTAAYTSVGEEALLRGSILSLEAKFG 252

Query: 219 KMKKFQDLRVKV--NNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFYL 267
            M K   +  ++  N  +   +   L   +   + I +      D++  D     +   +
Sbjct: 253 TMSKAAIISQQLKTNKLIENELKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQI 312

Query: 268 LRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNLP 326
           +     I  GQ     + S+E ++  +        ++   +I R  N L I R   + LP
Sbjct: 313 INFLLIIISGQSRAARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKLP 372

Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGG 386
              +  +++ +WD R+      ++       ++   +    I   +    L ++  K   
Sbjct: 373 ESKILLDKSVIWDNRFCITKNQETPNCF--VTHLSLEDYKIIKKQLDLEPLKNLSCKNHN 430

Query: 387 KPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423
             LL  P  + + K         +D  + + F +SF   F+ R   F
Sbjct: 431 AVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFAPNFVSRFTHF 476


>gi|126737230|ref|ZP_01752965.1| PP-loop family protein [Roseobacter sp. SK209-2-6]
 gi|126721815|gb|EBA18518.1| PP-loop family protein [Roseobacter sp. SK209-2-6]
          Length = 418

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 98/406 (24%), Positives = 168/406 (41%), Gaps = 22/406 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  + VAVSGG DS+ LL  L S         ++  A +VDH LR+ + +E ++ ++V 
Sbjct: 20  PPPRVGVAVSGGGDSLALLHLLKSCFDG---EPVEILAATVDHGLRKESAEEAKWTAEVA 76

Query: 78  SRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             L + H V+ W++   +TG L   AR ARY+L++  A+     ++   HT DDQ ETV 
Sbjct: 77  RGLGLRHEVLIWEDGPEETGNLQEQARHARYSLLTNWARRNGIPILTLGHTADDQAETVL 136

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G+       T+     + + RP L  RRE +RS+L      W +DPSN D
Sbjct: 137 MRLSRAGGVNGLAGIPQRRTL---NGVTLLRPLLEVRREALRSYLRDEGHDWIDDPSNDD 193

Query: 197 DRFERVRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            RFERVR R+ + ++      + AL    +     R  ++  V +           +++ 
Sbjct: 194 SRFERVRFRKALENLAELGITVPALATVAQNMSKARKALDWHVFLAARDIARFEAGAMVF 253

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
             +    +   +   LL+ +     G         M  +    ++ + G  ++    I  
Sbjct: 254 DLRKFRTLPDEIAHRLLQQAIQWISGNPYPARRLPM--IEAAEQARRGGSATLSGCRIMS 311

Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN---LSDSLIQIGPQSYRKADVPSGI 368
           R   +W+ R    +           +WDGR++          L  +G +  ++   P   
Sbjct: 312 RKCGVWVCREFAAVEHSSAPSG--GIWDGRWRVFAGEFGQSELRPLGAEGMKQC--PEWR 367

Query: 369 PPIIAQRALSSMPSKE-GGKPLLAPFSRFMTKFDLPVAYAFSISFG 413
              +    L   P+   GGK + AP + +       +  +    F 
Sbjct: 368 SQNLPGPVLEVTPALWQGGKLIAAPLAGYAKGTTAELVNSEEEFFA 413


>gi|261344719|ref|ZP_05972363.1| tRNA(Ile)-lysidine synthetase [Providencia rustigianii DSM 4541]
 gi|282567161|gb|EFB72696.1| tRNA(Ile)-lysidine synthetase [Providencia rustigianii DSM 4541]
          Length = 453

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/339 (23%), Positives = 139/339 (41%), Gaps = 25/339 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S    +   +  +     ILV  SGG DS  LL AL+ +     F  ++  AI V H
Sbjct: 1   MAKSSQIILEQILSKIGDHRKILVGFSGGIDSTVLLHALYQLKQSH-FPSLQVRAIHVHH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A     + +++C +  I              G+ AAAR+ARY    +  + +   
Sbjct: 60  GLNMRADKWEMHCAELCEQWNIPFVCHHVTVDASNNGVEAAARDARYQAYRD--ELLQNE 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDI 177
           +I+TA   DDQ ET  +  +R       GLS M ++  +D    N ++ RP L   R+++
Sbjct: 118 IIVTAQHLDDQAETFLLALKRGSGP--AGLSAMRESQPFDATRGNTYLLRPLLDISRQEL 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM- 236
             ++ +  + W ED SN DDR++R  +R  +    +  L  +   F +   +  +  A  
Sbjct: 176 ERYMQEYALPWVEDDSNQDDRYDRNFLRLHI----MPRLSERWPHFANAVSRSASLCAEQ 231

Query: 237 --LIPKYLTVHMRSIIA-----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
             L+ + L   +  I+          ++         LLR    +   Q+ +P +  +ER
Sbjct: 232 ESLLDELLQDSLDEIVDYRGGLFIDGLVECSIAKRNALLRRWIKL--HQLPMPPFNQLER 289

Query: 290 VML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325
           +       +        +G   I R    LW+ R + ++
Sbjct: 290 IWQEVALARQDAEPICRLGDREIRRYQGALWVVRRINSV 328


>gi|15799870|ref|NP_285882.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 EDL933]
 gi|15829444|ref|NP_308217.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|168752171|ref|ZP_02777193.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4113]
 gi|168758712|ref|ZP_02783719.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4401]
 gi|168764949|ref|ZP_02789956.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4501]
 gi|168769956|ref|ZP_02794963.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4486]
 gi|168777704|ref|ZP_02802711.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4196]
 gi|168782081|ref|ZP_02807088.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4076]
 gi|168789298|ref|ZP_02814305.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC869]
 gi|168802467|ref|ZP_02827474.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC508]
 gi|195939884|ref|ZP_03085266.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806040|ref|ZP_03248377.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4206]
 gi|208812463|ref|ZP_03253792.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4045]
 gi|208818383|ref|ZP_03258703.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4042]
 gi|209399704|ref|YP_002268796.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4115]
 gi|217324422|ref|ZP_03440506.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. TW14588]
 gi|254791321|ref|YP_003076158.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226942|ref|ZP_05941223.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255346|ref|ZP_05947879.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|61216683|sp|Q8X8W8|TILS_ECO57 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|12512916|gb|AAG54490.1|AE005194_11 cell cycle protein [Escherichia coli O157:H7 str. EDL933]
 gi|13359646|dbj|BAB33613.1| cell cycle protein MesJ [Escherichia coli O157:H7 str. Sakai]
 gi|187767122|gb|EDU30966.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4196]
 gi|188013918|gb|EDU52040.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4113]
 gi|189000414|gb|EDU69400.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4076]
 gi|189354503|gb|EDU72922.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4401]
 gi|189361024|gb|EDU79443.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4486]
 gi|189365138|gb|EDU83554.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4501]
 gi|189371100|gb|EDU89516.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC869]
 gi|189375538|gb|EDU93954.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC508]
 gi|208725841|gb|EDZ75442.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4206]
 gi|208733740|gb|EDZ82427.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4045]
 gi|208738506|gb|EDZ86188.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4042]
 gi|209161104|gb|ACI38537.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. EC4115]
 gi|209745666|gb|ACI71140.1| cell cycle protein MesJ [Escherichia coli]
 gi|209745672|gb|ACI71143.1| cell cycle protein MesJ [Escherichia coli]
 gi|217320643|gb|EEC29067.1| tRNA(Ile)-lysidine synthase [Escherichia coli O157:H7 str. TW14588]
 gi|254590721|gb|ACT70082.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           TW14359]
 gi|320190286|gb|EFW64936.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str.
           EC1212]
 gi|326339757|gb|EGD63565.1| tRNA(Ile)-lysidine synthetase [Escherichia coli O157:H7 str. 1044]
          Length = 431

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 148/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++   G     AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGGA--LRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M +   +     + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGP--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G    +P   ++ R+       +     C+ +
Sbjct: 236 SPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRL 295

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L      +   +      
Sbjct: 296 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGQGSVQLNAGGDIRP 349

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 350 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|223041688|ref|ZP_03611884.1| tRNA (Ile)-lysidine synthase [Actinobacillus minor 202]
 gi|198246543|gb|ACH82232.1| tRNA (Ile)-lysidine synthase [Actinobacillus minor 202]
          Length = 423

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 92/403 (22%), Positives = 153/403 (37%), Gaps = 33/403 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
              P   LVA+SGG DS+        +L      K+   A+ V H L   A   V +   
Sbjct: 19  FPRPPSFLVALSGGVDSVV-------LLHLLHRLKLPLRAVHVHHGLSPNADQWVAFCQH 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C +  I   V   + +  + G+ A ARE RY  I E     +  +++TAH  DDQ ET 
Sbjct: 72  YCQQQAIPLCVKYVQVNGKK-GIEAEAREKRYQTIRET--REHNEVVVTAHHLDDQAETF 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R    KG+        + +     I RP L   + DI ++   +N+SW ED SN 
Sbjct: 129 LLALKRGSGVKGLSAM---QAVNFSQKFPIFRPLLAVSKNDILAYAQSQNLSWIEDESNQ 185

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP-------KYLTVHMRS 248
              ++R  +R  V    L  L  + ++F  +  +    +A           + L  +   
Sbjct: 186 STDYDRNFLRHKV----LPVLNEQWEQFNRMVARSCEHLAHQQQLLDELLSEELAKYKDG 241

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305
              + QD   +       LLR+   +   Q+ +P    +E++   ++  K  K   + +G
Sbjct: 242 QTLVIQDFAGLTKIKQQALLRLW--LSEQQMLMPSTAQLEQIIQNIILAKEDKNPEIQLG 299

Query: 306 RVVIDRRANFLWITR---AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362
             ++ R  N L+IT     V      I   E   + +G  Q     D +I        + 
Sbjct: 300 DKMLRRYQNRLFITPIYTPVATFSKEIQQQETIILPNGLGQVLRAKDKIIYQTAHKIDRL 359

Query: 363 DVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404
            +   +        L      KE GK       +   K+ +PV
Sbjct: 360 QLSEALQQEKLFVHLKYQGKIKEYGKTYHEEMKKIWQKYQIPV 402


>gi|261219282|ref|ZP_05933563.1| tRNA(Ile)-lysidine synthase [Brucella ceti M13/05/1]
 gi|261322343|ref|ZP_05961540.1| tRNA(Ile)-lysidine synthase [Brucella ceti M644/93/1]
 gi|260924371|gb|EEX90939.1| tRNA(Ile)-lysidine synthase [Brucella ceti M13/05/1]
 gi|261295033|gb|EEX98529.1| tRNA(Ile)-lysidine synthase [Brucella ceti M644/93/1]
          Length = 453

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 135/444 (30%), Positives = 200/444 (45%), Gaps = 34/444 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295
             L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++    
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERILSGQD 304

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
           + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +I 
Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364

Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392
           P   ++      +    I     +  L S    EGGKP   P                  
Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKPAFVPFLPGAEWPQGVHIERHFA 424

Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415
            F   +   D  +A A     G+ 
Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448


>gi|254708440|ref|ZP_05170268.1| hypothetical protein BpinM_16175 [Brucella pinnipedialis
           M163/99/10]
 gi|254708707|ref|ZP_05170518.1| hypothetical protein BpinB_00311 [Brucella pinnipedialis B2/94]
 gi|256030233|ref|ZP_05443847.1| hypothetical protein BpinM2_06231 [Brucella pinnipedialis
           M292/94/1]
 gi|256160408|ref|ZP_05458097.1| hypothetical protein BcetM4_15479 [Brucella ceti M490/95/1]
 gi|256255614|ref|ZP_05461150.1| hypothetical protein BcetB_15298 [Brucella ceti B1/94]
 gi|260167908|ref|ZP_05754719.1| hypothetical protein BruF5_05982 [Brucella sp. F5/99]
 gi|261757346|ref|ZP_06001055.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella sp. F5/99]
 gi|261737330|gb|EEY25326.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella sp. F5/99]
          Length = 448

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERILSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392
           I P   ++      +    I     +  L S    EGGK    P                
Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417

Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415
              F   +   D  +A A     G+ 
Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|283835250|ref|ZP_06354991.1| tRNA(Ile)-lysidine synthetase [Citrobacter youngae ATCC 29220]
 gi|291068961|gb|EFE07070.1| tRNA(Ile)-lysidine synthetase [Citrobacter youngae ATCC 29220]
          Length = 430

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/397 (21%), Positives = 147/397 (37%), Gaps = 33/397 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA SGG DS  LL  L    +     ++   AI + H L   A   V++   VC++ +
Sbjct: 16  ILVAFSGGLDSTVLLHQLVLWRAQ--HPQVALRAIHIHHGLSPHADGWVQHCESVCAQWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V          G+ A AR ARY   ++    +   ++MTA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVHLEDDGLGIEAQARRARYQAFAQTL--LPGEVLMTAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+   G            + RP L   RE +  +  Q  + W ED SN DD ++R
Sbjct: 132 GSGPAGLSAMGERSPF---AGTQLIRPLLAQTREALEGWARQHQLCWIEDESNQDDAYDR 188

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  V  + L   +    +       +      L+ + L   + + +  +Q  L +  
Sbjct: 189 NFLRLRVTPL-LQQRWPHFAQATARSAALCAEQESLLDELLASDLANCV-TAQGTLLLAP 246

Query: 262 TLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRAN 314
            ++   +R +A     + G    +P   ++ER+       +     C  +G   I R  +
Sbjct: 247 LMMMSDVRRAALLRRWLAGLHAPMPSRDALERIWQEVALAREDASPCFRLGGFDIRRYQS 306

Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ 374
            LW  + V      ++       W        L   L  +      +  +P    P+  +
Sbjct: 307 QLWWVKPVDGHSETVIP------WSCWQTPLTLPAGLGSVQLTPAGELRMPQADEPVSIR 360

Query: 375 ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
                L  +  + GG+ L        + P+ R  T  
Sbjct: 361 FKASGLLHIVGRSGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|110635497|ref|YP_675705.1| tRNA(Ile)-lysidine synthetase [Mesorhizobium sp. BNC1]
 gi|110286481|gb|ABG64540.1| tRNA(Ile)-lysidine synthetase [Chelativorans sp. BNC1]
          Length = 446

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 138/421 (32%), Positives = 204/421 (48%), Gaps = 27/421 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++ AVSGG DS+ LL  L   L +R        A++VDH LR  +  E R V ++ +   
Sbjct: 25  VVAAVSGGGDSLALLFLLQDFL-ERQPSGPSLLAVTVDHGLRPDSATEARAVGELAAARG 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           IAH  + W+ +KP+ G+ AAAREAR AL++  A+     L+ TAHT DDQ ET+ MR   
Sbjct: 84  IAHRTLRWEEAKPKAGISAAAREARLALLARAAREAGTDLVFTAHTADDQAETLAMRL-- 141

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G G +G+    L++ ++W +RP L  RR  +R++L +R ISW EDPSN D RFER
Sbjct: 142 -SRGGGRGAAGIAPATLFEGDVWFTRPLLHTRRAALRTYLGERGISWFEDPSNRDPRFER 200

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
            RVR  + +    AL  + +  Q LR +   A A LI    T     ++  +    + + 
Sbjct: 201 ARVRACLDEDRTQALLAEAENAQRLRQEQGRAAADLIGSAATRVAPGLLRFALAAASEEK 260

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
             L Y LR+  A+ GG   L        ++      +R  VS+ R V+ R+ ++L++ R 
Sbjct: 261 GGL-YALRIVLAVAGGSPHLADEARSAALLRRALEDERCRVSLSRAVVTRKRDWLYLHRE 319

Query: 322 VRNLPTLILYPEETTVWDGRYQF----QNLSDSLIQIGPQSYRKADVPSGI-PPIIAQRA 376
            RNLP   L  E+  +WDGRY+     Q     +   GP +    DV     P  + + A
Sbjct: 320 RRNLPETSLSGEQ--IWDGRYRLVPAGQLKGACVAAFGPANAAARDVAEAEAPAGLLRSA 377

Query: 377 LSSMPSKEGGK---------------PLLAPFSRFMTKFDLPVAYAFSISFGKVFIPRLP 421
           L++ P+   G                 L  P++R +  FDL  A A          P LP
Sbjct: 378 LAAEPAIWRGDLCLGLASDMEGLVLQRLAQPWARLLPSFDLAPASALLELLNGSVPPILP 437

Query: 422 F 422
           F
Sbjct: 438 F 438


>gi|148981150|ref|ZP_01816312.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3]
 gi|145960977|gb|EDK26302.1| cell cycle protein MesJ [Vibrionales bacterium SWAT-3]
          Length = 443

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 137/341 (40%), Gaps = 23/341 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F +S + P  ++VA SGG DS  LL              I   AI V H L + A     
Sbjct: 12  FDQSAIKPHRLVVAFSGGVDSRVLLELAAQYTKTHE---IDCQAIHVHHGLSDNADQWAE 68

Query: 72  YVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                C  L +  +V     + +    +   AR+ARY     H +     +++T    DD
Sbjct: 69  QCQVWCDDLSVPLAVERVSLDVRSGESIEKLARDARYNAFKSHLRQ--GDVLVTGQHVDD 126

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q+ET  +  +R    KG  LS M   + +     I RP L   R +I +F  +  ++W E
Sbjct: 127 QVETFLLALKRGSGPKG--LSSMAKVMPF-SGAHIVRPMLSVTRAEIEAFARRMGLTWVE 183

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN D RF+R  +R  V  + L   +   ++      ++     ML+ + L  H++  +
Sbjct: 184 DESNQDVRFDRNFIRHQVTPL-LTERWPSFRESVSRSAQLCAEQEMLLDELLASHLQRAL 242

Query: 251 AISQDI----LNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCV 302
              Q +    L+  S LL   LLR+    C  Q ++P  + ++ +       +      +
Sbjct: 243 GDDQSLSVEVLSEQSALLRARLLRMWLGHC--QQAMPSQKQLQLIWEEVACAQRDANPKL 300

Query: 303 SIGRVVIDRRANFLWITRAVRNL---PTLILYPEETTVWDG 340
            +    + R    L++ R  ++L      I       + DG
Sbjct: 301 MLNGAEVRRFNEKLYLVRETKDLSGWQGEISVGGRLLLPDG 341


>gi|313646751|gb|EFS11210.1| tRNA(Ile)-lysidine synthetase [Shigella flexneri 2a str. 2457T]
 gi|333010683|gb|EGK30116.1| tRNA(Ile)-lysidine synthase [Shigella flexneri VA-6]
          Length = 416

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 145/396 (36%), Gaps = 37/396 (9%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A SGG DS  LL  L    ++     +   AI V H L   A   V +  +VC + ++  
Sbjct: 2   AFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHCENVCQQWQVPL 59

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET  +  +R   
Sbjct: 60  VVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCETFLLALKRGSG 117

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
               GLS M +   +     + RP L   R ++  + L   + W ED SN DD ++R  +
Sbjct: 118 P--AGLSAMAEVSEFA-GTRLIRPLLARTRGELEQWALAHGLRWIEDESNQDDSYDRNFL 174

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDILNIDST 262
           R  V  +    L  +   F +   +     A        +    +     SQ  L I   
Sbjct: 175 RLRVVPL----LQQRWPHFAEATARSATLCAEQESLLDELLADDLAHCQTSQGTLQIAPM 230

Query: 263 LLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANF 315
           L     R +A     + G    +P   ++ R+       +     C+ +G   I R  + 
Sbjct: 231 LAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFEIRRYQSQ 290

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ- 374
           LW  ++V      I+      +W    Q   L   L  +   +      P     +  + 
Sbjct: 291 LWWIKSVTGQSETIV------LWQTWLQPLELPAGLGTVQLTAGGDIRPPRADEAVSVRF 344

Query: 375 --RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
               L  +  + GG+ L        + P+ R  T  
Sbjct: 345 KAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 380


>gi|260914165|ref|ZP_05920638.1| tRNA(Ile)-lysidine synthetase [Pasteurella dagmatis ATCC 43325]
 gi|260631798|gb|EEX49976.1| tRNA(Ile)-lysidine synthetase [Pasteurella dagmatis ATCC 43325]
          Length = 435

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/321 (24%), Positives = 136/321 (42%), Gaps = 28/321 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+  SGG DS  LL+    +  +R    ++  AI + H L   A     +   +C +
Sbjct: 18  KQFLIGFSGGLDSTALLLLFTKLRENR--PHLQMRAIHIHHGLSANADSWTEHCKQICEQ 75

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +   +   +      G+ A AREARY  IS+H   +   ++ TAH   DQ ET ++  
Sbjct: 76  LNVPLIIEKVRV-DTCNGIEAGAREARYQAISQHI--LPDEILATAHHLQDQTETFFLAL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    +G+G   +  T+    NL + RP L   R ++  F+    + W ED SN D+R+
Sbjct: 133 KRGSGLQGLGAMQLQSTV---YNLPVFRPLLHFTRPELEQFVQATKLDWVEDESNRDNRY 189

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS------ 253
           ER  +R  +    L  L  +   F DL V+ +        + +   +    A +      
Sbjct: 190 ERNFLRNEI----LPELRQRWAHF-DLAVQRSAQHCFEQQQLINELLADEFAQNFDKTDR 244

Query: 254 ----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGR 306
               Q      +T    LLR+   +   Q+ +P    +E+++   +F +S       +G 
Sbjct: 245 SFSIQQFAQYSATKQKALLRLW--LNEWQLPMPSLVQLEQIIQDVIFARSDSNPLFQLGE 302

Query: 307 VVIDRRANFLWITRAVRNLPT 327
            V+ R    L++T    ++ T
Sbjct: 303 KVVRRHQQKLYLTPQFTDIST 323


>gi|157827938|ref|YP_001494180.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932627|ref|YP_001649416.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa]
 gi|166988066|sp|A8GQJ7|TILS_RICRS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|189035969|sp|B0BVY4|TILS_RICRO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157800419|gb|ABV75672.1| cell cycle protein MesJ [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907714|gb|ABY72010.1| tRNA(Ile)-lysidine synthetase [Rickettsia rickettsii str. Iowa]
          Length = 478

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 183/468 (39%), Gaps = 74/468 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIHIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERV-----------RVRRFVRDIDLHALYLKMKKFQDL---------------------- 226
            R             +R F + +         ++                          
Sbjct: 193 RRNVIRQKLAKGADYIRHFSKPVYREEFKGDTERSTAAYTSVREDASTGTASKLSLEAKC 252

Query: 227 -----------RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFY 266
                      ++K N  +       L   +   + I +      D++  D     +   
Sbjct: 253 GKMSKAAIISQQLKTNKRIENEFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQ 312

Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNL 325
           ++     I  GQ     + S+E ++  +        ++   +I R  N L I R   + L
Sbjct: 313 IINFLLIIISGQSRAARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKL 372

Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385
           P   +  +++ +WD R+      ++       ++        I   +    L ++  K  
Sbjct: 373 PESKILLDKSVIWDNRFCITKNQEAPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNH 430

Query: 386 GKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423
              LL  P  + + K         +D  + + F +SF   F+ R   F
Sbjct: 431 NAVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 477


>gi|256370101|ref|YP_003107612.1| tRNA(Ile)-lysidine synthetase [Brucella microti CCM 4915]
 gi|256000264|gb|ACU48663.1| tRNA(Ile)-lysidine synthetase [Brucella microti CCM 4915]
          Length = 448

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 135/448 (30%), Positives = 201/448 (44%), Gaps = 38/448 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANF--LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
                   +++   +I+R          R  RNLP L L P +  VWDGR+ F N     
Sbjct: 298 --QDAPRRLTVFGALIERGEKGTPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRS 355

Query: 352 IQIGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP-------------- 392
            +I P   ++      +    I     +  L S    EGGK    P              
Sbjct: 356 FEIAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIE 415

Query: 393 -----FSRFMTKFDLPVAYAFSISFGKV 415
                F   +   D  +A A     G+ 
Sbjct: 416 RHFAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|317047001|ref|YP_004114649.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. At-9b]
 gi|316948618|gb|ADU68093.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. At-9b]
          Length = 433

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 148/364 (40%), Gaps = 30/364 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LS + ++      L   A  ++A SGG DS  LL  L          +++  A+ V H
Sbjct: 1   MSLSHLAAL------LTPDARCVLAFSGGLDSTVLLHQLVCWRQQ--HPQMQLRALHVHH 52

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A     +   +C +  I   V+  +    + G+ AAAR+ARY  + +H +     
Sbjct: 53  GLSPNADSWAAHCQHLCQQWHIPCEVLRVRVDGREQGIEAAARDARYQALLQHLQP--GE 110

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++TA   DDQ ET+ +  +R       GL+ M    +   N  + RP L   R+ + S+
Sbjct: 111 HLLTAQHLDDQCETLLLALKRGSGP--AGLAAMPSQRILGENTHL-RPLLALSRQQLESW 167

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
             Q  +SW ED SN D R++R  +R+ V  + L A +            +      L+ +
Sbjct: 168 AAQHQLSWIEDESNADCRYDRNFLRQQVLPL-LQARWPHFSAAAARSAALCGEQEQLLDE 226

Query: 241 YLTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---ML 292
            L   +  +           +L +       LLR   A  GG  ++P   ++ R+   ++
Sbjct: 227 LLAEQLAQLTDKQGRLNFTPLLAMQEARRHALLRRWIAGQGG--TMPSRDALLRITREVM 284

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352
             +   + C+  G   + R    L+       LP+     + +  W  R Q   L +SL 
Sbjct: 285 HSREDAQPCLHFGAFELRRYRQQLYW------LPSQPSLSQHSLTWHDRSQPLPLPESLG 338

Query: 353 QIGP 356
           ++  
Sbjct: 339 ELQA 342


>gi|62290564|ref|YP_222357.1| hypothetical protein BruAb1_1677 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700480|ref|YP_415054.1| hypothetical protein BAB1_1704 [Brucella melitensis biovar Abortus
           2308]
 gi|148560003|ref|YP_001259546.1| tRNA(Ile)-lysidine synthetase [Brucella ovis ATCC 25840]
 gi|189024784|ref|YP_001935552.1| hypothetical protein BAbS19_I15940 [Brucella abortus S19]
 gi|254689861|ref|ZP_05153115.1| hypothetical protein Babob68_06777 [Brucella abortus bv. 6 str.
           870]
 gi|254694354|ref|ZP_05156182.1| hypothetical protein Babob3T_06787 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698012|ref|ZP_05159840.1| hypothetical protein Babob28_09973 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254700354|ref|ZP_05162182.1| hypothetical protein Bsuib55_05789 [Brucella suis bv. 5 str. 513]
 gi|254730896|ref|ZP_05189474.1| hypothetical protein Babob42_06812 [Brucella abortus bv. 4 str.
           292]
 gi|256258115|ref|ZP_05463651.1| hypothetical protein Babob9C_12379 [Brucella abortus bv. 9 str.
           C68]
 gi|260547191|ref|ZP_05822929.1| tRNA-lysidine synthetase [Brucella abortus NCTC 8038]
 gi|261214662|ref|ZP_05928943.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 3 str. Tulya]
 gi|297248964|ref|ZP_06932672.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 5 str. B3196]
 gi|75496348|sp|Q57BI8|TILS_BRUAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|123547188|sp|Q2YQH6|TILS_BRUA2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|166988057|sp|A5VS49|TILS_BRUO2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695537|sp|B2S7D1|TILS_BRUA1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|62196696|gb|AAX74996.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616581|emb|CAJ11660.1| Protein of unknown function UPF0021 [Brucella melitensis biovar
           Abortus 2308]
 gi|148371260|gb|ABQ61239.1| tRNA(Ile)-lysidine synthetase [Brucella ovis ATCC 25840]
 gi|189020356|gb|ACD73078.1| hypothetical protein BAbS19_I15940 [Brucella abortus S19]
 gi|260095556|gb|EEW79434.1| tRNA-lysidine synthetase [Brucella abortus NCTC 8038]
 gi|260916269|gb|EEX83130.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 3 str. Tulya]
 gi|297174097|gb|EFH33454.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 5 str. B3196]
          Length = 448

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392
           I P   ++      +    I     +  L S    EGGK    P                
Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417

Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415
              F   +   D  +A A     G+ 
Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|306815213|ref|ZP_07449362.1| tRNA(Ile)-lysidine synthetase [Escherichia coli NC101]
 gi|305850875|gb|EFM51330.1| tRNA(Ile)-lysidine synthetase [Escherichia coli NC101]
          Length = 421

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 144/396 (36%), Gaps = 37/396 (9%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A SGG DS  LL  L    ++     +   AI V H L   A   V++  ++C + ++  
Sbjct: 2   AFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVKHCENICQQWQVPL 59

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET  +  +R   
Sbjct: 60  VVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCETFLLALKRGSG 117

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
               GLS M +   +     + RP L   R ++  + L   + W ED SN DD ++R  +
Sbjct: 118 P--AGLSAMAEVSEFA-GTQLIRPLLARTRGELVQWALAHGLRWIEDESNQDDSYDRNFL 174

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDILNIDST 262
           R  V  +    L  +   F +   +     A        +    +      Q  L I   
Sbjct: 175 RLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQTPQGTLQIAPM 230

Query: 263 LLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANF 315
           L     R +A     + G    +P   ++ R+       +     C+ +G   I R  + 
Sbjct: 231 LAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFEIRRYQSQ 290

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ- 374
           LW  ++V      I+       W    Q   L   L  +   +      P     +  + 
Sbjct: 291 LWWIKSVAGQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRPPRADEAVSVRF 344

Query: 375 --RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
               L  +  + GG+ L        + P+ R  T  
Sbjct: 345 KAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 380


>gi|225853148|ref|YP_002733381.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis ATCC 23457]
 gi|256045303|ref|ZP_05448197.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114261|ref|ZP_05455006.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263360|ref|ZP_05465892.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565805|ref|ZP_05836288.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. 16M]
 gi|61216690|sp|Q8YIV0|TILS_BRUME RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|254789035|sp|C0REV5|TILS_BRUMB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225641513|gb|ACO01427.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis ATCC 23457]
 gi|260151178|gb|EEW86273.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. 16M]
 gi|263093359|gb|EEZ17428.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409706|gb|ADZ66771.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis M28]
 gi|326539413|gb|ADZ87628.1| tRNA(Ile)-lysidine synthetase [Brucella melitensis M5-90]
          Length = 448

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392
           I P   ++      +    I     +  L S    EGGK    P                
Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417

Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415
              F   +   D  +A A     G+ 
Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|58584411|ref|YP_197984.1| ATPase [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|75498061|sp|Q5GTD2|TILS_WOLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|58418727|gb|AAW70742.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control, MesJ [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
          Length = 431

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 139/355 (39%), Gaps = 15/355 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           VY   + VAVSGG DS+ LL  + S    R        A++V+H LR  +++EV +V   
Sbjct: 16  VYNNKVAVAVSGGIDSIVLLHLITSWAEKRQCPPP--IALAVNHGLRPESQEEVEFVVSY 73

Query: 77  CSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              L +    +++WK    +  + + AR+ARY L++E  K  +   +  AH  DDQ ET 
Sbjct: 74  AKELGVKKSFILNWKRQNIKGNVQSQARKARYELLTEWCKNNDVKHLFIAHHKDDQAETF 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +R +R     G+       ++     + + RP L   R  I+ +     + W ED SN 
Sbjct: 134 LLRLERGSGLDGLSSMDYKSSL---NGVCMLRPLLSFSRSRIKKYADFYRLKWVEDRSNQ 190

Query: 196 DDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
             +++R   R  ++     +I    + L     +     + +   +     + VH    I
Sbjct: 191 SLKYKRTLYRNLLKASGNQEILTERICLTTLHIKRATKALMHYTRLAFNDCVNVHDLGYI 250

Query: 251 AISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML-FLKSGKRGCVSIGRVV 308
            I   +   +   +   LL  S  +   +   P Y S+  +    L+       ++    
Sbjct: 251 EIKLSEFYKLPEEIALRLLLYSIMVISSKHYKPRYNSLIAIFNKVLQKDNDVHCTLSGCK 310

Query: 309 IDRRANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
           I +    + I R    +    + L       WD R+    L +    +     +K
Sbjct: 311 IRKYGESILIIRESSKIQEISVSLPLNAPIEWDNRFSCTILGNQECSVTIAPLKK 365


>gi|294850945|ref|ZP_06791621.1| tRNA(Ile)-lysidine synthase [Brucella sp. NVSL 07-0026]
 gi|294821588|gb|EFG38584.1| tRNA(Ile)-lysidine synthase [Brucella sp. NVSL 07-0026]
          Length = 448

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNVDCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392
           I P   ++      +    I     +  L S    EGGK    P                
Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417

Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415
              F   +   D  +A A     G+ 
Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|28374025|pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli
          Length = 433

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 148/407 (36%), Gaps = 37/407 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 8   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVALRAIHVHHGLSANADAWVTHC 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 66  ENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 123

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS   +   +     + RP L   R ++  +  Q ++ W ED S
Sbjct: 124 TFLLALKRGSGP--AGLSAXAEVSEFA-GTRLIRPLLARTRGELVQWARQYDLRWIEDES 180

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 181 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 236

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSI 304
             Q  L I   L     R +A     + G     P   ++ R+       +     C+ +
Sbjct: 237 SPQGTLQIVPXLAXSDARRAAIIRRWLAGQNAPXPSRDALVRIWQEVALAREDASPCLRL 296

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
           G   I R  + LW  ++V      I+       W    Q   L   L  +   +      
Sbjct: 297 GAFEIRRYQSQLWWIKSVTGQSENIVP------WQTWLQPLELPAGLGSVQLNAGGDIRP 350

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 351 PRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 397


>gi|15891990|ref|NP_359704.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7]
 gi|20140671|sp|Q92JK0|TILS_RICCN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15619104|gb|AAL02605.1| cell cycle protein MesJ [Rickettsia conorii str. Malish 7]
          Length = 478

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 184/468 (39%), Gaps = 74/468 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L++ NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVRHNIKWFEDESNSSDKY 192

Query: 200 ERV-----------RVRRFVRDIDLHALYLKMKKFQDL---------------------- 226
            R             +R F + +         ++                          
Sbjct: 193 RRNVIRQKLAKGADYIRHFSKPVYREEFKGDTERSTAAYTLVREDASTGTASKLSLEAKC 252

Query: 227 -----------RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFY 266
                      ++K N  +       L   +   + I +      D++  D     +   
Sbjct: 253 GKMSKAAIISQQLKTNKLIENEFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQ 312

Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNL 325
           ++     I  GQ     + S+E ++  +        ++   +I R  N L I R   + L
Sbjct: 313 IINFLLIIISGQSRAARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKL 372

Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385
           P   +  +++ +WD R+      ++       ++        I   +    L ++  K  
Sbjct: 373 PESKILLDKSVIWDNRFCITKNQETPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNH 430

Query: 386 GKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423
              LL  P  + + K         +D  + + F +SF   F+ R   F
Sbjct: 431 NAVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 477


>gi|254719695|ref|ZP_05181506.1| hypothetical protein Bru83_09158 [Brucella sp. 83/13]
 gi|306837846|ref|ZP_07470708.1| tRNA(Ile)-lysidine synthetase [Brucella sp. NF 2653]
 gi|306407085|gb|EFM63302.1| tRNA(Ile)-lysidine synthetase [Brucella sp. NF 2653]
          Length = 448

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 134/446 (30%), Positives = 199/446 (44%), Gaps = 34/446 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHRVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ +  D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLDADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392
           I P   ++      +    +     +  L S    EGGK    P                
Sbjct: 358 IAPPGRQELIDFLKNSGRDMESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417

Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415
              F   +   D  +A A     G+ 
Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|225628261|ref|ZP_03786295.1| tRNA(Ile)-lysidine synthetase [Brucella ceti str. Cudo]
 gi|261222817|ref|ZP_05937098.1| tRNA(Ile)-lysidine synthase [Brucella ceti B1/94]
 gi|261315940|ref|ZP_05955137.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M163/99/10]
 gi|261316198|ref|ZP_05955395.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis B2/94]
 gi|265987261|ref|ZP_06099818.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M292/94/1]
 gi|265998776|ref|ZP_06111333.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella ceti M490/95/1]
 gi|225616107|gb|EEH13155.1| tRNA(Ile)-lysidine synthetase [Brucella ceti str. Cudo]
 gi|260921401|gb|EEX88054.1| tRNA(Ile)-lysidine synthase [Brucella ceti B1/94]
 gi|261295421|gb|EEX98917.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis B2/94]
 gi|261304966|gb|EEY08463.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M163/99/10]
 gi|262553465|gb|EEZ09234.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella ceti M490/95/1]
 gi|264659458|gb|EEZ29719.1| tRNA(Ile)-lysidine synthase [Brucella pinnipedialis M292/94/1]
          Length = 453

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 34/444 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295
             L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++    
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERILSGQD 304

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
           + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +I 
Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364

Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392
           P   ++      +    I     +  L S    EGGK    P                  
Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFA 424

Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415
            F   +   D  +A A     G+ 
Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448


>gi|34580975|ref|ZP_00142455.1| cell cycle protein MesJ [Rickettsia sibirica 246]
 gi|28262360|gb|EAA25864.1| cell cycle protein MesJ [Rickettsia sibirica 246]
          Length = 478

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 99/468 (21%), Positives = 185/468 (39%), Gaps = 74/468 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L++ NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVRHNIKWFEDESNSSDKY 192

Query: 200 ERV-----------RVRRFVRDIDLHA----------------------------LYLKM 220
            R             +R F + +                                L  K 
Sbjct: 193 RRNVIRQKLAKGADYIRHFSKPVYREEFKGDTERSIAAYTVVCEDASTGTASKLSLEAKC 252

Query: 221 KKFQDL-----RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFY 266
            K         ++K N  +       L   +   + I +      D++  D     +   
Sbjct: 253 GKMSKAAIISQQLKTNKLIENEFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQ 312

Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNL 325
           ++     I  GQ     + S+E ++  +        ++   +I R  N L I R   + L
Sbjct: 313 IINFLLIIISGQSRAARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKL 372

Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385
           P   +  +++ +WD R+      ++       ++        I   +    L ++  K  
Sbjct: 373 PESKILLDKSVIWDNRFCITKNQETPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNH 430

Query: 386 GKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423
              LL  P  + + K         +D  + + F +SF   F+ R   F
Sbjct: 431 NAVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 477


>gi|254995320|ref|ZP_05277510.1| cell cycle protein (mesJ) [Anaplasma marginale str. Mississippi]
          Length = 501

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 166/416 (39%), Gaps = 38/416 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + SL       VAVSGG DS+ LL  + ++   ++  +     ++V+H  R  A  E R+
Sbjct: 63  LNSLELSGGYAVAVSGGVDSITLLNLVAALHKTQATSRP--VVLTVNHGFRAEADHETRF 120

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V      L +   ++ W   +  +     ARE RY+L+ +     +   ++TAH   DQ 
Sbjct: 121 VQKRAVALGLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQA 180

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV M  +R     G  LSGM +  ++  ++ I RP L   R++I  +  Q+ +SW EDP
Sbjct: 181 ETVLMHLERGSGIDG--LSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDP 237

Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           SN D ++ R   R  + +     + +  L             + + V   +   L     
Sbjct: 238 SNQDPKYRRTFFRNLIAESKNPGVVVDRLCRTTSHMHRALACILHYVRSSLDYCLEFSPL 297

Query: 248 SIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305
             I + SQ++ ++   +   LL +S    GG+   P Y +   ++  +  G+     ++ 
Sbjct: 298 GFITVKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSAFWPILTKILQGQDFTPRTLH 357

Query: 306 RVVIDRRANFLW-ITRAVRNLPTLILYPE--ETTVWDGRYQFQ----------------- 345
              + +  +  + I R +  + T I      ET  WD R+  +                 
Sbjct: 358 GCKVRKEPDGNFSIVRELARIETKIGVKTIAETIQWDRRFAIKIMCTHNASAAETTSCSA 417

Query: 346 ----NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396
               N S+    +         +P  +   + +    S+P    G  +LA P+   
Sbjct: 418 KHAPNPSEETQNLYITPLGNGSLPEHLV-HVNRDVACSLPVLAHGDKVLAYPWQTH 472


>gi|237729494|ref|ZP_04559975.1| tRNA(Ile)-lysidine synthetase [Citrobacter sp. 30_2]
 gi|226909223|gb|EEH95141.1| tRNA(Ile)-lysidine synthetase [Citrobacter sp. 30_2]
          Length = 431

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 142/392 (36%), Gaps = 25/392 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA SGG DS  LL  L    +     ++   AI + H L   A   V++   VC + +
Sbjct: 16  ILVAFSGGLDSTVLLHQLVQWRAQ--HPEVALRAIHIHHGLSPHADSWVQHCESVCMQWQ 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V          G+ A AR ARY   ++    +   ++MTA   DDQ ET  +  +R
Sbjct: 74  VPLVVERVHLEDDGLGIEAQARRARYQAFAQTL--LPGEVLMTAQHLDDQCETFLLALKR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+   G            + RP L   RE + ++  Q  + W ED SN DD ++R
Sbjct: 132 GSGPAGLSAMGENTPFA---GTQLIRPLLAQTREVLETWARQHELCWIEDESNQDDTYDR 188

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  V  + L   +    +       +      L+ + LT  +   I     +L +  
Sbjct: 189 NFLRLRVTPL-LQQRWPHFAQAVARSAALCAEQESLLDELLTSDLADCITAHGTLLLVPL 247

Query: 262 TLLFYLLRVSA---AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANF 315
            ++  + R +     + G    +P    +ER+       +     C  +G   + R  + 
Sbjct: 248 MMMSDVRRAALLRRWLAGLNAPMPSRDGLERIWQEVALAREDASPCFRLGEYEVRRYQSQ 307

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQR 375
           LW  ++V      ++   E   W           S+  I     R       +       
Sbjct: 308 LWWVKSVDGQSETVIPWLE---WKTPLALPAGLGSVQLISAGELRMPQADEAVSIRFKAP 364

Query: 376 ALSSMPSKEGGKPL--------LAPFSRFMTK 399
            L  +  + GG+ L        + P+ R  T 
Sbjct: 365 GLLHIVGRNGGRKLKKIWQEQGIPPWRRDTTP 396


>gi|256061730|ref|ZP_05451867.1| hypothetical protein Bneo5_15421 [Brucella neotomae 5K33]
          Length = 448

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 133/425 (31%), Positives = 197/425 (46%), Gaps = 18/425 (4%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAF 408
           I P   ++      +    I     +  L S    EGGK    PF   +   + P     
Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPF---LPGAEWPQGVHI 414

Query: 409 SISFG 413
              F 
Sbjct: 415 ERHFA 419


>gi|268590514|ref|ZP_06124735.1| tRNA(Ile)-lysidine synthetase [Providencia rettgeri DSM 1131]
 gi|291314100|gb|EFE54553.1| tRNA(Ile)-lysidine synthetase [Providencia rettgeri DSM 1131]
          Length = 450

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 28/337 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILV  SGG DS  LL AL+ +   R    ++  AI + H L   A +  ++ + +CS+ 
Sbjct: 21  KILVGFSGGIDSTVLLHALYLIRQQR-LPSLEIRAIHIHHGLNRKANEWEQHCAQLCSQW 79

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I            Q G+ AAAREARY    E  +     +++TA   DDQ ET  +  +
Sbjct: 80  DIPFICRHVVVDSSQKGIEAAAREARYQAYREELQE--GEVLVTAQHLDDQAETFMLALK 137

Query: 141 RDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R       GLS M + + +     + W+ RP L   R  + +++ ++ +SW ED SN DD
Sbjct: 138 RGSGP--AGLSSMPELLSFSACCGSTWLLRPLLSTPRIALEAYMQEQQLSWVEDDSNQDD 195

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-----I 252
           R++R  +R  +    L   +            +      L+ + L   +  ++       
Sbjct: 196 RYDRNFLRLHIMP-TLSERWPHFSHAVARSAALCAEQESLLDELLKETLEGMMDYRGGLF 254

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
             D+    S+    L+R    +   Q+ +P +  +ER+       +        +G+  I
Sbjct: 255 IDDLQGCSSSKRNALIRRWVGL--HQLPMPPFNQLERIWQEVALARQDADPICRLGQFEI 312

Query: 310 DRRANFLWITRAVRNL---------PTLILYPEETTV 337
            R    LW+ + + +L         P  I  PE   +
Sbjct: 313 RRYQGALWVVKRINSLLNKQFEWAFPEAIELPESLGI 349


>gi|23502550|ref|NP_698677.1| hypothetical protein BR1692 [Brucella suis 1330]
 gi|61216663|sp|Q8FZ11|TILS_BRUSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|23348550|gb|AAN30592.1| conserved hypothetical protein [Brucella suis 1330]
          Length = 448

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVKLARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392
           I P   ++      +    I     +  L S    EGGK    P                
Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLASVPFLPGAEWPQGVHIERH 417

Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415
              F   +   D  +A A     G+ 
Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|149202855|ref|ZP_01879826.1| Probable cell cycle protein [Roseovarius sp. TM1035]
 gi|149143401|gb|EDM31437.1| Probable cell cycle protein [Roseovarius sp. TM1035]
          Length = 418

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 95/393 (24%), Positives = 153/393 (38%), Gaps = 16/393 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGGSDS+ LL  LH        G    +A++VDH LR T+  E   V+ +C+
Sbjct: 21  PTRLGVAVSGGSDSLALLHLLHGWS---LVGGPTPAAVTVDHGLRPTSAQEAVDVAQICA 77

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           RL I H  V W+       L   AR ARYAL+++ A+  +   I   HT DD  ET  MR
Sbjct: 78  RLAIPHDTVRWQGWDGSGNLPDHARRARYALLTDWARANDLHDIAIGHTQDDVAETFLMR 137

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G+              +   RP L   RE +R  L +   SW +DP+N D  
Sbjct: 138 LARGAGVDGLAAM---RPRWTQSGVTFHRPLLDLSREALRDHLRRLGQSWIDDPTNDDTT 194

Query: 199 FERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           + R R R+ +  +    L         +    +R  +++A        L V    I+   
Sbjct: 195 YLRPRARQSLMALAPMGLGAATLADVARTLSGVRTALDHATLTAARALLQVQSGDILIDH 254

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
               ++   +   L++       G+   P   ++   +   + G    +  G +++  + 
Sbjct: 255 PGFNDLPEEIARRLMQAMLQWLAGEEYPPRGTALASFIKAARDGHTMPLH-GCLLLPPKN 313

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-PSGIPPII 372
             L +TR    +  L       T+WD R+Q    +   ++I           P      +
Sbjct: 314 GQLRLTREYAAVKGLRAP--VNTLWDNRWQASGPASPGVEIAALGPNGLQACPDWRQSGL 371

Query: 373 AQRALSSMPSKEGGKPLL-APFSRFMTKFDLPV 404
              +    P    G  L+ AP       + L +
Sbjct: 372 PHASALCAPGLWQGDTLIAAPLMGHPNGWALIL 404


>gi|161619622|ref|YP_001593509.1| tRNA(Ile)-lysidine synthase [Brucella canis ATCC 23365]
 gi|163845272|ref|YP_001622927.1| tRNA(Ile)-lysidine synthetase [Brucella suis ATCC 23445]
 gi|254703471|ref|ZP_05165299.1| tRNA(Ile)-lysidine synthetase [Brucella suis bv. 3 str. 686]
 gi|260568779|ref|ZP_05839247.1| tRNA(Ile)-lysidine synthase [Brucella suis bv. 4 str. 40]
 gi|189035965|sp|A9M7J1|TILS_BRUC2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|189035966|sp|A9WWG9|TILS_BRUSI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|161336433|gb|ABX62738.1| tRNA(Ile)-lysidine synthase [Brucella canis ATCC 23365]
 gi|163675995|gb|ABY40105.1| tRNA(Ile)-lysidine synthetase [Brucella suis ATCC 23445]
 gi|260154163|gb|EEW89245.1| tRNA(Ile)-lysidine synthase [Brucella suis bv. 4 str. 40]
          Length = 448

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 34/446 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAG 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392
           I P   ++      +    I     +  L S    EGGK    P                
Sbjct: 358 IAPPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLASVPFLPGAEWPQGVHIERH 417

Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415
              F   +   D  +A A     G+ 
Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|306841411|ref|ZP_07474113.1| tRNA(Ile)-lysidine synthetase [Brucella sp. BO2]
 gi|306288517|gb|EFM59869.1| tRNA(Ile)-lysidine synthetase [Brucella sp. BO2]
          Length = 448

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 133/446 (29%), Positives = 199/446 (44%), Gaps = 34/446 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS          A++VDH
Sbjct: 1   MGLSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPP-ALIAVTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V  +C +  I H ++SW + KP  GL AAAR ARY L+ + A+   A 
Sbjct: 58  KLRAESALEAENVGLLCQKHGIMHRILSWDDPKPVHGLAAAARTARYRLLVQAARDAGAD 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  
Sbjct: 118 FIVTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALREE 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AML 237
           L +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+ 
Sbjct: 178 LTRRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLF 293
            P  L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++  
Sbjct: 238 DPATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSG 297

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
             + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +
Sbjct: 298 QDAPRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFE 357

Query: 354 IGPQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP---------------- 392
           I P   ++      +    +     +  L S    EGGK    P                
Sbjct: 358 IAPPGRQELIDFLKNSGRDMESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERH 417

Query: 393 ---FSRFMTKFDLPVAYAFSISFGKV 415
              F   +   D  +A A     G+ 
Sbjct: 418 FAIFDHVLPGHDFALAQAVEARLGRA 443


>gi|170768385|ref|ZP_02902838.1| tRNA(Ile)-lysidine synthase [Escherichia albertii TW07627]
 gi|170122489|gb|EDS91420.1| tRNA(Ile)-lysidine synthase [Escherichia albertii TW07627]
          Length = 431

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 142/408 (34%), Gaps = 41/408 (10%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L+    ILVA SGG DS  LL  L     +     +   AI V H L   A   V +  
Sbjct: 8   HLLSSRQILVAFSGGLDSTVLLHQLVQWRMEN--PGVTLRAIHVHHGLSANADAWVMHCE 65

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET
Sbjct: 66  NICQQWQVPLVVERVQLAEEGLGIEAQARQARYQAFAHTL--LPGEVLVTAQHLDDQCET 123

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R     G+   G            + RP L   R ++  +  +  + W ED SN
Sbjct: 124 FLLALKRGSGPAGLSAMGEVSDFA---GTQLIRPLLARTRGELELWAHEHGLRWIEDESN 180

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252
            DD ++R  +R  V  +    L  +   F +   +     A        +    +     
Sbjct: 181 QDDTYDRNFLRLHVVPL----LQQRWPHFTEATARSAALCAEQERLLDELLADDLAHCQT 236

Query: 253 SQDILNI------DSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
           SQ  L I             ++R   A    Q  +P   ++ R+       +     C+ 
Sbjct: 237 SQGTLLITPMMTMSDARRAAIIRRWLAKLNAQ--MPSRDALVRIWQEVALAREDASPCLR 294

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
            G   I R  + LW  ++       I+       W    Q   L   L  +   +     
Sbjct: 295 FGAFEIRRYQSQLWWIKSFVGQSETIVP------WQMWQQSLELPAGLGSVQLTAGGDIR 348

Query: 364 VPSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
            P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 349 FPRADEAVSVRFKASGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 396


>gi|237816070|ref|ZP_04595066.1| tRNA(Ile)-lysidine synthetase [Brucella abortus str. 2308 A]
 gi|260755392|ref|ZP_05867740.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 6 str. 870]
 gi|260758613|ref|ZP_05870961.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 4 str. 292]
 gi|260762446|ref|ZP_05874783.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884408|ref|ZP_05896022.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 9 str. C68]
 gi|261750848|ref|ZP_05994557.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella suis bv. 5 str. 513]
 gi|237788733|gb|EEP62945.1| tRNA(Ile)-lysidine synthetase [Brucella abortus str. 2308 A]
 gi|260668931|gb|EEX55871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 4 str. 292]
 gi|260672872|gb|EEX59693.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675500|gb|EEX62321.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella abortus bv. 6 str. 870]
 gi|260873936|gb|EEX81005.1| tRNA(Ile)-lysidine synthase [Brucella abortus bv. 9 str. C68]
 gi|261740601|gb|EEY28527.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella suis bv. 5 str. 513]
          Length = 453

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 34/444 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295
             L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++    
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
           + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +I 
Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364

Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392
           P   ++      +    I     +  L S    EGGK    P                  
Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFA 424

Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415
            F   +   D  +A A     G+ 
Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448


>gi|83943921|ref|ZP_00956378.1| Probable cell cycle protein [Sulfitobacter sp. EE-36]
 gi|83845168|gb|EAP83048.1| Probable cell cycle protein [Sulfitobacter sp. EE-36]
          Length = 419

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 101/412 (24%), Positives = 164/412 (39%), Gaps = 25/412 (6%)

Query: 17  VYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
             P  +L VAVSGG DS+ LL  L+     R    I   A +VDH LR  A  E   V+ 
Sbjct: 15  PAPPPVLGVAVSGGGDSVALLHLLNDYARSRG---IALRAATVDHGLRPEAAREAAMVAA 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C  L + H  + W        L   AR+ARY L+++ A+      +   HT DD  ET 
Sbjct: 72  QCRALGVPHDTLRWTGWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHTADDLAETF 131

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G+        I     +   RP L  RR D+R+ L +  ++W +DPSN 
Sbjct: 132 VMRLGRRAGVDGLSAM---PAIFDRHGMRWHRPLLNVRRADLRAHLTRCGVTWVDDPSNE 188

Query: 196 DDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           DD F RVR+R+ +       +D  AL    +   D R  ++  +      +  V   ++ 
Sbjct: 189 DDSFARVRIRKALAVLTDLGVDSAALADVSRHLADARTALDAQMFAAARAHAHVQYGAVA 248

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
              Q +  + +     LL  + A   G    P   ++  V+  L     G  ++    + 
Sbjct: 249 MDWQALCGLPTETRRRLLTHTIAWINGATYAPRSSAVAEVLTAL--DDAGAATVQGCELR 306

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370
            + + LWI R ++ +  +    +   +WDGR++ +   D+      Q+  +A    G+  
Sbjct: 307 LKRDKLWIYRELQAVRAVAAPAD--ALWDGRWRLEPCGDAPAPNT-QTTIRALGADGLRS 363

Query: 371 IIAQR--------ALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGK 414
               R         L+S    +G + + AP       +   +       F  
Sbjct: 364 FADWRDLGVPRGVLLASPAVWQGAELVAAPLVGRSQNWQAVLERGEDAFFAA 415


>gi|222475515|ref|YP_002563932.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida]
 gi|255003502|ref|ZP_05278466.1| cell cycle protein (mesJ) [Anaplasma marginale str. Puerto Rico]
 gi|255004624|ref|ZP_05279425.1| cell cycle protein (mesJ) [Anaplasma marginale str. Virginia]
 gi|222419653|gb|ACM49676.1| cell cycle protein (mesJ) [Anaplasma marginale str. Florida]
          Length = 501

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 166/416 (39%), Gaps = 38/416 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + SL       VAVSGG DS+ LL  + ++   ++  +     ++V+H  R  A  E R+
Sbjct: 63  LNSLELSGGYAVAVSGGVDSITLLNLVAALHKTQATSRP--VVLTVNHGFRAEADHETRF 120

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V      L +   ++ W   +  +     ARE RY+L+ +     +   ++TAH   DQ 
Sbjct: 121 VQKRAVALGLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQA 180

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV M  +R     G  LSGM +  ++  ++ I RP L   R++I  +  Q+ +SW EDP
Sbjct: 181 ETVLMHLERGSGIDG--LSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDP 237

Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           SN D ++ R   R  + +     + +  L             + + V   +   L     
Sbjct: 238 SNQDPKYRRTFFRNLIAESKNPGVVVDRLCRTTSHMHRALACILHYVRSSLDYCLEFSPL 297

Query: 248 SIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305
             I + SQ++ ++   +   LL +S    GG+   P Y +   ++  +  G+     ++ 
Sbjct: 298 GFITVKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSAFWPILTKILQGQDFTPRTLH 357

Query: 306 RVVIDRRANFLW-ITRAVRNLPTLILYPE--ETTVWDGRYQFQ----------------- 345
              + +  +  + I R +  + T I      ET  WD R+  +                 
Sbjct: 358 GCKVRKEPDGNFSIVRELARIETKIGVKTIAETIQWDRRFAIKIMCTHNASAAETTSCSA 417

Query: 346 ----NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396
               N S+    +         +P  +   + +    S+P    G  +LA P+   
Sbjct: 418 KHAPNPSEETQNLYITPLGNGSLPEHLV-HVNRDVACSLPVLAHGDKVLAYPWQNH 472


>gi|265991728|ref|ZP_06104285.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995565|ref|ZP_06108122.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 3 str. Ether]
 gi|262766849|gb|EEZ12467.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 3 str. Ether]
 gi|263002684|gb|EEZ15087.1| tRNA(Ile)-lysidine synthase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 453

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 34/444 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295
             L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++    
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
           + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +I 
Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364

Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392
           P   ++      +    I     +  L S    EGGK    P                  
Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFA 424

Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415
            F   +   D  +A A     G+ 
Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448


>gi|261338814|ref|ZP_05966672.1| hypothetical protein ENTCAN_05009 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318637|gb|EFC57575.1| tRNA(Ile)-lysidine synthetase [Enterobacter cancerogenus ATCC
           35316]
          Length = 428

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 145/401 (36%), Gaps = 37/401 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV  SGG DS  LL  L           ++  AI V H L   A + V +   +C+ 
Sbjct: 14  RQLLVGFSGGLDSTVLLHRLMHWRD--REPDVQIRAIHVHHGLSPYADEWVAHCDALCAA 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   V          G+ A AR+ARYA  +   K      ++TA   DDQ ET  +  
Sbjct: 72  WGIPLHVERVVLENEGLGIEAQARKARYAAFARALKP--GEALVTAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R       GLS M +   +D    + RP L   R  + ++  Q  +SW ED SN DD +
Sbjct: 130 KRGSGP--AGLSAMPERTAFD-GTELLRPLLGETRASLEAWAQQYQLSWIEDESNQDDSY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDIL 257
           +R  +R  V    L  L  +   F +   +     A    +   L     S +  S   L
Sbjct: 187 DRNFLRLRV----LPLLTQRWGHFAEATARSAALCAEQETLLDELLSDALSDLTSSDGAL 242

Query: 258 NIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
            I        +R +A     +     ++P    + R+       +     CV +    + 
Sbjct: 243 AITPLESMTPVRRAALLRRWLAMHNAAMPSRAMLHRIWEEVAQAREDAAPCVYLNGFEVR 302

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370
           R    LW  ++  +L  ++L       W   +    L      +   +     +P+   P
Sbjct: 303 RYKGRLWWVKSTPSLTDVVLA------WPSPHDALELPYQRGTVSLTAPGHVRLPNADEP 356

Query: 371 IIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 357 VTVRFKASGVLHIVGRNGGRKLKKIWQENNVPPWLRDTTPL 397


>gi|240949808|ref|ZP_04754137.1| cell-cycle protein MesJ [Actinobacillus minor NM305]
 gi|240295725|gb|EER46420.1| cell-cycle protein MesJ [Actinobacillus minor NM305]
          Length = 423

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 155/399 (38%), Gaps = 33/399 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              LVA+SGG DS+        +L   +  K++  AI + H L   A   V +    C +
Sbjct: 23  KRFLVALSGGIDSVV-------LLYLLNQLKLELRAIHIHHGLSPNADQWVTFCQHYCQQ 75

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   V   + +  + G+ A ARE RY  I E     +  +++TAH  DDQ+ET  +  
Sbjct: 76  HAIPLCVKYVQVNGKK-GIEAEAREKRYQAIREV--REHNEVVVTAHHLDDQVETFLLAL 132

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG+        + +  N  I RP L   + DI ++   +N+SW ED SN    +
Sbjct: 133 KRGSGVKGLSAM---QVVNFSQNFPIFRPLLAISKNDILTYAKSQNLSWIEDESNQSTDY 189

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP-------KYLTVHMRSIIAI 252
           +R  +R  V    L  L  +  +F  +  +    +A           + L  +      +
Sbjct: 190 DRNFLRHKV----LPVLNEQWTQFNRMVARSCEHLANQQQLLDELLCEELAKYRDGQTLV 245

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVI 309
            QD  ++       LLR+       Q+ +P    +E++   ++  K  K   + +G  ++
Sbjct: 246 IQDFASLAKIKQQALLRLWF--SEQQMLMPSTVQLEQIIQNIILAKGDKNPEIQLGDKML 303

Query: 310 DRRANFLWITR---AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366
            R  N L+IT     V      IL  E   + +   +     D +I        +  +  
Sbjct: 304 RRYQNRLFITPIYTPVTAFSKEILQQETIILPNELGRLIRSKDEIIYQTAYKIDRLPLSE 363

Query: 367 GIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPV 404
            +        L      KE GK       +   K+ +PV
Sbjct: 364 ALQQEKLFVHLKYQGKIKEDGKTYHEEMKKIWQKYQIPV 402


>gi|52424859|ref|YP_087996.1| MesJ protein [Mannheimia succiniciproducens MBEL55E]
 gi|61216475|sp|Q65UE9|TILS_MANSM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52306911|gb|AAU37411.1| MesJ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 426

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 138/323 (42%), Gaps = 22/323 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            IL+A SGG DS  LL     +  +R     +F AI + H L   A     +  ++C + 
Sbjct: 16  KILIAFSGGLDSTALLALCKKLQENR--PHFQFRAIHIHHGLSPNADKWALHCENICRQF 73

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   V   +  K   G+ A AREARY  I+ H       ++ TAH  +DQ ET  +  +
Sbjct: 74  SIPLIVEKVRVDK-SNGIEAGAREARYHAIANHLNI--DEVLATAHHLNDQTETFLLALK 130

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+      +++++  NL I RP L+  R  +  ++  + I+W ED SN D+ ++
Sbjct: 131 RGSGVQGLSAM-QKESVVF--NLPIFRPLLQFTRAQLEDYVKSQKINWIEDESNEDNSYD 187

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQDIL 257
           R  +R  +    L  +  +   F     +          L+ + L    + I   +   L
Sbjct: 188 RNFLRNII----LPKMKTRWAHFDQAVYRAAQHCFEQTQLVNELLEDEFQKIFEKNDRTL 243

Query: 258 NIDSTLLFYLLR----VSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
           ++     +  ++    +   +   Q+++P  + +E+++   +F K        +   VI 
Sbjct: 244 SVKLFDRYSYIKQKALLRLWLARLQLAMPSQKQLEQLIRDVIFAKPDAIPQFKLANQVIR 303

Query: 311 RRANFLWITRAVRNLPTLILYPE 333
           R    L++T    +L  + +  +
Sbjct: 304 RYQQKLYLTADFADLTDVAVPLK 326


>gi|265984710|ref|ZP_06097445.1| tRNA(Ile)-lysidine synthase [Brucella sp. 83/13]
 gi|264663302|gb|EEZ33563.1| tRNA(Ile)-lysidine synthase [Brucella sp. 83/13]
          Length = 453

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 133/444 (29%), Positives = 198/444 (44%), Gaps = 34/444 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHRVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295
             L V    ++ +  D     S     L   + A+I GG+  LPG    R +ER++    
Sbjct: 245 ATLGVDAAGMMFLDADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
           + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +I 
Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364

Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392
           P   ++      +    +     +  L S    EGGK    P                  
Sbjct: 365 PPGRQELIDFLKNSGRDMESRRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFA 424

Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415
            F   +   D  +A A     G+ 
Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448


>gi|239946943|ref|ZP_04698696.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921219|gb|EER21243.1| tRNA(Ile)-lysidine synthase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 482

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 99/472 (20%), Positives = 189/472 (40%), Gaps = 78/472 (16%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L    RE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFDHQNNFSNLQERTREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     + ++  +L+  NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKY 192

Query: 200 ERVRVRR-------FVRDIDLHA------------------------------------L 216
            R  +R+       ++R +   A                                    L
Sbjct: 193 RRNVIRQKLAKGEDYIRHLSKPAYREEFKGDTERSTAAYTSVRGEALLREDSSLGSTYKL 252

Query: 217 YLKMKKFQDL-----RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---T 262
            L+  K         ++K N  +       L + +   + I +      D++  D     
Sbjct: 253 PLEFGKMSKAEIILQQLKTNKLIEDKFKPELILAIAEAVKIFEYGFAFLDLVKFDKFLNE 312

Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322
           +   ++     +  GQ     + S+E ++  +        ++   VI R  N L I R  
Sbjct: 313 VKVQIINFLLIMISGQSRAARFYSVEPILKLITQEVNFKNTLHGCVIKRIQNELLIYREF 372

Query: 323 -RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMP 381
            + LP   +  +++ +WD R+      ++L      ++   +    I   +    L ++ 
Sbjct: 373 GKKLPESKILLDKSVIWDNRFCITRNQETLNCF--VTHLLLEDYKIIKKQLDLEPLKNLS 430

Query: 382 SKEGGKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423
            K     L   P  + + K         +D  + + F +SF   F+ R   F
Sbjct: 431 CKNHNAILFTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFAPNFVSRFTHF 481


>gi|325579079|ref|ZP_08149035.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159314|gb|EGC71448.1| tRNA(Ile)-lysidine synthetase [Haemophilus parainfluenzae ATCC
           33392]
          Length = 430

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 132/322 (40%), Gaps = 26/322 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +L+A SGG DS  LL  +  +   R    +   AI + H L   A     +   +C + 
Sbjct: 17  KLLIAFSGGLDSTALLSLVKKLSEKR--PHLSLRAIHIHHGLSPNADTWTTHCQQLCEQF 74

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   +   K  +   G+ A AREARY  I +H +      ++TAH  +DQ ET ++  +
Sbjct: 75  AIPLIIEKVKV-EMHNGIEAGAREARYRAILKHIQP--DEYLVTAHHLNDQTETFFLALK 131

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G     ++ L+   + I RP L   R ++  ++ +  +SW ED SN D+ ++
Sbjct: 132 RGAGLQGLGAM-QKESQLF--GMPILRPLLSFSRYELEDYVQRETLSWVEDESNQDNHYD 188

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIAISQ--- 254
           R  +R  +    L  +  + + F                LI + L       I   Q   
Sbjct: 189 RNFLRNQI----LPEIRQRWRHFDHAVQHAAQHCFEQQQLINELLQTCFEQHILEDQKQF 244

Query: 255 ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVV 308
              + L         LLR+  A    QI++P    +  ++   +  K+       +G  +
Sbjct: 245 SLVNFLEYSLQKQTTLLRMWLA--KNQIAMPTQVQLMHIIDDVIQAKADASPQFQLGEHI 302

Query: 309 IDRRANFLWITRAVRNLPTLIL 330
           I R   +L++T    +L    L
Sbjct: 303 IRRYQQYLYLTGKFADLSKTCL 324


>gi|261325734|ref|ZP_05964931.1| tRNA(Ile)-lysidine synthase [Brucella neotomae 5K33]
 gi|261301714|gb|EEY05211.1| tRNA(Ile)-lysidine synthase [Brucella neotomae 5K33]
          Length = 453

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 132/423 (31%), Positives = 196/423 (46%), Gaps = 18/423 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295
             L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++    
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
           + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +I 
Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364

Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSI 410
           P   ++      +    I     +  L S    EGGK    PF   +   + P       
Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLAFVPF---LPGAEWPQGVHIER 421

Query: 411 SFG 413
            F 
Sbjct: 422 HFA 424


>gi|163745828|ref|ZP_02153187.1| PP-loop family protein [Oceanibulbus indolifex HEL-45]
 gi|161380573|gb|EDQ04983.1| PP-loop family protein [Oceanibulbus indolifex HEL-45]
          Length = 423

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/393 (24%), Positives = 158/393 (40%), Gaps = 23/393 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGG DSM LL  LH + +       +  A++VDH LR  A  E  +V+    
Sbjct: 25  PPRLGVAVSGGGDSMALLSLLHGLCAA---AGTQLEAVTVDHGLRPEAATEAAFVAHHAG 81

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L + H  + W+    Q  L  AAREARY L+++ A   +   I   HT DDQ ETV MR
Sbjct: 82  ALGLPHETLQWRGWDGQGNLQNAAREARYRLMADWAARRDLPCIALGHTADDQAETVLMR 141

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G+              +   RP L  RRE +R +L +  + W +DPSN D R
Sbjct: 142 LARRSGVDGLSAM---APQSRRHGVTWLRPLLFARRESLRDYLRRAGLEWVDDPSNDDPR 198

Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           + R++ R+ +       ID+  L          R  +           L +   +++  S
Sbjct: 199 YARIQTRQSLAALDPLGIDVETLAEVASNMATARDALERQTERAAGDILRMEGGALVMRS 258

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           +        +   L+  +     G    P    +  ++  L  G+   +   + ++ R  
Sbjct: 259 EAFFAEPEEIRRRLMIRALGKISGSAYSPRRGPVAALIAGLAEGQAATLDGCQALVRR-- 316

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL-----IQIGPQSYRKADVPSGI 368
             +W+ R    +  L +      +WD R++      +        +GP+   +   P+  
Sbjct: 317 GEIWLFREYNAVRDLRVPVNH--LWDKRWRAVPSGGAPEGAELRALGPEGLAQC--PNWR 372

Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400
                +  L S P+   G  LL AP +    K+
Sbjct: 373 SLGRPRAMLLSTPAIWQGAQLLAAPLAGLDEKW 405


>gi|229586277|ref|YP_002844778.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5]
 gi|259533753|sp|C3PM75|TILS_RICAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|228021327|gb|ACP53035.1| mesJ; tRNA(Ile)-lysidine synthetase [Rickettsia africae ESF-5]
          Length = 478

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 184/468 (39%), Gaps = 74/468 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + 
Sbjct: 20  SKISIAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNS 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R 
Sbjct: 77  LNRKHYSLSFYHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R+    G+  S +     +  N+ I RP     +  +  +L++ NI W ED SN+ D++
Sbjct: 137 ERNSGIFGLSSSNIN----WYNNIQIIRPLYNIPKSKLVEYLVRHNIKWFEDESNSSDKY 192

Query: 200 ERV-----------RVRRFVRDIDLHALYLKMKKFQDL---------------------- 226
            R             +R F + +         ++                          
Sbjct: 193 RRNVIRQKLAKGADYIRHFSKPVYREEFKGDTERSTAAYTLVREDASTGTASKLSLEAKC 252

Query: 227 -----------RVKVNNAVAMLIPKYLTVHMRSIIAISQ------DILNIDS---TLLFY 266
                      ++K N  +       L   +   + I +      D++  D     +   
Sbjct: 253 GKMSKAAIISQQLKTNKLIENEFKPELISAIAEAVKIFEYGFAFLDLVKFDKFSNEVKVQ 312

Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNL 325
           ++     I  GQ  +  + S+E ++  +        ++   +I R  N L I R   + L
Sbjct: 313 IINFLLIIISGQSRVARFYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKL 372

Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385
           P   +  +++ +WD R+      ++       ++        I   +    L ++  K  
Sbjct: 373 PESKILLDKSVIWDNRFCITKNQETPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNH 430

Query: 386 GKPLLA-PFSRFMTK---------FDLPVAYAFSISFGKVFIPRLPFF 423
              LL  P  + + K         +D  + + F +SF   F+ R   F
Sbjct: 431 NAVLLTLPIIKILEKVIAIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 477


>gi|290473675|ref|YP_003466547.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii SS-2004]
 gi|289172980|emb|CBJ79751.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus bovienii SS-2004]
          Length = 449

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 163/431 (37%), Gaps = 33/431 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG----KIKFSAI 56
           M  + I  +   +  L     +LV  SGG DS  LL  L  +      G    +I+  AI
Sbjct: 1   MINTHIPLLTMLIDQLGRHKKVLVGFSGGLDSTVLLHLLVQLRYQSHSGVIRDQIELRAI 60

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
            + H L   A   V +   +C+  ++   V        Q G+ AAAR+ARY       + 
Sbjct: 61  HIHHGLNPKADKWVEHCRQICADWKVDFRVEKVSLDIRQNGIEAAARDARYQAFQHELQQ 120

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               +++TA   DDQ ET  +  +R     G+       + +      + RP L   R +
Sbjct: 121 --GEILVTAQHLDDQAETFLLALKRGSGPAGL---SSMPSSMPFSGTTLIRPLLNASRAE 175

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           + ++   + + W ED SN DDR++R  +R  +  + L+  +    +       +      
Sbjct: 176 LETYAQTQRLQWIEDDSNQDDRYDRNFLRLHIMPL-LNQRWPHFPQSASRSASLCGEQEQ 234

Query: 237 LIPKYLTVHMRSI------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           L+ + L   +  +      IAIS  +++        LLR      G  + +P    ++++
Sbjct: 235 LLDELLNESLNELITPEGAIAISP-LVDCSEAKRNALLRRWFNQHG--VKMPAREQLQKI 291

Query: 291 M---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE---ETTVWDGRYQF 344
                  +        +G+  + R    LW+    ++L   +L  +   E  + DG    
Sbjct: 292 WSEVALSRQDAEPRFRLGQHDVRRYRQQLWLVPQCQSLAGTLLEWDIAQELRLPDGLGML 351

Query: 345 QNLSDSLIQI-GPQSYRKADVPSGIP---PIIAQRALSSMPSKEGGKPLLAPFSRFMTK- 399
               +S I +  P    +  +  G+     I+ +R           +  +AP+ R  T  
Sbjct: 352 VLSEESGINVRMPDRNERVTIRFGVQGNISIVGRRHSRHSKKLW-QELGIAPWLRERTPL 410

Query: 400 --FDLPVAYAF 408
             +D  +  A 
Sbjct: 411 LYYDEKLVAAL 421


>gi|83954494|ref|ZP_00963205.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1]
 gi|83840778|gb|EAP79949.1| Probable cell cycle protein [Sulfitobacter sp. NAS-14.1]
          Length = 419

 Score =  255 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 103/412 (25%), Positives = 166/412 (40%), Gaps = 25/412 (6%)

Query: 17  VYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
             P  +L VAVSGG DS+ LL  L+     R    I   A +VDH LR  A  E   V+ 
Sbjct: 15  PAPPPVLGVAVSGGGDSVALLHLLNDYARSRG---IALRAATVDHGLRPEAAREAAMVAA 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C  L + H  + W        L   AR+ARY L+++ A+      +   HT DD  ET 
Sbjct: 72  QCRALGVPHDTLMWTGWDHSGNLQNEARKARYRLLADWARGQGIGAVCIGHTADDLAETF 131

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R     G+        I     +   RP L  RR D+R+ L QR ++W +DPSN 
Sbjct: 132 VMRLGRRAGVDGLSAM---PAIFDRHGMRWHRPLLNARRADLRAHLTQRGVTWVDDPSNE 188

Query: 196 DDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           DD F RVR+R+ +       +D  AL    +   D R  ++  +      +  V   ++ 
Sbjct: 189 DDSFARVRIRKALAVLTDLGVDSAALADVSRHLADARTALDAQMFAAARAHAHVQCGAVA 248

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
              Q + ++ +     LL  + A   G    P   ++  V+  L     G  ++    + 
Sbjct: 249 MDWQALCDLPTETRRRLLTHTIAWINGATYAPRSSAVAEVLTAL--DDAGAATVQGCELR 306

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370
            + + LWI R ++ +  +    +   +WDGR++ +   D+      Q+  +A    G+  
Sbjct: 307 LKHDKLWIYRELQAVRAVDAPAD--ALWDGRWRLEPCGDTPAPDT-QTMIRALGAEGLRS 363

Query: 371 IIAQR--------ALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGK 414
               R         L+S    +G + + AP       +   +       F  
Sbjct: 364 FADWRDLGVPRGVLLASPAVWQGAELVAAPLVGRSQNWQAVLERGEDAFFAA 415


>gi|261754101|ref|ZP_05997810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella suis bv. 3 str. 686]
 gi|261743854|gb|EEY31780.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Brucella suis bv. 3 str. 686]
          Length = 453

 Score =  255 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 134/444 (30%), Positives = 199/444 (44%), Gaps = 34/444 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+   + F   L     ++ AVSGGSDS+GLL  L   LS      +   A++VDH L
Sbjct: 8   LSPVNIFKPF--GLGRAKAVIAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E   V  +C +  I H V+SW + KP  GL AAAR ARY L+ + A+   A  I
Sbjct: 65  RAESALEAENVGLLCQKHGIMHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFI 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT +DQ+ET  MR  R    +  GL+ M    L + ++ ++RP L   R+ +R  L 
Sbjct: 125 VTGHTENDQIETFLMRKARSGHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELT 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIP 239
           +R I+W +DPSN +  +ER RVR  V  + D   +  ++ +    R + N A+  A+  P
Sbjct: 185 RRGIAWVDDPSNANIDYERPRVRLGVAAEADGQEVLEQIAQAGAARERDNAALVEALADP 244

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLK 295
             L V    ++ ++ D     S     L   + A+I GG+  LPG    R +ER++    
Sbjct: 245 ATLGVDAAGMMFLNADCYAALSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQD 304

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
           + +R  V    +    +       R  RNLP L L P +  VWDGR+ F N      +I 
Sbjct: 305 APRRLTVFGALIERGEKGAPHRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIA 364

Query: 356 PQSYRKA-----DVPSGIPPIIAQRALSSMPSKEGGKPLLAP------------------ 392
           P   ++      +    I     +  L S    EGGK    P                  
Sbjct: 365 PPGRQELIDFLKNSGRDIESRRCEALLISPALYEGGKLASVPFLPGAEWPQGVHIERHFA 424

Query: 393 -FSRFMTKFDLPVAYAFSISFGKV 415
            F   +   D  +A A     G+ 
Sbjct: 425 IFDHVLPGHDFALAQAVEARLGRA 448


>gi|307944549|ref|ZP_07659889.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4]
 gi|307772298|gb|EFO31519.1| tRNA(ile)-lysidine synthase [Roseibium sp. TrichSKD4]
          Length = 446

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 95/397 (23%), Positives = 168/397 (42%), Gaps = 23/397 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     I + VSGG+DS+ LL  +      +S+       ++VDH LR  +  E R+VSD
Sbjct: 31  LSPYKSITLGVSGGADSLALLFLVVEWKKRQSWSG-ALDVVTVDHGLRAESAKEARFVSD 89

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +C  L++ H+++ W+     + L   AREARYALI+EH +  ++  ++  H  DDQ ET 
Sbjct: 90  ICRSLQVRHTILEWRPEGALSNLQGRAREARYALIAEHMEESSSEALVLGHHLDDQAETF 149

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R  R     G+      +       L I RP L   ++ +   L  R  SW ED SN 
Sbjct: 150 LDRLTRGSGVYGLSAMASVEHQG-PNGLQIVRPLLSLSKDQLVLSLEARGQSWVEDQSNE 208

Query: 196 DDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
            + ++RVR+R+ ++      +    L    K+ +  R  +   V+      +T H    +
Sbjct: 209 VEAYKRVRLRKLLKGLSDEGLSRDGLAETAKRMRRAREALEEWVSSFWSTRVTQHPAGPL 268

Query: 251 AISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           AI  D   N+   +   +L  + +   G         +E +   L+   +   ++   ++
Sbjct: 269 AICFDAWQNLPLEMRLRVLSQALSATAGMEYPSRLSKLEALEADLQKQAQLKKTMSGCIV 328

Query: 310 DRRANFLWITRAV--RNLPTLILYPEETT----VWDGRYQFQNLSDSLIQIGPQSYRKAD 363
            +    L + + V    +P++ L          +WDGR++   L D   ++G        
Sbjct: 329 SKTVRHLLVWKEVGRSEIPSVGLAKFMNGCRRRIWDGRFEIT-LEDQFGELGDAMSIGQL 387

Query: 364 VPSGIP-------PIIAQRAL-SSMPSKEGGKPLLAP 392
           + +  P           + A  +S+   E  + LL P
Sbjct: 388 ITAPKPEEEFADCAPWPKEAFRASLAIYENERLLLVP 424


>gi|219871527|ref|YP_002475902.1| cell-cycle protein MesJ [Haemophilus parasuis SH0165]
 gi|219691731|gb|ACL32954.1| cell-cycle protein MesJ [Haemophilus parasuis SH0165]
          Length = 422

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 21/304 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           + +SGG DS+ LL         R    +K  AI + H L   A     +   +C +  I 
Sbjct: 21  IGLSGGVDSVVLLHLFAQ---ARQALNLKLRAIHIHHGLSPNADSWATFCEQLCEQWAIP 77

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
            +V   +    Q GL A AR ARY +I +H +     ++ TAH  DDQ+ET ++  +R  
Sbjct: 78  LTVCKVQVQGKQ-GLEANARTARYQVIQQHIQRN--EMLATAHHLDDQVETFFLALKRGS 134

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+G       + +  N+ I RP L   + DI ++  Q  + W ED SN +  F+R  
Sbjct: 135 GIQGLGAM---QAVSFLQNIAIFRPLLSFNKTDILAYAEQYQLEWIEDESNFNTDFDRNF 191

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-VHMRSIIAISQDILNIDST 262
           +R+      L  L  + ++F  +  + +   A         +H      +    L+I   
Sbjct: 192 LRQT----ALPLLNQRWQQFNQMVARSSQHCAEQQQLIEELLHPELASRLQNGGLDITGF 247

Query: 263 LLFYLLRVS----AAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRANF 315
             F LL+        +    +++P    +E+++  L   K+ K   V + + +I R    
Sbjct: 248 EHFSLLKQQQLVRLWLAQAHLAMPSVAQLEQIIQHLILAKADKNPQVKLEQHLIRRYQQQ 307

Query: 316 LWIT 319
           ++IT
Sbjct: 308 IFIT 311


>gi|283783975|ref|YP_003363840.1| tRNA(Ile)-lysidine synthase [Citrobacter rodentium ICC168]
 gi|282947429|emb|CBG86975.1| tRNA(Ile)-lysidine synthase [Citrobacter rodentium ICC168]
          Length = 432

 Score =  254 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 145/403 (35%), Gaps = 31/403 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           SL     ILVA SGG DS  LL  L    + R   +++  AI + H L   A + V +  
Sbjct: 9   SLFNRPQILVAFSGGLDSTVLLHQLVQWRALR--PELRLRAIHIHHGLSPHADEWVAHCE 66

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            VC+R ++   V   + +    G+ A AR+ARY   ++        ++ TA   DDQ ET
Sbjct: 67  AVCARWQVPLMVRRVQLADEGLGIEALARQARYQAFAQALAP--GEILATAQHLDDQCET 124

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M +   +  +  + RP L   R  +  +  + ++ W ED SN
Sbjct: 125 FLLALKRGSGP--AGLSAMAEVSAFADS-RLVRPLLTQSRTALEQWAREHSLCWIEDESN 181

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252
            DD ++R  +R  V    L  L  +   F     +     A        +    +     
Sbjct: 182 QDDAYDRNFLRLRV----LPLLQQRWPHFAQATARSAALCAEQESLLDELLAEELSGCMT 237

Query: 253 SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305
           +   L +   +  + +R +A     +      +P    + R+       +     C+  G
Sbjct: 238 TNGTLRLSPLMAMHDVRRAALIRRWLAARNAPMPSRDGLARIWQEVALAREDASPCLCFG 297

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              + R    LW  ++       +L   +   W    +      +   I     RK    
Sbjct: 298 EYEVRRYQGQLWWVKSRPGQSETVLRWAD---WQTPLRLPAGLGTAALIPGGELRKPLDD 354

Query: 366 SGIPPIIAQRALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +        +  +  + GG+ L        + P+ R  T  
Sbjct: 355 EPVTLRFKAPGMLHIVGRHGGRKLKKIWQELGIPPWRRDTTPL 397


>gi|168245005|ref|ZP_02669937.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194447470|ref|YP_002044226.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|254789044|sp|B4TK64|TILS_SALHS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|194405774|gb|ACF65993.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205336227|gb|EDZ22991.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 430

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 145/401 (36%), Gaps = 39/401 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R 
Sbjct: 15  RILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCERW 72

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +
Sbjct: 73  QVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALK 130

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+   G C          + RP LR  R+ +  + ++  + W ED SN DD ++
Sbjct: 131 RGSGPAGLSAMGECSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD 187

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  L
Sbjct: 188 RNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTL 242

Query: 258 NIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVID 310
            +   +L   +R +A     +      +P   ++ER+       +     C+  G   I 
Sbjct: 243 RLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIR 302

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370
           R  + LW       + T+    E T VW        L   L  +      +   P     
Sbjct: 303 RYQSQLWW------IKTVAGQHETTVVWPVWQTPLALPAGLGTVQLVPGGELRRPREEES 356

Query: 371 IIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 357 VSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|308185759|ref|YP_003929890.1| cell cycle protein [Pantoea vagans C9-1]
 gi|308056269|gb|ADO08441.1| cell cycle protein [Pantoea vagans C9-1]
          Length = 466

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 151/412 (36%), Gaps = 38/412 (9%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            F   L   A ++VA SGG DS  LL  L  +   +   +    A+ V H L   A    
Sbjct: 33  AFDALLQPDAALVVAFSGGLDSTVLLHQL--LGWQQQHPQSHLRALHVHHGLSPNADAWA 90

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +   +C + ++   V+       + G+ AAAR ARY  +S   K     +++TA   DD
Sbjct: 91  AHCQTICEQWQLRCDVLRVTVDGRENGIEAAARTARYQALSAALKP--GEILLTAQHLDD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET  +  +R     G+        +       + RP L   R+ + ++     + W +
Sbjct: 149 QCETFLLALKRGSGPAGLAAMPSSRML---GTHQLVRPLLNQSRQSLEAYADVHQLVWID 205

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMR 247
           D SN D R++R  +R+ +    L  LY +   F +       + +    L+ + L   + 
Sbjct: 206 DESNQDLRYDRNFLRQRL----LPELYQRWPHFAEATARSAALCSEQEQLLDELLAGQLA 261

Query: 248 SIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299
            +I          ++N+ +     LLR   A  GG   +P   +++R+   ++  +   +
Sbjct: 262 ELIQPDGSLYFPPLMNMSTLRANALLRRWIAGQGGA--MPSRDALKRIRDEVMASREDAQ 319

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS- 358
             +  G+  + R    L+       LP      +    W    Q  +L  +L  +     
Sbjct: 320 PRLRFGQAELRRFRQQLYW------LPLFTSLRDTELAWPDIRQPLSLPQNLGTLRASMS 373

Query: 359 ---YRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYA 407
               R       I      +    +  + GG+       +   +  +P    
Sbjct: 374 QSLLRYPLPDEQISVRFHAQGQVHLVGRNGGR----EMKKLWQELQIPPWQR 421


>gi|167856269|ref|ZP_02479001.1| tRNA(Ile)-lysidine synthase [Haemophilus parasuis 29755]
 gi|167852593|gb|EDS23875.1| tRNA(Ile)-lysidine synthase [Haemophilus parasuis 29755]
          Length = 422

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 21/304 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           + +SGG DS  LL         R    +K  AI + H L   A     +   +C +  I 
Sbjct: 21  IGLSGGVDSAVLLHLFAQ---ARQALNLKLRAIHIHHGLNPNADSWATFCEQLCEQWAIP 77

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
            +V   +    Q GL A AR ARY  I +H +     ++ TAH  DDQ+ET ++  +R  
Sbjct: 78  FTVCKVQVQGKQ-GLEANARTARYQAIQQHIQRN--EMLATAHHLDDQVETFFLALKRGS 134

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+G       + +  N+ I RP L   + DI ++  Q  + W ED SN +  F+R  
Sbjct: 135 GIQGLGAM---QAVSFLQNIAIFRPLLSFNKTDILAYAEQHQLEWIEDESNFNTDFDRNF 191

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-VHMRSIIAISQDILNIDST 262
           +R+      L  L  + ++F  +  + +   A         +H      +    L+I   
Sbjct: 192 LRQT----ALPLLNQRWQQFNQMVARSSQHCAEQQQLIEELLHPELASRLQNGGLDITGF 247

Query: 263 LLFYLLRVS----AAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRANF 315
             F LL+        +    +++P    +E+++  L   K+ K   V + + +I R    
Sbjct: 248 EHFSLLKQQQLVRLWLAQAHLAMPSVAQLEQIIQHLILAKADKNPQVKLEQHLIRRYQQQ 307

Query: 316 LWIT 319
           ++IT
Sbjct: 308 IFIT 311


>gi|189184491|ref|YP_001938276.1| MesJ protein [Orientia tsutsugamushi str. Ikeda]
 gi|226695543|sp|B3CUJ5|TILS_ORITI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|189181262|dbj|BAG41042.1| MesJ protein [Orientia tsutsugamushi str. Ikeda]
          Length = 441

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 148/340 (43%), Gaps = 20/340 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +AVSGGSDS+ L+  L    +++  G+I    +++DH LR  +  E  YVS +C
Sbjct: 19  KNPKLAIAVSGGSDSLALM-LLVKHWNEKVKGEITI--LTIDHHLRSESTSEADYVSSIC 75

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             +++ H  + W +      + A AR+ARY L++ + +  +   ++T H  DD +E  ++
Sbjct: 76  QNIKLQHVTLHWIHKGITGNIQAQARKARYQLLTNYCQEHDILHLITGHHADDIVENFFI 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+    +     +  N+ I RP     ++D++ +L Q+NI W  DPSN+ +
Sbjct: 136 RLLRGAGLAGLSSHNL----FFVNNVRIIRPLFNITKQDLKKYLEQQNIKWINDPSNSSN 191

Query: 198 RFERVRVRRFVR------------DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           ++ R +VR  ++            ++    + L           VNN +   +   + ++
Sbjct: 192 KYLRTQVRDLLKSMLISFQHNFTVELLKKRIMLSQMHLTQALESVNNEIIHYVVHVVKIY 251

Query: 246 MRSIIAISQDILNIDSTLLFY-LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                 I + +    S    Y +L     I G     P + S++R+ L          ++
Sbjct: 252 SAGFAVIDRKLFKKASPEARYAILSYLLMIVGANTKPPRFSSLQRISLHDIQEYNTYKTL 311

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344
              +++    ++ I R       +      + VWD R++ 
Sbjct: 312 HGCIVEYSIEYIIIYREFGRCYPISQVVSNSVVWDYRFKV 351


>gi|317493166|ref|ZP_07951589.1| PP-loop family protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918826|gb|EFV40162.1| PP-loop family protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 439

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 94/403 (23%), Positives = 162/403 (40%), Gaps = 30/403 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
              L   + ++VA SGG DS  LL AL  +    +F  ++  A+ V H L   A   V +
Sbjct: 11  ASKLQGRSQLMVAFSGGLDSTVLLHALAQLRMQ-NFPHLQLRAVHVHHGLSRYADLWVDH 69

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              VC + ++   V+  K    ++G+ AAAR+ARY  I++         ++TA   DDQ 
Sbjct: 70  CESVCRQWQVPLKVLRVKVDSQRSGVEAAARDARYHAIADEISHH--ETLLTAQHLDDQC 127

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R       GLS M   + +     + RP L   R  +  +    ++ W ED 
Sbjct: 128 ETFLLALKRGSGP--TGLSAMASHMPFFSTEQL-RPLLDISRAQLEEYAANYDLKWVEDD 184

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN DDRF+R  +R  V    +  L  +   F +   +  +  A        + + S+ ++
Sbjct: 185 SNQDDRFDRNFLRLRV----IPNLRDRWPHFPEAVARSASLCAEQEQLLDELLLESLQSL 240

Query: 253 --SQDILNIDSTLLFY------LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
               D LNID  L         LLR   A  G  + +P    ++ +       +      
Sbjct: 241 MSEDDSLNIDGLLPMSEAKRYALLRRWIACFG--VMMPTREQLQLLWSEVAMAREDAEPQ 298

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
           + +G+  I R    L++      LP L    ++   WD R +  +L D L ++   S   
Sbjct: 299 LQLGKSQIRRYRQHLYL------LPPLRSLKDQVIAWDPR-ESLSLPDGLGELQLGSRGI 351

Query: 362 ADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404
                     ++ R  +    +  G+    P  +   + ++P 
Sbjct: 352 CVRAPKFDEAVSIRFAAHGTLRIIGRRHSRPIKKIWQEHNIPP 394


>gi|227357232|ref|ZP_03841589.1| PP-loop superfamily ATPase [Proteus mirabilis ATCC 29906]
 gi|227162495|gb|EEI47484.1| PP-loop superfamily ATPase [Proteus mirabilis ATCC 29906]
          Length = 441

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 154/401 (38%), Gaps = 31/401 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +    HILV  SGG DS  LL  L  +        ++ +AI V H L   A D + + 
Sbjct: 14  RQIGSHTHILVGFSGGVDSTVLLHGLVCLRDKYQLP-LELTAIYVHHGLNSKADDWLTHC 72

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C   +++      + +  + G+   AREARY    ++ +     +++TA   DDQ E
Sbjct: 73  EHFCHNWQVSFISERVQVNGKEGGIEQGAREARYQAYRQYLQPNQ--VLVTAQHQDDQAE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M   + ++   ++ RP L   RE I ++  +  + W ED S
Sbjct: 131 TFLLALKRGSGP--AGLSSMPAKMPFEQG-YLLRPLLNITREQIEAYAHEHGLLWIEDDS 187

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMRSII 250
           N DDR++R  +R  V  +    L  +   F         +      L+ + L V ++ +I
Sbjct: 188 NQDDRYDRNFLRLHVMPL----LTQRWPHFSQAVTRSAALCGEQEALLDELLDVELQQLI 243

Query: 251 AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302
              Q +               LLR   A C    S+P    + R+       K+     +
Sbjct: 244 DEHQSLDINLLSRCSEIKRNALLRRWFAKC--NKSMPSRSQLSRLWQEVALAKADAEPRL 301

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYP---EETTVWD--GRYQFQNLSDSLIQIGPQ 357
              +  + R    L++   +  L   ++     +   + +  G       S   I   P 
Sbjct: 302 RFFQDEVRRYQQRLYLVPVMEELTDRVIEWSLSQPLILPNQLGILAVSRDSGKTICRAPL 361

Query: 358 SYRKADVPSGIPPIIAQ---RALSSMPSKEGGKPLLAPFSR 395
           +  K  V  G+     +   R L+    K   +  +AP+ R
Sbjct: 362 ADEKVTVRFGLTASSLRIVGRNLARSSKKIWQELNIAPWQR 402


>gi|238759930|ref|ZP_04621084.1| tRNA(Ile)-lysidine synthase [Yersinia aldovae ATCC 35236]
 gi|238701837|gb|EEP94400.1| tRNA(Ile)-lysidine synthase [Yersinia aldovae ATCC 35236]
          Length = 445

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 87/330 (26%), Positives = 140/330 (42%), Gaps = 23/330 (6%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG DS  LL  L  +  +    ++K  AI + H L   A   V++  
Sbjct: 12  QLGDHRHVLVGFSGGLDSSVLLHLLVCL-RELLIPELKVRAIHIHHGLNPLADSWVKHCQ 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C + ++   VV  K    Q G+ AAAR ARY   S H       +++TA   DDQ ET
Sbjct: 71  RQCEQWQVPLEVVRVKIDSRQNGVEAAARTARYQAFSSHMAA--DEVLLTAQHLDDQCET 128

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLSGM  ++ +  +  + RP L   RE + ++   + +SW ED SN
Sbjct: 129 FLLALKRGSGP--AGLSGMAASLPFAHS-QLLRPLLAFSREMLENYACAQQLSWIEDDSN 185

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIA 251
            DDRF+R  +R  V    L  LY +   F     +   +      L+ + L  +++ +  
Sbjct: 186 QDDRFDRNFLRLRV----LPLLYQRWPHFAQSTARSAGLCAEQEQLLDELLADNLQQLQR 241

Query: 252 IS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
                  + +L         LLR   A  G   S+P    ++R+ L     +      + 
Sbjct: 242 PDGSLSIEGLLLASEVKRAALLRRWLAGLG--ASMPSQNQLQRLWLEVAMARQDAEPQLM 299

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPE 333
           +G   + R   +L++   +  + T  L  E
Sbjct: 300 LGAYQVRRFRQYLFLLSPLTEIKTPHLPWE 329


>gi|61216416|sp|Q5P9R1|TILS_ANAMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 466

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 165/416 (39%), Gaps = 38/416 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + SL       VAVSGG DS+ LL  + ++   ++  +     ++ +H  R  A  E R+
Sbjct: 28  LNSLELSGGYAVAVSGGVDSITLLNLVAALHKTQATSRP--VVLTGNHGFRAEADHETRF 85

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V      L +   ++ W   +  +     ARE RY+L+ +     +   ++TAH   DQ 
Sbjct: 86  VQKRAVALGLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQA 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV M  +R     G  LSGM +  ++  ++ I RP L   R++I  +  Q+ +SW EDP
Sbjct: 146 ETVLMHLERGSGIDG--LSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDP 202

Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           SN D ++ R   R  + +     + +  L             + + V   +   L     
Sbjct: 203 SNQDPKYRRTFFRNLIAESKNPGVVVDRLCRTTSHMHRALACILHYVRSSLDYCLEFSPL 262

Query: 248 SIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305
             I + SQ++ ++   +   LL +S    GG+   P Y +   ++  +  G+     ++ 
Sbjct: 263 GFITVKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSAFWPILTKILQGQDFTPRTLH 322

Query: 306 RVVIDRRANFLW-ITRAVRNLPTLILYPE--ETTVWDGRYQFQ----------------- 345
              + +  +  + I R +  + T I      ET  WD R+  +                 
Sbjct: 323 GCKVRKEPDGNFSIVRELARIETKIGVKTIAETIQWDRRFAIKIMCTHNASAAETTSCSA 382

Query: 346 ----NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396
               N S+    +         +P  +   + +    S+P    G  +LA P+   
Sbjct: 383 KHAPNPSEETQNLYITPLGNGSLPEHLV-HVNRDVACSLPVLAHGDKVLAYPWQNH 437


>gi|56417150|ref|YP_154224.1| cell cycle protein [Anaplasma marginale str. St. Maries]
 gi|56388382|gb|AAV86969.1| cell cycle protein [Anaplasma marginale str. St. Maries]
          Length = 501

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 165/416 (39%), Gaps = 38/416 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + SL       VAVSGG DS+ LL  + ++   ++  +     ++ +H  R  A  E R+
Sbjct: 63  LNSLELSGGYAVAVSGGVDSITLLNLVAALHKTQATSRP--VVLTGNHGFRAEADHETRF 120

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V      L +   ++ W   +  +     ARE RY+L+ +     +   ++TAH   DQ 
Sbjct: 121 VQKRAVALGLDCEILRWNRHRTSSKSQETAREIRYSLLHQWCTEHSVKFLLTAHNKSDQA 180

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV M  +R     G  LSGM +  ++  ++ I RP L   R++I  +  Q+ +SW EDP
Sbjct: 181 ETVLMHLERGSGIDG--LSGMHERSVFG-DITIYRPLLGFTRQEILEYATQKQLSWVEDP 237

Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           SN D ++ R   R  + +     + +  L             + + V   +   L     
Sbjct: 238 SNQDPKYRRTFFRNLIAESKNPGVVVDRLCRTTSHMHRALACILHYVRSSLDYCLEFSPL 297

Query: 248 SIIAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305
             I + SQ++ ++   +   LL +S    GG+   P Y +   ++  +  G+     ++ 
Sbjct: 298 GFITVKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSAFWPILTKILQGQDFTPRTLH 357

Query: 306 RVVIDRRANFLW-ITRAVRNLPTLILYPE--ETTVWDGRYQFQ----------------- 345
              + +  +  + I R +  + T I      ET  WD R+  +                 
Sbjct: 358 GCKVRKEPDGNFSIVRELARIETKIGVKTIAETIQWDRRFAIKIMCTHNASAAETTSCSA 417

Query: 346 ----NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396
               N S+    +         +P  +   + +    S+P    G  +LA P+   
Sbjct: 418 KHAPNPSEETQNLYITPLGNGSLPEHLV-HVNRDVACSLPVLAHGDKVLAYPWQNH 472


>gi|197286113|ref|YP_002151985.1| tRNA(Ile)-lysidine synthase [Proteus mirabilis HI4320]
 gi|259533731|sp|B4F252|TILS_PROMH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|194683600|emb|CAR44491.1| tRNA(Ile)-lysidine synthase [Proteus mirabilis HI4320]
          Length = 441

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 23/330 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +    HILV  SGG DS  LL  L  +        ++ +AI V H L   A D + + 
Sbjct: 14  RQIGSHTHILVGFSGGVDSTVLLHGLVCLRDKYQLP-LELTAIYVHHGLNSKADDWLTHC 72

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C   +++      + +  + G+   AREARY    ++ +     +++TA   DDQ E
Sbjct: 73  EHFCHNWQVSFISERVQVNGKEGGIEQGAREARYQAYRQYLQPNQ--VLVTAQHQDDQAE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M   + ++   ++ RP L   RE I ++  +  + W ED S
Sbjct: 131 TFLLALKRGSGP--AGLSSMPAKMPFEQG-YLLRPLLNITREQIEAYAHEHGLLWIEDDS 187

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMRSII 250
           N DDR++R  +R  V  +    L  +   F         +      L+ + L V ++ +I
Sbjct: 188 NQDDRYDRNFLRLHVMPL----LTQRWPHFSQAVTRSAALCGEQEALLDELLDVELQQLI 243

Query: 251 AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302
              Q +               LLR   A C    S+P    + R+       K+     +
Sbjct: 244 DEHQSLDINLLSRCSEIKRNALLRRWFAKC--NKSMPSRSQLSRLWQEVALAKADAEPRL 301

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYP 332
              +  + R    L++   +  L   ++  
Sbjct: 302 RFFQDEVRRYQQRLYLVPVMEELTDRVIEW 331


>gi|37524690|ref|NP_928034.1| tRNA(Ile)-lysidine synthetase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|61216585|sp|Q7N8N0|TILS_PHOLL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|36784115|emb|CAE12984.1| Putative cell cycle protein MesJ [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 442

 Score =  253 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 156/403 (38%), Gaps = 27/403 (6%)

Query: 10  RFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           R FV   + L     ILV  SGG DS  LL  L +  +  +  KI+  AI + H L   A
Sbjct: 7   RLFVTLAKQLGEYKKILVGFSGGLDSSVLLHLLVNWRNQHN-QKIQLRAIHIHHGLNLKA 65

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              + +   +C   ++            Q G+ AAAR+ARY +     +     +++TA 
Sbjct: 66  DQWIEHCQLICDDWQVEFHSARVTIDARQKGIEAAARDARYQVFKSELQK--DEVLVTAQ 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ET  +  +R     G+       +I    +  + RP L   R ++  +  +  +
Sbjct: 124 HLDDQAETFLLALKRGSGPAGLASM---PSIAVFADTLLLRPLLDYSRNELEKYASKHRL 180

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           +W ED SN DDR++R  +R  +  + L+  +    K       +      L+ + L   +
Sbjct: 181 NWIEDDSNQDDRYDRNFLRLHIMPL-LNQRWSHFPKAAARSASLCGEQEQLLDELLNESL 239

Query: 247 RSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298
           + +I          +          LLR      G  + +P    + R+       ++  
Sbjct: 240 KELITQDGALGIVSLAVCSEAKRNALLRRWFGYHG--MKMPSREQLNRLWYEVALARTDA 297

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE--ETTVWDGRYQFQNLSDSLIQIG- 355
              +  G+  + R    LW+    ++L   IL  +   T V   R    N++D  IQ+  
Sbjct: 298 EPRLQFGKYDVRRYKQKLWLVPQWQSLRETILEWDICNTLVLPDRLGELNIADRGIQVRV 357

Query: 356 PQSYRKADVP---SGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395
           P    +  +     G+  I+ ++           +  +AP+ R
Sbjct: 358 PADNERVTIRFGVQGMISIVGRQHSRHSKKLW-QELGVAPWLR 399


>gi|212710380|ref|ZP_03318508.1| hypothetical protein PROVALCAL_01440 [Providencia alcalifaciens DSM
           30120]
 gi|212686962|gb|EEB46490.1| hypothetical protein PROVALCAL_01440 [Providencia alcalifaciens DSM
           30120]
          Length = 458

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/320 (24%), Positives = 131/320 (40%), Gaps = 25/320 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ILV  SGG DS  LL AL+ +        ++  AI V H L   A     + + +C +
Sbjct: 20  RKILVGFSGGIDSTVLLHALYQIKIS-ELPSLEIRAIHVHHGLNIQADKWEAHCASLCQK 78

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I              G+ AAAR  RY    E  + +   +I+TA   DDQ ETV +  
Sbjct: 79  WDIPFICRHVTVEGSNKGIEAAARAERYQAYRE--ELLEDEIIVTAQHLDDQAETVMLAL 136

Query: 140 QRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +R       GLS M +++ +     N  + RP L   R  +  +  ++ + W ED SN D
Sbjct: 137 KRGSGP--TGLSAMPESLAFQAKCGNTVLLRPLLTISRHALEHYRAEQQLPWVEDDSNQD 194

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSIIAIS 253
           DR++R  +R  +    +  L  +   F +   +  +  A    L+ + L   +  II   
Sbjct: 195 DRYDRNFLRLHI----MPRLSERWSHFANAVSRSASLCAEQEALLDELLQDSLDEIIDYR 250

Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305
                  +++        L+R    +   Q+++P +  +ER+       +        +G
Sbjct: 251 GGLYIDGLVHCSVAKRNALIRRWIGL--HQLAMPPFNQLERIWQEVALARQDAEPICRLG 308

Query: 306 RVVIDRRANFLWITRAVRNL 325
            V I R    LW+ + + +L
Sbjct: 309 NVEIRRYQGALWVVKRINSL 328


>gi|84687702|ref|ZP_01015575.1| PP-loop family protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84664285|gb|EAQ10776.1| PP-loop family protein [Rhodobacterales bacterium HTCC2654]
          Length = 417

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 97/391 (24%), Positives = 167/391 (42%), Gaps = 22/391 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++VAVSGG DSM LL    +    +       SA++VDH LR+ A  E   V+++C+ 
Sbjct: 21  DNLVVAVSGGGDSMALLHVAQAWGRTQGKA---VSALTVDHGLRDEAATEAARVAEICAD 77

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +AH  + W +   Q  L A AR ARY LI++ A       I+  HT DD  ET  MR 
Sbjct: 78  LGVAHRTLDWPDWDGQGNLQAMARAARYDLIADAAPAG--AAILIGHTMDDAAETFLMRL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G  LS M  T     +LW+ RPFL  RR  +R +L  R I W +DP+N D ++
Sbjct: 136 ARGSGVDG--LSRMRSTWTDRGHLWL-RPFLTVRRAALRDWLHDREIGWIDDPTNDDTQY 192

Query: 200 ERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           +RVR+R+ +       ID   L +  +   + R  + +                ++    
Sbjct: 193 DRVRMRQALDLLAPLGIDAERLTMTAQAMTEARQALEHWAEQAARGTAWTEAGDVVFDQA 252

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
            +  +       L+  +          P   ++ + +  +   + G  ++G  ++  +  
Sbjct: 253 KVQALPRETHDRLIAHAIGWVASAAYRPRRAALIQAVRDVT--ETGRATLGGCLLTAKGG 310

Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI----GPQSYRKADVPSGIPP 370
            L + R  + +  L + P   ++WD R++         Q+       +   +D P     
Sbjct: 311 TLRVGREPKAVTDLRVSP--PSIWDNRWRLSGPDAPSGQVLAVRALGAGGLSDCPDWRET 368

Query: 371 IIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400
            + +  L + P+   G  L+ AP +     +
Sbjct: 369 GLPRDTLLASPAVFAGDRLVAAPLAGHPAGW 399


>gi|110679379|ref|YP_682386.1| hypothetical protein RD1_2100 [Roseobacter denitrificans OCh 114]
 gi|109455495|gb|ABG31700.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 414

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 99/411 (24%), Positives = 163/411 (39%), Gaps = 28/411 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGGSDSM LL+ L           +  S  +VDH LR  A DE R V+  C+
Sbjct: 17  PKALGVAVSGGSDSMALLVLLCGFAER---NGVALSCATVDHGLRPEAADEARSVAGYCA 73

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              + H  + W+          AAR ARY L+++ A+      I   HT DDQ ETV M 
Sbjct: 74  AHDVPHVTLKWEGWDGTGNTQNAARVARYRLLADWARGQGIADIALGHTQDDQAETVLMG 133

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G+           D  L   RP L   R  +R FL    ++WCEDPSN D +
Sbjct: 134 LARASGVDGLSAMPARRD---DRGLCWHRPLLATSRAGLRGFLSANGVAWCEDPSNDDAQ 190

Query: 199 FERVRVRRFVRDI-----DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           FER++ RR +  +     D  +L    +     R  +       I   +++     +   
Sbjct: 191 FERIKARRALTTLAELGVDRASLAQVAQNMAQARAALEQQTRRAIGDLVSLLGGGAMMPW 250

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
                + S +   +L  +          P  +++   +  L++   G  ++    +  + 
Sbjct: 251 SGFQTLPSEIARRVLMAAIDWIAAPPHAPRQKALTAALSALRA--SGSATVAGCRLILKD 308

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD-------SLIQIGPQSYRKADVPS 366
           +  W+ R  + +       + + +WD R++             +L +IG Q +     P 
Sbjct: 309 DRFWMFREFQAVAHA--RADASQLWDNRWKVTGGQGKQAREIRALGEIGLQQH-----PE 361

Query: 367 GIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFSISFGKVF 416
                + +  L + P+   G  L+ AP  +   ++   V       F +VF
Sbjct: 362 WRTMGLPRALLLATPAVYQGDVLIAAPVVQNTARWRADVIKRPGCLFDEVF 412


>gi|309787133|ref|ZP_07681745.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae 1617]
 gi|308924711|gb|EFP70206.1| tRNA(Ile)-lysidine synthetase [Shigella dysenteriae 1617]
          Length = 415

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 142/396 (35%), Gaps = 37/396 (9%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A SGG DS  LL  L    ++     +   AI V H L   A   V +  +VC + ++  
Sbjct: 2   AFSGGLDSTVLLHQLVQWRTEN--PGVVLRAIHVHHGLSANADAWVTHCENVCQQWQVPL 59

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET  +  +R   
Sbjct: 60  VVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCETFLLALKRGSG 117

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
               GLS M +   +     + RP L   R ++  + L   + W ED SN DD ++R  +
Sbjct: 118 P--AGLSAMAEVSEFA-GTRLIRPLLARTRGELAQWALAHGLRWIEDESNQDDSYDRNFL 174

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDILNIDST 262
           R  V  +    L  +   F +   +     A        +    +      Q  L I   
Sbjct: 175 RLRVVPL----LQQRWPHFAETTARSAALCAEQESLLDELLADDLAHCQSPQGTLQIAPM 230

Query: 263 LLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANF 315
           L     R +A     + G    +P   ++ R+       +     C+  G   I R  + 
Sbjct: 231 LAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRFGAFEIRRYQSQ 290

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ- 374
           LW  ++V      I+       W    Q   L   L  +   +      P     +  + 
Sbjct: 291 LWWIKSVTGQSETIVP------WQTWLQPLELPAGLGSVQLNAGGDIRPPRADEAVSVRF 344

Query: 375 --RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
               L  +  + GG+ L        + P+ R  T  
Sbjct: 345 KALGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 380


>gi|293390367|ref|ZP_06634701.1| DNA mismatch repair protein [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290950901|gb|EFE01020.1| DNA mismatch repair protein [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 448

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 136/341 (39%), Gaps = 30/341 (8%)

Query: 9   VRFFVRSLVYPA----HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +  F + L   A      L+  SGG DS  LL        +R     +  AI + H L  
Sbjct: 7   LEQFSQQLQRHAPNQTQFLIGFSGGLDSTALLTLFAKHRENR--PHFQLRAIHIHHGLSP 64

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            A     +   +C +L I   +   K  + Q G+ A AREARY  I++H        + T
Sbjct: 65  NADAWTAHCQQICRQLNIPLLIQPVKV-RLQNGIEAGAREARYEAIAQHILPE--EWLAT 121

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH   DQ ET ++  +R    +G+G       +     + I RP L   R+ + +F+ Q+
Sbjct: 122 AHHQQDQTETFFLALKRGSGLQGLGAMQANSIV---YGVPIFRPLLNFSRQQLMAFVQQQ 178

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKY 241
            ++W ED SN D++++R  +R  V    L     +   F     +          L+ + 
Sbjct: 179 QLTWVEDESNEDNQYDRNFLRNVV----LPEFRQRWAHFDSAVQRSAQHCYEQQQLLNEL 234

Query: 242 LTVHMRSIIAISQ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---L 292
           L    +  +  +       D           LLR+     G  + +P    +E+++   +
Sbjct: 235 LAEEYQKNVVENDRTFKVHDFATYSPAKQRALLRLWLQEQG--VMMPSLAQLEQLISDVI 292

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
           F KS  +    +   ++ R  N L++T    ++  + L  +
Sbjct: 293 FAKSDAQPQFRLEDKILRRHQNRLFLTPVFTDISPVCLEAK 333


>gi|311280843|ref|YP_003943074.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae SCF1]
 gi|308750038|gb|ADO49790.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae SCF1]
          Length = 436

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 153/422 (36%), Gaps = 45/422 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
            VR L     ILVA SGG DS  LL  L  V   +S   I+  AI V H L   A   VR
Sbjct: 8   AVRRLQPYRQILVAFSGGLDSTVLLHQL--VCWRQSAPDIQLRAIHVHHGLSPNADAWVR 65

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +   +C++ ++  +V     +    G+ A AR+ARY    +  +     ++ TA   DDQ
Sbjct: 66  HCQQLCAQWQVPLAVARVTLADDGLGIEAHARQARYEAFRDALQP--GEVLATAQHLDDQ 123

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ +  +R       GLS M     +     + RP L   RE +  + +Q  + W ED
Sbjct: 124 SETLLLALKRGSGP--AGLSAMPGVAPFA-GTRLVRPLLEMSRESLMQWAIQHQLRWIED 180

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            SN DD +ER  +R  V    L  L  +   F +   +     A        +    +  
Sbjct: 181 ESNQDDAYERNFLRLRV----LPLLKARWPHFAEASARSAALCAEQEQLLDELLADDLAR 236

Query: 252 ISQDILNI--------DSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRG 300
           ++     +               LLR   A  G    +P      R+       +     
Sbjct: 237 LTGAEGQLAIMPMAQMSEPRRAALLRRWLAQRG--ALMPSRDMTARIWQEVALAREDASP 294

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR---YQFQNLSDSLIQIGPQ 357
            + +G   + R    LW       + TL   P+    WD      Q      +L  +  Q
Sbjct: 295 VLRLGAFEVRRYQQQLWW------IKTLPAPPQTPLRWDDISLPLQLAEGHGALQLVPGQ 348

Query: 358 SYRKADVPSGIPPIIAQRALSSMPSKEGGKPL--------LAPFSRFMTKF----DLPVA 405
           + R       I        L  +  + GG+ L        +AP+ R  T      + P+A
Sbjct: 349 TLRHPRPDEAITIRYTAPGLLHIVGRHGGRKLKKIWQEMGVAPWLRDTTPLLFFGETPIA 408

Query: 406 YA 407
            A
Sbjct: 409 AA 410


>gi|300724776|ref|YP_003714101.1| TilS, tRNA (Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631318|emb|CBJ92013.1| TilS, tRNA(Ile)-lysidine synthetase [Xenorhabdus nematophila ATCC
           19061]
          Length = 443

 Score =  252 bits (645), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 83/397 (20%), Positives = 146/397 (36%), Gaps = 33/397 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETAKDEVRYVSDV 76
             IL+  SGG DS  LL  L  +  +        I   AI + H L   A   V +   +
Sbjct: 20  KKILLGFSGGLDSTVLLHLLTRLRDEHLHTDRAPIALRAIHIHHGLNAKADLWVEHCRQM 79

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C+  ++       +    Q G+ AAAREARY    +  +     +++TA   DDQ ET  
Sbjct: 80  CADWKVDFRTEKVRLDIRQNGIEAAAREARYQSFQQMLQP--DEILITAQHLDDQAETFL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R       GLS M   + +     + RP L   R ++  +   + + W ED SN D
Sbjct: 138 LALKRGSGP--AGLSSMPSRMPF-SGTTLIRPLLNVSRAELEVYARGKELEWIEDDSNQD 194

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--- 253
           DR++R  +R  +  +    L  +   F     +  +           +   S+ ++S   
Sbjct: 195 DRYDRNFLRLRIMPL----LNQRWPHFPQAVSRSASLCGEQEQLLDELLSESLDSVSTLE 250

Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305
                  + +        LLR   +  G  + +P    ++R+       +        +G
Sbjct: 251 GSILIPPLESDSEAKRNALLRRWLSQRG--VKMPAREQLQRIWSEVALARQDAEPRFRLG 308

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPE---ETTVWDGRYQFQNLSDSLIQI-GPQSYRK 361
           +  I R    LW+    + L   +L  +   E  + DG           I++  P S  +
Sbjct: 309 QNEIRRYQQQLWLVPRYQPLAGSVLEWDTQQELILPDGLGTLILSEKEGIKVRSPNSREQ 368

Query: 362 ADVPSGIP---PIIAQRALSSMPSKEGGKPLLAPFSR 395
             +  GI     I+ +            +  +AP+ R
Sbjct: 369 VTIRFGIQGNISIVGRHHSRHSKKLW-QELGVAPWLR 404


>gi|221640121|ref|YP_002526383.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131]
 gi|221160902|gb|ACM01882.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides KD131]
          Length = 412

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 101/393 (25%), Positives = 164/393 (41%), Gaps = 31/393 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG DSM LL              I   A++VDH LR  A DE R V+ VC+ L 
Sbjct: 19  LGLAVSGGGDSMALLHLAAE-------TGIATRAVTVDHGLRPEAADEARAVARVCAGLG 71

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H ++ W+    +  LM  AR AR  LI++ A+      +   HT DD  ET  MR  R
Sbjct: 72  VPHDILRWEGWDGRGNLMDQARRARLRLIADWARAAGLEAVALGHTRDDVAETFLMRLAR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+        +     +   RP L   RE++R+ L +R  SW EDPSN +  FER
Sbjct: 132 GAGVDGLAAM---QAVRRAEGMVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFER 188

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           VRVR+ +  +         L        ++R  ++  +     +   V  R  + ++   
Sbjct: 189 VRVRQAMESLADLGLRPERLADVASHLAEVRDALDLQLREAAGRLAQVD-RGDVVLASAA 247

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L +   +L  LLR +          P   ++ + +  L  G    V++    +  R   L
Sbjct: 248 LELPPEILRRLLRAALQWVASAEYGPRGPALGQAIRRLSEGT--TVTLHGCRLAPRREGL 305

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS--------LIQIGPQSYRKADVPSGI 368
            I R  + + +++    E   WDGR+  Q    +        +  +GP+   +   P   
Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQAPGGADFSADGLEIRALGPEGLTRC--PDWR 361

Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400
              + + +L + PS   G  L+ AP +     +
Sbjct: 362 ASGLPRPSLLAAPSVWHGDALVAAPLAGLSNGW 394


>gi|86139143|ref|ZP_01057713.1| PP-loop family protein [Roseobacter sp. MED193]
 gi|85823987|gb|EAQ44192.1| PP-loop family protein [Roseobacter sp. MED193]
          Length = 399

 Score =  252 bits (644), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 153/403 (37%), Gaps = 18/403 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA I +AVSGG DS+ L+  L     D     ++    +VDH LR  ++ E    + +  
Sbjct: 2   PARIGIAVSGGGDSVALMHLLKECFCD---DPVELMVATVDHGLRAESRQEAEDTARMAR 58

Query: 79  RLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            L + H +++W+    +TG L   AR ARY L++  A+     ++   HT DDQ ETV M
Sbjct: 59  ELGLRHEILTWEQGPEKTGNLQDQARRARYGLLTAWARQNGIPVLALGHTADDQAETVIM 118

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+    +  T      L       R    ++R +L     SW EDPSN D+
Sbjct: 119 RLMRASGVNGLAGIPVRRTQDGVSLLRPLLGLRRV---ELRQYLDAAGQSWIEDPSNEDE 175

Query: 198 RFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            ++R+++R+ +       + + AL    +     +  +     +     + +   +++  
Sbjct: 176 SYDRIKIRKALAVLEDLGLTVPALATVAQNMGKAQKALGWYAFLSARDMVRIEAGAVVLE 235

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
            +    +   +   L+  +     G    P  + M  +     + + G  ++    I   
Sbjct: 236 LRKYRTLPDEISHRLMLQAILWVSGGQYAPRRQPM--IEAVAIAQRGGSATLAGCRILSH 293

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-PSGIPPI 371
              +W+ R    +P     P +  +WD R++         ++ P       + P      
Sbjct: 294 QGKIWVCREAAMVPQEACDPGD--LWDQRWRIFAGKLEACEVRPLGSEGLKLCPDWRAQG 351

Query: 372 IAQRALSSMPSKE-GGKPLLAPFSRFMTKFDLPVAYAFSISFG 413
                L   P+    G  + AP + F          +    F 
Sbjct: 352 CPAPILEVTPALWRDGNLMAAPLAGFANGCSAEPINSAEEFFA 394


>gi|168464199|ref|ZP_02698102.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195632620|gb|EDX51074.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 430

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  GRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPAWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|153947345|ref|YP_001400015.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis IP
           31758]
 gi|254764826|sp|A7FFI7|TILS_YERP3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|152958840|gb|ABS46301.1| tRNA(Ile)-lysidine synthase [Yersinia pseudotuberculosis IP 31758]
          Length = 451

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/338 (24%), Positives = 134/338 (39%), Gaps = 29/338 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L+P+         L    H+LV  SGG DS  LL  L  +       ++   AI + H
Sbjct: 1   MLLNPL------FAQLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHH 53

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A   V++    C + +I   VV       Q G+ AAAR ARY   S  A      
Sbjct: 54  GLNPQADSWVKHCMQQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKE 111

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TA   DDQ ET  +  +R       GLS M   + +  +  + RP L   RE + ++
Sbjct: 112 VLLTAQHLDDQCETFLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENY 168

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAML 237
              + + W ED SN DDRF+R  +R  V    L  L  +   F     +   +      L
Sbjct: 169 AQAQQLQWIEDDSNQDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQL 224

Query: 238 IPKYLTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
           + + L  +++ +    +      +L         +LR   A  G    +P    ++R+ L
Sbjct: 225 LDELLAENLQQLQGPDRSLSIDGLLQASMAKRAAILRRWLASLG--APMPSQSQLQRLWL 282

Query: 293 ---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT 327
                +      + IG   + R    L++   +  + T
Sbjct: 283 EVAMARQDAEPQLMIGTRQVRRFRQHLYLLMPLAEITT 320


>gi|271499513|ref|YP_003332538.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech586]
 gi|270343068|gb|ACZ75833.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech586]
          Length = 448

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 151/407 (37%), Gaps = 39/407 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L      LVA SGG DS  LL  +  +   R+   +   A+ V H L   A     +  
Sbjct: 18  QLATGGRYLVAYSGGLDSTVLLHVMTRLRLPRA---LSLRAVYVHHGLSVNADAWAEHCR 74

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C   ++  +V++ K      G+ AAAR ARY ++ +H        ++TA   DDQ ET
Sbjct: 75  TQCINWQVPFNVLAVKVDARDGGIEAAARTARYQVLHQHLCE--GETLLTAQHQDDQSET 132

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R     G+       T+     + + RP L   RE +  +     + W ED SN
Sbjct: 133 FLLALKRGSGPAGLASMAASATL---NGVTLLRPLLGISREQLEGYARAHQLVWVEDDSN 189

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252
            D+R++R  +RR V    L AL  +   F     +     A        +   S+  +  
Sbjct: 190 ADERYDRNFLRRQV----LPALRQRWPHFPSAVARSAALCAEQEQLLDELLAESLATLRN 245

Query: 253 SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305
           +   L++D+ +     R  A     +      +P    + R+       +      + +G
Sbjct: 246 ADGGLSVDALIPMSATRRFALLRRWLSEQGARMPSREQLMRLWHEVALSREDANPQLQLG 305

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS-YRKADV 364
              + R  ++L+    ++ +   +L    T          +L D L Q+   +   +   
Sbjct: 306 SWQVRRFRHYLYWLPTMQPVTGYVLPWRPTVA------PLSLPDGLGQLTLSAQGIRVRQ 359

Query: 365 PSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
           P     +  +   +    +  +E G+P+        + P+ R  T  
Sbjct: 360 PRSDESVTVRFGFQGYVQIVGREHGRPIKKLWQELGVPPWLRDRTPL 406


>gi|99082202|ref|YP_614356.1| tRNA(Ile)-lysidine synthetase-like [Ruegeria sp. TM1040]
 gi|99038482|gb|ABF65094.1| tRNA(Ile)-lysidine synthetase-like protein [Ruegeria sp. TM1040]
          Length = 430

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 101/413 (24%), Positives = 181/413 (43%), Gaps = 28/413 (6%)

Query: 1   MFLSPIE-SVRFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M L+P E ++   +R+ + P    + VAVSGGSDS+ L+  L ++           +  +
Sbjct: 1   MLLTPTEEALTSAIRARIGPLPEKLGVAVSGGSDSVALMHVLATMARAEDTA---LAVAT 57

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           VDH LR  ++ E  +V+     L ++H  ++W++      L A AR ARY L+ + A+T 
Sbjct: 58  VDHGLRPESRREAEFVAQQAHDLGLSHQTLTWQHPADSGNLQAEARAARYRLLGDWARTQ 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   HT DDQ ETV MR +R       GL GM  T  +   + + RP L  RR D+
Sbjct: 118 GLGAVAVGHTADDQAETVLMRLRRASGV--AGLCGMP-TCHHRDGIDVLRPMLDLRRSDL 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID-----LHALYLKMKKFQDLRVKVNN 232
           R++L  R+++W EDPSN D +FERVR+R  +  ++     + AL       +     +++
Sbjct: 175 RAYLTARDVAWIEDPSNLDMKFERVRIRDALNALEPLGLTVDALTAVADNMRMANRALDS 234

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
           A          + +  ++        +++ +   LL  +     G    P    +   + 
Sbjct: 235 ATRTAAASIGQIRLGMVVLDCAGFNRLETEIARRLLVSALLHTNGAAYPPRRAPVLDALK 294

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETTV------WDGRYQF 344
            LK G+   +    +++      +W+ R   ++      L P E  V      WD  +  
Sbjct: 295 ALKEGRGATLQGCHILVR--GGAIWVGREYASVQHSACALLPGEGGVATMDATWDAAWHI 352

Query: 345 QNLSDSLIQIGPQSYRK---ADVPSGIPPIIAQRALSSMPSKE-GGKPLLAPF 393
           +  +    ++  ++      A++P        +  L S+P     G+ + AP 
Sbjct: 353 KAPAGWSRRVEIRALGAEGLAEIPDWRSHDAPRALLKSLPGVWCDGQLIAAPL 405


>gi|33151295|ref|NP_872648.1| cell-cycle protein MesJ [Haemophilus ducreyi 35000HP]
 gi|61216603|sp|Q7VPN7|TILS_HAEDU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33147515|gb|AAP95037.1| probable cell-cycle protein MesJ [Haemophilus ducreyi 35000HP]
          Length = 428

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 155/418 (37%), Gaps = 27/418 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LS  +      +      ++L+++SGG DS+ LL                  AI + H
Sbjct: 1   MLLSRFQQ--QLTQHFPQQPNVLLSLSGGIDSVVLLDLFSR-------TTTPLRAIYIHH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A +   +   +C +  I   ++        TG+ A AR ARY  I+EH +     
Sbjct: 52  GLSANADNWADFCEALCKQYNIPF-ILQKVTVDKSTGIEAGARTARYKAIAEHIQAN--E 108

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           ++ TAH  +DQ ET  +  +R    KG+        + +  N+ I RP L   +++I+ +
Sbjct: 109 ILATAHHLNDQAETFLLALKRGSGVKGLSAM---QIVSHRQNMTIFRPLLSTTKKEIQQY 165

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
             Q+ + W ED SN ++ ++R  +R  +  + L   + +  +      K   A   L+ +
Sbjct: 166 AKQQQLCWIEDESNQNNHYDRNFLRNQILPLLLQR-WPQFNQMIARSAKHCTAQQQLLAE 224

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVS----AAICGGQISLPGYRSMERVM---LF 293
            L   +     I +  L I     F  L+        +    I +P     E+++   L 
Sbjct: 225 LLDEELHRYANIDEKSLQISQFKHFSPLKQQQLIRLWLAKCDIPMPTSAQFEQIISGFLN 284

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL--ILYPEETT-VWDGRYQFQNLSDS 350
             + K   + +    + R    L++T  + N      IL   +T  + D   Q       
Sbjct: 285 SATDKHPQLRLKNWTLRRFQKTLYLTPQLANTQHFCQILSVNQTIDLPDNLGQLTRQPQQ 344

Query: 351 LIQIGPQSYRKADVPSGIPPIIAQRALSSMPS-KEGGKPLLAPFSRFMTKFDLPVAYA 407
           +I        +  +P  +  +     L      K    P      +   +  +PV   
Sbjct: 345 IIYQQTHKTNRLLLPESLRTVPLTIKLHQTGKVKRYQHPHSEEMKKLYQQAKIPVWQR 402


>gi|17986625|ref|NP_539259.1| cell cycle protein MESJ [Brucella melitensis bv. 1 str. 16M]
 gi|17982239|gb|AAL51523.1| cell cycle protein mesj [Brucella melitensis bv. 1 str. 16M]
          Length = 429

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 129/424 (30%), Positives = 191/424 (45%), Gaps = 32/424 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           + AVSGGSDS+GLL  L   LS      +   A++VDH LR  +  E   V  +C +  I
Sbjct: 2   IAAVSGGSDSLGLLFLLKDYLSTLESPPV-LIAVTVDHKLRAESALEAENVGLLCQKHGI 60

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H V+SW + KP  GL AAAR ARY L+ + A+   A  I+T HT +DQ+ET  MR  R 
Sbjct: 61  MHCVLSWDDPKPAHGLAAAARTARYRLLVQAARDAGAGFIVTGHTENDQIETFLMRKARS 120

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +  GL+ M    L + ++ ++RP L   R+ +R  L +R I+W +DPSN +  +ER 
Sbjct: 121 GHCEARGLAAMSPRSLLEGSVELARPLLTVSRQALRDELTRRGIAWVDDPSNANIDYERP 180

Query: 203 RVRRFV-RDIDLHALYLKMKKFQDLRVKVNNAV--AMLIPKYLTVHMRSIIAISQDILNI 259
           RVR  V  + D   +  ++ +    R + N A+  A+  P  L V    ++ ++ D    
Sbjct: 181 RVRLGVAAEADGQEVLEQIAQAGAARERNNAALVEALADPATLGVDAAGMMFLNADCYAA 240

Query: 260 DSTLLFYL-LRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
            S     L   + A+I GG+  LPG    R +ER++    + +R  V    +    +   
Sbjct: 241 LSPGARQLFSGLLASIAGGRRFLPGDGERRRIERMLSGQDAPRRLTVFGALIERGEKGAP 300

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA-----DVPSGIPP 370
               R  RNLP L L P +  VWDGR+ F N      +I P   ++      +    I  
Sbjct: 301 HRFRRERRNLPKLDLVPGQHIVWDGRFCFFNSGGRSFEIAPPGRQELIDFLKNSGRDIES 360

Query: 371 IIAQRALSSMPSKEGGKPLLAP-------------------FSRFMTKFDLPVAYAFSIS 411
              +  L S    EGGK    P                   F   +   D  +A A    
Sbjct: 361 RRCEALLISPALYEGGKLAFVPFLPGAEWPQGVHIERHFAIFDHVLPGHDFALAQAVEAR 420

Query: 412 FGKV 415
            G+ 
Sbjct: 421 LGRA 424


>gi|167553350|ref|ZP_02347099.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|197262939|ref|ZP_03163013.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197241194|gb|EDY23814.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205322182|gb|EDZ10021.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 430

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G C          + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGECSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|261867859|ref|YP_003255781.1| tRNA(Ile)-lysidine synthase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413191|gb|ACX82562.1| tRNA(Ile)-lysidine synthase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 448

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 131/332 (39%), Gaps = 26/332 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R        L+  SGG DS  LL        +R   + +  AI + H L   A     + 
Sbjct: 16  RHAPNQKQFLIGFSGGLDSTALLALFAKHRENR--PRFQLRAIHIHHGLSPNADAWAAHC 73

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +C  L I   +   K  + Q G+ A ARE RY  I++H        + TAH   DQ E
Sbjct: 74  QKICRHLNIPLLIQPVKV-RLQNGIEAGARETRYEAIAQHILPE--EWLATAHHQQDQTE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T ++  +R    +G+G       +     + I RP L   R+ + +F+ Q+ ++W ED S
Sbjct: 131 TFFLALKRGSGLQGLGAMQANSIV---YGVPIFRPLLNFSRQQLMAFVQQQQLTWVEDES 187

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSII 250
           N D++++R  +R  V    L     +   F     +          L+ + L    +  +
Sbjct: 188 NEDNQYDRNFLRNVV----LPEFRQRWAHFDSAVQRSAQHCYEQQQLLNELLAEEYQKNV 243

Query: 251 AISQ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
             +       D           LLR+     G  + +P    +E+++   +F KS  +  
Sbjct: 244 VENDRTFKVHDFATYSPAKQRALLRLWLQEQG--VMMPSLAQLEQLISDVIFAKSDAQPQ 301

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
             +   ++ R  N L++T    ++  + L  +
Sbjct: 302 FRLEDKILRRHQNRLFLTPVFTDISPVCLEAK 333


>gi|238751432|ref|ZP_04612924.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380]
 gi|238710299|gb|EEQ02525.1| tRNA(Ile)-lysidine synthase [Yersinia rohdei ATCC 43380]
          Length = 456

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 17/312 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG DS  LL  L  +  D+   ++   AI + H L   A   V++  
Sbjct: 18  QLGGHRHVLVGFSGGLDSSVLLHLLVCL-RDQFIPELMIRAIHIHHGLNPRADSWVKHCQ 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C +  +A  VV        +G+ AAAR ARY   + H  T    +++TA   DDQ ET
Sbjct: 77  QQCEQWGVALEVVRVTIDTRDSGIEAAARNARYQAFASHLATN--EVLLTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M     +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAAKRPFAHS-QLLRPLLAFSRETLENYARAQQLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253
            DDRF+R  +R  +  + L+  +    +       +      L+ + L  +++ +     
Sbjct: 192 QDDRFDRNFLRLRILPL-LNRRWPHFAQATARSAGLCAEQEQLLDELLADNLQQLQNTDG 250

Query: 254 ----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGR 306
                 +L         +LR   A  G   S+P    ++R+ L     +      +++G 
Sbjct: 251 ALSIDGLLLASDAKRAAILRRWLARSG--ASMPSQSQLQRLWLEVAMARQDAEPQLTLGA 308

Query: 307 VVIDRRANFLWI 318
            ++ R   +L++
Sbjct: 309 HLVRRYRQYLYL 320


>gi|238911302|ref|ZP_04655139.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 430

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/402 (21%), Positives = 144/402 (35%), Gaps = 39/402 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +L   +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
            R  + LW       + T+    E T VW        L   L  +      +   P    
Sbjct: 302 RRYQSQLWW------IKTVAGQHETTVVWPVWQTPLALPAGLGTVQLVPGGELRRPREEE 355

Query: 370 PIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
            +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 356 SVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|163742231|ref|ZP_02149619.1| PP-loop family protein [Phaeobacter gallaeciensis 2.10]
 gi|161384561|gb|EDQ08942.1| PP-loop family protein [Phaeobacter gallaeciensis 2.10]
          Length = 386

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 95/389 (24%), Positives = 162/389 (41%), Gaps = 31/389 (7%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW--- 89
           M L+  LH   +D     ++    +VDH LR T+ DE + V+   ++L +AH ++ W   
Sbjct: 1   MALMHLLHECFADVG---VEICVATVDHGLRPTSGDEAQMVAGAAAKLGMAHDILQWCDR 57

Query: 90  KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149
             +     L   AR ARYAL++  A+  + + +   HT DDQ ET+ MR  R     G+ 
Sbjct: 58  PTAGQAGNLQEQARNARYALLTSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSGLS 117

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
                  +     + + RP L   RE++R++L  R   W EDPSN D RFERVRVR+ + 
Sbjct: 118 AMSRSRAME---GVTLLRPLLEVTREELRAYLRARECCWVEDPSNEDARFERVRVRQAME 174

Query: 210 DID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            ++     +  L    +     R  ++    +       V   +I+   +    +   + 
Sbjct: 175 ALEPLGLTVERLAAVARNMGAAREALDWYTFLAARDMAEVRDGAIVIDQRQFRTLPDEIA 234

Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
             LL  S     G +  P    M +    ++ G  G  ++G   +  R    WI R  + 
Sbjct: 235 HRLLVRSVQWVSGAVHPPRRDPMVKARDAVRHG--GSFTLGGCRMITRRQRTWICREYKP 292

Query: 325 LPTLILYPEETTVWDGRYQFQNL---SDSLIQIGPQS------YRKADVPSGI----PPI 371
           +   +  P +  +WD R++          +  +GP        +R+A+VP  +    P +
Sbjct: 293 VAEEVALPGK--IWDQRWRVFGGEVQDHEVRALGPAGLLHCPDWRQAEVPGAVLQATPAV 350

Query: 372 IAQRALSSMPSKEGGKPLLAPFSRFMTKF 400
             Q  L + P    G    A   +   +F
Sbjct: 351 WKQDELIAAPLAGNGNGWTAELVQNSEEF 379


>gi|108755189|emb|CAK32581.1| putative PP-loop superfamily ATPase [uncultured organism]
          Length = 460

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 144/334 (43%), Gaps = 14/334 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + + VAVSGG DSM L +        R       +A++VDH LR  A DE R V      
Sbjct: 37  SRLAVAVSGGGDSMALCLLAQRWAGRRRGST---TALTVDHGLRPEAADEARQVGRWLKA 93

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +AH V+ W+  KP +G+ AAAR ARY L++  A+      ++ AH  +DQ ET  +R 
Sbjct: 94  RGVAHHVLEWRGPKPVSGIQAAARAARYGLMTAWAREAGVLHLLVAHHQEDQAETFLLRL 153

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+              + + RP L   R  +R+        W EDPSN D  F
Sbjct: 154 ERGSGIDGLSAMAAIVETPA---VRLVRPLLGVPRARLRATARAFGQEWLEDPSNRDAAF 210

Query: 200 ERVRVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            R R+R  +  +         L  K  +   +R+ + NA + L+    TVH      + Q
Sbjct: 211 ARTRIRAALPALARSGMSPAVLAEKANRVGHVRIALENAASALLAVCCTVHPAGYARLDQ 270

Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV-SIGRVVIDRR 312
            I+      + F  L       GG+   P    +ER+   +  GK G   ++G   I   
Sbjct: 271 SIVAAAPEDVSFRALARILMCVGGREYAPRREKLERLYAVVVGGKLGKARTLGGCRILAE 330

Query: 313 ANFLWITRAVRNLPTLILY-PEETTVWDGRYQFQ 345
              + + R +R +P  I   P    VWDGR+  +
Sbjct: 331 GYRILVCREMRGMPEPIAAVPGTRVVWDGRFVIR 364


>gi|51597300|ref|YP_071491.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis IP
           32953]
 gi|186896405|ref|YP_001873517.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis PB1/+]
 gi|61217229|sp|Q667K7|TILS_YERPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51590582|emb|CAH22223.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186699431|gb|ACC90060.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis PB1/+]
          Length = 460

 Score =  250 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 23/324 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG DS  LL  L  +       ++   AI + H L   A   V++  
Sbjct: 18  QLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHHGLNPQADSWVKHCM 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C + +I   VV       Q G+ AAAR ARY   S  A      +++TA   DDQ ET
Sbjct: 77  QQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYAQAQQLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIA 251
            DDRF+R  +R  V    L  L  +   F     +   +      L+ + L  +++ +  
Sbjct: 192 QDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQLLDELLAENLQQLQG 247

Query: 252 ISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
             +      +L         +LR   A  G    +P    ++R+ L     +      + 
Sbjct: 248 PDRSLSIDGLLQASMAKRAAILRRWLASLG--APMPSQSQLQRLWLEVAMARQDAEPQLM 305

Query: 304 IGRVVIDRRANFLWITRAVRNLPT 327
           IG   + R    L++   +  + T
Sbjct: 306 IGTRQVRRFRQHLYLLMPLAEITT 329


>gi|253988142|ref|YP_003039498.1| tRNA (Ile)-lysidine synthetase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779592|emb|CAQ82753.1| tRNA (ile)-lysidine synthase [Photorhabdus asymbiotica]
          Length = 442

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 26/341 (7%)

Query: 10  RFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           R FV   + L     ILV  SGG DS  LL  L +  +  +   ++  AI + H L   A
Sbjct: 7   RLFVTLTKQLGEHKKILVGFSGGLDSSVLLYLLVNWRNQYN-QNVQLRAIHIHHGLNIKA 65

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              V++   +C   ++            Q G+ AAAR+ARY +     +     +++TA 
Sbjct: 66  DQWVKHCQQICDDWQVEFFFEKVTIDARQKGIEAAARDARYQVFKRELQK--DEILVTAQ 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ET  +  +R     G+        I    +  + RP L   R ++  +  +  +
Sbjct: 124 HLDDQAETFLLALKRGSGPAGLASM---PPIAVFADTLLLRPLLGYSRNELEIYANEHCL 180

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           +W ED SN DDR++R  +R  +  + L+  +    +       +      L+ + L   +
Sbjct: 181 NWIEDDSNQDDRYDRNFLRLHIMPL-LNQRWPYFPQSVARSANLCGEQEQLLDELLNESL 239

Query: 247 RSIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298
           + +IA    +               LLR      G  + +P    + R+       ++  
Sbjct: 240 KKLIAQDGALAISPLDGYSEVKRNALLRRWFGFHG--MKMPSREQLCRLWYEVALARTDA 297

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD 339
              +  G+  + R    LW+   ++ L  +++       WD
Sbjct: 298 EPRLQFGQHDVRRYKQKLWLVPQLQPLRGIVIE------WD 332


>gi|56412509|ref|YP_149584.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|61216419|sp|Q5PD76|TILS_SALPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56126766|gb|AAV76272.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 430

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 144/399 (36%), Gaps = 35/399 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R 
Sbjct: 15  RILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCERW 72

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +
Sbjct: 73  QVPLVVERMTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALK 130

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD ++
Sbjct: 131 RGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD 187

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R  +R     + L   +            +      L+ + L   +   I  ++  L + 
Sbjct: 188 RNFLRLRALPL-LQRRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLS 245

Query: 261 STLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRA 313
             +L   +R +A     +      +P   ++ER+       +     C+  G   I R  
Sbjct: 246 PLMLMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQ 305

Query: 314 NFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPII 372
           + LW  ++V     T +++P   T          L   L  +      +   P     + 
Sbjct: 306 SQLWWIKSVAGQHETTVVWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVS 358

Query: 373 AQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
            +     +  +  + GG+ L        + P+ R  T  
Sbjct: 359 IRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|326626600|gb|EGE32943.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 430

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G C          + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGECSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPASVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|170023333|ref|YP_001719838.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis YPIII]
 gi|169749867|gb|ACA67385.1| tRNA(Ile)-lysidine synthetase [Yersinia pseudotuberculosis YPIII]
          Length = 460

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 23/324 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG DS  LL  L  +       ++   AI + H L   A   V++  
Sbjct: 18  QLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHHGLNPQADSWVKHCM 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C + +I   VV       Q G+ AAAR ARY   S  A      +++TA   DDQ ET
Sbjct: 77  QQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYAQAQQLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIA 251
            DDRF+R  +R  V    L  L  +   F     +   +      L+ + L  +++ +  
Sbjct: 192 QDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQLLDELLAENLQQLQG 247

Query: 252 ISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
             +      +L         +LR   A  G    +P    ++R+ L     +      + 
Sbjct: 248 PDRSLSIDGLLQASMAKRAAILRRWLASLG--APMPSQSQLQRLWLEVAMARQDAEPQLM 305

Query: 304 IGRVVIDRRANFLWITRAVRNLPT 327
           IG   + R    L++   +  + T
Sbjct: 306 IGTRQVRRFRQHLYLLMPLAEITT 329


>gi|168235017|ref|ZP_02660075.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738177|ref|YP_002113259.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|254789047|sp|B4TYE9|TILS_SALSV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|194713679|gb|ACF92900.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197291746|gb|EDY31096.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 430

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 143/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVKRVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + +   + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVHHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|149915623|ref|ZP_01904149.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b]
 gi|149810515|gb|EDM70358.1| Probable cell cycle protein [Roseobacter sp. AzwK-3b]
          Length = 417

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 99/402 (24%), Positives = 172/402 (42%), Gaps = 17/402 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  + VAVSGGSDS+GLL+ L+     R  G     A++VDH LR  A  E   V+  C
Sbjct: 20  APERLAVAVSGGSDSLGLLVVLNDW---RLAGGPALHAVTVDHRLRPEAAQEAAKVAADC 76

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            RL + H +++W +   +  L   AR ARY L+++ A+      I  AHT DDQ ET  M
Sbjct: 77  KRLGVPHDILTWTDWDGRGNLSDQARRARYGLMAQWARGQGIACIAIAHTADDQAETFLM 136

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+              +   RP L   R ++R+ L  R ++W EDPSN D 
Sbjct: 137 RLARGAGVDGLSAM---SERFESHGVTFCRPALAIFRHELRAALEGRGMTWVEDPSNEDP 193

Query: 198 RFERVRVRRFVRDIDL-----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           R+ERV+ R  ++++         L     +  D+R  +         +++ +    +I  
Sbjct: 194 RYERVKARAALQELAPLGITTAGLLAMAHRMSDVRQTLYLYALEAARQHVRIQSGDLIVD 253

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                 +       +++ S     G   +P  R+++ ++  +  G+   +++   ++  R
Sbjct: 254 RPGFDGLPRETARRIMQTSLKWISGAEYVPRGRAVDDLLDAIAEGRD--MTLQGCLVTLR 311

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG-IPPI 371
            + L ITR  + + +     + T VWDGR++ +    +  ++           +G     
Sbjct: 312 KDHLRITREWKAVASERC--QVTHVWDGRWRLEGPDIAGAELRALGKNGLSHCAGRRETG 369

Query: 372 IAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFSISF 412
           +   +L + PS      LL AP +     +   +       F
Sbjct: 370 LPATSLIAGPSVWREDELLAAPLAGLENGWRAILIRDEEAYF 411


>gi|159043663|ref|YP_001532457.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
 gi|157911423|gb|ABV92856.1| tRNA(Ile)-lysidine synthetase [Dinoroseobacter shibae DFL 12]
          Length = 417

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 109/387 (28%), Positives = 167/387 (43%), Gaps = 23/387 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     I VA+SGG DSM LL  L    +       +  A SVDH LR  A DE+   
Sbjct: 17  RWVPDARRIGVAMSGGGDSMALLHLLADWAAQ---SGAELRAASVDHGLRPEAADEIALA 73

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +  C+ L I H  ++W    P   L AAAR+ARY L+S+ A+     ++   HT DDQ E
Sbjct: 74  AKTCAALGIPHDSLTWD-EAPAGNLQAAARDARYRLLSDWAQAQGCAVVCLGHTQDDQAE 132

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV +R  R     G  L+ M    L    +W+ RP L   R  +R+ L  R ++W EDPS
Sbjct: 133 TVLLRLLRGSGVDG--LAAMRPRTLRAGTVWL-RPLLAVSRAALRADLTARGVAWAEDPS 189

Query: 194 NTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           N D RF+RVRVR+ +  +DL    L    +     +  +    A              I 
Sbjct: 190 NADLRFDRVRVRQAMAALDLPVARLADTAQAMARAQEALGRRAAEAAQAGAVRFEDGDIL 249

Query: 252 ISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
           ++ D L+ +D+     LL  +     G    P   ++  V   L++G+    ++    + 
Sbjct: 250 LTADALSALDAETRLRLLAEALRWVAGAAYRPRLSALTGVWDGLEAGQGA--TLHGCRLL 307

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS------LIQIGPQSYRKADV 364
              +   + R  R +  L +      +WDGR+Q +   D       +  +G     +   
Sbjct: 308 AGVSAWRVCREYRAVAALEVPAG--ALWDGRWQLRLAKDETRPDVTVRALGQAGLGQITR 365

Query: 365 PSGIPPIIAQRALSSMPSKEGGKPLLA 391
           P   PP     +L S P+   G  +L+
Sbjct: 366 PDPGPPH---PSLMSTPALWRGDEVLS 389


>gi|200387429|ref|ZP_03214041.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604527|gb|EDZ03072.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLAPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|168230546|ref|ZP_02655604.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194471349|ref|ZP_03077333.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194457713|gb|EDX46552.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335048|gb|EDZ21812.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G C          + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGECSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|289830090|ref|ZP_06547530.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 431

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 143/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 15  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 72

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 73  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 130

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 131 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 187

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 188 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 242

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 243 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 302

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  + V     T + +P   T          L   L  +      +   P   
Sbjct: 303 RRYQSQLWWIKTVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 355

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 356 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 398


>gi|238787216|ref|ZP_04631015.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641]
 gi|238724478|gb|EEQ16119.1| tRNA(Ile)-lysidine synthase [Yersinia frederiksenii ATCC 33641]
          Length = 461

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 132/327 (40%), Gaps = 23/327 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L     +LV  SGG DS  LL  L  +  D+   ++K  AI + H L   A   V +  
Sbjct: 18  QLGEQRRVLVGFSGGLDSSVLLHLLVCL-RDQLIPELKIRAIHIHHGLNPQADSWVMHCQ 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C + RI   VV        +G+ AAAR ARY   S H       +++TA   DDQ ET
Sbjct: 77  QQCKQWRIPLEVVRVSIDARHSGIEAAARTARYQAFSSHLAA--DEVLLTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYARAQQLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHMR 247
            DDRF+R  +R  V    L  L  +   F     +  +  A        L+   L     
Sbjct: 192 QDDRFDRNFLRLKV----LPLLNQRWPHFAQATARSASLCAEQEQLLDELLADNLQQLQN 247

Query: 248 SIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
              A+S   +L         LLR   A CG   S+P    ++R+ L     ++     + 
Sbjct: 248 PEGALSIAGLLLASEAKRAALLRRWLAGCG--ASMPSQSQLQRLWLEVAMARADAEPQLI 305

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLIL 330
           IG   + R   +L++   +  +    L
Sbjct: 306 IGSHQVRRFRQYLYLLPPLAEIRAPHL 332


>gi|204927320|ref|ZP_03218522.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323985|gb|EDZ09180.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 143/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPHVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + +   + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVHHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|62178806|ref|YP_215223.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|75484785|sp|Q57T19|TILS_SALCH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|62126439|gb|AAX64142.1| cell cycle protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713260|gb|EFZ04831.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +  A   L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAAQERLLDELLASDLTDCI-TTEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPAWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|16759227|ref|NP_454844.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140776|ref|NP_804118.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213161205|ref|ZP_03346915.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213416904|ref|ZP_03350048.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213428146|ref|ZP_03360896.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213612494|ref|ZP_03370320.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213646227|ref|ZP_03376280.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|61216696|sp|Q8Z996|TILS_SALTI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|25325274|pir||AG0531 cell cycle protein MesJ [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16501518|emb|CAD08695.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136400|gb|AAO67967.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|33356621|gb|AAQ16558.1| putative cell cycle protein [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 430

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 143/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  + V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKTVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|22126993|ref|NP_670416.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM 10]
 gi|45442556|ref|NP_994095.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Microtus str.
           91001]
 gi|108806535|ref|YP_650451.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Antiqua]
 gi|108813098|ref|YP_648865.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516]
 gi|145598932|ref|YP_001163008.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides F]
 gi|149366937|ref|ZP_01888970.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CA88-4125]
 gi|162418463|ref|YP_001607754.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Angola]
 gi|165927115|ref|ZP_02222947.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165939833|ref|ZP_02228373.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011914|ref|ZP_02232812.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166211335|ref|ZP_02237370.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167399756|ref|ZP_02305274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167419749|ref|ZP_02311502.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425306|ref|ZP_02317059.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470891|ref|ZP_02335595.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis FV-1]
 gi|218928230|ref|YP_002346105.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CO92]
 gi|229837769|ref|ZP_04457929.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides A]
 gi|229840991|ref|ZP_04461150.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229843092|ref|ZP_04463242.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229903541|ref|ZP_04518654.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516]
 gi|270487322|ref|ZP_06204396.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM D27]
 gi|294503079|ref|YP_003567141.1| hypothetical protein YPZ3_0969 [Yersinia pestis Z176003]
 gi|61217402|sp|Q8ZH50|TILS_YERPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21960038|gb|AAM86667.1|AE013912_11 cell cycle protein [Yersinia pestis KIM 10]
 gi|45437421|gb|AAS62972.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Yersinia pestis biovar Microtus str.
           91001]
 gi|108776746|gb|ABG19265.1| hypothetical protein YPN_2938 [Yersinia pestis Nepal516]
 gi|108778448|gb|ABG12506.1| hypothetical protein YPA_0538 [Yersinia pestis Antiqua]
 gi|115346841|emb|CAL19727.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145210628|gb|ABP40035.1| hypothetical protein YPDSF_1650 [Yersinia pestis Pestoides F]
 gi|149290551|gb|EDM40627.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis CA88-4125]
 gi|162351278|gb|ABX85226.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Angola]
 gi|165912236|gb|EDR30873.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921011|gb|EDR38235.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989180|gb|EDR41481.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207106|gb|EDR51586.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166962490|gb|EDR58511.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167050464|gb|EDR61872.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055706|gb|EDR65490.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229679311|gb|EEO75414.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Nepal516]
 gi|229689968|gb|EEO82027.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229697357|gb|EEO87404.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229704146|gb|EEO91158.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis Pestoides A]
 gi|262361117|gb|ACY57838.1| hypothetical protein YPD4_0929 [Yersinia pestis D106004]
 gi|270335826|gb|EFA46603.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis KIM D27]
 gi|294353538|gb|ADE63879.1| hypothetical protein YPZ3_0969 [Yersinia pestis Z176003]
 gi|320014196|gb|ADV97767.1| tRNA(Ile)-lysidine synthetase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 460

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 23/324 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG DS  LL  L  +       ++   AI + H L   A   V++  
Sbjct: 18  QLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHHGLNPQADSWVKHCM 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C + +I   VV       Q G+ AAAR ARY   S  A      +++TA   DDQ ET
Sbjct: 77  QQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYAQAQQLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIA 251
            DDRF+R  +R  V    L  L  +   F     +   +      L+ + L  +++ +  
Sbjct: 192 QDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQLLDELLAENLQQLQG 247

Query: 252 ISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
             +      +L         +LR   A  G    +P    ++R+ L     +      + 
Sbjct: 248 PDRSLSIDGLLQASMAKRAAILRRWLASLG--APMPSQSQLQRLWLEVAMARQDAEPQLM 305

Query: 304 IGRVVIDRRANFLWITRAVRNLPT 327
           IG   + R    L++   +  + T
Sbjct: 306 IGTRQVRRFRQHLYLLMPLAEITT 329


>gi|238763959|ref|ZP_04624915.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638]
 gi|238697776|gb|EEP90537.1| tRNA(Ile)-lysidine synthase [Yersinia kristensenii ATCC 33638]
          Length = 461

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/331 (24%), Positives = 134/331 (40%), Gaps = 20/331 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            H+LV  SGG DS  LL  L  +  D+    +   AI + H L   A   VR+    C +
Sbjct: 23  RHVLVGFSGGLDSSVLLHLLVCL-RDKLIPDLMIRAIHIHHGLNPLADTWVRHCQQQCEQ 81

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   VV        TG+ AAAR  RY   + H       +++TA   DDQ ET  +  
Sbjct: 82  WNIPLEVVRVNIDARHTGIEAAARTVRYQAFASHLAAN--EVLVTAQHLDDQCETFLLAL 139

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN DDRF
Sbjct: 140 KRGSGP--AGLSAMAAKMPFAHS-QLWRPLLAFSRETLENYAQVQRLQWIEDDSNQDDRF 196

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLIPKYLTVHMRSIIAISQDIL 257
           +R  +R  +    L  L  +   F     +  +  A    +   L       +  +   L
Sbjct: 197 DRNFLRLRI----LPLLTQRWPHFAQAAARSASLCAEQEQLLDELLADNLQQLQNADGAL 252

Query: 258 NIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVID 310
           +I+  LL   ++ +A     + GG   +P    ++R+ L     +      + +G   + 
Sbjct: 253 SIEGLLLASEVKRAAILRRWLAGGGALMPSQSQLQRLWLEVAMARQDAEPQLILGTHQVR 312

Query: 311 RRANFLWITRAVRNLP-TLILYPEETTVWDG 340
           R   +L++   +  +    + + +     DG
Sbjct: 313 RFRQYLYLLSPLAEIRIPHLSWAKVQAAPDG 343


>gi|332160611|ref|YP_004297188.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606911|emb|CBY28409.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664841|gb|ADZ41485.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 461

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 151/389 (38%), Gaps = 44/389 (11%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG DS  LL  L  +  D+    +   AI + H L   A   V++  
Sbjct: 18  QLGEQRHVLVGFSGGLDSSVLLHLLVCL-RDQLIPDLMIRAIHIHHGLNPLADSWVKHCQ 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C + +I   VV         G+ AAAR  RY   + H  T    +++TA   DDQ ET
Sbjct: 77  QQCEQWKIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLATN--EVLVTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLWRPLLVFSRETLENYAQVQRLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHMR 247
            DDRF+R  +R  +    L  L  +   F     +     A        L+   L     
Sbjct: 192 QDDRFDRNFLRLKI----LPLLTQRWPHFAQATARSAGLCAEQEQLLDELLADSLQQLQN 247

Query: 248 SIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
           +  A+S + +L         +LR   A  G   ++P    ++R+ L     +      ++
Sbjct: 248 AEGALSVEGLLVASEAKRAAILRRWLAQWG--AAMPSQSQLQRLWLEVAMARQDAEPQLT 305

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
           +G   + R   +L++   +  +                 +  +L  + +Q G  S     
Sbjct: 306 LGAHQVRRFRQYLYLLSPLTEI-----------------RIPHLPWATVQAGSGSVPVVP 348

Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAP 392
            P  +P  +   +  +    EGG+ L AP
Sbjct: 349 APLILPAGLGTLSFIT----EGGQALKAP 373


>gi|330860915|emb|CBX71195.1| tRNA(Ile)-lysidine synthase [Yersinia enterocolitica W22703]
          Length = 461

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 151/389 (38%), Gaps = 44/389 (11%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG DS  LL  L  +  D+    +   AI + H L   A   V++  
Sbjct: 18  QLGEQRHVLVGFSGGLDSSVLLHLLVCL-RDQLIPDLMIRAIHIHHGLNPLADSWVKHCQ 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C + +I   VV         G+ AAAR  RY   + H  T    +++TA   DDQ ET
Sbjct: 77  QQCEQWKIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLATN--EVLVTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLWRPLLVFSRETLENYAQVQRLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHMR 247
            DDRF+R  +R  +    L  L  +   F     +     A        L+   L     
Sbjct: 192 QDDRFDRNFLRLKI----LPLLTQRWPHFAQATARSAGLCAEQEQLLDELLADSLQQLQN 247

Query: 248 SIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
           +  A+S + +L         +LR   A  G   ++P    ++R+ L     +      ++
Sbjct: 248 AEGALSVEGLLVASEAKRAAILRRWLAQWG--AAMPSQSQLQRLWLEVAMARQDAEPQLT 305

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
           +G   + R   +L++   +  +                 +  +L  + +Q G  S     
Sbjct: 306 LGAHQVRRFRQYLYLLSPLTEI-----------------RIPHLPWATVQAGSGSVPVVP 348

Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAP 392
            P  +P  +   +  +    EGG+ L AP
Sbjct: 349 APLILPAGLGTLSFIT----EGGQALKAP 373


>gi|194443631|ref|YP_002039476.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|254789045|sp|B4SV18|TILS_SALNS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|194402294|gb|ACF62516.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 430

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 144/402 (35%), Gaps = 41/402 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R 
Sbjct: 15  RILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCERW 72

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +
Sbjct: 73  QVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALK 130

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD ++
Sbjct: 131 RGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYD 187

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  L
Sbjct: 188 RNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTL 242

Query: 258 NIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVID 310
            +   +    +R +A     +      +P   ++ER+       +     C+  G   I 
Sbjct: 243 RLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREIR 302

Query: 311 RRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
           R  + LW  ++V     T + +P   T          L   L  +      +   P    
Sbjct: 303 RYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEE 355

Query: 370 PIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
            +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 356 SVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|163738352|ref|ZP_02145767.1| PP-loop family protein [Phaeobacter gallaeciensis BS107]
 gi|161388273|gb|EDQ12627.1| PP-loop family protein [Phaeobacter gallaeciensis BS107]
          Length = 386

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 161/389 (41%), Gaps = 31/389 (7%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW--- 89
           M L+  LH   +D     ++    +VDH LR T+ +E + V+   ++L +AH ++ W   
Sbjct: 1   MALMHLLHECFADVG---VEICVATVDHGLRPTSGEEAQMVAGAAAKLGMAHDILQWCDR 57

Query: 90  KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149
             +     L   AR ARYAL++  A+  + + +   HT DDQ ET+ MR  R     G+ 
Sbjct: 58  PTAGQAGNLQEQARNARYALLTSWAQLNDISTVALGHTADDQAETLLMRLGRSSGVSGLS 117

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
                  +     + + RP L   RE++R++L  R   W EDPSN D RFERVRVR+ + 
Sbjct: 118 AMSRSRAME---GVTLLRPLLEVTREELRAYLRTRECCWVEDPSNEDARFERVRVRQAME 174

Query: 210 -----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                 + +  L    +     R  ++    +       V   +I+   +    +   + 
Sbjct: 175 VLEPLGLTVERLAAVARNMGAAREALDWYTFLAARDMAEVCDGAIVIDQRQFRTLPDEIA 234

Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
             LL  S     G +  P    M +    ++ G  G  ++G   +  RA   WI R  + 
Sbjct: 235 HRLLVRSVQWVSGAVHPPRRDPMIKARDAVRHG--GSFTLGGCRMITRAQRTWICREYKP 292

Query: 325 LPTLILYPEETTVWDGRYQFQNL---SDSLIQIGPQS------YRKADVPSGI----PPI 371
           +   +  P +  +WD R++          +  +GP        +R+ +VP  +    P +
Sbjct: 293 VAEEVALPGK--IWDQRWRVFGGEVQDHEVRALGPAGLLHCPDWRQTEVPGAVLQATPAV 350

Query: 372 IAQRALSSMPSKEGGKPLLAPFSRFMTKF 400
             Q  L + P    G    A   +   +F
Sbjct: 351 WKQDELIAAPLAGNGNGWTAELVQNSEEF 379


>gi|16763626|ref|NP_459241.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990123|ref|ZP_02571223.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168264644|ref|ZP_02686617.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|61216700|sp|Q8ZRN5|TILS_SALTY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|16418741|gb|AAL19200.1| cell cycle protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205331423|gb|EDZ18187.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205346914|gb|EDZ33545.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|267991927|gb|ACY86812.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|312911206|dbj|BAJ35180.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225169|gb|EFX50229.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323128556|gb|ADX15986.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987188|gb|AEF06171.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 430

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|197249380|ref|YP_002145241.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|254789042|sp|B5F8V0|TILS_SALA4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|197213083|gb|ACH50480.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 430

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|269958448|ref|YP_003328235.1| putative ATPase [Anaplasma centrale str. Israel]
 gi|269848277|gb|ACZ48921.1| putative ATPase [Anaplasma centrale str. Israel]
          Length = 447

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 91/408 (22%), Positives = 158/408 (38%), Gaps = 33/408 (8%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           SL   +   VAVSGG DSM LL  +      ++  +     ++V+H  R  A  E R V 
Sbjct: 18  SLDLGSDYAVAVSGGVDSMTLLNLVGMFHKTQATSRP--IVLTVNHGFRAEADYETRCVQ 75

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                L +   ++ W    P       ARE RY L+ +     +   ++TAH   DQ ET
Sbjct: 76  KRALELGLECRILRWGGYIPSKS-QEIAREIRYGLLHQWCVEHSVKFLLTAHNKSDQAET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V M  +R     G  LSGM +  ++  N+ I RP L   R++I  +  Q  + W EDPSN
Sbjct: 135 VLMHLERGSGVDG--LSGMHERSVFG-NITICRPLLNFTRQEILQYATQERLFWVEDPSN 191

Query: 195 TDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            D ++ R   R  + +     + +  L             + + V   +   L       
Sbjct: 192 QDSKYRRTFFRNLIAESKNPGVIIERLCRTTSHMYRALSCILHYVRSSLDDCLEFSPLGF 251

Query: 250 IAI-SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRV 307
           I I SQ++ ++   +   LL +S    GG+   P Y S   ++  ++ G      ++   
Sbjct: 252 ITIKSQELRSVPEEIASRLLLLSLMAMGGKDHKPRYSSFWPILTQMRQGGDFTPRTLHGC 311

Query: 308 VIDRRANFLW-ITRAVRNLPTLILYPEETTV--WDGRY--QFQNLSDSLIQIGP------ 356
            + + ++  + I R +  +   I       +  WD R+  +   + ++    GP      
Sbjct: 312 KVFKESDGNFSIVRELARIEGRICVSTTAEIMQWDRRFTIKIVGVHNASHSAGPLSDSQK 371

Query: 357 -------QSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRF 396
                         +P  +   + +     +P    G  +LA P+   
Sbjct: 372 EAHSLYITPLGNGPLPEHL-MHVKRDVARGLPVLAHGDKVLAYPWQNH 418


>gi|315634539|ref|ZP_07889824.1| tRNA(Ile)-lysidine synthetase [Aggregatibacter segnis ATCC 33393]
 gi|315476766|gb|EFU67513.1| tRNA(Ile)-lysidine synthetase [Aggregatibacter segnis ATCC 33393]
          Length = 436

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 132/333 (39%), Gaps = 27/333 (8%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +E     +  L       L+  SGG DS  LL     +   +     +  AI + H L  
Sbjct: 3   LEQFSQQIHQLAPNQTQFLIGFSGGLDSTALLALFAKLREKQ--PHFQLRAIHIHHGLSA 60

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            A     +   +C +  I   +     S  + G+ A AR+ARY  I++  + +    + T
Sbjct: 61  NADAWSAHCQQMCRQFHIPLQIQHVNVS-TENGIEAGARQARYEAIAQ--QILPTEWLAT 117

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH   DQ ET ++  +R    +G+G       +    ++ I RP L   R+ + +F+ Q 
Sbjct: 118 AHHQQDQTETFFLALKRGSGVQGLGAMPSKSNV---YSVPIFRPLLNFSRQQLLAFVQQE 174

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKY 241
            +SW ED SN D++++R  +R  V    L  L  +   F     +          L+ + 
Sbjct: 175 GLSWIEDESNEDNQYDRNFLRNIV----LPELRQRWAHFDSAVQRSAQHCYEQQQLLNEL 230

Query: 242 LTVHMRSIIAISQDILNIDSTL------LFYLLRVSAAICGGQISLPGYRSMERVM---L 292
           L    +  I  +     +             LLR+     G  ++LP    +E+++   +
Sbjct: 231 LAEEYQKNIVKNDRTFQLQHFASYSSVKQRALLRLWLQDWG--VTLPSLVQLEQIISDVI 288

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325
           F K   +    +   ++ R  + L++T    ++
Sbjct: 289 FAKDDAQPQFRLDNNIVRRYQHRLFLTPIFNDI 321


>gi|322616060|gb|EFY12977.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620843|gb|EFY17703.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623806|gb|EFY20643.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627254|gb|EFY24045.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630561|gb|EFY27325.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638221|gb|EFY34922.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640706|gb|EFY37357.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645510|gb|EFY42037.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648197|gb|EFY44664.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322657147|gb|EFY53430.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657517|gb|EFY53789.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663837|gb|EFY60037.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666670|gb|EFY62848.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672172|gb|EFY68284.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676517|gb|EFY72588.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679391|gb|EFY75436.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686282|gb|EFY82266.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323193462|gb|EFZ78670.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197516|gb|EFZ82651.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201215|gb|EFZ86284.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209610|gb|EFZ94543.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212138|gb|EFZ96962.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216443|gb|EGA01169.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223367|gb|EGA07702.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225928|gb|EGA10148.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228531|gb|EGA12660.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236856|gb|EGA20932.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239644|gb|EGA23691.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242309|gb|EGA26338.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249971|gb|EGA33867.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252401|gb|EGA36252.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255684|gb|EGA39437.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262879|gb|EGA46429.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265365|gb|EGA48861.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271848|gb|EGA55266.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 430

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLAGDLTDCI-TAEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPFWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|300715415|ref|YP_003740218.1| tRNA(Ile)-lysidine synthase [Erwinia billingiae Eb661]
 gi|299061251|emb|CAX58360.1| tRNA(Ile)-lysidine synthase [Erwinia billingiae Eb661]
          Length = 433

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 103/431 (23%), Positives = 174/431 (40%), Gaps = 56/431 (12%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++    + L    H+LV  SGG DS  LL  L ++ + R  G +   AI + H L   A 
Sbjct: 2   AMHALAQHLAGHQHLLVGFSGGLDSTVLLHQLVTLRAQR--GDLHLRAIHIHHGLNPLAD 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             V +   +C R ++   VV+      + G+ AAAR+ARY   S+H +   A  ++TA  
Sbjct: 60  GWVEHCQQLCQRWQVELVVVNVTLDSREKGVEAAARDARYQAFSDHLRP--AECLLTAQH 117

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET  +  +R       GL+GM    L   +  + RP L   R  + ++ ++  +S
Sbjct: 118 LDDQCETFLLALKRGSGP--AGLAGMPVQSLLGTH-TLLRPLLLQTRGQLEAWAVEHALS 174

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTV 244
           W ED SN D RF+R  +R+ V    +  L  +   F     +   +      L+ + L  
Sbjct: 175 WIEDDSNQDTRFDRNFLRQKV----IPELTSRWPHFAQSVARSATLCGEQEQLLDELLAE 230

Query: 245 HMRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKS 296
            + +++  +       +L +       LLR   A  GG   +P   S++R+       + 
Sbjct: 231 SLGTLVDAAGGLAWAPLLAMSEVRRAALLRRWIASQGG--LMPSKASLQRLWQEVACSRE 288

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL-YPEETT---VWDG------------ 340
                + +GR  + R  + L+       +  +IL +P       + DG            
Sbjct: 289 DAEPRLRLGRFDVRRYRDRLYWLALTEPVTDVILRWPSGEASLRLPDGLGHLLRDDAGIK 348

Query: 341 ------------RYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKP 388
                       R+Q Q       + G ++ +K     GIPP    R     P    G+ 
Sbjct: 349 IRAPLPEEIVSVRFQAQGKFHLTDRAGSRALKKIWQEKGIPPWQRDR----TPLLFYGET 404

Query: 389 LLAPFSRFMTK 399
           L+A    F+T+
Sbjct: 405 LIAAVGVFVTR 415


>gi|293394728|ref|ZP_06639020.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera DSM 4582]
 gi|291422854|gb|EFE96091.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera DSM 4582]
          Length = 436

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 88/404 (21%), Positives = 148/404 (36%), Gaps = 31/404 (7%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           V      L      LVA SGG DS  LL  L  +   R   +++  A+ V H L   A D
Sbjct: 7   VTQLAEQLGEHRQWLVAFSGGLDSSVLLHLLVQLRQRR--PELQLRAVHVHHGLSALADD 64

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            V +    C+  ++   V   +      GL AAAR ARY  +     +     ++TA   
Sbjct: 65  WVAHCQRQCANWQVPLVVQYVQVESRDGGLEAAARTARYQALQRTLSS--GEALLTAQHL 122

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET  +  +R     G+       T+    +  + RP L   R  +  +  ++ + W
Sbjct: 123 DDQCETFLLALKRGSGPTGLAAMATHGTL---GDSPLLRPLLGVSRRQLEQYAARQQLDW 179

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            ED SN D RF+R  +R  V    L  L  +   F     +  +  A        +    
Sbjct: 180 IEDDSNQDARFDRNFLRLQV----LPLLTQRWPHFATAAARSASLCAEQELLLDELLAEQ 235

Query: 249 IIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSG 297
           + A++          +    +   F LLR   A+ G   ++P    ++R+       ++ 
Sbjct: 236 LQALTDQEQSIAIDGLQACSAPRRFALLRRWIALAG--FTMPSREQLQRLWDEVALARAD 293

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET---TVWDGRYQFQNLSDSLIQI 354
               + +    + R    L++   + +L  + L   +     + DG          +I  
Sbjct: 294 AEPQLQLVHYQVRRYRQRLYLLPPLADLCAVHLPWFDAATLALPDGLGSISRGEGEIIVR 353

Query: 355 GPQSYRKADVP---SGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395
            PQ  +   V    SG   I  +R   S       +  +AP+ R
Sbjct: 354 APQPQQAVSVRFGVSGRLRIAGRRHSRSAKKLW-QELAIAPWQR 396


>gi|126463079|ref|YP_001044193.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104743|gb|ABN77421.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17029]
          Length = 412

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 101/393 (25%), Positives = 162/393 (41%), Gaps = 31/393 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG DSM LL              I   A++VDH LR  A DE R V+ VC+ L 
Sbjct: 19  LGLAVSGGGDSMALLHLAAE-------AGIATRAVTVDHGLRPEAADEARAVARVCAGLG 71

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H ++ W+    +  LM  AR AR  LI+  A+      +   HT DD  ET  MR  R
Sbjct: 72  VPHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLAR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+        +     +   RP L   RE++R+ L +R  SW EDPSN +  F+R
Sbjct: 132 GAGVDGLAAM---QAVRRAEGMVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFDR 188

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           VRVR+ +  +         L        ++R  ++  +     +   V  R  + ++  +
Sbjct: 189 VRVRQAMESLADLGLRPERLADVAGHLAEVRDALDLQLREAAGRLARVD-RGDVVLAPPV 247

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L +   +L  LLR +          P   ++   M  +  G    V++    +  R   L
Sbjct: 248 LELPPEILRRLLRAALQWVASAEYGPRGPALGEAMRRVFDGT--TVTLHGCRLAPRREGL 305

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS--------LIQIGPQSYRKADVPSGI 368
            I R  + + +++    E   WDGR+  Q    +           +GP+    A  P   
Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQAPGGADFSTDGLETRALGPEGL--ARCPDWR 361

Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400
              + + +L + PS   G  L+ AP +     +
Sbjct: 362 ASGLPRPSLLAAPSVWRGDALVAAPLAGLSNGW 394


>gi|238754787|ref|ZP_04616138.1| tRNA(Ile)-lysidine synthase [Yersinia ruckeri ATCC 29473]
 gi|238706947|gb|EEP99313.1| tRNA(Ile)-lysidine synthase [Yersinia ruckeri ATCC 29473]
          Length = 447

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/327 (24%), Positives = 129/327 (39%), Gaps = 19/327 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M   P   ++     L    H+LV  SGG DS  LL AL  +L DR    +   AI V H
Sbjct: 1   MNHDPHPIIKHIASQLQGARHLLVGFSGGVDSSVLLHALM-MLRDRLLPDLVIRAIYVHH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A     +    C R  IA  +V  +     TG+ AAAR ARY       +  +  
Sbjct: 60  GLNPLADSWGEHCQHQCQRWNIALEMVRVQIDPSDTGIEAAARTARYQAFKT--RLASDE 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TA   DDQ ET  +  +R       GLS M   + +  + +I RP L   R+++  +
Sbjct: 118 VLLTAQHLDDQCETFLLALKRGSGP--AGLSAMAALMPFAHS-YIIRPLLALSRQELERY 174

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLI 238
                ++W ED SN DDRF+R  +R  V    L  L  +   F     +     A    +
Sbjct: 175 ADDYQLTWIEDDSNQDDRFDRNFLRLKV----LPTLSERWPHFSRATARSAELCAEQEQL 230

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERV---M 291
              L       +      L+I        ++ +A     + G  + +P    ++R+   +
Sbjct: 231 LDELLAEPLQQLQQPDGSLSISGLKAMSDIKRAALLRRWLAGQGVMMPSREQLQRLWDEI 290

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWI 318
              +      + +    I R    L++
Sbjct: 291 ALARLDAEPILQLSNHQIRRFRQHLYL 317


>gi|161612610|ref|YP_001586575.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|254789046|sp|A9N0U0|TILS_SALPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|161361974|gb|ABX65742.1| hypothetical protein SPAB_00301 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 430

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 144/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|168823094|ref|ZP_02835094.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205340604|gb|EDZ27368.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320084490|emb|CBY94283.1| cell cycle protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 430

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 145/403 (35%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC+R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCAR 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDREI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|198244025|ref|YP_002214197.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|254789043|sp|B5FJ36|TILS_SALDC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|197938541|gb|ACH75874.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326621940|gb|EGE28285.1| tRNA(Ile)-lysidine synthase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 430

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 146/403 (36%), Gaps = 41/403 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A+  VR+   VC+R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHAESWVRHCETVCAR 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R       L  L  +   F     +   +      L+ + L   +   I  ++  
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGT 241

Query: 257 LNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVI 309
           L +   +    +R +A     +      +P   ++ER+       +     C+  G   I
Sbjct: 242 LRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEI 301

Query: 310 DRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
            R  + LW  ++V     T + +P   T          L   L  +      +   P   
Sbjct: 302 RRYQSQLWWIKSVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREE 354

Query: 369 PPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 355 ESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 397


>gi|332559126|ref|ZP_08413448.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N]
 gi|332276838|gb|EGJ22153.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides WS8N]
          Length = 412

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 99/393 (25%), Positives = 164/393 (41%), Gaps = 31/393 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG DSM LL              I   A++VDH LR  A DE R V+ VC+ L 
Sbjct: 19  LGLAVSGGGDSMALLHLAAE-------AGIATRAVTVDHGLRPEAADEARAVARVCAGLG 71

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H ++ W+    +  LM  AR AR  LI+  A+      +   HT DD  ET  MR  R
Sbjct: 72  VPHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLAR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+        +     +   RP L   RE++R+ L +R  SW EDPSN +  F+R
Sbjct: 132 GAGVDGLAAM---QAVRRAEGMVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFDR 188

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           VR+R+ +  +         L        ++R  ++  ++    +   V  R  + ++  +
Sbjct: 189 VRMRQAMESLADLGLRPERLADVAGHLAEVRDALDLQLSEAAGRLARVD-RGDVVLAPPV 247

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L +   +L  LL+ +          P   ++   M  +  G    V++    +  R   L
Sbjct: 248 LELPPEILRRLLQAALQWVASAEYGPRGPALGEAMRRVFDGT--TVTLHGCRLAPRREGL 305

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS--------LIQIGPQSYRKADVPSGI 368
            I R  + + +++    E   WDGR+  Q    +        +  +GP+    A  P   
Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQAPGGADFSTDGLEIRALGPEGL--ARCPDWR 361

Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400
              + + +L + PS   G  L+ AP +     +
Sbjct: 362 ASGLPRPSLLAAPSVWRGDALVAAPLAGLSNGW 394


>gi|304396663|ref|ZP_07378544.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. aB]
 gi|304356172|gb|EFM20538.1| tRNA(Ile)-lysidine synthetase [Pantoea sp. aB]
          Length = 439

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 137/334 (41%), Gaps = 23/334 (6%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            F   L   A ++VA SGG DS  LL  L          +    A+ V H L   A    
Sbjct: 5   AFDAMLQPDAALVVAFSGGLDSTVLLHQLRGWQQQ--HPESHLRALHVHHGLSPNADCWA 62

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +   VC + ++   V+       + G+ AAAR ARY  +S  A  +   +++TA   DD
Sbjct: 63  AHCLSVCEQWQLPCEVLHVTVDGRENGIEAAARTARYQALS--AALLPGEVLLTAQHLDD 120

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET  +  +R     G+        +    +  + RP L   R+ + ++     + W E
Sbjct: 121 QCETFMLALKRGSGPAGLAAMPAARAL---GSHQLLRPLLNQSRQSLETYARTHQLVWIE 177

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMR 247
           D SN D R++R  +R+ +    L ALY +   F +       + +    L+ + LT  + 
Sbjct: 178 DESNQDLRYDRNFLRQRL----LPALYQRWPHFAEATARSAALCSEQEQLLDELLTGQLN 233

Query: 248 SIIAISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERV---MLFLKSGKRG 300
            +I      L+    ++   LR +A     I G    +P   +++R+   ++  +   + 
Sbjct: 234 ELIQ-PDGSLHFPPLMVMSELRANALLRRWIAGQGGRMPSREALKRIRDEVMASRGDAQP 292

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP-TLILYPE 333
            +  G+  + R    L+      +L  T + +P+
Sbjct: 293 KLRFGQAELRRYRQQLYWLPLRSSLRYTELAWPD 326


>gi|123443466|ref|YP_001007439.1| tRNA(Ile)-lysidine synthetase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090427|emb|CAL13295.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 461

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 150/389 (38%), Gaps = 44/389 (11%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG DS  LL  L  +  D+    +   AI + H L   A   V++  
Sbjct: 18  QLGEQRHVLVGFSGGLDSSVLLHLLVCL-RDQLIPDLMIRAIHIHHGLNPLADSWVKHCQ 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C + +I   VV         G+ AAAR  RY   + H  T    +++TA   DDQ ET
Sbjct: 77  QQCEQWKIPLEVVRVTIDARHAGIEAAARTVRYQAFASHLATN--EVLVTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE +  +   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLWRPLLTFSRETLEHYAQVQRLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHMR 247
            DDRF+R  +R  +    L  L  +   F     +     A        L+   L     
Sbjct: 192 QDDRFDRNFLRLRI----LPLLTQRWPHFAQATARSAGLCAEQEQLLDELLADSLQQLQN 247

Query: 248 SIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
           +  A+S + +L         +LR   A  G   ++P    ++R+ L     +      ++
Sbjct: 248 AEGALSVEGLLVASEAKRAAILRRWLAQWG--AAMPSQSQLQRLWLEVAMARQDAEPQLT 305

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
           +G   + R   +L++   +  +                 +  +L  + +Q G  S     
Sbjct: 306 LGAHQVRRFRQYLYLLSPLTEI-----------------RIPHLPWAKVQAGSGSLPVVP 348

Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAP 392
            P  +P  +   +  +    EGG+ L AP
Sbjct: 349 APLILPAGLGTLSFIT----EGGQALKAP 373


>gi|227115135|ref|ZP_03828791.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 455

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 129/327 (39%), Gaps = 25/327 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL+A SGG DS  LL  L ++   R   ++   A  + H L   A     +    C R
Sbjct: 27  GSILLAYSGGLDSSVLLHLLVAL---RQRSELPIRAAYIHHGLNPLADSWAEHCRQQCER 83

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++  + +S        G+ AAAR ARY  +  H +  +   ++TA   DDQ ET  +  
Sbjct: 84  WQVPFTSLSVTVEAQNGGIEAAARTARYQALRAHLQ--DGETLLTAQHLDDQSETFLLAL 141

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+       T+    +  + RP L   R  + ++  +  + W ED SN D+RF
Sbjct: 142 KRGSGPAGLSAMAAQSTL---GHHRLVRPLLGISRLQLEAYAQRNQLDWIEDDSNQDERF 198

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254
           +R  +RR +    L  L  +   F     +     A        +   S+ A+ Q     
Sbjct: 199 DRNFLRRQI----LPRLTQRWPHFSSAVARSAQLCAEQEQLLDELLEASLQALCQPDGAL 254

Query: 255 ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV 308
               ++ +     F LLR   A  G    +P    ++R+   +   +      + + ++ 
Sbjct: 255 SIDGLVTLSPVRRFALLRRWLAQQGAM--MPAREQLQRLWDEVATSRQDAEPVLQLNQMQ 312

Query: 309 IDRRANFLWITRAVRNLPTLILYPEET 335
           + R    L++   + +L   I+  +  
Sbjct: 313 VRRFRQHLYLLPLMPSLKDPIIPWQSP 339


>gi|312898239|ref|ZP_07757630.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359]
 gi|310620736|gb|EFQ04305.1| tRNA(Ile)-lysidine synthetase [Megasphaera micronuciformis F0359]
          Length = 461

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 131/350 (37%), Gaps = 24/350 (6%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M    I  V  F +    L     ++VAVSGG DS+ LL  L ++    S   +   A  
Sbjct: 1   MMDDLIRKVESFCKKENLLDRQDTVIVAVSGGPDSIALLHILAALQDRWS---LHLVAAY 57

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEH 113
           V+H LR  A +E  +V      +                K    +  A R  RYA  SE 
Sbjct: 58  VNHGLRAAAFEEEVFVESQARAVGAEFYCRRIDAAAIAEKQGLSIETAGRNERYAFFSEL 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+   A  I   H  DDQ ETV M   R     G G            N  I RP L   
Sbjct: 118 AEKTGAVRIAVGHHEDDQAETVLMHLLRGGGVSGAGAM-------KAKNGLIIRPLLCVP 170

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKV 230
           R+DI + L + N+ W  D SN    + R R+R  +  +       +   + +F  +  + 
Sbjct: 171 RQDILTALNEVNLPWRVDESNESREYLRNRIRHDIMPLLKNINPQVTAALNRFASISRQE 230

Query: 231 NNAVAMLIPKYLTV----HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
           N  +     K L +    + R        + ++   L   ++R++       I  P + +
Sbjct: 231 NMYMENEAVKQLKLAERRNERGFYLDIPILTDLHEALQRRVVRLAVQEMTKDIYAPDFAA 290

Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
           +ER++   ++     V    +++ RR   L  TR V    TL     E  
Sbjct: 291 VERILGLCRATSGKQVRFKDLIVYRRGRGLCFTRGVARKATLFTTDREEV 340


>gi|148285169|ref|YP_001249259.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong]
 gi|166988062|sp|A5CFP2|TILS_ORITB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|146740608|emb|CAM81262.1| tRNA(Ile)-lysidine synthetase [Orientia tsutsugamushi str. Boryong]
          Length = 441

 Score =  247 bits (630), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 154/357 (43%), Gaps = 21/357 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + +AVSGG+DS+ L+  L    +++  G  + + +++DH LR  +  E  YVS +C  +
Sbjct: 22  KLAIAVSGGTDSLALM-LLVKHWNEKVKG--EITVLTIDHHLRSESTSEADYVSSICQNI 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           ++ H  + W +      + A AR+ARY L++ + +  +   ++T H  DD +E  ++R  
Sbjct: 79  KLQHVTLHWIHKGITGNIQAQARKARYHLLTNYCQEHDILHLITGHHADDIVENFFIRLL 138

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+        I +  N+ I RP     ++D++ +L Q+NI W  DPSN  +++ 
Sbjct: 139 RGAGLAGLSSH----NIFFVNNVRIIRPLFNITKQDLKKYLEQQNIKWINDPSNNSNKYL 194

Query: 201 RVRVRRFVR------------DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           R +VR  ++            ++    + L           VNN +   +   + ++   
Sbjct: 195 RTQVRDLLKSMLISFQNNFTVELLKKRIMLSQMHLTRALDSVNNEIIHYVVYAVKIYSAG 254

Query: 249 IIAISQDILNIDSTLLFY-LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
              I + +    S    Y +L     I G       + S++ ++L          ++   
Sbjct: 255 FAVIDRKLFRQASPEARYAILSYLLMIVGANTKPQRFSSLQHIILHDIQEYNTYKTLHGC 314

Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ-NLSDSLIQIGPQSYRKAD 363
           +++    ++ I R              + VWD R++   N  ++ + +     +K+D
Sbjct: 315 IVEYSIQYIIIYREFGRCYPRSKVVSNSVVWDYRFKVVDNRKNNRMNLTIDYLKKSD 371


>gi|254454426|ref|ZP_05067863.1| tRNA(Ile)-lysidine synthetase [Octadecabacter antarcticus 238]
 gi|198268832|gb|EDY93102.1| tRNA(Ile)-lysidine synthetase [Octadecabacter antarcticus 238]
          Length = 412

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 113/408 (27%), Positives = 180/408 (44%), Gaps = 31/408 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGGSDS  L+          S  + +   I+VDH LR  A DEV  V+     L 
Sbjct: 10  VVLAVSGGSDSTALMHLAAG-----SIDRARLHVITVDHGLRGVA-DEVALVAAQSEDLA 63

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI-MTAHTFDDQLETVYMRSQ 140
           + HSV++W+    Q  L AAAR  R+A I++ A    A +  MT HT DDQ ETV MR  
Sbjct: 64  LKHSVLNWQ-WDGQGNLQAAARIGRWAAIAQWAADQPADVCCMTGHTHDDQAETVLMRLA 122

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GL+GM         L I RP L+  R D+R++L +  ++W +DPSN D RF+
Sbjct: 123 RGSGV--AGLAGMQSVGATPTGLRICRPLLQETRADLRAWLSEHGVTWSDDPSNDDLRFD 180

Query: 201 RVRVR---RFVRDIDL--HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           RV+ R     + ++ L    L       Q  R ++ +  AM+   ++T  +  ++  +  
Sbjct: 181 RVKARGMQDALGELGLTSDRLVQTAAHMQAARREMTDYAAMIAQSHITQSVGDVVFPATW 240

Query: 256 ILNID-------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
             + D         L F    V     GG    P   +   +    + G+ G  ++   +
Sbjct: 241 PNHGDVAIRLFRHALHFVGGGVGCGGAGGGDYPPRSDATLSLWQAAQDGQGG--TLHGCL 298

Query: 309 IDRRANFLWITRAVRNLPTLILYPEET--TVWDGRYQFQNLSDSLIQ----IGPQSYRKA 362
           +    +   I+R V   P    +P       WD R+    +S +  Q    +        
Sbjct: 299 VSVEDDHWRISREVAATPAPTSWPNRNRDLRWDNRWLLSEISGANTQGDLTVRALGDAIK 358

Query: 363 DVPSGIPPIIAQRALSSMPSK-EGGKPLLAPFSRFMTKFDLPVAYAFS 409
           DVP+     + +R+L + P+  EG   + AP +   + FD  +   F+
Sbjct: 359 DVPNWRDVGLPRRSLMASPAVFEGESLVAAPIAGHQSGFDARIVADFA 406


>gi|238796629|ref|ZP_04640136.1| tRNA(Ile)-lysidine synthase [Yersinia mollaretii ATCC 43969]
 gi|238719607|gb|EEQ11416.1| tRNA(Ile)-lysidine synthase [Yersinia mollaretii ATCC 43969]
          Length = 437

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 83/320 (25%), Positives = 135/320 (42%), Gaps = 19/320 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L      LV  SGG DS  LL  L  +  D+   ++K  AI + H L   A D V++  
Sbjct: 4   QLGGHRDFLVGFSGGLDSSVLLHLLVCI-RDQLIPELKVRAIHIHHGLNPLADDWVKHCQ 62

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C R +I   VV         G+ AAAR ARY   S H       +++TA   DDQ ET
Sbjct: 63  QQCERWQIPLEVVRVSIDPRHNGIEAAARTARYQAFSSHLAAN--EVLLTAQHLDDQCET 120

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + S+   + + W ED SN
Sbjct: 121 FLLALKRGSGP--AGLSAMAARMPFAHS-QLLRPLLTFSREMLESYARTQQLQWIEDDSN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            DDRF+R  +R  V  + L+  +    +       +      L+ + L   ++ +     
Sbjct: 178 QDDRFDRNFLRLRVLPL-LNHRWPHFAQATARSASLCAEQEQLLDELLADSLQQL-KNHH 235

Query: 255 DILNIDSTLLF------YLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305
             L+I+  +L        +LR   A  G   S+P    ++R+ L     +      +++G
Sbjct: 236 SALSIEGLILATDAKRGAILRRWLA--GEGASMPSQSQLQRLWLEVAMARPDAEPQLTLG 293

Query: 306 RVVIDRRANFLWITRAVRNL 325
              + R    L++  A++ +
Sbjct: 294 AYQVRRFRQHLYLIPALKEI 313


>gi|254475444|ref|ZP_05088830.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11]
 gi|214029687|gb|EEB70522.1| tRNA(Ile)-lysidine synthetase [Ruegeria sp. R11]
          Length = 383

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 164/375 (43%), Gaps = 17/375 (4%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL  LH   +D     +     +VDH LR+ + DE   V+   ++L ++H V+ W++ 
Sbjct: 1   MALLHLLHDCFADVG---VTLCVATVDHGLRDGSHDEAMMVAAEAAKLGLSHDVLEWRDR 57

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
                L   AR ARY L++  A+  + ++I   HT DDQ ET+ MR  R       GLS 
Sbjct: 58  PEGGNLQDEARNARYGLLTNWARINDLSVIALGHTADDQAETLLMRLGRASGV--SGLSA 115

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           M      D  + + RP L   R+ +R++L ++ ++W +DPSN D RFER+R+R+ +  + 
Sbjct: 116 MPRMRAMD-GVSLMRPLLDVTRDQLRAYLRKKQVAWVDDPSNEDTRFERIRIRQAMASLA 174

Query: 213 -----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
                +  L    +     R  ++    +   + L +   +I+   ++   +   +   L
Sbjct: 175 PIGLTVERLAAVAQNLGAAREALDWYTFLAAREMLEIRDGAIVIDQREFRTLPDEIAHRL 234

Query: 268 LRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT 327
           L  +    GG +  P    M +     + G  G  ++    I  R   +WI R V+ +  
Sbjct: 235 LVRAVQWVGGAVYPPRRDPMMQAQRTARQG--GSFTLAGCRILTRVQKVWICREVKRVAD 292

Query: 328 LILYPEETTVWDGRYQFQNLSDSLIQI-GPQSYRKADVPSGIPPIIAQRALSSMPSKEGG 386
            ++ P  T  WDGR++         Q+    S   A VP      +    L + P+    
Sbjct: 293 EVVEPGAT--WDGRWRIYGGDIHGHQVRALGSVGLAQVPDWRSTGLPGPVLEATPAVWQN 350

Query: 387 KPLL-APFSRFMTKF 400
             L+ AP + F   +
Sbjct: 351 HHLVAAPSAGFAQGW 365


>gi|170717655|ref|YP_001784732.1| tRNA(Ile)-lysidine synthetase [Haemophilus somnus 2336]
 gi|226695541|sp|B0UUD3|TILS_HAES2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|168825784|gb|ACA31155.1| tRNA(Ile)-lysidine synthetase [Haemophilus somnus 2336]
          Length = 427

 Score =  246 bits (629), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/346 (23%), Positives = 143/346 (41%), Gaps = 23/346 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 +L+  SGG DS  LL  L  +   +    +   AI + H L + A +   +   
Sbjct: 14  FPSHTKLLLGFSGGLDSTVLLSLLAKLRKKQ--PHLSLRAIHIHHGLSQNADNWAIHCRQ 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +C +L I+        + P+ G+ A AREARY  I+ H +     +++TAH   DQ ET 
Sbjct: 72  ICQQLDISFLCEKVTIN-PRKGIEADAREARYQAIANHLQDN--EILVTAHHQQDQTETF 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R    +G+G   +   +    NL I RP L C ++ +  +     +SW ED SN 
Sbjct: 129 LLALKRGSGLQGLGAMQIQSVVF---NLPIFRPLLHCTKQQLEQYAKTEKLSWIEDESNA 185

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D+R+ER  +R  +    L   +  +        +       LI + L      I      
Sbjct: 186 DNRYERNFLRNDILP-KLRQRWQSIDNAVQRSAQHCFEQQQLINELLNDEFNKIYDKFDR 244

Query: 256 ILNIDSTLLFYLLRVSAAICGG----QISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308
            L+I +   + +L+  A +        I +P    ++ +   M+  +  +     +G  V
Sbjct: 245 TLSIANFATYSILKQKALLRTWLQHLHILMPSTIQLDNIMRNMIQAQEDRNPTCRLGNQV 304

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
           + R    L+ T  +++L  + L  +         +  NL D+L +I
Sbjct: 305 LRRYQKRLYATPILQDLSHIRLDIQAN-------ECINLPDNLGEI 343


>gi|322831607|ref|YP_004211634.1| tRNA(Ile)-lysidine synthetase [Rahnella sp. Y9602]
 gi|321166808|gb|ADW72507.1| tRNA(Ile)-lysidine synthetase [Rahnella sp. Y9602]
          Length = 447

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 26/349 (7%)

Query: 8   SVRFFVRSLVYP----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +V F  + L+        + VA SGG DS  LL  L  +  D++   I+  A+ + H L 
Sbjct: 6   TVTFLSKHLLNKIGDARRLCVAFSGGLDSSVLLAGLAEL-RDKALPDIELRALHIHHGLS 64

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           + A D V +    C +  I  SV   +    + G+ AAAR ARY   +E        +++
Sbjct: 65  QFADDWVAHCQTFCQQRDIPFSVAKVQVDAQEGGIEAAARTARYQAFAE--SLTAGEVLL 122

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TA   +DQ ET  +  +R     G+       +        + RPFL   RE +  +  Q
Sbjct: 123 TAQHLNDQCETFMLALKRGSGPAGLSAMSGDSST---HGYRLLRPFLELSREQLEEYAKQ 179

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             + W ED SN D RF+R  +R  +      ALY +   F     +  +  A        
Sbjct: 180 LKLCWIEDDSNRDARFDRNFLRLDI----FPALYQRWPHFAQATARSASLCAEQETLLDE 235

Query: 244 VHMRSIIAIS--QDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFL 294
           +   S+ +++  Q  L+++    F  +R SA     +      +P    ++R+       
Sbjct: 236 LLSESLTSLTDEQGSLSVERLKAFSAVRRSALLRRWLALRGARMPSREQLQRIWDEVALS 295

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDG 340
           +   +  + +G++V+ R    L++    R+L   IL     E+ T+ DG
Sbjct: 296 REDAQAQLVLGKMVVRRFRGRLYVLPERRSLKDQILCWDPAEKLTLPDG 344


>gi|114771183|ref|ZP_01448603.1| PP-loop family protein [alpha proteobacterium HTCC2255]
 gi|114548108|gb|EAU50995.1| PP-loop family protein [alpha proteobacterium HTCC2255]
          Length = 423

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 93/385 (24%), Positives = 164/385 (42%), Gaps = 23/385 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +   +I ++VSGG DS+ LL               K    +VDH LR+ + +E + V D+
Sbjct: 24  ISGDNIGLSVSGGGDSIALLYLTKEWACKNDK---KIFVATVDHGLRKESLNEAQTVKDI 80

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C  L I  ++++W +      L  AAR AR  LI   A ++    + T HT DDQ ET  
Sbjct: 81  CRSLGIECTILNWTDWDKSGNLQDAARSARNRLIGNWANSLGLDAVATGHTADDQAETFL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +R  R     G  LSGM  +IL +  LW  RP L   R ++R +L    I+W +DPSN +
Sbjct: 141 LRLARGSGVDG--LSGMASSILKEGMLW-FRPLLEFHRSELRDYLNINKITWFDDPSNEN 197

Query: 197 DRFERVRVRR---FVRDIDLHA--LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            +F+RV++R+   F+ ++ L    L    ++    R  +       I     +     + 
Sbjct: 198 MKFDRVKMRKAQSFLNNMGLTISCLNETAQRMSVARNALELVSKEKIENITEITKMGTVM 257

Query: 252 IS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
           +  ++   +   +   +         G I  P + S+   +  L + K    +I    + 
Sbjct: 258 LDLEEFKLLPVEVQNRIYSHILKWISGSIYRPRFISLTESIKKLLNCK--THTISGCHVT 315

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD----SLIQIGPQSYRKADVPS 366
                  I R V  +     + E+   +DGR+  ++ S     S+  +G    R+   P 
Sbjct: 316 SNGRSAEICREVSKIIKSNSFSEK---FDGRWILESKSSKEELSIGPLGEAGLRQ--FPD 370

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA 391
                +++ ++   P+    + L+A
Sbjct: 371 WRELNMSRISILGSPAIWKDELLIA 395


>gi|113461077|ref|YP_719145.1| cell-cycle protein [Haemophilus somnus 129PT]
 gi|123132098|sp|Q0I3D1|TILS_HAES1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|112823120|gb|ABI25209.1| cell-cycle protein [Haemophilus somnus 129PT]
          Length = 427

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 144/346 (41%), Gaps = 23/346 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 +L+  SGG DS  LL  L  +   +    +   AI + H L + A +   +   
Sbjct: 14  FPSHTKLLLGFSGGLDSTVLLSLLAKLRKKQ--PHLSLRAIHIHHGLSQNADNWAIHCRQ 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +C +L I+        + P+ G+ A AREARY  I+ H +     +++TAH   DQ ET 
Sbjct: 72  ICQQLDISFLCEKVTIN-PRKGIEADAREARYQAIANHLQDN--EILVTAHHQQDQTETF 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R    +G+G   +   +    NL I RP L C R+ +  +     +SW ED SN 
Sbjct: 129 LLALKRGSGLQGLGAMQIQSVVF---NLPIFRPLLHCTRQQLEQYAKTEKLSWIEDESNA 185

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D+R++R  +R  +    L   +  + K      +       LI + L      I      
Sbjct: 186 DNRYDRNFLRNDILP-KLRQRWQHIDKAIQRSAQHCFEQQQLINELLNDEFNKIYDKFDR 244

Query: 256 ILNIDSTLLFYLLRVSAAICGG----QISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308
            L+I +   + +L+  A +        I +P    ++ +   M+  +  +     +G  V
Sbjct: 245 TLSIANFATYSILKQKALLRTWLQHLHILMPSTIQLDNIMRNMIQAQEDRNPTCKLGNQV 304

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
           + R    L+ T  +++L  + L  +         +  NL D+L +I
Sbjct: 305 LRRYQKRLYATPILQDLSHIRLDIQAN-------ECINLPDNLGEI 343


>gi|323495345|ref|ZP_08100423.1| tRNA(Ile)-lysidine synthase [Vibrio brasiliensis LMG 20546]
 gi|323310416|gb|EGA63602.1| tRNA(Ile)-lysidine synthase [Vibrio brasiliensis LMG 20546]
          Length = 439

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 86/394 (21%), Positives = 155/394 (39%), Gaps = 27/394 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS  +L  +     +R   +++  AI V H L   A          C  
Sbjct: 19  KRLVLGLSGGLDSRVMLELMAEYCHNR---QLECLAIHVHHGLSANADQWAMQCQHWCDS 75

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +   +   +       L  +AREARY  I+ H    +  L++T    DDQLET  +  
Sbjct: 76  LGVPLVIERVQLDSKGRSLEESAREARYQAIARHL--NDDDLLLTGQHCDDQLETFLLAL 133

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M   + +  +L I RP L   R+ I  +  Q  +SW ED SN D RF
Sbjct: 134 KRGSGPKG--LSAMAHAMPFASSL-IVRPLLTSTRQQIEEYARQHQLSWVEDESNLDQRF 190

Query: 200 ERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R  +          +Y  +++  +L  +    +  L+    T    S  ++    
Sbjct: 191 DRNFIRHTISPPLIERWPQIYQSVQRTAELCAEQEALLDELLADKFTSVHCSDGSLDITK 250

Query: 257 LN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRR 312
           L      +   L+R+  A  G  + +P    ++ +       +      + I    + R 
Sbjct: 251 LATYSDAVRSRLIRMWLA--GQDVRMPSREQLKLIWPQVACAQQDANPQLVIIDGQVRRY 308

Query: 313 ANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
           A  L++ +  ++L      +  E+T  + D        S +  Q+  Q+         + 
Sbjct: 309 AGRLYLVKQWQSLANWKQAIELEQTCQLPDSLGSLSLRSAANGQLSKQALSN----GKLE 364

Query: 370 PIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
            I   + L++ P   G    L    +   ++D+P
Sbjct: 365 VIFEPQGLTAHPVGRGHSRKL---KKLFQEYDIP 395


>gi|77464237|ref|YP_353741.1| cell cycle protein [Rhodobacter sphaeroides 2.4.1]
 gi|77388655|gb|ABA79840.1| Probable cell cycle protein [Rhodobacter sphaeroides 2.4.1]
          Length = 412

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 99/393 (25%), Positives = 161/393 (40%), Gaps = 31/393 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG DSM LL              I   A++VDH LR  A DE R V  VC+ L 
Sbjct: 19  LGLAVSGGGDSMALLHLAAE-------AGIATRAVTVDHGLRPEAADEARAVGRVCADLG 71

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H ++ W+    +  LM  AR AR  LI+  A+      +   HT DD  ET  MR  R
Sbjct: 72  VPHDILRWEGWDGRGNLMDQARRARLRLIAGWARGAGLEAVALGHTRDDVAETFLMRLAR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+        +     +   RP L   RE++R+ L +R  SW EDPSN +  F+R
Sbjct: 132 GAGVDGLAAM---QAVRRAEGMVWLRPLLGIGREELRADLRRRGASWIEDPSNDNPAFDR 188

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           VR+R+ +  +         L        ++R  ++  +     +   V  R  + ++  +
Sbjct: 189 VRMRQAMESLADLGLRPERLADVAGHLAEVRDALDLQLREAAGRLARVD-RGDVVLAPPV 247

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L +   +L  LL+ +          P   ++   M  +  G    V++    +  R   L
Sbjct: 248 LELPPEILRRLLQAALQWVASAEYGPRGPALGEAMRRVFDGT--TVTLHGCRLAPRREGL 305

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS--------LIQIGPQSYRKADVPSGI 368
            I R  + + +++    E   WDGR+  Q    +           +GP+    A  P   
Sbjct: 306 RIGREWQAVRSVVAAVGER--WDGRWDLQAPGGADFSTDGLETRALGPEGL--ARCPDWR 361

Query: 369 PPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400
              + + +L + PS   G  L+ AP +     +
Sbjct: 362 ASGLPRPSLLAAPSVWRGDALVAAPLAGLSNGW 394


>gi|167767831|ref|ZP_02439884.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1]
 gi|167710570|gb|EDS21149.1| hypothetical protein CLOSS21_02368 [Clostridium sp. SS2/1]
          Length = 480

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 68/316 (21%), Positives = 137/316 (43%), Gaps = 24/316 (7%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ +  V+ F++    +    HI++ VSGG+DS+ LL+ L+ +   R    +  +A+ ++
Sbjct: 10  VNYMNKVKEFIKEKNLIQNGDHIIIGVSGGADSVYLLLILNEL---RESMNLTITAVHIN 66

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
           H +R  A D+ ++V D+C +L I   +          + +  L  A R+ARY   ++  K
Sbjct: 67  HMIRREAVDDQKFVQDLCGQLSILCKIFEIDVKQIAKREKMSLEEAGRKARYDAFAKTMK 126

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             NA  I  AH  +DQ ET   R  R     G G          + +  + RP L  ++E
Sbjct: 127 KYNADKIAIAHHQNDQAETFLYRVVRGTGIYGAGAM-------REKDGNLIRPLLCVKKE 179

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRV 228
           +I  +L +   +W ED SN DD F R ++R  V        +  +  +    +  +++  
Sbjct: 180 EIVKYLKEAGQAWVEDASNQDDAFARNQIRNQVIPRLEMINEQAVEHIGWLCEDIKEVTT 239

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
            + + +     +      +        +L  +  +   +L+       G+      R +E
Sbjct: 240 YLTDQIEESFLRCAKPIGQGFEINCDQLLLENHWIQKQVLKKVLEETAGKKKDLERRHIE 299

Query: 289 RVMLFLKSGKRGCVSI 304
            ++  +++G    +S+
Sbjct: 300 DLLTLVENGTGKRISL 315


>gi|114765728|ref|ZP_01444826.1| Probable cell cycle protein [Pelagibaca bermudensis HTCC2601]
 gi|114541945|gb|EAU44980.1| Probable cell cycle protein [Roseovarius sp. HTCC2601]
          Length = 448

 Score =  245 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 92/404 (22%), Positives = 151/404 (37%), Gaps = 40/404 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +P+ I++AVSGG DSM +L   H+          +   ++VDH LR  A +E   V + C
Sbjct: 24  FPSDIVLAVSGGGDSMAMLTLAHNWA---HVWGTRLWVVTVDHGLRPEAGNEAALVRETC 80

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L   H+ + W+    Q  LM AAR AR  LI         + ++ AHT DD  ET  M
Sbjct: 81  DELGHPHTTLRWR-WDGQGNLMDAARRARLDLIGRW--RGGLSHVLLAHTRDDVAETFLM 137

Query: 138 RSQRDYAEKGMGLS---------------------GMCDTILYDLNLWISRPFLRCRRED 176
           R  R     G+                                   L I RP L  RR +
Sbjct: 138 RLARGSGVDGLSAMTPLREVAETGATPLDPEACDGARPPEAAVPSGLTIVRPCLDMRRAE 197

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +R +L      W EDP+N DD +ER R+R+ +R ++   L  +       R+        
Sbjct: 198 LRHYLRVLKGRWVEDPTNEDDHYERARIRKLLRGLEAEGLGAETLAATAGRMGRAREALR 257

Query: 237 -----LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                   +         +   +D    ++      LL  +          P   ++E +
Sbjct: 258 ARAVWAWEQCGQEGGAGDLVFERDRFAALERDTQLRLLAAALQWVASAEYRPRAAALEGL 317

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL--- 347
           +  L SG  G +           + L + R    +    +   +T +WDGR++  +    
Sbjct: 318 LERLLSGGAGTLM--GCAARAERDRLRVWREYAAVAGTSVTVGDTALWDGRWRVFHPDLR 375

Query: 348 SDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
             ++  +G + +R+A         +       +PS   G+ L A
Sbjct: 376 GHTVQALGEEGWRQAA--PAREAHVPHALALCLPSVWQGETLRA 417


>gi|84389775|ref|ZP_00991327.1| Cell cycle protein MesJ [Vibrio splendidus 12B01]
 gi|84376876|gb|EAP93750.1| Cell cycle protein MesJ [Vibrio splendidus 12B01]
          Length = 444

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 91/409 (22%), Positives = 152/409 (37%), Gaps = 36/409 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +S + P  ++VA SGG DS  LL              I+  A+ V H L + A       
Sbjct: 14  QSALKPNRLIVAFSGGVDSRVLLELAAQYAQTHG---IECCAVHVHHGLSKNADHWAEQC 70

Query: 74  SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              C  L ++ +V     +      +   AR+ARY    +H       +++T    DDQL
Sbjct: 71  QTWCDALSVSLAVERVSLDIDSGESVEKLARDARYNAFQKHLSF--GDVLITGQHIDDQL 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M   + +  N  I RP L   R DI        ++W ED 
Sbjct: 129 ETFLLALKRGSGPKG--LSSMAKMMPFA-NAHIVRPLLSVTRTDIEGAARDMALTWVEDE 185

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK-------YLTVH 245
           SN D RF+R  +R  V       L  +   F+D   +     A            +    
Sbjct: 186 SNQDLRFDRNFIRHQVTPT----LTERWPNFRDAVSRSAQLCAEQELLLDELLESHFQQA 241

Query: 246 MRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
           +     +S + L+  S LL   LLR+  + C     +P  + ++ +       ++     
Sbjct: 242 LGDSQNLSVEALSQHSDLLRARLLRMWLSHCNQ--PMPSKKQLKLIWDEVACAQADANPK 299

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYP---EETTVWDG----RYQFQNLSDSLIQI 354
           + +    + R  + L++ R  ++L     +    E  T+ DG    R             
Sbjct: 300 LVLNDAEVRRFNHQLYLVRETKDLSDWQSHLSMGESLTLPDGLGELRLNSALSDGESNNR 359

Query: 355 GPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
             QS+  +D  + +  I     LS+ P   G    L    +   ++ +P
Sbjct: 360 DVQSFSLSDTSATLRVIFNPEGLSAHPVGRGHSRKL---KKLFQEYQVP 405


>gi|146310390|ref|YP_001175464.1| tRNA(Ile)-lysidine synthetase [Enterobacter sp. 638]
 gi|254789036|sp|A4W6T3|TILS_ENT38 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|145317266|gb|ABP59413.1| tRNA(Ile)-lysidine synthetase [Enterobacter sp. 638]
          Length = 426

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 79/406 (19%), Positives = 136/406 (33%), Gaps = 35/406 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +S+     +LV  SGG DS  LL  L           ++  AI V H L   A   V +
Sbjct: 7   AQSVFPYRQLLVGFSGGLDSTVLLHRLMLWREQ--EPDVQIRAIHVHHGLSSNADHWVAH 64

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C    I   V   K      G  A AR+ARY    +  +      ++TA   DDQ 
Sbjct: 65  CESLCKSWHIPLIVERVKLRDEGLGTEAQARKARYLAFEKTLQA--GEALVTAQHLDDQC 122

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G+                + RP L   R  +  +    N+ W +D 
Sbjct: 123 ETFLLALKRGSGPAGLSAM---PVRTEFAGSQLIRPLLGETRTSLEKWAQDYNLCWIDDE 179

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN DDR++R  +R  V    L  L  +   F D   +     A        +    + ++
Sbjct: 180 SNQDDRYDRNFLRLRV----LPLLSERWPHFADATARSAALCAEQESLLDELLTEELASV 235

Query: 253 --SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVS 303
             ++  L I+       +R +A     +      +P    + R+       +      + 
Sbjct: 236 ISTEGRLRIEPLEAMSPVRRAALIRRWLAAHHAQMPSRTMLNRIWEEVALAREDATPRLH 295

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
           +G   + R    LW  +    +   I+   + +V         L    +      + +  
Sbjct: 296 LGGFEVRRYKGELWWVKYQPTMIDQIIEWRDPSV------TLMLPQGSVCFADGGHIRLP 349

Query: 364 VPSGIPPIIAQR-ALSSMPSKEGGKPL--------LAPFSRFMTKF 400
            P     I  +   +  +  + GG+ L        + P+ R  T  
Sbjct: 350 NPDEQVTIRFKACGILHIVGRHGGRKLKKIWQEYNIPPWLRDTTPL 395


>gi|251792238|ref|YP_003006960.1| tRNA(Ile)-lysidine synthase [Aggregatibacter aphrophilus NJ8700]
 gi|247533627|gb|ACS96873.1| tRNA(Ile)-lysidine synthase [Aggregatibacter aphrophilus NJ8700]
          Length = 436

 Score =  245 bits (626), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 136/333 (40%), Gaps = 27/333 (8%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +E     +R L       L+  SGG DS  LL     +  ++     +  AI + H L  
Sbjct: 3   LEQFSQRLRQLAPNQTQFLIGFSGGLDSTALLALFAKLRENQ--PHFQLRAIHIHHGLSS 60

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            A     +  ++C + +I   +     +    G+ A AR+ARY  I++H        + T
Sbjct: 61  NADAWATHCENLCRQFQIPLLIQRVNVNI-ANGIEAGARQARYEAIAQHILPQ--EWLAT 117

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH   DQ ET ++  +R    +G+       T+    N+ I RP L   R+ + +F+ Q+
Sbjct: 118 AHHLQDQTETFFLALKRGSGLQGLSAMQAQSTV---YNVPIFRPLLSFSRQQLLNFVQQQ 174

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKY 241
            I+W ED SN D++++R  +R  +    L  L  +   F     +          L+ + 
Sbjct: 175 GITWIEDESNADNQYDRNFLRNQI----LPDLRQRWGHFDSAVQRCAQHCYEQQQLLNEL 230

Query: 242 LTVHMRSIIAIS------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML--- 292
           L    +  +  +      Q   +  +     LLR+    CG  +++P    +E ++    
Sbjct: 231 LAEEYQKNVDKTDRTFKVQHFADYSAIKQRALLRLWLQECG--VAMPSLVQLEHLISDVV 288

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325
           F K   +    +   ++ R  + L++T    ++
Sbjct: 289 FAKPDTQPQFRLENNIVRRYQHKLFLTPIFADI 321


>gi|152980618|ref|YP_001353795.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille]
 gi|151280695|gb|ABR89105.1| MesJ cell cycle protein [Janthinobacterium sp. Marseille]
          Length = 462

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 142/333 (42%), Gaps = 17/333 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A I +A SGG DS  LL  LH+    +   +I+  A  V H L   A D + +    C
Sbjct: 22  AKAKIALAYSGGLDSAALLHLLHAYGLAQ---QIEIFAFHVHHGLSPNADDWLAHCRAQC 78

Query: 78  SRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           + L +       + ++  + G+  AAR++RYA + +  +     L++TAH  DDQ ETV 
Sbjct: 79  AALGVVFDARQVQVTRQGKNGIEEAARQSRYAALGDMCRAHGVPLLLTAHHLDDQAETVL 138

Query: 137 MRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           ++  R     G+           +L D NL + RP L+ RRED+++++    I + ED S
Sbjct: 139 LQLLRGSGVAGLSGMDSANHAADLLGDANLLMGRPLLQVRREDLQAYVTAHAIQFVEDES 198

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D R+ R  +R  V            ++F        +A  +LI        + +    
Sbjct: 199 NLDPRYARNALRHQVMPKLEEYFPGFQQRFARTAEHAQSAQRLLIELAAEDLQQCLDGEC 258

Query: 254 QD---ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307
            D   +    +  +  +LR    + G  + +P    +  +   +L  K   + CV+    
Sbjct: 259 VDVTKLRQFSADRIDNMLRYWFGLRG--VRMPSTAWLNEMRTQLLEAKHDAQLCVTHADC 316

Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340
            I R  + ++IT      P L+L P  +  W G
Sbjct: 317 HIRRHRDRVYITPKFD--PDLLLQPPRSFNWQG 347


>gi|291616365|ref|YP_003519107.1| TilS [Pantoea ananatis LMG 20103]
 gi|291151395|gb|ADD75979.1| TilS [Pantoea ananatis LMG 20103]
          Length = 435

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 132/354 (37%), Gaps = 24/354 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F   L     ++VA SGG DS  LL  L +    R   + +  A+ V H L   A     
Sbjct: 4   FDALLKENDALVVAFSGGLDSTVLLHQLRAWQQAR--PQSRLRALHVHHGLSPNADSWAA 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +   +C R +I   V+  + +    G+ AAAR+ RY  + +         ++TA   DDQ
Sbjct: 62  HCLCLCERWQIPCEVLRVQVTDQGQGIEAAARQVRYQALGQALCA--DEKLLTAQHLDDQ 119

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ +  +R     G+       T        + RP L   R  +  +     + W ED
Sbjct: 120 CETLLLALKRGSGPAGLAAMPAATTF---AGHALLRPLLNHSRLSLEQYAEAHQLVWVED 176

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            SN D R++R  +R+ +    L   +    +       +      L+ + L   +  +I 
Sbjct: 177 ESNQDQRYDRNFLRQQLLPTVL-RRWPHFAEASARSAALCGEQEQLLDELLAEPLSELIQ 235

Query: 252 ISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVS 303
                    +L +       LLR   A  G    +P   ++ R+   ++  +   +  + 
Sbjct: 236 PDGSLCFTPLLTMSEVKGNALLRRWLAAQG--EKMPSREALRRIRQEIMLCREDAQPRLK 293

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           +G   I R    L+      +LP      +    W+   Q  +L  +L  +  +
Sbjct: 294 LGNHEIRRYRQQLY------HLPLSASLADCEIAWNDVEQPLHLPQNLGVLTAE 341


>gi|172087739|ref|YP_205328.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114]
 gi|171902329|gb|AAW86440.2| tRNA(Ile)-lysidine synthetase [Vibrio fischeri ES114]
          Length = 456

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/355 (23%), Positives = 137/355 (38%), Gaps = 33/355 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V   H++VA+SGG DSM LL        ++   +++  A+ V+H L   A D     +  
Sbjct: 29  VKKPHLIVALSGGVDSMVLLRLAGMYAKEK---QLECMAVHVNHGLSLHANDWEVSCASY 85

Query: 77  CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C  L I   +        PQ  L   AR+ARY  + ++ ++   +L++T    DDQ+ET 
Sbjct: 86  CKELDIPLYIERVNLKVSPQESLEEVARKARYHALEKYMQSN--SLLLTGQHQDDQVETF 143

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++  +R       GLS M   I         RP L   R+ I  +  Q  ++W ED SN 
Sbjct: 144 FLALKRGSGP--AGLSSMPSIIPLKTGYK-CRPLLFTSRQHITEYAQQHQLTWVEDESNQ 200

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D RF+R  +R  +  +    L  +   F     +     A      + +    +     +
Sbjct: 201 DTRFDRNFLRHEITPV----LSQRWPSFASAVSRSAQLCAEQEALLVELLQPKLQLFQNE 256

Query: 256 -----ILNIDSTLLFY---LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304
                I  I+   L     LLR+   +    I LP    +  +       +     C+ +
Sbjct: 257 FQGLSIKQIEPESLASRNMLLRLWLKLF--AIPLPSQTQLHILWNEVAMAQQDANPCLEL 314

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYP-EETTVWDG------RYQFQNLSDSLI 352
           G V I R   +++     ++L         +  + D       R +F N   S I
Sbjct: 315 GIVQIRRYQGYIYCVPKYQDLSLWKKALEGKIALPDNLGELELRAKFSNHEKSSI 369


>gi|88606751|ref|YP_505718.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ]
 gi|88597814|gb|ABD43284.1| tRNA(Ile)-lysidine synthetase [Anaplasma phagocytophilum HZ]
          Length = 447

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 150/341 (43%), Gaps = 14/341 (4%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R +V  A   VAVSGG DSM L+  L ++    S      + ++V+H  R  A++EV +
Sbjct: 1   MRDIVPNAQYAVAVSGGVDSMTLMR-LVALFHKSSASVGSPTILTVNHGFRPEARNEVSF 59

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V    + L +   ++ W+N   +      AR  RY L+ +     N  +++TAHT +DQ 
Sbjct: 60  VHKQATMLGLECHMLHWENPIRKKS-QVVARNIRYQLLLQWCSAHNVKVLLTAHTKNDQA 118

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +R +R     G  L+G+ +  +   ++ I RP L   R +I+ + +Q    W EDP
Sbjct: 119 ETVLIRLERGSGIDG--LAGIRERSVIG-DVTIIRPLLDFTRREIQEYAIQHQQPWIEDP 175

Query: 193 SNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           SN+D ++ R   R F+ +     I +  L       Q     + + V   +   L     
Sbjct: 176 SNSDPKYRRTFYRNFINNCKHPEILISRLSSTALHMQRSLSCILHYVQNALDSCLEFTPF 235

Query: 248 SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305
             + I  D+  N+   +   L  +     G +   P +      +  ++S       ++ 
Sbjct: 236 GYVVIKHDVFRNLQDEIASRLFLLLIMTIGNKPLKPRFSKFSSALSKVRSTAGFASFTLH 295

Query: 306 RVVI-DRRANFLWITRAVRNL-PTLILYPEETTVWDGRYQF 344
             +I     + + + R V ++ P   L+ E   +WD R++ 
Sbjct: 296 GCMILKTCDSNIIVAREVSSIVPKTYLHGETRLLWDSRFEL 336


>gi|197334782|ref|YP_002156773.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11]
 gi|197316272|gb|ACH65719.1| tRNA(Ile)-lysidine synthase [Vibrio fischeri MJ11]
          Length = 456

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 129/321 (40%), Gaps = 26/321 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V   H++VA+SGG DSM LL        ++   +++  A+ V+H L + A D     +  
Sbjct: 29  VKKPHLIVALSGGVDSMVLLRLAGMYAKEK---QLECMAVHVNHGLSKHASDWEVSCASY 85

Query: 77  CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C  L I   +        PQ  L   AR+ARY ++ +H +    +L++T    DDQ+ET 
Sbjct: 86  CEELDIPLYIERVNLKVSPQESLEEVARKARYHVLEKHMRAN--SLLLTGQHQDDQVETF 143

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++  +R       GLS M   I         RP L   R+ I  +  Q  ++W ED SN 
Sbjct: 144 FLALKRGSGP--AGLSSMPSIIPLKTGYK-CRPLLFTSRQHITEYAQQHQLTWVEDESNQ 200

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D RF+R  +R  +  +    L  +   F     +     A      + +    +     +
Sbjct: 201 DTRFDRNFLRHEITPV----LSQRWPSFASAVSRSAQLCAEQEALLVELLQPKLQLFQNE 256

Query: 256 -----ILNIDSTLLFY---LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304
                I  I+   L     LLR+   +    I LP    +  +       +     C+ +
Sbjct: 257 FQGLSIKQIEPESLASRNMLLRLWLKLF--AIPLPSQTQLHILWNEVAMAQQDANPCLDL 314

Query: 305 GRVVIDRRANFLWITRAVRNL 325
           G V I R   +++     +++
Sbjct: 315 GIVQIRRYQGYIYCVPKYQDV 335


>gi|260775269|ref|ZP_05884166.1| tRNA(Ile)-lysidine synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608450|gb|EEX34615.1| tRNA(Ile)-lysidine synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 444

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 127/323 (39%), Gaps = 25/323 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +  +    +++A+SGG DS  LL  +     +     +   A+ V H L   A D     
Sbjct: 13  QHRLPDGKLVLALSGGLDSRVLLSLMARYCREHQQEGL---AVHVHHGLSSNADDWAEQC 69

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              CS   I  ++      K    +  +AREARY  +S++       L++T    DDQ E
Sbjct: 70  KQWCSEDGIPFNLERVTLEKSGKSIEESAREARYQALSKYVSKE--DLLLTGQHSDDQFE 127

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R    KG  LS M   + +   L + RP L   R D++++ +   + W ED S
Sbjct: 128 TFLLALKRGSGPKG--LSAMAQAMSFGEAL-LVRPLLAVSRSDVKAYAVAEQLQWVEDES 184

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSII 250
           N D RF+R  +R  V  +    +  +   F     +     A    L+ + LT  +  ++
Sbjct: 185 NQDTRFDRNFIRHQVAPV----ITRRWPHFSQAVQRSAELCAEQEQLLDQLLTERLVEVL 240

Query: 251 AISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302
                +      N+   +   LLR+   +   Q  +P    + +V       +      +
Sbjct: 241 HQDGSLWIEPLQNMTPLMRARLLRMW--LSHHQARMPSREQLNKVWQEVALSRQDANPAL 298

Query: 303 SIGRVVIDRRANFLWITRAVRNL 325
           SI    + R    L++    + L
Sbjct: 299 SISGGQVRRFEQRLYLVEQWQEL 321


>gi|212212130|ref|YP_002303066.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuG_Q212]
 gi|212010540|gb|ACJ17921.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuG_Q212]
          Length = 449

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 17/331 (5%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +  F+ +L   ++  +A SGG DS  L+ A+  +  +      +  A+ ++H L   A
Sbjct: 15  EKLIKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEH---PWQLRALHINHGLNPKA 71

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            D   +   +C+RL+I         S +P   + A AR+ARYA+  +         ++TA
Sbjct: 72  NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYAIFQQALSEN--ETLLTA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT +DQ ET  ++  R    KG+        +       + RP L   R+D++ +  + N
Sbjct: 130 HTENDQAETFLLQLLRGAGVKGLSAMPAKRKL---GKGELVRPLLAITRDDLKKYAEKNN 186

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           + W ED +N + RF R  +R  V  I       ++  + +  +   +    +  L    L
Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEVLPILRRRWPEVFAVISRSANHCAEAALLLDQLAESDL 246

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299
            +  +        +L +       +LR    + G Q  LP  + +E++   +L       
Sbjct: 247 QLIQKDSELEIPPLLQLTPERQRNVLRRWIYLHGFQ--LPQTKQLEQIRNDVLLAAHDAN 304

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330
              S   + I R    L+++ A+       L
Sbjct: 305 PVFSYHTIEIRRHHGKLYLSNALSAHNATPL 335


>gi|238784898|ref|ZP_04628898.1| tRNA(Ile)-lysidine synthase [Yersinia bercovieri ATCC 43970]
 gi|238714215|gb|EEQ06227.1| tRNA(Ile)-lysidine synthase [Yersinia bercovieri ATCC 43970]
          Length = 451

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/318 (24%), Positives = 133/318 (41%), Gaps = 15/318 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    + LV  SGG DS  LL  L  +  D+   ++K  AI + H L   A   V++  
Sbjct: 18  QLGGQRNFLVGFSGGLDSSVLLHLLVCI-RDQLIPELKVRAIHIHHGLNPRADGWVKHCQ 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C R +I   VV         G+ AAAR ARY   S H       +++TA   DDQ ET
Sbjct: 77  QQCERWQIPLEVVRVSIDPRHNGIEAAARSARYQAFSSHLAA--DEVLLTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAARMPFAHS-QLLRPLLTLSRETLENYARIQQLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            DDRF+R  +R  V  + LH  +    +       +      L+ + L   ++ +     
Sbjct: 192 QDDRFDRNFLRLRVLPL-LHHRWPHFAQATARSAGLCAEQEQLLDELLAESVQQL-KNHH 249

Query: 255 DILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRV 307
             L+I+  LL    + +A     +      +P    ++R+ L     +      +++G  
Sbjct: 250 GALSIEGLLLASEAKRAAIVRRWLAERGALMPSQSQLQRLWLEVAMARQDAEPQLTLGAY 309

Query: 308 VIDRRANFLWITRAVRNL 325
            + R    L++  A++ +
Sbjct: 310 QVRRFRQHLYLVPALQEI 327


>gi|84516649|ref|ZP_01004008.1| PP-loop family protein [Loktanella vestfoldensis SKA53]
 gi|84509685|gb|EAQ06143.1| PP-loop family protein [Loktanella vestfoldensis SKA53]
          Length = 392

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 166/391 (42%), Gaps = 21/391 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F + L     + +AVSGG DS+ LL    ++         + S  SVDH LR  +  E  
Sbjct: 6   FAQLLQGGTPVGLAVSGGGDSIALLHLAAAIGG-------RISVASVDHGLRPESAAECG 58

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            V+D+C+   + H  + W     +  L   AR ARY L+++ A+      I   HT DDQ
Sbjct: 59  MVADICTSYGLPHQTLKWTGWDRRGNLQDQARRARYGLLADWARAAGVANIALGHTADDQ 118

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ M   R     G  L+GM   +  D  L   RP L+  R  +R++L+     WC+D
Sbjct: 119 AETIVMALARGAGVGG--LAGMAAVMSRD-GLHYHRPLLQVTRVALRAYLVATGRVWCDD 175

Query: 192 PSNTDDRFERVRVRRF---VRDIDL--HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           PSN D  +ER+R+R+    + ++ L    L    +        ++   A L    + +  
Sbjct: 176 PSNDDPAYERIRIRQAADTLAELGLTSQTLGQVAQHMATATEALDRGTADLAAAVM-MPQ 234

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
              + I   + ++       L+  +      +I+ P     +R+M  L  G+   V++G 
Sbjct: 235 SGDVLIMLALRDLSREQARRLVLAAMERVHRRITPPRKDEQQRLMHALLQGQG--VTLGG 292

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366
            ++      L ++R  + +  ++     T +WD R++        +Q+            
Sbjct: 293 CLMTFDGPVLRVSREPQAVAQIVTP--TTALWDARWRLSGPHAPDLQLRALGAGIELCCD 350

Query: 367 GIPPIIAQRALSSMPSKEGGKPLL-APFSRF 396
                + +R+L + P+    + L+ AP + F
Sbjct: 351 WRRSGLPRRSLQATPAVWRDQTLVSAPLAGF 381


>gi|89053469|ref|YP_508920.1| tRNA(Ile)-lysidine synthetase-like [Jannaschia sp. CCS1]
 gi|88863018|gb|ABD53895.1| tRNA(Ile)-lysidine synthetase-like protein [Jannaschia sp. CCS1]
          Length = 422

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 162/389 (41%), Gaps = 30/389 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +P+ I +AVSGG DSM +L   H        G      ++VDH LR  ++ E   V+  C
Sbjct: 21  FPSDIALAVSGGGDSMAMLTLAHGWARVYGVG---LHVVTVDHGLRSASRQEAEMVAKEC 77

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L   H+ + W+    Q  L  AAR AR +LI   A       ++ AHT DDQ ET+ M
Sbjct: 78  AVLGHPHTTLKWQ-WDNQGNLQDAARRARLSLIG--AWRGQIAHVLFAHTRDDQAETMLM 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R  R     G  LS M +T   D++ W + RP L   R D+R +     + + +DPSN D
Sbjct: 135 RLLRGSGVDG--LSAMAET--RDMDGWQVIRPLLSETRADLRHYADVLRVPYVDDPSNED 190

Query: 197 DRFERVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT------VHMRS 248
           + F+RVR+R  ++   +D  AL     +    R  +      +    +T      +    
Sbjct: 191 ETFDRVRLRGTIKALGMDTRALANTAARMGRARTALEARAVDVARACVTEDRWEWMPTGD 250

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
           ++        ++      +L  +          P    +E ++    SG  G +   R  
Sbjct: 251 LLIDRDRFAEVEPDTQLRVLAGALQWVTTADYRPRAAPLEDLLDRALSGGGGTLHGARTT 310

Query: 309 IDRRANFLWITRAVRNLPTLILYPE-ETTVWDGRYQFQNLSDSLIQ----IGPQSYRKA- 362
           I      + ++R    +    +    E  +WD R+Q  +      +    +GP  +++A 
Sbjct: 311 IR--GAHIRVSREFDAIEGTEVALGSEAVIWDTRWQVFSTDVPSGRRVRALGPDGWQQAT 368

Query: 363 DVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
           D P   PP     A   +P+   G  L+A
Sbjct: 369 DKPDHPPPH---DAAICLPALFEGDRLVA 394


>gi|239832779|ref|ZP_04681108.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum intermedium LMG 3301]
 gi|239825046|gb|EEQ96614.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum intermedium LMG 3301]
          Length = 463

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 190/452 (42%), Gaps = 38/452 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M LSP    + F       A  ++ AVSGGSDS+GLL  L   ++       +  A +VD
Sbjct: 1   MGLSPSNIFKLFEPFGFEQARAVIAAVSGGSDSLGLLFLLRDYMAMLKDPP-RLIAATVD 59

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H LR  ++DE   V  +CS   I H +++W  +KP +GL AAAR ARY L+S+ A+   A
Sbjct: 60  HQLRAESRDEAENVGRLCSHYGIEHRILTWDEAKPTSGLAAAARTARYRLLSQAAQEAGA 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRR 174
             I+T HT DDQ+ET  MR +R    +  GL+ M    L      +      RP L   R
Sbjct: 120 AFIVTGHTQDDQIETFLMRRERSAHAEARGLAAMSSRSLLGGFGRVGSVELDRPLLSISR 179

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNN- 232
           + +R  L  R I W +DPSN +  +ER RVR  V    D  A+  ++ +    R + N  
Sbjct: 180 QVLREELRGRGIGWIDDPSNANTDYERPRVRLGVAAKADRQAVLDQIAEAGAARERDNAV 239

Query: 233 -AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPGYRSMERV 290
              A+  P  L +     + +   +          L   + AAI GG+  LPG     R+
Sbjct: 240 LIAALADPASLRIDANGALLVDPQLYAALPDNARRLFAGLLAAIAGGRRFLPGDSERSRI 299

Query: 291 MLFLK-SGKRGCVSIGRVVIDRRANF--LWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
              L        +++   +I+R A+       R  RNLP L L P +  VWDGR++F N 
Sbjct: 300 ERVLSGEDDNHRLTVFGALIERGADGSPHRFLREKRNLPKLHLEPGKPIVWDGRFRFSNE 359

Query: 348 SDSLIQIGPQSYRK------------------------ADVPSGIPPIIAQRALSSMPSK 383
                ++     ++                        A    G    +  R     P  
Sbjct: 360 GSIDFELAAPGRQELADFLKAQNIEIESRKREALLVSPALYRDGRLYALPFRREGDFPKD 419

Query: 384 EGGKPLLAPFSRFMTKFDLPVAYAFSISFGKV 415
              +   A F   +   D  +A A     G+V
Sbjct: 420 IHVERHFAIFDHVLPGHDFDLAMAVEARIGRV 451


>gi|29654800|ref|NP_820492.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 493]
 gi|154706200|ref|YP_001423893.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|164686109|ref|ZP_01946931.2| tRNA(Ile)-lysidine synthase [Coxiella burnetii 'MSU Goat Q177']
 gi|165919314|ref|ZP_02219400.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 334]
 gi|212219227|ref|YP_002306014.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuK_Q154]
 gi|61216625|sp|Q83BJ9|TILS_COXBU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29542068|gb|AAO91006.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii RSA 493]
 gi|154355486|gb|ABS76948.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii Dugway 5J108-111]
 gi|164601674|gb|EAX32419.2| tRNA(Ile)-lysidine synthase [Coxiella burnetii 'MSU Goat Q177']
 gi|165916974|gb|EDR35578.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 334]
 gi|212013489|gb|ACJ20869.1| tRNA(Ile)-lysidine synthetase [Coxiella burnetii CbuK_Q154]
          Length = 449

 Score =  242 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 17/331 (5%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +  F+ +L   ++  +A SGG DS  L+ A+  +  +      +  A+ ++H L   A
Sbjct: 15  EKLLKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEH---PWQLRALHINHGLNPKA 71

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            D   +   +C+RL+I         S +P   + A AR+ARYA+  +         ++TA
Sbjct: 72  NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYAIFQQALSEN--ETLLTA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT +DQ ET  ++  R    KG+        +       + RP L   R+D++ +  + N
Sbjct: 130 HTENDQAETFLLQLLRGAGVKGLSAMPAKRKL---GKGELVRPLLAITRDDLKKYAEKNN 186

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           + W ED +N + RF R  +R  V  I       ++  + +  +   +    +  L    L
Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEVLPILRRRWPEVFAVISRSANHCAEAALLLDQLAESDL 246

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299
            +  +        +L +       +LR    + G Q  LP  + +E++   +L       
Sbjct: 247 QLIQKDSELEILPLLQLTPERQRNVLRRWIYLHGFQ--LPQTKQLEQIRNDVLLAAHDAN 304

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330
              S   + I R    L+++ A+       L
Sbjct: 305 PVFSYHTIEIRRHHGKLYLSNALSAHNATPL 335


>gi|86146872|ref|ZP_01065191.1| Cell cycle protein MesJ [Vibrio sp. MED222]
 gi|85835324|gb|EAQ53463.1| Cell cycle protein MesJ [Vibrio sp. MED222]
          Length = 448

 Score =  242 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 82/349 (23%), Positives = 142/349 (40%), Gaps = 33/349 (9%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            F +S + P  ++VA SGG DS  LL              I+  A+ V H L + A    
Sbjct: 11  AFQQSDLKPRRLVVAFSGGVDSRVLLELAAKYAKSH---HIECCAVHVHHGLSKNADLWA 67

Query: 71  RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                 C    +  ++     +      +   AR+ARY  + +H       +++T    D
Sbjct: 68  EQCQTWCDASSVPLAIERVSLDINSGESVEKLARDARYDSLQKHLSF--GDVLITGQHID 125

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQLET  +  +R    KG  LS M   + +    +I RP L   R DI +      ++W 
Sbjct: 126 DQLETFLLALKRGSGPKG--LSSMAKVMSFGE-AFIVRPLLSVTRLDIEASAHDMGLTWV 182

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD---LRVKVNNAVAMLIPKYLTVHM 246
           ED SN D RF+R  +R  V       L  +   F++      ++      L+ + L  H+
Sbjct: 183 EDESNQDLRFDRNFIRHQVTPT----LTERWPSFRESVCRSAQLCAEQESLLDELLESHL 238

Query: 247 RSII--------AISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFL 294
           +  +        ++S D L+  S LL   L+R+  + C     +P  + ++ +       
Sbjct: 239 QQALGGCNSKSQSLSIDSLSQHSDLLRARLIRMWLSHCNQ--PMPSQKQLKLIWDEVACA 296

Query: 295 KSGKRGCVSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDG 340
           ++     + +  V I R  N L++   T+ + +  + IL  E   + DG
Sbjct: 297 QADANPKLVLNDVEIRRFNNQLYLVQDTKDLSSWKSEILIDENLLLPDG 345


>gi|295098677|emb|CBK87767.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 428

 Score =  242 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 92/412 (22%), Positives = 151/412 (36%), Gaps = 41/412 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV  SGG DS  LL  L  +  DR    ++  A+ + H L   A D V +   VCS 
Sbjct: 14  RQLLVGFSGGLDSTVLLHRLK-LWRDRE-PDVQLRAMHIHHGLSPHADDWVAHCEAVCSG 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   V          G+ A AR+ARYA  S   +      ++TA   DDQ ET  +  
Sbjct: 72  WAIPLIVERVTLEDEGLGIEAQARKARYAAFSGALQQ--GEALVTAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R       GLS M +   +     + RP L   R  + ++  Q ++ W ED SN DD +
Sbjct: 130 KRGSGP--AGLSAMPERADFAET-ELIRPLLGETRASLEAWAQQHHLCWIEDESNQDDSY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDIL 257
           +R  +R  V    L  L  +   F +   +     A        +    +  +  +   L
Sbjct: 187 DRNFLRLRV----LPLLSERWAHFSEAAARSAMLCAEQESLLDELLSEELDTLTTADGAL 242

Query: 258 NIDSTLLFYLLRVSAAICGGQIS----LPGYRSMERVM---LFLKSGKRGCVSIGRVVID 310
           NI    +   +R +A I          +P    + R+       +     C+ +    + 
Sbjct: 243 NIAPLKVMSPVRRAALIRRWLAYHRAVMPSRAMLNRIWEEVAQAREDAAPCIHLNGYDVR 302

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPP 370
           R    LW  ++V +L  ++L       W    +   L  +   +         +P     
Sbjct: 303 RYKGQLWWVKSVPSLADVVLD------WPSPEKALTLPMNAGVVALSHSGNVRLPEPDEN 356

Query: 371 IIAQ-RALSSMP--SKEGGKPL--------LAPFSRFMTKF----DLPVAYA 407
           +  + RA   +    + GG+ L        + P+ R  T      D  +A A
Sbjct: 357 VTIRFRASGMLHIVGRNGGRKLKKIWQEQNVPPWRRDTTPLLFYGDTLIAAA 408


>gi|260429327|ref|ZP_05783304.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45]
 gi|260419950|gb|EEX13203.1| tRNA(Ile)-lysidine synthase [Citreicella sp. SE45]
          Length = 445

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 96/405 (23%), Positives = 156/405 (38%), Gaps = 42/405 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +P  I +AVSGG DSM +L   H+         ++   ++VDH LR  A  E   V D C
Sbjct: 21  FPLDIGLAVSGGGDSMAMLTLAHNWT---HRWGVRLWVVTVDHGLRPEAAAEATLVRDTC 77

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L   H+ + W +   Q  LM AAR  R +LI           ++ AHT DD  ET  M
Sbjct: 78  AELGWPHTTLRW-HWDGQGNLMDAARRGRLSLIGRW--RGGLPAVLFAHTRDDVAETFLM 134

Query: 138 RSQRDYAEKGMGLS---------------------GMCDTILYDLNLWISRPFLRCRRED 176
           R  R     G+                        G     +      + RP L   RE+
Sbjct: 135 RLARGSGVDGLSAMAPVREIRDAAPPAPLTEDECCGDRPPGIATDGFRVVRPCLDMGREE 194

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVN 231
           +R +L      W +DPSN D  ++R RVR+ + ++    L          +    R  + 
Sbjct: 195 LRHYLRVLKGRWVDDPSNEDPHYDRARVRKLLAELAPQGLGTETLAATAGRMSRAREALR 254

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                         +   + + +D    +++     LL  +          P    +E +
Sbjct: 255 ARAVAGWHSCGREGVAGDLILDRDAFAALEADTRMRLLAAALQYVSSAEYRPRAAQLEAL 314

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS 350
           +  L +G  G  ++    +      + I R    +  L     E  +WDGR++  + + S
Sbjct: 315 LDRLDAGAGG--TLHGAELRCDRAEIRIFREYAAVAGLRRAVTEGGLWDGRWRVSHPTPS 372

Query: 351 LIQI---GPQSYRK-ADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
            ++I   G   +R+ A+  +G PP    RAL   P+   G  L+A
Sbjct: 373 GLEIRALGEDGWRQSAERRAGGPPHAVARAL---PAIWDGDRLVA 414


>gi|326937855|gb|AEA13751.1| cell cycle protein MesJ [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 430

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L I    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++  
Sbjct: 175 TKEEIVDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|218895199|ref|YP_002443610.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
 gi|218545400|gb|ACK97794.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus G9842]
          Length = 476

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L I    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++  
Sbjct: 175 TKEEIVDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|218710301|ref|YP_002417922.1| tRNA(Ile)-lysidine synthase [Vibrio splendidus LGP32]
 gi|254764823|sp|B7VIQ1|TILS_VIBSL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|218323320|emb|CAV19497.1| tRNA(Ile)-lysidine synthase [Vibrio splendidus LGP32]
          Length = 456

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 83/354 (23%), Positives = 144/354 (40%), Gaps = 41/354 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +S + P+ ++VA SGG DS  LL              I+  A+ V H L + A       
Sbjct: 14  QSALKPSRLIVAFSGGVDSRVLLELAAQYAQTHG---IECCAVHVHHGLSKNADLWAEQC 70

Query: 74  SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              C  L ++ +V     +      +   AR+ARY    +H +     +++T    DDQL
Sbjct: 71  QTWCDALSVSLAVERVSLDINCGESVEKLARDARYQAFQQHIRQ--GDVLVTGQHIDDQL 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M   + +    +I RP L   R DI +      ++W ED 
Sbjct: 129 ETFLLALKRGSGPKG--LSSMAKVMSFGE-AFIVRPLLSVTRLDIEASAHDMGLTWVEDE 185

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD---LRVKVNNAVAMLIPKYLTVHMRSI 249
           SN D RF+R  +R  V       L  +   F++      ++      L+ + L  H++  
Sbjct: 186 SNQDLRFDRNFIRHQVTPT----LTERWPSFRESVCRSAQLCAEQESLLDELLESHLQQA 241

Query: 250 I----------------AISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM- 291
           +                ++S D L+  S LL   L+R+  + C     +P  + ++ +  
Sbjct: 242 LGGCNSKSNSKSNSKSQSLSIDSLSQHSDLLRARLIRMWLSHCNQ--PMPSQKQLKLIWD 299

Query: 292 --LFLKSGKRGCVSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDG 340
                ++     + +  V I R  N L++   T+ + +  + IL  E   + DG
Sbjct: 300 EVACAQADANPKLVLNDVEIRRFNNQLYLVQDTKDLSSWKSEILIDENLLLPDG 353


>gi|259417352|ref|ZP_05741271.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B]
 gi|259346258|gb|EEW58072.1| tRNA(Ile)-lysidine synthase [Silicibacter sp. TrichCH4B]
          Length = 426

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 170/406 (41%), Gaps = 23/406 (5%)

Query: 1   MFLSPIESVRFF---VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M L+P E         R  V P+ + +AVSGGSDS+ L+    ++           +  +
Sbjct: 1   MLLTPTEEALIAEIRARIGVLPSKLGIAVSGGSDSIALMHLFAALARKNGA---DLAIAT 57

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           VDH LR  +  E R V+   + L ++H +++W++      L A AR ARY L+ E A   
Sbjct: 58  VDHGLRTDSLIEARGVAQQAADLGLSHDILTWQHPAQSGNLQAEARAARYRLLGEWATAR 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   HT DDQ ET  MR +R       GLSGM      D  + I RP L  RR D+
Sbjct: 118 EIEAVAVGHTADDQAETFLMRLRRASGV--AGLSGMASRHHRD-GIEILRPLLGIRRSDL 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNN 232
           R++L  R I+W +DPSN D +FERVRVR  ++      + + AL       +     +  
Sbjct: 175 RAYLTAREINWVDDPSNLDMKFERVRVRDALKALKPLGLTVDALTAVADNMRMADDALEA 234

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
           A+         V +  ++        +D  L   +L  + A   G    P    +   + 
Sbjct: 235 AMRAAAATLGQVRLGMVVLDHTGFTTLDDELARRMLLSAIAYVNGAEYPPRRAPVLDALQ 294

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL----YPEETTVWDGRYQFQNLS 348
            LK G+   +   ++VI    + +WI R    +  + +       +   WD  +      
Sbjct: 295 ALKDGRGVTLQGCQIVIR--GSQIWIGREYAAVRQVGVSYLPSTSKHISWDAAWVISTPQ 352

Query: 349 DSLIQIGPQSYRK---ADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
           D   Q+  ++  +   A +         +  L S+PS      L+A
Sbjct: 353 DWTQQVEIRALGEDGLALIDDWRQYEAPRELLKSLPSVWQDANLIA 398


>gi|294496939|ref|YP_003560639.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551]
 gi|294346876|gb|ADE67205.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium QM B1551]
          Length = 458

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 137/339 (40%), Gaps = 23/339 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
           L   + ++V +SGG DS+ LL  L S+   +S   +   A  VDH  R   +K ++ YV 
Sbjct: 15  LSAGSTVVVGISGGPDSLALLHFLWSLKEQKS---LTIIAAHVDHMFRGKESKQDMEYVQ 71

Query: 75  DVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + C +L I        V+    + +     AARE RY   +   K   A L+   H  DD
Sbjct: 72  NYCKQLNIKCEAKQIDVTAYQKERKLSSQVAARECRYTFFNHVMKKHKANLLALGHHGDD 131

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q+ET+ MR  R     G   +GM     Y  + +I RPFL   +E+I  +     ++   
Sbjct: 132 QIETMLMRMVRGSTMNGY--AGMQPKRPYA-DGFIIRPFLAVTKEEINRYCKLHGLTPRI 188

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP-------KYLT 243
           DPSN  D + R R R +V            +KFQ     ++   A L         K + 
Sbjct: 189 DPSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYLEELTTGVMNKVMR 248

Query: 244 VHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGK-RG 300
             +++ I I +D  L I   L    +++       +I        ++ ++ F +S K  G
Sbjct: 249 KKLQNEILIDRDCFLRIRKPLQRRGIQLILNYLYKEIPPTLSSAHIDMLVGFCESEKPSG 308

Query: 301 CVSI--GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
            +    G  +I    + L+        P   + P    V
Sbjct: 309 TLDFPNGLRIIRSYNDCLFTFNEGNIEPYEFIVPIPGVV 347


>gi|251790727|ref|YP_003005448.1| tRNA(Ile)-lysidine synthetase [Dickeya zeae Ech1591]
 gi|247539348|gb|ACT07969.1| tRNA(Ile)-lysidine synthetase [Dickeya zeae Ech1591]
          Length = 442

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 133/329 (40%), Gaps = 17/329 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H LVA SGG DS  LL  +  +   R+   +   A+ V H L   A     +  
Sbjct: 18  QLATGGHYLVAYSGGLDSTVLLHLMTRLRLPRA---LSLRAVYVHHGLSVNADAWAEHCR 74

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C    +   VV  +      G+ AAAR ARY ++ +H       +++TA   DDQ ET
Sbjct: 75  TQCLNWLVPFDVVPVQVDARDGGIEAAARAARYKVLHQHVCE--GEVLLTAQHQDDQSET 132

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R     G+       T+     + + RP L   RE +  +     +SW ED SN
Sbjct: 133 FLLALKRGSGPAGLASMAAAATL---NGMVLQRPLLSISREQLEIYARLHQLSWVEDDSN 189

Query: 195 TDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            D+R++R  +RR V  +           + +  +L  +    +  L+ + L     +  A
Sbjct: 190 ADERYDRNFLRRQVLPVLKQRWPHFPSTVARSAELCAEQEQLLDELLAESLAALRNADGA 249

Query: 252 ISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRV 307
           +S   L  + +T  F LLR   A  G    +P    + R+       +      + +G  
Sbjct: 250 LSVAALMPMSATRRFALLRRWLAEQG--ARMPSREQLVRLWQEVALSRDDANPRLQLGSW 307

Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETT 336
            I R  ++L++   ++ +   +L  + T 
Sbjct: 308 QIRRFRHYLYLLPTMQPVTDYVLSWQPTV 336


>gi|295702306|ref|YP_003595381.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319]
 gi|294799965|gb|ADF37031.1| tRNA(Ile)-lysidine synthetase [Bacillus megaterium DSM 319]
          Length = 458

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 137/339 (40%), Gaps = 23/339 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L   + ++V +SGG DS+ LL  L S+   +S   +   A  VDH  R E ++ ++ YV 
Sbjct: 15  LSAGSTVVVGISGGPDSLALLHFLWSLKEQKS---LTIIAAHVDHMFRGEESQQDMEYVQ 71

Query: 75  DVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + C +L I        V+    + +     AARE RY   +   K   A  +   H  DD
Sbjct: 72  NYCKQLNIKCEAKQIDVTAYQKERKLSSQVAARECRYTFFTHVMKKHKANFLALGHHGDD 131

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q+ET+ MR  R     G   +GM     Y  + +I RPFL   +E+I  +     ++   
Sbjct: 132 QIETMLMRMVRGSTMNGY--AGMQPKRPYA-DGFIIRPFLAVTKEEINRYCKLHGLTPRI 188

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP-------KYLT 243
           DPSN  D + R R R +V            +KFQ     ++   A L         K + 
Sbjct: 189 DPSNEKDSYTRNRFRHYVLPFLKQENAAVHEKFQQFSENLHEDQAYLEELTTDVMNKVMR 248

Query: 244 VHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGK-RG 300
             +++ I I +D  L I   L    +++       +I        ++ ++ F +S K  G
Sbjct: 249 KKLQNEILIDRDCFLRIRKPLQRRGIQLILNYLYKEIPPTLSSAHVDMLVGFCESEKPSG 308

Query: 301 CVSI--GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
            +    G  +I    + L+        P   + P    V
Sbjct: 309 TLDFPNGLRIIRSYNDCLFTFNEGNIEPYEFIVPIPGVV 347


>gi|228937366|ref|ZP_04100013.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970252|ref|ZP_04130912.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976822|ref|ZP_04137235.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
 gi|228782918|gb|EEM31083.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis Bt407]
 gi|228789487|gb|EEM37406.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822324|gb|EEM68305.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 480

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L I    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|75761780|ref|ZP_00741716.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228898817|ref|ZP_04063100.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
 gi|228905860|ref|ZP_04069758.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
 gi|228963164|ref|ZP_04124334.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|74490730|gb|EAO54010.1| tRNA(Ile)-lysidine synthetase TilS [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228796549|gb|EEM43987.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228853800|gb|EEM98559.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 200]
 gi|228860842|gb|EEN05219.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis IBL 4222]
          Length = 480

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 114/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L I    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVDYCNKLNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|254440828|ref|ZP_05054321.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307]
 gi|198250906|gb|EDY75221.1| hypothetical protein OA307_243 [Octadecabacter antarcticus 307]
          Length = 430

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 97/404 (24%), Positives = 166/404 (41%), Gaps = 22/404 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I VAVSGG DSM LL          +   +   A++VDH LR  A DE   V+  C 
Sbjct: 30  PKKIGVAVSGGGDSMALLHMCIWWA---NLVGVTVEAVTVDHGLRAEAADEAAVVAAFCK 86

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              ++HSV++W  +  +  + AAAREARYAL++  AK+     +M  HT DD  ET  MR
Sbjct: 87  DQGVSHSVLNWDGALAEGNVQAAAREARYALMAGWAKSRGIAHMMLGHTADDIAETFLMR 146

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G+      D       +  +RP     R  +R++L + ++ W EDPSN D  
Sbjct: 147 LARTSGVDGLAAM---DARFDRDGVKWARPLWEQPRAQLRNYLRRHDVGWVEDPSNEDLS 203

Query: 199 FERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
             R + R+ +       ID+  L          R  +    A    + +T     +I  +
Sbjct: 204 QTRPKARKILNALAPLGIDVGTLKSTAAFLSSARSALQCWAADEARRVVTFEHGDVIIPT 263

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV-MLFLKSGKRGCVSIGRVVIDRR 312
           +    + + +   L   +     G+   P   ++  + +  LK  +    ++    + + 
Sbjct: 264 RSCPPVHTEIERRLQLAAIGYINGEGYPPRKMALNYLDVALLKQDRH---TVAGCFVTKV 320

Query: 313 ANFLWITRAVRNLPTLILYPEETT--VWDGRYQFQNLS--DSLIQIGPQSYRK--ADVPS 366
              L  +R +  +   I++       +WDGR+        D    +  ++      DVP 
Sbjct: 321 DGGLRYSRELNAVEGPIVWSNRNVAKIWDGRWSLSEDQNHDRAGDLTIRALGDTMKDVPD 380

Query: 367 GIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFS 409
                + + +L + P+   G+ L+ AP +     F   +   F+
Sbjct: 381 WCESGLPRASLMASPAVFDGETLIAAPVAGLQNGFSARIVADFA 424


>gi|161830915|ref|YP_001597351.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 331]
 gi|161762782|gb|ABX78424.1| tRNA(Ile)-lysidine synthase [Coxiella burnetii RSA 331]
          Length = 449

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 17/331 (5%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +  F+ +L   ++  +A SGG DS  L+ A+  +  +      +  A+ ++H L   A
Sbjct: 15  EKLLKFITTLTSNSNFCIAYSGGIDSHVLVHAMSHLCQEH---PWQLRALHINHGLNPKA 71

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            D   +   +C+RL+I         S +P   + A AR+ARYA+  +         ++TA
Sbjct: 72  NDWENHCQQICNRLKIPFQSERVTLSLQPGDSIEAVARKARYAIFQQALSEN--ETLLTA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT +DQ ET  ++  R    KG+        +       + RP L   R+D++ +  + N
Sbjct: 130 HTENDQAETFLLQLLRGAGVKGLSAMPAKRKL---GKGELVRPLLAITRDDLKKYAEKSN 186

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           + W ED +N + RF R  +R  V  I       ++  + +  +   +    +  L    L
Sbjct: 187 LRWVEDDTNLELRFNRNYLRHEVLPILRRRWPEVFAVISRSANHCAEAALLLDQLAESDL 246

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299
            +  +        +L +       +LR    + G Q  LP  + +E++   +L       
Sbjct: 247 QLIQKDSELEILPLLQLTPERQRNVLRRWIYLHGFQ--LPQTKQLEQIRNDVLLAAHDAN 304

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLIL 330
              S   + I R    L+++ A+       L
Sbjct: 305 PVFSYHTIEIRRHHGKLYLSNALSAHNATPL 335


>gi|15602154|ref|NP_245226.1| hypothetical protein PM0289 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|61216731|sp|Q9CNY2|TILS_PASMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|12720522|gb|AAK02373.1| MesJ [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 431

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 139/344 (40%), Gaps = 30/344 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M L+  ++    +  L    H  L+  SGG DS  LL+    +   +    +   AI + 
Sbjct: 1   MLLTQFQAE---IAQLPPTQHQFLIGFSGGLDSTALLLLFAKLREKQ--PHLMLRAIHIH 55

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H L   A   V +   +C ++ I   V   K  + + G+ A AREARY  I +H   +  
Sbjct: 56  HGLSANADAWVTHCQQICQQVAIPLIVEQVKIDQHK-GIEAGAREARYQAIRQHL--LPN 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            +  TAH   DQ ET ++  +R     G+G      T+     L I RP L   R+ +  
Sbjct: 113 EMFATAHHQQDQTETFFLALKRGSGLAGLGAMQRKSTL---YCLPICRPLLTFTRQMLLD 169

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AM 236
           ++ Q    W ED SNTD R+ER  +R  V    L  L  +   F +   +          
Sbjct: 170 YVKQAGCPWVEDESNTDSRYERNFLRHEV----LPRLRQRWPHFDNAVQRSAQHCFEQQQ 225

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTL------LFYLLRVSAAICGGQISLPGYRSMERV 290
           L+ + L          ++    +             LLR+  A CG  +S+P    + ++
Sbjct: 226 LLNELLHAEFAQHFDKTERTFQLRDFATRSQLKQNALLRLWLAQCG--LSMPSKVQLTQL 283

Query: 291 M---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY 331
           +   +  KS  +    +G   + R  + L++T    +L +L L 
Sbjct: 284 IQDVILAKSDSQPQFQLGEYCVRRYQDTLYLTPHFADLSSLRLP 327


>gi|330001721|ref|ZP_08304094.1| tRNA(Ile)-lysidine synthetase [Klebsiella sp. MS 92-3]
 gi|328537568|gb|EGF63790.1| tRNA(Ile)-lysidine synthetase [Klebsiella sp. MS 92-3]
          Length = 349

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 129/319 (40%), Gaps = 24/319 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +L     +LVA SGG DS  LL  L  +        +   A+ V H L   A D V +
Sbjct: 10  AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSVHADDWVAH 67

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C + ++   V     ++   G+ A AR ARY    +        +++TA   DDQ 
Sbjct: 68  CRQICQQWQVPLGVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEVLVTAQHQDDQC 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +  +R       GLS M  + ++  +  + RP L   RE +R + L   +SW ED 
Sbjct: 126 ETLLLALKRGSGP--TGLSAMAPSSVFAGS-RLLRPLLNETRESLRQWALAHQLSWIEDE 182

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249
           SN DD ++R  +R  V    +  L  +   F +   +  +  A    L+ + L   + S+
Sbjct: 183 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 238

Query: 250 IAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
           +A         +  +       LLR   A  G Q  +P     ER+       +     C
Sbjct: 239 VAEDGSLAIAPLATMSPPRRAALLRRWLA--GQQAPMPAREVPERLWHEVALAREDASPC 296

Query: 302 VSIGRVVIDRRANFLWITR 320
           + +G   + R    L+  +
Sbjct: 297 LRLGEFTVRRFQQRLYWVK 315


>gi|261253711|ref|ZP_05946284.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891]
 gi|260937102|gb|EEX93091.1| tRNA(Ile)-lysidine synthetase [Vibrio orientalis CIP 102891]
          Length = 435

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 150/378 (39%), Gaps = 25/378 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       I++ +SGG DS  +L  L          ++   A+ V H L + A       
Sbjct: 13  QYYQPNTRIVLGLSGGLDSRVMLELLAQYAQQ---YRVDCLAVHVHHGLSDNADQWAEQC 69

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C  L +   V           +  +AREARY  + ++  +    L++T    DDQLE
Sbjct: 70  QHWCQSLNVQLVVEKVSLDIEGRSIEESAREARYNALRKYLSS--GDLLLTGQHADDQLE 127

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R    KG  LS M   + +  +  I RP L   R++I  F    ++ W ED S
Sbjct: 128 TFLLALKRGSGPKG--LSSMAAVMPFA-SAQIVRPLLSVTRQEIEEFAQSLDLEWVEDES 184

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N D RFER  +R  +          ++  +++  +L  +    +  L+ + L+  + S  
Sbjct: 185 NQDQRFERNFIRHNLTPNMRERWPHIHQSVRRSAELCAEQEQLLDELMAEKLSAALHSDS 244

Query: 251 AIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGR 306
           ++    +  +       LLR+     G  + +P    ++++       +      +++  
Sbjct: 245 SLEIATLAEMSELARTRLLRMWLGSLG--LRMPSRIQLDKLWQEVAQAQQDANPQLTLAD 302

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVW---DGRYQFQNLSDSLIQIGPQSYRKAD 363
             I R A+ L++ +A ++L       +   V    D   Q   +S    ++  ++  +A 
Sbjct: 303 GQIRRFAHKLYVVQAWQSLEQWQCSLQLEQVCELPDELGQLALVSSPNGKLSLKALAQAP 362

Query: 364 V-----PSGIPPIIAQRA 376
           +     P G+    A+R 
Sbjct: 363 LQVIFNPEGLSAHPAERG 380


>gi|206972582|ref|ZP_03233525.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
 gi|206732484|gb|EDZ49663.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH1134]
          Length = 476

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  ++K     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++R+V  +C  L I    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++  
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|304393350|ref|ZP_07375278.1| tRNA(Ile)-lysidine synthase [Ahrensia sp. R2A130]
 gi|303294357|gb|EFL88729.1| tRNA(Ile)-lysidine synthase [Ahrensia sp. R2A130]
          Length = 344

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 104/336 (30%), Positives = 152/336 (45%), Gaps = 12/336 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +LVA+SGGSDS  LL  LH     R   K    A +VDH LR  A +E   V  VC +L
Sbjct: 7   PVLVAISGGSDSSALLHRLH-----REIAKGNLFAATVDHGLRPEAAEEALQVEAVCQKL 61

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +AH+ + W   K      A+AR ARY L+  HA+++ A  I   HT DDQ ETV+MR+ 
Sbjct: 62  DVAHATLRWSGGKKTA---ASARAARYDLLVAHAQSLGAATIALGHTMDDQAETVFMRAM 118

Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R        GL+GM     + L + + RP L  RR  +R  L    ++W EDP+N D   
Sbjct: 119 RLRPTSNTRGLAGMTA-CTHHLGVTLWRPLLSTRRTALREDLSAAGLTWIEDPTNQDTST 177

Query: 200 ERVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           ERVRVR  +      +H L          R  +    A  +  Y+       + I  +I 
Sbjct: 178 ERVRVRNQLEAHSSTVHHLARFAAICAQSRSWLAQETATAMRNYVRWRNADNVWIISEIP 237

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
            +   +L  +L V     GGQ   P    +  V   ++  K    S+GR V+    + + 
Sbjct: 238 RLQKLVLREVLSVLIMAAGGQPYRPALAKLYPVADAVERNKNLRYSVGRSVVQVLGDTIM 297

Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
           ++R           P   +  +G Y+F++ +D  I 
Sbjct: 298 VSREGLRRNEKPSKPTTESASNGLYRFRSSADDPIA 333


>gi|327392817|dbj|BAK10239.1| tRNA(Ile)-lysidine synthase TilS [Pantoea ananatis AJ13355]
          Length = 435

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 132/357 (36%), Gaps = 30/357 (8%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F   L     ++VA SGG DS  LL  L +    R   + +  A+ V H L   A     
Sbjct: 4   FDALLKENDALVVAFSGGLDSTVLLHQLRAWQQAR--PRSRLRALHVHHGLSPNADSWAA 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +   +C R +I   V+  + +    G+ AAAR+ RY  + +         ++TA   DDQ
Sbjct: 62  HCLCLCERWQIPCEVLRVQVTDQGQGIEAAARQVRYQALGQALCA--DEKLLTAQHLDDQ 119

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ +  +R                       + RP L   R  +  +     + W ED
Sbjct: 120 CETLLLALKRGSGPA---GLAAMPAAATFAGHALLRPLLNHSRLSLEQYAKAHQLVWVED 176

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRS 248
            SN D R++R  +R+ +    L  L  +   F +   +   +      L+ + L   +  
Sbjct: 177 ESNQDQRYDRNFLRQQL----LPTLLRRWPHFAEASARSAALCGEQEQLLDELLAEPLSE 232

Query: 249 IIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRG 300
           +I          +L +       LLR   A  G    +P   ++ R+   ++  +   + 
Sbjct: 233 LIQPDGSLCFTPLLTMSEVKGNALLRRWLAAQG--EKMPSREALRRIRQEIMLCREDAQP 290

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
            + +G   I R    L+      +LP      +    W+   Q  +L  +L  +  +
Sbjct: 291 RLKLGNHEIRRYRQQLY------HLPLSASLADCEIAWNDVEQPLHLPQNLGVLTAE 341


>gi|90580988|ref|ZP_01236789.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14]
 gi|90437866|gb|EAS63056.1| hypothetical cell cycle protein MesJ [Vibrio angustum S14]
          Length = 438

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 120/315 (38%), Gaps = 13/315 (4%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            R  +  L      ++A SGG DS  LL  +   ++     +    A+ V H L   A  
Sbjct: 12  CRQLLAHLPASKRFVLAFSGGLDSRVLLDLMARFITQN--PEYSCHAVYVHHGLSSNADI 69

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                        I+  V   K  +  +  L  AAREARY ++++H       +++TA  
Sbjct: 70  WADKCVVWAKSAGISCDVERVKVLTGNRISLEQAAREARYNILAQHVNM--GDMLLTAQH 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ+ET  +  +R     G+    M   + +   + + RP L   R DI  + L+  +S
Sbjct: 128 SDDQIETFLLALKRGSGPAGLAAMPM--ILPFAKGMHL-RPLLNITRADIEQYGLEHKLS 184

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W ED SN D+R++R  +R  +    L   +  + K       +      L+ + L   + 
Sbjct: 185 WVEDESNQDERYDRNFIRHQITPR-LVERWPSIHKSVARSSALCGEQEALLAELLATQLA 243

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMERVM---LFLKSGKRGCVS 303
             I     +L          + +       Q + +P    +E++    +  K      + 
Sbjct: 244 QAIQADGSLLLASDVSQRVGMALIRQWLKKQSVLMPSLAQLEQIWFNVVQAKEDANPKLC 303

Query: 304 IGRVVIDRRANFLWI 318
              V + R    L++
Sbjct: 304 WANVEVRRYQKKLYL 318


>gi|296500896|ref|YP_003662596.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
 gi|296321948|gb|ADH04876.1| cell cycle protein MesJ [Bacillus thuringiensis BMB171]
          Length = 476

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V  +C  L I    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++  
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|218235253|ref|YP_002364913.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
 gi|218163210|gb|ACK63202.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus B4264]
          Length = 476

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V  +C  L I    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++  
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|30018334|ref|NP_829965.1| cell cycle protein MesJ [Bacillus cereus ATCC 14579]
 gi|61216614|sp|Q81J84|TILS_BACCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29893874|gb|AAP07166.1| Cell cycle protein MesJ [Bacillus cereus ATCC 14579]
          Length = 476

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V  +C  L I    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++  
Sbjct: 175 TKEEIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|467456|dbj|BAA05302.1| unknown [Bacillus subtilis]
          Length = 486

 Score =  239 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 133/334 (39%), Gaps = 27/334 (8%)

Query: 4   SPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             ++SV+ F+      +  A I+V VSGG DSM LL ALH++    +       A  VDH
Sbjct: 13  DIVKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NVIAAHVDH 68

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115
             R   +++++R+V   C   ++        V+    +      AAAR+ RY    E   
Sbjct: 69  RFRGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMS 128

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +  AH  DDQ+ET+ M+  +     G GL+GM     +     I RPFL   +E
Sbjct: 129 KHQADYLALAHHGDDQVETMLMKLAKGTL--GTGLAGMQPVRRFGTG-RIIRPFLTITKE 185

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  +  +S+  D SN  D + R R R+ V            K+FQ +   +     
Sbjct: 186 EILHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQ 245

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMER 289
            L         + I + S   + I+S+ L  L     R    +    +   +P   S   
Sbjct: 246 FLQSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHH 305

Query: 290 VMLFLKSGKRGC------VSIGRVVIDRRANFLW 317
           +  FL   + G          G  V+      L+
Sbjct: 306 IQQFLDWAENGGPSGVLDFPKGLKVVKSYQTCLF 339


>gi|163733524|ref|ZP_02140967.1| hypothetical protein RLO149_17773 [Roseobacter litoralis Och 149]
 gi|161393312|gb|EDQ17638.1| hypothetical protein RLO149_17773 [Roseobacter litoralis Och 149]
          Length = 414

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 99/408 (24%), Positives = 163/408 (39%), Gaps = 22/408 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VAVSGGSDSM LL+ L    +     +I  S  +VDH LR  A  E   V+  C+
Sbjct: 17  PKALGVAVSGGSDSMALLVLLRDYAAR---NRIALSCATVDHGLRPEAAAEAEGVAAYCA 73

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              + H  + W     +     AAR ARY L+++ A+    T I   HT DDQ ETV M 
Sbjct: 74  AHDVPHVTLKWTGWNGKGNTQNAARVARYRLLADWARGQGITDIALGHTQDDQAETVLMG 133

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G+           D  L   RP L   R  +R FL  R ++WCEDPSN DD+
Sbjct: 134 LARASGVDGLSAMAARRD---DRGLCWHRPLLAMSRAQLRGFLRGRGVAWCEDPSNEDDQ 190

Query: 199 FERVRVRRFVRDI-----DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           FER++ RR +  +     D  +L          R  + +     +   + +         
Sbjct: 191 FERIKARRALATLADLGVDRASLAQVAGNMAQARSALEHQTMQAVRDLVCLRGGGAAMPW 250

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
              L +   +   LL  +          P  +++   +   ++      ++    + R  
Sbjct: 251 SGFLGLPQEIARRLLVAAIDWIAAPSHAPRQKALAAALAAAETSDSA--TVAGCRLIRVG 308

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI----QIGPQSYRKADVPSGIP 369
           +  WI R  + +    +  + + +WD R+Q     ++ +     +G     +   P    
Sbjct: 309 DTFWIFREFQAVAH--IRSDASALWDDRWQIFGDQNAEVSEIRALGEDGLLQC--PEWRG 364

Query: 370 PIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAFSISFGKVF 416
             + +  L + P+   G  L+ AP ++  + +   V       F +VF
Sbjct: 365 TDLPRTLLLATPAVWQGDVLIAAPVAQSTSAWRAEVIKRPGCLFDRVF 412


>gi|217957639|ref|YP_002336181.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187]
 gi|217067016|gb|ACJ81266.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH187]
          Length = 476

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVDYCHKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|42779142|ref|NP_976389.1| hypothetical protein BCE_0061 [Bacillus cereus ATCC 10987]
 gi|61216566|sp|Q73FE5|TILS_BACC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|42735057|gb|AAS38997.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 476

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVDYCHKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|297538819|ref|YP_003674588.1| tRNA(Ile)-lysidine synthetase [Methylotenera sp. 301]
 gi|297258166|gb|ADI30011.1| tRNA(Ile)-lysidine synthetase [Methylotenera sp. 301]
          Length = 456

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 134/336 (39%), Gaps = 18/336 (5%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
            F  R L    H+L+A+SGG DS  LL  L +      F   +  A+ V H L   A   
Sbjct: 28  HFLSRYLKPNQHVLLALSGGLDSTVLLHLLAAAKQTIRF---ELHAMHVHHGLSPNADAW 84

Query: 70  VRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARY-ALISEHAKTINATLIMTAHT 127
             +    C  L +   VV  +     + G+ AAAR+ RY AL       I    ++TAH 
Sbjct: 85  ADFCMQQCQLLNVPIKVVRVQLDLNAKQGIEAAARQLRYEALFDFKVSGIAPDFVVTAHH 144

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ ++  R    KG+   G       D +  + RP L   R+ ++ +  Q NI 
Sbjct: 145 QDDQAETLLLQLFRGAGVKGLASMGCI-----DESRRLMRPLLDISRQTLQEYAEQNNIQ 199

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           WC D SN + ++ER  VR  V  +      ++   + +      + N+ +  L       
Sbjct: 200 WCNDESNDNTQYERNFVRHDVMPVLATRYPSVKSVLARTASHLAEANDLLDTLAKIDADK 259

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGC 301
            +++     QD+   D      LLR        Q+++P    +  ++  L   K+     
Sbjct: 260 LLQNNSLCLQDLTGFDLPRAKNLLRWWF--SQNQLAMPTSEHLNEIIQQLFNAKADANIN 317

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
           + +  + + R     ++       P  + +  E  +
Sbjct: 318 IQLQHLSLKRYQQRAYLCAERLAEPFDMTWNGEPYL 353


>gi|228950612|ref|ZP_04112747.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229077353|ref|ZP_04210023.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
 gi|228705950|gb|EEL58266.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-2]
 gi|228809087|gb|EEM55571.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 480

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  ++K     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++R+V  +C  L I    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|321313737|ref|YP_004206024.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5]
 gi|320020011|gb|ADV94997.1| tRNA(Ile)-lysidine synthetase [Bacillus subtilis BSn5]
          Length = 472

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 132/332 (39%), Gaps = 27/332 (8%)

Query: 6   IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + SV+ F+      +  A I+V VSGG DSM LL ALH++    +       A  VDH  
Sbjct: 1   MNSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NVIAAHVDHRF 56

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++++R+V   C   ++        V+    +      AAAR+ RY    E     
Sbjct: 57  RGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKH 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +  AH  DDQ+ET+ M+  +     G GL+GM     +     I RPFL   +E+I
Sbjct: 117 QADYLALAHHGDDQVETMLMKLAKGTL--GTGLAGMQPVRRFGTG-RIIRPFLPITKEEI 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +  +  +S+  D SN  D + R R R+ V            K+FQ +   +      L
Sbjct: 174 LHYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFL 233

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMERVM 291
                    + I + S   + I+S+ L  L     R    +    +   +P   S   + 
Sbjct: 234 QSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQ 293

Query: 292 LFLKSGKRGC------VSIGRVVIDRRANFLW 317
            FL   + G          G  V+      L+
Sbjct: 294 QFLDWAENGSPSGVLDFPKGLKVVKSYQTCLF 325


>gi|229113738|ref|ZP_04243174.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3]
 gi|228669735|gb|EEL25141.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-3]
          Length = 283

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKECSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVNYCNELNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|229067828|ref|ZP_04201146.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
 gi|229176664|ref|ZP_04304069.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
 gi|229188349|ref|ZP_04315398.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
 gi|228595148|gb|EEK52918.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 10876]
 gi|228606831|gb|EEK64247.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 172560W]
 gi|228715312|gb|EEL67170.1| tRNA(Ile)-lysidine synthase [Bacillus cereus F65185]
          Length = 480

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++R+V  +C  L I    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLRFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|229039969|ref|ZP_04189733.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
 gi|228727377|gb|EEL78570.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH676]
          Length = 480

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V  +C  L I    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|229125581|ref|ZP_04254614.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
 gi|228657898|gb|EEL13703.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-Cer4]
          Length = 480

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V  +C  L I    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|228956505|ref|ZP_04118302.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229107750|ref|ZP_04237387.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
 gi|229142870|ref|ZP_04271312.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
 gi|229148473|ref|ZP_04276730.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
 gi|228635015|gb|EEK91587.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1550]
 gi|228640582|gb|EEK96970.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST24]
 gi|228675723|gb|EEL30930.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock1-15]
 gi|228803195|gb|EEM50016.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 480

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V  +C  L I    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQMHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|228919014|ref|ZP_04082394.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840663|gb|EEM85924.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 480

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  ++K     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKNDSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V  +C  L I    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESYEDLQFVQGLCEELGIICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVDYCNKLNLMPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|209695834|ref|YP_002263764.1| tRNA(Ile)-lysidine synthase [Aliivibrio salmonicida LFI1238]
 gi|208009787|emb|CAQ80094.1| tRNA(Ile)-lysidine synthase [Aliivibrio salmonicida LFI1238]
          Length = 443

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 152/399 (38%), Gaps = 27/399 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             + ++VA SGG DS+ LL             ++   A+ V+H L E A +   +    C
Sbjct: 16  PKSELVVAFSGGVDSVVLLHLAAYYSK---LHQLPCVAVYVNHGLSEHAVEWEVFCQSYC 72

Query: 78  SRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             L I+  +     +  PQ  L   AREARY ++++H      +L++T    DDQ+ET +
Sbjct: 73  DSLGISLFIERVNLDIGPQQSLEEVAREARYDVLAKHINNH--SLLLTGQHQDDQVETFF 130

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R     G+    +    +        RP L   R DI ++     + W ED SN D
Sbjct: 131 LALKRGSGPAGLSSMPVIAPFVTGRK---CRPLLSTSRCDIEAYANVNQLKWVEDESNKD 187

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
            RF+R  +R  V  +      +    + +   L  +    +  L+   +  +  +I  IS
Sbjct: 188 TRFDRNFLRHKVTPLLRQRWPSFASAVNRSAQLCAEQEQLLTELLQPKVKAYQNTIQGIS 247

Query: 254 QDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVI 309
            + L ++S      +LR+        I LP    +  +       +     C+ I  + +
Sbjct: 248 IESLALESEAACKVILRLWLKQFS--ILLPTQAQLGVLWNEVANAQQDANPCLEINSIQL 305

Query: 310 DRRANFLWITRAVRNLPTLILYPEE-TTVWDGRYQF---QNLSDSLIQIGPQSYRKADVP 365
            R   +L+      ++       +E  T+ DG       Q +  +   + P   R     
Sbjct: 306 RRFQGYLYCLPQYGDVSQWNSELKEILTLPDGLGDIELKQTVGGNDSDLMPLFLRSPLSG 365

Query: 366 SGIPPIIAQRALSSMP-SKEGGKPLLAPFSRFMTKFDLP 403
             +        L + P +++  +       +   ++ +P
Sbjct: 366 ERVTVRFDSTGLIAHPEARQHSRK----MKKLYQEYGIP 400


>gi|49476703|ref|YP_034416.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196036405|ref|ZP_03103802.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W]
 gi|196041776|ref|ZP_03109066.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99]
 gi|196047393|ref|ZP_03114606.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108]
 gi|218901265|ref|YP_002449099.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820]
 gi|225862116|ref|YP_002747494.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102]
 gi|301051801|ref|YP_003790012.1| cell cycle protein [Bacillus anthracis CI]
 gi|61216513|sp|Q6HPV4|TILS_BACHK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49328259|gb|AAT58905.1| cell cycle protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|195991035|gb|EDX55006.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus W]
 gi|196021795|gb|EDX60489.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB108]
 gi|196027396|gb|EDX66013.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus NVH0597-99]
 gi|218539357|gb|ACK91755.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus AH820]
 gi|225790908|gb|ACO31125.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus 03BB102]
 gi|300373970|gb|ADK02874.1| cell cycle protein [Bacillus cereus biovar anthracis str. CI]
          Length = 476

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I ++  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|30260254|ref|NP_842631.1| hypothetical protein BA_0062 [Bacillus anthracis str. Ames]
 gi|47525316|ref|YP_016665.1| hypothetical protein GBAA_0062 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183097|ref|YP_026349.1| hypothetical protein BAS0062 [Bacillus anthracis str. Sterne]
 gi|165872559|ref|ZP_02217191.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488]
 gi|167635086|ref|ZP_02393403.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442]
 gi|167641508|ref|ZP_02399756.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193]
 gi|170688892|ref|ZP_02880094.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465]
 gi|170707562|ref|ZP_02898015.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389]
 gi|177655625|ref|ZP_02936988.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174]
 gi|190569013|ref|ZP_03021914.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227812737|ref|YP_002812746.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684]
 gi|229602718|ref|YP_002864715.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248]
 gi|254682310|ref|ZP_05146171.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CNEVA-9066]
 gi|254735465|ref|ZP_05193173.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744633|ref|ZP_05202312.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Kruger B]
 gi|254756338|ref|ZP_05208367.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Vollum]
 gi|254762394|ref|ZP_05214236.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Australia
           94]
 gi|61216616|sp|Q81VX7|TILS_BACAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|30253575|gb|AAP24117.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. Ames]
 gi|47500464|gb|AAT29140.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177024|gb|AAT52400.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|164711687|gb|EDR17232.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0488]
 gi|167510493|gb|EDR85891.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0193]
 gi|167529560|gb|EDR92310.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0442]
 gi|170127558|gb|EDS96432.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0389]
 gi|170667116|gb|EDT17877.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0465]
 gi|172080036|gb|EDT65135.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0174]
 gi|190559937|gb|EDV13921.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis Tsiankovskii-I]
 gi|227005702|gb|ACP15445.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. CDC 684]
 gi|229267126|gb|ACQ48763.1| tRNA(Ile)-lysidine synthetase [Bacillus anthracis str. A0248]
          Length = 476

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I ++  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|291482439|dbj|BAI83514.1| hypothetical protein BSNT_00119 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 472

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 133/332 (40%), Gaps = 27/332 (8%)

Query: 6   IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++SV+ F+      +  A I+V VSGG DSM LL ALH++    +       A  VDH  
Sbjct: 1   MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NVIAAHVDHRF 56

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++++R+V   C   ++        V+    +      AAAR+ RY    E     
Sbjct: 57  RGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKH 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +  AH  DDQ+ET+ M+  +     G GL+GM     +     I RPFL   +E+I
Sbjct: 117 QADYLALAHHGDDQVETMLMKLAKGTL--GTGLAGMQPVRRFGTG-RIIRPFLTITKEEI 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +  +  +S+  D SN  D + R R R+ V            K+FQ +   +      L
Sbjct: 174 LHYCRENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFL 233

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMERVM 291
                    + I + S   + I+S+ L  L     R    +    +   +P   S   + 
Sbjct: 234 QSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQ 293

Query: 292 LFLKSGKRGC------VSIGRVVIDRRANFLW 317
            FL   + G          G  V+      L+
Sbjct: 294 QFLDWAENGSPSGVLDFPKGLKVVKSYQTCLF 325


>gi|83950085|ref|ZP_00958818.1| PP-loop family protein [Roseovarius nubinhibens ISM]
 gi|83837984|gb|EAP77280.1| PP-loop family protein [Roseovarius nubinhibens ISM]
          Length = 396

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 93/381 (24%), Positives = 164/381 (43%), Gaps = 17/381 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            VAVSGGSDS  LL+ L      R    +   A++VDH LR  A  E   V+ +C+ L +
Sbjct: 2   AVAVSGGSDSTALLLGLKDWAQGRE---VSLYAVTVDHGLRAAAAHEAEAVAQLCAELAL 58

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H  + W+    Q  L  AAR ARY L+++ A + +   ++  HT +DQ ET+ MR  R 
Sbjct: 59  PHHCLEWQGWDGQGNLSDAARRARYDLMADWALSHDIHDLVLGHTQNDQAETLVMRLARG 118

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G+   G          + + RP L   RE +R++L +R+I W +DPSN D ++ RV
Sbjct: 119 AGLDGLAGMG---ARTARGAMTLHRPLLGVSRESLRAYLRRRDIGWADDPSNEDPQYARV 175

Query: 203 RVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R R  +       +++ AL       ++ R  + +       + +      ++  +Q   
Sbjct: 176 RTRAALSALESAGVEVEALAKVAGYLREARATIGHVAQEAAERLVQFDAGDLVIDAQAWG 235

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
                +   +L+ +     G        ++E ++  L+  +   +++       R +++ 
Sbjct: 236 EERRDIQRRILQAALRWVSGHGYPARGAAVEALLEALQREE--AMTLHGCRNIPRRDYIR 293

Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-PSGIPPIIAQRA 376
           ITR    +  L   P   T+WDGR+Q     +   +I         + P          +
Sbjct: 294 ITREWAAVADLEACPG--TLWDGRWQVSGPFEPEDRIRALGEASLSLCPDRRQAGYPAAS 351

Query: 377 LSSMPSKE-GGKPLLAPFSRF 396
           L + P+    G+ + AP +  
Sbjct: 352 LIASPAVWRDGQLIAAPLAGL 372


>gi|229074125|ref|ZP_04207172.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
 gi|228709019|gb|EEL61145.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock4-18]
          Length = 480

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  ++K     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAEKQLKIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVNYCNELNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|229094785|ref|ZP_04225791.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29]
 gi|228688653|gb|EEL42525.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-29]
          Length = 480

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKECSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVTCETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVNYCNEINLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|300119157|ref|ZP_07056858.1| cell cycle protein [Bacillus cereus SJ1]
 gi|298723479|gb|EFI64220.1| cell cycle protein [Bacillus cereus SJ1]
          Length = 279

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 114/247 (46%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I ++  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|229136910|ref|ZP_04265538.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26]
 gi|228646575|gb|EEL02781.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST26]
          Length = 480

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSVALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++    A
Sbjct: 182 EIVDYCHKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|16077135|ref|NP_387948.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221307877|ref|ZP_03589724.1| hypothetical protein Bsubs1_00340 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312199|ref|ZP_03594004.1| hypothetical protein BsubsN3_00340 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317132|ref|ZP_03598426.1| hypothetical protein BsubsJ_00340 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321395|ref|ZP_03602689.1| hypothetical protein BsubsS_00340 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|8039814|sp|P37563|TILS_BACSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|2632334|emb|CAB11843.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 472

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 133/332 (40%), Gaps = 27/332 (8%)

Query: 6   IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++SV+ F+      +  A I+V VSGG DSM LL ALH++    +       A  VDH  
Sbjct: 1   MKSVKDFLNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NVIAAHVDHRF 56

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++++R+V   C   ++        V+    +      AAAR+ RY    E     
Sbjct: 57  RGAESEEDMRFVQAYCKAEQLVCETAQINVTAYAQEKGLNKQAAARDCRYQFFEEIMSKH 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +  AH  DDQ+ET+ M+  +     G GL+GM     +     I RPFL   +E+I
Sbjct: 117 QADYLALAHHGDDQVETMLMKLAKGTL--GTGLAGMQPVRRFGTG-RIIRPFLTITKEEI 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +  +  +S+  D SN  D + R R R+ V            K+FQ +   +      L
Sbjct: 174 LHYCHENGLSYRTDESNAKDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFL 233

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMERVM 291
                    + I + S   + I+S+ L  L     R    +    +   +P   S   + 
Sbjct: 234 QSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQ 293

Query: 292 LFLKSGKRGC------VSIGRVVIDRRANFLW 317
            FL   + G          G  V+      L+
Sbjct: 294 QFLDWAENGGPSGVLDFPKGLKVVKSYQTCLF 325


>gi|152978797|ref|YP_001344426.1| tRNA(Ile)-lysidine synthetase [Actinobacillus succinogenes 130Z]
 gi|226695533|sp|A6VNE4|TILS_ACTSZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|150840520|gb|ABR74491.1| tRNA(Ile)-lysidine synthetase [Actinobacillus succinogenes 130Z]
          Length = 427

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/316 (24%), Positives = 133/316 (42%), Gaps = 20/316 (6%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            ++ +  +  L+A SGG+DS  LL        +R    ++  AI + H L   A D   +
Sbjct: 7   FQAQLQHSRYLIAFSGGADSTALLALFAKSRQNR--PHLQLRAIHIHHGLNVAANDWAAH 64

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C +L +   +   + +K ++G+   AREARYA I  H       ++ TAH   DQ 
Sbjct: 65  CRRICEKLEVPLIIERVEINK-KSGIEQGAREARYAAIRCH--RHADEIVATAHHLQDQT 121

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG+G     ++ LY   + I RP L   + ++ ++L  +++ W ED 
Sbjct: 122 ETFLLALKRGSGIKGLGAM-QRESRLY--GMPIFRPLLPFGKTELENYLRAQSLDWIEDD 178

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN D+R++R  +R  +  + L   +           +       LI + LT         
Sbjct: 179 SNADNRYDRNFLRNRILPV-LRRRWTDFDLAVSRSAQHCYEQERLIRELLTPAFEKNYRK 237

Query: 253 SQ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVS 303
           +       D           LLR+    C  ++ +P    + +++    F K        
Sbjct: 238 TDRTFALSDFAGYSPNKQNALLRMWLTAC--RVPMPEKMQLAQLIRDVVFAKPDAVPQFV 295

Query: 304 IGRVVIDRRANFLWIT 319
           +G  VI R  N L++T
Sbjct: 296 LGEQVIRRYQNRLYLT 311


>gi|229100858|ref|ZP_04231666.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28]
 gi|228682558|gb|EEL36627.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-28]
          Length = 283

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVICETIRVNVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIVKYCNELNLIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|152973911|ref|YP_001373428.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152022663|gb|ABS20433.1| tRNA(Ile)-lysidine synthetase [Bacillus cytotoxicus NVH 391-98]
          Length = 476

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 118/300 (39%), Gaps = 26/300 (8%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  S +E V  F +    L   + I+V VSGG DS+ LL  L   L  R    +      
Sbjct: 1   MKNSFVEKVDRFAKQHGVLEEHSTIVVGVSGGPDSLALLYYL---LEKREAKNLTIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISE 112
           VDH  R + + +++++V ++C  L I    +         +       AARE RYA +  
Sbjct: 58  VDHMFRGDESYEDLQFVENLCHELGILCETIRINVLQYQQQHGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +  +A  +   H  DDQ+ET+ MR  R    +G   +G+     +  N ++ RP L  
Sbjct: 118 IMRKYDAGYVALGHHGDDQVETILMRLVRGSTPQGY--AGIAVKRPFH-NGYLIRPLLAV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  Q  I    D SN  + + R R+R++V            + FQ     +  
Sbjct: 175 TKEEILDYCDQLGIMPRIDSSNKKEVYTRNRLRKYVLPYLKEENPQVHEHFQKFSQLMQE 234

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
             A L         + I   S   L +       L            S+P  R   +++L
Sbjct: 235 DEAYLQELAFEKMNKVITKKSDKYLVLSIPAFESL------------SMPLQRRGIQLIL 282


>gi|52145153|ref|YP_081675.1| cell cycle protein [Bacillus cereus E33L]
 gi|61216463|sp|Q63HD6|TILS_BACCZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51978622|gb|AAU20172.1| cell cycle protein [Bacillus cereus E33L]
          Length = 476

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKEHSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|253687355|ref|YP_003016545.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753933|gb|ACT12009.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 425

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 127/327 (38%), Gaps = 25/327 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL+A SGG DS  LL  L +V   R    +   A  + H L   A     +    C R
Sbjct: 8   GSILLAYSGGLDSSVLLHLLVAV---RQRSGLAIRAAYIHHGLNPLADSWAEHCRQQCER 64

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +++ + +         G+ AAAR ARY  +  H +      ++TA   DDQ ET  +  
Sbjct: 65  WQVSFASLPVMVEAQNGGIEAAARTARYQALQAHQQE--GETLLTAQHLDDQSETFLLAL 122

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+       T+       + RP L   R  + ++  +  + W ED SN D+RF
Sbjct: 123 KRGSGPAGLSAMAAQSTL---GQHRLIRPLLGFSRLQLEAYAQRHQLRWIEDDSNQDERF 179

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254
           +R  +RR +    L  L  +   F     +     A        +   S+  + Q     
Sbjct: 180 DRNFLRRQI----LPRLTQRWPHFSSAVARSAELCAEQEQLLDELLEESLQRLCQPDGAL 235

Query: 255 ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV 308
               ++ +     F LLR   A  G   ++P    ++R+   +   +      + + ++ 
Sbjct: 236 SIDGLVPLSPVRRFALLRRWLAQQG--ATMPSREQLQRLWDEIAMSRQDAEPILQLHQLQ 293

Query: 309 IDRRANFLWITRAVRNLPTLILYPEET 335
           I R    L++   + +L   IL  + T
Sbjct: 294 IRRFRQHLYLLPLMTSLQDCILPWQPT 320


>gi|330998820|ref|ZP_08322547.1| tRNA(Ile)-lysidine synthetase [Parasutterella excrementihominis YIT
           11859]
 gi|329576034|gb|EGG57553.1| tRNA(Ile)-lysidine synthetase [Parasutterella excrementihominis YIT
           11859]
          Length = 478

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 126/327 (38%), Gaps = 16/327 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P +++VA SGG DS  LL A+  +   +     + +A+ V H L + A +   +  +  
Sbjct: 46  KPINVIVAFSGGLDSSVLLYAVSQL---KGKSYGEITAVHVHHGLSKHANEWAEFCEERA 102

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +   +          G  A AR+ RY ++ E A+   A  I+TAH  DDQLET  +
Sbjct: 103 KKCGVRFVLRKVTVPSGGAGFEAEARQLRYEVLEEEARKAAADAILTAHHLDDQLETFLI 162

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R     G+        +L      I RP L  +R ++  F   R I W ED SN D 
Sbjct: 163 QWMRGSGPAGLAAM---PPLLRKDGCTIMRPLLGFQRTELERFAEIRGIKWVEDESNEDT 219

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           ++ R  +R  +   +L  +    K      +++    A  +                  L
Sbjct: 220 KYLRNAIRHNIIP-ELEKIRPGFKTAAARSIELIAEAAETLRDVAEDDFNQASENDGKYL 278

Query: 258 NIDSTLL------FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVSIG-RVVI 309
            ID  L         +LR+      G   LP  R +E +    ++ K+  C+     + I
Sbjct: 279 RIDDFLALPAGRRARVLRLWLDRV-GFKPLPRTRLLEMIRQIKETTKQSVCLMFSDGLEI 337

Query: 310 DRRANFLWITRAVRNLPTLILYPEETT 336
            +  + L +T   +      +  E   
Sbjct: 338 RKYGSRLMVTEHEKPESEAEIIVEWHG 364


>gi|228912803|ref|ZP_04076451.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846863|gb|EEM91867.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 480

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  +  I    DPSN  + + R R+R++V            +KFQ   +++    A
Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|118475834|ref|YP_892985.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam]
 gi|228931566|ref|ZP_04094473.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943870|ref|ZP_04106256.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089195|ref|ZP_04220477.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42]
 gi|229182458|ref|ZP_04309710.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1]
 gi|118415059|gb|ABK83478.1| cell cycle protein [Bacillus thuringiensis str. Al Hakam]
 gi|228601038|gb|EEK58606.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BGSC 6E1]
 gi|228694158|gb|EEL47839.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-42]
 gi|228815827|gb|EEM62062.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828118|gb|EEM73845.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 480

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  +  I    DPSN  + + R R+R++V            +KFQ   +++    A
Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|65317524|ref|ZP_00390483.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Bacillus anthracis str. A2012]
          Length = 480

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  +  I    DPSN  + + R R+R++V            +KFQ   +++    A
Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|312883825|ref|ZP_07743544.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368574|gb|EFP96107.1| cell cycle protein MesJ [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 436

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 144/380 (37%), Gaps = 26/380 (6%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           +   + P   I++A+SGG DS  +L  L     +     I   A+ V H L   A D  +
Sbjct: 12  IEQYIQPQGQIVLALSGGLDSRVMLALLKKYCENTGSKAI---AVHVHHGLSIHADDWAK 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                C    +   V           L  +AR+ARY  +S+H       +++T    DDQ
Sbjct: 69  QCQKWCLESGLECFVEHVSLDLKGKSLEESARDARYVALSKHLNEN--DVLLTGQHADDQ 126

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET  +  +R    +G+        +    N  + RP L  +R DI S+    N+ W  D
Sbjct: 127 LETFLLALRRGSGPRGLSCMPQVAPM---GNALLVRPLLHVKRHDIESYAKDSNLEWLND 183

Query: 192 PSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            SN D RFER  +R  +          +   +++  +L  +    +  LI +     +R 
Sbjct: 184 ESNQDKRFERNYIRHTIVPSLSKRWPHIQQSVQRSSELCAEQEALIEELISEKYRQCLRQ 243

Query: 249 IIAISQDILNIDST-LLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSI 304
             ++S   L   S  +   ++R+   +    I +P    +E   + +   +      + +
Sbjct: 244 DKSLSISKLIGHSENVRRSIIRMW--LSNESIKMPTRSQLEIIWQQVAMAQQDANPKLQL 301

Query: 305 GRVVIDRRANFLWITRAVR---NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
             + I R    L+I R  +   N    I + +   + D       +S    ++  QS   
Sbjct: 302 ANIEIRRFLEALYIVRDFQSLANWNKDIHFEQPCLLPDNLGTLVLISTGNGRLSKQSLNT 361

Query: 362 ADV-----PSGIPPIIAQRA 376
           A +     P G+      RA
Sbjct: 362 APLKVIFEPEGLVAHPTDRA 381


>gi|269138115|ref|YP_003294815.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda EIB202]
 gi|267983775|gb|ACY83604.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda EIB202]
 gi|304558160|gb|ADM40824.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda FL6-60]
          Length = 439

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 153/384 (39%), Gaps = 30/384 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ ++  R     L    H+LVA SGG DS  LL AL  + + R    ++   + V H L
Sbjct: 1   MNTLDIQRHIADRLAGRQHLLVAFSGGLDSTVLLHALVQLRASR-LPHLRLRVVHVHHGL 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              A   V +   VC   ++   V+  +    +  + AAAR+ARY  I+E   +     +
Sbjct: 60  SHFADQWVDHCESVCYLWQVPLHVLHVQVDTQRNSVEAAARDARYRGIAELIDSH--ETL 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TA   DDQ ET  +  +R       GLS M  ++ +     + RP L   RE + ++  
Sbjct: 118 LTAQHLDDQCETFLLALKRGSGP--TGLSAMAQSMPFFACEQL-RPLLDISREQLTAYAQ 174

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             ++SW ED SNTD RF+R  +R  +  +    L  +   F +   +  +  A       
Sbjct: 175 AHHLSWVEDDSNTDARFDRNFLRMRIVPL----LRERWPHFSEAVARSASLCAEQEQLLD 230

Query: 243 TVHMRSIIAIS--------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--- 291
            + M S+ A+           +L +     + LLR   A  G  + +P    ++R+    
Sbjct: 231 ELLMESLQALMSEDDALSIDGLLPLSEAKRYALLRRWIACFG--VMMPTREQLQRLWHEV 288

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
              +      + + +  + R          +  LP L    +E   WD R Q   L D L
Sbjct: 289 ALAREDAEPQLHLAKCQVRRFRRR------LYLLPPLRSLRDEVLRWDPR-QPLTLPDGL 341

Query: 352 IQIGPQSYRKADVPSGIPPIIAQR 375
            ++   S   +         +  R
Sbjct: 342 GELQLGSRGVSVRAPAPDEAVTIR 365


>gi|54293769|ref|YP_126184.1| hypothetical protein lpl0825 [Legionella pneumophila str. Lens]
 gi|61216435|sp|Q5WYB4|TILS_LEGPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|53753601|emb|CAH15059.1| hypothetical protein lpl0825 [Legionella pneumophila str. Lens]
          Length = 431

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 136/335 (40%), Gaps = 32/335 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V  L     ++V  SGG DS  LL  L S     +    +  A+ ++H +   + +  R+
Sbjct: 11  VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLYN----QLLAVHINHGISGNSLNWQRH 66

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C  L IA  +           +  AAR ARY   S   +  +   ++  H  DDQ 
Sbjct: 67  CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 123

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV ++  R     G+     C  +       ++RPFL C R ++  +     + W ED 
Sbjct: 124 ETVLLQLFRGAGVDGLAAMQECSNL---GAGQLARPFLTCPRVELEHYARIHELKWIEDE 180

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN D ++ R  +R  V  + L       +K+  +   ++ A          + + + I  
Sbjct: 181 SNQDTKYSRNYLRHRVMPLLL-------EKWPGVAGNISRAATHCQQAKANLEVLA-IKD 232

Query: 253 SQDILNIDSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKR 299
             D+LN    LL   L+          +   +   ++ LP  ++ +R+   ++F K    
Sbjct: 233 CPDLLNATDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFQRIIHEIIFAKLDAM 292

Query: 300 GCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPE 333
             VS  ++ + R    L++ +A + NLP  I + +
Sbjct: 293 PTVSWNQIQVRRFQQHLYLLKADQINLPKAIKWQQ 327


>gi|227326554|ref|ZP_03830578.1| tRNA(Ile)-lysidine synthetase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 457

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 127/330 (38%), Gaps = 29/330 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A SGG DS  LL  L ++   R    +      + H L   A     +    C R +
Sbjct: 29  ILLAYSGGLDSSVLLHLLVAL---RQRSGLPIRTAYIHHGLNPLADSWAEHCCQQCERWQ 85

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  + +S        G+ AAAR ARY  +  H +      ++TA   DDQ ET  +  +R
Sbjct: 86  VPFASLSVTVEAQNGGIEAAARTARYQALQAHLQE--GEALLTAQHLDDQSETFLLALKR 143

Query: 142 DYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                  GLS M  + L   N       + RP L   R  + ++  +  + W ED SN D
Sbjct: 144 GSGP--AGLSAMAASTLLGDNTTLGQHRLVRPLLGISRLQLEAYAQRHQLDWIEDDSNQD 201

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-- 254
           +RF+R  +RR +    L  L  +   F     +     A        +   S+  + Q  
Sbjct: 202 ERFDRNFLRRQI----LPRLTQRWPHFPSAVARSAQLCAEQEQLLDELLEESLQVLCQPD 257

Query: 255 ------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIG 305
                  ++ +     F LLR   A  G    +P    ++R+   +   +      + + 
Sbjct: 258 GALSVDGLIPLSPVRRFALLRRWLAQQGAM--MPAREQLQRLWDEVATSRQDAEPVLQLN 315

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEET 335
           ++ + R    L++   + +L   I+  +  
Sbjct: 316 QMQVRRFRQHLYLLPLMPSLKDRIIPWQSP 345


>gi|156935294|ref|YP_001439210.1| hypothetical protein ESA_03151 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533548|gb|ABU78374.1| hypothetical protein ESA_03151 [Cronobacter sakazakii ATCC BAA-894]
          Length = 434

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 140/350 (40%), Gaps = 23/350 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
            + +L     +LVA SGG DS  LL  L  +       +++  AI V H +   A     
Sbjct: 5   LLSALRGRRQLLVAYSGGLDSTVLLHQLVRLRET--HPELRLRAIHVHHGISPNADRWAA 62

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +    C R ++   +   + ++   GL A AR+ARY      A  +    ++TA   +DQ
Sbjct: 63  HCQAHCHRWQVPFELAYVELAQDGLGLEAQARKARYQAFE--AALLPGEALVTAQHLNDQ 120

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ +  +R       GL+ M   + +  ++ + RP L   R  + ++  +  + W +D
Sbjct: 121 CETLLLALKRGSGP--AGLAAMPAELPFADSV-LLRPLLNTPRAQLEAWASRHQLVWIDD 177

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            SN DDRF+R  +R  +    L A +    +      ++      L+ + LT  + +++ 
Sbjct: 178 ESNEDDRFDRNFLRLHILP-ALEARWPHFTQAAARSAQLCGEQEQLLDELLTPELAALM- 235

Query: 252 ISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVMLFL---KSGKRGCVSI 304
                L I        L+ +A     +     ++P   +++R+   +   +      +  
Sbjct: 236 -DGKTLAIAPLETMSALKRAALLRRWLAALNAAMPSRATLQRLWDEVAQSREDAAPRLKC 294

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
           G     R    LW  RA +     +L       W   ++   L +SL  +
Sbjct: 295 GDYEARRYQGRLWWVRARQGQRQTVLA------WPDPHKALLLPESLGCL 338


>gi|303256929|ref|ZP_07342943.1| tRNA(Ile)-lysidine synthase [Burkholderiales bacterium 1_1_47]
 gi|302860420|gb|EFL83497.1| tRNA(Ile)-lysidine synthase [Burkholderiales bacterium 1_1_47]
          Length = 478

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 127/327 (38%), Gaps = 16/327 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P +++VA SGG DS  LL A+  +   +     + +A+ V H L + A +   +  +  
Sbjct: 46  KPINVIVAFSGGLDSSVLLYAVSQL---KGKSYGEITAVHVHHGLSKHANEWAEFCEERA 102

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +   +          G  A AR+ RY ++ E A+   A  I+TAH  DDQLET  +
Sbjct: 103 KKCGVRFVLRKVTVPSGGAGFEAEARQLRYEVLEEEARKSAADAILTAHHLDDQLETFLI 162

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R     G+        +L      I RP L  +R ++  F   R I W ED SN D 
Sbjct: 163 QWMRGSGPAGLAAM---PPLLRKDGCTIMRPLLGFQRTELERFAEIRGIKWVEDESNEDM 219

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS---- 253
           ++ R  +R  +   +L  +    K      +++    A  +       +           
Sbjct: 220 KYLRNAIRHNIIP-ELEKIRPGFKTAAARSIELIAEAAETLRDVAEDDINQASENDGKYL 278

Query: 254 --QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVSIG-RVVI 309
              D L + +     +LR+      G   LP  R +E +    ++ K+  C+     + I
Sbjct: 279 RIDDFLALPAGRRARVLRLWLDRV-GFKPLPRTRLLEMIRQIKETTKQSVCLMFSDGLEI 337

Query: 310 DRRANFLWITRAVRNLPTLILYPEETT 336
            +  + L +T   +      +  E   
Sbjct: 338 RKYGSRLMVTEHEKPESEAEIIVEWHG 364


>gi|324324053|gb|ADY19313.1| tRNA(Ile)-lysidine synthetase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 476

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|325202116|gb|ADY97570.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240149]
          Length = 426

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKICVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTARWLTFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 295

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 296 YAGRLFVFR 304


>gi|315179362|gb|ADT86276.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii NCTC 11218]
          Length = 432

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 83/395 (21%), Positives = 147/395 (37%), Gaps = 29/395 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            H ++A SGG DS  LL  +     +R    I   A+ V H L   A +  +     C  
Sbjct: 17  RHFVLAFSGGVDSRVLLALIARYRQERE---ISVQAVHVHHGLSVNADEWAQRCQHWCQA 73

Query: 80  LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             +  ++      +     +   AR+ARYA ++ H      + ++     DDQLET  + 
Sbjct: 74  AHVPLAIERVSLATASGESIEKLARDARYAALATHM--HPGSTLLLGQHADDQLETFLLA 131

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    KG+                + RP L   R  I  F +Q ++ W ED SN D+R
Sbjct: 132 LKRGSGPKGLAAMAQQAPFS---CGQLLRPLLSVSRAQIEYFAMQHHLQWVEDESNQDER 188

Query: 199 FERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           +ER  +R  V  I      ++   +++   L  + +  +A L+   L    +   ++S  
Sbjct: 189 YERNFLRHRVTPILSERWPSIRQAVQRSAQLCAEQDELLAELLRDALHAATQGDGSLSVA 248

Query: 256 ILNIDSTLLFY-LLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDR 311
           +L   S  L   LLR   A  G  +++P    ++   R +   ++     + +G   I R
Sbjct: 249 MLTSHSDALRRQLLRYWLAAQG--LAMPSRIQLDVLWREVALAEADANPKLKLGECEIRR 306

Query: 312 RANFLW---ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
               L+   + + V      ++      + D   Q              + R    P  +
Sbjct: 307 FQQCLYCVPLVQDVSAWQQPLVLGCALALPDHLGQLTLAKSEQG-----TLRCPSDPEHL 361

Query: 369 PPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
                   LS+ P   GG   L    +   ++ +P
Sbjct: 362 WVTFNPEGLSACPVGRGGTRKL---KKLFQEYQVP 393


>gi|77360937|ref|YP_340512.1| lysidine forming enzyme [Pseudoalteromonas haloplanktis TAC125]
 gi|76875848|emb|CAI87069.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Pseudoalteromonas haloplanktis TAC125]
          Length = 467

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 17/327 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  +H++        ++ SAI + H L + A D   +   +C+ L + 
Sbjct: 59  VALSGGVDSVVLLHLMHALRVQ--DPALQVSAIYIHHGLSQYADDWQVFCQTLCNELNVP 116

Query: 84  HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                     + +T L A AR+ARY  + E   + + ++I+     +DQ+ET  +R +R 
Sbjct: 117 FQTAKVNIEQQSRTSLEAQARDARYQALDEL--SPHGSIILLGQHLNDQIETFLLRLKRG 174

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              KG+G   M             RP L  +R DI +F  Q  ++   D SNTD+RFER 
Sbjct: 175 SGLKGLG--AMQRERTLTSGRLCFRPLLAVKRSDIEAFAAQYALNHVTDDSNTDERFERN 232

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
            +R+ V  I L A +   ++     + +      L+ +Y  + +   +  SQ  LNI + 
Sbjct: 233 FMRQQVVPI-LAARFNGFEQCTARSISLLQQQHALLNEYTHIDLTQCVN-SQQALNISAI 290

Query: 263 LLFYLLRVSAAICGGQIS----LPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRANF 315
             F  +R +  +          LP  + +E+++   +  K+  +  + +    I R    
Sbjct: 291 AKFTPIRTANVVRAWLELFTHVLPSQKQLEQIINQAIAAKTDAQMLIELSDGQIRRHQGH 350

Query: 316 LW-ITRAVRNLPTLILYPEETTVWDGR 341
           L+ +    + L  +++   E  + DGR
Sbjct: 351 LYFVVPRTQILNNILITRSELKLADGR 377


>gi|228925317|ref|ZP_04088414.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228834364|gb|EEM79904.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 480

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKVLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  +  I    DPSN  + + R R+R++V            +KFQ   +++    A
Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|229170914|ref|ZP_04298517.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3]
 gi|228612580|gb|EEK69799.1| tRNA(Ile)-lysidine synthase [Bacillus cereus MM3]
          Length = 480

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+           AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCRGLGVICETIRINVSQYQQQHGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  +  I    DPSN  + + R R+R++V            +KFQ   ++V    A
Sbjct: 182 EIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENSQVHEKFQKFSMQVQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|323497993|ref|ZP_08103002.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326]
 gi|323317038|gb|EGA70040.1| tRNA(Ile)-lysidine synthase [Vibrio sinaloensis DSM 21326]
          Length = 434

 Score =  237 bits (604), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 149/400 (37%), Gaps = 29/400 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L   + +++  SGG DS  LL             + +  A+ V H L   A       +
Sbjct: 14  HLNPHSRLVIGFSGGVDSQVLLTLAARFGQQ---YQCECLAVHVHHGLSGNADRWAEQCA 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                  +   V           + A AREARY  +++H +  +  +++T    DDQLET
Sbjct: 71  QWAHERGVPFVVEKVILQPQGKSIEACAREARYQALAQHLE--HGDVLLTGQHADDQLET 128

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R    KG+     C +     N ++ RP L   R  I +F ++  + W ED SN
Sbjct: 129 FLLAVKRGSGPKGLSAMAQCRSFA---NGYMLRPLLEVNRSTIEAFAVEHQLQWAEDESN 185

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253
            D RF+R  +R  V    L+  +   K       ++      L+ + L+  +  + A   
Sbjct: 186 QDTRFDRNYIRHQVAP-ALNQRWPHFKAAVQRSAQLCFEQEALLDELLSEKLSELTAADD 244

Query: 254 ----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGR 306
                 + ++   +   L+R+   +   ++ +P    ++++       +      +++ +
Sbjct: 245 GLSIAGLTSLSELMRGRLIRMW--LSQHRVLMPSRDHLDKIWSQVAMAQQDANPILNLAQ 302

Query: 307 VVIDRRANFLWITRA---VRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
             + R  + L++  +   V              + D          +   +  Q+ + A 
Sbjct: 303 GQVRRFNHRLYLVESLADVSAWSHQAALESSMILPDNLGTLLLRKSTQGHLSYQALQTAP 362

Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
           +     P    + LS+ P++ G    L    +   ++ +P
Sbjct: 363 LSVIFEP----QGLSARPAERGHSRKL---KKLFQEYQVP 395


>gi|260596609|ref|YP_003209180.1| tRNA(Ile)-lysidine synthase [Cronobacter turicensis z3032]
 gi|260215786|emb|CBA28217.1| tRNA(Ile)-lysidine synthase [Cronobacter turicensis z3032]
          Length = 444

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 153/402 (38%), Gaps = 25/402 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
            + +L     +LVA SGG DS  LL  L  +       +++  AI V H +   A     
Sbjct: 15  LLSALRGRRQLLVAYSGGLDSTVLLHQLVRLRET--HPELRLRAIHVHHGISPNADRWAA 72

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +   +C R ++   +   + ++   GL A AR+ARY      A  +    ++TA   DDQ
Sbjct: 73  HCQAICHRWQVPFELAYVELAQDGLGLEAQARKARYQAFE--AALLPGEALVTAQHLDDQ 130

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+ +  +R       GL+ M   + +  +  I RP L   R  + ++  +  + W +D
Sbjct: 131 CETLLLALKRGSGP--AGLAAMPAELPFAGSA-ILRPLLNTSRAQLEAWADRHQLLWIDD 187

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            SN DDRF+R  +R  +    L A +    +      ++      L+ + L   + +++ 
Sbjct: 188 ESNQDDRFDRNFLRLRILP-ALQARWPHFTQAAARSAQLCGEQEQLLDELLAPELAALMD 246

Query: 252 ----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSI 304
                   +  +       LLR   A       +P   +++R+   +   +      +  
Sbjct: 247 GKTLAIAPLETMSEIKRAALLRRWLAAL--NAPMPARATLQRLWDEVAQSREDAAPRLKS 304

Query: 305 GRVVIDRRANFLWITRAVRNLPTLIL-YPEETTVWD-----GRYQFQNLSDSLIQIGPQS 358
           G     R    LW  RA +     +L +P+           GR  F    D++    P  
Sbjct: 305 GDYEARRYQGRLWWIRARQGQRQTVLAWPDPHVALPLPEALGRLSFGEAGDAVRPPRPGE 364

Query: 359 YRKADVP-SGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399
                    G+  I+ +    ++      +  + P+ R +T 
Sbjct: 365 SVSVRFSAPGMLYIVGRDRGRTLKKLW-QELQVPPWRRELTP 405


>gi|229027910|ref|ZP_04184065.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271]
 gi|228733424|gb|EEL84251.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1271]
          Length = 480

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKEHSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++    A
Sbjct: 182 EIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENSQVHEKFQKFSMQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|308389283|gb|ADO31603.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis alpha710]
          Length = 436

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 113/309 (36%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWICGAGYF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K GC ++    +  
Sbjct: 248 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGCWNLQGFELHH 305

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 306 YAGRLFVFR 314


>gi|229119726|ref|ZP_04248988.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201]
 gi|228663751|gb|EEL19329.1| tRNA(Ile)-lysidine synthase [Bacillus cereus 95/8201]
          Length = 480

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  ++E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVKKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  +  I    DPSN  + + R R+R++V            +KFQ   +++    A
Sbjct: 182 EIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|213852724|ref|ZP_03382256.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 311

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 115/306 (37%), Gaps = 16/306 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
           +R  +R     + L   +            +      L+ + L   +   I  ++  L +
Sbjct: 187 DRNFLRLRALPL-LQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGTLRL 244

Query: 260 DSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRR 312
              +    +R +A     +      +P   ++ER+       +     C+  G   I R 
Sbjct: 245 SPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRY 304

Query: 313 ANFLWI 318
            + LW 
Sbjct: 305 QSQLWW 310


>gi|328542547|ref|YP_004302656.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           [polymorphum gilvum SL003B-26A1]
 gi|326412293|gb|ADZ69356.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Polymorphum gilvum SL003B-26A1]
          Length = 442

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 157/386 (40%), Gaps = 16/386 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             + +AVSGG+DS+ LL         R+    +    +VDH LR  A+ E  +V  +C+ 
Sbjct: 29  DRLAIAVSGGADSLALLHLFADWQR-RTARAPQAHVFTVDHGLRAEARAEAEHVHRLCAG 87

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             + H +++W   K    L A AREARY LI    + ++ + +  AH  DDQ ET   R 
Sbjct: 88  YCLPHEILTWAGRKGAPNLQATAREARYTLIGARMRALSLSALAVAHHRDDQAETFLDRL 147

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G+      D     + + I RP L   +  + + L    +SW EDPSNTD R+
Sbjct: 148 TRGSGVYGLAAMA-ADEADGPVGVRILRPLLDVPKARLIATLEAAGLSWFEDPSNTDLRY 206

Query: 200 E-----RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           +     R+ +      +D   L     + +     ++     L+  +  VH      I+ 
Sbjct: 207 KRARLRRLGLLLAEEGLDQARLAATAARLRRAADALDGWAERLVRDHCRVHPAGPAEIAV 266

Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
             L      +    L       GG    P   ++E     L +G+    ++G VV+ R  
Sbjct: 267 APLAEAPEEVRLRSLSRLIRATGGAEHGPRLEALEPATAALLAGEAASRTLGGVVLRRSG 326

Query: 314 NFLWITRAV-RNLP-TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV---PSGI 368
             L + R   R  P  L L P E  +WDGRY  +   D    +  ++  +A V       
Sbjct: 327 PVLRLWRERGRTWPAPLDLAPGEDGIWDGRYLVRAPVDG-GSLAVRALAEAGVEIDRLTW 385

Query: 369 PPIIAQRALSSMPSK--EGGKPLLAP 392
           P    + A +  P+     G+ L  P
Sbjct: 386 PTGWPRDAFACAPAIVDADGRLLFVP 411


>gi|254724204|ref|ZP_05185989.1| cell cycle protein [Bacillus anthracis str. A1055]
          Length = 476

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FVR    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVRQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V  +C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQGLCKGLGVICETIRINVSQYQKQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I ++  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVNYCNELKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|228983319|ref|ZP_04143533.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229194454|ref|ZP_04321258.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293]
 gi|228589044|gb|EEK47058.1| tRNA(Ile)-lysidine synthase [Bacillus cereus m1293]
 gi|228776433|gb|EEM24785.1| tRNA(Ile)-lysidine synthase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 480

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++    A
Sbjct: 182 EIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|212637909|ref|YP_002314429.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1]
 gi|212559389|gb|ACJ32444.1| tRNA(Ile)-lysidine synthase MesJ [Anoxybacillus flavithermus WK1]
          Length = 460

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 142/377 (37%), Gaps = 36/377 (9%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  F+     L     ++V VSGG DS+ LL  L    S+R    I+  A  VDH L
Sbjct: 2   LEVVHEFIEKHQLLERGTTVVVGVSGGPDSLALLHFL---WSERERYDIQLVAAHVDHML 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++++ +V   C +  I        V     +   G+  AAR+ RY    +     
Sbjct: 59  RGKQSEEDMHFVKHFCEQHSIICEATQLDVPAYMERTGKGVQEAARDCRYTFFEQVMYKH 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +  AH  DDQ+ETV MR  R    +G   +G+     +    +I RPFL   R  I
Sbjct: 119 HARCVALAHHGDDQIETVLMRLVRGSTTRGY--AGIPVKRPFGSG-YIVRPFLCIDRRQI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +  Q  +    DPSN  D + R R R  V            + FQ     ++   A L
Sbjct: 176 EQYCQQNGLHARHDPSNEKDDYTRNRFRHAVLPFFKQENIRAHEHFQQFSEMISEDEAFL 235

Query: 238 IP------KYLTVHMRSIIAIS-QDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSMER 289
                   K++       + I     + +   L    +++    + G   S      + +
Sbjct: 236 EQLTKEELKHVVDQQEGCVRIDIPSFIRMPKPLQRRGIQLILNYLYGNVPSSLSSIHINQ 295

Query: 290 VMLFLKSGK-RGCVSI--GRVVIDRRANFL--WITRAVRNLPTLILYPEETTVWDG---- 340
            + FLK     G +    G  VI +    +  +  R  R    L   P+   + +G    
Sbjct: 296 ALQFLKRQHPSGMLHFPNGLKVIRQYEVCIFTFQQRQTREYEFLFHVPDTLVLPNGCQLI 355

Query: 341 -----RYQFQNLSDSLI 352
                RY F    D ++
Sbjct: 356 SQFVDRYPFIEDDDHIV 372


>gi|332532221|ref|ZP_08408102.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038319|gb|EGI74764.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 434

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 18/334 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+ LL  + ++  D     I  SAI V H L + A D   +  +VC  L + 
Sbjct: 27  VALSGGVDSVVLLHLMRTLKVDN--PAINVSAIYVHHGLSQYADDWQHFCKNVCIELNVP 84

Query: 84  HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                     + +T L A AR+ARY  + E   +   ++I+     +DQ+ET  +R +R 
Sbjct: 85  FEAAKVVIEQQSRTSLEAQARDARYKALDEL--SPQGSIILLGQHLNDQVETFLLRLKRG 142

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              KG+G   M             RP L   R DI +F  Q +IS   D SNTD+ F+R 
Sbjct: 143 SGLKGLGS--MYKERFLQSGRICFRPLLNVARSDIEAFATQFSISHITDDSNTDESFDRN 200

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-----DIL 257
            +R  +  + L   +   ++     +++      L+ +Y  + +   I   Q      I 
Sbjct: 201 FLRSKIVPV-LAERFTGFEQCTARSIELLQQQQTLLDEYTQLDLNKCINEHQALCISQIN 259

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRAN 314
              +  +  ++R    +      +P  + +E+++      K+  +  + +    I R   
Sbjct: 260 EYSAARIANIVRAWLTLFTQV--MPSQKQLEQIINQAMCAKNDAQMRIDLLDGQIRRHQG 317

Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS 348
           +L+       L  + L   +  + DGR   +++ 
Sbjct: 318 YLYFVTPSEVLTDIELNHSQLKLADGRLLIKSIG 351


>gi|54296810|ref|YP_123179.1| hypothetical protein lpp0850 [Legionella pneumophila str. Paris]
 gi|61216438|sp|Q5X6W4|TILS_LEGPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|53750595|emb|CAH12000.1| hypothetical protein lpp0850 [Legionella pneumophila str. Paris]
          Length = 431

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 130/329 (39%), Gaps = 20/329 (6%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V  L     ++V  SGG DS  LL  L S     +    +  A+ ++H +   + +  R+
Sbjct: 11  VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLSN----QLLAVHINHGISGNSLNWQRH 66

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C  L IA  +           +  AAR ARY   S   +  +   ++  H  DDQ 
Sbjct: 67  CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 123

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV ++  R     G+     C  +       ++RPFL C R ++  +     + W ED 
Sbjct: 124 ETVLLQLFRGAGVDGLAAMQECSNL---GAGQLARPFLTCPRVELEHYARIHELKWIEDE 180

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMRS 248
           SN D ++ R  +R  V  + L                   A A L    I     +   +
Sbjct: 181 SNQDTKYSRNYLRHRVMPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCPDLLNAT 240

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305
              + + I  ++   +  +L+    +   +I LP  ++  R+   ++F K      VS  
Sbjct: 241 DHLLIEPIKGLEFERITNVLKFW--LKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWN 298

Query: 306 RVVIDRRANFLWITRAVR-NLPTLILYPE 333
           ++ + R    L++ +A + NLP  I + +
Sbjct: 299 QIQVRRFQQHLYLLKADQINLPKAIKWQQ 327


>gi|148360562|ref|YP_001251769.1| cell cycle protein MesJ [Legionella pneumophila str. Corby]
 gi|148282335|gb|ABQ56423.1| cell cycle protein MesJ [Legionella pneumophila str. Corby]
          Length = 431

 Score =  236 bits (602), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 129/335 (38%), Gaps = 32/335 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V  L     ++V  SGG DS  LL  L S     +    +  A+ ++H +   + +  R+
Sbjct: 11  VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLSN----QLLAVHINHGISGNSLNWQRH 66

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C  L IA  +           +  AAR ARY   S   +  +   ++  H  DDQ 
Sbjct: 67  CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 123

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV ++  R     G+     C  +       ++RPFL C R ++  +     + W ED 
Sbjct: 124 ETVLLQLFRGAGVDGLAAMQECSNLGVGQ---LARPFLTCPRVELEHYARIHELKWIEDE 180

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN D ++ R  +R  V  + L      +            A A L            I  
Sbjct: 181 SNQDTKYSRNYLRHRVMPLLLEKWPGVVGNISRAATHCQQAKANLEVLA--------IKD 232

Query: 253 SQDILNIDSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKR 299
             D+LN    LL   L+          +   +   ++ LP  ++  R+   ++F K    
Sbjct: 233 CPDLLNATDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFHRIVHEIIFAKLDAM 292

Query: 300 GCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPE 333
             VS  ++ + R    L++ +A + NLP  I + +
Sbjct: 293 PTVSWDQIQVRRFQQHLYLLKADQINLPKAIKWQQ 327


>gi|229159237|ref|ZP_04287262.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803]
 gi|228624252|gb|EEK81053.1| tRNA(Ile)-lysidine synthase [Bacillus cereus R309803]
          Length = 480

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  +   + +     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLEERSTIVVGVSGGPDSLALLYYL---LEKKEAKRWEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRSFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  + N+    DPSN  + + R R+R++V            +KFQ   V++    A
Sbjct: 182 EIINYCNKLNVIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSVQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|296106371|ref|YP_003618071.1| cell cycle protein MesJ [Legionella pneumophila 2300/99 Alcoy]
 gi|295648272|gb|ADG24119.1| cell cycle protein MesJ [Legionella pneumophila 2300/99 Alcoy]
          Length = 433

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 129/335 (38%), Gaps = 32/335 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V  L     ++V  SGG DS  LL  L S     +    +  A+ ++H +   + +  R+
Sbjct: 13  VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLSN----QLLAVHINHGISGNSLNWQRH 68

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C  L IA  +           +  AAR ARY   S   +  +   ++  H  DDQ 
Sbjct: 69  CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV ++  R     G+     C  +       ++RPFL C R ++  +     + W ED 
Sbjct: 126 ETVLLQLFRGAGVDGLAAMQECSNLGVGQ---LARPFLTCPRVELEHYARIHELKWIEDE 182

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN D ++ R  +R  V  + L      +            A A L            I  
Sbjct: 183 SNQDTKYSRNYLRHRVMPLLLEKWPGVVGNISRAATHCQQAKANLEVLA--------IKD 234

Query: 253 SQDILNIDSTLLFYLLR----------VSAAICGGQISLPGYRSMERV---MLFLKSGKR 299
             D+LN    LL   L+          +   +   ++ LP  ++  R+   ++F K    
Sbjct: 235 CPDLLNATDHLLIEPLKGLEFERITNVLKFWLKKNRVQLPSSKTFHRIVHEIIFAKLDAM 294

Query: 300 GCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPE 333
             VS  ++ + R    L++ +A + NLP  I + +
Sbjct: 295 PTVSWDQIQVRRFQQHLYLLKADQINLPKAIKWQQ 329


>gi|52841023|ref|YP_094822.1| cell cycle protein MesJ [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|61216449|sp|Q5ZXE5|TILS_LEGPH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52628134|gb|AAU26875.1| cell cycle protein MesJ [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 433

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 130/329 (39%), Gaps = 20/329 (6%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V  L     ++V  SGG DS  LL  L S     +    +  A+ ++H +   + +  R+
Sbjct: 13  VARLKQFKKLIVGFSGGLDSTVLLHVLASTPPLSN----QLLAVHINHGISGNSLNWQRH 68

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C  L IA  +           +  AAR ARY   S   +  +   ++  H  DDQ 
Sbjct: 69  CEQLCLDLGIAF-IAKAIEFDRSANVEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQA 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV ++  R     G+     C  +       ++RPFL C R ++  +     + W ED 
Sbjct: 126 ETVLLQLFRGAGVDGLAAMQECSNL---GAGQLARPFLTCPRVELEHYARIHELKWIEDE 182

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMRS 248
           SN D ++ R  +R  V  + L                   A A L    I     +   +
Sbjct: 183 SNQDTKYSRNYLRHRVMPLLLEKWPGVAGNISRAATHCQQAKANLEVLAIKDCPDLLNAT 242

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305
              + + I  ++   +  +L+    +   +I LP  ++  R+   ++F K      VS  
Sbjct: 243 DHLLIEPIKGLEFERITNVLKFW--LKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWN 300

Query: 306 RVVIDRRANFLWITRAVR-NLPTLILYPE 333
           ++ + R    L++ +A + NLP  I + +
Sbjct: 301 QIQVRRFQQHLYLLKADQINLPKAIKWQQ 329


>gi|118443998|ref|YP_877128.1| cell cycle protein MesJ [Clostridium novyi NT]
 gi|118134454|gb|ABK61498.1| Cell cycle protein MesJ, putative [Clostridium novyi NT]
          Length = 464

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 24/319 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78
             ++VA+SGG DS+ LL  LH++  +     I   A  V+HCLR  A D +  YV  +C 
Sbjct: 19  DKVVVALSGGPDSICLLHILHTLKDE---INISIVAAHVNHCLRGEAADNDEMYVKKICE 75

Query: 79  RLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L I   V    V   + +       A RE RY    E    IN   I  AH  +DQ ET
Sbjct: 76  ELGIQCFVKREDVHRISKERGISCEMAGREVRYQFFEEVLHKINGNKIAIAHNANDQAET 135

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V MR  R     G GL G+        N++  RP +   R++I ++     ++   D +N
Sbjct: 136 VLMRILR-----GTGLEGLVGIRPVRDNIF-VRPIINLTRDEIENYCDINKLNPRIDKTN 189

Query: 195 TDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
            ++ + R ++R  +           +   + +F D        +NN       +Y  +  
Sbjct: 190 FENIYTRNKIRLELIPYIQKNFNSDVIEVLNRFSDTVKVDNEYINNVAKEKYNEYSEISE 249

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-G 305
             II +   +      +L  ++R++     G ++      +  ++   K      + +  
Sbjct: 250 EKII-LKGQLFKEHEAILTRVIRIAIKNIKGNLNNLEKNHIYDIIDIQKKSTGKYIMLPS 308

Query: 306 RVVIDRRANFLWITRAVRN 324
            + +      +++ +  + 
Sbjct: 309 GIRVTNNYGDIYVYKEEKK 327


>gi|238918797|ref|YP_002932311.1| tRNA(Ile)-lysidine synthetase [Edwardsiella ictaluri 93-146]
 gi|259533714|sp|C5B7T0|TILS_EDWI9 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|238868365|gb|ACR68076.1| tRNA(Ile) [Edwardsiella ictaluri 93-146]
          Length = 439

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 89/410 (21%), Positives = 165/410 (40%), Gaps = 30/410 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ ++  R     L     +LVA SGG DS  LL AL  + +      ++   + V H L
Sbjct: 1   MNTLDIQRHIADRLAGRRRLLVAFSGGLDSTVLLHALVQLRASC-LPHLRLRVVHVHHGL 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              A   V +   VC   ++   V+  +    +  + AAAR+ARY  I+E   +     +
Sbjct: 60  SHFADQWVDHCESVCYLWQVPLHVLHVQVDTQRNSVEAAARDARYQAIAELIDSR--ETL 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TA   DDQ ET  +  +R       GLS M  ++ + +   + RP L   RE + ++  
Sbjct: 118 LTAQHLDDQCETFLLALKRGSGP--TGLSAMAQSMPFFVCEQL-RPLLDISREQLTAYAQ 174

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             ++SW ED SN D RF+R  +R  +  +    L  +   F +   +  +  A       
Sbjct: 175 VHDLSWVEDDSNADARFDRNFLRMRIVPL----LRERWPHFSEAVARSASLCAEQEQLLD 230

Query: 243 TVHMRSIIAIS--------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--- 291
            + M S+ A+           +L +     + LLR   A  G  + +P    ++R+    
Sbjct: 231 ELLMESLQALMSEDDALSIDGLLPLSEAKRYALLRRWIACFG--VMMPTREQLQRLWHEV 288

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET---TVWDGRYQFQNLS 348
              +      + + +  + R    L++   +R+L   +L  +     T+ DG  + Q  S
Sbjct: 289 ALAREDAEPQLHLAKCQVRRFRRRLYLLPTLRSLRDEVLRWDPHQPLTLPDGLGELQMGS 348

Query: 349 DSLIQIGPQSYRKADV---PSGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395
             +    P       +     G+  I+ +R   ++      +  + P+ R
Sbjct: 349 RGVCVRAPTPGEAVTIRFCAQGVLRIVGRRHSRAIKKIW-QELHIPPWER 397


>gi|260767808|ref|ZP_05876743.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii CIP 102972]
 gi|260617317|gb|EEX42501.1| tRNA(Ile)-lysidine synthetase [Vibrio furnissii CIP 102972]
          Length = 432

 Score =  235 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 123/303 (40%), Gaps = 18/303 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++A SGG DS  LL  +     +R    I   A+ V H L   A +  +     C    +
Sbjct: 20  VLAFSGGVDSRVLLALIARYRQER---DISVQAVHVHHGLSVNADEWAQRCQHWCQAAHV 76

Query: 83  AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             ++      +     +   AREARYA ++ H      + ++     DDQLET  +  +R
Sbjct: 77  PLAIERVSLATASGESIEKLAREARYAALATHM--HPGSTLLLGQHADDQLETFLLALKR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG+                + RP L   R  I  F LQ ++ W ED SN D+R+ER
Sbjct: 135 GSGPKGLASMAQQAPFS---CGQLLRPLLSVSRAQIEHFALQHHLQWVEDESNQDERYER 191

Query: 202 VRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             +R  V  I      ++   +++   L  + +  +A L+   L    +   ++S  +L 
Sbjct: 192 NFLRHRVTPILSERWPSIRQAVQRSAQLCAEQDELLAELLRDALHAATQGDGSLSVAVLT 251

Query: 259 IDSTLLFY-LLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314
             S +L   LLR   A  G  +++P    ++   R +   ++     + +G   I R   
Sbjct: 252 SHSDVLRRQLLRYWLAAQG--LAMPSRVQLDVLWREVALAEADANPKLKLGECEIRRFQQ 309

Query: 315 FLW 317
            L+
Sbjct: 310 RLY 312


>gi|50119989|ref|YP_049156.1| tRNA(Ile)-lysidine synthetase [Pectobacterium atrosepticum
           SCRI1043]
 gi|61216498|sp|Q6D8C5|TILS_ERWCT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49610515|emb|CAG73960.1| cell cycle protein [Pectobacterium atrosepticum SCRI1043]
          Length = 440

 Score =  235 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 130/340 (38%), Gaps = 25/340 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++  V        IL+A SGG DS  LL  L +V   R        A  + H L   A
Sbjct: 9   ELLQTIVTQTAGCGSILLAYSGGLDSSVLLHLLVTV---RQRSGQTIRAAYIHHGLNPLA 65

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                +    C R ++  S ++        G+ AAAR ARY  +  H K      ++TA 
Sbjct: 66  DSWAEHCRQQCERWQVPFSSLAVTVEAQNGGIEAAARTARYQALQVHLKE--GETLLTAQ 123

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ET  +  +R     G+          +  +  + RP L   R  + ++  +  +
Sbjct: 124 HLDDQSETFLLALKRGSGPAGLSAMAANS---FLGHHRLVRPLLGFSRLQLEAYAQRHQL 180

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
            W ED SN D+RF+R  +RR +    L  L  +   F     +     A        +  
Sbjct: 181 RWIEDDSNQDERFDRNFLRRQI----LPRLTQRWPHFPSAVARSAELCAEQEQLLDELLE 236

Query: 247 RSIIAISQ--------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-- 296
            S+  + Q         ++ +     F LLR   A  G   ++P    ++R+   + +  
Sbjct: 237 ESLRTLRQPDGALSIDGLVPLSPVRRFALLRRWLAQQG--ATMPARDQLQRLWDEVAASR 294

Query: 297 -GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335
                 + + ++ I R    L++   + +L   +L  + T
Sbjct: 295 RDAEPILQLNQMQIRRFRQHLYLLPLMPSLKDRVLPWQPT 334


>gi|219666213|ref|YP_002456648.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2]
 gi|219536473|gb|ACL18212.1| tRNA(Ile)-lysidine synthetase [Desulfitobacterium hafniense DCB-2]
          Length = 472

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 21/320 (6%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L+ P + IL AVSGG DS+ L   L   + D+   KI      V H +RE + DE + V
Sbjct: 12  QLIAPGSRILAAVSGGPDSVALAHILWRYIQDKQEQKITLVITHVHHGVREESDDEEKMV 71

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++     I   +  +               AARE RYA   E  +  N TL+ TAH   
Sbjct: 72  QNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLATAHHLG 131

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV  R  R     G+         +Y     + RP L   +EDI  +     + + 
Sbjct: 132 DQAETVLYRLLRGSGTAGLA-------GIYPQKGKLIRPLLTVTKEDILEYCRNEKLPYA 184

Query: 190 EDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            D SN +  + R ++R  +            + AL    +  +     +   V     ++
Sbjct: 185 LDHSNEEPIYVRNKIRLQLLPELQREYNPKIIEALGRTAEVLRWDEEYLEEEVQSAWKRW 244

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     + + + I  +   +L  L+R +A +  G+     ++ +E+VM   +      
Sbjct: 245 AILDTEQRVGLRRTIFELPKAILSRLIRRAATLVSGEPRGIAFQYVEQVMA-SQGQVGWS 303

Query: 302 VSIGRVVIDRRANFLWITRA 321
             +  + I      +W  RA
Sbjct: 304 QDLPGLNIGIDYQGVWFQRA 323


>gi|325287915|ref|YP_004263705.1| tRNA(Ile)-lysidine synthase [Cellulophaga lytica DSM 7489]
 gi|324323369|gb|ADY30834.1| tRNA(Ile)-lysidine synthase [Cellulophaga lytica DSM 7489]
          Length = 434

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 97/412 (23%), Positives = 169/412 (41%), Gaps = 44/412 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F + I++   F   L  P   LVA SGG DS+ L     ++        + FS    +  
Sbjct: 5   FKNHIKA--HFPLLLQRP--FLVACSGGVDSVVLAHLCAALQ-------LDFSIAHCNFK 53

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR   +  +  +V  +  +L+    V ++      +K +  +  AAR+ RY+  ++  K 
Sbjct: 54  LRDAASDADEEFVRQLALQLQKKIYVTNFNTVGYVAKNKVSIQMAARDLRYSWFAKLVKE 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            N   ++T H  DD LET  +   R     G  L G+           ++RP L   R++
Sbjct: 114 NNLETVLTGHQADDNLETFLINLSRGTGVGG--LLGIPSKTSA-----LARPLLPFTRDE 166

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAV 234
           I  F  Q NI W ED SN + ++ R R+R  +     +LH  +L+        ++  + +
Sbjct: 167 IEDFAKQNNIKWREDKSNKETKYLRNRIRHKIVPELKELHPTFLQNFNNTQAYLQETSVL 226

Query: 235 AM----LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           A     L+   L V    +I +S   L     L  YL  + ++         G+   + V
Sbjct: 227 AEDYIKLLKNKLFVRKNGVIEVSVSKLLTYKPLKTYLYALFSSY--------GFTEWQDV 278

Query: 291 --MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS 348
             +L   SGK+      R+V +R    L   +   +   L+   +ET  +  +  FQN+S
Sbjct: 279 ANLLTAMSGKQVLSRTHRLVKNRENLLLQELKEANSDVYLVNKDQETISYPIKLHFQNVS 338

Query: 349 DSLIQIGPQSYRKADVPS-GIPPIIAQRALSSM--PSKEGGKPLLAPFSRFM 397
           +  I I   +    D      P ++ +R    +  P  + GK  L+ F + +
Sbjct: 339 E--IGITNDTTIYVDKSKLKFPLVLRKREEGDVFYPFGQNGKKKLSKFYKDI 388


>gi|325204175|gb|ADY99628.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240355]
          Length = 426

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKICVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNVQGFELHH 295

Query: 312 RANFLWITRAVR 323
            A  L++ R  +
Sbjct: 296 YAGRLFVFRPEK 307


>gi|157147380|ref|YP_001454699.1| tRNA(Ile)-lysidine synthetase [Citrobacter koseri ATCC BAA-895]
 gi|157084585|gb|ABV14263.1| hypothetical protein CKO_03178 [Citrobacter koseri ATCC BAA-895]
          Length = 440

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 142/406 (34%), Gaps = 37/406 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           SL+    ILVA SGG DS  LL  L      +    +   AI + H L   A   V +  
Sbjct: 11  SLLPYRQILVAFSGGLDSTVLLHQLVQWREQQ--PDVTLRAIHIHHGLSSHADSWVTHCE 68

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            VC + ++   V   +      G+ A AR+ARYA  ++        +++TA   DDQ ET
Sbjct: 69  AVCQQWQVPLVVRRVQLQDEGLGIEAQARQARYAAFAQAL--HPGEVLVTAQHLDDQCET 126

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R     G+   G   +        + RP L   R  +  +  +  + W ED SN
Sbjct: 127 FLLALKRGSGPAGLSAMGERSSF---AGTQLIRPLLGETRAALEQWAKRYALRWIEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-- 252
            DD ++R  +R  V    L  L  +   F +   +     A        +    +     
Sbjct: 184 QDDVYDRNFLRLRV----LPLLQQRWPHFAEATARSAALCAEQERLLDELLAEDLAGCIT 239

Query: 253 SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIG 305
           +   L +   +     R +A     +      +P    +ER+       +     C+  G
Sbjct: 240 ADGALQLAPLMAMSGPRRAALLRRWLAAKHAPMPSRDGLERIWQEVALAREDAAPCLRFG 299

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              I R  + LW  ++V      ++       W       +L   L  +         +P
Sbjct: 300 EYDIRRYQSQLWWIKSVTGQSATVIP------WSSWQTPLSLPVGLGTVRLVPGDDLRMP 353

Query: 366 SGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
               P+  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 354 RADEPVSIRFKASGLLHIIGRNGGRKLKKIWQELGVPPWRRDTTPL 399


>gi|163938071|ref|YP_001642955.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4]
 gi|163860268|gb|ABY41327.1| tRNA(Ile)-lysidine synthetase [Bacillus weihenstephanensis KBAB4]
          Length = 476

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     
Sbjct: 1   MKDAFVEKVDDFVKQHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAH 57

Query: 58  VDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R   + +++++V  +C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGNESYEDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRSFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  +  +    DPSN  + + R R+R++V            +KFQ   V++  
Sbjct: 175 TKEEIVDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|229153842|ref|ZP_04281973.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342]
 gi|228629646|gb|EEK86342.1| tRNA(Ile)-lysidine synthase [Bacillus cereus ATCC 4342]
          Length = 480

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     VDH
Sbjct: 8   TFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V D+C  L +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++    A
Sbjct: 182 EIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKKENPQVHEKFQKFSMQMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|206977928|ref|ZP_03238815.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97]
 gi|222093833|ref|YP_002527882.1| cell cycle protein [Bacillus cereus Q1]
 gi|206743834|gb|EDZ55254.1| tRNA(Ile)-lysidine synthetase [Bacillus cereus H3081.97]
 gi|221237880|gb|ACM10590.1| cell cycle protein [Bacillus cereus Q1]
          Length = 476

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVKQHDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L +    +    S+ Q         AARE RYA +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCKGLEVICETIRINVSQYQQQYGMNAQVAARECRYAFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|257877908|ref|ZP_05657561.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257812074|gb|EEV40894.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 466

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 128/326 (39%), Gaps = 17/326 (5%)

Query: 6   IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           I++VR  + ++        L+AVS G DSM LL     +  +       F    V+H LR
Sbjct: 3   IQTVRGQLTAIDPEKKRRFLLAVSTGVDSMVLLQIFCQLFPEMQKEPC-FGVAHVNHQLR 61

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             +  E  ++   C    I      W+N  P+TG+ A+AR  RY   ++        +++
Sbjct: 62  PASAKEAAFLRQYCQERGIPFYERCWENP-PETGVEASARNFRYTFFADVMSQEGYDVLL 120

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DDQ+ET+ M+  R+   +  G  GM     +   + + RP L   +  I  +   
Sbjct: 121 TAHHSDDQVETMLMKMMREGRLRSAG--GMKQQQPFHTGI-LLRPLLTVSKAAIYDYAQA 177

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAM 236
           + I + ED SN +  + R R+R+ V           +  FQ L  +V             
Sbjct: 178 QQIPYFEDESNHEPLYLRNRLRQQVVPALKAENPQLLPHFQQLSEEVQFANQLIQQEQQQ 237

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLK 295
            +  ++      ++   Q +    S   ++               P   + + +++  L 
Sbjct: 238 WLSAFVQQQAACLVIDLQQLPTFSSAQRYFFYAGFLQQAEAFTKQPLNQKQLPQLLRLLD 297

Query: 296 SGK-RGCVSIGRVV-IDRRANFLWIT 319
             K +  +++ +   + R  + L + 
Sbjct: 298 EKKGQWQLALHKQWQLRRSYDQLLLE 323


>gi|47570187|ref|ZP_00240841.1| cell cycle protein mesJ [Bacillus cereus G9241]
 gi|47553131|gb|EAL11528.1| cell cycle protein mesJ [Bacillus cereus G9241]
          Length = 476

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  + +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  + +     
Sbjct: 1   MKDTFVEKVDDFVKQYDVLKERSTIVVGVSGGPDSLALLYYL---LEKRAAKQFEIVVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISE 112
           VDH  R + + +++++V D+C  L +    +    S+ Q         AARE RY  +  
Sbjct: 58  VDHMFRGDESHEDLQFVQDLCKGLGVICETIRINVSQYQQQYGMNAQVAARECRYVFLER 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L  
Sbjct: 118 IMKKYDARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGV 174

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +E+I  +  +  I    DPSN  + + R R+R++V            +KFQ   +++  
Sbjct: 175 TKEEIVDYCNKLKIIPRIDPSNKKEVYTRNRLRKYVLPHLKEENPQVHEKFQKFSMQMQE 234

Query: 233 AVAMLIP 239
             A L  
Sbjct: 235 DEAYLQE 241


>gi|331268350|ref|YP_004394842.1| cell cycle protein MesJ [Clostridium botulinum BKT015925]
 gi|329124900|gb|AEB74845.1| Cell cycle protein MesJ, putative [Clostridium botulinum BKT015925]
          Length = 467

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 24/307 (7%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + IE V   ++          ++VAVSGG DS+ LL  L+ +  +     I   A  ++H
Sbjct: 5   NLIEKVIHTIKQNNMFEVKDKVVVAVSGGPDSICLLHILYKLKEELG---ITLVAAHINH 61

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115
           CLR E A  +  YV   C  L I   V    V   +         A RE RY   SE   
Sbjct: 62  CLRGEEADKDEEYVRKFCENLNIECFVKKEDVHKISKDRGISCEMAGREVRYEFFSEVLN 121

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            + A  I  AH  +DQ ET+ MR  R     G GL G+        N+++ RP +   R+
Sbjct: 122 KVGANKIAVAHNANDQAETILMRMLR-----GTGLEGLVGIRAVRDNIFL-RPIIDITRD 175

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVN 231
           +I ++    N++   D +N ++ + R ++R  +           +   + +F D     N
Sbjct: 176 EIENYCDVNNLNPRIDKTNLENIYTRNKIRLELIPYIQKNFNSDVIEVLNRFSDTVKIDN 235

Query: 232 NAVAMLIPKYLTVHMRSI---IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
           + +  +  +    + +S    I +  ++ N    +L  ++R++     G +       + 
Sbjct: 236 DYLNKISLEKYNKYCKSEKDKIIMRAEVFNEHEAILTRIIRIALKDLKGNLHNFDKSHVY 295

Query: 289 RVMLFLK 295
            ++   K
Sbjct: 296 DIIDIQK 302


>gi|153008553|ref|YP_001369768.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum anthropi ATCC 49188]
 gi|166988061|sp|A6WY85|TILS_OCHA4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|151560441|gb|ABS13939.1| tRNA(Ile)-lysidine synthetase [Ochrobactrum anthropi ATCC 49188]
          Length = 456

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/451 (27%), Positives = 192/451 (42%), Gaps = 38/451 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M LSP    + F       A  ++ AVSGGSDS+GLL  +   ++       +  A++VD
Sbjct: 1   MGLSPSNISKLFEPFGFEQAKAVIAAVSGGSDSLGLLFLVRDYMAMLQNPP-RLIAVTVD 59

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H LR  +K E   V  +C +  I H ++ W  +KP +GL AAAR ARY L+ + A+ +  
Sbjct: 60  HQLRAESKAEAENVGLLCRQYGIEHRILVWDEAKPTSGLAAAARTARYRLLVQAARDVGG 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRR 174
             I+T HT DDQ+ET  MR +R    +  GL+ M      D +  + ++ + RP L   R
Sbjct: 120 AFIVTGHTQDDQIETFLMRKERSAHAEARGLAAMSLRSLLDGLGLEGSVELDRPLLSVSR 179

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKVNNA 233
           + +R  L  R I+W +DPSN +  +ER R+R  +  + D   +  ++ +    R + N A
Sbjct: 180 QTLRDELRGRGINWVDDPSNANTEYERPRIRHGIAAEADRQTVLDQIAEAGAARERDNAA 239

Query: 234 --VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPGYRSMERV 290
              A+  P  L       + +   +          L   + AAI GG+  LPG     R+
Sbjct: 240 LIAALGNPASLRADANGALLVDPQLYAALPGNARRLFSGLLAAIAGGRRFLPGDSERSRI 299

Query: 291 MLFLK-SGKRGCVSIGRVVIDRRANF--LWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
              L        +++   +I+R  +       R  RNLP L L P +  VWDGR++F N 
Sbjct: 300 ERVLSGDDDTHRLTVFGALIERGDSGSPHRFLREKRNLPKLHLEPGKPIVWDGRFRFLNE 359

Query: 348 SDSLIQIGPQSYRKADVPSGIPPI----IAQRALSSMPSKEGGKPL-------------- 389
                ++     ++         I      + AL   P+      L              
Sbjct: 360 GMMDFELAAPGRQELADFLKSQNIEIESRKREALLVSPALYREGRLFALLFLQDGEFQQD 419

Query: 390 ------LAPFSRFMTKFDLPVAYAFSISFGK 414
                  A F   +   D  +A A     G+
Sbjct: 420 IHIERHFAIFDHVLPGHDFDLARAVEARIGR 450


>gi|229513885|ref|ZP_04403347.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21]
 gi|229349066|gb|EEO14023.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TMA 21]
          Length = 440

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 147/382 (38%), Gaps = 27/382 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       IL+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY  ++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRALAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SII----AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRG 300
             I     +S  +L   S  +   L + A     ++ +P  +  ER+             
Sbjct: 238 KAITAEGGLSITVLAEGSEGMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVAQASEDANP 296

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG-P 356
            + +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  P
Sbjct: 297 KLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKLP 356

Query: 357 QSYRKADV---PSGIPPIIAQR 375
             + +  +   P G+      R
Sbjct: 357 DDFSQLWISFEPQGLEACPVGR 378


>gi|229009573|ref|ZP_04166800.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048]
 gi|229053910|ref|ZP_04195345.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603]
 gi|229131071|ref|ZP_04259984.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196]
 gi|229165052|ref|ZP_04292848.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621]
 gi|228618437|gb|EEK75466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH621]
 gi|228652408|gb|EEL08332.1| tRNA(Ile)-lysidine synthase [Bacillus cereus BDRD-ST196]
 gi|228721451|gb|EEL72971.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH603]
 gi|228751717|gb|EEM01516.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides DSM 2048]
          Length = 480

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 110/242 (45%), Gaps = 14/242 (5%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VEKVDDFVKQHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTI 117
           R   + +++++V  +C  L +    +    S+ Q         AARE RYA +    K  
Sbjct: 67  RGNESYEDLQFVQGLCKELGVICETLRINVSQYQQQYGMNAQVAARECRYAFLERIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRSFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +  +  +    DPSN  + + R R+R++V            +KFQ   V++    A L
Sbjct: 184 VDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQEDEAYL 243

Query: 238 IP 239
             
Sbjct: 244 QE 245


>gi|89892946|ref|YP_516433.1| hypothetical protein DSY0200 [Desulfitobacterium hafniense Y51]
 gi|89332394|dbj|BAE81989.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 472

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 21/320 (6%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L+ P + IL AVSGG DS+ L   L   + D+   KI      V H +RE + DE + V
Sbjct: 12  QLIAPGSRILAAVSGGPDSVALAHILWRYIQDKQEQKITLVITHVHHGVREESDDEEKMV 71

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++     I   +  +               AARE RYA   E  +  N TL+ TAH   
Sbjct: 72  QNMARDWEIPCLIHRFDSKNYAKSVGKSFQTAAREWRYACWQEDMRKENCTLLATAHHLG 131

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV  R  R     G+         +Y     + RP L   +EDI  +     + + 
Sbjct: 132 DQAETVLYRLLRGSGTAGLA-------GIYPQKGKLIRPLLTVTKEDILEYCRNEKLPYA 184

Query: 190 EDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            D SN +  + R ++R  +            + AL    +  +     +   V     ++
Sbjct: 185 LDHSNEEPVYVRNKIRLQLLPELQREYNPKIIEALGRTAEVLRWDEEYLEEEVQSAWKRW 244

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     + + + I  +   +L  L+R +A +  G+     ++ +E+VM   +      
Sbjct: 245 AILDTEQRVGLRRTIFELPKAILSRLIRRAATLVSGEPRGIAFQYVEQVMA-SQGQVGWS 303

Query: 302 VSIGRVVIDRRANFLWITRA 321
             +  + I      +W  RA
Sbjct: 304 QDLPGLNIGIDYQGVWFQRA 323


>gi|325140361|gb|EGC62883.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis CU385]
          Length = 445

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 26  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 82

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 83  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 256

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 257 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 315 YAGRLFVFR 323


>gi|126725520|ref|ZP_01741362.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150]
 gi|126704724|gb|EBA03815.1| PP-loop family protein [Rhodobacterales bacterium HTCC2150]
          Length = 419

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 96/389 (24%), Positives = 152/389 (39%), Gaps = 21/389 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VAVSGGSDSM LL+  ++   +          ++VDH LR  A+ E   V D CS L + 
Sbjct: 28  VAVSGGSDSMALLVLANAWAIENGHV---LYVVTVDHQLRPDARVEAETVGDFCSTLGLP 84

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H V++W     +      AR ARY L+   AK++    +   HT DDQ ET+ M   R  
Sbjct: 85  HQVLTWNGWVGRGNKAELARNARYDLMQVWAKSLRLNGLFLGHTEDDQAETLLMSIARKS 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G+             +L + RP L   R D+R  L + +ISW +DPSN D   ER++
Sbjct: 145 GVDGLSAM---RARRAHGDLVLMRPLLGFARGDLRQILTEGDISWADDPSNDDITSERIK 201

Query: 204 VRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           +R  + D     ID  AL       Q  +  +         K  T     I   +     
Sbjct: 202 MRHLLTDMAASGIDRSALAQVALNLQSAQSALAVVAHDAAKKMATFVGGEIHVATSAFFA 261

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
           +     F +L  S        + P  +++ +VM  +  G     ++   ++  R     I
Sbjct: 262 LPDETRFRILAHSLTWLASAQNRPRQKALLQVMDAI--GLGKIATLHGCIVYPRNEHFVI 319

Query: 319 TRAVRNLPTLILYPEETTVWDGRYQFQNL---SDSLIQIGPQSYRKADVPSGIPPIIAQR 375
            R    L      PE     DGR++ +       +L  +G      A         +++ 
Sbjct: 320 AREPSALDVCDTNPEMHF--DGRWRLEGPIKQGQTLSCLGESGL--AACRDWRESGMSRF 375

Query: 376 ALSSMPSKE-GGKPLLAPFSRFMTKFDLP 403
              + P+     + + AP      ++ L 
Sbjct: 376 GAMASPAIWENAQLIAAPMVLHCPEWQLI 404


>gi|147674336|ref|YP_001217758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395]
 gi|153817074|ref|ZP_01969741.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457]
 gi|227082366|ref|YP_002810917.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2]
 gi|229507683|ref|ZP_04397188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286]
 gi|262167735|ref|ZP_06035437.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27]
 gi|298500383|ref|ZP_07010188.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757]
 gi|172047611|sp|A5F623|TILS_VIBC3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|254789054|sp|C3LPP6|TILS_VIBCM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|126512342|gb|EAZ74936.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae NCTC 8457]
 gi|146316219|gb|ABQ20758.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395]
 gi|227010254|gb|ACP06466.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae M66-2]
 gi|227014138|gb|ACP10348.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae O395]
 gi|229355188|gb|EEO20109.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae BX 330286]
 gi|262023800|gb|EEY42499.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC27]
 gi|297541076|gb|EFH77130.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MAK 757]
          Length = 440

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 144/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       IL+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKILLALSGGVDSQVLLALLAR---GRDEFGWDVTAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + +  + + R  + L++    ++L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPEKDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P    +  V   P G+      R
Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378


>gi|325144442|gb|EGC66742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M01-240013]
          Length = 445

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 26  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 82

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 83  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 256

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 257 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 315 YAGRLFVFR 323


>gi|254671868|emb|CBA04090.1| cell cycle protein [Neisseria meningitidis alpha275]
          Length = 436

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L   I +           
Sbjct: 188 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWLCEEGSF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +            ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 248 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 305

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 306 YAGRLFVFR 314


>gi|153872260|ref|ZP_02001203.1| cell cycle protein MesJ [Beggiatoa sp. PS]
 gi|152071275|gb|EDN68798.1| cell cycle protein MesJ [Beggiatoa sp. PS]
          Length = 435

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 136/338 (40%), Gaps = 20/338 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  + +  +R  + +        VA SGG DS  LL AL  +  + ++   +  AI + H
Sbjct: 13  MVNTLLSHLRKILHAYPATQCFWVAYSGGLDSRVLLHALAQLRHNNTY--FQLRAIHIHH 70

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119
            L   A     +   VC  L IA  V+  K    P+  L A AR ARY  I++       
Sbjct: 71  GLHPKADQWATHCQQVCEALTIACEVIRVKVGTGPRESLEANARTARYDAIAQVIAP--D 128

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            ++ TA   DDQ ETV ++  R     G+        +      W+ RP L   R  +  
Sbjct: 129 DVVFTAQHADDQAETVLLQLLRGAGVAGLAAMPQVSRLA---QGWLVRPLLGYTRTQLHD 185

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAM 236
           + L+ +I W ED SN+D RF R  +R  +  +      ++   + +    + + N  V  
Sbjct: 186 YALKAHIHWIEDSSNSDTRFARNFLRHEIMPLLQQRWPSVSHVLSRVAHHQAQANELVQT 245

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFY---LLRVSAAICGGQISLPGYRSMERVM-- 291
           L  + LT+  +       D+L +    L     +LR      G  + LP    +  ++  
Sbjct: 246 LAQQDLTI-CQGPTQEQLDLLALSHLSLVRQRNVLRFWLKQQG--LPLPSTVQLAHILND 302

Query: 292 -LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328
            L  K+ ++  V      + R  + L+    + ++P  
Sbjct: 303 MLTAKADRQPVVHWPGAEVRRYRHHLFAMPNLPSVPKP 340


>gi|316985031|gb|EFV63984.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis H44/76]
          Length = 436

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 248 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 305

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 306 YAGRLFVFR 314


>gi|319410441|emb|CBY90801.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase;
           tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria
           meningitidis WUE 2594]
          Length = 436

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L   I +           
Sbjct: 188 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +            ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 248 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 305

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 306 YAGRLFVFR 314


>gi|296329569|ref|ZP_06872055.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305672766|ref|YP_003864437.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296153312|gb|EFG94175.1| tRNA-ile lysidine synthetase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411009|gb|ADM36127.1| tRNAile lysidine synthetase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 472

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 135/332 (40%), Gaps = 27/332 (8%)

Query: 6   IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++SV+ F       +  A I+V VSGG DSM LL ALH++    +       A  VDH  
Sbjct: 1   MKSVKDFFNKHNLTLKGATIIVGVSGGPDSMALLHALHTLCGRSA----NIIAAHVDHRF 56

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++++R+V   C   ++A       V+    +      AAAR+ RY    +     
Sbjct: 57  RGAESEEDMRFVQAYCKAEQLACETAQINVTAYAREKGLNKQAAARDCRYQFFEDIMLKH 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +  AH  DDQ+ET+ M+  +     G GL+GM     +     I RPFL   +E+I
Sbjct: 117 QADYLALAHHGDDQVETMLMKLAKGAL--GAGLAGMQPARRFGTG-RIIRPFLTITKEEI 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +  + ++S+  D SN  D + R R R+ V            K+FQ +   +      L
Sbjct: 174 LHYCRENSLSYRTDESNATDDYTRNRFRKTVLPFLKQESPDVHKRFQKVSEALTEDEQFL 233

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGYRSMERVM 291
                    + I + S   + I+S+ L  L     R    +    +   +P   S   + 
Sbjct: 234 QSLTKDEMNKVITSQSNTSVEINSSQLLALPMPLQRRGVQLILNYLYENVPSSFSAHHIQ 293

Query: 292 LFLKSGKRGC------VSIGRVVIDRRANFLW 317
            FL   ++G          G  V+      L+
Sbjct: 294 QFLDWAEKGGPSGVLDFPKGLKVVKSYQTCLF 325


>gi|15642240|ref|NP_231873.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|153820829|ref|ZP_01973496.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229512122|ref|ZP_04401601.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229519257|ref|ZP_04408700.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9]
 gi|229607187|ref|YP_002877835.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236]
 gi|254849373|ref|ZP_05238723.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10]
 gi|255747060|ref|ZP_05421005.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101]
 gi|262161395|ref|ZP_06030505.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1]
 gi|61217424|sp|Q9KPX0|TILS_VIBCH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|9656802|gb|AAF95386.1| mesJ protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|126521621|gb|EAZ78844.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229343946|gb|EEO08921.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC9]
 gi|229352087|gb|EEO17028.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae B33]
 gi|229369842|gb|ACQ60265.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MJ-1236]
 gi|254845078|gb|EET23492.1| tRNA(Ile)-lysidine synthase [Vibrio cholerae MO10]
 gi|255735462|gb|EET90862.1| tRNA(Ile)-lysidine synthetase [Vibrio cholera CIRS 101]
 gi|262028706|gb|EEY47360.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae INDRE 91/1]
          Length = 440

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 144/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       IL+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKILLALSGGVDSQVLLALLAR---GRDEFGWDVTAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             +Y    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQYCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + +  + + R  + L++    ++L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPEKDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P    +  V   P G+      R
Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378


>gi|254804970|ref|YP_003083191.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14]
 gi|254668512|emb|CBA05883.1| putative cell cycle protein MesJ [Neisseria meningitidis alpha14]
          Length = 436

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 112/309 (36%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L       SF      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGSFIP---DALHIHHGLSPRADDWADFCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L   I +           
Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +            ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 248 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIDRVLTEAKTGRWNLQGFELHH 305

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 306 YAGRLFVFR 314


>gi|77358707|ref|YP_338292.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|77358709|ref|YP_338291.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|218768194|ref|YP_002342706.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491]
 gi|61216742|sp|Q9JUE9|TILS_NEIMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|73919876|sp|Q4W568|TILS_NEIMB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|66731914|gb|AAY52148.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|66731931|gb|AAY52164.1| tRNA(Ile)-lysidine synthetase [Neisseria meningitidis MC58]
 gi|121052202|emb|CAM08525.1| hypothetical protein NMA1350 [Neisseria meningitidis Z2491]
 gi|325134335|gb|EGC56981.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M13399]
 gi|325200183|gb|ADY95638.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis H44/76]
 gi|325206037|gb|ADZ01490.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M04-240196]
          Length = 426

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 112/309 (36%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 296 YAGRLFVFR 304


>gi|261392546|emb|CAX50101.1| tRNA(Ile)-lysidine synthetase (tRNA(Ile)-lysidine synthase;
           tRNA(Ile)-2-lysyl-cytidine synthase) [Neisseria
           meningitidis 8013]
          Length = 426

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F     +A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---NALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L   I +           
Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +            ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 295

Query: 312 RANFLWITRAVR 323
            A  L++ R  +
Sbjct: 296 YAGRLFVFRQEK 307


>gi|325128268|gb|EGC51153.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis N1568]
          Length = 426

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L   I +           
Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +            ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 295

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 296 YAGRLFVFR 304


>gi|325136324|gb|EGC58932.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M0579]
          Length = 436

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L   I +           
Sbjct: 188 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +            ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 248 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 305

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 306 YAGRLFVFR 314


>gi|325208130|gb|ADZ03582.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis NZ-05/33]
          Length = 426

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 14/309 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L   I +           
Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCEEGSF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +            ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTVRWQAFSPRRKTHILRYF--LKENGIPMPNQNALADIARVLTEAKTGRWNLQGFELHH 295

Query: 312 RANFLWITR 320
            A  L++ R
Sbjct: 296 YAGRLFVFR 304


>gi|121726536|ref|ZP_01679785.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V52]
 gi|121630989|gb|EAX63368.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V52]
          Length = 440

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 145/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +L+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ+ET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQMETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRCALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P  + +  V   P G+      R
Sbjct: 356 PDDFGQLWVSFDPQGLEACPVGR 378


>gi|325132247|gb|EGC54941.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis M6190]
          Length = 436

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 248 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 305

Query: 312 RANFLWITRAVR 323
            A  L++ R  +
Sbjct: 306 YAGRLFVFRQEK 317


>gi|153825370|ref|ZP_01978037.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2]
 gi|149741054|gb|EDM55123.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-2]
          Length = 440

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       IL+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY  ++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEFVQLDVASGESIEKLAREARYRALASHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P    +  V   P G+      R
Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378


>gi|71281989|ref|YP_268314.1| tRNA(Ile)-lysidine synthetase [Colwellia psychrerythraea 34H]
 gi|71147729|gb|AAZ28202.1| tRNA(Ile)-lysidine synthetase [Colwellia psychrerythraea 34H]
          Length = 462

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 131/311 (42%), Gaps = 15/311 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL AL  +  ++     + +   V+H L   A+   +     C +L 
Sbjct: 24  LIVAYSGGIDSQVLLHALVQLKQNKIINN-EITVCHVNHGLSGNAERWQKLAEQECIKLS 82

Query: 82  IAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   V      SK Q  L A AR+ARY  +    +    ++++T H  DDQ ET  +  +
Sbjct: 83  VNLIVKRVNVRSKAQQSLEALARDARYNALKSLREKK--SVVLTGHHSDDQSETFLLALK 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG  LS M      D +L + RP L   R++I ++     +SW ED SN D  F+
Sbjct: 141 RGAGLKG--LSAMSVQTQLDQHL-LVRPLLNVARQEIENYAENHQLSWVEDESNLDTCFD 197

Query: 201 RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R  +R+ +  +      ++   + +     +     +  L  + LTV       +    L
Sbjct: 198 RNFIRQKIIPLLRERWPSINNTINRSASHCLAGQELLDELAEQDLTVCKTGDSGLHVSAL 257

Query: 258 -NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVVIDRRAN 314
             +       L+R   A  G    +P    + +V L L++   K   + +   V  R  N
Sbjct: 258 TTLSPARFNNLIRFFMAQQG--CLMPSTEQVNQVRLQLQADEDKSPQIKVAEQVFRRFKN 315

Query: 315 FLWITRAVRNL 325
            L++T    ++
Sbjct: 316 TLFLTPEYSDI 326


>gi|121634879|ref|YP_975124.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18]
 gi|120866585|emb|CAM10336.1| hypothetical protein NMC1080 [Neisseria meningitidis FAM18]
          Length = 445

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 26  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 82

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 83  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 256

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 257 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314

Query: 312 RANFLWITRAVR 323
            A  L++ R  +
Sbjct: 315 YAGRLFVFRQEK 326


>gi|89075403|ref|ZP_01161820.1| hypothetical cell cycle protein MesJ [Photobacterium sp. SKA34]
 gi|89048819|gb|EAR54389.1| hypothetical cell cycle protein MesJ [Photobacterium sp. SKA34]
          Length = 438

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 119/315 (37%), Gaps = 13/315 (4%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            R  +         ++A SGG DS  LL  +   ++     +    A+ V H L   A  
Sbjct: 12  CRQLLTHRPASKRFVLAFSGGLDSRVLLDLMARFITQN--PEYSCHAVYVHHGLSTNADI 69

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                        I   +   K  +  +  L  AAREARY ++++H       +++TA  
Sbjct: 70  WADKCVFWAKSAGICCDIERVKVLTGNRISLEQAAREARYNILAQHVNK--GDMLLTAQH 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ+ET  +  +R       GL+ M   + +   + + RP L  +R DI  + L   +S
Sbjct: 128 SDDQIETFLLALKRGSGP--AGLAAMPTILPFAKGMHL-RPLLNIKRSDIEQYGLDHKLS 184

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W ED SN D+R++R  +R  +    L   +  + K       +      L+ + L   + 
Sbjct: 185 WVEDESNQDERYDRNFIRHQITPR-LVERWPSIHKSVARSSALCGEQEALLAELLATQLA 243

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMERVM---LFLKSGKRGCVS 303
             I     +L          + +       Q + +P    +E++    +  K      + 
Sbjct: 244 QAIQPDGSLLLASDVSQRVGMALIRQWLKKQSVLMPSLAQLEQIWFNVVQAKEDANPKLC 303

Query: 304 IGRVVIDRRANFLWI 318
              V + R    L++
Sbjct: 304 WANVEVRRYQKKLYL 318


>gi|229083382|ref|ZP_04215732.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
 gi|228699918|gb|EEL52553.1| tRNA(Ile)-lysidine synthase [Bacillus cereus Rock3-44]
          Length = 480

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  F +    L   + I+V VSGG DS+ LL  L   L  R   K+K     VDH
Sbjct: 8   TFVEKVDEFAKRHDVLEEHSTIVVGVSGGPDSLALLYYL---LEKRKEAKLKIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V ++C  + +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESYEDLQFVENLCREIGVICETIRINVSQYQQQYGMNAQMAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A+ +   H  DDQ+ET+ MR  R    KG   +G+     +    ++ RP L   ++
Sbjct: 125 KYEASYVALGHHGDDQVETILMRLVRGSTSKGY--AGIAAKRPFHSG-YLIRPLLAVTKK 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  +  I+   DPSN  + + R R+R+ V            ++FQ   V +    A
Sbjct: 182 EINAYCKRIGITPRIDPSNEKEVYTRNRLRKHVLPYLKEENPHVHEQFQKFSVLMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|229528754|ref|ZP_04418144.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)]
 gi|229332528|gb|EEN98014.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 12129(1)]
          Length = 440

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 129/324 (39%), Gaps = 18/324 (5%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       IL+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKILLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           W  D SN D R+ER  +R  V  +      ++   +++  +L  +    +   + + L  
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPVLTERWPSISQAVQRSAELCAEQEALLQEFLAEALKK 238

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
            + +   +S  +L   S  +   L + A     ++ +P  +  ER+              
Sbjct: 239 AITAEGGLSIAVLAEGSEGMRRQL-IRAWFAHHRLQMPSRQHTERIWCEVALASEDANPK 297

Query: 302 VSIGRVVIDRRANFLWITRAVRNL 325
           + +  + + R  + L++    R+L
Sbjct: 298 LKLNHIEVRRFQHCLYLVPPERDL 321


>gi|183179458|ref|ZP_02957669.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-3]
 gi|183012869|gb|EDT88169.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae MZO-3]
          Length = 440

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 145/380 (38%), Gaps = 25/380 (6%)

Query: 12  FVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           FV+ L       +L+A+SGG DS  LL  L      R       +A+ V H L   A   
Sbjct: 8   FVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQW 64

Query: 70  VRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            ++    C  + +A  +   + +      +   AREARY  ++ H      TL++     
Sbjct: 65  AQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRALAPHVNAQ--TLLLLGQHA 122

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++W
Sbjct: 123 DDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLTW 179

Query: 189 CEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
             D SN D R+ER  +R  V  +      ++   +++  +L  +    +   + + L   
Sbjct: 180 VIDESNADIRYERNFLRHQVTPVLTERWPSISQAVQRSAELCAEQEALLQEFLAEALKKA 239

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCV 302
           + +   +S  +L   S  +   L + A     ++ +P  +  ER+              +
Sbjct: 240 ITAEGGLSIAVLAEGSEGMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVALASEDANPKL 298

Query: 303 SIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG-PQS 358
            +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  P  
Sbjct: 299 KLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKLPDD 358

Query: 359 YRKADV---PSGIPPIIAQR 375
             +  V   P G+      R
Sbjct: 359 PSQLWVSFEPQGLEACPVGR 378


>gi|327484760|gb|AEA79167.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae LMA3894-4]
          Length = 440

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 145/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       IL+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAGALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + + ++ + R  + L++    R+L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNKIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P    +  V   P G+      R
Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378


>gi|325138171|gb|EGC60742.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ES14902]
          Length = 426

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295

Query: 312 RANFLWITRAVR 323
            A  L++ R  +
Sbjct: 296 YAGRLFVFRQEK 307


>gi|222528655|ref|YP_002572537.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455502|gb|ACM59764.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor bescii DSM
           6725]
          Length = 456

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 28/339 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  +E V+  +     L     +L+  SGG DSM LL     +L  +    +  +   ++
Sbjct: 1   MEFLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDC---ILRLKDKYNLDITVAHLN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
           H LR  A D+ ++V ++C R  I         +K           A R ARY+   E A+
Sbjct: 58  HMLRPEADDDEKFVIEICKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEVAE 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +N   I+  H  +D +ET ++   R    +G+         +  +   ++RP +   RE
Sbjct: 118 ELNIDRILLGHNKNDVVETFFLNLFRGSGLEGLA-------SVPPVRDIVARPLINISRE 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227
           +I  +    N+ +  D +N   +++R  VR  +  +         L+ ++  ++  ++  
Sbjct: 171 EIEEYAKLNNVPFVVDKTNFSLKYKRNIVRNEILPLIKEKFGESVLNTIFRTIEIIREES 230

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            ++         +Y+       +   +   N+ + L   ++++        IS    + +
Sbjct: 231 DQIEALAQKYFQEYVQKEDAYYVFNIEKAKNLPAFLRRRIIKMILEYFNAPISYDILKEI 290

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326
           E +   L SGK+   +   +V++R+ + L   R     P
Sbjct: 291 EEL-ASLSSGKKKVYN--ELVVERQNDELVFYRKSEESP 326


>gi|313668289|ref|YP_004048573.1| hypothetical protein NLA_9780 [Neisseria lactamica ST-640]
 gi|313005751|emb|CBN87205.1| hypothetical protein NLA_9780 [Neisseria lactamica 020-06]
          Length = 445

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 111/307 (36%), Gaps = 14/307 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 26  QGLNEKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---EAVHIHHGLSPRADDWADFCQ 82

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 83  NYCDMLGVRLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M        N  I RP L   R+DI  +  +  +   ED SN
Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 256

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    + +P   ++  +   L   K G  ++    +  
Sbjct: 257 DTARWLTFSPRRKTHILRHF--LKENGVPVPNQNALADIARVLTEAKTGRWNVQGFELHH 314

Query: 312 RANFLWI 318
            A  L++
Sbjct: 315 YAGRLFV 321


>gi|325130238|gb|EGC53008.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis OX99.30304]
          Length = 426

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKICVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 178 SDTAYLRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNVQGFELHH 295

Query: 312 RANFLWITRAVR 323
            A  L++ R  +
Sbjct: 296 YAGRLFVFRPEK 307


>gi|229524245|ref|ZP_04413650.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae bv. albensis VL426]
 gi|229337826|gb|EEO02843.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae bv. albensis VL426]
          Length = 440

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 139/363 (38%), Gaps = 27/363 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +L+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETTVWD---GRYQFQNLSDSLIQI 354
             + +  + + R  + L++    R+L      L PE+  +     G  Q  + +   I++
Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLLLPQGLGHLQLTSKAGGNIKL 355

Query: 355 GPQ 357
              
Sbjct: 356 PDD 358


>gi|325198322|gb|ADY93778.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis G2136]
          Length = 426

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295

Query: 312 RANFLWITRAVR 323
            A  L++ R  +
Sbjct: 296 YAGRLFVFRQEK 307


>gi|325142381|gb|EGC64790.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis 961-5945]
          Length = 426

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 113/312 (36%), Gaps = 14/312 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDILALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEVVVQDCRWVCGAGYF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295

Query: 312 RANFLWITRAVR 323
            A  L++ R  +
Sbjct: 296 YAGRLFVFRQEK 307


>gi|254286449|ref|ZP_04961406.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae AM-19226]
 gi|150423398|gb|EDN15342.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae AM-19226]
          Length = 440

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +L+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDELGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTDRWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A     + +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAHHS--LPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + +  + + R  N L++    R+L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNHIEVRRFQNCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P    +  V   P G+      R
Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378


>gi|254508666|ref|ZP_05120781.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16]
 gi|219548423|gb|EED25433.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 16]
          Length = 434

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 148/380 (38%), Gaps = 33/380 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + I++A SGG DS  LL  L     +     +   A+ V H L   A +      +
Sbjct: 15  LAPRSRIVLAFSGGIDSRVLLSLLARYQQETHRPTL---AVHVHHGLSVNADEWANQCQE 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             ++  +   +   +       +   AR+ RY ++++H       +++T    DDQLET 
Sbjct: 72  WAAQSDVPFILEKVQLDASGKSIEECARDQRYKVLAQHVNEK--DILLTGQHGDDQLETF 129

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R    KG  LS M ++  +  N  + RP L+ RRE+I  +     ++W ED SN 
Sbjct: 130 LLALKRGSGPKG--LSAMAESKPF-SNGRLVRPLLKVRREEIEQYAQHHGLNWVEDESNQ 186

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--- 252
           D RF+R  +RR +  +       +   F     +     A        +    +  +   
Sbjct: 187 DTRFDRNYIRRHISPVIEE----RWPHFTQSVQRSAQLCAEQELLLDELLQDKLRLLVNS 242

Query: 253 -----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSI 304
                 Q + ++ + +   L+R+  A  G +  +P    ++++       K+     +++
Sbjct: 243 DGSLAIQGMADLSALMRARLIRMWLANAGQR--MPSRDHLDKIWHQVALAKADANPVLNL 300

Query: 305 GRVVIDRRANFLWITRA---VRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
               + R    L++  A   + +    +   EE  + D        + S   +   + ++
Sbjct: 301 ISAQVRRFNRRLYLVSAHEDISDWSQRLGLGEELELPDRLGHLTLQATSTGSLSLSALQQ 360

Query: 362 ADV-----PSGIPPIIAQRA 376
           A +     P G+    A+R 
Sbjct: 361 APLRIIFNPEGLSAHPAERG 380


>gi|119471144|ref|ZP_01613676.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Alteromonadales bacterium TW-7]
 gi|119445800|gb|EAW27082.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Alteromonadales bacterium TW-7]
          Length = 434

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/347 (23%), Positives = 148/347 (42%), Gaps = 28/347 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++  F +   +  +  VA+SGG DS+ LL  +H +  +    K+K SAI V+H L E A 
Sbjct: 13  ALEHFFKQQQF--NFTVALSGGVDSVVLLHVMHVLKQEM--PKLKVSAIYVNHGLSEYAN 68

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           D   +  ++C  L I  +      S + +T L A AREARY  + E +     ++I+   
Sbjct: 69  DWQAFCQNLCVELDIPFNTAQVTISPQTRTSLEAQAREARYKALDELSAPQ--SVILLGQ 126

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +DQ+ET  +R +R    KG+G   M             RP L   R DI  F    NI
Sbjct: 127 HLNDQIETFLLRLKRGSGLKGLG--AMQAMRELQSGRICYRPLLSITRSDIEHFATAFNI 184

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           +   D SNTD+RF+R  +R  V       +    K+F+        ++ +L  +   +  
Sbjct: 185 AHITDDSNTDERFDRNFLRARV-------VPELAKRFKGFEQCAGRSIELLQQQQALLDE 237

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS---------LPGYRSMERVM---LFL 294
            + I +SQ + +  +  +  ++  S       +          +P  + + +++   +  
Sbjct: 238 YTQIDLSQSLNDQQALCISQIIHYSDVRITNVVRAWLSLFTQVMPSQKQLSQIINQAINA 297

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR 341
           ++  +  + +    + R   +L+       +    L   E T+ DGR
Sbjct: 298 QADAKIQIDLVDGQVRRHQGYLYFVTQKNIVNDDELITHELTLNDGR 344


>gi|260431105|ref|ZP_05785076.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414933|gb|EEX08192.1| tRNA(Ile)-lysidine synthase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 417

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 99/383 (25%), Positives = 159/383 (41%), Gaps = 20/383 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             P+ + VAVSGGSDS  LL  +  +            A +VDH LR  +  E   V+ +
Sbjct: 19  PLPSRLGVAVSGGSDSTALLHLMSRIAEG---TDTNLFAATVDHGLRPESAAEAAKVAAL 75

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C  L I H ++ W        L   AR ARY L+ + A   +   I   HT DDQ ETV 
Sbjct: 76  CWELEIPHEILKWTGWDGTGNLQDQARRARYRLLRDWAHAQDIPAIALGHTADDQAETVL 135

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R       GLS M    ++D  + + RP L   R  +R +L+ + I W EDPSN +
Sbjct: 136 MRLGRAAGV--TGLSAMPVVRMFD-GVALVRPLLFATRSQLRDYLVAQAIDWMEDPSNQN 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP------KYLTVHMRSII 250
            RF+R++ R+ +    L  L +  +    +   + +A   L        + LTV     I
Sbjct: 193 IRFDRIKARQSLGQ--LAELGISAESLARVAENLGHANTALAQYTQETAQRLTVEQAGSI 250

Query: 251 AISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
            +     + +   L   ++        G    P   S++R +  + +G+    +IG   +
Sbjct: 251 RLDCAGFSGLPKELQRRIVIGIVRWIAGGDYPPRQASVDRTISAVSAGRP--TTIGGCAL 308

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA-DVPSGI 368
                F W  R +  +  L+  P     WD R+          Q+   + R    +P   
Sbjct: 309 VPDGEFAWFCRELNPVTDLVTSPG--LQWDRRWIVSGPDLPGAQVRALAERGLKQLPDWR 366

Query: 369 PPIIAQRALSSMPSKEGGKPLLA 391
              + + AL + P+   G+ L++
Sbjct: 367 SRGLPRAALLATPAVWVGETLVS 389


>gi|161870026|ref|YP_001599195.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442]
 gi|161595579|gb|ABX73239.1| hypothetical protein NMCC_1059 [Neisseria meningitidis 053442]
          Length = 436

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 114/312 (36%), Gaps = 14/312 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKRAGFVP---EALHIHHGLSPRADDWADFCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIA 251
           +D  + R R R  +       +    +   +    +   +A+L   I +       +   
Sbjct: 188 SDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCGAGYF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 248 DTARWLTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNVQGFELHH 305

Query: 312 RANFLWITRAVR 323
            A  L++ R  +
Sbjct: 306 YAGRLFVFRPEK 317


>gi|262192149|ref|ZP_06050310.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93]
 gi|262031998|gb|EEY50575.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae CT 5369-93]
          Length = 440

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 145/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +L+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVTAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQVVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P  + +  V   P G+      R
Sbjct: 356 PDDFSQLWVSFEPQGLEACPVGR 378


>gi|238897452|ref|YP_002923129.1| putative ATPase of the PP-loop superfamily [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|259533725|sp|C4K338|TILS_HAMD5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|229465207|gb|ACQ66981.1| putative ATPase of the PP-loop superfamily [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 457

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 145/373 (38%), Gaps = 39/373 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----H---CLRE 64
            +++L      LVA SGG DS  LL  L S+  D++  K+   AI       H      +
Sbjct: 12  LLKNLGKHHKFLVAFSGGLDSTVLLHGLLSL-RDQNHLKLNIRAIHTHEKLIHRPENWSK 70

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            A   + +    C + ++   VV  +      G+ AAAR  RY + S   K     +++T
Sbjct: 71  DADQRLTHCQSQCEQWKVPLEVVKMEVEPRGKGIEAAARTVRYQIFSNALKK--DEVLLT 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  +DQ ETV +  +R       GLSGM   +    +  + RP L   R  ++ + L++
Sbjct: 129 GHHQNDQCETVLLALKRGSGP--AGLSGMPLAMPLGQS-QLLRPQLSFSRHSLQLYALEK 185

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYL 242
            I W ED  N +DRF+R  +RR +    L  L  +   F +   +     A    +   L
Sbjct: 186 GILWMEDEDNQNDRFDRNFLRRHI----LPLLTARWPHFLESTSRSAALCAEQETLLDEL 241

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLK 295
                  +   +  L+I        ++ +A     +   ++ +P    + R+       K
Sbjct: 242 LSEQLCQLQSQEGTLSIQGLAACSEVKRNALLRRWLDSKKVPMPSRDQLARLWKEVALAK 301

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN-------LS 348
           S  +  +  G   I R    L++ ++ +             ++  ++ F         L 
Sbjct: 302 SDAQPYLQCGEYQIRRFREHLYLFKSSKKSQPC------PALFSIKWPFTPESENKLVLP 355

Query: 349 DSLIQIGPQSYRK 361
           D L ++    YR 
Sbjct: 356 DHLGELKCTPYRS 368


>gi|121586235|ref|ZP_01676025.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80]
 gi|153829935|ref|ZP_01982602.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39]
 gi|121549501|gb|EAX59527.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 2740-80]
 gi|148874570|gb|EDL72705.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 623-39]
          Length = 440

 Score =  232 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 144/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       IL+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADK 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P    +  V   P G+      R
Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378


>gi|85706708|ref|ZP_01037800.1| PP-loop family protein [Roseovarius sp. 217]
 gi|85668766|gb|EAQ23635.1| PP-loop family protein [Roseovarius sp. 217]
          Length = 419

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 148/381 (38%), Gaps = 16/381 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  + VAVSGGSDS+ LL  LH        G    +A++VDH LR  A  E   V+ +C
Sbjct: 20  PPPRLGVAVSGGSDSLALLHLLHDWQRA---GGPALAAVTVDHGLRPEAGAEAAEVAHIC 76

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +RL + H  + W+       L   AR ARY L+S+ A     T I   HT DD  ET  M
Sbjct: 77  ARLNVPHHTLHWQGCGGSGNLPDRARRARYTLMSDWAAAQGLTDIAIGHTQDDLAETFLM 136

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+              +   RP L   RE +R  L     +W +DP+N D 
Sbjct: 137 RLARGAGVDGLAAM---RPRWTQEGVTFHRPLLGLAREALRDHLRGLRQTWIDDPTNVDT 193

Query: 198 RFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            + R R R  +       +D   L        D R  +++           V    ++  
Sbjct: 194 SYLRPRAREILAALAPLGLDAATLAEVACNLSDARTALSHTTHAAARTLTRVEAGDLLID 253

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                N+   +   LL  +     G    P   ++  ++   ++G+   +  G +++  +
Sbjct: 254 HAGFANLPDEIARRLLHGALQWLTGAEYPPRGAALSALLAAARAGQTMTLQ-GGLLLPAK 312

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD-SLIQIGPQSYRKADV-PSGIPP 370
           +  L +TR    +  L      T +WD R+Q    SD + I+I           P     
Sbjct: 313 SGHLRLTREYDAVKDLRTPA--TALWDTRWQAIGPSDPADIEIAALGPAGLSACPDWRLS 370

Query: 371 IIAQRALSSMPSKEGGKPLLA 391
            +   +  + P    G  L+A
Sbjct: 371 GLPHASALATPGLWQGDSLIA 391


>gi|171463663|ref|YP_001797776.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193201|gb|ACB44162.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 438

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 164/419 (39%), Gaps = 51/419 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLI-ALHSVLSDRSFGKIKFSAISVDHCLRE 64
           + S R   +S      I VA SGG DS+ LL     +   + S  + +  A  + H L+ 
Sbjct: 1   MASSRKSQQSPNPGKRIAVAFSGGLDSVVLLDTVCKAHAKNLSQSQNQIFAFHIHHGLQR 60

Query: 65  TAKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
            A D + +   +  + +I     ++   NS+    + + AR  RY  +S+  +      +
Sbjct: 61  LADDWLIFCEKLAKKYKIHFDFRLLHLDNSQGLGNVESRARAGRYEALSDLCEEYGIEDL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           + AH  +DQ ETV ++  R     G+ G+    D   ++  + + RP L   R+++ ++ 
Sbjct: 121 LLAHHQNDQAETVLLQLLRGSGVAGLAGMPINRDMQRHNHRITLWRPLLNQSRQELEAYA 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRD----------IDLHALYLKMKKFQDLRVKVN 231
            +  + W EDPSN D ++ R  +R+ V            +++      + + Q L  ++ 
Sbjct: 181 KEHKLKWIEDPSNQDTKYRRNALRKKVIPVLEKIQPEALVNIARSAQLLGEAQSLLNRLA 240

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER-- 289
              A  I  +  +    +IA++Q  L   + +L Y L+        Q+++P    ++   
Sbjct: 241 QQDAKAIIYHDQLKAEPLIALAQKDLLAANNVLRYWLQTQ------QLAMPSQERLKAWW 294

Query: 290 -----------VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW 338
                       + +L   +R C+  G + +       W+ +A   LP           W
Sbjct: 295 RDLGKKIKADTKLEWLHDERRICLWRGMLQVGNLEEGRWVLKA---LPPNSKQLGFPADW 351

Query: 339 DGRYQFQN-------LSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL 390
               Q  N            IQI P++      P      + Q A   +P  E   PLL
Sbjct: 352 VKHAQENNQISLRDRRGSEKIQIKPKT------PRKTLKNLFQEA--DVPPWERQAPLL 402


>gi|266619822|ref|ZP_06112757.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479]
 gi|288868610|gb|EFD00909.1| tRNA(Ile)-lysidine synthase [Clostridium hathewayi DSM 13479]
          Length = 462

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 141/349 (40%), Gaps = 35/349 (10%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M    +ES+R F+     LV    +++ +SGG+DS+ LL+ LH + ++ +   I+  A+ 
Sbjct: 1   MHRKILESIREFIGENHMLVPGDRVIIGLSGGADSVSLLMILHELKNELN---IELFAVH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112
           V H LR E A  +  Y  ++   L +    V    ++           A R  RY ++ E
Sbjct: 58  VHHGLRGEEADRDSAYAQELSENLGVPFVCVHANVAEYARVNGMSEEEAGRHLRYRILEE 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                +A+ I  AH  DDQ ETV     R    KG+G           +   I RP L  
Sbjct: 118 QRLAHHASKIAVAHHADDQAETVLYNLFRGSGLKGIGGM-------KPVRDTIIRPLLSV 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF--------VRDIDLHALYLKMKKFQ 224
            R++I ++L ++ IS+CED +N+   + R R+R          + +  +  +    K   
Sbjct: 171 TRKEILAYLEEKEISYCEDSTNSGTDYIRNRLRHEIIPAVRKRINEGAVSNILQAAKTAA 230

Query: 225 DLRVKVNNAVAMLIPKYLTVHMR-----SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQ 278
                   A   ++ K+             + I+ +IL   DS +  Y++R         
Sbjct: 231 AADTYFEKAAKQILEKHGIREKTDEGGICSVGIAAEILKQEDSIVRQYVIRQMIGETYQS 290

Query: 279 ISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325
           +       +E    +LF   G+R  +  G   +      L I +  + +
Sbjct: 291 LKDITSVHVEAAEKLLFKPVGRRIQLPDGGCALRTYGE-LQIKKEGKTI 338


>gi|153854745|ref|ZP_01995979.1| hypothetical protein DORLON_01977 [Dorea longicatena DSM 13814]
 gi|149752652|gb|EDM62583.1| hypothetical protein DORLON_01977 [Dorea longicatena DSM 13814]
          Length = 473

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 136/339 (40%), Gaps = 40/339 (11%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E VR +V+    L    H++  VSGG+DS+ LL  L  +  +  FG    + + + H LR
Sbjct: 14  ERVRAYVKKYHMLQEKDHVIAGVSGGADSVCLLFMLVKLQKEMRFG---LTVVHIHHGLR 70

Query: 64  ETAKD-EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
             + D +  YV  +C +L +     H  V     + +  L  A R  R  +  E     N
Sbjct: 71  GESADVDENYVRALCEKLDVELLAFHEDVGRYAKEQKLTLEEAGRNVRRHIFEEVCHRKN 130

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I  AH  +D  ET+     R    KG+G        +  ++    RP L  RR++I 
Sbjct: 131 GTRIALAHHQNDNAETLLWNLSRGCGLKGIG-------GISPVDGKYIRPLLGVRRQEIE 183

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKV 230
            +L + NI +C D +N +D + R R+R  V            +  +   M++ + +   +
Sbjct: 184 EYLKENNIDYCTDETNLEDHYTRNRLRNHVIPYLEREINPRAVSHMADTMEQMRTVWAFM 243

Query: 231 NNAVAMLIPKYLT---VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
              V       +         ++ + +   +++ T+  +L+        G       + +
Sbjct: 244 EEEVEKCRKYCVKPKQDKADGVVILEEGFRSVNETVRTFLIHELLCETAG-----RKKDI 298

Query: 288 ERVMLFLKSGKRGCVSIGRVVI------DRRANFLWITR 320
           E++ + L        +  ++++      +R    +W+ +
Sbjct: 299 EQIHVKLVEELMEHQTGRKIMLPYEMTGERCYEGIWLHK 337


>gi|153213784|ref|ZP_01948992.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 1587]
 gi|124115708|gb|EAY34528.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae 1587]
          Length = 440

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 147/382 (38%), Gaps = 27/382 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            F + L       +L+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFAQQLARYPFRKLLLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAGALK 237

Query: 248 SII----AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRG 300
             I     +S   L   S  +   L + A     ++ +P  +  ER+             
Sbjct: 238 KAITAEGGLSIAALAEGSEGMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVALASEDANP 296

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG-P 356
            + +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  P
Sbjct: 297 KLKLNHIEVRRFQHCLYLVPPERDLSGWRCALVPEQRLPLPQGLGHLQLTSKAGGNIKLP 356

Query: 357 QSYRKADV---PSGIPPIIAQR 375
             +R+  V   P G+      R
Sbjct: 357 DDFRQLWVSFDPQGLEACPVGR 378


>gi|311028999|ref|ZP_07707089.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13]
 gi|311032268|ref|ZP_07710358.1| tRNA(Ile)-lysidine synthetase [Bacillus sp. m3-13]
          Length = 473

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 137/331 (41%), Gaps = 27/331 (8%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E+V  F+     L   + ++V VSGG+DSMGLL  L S+   +    +K     VDH  R
Sbjct: 3   ETVSTFIDKFDLLPSHSTVVVGVSGGADSMGLLHYLDSIKEAKR---LKLVVAHVDHMFR 59

Query: 64  -ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
              +++++ +V + C +  I        VS   ++ +  +  AARE RYA   +  +   
Sbjct: 60  GAESEEDMDFVKEQCEKREILFEAEQIDVSAYQNEKKLSVQVAARECRYAFYEKVMRKYR 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A ++   H  DDQ+ET+ MR  R  +    G +G+     +   + I RPFL   + +I 
Sbjct: 120 ADVLALGHHADDQVETILMRLGRGSSM--SGHAGILPKRTFGAGV-IVRPFLTVTKSEIM 176

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV- 234
            +L    + +  DPSN  D + R R+R  +  I   +   L+ + + F +   +    + 
Sbjct: 177 EYLKANEVPYRHDPSNDKDAYRRNRLRHHILPILKEEFPGLHQRFQAFSEQIQESEQYIG 236

Query: 235 ----AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME-- 288
                  I    +     ++   + +L +   L    +++           P   S+   
Sbjct: 237 ALMEKEWIDVIKSKENDRVVLDRKPLLFMAKPLQRRGIQLILNYLYNNEIPPSLSSIHID 296

Query: 289 RVMLFLKSGK-RGCVSI--GRVVIDRRANFL 316
            ++  L+S    G +    G  VI      +
Sbjct: 297 NLLSLLESEHPSGRLHFPNGLQVIKSYNECI 327


>gi|297580884|ref|ZP_06942809.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC385]
 gi|297534710|gb|EFH73546.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae RC385]
          Length = 440

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 144/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +L+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P    +  V   P G+      R
Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378


>gi|210613792|ref|ZP_03289906.1| hypothetical protein CLONEX_02117 [Clostridium nexile DSM 1787]
 gi|210151001|gb|EEA82009.1| hypothetical protein CLONEX_02117 [Clostridium nexile DSM 1787]
          Length = 476

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 111/284 (39%), Gaps = 26/284 (9%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E +R +V     +     I+V VSGG+DS+ LL  L  +  +  F   +   + V+H L
Sbjct: 5   LEKIRRYVEKWHMIENGDKIIVGVSGGADSICLLFVLIQLQKEIPF---ELVCVHVNHGL 61

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   A  +  YV  +C +  +   +    V+    K +  L  A RE R     +  K  
Sbjct: 62  RGIDADADEMYVKKMCEKHCVPCEIYREDVALIAKKRKQSLEEAGREVRREAFVKTLKRY 121

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             T I  AH  +D  ET  M   R    KG+G        +  +N  + RP L   R ++
Sbjct: 122 GGTKIALAHHQNDNAETFLMNVARGAGLKGLG-------GIRPVNGNVIRPLLAVERGEV 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH--------ALYLKMKKFQDLRVK 229
             +L +  I++C D +N  D + R R+R  +               +   M++ +++   
Sbjct: 175 EKYLEEEGIAFCVDETNKSDAYMRNRIRNHILPYFEEQVNKRTVTHINETMERLREIEGF 234

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273
           +     +   +         + +  +   I   +  ++L+    
Sbjct: 235 LEEQTEISWRQCTRTEETGTVILQAEFQQIPHVIQSFVLKKVLW 278


>gi|229522189|ref|ZP_04411606.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TM 11079-80]
 gi|229341114|gb|EEO06119.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae TM 11079-80]
          Length = 440

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 146/381 (38%), Gaps = 25/381 (6%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +L+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLSRYPFRKLLLALSGGVDSQVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           W  D SN D R+ER  +R  V  +      ++   +++  +L  +    +   + + L  
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPVLTDRWPSIRQAVQRSAELCAEQEALLQEFLAEALKK 238

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
            + +   +S  +L   S  +   L + A     ++ +P  +  ER+              
Sbjct: 239 AITAEGGLSIAVLAEGSEGMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVALASEDANPK 297

Query: 302 VSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG-PQ 357
           + +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  P 
Sbjct: 298 LKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKLPD 357

Query: 358 SYRKADV---PSGIPPIIAQR 375
              +  V   P G+      R
Sbjct: 358 DPSQLWVSFEPQGLEACPVGR 378


>gi|254225768|ref|ZP_04919373.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51]
 gi|125621674|gb|EAZ50003.1| tRNA(Ile)-lysidine synthetase [Vibrio cholerae V51]
          Length = 440

 Score =  232 bits (592), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 143/383 (37%), Gaps = 29/383 (7%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            F + L       IL+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFAQQLARYPFRKILLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   + +      +   AREARY +++ H      TL++    
Sbjct: 64  WAQHCQRCCREVGMACQIEYVQLDVASGESIEKLAREARYRVLAPHVNAQ--TLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKGL---AAMAAYAPFAEGHLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  V  + L   +  +++      ++      L+ ++L   ++
Sbjct: 179 WVIDESNADIRYERNFLRHQVTPV-LTERWPSIRQAVQRSAELCAEQEALLQEFLAEALK 237

Query: 248 SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +      +   L+R   A    ++ +P  +  ER+            
Sbjct: 238 KAITAEGGLSIAVLAEGSEGMRRQLIRAWFAH--HRLPMPSRQHTERIWCEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETT-VWDGRYQFQNLSDSLIQIG- 355
             + +  + + R  + L++    R+L      L PE+   +  G    Q  S +   I  
Sbjct: 296 PKLKLNHIEVRRFQHCLYLVPPERDLSGWRSALVPEQRLPLPQGLGHLQLTSKAGGNIKL 355

Query: 356 PQSYRKADV---PSGIPPIIAQR 375
           P    +  V   P G+      R
Sbjct: 356 PDDPSQLWVSFEPQGLEACPVGR 378


>gi|88857960|ref|ZP_01132602.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Pseudoalteromonas tunicata D2]
 gi|88819577|gb|EAR29390.1| putative lysidine forming enzyme, modifying isoleucine tRNA
           decoding AUA [Pseudoalteromonas tunicata D2]
          Length = 428

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 145/341 (42%), Gaps = 19/341 (5%)

Query: 10  RFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
             F + +      L VA+SGG DS+ LL  + +  +      +K  A+ V+H +   A  
Sbjct: 8   HQFAKQIPPNVKTLTVALSGGVDSVVLLHLVATYQALN--PDVKVQAVHVNHGISPHAHA 65

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
              +   +C+ L I  + +S   + K +  L A ARE RY  +    +     +I+    
Sbjct: 66  WQDFCQRLCAELTIPFNAISVTIDKKNRQSLEAVARELRYQALVSVTQVQ--DVILLGQH 123

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ+ET +++ +R       GLS M +T  ++  + + RP L   R  I +F  Q N+S
Sbjct: 124 QDDQVETFFLQLKRGSGL--SGLSAMANTSEFEGRI-LVRPLLETSRASIEAFCQQFNLS 180

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
             ED SN+D +++R  +R  +   +L++ +    +       +      LI +   +  +
Sbjct: 181 HIEDESNSDVKYDRNYLRHQILP-ELNSRFAGFNQCVARSASLLREQQTLINEIAELDHQ 239

Query: 248 SIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRG 300
           S+   SQ     +L +       +LR   A+   +  +P Y  +  ++  L   K+    
Sbjct: 240 SVALGSQLQILKLLALSDIRRRNVLRYWLAL--HRCLMPSYAVLAELVSQLQSEKADANL 297

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR 341
            + +    + +    L+I +    L    +   +  + DGR
Sbjct: 298 VIKLSAGKLRQYNQLLYIVKDQVKLDDCKVDSNQLLLADGR 338


>gi|257868303|ref|ZP_05647956.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874424|ref|ZP_05654077.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257802417|gb|EEV31289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808588|gb|EEV37410.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 466

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 128/326 (39%), Gaps = 17/326 (5%)

Query: 6   IESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           I++VR  + ++        L+AVS G DSM LL     +  +       F    V+H LR
Sbjct: 3   IQTVRGQLTAIDPDKNRRFLLAVSTGVDSMVLLQIFCQLFPEMQKEPC-FGVAHVNHQLR 61

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             +  E  ++   C    I      W+N  P+TG+ A+AR+ RY   ++        +++
Sbjct: 62  PASAKEAAFLRQYCQERGIPFYERCWENP-PETGVEASARDFRYTFFADVMSQEGYDVLL 120

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DDQ+ET+ M+  R+   +  G  GM     +   + + RP L   +  I  +   
Sbjct: 121 TAHHSDDQVETMLMKMMREGRLRSAG--GMQQQQPFHTGV-LLRPLLTVSKAAIYDYAQA 177

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAM 236
           + I + ED SN +  + R R+R+ V           +  FQ L  +V             
Sbjct: 178 QQIPYFEDESNHEPLYLRNRLRQQVVPALKAENPQLLPHFQQLSEEVQFANQLIQQEQQQ 237

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLK 295
            +  ++      ++   Q +        ++               P   + + +V+  L 
Sbjct: 238 WLSAFVQQQAARLVIDLQQLPTFSPAQRYFFYAGFLQQAEAFTKQPLNQKQLPQVLRLLD 297

Query: 296 SGK-RGCVSIGRVV-IDRRANFLWIT 319
             K +  +++ +   + R  + L + 
Sbjct: 298 EKKGQWQLALHKQWQLRRSYDQLLLE 323


>gi|90413546|ref|ZP_01221537.1| hypothetical cell cycle protein MesJ [Photobacterium profundum
           3TCK]
 gi|90325478|gb|EAS41961.1| hypothetical cell cycle protein MesJ [Photobacterium profundum
           3TCK]
          Length = 439

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 126/312 (40%), Gaps = 17/312 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             ++A+SGG DS  LL  +   +  R   + +  A+ V H L   A              
Sbjct: 19  RFVIALSGGLDSRVLLHLMGRFI--RDNPQYQCDAVHVHHGLSNNADKWALQCQQWAFDE 76

Query: 81  RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +I   +         +  +   ARE RY  +S+H +  +   ++TA   DDQLET  +  
Sbjct: 77  QITCHIEHVTLVLGNRISVEQQAREQRYLALSKHIQQDDC--LLTAQHADDQLETFLLAL 134

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R       GL+ M ++  + +   + RP L+  R+ I  + +   + W ED SN D R+
Sbjct: 135 KRGSGP--AGLASMPESTTFGIGYHL-RPLLQVIRQSITDYGITHQLEWVEDESNQDQRY 191

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
           +R  +R  +  + LH  +  ++K       +      L+ + L  H+   + + Q +  +
Sbjct: 192 DRNFLRHQITPL-LHQRWPGIRKAVSRSAALCGEQEALLNELLASHLLKALHVDQSLKIV 250

Query: 260 D---STLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRA 313
           +     +   L+R   ++    + +P    ++++       +      V      I R  
Sbjct: 251 ELGSERIGKQLIRQWLSLFT--VLMPSQAQLQQIWQSVVLAQDDANPQVCWDNHQIRRYK 308

Query: 314 NFLWITRAVRNL 325
             L++ +   ++
Sbjct: 309 QRLYVVKQWADI 320


>gi|160872844|ref|ZP_02062976.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella
           grylli]
 gi|159121643|gb|EDP46981.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Rickettsiella
           grylli]
          Length = 458

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 132/326 (40%), Gaps = 22/326 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF    E + F ++     A   +A SGG DS  LL AL  +L        +  AI ++H
Sbjct: 1   MF--THEKLAFLLKQYPVSACFWIAYSGGLDSHVLLYALSQLLPTE-----RLRAIHINH 53

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINA 119
            L   +    +     C +L I   +V+     K    L A+ REARY  I +  K    
Sbjct: 54  GLHIHSDKWAKICRHACEKLTIDCEIVTLDIRPKTGESLEASLREARYHAIEK--KIPAG 111

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++TAH  +DQ ET  ++  R    KG  L  M        N+++ RP L   R+++ +
Sbjct: 112 NFLLTAHHRNDQAETFLLQLFRGAGLKG--LISMPFCRPLTNNVYLMRPLLNFTRQELYA 169

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML-- 237
           +    +++W ED SN + RF R  +R  V            K        +  A A+L  
Sbjct: 170 YAQTHHLTWIEDDSNKNQRFSRNFIRHQVLPRIQQRWPQAHKTIARSAANLAEAHALLDE 229

Query: 238 --IPKYLTVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
                +  +      +I     + + +     +LR      G   SLP  + ++++ + L
Sbjct: 230 IAEQDWNNIQGPEWHSIMISRWMTLSAKRQINVLRYGLKRHG---SLPSQKQLKQIDILL 286

Query: 295 KS--GKRGCVSIGRVVIDRRANFLWI 318
           K        VS G V + R  ++L+ 
Sbjct: 287 KRRVNTTFQVSWGNVQLRRYRDYLYF 312


>gi|330445162|ref|ZP_08308814.1| hypothetical cell cycle protein MesJ [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489353|dbj|GAA03311.1| hypothetical cell cycle protein MesJ [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 434

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 122/324 (37%), Gaps = 18/324 (5%)

Query: 12  FVRSLV-----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           F R L+          ++A SGG DS  LL  +   ++   +      A+ V H L + A
Sbjct: 6   FSRQLLTTHNASSKRFVLAFSGGLDSRVLLDLIARFIAQ--YPAYSCHAVYVHHGLSKNA 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                       +  I+  V         +  L  AAREARY  +++H +      ++TA
Sbjct: 64  DVWAEKCLAWTKQSGISCDVERVMVETGNRISLEQAAREARYNALAKHVQQ--GDTLITA 121

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ+ET  +  +R       GL+ M   + +     + RP L   R +I  +     
Sbjct: 122 QHSDDQIETFLLALKRGSGP--AGLASMPVILPFAKGTHL-RPLLNVTRAEIEQYGKAHQ 178

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           + W ED SN D+R++R  +R  +    L   +  + K       +      L+ + L+  
Sbjct: 179 LEWVEDESNQDERYDRNFIRHQITPR-LVERWSGIHKAVARSSALCGEQEALLEELLSTQ 237

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMERVM---LFLKSGKRGC 301
           +         +L  D T     + +       Q + +P    +E++    +  K      
Sbjct: 238 LAQATQQDGSLLLADDTTQRVGMALIRQWLKRQKVVMPSLAQLEQIWFNVVLAKQDANPK 297

Query: 302 VSIGRVVIDRRANFLWITRAVRNL 325
           +    V + R    L++ +   ++
Sbjct: 298 LCWSGVEVRRSQGKLYLLQQWSDI 321


>gi|228989271|ref|ZP_04149264.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442]
 gi|228770481|gb|EEM19052.1| tRNA(Ile)-lysidine synthase [Bacillus pseudomycoides DSM 12442]
          Length = 480

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  F +    L   + I+V VSGG DS+ LL  L   L  R   K+K     VDH
Sbjct: 8   TFVEKVDEFAKQHDVLEKHSTIVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V ++C ++ +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESYEDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +    ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQMETILMRLVRGSTPKGY--AGIAVKRPFHSG-YVIRPLLAVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  +  ++   DPSN  + + R R+R++V            ++FQ+  + +    A
Sbjct: 182 EINAYCKRLGVTPRMDPSNEKEVYTRNRLRKYVLPYLKEENPHVHERFQNFSMLMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|229015466|ref|ZP_04172466.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273]
 gi|228745824|gb|EEL95826.1| tRNA(Ile)-lysidine synthase [Bacillus cereus AH1273]
          Length = 480

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 14/242 (5%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  V  FV+    L   + I+V VSGG DS+ LL  L   L  R+  +++     VDH  
Sbjct: 10  VGKVDDFVKRHDVLKKHSTIVVGVSGGPDSLALLYYL---LEKRAEKQLEIVVAHVDHMF 66

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTI 117
           R   + +++++V  +C  L +    +    S+ Q         AARE RYA +    K  
Sbjct: 67  RGNESHEDLQFVQGICKELGVICETIRINVSQYQQQYGMNAQVAARECRYAFLETIMKKY 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +   H  DDQ+ET+ MR  R    KG   +G+     +  N ++ RP L   +E+I
Sbjct: 127 DARYVALGHHGDDQVETILMRLVRGSTPKGY--AGIAVKRPFH-NGYLIRPLLGVTKEEI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +  +  +    DPSN  + + R R+R++V            +KFQ   V++    A L
Sbjct: 184 VDYCNKLKVIPRIDPSNKKEVYTRNRLRKYVLPYLKEENPQMHEKFQKFSVQMQEDEAYL 243

Query: 238 IP 239
             
Sbjct: 244 QE 245


>gi|325568176|ref|ZP_08144617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158377|gb|EGC70528.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus casseliflavus ATCC 12755]
          Length = 467

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 132/326 (40%), Gaps = 17/326 (5%)

Query: 6   IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           I++VR  + ++        L+AVS G DSM LL     +  +    ++ F    V+H LR
Sbjct: 4   IQTVRGQLTAIDPEKKRRFLLAVSTGVDSMVLLQVFCQLFPEMQKEQV-FGVAHVNHQLR 62

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             + +E  ++   C    I      W+N  P+TG+ A+AR+ RY   ++        +++
Sbjct: 63  PASAEEAAFLRQYCQERGIPFYERCWENP-PETGIEASARDFRYTFFADVMSREGYDVLL 121

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DDQ+ET+ M+  R+   +  G  GM     +   + + RP L   +  I  +   
Sbjct: 122 TAHHSDDQVETMLMKMMREGRLQSAG--GMQQQQPFHAGI-LLRPLLSVSKTAIYDYAQV 178

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAM 236
           + I + ED SN +  + R R+R+ V           +  FQ L V++             
Sbjct: 179 QQIPYFEDESNHEPLYLRNRLRQQVVPALKAENPQLLPHFQQLSVEMQFANQLIQQEQQQ 238

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLK 295
            +  ++      ++   Q +        ++               P   + + +++  L 
Sbjct: 239 WLSAFVQQQATRLVIDLQQLPTFSPAQRYFFYAGFLQQAEAFTKQPLNQKQLPQLLRLLD 298

Query: 296 SGK-RGCVSIGRVV-IDRRANFLWIT 319
             K +  +++ +   + R  + L + 
Sbjct: 299 EKKGQWQLALHKQWQLRRSYDQLLLE 324


>gi|332290166|ref|YP_004421018.1| hypothetical protein UMN179_02108 [Gallibacterium anatis UMN179]
 gi|330433062|gb|AEC18121.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
          Length = 431

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 132/329 (40%), Gaps = 26/329 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           ++ +     L+ +SGG DS  LL     +        +KF AI + H +   A   + + 
Sbjct: 16  QNALKNKAFLIGLSGGVDSTVLLHLFVRLAERM---PLKFRAIHIHHGISPNADHWLNHC 72

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +C +  +  S    +  + Q  + A AR+ RY  I +H    +  +++TAH  DDQ E
Sbjct: 73  RQLCQQFNVPFSFEKVQLQQ-QRNIEAQARQVRYQAIQQHL--NHNEMLVTAHHLDDQSE 129

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R    KG+       T+    ++ I RP L   R  +  +L +  ++   D S
Sbjct: 130 TFLLALKRGSGVKGLAAM---PTLSRLFSVPIFRPLLSVTRRQLEQYLAENQLTAIFDES 186

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR--SIIA 251
           N D R+ER  +R  V    L  L  +        V+     A        +         
Sbjct: 187 NDDLRYERNFLRHQV----LPLLRQRWATIDQAIVRSAQHCAEQEQLLEELLQPIFQQHL 242

Query: 252 ISQDILNIDS------TLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCV 302
           +  + LN+            YLLR   A    Q  +P  + ++ ++   +  K+ ++  +
Sbjct: 243 MQDNSLNLKGFYDYSLRKQRYLLRYWFAHL--QQPMPSQKQLQILLDEVIGAKNDRQPEL 300

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILY 331
            + + V+ R    L++T   ++L  + L 
Sbjct: 301 QLNQKVVRRYQQQLYLTPIYQDLRAIKLP 329


>gi|146276617|ref|YP_001166776.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554858|gb|ABP69471.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sphaeroides ATCC 17025]
          Length = 412

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 156/381 (40%), Gaps = 26/381 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +AVSGG DSM LL                   ++VDH LR  A  E   V  VC+RL 
Sbjct: 19  LGLAVSGGGDSMALLHLAAEAGIAARA-------VTVDHGLRPEAAAEALEVGRVCTRLG 71

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H ++ W+    +  LM  AR AR  LISE A+      +   HT DD  ET  MR  R
Sbjct: 72  VPHDILRWEGWDGRGNLMDQARRARLRLISEWARGAGLDAVALGHTRDDVAETFLMRLAR 131

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+              +   RP L   RE++R  L +R  +W EDPSN +  F+R
Sbjct: 132 GAGVDGLAAM---RAERRAEGMLWLRPLLGIGREELREELRRRGAAWFEDPSNENRAFDR 188

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           VRVR+ ++ +         L        ++R  ++  +       + V  R  + ++  +
Sbjct: 189 VRVRQAMQGLAGLGLGPERLAEVAGHLAEVRAALDAQLHEAARTLVRVD-RGDVLMAPGV 247

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L++   +L  LLR +          P   ++ R+M  L+ GK   +   R+V  R  + L
Sbjct: 248 LDLPDEILRRLLRGAVQWVASAEYGPRGPALARLMRDLRQGKGRTLHGCRLVWRR--DGL 305

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV------PSGIPP 370
            I R  + +  L        +WDGR++ Q      I   P   R          P     
Sbjct: 306 RIGREWQAVRDLTAPVG--ALWDGRWRLQGPPQEDISDQPLEIRALGANGLDRCPGWRAT 363

Query: 371 IIAQRALSSMPSKEGGKPLLA 391
            + + +L + P    G  LLA
Sbjct: 364 NMPRASLLASPGVWRGPDLLA 384


>gi|212636261|ref|YP_002312786.1| cell cycle protein MesJ [Shewanella piezotolerans WP3]
 gi|212557745|gb|ACJ30199.1| Cell cycle protein MesJ [Shewanella piezotolerans WP3]
          Length = 452

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 133/318 (41%), Gaps = 18/318 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             P  I++A SGG DS  L   L      +   + +   + V H L + A D  ++    
Sbjct: 21  QKPRKIVLAYSGGVDSEILAQGLSLFAKQQPQFEYQL--VHVHHGLSDNADDWAKHCQAQ 78

Query: 77  CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +  ++  +V   + +  P+  + A AR  RY  +   A+   A ++MTAH  DDQLET+
Sbjct: 79  AALYKLPCTVARVEVTIAPRVSIEAQARSVRYQAL--LAQMEAADILMTAHHQDDQLETI 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R    KG  LS M     +D N W+ RP L   + ++ ++ ++  IS  +D SN 
Sbjct: 137 LLALKRGLGPKG--LSAMGKVQSFDKNKWLIRPLLDISKSEVEAYAMKHQISHIQDESNF 194

Query: 196 DDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL--TVHMRSII 250
           D++++R  +R+ +         A+     +  +L     + V   +   L     +    
Sbjct: 195 DEKYDRNFLRQSIIPSLKQRWSAIAATASRSAELCAMQQSVVDEEMAARLPSIQRLEGEE 254

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307
           ++ +     + +  +  L +   +     + P     E +   +L  K+     + +  V
Sbjct: 255 SVIELAALAEHSKAWQALLLRGQMDQLGFAPPSKVQAEEILSQLLDAKADANIEIKLADV 314

Query: 308 VIDRRAN---FLWITRAV 322
           VI R      FL +T+  
Sbjct: 315 VIKRYKGAGYFLALTKEA 332


>gi|229003073|ref|ZP_04160926.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4]
 gi|228758176|gb|EEM07368.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock1-4]
          Length = 283

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  F +    L   + I+V VSGG DS+ LL  L   L  R   K+K     VDH
Sbjct: 8   TFVEKVDKFAKQHDVLEEHSTIVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V ++C ++ +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESYEDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +    ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQMETILMRLVRGSTPKGY--AGIAVKRPFHSG-YVIRPLLAVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  +  ++   DPSN  + + R R+R++V            ++FQ+  + +    A
Sbjct: 182 EINAYCKRLGVTPRMDPSNEKEVYTRNRLRKYVLPYLKEENPHVHERFQNFSMLMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|296186909|ref|ZP_06855310.1| tRNA(Ile)-lysidine synthetase [Clostridium carboxidivorans P7]
 gi|296048623|gb|EFG88056.1| tRNA(Ile)-lysidine synthetase [Clostridium carboxidivorans P7]
          Length = 464

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 143/342 (41%), Gaps = 25/342 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  + ++++  + R       ++VAVSGG DSM LL  L+S+   R    I+  A  V+H
Sbjct: 1   MIETVLKTINRY-RMFNKGDKVIVAVSGGPDSMSLLHILYSL---RKQLNIELCAAHVNH 56

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
           CLR   +  +  YV + C +L I     S   +K          +A R ARY   ++  K
Sbjct: 57  CLRGNESDKDEEYVKEFCEKLNIEFRSKSVDINKIMKMQNISCESAGRNARYDFFNDLKK 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +NA  I  AH  +DQ ET+ MR  R     G GL G+        N++  RP +   R 
Sbjct: 117 ELNAQKIAIAHNANDQAETILMRIMR-----GTGLEGLVGIKAVRDNIF-VRPLIDVTRH 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVN 231
           +I  +  + NI+   D +N +  + R +VR  +           +   + +  D     N
Sbjct: 171 EIEEYCCKENINPRIDKTNLETIYSRNKVRLELIPYIQENFNKDIIKVLNRLSDTIKIDN 230

Query: 232 NAVAMLIPKYLTVH---MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
             +  +  +    +       + IS++    +  ++  ++R +     G ++      + 
Sbjct: 231 EYLETVAKEKFKKYCDIQGEKVIISKEAFLENEAIITRIIRKALYEVTGNLNNFEKIHIY 290

Query: 289 RVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328
            ++      +GK   +    VV ++  + ++I + V+    +
Sbjct: 291 DIINIQSRSTGKNIDLPNHVVVSNKYGD-IYILKKVKENKEV 331


>gi|54310067|ref|YP_131087.1| cell cycle protein MesJ [Photobacterium profundum SS9]
 gi|61216518|sp|Q6LN41|TILS_PHOPR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|46914506|emb|CAG21285.1| hypothetical cell cycle protein MesJ [Photobacterium profundum SS9]
          Length = 435

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 130/318 (40%), Gaps = 17/318 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++ +    ++A+SGG DS  LL  +   + +    + +  A+ V H L   A    +   
Sbjct: 13  NIPHSNRFVIALSGGLDSRVLLHLMGRFIQEN--PQYQCDAVHVHHGLSVNADKWAQQCL 70

Query: 75  DVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                 +I   +         +  +   ARE RY  +S+H +      ++TA   DDQLE
Sbjct: 71  QWAFEEKITCHIEHVTLVLGNRISVEQQAREQRYLALSKHVQQ--GDCLLTAQHADDQLE 128

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GL+ M ++  + ++  + RP L+  R+ I  + +   + W ED S
Sbjct: 129 TFLLALKRGSGP--AGLASMPESTTFGISYHL-RPLLQVTRQSITDYGIAHQLEWVEDES 185

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D R++R  +R  +  + LH  +  ++K       +      L+ + L  H+   + + 
Sbjct: 186 NQDQRYDRNFLRHQITPL-LHQRWPGIRKAVSRSAALCGEQEALLNELLASHLSKALHVD 244

Query: 254 QDILNID---STLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRV 307
           Q +  ++     +   L+R   ++    + +P    ++++       +      V     
Sbjct: 245 QSLKIVELGSERIGKQLIRQWLSLFT--VLMPSQAQLQQIWQSVVLAQDDANPQVCWDNH 302

Query: 308 VIDRRANFLWITRAVRNL 325
            I R    L++ +   ++
Sbjct: 303 QIRRYKQRLYVVKQWADI 320


>gi|228995454|ref|ZP_04155124.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17]
 gi|228764315|gb|EEM13192.1| tRNA(Ile)-lysidine synthase [Bacillus mycoides Rock3-17]
          Length = 480

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 14/244 (5%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + +E V  F +    L   + I+V VSGG DS+ LL  L   L  R   K+K     VDH
Sbjct: 8   TFVEKVDEFAKQHDVLEEHSTIVVGVSGGPDSLALLYYL---LEKREEKKLKIVVAHVDH 64

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAK 115
             R + + +++++V ++C ++ +    +    S+ Q         AARE RYA +    K
Sbjct: 65  MFRGDESYEDLQFVENLCRKIGVICETIRINVSQYQQQYGMNAQVAARECRYAFLERIMK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +   H  DDQ+ET+ MR  R    KG   +G+     +    ++ RP L   +E
Sbjct: 125 KYDARYVALGHHGDDQMETILMRLVRGSTPKGY--AGIAVKRPFHSG-YVIRPLLAVTKE 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I ++  +  ++   DPSN  + + R R+R++V            ++FQ+  + +    A
Sbjct: 182 EINAYCKRLGVTPRMDPSNEKEVYTRNRLRKYVLPYLKEENPHVHERFQNFSMLMQEDEA 241

Query: 236 MLIP 239
            L  
Sbjct: 242 YLQE 245


>gi|238792737|ref|ZP_04636368.1| tRNA(Ile)-lysidine synthase [Yersinia intermedia ATCC 29909]
 gi|238727845|gb|EEQ19368.1| tRNA(Ile)-lysidine synthase [Yersinia intermedia ATCC 29909]
          Length = 455

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/319 (23%), Positives = 131/319 (41%), Gaps = 17/319 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG D   +L+ L   L  +   ++K  AI + H L   A   V++  
Sbjct: 18  QLGDHRHVLVGFSGGLD-SSVLLHLLVSLRQQLLPELKVRAIHIHHGLNPLADCWVKHCQ 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C +  +   VV         G+ AAAR ARY   S H       +++TA   DDQ ET
Sbjct: 77  QQCDQWDVPLEVVRVNIDPRHNGIEAAARTARYQAFSSHLAAN--EVLLTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSSMAGRMPFAHS-QLLRPLLAFSRETLENYAQVQQLRWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253
            D+RF+R  +R  V  + L+  +    +       +      L+ + L  +++ +     
Sbjct: 192 QDNRFDRNFLRLSVLPL-LNQRWPHFAQATARSASLCAEQEQLLDELLADNLQQLQNPDG 250

Query: 254 ----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGR 306
               + +L         +LR   A  GG   +P    ++R+ L     +      +++G 
Sbjct: 251 ALSIEGLLLASEAKRGAILRRWLA--GGGALMPSQNQLQRLWLEVAMARQDAEPQLTLGA 308

Query: 307 VVIDRRANFLWITRAVRNL 325
             + R   +L++   +  +
Sbjct: 309 HQVRRFRQYLYLLPQLAEI 327


>gi|268601288|ref|ZP_06135455.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18]
 gi|268585419|gb|EEZ50095.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18]
          Length = 436

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M        N  I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 248 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 305

Query: 312 RANFLWITRAVRNLPTLILYPEE 334
            A  L++  + +      L    
Sbjct: 306 YAGRLFVFASEQLAKPAFLKDGT 328


>gi|268594781|ref|ZP_06128948.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae 35/02]
 gi|268596895|ref|ZP_06131062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae FA19]
 gi|268548170|gb|EEZ43588.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae 35/02]
 gi|268550683|gb|EEZ45702.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Neisseria gonorrhoeae FA19]
          Length = 435

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 119/338 (35%), Gaps = 15/338 (4%)

Query: 1   MFLSPIES-VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M L   E  ++      +      VA+SGG DS+ LL  L        F      A+ + 
Sbjct: 1   MTLDAFEQCLKDCFPQGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIH 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H L   A D   +  + C  L +    V     K   G+ AAAR+ RYA  +        
Sbjct: 58  HGLSPRADDWADFCRNYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAEFA----EKGF 113

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            ++  AH  DDQ+ET  +   R    +   L+ M        N  I RP L   R+DI  
Sbjct: 114 DVLALAHHRDDQIETFMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWD 171

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +  +  +   ED SNTD  + R R R  +       +    +   +    +   +A+L  
Sbjct: 172 YARKHGLPNIEDESNTDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEE 231

Query: 240 ---KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
              +       +    +   L        ++LR    +    I +P   ++  +   L  
Sbjct: 232 VVVQDCRWVCGAGYFDTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTE 289

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
            K G  ++    +   A  L++  + +      L    
Sbjct: 290 AKTGRWNLQGFELHHYAGRLFVFASEQLAKPAFLKDGT 327


>gi|227891603|ref|ZP_04009408.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC
           11741]
 gi|227866750|gb|EEJ74171.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius ATCC
           11741]
          Length = 453

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 121/297 (40%), Gaps = 13/297 (4%)

Query: 13  VRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           +R L +    +L+AVS G DSM LL  +  +        I+ +   +DH LRE +K+E +
Sbjct: 17  LRDLKISNRKVLLAVSTGVDSMVLLSGMLKLSK---VLNIEINVAYIDHQLREQSKEETK 73

Query: 72  YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++ + C    I   V  W K   P   + AAARE RY    +  K  N   ++TAH  DD
Sbjct: 74  FIKEFCFARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDD 133

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET  M+  R    +   L  +    ++  +  I RP L   +++I  +  Q  I + E
Sbjct: 134 QAETFLMKLIRGGNIQ--QLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 191

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKYLTVHMR 247
           D +N  D ++R R+R  +  +        +    +   ++ N   A+  +    L    +
Sbjct: 192 DETNKSDDYQRNRLRHHIIPVLKAENPEFLNHVLEYTQQLTNNLQAIQEVADVKLNKISK 251

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                    +         LL     + G +I       +++++  L   K+     
Sbjct: 252 EETLDYDKFVKESPLWQRILLERYLEVKGLEIK---ETQVQQILAMLNDEKKPQAKF 305


>gi|329298696|ref|ZP_08256032.1| tRNA(Ile)-lysidine synthetase [Plautia stali symbiont]
          Length = 432

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 137/368 (37%), Gaps = 25/368 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A  ++A SGG DS  LL  L S    R   +++   + V H     A     +   
Sbjct: 10  LPADARCVLAFSGGLDSSVLLYQLVSW--QRQQPQLRVRTLHVHHGFSPNADRWAAHCQQ 67

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C +  I   V+  +      G+ AAAR ARY  +  H +      ++TA   DDQ ET+
Sbjct: 68  QCQQWHIPCEVLRVQVDARAGGIEAAARTARYQALFTHLQP--GEYLLTAQHLDDQAETL 125

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +  +R     G+        +      W  RP L   R+ + ++ +   + W +D SN 
Sbjct: 126 LLALKRGSGPAGLAAMPQQRQV---NGHWHLRPLLNLSRQQLEAYAVGHQLDWIDDESNA 182

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-- 253
           D R++R  +R+ V  + L A +            +      L+ + L+  +  +      
Sbjct: 183 DRRYDRNFLRQDVLPL-LQARWPHFSAASARSAALCGEQEQLLDELLSEQLAQLTDAQGA 241

Query: 254 ---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307
                +L         LLR      GG   +P   +++R+   ++  +   + C+  G  
Sbjct: 242 LHFPPLLACSEARRHALLRRWIGERGGA--MPARDALQRITDEVMHSREDAQPCLRFGAH 299

Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI-GPQSYRKADVPS 366
            + R    L+       LP      + +  W    Q   L D L ++    +  +   P+
Sbjct: 300 ELRRYRERLYW------LPRQHSLSQHSLTWQQLTQPLILPDGLGELHASPALAELCRPA 353

Query: 367 GIPPIIAQ 374
               +I +
Sbjct: 354 ADEQVIVR 361


>gi|225027805|ref|ZP_03716997.1| hypothetical protein EUBHAL_02064 [Eubacterium hallii DSM 3353]
 gi|224954855|gb|EEG36064.1| hypothetical protein EUBHAL_02064 [Eubacterium hallii DSM 3353]
          Length = 513

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 1   MFLSPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M+    E V  F++          IL+ +SGG+DS+ L       L+ R    +K  A+ 
Sbjct: 1   MWDKHWERVDSFLKKWKMVQEGDSILLGISGGADSVCLA---RYFLARREALSLKLYAVH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISE 112
           ++H LR E AK +  +V D C +  ++ +V    +  ++ + +     A R ARY    +
Sbjct: 58  INHMLRGEEAKRDEEFVQDFCHKWNLSLNVEYRNIKEESRQKKCSEEEAGRIARYECFEK 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           +AK  +   I  AH  +D  ET+  R  R    +GM         +  +N  I RPFL  
Sbjct: 118 YAKEYHCGKIAVAHHQNDAAETILFRMLRGTGPQGMA-------GILPVNGKIIRPFLCL 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            RE+I   L     ++ +D +NT++ + R  +R  +     H          +L +++  
Sbjct: 171 SREEIMDILQNIGQNYVDDSTNTNEEYSRNYIRHRILPEMEHVNQKAAAHISELGMQMQE 230

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDS--------TLLFYLLRVSAAICGGQISLPGY 284
            +A + P+   ++  ++IA  Q  L ++              ++R       G       
Sbjct: 231 LLAYVTPQMEKLYNENVIANEQGELFLEEKTFSVMSLFEQKEMMRRMLFEISGHRKDISL 290

Query: 285 RSMER-VMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
             +E+ + L      +       V+  R  + L + +
Sbjct: 291 VHVEQMLALMANKEGKQQNCPYGVLAKRVRDGLLLMK 327


>gi|237807600|ref|YP_002892040.1| tRNA(Ile)-lysidine synthetase [Tolumonas auensis DSM 9187]
 gi|237499861|gb|ACQ92454.1| tRNA(Ile)-lysidine synthetase [Tolumonas auensis DSM 9187]
          Length = 441

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 130/323 (40%), Gaps = 17/323 (5%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            SV   +  L+ P H+LV  SGG DS  LL  L   +S R        A+ V H L   A
Sbjct: 3   ASVFSVLDQLIRPGHLLVGFSGGLDSRVLLELLARYISQRD--GFSLQAVHVHHGLNPKA 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + + VC  L +       +  K  +  L   AR+ARY +  ++       +++TA
Sbjct: 61  DQWLTHCAQVCDVLTVPFIAKRVEIEKKARQSLEDLARQARYDVFRQNLPEGG--VLLTA 118

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQLET+ +  +R    +G+    +           + RP L   R+ +  + + + 
Sbjct: 119 HHQDDQLETLLLALKRGSGPRGLSAMPVKTAFA---GGHLVRPLLTFSRQQLSDWAISQQ 175

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +SW ED SN DDRF+R  +R+ V  +       +     +   L  +    +  +  + L
Sbjct: 176 LSWIEDDSNQDDRFDRNFLRQKVIPLLRQRWPEITATASRTAGLCAEQETLLDEIAQQDL 235

Query: 243 TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298
                   ++   +L N+       LLR       G  ++P    ++++       +   
Sbjct: 236 MASQHPDGSLDISLLDNLSLARRHQLLRFWLRQRTG--TVPSQVQLQKIWPEVALAREDA 293

Query: 299 RGCVSIGRVVIDRRANFLWITRA 321
              +   + +I R  + L+   A
Sbjct: 294 TPELVWQKGIIRRYQHRLYQVNA 316


>gi|291043882|ref|ZP_06569598.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2]
 gi|291012345|gb|EFE04334.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2]
          Length = 445

 Score =  230 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 26  QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 82

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 83  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M        N  I RP L   R+DI  +  +  +   ED SN
Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 196

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 256

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 257 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314

Query: 312 RANFLWITRAVRNLPTLILYPEE 334
            A  L++  + +      L    
Sbjct: 315 YAGRLFVFASEQLAKPAFLKDGT 337


>gi|83644690|ref|YP_433125.1| ATPase [Hahella chejuensis KCTC 2396]
 gi|83632733|gb|ABC28700.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Hahella chejuensis KCTC 2396]
          Length = 445

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 143/399 (35%), Gaps = 24/399 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + + +A SGG DS  LL A       ++    +  AI V H L   A     +   
Sbjct: 25  LPDFSRLFIAYSGGLDSSVLLHAARRAWPAKT----QIEAIHVHHGLSPNADAWAEHCQK 80

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C  L +A              L AAAREARY +   +       +++  H  +DQ ET+
Sbjct: 81  ECQSLDVACHAHHVSVMAVGDSLEAAAREARYRVFERYLSEHADAVLLQGHHQNDQAETI 140

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R  + +  KG  L+G+         + + RP L   R ++ +   +  +SW ED SN 
Sbjct: 141 LFRLLKGHGVKG--LAGIPRQRTLGKGI-LRRPLLDFTRLELEALAQRWGLSWVEDESNV 197

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D  F+R  +R  +           +    +   +++ A ++L            ++  + 
Sbjct: 198 DAVFDRNFLRNEILRPMSARWRNAVAMIAETGRRMSEASSLLDELAEIDLQGETVSADEL 257

Query: 256 ILN----IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            L     +       +LR      G   S      +   ML  +  ++ C S+G  V+ R
Sbjct: 258 ELAVLSGLSPHRRKNVLRYWLQAAGLTPSESDLAEILAQMLHAEGSRQPCYSLGESVLRR 317

Query: 312 RANFLWITRAVRNLP---TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
               L++T A+   P         EE  +         +   + +   +  R+  V   +
Sbjct: 318 HDGKLYLTEAIDAPPSGYEAAWSLEEALL-------TPVGKLIAEPAHEGVRQPTVDETV 370

Query: 369 PPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYA 407
                +      P   GG     P  +++ + D+P    
Sbjct: 371 IVRFRRGGERFRPKGRGGSR---PLKKWLQEQDIPPWRR 406


>gi|260584480|ref|ZP_05852227.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633]
 gi|260157998|gb|EEW93067.1| tRNA(Ile)-lysidine synthase [Granulicatella elegans ATCC 700633]
          Length = 450

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 78/363 (21%), Positives = 140/363 (38%), Gaps = 18/363 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DSM LL +   +   + F  ++FS + + H LR+ + +E   V + C+   I
Sbjct: 21  LLAVSGGVDSMVLLESFFKL--QKKFPTLQFSVVHIHHHLRKESDEEEEMVRNFCNERSI 78

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  V  W+   + + G+   AR+ RY  + E  K   A  ++ AH  DDQ ETV M+  R
Sbjct: 79  SIEVYHWEQGFEQRVGIEEKARKFRYQKLEESMKKNKARYVVVAHHADDQAETVLMKLTR 138

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G  ++GM     +    ++ RPFL   +ED+  +     I + ED SN    + R
Sbjct: 139 GSTIEG--IAGMKSIRPFSEG-YLIRPFLTVDKEDLYEYASIHQIPFKEDSSNQSLEYTR 195

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI----- 256
            R R+ +  +         +K  +    +     +++        + ++ +         
Sbjct: 196 NRFRKEIIPLFKQENSKFNQKIHEFTKTLQEQQEVILMLANQWMEQELLELHNGWSWDKG 255

Query: 257 --LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
             +     L   +L   +   GG +S      ++  ++   S     +  G     R   
Sbjct: 256 RYIKQPQGLQKVILVEISKKLGGLLSAKNVLDIQEAIISDTSQMSLNLPNGWSFQKRYQQ 315

Query: 315 FLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGP-QSYRKADVPSGIPPIIA 373
            L I    + +P   +  E   + D         D  I     Q +         P  I 
Sbjct: 316 LLIIKEESKEIPYQEIRIEGFQLAD----IVLSEDERISFTAEQGWEMFLSMEDFPLTIR 371

Query: 374 QRA 376
           +R 
Sbjct: 372 RRK 374


>gi|312128221|ref|YP_003993095.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis
           108]
 gi|311778240|gb|ADQ07726.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor hydrothermalis
           108]
          Length = 456

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 135/335 (40%), Gaps = 28/335 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  +E V+  +     L     +L+  SGG DSM LL  +  +  + S   +  +   ++
Sbjct: 1   MELLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCICRLKDEYS---LDITVAHLN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
           H LR  A D+ ++V ++C R  I         +K           A R ARY+   E A+
Sbjct: 58  HMLRPEADDDEKFVIEMCKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAQ 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +N   I+  H  +D +ET ++   R    +G+         +  +   I+RP +   RE
Sbjct: 118 ELNIDRILLGHNKNDVVETFFLNLFRGSGMEGLA-------SVPPVRDIIARPLINVSRE 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227
           +I  F    NI +  D +N   +++R  VR  +  +         L+ ++  ++  ++  
Sbjct: 171 EIEEFAKVNNIPFVVDKTNFSLKYKRNIVRNEILPLIKEKFGESVLNTIFRTVEIIREES 230

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            ++         + +       +   +   N+ + L   ++++        IS    + +
Sbjct: 231 DQIEELAQKYFQECVQKEDIYYVLNIEKTKNLPAFLRRRIIKMILEYFNSAISYDMLKEI 290

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322
           E +   L SGK+       +V++++ + L   R  
Sbjct: 291 EDLFS-LPSGKKKLYK--DLVVEKQNDSLVFYRKA 322


>gi|297520460|ref|ZP_06938846.1| tRNA(Ile)-lysidine synthetase [Escherichia coli OP50]
          Length = 286

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 17/291 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   V + 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVTHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +VC + ++   V   + ++   G+   AR+ RY   +     +   +++TA   DDQ E
Sbjct: 65  ENVCQQWQVPLVVERVQLAQEGLGIEVQARQVRYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+   G            + RP L   R ++  + L   + W ED S
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEF---AGTRLIRPLLARTRGELEQWALAHGLRWIEDES 179

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI- 252
           N DD ++R  +R  V  +    L  +   F +   +     A        +    +    
Sbjct: 180 NQDDSYDRNFLRLRVVPL----LQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQ 235

Query: 253 -SQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVMLFLKSGK 298
             Q  L I   L     R +A     + G    +P   ++ R+   +   +
Sbjct: 236 TPQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAR 286


>gi|253996656|ref|YP_003048720.1| tRNA(Ile)-lysidine synthetase [Methylotenera mobilis JLW8]
 gi|253983335|gb|ACT48193.1| tRNA(Ile)-lysidine synthetase [Methylotenera mobilis JLW8]
          Length = 500

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 167/429 (38%), Gaps = 64/429 (14%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           +L  P  +L+A+SGG DS  LL  L  +   RS    +  A+ V H L   A     +  
Sbjct: 72  ALAAPPRLLLALSGGLDSAVLLHLLAGL---RSSLGFELYALHVHHGLSPNADAWAAWCE 128

Query: 75  DVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             C  L++  S+   K ++    G+ AAAR  RY  + +  + + A  ++TAH  DDQ E
Sbjct: 129 QQCQLLQVPISISRVKVNQASGLGIEAAARLLRYQALFDARQALEADFVVTAHHQDDQAE 188

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ ++  R    KG+           D    + RP L   R+ + ++ +Q  ++WC+D S
Sbjct: 189 TLLLQLFRGSGVKGL-----SSMAAVDHTRSLMRPLLGVSRQSLHAYAIQHALTWCDDES 243

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-- 251
           N + R+ER  +R  V  I L   Y  ++             + L+ +   +  + ++A  
Sbjct: 244 NDNTRYERNFIRHDVMPI-LQERYPSVQSVIARTASHLAEASTLLEQLAEIDAQVLVAND 302

Query: 252 --ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGR 306
               Q +  +       LLR   A    ++ +P    +    + +L  ++     + I  
Sbjct: 303 SLCLQGLALLSQARAKNLLRWWLA--QHKLVMPTSEHLGEMLQQLLNARADAELSIQIQH 360

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTV--WDG--------------------RYQF 344
             + R     ++       P  +++  E T+   DG                    R + 
Sbjct: 361 YTLRRYQQRAYLCVVQVCEPFDLVWNGEATLMMPDGGLLTFKQVQGAGLALKFGMTRLRI 420

Query: 345 QNLSDSLIQIGPQSYRK----------ADVPSG----IPPIIAQRALSSMPS-------- 382
            N S    +  P + R           A++P      +P I  Q +L+ +P         
Sbjct: 421 TNRSGGE-RFKPDAARPTRTLKHLLQAANIPPWQRDHLPLIYWQDSLACVPGVGIAHELK 479

Query: 383 KEGGKPLLA 391
             GG+P +A
Sbjct: 480 AAGGEPGIA 488


>gi|304387557|ref|ZP_07369746.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091]
 gi|304338444|gb|EFM04565.1| tRNA(Ile)-lysidine synthase [Neisseria meningitidis ATCC 13091]
          Length = 445

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 113/311 (36%), Gaps = 18/311 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 26  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIP---DALHIHHGLSPRADDWADFCQ 82

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 83  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +     I RP L   R+DI  +  +  +   ED SN
Sbjct: 139 FMLAVARGGGLR--ALAAMPTVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 196

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           +D  + R R R  +    L  L  ++  F    +    A+   +     +  +    + +
Sbjct: 197 SDTAYLRNRFRHCI----LPELSAQIPHFGRHVLNNVRALQEDLALLDEIIGQDCRWVCE 252

Query: 255 DILNIDSTLLFYLLRVSAAIC-----GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           +          + LR    I         I +P   ++  +   L   K G  ++    +
Sbjct: 253 EGSFDTMRWQTFSLRRKTHILRHFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFEL 312

Query: 310 DRRANFLWITR 320
              A  L++ R
Sbjct: 313 HHYAGRLFVFR 323


>gi|258627367|ref|ZP_05722151.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM603]
 gi|258580405|gb|EEW05370.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM603]
          Length = 440

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 129/324 (39%), Gaps = 18/324 (5%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +++A+SGG DS  LL  L      R        A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            V+     C    I+  +   +        +   AREARY  +S+H    + TL++    
Sbjct: 64  WVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQHV--GSDTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG  LS M     +     ++RP L   R+DI ++ +Q+ +S
Sbjct: 122 ADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQG-HLARPLLTVSRQDIEAYAMQKKLS 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  +  + L   +  +++      ++     +L+ + L   ++
Sbjct: 179 WVTDESNLDTRYERNFLRHHITPV-LAERWPSIRQAVQRSAELCAEQEVLLQELLADALK 237

Query: 248 SIIAISQDILNIDSTLLFYLLRVS---AAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
             I     +L           R     A     ++ +P  +  +++              
Sbjct: 238 RAITQDGGLLIPTLAESSEASRRQLIRAWFAHHRLPMPSRQHTDQLWYEVALASEDANPK 297

Query: 302 VSIGRVVIDRRANFLWITRAVRNL 325
           + + ++ + R    L + +   +L
Sbjct: 298 LRLNQIEVRRFRQQLHLVQPESDL 321


>gi|310658245|ref|YP_003935966.1| trnaile lysidine synthetase [Clostridium sticklandii DSM 519]
 gi|308825023|emb|CBH21061.1| tRNAile lysidine synthetase [Clostridium sticklandii]
          Length = 464

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 23/313 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +  I+        +     ILVA+SGG DS+ LL AL  +    ++  IK  A  ++H
Sbjct: 1   MVIEKIKQTIERENLIENKDKILVALSGGPDSVCLLHALKKL---ETYYNIKIYAAHLNH 57

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R   A+ +  Y + +C  L +   V    V     + +  L  AAR+ RY ++ E   
Sbjct: 58  KIRGIEAQKDALYAAKLCDELDVPFFVKAIDVPAYAKEKKMTLEEAARKLRYDMLFEVKN 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            I A  I  AH  DDQ ETV MR  R       GL GM     Y     + RP +   + 
Sbjct: 118 RIGAKKIAVAHNLDDQAETVIMRLIRGTGI--TGLKGMD----YKRGDGVIRPLMDISKA 171

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK--------FQDLR 227
           +I S+  +  ++   D +N +  + R ++R  +           +K          ++  
Sbjct: 172 NIVSYCDENKLNPRIDYTNLETEYTRNKIRLKLLPFIEQEFSANIKDTISRMANILREDS 231

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
             +      +  + +  +   II +  +++ +  S+L+  L+R++     G +       
Sbjct: 232 DYLEAEAQRIFEEQVLENTNEIIKLDIEELKSTHSSLVKRLIRMAIKTLAGTLEGIDNVH 291

Query: 287 MERVMLFLKSGKR 299
           +E ++  +K+ K 
Sbjct: 292 IEDILALIKNSKN 304


>gi|71892070|ref|YP_277800.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123641037|sp|Q493B5|TILS_BLOPB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|71796176|gb|AAZ40927.1| tRNA(Ile)-lysidine synthetase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 510

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 135/325 (41%), Gaps = 24/325 (7%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETA 66
           R     LV    ++++ SGG DS  LL  L  + ++            AI V H +   +
Sbjct: 15  RKVTHCLVGHTRLVLSYSGGLDSTVLLDILTRLKNNSDHFTSSPFMLRAIYVHHGISNYS 74

Query: 67  KDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            +   +  + C    I  SV+    +     Q  + A AR  RY  +    +  +  +++
Sbjct: 75  DEWASHCFNQCKIRGIPFSVIHINCYNAENKQRNIEALARNLRYKKLYN--RLNSKEILL 132

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  +DQ+E++++  +R       GLSGM    LY     + RP L C RE +  +  +
Sbjct: 133 TAHHMNDQVESLFLALKRGSGP--SGLSGMSKNALYANKYRLLRPLLDCSREQLEMYAYK 190

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPK 240
           + + W ED +NTD RF+R  +R  +    L ++Y +   F  +     ++      L+ +
Sbjct: 191 KKLVWIEDDTNTDTRFDRNFLRIKI----LPSIYQRWPCFNQVVARTAQLCRDQENLLNE 246

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS----LPGYRSMERVM---LF 293
            L+   + +I  S   L       + + +  A +    +     +P Y+ + R+    + 
Sbjct: 247 LLSESFQKLIDESDGSLLFIPLFQYSIPKRQALLRRWLLHFSMKMPSYQLINRIWKEVVL 306

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWI 318
            +      + + + +  R    L+I
Sbjct: 307 SRKDATPILQLDKYLCRRFREKLYI 331


>gi|312792833|ref|YP_004025756.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312179973|gb|ADQ40143.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 456

 Score =  229 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 136/339 (40%), Gaps = 28/339 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  +E V+  +     L     +L+  SGG DSM LL  +  +  + S   +  +   ++
Sbjct: 1   MELLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLNCICRLKDEYS---LDITVAHLN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
           H LR  A D+ ++V ++C R  I         +K           A R ARY+   E A+
Sbjct: 58  HMLRPEADDDEKFVIEICKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEVAE 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +N   I+  H  +D +ET ++   R    +G+         +  +   I+RP +   RE
Sbjct: 118 ELNIDRILLGHNKNDVVETFFLNLFRGSGLEGLA-------SVPPVRDIIARPLINISRE 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227
           +I  F    NI +  D +N   +++R  VR  +  +         L+ ++  ++  ++  
Sbjct: 171 EIEEFARVNNIPFVVDKTNFSLKYKRNIVRNEILPLIKEKFGESVLNTIFRTVEIIREES 230

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            ++         + +       +   +   N+   L   ++++        IS    + +
Sbjct: 231 DQIEELAQKSFEECVQKEDIYYVLNIEKTKNLPVFLRRRIIKMILEYFNAPISYDILKEI 290

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326
           E +   L SGK+   +   +V++R+ + L   R     P
Sbjct: 291 EEL-ASLSSGKKKVYN--ELVVERQNDELVFYRKSEESP 326


>gi|331007449|ref|ZP_08330624.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC1989]
 gi|330418742|gb|EGG93233.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC1989]
          Length = 483

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 143/395 (36%), Gaps = 31/395 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             +++A SGG DS  LL A+          F      A+ V+H L + A    ++     
Sbjct: 37  KRLVIAYSGGVDSTVLLHAVVEAAKQGLIPFSLSSIVAVHVNHQLSDQADCWQQHCQQSA 96

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L IA    + +      G+ AAAR+ARY++     +      ++  H   DQ ETV +
Sbjct: 97  ESLGIACFSEAVRVESTGKGVEAAARDARYSVFEGFLQP--GDCLLLGHHQGDQAETVLL 154

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    KG+    +   +       + RP L   +  I+++  Q  ++W ED SN  D
Sbjct: 155 RLFRGAGVKGLTAMPVSRAMGKAS---LLRPLLAVNQAAIQAYARQHQLTWVEDESNQSD 211

Query: 198 RFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
            ++R  +R  V  +           L    +   +    +++     + +      R+  
Sbjct: 212 HYDRNFLRNKVMPLMTQRWSSVEPQLSKTAETMVETNTLLSDIAEDDLQQLDHQQARTGY 271

Query: 251 AISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVML--FLKSG--KRGCVSIG 305
           ++    LN  S      LLR           LP  + M ++    F +S      CVS G
Sbjct: 272 SVDFTALNQLSLPRKKNLLRYWCEKL--NYDLPDSQQMIQIEQQFFSRSALLSSACVSWG 329

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS-----YR 360
           R  + + +  L++  A   LP  I        WDG          ++++  +        
Sbjct: 330 RYELRQFSGRLYLMEA---LPKFISPL--AIQWDGASDIDLQGAGVLRVVNKEAVVENTS 384

Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395
           +      +P  I  +A +       G     P  R
Sbjct: 385 EKAREKTMPKGIHIKAQAYQIRWRQGGERCTPADR 419


>gi|27365224|ref|NP_760752.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus CMCP6]
 gi|61217354|sp|Q8DBE4|TILS_VIBVU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|27361371|gb|AAO10279.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus CMCP6]
          Length = 436

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 117/317 (36%), Gaps = 26/317 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       ++VA SGG DS  LL   H    +     +   A+ V H L   A   V+  
Sbjct: 14  QQRKANTRLVVAFSGGVDSRVLLELAHRYAQEHL---LPCCAVHVHHGLSHNADQWVQSC 70

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +  C    I  +V   +    Q   +   AR ARY  +  H       L++T    DDQ+
Sbjct: 71  AAWCQEKNIPLTVERVQLDLTQGNSIEEEARNARYQALRAHINA--DDLLLTGQHADDQV 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M   + +     + RP L  RR++I        + W ED 
Sbjct: 129 ETFLLALKRGSGPKG--LSSMAQQMPFSQG-RLIRPLLDVRRQEIERCAHAIGLHWVEDE 185

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVNNAVAMLIPKYLTVHMRSI 249
           SN D R++R  +R+ +    L AL  +   F         +      L+ + L      +
Sbjct: 186 SNQDTRYDRNFLRQQI----LPALSERWPSFAASVQRSATLCAEQEALLDELLLPVFEQL 241

Query: 250 IAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGC 301
               Q +             F LLR+  A  G    +P    +  +   +   ++     
Sbjct: 242 FGEDQSLAITLLSQQSELARFKLLRMWLAKLG--HPMPTRHQLSLIWQQVALSQADANPI 299

Query: 302 VSIGRVVIDRRANFLWI 318
           + + +  + R    L++
Sbjct: 300 LQLSQGQVRRFNQRLYL 316


>gi|254496251|ref|ZP_05109145.1| cell cycle protein MesJ [Legionella drancourtii LLAP12]
 gi|254354556|gb|EET13197.1| cell cycle protein MesJ [Legionella drancourtii LLAP12]
          Length = 443

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 133/324 (41%), Gaps = 24/324 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++V  SGG DS  LL AL +  S R+    K  A+ ++H +   A    ++ +  C  
Sbjct: 21  GKLIVGFSGGLDSTVLLHALAAQPSLRT----KLVAVHINHGISSNASSWQQHCAQCCHD 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L I     S +  +    +   AR ARYA+ +    T +   ++  H  DDQ ETV ++ 
Sbjct: 77  LGIQFITESVQFDR-SANIEEHARIARYAIFASLLTTKDC--LILGHHQDDQAETVLLQL 133

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G+        + +     + RPFL   R  +  +     + W ED SN +  +
Sbjct: 134 FRGAGIDGLAAMT---AVSHLGAGTLVRPFLTYSRLQLAHYATVHQLIWIEDESNQEITY 190

Query: 200 ERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            R  +R+ +  + +         +       Q  +  ++      I     +   +  ++
Sbjct: 191 SRNYLRQQIMPLLVEKWPGVVGTIARSALHCQQAKSNLDALATQDIEGGSELITLTSTSL 250

Query: 253 SQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308
             D +LN++   +  +LRV   +   Q+ LP   +  R+   +L+ ++     VS G ++
Sbjct: 251 CIDPLLNLNFARIANILRVW--LRNNQVQLPSTATFHRLINELLYARTDAAPAVSWGDIL 308

Query: 309 IDRRANFLWITRAVRN-LPTLILY 331
           I R   +L++ R     LP   ++
Sbjct: 309 IRRYQKYLYLDRKTSATLPACSVW 332


>gi|320155609|ref|YP_004187988.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus MO6-24/O]
 gi|319930921|gb|ADV85785.1| tRNA(Ile)-lysidine synthetase [Vibrio vulnificus MO6-24/O]
          Length = 436

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 117/317 (36%), Gaps = 26/317 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       ++VA SGG DS  LL   H    +     +   A+ V H L   A   V+  
Sbjct: 14  QQRKANTRLVVAFSGGVDSRVLLELAHRYAQEHL---LPCCAVHVHHGLSHNADQWVQSC 70

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +  C    I  +V   +    Q   +   AR ARY  +  H       L++T    DDQ+
Sbjct: 71  AAWCQEKNIPLTVERVQLDLTQGNSIEEEARNARYQALRAHINA--DDLLLTGQHADDQV 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M   + +     + RP L  RR++I        + W ED 
Sbjct: 129 ETFLLALKRGSGPKG--LSSMAQQMPFSQG-RLIRPLLDVRRQEIERCAHAIGLHWVEDE 185

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVNNAVAMLIPKYLTVHMRSI 249
           SN D R++R  +R+ +    L AL  +   F         +      L+ + L      +
Sbjct: 186 SNQDTRYDRNFLRQQI----LPALSERWPSFAASVQRSATLCAEQEALLDELLLPVFEQL 241

Query: 250 IAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGC 301
               Q +             F LLR+  A  G    +P    +  +   +   ++     
Sbjct: 242 FGEDQSLAITLLSQQSELARFKLLRMWLAKLG--HPMPTRHQLSLIWQQVALSQADANPI 299

Query: 302 VSIGRVVIDRRANFLWI 318
           + + +  + R    L++
Sbjct: 300 LQLSQGQVRRFNQRLYL 316


>gi|261211361|ref|ZP_05925649.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC341]
 gi|260839316|gb|EEX65942.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC341]
          Length = 440

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 151/382 (39%), Gaps = 25/382 (6%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +L+A+SGG DS  LL  L      R       +A+ V H L   A  
Sbjct: 7   HFVQQLARHPFRKLLLALSGGVDSRVLLALLAR---GRDEFGWDVAAVHVHHGLSPNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++    C  + +A  +   +        +   AREARY  +S+H    + TL++    
Sbjct: 64  WAQHCQLCCREVGMACQIEYVQLDLASGESIEKMAREARYQALSQHV--GSDTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG  L+ M     +     + RP L   R+ I ++  Q  ++
Sbjct: 122 ADDQLETFLLALKRGSGPKG--LAAMAAYSPFAEG-HLLRPLLTVSRQHIEAYAKQHKLT 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           W  D SN D R+ER  +R  V  +      +++  +++  +L  +    +  L+ + L  
Sbjct: 179 WVTDESNADTRYERNFLRHQVTPVLAERWPSIHQAVQRSAELCAEQEALLQELLAEALKR 238

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
            + +   +    L   S ++   L + A     ++ +P  +  ER+              
Sbjct: 239 AISAEGGLVISALVESSDVMRRQL-IRAWFAHHRLPMPSRQHTERIWCEVALASEDANPK 297

Query: 302 VSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG-PQ 357
           + +  + + R    L++    +A+    ++++  +   +  G    Q  S +   I  P 
Sbjct: 298 LKLNSIEVRRFQQCLYLVPPEKALSGWCSVLVLEQRLPLPQGLGHLQLTSKAGGNIKLPD 357

Query: 358 SYRKADV---PSGIPPIIAQRA 376
              +  V   P G+      R+
Sbjct: 358 DPSQLWVSFEPQGLEACPVGRS 379


>gi|254493722|ref|ZP_05106893.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291]
 gi|268598934|ref|ZP_06133101.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11]
 gi|268603613|ref|ZP_06137780.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1]
 gi|268682089|ref|ZP_06148951.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332]
 gi|268684299|ref|ZP_06151161.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679]
 gi|268686557|ref|ZP_06153419.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|293399092|ref|ZP_06643257.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62]
 gi|226512762|gb|EEH62107.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae 1291]
 gi|268583065|gb|EEZ47741.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae MS11]
 gi|268587744|gb|EEZ52420.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1]
 gi|268622373|gb|EEZ54773.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae PID332]
 gi|268624583|gb|EEZ56983.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679]
 gi|268626841|gb|EEZ59241.1| tRNA(Ile)-lysidine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291610506|gb|EFF39616.1| cell cycle protein MesJ [Neisseria gonorrhoeae F62]
          Length = 436

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAEFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M        N  I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 188 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 248 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 305

Query: 312 RANFLWITRAVRNLPTLILYPEE 334
            A  L++  + +      L    
Sbjct: 306 YAGRLFVFASEQLAKPAFLKDGT 328


>gi|325981478|ref|YP_004293880.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212]
 gi|325530997|gb|ADZ25718.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas sp. AL212]
          Length = 450

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 80/344 (23%), Positives = 135/344 (39%), Gaps = 30/344 (8%)

Query: 9   VRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           VR  + + + P  H+ VA+SGG DS+ LL AL S+  +     +  SA+ ++H +   A 
Sbjct: 16  VRNTLLAHIKPGDHLAVALSGGVDSVVLLHALASLSRE---IPLTLSAVHINHGISSNAT 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAH 126
              ++   +C    I+  +   K  K     L A ARE RY + S+     +A  ++ A 
Sbjct: 73  LWSKFCCHLCHSYGISIYIAYLKIKKETGESLEAKAREERYRVFSQI----HANYVVLAQ 128

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ET+ ++  R    KG+        +       I RP L   R++I S+     +
Sbjct: 129 HLDDQAETLLLQLLRGAGIKGLCGMPPVRKLSSPAIPQILRPLLEISRDEIESYGRLNKL 188

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAMLIP 239
           +W +D SN    F R  +R  +  I           L    + F +    ++   AM   
Sbjct: 189 NWIKDESNDSIIFNRNFLRHEILPILKKRYPNYPKTLLRTSRHFSEASSLLDELAAMDNE 248

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--- 296
             +      I +I          LL Y       +    I+LP    +E ++  + S   
Sbjct: 249 NCMVSGKIQISSIRMLSFARAKNLLRY------NLAQRDITLPSTVKLETILHQIMSAGP 302

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340
               C+S G   I      ++I     +L +   Y     +W+G
Sbjct: 303 DSHPCISFGNTEIRCHKGSIYILSNKASLSSSARY-----IWNG 341


>gi|237747645|ref|ZP_04578125.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13]
 gi|229379007|gb|EEO29098.1| MesJ cell cycle protein [Oxalobacter formigenes OXCC13]
          Length = 473

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 156/399 (39%), Gaps = 29/399 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            SV F ++  +  A I +A SGG DS  LL   H    +         A  V H L   A
Sbjct: 29  ASVSFSLKESLKNARIAIAYSGGLDSSVLLHLAHRFAIE---NDCALFAFHVHHGLNPHA 85

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            D + +  + C RL ++      + + +   G+ A ARE RY  + E  +  +  L++TA
Sbjct: 86  DDWLAHCENECIRLGVSFDSQRVQIDPQSGDGIEAEAREKRYRALGEMCRKHDIPLLLTA 145

Query: 126 HTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           H  DDQ+ETV ++  R     G+     S     +L D  L++ RP L   R+++ S+L+
Sbjct: 146 HHEDDQVETVLLQLMRGTGVAGLSGMEASSHSPELLGDETLFLGRPLLSVSRKELASWLV 205

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +  I+  +D SN D  + R  +R  +  + L  L+   +K      +   +   L+ +  
Sbjct: 206 EAGITHIDDDSNDDVAYTRNAIRHRLVPV-LEDLFPGFQKRLFRTAQHAGSARRLLEEVA 264

Query: 243 TVHMRSIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFL 294
                +  +       + +  ++   +  LLR   A    ++ +P    + +    +L  
Sbjct: 265 KKDFEACTSGKNSLNLEQLRLLNRERIDNLLRYWLA--ASRVRMPSTAWLVQAREQLLEA 322

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR--AVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352
           +   +  + +    I R    + + R           L  +     + R++      +L 
Sbjct: 323 REDAQIDLILDGYTIRRYRQNISLGRTVESTGNQPHPLEIQWHG--ENRFRLHQWHGTLY 380

Query: 353 QIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
               ++    D        + +R L   P +   K  LA
Sbjct: 381 FEESETGFDIDW-------LQRRKLRIEPYRGSAKLKLA 412


>gi|59801231|ref|YP_207943.1| hypothetical protein NGO0820 [Neisseria gonorrhoeae FA 1090]
 gi|75432494|sp|Q5F8F6|TILS_NEIG1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|59718126|gb|AAW89531.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
          Length = 426

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 7   QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 63

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 64  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAEFA----EKGFDVLALAHHRDDQIET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M        N  I RP L   R+DI  +  +  +   ED SN
Sbjct: 120 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 177

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 178 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 238 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 295

Query: 312 RANFLWITRAVRNLPTLILYPEE 334
            A  L++  + +      L    
Sbjct: 296 YAGRLFVFASEQLAKPAFLKDGT 318


>gi|309379968|emb|CBX21379.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 411

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 111/302 (36%), Gaps = 14/302 (4%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+SGG DS+ LL  L        F      A+ + H L   A D   +  + C  L +  
Sbjct: 2   ALSGGLDSVVLLQLLVRAGKKGGFIP---EAVHIHHGLSPRADDWADFCQNYCDMLGVRL 58

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
             V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET  +   R   
Sbjct: 59  ETVKVCVEKNGLGIEAAARQKRYATFA----EKGFDVLALAHHRDDQIETFMLAVARGGG 114

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
            +   LS M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R 
Sbjct: 115 LR--ALSAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRF 172

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDILNIDS 261
           R  +       +    +   +    +   +A+L     +       +    +   L    
Sbjct: 173 RHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYFDTARWLTFSP 232

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
               ++LR    +    + +P   ++  +   L   K G  ++    +   A  L++ R 
Sbjct: 233 RRKTHILRHF--LKENGVPVPNQNALADIARVLTEAKTGRWNVQGFELHYYAGRLFVFRP 290

Query: 322 VR 323
            +
Sbjct: 291 EK 292


>gi|194098553|ref|YP_002001615.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945]
 gi|193933843|gb|ACF29667.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae NCCP11945]
 gi|317164226|gb|ADV07767.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 445

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 14/323 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F      A+ + H L   A D   +  
Sbjct: 26  QGLNGKKTAVALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCR 82

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 83  NYCDMLGVGLETVKVCVEKNGLGIEAAARQKRYAEFA----EKGFDVLALAHHRDDQIET 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M        N  I RP L   R+DI  +  +  +   ED SN
Sbjct: 139 FMLAVARGGGLR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESN 196

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIA 251
           TD  + R R R  +       +    +   +    +   +A+L     +       +   
Sbjct: 197 TDTAYLRNRFRHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYF 256

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            +   L        ++LR    +    I +P   ++  +   L   K G  ++    +  
Sbjct: 257 DTARWLTFSPRRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHH 314

Query: 312 RANFLWITRAVRNLPTLILYPEE 334
            A  L++  + +      L    
Sbjct: 315 YAGRLFVFASEQLAKPAFLKDGT 337


>gi|313639795|gb|EFS04533.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL S4-171]
          Length = 648

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 118/292 (40%), Gaps = 18/292 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L          K   S   ++H LRE A  E   V + C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---QMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +  I   +      K     Q G+   AR ARY    +     N   ++ AH  DDQ+E
Sbjct: 77  EKHEIPFFIEEVNVKKRAKTMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  +   +G SGM           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSSS--IGWSGMQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           N+  ++ R R R+ +      +  A+Y   ++F +   +    + +  + L+ K L  + 
Sbjct: 194 NSSPKYTRNRYRKEILPFLTKENPAIYAHFERFSEETSEDFQYLEDLASDLLKKNLVKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSG 297
                +     N  + L    + +    +     SL     + +++  ++S 
Sbjct: 254 EQATLLLTSFKNEANPLQRRAIHLLLRYLYNKDASLITATHIYQIIQMIQSD 305


>gi|300214978|gb|ADJ79394.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius CECT
           5713]
          Length = 456

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 13/297 (4%)

Query: 13  VRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           +R L +    +L+AVS G DSM LL  +  +        ++ +   +DH LRE +K+E +
Sbjct: 16  LRDLKISNKKVLLAVSTGVDSMVLLSGMLKLSK---VLDVEINVAYIDHQLREQSKEETK 72

Query: 72  YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++ + C    I   V  W K   P   + AAARE RY    +  K  N   ++TAH  DD
Sbjct: 73  FIKEFCFARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDD 132

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET  M+  R    +   L  +    ++  +  I RP L   +++I  +  Q  I + E
Sbjct: 133 QAETFLMKLIRGGNIQ--QLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKYLTVHMR 247
           D +N  D ++R R+R  +  +        +K       ++ N   A+  +    L    +
Sbjct: 191 DETNKSDDYQRNRLRHHIIPVLKAENPEFLKHVLGYTQQLTNNLQAIQEVADVKLNKISK 250

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                    +         LL     + G +I       +++++  L   K+    I
Sbjct: 251 EETLDYDKFVKESPLWQRILLERYLEVKGLEIK---ETQVQQILAMLNDEKKPQAKI 304


>gi|261400234|ref|ZP_05986359.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970]
 gi|269210035|gb|EEZ76490.1| tRNA(Ile)-lysidine synthase [Neisseria lactamica ATCC 23970]
          Length = 411

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 109/297 (36%), Gaps = 14/297 (4%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+SGG DS+ LL  L        F      A+ + H L   A D   +  + C  L +  
Sbjct: 2   ALSGGLDSVVLLHLLVRAGKKGGFIP---EAVHIHHGLSPRADDWADFCQNYCDMLGVRL 58

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
             V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET  +   R   
Sbjct: 59  ETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIETFMLAVARGGG 114

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
            +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R 
Sbjct: 115 LR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNTDTAYLRNRF 172

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDILNIDS 261
           R  +       +    +   +    +   +A+L     +       +    +   L    
Sbjct: 173 RHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYFDTARWLTFSP 232

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
               ++LR    +    + +P   ++  +   L   K G  ++    +   A  L++
Sbjct: 233 RRKTHILRHF--LKENGVPVPNQNALADIARVLTEAKTGRWNVQGFELHHYAGRLFV 287


>gi|83312306|ref|YP_422570.1| ATPase [Magnetospirillum magneticum AMB-1]
 gi|82947147|dbj|BAE52011.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Magnetospirillum magneticum AMB-1]
          Length = 443

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 160/385 (41%), Gaps = 20/385 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VAVSGG+DS+ L +        R     +  A++VDH LR  +  E   V    +R 
Sbjct: 26  RLAVAVSGGADSLALALLAADWAKARGG---EVLALTVDHRLRPESAAEAARVGAWLARD 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I+H +++W+  KP   L AAAR ARY L+ E         +  AH  DDQ ET+ +R  
Sbjct: 83  GISHRILAWEGDKPAADLQAAARAARYGLLGEACAAEGILHLALAHHQDDQAETLLLRLG 142

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+G         +     + RP L   R  + + L  R   W  DPSN +  F 
Sbjct: 143 RGSGLEGLGAMAAERPTSWGR---LLRPLLPVPRVRLEATLRHRGQEWTSDPSNRNPAFA 199

Query: 201 RVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           RVR+R    D+    +  +       +    +  V++ VA    +++T+       +  +
Sbjct: 200 RVRLRHLAGDLAAEGMTPRRLAETAGRLARAQAAVDSMVAEAAARHVTLDPAGFGRLRPE 259

Query: 256 ILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
            L  +   +   LL       GG+   P    +ER+   L  G     ++    I  + +
Sbjct: 260 ALAGLPDEVGLRLLAGLLLSVGGEAHTPRLERLERLHATLCGGLEAARTLAGCRIVPQGD 319

Query: 315 FLWITRA-VRNLPTLILYPEETTVWDGRYQFQNLSDSL-----IQIGPQSYRKADVPSG- 367
            + + R   R  P L L P     WDGR++     D+        +GP+  RK     G 
Sbjct: 320 SVVLCREPARVAPPLDLVPGSRIRWDGRFEAVVAGDAPPGLRLGALGPEGRRKVLAAMGR 379

Query: 368 -IPPIIAQRALSSMPSKEGGKPLLA 391
             P  +   A+ ++P+    + +LA
Sbjct: 380 QRPEPVPTCAIPTLPALYHERGILA 404


>gi|295698551|ref|YP_003603206.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia
           pediculicola USDA]
 gi|291157496|gb|ADD79941.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Candidatus Riesia
           pediculicola USDA]
          Length = 454

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 134/345 (38%), Gaps = 21/345 (6%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
            P   ++   +SL     +LV  SGG DS  LL  L ++   +   KI   AI ++H L+
Sbjct: 7   EPYNLLKLISKSLNPFKKVLVGFSGGMDSTVLLHILMTLRKLKKI-KIDLRAIHINHHLQ 65

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           + +     +   +C   +I+      K S  + G+ + +R  RY  +    +     +IM
Sbjct: 66  KESNLWESHCKKICDLWKISFLSKRVKISSKKYGVESESRAIRYREMRNVLRPK--EVIM 123

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DDQ ET  +  +R     G+       T  +D N  I RP L   +  ++ +  +
Sbjct: 124 TAHHIDDQAETFLLALKRGSGPSGLSSMKFI-TSFHDKN--IVRPLLSFEKTQLKKYAEE 180

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             +SW ED SN  D F+R  +R  V  I L+  +    K      K+      LI + + 
Sbjct: 181 NRLSWIEDQSNFQDLFDRNFLRIHVLSI-LNRRWPYFSKAISNSAKLCEDQENLIEELIK 239

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICG----GQISLPGYRSMERVM---LFLKS 296
            H   +       L I   L F  ++ +  +        +  P    ++ +    +    
Sbjct: 240 PHFLRLFNQRDSSLKIKELLTFSKIKRNVILRNWFKVNHLPNPSRIQLKVLWNNVIRANP 299

Query: 297 GKRGCVSIGRV-VIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340
             +  + + +  VI +  + L+  +  + +           VW  
Sbjct: 300 NSQPELVVFKKYVIRKFRSRLFCFQKFKEINE------SRIVWKN 338


>gi|261377822|ref|ZP_05982395.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685]
 gi|269146124|gb|EEZ72542.1| tRNA(Ile)-lysidine synthase [Neisseria cinerea ATCC 14685]
          Length = 457

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 119/320 (37%), Gaps = 24/320 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +R      +    I VA+SGG DS+ LL  L        F      A+ + H L   A
Sbjct: 30  QQLRNCFPQGLDGQKIAVALSGGLDSVVLLHLLVCAGKKGGFIP---EALHIHHGLSPHA 86

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                +  + C  L +    V     K   G+ AAAR+ RYA+ S         ++  AH
Sbjct: 87  DSWADFCRNYCDTLGVRLETVRVSVEKNGLGIEAAARQKRYAVFS----EKEFDILALAH 142

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET  +   R    +   LS M           I RP L   R++++ +  +  +
Sbjct: 143 HRDDQIETFMLAVARGGGLR--ALSSMPSVRPLGTRGIIWRPLLPFSRQELQDYAERHGL 200

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--------LRVKVNNAVAMLI 238
           S  ED SNTD  + R   R       L  L  ++  F          L+  ++    +++
Sbjct: 201 SNIEDESNTDTGYLRNWFRHR----ALPELSARIPDFDRHVLNNIRVLQEDLSLLDEVVV 256

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
             Y  V        ++  L        ++LR    +    + LP   ++  +   L   K
Sbjct: 257 QDYRFVCGAGGFDTARW-LTFSPRRRSHILRYF--LKENAVPLPNQNALADIARVLAEAK 313

Query: 299 RGCVSIGRVVIDRRANFLWI 318
            G  S+    +   A  L++
Sbjct: 314 TGRWSLQGFELHHYAGRLFV 333


>gi|313635123|gb|EFS01457.1| bifunctional protein TilS/hprT [Listeria seeligeri FSL N1-067]
          Length = 648

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 118/292 (40%), Gaps = 18/292 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L          K   S   ++H LRE A  E   V + C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---QMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +  I   +      K     Q G+   AR ARY    +     N   ++ AH  DDQ+E
Sbjct: 77  EKHEIPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  +   +G SGM           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSSS--IGWSGMQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           N+  ++ R R R+ +      +  A+Y   ++F +   +    + +  + L+ K L  + 
Sbjct: 194 NSSPKYTRNRYRKEILPFLTKENPAVYAHFERFSEETSEDFQYLEDLASDLLKKNLVKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSG 297
                +     N  + L    + +    +     SL     + +++  ++S 
Sbjct: 254 EQATLLLTSFKNEANPLQRRAIHLLLRYLYNKDASLITATHIYQIIQMIQSD 305


>gi|134094514|ref|YP_001099589.1| hypothetical protein HEAR1289 [Herminiimonas arsenicoxydans]
 gi|133738417|emb|CAL61462.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine
           synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS
           [Herminiimonas arsenicoxydans]
          Length = 465

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 134/330 (40%), Gaps = 17/330 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I +A SGG DS  LL  L +  +      ++  A  V H L   A   + +    C+ L
Sbjct: 33  KIAIAYSGGLDSAALLYLLRAYATQHG---LELFAFHVHHGLSLNADQWLAHCQQQCAGL 89

Query: 81  RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +A      +  ++ ++G+  AAR +RYA + E  +  +  L++TAH  DDQ ETV ++ 
Sbjct: 90  GVAFDARRVQIANQDKSGVEEAARHSRYAALGEMCRAHDVPLLLTAHHQDDQAETVLLQL 149

Query: 140 QRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R     G+           +L D  L + RP L+  R D+   +    I++ ED SN D
Sbjct: 150 LRGSGVAGLSGMDSVNHAADLLGDATLLMGRPLLQLARADLEKIVTSNAIAFVEDESNLD 209

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAIS 253
            R+ R  +R  V            ++F        +A  +LI    + LTV +       
Sbjct: 210 PRYARNALRHQVMPTLAQHFPGFQQRFARTAQHAQSAQRLLIELAAQDLTVCLDGDCLDI 269

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVID 310
             +    +  +  +LR      G  + +P    +  +   +L  K   + CV+     I 
Sbjct: 270 TKLRQFSTDRIDSMLRYWFGSRG--VRMPSTSWLNEMRTQLLEAKHDAQLCVTHADCHIR 327

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDG 340
           R  + +++T  +   P  +        WDG
Sbjct: 328 RHRDRVYLTPKLD--PASLEQAPLAFRWDG 355


>gi|187251952|ref|YP_001876434.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191]
 gi|186972112|gb|ACC99097.1| tRNA(Ile)-lysidine synthetase [Elusimicrobium minutum Pei191]
          Length = 241

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 13/228 (5%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           FF R       +LV VSGG+DS+ LL  L  +   + F   +  A  ++H LRE AK + 
Sbjct: 21  FFKR----GDKVLVGVSGGADSVCLLHFLTQLAQKKRF---RVYACHINHSLRENAKKDE 73

Query: 71  RYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   +C +L +   V++        K +  +  AAR+ARY+     AK INA  +  AH
Sbjct: 74  LFTKKLCEQLGVELFVITKDVKNIALKNKLSIEHAARKARYSAFESAAKKINAGYLALAH 133

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD +ET ++   R    KG  L+G+      + N  I RP L  RR+D+ +++    +
Sbjct: 134 HLDDNVETFFLNILRGTKAKG--LTGIPRVRPLNKNTVIIRPLLNIRRQDVINYVKFNKL 191

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            +  D +N+D+++ R  VR  +  +         +    +   +    
Sbjct: 192 KFITDETNSDEKYTRNWVRNKLLPMVEKKQPQIREHILLISKDLEKEC 239


>gi|149907536|ref|ZP_01896283.1| tRNA(Ile)-lysidine synthetase [Moritella sp. PE36]
 gi|149809206|gb|EDM69135.1| tRNA(Ile)-lysidine synthetase [Moritella sp. PE36]
          Length = 474

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 128/339 (37%), Gaps = 19/339 (5%)

Query: 8   SVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  ++SL   P  I++A SGG DS  LL  L        + +  + A+ V H L + A
Sbjct: 13  TFQHALQSLTTKPMQIVLAYSGGLDSHVLLHLLARYQQ--RYPQHAYLAVHVHHGLSDNA 70

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + +     + L I         N   +  L A AR ARY  I++H    + +L++  
Sbjct: 71  DTWLDHCQQTAAALGINFIAEKVVLNVGSRESLEAQARTARYQAIAKHL--NDGSLLLLG 128

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQLET  ++ +R    KG+             N  I RP L   ++ +  +  Q  
Sbjct: 129 QHLDDQLETFLLQLKRGAGVKGLSAMAAQMPFSLQANCQIVRPLLIHPQQALVDYASQAQ 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM--LIPKYLT 243
           +SW ED SN +  ++R  +R  +    + +L  +         +     A    +   + 
Sbjct: 189 LSWVEDESNNNQSYDRNFLRHQI----IPSLKQRWPGIAHAVHRSAELCAEQQALSDEIA 244

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVS----AAICGGQISLPGYRSMERVML---FLKS 296
                  A S   LNI        +R +      + G Q+ +P    +++V L       
Sbjct: 245 EIDLVTCAHSFSGLNIAELDKLSKIRRNNVIRFWLAGQQLPMPSRHHLDKVWLEVVNAAD 304

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335
                +S       R    L+  +    L  +++  E T
Sbjct: 305 DANPQLSWQAGEFRRYQGVLYNQQKYAELKDVVITLEHT 343


>gi|120599536|ref|YP_964110.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. W3-18-1]
 gi|120559629|gb|ABM25556.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. W3-18-1]
          Length = 465

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 143/340 (42%), Gaps = 22/340 (6%)

Query: 9   VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           V  F+ SL   A   +++A SGG DS  L   L      +  G++++  + V H L + A
Sbjct: 10  VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQHGELQYQLVYVHHGLSQHA 67

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
               ++         +   +   +    P+  + A AR  RY  I +H    +  L++TA
Sbjct: 68  DAWAQHCITRGQHYGLPTIIEHVQVKLGPRMSIEAEARRMRYQAIEQHV--GSDDLLLTA 125

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQLET+ +  +R    KG+   G    ++  +     RP L   RE I ++     
Sbjct: 126 HHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQ---VRPLLDVSREHIEAYASANG 182

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           +   ED SN DD+++R  +R  +    L A +  +         +      +I   +++ 
Sbjct: 183 LVHIEDESNQDDKYDRNFLRLDIIPR-LKARWSSIATTASRSAFLCAEQQTVIDTEVSLR 241

Query: 246 MRSII----AISQDILNIDS----TLLFYLLRVSAAICGGQISLPGYRSMERV---MLFL 294
           + + +       Q + N++     T  +  L +   I    ++LP +  + ++   +L  
Sbjct: 242 LPTWLTQAKFTQQTVFNLNGFDSLTPSWQALLLRGFIESQGVALPSFVQLNQIIHQLLNA 301

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
           K   +  + +G   + R AN L++    +++ +   Y ++
Sbjct: 302 KDDAKVLIRVGDCALRRFANQLYLEHYSKHVKSSTEYAKK 341


>gi|262166320|ref|ZP_06034057.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus VM223]
 gi|262026036|gb|EEY44704.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus VM223]
          Length = 440

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 123/319 (38%), Gaps = 22/319 (6%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +++A+SGG DS  LL  L      R        A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             +     C    I+  +   +        +   AREARY  +S+H    + TL++    
Sbjct: 64  WAQDCQTWCQAANISCQIERVQLAVGSGESIEKMAREARYQALSQHV--GSDTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG+                ++RP L   R+DI ++ +Q+ +S
Sbjct: 122 ADDQLETFLLALKRGSGPKGLAAMAAYGPFA---QGHLARPLLTVSRQDIEAYAMQKKLS 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  +  + L   +  +++      ++     +L+ + L   ++
Sbjct: 179 WVTDESNFDTRYERNFLRHHITPV-LAERWPSIRQAVQRSAELCAEQEVLLQELLADALK 237

Query: 248 SIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +          L+R   A    ++ +P  +  +++            
Sbjct: 238 RAITEDGGLSIPTLAESSEASRRQLIRAWFAH--HRLPMPSRQHTDQLWHEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWI 318
             + + ++ + R    L +
Sbjct: 296 PKLRLNQIEVRRFRQQLHL 314


>gi|37680722|ref|NP_935331.1| cell cycle protein MesJ [Vibrio vulnificus YJ016]
 gi|61217308|sp|Q7MIH8|TILS_VIBVY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|37199471|dbj|BAC95302.1| cell cycle protein MesJ [Vibrio vulnificus YJ016]
          Length = 436

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 117/317 (36%), Gaps = 26/317 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       ++VA SGG DS  LL   H    +     +   A+ V H L   A   V+  
Sbjct: 14  QQRKANTRLVVAFSGGVDSRVLLELAHRYAQEHL---LPCCAVHVHHGLSHNADQWVQSC 70

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +  C    I  +V   +    Q   +   AR ARY  +  H       L++T    DDQ+
Sbjct: 71  AAWCQEKNIPLTVERVQLDLTQGNSIEEEARNARYQALRAHINA--DDLLLTGQHADDQV 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M   + +     + RP L  RR++I        ++W ED 
Sbjct: 129 ETFLLALKRGSGPKG--LSSMAQQMPFSQG-RLIRPLLDVRRQEIERCAHAIGLNWVEDE 185

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVNNAVAMLIPKYLTVHMRSI 249
           SN D R++R  +R+ +    L AL  +   F         +      L+ + L      +
Sbjct: 186 SNQDTRYDRNFLRQQI----LPALSERWPSFAASVQRSATLCAEQEALLDELLLPVFEQL 241

Query: 250 IAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGC 301
               Q +             F L R+  A  G    +P    +  +   +   ++     
Sbjct: 242 FGEDQSLAITLLSQQSELARFKLFRMWLAKLG--HPMPTRHQLSLIWQQVALSQADANPI 299

Query: 302 VSIGRVVIDRRANFLWI 318
           + + +  + R    L++
Sbjct: 300 LQLSQGQVRRFNQRLYL 316


>gi|297250385|ref|ZP_06864202.2| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768]
 gi|296839058|gb|EFH22996.1| tRNA(Ile)-lysidine synthase [Neisseria polysaccharea ATCC 43768]
          Length = 436

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 111/309 (35%), Gaps = 18/309 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             +      VA+SGG DS+ LL  L        F       + + H L   A     +  
Sbjct: 17  QGLNGKKTAVALSGGLDSVVLLHLLVRAGKKGGFIPKT---VHIHHGLSPRADAWADFCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + C  L +    V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET
Sbjct: 74  NYCDMLGVELETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIET 129

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +   L+ M     +  N  I RP L   R+DI  +  +  +   ED SN
Sbjct: 130 FMLAVARGGGLR--ALAAMPAVRPFGENGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESN 187

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           +D  + R R R  +    L  L  ++  F    +    A+   +     +  +    + +
Sbjct: 188 SDTAYLRNRFRHRI----LPELSAQIPHFGRHVLNNVRALQEDLALLDEIISQDCRWVCE 243

Query: 255 DILNIDSTLLFYLLRVSAAIC-----GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           +          + LR    I         I +P   ++  +   L   K G  ++    +
Sbjct: 244 EGSFDTVRWQTFSLRRKTHILRHFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFEL 303

Query: 310 DRRANFLWI 318
              A  L++
Sbjct: 304 HHYAGRLFV 312


>gi|312115987|ref|YP_004013583.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100]
 gi|311221116|gb|ADP72484.1| tRNA(Ile)-lysidine synthetase [Rhodomicrobium vannielii ATCC 17100]
          Length = 484

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 98/399 (24%), Positives = 170/399 (42%), Gaps = 21/399 (5%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +R    S+     +++AVSGG DSM L+       +  S      +  +VDH LR  + +
Sbjct: 43  IRKAFASVEASPALVLAVSGGPDSMALMHLARRWATLASRQAATITVATVDHGLRPESAE 102

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           E  +V      L   H  + W   KP  GL AAAR ARYAL++  A+   A+ ++TAHT 
Sbjct: 103 EATFVKAHARALGFEHVTLVWSGEKPSAGLQAAARRARYALLTAQARVNGAS-LLTAHTR 161

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET+ MR  R     G+        +     + + RP L   +  + ++L  R++ +
Sbjct: 162 DDQAETLIMRLSRGSGVDGLSA---IAPVSGRDGVRLVRPLLGFSKTRLTAYLRARHVPF 218

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             DPSN +  FERVR+R  ++ +    +      L   +    R  ++ A    +  +  
Sbjct: 219 VRDPSNENTAFERVRLRLAMKALANAGVSKAALALSAARLGRSRAALDEAAERFLDGFFR 278

Query: 244 VHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
           V   +   I ++  + +   +   +L     + GG+   P    +ER++  L+S +    
Sbjct: 279 VSPLAHGEIDREAFDALPDEIALRVLARVLPLVGGRAEPPRMMRLERLLENLRS-RNSEA 337

Query: 303 SIGRVVIDRRANFLWITRAVRNL--PTLILYPEETTVWDGRYQFQNLSDS--------LI 352
           ++G  ++   A  L   R    +    L L P    +WD R+     + +        L 
Sbjct: 338 TLGGSLMIAAAGRLSFYREPGRMKPEPLFLEPRVAVLWDRRFLVSAPTAAACEGQVRPLG 397

Query: 353 QIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
           + G  ++RK     G+     + A  + P+      LLA
Sbjct: 398 EPGWTAWRKERKQLGLSAEANRLAALATPALWRVDKLLA 436


>gi|323701590|ref|ZP_08113262.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM
           574]
 gi|323533363|gb|EGB23230.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum nigrificans DSM
           574]
          Length = 475

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 135/314 (42%), Gaps = 26/314 (8%)

Query: 6   IESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E VR  +    +V P   ++V VSGG DS+ LL  L+ +   R    I      ++H  
Sbjct: 4   LEKVRAEIIRHKMVQPGDLVVVGVSGGPDSVALLHVLYCL---RDELGISLHVAHLNHMF 60

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R E A+++  +V D+ ++L I  +V    V     K       AAREARY    +  +  
Sbjct: 61  RGEEAEEDASFVQDLAAKLGIPCTVEERDVPAYARKNHLSSEVAAREARYRFFRDVLQAT 120

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + +  AH  DDQ E V M   R     G GL G+         ++I RP L  RR+DI
Sbjct: 121 GGSKLALAHHADDQAELVLMNILR-----GTGLKGLSGMWPVRDQVYI-RPMLEVRRKDI 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVK 229
             +    N+S+  D SN  + + R R+R+ +            +  +    K+ +D  + 
Sbjct: 175 EQYCHDHNLSFRIDSSNLKNIYLRNRIRQQLIPWLEKEYCPGLVPIISRMTKQIRDEEMF 234

Query: 230 VNN-AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
           + + AV       L+ H  +++   Q +L   + +   +LRV+     G      +  +E
Sbjct: 235 LESLAVQAYSQVVLSEHPAAVVLHRQKLLAQPTVMARRVLRVAWGRLRGNKQDLTFDHVE 294

Query: 289 RVMLFLKSGKRGCV 302
            ++  LK G    +
Sbjct: 295 NLINHLKGGGPERI 308


>gi|168218232|ref|ZP_02643857.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens NCTC 8239]
 gi|182379755|gb|EDT77234.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens NCTC 8239]
          Length = 469

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 24/318 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V  F++    +     +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR
Sbjct: 3   KKVIDFIKENSMIKNGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLR 59

Query: 64  ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118
             +   +  YV ++C  L I   V     +K           A RE RY    E     +
Sbjct: 60  GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I  AH  +DQ ET+ MR+ R    +G  L G+        +    RP L  RR++I 
Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            +    N++   D +N ++ + R ++R     F+ +     +   + +      K    +
Sbjct: 174 EYCEINNLNPRIDETNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFI 233

Query: 235 AMLIPKY---LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
              + K    L +     I I ++  N    LL  +++ +      + +    + ++ ++
Sbjct: 234 QEEVEKRFPKLCIKENHNILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293

Query: 292 LFLKSGKRGCVSIGRVVI 309
                G    ++I   VI
Sbjct: 294 ALKDKGTGKQINITNGVI 311


>gi|227552665|ref|ZP_03982714.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330]
 gi|257897412|ref|ZP_05677065.1| PP-loop family protein [Enterococcus faecium Com12]
 gi|227178194|gb|EEI59166.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecium TX1330]
 gi|257833977|gb|EEV60398.1| PP-loop family protein [Enterococcus faecium Com12]
          Length = 481

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L        F       + ++H LRE + +E  Y+   
Sbjct: 28  QKESRILAAVSGGVDSMVLLHLLLQAQRQIGF---SLGVVHINHQLREESAEEAAYLRSY 84

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  +   V  W+N   +T +  AAR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 85  CEKKNLPLYVSVWENPA-KTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGDDQIETVL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+     +     + RP L   +E++ ++  +  + + ED +N  
Sbjct: 144 MKIIRGGQL--STFSGIKGVQPFATG-RLVRPLLSFSKEELYAYAAESQLVYFEDQTNQL 200

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           M+ FQ    ++      +I K +   +   +   +D 
Sbjct: 201 LDVQRNRLRHLVVPQLKQENTQVMRHFQQFSQQI-QWADQVIQKCMGQLIEKEVEQLKDR 259

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 260 FQFSAEMI 267


>gi|312623036|ref|YP_004024649.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203503|gb|ADQ46830.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 456

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 137/335 (40%), Gaps = 28/335 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  +E V+  +     L     +L+  SGG DSM LL     +L  +    +  +   ++
Sbjct: 1   MEFLEKVKSNIEKYGMLEEGFKVLIGCSGGVDSMVLLDC---ILRLKDKYNLDITVAHLN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
           H LR  A D+ ++V ++C R  I         +K           A R ARY+   E A+
Sbjct: 58  HMLRPEADDDEKFVIEMCKRYNIKCITRKVDVAKLKKEKGLSEEEAGRNARYSFFYEVAE 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +N   I+  H  +D +ET ++   R    +G+         +  +   I+RP +   RE
Sbjct: 118 ELNIDRILLGHNKNDVVETFFLNLFRGSGLEGLA-------SVPPVRDIIARPLINISRE 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227
           +I  +    ++ +  D +N   +++R  VR  +  +         L+ ++  ++  ++  
Sbjct: 171 EIEEYAKLNSVPFVVDKTNFSLKYKRNIVRNEILPLIKEKFGESVLNTIFRTVEIIREES 230

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            ++         +Y+       +   +   N+ + L   ++++        IS    R +
Sbjct: 231 DQIEALAQKYFQEYVQKEDVYYVLNIEKAKNLPAFLRRRIIKIMLEYFNSTISYDMLREI 290

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322
           E +  FL SGK+       +V++++++ L   R  
Sbjct: 291 EDLF-FLLSGKKKVYK--DLVVEKQSDSLVFYRKA 322


>gi|262404577|ref|ZP_06081132.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC586]
 gi|262349609|gb|EEY98747.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. RC586]
          Length = 440

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 20/318 (6%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +++A+SGG DS  LL  L      R        A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            V+     C    I+  +   +        +   AREARY  +S++  +   TL++    
Sbjct: 64  WVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQYVDS--DTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG  LS M     +     ++RP L   R+DI ++ +Q+ +S
Sbjct: 122 ADDQLETFLLALKRGSGPKG--LSAMAAYTPFAQG-HLARPLLTVSRQDIEAYAMQKKLS 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  +  I L   +L +++      ++     +L+ + L   ++
Sbjct: 179 WVTDESNFDTRYERNFLRHHITPI-LTERWLSIRQAVQRSAELCAEQEVLLQELLADALK 237

Query: 248 SIIAISQDI----LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRG 300
             I     +    L   S      L + A     ++ +P  +  +++             
Sbjct: 238 RAITQDGGLSISTLAESSEASRRQL-IRAWFAHHRLPMPSRQHTDQLWHEVALASEDANP 296

Query: 301 CVSIGRVVIDRRANFLWI 318
            + + ++ + R    L +
Sbjct: 297 KLRLNQIEVRRFRQQLHL 314


>gi|146292467|ref|YP_001182891.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens CN-32]
 gi|145564157|gb|ABP75092.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens CN-32]
          Length = 465

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 144/340 (42%), Gaps = 22/340 (6%)

Query: 9   VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           V  F+ SL   A   +++A SGG DS  L   L      + +G++++  + V H L + A
Sbjct: 10  VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQYGELQYQLVYVHHGLSQHA 67

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
               ++         +   +   +  + P+  + A AR  RY  I +H    +  L++TA
Sbjct: 68  DAWAQHCITRGQHYGLPTIIEHVQVKQGPRMSIEAEARRMRYQAIEQHV--GSDDLLLTA 125

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQLET+ +  +R    KG+   G    ++  +     RP L   RE I ++     
Sbjct: 126 HHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQ---VRPLLDVSREHIEAYASANG 182

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           +   ED SN DD+++R  +R  +    L A +  +         +      +I   +++ 
Sbjct: 183 LVHIEDESNQDDKYDRNFLRLDIIPR-LKARWSSIATTASRSAFLCAEQQTVIDTEVSLR 241

Query: 246 MRSII----AISQDILNIDS----TLLFYLLRVSAAICGGQISLPGYRSMERV---MLFL 294
           + + +       Q + N++     T  +  L +   I     +LP +  + ++   +L  
Sbjct: 242 LPTWLTQAKFTQQTVFNLNGFDSLTPSWQALLLRGFIESQGFALPSFVQLNQIIHQLLNA 301

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
           K   +  + +G   + R AN L++    +++ +   Y ++
Sbjct: 302 KDDAKVLIRVGDCALRRFANQLYLEHYSKHVKSSTEYAKK 341


>gi|18311454|ref|NP_563388.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens str. 13]
 gi|61216685|sp|Q8XHL1|TILS_CLOPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|18146138|dbj|BAB82178.1| probable cell-cycle protein [Clostridium perfringens str. 13]
          Length = 469

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 127/318 (39%), Gaps = 24/318 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V  F++    +     +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR
Sbjct: 3   KKVIDFIKENSMIKSGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLR 59

Query: 64  ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118
             +   +  YV ++C  L I   V     +K           A RE RY    E     +
Sbjct: 60  GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I  AH  +DQ ET+ MR+ R    +G  L G+        +    RP L  RR++I 
Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            +    N++   D +N ++ + R ++R     F+ D     +   + +      K    +
Sbjct: 174 EYCEINNLNPRIDETNLEEIYSRNKIRLKAIPFIEDNFNPDIVATLNRLAYSCSKDVEFI 233

Query: 235 AMLIPKY---LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
              + K    L +     I I ++  N    LL  +++ +      + +    + ++ ++
Sbjct: 234 QEEVEKRFPKLCIKENHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293

Query: 292 LFLKSGKRGCVSIGRVVI 309
                G    ++I   VI
Sbjct: 294 ALKDKGTGKQINITNGVI 311


>gi|145636327|ref|ZP_01791996.1| putative cell cycle protein MesJ [Haemophilus influenzae PittHH]
 gi|145270492|gb|EDK10426.1| putative cell cycle protein MesJ [Haemophilus influenzae PittHH]
          Length = 301

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 12/245 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L+A+SGG DS  LL     +   +   +I    AI + H L   A    ++  ++C + +
Sbjct: 20  LIALSGGLDSTVLLSLFAKLRQKQPHLQILSLRAIHIHHGLSPNADSWAKHCQNLCDQFQ 79

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   +   +  K   G+ A AREARY  I +H +T    +++TAH  +DQ ET ++  +R
Sbjct: 80  IPLIIERVQVDK-TNGIEAGAREARYQAIKKHLQTQ--EVLVTAHHLNDQTETFFLALKR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+G       +     + I RP L   R  +  +  +  ++W  D SN D+RF+R
Sbjct: 137 GSGLQGLGAMQQQSVLF---GMPIFRPLLGFTRPQLEDYAKKEKLNWITDESNEDNRFDR 193

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
             +R  +    L  L  +   F DL V+ +        + +   +    A    I N   
Sbjct: 194 NFLRNEI----LPELRARWAYF-DLAVQRSAQHCFEQQQLINDLLSEAFAEHCQIKNQFK 248

Query: 262 TLLFY 266
            L F 
Sbjct: 249 LLQFR 253


>gi|149192143|ref|ZP_01870364.1| cell cycle protein MesJ [Vibrio shilonii AK1]
 gi|148834013|gb|EDL51029.1| cell cycle protein MesJ [Vibrio shilonii AK1]
          Length = 437

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 140/386 (36%), Gaps = 21/386 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
             V    I+V  SGG DS  LL          S   I   A+ V H L + A +      
Sbjct: 14  QKVMHGKIIVGFSGGVDSRVLLRLAARYSKQHS---ITCLAVHVHHGLSDNANEWQVQCE 70

Query: 75  DVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                  +  +      S+     L   AR+ARY  + +H ++    +++T    DDQ E
Sbjct: 71  RWAQEEAVEFTCERVTLSQDSGESLEQLARQARYQALRQHMQS--GDILLTGQHLDDQAE 128

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +  +R    KG  LS M  ++ +     + RP L   R DI  +     + W ED S
Sbjct: 129 TMLLALKRGSGPKG--LSSMASSMNFGSG-RLVRPLLNIARHDIERYAQHEQLQWVEDES 185

Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N+D RF+R  +R+ V  +      +    + +   L  K    +  L+   L V M    
Sbjct: 186 NSDTRFDRNFLRQSVLPVLNQRWPSFAKAVSRSARLCAKQERLIKELLLPELEVCMNEFQ 245

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGCVSIGRV 307
            +S   ++  S L    L     +      +P    +R + + +   K      +++   
Sbjct: 246 GLSISTMSSHSILKREQLLR-LWLEANTSLMPTEVQFRKIWQEVALAKQDANPEMNLAGG 304

Query: 308 VIDRRANFLWI---TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            I R    L+     + V +     L  +   + D     + +S S  +    +  +  +
Sbjct: 305 AIRRAQGHLYWVEAYKGVSDWQQSWLDKDTLVLPDNLGVLKLVSPS--KDAKMTLDRQTL 362

Query: 365 PSGIPPIIAQRALSSMPSKEGGKPLL 390
              +  I     LS+ P    G   L
Sbjct: 363 NRSLKVIFNPEGLSAHPHGRAGSRKL 388


>gi|319425769|gb|ADV53843.1| tRNA(Ile)-lysidine synthetase [Shewanella putrefaciens 200]
          Length = 465

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 72/340 (21%), Positives = 143/340 (42%), Gaps = 22/340 (6%)

Query: 9   VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           V  F+ SL   A   +++A SGG DS  L   L      + +G++++  + V H L + A
Sbjct: 10  VSVFLDSLKLKAGRKLVLAYSGGVDSEVLAYCLSKYA--KQYGELQYQLVYVHHGLSQHA 67

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
               ++         +   +   +    P+  + A AR  RY  I +H    +  L++TA
Sbjct: 68  DAWAQHCITRGQHYGLPTIIEHVQVKLGPRMSIEAEARRMRYQAIEQHV--GSDDLLLTA 125

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQLET+ +  +R    KG+   G    ++  +     RP L   RE I ++     
Sbjct: 126 HHEDDQLETILLALKRGQGPKGLAAMGQIQPLMQGIQ---VRPLLDVSREHIEAYASANG 182

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           +   ED SN DD+++R  +R  +    L A +  +         +      +I   +++ 
Sbjct: 183 LVHIEDESNQDDKYDRNFLRLDIIPR-LKARWSSIATTASRSAFLCAEQQTVIDTEVSLR 241

Query: 246 MRSII----AISQDILNIDS----TLLFYLLRVSAAICGGQISLPGYRSMERV---MLFL 294
           + + +       Q + N++     T  +  L +   I     +LP +  + ++   +L  
Sbjct: 242 LPTWLTQAKFTQQTVFNLNGFDSLTPSWQALLLRGFIESQGFALPSFVQLNQIIHQLLNA 301

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
           K   +  + +G   + R AN L++    +++ +   Y ++
Sbjct: 302 KDDAKVLIRVGDCALRRFANQLYLEHYSKHVKSSTEYAKK 341


>gi|154252572|ref|YP_001413396.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1]
 gi|154156522|gb|ABS63739.1| tRNA(Ile)-lysidine synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 443

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 94/395 (23%), Positives = 163/395 (41%), Gaps = 20/395 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     I +A SGG DS+ LLI        R    I   A +VDH LR  +  E +  + 
Sbjct: 27  LKPSKKIAIAFSGGPDSLALLILAAEWAKKRR--GISLVAFTVDHGLRAASAAEAKAAAR 84

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +   L + H  + W+  KP  G+ AAAR+ARYAL+    ++  A  ++ AH  +DQ ET 
Sbjct: 85  LSDELGVPHRTLKWRGVKPAKGIQAAARDARYALLLAACRSFGAGDLLVAHHLEDQAETF 144

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            +R  R     G+        +  +   + + RP +   R  + + + +  ++   DPSN
Sbjct: 145 LLRLARGSGVDGLAAMPRARPLSDEEPAVRLLRPLIDLPRSRLLATVARAGLTAIHDPSN 204

Query: 195 TDDRFERVRVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            ++RF+RV+ R+ +  +         L    +     R+ + +  A L+  +  +     
Sbjct: 205 ENERFDRVKARKALALLAPLGLDAARLARTAEHMARARLALEDETAALLRTHAVLSSFGH 264

Query: 250 IAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRV 307
           + I+    L   + +   +L     I GG    P    +E V     +G  G   ++  V
Sbjct: 265 VEINMAAFLAAPAEIGLRVLGALCRIVGGGGYGPRMEGLEEVYQAAGTGTLGKGRTLHGV 324

Query: 308 VIDRRANFLWITRA---VRNLPTLILYPEETTVWDGRYQFQ---NLSDSLIQIGPQSYR- 360
            +      L  TR     +  P +IL   E  +WD R+  +       ++ ++       
Sbjct: 325 KLAASRGSLVATRELEAAKKSPAIILKAGEEGLWDRRFDIRLKKAPRGAVYEVRALGSNG 384

Query: 361 -KADVPSGIPPIIAQRA-LSSMPSKEG-GKPLLAP 392
             A   +GIP    QR+ L  +P     G+  +AP
Sbjct: 385 LAALKAAGIPLPKGQRSILLPLPGLWREGRLAIAP 419


>gi|119383441|ref|YP_914497.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222]
 gi|119373208|gb|ABL68801.1| tRNA(Ile)-lysidine synthetase [Paracoccus denitrificans PD1222]
          Length = 409

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 100/406 (24%), Positives = 159/406 (39%), Gaps = 21/406 (5%)

Query: 1   MFLSPIES-VRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M   P+ + V   +  L      + +A+SGG DS  L+   H       +G+ +  A +V
Sbjct: 1   MTAEPVAARVHAALDRLAGHRPTLGIALSGGGDSTALMHLAH------GWGRARLLAATV 54

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH LR  + DE R      + L I H  + W   +    LMAAAREAR  L++  A    
Sbjct: 55  DHGLRPGSADEARQAGLAAAALDIPHETLRWTR-RGGGNLMAAAREARLQLLAGWAGRHG 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + ++  HT DDQ ET+ MR  R     G+        +     +   RP L   R D+R
Sbjct: 114 LSAVLLGHTLDDQAETLLMRLNRGAGVDGLSAM---APMREAFGVTWLRPMLEIGRADLR 170

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAM 236
            +L  R + W +DPSN ++ FERVRVR+ +  +DL    L          R  + +  + 
Sbjct: 171 HWLAARGLGWADDPSNENEDFERVRVRKAIAALDLPMRQLAQSAANLAMARDALCDFASR 230

Query: 237 LIPKYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
           +            +A+  D        +   LL       GG    P    +   +  L+
Sbjct: 231 VAEG--AQSRAGSLALPLDAFRAAPLEIRRRLLVAGLRFVGGSDYPPRRGPLLHALAVLE 288

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
            G  G +++  V+ + R  FLW+ R                +WD R+Q   L     Q+ 
Sbjct: 289 DG--GRLTLEGVIAEPRDGFLWLVREPAAALRSPAAEGADAIWDRRWQVAGLRPGD-QVR 345

Query: 356 PQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKF 400
              +            + +   ++ P    G  L+ AP  R    +
Sbjct: 346 ALGHEPLPGFDWRGAGLMRDEAAASPGIWAGDRLIAAPVLRPAPGY 391


>gi|257888633|ref|ZP_05668286.1| PP-loop family protein [Enterococcus faecium 1,141,733]
 gi|293378830|ref|ZP_06624985.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1]
 gi|257824687|gb|EEV51619.1| PP-loop family protein [Enterococcus faecium 1,141,733]
 gi|292642371|gb|EFF60526.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium PC4.1]
          Length = 484

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L        F       + ++H LRE + +E  Y+   
Sbjct: 31  QKESRILAAVSGGVDSMVLLHLLLQAQRQIGF---SLGVVHINHQLREESAEEAAYLRSY 87

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  +   V  W+N   +T +  AAR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 88  CEKKNLPLYVSVWENPA-KTAIETAARNFRYQAFTRVMEEGQYDTLMTAHHGDDQIETVL 146

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+     +     + RP L   +E++ ++  +  + + ED +N  
Sbjct: 147 MKIIRGGQL--STFSGIKGVQPFATG-RLVRPLLSFSKEELYAYAAESQLVYFEDQTNQL 203

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           M+ FQ    ++      +I K +   +   +   +D 
Sbjct: 204 LDVQRNRLRHLVVPQLKQENTQVMRHFQQFSQQI-QWADQVIQKCMGQLIEKEVEQLKDR 262

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 263 FQFSAEMI 270


>gi|261876168|ref|YP_697160.2| tRNA(Ile)-lysidine synthetase [Clostridium perfringens ATCC 13124]
 gi|281185487|sp|Q0TMI0|TILS_CLOP1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|255529904|gb|ABG82412.2| tRNA(Ile)-lysidine synthetase [Clostridium perfringens ATCC 13124]
          Length = 469

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 24/318 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V  F++    +     +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR
Sbjct: 3   KKVIDFIKENSMIKNGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLR 59

Query: 64  ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118
             +   +  YV ++C  L I   V     +K           A RE RY    E     +
Sbjct: 60  GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I  AH  +DQ ET+ MR+ R    +G  L G+        +    RP L  RR++I 
Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            +    N++   D +N ++ + R ++R     F+ +     +   + +      K    +
Sbjct: 174 EYCEINNLNPRIDETNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFI 233

Query: 235 AMLIPKY---LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
              + K    L +     I I ++  N    LL  +++ +      + +    + ++ ++
Sbjct: 234 QEEVEKRFPKLCIKENHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293

Query: 292 LFLKSGKRGCVSIGRVVI 309
                G    ++I   VI
Sbjct: 294 ALKDKGTGKQINITNGVI 311


>gi|257899971|ref|ZP_05679624.1| PP-loop family protein [Enterococcus faecium Com15]
 gi|257837883|gb|EEV62957.1| PP-loop family protein [Enterococcus faecium Com15]
          Length = 481

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 8/251 (3%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R     + IL AVSGG DSM LL  L        F       + ++H LRE + +E  Y+
Sbjct: 25  RFWQKESRILAAVSGGVDSMVLLHLLLQAQRQIGF---SLGVVHINHQLREESAEEAAYL 81

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C +  +   V  W++   +T +  AAR  RY   +   +      +MTAH  DDQ+E
Sbjct: 82  RSYCEKKNLPLYVSVWEDPA-KTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGDDQIE 140

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV M+  R         SG+ +   +     + RP L   +E++ ++  +  + + ED +
Sbjct: 141 TVLMKIIRGGQL--STFSGIKEVQPFATG-RLVRPLLSFSKEELYAYAAESQLVYFEDQT 197

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N     +R R+R  V           M+ FQ    ++      +I K +   +   +   
Sbjct: 198 NQLLDVQRNRLRHLVVPQLKQENTQVMRHFQQFSQQI-QWADQVIQKCMGQLIEKEVEQL 256

Query: 254 QDILNIDSTLL 264
           +D     + ++
Sbjct: 257 KDRFQFSAEMI 267


>gi|168206867|ref|ZP_02632872.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens E str.
           JGS1987]
 gi|168211206|ref|ZP_02636831.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens B str. ATCC
           3626]
 gi|170661729|gb|EDT14412.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens E str.
           JGS1987]
 gi|170710765|gb|EDT22947.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens B str. ATCC
           3626]
          Length = 469

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 121/303 (39%), Gaps = 21/303 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVC 77
              +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR  +   +  YV ++C
Sbjct: 18  GDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEELC 74

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             L I   V     +K           A RE RY    E     +   I  AH  +DQ E
Sbjct: 75  KNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQAE 134

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR+ R    +G  L G+        +    RP L  RR++I  +    N++   D +
Sbjct: 135 TLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIEEYCEINNLNPRIDET 188

Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY---LTVHM 246
           N ++ + R ++R     F+ +     +   + +      K    +   + K    L +  
Sbjct: 189 NLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFIQEEVEKRFPKLCIKE 248

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
              I I ++  N    LL  +++ +      + +    + ++ ++     G    ++I  
Sbjct: 249 NHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDIIALKDKGTGKQINITN 308

Query: 307 VVI 309
            VI
Sbjct: 309 GVI 311


>gi|262170788|ref|ZP_06038466.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus MB-451]
 gi|261891864|gb|EEY37850.1| tRNA(Ile)-lysidine synthetase [Vibrio mimicus MB-451]
          Length = 440

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 22/319 (6%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +++A+SGG DS  LL  L      R        A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            V+     C    I+  +   +        +   AREARY  +S+H  +   TL++    
Sbjct: 64  WVQDCQTWCQAANISCHIERVQLAVGSGESIEKMAREARYQALSQHVDS--DTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG  LS M     +    +++RP L   R+DI ++ +Q+ +S
Sbjct: 122 ADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQG-YLARPLLTVSRQDIEAYAMQKKLS 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  +  + L   +  +++      ++     +L+ + L   ++
Sbjct: 179 WVTDESNLDTRYERNFLRHHITPV-LAERWPSIRQAVQRSAELCAEQEVLLQELLADALK 237

Query: 248 SIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I  +       +          L+R   A    ++ +P  +  +++            
Sbjct: 238 RAITQNGGLSIPTLAESSEASRRQLIRAWFAH--HRLPMPSRQHTDQLWYEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWI 318
             + + ++ + R    L +
Sbjct: 296 PKLRLNQIEVRRFRQQLHL 314


>gi|188584721|ref|YP_001916266.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349408|gb|ACB83678.1| tRNA(Ile)-lysidine synthetase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 509

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 68/288 (23%), Positives = 117/288 (40%), Gaps = 31/288 (10%)

Query: 12  FVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE- 69
           F + L+     +LV VSGG DS+ LL  L+ +  +  F   K     ++H  R+ + +E 
Sbjct: 10  FEKGLIKSGDKVLVGVSGGPDSVALLHVLYELRQELQF---KLVVSHLNHGFRDKSAEED 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTA 125
             +V  +   L +      W+        +      AR  RY    + AK   AT +   
Sbjct: 67  ADFVKKLAEDLELPIIYDKWQVKDYINYYKLSPQQGARIQRYKFFEQAAKDFGATKLALG 126

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ+ET ++R  R    +G  LSGM      + +L + RP L   + +I+ +L    
Sbjct: 127 HHIDDQVETFFLRLIRGAGTQG--LSGMQFIRKLNNDLLLIRPLLEVSKSEIKEYLQTNK 184

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           + +  DP+N +  + R +VR  +  +           FQD+   +N  +         + 
Sbjct: 185 LKYKIDPTNQETNYLRNKVRHEILPV-----------FQDINPNINERL---------LE 224

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
              ++    D LN  +  L+   +V             Y+  ER +LF
Sbjct: 225 TMELLKEENDYLNKAANELYQKSQVDTGRSQNNTKPLAYQGQERELLF 272


>gi|217076557|ref|YP_002334273.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
           africanus TCF52B]
 gi|226695550|sp|B7IFR8|TILS_THEAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|217036410|gb|ACJ74932.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho
           africanus TCF52B]
          Length = 427

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 129/300 (43%), Gaps = 27/300 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  IE       +      ILVAVSGG DS  LL  L  V     + K      +VDH 
Sbjct: 8   FIQKIEEYNLIEEN----DRILVAVSGGVDSSVLLNLLARVQE---YFKFSIFCATVDHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           +R+ +K+EV++V ++   L +   +  +       + +  +  AAR+ RY  ++E AK I
Sbjct: 61  IRKESKEEVKFVYNMAQSLNVECFIKEFDVPLYAKENKLSIEEAARKLRYKFLNEIAKKI 120

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           NA  + TAH  +D  ETV  R  R       G+ GM        N  I RP L   R++I
Sbjct: 121 NANKVATAHNLNDLAETVLFRLARGTGP--FGIYGMK-----PRNGNIIRPLLFFERKEI 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--DLHALYLKM-KKFQDLRVKVNNAV 234
             F  +  I +  D +N D ++ R  +R  +  I  +++ L+ +   +F +   ++++ V
Sbjct: 174 EQFATENKIPFVVDKTNFDTKYTRNFIRHKIIPIFKEINPLFEQAVLRFVENVWELDSFV 233

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
              +    T      I      +  D  +L   +R       G+   P    ++R+   L
Sbjct: 234 KDKL-NVETFEFEGRIFFK---VPKDEYILVEFIRRKTMEHFGRA--PDKEKLDRLKKNL 287


>gi|289433574|ref|YP_003463446.1| hypothetical protein lse_0205 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169818|emb|CBH26356.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 648

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 24/295 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L          K   S   ++H LRE A  E   V + C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---QMSNLVPKKAISVAHLNHGLRENAIKEQLIVRNYC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + +I   +      K     Q G+   AR ARY    +     N   ++ AH  DDQ+E
Sbjct: 77  EKHKIPFFIEEVNVKKRAETMQKGIEETARLARYEFFEKIMAEENINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  +   +G SG+           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKRSMRGGQAI-RPFLSITKAEIIDYANRHELTYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS-- 248
           N+  ++ R R R+ +      +   +Y   ++F +   +    +  L    L  ++    
Sbjct: 194 NSSPKYTRNRYRKEILPFLTKENPGVYAHFERFSEETSEDFRYLEDLASDLLKKNLIKNG 253

Query: 249 ------IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
                 + +   +   +    +  LLR       G I+      + +++  ++S 
Sbjct: 254 EQATLLLTSFKNEANPLQRRAIHLLLRYLYNKDAGLITA---NHIYQIIQMIQSD 305


>gi|168215140|ref|ZP_02640765.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens CPE str.
           F4969]
 gi|170713441|gb|EDT25623.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens CPE str.
           F4969]
          Length = 469

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 69/304 (22%), Positives = 122/304 (40%), Gaps = 21/304 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDV 76
               +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR  +   +  YV ++
Sbjct: 17  SGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEEL 73

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  L I   V     +K           A RE RY    E     +   I  AH  +DQ 
Sbjct: 74  CKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ MR+ R    +G  L G+        +    RP L  RR++I  +    N++   D 
Sbjct: 134 ETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIEEYCEINNLNPRIDE 187

Query: 193 SNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY---LTVH 245
           +N ++ + R ++R     F+ +     +   + +      K    +   + K    L + 
Sbjct: 188 TNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFIQEEVEKRFPKLCIK 247

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
               I I ++  N    LL  +++ +      + +    + ++ +++    G    ++I 
Sbjct: 248 ENHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDIIVLKDKGTGKQINIT 307

Query: 306 RVVI 309
             VI
Sbjct: 308 NGVI 311


>gi|293571076|ref|ZP_06682117.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980]
 gi|291608859|gb|EFF38140.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E980]
          Length = 484

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 8/251 (3%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R     + IL AVSGG DSM LL  L        F       + ++H LRE + +E  Y+
Sbjct: 28  RFWQKESRILAAVSGGVDSMVLLHLLLQAQRQIGF---SLGVVHINHQLREESAEEAAYL 84

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C +  +   V  W++   +T +  AAR  RY   +   +      +MTAH  DDQ+E
Sbjct: 85  RSYCEKKNLPLYVSVWEDPA-KTAIETAARNFRYQAFTRVMEEEQYDTLMTAHHGDDQIE 143

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV M+  R         SG+ +   +     + RP L   +E++ ++  +  + + ED +
Sbjct: 144 TVLMKIIRGGQL--STFSGIKEVQPFATG-RLVRPLLSFSKEELYAYAAESQLVYFEDQT 200

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N     +R R+R  V           M+ FQ    ++      +I K +   +   +   
Sbjct: 201 NQLLDVQRNRLRHLVVPQLKQENTQVMRHFQQFSQQI-QWADQVIQKCMGQLIEKEVEQL 259

Query: 254 QDILNIDSTLL 264
           +D     + ++
Sbjct: 260 KDRFQFSAEMI 270


>gi|315127141|ref|YP_004069144.1| lysidine forming enzyme [Pseudoalteromonas sp. SM9913]
 gi|315015655|gb|ADT68993.1| lysidine forming enzyme [Pseudoalteromonas sp. SM9913]
          Length = 436

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/329 (24%), Positives = 149/329 (45%), Gaps = 19/329 (5%)

Query: 1   MFLSPI-ESVRFFVRSLVYPAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  +PI   V+  +   +        VA+SGG DS+ LL  +H++       ++  SAI 
Sbjct: 1   MHKTPIYLQVKKALNHYLENGQFTFTVALSGGVDSVVLLQVMHALKQQC--PQLDLSAIY 58

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKT 116
           V+H L + A    ++    C +L I     +     K +T + A AREARY  + EH  +
Sbjct: 59  VNHGLSDNAHHWRQFCHARCEQLSIDFKAANVIIEPKSRTSIEAQAREARYQALDEH--S 116

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            + ++I+     +DQ+ET  +R +R    KG+G   M  T + +      RP L  +R D
Sbjct: 117 PSDSVILLGQHLNDQVETFLLRLKRGSGLKGLG--AMQQTRVLESGRECYRPLLGVKRSD 174

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I +F  Q NIS   D SN+++RF+R  +R+ +    L   +   ++     +++      
Sbjct: 175 IEAFAQQFNISHITDESNSNERFDRNFLRQQIVP-KLAERFTGFEQCTARSIELLQQQQA 233

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG----QISLPGYRSMERVM- 291
           L+ +Y    +   I   Q  LNI +   +  +R++  +         ++P  + + ++M 
Sbjct: 234 LLDEYTQQDLAQCINQHQ-ALNIQNMAHYSAIRIANLLRAWLALFTHTMPSQKQLMQIMS 292

Query: 292 --LFLKSGKRGCVSIGRVVIDRRANFLWI 318
             +  K+  +  + +    I R   +L+ 
Sbjct: 293 QAIHAKADAQMVIELSDGQIRRHQGYLYF 321


>gi|259047954|ref|ZP_05738355.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella
           adiacens ATCC 49175]
 gi|259035374|gb|EEW36629.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Granulicatella
           adiacens ATCC 49175]
          Length = 457

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 135/332 (40%), Gaps = 21/332 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
               ++AVSGG DSM LL A+  +  D +   I      V++ LR  + DE + V   C 
Sbjct: 18  HQKYVLAVSGGVDSMVLLNAMALLFEDHAKDHI--VVAHVNYGLRAQSMDEEQLVRRFCK 75

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             +I   + ++K +K +    +  R  RY    E  K   A  ++ AH  DDQLET+ M+
Sbjct: 76  SRQIPFEIKNFKETKEEKASESILRNFRYEFFEEVLKKHQAHYLVVAHHQDDQLETILMK 135

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +G  LSGM +       + I RPFL   ++++        + + ED SN  D 
Sbjct: 136 WSRGSTLEG--LSGMKEIRQV-KGMTILRPFLSLNKKELYQEAETHQVPYLEDESNESDN 192

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI------PKYLTVHMRSIIAI 252
           + R R R  V              FQ     + +AVA L+       + L    +  +  
Sbjct: 193 YTRNRYRHHVVPFLKEENPNAGSHFQKSAQMIADAVACLMPILEEKQELLFQKGKKRVLF 252

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI----GRVV 308
            ++    +   +  LL     I     +      ME+++  + S K   +++    G   
Sbjct: 253 HREAFLKEPVEMQRLLLQQVLI--QMDTTISVVQMEQILEKIGSNK-AQLTLDLSNGWKF 309

Query: 309 IDRRANFLWIT---RAVRNLPTLILYPEETTV 337
             R    L+     R V N+  ++  PE+T +
Sbjct: 310 KKRYEECLFEKGRPRVVPNIEYVLSKPEDTLI 341


>gi|182626023|ref|ZP_02953786.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens D str.
           JGS1721]
 gi|177908730|gb|EDT71241.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens D str.
           JGS1721]
          Length = 469

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 127/318 (39%), Gaps = 24/318 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V  F++    +     +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR
Sbjct: 3   KKVIDFIKENSMIKNGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLR 59

Query: 64  ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118
             +   +  YV ++C  L I   V     +K           A RE RY    E     +
Sbjct: 60  GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I  AH  +DQ ET+ MR+ R    +G  L G+        +    RP L  RR++I 
Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            +    N++   D +N ++ + R ++R     F+ +     +   + +      K    +
Sbjct: 174 EYCEINNLNPRIDETNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFI 233

Query: 235 AMLIPKY---LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
              + K    L +     I I ++  N    LL  +++ +      + +    + ++ ++
Sbjct: 234 QEEVEKRFPKLCIKENHSILIKEEAFNEKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293

Query: 292 LFLKSGKRGCVSIGRVVI 309
                G    ++I   +I
Sbjct: 294 ALKDKGTGKQINITNGII 311


>gi|253681327|ref|ZP_04862125.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873]
 gi|253562565|gb|EES92016.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum D str. 1873]
          Length = 462

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 123/305 (40%), Gaps = 24/305 (7%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           IE V   ++          ++VAVSGG DS+ LL  L+ +   R    I   A  ++HCL
Sbjct: 2   IEKVIHTIKQNNMFEVGDKVVVAVSGGPDSICLLHILYKL---REKIGISIVAAHINHCL 58

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R E A  +  YV   C  L I   V    V   +         A RE RY   SE    +
Sbjct: 59  RGEEADKDEEYVRKFCENLNIQCFVKKEDVHKISKDRGISCEMAGREVRYDFFSEVLNNV 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I  AH  +DQ ET+ MR  R     G GL G+        N++  RP +   R++I
Sbjct: 119 RANKIAVAHNANDQAETILMRMLR-----GTGLEGLIGIRAVRDNIF-VRPIIDITRDEI 172

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNA 233
             +    N++   D +N ++ + R ++R  +           +   + +F D     N+ 
Sbjct: 173 EDYCYVNNLNPRIDKTNLENIYTRNKIRLELIPYIQKNFNSDVIEVLNRFSDTVKIDNDY 232

Query: 234 VAMLIPKYLTVHMRSI---IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           +  +  +    + +     + I +++      +L  ++R++     G ++      +  +
Sbjct: 233 LNKVSLEKYNKYCKGEKDKVIIKEEVFKEHEAILTRVIRMALKELKGNLNNFDKGHIYDI 292

Query: 291 MLFLK 295
           +   K
Sbjct: 293 IDIQK 297


>gi|294678709|ref|YP_003579324.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003]
 gi|294477529|gb|ADE86917.1| tRNA(Ile)-lysidine synthase [Rhodobacter capsulatus SB 1003]
          Length = 429

 Score =  226 bits (576), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 110/416 (26%), Positives = 179/416 (43%), Gaps = 28/416 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + L   E+    VR+ +    + VAVSGGSDS+  L+ L ++           +A++VDH
Sbjct: 22  LLLWAAEAAVETVRTRMTAPRLAVAVSGGSDSLATLVLLSALHP--------VAAVTVDH 73

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  A  E   V   C+   I HS++ W     +  LM AAR AR  LI   A+     
Sbjct: 74  GLRPEAAAEAEVVGQFCAERGIDHSILRWDGRGARGNLMDAARRARLRLIGAWAQDRGIG 133

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +   HT DDQ ET  MR  R+   +G  LSGM ++   +  LW  RPFL   R ++R  
Sbjct: 134 AVALGHTGDDQAETFLMRLAREAGLEG--LSGMRESFESEGVLW-FRPFLSQTRAELRGH 190

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVA 235
           L ++ I W EDPSN +DRF+RV+ R+ +       I    L   +         V  ++ 
Sbjct: 191 LQRQGIGWIEDPSNENDRFDRVKARKALAALAPLGITAGKLSTVVGHLAMAEQSVLWSLD 250

Query: 236 MLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
            LI  ++      ++  +Q   +  D      LL  +     G    P    +  V+   
Sbjct: 251 HLIAAHVRFDAGDVVIDAQGFRDAFDPETGRRLLNAALVWVSGSYYPPRAVQVIDVLTTW 310

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS---L 351
           ++ +    ++    I      + ITR  R +  L L   +  VWDG ++ +        L
Sbjct: 311 RTRRDR--TLHGCRILVGDEAIRITREARAVAALRLPFGQ--VWDG-WRIEGPDRPGLML 365

Query: 352 IQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAY 406
             +G +  R+  +  G      + +L + P+   G+ LL AP + +   ++  +  
Sbjct: 366 AALGAEGLRQ--LGEGCSRARPRASLLASPAVWQGETLLAAPVAGWKNGYEARLVR 419


>gi|239825646|ref|YP_002948270.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70]
 gi|239805939|gb|ACS23004.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. WCH70]
          Length = 462

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 132/360 (36%), Gaps = 34/360 (9%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I  V  F++    L   + ++V VSGG DS+ LL   H   S R    I   A  VDH  
Sbjct: 2   IAEVYEFIKKHELLTPNSTVIVGVSGGPDSLALL---HFFWSIRQEWNITLIAAHVDHMF 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTI 117
           R   +++++ +V   C+   I    V         + + G+  AAR+ RY    E  K  
Sbjct: 59  RGKQSEEDMNFVKHFCAARGIICEAVQMDVPAFQRESKLGVQEAARQCRYRFFGELMKKY 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    KG   +G+     +    +I RPFL   R DI
Sbjct: 119 KAHYLALGHHGDDQVETILMRLVRGSTSKGY--AGIPAKRPF-YGGYIIRPFLAISRADI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAV 234
            ++  Q  I+   D SN  D + R R R  V      +   L+ + + + ++ ++    +
Sbjct: 176 DAYCRQHQITPRHDASNDKDDYTRNRFRHHVIPFLKKENPRLHERFQSYSEMVMEDELFL 235

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL-----PGYRSMER 289
             L    +   M          +     +   L R    +    +            +  
Sbjct: 236 EELAKDAMNKVMEKQHDTVALKIEPFQAMPKPLQRRGIQLILNYLYKDIPSSLSSVHIHN 295

Query: 290 VMLFLKSGK---RGCVSIGRVVIDRRANFLWITRAVR---------NLPTLILYPEETTV 337
           +  FL       R     G  VI      L+  R  +         ++P ++  P    +
Sbjct: 296 IFTFLNRDHPSGRLDFPHGLKVIRSYDRCLFTFREEKEDISYAFELDIPAVLPLPNNHVI 355


>gi|110802414|ref|YP_699728.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens SM101]
 gi|110682915|gb|ABG86285.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens SM101]
          Length = 469

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 128/318 (40%), Gaps = 24/318 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V  F++    +     +LVA+SGG DS+ LL  L  +   +    I+  A  V+HCLR
Sbjct: 3   KKVIDFIKENSMIKSGDKVLVALSGGPDSVCLLHILSEL---KELLHIEVYAAHVNHCLR 59

Query: 64  ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118
             +   +  YV ++C  L I   V     +K           A RE RY    E     +
Sbjct: 60  GESALKDEAYVEELCKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYS 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I  AH  +DQ ET+ MR+ R    +G  L G+        +    RP L  RR++I 
Sbjct: 120 LDKIAIAHNANDQAETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIE 173

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            +    N++   D +N ++ + R ++R     F+ +     +   + +      K    +
Sbjct: 174 EYCEINNLTPRIDETNLEEIYSRNKIRLKAIPFIEENFNPDIVNTLNRLAYSCSKDVEFI 233

Query: 235 AMLIPKYLT---VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
              + K  T   +   + I I ++  N    LL  +++ +      + +    + ++ ++
Sbjct: 234 QEEVEKRFTKLCIKENNSILIKEEAFNAKEALLTRIIKKALFEVSSKHNNFELKHIQDII 293

Query: 292 LFLKSGKRGCVSIGRVVI 309
                G    ++I   VI
Sbjct: 294 ALKDKGTGKQINITNGVI 311


>gi|302871264|ref|YP_003839900.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574123|gb|ADL41914.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 456

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 66/333 (19%), Positives = 134/333 (40%), Gaps = 28/333 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +S +E V+  +     L     +L+  SGG DSM LL  ++ +  + S   +  +   ++
Sbjct: 1   MSLMEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCMYRLKDEYS---LDITVAHLN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
           H LR  A D+ ++V ++C R  I         +K           A R ARY+   E AK
Sbjct: 58  HMLRPEADDDEKFVIEMCKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAK 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            I+   I   H  +D +ET ++   R  + +G+         +  +   I+RP +   RE
Sbjct: 118 EISIDRIFLGHNKNDVVETFFLNLFRGSSLEGLA-------SIPPVRDIIARPLINISRE 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA--------LYLKMKKFQDLR 227
           +I  F    NI +  D +N   +++R  VR  +  +            ++  ++  ++  
Sbjct: 171 EIEEFARVNNIPFVVDKTNYSLKYKRNIVRNEILPLIKERFGESVVSTIFRTIEIIREEN 230

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            ++         + +       I   +   N+   L   ++++        IS    + +
Sbjct: 231 DQIEELAHNFFQECVQKEDFYYILNIEKTKNLPVFLQRRIIKMILECFNSSISYDMMKEI 290

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
           E +   L SGK+       +V++++ + L   +
Sbjct: 291 EELFS-LSSGKKKVYK--NLVVEKQNDSLVFYK 320


>gi|78485607|ref|YP_391532.1| PP-loop [Thiomicrospira crunogena XCL-2]
 gi|123555425|sp|Q31G65|TILS_THICR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|78363893|gb|ABB41858.1| tRNA(Ile)-lysidine synthetase [Thiomicrospira crunogena XCL-2]
          Length = 420

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 125/326 (38%), Gaps = 16/326 (4%)

Query: 1   MFLSPIE-SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M    +E ++   +     P   LVA SGG DS  +L AL   +S +S       A+ ++
Sbjct: 1   MSYQKVELAISKLIHLYPSPVQFLVAFSGGLDSTVMLDALCKHVSPQS-----IHAVYIN 55

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTIN 118
           H L+  +          C RL +    V  + S   + G+ A AR+ RY  +    +   
Sbjct: 56  HGLQPESNQWADACKKACERLGVKFESVDVQVSDISRQGIEAVARQKRYEALYS--RVTK 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDI 177
            T+++TAH   DQ ET+ +   R     G+ G+  + +  L +  L   RP L    + I
Sbjct: 114 GTILLTAHHQRDQAETLLLNMARGAGISGLSGMPYVKNIQLNEQTLQHCRPLLNVDYDAI 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +S+  Q  + W ED SN +  + R  +R  V     HA       F      +N ++A+L
Sbjct: 174 QSYAKQYRLDWVEDSSNQELDYRRNYLRHEVLPKIRHAWPFSDANFAKSAHHLNESLALL 233

Query: 238 IP-KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG-----YRSMERVM 291
                + +             N+       L  ++       +S        Y+ ++  +
Sbjct: 234 NELAEIDLQHTDYTDFYLSFTNVKELRWSRLKNMTRYWTESYVSGLRLNAKIYQWLQECL 293

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLW 317
                  +  + + R  +    + L+
Sbjct: 294 NNKNPQAKPKMLLARGELRFYNHVLY 319


>gi|240115610|ref|ZP_04729672.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID18]
 gi|260440579|ref|ZP_05794395.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI2]
          Length = 411

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 112/313 (35%), Gaps = 14/313 (4%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+SGG DS+ LL  L        F      A+ + H L   A D   +  + C  L +  
Sbjct: 2   ALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCRNYCDMLGVGL 58

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
             V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET  +   R   
Sbjct: 59  ETVKVCVEKNGLGIEAAARQKRYAAFA----EKGFDVLALAHHRDDQIETFMLAVARGGG 114

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
            +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R 
Sbjct: 115 LR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRF 172

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDILNIDS 261
           R  +       +    +   +    +   +A+L     +       +    +   L    
Sbjct: 173 RHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYFDTARWLTFSP 232

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
               ++LR    +    I +P   ++  +   L   K G  ++    +   A  L++  +
Sbjct: 233 RRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHHYAGRLFVFAS 290

Query: 322 VRNLPTLILYPEE 334
            +      L    
Sbjct: 291 EQLAKPAFLKDGT 303


>gi|301300317|ref|ZP_07206524.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852090|gb|EFK79767.1| tRNA(Ile)-lysidine synthetase [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 452

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 13/297 (4%)

Query: 13  VRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           +R L +    +L+AVS G DSM LL  +  +        ++ +   +DH LRE +K+E +
Sbjct: 16  LRDLKISNKKVLLAVSTGVDSMVLLSGMLKLSK---VLDVEINVAYIDHQLREQSKEETK 72

Query: 72  YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++ + C    I   V  W K   P   + AAARE RY    +  K  N   ++TAH  DD
Sbjct: 73  FIKEFCFARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDD 132

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET  M+  R    +   L  +    ++  +  I RP L   +++I  +  Q  I + E
Sbjct: 133 QAETFLMKLIRGGNIQ--QLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKYLTVHMR 247
           D +N  D ++R R+R  +  +        +K       ++ N   A+  +    L    +
Sbjct: 191 DETNKSDDYQRNRLRHHIIPVLKAENPEFLKHVLGYTQQLTNNLQAIQEVADVKLNKISK 250

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                    +         LL     + G +I       +++++  L   K+    I
Sbjct: 251 EETLGYDKFVKESPLWQRILLERYLEVKGLEIK---ETQVQQILAMLNDKKKPQAKI 304


>gi|258621013|ref|ZP_05716047.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM573]
 gi|258586401|gb|EEW11116.1| tRNA(Ile)-lysidine synthase [Vibrio mimicus VM573]
          Length = 440

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 22/319 (6%)

Query: 11  FFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
            FV+ L       +++A+SGG DS  LL  L      R        A+ V H L   A  
Sbjct: 7   HFVQQLARYPFRKLVLALSGGVDSRVLLSLLAR---GRDEFGWDAEAVHVHHGLSSNADQ 63

Query: 69  EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             +     C    I+  +   +        +   AREARY  +S+H    + TL++    
Sbjct: 64  WAQDCQTWCQAANISCQIEHVQLAVGSGESIEKMAREARYQALSQHV--GSDTLLLLGQH 121

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET  +  +R    KG  LS M     +     ++RP L   R+DI ++ +Q+ +S
Sbjct: 122 ADDQLETFLLALKRGSGPKG--LSAMAAYAPFAQG-HLARPLLTVSRQDIEAYAMQKKLS 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W  D SN D R+ER  +R  +  + L   +  +++      ++     +L+ + L   ++
Sbjct: 179 WVTDESNFDIRYERNFLRHHITPV-LAERWPSIRQAVQRSAELCAEQEVLLQELLADALK 237

Query: 248 SIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             I          +          L+R   A    ++ +P  +  +++            
Sbjct: 238 RAITEDGGLSIPTLAESSEASRRQLIRAWFAH--HRLPMPSRQHTDQLWHEVALASEDAN 295

Query: 300 GCVSIGRVVIDRRANFLWI 318
             + + ++ + R    L +
Sbjct: 296 PKLRLNQIEVRRFRQQLHL 314


>gi|114565668|ref|YP_752822.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336603|gb|ABI67451.1| tRNA(Ile)-lysidine synthetase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 454

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 128/337 (37%), Gaps = 28/337 (8%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  VR ++   + L     +L+ VSGG DSM LL  +H + ++   G    + + ++H L
Sbjct: 2   LRKVREYIWEEKLLEPGKKVLLGVSGGPDSMALLHIMHKLTTEMDLG---LAVLHLNHGL 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           R  A  E  +V + C    I        +     + +  L  A R+ RY    E  + + 
Sbjct: 59  RPEAAAEEEFVREHCRNWGIDFYSRQADIRALALQEKKTLEEAGRDCRYRYFFEQLEELQ 118

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I TAH  DDQ ETV +   R    KG+         +      + RP L   + +I 
Sbjct: 119 ADYIATAHHQDDQAETVLLHLLRGSGLKGL-------RGIMPRKGQLLRPLLALSKAEII 171

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVKV 230
            +L +  I +C D SN D +F R R+R        +      + +L       +D    +
Sbjct: 172 HYLDENQIPYCLDQSNNDLKFLRNRIRCELIPYLQKAYNPRIMESLNQLAGIARDENDYL 231

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQI--SLPGYRSM 287
              +     K L      +I + +  L      L   L+  + A   G+    L   + +
Sbjct: 232 EKQLHFSWDKLLLWQEPGVIVLDKKALGEEHPALQKRLILEALARLRGESGWELKDVQRI 291

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
            R++    S K   +  G  V        +  R +R 
Sbjct: 292 LRLLDQSGSSKYIQLKQGLRVSSVYQELHFTNRPLRE 328


>gi|169343171|ref|ZP_02864192.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens C str.
           JGS1495]
 gi|169298723|gb|EDS80799.1| tRNA(Ile)-lysidine synthetase [Clostridium perfringens C str.
           JGS1495]
          Length = 469

 Score =  225 bits (575), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 123/305 (40%), Gaps = 23/305 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDV 76
               +LVA+SGG DS+ LL  L  +   R    I+  A  V+HCLR  +   +  YV ++
Sbjct: 17  SGDKVLVALSGGPDSVCLLHILSEL---RELLHIEVYAAHVNHCLRGESALKDEAYVEEL 73

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  L I   V     +K           A RE RY    E     +   I  AH  +DQ 
Sbjct: 74  CKNLNIKCFVKRVDINKISEEQNISTEMAGREERYKFFEELKNEYSLDKIAIAHNANDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ MR+ R    +G  L G+        +    RP L  RR++I  +    N++   D 
Sbjct: 134 ETLIMRALRGTGIEG--LVGIKPVR----DGIFIRPILILRRKEIEEYCEINNLNPRIDE 187

Query: 193 SNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTV 244
           +N ++ + R ++R     F+ +     +   + +      K    +   V    PK    
Sbjct: 188 TNLEEIYSRNKIRLKAIPFIEENFNPDIVATLNRLAYSCSKDVEFIQEEVEKRFPKLCIK 247

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
             RSI+ I ++  N    LL  +++ +      + +    + ++ ++     G    ++I
Sbjct: 248 ENRSIL-IKEEAFNEKEALLTRIIKKALFEVSYKHNNFELKHIQDIIALKDKGTGKQINI 306

Query: 305 GRVVI 309
              VI
Sbjct: 307 TNGVI 311


>gi|291551165|emb|CBL27427.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Ruminococcus torques
           L2-14]
          Length = 482

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 19/249 (7%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M    +E +  ++R    +     I++ VSGG+DS+ LL+AL S+     F   +     
Sbjct: 1   MMDKRLEKIENYIRQYHMIEKGDRIVIGVSGGADSVCLLMALCSLQEKLGF---QVLVCH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISE 112
           V+H LR E A  +  YV  +C ++++     H  V     K +  L  A R  R     +
Sbjct: 58  VNHELRGEEAAQDEAYVEMLCHKMQVPFFAFHENVELIAKKRKESLEEAGRYVRRQAFEQ 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +    T I TAH  +D  ET+ +   R     G GL G+C   +  +     RP L  
Sbjct: 118 LCREQGGTKIATAHHSNDNAETMLLNMAR-----GTGLRGLCG--IRPVYGKWIRPLLEL 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVN 231
            RE+I  +L    IS+C D +N +D + R R+R  +  +    +  + ++ F  L  +  
Sbjct: 171 SREEIEQWLKDCEISYCIDETNQEDEYTRNRIRHHIIPVLEEQVNTRAIEHFVKLSEQAE 230

Query: 232 NAVAMLIPK 240
                L  +
Sbjct: 231 EIYEYLEKQ 239


>gi|206890355|ref|YP_002248733.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742293|gb|ACI21350.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 460

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 140/314 (44%), Gaps = 27/314 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  I+ V+  +     L    H+LV +SGG DS+ LL  L+ +   +S  K+K SA  +D
Sbjct: 1   MDIIKKVKQTIEKYNMLSVGDHVLVGLSGGPDSVCLLQILNIL---KSSYKLKISAAYID 57

Query: 60  HCLRETA-KDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114
           H LR      E+ +   +C  L I   V S        K +  +  AAR  RYA + + +
Sbjct: 58  HELRPDDVPKEIEFCKKLCESLNIPFYVQSINVKDFAKKEKISIQEAARILRYAALDQIS 117

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             INA  I  AH  DDQ ETV MR  R       GLSG+           I RP +   R
Sbjct: 118 ININAHKIAVAHNADDQAETVIMRLLRGAGP--AGLSGIPPVRKK-----IIRPLIEIER 170

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVN 231
            +I  FL ++NIS+  DPSN   ++ R ++R+ +  +           + K  D+  + N
Sbjct: 171 TEIERFLSEKNISYIIDPSNESMKYLRNKIRKTLMPVIKTVSPKATKIISKTADIIREEN 230

Query: 232 NAVAMLIPKYL-TVHMRSIIAISQDILN----IDSTLLFYLLRVSAAICGGQISLPGYRS 286
           + + + + K L  +  R      +   N    ++  +L   LR +     G   L  +  
Sbjct: 231 DYINVAVTKALMRLMSRKTDKTIELFCNPMEVLNIVILRRALRFAIDSVKGLKGL-TFDH 289

Query: 287 MERVMLFLKSGKRG 300
           +E ++  +K+GK G
Sbjct: 290 IEDIINLIKTGKTG 303


>gi|205351573|ref|YP_002225374.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271354|emb|CAR36147.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 403

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 139/386 (36%), Gaps = 40/386 (10%)

Query: 38  ALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96
            LH ++  R     +   AI + H L   A   VR+   VC R ++   V     +    
Sbjct: 2   LLHQLVLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGL 61

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R     G+   G C  
Sbjct: 62  GIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGECSP 119

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
                   + RP LR  R+ +  + ++  + W ED SN DD ++R  +R       L  L
Sbjct: 120 F---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLR----ALPLL 172

Query: 217 YLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA- 272
             +   F     +   +      L+ + L   +   I  ++  L +   +    +R +A 
Sbjct: 173 QQRWPHFPASVARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLSPLMSMSDVRRAAI 231

Query: 273 ---AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NL 325
               +      +P   ++ER+       +     C+  G   I R  + LW  ++V    
Sbjct: 232 LRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQH 291

Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSMPS 382
            T + +P   T          L   L  +      +   P     +  +     +  +  
Sbjct: 292 ETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAPGVLHIVG 344

Query: 383 KEGGKPL--------LAPFSRFMTKF 400
           + GG+ L        + P+ R  T  
Sbjct: 345 RNGGRKLKKIWQEQGIPPWRRDTTPL 370


>gi|157364389|ref|YP_001471156.1| tRNA(Ile)-lysidine synthetase [Thermotoga lettingae TMO]
 gi|166988068|sp|A8F7F8|TILS_THELT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157314993|gb|ABV34092.1| tRNA(Ile)-lysidine synthetase [Thermotoga lettingae TMO]
          Length = 447

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 130/293 (44%), Gaps = 23/293 (7%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             L++P H +LVA+SGG DSM LL  L  +   R     +  A  ++H +RE A  + ++
Sbjct: 17  HHLIFPGHKVLVALSGGMDSMSLLNILLKL---RQKLNCEIFAAHLNHMIRENAIRDEQF 73

Query: 73  VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V   C +  +   V  +   K     + G+   AR ARY  ++  A      LI  AH  
Sbjct: 74  VYSYCKKAGVKIFVERFDVPKFCADRKIGIEEGARAARYTFLNRIAHENGIDLIALAHNL 133

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D +ET+  R  R     G GLSG+    L D N    RP L  +RE I +++ + NI +
Sbjct: 134 NDLVETILYRIVR-----GTGLSGIVCMKLKDENK--IRPLLYFKREQIEAYIKRNNIPY 186

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR---VKVNNAVAMLIPKYLTVH 245
            +D +N + ++ R  +R  +              F  +    + + N V  LI KY    
Sbjct: 187 VQDETNFNLKYSRNYIRHRIVPALKLLNSDLENAFSQVHFSGMMLENHVKRLIKKYSERI 246

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSG 297
            R    I  D  ++D   +  L++     C GQ+++   YR ++ V+  L   
Sbjct: 247 FRCGKRIIFDSKDMDEFEIIELVKY----CAGQMNVDLNYRQIQLVVSKLNEN 295


>gi|219853482|ref|YP_002470604.1| hypothetical protein CKR_0139 [Clostridium kluyveri NBRC 12016]
 gi|219567206|dbj|BAH05190.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 465

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 32/320 (10%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LS IE  + F R       ++VAVSGG DS+ LL  L+ + +      I   A  V+HCL
Sbjct: 9   LSTIEENKMFNR----GDKVIVAVSGGPDSICLLHMLYVLQNRL---DITLYAAHVNHCL 61

Query: 63  R-ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R E    +  YV   C  L +      + V++   + +    +A RE RY    E  K +
Sbjct: 62  RGEEGDKDEEYVKKFCESLSVEFKSLKTDVNYIAKEKRISCESAGREVRYKFFEELKKKL 121

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I  AH  +DQ ETV MR  R     G GL G+        N++  RP +R  R++I
Sbjct: 122 KAEKIAIAHNANDQAETVLMRIMR-----GAGLQGLTGINPVRDNVF-VRPLIRITRDEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNA 233
             +    N+    D +N +  + R ++R  +     +     +   + +  D+    N+ 
Sbjct: 176 EKYCDNNNLHPRIDKTNLETIYSRNKIRLELIPYIQNNFNRDIVAVLNRLSDIIKIDNDY 235

Query: 234 VAML----IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
           +  +      KY  +  + +I   +  L  D  +L  ++R+S  +  G +     + +E+
Sbjct: 236 LNYISREKFKKYCEIKAQKVIIFKEAFLE-DKAVLVRIIRMSLEVVEGNL-----KDIEK 289

Query: 290 VMLFLKSGKRGCVSIGRVVI 309
           + +F     + C +   +++
Sbjct: 290 IHIFSIINVQKCSTGKEIML 309


>gi|153952817|ref|YP_001393582.1| TilS [Clostridium kluyveri DSM 555]
 gi|146345698|gb|EDK32234.1| TilS [Clostridium kluyveri DSM 555]
          Length = 462

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/320 (24%), Positives = 138/320 (43%), Gaps = 32/320 (10%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LS IE  + F R       ++VAVSGG DS+ LL  L+ + +      I   A  V+HCL
Sbjct: 6   LSTIEENKMFNR----GDKVIVAVSGGPDSICLLHMLYVLQNRL---DITLYAAHVNHCL 58

Query: 63  R-ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R E    +  YV   C  L +      + V++   + +    +A RE RY    E  K +
Sbjct: 59  RGEEGDKDEEYVKKFCESLSVEFKSLKTDVNYIAKEKRISCESAGREVRYKFFEELKKKL 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I  AH  +DQ ETV MR  R     G GL G+        N++  RP +R  R++I
Sbjct: 119 KAEKIAIAHNANDQAETVLMRIMR-----GAGLQGLTGINPVRDNVF-VRPLIRITRDEI 172

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNA 233
             +    N+    D +N +  + R ++R  +     +     +   + +  D+    N+ 
Sbjct: 173 EKYCDNNNLHPRIDKTNLETIYSRNKIRLELIPYIQNNFNRDIVAVLNRLSDIIKIDNDY 232

Query: 234 VAML----IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
           +  +      KY  +  + +I   +  L  D  +L  ++R+S  +  G +     + +E+
Sbjct: 233 LNYISREKFKKYCEIKAQKVIIFKEAFLE-DKAVLVRIIRMSLEVVEGNL-----KDIEK 286

Query: 290 VMLFLKSGKRGCVSIGRVVI 309
           + +F     + C +   +++
Sbjct: 287 IHIFSIINVQKCSTGKEIML 306


>gi|260902380|ref|ZP_05910775.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AQ4037]
 gi|308110178|gb|EFO47718.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AQ4037]
          Length = 438

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 132/335 (39%), Gaps = 28/335 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ++VA SGG DS    + L  +   R    +   A+ V H L E A            + 
Sbjct: 21  KVVVAFSGGVDSR---LLLELLRRYREENSLSCHAVYVHHGLSENADIWADKCQVWAKQA 77

Query: 81  RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            I+ SV     ++     + + AREARY  ++ H       L++T    DDQ+ET  +  
Sbjct: 78  GISCSVERVNLDTNSGESIESLAREARYEALARHINR--GDLLLTGQHADDQVETFLLAL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M +T+ +     + RP L  +RE I +      + W ED SN D R+
Sbjct: 136 KRGSGPKG--LSSMAETMPFA-GGTLVRPLLNIKREQIEATAKNIGLEWVEDESNQDTRY 192

Query: 200 ERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R  +         +++  +++   L  +    +  L+       +++ +++S D 
Sbjct: 193 DRNFLRHRIVPELSERWPSIHQAVQRSASLCAQQEALLDELLGSVFARALQADLSLSIDE 252

Query: 257 LNIDSTL-LFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRR 312
           L I S L    L+R+  +      ++P    +  +       +      + + +  I R 
Sbjct: 253 LAIHSELAQARLIRMWLSKL--NANMPSQAQLRLIWQEVALAQQDANPKLKLKQGEIRRF 310

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
            + L+      ++ +          W G  Q    
Sbjct: 311 QSKLYWVTPHADVTS----------WQGHIQIDEP 335


>gi|291561227|emb|CBL40026.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [butyrate-producing
           bacterium SS3/4]
          Length = 541

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 67/265 (25%), Positives = 113/265 (42%), Gaps = 22/265 (8%)

Query: 4   SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
              + V  F++          +L AVSGG+DS+ LL+ LH + ++     IK  A  ++H
Sbjct: 15  RFRQKVLSFMKKNHMTDRGDSVLAAVSGGADSVCLLLLLHEMAAELG---IKVFAFHMNH 71

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R   A  + R+V ++C RL I  +V    V    ++       A R  RY  + E A+
Sbjct: 72  GIRGAEADRDERFVMELCERLNIPLTVAHEKVEEYAAERGLSGEEAGRILRYHHLGETAE 131

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 I  AH  DD  ETV +   R       GL+G+        N  I RP L   R+
Sbjct: 132 KYQCAKIAVAHHEDDDAETVLLNLFRGS-----GLAGLSGIRPVREN--IIRPLLCVSRK 184

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +L ++ +SWCED +N ++ + R ++R  +       +     +  +  + V+   A
Sbjct: 185 EIEEYLNEQELSWCEDSTNKENDYTRNKIRNELLPWVTENI---NSRAAEHILAVSEFAA 241

Query: 236 MLIPKYLTVHMRSIIAISQDILNID 260
                Y  +    I+  S      +
Sbjct: 242 Q-ADAYFEMEAERILEESCSKRREE 265


>gi|90962327|ref|YP_536243.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118]
 gi|90821521|gb|ABE00160.1| tRNA(Ile)-lysidine synthase TilS [Lactobacillus salivarius UCC118]
          Length = 452

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 122/297 (41%), Gaps = 13/297 (4%)

Query: 13  VRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           +R L +    +L+AVS G DSM LL  +  +        ++ +   +DH LRE +K+E +
Sbjct: 16  LRDLKISNKKVLLAVSTGVDSMVLLSGMLKLSK---VLDVEINIAYIDHQLREQSKEETK 72

Query: 72  YVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++ + C    I   V  W K   P   + AAARE RY    +  K  N   ++TAH  DD
Sbjct: 73  FIKEFCFARNIPLYVYRWEKEEHPVQSIEAAAREVRYNFFEKVLKENNIEYLVTAHHGDD 132

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET  M+  R    +   L  +    ++  +  I RP L   +++I  +  Q  I + E
Sbjct: 133 QAETFLMKLIRGGNIQ--QLQAIQSVRIFREDYQIVRPMLIFNKKEIYDYAKQLGIKYYE 190

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKYLTVHMR 247
           D +N  D ++R R+R  +  +        +K       ++ N   A+  +    L    +
Sbjct: 191 DETNKSDDYQRNRLRHHIIPVLKAENPEFLKHVLGYTQQLTNNLQAIQEVADVKLNKISK 250

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                    +         LL     + G +I       +++++  L   K+    I
Sbjct: 251 EETLGYDKFVKESPLWQRILLERYLEVKGLEIK---ETQVQQILAMLNDKKKPQAKI 304


>gi|332685802|ref|YP_004455576.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311]
 gi|332369811|dbj|BAK20767.1| tRNA(Ile)-lysidine synthetase [Melissococcus plutonius ATCC 35311]
          Length = 465

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 66/259 (25%), Positives = 113/259 (43%), Gaps = 16/259 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+A+SGG DSM LL  +  +        I F+   V+H +RE + +E  YV   C
Sbjct: 17  KKNRLLLAISGGVDSMVLLHLIEQLQKK---IPIDFAVAHVNHKIREESIEEAAYVCTYC 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  I +   SW+ +K +  + A AR+ RY+  +   K    T ++TAH  DDQ ET+ M
Sbjct: 74  KQKNIPYYETSWEEAKDK-NIEARARKFRYSFFANLMKQERYTHLLTAHHLDDQAETMLM 132

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R    K +    +           + RPFL   +E IR++ + + I + ED +N  D
Sbjct: 133 KMVRGTTLKNLAGIQLQQDFSIGK---LVRPFLIFSKEQIRNYAIDKKIMYFEDNTNYSD 189

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS---- 253
            + R R+R  +  +        ++    L  ++  A + LI   +T +    +  S    
Sbjct: 190 SYARNRMRHQIIPLLKQENKQFLEHMAGLSQQIT-AASSLIDSMITPYFNQWVHQSNAIW 248

Query: 254 ----QDILNIDSTLLFYLL 268
                D+L        + L
Sbjct: 249 YLQLDDLLKQTEEFQLFFL 267


>gi|289663217|ref|ZP_06484798.1| cell cycle protein [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 469

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 140/389 (35%), Gaps = 26/389 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    C  
Sbjct: 50  GPVLLAYSGGMDSNVLLHLLAATPRYRQAG---LRALHVHHGLHTDADAWAAHCQRSCDA 106

Query: 80  LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           L++   +V     +    GL AAAR AR+   +          +  AH  DDQ ET  +R
Sbjct: 107 LQVPLQIVQVHVERDSGLGLEAAARNARHTAFAHALAA--GEWLALAHHRDDQAETFLLR 164

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           + R    +G+             N  + RP L   R D+ ++ L + + W EDPSN D R
Sbjct: 165 ALRASGPEGLAAM---RPQRPFANGTLWRPLLAHARADLLAYALAQGLRWIEDPSNADPR 221

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQD 255
            +R  +R  V  +                    +A A+L+ + + +      +  A+   
Sbjct: 222 HDRNFLRSQVLPLLQQRWPQAADALARSAQLSADASALLLQQDMALLPSVRTASGALDLH 281

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            L          L  +         LP     ++ER +    + ++ C +  ++ I R  
Sbjct: 282 ALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDHYAADRQACFAWQQMEIRRWR 341

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP-------S 366
             L++ R     P  +   +    WDG    Q    + +++      +   P        
Sbjct: 342 QCLFLHR-----PAAVWPSDWQASWDGAVPLQLPDGAQLRLLGAPGLRFAQPLLARARQG 396

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLAPFSR 395
           G   ++ +RA S           L P+ R
Sbjct: 397 GERIVLPRRAHSHQLKHLLQALDLPPWER 425


>gi|289668288|ref|ZP_06489363.1| cell cycle protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 469

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 140/389 (35%), Gaps = 26/389 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    C  
Sbjct: 50  GPVLLAYSGGMDSNVLLHLLAATPRYRQAG---LRALHVHHGLHTDADAWAAHCQRSCDA 106

Query: 80  LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           L++   +V     +    GL AAAR AR+   +          +  AH  DDQ ET  +R
Sbjct: 107 LQVPLQIVQVHVERDSGLGLEAAARNARHTAFAHALAA--GEWLALAHHRDDQAETFLLR 164

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           + R    +G+             N  + RP L   R D+ ++ L + + W EDPSN D R
Sbjct: 165 ALRASGPEGLAAM---RPQRPFANGTLWRPLLAHARADLLAYALAQGLRWIEDPSNADPR 221

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQD 255
            +R  +R  V  +                    +A A+L+ + + +      +  A+   
Sbjct: 222 HDRNFLRSQVLPLLQQRWPQAAGALARSAQLSADASALLLQQDMALLPSVRTASGALDLH 281

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            L          L  +         LP     ++ER +    + ++ C +  ++ I R  
Sbjct: 282 ALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDHYAADRQACFAWQQMEIRRWR 341

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP-------S 366
             L++ R     P  +   +    WDG    Q    + +++      +   P        
Sbjct: 342 QCLFLHR-----PAAVWPSDWQASWDGAVPLQLPDGAQLRLLGAPGLRFAQPLLARARQG 396

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLAPFSR 395
           G   ++ +RA S           L P+ R
Sbjct: 397 GERIVLPRRAHSHQLKHLLQALDLPPWER 425


>gi|197361444|ref|YP_002141080.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197092920|emb|CAR58349.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 403

 Score =  224 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 138/383 (36%), Gaps = 34/383 (8%)

Query: 38  ALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96
            LH ++  R     +   AI + H L   A   VR+   VC R ++   V     +    
Sbjct: 2   LLHQLVLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERMTLADNGL 61

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R     G+   G    
Sbjct: 62  GIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGERSP 119

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
                   + RP LR  R+ +  + ++  + W ED SN DD ++R  +R     + L   
Sbjct: 120 F---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLRALPL-LQRR 175

Query: 217 YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA---- 272
           +            +      L+ + L   +   I  ++  L +   +L   +R +A    
Sbjct: 176 WPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLSPLMLMSDVRRAAILRR 234

Query: 273 AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTL 328
            +      +P   ++ER+       +     C+  G   I R  + LW  ++V     T 
Sbjct: 235 WLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQHETT 294

Query: 329 ILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSMPSKEG 385
           +++P   T          L   L  +      +   P     +  +     +  +  + G
Sbjct: 295 VVWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAPGVLHIVGRNG 347

Query: 386 GKPL--------LAPFSRFMTKF 400
           G+ L        + P+ R  T  
Sbjct: 348 GRKLKKIWQEQGIPPWRRDTTPL 370


>gi|217974044|ref|YP_002358795.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS223]
 gi|217499179|gb|ACK47372.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS223]
          Length = 496

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 130/319 (40%), Gaps = 18/319 (5%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +SL     +++A SGG DS  L   L      R   +  +  + V H L + A    ++
Sbjct: 24  AQSLAPSCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFSYQLVYVHHGLSDNADSWAQH 81

Query: 73  VSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +      +  +V     ++ P+  L A AR+ RY  I  H       +++TAH  DDQ
Sbjct: 82  CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAN--DVLLTAHHEDDQ 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET+ +  +R    KG+   G    +     L   RP L   RE I ++  Q+ +   ED
Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196

Query: 192 PSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            SN DD+++R  +R  +         ++     +   L  +    + + + + L + +  
Sbjct: 197 ESNQDDKYDRNFLRLEIIPRLKSRWPSIATTASRSAALCAEQQATLDVQVSERLPLWLTQ 256

Query: 249 IIAISQDILNIDST----LLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
               +Q +  +D        +  L +   I     +LP    + +++   L  K   +  
Sbjct: 257 APYHTQSVFKLDGFAEQSADWQALLLRGFIESQGFALPSKVQLNQIITQVLTAKDDAKVH 316

Query: 302 VSIGRVVIDRRANFLWITR 320
           + +G   I R AN +++ +
Sbjct: 317 IRVGECEIRRFANRVYLFK 335


>gi|152999993|ref|YP_001365674.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS185]
 gi|151364611|gb|ABS07611.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS185]
          Length = 491

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 126/326 (38%), Gaps = 32/326 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +SL     +++A SGG DS  L   L            +   + V H L + A    ++
Sbjct: 24  AQSLAPDCKLVLAYSGGVDSEVLAFGLSQFARQHPEFHYQL--VYVHHGLSDNADSWAQH 81

Query: 73  VSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +      +  +V     ++ P+  L A AR+ RY  I  H       +++TAH  DDQ
Sbjct: 82  CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAN--DVLLTAHHEDDQ 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET+ +  +R    KG+   G    +     L   RP L   RE I ++  Q+ +   ED
Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            SN DD+++R  +R       L  +     ++  +    + + A+   +  T+ ++    
Sbjct: 197 ESNQDDKYDRNFLR-------LEIIPRLKARWPSIATTASRSAALCAEQQATLDLQVSER 249

Query: 252 ISQDILNIDSTLL--------------FYLLRVSAAICGGQISLPGYRSMERV---MLFL 294
           +   +                      +  L +   I     +LP    + ++   +L  
Sbjct: 250 LPLWLTQAPYHTQCVFKLEGFAEQSADWQALLLRGFIESQGFALPSKVQLNQIITQLLTA 309

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR 320
           K   +  + +G   I R AN +++ +
Sbjct: 310 KDDAKVHIRVGECEIRRFANQVYLFK 335


>gi|160878299|ref|YP_001557267.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg]
 gi|160426965|gb|ABX40528.1| tRNA(Ile)-lysidine synthetase [Clostridium phytofermentans ISDg]
          Length = 492

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 118/288 (40%), Gaps = 26/288 (9%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ V  F++    L     ++V VSGG+DS+ LL  LH +   R    +   A+ V+H L
Sbjct: 2   LKKVENFIKDQGMLSPFDTVIVGVSGGADSICLLTCLHRL---REQYHLNLYAVHVNHML 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R   A ++  +V  +C+ L I    V     +      T +  A R  RY    +  + +
Sbjct: 59  RGMEADEDEAFVQSMCNSLSIPLHCVREDVKRIAELSGTTIEEAGRNLRYLSFEQECERV 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I  AH  +D  ETV     R     G GL+GM    +      I RP L   RE+I
Sbjct: 119 KAHKIAVAHNRNDNAETVLFHLFR-----GTGLTGMTG--IPKKRGQIIRPLLCVTREEI 171

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVK 229
            +FL   +I +  D +N  + + R ++R          + +  +  +     +  ++   
Sbjct: 172 ETFLFNEHIFYRIDSTNLSNDYTRNKIRLSILPIATNEINERAVEHITSLSDQLLEVANY 231

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277
           ++        +  T+   S+    ++   I+  +   +LR +  +  G
Sbjct: 232 LDQVTEREFKRIATLSQESVTLDLREFTAIEDLIKREILRKAIKLISG 279


>gi|261245468|emb|CBG23258.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301156863|emb|CBW16339.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
          Length = 403

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 138/386 (35%), Gaps = 40/386 (10%)

Query: 38  ALHSVLSDR-SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96
            LH ++  R     +   AI + H L   A   VR+   VC R ++   V     +    
Sbjct: 2   LLHQLVLWRERHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGL 61

Query: 97  GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R     G+   G    
Sbjct: 62  GIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGERSP 119

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
                   + RP LR  R+ +  + ++  + W ED SN DD ++R  +R       L  L
Sbjct: 120 F---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLR----ALPLL 172

Query: 217 YLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA- 272
             +   F     +   +      L+ + L   +   I  ++  L +   +    +R +A 
Sbjct: 173 QQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TAEGTLRLSPLMSMSDVRRAAI 231

Query: 273 ---AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NL 325
               +      +P   ++ER+       +     C+  G   I R  + LW  ++V    
Sbjct: 232 LRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQH 291

Query: 326 PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSMPS 382
            T + +P   T          L   L  +      +   P     +  +     +  +  
Sbjct: 292 ETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAPGVLHIVG 344

Query: 383 KEGGKPL--------LAPFSRFMTKF 400
           + GG+ L        + P+ R  T  
Sbjct: 345 RNGGRKLKKIWQEQGIPPWRRDTTPL 370


>gi|253999456|ref|YP_003051519.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. SIP3-4]
 gi|253986135|gb|ACT50992.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. SIP3-4]
          Length = 456

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 131/338 (38%), Gaps = 22/338 (6%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           ++ F+       H+LVA+SGG DS  LL  L ++ ++     I+ S + V H L   A  
Sbjct: 22  LQQFITQHHIEGHLLVALSGGLDSCVLLHLLATLPNN---PGIRLSVMHVHHGLSPHADQ 78

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
              +   +C+   I   VV  +  +    GL AAAR  RY       +  +A  ++ AH 
Sbjct: 79  WAEHCQRLCASHAIPLQVVHVQVPRDSGQGLEAAARHLRYEA----MRAAHADYVVLAHH 134

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV ++  R     G G+ G+     YD    + RP L   R  +  +  Q  + 
Sbjct: 135 QDDQAETVMLQLLR-----GAGMRGLAAMASYDAQQGLLRPLLDISRAQLAEYAAQHQLE 189

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVH 245
           W ED SN D  ++R   R+ V  +         K      L+     ++ M + +    +
Sbjct: 190 WVEDESNHDTHYDRNFCRQQVLPLLEQRFPGAGKALARSALQAAEAESLQMALAELDAAN 249

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCV 302
                A++   L     +    L     +      LP    ++   R +L      +  +
Sbjct: 250 ALRGDALNVARLQALGEVRARNLLRW-WLSSRLRYLPHREHLQEMLRQLLTAADDAKLAL 308

Query: 303 SI---GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
            +     + + R     ++    ++    I++ ++  V
Sbjct: 309 LLDGEQGLWLRRYRGHAYVVAQRKSADLDIVWDQQPVV 346


>gi|269101956|ref|ZP_06154653.1| tRNA(Ile)-lysidine synthetase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161854|gb|EEZ40350.1| tRNA(Ile)-lysidine synthetase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 467

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/406 (19%), Positives = 153/406 (37%), Gaps = 30/406 (7%)

Query: 11  FFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           F    L YP H   +++A SGG DS  LL  +   +++      +  A+ V H L   A 
Sbjct: 38  FAQTLLAYPHHSKRLIIAFSGGVDSRVLLELVARFIAE--HPDYQAHAVYVHHGLSAHAD 95

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +             I+ ++   +     +  +   AR+ARY  +S H       +++TA 
Sbjct: 96  EWGIKCQRWAESYGISFTLERVQLETGARVSIEQVARQARYHALSTHMNL--GDILLTAQ 153

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET  +  +R     G+         +   +   +RP L  RR +I  F L   +
Sbjct: 154 HADDQIETFMLALKRGSGPTGLAAMPQWQRFVLGFH---ARPLLTTRRAEIVQFALDHQL 210

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
            W ED SN D R++R  +R  +   +L   +  +        ++      L+ + L   +
Sbjct: 211 DWVEDESNQDTRYDRNFLRHQIVP-ELEQRWPGVVAAVSRSAQLCGEQEELLAELLGQTL 269

Query: 247 RSIIAISQDIL---NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRG 300
              I   + +L       +L F L+R    +    + +P    ++++       K     
Sbjct: 270 NQAIQSDKSLLLPSPCSKSLGFALIRQW--LKSLAVVMPSLAQLQQIWSSVVHAKEDANP 327

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF-QNLSDSLIQI-GPQS 358
            +   +  I R    L++     ++ +     ++T   D  YQ  QNL    + + G ++
Sbjct: 328 KLCWSQYEIRRYQGRLYVLEQWDDISS----WQQTIALDQTYQLPQNLGKLTLTLQGEKA 383

Query: 359 YRKADVPSGIPPI-IAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
             +   P     +    +  +  P    G   +    +   ++ +P
Sbjct: 384 LLRQPKPDETVSVRFHYQGDAIKPLGRSGSRKI---KKLYQEYQVP 426


>gi|261822581|ref|YP_003260687.1| tRNA(Ile)-lysidine synthetase [Pectobacterium wasabiae WPP163]
 gi|261606594|gb|ACX89080.1| tRNA(Ile)-lysidine synthetase [Pectobacterium wasabiae WPP163]
          Length = 439

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 128/325 (39%), Gaps = 25/325 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL+A SGG DS  LL  L   ++ R    +   A  + H L   A     +    C  
Sbjct: 22  GSILLAYSGGMDSSVLLHLL---VAARQRSGLAIRAAYIHHGLNPLADSWAEHCRQQCEH 78

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++  + ++        G+ AAAR ARY  +  H +      ++TA   DDQ ET  +  
Sbjct: 79  WQVPFASLAVTVEAQNGGIEAAARTARYRALQAHLQE--GETLLTAQHLDDQSETFLLAL 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+       T+    +  + RP L   R  + ++  +  + W ED SN D+RF
Sbjct: 137 KRGSGPAGLSAMAAQSTL---GHYRLIRPLLGFSRLQLEAYAQRHQLHWIEDDSNQDERF 193

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ----- 254
           +R  +RR +    L  L  +   F     +     A        +   S++A+ Q     
Sbjct: 194 DRNFLRRQI----LPRLTQRWPHFASAVARSAQLCAEQEQLLDELLEESLLALCQPDGAI 249

Query: 255 ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV 308
               +L +     F LLR   A  G   ++P    ++R+   +   +      + + ++ 
Sbjct: 250 SIDGLLPLSPERRFALLRRWLAQQG--TTMPAREQLQRLWDEVATSRQDAEPVLQLNQMQ 307

Query: 309 IDRRANFLWITRAVRNLPTLILYPE 333
           I R    L++   + +L   IL  +
Sbjct: 308 IRRFRQHLYLLPLMPSLKDRILPWQ 332


>gi|328474388|gb|EGF45193.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus 10329]
          Length = 438

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 132/335 (39%), Gaps = 28/335 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ++VA SGG DS    + L  +   R    +   A+ V H L E A            + 
Sbjct: 21  KVVVAFSGGVDSR---LLLELLRRYREENSLSCHAVYVHHGLSENADIWADKCQVWAKQA 77

Query: 81  RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            I+ SV     ++     +   AREARY  ++ H       L++T    DDQ+ET  +  
Sbjct: 78  GISCSVERVNLDTNSGESIELLAREARYEALARHINR--GDLLLTGQHADDQVETFLLAL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M +++ +     + RP L  +RE I +      + W ED SN + R+
Sbjct: 136 KRGSGPKG--LSSMAESMPFA-GGTLVRPLLNIKREQIEATAKNIGLEWVEDESNQNTRY 192

Query: 200 ERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R  +         +++  +++   L  +  + +  L+       +++ +++S D 
Sbjct: 193 DRNFLRHRIVPELSERWPSIHQAVQRSASLCAQQESLLDELLGSVFARALQADLSLSIDE 252

Query: 257 LNIDSTL-LFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRR 312
           L I S L    L+R+  +      ++P    +  +       +      + + +  I R 
Sbjct: 253 LAIHSELAQARLIRMWLSKL--NANMPSQTQLHLIWQEVALAQQDANPKLKLKQGEIRRF 310

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
            N L+      ++ +          W G  Q    
Sbjct: 311 QNKLYWVTPHADVTS----------WQGHIQIDEP 335


>gi|160874614|ref|YP_001553930.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS195]
 gi|160860136|gb|ABX48670.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS195]
 gi|315266855|gb|ADT93708.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS678]
          Length = 491

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 18/319 (5%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +SL     +++A SGG DS  L   L            +   + V H L + A    ++
Sbjct: 24  AQSLAPDCKLVLAYSGGVDSEVLAFGLSQFARQHPEFHYQL--VYVHHGLSDNADSWAQH 81

Query: 73  VSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +      +  +V     ++ P+  L A AR+ RY  I  H       +++TAH  DDQ
Sbjct: 82  CLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAN--DVLLTAHHEDDQ 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET+ +  +R    KG+   G    +     L   RP L   RE I ++  Q+ +   ED
Sbjct: 140 LETILLALKRGQGPKGLAAMGQVQALAQGRQL---RPLLDISREQIEAYAKQQGLVHIED 196

Query: 192 PSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            SN DD+++R  +R  +         ++     +   L  K    + + + + L + +  
Sbjct: 197 ESNQDDKYDRNFLRLEIIPRLKARWPSIATTASRSAALCAKQQATLDVQVSERLPLWLTQ 256

Query: 249 IIAISQDILNIDST----LLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGC 301
               +Q +  +D        +  L +   I     +LP    + ++   +L  K   +  
Sbjct: 257 APYHTQSVFKLDGFAEQSADWQALLLRGFIESQGFALPSKVQLNQIITQLLTAKDDAKVH 316

Query: 302 VSIGRVVIDRRANFLWITR 320
           + +G   I R AN +++ +
Sbjct: 317 IRVGECEIRRFANQVYLFK 335


>gi|331092502|ref|ZP_08341324.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400723|gb|EGG80326.1| hypothetical protein HMPREF9477_01967 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 470

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 127/342 (37%), Gaps = 29/342 (8%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ V  FV     L     ++V VSGG+DS+ LL  L  +     F       + V+H L
Sbjct: 2   IKKVARFVAKWEMLNKADKVVVGVSGGADSVCLLFVLMELQKTIGF---DIIVVHVNHLL 58

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R E A+ + +YV ++C +  +   V    V W     +  L  A R  R     +  K  
Sbjct: 59  RGEDAESDEKYVRELCEKYHLTCEVYRENVEWIAKNKRESLEEAGRNVRREAFEQTLKKY 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             T I  AH  +D  ET+ M   R     G+G            N    RP L   R++I
Sbjct: 119 GGTKIALAHHRNDNAETLLMNLARGSGLAGLG-----GMRPVKENR--IRPLLCLERKEI 171

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRF--------VRDIDLHALYLKMKKFQDLRVK 229
             +LL+R I++C D +N  D + R RVR          V +  +      M++  +L+  
Sbjct: 172 EEYLLKRQIAYCTDETNYSDAYTRNRVRNHVIRTLEQGVNEKTVAHFSETMERIWELQDY 231

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME- 288
           +         +         + + ++   +   L   +++ +      +        +E 
Sbjct: 232 MEEEAERRYDRVSLEKENKTVLLKEEYEKLPPILRGMVIKKAIVSMTKKEKDIHAVHIEE 291

Query: 289 -RVMLFLKSGKRGCVSIGRVVIDRRAN-FLWITRAVRNLPTL 328
            + ++  + G++  +  G           +   R +R     
Sbjct: 292 VQKLMGNQVGRQIHLPYGVCACRCYEGICITFAREMRQKEEA 333


>gi|239998936|ref|ZP_04718860.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae 35/02]
 gi|240014155|ref|ZP_04721068.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae DGI18]
 gi|240016590|ref|ZP_04723130.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA6140]
 gi|240080779|ref|ZP_04725322.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae FA19]
 gi|240112854|ref|ZP_04727344.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae MS11]
 gi|240117903|ref|ZP_04731965.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID1]
 gi|240121717|ref|ZP_04734679.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID24-1]
 gi|240123462|ref|ZP_04736418.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae PID332]
 gi|240125707|ref|ZP_04738593.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-92-679]
 gi|240128163|ref|ZP_04740824.1| tRNA(Ile)-lysidine synthase [Neisseria gonorrhoeae SK-93-1035]
          Length = 411

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 112/313 (35%), Gaps = 14/313 (4%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+SGG DS+ LL  L        F      A+ + H L   A D   +  + C  L +  
Sbjct: 2   ALSGGLDSVVLLHLLVCAGKRAGFVP---EALHIHHGLSPRADDWADFCRNYCDMLGVGL 58

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
             V     K   G+ AAAR+ RYA  +         ++  AH  DDQ+ET  +   R   
Sbjct: 59  ETVKVCVEKNGLGIEAAARQKRYAEFA----EKGFDVLALAHHRDDQIETFMLAVARGGG 114

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
            +   L+ M        N  I RP L   R+DI  +  +  +   ED SNTD  + R R 
Sbjct: 115 LR--ALAAMPAVRPLGENGIIWRPLLPFSRQDIWDYARKHGLPNIEDESNTDTAYLRNRF 172

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDILNIDS 261
           R  +       +    +   +    +   +A+L     +       +    +   L    
Sbjct: 173 RHRILPELSAQIPHFGRHVLNNVRALQEDLALLEEVVVQDCRWVCGAGYFDTARWLTFSP 232

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
               ++LR    +    I +P   ++  +   L   K G  ++    +   A  L++  +
Sbjct: 233 RRKTHILR--NFLKENGIPVPNQNALADIARVLTEAKTGRWNLQGFELHHYAGRLFVFAS 290

Query: 322 VRNLPTLILYPEE 334
            +      L    
Sbjct: 291 EQLAKPAFLKDGT 303


>gi|330718517|ref|ZP_08313117.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc fallax KCTC 3537]
          Length = 442

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 10/262 (3%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V++L  P  ++VAVSGG DS+ LL AL      ++  +++F    V++ LR  + ++  +
Sbjct: 9   VQALQLPDKVIVAVSGGVDSVVLLDAL-----IKTQPQVEFIVAHVNYHLRPQSDNDAHF 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V+++  +  +    V W+    Q  +  AAR+ RY    E A       I+ AH  +DQ 
Sbjct: 64  VAEIAKKYHVVLRKVDWQGID-QGSVEEAARDFRYCFFEELANEYATNTILVAHHANDQA 122

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ ++  R    K   LSGM  T      + I RP L   ++ I+ +  Q  + WCED 
Sbjct: 123 ETILLKLVRGG--KLSQLSGMQPTRQVSKTVQIVRPLLPFSKQRIKLYAQQHRLEWCEDS 180

Query: 193 SNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           +N D  +  R  +R  +        +  ++       ++     M+  +  T ++  I+ 
Sbjct: 181 TNADSAYTPRNLIRLEILPRLTTINHKAIEHINQTASQIMQQEQMITMQ-ATQYLDDIMQ 239

Query: 252 ISQDILNIDSTLLFYLLRVSAA 273
             +   +I    L  +L +   
Sbjct: 240 SQKSWGDIPEIWLSAVLSIWLQ 261


>gi|312134561|ref|YP_004001899.1| tRNA(ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL]
 gi|311774612|gb|ADQ04099.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor owensensis OL]
          Length = 456

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 131/335 (39%), Gaps = 28/335 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  +E V+  +     L     +L+  SGG DSM LL  ++ +  +     +  +   ++
Sbjct: 1   MELLEKVKNNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCMYRLKDE---YNLDITVAHLN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
           H LR  A ++ ++V ++C R  I         +K           A R ARY+   E AK
Sbjct: 58  HMLRPEADEDEKFVIEMCKRYNIKCITRKVDVAKLKKEKGLSEEEAGRSARYSFFYEIAK 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            I+   I+  H  +D +ET ++   R  + KG+            +   I+RP +   RE
Sbjct: 118 EISIDRILLGHNKNDVVETFFLNLFRGSSLKGLA-------STPPVRDIIARPLINISRE 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA--------LYLKMKKFQDLR 227
           +I  F    NI +  D +N   +++R  VR  +  +            ++  ++  ++  
Sbjct: 171 EIEEFARVNNIPFVVDKTNYSLKYKRNIVRNEILPLIKERFGESVVSTIFRTIEVIREEN 230

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            ++         + +       I   +    +   L   +++V        IS    + +
Sbjct: 231 DQIEELTHNFFQECVQKEDFYYILDIEKAKKLPVFLQRRIIKVILECFNSSISHDMIKEI 290

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322
           E +   L SGK+       ++I+++ + L   R  
Sbjct: 291 EELFS-LSSGKKKVYK--DLIIEKQNDSLVFYRKA 322


>gi|207855754|ref|YP_002242405.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206707557|emb|CAR31831.1| cell cycle protein MesJ [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 403

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 139/388 (35%), Gaps = 41/388 (10%)

Query: 35  LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP 94
           LL  L   L       +   AI + H L   A+  VR+   VC+R ++   V     +  
Sbjct: 2   LLHQLVLWLE--RHPDVTLRAIHIHHGLSPHAESWVRHCETVCARWQVPLVVERVTLADN 59

Query: 95  QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154
             G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R     G+   G  
Sbjct: 60  GLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGER 117

Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
                     + RP LR  R+ +  + ++  + W ED SN DD ++R  +R       L 
Sbjct: 118 SPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLR----ALP 170

Query: 215 ALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
            L  +   F     +   +      L+ + L   +   I  ++  L +   +    +R +
Sbjct: 171 LLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TTEGTLRLSPLMSMSDVRRA 229

Query: 272 A----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR- 323
           A     +      +P   ++ER+       +     C+  G   I R  + LW  ++V  
Sbjct: 230 AILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAG 289

Query: 324 NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSM 380
              T + +P   T          L   L  +      +   P     +  +     L  +
Sbjct: 290 QHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAPGLLHI 342

Query: 381 PSKEGGKPL--------LAPFSRFMTKF 400
             + GG+ L        + P+ R  T  
Sbjct: 343 VGRHGGRKLKKIWQEQGIPPWRRDTTPL 370


>gi|284008503|emb|CBA75013.1| tRNA(Ile)-lysidine synthetase [Arsenophonus nasoniae]
          Length = 446

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/343 (21%), Positives = 141/343 (41%), Gaps = 20/343 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +     +   ++++     +LV  SGG DS  LL AL ++    +   +   A+ + H
Sbjct: 1   MNVDEAALLNQIIKAIGSTRRVLVGFSGGLDSTVLLHALVTLRQT-AVPNLNIRAVYIHH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L + A D   +   VC  L++A           + G+ AAAR+ARY    E        
Sbjct: 60  GLNDKADDWAIHCQQVCCDLQVAFYSQPVYIDPTKKGIEAAARDARYRAFREILLPE--E 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I+TA   DDQ ET  +  +R       GLS M  ++ +  + ++ RP L   R+ +  +
Sbjct: 118 IIVTAQHLDDQAETFLLALKRGSGP--AGLSAMPISMPFADS-YLIRPLLSFSRQQLVVY 174

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLI 238
             ++ +SW ED SN D R++R  +R  +    +     +   F     +  +  A    +
Sbjct: 175 AQKKALSWIEDDSNQDQRYDRNFLRLTI----MPHFNRRWPHFSQAVARSASLCAEQEAL 230

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM--- 291
              L     S +  ++  L +D+   +  ++ +A     +   +I +P    ++++    
Sbjct: 231 LNELLQDYLSQLVTAEGALQLDALASYSAIKRNAILRRWLSFHRILMPSRVQLKQIWQDV 290

Query: 292 LFLKSGKRGCVSIG-RVVIDRRANFLWITRAVRNLPTLILYPE 333
           +  +        +    VI R    LW+     +L  + L  +
Sbjct: 291 ICARPDAEPQFKLANNNVIRRFKQQLWLLPQFNDLTKICLAWQ 333


>gi|30249025|ref|NP_841095.1| hypothetical protein NE1022 [Nitrosomonas europaea ATCC 19718]
 gi|61216622|sp|Q82VP4|TILS_NITEU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|30138642|emb|CAD84933.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 458

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 135/350 (38%), Gaps = 27/350 (7%)

Query: 3   LSPIESVRFFVRSLV----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           +SP +    F  +L         + VA+SGG DS+ LL  L +        +++ SA+ V
Sbjct: 7   ISPTDITDCFFHNLRAQVRPGDRLTVALSGGVDSVVLLHLLTTFSESM---QLEVSAVHV 63

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTI 117
           +H +   + +   +   +C  L I  S+   K   +PQ  L A AREARY +        
Sbjct: 64  EHGISTYSGEWSAFCQSLCDSLAIPLSIHRLKIRRRPQESLEAIAREARYQIFKHI---- 119

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +M A   DDQ+ET+ ++  R    KG+        +     + + RP L   R +I
Sbjct: 120 QADYVMLAQHQDDQVETLILQLLRGAGVKGLSAMPTVRLLEPGKTIRLFRPLLNIPRSEI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++     +SW  D SN D  ++R  +R  +  + L       +K      +     A L
Sbjct: 180 LNYARLHGLSWVTDESNLDTSYDRNFLRHQILPL-LEQRSPAYRKTLFRSTQHLGEAAHL 238

Query: 238 IPKYLTVHMRSIIAIS----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           + +   +   + +  +    Q +  ++      LLR   A     I LP    +E ++  
Sbjct: 239 LDELAEIDAENTLVTNRLSLQGLRKLEPARARNLLRYLLA--QRLIRLPNSTKLEEILRQ 296

Query: 294 L---KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340
           L   +        +  + I      +       +LP  I       VW G
Sbjct: 297 LNNIQPDNHFRFIVDTLEIRCHRGLIEFL-PADSLPEPIAP----VVWQG 341


>gi|16799328|ref|NP_469596.1| hypothetical protein lin0251 [Listeria innocua Clip11262]
 gi|61216704|sp|Q92F56|TILS_LISIN RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName:
           Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
           Full=Hypoxanthine-guanine phosphoribosyltransferase;
           Short=HGPRT; Short=HGPRTase
 gi|16412680|emb|CAC95484.1| fusion protein, N-terminal part similar to B. subtilis YacA
           protein, C-terminal part similar to hypoxanthine-guanine
           phosphoribosyltransferase [Listeria innocua Clip11262]
          Length = 648

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 119/326 (36%), Gaps = 21/326 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS  LL  L    S     K   +   ++H LRE A+ E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSFALLHFL---WSANLVPKEAIAVAHLNHHLRENAEKEQLAVQTFC 76

Query: 78  SRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I   +    V  +  K Q G+   AR  RY    +     N   ++ AH  DDQ+E
Sbjct: 77  EERDIPFFIEEVDVKKRAEKLQKGIEETARIVRYDFFEKVMAENNINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  +   +G SG+           I RPFL   + +I  +  +  + +  D S
Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKREVRGGYAI-RPFLPITKAEIIEYATKHALPYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   K+F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRTQLLPFLSKENPAVYEHFKRFSEETSEDFQFLEELASNLLKKNLIQNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAIC----GGQISLPGYRSMERVMLFLKSGKRGCV 302
           +    +  D  N  + L    + +         G  I++     + +++          +
Sbjct: 254 KQSTLLLSDFKNEANPLQRRAIHLLLMYLYNDDGRVITVNHIYQIIQMIQSENPSSSIDL 313

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTL 328
                VI       +        P  
Sbjct: 314 PKKLTVIRSYNELHFQFGERHAPPEF 339


>gi|317502958|ref|ZP_07961048.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella salivae DSM 15606]
 gi|315665924|gb|EFV05501.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella salivae DSM 15606]
          Length = 448

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 149/379 (39%), Gaps = 47/379 (12%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  S  + V+ F+   + L   +  L+A+SGG DS+ LL  +  +           +A+ 
Sbjct: 1   MLSSFAQKVKAFIAENQLLQPESTYLLALSGGCDSVALLRIMIEL-------NYHVAAVH 53

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112
            +  LR   +K +  +  ++C  L++    V +            +  AARE RY    +
Sbjct: 54  CNFQLRNAESKRDEMFCEELCRSLKVPFHRVYFDTKAYASLHHVSIEMAARELRYDYFEK 113

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K I+A  I+ AH  DD +ET  +   R    +G  L GM        N  I RP L  
Sbjct: 114 LRKDISADDILVAHHQDDNIETALLNLIRGTGIQG--LLGMK-----PKNGHIIRPLLSV 166

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQD 225
            R++I  +L   +  +  D SN      R ++R       + +       +   +K   +
Sbjct: 167 SRKEIEQYLSSIHQDYVTDSSNLVADVMRNKIRLEVIPLLKTLNPSVSDNISTTIKHLNE 226

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLP 282
               +N+A+     + ++V+ ++ IAI+   L        +L+ +L              
Sbjct: 227 ASNVLNSALKDGQKRVVSVYKQNQIAINIKALQKEVSPEYILYSVL---------SNYSF 277

Query: 283 GYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET-TVWD 339
               +E +   L   +GKR       +V DR    L I    +    ++  PEE   VW+
Sbjct: 278 SSAQIENIAQSLNASTGKRWYSKTHELVKDRE--TLLIATRTQPTTKVLRVPEEGLFVWN 335

Query: 340 GRYQFQ-NLSDSLIQIGPQ 357
              +F+ NLS+      P 
Sbjct: 336 EHIKFKINLSEITSCFEPS 354


>gi|300857288|ref|YP_003782272.1| putative tRNA(Ile)-lysidine synthase [Clostridium ljungdahlii DSM
           13528]
 gi|300437403|gb|ADK17170.1| predicted tRNA(Ile)-lysidine synthase [Clostridium ljungdahlii DSM
           13528]
          Length = 468

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 121/303 (39%), Gaps = 30/303 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  I   + F R       ++VAVSGG DS+ LL  L+ +   R    I      V+HCL
Sbjct: 6   LDTITKNKMFDR----GDKVIVAVSGGPDSICLLHILYVL---REKLDITLCVAHVNHCL 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTI 117
           R   A  +  YV   C  L+I    +         +      +A R+ RY+   +    +
Sbjct: 59  RGKDADGDEEYVKKFCENLKIQFKSLKIDVNHVSQEEGISCESAGRKVRYSFFEKLKDEL 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I  AH  +DQ ET+ MR  R     G GL G+        N++  RP +   R++I
Sbjct: 119 KAQKIAIAHNANDQAETILMRIMR-----GAGLDGLVGIRPVRDNIY-VRPLICSTRDEI 172

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNA 233
             +    N++   D +N +  + R ++R  +           +   + +F D     N  
Sbjct: 173 EKYCSLNNLNPRIDKTNLETLYSRNKIRLQLIPYIQENFNKDIIKVLNRFSDTIKIDNEY 232

Query: 234 VAMLIPKYLTVH---MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           ++ +  +    H       + IS++       +L  ++R+S  I  G +     +  ER+
Sbjct: 233 LSYISQEKFKKHCDIKGEKVIISKEAFLEKEAILSRIIRMSLKIVTGNL-----KDFERI 287

Query: 291 MLF 293
            + 
Sbjct: 288 HIL 290


>gi|242240378|ref|YP_002988559.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech703]
 gi|242132435|gb|ACS86737.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii Ech703]
          Length = 448

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 83/406 (20%), Positives = 144/406 (35%), Gaps = 35/406 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +   +  LVA SGG DS  LL  +  +        I+  A  V H L   A     + 
Sbjct: 17  RQIDADSRFLVAYSGGLDSCVLLHLMMRLQQQL---PIEVRAAYVHHGLNPRADAWADHC 73

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C   RI   V++      + G+ A+AREARYA +    +      ++TA   DDQ E
Sbjct: 74  RRQCQLWRIPFEVLTVHVDARRGGIEASAREARYAALRTSLQPQ--ETLLTAQHQDDQSE 131

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R     G+                  RP L   RE +  +     + W ED S
Sbjct: 132 TFLLALKRGSGPAGLASMAAFSASGAFRQ---RRPLLNMSREQLACYANTHQLRWIEDDS 188

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N+D+RF+R  +R  +    L  L  +   F     +     A        +   ++  + 
Sbjct: 189 NSDERFDRNFLRLRI----LPLLKQRWPHFPSAVARSAELCAEQEQLLDELLAEALAGMC 244

Query: 254 Q--------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302
                     +  +     F LLR   A  G +  +P    + R+ L     +      +
Sbjct: 245 NPQGGLAIGALRPLSPARRFALLRRWLASRGAK--MPARDQLSRLWLEVACCREDAEPSL 302

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETT----VWDGRYQFQNLSDSLIQIGPQS 358
            +GR  + R    L++   + ++   +L  +       + DG  + +  S+       + 
Sbjct: 303 LLGRWQVRRFRGDLYLLPVMNSVKACVLAWQPEIGALPLPDGLGELRLSSEKTGACIRRP 362

Query: 359 YRKADV-----PSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399
            R   V      SG   I+ ++    +      +  + P+ R  T 
Sbjct: 363 QRHETVTVRFSASGDVHIVGRQHGRHIKKLW-QELGVPPWLRDRTP 407


>gi|52078562|ref|YP_077353.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis ATCC 14580]
 gi|52783924|ref|YP_089753.1| YacA [Bacillus licheniformis ATCC 14580]
 gi|61216472|sp|Q65PF4|TILS_BACLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52001773|gb|AAU21715.1| tRNA(Ile)-lysidine synthetase [Bacillus licheniformis ATCC 14580]
 gi|52346426|gb|AAU39060.1| YacA [Bacillus licheniformis ATCC 14580]
          Length = 476

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 102/216 (47%), Gaps = 12/216 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++  VSGG DSM LL ALH  +   +       A  VDH  R E ++ ++R+V D C   
Sbjct: 20  LIAGVSGGPDSMALLHALHHTVPASA----TLIAAHVDHMFRGEESERDMRFVQDYCEAE 75

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    V        ++      AAARE RYA   E  K   A  ++  H  DDQ+ET+ 
Sbjct: 76  GIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQVETML 135

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  +     G+GL+G+     +D   W+ RPFL+  ++D+ ++  +  I +  DPSN++
Sbjct: 136 MKMAKGT--VGIGLAGIQPKRRFDSG-WLLRPFLKLSKDDLLAYCKENRIPFRTDPSNSE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
           D + R R R  V            K+FQ +   +  
Sbjct: 193 DDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTE 228


>gi|114706794|ref|ZP_01439694.1| PP-loop family protein [Fulvimarina pelagi HTCC2506]
 gi|114537742|gb|EAU40866.1| PP-loop family protein [Fulvimarina pelagi HTCC2506]
          Length = 458

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 96/342 (28%), Positives = 152/342 (44%), Gaps = 20/342 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             P  +L+AVSGG DS+ LL+    + +          A +V+H LR  A  E  +V++V
Sbjct: 35  PSPQRLLIAVSGGPDSLALLVLASRLPN----LVFAVHAATVNHGLRREADMEAAHVAEV 90

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             RL + H  ++W+       L AAAREARY L++E A+ I A+ I+TAH   DQ+ETV 
Sbjct: 91  SQRLGVPHETLTWEGWDGSGNLQAAAREARYRLLAEEARRIGASAILTAHHRGDQIETVL 150

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              +R   E    L+GM  +   +  L + RPFL    E + + L +  I+  +DPSN D
Sbjct: 151 QALERGDREN--RLAGMRASRDLEPRLTLVRPFLEIPAEQLWAVLAEAGIASVDDPSNAD 208

Query: 197 DRFERVRVRRFVRD---------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            RF RVR R  +           +D+       +  +++ +    +  M     +     
Sbjct: 209 RRFTRVRHRHAIAGMSDERIADIMDVQRRAAATRAREEIALAGTVSTMMAHGDLIFTEEG 268

Query: 248 SIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIG 305
             +AI  D   +  S     LL       GG    P   ++ R+   L+    GC  ++G
Sbjct: 269 GGVAIGMDAFRVMPSVEAEDLLARVVRAAGGSTRPPERSAVARLAQKLRGRAEGCATTLG 328

Query: 306 RVVIDRRANFLWITRA--VRNLPTLILYPE-ETTVWDGRYQF 344
              +    N + I R      LP++      +  V+DGR+  
Sbjct: 329 GARLLNDGNVIQIHREYGRTGLPSIAEPWRLDRLVFDGRFDI 370


>gi|297528435|ref|YP_003669710.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3]
 gi|297251687|gb|ADI25133.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. C56-T3]
          Length = 464

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 109/249 (43%), Gaps = 17/249 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ VR F+     L   A ++V VSGG DS+ LL    S+   R   K++  A  VDH  
Sbjct: 2   IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++E+ +V   C   RI        V         G   AAR  RY   +E  +  
Sbjct: 59  RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    KG   +G+     +    ++ RPFL   R +I
Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFH-GGYLIRPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234
            ++  Q  +S   DPSN +D + R R R  +  +   +   L+ + +++ ++  +    +
Sbjct: 176 EAYCRQMGLSPRRDPSNEEDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235

Query: 235 AMLIPKYLT 243
             L    L 
Sbjct: 236 EELAADALN 244


>gi|288957828|ref|YP_003448169.1| cell cycle protein [Azospirillum sp. B510]
 gi|288910136|dbj|BAI71625.1| cell cycle protein [Azospirillum sp. B510]
          Length = 448

 Score =  222 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 112/398 (28%), Positives = 174/398 (43%), Gaps = 24/398 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DS+ L + L   +++         A++VDH LR  +  E   V    +RL 
Sbjct: 28  IAVGVSGGGDSVALALLLRHWVAEHGG---SLLALTVDHGLRPDSAAEASAVGRTMARLD 84

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + H V+ W+  KP TGL AAAR AR+ L++          +  AH  DDQ ETV +R  R
Sbjct: 85  VPHHVLRWEGEKPSTGLQAAARAARHRLLATACAEAGILHLALAHHRDDQAETVLLRLAR 144

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  L+GM      D  + I RP L    + + +      + W EDPSN + RF R
Sbjct: 145 GSGVDG--LAGMAPVRA-DGPVRIIRPLLGFPHDRLLATCRAEGVGWIEDPSNANPRFAR 201

Query: 202 VRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            R+R          +D   L    ++    R  +  A A L+    T+H    I +++  
Sbjct: 202 ARLRAASDLLGGEGLDADRLSEVARRAGRARAALEQATAALLADAATIHAEGWITLARGP 261

Query: 257 LN-IDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
           L+   + +    L  + A+ GG  + P    ++ER++  L +G+ G  ++G  V+  R  
Sbjct: 262 LSAAPAEIALRALGRTLAVVGGAAAHPVRDEALERLLGTLAAGRGG--TLGGCVVRHRRG 319

Query: 315 FLWITRAVRNLPT-LILYPEETTVWDGRYQF-----QNLSDSLIQIGPQSYRK--ADVPS 366
            + I R    +   L + P    +WDGR+        N   ++  +G   +R+  A   +
Sbjct: 320 AIMIAREPAAVTERLTVPPGGRVLWDGRFDLWLSPRWNRPVTVAALGAAGWREWVARPAA 379

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTKFDLP 403
           G PP +      S+PS   G  LL  P       FD  
Sbjct: 380 GRPPDLPVPVRESLPSLWSGTELLDLPMVGGGHGFDAD 417


>gi|126173704|ref|YP_001049853.1| Fis family transcriptional regulator [Shewanella baltica OS155]
 gi|125996909|gb|ABN60984.1| transcriptional regulator, Fis family [Shewanella baltica OS155]
          Length = 476

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 134/345 (38%), Gaps = 40/345 (11%)

Query: 2   FLSPIES------VRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF 53
           F  P+ +      +R F+  + L     +++A SGG DS  L   L            + 
Sbjct: 5   FDEPLAAGDLSAHIRAFLVEQPLAPDCKLVLAYSGGVDSEVLAFGLSQFARQHPEFHYQL 64

Query: 54  SAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISE 112
             + V H L + A    ++  +      +  +V     ++ P+  L A AR+ RY  I  
Sbjct: 65  --VYVHHGLSDNADSWAQHCLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIER 122

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           H       +++TAH  DDQLET+ +  +R +  KG+   G    +     L   RP L  
Sbjct: 123 HLSAN--DVLLTAHHEDDQLETILLALKRGHGPKGLAAMGQVQALAQGRQL---RPLLDI 177

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            RE I ++  Q+ +   ED SN DD+++R  +R       L  +     ++  +    + 
Sbjct: 178 SREQIEAYAKQQGLVHIEDESNQDDKYDRNFLR-------LEIIPRLKARWPSIATTASR 230

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLL--------------FYLLRVSAAICGGQ 278
           + A+   +  T+ ++    +   +                      +  L +   I    
Sbjct: 231 SAALCAEQQATLDVQVSERLPLWLTQAPYHTQSVFKLDGFAEQSADWQALLLRGFIESQG 290

Query: 279 ISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRANFLWITR 320
            +LP    + +++   L  K   +  + +G   I R AN +++ +
Sbjct: 291 FALPSKVQLNQIITQVLTAKDDAKVHIRVGECEIRRFANQVYLFK 335


>gi|331089912|ref|ZP_08338804.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330403144|gb|EGG82705.1| hypothetical protein HMPREF1025_02387 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 512

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 121/300 (40%), Gaps = 24/300 (8%)

Query: 15  SLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72
            ++    +++A VSGG+DS+ LL+ L S+   R     +     V+HCLR  A D +  Y
Sbjct: 45  HMIEHGDVVIAGVSGGADSVCLLLTLCSL---REKFGFEVKVCHVNHCLRGAAADADEEY 101

Query: 73  VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V  +C  L +   V    V     K +     A RE R     +       T I TAH  
Sbjct: 102 VKKLCGELGVECRVFRKEVELIAEKRKQSCEEAGREVRREAFEQMCAENGGTKIATAHHR 161

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV +   R     G G+ G+C  +    N    RP L   R+ I S+L +R I W
Sbjct: 162 DDQAETVLLNIAR-----GTGIRGLCGIVPVRDNR--IRPLLSLTRDRIESYLRERGIVW 214

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY-LKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
             D +N +D + R R+R  V  +  + +    +K  + L  +           YL   +R
Sbjct: 215 RVDATNEEDDYTRNRIRHKVLPVLENEVNDQTVKHLESLSRQAEEICE-----YLDYSVR 269

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLFLKSGKRGCVSIG 305
            +      +   D       + +         S P  R   +++ +  ++ G++   S  
Sbjct: 270 QLWKTCVSVRKKDQEQKESPIELVIEKESFFQSFPAVRKLLLQKCIGKVRGGQKDLTSAH 329


>gi|320540048|ref|ZP_08039704.1| putative tRNA(Ile)-lysidine synthetase [Serratia symbiotica str.
           Tucson]
 gi|320029897|gb|EFW11920.1| putative tRNA(Ile)-lysidine synthetase [Serratia symbiotica str.
           Tucson]
          Length = 442

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 89/403 (22%), Positives = 152/403 (37%), Gaps = 31/403 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
              L     +LVA SGG DS  LL  L  +       + +  A+ V H L   A     +
Sbjct: 11  AHQLGEHRQVLVAFSGGLDSTVLLHLLAQLRQQ--HPEFQLRAVHVHHGLSAFADTWADH 68

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               C+  R+  +V   +      G+ AAAR ARYA  +   K     +++TA   DDQ 
Sbjct: 69  CGRQCAAWRVPLTVQRVQVDARAGGIEAAARTARYAAFNATLKA--DEILITAQHLDDQS 126

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R     G+     C  +    +  + RP L C R  + ++  Q  +SW +D 
Sbjct: 127 ETFLLALKRGSGPAGLSAMAACGRL---ADHVLLRPLLGCSRLRLEAYAQQHQLSWIDDD 183

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249
           SN + RF+R  +R  V    L  L L+   F     +  +  A    L+ + L   +R++
Sbjct: 184 SNQNPRFDRNFLRLQV----LPLLNLRWPHFTSAVARSASLCAEQEQLLDELLADQLRTL 239

Query: 250 IAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGC 301
           +A       +++L       F LLR    I    ++LP    ++ +       +      
Sbjct: 240 LAEDNSLVIEELLGCSPACRFALLRRW--IARHDVTLPSREQLQHLWDEVALSRVDAVPR 297

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
           + +G   I R    L++   + NL  + L    T           L D L  +     + 
Sbjct: 298 LQLGTYQIRRFHGRLYLQPLMANLRDIRLNWSRTA-------PLTLPDGLGHLISGKGKV 350

Query: 362 ADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404
                     ++ R  +    +  G+    P  +   + D+P 
Sbjct: 351 HLRSPQPAQQVSVRFSAQGSVRIVGRAHSRPIKKLWQELDVPP 393


>gi|332970936|gb|EGK09910.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Desmospora sp. 8437]
          Length = 477

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 91/418 (21%), Positives = 148/418 (35%), Gaps = 36/418 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L  ++        L   + +LV VSGG DS  LL AL  +     +   K +A+ V+H 
Sbjct: 3   MLEQMKKTILAHHMLPEGSSVLVGVSGGPDSTALLHALSRIAPTHGW---KVAAVHVNHG 59

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKT 116
           LR E ++ + +YV   C   +I   V    V    ++      A AR  RYA     A+ 
Sbjct: 60  LRGENSRGDEKYVRTCCEHWQIPCHVEQVGVRQVLAQKGGNKQAVARSLRYAAFLRVARR 119

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + A  +  AH  DDQ+ET+ MR  R       GL+G+  T  +   L I RP L   R D
Sbjct: 120 VGAECLALAHQADDQVETLLMRLIRGTGP--AGLAGIPATREWR-GLRIVRPLLEVWRSD 176

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVK 229
           + ++  +  ++   D SN D R  R R+R  +              L+       D    
Sbjct: 177 VEAYCTRYGLTPRLDESNRDPRHTRNRIRHHLLPGLESYNSRVKEVLFQLAHLAADEEKH 236

Query: 230 VNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAIC-----GGQISLPG 283
             + V     + +T   +    +  +  L +   L   ++++             ++L G
Sbjct: 237 WASLVEKEARRVITDSGQQWFEVDTRAFLELGVALQRRVIKLILNCLVEDDENETVTLDG 296

Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV---------RNLPTLILYPEE 334
              + R+              G V  +R    L I +A          +  PT +  P E
Sbjct: 297 VERIRRL-AMSSDPSGETALPGGVRAERIYRQLRILKAASAARDEEGEKMAPTRLPIPGE 355

Query: 335 TTVWDGRYQFQNLSDSLIQIGPQ-SYRKADVPSGIPPIIAQR-ALSSMPSKEGGKPLL 390
                GR +    S          +    D     P +  +R      P    G   +
Sbjct: 356 VRYPAGRIRVWTDSRPPFSPTKDRALFDLDQLEAAPVVRPRRPGDRVQPLGMNGTKKV 413


>gi|28899075|ref|NP_798680.1| cell cycle protein MesJ [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839744|ref|ZP_01992411.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio
           parahaemolyticus AQ3810]
 gi|260362390|ref|ZP_05775345.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus K5030]
 gi|260876843|ref|ZP_05889198.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AN-5034]
 gi|260897275|ref|ZP_05905771.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus Peru-466]
 gi|61217347|sp|Q87MF4|TILS_VIBPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28807299|dbj|BAC60564.1| cell cycle protein MesJ [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746728|gb|EDM57716.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio
           parahaemolyticus AQ3810]
 gi|308085351|gb|EFO35046.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus Peru-466]
 gi|308091370|gb|EFO41065.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus AN-5034]
 gi|308113972|gb|EFO51512.1| tRNA(Ile)-lysidine synthase [Vibrio parahaemolyticus K5030]
          Length = 438

 Score =  222 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 132/335 (39%), Gaps = 28/335 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ++VA SGG DS    + L  +   R    +   A+ V H L E A            + 
Sbjct: 21  KVVVAFSGGVDSR---LLLELLRRYREENSLSCHAVYVHHGLSENADIWADKCQVWAKQA 77

Query: 81  RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            I+ SV     ++     +   AREARY  ++ H       L++T    DDQ+ET  +  
Sbjct: 78  GISCSVERVNLDTNSGESIELLAREARYEALARHINR--GDLLLTGQHADDQVETFLLAL 135

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG  LS M +++ +     + RP L  +RE I +      + W ED SN D R+
Sbjct: 136 KRGSGPKG--LSSMAESMPFA-GGTLVRPLLNTKREQIEATAKNIGLEWVEDESNQDTRY 192

Query: 200 ERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R  +         +++  +++   L  +    +  L+       +++ +++S D 
Sbjct: 193 DRNFLRHRIVPELSERWPSIHQAVQRSASLCAQQEALLDELLGSVFARALQADLSLSIDE 252

Query: 257 LNIDSTL-LFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRR 312
           L I S L    L+R+  +      ++P    +  +       +      + + +  I R 
Sbjct: 253 LAIHSELAQARLIRMWLSKL--NANMPSQTQLRLIWQEVALAQQDANPKLKLKQGEIRRF 310

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
            N L+           + +  + T W G  Q    
Sbjct: 311 QNKLYW----------VTHRADVTSWQGHIQIDEP 335


>gi|332994188|gb|AEF04243.1| cell cycle protein MesJ [Alteromonas sp. SN2]
          Length = 437

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 129/326 (39%), Gaps = 25/326 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S   P  ++VA SGG DS  LL ALH      S       A+ + H L   A   +R+  
Sbjct: 20  SFRAPPLLVVAYSGGVDSSLLLHALHVFRKQTSTP---VHAVHIHHGLSNNADTWLRHCQ 76

Query: 75  DVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             C +L I  +          +  L A AR+ARY ++ E   T N  +++     +DQLE
Sbjct: 77  SECDKLSIPLTHYHVAVDNGARKSLEAEARDARYKVLHEFCHTHNG-VLLLGQHAEDQLE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV ++ +R    +G+   G      +   +   RP L  ++ DI     + ++ W  D S
Sbjct: 136 TVLLQLKRGAGPQGLSGMGAQQ---WRNGVLTLRPMLALQKSDIVDAANRLDLQWVNDES 192

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSII 250
           N DDR++R  +R  +    + AL  +  +  +  ++     A    L+ +   +++   +
Sbjct: 193 NADDRYDRNFLRNQI----IPALSERWPQLSNTALRSAQLCAEQTALVTEQAEIYLSQCL 248

Query: 251 AIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVS 303
                    ++L +       +LR           LP    + ++  ML  K      VS
Sbjct: 249 VTDTQLKGAELLTLSKNWQRAVLRQWF--SKQSALLPSQAQLMQIENMLMAKQDAAPEVS 306

Query: 304 I-GRVVIDRRANFLWITRAVRNLPTL 328
                +     +  W+++    +P  
Sbjct: 307 FSWGKLARFNNDLYWLSKRNTQVPQA 332


>gi|153815236|ref|ZP_01967904.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756]
 gi|317502308|ref|ZP_07960477.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847495|gb|EDK24413.1| hypothetical protein RUMTOR_01470 [Ruminococcus torques ATCC 27756]
 gi|316896264|gb|EFV18366.1| hypothetical protein HMPREF1026_02421 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 488

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 75/300 (25%), Positives = 121/300 (40%), Gaps = 24/300 (8%)

Query: 15  SLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72
            ++    +++A VSGG+DS+ LL+ L S+   R     +     V+HCLR  A D +  Y
Sbjct: 21  HMIEHGDVVIAGVSGGADSVCLLLTLCSL---REKFGFEVKVCHVNHCLRGAAADADEEY 77

Query: 73  VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V  +C  L +   V    V     K +     A RE R     +       T I TAH  
Sbjct: 78  VKKLCGELGVECRVFRKEVELIAEKRKQSCEEAGREVRREAFEQMCAENGGTKIATAHHR 137

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV +   R     G G+ G+C  +    N    RP L   R+ I S+L +R I W
Sbjct: 138 DDQAETVLLNIAR-----GTGIRGLCGIVPVRDNR--IRPLLSLTRDRIESYLRERGIVW 190

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY-LKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
             D +N +D + R R+R  V  +  + +    +K  + L  +           YL   +R
Sbjct: 191 RVDATNEEDDYTRNRIRHKVLPVLENEVNDQTVKHLESLSRQAEEICE-----YLDYSVR 245

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLFLKSGKRGCVSIG 305
            +      +   D       + +         S P  R   +++ +  ++ G++   S  
Sbjct: 246 QLWKTCVSVRKKDQEQKESPIELVIEKESFFQSFPAVRKLLLQKCIGKVRGGQKDLTSAH 305


>gi|315168156|gb|EFU12173.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1341]
          Length = 497

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           Q    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 QQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|319638353|ref|ZP_07993115.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa C102]
 gi|317400102|gb|EFV80761.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa C102]
          Length = 451

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 82/319 (25%), Positives = 130/319 (40%), Gaps = 26/319 (8%)

Query: 19  PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P+H +  V +SGG DS+ LL  L  +   R F +    A+ V H L   A    ++  D 
Sbjct: 21  PSHTVFEVGLSGGLDSVVLLHLLDRM---REFRRFDLRAVHVHHGLSTNADSWAKFCQDY 77

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C RL +A  V      K   GL AAAR ARY   S+  K I    I+ AH  +DQ+ET  
Sbjct: 78  CQRLNVALRVCRVNVEKHGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           + + R    +GM    +   +  ++ +W  RP L   R+++  +  Q  + + ED SN D
Sbjct: 134 LSAVRGGGLRGMAAMPVWRDLNEEIQIW--RPLLAFSRQELAEYAQQWRLPFVEDESNED 191

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
             + R  +R       L     ++  F+         +   +     +       IS D 
Sbjct: 192 SGYLRNWMRNQ----ALPQWQQRIPNFEQQICANIRLLQEDLQLLDELAESEYQRISPDG 247

Query: 257 L-------NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRV 307
           +            L   LL     +     SLP Y S+      L++ ++  +S+  G +
Sbjct: 248 IFSISLWRQCTPLLRRRLL--WYFLRKQTESLPSYHSIADFARVLETAEQAQLSLPNGEL 305

Query: 308 VIDRRANFLWITRAVRNLP 326
           V  R   F+W     + LP
Sbjct: 306 VAYRDQLFIWQENEFQRLP 324


>gi|319648591|ref|ZP_08002805.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2]
 gi|317389358|gb|EFV70171.1| tRNA(Ile)-lysidine synthase [Bacillus sp. BT1B_CT2]
          Length = 469

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 12/216 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++  VSGG DSM LL ALH  +   +       A  VDH  R E ++ ++R+V D C   
Sbjct: 13  LIAGVSGGPDSMALLHALHHTVPASA----TLIAAHVDHMFRGEESERDMRFVQDYCEAE 68

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I    V        ++      AAARE RYA   E  K   A  ++  H  DDQ+ET+ 
Sbjct: 69  GIQCEAVQIDVLAFAAENNLNKQAAARECRYAFFQELMKRHRAEYLVLGHHGDDQVETML 128

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  +     G+GL+G+     +D   W+ RPFLR  ++D+ ++  +  I +  DPSN++
Sbjct: 129 MKMAKGT--VGIGLAGIQPKRRFDSG-WLLRPFLRLSKDDLLAYCKENRIPFRTDPSNSE 185

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
           D + R R R  V            K+FQ +   +  
Sbjct: 186 DDYTRNRFRHHVLPFLKKESEDVHKRFQSVSEFLTE 221


>gi|154684586|ref|YP_001419747.1| YacA [Bacillus amyloliquefaciens FZB42]
 gi|154350437|gb|ABS72516.1| YacA [Bacillus amyloliquefaciens FZB42]
          Length = 472

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 127/333 (38%), Gaps = 29/333 (8%)

Query: 6   IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++SV  F ++         I+  VSGG DSM LL  L+      S       A  VDH  
Sbjct: 1   MKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSMLNKHFGHSSV----IIAAHVDHQF 56

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++++++V   C    I    V         K +    AAAR+ RY    +     
Sbjct: 57  RGPESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFEDLMTKH 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +  AH  DDQ+ET+ MR  +     G GL+GM     +    W+ RPFL   +++I
Sbjct: 117 QAKFLALAHHGDDQVETMLMRLAKGTL--GAGLAGMQPVREFASG-WLIRPFLYAAKDEI 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +  Q  +S+  D SN  D + R R R+ V     H      K FQ +   +       
Sbjct: 174 LEYCRQEGLSYRTDESNAKDDYTRNRFRKTVLPFLKHESPDVHKMFQKVSEALTED-EQY 232

Query: 238 IPKYLTVHMRSIIAISQD---------ILNIDSTLLFYLLRV-SAAICGGQISLPGYRSM 287
           +       M  +I    D         +L +   L    +++    +     S    R +
Sbjct: 233 LQSLTKERMNKVITSKSDTSVEVNSSQLLALPIPLQRRGVQLILNYLYENVPSSFSARHI 292

Query: 288 ERVMLFLKSGKRGC---VSIGRVVIDRRANFLW 317
           ++ + + ++G          G  V+      L+
Sbjct: 293 QQFLEWAENGSASGVLDFPKGLKVVKSYQTCLF 325


>gi|56418595|ref|YP_145913.1| hypothetical protein GK0060 [Geobacillus kaustophilus HTA426]
 gi|61216398|sp|Q5L3T3|TILS_GEOKA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|261824766|pdb|3A2K|A Chain A, Crystal Structure Of Tils Complexed With Trna
 gi|261824767|pdb|3A2K|B Chain B, Crystal Structure Of Tils Complexed With Trna
 gi|56378437|dbj|BAD74345.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 464

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 17/249 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ VR F+     L   A ++V VSGG DS+ LL    S+   R   K++  A  VDH  
Sbjct: 2   IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++E+ +V   C   RI        V         G   AAR  RY   +E  +  
Sbjct: 59  RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    KG   +G+     +    ++ RPFL   R +I
Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFH-GGYLIRPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234
            ++  Q  +S   DPSN  D + R R R  +  +   +   L+ + +++ ++  +    +
Sbjct: 176 EAYCRQMGLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235

Query: 235 AMLIPKYLT 243
             L    L 
Sbjct: 236 EELAADALN 244


>gi|311070714|ref|YP_003975637.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942]
 gi|310871231|gb|ADP34706.1| tRNAile lysidine synthetase [Bacillus atrophaeus 1942]
          Length = 472

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 147/370 (39%), Gaps = 32/370 (8%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + SV+ F       +  A I+V VSGG DSM LL  LH+     S       A  VDH  
Sbjct: 1   MNSVKDFFEKYNLHLEGATIIVGVSGGPDSMALLNFLHTRFGRASV----IIAAHVDHSF 56

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R   +++++R+V   C   RI    V    S      +    AAARE RY    +     
Sbjct: 57  RGAASEEDMRFVQAYCKTERITCETVKMDVSAYAEMNRLNKQAAARECRYRFFKDLMVKH 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +  AH  DDQ+ET+ MR  +     G GL+G+     ++   W+ RPFL   +ED+
Sbjct: 117 QADYLALAHHGDDQVETMLMRLAKGTL--GAGLAGIQPVRKFETG-WLIRPFLSITKEDV 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++ L+ ++ +  D SN  D + R R R+ V        +   +KFQ +   +      L
Sbjct: 174 LTYCLEHDVRYRTDESNAKDDYTRNRFRKAVLPFLKQESHDVHRKFQKVSESLTEDEQYL 233

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL----RVSAAICGGQIS--LPGY---RSME 288
                    + I + S+  + ++S  L  L     R    +    +   +P     R ++
Sbjct: 234 QSLTKDEMNKVITSQSETSVELNSAALLALPMPLQRRGVQLILNYLYENVPSSFSARHIQ 293

Query: 289 RVMLFLKSGKRGC---VSIGRVVIDRRANFLW-----ITRAVRNLPTLILYPEETTVWDG 340
           + + + K+G          G  V+      L+       + V     +     ET +  G
Sbjct: 294 QFLEWAKNGSPSGVLDFPNGLKVVKSYQTCLFTFEQLQCKEVPFEYQISGAAGETVILPG 353

Query: 341 RYQFQNLSDS 350
             Q     D+
Sbjct: 354 GSQITVERDA 363


>gi|254786815|ref|YP_003074244.1| tRNA(Ile)-lysidine synthase domain containing protein
           [Teredinibacter turnerae T7901]
 gi|237683861|gb|ACR11125.1| tRNA(Ile)-lysidine synthase domain containing protein
           [Teredinibacter turnerae T7901]
          Length = 436

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 90/409 (22%), Positives = 146/409 (35%), Gaps = 36/409 (8%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           ++ +   L     + +A SGG DS  LL     +  +         A+ V+H L   A+ 
Sbjct: 7   LQAYETQLRDAKGVWIAFSGGLDSTVLLHQAAQLGLEH------LQAVHVNHQLSPNAQA 60

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             R+  D  + L +  +V +        G+  AAR+ RY + SE  K     +++TAH  
Sbjct: 61  WQRHCEDTANSLGVPLTVRTVSVDDFGGGVEDAARKLRYQIFSELLKP--GEILLTAHHA 118

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +DQ ET+  R  R    KG  L G+  +        + RPFL   R  + ++     + W
Sbjct: 119 NDQAETLIYRLMRGAGLKG--LCGVPRSRNLGRRKTLVRPFLDVARPQLEAWADDHAVRW 176

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            +D SN D  F+R  +R  V           +++       +  +  +L           
Sbjct: 177 IKDESNDDTSFDRNYIRHEVMPALSARWPGAIERIATSASLLAESQELLDAYLDDDLNAC 236

Query: 249 IIA--------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGK 298
            +         I    LN       +LLR    I      +P  + +   R +L      
Sbjct: 237 KLRKERVGESLILNVFLNFSEVRQHHLLRYW--IGRSDCLMPSQQHLAEVRKLLLAAEDA 294

Query: 299 RGCVSIG-----RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG--RYQFQNLS--- 348
           +  VS G        I R  N L++      L   +        WDG  + Q  N S   
Sbjct: 295 KPEVSWGPAGVRGGSIYRYQNRLYL---APRLNYAVEREACYKNWDGVTKLQLGNFSIVG 351

Query: 349 -DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRF 396
             + + + P +YR      G     A R  S    K   +  L P+ R 
Sbjct: 352 KPAEVGLAPGNYRVLFREGGERCQPADRQNSQTLKKLLQEYRLEPWLRD 400


>gi|315151132|gb|EFT95148.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0012]
          Length = 497

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           Q    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 QQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|160886327|ref|ZP_02067330.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483]
 gi|156108212|gb|EDO09957.1| hypothetical protein BACOVA_04336 [Bacteroides ovatus ATCC 8483]
          Length = 426

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 123/343 (35%), Gaps = 47/343 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE    F         ILVA+SGG+DS+ LL  LH+             A   +  LR  
Sbjct: 10  IEKEHLFS----PDDKILVALSGGADSVALLYILHT-------AGYHCEAAHCNFHLRGK 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C R+ I    + +      ++    +  AARE RY    +  K   A 
Sbjct: 59  ESDRDELFVRQLCERMEIHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQAD 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           ++  AH  DD +ET+ +   R     G+         +   N  I RP L   RE+I  +
Sbjct: 119 VVAVAHHQDDSIETILLNLIRGTGITGL-------LGIRPRNGTIVRPLLCINREEIIRY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L      +  D +N +D + R ++R       + +     + L        D+    N  
Sbjct: 172 LQNIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNTLIDTSNYLNDVATIYNKC 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--M 291
           +     K +T     I  + ++       +LF +L                  ++ +   
Sbjct: 232 IEETKKKIITAEGIRICDLVKEP--APEAILFEVL---------HPLGFNSAQIKDITHS 280

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
           L  + GK+ C    RV+ DR     ++           L P +
Sbjct: 281 LHSQPGKQFCSKEWRVIKDRE----FLLIETAESENETLPPFQ 319


>gi|312904628|ref|ZP_07763783.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635]
 gi|310631980|gb|EFQ15263.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0635]
 gi|315160783|gb|EFU04800.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0645]
 gi|315579382|gb|EFU91573.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0630]
          Length = 497

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ S A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKESPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368


>gi|227520048|ref|ZP_03950097.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104]
 gi|227555909|ref|ZP_03985956.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22]
 gi|227072596|gb|EEI10559.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX0104]
 gi|227174966|gb|EEI55938.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis HH22]
 gi|315573571|gb|EFU85762.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309B]
 gi|315582081|gb|EFU94272.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0309A]
          Length = 497

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368


>gi|307278662|ref|ZP_07559732.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860]
 gi|306504722|gb|EFM73922.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0860]
          Length = 497

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    WK+ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWKDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|119946581|ref|YP_944261.1| tRNA(Ile)-lysidine synthetase [Psychromonas ingrahamii 37]
 gi|119865185|gb|ABM04662.1| tRNA(Ile)-lysidine synthetase [Psychromonas ingrahamii 37]
          Length = 460

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 66/305 (21%), Positives = 122/305 (40%), Gaps = 18/305 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS+ LL     + +     K    A  ++H L + A     +  ++C+ L + 
Sbjct: 30  IALSGGLDSVVLLHLFTRLRA--FDKKYSLCAHHINHGLSDNAAHWQLFCENLCASLAVD 87

Query: 84  HSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                    K  +T L A ARE RYA ++     ++ + ++TAH  DDQLETV +  +R 
Sbjct: 88  FCCSPVILEKKNRTSLEALAREKRYACLTG--NLLDNSYLITAHHQDDQLETVLLALKRG 145

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL G+           + RP L   R+ + ++     + W ED SN D  F+R 
Sbjct: 146 SGS--TGLQGIQKMQKLQKG-HLIRPLLNFSRQQLAAYAELFQLDWVEDESNQDQDFDRN 202

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--QDILNID 260
            +R+ +  + L   +  M K       +      L+ +        ++  S  Q +L I+
Sbjct: 203 FIRQTITPL-LKERWPGMGKAVARSANICQEQQQLLDEIALADFNQLVEFSLNQQVLPIE 261

Query: 261 STLLFYLLRVS----AAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRA 313
                 + R +          Q+  P  + ++ +           +  +      + R  
Sbjct: 262 DLAALSIGRRNNLLRFWFKKNQLDYPSAKQLQALWTDVALAIIDAQPLLQFKGYSVRRYR 321

Query: 314 NFLWI 318
           N+L++
Sbjct: 322 NYLYL 326


>gi|261417560|ref|YP_003251242.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61]
 gi|319765217|ref|YP_004130718.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52]
 gi|261374017|gb|ACX76760.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC61]
 gi|317110083|gb|ADU92575.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y412MC52]
          Length = 464

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 17/249 (6%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ VR F+     L   A ++V VSGG DS+ LL    S+   R   K++  A  VDH  
Sbjct: 2   IDKVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSL---RDEWKLQVIAAHVDHMF 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++E+ +V   C   RI        V         G   AAR  RY   +E  +  
Sbjct: 59  RGRESEEEMEFVKRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKH 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    KG   +G+     +    ++ RPFL   R +I
Sbjct: 119 QAGYVAVGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFH-GGYLIRPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234
            ++  Q  +S   DPSN  D + R R R  +  +   +   L+ + +++ ++  +    +
Sbjct: 176 EAYCRQMGLSPRRDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQYSEMMAEDEQFL 235

Query: 235 AMLIPKYLT 243
             L    L 
Sbjct: 236 EELAADALN 244


>gi|260173564|ref|ZP_05759976.1| putative cell-cycle protein [Bacteroides sp. D2]
 gi|315921832|ref|ZP_07918072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2]
 gi|313695707|gb|EFS32542.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D2]
          Length = 426

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 123/343 (35%), Gaps = 47/343 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE    F         ILVA+SGG+DS+ LL  LH+             A   +  LR  
Sbjct: 10  IEKEHLFS----PDDKILVALSGGADSVALLYILHT-------AGYHCEAAHCNFHLRGK 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C R+ I    + +      ++    +  AARE RY    +  K   A 
Sbjct: 59  ESDRDELFVRQLCERMEIHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQAD 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           ++  AH  DD +ET+ +   R     G+         +   N  I RP L   RE+I  +
Sbjct: 119 VVAVAHHQDDSIETILLNLIRGTGITGL-------LGIRPRNGTIVRPLLCINREEIIRY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L      +  D +N +D + R ++R       + +     + L        D+    N  
Sbjct: 172 LQNIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNTLIDTSNYLNDVATIYNKC 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--M 291
           +     K +T     I  + ++       +LF +L                  ++ +   
Sbjct: 232 IEETKKKIITAEGIRISDLVKEP--APEAILFEVL---------HPLGFNSAQIKDITHS 280

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
           L  + GK+ C    RV+ DR     ++           L P +
Sbjct: 281 LHSQPGKQFCSKEWRVIKDRE----FLLIETAESENETLPPFQ 319


>gi|325295220|ref|YP_004281734.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065668|gb|ADY73675.1| tRNA(Ile)-lysidine synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 454

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/366 (23%), Positives = 144/366 (39%), Gaps = 40/366 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E+       +   + +LVA+SGG DS+ LL  L  +       KI  +A  ++H
Sbjct: 1   MLKDKVENTIKNFSLISENSKVLVALSGGPDSVTLLHILLQLKEKL---KIDIAAAHLNH 57

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI 117
            LR E ++ +  +V  +CS   I         K       + A ARE RY  + E  K I
Sbjct: 58  MLRGEESERDENFVKKLCSDWGIPLFTKRENIKEISKGKNIEAVAREVRYRFLEETLKKI 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   I T HT  D +ETV +   +    KG           +     I RP     RE+I
Sbjct: 118 NGDYIATGHTASDLVETVILNLTKGTGIKGF-------RGFFPKREKIIRPLFEVTREEI 170

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
            +++ + NI +  D SN    FER  +R       + +      A+       +++   +
Sbjct: 171 ENYIKENNIPFVVDSSNLKTEFERNLIRIEVIPVLKKINPKLEEAVLRNTSILREIEDYI 230

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF--YLLRVSAAICGGQISLPGYRSME 288
           N  V  L+ KYL+   ++   I  + L     +L    L++V   I G  +S      +E
Sbjct: 231 NKEVENLLRKYLS---KNQFCIPLEKLKKLEPVLRKELLIKVFKTITGRTLSYKKLEFIE 287

Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITR----------AVRNLPTLILYP---EET 335
            V+   +  +         VI +      I +           ++ +P+ +  P    E 
Sbjct: 288 NVIKKKEYKELKLTR--GYVIFKDQENFCIEKENGKEKEYFIEIKEIPSKVETPMGIVEF 345

Query: 336 TVWDGR 341
            +WDG+
Sbjct: 346 DLWDGK 351


>gi|303240184|ref|ZP_07326704.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2]
 gi|302592275|gb|EFL62003.1| tRNA(Ile)-lysidine synthetase [Acetivibrio cellulolyticus CD2]
          Length = 465

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 79/352 (22%), Positives = 137/352 (38%), Gaps = 40/352 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76
               ++V VSGG DS+ LL  L  +   R    +   A+ ++H LR   +  +  YV  +
Sbjct: 17  KGDRVVVGVSGGPDSVCLLHVLWRL---RKDFDLYIVAVHINHMLRGSESCRDENYVKSL 73

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           CS L I    +     K        L  A RE RY      A ++ A+ I  AH  +DQ 
Sbjct: 74  CSELEIELQSICVDIKKVSKEKNMSLEEAGREERYRHFEIVADSVGASRIAVAHNKNDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV M   R     G  L GM           I RP L   R +I ++  + +++   D 
Sbjct: 134 ETVLMNIIRGSGLDG--LKGMDYIR-----GRIIRPLLDIERNEIEAYCRENSLNPITDS 186

Query: 193 SNTDDRFERVRVR-------------RFVRDID-LHALYLKMKKFQDLRVKVNNAVAMLI 238
           SN +D + R ++R              FV+ +D L+ L      F D ++K +   A+L 
Sbjct: 187 SNLEDIYSRNKIRLNVIPYIDTLFGCNFVKSVDRLNRLVKDDIDFIDGKIKKSYYAAVLR 246

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
            +   V +     +   I  +   +   ++R +     G +       +ERV+  + +G+
Sbjct: 247 KENEEVEL-----LLGKIKKMHIAVKRRIIRKAINEVKGNVKGIESLHIERVLNMIDNGR 301

Query: 299 RG-CVSIGRVVIDRRANFLWITRAVRNLPTL-----ILYPEETTVWDGRYQF 344
            G  + +  + + +    +   +  +          +  P  T   D R+  
Sbjct: 302 VGSRLDLPGIKVGKSYESIKFYKDEKPADKFDFVASLCIPGITKSRDNRHLI 353


>gi|257871355|ref|ZP_05651008.1| PP-loop family protein [Enterococcus gallinarum EG2]
 gi|257805519|gb|EEV34341.1| PP-loop family protein [Enterococcus gallinarum EG2]
          Length = 461

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 119/251 (47%), Gaps = 12/251 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V  A  L+AVS G DSM LL  +  +    +FG        V+H LRE + DE  ++ D 
Sbjct: 16  VEDATCLLAVSTGVDSMVLLHVIEELFQQGTFG-----VAHVNHNLREASDDEAAFLKDY 70

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    I +    W++  PQ G+ AAARE RY   +E     +   ++TAH  DDQ+ET+ 
Sbjct: 71  CQTRGIPYYERVWQDP-PQNGIEAAAREFRYHFFAETMTLQSYDWLLTAHHADDQMETML 129

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R+   +    SG+     +  N ++ RPFL   +E+IR +  +R I++ ED +N  
Sbjct: 130 MKMVREGRLQ--NASGIKRKQPFG-NGYLIRPFLTIAKEEIRDYARRRGIAYFEDETNQQ 186

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD- 255
             F+R R+R     +        +  FQ L  ++      LI K     + +I+    + 
Sbjct: 187 TLFQRNRLRHQAVPLLKAENPRALDHFQQLSQEMI-YADQLIKKQQADWLATILHEEAEG 245

Query: 256 -ILNIDSTLLF 265
             LN+D    F
Sbjct: 246 YFLNLDELAAF 256


>gi|253576850|ref|ZP_04854175.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843717|gb|EES71740.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 485

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 28/333 (8%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E VR F R     +    I+VAVSGG DS  LL  +  +  D++ G ++     + H LR
Sbjct: 11  EQVRRFGRQEQLWLPGDVIVVAVSGGVDSTVLLHIMKEIAGDKALG-LQLICAHLHHGLR 69

Query: 64  -ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            + A  +  +V ++  RL I        V     +    L  AARE RY  + + A+   
Sbjct: 70  GDEADRDAEFVRELAERLGIPFELGYADVRAYMKETGQSLELAAREKRYEYLHQVAERYG 129

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A+ I  AH  DDQ ETV MR  R       GL+GM      + N+ + RP LR  + D+ 
Sbjct: 130 ASSIALAHHADDQAETVLMRLLRGSGP--SGLAGMRPKR-REKNVELIRPLLRIYKTDLL 186

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
               +  +++ ED SN D    R  +R  V            +    L V        L 
Sbjct: 187 QACRESGLAYVEDSSNLDKEMTRNSIRLDVLPFLGQYNGQLPESLNRLAVLTAAEDDYLH 246

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLF----YLLRVSAAICGGQISLP------GYRSME 288
            + + ++   ++     IL+ ++ L       L R    +      LP       +  +E
Sbjct: 247 QEAMRLY-AELVRTEDGILSFEAPLFSGLHVALQRRLIKLILN--YLPLSTEDRDFVKVE 303

Query: 289 RVMLFLKSGKRGCVSI---GRVVIDRRANFLWI 318
            +       +    S+   G V   R  + +  
Sbjct: 304 AIRQGTIQDRPTTWSLDLGGGVKCVREYDRIRF 336


>gi|332140486|ref|YP_004426224.1| cell cycle protein MesJ [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550508|gb|AEA97226.1| cell cycle protein MesJ [Alteromonas macleodii str. 'Deep ecotype']
          Length = 441

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/324 (22%), Positives = 121/324 (37%), Gaps = 23/324 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L     ++VA SGG DS  LL A   V+  R        A+ V H L E A    R+  
Sbjct: 24  ELPLQTPLVVAYSGGVDSSVLLQA---VIEYREQYNGPIHAVHVHHGLSENADSWARHCE 80

Query: 75  DVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             C    +   +   +     +  + A AR+ RY  +    K I   +++     +DQLE
Sbjct: 81  LQCRLEDVEFHLHRVEVDTSARKSIEAEARKVRYNALLAVCKRIGG-VLLLGQHAEDQLE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV ++ +R    +G+   G    + Y  N  I RP L   + +I +F     + W +D S
Sbjct: 140 TVLLQLKRGAGPQGLAGMG---EVQYRGNTLIMRPMLSLDKAEIVTFADNEMLQWVDDES 196

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N  + F+R  +R  +    +  L  +  +      +     A           R      
Sbjct: 197 NQQNSFDRNFLRNEI----IPHLLDRWPQLTKTVGRSAALCAEQSELVNDSAQRYFEDCK 252

Query: 254 QDILNIDSTLLFYLLRVSAAI-------CGGQISLPGYRSMERVMLFLKSGKRGCVSI-- 304
           +  L +D   L  L R   A+         GQ+S P     E+V+L L++       +  
Sbjct: 253 RTNLRLDGKKLTSLSRPWQAMVIRAWFKAQGQLS-PSKAQAEQVLLMLEAKHDATPEVNF 311

Query: 305 -GRVVIDRRANFLWITRAVRNLPT 327
               VI    +  W+  AV +   
Sbjct: 312 KWGKVIRFDGDLYWVVNAVHDAEP 335


>gi|315171404|gb|EFU15421.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1342]
          Length = 497

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368


>gi|149377460|ref|ZP_01895202.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893]
 gi|149358227|gb|EDM46707.1| hypothetical protein MDG893_09401 [Marinobacter algicola DG893]
          Length = 416

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 140/381 (36%), Gaps = 28/381 (7%)

Query: 31  DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90
           DS+ LL     + +       + SAI ++H L+  A D  R+  D+C  L +   +    
Sbjct: 2   DSVLLLHVTAYLYAHSG----QVSAIHINHQLQPNADDAERFCEDICRELGVPLDIRRVI 57

Query: 91  NSKPQT-------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
            S  +T       G+  AAR ARY +  E        L++ AH  DDQ ETV  R  R  
Sbjct: 58  VSSRETPEIDTSGGVEEAARNARYQVFEEILAP--GELLLMAHHGDDQAETVLFRLLRGT 115

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G+G  GM  T        + RP L   R ++ ++  +  I W EDPSN D+RF+R  
Sbjct: 116 GVVGLG--GMPITRPLGAG-RLYRPLLDFSRAELHAWAAEHGIEWMEDPSNIDERFDRNF 172

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL--NIDS 261
           +R  +  +        + +              L  K   +H +     S ++    + +
Sbjct: 173 LRASIFPLLKSRWPSLISRMGHT-AHSCREADELAGKLAEIHFQQCAGPSGELCLSAVGA 231

Query: 262 TLLFYLLRVSAAICGGQIS----LPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
             L     +     G        +  +  + +  L   + +   +     VI R    L+
Sbjct: 232 LSLAEQKNLLRWWVGHFHYQSPTMADWSQVLQDFLDSPADREPELRGAGFVIRRFRGCLY 291

Query: 318 ITRAVRNLP--TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQR 375
           +      LP    +L P+   +W G ++   L+ S     P    +    +G   I    
Sbjct: 292 LVPEFTELPAGKPVLIPD-RALWWGEWRLT-LAASGKPKTPAPEIRVSTRAGGERIRPAP 349

Query: 376 ALSSMPSK-EGGKPLLAPFSR 395
              S   K    +  + P+ R
Sbjct: 350 GGPSKSLKNWLQEKNVPPWER 370


>gi|313201479|ref|YP_004040137.1| tRNA(ile)-lysidine synthetase [Methylovorus sp. MP688]
 gi|312440795|gb|ADQ84901.1| tRNA(Ile)-lysidine synthetase [Methylovorus sp. MP688]
          Length = 439

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/338 (21%), Positives = 128/338 (37%), Gaps = 22/338 (6%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           ++ F+        +LVA+SGG DS  LL  L ++ ++     I+ SA+ V H L   A  
Sbjct: 5   LQQFITQHHIEGRLLVALSGGLDSCVLLHLLATLPNN---PGIRLSAMHVHHGLSPHADQ 61

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
              +   +C+   I   VV  +  +    GL AAAR  RY       +  +A  ++ AH 
Sbjct: 62  WAEHCQRLCASHAIPLQVVHVQVPRDSGQGLEAAARHLRYEA----MRAAHADYVVLAHH 117

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV ++  R     G G+ G+     +D    + RP L   R  +  +  Q  + 
Sbjct: 118 QDDQAETVMLQLLR-----GAGMRGLAAMASHDAQQRLLRPLLDISRAQLAEYAAQHQLE 172

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVH 245
           W ED SN D  ++R   R+ V  +         K      L      ++ M + +     
Sbjct: 173 WVEDESNQDTHYDRNFCRQQVLPLLEQRFPGAGKALARSALHAAEAESLQMALAELDAAD 232

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCV 302
                A++   L          L     +      LP    ++   R +L      +  +
Sbjct: 233 TLRGNALNVARLQALGETRARNLLRW-WLSSRLRYLPHREHLQEMLRQLLTAADDAKLAL 291

Query: 303 SI---GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
            +     + + R     ++    ++    I++ ++  V
Sbjct: 292 LLDGEQGLWLRRYRGHAYVVAQRKSADLDIVWDQQPVV 329


>gi|302876588|ref|YP_003845221.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B]
 gi|307687263|ref|ZP_07629709.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B]
 gi|302579445|gb|ADL53457.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulovorans 743B]
          Length = 462

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 119/309 (38%), Gaps = 24/309 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           ++VA+SGG DS+ LL   + +   +    +      V+HC+R  A D +  YV ++  +L
Sbjct: 24  VIVALSGGPDSVVLLHVFNEL---KEVYNLTLYVAHVNHCIRGDAADSDEAYVIELSKKL 80

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V+  K  +           A RE RY    E    + A  I  AH  +DQ ETV 
Sbjct: 81  GIEFFVLREKVEEIARDRGISSEMAGREVRYKFFEELKHKLKADKIAVAHNANDQAETVL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    +G       + I    +    RP +   R +I  +  +  ++   D +N +
Sbjct: 141 MRIMRGSGTEG------IEGIKPVRDGVYIRPLIDVSRSEIERYCEENGLNPRIDATNLE 194

Query: 197 DRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAVAMLIPK----YLTVHMRS 248
             + R +VR  +           +   + +  D   K N  +  +  +    Y  V    
Sbjct: 195 TIYSRNKVRLELIPYIQENFNSDIINTLVRLSDTVKKDNEYLEAIANEKYKSYCEVRENK 254

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV-SIGRV 307
           +I IS++  N   ++L  ++R +       +     + +  ++   ++     +  +  +
Sbjct: 255 VI-ISKNAFNEPESILTRVIRKAYNTVAKGLFNFEKKHIYDIIKLQRNNSGKSIDLLHGI 313

Query: 308 VIDRRANFL 316
           +       +
Sbjct: 314 IAYNSYGHI 322


>gi|327534060|gb|AEA92894.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus faecalis OG1RF]
          Length = 497

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368


>gi|315026779|gb|EFT38711.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2137]
          Length = 497

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368


>gi|307276452|ref|ZP_07557575.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134]
 gi|306506932|gb|EFM76079.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2134]
          Length = 497

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 338 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 368


>gi|154505539|ref|ZP_02042277.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149]
 gi|153794197|gb|EDN76617.1| hypothetical protein RUMGNA_03076 [Ruminococcus gnavus ATCC 29149]
          Length = 469

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 136/376 (36%), Gaps = 44/376 (11%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V  F++    L     ++  +SGG+DS+ LL  L  +     F      A+ V+H LR
Sbjct: 3   KKVLNFIQKYHMLQKEDKVIAGISGGADSICLLFVLLRLQEKIGF---DVIAVHVNHGLR 59

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            E AK + R+    C    +   V    V    ++ +  +  A R  R     E      
Sbjct: 60  GENAKRDERFTETFCRERNVPCIVYHENVKEIAAQKKLSVEEAGRLVRRKAFEEVRIRYG 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I  AH  +D  ET+ +   R    +G+       + +  +N ++ RP L   R++I 
Sbjct: 120 GTKIALAHHQNDNAETMLLNLARGTGIRGL-------SGIRPVNGYMIRPLLGINRKEIE 172

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKV 230
            +L +  +S+CED +N  D + R R+R  +  +         +  +   M++   +R  +
Sbjct: 173 YYLKEHQLSYCEDETNAGDEYTRNRIRHQILPMLEEQVNRQAVRHMNETMEQLNQIRDYL 232

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSMER 289
              +       +      ++ +  + +  D  +   +++     + G    L        
Sbjct: 233 EREIEAHCRCVVRQEEEGLLLLWDEWMQCDPVIQNGIIQKCLENLAGTGKDLVSVHVAAV 292

Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWI----------TRAVRNLPTLILYPEET---- 335
             LF K   R       +  +R    + +           R    +P +    +      
Sbjct: 293 AELFEKQSGRKRNLPYNICAERNYEGILLIKQTAERQTECREELIIPGITRLKDRNLRIC 352

Query: 336 -TVW--DGRYQFQNLS 348
            T+W  D  +  + + 
Sbjct: 353 CTIWEKDKNFSIEQIP 368


>gi|299146811|ref|ZP_07039879.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23]
 gi|298517302|gb|EFI41183.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_23]
          Length = 426

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/343 (20%), Positives = 123/343 (35%), Gaps = 47/343 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE    F         ILVA+SGG+DS+ LL  LH+             A   +  LR  
Sbjct: 10  IEKEHLFS----PDDKILVALSGGADSVALLYILHT-------AGYHCEAAHCNFHLRGK 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C R+ I    + +      ++    +  AARE RY    +  K   A 
Sbjct: 59  ESDRDELFVRQLCERMEIHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKECQAD 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           ++  AH  DD +ET+ +   R     G+         +   N  I RP L   R++I  +
Sbjct: 119 VVAVAHHQDDSIETILLNLIRGTGITGL-------LGIRPRNGTIVRPLLCINRKEIIRY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L      +  D +N +D + R ++R       + +     + L        D+    N  
Sbjct: 172 LQNIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNTLIDTSNYLNDVATIYNKC 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--M 291
           +     K +T     I  + ++       +LF +L                  ++ +   
Sbjct: 232 IEETKKKIITAEGIRISDLVKEP--APEAILFEVL---------HPLGFNSAQIKDITHS 280

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
           L  + GK+ C    RV+ DR     ++           L P +
Sbjct: 281 LHSQPGKQFCSKEWRVIKDRE----FLLIETAESENETLPPFQ 319


>gi|29374904|ref|NP_814057.1| hypothetical protein EF0263 [Enterococcus faecalis V583]
 gi|257418646|ref|ZP_05595640.1| predicted protein [Enterococcus faecalis T11]
 gi|61216623|sp|Q839B3|TILS_ENTFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29342362|gb|AAO80128.1| conserved domain protein [Enterococcus faecalis V583]
 gi|257160474|gb|EEU90434.1| predicted protein [Enterococcus faecalis T11]
          Length = 462

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 303 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 333


>gi|307268516|ref|ZP_07549891.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248]
 gi|306515177|gb|EFM83717.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4248]
 gi|315032983|gb|EFT44915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0017]
 gi|315036604|gb|EFT48536.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0027]
          Length = 497

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETLAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|270159842|ref|ZP_06188498.1| tRNA(Ile)-lysidine synthase [Legionella longbeachae D-4968]
 gi|289165400|ref|YP_003455538.1| cell cycle protein MesJ [Legionella longbeachae NSW150]
 gi|269988181|gb|EEZ94436.1| tRNA(Ile)-lysidine synthase [Legionella longbeachae D-4968]
 gi|288858573|emb|CBJ12454.1| cell cycle protein MesJ [Legionella longbeachae NSW150]
          Length = 460

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/401 (20%), Positives = 149/401 (37%), Gaps = 58/401 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ++V  SGG DS  LL AL +          K  A+ V+H +   A     +    C +L
Sbjct: 19  QLIVGFSGGLDSTVLLHALAA----HPILLDKIVAVHVNHGINANADFWQEHCKQFCQKL 74

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            ++    S +  +    +   AR ARY++ S   K  +   ++  H  DDQ ETV ++  
Sbjct: 75  GVSFRAQSVQFDR-SANIEEGARIARYSVFSALVKEQDC--LILGHHLDDQAETVLLQLF 131

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+          +     + RPFL   RE +  +     + W ED SN D  + 
Sbjct: 132 RGAGVDGLAAIPEFAQFGFGR---LFRPFLHYYREQLEHYAFLHQLDWVEDESNCDITYS 188

Query: 201 RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R  +R+ +  +       L   + +      +    +  L    L+V      ++ +  L
Sbjct: 189 RNYLRQEIIPLLKNKWPGLVGNIARTASHCQQAKRNLDALAISDLSVKGVKNKSVLKSTL 248

Query: 258 NID-----------------STLLFYLLR----------VSAAICGGQISLPGYRSMERV 290
           +I                  +TL    L+          +   +   Q+ LP   +  R+
Sbjct: 249 SIGLGMDINERELGENILTTNTLAIESLKSLNFDRIVNILRFWLKSNQVQLPSTITFHRL 308

Query: 291 M---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQN 346
           +   +F        VS G   + R  N L++ +  R NLP+ + + E            N
Sbjct: 309 IHEVIFSSQDAVPLVSWGNNSVRRYHNHLYLDKISRCNLPSDVEWTEFPV-------PLN 361

Query: 347 LSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGK 387
           + +S I++  Q   +  +       I Q A  S+  +EGG+
Sbjct: 362 IGNSEIRLMAQKSNQGLI-------IPQNASISIRFREGGE 395


>gi|262365357|gb|ACY61914.1| hypothetical protein YPD8_1229 [Yersinia pestis D182038]
          Length = 248

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 10/238 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L    H+LV  SGG DS  LL  L  +       ++   AI + H L   A   V++  
Sbjct: 18  QLGENRHVLVGFSGGLDSTVLLHLLVCLRQQL-IPELNIRAIHIHHGLNPQADSWVKHCM 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C + +I   VV       Q G+ AAAR ARY   S  A      +++TA   DDQ ET
Sbjct: 77  QQCDQWKIELKVVRVNIDPRQNGIEAAARTARYQAFS--ANLAAKEVLLTAQHLDDQCET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +  +R       GLS M   + +  +  + RP L   RE + ++   + + W ED SN
Sbjct: 135 FLLALKRGSGP--AGLSAMAAKMPFAHS-QLLRPLLAFSREILENYAQAQQLQWIEDDSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            DDRF+R  +R  V    L  L  +   F     +     A        +    + A+
Sbjct: 192 QDDRFDRNFLRLNV----LPILNQRWPHFAQATARSAGLCAEQEQLLDELLAEKLAAV 245


>gi|241758884|ref|ZP_04756997.1| tRNA(Ile)-lysidine synthase [Neisseria flavescens SK114]
 gi|241321092|gb|EER57305.1| tRNA(Ile)-lysidine synthase [Neisseria flavescens SK114]
          Length = 441

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 137/323 (42%), Gaps = 34/323 (10%)

Query: 19  PAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P+H +V   +SGG DS+ LL  LH     R F      A+ V H L   A    ++  D 
Sbjct: 21  PSHTVVEVGLSGGLDSVVLLHLLHR---TREFHHFDLRAVHVHHGLSTNADSWAKFCQDY 77

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C  L +   V      K   GL AAAR ARY   S+  K I    I+ AH  +DQ+ET  
Sbjct: 78  CRGLNVTLRVCRVNVEKQGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           + + R    +GM    +   +  ++ +W  RP L   R+++  +  Q  +S+ ED SN D
Sbjct: 134 LSAVRGGGLRGMAAMPVWRDLNEEIQIW--RPLLAFSRQELAEYAQQWGLSFVEDESNED 191

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQD--------LRVKVNNAVAMLIPKYLTVHMRS 248
             + R  +R       L     ++  F+         L+  +     ++  +Y  +    
Sbjct: 192 SSYLRNWMRNQ----ALPKWQQRIPNFEQQICTNVRLLQEDLQLLDELIESEYQRISPNG 247

Query: 249 IIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI- 304
           I +IS   Q    +   LL+Y LR          SLP Y S+      L++  +  +++ 
Sbjct: 248 IFSISLWRQCTPLLRRRLLWYFLRKQT------ESLPSYHSIADFARVLETADQAQLNLP 301

Query: 305 -GRVVIDRRANFLWITRAVRNLP 326
            G++V+ R   F+      + LP
Sbjct: 302 DGKLVVYRDKLFVCQESEFQKLP 324


>gi|257088703|ref|ZP_05583064.1| predicted protein [Enterococcus faecalis CH188]
 gi|256997515|gb|EEU84035.1| predicted protein [Enterococcus faecalis CH188]
          Length = 462

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ S A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKESPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 303 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 333


>gi|229546907|ref|ZP_04435632.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322]
 gi|293382701|ref|ZP_06628626.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712]
 gi|293388117|ref|ZP_06632644.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613]
 gi|307290191|ref|ZP_07570109.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411]
 gi|312908597|ref|ZP_07767539.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512]
 gi|312909255|ref|ZP_07768112.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516]
 gi|229307835|gb|EEN73822.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis TX1322]
 gi|291079861|gb|EFE17225.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis R712]
 gi|291082493|gb|EFE19456.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis S613]
 gi|306498747|gb|EFM68246.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0411]
 gi|310625384|gb|EFQ08667.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 512]
 gi|311290497|gb|EFQ69053.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DAPTO 516]
          Length = 497

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|255974763|ref|ZP_05425349.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2]
 gi|255967635|gb|EET98257.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T2]
          Length = 462

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 72/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    WK+ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWKDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI 304
            S+
Sbjct: 303 GSV 305


>gi|238019645|ref|ZP_04600071.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748]
 gi|237863686|gb|EEP64976.1| hypothetical protein VEIDISOL_01519 [Veillonella dispar ATCC 17748]
          Length = 332

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 130/304 (42%), Gaps = 24/304 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
               + ILVA SGG DSM LL  LH + + R     K     VDHC+R  +KDEV ++  
Sbjct: 20  FPENSRILVACSGGPDSMALLYLLHDIATHR-HTTYKIGVAIVDHCIRPESKDEVLWLQH 78

Query: 76  VCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               L +     ++       + +       R+ RY  ++E A++     I  AH  DDQ
Sbjct: 79  QVEELGLPFYSATFDVPSLSKEHKKSEETIGRQVRYQWLNEIAQSEGYDYISVAHHKDDQ 138

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E++     R     G  L+GM   +  D ++ + RP L   +E++ ++L  R +++C D
Sbjct: 139 AESILAHLIRGTGLNG--LTGMA-VVSNDYDIPVIRPLLDVPKEELLAYLADRKLTYCID 195

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP----------KY 241
            +N D R++R ++R  V    +  L        D   ++  +V+  +           K 
Sbjct: 196 STNDDIRYQRNKIRHRV----IPELESINPNVVDAIARLGGSVSEDLAVISDLTVQAFKR 251

Query: 242 LTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           L    +  + +S+  L  +   +   L +   +     I+L      E+++  + +G+  
Sbjct: 252 LVTIDKGEMRLSRRALRKEPLAIQRRLWQRLVSSIDSDITL-TTAHQEQLLDIVNTGEAK 310

Query: 301 CVSI 304
             +I
Sbjct: 311 TFTI 314


>gi|256855217|ref|ZP_05560578.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Enterococcus faecalis T8]
 gi|256709730|gb|EEU24777.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Enterococcus faecalis T8]
          Length = 500

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 54  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 110

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 111 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 170

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 171 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 227

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 228 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 283

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 284 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 340

Query: 302 VSI 304
            S+
Sbjct: 341 GSV 343


>gi|157372000|ref|YP_001479989.1| tRNA(Ile)-lysidine synthetase [Serratia proteamaculans 568]
 gi|189035972|sp|A8GIC1|TILS_SERP5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157323764|gb|ABV42861.1| tRNA(Ile)-lysidine synthetase [Serratia proteamaculans 568]
          Length = 436

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 121/302 (40%), Gaps = 18/302 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
             R L    H+LVA SGG DS  LL  L  +        ++  A+ V H L   A   V 
Sbjct: 10  LARQLGAHRHLLVAFSGGLDSSVLLHLLVGLRQQ--LPDLQLRAVHVHHGLSAFADQWVT 67

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +    C   ++   V   +    Q G+ AAAR ARY+  +          ++TA   DDQ
Sbjct: 68  HCRQQCVAWQLPLVVQHVQVDSQQGGIEAAARAARYSAFASTLAA--DETLLTAQHLDDQ 125

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET  +  +R     G+       ++    N  + RP L   R+ + ++  Q  +SW ED
Sbjct: 126 CETFLLALKRGSGPAGLSAMAAQTSL---GNNHLLRPLLGHSRQQLEAYAQQHQLSWIED 182

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            SN D RF+R  +R  V  + L+  +            +      L+ + L   + +++ 
Sbjct: 183 DSNQDPRFDRNFLRLQVLPL-LNQRWPHFAAATARSASLCAEQEQLLDELLAEQLHNLLD 241

Query: 252 ISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVS 303
             +      +L   +   F LLR   A+ G  +++P    ++R+       +      + 
Sbjct: 242 EDRALAIDGLLTCSAARRFALLRRWIALFG--VTMPSREQLQRLWEEVALSREDAEPQLQ 299

Query: 304 IG 305
           +G
Sbjct: 300 LG 301


>gi|117921240|ref|YP_870432.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. ANA-3]
 gi|117613572|gb|ABK49026.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. ANA-3]
          Length = 465

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 122/316 (38%), Gaps = 17/316 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + +++A SGG DS  L   L            +   I V H L   A     +   
Sbjct: 19  LQAGSKLVLAYSGGVDSEVLAYGLSEFAKHHPEFHYQL--IYVHHGLSPNADAWAEHCQT 76

Query: 76  VCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +   +  +V   + +  P+  + A AR+ RY  I +H K     +++TAH  DDQLET
Sbjct: 77  RAANYGLPITVERVQLTLGPRVSIEAEARKMRYQAILQHLKPQ--DVLLTAHHEDDQLET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPFLRCRREDIRSFLLQRNISWCEDP 192
           + +  +R    KG+   G    +           RP L   RE I +F   R +   ED 
Sbjct: 135 ILLALKRGQGPKGLAAMGQIQMLPLGEKGACLQVRPLLDISREQIEAFAQTRQLVHIEDE 194

Query: 193 SNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           SN DD+++R  +R  +         ++     +   L  +    V   + + L   +   
Sbjct: 195 SNQDDKYDRNFLRLEIIPRLKARWPSIATTASRSAQLCAEQQAVVDAEVSERLPKLLTEA 254

Query: 250 IAISQDILNIDSTLL----FYLLRVSAAICGGQISLPGYRSMERVMLF---LKSGKRGCV 302
               Q +L +D        +  L +   I      LP Y  +++++      K   +  +
Sbjct: 255 HFTQQTVLKLDELATQTSEWQGLLLRGFIESQGFGLPSYVQLQQILQQLMGAKEDAKVQL 314

Query: 303 SIGRVVIDRRANFLWI 318
            IG  V+ R A  L++
Sbjct: 315 QIGDCVLRRFAGMLYL 330


>gi|315028818|gb|EFT40750.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4000]
          Length = 497

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|257088026|ref|ZP_05582387.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6]
 gi|256996056|gb|EEU83358.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis D6]
          Length = 462

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 303 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 333


>gi|256618326|ref|ZP_05475172.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200]
 gi|256597853|gb|EEU17029.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ATCC 4200]
          Length = 462

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 136/331 (41%), Gaps = 31/331 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI---GRVVIDRRANFLWITRAVRNLPTLI 329
            S+    +  + +  ++L + +    L   +
Sbjct: 303 GSVMLEQQWQLAKSYDWLCLEQKQAALREEV 333


>gi|319654930|ref|ZP_08009004.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
 gi|317393355|gb|EFV74119.1| cell cycle protein MesJ [Bacillus sp. 2_A_57_CT2]
          Length = 462

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 79/333 (23%), Positives = 125/333 (37%), Gaps = 28/333 (8%)

Query: 7   ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  F++     +    I+V VSGG DS+ LL   H   + R   +I+  A  VDH  R
Sbjct: 4   EKVSAFLKKKGLDLNNKKIVVGVSGGPDSIALL---HYFWNQRQQLQIELIAAHVDHMFR 60

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            E +  +  +V D C +  I   +    V     K       AAR+ RY+     AK   
Sbjct: 61  GEESFQDAMFVKDYCRKKAIPFEMERANVPEYMEKSGKSSQTAARDCRYSFYQRTAKKYG 120

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I   H  DDQ+ET+ MR  R     G   +G+     +  + +I RPFL   R +I 
Sbjct: 121 AEYIALGHHGDDQVETILMRLTRGS--TGSARAGIPFKRPFG-DYFIIRPFLCLNRAEIE 177

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            + L+  ++   DPSN    + R R R+ V            + FQ     + +  A L 
Sbjct: 178 DYCLKERLNPRRDPSNEKGIYSRNRFRQEVLPFLRKENPQVHEHFQRFSEDLQSDEAYLQ 237

Query: 239 PKYLT-----VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM-----E 288
              +      +  +    IS DI +    +   L R    +    +      S+     E
Sbjct: 238 ELTVHKMNTVMKKKVNEEISMDI-DAFEAMPMPLQRRGIQLILNYLYKERPASLSASHIE 296

Query: 289 RVMLFLKSGK---RGCVSIGRVVIDRRANFLWI 318
            +   +KS           G  ++       ++
Sbjct: 297 SIFSLMKSPHPSGNLDFPGGLHIVRSYRQCHFL 329


>gi|125974740|ref|YP_001038650.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405]
 gi|256005249|ref|ZP_05430216.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360]
 gi|281418791|ref|ZP_06249810.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20]
 gi|125714965|gb|ABN53457.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum ATCC 27405]
 gi|255990800|gb|EEU00915.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 2360]
 gi|281407875|gb|EFB38134.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum JW20]
 gi|316941874|gb|ADU75908.1| tRNA(Ile)-lysidine synthetase [Clostridium thermocellum DSM 1313]
          Length = 470

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 128/341 (37%), Gaps = 35/341 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E+++ +   +     I+V VSGG DS+ LL  L  +      G     A+ V+H
Sbjct: 1   MIDKVLETIKKY-NMINNKDKIVVGVSGGPDSVCLLHILCKLRESMDLG---LVAVHVNH 56

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR + A  +  +V ++C +L +              + +  L    R  RY L  E A 
Sbjct: 57  MLRGDEASGDEAFVENLCKKLNVELVTRRIDIKKLAKERRLSLEETGRIERYRLFEEVAD 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  I  AH  +DQ ETV M   R     G  L GM           I RP L   R 
Sbjct: 117 NFGAQRIAVAHNKNDQAETVLMNIIRGTGLDG--LRGMDYIR-----GRIIRPLLGVERT 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVN 231
           +I ++    N++   D +N ++ + R ++R     ++  +    +   + K  DL   + 
Sbjct: 170 EIENYCRIHNLNPRIDSTNLENIYTRNKIRLDLIPYIEKLFNADIVNGISKMADL---IK 226

Query: 232 NAVAMLIPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPG 283
           + V+ +  +   ++ ++ I             +          ++R S     G I    
Sbjct: 227 DDVSFIESRTDEIYNKAKIKSDDKGVILDLNILKECHIAARKRIIRNSIKQIKGDIKGIA 286

Query: 284 YRSMERVMLFLKSGKRGCV----SIGRVVIDRRANFLWITR 320
              ++ +   +++GK G +       R V       + +  
Sbjct: 287 TVHIDSITDLIENGKTGSMLHLPHGVRAVKSYNTLKICLHE 327


>gi|260772239|ref|ZP_05881155.1| tRNA(Ile)-lysidine synthetase [Vibrio metschnikovii CIP 69.14]
 gi|260611378|gb|EEX36581.1| tRNA(Ile)-lysidine synthetase [Vibrio metschnikovii CIP 69.14]
          Length = 448

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 93/429 (21%), Positives = 161/429 (37%), Gaps = 38/429 (8%)

Query: 10  RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R F   L       +++A+SGG DS  LL  L      R    +   A+ V H L   A 
Sbjct: 5   RHFSHQLQAHDTKDLVLALSGGVDSRVLLHLLAQY---RDQYAVNVRAVHVHHGLSRNAD 61

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             V      C++  I+  V      +     +   AR+ARY +++++        ++  H
Sbjct: 62  HWVEQCRTWCNQSHISFDVEYVALERDSGESIEKLARDARYRVLAQYVNQQ--DTLLLGH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQLET  +  +R    KG+     C +        + RP L   R+ I  F     +
Sbjct: 120 HADDQLETFLLALKRGSGPKGLSAMAACASFS---QGQLLRPLLAVTRQQIEQFAQCHQL 176

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           S   D SN D R++R  +R  V  I      +    +++  +L  +    +  L+ + L 
Sbjct: 177 SSVNDESNADLRYDRNFLRHQVAPILIQRWPSFRQAVQRSAELCAEQETLIEELLAEKLA 236

Query: 244 VHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
             + S  A+S Q +      +   L+R  A +   Q  LP  +  E +       ++G  
Sbjct: 237 NMINSDGALSIQGLKECSDAMRRQLIR--AWLAKQQRVLPSRQHTEMIWSQVALAEAGAN 294

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPT---LILYPEETTVWDGRYQFQNLSDSLIQIGP 356
             + +    I R  + L+   +V ++      I       + D   +     D    I  
Sbjct: 295 PILHLKAYDIRRFNDLLFCVTSVADISEWRQKIRLDTPLVLPDQLGKLTLSLDPQGNIRL 354

Query: 357 QSYRKAD----VPSGIPPIIAQRALS----------SMPSKEGGK-PLLAPFSRFMTKFD 401
             +++A      P+G+      RA S          ++PS +  + P+L    R +   D
Sbjct: 355 PVHQEALRVTFDPTGLSACPVGRAGSRKLKKLFQEYAIPSWQRRRMPILLEHDRVIAIAD 414

Query: 402 LPVAYAFSI 410
           L V   FS 
Sbjct: 415 LFVDRDFSG 423


>gi|329955642|ref|ZP_08296550.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056]
 gi|328526045|gb|EGF53069.1| tRNA(Ile)-lysidine synthetase [Bacteroides clarus YIT 12056]
          Length = 423

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 135/359 (37%), Gaps = 55/359 (15%)

Query: 7   ESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  ++  +    PA  ILVA+SGG+DS+ LL  L ++         +  A   +  LR
Sbjct: 4   ERVARYISQKKFFMPADKILVALSGGADSVALLCLLQTL-------GYECEAAHCNFHLR 56

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
            E +  +  +V  +C++ ++   +V +       +    +  AARE RY    +     N
Sbjct: 57  GEESDRDETFVRQLCAKRQVPLHIVHFDTLRTAEERHISIEMAARELRYEWFEKIRTKSN 116

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A +I  AH  DD +ET+ +   R     G+         +   N  I RP L   R +I 
Sbjct: 117 ANVIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPKNGHIVRPLLCLDRNEII 169

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVN 231
           ++L +    +  D +N  D + R ++R       + +      ++    +   +      
Sbjct: 170 NYLNRIGQDYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILNTAEHLNEASAIYK 229

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR--SMER 289
             +   I +  T     I A+  +      TLLF +L              G+    +E 
Sbjct: 230 KGIEEGIQRVRTAKGIHIGALMHEP--APKTLLFEIL-----------YPLGFNATQVED 276

Query: 290 VMLFL--KSGKRGCVSIGRVVIDRRANFL---------WITRAVRNLPTLILYPEETTV 337
           +   L  + GK       RVV DR    +          +T   R L    + P + TV
Sbjct: 277 ICRALEGQPGKVFTSGHWRVVKDREYLLIETCQQATQPTLTMEERILTPDFIIPRDKTV 335


>gi|305667064|ref|YP_003863351.1| putative cell-cycle protein [Maribacter sp. HTCC2170]
 gi|88707995|gb|EAR00233.1| putative cell-cycle protein [Maribacter sp. HTCC2170]
          Length = 434

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 127/322 (39%), Gaps = 27/322 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   IE    F   L   +  L+A SGG DS+ L      +        + FS    +  
Sbjct: 5   FREHIE--NHFPELLQ--SRFLLACSGGLDSVVLAHLCSEL-------GLDFSLAHCNFK 53

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR+  +  + R+V ++   L++   V+ +      ++    +  AAR+ RY       K 
Sbjct: 54  LRDIESDKDERFVKELAEILKVPCFVICFDTLEYANEQGVSIQMAARKMRYEWFKSLKKQ 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   ++TAH  DD +ET  +   R    KG+       T +      ISRP L   R  
Sbjct: 114 HSIKTLVTAHHADDNIETFLINLSRGTGIKGL-------TGIPSKTNEISRPLLAFSRLQ 166

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I  +  Q NI W ED SN + ++ R ++R  +    L  L+        +  K     + 
Sbjct: 167 IMEYAKQSNIEWREDQSNKETKYLRNKIRHEIVPR-LKELHPTFSNNFRITQKYLRQASD 225

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFL 294
           +   +L      +  I  +++ I    L  +L+   A   G  +  G+   E  +++L  
Sbjct: 226 ISDGHLNQVKAKLFTIEGELIRIPIEPLK-VLKPLDAYLYGLFNEYGFTEWEDVKLLLNA 284

Query: 295 KSGKRGCVSIGRVVIDRRANFL 316
            SGK       R+V DR    L
Sbjct: 285 MSGKTIYSKTHRLVKDRDELLL 306


>gi|315172637|gb|EFU16654.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1346]
          Length = 497

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|315274600|ref|ZP_07869470.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120]
 gi|313615770|gb|EFR89028.1| bifunctional protein TilS/hprT [Listeria marthii FSL S4-120]
          Length = 648

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L      +   K   S   ++H LRE A  E + V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WESKLIPKEAISVAHLNHHLRENAAKEQQLVEIFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +  +          K     Q G+   AR  RY    +     N   ++ AH  DDQ+E
Sbjct: 77  KQHNLPFYTEEVDVKKQAQVLQKGIEETARIVRYDFFEKIMAEQNINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  +   +G SG+           I RPFL   + +I  +  + ++++  D S
Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKREVKGGYAI-RPFLPITKAEIIEYAHKHSLAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYAHFERFSEETSEDFGYLEELASDLLQKNLLKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +     N  + L    + +  
Sbjct: 254 KKTTLLLSSFKNEANPLQRRAIHLLL 279


>gi|256956808|ref|ZP_05560979.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5]
 gi|257078478|ref|ZP_05572839.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus
           faecalis JH1]
 gi|294779311|ref|ZP_06744714.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1]
 gi|256947304|gb|EEU63936.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis DS5]
 gi|256986508|gb|EEU73810.1| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus
           faecalis JH1]
 gi|294453597|gb|EFG21996.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis PC1.1]
          Length = 462

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETLAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI 304
            S+
Sbjct: 303 GSV 305


>gi|315147115|gb|EFT91131.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX4244]
          Length = 497

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|307286958|ref|ZP_07567033.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109]
 gi|306501904|gb|EFM71193.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0109]
 gi|315165845|gb|EFU09862.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX1302]
          Length = 497

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|145300032|ref|YP_001142873.1| tRNA(Ile)-lysidine synthase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852804|gb|ABO91125.1| tRNA(Ile)-lysidine synthase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 456

 Score =  220 bits (561), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 155/419 (36%), Gaps = 45/419 (10%)

Query: 11  FFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            F ++L  P     +LVA SGG DS  LL        +     +   A+ V H L   A 
Sbjct: 8   RFCQTLPEPEGSRGLLVAFSGGLDSTVLLALAAQFAREHG---LALRALHVHHGLSPHAD 64

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAH 126
           + V +   VC +L +   V   +  +     L A AR+ARY  ++  A+      ++TAH
Sbjct: 65  EWVAHCEAVCQQLAVPLMVERVQLLRGNGESLEAQARDARYQRLA--ARQEKGEWLLTAH 122

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQLET+ +  +R    +G  L+G+  +  +   L + RP L   R ++         
Sbjct: 123 HQDDQLETLLLALKRGAGLRG--LAGILPSQPFAGGL-LLRPLLEFSRAELAEVAATLPF 179

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY----- 241
            W ED SN D  ++R  +R+ +    L A +  M +     + +      L+ +      
Sbjct: 180 GWVEDESNQDVSYDRNFLRQQLIP-QLKARWPAMARTAARSMALCAEQEALLEELAEEDW 238

Query: 242 ------LTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
                   +H+ S+ A S  I   L +  T    LLR      GG+  +P    +  +  
Sbjct: 239 QLACGGEALHVSSLPASSLQIVPLLTLSPTRRNNLLRYWIRRLGGE--MPSRDQLALLWQ 296

Query: 293 ---FLKSGKRGCVSIGRVVIDRRANFLWITRAV---RNLPTLILYPEETTVWD--GRYQF 344
                +       S+  +   R    L + R     R+    +   E   + D  GR Q 
Sbjct: 297 EVALAREDANPQFSLKNLDCRRFQGRLHLVRPGLTPRHEQLAVTIGESVVLPDGLGRVQV 356

Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
               D      P       V   + P +  +     P    G      F + + ++ +P
Sbjct: 357 SARPDGEGLRLPGMGEPLSVRFQVTPGVMLK-----PVGRSGSRR---FKKLLQEYGVP 407


>gi|307274227|ref|ZP_07555435.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855]
 gi|306509189|gb|EFM78251.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0855]
          Length = 497

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|256960614|ref|ZP_05564785.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96]
 gi|257417629|ref|ZP_05594623.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis AR01/DG]
 gi|256951110|gb|EEU67742.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Merz96]
 gi|257159457|gb|EEU89417.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis ARO1/DG]
          Length = 462

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI 304
            S+
Sbjct: 303 GSV 305


>gi|149926802|ref|ZP_01915061.1| transcriptional regulator, GntR family protein [Limnobacter sp.
           MED105]
 gi|149824354|gb|EDM83572.1| transcriptional regulator, GntR family protein [Limnobacter sp.
           MED105]
          Length = 330

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 73/324 (22%), Positives = 114/324 (35%), Gaps = 15/324 (4%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S    +  F R    PA  +VA SGG DS  LL ALH +        +   A+ V+H
Sbjct: 1   MKRSLETFLSDFNRHAPTPACFVVAYSGGVDSTVLLHALHVM-------GLPLHAVHVNH 53

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            ++  A     +    C +  +  + +  K     +GL   AR  RY  I    K     
Sbjct: 54  QIQTQADAWEAHCKSQCEQWGVPFTALRVKVEPSDSGLEGQARVERYRAIFNWMKANQHH 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRRED 176
           +++ AH  DDQLETV ++  R    +G+G       +  D +L     + RP L C +  
Sbjct: 114 VLLCAHHRDDQLETVLLQLLRGSGLRGVGGMRAVGPVGVDRHLHPELLLCRPLLNCSKPS 173

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +  +  +  +   EDPSN D    R  VR  +            K    L        + 
Sbjct: 174 LLDYARENRLQHIEDPSNHDTALRRNWVRHELLPSLEEHFPQSPKALLQLAEFFQAHYSA 233

Query: 237 LIPKYLTVHMRSIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
                  +  + I             +D +     LR      G +        + R + 
Sbjct: 234 EDSDTQAMAPQVISDTGGLQLIQWRVMDDSAQLNSLRHWLLSQGVRCGKLKLIELARQLR 293

Query: 293 FLKSGKRGCVSIGRVVIDRRANFL 316
             K G R      +V + R+   L
Sbjct: 294 INKGGIREVKKGWQVKVSRQQAHL 317


>gi|315156267|gb|EFU00284.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0043]
 gi|315158588|gb|EFU02605.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0312]
          Length = 497

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|295087951|emb|CBK69474.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Bacteroides xylanisolvens
           XB1A]
          Length = 426

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 137/392 (34%), Gaps = 65/392 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE    F       A +L+A+SGG+DS+ LL  LH+             A   +  LR E
Sbjct: 10  IEKEHLFS----LDAKVLIALSGGADSVALLCILHT-------AGYHCEAAHCNFHLRGE 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C R  I    + +       + Q  +  AARE RY    +  K   A 
Sbjct: 59  ESDRDELFVRQLCKRTGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQAD 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET+ +   R     G+         +   N  I RP L   REDI  +
Sbjct: 119 VIAVAHHQDDSVETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNREDIIHY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L      +  D +N +D + R ++R  +  +         K   D    +N+   +    
Sbjct: 172 LESIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKKNLIDTSNYLNDVATIYNKC 231

Query: 241 YLTVHMR----SIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSME----RVM 291
                        I IS+ +       +LF +L              G+ S +       
Sbjct: 232 IEETKNNIVTTEGIRISELVKEPAPEAILFEIL-----------HPLGFNSAQIKDIAFS 280

Query: 292 LFLKSGKRGCVSIGRVVIDRR---------ANFLW----ITRAVRNLPTLILYPEETTVW 338
           L  + GK+ C    RV+ DR           N +     I +  +      L P +  + 
Sbjct: 281 LHSQPGKQFCSKKWRVIKDREFLLIEAIESGNEILLPFQIIKEEKEYTPDFLIPRDKGIA 340

Query: 339 ---------DGRYQFQNLSDSLIQIGPQSYRK 361
                    D  Y+     D+ I  G +  +K
Sbjct: 341 CFDADKLNGDIHYRKWQTGDTFIPFGMKGKKK 372


>gi|28209970|ref|NP_780914.1| cell cycle protein mesJ [Clostridium tetani E88]
 gi|61216641|sp|Q899H5|TILS_CLOTE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28202405|gb|AAO34851.1| cell cycle protein mesJ [Clostridium tetani E88]
          Length = 467

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 114/321 (35%), Gaps = 23/321 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76
               I+V VSGG DSM LL  L+ +   R    +   A  ++HCLR   A ++ +YV + 
Sbjct: 17  KGDKIIVGVSGGPDSMCLLHILYRL---RDEYNLNIIAAHINHCLRGKDADNDEKYVENF 73

Query: 77  CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C +  I              K       A RE RY   ++     N   I  AH  +DQ 
Sbjct: 74  CKKYDIDFYSTKIDVGKLAKKENISFEVAGRECRYDFFNKLKLKFNCDKIALAHNSNDQC 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ MR  R     G G+ G+        N++I RP +   R+ I  +  +  +    D 
Sbjct: 134 ETILMRIMR-----GTGIEGLAGIKAIRDNIYI-RPIIEASRKQIEDYCEEHELEARIDK 187

Query: 193 SNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPK---YLTVH 245
           +N +  + R +VR  +           +   + +  +        +     K        
Sbjct: 188 TNLESIYARNKVRLELIPYIQENFNQDIIAVINRMGNNIDVDREYLDFASDKKFYQFCTS 247

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
            +  + I ++       +   ++R S     G +       +E ++   K      +++ 
Sbjct: 248 TKYEVVIKKEAFLEHKAITSRIIRRSINRLKGNLYNFERVHVEDILNLQKGSTGKFITLP 307

Query: 306 RVV--IDRRANFLWITRAVRN 324
             +  ++   +         +
Sbjct: 308 EKIKALNNYGDIHIFFEEFSD 328


>gi|117617562|ref|YP_855748.1| tRNA(Ile)-lysidine synthetase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117558969|gb|ABK35917.1| tRNA(Ile)-lysidine synthetase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 446

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 152/410 (37%), Gaps = 37/410 (9%)

Query: 11  FFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            F ++L  P     +LVA SGG DS  LL+       ++    +   A+ V H L   A 
Sbjct: 8   RFCQTLPAPEGSRGLLVAFSGGLDSTVLLVLAAQFAREQG---LVLRALHVHHGLSPNAD 64

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAH 126
           + V +   VC +L +   V   +  +     L A AREARY  +   A+      ++TAH
Sbjct: 65  EWVAHCETVCQQLAVPLLVERVQLQRDSGDSLEAQAREARY--LCLAAQLGEGEWLLTAH 122

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQLET+ +  +R    +G  L+GM  +  +   L + RP L   R ++         
Sbjct: 123 HQDDQLETLLLALKRGAGLRG--LAGMVPSQPFAGGL-LLRPLLEVSRTELADAAASLPY 179

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
            W ED SN D+ ++R  +R+ +         A+     +   L  +    +  L      
Sbjct: 180 GWVEDESNQDESYDRNFLRQRLIPQLKARWPAMAQTAARSMALCAEQEALLEELAEADWR 239

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRG 300
           +           +L +  T    LLR      GG+  +P    +  +       +     
Sbjct: 240 LAAAGEALQIAPLLALSGTRRNNLLRYWIRRQGGE--MPSREQLGLLWQEVALAREDANP 297

Query: 301 CVSIGRVVIDRRANFLWITRAVRNL--PTLILYPEETT-VWDGRYQFQNLSDSLIQIGPQ 357
            ++ G     R    L + R         L L   ET  + DG  + + L     +    
Sbjct: 298 QLNWGGQSCRRFQGRLHLVRPGLQPRYEQLTLAVGETLSLPDGLGEVRLLPRVEGE---- 353

Query: 358 SYRKADVPSGIPPIIAQRALSS----MPSKEGGKPLLAPFSRFMTKFDLP 403
                 +P    P+  +  +++     P   GG   L    + + ++ +P
Sbjct: 354 ---GLRLPRADEPLSVRFGVAAGSMLKPVGRGGSRRL---KKLLQEYGVP 397


>gi|15896451|ref|NP_349800.1| cell cycle protein MesJ-like protein [Clostridium acetobutylicum
           ATCC 824]
 gi|61216713|sp|Q97EB0|TILS_CLOAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15026275|gb|AAK81140.1|AE007816_4 Cell cycle protein MesJ ortholog, ATPase of the PP-loop superamily
           [Clostridium acetobutylicum ATCC 824]
 gi|325510609|gb|ADZ22245.1| ATPase of the PP-loop superamily [Clostridium acetobutylicum EA
           2018]
          Length = 461

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 21/297 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78
             I+VAVSGG DS+ LL  L  +   +        A  V+HC+R  A D +  YV   C 
Sbjct: 19  DRIVVAVSGGPDSICLLHILFKL---KDKFNTSICAAHVNHCIRGEAADKDEEYVKKFCE 75

Query: 79  RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +L I   V     +K     +     A RE RYA   E  +   A  I  AH  +DQ ET
Sbjct: 76  KLDIQFYVKRVDVNKIAHEKKISSEMAGREIRYAFFEEVKERFKANKIAIAHNANDQAET 135

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + MR  R    +G  + G+        + +  RP +  RR  I  +     +    D +N
Sbjct: 136 IMMRIIRGTGTEG--IKGIRPVR----DGYYIRPLIEIRRSSIEKYCEDEKLMPRIDATN 189

Query: 195 TDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI- 249
            +  + R ++R  +    +      +   + +  +L    N+ +  L      ++     
Sbjct: 190 LERDYNRNKIRLDLIPYIVKNFNEDIVGALNRLGELVTIDNDYLEKLAKSKYKLYCNECE 249

Query: 250 --IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
             + IS++  + D+ +L  ++R +             + ++ ++   K+     +++
Sbjct: 250 KQVIISKEAFSNDTAILSRIIRRAVFYLVNSKYNLEKKHIDSIIGCQKNTTGKQINL 306


>gi|88798276|ref|ZP_01113862.1| cell cycle protein MesJ [Reinekea sp. MED297]
 gi|88779052|gb|EAR10241.1| cell cycle protein MesJ [Reinekea sp. MED297]
          Length = 439

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 85/354 (24%), Positives = 135/354 (38%), Gaps = 38/354 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFL     +R   R+   P  + V  SGG DS+ LL           +G  + +AI V+H
Sbjct: 11  MFLDLQRELR---RNFQPP--VYVGYSGGVDSILLLSLACQA-----YGADQVTAIHVNH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            + E A     +      +L  +  V + +      G+ + AR+ RY   +         
Sbjct: 61  QVSEFATQWQEHCVAQAEQLGCSCIVRTVEVGNRGQGIESDARDRRYDAFANVMPEGG-- 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++  H  DDQ+ET ++R  R   + G  L GM      D    I RP L   R+DI   
Sbjct: 119 TLLLGHHLDDQIETFFLRLLRGAGQHG--LQGMVQESNRD-GYRIIRPLLTTSRQDIELM 175

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA----- 235
                + W +D SN D RF+R  +R  V    L  +  +   ++   ++    +A     
Sbjct: 176 AQHHGLRWIDDESNEDTRFDRNFLRHEV----LPKIESRWPGYRQRILQTQQLIAGTETS 231

Query: 236 ----MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
                    +   H + +  +  D L+ D  L   LL       G ++  P    +E V+
Sbjct: 232 SVDMSEALAHRLSHDQGLKMVQLDELSRDQIL--SLLHQWLTTVGQKV--PSKARLEVVL 287

Query: 292 L---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETTVWDG 340
                 +   R  V IG   I R    L+   A   LP    ++  +E  VW G
Sbjct: 288 DEVVHARQDARPSVRIGEGTIQRHGPALY-WVADSPLPSQAPLVQMDEALVWPG 340


>gi|304409578|ref|ZP_07391198.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS183]
 gi|307303936|ref|ZP_07583689.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica BA175]
 gi|304352096|gb|EFM16494.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica OS183]
 gi|306912834|gb|EFN43257.1| tRNA(Ile)-lysidine synthetase [Shewanella baltica BA175]
          Length = 486

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 70/334 (20%), Positives = 133/334 (39%), Gaps = 34/334 (10%)

Query: 7   ESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E +  F+  +SL     +++A SGG DS  L   L      R   +  +  + V H L +
Sbjct: 16  EHISAFLTAQSLAPRCKLVLAYSGGVDSEVLAFGLSQFA--RQHPEFSYQLVYVHHGLSD 73

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIM 123
            A+   ++  +      +  +V     ++ P+  L A AR+ RY  I  H       +++
Sbjct: 74  NAEVWAQHCLERGQHYGLPVTVERVTVNRGPRLSLEAEARKVRYQAIERHLSAN--DVLL 131

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DDQLET+ +  +R    KG+   G    +     L   RP L   RE I ++  Q
Sbjct: 132 TAHHEDDQLETILLALKRGQGPKGLAAMGQVQVLAQGRQL---RPLLDISREQIEAYAKQ 188

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           + +   ED SN DD+++R  +R       L  +     ++  +    + + A+   +  T
Sbjct: 189 QGLVHIEDESNQDDKYDRNFLR-------LEIIPRLKARWPSIATTASRSAALCAEQQAT 241

Query: 244 VHMRSIIAISQDILNIDSTLL--------------FYLLRVSAAICGGQISLPGYRSMER 289
           + ++    +   +                      +  L +   I     +LP    + +
Sbjct: 242 LDVQVSERLPLWLTQAPYHTQSVFKLDGFAEQSADWQALLLRGFIESQGFALPSKVQLNQ 301

Query: 290 V---MLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
           +   +L  K   +  + +G   I R AN +++ +
Sbjct: 302 IITQLLTAKDDAKVHIRVGECEICRFANQVYLFK 335


>gi|298484345|ref|ZP_07002506.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22]
 gi|298269499|gb|EFI11099.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D22]
          Length = 426

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 136/392 (34%), Gaps = 65/392 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE    F       A +L+A+SGG+DS+ LL  LH+             A   +  LR E
Sbjct: 10  IEKEHLFS----LDAKVLIALSGGADSVALLCILHT-------AGYHCEAAHCNFHLRGE 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C R  I    + +       + Q  +  AARE RY    +  K   A 
Sbjct: 59  ESDRDELFVRQLCKRTGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQAD 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET+ +   R     G+         +   N  I RP L   REDI  +
Sbjct: 119 VIAVAHHQDDSVETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNREDIIHY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L      +  D +N +D + R ++R  +  +         K   D    +N+   +    
Sbjct: 172 LESIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSIKKNLIDTSNYLNDVATIYNKC 231

Query: 241 YLTVHMR----SIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSME----RVM 291
                        I IS  +       +LF +L              G+ S +       
Sbjct: 232 IEETKNNIVTTEGIRISDLVKEPAPEAILFEIL-----------HPLGFNSAQIKDIAFS 280

Query: 292 LFLKSGKRGCVSIGRVVIDRR---------ANFLW----ITRAVRNLPTLILYPEETTVW 338
           L  + GK+ C    RV+ DR           N +     I +  +      L P +  + 
Sbjct: 281 LHSQPGKQFCSKKWRVIKDREFLLIEAIESGNEILPPFQIIKEEKEYTPDFLIPRDKGIA 340

Query: 339 ---------DGRYQFQNLSDSLIQIGPQSYRK 361
                    D  Y+     D+ I  G +  +K
Sbjct: 341 CFDADKLNGDIHYRKWQTGDTFIPFGMKGKKK 372


>gi|237712941|ref|ZP_04543422.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409616|ref|ZP_06086156.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643471|ref|ZP_06721284.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a]
 gi|294807915|ref|ZP_06766696.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b]
 gi|229447060|gb|EEO52851.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352469|gb|EEZ01569.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641190|gb|EFF59395.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CC 2a]
 gi|294444913|gb|EFG13599.1| tRNA(Ile)-lysidine synthetase [Bacteroides xylanisolvens SD CC 1b]
          Length = 426

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 137/392 (34%), Gaps = 65/392 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE    F       A +L+A+SGG+DS+ LL  LH+             A   +  LR E
Sbjct: 10  IEKEHLFS----LDAKVLIALSGGADSVALLCILHT-------AGYHCEAAHCNFHLRGE 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C R  I    + +       + Q  +  AARE RY    +  K   A 
Sbjct: 59  ESDRDELFVRQLCKRTGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQAD 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET+ +   R     G+         +   N  I RP L   REDI  +
Sbjct: 119 VIAVAHHQDDSVETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNREDIIHY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L      +  D +N +D + R ++R  +  +         K   D    +N+   +    
Sbjct: 172 LESIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKKNLIDTSNYLNDVATIYNKC 231

Query: 241 YLTVHMR----SIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSME----RVM 291
                        I IS  +       +LF +L              G+ S +       
Sbjct: 232 IEETKNNIVTTEGIRISDLVKEPAPEAILFEIL-----------HPLGFNSAQIKDIAFS 280

Query: 292 LFLKSGKRGCVSIGRVVIDRR---------ANFLW----ITRAVRNLPTLILYPEETTVW 338
           L  + GK+ C    RV+ DR+          N +     I +  +      L P +  + 
Sbjct: 281 LHSQPGKQFCSKKWRVIKDRKFLLIEAIESGNEILPPFQIIKEEKEYTPDFLIPRDKGIA 340

Query: 339 ---------DGRYQFQNLSDSLIQIGPQSYRK 361
                    D  Y+     D+ I  G +  +K
Sbjct: 341 CFDADKLNGDIHYRKWQTGDTFIPFGMKGKKK 372


>gi|229550496|ref|ZP_04439221.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC
           29200]
 gi|229304353|gb|EEN70349.1| possible tRNA(Ile)-lysidine synthase [Enterococcus faecalis ATCC
           29200]
          Length = 497

 Score =  220 bits (560), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|312952663|ref|ZP_07771527.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102]
 gi|310629451|gb|EFQ12734.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0102]
 gi|315153553|gb|EFT97569.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0031]
          Length = 497

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYDFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|255657510|ref|ZP_05402919.1| putative ATPase [Clostridium difficile QCD-23m63]
 gi|296452818|ref|ZP_06894505.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Clostridium difficile NAP08]
 gi|296879930|ref|ZP_06903902.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07]
 gi|296258366|gb|EFH05274.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Clostridium difficile NAP08]
 gi|296429044|gb|EFH14919.1| tRNA(Ile)-lysidine synthase [Clostridium difficile NAP07]
          Length = 462

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 127/322 (39%), Gaps = 25/322 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
           +     I++ +SGG DS+ LL  L+ +  D     I+  A  ++H +R   A+ +  YVS
Sbjct: 16  IQKGDKIVLGLSGGPDSVCLLHVLNRLKKD---FNIEIYAAHLNHQIRGIEAQKDALYVS 72

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +C  + I   V S    K        L   AR+ RY +  E    I A  I   H  +D
Sbjct: 73  KLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLND 132

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV MR  R    KG+        I Y  +  I RP L   R +I  +    N++   
Sbjct: 133 QAETVMMRIMRGTGLKGL------KGIDYIRDNCIIRPILDVERSEIEEYCEAYNLNPRI 186

Query: 191 DPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           D +N ++ + R ++R  +            + ++       +     +         +  
Sbjct: 187 DKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVS 246

Query: 243 TVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RG 300
            +  +  + I+  D + +   +   +LR S     G  +    R +E +M    + K   
Sbjct: 247 NIKEKGFVEINLDDFVCLHDAIKVRVLRNSIKHILGDTNFVDQRHIEDIMSLEDNSKVNK 306

Query: 301 CVSIGRVV-IDRRANFLWITRA 321
            +++ R + + R+ + + +T  
Sbjct: 307 MLTLPRNIFVYRKKDSIILTNE 328


>gi|83588977|ref|YP_428986.1| tRNA(Ile)-lysidine synthetase-like [Moorella thermoacetica ATCC
           39073]
 gi|83571891|gb|ABC18443.1| tRNA(Ile)-lysidine synthetase-like protein [Moorella thermoacetica
           ATCC 39073]
          Length = 455

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 127/330 (38%), Gaps = 32/330 (9%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR  ++    LV    ++V VSGG DS+ LL +L ++  +  +         ++H L
Sbjct: 2   LDRVRQTIQDYHLLVPGDKVVVGVSGGPDSLALLHSLMTLQEEYGY---TLQVAHLNHGL 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           R  A  +  YV D+ +   +  +V    V     +    + AAARE RY    E A  + 
Sbjct: 59  RPEAAADAEYVRDLATGWGLPVTVAQRDVLAYRQEHHLSIEAAAREVRYNFFQEVAAAVG 118

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  +DQ ETV +   R     G+         +      + RP L   R +I 
Sbjct: 119 ATRIAVGHQAEDQAETVLLNLLRGSGLTGL-------KAMLPRRGRLIRPLLFVTRAEIE 171

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           ++     +    D +N D  + R ++R  +  +        +         +      L+
Sbjct: 172 AYCRDNGLHPRRDFTNEDPAYRRNKIRHQLLPLLAREYNPAIVATLGRTALILQEDEALL 231

Query: 239 PKYLTVHMRSIIA---------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
                  +  II            Q   ++   L   +LR++AA  G ++    +  +E+
Sbjct: 232 ADLAHRALEGIIKRREGETLVLDRQGWQDLAPALQRRVLRLAAATLGRRV---SFNQVEK 288

Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWI 318
                + G  G ++  GR+ I  R   L +
Sbjct: 289 ARAVAREG--GTLTWPGRLSIRARGAELHL 316


>gi|257084199|ref|ZP_05578560.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1]
 gi|256992229|gb|EEU79531.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis Fly1]
          Length = 462

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI 304
            S+
Sbjct: 303 GSV 305


>gi|323491002|ref|ZP_08096196.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2]
 gi|323395358|gb|EGA88210.1| tRNA(Ile)-lysidine synthase [Planococcus donghaensis MPA1U2]
          Length = 463

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 131/345 (37%), Gaps = 25/345 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     +LV  SGG DSM LL  L+S+ +D     I  +A+ VDH LR E +  +  +  
Sbjct: 18  LQTGDKVLVGCSGGIDSMVLLYFLNSIKADLG---ISVAAVHVDHMLRGEESDKDRLFTE 74

Query: 75  DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +  +  I        +     K         R  RY    E  K   AT   TAH  DD
Sbjct: 75  KIAKQWGIECFSRAIPIPAILEKRGGNKQQVCRTERYNYFLEVMKQTGATKFATAHHADD 134

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           QLET+ M   R   + G    GM  +  +  N  + RP L   +E I ++    NI + E
Sbjct: 135 QLETILMSGVRGSLQDGSF--GMLASRPFG-NGQLIRPLLAVVKEQISAYAKSLNIPYRE 191

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           D SN +  + R R+R+ V  +                +  Q  +  +       + + + 
Sbjct: 192 DSSNAEAAYTRNRLRQNVLPLLKEENSKVSQNFVELAEDMQQDQQFLQELAQQKLQQLIR 251

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +    +   ++        L   ++ +          +P  R +   M  +     G V 
Sbjct: 252 IESGKVFLSAKSFRVEAHALQKRMVLLLLNYLYNPKQVPLTRQLVEQMQEMMQSSSGTVF 311

Query: 304 IG---RVVIDRRANFLWITR----AVRNLPTLILYPEETTVWDGR 341
           +      +  R+ + + + R    AV  L T+ +  + T ++DGR
Sbjct: 312 LHLPQHYIAIRQYDTVLLGRQSQEAVAELTTINITADWTPIFDGR 356


>gi|311694162|gb|ADP97035.1| cell cycle protein MesJ [marine bacterium HP15]
          Length = 449

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 129/344 (37%), Gaps = 23/344 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++   VR L     + VA+SGG DS  LL                  AI ++H L+  A
Sbjct: 15  EALCAPVRELPDHTRLWVALSGGLDSTLLLHLAAHCHGCSGA----VRAIHINHQLQPNA 70

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIM 123
            D   +    C RL +   V        ++   G+  AAR+ARYA +          L++
Sbjct: 71  SDTESFCRGECERLGVPLVVERVTVDGGRSSGAGIEEAARKARYAALEALVGK--GDLVL 128

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  DDQ ETV  R  R       GL+GM  +        + RP L   R ++  +   
Sbjct: 129 MAHHGDDQAETVLFRMLRGSGV--AGLAGMPASRELGT-ATLVRPLLGFERAELERWARV 185

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR------VKVNNAVAML 237
             +SW +DPSNTD RF+R  +R  V  +         ++ +           +N  +A L
Sbjct: 186 AGLSWVDDPSNTDQRFDRNFLRHTVLPLLRDRWPGLNRRLRHTAESCGESEALNRKLAAL 245

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG-YRSMERVMLFLKS 296
             + +      +      +  +       L+R  A   G     PG ++ + R +LF   
Sbjct: 246 QWQAIGGDRDRL--PVDGLKTLPLAEQKNLVRWWARERGFHAPTPGDWQQVIRDLLFAAE 303

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLP--TLILYPEETTVW 338
            +          + R    L +      LP   + L P E   W
Sbjct: 304 DREPEFRSDGFSLRRFQGDLCLVPDRGPLPDAPVDLEPGEGVAW 347


>gi|257081551|ref|ZP_05575912.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol]
 gi|256989581|gb|EEU76883.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis E1Sol]
          Length = 462

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V+      +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVVEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI 304
            S+
Sbjct: 303 GSV 305


>gi|15612646|ref|NP_240949.1| cell-cycle protein [Bacillus halodurans C-125]
 gi|61216744|sp|Q9KGH8|TILS_BACHD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|10172695|dbj|BAB03802.1| cell-cycle protein [Bacillus halodurans C-125]
          Length = 462

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 146/376 (38%), Gaps = 33/376 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+ IE  R F    +    ++VAVSGG DSM LL  L    S R    I   A   +H L
Sbjct: 6   LNFIEEHRLFASGGL----VIVAVSGGPDSMALLHFL---FSHREQLGITVMAAHGNHQL 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           R+ A +E  +V   C    I  +     V  +      G+   ARE RY  +   AK   
Sbjct: 59  RQEADEEETFVHQFCLSHGILFTSARLPVKERMEMSGEGVQVTARELRYKWLEAEAKKHG 118

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I T H  DDQ+ET+ M+  R       G   +   +    ++ I RPFL   +  I 
Sbjct: 119 AAFIATGHHGDDQIETILMKQVRGTFPLSRGGIPVRREV---GDVLIVRPFLGITKGQIE 175

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKF-QDLRVKVN 231
            +  + NI    DPSN    + R R R  +       + + H  + ++ ++ ++    + 
Sbjct: 176 HYCKEVNIEPKRDPSNNASSYTRNRFRHTIIPFIRGENPNAHLHFRRISEWKEEDECFLL 235

Query: 232 NAVAMLIPKYLTVHMRSIIAISQD-ILNIDSTLLFYLL-RVSAAICGGQISLPGYRSMER 289
           +     +   L      ++ I +D  LN+   L   ++  +   +        G+  +ER
Sbjct: 236 DLAENALADVLLHKDEHLVTIDRDAFLNVGLPLQRRMIHLILKYLYTNDSPANGFIHIER 295

Query: 290 VMLFLKSGKRGCVSIG---RVVIDRRANFLWITRAVRNLPTLILYP------EETTVWDG 340
           +   +++   G   +     + ++R    +   RA      + +YP       + +   G
Sbjct: 296 IETLIRNDVTGT-KLHLPMGITVERVYGQIRWVRASGEKQPVPVYPVVIEGEGQVSTPFG 354

Query: 341 RYQFQNLSDSLIQIGP 356
           R+    L      + P
Sbjct: 355 RFCVVQLVSGPRSMSP 370


>gi|256762058|ref|ZP_05502638.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3]
 gi|256964186|ref|ZP_05568357.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704]
 gi|256683309|gb|EEU23004.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis T3]
 gi|256954682|gb|EEU71314.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis HIP11704]
          Length = 462

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI 304
            S+
Sbjct: 303 GSV 305


>gi|126733590|ref|ZP_01749337.1| Probable cell cycle protein [Roseobacter sp. CCS2]
 gi|126716456|gb|EBA13320.1| Probable cell cycle protein [Roseobacter sp. CCS2]
          Length = 424

 Score =  219 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 90/398 (22%), Positives = 155/398 (38%), Gaps = 22/398 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I ++VSGG DS+ L+     +   +     +   ++VDH LR  A+ E+  V+   + L 
Sbjct: 29  IGLSVSGGGDSIALMHLAARLRDPK-----RLRVLTVDHGLRPEAQQEIALVASQAADLN 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H+V+ W     Q  L AAAR  R+A +S  A   N   +   HT DDQ+ETV MR  R
Sbjct: 84  IDHAVMPWT-WDGQGNLQAAARARRWAAVSAWAAMHNMREVWLGHTEDDQVETVLMRLAR 142

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+        +    +L I RP L C R D+R +L    I WCEDPSN D RF+R
Sbjct: 143 GSGIDGLTAMY---PLSERDDLRILRPLLGCARADLRHWLQSNKIPWCEDPSNDDPRFDR 199

Query: 202 VRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           VR R+    ++        L   +   Q   + +  A      +++      ++     +
Sbjct: 200 VRARQMFAQLEGLGLTRKRLLQTIDHMQAAHLSLQIAAHGFARQHVRQDAGDLLCDPPAL 259

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
               +     ++  + A  G +   P +  +   +   + G    V++   ++    N +
Sbjct: 260 DLQKADAPRRVMAAAFAWVGSRTYRPRFEQLLDTVARARKG--MTVTLAGCIMTPEPNGI 317

Query: 317 WITRAVRNLPTLILYPE-----ETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371
                          P          WD R+  +      +          + P+     
Sbjct: 318 VRLTREAAATAATRRPTPKPDMTGAFWDHRWFLEGPVQDSLTFKALGDGIMECPNWRDSG 377

Query: 372 IAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAF 408
           + + +L + PS   G  ++ AP +     +   +   F
Sbjct: 378 MPRTSLLASPSVWEGDVVIAAPLAGLSNGWSARIVADF 415


>gi|323705585|ref|ZP_08117159.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535062|gb|EGB24839.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 460

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 136/337 (40%), Gaps = 26/337 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S  ++++ + + +     I+V VSGG DS+ LL  L  +   +   K+K   + V+H
Sbjct: 1   MIDSFEKTIKEY-KMIEKGDKIVVGVSGGPDSICLLNLLLEI---KERYKLKLFVVHVNH 56

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAK 115
            LR   A  +  +V   C  + I        V     +      AA RE RY+  ++  K
Sbjct: 57  MLRGADADSDALFVEKFCKGINIPFFLFKEDVRRYAEENGLSEEAAGREIRYSAFNKVLK 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I  AH  +D  ETV +   R     G+         +  +N  I RP ++ +R 
Sbjct: 117 EVGGNKIAIAHNKNDVAETVLLNILRGAGTTGL-------VGIKPVNGCIIRPLIQTKRR 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID--------LHALYLKMKKFQDLR 227
           +I  +L  +N+ + ED +N +D + R R+R  +            +  LY   +   D  
Sbjct: 170 EIIDYLNSKNLEFVEDVTNKEDAYRRNRIRLKLIPFIEEYFDIDMVENLYRTSQIVLDDE 229

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             ++     +  +   +   ++      I  + S++   ++R++     G  +   ++ +
Sbjct: 230 DYLSRESEKIFNEIADIDNGNVKLDIDGIKKLHSSIKRRVIRLAYKKLKGDFNQLAFKHV 289

Query: 288 ERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAV 322
           E V+  +  ++  +  +     VI    N ++  R  
Sbjct: 290 EDVLDIMDKQTSSKIDLPFEIEVIKSYNNLIFRKRNF 326


>gi|323479476|gb|ADX78915.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis 62]
          Length = 462

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQHFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI 304
            S+
Sbjct: 303 GSV 305


>gi|294635147|ref|ZP_06713656.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda ATCC 23685]
 gi|291091452|gb|EFE24013.1| tRNA(Ile)-lysidine synthetase [Edwardsiella tarda ATCC 23685]
          Length = 439

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 165/413 (39%), Gaps = 30/413 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ ++        L    H+LVA SGG DS  LL AL  + + R   +++   + V H L
Sbjct: 1   MNTLDIQMHIADKLAGRRHLLVAFSGGLDSTVLLHALVQLRATR-LPQLRLRVVHVHHGL 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              A   V +   VC   ++   V+  +    +  + AAAR+ARY  I+    +     +
Sbjct: 60  SAFADQWVEHCESVCHHWQVPLHVLHVQVDTQRNSVEAAARDARYRAIAALIGSH--ETL 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TA   DDQ ET  +  +R       GLS M +++ +       RP L   R  + S+  
Sbjct: 118 LTAQHLDDQCETFLLALKRGSGP--TGLSAMAESMPFFATEQ-RRPLLGLSRRQLLSYAQ 174

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             +++W ED SN D RF+R  +R  +  +    L  +   F +   +  +  A       
Sbjct: 175 AHHLTWVEDDSNADARFDRNFLRMRIVPL----LRARWPHFSEAVARSASLCAEQEQLLD 230

Query: 243 TVHMRSIIAIS--------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--- 291
            + + S+ A+           +L +     + LLR   A  G  +++P    ++R+    
Sbjct: 231 ELLLESLQALMSEDDSLSVDGLLPLSEAKRYALLRRWIACFG--VTMPTREQLQRLWHEV 288

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
              +      + +    I R    L++  A+R+L   +L       WD R Q  +L D L
Sbjct: 289 ALARDDAEPQLHLANSQIRRFRRRLYLLPAMRSLRDEVLS------WDPR-QPLSLPDGL 341

Query: 352 IQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404
            ++   S   A         ++ R  +    +  G+    P  +   +  +P 
Sbjct: 342 GELQLGSRGIAVRAPAADEAVSIRFCAQGVLRIVGRRHSRPIKKIWQELHIPP 394


>gi|315145393|gb|EFT89409.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX2141]
          Length = 497

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 225 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 280

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 281 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 337

Query: 302 VSI 304
            S+
Sbjct: 338 GSV 340


>gi|255971763|ref|ZP_05422349.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1]
 gi|257421552|ref|ZP_05598542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98]
 gi|255962781|gb|EET95257.1| tRNA(Ile)-lysidine synthetase, MesJ [Enterococcus faecalis T1]
 gi|257163376|gb|EEU93336.1| tRNA(Ile)-lysidine synthase [Enterococcus faecalis X98]
          Length = 462

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI 304
            S+
Sbjct: 303 GSV 305


>gi|167465338|ref|ZP_02330427.1| tRNA(Ile)-lysidine synthetase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 424

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 74/319 (23%), Positives = 130/319 (40%), Gaps = 29/319 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++VAVSGG DS+ LL  L+ +  ++ +   K  A  V+H  R E + +E +YV    S L
Sbjct: 23  VVVAVSGGPDSIALLHMLYRLSDEQGW---KVIAAHVNHQFRKEESAEEAKYVMSFASGL 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    V     +       AARE RY  + + A   NA  I  AH  DDQ ETV 
Sbjct: 80  GIPCEVGVIDVPAYIRETSLNPQVAAREKRYEFLHKIANVYNADKIALAHHADDQAETVL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G+    +      + N+ + RP LR  + ++ S+  +  + +  D SN  
Sbjct: 140 MRIVRGTGLSGLTGIPIKRK---EKNVELVRPMLRIYKNEVISYCHEHQLHFFRDSSNDS 196

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAIS 253
            ++ R +VR  V    L  L    +   +   ++   V      + +     M S++   
Sbjct: 197 RKYFRNQVRLDV----LPFLSSYNEHLPEALNRLAEMVKGEDDYMDEQARREMSSLVKCQ 252

Query: 254 QD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
           +D         L++   L   ++++       Q     + ++E++ L +       V + 
Sbjct: 253 KDSYSFGRTAFLSLHLALQRRVIKLILNYLALQAEKIDFITVEQIRLAILQDAHSNVRLN 312

Query: 306 ---RVVIDRRANFLWITRA 321
               ++  R    + I + 
Sbjct: 313 LPEELLFIREYEAIRIQKE 331


>gi|269960608|ref|ZP_06174980.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834685|gb|EEZ88772.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 448

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 134/329 (40%), Gaps = 22/329 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETA 66
           R       I++A SGG DS  LL  L       S          +   A+ V H L   A
Sbjct: 14  RYYQSGTKIVLAFSGGVDSRLLLELLSRYRQANSIDNQSAGSKSVSCHAVYVHHGLSSNA 73

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            +          +  I+ SV     +      +   AREARY  +++H +     L++T 
Sbjct: 74  DNWANQCLVWAQQAGISCSVEHVNLDINSGESIELLAREARYQALAKHIQM--GDLLLTG 131

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ+ET  +  +R    KG  LS M +++ +  +  + RP L  +RE I +   ++ 
Sbjct: 132 QHADDQVETFLLALKRGSGPKG--LSSMAESMPFA-DGTLVRPLLAVKREQIEAVAKEQK 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +SW ED SN D R++R  +R  +         +++  +++   L  +    +  L+    
Sbjct: 189 LSWVEDESNQDIRYDRNFLRHHIVPELSERWPSIHQAVQRSASLCAQQEALLDELLSVVF 248

Query: 243 TVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML---FLKSGK 298
              ++S +++S + L   S L    L+R+  A     +++P    +  +       +   
Sbjct: 249 ERALQSDLSLSIEELATHSELARARLVRMWLAKL--NVNMPTQVQLNLIWNEVGLAQQDA 306

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPT 327
              + + +  + R  N L+      +L T
Sbjct: 307 NPKLQLKQGEVRRFQNRLYWVTETADLTT 335


>gi|269797565|ref|YP_003311465.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008]
 gi|269094194|gb|ACZ24185.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula DSM 2008]
          Length = 332

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 134/311 (43%), Gaps = 24/311 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA SGGSDSM LL  L  + + R     +     VDHC+R  +KDEV ++      L
Sbjct: 25  RILVACSGGSDSMALLHLLQDIATHR-HTVYELGVAIVDHCIRPESKDEVLWLRTQVDVL 83

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +      +   K     +       R+ RY  +++ A++     I  AH  DDQ E++ 
Sbjct: 84  GLPFYTAVFDVPKLSQAQKLSEETIGRQVRYQWLTDIAQSEGYDYIAVAHHKDDQAESIL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R     G  L+GM   +  D  + + RP L   +E++  +L +++IS+C D +N D
Sbjct: 144 AHLIRGTGLNG--LTGMA-VVSNDYTVPVVRPLLDVTKEELLLYLKEKDISYCIDSTNED 200

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-----------MLIPKYLTVH 245
            R++R R+R  +    +  L        +  V++ N+V            M+  + +T+ 
Sbjct: 201 VRYQRNRIRHRI----IPELETINPNVVNAIVRLGNSVCEDVSLISNLTDMVFDELVTIS 256

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
                   +++      +   L +   +I   +I L      E+++  + +G+    +I 
Sbjct: 257 DEGAFISRRELRKEPLAIQRRLWQRLVSILDSEIKL-TTAHQEQLLDIVNTGEEKTFNIK 315

Query: 306 RVVIDRRANFL 316
            + +  + + +
Sbjct: 316 SIKVSAQCDTI 326


>gi|121535066|ref|ZP_01666883.1| tRNA(Ile)-lysidine synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306316|gb|EAX47241.1| tRNA(Ile)-lysidine synthetase [Thermosinus carboxydivorans Nor1]
          Length = 468

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 77/353 (21%), Positives = 127/353 (35%), Gaps = 26/353 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  ++++    R L     ++VA SGG DS+ L+  LH +     F         VDH
Sbjct: 1   MILEKVKALVERRRLLTAGDRVVVACSGGPDSLALVHLLHRLQPAYGF---DMVVAHVDH 57

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115
            LR   +  E  +V   C RL +   V    V    ++        AR  RYA +   A 
Sbjct: 58  MLRGAESAREAEFVRAFCRRLGLDCQVAAIDVPGVLAERGGSTQEVARTLRYAFLRRVAD 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           ++    I T H  DDQ ETV +   R     G  L GM           I RP L   R+
Sbjct: 118 SLGGAKIATGHHRDDQAETVLINFLRGAGPGG--LRGMQPAA-----GGIIRPLLSVTRQ 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227
           +I  +     ++ C D SN    + R RVR  +  +            L    +   D  
Sbjct: 171 EIEDYCAAEGLTPCLDSSNLHTDYLRNRVRLELLPLLAREYNPAIGENLARLAEIMADQY 230

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +    A +  +        +   S  +  + + L   +LR++     G ++   +  +
Sbjct: 231 DFLKQCAADVYTRVADETEGRLALDSAALAALPTALRREVLRLAIEKKRGSLTGISFWHV 290

Query: 288 ERVMLFLKSGKRG---CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
           E+++     GK G    +  G   +        + RA      + + P    +
Sbjct: 291 EKLLEMALDGKVGSLFTLPGGLSFVRTYDGLATVDRAGSARAAVGIAPPGRAL 343


>gi|312901065|ref|ZP_07760354.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470]
 gi|311291811|gb|EFQ70367.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TX0470]
          Length = 497

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 62/297 (20%), Positives = 119/297 (40%), Gaps = 16/297 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM L   +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALFTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 108 CQQRELTYYETRWEDPEKQRNLEAKARTFRYDFFKEVMEIEGAAVLMTAHHLDDQAETIL 167

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 168 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 224

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQD-------LRVKVNNAVAMLIPKYLTVHMRSI 249
           + + R R+R  V  +        + +           +  +   +   + + +    +  
Sbjct: 225 NEYLRNRLRNQVLPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPTKQGW 284

Query: 250 IAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
               + +L        + L       +    +SL   R M +++  L   ++   S+
Sbjct: 285 RFNPKRLLKETPAYQHFFLTAFFQKTLVPLGVSL-NQRQMTQILKVLNDERQPQGSV 340


>gi|217965695|ref|YP_002351373.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23]
 gi|217334965|gb|ACK40759.1| bifunctional protein TilS/hprT [Listeria monocytogenes HCC23]
 gi|307569758|emb|CAR82937.1| bifunctional protein TilS/HprT [Listeria monocytogenes L99]
          Length = 648

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A +E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSDLVPKEAISVAHLNHHLRENAANEQNVVETFC 76

Query: 78  SRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   +       +    Q G+   AR  RY    +     N   +  AH  DDQ+E
Sbjct: 77  ERHGIPFYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I ++  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  ++Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPSVYAHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +     N  + L    + +  
Sbjct: 254 KQTTLLLTSFKNEANPLQRRAIHLLL 279


>gi|313625438|gb|EFR95195.1| bifunctional protein TilS/hprT [Listeria innocua FSL J1-023]
          Length = 453

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 119/326 (36%), Gaps = 21/326 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS  LL  L    S +   K   +   ++H LRE A+ E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSFALLHFL---WSAKLVPKEAIAVAHLNHHLRENAEKEQLAVQTFC 76

Query: 78  SRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I   +    V  +  K Q G+   AR  RY    +     N   ++ AH  DDQ+E
Sbjct: 77  EERDIPFFIEEVDVKKRAEKLQKGIEETARIIRYGFFEKVMAENNINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  +   +G SG+           I RPFL   + +I  +     + +  D S
Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKREVRGGYAI-RPFLPITKAEIIEYANTHTLPYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   K+F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRTQLLPFLSKENPAVYDHFKRFSEETSEDFQFLEELASNLLKKNLIQNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAIC----GGQISLPGYRSMERVMLFLKSGKRGCV 302
           +    +  D  N  + L    + +         G  I++     + +++          +
Sbjct: 254 KQSTLLLSDFKNEANPLQRRAIHLLLMYLYNDDGRVITVNHIYQIIQMIQSENPSSSIDL 313

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTL 328
                VI       +        P  
Sbjct: 314 PKKLTVIRSYNELHFQFGERHAPPEF 339


>gi|94501920|ref|ZP_01308430.1| Cell cycle protein MesJ [Oceanobacter sp. RED65]
 gi|94425973|gb|EAT10971.1| Cell cycle protein MesJ [Oceanobacter sp. RED65]
          Length = 446

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 112/307 (36%), Gaps = 14/307 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + V +SGG DS+ LL      + +     ++   I V+H L E A    ++V  +C   
Sbjct: 25  RLYVGLSGGIDSVVLLFLCKQFV-EYHHSSVELHGIHVNHGLSEFADQWQQHVEGLCEAW 83

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I       +  + +  +   AR ARY             +++  H  DDQ+ET+  R  
Sbjct: 84  SIPLVSHRVELEQ-KGSIEEVARNARYDAFKRSLDDQ--DVLVLGHHQDDQVETMMQRLM 140

Query: 141 RDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           R     G+    +  T+    N    I RP L   ++ I  +     + + +D SN D +
Sbjct: 141 RGSGLSGLLSMNVARTLDLGNNKQAIILRPLLSTTKKQIEQYANDHQLKYVQDDSNLDTQ 200

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIAISQD 255
           F+R   R  V  +  +      +  Q     +    + L   + + L   + S  +++  
Sbjct: 201 FDRNFWRLQVLPLIENRYPQYRQSVQASLNALQEEQSCLQFFLQQALEKVLLSDASLAIS 260

Query: 256 ILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311
           +L      +   ++R           LP    ++ +   ++  +             + R
Sbjct: 261 VLQQYPKFIQQQIIRYWLQFNE-IFPLPTQSQLDTIFDEVIAAREDAEPRFHWQTHSLAR 319

Query: 312 RANFLWI 318
             N L++
Sbjct: 320 YRNGLFL 326


>gi|16802265|ref|NP_463750.1| hypothetical protein lmo0219 [Listeria monocytogenes EGD-e]
 gi|47097258|ref|ZP_00234818.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes str. 1/2a F6854]
 gi|224500330|ref|ZP_03668679.1| hypothetical protein LmonF1_11939 [Listeria monocytogenes Finland
           1988]
 gi|224503461|ref|ZP_03671768.1| hypothetical protein LmonFR_13287 [Listeria monocytogenes FSL
           R2-561]
 gi|254900996|ref|ZP_05260920.1| hypothetical protein LmonJ_14318 [Listeria monocytogenes J0161]
 gi|254913936|ref|ZP_05263948.1| tilS/hprT [Listeria monocytogenes J2818]
 gi|254938274|ref|ZP_05269971.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900]
 gi|284803042|ref|YP_003414907.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578]
 gi|284996183|ref|YP_003417951.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923]
 gi|61216688|sp|Q8YAC7|TILS_LISMO RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName:
           Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
           Full=Hypoxanthine-guanine phosphoribosyltransferase;
           Short=HGPRT; Short=HGPRTase
 gi|16409584|emb|CAD00746.1| fusion protein, N-terminal part similar to B. subtilis YacA
           protein, C-terminal part similar to hypoxanthine-guanine
           phosphoribosyltransferase [Listeria monocytogenes EGD-e]
 gi|47014358|gb|EAL05331.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258610884|gb|EEW23492.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes F6900]
 gi|284058604|gb|ADB69545.1| hypothetical protein LM5578_2799 [Listeria monocytogenes 08-5578]
 gi|284061650|gb|ADB72589.1| hypothetical protein LM5923_2748 [Listeria monocytogenes 08-5923]
 gi|293591954|gb|EFG00289.1| tilS/hprT [Listeria monocytogenes J2818]
          Length = 648

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A  E R V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   +            Q GL   AR  RY    +     N   ++ AH  DDQ+E
Sbjct: 77  ERQGIPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +     N  + L    + +  
Sbjct: 254 KQTTLLLSSFKNEANPLQRRAIHLLL 279


>gi|317126809|ref|YP_004093091.1| tRNA(Ile)-lysidine synthetase [Bacillus cellulosilyticus DSM 2522]
 gi|315471757|gb|ADU28360.1| tRNA(Ile)-lysidine synthetase [Bacillus cellulosilyticus DSM 2522]
          Length = 471

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/349 (24%), Positives = 145/349 (41%), Gaps = 30/349 (8%)

Query: 7   ESVRFFVR--SLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V  F++   L+Y    I+VAVSGG DSM LL  L  V  D     ++     V+H LR
Sbjct: 3   QIVNEFIKDHQLIYEKDRIIVAVSGGPDSMALLHYLQMVKRD---YHLQLIVAHVEHGLR 59

Query: 64  E-TAKDEVRYVSDVCSRLRIAHSVV--SWKNSKPQTGL--MAAAREARYALISEHAKTIN 118
              + ++  +V   C   ++   +   +    K + GL    AAR +RY    +  +   
Sbjct: 60  GVESVNDCNFVKSYCEENKLDFFLYEPNVMAMKEELGLSTQEAARFSRYQWFEKLMEEHK 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT +  AH  DDQ+ETV M+  R        L G+     +  N  I RPFL   + DI 
Sbjct: 120 ATKLAFAHHGDDQVETVLMKQVRGSVVS---LQGIPVKRQFG-NGMIIRPFLCVEKSDIL 175

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNN--- 232
            +  + +I +  D SN  D ++R R R+++      +  +++   ++  ++  + N    
Sbjct: 176 EYCQEHHIQYRIDQSNDSDNYKRNRFRKYILPFLKEENPSIHKTFQRQSEISTEENEFLQ 235

Query: 233 -AVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFY----LLRVSAAICGGQISLPGYRS 286
               M + K +  H  S I IS Q +L + +TL       +L   +   G +I++  + S
Sbjct: 236 SLAKMEVEKAIDYHQESEICISNQRLLQMPTTLQRRALHLILNYLSLNSGREITVHHFDS 295

Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLW---ITRAVRNLPTLILYP 332
           +  ++          +  G  V       L+   I +           P
Sbjct: 296 IIELIKKASPSGMLHLPKGIFVEKVYDKCLFKVNIHKERPETIQFTKIP 344


>gi|225075259|ref|ZP_03718458.1| hypothetical protein NEIFLAOT_00262 [Neisseria flavescens
           NRL30031/H210]
 gi|224953434|gb|EEG34643.1| hypothetical protein NEIFLAOT_00262 [Neisseria flavescens
           NRL30031/H210]
          Length = 441

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/323 (26%), Positives = 138/323 (42%), Gaps = 34/323 (10%)

Query: 19  PAHIL--VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           P+H +  V +SGG DS+ LL  LH +   R F      A+ V H L   A    ++  D 
Sbjct: 21  PSHTVFEVGLSGGLDSVVLLHLLHRM---REFRYFDLRAVHVHHGLSTNADSWAKFCQDY 77

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C RL +A  V      K   GL AAAR ARY   S+  K I    I+ AH  +DQ+ET  
Sbjct: 78  CQRLNVALRVCRVNVEKQGKGLEAAARAARYQAFSDGLKKI----IVLAHHRNDQIETFM 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           + + R    +GM    +   +  ++ +W  RP L   R+++  +  Q  +S+ ED SN D
Sbjct: 134 LSAVRGGGLRGMAAMPVWRDLNEEIQIW--RPILAFSRQELVEYAQQWGLSFVEDESNED 191

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQD--------LRVKVNNAVAMLIPKYLTVHMRS 248
             + R  +R       L     ++  F+         L+  +     ++  +Y  +    
Sbjct: 192 SGYLRNWMRNQ----ALPQWQQRIPNFEQQICANVRLLQEDLQLLDELIESEYQRISPNG 247

Query: 249 IIAIS---QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI- 304
           I ++S   Q    +   LL+Y LR          SLP Y S+      L++  +  +++ 
Sbjct: 248 IFSVSLWRQCTPLLRRRLLWYFLRKQT------ESLPSYHSIADFARVLETADQAQLNLS 301

Query: 305 -GRVVIDRRANFLWITRAVRNLP 326
            G +V  R   F+      + LP
Sbjct: 302 DGELVAYRDKLFVCQESEFQKLP 324


>gi|254829310|ref|ZP_05233997.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165]
 gi|258601723|gb|EEW15048.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N3-165]
          Length = 648

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A  E R V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   +            Q GL   AR  RY    +     N   ++ AH  DDQ+E
Sbjct: 77  ERQGIPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +     N  + L    + +  
Sbjct: 254 KQTTLLLSSFKNEANPLQRRAIHLLL 279


>gi|300861978|ref|ZP_07108058.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11]
 gi|295112548|emb|CBL31185.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Enterococcus sp. 7L76]
 gi|300848503|gb|EFK76260.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecalis TUSoD Ef11]
          Length = 462

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 126/303 (41%), Gaps = 28/303 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 16  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVIAHVNHQLREASAQEAQYLATY 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +    W++ + Q  L A AR  RY    E  +   A ++MTAH  DDQ ET+ 
Sbjct: 73  CQQRELTYYETRWEDPEKQRNLEAKARTFRYEFFKEVMEIEGAAVLMTAHHLDDQAETIL 132

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         +G+ +   +     + RP L   +E++  F  ++   + ED +N  
Sbjct: 133 MKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYPKEELYQFAQRQAFVYFEDETNQT 189

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAIS 253
           + + R R+R  V    L  L  +  +F D     +N        I + +   +   +  +
Sbjct: 190 NEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNEQRFAQEFIQEQIEPQLSEAVEPT 245

Query: 254 QDILNIDSTLLFYLLRVSAA-------ICGGQISLP-----GYRSMERVMLFLKSGKRGC 301
           +    I    L  LL+ + A           +  +P       R M +++  L   ++  
Sbjct: 246 KQGWRIP---LKRLLKETPAYQHFFLTAFFQKTLVPLGVSLNQRQMTQILKVLNDERQPQ 302

Query: 302 VSI 304
            S+
Sbjct: 303 GSV 305


>gi|237723186|ref|ZP_04553667.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447708|gb|EEO53499.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 426

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 136/392 (34%), Gaps = 65/392 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE    F       A +L+A+SGG+DS+ LL  LH+             A   +  LR E
Sbjct: 10  IEKEHLFS----LDAKVLIALSGGADSVALLCILHT-------AGYHCEAAHCNFHLRGE 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C R  I    + +       + Q  +  AARE RY    +  K   A 
Sbjct: 59  ESDRDELFVRQLCKRTGIHLHTIDFNTTQYAKEKQISIEMAARELRYDWFEKTRKECQAD 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET+ +   R     G+         +   N  I RP L   RED+  +
Sbjct: 119 VIAVAHHQDDSVETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNREDVIHY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L      +  D +N +D + R ++R  +  +         K   D    +N+   +    
Sbjct: 172 LESIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKKNLIDTSNYLNDVATIYNKC 231

Query: 241 YLTVHMR----SIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSME----RVM 291
                        I IS  +       +LF +L              G+ S +       
Sbjct: 232 IEETKNNIVTTEGIRISDLVKEPAPEAILFEIL-----------HPLGFNSAQIKDIAFS 280

Query: 292 LFLKSGKRGCVSIGRVVIDRR---------ANFLW----ITRAVRNLPTLILYPEETTVW 338
           L  + GK+ C    RV+ DR           N +     I +  +      L P +  + 
Sbjct: 281 LHSQPGKQFCSKKWRVIKDREFLLIEAIESGNEILPPFQIIKEEKEYTPAFLIPRDKGIA 340

Query: 339 ---------DGRYQFQNLSDSLIQIGPQSYRK 361
                    D  Y+     D+ I  G +  +K
Sbjct: 341 CFDADKLNGDIHYRKWQTGDTFIPFGMKGKKK 372


>gi|270264801|ref|ZP_06193065.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera 4Rx13]
 gi|270041099|gb|EFA14199.1| tRNA(Ile)-lysidine synthetase [Serratia odorifera 4Rx13]
          Length = 441

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/423 (22%), Positives = 162/423 (38%), Gaps = 28/423 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L    H+LVA SGG DS  LL  L  +   R +  ++  A+ V H L   A + V + 
Sbjct: 17  RQLGTKRHLLVAFSGGLDSSVLLHLLVGLR--RQWPDLQLRAVHVHHGLSAFADEWVAHC 74

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              C+  ++   V   +      G+ AAAR ARY+  +         +++TA   DDQ E
Sbjct: 75  QRQCAAWQLPLVVQHVQVDGRLGGIEAAARAARYSAFAATLAA--DEVLLTAQHLDDQCE 132

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +  +R       GLS M        N  + RP L   R  +  +  Q  ++W ED S
Sbjct: 133 TFLLALKRGSGP--AGLSAMAAQASLGSNP-LLRPLLGMSRLQLEDYAQQHQLTWIEDDS 189

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D RF+R  +R  V  + L+  +            +      L+ + L   +++++   
Sbjct: 190 NQDPRFDRNFLRLQVLPL-LNQRWPYFAAATARSASLCAEQEQLLDELLAEQLQALLDED 248

Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305
                  +L   S   F LLR   A+ G  +++P    ++R+       +      +  G
Sbjct: 249 NALAIDGLLGCSSARRFALLRRWIALFG--VTMPSREQLQRLWDEVALCRDDAEPKLQPG 306

Query: 306 RVVIDRRANFLWITRAVRNLPTLIL---YPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362
              I R    L++   + +L  + L     E   + DG  +  +    +    PQ  +K 
Sbjct: 307 PYQIRRFRRRLYLLPIMADLREVSLDWSLAEALELPDGLGKLSSGEGDICLRAPQPQQKV 366

Query: 363 DV---PSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK---FDLPVAYAFSISFGKVF 416
            V     G   I+ +     +      +  + P+ R  T    +D  +  A  +   +  
Sbjct: 367 SVRFAAQGKIRILGRAHSRPVKKLW-QELGVPPWQRERTPLIYYDDQLIAALGVFVSEAG 425

Query: 417 IPR 419
            P 
Sbjct: 426 QPP 428


>gi|47093161|ref|ZP_00230936.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes str. 4b H7858]
 gi|226222848|ref|YP_002756955.1| hypothetical protein Lm4b_00217 [Listeria monocytogenes Clip81459]
 gi|254933059|ref|ZP_05266418.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|21667249|gb|AAM74001.1|AF467001_2 YacA/HprT-like protein [Listeria monocytogenes]
 gi|47018468|gb|EAL09226.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes str. 4b H7858]
 gi|225875310|emb|CAS04007.1| Hypothetical protein of unknown function [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293584617|gb|EFF96649.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|332310628|gb|EGJ23723.1| Bifunctional protein tilS/hprT [Listeria monocytogenes str. Scott
           A]
          Length = 648

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A +E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHINHHLRENAANEQNVVEAFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I   +            Q G+   AR  RY    +         +  AH  DDQ+E
Sbjct: 77  ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +  +  N  + L    + +  
Sbjct: 254 KRTTLLLTNFKNEANPLQRRAIHLLL 279


>gi|293372701|ref|ZP_06619083.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f]
 gi|292632510|gb|EFF51106.1| tRNA(Ile)-lysidine synthetase [Bacteroides ovatus SD CMC 3f]
          Length = 426

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 124/337 (36%), Gaps = 45/337 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE    F         IL+A+SGG+DS+ LL  LH+             A   +  LR  
Sbjct: 10  IEKEHLFS----PDDKILIALSGGADSVALLYILHT-------AGYHCEAAHCNFHLRGK 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C R+ I    + +      ++    +  AARE RY    +  K   A 
Sbjct: 59  ESDRDELFVRQLCERMEIHLHTIDFNTTQYATEKHISIEMAARELRYQWFEKIRKKCQAD 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           ++  AH  DD +ET+ +   R     G+         +   N  I RP L   RE+I  +
Sbjct: 119 VVAVAHHQDDSIETILLNLIRGTGITGL-------LGIRPRNGAIVRPLLCINREEIIRY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L      +  D +N +D + R ++R       + +     + L        D+    N  
Sbjct: 172 LQNIGQDYVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNTLVDTSNYLNDVATIYNKC 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--M 291
           +     K +T     I  + ++       +LF +L                  ++ +   
Sbjct: 232 IEETKKKIITAEGIRICDLVKEP--APEAILFEVL---------HPLGFNSAQIKDIAHS 280

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328
           L  + GK+ C    RV+ DR   FL I  A     TL
Sbjct: 281 LHSQPGKQFCSKEWRVIKDRE--FLLIETAESKNETL 315


>gi|325264332|ref|ZP_08131063.1| tRNA(Ile)-lysidine synthase [Clostridium sp. D5]
 gi|324030403|gb|EGB91687.1| tRNA(Ile)-lysidine synthase [Clostridium sp. D5]
          Length = 470

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 106/293 (36%), Gaps = 24/293 (8%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEV 70
           F   +     ++  +SGG+DS+ LL  L  +  +     I+  A+ V+H LR  A   + 
Sbjct: 10  FYHMIENGDKVIAGISGGADSVCLLFVLLKLREEMG---IEIVAVHVNHGLRGEAAKRDE 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +V ++C   R+   V          K +  +  A R  R     +       T I  AH
Sbjct: 67  EFVQELCREHRVKCVVYRENVESISKKRKQSVEEAGRVVRREAFEKTLVECGGTKIAMAH 126

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +D  ET+ M   R    KG+G        +  +   I RP L   R +I  ++     
Sbjct: 127 HQNDNAETLLMNLARGTGLKGLG-------GIQPVAGKIIRPLLCLNRREIEQYVEAIGC 179

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +C D +N +D + R R+R  V  +         +  +   M++ + L+  +        
Sbjct: 180 GYCRDETNDEDDYTRNRLRHQVIPVLEEQVNAQAVRHMNEAMEQIRGLQDYMEIQTEEAY 239

Query: 239 PKYLTVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
              +       + I  D   ++   L   L+R       G         +E V
Sbjct: 240 RDCVAEREDGALCIHADEYRSLHQVLQGLLIRKCLGRAAGAERDITMAHVEAV 292


>gi|145589046|ref|YP_001155643.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047452|gb|ABP34079.1| tRNA(Ile)-lysidine synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 442

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 143/400 (35%), Gaps = 37/400 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + S R     L     I VA+SGG DS+ LL  +    +       +  A  + H L++ 
Sbjct: 1   MASSRKSQSKLKSQKRIAVALSGGLDSVVLLDTVCKAQTTYKDSPTEIWAFHIHHGLQKP 60

Query: 66  AKDEVRYVSDVCSRLRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           A D + +   +  + +I     ++       Q  + A AR  RY  ++E         ++
Sbjct: 61  ADDWLIFCEKLAKKYKIGFDFRLLHLAQDTDQGNVEARARAGRYEALAELCVEYGIGDLL 120

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCRREDIRSFLL 182
            AH  +DQ ETV ++  R     G+        + +D   + + RP L   R ++  +  
Sbjct: 121 LAHHQNDQAETVLLQLLRGAGVAGLSGMPHERELTHDQSRITLWRPLLNQSRAELEVYAK 180

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI---- 238
              + W EDPSN   +F R  +R+ +           +         ++ A A+L     
Sbjct: 181 ANKLKWIEDPSNQKTQFRRNAIRKQIIPRLEKIQPAAVANLARSANLMSEAQALLDRLAK 240

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---K 295
               ++ ++  +AI   ++   S L      V   +   Q+ +P    ++   L L   +
Sbjct: 241 EDGKSILLKDGVAIKPLLILAQSDLGAANNVVRYWLKTHQLGMPSQERLQAWWLDLQNTR 300

Query: 296 SGKRGCVSIGRVVIDRRANFL---------WITRAVRNLPTLILYPEETTVW------DG 340
              +       V +      L         WI    + +P+          W      +G
Sbjct: 301 QDAQLEWLHDGVSLRVWRGHLQAITKTSGRWI---FQAIPSKSQRLGLAAAWVKNAQENG 357

Query: 341 RYQFQ-NLSDSLIQIGPQSYRK--------ADVPSGIPPI 371
           R +F+       IQI P S RK        +D+P      
Sbjct: 358 RVEFRMRSGSEKIQIKPNSPRKTLKNLFQESDIPPWQRQA 397


>gi|210623231|ref|ZP_03293670.1| hypothetical protein CLOHIR_01620 [Clostridium hiranonis DSM 13275]
 gi|210153768|gb|EEA84774.1| hypothetical protein CLOHIR_01620 [Clostridium hiranonis DSM 13275]
          Length = 461

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 124/323 (38%), Gaps = 25/323 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76
           Y   I+V +SGG DS+ LL  L+ +   R+   +K  A  ++H +R   A+ +  +VS++
Sbjct: 18  YGDKIIVGLSGGPDSVCLLHILNRLKESRN---LKIYAAHLNHQIRGIEAQKDALFVSEL 74

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  L I   + S    K        L   AR  RY +  E  +   A  I   H  +DQ 
Sbjct: 75  CDSLEIPVFIKSVDVPKYCEEKGLSLEEGARNIRYDMFYEIKRRTGANKIAIGHNMNDQA 134

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV MR  R    +G+        I Y     I RP L   R+DI ++  Q  +    D 
Sbjct: 135 ETVMMRIMRGTGLQGL------RGIEYTRENGIIRPILDIERKDIEAYCEQHELHPKIDQ 188

Query: 193 SNTDDRFERVRVRRFVRDIDLHA--------LYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           +N +  + R R+R  +               +       +     +++       +  T+
Sbjct: 189 TNLESIYTRNRIRLELLPYMQEHFNSNVVESIVRLSNSMKSDGDYLDSEAMKAYDEVATL 248

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV-- 302
             +++    + +      +   ++R +     G  +    + +E V+  + + K G +  
Sbjct: 249 DDKAVEVNVEKLSGYHEAIQSRIIRYAIKDVLGDTNFVDQKHIEDVIQLIDTSKNGKMLN 308

Query: 303 -SIGRVVIDRRANFLWITRAVRN 324
              G     R  + L+    ++ 
Sbjct: 309 LPRGVFAYRRANSILFTLEEIKE 331


>gi|239993621|ref|ZP_04714145.1| cell cycle protein MesJ [Alteromonas macleodii ATCC 27126]
          Length = 441

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 123/334 (36%), Gaps = 24/334 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L     ++VA SGG DS  LL A   V++ R        A+ V H L + A+   ++  
Sbjct: 24  ELPLQTPLVVAYSGGVDSTVLLQA---VIAYREQFDSPIHAVHVHHSLSDNAEQWAKHCE 80

Query: 75  DVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             C    +A  +         +  L A AR+ RY  + E    I   +++     +DQLE
Sbjct: 81  LQCRLEDVAFHLYRVDVDTGSRKSLEAEARKVRYNALLEVCDQIGG-VLLLGQHAEDQLE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV ++ +R    +G+   G    + Y  +  I RP L   + +I ++  +  + W ED S
Sbjct: 140 TVLLQLKRGAGPQGLAGMG---EVQYRGDTLIMRPMLALEKAEIVAYAEEEMLQWVEDES 196

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N  + F+R  +R  +    +  L  +  K      +     A           +      
Sbjct: 197 NQQNSFDRNFLRNEI----IPHLLARWPKLTKTVGRSAELCAEQSALVSDSAQKYFEDCK 252

Query: 254 QDILNIDSTLLFYLLRVSAAIC------GGQISLPGYRSMERVMLFLKSGKRGC----VS 303
           +  L +D   L  L     A+             P     ++V+  LK+           
Sbjct: 253 RTDLRLDGQQLAALSLPWQAMVIRAWFRAQGELSPSKAQTDQVLAMLKAKHDATPEVNFK 312

Query: 304 IGRVVIDRRANFLWITRAVRNLPT-LILYPEETT 336
            GR VI    +  W+  A   +P  L L P +  
Sbjct: 313 WGR-VIRFDQDLYWVVNATHEVPQNLKLVPNQNI 345


>gi|218130045|ref|ZP_03458849.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697]
 gi|217987765|gb|EEC54092.1| hypothetical protein BACEGG_01630 [Bacteroides eggerthii DSM 20697]
          Length = 426

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 46/329 (13%)

Query: 7   ESVRFFV--RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  ++  + L  P   +++A+SGG+DS+ LL  L ++            A   +  LR
Sbjct: 4   ERVAQYINQKRLFMPTDKVIIALSGGADSVALLCLLQTL-------GYNCEAAHCNFHLR 56

Query: 64  E-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
              +  +  +V  +C++ ++   +V +       +    +  AARE RY    E  +   
Sbjct: 57  GKESDRDEAFVCQLCAKRQVPLHIVHFNTVRTAEERHISIEMAARELRYEWFEEIRRKSG 116

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A +I  AH  DD +ET+ +   R     G+         +   N  I RP L   R++I 
Sbjct: 117 ANVIAVAHHRDDSVETLLLNLIRGTGINGL-------RGIRPKNGHIVRPLLCLDRKEII 169

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVN 231
           ++L +    +  D +N  D + R ++R       + +      +++   +   ++ +   
Sbjct: 170 NYLNRTGQDYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESIFNTAEHLSEVSIIYK 229

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMER 289
            ++     +  T     I A+ Q+      TLLF +L              G+    +  
Sbjct: 230 KSIEEATKRVQTTEGICIDALMQET--APETLLFEIL-----------YPLGFNAAQIRD 276

Query: 290 VMLFL--KSGKRGCVSIGRVVIDRRANFL 316
           +   L  + GK       RVV DR+   +
Sbjct: 277 IYRALEGQPGKTFSSEHWRVVKDRKYLLI 305


>gi|158319482|ref|YP_001511989.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus oremlandii OhILAs]
 gi|158139681|gb|ABW17993.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus oremlandii OhILAs]
          Length = 463

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 62/300 (20%), Positives = 124/300 (41%), Gaps = 24/300 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76
           +   I+VA+SGG DS+ LL  L+ +   R    ++     ++H  R   A+ + +YV+++
Sbjct: 17  WGDRIIVAISGGPDSVCLLHNLYQL---REEYNLELYGAHLNHNFRGIDAQVDAQYVANL 73

Query: 77  CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  L I   +    V     +       A R  RY    E A+ + A  I  AH  +DQ 
Sbjct: 74  CEELNILCFIKSMDVPQYAKEKGLSSEEAGRILRYEFFDEIAEQVGANKIAVAHNENDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV MR  R    +G+       T ++     I RP L   R+ I  +  +  +S   D 
Sbjct: 134 ETVLMRLLRGTGLQGL-------TAIHINRGRIIRPLLGVDRKSIEEYCEKYQLSPRIDK 186

Query: 193 SNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           +N +  ++R ++R  +            +  L    +  ++    +      +    +T 
Sbjct: 187 TNLESIYKRNKIRLELIPYLEEHYNPNIIENLVRTAEILKEDFDFIEEQSREIYSGLMTN 246

Query: 245 HMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
                + +  + + N+   +   ++R++A    G+  +  Y+ ++ V+  ++ G  G  +
Sbjct: 247 QNEFSLTLPLEAIRNLHPAIKSRVIRLAAEQLLGRQEILEYKHVQNVLDLVEKGATGKKT 306


>gi|290894273|ref|ZP_06557240.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
           J2-071]
 gi|290556157|gb|EFD89704.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
           J2-071]
          Length = 648

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 106/266 (39%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A +E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSDLVSKEAISVAHLNHHLRENAANEQNVVETFC 76

Query: 78  SRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   +       +    Q G+   AR  RY    +     N   +  AH  DDQ+E
Sbjct: 77  ERHGIPFYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I ++  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKREVRGGYAI-RPFLPITKAEIIAYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  ++Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPSVYAHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +     N  + L    + +  
Sbjct: 254 KQTTLLLTSFKNEANPLQRRAIHLLL 279


>gi|315640556|ref|ZP_07895664.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus italicus DSM 15952]
 gi|315483760|gb|EFU74248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Enterococcus italicus DSM 15952]
          Length = 457

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 153/370 (41%), Gaps = 34/370 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            +R F         +L+AVS G DSM LL  L S ++D      + + + V+H LR  ++
Sbjct: 11  QIRQFANQ-----DVLLAVSTGVDSMVLLDLLISSVTDIQ----RIAVVHVNHGLRPESE 61

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E  +++  C   ++     +W  +   + + A AR+ RY    +        +++TAH 
Sbjct: 62  KEACFINAYCKEHQLDFFQANWTPT--SSNIEANARQFRYDFFKKIMNEQGYKVLLTAHH 119

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLET+ M++ RD       L G+  +  +  N  + RP L   ++ +  +  +R ++
Sbjct: 120 RDDQLETMLMKAIRDGQL--TALKGIVASQPFA-NGQLVRPLLPYDKQTLYDYAKRRELT 176

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           + ED +N D  + R R+R+ V  +         + FQ +  +V +  A L+ + L    +
Sbjct: 177 YFEDETNQDSLYFRNRMRQQVVPLLKKEHPQVTEHFQQIAKQVEDNEA-LLEEVLWEQEK 235

Query: 248 SIIAISQDILNID--------STLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLKSGK 298
            +   +    ++D          +  YLL  +A I     ++    + + + +  L   K
Sbjct: 236 GMFKKTTTGWSLDLSLFQKRSPLVKKYLLEKAAQIVRSTGTVALSQKQINQTLTLLDEHK 295

Query: 299 RG--CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT-------VWDGRYQFQNLSD 349
                      VI R    L + +         +   E T        W G +Q   + +
Sbjct: 296 SQWLLNIAHGWVIRRAYQTLVLEKKPEQQERQAVTLMEGTQLYLSDHQWIGLFQ-SPVDE 354

Query: 350 SLIQIGPQSY 359
           SL+    Q++
Sbjct: 355 SLLPPKVQTW 364


>gi|317476539|ref|ZP_07935786.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA]
 gi|316907282|gb|EFV28989.1| tRNA(Ile)-lysidine synthetase [Bacteroides eggerthii 1_2_48FAA]
          Length = 370

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 46/329 (13%)

Query: 7   ESVRFFV--RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  ++  + L  P   +++A+SGG+DS+ LL  L ++            A   +  LR
Sbjct: 4   ERVAQYINQKRLFMPTDKVIIALSGGADSVALLCLLQTL-------GYNCEAAHCNFHLR 56

Query: 64  E-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
              +  +  +V  +C++ ++   +V +       +    +  AARE RY    E  +   
Sbjct: 57  GKESDRDEAFVCQLCAKRQVPLHIVHFNTVRTAEERHISIEMAARELRYEWFEEIRRKSG 116

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A +I  AH  DD +ET+ +   R     G+         +   N  I RP L   R++I 
Sbjct: 117 ANVIAVAHHRDDSVETLLLNLIRGTGINGL-------RGIRPKNGHIVRPLLCLDRKEII 169

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVN 231
           ++L +    +  D +N  D + R ++R       + +      +++   +   ++ +   
Sbjct: 170 NYLNRTGQDYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESIFNTAEHLSEVSIIYK 229

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMER 289
            ++     +  T     I A+ Q+      TLLF +L              G+    +  
Sbjct: 230 KSIEEATKRVQTTEGICIDALMQET--APETLLFEIL-----------YPLGFNAAQIRD 276

Query: 290 VMLFL--KSGKRGCVSIGRVVIDRRANFL 316
           +   L  + GK       RVV DR+   +
Sbjct: 277 IYRALEGQPGKTFSSEHWRVVKDRKYLLI 305


>gi|90020884|ref|YP_526711.1| GntR family transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89950484|gb|ABD80499.1| transcriptional regulator, GntR family [Saccharophagus degradans
           2-40]
          Length = 429

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/316 (24%), Positives = 134/316 (42%), Gaps = 26/316 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + +L   A + VA SGG DS  LL AL  +        +K  A+ V+H L   A +  R 
Sbjct: 12  ITALSPQACVWVAFSGGLDSTVLLHALSVL-------GVKCHAVHVNHGLSINADNWQRQ 64

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            S   S+  IA + V    S    G+  AAR ARY  I        + +++T H  DDQ+
Sbjct: 65  CSVFASQREIAFTAVKVIVSAEGRGIEEAARVARYNAIENLLAP--SDVLLTGHHRDDQI 122

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET ++R  R    +G+G      ++   +   + RP L   R+ +  + LQ+ ++W ED 
Sbjct: 123 ETFFLRLMRGAGLRGLGAMRRTRSLSQAI---LVRPLLNISRQSLHEYALQQGLTWIEDE 179

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN D  ++R  +R+      L A + +++K  +  V+   A   L+ +Y    +    + 
Sbjct: 180 SNLDTHYDRNLLRQTFVP-QLKARWPQVEKNVETTVQHLQAAEDLLQEYAAADLALCESR 238

Query: 253 SQDILN---------IDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGC 301
            + +             +    ++LR   A  G    LP    M  +  ++  K      
Sbjct: 239 QERLGCSIALNPMRAFSTERTSHILRSWLASLG--YKLPDTARMVELHKIIAAKDDAAPL 296

Query: 302 VSIGRVVIDRRANFLW 317
           ++IG   + R    L+
Sbjct: 297 LNIGDYSLCRFQQRLY 312


>gi|225375860|ref|ZP_03753081.1| hypothetical protein ROSEINA2194_01492 [Roseburia inulinivorans DSM
           16841]
 gi|225212295|gb|EEG94649.1| hypothetical protein ROSEINA2194_01492 [Roseburia inulinivorans DSM
           16841]
          Length = 487

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 139/369 (37%), Gaps = 38/369 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +L  VSGG+DS+ LL+ L  +     F      A+ V+H +R E ++ +  +V ++C   
Sbjct: 21  VLAGVSGGADSVCLLLMLEQLQKKTDFL---LEAVHVEHGIRGEESRKDAAFVKNLCQDH 77

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT------LIMTAHTFDD 130
            I   + S +      K   GL  AAR  RY    + A+++          +  AH  +D
Sbjct: 78  GIRCHIFSVEVPLFAEKHGLGLEEAARILRYDCYKKAAESVKKEFPEKKIKLALAHHAED 137

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV  +  R     G  L GM       +   + RP L   RE+I +FL +   S+C 
Sbjct: 138 NAETVLFQMVRGSGLDG--LCGMSRRRDEGI-YELIRPLLAQPREEIEAFLRECGQSYCM 194

Query: 191 DPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           D +N D  + R R+R  V           +  +       Q++R  +N     +   Y+ 
Sbjct: 195 DETNLDTEYSRNRIRHQVLPELKQINGQAVAHINQSAALLQEMRDFLNEEAEHIREMYVV 254

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGKRGC 301
                I   S         +   +L  +     G       + +E  R + F + G+   
Sbjct: 255 EKSDGIQLYSGVWEECHEVVQREVLHKAIGQVAGSKKDITRKHVESVRNLYFSQVGRYVE 314

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
           +   +V+ +R  + + + +                  D  +  +   +SL ++      +
Sbjct: 315 LP-YQVLAERNYHGILLRKETEKKRA-----------DNTFLIEIPKESLQKVFDGETLE 362

Query: 362 ADVPSGIPP 370
            +VP G   
Sbjct: 363 LEVPGGRVR 371


>gi|237745448|ref|ZP_04575928.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS]
 gi|229376799|gb|EEO26890.1| MesJ cell cycle protein [Oxalobacter formigenes HOxBLS]
          Length = 468

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 126/310 (40%), Gaps = 16/310 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG DS  LL   H   ++++   I+  A  + H L   A   + +    C    
Sbjct: 39  IAIAYSGGLDSTVLLHCAHRFAAEKN---IRLFAFHIHHGLNRKADAWLNHCEAACMEQG 95

Query: 82  IAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I       +  +    G+ A AR  RYA + E  +    TL++TAH  DDQ+ETV M   
Sbjct: 96  IRFESRKVRVDRGSGDGIEAEARSKRYAALGEMCRKNEVTLLLTAHHEDDQVETVLMHLM 155

Query: 141 RDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R     G+           +L D   W+ RPFL   RE++ S+   +N+S  ED SN D 
Sbjct: 156 RGTGIAGLAGMDSVTQAPELLGDTKTWVGRPFLSLSREELASWAKAKNLSCVEDDSNNDT 215

Query: 198 RFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           ++ R  +R  +  +          ++ +        N  +     + L +   S  A+  
Sbjct: 216 KYTRNAIRHRLIPVLSDMFPGFGNRLSRMAQHARSANKVLNETGRQDLEMCRISQNALDL 275

Query: 255 -DILNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGCVSIGRVVID 310
                +    +  L R    +    I +P    YR  ++ ++  ++  +  + +   V+ 
Sbjct: 276 VKAGKLGPDRMDNLFR--CWLIENGIRIPSASWYRQAKKQIVDSRADAQVDLPLKGYVLR 333

Query: 311 RRANFLWITR 320
           +  N +++ +
Sbjct: 334 KYRNRVFLEK 343


>gi|225571157|ref|ZP_03780155.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM
           15053]
 gi|225159988|gb|EEG72607.1| hypothetical protein CLOHYLEM_07245 [Clostridium hylemonae DSM
           15053]
          Length = 477

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 137/332 (41%), Gaps = 37/332 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRY 72
             L     ++  VSGG+DS+ LL  L  +  +  F     +A+ V H LR   A  + +Y
Sbjct: 34  HMLQQSDRVIAGVSGGADSICLLFVLLELKKEIGF---SVTAVHVHHGLRAETADRDAQY 90

Query: 73  VSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V  +C   ++     H  V    ++ +  +  A RE R A   E  +    T I  AH  
Sbjct: 91  VEKICREQKVELLVYHEDVKTYAAEHKLTVEEAGREVRRAAFKEVLRKKQGTKIALAHHQ 150

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D  ET+ +   R    KGMG       I     +WI  P L  +R+++ S+L +R IS+
Sbjct: 151 NDNAETLLLNLCRGTGLKGMG------GIPPVEGVWI-HPLLCLKRKEVESYLEERGISY 203

Query: 189 CEDPSNTDDRFERVRVRRFV-----RDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPK 240
           C D +N++D + R ++R  V     ++I+  A   +    ++ + L   V++  A     
Sbjct: 204 CTDETNSEDSYARNKIRNQVIPYLEKEINAQASEHMAETARQMRLLGAYVDSQAAEQEKA 263

Query: 241 YLTVHMRSI-IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL----- 294
            +        + + ++   +   L  Y++        G       +++E V + L     
Sbjct: 264 CVDTDGAGRSLLLKKEFARVPEVLRPYVIHRILCRTAG-----RSKNIEAVHVRLITELM 318

Query: 295 --KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
             + G+R C+  G   +      +  T+  R 
Sbjct: 319 HRQVGRRLCLPYGVTAVRCYE-GIRFTKEGRQ 349


>gi|254832460|ref|ZP_05237115.1| hypothetical protein Lmon1_13981 [Listeria monocytogenes 10403S]
          Length = 648

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 105/266 (39%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A  E R V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSDLVPKEAISVAHLNHQLRENAAKEQRVVETFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   +            Q GL   AR  RY    +     N   ++ AH  DDQ+E
Sbjct: 77  ERQGIPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMTEKNINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +     N  + L    + +  
Sbjct: 254 KQTTLLLSSFKNEANPLQRRAIHLLL 279


>gi|254481735|ref|ZP_05094978.1| PP-loop family protein [marine gamma proteobacterium HTCC2148]
 gi|214037864|gb|EEB78528.1| PP-loop family protein [marine gamma proteobacterium HTCC2148]
          Length = 451

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 69/362 (19%), Positives = 131/362 (36%), Gaps = 26/362 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H  VA SGG DS  LL  ++S            +A+ ++H L+  A D   + + +C  L
Sbjct: 22  HWYVAYSGGVDSTALLQLINSWCKANGQAP-PLTALHINHGLQAQAADWENHCAWICRFL 80

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +    ++        G+ +AAR+ARYA   E  +     ++   H  DDQ+ET ++R  
Sbjct: 81  DVPFLALNVDVDPDGRGVESAARQARYARFEEQLEE--GEVLFFGHHQDDQVETFFLRLL 138

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+        +       + RP L   R  + +++  + + + EDPSN D   +
Sbjct: 139 RGAGVDGLAAMPRQRGL---GKGLLLRPLLDYSRAQLEAYVEAQGLRYIEDPSNQDVSLD 195

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSIIA-----I 252
           R  +R+ V    L  L  +   ++    +    +A         +T+      A     +
Sbjct: 196 RNYLRQDV----LPVLASRWPGYRQTITRAAGHLASVSGARESAVTIPQTCFSALGDPGL 251

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS---GKRGCVSIGRVVI 309
              +L +D  +   L+     +  G    P    ++  +  L++     R  ++ G   +
Sbjct: 252 PGGVLKVDDQVQAALVLR-GWLKSGGYQAPDQSVLDEFLRQLRASTGDARPQLNSGSYRL 310

Query: 310 DRRANFLWITRAVRNL--PTLILYPEETTVWD--GRYQFQNLSDSLIQIGPQSYRKADVP 365
            R    +++           L + P         GR   +      I +           
Sbjct: 311 QRYKEAIYLLPEDPGPVDQELAIAPGGVIEIPGVGRISLRRTESEGIWLAADESLSLQWR 370

Query: 366 SG 367
            G
Sbjct: 371 DG 372


>gi|330830699|ref|YP_004393651.1| tRNA(Ile)-lysidine synthetase [Aeromonas veronii B565]
 gi|328805835|gb|AEB51034.1| tRNA(Ile)-lysidine synthetase [Aeromonas veronii B565]
          Length = 452

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 17/304 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL+       +     +  SA+ V H L   A + V +   VC +L 
Sbjct: 22  LLVAFSGGLDSTLLLVLAAQYAREHG---LPLSALHVHHGLSPHADEWVAHCEAVCQQLA 78

Query: 82  IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   V      +     L A AR ARY  ++   +      ++TAH  DDQLET+ +  +
Sbjct: 79  VELLVERVTLIRGNGESLEAQARTARYQRLTARMRE--GEWLLTAHHQDDQLETLLLALK 136

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G  L+G+  +  +   L + RP L   R ++          W ED SN +  ++
Sbjct: 137 RGAGLRG--LAGILPSQPFAGGL-LLRPLLDMSRAELADAAASLPFGWVEDESNQEVSYD 193

Query: 201 RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R  +R+ +         A+     +   L  +    +  L      +           + 
Sbjct: 194 RNFLRQTLIPQLKARWPAMAQTAARSMALCAEQEALLEELAESDWQLAGEGEALHIGPLH 253

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRAN 314
            +  T    LLR      GG+  +P    + R+       +      ++ GR    R   
Sbjct: 254 ALSPTRRNNLLRYWIRRQGGE--MPSREQLARLWQEVALARGDANPRLNWGRQSCRRFQE 311

Query: 315 FLWI 318
            L++
Sbjct: 312 RLYL 315


>gi|282850013|ref|ZP_06259395.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745]
 gi|282580202|gb|EFB85603.1| tRNA(Ile)-lysidine synthetase [Veillonella parvula ATCC 17745]
          Length = 332

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 132/307 (42%), Gaps = 16/307 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA SGG DSM LL  L  + + R     +     VDHC+R  +KDEV ++ +    L
Sbjct: 25  RILVACSGGPDSMALLHLLQDIATHR-HTVYELGVAIVDHCIRLESKDEVLWLRNQADVL 83

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +      +   K     +       R+ RY  ++  A++     I  AH  DDQ E++ 
Sbjct: 84  GLPFYTAVFDVPKLSQAQKLSEETIGRQVRYQWLTGIAQSEGYDYIAVAHHKDDQAESIL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R     G  L+GM   +  D  + + RP L   +E++  +L +++IS+C D +N D
Sbjct: 144 AHLIRGTGLNG--LTGMA-VVSNDYIVPVVRPLLDVTKEELLLYLKEKDISYCIDSTNED 200

Query: 197 DRFERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            R++R R+R         +  I + A+       ++    ++N   M   + +T+     
Sbjct: 201 VRYQRNRIRHRIIPELKAINPIVIDAIVRLGASVREDISLISNLTDMAFDELVTISDEGA 260

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
               + +      +   L +   +I   +I L      E+++  + +G++   +I  + +
Sbjct: 261 FISRRGLRKKPLAIQRRLWQRLVSIFDPEIKL-TTAHQEQLLDIVNTGEKKTFNIKSIKV 319

Query: 310 DRRANFL 316
             + + +
Sbjct: 320 SAQCDTI 326


>gi|332307488|ref|YP_004435339.1| tRNA(Ile)-lysidine synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174817|gb|AEE24071.1| tRNA(Ile)-lysidine synthetase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 466

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 81/316 (25%), Positives = 132/316 (41%), Gaps = 17/316 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           SL+   H +VA S G DS  LL AL  +   +       SAI + H L E A    ++ +
Sbjct: 17  SLLPSRHFVVAYSAGIDSHVLLHALWRLQQVKKTP-FTLSAIYIHHGLSENADLWQQHCA 75

Query: 75  DVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           DVC  L I  +            G+ A AREARYA + E A T   ++IM A   DDQLE
Sbjct: 76  DVCDALNIEFASAKVTLDFSNGKGIEAQAREARYAKLVEMAPT--DSVIMLAQHQDDQLE 133

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTI----LYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           TV ++ +R    KG+   G   T         N+   RP L   ++ I+ +  ++++ W 
Sbjct: 134 TVLLQLKRGAGPKGLSGMGTYFTSDKLGASQQNVHFFRPLLDISQQQIQHYAKEQSLVWQ 193

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           ED SN +  FER  +RR V  + L+  +  + +      K+      L+ + +T+     
Sbjct: 194 EDESNQNTDFERNFIRRDVAPL-LNERWPHIAQSVSRSAKLCAEQQALLEE-VTLEKLQP 251

Query: 250 IAISQDILNIDSTL----LFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCV 302
           +    + L +   L     + L  V   +    I  P    + ++   +L         +
Sbjct: 252 LRKPNNTLCVKGLLALTEAWRLQVVRLWLDEQNILSPSQAILTQLSNELLLSAKDANPII 311

Query: 303 SIGRVVIDRRANFLWI 318
                   R  + L++
Sbjct: 312 QWQSWQFRRFEDALYV 327


>gi|262276510|ref|ZP_06054319.1| tRNA(Ile)-lysidine synthetase [Grimontia hollisae CIP 101886]
 gi|262220318|gb|EEY71634.1| tRNA(Ile)-lysidine synthetase [Grimontia hollisae CIP 101886]
          Length = 440

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 136/353 (38%), Gaps = 31/353 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             P  I++A SGG DS  +L  L +        + ++  I + H L   A + +      
Sbjct: 15  PQPRQIVLAFSGGVDSRVMLDLLATYRD--IHPQHRYLVIHIHHGLSPNADEWMMRCEAW 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +    A   +    ++ +  L  AAREARY  I  H +  N  L++T    DDQ ET  
Sbjct: 73  ATEADFAFKGIRVSLNQREGNLENAAREARYQAILNHVE--NDALVLTGQHADDQAETFL 130

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R     G+    +   + + +   + RP L   R  I  +   + +SW ED SN D
Sbjct: 131 LALKRGSGPAGLAAMPVTRPLGHAV---LCRPLLSITRAVIERYAEDQGLSWLEDESNLD 187

Query: 197 DRFERVRVRRF---VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
            RF+R  +R+    +       +   + +      +    +  L+  Y    M +   +S
Sbjct: 188 CRFDRNFIRQQWLPMAQERWPGMVKAINRTARHCAEQEALLDELLSGYDHQVMLADGGLS 247

Query: 254 QDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
              L     N+ + +    L+ +A +    + +   R ++  ++         + +G V 
Sbjct: 248 ISALMALSGNMQTAMTRRWLKKTAGVVPSSVQM---RELQVSVIESAQDANPSLQLGPVD 304

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF---QNLSDSLIQIGPQS 358
           + R    L++    +++            W G+ +      L D L +I  Q+
Sbjct: 305 VRRYQGTLYVVPPHQDVSA----------WTGQLEIGETLGLPDGLGEIALQT 347


>gi|254228405|ref|ZP_04921831.1| PP-loop family [Vibrio sp. Ex25]
 gi|151938993|gb|EDN57825.1| PP-loop family [Vibrio sp. Ex25]
          Length = 449

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 131/322 (40%), Gaps = 18/322 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       +++A SGG DS  LL  L       S   I+  A+ V H L   A D     
Sbjct: 27  RYYQSGTKVVLAFSGGVDSRLLLELLSRYQQAHS---IECHAVYVHHGLSSNADDWADKC 83

Query: 74  SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                ++ I+ S+     +      +   AREARY  ++++ +     +++T    DDQL
Sbjct: 84  LLWAKQVGISCSIELVSLDISNGESIELLAREARYQALTKYIQE--GDILLTGQHADDQL 141

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M +++ +     + RP L  +R+ I     +  + W ED 
Sbjct: 142 ETFLLALKRGSGPKG--LSSMAESMPFSSG-SLVRPLLTIKRKTIEDAATKLGLEWVEDE 198

Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           SN D R++R  +R  V         +++  +++   L  +    +  L+       +++ 
Sbjct: 199 SNQDTRYDRNFLRHCVIPELSGRWPSIHQAVQRSASLCAQQEALLDELLSAVFERALQTD 258

Query: 250 IAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305
           +++S + L   S L    L+R+  A      S+P    +  +       +      + + 
Sbjct: 259 LSLSIEELAKHSELARARLIRMWLAKL--NTSMPTQVQLNLIWNEVALAQQDANPKLQLK 316

Query: 306 RVVIDRRANFLWITRAVRNLPT 327
           +  + R  N L+    + ++  
Sbjct: 317 QGEVRRFRNRLYWVTEIADVTE 338


>gi|188533056|ref|YP_001906853.1| tRNA(Ile)-lysidine synthase [Erwinia tasmaniensis Et1/99]
 gi|188028098|emb|CAO95955.1| tRNA(Ile)-lysidine synthase [Erwinia tasmaniensis Et1/99]
          Length = 433

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 143/358 (39%), Gaps = 26/358 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++ +  +SL     +L+A SGG DS  LL  L  +   R   +++  A+ + H L   
Sbjct: 1   MSAIAYLEQSLAAEHAVLLAYSGGLDSSVLLHQLVQLRERR--PQLRLRAVHIHHGLNPL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A     +    C+R ++   V+  +    + G+ AAAR+ARY  +  HA+      ++TA
Sbjct: 59  ADGWAAHCQQQCARWQVPLMVIRVQVDAREGGIEAAARQARYRAL--HAQLEAGETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+             +L   RP L   R+ +  +  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGDRRHL---RPLLAQSRQQLECWAHRHQ 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           + W ED SN D R++R  +R  V  +    L  +   F     +              + 
Sbjct: 174 LDWIEDDSNQDARYDRNFLRLRVMPL----LNQRWPHFASAVARSAQLCGEQEHLLDELL 229

Query: 246 MRSIIAISQD--ILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKS 296
             S+ A+  +   LN    L    +R  A     I     S+P   +++R+       ++
Sbjct: 230 SESLDALVDESGALNFTPLLAMSDVRRFALLRRWIARQHGSMPSRDALQRLWQEVACSRA 289

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
                + IGR  + R  + L+    ++ L +  L       W   ++   L D L ++
Sbjct: 290 DADPRLRIGRSEVRRFRDRLYWLSPLQPLGSCRLA------WPAPWRPLTLPDDLGEL 341


>gi|153835638|ref|ZP_01988305.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio harveyi
           HY01]
 gi|148867745|gb|EDL67002.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Vibrio harveyi
           HY01]
          Length = 448

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 133/329 (40%), Gaps = 22/329 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETA 66
           R       I++A SGG DS  LL  L       S           K  A+ V H L   A
Sbjct: 14  RYHQPNTKIVLAFSGGVDSRLLLELLSRYQQAYSIDNQLTDSHSFKCHAVYVHHGLSSNA 73

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            +          +  I +SV     ++     +   AREARY  +++H ++    L++T 
Sbjct: 74  DEWADKCLVWAEQAGITYSVERVSLDTNSGESIELLAREARYQALAKHIQS--GDLLLTG 131

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ+ET  +  +R    KG  LS M +++ +   + + RP L  +RE I +   ++ 
Sbjct: 132 QHADDQVETFLLALKRGSGPKG--LSSMAESMPFAGGI-LVRPLLAIKREQIEAVAREQK 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           + W ED SN D R++R  +R  +         +++  +++   L  +    +  L+    
Sbjct: 189 LDWVEDESNQDIRYDRNFLRHRIVPELSERWPSIHQAVQRSASLCAQQEALLDELLSAVF 248

Query: 243 TVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298
              ++S  ++S + L   S L    L+R+  A      ++P    +  +       +   
Sbjct: 249 ERALQSDFSLSIEELATHSELARARLVRMWLAKL--NANMPTQVQLNLIWNEVALAQQDA 306

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPT 327
              + + +  + R  N L+      ++ T
Sbjct: 307 NPKLQLKQGEVRRFQNRLYWVTETVDVTT 335


>gi|126701186|ref|YP_001090083.1| putative ATPase [Clostridium difficile 630]
 gi|254977186|ref|ZP_05273658.1| putative ATPase [Clostridium difficile QCD-66c26]
 gi|255094515|ref|ZP_05323993.1| putative ATPase [Clostridium difficile CIP 107932]
 gi|255308593|ref|ZP_05352764.1| putative ATPase [Clostridium difficile ATCC 43255]
 gi|255316267|ref|ZP_05357850.1| putative ATPase [Clostridium difficile QCD-76w55]
 gi|255518928|ref|ZP_05386604.1| putative ATPase [Clostridium difficile QCD-97b34]
 gi|255652107|ref|ZP_05399009.1| putative ATPase [Clostridium difficile QCD-37x79]
 gi|260685080|ref|YP_003216365.1| putative ATPase [Clostridium difficile CD196]
 gi|260688738|ref|YP_003219872.1| putative ATPase [Clostridium difficile R20291]
 gi|306521841|ref|ZP_07408188.1| putative ATPase [Clostridium difficile QCD-32g58]
 gi|122973554|sp|Q181G3|TILS_CLOD6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|115252623|emb|CAJ70466.1| transfer RNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Clostridium
           difficile]
 gi|260211243|emb|CBA66771.1| putative ATPase [Clostridium difficile CD196]
 gi|260214755|emb|CBE07452.1| putative ATPase [Clostridium difficile R20291]
          Length = 462

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 25/320 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
           +     I++ +SGG DS+ LL  L+ +  D     I+  A  ++H +R   A+ +  YVS
Sbjct: 16  IQKGDKIVLGLSGGPDSVCLLHVLNRLKKD---FNIEIYAAHLNHQIRGIEAQKDALYVS 72

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +C  + I   V S    K        L   AR+ RY +  E    I A  I   H  +D
Sbjct: 73  KLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLND 132

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV MR  R    KG+        I Y  +  I RP L   R +I  +    N++   
Sbjct: 133 QAETVMMRIMRGTGLKGL------KGIDYIRDNCIIRPILDVERNEIEEYCEAYNLNPRI 186

Query: 191 DPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           D +N ++ + R ++R  +            + ++       +     +         +  
Sbjct: 187 DKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVS 246

Query: 243 TVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RG 300
            +  +  + I+  D + +   +   +LR S     G  +    R +E +M    + K   
Sbjct: 247 NIKEKGFVEINLDDFVCLHDAIKVRVLRNSIKHILGDTNFVDQRHIEDIMSLEDNSKVNK 306

Query: 301 CVSIGRVV-IDRRANFLWIT 319
            +++ R + + R+ + + +T
Sbjct: 307 MLTLPRNIFVYRKKDSIILT 326


>gi|322381177|ref|ZP_08055180.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154753|gb|EFX47024.1| tRNAile lysidine synthetase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 479

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 74/319 (23%), Positives = 130/319 (40%), Gaps = 29/319 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++VAVSGG DS+ LL  L+ +  ++ +   K  A  V+H  R E + +E +YV    S L
Sbjct: 23  VVVAVSGGPDSIALLHMLYRLSDEQGW---KVIAAHVNHQFRKEESAEEAKYVMSFASGL 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V    V     +       AARE RY  + + A   NA  I  AH  DDQ ETV 
Sbjct: 80  GIPCEVGVIDVPAYIRETSLNPQVAAREKRYEFLHKIANVYNADKIALAHHADDQAETVL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G+    +      + N+ + RP LR  + ++ S+  +  + +  D SN  
Sbjct: 140 MRIVRGTGLSGLTGIPIKRK---EKNVELVRPMLRIYKNEVISYCHEHQLHFFRDSSNDS 196

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAIS 253
            ++ R +VR  V    L  L    +   +   ++   V      + +     M S++   
Sbjct: 197 RKYFRNQVRLDV----LPFLSSYNEHLPEALNRLAEMVKGEDDYMDEQARREMSSLVKCQ 252

Query: 254 QD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
           +D         L++   L   ++++       Q     + ++E++ L +       V + 
Sbjct: 253 KDSYSFGRTAFLSLHLALQRRVIKLILNYLALQAEKIDFITVEQIRLAILQDAHSNVRLN 312

Query: 306 ---RVVIDRRANFLWITRA 321
               ++  R    + I + 
Sbjct: 313 LPEELLFIREYEAIRIQKE 331


>gi|261380143|ref|ZP_05984716.1| tRNA(Ile)-lysidine synthase [Neisseria subflava NJ9703]
 gi|284796980|gb|EFC52327.1| tRNA(Ile)-lysidine synthase [Neisseria subflava NJ9703]
          Length = 441

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 133/316 (42%), Gaps = 32/316 (10%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS+ LL  LH +   R F      A+ V H L   A    ++  D C RL +A
Sbjct: 28  VGLSGGLDSVVLLHLLHRM---REFRHFDLRAVHVHHGLSTNADSWAKFCQDYCQRLDVA 84

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V          GL AAAR ARY   S+  + I    I+ AH  +DQ+ET  + + R  
Sbjct: 85  LRVCRVNVQNQGKGLEAAARAARYQAFSDGLRKI----IVLAHHHNDQIETFMLSAVRGG 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +GM    +   +  ++ +W  RP L   R+++  +  Q  +S+ ED SN D  + R  
Sbjct: 141 GLRGMAAMPVWRNLNEEIQIW--RPLLAFSRQELAEYAQQWGLSFVEDESNEDSGYLRNW 198

Query: 204 VRRFVRDIDLHALYLKMKKFQD--------LRVKVNNAVAMLIPKYLTVHMRSIIAIS-- 253
           +R       L     ++  F+         L+  +     ++  +Y  +    I +IS  
Sbjct: 199 MRNQ----ALPQWQQRIPNFEQQICANVRLLQEDLQLLDELIESEYQRISPNGIFSISLW 254

Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVID 310
            Q    +   LL+Y LR          SLP Y S+      L++  +  +++  G +V  
Sbjct: 255 RQCTPLLRRRLLWYFLRKQT------ESLPSYHSIADFARVLETADQAQLNLPDGELVAY 308

Query: 311 RRANFLWITRAVRNLP 326
           R   F+      + LP
Sbjct: 309 RDKLFVCQESEFQKLP 324


>gi|315023607|gb|EFT36611.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer RA-YM]
 gi|325336103|gb|ADZ12377.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Riemerella anatipestifer RA-GD]
          Length = 427

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 121/324 (37%), Gaps = 33/324 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
             L+AVSGG+DSM L   +  +         K     +++ LR E +  +   V + C +
Sbjct: 22  QFLLAVSGGADSMVLAHLMKQI-------DAKIEIAHINYKLRSEDSDKDAALVQEFCEK 74

Query: 80  LRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             I      VS K+ KP   +   ARE RY       K  + + ++TAH  +DQLET  +
Sbjct: 75  HHILFHCYTVSEKDQKPSGSIQLWARELRYQFFRNIMKNRSLSHLVTAHHLNDQLETFII 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    KG+         + +    I RP L   +E+I  F    +I++ ED SN   
Sbjct: 135 NLSRGSGIKGLA-------GIPNNENEILRPLLDFSKEEIYHFAEAHSIAFREDKSNQKQ 187

Query: 198 RFERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
            + R ++R         +    L      +    + +  +N  +   I ++        I
Sbjct: 188 DYLRNKIRHSVVPNLEEINPDFLDNFRKSIDFLSEAKYFINQQIEYKIKEFSISTECKTI 247

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
                +    S + F +L         +IS          M   ++GK    +  + +I+
Sbjct: 248 IDRHALEKESSFIQFEILNRFGFSNKAEIS---------KMFTAETGKSFYSNGYQCLIN 298

Query: 311 RRANFLWITRAVRNLPTLILYPEE 334
           R    +     + N    I  P E
Sbjct: 299 REQFIISKKEPISNNDEDITLPSE 322


>gi|313206452|ref|YP_004045629.1| tRNA(ile)-lysidine synthetase [Riemerella anatipestifer DSM 15868]
 gi|312445768|gb|ADQ82123.1| tRNA(Ile)-lysidine synthetase [Riemerella anatipestifer DSM 15868]
          Length = 424

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 121/324 (37%), Gaps = 33/324 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
             L+AVSGG+DSM L   +  +         K     +++ LR E +  +   V + C +
Sbjct: 19  QFLLAVSGGADSMVLAHLMKQI-------DAKIEIAHINYKLRSEDSDKDAALVQEFCEK 71

Query: 80  LRI--AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             I      VS K+ KP   +   ARE RY       K  + + ++TAH  +DQLET  +
Sbjct: 72  HHILFHCYTVSEKDQKPSGSIQLWARELRYQFFRNIMKNRSLSHLVTAHHLNDQLETFII 131

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    KG+         + +    I RP L   +E+I  F    +I++ ED SN   
Sbjct: 132 NLSRGSGIKGLA-------GIPNNENEILRPLLDFSKEEIYHFAEAHSIAFREDKSNQKQ 184

Query: 198 RFERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
            + R ++R         +    L      +    + +  +N  +   I ++        I
Sbjct: 185 DYLRNKIRHSVVPNLEEINPDFLDNFRKSIDFLSEAKYFINQQIEYKIKEFSISTECKTI 244

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
                +    S + F +L         +IS          M   ++GK    +  + +I+
Sbjct: 245 IDRHALEKESSFIQFEILNRFGFSNKAEIS---------KMFTAETGKSFYSNGYQCLIN 295

Query: 311 RRANFLWITRAVRNLPTLILYPEE 334
           R    +     + N    I  P E
Sbjct: 296 REQFIISKKEPISNNDEDITLPSE 319


>gi|315301121|ref|ZP_07872408.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596]
 gi|313630510|gb|EFR98356.1| bifunctional protein TilS/hprT [Listeria ivanovii FSL F6-596]
          Length = 485

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 126/323 (39%), Gaps = 22/323 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LVAVSGG DS+ LL  L          K   S   V+H LRE A  E   V   C +
Sbjct: 22  DKLLVAVSGGPDSLALLHFL---RMANLVPKEAISVGHVNHGLRENAVKEQFIVQTYCEK 78

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I        V+ +      G+   AR  RY    +     +   ++ AH  DDQ+ET+
Sbjct: 79  YDIPFFTEKINVNERAKSLHKGIEETARIVRYEFFEKIMAKESINKLVLAHHADDQIETI 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R  +   +G SG+           I RPFL   + +I  +  +  +++  D SN 
Sbjct: 139 LMRLVRGSSS--IGWSGIQPKRSMQGGYAI-RPFLTITKSEIIEYANKHELAYEIDESNY 195

Query: 196 DDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHMRS 248
           + ++ R R R  V      +  A+Y   ++F +   +    + +    L+ K L  ++  
Sbjct: 196 NPQYTRNRYREEVLPFLTKENPAVYNHFERFSEETSEDFQFLEDLANELLKKNLIKNVEQ 255

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMERVMLFLKSGKRGCVSIG-- 305
              +     N  + L    + +       +  SL     + +++  ++S      S+   
Sbjct: 256 TTLLLSSFKNEANPLQRRAIHLLLRYLYNEDASLITANHIYQIIQMIQSD-NPSSSLNLP 314

Query: 306 -RVVIDRRANFLWITRAVRNLPT 327
            ++V+ R  N L      R  P 
Sbjct: 315 KKLVVKRSYNELHFQFGDRQAPA 337


>gi|113970960|ref|YP_734753.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-4]
 gi|113885644|gb|ABI39696.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-4]
          Length = 465

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 123/316 (38%), Gaps = 17/316 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + +++A SGG DS  L   L            +   I V H L   A    ++   
Sbjct: 19  LQTGSKLVLAYSGGVDSEVLAYGLSEFAKHHPELHYQL--IYVHHGLSPNADAWAKHCQT 76

Query: 76  VCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +   +  +V   + +  P+  + A AR  RY  I +H K     +++TAH  DDQLET
Sbjct: 77  RAASYGLPITVERVQLTLGPRVSVEAEARRMRYQAILQHLKPQ--DVLLTAHHEDDQLET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDIRSFLLQRNISWCEDP 192
           + +  +R    KG+   G    +           RP L   RE I  F   R +   ED 
Sbjct: 135 ILLALKRGQGPKGLAAMGQIQMLSLGEKGTCLQARPLLDISREQIEVFAQTRQLVHIEDE 194

Query: 193 SNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           SN DD+++R  +R  +         ++     +   L  +    V   + + L   +   
Sbjct: 195 SNQDDKYDRNFLRLEIIPRLKARWPSIATTASRSAQLCAEQQAIVDAEVSERLPKLLTEA 254

Query: 250 IAISQDILNIDSTLL----FYLLRVSAAICGGQISLPGYRSMERVMLF---LKSGKRGCV 302
               Q +L +D+       +  L +   I     +LP Y  +++++      K   +  +
Sbjct: 255 SFTQQTVLKLDALSTQTSEWQGLLLRGFIESQGFALPSYVQLQQILQQLMGAKEDAKVQI 314

Query: 303 SIGRVVIDRRANFLWI 318
            IG  V+ R A  L++
Sbjct: 315 QIGDCVLRRFAGMLYL 330


>gi|299820646|ref|ZP_07052535.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601]
 gi|299817667|gb|EFI84902.1| hypoxanthine phosphoribosyltransferase [Listeria grayi DSM 20601]
          Length = 646

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 71/300 (23%), Positives = 128/300 (42%), Gaps = 27/300 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ILVAVSGG DS+ LL  +      R F     +A+ V+H LR  + DE   V D
Sbjct: 18  LDRNKKILVAVSGGPDSLALLHFIV-----RFFPLQNIAAVHVNHQLRAESLDEETLVHD 72

Query: 76  VCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            C  L +        V    ++ + G+  AAR  RY    E  +      ++TAH  DDQ
Sbjct: 73  SCQTLGVDLFSRTIDVKAIAAERKKGIEEAARYVRYQCFEEVMQEAGIDQVVTAHHADDQ 132

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ MR  R       G SG+           + RPFL   + DI ++  +++I +  D
Sbjct: 133 VETIMMRLVRGS--FSSGWSGIAPVRKLGAG-QVIRPFLTASKSDILAYCQRQDIQFALD 189

Query: 192 PSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTV 244
            +N +  F R R+R+ V  +   +  +L  ++ +F +   +    ++     L      +
Sbjct: 190 DTNEETIFTRNRLRKKVIPLLKAENPSLASQITRFAEETREDFTFLDEQAGELFEACAEL 249

Query: 245 HMRS----IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
                   ++ + +  + +   ++  LL         + S    + +++++L ++ GK  
Sbjct: 250 ENGGARLDLVLLKKAGIPLQRRVIHLLLNYLY---KNETSYVSTQHIKQILLCIQ-GKNP 305


>gi|315644384|ref|ZP_07897524.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453]
 gi|315280261|gb|EFU43553.1| tRNA(Ile)-lysidine synthetase [Paenibacillus vortex V453]
          Length = 476

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 21/312 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG DS+ LL  LH +    +   ++     V H  R  +  E   V ++  RL 
Sbjct: 29  IVVAVSGGPDSVALLHVLHEI--SLNHTPLRLICAHVHHGFRTESDQEAEMVRELAERLG 86

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +        +     +   G   AARE RY  + + A+  NA  +  AH  DDQ ETV M
Sbjct: 87  LPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTAQKYNARSVALAHHADDQAETVLM 146

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+       T   +  + + RPFLR  + DI          +  D SN   
Sbjct: 147 RLLRGSGLPGLAGIKFKRT---EKKVELIRPFLRMYKADIVELCRVCGFQYAVDNSNLQT 203

Query: 198 RFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHMRSII 250
           ++ R  +R  V              + +  ++  +    V    A    + +  +   + 
Sbjct: 204 KYRRNAIRLEVLPFLEQYNGQFSSSLNQLAEIVQQEDGFVEREAAKQFRRMVQENDGRLA 263

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK--RGCVSIGR-- 306
             +   L +   L   L+++             +  +E V   + + +     + +G   
Sbjct: 264 FDAPSFLGLHVALQRRLIKLILNYLPSDQENTDFVKIESVRQGILNDQRSNWRLDLGDGI 323

Query: 307 -VVIDRRANFLW 317
             V +      W
Sbjct: 324 TCVREYGQVQFW 335


>gi|310639528|ref|YP_003944286.1| tRNA(ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
 gi|309244478|gb|ADO54045.1| tRNA(Ile)-lysidine synthetase [Paenibacillus polymyxa SC2]
          Length = 482

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 117/324 (36%), Gaps = 22/324 (6%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71
            SL  P   I+VAVSGG DS+ LL  LH +        ++     V H  R E +  E  
Sbjct: 20  HSLWSPGDRIVVAVSGGPDSVALLHILHEI--SVIHMPLQLVCAHVHHGFRPEESDAEAE 77

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            V ++  +L++   ++         +   G   AARE RY+ + + A    A  I  AH 
Sbjct: 78  EVHNIARKLKLPFEMIRVDAPAYMKESGKGPQEAARELRYSFLHDTATKWKAQHIAMAHH 137

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R     G+    +      + N+ + RP LR  + D+  +      S
Sbjct: 138 GDDQAETVLLHLLRGSGPAGLAGMRLARN---EKNVQLIRPLLRMYKADLIEYCNFHGFS 194

Query: 188 WCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +  D +N   ++ R  +R  V        +    +L    +   D    +  A      K
Sbjct: 195 YVTDSTNLSSKYRRNAIRMDVLPFLGQYNEQLTPSLNRLAETMADENDFMEAATLSAYEK 254

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
            +  +    +        +   L   L+++             +R +E V L L      
Sbjct: 255 MVHFNNGRYMFSIASYRKLSVALQRRLIKLILNYLPSGSENFDFRKIETVRLRLLQETSS 314

Query: 301 CVSI---GRVV-IDRRANFLWITR 320
             S+   G  V +      +   R
Sbjct: 315 TWSLDLGGGAVGVREYDQAVLFDR 338


>gi|58336616|ref|YP_193201.1| cell cycle [Lactobacillus acidophilus NCFM]
 gi|58253933|gb|AAV42170.1| putative cell cycle [Lactobacillus acidophilus NCFM]
          Length = 423

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 149/358 (41%), Gaps = 31/358 (8%)

Query: 1   MFLSPIESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M    ++ + FF      +    +LVA SGG DSM LL  L  +   + F   +  A   
Sbjct: 1   MLGKFMKIIDFFNEKQIDLENKKLLVAASGGPDSMALLDMLKDLQKKQKF---ELIAAHF 57

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTI 117
           +H LR  +++E R + D C +  I   V  W KN +P++G+ AAARE RY  +++ AK  
Sbjct: 58  NHQLRSDSEEETRILKDYCQKNEIPLFVAKWAKNEQPKSGIEAAAREVRYNFLTKIAKNE 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  ++TAH  DD +E + ++  R    + M        +     + + RP L   +++I
Sbjct: 118 TADYLLTAHHGDDLIENILLKFIRSGNPEEMNSLQAVGVM---HGVTLLRPLLSSSKQEI 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234
            ++  +R IS+  D +N +D   R R+R  V  I   +  AL     +F      + N V
Sbjct: 175 LAYDKERGISFIVDSTNKEDDTMRNRMRHHVVPILKKENPALIQNALRFSHKMSDLTNVV 234

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
              I +  T+              I S+ +  L +    +              + +++ 
Sbjct: 235 DEKINEIGTIEN-----FLGQAYRIKSSEIKRLTKDQQIVFW------------QKIIWQ 277

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDS 350
           K  +R   ++G   +     F+++ +    +      +   E  +++ R       D+
Sbjct: 278 KFHRRVNKNLGNFSVIEYQGFVYLYKNNLEISKKIFTIKINEPFIFNNRKLLLTTKDN 335


>gi|262393537|ref|YP_003285391.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. Ex25]
 gi|262337131|gb|ACY50926.1| tRNA(Ile)-lysidine synthetase [Vibrio sp. Ex25]
          Length = 436

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 131/322 (40%), Gaps = 18/322 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       +++A SGG DS  LL  L       S   I+  A+ V H L   A D     
Sbjct: 14  RYYQSGTKVVLAFSGGVDSRLLLELLSRYQQAHS---IECHAVYVHHGLSSNADDWADKC 70

Query: 74  SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                ++ I+ S+     +      +   AREARY  ++++ +     +++T    DDQL
Sbjct: 71  LLWAKQVGISCSIELVSLDISNGESIELLAREARYQALTKYIQE--GDILLTGQHADDQL 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M +++ +     + RP L  +R+ I     +  + W ED 
Sbjct: 129 ETFLLALKRGSGPKG--LSSMAESMPFSSG-SLVRPLLTIKRKTIEDAATKLGLEWVEDE 185

Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           SN D R++R  +R  V         +++  +++   L  +    +  L+       +++ 
Sbjct: 186 SNQDTRYDRNFLRHCVIPELSGRWPSIHQAVQRSASLCAQQEALLDELLSAVFERALQTD 245

Query: 250 IAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305
           +++S + L   S L    L+R+  A      S+P    +  +       +      + + 
Sbjct: 246 LSLSIEELAKHSELARARLIRMWLAKL--NTSMPTQVQLNLIWNEVALAQQDANPKLQLK 303

Query: 306 RVVIDRRANFLWITRAVRNLPT 327
           +  + R  N L+    + ++  
Sbjct: 304 QGEVRRFRNRLYWVTEIADVTE 325


>gi|255102772|ref|ZP_05331749.1| putative ATPase [Clostridium difficile QCD-63q42]
          Length = 462

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 25/320 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
           +     I++ +SGG DS+ LL  L+ +  D     I+  A  ++H +R   A+ +  YVS
Sbjct: 16  IQKGDKIVLGLSGGPDSVCLLHVLNRLKKD---FNIEIYAAHLNHQIRGIEAQKDALYVS 72

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +C  + I   V S    K        L   AR+ RY +  E    I A  I   H  +D
Sbjct: 73  KLCEDMGIIFFVKSINVPKYCENEGLSLEEGARKLRYEMFYEIKDKIKANKIAIGHNLND 132

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV MR  R    KG+        I Y  +  I RP L   R +I  +    N++   
Sbjct: 133 QAETVMMRIMRGTGLKGL------KGIDYIRDNCIIRPILDVERNEIEEYCEAYNLNPRI 186

Query: 191 DPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           D +N ++ + R ++R  +            + ++       +     +         +  
Sbjct: 187 DKTNLENIYTRNKIRLDLLPYMKDNFNSNVIESIVRMSNSLKSDNDYIEKEAEAKFREVS 246

Query: 243 TVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RG 300
            +  +  + I+ D  + +   +   +LR S     G  +    R +E +M    + K   
Sbjct: 247 NIKEKGFVEINLDNFVCLHDAIKVRVLRNSIKHILGDTNFVDQRHIEDIMSLEDNSKVNK 306

Query: 301 CVSIGRVV-IDRRANFLWIT 319
            +++ R + + R+ + + +T
Sbjct: 307 MLTLPRNIFVYRKKDCIILT 326


>gi|134298004|ref|YP_001111500.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum reducens MI-1]
 gi|134050704|gb|ABO48675.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum reducens MI-1]
          Length = 472

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 61/301 (20%), Positives = 118/301 (39%), Gaps = 21/301 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R +     +LV VSGG DS+ LL  L+ +  +     I      ++H  R E A ++  +
Sbjct: 15  RMVKKGQLVLVGVSGGLDSVVLLHILNCLKEELG---ISLHVAHLNHMFRGEEATEDALF 71

Query: 73  VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V ++CS   I  +V    V             AARE RY    +  +      I  AH  
Sbjct: 72  VQELCSNWGIPCTVEKRNVPAYAQARGLSSELAAREVRYQFYDDVREETGGHKIALAHHA 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +DQ E+V M   R       GL G+        NL+I RP L+  R +I  +  ++ +++
Sbjct: 132 NDQAESVLMNMLRGS-----GLKGISGIAPVRDNLYI-RPLLKLLRSEIEQYGQRKGLTF 185

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIP---KY 241
             D SN +  + R ++R  +  +        L   + +  +   + +  +  L     + 
Sbjct: 186 RIDSSNLEVVYRRNKLRHQLIPLLEKEYSPGLITILSRMSEQLREEDEYMEELARRGYQK 245

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           + +     +   + ++N    LL  ++R++            +  +E ++  +       
Sbjct: 246 VLLMTDGPVLDRKSLMNQPLVLLRRIMRIAYQEVKSTKQGITFAHVENLISHIMRDGPER 305

Query: 302 V 302
           +
Sbjct: 306 I 306


>gi|304315867|ref|YP_003851012.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777369|gb|ADL67928.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 459

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 134/335 (40%), Gaps = 26/335 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S +++++ +   +     I+V VSGG DS+ L+  L           ++   + V+H
Sbjct: 1   MIESAVKTIKEY-NMIDKGDSIVVGVSGGPDSICLINLLSEFKEK---YNLRLYVVHVNH 56

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
            LR   A ++  +V  VC  + I   +      K          AA RE RY    E  +
Sbjct: 57  MLRGIDADNDASFVEGVCRGMGIPFFLFKEDVKKYALEKGLSEEAAGREVRYKAFHEIFE 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +NA  I  AH  +D  ET+ +   R     G+         +  +N  I RP +R  R+
Sbjct: 117 KVNADKIAVAHNKNDVAETILLNILRGAGTAGL-------IGIKPVNGNIIRPLIRTTRD 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227
           +I  +L  +NI +  D +N +D + R R+R  +            +  LY   +   D  
Sbjct: 170 EILDYLKSKNIKFVVDATNKEDVYRRNRIRLKLIPFIEENFGIDIVENLYRTSQIILDDE 229

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +N     +  K    +  S++    +I  +  +L   L+R++     G  +   Y+ +
Sbjct: 230 DYLNEECEKIFKKISIFNEESVMLDIDEIKKLHDSLKKRLIRMAYKAIRGDTNELTYKHV 289

Query: 288 ERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITR 320
           E  +  +  ++  +  +     VI    N ++  R
Sbjct: 290 EDALKLIDKQTSSKIDLPFEIEVIKSYNNLIFRKR 324


>gi|156975489|ref|YP_001446396.1| hypothetical protein VIBHAR_03220 [Vibrio harveyi ATCC BAA-1116]
 gi|171769914|sp|A7MXZ8|TILS_VIBHB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|156527083|gb|ABU72169.1| hypothetical protein VIBHAR_03220 [Vibrio harveyi ATCC BAA-1116]
          Length = 448

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 131/329 (39%), Gaps = 22/329 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-------IKFSAISVDHCLRETA 66
           R       I++A SGG DS  LL  L       S           K  A+ V H L   A
Sbjct: 14  RYYQSGTKIVLAFSGGVDSRLLLELLSRYQKAYSVDNQSTDSHSFKCHAVYVHHGLSSNA 73

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            +          +  I  SV     ++     +   AREARY  +++H ++    L++T 
Sbjct: 74  DEWAGKCLVWAEQAGITCSVERVSLDTNSGESIELLAREARYQALAKHIQS--GDLLLTG 131

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ+ET  +  +R    KG  LS M +++ +     + RP L  +RE I +   ++ 
Sbjct: 132 QHADDQVETFLLALKRGSGPKG--LSSMAESMPFA-GGTLVRPLLAIKREQIEAVAKEQG 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           + W ED SN D R++R  +R  +         +++  +++   L  +    +  L+    
Sbjct: 189 LDWVEDESNQDTRYDRNFLRHRIMPELSERWPSIHQAVQRSASLCAQQEALLDELLLAVF 248

Query: 243 TVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298
              ++S  ++S + L   S L    L+R+  A      ++P    +  +       +   
Sbjct: 249 ERALQSDFSLSIEELATHSELARARLVRMWLAKL--NANMPTQVQLNLIWNEVALAQQDA 306

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPT 327
              + + +  + R  N L+      ++ T
Sbjct: 307 NPKLQLKQGEVRRFQNRLYWVTETVDVTT 335


>gi|222056506|ref|YP_002538868.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. FRC-32]
 gi|221565795|gb|ACM21767.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. FRC-32]
          Length = 459

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 124/328 (37%), Gaps = 28/328 (8%)

Query: 8   SVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            V  ++R+  L+ P   ++VAVSGG+DS+ LL  L  + S     K++     ++HCLR 
Sbjct: 4   KVNSYIRAHRLISPGDTVIVAVSGGADSVALLDVLAGLRS----SKLRLIVAHLNHCLRG 59

Query: 65  -TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINA 119
             +  +  +V  +     +     +        + +  L  A R ARY  + E A   NA
Sbjct: 60  SESDADEAFVRKLAGGYGVCFVTKAVDVLALSRESKMSLEEAGRVARYRFLKELAINCNA 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +  AH  DDQ ETV MR  R     G GL  M  T        I RP L   R +I S
Sbjct: 120 RSVAVAHHADDQAETVLMRLIRGAG--GSGLRAMTSTTA----GLIIRPLLSVTRREIES 173

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNN 232
           +L ++ + +  D SN D  F R R+R  +              L        +    +  
Sbjct: 174 YLDKKGLGYRTDSSNADLNFLRNRIRHELIPFLRGYNPAITERLATTAVALSEDEKILEA 233

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV-M 291
             A     +  V    +             +   + R +     G +S      +  V +
Sbjct: 234 VTATAFANHALVGSGEVSISVAGADMEPRGIRIRMYRQALQQLKGDLSTISAVHLNDVDL 293

Query: 292 LFLKSGKRGCVSIGR--VVIDRRANFLW 317
           L L     G V++ R   V+ R    ++
Sbjct: 294 LLLSRKPSGKVNLSRGITVMRRYEKLVF 321


>gi|308171958|ref|YP_003918663.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7]
 gi|307604822|emb|CBI41193.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens DSM 7]
          Length = 486

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 136/334 (40%), Gaps = 27/334 (8%)

Query: 4   SPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             ++SV  F ++         I+  VSGG DSM LL  L+      S       A  VDH
Sbjct: 13  DIVKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSMLNKHFGKSSV----IIAAHVDH 68

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
             R   +++++++V   C    I    V         K +    AAAR+ RY    +   
Sbjct: 69  QFRGSESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFKDLMA 128

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +  AH  DDQ+ET+ MR  +     G GL+GM     +   L + RPFL   ++
Sbjct: 129 KHQAKFLALAHHGDDQVETMLMRLAKGTL--GAGLAGMQPVREFASGL-LIRPFLYAAKD 185

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD------IDLHALYLKM-KKFQDLRV 228
           +I  +  Q  +S+  D SNT D + R R R+ V         D+H ++ K+ +   +   
Sbjct: 186 EILEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQ 245

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAI-SQDILNIDSTLLFYLLRV-SAAICGGQISLPGYRS 286
            + +     + K +T    + + + S  +L +   L    +++    +     S    R 
Sbjct: 246 YLQSLTKERMNKVITSKSDTSVEVSSSQLLALPIPLQRRGVQLILNYLYENVPSSFSARH 305

Query: 287 MERVMLFLKSGKRGC---VSIGRVVIDRRANFLW 317
           +++ + + ++G          G  V+      L+
Sbjct: 306 IQQFLEWAENGSASGVLDFPKGLKVVKSYQTCLF 339


>gi|254854449|ref|ZP_05243797.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300766352|ref|ZP_07076311.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017]
 gi|258607849|gb|EEW20457.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|300512951|gb|EFK40039.1| tRNA(Ile)-lysidine synthetase [Listeria monocytogenes FSL N1-017]
          Length = 648

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A +E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHHLRENAANEQNVVEAFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I   +            Q G+   AR  RY    +         +  AH  DDQ+E
Sbjct: 77  ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +  +  N  + L    + +  
Sbjct: 254 KRTTLLLTNFKNEANPLQRRAIHLLL 279


>gi|255692690|ref|ZP_05416365.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565]
 gi|260621576|gb|EEX44447.1| tRNA(Ile)-lysidine synthase [Bacteroides finegoldii DSM 17565]
          Length = 426

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 116/304 (38%), Gaps = 35/304 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR 79
            ILVA+SGG+DS+ LL  LH+          +  A   +  LR E +  + ++V  +C +
Sbjct: 21  KILVALSGGADSVALLCILHT-------AGYRCEAAHCNFHLRGEESNRDEQFVRQLCEK 73

Query: 80  LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +I    + +      ++    +   ARE RY    +  K   A +I  AH  DD +ET+
Sbjct: 74  YKINLHTIDFDTTRYATEKHISIEMGARELRYNWFEKTRKDCQADVIAVAHHQDDSVETI 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G+         +   N  + RP L   RE+I  +L      +  D +N 
Sbjct: 134 LLNLIRGTGITGL-------LGIRPRNGVVVRPLLCINREEIIHYLQSIQQEYVTDSTNL 186

Query: 196 DDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           +D + R ++R       + +     + L        D+    N  +     K +T     
Sbjct: 187 EDEYTRNKIRLNLLPLMQTINPSVKNNLIETSNYLNDVATLYNKYIEETKTKIITEEGIR 246

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
           I ++ ++       +LF +L            +          L  + GK+ C    R++
Sbjct: 247 ISSLLKEP--APEAILFEVLHPLGFNSTQIKDIASS-------LHSQPGKQFCCKEWRII 297

Query: 309 IDRR 312
            DR 
Sbjct: 298 KDRE 301


>gi|91223490|ref|ZP_01258755.1| cell cycle protein MesJ [Vibrio alginolyticus 12G01]
 gi|91191576|gb|EAS77840.1| cell cycle protein MesJ [Vibrio alginolyticus 12G01]
          Length = 436

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 130/322 (40%), Gaps = 18/322 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       +++A SGG DS  LL  L       S   ++  A+ V H L   A +     
Sbjct: 14  RYYQSGTKVVLAFSGGVDSRLLLELLSRYQQAHS---VECHAVYVHHGLSSNADNWADKC 70

Query: 74  SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                ++ I+ S+     +      +   AREARY  ++++ +     +++T    DDQ+
Sbjct: 71  LLWAQQVGISCSIERVSLDINNGESIELLAREARYQALTKYIQE--GDILLTGQHADDQI 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M +++ +     + RP L  +R+ I     +  + W ED 
Sbjct: 129 ETFLLALKRGSGPKG--LSSMAESMPFSCG-SLVRPLLTIKRKTIEDAATKLGLEWVEDE 185

Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           SN D R++R  +R  V         +++  +++   L  +    +  L+       +++ 
Sbjct: 186 SNQDTRYDRNFLRHCVVPELSGRWPSIHQAVQRSASLCAQQEALLDELLSAVFERALQTD 245

Query: 250 IAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305
           +++S + L   S L    L+R+  A      S+P    +  +       +      + + 
Sbjct: 246 LSLSIEELAKHSELARARLIRMWLAKL--NTSMPTQVQLNLIWNEVALAQQDANPKLQLK 303

Query: 306 RVVIDRRANFLWITRAVRNLPT 327
           +  + R  N L+      ++  
Sbjct: 304 QGEVRRFRNRLYWVTETADVTK 325


>gi|149174369|ref|ZP_01852996.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797]
 gi|148846914|gb|EDL61250.1| hypothetical protein PM8797T_03444 [Planctomyces maris DSM 8797]
          Length = 354

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 76/314 (24%), Positives = 129/314 (41%), Gaps = 19/314 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79
           L+AVSGG+DSM LL AL  +   S+            ++H LR   + ++  ++   C R
Sbjct: 41  LIAVSGGADSMALLRALKCLAQSSESLIPPDGLVIAHLNHGLRGTASDEDAEWLKQECRR 100

Query: 80  LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           L +       + N  P +GL    R ARY  ++  A     T I  AHT DDQ ETV   
Sbjct: 101 LSLPCVTEKQELNQGPDSGLEEQCRTARYGFLTRVAIAEQCTQIAVAHTLDDQAETVLHH 160

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       GL G+  T +    L + RP L+  RE++  FL      +  D SN D  
Sbjct: 161 IIRGTGI--TGLRGIPQTRVLQQGLHLIRPLLQISREEVVEFLNVCGQEYRNDESNADTS 218

Query: 199 FERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           F R R+R  +  +         + ++    ++ +++   +N  V  ++        +   
Sbjct: 219 FTRNRIRHQLLPLLKKEFNPNVVQSIQRLSQQAEEVTCVLNAEVDQILKAATLDQNQETW 278

Query: 251 AISQDILNIDSTLLFY--LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
            +   +L      L     L++   +   +  + G+   +R+     SG++  +S+   V
Sbjct: 279 RLDCLVLQDSPDYLVRQCFLKIWQKMNWSRRRM-GFDHWQRLQELTLSGQK--LSLPDQV 335

Query: 309 IDRRANFLWITRAV 322
              R + L I R  
Sbjct: 336 EAERRDKLLILRKR 349


>gi|297616333|ref|YP_003701492.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144170|gb|ADI00927.1| tRNA(Ile)-lysidine synthetase [Syntrophothermus lipocalidus DSM
           12680]
          Length = 463

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 140/353 (39%), Gaps = 37/353 (10%)

Query: 1   MFL--SPIESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           MF   + +  VR F+   +L+ P   ++V VSGG DS+ LL  LH +  +  F      A
Sbjct: 1   MFRGGAVLRKVRQFIMQHNLISPGELVVVGVSGGPDSVALLHLLHLLGKEEGF---SIHA 57

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALIS 111
             ++H LR  A++E  +V ++   L +  +V    V  +    +  +  A R+ARYA   
Sbjct: 58  AHLNHGLRPEAEEEEVFVRELAKSLGLGCTVDRAKVREEARAGRRSVEEAGRQARYAFFI 117

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A+ + A  + TAH   DQ ETV M   R    KG+G               + RPFL 
Sbjct: 118 RVAEELKADKVATAHHMGDQAETVLMHLLRGSGLKGLGGMS-------PRRGILIRPFLT 170

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             R DI S+L +  + +C D SN D  + R R+R  +  +        +         V 
Sbjct: 171 VTRTDIMSYLEENRLDYCLDASNYDWDYLRNRIRHQLIPLLEKEYNPNIVASLCQLATVA 230

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDIL--------NIDSTLLFYLLRVSAAICGGQI--SL 281
               M++ +      + I    Q  L         +   +   ++ ++    GG+    +
Sbjct: 231 RDEDMVLEEMAVKAFKEIARPDQGGLVLNLETMQVLPVAVQRRVILLALKQLGGEQGWEM 290

Query: 282 PGYRSMERVMLFLKSGKRGCV--------SIGRVVIDRRANFLWITRAVRNLP 326
              +S+  +     S K  CV        S GR+++          R    +P
Sbjct: 291 KDVQSVLELAQKAGSDKHICVGKNIWANKSYGRIIVRVGREKTRPFRYFLEIP 343


>gi|109897591|ref|YP_660846.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas atlantica T6c]
 gi|109699872|gb|ABG39792.1| tRNA(Ile)-lysidine synthetase [Pseudoalteromonas atlantica T6c]
          Length = 464

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 129/334 (38%), Gaps = 25/334 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F      V    RS   P H++VA S G DS  LL AL  + +       + SA+ + H
Sbjct: 3   LFDHLAAQVSALKRSHPSPLHLVVAYSAGIDSHVLLHALWQL-TQADISSFQLSALYIHH 61

Query: 61  CLRETAKDEVRYVSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            L + A    ++ + VCS L +  HS   + +     G+ A AR+ARYA + E A     
Sbjct: 62  GLSDNADKWQQHCATVCSELEVEFHSAKVFVDVASGNGIEAQARDARYAKLVEVA--PPG 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM----CDTILYDLNLWISRPFLRCRRE 175
           +++  A   +DQLETV ++ +R    KG+   G              +   RP L   + 
Sbjct: 120 SVVALAQHQNDQLETVLLQLKRGAGPKGLSGMGRLFSRAKPSTPQEQVHFFRPLLEISQA 179

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            I  +  +  + W ED SN +  FER  +RR +  +    L+ +   F     +     A
Sbjct: 180 QIHRYADEHALVWQEDESNQNVDFERNFIRRDINPL----LHQRWPHFAQSVSRSAQLCA 235

Query: 236 MLIPKYLTVHMRSIIAIS--------QDILNIDSTLLFYLLRVSAAICGGQISLPGY--- 284
                   V    ++++         + +L +       ++R+        I  P     
Sbjct: 236 QQQALLDEVTQEKLLSLRNPNNTLSIELLLALTEPWRLQVVRMWLDT--QSILSPSQAIL 293

Query: 285 RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
             + R +L         +   +    R  N L++
Sbjct: 294 AQLSRELLLAAQDASPVIQWQKWQFRRFENALYV 327


>gi|254520535|ref|ZP_05132591.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. 7_2_43FAA]
 gi|226914284|gb|EEH99485.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. 7_2_43FAA]
          Length = 469

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 135/343 (39%), Gaps = 25/343 (7%)

Query: 3   LSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ I  V+ F+   +L+     +LVA+SGG DS+ LL  L+ +   R    I   A  V+
Sbjct: 4   INVINKVKDFIIKNNLIQEGDRVLVALSGGPDSVCLLHILYKL---RESLNIDIGAAHVN 60

Query: 60  HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114
           H LR + A ++  Y  ++C    I    +         +       A RE RY       
Sbjct: 61  HMLRGQDALNDEEYAKEICKEFNIEFYPIRIDIDKIAKEKGISHEMAGREERYKFFDFIK 120

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            T N + I  AH  +DQ ETV M   R    +G  L G+        +  I RP L   R
Sbjct: 121 NTQNYSKIAVAHNSNDQAETVVMNMMRGAGIEG--LCGIRSKR----DGGIIRPILCLSR 174

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
           ED+ ++  + N++   D +N ++ + R +VR  +           + +  +    +    
Sbjct: 175 EDVENYCKENNLNPRIDKTNLENIYSRNKVRLDILPYMKENFNKDIIETLNRMTNLLQID 234

Query: 235 AMLIPKYLT-------VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
              I K           +  S I IS++   ++  ++  +++ S     G+ +    + +
Sbjct: 235 NDFIEKQCNNSYKKYCSNKNSHIVISKEAFLLEKAIITRIIKKSFVEFTGKYNNFEMKHI 294

Query: 288 ERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLI 329
             V+   K+     V +   +V +     +++     N    +
Sbjct: 295 YEVIEIAKNSTNKKVDLPNGIVAENIYGDIYLKNKEYNNKEYV 337


>gi|258543660|ref|YP_003189093.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634738|dbj|BAI00714.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637794|dbj|BAI03763.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640848|dbj|BAI06810.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643903|dbj|BAI09858.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646958|dbj|BAI12906.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650011|dbj|BAI15952.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653001|dbj|BAI18935.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656055|dbj|BAI21982.1| Ile-tRNA lysidine synthase TilS [Acetobacter pasteurianus IFO
           3283-12]
          Length = 435

 Score =  216 bits (550), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 156/385 (40%), Gaps = 30/385 (7%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           FF     YP  I +AVSGG DS+ L           SF +    A+ VDH LR  +  E 
Sbjct: 37  FFPDQSDYP-PIAMAVSGGGDSLCLAWLA-------SFWRKNLLALVVDHGLRPESGQEA 88

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +        + I   ++   + K  + +   AREARYA +    +    T ++  H  DD
Sbjct: 89  QQTIARLRAMNIPAQLLVLTDLKKGSAMAHRAREARYARLIAACQEYGCTDLLLGHQADD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV+MR       +G+   G         ++ + RP L   R  +R+ L Q ++ W +
Sbjct: 149 LAETVWMRQNSSSGPEGLAGMGWITVRP---DIRLIRPLLGFSRTALRNTLRQAHLEWVD 205

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           DPSN D R ERVR+R  +++ D  A + K+  +   LR++     A+ + +++ +     
Sbjct: 206 DPSNQDQRAERVRLRFLLQENDQRAHFWKLGMQSGQLRMRKERERAVQLAQHVVMCPEGW 265

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           +A+  ++ ++D      +L       GG    P   ++ R+            ++    +
Sbjct: 266 VALGPELPDVD------VLAALIRSIGGAAYPPAQSAVVRLKDMATEA-----TLAGTRL 314

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF---QNLSDSLIQIGPQSYRKADVPS 366
            R A    + R    +       E  TVWD R+      ++S   + +    Y    +  
Sbjct: 315 IRHAQKWMLMREAAAM-APAQQAENGTVWDNRFVLCLPASVSKVGLMVAAAGYG---LAR 370

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA 391
            +      R  + +P+       +A
Sbjct: 371 KMRNGQQARFCAVLPALWRAGKRVA 395


>gi|195998279|ref|XP_002109008.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens]
 gi|190589784|gb|EDV29806.1| hypothetical protein TRIADDRAFT_52590 [Trichoplax adhaerens]
          Length = 462

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 152/380 (40%), Gaps = 47/380 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             IE V  +   L     + +AVSGG DS+ L +              K  AI+VDH LR
Sbjct: 3   KFIEVVERY--GLTPSTPVALAVSGGVDSISLCVLARQYFQ-------KLFAITVDHRLR 53

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTINATL 121
             +  E + V+++  +L I H +VS  W        +   AR  RY L+ E  +  N   
Sbjct: 54  AESSQEAQNVNEILDKLNIPHKIVSCNWNQEVNFRKVQELARLKRYRLLGEECQNQNIQY 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFLRCRREDIRSF 180
           ++T H  +DQ+ET   R        G+    +     L+   + + RP L  ++  ++  
Sbjct: 114 LLTGHHLNDQIETFIFRLSCKSGIDGLSCMKLSQNLRLHFPPITLIRPLLSFQKTQLQEV 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHAL-YLKMKKFQDLRVKVNN 232
             Q  + W EDPSN    ++R ++R+ +       ++I L  L    ++ F++    +N 
Sbjct: 174 CHQNKVIWIEDPSNMSLMYKRNQIRQGLAALQNSSKNISLTTLVASSIESFKETGSILNR 233

Query: 233 AVAMLIPKYLTVHMRSIIAIS--QDILNIDSTLLFYLLRVSAAICGGQISLPGYRS---- 286
            V   I     ++   I A +   ++LN ++ ++   L       GGQ   P   S    
Sbjct: 234 RVINHIQGSCEINHDWIFATAHLNNLLNEENYIVRRSLSRLCQYIGGQTYPPLLESVIKL 293

Query: 287 ---MERVMLF-LKSGKRGCV--SIGRVVIDRRANF---------------LWITRAVRNL 325
              ++R++   + +  + C   SI   V+    +                + I+R  + +
Sbjct: 294 HMELKRILTMDIANDNKECYVKSIAGCVVFCINDTKRKYFTKSKNASTIVIIISRQPQKI 353

Query: 326 PTLILYPEETTVWDGRYQFQ 345
             + ++      WD R+   
Sbjct: 354 SMIPIFDGVNLWWDNRFLIN 373


>gi|328551768|gb|AEB22260.1| tRNA(Ile)-lysidine synthetase [Bacillus amyloliquefaciens TA208]
 gi|328910028|gb|AEB61624.1| tRNA(Ile)-lysidine synthase [Bacillus amyloliquefaciens LL3]
          Length = 472

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 136/332 (40%), Gaps = 27/332 (8%)

Query: 6   IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++SV  F ++         I+  VSGG DSM LL  L+      S       A  VDH  
Sbjct: 1   MKSVEDFFKTYHLQAEGETIIAGVSGGPDSMALLSMLNKHFGKSSV----IIAAHVDHQF 56

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++++++V   C    I    V         K +    AAAR+ RY    +     
Sbjct: 57  RGSESEEDMKFVQSYCEAEHILCETVQIDVSAYAKKNKLNKQAAARDCRYQFFKDLMAKH 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +  AH  DDQ+ET+ MR  +     G GL+GM     +   L + RPFL   +++I
Sbjct: 117 QAKFLALAHHGDDQVETMLMRLAKGTL--GAGLAGMQPVREFASGL-LIRPFLYAAKDEI 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD------IDLHALYLKM-KKFQDLRVKV 230
             +  Q  +S+  D SNT D + R R R+ V         D+H ++ K+ +   +    +
Sbjct: 174 LEYCRQERLSYRTDESNTKDDYTRNRFRKTVLPFLKQESPDVHKMFQKVSEALTEDEQYL 233

Query: 231 NNAVAMLIPKYLTVHMRSIIAI-SQDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSME 288
            +     + K +T    + + + S  +L +   L    +++    +     S    R ++
Sbjct: 234 QSLTKERMNKVITSKSDTSVEVSSSQLLALPIPLQRRGVQLILNYLYENVPSSFSARHIQ 293

Query: 289 RVMLFLKSGKRGC---VSIGRVVIDRRANFLW 317
           + + + ++G          G  V+      L+
Sbjct: 294 QFLEWAENGSASGVLDFPKGLKVVKSYQTCLF 325


>gi|308066891|ref|YP_003868496.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
 gi|305856170|gb|ADM67958.1| tRNA(Ile)-lysidine synthase [Paenibacillus polymyxa E681]
          Length = 482

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 116/324 (35%), Gaps = 22/324 (6%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71
            SL  P   I+VAVSGG DS+ LL  LH +        ++     V H  R E +  E  
Sbjct: 20  HSLWSPGDRIVVAVSGGPDSVALLHILHEI--SVIHMPLQLVCAHVHHGFRPEESDAEAE 77

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            V ++  +L +   +          +   G   AARE RY  + + A    A  I  AH 
Sbjct: 78  EVRNIARKLELPFEMTRVDVPAYMKESGKGPQEAARELRYNFLHDMATKWEAQHIAMAHH 137

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R     G+    +      + N+ + RP LR  + D+  F    N+S
Sbjct: 138 GDDQAETVLLHLLRGSGPAGLAGMRLAR---REKNVQLIRPLLRMYKADLIEFCNFYNLS 194

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAVAM----LIPK 240
           +  D +N   ++ R  +R  V          L   + +  +     N+ +         K
Sbjct: 195 YVTDSTNLSSKYRRNAIRMDVLPFLGQYNERLTPSLNRLAETMADENDFMEASTLSAYEK 254

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
            + +     +        +   L   L+++             +R +E V L L      
Sbjct: 255 MVRLDNGRYMFPIASYRKLSVALQRRLIKLILNYLPSDSENFDFRKIETVRLRLLQEASS 314

Query: 301 CVSI---GRVV-IDRRANFLWITR 320
             S+   G  V +      +   R
Sbjct: 315 TWSLDLGGGAVGVREYDQAVLFDR 338


>gi|46906451|ref|YP_012840.1| hypoxanthine phosphoribosyltransferase, fusion [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|61216556|sp|Q724J4|TILS_LISMF RecName: Full=Bifunctional protein tilS/hprT; Includes: RecName:
           Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase; Includes: RecName:
           Full=Hypoxanthine-guanine phosphoribosyltransferase;
           Short=HGPRT; Short=HGPRTase
 gi|46879715|gb|AAT03017.1| conserved hypothetical protein/hypoxanthine
           phosphoribosyltransferase, fusion [Listeria
           monocytogenes serotype 4b str. F2365]
          Length = 648

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A +E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHHLRENAANEQNVVETFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I   +            Q G+   AR  RY    +         +  AH  DDQ+E
Sbjct: 77  ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +  +  N  + L    + +  
Sbjct: 254 KRTTLLLTNFKNEANPLQRRAIHLLL 279


>gi|28377429|ref|NP_784321.1| cell cycle protein MesJ [Lactobacillus plantarum WCFS1]
 gi|300768962|ref|ZP_07078853.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|61216640|sp|Q88Z33|TILS_LACPL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28270261|emb|CAD63162.1| cell cycle protein MesJ [Lactobacillus plantarum WCFS1]
 gi|300493483|gb|EFK28660.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
          Length = 448

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 136/308 (44%), Gaps = 29/308 (9%)

Query: 3   LSPIESV--RFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++PI+    +     L+ P   ++VAVS G DSM LL  L  + +     + +     V+
Sbjct: 1   MTPIQKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLLQRLPAA---ERPRVVVAHVN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTIN 118
           H LRE ++ E  Y+   C +  +   +  W   + P++G+ AA R+ RY + ++  +   
Sbjct: 58  HHLREQSQMEADYLRQYCQQQNLKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENR 117

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT ++TAH  +DQ+ET  M+  R        L+G+  +  +     + RP L   ++ +R
Sbjct: 118 ATAVLTAHHANDQVETYLMKLARGGDI--SQLTGIATSRPFATG-RLIRPLLTWSKDQLR 174

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---- 234
           ++  ++++ + ED +N D    R R+R  V    +      +K   D + ++   +    
Sbjct: 175 NYAAEQHVVYFEDVTNQDVALTRNRIRHRVVPELMTVNPQLLKHVADYQQQLTTLLTAKK 234

Query: 235 ---------------AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
                          A+++ ++  +  +  +A+    L   +  LF   ++   +  GQ 
Sbjct: 235 QMVTVLLSQVVTATGALVVDQWGALPSQWQLAVFATWLEQQTQQLFTESKLQPLVSWGQR 294

Query: 280 SLPGYRSM 287
           + P    +
Sbjct: 295 TRPATSRL 302


>gi|308179642|ref|YP_003923770.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308045133|gb|ADN97676.1| cell cycle protein MesJ [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 448

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 136/308 (44%), Gaps = 29/308 (9%)

Query: 3   LSPIESV--RFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++PI+    +     L+ P   ++VAVS G DSM LL  L  + +     + +     V+
Sbjct: 1   MTPIQKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLLQRLPAA---ERPRVVVAHVN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTIN 118
           H LRE ++ E  Y+   C +  +   +  W   + P++G+ AA R+ RY + ++  +   
Sbjct: 58  HHLREQSQMEADYLRQYCQQQNLKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENR 117

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT ++TAH  +DQ+ET  M+  R        L+G+  +  +     + RP L   ++ +R
Sbjct: 118 ATAVLTAHHANDQVETYLMKLARGGDI--SQLTGIATSRPFATG-RLIRPLLTWSKDQLR 174

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---- 234
           ++  ++++ + ED +N D    R R+R  V    +      +K   D + ++   +    
Sbjct: 175 NYAAEQHVVYFEDVTNQDVALTRNRIRHRVVPELMTVNPQLLKHVADYQQQLTTLLMAKK 234

Query: 235 ---------------AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
                          A+++ ++  +  +  +A+    L   +  LF   ++   +  GQ 
Sbjct: 235 QMVTVLLSQVVTATGALVVDQWGALPSQWQLAVFATWLEQQTQQLFTESKLQPLVSWGQR 294

Query: 280 SLPGYRSM 287
           + P    +
Sbjct: 295 TRPATSRL 302


>gi|167759635|ref|ZP_02431762.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704]
 gi|167662761|gb|EDS06891.1| hypothetical protein CLOSCI_01993 [Clostridium scindens ATCC 35704]
          Length = 449

 Score =  215 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 134/340 (39%), Gaps = 31/340 (9%)

Query: 8   SVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            V+ ++     L     ++V VSGG+DS+ LL  L  +  +     +   A+ V H LRE
Sbjct: 4   KVKAYIEKYHMLDEKDKVIVGVSGGADSICLLFMLIQLKKEMG---LSVEAVHVHHGLRE 60

Query: 65  -TAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            TA  +  YV  VC  L I     +  V       +     A R  R  +  E  +    
Sbjct: 61  KTADADAVYVKKVCKELGIGLRLYYEDVKSFALHNKMSEEEAGRYVRRRIFKEVLQEAGG 120

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I  AH  +D  ET+     R  + KGMG        +  ++    RP L  +RE+I S
Sbjct: 121 TKIALAHHQNDNAETLLWNLCRGCSLKGMG-------GIAPVDGVFIRPLLCLKREEIES 173

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRF--------VRDIDLHALYLKMKKFQDLRVKVN 231
           +L+ R IS+C D +N +D   R R+R          V +  +  +   M++ + L   V 
Sbjct: 174 YLVNRGISYCTDETNLEDGHTRNRIRNHVIPYLEEQVNERAVSHMSETMEQMRQLWKYVE 233

Query: 232 NAVAMLIPKYLTVHMRS--IIAISQDILNIDSTLLFYLLRVSA-AICGGQISLPGYR-SM 287
           +       + + V       + +  + + +   L  Y+L        GG+  +      M
Sbjct: 234 SETTRYAARCIKVSKDQTRRVLLKAEFILVPEALRSYVLHECICQAAGGRKDIESVHTKM 293

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT 327
              +L  + G++  +  G V + R    + + R     P 
Sbjct: 294 LSELLDNQVGRQARLPYGIVAVRRYE-GIELRREGDGRPK 332


>gi|227903173|ref|ZP_04020978.1| cell cycle [Lactobacillus acidophilus ATCC 4796]
 gi|227868978|gb|EEJ76399.1| cell cycle [Lactobacillus acidophilus ATCC 4796]
          Length = 418

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 143/340 (42%), Gaps = 29/340 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +LVA SGG DSM LL  L  +   + F   +  A   +H LR  +++E R + D 
Sbjct: 14  LENKKLLVAASGGPDSMALLDMLKDLQKKQKF---ELIAAHFNHQLRSDSEEETRILKDY 70

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C +  I   V  W KN +P++G+ AAARE RY  +++ AK   A  ++TAH  DD +E +
Sbjct: 71  CQKNEIPLFVAKWAKNEQPKSGIEAAAREVRYNFLTKIAKNETADYLLTAHHGDDLIENI 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M        +     + + RP L   +++I ++  +R IS+  D +N 
Sbjct: 131 LLKFIRSGNPEEMNSLQAVGVM---HGVTLLRPLLSSSKQEILAYDKERGISFIVDSTNK 187

Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +D   R R+R  V  I   +  AL     +F      + N V   I +  T+        
Sbjct: 188 EDDTMRNRMRHHVVPILKKENPALIQNALRFSHKMSDLTNVVDEKINEIGTIEN-----F 242

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                 I S+ +  L +    +              + +++ K  +R   ++G   +   
Sbjct: 243 LGQAYRIKSSEIKRLTKDQQIVFW------------QKIIWQKFHRRVNKNLGNFSVIEY 290

Query: 313 ANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDS 350
             F+++ +    +      +   E  +++ R       D+
Sbjct: 291 QGFVYLYKNNLEISKKIFTIKINEPFIFNNRKLLLTTKDN 330


>gi|148264776|ref|YP_001231482.1| tRNA(Ile)-lysidine synthetase [Geobacter uraniireducens Rf4]
 gi|146398276|gb|ABQ26909.1| tRNA(Ile)-lysidine synthetase [Geobacter uraniireducens Rf4]
          Length = 459

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 77/328 (23%), Positives = 123/328 (37%), Gaps = 27/328 (8%)

Query: 6   IESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ V  F+    L  P   ++VAVSGG+DS+ LL  L    S R    ++   + ++HCL
Sbjct: 2   LKKVAGFIEEHDLFSPGDTVVVAVSGGADSVALLDVLAGFSSLR----LRLIVVHLNHCL 57

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTI 117
           R   +  +  +V ++  +  +     +        + +  L  A R ARY   SE A + 
Sbjct: 58  RGAESDADEAFVRELAGKYGVTFVTQAVDVQDLSKREKLSLEEAGRAARYRFFSEIAASC 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  ++ AH  DDQ ETV MR  R     G GL  M             RP L   R +I
Sbjct: 118 KARAVVLAHHADDQAETVLMRLLRGAG--GSGLCAMAAKSA----GMYVRPLLSVTRFEI 171

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKV 230
            ++L +R + +  D SN D  F R RVR  +              L        +    +
Sbjct: 172 EAYLRERGLVFRTDSSNADVNFLRNRVRHELIPFLKSYNPAITDRLVTTAAALSEDEEIL 231

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           +        ++ TV    +  +   I      L   L R +     G ++    R +  +
Sbjct: 232 DKVTTEAFNRFGTVEAGRVKFVVAGIATELRGLRLRLYRRAVLQVKGDLTQISARHLNDI 291

Query: 291 --MLFLKSGKRGCVSIGRVVIDRRANFL 316
             +L   S     V      + R    L
Sbjct: 292 DSLLLSASPNSRLVLPEGFTVKRCYGEL 319


>gi|213963862|ref|ZP_03392110.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno]
 gi|213953542|gb|EEB64876.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sputigena Capno]
          Length = 415

 Score =  215 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 120/326 (36%), Gaps = 31/326 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYV 73
           + +    ILVA+SGG DS+ L   LH       F   +      +  LR E +  +  +V
Sbjct: 5   NQLKNKKILVAISGGIDSVVLTHLLH-------FHGTELLLAHCNFQLRGEESDGDEAFV 57

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +    L I   V  +         Q     AARE RY    E  +T +   + TAH  +
Sbjct: 58  RNFAKTLGIPLEVKRFDTKEYAKAHQLNTQLAARELRYEWFYELLETHHCDALATAHHAN 117

Query: 130 DQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           D LET  +   R     G +G+    D         I RP L+  R+ I  +     + W
Sbjct: 118 DNLETFLINLSRGSGLDGLLGIPQQTDK--------IVRPLLQWSRQQIYDYAEAHELQW 169

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            ED SN  +++ R  +R  +           ++ F   +  ++ +   +           
Sbjct: 170 REDSSNASNKYVRNVIRHEIIPQMALVHPNYLENFNQTQEYLHQSARFIDFYIEEWRKSC 229

Query: 249 I-----IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
                 I ++ + L     +   L ++      G +     + ++ ++   ++GK+   +
Sbjct: 230 FEGTQPIFVNTEKLQTAPEIDLVLHKLFYPYGFGNV-----KDLKNLLFNAEAGKQLLSA 284

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLI 329
              +V D +  +L    A    PTL 
Sbjct: 285 THSLVKDSKGAWLKELTAESLPPTLT 310


>gi|164686638|ref|ZP_02210666.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM
           16795]
 gi|164604367|gb|EDQ97832.1| hypothetical protein CLOBAR_00231 [Clostridium bartlettii DSM
           16795]
          Length = 462

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 125/314 (39%), Gaps = 25/314 (7%)

Query: 2   FLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           F   ++++     +L+     I++ +SGG DS+ LL  L+ +        I+  A  ++H
Sbjct: 3   FEKVLDTINR--HNLIEKGDKIVLGISGGPDSVCLLHILNRLKEQ---FDIEIYAAHLNH 57

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
            +R   A+ +  YV+ +C  + I + V S    K     +  +   AR+ RY +  E  +
Sbjct: 58  QIRGIEAQKDALYVTRLCEEMGIKYFVRSIDVPKYCQENKLSIEDGARKLRYEMFFEIMQ 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  I  AH  +DQ ET+ MR  R     G+        I Y  +  I RP L   R 
Sbjct: 118 RTHANKIAIAHNVNDQAETILMRIMRGTGLHGL------RGIEYIRDNVIIRPILDIERS 171

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I S+  Q N++   D +N D  + R ++R  +           + K            +
Sbjct: 172 EIESYCEQYNLNPRIDQTNLDPIYTRNKIRLKLLPYMQENFNSNVTKAIVRMSSSIKEDS 231

Query: 236 MLIPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             I     +    I  IS D         +++ +++ + +LR +     G  +    + +
Sbjct: 232 DYIESNALMKFEEICLISDDSIDIPIDLFVDLHNSIKYRVLRYAIKYVLGDTNFIDQKHI 291

Query: 288 ERVMLFLKSGKRGC 301
             ++      K G 
Sbjct: 292 LEIVELEPENKVGK 305


>gi|158520085|ref|YP_001527955.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3]
 gi|158508911|gb|ABW65878.1| tRNA(Ile)-lysidine synthetase [Desulfococcus oleovorans Hxd3]
          Length = 480

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 15/247 (6%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71
            +++ P   +LV VSGG DS+ LL AL  +  + +    + S   V H LR   A  +  
Sbjct: 24  HAMIAPGEAVLVGVSGGPDSVALLHALVRLQPELAVA--RVSVAHVHHGLRGAEADADQA 81

Query: 72  YVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +V+ +  RL +         +         +  AAR ARY   S+ A       I TAH 
Sbjct: 82  FVAALAERLGLPFYTEKIDVAAAARNTGASVEDAARTARYRFFSDTAAAHGYHKIATAHH 141

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             D  E V M   R    +G+       + +  +   I RP +   REDI +FL    + 
Sbjct: 142 AGDNAEWVLMNLVRGAGPEGL-------SGIPPVRENIIRPLIHVSREDILAFLTHGGMD 194

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           + ED +N D  F R RVR  +  +        +    +   ++    ++ I   ++    
Sbjct: 195 YVEDSTNADLTFTRNRVRHHLLPLIEEHYNPGIAACLNRVAEIFREESLWIRDMVSGLFE 254

Query: 248 SIIAISQ 254
             + + +
Sbjct: 255 QAVLLCE 261


>gi|269966268|ref|ZP_06180357.1| cell cycle protein MesJ [Vibrio alginolyticus 40B]
 gi|269829183|gb|EEZ83428.1| cell cycle protein MesJ [Vibrio alginolyticus 40B]
          Length = 436

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 131/322 (40%), Gaps = 18/322 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       +++A SGG DS  LL  L       S   ++  A+ V H L   A +     
Sbjct: 14  RYYQLGTKVVLAFSGGVDSRLLLELLSRYQQAHS---VECHAVYVHHGLSSNADNWADKC 70

Query: 74  SDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                ++ I+ S+     +      +   AREARY  ++++ +     +++T    DDQ+
Sbjct: 71  LLWAQQVGISCSIERVSLDISNGESIELLAREARYQALTKYIQE--GDILLTGQHADDQI 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +  +R    KG  LS M +++ +     + RP L  +R+ I     +  + W ED 
Sbjct: 129 ETFLLALKRGSGPKG--LSSMAESMPFSCG-SLVRPLLTIKRKTIEDAATKLGLEWVEDE 185

Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           SN D R++R  +R  V         +++  +++   L  +    +  L+       +++ 
Sbjct: 186 SNQDTRYDRNFLRHCVVPELSGRWPSIHQAVQRSASLCAQQEALLDELLSAVFERALQTD 245

Query: 250 IAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIG 305
           +++S + L   S L    L+R+  A      S+P    +  +       +      + + 
Sbjct: 246 LSLSIEELAKHSELARARLIRMWLAKL--NTSMPTQVQLNLIWNEVALAQQDANPKLQLK 303

Query: 306 RVVIDRRANFLWITRAVRNLPT 327
           +  + R  N L+    + ++  
Sbjct: 304 QGEVRRFRNRLYWVTEIADVTE 325


>gi|170288158|ref|YP_001738396.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2]
 gi|226695551|sp|B1L8R5|TILS_THESQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|170175661|gb|ACB08713.1| tRNA(Ile)-lysidine synthetase [Thermotoga sp. RQ2]
          Length = 414

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 17/278 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L    H+LVAVSGG DSM LL  L          KIK +A  +DH +RE+++ +  +V  
Sbjct: 2   LEEGEHVLVAVSGGIDSMTLLYVLRKFSP---LLKIKITAAHLDHRIRESSRRDREFVER 58

Query: 76  VCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +C +  I                   L   ARE RY  +   AK + A+ I  AH  +D 
Sbjct: 59  ICRQWNIPVETSEVDVPSLWKDSGKTLEEIAREVRYDFLKRTAKKVGASKIALAHHKNDL 118

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LETV  R  R     G+         +        RPFL  +R +I  +  ++ + +  D
Sbjct: 119 LETVVHRLIRGTGPLGLA-------CISPKREEFIRPFLVFKRSEIEEYAREKGVPYVVD 171

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            +N D ++ R  +R  +  + +  L   ++      V V + +   + + +   +   + 
Sbjct: 172 ETNYDVKYTRNFIRHRIVPL-MKELNPTVEDAVYRLVSVTHLLRNFVERTVQDFVERNVY 230

Query: 252 ISQD-ILNIDSTLLFYLLRVSAAICGGQI-SLPGYRSM 287
             +D  + ++   LF  L V+  +       +P Y  +
Sbjct: 231 FYKDYAVFVEPEDLFLFLEVTRWVLKEMYGRVPEYEKL 268


>gi|116871602|ref|YP_848383.1| hypothetical protein lwe0182 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740480|emb|CAK19600.1| conserved hypothetical/hypoxanthine phosphoribosyltransferase,
           fusion protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 648

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 104/266 (39%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS  LL  L    S +   K   S   ++HCLRE A+ E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSFALLHFL---WSSKLVPKESISVAHLNHCLREGAEKEQLVVQTFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I   V +    K     Q G+   AR  RY    +     +   ++ AH  DDQ+E
Sbjct: 77  EEHHIPFFVEAVDIKKHAETIQKGIEETARIVRYKFFEKVMTENDINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  +   +G SG+           I RPFL   + +I  +  + ++ +  D S
Sbjct: 137 TILMRLVRGSSS--IGWSGIQPKRKVTKGYAI-RPFLPITKAEIIQYASKHDLPYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           N    + R R R  +      +  A+Y    +F +   +    +      ++ K L  + 
Sbjct: 194 NVSQEYTRNRYRTQLLPFLSKENPAVYDHFNRFSEETSEDFLFLEELANDVLKKNLIQNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +     N  + L    + +  
Sbjct: 254 KQTTLLLSSFKNEANPLQRRAIHLLL 279


>gi|254555612|ref|YP_003062029.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1]
 gi|254044539|gb|ACT61332.1| cell cycle protein MesJ [Lactobacillus plantarum JDM1]
          Length = 448

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 135/308 (43%), Gaps = 29/308 (9%)

Query: 3   LSPIESV--RFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++PI+    +     L+ P   ++VAVS G DSM LL  L  + +     + +     V+
Sbjct: 1   MTPIQKFNRQLAAAKLLSPQQTVVVAVSTGVDSMVLLHLLQRLPAA---ERPRVVVAHVN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTIN 118
           H LRE ++ E  Y+   C +  +   +  W   + P++G+ AA R+ RY + ++  +   
Sbjct: 58  HHLREQSQMEADYLRQYCQQQNLKLVMADWLPAAHPKSGIEAAGRQFRYHVFAKVMRENR 117

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT ++TAH  +DQ+ET  M+  R        L+G+  +  +     + RP L   ++ +R
Sbjct: 118 ATAVLTAHHANDQVETYLMKLARGGDI--SQLTGIATSRPFATG-RLIRPLLTWSKDQLR 174

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---- 234
           ++  ++++ + ED +N D    R R+R  V    +      +K   D + ++   +    
Sbjct: 175 NYAAEQHVVYFEDVTNQDVALTRNRIRHRVVPELMTVNPQLLKHVADYQQQLTTLLTAKK 234

Query: 235 ---------------AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
                          A+++ ++  +  +  +A+    L      LF   ++   +  GQ 
Sbjct: 235 QMVTVLLSQVVTTTGALVVDQWGALPSQWQLAVFATWLEQQMQQLFTESKLQPLVSWGQR 294

Query: 280 SLPGYRSM 287
           + P    +
Sbjct: 295 TRPATSRL 302


>gi|291166567|gb|EFE28613.1| tRNA(Ile)-lysidine synthase [Filifactor alocis ATCC 35896]
          Length = 466

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 136/333 (40%), Gaps = 26/333 (7%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +E++R    +L+ P   ++VA SGG DS+ LL  LH + ++     IK  A  ++H +
Sbjct: 6   KVLETIRQ--NNLIQPKEKVIVAFSGGPDSVCLLHLLHELKAEL---DIKLYAFHLNHQI 60

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   A  +  Y   +C    I   V    V       +  L  AAR+ RY  +      +
Sbjct: 61  RGLDAHRDAWYCLSLCDEYDIPFFVDSTDVPGYAQNMKMSLEEAARDVRYKKLFYLKSIL 120

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           NA  I  AH  DDQ+ETV MR  R     G GL G+        N  I RP L  ++++I
Sbjct: 121 NADKIAVAHNMDDQVETVLMRMMR-----GTGLYGLKGMEQLLSNG-IIRPLLSVQKKEI 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV------- 230
              L Q  I W  D +N +D + R ++R  +  +         +    +   +       
Sbjct: 175 IEELEQNGIHWQVDTTNQEDNYTRNKIRLSMILLMEECYPTAKENIFRMSASIREDSQYI 234

Query: 231 -NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
             NA++     +  ++  ++     D  ++D  +    +R S  +    +       ++ 
Sbjct: 235 EQNAMSFFEENHTLINSNTVKLELDDFFDMDLAIQKRSVRYSINVVLHSLKGIETVHLDS 294

Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWITRA 321
           V+   K      +++   + + ++ + L+ +  
Sbjct: 295 VIQLAKRYGDAQINLPKNLTVYKKQSALYFSTE 327


>gi|310816574|ref|YP_003964538.1| Probable cell cycle protein [Ketogulonicigenium vulgare Y25]
 gi|308755309|gb|ADO43238.1| Probable cell cycle protein [Ketogulonicigenium vulgare Y25]
          Length = 407

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 153/396 (38%), Gaps = 22/396 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +   P    R FV  +     I VAVSGGSDS      L ++L        +  A +VDH
Sbjct: 4   LSKDPRAIARAFVTQVT--GRIGVAVSGGSDS------LAALLLLHEAAPGRIWAATVDH 55

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V   C+   IAH  + W+ +     L   AR ARY+L+S  A+     
Sbjct: 56  NLRADSAAEAEMVQRFCAARDIAHYTLPWQPADMAGNLPHRARIARYSLLSTWAREAFLA 115

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++ AH  +DQ ET  M   R     G+              +   RPF+   R+ +R  
Sbjct: 116 GVVIAHNREDQAETYLMNLGRSAGIDGLSAM---RDRWRVEGVPFYRPFMALSRKALRDV 172

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVA 235
           L    ISW +DP+N D  ++RVR+RR +  +    +              +   ++ A+ 
Sbjct: 173 LRAGAISWVDDPTNDDPHYQRVRLRRLLPQLAEAGIETTDITRAALHLSQVSEALDWALT 232

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
             +    T     I+       ++ + + + LL  +    GG    P    +  +   L 
Sbjct: 233 AAVGDPTT-PAGEIVLPVAQYRSLPTAMRYRLLLRALDWIGGPAYPPRGPELTGLDQALF 291

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
              R   ++G  +    A  L ITR V     +        ++DGR+Q          IG
Sbjct: 292 GASRR--TLGGCLFTSGARHLRITREVAA---VGAAVPAGVLFDGRWQLAGQLPQGALIG 346

Query: 356 PQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
                 A+ P       ++ +L + P+    + L+A
Sbjct: 347 RLGGAIAEFPDWRASGYSRASLMAGPAIWQAQRLIA 382


>gi|329962376|ref|ZP_08300380.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057]
 gi|328530099|gb|EGF56984.1| tRNA(Ile)-lysidine synthetase [Bacteroides fluxus YIT 12057]
          Length = 423

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 117/315 (37%), Gaps = 43/315 (13%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R       ILVA+SGG+DS+ LL  L S             A   +  LR   +  +  +
Sbjct: 14  RLFSPEEKILVALSGGADSVALLHLLLS-------AGYTCEAAHCNFHLRDAESDRDEAF 66

Query: 73  VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V ++C+   +    V +       +    +  AARE RYA   E  K   A +I  AH  
Sbjct: 67  VRNLCNARHVPLHTVHFDTKREAEERHISIEMAARELRYAWFEEIRKKCGAGVIAVAHHQ 126

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET  +   R     G+         +   N  + RP L   R++I S+L     ++
Sbjct: 127 DDSVETFLLNLIRGTGINGL-------RGIRPKNGKVVRPLLCIGRKEIISYLESIGQAY 179

Query: 189 CEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
             D +N  D + R ++R       + +      ++        D  +  N  +     + 
Sbjct: 180 VTDSTNLQDEYTRNKIRLNLLPMMQEINPAVKESILKTAGHLDDAAIIYNKGIEEAKQRV 239

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG- 300
           +T     I A+ Q+      TLLF +L              G+ + +   +F  +  +  
Sbjct: 240 MTDKGIQISALLQEP--SPETLLFEIL-----------HPLGFNASQTKDIFQAADGQPG 286

Query: 301 ---CVSIGRVVIDRR 312
                +  RVV DR 
Sbjct: 287 KIFANAGWRVVKDRE 301


>gi|255282025|ref|ZP_05346580.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469]
 gi|255267344|gb|EET60549.1| tRNA(Ile)-lysidine synthase [Bryantella formatexigens DSM 14469]
          Length = 471

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 121/323 (37%), Gaps = 26/323 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R +     ++  VSGG+DS+ LL  L      R        A+ V+H +R + + ++  +
Sbjct: 12  RMIEAGDKVIAGVSGGADSLCLLFVLMEY---RKRVPFSILAVHVEHGVRGQESLEDAAF 68

Query: 73  VSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V  +C    I + +V         + +  +  A R ARY       +   A  I  AH  
Sbjct: 69  VEKICREHTIEYRLVQVCVPELARREKLSVEEAGRRARYEAFERIRQETGADKIAVAHNR 128

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV  +  R     G G        +  +   + RP L C R +I  +L   + +W
Sbjct: 129 DDQAETVLFQIARGSGLTGAG-------GIRPVRGAVIRPLLSCSRAEIEEYLRGHSQTW 181

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
             D +N +  + R R+R  +  +    +       +    +   +V   +     K L  
Sbjct: 182 RTDATNQETDYARNRIRHQILPLLEEQINSAGREHIAALAEELQRVQAYMEQETQKCLEE 241

Query: 245 HM---RSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
                   + I+   L    S L  Y+LR S    G  +     R +  +   L  G+ G
Sbjct: 242 LADFGEGTVQITVSALKEKPSLLQEYVLRESLRRAGCPLKDISRRHIADIKK-LAGGQSG 300

Query: 301 CVSI--GRVVIDRRANFLWITRA 321
             ++  G     R  + L + +A
Sbjct: 301 RQTMLPGGWQAVRSFDKLLLKKA 323


>gi|152995318|ref|YP_001340153.1| tRNA(Ile)-lysidine synthetase [Marinomonas sp. MWYL1]
 gi|150836242|gb|ABR70218.1| tRNA(Ile)-lysidine synthetase [Marinomonas sp. MWYL1]
          Length = 436

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 134/375 (35%), Gaps = 24/375 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + V  SGG DS  LL AL + ++     K K   + V H L   A D + +   +C+ L
Sbjct: 32  KVWVGFSGGVDSHVLLHALVNQITLAQ--KQKLFVLHVHHGLSANADDWLLHCETICNNL 89

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +       +    Q  +  AAR ARY     +       +I+ AH   DQ ET+  R  
Sbjct: 90  GVTFKAEKVQLES-QASIEDAARNARYQAFQANMGE--GDVILLAHHAGDQAETLLFRLL 146

Query: 141 RDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R     G GLSGM +          + RP L   ++DI  + +Q  + W  D SN D+RF
Sbjct: 147 RGTG--GKGLSGMPNERWLANGKARLIRPLLSVSKQDIEGYAIQHKLDWIHDESNFDERF 204

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIAISQ-D 255
            R  +RR +            +       ++    AML     + L+V       +   +
Sbjct: 205 TRNFLRRRIVPALKERFPRMEQNMVSSADRIATDYAMLSQFAQQQLSVWCNPFGGLELSN 264

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
           IL+       +  R         ++     S+E +       K+         I R  N 
Sbjct: 265 ILDKPLDERLFWWRHFLQTKNVSLTQSQLESVEVMFSGA-EDKQPEFEFANGRIMRHQNS 323

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQ----FQNLSDSLIQIGPQSYRKADVPSGIPPI 371
            ++      +   +L  + T      ++             ++  +   ++ + S     
Sbjct: 324 AYLLPPDDVVKFAVLVDDVTI-----FRSFDCITVKGSDACELRARPLGESLIMSNGKTR 378

Query: 372 IAQRAL--SSMPSKE 384
             ++ L   ++PS  
Sbjct: 379 KLKKWLNDEAIPSWW 393


>gi|89100508|ref|ZP_01173369.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
 gi|89084774|gb|EAR63914.1| Cell cycle protein MesJ [Bacillus sp. NRRL B-14911]
          Length = 462

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 110/297 (37%), Gaps = 20/297 (6%)

Query: 7   ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
                F+R     +    +LV VSGG DS+ LL  L      R     + +AI  DH  R
Sbjct: 4   AKAEAFLRHHGVRLEGKKVLVGVSGGPDSLALLHLL---WKKRKVWGAEPAAIHFDHMFR 60

Query: 64  -ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            E +  E R+V   C    I        VS    +       AARE RY    E  K   
Sbjct: 61  GEESYQEARFVQSFCEERNIPFEMRREDVSAYMKESGKSSQTAARECRYRFFEEAMKASG 120

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A+ +   H  DDQ+ET+ MR  R     G   SG+  +  +     I RPFL   R +I 
Sbjct: 121 ASYLALGHHGDDQMETILMRLTRGS--TGEARSGIPFSRPFG-GGEIIRPFLCLERGEIE 177

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            + L   +    DPSN  D + R R RR V              FQ    ++      L+
Sbjct: 178 EYCLSNELDPRRDPSNEKDVYSRNRFRRNVLPFLKSENPQAHVHFQRFSEEL-RGDEQLL 236

Query: 239 PKYLTVHMRSIIAISQDI-LNIDSTLLFY----LLRVSAAICGGQISLPGYRSMERV 290
            +     M +++   +D  + ID+         L R    +    +      S+  +
Sbjct: 237 QELTAREMNTVMKKKEDAEITIDAERFMLMPMPLQRRGIQLILNYLYQERPASLSAL 293


>gi|298368794|ref|ZP_06980112.1| tRNA(Ile)-lysidine synthase [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282797|gb|EFI24284.1| tRNA(Ile)-lysidine synthase [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 430

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 121/301 (40%), Gaps = 24/301 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS+ LL  L  +     F      A+ V H L   A D   +  D C+RL I 
Sbjct: 14  VGLSGGLDSVVLLHMLSRLRQQHGF---SLRAVHVHHGLSPNADDWAEFCLDYCNRLSIP 70

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +   +  K  +G+ AAAR  RY + S+        ++  AH  DDQ+ET  +   R  
Sbjct: 71  IRIAHVRVKKGNSGIEAAARAERYRVFSDGLS----DILALAHHQDDQVETFMLAVVRGG 126

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   L+ M      +    I RP L   R D++ +    ++ + ED SN D  + R  
Sbjct: 127 GLR--SLAAMPQQRDLNAETKIWRPLLPFTRSDLQHYAELHHLDFIEDESNKDSAYLRNW 184

Query: 204 VRRFVRDIDLHALYLKMKKF--------QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           +R       L A   ++  F        + L+  +     ++   Y  V+     ++++ 
Sbjct: 185 LRNE----ALPAWRGRIPHFDRHILSNIRSLQEDLELLDEIVRQDYEFVYGGGRFSVAKW 240

Query: 256 ILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
             ++ S    ++LR      G G  S       ERV++     +   +  G V + R + 
Sbjct: 241 R-DLGSRRRRHVLRHFVLQHGLGTPSQSSISDFERVLMESDKAE-WKLPAGTVYLYRGSL 298

Query: 315 F 315
           F
Sbjct: 299 F 299


>gi|167751544|ref|ZP_02423671.1| hypothetical protein EUBSIR_02545 [Eubacterium siraeum DSM 15702]
 gi|167655352|gb|EDR99481.1| hypothetical protein EUBSIR_02545 [Eubacterium siraeum DSM 15702]
          Length = 324

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 128/314 (40%), Gaps = 26/314 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
               ++ AVSGG+DS+ LL  L+S+  +  F     +A  V+H LR E +  + R+V  +
Sbjct: 22  KGDTVIAAVSGGADSVALLYVLYSLKDELGF---SLAACHVNHNLRGEESDSDERFVRRM 78

Query: 77  CSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           C  L I     S K +   +    L   AR  RY      +K     LI TAHT  D  E
Sbjct: 79  CRFLDIPLYTASIKVNDLRQKHDSLEECARRLRYDFFESISK---GRLIATAHTASDNCE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G  LSG+C       N  I RP L   REDI  +  +  + +  D +
Sbjct: 136 TILINMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDST 188

Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N  D + R ++R  V  +      +L+  + +        +  +  +  + +     +  
Sbjct: 189 NLSDDYTRNKIRHKVVPLLKEINPSLFSAISRLSQSVSDDDRYLDKIASELMEKARTADN 248

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR---V 307
                IL      +    R+   I       P  +++E  +  +++G +G ++  +   V
Sbjct: 249 KYDVGILRTADECILR--RIVTMIFKDNDIPPNMKAVESCVGIIRAG-QGKINPCQFRFV 305

Query: 308 VIDRRANFLWITRA 321
            I ++  F+   R 
Sbjct: 306 QIRKKKLFVVTDRE 319


>gi|157376277|ref|YP_001474877.1| tRNA(Ile)-lysidine synthetase [Shewanella sediminis HAW-EB3]
 gi|157318651|gb|ABV37749.1| tRNA(Ile)-lysidine synthetase [Shewanella sediminis HAW-EB3]
          Length = 494

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 135/339 (39%), Gaps = 25/339 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S+   + +++A SGG DS  L   L S    R   + ++  + V H L   A   VR+  
Sbjct: 24  SVGSGSQLVLAYSGGVDSEVLAQGLASFA--RHNPQYRYLLVHVHHGLSSNADAWVRHCQ 81

Query: 75  DVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              ++ ++   +   K    P+  + A AR ARY  I+          ++TAH  DDQLE
Sbjct: 82  SQAAKYQLPIEIRQVKVKMGPRLSIEAQARSARYEAITSLMAP--GDALLTAHHLDDQLE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV +  +R    KG  LS M +   +D N  + RP L   RE I S    + I+  ED S
Sbjct: 140 TVLLALKRGLGPKG--LSAMGEVQAFDNNKQLLRPLLSISREQIESLATSQAIAHIEDES 197

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-I 252
           N D +++R  +R  +    L A +  +         +      +I + ++  + S I  +
Sbjct: 198 NQDTKYDRNFLRLEIIP-KLKARWSSIAVTASRSAALCAQQQAVIDEEVSKRLPSYIVPV 256

Query: 253 SQ---------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRG 300
           SQ         D+          LLR      G   +      +E+V   +L  +   + 
Sbjct: 257 SQGNGTALELSDLREQGVNWQLLLLRGYIEYLG--FAPLSQVQLEQVLYQLLDARVDAKV 314

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD 339
            + +G  ++ R     +++         I  P     WD
Sbjct: 315 ELRLGDTLVRRFRGRAYLSSVEAEHAERINAP--ILEWD 351


>gi|294140020|ref|YP_003555998.1| tRNA(Ile)-lysidine synthase [Shewanella violacea DSS12]
 gi|293326489|dbj|BAJ01220.1| tRNA(Ile)-lysidine synthase [Shewanella violacea DSS12]
          Length = 467

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 125/311 (40%), Gaps = 17/311 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A +++A SGG DS  L + L      R   + ++  + V H L + A   V +     
Sbjct: 27  PGAKLVLAYSGGVDSELLALGLSEFA--RQHHEYRYLLVHVHHGLSDNADAWVGHCESRA 84

Query: 78  SRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +   +  S+        P+  + A AR ARY  I           ++TAH  DDQLETV 
Sbjct: 85  TVYGLPISIKRVVVDTGPRKSVEAEARNARYNAIKSQMAP--GDALLTAHHLDDQLETVL 142

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R    KG  LS M  + ++  +  + RP L   RE I +      +    D SN+D
Sbjct: 143 LALKRGLGPKG--LSAMGSSQVFGKDKQLIRPLLSISREQIEAKASAVGLVHINDESNSD 200

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           D+++R  +R  +    L A +  +         +      +I   ++  + + I+ SQ  
Sbjct: 201 DKYDRNFLRLEIIPR-LKARWGAIATTASRSALLCAQQQAVIDDEVSERLPAFISFSQGR 259

Query: 257 LNIDSTLL------FYLLRVSAAICGGQISLPGYRSMER---VMLFLKSGKRGCVSIGRV 307
            ++D  LL      +  L     I     + P    + +    +L  +   +  + +G +
Sbjct: 260 YSLDLGLLGLQSDNWQSLLFRGFIEQLGFAPPSQTQLAQSLSQLLTARQDAKVELRLGDL 319

Query: 308 VIDRRANFLWI 318
           +I R     ++
Sbjct: 320 LIRRYQGRAYL 330


>gi|295401968|ref|ZP_06811930.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109215|ref|YP_003987531.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1]
 gi|294975970|gb|EFG51586.1| tRNA(Ile)-lysidine synthetase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214316|gb|ADP72920.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. Y4.1MC1]
          Length = 462

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 136/360 (37%), Gaps = 34/360 (9%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I  V  F++    L   + ++V VSGG DS+ LL   H   S R    I   A  VDH  
Sbjct: 2   IAEVCEFIKKHELLTPDSTVIVGVSGGPDSLALL---HFFWSIRQKWNITLIAAHVDHMF 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +++++ +V   C    I        V     + + G+  AAR+ RY    E  +  
Sbjct: 59  RGKQSEEDMNFVKHFCQTRGIICEAAQIDVPAFQRQHKLGVQEAARQCRYRFFGELMEKY 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    KG   +G+     +    +I RPFL   R  I
Sbjct: 119 KADYLALGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFH-GGYIIRPFLAISRAHI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----V 230
            ++  +  I+   D SN  D + R R R  V      +   L+ + + + ++ ++    +
Sbjct: 176 DAYCEKHQITPRHDASNDKDDYTRNRFRHHVIPFLKKENPRLHERFQSYSEMAIEDELFL 235

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ-ISLPGYRSMER 289
                  I K +     +I    +    +   L    +++       +  S      +  
Sbjct: 236 EELAEDAIKKVIKKQEDAIALKIKPFQAMPKPLQRRGIQLILNYLYKEIPSSLSSVHIHN 295

Query: 290 VMLFLKSGK-RGCVSI--GRVVIDRRANFLWITRAVR---------NLPTLILYPEETTV 337
           ++ FL      G + +  G  V+      L   R  +         ++P ++  P    +
Sbjct: 296 LLAFLSRSHPSGRLDLPHGLKVVRSYDCCLLTFRKEKEDVSYAFKLDIPAVLPLPNNHVI 355


>gi|309389977|gb|ADO77857.1| tRNA(Ile)-lysidine synthetase [Halanaerobium praevalens DSM 2228]
          Length = 464

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 129/330 (39%), Gaps = 25/330 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              + F++    L+  + IL+AVSGG DS+ +L     +  +    KI+ +   +DH  R
Sbjct: 3   ARFKEFIQKNNLLLNSSRILLAVSGGPDSLAMLDLFDKLKEEL---KIEIAVAHLDHMFR 59

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINA 119
           + +K E  ++     +  I          +     +    AAAR+ R+          N 
Sbjct: 60  KESKSEADFIERFAKKRGIQFFSKRVNLPQIIKTNKVSAEAAARQERFTFFKNIIAKENF 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            L+  AH   DQ ETV +   R    KG+G   +         L +  P L   +++I +
Sbjct: 120 DLLALAHHKGDQAETVLLNLFRGCGLKGLGGIELQAKF---KELELIHPMLIFTKKEILA 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +  Q+ +S   D SN ++ + R  +R  +  +    +  K+K+      K+  + A  + 
Sbjct: 177 YCQQQKLSPSFDSSNQENIYSRNIIRNEILPLIEKKINPKVKEVIAKNSKLIASEAEFLE 236

Query: 240 KYLTVHMRS---------IIAISQDILNIDSTLLFYLLRVSAAICGGQ---ISLPGYRSM 287
           K      +          II     +L +D  +   + R            + L     +
Sbjct: 237 KLAKKKYKELLVKEKSTKIIIDFNSLLALDQVIQRRIYRQIYKRLNNNLDDLYLEHIFEI 296

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
           E+++   K+G+   ++ G  V    +N ++
Sbjct: 297 EKLIADKKTGRGVDIASGIRVEISYSNLIF 326


>gi|319790338|ref|YP_004151971.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1]
 gi|317114840|gb|ADU97330.1| tRNA(Ile)-lysidine synthetase [Thermovibrio ammonificans HB-1]
          Length = 443

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 66/332 (19%), Positives = 127/332 (38%), Gaps = 24/332 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF   + S       +   + +LVA+SGG DS+ LL  L  +  +        +A+ V+H
Sbjct: 1   MFKEKVLSTCQKFNLIPPGSKLLVALSGGPDSVALLNVLLELRGELQLS--SLAAVHVNH 58

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            LR   ++ + R+V ++C +L +         +    G+ AAAR+ RY +     +    
Sbjct: 59  QLRGAESERDERFVKELCGQLGVPLFTERVTVNPKGKGVEAAARQERYRVFDRVLRLWKG 118

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +   HT  D  ETV +   +    +G+                  RP     R ++  
Sbjct: 119 DYVALGHTASDLAETVLLNLAKGTGIRGL-------RGFLPKRDRYVRPLFEVTRREVEE 171

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNN 232
           +L  + + +  D SN    FER  +R       R +      ++       + +   +N+
Sbjct: 172 YLELKGLPYIVDSSNLSTDFERNLIRIEVVPRLRRLNPRFEESVLRLTSTLRGIEFFLNS 231

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            V  L+ ++         A  +++L +   L   LL  +     G+     +R +E+ + 
Sbjct: 232 QVEALLERFTA--GGHFCAPLEELLKLPEVLQGELLIGAVKRLTGK--GLSFRKVEKCLE 287

Query: 293 FLKSGKRGCVSIGR---VVIDRRANFLWITRA 321
            +K G     S+G     V+D     +   + 
Sbjct: 288 LIKKGSFARYSLGNGLTFVVDAGRACILPEQE 319


>gi|229825875|ref|ZP_04451944.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC
           49176]
 gi|229789895|gb|EEP26009.1| hypothetical protein GCWU000182_01239 [Abiotrophia defectiva ATCC
           49176]
          Length = 477

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 112/291 (38%), Gaps = 25/291 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  I+ ++  ++    L     I+  VSGG+DS+ LL+ L  +L+          A+ ++
Sbjct: 14  MDSIDRIKKLIKENKLLHENEKIVAGVSGGADSVCLLLVLKDILN-----PENIVAVHIN 68

Query: 60  HCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHA 114
           H +R E A  +  +V  +C +  I   +    +   + K +     A R  RY +  E  
Sbjct: 69  HGIRGEEAARDEEFVKKLCEKYNICLEIRHLSIPEYSKKHKISEEEAGRILRYEVFEEIR 128

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  NA  I  AH  +D  ET  +   R     G+       T +   N  I RP ++  R
Sbjct: 129 QEKNADKIAVAHNMNDTAETFLLNLSRGSGITGL-------TGIKISNSRIIRPLIKTSR 181

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
           ++I         ++  D +N    + R R+R  V           ++   +   K+    
Sbjct: 182 DEIEKIAEYYGEAFITDSTNNSLIYARNRIRNKVLPELSQVNEQAVRHINEAADKLGKIE 241

Query: 235 AMLIPKYLT-----VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
             L+ +        V  +  + I   I  ID+ L+  +L  +     G+  
Sbjct: 242 GYLLRESEKAYKKYVDAKETLLIKNAITEIDAVLIEEVLHRALTEVAGKAR 292


>gi|195953926|ref|YP_002122216.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1]
 gi|195933538|gb|ACG58238.1| tRNA(Ile)-lysidine synthetase [Hydrogenobaculum sp. Y04AAS1]
          Length = 306

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 13/271 (4%)

Query: 1   MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +     E+ + F  +L+     IL+  SGG DSM L   ++ +   +    I+      +
Sbjct: 3   LARKIFEANKLF--NLIEKGDKILIGFSGGVDSMVLSCLMYKL---KDALGIEIGLAHFN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H LRE A ++  +  D    L++   V S+     +  +   AR+ RY  + + +K    
Sbjct: 58  HHLREDADEDEAFCIDFAKSLKLPIYVESFDIKSLKGNIEENARKKRYEFLQKTSKKEGY 117

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I TAH  DD  ET+ +   R       GL G+     Y  N  I RP +   +++IR+
Sbjct: 118 NKIATAHHLDDLAETMILWFVRGG-----GLKGLSGFKAYKEN--IIRPLITATKDEIRA 170

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           F  +++++W ED +N D+   R  +R  V  I        +       + + +  A L  
Sbjct: 171 FAKEQHLNWKEDYTNYDETISRNLIRHKVIPILKTINPNFLSTVLQESIILQDEEAFLED 230

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
               V     +   + +      +   ++R 
Sbjct: 231 YTEHVIKNIDVFDVKSLKQEPRAIQRRIVRK 261


>gi|254825867|ref|ZP_05230868.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
           J1-194]
 gi|255521743|ref|ZP_05388980.1| hypothetical protein LmonocFSL_11047 [Listeria monocytogenes FSL
           J1-175]
 gi|293595106|gb|EFG02867.1| hypoxanthine phosphoribosyltransferase [Listeria monocytogenes FSL
           J1-194]
          Length = 648

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 63/266 (23%), Positives = 102/266 (38%), Gaps = 17/266 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A +    V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHINHHLRENAANGQNVVEAFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I   +            Q G+   AR  RY    +         +  AH  DDQ+E
Sbjct: 77  ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSA 272
           +    +  +  N  + L    + +  
Sbjct: 254 KRTTLLLTNFKNEANPLQRRAIHLLL 279


>gi|260576641|ref|ZP_05844628.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2]
 gi|259021126|gb|EEW24435.1| tRNA(Ile)-lysidine synthetase [Rhodobacter sp. SW2]
          Length = 422

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 156/396 (39%), Gaps = 21/396 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA + +AVSGG DSM LL    +         +   A++VDH LR  +  E   V+  C+
Sbjct: 30  PAVLGLAVSGGGDSMALLHLAVA-------AGLPCRAVTVDHGLRAESAAEAAGVARACA 82

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L + H  + W+    +  L   AR ARYALI+E A       +   H  DD  ET+ +R
Sbjct: 83  ALAVPHDTLRWQGWDGRGNLQDQARRARYALIAEWALAHGIAAVALGHNRDDVAETLLLR 142

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G+              +   RP L   R ++R +L  R + W +DPSN + R
Sbjct: 143 LARGAGVDGLAAM---AARRRHQGVNWLRPLLEIGRGELRDWLAGRGVVWVDDPSNDNAR 199

Query: 199 FERVRVRRFVRDIDL-----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           F+RVR+R+    +         L         +R  +         KY  +    ++   
Sbjct: 200 FDRVRLRQAAGTLAALGLTTERLAEVAGHLAQVRAALEVQTRDAARKYARIEAGDVVIDP 259

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
             + ++   +   LL  +          P   ++   +  L++G+   +   R+++    
Sbjct: 260 AALHDLPEEIARRLLASALIRVSSAEYGPRGPALAAALAKLRAGRPATLLGCRMLLRPE- 318

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIA 373
             L + R  + +   +   +   +WDGR++      + +++                   
Sbjct: 319 -GLRVLREWQAVRDHVTTAD--ALWDGRWRVYGPEINGLELRALGAAGLARCPDWRATGV 375

Query: 374 QRA--LSSMPSKEGGKPLLAPFSRFMTKFDLPVAYA 407
            RA  L+S+ +  G + L AP + F   +   +A A
Sbjct: 376 PRASLLASVSAWRGAELLAAPLAGFGLGWRAEIAPA 411


>gi|304415319|ref|ZP_07396004.1| putative ATPase of the PP-loop superfamily [Candidatus Regiella
           insecticola LSR1]
 gi|304282837|gb|EFL91315.1| putative ATPase of the PP-loop superfamily [Candidatus Regiella
           insecticola LSR1]
          Length = 424

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 126/306 (41%), Gaps = 23/306 (7%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
             SGG DS   L+ L + L       +   AI + H +   A D V +    C + ++  
Sbjct: 2   GFSGGLDSSV-LLHLLTRLRTGQRPDLIIRAIHIHHGINPQANDWVEHCQYQCQQWQVPL 60

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            +V  + +  + G+ AAAR ARY   S H    +  +++TA   DDQ ET  +  +R   
Sbjct: 61  EIVPVQLNTRKNGIEAAARAARYHAFSTHL--TDKEVLLTAQHQDDQCETFLLALKRGSG 118

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
               GLS M   + +  +  + RP L C R+++  +  +  I W ED SN D RF+R  +
Sbjct: 119 P--TGLSAMASKMAFAQS-QLLRPLLSCSRQNLMDYAQRHQIQWVEDESNQDRRFDRNFL 175

Query: 205 RRFVRDIDLHALYLKMKKFQD---LRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDI 256
           R+ +  +    L  +   F         +      L+ + LT  +              +
Sbjct: 176 RQEIIPL----LNQRWPHFSQTVTRSASLCAEQEQLLDELLTATLDQWQHTDGSLTTDGL 231

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRA 313
           + +       +LR    +    +S+P    ++R+    +  +     C+ +G+  + R  
Sbjct: 232 ITMSEVKRNAVLRRW--LSRHHVSMPSRDQLQRLWHEVVLARIDANPCLQLGQHQVRRFR 289

Query: 314 NFLWIT 319
             L+++
Sbjct: 290 QRLYLS 295


>gi|298505922|gb|ADI84645.1| tRNA(Ile) lysidine-34 synthase, putative [Geobacter sulfurreducens
           KN400]
          Length = 471

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 155/390 (39%), Gaps = 36/390 (9%)

Query: 3   LSPIESVRFFVRSL-------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           LSP+++V   VR+             ++VAVSGG+DS+ L+  L S+   R    +    
Sbjct: 4   LSPVDAVLKKVRAFNAEHGMFRPGDRVVVAVSGGADSVALVDILVSLNELR----LDLVV 59

Query: 56  ISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALI 110
             ++H LR   + ++ R+V        +        V       +  L  A R ARYA  
Sbjct: 60  AHLNHKLRGAASDEDERFVEQCAQTYALPFVSRGEQVKALAEWERLSLEDAGRRARYAFF 119

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A    A  +  AH  DDQ ET+ MR  R     G+GLS M             RP L
Sbjct: 120 DDVAAACGARTVALAHHADDQAETLLMRLVRGAG--GLGLSAMQ---PVGAGGKYVRPLL 174

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKF 223
              R++I ++L  R +++ +D SNTD  F R R+R         +       L    +  
Sbjct: 175 ALGRQEIEAYLDARGLAFRQDQSNTDVAFLRNRIRHELVPYLGRLNPGAASRLARTAELL 234

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLP 282
            D    ++  V   + +++ V  +     S D +      L   L R + A+  G ++  
Sbjct: 235 ADDEALLSRLVEEALRRHVMVTEQGGAICSVDTLRREPRGLRRRLYRKAIALAKGDLARI 294

Query: 283 GYRSMERV-MLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340
            +  ++ +  L L     G + +   +++ R  N +   R + ++P+L     +     G
Sbjct: 295 SFDHVDAIDRLVLSENPSGRLHLPEEILVTRSYNEVAFARRMADIPSLQELWIDG---PG 351

Query: 341 RYQFQNLSDSLIQI--GPQSYRKADVPSGI 368
            +      + +++I  GP  + +       
Sbjct: 352 CWPLSGGGELVVEIATGPPPWGELSTTESW 381


>gi|33519753|ref|NP_878585.1| cell cycle protein MesJ [Candidatus Blochmannia floridanus]
 gi|61216604|sp|Q7VRC9|TILS_BLOFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33504098|emb|CAD83359.1| cell cycle protein MesJ [Candidatus Blochmannia floridanus]
          Length = 531

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 30/329 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG--------KIKFSAISVDHCLRE 64
           +R +V   ++L+A SGG DS  LL  L  +     F              A+ V H L  
Sbjct: 18  IRCIVKYRNLLLAYSGGMDSTVLLDILTKLKKYFDFQVKGTSKILPFFLRAVYVHHGLNN 77

Query: 65  TAKDEVRYVSDVCSRLRIAHSVV---SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            A     +    C    +   ++       SK +  + A AR+ RY  +    K     +
Sbjct: 78  KADYWADHCLQQCKMRNVPFHIIYINHSDLSKIKCNIEAMARDFRYKALFNALKPE--EV 135

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIR 178
           ++TAH  +DQ+ETV +  +R       GLSGM   ILY  N     + RP L+C    ++
Sbjct: 136 LLTAHHMNDQVETVLLALKRGSGP--AGLSGMTQDILYQHNEYQHRLLRPLLKCSHIQLQ 193

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +  ++ ++W ED +NTD RF+R  +R  V  +     +    K      ++      L+
Sbjct: 194 EYAYRKKLTWVEDDTNTDVRFDRNFLRVQVIPL-FQKRWPAFNKVVSRTAQLCREQENLL 252

Query: 239 PKYLTVHMRSIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-- 291
            + L+  +  +I I   +               +LR   +     I++P Y+ ++ +   
Sbjct: 253 HELLSESLDQLIDIDNALFFYPLIKYSDVRRRVVLRYWLSRF--FINMPSYKLLDCIWKE 310

Query: 292 -LFLKSGKRGCVSIGRVVI-DRRANFLWI 318
               K   +  + +G+  I  R    L+I
Sbjct: 311 VALSKVDSQSILHVGKKYICRRFRKKLYI 339


>gi|260893891|ref|YP_003239988.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4]
 gi|260866032|gb|ACX53138.1| tRNA(Ile)-lysidine synthetase [Ammonifex degensii KC4]
          Length = 471

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 121/317 (38%), Gaps = 22/317 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L     ++V VSGG DS+ LL  L+ +  D+    +      + H LR  A +E   V
Sbjct: 15  RMLFPGDKVVVGVSGGPDSVALLDLLYRLREDKE---LSLYVAHLHHGLRAEADEEAAMV 71

Query: 74  SDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           S++  R  +   +      K     +  +  AARE RY  + E A  + A  I   H  D
Sbjct: 72  SELARRYGLPFFLDRVDVKKHAQQNKLSIETAARELRYRFLLEVAGEVGANRIALGHQAD 131

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV +   R     G+         +  +     RP LR RR +I ++   R +S C
Sbjct: 132 DQAETVLLHLLRGTGLSGL-------RGIPPVRGPFIRPLLRVRRAEIEAYCQWRGLSPC 184

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            D SN    + R R+R  +  +        + +      ++       + K      R +
Sbjct: 185 LDLSNWSLEYTRNRIRHQLLPLLAREFNPSIVEVLCRLAEIAREEDEFLEKEAGKAYREL 244

Query: 250 IAISQDIL--------NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
              +++ L         +   L   ++R++     G+     +    R  L+  +GK   
Sbjct: 245 RREAEEGLGLALEPLKTLPLALARRVVRLAYRELVGEELPFEHVEAVRQWLYRPTGKELS 304

Query: 302 VSIGRVVIDRRANFLWI 318
           +     V+    + +++
Sbjct: 305 LPKNVKVVREYDSLVFL 321


>gi|90407914|ref|ZP_01216089.1| mesJ protein [Psychromonas sp. CNPT3]
 gi|90311005|gb|EAS39115.1| mesJ protein [Psychromonas sp. CNPT3]
          Length = 441

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 155/395 (39%), Gaps = 35/395 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DS+ LL     + + +        A  V H L   A D + + S +C  L + 
Sbjct: 26  IALSGGMDSVVLLHLFSRLHNGK------VMAHHVHHGLSAHADDWLLFCSTLCKALNVD 79

Query: 84  HSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                   + K ++ L A ARE RY  + E+A     T ++TAH  DDQLE++ +  +R 
Sbjct: 80  FCATRVHLDKKNRSSLEAVAREHRYKALQENASVT--TCLVTAHHQDDQLESILLALKRG 137

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G+        +   +   + RP L   R+ I  +    +++W ED SN D RF+R 
Sbjct: 138 AGLTGLQGVLATQKLPKGM---LIRPLLDVSRQQIEDYAALFSLAWIEDESNQDQRFDRN 194

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA--ISQDILNID 260
            +R  +  + L A +  + K          A   LI +   V  +  I   ++  +LNI 
Sbjct: 195 FIRHSITPL-LKARWPSIAKTAARSALHCQAQQTLIDELTEVDFKLCIRRLLNDAVLNIS 253

Query: 261 STLLFYLLRVSAAICGG----QISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRA 313
           +       R S  +       +++ P  + +  +   +     G    ++   + + R  
Sbjct: 254 ALKALTATRRSNVLRQWFKSVELAYPSTKQLIALWHDIALCDEGACPKMNFKSMSVRRYQ 313

Query: 314 NFLWITRAVRNL--PTLILYPEETT--VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIP 369
           + L+     +      + ++  E    +  G+ Q + +S +      Q   +      +P
Sbjct: 314 DDLYFVDEQKMQIEKEVCVWKGEDILFLCAGKLQIK-ISANAGFTAKQHCVEIRFRQHLP 372

Query: 370 PIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404
                 +LS  P        +    + + +++LP 
Sbjct: 373 A-----SLSCQPIHRYASRSI---KKLLHEYNLPP 399


>gi|39996909|ref|NP_952860.1| cell cycle protein MesJ [Geobacter sulfurreducens PCA]
 gi|61216575|sp|Q74C65|TILS_GEOSL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|39983797|gb|AAR35187.1| cell cycle protein MesJ, putative [Geobacter sulfurreducens PCA]
          Length = 471

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 155/390 (39%), Gaps = 36/390 (9%)

Query: 3   LSPIESVRFFVRSL-------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           LSP+++V   VR+             ++VAVSGG+DS+ L+  L S+   R    +    
Sbjct: 4   LSPVDAVLKKVRAFNAEHGMFRPGDRVVVAVSGGADSVALVDILVSLNELR----LDLVV 59

Query: 56  ISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALI 110
             ++H LR   + ++ R+V        +        V       +  L  A R ARYA  
Sbjct: 60  AHLNHKLRGAASDEDERFVEQCAQTYALPFVSRGEQVKALAEWERLSLEDAGRRARYAFF 119

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A    A  +  AH  DDQ ET+ MR  R     G+GLS M             RP L
Sbjct: 120 DDVAAACGARTVALAHHADDQAETLLMRLVRGAG--GLGLSAMQ---PVGAGGKYVRPLL 174

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKF 223
              R++I ++L  R +++ +D SNTD  F R R+R         +       L    +  
Sbjct: 175 ALGRQEIEAYLDARGLAFRQDQSNTDVAFLRNRIRHELVPYLGRLNPGAASRLARTAELL 234

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLP 282
            D    ++  V   + +++ V  +     S D +      L   L R + A+  G ++  
Sbjct: 235 ADDEALLSRLVEEALRRHVMVTEQGGAICSVDTLRREPRGLRRRLYRKAIALAKGDLARI 294

Query: 283 GYRSMERV-MLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340
            +  ++ +  L L     G + +   +++ R  N +   R + ++P+L     +     G
Sbjct: 295 SFDHVDAIDRLVLSENPSGRLHLPEEILVTRSYNEVAFARRMADIPSLQELWIDG---PG 351

Query: 341 RYQFQNLSDSLIQI--GPQSYRKADVPSGI 368
            +      + +++I  GP  + +       
Sbjct: 352 CWPLSGGGELVVEIATGPPPWGELSTTESW 381


>gi|114048184|ref|YP_738734.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-7]
 gi|113889626|gb|ABI43677.1| tRNA(Ile)-lysidine synthetase [Shewanella sp. MR-7]
          Length = 465

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 130/333 (39%), Gaps = 21/333 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LS   +       L   + +++A SGG DS  L   L            +   I V H
Sbjct: 4   MELSAHIARFLASLPLQTGSKLVLAYSGGVDSEVLAYGLSEFAKHHPELHYQL--IYVHH 61

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119
            L   A    ++     +   +  +V   + +  P+  + A AR  RY  I +H K    
Sbjct: 62  GLSPNADAWAKHCQTRAASYGLPITVERVQLTLGPRVSVEAEARRMRYQAILQHLKPQ-- 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS--RPFLRCRREDI 177
            +++TAH  DDQLET+ +  +R    KG+   G    +           RP L   RE I
Sbjct: 120 DVLLTAHHEDDQLETILLALKRGQGPKGLAAMGQIQMLSLGEKGTCLQARPLLDISREQI 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             F   R +   ED SN DD+++R  +R  +    L A +  +        ++      +
Sbjct: 180 EVFAQTRQLVHIEDESNQDDKYDRNFLRLEIIPR-LKARWPSIATTASRSAQLCAEQQAI 238

Query: 238 IPKYLTVHMRSIIAISQ---------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
           +   ++  +  ++  +          D L+  ++  +  L +   I     +LP Y  ++
Sbjct: 239 VDAEVSERLPRLLTEAPITQQLVLKLDALSTQTSE-WQGLLLRGFIESQGFALPSYVQLQ 297

Query: 289 RVMLF---LKSGKRGCVSIGRVVIDRRANFLWI 318
           +++      K   +  + IG  V+ R A  L++
Sbjct: 298 QILQQLMGAKEDAKVQLQIGDCVLRRFAGMLYL 330


>gi|301062530|ref|ZP_07203173.1| tRNA(Ile)-lysidine synthetase [delta proteobacterium NaphS2]
 gi|300443387|gb|EFK07509.1| tRNA(Ile)-lysidine synthetase [delta proteobacterium NaphS2]
          Length = 478

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 127/348 (36%), Gaps = 22/348 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  IE   +    L     +LVAVSGG DS+ LL  L  +    S   +       DH L
Sbjct: 5   IKRIEKTIYRFNMLDSEDRVLVAVSGGPDSVVLLDLLSRLKDALS---LTLVVAHFDHGL 61

Query: 63  RETAKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINA 119
           R    + E R+V+ +   + +        +     G+     AR+ RY  +        A
Sbjct: 62  RPRDDEGETRFVAALADAMNLPFVTEKALSPPGGNGISLEEEARDLRYEFLYGAKAAHGA 121

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I   HT DDQ ETV MR  R       GLSG+      D    I RP +   R +I  
Sbjct: 122 HKIALGHTLDDQAETVLMRLLRGSGP--TGLSGIPPVRHPD----IIRPLIEVTRLEIER 175

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNN 232
           +L  RN+    DPSN + +  R R+R  +           +  L    +   +    +  
Sbjct: 176 YLAHRNLKHITDPSNFEKQHLRNRIRLELLPQLKTYQPGIVRILGQTAEIMGNENRWMEK 235

Query: 233 AVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
                I   +TV      ++  +D   +   L   ++R       G +     R ++ V 
Sbjct: 236 EAMGWIEGAVTVSETGDNSVPLEDFGKLAPALQSRVIRRIIRRLQGGLRRIHLRHIDAVK 295

Query: 292 LFLKSGKRGCVSI--GRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
              +   +  +++  G VVI      L+  R+      L +  E   V
Sbjct: 296 GLTRGRPQKRLNLPNGVVVIRTYDTLLFTQRSEEEHKELHITLEGPGV 343


>gi|331087219|ref|ZP_08336289.1| hypothetical protein HMPREF0987_02592 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408905|gb|EGG88366.1| hypothetical protein HMPREF0987_02592 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 505

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 18/264 (6%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             VR ++   R       ++  +SGG+DS+ L   LH +  +     +K  A+ V+H +R
Sbjct: 20  ARVRAYIQEHRMFERGETVITGISGGADSVCLFFILHYLQEELG---VKLVAVHVNHGIR 76

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
            E A  + R+V ++C    I   +V         K +  +  A R  R       A+   
Sbjct: 77  GEDADADERFVQNICKTAGIPLEIVRCNLELIAKKRKQSMEEAGRNIRREAFERAAQKYG 136

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I  AH  +D  ET+ M   R     GM       T +  +     RP L   R +I 
Sbjct: 137 AAKIALAHHKNDNAETLLMNLVRGTGLNGM-------TGIKPVRDRYVRPLLCLERREIE 189

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            FL Q  I +  D +N  + + R ++R  V     + +  +         +    V   +
Sbjct: 190 GFLEQNGIRYQTDQTNLTEDYTRNKIRNRVIPYMENQINPRAAAHLSEAAEQLRGVQEFL 249

Query: 239 PKYLTVHMRSIIAISQDILNIDST 262
            K L V   + ++   + L I + 
Sbjct: 250 EKQLKVFKENCVSRKGEKLLIRTE 273


>gi|307825179|ref|ZP_07655399.1| tRNA(Ile)-lysidine synthetase [Methylobacter tundripaludum SV96]
 gi|307733635|gb|EFO04492.1| tRNA(Ile)-lysidine synthetase [Methylobacter tundripaludum SV96]
          Length = 451

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 145/383 (37%), Gaps = 36/383 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
              +A SGG DS  LL    S+    +  K K +A+ V H L+  A+   ++       +
Sbjct: 33  RFYIAYSGGVDSHVLLHCCASI----THLKDKLTAVYVHHGLQAEAESWAKHCEKTAKDV 88

Query: 81  RIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +    +    N+ P      AAR ARYA +    K  +A  ++ A   +DQLETV ++ 
Sbjct: 89  GVEFLTLRVNANAAPGESPEEAARNARYAALKSLIKADDA--LLLAQHREDQLETVLLQL 146

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G  LSGM + + +   + + RP L   ++ I  +     +SW EDPSN  + +
Sbjct: 147 FRGSGLRG--LSGMSERMAFGAGVML-RPLLNTPKQAISDYAHAHQLSWVEDPSNQSNDY 203

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
           +R  +R  V  + L   +  + K      K      +L+ +       ++       L+I
Sbjct: 204 DRNFLRNAVVPL-LKQRWSAIDKTVARSAKHCADAQVLVDEVADELFGAVFNPVDKTLSI 262

Query: 260 ------DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC---VSIGRVVID 310
                  S     ++R      G  + +P    +ER++  + +        +S     I 
Sbjct: 263 SRLSEHHSHPQQLIVRHWFRHRG--LKMPAQAKVERILNEVVAAAGHRDPVLSGQGYSIR 320

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-ADVPSGIP 369
           R  + L+    +           +  VW        +  + I+I             GI 
Sbjct: 321 RYRDKLYCLTNLSGTEP------QDRVWP-------VGQASIKITDDRTLSCVPSSKGIS 367

Query: 370 PIIAQRALSSMPSKEGGKPLLAP 392
               Q A   +  + GG+ +  P
Sbjct: 368 RERWQDATVEVRFRRGGEKIRLP 390


>gi|332981200|ref|YP_004462641.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON]
 gi|332698878|gb|AEE95819.1| tRNA(Ile)-lysidine synthetase [Mahella australiensis 50-1 BON]
          Length = 475

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 124/334 (37%), Gaps = 28/334 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           S    V  ++R    +     I+V VSGG DS  LL  L S+   R     +     V+H
Sbjct: 9   SVQNRVMLYIRKYKMIQPGQKIVVGVSGGPDSSALLHVLMSL---RGKLDAELIVAHVEH 65

Query: 61  CLRET-AKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R   + ++ +YV  +  R+     + H  V     +       A R  RY    +  +
Sbjct: 66  GMRAQQSVEDAQYVVSMAQRMGLSVYVKHCDVPSYAKEHGLSQEQAGRIIRYDFFRQICR 125

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 I  AH  DD  ET+ +   R     G+         +  +   I RP L   R 
Sbjct: 126 YRGCNSIAVAHNKDDNAETILLHILRGSGLDGL-------VGIRPVRGDIIRPLLDVSRT 178

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVN 231
           DI ++     ++   D +N D  + R R+R     F+       +   + +   +    N
Sbjct: 179 DIEAYCAAAGMNPRRDYTNNDPSYMRNRIRLKLIPFLSQNFNPNIVDSLVRMSHILSDDN 238

Query: 232 NAVAMLIPKYLT--VHMRSIIAI--SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             ++M + +     VH+   IA+    D   +   L   LLR   +   G      Y  +
Sbjct: 239 EFLSMCVEEAFKRSVHIDDDIAVLHIPDFKTLHKALQRRLLRYIISKLKGDADSIEYLHI 298

Query: 288 ERVMLFLKSG--KRGCVSIGRVVIDRRANFLWIT 319
           E++M +++ G   +       ++ +   + ++I 
Sbjct: 299 EQLMAYIEQGCVGQKLTLPADIMAEHGNDKVYIY 332


>gi|251794097|ref|YP_003008828.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
 gi|247541723|gb|ACS98741.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. JDR-2]
          Length = 475

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 147/414 (35%), Gaps = 25/414 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L+ +   R   +       I+ AVSGG DSM LL  L          ++   A  V+H 
Sbjct: 8   LLTDMMKYRATEQLWSKGDRIVAAVSGGPDSMALLHLLWQAARQ---EQLTVIAAHVNHG 64

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKT 116
            R + ++ E   V     +L +   ++         +      +AARE RYA + E A  
Sbjct: 65  FRKDASRQEAEVVRQYAEKLGVPFEMIELDMPAYIEETGINAQSAAREKRYAFLHETAVK 124

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A+ I  AH  DDQ ETV MR  R       GL+GM      + N+ + RP LR  + D
Sbjct: 125 YGASAIALAHHADDQAETVLMRVIRGAGL--TGLAGMAPKR-KEKNVELIRPLLRMNKSD 181

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNA 233
           I  +  +R++ +C D SN +  + R  VR  V          L   +++  D+    ++ 
Sbjct: 182 IVRYCSERDVPYCLDSSNNERYYFRNVVRLDVIPYLSQFNPQLNHSLRRIADVAGAEDDW 241

Query: 234 VAM----LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
           + +    L    +T+        + +++ +   L   L+++          +  + ++E 
Sbjct: 242 MELEGQRLFTSLVTLSPDECKLNAGELIGLHVALQRRLIKLILNYLSKDAEIASFDAIET 301

Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349
           + L                     + +   R   ++  + +     T  D  Y F    D
Sbjct: 302 MRLAAAPAAPSTWRYD------AGSGVRCIREYSSIRWVRVLNASGTSEDS-YAFSISGD 354

Query: 350 SLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
           S         R   +         + A  S    +  + +     R     D  
Sbjct: 355 SKSAFITAGGRALHIERLKRGEAVKPAGRSEVCFDADRLVFPLMVRNRQPGDRI 408


>gi|302672259|ref|YP_003832219.1| tRNA(Ile)-lysidine synthetase TilS [Butyrivibrio proteoclasticus
           B316]
 gi|302396732|gb|ADL35637.1| tRNA(Ile)-lysidine synthetase TilS [Butyrivibrio proteoclasticus
           B316]
          Length = 475

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 18/249 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             V  F+R+   +   + +L   SGG+DS  L++ L S+        IK  A+ V+H +R
Sbjct: 6   NKVYDFIRANNMIDPGSTVLAGFSGGADSTALMLTLCSLSK---VLNIKLVAVHVNHGIR 62

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
           E A ++  +V + C    I   V        + K +     A R ARY   +E AK    
Sbjct: 63  EEAIEDETFVKNFCEEHDIECVVYKKDIPKLSKKWKMTEEEAGRRARYEAFTETAKKHGT 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           ++I  AH  +D  ET+ M   R     G G        +  +   I RPFL   R +I  
Sbjct: 123 SIIAVAHHQNDVAETLLMNLIRGSGLHGAG-------AIRPVRGNIIRPFLCVDRAEIEK 175

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAMLI 238
           +L  +   +C D +N ++   R  +R  +       +  K         ++   A   + 
Sbjct: 176 YLKGKRQLFCHDKTNDENIHTRNIIRNILIPKMEKEVNKKAVAHLCRAAIEFAKADGYIQ 235

Query: 239 PKYLTVHMR 247
            +   V+ R
Sbjct: 236 DEAEKVYHR 244


>gi|313894633|ref|ZP_07828196.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440823|gb|EFR59252.1| tRNA(Ile)-lysidine synthetase [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 332

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 136/318 (42%), Gaps = 24/318 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +     + IL+A SGG DSM LL  L  + + R   K K     VDH +R  +KDEV ++
Sbjct: 18  KLFPEHSRILIACSGGPDSMALLHLLQDIAAHR-HTKYKLGIAIVDHSIRPESKDEVLWL 76

Query: 74  SDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +    L ++    ++         +       R  RY  ++E A++     I  AH  D
Sbjct: 77  RNQVDALGLSFYTTTFDVPTLSKDLKLSEETVGRRVRYQWLNEIAQSEGYDYIAVAHHKD 136

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ E++     R     G  L+GM   +  D ++ + RP L   + ++ ++L  R +++C
Sbjct: 137 DQAESILAHLIRGTGLNG--LTGMA-VVSNDYDIPVIRPLLDVTKAELLAYLADRKLTYC 193

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---------- 239
            D +N D R++R R+R  +    +  L        D   ++ ++V+  +           
Sbjct: 194 IDSTNDDIRYQRNRIRHRI----IPELESINPNVVDAIARLGSSVSEDLAVISNLTVQAF 249

Query: 240 KYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
           + L    ++ + +S+  L  +   +   L +   +     I+L      E+++  + +G+
Sbjct: 250 ERLVTIDKNEMRLSRKALRKEPVAIQRRLWQRLVSSIDSDITL-TTAHQEQLLDIVNTGE 308

Query: 299 RGCVSIGRVVIDRRANFL 316
               +I  + +  + + +
Sbjct: 309 GKTFTIKSIKVTAQCDTI 326


>gi|301309867|ref|ZP_07215806.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3]
 gi|300831441|gb|EFK62072.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 20_3]
          Length = 438

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 138/343 (40%), Gaps = 32/343 (9%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I ++R ++   R L     +LV +SGG+DS+ LL  L  +            A+  +  L
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E +  +  +  +    L +    + +       +    +  AARE RYA   E  + +
Sbjct: 55  RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGEKHLSIEMAARELRYAWFEEMRERL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I  AH  DD +ETV M   R    +GM       + +   N +I RP L   REDI
Sbjct: 115 GGQAIAVAHHRDDNVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++L  +  ++  D +N  D + R  +R  V  + L  +    +     R   + + A  
Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294
           I  Y+    R  + +S D L+I + + F     +        G   L        +    
Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336
           + GK    S  R++ DR  ++LWIT    +   T +L PE+  
Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITSLEKKEERTFVLDPEKGI 324


>gi|163789070|ref|ZP_02183514.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1]
 gi|159875734|gb|EDP69794.1| tRNA(Ile)-lysidine synthetase [Flavobacteriales bacterium ALC-1]
          Length = 439

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 23/258 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F + I+    F+      + +L+A+SGG DS+ L    H          + F+    +  
Sbjct: 5   FRNHIDKDLLFL----NESKLLIAISGGIDSVVLAHLCHQFQ-------LNFTLAHCNFN 53

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR E +  +  +V ++  +L +   + ++       + +  +  AARE RY   +E A+ 
Sbjct: 54  LRGEESNADEDFVLELADQLNVEVFIQNFDTQTYADENKRSIQMAARELRYDWFTELAEQ 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    I+TAH  DD LET  +   R     G+       T + ++N  I RP L+  RE 
Sbjct: 114 LKFDYILTAHHADDNLETFLINFTRGTGLNGL-------TGIPEINDNIVRPLLQFSREQ 166

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I S+  +  I W ED SN+  ++ R ++R  V  I        +  F +    +N+ V +
Sbjct: 167 IESYANENAIKWREDSSNSSRKYLRNKLRHEVVPILKEINPQLLDSFMNTLDNLNDTVNI 226

Query: 237 LIPKYLTVHMRSIIAISQ 254
           +      V  R+I  I  
Sbjct: 227 VEESLNAVTKRTITKIDD 244


>gi|304383098|ref|ZP_07365573.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella marshii DSM 16973]
 gi|304335784|gb|EFM02039.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella marshii DSM 16973]
          Length = 444

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 87/422 (20%), Positives = 146/422 (34%), Gaps = 44/422 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF   + +     R L      LVA+SGG+DS+ LL  L+ +            A+  + 
Sbjct: 1   MFSKTVSNYIAIHRLLQKEGKYLVALSGGADSVALLFLLNRL-------HYHLEAVHCNF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
            LR E A  +  +   +C  L I    V +  S         +  AARE RY       K
Sbjct: 54  KLRGEEADRDEAFCQKLCRSLNIPFHTVHFDTSSYARLHGISIEMAARELRYNYFESLRK 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            ++   I  AH  DD +ET+ +   R     G GL G+    +   N +I RP L   R 
Sbjct: 114 DLSCDGICIAHHRDDIVETMLINLVR-----GTGLHGLQG--ILPRNGFILRPLLCVGRM 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +L     ++  D +N      R ++R  +  +         +        V+ A+ 
Sbjct: 167 EIEQYLRDIGQTYITDSTNLVADVVRNKIRLNIIPLLKDINPAACESMAKTAFYVSEAIK 226

Query: 236 MLIPKYLTVHMRSIIAIS----QDILNIDST--LLFYLLRVSAAICGGQISLPGYRSMER 289
           +          R            +L   S   LLF++L         Q        +E 
Sbjct: 227 VTEAALQKATQRVCTMPHTLSIPRLLEEPSPEYLLFFIL---------QQYGFRSAQIED 277

Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW---DGRYQFQN 346
           +   L +            +    + L +    + +   +  PEE T     + R+ FQ 
Sbjct: 278 IYTHLHASPGKEWLSATHRLLIDRDRLLLQETEKEVSKPLKIPEEGTYVYRKNVRFSFQT 337

Query: 347 LSDSLIQ--IGPQSYRKADVPSGIPPIIAQ---RALSSMPSKEGGKPLLAPF--SRFMTK 399
           +  +     I    +   D      P+  +        +P    G  L++ F   R MT+
Sbjct: 338 IQTNPGTPVIRDPLWACLDADEVQFPLFIRCTAEGDRFVPFGMKGSKLVSDFMTDRKMTR 397

Query: 400 FD 401
           F+
Sbjct: 398 FE 399


>gi|329113827|ref|ZP_08242598.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001]
 gi|326696837|gb|EGE48507.1| tRNA(Ile)-lysidine synthase [Acetobacter pomorum DM001]
          Length = 435

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 149/385 (38%), Gaps = 30/385 (7%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           FF      P  + +AVSGG DS+ L           SF +    A+ VDH LR  +  E 
Sbjct: 37  FFPDQSDCP-PVAMAVSGGGDSLCLAWLA-------SFWRKNLLALVVDHGLRPESGLEA 88

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                    + I   ++   + K  + +   AREARYA +    +    T ++  H  DD
Sbjct: 89  HQTLARLQAMNIPAQLLVLTDLKKGSAMAHRAREARYARLIAACQEHGCTDLLLGHQADD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV+MR       +G+   G         ++ + RP L   R+ +R+ L Q ++ W +
Sbjct: 149 LAETVWMRQNSSSGPEGLAGMGWITVRP---DIRLIRPMLGFSRQALRNTLRQAHVEWVD 205

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           DPSN D R ERVR+R  ++  D  A + ++  +    R+      A  + +++ +     
Sbjct: 206 DPSNQDQRAERVRLRYLLQKNDQRAHFWQLGMQSGQFRMCRERERAAQLAQHIVMRPEGW 265

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
             +  ++ ++D      +L       GG    P   ++ R+            ++    +
Sbjct: 266 AILGSELPDVD------VLAALIRSIGGAEYPPSQSAVARLKDMAAEA-----TLAGTRL 314

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD---SLIQIGPQSYRKADVPS 366
            R      + R    + + +   E  TVWD R+  +  +      + +    Y    +  
Sbjct: 315 FRHEQQWALMREEAAMASAM-QAENGTVWDNRFVLRLPTSVQKEGLMVAAAGYG---LAR 370

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA 391
            +      R  + +P+       +A
Sbjct: 371 KMRNGQQARFCAVLPALWRAGKRVA 395


>gi|289422484|ref|ZP_06424327.1| tRNA(Ile)-lysidine synthase [Peptostreptococcus anaerobius 653-L]
 gi|289157056|gb|EFD05678.1| tRNA(Ile)-lysidine synthase [Peptostreptococcus anaerobius 653-L]
          Length = 462

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 128/319 (40%), Gaps = 24/319 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVC 77
              I+V +SGG DS+ LL  LH +    +   I+  A+ ++H +R   A  +  YVS +C
Sbjct: 19  GDRIIVGLSGGPDSVCLLHVLHRLSLKMN---IRVYAVHLNHQIRGLDAHLDALYVSKLC 75

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +L IA  + S    K       GL   AR  RY +  E    I A  I   H  +DQ E
Sbjct: 76  HKLGIACFIRSIDVPKYCSENGLGLEDGARNLRYMIFKEVKDRIGANKIAVGHNKNDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR  R    KG  LSGM     Y  +  + RP L   R DI S+    +++   D +
Sbjct: 136 TVIMRIMRGTGIKG--LSGMD----YVRSDGVIRPILDLDRSDIESYCKDHSLTPRIDST 189

Query: 194 NTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY----LTVH 245
           N +  + R ++R  +    RD     +   + +        N+ +              +
Sbjct: 190 NLEAIYSRNKIRLNIIPYMRDEFNENIIETLVRMSRGMRMDNDYIDSQAQAAYKMSSKKY 249

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSI 304
              +   +  + +    +   ++ ++       +     +  + V+  L   K    + +
Sbjct: 250 TNGVYLFTDQVRDQHEAIRSRMVILAIQDILSSVKSFDKKHFDDVLGLLDDSKIDKQIDL 309

Query: 305 GR-VVIDRRANFLWITRAV 322
            R +++ R+ ++L  T+  
Sbjct: 310 PRGLIVYRKKDYLLFTKEA 328


>gi|85859371|ref|YP_461573.1| tRNA(Ile)-lysidine synthetase [Syntrophus aciditrophicus SB]
 gi|85722462|gb|ABC77405.1| tRNA(Ile)-lysidine synthetase [Syntrophus aciditrophicus SB]
          Length = 476

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 139/334 (41%), Gaps = 32/334 (9%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ +R  ++    L    H++ AVSGG DS+ LL  L S+  +    ++  S   ++H L
Sbjct: 2   LDKIRRTIQKYHMLNPGEHVIAAVSGGPDSVALLHVLISLACE---YELTLSVAHLNHGL 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAK 115
           R   +  E + V  +     I+ SV         K  + +  L    R+ RY   +  A 
Sbjct: 59  RGSESDAEEQLVRQLSKERGISCSVKRIDLQALRKCDRRKCSLEDIGRQERYEFFTALAA 118

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            I A+ I   H  +DQ ETV M   R    +G+        I    +    RP L   R 
Sbjct: 119 EIGASRIALGHHREDQAETVLMNFIRGSGLEGL------KGIRPVRDGCFIRPLLEVSRR 172

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVN 231
           DI  FL   ++ + ED SN++D F R R+R      ++++    +   + +  ++  + +
Sbjct: 173 DILDFLQAEHLPFLEDSSNSEDHFLRNRIRHHMIPLLQELYNPRIIDTLNRLAEIARRED 232

Query: 232 NAVAMLIPKYL------TVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGY 284
           + +  ++ + L      ++     ++IS   L+ +D  L + L++     C        +
Sbjct: 233 DCLKSIVDRILEDLLITSLSEEGTVSISISRLHELDEALQYRLVKSLLERCVLSPRRVAF 292

Query: 285 RSMERVMLFLKSGKRGCVSI--GRVVIDRRANFL 316
             ++ V    +  K   +    G V++ R  + L
Sbjct: 293 THIQAVANLCREEKSVGLLFLPGNVLVRREYDNL 326


>gi|288554678|ref|YP_003426613.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4]
 gi|288545838|gb|ADC49721.1| tRNA(Ile)-lysidine synthetase [Bacillus pseudofirmus OF4]
          Length = 465

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 20/287 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           + VAVSGG DSM LL  L   +  R    I+  A+ V+H LR   + D+ +YV   C+  
Sbjct: 21  VFVAVSGGPDSMALLHYL---IKRREMYGIEVEAVHVNHQLRGAESVDDEQYVRKFCTEH 77

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I             S+ + G   AA E RY    E  +    + I TAH  DDQ ET+ 
Sbjct: 78  NIPLHTKKMDVQTFASQNKMGTQKAASELRYQWFDEWLENRPHSCIATAHHGDDQTETIL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M   R      +  SG+    +   N ++ RPFL   +E+I  +  +  I+   D SN  
Sbjct: 138 MTMVRGGNL--LVPSGINVKRIL-QNGFVIRPFLGITKEEIEHYCKREGITPRIDSSNHS 194

Query: 197 DRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKY-----LTVHMRS 248
            ++ R R R+ +      +  ++++ M++FQ+ +    + +  L  +      +    +S
Sbjct: 195 MKYTRNRYRQQIMPFIKSENPSVHIHMQRFQEWQRDDQSYLMELAEEAFKSIVVKKSEQS 254

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR-SMERVMLFL 294
           I    +    +   L   ++ +      G+ S       +E+++  L
Sbjct: 255 ITISIEATERLRFPLQRRVIHLILRYLYGKNSPSSTSIHIEQIIRLL 301


>gi|228476217|ref|ZP_04060920.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis SK119]
 gi|228269702|gb|EEK11201.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis SK119]
          Length = 433

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 124/261 (47%), Gaps = 19/261 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            H+ VAVS G DSM LL     +L+D S+     + + V+H LR+ + +E R++   C +
Sbjct: 12  DHLAVAVSTGIDSMCLLY---KLLNDLSYSYQSITCLHVNHGLRDASVEEERFIKQFCKQ 68

Query: 80  LRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +I   V     S+       + + AR+ RY    E    INA +++TAH  +DQLET++
Sbjct: 69  YQIPCYVKQLDLSETVEKGKSIQSEARDLRYQWFDEMMSKINADVLLTAHHLNDQLETIF 128

Query: 137 MRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R     + +  +G+    +      + +I RP +   + DI+ +    ++ + ED SN 
Sbjct: 129 YRVFTGRSTRNSLGMHECTE----RNHYFICRPLIETYKNDIKQYQTIHHVPFYEDESNH 184

Query: 196 DDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM-R 247
            +++ R  +R  +               LK+K + D+++++    ++  I +Y+ +++  
Sbjct: 185 HNKYARNDIRNRLLPAIDENKDFKVEQLLKLKHWHDMQLQLTQQRISCFIEQYVNIYLNE 244

Query: 248 SIIAISQDILNIDSTLLFYLL 268
             I +S+   N    +   +L
Sbjct: 245 ERIQLSRASFNQLDEISKMIL 265


>gi|157690849|ref|YP_001485311.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032]
 gi|157679607|gb|ABV60751.1| tRNA(Ile)-lysidine synthase [Bacillus pumilus SAFR-032]
          Length = 467

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 18/249 (7%)

Query: 6   IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  +  F++     +    ++V VSGG DSM LL  L+     R  G  +  A  VDH  
Sbjct: 1   MNRIESFLKKHDVYLENTTVIVGVSGGPDSMLLLHELNK----RRKGSFQLIAAHVDHMF 56

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E +  ++ +V   C    I       +      +      AAARE RYA   +  +  
Sbjct: 57  RGEESFVDLAFVEAYCKEQGIPFESARIQVTQYAKENHLNKQAAARECRYAFFRQLMERY 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I  AH  DDQ+ET+ MR  R     G+GL+G+     Y  + W+ RP +   ++D+
Sbjct: 117 KAQFIALAHHGDDQVETMMMRLARGT--VGIGLAGIQAKRPY-QDGWLIRPLIGYSKDDV 173

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234
            +   Q +I +  D SN  D + R R+RR +  +   +   ++   +   D+  +    +
Sbjct: 174 LTACEQAHIPYVIDQSNHTDDYLRNRIRRHILPVLKEEAPHVHESFQFVSDMLTEDEQYL 233

Query: 235 AMLIPKYLT 243
             L  + + 
Sbjct: 234 QALTKEQMN 242


>gi|224475652|ref|YP_002633258.1| putative PP-loop family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420259|emb|CAL27073.1| putative PP-loop family protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 426

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 15/257 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           + +      H+ +AVS G DSM LL  L +  +       K + + V+H +RE +K+E +
Sbjct: 4   YTQGWTENDHLAIAVSTGVDSMVLLDVLTTEFA---HTYQKLTVLHVNHGIREASKEEEQ 60

Query: 72  YVSDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           ++ D C + +I  +V     S+       +   ARE RY     H KTI A +++TAH  
Sbjct: 61  FIRDYCEKHQIPLAVHHLDLSELTAQGKSIQHTAREQRYDWFETHMKTIGANVLVTAHHQ 120

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET++ R     + +      + +T        + RP L   +  IR + +   + +
Sbjct: 121 DDQLETIFYRIMTGRSTRSPLGMSVQETRP---GFKLVRPLLNVTKRVIRQYQVTNEVPY 177

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY------LKMKKFQDLRVKVNNAVAMLIPKYL 242
            ED SNTD+ + R  +R  +               LK+K++ D + +     A    +  
Sbjct: 178 YEDASNTDNHYVRNDIRNRILPEIDENPQLDVSQLLKLKQWHDAQFQQLQDTADRFIQEN 237

Query: 243 TVHMRSIIAISQDILNI 259
           T   +  I I ++  N 
Sbjct: 238 TETEQERINIDRNAFNQ 254


>gi|291528701|emb|CBK94287.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Eubacterium rectale
           M104/1]
          Length = 501

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 111/294 (37%), Gaps = 31/294 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLR-ETAKDEVR 71
           + +   + +LVA+SGG+DS+ LL+ L+ +             A+ V+H +R   ++++ R
Sbjct: 13  KMIKNHSTVLVALSGGADSVCLLLVLNEIKRQCTDELDFALEAVHVEHGIRGAESREDAR 72

Query: 72  YVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINAT------- 120
           + SD+C RL I   V S    +       GL  AAR  RY    E A             
Sbjct: 73  FASDLCERLNIPCHVHSVDVPQYAASHGLGLEEAARILRYEAFEEEAGRYPCETAYAADQ 132

Query: 121 --------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                   ++  AH  +D  ETV  +  R    KG+        +     +   RP L  
Sbjct: 133 KQGNSRQAVVAVAHHMEDNAETVLFQMLRGSGAKGLAGMH---PVSVKNGVTYIRPLLSA 189

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-- 230
            R  I  +L +   ++  D +NTD  + R ++R  V  + L      ++   +   ++  
Sbjct: 190 TRAQIEEYLKENGQAFVTDATNTDTAYSRNKLRHDVFPLLLQINDRAIEHINESAGQLAV 249

Query: 231 -----NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
                   +       ++     +I       ++   L   + R    +  G++
Sbjct: 250 MNDFYEQQLKEACDSMVSKKEGRVILEISRFESLHPALKSGVARECIHLASGRL 303


>gi|153808575|ref|ZP_01961243.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185]
 gi|149128897|gb|EDM20114.1| hypothetical protein BACCAC_02871 [Bacteroides caccae ATCC 43185]
          Length = 426

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 75/341 (21%), Positives = 129/341 (37%), Gaps = 38/341 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE    F       + ILVA+SGG+DS+ LL  LH+             A   +  LR E
Sbjct: 10  IEKNHLFS----SDSKILVALSGGADSVALLRILHT-------AGYHCEAAHCNFHLRGE 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C +  I      +      ++    +  AARE RY    E      A 
Sbjct: 59  ESNRDESFVRQLCLKYNIRLHTTDFNTTQYAAEKHISIEMAARELRYNWFEEIKNKYRAD 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET+ +   R     G+         +   N  I RP L   R++I  +
Sbjct: 119 VIAVAHHQDDSIETMLLNLIRGTGITGL-------LGIRPRNGAIVRPLLCVNRKEIIQY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L      +  D +N +D + R ++R  +  +             +    +N+        
Sbjct: 172 LQNIEQDYVTDSTNLEDEYTRNKIRLNLLPLMEEINPSVKNSLVETSNYLNDVA------ 225

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSA--AICGGQISLPGYR--SMERVMLFL-- 294
             T++ + I      I+  +   +  LL+ +    I    +   G+    ++ +   L  
Sbjct: 226 --TIYNKCIAKTKARIVTPEGIRISSLLKEAVPETILFETLHPLGFNSTQIKDIANSLHG 283

Query: 295 KSGKRGCVSIGRVVIDRRANFL-WITRAVRNLPTLILYPEE 334
           +SGK+      RV+ DR    L  I    +++P   L  EE
Sbjct: 284 QSGKQFASKEWRVIKDREFLLLEEIRSEEKDIPPFQLIKEE 324


>gi|326692378|ref|ZP_08229383.1| tRNA(Ile)-lysidine synthase [Leuconostoc argentinum KCTC 3773]
          Length = 435

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 120/300 (40%), Gaps = 20/300 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE ++  +++  +   I+VAVSGG DS+ LL AL   L        +     V++ LR  
Sbjct: 2   IEKIQQQLQAQDWEPTIIVAVSGGVDSVVLLHALRQHLPTA-----QLVVAHVNYHLRAE 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + ++  +V+++  + +    +  W +  P TG+ A AR  RY      A       I  A
Sbjct: 57  SDEDAAFVAELAQQYQAQFELCEWDDI-PTTGVEAQARTLRYRFFEALAAKYQTQTIAVA 115

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +DQ ETV ++  R        L+GM  +        I RPFLR  ++ + S+     
Sbjct: 116 HHANDQAETVLLKLARGGQV--TQLAGMATSRAK-----IRRPFLRITKQTLMSYAQAHG 168

Query: 186 ISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           ++W  D +N D  +  R R+R  V           +     +  ++     ++       
Sbjct: 169 LTWRHDQTNDDPDYTARNRLRHVVVPALQQINPQAVTHINAMAAQIQAQSDLITQTAADY 228

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                  ++ +   I S  L   L V     G  I       + +V+  L + K+   S+
Sbjct: 229 VPL----LTSNWPAIPSRWLLPTLTVFLQQQG--IYRIKQAQLAQVVKLLHNDKKPTGSV 282


>gi|314937284|ref|ZP_07844626.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313654580|gb|EFS18330.1| tRNA(Ile)-lysidine synthase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 431

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 123/261 (47%), Gaps = 19/261 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            H+ VAVS G DSM LL     +L+D S      + + V+H LR+ + +E R++   C +
Sbjct: 10  DHLAVAVSTGIDSMCLLY---KLLNDLSHSYQSITCLHVNHGLRDASVEEERFIKQFCKQ 66

Query: 80  LRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +I   V     S+       + + AR+ RY    E    INA +++TAH  +DQLET++
Sbjct: 67  YQIPCYVKQLDLSETVEKGKSIQSEARDLRYQWFDEMMSKINADVLLTAHHLNDQLETIF 126

Query: 137 MRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R     + +  +G+    +      + +I RP +   + DI+ +    ++ + ED SN 
Sbjct: 127 YRVFTGRSTRNSLGMHECTE----RNHYFICRPLIETYKNDIKQYQTIHHVPFYEDESNH 182

Query: 196 DDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM-R 247
            +++ R  +R  +               LK+K + D+++++    ++  I +++ +H+  
Sbjct: 183 HNKYARNDIRNRLLPAIDENKDFKVEQLLKLKHWHDMQLQLTQRRISCFIEQHVNIHLNE 242

Query: 248 SIIAISQDILNIDSTLLFYLL 268
             I +S+   N    +   +L
Sbjct: 243 ERIQLSRASFNQLDEISKMIL 263


>gi|222099059|ref|YP_002533627.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359]
 gi|221571449|gb|ACM22261.1| tRNA(Ile)-lysidine synthase [Thermotoga neapolitana DSM 4359]
          Length = 419

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 17/272 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DSM LL  L  +       KI+     +DH +RE+++ + ++V D+C +  
Sbjct: 13  VLVAVSGGIDSMTLLYILKKLSP---LLKIEVLGAHLDHRIRESSERDRKFVEDICRQWN 69

Query: 82  IAHS--VVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +     VV        +G  L   ARE RY+ + + AK + AT I  AH  +D LETV  
Sbjct: 70  VPVETAVVDVPALWKGSGKTLEEVAREVRYSFLEKVAKKLGATKIALAHHKNDLLETVLH 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+    +             RPFL  +R +I  +  ++ I +  D +N D 
Sbjct: 130 RLVRGTGPLGIACIPVKRE-------KYIRPFLVFKRSEIEDYAQKQKIPFVVDETNYDI 182

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           ++ R  +R  V  + L  L   ++      V ++  +   + + +   ++  +   +D  
Sbjct: 183 KYTRNFIRHRVVPL-LKKLNPNVEDAVYRLVSISFMLREFVEETVQNFVKEKVHFYKDFA 241

Query: 258 NIDSTLLFYLLRVSAAICGGQISL--PGYRSM 287
             +     +L           +    P Y  +
Sbjct: 242 VFEEPKNQFLFLEVTRWVLKTLYGRTPDYEKL 273


>gi|15643345|ref|NP_228389.1| hypothetical protein TM0579 [Thermotoga maritima MSB8]
 gi|8928511|sp|Q9WZ48|TILS_THEMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|4981097|gb|AAD35664.1|AE001733_1 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 414

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 67/278 (24%), Positives = 115/278 (41%), Gaps = 17/278 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L    H+LVAVSGG DSM LL  L          KIK +A  +DH +RE+++ +  +V  
Sbjct: 2   LEEGEHVLVAVSGGIDSMTLLYVLRKFSP---LLKIKITAAHLDHRIRESSRRDREFVER 58

Query: 76  VCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +C +  I                   L   ARE RY  +   AK + A+ I  AH  +D 
Sbjct: 59  ICRQWNIPVETSEVDVPSLWKDSGKTLEEIAREVRYDFLKRTAKKVGASKIALAHHKNDL 118

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LETV  R  R     G+         +        RPFL  +R +I  +  + N+ +  D
Sbjct: 119 LETVVHRLIRGTGPLGLA-------CISPKREEFIRPFLVFKRSEIEEYARKNNVPYVVD 171

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            +N + ++ R  +R  +  + +  L   ++      V V + +   + + +   +   + 
Sbjct: 172 ETNYNVKYTRNFIRHRIVPL-MKELNPTVEDAVYRLVSVTHLLRNFVERTVQDFVERNVY 230

Query: 252 ISQD-ILNIDSTLLFYLLRVSAAICGGQI-SLPGYRSM 287
             +D  + ++   LF  L V+  +       +P Y  +
Sbjct: 231 FYKDYAVFVEPEDLFLFLEVTRWVLKEMYGRVPEYEKL 268


>gi|251779290|ref|ZP_04822210.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083605|gb|EES49495.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 468

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 21/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
               ILVA+SGG DS+ LL  L  +   R    I+  A  ++H LR E A  +  +V   
Sbjct: 17  SGDKILVALSGGPDSLCLLNILKEL---REELDIEIGAAHLNHLLRGEDAFKDEEFVIST 73

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  + I + V     +K     +     A R  RY    E  K      I TAH  +DQ 
Sbjct: 74  CKEMNIPYYVKRVDINKYSKEHKLSSELAGRNVRYGFFDEILKKDGFNKIATAHNANDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+  R  R    +G+G   +C          I RP L   R+++  ++ ++N++   D 
Sbjct: 134 ETIIFRLMRGTGLEGLGGIKVCRE------DKIIRPILCLTRKEVEKYIKEKNLNPRIDK 187

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +N +  + R ++R       L  +      F +  VK  N +++LI K      R  I  
Sbjct: 188 TNFEKIYNRNKIR-------LDIIPYIQNNFNEDIVKTLNRMSLLIQKDNAFIERLCIKA 240

Query: 253 SQDILNIDSTLLFYLLRV 270
             +    ++   FY+L+ 
Sbjct: 241 YNEYCKKNTDSKFYILKK 258


>gi|188588191|ref|YP_001919610.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498472|gb|ACD51608.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 468

 Score =  213 bits (542), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 21/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
               ILVA+SGG DS+ LL  L  +   R    I+  A  ++H LR E A  +  +V   
Sbjct: 17  SGDKILVALSGGPDSLCLLNILKEL---REELDIEIGAAHLNHLLRGEDAFKDEEFVIST 73

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  + I + V     +K     +     A R  RY    E  K      I TAH  +DQ 
Sbjct: 74  CKEMNIPYYVKRVDINKYSKEHKLSSELAGRNVRYGFFDEILKKDGFNKIATAHNANDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+  R  R    +G+G   +C          I RP L   R+++  ++ ++N++   D 
Sbjct: 134 ETIIFRLMRGTGLEGLGGIKVCRE------DKIIRPILCLTRKEVEKYIKEKNLNPRIDK 187

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +N +  + R ++R       L  +      F +  VK  N +++LI K      R  I  
Sbjct: 188 TNFEKIYNRNKIR-------LDIIPYIQNNFNEDIVKTLNRMSLLIQKDNAFIERLCIKA 240

Query: 253 SQDILNIDSTLLFYLLRV 270
             +    ++   FY+L+ 
Sbjct: 241 YNEYCKKNTDSKFYILKK 258


>gi|288800193|ref|ZP_06405652.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288333441|gb|EFC71920.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 444

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 35/287 (12%)

Query: 1   MFLSPIESVRFFV--RSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           MFL  IE    F+  + L+    + LVA+SGG+DS+ LL+ L  +            A  
Sbjct: 1   MFLRKIEQ---FIEQKELMSKNQLYLVALSGGADSVALLLVLKRL-------GYNVEAAH 50

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISE 112
            +  LR E +  +  +  D+C  L I   +  +      S     +  AAR  RY     
Sbjct: 51  CNFHLRGEESDRDEDFCKDLCRELDIKLHLAHFDTQTNASLHGISIEMAARNLRYNYFEA 110

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K INA+ +  AH  DD  ET+ +   R    +G+       T +   N  I RPFL  
Sbjct: 111 LLKDINASAVCVAHHKDDSAETLLLNLVRGTGIEGL-------TGIKSKNNRIVRPFLCV 163

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQD 225
           RR +I ++L Q+N S+  D SN  +  +R ++R       + +    +  L    +  +D
Sbjct: 164 RRNEIINYLEQQNQSFVTDSSNLVNDVQRNKIRLDVMPLLQTINPSVVEHLNQTGEYVED 223

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID---STLLFYLLR 269
               +N  +  +  + + +     + +  + L  +   S LL+Y+L+
Sbjct: 224 ATAILNATLEQMYDRVVLLKTEEQMIVDIERLEKEQSSSYLLWYILK 270


>gi|325288401|ref|YP_004264582.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963802|gb|ADY54581.1| tRNA(Ile)-lysidine synthase [Syntrophobotulus glycolicus DSM 8271]
          Length = 475

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 119/323 (36%), Gaps = 20/323 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + ILVAVSGG DS+ L   L     +     I      + H +R  +  E   V  +
Sbjct: 15  PSGSRILVAVSGGPDSIALWHILDRYARE-EKSDISLVISHIHHGVRRESDQEEEMVRKL 73

Query: 77  CSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +     SV  +K      K +     AARE RYA   E        LI TAH   DQ 
Sbjct: 74  AGKFETELSVHRFKAKDYADKSKKSFQEAAREWRYARFQEDKDKYQCHLIATAHHLGDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+  R  R     G+G        +Y     I RP L   +++I ++     +S+  D 
Sbjct: 134 ETLLYRLLRGSGTSGLG-------GIYPSAGEIIRPLLTVSKQEILAYCEAEGLSFALDQ 186

Query: 193 SNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           SN +  + R ++R  +  I           AL    +  +     +   V  L  +Y   
Sbjct: 187 SNFEPVYVRNKIRLELLPILKKNYNSRIEEALGRTAELLRWDEEYIQTQVVALWSRYCLE 246

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                I  S++     + +L  LLR++A    G      ++ ++ +M             
Sbjct: 247 EDGRRIVFSREAWQEPNAVLSRLLRLAAEKINGDPRGLEFKLIKTLMEEGWQQDWQQDLP 306

Query: 305 GRVVIDRRANFLWITRAVRNLPT 327
           G  V   +   +++ R +++   
Sbjct: 307 GIKVCGMKEGLVFLRREIKSEEK 329


>gi|225573962|ref|ZP_03782607.1| hypothetical protein RUMHYD_02056 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038779|gb|EEG49025.1| hypothetical protein RUMHYD_02056 [Blautia hydrogenotrophica DSM
           10507]
          Length = 468

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 123/335 (36%), Gaps = 28/335 (8%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  F++    L     I+  +SGG DSM LL  L      R     +  A+ V+H +R
Sbjct: 10  EKVWQFIQKHHMLEAGDRIVAGISGGGDSMALLFLLLKF---RERCGYEVCAVHVNHGIR 66

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            + A  +   V+  C+   +   V    V     K       A R  R     +  +   
Sbjct: 67  GDEAFRDETLVTKYCADRNVDCEVFHCSVPEAVKKYGWSEEEAGRILRRQAYEQVLRQWK 126

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +  AH  +DQ ET+     R     G GL G+   +     +   RPFL   R +I 
Sbjct: 127 GNKVALAHHQNDQAETMLHNLSR-----GCGLRGIRGMLPVQNGM--IRPFLCIERREID 179

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFV-----RDID---LHALYLKMKKFQDLRVKV 230
            +L ++ I +  D +N  D++ R R+R+ V     R+++   +  +             +
Sbjct: 180 HYLKEKKIPYRTDSTNFSDQYIRNRIRKHVVEYLERNVNSKTVSHMAWTAGIAAQAEEYL 239

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                 ++ +Y  + +   I IS D L   S L  Y    +     G         +E++
Sbjct: 240 CGQGERILAQYGEL-LPGEIRISDDCLGEPSILRMYGFLQALEKVSGYRKDLSGEHLEQI 298

Query: 291 MLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRN 324
               +      VS+ G     R    + I + V+ 
Sbjct: 299 SRLFQKETGKQVSLPGGTTAVRVYGGIIIRKTVKE 333


>gi|332520627|ref|ZP_08397089.1| tRNA(Ile)-lysidine synthetase [Lacinutrix algicola 5H-3-7-4]
 gi|332043980|gb|EGI80175.1| tRNA(Ile)-lysidine synthetase [Lacinutrix algicola 5H-3-7-4]
          Length = 438

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 129/311 (41%), Gaps = 38/311 (12%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSD 75
           +  A IL+AVSGG DS+ L      +        +  +    +  LRE  +  +  +V +
Sbjct: 16  LKKAKILIAVSGGLDSVVLTHLCSKL-------NLNIALAHCNFNLRENESDTDEAFVLE 68

Query: 76  VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +   L I   V  +         ++ +  AAR  RY    + A+ +    I+TAH  DD 
Sbjct: 69  LAKTLDIEAFVQHFNTEAYAKAEKSSIQMAARTLRYNWFFDLARQLQFDYILTAHHADDN 128

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LETV +   R    +G+       T + + N  I RP L+  RE +  +   +NI+W ED
Sbjct: 129 LETVLINLTRGTGIEGL-------TGIPERNENIVRPLLKFSRESLEYYAKSKNIAWRED 181

Query: 192 PSNTDDRFERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            SN   ++ R ++R         +    L  +   +   +D +  V  +V+ ++ + +  
Sbjct: 182 SSNASTKYLRNKLRHDVIPILKEINPTLLKNVETTLDNLKDTKAIVQESVSAVLKRAIIQ 241

Query: 245 HM-RSIIAISQDILNI--DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           H   ++I   Q+  N+      LF + ++                +E ++   +SGK+  
Sbjct: 242 HDSEAVIYKIQEFKNLKQPKAYLFEVFKIYGFTDWNV--------LENLL-HAQSGKQIM 292

Query: 302 VSIGRVVIDRR 312
            +   ++ +R 
Sbjct: 293 SNTHTLLKNRE 303


>gi|163791058|ref|ZP_02185479.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7]
 gi|159873703|gb|EDP67786.1| hypothetical protein CAT7_12110 [Carnobacterium sp. AT7]
          Length = 471

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 66/339 (19%), Positives = 137/339 (40%), Gaps = 19/339 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M+   +E+ +  +        +L+AVSGG DSM LL  +  +          F  + V+H
Sbjct: 3   MYSEFLENCQENL-YWKPTDRLLLAVSGGVDSMVLLDLIQRLPKVVRPW---FGMVHVNH 58

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119
            LRE + +E +++ D C    I+     W   + P  G+ AAARE RYA      +   A
Sbjct: 59  QLREASIEEEKFLVDYCKSANISFFFKRWPVKEQPTDGVEAAAREFRYAFFRNVLRDQQA 118

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T ++T H  DDQ+ET+ MR  R    +   ++G+ +   +     ++RP L   ++ +  
Sbjct: 119 THLLTGHHGDDQIETILMRLVRGGQLE--SIAGIKEQRSF-YGSQLTRPLLPYSKKMLYH 175

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAM 236
           +  +R++ + ED +N    + R R R  +  +        +  F +    + +       
Sbjct: 176 YSQERSLVFFEDETNKSLDYTRNRYRHQIVPLLKKENTQVLTHFSEFSSDLQDVITVAKK 235

Query: 237 LIPKYLTVHMRSIIAISQDI-----LNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERV 290
            I K   +          ++     L  +  +   +++     +   + S  G +   ++
Sbjct: 236 EIEKNTAILCTEKNPFCWELDIHLFLTFEPAMKRQVMQALFNKLFKNEASEFGRKHQRQI 295

Query: 291 MLFLKSGK-RGCVSIGRVVIDRR-ANFLWITRAVRNLPT 327
           +  +++ K    + +    I ++     +  +    L  
Sbjct: 296 IQLIENDKPNSQLDLPGNWIGKKVYQTFYFLKEQEQLAE 334


>gi|291530325|emb|CBK95910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Eubacterium
           siraeum 70/3]
          Length = 306

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 129/314 (41%), Gaps = 26/314 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
               ++ AVSGG+DS+ LL  L+S+  +  F     +A  V+H LR E +  + R+V  +
Sbjct: 4   KGDTVIAAVSGGADSVALLYVLYSLKDELGF---SLAACHVNHNLRGEESDSDERFVRRM 60

Query: 77  CSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           C  L I     S K +   +    L   AR  RY      +K     LI TAHT  D  E
Sbjct: 61  CRFLDIPLYTASIKVNDLRQKHDSLEECARRLRYEFFESISKD---RLIATAHTASDNCE 117

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G  LSG+C       N  I RP L   REDI  +  +  + +  D +
Sbjct: 118 TILINMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDST 170

Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N  D + R ++R  V  +      +L+  + +        +  +  +  + +     + +
Sbjct: 171 NLSDDYTRNKIRHKVVPLLKEINPSLFGAISRLSQSVSDDDRYLDKIASELMEKARTADV 230

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR---V 307
                IL      +    R+   I       P  +++E  +  +++G +G ++  +   V
Sbjct: 231 KYDVGILRTADDCILR--RIVTMIFKDNDIPPNMKAVESCVGIIRAG-QGKINPCQFRFV 287

Query: 308 VIDRRANFLWITRA 321
            I ++  F+   R 
Sbjct: 288 QIRKKKLFVVTDRE 301


>gi|323340112|ref|ZP_08080377.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus ruminis ATCC 25644]
 gi|323092489|gb|EFZ35096.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus ruminis ATCC 25644]
          Length = 450

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 123/299 (41%), Gaps = 18/299 (6%)

Query: 14  RSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           + +  PA+  +LVAVS G DSM LL  L  +               VDH LRE +K E  
Sbjct: 16  KKMGVPANETVLVAVSTGCDSMTLLSLLQRLPEKMR---PTVQVAYVDHQLREQSKKETD 72

Query: 72  YVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +++  C +  +      W+    P+ G+  +ARE RY    +  +      ++TAH  +D
Sbjct: 73  FITKYCQKNGLVLFKNVWEKEFHPKKGIEESAREFRYRFFEKIMEETGIEYLLTAHHSND 132

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET+ M++ R    +   L G+     +     + RP L   +E ++ +  +  I + E
Sbjct: 133 QAETILMKAVRGGDLE--QLVGIKSARTFGTG-KLLRPLLHFSKETLKEYAERNQIKYFE 189

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV----AMLIPKYLTVHM 246
           D +N  D   R R+R  V           +   ++L +++ + +      ++   L + +
Sbjct: 190 DETNALDDVLRNRLRHHVVPFLEKENRHFLTHVEELSLQLKDLLDYSDKKIVDDCLLLKV 249

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
               ++ +  L  D +     L+      G        +  E+ +  L++  +   S+ 
Sbjct: 250 EGGYSL-EKWLKQDESQKRLTLKHILKQAGNF----SLKKQEQCVKMLENDAKPQGSLA 303


>gi|298386289|ref|ZP_06995845.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14]
 gi|298260666|gb|EFI03534.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_14]
          Length = 426

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 134/355 (37%), Gaps = 45/355 (12%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  IE    F         +L+A+SGG+DS+ LL  LH+          +  A   +  L
Sbjct: 7   IRYIEKEHLFS----PNDKLLIALSGGADSVALLRVLHT-------AGYQCEAAHCNFHL 55

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E +  + ++V  +C +  I    + +      ++ +  +  AARE RY    +  +  
Sbjct: 56  RGEESNRDEQFVRQLCQKYGIRLHTIDFNTTQYATEKRISIEMAARELRYNWFEKIKEEC 115

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A +I  AH  DD +ET+ +   R     G+         +   N  I RP L   RE+I
Sbjct: 116 GAHVIAVAHHQDDSVETMLLNLIRGTGITGL-------LGIRPRNGAIVRPLLCINREEI 168

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
             +L Q   ++  D +N +D + R ++R       + +     ++L        D+ V  
Sbjct: 169 IRYLQQIGQNFVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNSLIETSNHLNDVAVIY 228

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           N  +     + +T     I A+ ++        LF  L                  ++ +
Sbjct: 229 NKVITEAKTRIITPEGIRINALLEEP--APEAFLFETL---------HPLGFNSAQIKDI 277

Query: 291 MLFL--KSGKRGCVSIGRVVIDRRANFLWITRA--VRNLPTLILYPEETTVWDGR 341
              L  +SGK+      RV+ DR    L   R      LP  ++  E     D R
Sbjct: 278 ANSLHGQSGKQFVSKEWRVIKDRNLLLLETIRPEDESTLPYQLIKEEREFTPDFR 332


>gi|255546471|ref|XP_002514295.1| raspberry3, putative [Ricinus communis]
 gi|223546751|gb|EEF48249.1| raspberry3, putative [Ricinus communis]
          Length = 679

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 125/307 (40%), Gaps = 24/307 (7%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIK-FSAISVDHCLRET 65
           R  +  L     I + VSGG DS+ L +   +  S    +S G +    AI VDH LR  
Sbjct: 51  RMAMAGLKPQHRIAIGVSGGPDSVALCVLTAAWKSAGVAKSEGFVDGLLAIVVDHGLRPE 110

Query: 66  AKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYALISEHAKTINATLI 122
           +K+E + VS   S + +   +   SW   +P+ G L   AR+ RY  +          ++
Sbjct: 111 SKEEAQVVSRRVSDMGVRCEIACCSWYRGRPKQGHLQEEARDMRYQKLHSICLQHQIGVL 170

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-----------DLNLWISRPFLR 171
           + AH  DDQ E   +R  R+    G+        I +           + ++ ++RP L 
Sbjct: 171 LIAHHADDQAELFILRLSRNSGVLGLAGMAFTSQIFFSNAQPNDEGLKNESILLARPLLH 230

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLR 227
             +ED+          W EDP+N    + R R+R  + ++        L   +   +  R
Sbjct: 231 FSKEDMYKICQVAGQDWVEDPTNQSPLYARNRIRMSLGNLSSLTFKSELQAVISACRKTR 290

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYR 285
             V+     LI + +T+  +    I  +ILN    +   L++  A +     Q   P   
Sbjct: 291 AFVDQTCRNLINQAVTLIHQGYAIIDLEILNPSKVMDICLVKFLALVLQFISQRYKPVRG 350

Query: 286 SMERVML 292
           S  R++L
Sbjct: 351 SALRLLL 357


>gi|46201289|ref|ZP_00055345.2| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Magnetospirillum magnetotacticum
           MS-1]
          Length = 429

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 158/385 (41%), Gaps = 20/385 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VAVSGG+DS+ L +        R     +  A++VDH LR  +  E   V +     
Sbjct: 12  RLAVAVSGGADSLALALLAAQWARARGG---EVLALTVDHRLRPDSTAEAERVGEWLGGE 68

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            IAH +++W+  KP   L AAAR ARY L+ E         ++ AH  DDQ ET+ +R  
Sbjct: 69  GIAHRILAWEGDKPAADLQAAARAARYRLLGEACAAEGILHLLVAHHQDDQAETLLLRLG 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+          +     + RP L   R  + +FL  R   W +DPSN ++ F 
Sbjct: 129 RGSGLDGLSAMAPERPTAWGR---LLRPLLVVPRARLEAFLRHRGQDWVQDPSNRNEAFA 185

Query: 201 RVRVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           RVR+RR   D+         L     +    +  V+  VA    +++T+       +   
Sbjct: 186 RVRLRRLAGDLAAEGMTAQRLGQTAGRLARAQTAVDAMVAEAAARHVTLDPAGYARLQPK 245

Query: 256 IL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
           +L  +   +   LL       GG+   P    +ER+   L +G     ++    I     
Sbjct: 246 VLARLPEEVGLRLLARLLLCVGGEDVTPRLERLERLYTALTAGLETARTLAGCRIVPVGE 305

Query: 315 FLWITRA-VRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADVPSGI 368
            + I R   R  P + L P     WDGR++     D+     L  +GPQ   K     G 
Sbjct: 306 TVIICREPARMSPPVDLAPGTRIRWDGRFEAMVARDASPGLRLGGLGPQGRSKVQELMGG 365

Query: 369 PPIIAQRA--LSSMPSKEGGKPLLA 391
            P+    A  + ++P     + +LA
Sbjct: 366 KPLEPVPACVIPTLPGLYDERGILA 390


>gi|163750367|ref|ZP_02157607.1| cell cycle protein MesJ [Shewanella benthica KT99]
 gi|161329857|gb|EDQ00843.1| cell cycle protein MesJ [Shewanella benthica KT99]
          Length = 467

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 122/311 (39%), Gaps = 17/311 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A +++A SGG DS  L + L      R   + ++  + V H L + A   V +     
Sbjct: 27  PGAKLVLAYSGGVDSELLALGLSEFA--REHHEYRYLLVHVHHGLSDHADAWVAHCESRA 84

Query: 78  SRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               +A S+        P+  + A AR ARY  +    +      ++TAH  DDQLETV 
Sbjct: 85  EAYGLAISIKRVVVDTGPRKSVEAEARNARYDAMRSQMEP--GDALLTAHHLDDQLETVL 142

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R    KG+   G     ++  +  + RP L   RE I +      +    D SN+D
Sbjct: 143 LALTRGLGPKGLAAMG--SMQVFGKDKQLIRPLLSISRELIEAKAKAVGLVHITDESNSD 200

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           D+++R  +R  +    L A +  +         +      +I   ++  +   I+  Q  
Sbjct: 201 DKYDRNFLRLEIIPR-LKARWGAIATTASRSAFLCAQQQAVIDAEVSERLPIFISSRQGG 259

Query: 257 LNIDSTLL------FYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307
            ++D  LL      +  L     I     + P    + +V   +L  +   +  + +G +
Sbjct: 260 DSLDLGLLGAQSSNWQSLLFRGFIEQLGFAPPSQSQLAQVLSQLLTARRDAKVELKLGDL 319

Query: 308 VIDRRANFLWI 318
           +I R     ++
Sbjct: 320 LIRRYQGHAFL 330


>gi|328956577|ref|YP_004373963.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4]
 gi|328672901|gb|AEB28947.1| tRNA(Ile)-lysidine synthase [Carnobacterium sp. 17-4]
          Length = 467

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 124/290 (42%), Gaps = 16/290 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+AVSGG DSM L+  +  + +        F  + V+H LR+ + +E +++S  C+ 
Sbjct: 21  DRLLLAVSGGVDSMVLVDLIQRLPNAIRPW---FGVVHVNHQLRQASMEEEKFLSQYCAS 77

Query: 80  LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            RI      W   + Q  G+ AAARE RYA   E  K   AT ++T H  DDQ+ET+ MR
Sbjct: 78  NRIPFFFKRWPVEEHQVEGVEAAAREFRYAFFHEVLKEQQATHLLTGHHGDDQMETILMR 137

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   ++G+     +     ++RP L   +E +  +  +R++S+ ED SN    
Sbjct: 138 LVRGGQLE--SIAGIKKHRTF-YGKQLTRPLLDYSKETLYQYSQERSLSFYEDESNNSLE 194

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS----- 253
           + R R R  +  +        +  F D    + + + +   +                  
Sbjct: 195 YTRNRYRHQIIPLLKKENTQVLTHFADFSSDLQDVITVAKQEIEKQAANVCFQKGPFCWE 254

Query: 254 ---QDILNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSGKR 299
                 L  +  +   ++++    I   ++S  G +   +++  ++  K 
Sbjct: 255 LDVPLFLTFEPAMKRQVMQILFNKIFHKEVSKVGRKHQVQIIDLIEKDKP 304


>gi|260654697|ref|ZP_05860187.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1]
 gi|260630713|gb|EEX48907.1| tRNA(Ile)-lysidine synthase [Jonquetella anthropi E3_33 E1]
          Length = 419

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 101/381 (26%), Positives = 145/381 (38%), Gaps = 35/381 (9%)

Query: 1   MFLSPIESVRFFVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M LS +E  R   R   +    + VAVSGG DSMGLL    +       G    +AI +D
Sbjct: 1   MTLSAVEKFRAAARRDGWLGQPLAVAVSGGGDSMGLLWLCLA------SGLRPCAAIHLD 54

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKT 116
           H LR ++ DE R+V + C RL +         +        +  A R  RYA + E A++
Sbjct: 55  HGLRPSSADERRFVEETCGRLGLPFFWKRIDAASRRLQGESVEVACRRERYAFLREAAQS 114

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A+++  AHT DDQ ETV M   R     G+        I     +W  RP L  RR++
Sbjct: 115 AGASVVALAHTADDQAETVLMNICRGCGLWGLA------GIPRRRGMW-VRPVLDFRRDE 167

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRV 228
           +R  L     +W ED SN+D R+ R RVR        R V       L    ++  + R 
Sbjct: 168 LRDLLKDAGWTWVEDESNSDRRYTRNRVRADLLPELERQVGAGAAVHLAALAQEAWEARS 227

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             N  +  L+     +       +S   L  +   L+  LLR  +A  GG    P  R M
Sbjct: 228 DENVLMTSLLAGASRLAPEPFQKVSLKRLRLLSDGLIARLLRHLSAQNGGAA--PSRRRM 285

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
           + +   ++   R      R       +               +   E   W G       
Sbjct: 286 DDLTGLVRRSGRWTFQWDRHHDLTARDGHLFWGPSSERVIQTVEVSERADWGGW------ 339

Query: 348 SDSLIQIGPQSYRKADVPSGI 368
            D     GP      +VP G 
Sbjct: 340 -DVSFVSGPMGPWDLNVPVGR 359


>gi|94676863|ref|YP_588575.1| tRNA(Ile)-lysidine synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94220013|gb|ABF14172.1| tRNA(Ile)-lysidine synthetase [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 486

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 129/328 (39%), Gaps = 19/328 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + +++A SGG DS  LL  L S+    +          A+ ++H     + D   +    
Sbjct: 23  SKLVLAFSGGLDSTVLLDILTSLRDTNNSKITALFSLRAVHINHGFNSNSDDWQIHCEQQ 82

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C +  + +  +  +      G+ AAAR ARY  + +  K     +++TA   DDQ+ET+ 
Sbjct: 83  CRQRAVPYHFIKVRLKTKNNGVEAAARYARYQALYDVLKP--GEILLTAQHQDDQVETLL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R       GLSGM     +  +  + RP L C R  +  +    N++W ED SN +
Sbjct: 141 LAIKRGSGP--TGLSGMATNANWG-DYRLIRPLLTCSRMQLNRYASYFNLNWIEDDSNKN 197

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD- 255
           DRF+R  +R  +  I L   + +  K      ++      L+ + L   +  +I      
Sbjct: 198 DRFDRNFLRLHII-IQLQKRWPQFSKSAIRSAQLCAEQENLLDELLKDTLDMLIMPDGSL 256

Query: 256 ----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV 308
               +L +       LLR   A  G    +P  + +  +   +            +G  +
Sbjct: 257 QFTPLLTMSDIKRNALLRRWLASQGAW--MPSRQQLTHIWKNVVLSSRAAMPQFILGDKL 314

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETT 336
           + R  N L++     ++   +       
Sbjct: 315 LRRFRNKLYLLSKKISVEPTVKILLWQI 342


>gi|70727501|ref|YP_254417.1| hypothetical protein SH2502 [Staphylococcus haemolyticus JCSC1435]
 gi|68448227|dbj|BAE05811.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 431

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 19/264 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI++AVS G DSM L    H++LS  S    + + + V+H LRE +  E  ++   C + 
Sbjct: 14  HIVIAVSTGVDSMSLF---HNLLSQSSRTYKQLTCLHVNHGLREASHKEEAFIEAFCKQY 70

Query: 81  RIAHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            I   V              + A AR+ RY    E  K ++A +++TAH  DDQLET++ 
Sbjct: 71  EITCYVKHLNLTDVVAQGKSIQADARQLRYEWFDEMMKRLDADVLLTAHHLDDQLETIFY 130

Query: 138 RSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           R     + +  +G+    D      +  I RP L   +EDIR +  +  + + ED SN+D
Sbjct: 131 RLFTGRSTRSTLGI----DVQSIRNHYTICRPLLEVSKEDIRDYQHKYQVPYYEDSSNSD 186

Query: 197 DRFERVRVRRFV-----RDIDLHALY-LKMKKFQDLRVKVNN--AVAMLIPKYLTVHMRS 248
           +++ R  +R  +     ++ DL + + LK+K++ D++++ +   A + +    L     +
Sbjct: 187 NKYVRNDIRNRLLPAINQNADLDSTHLLKLKRWHDIQLQESRKKAQSFIENDCLINKNGT 246

Query: 249 IIAISQDILNIDSTLLFYLLRVSA 272
            I  S++  N    +   +L    
Sbjct: 247 QIQFSRNAFNQLDDIAKMILLDQL 270


>gi|319787808|ref|YP_004147283.1| tRNA(Ile)-lysidine synthetase [Pseudoxanthomonas suwonensis 11-1]
 gi|317466320|gb|ADV28052.1| tRNA(Ile)-lysidine synthetase [Pseudoxanthomonas suwonensis 11-1]
          Length = 443

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 136/389 (34%), Gaps = 30/389 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +L     ++V  SGG DS  LL AL +  + R+ G     A+ V H L   A D   +
Sbjct: 9   FDALPATGALVVGFSGGLDSSALLHALAAEPAIRARG---LRAVHVHHGLHADAGDWAAH 65

Query: 73  VSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                +   +   V+  +  +    GL  AAREARYA +          +++TAH  DDQ
Sbjct: 66  CLRQAAAWGVPLQVIEVQVPADAGLGLEGAAREARYAALLSTL--GPGEVLVTAHHLDDQ 123

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET  +R+ R    +G+G       +      W  RP L   R  +        ++W +D
Sbjct: 124 AETFLLRALRASGPEGLGAM---RPLRRFGGGWHWRPLLGLSRAVLEDHARAHGLAWVDD 180

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           PSN     +R  +R  V  + L   +            ++     L+ +     +     
Sbjct: 181 PSNALADADRNFLRLEVLPL-LQRRWPHAAAALARSAGLSAEADALLQEDEEALLHQHAG 239

Query: 252 IS------QDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVS 303
                   + +L++       LLR+      G   LP      +E  +L  +     C +
Sbjct: 240 EHGHTLPVELLLSLTPARRARLLRLWVRKL-GLPPLPARGIDRIEHELLQARPDAEACFA 298

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKAD 363
                + R    L   +    LP      + +  WDG    +      +       +   
Sbjct: 299 WSGARVLRWRGLLHADQERPPLPA-----DWSATWDGHAPLELPGGGSLCFVDADAKDQP 353

Query: 364 VPSGIPPIIAQRALSSMPSKEGGKPLLAP 392
             +     +  RA      ++GG+ +  P
Sbjct: 354 AATAFDAPLQVRA------RQGGERIRLP 376


>gi|291557138|emb|CBL34255.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Eubacterium
           siraeum V10Sc8a]
          Length = 306

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 128/314 (40%), Gaps = 26/314 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
               ++ AVSGG+DS+ LL  L+S+  +  F     +A  V+H LR E +  + R+V  +
Sbjct: 4   KGDTVIAAVSGGADSVALLYVLYSLKDELGF---SLAACHVNHNLRGEESDSDERFVRRM 60

Query: 77  CSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           C  L I     S K +   +    L   AR  RY      +K     LI TAHT  D  E
Sbjct: 61  CRFLDIPLYTASIKVNDLRQKHDSLEECARRLRYDFFESISK---GRLIATAHTASDNCE 117

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R     G  LSG+C       N  I RP L   REDI  +  +  + +  D +
Sbjct: 118 TILINMVR-----GTALSGICGIPAKRDN--IIRPLLYNTREDIELYCSENCLDYVTDST 170

Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N  D + R ++R  V  +      +L+  + +        +  +  +  + +     +  
Sbjct: 171 NLSDDYTRNKIRHKVVPLLKEINPSLFSAISRLSQSVSDDDRYLDKIASELMEKTRTADD 230

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR---V 307
                IL      +    R+   I       P  +++E  +  +++G +G ++  +   V
Sbjct: 231 KYDVGILRTADDCILR--RIVTMIFKDNDIPPNMKAVESCVGIIRAG-QGKINPCQFRFV 287

Query: 308 VIDRRANFLWITRA 321
            I ++  F+   R 
Sbjct: 288 QIRKKKLFVVTDRE 301


>gi|187933472|ref|YP_001884417.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum B str. Eklund
           17B]
 gi|187721625|gb|ACD22846.1| tRNA(Ile)-lysidine synthase [Clostridium botulinum B str. Eklund
           17B]
          Length = 468

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 21/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
               IL+A+SGG DS+ LL  L  +   R    I+  A  ++H LR + A  +  +V + 
Sbjct: 17  SGDKILIALSGGPDSLCLLNMLKEL---REELDIEIGAAHLNHLLRGDDAFKDEEFVINT 73

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  + I   V     +K     +     A R  RY    E  K      I TAH  +DQ 
Sbjct: 74  CKEMNIPCYVKRVDINKYSKEHRLSSELAGRNVRYDFFDEILKKEGFNKIATAHNANDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+  R  R    +G+G        +Y  N  I RP L   R ++  ++ ++ ++   D 
Sbjct: 134 ETIIFRMMRGTGLEGLG-----GIKVYREN-KIIRPILCLTRTEVEKYIEEKKLNPRIDK 187

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +N +  + R ++R       L  +    + F +  VK  N +++LI K   +  R  I  
Sbjct: 188 TNFEKIYNRNKIR-------LDIIPYIQENFNEDIVKTLNRMSLLIQKDNALIERLCIKA 240

Query: 253 SQDILNIDSTLLFYLLRV 270
             +    D+   F++L+ 
Sbjct: 241 YNEYCKKDNDSKFFILKK 258


>gi|160933737|ref|ZP_02081125.1| hypothetical protein CLOLEP_02598 [Clostridium leptum DSM 753]
 gi|156867614|gb|EDO60986.1| hypothetical protein CLOLEP_02598 [Clostridium leptum DSM 753]
          Length = 320

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 136/336 (40%), Gaps = 25/336 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    ++++  + + L   + ++  VSGG+DSM LL  L S    + + ++K +A  V+H
Sbjct: 1   MITKVLKTIEAY-QMLSPDSAVVAGVSGGADSMALLHVLQS--RRKDWPELKVTAAHVNH 57

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115
           CLR   A  +  +V   C R  I   V    V  + +K + GL A  R  RY      A 
Sbjct: 58  CLRGAEADRDEEHVRRYCQREGIPLEVLKIDVREEAAKRKLGLEACGRAVRYEFFRRLAG 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                +I TAHT  D  ETV +   R     G GL G+C       N  I RP + C R 
Sbjct: 118 ENG--VIATAHTLSDLAETVLLHLTR-----GTGLKGLCGIPPVREN--IVRPLIDCSRR 168

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  +  I +  D +N + R+ R +VR  V    L AL      F++   ++  ++ 
Sbjct: 169 EIEDYCREHKIPYVTDSTNLEARYSRNKVRLQV----LPALKEINPAFEEAVGRMAQSLR 224

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYL---LRVSAAICGGQISLPGYRSMERVML 292
                        +   + +      ++L      +R+ A       S P  R +E +  
Sbjct: 225 EDDGCLCEEARELLGRAALEKGGWSCSVLSRGRKPVRIRAIRLLQGASRPEARHLEEIDR 284

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLW-ITRAVRNLPT 327
            + +G+ G    G +        L  +    R +P 
Sbjct: 285 IILAGQGGVSVPGGLDFHANRGVLRTVPHKKRKIPQ 320


>gi|29347003|ref|NP_810506.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482]
 gi|61216643|sp|Q8A7D1|TILS_BACTN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29338901|gb|AAO76700.1| putative cell-cycle protein [Bacteroides thetaiotaomicron VPI-5482]
          Length = 426

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 130/355 (36%), Gaps = 45/355 (12%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  IE    F+        +LVA+SGG+DS+ LL  LH+          +  A   +  L
Sbjct: 7   IRYIEKEHLFL----PDDKLLVALSGGADSVALLRVLHT-------AGYQCEAAHCNFHL 55

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E +  + R+V  +C +  I   +  +      ++ +  +  AARE RY    +  +  
Sbjct: 56  RGEESNRDERFVRQLCQKYGIRLHITDFNTTQYATEKRISIEMAARELRYNWFEKIKEEC 115

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A +I  AH  DD +ET+     R     G+         +   N  I RP L   RE+I
Sbjct: 116 GAHVIAVAHHQDDSVETMLFNLIRGTGITGL-------LGIRPRNGAIVRPLLCINREEI 168

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
             +L Q    +  D +N +D + R ++R       + +     ++L        D+    
Sbjct: 169 IRYLQQIGQDFVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNSLIETSNHLNDVATIY 228

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           N  +     + +T     I A+  +        LF  L                  ++ +
Sbjct: 229 NKVIDEAKTRIITPEGIRIDALLDEP--APEAFLFETL---------HPLGFNSAQIKDI 277

Query: 291 MLFL--KSGKRGCVSIGRVVIDRRANFLWITRA--VRNLPTLILYPEETTVWDGR 341
              L  + GK+      RV+ DR    L   R      LP  ++  E     D R
Sbjct: 278 ANSLHGQPGKQFVSKEWRVIKDRNLLLLETIRPEDESTLPYQLIKEEREFTPDFR 332


>gi|157962688|ref|YP_001502722.1| tRNA(Ile)-lysidine synthetase [Shewanella pealeana ATCC 700345]
 gi|157847688|gb|ABV88187.1| tRNA(Ile)-lysidine synthetase [Shewanella pealeana ATCC 700345]
          Length = 469

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 119/315 (37%), Gaps = 26/315 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++A SGG DS  L   L      ++   I+   + V H L   A    ++ +     
Sbjct: 33  RKLVLAYSGGVDSEILAHGLSQFA--KANLDIECLLVHVHHGLSLNADSWAKHCASQAQY 90

Query: 80  LRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             +  ++   +    P+  + A AR  RY  +   ++     ++MTAH  DDQLETV + 
Sbjct: 91  YELGCAIKRVEVKLAPRVSVEAQARTVRYQAL--LSELEQGDVLMTAHHQDDQLETVLLA 148

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    KG+   G      ++   W+ RP L   + +I  +  Q NIS  ED SN DD+
Sbjct: 149 LKRGLGPKGLAAMG--KVQCFEQQHWLIRPLLDFSKVEIEVYAKQHNISHIEDESNFDDK 206

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP----------KYLTVHMRS 248
           ++R  +R  V    +  L  +         +     A+               L  H   
Sbjct: 207 YDRNFLRLEV----IPTLKQRWSAIAATASRSAEICALQQSVIDEETAVRLPQLQHHKAG 262

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305
              +  D L   S     LL        G    P     E +   +L  K+     + + 
Sbjct: 263 ECTLDLDKLATYSKAWQSLLLRGHMESLGFA-PPSKVQGEEILTQLLEAKADASVEIRLA 321

Query: 306 RVVIDR-RANFLWIT 319
            VVI R + +  +++
Sbjct: 322 DVVIRRFKRDGYFLS 336


>gi|148269484|ref|YP_001243944.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1]
 gi|147735028|gb|ABQ46368.1| tRNA(Ile)-lysidine synthetase [Thermotoga petrophila RKU-1]
          Length = 419

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 16/259 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LVAVSGG DSM LL  L          KIK +A  +DH +RE+++ +  +V  +C + 
Sbjct: 12  HVLVAVSGGIDSMTLLYVLKKFSP---LLKIKITAAHLDHRIRESSRRDREFVERICRQW 68

Query: 81  RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +                   L   ARE RY  +   AK + AT I  AH  +D LETV 
Sbjct: 69  NVPVETSEVDVPSLWKDSGKTLEEIARELRYDFLRRTAKKVGATKIALAHHKNDLLETVV 128

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G+         +        RPFL  +R +I  +  ++ + +  D +N D
Sbjct: 129 HRLIRGTGPLGLA-------CISPKREEFIRPFLVFKRSEIEEYAREKGVPYVVDETNYD 181

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD- 255
            ++ R  +R  +  + +  L   ++      V V   +   + + +   +   +   +D 
Sbjct: 182 VKYTRNFIRHRIVPL-MKELNPTVEDAVYRLVSVTLLLRNFVERTVQDFVERNVYFYKDY 240

Query: 256 ILNIDSTLLFYLLRVSAAI 274
            +  +    F+ L V+  +
Sbjct: 241 AVFAEPEDPFFFLEVTRWV 259


>gi|281411798|ref|YP_003345877.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10]
 gi|281372901|gb|ADA66463.1| tRNA(Ile)-lysidine synthetase [Thermotoga naphthophila RKU-10]
          Length = 431

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 108/259 (41%), Gaps = 16/259 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+LVAVSGG DSM LL  L          KIK +A  +DH +RE+++ +  +V  +C + 
Sbjct: 24  HVLVAVSGGIDSMTLLYVLKKFSP---LLKIKITAAHLDHRIRESSRRDREFVERICRQW 80

Query: 81  RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +                   L   ARE RY  +   AK + AT I  AH  +D LETV 
Sbjct: 81  NVPVETSEVDVPSLWKDSGKTLEEIARELRYDFLRRTAKKVGATKIALAHHKNDLLETVV 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G+         +        RPFL  +R +I  +  ++ + +  D +N D
Sbjct: 141 HRLIRGTGPLGLA-------CISPKREEFIRPFLVFKRSEIEEYAREKGVPYVVDETNYD 193

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD- 255
            ++ R  +R  +  + +  L   ++      V V   +   + + +   +   +   +D 
Sbjct: 194 VKYTRNFIRHRIVPL-MKELNPTVEDAVYRLVSVTLLLRNFVERTVQDFVERNVYFYKDY 252

Query: 256 ILNIDSTLLFYLLRVSAAI 274
            +  +    F+ L V+  +
Sbjct: 253 AVFAEPEDPFFFLEVTRWV 271


>gi|194467678|ref|ZP_03073665.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri 100-23]
 gi|194454714|gb|EDX43611.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri 100-23]
          Length = 464

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 135/308 (43%), Gaps = 17/308 (5%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E  RFF         ++VAVS G DSM LL  L  + S     + +     ++H 
Sbjct: 8   FERHLERSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLPSK---NRPQIIVAHMNHQ 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR+ ++ E R++   C R  +  +V  W ++  PQTG+  AAR+ARY    E  K   A 
Sbjct: 61  LRKQSQLEERFIRQYCKRNDLKLAVAHWPQDLHPQTGVENAARQARYHFFREVMKDNQAR 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  +D  ET+ M+  R        L G+ D   +     + RP L   ++ ++ +
Sbjct: 121 ILITAHHQNDLAETMLMKMTRGGQL--SQLVGIRDRRPFASG-TLIRPLLPFSKQQLKKY 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---ML 237
            LQ ++ W ED +N D   +R R R  +  +        +   ++   ++ + +A     
Sbjct: 178 ALQHHLKWYEDKTNKDLNIQRNRFRHAIIPMLEKENPQLLSHLENYHQQLTDLLAWRDQA 237

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
           +   L   +     +    L  +  ++   +LR      G  +     + ++ ++  L++
Sbjct: 238 VADQLAACVDQQGRMILARLAKNKEIIRKEILRQWFNQQG--MYDIKDQQLDELLQSLEN 295

Query: 297 GKRGCVSI 304
            K+   +I
Sbjct: 296 KKKPQQTI 303


>gi|167624879|ref|YP_001675173.1| tRNA(Ile)-lysidine synthetase [Shewanella halifaxensis HAW-EB4]
 gi|167354901|gb|ABZ77514.1| tRNA(Ile)-lysidine synthetase [Shewanella halifaxensis HAW-EB4]
          Length = 476

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 19/312 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +++A SGG DS  L   L      +     +   + V H L   A     +     
Sbjct: 38  PKPKLVLAYSGGVDSEILAHGLAQFA--KVSPHFECLLVHVHHGLSANADTWAEHCLTQA 95

Query: 78  SRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               +  +V   +    P+  + A AR  RY  +   ++  N  ++MTAH  DDQLETV 
Sbjct: 96  KHYDLDCTVKRVEVKLAPRLSVEAQARSVRYEAL--LSELSNNDILMTAHHQDDQLETVL 153

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R    KG  LS M     ++   WI RP L C +++I ++  +  I+  +D SN D
Sbjct: 154 LALKRGLGPKG--LSAMGKVQRFNQQHWIIRPLLDCSKDEIEAYAKRYEITHIQDESNFD 211

Query: 197 DRFERVRVRRFVRD---IDLHALYLKMKKFQDL----RVKVNNAVAMLIPKYLTVHMRSI 249
           D+++R  +R  V         ++     +  +L    +  ++  +A+ +P          
Sbjct: 212 DKYDRNFLRLDVIPKLKQRWPSIAATTSRSAELCALQQSVLDEEIALKLPNIQLRKGNDW 271

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGR 306
           +   + +    S     LLR      G   + P     E+++  L   K+     + +  
Sbjct: 272 VLDLERLAQYSSAWQSLLLRGHMDALG--FAPPSKVQGEQILAQLLDAKADANVEIRLTD 329

Query: 307 VVIDRRANFLWI 318
           V+I R  +  + 
Sbjct: 330 VIIKRFKSEGYF 341


>gi|254468050|ref|ZP_05081456.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13]
 gi|207086860|gb|EDZ64143.1| tRNA(Ile)-lysidine synthase [beta proteobacterium KB13]
          Length = 441

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 134/337 (39%), Gaps = 26/337 (7%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F  + L    H+LV VSGG DS+ L   L  +   RS      + I VDH L   +K   
Sbjct: 12  FLKQKLKKNCHLLVGVSGGIDSVVLGHTLSQL---RSLHPFDLTFIYVDHQLHPESKQWA 68

Query: 71  RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             V  +  +L I +       +   + G   AAR+ RY       +     +++ A   D
Sbjct: 69  NTVKQLAKKLSIEYICEKVTIDQDLKLGTEGAARKHRYQAF----QKHQKDILVLAQHED 124

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQLET+ ++  R    KG  LS M +   Y   L I RP L   +  I  +  +  + + 
Sbjct: 125 DQLETLLLQLARGAGSKG--LSCMPE---YHEKLKIWRPLLGVSKNLIYRYQQEHKLKFI 179

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           ED SN D++++R  +R  V  +    +  +   F     +    +A        +     
Sbjct: 180 EDSSNKDNKYDRNYLRNKVIPL----IKKRFPHFATTSGRSVKHIADAYNYQNLMSAELY 235

Query: 250 IAISQDILNIDSTLLFYLLRVS------AAICGGQISLPGYRSMERVMLFLKS-GKRGCV 302
             + +D   ++   L  L            +   Q+ +P  + + +++  +K      C+
Sbjct: 236 ENVLEDNNQLNGLKLKKLSDYDMGNVIRFWLNEHQVLMPSIKVLGQIISQIKKIDLESCI 295

Query: 303 S--IGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
           +  +  + I    N L++   + N    +L+ ++ +V
Sbjct: 296 NIKVDGMSIRSYNNSLFLITNLENSFNPVLWKDQNSV 332


>gi|50086047|ref|YP_047557.1| cell cycle protein [Acinetobacter sp. ADP1]
 gi|61216503|sp|Q6F880|TILS_ACIAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49532023|emb|CAG69735.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ADP1]
          Length = 459

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 158/389 (40%), Gaps = 33/389 (8%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           R  +++  +PA    L+  SGG DSM LL  +  +   +        AI +DH L+ +++
Sbjct: 19  RLLIQAQQFPADTVFLIGCSGGMDSMLLLHLMSELFPHK------VRAIYIDHQLQSSSR 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
               +V +   +  I  ++           L   AREARYA    H K+    +++ AH 
Sbjct: 73  AWGVFVQNFAQQSHIPFTIQPVIVD--TGNLENQAREARYAAFESHLKSN--EVLVLAHH 128

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             DQ ETV +R       KG+G       I    N+   RP L   R+ I  ++    I 
Sbjct: 129 QQDQTETVLLRLLSGSGVKGLGAM---KEIEQKKNICCWRPMLSVSRQQIEHWVEHLKIP 185

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           + +D +N D  ++R   R  V  + L   + KM++       +      ++ + L   + 
Sbjct: 186 YIQDLTNFDTTYDRAWCRETVWPV-LQKRFPKMQEAISRTSILMQDADEILHEVLQQDLN 244

Query: 248 SIIAISQDILNIDSTLLFYLLR----VSAAICGGQISLPGYRSMERV---MLFLKSGKRG 300
               +  + L++       L R    +S  + G  I  P +  +ERV   ++  K+  + 
Sbjct: 245 QCGDL--NHLDLSRLQQLSLARQRQLLSFWMKGKAIYRPAFEMVERVQQEVICAKADAKA 302

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360
            +        R  N L+     + L   ++    +T        +   D+ +Q+    ++
Sbjct: 303 ALHWNHHYYVRYQNILYRVEKNKYLQKDLVSNVVST-------IELQMDASLQLASGVFQ 355

Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPL 389
              +  G+ P + ++ L  +P ++GG+ +
Sbjct: 356 IQPMQMGLSPQLFEQPLQLLP-RQGGEKI 383


>gi|225445226|ref|XP_002280934.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 687

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 128/316 (40%), Gaps = 30/316 (9%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIA--------LHSVLSDRSFGKIKFSAISVDHC 61
           R  +  L     I + VSGG DSM L I         L++    R F      AI VDH 
Sbjct: 72  RMAMAGLKPHHRIALGVSGGPDSMALCILTADWKTNGLNTAGESRGFID-GLLAIIVDHG 130

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYALISEHAKTIN 118
           LR  +KDE   V    S + I   +    W + KP+ G L  AARE RY +         
Sbjct: 131 LRAESKDEANIVRHRVSDMGIRCEIAQCDWLDGKPKQGHLQEAAREMRYQIFQNVCIQHQ 190

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----------DTILYDLNLWISR 167
             +++ AH  DDQ+E   +R  RD    G+                 D    + ++ + R
Sbjct: 191 IGVLLVAHHADDQVELFILRLSRDSGVLGLAGMAFASQLFSTYTNYFDEASDNYSILLVR 250

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI----DLHALYLKMKKF 223
           P L   +ED+       N  W EDP+N +  F R R+R  +R++      + L   +   
Sbjct: 251 PLLEFSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLPSCTFKYELQAVISAC 310

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN---IDSTLLFYLLRVSAAICGGQIS 280
           +  R  V+   + LI + ++V  +    I  +IL+   I+   L   + +       +  
Sbjct: 311 RKTRAYVDQICSNLINEVVSVMAQGYAVIDLEILHPSKIEDICLSKFIALVLQFISQRHR 370

Query: 281 LPGYRSMERVMLFLKS 296
                + + ++ ++++
Sbjct: 371 PVRGSTSKLLLDYIRT 386


>gi|32491148|ref|NP_871402.1| hypothetical protein WGLp399 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|61217353|sp|Q8D2F5|TILS_WIGBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|25166355|dbj|BAC24545.1| mesJ [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 400

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 146/324 (45%), Gaps = 22/324 (6%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIAL----HSVLSDRSFGK--IKFSAISVDHCL 62
           ++ F + + Y    ++A SGG DS  LL  +      + ++ +F K   KF A+ ++H +
Sbjct: 2   LKKFFKEISYKKSYVLAFSGGLDSTVLLHMISLYIKKIKNNNNFFKKIFKFRAVYINHNI 61

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
            + +K    +  D C + ++    ++   S    G+ ++AR  RY  +          ++
Sbjct: 62  CKESKYWSNHCHDQCLKYKVFFKSINIFISDFSEGIESSARRERYKALFSDLNPE--EVL 119

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAH  DDQ+ET+ +  +R    +G  +SGM     +D ++ I RP L C++EDI+ + +
Sbjct: 120 ITAHHQDDQIETILLSLKRGSGPRG--ISGMQSIKKFDSHI-IKRPLLHCKKEDIKLYAI 176

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           + N++W +D SN + +F+R  +R  +  + L   +  +        K+      L+ + L
Sbjct: 177 KHNLNWIDDKSNLNIKFDRNFLRSEIIPL-LKKRWPNIGNTISRSAKLCFDQEKLLNELL 235

Query: 243 TVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFL 294
              + S++   +     ++  +     F +LR    +      +P    ++ +    +  
Sbjct: 236 KDTLNSLVEKDKSLKFIELFKMSEIKRFAILRKWFCL--NNFKMPSLSQLKHIWKNVIIS 293

Query: 295 KSGKRGCVSIGRVVIDRRANFLWI 318
           K   +  + I   +I R    L+ 
Sbjct: 294 KKDSKAEIKINNNIIKRFKKNLYF 317


>gi|303228874|ref|ZP_07315687.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516494|gb|EFL58423.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-134-V-Col7a]
          Length = 320

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 131/314 (41%), Gaps = 18/314 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
             + A ILVA SGG DSM LL  L  V   R   +      ++DH +R  +  E++ V+ 
Sbjct: 12  FPHEARILVACSGGPDSMVLLHVLQYVKVHRK-ARWTIGVTTMDHSIRRESLSELQMVAS 70

Query: 76  VCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            C++  +        +     + +  L    R  RY   +E A   +   I+TAH  DDQ
Sbjct: 71  YCNKNNLPFWGVKKDIPTIAGERKESLETVGRCERYKWFNELAAREHYDYIVTAHHKDDQ 130

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+     R    KG  ++GM   I +D  + I RP L   +++I  +   ++I +C D
Sbjct: 131 GETILAHILRGSGIKG--ITGMS-VISHDYTVPIVRPLLSVTKDEILEYARLQDIEYCVD 187

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            SN D ++ R R+R  V    +  L        D   ++ +   +          R  I 
Sbjct: 188 ASNEDVKYNRNRIRHEV----IPTLQTINPNVVDALCRLGDIAQVDEAYLNGESQRLFIQ 243

Query: 252 ISQDILNID--STLLFYLLRVSAAICGGQISLP----GYRSMERVMLFLKSGKRGCVSIG 305
           + Q + N    S      L ++      Q+ +P         E++   +++G+    +I 
Sbjct: 244 LVQSVDNGFQVSRRCMRALPLAMQRRLWQLMIPSVSLSLAHQEQLAHIIRTGEAKTFTIQ 303

Query: 306 RVVIDRRANFLWIT 319
           +V I+ + + + + 
Sbjct: 304 KVTINAQCDTILVY 317


>gi|302187915|ref|ZP_07264588.1| PP-loop [Pseudomonas syringae pv. syringae 642]
          Length = 445

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 108/309 (34%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +   AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQPAADAWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   +  AAR+ARY+  S+        +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVQV-EPGASIEQAARKARYSAFSQRLAE--GEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R  +  +  +  ++W +DPSN D +F R  
Sbjct: 145 GVRG--LAAMPDRRVLGRG-HLLRPLLDVSRMQLEDYARRHGLNWIDDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260
           +R  V  +                  +  A  +L    L     +  A S   + +    
Sbjct: 202 LRSQVLPLLTSRWPQASASLARTARHLGEAQQLLDEIALQDIANAQAATSFGWVGLPVLS 261

Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                   +      LR   A          +   E +             +    + R 
Sbjct: 262 LGPIAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDAGPLWRLAEGTLHRA 320

Query: 313 ANFLWITRA 321
             FLW   A
Sbjct: 321 QGFLWWVPA 329


>gi|297738821|emb|CBI28066.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 128/316 (40%), Gaps = 30/316 (9%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIA--------LHSVLSDRSFGKIKFSAISVDHC 61
           R  +  L     I + VSGG DSM L I         L++    R F      AI VDH 
Sbjct: 72  RMAMAGLKPHHRIALGVSGGPDSMALCILTADWKTNGLNTAGESRGFID-GLLAIIVDHG 130

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYALISEHAKTIN 118
           LR  +KDE   V    S + I   +    W + KP+ G L  AARE RY +         
Sbjct: 131 LRAESKDEANIVRHRVSDMGIRCEIAQCDWLDGKPKQGHLQEAAREMRYQIFQNVCIQHQ 190

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----------DTILYDLNLWISR 167
             +++ AH  DDQ+E   +R  RD    G+                 D    + ++ + R
Sbjct: 191 IGVLLVAHHADDQVELFILRLSRDSGVLGLAGMAFASQLFSTYTNYFDEASDNYSILLVR 250

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI----DLHALYLKMKKF 223
           P L   +ED+       N  W EDP+N +  F R R+R  +R++      + L   +   
Sbjct: 251 PLLEFSKEDLYKICEGGNQEWVEDPTNQNPSFARNRIRLSLRNLPSCTFKYELQAVISAC 310

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN---IDSTLLFYLLRVSAAICGGQIS 280
           +  R  V+   + LI + ++V  +    I  +IL+   I+   L   + +       +  
Sbjct: 311 RKTRAYVDQICSNLINEVVSVMAQGYAVIDLEILHPSKIEDICLSKFIALVLQFISQRHR 370

Query: 281 LPGYRSMERVMLFLKS 296
                + + ++ ++++
Sbjct: 371 PVRGSTSKLLLDYIRT 386


>gi|255013262|ref|ZP_05285388.1| putative cell-cycle protein [Bacteroides sp. 2_1_7]
          Length = 438

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 137/343 (39%), Gaps = 32/343 (9%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I ++R ++   R L     +LV +SGG+DS+ LL  L  +            A+  +  L
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E +  +  +  +    L +    + +       +    +  AARE RYA   E  + +
Sbjct: 55  RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGEKHLSIEMAARELRYAWFEEMRERL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
                  AH  DD +ETV M   R    +GM       + +   N +I RP L   REDI
Sbjct: 115 GGQATAVAHHRDDNVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++L  +  ++  D +N  D + R  +R  V  + L  +    +     R   + + A  
Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294
           I  Y+    R  + +S D L+I + + F     +        G   L        +    
Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336
           + GK    S  R++ DR  ++LWIT    +   T +L PE+  
Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITSLEKKEKRTFVLDPEKGI 324


>gi|89891402|ref|ZP_01202908.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
 gi|89516433|gb|EAS19094.1| tRNA(Ile)-lysidine synthase [Flavobacteria bacterium BBFL7]
          Length = 443

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 21/265 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  +  E +     +L     +L+A+SGG DS+ L   L +            +    + 
Sbjct: 1   MLAAFQEHLHLHFSNL-KENRLLIAISGGLDSVVLTHLLFN-------AGYDITLAHCNF 52

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR+  +  + ++V ++  R +I   V  ++     S        AARE RY   ++  K
Sbjct: 53  NLRDSESDQDEQFVRELADRFKIDCHVTQFETSQYASDHGVSTQMAARELRYDFFNDLCK 112

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             N   I+TAH  DDQ+ET ++   R    KG+         +  LN  + RP L   RE
Sbjct: 113 DHNYDFILTAHHLDDQIETFFINLNRGAGLKGL-------QGIPQLNGNVIRPLLPFSRE 165

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            I  + +   + W ED SN  ++++R ++R  +  +   AL      F      +  +  
Sbjct: 166 QIMEYAMNSQVLWREDSSNRSNKYQRNQLRNQILPLLHKALPQLKTHFAQSLDYLKGSQD 225

Query: 236 MLIPKYLTVHMRSIIAISQDILNID 260
            L+   +     S+I  +   +NI+
Sbjct: 226 -LVDDAVARFRESVIKTTTTGININ 249


>gi|218782103|ref|YP_002433421.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763487|gb|ACL05953.1| tRNA(Ile)-lysidine synthetase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 480

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 129/358 (36%), Gaps = 31/358 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           S +E VR  +     L   A +L  VSGG DS  L+  L  +  +     ++     V+H
Sbjct: 12  SFLEKVRQALYEQGLLFRGARVLAGVSGGPDSTALVHVLSRLQKE---FALQLGVAHVNH 68

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHS--VVSWKNSKPQTG--LMAAAREARYALISEHAK 115
           CLR E +  +  +V ++ + L +      V    ++ ++G  L  AAREAR A  S   +
Sbjct: 69  CLRGEESDRDALFVQELANSLDVPFHMETVDVAAARKESGLSLEEAAREARKAFFSRAMQ 128

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +   H  DD  E + +   R     G+       + +  +N    RP  +  R+
Sbjct: 129 EHGYDFVALGHHADDNAEWMLISLIRGAGAGGL-------SGIPPVNGKTVRPLFKLTRK 181

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227
           +I  +  +  + W +D +N D    R ++R  +  I         +  L       ++  
Sbjct: 182 EILKYCRENALKWVQDSTNQDQSILRNQIRLHLLPILESQYNPAIVPGLNRLSNILREEH 241

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
           + ++      +  +       +      ++     L   ++  + A   G      +  +
Sbjct: 242 LWMDGMARDFLEDHAKPIKNGLELSLVHLVKQPLALQRRIVLQAMAEVRGNTRKTSWTHV 301

Query: 288 ERVMLFLKSGKRG-CVSI-GRVVIDRRANFL-WITRAVRNLPTLILYP--EETTVWDG 340
             V+     GK G  V +   +   R    L +I     +       P  E   V DG
Sbjct: 302 HDVLKLACQGKSGSQVHLPDGLEARRVQRKLEFILHDSPDWARTPSQPAKEWRVVLDG 359


>gi|310779129|ref|YP_003967462.1| tRNA(Ile)-lysidine synthetase [Ilyobacter polytropus DSM 2926]
 gi|309748452|gb|ADO83114.1| tRNA(Ile)-lysidine synthetase [Ilyobacter polytropus DSM 2926]
          Length = 446

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 127/319 (39%), Gaps = 29/319 (9%)

Query: 3   LSPIESVRFFV-RSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  IE VR FV R+ +  +   IL+  SGG DS+ L  AL  +  +    K++ +   ++
Sbjct: 1   MEVIERVREFVLRNDLVGSGEKILLGFSGGPDSVFLFEALLDLKEE---FKLEIAIAHIN 57

Query: 60  HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHA 114
           H LR + +  +  +   +  +  I + V      K       G   A R  RY    + +
Sbjct: 58  HLLRGDESDGDEEFCRQLAEKNGIKYYVKKADIKKYSRQHGIGEEEAGRSIRYDFFYKIS 117

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +  AH  DDQ+ET   R  R  + +G+      + I    +++I RP     +
Sbjct: 118 KEWGADKVALAHNKDDQVETFLFRMMRGTSLEGL------EGIPVRRDIFI-RPLSEVYK 170

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKV 230
           +DI  +L    I +  D SN ++ + R  +R     F+ D        K+    +   + 
Sbjct: 171 KDILGYLDSNKIEYRIDSSNLENTYTRNSIRLDLIPFIEDKYNANFKEKIFSLIEEIKEA 230

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           N  + + I  Y+      +  + +        ++   L+                 +E +
Sbjct: 231 NKLLKVNISDYIENEKLDLKKLEELHEYQKRKVINEFLKKYKIEI-------TREKLENI 283

Query: 291 MLFLKSGKRGCVSIGRVVI 309
           +  LK G    +S+G+ ++
Sbjct: 284 LDILKKGGSKKLSLGKNIV 302


>gi|169830304|ref|YP_001716286.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637148|gb|ACA58654.1| tRNA(Ile)-lysidine synthetase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 470

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 141/387 (36%), Gaps = 38/387 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R L     +LV VSGG DS+ LL  L+ +   R+   I  +   ++H LR   A+ + RY
Sbjct: 15  RMLEPGMGVLVGVSGGPDSVALLDVLYGL---RAVLGISITVAHLNHRLRGAEAEADARY 71

Query: 73  VSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V  +  +  +   V    V       +  +  AARE RY   +  A+   A  +   H  
Sbjct: 72  VRKLAEKFGLPCIVEECDVPTFRKAERLSIQTAARELRYEFFARAARETGARRVALGHHA 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET+     R     G+         +  +     RP L  RR +I ++   R +  
Sbjct: 132 DDQAETILHHFLRGTGPAGLA-------GIAPVRGLFIRPLLGIRRREIEAYCRARGLDP 184

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
             DPSN D  + R R+R  +  +        L   + +  ++    N+ +          
Sbjct: 185 RLDPSNLDPVYTRNRLRAELLPLLETEYNPNLVTALLRLGEICRAENDYMEEQTETIFRR 244

Query: 245 HMR---SIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
                   + +  D +  +   +   ++R + +   G      +  +ERV+   ++    
Sbjct: 245 SAAPTDGCVRLDADRVAALPPAIGRRMIRRAWSELAGDPGALDFDHVERVLELARAAA-- 302

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP-TLILYPEETTVW------DGRYQFQNLSDSLIQ 353
               G   +D     + + R    L  +L   P E   W       GR +   +   LI 
Sbjct: 303 ----GGKRLDLPR-GIRVERQFAALVFSLGPDPAEYGAWHYVLVVPGRTELPEVG-LLIT 356

Query: 354 IGPQSYRKADVPSGIPPIIAQRALSSM 380
              +   +A  P  + P  A   L ++
Sbjct: 357 TDIRPAEQAWRPETLQPGQAAVDLDTL 383


>gi|189461602|ref|ZP_03010387.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136]
 gi|189431712|gb|EDV00697.1| hypothetical protein BACCOP_02261 [Bacteroides coprocola DSM 17136]
          Length = 426

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 124/331 (37%), Gaps = 32/331 (9%)

Query: 1   MFLSP----IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           MF       I     F RS      ILVA+SGG+DS+ LL  L               A 
Sbjct: 1   MFRQKVIQYINEKHLFHRS----DKILVALSGGADSVALLRVLL-------LEGYNCVAA 49

Query: 57  SVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALIS 111
             +  LR E +  +  +V ++C  L +   V+ +      S+ +  +  AARE RY    
Sbjct: 50  HCNFHLRGEESDRDEEFVQNLCRGLDVPLQVIHFDTNGYASRKRISIEMAARELRYEWFE 109

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +    + A++I  AH  DD +ET  +   R     G+         +  +N  + RP L 
Sbjct: 110 QVRLQVGASVIAVAHHRDDSVETFLLNLVRGTGINGL-------KGIAAVNGKVVRPLLD 162

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             R+DI +FL      +  D +N +D + R ++R  V  +         +   +   +++
Sbjct: 163 VSRDDILAFLADLKQDYVTDSTNLEDEYLRNKLRLNVIPLLKEINPSVCESITETARRLS 222

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISLPGYRSMERV 290
           +  A+      TV     +   +   +I   +     L V   +            ++ +
Sbjct: 223 DVEAVYRKSIQTVCTE--VTEREGKFSISRIMKAVAPLAVLFELL--HPYGFNAVQLKNI 278

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
              L +           V+ R  ++L++ R 
Sbjct: 279 YRSLGTESGKLFYSENYVLLRDRDYLFLKRR 309


>gi|91201108|emb|CAJ74167.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 482

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 112/257 (43%), Gaps = 8/257 (3%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRY 72
            L+ P   ++V VSGG DS+ LL  LH + + ++  +++     ++H LR   ++++ ++
Sbjct: 18  QLIQPDDSVIVGVSGGPDSVALLKTLHFLNAAKNL-RLRLYVAHLNHQLRGDFSEEDEQF 76

Query: 73  VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V D+ ++L +             S+ +  L   AR+ RY   SE ++  N + + T H  
Sbjct: 77  VQDLANKLSLPFISKRVNIGKIASETKLSLEEMARKERYTFYSEASQNYNVSHVATGHNA 136

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD  ET+  R  R     G+G   +   +       I RP L   +++I  +L +    +
Sbjct: 137 DDNAETILHRIIRGTGAPGLGGIPIKRLLSPGTPQLIIRPLLFAWKKEILEYLNKDKTKY 196

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIPKYLTVHMR 247
             D SN +  + R R+R  +  +  H     +K     L   +      L+    +V   
Sbjct: 197 RVDASNYEKEYTRNRIRHELIPLLEHKYNPNIKNALSRLSQILTINNEYLLAACESVFEN 256

Query: 248 SIIAISQDILNIDSTLL 264
           +I+    +   +++  L
Sbjct: 257 AIVKEPDNAYVLNAGFL 273


>gi|313203122|ref|YP_004041779.1| tRNA(ile)-lysidine synthetase [Paludibacter propionicigenes WB4]
 gi|312442438|gb|ADQ78794.1| tRNA(Ile)-lysidine synthetase [Paludibacter propionicigenes WB4]
          Length = 441

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 64/323 (19%), Positives = 133/323 (41%), Gaps = 38/323 (11%)

Query: 7   ESVRFFV--RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V+ ++  + L+ P A ++V VSGG+DS+ LL  LH +         +      +  LR
Sbjct: 3   QKVQSYIERQQLLNPKARVIVGVSGGTDSVVLLHILHVL-------GYECVVAHCNFHLR 55

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
            E +  +  +V  +   +++    + +       +    +  AAR+ RY    +  K ++
Sbjct: 56  MEESDRDEEFVRALSKTMKLPFYSIDFDTVSYADRHGISIEMAARDLRYEWFHDLLKKLD 115

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I  AH  DD +ET+ M   R    +G+       + +   N  + RP L C R+++ 
Sbjct: 116 AEAIAVAHHADDSIETMLMNLVRGTGLRGL-------SGIRPRNKKVIRPLLCCNRQELE 168

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVN 231
           ++L++ ++   ED +N    ++R + R  V  +           LY  +K+F +    + 
Sbjct: 169 NYLIRYDLEHVEDSTNASVDYQRNKFRNEVLPLLEEINPSLRQTLYESLKRF-EGTTAIY 227

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
                 I + +      +  ++ DI+     +   +  +               ++E+V 
Sbjct: 228 AQAIDTIREKIAETADGLTKLNIDIIKQQVHIPTVMYEIL------HPFGFSGATIEQVT 281

Query: 292 LFLKS--GKRGCVSIGRVVIDRR 312
             L +  GK       R++ DR+
Sbjct: 282 ENLDAVSGKTFYSDTHRLIKDRK 304


>gi|332883365|gb|EGK03648.1| hypothetical protein HMPREF9456_01715 [Dysgonomonas mossii DSM
           22836]
          Length = 441

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/276 (22%), Positives = 115/276 (41%), Gaps = 27/276 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +  +E      + L   + ++V VSGG+DS+ LL  LHS+       K K      + 
Sbjct: 1   MNIVQVEQYIDEHQLLEDGSKVIVGVSGGADSVALLDILHSL-------KYKCVVAHCNF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
            LR E +  +  +V ++C +  + +  V +            +  AARE RY    +   
Sbjct: 54  HLRGEESNRDAFFVEELCQKYNLKYERVDFDTEAYAEIHSISIEMAARELRYNWFEQIRT 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  I  AH  DD +ET+ +   R    +G+       T +   N  I RP L   R+
Sbjct: 114 IHLADKIAVAHHRDDSVETILLNLIRGTGIRGL-------TGIAAQNNNIIRPLLCLSRK 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           DI  +L  R + + +D +N +D + R ++R  +  +    L       +D  ++      
Sbjct: 167 DILEYLKDRGLKYVDDSTNNEDLYTRNKIRLNIIPL----LETINPSVKDSIIRTGEH-- 220

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
             + +   ++   I  +  D+L+ DS  +  L++  
Sbjct: 221 --LSQVENIYNFYIQQVKADVLSDDSINIRTLIKYL 254


>gi|21672395|ref|NP_660462.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090671|sp|Q8KA23|TILS_BUCAP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21623002|gb|AAM67673.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 445

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 134/316 (42%), Gaps = 19/316 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  LL  +  +       +IK  AI ++H L  ++K    +   +C + +I
Sbjct: 15  LIAYSGGIDSTVLLYKMLKIKEKN--PQIKIRAIHINHNLHPSSKKWEEHCIKICHKYKI 72

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                  K    +  +    R  RY  I  +   +N  +++T H  +DQ ET+++  +R 
Sbjct: 73  PIITKEIKIL-LKKNIEETLRIKRYNTIYNYL--LNDEILLTGHHLNDQCETLFLSLKRG 129

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLSGM           I RPFL   +++++ +  + N+   ED SN +  ++R 
Sbjct: 130 SGP--TGLSGMSIENFLGKK-RIVRPFLTKTKKELQKWACENNLESIEDFSNFNIDYDRN 186

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257
            +R  +  I        +K      V +      L   +L   ++++I        Q+  
Sbjct: 187 FIRHKLIPILEQRWPFFLKNCFRTTV-ICREETKLKNIFLKEKIQNLINFDESLNIQNFK 245

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRAN 314
           NI+  +   L+R   ++    I +P Y+++E +   ++  K      + I +  I R   
Sbjct: 246 NINKEVCKALIRYWISL--KNIKMPSYKTIECIYNEIICSKKDSNPKIIIDKNEIRRYKT 303

Query: 315 FLWITRAVRNLPTLIL 330
            L+  +  +++  + L
Sbjct: 304 SLYFIKIQKDISNIFL 319


>gi|166711443|ref|ZP_02242650.1| cell cycle protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 434

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 131/354 (37%), Gaps = 19/354 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    C
Sbjct: 13  PPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRSC 69

Query: 78  SRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             L++   +V  +  +    GL AAAR AR+   +          +  AH  DDQ ET  
Sbjct: 70  DALQVPLQIVRVQVERDSGLGLEAAARNARHIAFAHTLAA--GEWLTLAHHRDDQAETFL 127

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +R+ R    +G+             N  + RP L   R D+ ++ L + + W EDPSN D
Sbjct: 128 LRALRASGPEGLAAM---RPQRPFANGTLWRPLLAHSRADLLAYALAQKLRWIEDPSNAD 184

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAIS 253
              +R  +R  V  +                    +A A+L+ + + +      +  A+ 
Sbjct: 185 PHHDRNFLRSQVLPLLQQRWPQAADALARSAQLSADASALLLQQDMALLPSVRTASGALD 244

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDR 311
              L          L  +         LP     ++ER +    + ++ C +  +V + R
Sbjct: 245 LHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVRR 304

Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
               L++ R     PT     +    WDG    Q    + +++   +  +   P
Sbjct: 305 WRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQLPDGAQLRLLGATGLRFAQP 353


>gi|332879744|ref|ZP_08447434.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682263|gb|EGJ55170.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 434

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 117/311 (37%), Gaps = 30/311 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSD 75
           +    +LVA+SGG DS+ L   L+S  ++             +  LR E +  +  +V  
Sbjct: 9   LKHQRVLVAISGGIDSVVLAHLLYSHGAE-------VILAHCNFSLRGEESDGDEAFVRS 61

Query: 76  VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              RL +   V  +       + Q     AARE RY      A+      I TAH  +D 
Sbjct: 62  FAERLGVQLLVERFDTHAYAKEHQLNTQLAARELRYEWFDRMAQAYACAYIATAHHANDN 121

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET  +   R     G+         +   N  + RP L   R+ I  +   + +SW ED
Sbjct: 122 LETFLINLSRGSGLDGL-------LGIPQQNGKLIRPLLSFSRQQIYQYAQAKQLSWRED 174

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-- 249
            SN  +++ R  +R  +     +     ++ F   +  ++ +   +      +       
Sbjct: 175 SSNASNKYVRNVIRHEIIPQLRYVHPNYLENFNQTQEYLHQSARFIDYYIEKIRNECFQG 234

Query: 250 --IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
             I IS   L     L   L R+        +     + +++++   ++GK  C    ++
Sbjct: 235 DPIRISPSPLLQVPELPLVLHRLFYPYGFNNV-----KDLQQLLFTAEAGKMLCSPSHQL 289

Query: 308 VIDRRANFLWI 318
           + D    ++W+
Sbjct: 290 IKD--KEWVWL 298


>gi|167761978|ref|ZP_02434105.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC
           43183]
 gi|167700210|gb|EDS16789.1| hypothetical protein BACSTE_00323 [Bacteroides stercoris ATCC
           43183]
          Length = 431

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 63/277 (22%), Positives = 109/277 (39%), Gaps = 31/277 (11%)

Query: 7   ESVRFFV--RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  ++  + L+ P   +LVA+SGG+DS+ LL  L +             A   +  LR
Sbjct: 4   EKVAQYINRKQLLQPTDKVLVALSGGADSVALLRLLQA-------SGYDCEAAHCNFHLR 56

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
              +  +  +V  +C + ++    V +       +    +  AARE RY    E  + IN
Sbjct: 57  GAESDRDEAFVRQLCVKQQVPLHTVHFDTARTAEERHISIEMAARELRYGWFEEIRQKIN 116

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I  AH  DD +ET+ +   R     G+         +   N  I RP L   R++I 
Sbjct: 117 ADAIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPKNGHIVRPLLCLERKEII 169

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVN 231
           S+L +    +  D +N  D + R ++R       + +      ++    +          
Sbjct: 170 SYLNRIGQDYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILNTAEHLDGASAIYK 229

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
             +   I +  T     I  + Q+     +TLLF +L
Sbjct: 230 QGIDEGIKRVRTAEGICIERLMQEP--APATLLFEIL 264


>gi|332800081|ref|YP_004461580.1| tRNA(Ile)-lysidine synthase [Tepidanaerobacter sp. Re1]
 gi|332697816|gb|AEE92273.1| tRNA(Ile)-lysidine synthase [Tepidanaerobacter sp. Re1]
          Length = 462

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 102/285 (35%), Gaps = 24/285 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           +E+ R +   +     ++VAVSGG DS+ LL    +  S+     I   A  +DH  R  
Sbjct: 8   LETTRKY-NMIQKKDKVIVAVSGGPDSVCLLHLFMTFKSEL---DISLYAAHLDHMFRGR 63

Query: 65  TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            ++++  +V  +C R  +        V     K       AAR  RY       K   A 
Sbjct: 64  ESEEDACFVKTLCDRWGVPLFSENINVPEYVKKSGLSPEDAARRVRYDFFERVKKQTGAQ 123

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            + T H  +D  ET+ M   R     G+         +  +     RP +   REDI  +
Sbjct: 124 KVATGHNRNDHEETILMNIFRGAGLDGL-------IGIEPVRDCYIRPLIEIPREDIERY 176

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVK----VNN 232
           L  + I +  D +N    + R  +R  +  +        L   +++  ++  +    +  
Sbjct: 177 LKHKEIPFRIDATNLTTDYFRNSIRLELMPLIRKKYCPHLGQSLRRLSEIARRDLSFMEQ 236

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277
                    +      +I   +    +   + + L R++     G
Sbjct: 237 ETEKAHANVIRYEPAKVIIDVKKFSKLHEAIKYRLTRLAVENLTG 281


>gi|256840787|ref|ZP_05546295.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298376612|ref|ZP_06986567.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19]
 gi|256738059|gb|EEU51385.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298266490|gb|EFI08148.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_1_19]
          Length = 438

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 137/343 (39%), Gaps = 32/343 (9%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I ++R ++   R L     +LV +SGG+DS+ LL  L  +            A+  +  L
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E +  +  +  +    L +    + +       +    +  AARE RYA   E  + +
Sbjct: 55  RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGERHLSIEMAARELRYAWFEEMRERL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
                  AH  DD +ETV M   R    +GM       + +   N +I RP L   REDI
Sbjct: 115 GGQATAVAHHRDDNVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++L  +  ++  D +N  D + R  +R  V  + L  +    +     R   + + A  
Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294
           I  Y+    R  + +S D L+I + + F     +        G   L        +    
Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336
           + GK    S  R++ DR  ++LWIT    +   T +L PE+  
Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITSLEKKEKRTFVLDPEKGI 324


>gi|116626117|ref|YP_828273.1| tRNA(Ile)-lysidine synthetase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122251826|sp|Q01QT2|TILS_SOLUE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|116229279|gb|ABJ87988.1| tRNA(Ile)-lysidine synthetase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 440

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/334 (22%), Positives = 128/334 (38%), Gaps = 26/334 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
               A + V VSGG+DS+ LL AL  +      G +K S + VDH LR   ++ +  +V 
Sbjct: 2   FASGARVAVGVSGGADSVCLLHALVEL------GGLKLSVLHVDHGLRGAESRADAEFVG 55

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++ +R+ +   +           +    R AR     E     N   +   HT  DQ ET
Sbjct: 56  ELAARMGLPFCLREVTLGP--GNVEQEGRRARLRFFHEQLAAGNCDRVALGHTRSDQAET 113

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V  R  R       GL+G+           I RP +   R +I  +L +R I W ED +N
Sbjct: 114 VLFRFLRGSGT--AGLAGIRPVTAEG----IVRPLIELERAEIEEYLRERQIPWREDATN 167

Query: 195 TDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNN----AVAMLIPKYLTVHM 246
             + F R R+R      +      AL   +    +            +  L  + LT   
Sbjct: 168 AGEEFARNRIRHGLLPQLAAEWNPALVETLAHTAEFARAEEAYWAGEIDRLSAESLTAGD 227

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIG 305
             ++  ++ +  +   +   L+R +  +  G +    +  +ERV+    +   RG   + 
Sbjct: 228 GCVLIRTESLKALSLAVARRLVRRAIQMAKGDLRGVDFGHVERVVELASAPTGRGRTQVP 287

Query: 306 RVVIDRRANFLWITRAVRNLPTLI--LYPEETTV 337
            + + R   +L +       P  +  L P  T +
Sbjct: 288 GLDVRRSFEWLRLGVPFTRKPYSLKPLVPGTTQI 321


>gi|332184367|gb|AEE26621.1| tRNA(Ile)-lysidine synthetase [Francisella cf. novicida 3523]
          Length = 398

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 15/287 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + P+HI++  SGG DS  LL     +        I   AI ++H L   +     +    
Sbjct: 15  ISPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQT 67

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C R  +     +   +       A A + R A   +  +     L++  H  DDQ ET  
Sbjct: 68  CQRYNLEFISHALDKAPKGESFEAWASKQRMAFFEKIMQQYPKPLLLLGHHQDDQAETFL 127

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +++ R     G+        + +     + RP L   + +I  F    NI++  D SN D
Sbjct: 128 IQAIRGSGLAGLAGMPYYKKLHHGG---VLRPLLNYTKIEIEEFAKLNNITYIYDDSNED 184

Query: 197 DRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
            ++ R  +R  +  I       +   + +  ++  + NN +  L+ + L    +    I 
Sbjct: 185 TKYRRNLIRNEIIPILQQVNPNISQTLSRSANICAQSNNVLHKLLTEKLQSISQGTTLII 244

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
            ++  +D  +   LL +       QI     + ++ + L + +   G
Sbjct: 245 SELTKLDDDIQKSLLHLWFKQNTQQILK--SKQIKDIYLAVNNPTTG 289


>gi|325663698|ref|ZP_08152102.1| hypothetical protein HMPREF0490_02843 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470191|gb|EGC73424.1| hypothetical protein HMPREF0490_02843 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 367

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 60/264 (22%), Positives = 102/264 (38%), Gaps = 18/264 (6%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             VR ++   R       ++  +SGG+DS+ L   LH +  +     +K  A+ V+H +R
Sbjct: 20  ARVRAYIQEHRMFERGETVITGISGGADSVCLFFILHYLQEELG---VKLVAVHVNHGIR 76

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
            E A  + R+V ++C    I   +V         K +  +  A R  R       A+   
Sbjct: 77  GEDADADERFVQNICETAGIPLEIVRCNLELIAKKRKQSMEEAGRNIRREAFERAAQKYG 136

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I  AH  +D  ET+ M   R     GM       T +  +     RP L   R +I 
Sbjct: 137 AAKIALAHHKNDNAETLLMNLVRGTGLNGM-------TGIKPVRDRYVRPLLCLERREIE 189

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            FL Q  I +  D +N  + + R ++R  V       +  +         +   +V   +
Sbjct: 190 GFLEQNGIRYQTDQTNLTEDYTRNKIRNRVIPYMETQINPRAAAHLSEAAEQLRSVQEFL 249

Query: 239 PKYLTVHMRSIIAISQDILNIDST 262
            K L V   + ++   + L I + 
Sbjct: 250 EKQLKVFKENCVSRKGEKLLIRTE 273


>gi|219681486|ref|YP_002467871.1| cell cycle protein MesJ [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|219682042|ref|YP_002468426.1| cell cycle protein MesJ [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471165|ref|ZP_05635164.1| cell cycle protein MesJ [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621775|gb|ACL29931.1| cell cycle protein MesJ [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624329|gb|ACL30484.1| cell cycle protein MesJ [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|311085853|gb|ADP65935.1| cell cycle protein MesJ [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086423|gb|ADP66504.1| cell cycle protein MesJ [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 440

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 135/323 (41%), Gaps = 19/323 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS  LL     +L  +    IK  AI ++H L   +K    +   +C+   I
Sbjct: 15  LVAYSGGLDSTVLLY---KLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V +         L    R  RY +I  H    +  +++T H  +DQ ET ++  +R 
Sbjct: 72  PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKRG 129

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLS M    L+     I RPFL+  + +++++  ++ + W ED SN +  ++R 
Sbjct: 130 SGP--TGLSSMSFETLFGTK-KIVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257
            +R  V  I        +K      + +      L+  +L   +  +I        ++  
Sbjct: 187 FIRNEVIPILEKRWSYFLKNCFRTTI-ICQQETRLLNDFLRERIYKLIKFDDSLNIENFK 245

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314
           NI   +   L+R    +   +I +P Y++++   R M+F +      + +G+  + R   
Sbjct: 246 NIKQEMCTALIRYWLLL--KKIKMPSYKNIQCIYRQMIFSRIDSNPKIILGKHEVRRYKQ 303

Query: 315 FLWITRAVRNLPTLILYPEETTV 337
            L   +   +L   +L+  +  +
Sbjct: 304 SLHFIKTQPSLKNTLLFWHKNNI 326


>gi|311087006|gb|ADP67086.1| cell cycle protein MesJ [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 440

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 135/323 (41%), Gaps = 19/323 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS  LL     +L  +    IK  AI ++H L   +K    +   +C+   I
Sbjct: 15  LVAYSGGLDSTVLLY---KLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V +         L    R  RY +I  H    +  +++T H  +DQ ET ++  +R 
Sbjct: 72  PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKRG 129

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLS M    L+     I RPFL+  + +++++  ++ + W ED SN +  ++R 
Sbjct: 130 SGP--TGLSSMSFETLFGTK-KIVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257
            +R  V  I        +K      + +      L+  +L   +  +I        ++  
Sbjct: 187 FIRNEVIPILEKRWSYFLKNCFRTTI-ICQQETRLLNDFLRERIYKLIKFDDSLNIENFK 245

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314
           NI   +   L+R    +   +I +P Y++++   R M+F +      + +G+  + R   
Sbjct: 246 NIKQEMCTALIRYWILL--KKIKMPSYKNIQCIYRQMIFSRIDSNPKIILGKHEVRRYKQ 303

Query: 315 FLWITRAVRNLPTLILYPEETTV 337
            L   +   +L   +L+  +  +
Sbjct: 304 SLHFIKTQPSLKNTLLFWHKNNI 326


>gi|104783178|ref|YP_609676.1| cell cycle protein MesJ [Pseudomonas entomophila L48]
 gi|95112165|emb|CAK16892.1| putative cell cycle protein MesJ [Pseudomonas entomophila L48]
          Length = 431

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 104/305 (34%), Gaps = 18/305 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L      R        AI V H L+  A     +   VC+ L I 
Sbjct: 19  VAFSGGLDSTVLLHLLADYA--RHHPAPPLRAIHVHHGLQAAADAWPDHCRAVCAALGIE 76

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  + + P   L  AAR ARY    +        ++ T    DDQ ET+  R  R  
Sbjct: 77  LDVIPVQVA-PGASLEQAARNARYGAFEQLL--NPGDVLFTGQHRDDQAETLLFRLLRGA 133

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+    +   +       + RP L   R+ ++++     + W +DPSN D  F R  
Sbjct: 134 GLRGLSAMPVHRVLGRGG---LVRPMLGLSRQRLQAYAEAHGLVWVDDPSNRDTAFARNF 190

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A+ +L     +    +        L +DS  
Sbjct: 191 LRGEVFPLLRSRWPQAEANLARSAEHLGEALGLLDELAASDLACACDNAPLPWLGLDSLS 250

Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  L  +S A          G +  LP  R       +            +    + R  
Sbjct: 251 LESLAALSPARQRNALQFWLGQRSRLPDSRHWAGWNDLRDAAPDASPIWRLADGELHRSH 310

Query: 314 NFLWI 318
             +W 
Sbjct: 311 GRIWW 315


>gi|281425843|ref|ZP_06256756.1| tRNA(Ile)-lysidine synthase [Prevotella oris F0302]
 gi|281400104|gb|EFB30935.1| tRNA(Ile)-lysidine synthase [Prevotella oris F0302]
          Length = 449

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 143/373 (38%), Gaps = 47/373 (12%)

Query: 1   MFLSPIESVRFFVRS--LVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  S    ++ F+    L+ P    LVA+SGG DS+ L   +  +           + I 
Sbjct: 1   MLSSFARRIKLFIDRNLLLKPEGFYLVALSGGCDSVALFRVMIEL-------GYHIAVIH 53

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112
            +  LR E ++ +  +  ++C+  ++    V +   +        +  AARE RY    +
Sbjct: 54  CNFQLRGEESERDEHFCEELCNSQKVPFHRVHFDTREYAELHHISIEMAARELRYQYFEQ 113

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K I A  I+ AH  DD +ETV +   R  +  G+         +   N  + RP L  
Sbjct: 114 LRKDICADAILVAHHQDDTVETVLLNLIRGTSIHGL-------QGIKPKNGHVIRPLLSM 166

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQD 225
            R DI ++L     ++  D SN     +R ++R       R +      ++ L  K   D
Sbjct: 167 TRNDIENYLSSIQQTFITDSSNLIADIKRNKIRLKVLPLLREINPSVSESITLTAKHLND 226

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLP 282
                +NA+   + +   V       +  D L         L+ +L++ +          
Sbjct: 227 AAKVFDNALQESVERVTLVRKADRYVVDIDKLEREISPEQTLYSILKIFSF--------- 277

Query: 283 GYRSME--RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT-VWD 339
               +E     L   +GK+   +    VIDR    L I   +     ++  PE    VWD
Sbjct: 278 SSVQIENMACSLDAPTGKKWLSNTHEAVIDR--GTLVIASLLNASNKVLKVPETGCYVWD 335

Query: 340 GRYQFQNLSDSLI 352
            + +F N++  +I
Sbjct: 336 DKVKF-NITSHVI 347


>gi|15616731|ref|NP_239943.1| cell cycle protein MesJ [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11386907|sp|P57211|TILS_BUCAI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|25325269|pir||E84942 cell cycle protein mesJ [imported] - Buchnera sp. (strain APS)
 gi|10038794|dbj|BAB12829.1| cell cycle protein mesJ [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 440

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 135/323 (41%), Gaps = 19/323 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS  LL     +L  +    IK  AI ++H L   +K    +   +C+   I
Sbjct: 15  LVAYSGGLDSTVLLY---KLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V +         L    R  RY +I  H    +  +++T H  +DQ ET ++  +R 
Sbjct: 72  PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FSDEILLTGHHINDQCETFFLSLKRG 129

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLS M    L+     I RPFL+  + +++++  ++ + W ED SN +  ++R 
Sbjct: 130 SGP--TGLSSMSFETLFGTK-KIVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257
            +R  V  I        +K      + +      L+  +L   +  +I        ++  
Sbjct: 187 FIRNEVIPILEKRWSYFLKNCFRTTI-ICQQETRLLNDFLRERIYKLIKFDDSLNIENFK 245

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314
           NI   +   L+R    +   +I +P Y++++   R M+F +      + +G+  + R   
Sbjct: 246 NIKQAMCTALIRYWLLL--KKIKMPSYKNIQCIYRQMIFSRIDSNPKIILGKHEVRRYKQ 303

Query: 315 FLWITRAVRNLPTLILYPEETTV 337
            L   +   +L   +L+  +  +
Sbjct: 304 SLHFIKTQPSLKNTLLFWHKNNI 326


>gi|120436499|ref|YP_862185.1| PP-loop family protein [Gramella forsetii KT0803]
 gi|117578649|emb|CAL67118.1| PP-loop family protein [Gramella forsetii KT0803]
          Length = 437

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 90/409 (22%), Positives = 156/409 (38%), Gaps = 54/409 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
            + +L+AVSGG DS+ L     S        K+ F+    +  LR + + D+ ++V D+ 
Sbjct: 18  GSKLLLAVSGGVDSVVLAHLCLS-------AKLDFTIAHCNFNLRGDESDDDEKFVVDLA 70

Query: 78  SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             L +     S+         +  +  AARE RY   +E + ++     +TAH  +D LE
Sbjct: 71  DFLEVEVYTESFNTLKFAENNKISVQMAARELRYEWFAELSNSVQFDYTLTAHHANDNLE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +   R    +G+       T +      I RP L   R +I  F  ++N+ W ED S
Sbjct: 131 TFLINLIRGTGPEGL-------TGIKKEKNEIVRPLLPFTRSEIEDFARKKNLKWREDSS 183

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII--- 250
           N  D++ R ++R  +  +        +  F   +  +   +  L+  Y+++    ++   
Sbjct: 184 NASDKYMRNKIRHQIVPVMEELNPQLLDVFSRTQEHLQEGLD-LVEDYISLLYPKLVQKD 242

Query: 251 ----AISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
               AI+ + L        +L+ LL+         +           ++  +SGK     
Sbjct: 243 KFGYAINIEFLKKVPNQKQILYQLLKSFGFTEWNDVYD---------LMDAQSGKMVLSD 293

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW---DGRYQ------FQNLSDSLIQI 354
             R++ DR+   L             L  EE  V     G +          +S S I +
Sbjct: 294 SHRLIKDRKKLLLTEHYEKSGNNEYNLCKEEDLVMIPGMGTFHIHKVEKISKISASCIYV 353

Query: 355 GPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
                RK D P  I     ++     P    GK  L+ F +   KF LP
Sbjct: 354 ---PERKLDFPLTIRK--WKKGDFFYPFGMNGKKKLSDFFKD-EKFSLP 396


>gi|150008036|ref|YP_001302779.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503]
 gi|226695544|sp|A6LBU3|TILS_PARD8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|149936460|gb|ABR43157.1| putative cell-cycle protein [Parabacteroides distasonis ATCC 8503]
          Length = 438

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 137/343 (39%), Gaps = 32/343 (9%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I ++R ++   R L     +LV +SGG+DS+ LL  L  +            A+  +  L
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E +  +  +  +    L +    + +       +    +  AARE RYA   E  + +
Sbjct: 55  RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGERHLSIEMAARELRYAWFEEMRERL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
                  AH  DD +ETV M   R    +GM       + +   N +I RP L   REDI
Sbjct: 115 GGQATAVAHHRDDNVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++L  +  ++  D +N  D + R  +R  V  + L  +    +     R   + + A  
Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294
           I  Y+    R  + +S D L+I + + F     +        G   L        +    
Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336
           + GK    S  R++ DR  ++LWIT    +   T +L PE+  
Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITSLEKKEKRTFVLDPEKGI 324


>gi|328463465|gb|EGF35116.1| tRNA(Ile)-lysidine synthase [Lactobacillus helveticus MTCC 5463]
          Length = 418

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 126/311 (40%), Gaps = 21/311 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V    +LVA S G DSM LL  L ++  +      K  A   +H LR  +++E +++   
Sbjct: 14  VTDKKLLVAASSGPDSMALLDMLRNLQDN---AHFKLMAAHFNHQLRADSEEESKFLKKY 70

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           CS   +   +  W K  +P+ G+ AAAR ARYA +++ AK  NA  ++TAH  DD LE +
Sbjct: 71  CSENHVPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENI 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M    M   +     + + RP L   + ++  +  +  I +  D +N 
Sbjct: 131 LLKFIRSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQ 187

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
            D   R R+R  V  +    L  +        +  +  +  LI           +     
Sbjct: 188 ADETMRNRLRHHVVPL----LKKENPALIRNALFFSQKMDELID---------YVDEKNS 234

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
            +    + L    R+ +               +R + + K  +R   ++G  V+    N+
Sbjct: 235 AMGQLESFLNVAYRIKSEALSQLTEKERIFFWQRTI-WQKYHRRVNENLGNFVVMEYQNY 293

Query: 316 LWITRAVRNLP 326
            ++ +    L 
Sbjct: 294 FYLYKKQNILE 304


>gi|310764931|gb|ADP09881.1| tRNA(Ile)-lysidine synthase [Erwinia sp. Ejp617]
          Length = 433

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/360 (23%), Positives = 142/360 (39%), Gaps = 30/360 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++     +L     +L+A SGG DS  LL  L  +   R    ++  A+ + H L + 
Sbjct: 1   MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQR--PHLQLRAVHIHHGLSQL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A D   +    C R ++   VV  +      G+ AAAR+ARY  + EH   I    ++TA
Sbjct: 59  ADDWAAHCQQQCDRWQVPLVVVRVQVDARDGGIEAAARQARYRALREHL--IAGETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+             +L   RP L   R+ + S+  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGEHRHL---RPLLTQSRQQLESWAQRYR 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           ++W ED SN D R++R  +R  V  +    L  +   F     +              + 
Sbjct: 174 LNWIEDDSNQDARYDRNFLRLQVMPL----LNQRWPHFASAVARSAQLCGEQERLLDELL 229

Query: 246 MRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FL 294
             S+  +  +        +L +       LLR   A   G+  +P   +++R+ L     
Sbjct: 230 SESLDVLVDESGALCFTPLLTMSDARRAALLRRWIARQHGR--MPSRAALQRIWLEVACS 287

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
           ++    C+ IG   + R  + L+       LP L+        W   +Q   L D L Q+
Sbjct: 288 RADAEPCLRIGGNEVRRFRDRLYW------LPQLLPLGASQLAWPAPWQPLTLPDGLGQL 341


>gi|150020112|ref|YP_001305466.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429]
 gi|149792633|gb|ABR30081.1| tRNA(Ile)-lysidine synthetase [Thermosipho melanesiensis BI429]
          Length = 423

 Score =  210 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 122/304 (40%), Gaps = 32/304 (10%)

Query: 2   FLSPIESVRFF--VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
             + +E ++ F  +R       IL+ VSGG DSM LL  L+ V   +    I    ++VD
Sbjct: 4   LKNFLEKIKQFDIIRC---DDKILIGVSGGVDSMTLLYLLNGV---KDILNIDIVCVTVD 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115
           H LR+ +K+E+  V +    L +        V   + + +  +  AAR+ RY       +
Sbjct: 58  HGLRKESKEEINLVKEFSRSLDVPCISGEIDVLGYSKEKKLSIEEAARKLRYEFFYRIKE 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            + A+ I  AH  +D +E V  R  R       G+ GM       +   I RP L   RE
Sbjct: 118 KVGASKIAVAHNLNDLVENVLFRLSRGAGP--FGIYGMK-----PVKGNIIRPLLFFTRE 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVN 231
           DI  F     I +  D SN D ++ R  +R  +       L    +    +F +   +++
Sbjct: 171 DIEDFAGNNKIPYAVDKSNFDTKYTRNFIRHNIIP-KFKELNPSFERAVFRFVENLWELD 229

Query: 232 NAVAMLIP-KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           + +   I  K++ +       + +D       +L   +R       G    P    ++R+
Sbjct: 230 DFMENTINVKHVKIFDGVYFKVPED-----EYVLVEFVRRQTIEQLGIA--PDKEKLDRL 282

Query: 291 MLFL 294
              L
Sbjct: 283 KRSL 286


>gi|161506859|ref|YP_001576813.1| putative cell cycle protein [Lactobacillus helveticus DPC 4571]
 gi|160347848|gb|ABX26522.1| putative cell cycle protein [Lactobacillus helveticus DPC 4571]
          Length = 431

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 129/323 (39%), Gaps = 24/323 (7%)

Query: 8   SVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +  F R     V    +LVA S G DSM LL  L ++  +      K  A   +H LR 
Sbjct: 15  KIADFFRENNINVTDKKLLVAASSGPDSMALLDMLKNLQDN---AHFKLMAAHFNHQLRA 71

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            +++E + +   CS   +   +  W K  +P+ G+ AAAR ARYA +++ AK  NA  ++
Sbjct: 72  DSEEESKLLKKYCSENHVPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLL 131

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DD LE + ++  R    + M    M   +     + + RP L   + ++  +  +
Sbjct: 132 TAHHGDDLLENILLKFIRSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQE 188

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             I +  D +N  D   R R+R  V  +    L  +        +  +  +  LI     
Sbjct: 189 YQIDFVIDSTNQADETMRNRLRHHVVPL----LKKENPALIRNALFFSQKMDELID---- 240

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
                 +      +    + L    R+ +               +R M++ K  +R   +
Sbjct: 241 -----YVDEKNSAMGQLESFLNVAYRIKSEALSQLTEKERIFFWQR-MIWQKYHRRVNEN 294

Query: 304 IGRVVIDRRANFLWITRAVRNLP 326
           +G  V+    N+ ++ +    L 
Sbjct: 295 LGNFVVMEYQNYFYLYKKQNILE 317


>gi|197302373|ref|ZP_03167430.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC
           29176]
 gi|197298552|gb|EDY33095.1| hypothetical protein RUMLAC_01102 [Ruminococcus lactaris ATCC
           29176]
          Length = 498

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 19/249 (7%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M     + V  ++     +     I+  VSGG+DS+ LL  L  +     F   +     
Sbjct: 1   MMDKKRKKVEQYIEQYQMIGRGDRIVTGVSGGADSVCLLFVLCELRKKLGF---EVIVCH 57

Query: 58  VDHCLRETAKD-EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISE 112
           V+H LR  A + +  YV ++C +L +   +    V       +  L  A R  R      
Sbjct: 58  VNHQLRAEAAEQDEAYVKELCRKLDVPCRIFHENVELIAKNGKKSLEEAGRIVRSNAFET 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +   A  I TAH  +D  ETV +   R       GL GMC       N    RP L  
Sbjct: 118 VCRESGANKIATAHHKNDNAETVLLNLARGS-----GLQGMCGIRPVYGNR--IRPLLCL 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL-YLKMKKFQDLRVKVN 231
            R++I  +L +  IS+C D +N +D + R R+R  +  +    +    ++    L ++  
Sbjct: 171 TRKEIEEWLEEEQISYCTDETNEEDEYTRNRIRHKILPVMEQEINRQTVEHINRLSLQAE 230

Query: 232 NAVAMLIPK 240
                L  +
Sbjct: 231 EIWEYLNLQ 239


>gi|291521617|emb|CBK79910.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Coprococcus catus GD/7]
          Length = 476

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 110/275 (40%), Gaps = 27/275 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           ++V VSGG+DS+ LL  L ++    +   ++ +A+ + H LR  A D +  +V+ +C  +
Sbjct: 26  VVVGVSGGADSVCLLSVLKNLQMSMA---LQLTAVHIHHGLRGEAADRDRDFVTALCEDM 82

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +I        +     +       A R+ RY    E  +   A+ I  AH  DD  ETV 
Sbjct: 83  QIPCVCFQADIRAMAKEQHLSEEEAGRKFRYDCFEEVRQERQASKIAVAHHRDDLAETVL 142

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R    KG+    M       +   I RP L   R DI ++L ++ +S+  D +N +
Sbjct: 143 LNLFRGSGLKGLSGIPM-------MRGCIVRPLLGVGRADIEAYLGRQGMSYRNDATNFE 195

Query: 197 DRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             + R R+R          +    +  +        D+   V N  A +    +  +  +
Sbjct: 196 TEYTRNRIRLDILPYVTEHINQAAVSHIAETAAIASDICRYVENQAAAIGKSIVQWNGEA 255

Query: 249 IIAISQ----DILNIDSTLLFYLLRVSAAICGGQI 279
               ++      +  D  +   LLR       GQ+
Sbjct: 256 ECLTAEIDAAAFVGQDIAIQRELLRQVLERTAGQL 290


>gi|227528911|ref|ZP_03958960.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540]
 gi|227351185|gb|EEJ41476.1| tRNA(Ile)-lysidine synthetase [Lactobacillus vaginalis ATCC 49540]
          Length = 462

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 124/306 (40%), Gaps = 15/306 (4%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E  RFF ++      ++VAVS G DSM LL  L  + +       +     V+H 
Sbjct: 7   FKRHLERGRFFDKN----DRVVVAVSTGVDSMVLLALLQELPASLR---PQIIVAHVNHR 59

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR+ +++E +++ D C   R+   V  W     PQ G+  AAR+ RY   ++  K   AT
Sbjct: 60  LRKQSEEEEQFIRDYCEDHRLKLVVHHWPLTEHPQNGIEEAARKMRYCFFAQVMKDEQAT 119

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  +D  ET+ M+  R        L G+ +   +     + RP L   ++ +R +
Sbjct: 120 ILLTAHHQNDLAETMLMKLTRGGQLH--QLIGIEEKRPFASG-TLERPLLNFPKQRLREY 176

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---L 237
            +  ++ W ED +N +    R R R  V  +        +    +   ++  AV +    
Sbjct: 177 AVNNHLKWYEDLTNRELTVSRNRFRHQVIPLLEKENSNFLAALSNYHEQLELAVELENQF 236

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
             + L         +    L         L+ V   +    +       +E+V+  + + 
Sbjct: 237 AQEQLAKLSNKEGHLDIKALCQLPLAKERLVLVK-WLEKNGVLGLKRGFVEQVLSDINNR 295

Query: 298 KRGCVS 303
               + 
Sbjct: 296 HLPQIK 301


>gi|319941154|ref|ZP_08015489.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805321|gb|EFW02131.1| hypothetical protein HMPREF9464_00708 [Sutterella wadsworthensis
           3_1_45B]
          Length = 702

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 126/326 (38%), Gaps = 27/326 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSD 75
           + P  ++VA+SGG DSM LL     + +DR    I +  A+ V H L   A     +   
Sbjct: 195 LNPVRVIVALSGGRDSMALLDVAARIAADRRQQLIAELRAVYVHHGLEREADAWEEHCRR 254

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C +  +    V  +  +   G+ AAAR+ RY  ++++A     ++IMTAH  DD++ET 
Sbjct: 255 ECEKRGVIFEAVRVRVQRSGDGIEAAARDVRYRALAQYALKSGCSIIMTAHHEDDRIETF 314

Query: 136 YMRSQRDYAEKGMGL-----------SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            ++  R    +G+                   +     +++ RP+    R DI  ++  R
Sbjct: 315 LLQWMRGAGLEGLAAFPEVRELAAPSMEDAKAVQARKQVFLLRPWSGVLRRDIERYVKNR 374

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            I + +DPSN   ++ R RVR  +    +  L      F     +    +   +    +V
Sbjct: 375 RIPYVDDPSNNSPKYARNRVRSEI----IPRLEAIRPGFSASAARSVGLIGEALEVLKSV 430

Query: 245 HMRSIIAISQD----------ILNIDSTLLFYLLRVSAAICGGQI-SLPGYRSMERVMLF 293
               + A   +          +L +      + LR   A  G +  S      + R +  
Sbjct: 431 ARADLEACRSETMPHGLSVYRLLELIPARQAWCLRAWIAAEGLRPLSKARLDDLLRQVRE 490

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWIT 319
             S       + R  I R  + + + 
Sbjct: 491 THSDATFSFHVQRKEIRRWGSDIIVR 516


>gi|262381387|ref|ZP_06074525.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296564|gb|EEY84494.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 438

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 137/343 (39%), Gaps = 32/343 (9%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I ++R ++   R L     +LV +SGG+DS+ LL  L  +            A+  +  L
Sbjct: 2   IHTIRLYIEKYRLLSEDRPVLVGLSGGADSVALLGVLVRL-------GYPCIALHCNFHL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E +  +  +  +    L +    + +       +    +  AARE RYA   E  + +
Sbjct: 55  RGEESDRDEAFACEFAESLEVPFHKIDFDTISYAGEKHLSIEMAARELRYAWFEEMRERL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
                  AH  DD +ETV M   R    +GM       + +   N +I RP L   REDI
Sbjct: 115 GGQATAVAHHRDDSVETVLMNLIRGTGIRGM-------SGIRPRNGFIVRPLLCVSREDI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++L  +  ++  D +N  D + R  +R  V  + L  +    +     R   + + A  
Sbjct: 168 LAWLADQGYAYMVDSTNLSDAYTRNFIRLNVLPL-LEEINPSARN-TIARSAEHLSAAET 225

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLF---YLLRVSAAICGGQISLPGYRSMERVMLFL 294
           I  Y+    R  + +S D L+I + + F     +        G   L        +    
Sbjct: 226 IYIYVLEQARKEVVVSDDRLSIGALMRFPAPETILYELLKEYGFTRLVSDDIFAAL--TK 283

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITR-AVRNLPTLILYPEETT 336
           + GK    S  R++ DR  ++LWIT    +   T +L PE+  
Sbjct: 284 EPGKLFYSSTHRLLKDR--DYLWITPLEKKEERTFVLDPEKGI 324


>gi|24373213|ref|NP_717256.1| cell cycle protein MesJ [Shewanella oneidensis MR-1]
 gi|61216652|sp|Q8EGF9|TILS_SHEON RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|24347437|gb|AAN54700.1|AE015610_4 cell cycle protein MesJ [Shewanella oneidensis MR-1]
          Length = 464

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 130/317 (41%), Gaps = 19/317 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + +++A SGG DS  L   L      R    +++  I V H L   A +  ++   
Sbjct: 19  LQAGSKLVLAYSGGVDSEVLAYGLSEYAKQR--PDLRYQLIYVHHGLSPNADNWAKHCQA 76

Query: 76  VCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +   +  +V   +    P+  + A AR+ARY  I  H       +++TAH  DDQLET
Sbjct: 77  RAAIYGLPVTVERVQLILGPRVSVEAEARKARYQAILPHLNPQ--DILLTAHHEDDQLET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           + +  +R    KG+   G    +      +    RP L   RE I +F   R +   ED 
Sbjct: 135 ILLALKRGQGPKGLAAMGQIQPLSLADKGSCLQVRPLLDISREMIETFAQTRQLVHIEDE 194

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN DD+++R  +R  +    L A +  +        ++      ++   ++  +  ++  
Sbjct: 195 SNQDDKYDRNFLRLEIIPR-LKARWPSIATTASRSAQLCAEQQAIVETEVSERLPKLLVK 253

Query: 253 S----QDILNIDSTLL----FYLLRVSAAICGGQISLPGY---RSMERVMLFLKSGKRGC 301
           +    Q +L +         +  + +   I   + SLP Y   + M + ++  K   +  
Sbjct: 254 APVTEQTVLKLSELAAQPIEWQGILLRGFIESQEFSLPSYVQLQQMLQQLIHAKEDAKVH 313

Query: 302 VSIGRVVIDRRANFLWI 318
           + I   V+ R A  L++
Sbjct: 314 IRINDCVLRRFAGMLYL 330


>gi|242371661|ref|ZP_04817235.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           M23864:W1]
 gi|242350610|gb|EES42211.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           M23864:W1]
          Length = 432

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 113/254 (44%), Gaps = 21/254 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLI-ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             AH++VAVS G DSM LL   LH   +       K + + V+H LR  + +E +++ D 
Sbjct: 10  KDAHLVVAVSTGVDSMSLLHSLLHDYHNTYR----KLTCVHVNHGLRHQSVEEEQFLKDY 65

Query: 77  CSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           C    I   V     S   +    +   AR+ RY    E  + I+A  ++TAH  DDQLE
Sbjct: 66  CRAHHIELYVKHLDLSQIVEKGNSIQHEARQRRYDWFGEIIQKIDADALLTAHHLDDQLE 125

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T++ R     + +      +        +  + RP L   +EDI ++     I + ED S
Sbjct: 126 TIFYRLLSGRSTRSALGMSLISNY---KHYRVCRPLLEVSKEDILAYQHSNTIPYFEDDS 182

Query: 194 NTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           N D ++ R  +R+ +         +D H L L++K + D  +++ N  A     +     
Sbjct: 183 NQDTKYVRNDIRQRILPTINRNPFLDTHHL-LRLKDWHDNELQLLNEYAQHFITHFVFEN 241

Query: 247 RSII--AISQDILN 258
           +  +  + S++  N
Sbjct: 242 KDEMGYSFSREAFN 255


>gi|116617526|ref|YP_817897.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096373|gb|ABJ61524.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 430

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 126/297 (42%), Gaps = 27/297 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +   ++   +P  ++VAVSGG DS+ L+ AL          K       V++ LRE +
Sbjct: 3   EKILQTIQQYNWPETVIVAVSGGVDSVVLVHALSK-------TKANLVIAHVNYRLREES 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D+  +V  + ++         W++  P   +  AAR+ RY    E A+  +   I  AH
Sbjct: 56  DDDADFVRQLATQTGAIFEEQVWQHI-PDHAVEKAARQFRYDFFEELAQKYHTNTIAVAH 114

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ETV ++  R    + MG            N  + RPFL   ++++ ++    ++
Sbjct: 115 HADDQAETVLLKMIRGGRLQQMGGMQTK-------NHKVIRPFLSITKQELITYAQDNHL 167

Query: 187 SWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            W +D +N D  +  R  +R  V    L  L    ++       +NN  A ++ +   + 
Sbjct: 168 GWRQDKTNFDVDYTPRNLLRNDV----LPKLTTINQR---AVRHINNMAAQILQQQRLID 220

Query: 246 MRSIIAIS--QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
            ++ I  +  QD   I +  L+ L  +   +   ++       +++++  L +  + 
Sbjct: 221 NQAKIYANDIQDWQKIPT--LWQLPTLKYWLQKNKLFNIKENQLQQMIQLLSNTHKP 275


>gi|87118609|ref|ZP_01074508.1| cell cycle protein [Marinomonas sp. MED121]
 gi|86166243|gb|EAQ67509.1| cell cycle protein [Marinomonas sp. MED121]
          Length = 434

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 117/305 (38%), Gaps = 15/305 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I + +SGG DS+ LL  L            +  AI + H L + A    R+   +C
Sbjct: 23  KEQPIYLGLSGGVDSVALLHLLVEAGLGH-----RVKAIHIHHGLSQNADAWYRFCEALC 77

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            + ++A      +    +  +  AAR ARY + + +        ++ AH   DQ ET+  
Sbjct: 78  QQYQVAFKGHKVELDTQKHSIEEAARIARYDIFASYLNKN--AYLLLAHHAGDQAETLMF 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G GL+GM          ++ RP L   + ++  ++ Q  ++W ED SN D+
Sbjct: 136 RLLRGTG--GKGLAGMPAKRELGAG-FLYRPLLSFDKTNLIQYVKQNGLTWVEDESNQDE 192

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN---NAVAMLIPKYLTVHMRSIIAISQ 254
            F R  +R  +             + +    ++      +A L    L+       ++  
Sbjct: 193 AFSRNHIRHQIIPKLQAFEPQAECRIEQAAKRLAFDYQMLANLSRDKLSAWQAQDTSLKL 252

Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           D +  +D     + LR    +    ++     ++     F + GK+ C       + R  
Sbjct: 253 DAIAALDQEQRVFWLRQYLELFSISLTQAQVLAVNE-SFFTEQGKQPCFEHKLARLMRFQ 311

Query: 314 NFLWI 318
           N L++
Sbjct: 312 NRLYV 316


>gi|299140703|ref|ZP_07033841.1| tRNA(Ile)-lysidine synthase [Prevotella oris C735]
 gi|298577669|gb|EFI49537.1| tRNA(Ile)-lysidine synthase [Prevotella oris C735]
          Length = 439

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 82/356 (23%), Positives = 142/356 (39%), Gaps = 45/356 (12%)

Query: 16  LVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYV 73
           L+ P    LVA+SGG DS+ LL  +  +           + I  +  LR E ++ + R+ 
Sbjct: 8   LLKPGGFYLVALSGGCDSVALLRVMIEL-------GYHIAVIHCNFQLRGEESERDERFC 60

Query: 74  SDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++C+  ++    V +   +        +  AARE RY    +  K I A  I+ AH  D
Sbjct: 61  EELCNSQKVPFHRVHFDTREYAELHHISIEMAARELRYQYFEQLRKDICADAILVAHHQD 120

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ETV +   R     G G+ G+    +   N  + RP L   R DI ++L     ++ 
Sbjct: 121 DTVETVLLNLIR-----GTGIHGLQG--IKPKNGHVIRPLLSMTRNDIENYLSSIQQTFI 173

Query: 190 EDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            D SN     +R ++R       R +      ++ L  K   D+    +NA+   + +  
Sbjct: 174 TDSSNLIADIKRNKIRLKVLPLLREINPSVSESITLTAKHLNDVAKVFDNALQESVERVT 233

Query: 243 TVHMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSG 297
            V       +  D L         L+ +L+  +              +E +   L   +G
Sbjct: 234 LVRKADRYVVDIDKLEREISPEQTLYSILKNFSF---------SSVQIESIACSLDAPTG 284

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT-VWDGRYQFQNLSDSLI 352
           K+   +    VIDR    L I   +     ++  PE    VWD + +F N++  +I
Sbjct: 285 KKWLSNTHEAVIDR--GTLVIAPLLDASNKVLKVPETGCYVWDDKVKF-NITSHVI 337


>gi|317497137|ref|ZP_07955463.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895547|gb|EFV17703.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 425

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 109/266 (40%), Gaps = 18/266 (6%)

Query: 50  KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREA 105
            +  +A+ ++H +R  A D+ ++V D+C +L I   +          + +  L  A R+A
Sbjct: 2   NLTITAVHINHMIRREAVDDQKFVQDLCGQLSIPCKIFEIDVKQIAKREKMSLEEAGRKA 61

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY   ++  K  NA  I  AH  +DQ ET   R  R     G G          + +  +
Sbjct: 62  RYDAFAKTMKKYNADKIAIAHHQNDQAETFLYRVVRGTGIYGAGAM-------REKDGNL 114

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYL 218
            RP L  ++E+I  +L +   +W ED SN DD F R ++R  V        +  +  +  
Sbjct: 115 IRPLLCVKKEEIVKYLKEAGQAWVEDASNQDDAFARNQIRNQVIPRLEMINEQAVEHIGW 174

Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
             +  +++   + + +     +      +        +L  +  +   +L+       G+
Sbjct: 175 LCEDIKEVTTYLTDQIEESFLRCTKPIGQGFEINCDQLLLENHWIQKQVLKKVLEETAGK 234

Query: 279 ISLPGYRSMERVMLFLKSGKRGCVSI 304
                 R +E ++  +++G    +S+
Sbjct: 235 KKDLERRHIEDLLTLVENGTGKRISL 260


>gi|168015333|ref|XP_001760205.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688585|gb|EDQ74961.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 569

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 127/313 (40%), Gaps = 30/313 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKI---KFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +AVSGG DSM L +             +   + + I VDH LR  +  E   V      
Sbjct: 1   AIAVSGGPDSMALCLVAKEWWKGFRESGVFAERPTGIVVDHGLRPESAAEALQVQRWVLD 60

Query: 80  LRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           L     V+   W N +P +G L  AAR ARY+L+ +         ++T H  DDQ E   
Sbjct: 61  LGFECHVLKCDWLNGRPDSGHLQEAARNARYSLMEQTCWKHGIGTLLTGHHADDQAELFM 120

Query: 137 MRSQRDYAEKGMGLSGMCDTILY---------DLNLWISRPFLRCRREDIRSFLLQRNIS 187
           MR  R      +GL+GM     +            L + RP L+  ++D+ +   +    
Sbjct: 121 MRLARSSGI--IGLAGMASRSYFFSRRPVSQDQTGLLLVRPLLQFSKQDLYTVCKKAGQE 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI----DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           W EDP+N + +F R R+R+ + D         ++  +   +  R  ++     L+ K +T
Sbjct: 179 WIEDPTNFNHKFARNRIRQVLADPLYDDARRQIHPLIAACRQTRAMLDRERDGLLAKIVT 238

Query: 244 VHMR-SIIAISQDIL---NIDSTLLFY----LLRVSAAICGGQISLPGYRSMERVMLFLK 295
           +      I+I  D+L   NI   +L      +L+  +     +   P  ++++  M  L+
Sbjct: 239 ISKDFGYISIDVDLLASSNISDAVLGRVVVAVLQARSQFVAQREKPPRGKALKIFMDKLR 298

Query: 296 SGK-RGCVSIGRV 307
                   ++   
Sbjct: 299 QPSFNEAFTLAGC 311


>gi|296131746|ref|YP_003638993.1| tRNA(Ile)-lysidine synthetase [Thermincola sp. JR]
 gi|296030324|gb|ADG81092.1| tRNA(Ile)-lysidine synthetase [Thermincola potens JR]
          Length = 471

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 116/308 (37%), Gaps = 26/308 (8%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V+  V   + L     ++V VSGG DS+ L   L  +  +    ++      ++H  R
Sbjct: 3   EKVKATVIKYKMLEPGDKVVVGVSGGPDSVALAHILTRLAKE---FRLTIHIGHLNHMFR 59

Query: 64  E-TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTIN 118
              A+ +   V+ +  +L +  +V         S+ +    A AR  RYA   + A  + 
Sbjct: 60  GKEAELDAASVARLAEKLGLPCTVERIDVPAYLSEHRVSAQAGARYIRYAFFEKLADEVG 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I T H  DDQ ETV M   R       GL+G+             RP +   R++I 
Sbjct: 120 ANRIATGHHADDQAETVLMNFLRGSGV--SGLTGIPPVR----QGKYIRPLIEVSRQEIE 173

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAV 234
           ++    ++    D SN  + + R RVR     F++      +   + +F ++    N  +
Sbjct: 174 NYCRYFDLPVRFDASNAKNIYLRNRVRNQLIPFLQKEFNPKIVQTIARFSEIARDDNEFI 233

Query: 235 AMLIPKY-----LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
                K      +      I             +   +L  +     G      Y ++E 
Sbjct: 234 CREAEKAWQLLGVEERTEEIRFELDRFWEWPRAVQRRILIKAWEAVTGSARDIMYTNIEN 293

Query: 290 VMLFLKSG 297
           ++ FLK+G
Sbjct: 294 LLEFLKTG 301


>gi|296111610|ref|YP_003621992.1| cell cycle protein MesJ [Leuconostoc kimchii IMSNU 11154]
 gi|295833142|gb|ADG41023.1| cell cycle protein MesJ [Leuconostoc kimchii IMSNU 11154]
          Length = 435

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 120/300 (40%), Gaps = 20/300 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I  +   ++   +   ++VAVSGG DS+ LL AL      +     K     V++ LRE 
Sbjct: 2   INKIEKQLKKYKWGDTVIVAVSGGVDSVVLLHAL-----RQQLPTAKLVIAHVNYHLREE 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +  +  +V  +  + +    + +W +  P   + + AR+ RY    + A   +   I+ A
Sbjct: 57  SDADEVFVRRLAEKYQAVFEMTTWSDI-PSNSVESKARQLRYLFFEKLAYQYHTETIVVA 115

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ ETV ++  R        L+GM        N  I+RPFL   ++++R +     
Sbjct: 116 HHADDQAETVLLKLVRGGQV--SQLAGMDS-----QNSHITRPFLCITKQELRHYAQDNE 168

Query: 186 ISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           ++W +D +N D  +  R   R  +           +    D   ++ +  A++  +    
Sbjct: 169 LTWRDDKTNADPLYTPRNFFRNQIIPELKTINPQAVAHINDFAKQIQDQNALITAQTDIY 228

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
             +    I     +I    L   ++      G  I       + ++   L++ ++   ++
Sbjct: 229 VQQ----IENHWQSIPPIWLEQTIKRFIQKKG--IYQFKQVQISQIRHLLENKQKPIGTV 282


>gi|308272159|emb|CBX28766.1| hypothetical protein N47_L13640 [uncultured Desulfobacterium sp.]
          Length = 490

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 133/341 (39%), Gaps = 22/341 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  ++        +     ILV VSGG+DS+ L+  L+ +        +K     ++H 
Sbjct: 12  FMQKVKKTVAEYNMIQNKDCILVGVSGGADSVTLIHVLYEIAP---IFSLKLGIAHLNHS 68

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKT 116
           LR+  + D+  +V+ +  +L +   +     +K +T     +  A R  RYA   + A  
Sbjct: 69  LRKNESDDDAGFVNALSKKLNLPCFIEKKDVTKYKTENKLSVEEAGRRMRYAFFEDIAIK 128

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRRE 175
                I   HT +D  E V M   R      +G+SG+         NL I RP ++  R 
Sbjct: 129 EGFNKIALGHTANDNAELVLMYLLRGSGP--LGISGIPPLRGGLKNNLLIIRPLIKTLRP 186

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLH---ALYLKMKKFQDLRVKVN 231
           +I  ++  + +S   D SN D+++ R ++R   +  ++ +    +   + +   +    N
Sbjct: 187 EIEGYISCKGLSHIIDKSNMDEKYLRNKIRHNLIPHLNKNYNSKIVETLNRLASIVRSEN 246

Query: 232 NAVAMLIPKYLTV-----HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
             +   +   +           I+    +I  +       + R++     G +       
Sbjct: 247 EWMEEELAADIKKTIIKEEPDKIVCSVSEIKALHPAARNRISRIAILKVKGDLRRISLSH 306

Query: 287 MERVMLFLKSG-KRGCVSI-GRVVIDRRANFLWITRAVRNL 325
           +E +   L+S      + +  R+ + R    L I++    L
Sbjct: 307 IELMSAQLESDSDNWSLDLPDRIRVTRTGESLVISKGKSAL 347


>gi|170727604|ref|YP_001761630.1| tRNA(Ile)-lysidine synthetase [Shewanella woodyi ATCC 51908]
 gi|259533759|sp|B1KNS7|TILS_SHEWM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|169812951|gb|ACA87535.1| tRNA(Ile)-lysidine synthetase [Shewanella woodyi ATCC 51908]
          Length = 470

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 132/323 (40%), Gaps = 19/323 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            A +++A SGG DS  L   L   L  +S  + ++  + V H L   A   V +      
Sbjct: 24  GAKLVLAYSGGVDSEVLAQGLS--LYAKSHPEFRYLLVHVHHGLSRNADAWVTHCQKQAL 81

Query: 79  RLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             ++   VV  +    P+  + A AR ARY  I+    +  A +++TAH  DDQLETV +
Sbjct: 82  DYQLPIEVVQVQVKTGPRLSIEAEARRARYKAITSLMDS--ADVLLTAHHLDDQLETVLL 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             +R    KG  LS M    ++D +  + RP L   RE I +     ++   ED SNTDD
Sbjct: 140 ALKRGLGPKG--LSAMGALQVFDGDKQLLRPLLNVSREQIEAKAASLSLPHIEDESNTDD 197

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250
           +++R  +R  +    L + +  +         +      +I   ++  + + I       
Sbjct: 198 KYDRNFLRLQIIP-KLKSRWSAIATTASRSAALCAQQQAVIDDEVSARLPNFIELVPYGE 256

Query: 251 --AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGCVSIGR 306
             A++ D+L+  +     LL        G   +   +  + +      K      V I  
Sbjct: 257 GTALNLDLLSHQTPNWQALLLRGYIESSGFAPVSQIQLEQLLSQLLTAKPDANLEVRIAD 316

Query: 307 VVIDRRANFLWITRAVRNLPTLI 329
           +++ R     +++    + P  +
Sbjct: 317 MLVRRFREKAYLSSYRPHKPKSL 339


>gi|255030074|ref|ZP_05302025.1| hypothetical protein LmonL_15194 [Listeria monocytogenes LO28]
          Length = 275

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/262 (25%), Positives = 104/262 (39%), Gaps = 17/262 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A  E R V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHLNHQLRENAAKEQRVVETFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   +            Q GL   AR  RY    +     N   ++ AH  DDQ+E
Sbjct: 77  ERQGIPFYIEEVDIKSRAQSLQKGLEETARIVRYDFFEKVMAEKNINKLVLAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I  +  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKRELKGGQAI-RPFLPITKAEIIDYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
           NT   + R R R  +      +  A+Y   ++F +   +    +    + L+ K L  + 
Sbjct: 194 NTSQEYTRNRYRAQLLPFLKQENPAVYSHFERFSEETSEDFQFLEALASDLLKKNLIKNG 253

Query: 247 RSIIAISQDILNIDSTLLFYLL 268
           +    +     N  + L    +
Sbjct: 254 KQTTLLLSSFKNEANPLQRRAI 275


>gi|311087577|gb|ADP67656.1| cell cycle protein MesJ [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 398

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 134/323 (41%), Gaps = 19/323 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA SGG DS  LL     +L  +    IK  AI ++H L   +K    +   +C+   I
Sbjct: 15  LVAYSGGLDSTVLLY---KLLEIKKKYYIKIRAIHINHNLTLLSKKWSEHCKKICNINHI 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V +         L    R  RY +I  H       +++T H  +DQ ET ++  +R 
Sbjct: 72  PLIVENINIKNKTNNLEEKLRIKRYNIIYNHL--FYDEILLTGHHINDQCETFFLSLKRG 129

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLS M    L+     I RPFL+  + +++++  ++ + W ED SN +  ++R 
Sbjct: 130 SGP--TGLSSMSFETLFGTK-KIVRPFLKKTKIELQTWAKKKKLHWIEDFSNLNIDYDRN 186

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-----QDIL 257
            +R  V  I        +K      + +      L+  +L   +  +I        ++  
Sbjct: 187 FIRNEVIPILEKRWSYFLKNCFRTTI-ICQQETRLLNDFLRERIYKLIKFDDSLNIENFK 245

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGRVVIDRRAN 314
           NI   +   L+R    +   +I +P Y++++   R M+F +      + +G+  + R   
Sbjct: 246 NIKQEMCTALIRYWLLL--KKIKMPSYKNIQCIYRQMIFSRIDSNPKIILGKHEVRRYKQ 303

Query: 315 FLWITRAVRNLPTLILYPEETTV 337
            L   +   +L   +L+  +  +
Sbjct: 304 SLHFIKTQPSLKNTLLFWHKNNI 326


>gi|297582401|ref|YP_003698181.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10]
 gi|297140858|gb|ADH97615.1| tRNA(Ile)-lysidine synthetase [Bacillus selenitireducens MLS10]
          Length = 475

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 123/309 (39%), Gaps = 25/309 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R +    H+LVAVSGG DSM LL  LH     R+   I  SA+   H LR E+A  +   
Sbjct: 13  RLIQAGDHLLVAVSGGVDSMVLLHLLHE---RRTRLSITLSAVHAHHHLRRESADRDAEL 69

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V+  C  L I   +V     + +      + A AR+ RY           A  ++TAH  
Sbjct: 70  VASFCRELAIPFHLVHLSVEEERKLRNGSVQAVARDLRYEAFRHVMTETGANRLVTAHHG 129

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ+ETV ++  R+ A+ G G+  +           + RP L   +  +  +     I +
Sbjct: 130 DDQIETVLLQLLRNTAQGGSGMRALRPI----EGGTLIRPLLDTEKASLYRYAKDSGIPF 185

Query: 189 CEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-- 243
            ED SN    + R R+R+ +  +   +   ++ ++ ++ + R   ++ +  L  + L   
Sbjct: 186 REDESNDSRHYRRNRIRQDILPVLKEEHPGIHRQIGRYTEERQTESDYLDHLADEMLQEP 245

Query: 244 -----VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS---LPGYRSMERVMLFLK 295
                +    +         + S L    + +        +        R++E+ +  + 
Sbjct: 246 SFSLMMKESGLQFSRPAFQRLPSALQKRAVHLLLTYLSEHLRIRVAHNRRNLEQAVAVIC 305

Query: 296 SGKRGCVSI 304
             K    + 
Sbjct: 306 GEKPNAAAF 314


>gi|147676532|ref|YP_001210747.1| ATPase [Pelotomaculum thermopropionicum SI]
 gi|146272629|dbj|BAF58378.1| predicted ATPase [Pelotomaculum thermopropionicum SI]
          Length = 473

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 127/315 (40%), Gaps = 26/315 (8%)

Query: 3   LSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +S +  VR  +   R +     +LVAVSGG DS+ LL AL+ +  +     I      ++
Sbjct: 1   MSLLHKVRENICRHRMVERGCKVLVAVSGGPDSVALLHALYLLKEELE---ISLHVAHLN 57

Query: 60  HCLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHA 114
           H  R   ++ E  +V+D+  R  +  +V    V     +      AAARE R+   SE A
Sbjct: 58  HMFRGAESEAEALFVADMARRYGLPATVEARDVPAYQKQSGLSAQAAAREVRFRFFSEAA 117

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
               A+ +  AH  DDQ ET+ +   R       GL G+          +  RP L  RR
Sbjct: 118 GKAGASRVALAHHADDQAETILINFLRGAGI--TGLKGISPVRE----GFYIRPLLTVRR 171

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKV 230
            +I  +  +  + +C D SN    + R RVR  +  +       AL   + +  ++  + 
Sbjct: 172 AEIERYCKEMKLPYCRDSSNLKAVYTRNRVRLELIPLLEKEYNPALVPTLLRLGEICREE 231

Query: 231 NNAVAM----LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYR 285
           +  +A          L   +   + +  D    +   +   +++ +     G      ++
Sbjct: 232 DAYLAEQAVKAFQAVLREKVSGRVVLRLDAFKQMPPAIRRRVVQQAWRSLTGAEENLAFQ 291

Query: 286 SMERVMLFLKSGKRG 300
            +E V+  ++ G  G
Sbjct: 292 HVEAVLDLIQKGGTG 306


>gi|225016525|ref|ZP_03705717.1| hypothetical protein CLOSTMETH_00431 [Clostridium methylpentosum
           DSM 5476]
 gi|224950754|gb|EEG31963.1| hypothetical protein CLOSTMETH_00431 [Clostridium methylpentosum
           DSM 5476]
          Length = 445

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 131/353 (37%), Gaps = 35/353 (9%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63
           + S++  V SL      I+V VSGG+DSM LL AL           +   A  ++HCLR 
Sbjct: 1   MNSIQIHVSSLFSEGDRIVVGVSGGADSMALLHALRHCGK-----PLHLVAAHLNHCLRG 55

Query: 64  ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           E ++ + ++V   C    I   +    V+    K    L    RE RYA   E       
Sbjct: 56  EESERDEQFVVGYCKEHGIPCEIRQIDVAAAAKKSGQSLELCGRELRYAFFEELCGEQG- 114

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I TAHT  D+ ET+     R  +  G+         +      I RP     R +I +
Sbjct: 115 -FIATAHTLSDRAETLLFNLARGSSPAGL-------CSIPAQRGRIVRPLSPFTRGEIEA 166

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +  +  I +  D SN  D + R R+RR      + AL     +F+     + +++A    
Sbjct: 167 YCKEYRIPYQIDSSNLSDDYARNRIRRH----AVPALVSVNCRFERHAAALMDSLAQDQN 222

Query: 240 KYLTVHMRSIIAISQD-------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
                   +     +D       +  +   +   +LR+       QI +     + R++ 
Sbjct: 223 YLEQQASAAYERAERDGRLDARQVARLHPAIQGRVLRLFLE--SHQIEV-SAALVARLVQ 279

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD-GRYQF 344
             + G       G  ++  R  FL I   +   P      + +   D G ++ 
Sbjct: 280 LCRDGAGRQSVPGNRLVQLRKGFLEIVVPLDRPPYFEYLWDHSEQCDLGGFRI 332


>gi|188577760|ref|YP_001914689.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188522212|gb|ACD60157.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 434

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 134/355 (37%), Gaps = 19/355 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    
Sbjct: 12  IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68

Query: 77  CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C  L++   +V  +  +    GL AAAR AR+   +          +  AH  DDQ ET 
Sbjct: 69  CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAFAHTLAA--GEWLTLAHHRDDQAETF 126

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +R+ R    +G+             +  + RP L   R D+ ++ L + + W EDPSN 
Sbjct: 127 LLRALRASGPEGLAAM---RPQRPFADGTLWRPLLAHSRADLLAYALAQEVRWIEDPSNA 183

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAI 252
           D R +R  +R  V  +        +           +A A+L+ + + +      +  A+
Sbjct: 184 DPRHDRNFLRSQVLPLLQQRWPQAVDALARSAQLSADASALLLQQDMALLPSVCTASGAL 243

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVID 310
               L          L  +         LP     ++ER +    + ++ C +  +V + 
Sbjct: 244 DLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVR 303

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
           R    L++ R     PT     +    WDG    Q    + +++   +  +   P
Sbjct: 304 RWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQLPDGAQLRLLGATGLRFAQP 353


>gi|227432630|ref|ZP_03914606.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351600|gb|EEJ41850.1| tRNA(Ile)-lysidine synthetase, MesJ [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 435

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 124/297 (41%), Gaps = 27/297 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +   ++   +P  ++VAVSGG DS+ L+ AL          K       V++  RE +
Sbjct: 8   EKILQTIKQYNWPETVIVAVSGGVDSVVLVHALSK-------TKANLVIAHVNYRFREES 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D+  +V  + ++         W++  P   +  AAR+ RY    E A+  +   I  AH
Sbjct: 61  DDDADFVRQLATQTGAIFEEQVWQHI-PDHAVEKAARQFRYDFFEELAQKYHTNTIAVAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ETV ++  R    + MG            N  + RPFL   ++++ ++     +
Sbjct: 120 HADDQAETVLLKMIRGGRLQQMGGMQTK-------NHKVIRPFLSITKQELITYAQDNQL 172

Query: 187 SWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            W +D +N D  +  R  +R  V    L  L    ++       +NN  A ++ +   + 
Sbjct: 173 GWRQDKTNFDVDYTPRNLLRNDV----LPKLTTINQR---AVRHINNMAAQILQQQRLID 225

Query: 246 MRSIIAIS--QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
            ++ I  +  QD   I +  L+ L  +   +   ++       +++++  L +  + 
Sbjct: 226 NQAKIYANDIQDWQKIPT--LWQLPTLKYWLQKNKLFNIKENQLQQMIQLLSNTHKP 280


>gi|146299894|ref|YP_001194485.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
 gi|146154312|gb|ABQ05166.1| tRNA(Ile)-lysidine synthetase [Flavobacterium johnsoniae UW101]
          Length = 436

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 116/315 (36%), Gaps = 33/315 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
            +    + +AVSGG DSM LL     +         + + +  +  LR   +  +  ++ 
Sbjct: 15  FLKQKKLFLAVSGGLDSMVLLHLFKQL-------NYEITVLHCNFQLRGLESFGDQEFIQ 67

Query: 75  DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + C +  I      +         +  +  AARE RY+   E  +  +   ++TAH  DD
Sbjct: 68  NYCDKNNIKIFTTQFDTQAFAEDYKLSIQVAARELRYSWFYELLEEKHFDYLLTAHHADD 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET  +   R     G+       T + + N  I RP L   RE+I  +  + NI W E
Sbjct: 128 NLETFIINLTRGTGLDGL-------TGIPEQNDKIIRPLLPFSREEILKYAQENNIEWRE 180

Query: 191 DPSNTDDRFERVRVRRFVRDI------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           D SN   ++ R ++R  +  +      +    + K + F     ++    +++I + +  
Sbjct: 181 DSSNASTKYVRNKIRHDLVPVLKQINPNFLDAFQKTQSFLQESKEMVEDASIVIYQQVAK 240

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                I    + L        YL +             G+ + + +   ++      V  
Sbjct: 241 EAGDDIHFDLNQLKKLPNYKSYLYQWLNEF--------GFSAWKDIYDLVEGQSGKQVFS 292

Query: 305 GRVVIDRRANFLWIT 319
               + +    L +T
Sbjct: 293 DEFRLLKNREILILT 307


>gi|323465808|gb|ADX69495.1| tRNA(Ile)-lysidine synthase (TRNA(Ile)-lysidinesynthetase)
           [Lactobacillus helveticus H10]
          Length = 418

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 70/311 (22%), Positives = 126/311 (40%), Gaps = 21/311 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V    +LVA S G DSM LL  L ++  +      K  A   +H LR  +++E + +   
Sbjct: 14  VTDKKLLVAASSGPDSMALLDMLKNLQDN---AHFKLMAAHFNHQLRADSEEESKLLKKY 70

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           CS   +   +  W K  +P+ G+ AAAR ARYA +++ AK  NA  ++TAH  DD LE +
Sbjct: 71  CSENHVPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLLTAHHGDDLLENI 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M    M   +     + + RP L   + ++  +  +  I +  D +N 
Sbjct: 131 LLKFIRSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQEYQIDFVIDSTNQ 187

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
            D   R R+R  V  +    L  +        +  +  +  LI           +     
Sbjct: 188 ADETMRNRLRHHVVPL----LKKENPALIRNALFFSQKMDELID---------YVDEKNS 234

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
            +    + L    R+ +               +R M++ K  +R   ++G  V+    N+
Sbjct: 235 AMGQLESFLNVAYRIKSEALSQLTEKERIFFWQR-MIWQKYHRRVNENLGNFVVMEYQNY 293

Query: 316 LWITRAVRNLP 326
            ++ +    L 
Sbjct: 294 FYLYKKQNILE 304


>gi|259907561|ref|YP_002647917.1| tRNA(Ile)-lysidine synthase [Erwinia pyrifoliae Ep1/96]
 gi|224963183|emb|CAX54667.1| tRNA(Ile)-lysidine synthase [Erwinia pyrifoliae Ep1/96]
 gi|283477401|emb|CAY73317.1| cell cycle protein [Erwinia pyrifoliae DSM 12163]
          Length = 433

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 83/360 (23%), Positives = 143/360 (39%), Gaps = 30/360 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++     +L     +L+A SGG DS  LL  L  +   R    ++  A+ + H L + 
Sbjct: 1   MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQR--PHLQLRAVHIHHGLSQL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A D   +    C R ++   VV  +      G+ AAAR+ARY  + EH   I    ++TA
Sbjct: 59  ADDWAAHCQQQCDRWQVPLVVVRVQVDARDGGIEAAARQARYRALREHL--IAGETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+             +L   RP L   R+ + S+  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQEQRQGEHRHL---RPLLTQSRQQLESWAQRYR 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           ++W ED SN D R++R  +R  V  +    L  +   F     +              + 
Sbjct: 174 LNWIEDDSNQDARYDRNFLRLQVMPL----LNQRWPHFASAVARSAQLCGEQERLLDELL 229

Query: 246 MRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--- 294
             S+ A+  +        +L +       LLR   A   G+  +P   +++R+ L +   
Sbjct: 230 SESLDALVDESGALCFTPLLTMSDARRSALLRRWIARQHGR--MPSRAALQRIWLEVASS 287

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
           ++     + IG   + R  + L+       LP L+        W   +Q   L D L Q+
Sbjct: 288 RADAEPRLRIGGNEVRRFRDRLYW------LPQLLPLGASQLAWPAPWQPLTLPDGLGQL 341


>gi|262281027|ref|ZP_06058810.1| tRNA(Ile)-lysidine synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257927|gb|EEY76662.1| tRNA(Ile)-lysidine synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 467

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 137/334 (41%), Gaps = 30/334 (8%)

Query: 10  RFFVRSLVYPAHI-------LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           R F  +++  A +       L+  SGG DSM LL  +  +   +        AI +DH L
Sbjct: 14  RKFRHNVLKQAQLFSENSSFLIGCSGGMDSMLLLHLISQIFPQK------IRAIYIDHQL 67

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +  + +  + V+   +RL I + +   + +     L A AR+ARY    +H +     ++
Sbjct: 68  QSQSAEWGKLVAKQATRLDIPYIIQKVQVAD--GNLEAQARQARYQAYRQHLQPN--EIL 123

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + AH   DQ ETV +R        G+       +I Y +++ I RPFL   RE I  +  
Sbjct: 124 VLAHHQQDQAETVMLRLLSGAGVDGLAAM---QSIDYRVDMTIWRPFLDLTREQIADWTT 180

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           Q  I +  DP+N D  ++R   R  +    L   + KM++       +    + ++ + L
Sbjct: 181 QLEIEYVNDPTNYDIHYDRAWSREELWP-FLQKRFPKMQQALSRTSYLMQDASEILEEVL 239

Query: 243 TVHMRSIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLK 295
            V ++            +L++ +     LL  S  + G     P +  +ER+   ++  K
Sbjct: 240 IVDLKHCGTAECLDLTKLLDLSAARQRQLL--SVWMKGNGQYRPAFEMVERLKNEVIDSK 297

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLI 329
           S  +  +   +    R  N L+       L   +
Sbjct: 298 SDAQAALHWNQFYYVRYQNHLYRLSKQAFLAETL 331


>gi|124006425|ref|ZP_01691259.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla
           marina ATCC 23134]
 gi|123988082|gb|EAY27753.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Microscilla
           marina ATCC 23134]
          Length = 450

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 122/318 (38%), Gaps = 37/318 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78
            +IL+AVSGG DS+ L      + S       + +    +  LR   ++++  +V  +  
Sbjct: 19  DNILLAVSGGIDSVVLTDLFAQIKS-----HGQVAIAHCNFQLRGVASEEDEEFVKQLAQ 73

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I   V  +         +  +   AR  RYA   +         + TAH  +D +ET
Sbjct: 74  HYGIPCFVTRFDTYTLAQAQKGSIQMIARNLRYAWFEQLRTKEGYHYLATAHHQNDMVET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R       GL G+           I RP L   RE+I ++  ++ + WCED SN
Sbjct: 134 VLLNLVRGTGI--AGLHGIKVK-----QGHIIRPMLFASREEIEAYAQEKGLKWCEDASN 186

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-----VHMRSI 249
            D+++ R R+R  V  + L  +   ++K  +  V+  +AV       +      +   + 
Sbjct: 187 QDNKYYRNRLRNEVIPV-LKTMNPNLEKTLEQSVEKISAVERFFEAEVQHIETTLMTSTT 245

Query: 250 IAISQDILNIDS-----TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
             +  D+  ++       +L+++L+              Y   + ++  +          
Sbjct: 246 ETVFLDLKKLEPIDEKLIILYHILKKFGF---------SYIQTQDILAGITGESGKQFLS 296

Query: 305 GRVVIDRRANFLWITRAV 322
              V+ +  N L IT A 
Sbjct: 297 PTYVLVKDRNKLVITPAR 314


>gi|253572641|ref|ZP_04850042.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6]
 gi|251837773|gb|EES65863.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 1_1_6]
          Length = 426

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 106/266 (39%), Gaps = 26/266 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  IE    F         +LVA+SGG+DS+ LL  LH+          +  A   +  L
Sbjct: 7   IRYIEKEHLFS----PDDKLLVALSGGADSVALLRVLHT-------AGYQCEAAHCNFHL 55

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E +  + ++V  +C +  I    + +      ++ +  +  AARE RY    +  +  
Sbjct: 56  RGEESNRDEQFVRQLCQKYGIRLHTIDFNTTQYATEKRISIEMAARELRYNWFEKIKEEC 115

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A +I  AH  DD +ET+ +   R     G+         +   N  I RP L   RE+I
Sbjct: 116 GAHVIAVAHHQDDSVETMLLNLIRGTGITGL-------LGIRPRNGAIVRPLLCINREEI 168

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +L Q    +  D +N +D + R ++R  +  +             +  + +N+   + 
Sbjct: 169 IRYLQQIGQDFVTDSTNLEDEYTRNKIRLNLLPLMQEINPSVKNSLIETSIHLNDVATIY 228

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTL 263
                 +       I+ + + ID+ L
Sbjct: 229 NK---VIDEAKTRIITPEGIRIDALL 251


>gi|15598834|ref|NP_252328.1| hypothetical protein PA3638 [Pseudomonas aeruginosa PAO1]
 gi|61216741|sp|Q9HXZ3|TILS_PSEAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|9949797|gb|AAG07026.1|AE004783_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 442

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L I 
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V   + +     +  AAR+ARY      A      +++TA   DDQ ET+  R  R  
Sbjct: 83  LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R ++ ++     + W EDPSN D RF R  
Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNY 196

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260
           +RR +           +         +  A   +A L    L    +       D L++ 
Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309
              L   LR  +A     +       + R+           +            +    +
Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364
            R A  +W       LP          VW+       L  +     L ++     R    
Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369

Query: 365 PSGIPPIIAQRALSSM 380
             G    +A R    +
Sbjct: 370 RGGEVLALAGRGRRDL 385


>gi|150392226|ref|YP_001322275.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus metalliredigens QYMF]
 gi|149952088|gb|ABR50616.1| tRNA(Ile)-lysidine synthetase [Alkaliphilus metalliredigens QYMF]
          Length = 467

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 66/315 (20%), Positives = 120/315 (38%), Gaps = 25/315 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E+++ +   L     ++VA+SGG DS+ LL  L  + +     K++     ++H
Sbjct: 1   MLDQVQETIKKY-NLLETGDKVVVAISGGPDSVCLLHVLSRLKAA---YKLEIYGAHLNH 56

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
             R   A+ + +YV++ C +L I   V S        K       A R  RY    E  +
Sbjct: 57  NFRGMDAQMDAQYVANFCEQLNILCFVKSMDVLGYAEKNGLSSEEAGRVLRYEFFEEIGQ 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            + A+ I  AH  +DQ ETV MR  R    +G+       T +      I RP L   R 
Sbjct: 117 KVGASKIAVAHNQNDQAETVLMRLLRGTGIQGL-------TAIRHKRDKIIRPLLETDRG 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLR 227
            I  +     +S   D +N+   + R ++R  +            +  L+   +  +   
Sbjct: 170 KIEDYCETYELSPRIDQTNSQPIYHRNKIRLELIPYLKENYNPNIIEGLHRTAEILKLDN 229

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
             +         +         + +S + I  +  +L   L+R +     G      Y+ 
Sbjct: 230 EYMEEETKRAFEQVCFSQGEHCLELSVKGITPLHLSLKNRLIRYTIERLIGSGENFEYKH 289

Query: 287 MERVMLFLKSGKRGC 301
           ++ V+  L++   G 
Sbjct: 290 IQSVLHLLENETTGK 304


>gi|326794452|ref|YP_004312272.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1]
 gi|326545216|gb|ADZ90436.1| tRNA(Ile)-lysidine synthase [Marinomonas mediterranea MMB-1]
          Length = 431

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 137/335 (40%), Gaps = 15/335 (4%)

Query: 6   IESVRFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISVDHCL 62
           + +++ F+ R       I VA SGG DS  LL  + S L   +  +  I+ SAI V H +
Sbjct: 8   LNALKQFLPRENNRAVTIWVAYSGGLDSEALLHLVASELESIESLYKGIRLSAIHVHHGV 67

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
            E A   V +    C+ L I   V              AAREARY +  +H +     ++
Sbjct: 68  SEHADSWVEHCKTSCAALGIPLIVEKVVIEGV-ASFENAAREARYEVFRKHLQMN--DIL 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + AH  +DQ ETV  R +R    KG+G  G+  +     +  I RP L C R  I  +  
Sbjct: 125 LQAHHANDQAETVLFRLERGTGLKGLG--GIPSSRPLA-DAIIYRPLLNCSRFHIEQYAY 181

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239
             N+ W ED SN D  + R  +R  V +    +   + +++        K    V+ L+ 
Sbjct: 182 SCNLKWIEDESNQDQAYRRNFLRHSVINPWQNNNPDISIRLAANASRIQKEWQVVSRLVG 241

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
           + L        ++  ++L  D     Y +           + P  +++   MLF   GK+
Sbjct: 242 QALNSMCNDDGSLDLNLLPEDE--QSYWISAYLNKKNISFTSPQTQALMG-MLFSNVGKQ 298

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
                    + RRA+ L++    R      L P E
Sbjct: 299 PEYVGAYFRLARRAHRLYVLPLDRAPLLGKLTPNE 333


>gi|150014990|ref|YP_001307244.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052]
 gi|149901455|gb|ABR32288.1| tRNA(Ile)-lysidine synthetase [Clostridium beijerinckii NCIMB 8052]
          Length = 468

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 122/285 (42%), Gaps = 24/285 (8%)

Query: 1   MFLSPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M+   +  ++    +L+ P   IL+A+SGG DS+ LL  L  +   R    I  +A  ++
Sbjct: 1   MYRKVLSYIKD--NNLIKPNDKILIALSGGPDSICLLNVLFEL---REKLNISIAAAHLN 55

Query: 60  HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114
           H LR E A ++ RYV + C+ + I   V        + + +     A R ARY    E  
Sbjct: 56  HLLRGEDAFEDERYVINTCNDMGIKCFVKRVDINAYSKESKLSSEMAGRNARYDFFDEIL 115

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      I TAH  +DQ ETV  R  R    +G+G       I    +  I RP L   R
Sbjct: 116 EKEGFNKIATAHNANDQAETVLFRLMRGTGLEGLG------GIRASRDDKIIRPILCLSR 169

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKV 230
           E++ +++  +N++   D +N +  + R ++R  +    ++     +   + +   L  K 
Sbjct: 170 EEVENYVKLKNLNPRIDKTNFEKIYNRNKIRLDILPYMKENFNEDIVQTLNRMSTLLQKD 229

Query: 231 NNAVAML---IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272
           N  +  L   +     +       I ++I   +  L+  +LR + 
Sbjct: 230 NEFLEKLSAGLYNKYCMECNDYFIIKKEIFKEEEPLVNRVLRHAL 274


>gi|333031348|ref|ZP_08459409.1| tRNA(Ile)-lysidine synthase [Bacteroides coprosuis DSM 18011]
 gi|332741945|gb|EGJ72427.1| tRNA(Ile)-lysidine synthase [Bacteroides coprosuis DSM 18011]
          Length = 431

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 126/329 (38%), Gaps = 38/329 (11%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71
           ++L   A  I+V +SGG+DS+ LLI L  +            A   +  LR E A  +  
Sbjct: 13  KNLFTKADKIIVGLSGGADSVALLILLKDL-------GYSCIAAHCNFHLRGEEADRDED 65

Query: 72  YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +V  +C +L I      +      +  +  +  AARE RY       K  NAT +  AH 
Sbjct: 66  FVVQLCKKLDIKLRSTHFDTYKYAADHKLSIEMAARELRYNWFERLCKEENATKVAIAHH 125

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET+ +   R    KG+       T +   N  I RP L   R++I  FL  R   
Sbjct: 126 RDDNVETLLLNLIRGAGLKGL-------TGIQPKNGNIVRPLLTISRKEIVFFLQSRQQD 178

Query: 188 WCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +  D +N +D F R +VR         +    L+ +   ++    +++    +++  I +
Sbjct: 179 FVTDSTNLEDEFARNKVRLNIIPTMEQINSACLNNIQNTIEYLNQVQLIYTQSISNSINR 238

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
              V   +II   + +  +    + Y +                + ++ +   + S +  
Sbjct: 239 ---VKSENIIDGGKLLKEVSPETILYEICYPLGFNS--------KQIQDIFESISSNESK 287

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLI 329
                +  + +  + + I     +    I
Sbjct: 288 EFHSEQYYLIKNRDRIIIYSKETDHKECI 316


>gi|20808759|ref|NP_623930.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|61217386|sp|Q8R7K9|TILS_THETN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|20517403|gb|AAM25534.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
          Length = 467

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 116/306 (37%), Gaps = 26/306 (8%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           IE V   +     +     I++ +SGG DS+ +L  L ++   +    +K   + V+H +
Sbjct: 11  IEKVLRTIEKYNMIEKDDKIVMGISGGPDSLCMLDVLFNL---KGKFNLKLYVVHVNHMI 67

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R E AK +  +V  +C  L +   +    + +   K       A R  RY    E  K +
Sbjct: 68  RGEDAKKDAEFVEKLCKDLDLPFFLFEENIPYLAKKMGLSEEQAGRYVRYKAFEETLKRV 127

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I  AH  +D  ETV +   R    +G+         +  +N  I RP +   R +I
Sbjct: 128 GGNKIAVAHNKNDVAETVLLNILRGTGLRGL-------IGIKPVNGNIIRPLIEIERREI 180

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAM 236
             +L  +N+    D +N +D + R ++R  V         + + +    +   +      
Sbjct: 181 EKYLKDKNLHPRIDHTNYEDLYTRNKIRLKVIPYIEEVFKIDLVENLSRMAAILLEEDDY 240

Query: 237 LIPKYLTVHMR------SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
           L  K   V  +        I +  D L +  + +   L+R       G+     Y  +E 
Sbjct: 241 LEAKCEEVFNQICEINGEEIKVDVDALKSQHTAIKRRLVRRMYFYVKGETDGLEYGHVED 300

Query: 290 VMLFLK 295
           V+  L 
Sbjct: 301 VLNLLD 306


>gi|238917789|ref|YP_002931306.1| cell cycle protein MesJ [Eubacterium eligens ATCC 27750]
 gi|238873149|gb|ACR72859.1| cell cycle protein MesJ [Eubacterium eligens ATCC 27750]
          Length = 486

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 109/269 (40%), Gaps = 22/269 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             I+ +  ++     L     ++V +SGG+DS+ LL+ L   +  R   + +  A+ V+H
Sbjct: 3   EIIDKIYRYIEQNNMLTDCERVVVGLSGGADSVCLLMVLKGYIERRRL-QTELCAVHVNH 61

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKT 116
            +R+ A D+  +   +C R+ +              +    +  A R+ RY + +E  K 
Sbjct: 62  GIRQEAGDDEEFARALCERMGVEFMAYHIDAAGLAKQLGMSVEEAGRKERYRIFNEACKG 121

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            NA  I  AH  +DQ ETV M   R  + KG+G        +  +   I RP L   R +
Sbjct: 122 RNAR-IAVAHHMNDQAETVLMNLSRGTSLKGIG-------GIRPVRDNIIRPLLSVTRAE 173

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +   L   N  +  D +N  + + R  +R  V        Y+  K        + +A   
Sbjct: 174 VEEVLKDFNQPYVTDATNLCNDYTRNSLRNVVIP------YMTEKVNAHTVENIADAAEE 227

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLF 265
           L   +  +   +  A  + +   D+ +L 
Sbjct: 228 LQKNFDFIEAEAKKAYDKHVYVGDTVVLR 256


>gi|332830557|gb|EGK03178.1| hypothetical protein HMPREF9455_00748 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 438

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 133/326 (40%), Gaps = 41/326 (12%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +S +E        L     I+V VSGG+DS+ LL  LHS         ++      + 
Sbjct: 1   MDISRVEQYIVANGLLAGGEKIIVGVSGGADSIALLDILHSF-------GLECVVAHCNF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
            LR E +  +  +V ++C +  + +  + +            +  AARE RY    +   
Sbjct: 54  HLRGEESNRDAFFVEELCKKYNLKYERIDFDTEAYAAINSVSIEMAARELRYNWFEQLRV 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  I  AH  DD +ET+ +   R    +G+       T +  +N ++ RP L   R+
Sbjct: 114 IHMADKIAVAHHRDDSVETILLNLVRGTGIRGL-------TGIAPVNGYVIRPLLCVSRD 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +L +R +S+ +D +N +D + R ++R  V  + L A+    K+  +   +    VA
Sbjct: 167 EIIEYLKERRMSFVDDSTNNEDMYARNKIRLNVIPM-LEAINPSAKESINKTAEHLTQVA 225

Query: 236 MLIPKYLTVHMRSIIAISQDILNI--------DSTLLFYLLRVSAAICGGQISLPGYRSM 287
            +   Y+     +I A   + +NI           +LF LL                 ++
Sbjct: 226 NIYYMYMAQVKANIFA--DNKINISMLVQYLEPEAILFELL---------SPYGFNSATV 274

Query: 288 ERVMLFL--KSGKRGCVSIGRVVIDR 311
            R+   +  +SGK        ++ DR
Sbjct: 275 RRIFESVISQSGKIFYSETHELLKDR 300


>gi|255008100|ref|ZP_05280226.1| putative cell-cycle protein [Bacteroides fragilis 3_1_12]
 gi|313145817|ref|ZP_07808010.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12]
 gi|313134584|gb|EFR51944.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides fragilis 3_1_12]
          Length = 431

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 105/275 (38%), Gaps = 32/275 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE  + F         +LVA+SGG+DS+ LL  L S+            A   +  LR+ 
Sbjct: 10  IEKEKLF----YLNDKVLVALSGGADSVALLRLLLSM-------GYTCEATHCNFHLRDK 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C    +    V +      +     +  AARE RY       K   A 
Sbjct: 59  ESDRDEAFVRQLCHEAEVPLHTVHFDTIQYAADKHISIEMAARELRYEWFETLRKQRGAA 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ETV +   R     G+         +   N  I RP L   R++I ++
Sbjct: 119 VIAVAHHKDDSVETVLLNLIRGTGINGL-------LGIRPKNGNIVRPLLCLSRDEIITY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L + N  +  D +N  D + R ++R       + +      ++        D     N  
Sbjct: 172 LQRMNQDYVTDSTNLLDDYTRNKIRLNLLPLMQEINPSVKESIIRTTNYLNDTATLYNKG 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +     + LT     I A+ Q+   +   +LF LL
Sbjct: 232 IEEARTRVLTSEGIRIEALLQEP--VPGAILFELL 264


>gi|302388372|ref|YP_003824194.1| tRNA(Ile)-lysidine synthetase [Clostridium saccharolyticum WM1]
 gi|302199000|gb|ADL06571.1| tRNA(Ile)-lysidine synthetase [Clostridium saccharolyticum WM1]
          Length = 458

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 31/346 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M+ + ++ +R   R       ++VA+SGG+DS+ LL+ L+ +  +         A+ V H
Sbjct: 1   MYRTILDYIRR-NRLFAPGDRVIVALSGGADSVCLLVVLNELKEELGLEL---KAVHVHH 56

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAK 115
            LR   A  +  Y  D+ +RL ++ S V    +    +    +  A R  RY +  +   
Sbjct: 57  GLRGKEADRDRDYSRDLSARLGVSFSCVQVDAALYAGEHGMSVEEAGRHLRYQIFEKERL 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             + T I  AH  DDQ ET+     R    KG+G           L   I RP L   RE
Sbjct: 117 DFSGTKIAVAHHRDDQAETILYNLFRGTGLKGLGGM-------RPLRDRIVRPLLCVGRE 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK----MKKFQDLRVKVN 231
           +I ++L ++ IS+CED +N    + R R+RR +       +  +    +    ++  + +
Sbjct: 170 EILAYLEEKRISYCEDSTNAQTDYVRNRIRRRILPEIREEVNRRAGENILHAGEMAAQAD 229

Query: 232 NAVAMLIPKYLTVHMRSIIAISQD----------ILNIDSTLLFYLLRVSAAICGGQISL 281
             +     K L       +  S            +L  D+ +  Y++R         +  
Sbjct: 230 AYLEKQAEKILKARGVGEMEASGLRPACGIDAAVLLAEDNIIRNYVIRRMIRSVNESMKD 289

Query: 282 PGYRSMERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLP 326
                +E     L    R  V +   ++  R    LWI R  +  P
Sbjct: 290 ITMTHVESAAALLFGSDRRQVDLPCGLIAVRTNGELWIKRKEQEEP 335


>gi|254242336|ref|ZP_04935658.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126195714|gb|EAZ59777.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 442

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L I 
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V   + +     +  AAR+ARY      A      +++TA   DDQ ET+  R  R  
Sbjct: 83  LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R ++ ++     + W EDPSN D RF R  
Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNY 196

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260
           +RR +           +         +  A   +A L    L    +       D L++ 
Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309
              L   LR  +A     +       + R+           +            +    +
Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364
            R A  +W       LP          VW+       L  +     L ++     R    
Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369

Query: 365 PSGIPPIIAQRALSSM 380
             G    +A R    +
Sbjct: 370 RGGEVLALAGRGRRDL 385


>gi|227544681|ref|ZP_03974730.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri CF48-3A]
 gi|227185327|gb|EEI65398.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri CF48-3A]
          Length = 470

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 133/308 (43%), Gaps = 23/308 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +   RFF         ++VAVS G DSM LL  L  + S     + +     ++H 
Sbjct: 14  FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLPSK---YRPQIIVAHMNHE 66

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR+ ++ E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    E  K   A+
Sbjct: 67  LRKQSELEERFIRQYCKQNDLKLAVAHWPQDLHPQTGVENAARQARYQFFREVMKDNQAS 126

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  +D  ET+ M+  R        L G+ D   +     + RP L   ++ ++ +
Sbjct: 127 ILLTAHHQNDLAETMLMKMARGGQL--SQLVGIRDWRPFASG-TLIRPLLPFSKQQLKKY 183

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233
            LQ ++ W ED +N D   +R R R  +  +        +   +    ++       +  
Sbjct: 184 ALQHHLKWYEDKTNKDLSIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLAWRDQE 243

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           VA  +   +    R I+A    +L     +   +LR      G  I     + ++ ++  
Sbjct: 244 VADQLAACVDQQGRMILA---RLLQNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLQI 298

Query: 294 LKSGKRGC 301
           L++ ++  
Sbjct: 299 LENEQKPQ 306


>gi|119477118|ref|ZP_01617354.1| tRNA(Ile)-lysidine synthase [marine gamma proteobacterium HTCC2143]
 gi|119449481|gb|EAW30719.1| tRNA(Ile)-lysidine synthase [marine gamma proteobacterium HTCC2143]
          Length = 446

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 68/338 (20%), Positives = 122/338 (36%), Gaps = 25/338 (7%)

Query: 2   FLSPIESVRFFVRSLVYP----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+  +     F+   + P       LVA SGG DS  LL  L  V            A+ 
Sbjct: 3   FILAMPITERFLNQQLNPYTEAGRWLVAYSGGVDSCVLLDCLIGVAD-----HPPIVAVH 57

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKT 116
           ++H L+  ++   ++     + L IA   +           L  AAR ARY       + 
Sbjct: 58  INHQLQAASEQWRKHCEKRAAALNIAIICIDVDVDLHSGRSLEDAARVARYDAFETIVR- 116

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +  ++   H  DDQ+ET+ +R  R    +G         +    +  ++RP L   R  
Sbjct: 117 -HDDVLFFGHHLDDQVETMLLRLLRGSGSRGAAAMPSSRAL---GSGQLARPLLDIPRSA 172

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I ++     + W +D SN    F+R  +R  V        +   ++       +N   A 
Sbjct: 173 IETYATINQLEWIDDSSNQSLDFDRNFLRLEVLP-AFEQRWPGYRQTLSRAALLNEEAAG 231

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR------VSAAICGGQISLPGYRSMERV 290
           L  +   + ++ +   SQ    +   LL  L R      +   +   Q++ P    +  V
Sbjct: 232 LNDELAAIDLQQMGVSSQSSATLPIELLSRLSRPRQKNSLRYFLKLNQLATPSSAQLNEV 291

Query: 291 MLFL---KSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325
           +  L   +      V  G V + R  + +   R +  +
Sbjct: 292 IDQLLGARIDATPLVEWGDVQLRRFGDKVVAMRRMSPM 329


>gi|150025676|ref|YP_001296502.1| tRNA(Ile)-lysidine synthase [Flavobacterium psychrophilum JIP02/86]
 gi|149772217|emb|CAL43693.1| tRNA(Ile)-lysidine synthase [Flavobacterium psychrophilum JIP02/86]
          Length = 434

 Score =  209 bits (533), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 125/315 (39%), Gaps = 33/315 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
            +    +L+A SGG DSM +L     +           +    +  LR   +  + ++V 
Sbjct: 15  FLKEKKLLLATSGGIDSMVMLHLFQKL-------NYNIAIAHCNFQLRGLESFGDQQFVQ 67

Query: 75  DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +  S+ +I   V  +         +     AARE RY    E  +T N   I+TAH  DD
Sbjct: 68  EYASKNKIPAFVTHFDTENFAKDYKLSTQIAARELRYNWFYELLETENFDFILTAHHADD 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET  +   R     G+       T + + N  I RP L   R +I  +  + +I W E
Sbjct: 128 NLETFIINLTRGTGLDGL-------TGIPEQNEQIIRPLLPFSRSEIEEYTKENSIQWRE 180

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN  D++ R ++R  +  I    L +    F D  +K  N     + +   +   + I
Sbjct: 181 DSSNASDKYLRNKIRHDLIPI----LKVLNPNFLDSFLKTQNY----LQEAQVMIEDATI 232

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISL------PGYRSMERVMLFLKSGKRGCVSI 304
            I Q +   D+ ++ + L+    +   +  L        + + E +   ++S     +  
Sbjct: 233 MIYQQVAKEDNEIISFDLKKLTQLPNYKSYLYQWLREYDFTAWEDIYNLVESQSGKQIFS 292

Query: 305 GRVVIDRRANFLWIT 319
            +  + +  +FL ++
Sbjct: 293 KKYRLLKDRDFLILS 307


>gi|107103152|ref|ZP_01367070.1| hypothetical protein PaerPA_01004221 [Pseudomonas aeruginosa PACS2]
          Length = 442

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 124/376 (32%), Gaps = 34/376 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L I 
Sbjct: 25  VAFSGGLDSTVLLHLLVQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V   + +     +  AAR+ARY      A      +++TA   DDQ ET+  R  R  
Sbjct: 83  LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+       ++       + RP L   R ++ ++     + W EDPSN D RF R  
Sbjct: 140 GLRGLAAMPASRSL---GGGRLCRPLLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNY 196

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260
           +RR +           +         +  A   +A L    L    +       D L++ 
Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309
              L   LR  +A     +       + R+           +            +    +
Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364
            R A  +W       LP          VW+       L  +     L ++     R    
Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369

Query: 365 PSGIPPIIAQRALSSM 380
             G    +A R    +
Sbjct: 370 RGGEVLALAGRGRRDL 385


>gi|160894589|ref|ZP_02075365.1| hypothetical protein CLOL250_02141 [Clostridium sp. L2-50]
 gi|156863900|gb|EDO57331.1| hypothetical protein CLOL250_02141 [Clostridium sp. L2-50]
          Length = 485

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 127/329 (38%), Gaps = 40/329 (12%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E +  F++    L    + +V VSGG+DS+ LL  L  +   R   ++K  A+ V+H +R
Sbjct: 8   EQIYQFIKEQNLLEAGDNCIVGVSGGADSICLLTVLAGL---REKIELKLYAVHVNHMIR 64

Query: 64  E-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
              A  +  YV++ C +L I              + +     A R ARY   +  A    
Sbjct: 65  GTEADADESYVAEYCKKLGIPCDCYHIDVPQLAKEQKLTEEEAGRNARYGAFARAADKYG 124

Query: 119 AT--LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            T   +  AH  +D  ETV +   R     G G++GM    +      I RP L C R +
Sbjct: 125 ITDYKVAVAHNKNDVAETVLLNMVR-----GTGIAGMAGIPVKRD--RIVRPLLSCTRTE 177

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I ++L Q+ I +C D +N ++ + R ++R  V        + ++       +    A A 
Sbjct: 178 IEAYLEQQGIQYCTDSTNLENDYARNKIRNQVIPA-----FNEINTQAAAHISQAAAYAG 232

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
           +   Y+   +   +    +I         Y+L +                 E +   +  
Sbjct: 233 MYDTYVMKQVGYFLDEHMEIRKQTGKTDAYVLEIGKL----------REQDELIEDLVIL 282

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNL 325
              G VS GR  I +        R V+ L
Sbjct: 283 ELIGRVSGGRKDIGQNH-----VREVKKL 306


>gi|295134680|ref|YP_003585356.1| PP-loop family protein [Zunongwangia profunda SM-A87]
 gi|294982695|gb|ADF53160.1| PP-loop family protein [Zunongwangia profunda SM-A87]
          Length = 437

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 126/315 (40%), Gaps = 39/315 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78
           A +++AVSGG DSM L+     V       K+ F+    +  LR+  +  +  +V     
Sbjct: 19  AKLILAVSGGVDSMVLMRLCKKV-------KLDFAIAHCNFNLRDNESDGDEEFVVRAAQ 71

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L +   +  +       + +  +  AARE RY    E     NA  I+ AH  +D LET
Sbjct: 72  NLELKVHIQHFNTISFAEEHKLSIQMAARELRYHWFEELRIAENADYILVAHHANDSLET 131

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +   R    +G+         +   N  I RP L+  R++I ++     I W ED SN
Sbjct: 132 FLINFVRSTGPEGLA-------GIKAENDKILRPLLKFSRQEIENYARDHQILWREDSSN 184

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253
              ++ R ++R  V  I        ++ F++ +  +   + ++      ++ +++  +  
Sbjct: 185 ASTKYLRNKIRHQVIPILEEMNPQFLEGFKNTQEYLRQQLDLVEDYTELIYKKAVKKVDF 244

Query: 254 --------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
                      L     +L+ LL+         +           +L  +SGK    +  
Sbjct: 245 GYSFDVLFLQRLPHAKAVLYQLLKTFGFTEWNDVYN---------LLEAQSGKMVFSNTH 295

Query: 306 RVVIDRRANFLWITR 320
           R+V DR  + L++T+
Sbjct: 296 RLVKDR--DELYLTK 308


>gi|296387857|ref|ZP_06877332.1| putative cell cycle protein [Pseudomonas aeruginosa PAb1]
          Length = 442

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L I 
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V   + +     +  AAR+ARY      A      +++TA   DDQ ET+  R  R  
Sbjct: 83  LRVERVQVA-VGGSIEQAARDARYRAFQ--ASLGEGQVLLTAQHLDDQAETLLFRLLRGA 139

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R ++ ++     + W EDPSN D RF R  
Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNY 196

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260
           +RR +           +         +  A   +A L    L    +       D L++ 
Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309
              L   LR  +A     +       + R+           +            +    +
Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364
            R A  +W       LP          VW+       L  +     L ++     R    
Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369

Query: 365 PSGIPPIIAQRALSSM 380
             G    +A R    +
Sbjct: 370 RGGEVLALAGRGRRDL 385


>gi|154248857|ref|YP_001409682.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1]
 gi|154152793|gb|ABS60025.1| tRNA(Ile)-lysidine synthetase [Fervidobacterium nodosum Rt17-B1]
          Length = 457

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 119/306 (38%), Gaps = 25/306 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +  +R +V      + +L+AVSGG DS+ +L   +    +     I     + +H 
Sbjct: 21  FKKFVNFIREYV---PNCSSVLLAVSGGVDSIVMLDLFNRAKDELL---INIGVATFNHK 74

Query: 62  LRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           LR  A DEV +V   C  L I        V     + +  +   AR  RY  +   AK  
Sbjct: 75  LRTEADDEVIFVQKFCEGLGIPFFPGEADVKMYCEQNKLSIEEGARILRYEFLKRTAKEN 134

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + I TAH  +D LET+ +R  +     G+         +  +N    RP +   R++I
Sbjct: 135 GYSFIATAHNANDLLETIILRQIKGTGPFGLA-------AIKPINGIFIRPLIFFTRKEI 187

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +  +R + +  D +N D  + R  VR  +  + L  +   ++       K    +   
Sbjct: 188 EEYAKERKLEYVIDRTNFDIEYNRNFVRHKIVPL-LKEINPSVESAYLKLAKNIWELDSY 246

Query: 238 IPKYLTVHMRSIIAISQDIL----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           + + + +   ++  I  + +    N +   +  + R S  + G       Y  +ER    
Sbjct: 247 VDRAIGIDKSNLEKIGNNFIFKLVNDEYLQIEQIRRYSLLLFGK---PLDYEKLERFKKA 303

Query: 294 LKSGKR 299
             SGK 
Sbjct: 304 RSSGKP 309


>gi|239617939|ref|YP_002941261.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1]
 gi|239506770|gb|ACR80257.1| tRNA(Ile)-lysidine synthetase [Kosmotoga olearia TBF 19.5.1]
          Length = 469

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 128/322 (39%), Gaps = 29/322 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDV 76
               ILVAVSGG DSM LL  L   +S +     +    ++DH LR+ + ++E   ++  
Sbjct: 20  QGEKILVAVSGGKDSMALLHFL---VSKKERLGCEICVANMDHGLRDDSGREEAVMIASF 76

Query: 77  CSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           C +  +        V  +  +     L  AAR  RY  +    + + A  I  AH  +D 
Sbjct: 77  CEKHDVPFYHERRDVTQYHKNNRGLSLEEAARIVRYDFLFNAREKLGADKIALAHHLNDL 136

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ MR  R    KG+         +  +N  I RP L    ++I  ++    I + ED
Sbjct: 137 VETMLMRIARGTGLKGV-------ISMKPMNNSIIRPLLSVGVQEILDYVTINMIPYKED 189

Query: 192 PSNTDDRFERVRVRRFVRDI--DLHALYLK---------MKKFQDLRVKVNNAVAMLIPK 240
           P+N  + ++R  +R  +  +  +L+A +           M+ +  +  KV + ++ L  +
Sbjct: 190 PTNVLEVYDRNFIRMRIVPLFKELNASFEDAIYRFYMNIMESYNIIEEKVRSFISSLETE 249

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKR 299
                ++         L     L+  ++R            P    +E  M  L K  +R
Sbjct: 250 TENGKVQRCFGELDIFLKEQDALVAEVVREIVMRLSEDGYPPSRERIEAFMKLLGKQDRR 309

Query: 300 GCVSIGRVVI-DRRANFLWITR 320
             +     +   R   +++  R
Sbjct: 310 WTIEFKEDIKSSRLGKYIFFYR 331


>gi|260102340|ref|ZP_05752577.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus helveticus DSM 20075]
 gi|260083849|gb|EEW67969.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus helveticus DSM 20075]
          Length = 418

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 128/323 (39%), Gaps = 24/323 (7%)

Query: 8   SVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +  F R     V    +LVA S G DSM LL  L ++  +      K  A   +H LR 
Sbjct: 2   KIADFFRENNINVTDKKLLVAASSGPDSMALLDMLKNLQDN---AHFKLMAAHFNHQLRA 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            +++E + +   CS   +   +  W K  +P+ G+ AAAR ARYA +++ AK  NA  ++
Sbjct: 59  DSEEESKLLKKYCSENHVPLFIAKWPKEDQPKVGIEAAARHARYAFLTQMAKENNADYLL 118

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DD LE + ++  R    + M    M   +     + + RP L   + ++  +  +
Sbjct: 119 TAHHGDDLLENILLKFIRSGNPEEMNSLQMIGKM---HGIKLLRPLLGYSKAELLQYNQE 175

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             I +  D +N  D   R R+R  V  +    L  +        +  +  +  LI     
Sbjct: 176 YQIDFVIDSTNQADETMRNRLRHHVVPL----LKKENPALIRNALFFSQKMDELID---- 227

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
                 +      +    + L    R+ +               +R + + K  +R   +
Sbjct: 228 -----YVDEKNSAMGQLESFLNVAYRIKSEALSQLTEKERIFFWQRTI-WQKYHRRVNEN 281

Query: 304 IGRVVIDRRANFLWITRAVRNLP 326
           +G  V+    N+ ++ +    L 
Sbjct: 282 LGNFVVMEYQNYFYLYKKQNILE 304


>gi|159899546|ref|YP_001545793.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892585|gb|ABX05665.1| tRNA(Ile)-lysidine synthetase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 486

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 135/363 (37%), Gaps = 36/363 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYV 73
            L   A ++VAVSGG DS+ LL  L ++ +   +   +     +DH LR E +  E  +V
Sbjct: 16  RLASAACLVVAVSGGPDSLALLHRLTALATPYGW---RLHVAHLDHGLRGEQSAAEAAFV 72

Query: 74  SDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +++ +       I    V     +   GL AAAR  RY  ++E A    A  ++  H  D
Sbjct: 73  AEIAADWGLTATIELRDVDQVAKQYHVGLPAAARATRYRFLAEVALQQQADAVVLGHQSD 132

Query: 130 DQLETVYMRSQRDYAEKGM----------GLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           DQ ETV +   R     G+          G           +   + RP L   R++I +
Sbjct: 133 DQAETVLLHVLRGTGPSGLSAMRPRTEWVGWRVTAGMPHQAVGPALIRPMLNITRDEIEA 192

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNN 232
           +  ++ +    DP+N    + R R+R  +  +        + AL    +        + +
Sbjct: 193 YCDEQQLEPRRDPTNNSLEYTRGRIRHQLLPLLGEYNAKVVSALARTARLAAIETDYMQS 252

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            +       +     +I    +   ++   L  + +R +  +   +        ++  + 
Sbjct: 253 ELDRQWQHLIEFEPGAITFHREQWNHMHPALQRHAIRRAVYLLRPERDELTSSQLDHALS 312

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT-----------LILYPEETTVWDGR 341
            + S +  C     +V+ R+ +   +T A    PT            +     T + D R
Sbjct: 313 AMNSLQLFCQMPHNLVLHRKPHGWTMTVATTMQPTNDEPQLSIDEWPLNQQGMTPLPDER 372

Query: 342 YQF 344
           ++ 
Sbjct: 373 WRV 375


>gi|307129838|ref|YP_003881854.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii 3937]
 gi|306527367|gb|ADM97297.1| tRNA(Ile)-lysidine synthetase [Dickeya dadantii 3937]
          Length = 445

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 129/324 (39%), Gaps = 17/324 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            H LVA SGG DS      LH +   R    +   A+ V H L   A     +    C R
Sbjct: 26  GHYLVAYSGGLDSSV---LLHLMTRLRRRRALSLRAVYVHHGLSAHADTWAEHCRVQCLR 82

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +++  V+  +      G+ AAAR ARY  + +H    +   ++TA   DDQ ET  +  
Sbjct: 83  WQVSFDVLPVQVDAHDGGVEAAARAARYQALQQHL--HDGETLLTAQHQDDQSETFLLAL 140

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R                     +W+ RP L   RE + ++     ++W ED SN D+R+
Sbjct: 141 KRGSGPA---GLASMAAAAQSNGVWLQRPLLGMTREQLDAYARAYQLAWVEDDSNADERY 197

Query: 200 ERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +RR V  +           + +  +L  +    +  L+ + L     +  A+S   
Sbjct: 198 DRNFLRRQVLPLLKRRWPHFPSAVARSAELCAEQEQLLDELLAESLATLRNADGALSVAA 257

Query: 257 LN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRR 312
           L  + +   F LLR   A  G    +P    + R+       +     C+ +G   + R 
Sbjct: 258 LTPMSTARRFALLRRWLAEQG--AHMPSRGQLTRLWEDVAASRDDANPCLQLGVWQVRRF 315

Query: 313 ANFLWITRAVRNLPTLILYPEETT 336
            ++L++  A+  L   +L  +   
Sbjct: 316 RHYLYLLPAMNPLTEYVLPWQPAA 339


>gi|256823094|ref|YP_003147057.1| tRNA(Ile)-lysidine synthetase [Kangiella koreensis DSM 16069]
 gi|256796633|gb|ACV27289.1| tRNA(Ile)-lysidine synthetase [Kangiella koreensis DSM 16069]
          Length = 423

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 117/310 (37%), Gaps = 18/310 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI+VA+SGG D   L +     L+  S      SA+ +DH L+  + D  +     C  L
Sbjct: 25  HIVVALSGGVD--SLSLLHALHLARTSDSSYSLSAVYIDHQLQAPSSDWAKQNQRFCESL 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I    V  +  K    L + AR+ARY  +SE       T ++T    +DQ ET  ++  
Sbjct: 83  DIPFQSVQVEVDKDLASLESTARKARYQALSEFV-PNPQTCLVTGQHLNDQAETFLLQLF 141

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    KG+        +      +++RP L   R+ + S+     +   EDP+N D    
Sbjct: 142 RGAGSKGLASM---PKLTDFAQGYLARPLLTVSRKALESYCNSNGLQAIEDPTNQDTDIR 198

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL--- 257
           R  VR  V  +         K       ++      L+ +   +   +   + Q+ L   
Sbjct: 199 RNFVRHQVMPLVEQKWPQASKVIASAS-EIQADNQQLLDELAAIDFENCYEVKQNSLVLA 257

Query: 258 ---NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311
               +    +  LLR     CG    +P    ++++   ML  K      + +    I R
Sbjct: 258 EVRQLSPQRVRNLLRYWLEGCG--ADMPSQAVLQQIQTQMLDAKEDANPAIEMSSGSIRR 315

Query: 312 RANFLWITRA 321
             + L+    
Sbjct: 316 YRDGLYWVTE 325


>gi|116051635|ref|YP_789526.1| hypothetical protein PA14_17280 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586856|gb|ABJ12871.1| putative cell cycle protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 442

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L I 
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQAVCRSLGIP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V   + +     +  AAR+ARY      A      +++TA   DDQ ET+  R  R  
Sbjct: 83  LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R ++ ++     + W EDPSN D RF R  
Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNY 196

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260
           +RR +           +         +  A   +A L    L    +       D L++ 
Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309
              L   LR  +A     +       + R+           +            +    +
Sbjct: 257 RIAL-EPLRHLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364
            R A  +W       LP          VW+       L  +     L ++     R    
Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369

Query: 365 PSGIPPIIAQRALSSM 380
             G    +A R    +
Sbjct: 370 RGGEVLALAGRGRRDL 385


>gi|314932731|ref|ZP_07840101.1| tRNA(Ile)-lysidine synthase [Staphylococcus caprae C87]
 gi|313654561|gb|EFS18313.1| tRNA(Ile)-lysidine synthase [Staphylococcus caprae C87]
          Length = 428

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 17/234 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            AHI+VAVS G DSM LL   HS+L+         + + V+H LR  + +E  ++++ C 
Sbjct: 11  DAHIIVAVSTGIDSMTLL---HSLLNQYRDTYKTLTCVHVNHGLRAQSVEEEIFLNEYCQ 67

Query: 79  RLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + +I   V     SK       +   AR  RY    E  + +NA +++TAH  DDQLET+
Sbjct: 68  KNQIKLYVKHLDLSKIVDKGNSIQNEARRLRYQWFGEVIRDLNADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R     + +     GM D   Y+ +  + RP L   ++DI ++  +  + + ED SN 
Sbjct: 128 LYRVLSGRSTRSS--LGMSDISNYE-DYLVCRPLLNIYKKDIINYQEKYQVPYFEDSSNQ 184

Query: 196 DDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           D ++ R  +R+ +         +D H L LK+K++ D  +++    A     + 
Sbjct: 185 DTKYVRNDIRQRIIPSIDNNPFLDSHHL-LKLKEWHDNELQLLKEHARYFVAHF 237


>gi|223044415|ref|ZP_03614448.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           capitis SK14]
 gi|222442204|gb|EEE48316.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           capitis SK14]
          Length = 428

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 17/234 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            AHI+VAVS G DSM LL   HS+L+         + + V+H LR  + +E  ++++ C 
Sbjct: 11  DAHIIVAVSTGIDSMTLL---HSLLNQYRDTYKTLTCVHVNHGLRAQSVEEEIFLNEYCQ 67

Query: 79  RLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + +I   V     SK       +   AR  RY    E  + +NA +++TAH  DDQLET+
Sbjct: 68  KNQIKLYVKHLDLSKIVDKGNSIQNEARRLRYQWFGEVIRDLNADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R     + +     GM D   Y+ +  + RP L   ++DI ++  +  + + ED SN 
Sbjct: 128 LYRVLSGRSTRSS--LGMSDISNYE-DYLVCRPLLNIYKKDIINYQEKYQVPYFEDSSNQ 184

Query: 196 DDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           D ++ R  +R+ +         +D H L LK+K++ D  +++    A     + 
Sbjct: 185 DTKYVRNDIRQRIIPSIDNNPFLDSHHL-LKLKEWHDNELQLLKEHARYFVAHF 237


>gi|182680532|ref|YP_001834678.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182636415|gb|ACB97189.1| tRNA(Ile)-lysidine synthetase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 400

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 142/324 (43%), Gaps = 15/324 (4%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +SP   V  F R L +   +L+AVSGG DS+ L+  L +  ++  +     S  SVDH 
Sbjct: 66  LISPATLVDLF-RPLEHARKVLLAVSGGPDSVALM-LLAAQWAEAVWKAPPLSVASVDHG 123

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  +  E   V++  +RL + H ++ W+  KP+T L   AR+ARY L+  HA+TI A  
Sbjct: 124 LRPDSLAEAEQVAEWAARLGLPHHILRWEGEKPKTRLQERARDARYGLLIAHAETIGADY 183

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ET+  R  R    +G  L GM +++     L  +RP L   + ++ +  
Sbjct: 184 LVTAHHADDQAETILFRLLRGSGPRG--LKGM-ESLFQRGELLHARPLLGMTKAELLAIC 240

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAM 236
                 +  DPSN D RF R R+RR         +D  AL    ++       +    A 
Sbjct: 241 DTCRHPFFTDPSNLDVRFARARLRRMERRFASAGLDRAALLRLGQRAARAEAVIAERAAA 300

Query: 237 LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
           L            + +   ++      +L  L+         +   P    +E +   L+
Sbjct: 301 LRASLPAERAPGFVQLDLALVSREPEEILLRLIEAEILDLTARERPPRLERLEALCTLLR 360

Query: 296 S----GKRGCVSIGRVVIDRRANF 315
           +    GK    ++G V +   A  
Sbjct: 361 AALLQGKVFKSTLGGVRLHLDAGG 384


>gi|312888854|ref|ZP_07748417.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603]
 gi|311298729|gb|EFQ75835.1| tRNA(Ile)-lysidine synthetase [Mucilaginibacter paludis DSM 18603]
          Length = 445

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 141/359 (39%), Gaps = 25/359 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+ I   + F ++      +LVAVSGG DS+ L   L             F     +  
Sbjct: 7   FLNFIAQNQLFTQN----DRLLVAVSGGRDSVVLAHLLKQ-------AGFNFGIAHCNFQ 55

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR + A+ E  + S +   L +    +S+       +       AAR+ RY    +    
Sbjct: 56  LRIDEAQAEQAFTSQLADALTVPFHTISFDTQTYARQNGISTQMAARDLRYTWFEQIRNE 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              + I  AH  +D +ET+ +   R     G G++GM    +   N ++ RP L   R++
Sbjct: 116 HGYSYIAVAHHQNDSVETILLNLTR-----GTGIAGMHG--ILPQNGYLVRPLLFLNRDE 168

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I + + Q  + + ED SN   ++ R ++R  V    L  L  K+++  D  ++    + +
Sbjct: 169 IDTIVDQNGLHFMEDSSNASSKYARNKIRHQVIP-PLKELNPKLEETFDRNMERFRELEL 227

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
           L+   L    + ++    D +++  + +  L      + G           +E VM  L 
Sbjct: 228 LLNHQLEQLKQQMMVQVGDEIHLHISAVKSLYPQRLLLYGLLHPYGFSEPVIEDVMASLD 287

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
                       V+    + L +++       ++++  +  V+  +++   L D    I
Sbjct: 288 KHAGRVFESQGFVLLLDRDKLILSKRRERPGPVLIHQNDHEVYYSQFKITLLHDDSPLI 346


>gi|260753788|ref|YP_003226681.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258553151|gb|ACV76097.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 329

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 22/308 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             + +AVSGGSDS+ LL+         +       A++VDH +R  A +E R+V+ +C +
Sbjct: 30  GKLGIAVSGGSDSLALLLL-------GAVSDFPVEAVTVDHGMRPEAAEEARFVAQICQQ 82

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + + H +++ K      G+ AAAR  RYAL++E AK  N   +MTAH  DDQ ET  MR+
Sbjct: 83  IGVPHQILTTKIEANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADDQAETFLMRA 142

Query: 140 QRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            R     G+        I  +   L + RP L   R  +   + +   ++  DPSN +  
Sbjct: 143 ARGSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVKKAGFTFVSDPSNDNPH 202

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           ++R   RR ++     A     ++      +        I         + I    ++L 
Sbjct: 203 YDRTHFRRLLK-----ASPWINRQHIAEAARYCQQSEEAIEWITAKEAAARIRKKGEVLY 257

Query: 259 IDS-----TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           +D       +L  L+  +     G  +L    ++ R +  L+ GK+  ++    VI +  
Sbjct: 258 LDPTELPIEILRRLVLRAMETITGNTAL-RGSALSRFIRSLQQGKKVMLA---DVIGQGG 313

Query: 314 NFLWITRA 321
            +    RA
Sbjct: 314 EYWRFYRA 321


>gi|261364547|ref|ZP_05977430.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa ATCC 25996]
 gi|288567113|gb|EFC88673.1| tRNA(Ile)-lysidine synthase [Neisseria mucosa ATCC 25996]
          Length = 416

 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 113/306 (36%), Gaps = 16/306 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG DS+ LL  L  +   R    +   A+ V H L   A D + + + +C    
Sbjct: 2   VTVGLSGGLDSVVLLHTLACL---REELGLDVHALHVHHGLSRNADDWLVFCTRLCQEWN 58

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +       +  K   G+ AAAR+ARY + S       +++I  AH  DDQ+ET  + + R
Sbjct: 59  VPFRSAKVEVKKDGLGIEAAARKARYQVFS----DDPSSVIALAHHQDDQIETFMLAAVR 114

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               K +        +  +  +W  RP L   R+++ ++    N+   ED SN D  F R
Sbjct: 115 GGGIKALAAMPQWRKLNEEKQIW--RPLLTFSRKELENYAAACNLPNIEDESNADTAFLR 172

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP----KYLTVHMRSIIAISQDIL 257
             +R     +    +    +        +   +A+L       Y TV       +S+   
Sbjct: 173 NWMRYEALPVWRERIPNFDRHVCANIRSLQTDLAILDEVVDADYQTVCESGRFQVSRW-Q 231

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
                    +L          I     R +      L   +      G   +    +FL+
Sbjct: 232 TFSEARRSRIL--WRFFKENGIVESSPRKLADFARILLEAETAQWQFGETSVCLYRDFLF 289

Query: 318 ITRAVR 323
           I +  +
Sbjct: 290 ILKQSQ 295


>gi|58582920|ref|YP_201936.1| cell cycle protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58427514|gb|AAW76551.1| cell cycle protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 434

 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 133/355 (37%), Gaps = 19/355 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    
Sbjct: 12  IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68

Query: 77  CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C  L++   +V  +  +    GL AAAR AR+   +          +  AH  DDQ ET 
Sbjct: 69  CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAFAHTLAA--GEWLTLAHHRDDQAETF 126

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +R+ R    +G+             +  + RP L   R D+ ++ L + + W EDPSN 
Sbjct: 127 LLRALRASGPEGLAAM---RPQRPFADGTLWRPLLAHSRADLLAYALAQEVRWIEDPSNA 183

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAI 252
           D R +R  +R  V  +                    +A A+L+ + + +      +  A+
Sbjct: 184 DPRHDRNFLRSQVLPLLQQRWPQAADALARSAQLSADASALLLQQDMALLPSVRTASGAL 243

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVID 310
               L          L  +         LP     ++ER +    + ++ C +  +V + 
Sbjct: 244 DLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVR 303

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
           R    L++ R     PT     +    WDG    Q    + +++   +  +   P
Sbjct: 304 RWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQLPDGAQLRLLGATGLRFAQP 353


>gi|118594638|ref|ZP_01551985.1| hypothetical protein MB2181_03180 [Methylophilales bacterium
           HTCC2181]
 gi|118440416|gb|EAV47043.1| hypothetical protein MB2181_03180 [Methylophilales bacterium
           HTCC2181]
          Length = 446

 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 164/428 (38%), Gaps = 63/428 (14%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A+SGG DSM L+ AL+ +  +    K+   A  + H L   A + + +    C +L I 
Sbjct: 31  IALSGGCDSMVLMYALNQLKDEL---KLSIKAHYIHHGLSAYADEWLAFCEAACRKLNIP 87

Query: 84  HSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +    +  P  G+  AAR+ RY  ++     ++  +I TAH  +DQ ET+ ++  R 
Sbjct: 88  FDSMRVDTNTLPSLGIEGAARKLRYEALA----QLSVGVIATAHHENDQAETLLLQLIR- 142

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G GL G+     YD    + RP LR +R+ I  F     I + ED SN D RF+R 
Sbjct: 143 ----GAGLKGLAAMPEYDKEKNLWRPLLRVQRQVIEDFADIYEIVFIEDDSNEDTRFDRN 198

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR-SIIAISQDILNIDS 261
            +R+ +    L  LY +     +   +    +A  +  + ++    S    S+D+  ++ 
Sbjct: 199 FLRKNI----LPQLYERFPHAANTIARSAKLIASGLDLHQSIAESDSESYFSKDLARLNL 254

Query: 262 TLLF-----YLLRVSAAICGGQIS-LPGYRSMERVMLFLKS---GKRGCVSIG-RVVIDR 311
            ++       ++ +           +P  + M+     +K      +  + I   V I  
Sbjct: 255 MMMRDLNQERVINLIRWWLEKHRYKMPTLKVMQEAYKQIKDRRKDAQINIQIAPNVSIRA 314

Query: 312 RANFLWITRAVRN---------------LPTLILYPEETTVWDGRYQFQNLSDSLIQIGP 356
             N LW+   V N               LP         T+ DG      L    I+I  
Sbjct: 315 YKNELWLVENVTNAADFEIYWRGEDTITLPDASKLSFTKTIGDGI-SVDKLGTQTIRIQN 373

Query: 357 QSYRKADVPSG-IPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKV 415
           +   +   P+   P    +  L   P        LAP+ R M            + F + 
Sbjct: 374 RRGGERFKPAANQPTRTLKHLLQQSP--------LAPWEREM----------LPMLFLED 415

Query: 416 FIPRLPFF 423
            +  +P F
Sbjct: 416 QLIAVPHF 423


>gi|84624777|ref|YP_452149.1| cell cycle protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368717|dbj|BAE69875.1| cell cycle protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 434

 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 134/355 (37%), Gaps = 19/355 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    
Sbjct: 12  IPPGPVLLAYSGGMDSSALLQLLAATPRYRQAG---LRALHVHHGLHADADAWAAHCQRS 68

Query: 77  CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C  L++   +V  +  +    GL AAAR AR+   +          +  AH  DDQ ET 
Sbjct: 69  CDALQVPLQIVRVQVERDSGLGLEAAARNARHIAFAHTLAA--GEWLTLAHHRDDQAETF 126

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +R+ R   ++G+             +  + RP L   R D+ ++ L + + W EDPSN 
Sbjct: 127 LLRALRASGQEGLAAM---RPQRPFADGTLWRPLLAHSRADLLAYALAQEVRWIEDPSNA 183

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAI 252
           D R +R  +R  V  +                    +A A+L+ + + +      +  A+
Sbjct: 184 DPRHDRNFLRSQVLPLLQQRWPQAADALARSAQLSADASALLLQQDMALLPSVCTASGAL 243

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVID 310
               L          L  +         LP     ++ER +    + ++ C +  +V + 
Sbjct: 244 DLHALRAQPIERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVR 303

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
           R    L++ R     PT     +    WDG    Q    + +++   +  +   P
Sbjct: 304 RWRQRLFLHRPAAAWPT-----DWQAAWDGAAPLQLPDGAQLRLLGATGLRFAQP 353


>gi|262044741|ref|ZP_06017788.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037891|gb|EEW39115.1| tRNA(Ile)-lysidine synthetase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 259

 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 14/247 (5%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +L     +LVA SGG DS  LL  L  +        +   A+ V H L   A D V +
Sbjct: 10  AHTLHPHRQLLVAFSGGLDSTVLLHQLVLLREQ--DPSLTLRAVHVHHGLSVHADDWVVH 67

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C + ++   V     ++   G+ A AR ARY    +        +++TA   DDQ 
Sbjct: 68  CRQICQQWQVPLVVHHVTLARGGLGVEAHARAARYQAFQDTLNA--GEMLVTAQHQDDQC 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +  +R       GLS M  +  +  +  + RP L   RE +R + L   +SW ED 
Sbjct: 126 ETLLLALKRGSGP--TGLSAMAPSSAFAGS-RLLRPLLNETRESLRQWALAHQLSWIEDE 182

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSI 249
           SN DD ++R  +R  V    +  L  +   F +   +  +  A    L+ + L   + S+
Sbjct: 183 SNQDDTYDRNFLRLRV----IPVLRERWPHFSEAVARSASLCAEQEQLLDEMLAAELASL 238

Query: 250 IAISQDI 256
           +A    +
Sbjct: 239 VAEDGSL 245


>gi|254460357|ref|ZP_05073773.1| tRNA(Ile)-lysidine synthetase [Rhodobacterales bacterium HTCC2083]
 gi|206676946|gb|EDZ41433.1| tRNA(Ile)-lysidine synthetase [Rhodobacteraceae bacterium HTCC2083]
          Length = 389

 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 152/395 (38%), Gaps = 34/395 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A + +A+SGGSDS  LL+          FG     AI++DH LR  A+ E R  + 
Sbjct: 7   LHSDAPLGIALSGGSDSTALLVLAVDA-----FGAENLQAITIDHGLRAAAQAEARQAAK 61

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--NATLIMTAHTFDDQLE 133
           +C+ L + H++ +    K    L A AR ARY  + + A+    +   I   HT DD  E
Sbjct: 62  LCASLGVPHTIRTL-ALKDGPDLQARARNARYMALGDWARAQLNSIPAIALGHTKDDVSE 120

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  MR  R     G+              +   RP L   R ++ + L +R I+W EDPS
Sbjct: 121 TFLMRLARGSGVDGLATM---PEYFERAGMVFKRPLLAASRAELHAMLTKRGITWSEDPS 177

Query: 194 NTDDRFERVRVRRFVRDID-----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           N D RF RV++R+    +D        L       +     + NA    I  +       
Sbjct: 178 NQDPRFTRVKMRQAQATLDTLDLTSDRLSQTADWMRAASEVLENAADNWITTHAYTEYGD 237

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
           ++   Q +        F +L  + +   G    P + ++  ++           ++   +
Sbjct: 238 VVLDLQALRTAPKETAFRVLTRALSTLSGNPYRPRFSALSELLH-----SEVARTLQGCL 292

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGI 368
           I R    L +TR V  +  +  Y          +Q         +I P          G 
Sbjct: 293 IYRYKGTLRLTREVNAIENIEHY----------WQIDGPLAPSHRITPLGENGLKQCDGW 342

Query: 369 P--PIIAQRALSSMPSKE-GGKPLLAPFSRFMTKF 400
               ++ +R+L S P+    G  + AP +R    +
Sbjct: 343 RNTALLPRRSLLSTPAIWLDGVLMAAPIARPDPNW 377


>gi|300909077|ref|ZP_07126540.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus reuteri SD2112]
 gi|300894484|gb|EFK87842.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus reuteri SD2112]
          Length = 464

 Score =  208 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 133/308 (43%), Gaps = 23/308 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +   RFF         ++VAVS G DSM LL  L  + S     + +     ++H 
Sbjct: 8   FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLPSK---YRPQIIVAHMNHE 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR+ ++ E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    E  K   A+
Sbjct: 61  LRKQSELEERFIRQYCKQNDLKLAVAHWPQDLHPQTGVENAARQARYQFFREVMKDNQAS 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  +D  ET+ M+  R        L G+ D   +     + RP L   ++ ++ +
Sbjct: 121 ILLTAHHQNDLAETMLMKMARGGQL--SQLVGIRDWRPFASG-TLIRPLLPFSKQQLKKY 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233
            LQ ++ W ED +N D   +R R R  +  +        +   +    ++       +  
Sbjct: 178 ALQHHLKWYEDKTNKDLSIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLAWRDQE 237

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           VA  +   +    R I+A    +L     +   +LR      G  I     + ++ ++  
Sbjct: 238 VADQLAACVDQQGRMILA---RLLQNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLQI 292

Query: 294 LKSGKRGC 301
           L++ ++  
Sbjct: 293 LENEQKPQ 300


>gi|307609584|emb|CBW99086.1| hypothetical protein LPW_08711 [Legionella pneumophila 130b]
          Length = 400

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 119/304 (39%), Gaps = 17/304 (5%)

Query: 38  ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG 97
            LH + S       +  A+ ++H +   + +  R+   +C  L IA  +           
Sbjct: 2   LLHVLASTPPLSN-QLLAVHINHGISGNSLNWQRHCEQLCLDLGIAF-IAKAIEFDRSAN 59

Query: 98  LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
           +  AAR ARY   S   +  +   ++  H  DDQ ETV ++  R     G+     C  +
Sbjct: 60  VEEAARNARYDFFSSLLEDNDC--LVLGHHLDDQAETVLLQLFRGAGVDGLAAMQECSNL 117

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217
                  ++RPFL C R ++  +     + W ED SN D ++ R  +R  V  + L    
Sbjct: 118 ---GAGQLARPFLTCPRVELEHYARIHELKWIEDESNQDTKYSRNYLRHRVMPLLLEKWP 174

Query: 218 LKMKKFQDLRVKVNNAVAML----IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273
                          A A L    I     +   +   + + I  ++   +  +L+    
Sbjct: 175 GVAGNISRAATHCQQAKANLEVLAIKDCPDLLNATDHLLIEPIKGLEFERITNVLKFW-- 232

Query: 274 ICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTLI 329
           +   +I LP  ++  R+   ++F K      VS  ++ + R    L++ +A + NLP  I
Sbjct: 233 LKKNRIQLPSSKTFHRIIHEIIFAKLDAMPTVSWDQIQVRRFQQHLYLLKADQINLPKAI 292

Query: 330 LYPE 333
            + +
Sbjct: 293 KWQQ 296


>gi|56552554|ref|YP_163393.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241762204|ref|ZP_04760286.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|61217187|sp|Q5NLX8|TILS_ZYMMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56544128|gb|AAV90282.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241373251|gb|EER62870.1| tRNA(Ile)-lysidine synthetase [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 329

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 22/308 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             + +AVSGGSDS+ LL+         +       A++VDH +R  A +E R+V+ +C +
Sbjct: 30  GKLGIAVSGGSDSLALLLL-------GAVSDFPVEAVTVDHGMRPEAAEEARFVAQICQQ 82

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + + H +++ K      G+ AAAR  RYAL++E AK  N   +MTAH  DDQ ET  MR+
Sbjct: 83  IGVPHQILTTKIEANGEGMQAAARIRRYALMAEWAKEKNVGALMTAHHADDQAETFLMRA 142

Query: 140 QRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            R     G+        I  +   L + RP L   R  +   + +   ++  DPSN +  
Sbjct: 143 ARGSGLNGLAAIRPDVVITAEGQKLRLLRPLLGFTRSALAEIVEKAGFTFVSDPSNDNPH 202

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           ++R   RR ++     A     ++      +        I         + I    ++L 
Sbjct: 203 YDRTHFRRLLK-----ASPWINRQHIAEAARYCQQSEEAIEWITAKEAAARIRKKGEVLY 257

Query: 259 IDS-----TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           +D       +L  L+  +     G  +L    ++ R +  L+ GK+  ++    VI +  
Sbjct: 258 LDPTELPIEILRRLVLRAMETITGNTAL-RGSALSRFIRSLQQGKKVMLA---DVIGQGG 313

Query: 314 NFLWITRA 321
            +    RA
Sbjct: 314 EYWRFYRA 321


>gi|90416187|ref|ZP_01224119.1| mesJ protein [marine gamma proteobacterium HTCC2207]
 gi|90331912|gb|EAS47126.1| mesJ protein [marine gamma proteobacterium HTCC2207]
          Length = 458

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 68/321 (21%), Positives = 119/321 (37%), Gaps = 27/321 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
              L     ILV  SGG DS          L        + +A+ + H L   A D  ++
Sbjct: 27  FDQLEAAPQILVGFSGGLDSTV-----LLHLLCELLPPERITAVHIHHGLSANADDWQQH 81

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              +C  L +     S   +K   GL +AAR+ARY +  EH       L++  H  DDQ+
Sbjct: 82  AKTLCHSLGVRLISESVVVNKTGAGLESAARDARYKVFEEHLIEDG--LLLLGHHADDQV 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV  R  R    +G  LSG+  T        + RP L   +  ++++   + + W ED 
Sbjct: 140 ETVLFRLLRGSGARG--LSGIPQTRAVGAG-HLIRPLLNQPKSRLQAYAEAQQLVWIEDE 196

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAVAMLIPKYLTVHMRSII 250
           SN  ++F+R  +R  V    +  L  +   +    +R    +  A  +   +      ++
Sbjct: 197 SNQQEQFDRNYLRNSV----IPTLAERWPDYVQGVMRSAEQSGQADQLADSVARADLGLL 252

Query: 251 AISQD----------ILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKR 299
               +           + ++      LLR    + G       +   +   +L  +    
Sbjct: 253 DPRPERGGWSLDLNQFIALEPLRQKNLLRYWPEVQGMPPLGQTFIDEVMYSLLTAREDSE 312

Query: 300 GCVSIGRVVIDRRANFLWITR 320
             V    + + R    L++ R
Sbjct: 313 PKVVRADLQLCRYRQRLYLLR 333


>gi|325681847|ref|ZP_08161366.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus reuteri MM4-1A]
 gi|324978938|gb|EGC15886.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus reuteri MM4-1A]
          Length = 470

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 133/309 (43%), Gaps = 25/309 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +   RFF         ++VAVS G DSM LL  L  + S     + +     ++H 
Sbjct: 14  FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHE 66

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR+ ++ E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    +  K   A+
Sbjct: 67  LRKQSQLEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRAS 126

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  +D  ET+ M+  R        L G+ D   +     + RP L   ++ ++ +
Sbjct: 127 ILLTAHHQNDLAETMLMKMTRGGQL--SQLVGIRDRRPFASG-TLIRPLLPFSKQQLKKY 183

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233
            LQ ++ W ED +N D   +R R R  +  +        +   +    ++       +  
Sbjct: 184 ALQHHLKWYEDKTNKDLNIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLTWRDQE 243

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML 292
           VA  +        R I+A     L  +  ++   +LR      G  I     + ++ ++ 
Sbjct: 244 VADQLAACFDQQGRMILA----SLAKNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLE 297

Query: 293 FLKSGKRGC 301
            L++ ++  
Sbjct: 298 ALENEQKPQ 306


>gi|269469148|gb|EEZ80693.1| tRNA(Ile)-lysidine synthetase [uncultured SUP05 cluster bacterium]
          Length = 391

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 130/310 (41%), Gaps = 22/310 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +   +I++A+SGG DS+ LL  L++  S +        A+  +H L +   +   +  ++
Sbjct: 11  LKDKNIVLALSGGIDSVVLLHYLNTHFSGK------LRAVHCNHHLSKHCSEWDEFCKNL 64

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C  L I +  +     K  + L   AR+ RY  +S + +     ++ TAH  +DQ ET+ 
Sbjct: 65  CQSLSIDYLNIDIFI-KNDSNLEENARKKRYHSLSCNLEEN--EVLCTAHHQNDQAETLL 121

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R     G+       T+   ++    RP L   +  I  +  +  + W ED SN +
Sbjct: 122 LQLFRGSGVAGLASMPKEKTLGKGIHY---RPMLSLNKTQIIDYAKKYKLRWIEDDSNKN 178

Query: 197 DRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
             F R  +R  +         +L     +  K Q   +K+   +A +  K   +   S  
Sbjct: 179 TDFRRNFLRLDILPKLESVYQNLTKTLFRSAKHQSEALKLTRELADIDIKENNIVSDSGR 238

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVV 308
             + +++ +    +  ++R   ++ G     P  + M++++  L++    +  V  G+  
Sbjct: 239 INTLELIKLGPHRVKNIIRHHLSLIG--FLAPSDKIMDQIIDLLRAKIDAKPLVGWGQYE 296

Query: 309 IDRRANFLWI 318
           I R    L+ 
Sbjct: 297 IRRYQGELYF 306


>gi|127513547|ref|YP_001094744.1| tRNA(Ile)-lysidine synthetase [Shewanella loihica PV-4]
 gi|126638842|gb|ABO24485.1| tRNA(Ile)-lysidine synthetase [Shewanella loihica PV-4]
          Length = 474

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/330 (23%), Positives = 127/330 (38%), Gaps = 23/330 (6%)

Query: 3   LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           + P   +    R    PA  +++A SGG DS  L   L   L  +   +  +  + V H 
Sbjct: 19  VKPAAGINSGSRPATKPAMKLVLAYSGGVDSEVLAHGLS--LFAKQHPEFNYLLVHVHHG 76

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINAT 120
           L   A     +         +  SV     +   +  L AAAREARY  +    +     
Sbjct: 77  LSANADSWQSHCERRAREYGLPISVKRVTVASGARISLEAAAREARYDALRS--ELAPGD 134

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQLET+ +  +R    KG+   G       D    + RP L   R  I +F
Sbjct: 135 ILLTAHHQDDQLETLLLALKRGLGPKGLAAMGEVQAFTPDN--PLLRPLLTSSRAQIEAF 192

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            +   +S  ED SN D RF+R  +R  V  I L A +           ++      LI +
Sbjct: 193 AMAEGLSHIEDESNKDSRFDRNFLRNEVLPI-LTARWPAFAATASRSAQLCAEQQALIDE 251

Query: 241 YLTV----------HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
            +++          H ++ +   + +         +LLR      G    LP    +  +
Sbjct: 252 EVSLCLPAMLLSVPHSQAAVLDLKALAEQPGRWRPHLLRGFIEHRG--FPLPSAAQLGDI 309

Query: 291 MLFL--KSGKRGCVSIGRVVIDRRANFLWI 318
           +  L  K   +  + I  +V+ R    L++
Sbjct: 310 LAQLEAKDDAQVAIRIRSMVLRRFQYALYL 339


>gi|313611247|gb|EFR86027.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL F2-208]
          Length = 271

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 95/236 (40%), Gaps = 13/236 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K       ++H LRE A +E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSDLVQKEAIYVAHLNHHLRENAANEQNVVETFC 76

Query: 78  SRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   +       +    Q G+   AR  RY    +     N   +  AH  DDQ+E
Sbjct: 77  ERHGIPLYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I ++  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           N    + R R R  +      +  A+Y   ++F +   +    +  L    L  ++
Sbjct: 194 NASQEYTRNRYRAQLLPFLKQENPAVYAHFERFSEETSEDFRFLEALASDLLNKNL 249


>gi|312959409|ref|ZP_07773926.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6]
 gi|311286126|gb|EFQ64690.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens WH6]
          Length = 439

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 106/305 (34%), Gaps = 18/305 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L S+    +      SA+ + H L+  A     +   VC  L + 
Sbjct: 24  VAFSGGLDSTVLLHLLASLAKTETLPP--LSAVHIHHGLQAAADAWPGHCQSVCDGLGVP 81

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  +  +P      AAR+ARY   +E   T    +++T    DDQ ET+  R  R  
Sbjct: 82  LRVMRVQV-QPGASPERAARDARYQAFTEV--TGAGEVLLTGQHRDDQAETLLFRLLRGA 138

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R  + ++     + W EDPSN D RF R  
Sbjct: 139 GVRGLAAMPAHRRLA---GGHLVRPLLDVSRVALENYADAHQLQWIEDPSNADPRFSRNY 195

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V           +         ++ A  +L          +        L + S  
Sbjct: 196 LRHRVFPTLTERWPQAVSNLARAVEHLDEAQGLLDELACMDLKTADQPSPFPWLPLPSLA 255

Query: 264 LFYLLRVSAAICGGQI--------SLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  L  +S A     +         LP        R +   K   +    +    + R  
Sbjct: 256 LTPLRELSDARQRNALRHWLTPLTRLPDSDHWASWRSLRDAKGDAQPVWCLADGELHRCG 315

Query: 314 NFLWI 318
             LW 
Sbjct: 316 GRLWW 320


>gi|225849409|ref|YP_002729573.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643627|gb|ACN98677.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 454

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 126/324 (38%), Gaps = 23/324 (7%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++V+ F  SL+ P   IL+A SGG DS+ L   L    +     KI      ++H L
Sbjct: 5   KFLKAVKDF--SLIQPKDKILIAFSGGPDSVVLSFLLKKFQAYFKIEKISL--AHLNHSL 60

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
           RE +  +  +  D   +  I   V          K +  +  A RE RY    E  +  N
Sbjct: 61  REESDKDEEFCKDFGQKYDIPVFVKKVDVKSVAKKEKKSIEEAGREERYKFFKEIMEKEN 120

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              + TAH   D +ET+++   +   +   G     +         I RP    ++E++ 
Sbjct: 121 FNKLATAHHLSDLIETMFLWFVQGNKKGLKGFKPNEEN--------IIRPLYYIKKEELL 172

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVA 235
            +  + ++S+  D SN D R+ R +VR  +  I     H+L   + +    +    + + 
Sbjct: 173 EYCHKNDLSYVIDKSNFDKRYLRNKVRLDLIPIAKEINHSLEESLLRLSFFQSVDEDFLE 232

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
           +     L             +  +   + + ++  +  I       P Y+ M  ++  LK
Sbjct: 233 IYSKDILKSLQEKDYIDLNYLNTLHEAVKYRVI--TNWIYEKTRIYPSYQKMLNILKLLK 290

Query: 296 SGKRGCVSIG-RVVIDRRANFLWI 318
            G    + +   + + +  + L++
Sbjct: 291 MGGTKALHLQENLQLIKEYDKLYL 314


>gi|184152910|ref|YP_001841251.1| cell cycle protein [Lactobacillus reuteri JCM 1112]
 gi|183224254|dbj|BAG24771.1| cell cycle protein [Lactobacillus reuteri JCM 1112]
          Length = 477

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 133/309 (43%), Gaps = 25/309 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +   RFF         ++VAVS G DSM LL  L  + S     + +     ++H 
Sbjct: 21  FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHE 73

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR+ ++ E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    +  K   A+
Sbjct: 74  LRKQSQLEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRAS 133

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  +D  ET+ M+  R        L G+ D   +     + RP L   ++ ++ +
Sbjct: 134 ILLTAHHQNDLAETMLMKMTRGGQL--SQLVGIRDRRPFASG-TLIRPLLPFSKQQLKKY 190

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233
            LQ ++ W ED +N D   +R R R  +  +        +   +    ++       +  
Sbjct: 191 ALQHHLKWYEDKTNKDLNIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLTWRDQE 250

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML 292
           VA  +        R I+A     L  +  ++   +LR      G  I     + ++ ++ 
Sbjct: 251 VADQLAACFDQQGRMILA----SLAKNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLE 304

Query: 293 FLKSGKRGC 301
            L++ ++  
Sbjct: 305 ALENEQKPQ 313


>gi|319901663|ref|YP_004161391.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108]
 gi|319416694|gb|ADV43805.1| tRNA(Ile)-lysidine synthetase [Bacteroides helcogenes P 36-108]
          Length = 423

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 133/395 (33%), Gaps = 61/395 (15%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +  I       +       ILVA+SGG+DS+       ++L           A   + 
Sbjct: 1   MNMQKITQFINRNKLFSQKDKILVALSGGADSV-------ALLRLLLALGYTCEAAHCNF 53

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAK 115
            LR   +  +  +V ++C  L+I   ++ +    +  K    +  AAR  RY    +  K
Sbjct: 54  HLRGTESDRDETFVRNLCKTLQIPLYIIHFSTEKEAKKRHVSIEMAARTLRYEWFEKMRK 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A +I  AH  DD +ET+ +   R     G+         +  +N  I RP L   R+
Sbjct: 114 ECDAGVIAIAHHQDDSVETLLLNLIRGTGINGL-------QGIRPINGKIVRPLLCLGRK 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228
           +I  +L      +  D +N  D + R ++R       + +      ++        D+ +
Sbjct: 167 EIIEYLESIGQEYVTDSTNFQDEYTRNKIRLNLLPMMQEINPSIKESILRTAGYLNDVSI 226

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RS 286
             N  +       LT     I  + Q+      TLLF +L              G+    
Sbjct: 227 IYNKGIEEAKRHILTEKGIDINLLLQEP--APETLLFEIL-----------YPLGFNTSQ 273

Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLWI------------TRAVRNLPTLILYPEE 334
           ++ +   L S      +     I +    L I             R     P  I+  ++
Sbjct: 274 IKDIYQALDSQSGKIFTSAEWRIAKDRKLLLIQSKQEPHKPILEMREYNYTPEFIIPQDK 333

Query: 335 TTVWDGRYQFQNL--------SDSLIQIGPQSYRK 361
            T      +  N          DS I  G    +K
Sbjct: 334 KTACFDADKISNPLSLRLWKQGDSFIPFGMTGRKK 368


>gi|229824541|ref|ZP_04450610.1| hypothetical protein GCWU000282_01885 [Catonella morbi ATCC 51271]
 gi|229785912|gb|EEP22026.1| hypothetical protein GCWU000282_01885 [Catonella morbi ATCC 51271]
          Length = 487

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 55/235 (23%), Positives = 111/235 (47%), Gaps = 7/235 (2%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++AVSGG DSM +L  ++ +   R +  ++      +H LR  + +E   + ++ +   
Sbjct: 24  VVLAVSGGVDSMVMLRLMNELNQLRQYNHLQLVVAHFNHKLRPESDNEAVAIKEIVAEYG 83

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             +    W      T + A AR+ARY   +E  +T  A ++MTAH  +D  ET  MR  R
Sbjct: 84  CIYFATEW-GEPAATNVEAQARDARYQFFAEVIRTTEADVLMTAHHLNDVAETFLMRMTR 142

Query: 142 DYAEKGM-GLSGMCDTILYDLNLW-----ISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             + +G+ G+ G    ++ D +       I RPF+   + ++ ++  + N+++ ED SN 
Sbjct: 143 GTSIRGLQGIRGCYQRLMSDPSGHTVMPTIIRPFIGVTKAELEAYAEKFNVTYFEDASNY 202

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
            D F R R R       +      ++    ++ ++ ++  +    YL +  + ++
Sbjct: 203 MDHFVRNRFRHTYIPQLMQENPQLLQNLLTIQQQIQDSYTVQYADYLDLEPQLLM 257


>gi|196250781|ref|ZP_03149468.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16]
 gi|196209731|gb|EDY04503.1| tRNA(Ile)-lysidine synthetase [Geobacillus sp. G11MC16]
          Length = 464

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 17/249 (6%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR F+   R L   A ++V VSGG D    L  LH + S R   K++  A  VDH  
Sbjct: 2   VDKVRAFIDRHRLLTEGATVIVGVSGGPD---SLALLHLLSSLRDEWKLQLVAAHVDHMF 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTI 117
           R   +++E+ +V   C+  RI    V         +   G   AAR  RY   +E  K  
Sbjct: 59  RGRESEEEMEFVKHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKY 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    KG   +G+     +  + ++ RPFL   R +I
Sbjct: 119 QAQYVALGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFHGS-YLIRPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234
             +  +  ++   DPSN  D + R R R  +  +   +   L+ + +++ ++  +    +
Sbjct: 176 EDYCKKEGLTPRRDPSNEKDDYTRNRFRHHIVPLLKQENPRLHERFQQYSEMMAEDEQFL 235

Query: 235 AMLIPKYLT 243
             L    L 
Sbjct: 236 EELATDALN 244


>gi|312173368|emb|CBX81622.1| cell cycle protein [Erwinia amylovora ATCC BAA-2158]
          Length = 433

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/357 (22%), Positives = 143/357 (40%), Gaps = 24/357 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++     +L     +L+A SGG DS  LL  L  +   R   +++  A+ + H L   
Sbjct: 1   MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQR--PQLQLRAVHIHHGLSPL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A   V +    C R R+   VV  +    + G+ AAAR+ARY  + +         ++TA
Sbjct: 59  ADGWVAHCQQQCDRWRVPLVVVRVQVDALEGGIEAAARQARYQALRQQLAA--GETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+        +    +    RP L   R+ + S+  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQQQLL---GDHRHLRPLLAQSRQQLESWAQRYQ 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I W ED SN D R++R  +R  V  + L+  +           ++      L+ + L   
Sbjct: 174 IGWIEDDSNQDPRYDRNFLRLQVMPL-LNQRWPHFASAVARSAQLCGEQERLLDELLAES 232

Query: 246 MRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSG 297
           + +++  S       +L +       LLR    I     S+P   +++R+ L     ++ 
Sbjct: 233 LDALVDESGALCFTPLLTMSDARRSALLRRW--IARQHGSMPSRAALQRIWLEVACSRAD 290

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
              C+ +G   + R  + L+       LP  +        W   +Q   L D L Q+
Sbjct: 291 AEPCLRMGSREVRRFRDRLYW------LPQRLPLGASQLAWPAPWQPLTLPDGLGQL 341


>gi|167629385|ref|YP_001679884.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
 gi|167592125|gb|ABZ83873.1| tRNA(ile)-lysidine synthase [Heliobacterium modesticaldum Ice1]
          Length = 463

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/402 (22%), Positives = 150/402 (37%), Gaps = 45/402 (11%)

Query: 10  RFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           R     L+ P   +L+AVSGG DS+ LL+  H          +K S    +H LR  A D
Sbjct: 8   RLHRHRLIEPQQRVLIAVSGGIDSVSLLLLFHQAAPQM---DLKLSVAHYNHGLRGEAAD 64

Query: 69  E-VRYVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           E   +V+ +  RL +          W   +P T +  AAR  RY  +   AK   A  I 
Sbjct: 65  EDEAFVAALAGRLGLPCYRERAPQGWWTREPGTKME-AARRLRYDFLERVAKAAGADRIA 123

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DDQ+ETV     R    +G+    +             RP L  RR ++ +FL  
Sbjct: 124 LGHHADDQVETVLFHFLRGSGLRGLAGMPI-------RRGPYIRPLLAFRRAELAAFLQA 176

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
               W  D SN    + R R+R  +  +    L+    +F +   +++            
Sbjct: 177 ERQEWRHDASNDSTLYTRNRIRHELIPL----LHDYNPRFAEAIGRMSRLCLDDADYLDE 232

Query: 244 VHMRSIIAISQD-------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-- 294
           V  R +  ++ +       +  +   +   +LR          ++PG+   E ++  L  
Sbjct: 233 VADRELARLTNEEGLDAKGLEALPRAIGRRVLRRFIEAAA---AMPGFEKTEAMLQRLTE 289

Query: 295 ---KSGKRGCVSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDGRYQFQNLS 348
              KSG    VS   +V +     L+     +        +  P E     GR+Q   + 
Sbjct: 290 RGGKSGPVDQVSGHTLVSEAGRLRLYKDLPWKGDGGFYRPLPEPGEP----GRWQSVAVP 345

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL 390
           ++  ++    + + D    + P   +R +   PS     PL+
Sbjct: 346 EAGGRMRIARWDRIDDRDPLEPG--EREICLKPSVAALGPLV 385


>gi|182420057|ref|ZP_02951291.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum 5521]
 gi|237669480|ref|ZP_04529460.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376094|gb|EDT73681.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum 5521]
 gi|237654924|gb|EEP52484.1| tRNA(Ile)-lysidine synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 464

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 123/304 (40%), Gaps = 24/304 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76
               +LVA+SGG DS+ LL  L+++ ++ +   I+  A  ++H LR+  A ++  YV  +
Sbjct: 17  SGDKVLVALSGGPDSVCLLNILYNLKAELN---IEIGAAHLNHLLRDKDAFEDEEYVKIL 73

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C  L I   V     +K     +     A R+ARY    +  K    T I TAH  +DQ 
Sbjct: 74  CKSLDIPCFVKRVDINKCSKDKKMSSEMAGRDARYNFFDDIVKDKGYTKIATAHNANDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+  R  R    +G  L G+           I RP L   R+++  ++   N+    D 
Sbjct: 134 ETILFRLMRGSGIEG--LCGIKVRR-----DKIIRPILCLSRKEVEEYIEINNLKPRIDK 186

Query: 193 SNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTV 244
           +N +  + R ++R     ++++     +   + +   L  K    + N+      K+   
Sbjct: 187 TNFEKIYNRNKIRLDMIPYIKENFNEDIIQTLNRMSVLLQKDNEFIENSARSFYEKHCIE 246

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                I I +++ +    ++  ++R +             + +  +    K+     + +
Sbjct: 247 QSDYFI-IKKEMFDNKEAVVTRVIRYALTNFSKTHYDFEMKHIYEICNLAKNNSGKAIDL 305

Query: 305 GRVV 308
              +
Sbjct: 306 PNKI 309


>gi|224023875|ref|ZP_03642241.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM
           18228]
 gi|224017097|gb|EEF75109.1| hypothetical protein BACCOPRO_00592 [Bacteroides coprophilus DSM
           18228]
          Length = 437

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 134/377 (35%), Gaps = 49/377 (12%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L+    +LVA+SGG+DS+ LL  L  +         +  A   +  LR E +  + R+V 
Sbjct: 16  LLSGERVLVALSGGADSVALLCVLQEL-------GYRLEAAHCNFHLRGEESDRDERFVR 68

Query: 75  DVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +C R +I   V+ +      +  +  +  AARE RY    E        ++  AH  DD
Sbjct: 69  QLCERRQIPLHVIHFSTGAYAASRKISIEMAARELRYRWFEELRDQGGFRVVAVAHHRDD 128

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+ +   R     G+         +  +N  + RP L   RE I ++L +    +  
Sbjct: 129 SVETLLLNLTRGTGINGL-------RGIRPVNGTVVRPLLGVSREAILTYLDRLGQPYVT 181

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D +N +D + R ++R  V    L AL        +   +  + +  +   Y      +  
Sbjct: 182 DSTNLEDAYARNKIRLNV----LPALREINPSVAESIAETASRLDDVAEIYRHAMQEACC 237

Query: 251 AISQDILNIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
            +  D   I    L   +   A +     G+        +  ++  L             
Sbjct: 238 RVCPDGKRISIPALLKEVAPQAVLFELLHGKGFNAS--QIRDILRSLSGESGRLFQGAGW 295

Query: 308 VIDRRANFLWITR---------------AVRNLP------TLILYPEETTVWDGRYQFQN 346
            + R   +L++                  V +LP       +     +   W    +  +
Sbjct: 296 TLLRDRKYLFLRSDAEKSILSVLQERIVPVEDLPVLPREKEVACLDADRITWPLELRVWS 355

Query: 347 LSDSLIQIGPQSYRKAD 363
             D  I +G Q+Y+K  
Sbjct: 356 SGDRFIPLGMQNYKKVR 372


>gi|119897207|ref|YP_932420.1| putative tRNA(Ile)-lysidine synthetase [Azoarcus sp. BH72]
 gi|226695534|sp|A1K3X8|TILS_AZOSB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|119669620|emb|CAL93533.1| putative tRNA(Ile)-lysidine synthetase [Azoarcus sp. BH72]
          Length = 448

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 134/384 (34%), Gaps = 21/384 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + +  A+SGG DS+  L  L  +     F     +A+ V H L   A    ++ + +C+ 
Sbjct: 22  SRLCCALSGGVDSVVTLDLLTRLQPRFGF---TLTAVHVHHGLSPHADAWAQFCARLCAA 78

Query: 80  LRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             +  ++   +       GL +AAR  R+A +           ++  H  DDQ ETV  R
Sbjct: 79  RGLTLAIRRVEVPTDTGQGLESAARARRHAELVAL----PCDWLVFGHHQDDQAETVLFR 134

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +G+G     +   + +   + RP L   R  I ++     + W ED SN D R
Sbjct: 135 LFRGSGLRGLGAMAAVEPGQHAMPGKL-RPLLDIGRAGIVAYARAAGLEWIEDESNADCR 193

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR--SIIAISQDI 256
           F R  +R  V  +                  +     +L              +  +   
Sbjct: 194 FTRNALRHKVLPVVQAQFPAVAPTLARTAALLREGADLLDDLARLDENACGGPVLAADVF 253

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVIDRRANF 315
            ++ +     LLR   A  G +   P    +   +  L+       + +G +        
Sbjct: 254 ASLPAARAANLLRWQTARMGARA--PSRARLGETLRQLREAPGPLRLPLGDLWCCAYQGR 311

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQF---QNLSDSLIQIGPQSYRKADVPSGIP--- 369
           +W+ R         L+  E+++  G  Q    Q    + +++       A    G+    
Sbjct: 312 VWLERDDEAPLRAHLWCGESSLGWGAGQVRLSQGGGGAALRVAAGEAMLAPPAPGLRMRL 371

Query: 370 -PIIAQRALSSMPSKEGGKPLLAP 392
            P    R+  ++  + G  P L P
Sbjct: 372 GPGRPTRSFKNLCQEAGIPPWLRP 395


>gi|148543503|ref|YP_001270873.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri DSM 20016]
 gi|227363652|ref|ZP_03847766.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri MM2-3]
 gi|148530537|gb|ABQ82536.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri DSM 20016]
 gi|227071321|gb|EEI09630.1| tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri MM2-3]
          Length = 464

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 133/309 (43%), Gaps = 25/309 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +   RFF         ++VAVS G DSM LL  L  + S     + +     ++H 
Sbjct: 8   FERHLVRSRFFATQ----DKVVVAVSTGVDSMVLLDLLQHLSSK---NRPQIIVAHMNHE 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR+ ++ E R++   C +  +  +V  W ++  PQTG+  AAR+ARY    +  K   A+
Sbjct: 61  LRKQSQLEERFIRQYCKQNDLKLAVTHWPQDLHPQTGIENAARQARYQFFRKVMKDNRAS 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  +D  ET+ M+  R        L G+ D   +     + RP L   ++ ++ +
Sbjct: 121 ILLTAHHQNDLAETMLMKMTRGGQL--SQLVGIRDRRPFASG-TLIRPLLPFSKQQLKKY 177

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-------NNA 233
            LQ ++ W ED +N D   +R R R  +  +        +   +    ++       +  
Sbjct: 178 ALQHHLKWYEDKTNKDLNIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLTWRDQE 237

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML 292
           VA  +        R I+A     L  +  ++   +LR      G  I     + ++ ++ 
Sbjct: 238 VADQLAACFDQQGRMILA----SLAKNKEIIRKEILRQWFNQQG--IYDIKDQQLDELLE 291

Query: 293 FLKSGKRGC 301
            L++ ++  
Sbjct: 292 ALENEQKPQ 300


>gi|222622571|gb|EEE56703.1| hypothetical protein OsJ_06178 [Oryza sativa Japonica Group]
          Length = 693

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 126/327 (38%), Gaps = 40/327 (12%)

Query: 10  RFFVRSLV-----YPAHILVAVSGGSDSMGLLIALHSV--------LSDRSFGKIK---- 52
           R F R +          + V VSGG DSM L +   +           D   G +     
Sbjct: 54  RAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGVSGFVD 113

Query: 53  -FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYA 108
               + VDH LR  + DE + V D    + +   +    W N +P+ G +  AARE RY 
Sbjct: 114 GLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAREMRYQ 173

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------- 161
            + +        +++ AH  DDQ E   +R  R+    G+  +     +           
Sbjct: 174 KLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDN 233

Query: 162 ----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH--- 214
                + + RP L   ++D+       N  W EDP+N    + R R+R  +R + +    
Sbjct: 234 FSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGTF 293

Query: 215 --ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL---NIDSTLLFYLLR 269
              L+  +   +  R  ++NA +M++ K LT+       I  + L   N+D   L   L 
Sbjct: 294 QSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFLSRYLA 353

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKS 296
                   +      RS + ++ ++++
Sbjct: 354 YVLQFVSQRHRPLRGRSAQLLIDYIRT 380


>gi|87307758|ref|ZP_01089901.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645]
 gi|87289372|gb|EAQ81263.1| cell cycle protein mesJ-like [Blastopirellula marina DSM 3645]
          Length = 328

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 137/311 (44%), Gaps = 20/311 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVSGG+DS+ LL +L ++   R  G  +  A+ VDH LR+ +  + ++V+ +  +L 
Sbjct: 22  VMVAVSGGADSVALLRSLAAI---RESGPGRLIAVHVDHNLRKESDTDAQFVAQLAQQLG 78

Query: 82  IA--HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           I      V ++ S P  G+ AAAR ARY  +   A    A  ++TAHT DDQ+ETV  R 
Sbjct: 79  IEGILGRVDFELSGPD-GIEAAARSARYGFLRTFAMDHGARYVVTAHTADDQIETVLHRI 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R  +    GLSG+      +L + + RP L  RR ++ ++L     ++  D +N + RF
Sbjct: 138 LRGTSL--AGLSGIPRARELELGISLLRPMLSIRRSEVEAYLADLGQTFRHDETNDESRF 195

Query: 200 ERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            R R+R  +  +   A   ++ +          + R  V    + L+   L       + 
Sbjct: 196 FRNRLRNDLLPLLRDAYLPQVDQSLLRLAIGAAECREYVETQASQLLDVCLMRETDESVT 255

Query: 252 ISQDILNIDSTLLF--YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-GRVV 308
           +    L      L     + +       + S+      E +   +         + G + 
Sbjct: 256 LDAKKLGTAPPFLAKEACVLLWKQHAWPRQSM-SREKWEALWTLITGDSPAPFELPGGIR 314

Query: 309 IDRRANFLWIT 319
            +++   L +T
Sbjct: 315 AEKKGEQLTLT 325


>gi|301118040|ref|XP_002906748.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262108097|gb|EEY66149.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 740

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 141/375 (37%), Gaps = 56/375 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I VAVSGG+DSM L++ L   L      K    A++VDH LR  +  E   V+ +C+  
Sbjct: 13  PIAVAVSGGADSMALMLLLREYLHGNRI-KTPLLAVTVDHQLRIGSSREALEVAKICAER 71

Query: 81  R-IAHS--VVSWKNSKPQTG-------------------LMAAAREARYALISEHAKTIN 118
             I H   V  W     +                     +   AR+ RY L+        
Sbjct: 72  GGITHVTKVCEWHLGDTEKHSGGEQQSDLLRPVKPRDSKIEEQARQYRYNLLRRVCLEYG 131

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMG----------LSGMCDTILYDLNL----- 163
              +  AH   DQLET   R  R     G+           L G+ D   +   L     
Sbjct: 132 VRCLFVAHNLGDQLETTLFRLGRASGINGLAGIANQLPFLSLEGLPDRSFHGKGLDSDYS 191

Query: 164 -WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
             + RP L   ++++ +   +   +W  DPSN D  ++RVR+R+ ++ +        +  
Sbjct: 192 ATLLRPLLSVTKDELMATCDRFQQTWIHDPSNDDLMYDRVRIRQELKRVKREQGAEVLDL 251

Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL----------NIDSTLLFYLLRVSA 272
           F   +V  + A          +  +  +    D++          N+   LL+ LL +  
Sbjct: 252 FARFQVSSDKAKKEFALIERAMLRKYTVTWGPDLVVLRLAVFHDPNMFEELLYRLLSIII 311

Query: 273 AICGGQISLPGYRSMERVMLFLKSGKRG-CVSIGRVVID--RRANFLWITRA-VRNLPTL 328
              G + + P   S+ R++  L+  + G  +++G   I+   + + L I    V  +P  
Sbjct: 312 VHIGTKETPPRLASVVRLVRDLQRLESGKQITLGGCRIECILKGHQLAIQPEQVAPVPGF 371

Query: 329 ---ILYPEETTVWDG 340
              ++ P     W  
Sbjct: 372 FGHVVKPGHPLKWPN 386


>gi|292492700|ref|YP_003528139.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus halophilus Nc4]
 gi|291581295|gb|ADE15752.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus halophilus Nc4]
          Length = 442

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 125/337 (37%), Gaps = 15/337 (4%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  F+R L +     VA SGG DS  LL +L  +        I  SA  VDH L   +
Sbjct: 6   DRLLEFLRQLHFCHGYRVAYSGGLDSQVLLYSLVQLRPQ--LPGIALSAFHVDHGLSSRS 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               ++  + CS L +   V+   N++P  G    A        +   +      ++T  
Sbjct: 64  GQWSQHCRETCSELGVGCEVIKV-NARPAKGESPEAAAREARYAALRTRVEKGECLLTGQ 122

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ETV ++  R     G  L+ M   + +   L + RP L   R +++++  Q  +
Sbjct: 123 HQDDQAETVLLQLLRGAGPHG--LAAMARVMPFGEGL-LLRPLLPFSRAELKAYAEQEGL 179

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV----AMLIPKYL 242
            W EDPSN D  F+R  +R  V  +         +          +A          + +
Sbjct: 180 VWIEDPSNFDVGFDRNYLRHHVLPLLRQRWPGLGRTLSRAAGHQADAAWILDHQAQQELI 239

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKR 299
           TV         Q +  +       LLR      G  + LP    ++R++   L      +
Sbjct: 240 TVSDGEPGLSVQGLQGLAPPQRRNLLRHWFKREG--LPLPDSAHLQRILEEVLPASEDAQ 297

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
             V+     + R  N L+  + +      ++   E  
Sbjct: 298 PLVAWPGAEVRRYRNRLYTQKPLSPHEATMVLAWEGV 334


>gi|192362306|ref|YP_001981512.1| mesJ protein [Cellvibrio japonicus Ueda107]
 gi|190688471|gb|ACE86149.1| mesJ protein [Cellvibrio japonicus Ueda107]
          Length = 455

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 144/381 (37%), Gaps = 45/381 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+   V  SGG DS  LL AL  +        ++  A+ V+H +   A D   +   + 
Sbjct: 46  APSRWWVGFSGGLDSAVLLHALVQLQ-----LPVQICALHVNHQISPHADDWQAHCEALA 100

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +RL +A             G+  AAR+ARY +  ++    +   ++TAH  DDQ ET+ +
Sbjct: 101 ARLGVAFYAEKVWVINRGKGIEDAARQARYHIFEQYLAPHDC--VLTAHHADDQAETLLL 158

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +G  L+ M          W+ RP L   R+ +  +     + W +D SNTD 
Sbjct: 159 RLMRGTGPRG--LAAMAGKRPLGQG-WLVRPLLSFSRKLLEDYARIHRLVWVDDESNTDL 215

Query: 198 RFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            ++R  +R+ +  +          K ++  +L       +  L  + L         + +
Sbjct: 216 HYDRNYLRQQLLPLLQTRWPGFQRKWQQTAELCAANEQLLEELAQEDLGCLDERAERLGR 275

Query: 255 DI-----LNIDSTLLFYLLRVSAAICGGQISLP---GYRSMERVMLFLKSGKRGCVSIGR 306
            I     L +       LLR    I     ++P    ++ +++ +   +   +  ++  +
Sbjct: 276 SISLDKWLAMSEARRRNLLRYWLRI--QHFAVPEQLHWQQLQQQLTLAREDAQVHITWDQ 333

Query: 307 VVIDRRANFLWIT-------------------RAVRNLPTLILYP---EETTVWDGRYQF 344
           V +      L++                    R   +LPTL +      E     GR   
Sbjct: 334 VSLRVYRQRLYVMPKHAKPGLLQWCTANQGAGRLRADLPTLDIRLRQGGERCRPAGRSHS 393

Query: 345 QNLSDSLIQIGPQSYRKADVP 365
           Q L   L + G + + +  +P
Sbjct: 394 QTLKKLLQEAGIEPWLREQLP 414


>gi|326792451|ref|YP_004310272.1| tRNA(Ile)-lysidine synthetase [Clostridium lentocellum DSM 5427]
 gi|326543215|gb|ADZ85074.1| tRNA(Ile)-lysidine synthetase [Clostridium lentocellum DSM 5427]
          Length = 457

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 123/337 (36%), Gaps = 28/337 (8%)

Query: 1   MFLSPIESVRFFVR--SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M     + ++ F+    L+   + +++ VSGG DSM LL   ++    +   ++      
Sbjct: 1   MAEQIHKKIKRFIEKNQLIEQGNELILGVSGGMDSMMLLHYFYTY---KEVYQVSLKVAH 57

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEH 113
           + H +RE+A  +   V + C    I        +     + +       RE RY      
Sbjct: 58  IHHGIRESADLDAALVEETCRAYHIPFYRHNCNIKALAKQKKCSEEEIGREERYNFFISL 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   I+TAH  +DQ ET+ MR  R    KG+G        +      I RP L   
Sbjct: 118 L--NPGAKIVTAHNMNDQAETMMMRFFRGTDIKGLG-------GILPKRGQIIRPLLDVT 168

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQD 225
           R++I S+     + +  D +N    + R ++R          +    +  L    + +++
Sbjct: 169 RKEIESYCKVHQVPFRHDETNFMPIYTRNKIRLECTPYIESAINPSFIKVLGEHSQLYRE 228

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
               +      L     +    +I+   + + +    +   L  ++     G +     +
Sbjct: 229 EEDFLEGYTKSLFELVASQQETAIVLDEKLLKSYHPYMQKRLFFMAIEKLTGSLKDFSSK 288

Query: 286 SMERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITRA 321
            +E  +  ++      + +  +V + +  + L +T+ 
Sbjct: 289 HLESALALMEGQSGKEIHLPKQVTLRKIYDQLILTKE 325


>gi|154490240|ref|ZP_02030501.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC
           43184]
 gi|154089132|gb|EDN88176.1| hypothetical protein PARMER_00472 [Parabacteroides merdae ATCC
           43184]
          Length = 444

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 136/349 (38%), Gaps = 29/349 (8%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + VR ++   R L     +LV VSGG+DS+ LL  L               A   +  LR
Sbjct: 3   DVVRAYIEKYRLLTENRPVLVGVSGGADSIALLTILVE-------SGYSCIAAHCNFHLR 55

Query: 64  -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            + +  + ++V +   +L +             +     +  AARE RY    E      
Sbjct: 56  GDESLRDEQFVREYARKLDVPFLMTDFDTRKYAADRHLSIEMAARELRYGWFEEQRAATG 115

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  +  AH  DD +ET+ M   R    +GM       + +   N ++ RP L   REDI 
Sbjct: 116 AQAVAVAHHRDDSVETLLMNLVRGTGIRGM-------SGIRPRNGFVVRPLLAVSREDIL 168

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +L  R +++  D +N  D + R  +R  V  + L  +   +K     R   + + A  +
Sbjct: 169 EWLAGRGLTYVTDSTNLSDAYTRNFIRLRVLPL-LEEINPSVKD-AIARTSEHLSAAEAV 226

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KS 296
             ++    R+ +    D L+I + L+ Y    +      +         E V L L  +S
Sbjct: 227 YLHVVEEARNAVVEQGDRLSI-AALMRYPSPDAILYELLKTYGFTRPVAEDVYLSLTKES 285

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
           GK    S  R++ DR  ++L ++  V+             VW G  +  
Sbjct: 286 GKTFFSSTHRLIKDR--DYLLLSPLVKEEVREYTLTGGEKVWSGPVELS 332


>gi|300172734|ref|YP_003771899.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887112|emb|CBL91080.1| tRNA(Ile)-lysidine synthase [Leuconostoc gasicomitatum LMG 18811]
          Length = 435

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 126/299 (42%), Gaps = 26/299 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + ++  ++   + A ++VAVSGG DS+ LL  L   L D      K     V++ LRE +
Sbjct: 3   KKIQKQLQLYHWEATVIVAVSGGVDSVVLLHTLRQQLPDA-----KLVVAHVNYHLREES 57

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             + ++V  +  +        +W N  P   +   AR+ RY    + A   + T ++ AH
Sbjct: 58  DADEKFVHHLADKYHAIFEQTAWLNV-PDIAVEKQARDFRYQFFEQLASKYHTTTVVVAH 116

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ETV ++  R      M L+GM        N  I RPFL   ++++ S+  + N+
Sbjct: 117 HADDQAETVLLKLIRGGQL--MQLAGMSQ-----QNRRIVRPFLCITKQELVSYAQKHNL 169

Query: 187 SWCEDPSNTDDRFE-RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +W ED +N D  +  R  +R+ +          +   +  F +   K ++ +   +  Y+
Sbjct: 170 NWHEDKTNHDAMYTPRNFLRQIIIPQLKKINPRVVPHINSFAEQIKKQDDLITAQVELYV 229

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
                S   I    L  + T+  Y+ +         I       + +V+  L + K+  
Sbjct: 230 QTIENSWQTIPNIWL--EPTIKHYIQKK-------GIYQFKQAQILQVVQLLNNDKKPT 279


>gi|310829345|ref|YP_003961702.1| tRNA(Ile)-lysidine synthetase [Eubacterium limosum KIST612]
 gi|308741079|gb|ADO38739.1| tRNA(Ile)-lysidine synthetase [Eubacterium limosum KIST612]
          Length = 470

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 135/360 (37%), Gaps = 35/360 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDV 76
               IL+ VSGG+DS+ LL  L           ++ +A  ++H +R  A +E   +V   
Sbjct: 17  AGDRILIGVSGGADSLALLYFLKKYQ---GVLNVEIAAAHLNHEIRGKAAEEDHAFVKQF 73

Query: 77  CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C +  I     S        K +  L  A REARYA   E   +     +   H  DDQ 
Sbjct: 74  CIKQSILLYDKSVDVIQLAKKNKISLEEAGREARYAFFKELQSSEAYNKLALGHHLDDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV MR  R    KG  ++GM      + N  I RP L   ++ + S+  +  + +  D 
Sbjct: 134 ETVLMRLIRGTGVKG--VAGMLSETKGESN--IIRPLLCVDKKTVISYCKKNGLHYRTDN 189

Query: 193 SNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-V 244
           +N +    R ++R       R +       L        +    + N++A L    +T  
Sbjct: 190 TNFETDVTRNKLRLEIIPMLREINPRVEEHLSEFAMLAHEYEQFLQNSIAELSTYMITKK 249

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVS 303
             R  + +    L +   L   LLR       G +    Y  +  V   L SGK    + 
Sbjct: 250 SNRVYLNLEMWRLQVP-LLQKELLRQMVFQFKGSLKEIEYNHILCVKEQLLSGKTVWELH 308

Query: 304 I-GRVVIDRRANFLWITRAVRNLPTL---ILYPE------ETTVWDGRYQFQNLSDSLIQ 353
           +   +   RR    WI      +P +    L P+      +  +W    +   +SD  I+
Sbjct: 309 LPHGMQAVRRYELFWIEEKKAVVPEIGCYELLPDKAYYFSKEGLW---IKLTVISDDSIK 365


>gi|330936799|gb|EGH40956.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 445

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 108/309 (34%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +   AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQTAADGWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   L  AAR+ARY+  SE  + +   +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVQV-EPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R+ +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS---------- 253
           +R  V  +                  +  A  +L    L     +  A S          
Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTTRHLGEAQQLLDELALQDIANAQAATSFTWVGLPVLS 261

Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
              I  + +      LR   A          +   E +             +    + R 
Sbjct: 262 LGPIAALSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDAGPLWRLADGTLHRA 320

Query: 313 ANFLWITRA 321
            N +W   A
Sbjct: 321 QNCIWWVPA 329


>gi|237800161|ref|ZP_04588622.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023018|gb|EGI03075.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 445

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 69/310 (22%), Positives = 110/310 (35%), Gaps = 20/310 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    +       AI V H L+  A     +   VC  L + 
Sbjct: 30  VGFSGGLDSTVLLHLLAELARSENLPA--LHAIHVHHGLQAAADAWPEHCRQVCQALGVP 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              VS K  +P   +  AAR+ARY   +E  +     +++ A   DDQ ET+  R  R  
Sbjct: 88  FEQVSVKV-EPGASVEQAARQARYKAFTE--QLGAGDVLLAAQHRDDQAETLLFRLMRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R ++ ++  Q  ++W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPDQRAL---GRGHLVRPLLVVSRIELEAYAHQHGLNWIEDPSNNDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L    L     +    +   L++    
Sbjct: 202 LRGQVLPLLTSRWPQASASLARTAEHLGEAQQLLDELALLDLANAQATTAFAWLDLPVLG 261

Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312
           L  L  +SAA     +       + R+           +       R    +    + R 
Sbjct: 262 LKPLAGLSAARQRNALR-HWLAPLTRLPDTDHWAGWVALRDAAQDARPLWRLADGELHRT 320

Query: 313 ANFLWITRAV 322
            + LW   A 
Sbjct: 321 QDCLWWLPAA 330


>gi|138893739|ref|YP_001124192.1| cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2]
 gi|134265252|gb|ABO65447.1| Cell cycle protein MesJ [Geobacillus thermodenitrificans NG80-2]
          Length = 464

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 17/249 (6%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR F+   R L   A ++V VSGG D    L  LH + S R   K++  A  VDH  
Sbjct: 2   VDKVRAFIDRHRLLTEGATVIVGVSGGPD---SLALLHLLSSLRDEWKLQLVAAHVDHMF 58

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTI 117
           R   +++E+ +V   C+  RI    V         +   G   AAR  RY   +E  K  
Sbjct: 59  RGRESEEEMEFVKHFCAEHRILCEAVQIDVPAFQRRTGLGAQEAARNCRYHFFAELVKKY 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  DDQ+ET+ MR  R    KG   +G+     +  + ++ RPFL   R +I
Sbjct: 119 QAQYVALGHHGDDQVETILMRLVRGSTSKGY--AGIPVKRPFHGS-YLIRPFLAVSRAEI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAV 234
             +  +  ++   DPSN  D + R R R  +  +   +   L+ + +++ ++  +    +
Sbjct: 176 EDYCKKEGLTPRRDPSNEKDDYTRNRFRHHIVPLLKQENPRLHERFQQYSEMMAEDEQFL 235

Query: 235 AMLIPKYLT 243
             L    L 
Sbjct: 236 EELATDALN 244


>gi|148654498|ref|YP_001274703.1| hypoxanthine phosphoribosyltransferase [Roseiflexus sp. RS-1]
 gi|148566608|gb|ABQ88753.1| hypoxanthine phosphoribosyltransferase [Roseiflexus sp. RS-1]
          Length = 682

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 136/340 (40%), Gaps = 49/340 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S   ++R + R +     ++VAVSGG DS+ LL  L ++ ++          + +DH LR
Sbjct: 7   SVRATIRRY-RMIAPGKPVVVAVSGGPDSLCLLDVLANLCAELM---CTLHVVHLDHRLR 62

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
              +  E  +V++   RL IA +V    V     +    L AA R ARY L++  A TI 
Sbjct: 63  GAQSAAEAAFVAETAERLGIAATVEAVDVRALAVERNLNLHAAGRLARYRLLARVALTIG 122

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD------------------ 160
           A  + TAH  DDQ ETV +   R    +G  L G+   + +                   
Sbjct: 123 AQAVATAHHADDQAETVLLHLVRGAGVEG--LRGIRPVVAWGEWRVIGDMDDDDLAALPK 180

Query: 161 --LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDI 211
                 + RP L   R DI ++ ++  +    DPSN D R+ R R+R+ V          
Sbjct: 181 DEHAPRLIRPLLHVARADIETYCVEHGLVPRRDPSNVDRRYLRTRIRQDVLPTLATLNPQ 240

Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
            + AL        +    +   +  +     TV    +    +   ++   L    +R +
Sbjct: 241 IVAALGRTASACAETADFIEQELDRVWDALTTVQTDRLSFDGRRWRDLHPALQHAAIRRA 300

Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
             + GG  +L GY  + R           C S+GR V  R
Sbjct: 301 YTLIGGSDTL-GYDDVMR----------ACESVGRSVGRR 329


>gi|327399626|ref|YP_004340495.1| tRNA(Ile)-lysidine synthase [Hippea maritima DSM 10411]
 gi|327182255|gb|AEA34436.1| tRNA(Ile)-lysidine synthase [Hippea maritima DSM 10411]
          Length = 322

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 136/330 (41%), Gaps = 25/330 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  +E+     + L     I VAVSGG DS+ +L+ L+++        ++ + +  +H L
Sbjct: 5   LKKLEAFAKEHKLLSEKLKIGVAVSGGPDSVFMLMLLNTLAQK---YTLELAVLHFNHKL 61

Query: 63  RETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           RE A+DE  +V  + S L +        V   + + +  +   AR  RY    E    +N
Sbjct: 62  REEAEDEEIFVGKLASSLGLKFLKAEYDVGAFSRQNKLSIEDGARRKRYEFFYESKTKLN 121

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
             +I T HT DD  ET+ M   R  +  G+       + L     +  RP L   +++I 
Sbjct: 122 LDVIATGHTKDDVAETLLMNLIRGSSTDGL-------SSLKPKRGFFIRPILCFEKQEIL 174

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           +FL + NI +  D SN D  F+R ++R  +  +  +     +       + +    + L 
Sbjct: 175 NFLNKNNIQYKIDNSNADTYFKRNKIRAELLPLLKNINPNIVDTLFRSSLILAEDSSYLK 234

Query: 239 PKYLTVHMRSI------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            K     ++S       + I  + +N    +L  +L ++            +R+ ER+  
Sbjct: 235 KKAEVEFIKSTKITADKVIIDINNINTSKAILKRVLNMAIKRLLNSEYNLSFRNTERLTK 294

Query: 293 FLKSGKRGCVSIGRVVID--RRANFLWITR 320
                K   +   R +I   R+ + L I +
Sbjct: 295 VFTEDKNLSL---RKLIKAYRKNDKLIIEK 321


>gi|313905490|ref|ZP_07838854.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6]
 gi|313469674|gb|EFR65012.1| tRNA(Ile)-lysidine synthetase [Eubacterium cellulosolvens 6]
          Length = 507

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 73/299 (24%), Positives = 124/299 (41%), Gaps = 25/299 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVCSRL 80
           + V +SGG+DS+ LL+ L  +L   S G+ + +A+ ++H LR  A  D+ R+V ++C+  
Sbjct: 23  VCVGLSGGADSVALLLVLKEILKMGSVGEYRLAAVHINHNLRGQAAEDDSRFVRELCANR 82

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT--------LIMTAHTF 128
            I   +    V+      + GL  A RE R+   +  AK              I  AH  
Sbjct: 83  EIPLKIYSCPVAEYAGVRKIGLEEAGREVRHEKFALAAKEFAEEMEADPAKAKIALAHHA 142

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET+  R+ R  +    GL+G+  +      L + RP L   R++I ++L Q+ ++W
Sbjct: 143 DDQAETLLFRAARGSSL--SGLAGIRPSATLGE-LLLIRPLLSVTRDEIEAWLRQKGVNW 199

Query: 189 CEDPSNTDDRFERVRV--------RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
             D +N D+R+ R  +        R  V       L L  +        +      +   
Sbjct: 200 RTDETNADERYARNAIRGTVIPCLREKVNGRAALHLALAAEDMAAADAYLKGEAEKIETL 259

Query: 241 YLTVHMRSI-IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
           YL   +    ++IS  +L     L  Y+L  +     G     G   +  +   L    
Sbjct: 260 YLRKDLSGESVSISAQLLKCPEILQNYVLMDALEAAAGYRKNLGREQLTELKDLLAEPA 318


>gi|189467232|ref|ZP_03016017.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM
           17393]
 gi|189435496|gb|EDV04481.1| hypothetical protein BACINT_03617 [Bacteroides intestinalis DSM
           17393]
          Length = 443

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 127/351 (36%), Gaps = 41/351 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    IE      +       ILV +SGG+DS+ LL  L  +            A   + 
Sbjct: 1   MNKKKIEQYIDQEKLFTREDKILVTLSGGADSVALLRLLLDM-------GYTCEAAHCNF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR + +  +  +V ++C +L +   V  ++      K    +  AARE RYA   +   
Sbjct: 54  HLRGDESVRDEMFVRELCLQLVVPLHVQHFQTMEEAEKRHISIEMAARELRYAWFEQLRL 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A +I  AH  DD +ET+ +   R     G+         +   N  I RP L   R+
Sbjct: 114 QQGADVIAVAHHKDDSVETLLLNLIRGTGINGL-------LGIRPKNGNIVRPLLCLDRK 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228
           +I  +L +   S+  D +N  D + R ++R       + +      +L    +   D  +
Sbjct: 167 EITEYLQEIGQSYVTDSTNLQDEYTRNKIRLNLLPLMQEINPSVKESLLRTSEHLNDAAL 226

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
                +     K  T     I A+ Q+      TLLF +L                  ++
Sbjct: 227 LYKKGIEEGKQKVQTEQGILISALLQEP--APETLLFEILSPLGF---------NSAQIK 275

Query: 289 RVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
            +   L  + GK       RV+ DR    L I        + +  P++  +
Sbjct: 276 DIFTSLNGQPGKIFLSREWRVIKDRE--LLLIEPVYSEDASTVFSPDDPAL 324


>gi|297566040|ref|YP_003685012.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
 gi|296850489|gb|ADH63504.1| tRNA(Ile)-lysidine synthetase [Meiothermus silvanus DSM 9946]
          Length = 524

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/394 (23%), Positives = 148/394 (37%), Gaps = 43/394 (10%)

Query: 1   MFLS---PIESVRFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54
           MF S   P      F +SL        ++ AVSGG DS+ LL  L ++         +  
Sbjct: 1   MFRSEATPHLIEARFSQSLAELEVRGSVVAAVSGGGDSVALLYLLKAL-------GFEAI 53

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALI 110
               DH LR ++ +E  +V  +   L     V   +      + +  L A ARE RYA +
Sbjct: 54  VAHFDHALRPSSAEEAVWVQHLAEALGYPCEVTRVEVQRVAQRKKRNLEATARELRYAFL 113

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           S  AK      I+TAHT DDQ ETV ++  R              T +      + RP L
Sbjct: 114 SRVAKKYRTEAILTAHTQDDQAETVLLQLVRGTG---------RATGIRKRQGRVVRPLL 164

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLR 227
              R ++R +L  +  SW EDP+N D   +R  +R  V     +        + +F ++R
Sbjct: 165 GFTRAELRGYLRAKGASWLEDPTNQDPALDRNYLRHEVLPRLEVRFRGAVGSLARFAEVR 224

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDIL--NIDSTLLFYLLRVSAAICGGQISLPGYR 285
              +  +     + L    R  +   + I        L    +R      G     P YR
Sbjct: 225 QAEDPLLEEGAAQRLLPDRRWPVPAYRAIPLERAAPGLRRRAIRQILERLGIH---PEYR 281

Query: 286 SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
            +  V   L+   +     G VV+ R+   L+   A        L P   T   G Y   
Sbjct: 282 LIADVETALEG--QPRTLPGGVVVRRKGGTLFFLTA----EAPPLEPGWRTPEPGDYLEI 335

Query: 346 NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSS 379
            L    +    +   +  +P+ +  +   RA++S
Sbjct: 336 PLGRKRL---VEFLAERGLPAELKRVWPIRAVAS 366


>gi|317496225|ref|ZP_07954585.1| tRNA(Ile)-lysidine synthetase [Gemella moribillum M424]
 gi|316913800|gb|EFV35286.1| tRNA(Ile)-lysidine synthetase [Gemella moribillum M424]
          Length = 446

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 18/276 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E +  F         + +A+SGG DS+ L   L +          +     ++H LR+ 
Sbjct: 5   VELIENFDVLWTKEDRLALALSGGVDSIVLFHLLVT---KYRHTYKELVVFHINHGLRKE 61

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATL 121
           + +E  +V    S   I       +               AR+ RY   +E A   N T 
Sbjct: 62  SYEEAEFVEKFVSNYDIRFYKKELEMNSLARDKHISEEMLARKLRYKAFNEMAAKENITK 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+TAH  +DQ+E + MR     +      +   D      NL I RP L   +E +  + 
Sbjct: 122 ILTAHHKNDQVENILMRLLTGRSMD---YNLAIDNKGRHGNLTIYRPLLNVLKETLEQYA 178

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK---KFQDLRVKVNNAVAMLI 238
            + N+ +  D SN D  + R  +R  +  +      +       F +    +N+ +   +
Sbjct: 179 QENNLKYYTDESNFDTDYTRNNIRHNIIPLLNDVSTVSFDNLINFAEYYKNINDELKTRL 238

Query: 239 -----PKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
                   L  +   ++ +  ++L++ +  +++LL+
Sbjct: 239 LANKDNYILEKNQEKVVLLRAEVLSLSAEEIYFLLK 274


>gi|218890137|ref|YP_002439001.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58]
 gi|254236552|ref|ZP_04929875.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126168483|gb|EAZ53994.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218770360|emb|CAW26125.1| putative cell cycle protein [Pseudomonas aeruginosa LESB58]
          Length = 442

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 123/376 (32%), Gaps = 34/376 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L  +   RS      SA+ V H L+  A     +   VC  L I 
Sbjct: 25  VAFSGGLDSTVLLHLLAQLA--RSEALPALSALHVHHGLQAAADGWPAHCQVVCRSLGIP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V   + +     +  AAR+ARY      A      +++TA   DDQ ET+  R  R  
Sbjct: 83  LRVERVQVA-VGGSIEQAARDARYRAFQ--ANLGEGQVLLTAQHLDDQAETLLFRLLRGA 139

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R ++ ++     + W EDPSN D RF R  
Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNY 196

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260
           +RR +           +         +  A   +A L    L    +       D L++ 
Sbjct: 197 LRREIMPRLASHWPQAVAGMARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLP 256

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVI 309
              L   LR  +A     +       + R+           +            +    +
Sbjct: 257 RIAL-EPLRRLSAARQRNLLRAWLGQLTRLPDSDHWAGWESLRDAGDDADPIWRLESGEL 315

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADV 364
            R A  +W       LP          VW+       L  +     L ++     R    
Sbjct: 316 RRGAGRIWW------LPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYR 369

Query: 365 PSGIPPIIAQRALSSM 380
             G    +A R    +
Sbjct: 370 RGGEVLALAGRGRRDL 385


>gi|292489208|ref|YP_003532095.1| cell cycle protein [Erwinia amylovora CFBP1430]
 gi|292898558|ref|YP_003537927.1| tRNA(Ile)-lysidine synthase [Erwinia amylovora ATCC 49946]
 gi|291198406|emb|CBJ45513.1| tRNA(Ile)-lysidine synthase [Erwinia amylovora ATCC 49946]
 gi|291554642|emb|CBA22328.1| cell cycle protein [Erwinia amylovora CFBP1430]
          Length = 433

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/357 (22%), Positives = 143/357 (40%), Gaps = 24/357 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + ++     +L     +L+A SGG DS  LL  L  +   R   +++  A+ + H L   
Sbjct: 1   MSAISHLEHALATERAVLLAYSGGLDSSVLLHQLVQLREQR--PQLQLRAVHIHHGLSPL 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A   V +    C R R+   VV  +    + G+ AAAR+ARY  + +         ++TA
Sbjct: 59  ADGWVAHCQQQCDRWRVPLVVVRVQVDAREGGIEAAARQARYQALRQQLAA--GETLLTA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET+ +  +R     G+        +    +    RP L   R+ + S+  +  
Sbjct: 117 QHLDDQSETLLLALKRGSGPAGLAAMPQQQLL---GDHRHLRPLLAQSRQQLESWAQRYQ 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I W ED SN D R++R  +R  V  + L+  +           ++      L+ + L   
Sbjct: 174 IGWIEDDSNLDPRYDRNFLRLQVMPL-LNQRWPHFASAVARSAQLCGEQERLLDELLAES 232

Query: 246 MRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSG 297
           + +++  S       +L +       LLR    I     S+P   +++R+ L     ++ 
Sbjct: 233 LDALVDESGALCFTPLLTMSDARRSALLRRW--IARQHGSMPSRAALQRIWLEVACSRAD 290

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
              C+ +G   + R  + L+       LP  +        W   +Q   L D L Q+
Sbjct: 291 AEPCLRMGSREVRRFRDRLYW------LPQRLPLGASQLAWPAPWQPLTLPDGLGQL 341


>gi|221133298|ref|ZP_03559603.1| tRNA(Ile)-lysidine synthetase [Glaciecola sp. HTCC2999]
          Length = 426

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 133/326 (40%), Gaps = 34/326 (10%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           + +    + +A+SGG DS+ LL A+              + + V+H L+  A    ++  
Sbjct: 16  AFIQKRPVYLALSGGMDSVVLLNAVMQQWP--VDAPYPLTLLHVNHHLQADAALWAKHCQ 73

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            + +R  I   V+  +   P   + + AR ARY  +          +++ A   DDQ+ET
Sbjct: 74  SLANRYNIPCHVLDVQLDSPNKNIESQARHARYTALFNAMSHNG--VLLVAQHADDQVET 131

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLN---------LWISRPFLRCRREDIRSFLLQRN 185
           ++++ +R     G GL+G+   + +            + I RP L   +  I  +     
Sbjct: 132 LFLQLKR-----GAGLTGLSGMVPWQSGFQQFGAHPSMHIYRPLLGVTQAQINEYASVHL 186

Query: 186 IS--WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
               W +DPSNTD +F+R  +R  V  + L + + +  K     + V N    L+ +   
Sbjct: 187 SPNDWVDDPSNTDTKFDRNFLRNDVIPL-LSSRWKQWTKKVVQSMSVLNEEHTLLNEVTQ 245

Query: 244 VHMRSIIAISQDILNIDST----LLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSG 297
             + + +   + I+N  +T        ++R  A              ++++  ++  K  
Sbjct: 246 ERLLACLNTDKLIVNKFTTYSSSWQKQIVRHFALEIANVA--LSQAQLQQLFQIIHAKED 303

Query: 298 KRGCVSI-----GRVVIDRRANFLWI 318
            RG +S+      +V  +R    L++
Sbjct: 304 ARGRLSVKNNTNAQVHFERFQGQLYV 329


>gi|91762265|ref|ZP_01264230.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718067|gb|EAS84717.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1002]
          Length = 351

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 137/316 (43%), Gaps = 10/316 (3%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL    ++ VAVSGG DS+ L   L    S ++  K+KF    VDH LR  +  E  
Sbjct: 32  FSSSLNSEENLAVAVSGGPDSLALAY-LAKCYSIKNKIKVKFFL--VDHRLRNESTKEAT 88

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            V  +  ++ I   V+ WK  KP   + + AREARY+L+S+  K  N   ++  H  +D 
Sbjct: 89  LVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDL 148

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E   +R  R     G+ +S        D +L I RP L  ++ D+ +        + +D
Sbjct: 149 VENFLIRVVRGSGLNGL-VSFNKSVKYKDEDLNILRPLLNLKKNDLINISKIVFKFFIKD 207

Query: 192 PSNTDDRFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAV-AMLIPKYLTVH 245
           PSN ++ ++R R+R  +       +DL  L L +   +D    +   V   L      + 
Sbjct: 208 PSNINEIYKRTRIRTLLESLEKEGLDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIK 267

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
            +    +S +  +    ++F  L       G +      +S+  ++  +       +++G
Sbjct: 268 TKDTYILSHNFFDQSHEVVFRSLTFVIQKIGKKYYPVRGKSINELINRIILKTFSKITLG 327

Query: 306 RVVIDRRANFLWITRA 321
              ++R    + I+R 
Sbjct: 328 GCFVERVNETILISRE 343


>gi|331003927|ref|ZP_08327416.1| hypothetical protein HMPREF0491_02278 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411947|gb|EGG91347.1| hypothetical protein HMPREF0491_02278 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 497

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 26/221 (11%)

Query: 7   ESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +++  F+    L+     I++ VSGG+DS+ LL  L  +        I+   + ++H +R
Sbjct: 5   DALSHFIEENQLIKKGDRIVLGVSGGADSICLLNILSCIQKALE---IRLFVVHINHGIR 61

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI- 117
            E AK +  +V D C RL +      +   K     +     A R+ARY+     AK I 
Sbjct: 62  GEEAKRDEDFVRDFCKRLNVEFFAFHYDIKKMAREQKISEEEAGRKARYSTFDTVAKKII 121

Query: 118 ---NAT----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
               A      I  AH  DD  ET+     R     G+         +   N  I RP L
Sbjct: 122 QKEGADAQNVKIAIAHNKDDNAETILHNLSRGSGISGL-------KGILAQNGNIIRPLL 174

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
              R++I  +L + NI +  D +N ++ + R  +R  V  I
Sbjct: 175 SFSRQEIEEYLSKNNIEYMTDSTNLENEYTRNVLRNEVFPI 215


>gi|304570552|ref|YP_266024.2| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062]
          Length = 346

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 136/316 (43%), Gaps = 10/316 (3%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL    ++ VAVSGG DS+ L   L    S ++  K+KF    VDH LR  +  E  
Sbjct: 27  FSSSLNSEENLAVAVSGGPDSLALAY-LAKCYSIKNKIKVKFFL--VDHRLRNESTKEAT 83

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            V  +  ++ I   V+ WK  KP   + + AREARY+L+S+  K  N   ++  H  +D 
Sbjct: 84  LVKKILQKIGITCKVLIWKGKKPSRNIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDL 143

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E   +R  R     G+ +S        D +L I RP L   + D+ +        + +D
Sbjct: 144 VENFLIRVVRGSGLNGL-VSFNKSVKYKDEDLNILRPLLNLEKNDLINISKIVFKFFIKD 202

Query: 192 PSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAV-AMLIPKYLTVH 245
           PSN ++ ++R R+R  +       +DL  L L +   +D    +   V   L      + 
Sbjct: 203 PSNINEIYKRTRIRTLLEFLAKEGLDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIK 262

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
            +    +S +  +    ++F  L       G +      +S+  ++  +       +++G
Sbjct: 263 TKDTYILSHNFFDQSHEVVFRSLTFVIQKIGKKYYPVRGKSINELINRIILKTFSKITLG 322

Query: 306 RVVIDRRANFLWITRA 321
              ++R    + I+R 
Sbjct: 323 GCFVERVNETILISRE 338


>gi|304312484|ref|YP_003812082.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium
           HdN1]
 gi|301798217|emb|CBL46439.1| Predicted tRNA(Ile)-lysidine synthetase [gamma proteobacterium
           HdN1]
          Length = 463

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 123/312 (39%), Gaps = 23/312 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV  SGG DS  LL          S   +   A+ V+H L   A    ++  D+C  
Sbjct: 20  GRLLVGFSGGLDSTVLLYLARRWSLQSS---VPIVAVHVNHQLSAHAFAWQQHCVDLCEA 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             IA    +        G+ +AAR ARY +    AK   + +++  H  DDQ+ET ++R 
Sbjct: 77  WGIALHCEAVHVDAHGVGVESAARAARYQVFQRLAKP--SDVLLLGHHRDDQVETFFLRL 134

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R      +GL+ M D   +   L I RP L   +  +  F   +  +W ED SN  DR+
Sbjct: 135 MRGSGV--LGLASMDDVSEW-QGLCIVRPLLGLSKSVLHEFAKSQQWTWVEDESNQSDRY 191

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
           +R  +R  V    L   +    +  +  V+       L+ +   + + ++      I ++
Sbjct: 192 DRNFLRLEVLPR-LAQRWPSSAEAVERSVRHCREAQGLLDELAAMDVETLCQTDGGI-SV 249

Query: 260 DSTLLFYLLR----VSAAICGGQISLPGYRSME---RVMLFLKSGKRGCVSIGR------ 306
           D   L  L R    +   +   ++SLP    +     VML         V +        
Sbjct: 250 DRLRLLSLSRARNVLRYWLRSFRLSLPSEARLNETLAVMLQSAEDAAPLVLLQDTGLRQS 309

Query: 307 VVIDRRANFLWI 318
           V + R    +++
Sbjct: 310 VELRRFDGAIYV 321


>gi|327480171|gb|AEA83481.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri DSM 4166]
          Length = 441

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 104/306 (33%), Gaps = 20/306 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL AL  +   ++   I+  AI V H L+        +   VC +L + 
Sbjct: 34  VAFSGGLDSTVLLHALTRLSERQALPVIR--AIHVHHGLQAAGDHWPAHCQRVCDQLGVT 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V  +   P   L  AAR+ARY   S  A      L++T    DDQ ET+  R  R  
Sbjct: 92  LEIVRVRVV-PGASLERAARDARYQAFS--ACVGEGELLLTGQHRDDQAETLLFRLLRGA 148

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+       ++       + RP L   R ++  +     ++W EDPSN    + R  
Sbjct: 149 GVRGLAAMPDVRSM---GRGSLVRPLLEVSRAELEDYARANGLAWVEDPSNQQLEYSRNF 205

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +RR V  +                  +  A  +L          +        LN+ S  
Sbjct: 206 LRRQVLPLLQQRWPRAASNLARTAALMAEAQHLLDELAQQDLAAAQAGSDCRWLNLPSLA 265

Query: 264 L-----------FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
           L              LR   A          +   E  +   K        +    + R 
Sbjct: 266 LAPLRELTSARQRNALRHWLAGLTLAPDENHWAGWE-CLRDAKPDATPRWRLEGGELQRS 324

Query: 313 ANFLWI 318
              +W 
Sbjct: 325 GERVWW 330


>gi|297181898|gb|ADI18075.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [uncultured Acidobacteriales bacterium
           HF0200_23L05]
          Length = 485

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 142/381 (37%), Gaps = 40/381 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ++VA+SGG DS+ L   L  + +   +  + F  + ++H LR  A ++  + 
Sbjct: 31  RLIPQGGRVVVALSGGGDSVVLAHLLCEMSAIARWSVVGF--LHINHQLRAVANEDADFC 88

Query: 74  SDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +   L +   +    V   +      +  A    RY + +   ++  A  + T HT D
Sbjct: 89  RQLSDELHVPFLIEAVNVRAMSRDRGISIEEAGHRLRYEIFNRICRSHLADCVATGHTRD 148

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  ETV +R  R    +G+       + +   N ++ RP L   R+++R +L  R +   
Sbjct: 149 DLAETVLLRLIRGAGPRGL-------SGIRPRNGFVVRPLLDVTRKELREYLQVRGLPHR 201

Query: 190 EDPSNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV- 244
           ED +N D    R R+R     F++      +   + +   +    +  +   + + +   
Sbjct: 202 EDATNEDTSVARNRIRHSLIPFLKTNFSEGIVDVLAREASIARADDEWMEREVDQAVGQM 261

Query: 245 --HMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +   +  I  D +  + + L   + +      GG      +    R+   +++  +  
Sbjct: 262 VCYGEEVADIDCDAIAKLPTALSRRVSKRVLEHIGGHPV--SFDQTNRLFSLIRTSSQSD 319

Query: 302 VSI---GRVVID---RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
           VS+   G  +I    R     W  RA      +             +++       +++ 
Sbjct: 320 VSVDFPGSRLIRSSNRTQLVRWQGRAGNRQSRVSE-----------FEYALPIPGEVKVP 368

Query: 356 PQSYRKADVPSGIPPIIAQRA 376
                 +  PSG  P ++ R 
Sbjct: 369 ELGEIISATPSGSVPGLSARG 389


>gi|325679361|ref|ZP_08158946.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8]
 gi|324108958|gb|EGC03189.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 8]
          Length = 444

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 132/386 (34%), Gaps = 36/386 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66
           ++R F         +LV +SGG+DS  LL+ L  +           SA  V+HC+R E A
Sbjct: 12  TIRKF-HMAEKGERLLVGLSGGADSAALLLCLDEL-------GYDVSACHVNHCIRGEEA 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLI 122
             +  +   +C  L I   V                   AR  RY  +    + I+A  I
Sbjct: 64  DRDQHFCERLCEGLGIGIIVRRVDVPAYCRANPVSEEEGARLLRYNAL----QEISADKI 119

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            TAH  DD LET      R    KG+         +  +   I RP + C R DI ++L 
Sbjct: 120 CTAHNLDDCLETTLFNLARGSGLKGIA-------SIPPVRGNIIRPLIECSRADIEAYLA 172

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +R   +  D +N  D + R ++R  V  +        M+ F      +    A L     
Sbjct: 173 ERGQDFVTDSTNLLDEYSRNKLRHKVVPVLREINPSLMETFAKTLGFLREDSAFLEKTAD 232

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKRG 300
                SII        I    L Y LR      I            +E +   + +G + 
Sbjct: 233 KAFEESIIGDGFSRKTIRG--LDYPLRRRVIMRILAKNDIGISQDKIELIEQLVNNGGKA 290

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR---YQFQNLSDSLIQ 353
            V         +++ L+I             +++ P+   +W  R   ++   +      
Sbjct: 291 SVK-SECFAYTKSDILYIYNENNRPKSAEDEVVIRPDTVIIWQNRHICFKIIEIDGKFEN 349

Query: 354 IGPQSYRKADVPSGIPPIIAQRALSS 379
           +  +          I  +I  R   +
Sbjct: 350 VNKKFANSCLDYDKIRGVIVLRKRRA 375


>gi|319955124|ref|YP_004166391.1| tRNA(ile)-lysidine synthase [Cellulophaga algicola DSM 14237]
 gi|319423784|gb|ADV50893.1| tRNA(Ile)-lysidine synthase [Cellulophaga algicola DSM 14237]
          Length = 435

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 121/310 (39%), Gaps = 27/310 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSD 75
           +   H L+A SGG DS+ L+    ++        ++FS    +  LR   +  +  +V  
Sbjct: 16  LKNKHFLLACSGGIDSVILVHLCKAI-------GLEFSLAHCNFNLRGLESDADEAFVKL 68

Query: 76  VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           + +  +I   V S+  ++     +  L  AARE RYA  SE         ++TAH  DD 
Sbjct: 69  LAADFKIPFYVTSFDTAQYMNTHKVSLQIAARELRYAWFSELQSKHKIPTLVTAHHADDS 128

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET  +   R     G+       T + +    I+RP L   RE I  +  +  ISW ED
Sbjct: 129 LETFLINLSRGTGIDGL-------TGIPERTPTIARPLLLFSREQILDYAHRFTISWRED 181

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            SN + ++ R ++R  +           +  F   +  +    A L+  ++     ++  
Sbjct: 182 KSNQETKYLRNKIRHKIVPHLKELHPSFLPNFLQSQQHLAE-TASLLNHHIQELRATLFK 240

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISL--P-GYRSMERVMLFLKSGKRGCVSIGRVV 308
              D   +        L+   A+      L  P G+   E ++  L +     +      
Sbjct: 241 KDGDGFVVS----IAALKKQNALESLVYHLFKPFGFSDAEALIALLSAMSGKELHSVSHR 296

Query: 309 IDRRANFLWI 318
           + +  + L++
Sbjct: 297 LLKDRDNLYL 306


>gi|163801796|ref|ZP_02195693.1| cell cycle protein MesJ [Vibrio sp. AND4]
 gi|159174304|gb|EDP59108.1| cell cycle protein MesJ [Vibrio sp. AND4]
          Length = 409

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 61/303 (20%), Positives = 124/303 (40%), Gaps = 17/303 (5%)

Query: 35  LLIALHSVLS--DRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-N 91
           +L  L             I   A+ V H L   A +          ++ +   V     +
Sbjct: 1   MLELLSRYQQVNATDSNPIHCHAVYVHHGLSANADEWAAKCLTWAKQVGMTCFVERVTLD 60

Query: 92  SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
           ++    +   AR+ARY  +++H +     L++T    DDQ+ET  +  +R    KG  LS
Sbjct: 61  TQSGESIELLARDARYQALAKHIQA--GDLLLTGQHADDQVETFLLALKRGSGPKG--LS 116

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD- 210
            M +++ +  +  + RPFL  +RE I +   ++ + W ED SN D RF+R  +R  +   
Sbjct: 117 SMAESMPFA-DGTLVRPFLTVKREQIEAVAKEQGLDWVEDESNQDTRFDRNFLRHRILPT 175

Query: 211 --IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YL 267
                 +++  +++   L  +    +  L+       ++S +++S   L++ S L    L
Sbjct: 176 LSERWPSIHHAVQRSAALCAQQEALLDELLDAVFERALQSDLSLSIGELSLHSELARARL 235

Query: 268 LRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
           +R+  A      S+P    +  +       +      + + +  + R  N L+      +
Sbjct: 236 VRMWLAKL--NASMPTQVQLNLIWNEVALAQQDANPKLQLKQGEVRRFQNCLYWVTETAD 293

Query: 325 LPT 327
           + T
Sbjct: 294 VTT 296


>gi|315650239|ref|ZP_07903312.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487484|gb|EFU77793.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 495

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 126/345 (36%), Gaps = 40/345 (11%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+++  F++    +     I++ VSGG+DS+ LL  L+ +   +   +I+   + ++H +
Sbjct: 4   IDTLSHFIKDNNLIEKEDRIVLGVSGGADSICLLHTLNEL---KKALEIRLFVVHINHGI 60

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTI 117
           R E A  +  YV + C +L +      +   K     +     A R+ARY      +K I
Sbjct: 61  RGEEASRDENYVREFCKKLNVEFFSFHYSIPKVADMLKISEEEAGRKARYDSFENVSKDI 120

Query: 118 NAT--------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +           I  AH  +D  ET+     R     G+         +   N  I RP 
Sbjct: 121 SKIEKIDISKIKIAVAHNKNDTAETMLHNLTRGSGISGL-------KGILAKNGRIIRPL 173

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR--------FVRDIDLHALYLKMK 221
           L   R++I  +L +  I +  D +N ++ + R  +R          V +  ++  Y    
Sbjct: 174 LSFTRDEIEEYLDKNKIKYMTDSTNLENEYTRNILRNKVFPILAEHVNNNVINNFYKSAM 233

Query: 222 KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL-----FYLLRVSAAICG 276
              +      ++      K L    +S   +++  L  +  +L      Y L+       
Sbjct: 234 VANEADRYFEDSAQKFCEKNLKNTNKSGYRLNKSKLMKNPHILGTYIIRYALKEILKEKN 293

Query: 277 GQISLPGYRSMERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITR 320
             I   G   +E +    KS     + +   + +      L    
Sbjct: 294 SGIKDIGMVHIEDIWQLAKSETGKRLDLKYDIRVYNDYEHLRFVE 338


>gi|218190457|gb|EEC72884.1| hypothetical protein OsI_06667 [Oryza sativa Indica Group]
          Length = 694

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 72/327 (22%), Positives = 126/327 (38%), Gaps = 40/327 (12%)

Query: 10  RFFVRSLV-----YPAHILVAVSGGSDSMGLLIALHSV--------LSDRSFGKIK---- 52
           R F R +          + V VSGG DSM L +   +           D   G +     
Sbjct: 55  RAFARRMALAGVHPHHRVAVGVSGGPDSMALCVLAAAWKKAGEGREQEDEGEGGVSGFVD 114

Query: 53  -FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTG-LMAAAREARYA 108
               + VDH LR  + DE + V D    + +   +    W N +P+ G +  AARE RY 
Sbjct: 115 GLLGVVVDHGLRPESADEAQLVRDRVRGMGVVCEIATCEWPNGRPKLGHIQEAAREMRYQ 174

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------- 161
            + +        +++ AH  DDQ E   +R  R+    G+  +     +           
Sbjct: 175 KLLDICIKQRIAVLLIAHHSDDQAELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDN 234

Query: 162 ----NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH--- 214
                + + RP L   ++D+       N  W EDP+N    + R R+R  +R + +    
Sbjct: 235 FSRYGVILVRPMLEFSKDDMYKICQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGTF 294

Query: 215 --ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL---NIDSTLLFYLLR 269
              L+  +   +  R  ++NA +M++ K LT+       I  + L   N+D   L   L 
Sbjct: 295 QSELHKLIYACRLTRAFIDNACSMVLKKSLTIMEHGYAVIDLEKLDPHNVDDLFLSRYLA 354

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKS 296
                   +      RS + ++ ++++
Sbjct: 355 YVLQFVSQRHRPLRGRSAQLLIDYIRT 381


>gi|153812536|ref|ZP_01965204.1| hypothetical protein RUMOBE_02935 [Ruminococcus obeum ATCC 29174]
 gi|149831461|gb|EDM86549.1| hypothetical protein RUMOBE_02935 [Ruminococcus obeum ATCC 29174]
          Length = 471

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 121/313 (38%), Gaps = 32/313 (10%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M+   ++ V+ F+     L   + I++ VSGG DSM +L  L+ +   R     +   + 
Sbjct: 1   MYKDTLQKVKRFMTETGMLQNCSEIILGVSGGPDSMTMLHILNGL---RDEFGYRLRVVH 57

Query: 58  VDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISE 112
           V+H +R   A  + + V  +CS  +I  +V ++         + G   A R+ R     +
Sbjct: 58  VNHGIRGKEALRDQQMVEKICSEWKIPCAVYNYDVPALALSWKMGTEEAGRKVRRIAFEK 117

Query: 113 HAKTINATLI------MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             +  NA  I        AH  +D  ET+     R    +G+         L  LN  I 
Sbjct: 118 --EKENAVAIPEQVRVALAHNQNDMAETMLHHLARGTGIRGL-------CSLKPLNGEII 168

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQD 225
           RP L   R +I +++ + +I    D SN +D + R R+RR +  +    +  +      +
Sbjct: 169 RPLLCLERSEIVNYVEENSIQTVLDSSNMEDDYTRNRIRRHILPLIEQEVNPRAVTHMAE 228

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIA-----ISQDILNIDSTLLFYLLRVSAAICGGQIS 280
                  A A        +      A     +  +    ++ +  Y++R    + GG  S
Sbjct: 229 ASEIFGQAEAYFTKLAGEMAAGYRKAKDRYVLDHEFFKKETIIQTYVIREILEVTGGHQS 288

Query: 281 LPGYRSMERVMLF 293
                 ++++   
Sbjct: 289 DLTSGHIKQIRDL 301


>gi|254374646|ref|ZP_04990127.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548]
 gi|151572365|gb|EDN38019.1| hypothetical protein FTDG_00820 [Francisella novicida GA99-3548]
 gi|332678549|gb|AEE87678.1| tRNA(Ile)-lysidine synthetase [Francisella cf. novicida Fx1]
          Length = 398

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 102/264 (38%), Gaps = 13/264 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+HI++  SGG DS  LL     +        I   AI ++H L   +     +   +C
Sbjct: 16  SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQIC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++ R     G+        + +     + RP L+  + +I  F    NIS+  D SN D 
Sbjct: 129 QAIRGSGLAGLAGIPYYKELQHGG---VLRPLLKYSKIEIEEFAKLNNISYIYDDSNEDI 185

Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           ++ R  +R  +  I       +   + +  ++  + NN +  L+ + L    +    I  
Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245

Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278
           +++ +D  +   LL +       Q
Sbjct: 246 ELIKLDDDIQKSLLHLWFKQNTQQ 269


>gi|15674260|ref|NP_268433.1| putative cell-cycle protein [Streptococcus pyogenes M1 GAS]
 gi|71909825|ref|YP_281375.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS5005]
 gi|94989520|ref|YP_597620.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS10270]
 gi|94993407|ref|YP_601505.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS10750]
 gi|61217414|sp|Q9A201|TILS_STRP1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|13621335|gb|AAK33155.1| putative cell-cycle protein [Streptococcus pyogenes M1 GAS]
 gi|71852607|gb|AAZ50630.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS5005]
 gi|94543028|gb|ABF33076.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS10270]
 gi|94546915|gb|ABF36961.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS10750]
          Length = 428

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H+L+AVSGG DSM LL  L+         KI+     V+H  R  +  E  Y+     
Sbjct: 20  HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I   V +++          AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 77  KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R RVR       L  L  +  +F     ++    ++L   +  +          +   
Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239

Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300
              ++ ++LL+       G   L        +++  +++ K+G
Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279


>gi|28894923|ref|NP_801273.1| cell cycle protein [Streptococcus pyogenes SSI-1]
 gi|71902678|ref|YP_279481.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS6180]
 gi|61217343|sp|Q879R7|TILS_STRP3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28810168|dbj|BAC63106.1| putative cell cycle protein [Streptococcus pyogenes SSI-1]
 gi|71801773|gb|AAX71126.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS6180]
          Length = 428

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H+L+AVSGG DSM LL  L+         KI+     V+H  R  +  E  Y+     
Sbjct: 20  HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I   V +++          AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 77  KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R RVR       L  L  +  +F     ++    ++L   +  +          +   
Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239

Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300
              ++ ++LL+       G   L        +++  +++ K+G
Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279


>gi|139472899|ref|YP_001127614.1| PP-loop family protein [Streptococcus pyogenes str. Manfredo]
 gi|134271145|emb|CAM29355.1| PP-loop family protein [Streptococcus pyogenes str. Manfredo]
          Length = 428

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H+L+AVSGG DSM LL  L+         KI+     V+H  R  +  E  Y+     
Sbjct: 20  HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I   V +++          AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 77  KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIRGSRLRY--LSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R RVR       L  L  +  +F     ++    ++L   +  +          +   
Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239

Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300
              ++ ++LL+       G   L        +++  +++ K+G
Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279


>gi|293610423|ref|ZP_06692724.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827655|gb|EFF86019.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 466

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 129/312 (41%), Gaps = 23/312 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +     +  L+  SGG DSM LL  +  +   +         I +DH L+  + +    
Sbjct: 24  AQEFSENSTFLIGCSGGMDSMLLLHLMSQIFPHK------IRIIYIDHQLQSKSAEWGEL 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V+   +RL I +++   + +     L A AR+ARY    +H +     +++ AH   DQ 
Sbjct: 78  VAKQATRLNIPYTIQKVQVTD--GNLEAQARQARYYAYLQHLQAN--EILVLAHHQQDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +R        G+      D   + +++ I RPFL   RE I  +  Q  I + +DP
Sbjct: 134 ETVILRLLSGAGVDGLAAMQCID---HRVDMTIWRPFLDLTREQIAEWTTQLEIEYVDDP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +N D  ++R   R  +    L   + KM++       +    + ++ + L   +++    
Sbjct: 191 TNYDIHYDRAWSREELWP-FLQNRFPKMQQALSRTSYLMQDASEILEEVLKADLQNCGTD 249

Query: 253 SQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305
                  +L + S     LL  S  + G     P +  +ER+   ++  KS  +  +   
Sbjct: 250 ECLDLTWLLKLSSARQRQLL--SVWMKGDGQYRPAFEMVERLKNEVIASKSDAQAALHWN 307

Query: 306 RVVIDRRANFLW 317
           +    R  ++L+
Sbjct: 308 QFYYVRYQHYLY 319


>gi|330504227|ref|YP_004381096.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01]
 gi|328918513|gb|AEB59344.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina NK-01]
          Length = 440

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 115/306 (37%), Gaps = 20/306 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS  LL  L +            SAI V H L+  A     + + VC+RL I 
Sbjct: 23  IAFSGGLDSSVLLHLLAAWARYEELPA--LSAIHVHHGLQPAADGWPEHCAQVCTRLGIP 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V  + + P   L  AAR  RYA  +E  +  +  +++ A   DDQ ET+  R  R  
Sbjct: 81  LDIVRVQVA-PGASLEQAARRVRYAAFAE--RLGSGEVLLGAQHRDDQAETLLFRLLRGA 137

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L C R +++++  +R ++W EDPSN D+RF R  
Sbjct: 138 GVRGLAAMPASRPL---GQGSLVRPLLDCSRAELQAYAQRRGLAWVEDPSNADERFSRNF 194

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDIL---- 257
           +R  V  +                  ++ A  +L  + +   +  R + A+    L    
Sbjct: 195 LRGQVMPLLAERWPQMTASLARSAGHLSEAQQLLDELAEMDLLAARGVCALPWLPLPSLD 254

Query: 258 -----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                 +       LLR   A          +     +     +       +    + R 
Sbjct: 255 LSAVTALSDARQRNLLRHWLAPMSRMPDSDHWAGWYDLRD-AAADATPIWKLADGELHRA 313

Query: 313 ANFLWI 318
              LW 
Sbjct: 314 EGRLWW 319


>gi|66044608|ref|YP_234449.1| PP-loop [Pseudomonas syringae pv. syringae B728a]
 gi|63255315|gb|AAY36411.1| PP-loop [Pseudomonas syringae pv. syringae B728a]
          Length = 445

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 105/309 (33%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +   AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLYLLAELASRETLPALN--AIHVHHGLQPAADAWPEHCQQVCRTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   L  AAR+ARY+  SE  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRLQV-EPGASLEQAARQARYSAFSE--RLGEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R  +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPDQRVL---GRGRLVRPLLDMSRMQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260
           +R  V  +                  +  A  +L    L     +  A S   L +    
Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIAHAQAATSFAWLGLPVLS 261

Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                   +      LR   A          +   E +             +    + R 
Sbjct: 262 LGPIAALSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDAGPLWRLADGTLHRA 320

Query: 313 ANFLWITRA 321
              LW   A
Sbjct: 321 QGCLWWVPA 329


>gi|306826400|ref|ZP_07459714.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes ATCC 10782]
 gi|304431395|gb|EFM34390.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes ATCC 10782]
          Length = 428

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H+L+AVSGG DSM LL  L+         KI+     V+H  R  +  E  Y+     
Sbjct: 20  HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDLEEAYLKCWAK 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I   V +++          AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 77  KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R RVR       L  L  +  +F     ++    ++L   +  +          +   
Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239

Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300
              ++ ++LL+       G   L        +++  +++ K+G
Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279


>gi|294673632|ref|YP_003574248.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23]
 gi|294473514|gb|ADE82903.1| tRNA(Ile)-lysidine synthetase [Prevotella ruminicola 23]
          Length = 433

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 140/363 (38%), Gaps = 34/363 (9%)

Query: 6   IESVRFFVR--SLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  VR F+    L+Y   + LV +SGG+DS+ LL+ L  +         +  A   +  L
Sbjct: 2   LNKVRKFIEREKLLYRYDLHLVGLSGGADSVALLLILKDL-------GYRIEAAHCNFRL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R E +  + ++V ++C +  I   V+ +   +     +  +  AAR+ RY    +  + I
Sbjct: 55  RGEESDRDEQFVRNLCKQHDIPLHVIHFDTKEYAALHKVSIEMAARDLRYGYFRQLCQDI 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +  AH  DD +ET+ M   R     G+       T +   N  + RP L   R++I
Sbjct: 115 GATDVCIAHHRDDAVETLMMNLSRGAGIHGL-------TGIRPKNDIVRRPLLCINRQEI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             +L      +  D SN +    R ++R  V  +        M         +  A  + 
Sbjct: 168 LEYLDSIGQPYVTDSSNLEADVLRNKLRLMVLPLLEEIAPGAMANIYKTANYLREAEEVY 227

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KS 296
             K           IS +    DS +   +  +                 E+++  + ++
Sbjct: 228 NKKIEDYKDN---FISDNKFYKDSDITPSMPSILHEWLS--PFGFNSTQTEQILDCMNET 282

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG---RYQFQNLSDSLIQ 353
           G+    +  R+V+DR     +    + +    +  PE  T  D     ++F+  +D+ + 
Sbjct: 283 GREFLSATHRLVVDRE---FFEVEPITDPIKPLKIPETGTYRDEDQTAFKFEITTDTTVS 339

Query: 354 IGP 356
             P
Sbjct: 340 REP 342


>gi|225849954|ref|YP_002730188.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1]
 gi|254789038|sp|C0QU23|TILS_PERMH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225646259|gb|ACO04445.1| tRNA(Ile)-lysidine synthase [Persephonella marina EX-H1]
          Length = 452

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 128/347 (36%), Gaps = 35/347 (10%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +E+V+ +  SL+     ILVA SGG DS  L   L           I      ++H L
Sbjct: 5   KFLEAVKKY--SLISEGDRILVAFSGGIDSTVLTYLLIKFRDHLKISDIYL--AHLNHSL 60

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
           R+ + ++ R+  D   +  +              K +  +   ARE RY+   +  +  +
Sbjct: 61  RKESDEDQRFCEDFAKKYGLEIFTKKVDIKSLAEKEKKSIEQKAREERYSFFRKVMEERS 120

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              + T H   D +ET+ M   +   +      G+      + +  I RP     ++ I 
Sbjct: 121 INRLATGHHLSDLVETMIMWFIQGNRK------GIKGFRPKERD--IIRPLYLINKDQIE 172

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNN 232
           ++  ++ I +  D +N +  F R R+R  +          L    L +  F  L    + 
Sbjct: 173 NYAREKGIEYRIDITNFETDFLRNRIRHNIIPHIKGINPSLEGSLLTLSYFLSL---DDQ 229

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            +     K     +   I + +++L  D  L++  ++       G    P YR +  +M 
Sbjct: 230 YLEEESEKISQKFLNGKIEL-EELLVYDKALVYRAIQNWIYRKTGVY--PSYRQIMDIME 286

Query: 293 FL---KSGKRGCVSIGRVVIDRRANFLWIT--RAVRNLPTLILYPEE 334
            +   +  K   +S    +I R  + L+I   +         + P E
Sbjct: 287 IIEKKEGTKSIRLSPEYNLIRRY-STLYIEKVKEKTEPYQYRIKPGE 332


>gi|170017773|ref|YP_001728692.1| ATPase [Leuconostoc citreum KM20]
 gi|169804630|gb|ACA83248.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Leuconostoc citreum KM20]
          Length = 435

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 141/342 (41%), Gaps = 35/342 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I  +   +R   + A I+VAVSGG DS+ LL AL   L D      K     V++ LR+ 
Sbjct: 2   INKIDEQLRRYAWEATIIVAVSGGVDSVVLLHALRQYLPD-----TKLVVAHVNYHLRKE 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +  +  +V  + +  + A   + W    P   +   ARE RY   +  A       I+ A
Sbjct: 57  SDGDALFVRQLATTYQAAFEQIDWSIM-PSHAVEEQARELRYRFFARLAGQYRTKTIVVA 115

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +DQ ETV ++  R    + +    +   +       + RPFL   ++ + ++  Q +
Sbjct: 116 HHANDQAETVLLKLIRGGRLEQLAGMSVKKRL-------VLRPFLGITKQQLITYAQQHH 168

Query: 186 ISWCEDPSNTDDRFE-RVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
           +SW ED +N D  +  R  +R  V          +   +  F     + +  ++    +Y
Sbjct: 169 LSWREDDTNFDATYTPRNLLRNIVIPELKTINPQVVNHVNSFAKQIAEQSELISFQAKQY 228

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           L +  +    I    L          + ++A +   ++     + ++++   L + K+  
Sbjct: 229 LPLLTKDWTKIPDLWLE---------VTLAAYLHEQKVYRFKQQQLKQIHQLLINEKKPT 279

Query: 302 VSI---GRVVIDRRANFLWITR------AVRNLPTLILYPEE 334
            SI     VV+ +    +++ +       V++LPTL+L   +
Sbjct: 280 GSIQLSHTVVLIKNYRQVYLKKTTEIPNTVQDLPTLMLKLNQ 321


>gi|332969142|gb|EGK08174.1| tRNA(Ile)-lysidine synthase [Kingella kingae ATCC 23330]
          Length = 425

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 133/345 (38%), Gaps = 30/345 (8%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           SV  F   L  +   H+ VA+SGG DS+ LL       S         SA+ + H L   
Sbjct: 6   SVDLFAAQLPDLRGKHVCVALSGGVDSVVLLHLFAQAQSSLQLT--SLSALHIHHGLNAQ 63

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A     + +D  S L I  +  S +      G+ AAAR+ARY + +      NA  I  A
Sbjct: 64  ADQWQAFCADYASSLHIPFTAQSVRIQTNGLGIEAAARQARYQIFA----QQNADFIALA 119

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLL 182
           H  +DQ+ET ++ + R  + + +        +  +     L + RP L   RE I  +  
Sbjct: 120 HHQNDQIETFWLAALRGGSLRALSAMPKMRDLPRENRAGCLTLLRPLLPFTREQIVQYAQ 179

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----I 238
           Q  + +  D SN +  F R  VR  +    +       +        +    A+L     
Sbjct: 180 QNQLDFVYDNSNDNPNFLRNWVRLHLLPSIVQKQPAHAQHLLHSIATLQEERALLDEIIA 239

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
             +  +   ++   SQ +    S    + +    A    ++  P   S+ +    L+  +
Sbjct: 240 EDWQRIQHNAL--FSQRLWQTLSPARQHQMLHQFA-QRNELGAPSKSSLHQFAQQLRHAQ 296

Query: 299 RGCVSI--GRVVIDRR----------ANFLWITRAVRNLPTLILY 331
            G  ++  GR V+ R           A++ W+ R   NLP  + +
Sbjct: 297 SGEWTLPRGRAVLYRDYLFAIPHDLGASWTWLHRTQTNLPNELRW 341


>gi|329848733|ref|ZP_08263761.1| tRNAIle-lysidine synthetase [Asticcacaulis biprosthecum C19]
 gi|328843796|gb|EGF93365.1| tRNAIle-lysidine synthetase [Asticcacaulis biprosthecum C19]
          Length = 410

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 97/392 (24%), Positives = 159/392 (40%), Gaps = 21/392 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  +    +  F   L     I VAVSGG DS+ LL  L        +G+       VDH
Sbjct: 1   MIANRPTVISDFSTLLNGDGPIGVAVSGGGDSVALLYQLAD------WGRRPLHVFHVDH 54

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L+  +      V+     L+++ + ++W   KP TG+ AAAR AR+AL++E A+     
Sbjct: 55  ALQADSGLWADAVAAHAKHLKLSFTRLTWSGDKPTTGISAAARGARHALLAEAARAAGIK 114

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           ++  AHT DD  E  YMR Q                  +   +++ RP L  RR D+R +
Sbjct: 115 VVCLAHTCDDVAEAAYMR-QHGSNVGTPQTWSPSPVWPHGRGVFLCRPLLSARRADLRQY 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L+ R +SW +DP+N + +  RV+ R+ +       L L               V  L+  
Sbjct: 174 LMDRKLSWIDDPANENAKSLRVQARQAL-------LGLTSAPLPPPVRLPRGEVETLLHD 226

Query: 241 YLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
                   ++    D    + +    +LL  +A   GG   LP    +E +   L  G+ 
Sbjct: 227 PEGWSALGLLRFKADAFYQLPNDTALHLLATAAVCAGGGDRLPRRHKVETLYESLADGRS 286

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSY 359
              ++    I +   F+ + R   ++      P +  +WDGR+Q       ++  G    
Sbjct: 287 H--TLAGARIRQAGGFIHVLREAGDI-GRNAEPGQGDLWDGRFQLL---GRVVATGRDRG 340

Query: 360 RKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
           R  D        +     +S+P+ E   P LA
Sbjct: 341 RLDDRDRAFLRTLPPDLRASLPAMEVSGPHLA 372


>gi|208779899|ref|ZP_03247243.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           novicida FTG]
 gi|208744354|gb|EDZ90654.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           novicida FTG]
          Length = 398

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+HI++  SGG DS  LL     +        I   AI ++H L   +     +    C
Sbjct: 16  SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            R  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++ R     G+        + +     + RP L+  + +I  F    NIS+  D SN D 
Sbjct: 129 QAIRGSGLAGLAGIPYYKELQHGG---VLRPLLKYSKIEIEEFAKLNNISYIYDDSNEDI 185

Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           ++ R  +R  +  I       +   + +  ++  + NN +  L+ + L    +    I  
Sbjct: 186 KYRRNLIRNQIIPILQQVNPNIGQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245

Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278
           +++ +D  +   LL +       Q
Sbjct: 246 ELIKLDDDIQKSLLHLWFKQNTQQ 269


>gi|193216339|ref|YP_001997538.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC
           35110]
 gi|193089816|gb|ACF15091.1| tRNA(Ile)-lysidine synthetase [Chloroherpeton thalassium ATCC
           35110]
          Length = 323

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 131/344 (38%), Gaps = 44/344 (12%)

Query: 10  RFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAK 67
           R  V+SL+     +L+A SGG+DSM LL  L  V     F  ++ +A   +  LR E + 
Sbjct: 11  RLRVKSLIKKNEKVLLAFSGGADSMALLSLLKKVQP---FLNLQLAAAHCNFGLRGEESD 67

Query: 68  DEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            +  +    C  L I    + +       + +  +  AAR  RY    + A+    + I 
Sbjct: 68  ADETFCQMQCDALEIPIFTIHFDTKHFAQQHKMSIEEAARHLRYNFFYKLAEIERCSKIA 127

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  +D  ET+     R  +  G+         +   +  + RP L  +R ++  +L  
Sbjct: 128 TAHHANDNAETILFNLFRGSSLLGL-------KGIRVKHEKLVRPLLGFKRAELIEYLES 180

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           + + +  D +N  D ++R  +R  V  +       K K   +L     N     +  +L 
Sbjct: 181 QQLPYRLDLTNLSDAYDRNFIRLKVIPLIEERF--KHKLLPNLLRLSENGTE--LDVFLN 236

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR---SMERVMLFLKSGKRG 300
            H   +   SQ+ LN                   Q+ +P  +     E+  +F ++    
Sbjct: 237 AHFEKL--TSQNGLNPFE---------------QQLHVPSLQMLSKFEQKEIFKRALACF 279

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344
            +      + R  + L      +    +IL  +   +W G++ +
Sbjct: 280 SIDPNANRLSRLCDLL----ETQAGRKVILSKDLEVIWKGKWLY 319


>gi|300775911|ref|ZP_07085771.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC
           35910]
 gi|300505461|gb|EFK36599.1| possible tRNA(Ile)-lysidine synthetase [Chryseobacterium gleum ATCC
           35910]
          Length = 449

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/278 (24%), Positives = 117/278 (42%), Gaps = 18/278 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+ I  ++  V         L+AVSGG DSM L         +    K +F    +++ L
Sbjct: 5   LTFINQLKNLVHE-PEKHTFLLAVSGGVDSMVLASLFRDFGQEIQDSKFRFQVAHINYKL 63

Query: 63  RET-AKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           R   +  + + V D C +  I   +  VS K+ KP+  +   ARE RY       +    
Sbjct: 64  RGNDSDLDQKTVQDFCEKNHIKFHLYEVSEKDQKPENSIQLWARELRYRFFKTIQEKEKL 123

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++TAH  +DQLET  +        K  G++G+     +D N  I RP L   +++I  
Sbjct: 124 EFLVTAHHLNDQLETFIINLS-----KAAGINGLSGIPSHDNN--ILRPLLNFSKKEIYQ 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---- 235
           F    +I + ED SN  + + R ++R  +  + +      +  F+     +N        
Sbjct: 177 FAELNHIEFREDLSNKKNDYLRNKIRNQIVPMLMETNDHFLDNFRKSSSLLNQTKDFVQK 236

Query: 236 --MLIPKYLTVHMRSIIAISQDILNIDSTL-LFYLLRV 270
               I   LTV  +    +S++ LN +S    F +L+ 
Sbjct: 237 QIQEIENNLTVFNQDYKILSKEKLNQESDFVKFEILKK 274


>gi|94987642|ref|YP_595743.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS9429]
 gi|94991508|ref|YP_599607.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS2096]
 gi|94541150|gb|ABF31199.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS9429]
 gi|94545016|gb|ABF35063.1| tRNA(Ile)-lysidine synthetase TilS [Streptococcus pyogenes
           MGAS2096]
          Length = 428

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 113/283 (39%), Gaps = 24/283 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H+L+AVSGG DSM LL  L+         KI+     V+H  R  +  E  Y+     
Sbjct: 20  HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I   V +++          AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 77  KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R RVR       L  L  +  +F     ++    ++L   +  +          +   
Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239

Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300
              ++  +LL+       G   L        +++  +++ K+G
Sbjct: 240 QSKSIQHFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279


>gi|293375859|ref|ZP_06622125.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909]
 gi|325841824|ref|ZP_08167484.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1]
 gi|292645504|gb|EFF63548.1| tRNA(Ile)-lysidine synthetase [Turicibacter sanguinis PC909]
 gi|325489854|gb|EGC92206.1| tRNA(Ile)-lysidine synthetase [Turicibacter sp. HGF1]
          Length = 459

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 59/264 (22%), Positives = 105/264 (39%), Gaps = 12/264 (4%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ++VAVSGG+DSM LL  L  +   +    +      V+H  RE +  +   V+ 
Sbjct: 15  LEKNKSVVVAVSGGADSMALLNLLVEI---KELYNLHLVVAHVNHKKRENSDLDEVLVNK 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +     + + V               AR  RY      A    A  I+TAH  DD LET 
Sbjct: 72  IALENGLDYEVYYLPKCLTNENFHEYARRERYNFFKRVAANYKADCIVTAHHADDHLETQ 131

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R          GL G+   + Y   L I RP +   ++DI  +  +  I + ED SN 
Sbjct: 132 IYRLLYHSTV--SGLIGIEPIVEY-CGLKIIRPLIEVTKDDIYKYCSESRIEYREDESNQ 188

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----HMRSII 250
            D + R R+R+++        +   +  + +  +++   A    +   +      ++ + 
Sbjct: 189 SDVYTRNRIRKYIIPALAEETFSVYEHSRSISEQLSEDEAFFNLQVDQLMNEVSEIKGVF 248

Query: 251 AISQDILN-IDSTLLFYLLRVSAA 273
            +S+  +N +  +L   L++    
Sbjct: 249 KVSRSFINSLPKSLSRRLIKRILQ 272


>gi|315224848|ref|ZP_07866669.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga ochracea F0287]
 gi|314945251|gb|EFS97279.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga ochracea F0287]
          Length = 428

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 133/357 (37%), Gaps = 42/357 (11%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIA 83
           A+SGG DS+ L   L++         I+      +  LR   + D+  +V    + L + 
Sbjct: 16  AISGGIDSVVLAHLLYT-------HGIELLLAHCNFQLRGTESDDDEAFVRTFAAELGVP 68

Query: 84  HSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             V  +   +     Q     AARE RY    E A T     I TAH  +D LET ++  
Sbjct: 69  LQVKRFDTHQYASFHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNLETFFINL 128

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+         + +    I RP L+  R+ I  +   + + W ED SN  +++
Sbjct: 129 SRGSGLEGL-------LGIPEEKDTIIRPLLQFSRQQIYEYAQAKRLKWREDSSNETNKY 181

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-----IAISQ 254
            R  +R  +           ++ F   +  ++ +   +      +          I I  
Sbjct: 182 VRNVIRHDIIPKLALVHPNYLENFNQTQEYLHQSARFIDFYIEKLKETCFEGHNPIQIDI 241

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
           + L     L F L ++      G +     + ++ ++L  ++GK+        ++ +   
Sbjct: 242 EKLQAVPELDFVLHKLFYPYGFGNV-----KDLKNLLLNAEAGKQVLSPTH--ILIKDNT 294

Query: 315 FLWIT-RAVRNLPTLILYPEETTVWD----------GRYQFQNLSDSLIQIGPQSYR 360
            LW+     +   +L++  +   V+D          G+ + +N   + I +     +
Sbjct: 295 CLWLKPNEAKRSLSLLISEDMAEVYDPVHLRFEFIEGKVKVKNPIPTEIYVDADKLQ 351


>gi|330975382|gb|EGH75448.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 445

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 111/308 (36%), Gaps = 18/308 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +   AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQTAADGWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   L  AAR+ARY+  SE  + +   +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVQV-EPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R+ +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L    L     +  A S   + +    
Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIANAQAATSFTWVGLPVLS 261

Query: 264 LFYLLRVSAAICGGQI--------SLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  +  +SAA     +         LP          +            +    + R  
Sbjct: 262 LGPIAALSAARQRNALRHWLSPLTRLPDTDHWAGWEALRDAAHDAGPLWRLADGTLHRAQ 321

Query: 314 NFLWITRA 321
           N +W   A
Sbjct: 322 NCIWWVPA 329


>gi|114562464|ref|YP_749977.1| tRNA(Ile)-lysidine synthetase [Shewanella frigidimarina NCIMB 400]
 gi|114333757|gb|ABI71139.1| tRNA(Ile)-lysidine synthetase [Shewanella frigidimarina NCIMB 400]
          Length = 488

 Score =  206 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 118/317 (37%), Gaps = 29/317 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +++A SGG DS  L   L ++        I    I V H L   A   V++     +  
Sbjct: 40  KLVLAYSGGVDSEVLACGLSALA--HKHPHIACLLIHVHHGLSANADIWVQHCITRANHY 97

Query: 81  RIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           ++   +   K  K P+  L A AR+ARY     +       +++TAH  DDQLET+ +  
Sbjct: 98  QLPVQIERVKVEKGPRQSLEAQARDARYQAFDRYL--NPGDILLTAHHQDDQLETLLLAL 155

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R    KG+   G           W+ RP L   R+ I  F  Q+ +S  ED SN DD F
Sbjct: 156 KRGQGPKGLAAMGAIQAY---KQAWLVRPLLDISRDQIEQFAAQKQLSHIEDESNQDDSF 212

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD---- 255
           +R  +R  +    L   +  +         +      +I   ++  +   + +  D    
Sbjct: 213 DRNFLRLDIIPR-LKQRWPSIATTAGRSAALCAEQQQVIDDEVSHRLPEWLIVPGDTNAL 271

Query: 256 -----------ILNIDSTLLFYLLRVSAAICGGQISLPG---YRSMERVMLFLKSGKRGC 301
                         + +     L R     CG  ++LP     + +   +L  K      
Sbjct: 272 MTESTGFKLTGFGQLSAAWQALLFRGYLIYCG--VNLPSQAQLQQILSQLLAAKDDANIS 329

Query: 302 VSIGRVVIDRRANFLWI 318
           +  G   + R A   ++
Sbjct: 330 IQWGDYQVKRFAGIAYV 346


>gi|53712709|ref|YP_098701.1| putative cell-cycle protein [Bacteroides fragilis YCH46]
 gi|61216469|sp|Q64WF9|TILS_BACFR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52215574|dbj|BAD48167.1| putative cell-cycle protein [Bacteroides fragilis YCH46]
          Length = 435

 Score =  206 bits (525), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 32/275 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE  + F  +      +LV +SGG+DS+ LL  L S+            A   +  LR+ 
Sbjct: 10  IEKEKLFCLN----DKVLVTLSGGADSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58

Query: 65  TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C      L I H   +   +K    +  AARE RY       K   A+
Sbjct: 59  ESDRDEAFVRRLCHESGVLLHIEHFDTTQYATKKHISIEMAARELRYEWFETLRKQREAS 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I TAH  DD +ETV +   R     G+         +   N  I RP L   RE+I ++
Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L   +  +  D +N  D + R ++R       + +      ++        D     N +
Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +     + LT     I A+ Q+   +   +LF +L
Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264


>gi|70728575|ref|YP_258324.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5]
 gi|68342874|gb|AAY90480.1| tRNA(Ile)-lysidine synthetase [Pseudomonas fluorescens Pf-5]
          Length = 438

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 99/257 (38%), Gaps = 8/257 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L  +           SA+ + H L+  A     +    C  L + 
Sbjct: 23  VAFSGGLDSTVLLHLLAGLAQHHRLPP--LSAVHIHHGLQAAADAWPEHCQAFCDALGVP 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  +       L  AAREARY   +    T +  +++TA   DDQ ET+  R  R  
Sbjct: 81  LQVLRVQVPA-GASLERAAREARYGAFARL--TASGEVLLTAQHRDDQAETLLFRLLRGA 137

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +    +  + RP L   R +++ +  +  +SW EDPSN D ++ R  
Sbjct: 138 GVRGLSAMPSERPL---GDGQLLRPLLDVSRAELQCYAAEHQLSWVEDPSNADHQYSRNY 194

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V                     +N A  +L    +     +  A     L++ S  
Sbjct: 195 LRHQVMPAITARWPQAALSMSRSAAHLNEAQGLLDELAIMDLDAARGASVWPWLDLPSLA 254

Query: 264 LFYLLRVSAAICGGQIS 280
           L  L  +S A     +S
Sbjct: 255 LAPLQSLSGARQRNALS 271


>gi|260437759|ref|ZP_05791575.1| tRNA(Ile)-lysidine synthase [Butyrivibrio crossotus DSM 2876]
 gi|292809781|gb|EFF68986.1| tRNA(Ile)-lysidine synthase [Butyrivibrio crossotus DSM 2876]
          Length = 457

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 94/252 (37%), Gaps = 22/252 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     ++V +SGG+DS+ L   L  +   RS       A+ V H +R E A  ++ +  
Sbjct: 15  LDGCGSVIVGLSGGADSVALFHVLREL---RSRYGFSIIAVHVHHGIRGEEADRDLDFCR 71

Query: 75  DVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++C R  +        +     +       A R+ RY      A     + I  AH  +D
Sbjct: 72  NLCRRYGVELREFFYDIPKLAKELSLSPEEAGRKVRYDSFRSVASEYENSRIAVAHHGND 131

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           + ETV     R    KG+         +  +   I RP L   + DI  +L + +  +C 
Sbjct: 132 RAETVIFNMTRGTGMKGL-------RGIVPMRDNIIRPLLCVTKADILGYLDEIHQDYCL 184

Query: 191 DPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           D +N  + + R R+R  +           +  +     K  +L   V N +  +  K   
Sbjct: 185 DSTNESNDYSRNRIRNVILPELAKINSNAVSNICSMADKMMELNDFVENYIDDMYDKCAV 244

Query: 244 VHMRSIIAISQD 255
              R I+    D
Sbjct: 245 EDERGILLKRPD 256


>gi|222152214|ref|YP_002561389.1| PP-loop family protein [Streptococcus uberis 0140J]
 gi|222113025|emb|CAR40337.1| PP-loop family protein [Streptococcus uberis 0140J]
          Length = 427

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 124/326 (38%), Gaps = 32/326 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  FF         +L+AVSGG DSM LL  LH         +I    + V+H  R+ 
Sbjct: 11  VKAKHFF----NNHTKVLIAVSGGVDSMNLLHFLHIYQEK---FEILIGIVHVNHKQRQE 63

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++ E  Y+ +   +  I     S+K         A AR  RY    +  +    T ++TA
Sbjct: 64  SEIEESYLIEWAKKHNIPIYTSSFKGKFT----EAKARTFRYDFFKKIMQEEGYTALVTA 119

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ ET+ MR  R    K   LSG+ +   +     + RPFL  ++          N
Sbjct: 120 HHADDQAETILMRIFRGSRLKY--LSGIKEIQSFGTG-ELIRPFLGIQKSQFP------N 170

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I   ED SN ++ + R R+R       +  +  +   F+   + +      LI     + 
Sbjct: 171 IFHFEDQSNFENYYFRNRIRNH----YMKEIEQENPNFKTSLLSLAKETEYLIDALDDLT 226

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
                      L   +   FYLL+           +   +  + V+  L + K G   + 
Sbjct: 227 KEIDFQQRYQFLEQTNATQFYLLQKYINTF--PDLMLTRQQFDNVLHLLTTKKEGVFPL- 283

Query: 306 RVVIDRRANFLWITRAVRNLPTLILY 331
                +   FL +TR    +  + L 
Sbjct: 284 -----KNGYFLKLTRDFSVIEKIGLE 304


>gi|258614287|ref|ZP_05712057.1| hypothetical protein EfaeD_01112 [Enterococcus faecium DO]
          Length = 343

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L  V     F       + ++H LRE + +E  Y+   
Sbjct: 31  QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 88  CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+ +   +     + RP L   +ED+ ++  +  + + ED +N  
Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFATG-RLIRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           ++ FQ    ++      +I KY+   +   +   ++ 
Sbjct: 204 LDIQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 263 FRFSAEMI 270


>gi|60680868|ref|YP_211012.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC
           9343]
 gi|60492302|emb|CAH07067.1| putative ATP-binding PP-loop protein [Bacteroides fragilis NCTC
           9343]
          Length = 435

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 32/275 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE  + F  +      +LV +SGG+DS+ LL  L S+            A   +  LR+ 
Sbjct: 10  IEKEKLFCLN----DKVLVTLSGGADSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58

Query: 65  TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C      L I H   +   +K    +  AARE RY       +   A+
Sbjct: 59  ESDRDEAFVRRLCHESGVLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREAS 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I TAH  DD +ETV +   R     G+         +   N  I RP L   RE+I ++
Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L   +  +  D +N  D + R ++R       + +      ++        D     N +
Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +     + LT     I A+ Q+   +   +LF +L
Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264


>gi|69245448|ref|ZP_00603443.1| PP-loop [Enterococcus faecium DO]
 gi|257879859|ref|ZP_05659512.1| PP-loop family protein [Enterococcus faecium 1,230,933]
 gi|257891700|ref|ZP_05671353.1| PP-loop family protein [Enterococcus faecium 1,231,410]
 gi|260559532|ref|ZP_05831713.1| pp-loop family protein [Enterococcus faecium C68]
 gi|314938210|ref|ZP_07845510.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a04]
 gi|314943105|ref|ZP_07849904.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133C]
 gi|314949302|ref|ZP_07852645.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0082]
 gi|314952235|ref|ZP_07855250.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133A]
 gi|314992093|ref|ZP_07857543.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133B]
 gi|314996276|ref|ZP_07861332.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a01]
 gi|68195830|gb|EAN10266.1| PP-loop [Enterococcus faecium DO]
 gi|257814087|gb|EEV42845.1| PP-loop family protein [Enterococcus faecium 1,230,933]
 gi|257828060|gb|EEV54686.1| PP-loop family protein [Enterococcus faecium 1,231,410]
 gi|260074631|gb|EEW62952.1| pp-loop family protein [Enterococcus faecium C68]
 gi|313589520|gb|EFR68365.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a01]
 gi|313593307|gb|EFR72152.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133B]
 gi|313595630|gb|EFR74475.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133A]
 gi|313598164|gb|EFR77009.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133C]
 gi|313642406|gb|EFS06986.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0133a04]
 gi|313644308|gb|EFS08888.1| tRNA(Ile)-lysidine synthetase [Enterococcus faecium TX0082]
          Length = 481

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L  V     F       + ++H LRE + +E  Y+   
Sbjct: 28  QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 84

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 85  CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+ +   +     + RP L   +ED+ ++  +  + + ED +N  
Sbjct: 144 MKIVRGGQLNT--FSGIKEVQPFATG-RLIRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 200

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           ++ FQ    ++      +I KY+   +   +   ++ 
Sbjct: 201 LDIQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 259

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 260 FRFSAEMI 267


>gi|258513582|ref|YP_003189804.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777287|gb|ACV61181.1| tRNA(Ile)-lysidine synthetase [Desulfotomaculum acetoxidans DSM
           771]
          Length = 473

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 132/323 (40%), Gaps = 28/323 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R +     IL+AVSGG DS+ +L  L  +   R    I      ++H  R E +  +  +
Sbjct: 16  RMVNKGDKILLAVSGGPDSVAMLDVLFCL---RHDLGISLHIAHLNHMFRGEESLGDAEF 72

Query: 73  VSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V ++  R  +  +V          K       AAR  RY+ + E A   +A+ I  AH  
Sbjct: 73  VRELAVRYNLPVTVRHINVPSFMEKTGLSSQPAARTVRYSFLDETAAQESASRIALAHHA 132

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV +   R       G +G+   +    N +I RP L  +R+DI  +  ++N+ W
Sbjct: 133 DDQAETVMLHFLRGS-----GAAGLRGMLPVRDNFYI-RPMLCLKRQDIEDYCKKKNLRW 186

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAM----LIPK 240
             D SN    + R ++R ++  +      + L   + +  D+  +  + + +        
Sbjct: 187 RVDSSNLKTDYRRNKIRMYLLPLLEKEYNNNLTATLNRLADIFREEEDYLELMTRNEYNN 246

Query: 241 YLTVHMRSIIAIS-QDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSM-ERVMLFLKSG 297
              +     I ++ +    +   L   +LR+    I GG   L  +  + + V+L     
Sbjct: 247 LTVLKSAGEICLNLKGFQQVPLALQRRILRLAWREITGGFRDL-AFEQLGKAVILLTNHV 305

Query: 298 KRGCVSIGR--VVIDRRANFLWI 318
             G +   R   V+ R  +F +I
Sbjct: 306 GSGSLEFPRDVKVVKRYDSFSFI 328


>gi|253563316|ref|ZP_04840773.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5]
 gi|251947092|gb|EES87374.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 3_2_5]
          Length = 435

 Score =  205 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 32/275 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE  + F  +      +LV +SGG+DS+ LL  L S+            A   +  LR+ 
Sbjct: 10  IEKEKLFCLN----DKVLVTLSGGADSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58

Query: 65  TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C      L I H   +   +K    +  AARE RY       +   A+
Sbjct: 59  ESDRDEAFVRRLCHESGVLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREAS 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I TAH  DD +ETV +   R     G+         +   N  I RP L   RE+I ++
Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L   +  +  D +N  D + R ++R       + +      ++        D     N +
Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +     + LT     I A+ Q+   +   +LF +L
Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264


>gi|265762798|ref|ZP_06091366.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16]
 gi|263255406|gb|EEZ26752.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. 2_1_16]
          Length = 435

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 32/275 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE  + F  +      +LV +SGG+DS+ LL  L S+            A   +  LR+ 
Sbjct: 10  IEKEKLFCLN----DKVLVTLSGGADSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58

Query: 65  TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C      L I H   +   +K    +  AARE RY       +   A+
Sbjct: 59  ESDRDEAFVRRLCHESGVLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREAS 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I TAH  DD +ETV +   R     G+         +   N  I RP L   RE+I ++
Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L   +  +  D +N  D + R ++R       + +      ++        D     N +
Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +     + LT     I A+ Q+   +   +LF +L
Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264


>gi|257882585|ref|ZP_05662238.1| PP-loop family protein [Enterococcus faecium 1,231,502]
 gi|293563198|ref|ZP_06677654.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1162]
 gi|293570120|ref|ZP_06681200.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1071]
 gi|294618633|ref|ZP_06698172.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1679]
 gi|294623709|ref|ZP_06702542.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium U0317]
 gi|257818243|gb|EEV45571.1| PP-loop family protein [Enterococcus faecium 1,231,502]
 gi|291587492|gb|EFF19376.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1071]
 gi|291595152|gb|EFF26490.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1679]
 gi|291596924|gb|EFF28142.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium U0317]
 gi|291604848|gb|EFF34326.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1162]
          Length = 484

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L  V     F       + ++H LRE + +E  Y+   
Sbjct: 31  QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 88  CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+ +   +     + RP L   +ED+ ++  +  + + ED +N  
Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFATG-RLIRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           ++ FQ    ++      +I KY+   +   +   ++ 
Sbjct: 204 LDIQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 263 FRFSAEMI 270


>gi|118497835|ref|YP_898885.1| ATPase [Francisella tularensis subsp. novicida U112]
 gi|194323808|ref|ZP_03057584.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           tularensis subsp. novicida FTE]
 gi|166988059|sp|A0Q7B6|TILS_FRATN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|118423741|gb|ABK90131.1| predicted ATPase of the PP-loop superfamily [Francisella novicida
           U112]
 gi|194322172|gb|EDX19654.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           tularensis subsp. novicida FTE]
          Length = 398

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+HI++  SGG DS  LL     +        I   AI ++H L   +     +    C
Sbjct: 16  SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            R  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQPYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++ R     G+        + +     + RP L+  + +I  F    NIS+  D SN D 
Sbjct: 129 QAIRGSGLAGLAGIPHYKELHHGG---VLRPLLKYSKIEIEEFAKLNNISYIYDDSNEDI 185

Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           ++ R  +R  +  I       +   + +  ++  + NN +  L+ + L    +    I  
Sbjct: 186 KYRRNLIRNQIIPILQQVNPNIGQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245

Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278
           +++ +D  +   LL +       Q
Sbjct: 246 ELIKLDDDIQKSLLHLWFKQNTQQ 269


>gi|224539103|ref|ZP_03679642.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519267|gb|EEF88372.1| hypothetical protein BACCELL_04004 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 436

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 109/280 (38%), Gaps = 28/280 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +  I       +       ILV +SGG+DS+ LL  L ++            A   + 
Sbjct: 1   MNIKKIAQYIDQEKLFTREDKILVTLSGGADSVALLRLLLAM-------GYTCEAAHCNF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR + +  +  +V ++C +L +   V  ++      K    +  AARE RYA   +   
Sbjct: 54  HLRGDESVRDEMFVRELCLQLEVPLHVQHFQTTEEAEKRHISIEMAARELRYAWFEQLRL 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A +I  AH  DD +ET+ +   R     G+         +   N  I RP L   R+
Sbjct: 114 QQGANVIAVAHHKDDSVETLLLNLIRGTGINGL-------LGIRPKNGNIVRPLLCLDRK 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +L +   S+  D +N  D + R ++R  +  +         +        +N+A  
Sbjct: 167 EITEYLQEIGQSYVTDSTNLQDEYTRNKIRLNLLPLMQEINPSVKENLLRTAEHLNDAA- 225

Query: 236 MLIPKYLTVHMRSIIAISQDIL-------NIDSTLLFYLL 268
            L+ K      +  +   Q IL       +   TLLF +L
Sbjct: 226 -LLYKKGIEEGKQKVQTEQGILISVLLQESAPETLLFEIL 264


>gi|50913357|ref|YP_059329.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS10394]
 gi|61217204|sp|Q5XEL7|TILS_STRP6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50902431|gb|AAT86146.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes MGAS10394]
          Length = 428

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 27/283 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H+L+AVSGG DSM LL  L+         KI+     V+H  R  +  E  Y+     
Sbjct: 20  HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I   V +++          AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 77  KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R RVR       L  L  +  +F     ++    ++L   +  +          +   
Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239

Query: 259 IDSTLLFYLLRVSAAICGGQISL----PGYRSMERVMLFLKSG 297
              ++ ++LL+       G   L      +  + +++   K G
Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQIAKQG 279


>gi|19745210|ref|NP_606346.1| cell-cycle protein [Streptococcus pyogenes MGAS8232]
 gi|61217382|sp|Q8P322|TILS_STRP8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|19747299|gb|AAL96845.1| putative cell-cycle protein [Streptococcus pyogenes MGAS8232]
          Length = 428

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 112/283 (39%), Gaps = 27/283 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H+L+AVSGG DSM LL  L+         KI+     V+H  R  +  E  Y+     
Sbjct: 20  HRHVLIAVSGGVDSMNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAK 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I   V +++          AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 77  KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIRGSRLRY--LSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R RVR       L  L  +  +F     ++    ++L   +  +          +   
Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239

Query: 259 IDSTLLFYLLRVSAAICGGQISL----PGYRSMERVMLFLKSG 297
              ++ ++LL+       G   L      +  + +++   K G
Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQIAKQG 279


>gi|313675080|ref|YP_004053076.1| tRNA(ile)-lysidine synthetase [Marivirga tractuosa DSM 4126]
 gi|312941778|gb|ADR20968.1| tRNA(Ile)-lysidine synthetase [Marivirga tractuosa DSM 4126]
          Length = 438

 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 20/264 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  I+    F R      H+L+A+SGG DS+ L   L             FS   ++  
Sbjct: 6   FLDYIKKESLFNRH----EHLLLAISGGLDSVVLAHLLK-------LTDFHFSMAHMNFQ 54

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR E +  + ++V ++  +L +   V   +  K +      AR+ RY       K  + +
Sbjct: 55  LRDEDSNRDEKFVRELAKKLEVEVFVKRVEIDKEKGSTQLQARDLRYDWFRRLMKDHHFS 114

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++TAH  +D LET  +   R    KG+         +  L+  I+RP L   +E I+ +
Sbjct: 115 KLLTAHHANDLLETTLLNLIRGTGIKGL-------RSILPLHHNIARPLLFASKEQIKEY 167

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
             + +I W ED SN  ++++R ++R  V  + L      +   Q   +++  A   +  +
Sbjct: 168 AEENSIEWREDVSNASEKYKRNKMRHRVIPLLLKENPNLLSGIQQTTLRL-RAAESVWDE 226

Query: 241 YLTVHMRSIIAISQDILNIDSTLL 264
            L    +  +    + + ID  +L
Sbjct: 227 KLAKIRKKYVFNRDEGIRIDRRIL 250


>gi|238922945|ref|YP_002936458.1| cell cycle protein MesJ, putative [Eubacterium rectale ATCC 33656]
 gi|238874617|gb|ACR74324.1| cell cycle protein MesJ, putative [Eubacterium rectale ATCC 33656]
          Length = 514

 Score =  205 bits (523), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 113/307 (36%), Gaps = 44/307 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLR-ETAKDEVR 71
           + +   + +LVA+SGG+DS+ LL+ L+ +             A+ V+H +R   ++++ R
Sbjct: 13  KMINNHSTVLVALSGGADSVCLLLVLNEIKRQCADELDFALEAVHVEHGIRGAESREDAR 72

Query: 72  YVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALIS--------EHAKTINA 119
           + SD+C RL I   V S    +       GL  AAR  RY              A    A
Sbjct: 73  FASDICERLNIPCHVHSVDVPQYAASHGLGLEEAARILRYEAFEKEVARILRYEAFEEGA 132

Query: 120 --------------------TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
                                ++  AH  +D  ETV  +  R    KG  LSGM   +  
Sbjct: 133 GRYPCEPANASDQKQGNSRQVVVAVAHHMEDNAETVLFQMLRGSGAKG--LSGMH-PVSV 189

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
              +   RP L   R  I  +L +   ++  D +NTD  + R ++R  V  + L      
Sbjct: 190 KNGVTYIRPLLSATRAQIEEYLKENGQAFVTDATNTDTAYSRNKLRHDVFPLLLQINDRA 249

Query: 220 MKKFQDLRVKV-------NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272
           ++   +   ++          +       ++     +I        +   L   + R   
Sbjct: 250 IEHINESAGQLAVMNDFYEQQLKEACDSMVSKKEGRVILEISRFECLHPALKSGVARECI 309

Query: 273 AICGGQI 279
            +  G++
Sbjct: 310 HLASGRL 316


>gi|330950662|gb|EGH50922.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae Cit 7]
          Length = 394

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 66/310 (21%), Positives = 107/310 (34%), Gaps = 20/310 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    +   +   AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELAGRETLPALN--AIHVHHGLQTAADAWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   L  AAR+ARY   +E  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVQV-EPAASLEQAARQARYGAFTERLRE--GEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R  +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRMQLEDYARRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L    L     +  A S   + +    
Sbjct: 202 LRNQVLPLLTSRWPQAAASLARTAHHLGEAQQLLDELALQDIANAQAATSFGWVGLPVLS 261

Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312
           L  +  +SAA     +       + R+           +            +    + R 
Sbjct: 262 LGPIAALSAARQRNAVR-HWLAPLTRLPDTDHWAGWEALRDAAQDAGPLWRLADGTLHRA 320

Query: 313 ANFLWITRAV 322
              +W   A 
Sbjct: 321 QGCIWWVPAA 330


>gi|119774292|ref|YP_927032.1| cell cycle protein MesJ [Shewanella amazonensis SB2B]
 gi|119766792|gb|ABL99362.1| cell cycle protein MesJ [Shewanella amazonensis SB2B]
          Length = 497

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 121/322 (37%), Gaps = 23/322 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + P+ +++  SGG DS  +  AL      +     +   + V H L   A    R+    
Sbjct: 25  LTPSKLVLGYSGGLDSELMACALSHYA--KKHPGTQCLLVHVHHGLSPNADTWARHCEHR 82

Query: 77  CSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +R  +   +   +  +  +  L A AR ARYA +  H       +++TAH  DDQLETV
Sbjct: 83  AARYELEFVLEKVRVKQGARLSLEAEARSARYAALMAHLAE--GDVLLTAHHQDDQLETV 140

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R    KG+   G   ++  D   +  RPFL   RE +       ++S  ED SN 
Sbjct: 141 LLALARGLGPKGLAAMGQQQSL--DDGAFQVRPFLGLSREYLEDAASALDLSHIEDESNQ 198

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D RF+R  +R  +    L + +  +        ++     ML+   ++  +  +I+    
Sbjct: 199 DTRFDRNFLRAEIIPR-LKSRWGAIGATASRSAELCAQTQMLLDDEVSERLTPLISRCPL 257

Query: 256 ILNI----------DSTLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCV 302
                                L+R    + G  +  P    ++  +      K+     +
Sbjct: 258 SHAFRLALGPVAASSRAWQAQLVRGFLEVAG--LPPPSKIQLDEALSQLFAAKADAAVSL 315

Query: 303 SIGRVVIDRRANFLWITRAVRN 324
             GR  + R   +L+      N
Sbjct: 316 RFGRTRLRRYQGWLYAETESDN 337


>gi|330721718|gb|EGG99715.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC2047]
          Length = 401

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 15/277 (5%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             A+ V H L + A D   +   VC +L +  +V   +   PQ  L    RE RY +   
Sbjct: 11  LEALHVHHGLSDYADDWAAHCQYVCDQLSVPLTVRHVRAEMPQASLENQLRELRYQVFIN 70

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                   L+  AH  DDQ+ET+ +R  R    +G  L+GM         + + RP L  
Sbjct: 71  VL--NGGDLLALAHHADDQVETMMLRMLRGTGPQG--LAGMPSQRCLGQGM-LIRPLLEH 125

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVN 231
            R ++ S+     +SW ED SN D RF+R  +R  V   +     Y +   F++ +V  +
Sbjct: 126 CRSELESYAQHHGLSWIEDDSNADTRFDRNYLRHEVMPKLARRWPYYRKNFFRNAQVNKD 185

Query: 232 N--AVAMLIPKYLTVHMRSIIA--ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
              ++   + + L   M++  A    + +L   + L   LLR    I    + LPGY+ +
Sbjct: 186 ALSSLDYFLERELQPQMQANEAGLDCEWLLGFPAALQINLLRGWLNI--RSLPLPGYKHL 243

Query: 288 ERVM---LFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
           ++V+   + ++   +  VS   V I R    ++  + 
Sbjct: 244 QQVLTEVVAVRVDAQSLVSWPGVEIRRFQGVVYANKP 280


>gi|209558597|ref|YP_002285069.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes NZ131]
 gi|209539798|gb|ACI60374.1| tRNA(Ile)-lysidine synthetase [Streptococcus pyogenes NZ131]
          Length = 428

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H+L+AVSGG DSM LL  L+      +   I+     V+H  R  +  E  Y+     
Sbjct: 20  HRHVLIAVSGGVDSMNLLHFLYLFQDKLT---IRIGIAHVNHKQRSESDSEEAYLKCWAK 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I   V +++          AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 77  KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R RVR       L  L  +  +F     ++    ++L   +  +          +   
Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239

Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300
              ++ ++LL+       G   L        +++  +++ K+G
Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279


>gi|56808856|ref|ZP_00366567.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Streptococcus pyogenes M49 591]
          Length = 428

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 24/283 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H+L+AVSGG DSM LL  L+      +   I+     V+H  R  +  E  Y+     
Sbjct: 20  HRHVLIAVSGGVDSMNLLHFLYLFQDKLT---IRIGIAHVNHKQRSESDSEEAYLKCWAK 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I   V +++          AAR+ RYA         N + ++TAH  DDQ ET+ MR
Sbjct: 77  KHDIPIYVSNFEGIFS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+        I   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELS 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           F R RVR       L  L  +  +F     ++    ++L   +  +          +   
Sbjct: 184 FLRNRVRNN----YLPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNE 239

Query: 259 IDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300
              ++ ++LL+       G   L        +++  +++ K+G
Sbjct: 240 QSKSIQYFLLQ---DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 279


>gi|302038048|ref|YP_003798370.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii]
 gi|300606112|emb|CBK42445.1| tRNA(Ile)-lysidine synthase [Candidatus Nitrospira defluvii]
          Length = 461

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 25/318 (7%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIA 83
           AVSGG DS+ LL  LH +    +      + +  ++ LR   +  +  +V+ +C RL + 
Sbjct: 2   AVSGGPDSVALLSILHQLAPAWNLL---LTVVHCNYGLRGAESDGDASFVAALCRRLELP 58

Query: 84  HSVVSWKNSKPQTG----LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             +      +  TG    L A AREARY L  +    + A  +   HT DDQ ETV +R 
Sbjct: 59  CHIRRLTVDRRGTGESSSLQARAREARYRLFRDVVVELGADRVALGHTADDQAETVLLRM 118

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+         L+       RP L   R++I ++L    +S+  D SN    +
Sbjct: 119 LRGTGLRGLAGMPHIRESLF------VRPLLSRSRQEILAYLQAVGLSYRTDSSNAKSIY 172

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--------IPKYLTVHMRSIIA 251
            R RVR  +  + + +L     +    +  +      L        + + +     + I 
Sbjct: 173 LRNRVRHELLPV-MQSLAPAAARILARQADLLRDDDRLLDALAAHRLERTIRSRDSATIV 231

Query: 252 ISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
           + +  +L     L   +LR +         +P    +  ++  L S   G  + G  ++ 
Sbjct: 232 LDRTVLLKQPPALQRRILRQAIQAVAPSTGVPRSDVLLSMLASLASHSGGIWNAGAAMVA 291

Query: 311 RRANFLWITRAVRNLPTL 328
              + + +T AV  LP +
Sbjct: 292 CEQDQVRLT-AVSPLPPI 308


>gi|167747340|ref|ZP_02419467.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662]
 gi|167653318|gb|EDR97447.1| hypothetical protein ANACAC_02059 [Anaerostipes caccae DSM 14662]
          Length = 437

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 111/287 (38%), Gaps = 24/287 (8%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR F+     +     I V VSGG+DS+     L  +   +    ++  A+ ++H +
Sbjct: 1   MDKVRKFMEKHHMIGQGDFIAVGVSGGADSV---CLLLLLCELKQEYDLELCAVHINHGI 57

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           R  A  +  +V ++C R ++        V     K    L  A R  RY    +      
Sbjct: 58  RREAFKDQEFVENLCRRRKVPWITFSEDVKGTAEKQSMSLEEAGRMIRYRCFRKVLDMHG 117

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I  AH  +DQ ET+  R  R    +G  L GM           + RP L  ++E+I 
Sbjct: 118 GGKIAVAHHQNDQAETMLYRMSRGTGIQG--LKGMEAVRA-----DVIRPLLCLKKEEIL 170

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVN 231
           ++L +++  W ED SN D+ F R ++R  V           +  +    ++ ++    + 
Sbjct: 171 AYLKEKDQDWMEDASNEDNTFARNKIRNQVIPALTKVNARAVEHIVSLSEEIEEWSRYLE 230

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
             ++      +    +  +  +   L     +   L + +     G+
Sbjct: 231 EQLSEAWKACVKQEGKGRLIDTGRFLEEPEPIRRLLAKQAIEQAAGR 277


>gi|325299729|ref|YP_004259646.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170]
 gi|324319282|gb|ADY37173.1| tRNA(Ile)-lysidine synthase [Bacteroides salanitronis DSM 18170]
          Length = 430

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 120/342 (35%), Gaps = 28/342 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF   +               I+VA+SGG+DS+ LL  L         G     A   + 
Sbjct: 1   MFYQKVIRYIHEKELFTKDDKIVVALSGGADSVALLRVLLQ-------GGYTCVAAHCNF 53

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR   +  +  +V  +C++L++   +  +         +  +  AARE RYA   E  K
Sbjct: 54  HLRGKESDRDAAFVQTLCTKLQVPLHIHDFDTKSYAEAHRVSVEMAARELRYAWFEEVRK 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A +I  AH  DD +ET  +   R    +G+         +   N  I RP L   R 
Sbjct: 114 QERAQVIGVAHHRDDSVETFLLNLVRGTGIQGL-------KGIVPKNGAIVRPLLDVDRT 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNN 232
           DI +FL      +  D +N  D F R ++R  V  +      ++   + +      +V+ 
Sbjct: 167 DILAFLASIGQDYVMDSTNQRDEFTRNKLRLNVLPLLREINPSVSETIAETARRLFEVDA 226

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
              + I +           I    L +++     L  +   +            ++ +  
Sbjct: 227 VYRVAITEACRRVKEGEDRIDIARLRMETAPQAVLFELLYPLGFNA------SQLQDIFR 280

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
            L +            + R  + L I +     P  IL+ E 
Sbjct: 281 SLDAESGRLFYSSGYAVLRDRDSLIIRKREGESPAWILHQET 322


>gi|53804114|ref|YP_114243.1| tRNA(Ile)-lysidine synthetase [Methylococcus capsulatus str. Bath]
 gi|61216455|sp|Q607F5|TILS_METCA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|53757875|gb|AAU92166.1| tRNA(Ile)-lysidine synthetase [Methylococcus capsulatus str. Bath]
          Length = 439

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 128/327 (39%), Gaps = 25/327 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  +  V   R    I   AI V H ++  A    R+ + V  R  +A
Sbjct: 20  VAFSGGLDSAVLLDLMCQV---RRVSGIGVRAIHVHHGIQPEADAWSRHCAAVADRYGVA 76

Query: 84  HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
             ++     S+P     AAAR ARY  +   A      +++TA   DDQ ET+ ++  R 
Sbjct: 77  LDILQIDGRSRPGDSPEAAARTARYHSLE--ASLDPGDILVTAQHLDDQAETLLLQLLRG 134

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL+ M + + +   + + RP LR  R DI ++  +R +SW EDPSN D+R++R 
Sbjct: 135 AGL--AGLAAMPNAVPFGAGI-LHRPLLRFGRRDILAYAQERGLSWIEDPSNRDERYDRN 191

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL----- 257
            +RR +                        A  +L     T+   +  A     L     
Sbjct: 192 FIRRRILPQLAGRWPAVAANLTRSAGHCAEAAGLLDRLADTLMAAATAADEPGTLVLEIV 251

Query: 258 -NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRA 313
             +       LLR    I    +  P  + +ER+   ++     +   ++     + R  
Sbjct: 252 QRLQPDEQRLLLRRW--IHKRGLRAPPAKLLERIRKEVVETAGDRTPMIAWAEGTVRRYR 309

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDG 340
           + L +       P+       T  W G
Sbjct: 310 HRLHLL-----PPSADFDASWTAAWSG 331


>gi|27904608|ref|NP_777734.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46396403|sp|Q89AX3|TILS_BUCBP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|27904005|gb|AAO26839.1| putative cell cycle protein MesJ [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 438

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/327 (21%), Positives = 140/327 (42%), Gaps = 25/327 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +IL+A SGG DS    +    +   ++     F AI ++H L   ++    +   +C   
Sbjct: 13  NILLAYSGGIDST--FLLYQLLKLKKNNLNFTFRAIHINHQLHPDSEKWSDHCKKICINH 70

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   +     +  +  +   AR+ RY  I +  K     ++ T H  +DQ ET+ +  +
Sbjct: 71  NIPIIIKKITINSNKNRIEEIARKKRYQAIYKIIKPK--EVLATGHNLNDQCETMLLALK 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+         +Y   + I RP L+  REDI++++ +  I W ED SN D + +
Sbjct: 129 RGSGITGLSSMSYKLNTIYK--IKIVRPLLKISREDIKTWIYKHKIHWIEDTSNNDTKHD 186

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R  +R  +    +  L  +   F+      +++ N    ++ + +   +   + ++  IL
Sbjct: 187 RNFLRLNI----IPKLKNRWPYFEKNCSRSIEILNIEKKILKQEIKKKLNKYLVLN-SIL 241

Query: 258 N------IDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVV 308
           N      ID  +   +LR    I   Q ++P ++ ++ +   ++F K   +  + I    
Sbjct: 242 NISNFRYIDKNICSIILRHWIKI--NQNTMPTFKIVKEIYNKVIFSKIDSQPKIIIKNYQ 299

Query: 309 IDRRANFLWITRAVRNLPTLILYPEET 335
           I R  N L+ T+ +  +  +IL    T
Sbjct: 300 IRRYNNHLYWTKKIPRIENIILIWNNT 326


>gi|294649384|ref|ZP_06726815.1| tRNA(Ile)-lysidine synthase [Acinetobacter haemolyticus ATCC 19194]
 gi|292824754|gb|EFF83526.1| tRNA(Ile)-lysidine synthase [Acinetobacter haemolyticus ATCC 19194]
          Length = 463

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 138/384 (35%), Gaps = 30/384 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +        L+  SGG DSM LL  +  +         +  AI +DH L++ + +    
Sbjct: 24  AQHFTEKTQFLIGCSGGMDSMLLLYLMSEIFPK------QIRAIYIDHQLQQMSAEWGIL 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V      L I   +           L   AR ARY    +H       +++ AH   DQ 
Sbjct: 78  VQQQSEALNIPCIIQKVSVDA--GNLEQQARHARYQAYQQHLD--GHEILVLAHHQQDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +R        G+      D      +  I RPFL   RE I  +  Q    +  DP
Sbjct: 134 ETLLLRLFSGAGVNGLAAMQQIDN---RKDFTIWRPFLDLSREQIEQWSNQLGFEYVIDP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +N+D  ++R   R  +  + L   + KM+        +    A ++   L    +  +  
Sbjct: 191 TNSDIHYDRAWCREELWGV-LEKRFPKMQSAVARTSYLMQDAAEILDDVLKADYQQCVVD 249

Query: 253 SQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305
            Q     +  + +     LL  SA I G +   P Y  ++R+   ++F K   +  + I 
Sbjct: 250 HQLDLEQLAQLSTARQRQLL--SAWIKGDEQYRPSYEMVKRLQNEVIFSKPDAQASLHIH 307

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
                R    L+       L    LY E+ +           +   IQ+    +      
Sbjct: 308 PYYYLRYQKRLY------RLTHDELYAEKVSTIPNISPLCFFAGQSIQVAAGKFEIISQT 361

Query: 366 SGIPPIIAQRALSSMPSKEGGKPL 389
            G+ P +  R L  +  ++GG+ +
Sbjct: 362 VGLAPELLGRELKLL-KRQGGEKI 384


>gi|254373192|ref|ZP_04988681.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570919|gb|EDN36573.1| tRNA(Ile)-lysidine synthase [Francisella novicida GA99-3549]
          Length = 398

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+HI++  SGG DS  LL     +        I   AI ++H L   +     +    C
Sbjct: 16  SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            R  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QRYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQLYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++ R     G+        + +     + RP L+  + +I  F    NIS+  D SN D 
Sbjct: 129 QAIRGSGLAGLAGIPYYKELQHGG---VLRPLLKYSKIEIEEFAKLNNISYIYDDSNEDI 185

Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           ++ R  +R  +  I       +   + +  ++  + NN +  L+ + L    +    I  
Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245

Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278
           +++ +D  +   LL +       Q
Sbjct: 246 ELIKLDDDIQKSLLHLWFKQNTQQ 269


>gi|268608652|ref|ZP_06142379.1| cell cycle protein MesJ [Ruminococcus flavefaciens FD-1]
          Length = 457

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 25/266 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           + L     ++  +SGG+DS+GLL+AL+ +   R    I   A+ V+HCLR E +  +  +
Sbjct: 13  KLLSDGDTVVCGLSGGADSVGLLLALYEL---REKLGINVEALHVNHCLRGEESDRDEEF 69

Query: 73  VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
              +CSRL I  S           +       AAR+ RY +            I TAH  
Sbjct: 70  CCHLCSRLGIPFSAFRVDVKSYAKEHSLSDEEAARKLRYGVFE---ANSQGKKIATAHNA 126

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D LETV +   R  A     L GM    +   N  I RP L   RE+I +FL +R   +
Sbjct: 127 NDNLETVILNLARGSA-----LKGMAGIPVRRNN--IIRPLLTVSREEIEAFLSERGQEF 179

Query: 189 CEDPSNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
             D +N  D + R ++R  +     +++   +   ++    +R + N  +     +    
Sbjct: 180 VTDSTNLSDDYTRNKIRHKIIPLMNELNSSVIATSVRSIAAMRSE-NELIEAETDEAEEK 238

Query: 245 HMR--SIIAISQDILNIDSTLLFYLL 268
             R  +   +SQ    I    +  LL
Sbjct: 239 CRRDNAFTGLSQYHAVIRRRCIARLL 264


>gi|91775602|ref|YP_545358.1| tRNA(Ile)-lysidine synthetase-like protein [Methylobacillus
           flagellatus KT]
 gi|91709589|gb|ABE49517.1| tRNA(Ile)-lysidine synthetase-like protein [Methylobacillus
           flagellatus KT]
          Length = 425

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 130/325 (40%), Gaps = 26/325 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  LL  L               A+ V H L   A     + +  C  L I
Sbjct: 2   LIAFSGGLDSRVLLQLLAQCSQQHGVL---LEAMHVHHGLSPNADRWAAFCAAECQGLGI 58

Query: 83  AHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           A        ++    G+ A AR ARY  +  H    +A  ++ AH  DDQ ET+ ++  R
Sbjct: 59  AFHCQRICVDTSSGLGIEAGARLARYTALLSH----DADYVLLAHHQDDQAETLLLQLLR 114

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G G  G+    ++D +  + RP +   R++I+++     + W +D SN D R++R
Sbjct: 115 -----GAGAKGLAAMAIHDPSRRLLRPLIDVSRDEIQAYAKHAGLQWVDDESNLDTRYDR 169

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILN 258
             +R  V  + L   Y  ++             A L+ +   +    ++    ++ D L 
Sbjct: 170 NFLRHMVFPV-LAQRYPAVRSTLARSAAHLAEAACLLDELAALDADGMVVDGKVNVDRLG 228

Query: 259 -IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-LFLKSGKRGCVSIGRVVIDRRANFL 316
            + S     LLR      G  + +PG   ++ ++   L +G +  + I        + +L
Sbjct: 229 MLSSQRARNLLRWWLDAHG--LPMPGLPRLQEMLQQLLHAGGQAAIKIRVCE----STYL 282

Query: 317 WITRAVRNLPTLILYPEETTV-WDG 340
              R   +L      PE   + W G
Sbjct: 283 RRYRGWASLSAEPPVPEPAGLCWQG 307


>gi|300727992|ref|ZP_07061370.1| tRNA(Ile)-lysidine synthetase [Prevotella bryantii B14]
 gi|299774834|gb|EFI71448.1| tRNA(Ile)-lysidine synthetase [Prevotella bryantii B14]
          Length = 452

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 138/369 (37%), Gaps = 41/369 (11%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V++F+     L      +VA+SGG+DS+        +L        +  A   +  LR
Sbjct: 5   EKVKYFINEHHLLDKDKKYIVALSGGADSVC-------LLLLLKKLHYQIEAAHCNFRLR 57

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118
            + +  +  +  ++C  L+I    + ++  +     +  +  AAR+ RY+      K I 
Sbjct: 58  GDESYRDEEFCVNLCHALQIPLHRIHFETKEYAHLHKISIEMAARDLRYSYFENLRKDIQ 117

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I  AH  +D +ET+ +   R    +GM         +   N  I RP L  +R+DI 
Sbjct: 118 AEGICIAHHQEDCVETILINLIRGTGIQGM-------RGILPQNGHIIRPLLSIKRKDIE 170

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVN 231
            +L +   ++  D +N  +  +R ++R  +  +           +Y   +   +    +N
Sbjct: 171 YYLQENRQNYVTDSTNLINDVQRNKIRLDIMPMLKQLNAGVVDNIYSTAQHLTEANCIIN 230

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL--FYLLRVSAAICGGQISLPGYRSMER 289
           +A+   + ++          +      I +  +  F                     +E+
Sbjct: 231 DAIKKYLTQHSIFSENEDFGLHSGYQKIRTESIENFSSPEYLLYYILSNYDF-SGSQIEQ 289

Query: 290 VMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
           +   L  KSGK    +   ++IDR    L I R    L   I  PE      G Y F   
Sbjct: 290 IYKNLHGKSGKVWKSNSYELLIDREN--LIIKRRTEILDKTIKIPE-----PGTYVFDET 342

Query: 348 SDSLIQIGP 356
           S  +I   P
Sbjct: 343 SKVIINNIP 351


>gi|220930904|ref|YP_002507812.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168]
 gi|219992214|gb|ACL68817.1| tRNA(Ile)-lysidine synthetase [Halothermothrix orenii H 168]
          Length = 468

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 146/337 (43%), Gaps = 26/337 (7%)

Query: 3   LSPIESVRFFV--RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  ++  R ++    L+     +LV VSGG DS+ LL  L  V  +     +K     +D
Sbjct: 1   MELLKKFREYINHHKLIKKGDGVLVGVSGGPDSLTLLDMLVRVKDE---YGLKLVVFHLD 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAK 115
           H  R+ A  E RYVS++ +   +   +  +      +        AAR+ R+ L+ +   
Sbjct: 58  HKFRQEAAREARYVSNITNNYGLKCIIEEFDVPGLMNDEGLSPEEAARKVRFNLMIKWVN 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           ++N   I  AH  DD +ETV++   R    KG  L+G+ D +     + +  P L   R+
Sbjct: 118 SLNLNKIAVAHNKDDLVETVFLHMFRGTGLKG--LTGI-DPVSRIGGVEVIHPLLNIYRQ 174

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVN 231
           +I  +  +RN++   DP+N +  + R ++R  +       +   +K    +  ++  + N
Sbjct: 175 EIMDYCQRRNLNPVYDPTNQETIYTRNKIRHHIIPYIEDEINPGLKDVIYQMAEVVREEN 234

Query: 232 NAVAMLIPKYLTVHM----RSIIAISQDILNIDSTLLFYLL--RVSAAICG--GQISLPG 283
           N +     K L   +    +  + +S + L     ++   +   V++ + G    +    
Sbjct: 235 NFLDYQAEKNLKKVLVDKGQDYVILSLEKLFKLPLVIRRRITSLVNSKLKGEDNNLYRKH 294

Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
           Y  +E ++    +GKR  +    VV+++  + +   +
Sbjct: 295 YEMVENLIKSKVTGKRFDLP-DGVVVEKSYDKIIFRK 330


>gi|319399666|gb|EFV87920.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis FRI909]
          Length = 431

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 17/251 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             AHI+VAVS G DSM LL    S+L+D      K + + V+H LRE + +E  ++ + C
Sbjct: 10  KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66

Query: 78  SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  I   +     S        +   AR+ RY    +    + A +++TAH  DDQLET
Sbjct: 67  QQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIISQLRADVLLTAHHLDDQLET 126

Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           +  R     + +  +G++       Y     + RP L  ++ +I ++     I + ED S
Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKKTEILAYQHANQIPYYEDMS 182

Query: 194 NTDDRFERVRVRRFVRDIDLHALY------LKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           N D ++ R  +R+ +        +      LK+K + D+ ++     A            
Sbjct: 183 NQDRKYVRNDIRQRIIPAINENPHLNAYQLLKLKDWHDIELQSLKEQAETFISNEVSKSN 242

Query: 248 SIIAISQDILN 258
              + S+   N
Sbjct: 243 LTYSFSRTAFN 253


>gi|327438074|dbj|BAK14439.1| predicted ATPase of the PP-loop superfamily [Solibacillus
           silvestris StLB046]
          Length = 468

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 102/248 (41%), Gaps = 12/248 (4%)

Query: 14  RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71
           + L+     +L+A SGG DSM LL   +       +  I+ +   VDH LR E +  + +
Sbjct: 15  QQLIKSGDKLLIACSGGVDSMALLSFFYHFQ---HYFNIELAVAHVDHMLRGEQSAQDRQ 71

Query: 72  YVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +V   C    I        ++    K    + A  R+ RY        T   T ++TAH 
Sbjct: 72  FVEQACEDWAIPFYSCAIPIAEIQKKEGGNMQAICRKERYHFFETVMHTHKFTKLVTAHH 131

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQLE++ M   +  +  G  L G+  +  +     + RPFL   +++I  +L  +   
Sbjct: 132 ADDQLESMLMAMTKASSLNG--LKGILPSRKF-QQFTVIRPFLMVTKDEIGEYLHSKGHL 188

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           + EDPSN  + + R R R  V  +      L  +    +  ++      L+        +
Sbjct: 189 YREDPSNAKNDYTRNRFRHNVVPVLKEENPLVSRHAVHIAQQLLEDDTYLMELAEERFSK 248

Query: 248 SIIAISQD 255
             + + ++
Sbjct: 249 LFLKVDKN 256


>gi|58040122|ref|YP_192086.1| cell cycle protein MesJ [Gluconobacter oxydans 621H]
 gi|61216387|sp|Q5FQB6|TILS_GLUOX RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|58002536|gb|AAW61430.1| Cell cycle protein MesJ [Gluconobacter oxydans 621H]
          Length = 398

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 148/380 (38%), Gaps = 28/380 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +  A + +AVSGG+DSM L                   A  VDH LR  +  E +     
Sbjct: 11  IDDAPVGLAVSGGADSMALAFLARRWRR-------NVVAFVVDHALRPESAAEAQLTVHR 63

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            + + +   +++     P+  +   AR AR+  +     +     ++ AH   DQ ETV+
Sbjct: 64  LAGMNVKARLLTL-APFPKGRMQERARHARFEALEAACVSEGCLDLLVAHHAGDQDETVW 122

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR         +GLSG+   +     + + RP L      +R  L   N+ W EDPSN +
Sbjct: 123 MRHLHASGP--LGLSGI-QPVSVRGRIRLVRPLLTFPTARLRLTLQAENLPWIEDPSNAN 179

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            RFERVR+R+ +         +  +     R+++   +A  + ++   + +  + + Q+ 
Sbjct: 180 RRFERVRLRQDLTPEQRQEARVLQQDALQERLRLEAELAEELGRHAVWYSQGWVFLGQE- 238

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID---RRA 313
             +D   L  L+R    +  G    P   ++  +M       +G  ++  V +    R  
Sbjct: 239 -GVDEEALSVLIR----LVSGSAYRPAREAVRTLM------TQGYGTLSGVQVRPAGRFG 287

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIA 373
           N + + R  R L   +   +   VWDGR++          +         V       + 
Sbjct: 288 NGIILVREERALGPFV-PAKAGAVWDGRWRLLACDVPQGSLIGSLGDAIHVMDLRRLGVP 346

Query: 374 QRALSSMPSKEG-GKPLLAP 392
             A   +P     G+ +L P
Sbjct: 347 YAAARCLPGVWHEGRLVLGP 366


>gi|257894175|ref|ZP_05673828.1| PP-loop family protein [Enterococcus faecium 1,231,408]
 gi|257830554|gb|EEV57161.1| PP-loop family protein [Enterococcus faecium 1,231,408]
          Length = 293

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L  V     F       + ++H LRE + +E  Y+   
Sbjct: 28  QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 84

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 85  CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+ +   +     + RP L   +ED+ ++  +  + + ED +N  
Sbjct: 144 MKIVRGGQLNT--FSGIKEVQPFATG-RLIRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 200

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           ++ FQ    ++      +I KY+   +   +   ++ 
Sbjct: 201 LDIQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 259

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 260 FRFSAEMI 267


>gi|227533049|ref|ZP_03963098.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227189450|gb|EEI69517.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 438

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 13/330 (3%)

Query: 10  RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           + F R        +LVAVSGG DSM LL              +     + DH LR  ++ 
Sbjct: 6   KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 59

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           E  +V     +L++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  
Sbjct: 60  EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 119

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET+  R  R        L G+     +     + RP L   +  IRS+  Q N+ +
Sbjct: 120 DDQLETILFRLARSGDP--AALIGIRADRTWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 176

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           CED SN D  + R ++R  V           +   Q   ++    +A+   +      R 
Sbjct: 177 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 236

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS-MERVMLFLKSGKRGCVSIGR- 306
            +  +     + S     + R+       Q      R  +  V+  L   K     +G  
Sbjct: 237 QVDDATVNWRVASPQPEAVQRLLLKKILQQWQPNVDRQLLSPVLASLSGTKERRFDLGGG 296

Query: 307 -VVIDRRANFLWITRAVRNLPTLILYPEET 335
             +  +    + +TR     P      ++ 
Sbjct: 297 ISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 326


>gi|317471083|ref|ZP_07930455.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA]
 gi|316901397|gb|EFV23339.1| tRNA(Ile)-lysidine synthetase [Anaerostipes sp. 3_2_56FAA]
          Length = 309

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/287 (20%), Positives = 109/287 (37%), Gaps = 24/287 (8%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR F+     +     I V VSGG+DS+     L  +   +    ++  A+ ++H +
Sbjct: 1   MDKVRKFMEKHHMIGQGDFIAVGVSGGADSV---CLLLLLCELKQEYDLELCAVHINHGI 57

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
           R  A  +  +V ++C R ++     S        K    L  A R  RY    +      
Sbjct: 58  RREAFKDQEFVENLCRRRKVPWITFSEDVKGIAEKQSMSLEEAGRMIRYQCFRKVLDMHG 117

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I  AH  +DQ ET+  R  R    +G  L GM           + RP L  ++E+I 
Sbjct: 118 GGKIAVAHHQNDQAETMLYRMSRGTGIQG--LKGMEAVRA-----DVIRPLLCLKKEEIL 170

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVN 231
           ++L ++   W ED SN D+ F R ++R  V           +  +    ++ ++    + 
Sbjct: 171 AYLKEKGQDWMEDASNEDNTFARNKIRNQVIPALTKVNARAVEHIVSLSEEIEEWSRYLE 230

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
             ++      +    +  +  +   L     +   L +       G+
Sbjct: 231 EQLSEAWKACVKQEGKGSLIDTGRFLEEPEPIRRLLAKQVIEQTAGR 277


>gi|326202845|ref|ZP_08192712.1| tRNA(Ile)-lysidine synthetase [Clostridium papyrosolvens DSM 2782]
 gi|325986922|gb|EGD47751.1| tRNA(Ile)-lysidine synthetase [Clostridium papyrosolvens DSM 2782]
          Length = 470

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 72/267 (26%), Positives = 110/267 (41%), Gaps = 21/267 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V +SGG DS+ LL  L+S+ ++     IK   + V+H LR E A  +  +V   C+ L
Sbjct: 22  VIVGISGGYDSVCLLHVLYSISNELG---IKIYPVHVNHMLRGEEALRDENFVRSFCASL 78

Query: 81  R----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
                + H  VS K    +T L  A R ARY + S  A+   A+ I  AH+ +DQ ET+ 
Sbjct: 79  GLEVYVKHVDVSKKAKIEKTSLEEAGRNARYEVFSTVAEEQGASKIAVAHSRNDQAETIL 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G GL G+        N  I RP L   R  I  ++ +  I    D SN  
Sbjct: 139 MRICR-----GTGLEGLRGMEYKRDN--IIRPLLDVDRYQIEEYVNKIGIEAVTDSSNLH 191

Query: 197 DRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAVAM--LIPKYLTVHMRSII 250
             + R R+R  V      A    +   + +   + V  ++ +     +     V     +
Sbjct: 192 TDYFRNRIRLNVIPAINEASGSDITENLLRLSKIVVAEDDYLRYNSELYYQKAVLSEKRM 251

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGG 277
               D+  +        LRV     G 
Sbjct: 252 YTELDLKVLTEVQQAVRLRVLRIAVGN 278


>gi|261206683|ref|ZP_05921381.1| PP-loop family protein [Enterococcus faecium TC 6]
 gi|260079176|gb|EEW66869.1| PP-loop family protein [Enterococcus faecium TC 6]
          Length = 481

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L  V     F       + ++H LRE + +E  Y+   
Sbjct: 28  QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 84

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 85  CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+ +   +     + RP L   +ED+ ++  +  + + ED +N  
Sbjct: 144 MKIVRGGQLNT--FSGIKEVQPFATG-RLVRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 200

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           ++ FQ    ++      +I KY+   +   +   ++ 
Sbjct: 201 LDVQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 259

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 260 FRFSAEMI 267


>gi|313891663|ref|ZP_07825270.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
           345-E]
 gi|313119941|gb|EFR43126.1| tRNA(Ile)-lysidine synthetase [Dialister microaerophilus UPII
           345-E]
          Length = 484

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/315 (24%), Positives = 127/315 (40%), Gaps = 21/315 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               IL+AVSGG DS+GLL+A++ +     F        ++DH LR+ + +EV YV+ +C
Sbjct: 23  KKDKILLAVSGGPDSLGLLLAMNELKRSEGF---SIGCCTIDHHLRKESAEEVIYVNKIC 79

Query: 78  SRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             L I   V+     + Q         AARE RY  + E       T I  AH  DDQ E
Sbjct: 80  EELGIDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHSDDQAE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV  R  R       GLSGM     Y       RPFL   +++I++++ +       D +
Sbjct: 140 TVIHRLIRGGGM--TGLSGMLPKREY-----FIRPFLAVTKKEIQAYIDEFPYIPAHDKT 192

Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           N      R ++R  +           ++ +       QD    +   V     K++    
Sbjct: 193 NDIPDVTRNKIRLQLIPYLKKYNPNIVNTICRTAAIMQDEDEYIRTEVLNFAKKHIKKEH 252

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
              +  +++  ++   L   ++R   +    +     Y S+ER    + SGK G ++   
Sbjct: 253 GFTVLNTEEFKSVMPALQRRIIRYIFSEYNNEHYTLDYISVERFRELIYSGKTGNITSSS 312

Query: 307 VVIDRRANFLWITRA 321
            ++ +      I   
Sbjct: 313 NMLLKIEKGYCIFTE 327


>gi|199598787|ref|ZP_03212199.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus HN001]
 gi|199590292|gb|EDY98386.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus HN001]
          Length = 435

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 132/324 (40%), Gaps = 30/324 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DSM LL              +     + DH LR  ++ E  +V    
Sbjct: 13  PHTRVLVAVSGGVDSMVLLDLAVRA------PNLDVVVATFDHRLRPESRQEQAFVVAAA 66

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +R  +     +W+ S       AAAR+ARY  ++  A +  AT+IMTAH  DDQLETV  
Sbjct: 67  ARYHVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLF 126

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R        L G+     +     + RP L   ++DIR++  +  + +C+DPSN D 
Sbjct: 127 RLGRSGDP--AALVGIHPDQPWRKK-RLVRPLLNFSKDDIRAYAGRHGLDFCDDPSNADT 183

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250
           R+ R ++R  V           ++  Q    + +  VA+   +      R  I       
Sbjct: 184 RYARNQLRHQVIPAFKQQNPELLRHVQRFTTEQSGLVALAQMQLTEWQQRLRINSVTIDW 243

Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVV 308
            A +     I   LL  LLR         + +P       ++  LK  +     +G  V 
Sbjct: 244 RAAANQPRTIQLMLLATLLRQWQPRVNHGLLMP-------ILKSLKDTRERRFDLGAGVT 296

Query: 309 IDRRANFLWITRAVRNLPTLILYP 332
           I  +A  +     V+ +P   L P
Sbjct: 297 IAVQAAKI-----VKLVPKPKLAP 315


>gi|13899157|gb|AAG12421.1| MesJ [Chlorobaculum tepidum]
          Length = 351

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 132/340 (38%), Gaps = 49/340 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80
           +L+AVSGG DSM LL    SV S       +      +  LR   +  +  +V D C+ L
Sbjct: 44  VLLAVSGGPDSMALLHLFASVAS---VLHCRLGVAHCNFMLRGDASDADESFVRDACAEL 100

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V  +  +      +  +   AR  RY    E  +  + T I T H  DD  ETV 
Sbjct: 101 GIDFHVRRFDTASVSSAWKKSIEETARLLRYDFFGELCREASYTRIATGHHSDDNAETVL 160

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R     G+         +   +  I RP L   R +I ++L ++ + W +D +N  
Sbjct: 161 FNLFRGAGISGL-------RGIRVRHGAIIRPLLPFTRREIVAYLEEKRVVWRDDHTNEG 213

Query: 197 DRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
             ++R  +R  V  +      H L   +++  +   ++   + + I + L  H       
Sbjct: 214 IEYDRNFIRNRVIPVIEERFAHKLMPSLQRISEHAGELEEFIDLHISRLLEAHPG----- 268

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM---ERVMLFLKSGKRGCVSIGRVVI 309
                                + GG++ +   R +   ER  +  ++ K   +S+G  V+
Sbjct: 269 -------------------LDLAGGKLHVGTMRQLSMFERKEILKRALKLQGLSVGSNVL 309

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349
           +R A  L   +A R++P       E  + DG  +F+   +
Sbjct: 310 NRIA-GLLDNQAGRSVPAGAGV--EVVLHDGFLRFRQTGN 346


>gi|289565044|ref|ZP_06445498.1| tRNA(Ile)-lysidine synthase TilS [Enterococcus faecium D344SRF]
 gi|294614895|ref|ZP_06694786.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1636]
 gi|289163251|gb|EFD11097.1| tRNA(Ile)-lysidine synthase TilS [Enterococcus faecium D344SRF]
 gi|291592181|gb|EFF23799.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1636]
          Length = 484

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L  V     F       + ++H LRE + +E  Y+   
Sbjct: 31  QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 88  CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+ +   +     + RP L   +ED+ ++  +  + + ED +N  
Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFATG-RLVRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           ++ FQ    ++      +I KY+   +   +   ++ 
Sbjct: 204 LDVQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 263 FRFSAEMI 270


>gi|291523831|emb|CBK89418.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Eubacterium rectale DSM
           17629]
          Length = 514

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 114/307 (37%), Gaps = 44/307 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLR-ETAKDEVR 71
           + +   + +LVA+SGG+DS+ LL+ L+ +             A+ V+H +R   ++++ R
Sbjct: 13  KMINNHSTVLVALSGGADSVCLLLVLNEIKRQCADELDFALEAVHVEHGIRGAESREDAR 72

Query: 72  YVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEH-------------- 113
           + SD+C RL I   V S    +       GL  AAR  RY    +               
Sbjct: 73  FASDLCERLNIPCHVHSVDVPQYAKSHGLGLEEAARILRYEAFEKEVARILRYEAFEEEA 132

Query: 114 ----AKTINAT----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
                +T NA+          ++  AH  +D  ETV  +  R    KG+        +  
Sbjct: 133 GRYPCETANASDQKQGNSRQAVVAVAHHMEDNAETVLFQMLRGSGAKGLAGMH---PVSV 189

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
              +   RP L   R  I  +L +   ++  D +N D  + R ++R  V  + L      
Sbjct: 190 KNGVTYIRPLLSATRAQIEEYLKENGQAFVTDATNADTAYSRNKLRHDVFPLLLQINDRA 249

Query: 220 MKKFQDLRVKV-------NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272
           ++   +   ++          +       ++     +I       ++   L   + R   
Sbjct: 250 IEHINESAGQLAVMNDFYEQQLKEACDSMVSKKEGRVILEISRFESLHPALKSGVARECI 309

Query: 273 AICGGQI 279
            +  G++
Sbjct: 310 HLASGRL 316


>gi|255262865|ref|ZP_05342207.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62]
 gi|255105200|gb|EET47874.1| tRNA(Ile)-lysidine synthase [Thalassiobium sp. R2A62]
          Length = 422

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 151/400 (37%), Gaps = 19/400 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    + VAVSGGSDS  LL+A            +   A++VDH  R  AK E   VS++
Sbjct: 27  LRSGPVGVAVSGGSDSTALLLACVEWAKS---NGVAVHAVTVDHGQRVEAKQEAIAVSEL 83

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            + L + HS+++ +  +      A AR+ARYA +++ A+     ++   HT DD  ET  
Sbjct: 84  TAELGVEHSILTLETLEAGANFQARARDARYAAMAQWAQARRLAVVAVGHTADDVAETFL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G  L+ M  +       W  RP L  +R+ +R FL  + I W +DPSN  
Sbjct: 144 MRLARGAGVDG--LAQMVGSWTAHEMSW-VRPLLGFKRQALRDFLTAQRIVWSDDPSNQS 200

Query: 197 DRFERVRVRRFVR-----DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            ++ R   R  +       I+   L       +D    +    A       +      + 
Sbjct: 201 IKYTRTAAREVLAALAPLGIEPETLRHVAASLRDASDALYVQTAEAATAVFSQDAGGALT 260

Query: 252 ISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
                 + +   +   L   +      +   P     ++++   +S      ++G  +  
Sbjct: 261 FETKAFHALPIDIQRRLFMAAIRWIATRAYAPRRDEQKQLLRASESA--VTATLGGCLFT 318

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-PSGIP 369
             A    I+R        +       +WDGR+      +  + I         V P    
Sbjct: 319 NAAGCSTISREPAATQGPVPV---DAIWDGRWSVTGKYNGDLHIAALGEAGIAVCPDWRN 375

Query: 370 PIIAQRALSSMPSKEGGKPLL-APFSRFMTKFDLPVAYAF 408
             + +  + + P+   G  L+ AP + +   +   +   F
Sbjct: 376 TGLIRSTVLASPAIWYGDRLIAAPCAGWSNGWLARIVADF 415


>gi|86142944|ref|ZP_01061366.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217]
 gi|85830389|gb|EAQ48848.1| putative cell-cycle protein [Leeuwenhoekiella blandensis MED217]
          Length = 436

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 122/329 (37%), Gaps = 40/329 (12%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSD 75
           +  A  L+AVSGG DS+ L              KI F     +  LR   +  +  +V  
Sbjct: 16  LLNARFLLAVSGGLDSVVLAHLFSEC-------KIDFEIAHCNFNLRGKESDADAVFVEK 68

Query: 76  VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  +L +   + ++         +  +  AARE RY    E  +  +   + TAH   D 
Sbjct: 69  LAEKLHVKFHLQNFDTEAYAQDQKVSIQMAARELRYHWFEELCQLHHLPFLATAHHAKDD 128

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET  +   R     G+       T +   N  + RP L   RE+I ++     ++W ED
Sbjct: 129 LETFLINLSRGSGLNGL-------TGITAENDRLVRPLLPFSREEILTYAEANTLAWRED 181

Query: 192 PSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            SN  D++ R  +R              L       +  ++  + + +  A+L  + +T 
Sbjct: 182 SSNASDKYLRNHLRHHAIPALEEAAPQFLTQFQKSQQHLKETALLLEDYTALLFSQIVTQ 241

Query: 245 HMRSIIAISQDILNID--STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
             +      Q +        +L+ LL+         I           +L  + GK    
Sbjct: 242 SFKGYQFNIQKLKETPNTKAVLYQLLKDFEFTAWDDIYD---------LLDAQPGKYVAT 292

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILY 331
           +  R++ DR  +FL +T   +     +L+
Sbjct: 293 TKHRLIKDR--DFLLLT-EHQAKTEEVLW 318


>gi|330872710|gb|EGH06859.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 441

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 108/309 (34%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    S       AI V H L+  A     +   VC  L +A
Sbjct: 26  VGFSGGLDSTVLLHLLAELARRESLPA--LHAIHVHHGLQAAADAWPEHCRQVCQALDVA 83

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V  K  +P   L  AAR+ARY   ++  +     +++T    DDQ ET+  R  R  
Sbjct: 84  FELVRVKV-EPGASLEQAARQARYTAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       ++RP L   R ++ S+  Q+ + W EDPSN D +F R  
Sbjct: 141 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARQQGLRWVEDPSNDDQQFSRNF 197

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L          +        L +    
Sbjct: 198 LRSQVLPLLTSRWPQATASLARTAGHLAEAQQLLDELAAQDVASAQATTPFAWLGLPVLN 257

Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312
           L  + R+S A     +       + R+           +       R    +    + R 
Sbjct: 258 LGPIARLSGARQRNVMR-HWLAPLTRLPDTDHWAGWEALRDAAQDARPLWRLADGALHRA 316

Query: 313 ANFLWITRA 321
              +W   A
Sbjct: 317 QGCIWWLPA 325


>gi|303231002|ref|ZP_07317745.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514384|gb|EFL56383.1| tRNA(Ile)-lysidine synthetase [Veillonella atypica ACS-049-V-Sch6]
          Length = 320

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 19/316 (6%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL  P A +LVA SGG DSM LL  L  +   R   +      ++DH +R  +  E++ V
Sbjct: 10  SLFPPEARVLVACSGGPDSMVLLDVLQYIKVHRK-AQWTIGVTTMDHSIRRESPSELQMV 68

Query: 74  SDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              C++  +        +     + +  L    R  RY   +E A+  +   I+TAH  D
Sbjct: 69  QSYCNKRNLPFWGIKKDIPTIARERKESLETVGRCERYKWFNELAEREHYEYIVTAHHKD 128

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET+     R    KG  ++GM   I +D  + I RP L   +++I  +   ++I +C
Sbjct: 129 DQGETILAHILRGSGIKG--ITGMS-VISHDYAVPIVRPLLAVTKDEILEYARLQDIEYC 185

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            D SN D ++ R R+R  V    +  L        D   ++ +   +          R  
Sbjct: 186 LDASNEDVKYNRNRIRHDV----IPTLKTINPNVVDALCRLGDIAQVDEAYLNGESQRLF 241

Query: 250 IAISQDILNID--STLLFYLLRVSAAICGGQISLP----GYRSMERVMLFLKSGKRGCVS 303
           I + Q + N    S      L ++      Q+ +P         E++   +++G+    +
Sbjct: 242 IQLVQPVDNGFRVSRRRMRALPLAMQRRLWQLMIPSVSLSLAHQEQLAHIIRTGEAKTFT 301

Query: 304 IGRVVIDRRANFLWIT 319
           I +V I+ + + + + 
Sbjct: 302 IQKVTINAQCDTIHVY 317


>gi|191639452|ref|YP_001988618.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus
           casei BL23]
 gi|190713754|emb|CAQ67760.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Lactobacillus
           casei BL23]
 gi|327383544|gb|AEA55020.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei LC2W]
 gi|327386737|gb|AEA58211.1| tRNA(Ile)-lysidine synthase [Lactobacillus casei BD-II]
          Length = 436

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 13/330 (3%)

Query: 10  RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           + F R        +LVAVSGG DSM LL              +     + DH LR  ++ 
Sbjct: 4   KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 57

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           E  +V     +L++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  
Sbjct: 58  EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 117

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET+  R  R        L G+     +     + RP L   +  IRS+  Q N+ +
Sbjct: 118 DDQLETILFRLARSGDP--AALIGIRADRAWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 174

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           CED SN D  + R ++R  V           +   Q   ++    +A+   +      R 
Sbjct: 175 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 234

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS-MERVMLFLKSGKRGCVSIGR- 306
            +  +     + S     + R+       Q      R  +  V+  L   K     +G  
Sbjct: 235 QVDDATVNWRVASPQPEAVQRLLLKKILQQWQPNVDRQLLSPVLASLSGTKERRFDLGGG 294

Query: 307 -VVIDRRANFLWITRAVRNLPTLILYPEET 335
             +  +    + +TR     P      ++ 
Sbjct: 295 ISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 324


>gi|226954290|ref|ZP_03824754.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ATCC 27244]
 gi|226834961|gb|EEH67344.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. ATCC 27244]
          Length = 463

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 138/384 (35%), Gaps = 30/384 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +        L+  SGG DSM LL  +  +         +  AI +DH L++ + +    
Sbjct: 24  AQHFTEKTQFLIGCSGGMDSMLLLYLMSEIFPK------QIRAIYIDHQLQQMSAEWGIL 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V      L I   +           L   AR ARY    +H       +++ AH   DQ 
Sbjct: 78  VQQQSEALNIPCIIQKVSVDA--GNLEQQARHARYQAYQQHLD--GHEILVLAHHQQDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +R        G+      D      +  I RPFL   RE I  +  Q    +  DP
Sbjct: 134 ETLLLRLFSGAGVNGLAAMQQIDNR---KDFTIWRPFLDLSREQIEQWSNQLGFEYVIDP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +N+D  ++R   R  +  + L   + KM+        +    A ++   L    +  +  
Sbjct: 191 TNSDIHYDRAWCREELWGV-LEKRFPKMQSAVARTSYLMQDAAEILDDVLKADYQQCVVD 249

Query: 253 SQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305
            Q     +  + +     LL  SA I G +   P Y  ++R+   ++F K   +  + I 
Sbjct: 250 HQLDLEQLAQLSAARQRQLL--SAWIKGDEQYRPSYEMVKRLQNEVIFSKPDAQASLHIH 307

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
                R    L+  R         LY E+ +           +   IQ+    +      
Sbjct: 308 PYYYLRYQKRLYRLR------HDELYAEKVSTIPNISPLCFFAGQSIQVAAGKFEIISQT 361

Query: 366 SGIPPIIAQRALSSMPSKEGGKPL 389
            G+ P +  R L  +  ++GG+ +
Sbjct: 362 VGLAPELLGRELKLL-KRQGGEKI 384


>gi|329122059|ref|ZP_08250667.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
           DSM 19965]
 gi|327466866|gb|EGF12382.1| PP loop family cell cycle protein MesJ [Dialister micraerophilus
           DSM 19965]
          Length = 466

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 127/315 (40%), Gaps = 21/315 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               IL+AVSGG DS+GLL+A++ + S   F        ++DH LR+ + +EV YV+ +C
Sbjct: 5   KKDKILLAVSGGPDSLGLLLAMNELKSSEGF---SIGCCTIDHHLRKESAEEVIYVNKIC 61

Query: 78  SRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             L I   V+     + Q         AARE RY  + E       T I  AH  DDQ E
Sbjct: 62  EELGIDCKVIDINVKERQEESNKSCETAARELRYEALKEIFTKYKYTKIALAHHSDDQAE 121

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV  R  R       GLSGM     Y       RPFL   +++I++++ +       D +
Sbjct: 122 TVIHRLIRGGGM--TGLSGMLPKREY-----FIRPFLAVTKKEIQAYIDEFPYIPAHDKT 174

Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           N      R ++R  +           ++ +       QD    +   V     K++    
Sbjct: 175 NDIPDVTRNKIRLQLIPYLKKYNPNIVNTICRTAAIMQDEDEYIRAEVLNFAKKHIKKEH 234

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
              +  +++   +   L   ++R   +    +     Y S+ER    + SGK G ++   
Sbjct: 235 GFTVLNTEEFKFVMPALQRRIIRYIFSEYNNEHYTLDYISVERFRELIYSGKTGNITSSS 294

Query: 307 VVIDRRANFLWITRA 321
            ++ +      I   
Sbjct: 295 NMLLKIEKGYCIFTE 309


>gi|257886017|ref|ZP_05665670.1| PP-loop family protein [Enterococcus faecium 1,231,501]
 gi|257821873|gb|EEV49003.1| PP-loop family protein [Enterococcus faecium 1,231,501]
          Length = 484

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L  V     F       + ++H LRE + +E  Y+   
Sbjct: 31  QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 88  CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+ +   +     + RP L   +ED+ ++  +  + + ED +N  
Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFAAG-RLVRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           ++ FQ    ++      +I KY+   +   +   ++ 
Sbjct: 204 LDVQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 263 FRFSAEMI 270


>gi|227894505|ref|ZP_04012310.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus ultunensis DSM
           16047]
 gi|227863664|gb|EEJ71085.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus ultunensis DSM
           16047]
          Length = 425

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 129/328 (39%), Gaps = 23/328 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +LVA S G DSM LL  L  +    +F      A   DH LR  ++ E   +   
Sbjct: 14  LNDKKLLVASSAGPDSMALLDMLWGMQKKCNFA---VIAAHFDHQLRVDSEKETEILKKY 70

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C +  I      W K+ +PQ G+ AAAR ARYA ++  A   NA  ++TAH  DD LE +
Sbjct: 71  CRQKEIPFFSTKWLKSQQPQRGVEAAARHARYAFLTMVANEQNADYLLTAHHGDDLLENI 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M        +     + + RP L   ++++  +     IS+  D +N 
Sbjct: 131 LLKFIRSGNPEEMNSLQAIGKM---HGIKLLRPLLAYSKQELLDYDRTHEISFIIDSTNE 187

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           +D   R R+R  V  +        +    +   K+N  V M+  +   +   ++      
Sbjct: 188 EDETMRNRLRHHVVPLLKKENPALLHNALNFSQKMNKLVEMVDDRLTEI--GTVEPFLGR 245

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
              I    L  L      I   +             ++ K  +R   ++G   + +   +
Sbjct: 246 AYRISEEKLANLTTDETTIFWQKA------------IWQKYHRRVNQNLGNFDVQKYQGY 293

Query: 316 LWITRA--VRNLPTLILYPEETTVWDGR 341
            ++ R    + +    +  ++  ++ GR
Sbjct: 294 FYLFRKNMAKVVEPQTIKVDQEFIFQGR 321


>gi|298208541|ref|YP_003716720.1| putative cell-cycle protein [Croceibacter atlanticus HTCC2559]
 gi|83848464|gb|EAP86333.1| putative cell-cycle protein [Croceibacter atlanticus HTCC2559]
          Length = 436

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 121/328 (36%), Gaps = 40/328 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79
            +L+AVSGG DSM LL    +         +  +    +  LR   +  +   V +   R
Sbjct: 20  KLLLAVSGGLDSMVLLHLCKA-------SGLNIAIAHCNFNLRGKESDADTLLVKEEADR 72

Query: 80  LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L+I   V  +      +  +  +  AARE RY    E  K  +   ++TAH  +D +ET 
Sbjct: 73  LQITCHVEHFNTESYAADIKVSIQIAARELRYQWFDEVIKEFDYNYVLTAHHLNDDVETF 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G+       + +  +N  I RP L   RE+I ++ L   I W ED SN 
Sbjct: 133 IINLTRGTGLDGL-------SGIPKVNNTIIRPLLPFSREEIHTYALAEKIIWREDASNA 185

Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            D++ R  +R  +         + L          Q     + +   +L    +T   + 
Sbjct: 186 SDKYLRNSIRHHIIPKLEDLNPVFLDNFKRTQHHLQQSSKLIEDYTNVLFKTLVTHTDKG 245

Query: 249 IIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
             +IS   LN       +L+ LL+         +           +   +SGK+      
Sbjct: 246 F-SISLTKLNDFENHDAILYQLLKAFKFKDWSSVYA---------LKDAQSGKQIFSETH 295

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPE 333
           R +I  +   L       +  T+ +  E
Sbjct: 296 R-LIKHQNALLLSVNEALHSETVTVEAE 322


>gi|160935943|ref|ZP_02083317.1| hypothetical protein CLOBOL_00838 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441185|gb|EDP18902.1| hypothetical protein CLOBOL_00838 [Clostridium bolteae ATCC
           BAA-613]
          Length = 479

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 116/348 (33%), Gaps = 52/348 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
             L     ++ AVSGG+DS+ LL  L +    R    I   A+ V H LR E A  +  +
Sbjct: 16  HMLEPGDRVIAAVSGGADSVCLLALLCAWREPRG---ISIRALHVHHGLRGEEADRDADF 72

Query: 73  VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINAT-------- 120
           V  +C  L +   ++        ++       A R  RY  + + A              
Sbjct: 73  VRSLCEGLHVPCHILKVDVRGLAAEKGMSEEEAGRFLRYEALEKEALDWEGEDRASGARS 132

Query: 121 -------------------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
                               I  AH   DQ+ET+     R       GL GM   +    
Sbjct: 133 GQDGDWAHGGLAGSSLSPVKIAVAHHSGDQVETILHNLFRGS-----GLFGMKGIVYRR- 186

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
              I RP L   R+ I  +L   ++ + +D +N    + R R+R  +       +     
Sbjct: 187 -GRIIRPLLDVDRDCILKWLADHDLPYVQDSTNDTLHYTRNRIRNQLLPEIEQYVNRGAA 245

Query: 222 ----KFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQDILNIDSTLLFYLLRVSAAI 274
               +   L  + +  +      ++  H+R        ++  L     L  Y++      
Sbjct: 246 GNILRLGRLAAQADEYLESQAAAWIKAHVRKNPGAYIPAEAFLQEPEILRSYVVMSLLKE 305

Query: 275 CGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITR 320
            GG     G   + +VM       GK+  +  G   I      +W+ R
Sbjct: 306 LGGASRDLGLVHVSQVMELAGRAVGKQVDLPYGLSAIREYE-GIWMGR 352


>gi|94967093|ref|YP_589141.1| tRNA(Ile)-lysidine synthetase-like [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549143|gb|ABF39067.1| tRNA(Ile)-lysidine synthetase-like protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 464

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 132/307 (42%), Gaps = 14/307 (4%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71
            +L  P   + VAVSGG+DS+ LL  L  +   RS   I  S + + H +R   A  + +
Sbjct: 12  HALFRPGDRVGVAVSGGADSVALLRGLLEL---RSELGIALSVVHLHHGIRGAEADADEQ 68

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +V+D+  +  ++  +         S+ +  L  AAR+ RYA      ++     + TAHT
Sbjct: 69  FVADLAGQFDLSLHLERVDVPSHSSQEKLSLETAARDLRYAFFRRLLESSACDKVATAHT 128

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R    +G+           +L   I RP L   R ++ ++L   N  
Sbjct: 129 LDDQAETVLLRILRGTGTRGLAAIPPFRDASPELAACIVRPLLGTERTEVETYLKSLNQP 188

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W ED +NTD +  R R+R  +  +        +++      ++  A        +  H  
Sbjct: 189 WREDSTNTDPKHLRNRIRHELLPMLEAEYNPALRQSLANLAEIARAEEEYWGPIVERHFD 248

Query: 248 SIIAISQDILNIDSTLLFYLL----RVSAAICGGQISLP-GYRSMERVMLFLKSGKRGCV 302
            I+ ++     +D + L  L     R        ++ +P  +  ++  + F++  ++G +
Sbjct: 249 QIVTMTNFGAVLDRSRLSELPQAFRRRVLLALHDRLDMPVSFDGVDFELDFIEGNQKGHI 308

Query: 303 SIGRVVI 309
           +  +  I
Sbjct: 309 THAQASI 315


>gi|225420299|ref|ZP_03762602.1| hypothetical protein CLOSTASPAR_06642 [Clostridium asparagiforme
           DSM 15981]
 gi|225041116|gb|EEG51362.1| hypothetical protein CLOSTASPAR_06642 [Clostridium asparagiforme
           DSM 15981]
          Length = 499

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 125/369 (33%), Gaps = 61/369 (16%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  IE        L     ++ AVSGG+DS+ LL  L  +   R    I+  A+ V H 
Sbjct: 8   FLETIEQY----HMLRQGGRVVAAVSGGADSVCLLALLCGL---RGELGIQVRAVHVHHG 60

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHA-- 114
           LR + A  +  +V  +C   ++  ++      +     +     A R  RY +  E A  
Sbjct: 61  LRGDEADRDAEFVRQLCEGFKVPFALRRVDVREFARAKKLSEEEAGRLLRYRVFEECAGA 120

Query: 115 ------------------------------KTINATLIMTAHTFDDQLETVYMRSQRDYA 144
                                         +  +   +  AH  DDQ ET+     R   
Sbjct: 121 WERGAWAEWADEGTIGPEGAGGGNAWLKADRAADGVRVAVAHHGDDQAETILHNLCRGSG 180

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
            KG+G           +   I RP +   R++I  +L    +S+C+D +N  D + R R+
Sbjct: 181 LKGLGGM-------RPVRGRIIRPLIAVSRKEILEWLAANGLSFCQDSTNDTDHYTRNRI 233

Query: 205 RRFVRDIDLHALYLKM--------KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           RR +  +    +            +        ++         ++      I+   +  
Sbjct: 234 RRQLIPMLQEQVNPGAVESILRVGRLAGQADDYLSGQAREWTGHHVREENGRILVPGEAF 293

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGCVSIGRVVIDRRAN 314
             +   L  Y++       GG+        +++VM    +++G+   +  G   +     
Sbjct: 294 ERLPEILRAYVIFQVMTRVGGRAKDLTSGHVDQVMGLFGMQAGRSQDLPYGIRAVREYEG 353

Query: 315 FLWITRAVR 323
            +   R   
Sbjct: 354 VVIGRRETA 362


>gi|258509511|ref|YP_003172262.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus GG]
 gi|257149438|emb|CAR88411.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus GG]
 gi|259650779|dbj|BAI42941.1| tRNA(Ile)-lysidine synthetase [Lactobacillus rhamnosus GG]
          Length = 435

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 117/278 (42%), Gaps = 17/278 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DSM LL              +     + DH LR  ++ E  +V    
Sbjct: 13  PHTRVLVAVSGGVDSMVLLDLAVRA------PNLDVVVATFDHRLRPESRQEQAFVVAAA 66

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +R  +     +W+ S       AAAR+ARY  ++  A +  AT+IMTAH  DDQLETV  
Sbjct: 67  ARYHVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLF 126

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R        L G+     +     + RP L   ++DIR++  +  + +C+DPSN D 
Sbjct: 127 RLGRSGDP--AALVGIHPDQPWRKK-RLVRPLLNFSKDDIRAYANRHGLDFCDDPSNADT 183

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250
           R+ R ++R  V           ++  Q    + +  VA+   +      R  I       
Sbjct: 184 RYARNQLRHQVIPAFKQQNPELLRHVQRFTTEQSGLVALAQMQLSEWQQRLRINSVTIDW 243

Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            A +     I   LL  LLR         + +P  +S+
Sbjct: 244 RAAANQPRTIQLMLLVTLLRQWQPRVNHGLLMPILKSL 281


>gi|293553697|ref|ZP_06674321.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1039]
 gi|291602272|gb|EFF32500.1| tRNA(Ile)-lysidine synthase [Enterococcus faecium E1039]
          Length = 484

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              + IL AVSGG DSM LL  L  V     F       + ++H LRE + +E  Y+   
Sbjct: 31  QQGSRILAAVSGGVDSMVLLHLLLQVQRQIGF---SLGIVHINHQLREESAEEAAYLRSY 87

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C    +   V  W++   ++ +   AR  RY   +   +      +MTAH  DDQ+ETV 
Sbjct: 88  CEEKNLPLYVSIWEDPA-KSAIETEARNFRYQEFTRVMEEGQYDTLMTAHHGDDQIETVL 146

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R         SG+ +   +     + RP L   +ED+ ++  +  + + ED +N  
Sbjct: 147 MKIVRGGQLNT--FSGIKEVQPFAAG-RLVRPLLSFSKEDLYTYAAESQLVYFEDQTNQL 203

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
              +R R+R  V           ++ FQ    ++      +I KY+   +   +   ++ 
Sbjct: 204 LDVQRNRLRHLVVPQLKQENTQALRHFQQFSQQI-QWADQVIQKYMGQLIEKEVEQWEEQ 262

Query: 257 LNIDSTLL 264
               + ++
Sbjct: 263 FRFSAEMI 270


>gi|251809816|ref|ZP_04824289.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251806684|gb|EES59341.1| possible tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|329733025|gb|EGG69364.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU028]
          Length = 432

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 19/230 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             AHI+VAVS G DSM LL    S+L+D      K + + V+H LRE + +E  ++ + C
Sbjct: 10  KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66

Query: 78  SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  I   +     S        +   AR+ RY    +    + A +++TAH  DDQLET
Sbjct: 67  HQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQLET 126

Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           +  R     + +  +G++       Y     + RP L  ++ +I ++     I + ED S
Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMS 182

Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           N D ++ R  +R+ +         ++ H L LK+K + D+ ++     A 
Sbjct: 183 NQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAE 231


>gi|56460788|ref|YP_156069.1| PP family ATPase [Idiomarina loihiensis L2TR]
 gi|61216428|sp|Q5R0Q7|TILS_IDILO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56179798|gb|AAV82520.1| ATPase of the PP-loop superfamily [Idiomarina loihiensis L2TR]
          Length = 448

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 136/347 (39%), Gaps = 27/347 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F   +ES+     +L     ++ A+ GG+DS  +L  L          + ++ AI +DH
Sbjct: 9   LFCESLESL-----ALKPGQQLVAALGGGADSQTILDLLMRFRQQN--PQYQYLAIHLDH 61

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119
               ++ D    +        +           + +    AA RE+RY  ++E   T + 
Sbjct: 62  SFHPSSADWSSTIEHAAKSYGVKTVFEPLNVPIENRQSKEAAGRESRYRRMAEL--TEDD 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            +++     +DQ+ET +++ +R    KG  LS M     +  +  + RP L   +EDI S
Sbjct: 120 AVLLLGQHRNDQIETFFLQLKRGSGPKG--LSSMAAIQPWVGSRRLCRPLLSVSKEDILS 177

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---- 235
           +  Q+ ++W ED +N D R ER  +R  V  +    L  +  +F +  ++     A    
Sbjct: 178 YAQQQKLTWIEDDTNYDTRIERNFLRHKVVPL----LEQRWPQFGNSVLRSAKLCAEQQQ 233

Query: 236 ---MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
               L+ + L    +        +L+  S  +   L     + G + SLP Y  +E++ L
Sbjct: 234 VMDELLQEKLYKAQKHKSHFPLSLLSEHSAAMQRALLR-VWLQGQEYSLPSYEQLEQIRL 292

Query: 293 FLKS---GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
             +S     +  V      +      LW       LP      E   
Sbjct: 293 QAQSATDDSQMQVQCDGYSVRYFQYALWCDNNTGQLPADCWLAEANV 339


>gi|281420131|ref|ZP_06251130.1| tRNA(Ile)-lysidine synthase [Prevotella copri DSM 18205]
 gi|281405931|gb|EFB36611.1| tRNA(Ile)-lysidine synthase [Prevotella copri DSM 18205]
          Length = 449

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 20/222 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           +VA+SGG+DS+ LL+ L ++        +  SA   +  LR E +  + ++  ++C +  
Sbjct: 25  IVALSGGADSVALLLILKNI-------GLNISAAHCNFHLRGEESDRDEQFCINLCQQQG 77

Query: 82  IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I+ S + +         +  +  AAR  RY+  S+  K ++A  I  AH  DD +ET+ +
Sbjct: 78  ISLSRIHFDTYAYAHLHKVSIEMAARNLRYSYFSQLVKDLHAGGICVAHHRDDNVETLLL 137

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G+         +   N  I RP L   R+DI  +L ++   +  D +N +D
Sbjct: 138 NLLRGSGVDGLA-------AIAPKNGNILRPLLCISRQDILQYLKEKKQDFVTDSTNLED 190

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
              R ++R  V  + L ++     +   L  K       ++ 
Sbjct: 191 DALRNKIRHHVVPL-LESINPAASENIALTAKYIRQAKSILE 231


>gi|331701917|ref|YP_004398876.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929]
 gi|329129260|gb|AEB73813.1| tRNA(Ile)-lysidine synthase [Lactobacillus buchneri NRRL B-30929]
          Length = 460

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/318 (23%), Positives = 129/318 (40%), Gaps = 23/318 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VAVS G DSM LL  L  +       + K     VDH LR+ + +E RY+S+ CS   
Sbjct: 23  VVVAVSTGVDSMTLLYMLQHL---PRAVRPKIIVAYVDHQLRDQSVEETRYISNYCSEHG 79

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +      W K+  P+ G+ AAAR  RY       K   +T ++TAH  DD +ETV M+  
Sbjct: 80  LLLKQAVWPKDDHPKVGIEAAARTFRYRFFERVLKETGSTCLLTAHHGDDLVETVIMKLV 139

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R        L+G+ +T  +  +  + RP L   ++ + SF     I W ED +N     E
Sbjct: 140 RGGQL--ASLTGIRETRSFA-DANMIRPLLSFSKQQLESFAQTTGIRWFEDETNQQLAVE 196

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM-------LIPKYLTVHMRSIIAIS 253
           R R+R  V  +        +        ++ + +A        LI   +    +    I 
Sbjct: 197 RNRIRHGVMPLLKAENPQLLPHVLSYTNQLADNLAAIEFLIQPLIHSAVGFPEKQRAEID 256

Query: 254 QDILNIDSTLLFYLLR-VSAAICGGQISLP--GYRSMERVMLFLKSGKRGCVSI---GRV 307
            D L         +++ +   +    + +P      ++ V+  ++   R    +      
Sbjct: 257 LDSL---KDFPDSVVKCLLEEVFEHYLRIPNVSVDQLDEVLGLIQQTARPQAKMDLEAGW 313

Query: 308 VIDRRANFLWITRAVRNL 325
            + R    L I +  + +
Sbjct: 314 QVRRVYQSLIICKEPQKI 331


>gi|283469801|emb|CAQ49012.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 431

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 IYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQSFNNLPNSLKMVVL 266


>gi|254514885|ref|ZP_05126946.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium NOR5-3]
 gi|219677128|gb|EED33493.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium NOR5-3]
          Length = 413

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 128/326 (39%), Gaps = 13/326 (3%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           +L   A + VA SGG DS  LL AL +  S         +A+  +H L + A+   R+ +
Sbjct: 3   ALERAAGVYVAYSGGLDSTVLLHALATSFSGL------VTALHANHGLHDDAELWARHCA 56

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++C + +++      + +    G+ AAAR ARY       +     +++ AH  DDQ ET
Sbjct: 57  ELCDQWKVSFRSTRLQLNDTGDGVEAAARSARYHWFETCVEA--DAVLLMAHHQDDQAET 114

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +R  R    +G+G       +    +  + RP L   R D+  +  Q  +SW +DPSN
Sbjct: 115 LLLRLLRGAGPQGLGSIPTTRAL---GHGSLLRPLLDIPRSDLAGYAAQHKLSWIDDPSN 171

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           TD RF+R  +R+ V  +                 ++      L    L     S+     
Sbjct: 172 TDTRFDRNYLRQEVMPLLAGRWPGYRSTLSRAASQLRELNEHLPGPALPTVHGSLGDPGF 231

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
            + ++        L +   +    +  P    +   +  ++ G    +      ++R   
Sbjct: 232 QVEDLPREPALAALALRRWLRERSLVAPPAARLSEFLRQVRHGSGARLCGSGWTLERYRA 291

Query: 315 FLWITRAVRNLPT--LILYPEETTVW 338
            +++     +     L + P +   W
Sbjct: 292 AVYLCPTGLDPAPGILTIQPGQALHW 317


>gi|75676895|ref|YP_319316.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255]
 gi|74421765|gb|ABA05964.1| tRNA(Ile)-lysidine synthase [Nitrobacter winogradskyi Nb-255]
          Length = 371

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 88/312 (28%), Positives = 138/312 (44%), Gaps = 13/312 (4%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+ R F       A +++AVSGG DS+ L+            G     A++VDH LR  A
Sbjct: 26  ETKRLFSDWKASRA-LVLAVSGGPDSVALMWLAARWRRAMKRGP-DLVAVTVDHALRREA 83

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             E R V  +   L I H  + W   KP TGL AAAREARYAL+ + A+++ A+ ++T H
Sbjct: 84  AREARQVKQLAKSLSIPHRTLRWTGPKPATGLPAAAREARYALLFKAARSLGASHVLTGH 143

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV MR  R       GLS M    + D    + RP L   +  + + L +  I
Sbjct: 144 TLDDQAETVLMRISRGSGI--AGLSAMSRETMRD-GFVLVRPLLNVPKARLIATLKKAKI 200

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVH 245
            + EDP+N D  F R R+R  +  +       + + +     ++ N A+ +L+       
Sbjct: 201 DYAEDPTNRDLGFTRPRLRALMPALAEEGCDARNLSRLASRLMRANAALELLVDGAERFL 260

Query: 246 MRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
                A  +          +   +   LL+ +    G +        +E ++  L+S   
Sbjct: 261 ALQDTAAPRPGFRTEAFMVLSEEIKVRLLQRTIDRFGCEG-PAELGKVETLLSALESAAN 319

Query: 300 GCVSIGRVVIDR 311
              S  R+++ R
Sbjct: 320 DADSGRRILLRR 331


>gi|288927672|ref|ZP_06421519.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288330506|gb|EFC69090.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 453

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 127/341 (37%), Gaps = 43/341 (12%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L      LVA+SGG+DS+ L   L  +         K  A+  +  LR E +  +  +  
Sbjct: 18  LSASGRYLVALSGGADSVALFRMLLRL-------DYKVDAVHCNFKLRGEESFRDEAFCE 70

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++C    +A   V +  ++     +  +  AARE RY    +    ++   I  AH  DD
Sbjct: 71  NLCREHGVAFHTVHFDTAEYAALHKLSIEMAARELRYNHFEKLRNDLDMDGICVAHHQDD 130

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+ +   R     G GLSG+        N  + RP L      +  +L      +  
Sbjct: 131 NVETMLINLIR-----GTGLSGLTGMKPR--NGHVLRPLLAVSHAHLLDYLQALGQPYVT 183

Query: 191 DPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           D +N    F R ++R         +  +  + +   +++  +     N A+         
Sbjct: 184 DSTNLTTDFTRNKIRLTLVPLLTEINRVSTNNIAKTIERLAEAEKIFNPAIERHANDATV 243

Query: 244 V---HMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--K 295
           V     R  + IS D L        +LF L+             P    +E++   L  +
Sbjct: 244 VREDEPRWRLGISIDRLRQTPSPEYVLFQLIHPLG-------FAP--AQIEQIAQNLDQQ 294

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
           +GK+       +VIDR+   +  T     L   +  PEE T
Sbjct: 295 TGKQWQSPTHTLVIDRQMLLVEQTLPASKLAKTMRIPEEGT 335


>gi|116495973|ref|YP_807707.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334]
 gi|116106123|gb|ABJ71265.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei ATCC 334]
          Length = 436

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 13/330 (3%)

Query: 10  RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           + F R        +LVAVSGG DSM LL              +     + DH LR  ++ 
Sbjct: 4   KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 57

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           E  +V     +L++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  
Sbjct: 58  EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 117

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET+  R  R        L G+     +     + RP L   +  IRS+  Q N+ +
Sbjct: 118 DDQLETILFRLARSGDP--AALIGIRADRAWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 174

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           CED SN D  + R ++R  V           +   Q   ++    +A+   +      R 
Sbjct: 175 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 234

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS-MERVMLFLKSGKRGCVSIGR- 306
            +  +       S+    + R+       Q      R  +  V+  L   K     +G  
Sbjct: 235 QVDDATVNWRAASSQPEAVQRLLLKKILQQWQPNVDRQLLSPVLASLSGTKERRFDLGGG 294

Query: 307 -VVIDRRANFLWITRAVRNLPTLILYPEET 335
             +  +    + +TR     P      ++ 
Sbjct: 295 ISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 324


>gi|239630372|ref|ZP_04673403.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526655|gb|EEQ65656.1| tRNA lysidine synthetase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 436

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 13/330 (3%)

Query: 10  RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           + F R        +LVAVSGG DSM LL              +     + DH LR  ++ 
Sbjct: 4   KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 57

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           E  +V     +L++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  
Sbjct: 58  EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 117

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET+  R  R        L G+     +     + RP L   +  IRS+  Q N+ +
Sbjct: 118 DDQLETILFRLARSGDP--AALIGIRADRTWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 174

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           CED SN D  + R ++R  V           +   Q   ++    +A+   +      R 
Sbjct: 175 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 234

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS-MERVMLFLKSGKRGCVSIGR- 306
            +  +     + S     + R+       Q      R  +  V+  L   K     +G  
Sbjct: 235 QVDDATFNWRVASPQPEAVQRLLLKKILQQWQPNVDRQLLSPVLASLSGTKERRFDLGGG 294

Query: 307 -VVIDRRANFLWITRAVRNLPTLILYPEET 335
             +  +    + +TR     P      ++ 
Sbjct: 295 ISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 324


>gi|282860306|ref|ZP_06269375.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010]
 gi|282586903|gb|EFB92139.1| tRNA(Ile)-lysidine synthetase [Prevotella bivia JCVIHMP010]
          Length = 455

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 63/257 (24%), Positives = 105/257 (40%), Gaps = 29/257 (11%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  V+ F+   + L      LVA+SGG+DS+ LL+ LH +            A   +  L
Sbjct: 2   LNKVQNFINKHQLLDNNRRYLVALSGGADSVCLLLILHKL-------GYAVEAAHCNFKL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R E +  + ++  D+C R  I   ++ +   +     +  +  AAR+ RY    +  + I
Sbjct: 55  RGEESNRDEQFCIDLCKRQNIKIHLIHFDTREYAALKKISIEMAARDLRYRYFEQLCRDI 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  I   H  DD +ET+ +   R    KG+       T +  +N  I RP L C +EDI
Sbjct: 115 DAAGICVGHHQDDSVETILLNLVRGTGIKGL-------TGIKPINGLIIRPLLVCSKEDI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
            ++L     ++  D SN      R ++R       R +     HA+        +    V
Sbjct: 168 NAYLKAEGATYITDSSNLVPDVMRNKIRLQVLPLLREINPSVEHAIMQTASHLIETERVV 227

Query: 231 NNAVAMLIPKYLTVHMR 247
             AV   +      H R
Sbjct: 228 EGAVETALSSVAFSHNR 244


>gi|282892295|ref|ZP_06300691.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497886|gb|EFB40237.1| hypothetical protein pah_c221o029 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 426

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 140/406 (34%), Gaps = 25/406 (6%)

Query: 7   ESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E V  F++        ILV +SGG DS+ LL  L           +K     +DH  R+ 
Sbjct: 3   EIVLRFLKMRCDETRPILVGLSGGPDSIALLYLLLKCAK---MIPLKLGIAHIDHRWRQE 59

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++ E   +  +   L +   +     +     L AA R+ RY   +E A   +   ++  
Sbjct: 60  SEKEAETLKTLAESLHVPFHLKVLDPTSMHGNLEAACRDLRYQFFAEVAAIYDYQAVVLG 119

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ ET+  R     +   + L G+ +T      L I RP L   +  I S+L + +
Sbjct: 120 HHQDDQAETILKRILEGASL--VKLRGIAETKQQG-GLAIWRPLLEVDKAKILSWLSKHD 176

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I +  D +N D +F R ++R  +          ++K       K +  +      +L  +
Sbjct: 177 IPFFNDSTNLDPKFLRGKMRSRMMPYLAKEFGKEIKSALLYLGKESEELEHFFQTHLQPY 236

Query: 246 MRSIIA----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RG 300
              I+     +  D+        F L ++   +   +        M+  +  ++  +   
Sbjct: 237 FEKILRTPIGVWVDLSQKQPGTSFELKQLLRYVLSEEGISFSRSQMDVAVKCIREKRANC 296

Query: 301 CVSIGRVVIDRRANFLWITRA-----------VRNLPTLILYPEETTVWDGR-YQFQNLS 348
           C+  G   +      ++I +            V +    +  P    VW G  +     S
Sbjct: 297 CIEAGDHEVQFDRGNIFIGKKLWADWKVAYEFVESDEKDLKLPTWRDVWQGHFFAIIPWS 356

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALS-SMPSKEGGKPLLAPF 393
           D      P +     +            +   +P       ++  F
Sbjct: 357 DDCKVDLPVTGTANWLDKWWTNHKVPAFMRWKIPVVWQNNRIVYEF 402


>gi|329737901|gb|EGG74129.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU045]
          Length = 432

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 19/230 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             AHI+VAVS G DSM LL    S+L+D      K + + V+H LRE + +E  ++ + C
Sbjct: 10  KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66

Query: 78  SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  I   +     S        +   AR+ RY    +    + A +++TAH  DDQ ET
Sbjct: 67  HQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQFET 126

Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           +  R     + +  +G++       Y     + RP L  ++ +I ++     I + ED S
Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMS 182

Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           N D ++ R  +R+ +         ++ H L LK+K + D+ ++     A 
Sbjct: 183 NQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAE 231


>gi|166033184|ref|ZP_02236013.1| hypothetical protein DORFOR_02906 [Dorea formicigenerans ATCC
           27755]
 gi|166027541|gb|EDR46298.1| hypothetical protein DORFOR_02906 [Dorea formicigenerans ATCC
           27755]
          Length = 516

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 118/302 (39%), Gaps = 56/302 (18%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDH 60
           + V+ +V     L     ++V VSGG+DS+ LL  L  +  +R     G ++ +A+ V H
Sbjct: 3   QKVKAYVEEQHMLEKKDRVIVGVSGGADSVCLLFVLTKLRDERQKSGDGTLEITAVHVHH 62

Query: 61  CLRETAKD-EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115
            LR  + D + RYV  +C    +   V    +             A R+AR     E   
Sbjct: 63  GLRGDSADADERYVRKICDAWNVPLVVYHKNIRELAKCWNMSEEEAGRKARREAFLEVRN 122

Query: 116 TI-----------------------------NATLIMTAHTFDDQLETVYMRSQRDYAEK 146
                                              I  AH  +D+ ETV     R    +
Sbjct: 123 QYSDVPCDNAQYGDIQSRHAECANGRQESAQGFGKIALAHHRNDEAETVLFHLCRGTDVR 182

Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           G+G        +  ++ +  RP L   R +I S+L +  IS+C D +N ++ + R ++R 
Sbjct: 183 GLG-------GIAPVSGFWIRPLLNIGRNEIESYLEKVGISYCTDETNAENVYARNKLRN 235

Query: 207 FV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
            V     +I+  A++   +  Q +R ++ + V M I +Y     + ++ I       ++ 
Sbjct: 236 QVIPQLEEINEQAVWHISRTAQSVR-ELWSYVDMQIEEY----KKKVLQIEPQSCRKETN 290

Query: 263 LL 264
           L 
Sbjct: 291 LA 292


>gi|218259686|ref|ZP_03475329.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224957|gb|EEC97607.1| hypothetical protein PRABACTJOHN_00988 [Parabacteroides johnsonii
           DSM 18315]
          Length = 444

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 77/357 (21%), Positives = 134/357 (37%), Gaps = 45/357 (12%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + VR ++   R L     +LV VSGG+DS+ LL  L              +    +  LR
Sbjct: 3   DVVRAYIEKYRLLTENRPVLVGVSGGADSIALLTILVE-------SGYSCTVAHCNFHLR 55

Query: 64  -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            + +  + ++V +   +L +             +  +  +  AARE RY    E      
Sbjct: 56  GDESLRDEQFVREYARKLDVPFLMTDFDTRKYAASRRLSIEMAARELRYDWFEEQRVATG 115

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I  AH  DD +ET+ M   R    +G+       + +   N ++ RP L   REDI 
Sbjct: 116 AQAIAVAHHRDDSVETLLMNLVRGTGIRGL-------SGIRPKNGFVVRPLLAVSREDIL 168

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +L +R + +  D +N  D + R  +R  V  +                  ++   A+ +
Sbjct: 169 EWLARRGLRYVTDSTNLSDAYTRNFIRLRVLPLLKEINPSVKNSIARTSEHLSAVEAIYL 228

Query: 239 PKYLTVHMRSIIAISQDILNI--------DSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
             ++    R+ +    D L+I           +L+ LL+               +  E V
Sbjct: 229 --HVVEEARNTVVKQGDRLSIATLMHYPSPDAILYELLK---------TYDFTRQVAEDV 277

Query: 291 MLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQ 345
            L L  +SGK    S  R++ DR  ++L ++  V+             VW G  +  
Sbjct: 278 YLSLTKESGKTFFSSTHRLIKDR--DYLLLSPLVKEEVCEYTLTGGEKVWSGPVELS 332


>gi|27469192|ref|NP_765829.1| hypothetical protein SE2274 [Staphylococcus epidermidis ATCC 12228]
 gi|57866063|ref|YP_187744.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A]
 gi|242241594|ref|ZP_04796039.1| cell cycle control ATP-binding protein MesJ [Staphylococcus
           epidermidis W23144]
 gi|293366151|ref|ZP_06612838.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|61217168|sp|Q5HRP5|TILS_STAEQ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217351|sp|Q8CQV3|TILS_STAES RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|27316741|gb|AAO05916.1|AE016751_211 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57636721|gb|AAW53509.1| MesJ/Ycf62 family protein [Staphylococcus epidermidis RP62A]
 gi|242234975|gb|EES37286.1| cell cycle control ATP-binding protein MesJ [Staphylococcus
           epidermidis W23144]
 gi|291319745|gb|EFE60104.1| tRNA(Ile)-lysidine synthase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 432

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 19/230 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             AHI+VAVS G DSM LL    S+L+D      K + + V+H LRE + +E  ++ + C
Sbjct: 10  KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66

Query: 78  SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  I   +     S        +   AR+ RY    +    + A +++TAH  DDQ ET
Sbjct: 67  HQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQFET 126

Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           +  R     + +  +G++       Y     + RP L  ++ +I ++     I + ED S
Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKKTEILAYQYANQIPYYEDMS 182

Query: 194 NTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           N D ++ R  +R+ +         ++ H L LK+K + D+ ++     A 
Sbjct: 183 NQDRKYVRNDIRQRIIPAINENPHLNAHQL-LKLKDWHDIELQSLKEQAE 231


>gi|21674432|ref|NP_662497.1| MesJ protein [Chlorobium tepidum TLS]
 gi|61216669|sp|Q8KC15|TILS_CHLTE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21647616|gb|AAM72839.1| tRNA(Ile)-lysidine synthetase [Chlorobium tepidum TLS]
          Length = 331

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 132/340 (38%), Gaps = 49/340 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80
           +L+AVSGG DSM LL    SV S       +      +  LR   +  +  +V D C+ L
Sbjct: 24  VLLAVSGGPDSMALLHLFASVAS---VLHCRLGVAHCNFMLRGDASDADESFVRDACAEL 80

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V  +  +      +  +   AR  RY    E  +  + T I T H  DD  ETV 
Sbjct: 81  GIDFHVRRFDTASVSSAWKKSIEETARLLRYDFFGELCREASYTRIATGHHSDDNAETVL 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R     G+         +   +  I RP L   R +I ++L ++ + W +D +N  
Sbjct: 141 FNLFRGAGISGL-------RGIRVRHGAIIRPLLPFTRREIVAYLEEKRVVWRDDHTNEG 193

Query: 197 DRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
             ++R  +R  V  +      H L   +++  +   ++   + + I + L  H       
Sbjct: 194 IEYDRNFIRNRVIPVIEERFAHKLMPSLQRISEHAGELEEFIDLHISRLLEAHPG----- 248

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM---ERVMLFLKSGKRGCVSIGRVVI 309
                                + GG++ +   R +   ER  +  ++ K   +S+G  V+
Sbjct: 249 -------------------LDLAGGKLHVGTMRQLSMFERKEILKRALKLQGLSVGSNVL 289

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD 349
           +R A  L   +A R++P       E  + DG  +F+   +
Sbjct: 290 NRIA-GLLDNQAGRSVPAGAGV--EVVLHDGFLRFRQTGN 326


>gi|255023939|ref|ZP_05295925.1| bifunctional protein TilS/hprT [Listeria monocytogenes FSL J1-208]
          Length = 240

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 92/227 (40%), Gaps = 13/227 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K       ++H LRE A +E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSDLVQKEAIYVAHLNHHLRENAANEQNVVETFC 76

Query: 78  SRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   +       +    Q G+   AR  RY    +     N   +  AH  DDQ+E
Sbjct: 77  ERHGIPLYIEEVDIKSRAESLQKGIEETARIVRYDFFEKVMAEKNINKLALAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R  A   +G SG+           I RPFL   + +I ++  +  +++  D S
Sbjct: 137 TILMRLVRGSAS--IGWSGIQPKREVKGGYAI-RPFLPITKAEIIAYAQKHELAYEIDES 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAML 237
           N    + R R R  +      +  A+Y   ++F +   +    +  L
Sbjct: 194 NASQEYTRNRYRAQLLPFLKQENPAVYAHFERFSEETSEDFRFLEAL 240


>gi|262374325|ref|ZP_06067601.1| tRNA(Ile)-lysidine synthetase [Acinetobacter junii SH205]
 gi|262310883|gb|EEY91971.1| tRNA(Ile)-lysidine synthetase [Acinetobacter junii SH205]
          Length = 463

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 115/317 (36%), Gaps = 23/317 (7%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            V    +        L+  SGG DSM LL  +  +   ++        I +DH L+ ++ 
Sbjct: 19  RVLAQTQHFSKDTQFLIGCSGGMDSMLLLYLMSEIFPSQTRS------IYIDHQLQSSST 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +    V     +L I   +           L   AR ARY    +H K+    +++ AH 
Sbjct: 73  EWGCLVQKQSEQLNIPCVIQKVHVDA--GNLEQQARHARYQAYIKHLKSH--EILVLAHH 128

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             DQ ET+ +R        G+      D      +L I RPFL   R+ I  +  Q    
Sbjct: 129 QQDQAETLLLRLFSGAGVNGLSAMQAYDV---RKDLTIWRPFLELSRQQIEEWAKQIGFD 185

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  DP+N D  ++R   R  +  + L   + KM+        +      ++   L    +
Sbjct: 186 YVVDPTNHDTHYDRAWCREELWPV-LEKRFPKMQSAVSRTSYLMQDATEILDDVLQSDWK 244

Query: 248 SIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGY---RSMERVMLFLKSGKRG 300
                ++     +L +       LL  SA I G     P Y   + ++  ++F K   + 
Sbjct: 245 LCATENELDLTRLLELSDARKRQLL--SAWIKGKDQYRPSYDMVKRLQDEVIFAKPDAQA 302

Query: 301 CVSIGRVVIDRRANFLW 317
            + I      R    L+
Sbjct: 303 TLHINSYYYVRYQKKLY 319


>gi|253735244|ref|ZP_04869409.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|253726804|gb|EES95533.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus TCH130]
          Length = 431

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDNYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEK 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|42526849|ref|NP_971947.1| hypothetical protein TDE1341 [Treponema denticola ATCC 35405]
 gi|61217302|sp|Q73N15|TILS_TREDE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|41817164|gb|AAS11858.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
          Length = 460

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 145/343 (42%), Gaps = 35/343 (10%)

Query: 1   MFLSPIESVRFFVRSL----VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           M  S ++ V     SL      P  +L+AVSGG+DSM +L A   + SD +    +   +
Sbjct: 7   MAKSFLKDVLLGFSSLCDRTAAPLRLLLAVSGGADSMAMLSAFLELKSDINA---EIFVL 63

Query: 57  SVDHCLRETAK--DEVRYVSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYA 108
           +V+H +R   +   + ++V D C+         I  + V  +    +TG+  AAR  RY 
Sbjct: 64  TVNHNIRPEKETLGDAQFVLDFCNDKCPCILAEIPKNTVFDEAKNRKTGIEDAARFLRYN 123

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
              + A ++NA  I+TAH  +D  ETV MR  +    +   L G+             RP
Sbjct: 124 EFEKAADSLNADYILTAHNKNDNYETVLMRLFQGSEPE--ALMGIS-----PRRGRFIRP 176

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            L   R +I  +L ++NI W ED +N +  + R +VR  +  + L   +   +   D  +
Sbjct: 177 MLNISRSEIEEYLKEKNIPWREDATNLEASYLRNKVRHNLLPV-LSICFDGWQSGLDKSL 235

Query: 229 KVNNAVAML-IPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQI 279
               A     I  Y T     ++   +D         L++D  L    L+    +  G+ 
Sbjct: 236 AKIKAQNDFVIASYKTKKEEWVLDKKEDCCRCKFLFFLSLDEALKLKFLQEGLILLKGKR 295

Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322
            +P Y   + +M    S  +  +  G   I +  + + + +AV
Sbjct: 296 RIP-YSVFDDLMKL--SDTKKIIFSGGFCIKKEGDEVLLFKAV 335


>gi|282879019|ref|ZP_06287781.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310]
 gi|281298854|gb|EFA91261.1| tRNA(Ile)-lysidine synthetase [Prevotella buccalis ATCC 35310]
          Length = 441

 Score =  203 bits (517), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 150/410 (36%), Gaps = 50/410 (12%)

Query: 15  SLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           SL++   + LVA+SGG+DS+ LL  L ++            AI  +  LR E +  +  +
Sbjct: 16  SLLHKDELYLVALSGGADSVCLLRCLKAL-------GYHLEAIHCNFRLRGEESDRDELF 68

Query: 73  VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             ++C +L I   +  +            +  AARE RYA      K + A  +   H  
Sbjct: 69  CQELCQKLEIPLHLAHFDTRSYAQLHHVSIEMAARELRYAHFKNLCKAMGAGGVCVGHHQ 128

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET+ +   R     G+       T +   N +I RP L   R++I  +L     ++
Sbjct: 129 DDSVETILINLVRSTGIHGL-------TGIAPKNDYIYRPLLCVSRKEITDYLKTIQQNY 181

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH--- 245
             D +N     +R ++R  V            +       ++ + V++L      V    
Sbjct: 182 ITDSTNLVPDVQRNKMRLEVIPHLESINPAAQQNILQTAQRLADVVSILDGWMERVAQWK 241

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--SGKRGCVS 303
            R               +L+YLL+               + ++ +       SG+     
Sbjct: 242 PRGPYWCFPLKEVTHEYILWYLLK---------NYQFTSKQVDNIYENRNNGSGRVWTSK 292

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS----- 358
              ++IDR    L         P  IL P     +D + + + LS +   I  Q+     
Sbjct: 293 THELLIDRDQLVLAQRNNEPQKPLTILEPG-VFRYDAKLKVR-LSVTTAPISAQTVKDKR 350

Query: 359 -----YRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPF--SRFMTKFD 401
                + +   P  + P+  Q A    P    G  LL+ +   R M+ F+
Sbjct: 351 CAYMDFNQVSFPLVLRPV--QPADRFQPFGMKGTKLLSDYMTDRKMSLFE 398


>gi|114799417|ref|YP_758891.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444]
 gi|122942816|sp|Q0C5V2|TILS_HYPNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|114739591|gb|ABI77716.1| tRNA(Ile)-lysidine synthetase [Hyphomonas neptunium ATCC 15444]
          Length = 367

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 83/331 (25%), Positives = 141/331 (42%), Gaps = 14/331 (4%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+    +   +    + VAVSGGSDS+ LLI  H   + R        A++VDH LR  +
Sbjct: 12  EAALGALPDRLLDTPVGVAVSGGSDSLALLILAHRWAARRGRV---LRALTVDHGLRPES 68

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           + E   V  +C+ + I H ++  + + P+    +A R  R+A ++      +  L++T H
Sbjct: 69  RAEAEAVGRLCADMGIEHDILRLEGAAPR---QSALRRGRHAALARTIADKSGHLLLTGH 125

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSG---MCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T DDQ ET  MR+++     G+       +         ++I+RP L  RRE +R+FL  
Sbjct: 126 TADDQAETFLMRARQGSGWYGLAGMRPLSLSPVWPEGEGVFIARPLLGIRREALRAFLRD 185

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL--KMKKFQDLRVKVNNAVAMLIPKY 241
             + W +DPSN +  FERVR+RR +       + +   + +FQ LR+  + A+   +   
Sbjct: 186 EGLGWADDPSNDNPAFERVRMRRLLCPEMSRNVPVLSLVDRFQTLRMIEDGAIWRWMTAN 245

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           +      I                  L +   I  G+   P   S+ R+   + S     
Sbjct: 246 VRAGEAGIHV--ASFAGHPPERAARALGMLLQIAAGREMPPRGESLRRLAEEIVSKGDFR 303

Query: 302 -VSIGRVVIDRRANFLWITRAVRNLPTLILY 331
             ++G   I  R   + +      LP     
Sbjct: 304 GATLGGCRITARRTHICLKPECGPLPPGTAA 334


>gi|169825696|ref|YP_001695854.1| tRNA(Ile)-lysidine synthase [Lysinibacillus sphaericus C3-41]
 gi|168990184|gb|ACA37724.1| tRNA(Ile)-lysidine synthase [Lysinibacillus sphaericus C3-41]
          Length = 468

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 14/238 (5%)

Query: 8   SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            ++ F+     L    H+L+AVSGG DSM LL   H  +  +    I+  A+ VDH LR 
Sbjct: 6   KIKTFIEKEQLLQQGDHLLIAVSGGVDSMALL---HYFVQTKEHWNIRVEAVHVDHMLRG 62

Query: 65  TAKDEVR-YVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            A  E R +V   C    +        +    +K    +    R  RY    E     NA
Sbjct: 63  EASAEDRAFVQKYCDDNGVYLHATAISIPTILAKENGNIQLICRRERYRYFKEVLYETNA 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++TAH  DDQLE+V M   ++       + G+     ++    + RPFL   + +I  
Sbjct: 123 NKLVTAHHADDQLESVLMALTKNATMN--SMQGIRPQRNFE-GKTLIRPFLTVTKTEIGE 179

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +LL++ +++ ED SN+ D + R R R  V  +         ++      ++    A L
Sbjct: 180 YLLRKGLNYREDASNSKDTYVRNRFRHHVVPLLEAENPRVTEQVTHFTSQLQEDNAFL 237


>gi|284023518|ref|ZP_06377916.1| hypothetical protein Saura13_02954 [Staphylococcus aureus subsp.
           aureus 132]
          Length = 431

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|262052536|ref|ZP_06024733.1| hypothetical protein SA930_1957 [Staphylococcus aureus 930918-3]
 gi|282925584|ref|ZP_06333237.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9765]
 gi|259159583|gb|EEW44630.1| hypothetical protein SA930_1957 [Staphylococcus aureus 930918-3]
 gi|282592488|gb|EFB97500.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9765]
          Length = 431

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|253730977|ref|ZP_04865142.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253725289|gb|EES94018.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 431

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|57651385|ref|YP_185441.1| hypothetical protein SACOL0553 [Staphylococcus aureus subsp. aureus
           COL]
 gi|87161906|ref|YP_493196.1| hypothetical protein SAUSA300_0487 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194269|ref|YP_499061.1| hypothetical protein SAOUHSC_00484 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151220683|ref|YP_001331505.1| hypothetical protein NWMN_0471 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161508749|ref|YP_001574408.1| hypothetical protein USA300HOU_0503 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142299|ref|ZP_03566792.1| hypothetical protein SauraJ_11802 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258452810|ref|ZP_05700805.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5948]
 gi|262049994|ref|ZP_06022853.1| hypothetical protein SAD30_0222 [Staphylococcus aureus D30]
 gi|294850369|ref|ZP_06791102.1| cell cycle protein MesJ [Staphylococcus aureus A9754]
 gi|304380527|ref|ZP_07363203.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|61216391|sp|Q5HIG6|TILS_STAAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|57285571|gb|AAW37665.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           COL]
 gi|87127880|gb|ABD22394.1| MesJ/Ycf62 family protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201827|gb|ABD29637.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|150373483|dbj|BAF66743.1| isoleusyl-tRNA-2-lysl-cytidine synthase [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160367558|gb|ABX28529.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|257859496|gb|EEV82349.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5948]
 gi|259161929|gb|EEW46512.1| hypothetical protein SAD30_0222 [Staphylococcus aureus D30]
 gi|269940080|emb|CBI48456.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|294822793|gb|EFG39229.1| cell cycle protein MesJ [Staphylococcus aureus A9754]
 gi|302750400|gb|ADL64577.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340931|gb|EFM06855.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196192|gb|EFU26548.1| cell cycle control ATP-binding protein MesJ [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320139404|gb|EFW31282.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144181|gb|EFW35949.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313228|gb|AEB87641.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329729763|gb|EGG66160.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           21189]
          Length = 431

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|187931484|ref|YP_001891468.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|226695538|sp|B2SG31|TILS_FRATM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|187712393|gb|ACD30690.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 398

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+HI++  SGG DS  LL     +        I   AI ++H L   +     +    C
Sbjct: 16  SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++ R     G+        + +     + RP L+  + +I  F    NIS+  D SN D 
Sbjct: 129 QAIRGSGLAGLAGIPHYKELHHGG---VLRPLLKYSKIEIEGFAKLNNISYIYDDSNEDI 185

Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           ++ R  +R  +  I       +   + +  ++  + NN +  L+ + L    +    I  
Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245

Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278
           +++ +D  +   LL +       Q
Sbjct: 246 ELIKLDDDIQKNLLHLWFKQNTQQ 269


>gi|56708293|ref|YP_170189.1| PP-loop family protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670764|ref|YP_667321.1| PP-loop family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134301750|ref|YP_001121718.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224457415|ref|ZP_03665888.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254369106|ref|ZP_04985118.1| PP-loop family protein [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254370777|ref|ZP_04986782.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875114|ref|ZP_05247824.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|61216407|sp|Q5NFK3|TILS_FRATT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|123359434|sp|Q14H05|TILS_FRAT1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|166988060|sp|A4IXE6|TILS_FRATW RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|54113183|gb|AAV29225.1| NT02FT1257 [synthetic construct]
 gi|56604785|emb|CAG45864.1| PP-loop family protein [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321097|emb|CAL09247.1| PP-loop family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134049527|gb|ABO46598.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569020|gb|EDN34674.1| hypothetical protein FTBG_00586 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|157122056|gb|EDO66196.1| PP-loop family protein [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254841113|gb|EET19549.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159523|gb|ADA78914.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 398

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+HI++  SGG DS  LL     +        I   AI ++H L   +     +    C
Sbjct: 16  SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++ R     G+        + +     + RP L+  + +I  F    NIS+  D SN D 
Sbjct: 129 QAIRGSGLAGLAGIPHYKELHHGG---VLRPLLKYSKIEIEGFAKLNNISYIYDDSNEDI 185

Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           ++ R  +R  +  I       +   + +  ++  + NN +  L+ + L    +    I  
Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245

Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278
           +++ +D  +   LL +       Q
Sbjct: 246 ELIKLDDDIQKNLLHLWFKQNTQQ 269


>gi|303235677|ref|ZP_07322284.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN]
 gi|302484124|gb|EFL47112.1| tRNA(Ile)-lysidine synthetase [Prevotella disiens FB035-09AN]
          Length = 461

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 23/256 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L+ +++       L      +V +SGG+DS+ LL+ L  +            A   +  
Sbjct: 1   MLNKVKAYIEAHHLLHEDGKYIVGLSGGADSVALLLVLKHL-------GYNIEAAHCNFN 53

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR E +  +  Y   +C +L +   ++ +         +  +  AAR  RY       + 
Sbjct: 54  LRGEESNRDEEYCKKLCEKLNVPFHLIHFDTILYAELHKVSIEMAARTLRYGYFENLRRD 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I A  I  AH  DD +ET+ +   R    +G+         +   N  I RP L C R +
Sbjct: 114 IQADAICIAHHRDDSVETILLNLIRGTGMRGL-------VGIRPKNSNIVRPMLDCSRHE 166

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I  FL ++ +++  D +N  D  +R ++R  V    +  L      F +  + + N V  
Sbjct: 167 IELFLKEKGVNFVTDSTNLIDDVKRNKLRLNV----IPELRKMNPSFDNAVMCMANNVNE 222

Query: 237 LIPKYLTVHMRSIIAI 252
                 +    +  +I
Sbjct: 223 ANKIIFSTLESAFSSI 238


>gi|297831300|ref|XP_002883532.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329372|gb|EFH59791.1| hypothetical protein ARALYDRAFT_479968 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 664

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 79/310 (25%), Positives = 128/310 (41%), Gaps = 27/310 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK-FSAISVDHCL 62
           R  +  L     I + VSGG DSM L +      ++      +S G I    AI VDH L
Sbjct: 74  RMAMAGLKPHHRIALGVSGGPDSMALCVLTAKWKTEGLSCVNKSDGFIDGLVAIVVDHGL 133

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINA 119
           R+ +KDE   V    S++ I   + S  W + +P+ G L  AARE RY +IS        
Sbjct: 134 RQESKDEAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYQMISNVCFRHQI 193

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRP 168
            +++ AH  DDQ E   +R  R     G+  +     I           + + ++ + RP
Sbjct: 194 EVLLIAHHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHIKNRSILLVRP 253

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI----DLHALYLKMKKFQ 224
            L   +ED+          W EDP+N    F R R+R  + ++        L+  + + +
Sbjct: 254 LLDLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLHSGNFKSELHAVISECR 313

Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG--GQISLP 282
             R  V+     LI + +TV  +    +  + LN        L +  AA+     Q   P
Sbjct: 314 RTRSFVDKFCTDLISQTVTVTDKGYAILDLERLNPTEVKDICLSKYLAAVLQFISQRHRP 373

Query: 283 GYRSMERVML 292
              +  +++L
Sbjct: 374 VRGNTSKLLL 383


>gi|301162414|emb|CBW21959.1| putative ATP-binding PP-loop protein [Bacteroides fragilis 638R]
          Length = 435

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 109/275 (39%), Gaps = 32/275 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           IE  + F  +      +LV +SGG+DS+ LL  L S+            A   +  LR+ 
Sbjct: 10  IEKEKLFCLN----DKVLVTLSGGTDSVALLRLLLSM-------GYTCEAAHCNFHLRDK 58

Query: 65  TAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C      L I H   +   +K    +  AARE RY       +   A+
Sbjct: 59  ESDRDEAFVRRLCHESGVLLHIEHFDTTQYAAKKHISIEMAARELRYEWFETLRRQREAS 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I TAH  DD +ETV +   R     G+         +   N  I RP L   RE+I ++
Sbjct: 119 VIATAHHKDDSVETVLLNLIRGTGINGL-------LGIRPRNGNIVRPLLCLSREEIIAY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L   +  +  D +N  D + R ++R       + +      ++        D     N +
Sbjct: 172 LQYIDQDYVTDSTNLLDEYTRNKIRLNLLPLMKEINPSVKESIIRTTNYLNDAATLYNQS 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +     + LT     I A+ Q+   +   +LF +L
Sbjct: 232 IGEARKRILTPEGIRIEALLQEP--VPEAILFEVL 264


>gi|188995854|ref|YP_001930106.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277]
 gi|226695545|sp|B2RMB4|TILS_PORG3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|188595534|dbj|BAG34509.1| putative cell-cycle protein [Porphyromonas gingivalis ATCC 33277]
          Length = 454

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 124/340 (36%), Gaps = 28/340 (8%)

Query: 1   MFLSPIESVRFFVR--SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           M +S    VR  +R   L    +  +LVA+SGG+DS+ LL  L  +         +  A 
Sbjct: 1   MKISLTNRVRTTIRERKLFREGNRLVLVALSGGADSVALLCVLREL-------GYETVAA 53

Query: 57  SVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALIS 111
             +  LR   + ++  +V  +C  L +    + +       +    +  AARE RY    
Sbjct: 54  HCNFHLRGVESDEDAAFVEGLCRDLDVPLHRIDFDTVRYARERSISIEMAARELRYEWFG 113

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
              K +    +  AH  DD  ET+ +   R     G G+SG+C    Y  N  I RP L 
Sbjct: 114 LLRKELAIEYVAVAHHADDNAETMVLNLCR-----GTGISGLCGM-PYKRNDGIVRPLLD 167

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             R++I ++LL + I++  D SN D RF R  VR  +  +         +     R  + 
Sbjct: 168 ATRDEIEAYLLDQKITYRTDSSNEDTRFRRNLVRHRIMPLLKELNPSLQEALLRTRENLE 227

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
              A         H       S  I  +  T   + L                  +  V+
Sbjct: 228 GVAAFFSKATEDFHNTLRATASISIREVKETPAPFTLLYDLL----HPYGFNRDQIREVV 283

Query: 292 LFLKS--GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLI 329
             L +  G     S  R++ +R    +        +P L 
Sbjct: 284 TSLDNPPGASFFSSSHRLLRERDRLTVLPLSPKMEVPELF 323


>gi|312874948|ref|ZP_07734967.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b]
 gi|325913138|ref|ZP_08175508.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B]
 gi|311089693|gb|EFQ48118.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2053A-b]
 gi|325477559|gb|EGC80701.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 60-B]
          Length = 430

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 112/271 (41%), Gaps = 13/271 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  
Sbjct: 15  LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P+ GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 72  CQQYKLQLEETKWDTPHPENGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           +   R R+R FV      D   L     +F      + +   +L  K +  H      + 
Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEK-IRYHKLLNGIVQ 248

Query: 254 QDILNIDSTLLFYLLRVSAAIC----GGQIS 280
            + +++       L      +     G Q+ 
Sbjct: 249 VNAVDLSDFNCHQLSLYFNWLIDKEWGRQVY 279


>gi|258424455|ref|ZP_05687334.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9635]
 gi|257845324|gb|EEV69359.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus A9635]
          Length = 431

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASNEEARFLEAYCD 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   ++ ++L   +L
Sbjct: 244 SKYLEVSRQSFNDLPNSLKMVVL 266


>gi|187735920|ref|YP_001878032.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425972|gb|ACD05251.1| tRNA(Ile)-lysidine synthetase [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 334

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/331 (24%), Positives = 126/331 (38%), Gaps = 24/331 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +L  +SGG DSM LL  L               A  V+H LR  A++E  +V  
Sbjct: 15  LRSGRPVLAGISGGRDSMALLSLLS------GMPGCNLVACHVNHQLRPEAEEEEMFVLR 68

Query: 76  VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             + L I                   +  AAREAR A   + A      L+  AH  +DQ
Sbjct: 69  YAASLGIPCVRERVNVRSMAHTRGIAIEEAAREARQASFLKWAAGYPGALVALAHHRNDQ 128

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET  +   R       G+ GM     +   L + RP L   REDI S+L  R+I W ED
Sbjct: 129 QETALLHLCRGA----SGIHGMFPVSTWANGLTVVRPMLDFSREDITSYLEHRHIPWRED 184

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLK-----MKKFQDLRVKVNNAVAMLIPKYLTVHM 246
            SN    + R  +R  +    L+AL+ +       +   L  ++  A++  +        
Sbjct: 185 SSNQSAEYTRNALRHEIIP-KLNALFQRDTSLPFSRACHLENQIRTALSQALDSMNLTDP 243

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-G 305
           +  + + +  +N+    L     V   +    I      ++ RVM  L +      S+ G
Sbjct: 244 QGRLFLPK--INLLPAELRQC-AVHDYLRRQHIPDLTEDAVLRVMDILNTDGPSRTSLPG 300

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETT 336
             +  R+   L +T   R +      P +TT
Sbjct: 301 GKLAVRKEKRLLVTDTPRPVNKAEQPPADTT 331


>gi|198283303|ref|YP_002219624.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665676|ref|YP_002425891.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247824|gb|ACH83417.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517889|gb|ACK78475.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 464

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 130/340 (38%), Gaps = 28/340 (8%)

Query: 8   SVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +R  ++  + P     + VA SGG DS  LL+AL S+         +  A+ VDH    
Sbjct: 12  RLRTRLQGDLRPPRGRSLYVAYSGGGDSTALLVALLSL-------GYEIHALHVDHGWHP 64

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +    R+  +    L +  +++      P  G    AR ARYAL    A+      + T
Sbjct: 65  DSAQWARFCQEQAKALGVPFTLLHLAADTPGEGPEDQARRARYAL--MAAQLRQGDWLFT 122

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   +DQ ETV ++  R       GL+GM         L + RP L   R+ +R +L QR
Sbjct: 123 AQHREDQAETVLLQLLRGTGV--AGLAGMPRQRPLGAGL-LVRPLLDVPRQVLRDYLEQR 179

Query: 185 NISWCEDPSNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            + +  DP+N D R++RVR+RR     ++++      + + +  D    +          
Sbjct: 180 QLPFLNDPANADMRYDRVRIRRILLPQLQELGWPHATISIARAADNLADMGEIATDWFDL 239

Query: 241 YLTVHMRSIIAISQDILNID------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
               +      +S ++L ++           + LR        +IS+PG   +E +   +
Sbjct: 240 CWQQYRADHPGLSVEVLPLEYLHTLSVAAQRFFLRGWLQSL--RISVPGRERLEALRDAV 297

Query: 295 KSGKRG-CVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
             G+ G  +         +   L      R          
Sbjct: 298 MRGRGGARIQWEGGQAWLQGGLLRAWPQPRVTAEKEWEAG 337


>gi|297180756|gb|ADI16963.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [uncultured Sphingobacteriales bacterium
           HF0010_19H17]
          Length = 441

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 123/326 (37%), Gaps = 40/326 (12%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     ILVA+SGG DS+ LL  +H              A   +  LR E +  + ++V 
Sbjct: 14  LGKDDKILVALSGGLDSVALLYLMH-------MSGFYVEAAHCNFNLRGEESDGDAQFVK 66

Query: 75  DVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++C+ L +   V ++  +         +  AAR+ RY    E         I TAH  DD
Sbjct: 67  ELCAALGLPVHVKNFDTAAHANDFGVSIQMAARDLRYVWFEELRSKNGLAYIATAHHRDD 126

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q+ET+ +   R     G GL GM           I RP L   R  +  ++ +   ++ E
Sbjct: 127 QVETLLINLSR-----GTGLKGMQGMKSLQN--KIIRPLLFTDRSALEVWMQKEKHAYRE 179

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN   ++ R ++R  V  I L  L         L   V   V         +    + 
Sbjct: 180 DSSNASIKYSRNKLRHQVIPI-LKTLNP------SLSTTVQENVERFAGSETNLSFL-LE 231

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISL---------PGYRSMERVMLFLKSGKRGC 301
              Q+I+   ST   ++L    A       L           ++++E ++   +SGK   
Sbjct: 232 KERQNIVLQKSTEQHFILSALTAFPSPSSVLYYFISDSGFHDWKAIENIL-NSESGKIIY 290

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPT 327
                ++ DR    + + R  + +  
Sbjct: 291 SQTHELLKDRE---VLVLREKKTVEQ 313


>gi|15923499|ref|NP_371033.1| hypothetical protein SAV0509 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926186|ref|NP_373719.1| hypothetical protein SA0467 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148266968|ref|YP_001245911.1| hypothetical protein SaurJH9_0531 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393014|ref|YP_001315689.1| hypothetical protein SaurJH1_0544 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156978837|ref|YP_001441096.1| hypothetical protein SAHV_0506 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253315222|ref|ZP_04838435.1| hypothetical protein SauraC_03485 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255005302|ref|ZP_05143903.2| hypothetical protein SauraM_02505 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794250|ref|ZP_05643229.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9781]
 gi|258407233|ref|ZP_05680378.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9763]
 gi|258420800|ref|ZP_05683736.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9719]
 gi|258429626|ref|ZP_05688300.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9299]
 gi|258446104|ref|ZP_05694265.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6300]
 gi|258448012|ref|ZP_05696142.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6224]
 gi|258453842|ref|ZP_05701815.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5937]
 gi|269202129|ref|YP_003281398.1| hypothetical protein SAAV_0456 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895117|ref|ZP_06303337.1| cell cycle protein MesJ [Staphylococcus aureus A8117]
 gi|295407399|ref|ZP_06817196.1| cell cycle protein MesJ [Staphylococcus aureus A8819]
 gi|296276162|ref|ZP_06858669.1| hypothetical protein SauraMR_07424 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297246479|ref|ZP_06930319.1| cell cycle protein MesJ [Staphylococcus aureus A8796]
 gi|61216721|sp|Q99W94|TILS_STAAM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217307|sp|Q7A7A6|TILS_STAAN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|13700399|dbj|BAB41697.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246277|dbj|BAB56671.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147740037|gb|ABQ48335.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149945466|gb|ABR51402.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720972|dbj|BAF77389.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257788222|gb|EEV26562.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9781]
 gi|257841191|gb|EEV65640.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9763]
 gi|257843192|gb|EEV67605.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9719]
 gi|257849685|gb|EEV73652.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A9299]
 gi|257855081|gb|EEV78023.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6300]
 gi|257858702|gb|EEV81575.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A6224]
 gi|257864013|gb|EEV86768.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus A5937]
 gi|262074419|gb|ACY10392.1| hypothetical protein SAAV_0456 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282762535|gb|EFC02675.1| cell cycle protein MesJ [Staphylococcus aureus A8117]
 gi|285816208|gb|ADC36695.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus 04-02981]
 gi|294967756|gb|EFG43788.1| cell cycle protein MesJ [Staphylococcus aureus A8819]
 gi|297176666|gb|EFH35928.1| cell cycle protein MesJ [Staphylococcus aureus A8796]
 gi|312829004|emb|CBX33846.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315128637|gb|EFT84640.1| hypothetical protein CGSSa03_01650 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329725061|gb|EGG61556.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           21172]
          Length = 431

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYIRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|298693839|gb|ADI97061.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 431

 Score =  203 bits (516), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|330964160|gb|EGH64420.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 441

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 107/306 (34%), Gaps = 20/306 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    S       AI V H L+  A     +   VC  L +A
Sbjct: 26  VGFSGGLDSTVLLHLLAELARRESLPA--LHAIHVHHGLQAAADAWPEHCRQVCQALDVA 83

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V  K  +P   L  AAR+ARY   ++  +     +++T    DDQ ET+  R  R  
Sbjct: 84  FELVRVKV-EPGASLEQAARQARYTAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       ++RP L   R ++ S+  Q+ + W EDPSN + +F R  
Sbjct: 141 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARQQGLRWVEDPSNDNQQFSRNF 197

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L          +        L +    
Sbjct: 198 LRSQVLPLLTSRWPQATASLARTAGHLAEAQQLLDELAAQDVASAQATTPFAWLGLPVLN 257

Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312
           L  + R+S A     +       + R+           +       R    +    + R 
Sbjct: 258 LGPIARLSGARQRNVMR-HWLAPLTRLPDTDHWAGWEALRDAAQDARPLWRLADGALHRA 316

Query: 313 ANFLWI 318
              +W 
Sbjct: 317 QGCIWW 322


>gi|115352161|ref|YP_774000.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD]
 gi|115282149|gb|ABI87666.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria AMMD]
          Length = 473

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 143/403 (35%), Gaps = 31/403 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALADLPADARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   V +      RL +          +    G+ A+ARE RYA +    +      +  
Sbjct: 69  ADAWVAHAQATAERLGVTFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVAALWV 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RPFLR  R  +  +  QR
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPFLRLLRAQLERYAAQR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
            ++W +D SN D R+ R  +R  V    L  L +    F+D   +     A    L+   
Sbjct: 188 ELAWIDDESNADTRYARNALRIDV----LPTLAMHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294
             +            L+ D+ + F       LLR      G    S     +M R +   
Sbjct: 244 AELDFAGAARDDGRALSRDALVAFDDTRGANLLRFWMRRLGLPGASAGRLANMMRQLRDA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++        P    T +  PE +  WDG+  +      
Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSADPADDGTGMPRPESSLAWDGQEVWHVPAWR 363

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
            + +     +  +A     +P  + + A   + ++ GG+ L  
Sbjct: 364 GTFVF----APAEAGSDGAVPDALLRGATLVVRARAGGERLRT 402


>gi|329731094|gb|EGG67466.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           21193]
          Length = 431

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIHRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|89256102|ref|YP_513464.1| PP-loop family protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314576|ref|YP_763299.1| PP-loop superfamily ATPase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502120|ref|YP_001428185.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010788|ref|ZP_02275719.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           tularensis subsp. holarctica FSC200]
 gi|290954514|ref|ZP_06559135.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312030|ref|ZP_06802845.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325399|sp|Q0BMM2|TILS_FRATO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|122500940|sp|Q2A488|TILS_FRATH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|166988058|sp|A7NB76|TILS_FRATF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|89143933|emb|CAJ79152.1| PP-loop family protein [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129475|gb|ABI82662.1| probable PP-loop superfamily ATPase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252723|gb|ABU61229.1| tRNA(Ile)-lysidine synthase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 398

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 101/264 (38%), Gaps = 13/264 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+HI++  SGG DS  LL     +        I   AI ++H L   +     +    C
Sbjct: 16  SPSHIIIGYSGGVDSSVLLNISKEL-------DIPLIAIYINHNLHRDSLKWQIHCQQTC 68

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  +     S           A A + R A   +  +  +  L++  H  DDQ ET  +
Sbjct: 69  QKYNLQFISHSLDKVPKGESFEAWASKQRMAFFQKIMQQYSKPLLLLGHHQDDQAETFLI 128

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++ R     G+        + +     + RP L+  + DI  F    NIS+  D SN D 
Sbjct: 129 QAIRGSGLAGLASIPHYKELHHGG---VLRPLLKYSKIDIEGFAKLNNISYIYDDSNEDI 185

Query: 198 RFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           ++ R  +R  +  I       +   + +  ++  + NN +  L+ + L    +    I  
Sbjct: 186 KYRRNLIRNQIIPILQQVNPNISQTLSRSANICAESNNILQKLLTERLQSISQDTNLIIS 245

Query: 255 DILNIDSTLLFYLLRVSAAICGGQ 278
           +++ +D  +   LL +       Q
Sbjct: 246 ELIKLDDDIQKNLLHLWFKQNTQQ 269


>gi|312872556|ref|ZP_07732624.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1]
 gi|311091918|gb|EFQ50294.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2062A-h1]
          Length = 430

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 108/255 (42%), Gaps = 9/255 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  
Sbjct: 15  LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 72  CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 189

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252
           +   R R+R FV      D   L     +F      + +   +L  K      +  I+ +
Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 249

Query: 253 SQDILNIDSTLLFYL 267
           +   L+  +     L
Sbjct: 250 NAADLSDFNCQQLSL 264


>gi|301067523|ref|YP_003789546.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus casei str. Zhang]
 gi|300439930|gb|ADK19696.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus casei str.
           Zhang]
          Length = 436

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/332 (23%), Positives = 126/332 (37%), Gaps = 17/332 (5%)

Query: 10  RFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           + F R        +LVAVSGG DSM LL              +     + DH LR  ++ 
Sbjct: 4   KLFQRFGFAPHTRVLVAVSGGVDSMVLLNLAVKAA------DLDVVVATFDHRLRPESQQ 57

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           E  +V     +L++      W+ S  Q    AAAR+ARYA ++  A   +A ++MTAH  
Sbjct: 58  EQAFVVAAAQQLQVPVVTGQWRRSDGQPTSEAAARQARYAFLAATAAEQHAEVVMTAHHA 117

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET+  R  R        L G+     +     + RP L   +  IRS+  Q N+ +
Sbjct: 118 DDQLETILFRLARSGDP--AALIGIRADRTWH-GRRLVRPLLPYSKAMIRSYADQHNVRF 174

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           CED SN D  + R ++R  V           +   Q   ++    +A+   +      R 
Sbjct: 175 CEDSSNADPHYARNQLRHQVIPAFKKQNTQLLAHIQTFTMEQTGLLALAEAQLAEWLQRL 234

Query: 249 IIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
            +     +  + +     +  LL             P    +  V+  L   K     +G
Sbjct: 235 QVDDATFNWRVASPQPEAVQRLLLKKILQQWQPNVDPQL--LSPVLASLSGTKERRFDLG 292

Query: 306 R--VVIDRRANFLWITRAVRNLPTLILYPEET 335
               +  +    + +TR     P      ++ 
Sbjct: 293 GGISIAVQSEQIVRLTRQAPVKPVTFTKLDQQ 324


>gi|256819419|ref|YP_003140698.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga ochracea DSM 7271]
 gi|256581002|gb|ACU92137.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga ochracea DSM 7271]
          Length = 431

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 136/358 (37%), Gaps = 44/358 (12%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIA 83
           A+SGG DS+ L   L++         I+      +  LR   + D+  +V    + L + 
Sbjct: 16  AISGGIDSVVLTHLLYT-------HGIELLLAHCNFQLRGRESDDDEAFVRTFAAELSVP 68

Query: 84  HSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             V  +      S  Q     AARE RY    E A T     I TAH  +D LET ++  
Sbjct: 69  LEVKRFDTHQYASSHQLNTQLAARELRYQWFDELASTHFCDAIATAHHANDNLETFFINL 128

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G+         + +    I RP L+  R+ I  +   + + W ED SN  +++
Sbjct: 129 SRGSGLEGL-------LGIPEEKDTIIRPLLQFSRQQIYEYAQAKRLKWREDSSNETNKY 181

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL------TVHMRSIIAIS 253
            R  +R  +           ++ F   +  ++ + A  I  Y+           + I I 
Sbjct: 182 VRNVIRHDIIPKLALVHPNYLENFNQTQEYLHQS-ARFIDFYIGKLKETCFEGHNPIQID 240

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            + L     L F L ++      G +     + ++ ++L  ++GK+        ++ +  
Sbjct: 241 IEKLQAVPELDFVLHKLFYPYGFGNV-----KDLKNLLLNAEAGKQVLSPTH--ILIKDN 293

Query: 314 NFLWIT-RAVRNLPTLILYPEETTVWD----------GRYQFQNLSDSLIQIGPQSYR 360
             LW+     +   +L++  +   V+D          G+ + +N   + I +     +
Sbjct: 294 TCLWLKPNEAKRSLSLLISEDMAEVYDPVHLRFEFIEGKVKVKNPIPTEIYVDADKLQ 351


>gi|49482736|ref|YP_039960.1| hypothetical protein SAR0510 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257424621|ref|ZP_05601049.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427287|ref|ZP_05603688.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429924|ref|ZP_05606310.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432626|ref|ZP_05608988.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435530|ref|ZP_05611580.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282903095|ref|ZP_06310987.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282904884|ref|ZP_06312744.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282907831|ref|ZP_06315669.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910147|ref|ZP_06317953.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913337|ref|ZP_06321128.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918290|ref|ZP_06326030.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C427]
 gi|282923041|ref|ZP_06330727.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C101]
 gi|283957299|ref|ZP_06374757.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500386|ref|ZP_06666238.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293509325|ref|ZP_06668041.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus M809]
 gi|293515913|ref|ZP_06670603.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295427043|ref|ZP_06819680.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591580|ref|ZP_06950217.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus MN8]
 gi|61217256|sp|Q6GJG2|TILS_STAAR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|49240865|emb|CAG39532.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272648|gb|EEV04768.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275938|gb|EEV07406.1| isoleucyl-tRNA synthetase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279440|gb|EEV10035.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282491|gb|EEV12624.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285167|gb|EEV15284.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314560|gb|EFB44947.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C101]
 gi|282317856|gb|EFB48225.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus C427]
 gi|282322808|gb|EFB53128.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325995|gb|EFB56301.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282328307|gb|EFB58582.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282332001|gb|EFB61510.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596521|gb|EFC01481.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           C160]
 gi|283791223|gb|EFC30033.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290921321|gb|EFD98379.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096346|gb|EFE26606.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467870|gb|EFF10380.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus M809]
 gi|295129046|gb|EFG58675.1| cell cycle protein MesJ [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297575449|gb|EFH94166.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312436401|gb|ADQ75472.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193871|gb|EFU24265.1| hypothetical protein CGSSa00_12597 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 431

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRNGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|170723226|ref|YP_001750914.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida W619]
 gi|169761229|gb|ACA74545.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida W619]
          Length = 426

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 67/305 (21%), Positives = 102/305 (33%), Gaps = 18/305 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS  LL  L      R        AI + H L+  A     + + VC RL I 
Sbjct: 15  IAFSGGLDSTVLLHWLADYA--RIHATPPLHAIHIHHGLQPAADAWPGHCTAVCERLGIE 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
            +V+  +       L  AAR+ARYA            ++ T    DDQ ET+  R  R  
Sbjct: 73  LTVIHVQVPA-GASLEQAARDARYAAFETVLGA--GDVLFTGQHCDDQAETLLFRLLRGA 129

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R  +  +     + W EDPSN D  F R  
Sbjct: 130 GLRGLAAMPQQRPL---GRGHVVRPLLNVSRAQLHEYAQTHGLIWAEDPSNADTAFARNF 186

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSIIAISQDILNID 260
           +R  V  +         +        +  A   +  L    L V  +   AI   + ++D
Sbjct: 187 LRAEVFPLLQKRWPKASQALARGADHLGEALGLLDELAQADLAVARKGAPAIWSGLDSLD 246

Query: 261 STLLFYLL-----RVSAAICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
              L  L               +  LP  R       +       +    +    ++R  
Sbjct: 247 LASLAALSPARQRNALQYWLSLRTRLPDTRHWAGWAALRDAAVDSQPAWQLTDGKLERSH 306

Query: 314 NFLWI 318
             +W 
Sbjct: 307 GRIWW 311


>gi|298373197|ref|ZP_06983187.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298276101|gb|EFI17652.1| tRNA(Ile)-lysidine synthase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 445

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 124/335 (37%), Gaps = 32/335 (9%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ +  +  F+     L     +LVAVSGG DS+ LL  L            + +    +
Sbjct: 1   MTFLRKLNNFINKNNLLSDNRKLLVAVSGGIDSVVLLDMLVRC-------GYRCAVAHCN 53

Query: 60  HCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114
             LR   + ++ ++V  +  +  I   V  +            +  AAR+ RY       
Sbjct: 54  FHLRGNESDNDEQFVRALAQKYDIPLFVRQFDTIQTAKNDNISIEMAARKLRYDWFEVLV 113

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           KT +   +  AH  +D  ETV +   R    +G+         +      + RP L   R
Sbjct: 114 KTNDFQSVAVAHHKNDNAETVLLNMARGSGLQGLA-------GIRARRGSVVRPLLCFDR 166

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVN 231
           E+I  +    NI  C D +NTD  F+R R+R  +    L   +    ++ +F  +  + N
Sbjct: 167 EEIELYAKLNNIEHCTDRTNTDTEFQRNRIRHNIIPEFLAINNNFVEQIDRFAAIMREYN 226

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF--YLLRVSAAICGGQISLPGYRSMER 289
           +         +  H   I+        ID  LL      R+        I+LP    ++ 
Sbjct: 227 D----FFDYEIKKHKTDIVNYQPHKTEIDIPLLLEKRFARIILFDIIKDINLP-VSILDE 281

Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
           +   + S     ++I    I +  + L I   V N
Sbjct: 282 IYKLIHSQTGKYITIYNKRIIKNRDKLLIVDEVDN 316


>gi|319891462|ref|YP_004148337.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161158|gb|ADV04701.1| tRNA(Ile)-lysidine synthetase [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 429

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 18/247 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           ++     HI+VAVS G DSM LL   H +L D +    + + + V H LRE ++ E  ++
Sbjct: 3   QNWKATDHIVVAVSTGIDSMVLL---HQLLYDETLTYRQLTCLHVHHGLREASEQEATFI 59

Query: 74  SDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
              C +  I   +     S        +   ARE RY         ++A  ++TAH  DD
Sbjct: 60  QHYCEQHDIPFYMKRLDLSDVVAEGRSIQNDAREMRYQWFDTMMHQLDADGLLTAHHEDD 119

Query: 131 QLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           Q+ET++ R     + +  +G+S    TI       + RP L   +  IR++  Q ++ + 
Sbjct: 120 QVETIFYRLFTGKSTRSSLGMS----TIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYF 175

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV-------KVNNAVAMLIPKYL 242
           ED SN ++ + R  +R  +         LK ++   L+         + + V   I +++
Sbjct: 176 EDTSNANNTYVRNDIRNRILPQIDENAQLKSQQLLKLKAWYDEAFMLMQHEVDNFIERFV 235

Query: 243 TVHMRSI 249
           T +  S 
Sbjct: 236 TTNAHSF 242


>gi|209965092|ref|YP_002298007.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum
           centenum SW]
 gi|209958558|gb|ACI99194.1| tRNA(Ile)-lysidine synthetase, TilS, putative [Rhodospirillum
           centenum SW]
          Length = 453

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 153/386 (39%), Gaps = 24/386 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V VSGG DS+ L++   +    R        A++VDH LR  +  E   V    +   
Sbjct: 33  LAVGVSGGRDSLALVLLADAWARARGG---SVLALTVDHALRPESAAEAAQVGAWMAARG 89

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I H+V+ W+  KP  G+  AAR ARYAL+    +   A  ++  H  +DQ ETV +R+ R
Sbjct: 90  IRHAVLRWEGQKPSGGVQQAARAARYALLEARCRAEGALHLLLGHQREDQAETVLLRAAR 149

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G  L+GM         L + RP L   R  + +        W +DPSN  DRF R
Sbjct: 150 SSGPDG--LAGMAAVRELA-GLRLLRPLLDIPRVRLAATCEALGQPWLDDPSNLSDRFAR 206

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-NID 260
            R+RR          + +       R  +++A A ++     ++      ++   L +  
Sbjct: 207 GRLRRA-GAAGTEEPWQRALAAGRTRAALDDAAAAVLAGQAALYPEGWGEVAAAALCDPP 265

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK---------------SGKRGCVSIG 305
             +   +L     + GG    P    ++R++  L+               +      ++ 
Sbjct: 266 EDVARRVLLRLLQVVGGAALPPRSARLDRLLAALRRSGAAGSGGGGDKEGTALSRGATLH 325

Query: 306 RVVIDRRANFLWITRAVRNL-PTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
             ++        I R  R + P + +    + +WDGR++        + +G      A +
Sbjct: 326 GCLVVPSRAGWRILREPRAVSPPVEVVSGASVLWDGRFRIAWNGAGSVTVGALGEGAAAL 385

Query: 365 PSGIPPIIAQRALSSMPSKEGGKPLL 390
           PS   P +      ++P+      +L
Sbjct: 386 PSDGSPRLPALVRRTLPALRRDGRVL 411


>gi|325473901|gb|EGC77089.1| hypothetical protein HMPREF9353_01437 [Treponema denticola F0402]
          Length = 454

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 35/343 (10%)

Query: 1   MFLSPIESVRFFVRSL----VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           M  S ++ V     SL      P  +L+AVSGG+DSM +L A   + SD +    +   +
Sbjct: 1   MAKSFLKDVLLGFSSLCDRSAAPLRLLLAVSGGADSMAMLSAFLELKSDINA---EIFVL 57

Query: 57  SVDHCLRETAK--DEVRYVSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYA 108
           +V+H +R   +   + ++V + C          I  + V  +    +TG+  AAR  RY 
Sbjct: 58  TVNHNIRPEKETLGDAQFVLNFCKNKCPCILAEIPKNTVFDEAGNRKTGIEDAARFLRYN 117

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
              + A ++NA  I+TAH  +D  ETV MR  +    +   L G+             RP
Sbjct: 118 EFEKAADSLNADYILTAHNKNDNYETVLMRLFQGSEPE--ALMGIS-----PRRGRFIRP 170

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            L   R +I  +L ++NI W ED +N +  + R +VR  +  + L   +   +   D  +
Sbjct: 171 MLNISRSEIEEYLKEKNIPWREDATNLETSYLRNKVRHNLLPV-LSICFDGWQSGLDKSL 229

Query: 229 KVNNAVAML-IPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQI 279
               A     I  Y T     ++   ++         L+++  L    L+    +  G+ 
Sbjct: 230 AKIKAQNDFVIASYKTKKEEWVLDKKEECCRCKFLFFLSLEEALKLKFLQEGLILLKGKR 289

Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322
            +P Y   + +M    S  +  +  G   I +  + + + +AV
Sbjct: 290 RIP-YSVFDDLMKL--SDTKKIIFSGGFCIKKEGDEVLLFKAV 329


>gi|149183227|ref|ZP_01861672.1| hypothetical protein BSG1_17246 [Bacillus sp. SG-1]
 gi|148849060|gb|EDL63265.1| hypothetical protein BSG1_17246 [Bacillus sp. SG-1]
          Length = 467

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 17/253 (6%)

Query: 2   FLSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
            L+    V  F+   +L+     IL AVSGG DS+ LL  L+     R+   +K +A+ V
Sbjct: 1   MLTYERKVTAFITKHNLIQDGDSILAAVSGGPDSLSLLHFLNKY---RNLWNVKVAAVCV 57

Query: 59  DHCLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEH 113
           DH  R E + +E+ +V   C  + I        V       + GL   AR ARY L +  
Sbjct: 58  DHMFRGEQSYEELLFVKKTCEEMDIPFFGERLNVQGMLDDQKAGLQEGARNARYHLFARL 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K    T +   H  DDQ+ET+ M+  R  +  G    G+     +     I RP L   
Sbjct: 118 IKDEGFTKLAFGHHGDDQVETILMQLTRGSS--GRAKIGIPVQRDF-YGARIIRPLLCLS 174

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKV 230
           +E+I  +  +  +    DPSN    + R R R+ V      +   ++LK ++F +   + 
Sbjct: 175 KEEILKYCSETGLQPKFDPSNEKKDYTRNRFRQEVLPFLKGENPLVHLKFQQFSEEAAED 234

Query: 231 NNAVAMLIPKYLT 243
            + +  L  + L 
Sbjct: 235 ESFLRSLAEEKLE 247


>gi|323465368|gb|ADX77521.1| tRNA(Ile)-lysidine synthetase, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 429

 Score =  202 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 18/247 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           ++     HI+VAVS G DSM LL   H +L D +    + + + V H LRE ++ E  ++
Sbjct: 3   QNWKATDHIVVAVSTGIDSMVLL---HQLLYDETLTYRQLTCLHVHHGLREASEQEATFI 59

Query: 74  SDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
              C +  I   +     S        +   ARE RY         ++A  ++TAH  DD
Sbjct: 60  QHYCEQHDIPFYMKRLDLSDVVAEGRSIQNDAREMRYQWFDTMMHQLDADGLLTAHHEDD 119

Query: 131 QLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           Q+ETV+ R     + +  +G+S    TI       + RP L   +  IR++  Q ++ + 
Sbjct: 120 QVETVFYRLFTGKSTRSSLGMS----TIEARNGYRLYRPLLNTSKHVIRAYQQQHDVPYF 175

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV-------KVNNAVAMLIPKYL 242
           ED SN  + + R  +R  +         LK ++   L+         + + V   I +++
Sbjct: 176 EDTSNASNTYVRNDIRNRILPQIDENAQLKSQQLLKLKAWYDEAFMLMQHEVDNFIERFV 235

Query: 243 TVHMRSI 249
           T +  S 
Sbjct: 236 TTNAHSF 242


>gi|260551924|ref|ZP_05825786.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624]
 gi|260405327|gb|EEW98822.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. RUH2624]
          Length = 466

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 75/310 (24%), Positives = 130/310 (41%), Gaps = 19/310 (6%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +     +  L+  SGG DSM LL  ++ +   +        AI +DH L+E + +  + 
Sbjct: 24  AQEFSENSSFLIGCSGGMDSMLLLHLMNQIFPQK------IRAIYIDHQLQEQSAEWGKL 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V+   + L I++ +   + S     L A AR+ARY    +H +     +++ AH   DQ 
Sbjct: 78  VASQATSLNISYIIQKVQISD--GNLEAQARQARYQAYQQHLQQN--EILLLAHHQQDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +R        G+      D   Y  N+ I RPFL   RE I S+  Q  + + +DP
Sbjct: 134 ETAILRLLSGTGVDGLAAMQAID---YRENMTIWRPFLDLTREQIASWAAQLEVKYIDDP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            N D  ++RV  R  +    L   + KM++       +    + ++ + L    +   + 
Sbjct: 191 MNYDTHYDRVWCREELWP-FLSKRFPKMQQALSRTSYLMQDASEILEEVLKNDWQYSGSA 249

Query: 253 SQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307
               L   S L F   R  +SA + G     P +  +ER+   ++  KS  +  +   + 
Sbjct: 250 DYLDLTKLSELSFARQRQLLSAWMKGDGQYRPAFEMVERLKKEVIDSKSDAQAALHWNQF 309

Query: 308 VIDRRANFLW 317
              R  N L+
Sbjct: 310 YYVRYQNILY 319


>gi|34541632|ref|NP_906111.1| hypothetical protein PG2046 [Porphyromonas gingivalis W83]
 gi|61216584|sp|Q7MTC4|TILS_PORGI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|34397950|gb|AAQ67010.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 454

 Score =  202 bits (515), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 116/325 (35%), Gaps = 26/325 (8%)

Query: 1   MFLSPIESVRFFVR--SLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           M +S    VR  +R   L       +LVA+SGG+DS+ LL  L  +         +  A 
Sbjct: 1   MKISLTNRVRTTIRERKLFREGDRLVLVALSGGADSVALLCVLREL-------GYETVAA 53

Query: 57  SVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALIS 111
             +  LR   + ++  +V  +C  L +    + +       +    +  AARE RY    
Sbjct: 54  HCNFHLRGVESDEDAAFVERLCRDLDVPLHRIDFDTVRYARERSISIEMAARELRYEWFG 113

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +  K +    +  AH  DD  ET+ +   R     G G+SG+C    Y  N  I RP L 
Sbjct: 114 QLRKELAIEYVAVAHHADDNAETMVLNLCR-----GTGISGLCGM-PYKRNDGIVRPLLD 167

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             R++I ++LL + I++  D SN D RF R  VR  +  +         +     R  + 
Sbjct: 168 ATRDEIEAYLLDQKITYRTDSSNEDTRFRRNLVRHRIMPLLKELNPSLQEALLRTRENLE 227

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
              A         H       S  I  +  T   + L                  +  V 
Sbjct: 228 GVAAFYSKATEDFHNTLRATSSISIREVKETPAPFTLLYDLL----HPYGFNRDQIREVA 283

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFL 316
             L +            + R  + L
Sbjct: 284 TSLDNPPGASFFSSSHRLLRERDRL 308


>gi|319760425|ref|YP_004124363.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318039139|gb|ADV33689.1| tRNA(Ile)-lysidine synthase [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 535

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 135/319 (42%), Gaps = 25/319 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFG------KIKFSAISVDHCLRETAKDEVRYV 73
            ++L++ SGG DS  LL  L ++  +           +   A+ V H L E A D   + 
Sbjct: 33  RNLLLSYSGGLDSTVLLDILTTLTKNSQIWMKSRKFPLFLKAVYVHHGLNEKADDWANHC 92

Query: 74  SDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +  C    +  +++    +   K ++ + + AR+ RY ++ ++       +++TAH  DD
Sbjct: 93  AHQCQIRDVPFNILYIQYFNFCKKRSNVESLARKLRYQVLYDYLNVNVEEILLTAHHMDD 152

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           QLETV +  +R       GLSG+   +   YD    + RP L C R  +  +  +R + W
Sbjct: 153 QLETVLLALKRGSGP--AGLSGISREVWLNYDYRYRVLRPLLGCSRGQLEEYAHRRKLIW 210

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             D +N + RF+R  +R  V  + L+  +    K      ++      L+ + L   + +
Sbjct: 211 INDDTNVNIRFDRNFLRIQVIPL-LNKRWPAFNKVVTRTAQLCRNQENLLRELLLETLNT 269

Query: 249 IIAISQDILNID-----STLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRG 300
           ++ ++  +  +       +    LLR           +P YR ++ +       K   + 
Sbjct: 270 LVDVNGALFFLPLLKYSHSKRQALLRFWLRNF--FKDMPSYRLLQCIWTEVALSKVDSKP 327

Query: 301 CVSIG-RVVIDRRANFLWI 318
            +++G   +  R    L+I
Sbjct: 328 VLNLGKNHICCRFRKKLYI 346


>gi|282915827|ref|ZP_06323595.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283768944|ref|ZP_06341853.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           H19]
 gi|282320318|gb|EFB50660.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283461125|gb|EFC08211.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           H19]
          Length = 431

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +    +  I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKDYQIYRPLLAVSKKEIKQFQERNHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|260911822|ref|ZP_05918389.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634033|gb|EEX52156.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 461

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 139/358 (38%), Gaps = 47/358 (13%)

Query: 3   LSPIES-VRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           +  IE  VR ++    L+ P+   LVA+SGG+DS+ L   L  +         K  A+  
Sbjct: 1   MKKIEREVRQYIDRHDLLSPSGRYLVALSGGADSVALFRILLRL-------DYKVEAVHC 53

Query: 59  DHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEH 113
           +  LR E +  +  +  ++C    +    V +  ++     +  +  AARE RY    + 
Sbjct: 54  NFKLRGEESFRDEIFCENLCREHGVTFHTVHFDTTEYAALHKLSIEMAARELRYNHFEKL 113

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
              +N   I  AH  DD +ET+ +   R     G GLSG+        N ++ RP L   
Sbjct: 114 RNDLNMDGICVAHHKDDNVETMLINLVR-----GTGLSGLTGMTP--QNGYVLRPLLAVS 166

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDL 226
             D+  +L + N  +  D +N    F R ++R         +       +   +++  + 
Sbjct: 167 HTDLLEYLQELNQPYVTDSTNLATDFTRNKIRLTLVPLLEELNPAATDNIAKTIERLAEA 226

Query: 227 RVKVNNAVAMLIPKYLTVH---MRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQIS 280
               N+A+       + V     R  + IS   L        +LF L+            
Sbjct: 227 EKVFNHALKKHAKDVIVVEEETPRWRLGISIGKLQQTPSPEYVLFQLIHPLG-------F 279

Query: 281 LPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
            P    +E++   L  ++GK    S   +VIDR+   +  +     L   +  PEE T
Sbjct: 280 TP--AQIEQIAQSLDQQTGKLWQSSKFTLVIDRKTLLIEESITADELARTMRIPEEGT 335


>gi|322420025|ref|YP_004199248.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M18]
 gi|320126412|gb|ADW13972.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M18]
          Length = 458

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 144/396 (36%), Gaps = 42/396 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++VAVSGG+DS+ LL  L  +  +R    +      ++HCLR   +  + ++V+D+ +R 
Sbjct: 20  VVVAVSGGADSVALLDILTRLDEER----LNLIVAHLNHCLRGAESDADEQFVADLAARY 75

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           ++    +        +     L  A R ARYA   E A+   A  I  AH  DDQ ETV 
Sbjct: 76  QLPFLAIRVDVASLAAADGLSLEDAGRRARYAFFHEVARRRGAGSITVAHHLDDQAETVL 135

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +R  R     G GLS M        +  + RP L+  R ++  +L  R +SW  D +N D
Sbjct: 136 IRLLRGAG--GAGLSAMAAV----GDNLVKRPLLQVSRCELEGYLNNRGLSWRTDSTNAD 189

Query: 197 DRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
               R  +R  +              L    +        +++       +  +V    I
Sbjct: 190 TTILRNSIRHELIPALRKYNPRITERLAATAEILASDEELLDHLTGNAFARLASVEGDGI 249

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV--SIGRV 307
           +     +L     L   L R S     G +       +E +     S +        G +
Sbjct: 250 VFGVGALLQEHRGLRLRLYRRSLREQRGDLMRIALTHLEAIDRLASSSRPNASLKLPGEL 309

Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK-ADVPS 366
            ++R  + L  T A+  +               R++     +   ++   +      VP 
Sbjct: 310 RVERCYDRLRFTCALPPVAE-------------RWEQVIPGEGSHRLPTGATLSVLRVPP 356

Query: 367 GIPPIIAQRALSSMPSKEGGKPLLA----PFSRFMT 398
                   + ++ + +     P LA    P  RF  
Sbjct: 357 PETLATGSKRVTYLSADAAPLPWLARSFTPGDRFTP 392


>gi|259501000|ref|ZP_05743902.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus iners DSM 13335]
 gi|302190551|ref|ZP_07266805.1| tRNA(Ile)-lysidine synthase [Lactobacillus iners AB-1]
 gi|259167694|gb|EEW52189.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus iners DSM 13335]
          Length = 430

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 9/255 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  
Sbjct: 15  LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 72  CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWINNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252
           +   R R+R FV      D   L     +F      + +   +L  K      +  II +
Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLSGIIQV 249

Query: 253 SQDILNIDSTLLFYL 267
           +   L+  +     L
Sbjct: 250 NAADLSDFNCHQLSL 264


>gi|312871576|ref|ZP_07731669.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a]
 gi|311092971|gb|EFQ51322.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 3008A-a]
          Length = 430

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 108/255 (42%), Gaps = 9/255 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  
Sbjct: 15  LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 72  CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 189

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252
           +   R R+R FV      D   L     +F      + +   +L  K      +  I+ +
Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 249

Query: 253 SQDILNIDSTLLFYL 267
           +   L+  +     L
Sbjct: 250 NAADLSDFNCQQLSL 264


>gi|169797140|ref|YP_001714933.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE]
 gi|169150067|emb|CAM87961.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AYE]
          Length = 467

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 19/310 (6%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +     +  L+  SGG DSM LL  +  +   +        AI +DH L++ + +    
Sbjct: 24  AQEFSEKSSFLIGCSGGMDSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEV 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V+   + L I + +   + +     L A AR+ARY    +H +     +++ AH   DQ 
Sbjct: 78  VATQATILNIPYIIQKVQIAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +R        G+      D   Y  ++ I RPFL   RE I  +  Q  + + +DP
Sbjct: 134 ETVILRLLSGAGVDGLAAMQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            N D+ ++RV  R  +    L + + KM++       +    + ++ + L    +   + 
Sbjct: 191 MNYDNHYDRVWCREALWP-FLTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSA 249

Query: 253 SQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307
               L   S L F   R  +SA + G     P +  +ER+   ++  KS  +  +   + 
Sbjct: 250 DYLDLTKLSELSFARQRQLLSAWMKGQGQYRPAFEMVERLRAEVIESKSDAQAALHWNQF 309

Query: 308 VIDRRANFLW 317
              R  N L+
Sbjct: 310 YYVRYQNILY 319


>gi|78223098|ref|YP_384845.1| tRNA(Ile)-lysidine synthetase-like [Geobacter metallireducens
           GS-15]
 gi|78194353|gb|ABB32120.1| tRNA(Ile)-lysidine synthetase-like protein [Geobacter
           metallireducens GS-15]
          Length = 468

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 117/314 (37%), Gaps = 26/314 (8%)

Query: 2   FLSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
             S    V  F    SL  P   ++VAVSGG+DS+ LL  L S+   R    +      +
Sbjct: 1   MRSVHAKVLAFSTEHSLFTPGDTVVVAVSGGADSVALLDILISLSDLR----LNLVVAHL 56

Query: 59  DHCLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEH 113
           +H LR   +  + R+V+D+ +   +  +     V   + + +  L  A R ARY      
Sbjct: 57  NHSLRGAESDGDERFVADLAASRGLPFAGEKADVRALSIRERLSLEDAGRRARYEFFDRV 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A    A  +  AH  DDQ ET+ +R  R     G+             +    RP L   
Sbjct: 117 ATQYGARSVALAHHADDQAETLLLRLLRGAGVTGLSAM------APRRDGRFVRPLLTLS 170

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDL 226
           R +I  +L  R + +  D SN D  F R R+R  +              L +        
Sbjct: 171 RSEIEGYLHGRGLRFRIDSSNADTAFLRNRIRHELIPHLVRFNPEISRRLAVTADLLAVD 230

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
              +       + +    H    + +    +L     + + + R + A+  G +    Y+
Sbjct: 231 EEVLETVADEALKRTAREHSGEGVILDVAGLLREPRGVRYRIYRRAVALAMGTLRGLSYK 290

Query: 286 SMERVMLFLKSGKR 299
            + ++   ++S K 
Sbjct: 291 HVLQIDGLVRSPKP 304


>gi|312874299|ref|ZP_07734331.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d]
 gi|311090172|gb|EFQ48584.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LEAF 2052A-d]
          Length = 430

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 9/255 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E + ++  
Sbjct: 15  LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKY 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 72  CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 189

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252
           +   R R+R FV      D   L     +F      + +   +L  K      +  I+ +
Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 249

Query: 253 SQDILNIDSTLLFYL 267
           +   L+  +     L
Sbjct: 250 NAADLSDFNCQQLSL 264


>gi|332365105|gb|EGJ42870.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK355]
          Length = 425

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 132/348 (37%), Gaps = 30/348 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQEKKYF----QGHRKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+           AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGKFS----ETAARQFRYDFFGKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPE-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPNLEKENPQFKDSLRYLGKEIEDWQAAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     I   Q        +  +LL+       G       +  E V+  L++     
Sbjct: 222 SYLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279

Query: 302 VSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345
            ++     +V D +   +  I+R        IL   E  +  G Y+F 
Sbjct: 280 HTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327


>gi|329920372|ref|ZP_08277104.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G]
 gi|328936048|gb|EGG32501.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 1401G]
          Length = 430

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 107/255 (41%), Gaps = 9/255 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  
Sbjct: 15  LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 72  CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R + +  D +N +
Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWINNSLLVRPLLSFSKEELLVYAKKRKLVYIVDYTNQE 189

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252
           +   R R+R FV      D   L     +F      + +   +L  K      +  II +
Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIIQV 249

Query: 253 SQDILNIDSTLLFYL 267
           +   L+  +     L
Sbjct: 250 NAADLSDFNCHQLSL 264


>gi|172061025|ref|YP_001808677.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6]
 gi|171993542|gb|ACB64461.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria MC40-6]
          Length = 468

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 143/403 (35%), Gaps = 31/403 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALADLPADARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   V +      RL +          +    G+ A+ARE RYA +    +      +  
Sbjct: 69  ADAWVAHAQATAERLGVTFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVAALWV 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RPFLR  R  +  +  QR
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPFLRLLRAQLERYAAQR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
            ++W +D SN D R+ R  +R  V    L AL +    F+D   +     A    L+   
Sbjct: 188 ELAWIDDESNADTRYARNALRIDV----LPALAMHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294
             +            L+ ++ + F       LLR      G    S     +M R +   
Sbjct: 244 AELDFAGAARDDGRALSREALVAFDDTRGANLLRFWMRRLGLPGASAGRLANMMRQLRDA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++        P    T +  PE +  WDG+  +      
Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSADPADDGTGMPRPEASLAWDGQEVWHVPAWR 363

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
            + +        +A     +P  + + A   + ++ GG+ L  
Sbjct: 364 GTFVF----GPAEAGSDGAVPEALLRGATLVVRARAGGERLRT 402


>gi|328478101|gb|EGF47969.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus MTCC
           5462]
          Length = 402

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 85/324 (26%), Positives = 133/324 (41%), Gaps = 30/324 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DSM LL              +     + DH LR  ++ E  +V    
Sbjct: 13  PHTRVLVAVSGGVDSMVLLDLAVRA------PNLDVVVATFDHRLRPESRQEQAFVVAAA 66

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +R  +     +W+ S       AAAR+ARY  ++  A +  AT+IMTAH  DDQLET+  
Sbjct: 67  ARYHVPVVTGTWQRSAATAVNEAAARQARYDFLNASADSQAATVIMTAHHADDQLETILF 126

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R        L G+     +     + RP L   ++DIR++  +  + +C+DPSN D 
Sbjct: 127 RLGRSGDP--AALVGIRPDQPWRKK-RLVRPLLNFSKDDIRAYAGRHGLDFCDDPSNADT 183

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250
           R+ R ++R  V           ++  Q    + +  VA+   +   +  R  I       
Sbjct: 184 RYARNQLRHQVIPAFKKQNPELLRHVQRFTTEQSGLVALAQMQLSELQQRLRINSVTIDW 243

Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVV 308
            A +     I   LL  LLR         + +P       ++  LK  +     +G  V 
Sbjct: 244 RAAANQPRTIQLMLLATLLRQWQPRVNHGLLMP-------ILKSLKDTRERRFDLGAGVT 296

Query: 309 IDRRANFLWITRAVRNLPTLILYP 332
           I  +A  +     V+ +P   L P
Sbjct: 297 IAVQAAKI-----VKLVPKPKLAP 315


>gi|220934352|ref|YP_002513251.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995662|gb|ACL72264.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 419

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 119/343 (34%), Gaps = 22/343 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +R  +R L   + ++VA SGG DS  LL A  ++   R  G  +  AI V H L   A
Sbjct: 6   DVLRDALRHLPPASRLIVAFSGGLDSHVLLHAAAAL---RGVGFPELRAIHVHHGLNPRA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              V +   VC  L +   V+    S P  G    A   R    +  A  +    ++TAH
Sbjct: 63  DAWVEHCGQVCEDLGVELRVIHVDAS-PADGESPEAAARRVRYAALEAALLPGDGLLTAH 121

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
              DQ ET+ ++  R     G+        +      W  RP L   RE +        +
Sbjct: 122 HQRDQAETLLLQLLRGSGPAGLAAMPRWQPL---GAGWHGRPLLEVSREVLEGHARDHGL 178

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           +W ED SN D RF+R  +R  +  +         +           ++ +L         
Sbjct: 179 AWIEDDSNRDTRFDRNLLRERIMPLLRERWPSLDQTLARAAGHQAESLGLLGDLARQDLE 238

Query: 247 RSIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM---LFLKSGK 298
                 S       +  +       +LR      G  + +P    ++ V+   L      
Sbjct: 239 ALRGDFSGTLSVAALKTLRPARQRNVLRFWLMEKG--LPMPSQARLQSVLDDVLAAGPDT 296

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR 341
              V+     I R  + L        +P     P +   WDGR
Sbjct: 297 TPLVAWPGGEIRRYRDAL-----HAMVPLGDHDPGQCFKWDGR 334


>gi|189485208|ref|YP_001956149.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287167|dbj|BAG13688.1| tRNA(Ile)-lysidine synthase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 321

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 18/267 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I+++VSGG DSM +L     +        I F A++ +H LR+ +  E   V ++
Sbjct: 18  IPGDKIILSVSGGMDSMCMLHLFWRLAKKM---DIVFLAVNFNHNLRKESVKEAETVKNL 74

Query: 77  CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +   I   +    V   + K    +  A R  RY  +   +K      I TAH  +D  
Sbjct: 75  SAEFGIDCLLEEIGVKEYSKKYSLSVETAGRNLRYLTLERISKKYKCNKIATAHNANDNA 134

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV MR  R         +G+      + N+ + RP L  +R+ I  ++    + +C D 
Sbjct: 135 ETVLMRLLRGSGN----FAGIPQKRKINRNIVVIRPLLPVKRKFIEEYVRNHKLPFCTDK 190

Query: 193 SNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           SN  D + R ++R         +  + +  ++            +    A  + K +   
Sbjct: 191 SNFSDIYTRNKIRLSLMPVFEKINPMAVEHIFALSCIQSRENAYLEEVSAKFLKKCVKKQ 250

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSA 272
              I+   +  L  + T+ F +L+   
Sbjct: 251 KNQILLDLKTFLRYNKTIQFRILKNLL 277


>gi|169634324|ref|YP_001708060.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii SDF]
 gi|260556042|ref|ZP_05828261.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606]
 gi|169153116|emb|CAP02190.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii]
 gi|260410097|gb|EEX03396.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii ATCC 19606]
          Length = 467

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 129/310 (41%), Gaps = 19/310 (6%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +     +  L+  SGG DSM LL  +  +   +        AI +DH L++ + +    
Sbjct: 24  AQEFSEKSSFLIGCSGGMDSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEV 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V+   + L I + +   + +     L A AR+ARY    +H +     +++ AH   DQ 
Sbjct: 78  VATQATILNIPYIIQKVQIAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +R        G+      D   Y  ++ I RPFL   RE I  +  Q  + + +DP
Sbjct: 134 ETVILRLLSGAGVDGLAAMQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            N D+ ++RV  R  +    L + + KM++       +    + ++ + L    +   + 
Sbjct: 191 MNYDNHYDRVWCREALWP-FLTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSA 249

Query: 253 SQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRV 307
               L   S L F   R  +SA + G     P +  +ER+   ++  KS  +  +   + 
Sbjct: 250 DYLDLTKLSELSFARQRQLLSAWMKGQGQYRPAFEMVERLRAEVIESKSDAQAALHWNQF 309

Query: 308 VIDRRANFLW 317
              R  N L+
Sbjct: 310 YYVRYQNILY 319


>gi|291535600|emb|CBL08712.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Roseburia intestinalis
           M50/1]
          Length = 501

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 118/341 (34%), Gaps = 23/341 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           + +     ++V +SGG+DS+     L  +L  R        AI V+H +R E ++ +  +
Sbjct: 13  KLMTEGDTVIVGLSGGADSVA---LLLVLLELRQRIGYTLLAIHVEHGIRGEESRKDAAF 69

Query: 73  VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI-----NATLIM 123
           V ++C +  I   +              G+  AAR  RY    + A+ +         I 
Sbjct: 70  VEELCRQKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIA 129

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  +D  ETV  +  R     GM   GM    +   ++ I RP L   R  I  +L +
Sbjct: 130 LAHHANDNAETVLFQMARGSGVHGM--CGMHPKRVLGDDILIVRPLLCVSRGQIEEYLKK 187

Query: 184 RNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
               +  D +N D  + R R+R         + +  +  +       Q     +      
Sbjct: 188 CGQEYRTDGTNLDINYSRNRIRHHILPELSVINEQAVSHINQSALLLQQAVSYMEQETKK 247

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
            +         + + +  +       +   ++        G     G   ++ V   ++ 
Sbjct: 248 AVQTCCIGGGGAYVILENEWKQYPEIIRQEIVHEVLGKTAGSRKDLGMVHVQDVCALMEK 307

Query: 297 GKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
                +++  ++   R    + + R+  +      + E+  
Sbjct: 308 QTGREITLPYQMTASRIYEGVRLCRSGTHKAGTGTWQEKGG 348


>gi|21232029|ref|NP_637946.1| cell cycle protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66767844|ref|YP_242606.1| cell cycle protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|61217383|sp|Q8P7L3|TILS_XANCP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|81306178|sp|Q4UWI7|TILS_XANC8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21113767|gb|AAM41870.1| cell cycle protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573176|gb|AAY48586.1| cell cycle protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 435

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/353 (23%), Positives = 127/353 (35%), Gaps = 17/353 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            PA +LVA SGG DS  LL AL +    R  G     A+ V H L   A     +    C
Sbjct: 14  PPAPVLVAYSGGMDSAVLLHALAATDGYREAG---LRAVHVHHGLHADADAWALHCQQQC 70

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L IA  VV  + ++     + AA  A                +  AH  DDQ ET  +
Sbjct: 71  ADLGIALQVVRVQVARDSGSGLEAAARAARHAAFAATLAAG-EWLALAHHRDDQAETFLL 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ R     G  L+ M     +     + RP L   R D+ ++     + W +DPSNTD 
Sbjct: 130 RALRASGPDG--LAAMRPQRPFGPG-TLWRPLLGHARADLAAYAQAHAVRWIDDPSNTDP 186

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM---RSIIAISQ 254
           + ER  +R  V         L             +A  +L    + +      S  A+  
Sbjct: 187 QHERNFLRTQVLPALQQRWPLAADALARSAQLCGDASTLLHDDDVNLLPTVCNSAGALEL 246

Query: 255 DILNIDSTLLF-YLLRVSA-AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
             L   S      LLR    A     +   G  ++ER +   +  ++ C +  +  I R 
Sbjct: 247 QPLRSHSPARRARLLRAWVAAAHAPPLPAQGVHALEREIATTQPDRQTCFAWQQTEIRRW 306

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              L++  A    P      +    W+G         + +Q+      + + P
Sbjct: 307 RQQLYLLSARATWPA-----QWQAEWNGDSTLLLPDGAQLQLRGTPGLRFEQP 354


>gi|240144373|ref|ZP_04742974.1| tRNA(Ile)-lysidine synthase [Roseburia intestinalis L1-82]
 gi|257203624|gb|EEV01909.1| tRNA(Ile)-lysidine synthase [Roseburia intestinalis L1-82]
          Length = 501

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 117/341 (34%), Gaps = 23/341 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           + +     ++V +SGG+DS+     L  +L  R        AI V+H +R E ++ +  +
Sbjct: 13  KLMTEGDTVIVGLSGGADSVA---LLLVLLELRQRIGYTLLAIHVEHGIRGEESRKDAAF 69

Query: 73  VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI-----NATLIM 123
           V ++C +  I   +              G+  AAR  RY    + A+ +         I 
Sbjct: 70  VEELCRQKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIA 129

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  +D  ETV  +  R     GM   GM    +   ++ I RP L   R  I  +L +
Sbjct: 130 LAHHANDNAETVLFQMARGSGVHGM--CGMHPKRVLGDDILIVRPLLCVSRGQIEEYLKK 187

Query: 184 RNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
               +  D +N D  + R R+R         + +  +  +       Q     +      
Sbjct: 188 CGQEYRTDGTNLDINYSRNRIRHHILPELSVINEQAVSHINQSALLLQQAVSYMEQETKK 247

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
            +         + + +  +       +   ++        G     G   ++ V   ++ 
Sbjct: 248 AVQTCCIGGGGAYVILENEWKQYPEIIRQEIVHEVLGKTAGSRKDLGMVHVQDVCALMEK 307

Query: 297 GKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
                +++  ++   R    + + R   +      + E+  
Sbjct: 308 QTGREITLPYQMTASRIYEGVRLCRRGTHKAGTGTWQEKGG 348


>gi|302332222|gb|ADL22415.1| tRNA(Ile)-lysidine synthetase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 431

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I + +    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQESVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|225024422|ref|ZP_03713614.1| hypothetical protein EIKCOROL_01297 [Eikenella corrodens ATCC
           23834]
 gi|224942803|gb|EEG24012.1| hypothetical protein EIKCOROL_01297 [Eikenella corrodens ATCC
           23834]
          Length = 407

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 136/354 (38%), Gaps = 17/354 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS+ LL  L S+   R+   ++ SA+ V H L   A     +  ++C++ ++ 
Sbjct: 3   VGFSGGLDSVVLLHLLCSL---RNELPLELSAVHVHHGLDAPADQWAEFCHELCAQWQVP 59

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +   +    + GL AAAR  RY   +      +A  +  AH  DDQ ET+ + + R  
Sbjct: 60  LRIERVQVEFGRLGLEAAARAKRYRCFA----QSHADAVALAHHADDQAETLLLAALRGG 115

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +   LS M      +  + + RP L   R ++ ++  +  ++W ED SN D    R  
Sbjct: 116 GLR--ALSAMPALRALNERISLWRPLLAVSRTELLAYAQEHKLTWVEDSSNADTTLLRNW 173

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP----KYLTVHMRSIIAISQDILNI 259
           +RR         +    ++      ++ + +A+L      ++ +++  +          +
Sbjct: 174 LRREALPPWQERVPHLTRQLLATVGRLQHDLALLEDYGQAEHNSLYDAAGRFQVASWRQL 233

Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRANFLW 317
                 + L + A     ++  P   S+ +    L +   ++    +        A  L+
Sbjct: 234 PPLRQTHQLHLFA--RNHRLGSPRADSVRQFAATLANPAVRQAQWPLPHSRAILYAGCLF 291

Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371
              A      L++ P       G  +     +S I   PQ      +P G   I
Sbjct: 292 PIPAEWIPGKLLVQPVWQPAAHGLPENLIQPNSGIWRTPQPGDTLPLPHGRKKI 345


>gi|323350840|ref|ZP_08086499.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66]
 gi|322123014|gb|EFX94717.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis VMC66]
 gi|325686488|gb|EGD28517.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK72]
          Length = 425

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 116/298 (38%), Gaps = 26/298 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKLQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLVDSQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +        AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I + ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQYFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
             +     I   Q        +  +LL+       G       +  E V+  L++   
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKAN 277


>gi|294625512|ref|ZP_06704140.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600181|gb|EFF44290.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 468

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 129/353 (36%), Gaps = 17/353 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    C
Sbjct: 47  PPGPVLLAYSGGMDSSVLLHLLAAASRYRHAG---LRALHVHHGLHADADAWAAHCQRTC 103

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L++   +V  + ++  +GL   A        +     I    +  AH  DDQ ET  +
Sbjct: 104 DALQVPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLL 162

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ R    +G  L+ M     +   + + RP L   R D+ ++     + W +DPSN D 
Sbjct: 163 RALRASGPEG--LAAMRPQRPFASGM-LWRPMLAHARADLLAYAHAHGLRWIDDPSNADP 219

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQ 254
             +R  +R  +  +                    +A A+L+ + + +      +  A+  
Sbjct: 220 HHDRNFLRSQIVPLLQQRWPQATDALARSAQLSADASALLLQQDMALLPGVNTASGALDL 279

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312
             L          L  +         LP +   ++E+ +    + +  C +  +V + R 
Sbjct: 280 QALRAQPVERRARLLRAWVSAAHAPPLPAHGVAALEQEIDKHAADRHACFAWQQVEVRRW 339

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              L++ RA    P+     +    WDG    Q    + +++      +   P
Sbjct: 340 RQCLFLHRAAAAWPS-----DWHAQWDGAAPLQLPDGAQLRLLGAPGLRFAQP 387


>gi|282856665|ref|ZP_06265933.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455]
 gi|282585514|gb|EFB90814.1| tRNA(Ile)-lysidine synthase [Pyramidobacter piscolens W5455]
          Length = 434

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 140/377 (37%), Gaps = 31/377 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R  +    +L+ VSGGSDSM LL A   +     +   +   + +DH LR  +  +  +V
Sbjct: 17  RGWLGQTPVLLGVSGGSDSMSLLCAFSRL-----YEPSQLVVLHMDHGLRGASSRDGEFV 71

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
              C+ L +   +     S   +      AA R  RY L  E A+     L+   HT DD
Sbjct: 72  KKRCAELGVRCVIERRPVSALSRKGESEEAAGRRLRYELYEETAQRFGCRLVALGHTRDD 131

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             E   M   R       G++GM +           RP L  RR+++R FL  +  SW +
Sbjct: 132 LAENTLMNLARGCGL--WGVAGMPE-----QRDIYIRPLLSFRRQELRDFLRAQGWSWVD 184

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHAL-------YLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           D +N  + ++R RVR  V  +    +          + +   L  K+    +  + + ++
Sbjct: 185 DETNALNIYQRNRVRNEVMPLLAREVNSGVVEHLASLAEEAQLWRKMQEEQSSALCREVS 244

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP--GYRSMERVMLFLKSGKRGC 301
           +  R    +S   L          L       G ++ LP      +E +   ++   R  
Sbjct: 245 LPQRGWPCLSLSKLRRVHEFQRRELVRF---VGRRLELPALSRVRIEELDRLMRRSGRFV 301

Query: 302 VSIGRVV-IDRRANFLWITRAV-RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSY 359
              G  V ++     L    A  + L  L L   ET  W G        D+  + G    
Sbjct: 302 FQWGSAVDVEAGGGMLCWHPAAEKRLEALELSLGETARWGGWRVSLRRKDASAEAG--FG 359

Query: 360 RKADVPSGIPPIIAQRA 376
            +  +    P ++ + +
Sbjct: 360 LRCPLDGARPVVLQKNS 376


>gi|299134181|ref|ZP_07027374.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2]
 gi|298590928|gb|EFI51130.1| tRNA(Ile)-lysidine synthetase [Afipia sp. 1NLS2]
          Length = 347

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 92/330 (27%), Positives = 148/330 (44%), Gaps = 19/330 (5%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+   F      PA +++AVSGG DS+ LL            G     A++VDH L
Sbjct: 11  ISAQEARHLFAGWKRIPA-LVLAVSGGPDSVALLWLAARWRKSLKNGP-DLLAVTVDHGL 68

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V  + S L I H ++SW+  KP+TG+  AAR+ARY L++  A++ +A  I
Sbjct: 69  RAAAAHEARNVKRLASSLGITHRILSWRGPKPKTGVPRAARDARYELLARAARSASAVAI 128

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAHT DDQ ETV MR  R     G+    M         + + RPFL   +  + + L 
Sbjct: 129 VTAHTQDDQAETVLMRLSRGSGITGLAGMAMQ---TERHGVGLLRPFLEIPKARLVATLD 185

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----- 237
           +  + + +DP+N D  + R R+R  +  +         + F  L ++++ A A L     
Sbjct: 186 RAKVVYADDPTNHDPAYTRSRLRALMPVLASEG--ADARTFSRLAMRLSRADAALERMTD 243

Query: 238 -IPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
              +YL +           + + +   +   LLR + A  G     P    +E ++  L 
Sbjct: 244 GAERYLRLRGGGGGGFDISLFSTMAEEIQVRLLRRALA-GGMTAHSPELGQIETLLRALA 302

Query: 296 ----SGKRGCVSIGRVVIDRRANFLWITRA 321
                G+R   S+  + +      L +  A
Sbjct: 303 QARSEGRRFKQSLAGMTVSVEKERLVVRPA 332


>gi|116333183|ref|YP_794710.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus brevis ATCC 367]
 gi|116098530|gb|ABJ63679.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus brevis ATCC 367]
          Length = 450

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 12/286 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVAVS G DSM LL  L ++         K + + V+H LR+ ++ E  ++   C+  +I
Sbjct: 24  LVAVSTGVDSMVLLQLLMTLPVTMR---PKLTVVHVNHQLRQQSQTEAAFLKKWCAAHQI 80

Query: 83  AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +     W  +  P  G+ AAAR  RY   ++      A  + TAH  D+Q+ET+ ++  R
Sbjct: 81  SLVTTKWPIDQHPSHGVEAAARAFRYDFFAQQLHQQKADWVATAHQADEQVETILLKLIR 140

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                   L+GM  +        + RP L   +E ++++  ++ + W ED +N +    R
Sbjct: 141 GGQL--AQLTGMAASRPLA-GGRVIRPLLPFTKERLKAYAREQQVPWYEDATNQELIASR 197

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS---QDILN 258
            RVR  +  +        ++       ++   + M+  + L   +++I+  S     +L 
Sbjct: 198 NRVRHQLIPLLKQENPQVVEHVMTYAQQLQATL-MISDQALDQQLQTIMTRSDNVAGLLR 256

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                   LL          IS  GY  + + +  L +G+    S+
Sbjct: 257 HSIAEQRLLLTRLIKQQAPTISA-GYPQIYQCLQLLANGQHPTGSV 301


>gi|304440185|ref|ZP_07400075.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371234|gb|EFM24850.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 434

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 26/328 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           MF   +E+++    +L+     ILV +SGG+DS+ LL AL  +  D +      S   ++
Sbjct: 1   MFKKFLETIKS--ENLIKKGDRILVGLSGGADSVYLLRALLYIKDDYNLY---ISCAHIN 55

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
           H +RETA  +  +V ++C +  +   +         +K +     A R+ARY        
Sbjct: 56  HGIRETALRDEDFVKNLCDKFDVPLYINHINMNELAAKYKITSEEAGRKARYDFFDSI-- 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             N   I  AH  DD  ETV  R  R    +G+       T +      I RP L   R 
Sbjct: 114 -ENIDKIALAHNLDDNAETVLFRIIRGTGLQGL-------TGIPISRDKIIRPILNTNRL 165

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAV 234
            I + L      +  D +N  + + R ++R  +  +       K K     LR    +++
Sbjct: 166 TIENELKSMGQEYMIDETNLSNDYTRNKIRNLLIPLIESEFNSKFKDALIRLRNNSLDSI 225

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--ML 292
            ++    L   +   +++ + +L +     + + R         + L      E +  ++
Sbjct: 226 EIIDNIELNFKIEKSLSVDK-LLELSRPERYLIYRKYLEKYYSNVDL-SLVHFEAIDSLI 283

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITR 320
           +LK+     ++   +   R  + L I +
Sbjct: 284 YLKNNSGVDLA-SNLRFVRYNDELSILK 310


>gi|262341192|ref|YP_003284047.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272529|gb|ACY40437.1| PP-loop family protein [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 456

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 137/346 (39%), Gaps = 42/346 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             IE +R +         I VAVSGG DSM L+  L  +        I+      +  LR
Sbjct: 5   DHIEKIRKYFS---LKNKICVAVSGGLDSMVLVNLLLDL------SNIELEVAHCNFTLR 55

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTIN 118
            + + ++  ++ + C++  I   V  +       K +  +  AAR+ RY    E  K I+
Sbjct: 56  NQESDEDEVFIKNFCTKKNIICHVKRFDTLNFSKKNKLSIQMAARKLRYDWFFELLKKID 115

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I+  H  +D +ET ++   R    KG+         +   N    RP     +E+I 
Sbjct: 116 YDYIVLGHHLNDSIETFFLNILRGTGIKGL-------LGIPKKNGKFIRPLSDFTKEEIL 168

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +   +NI W  D SN + ++ R ++R F+     +      K F+     + +   ++ 
Sbjct: 169 HYAKIKNIKWRLDSSNLETKYLRNKIR-FILSKFSYFSSFFCKGFKKTINHLYDENFLIE 227

Query: 239 PKYLTVHMRS---------IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
            K   V+            I  I  + +     L FYL ++         S  G+ +++ 
Sbjct: 228 EKIKKVYHEITVDKKNHPFIWKIKCNKIEKLQPLSFYLFKLF--------SPYGFYNVKS 279

Query: 290 V--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
           +  +++ +SGK+      R +I  R +++ + R   +       P+
Sbjct: 280 LKNLIYAQSGKQLISKKYR-IIKNRNDWILVYRKFLSENKTYAIPD 324


>gi|324989589|gb|EGC21535.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK353]
          Length = 425

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 116/298 (38%), Gaps = 26/298 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKLQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLVDSQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +        AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I + ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQYFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
             +     I   Q        +  +LL+       G       +  E V+  L++   
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKAN 277


>gi|289809587|ref|ZP_06540216.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 223

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/217 (26%), Positives = 85/217 (39%), Gaps = 11/217 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +R     G+   G            + RP LR  R+ +  + ++  + W ED SN DD +
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +R  +R       L  L  +   F     +     A 
Sbjct: 187 DRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAE 219


>gi|195977168|ref|YP_002122412.1| tRNA(Ile)-lysidine synthase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867630|ref|YP_002743578.1| PP-loop family protein [Streptococcus equi subsp. zooepidemicus]
 gi|226695546|sp|B4U5H9|TILS_STREM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|259533766|sp|C0MC74|TILS_STRS7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|195973873|gb|ACG61399.1| tRNA(Ile)-lysidine synthase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700906|emb|CAW97574.1| PP-loop family protein [Streptococcus equi subsp. zooepidemicus]
          Length = 427

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 117/292 (40%), Gaps = 21/292 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  LH+  ++    +I+     V+H  R  + DE  Y+     +  
Sbjct: 22  VLIAVSGGVDSMNLLHFLHAFQAEL---QIRIGIAHVNHKQRPESDDEEAYLRSWAKKHA 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V  ++ +        AAR  RY    E  +  + + ++TAH  DDQ ET+ MR  R
Sbjct: 79  IPIYVAYFQGAFS----ENAARHFRYQFFEEIMQQEHYSALVTAHHADDQAETILMRLIR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   L+G+ +   +     + RPFL   +E++       N    ED SN    + R
Sbjct: 135 GSRLR--HLAGIREVQPFATG-QLIRPFLTVSKEELP------NPFHFEDHSNDSMAYFR 185

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
            RVR       L     +  +     + ++    +L+  +  +            L   +
Sbjct: 186 NRVRHH----YLPDFKRENPQATQSLIALSAESRLLLQAFDDLTKGLAFHRLDCFLAQSA 241

Query: 262 TLLFYLLRVSAAICGG-QISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
            + F+LL+          I    +  +  ++   K G     +   ++I++ 
Sbjct: 242 AVQFFLLQHYLETFPQLAIKKSQFDDLLHIIRRQKQGIYPIKNTYCLLIEKE 293


>gi|23097532|ref|NP_690998.1| cell-cycle protein [Oceanobacillus iheyensis HTE831]
 gi|61216653|sp|Q8EU18|TILS_OCEIH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|22775755|dbj|BAC12033.1| cell-cycle protein [Oceanobacillus iheyensis HTE831]
          Length = 466

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/248 (22%), Positives = 107/248 (43%), Gaps = 17/248 (6%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +S+  F++    L   A I+V VSGGSDSM LL  L ++        I+  A++++H LR
Sbjct: 3   QSILSFIQKHQLLKEGAKIIVGVSGGSDSMALLHFLKNLQEQWE---IEVIALTINHQLR 59

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTIN 118
            E +  + ++V   C    I          + Q         AAR  RY +     +   
Sbjct: 60  GEDSTADQKFVEQWCFHSDIRCIAHQVDVGEYQRQYRVSEELAARRLRYEIYEAEMRKQG 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  +   H  DDQ+ET++MR  R          G+     +     + RPFL   ++ I 
Sbjct: 120 ADYLALGHHGDDQVETLFMRLTRVATSN--AFEGIPVKRSFASG-QLIRPFLCVNKQLIL 176

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVA 235
           +++ +  + + ED +N D+++ R   R  +  +   +   L++  ++  +   +  N +A
Sbjct: 177 NYVKENEVPFREDQTNKDNKYTRNYYRNEIIPLLTKNNERLFITAQRLSETLREDENYLA 236

Query: 236 MLIPKYLT 243
               + + 
Sbjct: 237 KEANRMVE 244


>gi|309804613|ref|ZP_07698678.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c]
 gi|308166005|gb|EFO68223.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 09V1-c]
          Length = 430

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 9/255 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E + ++  
Sbjct: 15  LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKY 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 72  CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252
           +   R R+R FV      D   L     +F      + +   +L  K      +  II +
Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIIQV 249

Query: 253 SQDILNIDSTLLFYL 267
           +   L+  +     L
Sbjct: 250 NAADLSDFNCHQLSL 264


>gi|332364175|gb|EGJ41952.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK49]
          Length = 425

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 134/349 (38%), Gaps = 32/349 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLIDYQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +        AAR+ RY       +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGNVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQYFACG-ELIRPLLTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +  L    
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDLQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300
             +     I   Q        +  +LL+          SL    +  E V+  L++    
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQ---NYLEKFPSLNLSKQQFEEVLNILRTKANY 278

Query: 301 CVSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345
             ++     +V D +   +  I+R        IL   E  +  G Y+F 
Sbjct: 279 RHTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327


>gi|239637495|ref|ZP_04678469.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603]
 gi|239596940|gb|EEQ79463.1| tRNA(Ile)-lysidine synthase [Staphylococcus warneri L37603]
          Length = 432

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/241 (23%), Positives = 111/241 (46%), Gaps = 12/241 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            HI++AVS G DSM LL  L   L++      K + I ++H LR+ + +E  +    C  
Sbjct: 12  DHIVLAVSTGIDSMCLLHLL---LNEYQHTYSKLTCIHINHGLRQASIEEEAFFKTYCEE 68

Query: 80  LRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             I + +     S+       +   +R+ RY       K + A++++TAH  DDQ+ET++
Sbjct: 69  HGIEYYIKRLDLSETVEAGNSIQNISRQYRYEWFDYIMKQLGASVLLTAHHRDDQIETIF 128

Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R       +  +G++     + Y     + RP L   +  I+S+  Q N+ + ED SN 
Sbjct: 129 YRLFTGRFTRSHLGIAYTSQRVSY----QLVRPMLDISKATIKSYQNQYNVPFFEDVSNH 184

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           ++ + R  +R  +    +    L +     L+   +  +A L  K     ++ ++ +S++
Sbjct: 185 NNVYVRNDIRNRIIPAVMDNQQLDVAHLLKLKSWHDQELATL-RKSAHHFIKEVVRVSEN 243

Query: 256 I 256
           +
Sbjct: 244 L 244


>gi|229542263|ref|ZP_04431323.1| tRNA(Ile)-lysidine synthetase [Bacillus coagulans 36D1]
 gi|229326683|gb|EEN92358.1| tRNA(Ile)-lysidine synthetase [Bacillus coagulans 36D1]
          Length = 478

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/261 (26%), Positives = 107/261 (40%), Gaps = 21/261 (8%)

Query: 2   FLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
            L+  ++V  F+R    +    H+LVAVSGG DS+ LL  L    S R   ++K +A  V
Sbjct: 1   MLAFEDNVFHFIRKHRLIEAGDHLLVAVSGGPDSLALLHFLT---SRRERFRVKITAAHV 57

Query: 59  DHCLRETAK-DEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEH 113
           +H LR  A   ++ +V   C   RI        V  K  +   G+  AAR+ RYA ++E 
Sbjct: 58  NHMLRGEASCKDLLFVKSFCESHRIGCEAAEIPVLEKAKEEGLGIEEAARKYRYAFLAEA 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +   A  ++  H  DDQ+ETV MR  R    KG                 I RP L   
Sbjct: 118 MEKTGANKVVLGHHGDDQMETVLMRLTRGAGGKGRAGIPFRRPFAKG---EIIRPLLGTA 174

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           +++I  +    ++    D SN    F R R R  V       L    K+     +     
Sbjct: 175 KKEIIDYCAHYHLEPRTDESNASPDFARNRFRASV-------LPFLKKENPRAHLHFQRF 227

Query: 234 VAMLIPKYLTVHMRSIIAISQ 254
              L+   + ++  +   + Q
Sbjct: 228 SEELLEDEIYLYGLAQEKLKQ 248


>gi|188990960|ref|YP_001902970.1| Putative cell cycle protein mesJ homolog. [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732720|emb|CAP50914.1| Putative cell cycle protein mesJ homolog [Xanthomonas campestris
           pv. campestris]
          Length = 432

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/353 (22%), Positives = 126/353 (35%), Gaps = 17/353 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            PA +LVA SGG DS  LL AL +    R  G     A+ V H L   A     +    C
Sbjct: 11  PPAPVLVAYSGGMDSAVLLHALAATDGYREAG---LRAVHVHHGLHADADAWALHCQQQC 67

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L IA  VV  + ++     + AA  A                +  AH  DDQ ET  +
Sbjct: 68  AALGIALQVVRVQVARDSGSGLEAAARAARHAAFAATLAAG-EWLALAHHRDDQAETFLL 126

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ R     G  L+ M     +     + RP L   R D+ ++     + W +DPSNTD 
Sbjct: 127 RALRASGPDG--LAAMRPQRPFGPG-TLWRPLLGHARADLAAYAQAHAVRWIDDPSNTDP 183

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM---RSIIAISQ 254
           + +R  +R  V         L             +A  +L    + +      S  A+  
Sbjct: 184 QHDRNFLRTQVLPALQQRWPLAADALARSAQLCGDASTLLHDDDVNLLPTVCNSAGALEL 243

Query: 255 DILNID-STLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
             L          LLR    A     +   G  ++ER +   +  ++ C +  +  I R 
Sbjct: 244 QPLRSHFPARRARLLRAWVAAAHAPPLPAQGVHALEREIATTQPDRQTCFAWQQTEIRRW 303

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              L++  A    P      +    W+G         + +Q+      + + P
Sbjct: 304 RQQLYLLSARATWPA-----QWQAEWNGDSTLLLPDGTQLQLRGTPGLRFEQP 351


>gi|291613873|ref|YP_003524030.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1]
 gi|291583985|gb|ADE11643.1| tRNA(Ile)-lysidine synthetase [Sideroxydans lithotrophicus ES-1]
          Length = 445

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 125/330 (37%), Gaps = 18/330 (5%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            F   L   +HILV +SGG DS   ++ LH +       + + SA+ V H +   A    
Sbjct: 16  HFAPLLPRHSHILVGLSGGMDS---VVLLHLLHILAPRFEWRLSALHVHHGISPNADAWA 72

Query: 71  RYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            + +D+C+R  I   +     +  + + G+ AAAR+ R+A  +          +  AH  
Sbjct: 73  NFCADLCARKGIPLHIERVDIAPLRDEHGIEAAARKLRHAAFA----RQPCDYVALAHHA 128

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET+ ++  R    KG+       +        I RP L   R+++  +  Q+ + W
Sbjct: 129 DDQAETLLLQLLRGAGVKGVAAMPAVKSATPHARA-ILRPLLDVSRDELSEYAQQQGLRW 187

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            ED SN DD + R  +R  +  +                     A  +L          S
Sbjct: 188 VEDESNADDAYPRNFLRHRLLPLLEQRFPAYRDTLIRSAQHFAEAGDLLDELARQDAQDS 247

Query: 249 IIAISQD---ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCV 302
           +     D   +  +  +    LLR    +      +P    ++ ++  L   +     CV
Sbjct: 248 LTDGPLDVSLLRALSHSRARNLLRYYLHM--RNTPMPQAVQLDEMLHQLCDARDDAAVCV 305

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYP 332
             G   + R  + + +  A+      ++ P
Sbjct: 306 EFGGWQLRRYRDKVHVFSALAAFDRNLVLP 335


>gi|257455699|ref|ZP_05620928.1| tRNA-Xxx [Enhydrobacter aerosaccus SK60]
 gi|257446982|gb|EEV21996.1| tRNA-Xxx [Enhydrobacter aerosaccus SK60]
          Length = 485

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 145/412 (35%), Gaps = 54/412 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I +A SGG DSM LL A   +        +    I ++H L++ + D  + V   C + 
Sbjct: 30  KIYIACSGGRDSMALLFACQQLQ-------LPIHVIHINHKLQKISDDWQQLVEGYCHKH 82

Query: 81  RIAHSVVSW-----------------KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            I +  V                   +    Q      AR ARY  I + A      ++ 
Sbjct: 83  HIDYDSVCIDWQSQQVYGADSTISQEQQVGTQQVNEQQARTARYHAIMQIAGEN--AIVA 140

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            AH  +DQ+ET+ +   +     G+ G++       +   +W+ RP L   R++I  F+ 
Sbjct: 141 LAHHANDQVETLLINVCQGTGLAGLTGMTAFGVQHEFGKPIWLWRPLLGVTRDEISDFVA 200

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            + I + +DP+N     +R  +R  +  +     +  ++     +  +  A  ++  +Y 
Sbjct: 201 AQPIPYVDDPTNFGVANQRAFLRNQILPLLDERFHKVVQNITRTQQNLTEAQRIVEEQYQ 260

Query: 243 TVHMRSIIA----ISQDILNIDSTLLFYLLRVSA----AICGGQISLPGYR---SMERVM 291
                   +      Q  L+I +       R        + G Q   P  +    +E+++
Sbjct: 261 QDLALCQWSNSWTSHQQCLHIPNLKALSQARRFNLLHHWVKGSQKFAPTRQWIVQIEQLL 320

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
              ++ ++  +    + I +  + L+  R   +    I         D R      +D  
Sbjct: 321 QSAQTDQQAILQWQGIEIRKYRDTLY--RLDADYVKAI-----HGKSDNRVLVNLTADLG 373

Query: 352 IQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
           + +G          + +P    Q    S             F +   +FD+P
Sbjct: 374 LSVGLSPELALASRAVLPNESFQLLSQSFHQS---------FKKLCQRFDIP 416


>gi|170701543|ref|ZP_02892493.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10]
 gi|170133537|gb|EDT01915.1| tRNA(Ile)-lysidine synthetase [Burkholderia ambifaria IOP40-10]
          Length = 468

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 144/403 (35%), Gaps = 31/403 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVALAYLPADARIAIAYSGGLDSTVLLDA-----TVRMAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   V +      RL +          +    G+ A+ARE RYA +    +      +  
Sbjct: 69  ADAWVAHAQATAERLGVTFESERVDVPRDSGLGIEASARERRYAALDAMCERHGVATLWV 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RPFLR  R  +  +  QR
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPFLRLLRAQLERYAAQR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
            ++W +D SN D R+ R  +R  V    L  L +    F+D   +     A    L+   
Sbjct: 188 ELAWIDDESNADTRYARNALRIDV----LPTLAMHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294
             +            L+ D+ + F       LLR      G    S     +M R +   
Sbjct: 244 AELDFAGAARDDGRALSRDALVAFDDTRGANLLRFWMRRLGLPSASAGRLANMMRQLRDA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++        P    T +  PE +  WDG+  +      
Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSAAPADDGTGMPRPEASLAWDGQEVWHVPAWR 363

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
            + +     +  +A     +P  + + A   + ++ GG+ L  
Sbjct: 364 GTFVF----APAEAGSDGAVPEALLRGATLVVRARAGGERLRT 402


>gi|295694779|ref|YP_003588017.1| tRNA(Ile)-lysidine synthetase [Bacillus tusciae DSM 2912]
 gi|295410381|gb|ADG04873.1| tRNA(Ile)-lysidine synthetase [Bacillus tusciae DSM 2912]
          Length = 497

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/321 (23%), Positives = 131/321 (40%), Gaps = 20/321 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L     +++AVSGG DSM  +  +  +     F         VDH +R  + DE R+V
Sbjct: 13  RELPPLHRVVLAVSGGVDSMVAMDLIGQLSGALGF---SVVVCHVDHRMRPESGDEQRFV 69

Query: 74  SDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                R  +A       V  +  K      AAAR  RY  +++ A+   A  ++ AH  D
Sbjct: 70  EAEAVRRGLAFQGVAVDVPGRIRKTGESPQAAARALRYEALTQCAREAGAEAVILAHHQD 129

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV +R  R  +  G+G  GM +   +  +LW  RPFL+  + ++ ++     I + 
Sbjct: 130 DQAETVLLRLLRGTSPAGLG--GMNEVRRWG-DLWWLRPFLKVPKAELVAYATDHGIPYR 186

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           EDPSN   ++ R ++R  +  +       ++K     L   +    A+L P  L    R 
Sbjct: 187 EDPSNWSTKYLRNKIRLQLIPLLEREYQPQIKNHLARLAQMIQEDEAVLTPMALEARDRC 246

Query: 249 IIAISQDIL-------NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           +   S +         ++ + L   +L +       ++   G   +E +      G+ G 
Sbjct: 247 VRGGSGNYRIDIPRFSDLPAALQRRVLTLILDYPSERLPGWGAIQVEALRNLALHGRSGS 306

Query: 302 --VSIGRVVIDRRANFLWITR 320
                G     R  + L + R
Sbjct: 307 ELRLSGGWRARRVYDELVLDR 327


>gi|323342361|ref|ZP_08082593.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463473|gb|EFY08667.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 400

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 120/287 (41%), Gaps = 29/287 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
               +V VSGG DSM LL  L           I   A  V++  RET+K +   V   C 
Sbjct: 3   HKKWIVGVSGGPDSMALLDILSK-------QNIPCVAAHVNYGKRETSKRDEDIVRKYCE 55

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  I     ++++          AR  RYA   E     +A  +  AH F+D LET   +
Sbjct: 56  KNHIPFECSNYEDDGKNHNFQHQARAFRYAFFKELVLKYDAEGVAIAHHFNDDLETYLFQ 115

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            QR    + +GL+   +     +++ + RP L   ++ +  +     I +  D SN    
Sbjct: 116 KQRKMESEHVGLAQYTEI----MDVTVWRPLLDMTKDMVVQYCDDHQIQYGIDESNLSLD 171

Query: 199 FERVRVRRFVRDIDLHALY------LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           + R ++R  +  +D ++        L  K++ + R K+  ++A+ +   + V M ++I  
Sbjct: 172 YTRNQIRNDIHYMDENSYESLVKEMLAAKQYGEKRSKMVKSIALQLDSKVKVDMYALIQ- 230

Query: 253 SQDILNIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKS 296
                     +   +LR+  A  G     +S P  + ++ ++L  K+
Sbjct: 231 --------DGIRPRVLRLWMAQNGVETHTMSGPFLKELDTLILQEKA 269


>gi|325684695|gb|EGD26849.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 431

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 121/320 (37%), Gaps = 14/320 (4%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L    + LVA SGG DSM LL  +  +      G  +  A  +DH LR  ++ E 
Sbjct: 11  FAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDHQLRADSQKES 65

Query: 71  RYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + +   C + ++      W K+  P++GL AAAR+ RY  + E A+ + A  ++TAH  D
Sbjct: 66  QLLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LE + ++  R    +          +     + + RP L   + D+ ++  ++ + + 
Sbjct: 126 DLLENILLKLVRSGIPRE---MNSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           ED +N      R R+R+ V  +        ++       ++             +     
Sbjct: 183 EDETNFTGITARNRLRQEVVPLLKKESPDLLENAWRFSQEITAEEDYFAQAAGKLPEPEP 242

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
                 I          L++        +        ++R++L  +  +      G + +
Sbjct: 243 FFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQEK----GGLHL 297

Query: 310 DRRANFLWITRAVRNLPTLI 329
                  W+    +  P+ +
Sbjct: 298 SFYQGHYWLYPVKQPAPSPL 317


>gi|88801375|ref|ZP_01116903.1| putative cell-cycle protein [Polaribacter irgensii 23-P]
 gi|88782033|gb|EAR13210.1| putative cell-cycle protein [Polaribacter irgensii 23-P]
          Length = 436

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 19/237 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
            +    +L+A+SGG DS+ L   L ++       K   +    +  LR   +  +  +V 
Sbjct: 15  FLKEKRLLIAISGGLDSVVLTRLLSTL-------KFDITLAHCNFNLRGIESNLDAIFVE 67

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++   L +     S+K  K     +     AAR  RY    E +   +   I+TAH  DD
Sbjct: 68  ELAKELAVKCFSTSFKTEKLAKEKKESTQIAARNLRYHWFQEISARHHFDYILTAHHADD 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET  +   R     G        T +  ++  + RP L+  RE+I  F  + NI W E
Sbjct: 128 NLETFLINLTRGTGLAGF-------TGIPPVHGNVIRPLLQFSREEILHFAKENNICWRE 180

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           D SN   ++ R ++R  +  +        +  F      +  +  ++  +     ++
Sbjct: 181 DQSNASTKYLRNKIRHKILPVLKDINPNMLASFSKTLENLQESAQIISDRIEETSLK 237


>gi|116493275|ref|YP_805010.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC
           25745]
 gi|116103425|gb|ABJ68568.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus pentosaceus ATCC
           25745]
          Length = 456

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 107/245 (43%), Gaps = 7/245 (2%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+VAVS G DS  L+ AL   ++       +     V+H LRE + +E R++   C + 
Sbjct: 20  KIVVAVSTGVDSTVLINAL---INSTKIKHQQLIVAHVNHQLREQSIEEERFLHKWCRQH 76

Query: 81  RIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +I      W K+  PQ G+ AAARE RY    +     +A +++TAH  D+Q E   M+ 
Sbjct: 77  QITFMETDWPKSQHPQHGVEAAAREFRYTFFKQVMHDQHAQVLLTAHNADEQAENFVMQV 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R        L+G+ +   +    W+ RPFL+  ++ +     +  + W ED +N    F
Sbjct: 137 IRGGWLN--QLNGIPERRTFAQG-WLIRPFLKFTKQFLIETAQENKLRWFEDQTNRTTEF 193

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R RVR  +           ++  Q  + ++     ++    L    +     S D+L +
Sbjct: 194 LRNRVRNEIIPAFRKENPRVVEHIQHYQDQLLEQSNLVDQVVLEKLTKLQRDESFDLLAL 253

Query: 260 DSTLL 264
               L
Sbjct: 254 RKESL 258


>gi|146296231|ref|YP_001180002.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409807|gb|ABP66811.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 455

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 132/356 (37%), Gaps = 29/356 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  +E VR+ +     L     +L+  SGG DSM LL  ++ +  +    ++  +   ++
Sbjct: 1   MDFLERVRWTIEKHNMLKKGDKVLIGCSGGIDSMVLLDCIYRLKDE---YELDITVAHLN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAK 115
           H LR+ A ++  +V D C R  I     S        + +     A R ARY    E   
Sbjct: 58  HMLRQEAIEDELFVIDTCKRYNIKCITRSIDVRKIKEERKLSEEEAGRLARYNFFYELVN 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           ++  + I+  H  +D +ET ++   R     G+         +  +   ++RP +   RE
Sbjct: 118 SLGLSKILLGHNKNDVVETFFLNLFRGSGLDGLA-------SIPPVRDIVARPLIYMSRE 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA--------LYLKMKKFQDLR 227
           +I  +  +  I +  D +N   +++R  VR  +  +            ++  +   +D  
Sbjct: 171 EIEEYAEENGIKYVIDKTNFSSKYKRNVVRNQILPVIREKFGDGVIDTIFRTINLIRDEN 230

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
           +++N  +  +  + +       +     +  +   L   L++ +               +
Sbjct: 231 LQINELIDDIFKRCVKKEDIYYVLDINPVTALPPFLQRRLVKRTFKEF---DRPISLEIV 287

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQ 343
           E V+               ++++R+ + +   +           P +    D RY+
Sbjct: 288 EDVLKLFSLPSGKKKVFDDLIVERQNDAIVFYKKAEEKTFCFEIPLKEEY-DIRYR 342


>gi|104773521|ref|YP_618501.1| hypothetical protein Ldb0367 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513516|ref|YP_812422.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103422602|emb|CAI97205.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116092831|gb|ABJ57984.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 431

 Score =  201 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 124/330 (37%), Gaps = 14/330 (4%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +    S  F    L    + LVA SGG DSM LL  +  +      G  +  A  +DH
Sbjct: 1   MDIKKRLSAFFAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDH 55

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119
            LR  ++ E + +   C + ++      W K+  P++GL AAAR+ RY  + E A+ + A
Sbjct: 56  QLRADSQKESQVLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKA 115

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++TAH  DD LE + ++  R    +          +     + + RP L   + D+ +
Sbjct: 116 DYLLTAHHGDDLLENILLKLVRSGIPRE---MNSLKPVSQRGQVKLVRPLLAVGKADLLA 172

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +  ++ + + ED +N      R R+R+ V  +        ++       ++         
Sbjct: 173 YAKKQGLEYVEDETNFTGITARNRLRQEVVPLLKKESPDLLENAWRFSQEMTAEEDYFAQ 232

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
               +           I          L++        +        ++R++L  +  + 
Sbjct: 233 AAGKLPEPEPFFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQE 291

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLI 329
                G + +       W+    +  P+ +
Sbjct: 292 K----GGLHLSFYQGHYWLYPVKQPAPSPL 317


>gi|325912386|ref|ZP_08174781.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D]
 gi|325475728|gb|EGC78899.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners UPII 143-D]
          Length = 418

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 9/255 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E + ++  
Sbjct: 3   LAGKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKY 59

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 60  CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 119

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 120 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 177

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252
           +   R R+R FV      D   L     +F      + +   +L  K      +  I+ +
Sbjct: 178 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 237

Query: 253 SQDILNIDSTLLFYL 267
           +   L+  +     L
Sbjct: 238 NAADLSDFNCQQLSL 252


>gi|309808776|ref|ZP_07702662.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a]
 gi|308168012|gb|EFO70144.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 01V1-a]
          Length = 418

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 8/227 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  
Sbjct: 3   LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 59

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P+ GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 60  CQQYKLQLEETKWDTPHPENGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 119

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 120 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 177

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +   R R+R FV      D   L     +F      + +   +L  K
Sbjct: 178 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEK 224


>gi|325689365|gb|EGD31371.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK115]
          Length = 425

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 116/303 (38%), Gaps = 26/303 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +        AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFEKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP     + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLFTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     I   Q        +  +LL+       G       +  E V+  L++     
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGMN--LSKQQFEEVLNILRTKANYQ 279

Query: 302 VSI 304
            ++
Sbjct: 280 HTL 282


>gi|325125152|gb|ADY84482.1| Putative cell cycle protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 431

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 124/330 (37%), Gaps = 14/330 (4%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +    S  F    L    + LVA SGG DSM LL  +  +      G  +  A  +DH
Sbjct: 1   MDIKKRLSAFFAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDH 55

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119
            LR  ++ E + +   C + ++      W K+  P++GL AAAR+ RY  + E A+ + A
Sbjct: 56  QLRADSQKESQVLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKA 115

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++TAH  DD LE + ++  R    +          +     + + RP L   + D+ +
Sbjct: 116 DYLLTAHHGDDLLENILLKLVRSGIPRE---MNSLKPVSQRGQVKLVRPLLAVGKADLLA 172

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +  ++ + + ED +N      R R+R+ V  +        ++       ++         
Sbjct: 173 YAKKQGLEYVEDETNFTGITARNRLRQEVVPLLKKESPDLLENAWRFSQEMTAEEDYFAQ 232

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
               +           I          L++        +        ++R++L  +  + 
Sbjct: 233 AAGKLPEPEPFFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQE 291

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLI 329
                G + +       W+    +  P+ +
Sbjct: 292 K----GGLHLSFYQGHYWLYPVKQPAPSPL 317


>gi|149372519|ref|ZP_01891631.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49]
 gi|149354562|gb|EDM43126.1| tRNA(Ile)-lysidine synthetase [unidentified eubacterium SCB49]
          Length = 436

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 120/309 (38%), Gaps = 23/309 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSD 75
           +    I+VA SGG DS  L   L  +                +  LR  A D +  +V +
Sbjct: 16  LKDKKIIVACSGGLDSTVLTRLLKQL-------GFTICIAHCNFSLRGEASDGDAAFVEN 68

Query: 76  VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           + + L I      +      +  +     AARE RY    E    I   LI TAH  DD 
Sbjct: 69  LATELDIPFYKTVFDTKAFANDHKLSTQMAARELRYQWFKELRTQIKFDLIATAHHADDM 128

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LETV +   R    +G+       T + +L   I RP L   R +I +F  +    W ED
Sbjct: 129 LETVLINLSRGTGIRGL-------TGIPELTETIIRPLLPFSRTEILNFAKKSEFYWRED 181

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            SN    + R  +R  V     +A    +K   +    +  A   L+  Y+ +    ++ 
Sbjct: 182 ASNASTDYLRNDLRHNVIPAYKNASKNVLKGLHNTVSHL-QATEQLVGDYIVLLYNLLVK 240

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGCVSIGRVVI 309
            + +   ID   L  +   SA +    +S  G+ + + ++     +SGK       R++ 
Sbjct: 241 ETSEGYEIDLIKLADIPNQSAVLYE-LLSPFGFTAWDDIINLTNAQSGKMVFSESHRLLK 299

Query: 310 DRRANFLWI 318
           DR+   L +
Sbjct: 300 DRKKLILTL 308


>gi|241668228|ref|ZP_04755806.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876763|ref|ZP_05249473.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842784|gb|EET21198.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 400

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 106/281 (37%), Gaps = 15/281 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L   + +   ++    P+HI++  SGG DS  LL     +        I   AI ++H
Sbjct: 1   MSLDKTQIISQILKH--SPSHIIIGYSGGVDSSVLLDITKDL-------DIPTIAIYINH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +   A     +   +C+   I     S   +       A A + R     E     ++ 
Sbjct: 52  NIHPDALKWQLHCQTICNNANIDFIAHSLDQAPKGESFEAWASKQRMDFFIEIMSQYSSP 111

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++  H  DDQ ET  +++ R     G+        + +     + RP L   ++DI+++
Sbjct: 112 TLLLGHHLDDQAETFLIQAIRGSGLAGLASMPYYKQLNHGA---VLRPLLDYTKKDIQNY 168

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAML 237
             Q  I+   D SN + ++ R  +R  +  I       +   + +   +  + NN +  L
Sbjct: 169 ASQNKINHIYDDSNENIKYRRNLIRNQIMPILEQINPNISRTLSRSAKICAESNNILQKL 228

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
           + + L    +    I  ++L +D  +   L+         Q
Sbjct: 229 LNEKLQKISKDNSLIISELLTLDKDIQKSLIHHWFKETTNQ 269


>gi|328945185|gb|EGG39340.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1087]
          Length = 425

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 134/348 (38%), Gaps = 30/348 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +        AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L  R+ D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFRKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     I   Q        +  +LL+       G       +  E V+  L++     
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLESFPGLN--LSKQQFEEVLNILRTKANYQ 279

Query: 302 VSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345
            ++     +V D +   +  I+R        IL   E  +  G Y+F 
Sbjct: 280 HTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327


>gi|325920753|ref|ZP_08182659.1| tRNA(Ile)-lysidine synthetase [Xanthomonas gardneri ATCC 19865]
 gi|325548805|gb|EGD19753.1| tRNA(Ile)-lysidine synthetase [Xanthomonas gardneri ATCC 19865]
          Length = 431

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 143/390 (36%), Gaps = 24/390 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  ILVA SGG DS  LL  L +    R+ G     A+ V H L   A     +    C
Sbjct: 10  PPGPILVAYSGGMDSGVLLQLLAAAPRYRNIG---LRAVHVHHGLHADADAWAAHCQRQC 66

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L+I   +   K ++  +GL   A        +          +  AH  DDQ ET  +
Sbjct: 67  DALQIPLQIARVKVAR-DSGLGLEAAARHARHAAFAETLTPGEWLTLAHHRDDQAETFLL 125

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ R     G  L+ M     +   + + RP L   R D+ ++     + W EDPSN D 
Sbjct: 126 RALRASGPDG--LAAMRAQRPFAGGM-LWRPLLHHARTDLLAYAQAHGLEWIEDPSNADI 182

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH---MRSIIAISQ 254
           R++R  +R  +  +         +          +A A+L+ +   +    + +  A+  
Sbjct: 183 RYDRNFLRTQLMPLLQQRWPQAAEALARSAHLSADASALLLQEDTALLPTMLTATGALDL 242

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312
             L          L  +         LP +   ++E+ +      ++   +  +V + R 
Sbjct: 243 QRLRAQPATRRPRLLRAWVSAAHAPPLPAHGITALEQEIDNHAPDRQARFAWQQVEVRRW 302

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP------- 365
              L++ R     P     P+  T WDG+   Q    + +Q+      +   P       
Sbjct: 303 RQCLYLLRPHAEWP-----PQWQTHWDGQAALQLPDGAQLQLHGAPGLRFAQPLLVCARH 357

Query: 366 SGIPPIIAQRALSSMPSKEGGKPLLAPFSR 395
           SG   ++ QRA S        +  L P+ R
Sbjct: 358 SGERIVLPQRAHSHRLKHLLQELDLPPWER 387


>gi|120553850|ref|YP_958201.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8]
 gi|120323699|gb|ABM18014.1| tRNA(Ile)-lysidine synthetase [Marinobacter aquaeolei VT8]
          Length = 445

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 130/346 (37%), Gaps = 23/346 (6%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V+ L     + VA+SGG DS  LL  + +          +  A+ ++H L+       R 
Sbjct: 21  VQKLPACQELWVALSGGLDSSLLLHVVAAAYP-------RVRALHINHQLQSNHDQTERA 73

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             D+C+ L +   V     +     L  +AR ARY +  E     +  L++ AH  DDQ 
Sbjct: 74  CIDLCAGLGVELQVRRVNVATGAGSLEESARAARYEVFREVL--GDNDLLLMAHHADDQA 131

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV  R  R     G+    +  ++       + RP+L   R  +     ++ +SW EDP
Sbjct: 132 ETVLFRLLRGTGVNGLAGMPVSRSL---GRGHLYRPWLGVSRSRLEQVAREQGVSWAEDP 188

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN  +  +R  +R  V           +K+      +       L  +   +  +S    
Sbjct: 189 SNQSEVHDRNYLRHSVMPGLKQRWPGLLKRVAH-SARACAESETLSQRLAELQWQSCGDD 247

Query: 253 SQDILNIDSTLLFYLLRVSA---AICGGQISLPGY----RSMERVMLFLKSGKRGCVSIG 305
              I     + L  + R +     I G  + +P       ++++++    S +   +   
Sbjct: 248 KGRIRLAPFSALGRIERRNLVRWWIHGRGLPVPALSDWCSALDQLL-HAGSDRTPEIRGD 306

Query: 306 RVVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDS 350
              I R  + L++   V   +    L P +   W G +  + +  S
Sbjct: 307 GFCIRRYRDHLYLVPQVAIPVGPRPLLPGQVMEW-GWWTLRLMPAS 351


>gi|224824978|ref|ZP_03698084.1| tRNA(Ile)-lysidine synthetase [Lutiella nitroferrum 2002]
 gi|224602649|gb|EEG08826.1| tRNA(Ile)-lysidine synthetase [Lutiella nitroferrum 2002]
          Length = 447

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 119/299 (39%), Gaps = 15/299 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS+ LL  L  +  +R    +K SA+ V H L   A     +   +C    + 
Sbjct: 31  VGLSGGIDSVVLLDLLVRLCLERG---LKLSAVHVHHGLSPQADAWAEHCRQLCLEWGVP 87

Query: 84  HSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
               + K        L A AR+ RY +        +A++++ AH  DDQ ETV ++  R 
Sbjct: 88  LRSEAVKVEVSGGESLEAVARQHRYRVYG----ESSASVVVLAHHQDDQAETVLLQLLRG 143

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              KG+       T+      W+ RP L   R +I ++   R + W ED SN D R+ R 
Sbjct: 144 AGPKGVAAM---PTLRRHAGRWLWRPLLAISRAEIEAYARWRQLVWVEDESNVDTRWRRN 200

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA---ISQDILNI 259
            +R  +  +   A+    +  Q   V + +A A+L  +      R   A   + Q + ++
Sbjct: 201 LLRHDILPLIESAIPHYRQHLQRAAVLMADASAVLDEQAEQDLQRCRDAGRLLVQPLSSL 260

Query: 260 DSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
                  +L+      G G  S          +L     +   + + +  + R    LW
Sbjct: 261 SPPRQRNMLQYWLERLGLGVASPEALEQFRHQVLHAAPDRNPELLLPQGRVFRYRGALW 319


>gi|291540846|emb|CBL13957.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Roseburia intestinalis
           XB6B4]
          Length = 485

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 114/329 (34%), Gaps = 23/329 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           + +     ++V +SGG+DS+     L  +L  R        AI V+H +R E ++ +  +
Sbjct: 13  KLMTEGDTVIVGLSGGADSVA---LLLVLLELRQRIGYTLLAIHVEHGIRGEESRKDAAF 69

Query: 73  VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI-----NATLIM 123
           V  +C +  I   +              G+  AAR  RY    + A+ +         I 
Sbjct: 70  VEKLCRQKNIPCRICPVNVPDYAATEGIGVEEAARILRYECYQKAAEELKQSGAGRVSIA 129

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  +D  ETV  +  R     GM   GM    +   ++ I RP L   R  I  +L +
Sbjct: 130 LAHHANDNAETVLFQMARGSGVHGM--CGMHPKRVLGDDILIVRPLLCVSRGQIEEYLKK 187

Query: 184 RNISWCEDPSNTDDRFERVRVRRF-------VRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
               +  D +N D  + R R+R         + +  +  +       Q     +      
Sbjct: 188 CGQEYRTDGTNLDINYSRNRIRHHILPELSVINEQAVSHINQSALLLQQAVSYMEQETKK 247

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
            +         + + +  +       +   ++        G     G   ++ V   ++ 
Sbjct: 248 AVQTCCIGGGGAYVILENEWKQYPEIIRQEIVHEVLGKTAGSRKDLGMVHVQDVCALMEK 307

Query: 297 GKRGCVSI-GRVVIDRRANFLWITRAVRN 324
                +++  ++   R    + + R  R+
Sbjct: 308 QTGREITLPYQMTASRIYEGVRLCRNQRD 336


>gi|229829758|ref|ZP_04455827.1| hypothetical protein GCWU000342_01855 [Shuttleworthia satelles DSM
           14600]
 gi|229791747|gb|EEP27861.1| hypothetical protein GCWU000342_01855 [Shuttleworthia satelles DSM
           14600]
          Length = 509

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 121/332 (36%), Gaps = 37/332 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
           L     +L+AVSGG+DS+ LL      L  R    +    + V+H LR   + ++  +V 
Sbjct: 18  LAPKDRLLLAVSGGADSVALLRL---ALIWRRKYDLLLRVLHVEHGLRGRESLEDAAWVR 74

Query: 75  DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +C    +   VV                 AAR  RY  + E A   +   I+ AH  +D
Sbjct: 75  KLCREHGLPCQVVPVDVRALAETEGRSEEEAARILRYQALEEAAARWDGAKIVLAHNLND 134

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ET+     R    +G+         +      I RP L   R +I  +L      W  
Sbjct: 135 AAETLLFHLVRGTGLEGLA-------AIPPKRGRIVRPLLAASRREIEDWLRDLGQEWRR 187

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-------DLRVKVNNAVAMLIPKYL- 242
           D SN +D + R R+R  V    L      ++          +    +       + +YL 
Sbjct: 188 DRSNEEDTYSRNRIRHQVLPPLLGENQRALEHMARTAGIAREASGYIRRQAKRALDRYLL 247

Query: 243 ------------TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                        +   +   +S D+   D  L   +LR++     G     G   ++ +
Sbjct: 248 PGGQERGDLTERLLPRPASWILSLDLKREDPFLQREILRLALETAAGGAKDLGCAHVQAL 307

Query: 291 MLFLK--SGKRGCVSIGRVVIDRRANFLWITR 320
           +  L+  +G+R  +  G +VI    +  + +R
Sbjct: 308 LDLLRGQAGRRLDLPYGLLVIRGYKSLQFFSR 339


>gi|315653940|ref|ZP_07906856.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus iners ATCC 55195]
 gi|315488636|gb|EFU78282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus iners ATCC 55195]
          Length = 418

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 9/255 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E + ++  
Sbjct: 3   LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESKIITKY 59

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 60  CQQYQLQLEETKWDAPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 119

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 120 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQE 177

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAI 252
           +   R R+R FV      D   L     +F      + +   +L  K      +  I+ +
Sbjct: 178 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQV 237

Query: 253 SQDILNIDSTLLFYL 267
           +   L+  +     L
Sbjct: 238 NAADLSDFNCQQLSL 252


>gi|89092105|ref|ZP_01165060.1| mesJ protein [Oceanospirillum sp. MED92]
 gi|89083840|gb|EAR63057.1| mesJ protein [Oceanospirillum sp. MED92]
          Length = 442

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 120/311 (38%), Gaps = 24/311 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              ++A SGG DS      L   L+ +     +   + V+H L   +     +      R
Sbjct: 32  DRWVIAHSGGLDSQ-----LLLHLAAKHLADRELLVVHVNHQLHPKSGAWAEFSQREAER 86

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L ++H V       P++   A AR+ARYA  +   +  +   ++  H  DDQ ET+  R 
Sbjct: 87  LGLSHKVSCVV---PESSSEAHARDARYAAFTSLLRENDC--LLMGHHADDQAETILFRM 141

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G  L GM  +  +     + RP L   R ++   +    +++ +DPSN+ D +
Sbjct: 142 IRGSGIRG--LQGMPFSRQFAQG-QLLRPLLNLERSELEGAVQNLGLAYIDDPSNSLDHY 198

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI--- 256
           +R  +R  V            ++FQ    ++ +   +L+  YL   + S       +   
Sbjct: 199 DRNYLRHHVLPRIKERWGSVTQRFQQ-NAQLLSQTELLLKHYLQADLDSCSEGDDCLDIR 257

Query: 257 --LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311
             L++       LLR   A+  G       + +  +   ++  +           V I R
Sbjct: 258 AWLSLPDIRQPELLRFWVALRTGVT--LNQKQVSSISSDLIMAQDDATPVFKRKGVEIRR 315

Query: 312 RANFLWITRAV 322
             N L++   V
Sbjct: 316 FQNQLYLVPEV 326


>gi|125716899|ref|YP_001034032.1| PP family ATPase [Streptococcus sanguinis SK36]
 gi|166988067|sp|A3CJX7|TILS_STRSV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|125496816|gb|ABN43482.1| Cell cycle control ATPase, PP-loop superfamily, putative
           [Streptococcus sanguinis SK36]
          Length = 425

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 119/303 (39%), Gaps = 26/303 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +L+AVSGG DSM LL  L  ++S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IVSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +        AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     I   Q        +  +LL+       G       +  E V+  L++     
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFSGLN--LSKQQFEEVLNILQTKANYQ 279

Query: 302 VSI 304
            ++
Sbjct: 280 HTL 282


>gi|26988340|ref|NP_743765.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida KT2440]
 gi|61216636|sp|Q88MG3|TILS_PSEPK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|24983090|gb|AAN67229.1|AE016350_2 cell cycle protein MesJ, putative [Pseudomonas putida KT2440]
          Length = 427

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 106/308 (34%), Gaps = 24/308 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L      R+       AI + H L+  A     +   +C    + 
Sbjct: 15  VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  + S P   L  AAR+ARYA   +        ++ T    DDQ ET+  R  R  
Sbjct: 73  LQVIHVQVS-PGASLEQAARDARYAAFRQVL--GPGDILFTGQHRDDQAETLLFRLLRGA 129

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L C R+ ++ +   + ++W EDPSN D +F R  
Sbjct: 130 GLRGLAAMPGQRAL---GQGSLVRPLLACSRQHLQEYAQAQGLTWIEDPSNVDTQFARNY 186

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRS--------IIAI 252
           +R  V            + F      +  A   +  L  + L +  +             
Sbjct: 187 LRGEVMPHLQQRWPQASQNFARAAEHLGEALGLLDELAQEDLALAGKGAPLAWPGLDSLD 246

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVID 310
              +L +        L+        +  LP  R       +    +  R    +    + 
Sbjct: 247 LAALLALSPARQRNALQYWL---SQRTRLPDTRHWAGWADLRDAGADARPVWRLADGRLV 303

Query: 311 RRANFLWI 318
           R    +W 
Sbjct: 304 RSHGRIWW 311


>gi|324991855|gb|EGC23778.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK405]
 gi|324996255|gb|EGC28165.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK678]
 gi|327458479|gb|EGF04829.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1]
 gi|327463845|gb|EGF10161.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1057]
 gi|327471619|gb|EGF17062.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK408]
          Length = 425

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 120/303 (39%), Gaps = 26/303 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +L+AVSGG DSM LL  L  ++S +    I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLL--IVSQKELA-IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +        AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I + ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQYFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     I   Q        +  +LL+       G       +  E V+  L++     
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279

Query: 302 VSI 304
            ++
Sbjct: 280 HTL 282


>gi|307243197|ref|ZP_07525370.1| tRNA(Ile)-lysidine synthetase [Peptostreptococcus stomatis DSM
           17678]
 gi|306493458|gb|EFM65438.1| tRNA(Ile)-lysidine synthetase [Peptostreptococcus stomatis DSM
           17678]
          Length = 459

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 14/194 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           I+V +SGG DS+ LL  L+ +  ++    IK  A+ ++H +R   A  +  YV  +C  L
Sbjct: 22  IVVGLSGGPDSVCLLHTLYRLSKEK---DIKIYAVHLNHMIRGLDAFLDSLYVMKLCQSL 78

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   + +    K     + GL   AR+ RY + SE    + A  I   H  +DQ ET+ 
Sbjct: 79  YIPCFIRTIDVPKYCQENKLGLEDGARKLRYQVFSEVRDRLGAKKIAIGHNKNDQAETIL 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    +G+        I Y     + RP L   RE I ++ ++  +    D SN +
Sbjct: 139 MRIMRGTGLQGL------RGIEYKRKDGVIRPILDIDRESIEAYCMEHKLLPRIDSSNLE 192

Query: 197 DRFERVRVRRFVRD 210
             + R ++R  +  
Sbjct: 193 PIYSRNKIRLKILP 206


>gi|330686057|gb|EGG97679.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU121]
          Length = 433

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 108/253 (42%), Gaps = 12/253 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            HI++AVS G DSM LL  L   L++      K + I V+H LR+ + +E  +    C  
Sbjct: 13  DHIVLAVSTGIDSMCLLHLL---LNEYQHTYSKLTCIHVNHGLRQASIEEEAFFKTYCEE 69

Query: 80  LRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +I + +     S+       +   +R+ RY       K + A +++TAH  DDQ+ET++
Sbjct: 70  HQIEYFIKRLDLSETVEAGNSIQNVSRQYRYDWFDSIMKQLGANVLLTAHHQDDQIETIF 129

Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R       +  +G++       Y     + RP L   +  I+S+  Q NI + ED SN 
Sbjct: 130 YRLFTGRFTRSHLGIAYTSQRSSY----QLIRPMLDISKAAIKSYQNQYNIPFFEDVSNH 185

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-IAISQ 254
            + + R  +R  +    +    L +     L+   +  +A L          ++ ++  Q
Sbjct: 186 KNVYVRNDIRNRIIPAVMDNQQLDVAHLLKLKSWHDQELATLRKSAHHFIKEAVQVSEKQ 245

Query: 255 DILNIDSTLLFYL 267
           D + I       L
Sbjct: 246 DKIVIPRGRFNRL 258


>gi|148549375|ref|YP_001269477.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida F1]
 gi|148513433|gb|ABQ80293.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida F1]
          Length = 427

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 86/216 (39%), Gaps = 8/216 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L      R+       AI + H L+  A     +   +C    + 
Sbjct: 15  VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  + S P   L  AAREARYA   +        ++ T    DDQ ET+  R  R  
Sbjct: 73  LQVIHVQVS-PGASLEQAAREARYAAFRQVL--GPGDILFTGQHRDDQAETLLFRLLRGA 129

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L C R+ ++ +   + ++W EDPSN D +F R  
Sbjct: 130 GLRGLAAMPGQRAL---GQGSLVRPLLACSRQHLQDYAQAQGLTWIEDPSNVDTQFARNY 186

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +R  V            + F      +  A+ +L  
Sbjct: 187 LRGEVMPQLQQRWPQASQNFARAAEHLGQALGLLDE 222


>gi|73540827|ref|YP_295347.1| PP-loop [Ralstonia eutropha JMP134]
 gi|72118240|gb|AAZ60503.1| PP-loop [Ralstonia eutropha JMP134]
          Length = 484

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 144/406 (35%), Gaps = 38/406 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA+SGG DS+ LL A  + +S       +  A+ V H L+  A     + +D+C+R  
Sbjct: 46  VAVALSGGRDSVALLHATQAAVSAWRMPA-RVVALHVHHGLQAQADAWDAFCADLCARWE 104

Query: 82  IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           + + V           G+ AAAR ARY  + +  +   A  ++ AH  DDQ+ETV +R  
Sbjct: 105 LGYFVRRVSVQAGTGEGIEAAARRARYEALGDMCRASGARFLLFAHHLDDQVETVLLRLF 164

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     GM        +    ++ + RP+L   R DI S+     ++W +DPSN   R+ 
Sbjct: 165 RGAGVAGMSGMPAMRKLDEAGDIMLLRPWLEVPRADIDSYCAAHELAWIDDPSNDSTRYA 224

Query: 201 RVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS------IIAI 252
           R  +R  +   + D  AL   + +      +    +  L    L            +  +
Sbjct: 225 RNALRAQLPLLERDFPALRANVAQAAAHFAQAARMLDDLAGTELARLAAPGRDPDTLAEL 284

Query: 253 SQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
               L  + ++    +LR+     G +       +  R  L   SG    ++   +V+ R
Sbjct: 285 DLSGLRALPASHADAVLRLWLRDLGARAPSTARLAAMREQLLDHSGGEPAIAHDNLVLRR 344

Query: 312 RANFLWITRAVRNLPTLILYPEETT-------VWDGRYQF-------------------- 344
               +       + P                  W G  +F                    
Sbjct: 345 FQGRVLACTPEPDAPPTAQALTWRGEPRIVVPAWRGELRFTRDDTFGVPEAVLQQPLRIA 404

Query: 345 QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLL 390
           Q      I + P    +A   +     + +     +P    G  L+
Sbjct: 405 QRTGGERIVLRPGGPARALKQAYQEAGVPRWRRCWLPLLWAGDTLV 450


>gi|306832496|ref|ZP_07465648.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425396|gb|EFM28516.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 421

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 24/262 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I+   +F +       +L+AVSGG DSM LL  L+     R   +I+     ++H  R+ 
Sbjct: 9   IQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIY---RDKLEIEIGIAHINHKQRQE 61

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++ E  Y+ +   + +I   V  +           AAR+ RY    +     N T ++TA
Sbjct: 62  SEMEEAYLCEWAEKHQIPIYVDYFSGIFS----EKAARDFRYQFFKKIMVEKNYTAVVTA 117

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ ET++MR  R    +   LSGM     +     + RPFL   ++D+        
Sbjct: 118 HHADDQAETIFMRFLRGSRLR--HLSGMQAVSSFGTG-ELIRPFLTIPKKDLPE------ 168

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I   ED SN    + R R+R       L +L  +  KF+     +      L      + 
Sbjct: 169 IFHFEDDSNQSLDYLRNRIRNQ----YLPSLEKENPKFRQALQHLGQESQQLFQAIQDLT 224

Query: 246 MRSIIAISQDILNIDSTLLFYL 267
               +      L   + +   L
Sbjct: 225 AEIDVTDCSQFLAQTTAVQTVL 246


>gi|291548189|emb|CBL21297.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Ruminococcus sp.
           SR1/5]
          Length = 318

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 112/297 (37%), Gaps = 33/297 (11%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I  VR ++R    L     ++  VSGG+DS+ +L  L S+  +  F       + V H +
Sbjct: 2   ITRVRKYIRDNRMLKAEDMVVAGVSGGADSIAMLHILKSLQKEIGF---SMEVVHVHHGI 58

Query: 63  R-ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R + A  + ++V  +C    I     H  V   + K + G     R  R     E  K +
Sbjct: 59  RGQEADRDEQFVEKICRDWGIPFRSRHYPVPELSGKWKLGEEETGRIVRKQAFQEEKKRL 118

Query: 118 NAT----------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             +           +  AH  +D  ET+     R    +G+       + +  ++  I R
Sbjct: 119 GFSGEQSKKNGQFRVALAHNRNDLAETMLHHLARGTGIRGL-------SGIQAVSGEIIR 171

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDL 226
           P L   R++I ++L +R IS+  D SN  D + R R+R  +       +  K  +   + 
Sbjct: 172 PVLCLERKEIVNYLKERGISYITDSSNLSDNYTRNRIRNHILPAMEQKINAKAVEHMAET 231

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIA----ISQDILNIDSTLLFYLLRVSAAICGGQI 279
              +  A + L  K   +           + +     D  L  Y +  +  I  G+ 
Sbjct: 232 ARVLAEADSYLQKKGRELLAGCRKENGYLLDEKFFAQDPILQEYAVMEAFEILSGKR 288


>gi|260587360|ref|ZP_05853273.1| tRNA(Ile)-lysidine synthase [Blautia hansenii DSM 20583]
 gi|260542227|gb|EEX22796.1| tRNA(Ile)-lysidine synthase [Blautia hansenii DSM 20583]
          Length = 451

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/317 (19%), Positives = 118/317 (37%), Gaps = 26/317 (8%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V F +   + +   +H++V +SGG+DS+     L  +   +   + +  A+ V+H +R
Sbjct: 5   EKVFFCIEKYQMIPKNSHVIVGLSGGADSVC---LLKLLKEYKKQQEFQLYAVHVNHHIR 61

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI- 117
            E A  +  +   VC +L +  +V  +       + +  L  A R  R     +  K I 
Sbjct: 62  GEEAVRDEEFSKAVCKKLEVPFTVFHYDVPQIAKEEKLSLEEAGRNVRREAFEKVMKNIK 121

Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                +I  AH  +D  ETV     R     G+G        +        RP L  +R 
Sbjct: 122 VSGRKMIALAHHENDNAETVLHNLMRGSGAAGLGGI----RPVSGEKDSYIRPLLFVKRA 177

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV----RDIDLHA---LYLKMKKFQDLRV 228
           +I  +L  + ISW  D +N +  + R ++R  +     +I+  A   +    +    +  
Sbjct: 178 EIEKYLKGQGISWVTDSTNEETEYTRNKIRHQIIPVMEEINPQAVSCIGRAAENMWKIEE 237

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
            +     +L  KY+         I+++  +    +  YL+                  +E
Sbjct: 238 YLQEQTDILYRKYVKKT-GDTFCIAKECFSEKEIMQSYLIMRVLEQASKGKKNITATHIE 296

Query: 289 RVMLFLKSGKRGCVSIG 305
            V    K      VS+ 
Sbjct: 297 AVRRLFKGRTGASVSLA 313


>gi|291542480|emb|CBL15590.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Ruminococcus bromii
           L2-63]
          Length = 442

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 61/336 (18%), Positives = 127/336 (37%), Gaps = 24/336 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     ++VA+SGG+DS  LL    S+        +   A  ++H +R + A  +  +  
Sbjct: 15  LEKGDSVIVALSGGADSTALLSVFVSLKEK---YNLSIYAAHINHNIRGDEATRDENFCK 71

Query: 75  DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +C +      + S        + +       R  RYA   E ++ +    I TAHT  D
Sbjct: 72  ILCKKFNTELFIKSVDVPTLAKQQKISEELCGRNVRYAFFEELSQKL-CAKIATAHTASD 130

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ET+     R  +  G+       + +      I RP +   R DI S+  + N+ +  
Sbjct: 131 NAETLIFNIARGASLTGL-------SAIPPKRGNIIRPLIELSRGDIESYCEENNLEYVT 183

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKK----FQDLRVKVNNAVAMLIPKYLTVHM 246
           D +N  D + R  +R  +    L  L    ++      +   +  + +     K +    
Sbjct: 184 DSTNLADDYTRNYIRHNIIPC-LKKLNPSFERTALGLSENAGESADFIKECAEKAVHDCK 242

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
                  + +L++DS +L  +L     +       P  +++  +   +++G    +S  R
Sbjct: 243 GDFGYDCKKLLSLDSAVLKEML--FILLKNNCNISPERKTILLLCEIIRNGGSVELSKQR 300

Query: 307 VVIDRRANFLWIT-RAVRNLPTLILYPEETTVWDGR 341
             + ++    ++  +   +   + L    T  +DG+
Sbjct: 301 TAVSKQGILRFVCPKNSPDFNEIPLKNNMTFSYDGK 336


>gi|253581056|ref|ZP_04858317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847719|gb|EES75688.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 485

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 110/322 (34%), Gaps = 25/322 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRY 72
           R +     +L  VSGGSDSM +L  L  +     F       + + H +R   A  +  +
Sbjct: 13  RMIGKNDVVLAGVSGGSDSMAMLRILKELQGKLDF---TLRVVHIHHGIRGKEADRDQSF 69

Query: 73  VSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINAT----LIMT 124
           V ++C + +I  +V  +       + + G     R  R       A           I  
Sbjct: 70  VENICRKWQIPCTVYCYDVPGLSREWKLGEEETGRIVRKEAFQREAAVCGRKDSEIKIAL 129

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  +D  ET+     R    +G+         +  ++  I RP L   R+ I  +L ++
Sbjct: 130 AHNQEDLAETMLHNLCRGTGLRGL-------CTMRPVDGEIIRPILCLSRDKIAEYLKEK 182

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            IS  +D +N  D + R R+R  +  +    +  K            +     + +   +
Sbjct: 183 KISHIQDSTNLSDEYTRNRIRHNILPMLERQVNGKAAAHMAETAARISQAEEYLTQQSCL 242

Query: 245 HMRSIIA-----ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
            +           ++        +  Y L+ +     G+         E+V+   +    
Sbjct: 243 VLSEFQKGKGYYFTEKFFMEPQIIQVYALQQAMEQLAGRRKDLAAVHYEKVLELYEMQTG 302

Query: 300 GCVSI-GRVVIDRRANFLWITR 320
             +S+   +   R    + + R
Sbjct: 303 RRISLPYHMEARRDYEGVRLCR 324


>gi|322436275|ref|YP_004218487.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX9]
 gi|321164002|gb|ADW69707.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX9]
          Length = 351

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 8/227 (3%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     +  AVSGG+DS+ +L+ + +         +  SA+ V+H LR   +  +  +V+
Sbjct: 9   LKVGERVCCAVSGGADSVAMLLLVCAANGGSKGLGLGVSAVHVNHGLRGAESDGDEGFVA 68

Query: 75  DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +C  L +  ++    V+ + +     +  AARE RY           A +++TAHT DD
Sbjct: 69  ALCEGLGVPLTIERADVAGRVAARGETVEEAAREVRYECFRRLIAEGRANVVLTAHTLDD 128

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV M+  R    +G+G  G+   +       + RP L  RR ++  FL  +   W E
Sbjct: 129 QAETVLMKLLRGAWTEGLG--GISPVVEVP-GGRVVRPVLGVRRGELVEFLKAKGQGWRE 185

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           D SN D+ F R R+R  V  +         +   +L        A  
Sbjct: 186 DSSNADEAFTRNRLRHTVMPVLRAENPSVDRTLANLAEVAREEEARW 232


>gi|163755244|ref|ZP_02162364.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1]
 gi|161324664|gb|EDP95993.1| tRNA(Ile)-lysidine synthetase [Kordia algicida OT-1]
          Length = 436

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 133/351 (37%), Gaps = 46/351 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I     F++     + +L+A+SGG DS+ L   L+ +           +    +  LR
Sbjct: 7   KHIAENLPFLKQ----SKLLIAISGGLDSVVLANLLYKL-------DFSIAFAHCNFQLR 55

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
            E + ++  +V  + + L+       +      ++ +  +  AAR  RY    E A    
Sbjct: 56  GEESNEDEVFVKTLGNSLKAGVFTKKFNTETYANEQKLSIQMAARALRYEWFQEIADKFQ 115

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I+TAH  DD LET  +   R     G+       T +   N  I RP L   + DI 
Sbjct: 116 YDYILTAHHQDDMLETFLINLSRGTGIDGL-------TGIPQQNGNIVRPLLPFTQVDIL 168

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN------ 232
           ++    N+ W ED SN   ++ R ++R  +  +        MK FQ  +  +        
Sbjct: 169 AYAKNNNLLWREDSSNASTKYVRNKIRHDIVPLLKELHPTFMKNFQATQQHLQESNSIIK 228

Query: 233 -AVAMLIPKYLTVHMRSIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSME 288
            A+  L  + +T       +I  + +         LF LLR             G+   +
Sbjct: 229 DAIQKLQAEIITEVSDGNYSIEIEAIQQQKFPKAYLFELLRDF-----------GFHEWQ 277

Query: 289 RV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
            V  +L  +SGK+   +  R++ DR   F+        +   ++   E+ +
Sbjct: 278 DVKDLLNAQSGKQVFSAKYRLIKDRTQLFIQKRNQKEEVSEFLIQDSESII 328


>gi|309809607|ref|ZP_07703464.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D]
 gi|308170088|gb|EFO72124.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners SPIN 2503V10-D]
          Length = 430

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 13/271 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  
Sbjct: 15  LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 71

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 72  CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 131

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 132 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 189

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           +   R R+R FV      D   L     +F      + +   +L  K +  H      + 
Sbjct: 190 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEK-IRYHKLLNGIVQ 248

Query: 254 QDILNIDSTLLFYLLRVSAAIC----GGQIS 280
            + +++       L      +     G Q+ 
Sbjct: 249 VNAVDLSDFNCHQLSLYFNWLIDKEWGRQVY 279


>gi|288904236|ref|YP_003429457.1| hypothetical protein GALLO_0013 [Streptococcus gallolyticus UCN34]
 gi|325977213|ref|YP_004286929.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288730961|emb|CBI12505.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|325177141|emb|CBZ47185.1| tRNA(Ile)-lysidine synthetase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 421

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 104/262 (39%), Gaps = 24/262 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I+   +F +       +L+AVSGG DSM LL  L+     R   +I+     ++H  R+ 
Sbjct: 9   IQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIY---RDKLEIEIGIAHINHKQRQE 61

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++ E  Y+ +   + +I   V  +           AAR+ RY    +     N T ++TA
Sbjct: 62  SEMEEAYLCEWAEKHQIPIYVDYFSGIFS----EKAARDFRYQFFKKIMVEKNYTAVVTA 117

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ ET++MR  R    +   LSGM     +     + RPFL   ++D+        
Sbjct: 118 HHADDQAETIFMRFLRGSRLR--HLSGMQAVSSFGTG-ELIRPFLTIPKKDLPE------ 168

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I   ED SN    + R R+R       L +L  +  KF+     +      L      + 
Sbjct: 169 IFHFEDDSNQSLDYLRNRIRNQ----YLPSLEKENPKFRQALQHLGQESQQLFQAIQDLT 224

Query: 246 MRSIIAISQDILNIDSTLLFYL 267
               +      L   + +   L
Sbjct: 225 AEIDVTDCSQFLAQTTAVQTVL 246


>gi|256848386|ref|ZP_05553829.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714984|gb|EEU29962.1| tRNA(Ile)-lysidine synthetase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 448

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 128/305 (41%), Gaps = 26/305 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E  RFF  SL  P  ++VAVS G DSM LL  L S+LS       +     V+H LR  
Sbjct: 13  LERYRFF--SLKQP--LVVAVSTGVDSMTLLHVLGSLLSAD-----QLVVAHVNHHLRAQ 63

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++ E +++   C ++ +   V  W+N  PQ G+  AAR+ RY   ++      A  ++TA
Sbjct: 64  SQQEEQFLRQQCQQMGVRLYVDQWEN-HPQHGIENAARQERYRFFAKVMHETKAAYLLTA 122

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +D  ET+ M+  R          G+ +   +  N  + RP LR  ++ +  +     
Sbjct: 123 HHENDLAETMLMKLLRTG--DATATVGIREARPFA-NGQLLRPLLRVTKKSLVEYARVHQ 179

Query: 186 ISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           + W ED +N +D   R RVR              +  L     +  +L    ++ V+ L+
Sbjct: 180 LKWYEDATNQEDMTLRNRVRHHYLPEWERENPRVVDHLLKFHDQLTELLTMKDDIVSQLM 239

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
            + +      I +  Q +  I   LL+  +         +      +   ++  FL + +
Sbjct: 240 TRIVHNGQLDITSYQQQVPVIRHCLLYRWVNDQGMFALQE------QRSHQIDQFLCNQQ 293

Query: 299 RGCVS 303
               +
Sbjct: 294 SPSST 298


>gi|94310033|ref|YP_583243.1| tRNA(Ile)-lysidine synthetase-like protein [Cupriavidus
           metallidurans CH34]
 gi|93353885|gb|ABF07974.1| tRNA(Ile)-lysidine synthetase [Cupriavidus metallidurans CH34]
          Length = 487

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 127/317 (40%), Gaps = 11/317 (3%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  + VA+SGG DS+ LL A    L+  ++   +  A+ V H L+  A D  R+ +  C
Sbjct: 46  QPVTVAVALSGGRDSVALLHATREALAA-TWPLARLVALHVHHGLQAQADDWDRFCTARC 104

Query: 78  SRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             L++  S       +    G+ AAAR AR+  +    +   A L++ AH  DDQ+ETV 
Sbjct: 105 GDLQVPLSSARVTVQAATGEGIEAAARRARHEALGRMCREQGARLLLFAHHRDDQVETVL 164

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +R  R     GM        +    ++ + RP+L   R +I  +   + + W +DPSN D
Sbjct: 165 LRLFRGTGVAGMAGMPARRPLDERGDIQLVRPWLGVTRAEIDDYCAWQGLRWIDDPSNAD 224

Query: 197 DRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253
            RF R  +R  +  +     ALY  + +      +    +  L  + L   + +      
Sbjct: 225 TRFARNALRAQLPALLQAFPALYENVAQAATHFAQAAGMLDALAAQSLASLVCAGRDADT 284

Query: 254 ------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
                   +  + S     +LR      G Q       +  R  L    G    ++   +
Sbjct: 285 ISELDLAGLRALPSEHADAVLRHWLRDLGTQSPSTARLAAMRAQLIQHQGGEPAIAHDGL 344

Query: 308 VIDRRANFLWITRAVRN 324
           V+ R  + L    AV  
Sbjct: 345 VLRRFRDRLLACPAVSA 361


>gi|78189702|ref|YP_380040.1| MesJ protein [Chlorobium chlorochromatii CaD3]
 gi|78171901|gb|ABB28997.1| MesJ protein [Chlorobium chlorochromatii CaD3]
          Length = 354

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 128/335 (38%), Gaps = 35/335 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            FL  +   R   R       +L+AVSGG DSM LL    +V     F +   +    + 
Sbjct: 36  QFLEQLTKRRLVQR----GDKVLLAVSGGPDSMALLSLFCAVQP---FLQCSLALAHCNF 88

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAK 115
            LR+  +  +  +V +  +   +   V  ++        +  L  +AR  RYA      +
Sbjct: 89  QLRDSESDSDEAFVQEQATARNLPCFVERFETRNVAATWKKSLEESARLLRYAFFERLMQ 148

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 + T H  +D  ET+     R  +  G+         +   +  I RP L   + 
Sbjct: 149 VHGFHKVATGHHVNDNAETILFNLVRGTSLLGL-------RGIRAQHGTIIRPMLLLHKP 201

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVN 231
            I ++L ++ I +  D SN    ++R  +R  +  +        L   +++  +   ++ 
Sbjct: 202 AITTYLHEQQIPYRVDSSNEGTEYDRNFIRHRLIPLIEERFPRKLLPSLQRLSEQAGELE 261

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF------YLLRVSAAICGGQISLPGYR 285
             + +   +        ++ +  + LN+ +           +++ +    G  +     +
Sbjct: 262 EFLELYFEQLT--QREPLLQLHNNQLNVKALRQLTTFEQKEIIKRALWELGAPV---DGQ 316

Query: 286 SMERVMLFLKSGKRGCVSIGRVV-IDRRANFLWIT 319
           +++R++  L++     V +GR   ++ + N L+ +
Sbjct: 317 TLQRMVELLQTQSGRMVQLGRKWQVEWKGNSLYFS 351


>gi|317133212|ref|YP_004092526.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3]
 gi|315471191|gb|ADU27795.1| tRNA(Ile)-lysidine synthetase [Ethanoligenens harbinense YUAN-3]
          Length = 457

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 115/285 (40%), Gaps = 20/285 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     +L A SGG+DS  LL  L ++   R    ++  A  ++H LR E A  +  +V 
Sbjct: 13  LAPGDAVLAAFSGGADSTALLHLLCAL---REEWGLRVFAAHLNHGLRGEEADRDEAFVR 69

Query: 75  DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             C    +   V    V  + ++         R  RYA  +E A+ + A  I TAHT  D
Sbjct: 70  ARCVEWGVPCFVRRTDVRAEAARTGESEELCGRRLRYAFFAEQAEALGA-KIATAHTLSD 128

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+ +   R     G GL+G+        N  I RP +   R ++  +     +++  
Sbjct: 129 SVETMLLNLAR-----GTGLAGLRGIPPVRGN--IVRPLIETTRAEVEVYCAAHGLNYVT 181

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D +N    + R R+R  V    L AL   +++     +++      ++       +R+  
Sbjct: 182 DSTNFSRAYGRNRIRLDVVP-ALRALNPALERTLARDMRLFARDEAVLEDLTASLLRAAA 240

Query: 251 A---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
                + ++L         L   +A   G +      R+ME+++ 
Sbjct: 241 VPGGFAAEVLRASPLCARALAAAAAQTTGLRPEAVHVRAMEQLLR 285


>gi|307266280|ref|ZP_07547821.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918730|gb|EFN48963.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 458

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 126/308 (40%), Gaps = 24/308 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    I +++ + + +     I++ VSGG DS+ +L  L+++   +    +K   + V+H
Sbjct: 1   MIDKVISTIKRY-KMIEANDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R E AK + ++V D+C +L++        V     +       A R  RY    E  +
Sbjct: 57  MIRGEEAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLR 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I  AH  +D +ETV++   R     G+         +  +N  I RP +   RE
Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227
           +I +++ ++++    D +N +D ++R +VR  +            +  +Y   K   +  
Sbjct: 170 EIENYIKEKDLKPVIDFTNYEDLYKRNKVRLKLIPYINETFEVDIIENIYRMAKIILEEN 229

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +      +  +    +   I A  + +      +   L+R+      G I    Y  +
Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKLRAQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289

Query: 288 ERVMLFLK 295
           E V+  L 
Sbjct: 290 EDVLSLLD 297


>gi|313500224|gb|ADR61590.1| TRNA(Ile)-lysidine synthase [Pseudomonas putida BIRD-1]
          Length = 427

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 88/216 (40%), Gaps = 8/216 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL  L      R+       AI + H L+  A     +   +C    + 
Sbjct: 15  VAFSGGLDSTVLLHLLAEYA--RNHASPPLRAIHIHHGLQAAADAWPAHCQAICDNFDVE 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  + S P   L  AAR+ARYA   +        ++ T    DDQ ET+  R  R  
Sbjct: 73  LQVIHVQVS-PGASLEQAARDARYAAFRQVL--GPGDILFTGQHRDDQAETLLFRLLRGA 129

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+       T+       + RP L C R+ ++ +   + ++W EDPSN D +F R  
Sbjct: 130 GLRGLAAMPGQRTL---GQGRLVRPLLACSRQHLQDYAQAQGLTWIEDPSNLDIQFARNY 186

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +R  V            + F      +  A+++L  
Sbjct: 187 LRGEVMPHLQQRWPQASQNFARAAEHLGEALSLLDE 222


>gi|225869500|ref|YP_002745447.1| PP-loop family protein [Streptococcus equi subsp. equi 4047]
 gi|254789048|sp|C0MAT4|TILS_STRE4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225698904|emb|CAW91895.1| PP-loop family protein [Streptococcus equi subsp. equi 4047]
          Length = 427

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 116/292 (39%), Gaps = 21/292 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM LL  LH+  +     +I+     V+H  R  + DE  Y+     +  
Sbjct: 22  VLIAVSGGVDSMNLLHFLHAFQAKL---QIRIGIAHVNHKQRPESDDEEAYLRSWAKKHA 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           I   V  ++ +        AAR  RY    E  +  + + ++TAH  DDQ ET+ MR  R
Sbjct: 79  IPIYVAYFQGAFS----ENAARHLRYQFFEEIMQQEHYSALVTAHHADDQAETILMRLIR 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   L+G+ +   +  N  + RPFL   + ++       N    ED SN    + R
Sbjct: 135 GSRLR--HLAGIREVQPFA-NGQLIRPFLTVSKAELP------NPFHFEDHSNDSMAYFR 185

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
            RVR       L     +  +     + ++    +L+  +  +            L   +
Sbjct: 186 NRVRHH----YLPDFKRENPQATQSLIDLSAESRLLLQAFDDLTKGLEFHRLNCFLAQSA 241

Query: 262 TLLFYLLRVSAAICGG-QISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
            + F+LL+          I    +  +  ++   K G     +   ++I++ 
Sbjct: 242 AVQFFLLQHYLETFPQLAIKKSQFDDLLHIIRRQKQGIYPIKNTYCLLIEKE 293


>gi|56477787|ref|YP_159376.1| ATPase [Aromatoleum aromaticum EbN1]
 gi|61216414|sp|Q5P2I9|TILS_AZOSE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56313830|emb|CAI08475.1| tRNA(Ile)-lysidine synthetase [Aromatoleum aromaticum EbN1]
          Length = 423

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 111/319 (34%), Gaps = 17/319 (5%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA SGG+DS  LL  L  +   R        A  V H L   A   + + +  C+ L
Sbjct: 12  RLCVAFSGGADSTTLLHLLARL---RPRFGFDLCAAHVHHALSPNADAWLDFCARQCAAL 68

Query: 81  RIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +A      + ++    GL AAARE R+A +S          ++  H  DDQ ET+  R 
Sbjct: 69  DVAFHPFREQVARDHPAGLEAAAREVRHAALSRVT----CDWLVFGHHQDDQAETLLFRL 124

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G       +           RP L  RR DIR+F    ++ W ED SN D R 
Sbjct: 125 LRGAGVRGAAAMAAIEPGFPGR----LRPLLGVRRADIRAFAQAASLEWIEDESNADPRH 180

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDIL 257
            R  +R  V  +   A    +            A  +L  +             +   +L
Sbjct: 181 ARNFLRHHVFPLFGEAFPGAVPALARASGHFREADGLLGDLAALDYAACGGSPWLRDRLL 240

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRVVIDRRANFL 316
            +    +  LLR      G     P    +   +  L++      + +G        + L
Sbjct: 241 MLSDERVRNLLRWRIRQMG--CEAPARARLVEAVRQLRATHAPLYLPLGTAACCTYRDRL 298

Query: 317 WITRAVRNLPTLILYPEET 335
           W+       P   L   + 
Sbjct: 299 WLEPQRDGAPEQPLPWRQE 317


>gi|326391164|ref|ZP_08212709.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992797|gb|EGD51244.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus JW
           200]
          Length = 458

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 126/308 (40%), Gaps = 24/308 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    I +++ + + +     I++ VSGG DS+ +L  L+++   +    +K   + V+H
Sbjct: 1   MIDKVISTIKRY-KMIEANDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R E AK + ++V D+C +L++        V     +       A R  RY    E  +
Sbjct: 57  MIRGEEAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLR 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I  AH  +D +ETV++   R     G+         +  +N  I RP +   RE
Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227
           +I +++ ++++    D +N +D ++R +VR  +            +  +Y   K   +  
Sbjct: 170 EIENYIKEKDLKPIIDFTNYEDLYKRNKVRLKLIPYINETFEVDIIENIYRMAKIILEEN 229

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +      +  +    +   I A  + +      +   L+R+      G I    Y  +
Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKLRAQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289

Query: 288 ERVMLFLK 295
           E V+  L 
Sbjct: 290 EDVLSLLD 297


>gi|21282193|ref|NP_645281.1| hypothetical protein MW0464 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49485373|ref|YP_042594.1| hypothetical protein SAS0466 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297207388|ref|ZP_06923827.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910347|ref|ZP_07127800.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|61217254|sp|Q6GBX9|TILS_STAAS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217380|sp|Q8NXZ4|TILS_STAAW RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21203629|dbj|BAB94329.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49243816|emb|CAG42241.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887951|gb|EFH26845.1| tRNA(Ile)-lysidine synthase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300888336|gb|EFK83523.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 431

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEVYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLDRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +       +    +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKASHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   N+ ++L   +L
Sbjct: 244 SKYLEVSRQAFNNLPNSLKMVVL 266


>gi|329769331|ref|ZP_08260747.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325]
 gi|328839134|gb|EGF88719.1| hypothetical protein HMPREF0433_00511 [Gemella sanguinis M325]
          Length = 439

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 105/268 (39%), Gaps = 20/268 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I +A+SGG DS+ L   L +   +      +     ++H LRE + +E  +V    
Sbjct: 9   KEDKIAIALSGGVDSIVLFHLLVT---EYKDSYKELVVFHINHGLREESYEEAGFVEKFV 65

Query: 78  SRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               +         S  +    T     ARE RY   ++ AK    T ++TAH  +DQ+E
Sbjct: 66  KDFDVKFYKEELNMSDLERDSHTSEEMLARELRYQAFNKMAKLEGVTKLLTAHHKNDQVE 125

Query: 134 TVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            + MR     +    + +    +       L I RP L   + ++  +  ++N+ +  D 
Sbjct: 126 NILMRLLTGRSIDHSLAICEEIEMA----GLNIYRPLLNSLKAELEEYAKEKNLHYYVDA 181

Query: 193 SNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           +N D  + R  +R  +  +           L      +Q++   +   +      Y+   
Sbjct: 182 TNFDTDYTRNNIRHNIVPLLNDINSGSFDNLINFANYYQNINNNLKKTILSKKDNYIFSR 241

Query: 246 MRSIIAISQD-ILNIDSTLLFYLLRVSA 272
            +  I++ +D  L ++   +++LL+   
Sbjct: 242 DKDKISLVKDKFLELNEEEMYFLLKDLI 269


>gi|227486467|ref|ZP_03916783.1| tRNA(Ile)-lysidine synthase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235648|gb|EEI85663.1| tRNA(Ile)-lysidine synthase [Anaerococcus lactolyticus ATCC 51172]
          Length = 454

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/342 (20%), Positives = 131/342 (38%), Gaps = 26/342 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ++V  SGG DS  L+  L  +   ++   I      ++H  R+ A  +   V  
Sbjct: 17  LSEGDTVIVGASGGPDSQFLIHILDKL---KNKLGIDIVLAHLNHLHRKEASKDEDLVRQ 73

Query: 76  VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +L +     S        + +     A R  RY   ++ +K    + I  AH  DDQ
Sbjct: 74  TAEKLGLKFYSRSRSMDELAKELKISSEDAGRRLRYEFFNDLSKKFPISKIAVAHNKDDQ 133

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET  MR  R     G+         +   N  I RP L  ++++I ++L    I++  D
Sbjct: 134 AETALMRIIRGTGLDGL-------RAMDYKNGNIIRPILNIKKKEILAYLDSNEIAYAID 186

Query: 192 PSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            +N ++ + R ++R         +    + A++      +D    +  +V     +   V
Sbjct: 187 HTNFENDYTRNKIRLDIIPILEEINPNVVDAVFKLSDLARDDLAILEKSVDSKFDEMSKV 246

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
               I          D  LL  +LR +  +  G+I      +++   L +K+   G   I
Sbjct: 247 KHGKIYFDKDHFEKTDPALLRRILRKAVGVLKGEIKDLSKENLDD-FLKIKNLATGKSLI 305

Query: 305 GRVVIDRRANFLW----ITRAVRNLPTLILYPEETTVWDGRY 342
              +  R++   +    +T A ++   L LY ++   +DG Y
Sbjct: 306 KDDISLRKSYEAYVLEILTPAEKSKTDLYLYDKDQVHFDGIY 347


>gi|269121223|ref|YP_003309400.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386]
 gi|268615101|gb|ACZ09469.1| tRNA(Ile)-lysidine synthetase [Sebaldella termitidis ATCC 33386]
          Length = 442

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 14/221 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +L+A SGG DS+ L   ++     R    ++   + V+H LRE A +++++V +
Sbjct: 20  LKKNDKVLIAFSGGPDSVFLFHCINFF---RESLGLELELVYVNHKLREDADEDIKFVKE 76

Query: 76  VCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +  + + +    V     + +     A RE RY +  +  K  N   I T H  DD 
Sbjct: 77  FAEKYEVRYHIREADVKETAVREKISEEEAGREERYRIFFDIMKENNIDKIATGHNLDDN 136

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET   R  R  A  G+         +      I RP L  R++ I   L   +  +  D
Sbjct: 137 IETFIFRLLRGTALNGL-------KGIPVKRGAIIRPILEFRKDYILEVLDGADEEYRLD 189

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            +N + ++ R ++R  +  +      L  +K   L  ++NN
Sbjct: 190 STNFETKYTRNKIRNLIFPLFSEVNPLFREKIAGLIEEINN 230


>gi|254491662|ref|ZP_05104841.1| hypothetical protein MDMS009_1997 [Methylophaga thiooxidans DMS010]
 gi|224463140|gb|EEF79410.1| hypothetical protein MDMS009_1997 [Methylophaga thiooxydans DMS010]
          Length = 441

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 133/356 (37%), Gaps = 26/356 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  +P + +   ++ LV    + +A SGG DS  LL  L    + +        AI VDH
Sbjct: 1   MAFNPQQIIVDLIK-LVAGRPVCIAYSGGVDSHVLLHLLA---NTQHPQLTSIRAIYVDH 56

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119
            L   +     + + V   + I    ++         GL AAAR+ARY   S        
Sbjct: 57  GLHAESDKWRDHCASVSKSIDIKFESLTVTVENIDNLGLEAAARQARYQAFSSALFEN-- 114

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            +++TA    DQ ET+ ++  R     G+   G   T+     + I RP L   + DI  
Sbjct: 115 EVLVTAQHQQDQAETLMLQLLRGSGPSGLSAMGRESTM---KGMTILRPLLGLSKADILD 171

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +     +SW EDPSN D    R  +R  V   +L + +  + K             +L+ 
Sbjct: 172 YAQLHQLSWIEDPSNADLTLNRNYLRHQVFP-NLESRWPAVAKTMSRTADHCREATVLLQ 230

Query: 240 KYLTVHMRSIIAISQDILNI------DSTLLFYLLRVSAAICGGQISLPGYRSMERVML- 292
           +   +  + +     +IL+I             LLR S   C   ++LP    ++RV+  
Sbjct: 231 ELAQLDAQRVCIEPPNILSISALTGLSEPRQRNLLRFSIEQC--DLNLPSTVVLQRVIDE 288

Query: 293 --FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY----PEETTVWDGRY 342
                  K   V      I R  + L I         L         E  + DGR+
Sbjct: 289 VCSAAEDKSPHVHWPGAEIRRYRDQLIIQAVKTTNTELTEQHIEGASELELTDGRW 344


>gi|288574816|ref|ZP_06393173.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570557|gb|EFC92114.1| tRNA(Ile)-lysidine synthetase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 455

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 134/345 (38%), Gaps = 41/345 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78
             I VAVSGGSDSM LL  + +   +        S I V+H +R +++K +  +V + C 
Sbjct: 25  KRIAVAVSGGSDSMALLWLMLNCWPN------DISVIHVEHGIRGDSSKADACFVKEHCK 78

Query: 79  RLRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +L I   ++S            L  AAR  R+  ++  A+ I +  +   H  DD +ET 
Sbjct: 79  KLDIPCFILSRDVPVEAMKGESLEQAARRIRHEALASKAEEIGSDFVALGHNSDDTVETF 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++   R     G+         + ++     RP L   R+++R  L +    W ED SN 
Sbjct: 139 FLNLARGSGAYGLA-------GIPEVRDRFVRPVLEVSRDELRELLKEVGWGWVEDESNQ 191

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAVAMLIPKYLTVHMR 247
           +D + R R+R  V  +  + +   +++          DLR +       L     +    
Sbjct: 192 EDLYLRNRIRHEVLPLLENRINRGVRRHVLSLIEEMSDLRKEEERTAFDLARSLFSFMPW 251

Query: 248 SIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
           S+ ++ +  ++++      +L R      G  +        E +   L+   R       
Sbjct: 252 SLYSLDRSGVMDLSKRHRIWLFRHVGRELG--LRTLSRHRTEILSDLLERSSRWRFQWSE 309

Query: 307 VV--IDRRANFLWITRAV---RNLPTLILYP--------EETTVW 338
            V     + + +W+T+        PT+ L P         E   W
Sbjct: 310 DVELCCCKDHLIWLTKESLEESPSPTIFLSPPRGESEWSGEEITW 354


>gi|160902337|ref|YP_001567918.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95]
 gi|189035968|sp|A9BJK2|TILS_PETMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|160359981|gb|ABX31595.1| tRNA(Ile)-lysidine synthetase [Petrotoga mobilis SJ95]
          Length = 311

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/327 (22%), Positives = 133/327 (40%), Gaps = 27/327 (8%)

Query: 1   MFLSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           M L   E  +  F+R          IL+ VSGG DSM LL  +  +     F   + S  
Sbjct: 1   MILQDFEKKIFKFIRDYKIFNKYDKILLGVSGGKDSMSLLHVMSKLSKTMGF---EISVA 57

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISE 112
            ++HC+RE A ++  +V   C +L+I              K + G+  A R+ RY    E
Sbjct: 58  HLNHCMREEADNDEAFVRQACWKLKIPFFSKKVDVFTYSKKNKVGVEVAGRKLRYEFFYE 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             + ++   I TAH  DD  ET+  R  R     G+G     +         I++P L  
Sbjct: 118 TLRRLSYNKIATAHHMDDLFETMIYRILRGTGIYGLGGLIPIEE-------EITKPMLCV 170

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
             E+I++++   NI + ED  N    + R ++R  +  +         + F  L   + +
Sbjct: 171 DLEEIKNYVTINNIEYVEDKYNYSLDYARNKIRYEITPLFKKINPRYKESFFRLAKIIWS 230

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVM 291
               +  K+     RS I+     L +++      ++R++    G     P     E+++
Sbjct: 231 YREEVKRKF---EERSEISKDSLKLRLENDFFDGEIIRIAFLKFGK--YPPNMEETEKII 285

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWI 318
              K G R    I  + I ++++ L +
Sbjct: 286 KMRKGGVRK---INGLSITKKSDSLLV 309


>gi|61216758|sp|Q9ZGE2|TILS_HELMO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3820563|gb|AAC84036.1| cell cycle protein MesJ [Heliobacillus mobilis]
          Length = 470

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 21/314 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79
            I++A+SGG+DS+ LL+    V        I+ +A   +H +R   + ++  +V+++ +R
Sbjct: 23  RIVIALSGGADSVCLLLLFKKVSPQ---FGIELAAAHYNHGMRGKESDEDAAFVAELTNR 79

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L++   +    + W   +P T +  AAR  RY  +S  A+   A  I  AH  DD  ETV
Sbjct: 80  LQVPLFLETAPLKWWQQEPGTKME-AARRLRYDFLSRSAEQAGARWIALAHHADDMAETV 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R    KG+       + +        RP L  RR+++  FL      W  D SN 
Sbjct: 139 LFHMLRGSGIKGL-------SGIPAKRGPFVRPLLPFRRKELEEFLKAEGQHWRHDSSND 191

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
            D + R R+R  +    L      ++        +      L  +   V+    +   + 
Sbjct: 192 SDVYTRNRIRHQIMPALLSFNPKLVETLCRNADLLRADAEFLDRECELVY--GQVQQEEG 249

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCV-SIGRVVIDRR 312
           +       L   LR        +   PG    + ++  L+   G+   V  +G   +   
Sbjct: 250 LKVQALVDLPLALRRRVLRRFLEPENPGSEKTDAILEQLQKNFGRSKIVDQVGGKYLINE 309

Query: 313 ANFLWITRAVRNLP 326
              L     +  L 
Sbjct: 310 GGILRSYEELPWLE 323


>gi|313889520|ref|ZP_07823166.1| tRNA(Ile)-lysidine synthetase [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122132|gb|EFR45225.1| tRNA(Ile)-lysidine synthetase [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 427

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/295 (23%), Positives = 116/295 (39%), Gaps = 25/295 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           + F ++      +L+AVSGG DSM LL  LH+        KI  +   V+H  R+ +  E
Sbjct: 13  KAFFKN---HKKVLIAVSGGVDSMNLLHFLHTFKDQ---FKISIAIAHVNHKQRKASDLE 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             Y+    ++  I   V  +K +         AR+ RY            T ++TAH  D
Sbjct: 67  EDYLKSWANQHDIPIFVDYFKGNFS----EQRARDFRYQFFKRIMSQGGYTALVTAHHAD 122

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ+ETV+MR  R    +   L+G+ +   +     + RPFL   ++ +            
Sbjct: 123 DQVETVFMRLIRGSLLR--HLAGIKEVQPFA-GGQLIRPFLHFHKKTLP------QPFHF 173

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           ED SN    + R RVR F     L  L  +  K  +  + +    A L      +     
Sbjct: 174 EDSSNLGLDYFRNRVRNF----YLKELEKENPKLSESLLALAEESATLFAALADLTNHID 229

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
           +   +  L    ++ FYLL     +          + ++ V+  L+  + G   +
Sbjct: 230 VTDRKTFLEQTDSVQFYLL--QNYLAKFDDLFLSRKQVKEVLHILRVKEEGKFFL 282


>gi|186940996|dbj|BAG31126.1| putative cell cycle protein [Xanthomonas perforans 91-118]
          Length = 450

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 127/353 (35%), Gaps = 17/353 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  +L+A SGG DS  LL  L +    R  G   F A+ V H L   A     +    C
Sbjct: 29  PPGPVLLAYSGGMDSSVLLHLLAATPRYRHAG---FRALHVHHGLHADADAWAAHCQRTC 85

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L++   +V  + ++  +GL   A        +          +  AH  DDQ ET  +
Sbjct: 86  DTLQVPLQIVRVQVAR-DSGLGLEAAARHARHAAFAQALTAGEWLALAHHRDDQAETFLL 144

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ R    +G+             +  + RP L   R D+ ++   + + W EDPSN D 
Sbjct: 145 RALRASGPEGLAAM---RPQRPFASGTLWRPMLAHARADLLAYAHAQGLRWIEDPSNADP 201

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQ 254
           R +R  +R  V  +                    +A A+L+ + + +      +  A+  
Sbjct: 202 RHDRNFLRSQVVPLLQQRWPQAPDALARSAQLSADASALLLQQDMALLPSVRTASGALDL 261

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312
             L          L  +         LP     ++ER +    + ++ C +  +V + R 
Sbjct: 262 QALRAQPVERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQQVEVRRW 321

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
             +L++ R     P+     +    WDG         + +++      +   P
Sbjct: 322 RQYLFLHRHAAAWPS-----DWHAQWDGAAPLHLPDGAQLRLLGAPGLRFAQP 369


>gi|297620920|ref|YP_003709057.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU
           86-1044]
 gi|297376221|gb|ADI38051.1| putative tRNA(Ile)-lysidine synthase [Waddlia chondrophila WSU
           86-1044]
          Length = 438

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 128/341 (37%), Gaps = 17/341 (4%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F  R   + A +L+A SGG DSM LL  +       S   ++F    VDH  R+ + DE 
Sbjct: 11  FLKRCTPFNAPVLIACSGGPDSMALLRMMVEYRKTHS---VRFGVAHVDHRWRKESADEA 67

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             +  +C  + +   +        Q  L  A R  R     +         +M  H  DD
Sbjct: 68  ETLRALCREIDVPFHLKEIDPEAMQGNLEEACRHFRQTYFLQLCFDHGYGSVMLGHHLDD 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV  R       +  G  GM +  +Y+  +   RPFL+ R++ + ++L  RN  +  
Sbjct: 128 QAETVLKRVFEGAKLEKCG--GMQEISVYET-IPFWRPFLQVRKQKLIAWLNLRNFPYFI 184

Query: 191 DPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           DP+N D  F R ++R  +           +   +         +   +   I K+L +  
Sbjct: 185 DPTNNDSSFLRSKIRGNILPEISRYFGKEVSPGLAFLGREAHALKEFMGSHIYKWLALKE 244

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
           ++      D+   + + LF    + + +         Y + E ++         C   G 
Sbjct: 245 KTPWGTVLDLSCQNPSHLFEARCLISELLPQASREIAYSAAENLIGGA---ANKCYHAGG 301

Query: 307 VVIDRRANFLWIT-RAVRNLP---TLILYPEETTVWDGRYQ 343
             +      +++T R   +LP   T +        W+ R Q
Sbjct: 302 KTLYIDRKRMFLTERLHADLPHQETSLKKCGSIGSWNYRIQ 342


>gi|325955979|ref|YP_004286589.1| tRNA(Ile)-lysidine synthase [Lactobacillus acidophilus 30SC]
 gi|325332544|gb|ADZ06452.1| tRNA(Ile)-lysidine synthase [Lactobacillus acidophilus 30SC]
          Length = 423

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     LVA S G DSM LL  L  +       K++  A   DH LR  +K+E + + + 
Sbjct: 23  LNNKKFLVAASAGPDSMALLDMLQKM-------KVQVIAAHFDHQLRSDSKNETKILQEY 75

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C +  I      W K+ +P  G+ AAAR+ARYA +++ AK   A  ++TAH  DD LE +
Sbjct: 76  CKKYDIPLFTAVWAKDEQPAAGIEAAARDARYAFLTQIAKKEKADYLLTAHHGDDLLENI 135

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M        +     + + RP L   ++++  +  +  I +  D +N 
Sbjct: 136 LLKFIRSGNPEEMNSLQAVGVM---HGVSLLRPLLAYSKQELFEYDRKNGIEFITDSTNN 192

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           +D   R R+R  V  +        +    +   K+ N +   I + +   +  +      
Sbjct: 193 EDETMRNRLRHHVVPLLKKENPALIANALNYSKKMTN-LDEFIDQKVD-DIGQLTPFLGQ 250

Query: 256 ILNIDSTLLFYL 267
              I S  L  L
Sbjct: 251 AYRIKSEKLTAL 262


>gi|289579227|ref|YP_003477854.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter italicus Ab9]
 gi|289528940|gb|ADD03292.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter italicus Ab9]
          Length = 464

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 127/308 (41%), Gaps = 24/308 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    I +V+ + + +     I++ VSGG DS+ +L  L+++   +    +K   + V+H
Sbjct: 1   MIDKVISTVKRY-KMIKENDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R E A+ + ++V ++C +L++        V     +       A R  RY    E  K
Sbjct: 57  MIRGEEARRDAQFVENICCKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I  AH  +D +ETV++   R     G+         +  +N  I RP +   R+
Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGAGMTGL-------IGIKPVNGNIIRPLIEIERK 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK-- 229
           +I  +L ++ +    D +N +D ++R +VR     F+ +     +   + +   + ++  
Sbjct: 170 EIEIYLKEKGLKPAIDFTNYEDLYKRNKVRLKLIPFINETFEVDIIKNIYRMAKIILEEN 229

Query: 230 --VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +      +  +    +   I A  + +      +   L+R+      G I    Y  +
Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIEKLRVQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289

Query: 288 ERVMLFLK 295
           E V+  L 
Sbjct: 290 EDVLSLLD 297


>gi|315037515|ref|YP_004031083.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1112]
 gi|312275648|gb|ADQ58288.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1112]
 gi|327182811|gb|AEA31258.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylovorus GRL 1118]
          Length = 423

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     LVA S G DSM LL  L  +       K++  A   DH LR  +K+E + + + 
Sbjct: 23  LNNKKFLVAASAGPDSMALLDMLQKM-------KVQVIAAHFDHQLRSDSKNETKILQEY 75

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C +  I      W K+ +P  G+ AAAR+ARYA +++ AK   A  ++TAH  DD LE +
Sbjct: 76  CKKYDIPLFTAVWAKDEQPAAGIEAAARDARYAFLTQIAKKEKADYLLTAHHGDDLLENI 135

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M        +     + + RP L   ++++  +  +  I +  D +N 
Sbjct: 136 LLKFIRSGNPEEMNSLQAVGVM---HGVSLLRPLLAYSKQELFEYDRKNGIEFITDSTNN 192

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           +D   R R+R  V  +        +    +   K+ N +   I + +   +  +      
Sbjct: 193 EDETMRNRLRHHVVPLLKKENPALIANALNYSKKMTN-LDEFIDQKVD-DIGQLTPFLGQ 250

Query: 256 ILNIDSTLLFYL 267
              I S  L  L
Sbjct: 251 AYRIKSEKLTAL 262


>gi|146329382|ref|YP_001209278.1| tRNA(Ile)-lysidine synthetase [Dichelobacter nodosus VCS1703A]
 gi|146232852|gb|ABQ13830.1| tRNA(Ile)-lysidine synthetase [Dichelobacter nodosus VCS1703A]
          Length = 415

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 131/353 (37%), Gaps = 15/353 (4%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M ++ +E + F  ++   P   L+A SGG DS+ LL AL+   +  S        + ++H
Sbjct: 1   MNINQLE-LLFQWQTQTNPTAYLLACSGGRDSIALLHALYQQKTQLSAP---LEIVYINH 56

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
              + A      V+   +    +   VS      +    A AR+ARY   ++        
Sbjct: 57  GWHQDAAKWGELVATRAAAYGFSFRSVSLHLKATK-NAEAVARKARYQAFAQLLPVNG-- 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DDQ ET+ +   R     G+    +  +     +    RP+L   R +I  +
Sbjct: 114 VLLTAHHQDDQAETLLLNLCRGSGLDGLSAMPLRRSFAAGEH---WRPWLLHARAEIEDY 170

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L  + +++ +D SNTD R++R  +R  V  +          +      +++ A       
Sbjct: 171 LKSQQLTFVDDSSNTDTRYQRNWLRHQVLPLLETRFPAIRAQLAQTSAQLSAARHFQEHC 230

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
                       + + L+         L +   +    + LP  R ++  +  L + +  
Sbjct: 231 LYAYLPAPEQPFTMETLSA-VPSSSRALLIRYWLRQRHLPLPPRRRLQEFIDQLDNAEHA 289

Query: 301 CVSIG-RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI 352
            +    R +   R+    +       P +     E T W G       S + +
Sbjct: 290 QIEYADRCLFRYRSEIYNVATEPPAPPPIFA---EQTHWHGIGTLTLQSGAAL 339


>gi|254294754|ref|YP_003060777.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814]
 gi|254043285|gb|ACT60080.1| tRNA(Ile)-lysidine synthetase [Hirschia baltica ATCC 49814]
          Length = 473

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 22/348 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I +AVSGGSDS+GLL                  A+++DH +R  A  E  YV  +C  
Sbjct: 56  KRIGIAVSGGSDSLGLLCLSAEWAK---LNNWHLQALTIDHGMRPEAAQEAVYVQSICET 112

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L I H+ ++W+  + Q      AR AR+ L  E AK  N   +M  HT DD+LET+ +R 
Sbjct: 113 LNIPHTTMNWRCPQDQRATQENARMARHLLFCEWAKRQNIQFLMLGHTLDDRLETLLIRE 172

Query: 140 QRDYAEKGMGLSG---MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
             + +E G+                +L + RP     R+D+ + L++ +ISW  DPSN D
Sbjct: 173 SSNSSEYGLAAMPSQSCSPIWPEGRDLKLLRPANNLTRQDLSAILIETDISWVCDPSNQD 232

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIAIS 253
           D++ERVR+R+ +  +        ++K + L +K    V  L   +  ++       + + 
Sbjct: 233 DKYERVRIRKKLEAMPQQVKQKSIEKLKKLTLKRQKLVTDLTYFLKNHVVWRADGSVELR 292

Query: 254 QDILNIDSTLLF--YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS--IGRVVI 309
              L      +    L R+   + G + ++   R +  +     + K G ++  +G+  +
Sbjct: 293 LSDLFKHPLDIQNKALERILICVSGSKQNVGLSRVISLLNALNVNTKSGKITHCLGKCWL 352

Query: 310 DRRANFLWI---------TRAVRNLPTLILYPEETTVWDGRYQFQNLS 348
            +  + L I         T+        ++   +   + GR+  +   
Sbjct: 353 IKTEDTLQIYAMPTKRATTKNSPQTTRSVIKSSQKICYMGRFDIRLSP 400


>gi|167032176|ref|YP_001667407.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida GB-1]
 gi|166858664|gb|ABY97071.1| tRNA(Ile)-lysidine synthetase [Pseudomonas putida GB-1]
          Length = 427

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 136/398 (34%), Gaps = 41/398 (10%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS  LL  L      R+       AI V H L+  A     +   +C  L I 
Sbjct: 15  IAYSGGLDSTVLLHLLADYA--RNHASPPLRAIHVHHGLQTAADAWPAHCQAICDNLGIE 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  + S P   +  AAR+ARYA   +        ++ T    DDQ ET+  R  R  
Sbjct: 73  LQVIHVQVS-PGASVEQAARDARYAAFKQTL--GPGDILFTGQHRDDQAETLLFRLLRGA 129

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       ++RP L C R+ ++ +     ++W EDPSNTD  F R  
Sbjct: 130 GLRGLAAMPGQRAL---GQGSLARPLLGCARQQLQDYASAHRLAWIEDPSNTDTHFARNY 186

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V            +        +  A+ +L         R+          + S  
Sbjct: 187 LRGEVFPRLQQRWPQASQNLARAAEHLGEALGLLDELAQADLARAQEGAPAAWSALPSLG 246

Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  L  +S +            +  LP  R       +    +  +   S+    + R  
Sbjct: 247 LAALATLSPSRQRNALQYWLSQRTRLPDTRHWAGWADLRDAGADAQPVWSLADGRLLRSQ 306

Query: 314 NFLWITR-----------AVRNLPTLILYPEETTV-------WDGRYQFQNLSDSLIQIG 355
             +W              A  +    +L P   +V        DG      L   +++I 
Sbjct: 307 GRVWWLSGDWLKTPIGQLAWADPDEPLLLPGNGSVRLVGAGQLDGLRIAYRLGGEMLEIP 366

Query: 356 PQSYR--KADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
            +  R  K  +     P   +   S +P    G+ LLA
Sbjct: 367 GRGRRDLKRLLNEQQVPHFLR---SRLPLLYRGERLLA 401


>gi|82750216|ref|YP_415957.1| hypothetical protein SAB0458 [Staphylococcus aureus RF122]
 gi|82655747|emb|CAI80146.1| conserved hypothetical protein [Staphylococcus aureus RF122]
          Length = 431

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 19/252 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  GHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S-IIAISQDILN 258
           S  + +S+   N
Sbjct: 244 SKYLEVSRQAFN 255


>gi|317056314|ref|YP_004104781.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7]
 gi|315448583|gb|ADU22147.1| tRNA(Ile)-lysidine synthetase [Ruminococcus albus 7]
          Length = 444

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 134/401 (33%), Gaps = 48/401 (11%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M     + VR  +           +L+ +SGG+DS  LL+ LH +            A  
Sbjct: 1   MKSDLSDRVRRTIEKYHMAEKGERLLIGLSGGADSAALLLCLHEL-------GYDICACH 53

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112
           V+HC+R E A  +  +  ++C  L I  +V                   AR  RY  +  
Sbjct: 54  VNHCIRGEEADRDQHFCEELCKGLNIDITVKVVDVPAYCRANPVSEEEGARLLRYKAL-- 111

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             + INA  I TAH  DD LET      R    KG+         +  +   I RP + C
Sbjct: 112 --QEINADKICTAHNLDDCLETTLFNLARGSGLKGIA-------SIPPVRENIIRPLIEC 162

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ-------D 225
            R DI ++L ++  S+  D +N  D + R ++R  V  +        M  F        +
Sbjct: 163 SRADIEAYLFEKGQSFVTDSTNLLDEYSRNKLRHKVVPVMREINPSLMDTFANTLGFLRE 222

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
               +         + +     S   I +    I   ++  +L                 
Sbjct: 223 DSRFLEKMSDDAFAEAVYNDGFSCKMIRKLDYPIRRRVIMRILAKYDVEV-------SQD 275

Query: 286 SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGR 341
            +E +   + +G +  V         +++ L+I     +L       +   E    W GR
Sbjct: 276 KIEMIEHLICNGGKISVK-SNCFAYTKSDTLYIYSENSDLKICSDDQVKVSEGVIYWQGR 334

Query: 342 ---YQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSS 379
              ++   +      +  +          I  +I  R   +
Sbjct: 335 NIEFRIIEIDGKFENVNKKFANSCLDYDKIKGVIVLRKRRA 375


>gi|332363617|gb|EGJ41398.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1059]
          Length = 425

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 133/348 (38%), Gaps = 30/348 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +L+AVSGG DSM LL  L     +     I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLLIDSQKEL---DIELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  ++ E + +  +  +L +     S+  +        AAR+ RY    +  +  + T 
Sbjct: 59  QRPESEQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     I   Q        +  +LL+       G       +  E V+  L++     
Sbjct: 222 SHLTRDLDIKNVQVFHQQIPQIQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279

Query: 302 VSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345
            ++     +V D +   +  I+R        IL   E  +  G Y+F 
Sbjct: 280 HTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327


>gi|306834613|ref|ZP_07467725.1| tRNA(Ile)-lysidine synthetase [Streptococcus bovis ATCC 700338]
 gi|304423249|gb|EFM26403.1| tRNA(Ile)-lysidine synthetase [Streptococcus bovis ATCC 700338]
          Length = 421

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 104/262 (39%), Gaps = 24/262 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I+   +F +       +L+AVSGG DSM LL  L+     R   +I+     ++H  R+ 
Sbjct: 9   IQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIY---RDKLEIEIGIAHINHKQRQE 61

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++ E  Y+ +   + +I   V  +           AAR+ RY    +     N T ++TA
Sbjct: 62  SEMEEAYLCEWAEKHQIPIYVDYFSGIFS----EKAARDFRYQFFKKIMVEKNYTAVVTA 117

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ ET++MR  R    +   LSGM     +     + RPFL   ++++        
Sbjct: 118 HHADDQAETIFMRFLRGSRLR--HLSGMQGVSSF-CTGELIRPFLTISKKNLPE------ 168

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I   ED SN    + R R+R       L +L  +  KF+     +      L      + 
Sbjct: 169 IFHFEDDSNQSLDYLRNRIRNQ----YLPSLEKENPKFRQALQHLGQESQQLFQAIQDLT 224

Query: 246 MRSIIAISQDILNIDSTLLFYL 267
               +      L   + +   L
Sbjct: 225 AEIDVTDCSQFLAQTTAVQAVL 246


>gi|167627656|ref|YP_001678156.1| tRNA(Ile)-lysidine synthase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189035967|sp|B0TYH9|TILS_FRAP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|167597657|gb|ABZ87655.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 400

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 53/281 (18%), Positives = 107/281 (38%), Gaps = 15/281 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L   + +   +     P+HI++  SGG DS  LL     +        I   AI ++H
Sbjct: 1   MSLDKTQIISQILNH--SPSHIIIGYSGGVDSSVLLDITKDL-------DIPTIAIYINH 51

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +   A     +   +C+   I     S   +       A A + R     E     ++ 
Sbjct: 52  NIHPDALKWQLHCQTICNNANIDFIAHSLDQAPKGESFEAWASKQRMDFFIEIMSQYSSP 111

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++  H  DDQ ET  +++ R     G+        + +     + RP L   ++DI+ +
Sbjct: 112 ILLLGHHLDDQAETFLIQAIRGSGLAGLASMPYYKQLNHGA---VLRPLLDYTKKDIQDY 168

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAML 237
             Q  I+   D SN + ++ R  +R  +  I       +   + +   +  + +N +  L
Sbjct: 169 ASQNKINHIYDDSNENIKYRRNLIRNQIMPILEQINPNISRTLSRSAKICAESSNILQKL 228

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
           + + L    ++   I  ++L++D  +   L+         Q
Sbjct: 229 LNEKLQKISQNNSLIISELLSLDKDIQKSLIHHWFKETTNQ 269


>gi|313123084|ref|YP_004033343.1| tRNA(ile)-lysidine synthetase, mesj [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279647|gb|ADQ60366.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 431

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 121/320 (37%), Gaps = 14/320 (4%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L    + LVA SGG DSM LL  +  +      G  +  A  +DH LR  ++ E 
Sbjct: 11  FAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDHQLRADSQKES 65

Query: 71  RYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + +   C + ++      W K+  P++GL AAAR+ RY  + E A+ + A  ++TAH  D
Sbjct: 66  QLLRAYCHKYQLPLYEGVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LE + ++  R    +          +     + + RP L   + D+ ++  ++ + + 
Sbjct: 126 DLLENILLKLVRSGIPRE---MNSLKPVSQRGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           ED +N      R R+R+ V  +        ++       ++             +     
Sbjct: 183 EDETNFTGITARNRLRQEVVPLLKKESPDLLENAWRFSQEMTAEEDYFAQAAGKLPEPEP 242

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
                 I          L++        +        ++R++L  +  +      G + +
Sbjct: 243 FFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQEK----GGLHL 297

Query: 310 DRRANFLWITRAVRNLPTLI 329
                  W+    +  P+ +
Sbjct: 298 SFYQGHYWLYPVKQPAPSPL 317


>gi|325179733|emb|CCA14136.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 806

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 136/341 (39%), Gaps = 26/341 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
             LV    + VA+SGG+DS+ L + L   L +         AI+VDH LR  +++E  YV
Sbjct: 115 HKLVGQYPLAVALSGGADSLTLTLLLDEYLRECEQKAASLLAITVDHQLRAESREEAEYV 174

Query: 74  SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
             +C    IAH + S                 ++ +   AR+ RY+ +    + ++   +
Sbjct: 175 HKICEERGIAHVIASNDWSAFDSAQLVDGKPKKSQIQVQARKYRYSSLEHKCRKVSVKYL 234

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFLRCRREDIR 178
              HT DDQ ET+  R  R     G+          +      ++++ RP L   +  ++
Sbjct: 235 FVGHTLDDQEETILYRLARGSGVNGLAGMDPITKWFWNEEMGEHIYLIRPLLSVPKSRLQ 294

Query: 179 SFLLQR-NISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKV 230
              +QR +  W EDPSN  D F+RVR+R+ +  I          +L    +   + +   
Sbjct: 295 QTCMQRFHQDWIEDPSNHSDTFDRVRIRKVMAMIRGDSGEGAFDSLLPLQQIATEAKKNF 354

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                  + K++T    S + +     +    L++ +L       G +   P + S+ +V
Sbjct: 355 RKLENKALEKHITEWSPSRVTLDVAFQDGYEELIYRVLIRILCYVGKKEHPPRHSSVSKV 414

Query: 291 MLFLKSGK-RGCVSIGRVVIDR--RANFLWITRAVRNLPTL 328
           +  L        ++I   V+ +  +   L      R   + 
Sbjct: 415 LHDLDQLTCGKQITIHGCVVKKVEKGRLLCFQPEHRRTESF 455


>gi|302390905|ref|YP_003826725.1| tRNA(Ile)-lysidine synthetase [Acetohalobium arabaticum DSM 5501]
 gi|302202982|gb|ADL11660.1| tRNA(Ile)-lysidine synthetase [Acetohalobium arabaticum DSM 5501]
          Length = 466

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 127/325 (39%), Gaps = 26/325 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     ++V+VSGG DS+ LL  L  +  D     +K     +DH  R E ++ +  YV+
Sbjct: 15  LSEGDKVIVSVSGGPDSLALLHILWRLQDD---YNLKLHVFHLDHMFRGEESQKDAEYVA 71

Query: 75  DVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
              ++L I  ++  +       +      AAAR+ RY L +E A ++ A  I      DD
Sbjct: 72  QFANKLSIPATIEEYDIPAYIEETGLSNQAAARKIRYELCTELADSLKADKIAIGQQADD 131

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV M   R     G  LSG+        N    RP L   R+DI  +  Q  +    
Sbjct: 132 QAETVLMNFLRGAGLDG--LSGIEPIR----NGIFIRPLLEVWRKDIGDYCKQHELEPRI 185

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAVAMLIPK-----Y 241
           D SN    + R +VR  +           +K    +  ++    N+ +     +      
Sbjct: 186 DSSNLKPVYLRNKVRLELVPYLAEEFNSSIKENLVRMAEIFRVENSFMEKYTAEKYDQLV 245

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG- 300
           +  + + +I   + I ++D  +   + R +     G       + +++++    +G+ G 
Sbjct: 246 IESNTQELILDLEGIKDLDLAIQRRIFRQALLDFCGTKRDYYTKHIQQMVELSINGETGN 305

Query: 301 --CVSIGRVVIDRRANFLWITRAVR 323
              +  G  +        +  RA +
Sbjct: 306 LLQLPQGLRLKRSYNRLKFYWRADK 330


>gi|309803800|ref|ZP_07697886.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d]
 gi|308164209|gb|EFO66470.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 11V1-d]
          Length = 418

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I++A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  
Sbjct: 3   LADKKIILAISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKY 59

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C + ++      W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + 
Sbjct: 60  CQQYKLQLEETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENIL 119

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R    + M  + +     +  N  + RP L   +E++  +  +R +++  D +N +
Sbjct: 120 IKLLRSGNVQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYIVDYTNQE 177

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +   R R+R FV      D   L     +F      + +   +L  K
Sbjct: 178 NETLRNRLRHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEK 224


>gi|253700218|ref|YP_003021407.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M21]
 gi|251775068|gb|ACT17649.1| tRNA(Ile)-lysidine synthetase [Geobacter sp. M21]
          Length = 457

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 142/400 (35%), Gaps = 39/400 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             + +  VR   ++L  P   ++VAVSGG+DS+ LL  +  +        +      ++H
Sbjct: 1   MKTLVTKVRN--QNLFRPGETVVVAVSGGADSVALLDLMTRL-----ECGLHLVVAHLNH 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAK 115
           CLR   +  +  +V+ +     +     S   +    + +  L  A R ARY  + + A 
Sbjct: 54  CLRGAESDADEAFVASLAGNYHLPFVSQSCDVADLARRERLSLEDAGRRARYGFLEQTAA 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A+ I  AH  DDQ ETV +R  R     G GL+ M  T        + RP L+  R 
Sbjct: 114 QFGASSIALAHHQDDQAETVLIRLLRGSG--GTGLAAMAGTS----GERLKRPLLQVSRA 167

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            +  +L QR +++  D +N D    R  +R  +  +         ++       +     
Sbjct: 168 KLEQYLKQRGLTFRTDSTNADTAILRNSIRHELIPLLRRYNPKVSERLAATAEILAGDEE 227

Query: 236 ML------IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI-CGGQISLPGYRSME 288
           +L        + L V     +    + L  +   L   L   A     G +   G   +E
Sbjct: 228 LLDGLTKAAYQRLAVAEGGQVRFEVEPLMKEPRALRLRLYRRALTELRGDLMRIGLAHLE 287

Query: 289 RVMLFLKSGKRG--CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346
            + L   S +        G   + R    + + RA    P+     E+     GRY    
Sbjct: 288 AIDLLAASTRPNAEATLPGACRVSRCYGVISLGRAAPQAPS---SWEQVVTGVGRYPLPG 344

Query: 347 LSDSLIQIGPQS--------YRKADVPSGIPPIIAQRALS 378
               ++Q  P+         +     P  +P     R   
Sbjct: 345 GGVFVVQRLPRPESLDTGSRWSAFLSPEAVPFPWLLRGFR 384


>gi|313113474|ref|ZP_07799063.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624201|gb|EFQ07567.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 485

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 79/332 (23%), Positives = 123/332 (37%), Gaps = 27/332 (8%)

Query: 4   SPIESVRFFV--RSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
             +  VR FV    L+ P    H+  AVSGG+DSM LL  L ++  +  F     SA  V
Sbjct: 5   KILAHVRMFVLREKLLCPGEPLHLAAAVSGGADSMALLRILLALQPEFGFV---LSACHV 61

Query: 59  DHCLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL------MAAAREARYALIS 111
           +H LR   A  +  +V   C+RL +   V        + GL         AR  RYA  +
Sbjct: 62  NHGLRGETADRDEAFVRAECARLGVPLRVFHAAEMADEVGLPPEHAGEDWARRLRYACFA 121

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
                     + TAHT +DQ ET+ +R  R     G          +        RP L 
Sbjct: 122 RLCGE-GIDDVATAHTANDQAETLLLRLARGTGLHGAA-------GIRPKRGCYLRPLLA 173

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             R+D  SF      +W  D +N  D + R RVRR             ++       K  
Sbjct: 174 LTRQDTESFCRAAGQAWVTDETNATDAYARNRVRRAALPALQSTNGAAVENLARFCEKAA 233

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
            A A    K   +   + +  +Q  +        + L   +A      +L    +M  + 
Sbjct: 234 RADAYFARKAEELLSAARLDAAQAAIKSPEACTVWRLDPLSA----ADALILEAAMHSLT 289

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323
             ++  +   V +   ++ R +  + +T  VR
Sbjct: 290 APVRDAEEKYVQLLCGLVRRGSGAVQLTDRVR 321


>gi|197119017|ref|YP_002139444.1| tRNA(Ile) lysidine-34 synthase [Geobacter bemidjiensis Bem]
 gi|197088377|gb|ACH39648.1| tRNA(Ile) lysidine-34 synthase, putative [Geobacter bemidjiensis
           Bem]
          Length = 457

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 127/342 (37%), Gaps = 28/342 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             + +  VR   ++L  P   ++VAVSGG+DS+ LL  +  +        ++     ++H
Sbjct: 1   MKTLVTKVRN--QNLFQPGETVVVAVSGGADSVALLDIMTRL-----ECGLRLVVAHLNH 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAK 115
           CLR   +  +  +V+ +     +     S   +    + +  L  A R ARYA + + A+
Sbjct: 54  CLRGAESDADQAFVASLADNYHLPFVSQSCDVADLARRERLSLEDAGRRARYAFLEQTAE 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  I  AH  DDQ ETV +R  R     G GLS M  T        + RP L+  R 
Sbjct: 114 QYGAFSIALAHHQDDQAETVLIRLLRGSG--GTGLSAMAGTA----GDKLKRPLLQVSRV 167

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            +  +L QR +S+  D +N D    R  +R  +  +         ++       +     
Sbjct: 168 KLEQYLKQRELSYRTDSTNADTAILRNSIRHELIPLLRRYNPKVSERLAATAEILAGDEE 227

Query: 236 ML------IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI-CGGQISLPGYRSME 288
           +L        + L       +    + L  +   L   L   A     G +   G   +E
Sbjct: 228 LLEGLTQAAYQRLASAEGGQVRFQVEPLMKEPRALRLRLYRRALTELRGDLMRIGLAHLE 287

Query: 289 RVMLFLKSGKRG--CVSIGRVVIDRRANFLWITRAVRNLPTL 328
            + L   S +        G   + R    L +  A    P L
Sbjct: 288 AIDLLAASPRPNAEATLPGACRVSRCYGSLSLGHAAAQAPPL 329


>gi|319757185|gb|ADV69127.1| ATPase [Streptococcus suis JS14]
          Length = 422

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 112/291 (38%), Gaps = 23/291 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL       FF +       +LVAVSGG DSM L   L+     +    I+     ++H 
Sbjct: 5   FLKVTLDGHFFDKH----KKVLVAVSGGLDSMNLFHLLYEC---KQVLGIELGIAHINHG 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            RE +  E +Y+  +     +   +  ++          AAR+ RY   +   +    T 
Sbjct: 58  QREESVIEEKYLRQLAEESNVPFYLSYFEGVFS----EEAARKWRYGFFATIMEKEGYTA 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LS +  T  +     + RP L  ++ D     
Sbjct: 114 LVTAHHADDQAETVFMRLIRGGRLR--HLSAIQPTQPFATG-ELIRPLLSFKKADFE--- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               +   ED SN D ++ R RVR                   +L V  NN    L    
Sbjct: 168 ---KLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIELTLNNLAVDTNNLFQALRDLT 224

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
             + +  +++  Q    + S LL   L     +   Q+S P +  +  ++ 
Sbjct: 225 QDLSVTDVMSFQQQAPAVQSYLLEEYLEKFPDL---QLSRPQFNEVLHILR 272


>gi|94986853|ref|YP_594786.1| ATPase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731102|emb|CAJ54464.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Lawsonia intracellularis PHE/MN1-00]
          Length = 341

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 97/240 (40%), Gaps = 19/240 (7%)

Query: 10  RFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           RF   +L       ++V  SGG DSM L + LH +        I      +DH LR  +K
Sbjct: 26  RFLEENLSQNIQGTVIVGCSGGVDSMALALILHCL-------GIDVVFAHMDHQLRAESK 78

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIM 123
           D+  +V    + L     +     S    K + G+   AR+ RY  + +  K   A  I 
Sbjct: 79  DDANHVKSFAAALDRRCIISRVDISGLAIKYKKGIEETARQERYCFLEQVRKEYGAQWIA 138

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  +D  E + +R  R     G G  G+      D   ++ RP L  RR  + SFL  
Sbjct: 139 TGHHLNDLSEDILLRLLR-----GTGWPGLAGMKAVDKKRYLLRPLLTTRRTLLVSFLSS 193

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           +NISW ED SN D  F+R R+R  +  +       K      +   +         K +T
Sbjct: 194 QNISWVEDNSNKDITFKRNRIRHTILPLFEEE-NPKFSNVAHMLWSLAKEDEEFWDKMIT 252


>gi|34498644|ref|NP_902859.1| cell cycle protein [Chromobacterium violaceum ATCC 12472]
 gi|61216591|sp|Q7NT72|TILS_CHRVO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|34104497|gb|AAQ60855.1| cell cycle protein [Chromobacterium violaceum ATCC 12472]
          Length = 435

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 141/374 (37%), Gaps = 26/374 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS+ LL  L    + R   +I  SA+ V H L   A     +   +C  LR+ 
Sbjct: 21  VGFSGGLDSVALLSLLCEARARR--PEIGLSAVHVHHGLSPNADAWAAHCQALCDSLRVP 78

Query: 84  HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
             +      +     + AAAREARY +    A      +I  AH  DDQ ET+ ++  R 
Sbjct: 79  LRIERVHVRAGGGESVEAAAREARYQVYRRSASE----VIALAHHQDDQAETILLQLLRG 134

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +   L+ M           + RP L   RE + +++  R  +W +D SN D R+ R 
Sbjct: 135 GGAR--ALAAMPALRELAPGKLLWRPLLEIPRERLEAYVKARGFAWVDDESNLDTRYRRN 192

Query: 203 RVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            +R  +       L      + +   L+      +  +  + L             +L +
Sbjct: 193 LLRHDILPRLERALPHYRSHLARAAMLQADAAAILDEVAREDLQACRTENGLDCGSVLAL 252

Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319
            +      L       G     PG      ++ FL+  +        V+  R+   L   
Sbjct: 253 SAPRRRQTLLAWLDALGWPAPEPG-----ALLEFLRQAEYAERGASPVLRLRQGCLLRFA 307

Query: 320 RAVRNLPTLILYPEETT--VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRAL 377
             ++  P     P  +T  +W G    Q+LS+   ++    + + D  +G+P  + +   
Sbjct: 308 DTLQAWPKAQSEPPASTALLWRG-GDAQSLSEWGGELA---WERRD--AGVPAALLESGA 361

Query: 378 SSMPSKEGGKPLLA 391
              P + GG+ L A
Sbjct: 362 YLAP-RRGGEKLSA 374


>gi|323442047|gb|EGA99682.1| hypothetical protein SAO46_2006 [Staphylococcus aureus O46]
          Length = 431

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEESRFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   ++ ++L   +L
Sbjct: 244 SKYLEVSRQSFNDLPNSLKMVVL 266


>gi|323438741|gb|EGA96481.1| hypothetical protein SAO11_2434 [Staphylococcus aureus O11]
          Length = 431

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 65/263 (24%), Positives = 116/263 (44%), Gaps = 20/263 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI+VAVS G DSM LL     +L+D      K + + V+H +R  + +E R++   C 
Sbjct: 11  DDHIVVAVSTGIDSMCLLY---QLLNDYKDSYRKLTCLHVNHGVRSASIEESRFLEAYCE 67

Query: 79  RLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           R  I   +     S        +   AR  RY    E    + A +++TAH  DDQLET+
Sbjct: 68  RHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETI 127

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             R     + +  +G     D +       I RP L   +++I+ F  + +I + ED SN
Sbjct: 128 MYRIFNGKSTRNKLGF----DELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESN 183

Query: 195 TDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNN-AVAMLIPKYLTVHMR 247
            D+++ R  +R  +            +  LK+K++ D +  +   +    I +++    +
Sbjct: 184 KDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQ 243

Query: 248 S--IIAISQDILNIDSTLLFYLL 268
           S  +    Q   ++ ++L   +L
Sbjct: 244 SKYLEVSRQSFNDLPNSLKMVVL 266


>gi|308048686|ref|YP_003912252.1| tRNA(Ile)-lysidine synthetase [Ferrimonas balearica DSM 9799]
 gi|307630876|gb|ADN75178.1| tRNA(Ile)-lysidine synthetase [Ferrimonas balearica DSM 9799]
          Length = 446

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 75/317 (23%), Positives = 123/317 (38%), Gaps = 28/317 (8%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L     IL+A SGG DS  L + L       +   +    I + H L   A     + +
Sbjct: 21  HLATTGRILLAYSGGVDSELLAVCLARWAGQCASPPVSL--IHIHHGLSAYADQWAGHCA 78

Query: 75  DVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                L +   VV+ +  + P+  + A+AR+ARY      A+     L++TAH  DDQ E
Sbjct: 79  ARAKALDLPIEVVAVQLQRGPRISIEASARQARYDAFR--ARLGPNDLLLTAHHLDDQAE 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           ++ +  +R    +G+        +       + RP+L  RR +I +   Q  +   ED S
Sbjct: 137 SLLLALKRGSGPRGLSAMAAQQAL---GQGRMVRPWLGLRRAEIEAAAAQLGVEHIEDDS 193

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA-------MLIPKYLTVHM 246
           N D RF+R  +R  V    L  L  +   F    V+     A        L    L  H 
Sbjct: 194 NADTRFDRNFLRHQV----LPQLNQRWPGFSQAVVRSAALCAEQQQLCDELAEADLLTHQ 249

Query: 247 RSIIAISQDILNIDST-----LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           R   A+S   L   S      LL + LR   A+   Q+ +     + +     +   +  
Sbjct: 250 RDDGALSVTALAALSAPRRNNLLRFWLRQQGALMPSQLQMAAMAPLWQ----AREDAQPQ 305

Query: 302 VSIGRVVIDRRANFLWI 318
           +  G   + R  + L++
Sbjct: 306 LDWGEHSLRRFRDGLYL 322


>gi|114332355|ref|YP_748577.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas eutropha C91]
 gi|114309369|gb|ABI60612.1| tRNA(Ile)-lysidine synthetase [Nitrosomonas eutropha C91]
          Length = 418

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 111/292 (38%), Gaps = 18/292 (6%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL  L           +  SAI V+H +   +     +   +C  + I  S+   K S
Sbjct: 1   MVLLHLLIKFSK---LMPLDVSAIHVEHGISTYSGQWSAFCQTLCDSVAIPLSIHRLKIS 57

Query: 93  K-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
           K PQ  L A AREARY +     + I A  ++ A   DDQ+ET+ ++  R    KG+   
Sbjct: 58  KQPQESLEAVAREARYQIF----RQIQADYVLLAQHQDDQVETLLLQLLRGAGVKGLSAM 113

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
                      + + RP L   R +I  +     +SW  D SN D  ++R  +R  +  +
Sbjct: 114 PTVRLFESGKAIKLLRPLLNVPRSEIMKYAKLHGLSWVTDESNLDVSYDRNFLRHRILPL 173

Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN----IDSTLLFYL 267
            +   Y   +K      +     A L+ +   +   + + + +  L     +D      L
Sbjct: 174 -IEQRYPSYRKILSRSARHLGEAAHLLDELAKIDAENTMIVDKLSLRGLRELDLARAGNL 232

Query: 268 LRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVVIDRRANFL 316
           LR   A     + LP    +E ++  L   ++       +  + I      +
Sbjct: 233 LRYLLA--QQMVRLPSSAKLEEILRQLHNIQADTHFQFEVDALEIRCYRGLI 282


>gi|269926166|ref|YP_003322789.1| tRNA(Ile)-lysidine synthetase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789826|gb|ACZ41967.1| tRNA(Ile)-lysidine synthetase [Thermobaculum terrenum ATCC BAA-798]
          Length = 442

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 130/322 (40%), Gaps = 26/322 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG+DS+ L   L+ +   RS   I  S    DH LR  + D+   ++    +  +
Sbjct: 2   ILGLSGGADSIALFHVLYEL---RSILGINISVAHFDHRLRPESSDQASQLAKYIEQFDV 58

Query: 83  AHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
                   V+    + +  +   AR+ RY  ++  A+  NA L+  AH   DQ ET  + 
Sbjct: 59  NFYLGSADVAGAALQAKASIEDTARKYRYDFLAACARKENA-LVCVAHNQQDQAETFLLN 117

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G+      D +  + ++ + RPFL    EDIR++    ++   EDPSN    
Sbjct: 118 LARGTGLDGLCGMLPIDRVPGNPDVELVRPFLGIAHEDIRNYCRLNSLPVIEDPSNLSLD 177

Query: 199 FERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           F R ++R  V      A       + L     Q  +  +++     + ++  +    I  
Sbjct: 178 FTRNKIRHLVLPALKQANQEVVKHIALTTSILQQEKRLLDSRALDFLAQHSIIRHNFISV 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
               ++N   +L+   L+++ +   G     G R +E + L  +S     + +   +   
Sbjct: 238 ELVAVMNSPRSLIIRALKMALSQAFGSDEGFGARHLEALYLLARSKSGNSIDLPGGI--- 294

Query: 312 RANFLWITRAVRNLPTLILYPE 333
                   RA++    LI++  
Sbjct: 295 --------RAIKAPQALIVWAG 308


>gi|146317675|ref|YP_001197387.1| ATPase [Streptococcus suis 05ZYH33]
 gi|146319865|ref|YP_001199576.1| ATPase [Streptococcus suis 98HAH33]
 gi|253750936|ref|YP_003024077.1| PP-loop family protein [Streptococcus suis SC84]
 gi|253752835|ref|YP_003025975.1| PP-loop family protein [Streptococcus suis P1/7]
 gi|253754660|ref|YP_003027800.1| PP-loop family protein [Streptococcus suis BM407]
 gi|145688481|gb|ABP88987.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Streptococcus suis 05ZYH33]
 gi|145690671|gb|ABP91176.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Streptococcus suis 98HAH33]
 gi|251815225|emb|CAZ50789.1| PP-loop family protein [Streptococcus suis SC84]
 gi|251817124|emb|CAZ54845.1| PP-loop family protein [Streptococcus suis BM407]
 gi|251819080|emb|CAR44104.1| PP-loop family protein [Streptococcus suis P1/7]
 gi|292557477|gb|ADE30478.1| PP loop-containing protein [Streptococcus suis GZ1]
          Length = 422

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 112/291 (38%), Gaps = 23/291 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL       FF +       +LVAVSGG DSM L   L+     +    I+     ++H 
Sbjct: 5   FLKVTLDGHFFDKH----KKVLVAVSGGLDSMNLFHLLYEC---KQVLGIELGIAHINHG 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            RE +  E +Y+  +     +   +  ++          AAR+ RY   +   +    T 
Sbjct: 58  QREESVIEEKYLRQLAEESNVPFYLSYFEGVFS----EEAARKWRYGFFATIMEKEGYTA 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LS +  T  +     + RP L  ++ D     
Sbjct: 114 LVTAHHADDQAETVFMRLIRGGRLR--HLSAIQPTQPFATG-ELIRPLLSFKKADFE--- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               +   ED SN D ++ R RVR                   +L V  NN    L    
Sbjct: 168 ---KLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIELTLNNLAVDTNNLFQALRDLT 224

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
             + +  +++  Q    + S LL   L     +   Q+S P +  +  ++ 
Sbjct: 225 QDLSVTDVMSFQQQTPAVQSYLLEEYLEKFPDL---QLSRPQFNEVLHILR 272


>gi|328950667|ref|YP_004368002.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450991|gb|AEB11892.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM
           14884]
          Length = 528

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 127/336 (37%), Gaps = 30/336 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
              +  +  L     +L AVSGG DS+ LL  L +   D            +DH LR  +
Sbjct: 11  ARFKEALARLCPEGRLLAAVSGGGDSVALLYLLKAAGRDT-------IVAHLDHALRPDS 63

Query: 67  KDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
             +  +V  +  RL       H  V     + +  L AAARE RYA ++  A+   A  I
Sbjct: 64  AADAAFVEKLAQRLGFPLETEHVDVRALAHRKRINLEAAAREVRYAFLARVARRWKARCI 123

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAHT DD  ETV ++  R    +G+G+  +           ++RP L   R ++R++L 
Sbjct: 124 LTAHTLDDNAETVLLQILRGAG-RGLGIRPLQR--------RVARPLLEFSRAELRAYLE 174

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIP 239
            R   W EDP+N     +R  +R  V              + +F   +   + A+  L  
Sbjct: 175 ARGARWLEDPTNRSLELDRNYLRHAVLPRITARFPHALEALARFSQAQQADDWALEALSA 234

Query: 240 KYLTVHMRSIIAISQDIL--NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
           ++L    R  +   + +        L    +R      G +        +E  +     G
Sbjct: 235 RHLIPDRRWPVPAYRALPLERAPEALRRRAIRGVLEALGVRPEARLVADVEAAL-----G 289

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
            R     G VV+ R+   L+        P +     
Sbjct: 290 GRAQTLPGGVVVRRQRGTLFFIPPTVRFPKVQPPAG 325


>gi|226309708|ref|YP_002769602.1| tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC 100599]
 gi|226092656|dbj|BAH41098.1| putative tRNA(Ile)-lysidine synthetase [Brevibacillus brevis NBRC
           100599]
          Length = 475

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 126/326 (38%), Gaps = 22/326 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L+    ++V +SGG+DS  LL  L S+     + + K  A+ ++H  R E A+ +  Y  
Sbjct: 15  LLPGESVVVGISGGNDSTALLHILASLNKQYQY-QWKLHAVHLNHGFRGEEARQDALYAE 73

Query: 75  DVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++C  L +        V     K   G   A+R+ RY L  E      AT +  AH  DD
Sbjct: 74  ELCRELGVVFHLFEYDVPAYMEKTGLGGQEASRDIRYRLYREVGLAQGATKLALAHHADD 133

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           Q+ET+  R  R     G  L+GM    +  D  + + RP L   R+++  +  +  +   
Sbjct: 134 QVETILFRFVRGSRLNG--LTGMPKRRMLADCPIELVRPLLHKTRQELEGYCREHQLVPR 191

Query: 190 EDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
           ED SN   ++ R  +R  V  +          H L       QD  + +  A   L    
Sbjct: 192 EDSSNQSRKYTRNLLRLDVMPLLEKVNDKYREHILATAEAIRQDEALLMRLANEQLKKVM 251

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           +     + +  +      D  L   ++ +  +           + +E V+  L  G R  
Sbjct: 252 IEKKPEAFLMDNDKFQTCDVALQRRMITLILSYLSKHTEW-SSQHVETVLHML-GGSRPS 309

Query: 302 VSIG---RVVIDRRANFLWITRAVRN 324
             +     +V+DR    +   R  R 
Sbjct: 310 AELHLPNDLVVDRVYERITFRRRKRQ 335


>gi|330997932|ref|ZP_08321766.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT
           11841]
 gi|329569536|gb|EGG51306.1| tRNA(Ile)-lysidine synthetase [Paraprevotella xylaniphila YIT
           11841]
          Length = 450

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 73/320 (22%), Positives = 115/320 (35%), Gaps = 38/320 (11%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71
             LV P   ILVA+SGG+DS+ LL+ L               A+  +  LR E +  + +
Sbjct: 18  HQLVGPDDKILVALSGGADSVALLLVLQQ-------AGFHCEAVHCNFHLRGEESDRDEK 70

Query: 72  YVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +V D+C    I      +  +    +    +  AARE RY    E         I  AH 
Sbjct: 71  FVRDLCRSRSIRLHTKDFDTAAYARQKGISIEMAARELRYGYFEELRADWRFDKIAVAHH 130

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET+ +   R    KG+       T +   N ++ RP L   R++I  +L  +   
Sbjct: 131 RDDNVETLLLHLVRGTGLKGL-------TGMRYHNGYVIRPMLDTNRKEIERYLAGKGQP 183

Query: 188 WCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +  D +N +    R ++R       + V    L  L   ++  +D     N AV  L  +
Sbjct: 184 YVTDSTNLETEAVRNKIRLEFLPMLKTVNPSILDTLQGTIRHLEDAYTLYNMAVEDLKAR 243

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
                   I A+    +    T+LF LL                   E V   L      
Sbjct: 244 ICRNDRIDIQALK--AVPAARTVLFELL---------SAYGFNSVQAEEVFDHLDGCSGK 292

Query: 301 CVSIGRVVIDRRANFLWITR 320
                   + R    L ++R
Sbjct: 293 VYESHEWRLLRDRKTLVLSR 312


>gi|77918602|ref|YP_356417.1| cell cycle protein [Pelobacter carbinolicus DSM 2380]
 gi|77544685|gb|ABA88247.1| cell cycle protein [Pelobacter carbinolicus DSM 2380]
          Length = 458

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 122/329 (37%), Gaps = 24/329 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV +SGG+DSM LL  L  V       ++   A  +DH +R  + D+  +V+  C R  
Sbjct: 21  ILVGLSGGADSMVLLDVLLHVADSL---QLAILAAHLDHGMRPESADDAAFVARFCRRRD 77

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +  +V    V     + + GL  AAREAR   + + A+      I   H  +DQ+ET   
Sbjct: 78  VPLTVGHRDVPALARQHKQGLEEAAREARREFLQQTARVEGCRFIALGHHRNDQVETFLH 137

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+    +        +    RP L   R+DI ++L    I   ED SN D 
Sbjct: 138 RLLRGSGLSGLAGMRL-------RSGPFIRPLLSFSRQDILAYLDDHQIPHVEDASNADT 190

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-------NAVAMLIPKYLTVHMRSII 250
            F R R+R  +            +    L  ++          V   +          + 
Sbjct: 191 VFTRNRLRHELLPRLRDFNPRIEEHLARLSRRIAVEEDYWTEQVDAYLESSCEEGDDGLW 250

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVSIGRVVI 309
              Q +  +   L   +LR +     G +   G + +  +   L + +      +  V  
Sbjct: 251 LSRQGLTGLHPALRSRVLRGALLRLRGDLRGIGAKHLASLDDLLDAPRSEAEAHLPGVWA 310

Query: 310 DRRANFLWITRAVRNLPT--LILYPEETT 336
            RR   LW+  A    PT   ++ P    
Sbjct: 311 ARRYERLWLRTAPPPDPTDFAVVVPGPGV 339


>gi|317484627|ref|ZP_07943530.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6]
 gi|316924101|gb|EFV45284.1| tRNA(Ile)-lysidine synthetase [Bilophila wadsworthia 3_1_6]
          Length = 355

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 98/272 (36%), Gaps = 24/272 (8%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +V  F++    V P H++VA SGG+DS  L + L  +        +      +DH LR  
Sbjct: 35  AVGRFLKEKCGVSPHHVIVAFSGGADSTALAVILRCL-------GVSLVLAHLDHRLRPE 87

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATL 121
           + +E         RL +   V              GL  A R ARYA       +  A  
Sbjct: 88  SGEEAESARRFAERLGVPCMVRRVDVEALARSEGIGLEDAGRRARYAFFDSALLSERAEW 147

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++T H  DD  E V MR  R     G+G     D         + RP L   R ++ +FL
Sbjct: 148 VVTGHHLDDLSEDVLMRLVRGSGWPGLGGMKAVDPARR-----LLRPLLGTPRAELEAFL 202

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               + W ED SN  D F R R+R  V  +    L  +   F      +          +
Sbjct: 203 RSLGVDWIEDASNRSDAFRRNRMRNHVIPL----LKAENPSFSRSTRTLWELAREDEHYW 258

Query: 242 LTVHMRSIIAISQD--ILNIDSTLLFYLLRVS 271
             V       + ++   L +       L R +
Sbjct: 259 NEVLAPVFAQLREENGSLLLPRAAFVSLPRAA 290


>gi|332523953|ref|ZP_08400205.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315217|gb|EGJ28202.1| tRNA(Ile)-lysidine synthetase [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 427

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 122/314 (38%), Gaps = 28/314 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           + F ++      +L+AVSGG DSM LL  LH+         I  +   V+H  R+ ++ E
Sbjct: 13  KAFFKN---HKKVLIAVSGGVDSMNLLHFLHTFKRQL---DISIAIAHVNHKQRKESELE 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             Y+     +  I   +  +K +         AR+ RY          + T ++TAH  D
Sbjct: 67  EDYLKKWAEQHDIPIFIDYFKGNFS----EQRARDFRYQFFKRIMVQGDYTALVTAHHAD 122

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ+ETV+MR  R    +   L+G+ +   +     + RPFL   + D+       N    
Sbjct: 123 DQVETVFMRLIRGSLLRY--LAGIKEVQPF-SGGQLIRPFLHFHKNDLP------NPYHF 173

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           ED SN    + R RVR F     L  L  +  K  +  + +      L      +     
Sbjct: 174 EDSSNLGLDYFRNRVRNF----YLKELERENPKLSESILALAEESETLFIALADLTNHID 229

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GR 306
           +   +  L    ++ FYLL     +          + ++ V+  L++  +G   +     
Sbjct: 230 VTDRKIFLEQTDSVQFYLL--QNYLAKFDDLFLSRKQVKEVLHILRAKGQGEFFLKNNYE 287

Query: 307 VVIDRRANFLWITR 320
           +VI      +   R
Sbjct: 288 LVITSNQFHIRKIR 301


>gi|326336198|ref|ZP_08202370.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691707|gb|EGD33674.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 439

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 94/240 (39%), Gaps = 19/240 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
            ++   I++A+SGG DS+ L   L  +        I F     +  LR E ++ +  +V 
Sbjct: 15  FLWQKRIILAISGGIDSVVLAYLLKELQ-------IPFLMAHCNFQLRGEESEGDQHFVE 67

Query: 75  DVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +  +L +   V  +   +           AAR  RY    +  +      I+TAH  +D
Sbjct: 68  ALAQKLSMPLEVKRFATKEYGKTHALNTQLAARVLRYEWFEQIRQKKGYDYILTAHQAND 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ET  + + R    KG+    +        N  I RP L   RE+I +F  + NI W E
Sbjct: 128 SWETFLINTSRGTGLKGLLGVPVQ-------NNTILRPLLGFSREEILAFAKENNIIWRE 180

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN  D + R ++R  +  I        +K  +  +  +    + +  +      +  I
Sbjct: 181 DSSNNSDAYTRNKIRHHISPILSQIHPNFLKNLEKTQHILQLTYSFIEEQLEKYRKKCFI 240


>gi|299536712|ref|ZP_07050022.1| tRNA(Ile)-lysidine synthase [Lysinibacillus fusiformis ZC1]
 gi|298727826|gb|EFI68391.1| tRNA(Ile)-lysidine synthase [Lysinibacillus fusiformis ZC1]
          Length = 468

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 14/261 (5%)

Query: 8   SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63
            V+ F+     L    H+L+AVSGG DSM LL   H  +  +    I+  A+ VDH LR 
Sbjct: 6   KVKAFIEEEQLLQQGDHLLIAVSGGVDSMALL---HYFIQTQEQWNIQVEAVHVDHMLRG 62

Query: 64  ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           E + ++  +V   C    +        +    ++         R  RY    E  +  NA
Sbjct: 63  EASSEDRAFVQKYCDANSVYLHAKEIPIPTILAQENGNTQLICRRERYQFFKEVLQKTNA 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++TAH  DDQLE+V M   ++       + G+    ++     + RPFL   + +I  
Sbjct: 123 NKLVTAHHADDQLESVLMALTKNATMN--SMQGIRPQRIFG-GKSLIRPFLTVTKSEIGE 179

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +LL++ + + ED SN+ D + R R R  V  +         ++      ++      L+ 
Sbjct: 180 YLLRKGLDYREDASNSKDTYVRNRFRHHVVPLLQAENPRVTEQVTHFTKQLQEDDTFLMT 239

Query: 240 KYLTVHMRSIIAISQDILNID 260
               V  + II  +++   ++
Sbjct: 240 LAQDVFSQIIIRNNENTYRME 260


>gi|51894334|ref|YP_077025.1| cell cycle protein [Symbiobacterium thermophilum IAM 14863]
 gi|61217236|sp|Q67JG9|TILS_SYMTH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51858023|dbj|BAD42181.1| cell cycle protein [Symbiobacterium thermophilum IAM 14863]
          Length = 482

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 87/404 (21%), Positives = 153/404 (37%), Gaps = 52/404 (12%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR +V     L     ++VAVSGG DS+ L   L+ +       ++      +DH L
Sbjct: 4   LDRVREYVVRHGMLEPGDRVIVAVSGGPDSLALTHVLYRLAPA---WRLSLHLFHLDHGL 60

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTIN 118
           R E ++ +  +V+D+   L +  + V+ +  + +     L   AR  RYA ++  A  I 
Sbjct: 61  RGEASRADAAFVADLARELSLPLTTVTLRPGELEAMRGSLEDNARRRRYAEMARLAAAIG 120

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A    T H  +DQ ETV MR  R       GL+G+   +  +  L I RP L   R++I 
Sbjct: 121 AQRAATGHNRNDQAETVLMRLLRGSGS--TGLAGIP-PVRREGGLTIIRPLLGASRQEIL 177

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNAV 234
           ++     ++   D +N    FER R+R  +          A+   + +  DL  + +  +
Sbjct: 178 AYCRAHGLTPRMDATNLQGDFERNRIRLEILPALTERFGDAVVDNLAQTADLLREEDRLL 237

Query: 235 AMLIPKYLT---------VHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGY 284
           A L  +                 ++ +   +L  +   L   ++R++     G    PG 
Sbjct: 238 AELTREACARCGWRETGEATGEPVVELDGTLLVQEPLALARRIVRMAVQRVSGSAYGPGL 297

Query: 285 RSMERVM-----------LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
            ++ R +           L L  G R  V+ GR    R    L            +  P 
Sbjct: 298 SAVTRALELAGRTEGSHWLDLPQGVRLSVAYGRCRFARSHPQLGPGAEALEQVWPVAVPG 357

Query: 334 ETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRAL 377
           ET +                +G     +   PS +P  +    +
Sbjct: 358 ETAIP--------------ALGVTVAAELVPPSAMPARLPDDEM 387


>gi|332703890|ref|ZP_08423978.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554039|gb|EGJ51083.1| tRNA(Ile)-lysidine synthase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 340

 Score =  198 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 77/314 (24%), Positives = 119/314 (37%), Gaps = 23/314 (7%)

Query: 8   SVRFFVRSLV----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
            V  F+R  +        +LVA+SGG+DS  LL  L  +        I   A  VDH LR
Sbjct: 20  RVERFIRKDLGLDLKGKRLLVALSGGADSTALLYCLRYLAPRMC---ISLLAAHVDHGLR 76

Query: 64  ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
             +  +  Y  ++C+   +        VS    +   G+  A R ARY    +     NA
Sbjct: 77  PESGQDAAYCRELCAAQNVPLYEAKLDVSGLAKQSGMGIEEAGRHARYDFFQKTLVGQNA 136

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            L++TAH  +D  E   MR  R     G G   +     YD    + RP L     ++R 
Sbjct: 137 DLLLTAHHLNDLAEDALMRLIR-----GTGWPELAGMPAYDPQRNLLRPLLLTPGTNLRE 191

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           FL     SW EDPSNTD  F R RVR  +  + L      ++    L           + 
Sbjct: 192 FLTNIGASWREDPSNTDPAFLRNRVRLDILPLFLRENPNFLESMARLWRIAELDRQFFLE 251

Query: 240 KYLTVHM------RSIIAISQDILNIDSTLLFYLLRVSA-AICGGQISLPGYRSMERVML 292
               + +      +        +L +   +   + +    A+  GQ+       ++  +L
Sbjct: 252 FKTKLDISYDAGGKQFSVPLDALLALHPAIRLRIYKTLLDALASGQVLWKNLLRLDEAVL 311

Query: 293 FLKSGKRGCVSIGR 306
             +SG R     G+
Sbjct: 312 ARRSGSRVQFPGGK 325


>gi|21243487|ref|NP_643069.1| cell cycle protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|61217385|sp|Q8PIY5|TILS_XANAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|21109046|gb|AAM37605.1| cell cycle protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 440

 Score =  198 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 128/353 (36%), Gaps = 17/353 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  +L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    C
Sbjct: 19  PPGPVLLAYSGGMDSSVLLHLLAARPRYRHAG---LRALHVHHGLHADADAWAAHCQRTC 75

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L++   +V  + ++  +GL   A        +     I    +  AH  DDQ ET  +
Sbjct: 76  DALQVPLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLL 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ R    +G+             +  + RP L   R D+ ++     + W +DPSNTD 
Sbjct: 135 RALRASGPEGLAAM---RPQRPFASGTLWRPMLAHARADLLAYAHAHRLRWIDDPSNTDP 191

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQ 254
           R +R  +R  V  +                    +A A+L+ + + +      +  A+  
Sbjct: 192 RHDRNFLRSQVLPLLQQRWPQATDALARSAQLSADASALLLQQDMALLPGVLTASGALDL 251

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312
             L   S      L  +         LP +   ++E+ +    + +  C +  +V + R 
Sbjct: 252 QALRAQSVERRARLLRAWVSAAHAPPLPAHGVAALEQEIDNHAADRHACFAWQQVEVRRW 311

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              L++ R     P+     +    WDG    Q    + +++      +   P
Sbjct: 312 RQCLFLHRPAAAWPS-----DWHAQWDGAAPLQLPDGAQLRLLGAPGLRFAQP 359


>gi|154499603|ref|ZP_02037641.1| hypothetical protein BACCAP_03259 [Bacteroides capillosus ATCC
           29799]
 gi|150271681|gb|EDM98925.1| hypothetical protein BACCAP_03259 [Bacteroides capillosus ATCC
           29799]
          Length = 458

 Score =  198 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 91/424 (21%), Positives = 156/424 (36%), Gaps = 62/424 (14%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     +L AVSGG+DS+     LH +   R        A   +HCLR E +  +  +V 
Sbjct: 15  LPRGGTVLCAVSGGADSV---YLLHRLWLLRDILGFNLIAAHYNHCLRGEESDRDEAFVR 71

Query: 75  DVCSRL----------------RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHA 114
           D  ++                  +   V    V+ +  +   GL   AR+ RYA + + A
Sbjct: 72  DFVAKWCGPQRFDGPEGEHTLPAVELVVGRGDVAAEAERQGRGLEETARDMRYAFLRDTA 131

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    I TAHT DD  ET+ +   R     G GL GM        +  + RP L   R
Sbjct: 132 QRLGCDRIATAHTADDNAETLLLHLIR-----GTGLQGMAGIAPRRGD--LVRPMLTTTR 184

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN--- 231
            ++  +L   +I   ED SN+D RF R R+RR V  +        +++  D    +    
Sbjct: 185 REVEEYLELYSIPHVEDSSNSDQRFTRNRIRRQVVPLLEELNPGFVRRMTDTTRYLRADN 244

Query: 232 ---NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
              NA A  +  +       ++  +  + +  + +     R    + G   +      +E
Sbjct: 245 DYLNAQAAQVCAHARWAEDDLVIEAHYLADAPTAIAPRAARRLLEMMGDGDTDCSAAHLE 304

Query: 289 RVMLFLKSGKRGCVSI---GRVVIDRRANFLWITRAVRNLPTLILYP----------EET 335
            ++   +      V+    GR+        L  T+     P   + P          + T
Sbjct: 305 AIVNLCRGDDPSAVAFLPGGRLAQRVYGELLLTTQDDPRPPFEPVTPVRGENPIPGTDWT 364

Query: 336 TV-----WDG-RYQFQNLSDSLIQIG--PQSYRKADVPSGIPPIIAQRALSSMPSKEGGK 387
            V     W G   + +   D L + G   ++ +K  +   IP    +R    +P    G 
Sbjct: 365 LVLEEEPWPGLTVRPRQQGDELTRPGRRSRTVKKLMIDEKIPRRDRER----IPVAADGD 420

Query: 388 PLLA 391
            ++A
Sbjct: 421 GVIA 424


>gi|320536077|ref|ZP_08036134.1| tRNA(Ile)-lysidine synthetase [Treponema phagedenis F0421]
 gi|320147077|gb|EFW38636.1| tRNA(Ile)-lysidine synthetase [Treponema phagedenis F0421]
          Length = 452

 Score =  198 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 83/353 (23%), Positives = 153/353 (43%), Gaps = 41/353 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M  S +++V   + S++       +L+AVSGG+DS+ LL ALH++ +D +    +   ++
Sbjct: 1   MADSLLDAVLQNLSSILKVKKTYRLLIAVSGGADSLALLTALHTINTDFNH---RLFVVT 57

Query: 58  VDHCLRE--TAKDEVRYVSDVCSRLR--IAHSV-------VSWKNSKPQTGLMAAAREAR 106
           V+H +RE    K +  +VS  C+ L+  +   V       V    S  +TG   AAR  R
Sbjct: 58  VNHNIREKNETKADADFVSSFCAHLQPPVPCIVKTIPAGSVKELASIRKTGTEDAARILR 117

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           Y    E A  ++A  I+TAH  +D  ET+ MR  +  + K +    +       +     
Sbjct: 118 YRAFEEAAIEVSADFILTAHNKNDMYETILMRLFQGGSPKSIAGIPL-------VRGKYL 170

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           RP L   R  I +FL QRNI W ED +N +  + R ++R  +  + LH++++  +   D 
Sbjct: 171 RPLLTVERASIEAFLRQRNIFWREDKTNFEQVYLRNKIRHTLIPV-LHSVFVGWQSGLDT 229

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILN------------IDSTLLFYLLRVSAAI 274
            +    A +      L    +      Q   +                L   L++ +  +
Sbjct: 230 AIARIKADSDYCDTLLEKKQKKANKFWQKYRDASLSLDYAFFTSFPLPLRIRLIQQACNL 289

Query: 275 CGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT 327
                 +P + S++R+ L+     +  V    + + R  + L  ++A  ++  
Sbjct: 290 LEIHKRIP-FASIQRLALY---SGKKTVQTSGIKLFREKDLLIFSKADTHIAH 338


>gi|88812394|ref|ZP_01127644.1| tRNA(Ile)-lysidine synthase [Nitrococcus mobilis Nb-231]
 gi|88790401|gb|EAR21518.1| tRNA(Ile)-lysidine synthase [Nitrococcus mobilis Nb-231]
          Length = 446

 Score =  198 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 78/342 (22%), Positives = 122/342 (35%), Gaps = 24/342 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +    +R       + +A SGG DS  LL A  +         +  SA+ VDH L   
Sbjct: 6   VAAFALAMRPWRPIPRLWIAYSGGCDSTVLLHAAVT-------SGLPVSALHVDHGLHPE 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + D   +    C  L +   V          GL AAAR+ARY   +          I TA
Sbjct: 59  SGDWALHCRARCQALGVPLRVEPVTVRDGGEGLEAAARKARYQAYAAILAP--GECIATA 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ ETV +R  R     G  L+G+           + RP L   R ++ ++  +  
Sbjct: 117 HHVDDQAETVLLRILRGTGIDG--LAGIPAERELGEG-RLIRPLLGFCRAELVAYATRHE 173

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +SW +DP+N  DR +R  +R  V  +       L  ++ +        +        + L
Sbjct: 174 LSWIDDPANRCDRHDRSFLREHVVPLLETRWPGLAQRLTRLARHADAASMLTERWARRQL 233

Query: 243 TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKR 299
           TV       +   +L   D      LLR      G +        R +  ++      ++
Sbjct: 234 TVLGDDPCVLPVAVLAEFDEAERVQLLRSWIRRQGRRPPPERRLCRGLMDLL-RAAPDRQ 292

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGR 341
             +      I R    L++       P  I  P     WD R
Sbjct: 293 PALVWADGCIRRYRGRLYLLPPRLPQPPAIGLP-----WDMR 329


>gi|332359485|gb|EGJ37304.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1056]
          Length = 425

 Score =  198 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 134/348 (38%), Gaps = 30/348 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  ++ E + +  +  +L +     S+  +        AAR+ RY    +  +  + T 
Sbjct: 59  QRPESEQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFGKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQHFEDNSNFQNDYLRNRIRN----LYLPNLEKENPQFKDSLRYLGKEIEEWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     I   Q        +  +LL+       G       +  E V+  L++     
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279

Query: 302 VSI---GRVVIDRRANFLW-ITRAVRNLPTLILYPEETTVWDGRYQFQ 345
            ++     +V D +   +  I+R        IL   E  +  G Y+F 
Sbjct: 280 HTLKKDYELVKDYQRFEIRKISRKPDLKMDSILLEFENLIEFGHYRFS 327


>gi|224367622|ref|YP_002601785.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223690338|gb|ACN13621.1| tRNA(Ile)-lysidine synthetase-like protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 362

 Score =  198 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 130/334 (38%), Gaps = 28/334 (8%)

Query: 13  VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEV 70
           V  +V P   IL+ VSGG DS+ L IAL  +  D     I      ++H LR+  +  + 
Sbjct: 20  VHGMVTPGDSILLGVSGGPDSVALAIALVLLRKDLG---ITLGIAHINHLLRDKESDRDE 76

Query: 71  RYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +V ++   L +    +    +    + Q  L   ARE RYA  ++  +    T     H
Sbjct: 77  AFVQELARSLELPFHPLKIDVATLARERQISLEETAREVRYAFFTDLCRHNGYTRTAVGH 136

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DD  E V M   R    +G+        I    + WI RP +   + +I +FL ++  
Sbjct: 137 TLDDNAELVLMNLLRGSGPRGLA------GIPPVRDHWIIRPLIGHTKGEILAFLREKAQ 190

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV---------NNAVAML 237
           ++  D +N +  F R R+R  +  +       ++ +  +   ++         N A A+ 
Sbjct: 191 AYVVDSTNLETVFLRNRIRNELLPLLRKEYNPRITENLNRVSRIMGEEDSWMDNEAGAVF 250

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG---QISLPGYRSMERVMLFL 294
               L      +         +   L   ++R +     G   +I+LP   ++  +    
Sbjct: 251 KTIRLEKKGPGVSLCLDGFNGLLPALKRRIVRKAIQAVKGDLKRITLPHVDAVAALAAAT 310

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328
             G+   +  GRV I +++  L   +    L  +
Sbjct: 311 SPGRSLDLP-GRVRIFKQSQTLCFKKEPLPLREI 343


>gi|323697897|ref|ZP_08109809.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. ND132]
 gi|323457829|gb|EGB13694.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans ND132]
          Length = 336

 Score =  198 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 112/292 (38%), Gaps = 18/292 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +LV +SGG DS  LL+ LH + S   F      A+ +DH LR  + D+  +   +
Sbjct: 38  LTGRRVLVGLSGGVDSTALLLVLHYLSSRADF---TVGAVHLDHQLRPESADDATFARAL 94

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C RL I   V +   ++       GL  A REARYAL +E  ++     I   H  DD  
Sbjct: 95  CERLGIDCEVETRDVARLAEERGVGLEEAGREARYALYAELRESGGWDFIALGHQLDDLS 154

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E V MR  R     G G  G+     +D    + RP L   +  +++F+    + W ED 
Sbjct: 155 EDVLMRLIR-----GTGWPGLSGMAGHDPARGLIRPLLLIPKSTLKAFVTHLGVPWREDA 209

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN D    R RVR  +    L  +  +   F     ++     +    +  +   +   +
Sbjct: 210 SNADPAMTRNRVRNEI----LPLIEKENPAFWQSVARLWRLGRVEQAFWAVLESEACEIL 265

Query: 253 SQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCV 302
               L  +      +L +      G GQ        ++      + G     
Sbjct: 266 DNSRLESLHKAQRLHLYKACLDRLGPGQALADTLFKLDEAWRDRRVGAVFQF 317


>gi|325278802|ref|YP_004251344.1| tRNA(Ile)-lysidine synthase [Odoribacter splanchnicus DSM 20712]
 gi|324310611|gb|ADY31164.1| tRNA(Ile)-lysidine synthase [Odoribacter splanchnicus DSM 20712]
          Length = 441

 Score =  198 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/338 (19%), Positives = 122/338 (36%), Gaps = 23/338 (6%)

Query: 7   ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E+++ F++   +   A  ++AVSGG+DS+ +L A   +        +K   +  +  LR 
Sbjct: 4   ETIKNFLQQHHISRDAGFILAVSGGADSICMLHAFKYL-------NLKMLVLHCNFSLRG 56

Query: 65  -TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
             +  + ++V   C    IAHSV  +       +    +  AARE RY    E  +    
Sbjct: 57  KESDMDEQFVKRFCDSYGIAHSVKKFDTLKYARENGLSVEMAARELRYTWFREMKEKKKM 116

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I+ AH  DD  ETV +   R    KG+       T +  +N  I RP L C R DI  
Sbjct: 117 DYIVVAHHADDVAETVLINLCRGTGIKGL-------TGIKSINGDILRPLLPCSRTDILK 169

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           ++    + +  D +N    + R ++R  +  +        +    +    +      +  
Sbjct: 170 YIEDHQLGFRTDSTNNSLDYVRNKIRHQIIPVLKEINPSFLDTMTENCETL-KETEEIFQ 228

Query: 240 KYLTVHMRSIIAISQDILNID-STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
             +      I+   +D L I  S  L      +      +        +  ++    +  
Sbjct: 229 YGIHRFQEEILDCEEDELLIHISKTLATPAPYTFLYETLKPFGFNKVQIRDILNTHTAIP 288

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
                 G   ++R   F  +    +   T++  P    
Sbjct: 289 GKQFIAGHHTLERGRIFWRLYDNSKCSRTIVSIPTTGI 326


>gi|322386421|ref|ZP_08060050.1| tRNA(Ile)-lysidine synthetase [Streptococcus cristatus ATCC 51100]
 gi|321269507|gb|EFX52438.1| tRNA(Ile)-lysidine synthetase [Streptococcus cristatus ATCC 51100]
          Length = 424

 Score =  198 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/302 (22%), Positives = 119/302 (39%), Gaps = 34/302 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   ++  R+F         +LVAVSGG DSM L   L+    +R   +I+     V+H 
Sbjct: 6   FRKQMQEKRYF----QNHRKVLVAVSGGLDSMTLFHLLYQ---NREELEIELGIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +S+   +L +     ++            AR  RY    E       T 
Sbjct: 59  QRPESNMEEKELSNFAQQLGVKFFSSNFSGDFS----EEKARRFRYRFFEEVMLAEGYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM +   +  N  + R  L   ++D    L
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMTEVQSFA-NGELIRLLLHFHKQDFPDIL 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
                   ED SN  + + R R+R     + L +L  +  +F+D  + +   V  L    
Sbjct: 172 ------HFEDKSNLQNDYLRNRIRN----LYLPSLEKENPRFKDSLISLGKEVENLQTAL 221

Query: 242 LTVHMR----SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
             +       ++    + I  + + LL   L+   ++          +  E ++  L++ 
Sbjct: 222 SHLTQGLDVTNLEVFERQIPEVQNFLLQEYLKKFPSLNTN------KKQFEEILGILRTK 275

Query: 298 KR 299
             
Sbjct: 276 AN 277


>gi|184154695|ref|YP_001843035.1| cell cycle protein [Lactobacillus fermentum IFO 3956]
 gi|183226039|dbj|BAG26555.1| cell cycle protein [Lactobacillus fermentum IFO 3956]
 gi|299782818|gb|ADJ40816.1| Cell cycle protein [Lactobacillus fermentum CECT 5716]
          Length = 449

 Score =  198 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 16/239 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  SP+ S RFF  S      ++VAVS G DSM LL  L ++   R     +     V+H
Sbjct: 8   MERSPLGS-RFFSSS----NTLVVAVSTGVDSMVLLDLLQNLPKLRR---PRLIVAHVNH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119
            LR  +  E  ++   C +  +   V  W  ++ P  G+ AAAR  RY+  +       A
Sbjct: 60  HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             + TAH  DD  ETV M+  R    + +G               + RP L   ++D+R 
Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           +     ++W ED +N D    R RVR       L +L ++  +           +  L+
Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVRHR----YLPSLSVENPRLVTALASDAEQINDLL 231


>gi|126663890|ref|ZP_01734885.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium BAL38]
 gi|126624154|gb|EAZ94847.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium BAL38]
          Length = 219

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 23/230 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I+S   F++         +AVSGG DSM LL             +  F  +  +  
Sbjct: 5   FTKHIQSHFSFLQR----DKFYIAVSGGIDSMVLLHLF-------QHFQFSFGVLHCNFK 53

Query: 62  LR-ETAKDEVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           LR E +  ++R++ D C     +LRI          + +  +   AR+ RY    E  + 
Sbjct: 54  LRGEESDADMRFIHDYCEENNIQLRIGFFETEMIAKELKESIQVTARKLRYNWFYEQMEE 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   + TAH  DD LET  +   R     G+       T + ++N  I RP L   RE+
Sbjct: 114 NDVQFVATAHHLDDSLETFLINLSRGTGIDGL-------TGIPEINDQIIRPLLPFSREE 166

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           I  +    NI W ED SN   ++ R ++R  V  I        +  FQ L
Sbjct: 167 IEQYAKVNNIQWREDASNATTKYLRNKLRHDVVPILKEINPEFLSSFQKL 216


>gi|291543862|emb|CBL16971.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Ruminococcus sp. 18P13]
          Length = 448

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 133/353 (37%), Gaps = 29/353 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E++  +   +     + VA+SGG+DS      L  +L+ R    I   A+ V+H
Sbjct: 1   MLHCMMETIHRYA-MVQPGDTVTVALSGGADST---ALLLGLLALREQLGISLRAVHVNH 56

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHA 114
            LR   +  +  + + +C   ++        V ++   +  T    AARE RYA +    
Sbjct: 57  HLRGAESDRDAAFCAQLCEERQVPFFLGTCDVATYAAQRKHTSCEMAARELRYAQLEALC 116

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                + I TAHT  D  ETV  R  R     G GL+G+C   +  +   I RP L   R
Sbjct: 117 --PPGSKIATAHTASDNTETVLERLTR-----GTGLAGLCG--IPPVRGRIIRPLLYVTR 167

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             I  FL Q++ S+  D +N  D F R R+R  V  +         +    +   +++  
Sbjct: 168 PQILGFLAQQHQSYVTDSTNAQDAFFRNRLRHHVLPVLRQQNPAVDRTVGVMTRILSDEQ 227

Query: 235 AMLIPKYLTVHMRSIIAISQ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
             L  +      R           + N+   +   +L +    CG ++S      +E+++
Sbjct: 228 QYLEQQAQDAFDRCFDPAQNSLSGLQNLHPAMERRVLALFLQRCGVEVSAVRIARVEQLL 287

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP---TLILYPEETTVWDGR 341
                          V +      L    A    P    ++L   E  +  GR
Sbjct: 288 QT----GGKQNIAAGVYLTADQGMLKWEHAQAPSPAVGEMVLQIGENRLMPGR 336


>gi|88705811|ref|ZP_01103520.1| tRNA(Ile)-lysidine synthase [Congregibacter litoralis KT71]
 gi|88699882|gb|EAQ96992.1| tRNA(Ile)-lysidine synthase [Congregibacter litoralis KT71]
          Length = 422

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 125/355 (35%), Gaps = 16/355 (4%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L  +E  R     L     + VA SGG DS  LL A H    DR        A+  +H 
Sbjct: 1   MLLALEECR---SQLSAAGQLFVAYSGGLDSTVLLHAAHKTCPDR------LVALHANHG 51

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           L+  A+    +    C +L +A +          +G+ AAAR+ARY    +        +
Sbjct: 52  LQAEARRWQAHCEAFCEQLGVAFASTELSLEPAGSGMEAAARDARYRWFEDRIGRGG--V 109

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++ AH  DDQ ET+ +R  R     G  L+GM           +       RR  ++ + 
Sbjct: 110 LLMAHHQDDQAETLLLRLLRGAGPDG--LAGMPQHRALGAGSLLRPLLSLPRRA-LKEYA 166

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +SW EDPSN D RF+R  +RR V  +                 ++      L    
Sbjct: 167 EESGLSWVEDPSNGDMRFDRNYLRREVMPLLERRWPGYRSTLSRTAAQLRERNEHLPAPR 226

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           L+            +  +        L +   +    +  P    +   +  L+ G+   
Sbjct: 227 LSTVQGCFGDPGFLVAALPEEPALAALALRDWLRERSLRPPSAAQLSEFLRQLREGRGAR 286

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTL--ILYPEETTVWDGRYQFQNLSDSLIQI 354
           +      I+R  + +++     +       +   E+  W G  +     +    +
Sbjct: 287 LQCPEWTIERYRDAVYLLPPPLDTAPEAGAITVGESLFWPGLGRLTLRREGAGNV 341


>gi|315924895|ref|ZP_07921112.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621794|gb|EFV01758.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 486

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 113/332 (34%), Gaps = 25/332 (7%)

Query: 13  VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EV 70
           V  +  P   ++V VSGG DSM LL  L    +      I   A  V+H +R  A + + 
Sbjct: 29  VHQMFEPGDRVIVGVSGGIDSMALLHFL---WTHADALGIAVMAGHVNHRIRGEAAEGDQ 85

Query: 71  RYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +V+  C+   I        V     + +  L  A R AR        +   A  I  AH
Sbjct: 86  TFVTQWCADHGIPALTAAADVPLTAKERKISLETAGRLARRRCFERWQRQTGAAKIALAH 145

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ETV M   R    +G             +     RPFL+ RRE I ++   + +
Sbjct: 146 HLDDQAETVLMHLIRGAGIRGAAGM-------RPVAGAFVRPFLQVRREAIEAYAAAQQL 198

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIP 239
              ED +N  D F R R+R  V  +           +    ++  D        +     
Sbjct: 199 PHVEDATNASDAFMRNRLRHQVMPVLTACNARAAAHIGAFAEQAADWCDAQREILETARE 258

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI--SLPGYRSMERVMLFLKSG 297
           + +T   R I         + + +   LL    A            +  M +  L   + 
Sbjct: 259 RCVTPTDRGIEVALPGWRALPAAVQGALLNRVMAEAAQTAVDFEARHVRMLQEKLAAPAT 318

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLI 329
                    +   RR + L  +R+ +  P   
Sbjct: 319 TWDLDLPHHLRARRRYDRLIFSRSGQRRPKPF 350


>gi|300812074|ref|ZP_07092522.1| tRNA(Ile)-lysidine synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496913|gb|EFK31987.1| tRNA(Ile)-lysidine synthetase [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 431

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 122/320 (38%), Gaps = 14/320 (4%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L    + LVA SGG DSM LL  +  +      G  +  A  +DH LR  ++ E 
Sbjct: 11  FAEEGLPLEGNFLVAASGGPDSMALLDLMRRL-----PGGFQLYAAHLDHQLRADSQKES 65

Query: 71  RYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + +   C + ++      W K+  P++GL AAAR+ RY  + E A+ + A  ++TAH  D
Sbjct: 66  QLLRAYCHKYQLPLYESVWPKSLHPESGLEAAARDYRYNFLFEVARQVKADYLLTAHHGD 125

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LE + ++  R    +          +     + + RP L   + D+ ++  ++ + + 
Sbjct: 126 DLLENILLKLVRSGIPRE---MNSLKPVSQWGQVKLVRPLLAVGKADLLAYAKKQGLEYV 182

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           ED +N      R R+R+ V  +        ++       ++             +     
Sbjct: 183 EDETNFTGITARNRLRQEVVPLLKRESPDLLENAWRFSQEMTAEEDYFAQAAGKLPEPEP 242

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
                 I          L++        +        ++R++L  +  +      G + +
Sbjct: 243 FFGGWRIPKAAGQAESELVKAYLENFIQKKYN-KRVQLDRILLANRQSQEK----GGLHL 297

Query: 310 DRRANFLWITRAVRNLPTLI 329
                + W+    +  P+ +
Sbjct: 298 SFYQGYYWLYPVKQPAPSPL 317


>gi|227514335|ref|ZP_03944384.1| tRNA(Ile)-lysidine synthetase [Lactobacillus fermentum ATCC 14931]
 gi|227087307|gb|EEI22619.1| tRNA(Ile)-lysidine synthetase [Lactobacillus fermentum ATCC 14931]
          Length = 449

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 16/239 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  SP+ S RFF  S      ++VAVS G DSM LL  L ++   +     +     V+H
Sbjct: 8   MERSPLGS-RFFSSS----NTLVVAVSTGVDSMVLLDLLQNLPKLKR---PRLIVAHVNH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119
            LR  +  E  ++   C +  +   V  W  ++ P  G+ AAAR  RY+  +       A
Sbjct: 60  HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             + TAH  DD  ETV M+  R    + +G               + RP L   ++D+R 
Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           +     ++W ED +N D    R RVR       L +L ++  +           +  L+
Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVRHR----YLPSLSVENPRLVTALASDAEQINDLL 231


>gi|146338275|ref|YP_001203323.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS278]
 gi|146191081|emb|CAL75086.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. ORS278]
          Length = 367

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 122/283 (43%), Gaps = 18/283 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+   F      PA +++AVSGG DSM LL          + G  +  AI+VDH LR  A
Sbjct: 22  EAEVLFASLADAPA-LVLAVSGGPDSMALLWLAARWRQALADGP-RLVAITVDHGLRPEA 79

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           + E   V     +L ++H ++ W   KP TG+  AAR ARY L++  A+   A+ ++TAH
Sbjct: 80  RREAAMVKRFARQLEVSHRMLRWTEPKPTTGIPEAARLARYRLLARAARQAGASHVLTAH 139

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV MR  R     G+        +     L ++RP L   +  + + L    I
Sbjct: 140 TRDDQAETVLMRLLRGSGIVGLAAM---APVSARDGLLLARPLLEISKARLVATLRSAGI 196

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
            + +DP+N D  + R R+R  +  +       +       R+   NA   L+      H+
Sbjct: 197 EFADDPTNHDPAYTRPRLRALMPALAAEGGDSRTLATLAGRLARANAAIELMVDGAEKHL 256

Query: 247 -------------RSIIAISQDILNIDSTLLFYLLRVSAAICG 276
                        +     ++  + + + +   LL  +    G
Sbjct: 257 ALRASRGGSIRPAQGQTFEARAFVALPAEIRLRLLMRAINQIG 299


>gi|295397830|ref|ZP_06807894.1| tRNA(Ile)-lysidine synthase [Aerococcus viridans ATCC 11563]
 gi|294973927|gb|EFG49690.1| tRNA(Ile)-lysidine synthase [Aerococcus viridans ATCC 11563]
          Length = 484

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 98/250 (39%), Gaps = 9/250 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             L+AVSGG DSM LL   H +        + FS I ++H LR  +  E   V   C   
Sbjct: 37  PFLLAVSGGVDSMVLLDLFHRLSQK---SLVTFSVIHINHQLRPESTAEQDMVIKFCEDR 93

Query: 81  RIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   +V+W +  PQ       AARE RYA+         +  ++TAH  +DQ ETV MR
Sbjct: 94  DIPIQIVAWDHDDPQNPNRSELAAREFRYAVFKRMMVLTKSPFLVTAHHQNDQAETVLMR 153

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                  K +        I  D  L   ++ RP L   + D+  +     I + ED SN 
Sbjct: 154 LVHGGRLKSIAGIHPYRPIHLDQGLQTGYVLRPLLSVDKADLYEYATAWQIPFSEDASNL 213

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D  + R R R+             +    D  +    A +     Y+   +R ++    D
Sbjct: 214 DLAYTRNRFRQQYLPELEAEDGALVDHLGDFALA-AQATSRFADAYMDQVLRDVLMKKDD 272

Query: 256 ILNIDSTLLF 265
              +D   + 
Sbjct: 273 TWQVDLAAIA 282


>gi|330896077|gb|EGH28298.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 286

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 64/257 (24%), Positives = 101/257 (39%), Gaps = 8/257 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +   AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQTAADGWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   L  AAR+ARY+  SE  + +   +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVQV-EPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R+ +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L    L     +  A S   + +    
Sbjct: 202 LRSQVVPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIANAQAATSFTWVGLPVLS 261

Query: 264 LFYLLRVSAAICGGQIS 280
           L  +  +SAA     + 
Sbjct: 262 LGPIAALSAARQRNALR 278


>gi|270308585|ref|YP_003330643.1| PP-loop [Dehalococcoides sp. VS]
 gi|270154477|gb|ACZ62315.1| PP-loop [Dehalococcoides sp. VS]
          Length = 476

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 130/319 (40%), Gaps = 28/319 (8%)

Query: 7   ESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E VR +++   LV   + IL+AVSGG DS+ +L  +H + S+  F         ++H LR
Sbjct: 9   ERVRKYIKKQGLVSAGNEILLAVSGGPDSVCMLYIMHKLSSEMGF---SLRLAHLNHGLR 65

Query: 64  -ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            E ++ +  YV+++   L +        V     +       AARE RYA +   A    
Sbjct: 66  GEESERDAAYVAELADNLGLPLCQQKISVKAYKDEHHLSTEEAAREMRYAFLCRTAAEHG 125

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLN-LWISRPFLRCRRED 176
           A  +   HT DD +ETV +   R    +G+ GL  +    +     L + RP L   R +
Sbjct: 126 AAAVAVGHTIDDNIETVMLHLVRGSGTRGLQGLRSVVGRDIAGAGCLRVIRPLLSLSRAE 185

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAV 234
            +S+  +  +S  +D +N      R R+R  V    L  L      F++  LR       
Sbjct: 186 TQSYCREAGLSPVQDATNQSTEPLRNRIRLEV----LPMLRAINPAFEETILRTAFIAGE 241

Query: 235 AMLIPKYLTVHMRSIIAISQDIL---------NIDSTLLFYLLRVSAAICGGQISLPGYR 285
            M +   +T  M++ + I QD +          +   L   LLR       G +     R
Sbjct: 242 EMALLDEVTSQMKAELVIRQDNVLMIEKIEMQRLHPALKRNLLRQMMEELLGGLKDIEAR 301

Query: 286 SMERVMLFLKSGKRGCVSI 304
            +E ++  L       + +
Sbjct: 302 HIESIVQTLDKPAGRRIDL 320


>gi|323345484|ref|ZP_08085707.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella oralis ATCC 33269]
 gi|323093598|gb|EFZ36176.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella oralis ATCC 33269]
          Length = 444

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 126/312 (40%), Gaps = 35/312 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L   +  +VA+SGG+DS+ LL+ L  +            A   +  LR E ++ +  +  
Sbjct: 18  LSKDSKYVVALSGGADSVALLLTLKRL-------GYVIDAAHCNFHLRGEESQRDEEFCI 70

Query: 75  DVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +C R  I    +H          +  +  AARE RY   ++    I A  +  AH  DD
Sbjct: 71  SLCKRENIRLHRSHFDTKAYAELHKISIEMAARELRYHYFNQLIHDIGAQGVCVAHHRDD 130

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ETV +   R     G G+ G+C   +   N  + RP L   R DI  +L Q +  +  
Sbjct: 131 SVETVLINLIR-----GTGIHGLCG--IAARNGNVLRPLLCVSRLDILEYLKQLHQEFVV 183

Query: 191 DPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           D SN  D   R ++R  +  +      ++Y  + K      +    +  L+   +    +
Sbjct: 184 DSSNLIDDVLRNKIRLDILPVMQNINPSVYTNIAKTAQYVREAVKMLDDLLKDKIVWQNK 243

Query: 248 SIIAISQDILNIDST-LLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--SGKRGCVSI 304
                S DI+NI +   L+YLL+                 +E+    LK  SGKR     
Sbjct: 244 GSYK-SFDIINIHTEYELWYLLK---------GYGFTSTQVEQAYHSLKSTSGKRWISKE 293

Query: 305 GRVVIDRRANFL 316
            +++IDR    L
Sbjct: 294 YQLLIDRGRLLL 305


>gi|56961886|ref|YP_173608.1| cell-cycle protein [Bacillus clausii KSM-K16]
 gi|61216430|sp|Q5WAE0|TILS_BACSK RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56908120|dbj|BAD62647.1| cell-cycle protein [Bacillus clausii KSM-K16]
          Length = 469

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 140/328 (42%), Gaps = 34/328 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE+ R F        ++LVAVSGG DSM LL  + ++   R   K+    + V+H LR E
Sbjct: 9   IENNRLF----GMETNVLVAVSGGPDSMALLAIMANL---REKWKLNLFGVHVNHRLRGE 61

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINAT 120
            +  +   V    +RL +  +V     +    +   G   AAR  RY +     + ++AT
Sbjct: 62  ESNKDAELVQSFSARLGVPCNVKDVDVAAFKAEHHVGTQQAARALRYQVFQGEMERVHAT 121

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TAH  DD++ET +M+  R      +   G+  T  +   + ++RP L   +  I ++
Sbjct: 122 VLLTAHHGDDEVETAFMKLTRGTTP--LTKLGIAATRPFANGV-LARPLLEETKRSIVAY 178

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAML 237
             ++ I +  D SN  D + R R R  +      +   ++  + +F   + + N+ +   
Sbjct: 179 CHEKAIPYRIDQSNFSDAYTRNRFRMNMAPYLVEENPHIHKHIGRFDRWQEEDNHYLMEQ 238

Query: 238 IPKYLTVHMR---------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISL---PGYR 285
              +L   +           I A+      +   ++  +L        G   +   P   
Sbjct: 239 AKAHLDQILTKKSEKSIELEIQALCLAPFPLQRRMIHLILNYLHLNVYGVNDMRVFP--D 296

Query: 286 SMERVMLFLKSGK-RGCVSI-GRVVIDR 311
           ++E++  FL++      + + GRV + R
Sbjct: 297 AIEQIQAFLQTSAPSAQLDLPGRVQVKR 324


>gi|167036726|ref|YP_001664304.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320115148|ref|YP_004185307.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855560|gb|ABY93968.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319928239|gb|ADV78924.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 458

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 123/308 (39%), Gaps = 24/308 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    + +++ + + +     I++ VSGG DS+ +L  L+++   +    +K   + V+H
Sbjct: 1   MIDKVVSTIKRY-KMIETNDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNH 56

Query: 61  CLRETAK-DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R  A   + ++V D+C +L++        V     +       A R  RY    E  K
Sbjct: 57  MIRGEAAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I  AH  +D +ETV++   R     G+         +  +N  I RP +   RE
Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227
           +I  +L ++++    D +N +D ++R +VR  +            +  +Y   K   +  
Sbjct: 170 EIEKYLKEKDLKPAIDFTNYEDLYKRNKVRLKLIPFINETFEVDIIENIYRMAKIILEEN 229

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +      +  +    +   I A  + +      +   L+R+      G I    Y  +
Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKLKTQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289

Query: 288 ERVMLFLK 295
           E V+  L 
Sbjct: 290 EDVLSLLD 297


>gi|229551622|ref|ZP_04440347.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus
           LMS2-1]
 gi|258540711|ref|YP_003175210.1| tRNA(Ile)-lysidine synthetase MesJ [Lactobacillus rhamnosus Lc 705]
 gi|229315026|gb|EEN80999.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus
           LMS2-1]
 gi|257152387|emb|CAR91359.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus rhamnosus Lc
           705]
          Length = 435

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/278 (27%), Positives = 118/278 (42%), Gaps = 17/278 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DSM LL              +     + DH LR  ++ E  +V+   
Sbjct: 13  PHTRVLVAVSGGVDSMVLLDLAVRA------PNLDVVVATFDHRLRPESRQEQAFVAAAA 66

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +R  +     +W+ S       AAAR+ARY  ++  A +  AT+IMTAH  DDQLETV  
Sbjct: 67  ARYHVPVVTGTWQRSAATAVSEAAARQARYDFLNASADSQAATVIMTAHHADDQLETVLF 126

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R        L G+     +     + RP L   ++DIR++  +  + +C+DPSN D 
Sbjct: 127 RLGRSGDP--AALVGIRPDQPWRKK-RLVRPLLNFSKDDIRAYAGRHGLDFCDDPSNADT 183

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII------- 250
           R+ R ++R  V           ++  Q    + +  VA+   +      R  I       
Sbjct: 184 RYARNQLRHQVIPAFKKQNPELLRHVQRFTTEQSGLVALAQMQLTEWQQRLRINSVTIDW 243

Query: 251 -AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            A +     I   LL  LLR         + +P  +S+
Sbjct: 244 RAAANQPRTIQLMLLATLLRQWQPRVNHGLLMPILKSL 281


>gi|87198103|ref|YP_495360.1| tRNA(Ile)-lysidine synthetase-like [Novosphingobium aromaticivorans
           DSM 12444]
 gi|123491176|sp|Q2GC97|TILS_NOVAD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|87133784|gb|ABD24526.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 326

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/311 (24%), Positives = 137/311 (44%), Gaps = 17/311 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           ++L     + +AVSGG DS+ L++ +  V          F   +VDH LR  +  E   V
Sbjct: 20  QALDPSGRVCLAVSGGPDSLALMLLMQEVAPR------DFCVATVDHGLRAESAAEAAMV 73

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           + +C    IA+  +    +   + +   AR+ARYA +++ A+    + ++TAH  DDQ E
Sbjct: 74  AGLCEMRGIAYHTLRLDLA-GGSAVQERARKARYAALADLARRDGLSAVVTAHHADDQAE 132

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R    +G+       ++     + + RP L  RR ++ + +    ++   DPS
Sbjct: 133 TLVMRLNRGAGLRGLAGMRAASSVPGAGEVRLLRPLLGWRRAELVALVEDAGLAPVLDPS 192

Query: 194 NTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N D R+ERVR+R  +   + +             +    +  AV  L   +L + M +  
Sbjct: 193 NHDHRYERVRIRDVMASTKALLPSGFAASASHLAEADAALEWAVERL---WLDIGMSAEG 249

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
           +      ++   L   LL       GG  ++P    + R +  L++G  G  ++  V  D
Sbjct: 250 STWNPPEDLPRVLALRLLERVVMHLGG--TVPRGPDLVRWLATLRAG--GVATLAGVKGD 305

Query: 311 RRANFLWITRA 321
            R+     +RA
Sbjct: 306 ARSGAWRFSRA 316


>gi|167570470|ref|ZP_02363344.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis C6786]
          Length = 491

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 21/320 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++++   + +L + A I +A SGG DS  LL A   +      G  +  A+ V H L   
Sbjct: 14  LDAIGVALSALPHDARIALAYSGGLDSTVLLHAAARIA-----GAERCVALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + + ++    L +          +    G+ A+AR+ARY  +        A  +  
Sbjct: 69  ADAWLAHCAETADALGVRFDAAHVDVPRASGQGVEASARDARYRALETMCARHGARALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPASTDVVRMRPLLHLLRAQLERYAQQH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKY 241
            + W +D SN + R+ R  +R  V    L AL      F+D      +   A   L+   
Sbjct: 188 ALRWIDDESNANTRYARNALRVDV----LPALAPHFPGFRDALGRTAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFL 294
             + +R++       L+ D+ +         LLR      G    S      M + +   
Sbjct: 244 AAIDLRAVAREDGRALSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 303

Query: 295 KSGKRGCVSIGRVVIDRRAN 314
           +      V      +    +
Sbjct: 304 RDAHALRVDHAGWRLRLYRD 323


>gi|330968943|gb|EGH69009.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 307

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/257 (25%), Positives = 99/257 (38%), Gaps = 8/257 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +   AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLYLLAELASRETLPALN--AIHVHHGLQPAADAWPEHCQQVCRTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   L  AAR+ARY+  SE  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRLQV-EPGPSLEQAARQARYSAFSE--RLGEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R  +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPDQRVL---GRGRLVRPLLDMSRMQLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L    L     +  A S   L +    
Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIAHAQAATSFAWLGLPVLS 261

Query: 264 LFYLLRVSAAICGGQIS 280
           L  +  +SAA     + 
Sbjct: 262 LGPIAALSAARQRNALR 278


>gi|85059904|ref|YP_455606.1| cell cycle protein [Sodalis glossinidius str. 'morsitans']
 gi|84780424|dbj|BAE75201.1| cell cycle protein [Sodalis glossinidius str. 'morsitans']
          Length = 542

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 137/337 (40%), Gaps = 27/337 (8%)

Query: 6   IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKI----KFSAISVDH 60
           ++ +R  V + V P   +L+A SGG DS  LL AL ++                A+ V H
Sbjct: 9   VQVLRRHVAARVAPYRALLLAFSGGLDSTVLLDALAALRDGDGLSGGDGAQTLRAVHVHH 68

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A +   + +  C R  +A +VV         G+ AAAR ARY  ++  A      
Sbjct: 69  ALSRHADEWAAHCAQECRRRDVAFTVVHVVVDATSEGIEAAARGARYGALA--AALTQDE 126

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++TA   DDQ ET+ +  +R     G+    +    L      + RP L   R ++ ++
Sbjct: 127 VLITAQHQDDQAETLLLALKRGSGPAGLASMAVDAPYL---GHRLVRPLLDFSRGELEAY 183

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---L 237
              R + W ED SNTD RF+R  +R  +    L  L  +  +F +   +     A    L
Sbjct: 184 AQARGLHWTEDDSNTDLRFDRNFLRLRI----LPPLRQRWPQFANAVARSAQLCAEQEQL 239

Query: 238 IPKYLTVHMRSIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
           + + L   +  +IA  + +       +  +    LLR   A  G  + +P    + R+  
Sbjct: 240 LDELLAETLADVIAPDESLRLTALATMSESKRAALLRRWLASLG--VRMPARAQLARLWQ 297

Query: 293 ---FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326
                +      + +   ++ R  + L++   +  L 
Sbjct: 298 EVALSRRDAVAQLKLDGRLVRRFRDRLYVVPRLPPLT 334


>gi|126653286|ref|ZP_01725397.1| hypothetical protein BB14905_08928 [Bacillus sp. B14905]
 gi|126589960|gb|EAZ84089.1| hypothetical protein BB14905_08928 [Bacillus sp. B14905]
          Length = 468

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 95/233 (40%), Gaps = 14/233 (6%)

Query: 8   SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            V+ F+     L    H+L+AVSGG DSM LL   H  +  +    I+  A+ VDH LR 
Sbjct: 6   KVKTFIEKEQLLQQDDHLLIAVSGGVDSMALL---HYFVQTQEHWNIRVEAVHVDHMLRG 62

Query: 65  TAKDEVR-YVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            A  E R +V   C    +        +    +          R  RY    E     NA
Sbjct: 63  EASAEDRAFVQKYCDENDVYLHATAISIPTILALENGNTQLICRRERYRYFKEVLYKTNA 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++TAH  DDQLE+V M   ++     M          Y     + RPFL   + +I  
Sbjct: 123 NKLVTAHHADDQLESVLMALTKNAT---MNSMQGIRPQRYFEGKSLIRPFLTVTKTEIGE 179

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
           +LL++ +++ ED SN+ D + R R R  V  +         ++      ++  
Sbjct: 180 YLLRKGLNYREDVSNSKDTYVRNRFRHHVVPLLEAENPRVTEQVTHFTSQLQE 232


>gi|55820113|ref|YP_138555.1| cell-cycle protein MesJ/Ycf62 family [Streptococcus thermophilus
           LMG 18311]
 gi|55822003|ref|YP_140444.1| cell-cycle protein MesJ/Ycf62 family [Streptococcus thermophilus
           CNRZ1066]
 gi|61217175|sp|Q5M217|TILS_STRT1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217177|sp|Q5M6K9|TILS_STRT2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|55736098|gb|AAV59740.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus
           thermophilus LMG 18311]
 gi|55737988|gb|AAV61629.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus
           thermophilus CNRZ1066]
          Length = 421

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 129/306 (42%), Gaps = 25/306 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+    
Sbjct: 17  QHKKVLVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEYEENYLRHWA 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++        ++        AAR  RY       K  + + ++TAH  DDQ ET++M
Sbjct: 74  KEHKVPFH----YSAFSGKFSENAARTFRYDFFKRIMKEADYSALVTAHHADDQAETIFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   LSG+CD   +     I RPFL   ++ +            ED SN+  
Sbjct: 130 RLLRGSRLR--HLSGICDVRSFGTG-QIIRPFLHIPKDQLPVT------FHFEDRSNSSL 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R       L  L  +  KF++    + + +A L+ K L    + I      + 
Sbjct: 181 AYLRNRIRLT----YLPTLSQENPKFKEHLCLLADEIA-LMDKALEELTKDITITDLSVF 235

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRANF 315
              +  + +LL  S       + L       ++M FL+    G + +  G V++  + +F
Sbjct: 236 QQQTDAVQHLLIQSYLESFPDLQL-SKGQFNQLMSFLRKKTSGKMPLKNGYVLVKTQTDF 294

Query: 316 LWITRA 321
           L IT+ 
Sbjct: 295 L-ITKE 299


>gi|116626984|ref|YP_819603.1| putative cell-cycle protein, MesJ/Ycf62 family [Streptococcus
           thermophilus LMD-9]
 gi|116100261|gb|ABJ65407.1| tRNA(Ile)-lysidine synthetase, MesJ [Streptococcus thermophilus
           LMD-9]
 gi|312277429|gb|ADQ62086.1| tRNA(Ile)-lysidine synthetase, MesJ [Streptococcus thermophilus
           ND03]
          Length = 421

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 129/306 (42%), Gaps = 25/306 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+    
Sbjct: 17  QHKKVLVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEYEENYLRHWA 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++        ++        AAR  RY       K  + + ++TAH  DDQ ET++M
Sbjct: 74  KEHKVPFH----YSAFSGKFSENAARTFRYDFFKRIMKEADYSALVTAHHADDQAETIFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   LSG+CD   +     I RPFL   ++ +            ED SN+  
Sbjct: 130 RLLRGSRLR--HLSGICDVRSFGTG-QIIRPFLHIPKDQLPVT------FHFEDRSNSSL 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R       L  L  +  KF++    + + +A L+ K L    + I      + 
Sbjct: 181 AYLRNRIRLT----YLPTLSQENPKFKEHLCLLADEIA-LMEKALEELTKDITITDLSVF 235

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRANF 315
              +  + +LL  S       + L       ++M FL+    G + +  G V++  + +F
Sbjct: 236 QQQTNAVQHLLIQSYLESFPDLQL-SKGQFNQLMSFLRKKTSGKMPLKNGYVLVKTQTDF 294

Query: 316 LWITRA 321
           L IT+ 
Sbjct: 295 L-ITKE 299


>gi|73663556|ref|YP_302337.1| hypothetical protein SSP2247 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72496071|dbj|BAE19392.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 431

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 20/264 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              HI++AVS G DSM LL   H +++       K + + V+H +R  AK+E  ++   C
Sbjct: 12  KDKHIVLAVSTGVDSMVLL---HELITRLKDSYAKLTCLHVNHNIRPIAKEEEYFLKQFC 68

Query: 78  SRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
               +   V     S   +    +   AR ARY    E    + A +++TAH  DDQ+ET
Sbjct: 69  KAHHVELYVRHLDLSDVIEKGNSIENDARVARYQWFDEMMYELKADILLTAHHQDDQIET 128

Query: 135 VYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           ++ R     + +  +G++       Y     I +P L   + +IR + +   + + ED +
Sbjct: 129 IFYRVMTGRSTRSSLGMAYQTTRASY----QICKPLLSTTKNEIRDYQVMHRVPYYEDET 184

Query: 194 NTDDRFERVRVRRFVRDIDLHALYL------KMKKFQDLRVKV--NNAVAMLIPKYLTVH 245
           NT + + R  +R  +         L      K+K++ D +++V  N AVA +    L   
Sbjct: 185 NTQNHYVRNDIRNRILPEINENAQLATDQLIKLKEWHDEQLEVINNEAVAFIKQDILKSV 244

Query: 246 MRSIIAISQ-DILNIDSTLLFYLL 268
                 I++   LN+  ++   +L
Sbjct: 245 KTQKYTIARSQFLNLRHSVKMAVL 268


>gi|78043578|ref|YP_359085.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995693|gb|ABB14592.1| tRNA(Ile)-lysidine synthetase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 449

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 115/301 (38%), Gaps = 19/301 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           ++   +++V+ + + +     ++V VSGG DSM LL  L     +  F       + V+H
Sbjct: 4   LYAKFVKTVQKY-QMINPGEKVVVGVSGGPDSMALLFCLLKYREEVDF---SLEVVHVNH 59

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTIN 118
            LR   +  +   V D   +  I   V    + K  +  L A AR+ RY    E  +   
Sbjct: 60  GLRGRESDLDEELVLDFTRKYGINFHVKKLDDLKDLRENLQAVARQKRYEFFYEVLEKTG 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I  AHT  D  ETV M   R    +G+         ++ +   I RP     R ++ 
Sbjct: 120 ADKIALAHTASDVAETVMMNILRGAGTEGL-------CGIWPVRDRIIRPLYTVFRREVM 172

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAML 237
           SF+ ++NI +  D SN   ++ R +VR  +           + ++  +L +       +L
Sbjct: 173 SFVERKNIPYRVDSSNLVPKYLRNKVRLKLFPFINEEFATDIEERLFNLALIKQEENQVL 232

Query: 238 IPKYLTVHMRSIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
                 +   + +   Q +      N+       LLR       G         +E ++ 
Sbjct: 233 DNYLNKLWQEAFVKEGQYLKVPVLQNLSRAEAGLLLRKFWEQATGSKRDLYQEHIENLLA 292

Query: 293 F 293
           F
Sbjct: 293 F 293


>gi|223933450|ref|ZP_03625435.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis 89/1591]
 gi|302023120|ref|ZP_07248331.1| PP-loop family protein [Streptococcus suis 05HAS68]
 gi|330831862|ref|YP_004400687.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis ST3]
 gi|223897888|gb|EEF64264.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis 89/1591]
 gi|329306085|gb|AEB80501.1| tRNA(Ile)-lysidine synthetase [Streptococcus suis ST3]
          Length = 422

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 111/291 (38%), Gaps = 23/291 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL       FF +       +LVAVSGG DSM L   L+     +    I+     ++H 
Sbjct: 5   FLKVTLDGHFFDKH----NKVLVAVSGGLDSMNLFHLLYEC---KQVLGIELGIAHINHG 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            RE +  E +Y+  +     +   +  ++          AAR+ RY   +   +    T 
Sbjct: 58  QREESVIEEKYLRQLAEESNVPFYLSYFEGVFS----EEAARKWRYGFFATIMEKEGYTA 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LS +  T  +     + RP L  ++ D     
Sbjct: 114 LVTAHHADDQAETVFMRLIRGGRLR--HLSAIQPTQPFATG-ELIRPLLSFKKADFE--- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               +   ED SN D ++ R RVR                   +  V  NN    L    
Sbjct: 168 ---KLFHFEDCSNADFKYFRNRVRNDYLPKLKQENPKIEFTLNNFAVDTNNLFQALRDLT 224

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
             + +  +++  Q    + S LL   L     +   Q+S P +  +  ++ 
Sbjct: 225 QDLSVTDVMSFQQQTPAVQSYLLEEYLEKFPDL---QLSRPQFNEVLHILR 272


>gi|189346163|ref|YP_001942692.1| tRNA(Ile)-lysidine synthetase [Chlorobium limicola DSM 245]
 gi|189340310|gb|ACD89713.1| tRNA(Ile)-lysidine synthetase [Chlorobium limicola DSM 245]
          Length = 325

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 125/330 (37%), Gaps = 35/330 (10%)

Query: 10  RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + F++ L          H+LVAVSGG DSM LL  L +V S     + + S    +  LR
Sbjct: 6   KTFLQQLRNRRLVAEGEHLLVAVSGGPDSMALLYLLCAVAS---VVRCRISVAHCNFQLR 62

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTIN 118
            E +  + R+V + C  L +      +  +      +  +   AR  RY+      +   
Sbjct: 63  GEESDSDERFVMEQCRLLGVECFSRQFDTAAVSASWKKSVEETARLQRYSWFETLLQERE 122

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I T H   D  ET+     R  +  G+         +  ++  + RP L   + DI 
Sbjct: 123 MTKIATGHHVSDNAETILFNLFRGTSLLGL-------KGIRAMHGRVIRPLLLLHKSDIL 175

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +L ++ I +  D SN    ++R  +R  V  +       + +    + ++  +  A  +
Sbjct: 176 GYLQEKEIPFRTDASNESIDYDRNFIRNRVIPLIEE----RFEHKLTVSLQRLSEQAGEL 231

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL---------PGYRSMER 289
             +L  +   +      +   +  L    LR  +     +I           P    ++R
Sbjct: 232 EAFLEGYFERLAEERPALFPAEGRLDVAELRKLSLFEQKEIFKRALQESGASPDAAILQR 291

Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWI 318
           ++  L S     + + G++V++ +   L  
Sbjct: 292 LVSLLDSQPGKKIVVNGKLVVEWKGGHLLF 321


>gi|284048931|ref|YP_003399270.1| tRNA(Ile)-lysidine synthetase [Acidaminococcus fermentans DSM
           20731]
 gi|283953152|gb|ADB47955.1| tRNA(Ile)-lysidine synthetase [Acidaminococcus fermentans DSM
           20731]
          Length = 350

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 25/293 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
               ++ A+SGG+DS+ L   + +   +     +   A+ V H LR E A+ + R V D 
Sbjct: 20  PGTKVIAALSGGADSLCLADVMAAQGEE---DGVDVLAVHVQHHLRGEEAEQDARQVEDY 76

Query: 77  CSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C    +A   V         K    L  AAR  RY  +    +   A  I  AH  DDQ 
Sbjct: 77  CRNRGLAFRRVDVDARSLAEKEGLSLEDAARRLRYEALETCRQEAGAEAIFLAHHQDDQA 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +   R    +G+         +  +N +++RPFL   R D  ++  +  ++WC+D 
Sbjct: 137 ETVLLNLVRGAGTRGL-------RGMLPVNGYLARPFLGITRRDTEAYCEEMGLTWCQDS 189

Query: 193 SNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           +N D   +R  VR+ +  +       +  ++ +   L       +  L  +Y+  + R +
Sbjct: 190 TNEDQSLKRNWVRKTLLPLLETQNPQIRKQLAQAAALAASDEAYLEKLAGRYIDAYGREV 249

Query: 250 -----IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
                I + +D   +   L   ++R+     GG      Y  + +++  +  G
Sbjct: 250 FDTWDIKVEKDFAALPLALQSRVIRILVRNVGGAE--LSYDHVRKILDMIARG 300


>gi|261403929|ref|YP_003240170.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Y412MC10]
 gi|261280392|gb|ACX62363.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. Y412MC10]
          Length = 476

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 16/280 (5%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  IE              I+VAVSGG DS+ LL  LH +   R+   ++     V H 
Sbjct: 9   FVQHIERTAAEFDLWSEGDGIVVAVSGGPDSVALLHVLHEISQHRT--PLRLICAHVHHG 66

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            R+ +  E   V ++   L +        +     +   G   AARE RY  + + A+  
Sbjct: 67  FRKESDQEAEMVRELAESLGLPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTARKH 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           NA  +  AH  DDQ ETV+MR  R     G+G      T   +  + + RPFLR  + DI
Sbjct: 127 NARSVALAHHADDQAETVFMRLLRGSGLSGLGGIKFKRT---EKKVELIRPFLRMYKADI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAV 234
                     +  D SN   ++ R  +R  V              + +  ++  + ++ V
Sbjct: 184 VELCRVCGFQYAVDHSNLQTKYRRNAIRLEVFPFLERYNGQFSSSLNQLAEIVQQEDDFV 243

Query: 235 AMLIPKYLTVHMRS----IIAISQDILNIDSTLLFYLLRV 270
            +   K     ++     +   +   L +   L   L+++
Sbjct: 244 ELEAAKQFRSLVQENDGRLAFDAPSFLGLHVALQRRLIKL 283


>gi|189502540|ref|YP_001958257.1| hypothetical protein Aasi_1198 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497981|gb|ACE06528.1| hypothetical protein Aasi_1198 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 454

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 20/246 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     +L+AVSGG DS+ +    H         ++ F+    +  LR + ++++  +V 
Sbjct: 24  LQAEEPVLLAVSGGVDSVVMCSLFHE-------ARLHFAIAHCNFGLRGQESEEDEAFVH 76

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +  + ++      +         +     AARE RYA   E         + TAH  +D
Sbjct: 77  TLAQQYQVEFFTKRFNTKAYAKTNKLSTQMAARELRYAWFKELCNIHQIDKLATAHHAND 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LETV          KG  ++G+   +    N  + RP L   +E++  +   + +SW E
Sbjct: 137 CLETVLFNL-----TKGTSIAGLHGILPKQNN--LIRPLLFASKENLLQYAQAKGLSWRE 189

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN  D + R  +R  V    L  +   ++   +L +   + V  L  + L    + I 
Sbjct: 190 DSSNKQDDYARNLIRHQVIP-SLKLINPNLESTTNLTIDRLSQVEKLFNEQLENIRKEIF 248

Query: 251 AISQDI 256
              +DI
Sbjct: 249 FQQEDI 254


>gi|167563298|ref|ZP_02356214.1| tRNA(Ile)-lysidine synthetase [Burkholderia oklahomensis EO147]
          Length = 491

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 114/320 (35%), Gaps = 21/320 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++++   + +L   A I +A SGG DS  LL A   +      G  +  A+ V H L   
Sbjct: 14  LDAIGVALSALPDDARIALAYSGGLDSTVLLHAAARIA-----GAERCVALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + + ++    L +          +    G+ A+AR+ARY  +        A  +  
Sbjct: 69  ADAWLAHCAETADALGVRFDAAHVDVPRASGQGVEASARDARYRALETMCARHGARALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPASTDVVRMRPLLHLLRAQLERYAQQH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKY 241
            + W +D SN + R+ R  +R  V    L AL      F+D      +   A   L+   
Sbjct: 188 ALRWIDDESNANTRYARNALRVDV----LPALAPHFPGFRDALGRTAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFL 294
             + +R++       L+ D+ +         LLR      G    S      M + +   
Sbjct: 244 AAIDLRAVAREDGRALSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 303

Query: 295 KSGKRGCVSIGRVVIDRRAN 314
           +      V      +    +
Sbjct: 304 RDAHALRVDHAGWRLRLYRD 323


>gi|163814651|ref|ZP_02206040.1| hypothetical protein COPEUT_00802 [Coprococcus eutactus ATCC 27759]
 gi|158450286|gb|EDP27281.1| hypothetical protein COPEUT_00802 [Coprococcus eutactus ATCC 27759]
          Length = 497

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 17/243 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78
            H +  VSGG+DS+ L+  L  +     +  I+   + ++H +R  A D +  YV ++C 
Sbjct: 36  KHCVCGVSGGADSVSLITVLVRLC---GYLGIELHVVHINHMIRGAAADSDQEYVEELCR 92

Query: 79  RLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQL 132
           +  ++       V    S     +  A R ARY       +       +I  AH  +D  
Sbjct: 93  KYGVSCNSYNIDVQTMASDRGFTVEEAGRLARYDAFDTVRRQYEGEGCVIAVAHNRNDVA 152

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV     R     G G+ G+        N  I RP L C R +I  +L +  I +C D 
Sbjct: 153 ETVIFNMAR-----GTGMGGIKGIAPVREN--IVRPLLGCDRSEIEGYLDRMGIPYCTDA 205

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +N +D + R ++R  +  + +      ++   D+     +   + +           I I
Sbjct: 206 TNNEDDYTRNKIRHKILPLMVEINEQAVEHICDMAELAADYERLALGVVEEFLKSQGIDI 265

Query: 253 SQD 255
           SQ+
Sbjct: 266 SQE 268


>gi|258645728|ref|ZP_05733197.1| putative tRNA(Ile)-lysidine synthase [Dialister invisus DSM 15470]
 gi|260403097|gb|EEW96644.1| putative tRNA(Ile)-lysidine synthase [Dialister invisus DSM 15470]
          Length = 473

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 112/293 (38%), Gaps = 22/293 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            IL AVSGG DS+     L ++       KI      V+H LR  A  E  +V  VC   
Sbjct: 26  RILAAVSGGPDSL---ALLLALKLLAVKEKINIGCCCVNHHLRAAAGKEAEFVESVCREW 82

Query: 81  RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            I   +         +    +  AAR+ RY  + E A+      I  AH  DDQ ETV  
Sbjct: 83  NIPFILKEVDVQSAVRNGGSIETAARDFRYKALREAARGGRYAKIAVAHHGDDQAETVLY 142

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R       GLSGM       +N  I RPFL   + +I+ FL   +   C D SN  +
Sbjct: 143 HLLRGSGV--TGLSGMK-----PINGDIIRPFLCVSKNEIKDFLKDFSYVPCHDESNDVE 195

Query: 198 RFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
              R R+R  +             +L      F++  + +     + I   +       +
Sbjct: 196 DAVRNRIRLSLVPELISYNPRVTESLRRTADIFREEDLFMEEKADVFISSCVEHDNDKCV 255

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
                 L +   L   ++R    +  G+I  P +   E+ +  + +GK G V+
Sbjct: 256 FFIAYFLALHIALQRRVIRKICCMVAGRI--PSFEGTEKFIFLIGAGKTGSVT 306


>gi|319943422|ref|ZP_08017704.1| tRNA(Ile)-lysidine synthetase [Lautropia mirabilis ATCC 51599]
 gi|319743237|gb|EFV95642.1| tRNA(Ile)-lysidine synthetase [Lautropia mirabilis ATCC 51599]
          Length = 476

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 142/368 (38%), Gaps = 29/368 (7%)

Query: 4   SPIESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           +P++++R  ++   L     +L+A SGG DS  L+ A+ ++        ++ +   V H 
Sbjct: 5   TPVDALRQCLQRAGLGPDDTLLLACSGGRDSQVLMHAVAALR-----PVVRAAVAHVHHG 59

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINA 119
           L+  A D + + +   S L +       + S      GL A AR  RY  +++ A  I A
Sbjct: 60  LQSRADDWLVFCAAEASSLGLPFLSRRLRVSAGFGALGLEAWARAGRYRALADMAAEIGA 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIR 178
            +++TAH  +DQLETV +R +R     G+        + +    + + RPFL   R+ + 
Sbjct: 120 RVVLTAHHANDQLETVELRRRRGSGLLGLAGMRESSPMPHAPAGMRVLRPFLGLSRQQLA 179

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNN 232
            +     I W EDPSN D R  R RVRRF+        + L      +   Q    ++  
Sbjct: 180 EWAQAHGIQWVEDPSNQDTRLARNRVRRFLDQRLRDDALSLPDELASIGLLQQAADRLLG 239

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRS 286
                +            A    +L+      +DS      LR      G    +P    
Sbjct: 240 QAEADVAACTVHLASHTAAADWPMLSRSAMMGLDSVRRAEALRWWLGRLG--CRMPSRLK 297

Query: 287 MERVMLFLKSGKRGCVSI--GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD---GR 341
           +  +   L         +    + + R  + + +   V  +  L+L  +  T  D   GR
Sbjct: 298 LFEIERQLLLAAASQALVRHDGITLLRYRDRIGVMPEVLPISPLLLRWKGETFVDLPAGR 357

Query: 342 YQFQNLSD 349
              +    
Sbjct: 358 LYIEQAGS 365


>gi|227824811|ref|ZP_03989643.1| hypoxanthine phosphoribosyltransferase [Acidaminococcus sp. D21]
 gi|226905310|gb|EEH91228.1| hypoxanthine phosphoribosyltransferase [Acidaminococcus sp. D21]
          Length = 350

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 122/302 (40%), Gaps = 27/302 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R       ++ A SGG+DS+ L   +     +     +      V H LR E A ++ R+
Sbjct: 16  RLWQEGGTVIAACSGGADSLTLTDIMAKAAEE---DDVTVLVAHVHHHLRGEEADEDARF 72

Query: 73  VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           VS  C    ++++           K    L  AAR  RY  +  + K + A  I  AH  
Sbjct: 73  VSAFCKDRDLSYTQFDIDPQALKEKEGLSLEDAARRLRYEALETYRKKVGAQGIFVAHHE 132

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET+ M   R    +G+         +  +N +I+RPFL   R+D+ ++  +  +S+
Sbjct: 133 DDQAETILMNLVRGTGTRGL-------RGMLPVNGYIARPFLAATRKDMETYCKEEGLSY 185

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             D +N +    R  VR  +  + L     ++K        V  +    + K    ++ S
Sbjct: 186 RTDSTNGNPALLRNWVRLELLPL-LATKNPRIKAALVQAAAVAQSDEAYLEKMAQKYLDS 244

Query: 249 I---------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
                     I +      +D  +   ++R++    GG+    G+  +++++  ++ G  
Sbjct: 245 FSRNIFGTYDIDVGPTFDKLDLAIKSRVIRLAVKGVGGEE--LGFDHVKKILRLIEKGIS 302

Query: 300 GC 301
           G 
Sbjct: 303 GK 304


>gi|295109538|emb|CBL23491.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Ruminococcus obeum
           A2-162]
          Length = 467

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 106/297 (35%), Gaps = 28/297 (9%)

Query: 1   MFLSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M    ++ V+ ++    ++ P   ++  VSGG DSM +L  L  +  D    +     + 
Sbjct: 1   MQEQVLQKVKQYIAETEMIKPQCTVIAGVSGGPDSMVMLDILRRLQGD---YECSLRVVH 57

Query: 58  VDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISE 112
           V+H +R   A  + + V  +C   +I   V S+   +     + G   A R  R A   E
Sbjct: 58  VNHGIRGKEALRDQKTVQKICEEWKIPCCVYSYDVPRLAAEWKMGSEEAGRMVRRAAFEE 117

Query: 113 HAKTINAT----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             K   ++     I  AH  +D  ET+     R    +G+         L  +N    RP
Sbjct: 118 EKKKCTSSDRKIRIALAHNKNDVAETMLHHLARGSGIRGLA-------ALKPVNGEFIRP 170

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLR 227
            L   R +I  ++ +  I    D SN +D + R R+R  +  +    +  K      +  
Sbjct: 171 VLCLERNEIVDYIKETGIPSMTDSSNLEDDYTRNRIRHHILPLMTEEINAKAVAHMAEAS 230

Query: 228 VKVNNAVAMLIPKYLTV-----HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
                A      K   +            + ++    ++ L  Y +R       G  
Sbjct: 231 ELFRQAEEYFKAKAEEMAAGCADGAGTYLLDKEFFAKETILQNYAVREILERLSGHR 287


>gi|330836936|ref|YP_004411577.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374]
 gi|329748839|gb|AEC02195.1| tRNA(Ile)-lysidine synthase [Spirochaeta coccoides DSM 17374]
          Length = 499

 Score =  197 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 134/337 (39%), Gaps = 33/337 (9%)

Query: 6   IESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           ++ +R F  S  +     I+VA SGG+DS  LL  L  ++   S       A+ V+H LR
Sbjct: 34  LDRIRSFFSSRSWNPREGIVVAFSGGADSSALLYLLSRLVPASS-----LVAVYVNHRLR 88

Query: 64  ETAKD--EVRYVSDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHA 114
              +   E+ + +  C++L I   +V       S + ++   G+ AAAR  RY ++    
Sbjct: 89  PAEELAGEIAHNTCFCAKLGIEIKIVDSGEDVISNRAAQEGDGIEAAARAVRYEILEAER 148

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             +    I T HT DDQ+ET+  R  R  +   +         +  +N  + RP L    
Sbjct: 149 ARLGFPWIATGHTSDDQMETILHRLLRGCSVAAL-------RGIEPVNGSVIRPLLDVSG 201

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVN 231
             +RS L  + +SW ED +N  D + R R+R  +  +      +    +  F        
Sbjct: 202 TVLRSLLKDKGLSWSEDSTNAMDDYTRNRIRHDLVPVIMDIFPSARETLYGFSKRAGAAA 261

Query: 232 NAVAMLIPKYLTV--HMRSIIAISQDILNIDS-----TLLFYLLRVSAAICGGQISLPGY 284
             + + +P++     +    ++   D L           +F L  +     G      G+
Sbjct: 262 RFMEVSLPRFADFFTYDEGNVSAPLDFLRSLERHVMGEAVFGLWNLLHQKEGRNPRKLGF 321

Query: 285 RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
            ++ER+   + +G+    + G         F W  R 
Sbjct: 322 AALERLQDMIAAGEGRIFAWGSEAFVADGRFWWHFRE 358


>gi|297545407|ref|YP_003677709.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843182|gb|ADH61698.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 464

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 127/308 (41%), Gaps = 24/308 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    I +++ + + +     I++ VSGG DS+ +L  L+++   +    +K   + V+H
Sbjct: 1   MIDKVISTIKRY-KMIKENDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R E A+ + ++V ++C +L++        V     +       A R  RY    E  K
Sbjct: 57  MIRGEEARRDAQFVENICCKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I  AH  +D +ETV++   R     G+         +  +N  I RP +   R+
Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGAGMTGL-------IGIKPVNGNIIRPLIEIERK 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK-- 229
           +I  +L ++ +    D +N +D ++R +VR     F+ +     +   + +   + ++  
Sbjct: 170 EIEIYLKEKGLKPALDFTNYEDLYKRNKVRLKLIPFINETFEVDIIKNIYRMAKIILEEN 229

Query: 230 --VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +      +  +    +   I A  + +      +   L+R+      G I    Y  +
Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIEKLRVQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289

Query: 288 ERVMLFLK 295
           E V+  L 
Sbjct: 290 EDVLSLLD 297


>gi|299139540|ref|ZP_07032714.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX8]
 gi|298598468|gb|EFI54632.1| tRNA(Ile)-lysidine synthetase [Acidobacterium sp. MP5ACTX8]
          Length = 395

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/257 (25%), Positives = 103/257 (40%), Gaps = 24/257 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76
               + VA+SGG+DS  LL+AL    + +    +  SA  V H LR   A D+  +V ++
Sbjct: 40  AGDRVCVAISGGADSTALLLALKEANAAKESLGVVVSAAHVHHGLRGGEADDDEVFVREL 99

Query: 77  CSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C RL +  +V     +  Q     G+  AARE RY  +           I TAHT DDQ 
Sbjct: 100 CERLAVPLTVFHVDTAARQAAEREGVEEAARELRYEALRGLLPEGRVDAIATAHTLDDQA 159

Query: 133 ETVYMRSQRDYAEK-------------------GMGLSGMCDTILYDLNLWISRPFLRCR 173
           ETV M+  R    +                   G+G+ G    +   +   + RP L  R
Sbjct: 160 ETVMMKLLRGAWTEGLGGISPVVQGLGIREQGLGLGVEGSGPRVQGSVGGRVVRPLLGVR 219

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           R ++ +FL  R   W  D SN D    R RVR  +  +         +   ++     + 
Sbjct: 220 RAEVEAFLQARGQVWRTDSSNRDLELTRNRVRHELMPVLRSFNPCVDELLANMAAIARDE 279

Query: 234 VAMLIPKYLTVHMRSII 250
            A    +   +  + ++
Sbjct: 280 EAHWETELRRLLPQVLL 296


>gi|259501962|ref|ZP_05744864.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus antri DSM 16041]
 gi|259170139|gb|EEW54634.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus antri DSM 16041]
          Length = 467

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 23/312 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            F   ++  RFF +       ++VAVS G DSM LL  +  + +         +   V+H
Sbjct: 15  QFKRHLQGGRFFDKR----DRVVVAVSAGVDSMVLLSLVTRLPAPLR---PTVTVAHVNH 67

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119
            LR  +  E  Y+   C    +   V  W +++ PQTG+  AAR  RY   +E      +
Sbjct: 68  ELRRQSWQEEEYLRQYCRAHDLPLLVKHWPRSAHPQTGIEEAARRFRYHFFAEVMAARQS 127

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            +++TAH  +D  ET+ M+  R        L G+     +     + RP L   +E +R+
Sbjct: 128 PILLTAHHQNDLAETILMKLVRGGQL--SQLVGINAVRPF-TGGRLIRPLLPFSKEQLRA 184

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---- 235
           + +   I W ED +N D    R R R  +           ++     R ++ + +A    
Sbjct: 185 YAVAAGIRWYEDTTNQDLTISRNRYRHEIIPALERENPQFVQHLASYRQQLTDLLAWQDQ 244

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLF 293
            +  +   V     + + +    +  T    +L+        +  LP  +   ++ V+  
Sbjct: 245 EVQGQLDRVQDGEELCLDKWG-QLPETAQRLVLQRWL-----EQRLPNIKQRLLDEVVGL 298

Query: 294 LKSGKRGCVSIG 305
           LK+      S+ 
Sbjct: 299 LKNSTVPQRSLA 310


>gi|118602173|ref|YP_903388.1| tRNA(Ile)-lysidine synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567112|gb|ABL01917.1| tRNA(Ile)-lysidine synthetase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 390

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 142/379 (37%), Gaps = 41/379 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
            +    I++ +SGG DS+ LL  L++   +++        I  +H L +   +  ++   
Sbjct: 10  FLKDKQIVLGLSGGIDSVVLLYYLNTHYPNKT------RVIHYNHHLSQYCNEWNKFCEK 63

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +C  L I +  +    +   + +    R+ RY  +S   K     ++ TAH  +DQ ET+
Sbjct: 64  LCLSLNITYLSIDLYFNN-TSNIEENTRKKRYHSLSNSLKKN--EVLCTAHHQNDQAETL 120

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    KG  L+ M       + +   RPFL   +  I  +     ++W ED SN 
Sbjct: 121 LLQLFRGSGIKG--LAAMPKEKPLGMGIH-YRPFLTISKFQIIDYAKNNKLNWIEDDSNK 177

Query: 196 DDRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           +  F R  +R  +         +L     +  K Q   +K+   +A +      +   + 
Sbjct: 178 NTNFMRNFLRLEILPKLSGAYKNLTRTLARSAKHQSEALKLIRELADIDMNTYHIINNAN 237

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRV 307
              +  ++ +++  +  +LR    +       P  + M +++  L  K      V   + 
Sbjct: 238 RIDTNRLIKLETHRIKNVLRHHLNLL--NFLTPSDKIMHQIIELLYTKENTNPLVCWDKY 295

Query: 308 VIDRRANFLW--------------ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
            I R  N L+                + ++N     +   +        + + L  +  Q
Sbjct: 296 EIRRYQNELYFINKTLPRKNAFCPFYKELKNFKNFSIRYRQEGQ-----RIKLLGKTHTQ 350

Query: 354 IGPQSYRKADVPSGIPPII 372
              +  ++A++P      +
Sbjct: 351 SLKKVLQEANIPPWERNRL 369


>gi|163796933|ref|ZP_02190889.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [alpha proteobacterium BAL199]
 gi|159177680|gb|EDP62231.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [alpha proteobacterium BAL199]
          Length = 426

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 154/374 (41%), Gaps = 26/374 (6%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL    +               +VDH LR  A  E   V  VC+     H ++ W  +
Sbjct: 1   MALLHLTDAWARGHGRA---LLVYTVDHGLRPEAVVEAGRVGQVCAMAGRPHRILRWLGT 57

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
           KP +GL AAAR ARY L+++  +      ++ AH  +DQ ETV  R  R     G  L+G
Sbjct: 58  KPGSGLQAAARRARYDLMAQACRDDGVVDLLLAHHLEDQAETVLHRIDRGTGPDG--LAG 115

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF---VR 209
           M     +D  + + RP L   +  + +      + W EDPSN+D RF R  +R+    + 
Sbjct: 116 MARVRAFD-GVRLLRPLLDVPKVRLLATCRSVGVEWAEDPSNSDPRFARTELRQLAPVLA 174

Query: 210 DIDLHALYL--KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFY 266
           D+ + ++ L          R  ++   A  + ++ +V +   + +++ +L      L   
Sbjct: 175 DVGVTSIRLGRLASAMASARAALDGFTADWMAQHASVLLVGAVRMNRAVLVEAPVVLRRR 234

Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKR----GCVSIGRVVIDRRANFLWITRAV 322
           L+  +    GG         +ER++ ++++ +        ++    ++   + L I R  
Sbjct: 235 LIDRALRAIGGNNYPLRSDGLERLLAWIEADRPETRTRTRTLAGCRVEIAGDGLTILRDW 294

Query: 323 RNLP-TLILYPEETTVWDGRYQFQNLSDSLIQIGP---QSYRKADVPSGIPPIIAQRALS 378
           R     +++       WD R++ +N + S +++G    + +R+              AL+
Sbjct: 295 RQAARPVVIAAHGRGRWDCRFEIENPTSSPVRVGVCGGEGWRR------WRRTAQSSALA 348

Query: 379 SMPSKEGGKPLLAP 392
             P       L  P
Sbjct: 349 GRPMVAHAARLALP 362


>gi|242279442|ref|YP_002991571.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio salexigens DSM 2638]
 gi|242122336|gb|ACS80032.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio salexigens DSM 2638]
          Length = 340

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 127/308 (41%), Gaps = 23/308 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LV VSGG DS  LL  + ++L+ +S G  +     +DH LR+ +  +  +V ++C+ L +
Sbjct: 40  LVGVSGGIDSTALL-IIATLLARKSGG--RVFCAHIDHNLRKESAGDRAFVEELCTELGV 96

Query: 83  A----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
                 + V+   ++   GL  A R  RY    +  K  +A  ++ AH   D  E V MR
Sbjct: 97  PVKSLKADVAGYAAERSIGLEEAGRIIRYDFFKQCLKKFDADFLLLAHHIGDLSEDVVMR 156

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G G   +     YD    + RP L   ++ +  FL      W ED SNT D 
Sbjct: 157 LIR-----GTGWPALAGMDAYDPKRKLLRPLLSTDKDSLEDFLRSIGCPWREDESNTCDD 211

Query: 199 FERVRVRRFVRDI------DLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHMRSIIA 251
           + R R+R  +  +      +L A  +++K   +L     +  VA  I     V     I 
Sbjct: 212 YTRNRIRNHIMPLLYNENPNLGAGLIRLKNQAELDEAFWDEQVAEAIKHVQEVEDG--IL 269

Query: 252 ISQDILNI-DSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           +   ILN   S L   + +      G G         +++  L  KSG        +VV 
Sbjct: 270 LPCSILNKYHSALRLRIYKKILDDLGPGHTLFDSIILLDQGFLARKSGSTFQFPGKKVVK 329

Query: 310 DRRANFLW 317
             +A  L+
Sbjct: 330 VNKAGLLF 337


>gi|218961145|ref|YP_001740920.1| putative tRNA(Ile)-lysidine synthase (tilS-like) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729802|emb|CAO80714.1| putative tRNA(Ile)-lysidine synthase (tilS-like) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 482

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 27/283 (9%)

Query: 3   LSPIESVRFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           ++  E+++   +++           +L+  SGG+DS  +L     +   R    +    I
Sbjct: 1   MTIAEALKRLEKNIKENELIHNGDKLLLGCSGGADSNAMLYLFSRL---RVPLNLTLLVI 57

Query: 57  SVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
            ++H +R   +  +  +V  +C  L I   ++          L   AR+ R+ + ++  +
Sbjct: 58  HINHQIRGAESDADEDFVKQLCQDLNIP-VIIRKIVVPETGNLENQARKLRFEVFNKILE 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           + N   I+ AH  +DQ ETV +   R     G G+SGM    +  +   +  P L   R+
Sbjct: 117 SYNFDKILLAHQKEDQAETVMLNFLR-----GAGISGMAG--IKGITGKVVHPLLCFSRK 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAV 234
           ++   L Q  ISW  D SN + +F R  +R  +           +K     L    + A 
Sbjct: 170 ELEEVLKQAGISWRTDSSNLETKFRRNLLRNEIMPQLEKEFNPALKSHLFFLAELFSQAE 229

Query: 235 AMLIPKYLTVHMRSIIAISQD--------ILNIDSTLLFYLLR 269
            +   +  T   R  I I           +L +     +YL R
Sbjct: 230 TIFKQRSKTQFRRLCIDIQPGKVVFELTPLLKLSPIERYYLFR 272


>gi|42572523|ref|NP_974357.1| RSY3 (RASPBERRY 3); ATP binding / ligase, forming carbon-nitrogen
           bonds / nucleotide binding [Arabidopsis thaliana]
 gi|332643401|gb|AEE76922.1| protein raspberry 3 [Arabidopsis thaliana]
          Length = 660

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 127/309 (41%), Gaps = 28/309 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK-FSAISVDHCLRETAKD 68
           L     I + VSGG DSM L +      ++      ++ G I    AI VDH LR+ +KD
Sbjct: 81  LKPHNRIALGVSGGPDSMALCVLTAKWKTEGLSCVNKTDGFIDGLVAIVVDHGLRQESKD 140

Query: 69  EVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTA 125
           E   V    S++ I   + S  W + +P+ G L  AARE RY +IS         +++ A
Sbjct: 141 EAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIA 200

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRR 174
           H  DDQ E   +R  R     G+  +     I           + + ++ + RP L   +
Sbjct: 201 HHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWK 260

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKV 230
           ED+          W EDP+N    F R R+R  + +++       L   + + +  R  V
Sbjct: 261 EDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFV 320

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSM 287
           +     LI + +TV  +    +  + LN        L +   A+      +       + 
Sbjct: 321 DKVCTDLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTS 380

Query: 288 ERVMLFLKS 296
           + ++ ++++
Sbjct: 381 KLLLNYIRA 389


>gi|260663744|ref|ZP_05864632.1| cell cycle protein [Lactobacillus fermentum 28-3-CHN]
 gi|260551795|gb|EEX24911.1| cell cycle protein [Lactobacillus fermentum 28-3-CHN]
          Length = 449

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/276 (27%), Positives = 115/276 (41%), Gaps = 19/276 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  SP+ S RFF  S      ++VAVS G DSM LL  L ++   R     +     V+H
Sbjct: 8   MERSPLGS-RFFSSS----NTLVVAVSTGVDSMVLLDLLQNLPKLRR---PRLIVAHVNH 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119
            LR  +  E  ++   C +  +   V  W  ++ P  G+ AAAR  RY+  +       A
Sbjct: 60  HLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYSFFATVMDKYQA 119

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             + TAH  DD  ETV M+  R    + +G               + RP L   ++D+R 
Sbjct: 120 QAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGA---LIRPLLALNKQDLRR 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR-RFVRDIDLH------ALYLKMKKFQDLRVKVNN 232
           +     ++W ED +N D    R RVR R++  + +       AL    ++  DL    N 
Sbjct: 177 YAKDHQLTWFEDETNRDLTPFRNRVRYRYLPSLSVENPRLVTALASDAEQINDLLGLANE 236

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
            +  L     T    S+ A  +   +   + L Y L
Sbjct: 237 RLGELDATLRTERGFSLAAFRRLSESTQRSYLRYYL 272


>gi|289551692|ref|YP_003472596.1| tRNA(Ile)-lysidine synthetase [Staphylococcus lugdunensis HKU09-01]
 gi|289181223|gb|ADC88468.1| tRNA(Ile)-lysidine synthetase [Staphylococcus lugdunensis HKU09-01]
          Length = 430

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 122/253 (48%), Gaps = 21/253 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            HI++AVS G DSM LL AL  +  D      K + + V+H LRE + +E R+    C +
Sbjct: 12  DHIVLAVSTGVDSMCLLYALTHLYRD---TYRKLTCLHVNHGLREESIEEERFFQTYCEQ 68

Query: 80  LRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            ++++ +     S        +   +R+ RY         +NA +++TAH  DDQLET++
Sbjct: 69  HQLSYDIKHLDLSHLVASGKSIQNDSRQMRYQWFDYKMHELNADVLLTAHHLDDQLETIF 128

Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R     A +  +G+S +     Y     I RP L+  ++DIR F    ++ + ED SN 
Sbjct: 129 YRLFSGRATRSRLGMSYLTAREQYK----ICRPLLQSHKQDIRYFQQVHHVPFYEDCSNH 184

Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRV-KVNNAVAMLIPKYLTV-HM 246
            +++ R  +R  +         +D+  L LK+K + D ++ ++ N  +  I  Y+ + H 
Sbjct: 185 INKYVRNDIRNRLIPEINDNEQLDVEQL-LKLKAWHDAQMEQLENKTSRFIQDYVNMNHN 243

Query: 247 RSIIAISQDILNI 259
            ++I   +   N 
Sbjct: 244 HTMITCPRTRFNC 256


>gi|78048470|ref|YP_364645.1| putative cell cycle protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036900|emb|CAJ24593.1| putative cell cycle protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 450

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 123/353 (34%), Gaps = 17/353 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  +L+  SGG DS  LL  L +    R  G     A+ V H L   A     +    C
Sbjct: 29  PPGPVLLTYSGGMDSSVLLHLLAATPRYRHAG---LRALHVHHGLHADADAWAAHCQRTC 85

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             L++   +V  + ++  +GL   A        +          +  AH  DDQ ET  +
Sbjct: 86  DTLQVPLQIVRVQVAR-DSGLGLEAAARHARHAAFAQALTAGEWLALAHHRDDQAETFLL 144

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ R    +G+             +  + RP L   R D+ ++   + + W EDPSN D 
Sbjct: 145 RALRASGPEGLAAM---RPQRPFASGTLWRPMLAHARADLHAYAHAQGVRWIEDPSNADP 201

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQ 254
           R +R  +R  V  +                    +A A+L+ + + +      +  A+  
Sbjct: 202 RHDRNFLRSQVVPLLQQRWPQAPDALARSAQLSADASALLLQQDMALLPSVQTASGALDL 261

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRR 312
             L          L  +         LP     ++ER +    + ++ C +   V + R 
Sbjct: 262 QALRAQPVERRARLLRAWVSAAHAPPLPAQGVAALEREIDNHAADRQACFAWQGVEVRRW 321

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              L++ R     P+     +    WDG         + +++      +   P
Sbjct: 322 RQCLFLNRPAAAWPS-----DWHAQWDGAAPLHLPDGAQLRLLGAPGLRFAQP 369


>gi|295089879|emb|CBK75986.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Clostridium cf.
           saccharolyticum K10]
          Length = 464

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 131/353 (37%), Gaps = 45/353 (12%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  ++     L     ++V +SGG+DS+ LL  L  +   RS   I+  A+ V H LR
Sbjct: 3   EKVSRYMEKNGMLKAGQRVVVGLSGGADSVCLLSLLSDM---RSSLSIRLRAVHVHHGLR 59

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHA---- 114
            + A  +  +  ++C +L I   +       +    +     A R  RY    + A    
Sbjct: 60  GQEADRDADFSRELCRKLDIPFILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWE 119

Query: 115 ----KTINATL---IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
               +   A L   I  AH  DD  ET+     R    +G+         +  +   + R
Sbjct: 120 DKEREQEGAALPVRIAVAHHGDDSAETILYHLFRGSGLRGLA-------GIAPVRGRVIR 172

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKF 223
           P L   R++I  +L +  +S+  D +N  + + R R+R  +  + +  +       + + 
Sbjct: 173 PLLCVSRQEILEYLREEGLSYVTDSTNLLNDYTRNRLRNQILPMAVQEINRGAVEHILRA 232

Query: 224 QDLRVKVNNAVAMLIPKYLT---------VHMRSIIAISQDIL-NIDSTLLFYLLRVSAA 273
            ++  + +        ++L          +    ++A+    L ++      Y++R + +
Sbjct: 233 GEIIGEADQFFRERAGEFLKKEGIWKESCLEKSRMLAVPVSALGSLAHIEQGYVIREAFS 292

Query: 274 ICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
             G  +       +E ++  L  ++G    +  G        N +   +    
Sbjct: 293 ELGWPLRNIDASHIESILSLLDGRTGAGADLPGGVRAERVYENLVLKKKERAA 345


>gi|67924269|ref|ZP_00517706.1| PP-loop [Crocosphaera watsonii WH 8501]
 gi|67853884|gb|EAM49206.1| PP-loop [Crocosphaera watsonii WH 8501]
          Length = 322

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/332 (19%), Positives = 129/332 (38%), Gaps = 24/332 (7%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M+ +    V   ++    L + +++L+AVSGG DS+ LL  +  +     +     +   
Sbjct: 1   MWTNIHARVHQTLKDSCILPHKSNLLIAVSGGQDSLCLLKIMIDLQEKWGW---NIAIAH 57

Query: 58  VDHCLRETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
            DH     +      +V  + +   I   +   K  K      AAARE RY  + E A+ 
Sbjct: 58  CDHGW--ASDLGIADHVEKIANNWNIPFYLKVAKAMKET---EAAAREWRYQSLVEIAEE 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   I+T HT  D+ ET+     R     G+G   +        N+ + RP L+  R +
Sbjct: 113 NDCREIVTGHTLSDRSETLLYNLIRGAGSNGLG--ALTWKRPLTNNINLVRPLLKVSRGE 170

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
              F  Q  +   ED +N +  + R R+R+ +           ++       +V  A + 
Sbjct: 171 TLEFCQQFALPIWEDAANANLDYARNRIRQELVPYLKENFNPNVETTLSQTSEVLKAESD 230

Query: 237 LIPKYLTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
            +       + S +      LN      +   L   ++R   A     +S P +  +E  
Sbjct: 231 YLEAEANKILLSAVNDHNSKLNREVLKGVPLALQRRVIRQFLAKIM--VSKPNFEQIEET 288

Query: 291 MLFLKSGKRGCVSI--GRVVIDRRANFLWITR 320
           +  + + ++   S   G+++++   N++   R
Sbjct: 289 VNLIDAPRKSRTSSFPGKIMLEVEENYIVQKR 320


>gi|167039445|ref|YP_001662430.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X514]
 gi|300915475|ref|ZP_07132788.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X561]
 gi|307725230|ref|YP_003904981.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X513]
 gi|166853685|gb|ABY92094.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X514]
 gi|300888535|gb|EFK83684.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X561]
 gi|307582291|gb|ADN55690.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter sp. X513]
          Length = 458

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 123/308 (39%), Gaps = 24/308 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    + +++ + + +     I++ VSGG DS+ +L  L+++   +    +K   + V+H
Sbjct: 1   MIDKVVSTIKRY-KMIETNDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNH 56

Query: 61  CLRETAK-DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R  A   + ++V D+C +L++        V     +       A R  RY    E  K
Sbjct: 57  MIRGEAAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I  AH  +D +ETV++   R     G+         +  +N  I RP +   RE
Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227
           +I  +L ++++    D +N +D ++R +VR  +            +  +Y   K   +  
Sbjct: 170 EIEKYLKEKDLKPAIDFTNYEDLYKRNKVRLKLIPFINETFEVDIIENIYRMAKIILEEN 229

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +      +  +    +   I A  + +      +   L+R+      G I    Y  +
Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKMKTQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289

Query: 288 ERVMLFLK 295
           E V+  L 
Sbjct: 290 EDVLSLLD 297


>gi|256751848|ref|ZP_05492720.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749255|gb|EEU62287.1| tRNA(Ile)-lysidine synthetase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 458

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 123/308 (39%), Gaps = 24/308 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    + +++ + + +     I++ VSGG DS+ +L  L+++   +    +K   + V+H
Sbjct: 1   MIDKVVSTIKRY-KMIETNDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYIVHVNH 56

Query: 61  CLRETAK-DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115
            +R  A   + ++V D+C +L++        V     +       A R  RY    E  K
Sbjct: 57  MIRGEAAKRDAQFVEDMCRKLKLPFFLFEKDVKKIAKEMGYSEEEAGRYVRYQAFEEVLK 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I  AH  +D +ETV++   R     G+         +  +N  I RP +   RE
Sbjct: 117 EVKGNKIAVAHNKNDVVETVFLNLIRGSGMAGL-------IGIKPVNGNIIRPLIEIERE 169

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLR 227
           +I  +L ++++    D +N +D ++R +VR  +            +  +Y   K   +  
Sbjct: 170 EIEKYLKEKDLKPAIDFTNYEDLYKRNKVRLKLIPFINETFEVDIIENIYRMAKIILEEN 229

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +      +  +    +   I A  + +      +   L+R+      G I    Y  +
Sbjct: 230 DYLEKECEKIFNEVCYFNQEEIFADIKKMKTQHPAIQRRLVRLMYQKLKGDIYGLEYIHV 289

Query: 288 ERVMLFLK 295
           E V+  L 
Sbjct: 290 EDVLSLLD 297


>gi|255534562|ref|YP_003094933.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10]
 gi|255340758|gb|ACU06871.1| tRNA(Ile)-lysidine synthetase [Flavobacteriaceae bacterium 3519-10]
          Length = 434

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 119/309 (38%), Gaps = 35/309 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78
           A  L+AVSGG DSM LL          S   ++F    V++ LR   +  + R V + C+
Sbjct: 21  ARYLLAVSGGVDSMVLLYLF-------SHSNLEFEVAHVNYRLRGVDSDADQRIVEEFCA 73

Query: 79  RLRIAHSVVSW--KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           +  +   V      + KP   +   ARE RY    +     +   I+TAH  +DQLET  
Sbjct: 74  KHHLTLHVYEVGDHDGKPANSVQLWARELRYGFFRKIQIQSDLQYIVTAHHLNDQLETFI 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R     G  LSG+           I RP L   + DI  F  QR+I + ED SN+ 
Sbjct: 134 INLSRASGLNG--LSGIPS-----NENGILRPLLNFTKNDIYDFAAQRSIQFGEDVSNSK 186

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-------VAMLIPKYLTVHMRSI 249
           + + R  +R  +    L      +  F      ++ A       ++ +  + ++    SI
Sbjct: 187 NDYLRNFIRNEIAHRLLETNTGFLPNFSRTIHYLDQAKDFIHEQISAVEDEIISHSDDSI 246

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           +   +        + F +LR             G+ S   V   + + K  C      ++
Sbjct: 247 LIDREKFGQQSDFVKFEILRKL-----------GFDSATEVQKIVAAEKGKCFKSADYIL 295

Query: 310 DRRANFLWI 318
               N L +
Sbjct: 296 TVDRNHLIL 304


>gi|189499568|ref|YP_001959038.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides BS1]
 gi|189495009|gb|ACE03557.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides BS1]
          Length = 334

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 35/336 (10%)

Query: 10  RFFVRSLV------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           R F+  L          H+L AVSGG DSM LL  L +V   RS  K++ S    +  LR
Sbjct: 10  RKFLEQLTVRKLVSRREHVLAAVSGGPDSMALLYLLCAV---RSVLKVRISVAHCNFQLR 66

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTIN 118
            E ++ +  +V   C +L +   V  +   K     +  +   AR  RY    E      
Sbjct: 67  GEESELDEEFVRSECEKLGLECFVRRFDTQKDARRLKKSIEETARIERYGFFHELIAKDG 126

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              + T H   D  ETV     R  +  G+         +   +  + RP L  ++ DI 
Sbjct: 127 FDRVATGHHVSDNAETVLFNLIRGSSISGL-------KGIRSEHGHVIRPLLLMQKRDIT 179

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            ++ ++ IS+  D SN     +R  +R  +  +       K        ++  +  A  +
Sbjct: 180 RYIGEKEISYRVDSSNIGIEPDRNFIRNKIIPLIEERFNNKF----LPSLQRLSEHAGEL 235

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL---------PGYRSMER 289
            ++L +H   I+   + +   D+ L    LR        +I              +++++
Sbjct: 236 EEFLELHFERIVREDEGLALKDNRLFVPSLRKLTVFERKEIFKRALGKLGCEYSSKALQQ 295

Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRN 324
           +   L++     V +   + I  +  +L+ TR   N
Sbjct: 296 LAELLQTQPGRTVQLAAGLEILWKGKYLYFTRKSGN 331


>gi|289675284|ref|ZP_06496174.1| PP-loop [Pseudomonas syringae pv. syringae FF5]
          Length = 276

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 100/255 (39%), Gaps = 8/255 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  + S  +   +   AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELASRETLPALN--AIHVHHGLQTAADGWPEHCQQVCKTLGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   L  AAR+ARY+  SE  + +   +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVQV-EPAASLEQAARQARYSAFSE--RLVEGEVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R+ +  +  +  ++W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPDQRVL---GRGHLLRPLLDVSRKHLEDYAHRHGLNWIEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L    L     +  A S   + +    
Sbjct: 202 LRSQVLPLLTSRWPQAAASLARTARHLGEAQQLLDELALQDIANAQAATSFTWVGLPVLS 261

Query: 264 LFYLLRVSAAICGGQ 278
           L  +  +SAA     
Sbjct: 262 LGPIAALSAARQRNA 276


>gi|237710749|ref|ZP_04541230.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229455471|gb|EEO61192.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 434

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 122/336 (36%), Gaps = 42/336 (12%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF   I+      +       +LVA+SGG+DS        ++L           A   + 
Sbjct: 1   MFHWNIQKYIEEKQLFTLHDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR E +  + R+V+++C  L +A  V  +      S+    +  AARE RY    +  K
Sbjct: 54  HLRGEESDRDERFVNELCKGLGVALHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRK 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                +I  AH  DD +ET  +   R     G+         +   N  I RP L   R+
Sbjct: 114 ERGGAVIAVAHHRDDSVETFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQ 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228
           DI  +L      +  D +N  D + R ++R       R +      ++    ++  D+ +
Sbjct: 167 DILDYLRCLRQGYVTDSTNLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSL 226

Query: 229 KVNNAVAMLIPKYLTVHMRSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             N  +     + +      +I  + ++  +  + LLF +L              G+ S+
Sbjct: 227 IYNKEIEAGKERVMEKSGHILISRLMEE--SAPAALLFEIL-----------HPLGFNSV 273

Query: 288 ER--VMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
           +   V   L +            I R    L I R 
Sbjct: 274 QAGDVFRSLSAQSGKRFVSAGWEILRDRTELIIRRR 309


>gi|323138991|ref|ZP_08074051.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
 gi|322395745|gb|EFX98286.1| tRNA(Ile)-lysidine synthetase [Methylocystis sp. ATCC 49242]
          Length = 332

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 19/317 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +L+AVSGG DS+ L++        RS      +  +VDH LR  A+ E   V  
Sbjct: 13  LAPHRSLLLAVSGGPDSVALMLLAAQWPDRRSH---DIAVATVDHGLRPEARREAEQVGA 69

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             + L   H V++W+  KP+T +   AR ARYAL+++ A  I A  I+TAH  DDQ ET+
Sbjct: 70  WANALGFPHHVLTWQGEKPRTRVQERARTARYALLADCAGRIGAGAIVTAHHADDQAETI 129

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R  R       GL+GM         + + RP L  R+  +     + +  +  DPSN 
Sbjct: 130 LFRLTRGSGV--AGLAGMTAE-SRCGGVALLRPLLGLRKAALEEICRRCDHDYFRDPSNI 186

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D+ + R R+R+ +R + L A  L  +    L  +  +A A L         R+I+ +  +
Sbjct: 187 DEHYARARLRK-LRPL-LAAQGLDDEALLRLGQRAAHADAALNFCAENARERAIVDVDSE 244

Query: 256 ILNIDSTLLFYL----LRVSAAICGGQISLPGYRSMERV-------MLFLKSGKRGCVSI 304
               D+  L  L    ++   A    +++      +ER+       +  L  G +  ++I
Sbjct: 245 TARFDAAALRELPPEIVQRLLAGEIARLAPLAPLRLERLERAARRLVAALADGAKLRLTI 304

Query: 305 GRVVIDRRANFLWITRA 321
             +++D +   + +  A
Sbjct: 305 ADLLLDAQGAHVTLRPA 321


>gi|262380273|ref|ZP_06073428.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164]
 gi|262298467|gb|EEY86381.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164]
          Length = 454

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 126/312 (40%), Gaps = 23/312 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +         L+  SGG DSM LL  + ++   R        AI VDH L+  ++D   +
Sbjct: 24  LEQFPPETSFLIGCSGGMDSMLLLYFMAALCPGR------IRAIYVDHQLQAQSRDWGIH 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V   C +L +   V     +     L   AREARY    +H K+    +++ AH   DQ 
Sbjct: 78  VQAECMKLDVPCIVQPVHVNA--GNLERQAREARYQAYHQHIKS--GEVLVLAHHQQDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +R        G+      D       + I RP L   RE I  +  Q NIS+ +DP
Sbjct: 134 ETVLLRLFSGTGISGLSAMKQLDQR---HEMPIWRPMLSLSREQICQWAEQLNISFIDDP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN +  ++R   R  +  + L + + KM++       +      ++ + L   +++    
Sbjct: 191 SNNNTHYDRAWCRTMLWPL-LASRFSKMQQAVTRTASLMQDADEILQEVLQEDLKNCGNA 249

Query: 253 SQDILN----IDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIG 305
            Q  L     +       LL  SA + G  I  P +  +ER+   ++  K+  +  +   
Sbjct: 250 QQLDLARLKLLSKPRQRQLL--SAWMKGEGIYRPAFEMVERIQHEVIAAKADAQAALHWN 307

Query: 306 RVVIDRRANFLW 317
           +    R    L+
Sbjct: 308 KYYYVRYHGQLY 319


>gi|294789627|ref|ZP_06754861.1| tRNA(Ile)-lysidine synthase [Simonsiella muelleri ATCC 29453]
 gi|294482428|gb|EFG30121.1| tRNA(Ile)-lysidine synthase [Simonsiella muelleri ATCC 29453]
          Length = 427

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 105/299 (35%), Gaps = 13/299 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+V  SGG DS+ LL  L    +   F     SAI V H L + A     +  D C   
Sbjct: 16  RIIVGFSGGLDSVVLLHLLAMARTQYVF---DLSAIHVHHNLSQNADKWADFCLDFCENW 72

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I  ++   + +  + G+ AAA     A      +     ++  AH  DDQ+ET ++ + 
Sbjct: 73  KIPLTIKYVQVNSEKLGVEAAA----RAARYAVFREYAGDVLALAHHRDDQVETFFLAAL 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+          +  +L I+RP L   R  I  +     ++   D SN +  F 
Sbjct: 129 RGSGIRGLAAMAENQ---FSGSLKIARPLLHFSRHQIEQYAQHNQLTHITDDSNDNPIFL 185

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R  +R          L    +        + + +A++     + +         +I +  
Sbjct: 186 RNWLRHNGLPNIRQRLPHTDQHIIAAIANLQDELALINEITESDYQHIYQNQKFNIFHWR 245

Query: 261 STLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
                   R    +   Q  L  P   S+      L    R   ++ + V       L+
Sbjct: 246 ELSPARR-RQQLVLFAKQFELGTPRRVSVMNFESILLHHDRAEWTLPQGVAVAYGGVLF 303


>gi|320530147|ref|ZP_08031217.1| tRNA(Ile)-lysidine synthetase [Selenomonas artemidis F0399]
 gi|320137580|gb|EFW29492.1| tRNA(Ile)-lysidine synthetase [Selenomonas artemidis F0399]
          Length = 480

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 126/333 (37%), Gaps = 24/333 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  +     F   L    HILVA SGG DS+ LL  L      R  G    +   V+H +
Sbjct: 22  VEHVLRAHDFFSPL---RHILVACSGGVDSLALLDVLDRF---RRAGGAHITCAHVEHGI 75

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R   ++ + R+V D C+   I  +  +          +  L  +AR  RY  +    +  
Sbjct: 76  RGAASRADARFVKDYCAVQGIPFTCAAVDAPAYARAHRMSLETSARILRYEFLYRAREEC 135

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I TAH  DD  ETV MR  R     G+         + + +  + RP L   R +I
Sbjct: 136 GCDCIATAHHADDLAETVLMRILRGTGTAGLA-------AIREWDGVLLRPLLTATRAEI 188

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNA 233
            S+   R ++   D +N      R R+R  +  I       A+   + +   L  + +  
Sbjct: 189 VSYARARALAPRSDETNEMCDAMRNRIRNKLLPILRADYNPAVGAALVRLSTLAREEDEF 248

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV--SAAICGGQISLPGYRSMERVM 291
           +A L    L     +    +  +  +   L   +LR+    A  GG+     +    R +
Sbjct: 249 IAELSADALRRAEDAGGLSTAVLCGLHPALQRRVLRLYWQKATAGGKDFSYLHEEQMRSL 308

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
           +F++   +  +  G   + +    +   + ++N
Sbjct: 309 IFVRGVAQIDMPHGYTAVCQYGRLILKKKEIQN 341


>gi|119356415|ref|YP_911059.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides DSM 266]
 gi|119353764|gb|ABL64635.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeobacteroides DSM 266]
          Length = 325

 Score =  196 bits (499), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 134/332 (40%), Gaps = 30/332 (9%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +E +R  +R LV    H+L+AVSGGSDSM LL    ++   R     + SA+  +  L
Sbjct: 7   KFLEQIR--IRQLVSKEDHVLLAVSGGSDSMALLHLFCAI---RRAVPCRISAVHCNFRL 61

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E + ++ R+V + C  L +    V +       + +T +   AR  RY          
Sbjct: 62  RAEESDEDERFVQEACLALGVTCYTVGFDTLKMAGEWKTSIEETARILRYRYFDTLLSEH 121

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
              ++ T H  +D  ET+     R  +  G+         +      I RP L   + +I
Sbjct: 122 GMKVVATGHHVNDNAETMLFNLFRGTSLLGL-------RGIRAKRGKIIRPLLLVHKVEI 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNA 233
             ++ +++I++  D +N     +R  +R  +  +      H L   +++  +   ++   
Sbjct: 175 LGYIDEKHIAFRIDATNFGIDPDRNFIRNRIIPLIEERFSHKLLPSLQRLSEQAGELEEF 234

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP----GYRSMER 289
           + +     L       ++ S  +L +   +L  L      +    +         +++++
Sbjct: 235 LELYFENLLADKPG--LSASNGMLEVKDLVLLSLFE-QKEVFKRALREHDVKCDSKTLDQ 291

Query: 290 VMLFLKSGKRGCVSI-GRVVIDRRANFLWITR 320
           ++  LK+     V +  ++V+  +   L I R
Sbjct: 292 LVRLLKTQPGRMVRLSAQIVVLWKGGTLHILR 323


>gi|229588820|ref|YP_002870939.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
           SBW25]
 gi|229360686|emb|CAY47544.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
           SBW25]
          Length = 440

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 104/306 (33%), Gaps = 20/306 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS    +         +       A+ V H L+  A     +   +C  L + 
Sbjct: 25  IAFSGGLDSTV--LLHLLANLANTDTLPPLGAVHVHHGLQTAADAWPAHCQSICDNLGVP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  +  +P   L  AAR+ARY    E   T    +++T    DDQ ET+  R  R  
Sbjct: 83  LRVMRVQV-QPGASLERAARDARYQAFIEV--TGAGQVLLTGQHRDDQAETLLFRLLRGA 139

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +      ++ RP L   R ++ ++  +  + W EDPSN D RF R  
Sbjct: 140 GVRGLSAMPAQRPLAAG---YLVRPLLEVSRAELEAYAEEHQLEWIEDPSNADSRFSRNY 196

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V           +         ++ A  +L    +     +    +   L + S  
Sbjct: 197 LRHRVLPTLTERWPQAVSSLARTAEHLSEAQGLLDELAVMDLQAADQPSAFPWLRLRSLT 256

Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312
           L   LR  +              + R+           +   K   +    +    + R 
Sbjct: 257 L-APLRELSDARQRNALRHWLTPLTRLPDSDHWAGWHSLRDAKDDAQPLWRLADGELHRC 315

Query: 313 ANFLWI 318
              +W 
Sbjct: 316 GQRIWW 321


>gi|319940218|ref|ZP_08014571.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV]
 gi|319810689|gb|EFW07019.1| tRNA(Ile)-lysidine synthase [Streptococcus anginosus 1_2_62CV]
          Length = 425

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 22/267 (8%)

Query: 10  RFFVRSLVYPA------HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + F + L           +L+A+SGG DSM LL  L+     R   +I+     V+H +R
Sbjct: 4   QQFFQMLQKKGYFRHHRKVLLAISGGLDSMTLLDWLYKY---RKKLEIEIYLAHVNHGVR 60

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           E +  E   +  +  +L ++    S+            AR+ RYA   +     N T ++
Sbjct: 61  EESDFEEEKLKKIAKKLGVSIFTSSFSGPFS----EQKARDFRYAFFKKIMLEENCTALV 116

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DDQ ET++MR  R    +   +SGM +   +  N  + RP L  ++ +       
Sbjct: 117 TAHHADDQAETIFMRILRGS--RLFHISGMKEKQKFA-NGELIRPLLSFQKSNFPP---- 169

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             I   ED +N ++ + R R+R     +         K   +L  +++     L      
Sbjct: 170 --IFHFEDWTNQENHYLRNRIRNEYFPLLEQENPQFRKHLIELGTEISQMQDALAYLTKN 227

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRV 270
           +   ++        ++ S LL   L+ 
Sbjct: 228 IVATNLQEFQSQPYSVQSFLLQAYLKK 254


>gi|150865036|ref|XP_001384086.2| hypothetical protein PICST_31371 [Scheffersomyces stipitis CBS
           6054]
 gi|149386292|gb|ABN66057.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 484

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 85/428 (19%), Positives = 155/428 (36%), Gaps = 56/428 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ +LVA+SGG DS+ L   L           I  +AI++DH  R  + +E + V  +  
Sbjct: 23  PSRVLVALSGGVDSICLTYLLSQYSRLYCNNAIAINAITIDHGYRSGSNEEAKAVGKLVE 82

Query: 79  RLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +  + H V   +  K     +     AR  RY    E     +A+ +  AH  +DQLET 
Sbjct: 83  KWGVQHIVKKLEYEKLPTEYSNFEEIARMKRYEKFEETCHQSDASHLFVAHNLNDQLETF 142

Query: 136 YMRSQRDYAEKGM-GLSGMCD-------TILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             R Q + +  G+ GL                   + + RP L   + +I     Q+NIS
Sbjct: 143 IQRLQGNSSIYGLAGLKAQTSLPVQSQLPSAEKERISVIRPLLSFEKSEIIDTCKQQNIS 202

Query: 188 WCEDPSNTD-DRFERVRVRRFVRDIDLHALYLKMK-------KFQDLRVKVNNAVAMLIP 239
           W ED +N D +  +R  +R  +       L    K       K  +   ++   V  L  
Sbjct: 203 WFEDSTNMDINLTKRNYLRHLINVAIPEKLAANDKYISISKAKLIESHEEITEMVESLEE 262

Query: 240 KYLTVHMRS---------------IIAISQDILNIDSTLLF--YLLRVSAAICGGQISLP 282
           K  ++   +                + +S DIL  D+ ++   YL ++       +    
Sbjct: 263 KVDSLDQMAKTNGLLAVDPRNGSLSLKLSNDILTEDNIVIVGKYLYQLLYPFSSIRHYHW 322

Query: 283 GYRSME-----RVMLFLKS-GKRGCVSIGRVVIDRRANFLW------------ITRAVRN 324
            Y  +E     R++ F  S G      +   +I +  N +               + +  
Sbjct: 323 AYAKLERQLVPRIVQFAHSTGDSKLTYLNLTIILKNENGITTLDISRQPILRGALKEIAY 382

Query: 325 LPTLILYPEETTVWDGRYQFQNLSD--SLIQIGPQSYRKADVPSGIPPIIAQRALSSMPS 382
              L     + T++D R+  +  +   +  ++    Y   +  S + P + Q+       
Sbjct: 383 EVDLTAEWSKWTLFDRRFWLRFKTSLFNGCKVTVAPYNHKEHKSKLHPDLEQQKALRFSK 442

Query: 383 KEGGKPLL 390
                P++
Sbjct: 443 DMNNVPVV 450


>gi|15672001|ref|NP_266175.1| hypothetical protein L1002 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|61216729|sp|Q9CJH4|TILS_LACLA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|12722856|gb|AAK04117.1|AE006241_6 cell cycle protein MesJ [Lactococcus lactis subsp. lactis Il1403]
          Length = 423

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 117/272 (43%), Gaps = 20/272 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++   +F +     + IL+A+SGG DSM L   L+ +   +    I+     ++H 
Sbjct: 8   FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDL---KEVLGIELGLAHINHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LRE +K E   + ++ ++L++   V  +     +      AR+ RY    +     N  +
Sbjct: 61  LREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGENYNI 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH   D +ETV MR       +   L G+ D   +     + RP L+  +E++ +  
Sbjct: 117 LLTAHHQGDLVETVLMRQITGRPLR--SLQGIADRQPFA-GGQLIRPLLKFTKEELDA-- 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
                ++ ED +N    + R R+R  +            +   DL  ++  A+A++  K 
Sbjct: 172 ----QTYYEDSTNQGLDYFRNRIRNQLIPELKKENPQFSQSISDLSSEIKKALAVINQKI 227

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273
             + +      S+  ++    L  ++L+   A
Sbjct: 228 SELEIVDEKISSKKFISQTKELQHFILQAFFA 259


>gi|306820236|ref|ZP_07453878.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551733|gb|EFM39682.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 472

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 29/270 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +    +E  +   ++      ILVA+SGG+DS+ LL  L  +  +     +   A  +DH
Sbjct: 5   LVKETVEREKLIEKN----DRILVALSGGADSLCLLDILIRLKDE---YNLTLYAAHLDH 57

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAK 115
            +R   A  +  Y  D C +  +   + +     K  +   G+   AR  RY+++ E  +
Sbjct: 58  MIRGVDAVRDALYCYDFCKKNDVPFFLRAVDVVNKAREEFRGVEETARTERYSMLFEIKQ 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +N   I  AH  DDQ ET+ M+  R    +G  L GM           I RP L   ++
Sbjct: 118 RLNIDKIAVAHNLDDQAETILMKLMRGSGLQG--LRGMDYKR-----DDIIRPLLDIYKK 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +  +  +    D +N +D++ R ++R       L  +    KK+    +K+ +  A
Sbjct: 171 NINKYCEENCLEPRVDKTNFEDKYTRNKIR-------LELIPYIEKKYSANIMKILSRTA 223

Query: 236 MLIPK---YLTVHMRSIIAISQDILNIDST 262
            +I     Y+    R    ++++I N D  
Sbjct: 224 NIIRDDHNYIEKVARENYDLAKNIKNKDEL 253


>gi|241888931|ref|ZP_04776235.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC
           10379]
 gi|241864180|gb|EER68558.1| putative bifunctional protein TilS/hprT [Gemella haemolysans ATCC
           10379]
          Length = 438

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 10/249 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I + +SGG DS+ L   L +   +      +  A  ++H LRE + +E  +V +    
Sbjct: 11  DKIALGLSGGVDSIALFHLLVT---EYKESYKELVAFHINHGLREQSYEEAEFVENFVKN 67

Query: 80  LRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             +                 T     AR+ RY    E +       ++TAH  +DQ+E +
Sbjct: 68  YNVKFYKKELNMKDQIRDSHTSEEMLARKLRYGAFEEMSSLEGGVKLITAHHKNDQVENI 127

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR     +      + M +       L + RP L   + D+  +  + ++ +  D +N 
Sbjct: 128 LMRLLSGRSMD---YNLMIEEKTTIGKLAVYRPLLNVLKADLEQYADKNDLKYYVDSTNF 184

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D  + R  +R  +  +             +      N    L  K L      +I++ +D
Sbjct: 185 DTDYTRNNIRHNIVPLLNDVNAASFDNLINFSSYYQNINTELKHKVLEAKNDYVISLEED 244

Query: 256 ILNIDSTLL 264
            + +D   L
Sbjct: 245 KVELDKEKL 253


>gi|329768244|ref|ZP_08259745.1| hypothetical protein HMPREF0428_01442 [Gemella haemolysans M341]
 gi|328837443|gb|EGF87072.1| hypothetical protein HMPREF0428_01442 [Gemella haemolysans M341]
          Length = 438

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 105/288 (36%), Gaps = 17/288 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I + +SGG DS+ L   L +          +     ++H LRE + +E  +V +    
Sbjct: 11  DKIALGLSGGVDSIVLFHLLVT---KYKESYKELVVFHINHGLREQSYEEAEFVENFVKN 67

Query: 80  LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             +                 T     AR+ RY    E +       ++TAH  +DQ+E +
Sbjct: 68  YNVKFYKKELNMNELARDSHTSEEMLARKLRYEAFEEMSSLEGGVKLITAHHKNDQVENI 127

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR     +      + M +       L + RP L   + ++  +  + N+ +  D +N 
Sbjct: 128 LMRLLSGRSMD---YNLMIEEQTTIGELEVYRPLLSVLKAELEQYADENNLKYYVDSTNF 184

Query: 196 DDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           D  + R  +R  +  +           L      +Q++  ++ N V      Y+      
Sbjct: 185 DTDYTRNNIRHNIVPLLKDVNAASFDNLINFSSYYQNVNTELRNKVLENKADYVIFEAEG 244

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
            +A++++ L  ++    Y L          I     R++  ++  LKS
Sbjct: 245 KVALNKEKLLKNTKEEVYFLLRDILANNFSIFDVKQRALFAIIEDLKS 292


>gi|315660323|ref|ZP_07913176.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus lugdunensis M23590]
 gi|315494612|gb|EFU82954.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Staphylococcus lugdunensis M23590]
          Length = 430

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 21/252 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            HI++AVS G DSM LL AL  +  D      K + + V+H LRE + +E R+    C +
Sbjct: 12  DHIVLAVSTGVDSMCLLYALTHLYRD---TYRKLTCLHVNHGLREESIEEERFFQTYCEQ 68

Query: 80  LRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            ++++ +     S        +   +R+ RY         +NA +++TAH  DDQLET++
Sbjct: 69  HQLSYDIKHLDLSHLVASGKSIQNDSRQMRYQWFDYKMHELNADVLLTAHHLDDQLETIF 128

Query: 137 MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            R     A +  +G+S +     Y     I RP L+  ++DIR F    ++ + ED SN 
Sbjct: 129 YRLFSGRATRSRLGMSYLTAREQYK----ICRPLLQSHKQDIRYFQQVHHVPFYEDCSNH 184

Query: 196 DDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRV-KVNNAVAMLIPKYLTV-HM 246
            +++ R  +R  +         +D+  L LK+K + D ++ ++ N ++  I  Y+ + H 
Sbjct: 185 INKYVRNDIRNRLIPEINDNEQLDVEQL-LKLKAWHDAQMEQLENKISRFIQDYVNMNHN 243

Query: 247 RSIIAISQDILN 258
            ++I   +   N
Sbjct: 244 HTMITCPRTRFN 255


>gi|167772098|ref|ZP_02444151.1| hypothetical protein ANACOL_03472 [Anaerotruncus colihominis DSM
           17241]
 gi|167665896|gb|EDS10026.1| hypothetical protein ANACOL_03472 [Anaerotruncus colihominis DSM
           17241]
          Length = 467

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 125/338 (36%), Gaps = 18/338 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  +   ++  F   L     +  AVSGG+DS+ LL  L + L       +   A  ++H
Sbjct: 1   MNHNARATIEEF-SMLAQGDTVAAAVSGGADSVALLDFLCAQLD----LGLTVRACHLNH 55

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
           CLR E +  + + V  +C++  +A  V               L  AAREARYA   E A+
Sbjct: 56  CLRGEESDRDEQLVRTMCAQYGVALDVRRVDVRALAHTRGLSLETAAREARYAFFEEVAR 115

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           T     I TAHT  D  ETV +   R     G G+ G+C       +  I RP + C R 
Sbjct: 116 THGC-KIATAHTLSDAAETVVLNLAR-----GTGIVGLCGIPPVRGD--IVRPLIGCTRA 167

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
              ++     + +  D +N  D   R  +R  +           ++    +   +     
Sbjct: 168 QTEAYCAAHGLCYVTDSTNLTDSCTRNHIRHNILPQLFRVNPGALEAVGRMTAALRRDAD 227

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
            L         R+      D+  + +       RV AA+  G  +    + +  +   L+
Sbjct: 228 YLSGAAREAGARAARGEGYDLGALRALHPALRARVIAALLEGGGAERSAQRIASIDAMLE 287

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
            G+R  + +G  +       L      +  P   + P 
Sbjct: 288 GGRRRVMQVGPSLYVVADGGLLCLERRKKTPLEPIEPR 325


>gi|312978414|ref|ZP_07790156.1| tRNA(Ile)-lysidine synthase [Lactobacillus crispatus CTV-05]
 gi|310894757|gb|EFQ43829.1| tRNA(Ile)-lysidine synthase [Lactobacillus crispatus CTV-05]
          Length = 417

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 11/247 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +LVA S G DSM LL  L ++    SF      A   DH LR  +  EV  + + 
Sbjct: 14  LKDKRLLVAASAGPDSMALLDMLVNLQKQLSF---TVFAAHFDHQLRADSSYEVEVLQNY 70

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C++ +I      W K+ +PQTG+ AAAREARY  ++  A +     ++TAH  DD LE +
Sbjct: 71  CAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENI 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M       ++     + + RP L   ++++  +  +R I +  D +NT
Sbjct: 131 LLKFIRSGNPEEMNSLQDIGSM---HGVVLLRPLLAYSKQELLEYDQEREIDYVIDSTNT 187

Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIA 251
           +D   R R+R  V  +   +   L     +F +   ++ +     +    TV        
Sbjct: 188 EDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVEPFLGAWR 247

Query: 252 ISQDILN 258
           I  D LN
Sbjct: 248 IKTDNLN 254


>gi|288802304|ref|ZP_06407744.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella
           melaninogenica D18]
 gi|288335271|gb|EFC73706.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella
           melaninogenica D18]
          Length = 456

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 108/280 (38%), Gaps = 29/280 (10%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  ++ F+ S   L   A  LVA+SGG+DS+ LL+ L  +         +  A+  +  L
Sbjct: 2   LNKIKRFIASEHLLQVDALYLVALSGGADSVALLLCLKEL-------GYRVEAVHCNFNL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R E +  + ++  D+C R  I    V +         +  +  AARE RY    +  + +
Sbjct: 55  RGEESLRDEQFCEDLCQRENIPFHKVHFDTQAYADLHKVSIEMAARELRYRYFFQLKEAL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  +D +ET+ +   R     G+         +   N  + RP L   R++I
Sbjct: 115 GANGVCVGHHKEDSVETILINLVRGTGLSGL-------MGIRPRNHDVIRPLLCVTRQEI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
             +L Q+ +S+  D +N  D   R ++R         +      A+        ++   V
Sbjct: 168 EDYLRQQAVSFVTDSTNLIDDVVRNKIRLNVLPQLSEINPSVKDAILTTANHLSEVDAIV 227

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
             ++     K +          S  + N    L   ++R 
Sbjct: 228 QESLKEAFGKAVCFINSVTQVSSNSLSNEPFQLNLSVIRA 267


>gi|256422772|ref|YP_003123425.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588]
 gi|256037680|gb|ACU61224.1| tRNA(Ile)-lysidine synthetase [Chitinophaga pinensis DSM 2588]
          Length = 445

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 136/348 (39%), Gaps = 37/348 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   IE  + F+        +L+AVSGG DS+ +     +          +F+    +  
Sbjct: 7   FKIFIEKEQLFM----PDQSLLLAVSGGVDSVVMAHLFKA-------AGYRFAIAHCNFQ 55

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKT 116
           LR + +  +  + +D+  RL++    V +         +  +  AARE RY  + +  + 
Sbjct: 56  LRGDESVRDESFAADLARRLQVTFHQVRFDTEAYTESKRVSIQVAARELRYEWLEQTREQ 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              + I+TAH   D +ET+ M   +       GL G     +      + RP L   +E+
Sbjct: 116 GGYSYIVTAHHMQDSVETLLMNLSKGTGI--AGLHG-----ILPKQGKLLRPLLFAEKEN 168

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVK 229
           + ++  + +I + ED SN   ++ R   R  V  +   A       +   +++F++  + 
Sbjct: 169 LIAYAAEHHIPYVEDSSNLTVKYTRNFFRHKVIPVMQEANPGTVVNIASSIERFREAELL 228

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
            N A+   I + +T    + + I    L   + L       + A    +        + +
Sbjct: 229 YNEALQRHIKRLVTQKGNTYM-IPVLKLQKTTPLQ------TVAWEIFRRYGCTAAQLPQ 281

Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
           V+  L SG    V  G   I R   +L IT  V      I+  +E  V
Sbjct: 282 VLELLNSGSGKMVETGSHRIIRDRQWLLITPLVEEQAATIVIEKERGV 329


>gi|302878626|ref|YP_003847190.1| tRNA(Ile)-lysidine synthetase [Gallionella capsiferriformans ES-2]
 gi|302581415|gb|ADL55426.1| tRNA(Ile)-lysidine synthetase [Gallionella capsiferriformans ES-2]
          Length = 449

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 121/331 (36%), Gaps = 17/331 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L   + IL+ +SGG DS+     LH +         K SA+ V H +   A     +  
Sbjct: 23  QLPEGSSILLGLSGGVDSVV---LLHLLHHLAPRFSWKLSALHVHHGISRNADSWAEFCR 79

Query: 75  DVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +C R +I   +           G+ AAAR  R+A             +  AH  DDQ+E
Sbjct: 80  LLCERHQIPLCIERVDIAPLRSQGIEAAARRLRHAAFD----AQRCDFVALAHHADDQVE 135

Query: 134 TVYMRSQRDYAEKGMGLSG-MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T++++  R    KG      +           + RP L+  R++I ++  ++ + W ED 
Sbjct: 136 TLFLQLLRGAGVKGASAMPVLSQPKKTQRTHRLVRPLLQFTRDEILTYAAEQRLEWVEDE 195

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN D+R+ R  +R  +            +           A ++L          ++I  
Sbjct: 196 SNADERYPRNFLRHRLLPELATQFPSYRETLTRSTSHFAEAASLLDELARIDAAGALIDA 255

Query: 253 SQD---ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGR 306
                 +  +       LLR      G    +P    ++ ++  L   +     C+  G 
Sbjct: 256 CLSVTALQALSHARAKNLLRYFFDQQG--APMPHAAKLDDLLQQLCSAREDAALCIDFGG 313

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTV 337
             + R    +++ +A  +   ++ +  E  +
Sbjct: 314 WQVRRHQGRVYVLQAFASFDGVLQWQGEAIL 344


>gi|169335539|ref|ZP_02862732.1| hypothetical protein ANASTE_01954 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258277|gb|EDS72243.1| hypothetical protein ANASTE_01954 [Anaerofustis stercorihominis DSM
           17244]
          Length = 464

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 164/402 (40%), Gaps = 27/402 (6%)

Query: 4   SPIESVRFFV--RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             ++ V+ F+   +L+     +++A+SGGSDS+ LL  L+++ +D  F      A  ++H
Sbjct: 7   KIVKKVKDFILKNNLIKNKDKVMIALSGGSDSVCLLHILNTLKNDMGF---SLYAFHLNH 63

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
            +RE AK + ++V D+C    +   + S      +     GL    R+ RY LI++  K 
Sbjct: 64  NIREEAKRDEKFVLDLCKTYDVPLFLESEDMPALHEDSSLGLEEIGRKKRYELINKIMKE 123

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +     TAH   D  E++ +   R    +G+         +   N  I RP L   +E+
Sbjct: 124 NHIDKAATAHHLLDHSESMILNMVRGSGIRGL-------RGISVKNDNIIRPILNLTKEE 176

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNA 233
           I  ++ +  + +  D +N D  + R  +R  +          +Y    +   +  +V++ 
Sbjct: 177 ILCYIEENELEYVTDVTNFDTDYSRNNIRHNILPHLEEINDNVYNHFFELSSVAGEVDDL 236

Query: 234 VAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
           +  L  +   +   S + IS +D  ++   +   +L       G +  +        V L
Sbjct: 237 LNELASEVNIIKEDSKVYISLKDYYSLHIAVKKQILFNMLNQLGIKKDINSRAINNIVDL 296

Query: 293 FLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
             K+     +++   +V  RR + L+     ++    I +  +      +++ +  +D +
Sbjct: 297 IEKNNTSFEINLINNIVAKRRYDKLYFEYLSKDKRESINWEVDNK---NKFEIK-YNDII 352

Query: 352 IQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPF 393
           I++  +     +           R    + +++ G    +PF
Sbjct: 353 IKLEKKDVLDKNSEDKYVDYDKIRGKLFLRTRKDGDK-FSPF 393


>gi|147669868|ref|YP_001214686.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. BAV1]
 gi|289433082|ref|YP_003462955.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. GT]
 gi|146270816|gb|ABQ17808.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. BAV1]
 gi|288946802|gb|ADC74499.1| tRNA(Ile)-lysidine synthetase [Dehalococcoides sp. GT]
          Length = 476

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 23/299 (7%)

Query: 7   ESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  +++          IL+AVSGG DS+ +L  +H +  +  F         ++H LR
Sbjct: 9   ERVSKYIKKQGLVSAGDEILLAVSGGPDSVCMLYIMHKLSREMGF---SLRLAHLNHGLR 65

Query: 64  -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            E +  +  YV+++ S L +        V    ++    L  AARE RYA +   A    
Sbjct: 66  AEESDRDAAYVTELASALGLPLCQQKVSVKAYQAEHHLSLEEAAREMRYAFLCRTAAEFG 125

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLN-LWISRPFLRCRRED 176
           +  +   HT DD +ETV +   R    +G+ GL  + +  +     L + RP L   R +
Sbjct: 126 SAAVAVGHTLDDNIETVMLHLVRGSGTRGLQGLRPVLNRTIAGAGCLRVIRPLLCLGRAE 185

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAV 234
            + +  +  +   +D +N      R R+R  V    L  L      F++  LR       
Sbjct: 186 TQVYCREAGLLPRQDITNLSTEPLRNRIRLEV----LPLLKTINPAFEETILRTAFIAGE 241

Query: 235 AMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYL---LRVSAAICGGQISLPGYRSMER 289
            M +   +T  M++ + I Q D+L I+   +  L   L+ +      +  L G + +E 
Sbjct: 242 EMALLDEVTSQMKAELVIRQDDVLMIEKIEMQRLHPALKRNLLRQMMEELLGGLKDIEA 300


>gi|294101776|ref|YP_003553634.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM
           12261]
 gi|293616756|gb|ADE56910.1| tRNA(Ile)-lysidine synthetase [Aminobacterium colombiense DSM
           12261]
          Length = 470

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 109/312 (34%), Gaps = 32/312 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLR 81
           +VAVSGGSDS+ LL         +           ++H +RE ++ ++  +V  +     
Sbjct: 41  VVAVSGGSDSVALLWFFVQFWPGK------VIVAHLEHGIRERSSIEDAAFVKKLAEAWG 94

Query: 82  IAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
               +      +       L   AR  RY    + A +  AT++   HT DD  ET+   
Sbjct: 95  CEFEIEHVVVPRLLRKGESLEEGARRVRYDFFEQIAASEGATVVALGHTADDIAETLLFN 154

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G+         + ++     RP     RED+R  L  R I W EDP+N D  
Sbjct: 155 LCRGSGPFGL-------VGIPEVRGQFIRPLSGWWREDLRRLLQARGICWREDPTNLDTT 207

Query: 199 FERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           + R R+R  +  +    +    ++         Q+ R +      +L+         S+ 
Sbjct: 208 YVRNRIRHEIIPLLERTINSSTRQHFVDFAQDMQEFRRREEKQGELLVQWGKENVPFSMY 267

Query: 251 AISQDILN-IDSTLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCVSIGRV 307
             +   +  +      + +R      G  +SL       +  ++  LK+  R        
Sbjct: 268 GTTLSFVRSLSEQEQAWFIRA----IGRNLSLKTLTRNRLTSLIATLKTSGRWLFQWENK 323

Query: 308 VIDRRANFLWIT 319
                 +   + 
Sbjct: 324 AFICCGSGFMVW 335


>gi|160947239|ref|ZP_02094406.1| hypothetical protein PEPMIC_01172 [Parvimonas micra ATCC 33270]
 gi|158446373|gb|EDP23368.1| hypothetical protein PEPMIC_01172 [Parvimonas micra ATCC 33270]
          Length = 457

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 108/310 (34%), Gaps = 22/310 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+AVSGG DSM +L   +    +    K+       +H LR+ A  + ++V   C +  
Sbjct: 19  VLLAVSGGKDSMIMLDLFNYFKYEL---KLNLVVCHFNHSLRDDADRDEKFVKTQCEKYG 75

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +             ++ +      AR  RY    E  +  N   I TAH  +D  ETV M
Sbjct: 76  LKFYSKKEDVLLYSNENKLSTEEGARFLRYKFFDEVKRIENLEYIATAHNKNDLAETVIM 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+         +      + RP L   R++I  ++ + NI + ED +N ++
Sbjct: 136 RILRGTGINGL-------IGIQSERGDLIRPILNFSRDEIEKYIEENNIPFVEDKTNFEE 188

Query: 198 RFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            + R ++R               L A+        D        +A         +   I
Sbjct: 189 LYLRNKIRLNLFPILKNEYNPRILDAISRLSNIAFDYSTISREYIASKEGLLWEFNKEKI 248

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           +   + +     +    + R              Y+ +E +   + S     + I  VV 
Sbjct: 249 LVYIEKLKLQSRSFRNIMYREFFEFISKDPDGINYKIIEEIDNLIFSKTGKYIEIKNVVF 308

Query: 310 DRRANFLWIT 319
               + L I 
Sbjct: 309 KIEYDKLLIY 318


>gi|212694903|ref|ZP_03303031.1| hypothetical protein BACDOR_04440 [Bacteroides dorei DSM 17855]
 gi|237727139|ref|ZP_04557620.1| tRNA(Ile)-lysidine synthase [Bacteroides sp. D4]
 gi|265750423|ref|ZP_06086486.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212662463|gb|EEB23037.1| hypothetical protein BACDOR_04440 [Bacteroides dorei DSM 17855]
 gi|229433995|gb|EEO44072.1| tRNA(Ile)-lysidine synthase [Bacteroides dorei 5_1_36/D4]
 gi|263237319|gb|EEZ22769.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 434

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 69/336 (20%), Positives = 122/336 (36%), Gaps = 42/336 (12%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF   I+      +       +LVA+SGG+DS        ++L           A   + 
Sbjct: 1   MFHWNIQKYIEEKQLFTLHDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR E +  + R+V+++C  L +A  V  +      S+    +  AARE RY    +  K
Sbjct: 54  HLRGEESDRDERFVNELCKGLGVALHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRK 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                +I  AH  DD +ET  +   R     G+         +   N  I RP L   R+
Sbjct: 114 ERGGAVIAVAHHRDDSVETFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQ 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228
           DI  +L      +  D +N  D + R ++R       R +      ++    ++  D+ +
Sbjct: 167 DILDYLRCLRQGYVTDSTNLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSL 226

Query: 229 KVNNAVAMLIPKYLTVHMRSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             N  +     + +      +I  + ++  +  + LLF +L              G+ S+
Sbjct: 227 IYNKEIEAGKERVMEKSGHILISRLMEE--SAPAALLFEIL-----------HPLGFNSV 273

Query: 288 ER--VMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
           +   V   L +            + R    L I R 
Sbjct: 274 QAGDVFRSLSAQSGKRFVSAGWEVLRDRTELIIRRR 309


>gi|91788722|ref|YP_549674.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666]
 gi|91697947|gb|ABE44776.1| tRNA(Ile)-lysidine synthetase-like protein [Polaromonas sp. JS666]
          Length = 326

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 65/290 (22%), Positives = 113/290 (38%), Gaps = 16/290 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
            + S        VA+SGG+DS  LL+              +  A+ + H L+  A D  R
Sbjct: 13  ALASFSPGLPFAVALSGGADSTALLVGCAEKWPG------QVRAVHIHHGLQAAADDFER 66

Query: 72  YVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL----IMTAH 126
           +   +C++L +  +V   +    P      AAR+ARYA     A+   A      I  A 
Sbjct: 67  HCQALCAQLNVPLAVKRVQARHAPGESPEDAARKARYAAFGAVAREEWAQHAIKDIAIAQ 126

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ +   R     G+              +   RP L      +R++L++R +
Sbjct: 127 HADDQVETMLLALSRGAGLPGLAAM---PARWERDGIVYHRPLLAVPGALVRAWLVERGL 183

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
            W EDP+NTD+RF R R+R  +      A     + F         A A+L+   +    
Sbjct: 184 PWVEDPTNTDERFTRNRIRARLLPALADAFPQFRETFARSARHAAQAQALLVE--VAQQD 241

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
            + + +   I  +          V       Q + P    +++++  + +
Sbjct: 242 LATVGLPPAITALQGLSQPRQANVLRHWLQLQQATPSAAQLDQLLTQVAA 291


>gi|213404712|ref|XP_002173128.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces
           japonicus yFS275]
 gi|212001175|gb|EEB06835.1| mitochondrial tRNA(Ile)-lysidine synthetase [Schizosaccharomyces
           japonicus yFS275]
          Length = 462

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 149/392 (38%), Gaps = 46/392 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + S+R F+  L       VAVSGG DSM L+  L   +    + K +  A  V+H LR+ 
Sbjct: 9   VNSLRSFIPYLRNGTA-GVAVSGGVDSMCLVHLLRETMLQYLWPK-RIHAFIVEHGLRKE 66

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLI 122
           + ++          + I  +++   +      Q+ +   AR  RY  +++         +
Sbjct: 67  SAEDAVITRRRLLDMGIPSTILPLNHKWDLSKQSKIETIARVLRYRTLAKACLRHKIYGL 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--------NLWISRPFLRCRR 174
            TAH  +DQ ET+ MR  +       GL G+                 + + RPFL   +
Sbjct: 127 FTAHHLNDQYETIVMRLLQRKPGTWGGLCGIRKVAPLPESEDIYGADQILLLRPFLSYPK 186

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRF-VRDIDLHALYLKMKKFQDLRVKVNN 232
                  +++ + WCED SN D +   R  +R   V  +    +    + FQ+L      
Sbjct: 187 T-----CIKKKVQWCEDKSNKDIQLTVRNAIRAVGVDTLVSTEIASISQTFQELEDHSQK 241

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILN---------IDSTLLFYLLRVSAAICGGQISLPG 283
           +V  L+ +   ++ ++I +    I           I +  L YL+ +       +     
Sbjct: 242 SVHSLLKQCSCLYFKAIHSFQMQIPCIIMDTSSDFIKTEFLMYLIDIITPKTKKK----- 296

Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDRRAN------FLWITRAV-----RNLPTLILYP 332
            RS+E +   L +  +  ++ G        +       L+ITR           T +L  
Sbjct: 297 RRSIEGISKRLWNSTKP-LTAGGCSFTLTKDDNCSSYILFITREQFSKRDAQKATFVLKN 355

Query: 333 EETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
             T +WD R+  Q   DS      +  +  D+
Sbjct: 356 GSTILWDNRFWVQVKYDSAKSFTIRPLKSGDI 387


>gi|325698021|gb|EGD39902.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK160]
          Length = 425

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 112/298 (37%), Gaps = 26/298 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +L+AVSGG DSM LL  L     +     I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLIAVSGGLDSMTLLQLLIDSQKEL---DIELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  +        AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGNFS----ENAARQFRYDFFEKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP     + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLFTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  + +D    +   +       
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPNLEKENPQIKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
             +     I   Q        +  +LL+       G       +  E V+  L++   
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKAN 277


>gi|262374859|ref|ZP_06068093.1| tRNA(Ile)-lysidine synthetase [Acinetobacter lwoffii SH145]
 gi|262309872|gb|EEY91001.1| tRNA(Ile)-lysidine synthetase [Acinetobacter lwoffii SH145]
          Length = 458

 Score =  195 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 70/316 (22%), Positives = 118/316 (37%), Gaps = 26/316 (8%)

Query: 12  FVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           F++ L         L+  SGG DS      +  +         K  AI VDH L+  +  
Sbjct: 20  FLKQLQDFPAETKFLIGCSGGVDS------MLLLHLMFFLCSEKIRAIYVDHQLQSISSA 73

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
              +V   C +L I   +     +     L   AR +RY    +H +     +++ AH  
Sbjct: 74  WGTFVQQQCRQLNIPCIIQPVNVA--SGNLEQQARNSRYQAYLQHLQA--DEILVLAHHQ 129

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            DQ ET+ +R        G+      D      NL I RP L   RE I  +    N+  
Sbjct: 130 QDQAETLMLRLLSGAGIDGLAAMKQIDIRE---NLTIWRPLLNISREQICQWASDLNVQN 186

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            EDP+N D  ++R   R+ +  + L   Y KM+       ++      ++ + L   + S
Sbjct: 187 IEDPTNADTYYDRAWARQTLWPV-LSERYPKMQAALVRTSELMQDAQDILQEVLQQDLAS 245

Query: 249 IIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGC 301
               +Q      L +  +    LL  SA + G +   P    +ER+   +++ K   +  
Sbjct: 246 CGTETQLDLGKFLQLSKSRQRQLL--SAWMKGKEQYRPSLAMVERLQREVIYAKQDAQAA 303

Query: 302 VSIGRVVIDRRANFLW 317
           +        R    L+
Sbjct: 304 LYWQGFYYVRYQQQLY 319


>gi|168334111|ref|ZP_02692324.1| tRNA(Ile)-lysidine synthetase [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 450

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 101/243 (41%), Gaps = 18/243 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VAVSGG+DSM LL  L+    +++F  I      V+H +R  A+ ++ +V +      
Sbjct: 26  IVVAVSGGADSMMLLDYLYR---NKNFLYISIRIAHVNHKMRVDAEKDMEFVKNYAKERE 82

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   V+        +K +    AA R+ RY            T I TAHT +DQ ETV M
Sbjct: 83  IICDVLECDIEALAAKTKMSSEAAGRKVRYEFFESL----PHTKIATAHTANDQAETVLM 138

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    KG  LSG+           I RP L   RE++  +     I +  D +N  +
Sbjct: 139 RFLRGSDVKG--LSGINAKRE-----NIIRPILCITREEVEFYCNHHGIEYKTDHTNFLE 191

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R ++R  +       +   +        K+       +  Y      SII  S+D  
Sbjct: 192 IYTRNKIRLSLIPYITKNINANIMHTLIEHSKLYREEEEFLSAYTKKIYDSIILKSEDSY 251

Query: 258 NID 260
            I+
Sbjct: 252 EIN 254


>gi|238650509|ref|YP_002916361.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic]
 gi|259533756|sp|C4K162|TILS_RICPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|238624607|gb|ACR47313.1| tRNA(Ile)-lysidine synthetase [Rickettsia peacockii str. Rustic]
          Length = 533

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 18/237 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGGSDS+ LL  L ++ ++++   I+   ISVDH LRE +K E  Y+ ++ + L   
Sbjct: 24  IAVSGGSDSVALLY-LANIWAEKN--NIELFVISVDHNLREQSKQETHYIQNISNSLNRK 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H  +S+ +    + L   ARE RY L++     ++  +++TAH  DD +E   +R +R+ 
Sbjct: 81  HYSLSFDHQNNFSNLQERAREGRYDLMTNLCLELDILVLLTAHHEDDYVENFCLRLERNS 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV- 202
              G+  S +     +  N+ I RP     + ++  +L+  NI W ED SN+ D++ R  
Sbjct: 141 GIFGLSSSNIN----WYNNIHIIRPLYNIPKSELVEYLVSHNIKWFEDESNSSDKYRRNV 196

Query: 203 ----------RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
                      +R F + +         ++       V     +  P  LTV  R +
Sbjct: 197 IRQKLAKGADYIRHFSKPVYREEFKGDTERSTAAYTSVGEEALLRGPVKLTVSSRGL 253



 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 73/211 (34%), Gaps = 21/211 (9%)

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283
            +L   +  AV +    +  + +      S       + +   ++     I  GQ     
Sbjct: 332 PELISAIAEAVKIFEYGFAFLDLVKFDKFS-------NEVKVQIINFLLIIISGQSRAAR 384

Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV-RNLPTLILYPEETTVWDGRY 342
           + S+E ++  +        ++   +I R  N L I R   + LP   +  +++ +WD R+
Sbjct: 385 FYSVEPILKLITQDVNFKNTLHGCIIKRIQNELLIYREFGKKLPESKILLDKSVIWDNRF 444

Query: 343 QFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA-PFSRFMTK-- 399
                 ++       ++        I   +    L ++  K     LL  P  + + K  
Sbjct: 445 CITKNQETPNCF--VTHLSLKDYKIIKKQLDLEPLKNLSCKNHNAVLLTLPIIKILEKVI 502

Query: 400 -------FDLPVAYAFSISFGKVFIPRLPFF 423
                  +D  + + F +SF   F+ R   F
Sbjct: 503 AIPHISYYDNDM-WNFEVSFSPNFVSRFTHF 532


>gi|114570963|ref|YP_757643.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10]
 gi|114341425|gb|ABI66705.1| tRNA(Ile)-lysidine synthetase [Maricaulis maris MCS10]
          Length = 450

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 140/361 (38%), Gaps = 20/361 (5%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +++VR  +  L     + +A SGG DS+ LL+                  ++VDH
Sbjct: 1   MVARAVQTVRSALGRLAGEGPLGIACSGGGDSLALLVIASDWARANGR---SLQVLTVDH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR+++ DE  +V+ +  RL    + ++W +++P  GL A AR+AR+ L++   + +  T
Sbjct: 58  GLRKSSADEANHVAAMADRLGWPCTCLTWDDARPGAGLQARARDARHRLLARACRDLGLT 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDI 177
            +  AHT DDQ ETV++R     + +   +              +L + RP L   R ++
Sbjct: 118 ELALAHTRDDQSETVWLRLAAGGSWRSAAVMSDRAPSPVWPEGRDLDLLRPCLDVTRAEL 177

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-----KKFQDLRVKVNN 232
           R  L    I W +DPSN DDR+ RVR R  +  +                 + +      
Sbjct: 178 RRVLSDAGIDWVDDPSNEDDRYARVRARGDLGLLSEAGFQPDRFAELGALLRPVHAAERR 237

Query: 233 AVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
           A        L VH    ++I +     I   +   LL        GQ   P    +  + 
Sbjct: 238 AAWHCGQAALVVHAWGGVSIDRAAWSRIVPAVRLTLLDALVMAVSGQSVSPSRGRLVPLD 297

Query: 292 LFLKSGKRGC--------VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQ 343
             + +              +   V + R    +        +       +   V+DGR++
Sbjct: 298 AAILASTSVTGCGVQVLAGTAVTVWLIRDRGAVLGRVDHDGIDPWTDQSDVCRVFDGRFE 357

Query: 344 F 344
            
Sbjct: 358 I 358


>gi|239816062|ref|YP_002944972.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110]
 gi|239802639|gb|ACS19706.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus S110]
          Length = 325

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 123/317 (38%), Gaps = 31/317 (9%)

Query: 19  PAHI--LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           PAH+   V  SGG+DS  LL A  S          +  A  V H L+  A D  R+ + V
Sbjct: 14  PAHLPLAVGFSGGADSTALLAACASAWPG------QVLAFHVHHGLQAAADDFERHCAAV 67

Query: 77  CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINA----TLIMTAHTFDDQ 131
           C RL +  +V        Q      AAR ARY   +  A+   A      I+  H  DDQ
Sbjct: 68  CERLGVPLAVHRVDARHAQGDSPEDAARRARYDAFAAMARMDTALGAIESIVLGHHADDQ 127

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ +   R     G+         +    L I RP L     DIR++L   ++ W ED
Sbjct: 128 VETLLLALSRGAGLPGLAAMPAH---VRRNGLDIYRPLLAVPGADIRAWLKSVDLPWIED 184

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           P+N D+R+ R R+R  +    L AL     +F+    +     A        +  + ++ 
Sbjct: 185 PTNEDERYTRNRIRAVL----LPALARTFPQFRATFARSIGHAAQAQELLGELAAQDLVV 240

Query: 252 I-----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----GKRGCV 302
           +        +  +       +LR       G    P    +++++  +++    G R  +
Sbjct: 241 VGNPPRIAALQALSRARQANVLRHWLMQAHGCA--PSAAQLDQLLDQVRACTTRGHRIHL 298

Query: 303 SIGRVVIDRRANFLWIT 319
            +      RR + L   
Sbjct: 299 KVANGFAQRRGDLLHWY 315


>gi|295692143|ref|YP_003600753.1| cell cycle protein [Lactobacillus crispatus ST1]
 gi|295030249|emb|CBL49728.1| Cell cycle protein [Lactobacillus crispatus ST1]
          Length = 417

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 11/247 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +LVA S G DSM LL  L ++    SF      A   DH LR  +  EV  + + 
Sbjct: 14  LKDKRLLVAASAGPDSMALLDMLVNLQKQLSF---TVFAAHFDHQLRADSSYEVEVLQNY 70

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C++ +I      W K+ +PQTG+ AAAREARY  ++  A +     ++TAH  DD LE +
Sbjct: 71  CAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENI 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M       ++     + + RP L   ++++  +  +R I +  D +NT
Sbjct: 131 LLKFIRSGNPEEMNSLQDIGSM---HGVVLLRPLLAYSKQELLEYDQEREIDYVIDSTNT 187

Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIA 251
           +D   R R+R  V  +   +   L     +F +   ++ +     +    TV        
Sbjct: 188 EDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVEPFLGAWR 247

Query: 252 ISQDILN 258
           I  D LN
Sbjct: 248 IKTDNLN 254


>gi|227878371|ref|ZP_03996326.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus crispatus
           JV-V01]
 gi|256844414|ref|ZP_05549900.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256849198|ref|ZP_05554631.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus crispatus MV-1A-US]
 gi|262047214|ref|ZP_06020172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus crispatus MV-3A-US]
 gi|227862050|gb|EEJ69614.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus crispatus
           JV-V01]
 gi|256613492|gb|EEU18695.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256713974|gb|EEU28962.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus crispatus MV-1A-US]
 gi|260572459|gb|EEX29021.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus crispatus MV-3A-US]
          Length = 417

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 11/247 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +LVA S G DSM LL  L ++    SF      A   DH LR  +  EV  + + 
Sbjct: 14  LKDKRLLVAASAGPDSMALLDMLVNLQKQLSF---TVFAAHFDHQLRADSSYEVEVLQNY 70

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C++ +I      W K+ +PQTG+ AAAREARY  ++  A +     ++TAH  DD LE +
Sbjct: 71  CAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENI 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M       ++     + + RP L   ++++  +  +R I +  D +NT
Sbjct: 131 LLKFIRSGNPEEMNSLQDIGSM---HGVVLLRPLLAYSKQELLEYDQEREIDYVIDSTNT 187

Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIA 251
           +D   R R+R  V  +   +   L     +F +   ++ +     +    TV        
Sbjct: 188 EDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVEPFLGAWR 247

Query: 252 ISQDILN 258
           I  D LN
Sbjct: 248 IKTDNLN 254


>gi|24378543|ref|NP_720498.1| putative cell-cycle protein [Streptococcus mutans UA159]
 gi|61217358|sp|Q8DWM9|TILS_STRMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|24376391|gb|AAN57804.1|AE014853_11 putative cell-cycle protein [Streptococcus mutans UA159]
          Length = 423

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 112/266 (42%), Gaps = 24/266 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  ++  +FF        +IL+AVSGG DSM LL  LH         +I+ +   V+H  
Sbjct: 7   LKYVQEKKFFETHY----NILIAVSGGVDSMNLLHFLHIYQKKL---QIRIAVAHVNHKQ 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A +E  Y+ +      I      +K           AR+ RY       K    T +
Sbjct: 60  RPQADEEEIYLKNWARDNHIPFYTAVFKGIFS----EKKARDFRYTFFKNIMKEHGYTAL 115

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAH  +DQ ETV++R  R    + +  +G+ +   +  N  + RPFL+  ++++     
Sbjct: 116 VTAHHANDQAETVFLRLLRGSRLRYL--TGIKEIQEFG-NGQLIRPFLKFHKKELP---- 168

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             NI   +D SN  D + R R+R       L  L  +  K     ++++    +L   + 
Sbjct: 169 --NIFHFDDDSNQGDSYLRNRIRNH----YLPILTQENPKLSQHLIQMSEETNLLFKAFS 222

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLL 268
            +  +  I   Q   +    + ++LL
Sbjct: 223 DLTSQLDIQDCQIFRSQSEAIQYFLL 248


>gi|73749106|ref|YP_308345.1| PP-loop family protein [Dehalococcoides sp. CBDB1]
 gi|123620029|sp|Q3ZYX5|TILS_DEHSC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|73660822|emb|CAI83429.1| PP-loop family protein [Dehalococcoides sp. CBDB1]
          Length = 471

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 125/299 (41%), Gaps = 23/299 (7%)

Query: 7   ESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  +++          IL+AVSGG DS+ +L  +H +  +  F         ++H LR
Sbjct: 4   ERVSKYIKKQGLVSAGDEILLAVSGGPDSVCMLYIMHKLSREMGF---SLRLAHLNHGLR 60

Query: 64  -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            E +  +  YV+++ S L +        V    ++    L  AARE RYA +   A    
Sbjct: 61  AEESDRDAAYVTELASALGLPLCQQKVSVKAYQAEHHLSLEEAAREMRYAFLCRTAAEFG 120

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLN-LWISRPFLRCRRED 176
           +  +   HT DD +ETV +   R    +G+ GL  + +  +     L + RP L   R +
Sbjct: 121 SAAVAVGHTLDDNIETVMLHLVRGSGTRGLQGLRPVLNRTIAGAGCLRVIRPLLCLGRAE 180

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAV 234
            + +  +  +   +D +N      R R+R  V    L  L      F++  LR       
Sbjct: 181 TQVYCREAGLLPRQDITNLSTEPLRNRIRLEV----LPLLKTINPAFEETILRTAFIAGE 236

Query: 235 AMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYL---LRVSAAICGGQISLPGYRSMER 289
            M +   +T  M++ + I Q D+L I+   +  L   L+ +      +  L G + +E 
Sbjct: 237 EMALLDEVTSQMKAELVIRQDDVLMIEKIEMQRLHPALKRNLLRQMMEELLGGLKDIEA 295


>gi|320547724|ref|ZP_08042009.1| tRNA(Ile)-lysidine synthetase [Streptococcus equinus ATCC 9812]
 gi|320447799|gb|EFW88557.1| tRNA(Ile)-lysidine synthetase [Streptococcus equinus ATCC 9812]
          Length = 421

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 24/267 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +  I+   +F +       +L+AVSGG DSM LL  L+    +     I+     V+H 
Sbjct: 5   LVKEIQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIYQKNLG---IEIGIAHVNHK 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E  Y+ D  +  +I   V  +  +         AR+ RY    +     N T 
Sbjct: 58  QRVESDIEENYLRDWANEYQIPIYVSYFLGNFS----EKTARDFRYHFFKQIMNEQNYTA 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ET++MR  R    +   LSG+     +  N  + RPFL   ++D+    
Sbjct: 114 LVTAHHADDQAETIFMRLLRGSRLR--HLSGIQAVSPFA-NGELIRPFLAYFKKDLPD-- 168

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN    F R R+R     I    L  +  KF+    ++      L   +
Sbjct: 169 ----IFHFEDDSNQSLEFLRNRIRNRYIPI----LEEENPKFKQGLRQLGEESEQLFQAF 220

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLL 268
             +     +      L     +   LL
Sbjct: 221 QDLTQNIDVTNCSQFLAQSQAVQTILL 247


>gi|327467727|gb|EGF13221.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK330]
          Length = 425

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 117/303 (38%), Gaps = 26/303 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----QKVLVAVSGGLDSMTLLQLLVDYQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  ++ E + +  +  +L +     S+  S         AR+ RY    +  +  + T 
Sbjct: 59  QRPESEQEEKALVKIAEQLGVKIFTSSFSGSF----SENVARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     I   Q        +  +LL+       G       +  E V+  L++     
Sbjct: 222 SHLTRDLDIENVQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKTNYQ 279

Query: 302 VSI 304
            ++
Sbjct: 280 HTL 282


>gi|260592846|ref|ZP_05858304.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319]
 gi|260535216|gb|EEX17833.1| tRNA(Ile)-lysidine synthase [Prevotella veroralis F0319]
          Length = 461

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 132/373 (35%), Gaps = 48/373 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L+ I+      + L   AH LVA+SGG+DS+ LL+ +  +         +  A+  +  
Sbjct: 1   MLNKIKRYIASEQLLKPKAHCLVALSGGADSVALLLTMRQL-------GYETDAVHCNFH 53

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR + +  +  Y   +C +L I   +  +         +  +  AARE RY    +  + 
Sbjct: 54  LRGDESNRDEEYCQSLCKQLNIPLHIAHFDTLTYAEAHKVSIEMAARELRYRYFFQLKEA 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + A  I   H  +D +ET+ +   R     G GLSGM        +  I RP L   R++
Sbjct: 114 LGADAICVGHHQEDSVETILINLVR-----GTGLSGMLGIRPKKGD--IVRPLLCVSRKE 166

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVK 229
           I  +L Q+ IS+  D +N  D   R ++R         +      A+    +   D+   
Sbjct: 167 IEEYLHQQAISYVTDSTNLVDDVVRNKLRLNILPQLAAINPSVNDAILTTARHLMDVDKI 226

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY----- 284
           V  ++   +   +    +      +     +  + F L          Q S P Y     
Sbjct: 227 VEASLLQALQSAVKPLRKGQEISFKRPFKPEENVPFTLDLQVV----RQFSAPSYLLFYV 282

Query: 285 --------RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
                     +  V                  +    + L +     ++P  ++ PE   
Sbjct: 283 LKPLGFTTSQITEVAELADEKTGQLWESAAYELTHDRHSLLVLPLEHDVPRPLVIPET-- 340

Query: 337 VWDGRYQFQNLSD 349
              GRY +   + 
Sbjct: 341 ---GRYIYDEHTS 350


>gi|258592317|emb|CBE68626.1| Putative ATPase; tRNA(Ile)-lysidine synthase (modular protein)
           [NC10 bacterium 'Dutch sediment']
          Length = 468

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 124/322 (38%), Gaps = 26/322 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R L     +++AVSGG DSM     LH +L  R+          ++H LR   + +  R+
Sbjct: 17  RMLAAGEAVVLAVSGGVDSMA---MLHLLLHLRTRYHGPLHVAHLNHDLRGAESAETARF 73

Query: 73  VSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V   C   +I  ++          +    L AAAR+ RY  +   A    A  I   H  
Sbjct: 74  VQRQCEARQIPVTITRADGRALRDRRAGSLQAAARDLRYRFLERVADEQGAGRIAVGHHR 133

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV M   R    +G+G        +  +   I RP + C RE+I  ++ +  I +
Sbjct: 134 DDQAETVLMNLLRGSGVRGIG-------GIPPVRGRIIRPLIDCSREEIERYVRKERIPY 186

Query: 189 CEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            ED SN    + R R+R  +            +H+L       +     +N+     +  
Sbjct: 187 VEDSSNHVLAYSRNRIRLELLPELAKRYNPRVIHSLANAATILEAEDTLLNDMADRELRA 246

Query: 241 YLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSG 297
            L    R    +S   +  + S L + ++R SA           ++    +  +L  K  
Sbjct: 247 ILVSRSREEFVLSIPPMTTLLSALRWRIIRRSAEELRAGHPGLTFQHTLAIDRLLMTKGA 306

Query: 298 KRGCVSIGRVVIDRRANFLWIT 319
           K    + G +   R  N L ++
Sbjct: 307 KGAIHAPGGLRARRVGNSLVLS 328


>gi|262281632|ref|ZP_06059401.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. 2_1_36FAA]
 gi|262262086|gb|EEY80783.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. 2_1_36FAA]
          Length = 425

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 106/268 (39%), Gaps = 24/268 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            FL   +   +F+        +L+A+SGG DSM LL  L+    +     I+     ++H
Sbjct: 5   QFLKQCKEKAYFIEH----QRVLLAISGGLDSMTLLNLLYKYQKEL---DIELILAHINH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R  A  E + + ++  +L +     S+     +      AR+ RY    +  +  + T
Sbjct: 58  KQRIEADQEEKQLKEIAQKLGVKILTSSFSGVFSEKS----ARDFRYNFFKKVMQEEDCT 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++TAH  DDQ ET++MR  R    +   LSGM D   +     + RP L   + D  + 
Sbjct: 114 ALVTAHHADDQAETIFMRILRGSRLRY--LSGMKDRQPFG-GGELIRPLLEFSKTDFPT- 169

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
                +   ED SN ++ + R RVR          L  +  + +   + +   +A L   
Sbjct: 170 -----VFHFEDASNFENTYFRNRVRNQ----YFPLLETENPRIKQAIIGLGLEIAQLQKA 220

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLL 268
              +     +   Q        +  +LL
Sbjct: 221 LSGLTKDLNLTDLQTFRKQKREVQVFLL 248


>gi|290579537|ref|YP_003483929.1| putative cell-cycle protein [Streptococcus mutans NN2025]
 gi|254996436|dbj|BAH87037.1| putative cell-cycle protein [Streptococcus mutans NN2025]
          Length = 423

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/266 (24%), Positives = 112/266 (42%), Gaps = 24/266 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  ++  +FF        +IL+AVSGG DSM LL  LH         +I+ +   V+H  
Sbjct: 7   LKYVQEKKFFETHY----NILIAVSGGVDSMNLLHFLHIYQKKL---QIRIAVAHVNHKQ 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A +E  Y+ +      I      +K           AR+ RY       K    T +
Sbjct: 60  RPQADEEEIYLKNWARDNHIPFYTAVFKGIFS----EKKARDFRYTFFKNIMKEHGYTAL 115

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAH  +DQ ETV++R  R    + +  +G+ +   +  N  + RPFL+  ++++     
Sbjct: 116 VTAHHANDQAETVFLRLLRGSRLRYL--TGIKEIQEFG-NGQLIRPFLKFHKKELP---- 168

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             NI   +D SN  + + R R+R       L  L  +  K     ++++    +L   + 
Sbjct: 169 --NIFHFDDDSNQGNSYLRNRIRNH----YLPILTQENPKLSQHLIQMSEETNLLFKAFS 222

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLL 268
            +  +  I   Q   +    + ++LL
Sbjct: 223 DLTSQLDIQDCQIFRSQSEAIQYFLL 248


>gi|188996043|ref|YP_001930294.1| tRNA(Ile)-lysidine synthetase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931110|gb|ACD65740.1| tRNA(Ile)-lysidine synthetase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 457

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 113/311 (36%), Gaps = 22/311 (7%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++VR F  +L+     IL+A SGG DS+ L   L       +  KI+     ++H L
Sbjct: 7   KFLKAVRKF--NLIENQDKILIAFSGGPDSLVLTNLLLKFQKTLNIAKIQL--AHLNHTL 62

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTIN 118
           R+ +  +  +     S L +   V      K     +  +  A R  RY   +E  +  N
Sbjct: 63  RKESDQDQEFCEKFASSLGLKIHVKKADVKKVAREQKISVEEAGRLERYKFFNEILQKEN 122

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I T H   D  E++ +   +          G+      + N  I RP     +E+I 
Sbjct: 123 LNKIATGHHLSDLTESIVLWFIQGNKR------GLKGFRPKENN--IIRPLYLITKEEIE 174

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVA 235
            +  +  + +  D SN   ++ R +VR  V  I       L   M     L       + 
Sbjct: 175 EYCQKNGLEYLIDQSNFSRKYLRNQVRLDVIPILKKINPDLENSMLNLSQLSYFDEFYLD 234

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
            L  +Y +      + +    +N     L Y L +   I     + P Y+ +  +M  L 
Sbjct: 235 KLTEEYYSQLDNKNL-LDLSFINKLPNALKYRLLIK-WIYENTDTYPSYKQILNLMEILD 292

Query: 296 SGKRGCVSIGR 306
              +  + I R
Sbjct: 293 KQGQKEIKISR 303


>gi|223936702|ref|ZP_03628612.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514]
 gi|223894553|gb|EEF61004.1| tRNA(Ile)-lysidine synthetase [bacterium Ellin514]
          Length = 457

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 130/350 (37%), Gaps = 24/350 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +  +E V    +       ILV VSGG DSM LL  L  + S   +     +   ++H 
Sbjct: 8   LMERVEQVIEARQLFGRGERILVGVSGGLDSMVLLEVLSELASKHDW---TLAVAHLNHS 64

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKT 116
           LR  ++  + R V     RL     V    V     K    L  AAR  R+  ++  A+ 
Sbjct: 65  LRGRSSDADERLVRRTAERLGCQCVVERAEVRKFGRKAGLSLEMAARRLRHEFLARSARK 124

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +   ++  AH  DDQ+E   +R  R  + +G+           D  L + RP L  R+ +
Sbjct: 125 LGIKVVALAHHADDQVELFLLRLLRGASSEGLAGMDWKVASPVDKGLGLVRPLLEVRKSE 184

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +  F  Q  + + +D +N      R RVR  +  + L+     + K    ++++  A   
Sbjct: 185 LEGFAQQEGVKFRKDATNESQEILRNRVRHELVPL-LNGYQPALGKVIMRQMEILGAEGD 243

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
            I +   V    +        N+   +   ++       G       +  +E++ L    
Sbjct: 244 FIDE---VAGNWLRKKDGLFGNLAVAVQRRVIYRQLLELGVAG---DFELVEKLRLRAS- 296

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNL------PTLILYPEETTVWDG 340
             R       +V+ R    +  TR +  +        + L  E   +WDG
Sbjct: 297 --RPVTVSKDMVVTRDEAGVVKTRQIERMGFNSGQIEINLSRENEIIWDG 344


>gi|300362403|ref|ZP_07058579.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus gasseri JV-V03]
 gi|300353394|gb|EFJ69266.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Lactobacillus gasseri JV-V03]
          Length = 431

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 67/317 (21%), Positives = 130/317 (41%), Gaps = 17/317 (5%)

Query: 7   ESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E   FF ++ +       L+A SGG DS+ L   L + L D S    +     +DHCLR+
Sbjct: 3   EFTNFFTKNNIEIKNKKFLLAASGGPDSVALFHMLVNFLPDPSE---QLIVAHLDHCLRK 59

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123
            +  E   +  + +  ++     SW  +  PQTG+ A ARE RYA ++   K      ++
Sbjct: 60  DSYLESELLQRLATAFKVKLIEKSWPLALHPQTGIEARAREFRYAFLANTGKKYQVDYLL 119

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DD +E + ++  R      M    +        ++ + RP ++  ++ +  +  Q
Sbjct: 120 TAHHGDDLIENILLKFIRSGDVAEMNSLQVVGNF---NSMKLLRPLIKYSKDQLLEYDKQ 176

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
            ++ + ED +N +D   R R+R  V  +    L  +     +   + + + A+L     +
Sbjct: 177 NSLDYIEDETNFEDDTLRNRLRHHVVPL----LKKETNHLVENAYRFSESAALLSDCQSS 232

Query: 244 VHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV-MLFLKSGKRGC 301
                I+ +S    L    + L  L +   A       L   +  +RV    ++  K   
Sbjct: 233 FFESLILPVSFGKALQGRKSDLIDLNKNQLAAF--FDYLIYKKWHQRVHFDEIRWSKNAT 290

Query: 302 VSIGRVVIDRRANFLWI 318
            +     +    ++ ++
Sbjct: 291 FNKENFQLIFYQDYYYL 307


>gi|327490349|gb|EGF22136.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK1058]
          Length = 425

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/303 (22%), Positives = 115/303 (37%), Gaps = 26/303 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQEKKYFQDH----RKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+           AAR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGDFS----ENAARQFRYDFFGKVMQEEHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH   DQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHAADQAETVFMRLLRGARLR--HLSGMKAVQSFACG-ELIRPLLTFHKSDFPY-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IQHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQIAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +     I   Q        +  +LL+       G       +  E V+  L++     
Sbjct: 222 SHLTRDLDIENVQAFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKANYQ 279

Query: 302 VSI 304
            ++
Sbjct: 280 HTL 282


>gi|329906074|ref|ZP_08274357.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547349|gb|EGF32180.1| tRNA(Ile)-lysidine synthetase [Oxalobacteraceae bacterium IMCC9480]
          Length = 467

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/320 (21%), Positives = 122/320 (38%), Gaps = 15/320 (4%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           R    +      + +A SGG DS  LL   H          I+  A  V H L   A D 
Sbjct: 23  RVVFSAPAAGDALAIAYSGGLDSSALLYLAHRHAQK---NGIRLFAFHVHHGLSADADDW 79

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           +++ +  C+RL +  +    + +    +G+ AAAR +RYA +    +     L++TAH  
Sbjct: 80  LQHCAGECARLGVTFAAQRVQLADTGVSGIEAAARSSRYAALGAMCRAHGVPLLLTAHHQ 139

Query: 129 DDQLETVYMRSQRDYAEKGMGLS---GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           DDQ ETV ++  R     G+           +L D  L ++RP L   R  + + + +  
Sbjct: 140 DDQAETVLLQLLRGSGVAGLSGMDTANCAPDLLGDAVLVMARPLLSFSRMQLATLVAKEG 199

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           I+  +D SN D R+ R  +R  V             ++ +           +  L  + L
Sbjct: 200 ITHVDDASNLDTRYARNALRHEVMPALAKFFPGFQHRLARTASHAQSAQRLLIELATQDL 259

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299
            +           +  +       LLR      G  + +P    +  +   +   K   +
Sbjct: 260 ALCAAGDALDISRLRLLSPDRADNLLRYWFGSRG--VRMPSTSWLHEMRTQLFEAKPDAQ 317

Query: 300 GCVSIGRVVIDRRANFLWIT 319
            CV+     I R  + ++IT
Sbjct: 318 LCVTHADCHIRRHRDHVFIT 337


>gi|157150417|ref|YP_001451360.1| tRNA(Ile)-lysidine synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189035973|sp|A8B000|TILS_STRGC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157075211|gb|ABV09894.1| tRNA(Ile)-lysidine synthetase [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 425

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 24/268 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            FL   +   +F+        +L+A+SGG DSM LL  L+    +     I+     ++H
Sbjct: 5   QFLKQCKEKAYFIEH----QRVLLAISGGLDSMTLLNLLYKYQKEL---DIELILAHINH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R  A  E + + ++  +L +     S+     +      AR+ RY    +  +  + T
Sbjct: 58  KQRIEADQEEKQLKEIAQKLGVKILTSSFSGVFSEKS----ARDFRYNFFKKVMQEEDCT 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++TAH  DDQ ET++MR  R    +   LSGM D   +     + RP L   + D  + 
Sbjct: 114 ALVTAHHADDQAETIFMRILRGSRLRY--LSGMKDRQPFG-GGELIRPLLEFSKTDFPT- 169

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
                +   ED SN ++ + R RVR          L  +  + +   + +   +A L   
Sbjct: 170 -----VFHFEDASNFENTYFRNRVRNH----YFPLLETENPRIKQAIINLGTEIAQLQKA 220

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLL 268
              +         Q        +  +LL
Sbjct: 221 LSDLTKDLNQTDLQTFRKQKREVQVFLL 248


>gi|148244290|ref|YP_001218984.1| cell cycle protein MesJ [Candidatus Vesicomyosocius okutanii HA]
 gi|146326117|dbj|BAF61260.1| cell cycle protein MesJ [Candidatus Vesicomyosocius okutanii HA]
          Length = 390

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 124/316 (39%), Gaps = 32/316 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
            +   +I++ +SGG DS+ LL  L++          K   I  +H L +      ++   
Sbjct: 10  FLEDKNIVLGLSGGIDSIVLLHYLNT------HYPNKIRVIHCNHHLSQFCNKWDKFCKT 63

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C  L I +  ++       + +   AR+ RY  +S   K     ++ TAH  +DQ ET+
Sbjct: 64  TCLNLNIVYLSINLSF-DNTSNIEENARKKRYHSLSNLLKEN--EVLCTAHHKNDQAETL 120

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R       GL+ M         +   RPFL   +  +  +     ++W ED SN 
Sbjct: 121 LLQLFRGSGS--AGLAAMPKEKPLGKGIH-YRPFLTINKSQVSDYANNHKLNWIEDDSNK 177

Query: 196 DDRFERVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNNAVAML-IPKYLTVHMRS 248
           +  F R  +R  +         +L     +  + Q   +K+   +A + I  Y  ++  +
Sbjct: 178 NTYFRRNFLRLEILPKLSEVYKNLTETLARSAQHQSETLKLTRELADIDIKTYYIINHTN 237

Query: 249 IIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCV 302
            I ISQ     I  I + +  +L  ++          P  + M ++  +L  K   +  V
Sbjct: 238 RINISQLIKLGIHRIKNIIRHHLNLLNFLT-------PSDKIMHQIIKLLHAKKDTKPLV 290

Query: 303 SIGRVVIDRRANFLWI 318
              +  + R  N L+ 
Sbjct: 291 CWNKYEVRRYKNELYF 306


>gi|171778208|ref|ZP_02919437.1| hypothetical protein STRINF_00276 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283032|gb|EDT48456.1| hypothetical protein STRINF_00276 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 421

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 24/243 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +  I+   +F +       +L+AVSGG DSM LL  L+     R    +  +   V+H 
Sbjct: 5   LVKEIQKKAYFAKH----KKVLIAVSGGVDSMNLLHFLYIY---RKKLGVDIAIAHVNHK 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E  Y+ +     +I   V  +  +        AAR+ RY    E     + T 
Sbjct: 58  QRLESDTEEAYLREWAKEHQIPIYVAYFSGAFS----ETAARDFRYKFFKELMAEHSYTA 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ET++MR  R    +   LSGM     +  +  + RPFL   ++++    
Sbjct: 114 LVTAHHADDQAETIFMRLLRGSRLR--HLSGMQTVNAFG-DGELIRPFLAYSKKELPD-- 168

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED +N    F R R+R          L  +  KF+     + N    L   +
Sbjct: 169 ----IFHFEDDTNRSLDFLRNRIRNH----YFPILEEENPKFKQALRYLGNESQQLFQAF 220

Query: 242 LTV 244
             +
Sbjct: 221 QDL 223


>gi|281490518|ref|YP_003352498.1| tRNA(Ile)-lysidine synthetase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374336|gb|ADA63869.1| tRNA(Ile)-lysidine synthetase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 423

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 20/272 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++   +F +     + IL+A+SGG DSM L   L+ +   +    I+     ++H 
Sbjct: 8   FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDL---KEVLGIELGLAHINHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LRE +K E   + ++ ++L++   V  +     +      AR+ RY    +     N  +
Sbjct: 61  LREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGENYNI 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH   D +ETV MR       +   L G+ D   +     + RP L+  +E++ +  
Sbjct: 117 LLTAHHQGDLVETVLMRQITGRPLR--SLQGIADRQPFA-GGQLIRPLLKFTKEELDA-- 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
                 + ED +N    + R R+R  +            +   DL  ++  A+A++  K 
Sbjct: 172 ----QIYYEDSTNQGLDYFRNRIRNQLIPELTKENPQFSQSISDLSSEIKKALAVINQKI 227

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273
             + +      S+  ++    L  ++L+   A
Sbjct: 228 SELEIVDEKISSKKFISQTKELQHFILQAFFA 259


>gi|319794157|ref|YP_004155797.1| tRNA(ile)-lysidine synthetase [Variovorax paradoxus EPS]
 gi|315596620|gb|ADU37686.1| tRNA(Ile)-lysidine synthetase [Variovorax paradoxus EPS]
          Length = 323

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 118/315 (37%), Gaps = 29/315 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + V  SGG+DS  LL A  S          +  A  V H L+  A D  R+  +VC+RL
Sbjct: 18  PLAVGFSGGADSNALLAACASRWPG------QVVAFHVHHGLQAAADDFERHCGEVCARL 71

Query: 81  RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTIN----ATLIMTAHTFDDQLETV 135
            +   V        P       AR ARY      A+  +       I   H  DDQ+ET+
Sbjct: 72  GVPLVVHRVDARHAPGDSPEDTARRARYEAFGVMARMDSTRPFIQSIALGHHADDQVETL 131

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G+              L I RP L     DIR++L  R++ W EDPSN 
Sbjct: 132 LLALSRGAGLPGLAAMPAHAE---RNGLNIYRPLLTVPAADIRAWLAARDLPWIEDPSNG 188

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D R+ R R+R  +    L AL     +F+    +     A      L +  + + ++   
Sbjct: 189 DARYTRNRIRAVL----LPALEQAFPQFRATFARSIGHAAQAQQLLLELAAQDLKSVGDP 244

Query: 256 IL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----GKRGCVSIGR 306
            L              +LR       G    P    +++++  +++    G R  + +  
Sbjct: 245 PLIKALQAFSRARQANVLRHWLMQSHGCA--PSAAQLDQLLDQVRACTTRGHRIHLKVAG 302

Query: 307 VVIDRRANFLWITRA 321
              +R+ + L    A
Sbjct: 303 GFAERKGDRLHWYNA 317


>gi|255038959|ref|YP_003089580.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053]
 gi|254951715|gb|ACT96415.1| tRNA(Ile)-lysidine synthetase [Dyadobacter fermentans DSM 18053]
          Length = 444

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 125/328 (38%), Gaps = 30/328 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           L+AVSGG DS+ ++   H          +       +  LR E +  +  +V  + +R  
Sbjct: 22  LLAVSGGIDSVVMVHLFHE-------QGLPAGIAHCNFGLRGEESNADEAFVRALAARCN 74

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               V    V   +         AARE RY    E  ++     I TAH  +D LET+ +
Sbjct: 75  FPVFVSDPDVKTFSKSHSISTQMAARELRYEWFEEIRRSSGYGWIATAHHSNDSLETLLL 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G GL GMC       +  + RP +   R ++R +  +  I+W ED SN  D
Sbjct: 135 NLAR-----GTGLPGMCGIAPVRDH--LIRPLILSNRAEVRRYAEENGITWREDRSNASD 187

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            ++R +VR  V  + L  L   ++   +   +   A   L+ +YL      I+  S   +
Sbjct: 188 DYQRNKVRHHVVPV-LTDLNPSLETTFNASAERLRAANTLLDEYLGAWKSRIMRDSGGSM 246

Query: 258 NID------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
           NI        +   Y L       G    L        V L  K GK+       ++IDR
Sbjct: 247 NIPIDEILGKSEPIYRLWYILQDFG---FLYSQVRAIAVALHGKPGKQFHSPTHVLLIDR 303

Query: 312 RANFLWITRAVRNLPTLILYPEETTV-W 338
               L       N   L++   ET V W
Sbjct: 304 ALLILKAHGEQSNEGQLLIEDTETPVEW 331


>gi|309806956|ref|ZP_07700938.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b]
 gi|308166576|gb|EFO68773.1| tRNA(Ile)-lysidine synthetase [Lactobacillus iners LactinV 03V1-b]
          Length = 409

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 9/247 (3%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+S G DSM LL  +  ++ D    + +     VDHCLR  +  E   ++  C + ++  
Sbjct: 2   AISAGPDSMALLDMMRQIVDD---PQSQLIICHVDHCLRNDSYLESEIITKYCQQYKLQL 58

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
               W    P  GL AAAR+ RY   ++  +   A  + TAH  DD  E + ++  R   
Sbjct: 59  EETKWDTPHPANGLEAAARDFRYDFFAKILRKYQADYLFTAHHGDDLAENILIKLLRSGN 118

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
            + M  + +     +  N  + RP L   +E++  +  +R +++  D +N ++   R R+
Sbjct: 119 VQEM--NSLRPIRNWIDNSLLVRPLLSFSKEELLVYAKKRKLAYVVDYTNQENETLRNRL 176

Query: 205 RRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSIIAISQDILNID 260
           R FV      D   L     +F      + +   +L  K      +  I+ ++   L+  
Sbjct: 177 RHFVMPQLKKDAVDLIKNANRFVQTEESLEDWQKLLFEKIRYHKLLNGIVQVNAADLSDF 236

Query: 261 STLLFYL 267
           +     L
Sbjct: 237 NCQQLSL 243


>gi|74316607|ref|YP_314347.1| cell cycle protein MesJ [Thiobacillus denitrificans ATCC 25259]
 gi|74056102|gb|AAZ96542.1| cell cycle protein MesJ [Thiobacillus denitrificans ATCC 25259]
          Length = 445

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 126/335 (37%), Gaps = 17/335 (5%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
              R +   A +++A+SGG DS+ LL  L S+   R   +   +A+ V H L   A D  
Sbjct: 4   ALARHVFSGARLVLALSGGLDSVVLLHVLASL---RGRHRFALAAVHVHHGLSPHASDWA 60

Query: 71  RYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +   +C+   +   V           G  AAAR  R+ + +     ++A  ++TAH  D
Sbjct: 61  DFCERLCAAHALDLQVERVHIAGDDPAGTEAAARRERHRVFA----RLDADFVLTAHHLD 116

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV ++  R    KG+                  RP L   R  IR+   +  ++W 
Sbjct: 117 DQAETVLLQLLRGAGPKGLAAMPQLR-RPAGWRAAQLRPLLDVSRRAIRAHAQRHGLAWV 175

Query: 190 EDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           ED SN D R+ R  +RR +              + +   L+ +    +  L        +
Sbjct: 176 EDESNLDLRYRRNALRRDIMPRLAAHFPGSAPTLARAAALQAEAAGLLDDLAALDAQGAV 235

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVS 303
           R        +  + +     LLR    I G    LP  R ++   L L   +   R  V+
Sbjct: 236 RGDRLDCAALAALSAPRARNLLRHF--IEGRGCPLPSARVLDEARLQLVDARHDARVRVN 293

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW 338
           +    + R     ++          + +  E ++W
Sbjct: 294 LKAAELWRFRGHAYVVSPAPAPAPAVYWHGEQSLW 328


>gi|304385528|ref|ZP_07367872.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus acidilactici DSM
           20284]
 gi|304328032|gb|EFL95254.1| tRNA(Ile)-lysidine synthetase, MesJ [Pediococcus acidilactici DSM
           20284]
          Length = 457

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 10/257 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A ++VAVS G DS  L+ AL   L+  +  + +     V+H LR  +  E  ++   C++
Sbjct: 20  APVVVAVSTGVDSTVLINAL---LAATNLAENRLIIAHVNHQLRSQSVQEEEFLRQWCAK 76

Query: 80  LRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            R+      W     P TG+ AAAR  RY   ++  +  +A  ++TAH   +Q E+  M+
Sbjct: 77  RRLTFVSTKWSRELHPDTGVEAAARRFRYDFFAKVMQRYHANTLLTAHNATEQAESFLMQ 136

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R        L G  +   +     + RPFL+  +  + +   + +++W ED +N  D 
Sbjct: 137 VVRGGWL--SQLRGTPEERSFATG-RLVRPFLKISKPTLVALAQENHLTWFEDETNQQDD 193

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKV---NNAVAMLIPKYLTVHMRSIIAISQD 255
           + R RVR  +           ++     + ++   +  +  +  + L    +        
Sbjct: 194 YLRNRVRNQLLPALQAENPRVVEHIGQYQTEITEQDQLIKEISRQKLAQLRQGSQYQLPK 253

Query: 256 ILNIDSTLLFYLLRVSA 272
                      LL+   
Sbjct: 254 FKAESRLWQKQLLKQLV 270


>gi|32474937|ref|NP_867931.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1]
 gi|61216595|sp|Q7UNE1|TILS_RHOBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|32445477|emb|CAD75478.1| cell cycle protein homolog mesJ [Rhodopirellula baltica SH 1]
          Length = 397

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 53/259 (20%), Positives = 98/259 (37%), Gaps = 20/259 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGK-----------IKFSAISVDHCLR-ETAKDEV 70
           LV  SGG+DS+ L+  L  + ++ S G                    +H LR E +  + 
Sbjct: 40  LVGCSGGADSVALICLLAELWAEESNGLNPANETVTKPVAPLVVAHCNHGLRGEESNADE 99

Query: 71  RYVSDVCSRLRIAHSVVSW-----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            +V  +C +L++   +          +          R+ R       AK      +  A
Sbjct: 100 AFVRQICDQLQLPLVIHHVPPLNNSATSGPVSDERTLRQIRRDFFERAAKQHGCRYVAVA 159

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H+ DDQ ET+     R      +GL+G+ +    D ++ + RP L+ RR+ +R  L +  
Sbjct: 160 HSADDQAETMLHHFIRGTGP--LGLAGIAEASELDTDIVVRRPLLQVRRDTLRDGLREIG 217

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
             W ED SN    + R  +R  V  +        ++        + + +  ++ +     
Sbjct: 218 QPWREDASNRHTIYTRNWIRHDVLPLIESRYPNAVEAIHRA-GTLQHEMNEMVRRLAERW 276

Query: 246 MRSIIAISQDILNIDSTLL 264
           + +    S D   I +  L
Sbjct: 277 LEAFTDFSGDRWTIHTERL 295


>gi|198276045|ref|ZP_03208576.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135]
 gi|198271674|gb|EDY95944.1| hypothetical protein BACPLE_02229 [Bacteroides plebeius DSM 17135]
          Length = 426

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/340 (20%), Positives = 117/340 (34%), Gaps = 28/340 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF+  +           +   +LVA+SGG+DS        ++L           A   + 
Sbjct: 1   MFIKKVSQFIEEKHLFGFSDKVLVALSGGADS-------VALLRVLLRLGYACEAAHCNF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR E +  + R+V  +  RL +   V+ +      +     +  AARE RY   ++  +
Sbjct: 54  HLRGEESVRDERFVRALAERLGVPLHVIHFDTNAYAASHNVSVEMAARELRYDWFTKLRQ 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A ++  AH  DD +ET  +   R     G+         +  +N  + RP L   R 
Sbjct: 114 ECGAKVVAVAHHRDDSVETFLLNLVRGTGINGL-------QGIRPVNGDVVRPLLCVSRA 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I  +L      +  D +N  D F R ++R  V  +    L        D        ++
Sbjct: 167 EILDYLSSLGQDYVTDSTNLQDEFVRNKLRLNVIPM----LETINPSVSDTIADTARRLS 222

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLF 293
            +   Y      +   +  D   ID   L         +    +   G+    +  V   
Sbjct: 223 DVAQVYQEAIQAAKQRVMPDGETIDIPALCREPGAQNLLFE-LLYPLGFNAAQVNDVFRA 281

Query: 294 LK--SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY 331
           L   SG+        ++IDR       +  V   P L L 
Sbjct: 282 LHGESGRMFYSREWVLLIDRNRLIRRPSGEVEPQPELCLE 321


>gi|170760449|ref|YP_001788867.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407438|gb|ACA55849.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 468

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 122/275 (44%), Gaps = 24/275 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77
             I+V VSGG DSM     LH +   ++  +IK      ++H +R   +  + +YV + C
Sbjct: 19  DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75

Query: 78  --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ E
Sbjct: 76  YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +
Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189

Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245
           N  + + R ++R     +++D     +   + +F ++  K NN +  +      +Y T  
Sbjct: 190 NLQNIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
           ++ +I   +  L    ++   +LR +       + 
Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283


>gi|311748470|ref|ZP_07722255.1| tRNA(Ile)-lysidine synthase [Algoriphagus sp. PR1]
 gi|126576986|gb|EAZ81234.1| tRNA(Ile)-lysidine synthase [Algoriphagus sp. PR1]
          Length = 439

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 109/318 (34%), Gaps = 38/318 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
           L      L+A SGG DS+ L   LH            F    V+  LRE  +  +  +V 
Sbjct: 15  LDLDKKYLLACSGGLDSVCLGTLLHQ-------SGFSFEVAHVNFHLREKESDGDELFVK 67

Query: 75  DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++  +      V            +     AAR+ RY    +  K  N   I+ AH  DD
Sbjct: 68  NLAEQWNAPFHVHQADTYSFVEDHKVSTQMAARDIRYEWFEQIRKERNLAGILLAHHEDD 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           QLET+++   R    +G  L GM +         + RP L   R +I  F     ++W E
Sbjct: 128 QLETIFLNLLRGTGIEG--LYGMAEKR-----GKLIRPLLPFSRAEILEFATAMELAWRE 180

Query: 191 DPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           D SN    ++R ++R  +    L         L+    + +D              + + 
Sbjct: 181 DSSNKSTDYKRNKLRIDILPKLLDFAEDSRANLFTSFDRLKDTGRAFTGLFDQWKSQAIK 240

Query: 244 VHMRSIIAISQDILNIDST--LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
                      D L++D    L+++ LR                  + +      G+ G 
Sbjct: 241 DEEGIQTLGYSDFLHLDGATSLIYFWLR---------SYGFNSTQAQEIYQSCLLGESGK 291

Query: 302 -VSIGRVVIDRRANFLWI 318
                  V++   + L +
Sbjct: 292 LFESASFVLNNDRDQLIL 309


>gi|294664722|ref|ZP_06730052.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292605500|gb|EFF48821.1| cell cycle protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 418

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 124/348 (35%), Gaps = 17/348 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  LL  L +    R  G     A+ V H L   A     +    C  L++
Sbjct: 2   LLAYSGGMDSSVLLHLLAAASRYRHAG---LRALHVHHGLHADADAWAAHCQRTCDALQV 58

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +V  + ++  +GL   A        +     I    +  AH  DDQ ET  +R+ R 
Sbjct: 59  PLQIVRVQVAR-DSGLGLEAAARNARHAAFAQALIAGEWLALAHHRDDQAETFLLRALRA 117

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +G+             +  + RP L   R D+ ++     + W +DPSN D   +R 
Sbjct: 118 SGPEGLAAM---RPQRPFASGTLWRPMLAHARADLLAYAHAHGLRWIDDPSNADPHHDRN 174

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQDILNI 259
            +R  +  +                    +A A+L+ + + +      +  A+    L  
Sbjct: 175 FLRSQIVPLLQQRWPQATDALARSAQLSADASALLLQQDMALLPSVITASGALDLQALRA 234

Query: 260 DSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
                   L  +         LP +   ++E+ +    + +  C +  +V + R    L+
Sbjct: 235 QPVERRARLLRAWVSAAHAPPLPAHGVAALEQEIDNHAADRHACFAWQQVEVRRWRQCLF 294

Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
           + RA    P+     +    WDG    Q    + +++      +   P
Sbjct: 295 LHRAAAAWPS-----DWHAQWDGAAPLQLPDGAQLRLLGAPGLRFAQP 337


>gi|327541838|gb|EGF28350.1| tRNA(Ile)-lysidine synthetase [Rhodopirellula baltica WH47]
          Length = 397

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 96/259 (37%), Gaps = 20/259 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSF-----------GKIKFSAISVDHCLR-ETAKDEV 70
           LV  SGG+DS+ L+  L  + ++ S                      +H LR E +  + 
Sbjct: 40  LVGCSGGADSVALIRLLAELWAEESNVLNPANETVTNPVAPLVVAHCNHGLRGEESTADE 99

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTA 125
            +V  +C +L++   +                     R+ R       AK      +  A
Sbjct: 100 AFVRQLCDQLQLPLVIHHVSPPNNSATPGPVSDERTLRQIRRDFFERAAKQHGCRYVAVA 159

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H+ DDQ ET+     R      +GL+G+ +    D ++ + RP L+ RR+ +R  L +  
Sbjct: 160 HSADDQAETMLHHFIRGTGP--LGLAGIAEVSELDTDIVVRRPLLQVRRDTLRDGLREIG 217

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
             W ED SN    + R  +R  V  +        ++        + + +  ++ +     
Sbjct: 218 QPWREDASNRHTIYTRNWIRHDVLPLIESRYPNAVEAIHRA-GALQHEMNAMVRRLAERW 276

Query: 246 MRSIIAISQDILNIDSTLL 264
           + +    S D   I +  L
Sbjct: 277 LEAFTDFSCDRWTIHTERL 295


>gi|325695771|gb|EGD37670.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis SK150]
          Length = 425

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 114/298 (38%), Gaps = 26/298 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++  ++F         +LVAVSGG DSM LL  L     + +   I+ +   V+H 
Sbjct: 6   FLKKMQERKYFQDH----RKVLVAVSGGLDSMTLLQLLIDSQKELA---IELAIAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  +  +L +     S+  S         AR+ RY    +  +  + T 
Sbjct: 59  QRPESDQEEKALVKIAEQLGVKIFTSSFSGSF----SENVARQFRYDFFGKVMQEGHYTA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ ETV+MR  R    +   LSGM     +     + RP L   + D     
Sbjct: 115 LVTAHHADDQAETVFMRLLRGARLR--HLSGMKAVQPFACG-ELIRPLLTFHKSDFPD-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R     + L  L  +  +F+D    +   +       
Sbjct: 170 ----IDHFEDSSNFQNDYLRNRIRN----LYLPDLEKENPQFKDSLRYLGKEIEDWQTAL 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
             +     I   Q        +  +LL+       G       +  E V+  L++   
Sbjct: 222 SHLTRDLDIENIQVFHQQIPQVQRFLLQNYLENFPGLN--LSKQQFEEVLNILRTKAN 277


>gi|293380361|ref|ZP_06626432.1| tRNA(Ile)-lysidine synthetase [Lactobacillus crispatus 214-1]
 gi|290923044|gb|EFD99975.1| tRNA(Ile)-lysidine synthetase [Lactobacillus crispatus 214-1]
          Length = 417

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 10/234 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +LVA S G DSM LL  L ++    SF      A   DH LR  +  EV  + + 
Sbjct: 14  LKDKRLLVAASAGPDSMALLDMLVNLQKQLSF---TVFAAHFDHQLRADSSYEVEVLQNY 70

Query: 77  CSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C++ +I      W K+ +PQTG+ AAAREARY  ++  A +     ++TAH  DD LE +
Sbjct: 71  CAQKKICLFNGKWDKHDQPQTGIEAAAREARYHFLTNVAHSERMNYLLTAHHGDDLLENI 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    + M       ++     + + RP L   ++++  +  +R I +  D +NT
Sbjct: 131 LLKFIRSGNPEEMNSLQDIGSM---HGVVLLRPLLAYSKQELLEYDQEREIDYVIDSTNT 187

Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           +D   R R+R  V  +   +   L     +F +   ++ +     +    TV  
Sbjct: 188 EDETVRNRLRHHVVPLLKEENPNLISNALRFSEKMSQLTDLADEQLNSMRTVEP 241


>gi|258647528|ref|ZP_05734997.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259]
 gi|260852303|gb|EEX72172.1| tRNA(Ile)-lysidine synthase [Prevotella tannerae ATCC 51259]
          Length = 480

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 127/347 (36%), Gaps = 39/347 (11%)

Query: 4   SPIESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             ++++R     L+      +LVAVSGG+DS+ LL  LH +                +  
Sbjct: 13  RVLKTLRRLPEGLLPVKDKRLLVAVSGGADSVALLRVLHQL-------GYACEVAHCNFH 65

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKT 116
           LR E +  +  +VSD+C  L +   +  +            +  AAR+ RY    +    
Sbjct: 66  LRGEASDRDAAFVSDLCRDLGVPFHLRDFATEAFARSQAVSVEMAARDLRYQWFDQLLAE 125

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            N + +  AH  +D +ET ++   R     G+         +      I RP L   R +
Sbjct: 126 RNLSAVAVAHHKEDNVETFFLHLARGSGLHGL-------VGMRYQRGKIIRPLLDVSRRE 178

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVK 229
           I ++L      +  D +N D RF+R R+R  +              L   M++ ++    
Sbjct: 179 IEAWLSAIGQPFVTDETNADVRFKRNRLRNRILPELRQLNPAFDDTLLQTMRRLREADDY 238

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
           +N  +  L   + +      I ++ D     +  LF  L         Q++  G+ + E 
Sbjct: 239 LNQVLDDLWADFTSALP---IGLALDCRRAKAHPLFRTLLH------KQLTPLGFNADEI 289

Query: 290 VMLFLKSGKR--GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
                +S  R   C        D    +L IT  V +     L   E
Sbjct: 290 ADALCRSEVRTGACWVGEGYTADYNRGYLEITPPVPDFIRRSLEVGE 336


>gi|309790448|ref|ZP_07685009.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6]
 gi|308227496|gb|EFO81163.1| tRNA(Ile)-lysidine synthetase [Oscillochloris trichoides DG6]
          Length = 487

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 138/365 (37%), Gaps = 37/365 (10%)

Query: 1   MFLSPIESVRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M    I  VR F++   L  P   ++VAVSGG DS+ LL  L  + +    G        
Sbjct: 1   MDDRLINRVRAFLQAQQLFTPNRRVVVAVSGGPDSLCLLHVLVQLQAQ---GGPLLHVAH 57

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISE 112
           +DH  R   +  E   V+ +C+   +  S+          + + G MAAAR+ARYA +++
Sbjct: 58  LDHGFRGPQSAAEADEVAQICAAWGVPISIGRVDGPALARRLRRGKMAAARQARYAFLTD 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---------LNL 163
             +   A  +  AHT DDQ ETV + + R       GL GM + +               
Sbjct: 118 LVQQQQAHALAVAHTADDQAETVLLHALRGAGP--AGLRGMRERVAAHEWQIEASVVHAA 175

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHAL 216
            + RP L   R +I ++     +   +DPSN    + R RVR  +  +        + AL
Sbjct: 176 DLVRPLLSTTRAEILAYCAAYQLQPADDPSNRALHYARSRVRHQIMPVLARDNPQVVAAL 235

Query: 217 YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
               +   +    +   +  + P  + V    I         +   L  Y LR +A+  G
Sbjct: 236 SRTAQICAEDYAYIQVMLDQIWPDLVQVTPTQIEIDLARWQTLHPALRRYALRRAASSLG 295

Query: 277 GQISLPGYRSMERVMLFLKSGKRGCVSIG---RVVIDRRANFLWITRAVRNLPTLILYPE 333
             +    +  +E     L +     + +    R+ I      +W+   V         P+
Sbjct: 296 --VEELSFAQVEAARACLDAALPTQLDLAQGLRLTITPTHARVWV---VGQPQPPTAAPQ 350

Query: 334 ETTVW 338
               W
Sbjct: 351 LAVPW 355


>gi|153939118|ref|YP_001392881.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str.
           Langeland]
 gi|152935014|gb|ABS40512.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str.
           Langeland]
 gi|295320858|gb|ADG01236.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum F str. 230613]
          Length = 468

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77
             I+V VSGG DSM     LH +   ++  +IK      ++H +R   +  + +YV + C
Sbjct: 19  DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75

Query: 78  --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ E
Sbjct: 76  YMNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +
Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189

Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245
           N    + R R+R     +++D     +   + +F ++  K NN +  +      +Y T  
Sbjct: 190 NLQSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
           ++ +I   +  L    ++   +LR +       + 
Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283


>gi|226950983|ref|YP_002806074.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A2 str. Kyoto]
 gi|226842830|gb|ACO85496.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A2 str. Kyoto]
          Length = 468

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77
             I+V VSGG DSM     LH +   ++  +IK      ++H +R   +  + +YV + C
Sbjct: 19  DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75

Query: 78  --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ E
Sbjct: 76  YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +
Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189

Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245
           N    + R R+R     +++D     +   + +F ++  K NN +  +      +Y T  
Sbjct: 190 NLQSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
           ++ +I   +  L    ++   +LR +       + 
Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283


>gi|148381467|ref|YP_001256008.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC
           3502]
 gi|153932046|ref|YP_001385842.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|153936096|ref|YP_001389249.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. Hall]
 gi|148290951|emb|CAL85087.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928090|gb|ABS33590.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. ATCC
           19397]
 gi|152932010|gb|ABS37509.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum A str. Hall]
 gi|322807852|emb|CBZ05427.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum H04402 065]
          Length = 468

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77
             I+V VSGG DSM     LH +   ++  +IK      ++H +R   +  + +YV + C
Sbjct: 19  DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75

Query: 78  --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ E
Sbjct: 76  YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +
Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189

Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245
           N    + R R+R     +++D     +   + +F ++  K NN +  +      +Y T  
Sbjct: 190 NLQSIYTRNRIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
           ++ +I   +  L    ++   +LR +       + 
Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283


>gi|92118967|ref|YP_578696.1| tRNA(Ile)-lysidine synthetase-like [Nitrobacter hamburgensis X14]
 gi|91801861|gb|ABE64236.1| tRNA(Ile)-lysidine synthetase-like protein [Nitrobacter
           hamburgensis X14]
          Length = 345

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 129/281 (45%), Gaps = 12/281 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+   F       A +++ VSGG DS  L+          + G     A++VDH L
Sbjct: 9   ISATEAKLLFADWKAAHA-LVLGVSGGPDSTALMWLAARWRRAMTRGP-DLIAVTVDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  +  E R V  + + L + H  V W  +KP++GL AAAR+ARY L+++ A+   A  +
Sbjct: 67  RPGSAREARDVKHLATSLGMRHRTVRWSGAKPKSGLPAAARDARYRLLAKTARANGALHV 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            TAHT DDQ ETV MR  R       GLS M    + D    ++RP L   +  + + L 
Sbjct: 127 FTAHTRDDQAETVLMRISRGSGI--TGLSAMARETMRD-GFILARPLLHVSKSRLIATLE 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIP-- 239
           +  I++ EDP+N D  F R R+R  +  +      ++ + +      + N A+ +L    
Sbjct: 184 KAGIAYAEDPTNRDVSFTRPRLRALMPALAEEGCDVRNLARLASRLARANTALELLADGA 243

Query: 240 -KYLTVHMRSI---IAISQDILNIDSTLLFYLLRVSAAICG 276
            +YL +  R        ++    +   +   LL  +    G
Sbjct: 244 ERYLALQDRGAPRPGFQTKAFAALSEEIKVRLLLRAIDRVG 284


>gi|313894865|ref|ZP_07828425.1| tRNA(Ile)-lysidine synthetase [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976546|gb|EFR42001.1| tRNA(Ile)-lysidine synthetase [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 425

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 125/333 (37%), Gaps = 24/333 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  +     F   L    HILVA SGG DS+ LL  L      R  G    +   V+H +
Sbjct: 10  VEHVLRAHDFFSPL---RHILVACSGGVDSLALLDVLDRF---RRAGGAHITCAHVEHGI 63

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R   ++ + R+V D C+   I  +  +          +  L  +AR  RY  +    +  
Sbjct: 64  RGAASRADARFVKDYCAVQGIPFTCAAVDAPAYARAHRMSLETSARILRYEFLYRAREEC 123

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I TAH  DD  ETV MR  R     G+           + +  + RP L   R +I
Sbjct: 124 GCDCIATAHHADDLAETVLMRILRGTGTVGLAAM-------REWDGVLLRPLLTATRAEI 176

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNA 233
            S+   R ++   D +N      R R+R  +  I       A+   + +   L  + +  
Sbjct: 177 VSYARARALAPRSDETNEMCDAMRNRIRNKLLPILRADYNPAVGAALVRLSTLAREEDEF 236

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV--SAAICGGQISLPGYRSMERVM 291
           +A L    L     +    +  +  +   L   +LR+    A  GG+     +    R +
Sbjct: 237 IAELSADALRRAEDAGGLSTAVLCGLHPALQRRVLRLYWQKATAGGKDFSYLHEEQMRSL 296

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
           +F++   +  +  G   + +    +   + ++N
Sbjct: 297 IFVRGVAQIDMPHGYTAVCQYGRLILKKKEIQN 329


>gi|258544242|ref|ZP_05704476.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826]
 gi|258520480|gb|EEV89339.1| tRNA(Ile)-lysidine synthetase [Cardiobacterium hominis ATCC 15826]
          Length = 436

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 121/342 (35%), Gaps = 13/342 (3%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            PA  L+A+SGG DSM LL AL      R+       A  V+H       D   +     
Sbjct: 17  RPAAFLLALSGGRDSMALLQALTL---RRARLAAPLLACYVNHGWSAAGADWGAFCQREA 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   +   +V    +       A AR  RY  ++         +++TAH  DDQ ET  +
Sbjct: 74  TARDVPCEIVKLDWADGGGNAEARARTLRYQALAARLPPRG--VLLTAHHRDDQAETFIL 131

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           ++ R     G  L+ M     +       RP L   R  I +F+    +++ +DPSN D 
Sbjct: 132 QALRGSGLDG--LAAMPARRAFAGGEH-WRPLLDVPRAAIEAFVAAEGVAYLDDPSNADP 188

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R         A              +  A+++       +   +   +S   L
Sbjct: 189 HYARNRLRLMALPALHEAFPQADAALARSATWLGEALSVQQSLLDGILGAATTVLSWQTL 248

Query: 258 --NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
               D+     LLR       GQ   P  R +  +     +     +  G  V+ +    
Sbjct: 249 CERYDAATCKALLRRWLQRA-GQPLPPAARLLSFIDALAGANGHAELRYGATVVVQHRGD 307

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           L++ +A          PE  T W G  +    + + +  G  
Sbjct: 308 LFLYQASTPQAPPPFAPE--TRWPGIGELSLRAGADLLAGRD 347


>gi|257125521|ref|YP_003163635.1| tRNA(Ile)-lysidine synthetase [Leptotrichia buccalis C-1013-b]
 gi|257049460|gb|ACV38644.1| tRNA(Ile)-lysidine synthetase [Leptotrichia buccalis C-1013-b]
          Length = 497

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 15/207 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL+A SGG DS+ L   L           I+ S + ++H LR   ++++++V    + 
Sbjct: 30  DKILIAFSGGPDSVFLYYFLKFFKKKLE---IEVSIVYINHNLRSDVENDLQFVKKFAAE 86

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I + +    V+    + +  +  AARE RY  I    K IN   I T H  DD +ET 
Sbjct: 87  NNIDYYIESINVNKYAKEKKKSVELAARELRYEAIENIRKMINYDKIATGHNLDDNVETF 146

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R  R  +  G+         +  +   I RP L   + +I  FL   N  +  D +N 
Sbjct: 147 IFRLLRGTSLSGL-------RSIPKVRENIIRPILEFEKSEILDFLKNENQDYIIDYTNN 199

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKK 222
           ++ + R  +R  +   D   +    +K
Sbjct: 200 ENNYTRNFIRNKIFP-DFDKINPSFRK 225


>gi|322373967|ref|ZP_08048501.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C150]
 gi|321276933|gb|EFX54004.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C150]
          Length = 421

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 24/310 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ILVAVSGG+DSM LL  L++   D     I+     ++H  R+ ++ E  Y+    
Sbjct: 17  QHKKILVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHINHKQRQESEHEETYLRHWA 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              +I+       ++         AR  RY       K    T ++TAH  DDQ ET++M
Sbjct: 74  KEHQISFH----YSAFSGKFSENDARTFRYEFFRRVMKDYGYTALVTAHHADDQAETIFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   L+G+     +     I RPFL   +  +            ED SNT  
Sbjct: 130 RLLRGSRLR--HLTGISAVRPFGTG-QIIRPFLHLTKAQLPET------FHFEDKSNTSL 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R       L  L  +  KF++    ++  +  L+ + L    + I      + 
Sbjct: 181 AYLRNRIRLS----YLPTLSQENPKFKEHLCLLSEEI-GLMEQALEELTKDITITDLSVF 235

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRANF 315
              S     LL +   +              +++ +L+    G V +  G  ++  + +F
Sbjct: 236 QQQSD-AVQLLLLQNYLDSFPDLQLSKGQFNQLLSYLRKKASGKVPLKNGYELVKTQTDF 294

Query: 316 LWITRAVRNL 325
           L       +L
Sbjct: 295 LIRQEESLSL 304


>gi|61216557|sp|Q72C25|TILS_DESVH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 347

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 81/325 (24%), Positives = 124/325 (38%), Gaps = 36/325 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H +VA+SGG+DS  LL+ LH +   R    +  SA+ VDH LR  +  E R     C  L
Sbjct: 21  HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 77

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I  +V +    +     + G   A R+ARY L++    +  A  I T H   D  E V 
Sbjct: 78  GIPLAVHTLTVDELAAVWRVGTEEAGRKARYDLLAAALPSPAADWICTGHHLGDLAEDVL 137

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R      +G   +CD         I RP L   ++ + +FL    +SW EDPSN  
Sbjct: 138 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTEKDRLEAFLATLGVSWTEDPSNAS 192

Query: 197 DRFERVRVRRFVRDI-------------DLHALYLKMKKFQDLRVKVNNAVA-------- 235
           D + R R+R  V  +             DL  L      F + R     + A        
Sbjct: 193 DTYLRNRMRHGVIPLLTAENPGFLDQVRDLWQLAHIDADFWETRTAATLSAAPASPSHVE 252

Query: 236 -MLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVML 292
                 +   H    I + +  L  +       L +      G GQ       +++   +
Sbjct: 253 GEASAPHDAAHGAESIRLPKTTLTGLHQAERLRLFKEVLRRMGEGQARAETLLALDAAWV 312

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLW 317
             + G R   +  +    RR + ++
Sbjct: 313 AGRGGTRFMFAGCKTATVRRGDIIF 337


>gi|19071761|gb|AAL80000.1| RASPBERRY3 [Arabidopsis thaliana]
          Length = 662

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/309 (22%), Positives = 124/309 (40%), Gaps = 28/309 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK-FSAISVDHCLRETAKD 68
           L     I + VSGG DSM L +      +       ++ G I    AI VDH LR+ +KD
Sbjct: 81  LKPHNRIALGVSGGPDSMALCVLTAKWKTQGLSCVNKTDGFIDGLVAIVVDHGLRQESKD 140

Query: 69  EVRYVSDVCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTA 125
           E   V    S++ I   + S  W + +P+ G L  AARE RY +IS         +++ A
Sbjct: 141 EAELVCSRVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIA 200

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRR 174
           H  DDQ E   +R  R     G+  +     I           + + ++ +  P L   +
Sbjct: 201 HHADDQAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVGPLLDFWK 260

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKV 230
           ED+          W EDP+N    F R R+R  + ++        L   + + +  R  V
Sbjct: 261 EDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLQSGSFKSELQAVISECRRTRSFV 320

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSM 287
           +     LI + +T   +    +  + LN        L +  +A+      +       + 
Sbjct: 321 DKVCTDLIHQTVTATDKGYAILDLERLNPSGVKDICLSKYLSAVLQFISQRQRPIRGNTS 380

Query: 288 ERVMLFLKS 296
           + ++ ++++
Sbjct: 381 KLLLNYIRA 389


>gi|325955276|ref|YP_004238936.1| tRNA(Ile)-lysidine synthase [Weeksella virosa DSM 16922]
 gi|323437894|gb|ADX68358.1| tRNA(Ile)-lysidine synthase [Weeksella virosa DSM 16922]
          Length = 431

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 54/242 (22%), Positives = 102/242 (42%), Gaps = 20/242 (8%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYV 73
           + +  A  L+ +SGG DSM L      +          FS    +  LR   +  + + V
Sbjct: 14  NQLGKAKFLLTISGGVDSMVLFHIFRQL-------SYTFSVAHCNFQLRGNDSDLDEKLV 66

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            D C++ +I   V  +   + Q+     +  A R  RY   ++   T     ++ AH  +
Sbjct: 67  VDTCTKNKIPFFVEKFDVKEYQSTGNYSIEMACRNLRYEWFNKLLITHKFDYLVMAHHLN 126

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQLET+ +   R    KG+         + +++  I RP L   +++I  + +Q  I W 
Sbjct: 127 DQLETLLINLSRGSGSKGL-------MAMEEISNKIFRPLLTFSKKEIVDYAMQEKIIWR 179

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           ED +N ++ F R ++R  +  + L  ++ +  K  +  + +      LI  YL    + +
Sbjct: 180 EDLTNQENDFIRNQIRNQITPL-LEEIHPQFLKNVNKSLAILAEENQLIENYLQTKKKEL 238

Query: 250 IA 251
             
Sbjct: 239 FR 240


>gi|71734564|ref|YP_275961.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555117|gb|AAZ34328.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323103|gb|EFW79192.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329625|gb|EFW85614.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 445

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/309 (21%), Positives = 103/309 (33%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +  SGG DS  LL  L  +    S       AI V H L+  A     +   VC  L +A
Sbjct: 30  IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V   N  P   +  AAR+ARY   ++        +++T    DDQ ET+  R  R  
Sbjct: 88  FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M    +      + RP L   R ++  +  Q  ++W EDPSN D RF R  
Sbjct: 145 GVRG--LAAMPGQRILGRG-HLVRPLLAVSRVELEGYAHQHGLNWVEDPSNDDSRFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260
           +R  V  +                  +  A  +L    +     +        L +    
Sbjct: 202 LRSDVLPLLTSRWPQASTSLARTACHLGEAQQLLDELAVQDLAGAQATTPFAWLGLPVLS 261

Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                   +      LR   A          +   E +        R    +    + R 
Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320

Query: 313 ANFLWITRA 321
              +W   A
Sbjct: 321 QGCIWWVPA 329


>gi|323694216|ref|ZP_08108392.1| hypothetical protein HMPREF9475_03256 [Clostridium symbiosum
           WAL-14673]
 gi|323501689|gb|EGB17575.1| hypothetical protein HMPREF9475_03256 [Clostridium symbiosum
           WAL-14673]
          Length = 475

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 128/346 (36%), Gaps = 41/346 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           ++  +SGG+DS+ LL  L  +   R    I+  A+ V H LR   A  +  +  ++C  L
Sbjct: 21  VIAGLSGGADSVCLLRILRCL---RQELGIELRAVHVHHGLRGSEADRDAAFSEELCKEL 77

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTI-----NATLIMTAHTFDDQ 131
            I    V    ++        +  A R ARY ++   A        N   I TAH  +D 
Sbjct: 78  DIPFKTVRINAAEEAREAGISVEEAGRRARYRILEAEALLWEKDGRNHVHIATAHHGNDS 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+     R    KG+       + +  +   I RP L  +R +I  +L      + ED
Sbjct: 138 AETILHNLFRGSGLKGL-------SGIPPVRGRIIRPILWAQRREILDWLRAHGYPYVED 190

Query: 192 PSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            +N+   + R  +R  +  +    +       + +  +   + +  +     +++  H  
Sbjct: 191 STNSGTDYTRNLIRNELLPVITSRINGQAVQNILRAGEHICEADRYLEKTAGEWVRQHAV 250

Query: 248 SI--------------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           +               + ++ ++L  D  +  Y +R+     G  +     R ++ V+  
Sbjct: 251 AAAAGNAGTENGKETAVFMAAELLKEDRIIRRYAVRIILRELGCPLKDITARHIDNVLEL 310

Query: 294 LKSGKRGCVSI-GRVVIDRRANFLWITR--AVRNLPTLILYPEETT 336
           L  G    V++   +        L  +R      +P  I  PE + 
Sbjct: 311 LGKGTGKEVNLPYGMTAGIEYGRLIFSRGKEAYAMPDSIAGPERSG 356


>gi|293399915|ref|ZP_06644061.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306315|gb|EFE47558.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 406

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/250 (22%), Positives = 99/250 (39%), Gaps = 16/250 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL    S         + F    +++  RE+A  +   V + C R  I
Sbjct: 14  VIGVSGGPDSMALLDMCRSY-------GLSFLVAHMNYQKRESAFRDEELVVNYCQRYEI 66

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V   +    +    A AR  RY    E  +  +   I+ AH  DD LET  M+ +R 
Sbjct: 67  PCYVKR-QKKPCKGNFQAFARAERYHFYHELLEKYHGDAILLAHHLDDHLETYLMQMERG 125

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 G+    +T+LYD    + RP L   ++++ ++ ++  + +  D SN  D + R 
Sbjct: 126 SKGVYYGI--QEETVLYD--CKVLRPLLSYTKQELLAYCIEHQVPYGFDESNFTDDYTRN 181

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
           R+R        H    + ++      + NN    ++ K            +  +  +D  
Sbjct: 182 RIRH---SYIDHMSRKEKEELAAEIAEKNNKAQQVLEKTKAFLAIWQYD-AAALCELDEN 237

Query: 263 LLFYLLRVSA 272
               +LR   
Sbjct: 238 FRKQVLRTWI 247


>gi|220927542|ref|YP_002504451.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulolyticum H10]
 gi|219997870|gb|ACL74471.1| tRNA(Ile)-lysidine synthetase [Clostridium cellulolyticum H10]
          Length = 481

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 141/341 (41%), Gaps = 32/341 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V +SGG DS+ LL  L+S+ ++     IK   + V+H LR + A  +  +V   CS L
Sbjct: 29  IVVGISGGYDSVCLLHILYSISNELG---IKIYPVHVNHMLRGDEALRDENFVKSFCSSL 85

Query: 81  R----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
                I H  ++ K    +  L  A R ARY + S  A    A+ I  AH+ +DQ ET+ 
Sbjct: 86  GLEVYIKHIDIAKKAKTEKISLEEAGRNARYEVFSLVAGERGASKIAVAHSRNDQAETIL 145

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G GL G+        N  I RP L   R  I  ++    +    D SN  
Sbjct: 146 MRICR-----GTGLEGLRGMEYKRDN--IIRPLLDADRSQIEEYVNGIGVEAVTDSSNLH 198

Query: 197 DRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAV----AMLIPKYLTVHMRS 248
             + R R+R  V      A    +   + +   + V  ++ +     +   K +    + 
Sbjct: 199 TDYFRNRIRIDVIPAINIASGSDITENLLRLSKIVVAEDDYLRYNSELYYQKSVLSERKM 258

Query: 249 IIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGY---RSMERVMLFLKSGKRGCVSI 304
              +  ++L+ I  ++   +LR++     G ++  GY     +  ++   ++G +  +  
Sbjct: 259 YTELDLNVLDEIHQSVRLRVLRIAIEKTCGTLNGWGYIHLDKLNNLIENGRTGAQIDLPH 318

Query: 305 GRVVIDRRANFLWIT--RAVR-NLPTLILYPEETTVWDGRY 342
           G   +    + +     +  +      ++ P ET +   R+
Sbjct: 319 GVAAVKSYGSLILKEQGKEHQEQFEKKLIIPGETEI--QRF 357


>gi|291295391|ref|YP_003506789.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
 gi|290470350|gb|ADD27769.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279]
          Length = 521

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/315 (23%), Positives = 121/315 (38%), Gaps = 30/315 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +  +V    ++ AVSGG DS+ LL+ L S          K     +DH LR  +  +  +
Sbjct: 17  LTRMVPEGSLVAAVSGGGDSVALLLLLTS-------TPRKVVVAHLDHSLRPESGQDALW 69

Query: 73  VSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V  +  RL           +K        L A ARE RY  +++ AK   A  I+TAHT 
Sbjct: 70  VKALAERLGYPFESEKLDVAKIAAERGGNLEATARELRYGFLAKVAKKHQAQAILTAHTE 129

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV ++  +    +G+G+              + RP L   R  +R++L  +   W
Sbjct: 130 DDQAETVLLQLLQGTG-RGLGM--------RPKRGKVVRPLLELSRSTLRAYLRCKQQDW 180

Query: 189 CEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            ED SN D   +R  +R  +              + +F  +    + A+  L  + L   
Sbjct: 181 LEDISNADTSLDRNFLRHEIFPRLKARFPQTQTALARFAAISQLDDEALDPLAEQLLLRD 240

Query: 246 MRSIIAIS--QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
            R          +L   + L    LR        +  +     +ER +     G+   + 
Sbjct: 241 RRWPCPAYRVAPLLQAPTGLRRRALRQILEHLRLRPEMGWVVQLERAL----HGEAFTLP 296

Query: 304 IGRVVIDRRANFLWI 318
            G   + RR   L++
Sbjct: 297 EG-WQVRRRDGTLFL 310


>gi|258405590|ref|YP_003198332.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692]
 gi|257797817|gb|ACV68754.1| tRNA(Ile)-lysidine synthetase [Desulfohalobium retbaense DSM 5692]
          Length = 338

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 119/306 (38%), Gaps = 21/306 (6%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           VR  +   +   H+++AVSGG DS+ LL    ++   R     +     +DH LR  +  
Sbjct: 22  VREELTISLAGTHVMLAVSGGVDSVALLAWAAAM---RDKWGARLFCAHLDHGLRPESSQ 78

Query: 69  EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           E + V  +C +L I              + Q G+  A R  RY  +   A       ++T
Sbjct: 79  ERQRVHALCDQLAIPCFSGRSETRRYAQRCQLGIEEAGRLLRYRYLEGIAHRRGCDYLLT 138

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  +D  E   MR  R     G G   +     +D    + RPFL   +  + + +   
Sbjct: 139 AHHANDLAEDSLMRFIR-----GTGWPALAGMAAWDPGRRLLRPFLLTPKHRLHALVQAA 193

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAML 237
            + W ED SN D  ++R R+R  +  +        L  +    ++ Q      +  +   
Sbjct: 194 GLCWEEDSSNRDPAYQRNRIRHQILPLLIKENPNFLETIAQTWRQAQADTAAFDTMLT-A 252

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKS 296
             +   V  + ++A  Q++ ++ + L     +      G GQ       +++ +    KS
Sbjct: 253 ARQAERVVKQGLLAPRQELESLPAALRLRWYKEILDRMGPGQALSANLGALDALYTEKKS 312

Query: 297 GKRGCV 302
           GKR   
Sbjct: 313 GKRVQF 318


>gi|326405617|gb|ADZ62688.1| tRNA Ile-lysidine synthase [Lactococcus lactis subsp. lactis CV56]
          Length = 423

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 20/272 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  ++   +F +     + IL+A+SGG DSM L   L+ +   +    I+     ++H 
Sbjct: 8   FLKIVKDEHYFDKD----SKILLALSGGKDSMTLFNWLYDL---KEVLGIELGLAHINHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LRE +K E   + ++ ++L++   V  +     +      AR+ RY    +     N  +
Sbjct: 61  LREESKFEEIALREMATKLKVPIYVDKFTGEFTEKN----ARDFRYQFFEKLMIGENYNI 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH   D +ETV MR       +   L G+ D   +     + RP L+  +E++ +  
Sbjct: 117 LLTAHHQGDLVETVLMRQITGRPLR--SLQGIADRQPFASG-QLIRPLLKFTKEELDA-- 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
                 + ED +N    + R R+R  +            +   DL  ++  A+A++  K 
Sbjct: 172 ----QIYYEDSTNQGLDYFRNRIRNQLIPELTKENPQFSQSISDLSSEIKKALAVINQKI 227

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273
             + +      S+  ++    L  ++L+   A
Sbjct: 228 SELEIVDEKISSKKFISQTKELQHFILQAFFA 259


>gi|257452690|ref|ZP_05617989.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_5R]
 gi|317059230|ref|ZP_07923715.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_5R]
 gi|313684906|gb|EFS21741.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_5R]
          Length = 444

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 116/316 (36%), Gaps = 28/316 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           + +     ILVA SGG DS+ L+  L  +    SF  +    + + H +R E A  + ++
Sbjct: 15  QYIQEGDRILVAFSGGPDSVFLVEMLLQLQEQLSFQML---LLHLHHMIRQEDADRDYQF 71

Query: 73  VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             +   +  +        V     + +  L  A R  RY    E  K  +   I TAH  
Sbjct: 72  CLEYARKKNLEIIAKKLDVPSYAKENRQSLEEAGRNLRYKFFQEIRKEKSYHKIATAHHL 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD LET + R  R  + +G+         +        RP     +++I  +L +  I +
Sbjct: 132 DDHLETFFFRLLRGSSMEGLA-------GISRKQGDRIRPLRDFEKKEILFYLEEHQIPY 184

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           C D +N +  + R R+R  +    L        K+++   KV + +  L        +  
Sbjct: 185 CHDKTNEEVEYSRNRIRLEL----LPQFDSYNPKWKE---KVASFMEELEENKKGKSIDW 237

Query: 249 IIAISQDILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                +D LN+                  I   QIS+   + + ++   LK G      +
Sbjct: 238 RDYSEEDFLNVTKLQKEREYLQQKIIYEYILSKQISV-NRKQIHQICTLLKKGGSLSYDL 296

Query: 305 GRVV-IDRRANFLWIT 319
                  +  + +WI 
Sbjct: 297 KNFWKFKKEYDRIWIE 312


>gi|168180996|ref|ZP_02615660.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum NCTC 2916]
 gi|182668056|gb|EDT80035.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum NCTC 2916]
          Length = 468

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77
             I+V VSGG DSM     LH +   ++  +IK      ++H +R   +  + +YV + C
Sbjct: 19  DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75

Query: 78  --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ E
Sbjct: 76  YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +
Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYKLNPRIDKT 189

Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245
           N    + R ++R     +++D     +   + +F ++  K NN +  +      +Y T  
Sbjct: 190 NLQSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
           ++ +I   +  L    ++   +LR +       + 
Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283


>gi|312144293|ref|YP_003995739.1| tRNA(Ile)-lysidine synthetase [Halanaerobium sp. 'sapolanicus']
 gi|311904944|gb|ADQ15385.1| tRNA(Ile)-lysidine synthetase [Halanaerobium sp. 'sapolanicus']
          Length = 472

 Score =  193 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 64/321 (19%), Positives = 124/321 (38%), Gaps = 22/321 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     IL+AVSGG DS+ +L         + +  +  + I +DH  R+ +  E+ +V +
Sbjct: 17  LSKGDKILLAVSGGPDSLTMLQLFFEF---KDYFAVDIALIHLDHQFRKESGQELDFVEE 73

Query: 76  VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               L I          +          AAAR  R+    E     +  L+  AH  DDQ
Sbjct: 74  KAKDLNINFYTKKVNLPEIIKNENISAEAAARRERFNFFKEIYLKNDFDLLALAHHKDDQ 133

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +   R    +G  LSG+ +  +    + +  P L   +++I  +  ++ ++   D
Sbjct: 134 AETVLLNLFRGSGLRG--LSGI-EKKININGVQVIHPLLDFSKKEIIKYCQEKKLNPRYD 190

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY-LTVHMRSII 250
            SN ++ + R  +R  +  I    +   +K+      K+       + K     +   +I
Sbjct: 191 SSNKENIYSRNIIRNKIIPIIEAEINPAVKEVIARNAKLIAEEENFLNKISFQKYNNCLI 250

Query: 251 AISQDIL--------NIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKR 299
           +   D L        N D  +   +LR++          + L     +E+++  L +G+ 
Sbjct: 251 SSENDKLILELKKFNNYDKVIRRRILRIAYQKLKDDLEDLYLEHILEIEKLLNNLTTGRG 310

Query: 300 GCVSIGRVVIDRRANFLWITR 320
             +     V     N ++  +
Sbjct: 311 IDLPASIRVEISYENLIFFKK 331


>gi|257466551|ref|ZP_05630862.1| cell cycle protein MesJ [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917706|ref|ZP_07913946.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691581|gb|EFS28416.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 444

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 116/316 (36%), Gaps = 28/316 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           + +     ILVA SGG DS+ L+  L  +    SF  +    + + H +R E A  + ++
Sbjct: 15  QYIQEGDRILVAFSGGPDSVFLVEMLLQLQEQLSFQML---LLHLHHMIRQEDADRDYQF 71

Query: 73  VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             +   +  +        V     + +  L  A R  RY    E  K  +   I TAH  
Sbjct: 72  CLEYARKKNLEIIAKKLDVPSYAKENRQSLEEAGRNLRYKFFQEIRKEKSYHKIATAHHL 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD LET + R  R  + +G+         +        RP     +++I  +L +  I +
Sbjct: 132 DDHLETFFFRLLRGSSMEGLA-------GISRKQGDRIRPLRDFEKKEILFYLEEHQIPY 184

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           C D +N +  + R R+R  +    L        K+++   KV + +  L        +  
Sbjct: 185 CHDKTNEEVEYSRNRIRLEL----LPQFDSYNPKWKE---KVASFMEELEENKKGKSIDW 237

Query: 249 IIAISQDILNIDSTLLFYLLRVSAA----ICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                +D LN+                  I   QIS+   + + ++   LK G      +
Sbjct: 238 RDYSEEDFLNVTKLQKEREYLQQKIIYEYILSKQISV-NRKQIHQICTLLKKGGSLSYDL 296

Query: 305 GRVV-IDRRANFLWIT 319
                  +  + +WI 
Sbjct: 297 KNFWKFKKEYDRIWIE 312


>gi|302346698|ref|YP_003814996.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC
           25845]
 gi|302150433|gb|ADK96694.1| tRNA(Ile)-lysidine synthetase [Prevotella melaninogenica ATCC
           25845]
          Length = 456

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 109/280 (38%), Gaps = 29/280 (10%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  ++ F+     L   A  LVA+SGG+DS+ LL+ +  +         +  A+  +  L
Sbjct: 2   LNKIKRFIVSEHLLRVDALYLVALSGGADSVALLLCIKEL-------GYRVEAVHCNFHL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R E +  + ++  D+C R  I    V +         +  +  AARE RY    +  + +
Sbjct: 55  RGEESLRDEQFCEDLCQRENIPLHKVHFDTQAYADLHKVSIEMAARELRYRYFFQLKEAL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  +D +ET+ +   R     G+         +   N  + RP L   R++I
Sbjct: 115 GADGVCVGHHKEDSVETILINLVRGTGLSGL-------MGIRPRNHDVIRPLLCVTRQEI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
             +L Q  +S+  D +N  D   R ++R         +      A+        ++   V
Sbjct: 168 EDYLHQHAVSFVTDSTNLIDDVVRNKIRLNVLPQLSEINPSVTDAILTTSNHLSEVDAIV 227

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
             ++   + K ++    +    S  + N    L   ++R 
Sbjct: 228 QESLKTALGKAVSFINSATQVSSNSLSNEPFQLDLSVVRA 267


>gi|327402415|ref|YP_004343253.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823]
 gi|327317923|gb|AEA42415.1| tRNA(Ile)-lysidine synthase [Fluviicola taffensis DSM 16823]
          Length = 415

 Score =  193 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 21/237 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSR 79
           +I VA S G DS  LL AL  +             + +++ LRE  ++ +  +V D+  +
Sbjct: 17  NICVACSAGLDSTVLLEALIQLGHSPK-------ILHINYQLREEDSEKDEEFVRDLAKK 69

Query: 80  LRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +   V+             +  AAR  R+A   +     +A  I+ AH  DDQ+ET +
Sbjct: 70  YELEIEVIHCPKEITKGKGINIQEAARNFRHAHFQQFIHENSANRILLAHHQDDQIETFF 129

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R     G+G         +     I RPFL   +E++R F L+  + W ED SN +
Sbjct: 130 LQLLRGSGIFGLGGM-------HAERKGIIRPFLSLTKEELRDFALENKLQWREDWSNQE 182

Query: 197 DRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           ++++R + R  +          L   ++  Q++  +   ++   + + L    +S +
Sbjct: 183 NKYKRNQFRNQIIPQLVESNPNLIESIRTIQEVFREEQQSIYANLQRRLQGWEKSFV 239


>gi|289626017|ref|ZP_06458971.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289651466|ref|ZP_06482809.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330868559|gb|EGH03268.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 445

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 105/309 (33%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +  SGG DS  LL  L  +    S       AI V H L+  A     +   VC  L +A
Sbjct: 30  IGFSGGLDSTVLLHLLAKLAKCESLPA--LHAIHVHHGLQAAANAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V   N  P   +  AAR+ARY   ++        +++T    DDQ ET+  R  R  
Sbjct: 88  FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R ++  +  Q  ++W EDPSN D RF R  
Sbjct: 145 GVRG--LAAMPDQRILGRG-HLVRPLLAVSRVELEGYAYQHGLNWVEDPSNDDSRFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260
           +R  V  +                  +  A  +L    +     + +      L +    
Sbjct: 202 LRSDVLPLLTSRWPQASISLARTACHLGEAQQLLDELAVQDLAGAQVTTPFAWLGLPVLS 261

Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                   +      LR   A          +   E +        R    +    + R 
Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320

Query: 313 ANFLWITRA 321
              +W   A
Sbjct: 321 QGCIWWVPA 329


>gi|27262508|gb|AAN87535.1| cell cycle protein MesJ [Heliobacillus mobilis]
          Length = 308

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 16/232 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79
            I++A+SGG+DS+ LL+    V        I+ +A   +H +R   + ++  +V+++ +R
Sbjct: 23  RIVIALSGGADSVCLLLLFKKVSPQ---FGIELAAAHYNHGMRGKESDEDAAFVAELTNR 79

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L++   +    + W   +P T +  AAR  RY  +S  A+   A  I  AH  DD  ETV
Sbjct: 80  LQVPLFLETAPLKWWQQEPGTKME-AARRLRYDFLSRSAEQAGARWIALAHHADDMAETV 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R    KG+       + +        RP L  RR+++  FL      W  D SN 
Sbjct: 139 LFHMLRGSGIKGL-------SGIPAKRGPFVRPLLPFRRKELEEFLKAEGQHWRHDSSND 191

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            D + R R+R  +    L      ++        +      L  +   V+ +
Sbjct: 192 SDVYTRNRIRHQIMPALLSFNPKLVETLCRNADLLRADAEFLDRECELVYGQ 243


>gi|329925517|ref|ZP_08280391.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. HGF5]
 gi|328939800|gb|EGG36140.1| tRNA(Ile)-lysidine synthetase [Paenibacillus sp. HGF5]
          Length = 476

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 109/280 (38%), Gaps = 16/280 (5%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  IE              I+VAVSGG DS+ LL  LH +   R+   ++     V H 
Sbjct: 9   FVQHIERTAAEFDLWSEGDGIVVAVSGGPDSVALLHVLHEISMHRT--PLRLICAHVHHG 66

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            R  +  E   V ++   LR+        +     +   G   AARE RY  + + A+  
Sbjct: 67  FRRESDQEAEMVRELAESLRLPLETAFIDIPAYMEESGKGGQEAAREKRYEFLLQTARKH 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           NA  +  AH  DDQ ETV+MR  R     G+G      T   +  + + RPFLR  + DI
Sbjct: 127 NARSVALAHHADDQAETVFMRLLRGSGLSGLGGIKFKRT---EKKVELIRPFLRMYKADI 183

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAV 234
                     +  D SN   ++ R  +R  V              + +  ++  + ++ V
Sbjct: 184 VELCRVCGFQYAVDHSNLQTKYRRNAIRLEVFPFLERYNGQFSSSLNQLAEIVQQEDDFV 243

Query: 235 AMLIPKYLTVHMRS----IIAISQDILNIDSTLLFYLLRV 270
            +   K     ++     +   +   L +   L   L+++
Sbjct: 244 ELEAAKQFRSLVQENDGRLAFDAPSFLGLHVALQRRLIKL 283


>gi|323487345|ref|ZP_08092645.1| hypothetical protein HMPREF9474_04396 [Clostridium symbiosum
           WAL-14163]
 gi|323399390|gb|EGA91788.1| hypothetical protein HMPREF9474_04396 [Clostridium symbiosum
           WAL-14163]
          Length = 475

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 128/346 (36%), Gaps = 41/346 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           ++  +SGG+DS+ LL  L  +   R    I+  A+ V H LR   A  +  +  ++C  L
Sbjct: 21  VIAGLSGGADSVCLLRILRCL---RQELGIELRAVHVHHGLRGSEADRDAAFSEELCKEL 77

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTI-----NATLIMTAHTFDDQ 131
            I    V    ++        +  A R ARY ++   A        N   I TAH  +D 
Sbjct: 78  DIPFKTVRINAAEEAREAGISVEEAGRRARYRILEAEALLWEKDGRNHVHIATAHHGNDS 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET+     R    KG+       + +  +   I RP L  +R +I  +L      + ED
Sbjct: 138 AETILHNLFRGSGLKGL-------SGIPPVRGRIIRPILWAQRREILDWLRAHGYPYVED 190

Query: 192 PSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            +N+   + R  +R  +  +    +       + +  +   + +  +     +++  H  
Sbjct: 191 STNSGTDYTRNLIRNELLPVITSRINGQAVQNILRAGEHICEADRYLEKTAGEWVRQHAV 250

Query: 248 SI--------------IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           +               + ++ ++L  D  +  Y +R+     G  +     R ++ V+  
Sbjct: 251 AAAAGNAGTENGKETAVFMAAELLKEDRIIRRYAVRIILRELGCPLKDITARHIDSVLEL 310

Query: 294 LKSGKRGCVSI-GRVVIDRRANFLWITR--AVRNLPTLILYPEETT 336
           L  G    V++   +        L  +R      +P  I  PE + 
Sbjct: 311 LGKGTGKEVNLPYGMTAGIEYGRLIFSRGKEAYAMPDSIAGPERSG 356


>gi|212550361|ref|YP_002308678.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548599|dbj|BAG83267.1| tRNA(Ile)-lysidine synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 447

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 119/322 (36%), Gaps = 36/322 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78
           A I+V VSGG DS  LL  LH +         K  A   +  LR + +  + ++ + + S
Sbjct: 24  AKIVVGVSGGVDSSVLLYILHHL-------GYKCQAAHCNFHLRGDESCRDEKHAALLAS 76

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            + +      +       + +  +  AAR  RY       +  NA +I  AH   D +ET
Sbjct: 77  SMNLVFFKKDFNTQYLAQRNKISIEMAARVLRYKWFEYLRQEQNAEVIAVAHHKGDNIET 136

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +   R    +G+         +   +  I RP L   R++I  F     I + +D SN
Sbjct: 137 LLLNLVRGTGIRGL-------KGIRPKHGKIIRPLLDITRQEIVQFAKDNRIVYVDDSSN 189

Query: 195 TDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            +++  R ++R       + +       L   ++   ++    ++ +     K     + 
Sbjct: 190 FEEKHIRNKIRFKLLPLLKTLNPSVEQVLLHTIENLAEVIKIYDSHIEEARNKVFNPDIG 249

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV-SIGR 306
            I  I         ++LF +L+             G   +  +   +KS       S+  
Sbjct: 250 MINIIELQKFPSPESILFEILK---------TYGFGRDVIYNITRAMKSLSSKEFYSLQY 300

Query: 307 VVIDRRANFLWITRAVRNLPTL 328
           ++I  R  FL I R   +   +
Sbjct: 301 ILIKDRERFLLIPREESSKNKI 322


>gi|329117162|ref|ZP_08245879.1| tRNA(Ile)-lysidine synthetase [Streptococcus parauberis NCFD 2020]
 gi|326907567|gb|EGE54481.1| tRNA(Ile)-lysidine synthetase [Streptococcus parauberis NCFD 2020]
          Length = 427

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 65/289 (22%), Positives = 110/289 (38%), Gaps = 32/289 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+AVSGG DSM LL  LH    ++   +I  +   V+H  R  +  E  Y+    
Sbjct: 18  QHQRVLIAVSGGVDSMNLLHFLH---VNQKNLEINIAIAHVNHKQRLESDQEEAYLESWA 74

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +  I     ++          + AR+ RYA   +  +T N + ++TAH  DDQ+ETV+M
Sbjct: 75  KKNNIPFYQTAFSGHFS----ESKARDFRYAFFKKIMETENYSALVTAHHADDQVETVFM 130

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    + +     C +     +  + RPFL   + D+        I   ED SN  +
Sbjct: 131 RLLRGTRLRHLSSIKECQSF---GSGQLIRPFLTIAKADLPD------IFHFEDASNQTN 181

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R       L  L  +  +F      +     +L+     +     +      L
Sbjct: 182 DYLRNRIRNQ----YLPELRQENPQFDFALRDLAQESHLLVQALKDLIYADKLNQFSYFL 237

Query: 258 NIDSTLLF-----YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
                + F     YL R +  +             E ++  ++  K G 
Sbjct: 238 GNSRAVQFFCFQEYLERFTDLVI-------SKSQFEDLLSLVRRKKIGT 279


>gi|315612149|ref|ZP_07887064.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 49296]
 gi|315315710|gb|EFU63747.1| tRNA(Ile)-lysidine synthetase [Streptococcus sanguinis ATCC 49296]
          Length = 425

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 107/262 (40%), Gaps = 22/262 (8%)

Query: 9   VRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +  F+R       + +++A+SGG DSM L   L +  ++     I+     V+H  R  +
Sbjct: 7   LNHFLRKEYFKKHSKVVLALSGGLDSMFLFHLLSTYQNELG---IELILAHVNHKQRSES 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             E   +  +     +   + S+          A ARE RY    +  K + AT ++TAH
Sbjct: 64  DWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKEVGATALVTAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ MR  R    +   L+G+ ++ + D  + I RP L   ++D         I
Sbjct: 120 HADDQVETILMRLIRGSRLRY--LTGIKESQVVD-GIEIIRPLLHFHKKDFPP------I 170

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
              ED +N ++ + R R+R       L  L  +  + +   + +   ++        +  
Sbjct: 171 VHFEDQTNQENTYFRNRIRNR----YLPELEKENPRLKSALLDLGREISDYQATITELSK 226

Query: 247 RSIIAISQDILNIDSTLLFYLL 268
           +  +    ++ +        LL
Sbjct: 227 KIDVEDLNELFSYSQQTQGILL 248


>gi|78357070|ref|YP_388519.1| ketose-bisphosphate aldolase, class-II [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219475|gb|ABB38824.1| Ketose-bisphosphate aldolase, class-II [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 357

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 120/301 (39%), Gaps = 18/301 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L A SGG+DS  LL+ LH +            A+ +DH LR+ + D+  +VS +CS   I
Sbjct: 59  LAACSGGADSTALLLILHYLAPRMGH---TVVAVHLDHALRQESADDAHFVSQLCSAAGI 115

Query: 83  AHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
               V    +      + GL  A R+ARYA  ++ A   +  +I T H  DD  E V MR
Sbjct: 116 RLFSVRTDVADLAAAGRCGLEEAGRKARYAFYAKTAALFSRPVICTGHHADDLKEDVLMR 175

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R      +G  GM   I       + RP L   +  + +FL      W ED SN+D  
Sbjct: 176 LIRGAGWPALG--GMQAVIPERS---LLRPLLVTEKYKLTTFLEACRCPWREDASNSDPS 230

Query: 199 FERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           F R R+R  +  +   +  +    + +  +      +    ++P+ L       I I++ 
Sbjct: 231 FTRNRIRNTIIPLLQQENPSFGTTITELWEAAAADRDYWTDVLPE-LAPDKNGQIFIARS 289

Query: 256 ILN-IDSTLLFYLLRVSA-AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            L  +       L + +  A+  GQ       ++E      + GK      G+    R  
Sbjct: 290 TLQGLHKAGRLRLYKKALEALGAGQPLHASIMALEHAWHRNQGGKCIQFPGGKTARIRHG 349

Query: 314 N 314
            
Sbjct: 350 G 350


>gi|295114733|emb|CBL35580.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [butyrate-producing
           bacterium SM4/1]
          Length = 482

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 128/353 (36%), Gaps = 45/353 (12%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  ++     L     ++V +SGG+DS+ LL  L  +   RS   I+  A+ V H LR
Sbjct: 21  EKVSRYMEKNGMLKAGQRVVVGLSGGADSVCLLSLLSDM---RSSLSIRLRAVHVHHGLR 77

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            + A  +  +  ++C +L I   +       +    +     A R  RY    + A    
Sbjct: 78  GQEADRDADFSRELCRKLDIPFILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWE 137

Query: 119 ATL-----------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
                         I  AH  DD  ET+     R    +G+         +  +   + R
Sbjct: 138 EEEREQEGAALPVRIAVAHHGDDSAETILYHLFRGSGLRGLA-------GIAPVRGRVIR 190

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKF 223
           P L   R++I  +L +  +S+  D +N  + + R R+R  +  + +  +       + + 
Sbjct: 191 PLLCVSRQEILEYLREEGLSYVTDSTNLLNDYTRNRLRNQILPMAVQEINRGAVEHILRA 250

Query: 224 QDLRVKVNNAVAMLIPKYLT---------VHMRSIIAISQDIL-NIDSTLLFYLLRVSAA 273
            ++  + +        K+L          +    ++A+    L ++      Y++R + +
Sbjct: 251 GEIIGEADQFFRERAGKFLKKEGIWKESCLEKSRMLAVPVSALGSLAHIEQGYVIREAFS 310

Query: 274 ICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
             G  +       +E ++  L  ++G    +  G        N +   +    
Sbjct: 311 ELGWPLRNIDASHIESILSLLDGRTGAGADLPGGVRAERVYENLVLKKKERAA 363


>gi|116510859|ref|YP_808075.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106513|gb|ABJ71653.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 422

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 133/340 (39%), Gaps = 43/340 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +   ++F  +    + IL+A+SGG DSM L   L+ +   R+   I+     ++H 
Sbjct: 8   FLKIVTKEKYFAEN----SKILLALSGGKDSMTLFNWLYEL---RAKLHIELGIAHINHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  +  E + +  + S L I   V  +            ARE RY    +     N  +
Sbjct: 61  LRPESDFEEQSLRKMASDLEIPIFVDRFSGEFT----EQKAREFRYHFFEKIMIAENYDV 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH   D +ETV MR       +   L G+ D   +     + RP L+  +E++ + +
Sbjct: 117 LLTAHHQGDVVETVLMRQITGRPLR--SLQGIADCQPFAKG-QLIRPLLKFTKEELDAAV 173

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
                 + ED +N    + R R+R  +    +  L  +  +F      +++ + M +   
Sbjct: 174 ------FYEDSTNQGVDYFRNRIRNQL----IPELTKENPQFSQAISDLSSEIKMAL-TV 222

Query: 242 LTVHMRSIIAISQDI-----LNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVML 292
           +   +  +  I + I     ++    L  ++L+   A        P      +  E ++ 
Sbjct: 223 INQRISELEIIDEKISYHKFISQTKELQHFILQAFFA------QYPEIKVSKKKFEEILH 276

Query: 293 FLKSGKRGCVSIG-RVVIDRRANFLWITRAVRNLPTLILY 331
            ++  ++    +       +  +  +I    R L T  L 
Sbjct: 277 IIRRPQQYSAQLNKDFQFVKTKDHFYI--EKRKLITASLE 314


>gi|300814650|ref|ZP_07094901.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511269|gb|EFK38518.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 440

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 17/201 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++     +L+A+SGG DSM     L++V+  +    +      V+H +RE AK++  +V
Sbjct: 13  KTIEKNDRLLLAISGGPDSM---YLLYNVIDLKKEFNLDLLVCHVNHGIRENAKNDENFV 69

Query: 74  SDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            D+C +      I H  ++    +       A R  RY    E+A   +   I+TAH  +
Sbjct: 70  IDICKKFNINYNIKHVNMNEYAKENNMSAEEAGRFLRYEFFKENA---DGRKILTAHNLN 126

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET+  R  R     G G+ G+   + ++ N  I RP L   R  I  +L + N+ + 
Sbjct: 127 DQAETILTRIFR-----GTGVKGLAGILQFNNN--IVRPILNIPRYQIEDYLNKNNLKYV 179

Query: 190 EDPSNTDDRFERVRVRRFVRD 210
            D +N    + R R+R  +  
Sbjct: 180 IDETNLKSDYTRNRIRIELIP 200


>gi|282882540|ref|ZP_06291161.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B]
 gi|281297682|gb|EFA90157.1| tRNA(Ile)-lysidine synthase [Peptoniphilus lacrimalis 315-B]
          Length = 440

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 17/201 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++     +L+A+SGG DSM     L++V+  +    +      V+H +RE AK++  +V
Sbjct: 13  KTIEKNDRLLLAISGGPDSM---YLLYNVIDLKKEFNLDLLVCHVNHGIRENAKNDENFV 69

Query: 74  SDVCSR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            D+C +      I H  ++    +       A R  RY    E+A   +   I+TAH  +
Sbjct: 70  IDICKKFNINYNIKHVNMNEYAKENNMSAEEAGRFLRYEFFKENA---DGRKILTAHNLN 126

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET+  R  R     G G+ G+   + ++ N  I RP L   R  I  +L + N+ + 
Sbjct: 127 DQAETILTRIFR-----GTGVKGLAGILQFNNN--IVRPILNIPRYQIEDYLNKNNLKYV 179

Query: 190 EDPSNTDDRFERVRVRRFVRD 210
            D +N    + R R+R  +  
Sbjct: 180 IDETNLKSDYTRNRIRIELIP 200


>gi|312880244|ref|ZP_07740044.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
 gi|310783535|gb|EFQ23933.1| tRNA(Ile)-lysidine synthetase [Aminomonas paucivorans DSM 12260]
          Length = 442

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 81/298 (27%), Positives = 116/298 (38%), Gaps = 24/298 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A+SGG DS+ L   L      R           +DH +R+ +  +  +VS++ SR  I
Sbjct: 24  LIAISGGGDSVALAGLLRRYWRGRQVW------AHLDHGIRKESSRDALFVSELASRWGI 77

Query: 83  AHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
              V         +    L  A R  RY  +   A   +   I  AHT DDQ ET+ +  
Sbjct: 78  PCVVERVSLPALRERGESLEMAGRRVRYGFLERTASNASLAFIALAHTADDQAETLLLHL 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G G+ G+        N    RP    RRE++RSFL +  ISW ED SN D  F
Sbjct: 138 AR-----GTGIWGLAGMPERRGN--WVRPLATFRREELRSFLREEGISWVEDLSNQDRMF 190

Query: 200 ERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
            R RVR  +          A  L+ +       +V   +A    + L    R    +   
Sbjct: 191 LRNRVRHDLIPWFETHLNPAFSLRAQALAAEARQVRERLAGEAEQCLRWLAREAFPVLAC 250

Query: 256 ILNIDSTLLFYLLRVSAAICGGQIS-LPGY--RSMERVMLFLKSGKRGCVSI-GRVVI 309
                ++ L   LR+ A    G+I  LP    R  E +   +    R      GRV +
Sbjct: 251 WDRRSASSLPLPLRMEALRLQGRILGLPTLECRRCEELAQRIGQPGRFRFPWRGRVEV 308


>gi|125622900|ref|YP_001031383.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491708|emb|CAL96627.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069638|gb|ADJ59038.1| cell cycle protein mesJ [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 422

 Score =  193 bits (491), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/340 (19%), Positives = 134/340 (39%), Gaps = 43/340 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +   ++F  +    + IL+A+SGG DSM L   L+ +   R+   I+     ++H 
Sbjct: 8   FLKIVTKEKYFAEN----SKILLALSGGKDSMTLFNWLYEL---RAKLHIELGIAHINHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  +  E + +  + S L I   V  +            ARE RY    +     N  +
Sbjct: 61  LRPESDFEEQALRKMASDLEIPIFVDRFTGEFT----EQKAREFRYHFFEKIMIAENYDV 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH   D +ETV MR       +   L G+ D   +     + RP L+  +E++ + +
Sbjct: 117 LLTAHHQGDVVETVLMRQITGRPLR--SLQGIADCQPFAKG-QLIRPLLKFTKEELDAAV 173

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
                 + ED +N    + R R+R  +    +  L  +  +F      +++ + M +   
Sbjct: 174 ------FYEDSTNQGVDYFRNRIRNQL----IPELTKENPQFSQAISDLSSEIKMAL-TV 222

Query: 242 LTVHMRSIIAISQDI-----LNIDSTLLFYLLRVSAAICGGQISLP----GYRSMERVML 292
           +   +  +  + + I     ++    L  ++L+   A        P      +  E ++ 
Sbjct: 223 INQKISELEIVDEKISYHKFISQTKELQHFILQAFFA------QYPEIKVSKKKFEEILH 276

Query: 293 FLKSGKRGCVSIG-RVVIDRRANFLWITRAVRNLPTLILY 331
            ++  ++    +       +  ++ +I    R L T  L 
Sbjct: 277 IIRRPQQYSAQLNKDFQFVKTKDYFYI--EKRQLITASLE 314


>gi|227499301|ref|ZP_03929413.1| tRNA(Ile)-lysidine synthase [Anaerococcus tetradius ATCC 35098]
 gi|227218652|gb|EEI83886.1| tRNA(Ile)-lysidine synthase [Anaerococcus tetradius ATCC 35098]
          Length = 456

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 127/341 (37%), Gaps = 26/341 (7%)

Query: 3   LSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ I  +R  +   + +    HI++  SGG DS  L+  L  ++ + +F     +   ++
Sbjct: 1   MTIINKLRECIIENKLIDEGDHIIIGASGGPDSQFLIYGLKDLMKEMNF---TITLAHLN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAK 115
           H  R+ A  + + V     +L +        +     +       A R  RY    +   
Sbjct: 58  HLHRKEAILDEQLVEATAKKLGLDFKKKACSMDSYAKQEGLSSEDAGRRLRYEFFRQLKG 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 I  AH  DDQ ETV MR  R    +G+         +   N  I RP L  R+ 
Sbjct: 118 DNPKAKIAVAHNLDDQAETVLMRIIRGTGIEGL-------RAMDYKNDDIIRPILDIRKS 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228
           +I ++L + NI++  D +N +  + R ++R         +      +L    K  +    
Sbjct: 171 EILAYLNENNIAYAIDKTNLETDYTRNKIRLELIPSIEKINPNFKSSLVNLSKLSRQEIE 230

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSM 287
                +A +  + L++  +  I+  +D    +   L   ++R +      +I      ++
Sbjct: 231 ISEAYLANIYEECLSLRQKDAISFKKDKFEALSRALRARIIRYAIFDLKKKIRDISKENI 290

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT-RAVRNLPT 327
           +  +          +    +V  +  NF  ++    +NL  
Sbjct: 291 DSFLALTSLANGKAIIKDDLVFYKSYNFYRLSINEGKNLMP 331


>gi|291087307|ref|ZP_06571896.1| tRNA(Ile)-lysidine synthase [Clostridium sp. M62/1]
 gi|291075292|gb|EFE12656.1| tRNA(Ile)-lysidine synthase [Clostridium sp. M62/1]
          Length = 482

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 62/353 (17%), Positives = 128/353 (36%), Gaps = 45/353 (12%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  ++     L     ++V +SGG+DS+ LL  L  +   RS   I+  A+ V H LR
Sbjct: 21  EKVSRYMEKNGMLKAGQRVVVGLSGGADSVCLLSLLTDM---RSSLSIRLRAVHVHHGLR 77

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            + A  +  +  ++C +L I   +       +    +     A R  RY    + A    
Sbjct: 78  GQEADRDADFSRELCRKLDIPFILKMENAHQEAQNRRISEEEAGRLLRYEAFEQEAARWE 137

Query: 119 ATL-----------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
                         I  AH  DD  ET+     R    +G+         +  +   + R
Sbjct: 138 EEEREQEGAALPVRIAVAHHGDDSAETILYHLFRGSGLRGLA-------GIAPVRGRVIR 190

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKF 223
           P L   R++I  +L +  +S+  D +N  + + R R+R  +  + +  +       + + 
Sbjct: 191 PLLCVSRQEILEYLREEGLSYVTDSTNLLNDYTRNRLRNQILPMAVQEINRGAVEHILRA 250

Query: 224 QDLRVKVNNAVAMLIPKYLT---------VHMRSIIAISQDIL-NIDSTLLFYLLRVSAA 273
            ++  + +        K+L          +    ++A+    L ++      Y++R + +
Sbjct: 251 GEIIGEADQFFRERAGKFLKKEGIWKESCLEKSRMLAVPVSALGSLAHIEQGYVIREAFS 310

Query: 274 ICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
             G  +       +E ++  L  ++G    +  G        N +   +    
Sbjct: 311 ELGWPLRNIDASHIESILSLLDGRTGAGADLPGGVRAERVYENLVLKKKERAA 363


>gi|325267936|ref|ZP_08134585.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Kingella denitrificans ATCC 33394]
 gi|324980622|gb|EGC16285.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Kingella denitrificans ATCC 33394]
          Length = 432

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 72/292 (24%), Positives = 113/292 (38%), Gaps = 11/292 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I V +SGG+DS+ LL AL ++     FG    SA+ V H L   A D  ++  D 
Sbjct: 20  LRGKRICVGLSGGADSVVLLHALAALRDT--FGLADLSAVHVHHGLNAAADDWQQFCRDY 77

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             RL +  S    +    + G+ AAAR ARYA+ +      NA  +  AH  DDQ+ET +
Sbjct: 78  AQRLGVGFSAAQVQVDAGKLGIEAAARTARYAVFA----EQNADFVALAHHRDDQIETFF 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           + + R    +   LS M +         + RP L   R +I  +     + +  D SN +
Sbjct: 134 LAALRGGGLR--ALSAMPEQRALTEKTVLWRPLLAFSRAEIEQYAQDNALMFVHDDSNEN 191

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT--VHMRSIIAISQ 254
             F R  +R          L    +        +    A+L          +R    + Q
Sbjct: 192 PAFLRNWLRGRWLPDLAARLPHYAEHLHSSIALLQEERALLEEVAAQDWQAVRCAQGLHQ 251

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
                 S      L  + A   G +  P   S+     +L+  +RG   + R
Sbjct: 252 ARWQAFSPARQRQLLHTFARQYG-LGAPTAGSLHLWADWLRQAERGEWRLPR 302


>gi|209528292|ref|ZP_03276753.1| tRNA(Ile)-lysidine synthetase [Arthrospira maxima CS-328]
 gi|209491278|gb|EDZ91672.1| tRNA(Ile)-lysidine synthetase [Arthrospira maxima CS-328]
          Length = 344

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 123/330 (37%), Gaps = 26/330 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             V   +RS   L     +LVAVSGG DSM L+  L  +    ++   + +    DH  R
Sbjct: 12  AKVHISLRSRNLLPSGEGLLVAVSGGQDSMCLIRLLLDLQEKWNW---RIAIAHCDHQWR 68

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             +     Y+  +    ++    ++           AAARE RY ++ E A+T N   ++
Sbjct: 69  RDSVANADYIEQLGKIWQVPCYRLTAPQIPKT---EAAAREWRYQVLGEIAQTDNYGYVV 125

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSF 180
           T HT  D+ ET+     R     G+        I          + RP L   R++   F
Sbjct: 126 TGHTKSDRAETLLYNLIRGSGADGLSSLVWSRPIFGRETETKPILVRPLLEITRKETGEF 185

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
             QR++   ED +NTD  + R R+R  +     +    K+++      ++  A    + +
Sbjct: 186 CQQRDLPIWEDSTNTDVSYARNRIRHQLIPELENKFNPKVEQALAQTAELLRADVEYLEQ 245

Query: 241 YLTVHMRSIIAISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                 R  IA +            + +    L   ++R        + +   +  +E++
Sbjct: 246 QADELYRVAIASAPCNNGYRVNRHQLKSAPLALQRRVMRRLLEEVLRKGT--NFEQIEKL 303

Query: 291 MLFLKSGKRGCV--SIGRVVIDRRANFLWI 318
              + +  R       G  +      ++W+
Sbjct: 304 TRLISAPNRSQSDPFPGGAIAQVEGEWIWL 333


>gi|170757599|ref|YP_001783167.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum B1 str. Okra]
 gi|169122811|gb|ACA46647.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum B1 str. Okra]
          Length = 468

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/275 (24%), Positives = 121/275 (44%), Gaps = 24/275 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77
             I+V VSGG DSM     LH +   ++  +IK      ++H +R   +  + +YV + C
Sbjct: 19  DKIIVGVSGGPDSM---CLLHMLCLLKNQLRIKDIYVAHINHGVRGAESDADEKYVENFC 75

Query: 78  --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ E
Sbjct: 76  YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +
Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDKYELNPRIDKT 189

Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245
           N    + R ++R     +++D     +   + +F ++  K NN +  +      +Y T  
Sbjct: 190 NLQSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
           ++ +I   +  L    ++   +LR +       + 
Sbjct: 250 LQRVIIDKRAFLE-HESISTRILREAILYINQNLY 283


>gi|294777183|ref|ZP_06742640.1| tRNA(Ile)-lysidine synthetase [Bacteroides vulgatus PC510]
 gi|294449052|gb|EFG17595.1| tRNA(Ile)-lysidine synthetase [Bacteroides vulgatus PC510]
          Length = 442

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 121/336 (36%), Gaps = 42/336 (12%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF   I+      +       +LVA+SGG+DS        ++L           A   + 
Sbjct: 9   MFHWNIQKYIEEKQLFTLHDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNF 61

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR E +  + R+V+++C  L +   V  +      S+    +  AARE RY    +  K
Sbjct: 62  HLRGEESDRDERFVNELCKGLGVTLHVTHFDTVTYASRHHVSVEMAAREMRYDWFEQLRK 121

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                +I  AH  DD +ET  +   R     G+         +   N  I RP L   R+
Sbjct: 122 ERGMAVIAVAHHRDDSVETFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQ 174

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228
           DI  +L      +  D +N  D + R ++R       R +      ++    ++  D+ +
Sbjct: 175 DILDYLRCLRQGYVTDSTNLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSL 234

Query: 229 KVNNAVAMLIPKYLTVHMRSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             N  +     + +      +I  + ++  +  + LLF +L              G+ S+
Sbjct: 235 IYNKEIEAGKERVMEKSGHILISRLMEE--SAPAALLFEIL-----------HPLGFNSV 281

Query: 288 E--RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
           +   V   L +            + R    L I R 
Sbjct: 282 QIGDVFRSLSAQSGKRFVSAGWEVLRDRTELIIRRR 317


>gi|254884290|ref|ZP_05257000.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides sp. 4_3_47FAA]
 gi|319640622|ref|ZP_07995340.1| cell-cycle protein [Bacteroides sp. 3_1_40A]
 gi|254837083|gb|EET17392.1| tRNA(Ile)-2-lysyl-cytidine synthase [Bacteroides sp. 4_3_47FAA]
 gi|317387756|gb|EFV68617.1| cell-cycle protein [Bacteroides sp. 3_1_40A]
          Length = 434

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 121/336 (36%), Gaps = 42/336 (12%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF   I+      +       +LVA+SGG+DS        ++L           A   + 
Sbjct: 1   MFHWNIQKYIEEKQLFTLHDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
            LR E +  + R+V+++C  L +   V  +      S+    +  AARE RY    +  K
Sbjct: 54  HLRGEESDRDERFVNELCKGLGVTLHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRK 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                +I  AH  DD +ET  +   R     G+         +   N  I RP L   R+
Sbjct: 114 ERGMAVIAVAHHRDDSVETFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQ 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228
           DI  +L      +  D +N  D + R ++R       R +      ++    ++  D+ +
Sbjct: 167 DILDYLRCLRQGYVTDSTNLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSL 226

Query: 229 KVNNAVAMLIPKYLTVHMRSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             N  +     + +      +I  + ++  +  + LLF +L              G+ S+
Sbjct: 227 IYNKEIEAGKERVMEKSGHILISRLMEE--SAPAALLFEIL-----------HPLGFNSV 273

Query: 288 E--RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
           +   V   L +            + R    L I R 
Sbjct: 274 QVGDVFRSLSAQSGKRFVSAGWEVLRDRTELIIRRR 309


>gi|270296347|ref|ZP_06202547.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273751|gb|EFA19613.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 424

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 105/275 (38%), Gaps = 32/275 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE  + F         ILVA+SGG+DS+        +L           A   +  LR  
Sbjct: 10  IERHKLFS----LDDKILVALSGGADSVA-------LLRLLLSLGYTCEAAHCNFHLRGA 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C   R+    V +    +  +    +  AARE RYA   +  +  +A 
Sbjct: 59  ESDRDEHFVRQLCLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAA 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET+ +   R     G+         +   N  I RP L   R++I  +
Sbjct: 119 VIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPRNGHIVRPLLCLDRKEIVGY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L     ++  D +N  D + R ++R       + +      ++    +   D     N  
Sbjct: 172 LESIGQAYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILKTAEHLDDAASIYNIG 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +     +  T    SI A+ Q+      T+LF +L
Sbjct: 232 IEEAKLRVKTPEGISIGALRQEA--APETVLFEIL 264


>gi|83592433|ref|YP_426185.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170]
 gi|83575347|gb|ABC21898.1| PP-loop protein [Rhodospirillum rubrum ATCC 11170]
          Length = 462

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 129/353 (36%), Gaps = 16/353 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DS+ LL       ++R     + +A+  DH LR  +  E R V      L 
Sbjct: 34  IAVGVSGGVDSLTLLAFAARWAAERGG---RCTAVCFDHGLRAASAGEARLVETTARSLG 90

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
               V+ W    P +G+  AAR AR   +           ++ AH  DDQ ETV  R  R
Sbjct: 91  AEAVVLRWAGPPPSSGVQEAARRARLDGLLGWCAGAGVLHLLLAHHRDDQAETVLQRLGR 150

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G+       +        I RPFL   R  I +   +  + W EDPSN D  ++R
Sbjct: 151 GSGADGLAAMAALSS---RGEARILRPFLEVPRAAIEASARRIGLVWAEDPSNHDPHYDR 207

Query: 202 VRVRRFVRDIDLHA-----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            R+R     +D        L     +  D R      ++ L+           + + +D 
Sbjct: 208 ARLRAAAAPLDQAGLSAKALAASAARLGDDRAFWARHLSALLAGATRACGEGWLVLDRDA 267

Query: 257 LNIDST-LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
           L           L  +A    G       R +  ++    +  +     G +   +    
Sbjct: 268 LAASDPWAAARALAWAAGAIAGSERAADPRPIAALLATPPAPGQVHALAGCLWQSKPRGA 327

Query: 316 LWITRAVRNLPTL--ILYPEETTVWDGRY--QFQNLSDSLIQIGPQSYRKADV 364
           L + R  R L      + P E+ +WDGR+  +      ++  +G   ++K   
Sbjct: 328 LVLCRECRGLDRRRWAVPPGESLLWDGRWLCRAGRGGLAVSALGAAGWQKLAP 380


>gi|46579870|ref|YP_010678.1| hypothetical protein DVU1459 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449286|gb|AAS95937.1| conserved domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234129|gb|ADP86983.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris RCH1]
          Length = 390

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 81/325 (24%), Positives = 124/325 (38%), Gaps = 36/325 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H +VA+SGG+DS  LL+ LH +   R    +  SA+ VDH LR  +  E R     C  L
Sbjct: 64  HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 120

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I  +V +    +     + G   A R+ARY L++    +  A  I T H   D  E V 
Sbjct: 121 GIPLAVHTLTVDELAAVWRVGTEEAGRKARYDLLAAALPSPAADWICTGHHLGDLAEDVL 180

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R      +G   +CD         I RP L   ++ + +FL    +SW EDPSN  
Sbjct: 181 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTEKDRLEAFLATLGVSWTEDPSNAS 235

Query: 197 DRFERVRVRRFVRDI-------------DLHALYLKMKKFQDLRVKVNNAVA-------- 235
           D + R R+R  V  +             DL  L      F + R     + A        
Sbjct: 236 DTYLRNRMRHGVIPLLTAENPGFLDQVRDLWQLAHIDADFWETRTAATLSAAPASPSHVE 295

Query: 236 -MLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVML 292
                 +   H    I + +  L  +       L +      G GQ       +++   +
Sbjct: 296 GEASAPHDAAHGAESIRLPKTTLTGLHQAERLRLFKEVLRRMGEGQARAETLLALDAAWV 355

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLW 317
             + G R   +  +    RR + ++
Sbjct: 356 AGRGGTRFMFAGCKTATVRRGDIIF 380


>gi|270290204|ref|ZP_06196430.1| tilS/hprT [Pediococcus acidilactici 7_4]
 gi|270281741|gb|EFA27573.1| tilS/hprT [Pediococcus acidilactici 7_4]
          Length = 457

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 10/257 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A ++VAVS G DS  L+ AL   L+  +  + +     V+H LR  +  E  ++   C++
Sbjct: 20  APVIVAVSTGVDSTVLINAL---LAATNLAENRLIIAHVNHQLRSQSVQEEDFLRQWCAK 76

Query: 80  LRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            R+      W +   P TG+ AAAR  RY   ++  +  NAT ++TAH   +Q E+  M+
Sbjct: 77  RRLMFVSTKWPRELHPDTGVEAAARRFRYDFFAKVMQRYNATTLLTAHNATEQAESFLMQ 136

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R        L G  +   +     + RPFL+  +  + +   + +++W ED +N  D 
Sbjct: 137 VVRGGWL--SQLRGTPEERSFATG-RLVRPFLKISKPTLVALAQENHLTWFEDETNQQDD 193

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKV---NNAVAMLIPKYLTVHMRSIIAISQD 255
           + R RVR  +           ++     + ++   +  +  +  + L    +        
Sbjct: 194 YLRNRVRNQLLPALQAENPRVVEHIGQYQTEITEQDQLIKEISRQKLAQLRQGSQYQLPK 253

Query: 256 ILNIDSTLLFYLLRVSA 272
                      LL+   
Sbjct: 254 FKAESRLWQKQLLKQLV 270


>gi|116628949|ref|YP_814121.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus gasseri ATCC
           33323]
 gi|238853548|ref|ZP_04643920.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri 202-4]
 gi|311111243|ref|ZP_07712640.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri MV-22]
 gi|122274053|sp|Q046D9|TILS_LACGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|116094531|gb|ABJ59683.1| tRNA(Ile)-lysidine synthetase, MesJ [Lactobacillus gasseri ATCC
           33323]
 gi|238833844|gb|EEQ26109.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri 202-4]
 gi|311066397|gb|EFQ46737.1| tRNA(Ile)-lysidine synthase [Lactobacillus gasseri MV-22]
          Length = 431

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 63/317 (19%), Positives = 130/317 (41%), Gaps = 17/317 (5%)

Query: 7   ESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E   FF ++ +       L+A SGG DS+ L   L + L + S    +     +DHCLR+
Sbjct: 3   EFTNFFTKNNIEIKNKKFLLAASGGPDSVALFHMLVNFLPNPSK---QLIVAHLDHCLRK 59

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123
            +  E   +  + +  +I     SW  +  PQTG+ A ARE RYA ++   K      ++
Sbjct: 60  DSYLESELLQKLTTAFKIKLIEKSWPVALHPQTGIEAKAREFRYAFLAHTGKKYQVDYLL 119

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DD +E + ++  R      M    +   +    ++ + RP ++  ++ +  +  +
Sbjct: 120 TAHHGDDLIENILLKFIRSGDVAEMNSLQIVGNL---DSMRLLRPLIKYSKDQLLEYDKR 176

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             + + ED +N +D   R R+R +V  +    L  +     +   + + + A+L     +
Sbjct: 177 NGLDYIEDETNFEDDTLRNRLRHYVVPL----LKKETNHLVENAYRFSESAALLSDCQNS 232

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGC 301
                I+ I  D           L+ ++            Y+   + + F  ++  K+  
Sbjct: 233 FFESLILPI--DFGKALRGKKSDLINLNENQLAAFFDYLVYKKWHQRVHFDEIRRRKKAT 290

Query: 302 VSIGRVVIDRRANFLWI 318
            +     +    ++ ++
Sbjct: 291 FNKENFQLIFYQDYYYL 307


>gi|149197877|ref|ZP_01874926.1| hypothetical protein LNTAR_05301 [Lentisphaera araneosa HTCC2155]
 gi|149139098|gb|EDM27502.1| hypothetical protein LNTAR_05301 [Lentisphaera araneosa HTCC2155]
          Length = 417

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 70/281 (24%), Positives = 115/281 (40%), Gaps = 26/281 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     +++  SGG+DSM LL  + S+      G++    +  +H LR + +K + ++  
Sbjct: 7   LKGEKRLVL-FSGGADSMALLHLMQSL------GELDI-VLHFNHNLRGDDSKQDEQFCR 58

Query: 75  DVCSRLRIAHSVVSWKNSKPQ---TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           + C    +   VV+    K +    G    AR  R   + +H    N   I  AH  DD 
Sbjct: 59  NYCEDNGLELIVVNLDLDKERHANEGDEQLARRLRLQFLEDHYCGWN---IYLAHHLDDV 115

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+ +MR+ R       GL  +         L + RP L   RE +RS+L + N++W ED
Sbjct: 116 KESFFMRAMRGA--NSSGLCALRRERKLGT-LTLIRPLLDYSREQLRSYLKENNLTWRED 172

Query: 192 PSNTDDRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
            SN D  + +R  VR  +    +  L    K  Q     +      L        M+   
Sbjct: 173 SSNQDADYCDRNYVRNEL----MPKLSRLGKGLQHTLKHIAEDDDYLQSAAEKELMQGF- 227

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
             S+  LN+ + L   +LR       G   +P   S+ R++
Sbjct: 228 -TSKLFLNLHAALKARVLRFFLE-NQGLAYVPTQASINRLL 266


>gi|307707910|ref|ZP_07644385.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis NCTC 12261]
 gi|307615975|gb|EFN95173.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis NCTC 12261]
          Length = 425

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 35/270 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A +++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKVVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRVESDWEEQELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFLS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNKENHYFRNRIRNS----YLPELEKENPRFRDAILSIGNEI------- 214

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
               +   +AI++   NID   L+ LL  S
Sbjct: 215 ----LDYDLAIAELSKNIDVENLYQLLSYS 240


>gi|218283935|ref|ZP_03489803.1| hypothetical protein EUBIFOR_02399 [Eubacterium biforme DSM 3989]
 gi|218215514|gb|EEC89052.1| hypothetical protein EUBIFOR_02399 [Eubacterium biforme DSM 3989]
          Length = 394

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 119/310 (38%), Gaps = 31/310 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +  +VA SGG DSM LL  L+    D            V++  R+TA  +   V D C +
Sbjct: 2   SKCVVACSGGPDSMALLDQLNKQGKD-------IVVAHVNYKHRDTADRDENIVKDYCEK 54

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   V        +    A AR+ RYA   E A   +A ++  AH  DD +ET   + 
Sbjct: 55  YDIP--VRVCYPVHEKGNFQAWARDVRYAFFEEVADAFDAKILYVAHQMDDVIETYLFQK 112

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R+      GL              I RP L   + +++ +  +  +S+  D SN  + +
Sbjct: 113 NRNMICDWYGL----KEKSIRQGYQIIRPLLNFTKSELQQYCNENGVSFGIDESNLTNHY 168

Query: 200 ERVRVRR-FVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
            R  +R   +  +   +  A  LK++   ++      A+      +    + S++     
Sbjct: 169 TRNVIRHTQIEKMSRDEKEAWILKIQNENEVWQIKRKAIEEFFKDW-NKDVDSLLDQEDA 227

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
            L +D+ L   L                 + ME + + LK  +   + I   +++R    
Sbjct: 228 WLYLDTFLFHSL-----------HHHFSKKYMEELCVQLK--RNVLIEIENYLLERHGGK 274

Query: 316 LWITRAVRNL 325
           L+   + +++
Sbjct: 275 LYFMPSPKDV 284


>gi|315222833|ref|ZP_07864718.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211]
 gi|315188069|gb|EFU21799.1| tRNA(Ile)-lysidine synthetase [Streptococcus anginosus F0211]
          Length = 425

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 105/253 (41%), Gaps = 16/253 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +   +L+A+SGG DSM LL  L+     R   +I+     ++H +R+ +  E   +  + 
Sbjct: 18  HHRKVLLAISGGLDSMTLLDWLYKY---REKLEIEIFLAHINHGVRKESDFEEEELKKIA 74

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +L ++    S+            AR+ RYA   +     N T ++TAH  DDQ ET++M
Sbjct: 75  KKLGVSIFTSSFSGPFS----EQKARDFRYAFFKKIMLEENCTALVTAHHADDQAETIFM 130

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   +SGM +   +  N  + RP L  ++ +         I   ED +N ++
Sbjct: 131 RILRGS--RLFHISGMKEKQKFA-NGELIRPLLSFQKSNFPP------IFHFEDWTNQEN 181

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R     +         K   +L  +++     L      +   S+        
Sbjct: 182 HYLRNRIRNEYFPLLEQENPQFRKHLIELGTEISQMQDALAYLTKNIVATSLQEFQSQPY 241

Query: 258 NIDSTLLFYLLRV 270
           ++ S LL   L+ 
Sbjct: 242 SVQSFLLQAYLKK 254


>gi|118580663|ref|YP_901913.1| tRNA(Ile)-lysidine synthetase [Pelobacter propionicus DSM 2379]
 gi|118503373|gb|ABK99855.1| tRNA(Ile)-lysidine synthetase [Pelobacter propionicus DSM 2379]
          Length = 485

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 88/423 (20%), Positives = 149/423 (35%), Gaps = 37/423 (8%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71
           + L  P   +++A+SGG+DS  LL  L  +               ++H LR   +  +  
Sbjct: 17  QQLFAPGDTVILALSGGADSCVLLDILAGLTE----FSPCLVIAHLNHQLRGAESDGDEL 72

Query: 72  YVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +   +  R  +     S   +    +    L  A R AR   + + A++ +AT I  AH 
Sbjct: 73  FCRSLAERYGLPFRSRSLDVAALARRQGLNLEDAGRRARLEFLEDVARSFHATAIALAHH 132

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV MR  R     G+        + +       RP L  RR +I ++L  R + 
Sbjct: 133 ADDQAETVLMRLLRGSGMTGL------RGMSFRGPGGRIRPLLNSRRCEIDAYLRARGLE 186

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
             ED SN D  F R R+R  +  +         ++       + +   +L      +  R
Sbjct: 187 HREDASNRDTAFLRNRIRHELLPLLEQYNPAIRERLVGTAALLADEDDLLEGMAEDLAAR 246

Query: 248 SI------IAISQDILNIDSTLLFYLL--RVSAAICGGQISLPGY--RSMERVMLFLKSG 297
           +       ++ S   L  +   L   L  R+ A + G    +     ++ME +M   +  
Sbjct: 247 ACHFGSDSVSCSLTRLEGEPQALKRRLVRRILAHLTGNGEHVTRRHIQAMEDLMDSPRPN 306

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW-DGRYQFQNLSDSLIQIGP 356
               +  G   +          R  R LP   L  E   +   GRY   + S     +  
Sbjct: 307 ATLNLFRGIRAVREYGTL----RLSRGLPPEDLPHEARELPGPGRYILSDGS----LLTL 358

Query: 357 QSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVF 416
                   P+ +P  +A   L   P     +    P  R    F +  +      F +  
Sbjct: 359 APATAPPDPASLPATVALFDLEKAPFPWRVRT-FTPGDRIAP-FAMAGSKKVKELFMERR 416

Query: 417 IPR 419
           +PR
Sbjct: 417 VPR 419


>gi|229917403|ref|YP_002886049.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
 gi|229468832|gb|ACQ70604.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sp. AT1b]
          Length = 408

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 105/264 (39%), Gaps = 21/264 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LVAVSGG DS+ LL  L                  V H LRE + +E  +V+ V + 
Sbjct: 2   KKVLVAVSGGVDSIVLLDRLVK-------QGWDVGVAHVHHGLREASDEEYTFVAHVAAS 54

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++A      +    +    A  R+ARY    +         + TAH  DD LETV ++ 
Sbjct: 55  YQVAFH--GTRLHFQEGASQAHYRKARYHFFEDVMNEHGYDTLATAHHADDVLETVLIQL 112

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R+  E    + G+ +  ++     + RP L+  +  +  +  +  ++W ED +N +  +
Sbjct: 113 HRNVIE----VKGIPERRVFGRG-TLIRPLLKETKAQLIEYARKNELAWREDATNQEVTY 167

Query: 200 ERVRVRR-------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            R R+R         V    +  +Y   K+      +   +    I   + + M++    
Sbjct: 168 LRNRIRHEIIPRLKQVWPTVVDDVYDTAKQVYAEWDRRYQSCEQWIEANVELGMKAFHVK 227

Query: 253 SQDILNIDSTLLFYLLRVSAAICG 276
             +   + S   + + R+ +   G
Sbjct: 228 LDEFNRLSSLERYTVARLLSRRYG 251


>gi|160892003|ref|ZP_02073006.1| hypothetical protein BACUNI_04462 [Bacteroides uniformis ATCC 8492]
 gi|156858481|gb|EDO51912.1| hypothetical protein BACUNI_04462 [Bacteroides uniformis ATCC 8492]
          Length = 422

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 105/275 (38%), Gaps = 32/275 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE  + F         ILVA+SGG+DS+        +L           A   +  LR  
Sbjct: 8   IERHKLFS----LDDKILVALSGGADSVA-------LLRLLLSLGYTCEAAHCNFHLRGA 56

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C   R+    V +    +  +    +  AARE RYA   +  +  +A 
Sbjct: 57  ESDRDEHFVRQLCLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAA 116

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET+ +   R     G+         +   N  I RP L   R++I  +
Sbjct: 117 VIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPRNGHIVRPLLCLDRKEIVGY 169

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L     ++  D +N  D + R ++R       + +      ++    +   D     N  
Sbjct: 170 LESIGQAYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILKTAEHLDDAASIYNIG 229

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +     +  T    SI A+ Q+      T+LF +L
Sbjct: 230 IEEAKLRVKTPEGISIGALRQEA--APETVLFEIL 262


>gi|300311198|ref|YP_003775290.1| PP-loop superfamily ATPase [Herbaspirillum seropedicae SmR1]
 gi|300073983|gb|ADJ63382.1| PP-loop superfamily ATPase, implicated in cell cycle control,
           protein [Herbaspirillum seropedicae SmR1]
          Length = 449

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 86/381 (22%), Positives = 142/381 (37%), Gaps = 18/381 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS  LL        +   G  + + + V H L   A   + +    C++L 
Sbjct: 13  LAVAYSGGLDSTVLLWVAAQWARENG-GTSRLAPLHVHHGLSPHADAWLAHAQACCAQLG 71

Query: 82  IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +       +      +G+  AAR ARYA +    +   A +++TAH  DDQ ETV ++  
Sbjct: 72  LVLQSERVQLEGVADSGVEEAARLARYAALGRLCRQQGARVLLTAHHLDDQAETVLLQLL 131

Query: 141 RDYAEKGMGLSGMCDTILY---DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R     G+     C+T      D  L ++RPFL   R  + +     ++ W ED SN+D 
Sbjct: 132 RGSGLAGLSGMDRCNTAPALLGDDRLLMARPFLGVTRAQLEAVADAMSLKWIEDESNSDP 191

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQD 255
           R+ R  +R  V            ++          A  +L  + +    H R    +   
Sbjct: 192 RYTRNALRHQVMPALGQVFPGYQQRLARAAGHAQGAQELLREVAEQDLAHCREDEHLRMP 251

Query: 256 ILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDR 311
            L  +       L+R    + G  + +P    M+ +   +L      + CVS     + R
Sbjct: 252 PLRELSEQRFLNLMRHWFGLRG--MRMPSAAWMQEMRHQLLQADVEAQLCVSHPDGEVHR 309

Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPI 371
               +++    R  P        T  WDG+ Q   L      +        D   G  P 
Sbjct: 310 YRERVFLA-PRRMPPDEGAVA--TLRWDGQAQ-WRLPAWYGTLHFDRIGGDDARPGFDPA 365

Query: 372 IAQ-RALSSMPSKEGGKPLLA 391
             Q ++L +     G +  LA
Sbjct: 366 WLQGQSLLACGRSGGERIRLA 386


>gi|284929532|ref|YP_003422054.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A]
 gi|284809976|gb|ADB95673.1| tRNA(Ile)-lysidine synthetase [cyanobacterium UCYN-A]
          Length = 319

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 128/327 (39%), Gaps = 22/327 (6%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M+ S    V   +++   L     ILVAVSGG DS+ LL  +  +   R     + S   
Sbjct: 1   MWTSLHTKVHKTLQNSLILPPKKRILVAVSGGQDSLCLLKIIMDL---RIKWDWEVSIAH 57

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            DH    +      +V  +     I   +   +  K    +   ARE RY ++ E A+  
Sbjct: 58  CDHGW-PSDTGISDHVKKISEEWNIDFYLKRTQILKITESI---AREWRYKVLLEVAREN 113

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N T I+T HT  D  ETV     R     G  LS + +T     ++ + RP L   R + 
Sbjct: 114 NFTAIVTGHTLSDLAETVLYNLIRGAGSHG--LSVLTNTRPLTNSINLVRPLLNTSRTET 171

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             F  Q N+   ED  NT+  + R R+R+ +          +++K      KV  A +  
Sbjct: 172 LFFCRQLNLPVWEDEVNTNFDYARNRIRKQLVPYLKLNFNPQVEKTLYQASKVLKAESDY 231

Query: 238 IPKYLTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMER-- 289
           + K     ++      +  LN      I   L   ++R+       ++  P +  +E   
Sbjct: 232 LEKEAGKILKLASNKKKTQLNKKILQTIPLALQRRVIRMFLQH--NKLQAPNFEQVEEGV 289

Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFL 316
            ++    G +      +VV++   +++
Sbjct: 290 KLINSPHGSQTSSFSVQVVLEVYDDYI 316


>gi|91214572|ref|ZP_01251545.1| putative cell-cycle protein [Psychroflexus torquis ATCC 700755]
 gi|91186999|gb|EAS73369.1| putative cell-cycle protein [Psychroflexus torquis ATCC 700755]
          Length = 437

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 33/322 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F S I+S   F   L  P   L+A+SGG DS+ L    +S+        + F     +  
Sbjct: 5   FKSHIQSE--FPELLTTP--FLIAISGGLDSVVLAHLCNSL-------HLDFGLSHCNFQ 53

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR   +  +  +V ++   L+    + +++      + ++ +   AR+ RY    E  +T
Sbjct: 54  LRGLDSTRDEEFVENLSISLKCEFFIKTFQTESIAKESKSSIQLTARKLRYDWFQELIET 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   ++TAH  +D LET  +   R    KG+       T +   N  I RP L+  + +
Sbjct: 114 TSHNYLLTAHHLNDDLETFIINLSRSTGLKGL-------TGIPQRNSHILRPLLKFSKAE 166

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           ++ + ++ NI W ED SN   ++ R  +R  +    L      ++ F+    K+      
Sbjct: 167 LKEYAIKHNIYWREDQSNASTKYLRNEIRHKIVPSLLELNSQFLESFESTLEKL-KQTEH 225

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFY---LLRVSAAICGGQISLPGYRSMERV--M 291
           LI  Y     +S+++   +  NID   L        +   +  G     G+   E V  +
Sbjct: 226 LIKDYTASLHQSLVSEEANRFNIDIEKLKTHPNPRGILYQLLEGF----GFTQWEDVYHL 281

Query: 292 LFLKSGKRGCVSIGRVVIDRRA 313
           L  ++GK       ++V DR  
Sbjct: 282 LDAQTGKIVKSPTHQLVKDRNK 303


>gi|330894611|gb|EGH27272.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 445

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 104/309 (33%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +  SGG DS  LL  L  +    S       AI V H L+  A     +   VC  L +A
Sbjct: 30  IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V   N  P   +  AAR+ARY   ++        +++T    DDQ ET+  R  R  
Sbjct: 88  FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R ++  +  Q  ++W EDPSN D RF R  
Sbjct: 145 GVRG--LAAMPDQRILGRG-HLVRPLLAVSRVELEGYAHQHGLNWVEDPSNDDSRFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260
           +R  V  +                  +  A  +L    +     +        L +    
Sbjct: 202 LRSDVLPLLTSRWPQASISLARTACHLGEAQQLLDELAVQDLAGAQATTPFAWLGLPVLS 261

Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                   +      LR   A          +   E +        R    +    + R 
Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320

Query: 313 ANFLWITRA 321
              +W   A
Sbjct: 321 QGCIWWVPA 329


>gi|330985127|gb|EGH83230.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 445

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 104/309 (33%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +  SGG DS  LL  L  +    S       AI V H L+  A     +   VC  L +A
Sbjct: 30  IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRRVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V   N  P   +  AAR+ARY   ++        +++T    DDQ ET+  R  R  
Sbjct: 88  FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R ++  +  Q  ++W EDPSN D RF R  
Sbjct: 145 GVRG--LAAMPDQRILGRG-HLVRPLLAVSRVELEGYAHQHGLNWVEDPSNDDSRFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260
           +R  V  +                  +  A  +L    +     +        L +    
Sbjct: 202 LRSDVLPLLTSRWPQASTSLARTACHLGEAQQLLDELAVQDLAGAQATTPFAWLGLPVLS 261

Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                   +      LR   A          +   E +        R    +    + R 
Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320

Query: 313 ANFLWITRA 321
              +W   A
Sbjct: 321 QGCIWWVPA 329


>gi|322515783|ref|ZP_08068728.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis ATCC
           49124]
 gi|322125745|gb|EFX97063.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis ATCC
           49124]
          Length = 280

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 72/278 (25%), Positives = 116/278 (41%), Gaps = 22/278 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ILVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+    
Sbjct: 17  QHKKILVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEYEEDYLRHWA 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              +I        ++        AAR  RY    +  K  + + ++TAH  DDQ ET++M
Sbjct: 74  KEHKIPFH----YSAFSGKFSENAARTFRYDFFKQIMKEADYSALVTAHHADDQAETIFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   LSG+CD   +     I RPFL   +  +            ED SN+  
Sbjct: 130 RLLRGSRLR--HLSGICDVRSFGTG-QIIRPFLHIPKAQLPIT------FHFEDKSNSSL 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R       +  L  +  KF++    + + +A L+ K L    + I      + 
Sbjct: 181 AYLRNRIRLT----YIPTLSQENPKFKEHLCLLADEIA-LMGKALEELTKDITITDLSVF 235

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
              +  + YLL  S       + LP      ++M +L+
Sbjct: 236 QQQTDAVQYLLIQSYLESFPDLQLP-KGQFNQLMSYLR 272


>gi|302390614|ref|YP_003826435.1| tRNA(Ile)-lysidine synthetase [Thermosediminibacter oceani DSM
           16646]
 gi|302201242|gb|ADL08812.1| tRNA(Ile)-lysidine synthetase [Thermosediminibacter oceani DSM
           16646]
          Length = 471

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 102/278 (36%), Gaps = 23/278 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L     +LV VSGG DS+     LH +L  R    I  +   ++HC R + + ++  +V 
Sbjct: 17  LQKGDKVLVGVSGGPDSVC---LLHLLLRHREEFGISLAVAHLNHCFRGQESDEDETFVR 73

Query: 75  DVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           D+  +  +        V     K       AAR  RYA      +   A  +  AH  +D
Sbjct: 74  DLAGQWGLPFYGEKVDVPAYIKKTGLSPEDAARRVRYAFFERVRRETGAGKVALAHNSND 133

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           + ETV M   R    +G+         +  +     RP +   R+ I  +L +  I +  
Sbjct: 134 REETVLMNIFRGTGLEGL-------VGIEAVRDHYIRPLIEVERDSIEDYLKREGIPYRI 186

Query: 191 DPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVK----VNNAVAMLIPKYL 242
           D +N    + R ++R  +  +        L   +K+  ++       +         + +
Sbjct: 187 DSTNLQTFYYRNKLRLELIPLIKREYCPHLSAALKRLSEIASVDISLLGKLTDEAFARVV 246

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
                 ++  ++    +   L + ++R +     G + 
Sbjct: 247 RAMPDGVMIDTKKFNELHEALKYRVVRKAVERILGDLR 284


>gi|332653694|ref|ZP_08419438.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Ruminococcaceae
           bacterium D16]
 gi|332516780|gb|EGJ46385.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Ruminococcaceae
           bacterium D16]
          Length = 470

 Score =  192 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 130/338 (38%), Gaps = 42/338 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R +   + +L AVSGG+DS+ LL  L+ +  + +F      A   DH LR   +  + ++
Sbjct: 13  RLIPPGSTVLCAVSGGADSVYLLHRLYCLRRELNF---TLVAAHYDHRLRGAESTQDAKF 69

Query: 73  VSDV------CSRL-----------RIAHSV----VSWKNSKPQTGLMAAAREARYALIS 111
           V +         RL            +        V+ + ++ + GL   AR+ RYA + 
Sbjct: 70  VEEFVRLCCPAERLYAPEGPGKELPGVRLITGGGDVAGEAARLRQGLEETARQMRYAFLQ 129

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A+ + A LI TAH   D  ETV +   R    +G+                + RP L 
Sbjct: 130 TAAQEVGANLIATAHNASDNAETVLLHLGRGSGLRGLAGM-------PPKRGNLIRPLLT 182

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQ 224
             RE+I ++L  R + W ED +N DD + R R+R  V  +        L  +       +
Sbjct: 183 TSREEIENYLRYRGLPWREDATNRDDAYARNRLRHQVLPVLEDLFPGFLSRISQTCAHLR 242

Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY 284
           +    +++  A  +          +I  +  + +   ++     R+              
Sbjct: 243 EDEDYLSSLAAQAVESARR-EGEDLILPAAALADQPQSVAIRGARMLIGSMTAGNDNCAA 301

Query: 285 RSMERVMLFLK-SGKRGCVSI-GRVVIDRRANFLWITR 320
             +E ++   + S     + + G +   RR   L ++R
Sbjct: 302 PHLEGLLNLCRGSDPSARLDLPGGLTARRRYGELVLSR 339


>gi|312130162|ref|YP_003997502.1| tRNA(ile)-lysidine synthetase [Leadbetterella byssophila DSM 17132]
 gi|311906708|gb|ADQ17149.1| tRNA(Ile)-lysidine synthetase [Leadbetterella byssophila DSM 17132]
          Length = 430

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 95/245 (38%), Gaps = 28/245 (11%)

Query: 10  RFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66
           + F++ L  P+    LV VSGG DSM LL   +S          +      +  LR E A
Sbjct: 4   KIFLKYLPNPSKEKFLVGVSGGKDSMALLDLFYS-------EGFQVEVAHANFQLRGEEA 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLI 122
             + + V   C    I   V  +   K     +T    AARE RY    +     N T +
Sbjct: 57  NLDEQLVHTYCRVKNIPFHVKRFDTKKHAKESKTSTQMAARELRYQWFYQLLAQRNLTAV 116

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AH   D +ET+++   +    KG+         +      I RP L    E I  +L 
Sbjct: 117 ALAHHRRDNIETLFLNITKGTGPKGL-------QGIPPRGENIIRPILEATPEQILQYLE 169

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVA 235
           +  I W ED SN++  ++R ++R  V  +               +++F++L +    A  
Sbjct: 170 ENKIPWREDQSNSETYYQRNKIRHLVLPLLKEINPGLEDTFLQNLERFRNLNLIFQEAHR 229

Query: 236 MLIPK 240
               +
Sbjct: 230 EFESQ 234


>gi|313884543|ref|ZP_07818304.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620327|gb|EFR31755.1| tRNA(Ile)-lysidine synthetase [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 492

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 101/259 (38%), Gaps = 7/259 (2%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
                  +++ VSGG DSM LL  +  +L+ +     +      +H LR  A  +   V 
Sbjct: 17  QWQQTDKLVMGVSGGLDSMVLLDLMIKLLALKENQGKEIIVAHFNHHLRSDADLDASLVE 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C   ++ + +  W+    +    + AREARY   +       + +++TAH  +D  ET
Sbjct: 77  SFCHHHQLTYFIGEWQEPSHK-NTESLAREARYHFFANVLAASQSQVLVTAHHSNDLAET 135

Query: 135 VYMRSQRDYAEKGM-GLSGMCDTILYDLNLW-----ISRPFLRCRREDIRSFLLQRNISW 188
           + +R  R  + KG+ G+      IL           + RP L   + ++  +     + +
Sbjct: 136 LMIRLIRGTSFKGLAGIRRYSQRILTTDQGQGVATDLVRPLLSISKAELLDYAEHFKLEY 195

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            ED +N+     R RVR+ +           +   + +      A       Y+    + 
Sbjct: 196 REDSTNSSRHHLRNRVRQDLLPWLEGENPQFLANLESMTQAAAEAYQENFETYMAQEDQL 255

Query: 249 IIAISQDILNIDSTLLFYL 267
           ++A+ ++   +D      L
Sbjct: 256 VLALGENGWILDRPTWRQL 274


>gi|86135031|ref|ZP_01053613.1| PP-loop family protein [Polaribacter sp. MED152]
 gi|85821894|gb|EAQ43041.1| PP-loop family protein [Polaribacter sp. MED152]
          Length = 436

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 152/415 (36%), Gaps = 51/415 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F + I     F++       +L+A+SGG DS+ L    H +         + +    +  
Sbjct: 5   FKNHINKNFPFLKD----KKLLIAISGGLDSVVLTHLFHQL------NIAEIALAHCNFK 54

Query: 62  LR-ETAKDEVRYVSDVCS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           LR + +  +  +V+ +      ++ I        +   +  +   ARE RY    E    
Sbjct: 55  LRNKASDLDEEFVNKLSQITSNQIFIKSFQTEKISENQKKSIQITARELRYNWFQELMDE 114

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                I+TAH  DD LET  +   R     G        T +  +N  I R  L   R +
Sbjct: 115 HQLDYILTAHHADDNLETFLINLTRGSGLDGF-------TGIPAINGNIVRTLLPFSRSE 167

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I +F    NI W ED SN   ++ R ++R  V  +        ++ F +    +     +
Sbjct: 168 ILNFAKSNNIEWREDASNASIKYVRNKIRHKVIPVLKEINPSLLESFSNSIHHLKEVQEI 227

Query: 237 LIPKYLTVHMRSIIAISQDI---------LNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
           +  K + V  +S++   + I         L      L+ +L+         +        
Sbjct: 228 VNDKIVDVTKQSVVKEKESIKIDIQKIKELANPKAYLYQILKEYHFTEWNDVY------- 280

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL 347
              +L  +SGK       R++ DR  +FL +++   N   +    E   +     Q  NL
Sbjct: 281 --HLLDSQSGKAVYSKTHRLLKDR--SFLILSKLENNTNEVYRITENDVL---ISQPLNL 333

Query: 348 S-DSLIQIGPQSYRKADVPSGI---PPIIAQRALSS--MPSKEGGKPLLAPFSRF 396
           +   + +I PQ+     V   +   P  + ++       PS   GK  L+ + + 
Sbjct: 334 NFQEVTEIKPQNKHSIYVDKDLLNYPLYLRKKQNGDYIYPSGMQGKKKLSKYFKD 388


>gi|300114833|ref|YP_003761408.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus watsonii C-113]
 gi|299540770|gb|ADJ29087.1| tRNA(Ile)-lysidine synthetase [Nitrosococcus watsonii C-113]
          Length = 442

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 130/355 (36%), Gaps = 30/355 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL +L  +           SAI ++H L   + +   +  + C+ L + 
Sbjct: 23  VAYSGGLDSQVLLYSLVQLGPK--LPGSLISAIHINHGLHPRSGEWSLHCRESCAALGVG 80

Query: 84  HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           +  V      +      AAAREARY  +    +      ++TA   DDQ+ET+ ++  R 
Sbjct: 81  YEEVKVNGHPRKGESPEAAAREARYGALRS--RIARGECLLTAQHQDDQVETLLLQLLRG 138

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                                 + RP L   R +++ +  Q  + W EDPSN D  F+R 
Sbjct: 139 GGPA---GLAAMAKAAPFGQGRLLRPLLSFSRSELKIYAEQEGLVWVEDPSNFDLEFDRN 195

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
            +R  +    L  L+ +         +     A           R ++A+S D   +   
Sbjct: 196 YLRHKI----LPLLWQRWPGLGRTLSRAALHQADAAWLLDQQAQRELVAVSADKQGLSVQ 251

Query: 263 LLFYL--------LRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDR 311
            L  L        LR        Q+ LP    ++R++   L      +  V+     + R
Sbjct: 252 ALQALAPPQRRNSLRYWFKQM--QLPLPDSIHLQRILEEVLLAPEDAQPLVAWPGTEVRR 309

Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366
             + L+   A + LP       E  VW+G       +     + P+  R   + +
Sbjct: 310 YRDRLY---AQKPLPPHDAA--EVLVWEGVEPLALPAGVGGVLVPKRTRGLGLDA 359


>gi|257487064|ref|ZP_05641105.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 445

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 104/309 (33%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +  SGG DS  LL  L  +    S       AI V H L+  A     +   VC  L +A
Sbjct: 30  IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRRVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V   N  P   +  AAR+ARY   ++        +++T    DDQ ET+  R  R  
Sbjct: 88  FELVRV-NVDPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M D  +      + RP L   R ++  +  Q  + W EDPSN D RF R  
Sbjct: 145 GVRG--LAAMPDQRILGRG-HLVRPLLAVSRVELEGYAHQHGLHWVEDPSNDDSRFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260
           +R  V  +                  +  A  +L    +     + +      L +    
Sbjct: 202 LRSDVLPLLTSRWPQASISLARTACHLGEAQQLLDELAVQDLAGAQVTTPFAWLGLPVLS 261

Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                   +      LR   A          +   E +        R    +    + R 
Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320

Query: 313 ANFLWITRA 321
              +W   A
Sbjct: 321 QGCIWWVPA 329


>gi|317480455|ref|ZP_07939551.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 4_1_36]
 gi|316903402|gb|EFV25260.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 4_1_36]
          Length = 422

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 61/275 (22%), Positives = 105/275 (38%), Gaps = 32/275 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           IE  + F         ILVA+SGG+DS+        +L           A   +  LR  
Sbjct: 8   IERHKLFS----LDDKILVALSGGADSVA-------LLRLLLSLGYTCEAAHCNFHLRGA 56

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  +  +V  +C   R+    V +    +  +    +  AARE RYA   +  +  +A 
Sbjct: 57  ESDRDEHFVRQLCLEHRVTLHTVHFNTEQEAKERHISIEMAARELRYAWFEKTREACSAA 116

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I  AH  DD +ET+ +   R     G+         +   N  I RP L   R++I  +
Sbjct: 117 VIAVAHHQDDSVETLLLNLIRGTGINGL-------RGIRPRNGHIVRPLLCLDRKEIVGY 169

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           L     ++  D +N  D + R ++R       + +      ++    +   D     N  
Sbjct: 170 LESIGQAYVTDSTNLQDEYTRNKIRLNLLPMMQEINPSVKESILKTAEHLDDAASIYNIG 229

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +     +  T    SI A+ Q+      T+LF +L
Sbjct: 230 IEEAKLRVKTPEGISIGALRQEA--APETVLFEIL 262


>gi|294654541|ref|XP_456602.2| DEHA2A06402p [Debaryomyces hansenii CBS767]
 gi|199428964|emb|CAG84558.2| DEHA2A06402p [Debaryomyces hansenii]
          Length = 502

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 20/289 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +R   ++  +P  I+VA+SGG DS+ L   L           ++ +AI++DH  R  +
Sbjct: 9   EVLRKCFKNGTFPERIVVALSGGVDSLCLTYLLGQFKRIYK-PSLQITAITIDHKYRAGS 67

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREARYALISEHAKTINATLI 122
             E   V  +     + H V + +         T     ARE RY +  +  + ++   +
Sbjct: 68  GKEAEKVGVLVRPWGVKHIVKTLEYEDRDIGKITNFEEVAREKRYDIFEQVCRELDVKSL 127

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-GLS-----GMCDTILYDLN--LWISRPFLRCRR 174
           + AH  +DQ+ET   R Q++ +  G+ GL       +  T   +    + + RP L   +
Sbjct: 128 IVAHNLNDQIETFLQRLQQNSSIFGLVGLRTVDHLPISPTSPSENGDSIHVVRPLLSFDK 187

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
            +I     +  I W ED +N+D     R  +R  V ++  H L       QD+ ++  NA
Sbjct: 188 SEIIETCTKNGIRWFEDHTNSDIHLTRRNLLRHIVSEVVPHRL-----DNQDIPIEECNA 242

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL-LRVSAAICGGQISL 281
           ++++  + L      I+++  ++ +  + +  +L LR   ++    +SL
Sbjct: 243 LSLVSKESLVKTHNEILSLVCEMQHQIANIENHLKLRGLFSLDKKNLSL 291


>gi|300704459|ref|YP_003746062.1| tRNA(ile)-lysidine synthase [Ralstonia solanacearum CFBP2957]
 gi|299072123|emb|CBJ43455.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum CFBP2957]
          Length = 462

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 148/391 (37%), Gaps = 16/391 (4%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +   FV S   P  + VA+SGG DS  LL A  +   D +   ++  A+ V H L+  
Sbjct: 11  VAACAAFVVSGGRPT-VAVALSGGRDSAALLHA-TAAWRDAAGAPVRLVALHVHHGLQAD 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A         + + + +   V     S     G+  AAREARYA +        ATL++T
Sbjct: 69  ADAWEAACVRMAAAVDVECHVRRVHVSVDAGRGVEEAAREARYAALDALCAETGATLLLT 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ ETV ++  R     G+    M           + RP+L   R DI +++   
Sbjct: 129 AHHLDDQAETVLLQLLRGAGLDGLSAMPMERL----GGATLLRPWLDVPRSDIEAYVRTH 184

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            ++W +DPSN D R+ R  +R  +  +  H  A    + +      +    +  +    L
Sbjct: 185 ALAWVDDPSNDDARYARNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIDEIAQADL 244

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGC 301
                +      D+  +        LR   A  G +         +   +L  ++    C
Sbjct: 245 ARIAPAGTLALADLAALSGPRQRAALRAWLAGAGLRAVSSRRLEDLRAQLLTARTDSALC 304

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
           V +    + R     WI   V   P     P +  +   R+         + +       
Sbjct: 305 VRLPGAQVRRYRGQAWI--EVAGQPE--CEPADCLITVSRFNLAQPEVQRVDVAEWGGAL 360

Query: 362 ADVPSGIPPIIAQ--RALSSMPSKEGGKPLL 390
              P+    I A+  RA  S+ ++ GG+ ++
Sbjct: 361 LFSPAQADGIDARILRARLSLTARRGGERIV 391


>gi|154247011|ref|YP_001417969.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2]
 gi|154161096|gb|ABS68312.1| tRNA(Ile)-lysidine synthetase [Xanthobacter autotrophicus Py2]
          Length = 368

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 138/332 (41%), Gaps = 21/332 (6%)

Query: 4   SPIE--SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           SPIE  ++            IL+AVSGG DS  LL       + R+ G     A +VDH 
Sbjct: 12  SPIEDGALDALFAPFTPHPRILIAVSGGPDSTALLYLAARWRAGRASGP-DLIAATVDHG 70

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  A  E   V    + L + H ++ W+ +KP  G+  AAREARY L+++ A+   AT 
Sbjct: 71  LRAEAAAEAEAVGAFATFLGVPHRILIWQGAKPTHGIQEAAREARYDLLADAAREAGATA 130

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AHT DDQ ETV  R  R       GLSGM      D  L + RP L   +  + + L
Sbjct: 131 IALAHTRDDQAETVLFRLARGSGL--SGLSGMRGDAARD-GLALLRPLLDVPKARLVATL 187

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-------- 233
              ++++  DPSN+D RF R R+R     +    L  +       R+   +         
Sbjct: 188 EAASVAFVRDPSNSDPRFARPRLRAMAPTLAGEGLDARRLAVLARRIARADQALEAATDA 247

Query: 234 -VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
             A +I      H  ++    +    +   +   LL  +    G +  +     +E +  
Sbjct: 248 AEAAVIRLGAEEHPGAVSLDVRAFAALPDEIALRLLGRAIQKVGTEGPV-ELAKLEALYE 306

Query: 293 FLKSGKR-----GCVSIGRVVIDRRANFLWIT 319
            LK+           ++   ++  R   L ++
Sbjct: 307 ALKAAAHVPSGPFRRTLAGALVSLRGAALRVS 338


>gi|255994856|ref|ZP_05427991.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Eubacterium saphenum ATCC 49989]
 gi|255993569|gb|EEU03658.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Eubacterium saphenum ATCC 49989]
          Length = 351

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/250 (26%), Positives = 98/250 (39%), Gaps = 23/250 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78
             ++V +SGG DS+ LL  L+ +            A+ +DH LR   +  +  +    C 
Sbjct: 22  DKVVVGLSGGPDSVALLHCLNEL-------GYDCIAVHIDHSLRGCESDGDAEFARTFCH 74

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA----KTINATLIMTAHTFDD 130
              I   +  +       +   G+  AAR  RY + +  A           I  A   +D
Sbjct: 75  DRDIPFKMFKFDCKRYAKEEALGVEEAARNKRYEVFAAVADGFIAQGKNVCIAVAQNQND 134

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q+ET+ MR  R    +G  L G+           I RP L   REDI +FL + NI +  
Sbjct: 135 QVETLIMRLIRGTGIEG--LCGIDVKRKSRTGASIVRPILNKSREDIMAFLEEENIPYRL 192

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           D SN++  + R RVR  +  ID    +      K  +   LR+  N     L  K LT  
Sbjct: 193 DSSNSEPDYFRNRVRLALARIDESKPFGDEIDSKFIEKSILRLCENAKADALFLKELTDA 252

Query: 246 MRSIIAISQD 255
                AI   
Sbjct: 253 AYEKAAIEDS 262


>gi|91792927|ref|YP_562578.1| tRNA(Ile)-lysidine synthetase-like protein [Shewanella
           denitrificans OS217]
 gi|91714929|gb|ABE54855.1| tRNA(Ile)-lysidine synthetase-like protein [Shewanella
           denitrificans OS217]
          Length = 476

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/231 (25%), Positives = 90/231 (38%), Gaps = 12/231 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A +++A SGG DS  L   L   L  +   +I    + V H L   A     +     + 
Sbjct: 27  AKLVLAYSGGVDSEVLAAGLS--LFSQFHPEIDCRLLHVHHGLSAHADSWTEHCRKRAAF 84

Query: 80  LRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             +   V      K +   L A AR ARY  I++H       +++TAH  DDQLET+ + 
Sbjct: 85  YGLPLIVEKVSVQKGKRESLEAKARAARYHAIAQHL--HQNDILLTAHHEDDQLETLLLA 142

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +R    KG+   G C       + W+ RP L   R+ I +      +   ED SN DD 
Sbjct: 143 LKRGQGPKGLAAMGECQ---RKDHYWLLRPLLSVSRQQIEALAASEALVHIEDDSNQDDS 199

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           F+R  +R  +    + AL  +   +     +     A             +
Sbjct: 200 FDRNFLRLEI----IPALKRRWPSYAQTASRSARLCAEQQAAIEEEAASRL 246


>gi|15606915|ref|NP_214296.1| cell cycle protein MesJ [Aquifex aeolicus VF5]
 gi|6016543|sp|O67728|TILS_AQUAE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|66360363|pdb|1WY5|A Chain A, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
 gi|66360364|pdb|1WY5|B Chain B, Crystal Structure Of Isoluecyl-Trna Lysidine Synthetase
 gi|160285466|pdb|2E21|A Chain A, Crystal Structure Of Tils In A Complex With Amppnp From
           Aquifex Aeolicus.
 gi|160285467|pdb|2E21|B Chain B, Crystal Structure Of Tils In A Complex With Amppnp From
           Aquifex Aeolicus.
 gi|160285468|pdb|2E21|C Chain C, Crystal Structure Of Tils In A Complex With Amppnp From
           Aquifex Aeolicus.
 gi|160285469|pdb|2E21|D Chain D, Crystal Structure Of Tils In A Complex With Amppnp From
           Aquifex Aeolicus.
 gi|160285496|pdb|2E89|A Chain A, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
           With Atp, Magnesium Ion, And L-Lysine
 gi|160285498|pdb|2E89|C Chain C, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
           With Atp, Magnesium Ion, And L-Lysine
 gi|160285499|pdb|2E89|D Chain D, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
           With Atp, Magnesium Ion, And L-Lysine
 gi|2984151|gb|AAC07685.1| cell cycle protein MesJ [Aquifex aeolicus VF5]
          Length = 317

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 122/315 (38%), Gaps = 34/315 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+A SGG DS+ L   L  + +  S  ++       +H LRE+A+ +  +  +    
Sbjct: 25  RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVAL--AHFNHMLRESAERDEEFCKEFAKE 82

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             +   V    V     + +  L  A R  RY  + E  ++     I TAH  +D LET 
Sbjct: 83  RNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETS 142

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G GL G+   +  +    I RP    +R +I  +   + + W ED +N 
Sbjct: 143 LLFFTR-----GTGLDGLIGFLPKEE--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNY 195

Query: 196 DDRFERVRVRRFVRD------IDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           +    R R+R  V         +L   +LKM K  +  R  +      L  +    +   
Sbjct: 196 EVSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVKKGNCLD 255

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RV 307
           +  + +  L     L   ++R              Y  +E V   L+ G  G V++G   
Sbjct: 256 VKKLKEKPL----ALQRRVIRKFIGEK-------DYEKVELVRSLLEKG--GEVNLGKGK 302

Query: 308 VIDRRANFLWITRAV 322
           V+ R+  +L  +  V
Sbjct: 303 VLKRKERWLCFSPEV 317


>gi|46446273|ref|YP_007638.1| hypothetical protein pc0639 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|61216530|sp|Q6MDI6|TILS_PARUW RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|46399914|emb|CAF23363.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 458

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/356 (21%), Positives = 148/356 (41%), Gaps = 23/356 (6%)

Query: 3   LSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           L+ I  V+ F++        +L+A+SGG+DS+ L   L   L+ R  G + F    VDH 
Sbjct: 11  LNVINQVKRFIKKYCKSTQPLLLALSGGADSLSLFYCL---LACRLEGILSFHVAHVDHG 67

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            RE +  E   + ++  + ++ +  +    S+    L  A R+ R     E     N   
Sbjct: 68  WREESAKEATILKNLAEQHQVPYHQLKIDLSQLAGNLEDACRKQRQKFFKEICLQNNLQA 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +   H  +DQ+ETV  R             G+ + + +D  +   RP L  ++++I +FL
Sbjct: 128 VCLGHQENDQVETVLKRILEGSHW--SHFDGLKERMWHD-QVQFLRPLLGIQKDEILAFL 184

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNA 233
               +   ED +N D+RF R R+RR +      +   K+            +L+      
Sbjct: 185 KGNQLKAFEDGTNCDERFMRARMRRTIIPDLNRSFGKKIDNSLVYIASEMSELKNFFLGR 244

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER---V 290
           V+ L+ + +       + ++    +ID   + YLLR+   I   ++     + ++R    
Sbjct: 245 VSPLLGQIVKGPFGVYLNLANHP-SIDLVEIKYLLRL---ISEQELFFLSRQILQRASEA 300

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN 346
           +  L+      +   ++VIDR   F+   +     P L +    +  + G++  + 
Sbjct: 301 IEKLEPQLSFEMGTKKIVIDRGHFFILSKKTACKNPNLQIS-GSSLQYYGKWMIKT 355


>gi|322392415|ref|ZP_08065875.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780]
 gi|321144407|gb|EFX39808.1| tRNA(Ile)-lysidine synthetase [Streptococcus peroris ATCC 700780]
          Length = 425

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/265 (22%), Positives = 114/265 (43%), Gaps = 24/265 (9%)

Query: 7   ESVRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E +  F+      + + +++A+SGG DSM L   L +   +     I+     V+H  R 
Sbjct: 5   EFLNHFLEKGYFKHHSRVVLALSGGLDSMFLFHLLSTYQKELG---IELFLAHVNHKQRP 61

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            + +E   +  +  ++ +   V  +          A AR+ RY  + +  +   AT ++T
Sbjct: 62  ESDNEEYELRKLAEQVGVPIYVAHFTGDFS----EANARQFRYEFLKKVMRQTVATALVT 117

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ ET++MR  R    +   LS + +   +D    + RP L   ++D        
Sbjct: 118 AHHADDQAETIFMRLIRG--VRLQHLSAIKERQEFDKG-ELIRPLLSFYKKDFPE----- 169

Query: 185 NISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
            I   ED +N ++ + R RVR  ++  ++   + +K + F +L  +V++   +L     T
Sbjct: 170 -IEHFEDATNKENSYFRNRVRNIYLPQLEKENIQVK-RAFLELGKEVSDYQIVLSEFSKT 227

Query: 244 VHMRSIIAISQDILNIDSTLLFYLL 268
           V +  +       L+        LL
Sbjct: 228 VDVEDLT----QFLSFSEATQRVLL 248


>gi|139439222|ref|ZP_01772664.1| Hypothetical protein COLAER_01678 [Collinsella aerofaciens ATCC
           25986]
 gi|133775246|gb|EBA39066.1| Hypothetical protein COLAER_01678 [Collinsella aerofaciens ATCC
           25986]
          Length = 512

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/307 (21%), Positives = 113/307 (36%), Gaps = 30/307 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETA 66
           R+    A +++ VSGG+DS  LL+        +   R    I   +   + V+H LR  A
Sbjct: 21  RTRQQAAPVVLMVSGGADSTALLLMACTSKLDIQDGRGVAPIARERLHVLHVNHHLRGKA 80

Query: 67  KD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL---- 121
            D +  +V ++C++  +   V           + AAARE RYA    + + + A      
Sbjct: 81  SDGDEAFVRELCAQYGLPLCVEHAYFDGESGNIEAAAREVRYAAARRYVRELCAQTGAPR 140

Query: 122 ----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I TAHT  D+ ET  M + +     G+       +I    N+ + RP L     ++
Sbjct: 141 TAARICTAHTSSDRAETFLMNAIKGSGPAGL------SSIPRRRNI-VVRPLLDLTHGEL 193

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKV 230
             +L      W ED SN D  + R  VR  V  +           +    +   D    +
Sbjct: 194 VGYLQVHGQPWREDESNEDISYLRNYVRHRVMPVVAQRNASVCKTIGAACEILGDEDAFL 253

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           +   A      L       + +    L     ++   +   A       + P  R +ERV
Sbjct: 254 SQLSAQAFRSCLRKEAAGALVLDARRLAAAEVVIARRIVRLAIKRIDPGARPEMRHVERV 313

Query: 291 MLFLKSG 297
           +  +  G
Sbjct: 314 LSCVAEG 320


>gi|312796646|ref|YP_004029568.1| tRNA(Ile)-lysidine synthetase TilS [Burkholderia rhizoxinica HKI
           454]
 gi|312168421|emb|CBW75424.1| tRNA(Ile)-lysidine synthetase TilS [Burkholderia rhizoxinica HKI
           454]
          Length = 476

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 131/364 (35%), Gaps = 44/364 (12%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +V     +L   A + +A SGG DS  LL A   VL  R     +  A+ V H L   A 
Sbjct: 16  AVAAQATALHRDASVAIAFSGGIDSTVLLHAATRVLGAR-----RCVALHVHHGLSPHAD 70

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               + +DV  RL +A    +   ++ PQ  + A AR+ARYA + +        ++   H
Sbjct: 71  AWRSHCADVACRLDVAFDCRAVAITRTPQHSVEALARDARYAALEQMCAAHRVRVLWLGH 130

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ETV ++  R     G+    +   +     L   RP L   R  + ++  Q  +
Sbjct: 131 HADDQAETVLLQLLRGAGLPGLAAMPLHRVLP--NGLIHVRPLLPVLRASLDAYARQHTL 188

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD----------LRVKVNNAVAM 236
            W ED SN D R+ R  VRR V    +  L +    ++D             ++   +AM
Sbjct: 189 RWIEDESNADLRYARNAVRRHV----MPTLAVHFPGYRDALARTARHAAAAQRLLEDLAM 244

Query: 237 LIPKYLTVHMRSIIAISQD--------------ILNIDSTLLFYLLRVSAAICG-GQISL 281
           +  +  T   R   A+ +               ++ +       LLR      G   +S 
Sbjct: 245 IDLRACTFASRRAAAMKRSDAPVPVGPMLSRCALVELSHERAVNLLRFWMREAGLATVSA 304

Query: 282 PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA-------VRNLPTLILYPEE 334
                + R +          +      +    N +W  R            P+  L    
Sbjct: 305 ARVEEILRQLREAGDDAALRIEHDEHCLRLYRNRVWWERQDDGAASHDAMPPSTELRWSG 364

Query: 335 TTVW 338
            +VW
Sbjct: 365 QSVW 368


>gi|190575333|ref|YP_001973178.1| putative cell cycle protein [Stenotrophomonas maltophilia K279a]
 gi|190013255|emb|CAQ46889.1| putative cell cycle protein [Stenotrophomonas maltophilia K279a]
          Length = 442

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 121/354 (34%), Gaps = 16/354 (4%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +V  F   +   A +LV  SGG DS  LL  L               A+ V H L+  
Sbjct: 12  LATVTAFPALVPLDAPLLVGYSGGVDSTVLLHWLWRCAQTSGTA---LRAVHVHHGLQPD 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A D V +    C    I  +V   +  +  TGL       +    +  A+      +  A
Sbjct: 69  ADDWVLHCQQQCDAWGIELAVHRVQV-ENGTGLGTEGAARQARRAAFAAELREGETLALA 127

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET  +R+ R     G+        +       + RP L   R  +  +  Q  
Sbjct: 128 QHQDDQAETFLLRALRASGVDGLAAMSTHSRL---GEHPLWRPLLAVPRSALLDYARQHA 184

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           + W EDPSN +D  +R  +R  V  +                        +L  +   + 
Sbjct: 185 LRWIEDPSNAEDHADRNFLRLQVLPLLRQRWPHAAAALAGSATHCRQTRELLDEEDAELI 244

Query: 246 MRSIIAISQDILNIDSTL-LFYLLRVSAAICGGQISLPGYRSMER----VMLFLKSGKRG 300
               +A     L +   +      RV  A   G  + P   S+ +     +L   + ++ 
Sbjct: 245 AHLEVAPRVLSLELLRQMSPRRAARVLRAWVLGHDAAPLPASVLQQALEELLPADTDRQA 304

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
            V   + VI +  +  ++  A   LP+L L  +    WDGR          + +
Sbjct: 305 RVRWQQHVIQQWRDHAYLLPAR--LPSLPL--DWQAEWDGRAPLPLPDGGQLSL 354


>gi|81429211|ref|YP_396212.1| ATPase [Lactobacillus sakei subsp. sakei 23K]
 gi|78610854|emb|CAI55906.1| Putative ATPase of the PP-loop superfamily, cell cycle protein
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 459

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 7/243 (2%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              A ++VA S G DSM LL  L  + +     K +     V+H LR  +  E  Y+   
Sbjct: 17  PTGAKVIVATSTGVDSMVLLTLLQRLPTAL---KPQLIVAHVNHELRTESVAEEAYLRQF 73

Query: 77  CSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C    ++  V  W     PQTG+ AAARE RY           A  ++TAH  DDQLET+
Sbjct: 74  CLENDLSLQVAHWPLQQHPQTGIEAAAREFRYQFFEHLMTAEKADYLVTAHHGDDQLETL 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            M+  R      M   G+     +  +  + RP L   ++D+R + L  NI+  ED +N 
Sbjct: 134 MMKFIRSGELHEM--RGIQSQRPFA-DGTLIRPLLPFAKQDLRDYALANNITSFEDQTNY 190

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           +    R RVR  +           ++       ++   +        T+     + ++  
Sbjct: 191 ETTVLRNRVRHTLVPFLKQENGQILQNANRFSQQLTALLGQQAQLATTLLPLLDLKVTDK 250

Query: 256 ILN 258
           +++
Sbjct: 251 VIS 253


>gi|168183607|ref|ZP_02618271.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Bf]
 gi|237796988|ref|YP_002864540.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Ba4 str. 657]
 gi|182673269|gb|EDT85230.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Bf]
 gi|229260540|gb|ACQ51573.1| tRNA(Ile)-lysidine synthetase [Clostridium botulinum Ba4 str. 657]
          Length = 468

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/275 (24%), Positives = 120/275 (43%), Gaps = 24/275 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77
             I+V VSGG DSM     LH +   +   +IK      ++H +R   +  + +YV + C
Sbjct: 19  DKIIVGVSGGPDSM---CLLHMLCLLKDQLRIKDIYVAHINHGVRGAESNADEKYVENFC 75

Query: 78  --SRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + L      ++      + G+   +A REARY   +   K + A  I TAH  +DQ E
Sbjct: 76  YTNNLGFFSKTINMDKIAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR  R     G GL G+        +L+I RP +   REDI ++  +  ++   D +
Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDDLYI-RPLINVLREDIENYCDRYELNPRIDKT 189

Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVH 245
           N    + R ++R     +++D     +   + +F ++  K NN +  +      +Y T  
Sbjct: 190 NLQSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNNYLEEVSKDKFERYCTKK 249

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
           ++ II   +  L    ++   +LR +       + 
Sbjct: 250 LQRIIIDKRAFLE-HESISTRILREAILYINQNLY 283


>gi|172056094|ref|YP_001812554.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15]
 gi|259533717|sp|B1YGQ4|TILS_EXIS2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|171988615|gb|ACB59537.1| tRNA(Ile)-lysidine synthetase [Exiguobacterium sibiricum 255-15]
          Length = 414

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 99/260 (38%), Gaps = 18/260 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +LVAVSGG DSM L   L+               + V H LR+ + +E   V   
Sbjct: 7   LPKEPLLVAVSGGCDSMVLAHLLYE-------ANHDLMIVHVHHGLRKESDEEAEAVRAW 59

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               R+   +   +  + Q    AA R  RYA   E         ++ AH  DDQLET+ 
Sbjct: 60  AEARRVGIRMTRLE-WEGQAPSQAACRTRRYAFFQEVMAETGRRHLVLAHHRDDQLETLL 118

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           ++  R       G+ G+     +     I RP L   ++ +  +   R + W ED +N  
Sbjct: 119 IQLIRGE----AGVDGIPRIRSFATG-QIHRPLLPYSKQQLYDYAKARQVVWHEDETNAG 173

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            ++ R ++R  +  + L  L    ++       V         KY+T +++  +      
Sbjct: 174 TKYLRNQMRHRLLPL-LAELRPGYEEATVQAAMVRYEQKQEHLKYVTSYVKEQMTDRGLP 232

Query: 257 LN----IDSTLLFYLLRVSA 272
           L     + +     +LR   
Sbjct: 233 LEAIQKLPTDFRRLVLRALL 252


>gi|257058096|ref|YP_003135984.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8802]
 gi|256588262|gb|ACU99148.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8802]
          Length = 326

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 122/314 (38%), Gaps = 23/314 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYV 73
           L     IL+A+SGG DS+ L   L  + S   +   K +    DH     + DE    +V
Sbjct: 19  LPKGQRILIAISGGQDSVCLGKLLLDLQSKWGW---KIAIGHCDHRW---SYDEGIADHV 72

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +     I   +    N K      AAAR+ RY  + E A+  + T ++T HT  D+ E
Sbjct: 73  EKLAQNWGIPFYLKVANNLKET---EAAARDWRYQSLIEIAQENDFTEVVTGHTQSDRAE 129

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+     R     G  LS +        N+ + RP L   R +  +F  Q ++   ED +
Sbjct: 130 TLLYNLIRGAGTDG--LSSLTWQRNLTPNITLVRPLLNISRPETLAFCQQFDLPIWEDAA 187

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N + ++ R R+R+ +          +++       +V  A    +     + +   I   
Sbjct: 188 NENLKYSRNRIRQQLIPYLQTQFNPQVETNLAQTAEVLRAEVEYLETSAKMVLEQAINED 247

Query: 254 QDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--G 305
           Q  LN      +   L   ++R        +   P +  +E +   + + +R   S   G
Sbjct: 248 QTQLNRLILQSVPLALQRRVMRKFLQKISQRE--PNFEQIEALTQLIDAPRRSRTSSLPG 305

Query: 306 RVVIDRRANFLWIT 319
               + + +++ ++
Sbjct: 306 NFSAEVQGDWIILS 319


>gi|307297688|ref|ZP_07577494.1| tRNA(Ile)-lysidine synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916948|gb|EFN47330.1| tRNA(Ile)-lysidine synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 463

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/332 (24%), Positives = 137/332 (41%), Gaps = 28/332 (8%)

Query: 6   IESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +E +RF     +      ILVAVSGG DSM LL  L+++ S     KI+  A +++H LR
Sbjct: 6   LEVLRFVKEWDLVREGQRILVAVSGGKDSMALLNVLNNLKSTL---KIELFAANLNHGLR 62

Query: 64  ETA-KDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           E   ++E R +   C    I        V  +  +K    + +AARE RY  + +    I
Sbjct: 63  EEGPQEEARMIEQFCEDRFIDFFHEKRDVREYMRTKKGESIESAAREVRYGFLRDVKSMI 122

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I   H  DD +E   +R  +    KG+         L   N  + RP L    + I
Sbjct: 123 GADRIALGHNRDDLVENTLLRLVKGTGMKGV-------IGLRPSNGDLIRPLLFSDMQRI 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
             ++    +++ ED +N +D FER  +R       R +      A++   +   D    +
Sbjct: 176 IDYVTINKVTFMEDETNAEDGFERNFLRLRVIPELRKINPALNKAIWRFFENIYDGYSLI 235

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMER 289
           ++ V  L+ ++          +S ++  I+  L+  L+R   ++       P   R++  
Sbjct: 236 DSRVETLMSRFGKADGIYFAKLS-ELREIEKPLILELVRKIVSMMSFDNYPPSRQRALAF 294

Query: 290 VMLFLKSGKRGCVSIGRVVID-RRANFLWITR 320
             LF K   R  V     +   R   +++  R
Sbjct: 295 FDLFSKDEGRWTVEFKENLKASRIGKYVFFYR 326


>gi|228473589|ref|ZP_04058341.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624]
 gi|228274961|gb|EEK13771.1| tRNA(Ile)-lysidine synthase [Capnocytophaga gingivalis ATCC 33624]
          Length = 414

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/299 (21%), Positives = 108/299 (36%), Gaps = 30/299 (10%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIA 83
           A+SGG DS+ L   LH +        I F     +  LR E ++ +  +V  +   L + 
Sbjct: 2   AISGGVDSVVLAHLLHEL-------GISFLMAHCNFQLRGEESEGDQHFVETLAKELSVP 54

Query: 84  HSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++  ++              AAR  RY       +      I+TAH  +D  ET  + +
Sbjct: 55  IAIKRFETKTYGKAHGLNTQLAARVLRYEWFEALRQEQGYDYILTAHQANDSWETFLINT 114

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    KG+         +   N  + RP L   RE+I +F  +R I W ED SN  D +
Sbjct: 115 SRGSGLKGL-------LGIPAENAHVLRPLLPFSREEILAFAQERGICWREDSSNGSDAY 167

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-----IAISQ 254
            R ++R  +  I         K F+  +  +  +   L                 I    
Sbjct: 168 TRNKIRHHLSPILKEIHPNFFKNFEKTQNLLQLSYDFLQESVAQYRKEWFIMGQPIVFEV 227

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           + L       F L  + +    G   +     +ER  L   +G++      R++ +R  
Sbjct: 228 EKLRDHPHRRFLLYELLSPYGFGDTEI-----LER-FLRASTGRQLSSDTHRLLSNRGQ 280


>gi|9294051|dbj|BAB02008.1| unnamed protein product [Arabidopsis thaliana]
          Length = 614

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 125/302 (41%), Gaps = 28/302 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSD------RSFGKIK-FSAISVDHCLRETAKDEVRYVSD 75
            + VSGG DSM L +      ++      ++ G I    AI VDH LR+ +KDE   V  
Sbjct: 58  ALGVSGGPDSMALCVLTAKWKTEGLSCVNKTDGFIDGLVAIVVDHGLRQESKDEAELVCS 117

Query: 76  VCSRLRIAHSVVS--WKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             S++ I   + S  W + +P+ G L  AARE RY +IS         +++ AH  DDQ 
Sbjct: 118 RVSQMGIRCEIASCDWVDGRPKLGHLQEAAREMRYEMISNVCFRQQIEVLLIAHHADDQA 177

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIRSFL 181
           E   +R  R     G+  +     I           + + ++ + RP L   +ED+    
Sbjct: 178 ELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYKIC 237

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVAML 237
                 W EDP+N    F R R+R  + +++       L   + + +  R  V+     L
Sbjct: 238 QWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCTDL 297

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSMERVMLFL 294
           I + +TV  +    +  + LN        L +   A+      +       + + ++ ++
Sbjct: 298 IHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLNYI 357

Query: 295 KS 296
           ++
Sbjct: 358 RA 359


>gi|298488349|ref|ZP_07006381.1| tRNA(Ile)-lysidine synthetase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157171|gb|EFH98259.1| tRNA(Ile)-lysidine synthetase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 445

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/309 (21%), Positives = 101/309 (32%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +  SGG DS  LL  L  +    S       AI V H L+  A     +   VC  L +A
Sbjct: 30  IGFSGGLDSTVLLHLLAKLAKCESLPV--LHAIHVHHGLQAAANAWPEHCRRVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V      P   +  AAR+ARY   ++        +++T    DDQ ET+  R  R  
Sbjct: 88  FELVRVHV-DPGASIEQAARQARYTAFTDRLAE--GDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M    +      + RP L   R ++  +  Q  + W EDPSN D RF R  
Sbjct: 145 GVRG--LAAMPGQRILGRG-HLVRPLLAVSRVELEGYAHQHGLHWVEDPSNDDSRFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--- 260
           +R  V  +                  +  A  +L    +     +        L +    
Sbjct: 202 LRSDVLPLLTSRWPQASISLARTACHLGEAQQLLDELAVQDLAGAQATTPFAWLGLPVLS 261

Query: 261 --------STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                   +      LR   A          +   E +        R    +    + R 
Sbjct: 262 IGPLAVLSAARQRNALRHWLAPLTRLPDTDHWAGWEALRD-AAQDARPLWRLADGELHRA 320

Query: 313 ANFLWITRA 321
              +W   A
Sbjct: 321 QGCIWWVPA 329


>gi|312869847|ref|ZP_07729988.1| tRNA(Ile)-lysidine synthetase [Lactobacillus oris PB013-T2-3]
 gi|311094626|gb|EFQ52929.1| tRNA(Ile)-lysidine synthetase [Lactobacillus oris PB013-T2-3]
          Length = 457

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 164/404 (40%), Gaps = 28/404 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            F   ++  RFF ++      +++AVS G DSM LL  + S+ +         +   V+H
Sbjct: 8   QFKRHLQRGRFFDKN----DRVVIAVSTGVDSMALLSLVTSLPASLRPA---ITVAHVNH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINA 119
            LR  +++E  Y+   C + ++A  V  W + + PQTG+ AAAR  RY   +E      +
Sbjct: 61  ELRRQSQEEEAYLRRYCQKHQLALLVKHWPRANHPQTGIEAAARRFRYQFFAEVMAARES 120

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            +++TAH  +D  ET+ M+  R        L G+     +     + RP L   +E +R+
Sbjct: 121 PILLTAHHQNDLAETMLMKLVRGGQL--SQLVGIEAVRSFA-GGRLVRPLLPFSKEQLRA 177

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           + + + + W ED +N D    R R R  +           ++       ++   +A    
Sbjct: 178 YAVAKGVRWYEDATNQDLTISRNRYRYQLLPALEKENPRLLQHLTSYHQQLAALLAWQNQ 237

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLFLKSG 297
           +      R  +A    +       L  + +        +  LP  +   ++ +M  LK+ 
Sbjct: 238 EVQAQLAR--VAEGNQLHLTSWEELPEVAQRLVLQHWLEQRLPAIKQQLVDELMAGLKNH 295

Query: 298 KRGCVSIG-----RVVIDRRANFLWIT-----RAVRNLPTLILYPEETTVWDGRYQFQNL 347
                S       ++V D ++  L  T     +    L T++   +   V D R   + +
Sbjct: 296 VAPQQSWALPNGYQLVKDYQSCRLVPTQKNHGKGQNGLSTVVELGQWYRVSDQRA-IRVI 354

Query: 348 SDSLIQIGPQSYRKADVPSGIPPIIAQ--RALSSMPSKEGGKPL 389
           +     +G  S ++  +     P+  +  RA  ++  K+GG  L
Sbjct: 355 AAKDDTVGQSSGQEMWLAPDQLPLRLRLWRAGDALRLKQGGHQL 398


>gi|120602664|ref|YP_967064.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris DP4]
 gi|120562893|gb|ABM28637.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris DP4]
          Length = 390

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/325 (24%), Positives = 125/325 (38%), Gaps = 36/325 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H +VA+SGG+DS  LL+ LH +   R    +  SA+ VDH LR  +  E R     C  L
Sbjct: 64  HCVVALSGGADSTALLLILHYL---RQRLGLSLSALHVDHGLRPESAAEARAAVTFCHAL 120

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I  +V +    +     + G   A R+ARY L++    +  A  I T H   D  E V 
Sbjct: 121 GIPLAVHTLAVDELAAVWRVGTEEAGRKARYDLLAAALPSAAADWICTGHHLGDLAEDVL 180

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R      +G   +CD         I RP L   ++ + +FL    +SW EDPSN  
Sbjct: 181 MRLVRGCGWPALGGMRLCDPARR-----ILRPLLLTGKDRLEAFLATLGVSWTEDPSNAS 235

Query: 197 DRFERVRVRRFVRDI-------------DLHALYLKMKKFQDLRVKV---------NNAV 234
           D + R R+R  V  +             DL  L      F + R            ++A 
Sbjct: 236 DTYLRNRMRHGVIPLLTAENPGFLDQVRDLWQLAHIDADFWETRTAATLNAAPAPPSHAE 295

Query: 235 AMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVML 292
                 +   H    I + +  L  +       L +      G GQ       +++   +
Sbjct: 296 GEASAPHDGAHGAESIRLPKTTLTGLHQAERLRLFKEVLRRMGEGQARAETLLALDAAWV 355

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLW 317
             + G R   +  +    RR + ++
Sbjct: 356 AGRGGTRFMFAGCKTATVRRGDIIF 380


>gi|123430775|ref|XP_001307953.1| PP-loop family protein [Trichomonas vaginalis G3]
 gi|121889608|gb|EAX95023.1| PP-loop family protein [Trichomonas vaginalis G3]
          Length = 444

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 118/305 (38%), Gaps = 21/305 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           + VSGG+DSM L      +  D +   +      ++H +RETAK +  +V   C    I 
Sbjct: 23  LGVSGGADSMYLFYNFMDLKEDWN---LDIIVCHLNHGIRETAKRDEEFVKKSCQAYGIK 79

Query: 84  HSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
               +        + +     A R  RY       +      I+TAH  +D++ETV    
Sbjct: 80  FISKTVNMDEFAREKKFSSEEAGRILRYEFFR---ENSQGRKILTAHNANDRVETVLFNI 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    KG  LSG+       +N  I RP +  +RE+I  +L +  + + +D +N ++ +
Sbjct: 137 MRGTGLKG--LSGIT-----HVNGDIYRPLINIKREEIEDYLHKNKLQYFDDETNFEEIY 189

Query: 200 ERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            R ++R  +          +   + +  D   + N  +  ++ +     +     I  +I
Sbjct: 190 TRNKIRLGLIPELKKFNPYIINSLLRLSDNVEEANEFIGEILEENYNNCLGDNFLIPSEI 249

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDRRANF 315
           + +   +   +++          ++    ++  +           + +G+ +   R  + 
Sbjct: 250 IKLKKLIAQEVIKKYLEENFYSENILNRFNILAIYDLCLGDSGRRIDLGKNISARRSYDK 309

Query: 316 LWITR 320
           ++I  
Sbjct: 310 IYIEE 314


>gi|119493467|ref|ZP_01624136.1| hypothetical protein L8106_08621 [Lyngbya sp. PCC 8106]
 gi|119452711|gb|EAW33890.1| hypothetical protein L8106_08621 [Lyngbya sp. PCC 8106]
          Length = 338

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 116/323 (35%), Gaps = 27/323 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +LVAVSGG DSM L+  L  +     +     +    DH  R  +     Y+  
Sbjct: 24  LPSKQRLLVAVSGGQDSMSLIKLLLDLQPKWGW---DLAIAHCDHRWRSDSGANADYIEQ 80

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +    +++      + ++      A AR  RY ++SE A T N   ++T HT  D+ ET+
Sbjct: 81  LADSWQLSFY---RQTAQKIPKTEADARHWRYQVLSEIALTHNYDYVVTGHTKSDRAETL 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTI-------LYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
                R     G+        I         + N+ + RP L   R     F   + +  
Sbjct: 138 LYNLIRGSGSDGLQALAWKRPIDIEANVNHTNHNIGLVRPMLEILRSQTGQFCQDQQLKI 197

Query: 189 CEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            ED +N D  + R R+R  +             HAL    +  Q     +      L  +
Sbjct: 198 WEDSTNEDLSYARNRIRTELIPYLQTHFNPQTEHALAQTAELLQAEVDYLEQTTEQLYQQ 257

Query: 241 YLTVHMRSI-IAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
            ++    S  + I++ IL      L   ++R          + P +  +E++   + +  
Sbjct: 258 AISTEPDSTGLKINRLILRQAPLALQRRVMRRWLQQI--LPTSPSFEQIEKLTALICAPN 315

Query: 299 RGCV--SIGRVVIDRRANFLWIT 319
           R       G  +      ++ I+
Sbjct: 316 RSQTDPFPGGAIAKVDQQWIKIS 338


>gi|322375226|ref|ZP_08049740.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C300]
 gi|321280726|gb|EFX57765.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. C300]
          Length = 425

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 107/262 (40%), Gaps = 22/262 (8%)

Query: 9   VRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +  F+R       + +++A+SGG DSM L   L +   +     I+     V+H  R  +
Sbjct: 7   LNHFLRKEYFKKHSKVVLALSGGLDSMFLFQLLSTYQKELG---IELIVAHVNHKQRSES 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             E   +  +     +   + S+          A ARE RY    +  K + AT ++TAH
Sbjct: 64  DWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKEVGATALVTAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ MR  R    +   L+G+ ++ + D ++ I RP L   ++D         I
Sbjct: 120 HADDQVETILMRLIRGSRLR--HLTGIKESQVVD-DIEIIRPLLPFHKKDFPP------I 170

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
              ED +N ++ + R R+R       L  L  +  + +   + +   ++        +  
Sbjct: 171 FHFEDQTNQENTYFRNRIRNR----YLPELEKENPRLKSALLDLGREISDYQATITELSK 226

Query: 247 RSIIAISQDILNIDSTLLFYLL 268
           +  +    ++ +        LL
Sbjct: 227 QIDVEDLNELFSYSQQTQGVLL 248


>gi|296117358|ref|ZP_06835948.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976124|gb|EFG82912.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter hansenii ATCC
           23769]
          Length = 440

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 127/382 (33%), Gaps = 33/382 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + +AVSGG+DS+ L +                  + VDH LR  + DE        + +
Sbjct: 40  PVAIAVSGGADSLALALLTRRWRRA-------VVGLVVDHGLRAESADEAARTVRCLAEM 92

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   ++  +       +   AR  RY  +    + +    ++  H  DDQ ETV MR +
Sbjct: 93  DIPARLLRLRGLLRGPRMAERARRLRYQALCHACRELGCLDLLLGHHGDDQAETVMMRQR 152

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                 G+         +   ++   RP L   + D+ + L    I W EDPSNTD R E
Sbjct: 153 ASSGPDGLAAMAQA---VAGTDVRFVRPLLGVCKADLYATLRHAGIDWVEDPSNTDLRTE 209

Query: 201 RVRVRRFVRDIDL--HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           R R R  +              ++    R+  +   A  +  +        + + +  + 
Sbjct: 210 RARARHALSTDAQLRRVCLQTAQQAGGRRMARDAQDAQWLAAHARFDAGGWVGLPR--ML 267

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
               +L  L+R       G    P    +  +    ++      ++G   +        +
Sbjct: 268 PPERVLSALVR----TVSGHEYPPSPGGVAALCAVPRAA-----TLGGACLLAHGGEWLL 318

Query: 319 TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ--------IGPQSYRKADVPSGI-P 369
            R    +    +       WDGR+       +           +G         P     
Sbjct: 319 AREEAAM-QGHVRARAGICWDGRFVLHVDGVADGAVPALSDLYVGAAGAVATWWPRERGR 377

Query: 370 PIIAQRALSSMPSKEGGKPLLA 391
           P    R L ++P+   G  ++A
Sbjct: 378 PPFPARVLRTLPALHRGGRVVA 399


>gi|218134795|ref|ZP_03463599.1| hypothetical protein BACPEC_02698 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990180|gb|EEC56191.1| hypothetical protein BACPEC_02698 [Bacteroides pectinophilus ATCC
           43243]
          Length = 522

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 127/362 (35%), Gaps = 43/362 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           ++V +SGG+DS+ LL+ L S+    +F   +  A+ V+H +R E A  +  +   +C RL
Sbjct: 27  VVVGLSGGADSVSLLMVLGSLKERMAF---ELRALHVNHGIRGEEAMHDELFTKALCDRL 83

Query: 81  RIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATL--------------- 121
            I    V         +       A R AR    +     I                   
Sbjct: 84  GIRLKTVHIDVPALVQETHMSSEEAGRHARQDEFARLCAEIEKEKTVDRESGQIPGQTGR 143

Query: 122 ---IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-----LYDLNLWISRPFLRCR 173
              +  AH  DDQ ETV     R  A KG+      + +            I RP L  R
Sbjct: 144 RVVVALAHHMDDQAETVLHNLVRGSALKGLAGMSPVNVMYGTCDGVRTGYTIIRPLLCVR 203

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQD 225
           R  I  +L   N  +C D +N  + + R R+R  +  +         +  +       ++
Sbjct: 204 RAAIEEWLRGHNQEYCTDSTNLGNDYTRNRLRNTIIPMLNDMVNANAVSNIASAAAFAKE 263

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
            +  +N        +   V  R  +  +  +   D  +  Y++ ++ A            
Sbjct: 264 AQDYINRQAEAAFAQCADVRERETVIDAVRLSQYDRIIRKYVVHMAIASEAKAAKDICAV 323

Query: 286 SMERVMLFLKSGKRGCVSI-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQF 344
            +E V   +++G    V I   +   RR + + I +A                 DGR+  
Sbjct: 324 HVESVEALIEAGTGSSVDIPYGLKARRRYSEIVIQKAD---MKCDGQNGGVDEHDGRWYS 380

Query: 345 QN 346
           +N
Sbjct: 381 KN 382


>gi|312865835|ref|ZP_07726057.1| tRNA(Ile)-lysidine synthetase [Streptococcus downei F0415]
 gi|311098710|gb|EFQ56932.1| tRNA(Ile)-lysidine synthetase [Streptococcus downei F0415]
          Length = 420

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 112/298 (37%), Gaps = 26/298 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  I+   +F +       +LVAVS G DSM LL+ L +   D +   I+     V+H  
Sbjct: 5   LEDIQKKAYFAKH----DKVLVAVSAGVDSMNLLLFLQAHQEDLA---IEIGLAHVNHKQ 57

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R+ +  E  Y+ D      +   +  +  +  +      AR+ RY    +  +    T +
Sbjct: 58  RQQSDLEETYLRDWAEDHGLPFYLAHFTGNFSEKS----ARDFRYNFFKKVMEKEGYTTL 113

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAH  DDQ ET++MR  R    +   L+G+     +     I RPFL  R+E++     
Sbjct: 114 VTAHHADDQTETIFMRILRGSRLR--HLAGIKAVQEFGPG-QIIRPFLNIRKEELPE--- 167

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
              +   ED SN  D + R R+R       L  L  +  K      ++   V  L     
Sbjct: 168 ---VFHFEDASNQSDAYLRNRIRHH----YLPELAKENPKISTAIRELGTEVQTLFAALA 220

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
            +         Q        +  YLL     +             + ++  ++  K G
Sbjct: 221 DLTANLDGTDLQVFHKQSPAVQVYLL--QDYLEAYPDLSLSRAQFDSLLESIRKAKSG 276


>gi|148259382|ref|YP_001233509.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5]
 gi|146401063|gb|ABQ29590.1| tRNA(Ile)-lysidine synthetase [Acidiphilium cryptum JF-5]
          Length = 390

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 102/379 (26%), Positives = 151/379 (39%), Gaps = 38/379 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + V VSGG+DSM L +   S   +R    +   A   DH LR  + DE        + L
Sbjct: 13  RVAVGVSGGADSMALTLLAASWARERGGDCLGLIA---DHGLRPESADEASLTGRRLAAL 69

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I + ++  +   P   L A AR+AR+A ++  A+      ++  H   DQ E   MR+ 
Sbjct: 70  GIGYRILRLQLG-PGPALQARARDARHASLAAAARGAGIVHLLLGHHAGDQDELRAMRAA 128

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GL+GM      D ++ I RP L      +R FL  R I W EDPSN D RFE
Sbjct: 129 RGP----RGLAGMAGFAARD-DIVILRPLLGTDPAVLREFLSGRGIGWVEDPSNADARFE 183

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           RVRVR   R   L    L      D R      VA  + + +++       +    L ++
Sbjct: 184 RVRVRATRRQAALVPPSLD----ADRRAAAERDVAETLARNVSLRPEGWAIVRAASLPVE 239

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI---DRRANFLW 317
           +      L V   + GG    P   ++ER+   L+       ++G V I    R      
Sbjct: 240 A------LAVLFRVLGGAAYPPARAALERLTPALRPA-----TLGGVRIMAAGRHGPGWL 288

Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQ----------FQNLSDSLIQIGPQSYRKADVPSG 367
           + R         +      VWDGR++             L DS  +IG +S     +   
Sbjct: 289 LVREAAAC-APPVAAVRGAVWDGRFRVCDVPPGARTIGALGDSAAEIGRRSGLPGALRRT 347

Query: 368 IPPIIAQRALSSMPSKEGG 386
           +P       + S+P   GG
Sbjct: 348 LPAFFGGDGVLSVPHLAGG 366


>gi|325479551|gb|EGC82647.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 454

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 116/310 (37%), Gaps = 23/310 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS  L+ AL+ + ++  F          +H  R+ A ++   V +   +L 
Sbjct: 23  IIVGASGGPDSQFLVYALNELKNELKF---DIILAHFNHLHRKEAIEDEMLVKETAEKLS 79

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +     S          +     A R  RY       K  N   I  AHT DDQ ETV M
Sbjct: 80  LRFITKSQSMDQFAKDMKISPEDAGRRLRYEFFRSIEKDKN-PKIAVAHTMDDQAETVLM 138

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R     G+         +   N  I RP L  +++D+  +L    I++  D +N + 
Sbjct: 139 RIIRGTGVNGL-------VAMTYKNDDIIRPILDIKKQDLLDYLATNGINYHIDKTNNET 191

Query: 198 RFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
            + R ++R         +      +L        D    ++  +  L    L       +
Sbjct: 192 DYTRNKIRLDIIPQIEKINPNFKKSLVNLSHIAADETGIIDRYIEDLYADVLLESGEDFV 251

Query: 251 AISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
           +I+Q   + +D++L   LLR +     G++      ++E  +  +       +  G + +
Sbjct: 252 SINQKSFDKLDNSLRRKLLRRAILDIKGEVKDISKENIETFLEIINLDNGKTIIKGDLTL 311

Query: 310 DRRANFLWIT 319
            +  N   + 
Sbjct: 312 TKSYNQYRLY 321


>gi|291279418|ref|YP_003496253.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1]
 gi|290754120|dbj|BAI80497.1| cell cycle protein MesJ [Deferribacter desulfuricans SSM1]
          Length = 419

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 105/269 (39%), Gaps = 19/269 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVD 59
           M  +  E + F   +      ++VA SGG DS   L  LH ++ ++    I    A  ++
Sbjct: 1   MMNTLYEKILFKECNAYKNKKLIVAFSGGKDS---LSILHFLVKNKDLLSISDIIACHIN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAK 115
           H +R  + D+ ++  + C +L +              K +  +  AAR  RY  + +   
Sbjct: 58  HQIRPDSDDDEKFAKEFCDKLNVKIYTYKIDVFDYVKKYKVSIEEAARILRYKKLYDLLN 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            I    I+TAH  DD +E  ++R  R      +    + D +       I RP L   RE
Sbjct: 118 DIKYDFIVTAHHKDDLIENFFIRVFRGTPIYNLSGFNINDDV-------IKRPLLNINRE 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            I  ++    + +  D SN D+++ R  VR  +    +  +    K F +  +++ +   
Sbjct: 171 CIEEYIDYYQLPFVVDKSNFDEKYLRNWVRNKI----VKEIKSYNKGFLNNIIRLIDESK 226

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            L           +  + +D +      L
Sbjct: 227 ELSDYLKRKCFVEVNELKEDFIYFSKDRL 255


>gi|28199394|ref|NP_779708.1| cell cycle protein [Xylella fastidiosa Temecula1]
 gi|61217346|sp|Q87BE2|TILS_XYLFT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28057500|gb|AAO29357.1| cell cycle protein [Xylella fastidiosa Temecula1]
          Length = 437

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 132/386 (34%), Gaps = 22/386 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F R       +LVA SGG DS  LL  L S  + R  G     AI + H L E A     
Sbjct: 7   FPRIPDPGVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTA 63

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           + +  C++  I   +     S      + AA          H        +  AH  DDQ
Sbjct: 64  HCAAFCTQHDIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 122

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET  +R+ R   +   GL+ M     +     + RP L   R  +  +  Q+++ W ED
Sbjct: 123 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHSRAQLLDYAQQQHLDWIED 178

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250
            SN D R +R  +R  V  + LH  + +          +  A A L+     V +  ++ 
Sbjct: 179 SSNADLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 237

Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305
              A+  + L          L  +     G   LP      +ER +L  +     C +  
Sbjct: 238 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 297

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              I R    L++ R           P+   +W G           + +    +      
Sbjct: 298 HTEIRRWRLRLYLHRPQ-----PPWPPDWQPLWSGTAPLILPDGGQLHLESTDHETVPGF 352

Query: 366 SGIPPIIAQRA--LSSMPSKEGGKPL 389
                + A+R      +P +    PL
Sbjct: 353 PHPLRVRARRGGERLILPGRTHSHPL 378


>gi|160285497|pdb|2E89|B Chain B, Crystal Structure Of Aquifex Aeolicus Tils In A Complex
           With Atp, Magnesium Ion, And L-Lysine
          Length = 315

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 122/313 (38%), Gaps = 34/313 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+A SGG DS+ L   L  + +  S  ++       +H LRE+A+ +  +  +    
Sbjct: 25  RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVAL--AHFNHMLRESAERDEEFCKEFAKE 82

Query: 80  LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             +   V    V     + +  L  A R  RY  + E  ++     I TAH  +D LET 
Sbjct: 83  RNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLETS 142

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G GL G+   +  +    I RP    +R +I  +   + + W ED +N 
Sbjct: 143 LLFFTR-----GTGLDGLIGFLPKEE--VIRRPLYYVKRSEIEEYAKFKGLRWVEDETNY 195

Query: 196 DDRFERVRVRRFVRD------IDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           +    R R+R  V         +L   +LKM K  +  R  +      L  +    +   
Sbjct: 196 EVSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAEREFLEEEAQKLYKEVKKGNCLD 255

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RV 307
           +  + +  L     L   ++R              Y  +E V   L+ G  G V++G   
Sbjct: 256 VKKLKEKPL----ALQRRVIRKFIGEK-------DYEKVELVRSLLEKG--GEVNLGKGK 302

Query: 308 VIDRRANFLWITR 320
           V+ R+  +L  ++
Sbjct: 303 VLKRKERWLCFSK 315


>gi|304405794|ref|ZP_07387452.1| tRNA(Ile)-lysidine synthetase [Paenibacillus curdlanolyticus YK9]
 gi|304345037|gb|EFM10873.1| tRNA(Ile)-lysidine synthetase [Paenibacillus curdlanolyticus YK9]
          Length = 480

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/274 (23%), Positives = 99/274 (36%), Gaps = 14/274 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETA 66
           + R   +       I++AVSGG DSM LL  +H + +     ++K  A  VDH  R   +
Sbjct: 10  AARDSDQLWQQGDTIVIAVSGGPDSMMLLHLMHRIATA---DRLKLVAAHVDHGFRGAES 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLI 122
             E   V     +L IA   V         +       A+R  RY  + + A    A  I
Sbjct: 67  TAEGEQVRAFAEQLGIAFEAVKLDMPTYIEETGMNGQLASRLRRYEFLHQVASRHGANRI 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AH  DDQ ETV MR  R                  D N+ + RP LR  + DI  ++ 
Sbjct: 127 ALAHHADDQAETVLMRMLRGAGAG---GLAGIQPKRLDKNVELIRPLLRMYKTDIFRYIS 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIP 239
           Q  I +  D SN    + R  +R  V          L + + +  +L    +  +     
Sbjct: 184 QYEIPYAMDSSNEKRDYFRNEIRLDVMPYLAKYNPQLPVSLNRLAELASAEDQWMNDEAS 243

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273
           +     +     +  ++   D   L   L+    
Sbjct: 244 RVFKQLVTCSKGMDCELHRADFAGLPVALQRRLI 277


>gi|312864100|ref|ZP_07724335.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis F0396]
 gi|311100332|gb|EFQ58540.1| tRNA(Ile)-lysidine synthetase [Streptococcus vestibularis F0396]
          Length = 280

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/251 (26%), Positives = 106/251 (42%), Gaps = 21/251 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ILVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+    
Sbjct: 17  QHKKILVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEYEEDYLRHWA 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              +I        ++        AAR  RY    +  K  + + ++TAH  DDQ ET++M
Sbjct: 74  KEHKIPFH----YSAFSGKFSENAARTFRYDFFKQIMKEADYSALVTAHHADDQAETIFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   LSG+CD   +     I RPFL   +  +            ED SN+  
Sbjct: 130 RLLRGSRLR--HLSGICDVRSFGTG-QIIRPFLHIPKAQLPIT------FHFEDKSNSSL 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R       +  L  +  KF++    + + +A L+ K L    + I      + 
Sbjct: 181 AYLRNRIRLT----YIPTLSQENPKFKEHLCLLADEIA-LMEKALEELTKDITITDLSVF 235

Query: 258 NIDSTLLFYLL 268
              +  + YLL
Sbjct: 236 QQQTDAVQYLL 246


>gi|332879339|ref|ZP_08447036.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682759|gb|EGJ55659.1| tRNA(Ile)-lysidine synthetase [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 447

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 111/320 (34%), Gaps = 38/320 (11%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVR 71
             LV P   ILVA+SGG+DS+        +L           A   +  LR   +  + +
Sbjct: 18  HQLVEPDDKILVALSGGADSVA-------LLLVLLQAGFHCEAAHCNFHLRGKESDRDEK 70

Query: 72  YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +V D+C    I      +       +    +  AARE RY    E         I  AH 
Sbjct: 71  FVRDLCRSRSIRLHTKDFDTMAYAREKGISIEMAARELRYGYFEELRTDWRFDKIAVAHH 130

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET+ +   R    KG+       T +   N ++ RP L   RE+I  +L     S
Sbjct: 131 RDDNVETLLLHLVRGTGLKGL-------TGMRYRNGYVIRPMLDTSREEIERYLAGEGQS 183

Query: 188 WCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +  D +N +    R ++R       + V    L  L   ++  +D     N A+  L  +
Sbjct: 184 YVTDSTNLETEAVRNKIRLEFLPILKTVNPSILDTLQDTIRHLEDAYTLYNIAIEDLKAR 243

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
               +   I  +    +    T+LF LL                   E V   L  G   
Sbjct: 244 ICRNNRIDIQTLK--TIPAARTVLFELL---------SSYGFNSVQTEEVFDHLDGGSGK 292

Query: 301 CVSIGRVVIDRRANFLWITR 320
                   + R    L ++R
Sbjct: 293 VYESHEWRLLRDRKTLVLSR 312


>gi|15806226|ref|NP_294931.1| cell cycle protein MesJ /cytosine deaminase-like protein
           [Deinococcus radiodurans R1]
 gi|84039866|gb|AAF10777.2|AE001969_6 cell cycle protein MesJ, putative/cytosine deaminase-related
           protein [Deinococcus radiodurans R1]
          Length = 600

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 116/291 (39%), Gaps = 31/291 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +LV VSGG+DS+GLL AL +V +  +          +DH LR  + D+  +VSD+C+
Sbjct: 55  GRQVLVGVSGGADSVGLLRALLAVGALPA-------VAHLDHALRPESVDDAAWVSDLCA 107

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           RL +   V         ++    L  AAR  RY ++S  AK   A +I+TAHT  DQ ET
Sbjct: 108 RLGVPCEVTRIDVGAVAARRNWNLEBAARRLRYDVLSRAAKHSGAEVILTAHTRRDQAET 167

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V M   R                +      + RP+L   R +I ++L      W ED SN
Sbjct: 168 VLMELLRGEGRI---------RGIPPQRGRVRRPWLNVGRAEIETYLRGLGQDWREDASN 218

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            D RF R  +RR V  + L        +F      +     +       +   +      
Sbjct: 219 ADPRFTRAWLRREVMPVLLT-------RFPAAETALAQVAELGAEDDAALQALAARLTPH 271

Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
             L      +L   L  +    GG         +  +   L +G+   +++
Sbjct: 272 TPLDRQPPAVLRRWLA-AELRSGGLDFTA--EQLRDLAGALNAGQTRHLTL 319


>gi|295101533|emb|CBK99078.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 488

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 117/348 (33%), Gaps = 46/348 (13%)

Query: 4   SPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +++VR F    + L    H+ +AVSGG+DSM LL  +  +  ++    I  +   V+H
Sbjct: 5   EILQTVRGFCAREKLLDGKQHLALAVSGGADSMALLCLIRPLAGEKG---IALTVCHVNH 61

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114
            LR   A  +  +V +VC+RL +   V     +  +  KP+ G    AR  RYA      
Sbjct: 62  GLRGETADRDEAFVREVCARLGLPLRVFHAAELEAEAGKPRAG-EDWARRLRYACFERVL 120

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  + TAHT  DQ ET+  R  R     G GL G              RP L   R
Sbjct: 121 AE-GIDAVATAHTGSDQAETLLFRLAR-----GTGLHGAAGIRPSRPGY--LRPLLCLTR 172

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRR-------FVRDIDLHALYLKMKKFQDLR 227
            D  +        W  D +N  D + R R+R         V     H L    +K     
Sbjct: 173 ADTEAVCRACGEGWVTDETNDADDYARNRLRHGALPALCGVNSAAEHNLARFCEKAAKAD 232

Query: 228 VKVNNAVAMLIPKYLTVHMRSI-------------IAISQDILNIDSTLLFYLLRVSAAI 274
                    L+         S+             + +S+ +   D  +L   L      
Sbjct: 233 EYFARQADALLASAQAADAESLPGGAGYALRSGQPVWLSEPLRQTDPLILDMALHSLV-- 290

Query: 275 CGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322
              +          R++  L     G V +   V     + +      
Sbjct: 291 ---EPVRDAEEKYIRLLAGLVEKGSGAVQLTDAVRFCARDGVLWREEA 335


>gi|328954659|ref|YP_004371992.1| tRNA(Ile)-lysidine synthetase [Coriobacterium glomerans PW2]
 gi|328454983|gb|AEB06177.1| tRNA(Ile)-lysidine synthetase [Coriobacterium glomerans PW2]
          Length = 510

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 33/312 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD-------RSFGKIKFSAISVDHCLRETAKD-EVRY 72
            +++ VSGG+DS  LL+   +   D        S  + +   + V+H LR +A D +  +
Sbjct: 29  PVVLMVSGGADSTALLLMACTSKLDIDDGCGRASIARNRLHVLHVNHHLRGSASDGDEAF 88

Query: 73  VSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTI--------NATLIM 123
           V ++C RL +   V            L AAAR+ RYA    + K +         +  I 
Sbjct: 89  VRELCRRLGVPVCVEHASLRDLGGRNLEAAARDVRYAAARRYLKELVEEAGCPRRSARIA 148

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAHT +D+ ET +M + R     G+       + +      I RP +    E+++ +L  
Sbjct: 149 TAHTANDRAETFFMNAIRGSGISGL-------SSIPRRRNLIVRPLIDRTHEELQRYLEV 201

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYLKMKKFQDLRVKVNNAVAM 236
             + W ED SN D  F R  VR  +  + +         +        D    +    A 
Sbjct: 202 AGLRWREDESNRDTSFLRNYVRHRLMPVAMERNRNLVRTVAASCDILADEDAYMQKLAAT 261

Query: 237 LIPKYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
            +          ++ ++ D L      L   ++R++      Q  L     ++RV+  + 
Sbjct: 262 ALRSCTRREGAGLLVLNADRLAATQIALARRMVRLAVKRIDPQARL-EMDHVQRVLECVA 320

Query: 296 SGKRGCVSIGRV 307
           +G+R     G +
Sbjct: 321 AGERSITLPGGI 332


>gi|254448066|ref|ZP_05061530.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HTCC5015]
 gi|198262492|gb|EDY86773.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium HTCC5015]
          Length = 432

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 133/334 (39%), Gaps = 22/334 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  + +ES+   +         +VA SGG DS  LL AL      ++  K +  AI V H
Sbjct: 1   MTHALVESLSQRLAQWPQ-GRFVVAFSGGLDSTVLLHAL-----TKTPHKARLKAIHVHH 54

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINA 119
            L++ A D + +       L +A         S+    L A AR+ARY  +S+  ++   
Sbjct: 55  GLQDVADDWLTHCEQFSRSLDVAFEACRVLVPSESGLSLEARARDARYRALSDSLQS--G 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            +++TAH  +DQ ET+ +   R    +G+        +    + W  RP L   + D++S
Sbjct: 113 DVLLTAHHAEDQAETLLLNLMRGSGVEGLSAMPELKALSPSRSTWHGRPLLNQSKADLQS 172

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +  Q  + W ED SN D++F+R  +R  V  +         +        + +     + 
Sbjct: 173 YARQFQLQWVEDHSNRDEQFDRNYLRHRVMPLLQQRWPKAAESMSASVRHLQSVRQRELD 232

Query: 240 ---KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-- 294
              +   +H R    +   +  ++  +    L +  A   G    P Y+ ++ +      
Sbjct: 233 YWQQMARLHTRERGKVLP-LSALEGMVKADRLSLIRAWLAGSEPAPRYKILQAIDALCYS 291

Query: 295 ----KSGKRGCVSIGRVV---IDRRANFLWITRA 321
               +    G V+ G+     + R    L+  RA
Sbjct: 292 ELGERQEGAGTVAWGKDQRQGVSRFQKALYWRRA 325


>gi|150005405|ref|YP_001300149.1| putative cell-cycle protein [Bacteroides vulgatus ATCC 8482]
 gi|149933829|gb|ABR40527.1| putative cell-cycle protein [Bacteroides vulgatus ATCC 8482]
          Length = 417

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 116/318 (36%), Gaps = 42/318 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
              +LVA+SGG+DS        ++L           A   +  LR E +  + R+V+++C
Sbjct: 2   HDKVLVALSGGADS-------VALLRVLLVLGYHCEAAHCNFHLRGEESDRDERFVNELC 54

Query: 78  SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             L +   V  +      S+    +  AARE RY    +  K     +I  AH  DD +E
Sbjct: 55  KGLGVTLHVTHFDTVTYASRHHVSIEMAAREMRYDWFEQLRKERGMAVIAVAHHRDDSVE 114

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +   R     G+         +   N  I RP L   R+DI  +L      +  D +
Sbjct: 115 TFLLNLIRGAGINGL-------KGISPHNGCIVRPLLEVSRQDILDYLRCLRQGYVTDST 167

Query: 194 NTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           N  D + R ++R       R +      ++    ++  D+ +  N  +     + +    
Sbjct: 168 NLQDEYMRNKIRLNILPMLRELNPSVSESIAETSRRLTDVSLIYNKEIEAGKERVMEKSG 227

Query: 247 RSII-AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGKRGCVS 303
             +I  + ++  +  + LLF +L              G+ S++   V   L +       
Sbjct: 228 HILISRLMEE--SAPAALLFEIL-----------HPLGFNSVQVGDVFRSLSAQSGKRFV 274

Query: 304 IGRVVIDRRANFLWITRA 321
                + R    L I R 
Sbjct: 275 SAGWEVLRDRTELIIRRR 292


>gi|118587144|ref|ZP_01544573.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163]
 gi|118432423|gb|EAV39160.1| cell cycle protein [Oenococcus oeni ATCC BAA-1163]
          Length = 299

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 98/253 (38%), Gaps = 9/253 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +L+A+SGG DS  L   L    S+    +       VDH LR  + +E + + D  +  
Sbjct: 23  KLLLAISGGVDSTVLADLLFKYESN---PRSHLFLAHVDHQLRADSANETKLIDDQFANR 79

Query: 81  RIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +      W   K P +G+  AAR+ RY      A  + A  I+ A   DDQ ET  ++ 
Sbjct: 80  GLCVFHEKWPLEKHPHSGIEDAARKFRYDFYKRMALKVGARKIILAQHADDQAETTLLKI 139

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    + +        +  D  + + RP L   + +I  +  + ++ W ED +N D  +
Sbjct: 140 IRGADWQTVSAMEWSRPLEKDSPIEVVRPLLNVEKSEIYDYAEKNHLKWIEDSTNKDPDY 199

Query: 200 E-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             R ++R  V    L AL                 +  +    L   ++  +  S   L 
Sbjct: 200 TSRNQIRNVV----LPALKQINPNSARNIASFAEQIREVNENQLIEMLKIWLHDSIGFLP 255

Query: 259 IDSTLLFYLLRVS 271
           I  + L    R+ 
Sbjct: 256 IKRSQLEQFERLL 268


>gi|313889103|ref|ZP_07822759.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844843|gb|EFR32248.1| tRNA(Ile)-lysidine synthetase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 444

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 55/305 (18%), Positives = 119/305 (39%), Gaps = 21/305 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           + VSGG+DSM L      +  D     +      ++H +RETAK +  +V   C    I 
Sbjct: 23  LGVSGGADSMYLFYNFMDLKDD---WDLDIIVCHLNHGIRETAKRDEEFVKKSCQAYGIK 79

Query: 84  HSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
               +    +     +     A R  RY    E++K      I+TAH  +D+ ETV    
Sbjct: 80  FISKTVNMDEFARNEKISSEEAGRILRYEFFRENSK---GRKILTAHNANDRAETVLFNI 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    KG  LSG+       +N  + RP +  +RE+I  +L +  + + +D +N ++ +
Sbjct: 137 MRGTGLKG--LSGIS-----HVNKDVYRPLINIKREEIEDYLHKNKLQYYDDETNFEEIY 189

Query: 200 ERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            R ++R  +          +   + +  +   + N+ +  ++ +     +     I  +I
Sbjct: 190 TRNKIRLGLIPQLKKFNPDIINSLLRLSENAEEANDFIGEILEENYNNCLGDNFLIPSEI 249

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDRRANF 315
             +   +   +++          ++    ++  +           + +G+ +   R  + 
Sbjct: 250 KKLKKFIGQEVIKKYLEENFYSENILSRSNILAIYDLCLGDSGRQIDLGKNISARRSYDK 309

Query: 316 LWITR 320
           ++I  
Sbjct: 310 IYIEE 314


>gi|315608203|ref|ZP_07883195.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574]
 gi|315250172|gb|EFU30169.1| tRNA(Ile)-lysidine synthase [Prevotella buccae ATCC 33574]
          Length = 467

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 31/259 (11%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M L  I+ V+ ++ S   L      +VA+SGG+DS+ LL+ L  +            A  
Sbjct: 1   MML--IDKVKGYIHSHQLLQSGETYIVALSGGADSVALLLILKEL-------GYSVEAAH 51

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISE 112
            +  LR E +K +  +   +C+   I      +   +     +  +  AAR  RY    +
Sbjct: 52  CNFNLRGEESKRDEDFCVSLCASRGIKLHRAHFDTFEYAHLHKVSIEMAARNLRYHYFDQ 111

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
               I A  I  AH  +D +ET+ +   R    +G  L+GM        N ++ RP L  
Sbjct: 112 LRLAIGAKGICVAHHLNDNVETLLLNLIRGTGIQG--LTGMAS-----RNGFVLRPLLDV 164

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQD 225
           R E+IR +L   N ++  D +N +D   R ++R  V           +  +   +    D
Sbjct: 165 RHEEIREYLHSINQAFVIDSTNLEDDVLRNKIRLNVIPMLEGLNPAVVDNIAKTIHNLVD 224

Query: 226 LRVKVNNAVAMLIPKYLTV 244
            +V +++     +   + V
Sbjct: 225 AKVVLDDVTKQFMSHGVAV 243


>gi|298292991|ref|YP_003694930.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
 gi|296929502|gb|ADH90311.1| tRNA(Ile)-lysidine synthetase [Starkeya novella DSM 506]
          Length = 342

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 124/302 (41%), Gaps = 13/302 (4%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
            +  A IL+AVSGG DS  L++        R  G  + +  +VDH LR  A+ E   V  
Sbjct: 26  FLRHARILLAVSGGPDSTALMLLAQRWREGRDAGP-ELAVATVDHGLRAEARTEAEAVGA 84

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + +RL + H+++   +  P+  L  AAR ARY  +  HA+ I A+ I TAHT DDQ ETV
Sbjct: 85  LAARLSLPHAILDLSSPLPKARLQEAARHARYEALLAHARAIGASAIATAHTLDDQAETV 144

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
             R  R     G  L+G+         + + RP L   +  +     +  I + EDPSN 
Sbjct: 145 LFRLMRGSGIGG--LAGIPSERALAE-VELLRPLLGLPKAHLIEECRRAGIGFAEDPSNR 201

Query: 196 DDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D RF R R+R  +       +D  AL     +       +         +      +  I
Sbjct: 202 DPRFARARLRALLPALAEEGLDAPALARLANRMTRAEAALEATTDTAAARL--WPAQGPI 259

Query: 251 AISQDILNIDSTL--LFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
             S+   +       L  L R   A+  G + L     +   +  L     G  ++   +
Sbjct: 260 RFSRPGFSELPAEIGLRLLGRAVEAVANGPVELGKLEVLHGWIAALGPEDHGARTLAGAL 319

Query: 309 ID 310
           + 
Sbjct: 320 VR 321


>gi|241764150|ref|ZP_04762185.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN]
 gi|241366487|gb|EER60987.1| tRNA(Ile)-lysidine synthetase [Acidovorax delafieldii 2AN]
          Length = 320

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 116/321 (36%), Gaps = 23/321 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +S    +        + V +SGG+DS  LL+A             +  AI V H L+  A
Sbjct: 3   QSFSAAMEQFAPALPLAVGLSGGADSTALLLACARKWPG------QVQAIHVHHGLQAAA 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL---- 121
            D  R+  D+C  L++  +V        P      AAR ARY       +   A      
Sbjct: 57  DDFERHCQDLCKCLQVPLTVQRVDARHAPGESPEDAARRARYKAFEAVVQAHPAPFAISS 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  A   DDQ+ET+ +   R     G+              ++  RP LR     +R +L
Sbjct: 117 IALAQHADDQVETLLLALSRGAGVAGLAAM---PARWERGGVFWHRPLLRVAGAHVRDWL 173

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
             +   W EDP+N D+RF R R+R  +    L A +   +             + L+ + 
Sbjct: 174 RAQGQGWVEDPTNQDERFTRNRIRAQLLP-ALEAAFPSFRDTFARSAAHAAQASELLQEM 232

Query: 242 LTVHMRSIIAISQ--DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--- 296
               +  +    Q   +  +       +LR    +     + P    +  ++  L +   
Sbjct: 233 AQQDLLQVGIPPQLAPLRALSRARQSNVLRHWLRVA--HATTPTAAQLGELLDQLAACTT 290

Query: 297 -GKRGCVSIGRVVIDRRANFL 316
            G R  + +GR  + R    L
Sbjct: 291 RGHRIHLKVGRGFVGRSGPQL 311


>gi|182682123|ref|YP_001830283.1| tRNA(Ile)-lysidine synthetase [Xylella fastidiosa M23]
 gi|182632233|gb|ACB93009.1| tRNA(Ile)-lysidine synthetase [Xylella fastidiosa M23]
 gi|307578388|gb|ADN62357.1| cell cycle protein [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 435

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 132/386 (34%), Gaps = 22/386 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F R       +LVA SGG DS  LL  L S  + R  G     AI + H L E A     
Sbjct: 5   FPRIPDPGVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTA 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           + +  C++  I   +     S      + AA          H        +  AH  DDQ
Sbjct: 62  HCAAFCTQHDIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 120

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET  +R+ R   +   GL+ M     +     + RP L   R  +  +  Q+++ W ED
Sbjct: 121 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHSRAQLLDYAQQQHLDWIED 176

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250
            SN D R +R  +R  V  + LH  + +          +  A A L+     V +  ++ 
Sbjct: 177 SSNADLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 235

Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305
              A+  + L          L  +     G   LP      +ER +L  +     C +  
Sbjct: 236 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 295

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              I R    L++ R           P+   +W G           + +    +      
Sbjct: 296 HTEIRRWRLRLYLHRPQ-----PPWPPDWQPLWSGTAPLILPDGGQLHLESTDHETVPGF 350

Query: 366 SGIPPIIAQRA--LSSMPSKEGGKPL 389
                + A+R      +P +    PL
Sbjct: 351 PHPLRVRARRGGERLILPGRTHSHPL 376


>gi|161833732|ref|YP_001597928.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           GWSS]
 gi|152206222|gb|ABS30532.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           GWSS]
          Length = 436

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 19/222 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  I   +F++++      I V+VS G DSM LL  L  +             I  +  
Sbjct: 7   FLKIINK-KFYLKN----KKIYVSVSSGLDSMVLLDVLIKIC------NFTICVIHCNFN 55

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR   +  +  ++ + C + +I     ++   K    +   AR+ RY             
Sbjct: 56  LRGKDSDKDELFIQEFCLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCD 115

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I   H  DD +ET ++   R     G G+ G+     +     I RP     +++I S+
Sbjct: 116 YIALGHHLDDSIETFFINLIR-----GTGIKGLIGINNFKK--KIIRPLSFFSKKEIISY 168

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
             + NI W ED SN D ++ R R+R F++ I  +  Y   KK
Sbjct: 169 AQENNIKWREDNSNYDHKYLRNRIRFFLKPILDYKFYNGFKK 210


>gi|254455258|ref|ZP_05068687.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082260|gb|EDZ59686.1| cell cycle protein mesj [Candidatus Pelagibacter sp. HTCC7211]
          Length = 299

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 140/304 (46%), Gaps = 14/304 (4%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           AVSGG DS+ L   L  + S +    +K+    VDH LR  +  E + V  +     I  
Sbjct: 2   AVSGGPDSLAL-SFLTKIYSLKKSLDVKYFL--VDHRLRINSTIEAKSVQKLLKNFYINL 58

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
           ++++WK SKP+  + + +R+ RY L+ + A       I+  H  DD  E  ++R  R   
Sbjct: 59  NILTWKGSKPEKNIQSISRDKRYKLLIKKANKFRIKNILLGHHLDDLFENFFIRILRGSG 118

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI-SWCEDPSNTDDRFERVR 203
             G+      D       + + RP L   + D+  +L +    S+  DPSN +D+F+RV+
Sbjct: 119 LNGL---VSLDRETQRDTVNLIRPLLEINKNDLV-YLSKYVFGSYVNDPSNENDKFKRVK 174

Query: 204 VRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-VHMRSIIAISQDIL 257
           VR F+       +D + L+L ++  +     + + V   + K +T +  +  + + ++  
Sbjct: 175 VRNFINQLGLEGLDKNKLFLTIRNLKLANENIKHYVEENLEKNITILSTKDKLILKKNFF 234

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
           +    ++F        I G +      + +++++  +K+     +++G  VI +  + + 
Sbjct: 235 SHSDEVVFRSFTEILKIIGKKYYPVRGKKIDKILQSIKAKSSFKLTLGGCVIKKVNDTII 294

Query: 318 ITRA 321
           +++ 
Sbjct: 295 VSKE 298


>gi|119509008|ref|ZP_01628159.1| hypothetical protein N9414_04385 [Nodularia spumigena CCY9414]
 gi|119466174|gb|EAW47060.1| hypothetical protein N9414_04385 [Nodularia spumigena CCY9414]
          Length = 333

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 104/285 (36%), Gaps = 12/285 (4%)

Query: 14  RSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L      +LVAVSGG DS+ L+  L  +     +          DH  R  ++    +
Sbjct: 17  RQLFERHQRLLVAVSGGQDSLCLIKILLDLEPKWGW---DLGIAHCDHRWRTDSEANASH 73

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V  +     ++        ++      AAAR  RYA +S  A+  N   I+T HT  D+ 
Sbjct: 74  VEKLAKIWGVSFY---LATAREPLNSEAAARNWRYAALSAIAQANNYQYIVTGHTASDRA 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+     R     G GL  +        ++ + RP L   R     F  + ++   ED 
Sbjct: 131 ETLLYNLMRGTG--GDGLQALTWQRPLTADICLVRPLLEITRTQTEEFCQEFHLPIWEDS 188

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           +N D ++ R R+R+ +          K++         +   V  L      +   ++  
Sbjct: 189 TNLDVKYARNRIRQELIPYLQANFNPKVESALAQTAELLQAEVEYLEQAAQKLRSEAMEW 248

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
                 N     L   +   A +   +  +   + +++++    S
Sbjct: 249 GVVSGENWAELRLNRRVLQKAPLALQRRVM--RQILQQILTDASS 291


>gi|322377896|ref|ZP_08052384.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M334]
 gi|321281072|gb|EFX58084.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M334]
          Length = 425

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 33/271 (12%)

Query: 3   LSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +   + +  F++   +  H  +++A+SGG DSM L   L +   +     I+     V+H
Sbjct: 1   MREQDFLNHFLKRGYFKKHTKVVLALSGGLDSMFLFKVLSTYQEELE---IELILAHVNH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R  +  E + +  + +   +   + ++          A AR+ RY    E  K   AT
Sbjct: 58  KQRVESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARDFRYDFFQEVMKKTGAT 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +   ++ + RPFL+  ++D  S 
Sbjct: 114 ALVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVG-DIEMIRPFLQFHKKDFPS- 169

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
                I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +      
Sbjct: 170 -----IFHFEDISNQENHYFRNRIRNS----YLPELEKENPRFRDAILSLGNEI------ 214

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
                +   +AI++   NID   L  LL  S
Sbjct: 215 -----LDYDLAIAELSKNIDVENLEQLLSYS 240


>gi|282879854|ref|ZP_06288581.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1]
 gi|281306248|gb|EFA98281.1| tRNA(Ile)-lysidine synthetase [Prevotella timonensis CRIS 5C-B1]
          Length = 448

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 128/355 (36%), Gaps = 38/355 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   IE     +  L      LVA+SGG+DS+ LL  L ++         +  A+     
Sbjct: 4   FEQHIEQYISSLSLLNKEELYLVALSGGADSVCLLRCLQAL-------GYRLEAVHCHFH 56

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR E A  ++ +  D+C++L+I      +            +  AAR+ RY+   +  + 
Sbjct: 57  LRAEEADRDLSFCQDLCAKLQIPFHSTHFDTKTYAQSHGVSIEMAARDLRYSFFRKMVQA 116

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +A  +   H  +D +ET+ +   R     G+       T +      I RP L   R  
Sbjct: 117 RHAAAVCVGHHSEDSVETILLNLVRSTGIHGL-------TGISPKKGIIVRPLLCVNRLK 169

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNA 233
           I  +L     ++  D +N     +R ++R  V         A  + + K       + + 
Sbjct: 170 IIDYLHSIQQNYVTDSTNFVADVQRNQMRLQVIPQLEKINPAAQVNILKAAQRLSDIADI 229

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
               + + +  H                 +L+YLL+                 +E++   
Sbjct: 230 FDNYLSQQVRWHPSEGYRWFPIAELTHEYILWYLLK---------DFHFSSVQVEQIWQN 280

Query: 294 LK--SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLIL--YPEETTVWDGRYQF 344
           L   SGK+   S   +++DR    +    A    P+ +L         +D ++Q 
Sbjct: 281 LHGESGKQWQSSTHELLLDRNRLLIA---ARSAFPSTVLSMPRIGNYRYDDKWQL 332


>gi|94496969|ref|ZP_01303543.1| ATPase [Sphingomonas sp. SKA58]
 gi|94423645|gb|EAT08672.1| ATPase [Sphingomonas sp. SKA58]
          Length = 314

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 26/305 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
              +AVSGG DSM LL    S    R       +A++VDH LR  + DE   V+  C   
Sbjct: 29  RFGIAVSGGPDSMALLCLAASAFPGR------VAAVTVDHGLRRESADEAALVARWCVAH 82

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I H  +    +     + A AR  RY L+     +     IMTAH  DDQLET+ MR  
Sbjct: 83  GIEHVTLPADAT-VTGNVQAWARTTRYRLMEAWRASHAIDWIMTAHHADDQLETLVMRLN 141

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+         +  ++  + RP L  R+  +++F+ +  + + +DPSN D RF+
Sbjct: 142 RGSGIGGLA-------GVRAVSGRVIRPLLGERKAMLQAFVDREGLPYVQDPSNRDRRFD 194

Query: 201 RVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R  +R  +     +D  A         D    +  +V  L  +Y+         +  D  
Sbjct: 195 RATLRMALSGATWLDAQAATRSAAALADAEAAILWSVTQLADQYIRADGDGWRLVRTDF- 253

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
                 L  L+     + G +   P   S++R +    +G +   S+G  ++      +W
Sbjct: 254 --PREYLRRLVLHMLTLAGSK--PPRGESLDRALQAAATGHQA--SLGDWLLK--GGAIW 305

Query: 318 ITRAV 322
             R  
Sbjct: 306 TLRPA 310


>gi|194335822|ref|YP_002017616.1| tRNA(Ile)-lysidine synthetase [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308299|gb|ACF42999.1| tRNA(Ile)-lysidine synthetase [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 328

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 67/336 (19%), Positives = 127/336 (37%), Gaps = 38/336 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +E +R   R LV     +LVAVSGG DSM +L    +V   R   + + +    +  L
Sbjct: 7   KFLEQLR--TRRLVEEGDRVLVAVSGGPDSMAMLSLFCAV---RPLLRAELAVAHCNFQL 61

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R   +  +  +V D C  L +   V  +       + +  +  +AR  RY    +  +  
Sbjct: 62  RGAESDGDESFVLDHCRSLDLECFVDHFDTLRFAGEWKRSVEESARILRYTFFRQVMEQK 121

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + I T H  +D  ET+     R  +  G+         +  LN  I RP L   + D+
Sbjct: 122 GFSKIATGHHVNDNAETILFNLFRGVSLPGL-------RGIRALNGKIIRPMLLFHKADM 174

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNA 233
            ++L ++ I+   D SN  + ++R  +R  V  +        L   +++  +   +++  
Sbjct: 175 VAYLKEKGITSRTDTSNYANDYDRNFIRNRVIPLIEERFAGKLMPSLRRVSEQAGELSEF 234

Query: 234 VAMLIPKYLTVHMR--------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
           + +                   S+ A+ Q  +     +L   LR   A+          R
Sbjct: 235 LELYFENLCEREPGLALNEGKLSVFALQQLTVFEQKEVLKRALRDLHAVV-------DAR 287

Query: 286 SMERVMLFLKSGKRGCVSIGRVVIDRRANF-LWITR 320
           ++++++  L S     V  G  +     +  L   R
Sbjct: 288 TLQKLVDLLGSQPGKMVMAGGQLRVLWKDGMLCFFR 323


>gi|262038802|ref|ZP_06012153.1| tRNA(Ile)-lysidine synthase [Leptotrichia goodfellowii F0264]
 gi|261747177|gb|EEY34665.1| tRNA(Ile)-lysidine synthase [Leptotrichia goodfellowii F0264]
          Length = 307

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 104/259 (40%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+A SGG DS+ L   L       S   ++ + + V+H LR   + ++ +V     
Sbjct: 23  GDKILLAFSGGPDSVFLYRILSFFQEKYS---LELALMYVNHNLRHDVEKDLEFVKRFSE 79

Query: 79  RLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              +     S       SK +     AARE RY+ ++E A  +    I T H  DD +ET
Sbjct: 80  ENGVQLYTESVNVNDYSSKNRKSTELAARELRYSALTEKADDVGYDKIATGHNLDDNVET 139

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
              R  R  + KG+         + +    I RP L   +++I   L   N  + +D +N
Sbjct: 140 FIFRLLRGTSIKGL-------KGIPEKRENIIRPILSFEKKEILDCLKANNEEYIKDYTN 192

Query: 195 TDDRFERVRVRRFVRDIDL----------HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
             + + R  +R  +  + L            L  ++K  ++   K  + V  L    + +
Sbjct: 193 EQNDYTRNYIRNDIFPMFLRINPNFRRKIDELISEIKNKENGENKKADFVKYLEENDIEI 252

Query: 245 HMRSIIAISQDILNIDSTL 263
           + R I  I  +I + +  +
Sbjct: 253 NRRKINRIYSNIFDEEGNI 271


>gi|90426215|ref|YP_534585.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisB18]
 gi|90108229|gb|ABD90266.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisB18]
          Length = 346

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 138/333 (41%), Gaps = 21/333 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++  ++ + F       A +++AVSGG DS+ L+            G    S I+VDH L
Sbjct: 9   ITAQQAKQLFADWRDAKA-VVLAVSGGPDSLALMWLAARWRKALRRGP-AISVITVDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V    + L + H  + W+  KP TG+ AAAREARY L++  A+   A+ +
Sbjct: 67  RPEAAREARDVKRHAAELDLPHRTLRWRGDKPSTGVPAAAREARYQLLARAARAAGASHV 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MTAHT DDQ ET+ MR  R     G+              + I+RP L   +  + + L 
Sbjct: 127 MTAHTRDDQAETLLMRMSRGSGIAGLAAM---ARQTERFGVIIARPLLEVSKAQLVATLD 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIP-- 239
           +  I +  DPSNTD R+ R R+R  +          + + +      + N A+ +L    
Sbjct: 184 KAKIGFATDPSNTDPRYARPRLRGLIAAYAEEGFDARNLARLASRLARANAALEVLADGA 243

Query: 240 -KYLTVHMRSIIAISQD---ILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLF 293
            ++L +          D      + + +   LL  +    G  G   L    ++   +  
Sbjct: 244 EQFLALRDNDSAQPGCDARAFAALPAEIKVRLLLRTIDRLGDEGPAELGKVETLVAEIDR 303

Query: 294 LKSGKRG-------CVSIGRVVIDRRANFLWIT 319
             +   G         ++   +I    + L I 
Sbjct: 304 AIAQNSGGHGRIALKQTLAGALITLGRDRLRIE 336


>gi|309778158|ref|ZP_07673093.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914067|gb|EFP59872.1| tRNA(Ile)-lysidine synthase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 406

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 101/256 (39%), Gaps = 16/256 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     ++ VSGG DSM LL              ++     +++  R+TA  ++  V   
Sbjct: 7   LEKGTYIIGVSGGPDSMALLDMCRK-------EGLRLVVAHMNYQKRDTANRDMELVRSY 59

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C+   I       +  +      A ARE RY +  E  K  +A+ ++ AH  DD LET  
Sbjct: 60  CAHFHIPFEA-RLQTKRCVGNFQAFAREERYRMYQELLKQYDASAVLLAHHLDDHLETYL 118

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M  +R   ++ +G+        + +   I RP +   + ++ ++  +  + +  D SN  
Sbjct: 119 MAKERGSMKEYLGI----QEEAFIMGCRIIRPLMAYSKRELEAYCRENAVPFGIDESNLS 174

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           D + R R+R  +    +  +  K K+     +   N     + K     + +     + +
Sbjct: 175 DHYARNRIRHEI----VERMSEKEKETLMETISRENIRMQQLRKDCRAFLDAWDGTLRSL 230

Query: 257 LNIDSTLLFYLLRVSA 272
             +DS  L  +L    
Sbjct: 231 RMLDSYFLEQVLITWI 246


>gi|325269878|ref|ZP_08136488.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella multiformis DSM 16608]
 gi|324987851|gb|EGC19824.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella multiformis DSM 16608]
          Length = 456

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 157/445 (35%), Gaps = 54/445 (12%)

Query: 6   IESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  VR F+ +   L   A  LVA+SGG+DS+ LL+ L  +         +  A+  +  L
Sbjct: 2   LNKVRRFIANEHLLHAEALYLVALSGGADSVALLLTLKEL-------GYRVEAVHCNFQL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R E +  + R+  ++C R  I    V +         +  +  AAR+ RY    +  +T+
Sbjct: 55  RGEESLHDERFCQELCRRENIPLHKVHFDTRSYATLHKVSIEMAARDLRYHYFFQLKETL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   H  +D +ET+ M   R    KG+         +      I RP L   R +I
Sbjct: 115 GADAVCVGHHEEDSVETILMNLVRGTGLKGL-------MGIRPKKDGIVRPLLCVSRHEI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++L  RN  +  D +N      R ++R  +            +        ++N   ++
Sbjct: 168 EAYLHARNEPFVTDSTNLVADVVRNKIRLTILPRLAEINPSVNEAILHTAEHLSNVDRIV 227

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY------------- 284
                     +II +   I   D     +  +++  +   Q   P +             
Sbjct: 228 QNVLQNTLREAIIPVDSTIGEEDIPSTDHAFKLNLKVI-RQFPAPSHLLFHVLRPLGFTP 286

Query: 285 RSMERVMLFL--KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG-- 340
             +E     L  ++G+    S   +  DR   F+      R    ++  P      DG  
Sbjct: 287 SQIEETAGHLEGQTGQVWTSSTHELTHDRDVFFVMPVEKERKHTLVMPEPGRYVYDDGLS 346

Query: 341 ----RYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSS---MPSKEGGKPLLAPF 393
               R +    S S      Q+    D  S   P+  +RA      +P    G  L++ F
Sbjct: 347 VRLTRKRLL-PSQSPSFSRSQTIIDLDASSIRFPLTLRRAAEGDRFVPLGMDGAQLVSDF 405

Query: 394 ------SRFMTKFDLPVAYAFSISF 412
                 +RF  +  L +A A     
Sbjct: 406 LTNLKRNRFEKRGQLILADATGTIL 430


>gi|307710369|ref|ZP_07646810.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK564]
 gi|307618961|gb|EFN98096.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK564]
          Length = 425

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 38/303 (12%)

Query: 3   LSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +   + +  F+R   +  H  +++A+SGG DSM L   L +   +     I+     V+H
Sbjct: 1   MREQDFLNHFLRKGYFKKHTKVVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R  +  E + +  + +   +   V ++          A AR  RY    E  K   AT
Sbjct: 58  KQRIESDWEEKELRKLAAEAGLPIYVSNFSGEFS----EARARHFRYDFFQEVMKKTGAT 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++TAH  DDQ+ET+ MR  R    +   +SG+ +  +    + I RPFL   ++D    
Sbjct: 114 ALVTAHHADDQVETILMRLIRGTRLRY--ISGIKEKQVVGE-IEIIRPFLHFHKKDFPP- 169

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
                I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +      
Sbjct: 170 -----IFHFEDTSNKENYYFRNRIRNS----YLPELEKENPRFRDAILSIGNEILDYDLA 220

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-------RSMERVMLF 293
              +     +   Q + +   +    LL         Q  L  +          E V   
Sbjct: 221 IDELSNNIDVEDLQQLFSYSESTQRVLL---------QTYLNRFPDLNLTKAQFEEVWQI 271

Query: 294 LKS 296
           LKS
Sbjct: 272 LKS 274


>gi|228476807|ref|ZP_04061455.1| tRNA(Ile)-lysidine synthase [Streptococcus salivarius SK126]
 gi|228251544|gb|EEK10681.1| tRNA(Ile)-lysidine synthase [Streptococcus salivarius SK126]
          Length = 421

 Score =  189 bits (480), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 70/322 (21%), Positives = 124/322 (38%), Gaps = 25/322 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ILVAVSGG+DSM LL  L++   D     I+     V+H  R+ ++ E  Y+    
Sbjct: 17  QHKKILVAVSGGADSMSLLHFLYNHQKDL---DIQLGIAHVNHKQRQESEHEEAYLRHWA 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++        ++        AAR  RY       K    + ++TAH  DDQ ET++M
Sbjct: 74  KEHKVPFH----YSAFSGKFSENAARTFRYEFFKRVMKDYEYSALVTAHHADDQAETIFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   L+G+     +     I RPFL   ++ +            ED SN   
Sbjct: 130 RLLRGSRLR--HLTGISAIRPFGTG-QIIRPFLHLTKDQLPVT------FHFEDRSNMSL 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R       L  L  +  KF++    +   +  L+ + L    + I      + 
Sbjct: 181 AYLRNRIRLT----YLPTLSQENPKFKEHLCLLAEEI-GLMKQALGELTKDITITDLSVF 235

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRVVIDRRANF 315
              S  +   L  +       + L       +++ +L+    G + +  G  ++  + +F
Sbjct: 236 QQQSDAVQLFLLQNYLDTFPDLQL-SKGQFNQLISYLRKNVSGKIPLINGYELVKTQTSF 294

Query: 316 LWITRAVRNL-PTLILYPEETT 336
           L       +L P  +L   ++ 
Sbjct: 295 LIRKEEAISLSPPCLLEFGKSV 316


>gi|218245074|ref|YP_002370445.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8801]
 gi|218165552|gb|ACK64289.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 8801]
          Length = 326

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 123/314 (39%), Gaps = 23/314 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYV 73
           L     IL+A+SGG DS+ L   L  + S   +   K +    DH     + DE    +V
Sbjct: 19  LPKGQRILMAISGGQDSVCLGKLLLDLQSKWGW---KIAIGHCDHRW---SYDEGIADHV 72

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +     I   +    N K      AAAR+ RY  + E A+  + T ++T HT  D+ E
Sbjct: 73  EKLAQNWGIPFYLKVANNLKET---EAAARDWRYQSLIEIAQENDFTEVVTGHTQSDRAE 129

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+     R     G  LS +        N+ + RP L   R +  +F  Q ++S  ED +
Sbjct: 130 TLLYNLIRGAGTDG--LSSLTWQRNLTPNITLVRPLLNISRPETLAFCQQFDLSIWEDAA 187

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N + ++ R R+R+ +          +++       +V  A    +     + +   I   
Sbjct: 188 NKNLKYSRNRIRQQLIPYLQTQFNPQVETNLAQTAEVLRAEVEYLETSAKMVLEQAINED 247

Query: 254 QDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--G 305
           Q  LN      +   L   ++R        +   P +  +E +   + + +R   S   G
Sbjct: 248 QTQLNRLILQSVPLALQRRVMRKFLQKISQRE--PNFEQIEALTQLIDAPRRSRTSSLPG 305

Query: 306 RVVIDRRANFLWIT 319
               + + +++ ++
Sbjct: 306 NFSAEVQGDWIILS 319


>gi|192289726|ref|YP_001990331.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1]
 gi|192283475|gb|ACE99855.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris TIE-1]
          Length = 346

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 147/333 (44%), Gaps = 23/333 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+ R F      PA I++AVSGG DS+ L+            G    + ++VDH L
Sbjct: 9   VSATEARRLFADWKAAPA-IVLAVSGGPDSLALMWLAARWRKSLKQGP-ALAVVTVDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V  + + L + H  + W   KP TG+ AAAR ARY L++  AKT+ A+ +
Sbjct: 67  RPEAAAEARAVKRLAASLDLPHRTLRWSGDKPSTGIQAAARGARYRLLANAAKTLGASHV 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MTAHT DDQ ETV MR  R       GL+ M   I  D  + ++RP L   +  + + L 
Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMAREIERD-GVVLARPLLDVPKARLIATLA 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +  I++  DPSN D RF R R+R  +  +       +      +R    +A   L+    
Sbjct: 184 KARIAFATDPSNADPRFTRPRLRELMPQLAAEGCDARSLVRLAVRAARADAALELMTDGA 243

Query: 243 TVHMRSIIA-------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
              + S+ A        ++  L + + +   LL  + +  G +   P    +E +   LK
Sbjct: 244 EQFLASLDAGLERPGVDARAFLGLAAEIQIRLLLRTLSRHGHEG-PPELGKVEVLAEALK 302

Query: 296 SGK----------RGCVSIGRVVIDRRANFLWI 318
                        R   ++   VI    + L I
Sbjct: 303 QAAARSPQAAAKIRLKQTLAGAVISLTGDRLVI 335


>gi|163783225|ref|ZP_02178219.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881559|gb|EDP75069.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1]
          Length = 317

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/303 (22%), Positives = 114/303 (37%), Gaps = 23/303 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +  +  ++   + +   + +LVA SGG DS+ L+ AL  +    +  K+       +H 
Sbjct: 7   LIRKVVRLQREEKLIPPGSSLLVAFSGGVDSVSLVDALLELRDFLNLKKLSL--AHFNHR 64

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           LR+ A +E  +  +      +   V    V     +    L   ARE RYA + +     
Sbjct: 65  LRKEADEEEEFCREFARSRELDIFVGAEDVGEVARREGRNLEEVARELRYAFLRKVKNER 124

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
              LI TAH  +D +ET  +   R    +G                 + RP    +RE+I
Sbjct: 125 GYDLIATAHHLNDLVETALIWLSRGAGLEGF-------LAFEPREGDVVRPLYGVKREEI 177

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAV 234
            S+   R + W ED SNTD RF R RVR  V  +       L     + + +    N  +
Sbjct: 178 LSYAEARGLRWVEDTSNTDPRFFRNRVRMEVIPVLKSMNPNLEETFLRTRRILKDENELL 237

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
             L    L           +++      +   +LR+   +         +  +E++   L
Sbjct: 238 EELSMNALKGAKEGNCLRVKELQGSHVAVQRRVLRLFTGVRN-------FSKIEQLRNLL 290

Query: 295 KSG 297
           K G
Sbjct: 291 KRG 293


>gi|325106138|ref|YP_004275792.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145]
 gi|324974986|gb|ADY53970.1| tRNA(Ile)-lysidine synthetase [Pedobacter saltans DSM 12145]
          Length = 449

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 136/372 (36%), Gaps = 42/372 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  I     F ++      IL+A SGG DSM ++   H           K +    +  
Sbjct: 8   FLDYISKYDLFDKN----ETILLATSGGRDSMAMVYLFH-------LSGFKTAIAHCNFN 56

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR E +  +  +V +   +L     +  +       + +  +  AAR+ RY    +    
Sbjct: 57  LRGEESVRDEIFVKNTALKLNTPIHIAHFDTTNYAEEHKISIQMAARDLRYDFFEDLCAE 116

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                I  AH  +D +ETV +   R       GL G+  +        I RP L   RE+
Sbjct: 117 FKYQKIAVAHHHNDSIETVLLNLIRGTGI--AGLHGIKHSKN-----TIIRPLLCFTREE 169

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVK 229
           I  F+ ++ I + ED SN  D++ R ++R         +           +  F +L   
Sbjct: 170 IDQFVSEQKIDFVEDSSNASDKYARNKIRLKIIPEMEKINPSLNQTFRKNINYFSELEDF 229

Query: 230 VNNAVAMLIPKYLTVHMRSI-IAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
           VN+ +       L  +     I I + + L+    +L  +L            L     +
Sbjct: 230 VNHEMNKYKSDLLEPYTNGFKIGIKKIEALHSTKFILSEILLPLGFNTTSINDL-----L 284

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFL--WITRAVRNLPTLILYPEETTVWDGRYQFQ 345
             V     SGK  C    R+++DR   F+   + +  +    + +     T+   ++  +
Sbjct: 285 SAVQQRTISGKTFCSEDYRILLDREYIFIKKLLKKERQ--EKIEIPSGTETIHFNQFDLR 342

Query: 346 NLSDSLIQIGPQ 357
            +SD   +  P 
Sbjct: 343 -ISDLSKEEKPD 353


>gi|15837261|ref|NP_297949.1| cell cycle protein [Xylella fastidiosa 9a5c]
 gi|61217426|sp|Q9PFJ8|TILS_XYLFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|9105537|gb|AAF83469.1|AE003910_5 cell cycle protein [Xylella fastidiosa 9a5c]
          Length = 437

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 115/315 (36%), Gaps = 15/315 (4%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F R       +LVA SGG DS  LL  L S  + R  G     AI + H L E A     
Sbjct: 7   FPRIPDPGVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLHEHADAWTA 63

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           + +  C++  I   +     S      + AA          H        +  AH  DDQ
Sbjct: 64  HCAAFCTQHYIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 122

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET  +R+ R   +   GL+ M     +     + RP L   R  +  +  Q+++ W ED
Sbjct: 123 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHSRAQLLDYAQQQHLDWIED 178

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250
            SN D R +R  +R  V  + LH  + +          +  A A L+     V +  ++ 
Sbjct: 179 SSNADLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 237

Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305
              A+  + L          L  +     G   LP      +ER +L  +     C +  
Sbjct: 238 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 297

Query: 306 RVVIDRRANFLWITR 320
              I R    L++ R
Sbjct: 298 HTEIRRWRLRLYLHR 312


>gi|212703024|ref|ZP_03311152.1| hypothetical protein DESPIG_01062 [Desulfovibrio piger ATCC 29098]
 gi|212673612|gb|EEB34095.1| hypothetical protein DESPIG_01062 [Desulfovibrio piger ATCC 29098]
          Length = 351

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/335 (21%), Positives = 123/335 (36%), Gaps = 28/335 (8%)

Query: 9   VRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           V  F R    +      L+AVSGG+DS  LL  +  +    ++   +    +VDH LR  
Sbjct: 21  VERFCRDGLKMADGKSWLLAVSGGADSTALLFIMVLLAPRHNW---RLHVATVDHQLRPE 77

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATL 121
           + ++  +V+ +C   RI   +++   ++       G   AAR ARYAL+ +      AT 
Sbjct: 78  SAEDTAFVARLCQDWRIPCRILTADVARLARQDGLGTEEAARLARYALLEQARLACGATA 137

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+  H   D  E   +R  R      +G          D    + RP LR     ++  L
Sbjct: 138 ILLGHHRSDVAEDQLLRFLRGTGWPALG-----GMRAEDAERHLLRPLLRTDNRALKELL 192

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLI 238
               I W ED SN D R+ R R+R  V  +   +   L        +L     +     +
Sbjct: 193 HHCGILWREDSSNADTRYTRNRLRHTVLPLLRQENPRLEEACLHLWELAGIDGDYWQQEL 252

Query: 239 PKYLT----VHMRSIIAISQDILNIDSTLLF-----YLLRVSAAICGGQISLPGYRSMER 289
            ++L           I + + +L      L        +   A + GGQ       ++++
Sbjct: 253 ERHLARTPWQEASGSITLPRALLRGAHAALRLRLYHRAVARLARLSGGQARSATLLALDQ 312

Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
                + G    +  G ++   +   +      R 
Sbjct: 313 AWQDGRGGTTFQLP-GNIMAHLKGGSIRFYVENRQ 346


>gi|293364526|ref|ZP_06611251.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037]
 gi|307702816|ref|ZP_07639766.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037]
 gi|291317034|gb|EFE57462.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037]
 gi|307623672|gb|EFO02659.1| tRNA(Ile)-lysidine synthetase [Streptococcus oralis ATCC 35037]
          Length = 425

 Score =  188 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 109/262 (41%), Gaps = 22/262 (8%)

Query: 9   VRFFVRS--LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +  F+R       + +++A+SGG DSM L   L +  ++     I+     V+H  R  +
Sbjct: 7   LNHFLRKEYFKKHSKVVLALSGGLDSMFLFQLLSTYQNELG---IELILAHVNHKQRSES 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             E   +  +     +   + S+          A ARE RY    +  K + AT ++TAH
Sbjct: 64  DWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKEVGATALVTAH 119

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ MR  R    +   L+G+ ++ + D ++ I RP L+  ++D         I
Sbjct: 120 HADDQVETILMRLIRGSRLR--HLTGIKESQVVD-DIEIIRPLLQFHKKDFSP------I 170

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
              ED +N ++ + R RVR       L  L  +  + +   + +   ++        +  
Sbjct: 171 FHFEDQTNQENTYFRNRVRNR----YLPELEKENPRLKSAILDLGREISDYQATITELSK 226

Query: 247 RSIIAISQDILNIDSTLLFYLL 268
           +  +    ++ +        LL
Sbjct: 227 QIDVEDLNELFSYSQQTQGILL 248


>gi|293977842|ref|YP_003543272.1| tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri DMIN]
 gi|292667773|gb|ADE35408.1| tRNA(Ile)-lysidine synthetase, N-terminal domain
           protein/tRNA(Ile)-lysidine synthetase, C-terminal domain
           protein [Candidatus Sulcia muelleri DMIN]
          Length = 436

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 19/222 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  I   +F++++      I V+VS G DSM LL  L  +             I  +  
Sbjct: 7   FLKIINK-KFYLKN----KKIYVSVSSGLDSMVLLDVLIKIC------NFTICVIHCNFN 55

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR   +  +  ++ + C + +I     ++   K    +   AR+ RY             
Sbjct: 56  LRGKDSDKDELFIQEFCLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCD 115

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I   H  DD +ET ++   R     G G+ G+     +     I RP     +++I S+
Sbjct: 116 YIALGHHLDDSIETFFINIIR-----GTGIKGLIGINNFKN--KIIRPLSFFSKKEIISY 168

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
             + NI W ED SN D ++ R R+R F++ I  +  Y   KK
Sbjct: 169 AQENNIKWREDNSNYDHKYLRNRIRFFLKPILDYKFYNGFKK 210


>gi|89900146|ref|YP_522617.1| tRNA(Ile)-lysidine synthetase-like protein [Rhodoferax
           ferrireducens T118]
 gi|89344883|gb|ABD69086.1| tRNA(Ile)-lysidine synthetase-like [Rhodoferax ferrireducens T118]
          Length = 320

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 75/316 (23%), Positives = 115/316 (36%), Gaps = 29/316 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA SGG+DS  LL+A             +  AI + H ++    D  R+   VC RL
Sbjct: 17  PLAVAFSGGADSTALLLACAEKWPG------QVHAIHIHHGVQAAGDDFERHCQAVCVRL 70

Query: 81  RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL----IMTAHTFDDQLETV 135
            +   V               AAR ARY      A    A +    I  A   DDQ+ET+
Sbjct: 71  GLPLVVKRVDARHASGQSPEDAARRARYKAFEAVALVEYAQVAIKSIALAQHADDQVETL 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     GM              L   RP L     DIR +L+ R ++W EDP+N 
Sbjct: 131 LLALSRGAGLPGMSAMPAS---WRRAGLTYHRPLLGVAASDIRRWLVGRGVAWIEDPTNV 187

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ- 254
           D++F R R+R  +    L AL     +F+D  V+     A      L V  + +  I   
Sbjct: 188 DEQFTRNRIRARL----LPALDATFPQFRDTFVRSAAHAAQAQAVLLDVAAQDLAHIGDP 243

Query: 255 ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK----SGKRGCVSIGR 306
                +  +       +LR         +  P    +  ++  +      G +  + +G 
Sbjct: 244 PAITQLQALSRPRQANVLRHWLNTAFQAV--PSTAQLAELLDQIAVCTTRGHQIRIKVGT 301

Query: 307 VVIDRRANFLWITRAV 322
            + +RR   L      
Sbjct: 302 GLCERRGAVLHWYNPA 317


>gi|330991882|ref|ZP_08315831.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1]
 gi|329760903|gb|EGG77398.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter sp. SXCC-1]
          Length = 425

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 148/382 (38%), Gaps = 28/382 (7%)

Query: 17  VYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            +P H   + VAVSGG+DSM L +       D          + VDH LR  ++ E    
Sbjct: 26  PWPGHGVPVAVAVSGGADSMALAVLARQWRPD-------VVGLVVDHGLRAESRREAEQT 78

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               S L ++  ++  +  +    +   AR  RYA +S   + I A  ++ AH   DQ E
Sbjct: 79  IGRLSALGLSARLLVLEGLERGPRMAERARRMRYAALSAACREIGALDLLVAHHAGDQAE 138

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR      + G+    +   +    ++ + RP L   +  + + +    ++W EDPS
Sbjct: 139 TVMMRQHAASGDDGLAGMALVTPM---HDVRLVRPLLSFAKPALYATVRAAGLAWVEDPS 195

Query: 194 NTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           N D R  R R R+ +        AL  +  +    R++ + A A  +  +   H    + 
Sbjct: 196 NADLRTGRARARQALAQDAGRDAALKAQALQAGQARMERDRADACWLASHARFHPGGWVV 255

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
           +   +      +L  L+RV     GG    P      R+ L  ++ +   ++   ++  R
Sbjct: 256 LPAGL--APPRILSALVRV----VGGHDYPPDR---TRINLLAQAPQPATLAGVAIMPWR 306

Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRY--QFQNLSDSLIQIGPQSYRKADVPSGIP 369
              +L         P +  +     VWD R+  +  +L          +           
Sbjct: 307 DGQWLVAREEAAMAPRMPAW--TECVWDRRFVLRAGSLPPDCAMGAAGAVASWWPARRGR 364

Query: 370 PIIAQRALSSMPSKEGGKPLLA 391
           P+   R L ++P+   G  ++A
Sbjct: 365 PVWPARVLRTLPALWHGGRVVA 386


>gi|331265449|ref|YP_004325079.1| putative MesJ/Ycf62 family protein [Streptococcus oralis Uo5]
 gi|326682121|emb|CBY99737.1| putative MesJ/Ycf62 family protein [Streptococcus oralis Uo5]
          Length = 425

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 105/257 (40%), Gaps = 23/257 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     + +L+A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLQKEYFKKH----SKVLLALSGGLDSMFLYHLLSTYQKELG---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E   +  +     +   + S+          A ARE RY    +  K   AT 
Sbjct: 59  QRNESDWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKDAGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   L+G+ +  + D  + I RP L   ++D     
Sbjct: 115 LITAHHADDQVETILMRLIRGSRLR--HLTGIKEGQVVD-GIEIIRPLLNFHKKDFLP-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMK--KFQDLRVKVNNAVAMLI 238
               I+  ED +N +  + R R+R  ++ +++     LK     F          +  L 
Sbjct: 170 ----IAHFEDQTNQESTYFRNRIRNRYLPELEKENPRLKSALLDFGREISDYQATITELS 225

Query: 239 PKYLTVHMRSIIAISQD 255
            +     +  + + SQ 
Sbjct: 226 KQIDVEDLNELFSYSQQ 242


>gi|264677341|ref|YP_003277247.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni CNB-2]
 gi|262207853|gb|ACY31951.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni CNB-2]
          Length = 336

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 27/315 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  + VA SGG+DS  LL+A H+    R        AI V H L+  A +  R+   +C
Sbjct: 28  PPLPLAVAFSGGADSSALLLACHARWPGR------VRAIHVHHGLQAAADEFQRHCEQLC 81

Query: 78  SRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL----------IMTAH 126
           +R  IA  V +      Q      AAR+ RYA + + A+                +  A 
Sbjct: 82  ARHGIALKVCAIDARNVQGQSPEDAARQGRYAALIQAARQPWLDAQGAALDAVRSMALAQ 141

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ +   R     G+              L   RP L    + +R +L  RN+
Sbjct: 142 HADDQVETLLLALSRGAGVAGLAAM---PGHWQRAGLEWFRPLLEVPGQALRDWLRLRNL 198

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           SW EDP+N D  + R R+R  +  +           F         A  +L  +     +
Sbjct: 199 SWVEDPTNADPGYTRNRIRAQLLPVLEQVFPQFRSTFARSSAHCAQASQLLDQQAAADLL 258

Query: 247 RSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL----KSGKRGC 301
              +  +   L  +    L  +LR       G  + P    + ++M  L      G R  
Sbjct: 259 LVGVPPAIKALQGLSELRLGNVLRYWLRTEHG--TTPTAAQLAQLMAQLGVCTTRGHRIH 316

Query: 302 VSIGRVVIDRRANFL 316
           + +GR  ++R+   L
Sbjct: 317 IKVGRGFVERQGASL 331


>gi|227873318|ref|ZP_03991580.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268]
 gi|227840833|gb|EEJ51201.1| possible tRNA(Ile)-lysidine synthase [Oribacterium sinus F0268]
          Length = 342

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 125/330 (37%), Gaps = 28/330 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           + +     IL+A+SGG+DSM LL  L  + +  SF      A+ V H +R + A ++  +
Sbjct: 17  QWIREGEQILLALSGGADSMYLLYFLKELQNHLSF---SLRAMHVQHGIRGDEAVEDATF 73

Query: 73  VSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-----TLIM 123
                   ++        V     + + G+  AAR  RY  + E A    A     T I 
Sbjct: 74  SRQQAELYQVPFLEYTCSVPDYAEENKLGIEEAARTLRYKALKEEALRWQAESGRKTKIA 133

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDIRSFLL 182
            AH  DDQ ET+     R       G+SGM  + +L +    + RP L  R+E+I   L 
Sbjct: 134 LAHHMDDQAETILFHLIRGAGF--SGISGMKAEDLLSEAETTLLRPLLSLRKEEILKRLE 191

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVA 235
           +  I + ED +N D  + R  +R  +           +  L    + F +          
Sbjct: 192 ELGIPYREDSTNRDKSYARNYLRLEILPALEKINAGAVKHLLEAAELFSETEAYFQEKAT 251

Query: 236 MLIPKY----LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
             I +Y     +   + I      +   ++     + + +  +  G  +  G      + 
Sbjct: 252 EWIKRYGERKESSTGKCISLSIPQLKKENALFRREIYKEAIFLLRGNTTEFGKLHYHGID 311

Query: 292 LFLKSGKRGCVSI-GRVVIDRRANFLWITR 320
             LK G  G +S+   V  +     L + +
Sbjct: 312 RLLKRGNGGRLSLPKGVKAEVEQKRLLLEK 341


>gi|71898703|ref|ZP_00680872.1| PP-loop [Xylella fastidiosa Ann-1]
 gi|71731468|gb|EAO33530.1| PP-loop [Xylella fastidiosa Ann-1]
          Length = 435

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 132/386 (34%), Gaps = 22/386 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F R       +LVA SGG DS  LL  L S  + R  G     AI + H L E A     
Sbjct: 5   FPRIPDPGVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNENADAWTA 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           + +  C++  I   +     S      + AA          H        +  AH  DDQ
Sbjct: 62  HCAAFCTQHDIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 120

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET  +R+ R   +   GL+ M     +     + RP L   R  +  +  Q+++ W ED
Sbjct: 121 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHSRAQLLDYAQQQHLDWIED 176

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250
            SN D R +R  +R  V  + LH  + +          +  A A L+     V +  ++ 
Sbjct: 177 SSNADLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 235

Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305
              A+  + L          L  +     G   LP      +ER +L  +     C +  
Sbjct: 236 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 295

Query: 306 RVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
              I R    L++ R           P+   +W G           + +    +      
Sbjct: 296 HTEIRRWRLRLYLHRPQ-----PPWPPDWQPLWSGTAPLILPDGGQLHLESTDHETVPGF 350

Query: 366 SGIPPIIAQRA--LSSMPSKEGGKPL 389
                + A+R      +P +    PL
Sbjct: 351 PHPLRVRARRGGERLILPRRTHSHPL 376


>gi|237750957|ref|ZP_04581437.1| tRNA(Ile)-lysidine synthase [Helicobacter bilis ATCC 43879]
 gi|229373402|gb|EEO23793.1| tRNA(Ile)-lysidine synthase [Helicobacter bilis ATCC 43879]
          Length = 369

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 157/372 (42%), Gaps = 32/372 (8%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           +++     L+A SGG DS  L   L          KI+F    +D+  R  +KDEV Y  
Sbjct: 17  AILSKNKNLLAFSGGIDSTALFFVLME-------HKIEFDIAIIDYGKRSQSKDEVLYAK 69

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  + +     +  ++          AR  RY    +   T +   ++TAH FDD+LE 
Sbjct: 70  SLAKQYKKQCYTLISESITKD--FEHNARNIRYDFFHKIIITHDYHNLITAHHFDDRLEW 127

Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +M+          +G   + + ++++   ++ RPF+   +++I ++    NI +  D S
Sbjct: 128 FFMQLSCGAGLNTLLGFHDITERMIHNKVYYLVRPFITYTKQEILNYNHTNNIKYFIDTS 187

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           N+D  ++R   R+ +  +        +KK F  L  +        +  ++ V +   + I
Sbjct: 188 NSDISYKRNLFRQQLSGLMNRDFINGVKKSFAYLEKERAR-----LYPHVVVCVDYNLFI 242

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
            +  ++   T+     R+   + G Q        ++R +  LK+G   CV  G++VI + 
Sbjct: 243 CKSHIHEIHTIDMLTKRLGYIMSGKQ-----KDELQRTL--LKNGA--CVMGGKIVIAKN 293

Query: 313 ANFLWITRAVRNLPTLILYPEETTV----WDGRYQFQNLSDSLIQIGPQS---YRKADVP 365
            +F+++   +R L    L            + ++ +  +    I+I  Q    YR  ++P
Sbjct: 294 ESFIFVGIEIRWLIKAFLEKRREKYIQLPCNIKHLYNLIQKDSIKIPKQEREKYRIQNIP 353

Query: 366 SGIPPIIAQRAL 377
             I P++   +L
Sbjct: 354 PKIRPLLYINSL 365


>gi|290889686|ref|ZP_06552775.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429]
 gi|290480683|gb|EFD89318.1| hypothetical protein AWRIB429_0165 [Oenococcus oeni AWRIB429]
          Length = 299

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 98/253 (38%), Gaps = 9/253 (3%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +L+A+SGG DS  L   L    S+    +       VDH LR  + +E + + D  +  
Sbjct: 23  KLLLAISGGVDSTVLADLLFKYESN---PRSHLFLAHVDHQLRVDSANETKLIDDQFANR 79

Query: 81  RIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +      W   K P +G+  AAR+ RY      A  + A  I+ A   DDQ ET  ++ 
Sbjct: 80  GLCVFHEKWPLEKHPHSGIEDAARKFRYDFYKRMALKVGARKIILAQHADDQAETTLLKI 139

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    + +        +  D  + + RP L   + +I  +  + ++ W ED +N D  +
Sbjct: 140 IRGADWQTVSAMEWSRPLEKDSPIEVVRPLLNVEKSEIYDYAEKNHLKWIEDSTNKDPDY 199

Query: 200 E-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             R ++R  V    L AL                 +  +    L   ++  +  S   L 
Sbjct: 200 TSRNQIRNVV----LPALKQINPNSARNIASFAEQIREVNENQLIEMLKIWLHDSIGFLP 255

Query: 259 IDSTLLFYLLRVS 271
           I  + L    R+ 
Sbjct: 256 IKRSQLEQFERLL 268


>gi|313673407|ref|YP_004051518.1| tRNA(ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940163|gb|ADR19355.1| tRNA(Ile)-lysidine synthetase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 420

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 23/232 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSD 75
           +  + ++VA SGG DS+ LL  L+ +  +     I   A  V+H +R    + +  +   
Sbjct: 23  LKNSKVVVAFSGGRDSVALLHYLYLISKN---YNIDLFACHVNHGIRGEMGERDENFCKS 79

Query: 76  VCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            C +  I   +          +    +  AAR+ RY  + E  + ++A  I TAH FDD 
Sbjct: 80  FCGKFDIPLFIKKIDVPSYVRRFNLSVEDAARKLRYQALFEVLQKLDADYIATAHHFDDI 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET +++     A   +          +D +  + RPF    R  I  ++    + + +D
Sbjct: 140 VETFFVKVFTGSAIYNL--------KGFDRSDRVLRPFANVERIQIEKYIKHNKLEYVDD 191

Query: 192 PSNTDDRFERVRVRRFVRDID-------LHALYLKMKKFQDLRVKVNNAVAM 236
            +N    + R  VR  +           L+ +Y   ++  +L+  ++N +A 
Sbjct: 192 ETNFSSDYVRNWVRLKIIPEIRNYNRGYLNNIYSIQEQSSELKNFLHNHLAD 243


>gi|307711226|ref|ZP_07647648.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis SK321]
 gi|307617188|gb|EFN96366.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis SK321]
          Length = 425

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/270 (25%), Positives = 115/270 (42%), Gaps = 35/270 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A +++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKVVLALSGGLDSMFLFKVLSTYKKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRVESDWEEQELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D     
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPP-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F++  + + N +       
Sbjct: 170 ----IFHFEDISNQENHYFRNRIRNS----YLPELEKENPRFRNAILSIGNEI------- 214

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
               +   +AI++   NID   L  LL  S
Sbjct: 215 ----LDYDLAIAELSKNIDVENLDQLLSYS 240


>gi|205371981|ref|ZP_03224799.1| cell cycle protein MesJ [Bacillus coahuilensis m4-4]
          Length = 456

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 18/241 (7%)

Query: 8   SVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63
            VR F+   R L+   H+LV VSGG+D    ++ L  +++ +   ++K + ++VDH LR 
Sbjct: 6   KVRQFIDKERLLMGEEHVLVGVSGGAD---SMMLLSMLMALQKEKELKITVVTVDHMLRG 62

Query: 64  ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           E +  ++ +V   C +  I+       V    +  +  L   AR+ RY    E  K + A
Sbjct: 63  EESYQDLEFVRAYCEQHGISFVGKQVNVKHALTAQKGSLQQVARDMRYGAFLETLKAVKA 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T++      DDQ+ETV M   R    KG G+    D         + RP L   ++DI S
Sbjct: 123 TVLALGQHGDDQVETVLMGLTRGGTSKGYGIPITRD----FHGYPLIRPLLPLTKDDIYS 178

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVR-RFVRDI--DLHALYLKMKKFQDLRVKVNNAVAM 236
           F+    I + EDPSN  + + R R R   +  +  +   ++    +F   + + ++ +  
Sbjct: 179 FVQHHRIPYREDPSNQKEDYTRNRFRLHTLPFLKSENPKVHEHFLRFSKEQREDDDYLWE 238

Query: 237 L 237
           L
Sbjct: 239 L 239


>gi|78187463|ref|YP_375506.1| MesJ protein [Chlorobium luteolum DSM 273]
 gi|78167365|gb|ABB24463.1| MesJ protein [Chlorobium luteolum DSM 273]
          Length = 332

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 88/239 (36%), Gaps = 19/239 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R +     +LVAVSGG+DSM LL    +V +         + +  +  LR   +  +  +
Sbjct: 22  RLVGQGDRVLVAVSGGADSMALLTLFIAVQAALG---CTLAVVHCNFGLRGAESDADEAF 78

Query: 73  VSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V +    + +   V  +         +  +   AR  RY    E  +    T + T H  
Sbjct: 79  VRECARLMGLPCFVRQFDTLASSVAARRSVEEEARVLRYGYFQEIIEREGYTKVATGHHV 138

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D  ET+     R      +         +      I RP L   R +I  +L Q+   +
Sbjct: 139 GDNAETMLFNLFRGVTLPSL-------RGIRSRRGHIIRPLLFMHRAEIEEYLKQQGTGY 191

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLT 243
             D +N DDR++R  +R  V  +     +      M++  +   ++   + +   + L 
Sbjct: 192 RTDATNADDRYDRNFIRNRVIPLVEERFHGRFLPSMQRLSEQSGELEAFLELYFERLLA 250


>gi|39934200|ref|NP_946476.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           CGA009]
 gi|61216538|sp|Q6NAQ6|TILS_RHOPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|39648048|emb|CAE26568.1| YaeN protein [Rhodopseudomonas palustris CGA009]
          Length = 346

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/336 (28%), Positives = 148/336 (44%), Gaps = 23/336 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+ R F      PA I++AVSGG DS+ L+            G    + ++VDH L
Sbjct: 9   VSATEARRLFADWKAAPA-IVLAVSGGPDSLALMWLAARWRKALKRGP-ALAVVTVDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V  + + L + H  + W   KP TG+ AAAR ARY L+++ AKT+ A+ +
Sbjct: 67  RPEAAAEARAVKRLAASLDLPHRTLRWSGDKPSTGIQAAARGARYRLLAKAAKTLGASHV 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MTAHT DDQ ETV MR  R       GL+ M   I  D  + ++RP L   +  + + L 
Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMAREIERD-GVVLARPLLDVPKARLIATLA 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +  I++  DPSN D RF R R+R  +  +       +      +R    +A   L+    
Sbjct: 184 KARIAFATDPSNADPRFTRPRLRELMPQLAAEGCDARSLVRLAVRAARADAALELMTDGA 243

Query: 243 TVHMRSIIAISQ-------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
              + S+ A S+         L + + +   LL  + +  G +   P    +E +   L 
Sbjct: 244 EQFLASLDAGSERPGVNARAFLGLAAEIQIRLLLRTLSRHGHEG-PPELGKVEALAEALS 302

Query: 296 SGK----------RGCVSIGRVVIDRRANFLWITRA 321
                        R   ++   VI    + L I  A
Sbjct: 303 QAAARRPQAAAKIRLKQTLAGAVISLTGDRLVIVPA 338


>gi|290969234|ref|ZP_06560759.1| tRNA(Ile)-lysidine synthetase [Megasphaera genomosp. type_1 str.
           28L]
 gi|290780740|gb|EFD93343.1| tRNA(Ile)-lysidine synthetase [Megasphaera genomosp. type_1 str.
           28L]
          Length = 458

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 110/293 (37%), Gaps = 21/293 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L A SGG DS+ LL  L      R    I+ +   ++H +R  A DE R V    +   
Sbjct: 21  VLAACSGGPDSLALLDVLARC---RERLHIEVAVAYINHGIRAAAFDEERRVQQAAAARG 77

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               +    V     + +  L  AARE RY L+ +  + I A  I  AH  +DQ ETV  
Sbjct: 78  CPCYIRRTAVPALARRRKQSLETAAREERYRLLRDVQRQIRAQSIAVAHHQNDQAETVLW 137

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R       GL+GM           I RPFL   R +I  +  +R++  C D +N + 
Sbjct: 138 HLVRGSGL--TGLAGM-----RPRREKIIRPFLCVTRAEITDYAARRHLHPCHDETNDEL 190

Query: 198 RFERVRVR----RFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSII 250
              R ++R     F+  ++   +    +    ++ +   +         +   V    I+
Sbjct: 191 HCTRNKLRLQYLPFLAQLNPAIIADLNRLAAVVQAEDDVLRQQTEEAYRRTAQVRAEGIV 250

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
                +    + L   L+R +     G ++      +E V   L        +
Sbjct: 251 LSKTRLAEQPTALQRRLIRRAYEALTGHMTGLSLEQVETVRHLLDKEPGKRFA 303


>gi|126667577|ref|ZP_01738547.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Marinobacter sp. ELB17]
 gi|126628003|gb|EAZ98630.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Marinobacter sp. ELB17]
          Length = 212

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 12/203 (5%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +R   R L     + +A SGG DS  LL    ++        I  SA+ ++H L+  A +
Sbjct: 16  LRDLARQLPQHDRLCIAFSGGLDSSLLLHLFAAITP----ASIALSALHINHQLQPNAAE 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
              +  DVC+RL +   VVS      ++   GL  AAR ARY +  ++ +     L++ A
Sbjct: 72  VDAFCRDVCARLSVPLRVVSVTVPVKAEGVGGLEQAARAARYGVFEQYLRA--DELLLLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQLETV  R  R     G+        +       ++RP L   R  + ++     
Sbjct: 130 HHGDDQLETVLFRLFRGSGVAGLAGMPFTRALCARA---LARPLLEFSRAQLEAWAEGAG 186

Query: 186 ISWCEDPSNTDDRFERVRVRRFV 208
           + W EDPSN+D RF+R  +R  V
Sbjct: 187 LPWMEDPSNSDQRFDRNYLRNSV 209


>gi|307153268|ref|YP_003888652.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7822]
 gi|306983496|gb|ADN15377.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7822]
          Length = 322

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 126/312 (40%), Gaps = 19/312 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +LVAVSGG DS+     L  ++  +S  + + +    DH    T      +V  
Sbjct: 20  LPKKERLLVAVSGGQDSL---CLLKLLVDLQSKWEWELAIAHCDHGW-PTDAGMSDHVQQ 75

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +     I + + +  + K      AAAR+ RY  + E A     +L++TAHT  D+ ET 
Sbjct: 76  IAQSWGIPYYLKTAHHLKET---EAAARKWRYQALIEIATEQGFSLVVTAHTKTDRAETF 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R     G  LS +        N+W+ RP L   R +   F  Q N+S  ED  N 
Sbjct: 133 LYNLIRGAGTDG--LSSLTWVRSLSENIWLVRPLLEISRSETYQFCQQFNLSIWEDILNQ 190

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKF----QDLRVKVNNAVAMLIPKYLTVHMRSI-I 250
           + ++ R R+R  +          +++K      ++       +     ++L   +    I
Sbjct: 191 NLKYARNRIRHELLPYLQTHFNPQVEKALIQSAEILRSEGEYLEETAQQWLEKSLSEDKI 250

Query: 251 AISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSIGRVV 308
           AI + IL  I   L   ++R        +   P +  +E ++  + +  +    S+   +
Sbjct: 251 AIHRQILRGIPLALQRRVMRRFLTTVLSKA--PNFEQIEALVNLINAPNRSSTFSLPGTI 308

Query: 309 -IDRRANFLWIT 319
            I+ +  ++ ++
Sbjct: 309 TIEVQGEWIRVS 320


>gi|330443788|ref|YP_004376774.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58]
 gi|328806898|gb|AEB41071.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pecorum E58]
          Length = 318

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/265 (24%), Positives = 116/265 (43%), Gaps = 23/265 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  F  SL      L+  SGGSDS+ L   L S+       KI F+A+ VDH  RE +
Sbjct: 11  KRLEAFFSSLDRKKSYLLGFSGGSDSLFLFYVLKSL-------KINFTAVHVDHGWRECS 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++E + + + C R +I++         K +  L  AAR+ARYA   +     N + +  A
Sbjct: 64  REEAKALKEFCHREKISYIGHRLSPEEKGERDLENAARKARYAFFYQLCVQQNFSGVFLA 123

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDT--ILYDLNLWISRPFLRCRREDIRSFLLQ 183
           H  +DQ ET+  R       +G  LS +       +   + + RP L   +  + S L +
Sbjct: 124 HHANDQAETLLKRVL-----EGAHLSNLKGMTVSSFYQGMQLLRPLLHIPKARLMSLLHR 178

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH--------ALYLKMKKFQDLRVKVNNAVA 235
             IS+  D +N D+R+ R R+R+ +               L+   ++ ++L   + +   
Sbjct: 179 EKISYISDETNEDERYLRARMRKKLFPWLEEVFGKNISSPLFALAEESKELAEYMESQTE 238

Query: 236 MLIPKYLTVHMRSIIAISQDILNID 260
             + K        ++ IS+ ++   
Sbjct: 239 PFLSKVTCQQGGQVLPISKGLIQQP 263


>gi|156740870|ref|YP_001430999.1| hypoxanthine phosphoribosyltransferase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232198|gb|ABU56981.1| hypoxanthine phosphoribosyltransferase [Roseiflexus castenholzii
           DSM 13941]
          Length = 676

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 132/335 (39%), Gaps = 36/335 (10%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           S ++SVR  +R    ++  A ++VAVSGG DS+ LL AL  +  D +        + +DH
Sbjct: 3   SLVDSVRAMLRRYRMIMPGAPVVVAVSGGPDSLCLLDALVHLRDDLA---CDLHVVHLDH 59

Query: 61  CLRETAKDEVRYVSDVCSR-LRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAK 115
            LR              +  L +  +V +        +    L AA R ARY L++  A 
Sbjct: 60  RLRGAEAAAEAAFVAETAACLNLPCTVEAVDVRALALERNLNLHAAGRLARYRLLARVAL 119

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--------------- 160
           TI A  + TAH  DDQ ETV +   R       GL GM   + ++               
Sbjct: 120 TIGAQAVATAHHADDQAETVLLHLVRGAGV--AGLRGMRPVVAWEEWRTFAGDPSLQADH 177

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DL 213
           L   + RP L   R  I ++  +R ++   DPSN D R+ R R+R+ V  +         
Sbjct: 178 LRPRLIRPLLDVPRARIEAYCTERGLTPRRDPSNADRRYLRTRIRQDVLPVLTALNPQIA 237

Query: 214 HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273
            AL        ++   +   +       +      I+   +   ++   L    LR + A
Sbjct: 238 TALGRTAADCAEVADFLEQELDRAWLTLVVARANRIVFDGRRWRDLPPALQHAALRRAYA 297

Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
           + GG  +L G   + R    +  G    + +   V
Sbjct: 298 LLGGSDTL-GRDDVVRACDAVGRGVGKRIELPGGV 331


>gi|295425667|ref|ZP_06818354.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylolyticus DSM 11664]
 gi|295064683|gb|EFG55604.1| tRNA(Ile)-lysidine synthase [Lactobacillus amylolyticus DSM 11664]
          Length = 420

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 139/377 (36%), Gaps = 32/377 (8%)

Query: 8   SVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +  F +     +    +++A SGG DSM LL  L+ +    +F          DH LR 
Sbjct: 2   KIELFFKQHQIKLNNKKLVIAASGGPDSMALLDMLNELRKSHNF---SLIVAHFDHQLRV 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            ++ E   +++ C    +  +   W K  +P+TG+ AAAR  RYA +S+      A  ++
Sbjct: 59  DSQKETELLTEYCHSHNLPLAKGVWLKKEQPRTGIEAAARHFRYAFLSQVVAQYQADYLL 118

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DD LE + ++  R    + M        +       + RP L   + ++  +  Q
Sbjct: 119 TAHHGDDLLENILLKFIRSGNPQEMNSLQAVGKM---HGTALLRPLLSTSKAELLEYDQQ 175

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
            +I++ ED +N  D   R R+R  V  +        ++    LR   +  V   +     
Sbjct: 176 HHIAFIEDETNAKDDTLRNRLRHHVVPLLKKENSHLLENA--LRYSDDEKVLTALADEKV 233

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
             +            I    L  L +   A                  ++    KR    
Sbjct: 234 AEIGRPERFLDQAYRIKGEALLQLDQRQRAYFWQN------------FIWQTWHKRCSHY 281

Query: 304 IGRVVIDRRANFLWITRA---VRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGP---- 356
           +    +     + ++      +R  P ++   EE T  D ++    +  SL  IG     
Sbjct: 282 LTGYNLRLYQKYYYLWPQKLLLRQEPKVVRAEEEFTFRDHKFMLSVVEHSLPLIGDFWSD 341

Query: 357 -QSYRKADVPSGIPPII 372
              ++ A +P+G    +
Sbjct: 342 EHEFKIASLPAGSKLQL 358


>gi|71274509|ref|ZP_00650797.1| PP-loop [Xylella fastidiosa Dixon]
 gi|71900338|ref|ZP_00682473.1| PP-loop [Xylella fastidiosa Ann-1]
 gi|170730758|ref|YP_001776191.1| cell cycle protein [Xylella fastidiosa M12]
 gi|71164241|gb|EAO13955.1| PP-loop [Xylella fastidiosa Dixon]
 gi|71729913|gb|EAO32009.1| PP-loop [Xylella fastidiosa Ann-1]
 gi|167965551|gb|ACA12561.1| cell cycle protein [Xylella fastidiosa M12]
          Length = 435

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/315 (23%), Positives = 115/315 (36%), Gaps = 15/315 (4%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F R       +LVA SGG DS  LL  L S  + R  G     AI + H L E A     
Sbjct: 5   FPRIPDPCVPVLVAFSGGLDSTVLLHCLASQPTQRIHG---LEAIHIHHGLNEHADAWTA 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           + +  C++  I   +     S      + AA          H        +  AH  DDQ
Sbjct: 62  HCAAFCTQHDIRLHIARVHVSHNSGQGLEAAARTARRAAFAHTLQHG-HYLALAHHCDDQ 120

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ET  +R+ R   +   GL+ M     +     + RP L   R  +  +  Q+++ W ED
Sbjct: 121 AETWLLRALRGSCD---GLAAMRPLTPFAAG-HLWRPLLTHTRAQLLDYAQQQHLDWIED 176

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII- 250
            SN D R +R  +R  V  + LH  + +          +  A A L+     V +  ++ 
Sbjct: 177 SSNVDLRHDRNFLRIHVLPL-LHQRWPQATAVLARNAALAAANADLLNAEDAVLLPDLLD 235

Query: 251 ---AISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIG 305
              A+  + L          L  +     G   LP      +ER +L  +     C +  
Sbjct: 236 PDGALDINALTAHPPARRARLLRAWCARAGAPPLPERGVNIIERELLPARHDSAACFTWS 295

Query: 306 RVVIDRRANFLWITR 320
              I R    L++ R
Sbjct: 296 HTEIRRWRLRLYLHR 310


>gi|299533879|ref|ZP_07047246.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni S44]
 gi|298718163|gb|EFI59153.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni S44]
          Length = 336

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/315 (24%), Positives = 120/315 (38%), Gaps = 27/315 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  + VA SGG+DS  LL+A H+    R        AI V H L+  A +  R+   +C
Sbjct: 28  PPLPLAVAFSGGADSSALLLACHARWPGR------VRAIHVHHGLQAAADEFQRHCEQLC 81

Query: 78  SRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL----------IMTAH 126
           +R  IA  V +      Q      AAR+ RYA + + A+                +  A 
Sbjct: 82  ARHGIALKVCAIDARNVQGQSPEDAARQGRYAALIQAARQPWLDAQGAALDAVRSMALAQ 141

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ+ET+ +   R     G+              L   RP L    + +R +L  RN+
Sbjct: 142 HADDQVETLLLALSRGAGVAGLAAM---PGHWQRAGLEWFRPLLEVPGQVLRDWLRLRNL 198

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           SW EDP+N D  + R R+R  +  +           F         A  +L  +     +
Sbjct: 199 SWVEDPTNADPGYTRNRIRAQLLPVLEQVFPQFRSTFARSSAHCAQASQLLDQQAAADLL 258

Query: 247 RSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL----KSGKRGC 301
              +  +   L  +    L  +LR       G  + P    + ++M  L      G R  
Sbjct: 259 LVGVPPAIKALQGLSELRLGNVLRYWLRTEHG--TTPTAAQLAQLMAQLGVCTTRGHRIH 316

Query: 302 VSIGRVVIDRRANFL 316
           + +GR  ++R+   L
Sbjct: 317 IKVGRGFVERQGASL 331


>gi|289166919|ref|YP_003445186.1| MesJ/Ycf62 family protein [Streptococcus mitis B6]
 gi|288906484|emb|CBJ21314.1| MesJ/Ycf62 family protein [Streptococcus mitis B6]
          Length = 425

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/270 (25%), Positives = 115/270 (42%), Gaps = 35/270 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A +++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKVVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRVESDWEEQKLRKLAAEAELPIYISNFSGEFS----EARARHFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN  + + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDISNKKNHYFRNRIRNS----YLPELEKENPRFRDAILSLGNEI------- 214

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
               +   +AI++   NID   L  LL  S
Sbjct: 215 ----LDYDLAIAELSKNIDVENLEQLLSYS 240


>gi|253582314|ref|ZP_04859537.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725]
 gi|251835853|gb|EES64391.1| cell cycle protein MesJ [Fusobacterium varium ATCC 27725]
          Length = 444

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/335 (22%), Positives = 138/335 (41%), Gaps = 30/335 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           ++   +E  R     +V    I+V  SGG DS+ L+  L  +    +F       + ++H
Sbjct: 3   LYREILEKNRK-DNLIVENDKIVVGFSGGPDSVFLVEMLMKLKKSINF---DIVLVHINH 58

Query: 61  CLR-ETAKDEVRYVSDVCSR--LRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAK 115
            LR E +  + ++  +   +  L++    ++      + GL    A R+ARY L  E  +
Sbjct: 59  LLRGENSDGDEKFSLEYGKKKGLQVFSRKINITVLGKKLGLTLEEAGRKARYDLFKEILR 118

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  I  AH  DDQLET   R  R    +G+      + I+   +++I RP     ++
Sbjct: 119 ETGANKIALAHNKDDQLETFMFRLTRGAGLEGL------EGIIAKRDMYI-RPISEIYKK 171

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK----FQDLRVKVN 231
           DI  +L   NIS+  D +N ++ F R  +R  +          K K       +   +VN
Sbjct: 172 DIIKYLNDNNISYRIDETNFENEFTRNSIRLDLIPFIEKRYNPKFKDKLYSLIEEIREVN 231

Query: 232 NAVAMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
             + +   KY+  +  SI  + Q D   +   L+ YL      +            ++ +
Sbjct: 232 RVLEIKFEKYMVNNKLSIEKLKQLDKYLLSKVLIQYLYSYGIEV--------SRNKIQLI 283

Query: 291 MLFLKSGKRGCVSIGR-VVIDRRANFLWITRAVRN 324
              L  G    +S+ R  ++ +  +FL + + ++ 
Sbjct: 284 EDILHKGGSKDISLNREFILKKDYDFLTVEKNIKK 318


>gi|298493031|ref|YP_003723208.1| tRNA(Ile)-lysidine synthetase ['Nostoc azollae' 0708]
 gi|298234949|gb|ADI66085.1| tRNA(Ile)-lysidine synthetase ['Nostoc azollae' 0708]
          Length = 324

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 124/323 (38%), Gaps = 21/323 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I +   F R+      +LVAVSGG DS+     +  +L  +   K   +    DHC RE 
Sbjct: 14  IRARHLFARN----QKLLVAVSGGQDSL---CLIKLLLDLQPKWKWSLAIAHCDHCWRED 66

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++    +V ++         + +  N        A+AR  RY  +++ A+  N   I+T 
Sbjct: 67  SQANAHHVENLAHNWHTPFYLETATNPVKN---EASARNWRYQALTKIAEVHNYQYIVTG 123

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT  D+ ET+     R     G  L  +      + N+ + RP L   R     F  + N
Sbjct: 124 HTASDRAETLLYNLMRGTGADG--LQALTWQRPLNENIILVRPLLEVTRSQTEQFCQEFN 181

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTV 244
           +   +D +N + ++ R R+R+ +          +++         +   V  L      +
Sbjct: 182 LPIWQDSTNQNLQYARNRIRQELIPYLKENFNPQVESNLAQTAELLLAEVEYLEQTAHQL 241

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ------ISLPGYRSMERVMLFLKSGK 298
            + +      DIL ++  +L  +          Q         P +  +E++ + + +  
Sbjct: 242 RLEASEKGENDILQLNRPILKRVPLALQRRVMRQVLQKILPDAPNFEHIEKLRVLITAPN 301

Query: 299 RGCV--SIGRVVIDRRANFLWIT 319
           R       G  +   + ++++I+
Sbjct: 302 RSQTDPFPGGAIAQVQGDWIFIS 324


>gi|83816193|ref|YP_445830.1| tRNA(Ile)-lysidine synthetase [Salinibacter ruber DSM 13855]
 gi|83757587|gb|ABC45700.1| tRNA(Ile)-lysidine synthetase [Salinibacter ruber DSM 13855]
          Length = 468

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 135/399 (33%), Gaps = 30/399 (7%)

Query: 6   IESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +++V  F    +L+    +LVA SGG DSM  L  L  +        +   A+ V++ LR
Sbjct: 6   VDTVAAFSDRHALLDEGPVLVAASGGVDSMTCLSVLRRL-------DVDVHALHVNYGLR 58

Query: 64  ETAKDEVRYVSDVCSRLR--IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
             A  +   V   C      +  SVV+             L AAAR  RY  ++  A  I
Sbjct: 59  AGADGDEALVRRWCHEQSPAVPLSVVALDAEARAASEDESLQAAARRLRYDALAAAAAEI 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A ++ T H  DDQ ET+ +   R    +G+        +  D ++ + RP L  RR+ I
Sbjct: 119 GAPVVATGHHRDDQAETLLLNLVRGSGPEGVAGMRPARPLEADPSVSLVRPLLDARRDAI 178

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++     + W  DP+N    ++R  +R  +                     +   V   
Sbjct: 179 EAYAESMGLPWRTDPTNQRHDYDRGVIRTEILPRLEAHFEGATDALARSADLMQEYVDQA 238

Query: 238 IPKYLT-------VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           +   L            +  A+S + L     +    L + A       +       E +
Sbjct: 239 LRPALKRRMGRAYTDHEAGGALSVEALREAPPVWRRRLLLEALRRALPTAPYSRAVAEEL 298

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL----PTLILYPEETTVWDGRYQFQN 346
              +++     + +G   + R    L             PT I +     +  GR + + 
Sbjct: 299 EALVEAQVGRRMEVGTGTVWRERGRLRFVPDAATPDPLSPTPIDWGTPVAIPQGRLRVEL 358

Query: 347 LSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEG 385
                  +       A   +         AL+  P  EG
Sbjct: 359 CDGRPASLASGPPHLAYADADR----LWTALTVRPWAEG 393


>gi|325917349|ref|ZP_08179566.1| tRNA(Ile)-lysidine synthetase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536436|gb|EGD08215.1| tRNA(Ile)-lysidine synthetase [Xanthomonas vesicatoria ATCC 35937]
          Length = 434

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/359 (23%), Positives = 141/359 (39%), Gaps = 36/359 (10%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             P  +L+A SGG DS  LL AL ++ + R  G     A+ V H L   A     +    
Sbjct: 12  PPPGPVLIAYSGGMDSGVLLHALAALPAYRDRG---LRALHVHHGLHADADAWAAHCQRT 68

Query: 77  CSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C+ L++   +V  + ++    GL AAAR+AR+   +E      A  +  AH  DDQ ET 
Sbjct: 69  CAGLQVPLQIVRVQVARDRGLGLEAAARQARHTAFAEILAP--AEWLALAHHRDDQAETF 126

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +R+ R     G+    +           + RP L   R D++++     + W +DPSNT
Sbjct: 127 LLRALRASGPDGLAAMRIQRPFA---QGILWRPLLAHARADLQAYARLHALHWIDDPSNT 183

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D R++R  +R  V  +                    +A  +L    L        A+  D
Sbjct: 184 DARYDRNFLRTQVLPLLQQRWPQAAAALARSAQLSADASDLLQHDDL--------AVLPD 235

Query: 256 ILNIDSTLLFYLLRVSAAICGGQ-------------ISLPGYRSMERVMLFLKSGKRGCV 302
           +L  +  L  +LLR   A    +             +   G  ++ER +      ++ C 
Sbjct: 236 LLTENGALDLHLLRAQPAARRPRLLRAWAAAAGAPPLPAQGVAALEREIATHAPDRQACF 295

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI-GPQSYR 360
           +  ++ + R  + L++       PT     + +  WDG         + + + GP   R
Sbjct: 296 AWQQIQVRRWRHCLYLLG-----PTPPWPAQWSAHWDGAQPLSLPDGAQLHLHGPAGLR 349


>gi|327314588|ref|YP_004330025.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289]
 gi|326945281|gb|AEA21166.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola F0289]
          Length = 456

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 146/390 (37%), Gaps = 59/390 (15%)

Query: 6   IESVRFFV--RSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  VR F+    L+    + LVA+SGG+DS+ LL+ L  +         +  A+  +  L
Sbjct: 2   LNKVRRFIAFEHLLQADRLYLVALSGGADSVCLLLCLKEL-------GYRIEAVHCNFHL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E ++ + +Y  ++C R  I      +      ++ +  +  AAR  RY    +  +T+
Sbjct: 55  RGEESQRDEQYCQELCVRENIPLHKAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  + T H  +D +ET+ +   R     G+         +      + RP L   R++I
Sbjct: 115 AADAVCTGHHKEDSVETILINLVRGTGLNGL-------MGIRPRKGGVVRPLLCVTRQEI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
             +L  R++S+  D +N  D   R ++R         +      A+        ++   V
Sbjct: 168 EQYLRSRSVSFVTDSTNLVDDVVRNKIRLNILPQLAEINPSVNDAVLTAANHLSEVDAIV 227

Query: 231 NNAVAMLIPKYLT-----------VHMRSIIAISQDILN---IDSTLLFYLLRVSAAICG 276
            +++ M + K +              +     I   ++      + LLF++L+       
Sbjct: 228 RDSLNMALDKAVRPIGSTGPGNSFYPLEHTFKIDLKVVRHFPSPAYLLFHILKPLG---- 283

Query: 277 GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
                P    +  V   L+       +     +    + L +   V   P  ++ PE   
Sbjct: 284 ---FTPS--QIAEVTAHLEGQPGQVWASSTHELTHDRDSLLVMPVVAEKPRELIIPET-- 336

Query: 337 VWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366
              GRY +       I++  ++   A  PS
Sbjct: 337 ---GRYVYD--DGLSIRLTKENRSPASSPS 361


>gi|325856881|ref|ZP_08172379.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A]
 gi|325483254|gb|EGC86231.1| tRNA(Ile)-lysidine synthetase [Prevotella denticola CRIS 18C-A]
          Length = 456

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 29/253 (11%)

Query: 6   IESVRFFV--RSLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  VR F+    L+    + LVA+SGG+DS+ LL+ L  +         +  A+  +  L
Sbjct: 2   LNKVRRFIAFEHLLQADRLYLVALSGGADSVCLLLCLKEL-------GYRIEAVHCNFHL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R E ++ + +Y  ++C R  I      +      ++ +  +  AAR  RY    +  +T+
Sbjct: 55  RGEESQRDEQYCQELCVRENIPLHKAHFDTKTYAAQHKVSIEMAARSLRYRYFFQLKETL 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  + T H  +D +ET+ +   R     G+         +      + RP L   R++I
Sbjct: 115 AADAVCTGHHKEDSVETILINLVRGTGLNGL-------MGIRPRKGGVVRPLLCVTRQEI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
             +L  R++S+  D +N  D   R ++R         +      A+        ++   V
Sbjct: 168 EQYLRSRSVSFVTDSTNLVDDVVRNKIRLNILPQLAEINPSVNDAVLTAANHLSEVDAIV 227

Query: 231 NNAVAMLIPKYLT 243
            +++ M + K + 
Sbjct: 228 RDSLNMALDKAVR 240


>gi|114776817|ref|ZP_01451860.1| PP-loop [Mariprofundus ferrooxydans PV-1]
 gi|114552903|gb|EAU55334.1| PP-loop [Mariprofundus ferrooxydans PV-1]
          Length = 324

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/333 (23%), Positives = 139/333 (41%), Gaps = 20/333 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++P  SV   ++    PA + V  SGG+DS  LL+ L            +  A  VDH 
Sbjct: 1   MITPFNSVAGRMQMDGLPAEVAVGWSGGADSTALLLMLQQ-------QGYRVQAWHVDHG 53

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            RE++  E   +++      I   V        +    A AR+ RYA   + ++    T 
Sbjct: 54  WRESSIKETELLAEKARGWEIELQVARLPAPSGR-NREAEARKGRYAQFEQWSEATGITT 112

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +   H  DDQ ETV MR  +     G    GM     +   L I RP L+ +  ++++ L
Sbjct: 113 LCLGHHRDDQAETVCMRMLQGAGISGC--RGMQQRRRHGR-LDIFRPLLQVKAGELKAAL 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVA 235
              +I+W EDPSN D    R R+R+ +        +    L+L+ +   +   +  ++ A
Sbjct: 170 RAADINWLEDPSNNDMTIWRNRIRQGLFPAMQRAGVSPSELFLRWQVQAERLGQQIDSEA 229

Query: 236 MLIPKYLTVHMRSIIAISQDIL---NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            L+   +++  + + + S   L      + +   +L+   A   G+   PG R +  +  
Sbjct: 230 QLLLGDISLRNQGVRSASVPWLIWSATAAPIRVRMLQKMMAFVLGEGVTPGRRHILMIEA 289

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL 325
           + + G  G + + R  + R    L + R   +L
Sbjct: 290 WTQRGGHGGLDLSRCRLLRSRKDLHLRRTAADL 322


>gi|260062776|ref|YP_003195856.1| putative cell-cycle protein [Robiginitalea biformata HTCC2501]
 gi|88784344|gb|EAR15514.1| putative cell-cycle protein [Robiginitalea biformata HTCC2501]
          Length = 439

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 24/308 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSD 75
           +  +  L+A SGG DSM L               ++F     +  LR  A + +  +V +
Sbjct: 16  LMGSSFLLACSGGLDSMVLAHLCKD-------AGLEFELAHCNFNLRGEASESDQEFVRE 68

Query: 76  VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEH-AKTINATLIMTAHTFDD 130
              +LRI   + S+      ++ +  +  AAR  RY    +  A   +   I+TAH  DD
Sbjct: 69  TADKLRIKTHIKSFDTIGYANQNKVSIQMAARALRYEWFDQLTASENHLRYIVTAHHADD 128

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET  +   R    +G+         +      I RP L   RED+ ++     I+W E
Sbjct: 129 ALETFLINLGRGSGLEGL-------CGIPARTANIRRPLLAFSREDLEAYAETARIAWRE 181

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN++ R+ R R+R  V      A    + +F +    ++ + A LI +Y+    R + 
Sbjct: 182 DASNSETRYLRNRLRHEVIPALKAASGGFLDQFGNSVRHLDGSRA-LIERYMDGVFRKVS 240

Query: 251 AISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
             S  +L      L  L    A +           ++++ R++   ++G+       R++
Sbjct: 241 RESDGVLVFSIPALRALHPREAHLHELFRDYGFTDWKALGRLLE-SETGREVQSPTHRLL 299

Query: 309 IDRRANFL 316
             R    L
Sbjct: 300 KHRDELLL 307


>gi|82702932|ref|YP_412498.1| hypothetical protein Nmul_A1809 [Nitrosospira multiformis ATCC
           25196]
 gi|82410997|gb|ABB75106.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 472

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 125/347 (36%), Gaps = 31/347 (8%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            +    H+ +A+SGG      ++ L  ++   S  ++  SA+ V+H +   A     +  
Sbjct: 23  QVPAGDHLTIALSGGV---DSVVLLDLLVPLASQMQLPLSAVHVNHGISPNADKWSEFCR 79

Query: 75  DVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           ++C    I   +   K ++ P   L AAARE RY +     + +    I+ A   DDQ E
Sbjct: 80  NLCQFRNIPLEIARVKVAQGPGISLEAAAREERYRIF----RGLQTDYIVLAQHLDDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN--------------LWISRPFLRCRREDIRS 179
           T+ ++  R    KG+    +  T+  ++                 + RP L   R +I  
Sbjct: 136 TLLLQLLRGAGVKGLSAMPVVRTVRKEMGETVPVNSVPALEGRPRLLRPLLDVSRREIED 195

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +  +  + W  D SN +  F R  +R  +  +           F      +  A A+L  
Sbjct: 196 YARKHALRWITDESNDEISFGRNFLRHELFPLMEKRFPAYRTTFLRASRHMAEASALLDE 255

Query: 240 KYLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK- 295
                  R  +      +D+  +       LLR + A     + LP    +E ++  L  
Sbjct: 256 LAEVDSARCAVPGKLHVEDLRKLGFPRARNLLRYTLA--QHAVVLPSTVKLEEILRQLVS 313

Query: 296 --SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340
             S  +  V  G   I      + I R  + +   I        W G
Sbjct: 314 SYSDTKLHVVFGNTEIRCFRGRVHI-RKAQTIVEAIPEARWHLPWRG 359


>gi|42518368|ref|NP_964298.1| hypothetical protein LJ0281 [Lactobacillus johnsonii NCC 533]
 gi|61216579|sp|Q74LA3|TILS_LACJO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|41582653|gb|AAS08264.1| hypothetical protein LJ_0281 [Lactobacillus johnsonii NCC 533]
          Length = 431

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 10/227 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+A SGG DS+ LL  L + L + S    +     +DHCLR+ +  E + +  +
Sbjct: 15  IKNKKFLLAASGGPDSVALLKMLVNFLPNPSE---QLIVAHLDHCLRDDSFLESQLLQRL 71

Query: 77  CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            S L++      W     PQ G+ A ARE RYA +++  +      ++TAH  DD +E +
Sbjct: 72  TSALKVKLVEKKWPVELHPQAGVEAKAREYRYAFLAKVGRKYQTDYLLTAHHGDDLIENI 131

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R      M    +   +    ++ + RP ++  ++++  +    ++ + ED +N 
Sbjct: 132 LLKFIRSGDVAEMNSLQIVGNL---GSMKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNF 188

Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +D   R R+R  V  +   +   L      F +    ++   + L  
Sbjct: 189 EDDTLRNRLRHHVVPLLKKETSHLVKNANHFSESVALLSKCQSDLFD 235


>gi|187777491|ref|ZP_02993964.1| hypothetical protein CLOSPO_01066 [Clostridium sporogenes ATCC
           15579]
 gi|187774419|gb|EDU38221.1| hypothetical protein CLOSPO_01066 [Clostridium sporogenes ATCC
           15579]
          Length = 468

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 126/323 (39%), Gaps = 23/323 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLR-ETAKDEVRYVSDVC 77
             I+V VSGG DSM     LH +   +   +IK      ++H +R   +  + +YV + C
Sbjct: 19  DKIIVGVSGGPDSM---CLLHMLCLLKDELRIKDIYVAHINHGVRGAESDADEKYVENFC 75

Query: 78  SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               +     +        +      +A REARY   +   K + A  I TAH  +DQ E
Sbjct: 76  YMNNLGFFSKTIDMNKMAKEKGISSESAGREARYDFFNYLRKELGAQKIATAHNANDQAE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR  R     G GL G+         ++I RP +   RE+I  +  +  ++   D +
Sbjct: 136 TVLMRIMR-----GTGLQGLIGINPIRDGVYI-RPLINVLRENIEYYCEKYKLNPRIDKT 189

Query: 194 NTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH---M 246
           N    + R ++R     +++D     +   + +F ++  K N+ +  +      ++    
Sbjct: 190 NLQSIYTRNKIRLELIPYIKDNFNEDIVNTLCRFSNIVSKDNSYLEEVSKDKFQIYCTKK 249

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM-LFLKSGKRGCVSIG 305
              + I +       ++   +LR         +     +++  ++ L L +  +      
Sbjct: 250 TQRVIIDKRAFLEHESISTRILREVILYINKNLYNLEMKNIYDILELSLNTTGKFINLPN 309

Query: 306 RVVIDRRANFLWITRAVRNLPTL 328
            +  +     + + +   ++  +
Sbjct: 310 NIRAENIYGDIHLYKECNDINEI 332


>gi|326402603|ref|YP_004282684.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301]
 gi|325049464|dbj|BAJ79802.1| tRNA(Ile)-lysidine synthetase [Acidiphilium multivorum AIU301]
          Length = 389

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 103/379 (27%), Positives = 155/379 (40%), Gaps = 38/379 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + V VSGG+DSM L +   S   +R    +   A   DH LR  + DE        + L
Sbjct: 12  RVAVGVSGGADSMALTLLAASWARERGGDCLGLIA---DHGLRPVSADEASLTGRRLAAL 68

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I + ++  +   P   L A AR+AR+A ++  A+      ++  H   DQ E   MR+ 
Sbjct: 69  GIGYRILRLQLG-PGPALQARARDARHASLAAAARGAGIVHLLLGHHAGDQDELRAMRAA 127

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R       GL+GM      D ++ I RP L      +R FL  R I W EDPSN D RFE
Sbjct: 128 RGP----RGLAGMAGFAARD-DIVILRPLLGTDPAVLREFLSGRGIGWVEDPSNADARFE 182

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           RVRVR   R   L    L      D R      VA ++ + +++       +    L ++
Sbjct: 183 RVRVRATRRQAALVPPSLD----ADRRAAAERDVAEILVRDVSLRPEGWAIVRAASLPVE 238

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI---DRRANFLW 317
           +      L V   + GG    P   ++ER+   L+       ++G V I    R      
Sbjct: 239 A------LAVLFRVLGGAAYPPARAALERLAPELRPA-----TLGGVRIMAAGRHGPGWL 287

Query: 318 ITRAVRNLPTLILYPEETTVWDGRYQFQN----------LSDSLIQIGPQSYRKADVPSG 367
           + R         +      VWDGR++ ++          L DS  +IG +S   A +   
Sbjct: 288 LVREAAAC-APPVAAVRGAVWDGRFRVRDVPPGARTIGALGDSAAEIGRRSGLPAALRRT 346

Query: 368 IPPIIAQRALSSMPSKEGG 386
           +P       + S+P   GG
Sbjct: 347 LPAFFGGDGVLSVPHLAGG 365


>gi|213969135|ref|ZP_03397274.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato T1]
 gi|213926133|gb|EEB59689.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato T1]
          Length = 455

 Score =  187 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 111/325 (34%), Gaps = 20/325 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    +       AI V H L+  A     +   VC  L +A
Sbjct: 40  VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 97

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  K  +P   +  AAR+ARYA  +E  +     +++T    DDQ ET+  R  R  
Sbjct: 98  FESVRVKV-EPDASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 154

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 155 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 211

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L          +        L +    
Sbjct: 212 LRSQVLPLLTSRWPHATASLARTAGHLGEAQQLLDELAAQDVANAQATTPFSWLGLPVLN 271

Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  + R+S A               LP          +       R    +    + R  
Sbjct: 272 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 331

Query: 314 NFLWITRA--VRNLPTLILYPEETT 336
             +W   A   R     + + +  T
Sbjct: 332 GCIWWLPAGWERTCSEAVNWADPHT 356


>gi|322412927|gb|EFY03834.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 428

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 112/283 (39%), Gaps = 21/283 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+AVSGG DSM LL  LH    +    +I      ++H  R  ++ E  Y+    +
Sbjct: 20  HRRVLIAVSGGVDSMNLLHFLHLFQENL---QISIGIAHINHKQRIESEIEEDYLRQWAN 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              +   +  ++     T    AAR+ RY    +  +    + ++TAH  DDQ ET+ MR
Sbjct: 77  NHSVPIYISHFE----GTFSEKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   ++D+       NI   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKPVQPFG-NGQLIRPFLPFSKDDLP------NIFHFEDTSNEETT 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             R RVR       L  L  +  +      ++     +L   +  +  +  I    +   
Sbjct: 184 VFRNRVRNQ----YLPLLEKENPQLVQSLNQLAIENQLLFQAFTELTTKITITHLAEFRA 239

Query: 259 IDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +++ ++LL+         Q+    +  +  ++   K G   
Sbjct: 240 QTASVQYFLLQDYLENFPDLQLKKSQFNQLLHLLQKAKQGNYP 282


>gi|227509310|ref|ZP_03939359.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191240|gb|EEI71307.1| tRNA(Ile)-lysidine synthetase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 478

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 8/218 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++VAVS G DSM LL  L  +         +     VDHCLRE +K E  ++   CS
Sbjct: 30  DQPVVVAVSTGIDSMTLLYLLEHL----DQCSPQIIVAYVDHCLREQSKRETVFIQQYCS 85

Query: 79  RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              +      W   + PQ G+ AAARE RY       K   AT+++TAH  DD  ET+ M
Sbjct: 86  DHHLKLVQAVWNRKQHPQHGIEAAAREFRYRFFRRVLKENQATVLLTAHHGDDLAETMLM 145

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R    +   L G+ +         + RP L   +++I  F    +I W ED +N D 
Sbjct: 146 KLVRGGQIE--SLIGIAEQRPTSFG-SVVRPLLHFSKKEIHQFASSVHIKWFEDETNRDL 202

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
             +R R R  +           +K F D   ++   + 
Sbjct: 203 TIQRNRFRHQIVPKMKQENPRMLKHFVDYSKQLKTLIE 240


>gi|28868757|ref|NP_791376.1| cell cycle protein mesJ [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851996|gb|AAO55071.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 455

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 106/308 (34%), Gaps = 18/308 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    +       AI V H L+  A     +   VC  L +A
Sbjct: 40  VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 97

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  K  +P   +  AAR+ARYA  +E  +     +++T    DDQ ET+  R  R  
Sbjct: 98  FESVRVKV-EPGASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 154

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 155 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 211

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L          +        L +    
Sbjct: 212 LRSQVLPLLTSIWPHATASLARTAGHLGEAQQLLDELAAQDVANAQATTPFSWLGLPVLN 271

Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  + R+S A               LP          +       R    +    + R  
Sbjct: 272 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 331

Query: 314 NFLWITRA 321
             +W   A
Sbjct: 332 GCIWWLPA 339


>gi|261880480|ref|ZP_06006907.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella bergensis DSM 17361]
 gi|270332819|gb|EFA43605.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Prevotella bergensis DSM 17361]
          Length = 455

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 128/328 (39%), Gaps = 40/328 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLR 81
           LVA+SGG+DS+ LL  L  +            A+  +  LR   +  +  +   +C ++ 
Sbjct: 24  LVALSGGADSVALLCVLKRL-------GYHIEAVHCNFHLRGKESMRDEDFCVALCEKMN 76

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    + +      +  Q  +  AARE RY    +  K ++A  I  AH  DDQ+ETV +
Sbjct: 77  MTLHRIHFDTTTYATLHQISIEMAARELRYGYFEQLRKDLSADDICVAHHRDDQVETVLL 136

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G GL G+      + N  + RP L   R+++ S+L      +  D SN  +
Sbjct: 137 NLVR-----GTGLVGLQGMKPRNGN--VVRPMLAVSRDEVESYLNSIEQDYVTDSSNLIN 189

Query: 198 RFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
              R ++R  +  + L  L   +K    +  +   + N  +   +   + +  R  ++  
Sbjct: 190 DVMRNKLRLDIIPL-LEELNPSVKASVFRMTENLGEANKLMDEALQNNIALIRRDNMSYD 248

Query: 254 QDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR--VV 308
              L      S +L+ +L                  M  ++     G+ G    G    V
Sbjct: 249 LKTLRKLVSPSYVLWSVL---------NKYGFNRSQMFEILSH--EGRAGQWETGEYVAV 297

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETT 336
            DR    ++  ++    P+++  PEE  
Sbjct: 298 ADRERLDIFTAKSWAFKPSVLRIPEEGV 325


>gi|15902054|ref|NP_357604.1| hypothetical protein spr0010 [Streptococcus pneumoniae R6]
 gi|116516781|ref|YP_815434.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae D39]
 gi|61217356|sp|Q8DRP9|TILS_STRR6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|122279568|sp|Q04N53|TILS_STRP2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|15457538|gb|AAK98814.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077357|gb|ABJ55077.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae D39]
          Length = 425

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 128/317 (40%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET++MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETIFMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++ F    +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKFKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|289522999|ref|ZP_06439853.1| tRNA(Ile)-lysidine synthase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503542|gb|EFD24706.1| tRNA(Ile)-lysidine synthase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 469

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 108/302 (35%), Gaps = 29/302 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           ++  +SGG DS+ LL  L ++   +            +H +R   + ++  +V D+    
Sbjct: 39  VVAGISGGPDSVALLWMLVNLWRGK------VIVAHFEHGIRGRESIEDAVFVRDLAFNF 92

Query: 81  RIAHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +    + S    +  +   G+  AAR  RY  + +      A  I   H  DD +ETV  
Sbjct: 93  QCPFFMESVPVPQLRQKGEGIEEAARRLRYEFLEKIRSENKAAYIAVGHHNDDLVETVIF 152

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +G+         + +   +I RP +   R +I   L   +I+W ED +N D 
Sbjct: 153 NVIRGTGLRGL-------QGIPEKRGYIVRPLIDFTRREITDLLEGLSINWREDSTNVDV 205

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R ++R  +  +       K++K      +     A L+       +  ++ I     
Sbjct: 206 NYARNKIRLQLIPLLEREYNPKIRKHIAFLSRQAFETANLLENEAAK-INGLVGIKPLPY 264

Query: 258 NI---DSTLLFYL----LRVSAAICGGQISLP----GYRSMERVMLFLKSGKRGCVSIGR 306
                D   L  L    L+++  +   Q  L          E ++  +K           
Sbjct: 265 TKALWDRKALRSLNLPALQITECLRRQQRDLHLTTLSSDRTELLLKLIKDKINWRFQWEG 324

Query: 307 VV 308
            V
Sbjct: 325 KV 326


>gi|268318837|ref|YP_003292493.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785]
 gi|262397212|emb|CAX66226.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii FI9785]
          Length = 431

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+A SGG DS+ LL  L + L + S    +     +DHCLR+ +  E + +  +
Sbjct: 15  IKNKKFLLAASGGPDSVALLKMLVNFLPNPSE---QLIVAHLDHCLRDDSFLESQLLQRL 71

Query: 77  CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            S L++      W     PQ G+ A ARE RYA ++E  +      ++TAH  DD +E +
Sbjct: 72  TSALKVKLVEKKWPVELHPQAGVEAKAREYRYAFLAEVGRKYQTDYLLTAHHGDDLIENI 131

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R      M    +   +    ++ + RP ++  ++++  +    ++ + ED +N 
Sbjct: 132 LLKFIRSGDVAEMNSLQIVGNL---GSMKLLRPLVKYSKDELLKYDEDHHLDFIEDKTNF 188

Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +D   R R+R  V  +   D   L      F +    ++   +    
Sbjct: 189 EDDTLRNRLRHHVVPLLKKDTTHLVKNANHFSESVALLSKCQSDFFD 235


>gi|168576121|ref|ZP_02722026.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae MLV-016]
 gi|183578020|gb|EDT98548.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae MLV-016]
          Length = 425

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|294507733|ref|YP_003571791.1| cell cycle protein MesJ [Salinibacter ruber M8]
 gi|294344061|emb|CBH24839.1| cell cycle protein MesJ [Salinibacter ruber M8]
          Length = 468

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 130/380 (34%), Gaps = 26/380 (6%)

Query: 6   IESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +++V  F    +L+    +LVA SGG DSM  L  L  + +D         A+ V++ LR
Sbjct: 6   VDTVAAFSDRHALLDEGPVLVAASGGVDSMTCLSVLRRLDAD-------VHALHVNYGLR 58

Query: 64  ETAKDEVRYVSDVCSRLR--IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
             A  +   V   C      +  SVV+             L AAAR  RY  ++  A  I
Sbjct: 59  AGADGDEALVRRWCQEQSPAVPLSVVALDAEARAASEDESLQAAARRLRYDALAAAAAEI 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A ++ T H  DDQ ET+ +   R    +G+        +  D ++ + RP L  RR+ I
Sbjct: 119 GAPVVATGHHRDDQAETLLLNLVRGSGPEGVAGMRPARPLEADPSVSLVRPLLDARRDAI 178

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++     + W  DP+N    ++R  +R  +                     +   V   
Sbjct: 179 EAYAESMGLPWRTDPTNQRHDYDRGVIRTEILPRLEAHFEGATDALARSADLMQEYVDQA 238

Query: 238 IPKYLT-------VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           +   L            +  A+S + L     +    L + A       +       E +
Sbjct: 239 LRPALKRRMGRAYTDHEAGGALSVEALREAPPVWRRRLLLEALRRALPTAPYSRAVAEEL 298

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNL----PTLILYPEETTVWDGRYQFQN 346
              +++     + +G   + R    L             PT I +     +  GR + + 
Sbjct: 299 EALVEAQVGRRMEVGAGTVWRERGRLRFVPDAATPDPLSPTPIDWGTPVAIPQGRLRVEL 358

Query: 347 LSDSLIQIGPQSYRKADVPS 366
                  +       A   +
Sbjct: 359 CDGRPASLASGPPHLAYADA 378


>gi|227522408|ref|ZP_03952457.1| tRNA(Ile)-lysidine synthetase [Lactobacillus hilgardii ATCC 8290]
 gi|227090466|gb|EEI25778.1| tRNA(Ile)-lysidine synthetase [Lactobacillus hilgardii ATCC 8290]
          Length = 478

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 96/218 (44%), Gaps = 8/218 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++VAVS G DSM LL  L   L  RS    +     VDHCLRE +K E  ++   CS
Sbjct: 30  DQPVVVAVSTGIDSMTLLYLL-EHLDQRS---PQIIVAYVDHCLREQSKRETVFIQQYCS 85

Query: 79  RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              +      W   + PQ G+ AAARE RY       K   AT+++TAH  DD  ET+ M
Sbjct: 86  DHHLKLVQAVWNRKQHPQHGIEAAAREFRYRFFRRVLKENQATVLLTAHHGDDLAETMLM 145

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R    +   L G+ +         + RP L   +++I  F    +I W ED +N D 
Sbjct: 146 KLVRGGQVE--SLIGIAEQRPTSFG-SVVRPLLHFSKKEIHQFASSVHIKWFEDETNLDL 202

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
             +R R R  +           ++ F D   ++   + 
Sbjct: 203 TIQRNRFRHQIVPKMKQENPRMLRHFVDYSKQLKTLIE 240


>gi|76788050|ref|YP_328740.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae A909]
 gi|77405606|ref|ZP_00782695.1| MesJ/Ycf62 family protein [Streptococcus agalactiae H36B]
 gi|76563107|gb|ABA45691.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae A909]
 gi|77175750|gb|EAO78530.1| MesJ/Ycf62 family protein [Streptococcus agalactiae H36B]
          Length = 424

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 20/251 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+AVSGG DS+ LL  L+    + S   I      ++H  R+ ++ E  Y+    
Sbjct: 17  AHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIRQWG 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               +   +  ++           AR  RY   S+  +    T ++TAH  DDQ ETV+M
Sbjct: 74  QIHDVPVFISYFQGIFS----EDRARNHRYNFFSKVMREEGYTALVTAHHADDQAETVFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   LSG+     +  N  + RPFL  ++E +       NI   ED SN   
Sbjct: 130 RILRGSRLRY--LSGIKQVSAFA-NGQLIRPFLPYKKELLP------NIFHFEDASNASS 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R     +   AL  +  + +D  + ++     L      +     +    D L
Sbjct: 181 DYLRNRIRN----VYFPALERENNQLKDSLITLSEETECLFTALTDLTRSIEVTNCYDFL 236

Query: 258 NIDSTLLFYLL 268
               ++  +LL
Sbjct: 237 RQTHSVQEFLL 247


>gi|22536199|ref|NP_687050.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 2603V/R]
 gi|25010088|ref|NP_734483.1| hypothetical protein gbs0013 [Streptococcus agalactiae NEM316]
 gi|76797982|ref|ZP_00780241.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 18RS21]
 gi|77414471|ref|ZP_00790621.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 515]
 gi|61217360|sp|Q8E2H4|TILS_STRA5 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61217362|sp|Q8E7Y2|TILS_STRA3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|22533016|gb|AAM98922.1|AE014191_14 MesJ/Ycf62 family protein [Streptococcus agalactiae 2603V/R]
 gi|23094439|emb|CAD45658.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586662|gb|EAO63161.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 18RS21]
 gi|77159481|gb|EAO70642.1| MesJ/Ycf62 family protein [Streptococcus agalactiae 515]
          Length = 424

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 20/251 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+AVSGG DS+ LL  L+    + S   I      ++H  R+ ++ E  Y+    
Sbjct: 17  AHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIRQWG 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               +   +  ++           AR  RY   S+  +    T ++TAH  DDQ ETV+M
Sbjct: 74  QIHDVPVFISYFQGIFS----EDRARNHRYNFFSKVMREEGYTALVTAHHADDQAETVFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   LSG+     +  N  + RPFL  ++E +       NI   ED SN   
Sbjct: 130 RILRGSRLRY--LSGIKQVSAFA-NGQLIRPFLPYKKELLP------NIFHFEDASNASS 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R     +   AL  +  + +D  + ++     L      +     +    D L
Sbjct: 181 DYLRNRIRN----VYFPALERENNQLKDSLITLSEETECLFTALTDLTRSIEVTNCYDFL 236

Query: 258 NIDSTLLFYLL 268
               ++  +LL
Sbjct: 237 RQTHSVQEFLL 247


>gi|77411309|ref|ZP_00787658.1| MesJ/Ycf62 family protein [Streptococcus agalactiae CJB111]
 gi|77162645|gb|EAO73607.1| MesJ/Ycf62 family protein [Streptococcus agalactiae CJB111]
          Length = 424

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 20/251 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+AVSGG DS+ LL  L+    + S   I      ++H  R+ ++ E  Y+    
Sbjct: 17  AHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIRQWG 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               +   +  ++           AR  RY   S+  +    T ++TAH  DDQ ETV+M
Sbjct: 74  QIHDVPVFISYFQGIFS----EDRARNHRYNFFSKVMREEGYTALVTAHHADDQAETVFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   LSG+     +  N  + RPFL  ++E +       NI   ED SN   
Sbjct: 130 RILRGSRLRY--LSGIKQVSAFA-NGQLIRPFLPYKKELLP------NIFHFEDASNASS 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R     +   AL  +  + +D  + ++     L      +     +    D L
Sbjct: 181 DYLRNRIRN----VYFPALERENNQLKDSLITLSEETECLFTALTDLTRSIEVTNCYDFL 236

Query: 258 NIDSTLLFYLL 268
               ++  +LL
Sbjct: 237 RQTHSVQEFLL 247


>gi|329666677|gb|AEB92625.1| tRNA(Ile)-lysidine synthase [Lactobacillus johnsonii DPC 6026]
          Length = 431

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+A SGG DS+ LL  L + L + S    +     +DHCLR+ +  E + +  +
Sbjct: 15  IKNKKFLLAASGGPDSVALLKMLVNFLPNPSE---QLIVAHLDHCLRDDSFLESQLLQRL 71

Query: 77  CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            S L++      W     PQ G+ A ARE RYA +++  +      ++TAH  DD +E +
Sbjct: 72  TSALKVKLVEKKWPVELHPQAGVEAKAREYRYAFLAKVGREYQTDYLLTAHHGDDLIENI 131

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R      M    +   +    ++ + RP ++  ++++  +    ++ + ED +N 
Sbjct: 132 LLKFIRSGDVAEMNSLQIVGNL---GSMKLLRPLVKYSKDELLKYDKDHHLDFIEDKTNF 188

Query: 196 DDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +D   R R+R  V  +   +   L      F +    ++   +    
Sbjct: 189 EDDTLRNRLRHHVVPLLKKETSHLVKNANHFSESVALLSKCQSDFFD 235


>gi|221230959|ref|YP_002510111.1| ATP-binding PP-loop family protein [Streptococcus pneumoniae ATCC
           700669]
 gi|254789050|sp|B8ZJI9|TILS_STRPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|220673419|emb|CAR67877.1| putative ATP-binding PP-loop family protein [Streptococcus
           pneumoniae ATCC 700669]
          Length = 425

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 127/317 (40%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +   + +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNTNVENLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|317060743|ref|ZP_07925228.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. D12]
 gi|313686419|gb|EFS23254.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. D12]
          Length = 446

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 117/323 (36%), Gaps = 28/323 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RY 72
           + +     ILVA SGG DS+ L+  L  +    SF  +    + + H +R+ A +E   +
Sbjct: 16  QYIQEGDRILVAFSGGPDSVFLVEMLLKLQEQLSFQML---LLHLHHMIRQEAAEEDYLF 72

Query: 73  VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             D   +  +        V     K    L  A R  RY    +  K      I TAH  
Sbjct: 73  CLDYAKKKNLEIIARKMDVPSYAKKEGQSLEEAGRILRYQFFYQIQKQRAYHKIATAHHL 132

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD LET + R  R  + +G  L+G+             RP     + +I S+L +  I++
Sbjct: 133 DDHLETFFFRLLRGSSMEG--LAGISRKQADK-----IRPLRDFEKAEILSYLERHQIAY 185

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           C+D +N +  + R R+R  +    L  L     K+++        +     +   +  ++
Sbjct: 186 CKDKTNEETEYSRNRIRLEL----LPQLKSYNPKWKEKVASFMEELEERKEEEEGIDWKA 241

Query: 249 IIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
                 IS   L  +       +     +          + + ++   L+ G      + 
Sbjct: 242 YWKEGFISVTKLQKEKPYFRKKILYKYLLSKQI--PINRKQIHQIFTLLEKGGSLSYDLK 299

Query: 306 RVV-IDRRANFLWIT---RAVRN 324
                 +  + +W+    +  RN
Sbjct: 300 NFWKFKKEYDRIWVESLQKEERN 322


>gi|307565061|ref|ZP_07627574.1| tRNA(Ile)-lysidine synthetase [Prevotella amnii CRIS 21A-A]
 gi|307346230|gb|EFN91554.1| tRNA(Ile)-lysidine synthetase [Prevotella amnii CRIS 21A-A]
          Length = 456

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 58/257 (22%), Positives = 110/257 (42%), Gaps = 29/257 (11%)

Query: 6   IESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  V+ F+   + L      LVA+SGG+DS+ LL+ LH +         K +A+  +  L
Sbjct: 2   LNKVKKFIAKYQLLNKEKCYLVALSGGADSVSLLLILHQL-------GYKINAVHCNFKL 54

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTI 117
           R E +  + ++  D+C+R  I    + +  ++     +  +  AARE RY    +  K+I
Sbjct: 55  RGEESYRDEQFCIDLCNRHDIPLKRIHFDTTEYASLRKISIEMAARELRYTYFEQLRKSI 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           NA  +   H  +D +ET+ +   R     G+       T +   N  + RP L C R+DI
Sbjct: 115 NAEGVCVGHHQEDSVETILLNLTRGTGIHGL-------TGIAPRNGNVIRPLLSCTRKDI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKV 230
            +F++     +  D SN      R ++R       + +      ++    +   +     
Sbjct: 168 ETFIIGEGEHYVTDSSNLVSNVVRNKLRLLVIPLLKEINPSVQASIAQTAQYLSEAGTVA 227

Query: 231 NNAVAMLIPKYLTVHMR 247
           ++A+     K+   H +
Sbjct: 228 DDALLRYFDKFGISHSK 244


>gi|258510216|ref|YP_003183650.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476942|gb|ACV57261.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 475

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/303 (23%), Positives = 117/303 (38%), Gaps = 17/303 (5%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           + FF +  +  AH ++ VSGG DSM LL        +       FS + V H LRETA  
Sbjct: 12  ISFFQQHRLETAHAVLGVSGGVDSMVLLHLCQRAAEEAPSALGGFSVVHVHHHLRETADR 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           +  +V   C    I   +   K    +   + AA              +   +I+ AH  
Sbjct: 72  DAAFVERYCREREIPCEIAHVKVVDERGEGLEAAARRARYQALADRARVKGGVILVAHHA 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D+LET  MR  R     G+G       +     + + RP L   + +I  +     +  
Sbjct: 132 QDELETFIMRLLRGAGPGGLGAMRPEAEM---NGVRVLRPLLAVEKSEIERYAALHGVPH 188

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMR 247
            ED +N D RF R RVR+ V    + AL     + ++   KV  A+ +L  +   +  + 
Sbjct: 189 VEDETNEDPRFFRNRVRQVV----IPALRAVEPRAEE---KVRQALELLWAEDAYMRELA 241

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
              A    +   D  + F   R+      G++ +   R +  ++L   S +   ++    
Sbjct: 242 CEAARRVAVCGADGRIAFSASRL------GELHVSLQRRVIHILLNCFSAREWTLAHVEA 295

Query: 308 VID 310
           V  
Sbjct: 296 VRR 298


>gi|167518720|ref|XP_001743700.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777662|gb|EDQ91278.1| predicted protein [Monosiga brevicollis MX1]
          Length = 475

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 99/465 (21%), Positives = 166/465 (35%), Gaps = 64/465 (13%)

Query: 16  LVYPAHILVAVSGGSD---------------------------SMGLLIALHSVLSDRSF 48
           L    ++LVAVSGG D                           SM L+ ALH     R  
Sbjct: 18  LQDARNLLVAVSGGPDRCEWDDATSMATCAMCWLIGHAPACICSMALVHALHQQQPGRVR 77

Query: 49  GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH--SVVSWKNSKPQTGLMAAAREAR 106
             +      VDH LR  + DE   V     R  I    S + W  + P++   A AR  R
Sbjct: 78  AHL------VDHRLRPESTDEAHQVMSELQRHSIVCGMSTLQW-AAAPRSNTQALARTER 130

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLW- 164
           Y  +   A       I+TAH  DDQ+ET+ MR        G +G+            L  
Sbjct: 131 YNALVAAAHQHGCQAILTAHHADDQVETILMRICNLSGLVGALGIRARAHWRSERHGLQA 190

Query: 165 -ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR------DIDLHALY 217
            ++RP L   + D+  +    ++    D SN  D++ER R+R  +          L  +Y
Sbjct: 191 PLARPLLHLTKADLVQYCQTNDVRTVNDCSNDSDKYERNRLRFALAARQQQTPDTLGEMY 250

Query: 218 LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG- 276
              + +  LR+++      L    L   +   I   +  L   +     ++ ++A +   
Sbjct: 251 ALAENWTVLRLELEGEARELAQSALHHDVHPQIWSIESKLVARAPRAVQIVLITACLVAV 310

Query: 277 GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN----FLWITRAVRNLPTLILYP 332
                P  R +E ++  L+  +     +G V  +R+ +     LW +    +   L +  
Sbjct: 311 SGGRQPDPRQVEALVSTLEQSQPVRGQVGVVSFERQGSNHALHLWRSPLRADFEPLTIQS 370

Query: 333 EETT--VWDGRY------QFQNLSDSLIQIGPQS--YRKADVPSGIPPIIAQRALSSMPS 382
                  WDGR+      Q     +S  ++ P +  +++     G    +     +  P 
Sbjct: 371 PTPAAWYWDGRFRCHPALQATARPESAFRLVPLTARWQQHLSQQGAWHHLKSAIRACPPQ 430

Query: 383 KEGGKPLL----APFSRFMTKFDLPVAYAFSISFGKVFIPRLPFF 423
             G +PLL    +P         LP  +   +       P LP+ 
Sbjct: 431 LRGSQPLLLMQTSPLDSEWKPAGLPTLHPHELLAADYDPPPLPWL 475


>gi|126656632|ref|ZP_01727846.1| hypothetical protein CY0110_23376 [Cyanothece sp. CCY0110]
 gi|126621852|gb|EAZ92560.1| hypothetical protein CY0110_23376 [Cyanothece sp. CCY0110]
          Length = 323

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 22/327 (6%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M+ S    V   ++    L + ++IL+AVSGG DS+ LL  +  + S   +   K +   
Sbjct: 5   MWTSLHAKVHQTLKDSLILPHQSNILIAVSGGQDSLCLLKLIVDLQSKWGW---KIAIGH 61

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            DH    +      +V ++     I   +   +  K      AAARE RY  + E A   
Sbjct: 62  CDHGW-ASDIGIADHVRELAYHWNIPFYLKVAEAMKET---EAAAREWRYQSLVEIANKN 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             T ++T HT  D+ ET+     R    KG+G   +         + + RP L+  R + 
Sbjct: 118 EFTEVVTGHTLSDRAETLLYNLIRGSGSKGLGS--LTWKRPLSNKISLVRPLLKVSRPET 175

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNA 233
            +F  Q ++   ED  N +  + R R+R+     ++D     +   + +  ++    ++ 
Sbjct: 176 LAFCQQFDLPIWEDAVNANLDYARNRIRQQLLPYLKDHFNPNVESTLSQTSEVLKTESDY 235

Query: 234 VA-MLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
           +        +     S   +++DIL  I   L   ++R         I  P +  +E  +
Sbjct: 236 LESEANKILIASFNNSKQQLNRDILKPIPLALQRRVIRQFLEKI--IIRKPNFEQIEETV 293

Query: 292 LFLKSGKRGCVSI--GRVVIDRRANFL 316
             + + +R   S   G ++++   N++
Sbjct: 294 NLINAPRRSRTSSFPGNIILEVEENYI 320


>gi|148997947|ref|ZP_01825460.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|168491781|ref|ZP_02715924.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|169834329|ref|YP_001693445.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|307066647|ref|YP_003875613.1| putative ATPase [Streptococcus pneumoniae AP200]
 gi|226695548|sp|B1I6Y3|TILS_STRPI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|147755957|gb|EDK63000.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP11-BS70]
 gi|168996831|gb|ACA37443.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|183574048|gb|EDT94576.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|306408184|gb|ADM83611.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Streptococcus pneumoniae AP200]
          Length = 425

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|322388490|ref|ZP_08062093.1| tRNA(Ile)-lysidine synthetase [Streptococcus infantis ATCC 700779]
 gi|321140803|gb|EFX36305.1| tRNA(Ile)-lysidine synthetase [Streptococcus infantis ATCC 700779]
          Length = 425

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 103/269 (38%), Gaps = 29/269 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            + +++A+SGG DSM L   L +   +     I+     V+H  R  +  E   +  +  
Sbjct: 19  HSRVVLALSGGLDSMFLFQLLLTYQKEL---DIELFLAHVNHKQRPESDKEENELRKLAE 75

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +  +   V  +     +      AR+ RY    E  +  ++T ++TAH  DDQ+ET++MR
Sbjct: 76  QAGVPIYVACFTGDFSEVN----ARQFRYEFFREVMEKTSSTALVTAHHADDQVETIFMR 131

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LS + +  ++     + RP L   ++D         I   ED +N ++ 
Sbjct: 132 LIRG--VRLQHLSAIKERQIFAKG-ELIRPLLSFYKKDFPE------IEHFEDSTNKENH 182

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           + R R+R     + L  L  +  + +   ++    V+        +     +      L+
Sbjct: 183 YLRNRIRN----LYLPQLEKENVQVKKAILEFGKEVSDYQIALAELSQAVDVEDLTQFLS 238

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSM 287
                   LL         Q  L  +  +
Sbjct: 239 FSEATQGVLL---------QQYLSRFADL 258


>gi|167581389|ref|ZP_02374263.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis TXDOH]
          Length = 478

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 112/322 (34%), Gaps = 21/322 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++++   + +    A I +A SGG DS  LL       + R  G  +  A+ V H L   
Sbjct: 2   LDAIGVALTAPPDDAPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSAN 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + + ++    L +          +    G+ A+AR+ RY  +        A  +  
Sbjct: 57  ADAWLAHCAETAQALGVRFDAARVDVPRASGQGVEASARDVRYRALETMCARYGARALWL 116

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q 
Sbjct: 117 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVMRVRPLLHLLRAQLERYAQQH 175

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
            + W +D SN D R+ R  +R  V    L AL      F+D   +     A    L+   
Sbjct: 176 ALRWIDDESNADTRYARNALRVDV----LPALAPHFPGFRDALGRAAQHAAAAQRLLDDL 231

Query: 242 LTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294
             + + ++      +L+      +D      LLR      G    S      M + +   
Sbjct: 232 AAIDLHAVARDDARVLSRDALVVLDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 291

Query: 295 KSGKRGCVSIGRVVIDRRANFL 316
           +      V      +    + +
Sbjct: 292 RDAHALRVDHAGWRLRLYRDDI 313


>gi|326799033|ref|YP_004316852.1| tRNA(Ile)-lysidine synthase [Sphingobacterium sp. 21]
 gi|326549797|gb|ADZ78182.1| tRNA(Ile)-lysidine synthase [Sphingobacterium sp. 21]
          Length = 443

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 137/367 (37%), Gaps = 35/367 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLR 81
           L+AVSGG DS+ ++             K+ F     +  LR   A  +   V ++ + + 
Sbjct: 24  LLAVSGGRDSVLMVHLFAK-------AKLPFGIAHCNFQLRGQHADADEELVRNLAAEME 76

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V  +       K    +  AAR  RY    +     +   I  AH  +D +ETV +
Sbjct: 77  VPLFVKRFDTIAYAKKQGISIEMAARALRYEWFEQIRSDQHYRYIALAHHQNDSVETVLL 136

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G+         +      + RP L   RE++   +L+RN+ + ED SN   
Sbjct: 137 NLTRGTGIAGLH-------GILPKRGVLIRPLLFLTREEVTQTVLERNLVYREDESNFST 189

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R ++R  V            + FQ+   +      +L      +  +  +  + +  
Sbjct: 190 DYLRNKIRLEVVPRLKAINPSLERTFQENSRRFEEMETLLKNYSEQLRKKLFVETTSNTY 249

Query: 258 NIDSTLLFYL--LRVSAAICGGQISLPGYRSMERVMLFL--------KSGKRGCVSIGRV 307
            I+   L  L  LR        ++  P Y+ +  V+  L        ++GK+      ++
Sbjct: 250 QIELKALQELKPLRTLLY----ELFRP-YQFLPEVLDDLVSIWQNDNRTGKQFFSDSYKL 304

Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG 367
           ++DR  N +   +   +LP   L P +  +  G +    L +  +++        D    
Sbjct: 305 LVDRE-NLILQKKEPVDLPHQFLQPNQAVICQGFHLTVKLVEKPVKMNEFGKVAVDADKL 363

Query: 368 IPPIIAQ 374
           + P++ +
Sbjct: 364 LFPLLVR 370


>gi|332198668|gb|EGJ12751.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA41317]
          Length = 425

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/317 (19%), Positives = 127/317 (40%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFKKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F++  + ++N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRNAILGISNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|148993574|ref|ZP_01823045.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|149003152|ref|ZP_01828061.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP14-BS69]
 gi|149007705|ref|ZP_01831314.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP18-BS74]
 gi|168487652|ref|ZP_02712160.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|168489346|ref|ZP_02713545.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae SP195]
 gi|225860057|ref|YP_002741566.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237651091|ref|ZP_04525343.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821203|ref|ZP_04597048.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298229478|ref|ZP_06963159.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255106|ref|ZP_06978692.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298501801|ref|YP_003723741.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae TCH8431/19A]
 gi|307126185|ref|YP_003878216.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae 670-6B]
 gi|254789053|sp|C1CNP4|TILS_STRZT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|147758893|gb|EDK65889.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP14-BS69]
 gi|147760700|gb|EDK67672.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP18-BS74]
 gi|147927795|gb|EDK78817.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP9-BS68]
 gi|183569575|gb|EDT90103.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183572160|gb|EDT92688.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae SP195]
 gi|225727017|gb|ACO22868.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298237396|gb|ADI68527.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|306483247|gb|ADM90116.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae 670-6B]
 gi|327388996|gb|EGE87344.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA04375]
 gi|332071714|gb|EGI82207.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA17570]
          Length = 425

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|332290992|ref|YP_004429601.1| tRNA(Ile)-lysidine synthetase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169078|gb|AEE18333.1| tRNA(Ile)-lysidine synthetase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 435

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 123/312 (39%), Gaps = 23/312 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
            +  + ILV VSGG DSM        +L       +  S    +  LR   +  +  +V+
Sbjct: 15  FLLDSKILVTVSGGLDSM-------LLLLLCRQAGLTMSVAHCNFNLRGVESDGDQVFVA 67

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             C+   I   +  +  S      +T    AARE RY    E +   +   I+TAH  +D
Sbjct: 68  SYCTLHNIPIYIKGFDTSAYAKTSKTSTQIAARELRYQWFKELSVAEDFDYILTAHHLND 127

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET  +   R    KG+       T +  +N  I RP L+  R+ IR++ L+  + W E
Sbjct: 128 DLETFLINLGRGTGIKGL-------TGIPVVNGEIVRPLLKFSRKQIRNYALKEGLQWRE 180

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN  D + R  +R         A    +K  Q  +  +  +   L+  Y     +  +
Sbjct: 181 DSSNGTDNYVRNHIRHHAIPNLEEAQPNILKGLQHTQEHLKQS-ERLLKVYTDQLRQQFM 239

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF--LKSGKRGCVSIGRVV 308
            +S     +D   L       A +    +S  G+ + + +      +SGK    S  R++
Sbjct: 240 TVSNGDEVMDLVELASHPEPEAVLY-QLLSPYGFTAWDDIYKLPQAQSGKEITSSTHRLL 298

Query: 309 IDRRANFLWITR 320
            +R    + + +
Sbjct: 299 KNREKLIISVIK 310


>gi|77164367|ref|YP_342892.1| tRNA(Ile)-lysidine synthase [Nitrosococcus oceani ATCC 19707]
 gi|254434774|ref|ZP_05048282.1| hypothetical protein NOC27_1705 [Nitrosococcus oceani AFC27]
 gi|76882681|gb|ABA57362.1| tRNA(Ile)-lysidine synthase [Nitrosococcus oceani ATCC 19707]
 gi|207091107|gb|EDZ68378.1| hypothetical protein NOC27_1705 [Nitrosococcus oceani AFC27]
          Length = 442

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/351 (20%), Positives = 126/351 (35%), Gaps = 22/351 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL +L  +           SAI +DH L   +++   +  + C+ L + 
Sbjct: 23  VAYSGGLDSQVLLYSLVQLSPK--LPGSLISAIHIDHGLHPRSEEWSLHCRESCAALGVG 80

Query: 84  HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           +  V      +      AAAREARY  +           ++TA   DDQ+ET+ ++  R 
Sbjct: 81  YEEVKVNAHPRKGESPEAAAREARYGALRRRIAL--GECLLTAQHQDDQVETLLLQLLRG 138

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                                 + RP L   R +++ +  Q  + W EDPSN D  F+R 
Sbjct: 139 GGPA---GLAAMAKAAPFGQGRLLRPLLSFSRSELKIYAEQEGLVWVEDPSNFDLEFDRN 195

Query: 203 RVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            +R  +  +       L   + +    +      +     + L         +S   L  
Sbjct: 196 YLRHKILPLLWQRWPGLGRTLSRAAFHQADAAWLLDQQAQRELVAVSAGKQGLSVQALQA 255

Query: 260 DSTLLFY-LLRVSAAICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRANF 315
            +       LR        Q+ LP    ++R++   L      +  V+     + R  + 
Sbjct: 256 LAPPQRRNSLRYWFKQM--QLPLPDSIHLQRILEEVLPAPEDAQPLVAWPGAELRRYRDR 313

Query: 316 LWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366
           L+   A + LP       E  VW+G       +     + P+  R   + +
Sbjct: 314 LY---AQKPLPPHDAA--EILVWEGVEPLVLPAGVGGVLVPKRTRGLGLDA 359


>gi|22299159|ref|NP_682406.1| hypothetical protein tlr1616 [Thermosynechococcus elongatus BP-1]
 gi|61217355|sp|Q8DIH2|TILS_THEEB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|22295341|dbj|BAC09168.1| ycf62 [Thermosynechococcus elongatus BP-1]
          Length = 344

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 56/263 (21%), Positives = 99/263 (37%), Gaps = 19/263 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L   + IL+A+SGG DS+ L   L  +       +    A+  DH  R  +     +V
Sbjct: 17  QWLPLGSRILIALSGGQDSVCLTRLLLDLQP---HWQWSLVAVHCDHRWRADSTANANFV 73

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +  +  +   VVS  +        AAAR  RY +    AK ++ T ++TAHT  D+ E
Sbjct: 74  QQLAQKWHLPCEVVSAPDLPKT---EAAARSWRYQVFESVAKALDCTHVVTAHTQSDRAE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           ++ +   R  +  G+       ++     + + RP L   R    +F     +   +D +
Sbjct: 131 SLLLHLLRGTSPDGLATLLPSRSL---GAIQLVRPLLGMTRAQTAAFCQAYGLPIWQDET 187

Query: 194 NTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           N +  + R R+R        +        AL    +     R      V  L P  L  H
Sbjct: 188 NHNLEYRRNRLRLELIPYLQQHFNPNVEEALAQTAELLASDRAYFEAEVERLAPTVLREH 247

Query: 246 MRSIIAISQDILNIDSTLLFYLL 268
             ++  +   +      L   L+
Sbjct: 248 PPALDRLR--LREFPLALQRRLI 268


>gi|225855746|ref|YP_002737257.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae P1031]
 gi|254789052|sp|C1CN76|TILS_STRZP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225726142|gb|ACO21994.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae P1031]
          Length = 425

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|77407669|ref|ZP_00784424.1| MesJ/Ycf62 family protein [Streptococcus agalactiae COH1]
 gi|77173668|gb|EAO76782.1| MesJ/Ycf62 family protein [Streptococcus agalactiae COH1]
 gi|319746208|gb|EFV98477.1| tRNA(Ile)-lysidine synthetase [Streptococcus agalactiae ATCC 13813]
          Length = 424

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 20/251 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+AVSGG DS+ LL  L+    + S   I      ++H  R+ ++ E  Y+    
Sbjct: 17  AHQKVLIAVSGGIDSINLLQFLYQYQKELS---ISIGIAHINHGQRKESEKEEEYIRQWG 73

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
               +   +  ++           AR  RY   S+  +    T ++TAH  DDQ ETV+M
Sbjct: 74  QIHDVPVFISYFQGIFS----EDRARNHRYNFFSKVMREEGYTALVTAHHADDQAETVFM 129

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R  R    +   LSG+     +  N  + RPFL  ++E +       NI   ED SN   
Sbjct: 130 RILRGSRLRY--LSGIKQVSAFA-NGQLIRPFLPYKKELLP------NIFHFEDASNASS 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            + R R+R     I    L  +  + +D  + ++     L      +     +    D L
Sbjct: 181 DYLRNRIRN----IYFPTLERENNQLKDSLITLSEETECLFTALTDLTRSIEVTNCYDFL 236

Query: 258 NIDSTLLFYLL 268
               ++  +LL
Sbjct: 237 RQTHSVQEFLL 247


>gi|322390535|ref|ZP_08064053.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC
           903]
 gi|321142809|gb|EFX38269.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC
           903]
          Length = 424

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 105/298 (35%), Gaps = 26/298 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL   E    F         +LVA+SGG DSM L   L+    ++   KI      V+H 
Sbjct: 5   FLEFCEKQDLFT----PHRRVLVALSGGLDSMNLYELLYK---NKERLKIHLVLAHVNHG 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E   +  +  R      V  +          A AR  RY    +  +  + T 
Sbjct: 58  QRPESDLEESELRTLADRRETRIHVAHYSGDFT----EAKARTFRYDFFKQIMEKEDCTA 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++T H  +DQ ET +MR  R    +   LSG+     +     + RP L   ++++    
Sbjct: 114 LVTGHHANDQAETTFMRLIRGTKLR--HLSGIPVRQPFGKG-ELIRPLLTFTKDELM--- 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN    + R RVR                  + L  +VN     L    
Sbjct: 168 ---KIPHFEDSSNDSQDYFRNRVRHQYLPEFEKENPQMQASLRYLAEEVNRWHQALKELT 224

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
             + ++ + +  +   ++ S LL   L     +  G          + ++  L+  + 
Sbjct: 225 SKLSIQDLASFRKYSHSVQSFLLEEYLAQFPDLQLG------RAQFQELLDLLRKKRN 276


>gi|331016383|gb|EGH96439.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 445

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 111/325 (34%), Gaps = 20/325 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    +       AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  K  +P   +  AAR+ARYA  ++  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVKV-EPGASVEQAARQARYAAFTK--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L          +        L +    
Sbjct: 202 LRSQVLSLLTSRWPQATASLARTAGHLGEAQQLLDELAAQDVASAQATTPFAWLGLPVLN 261

Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  + R+S A               LP          +       R    +    + R  
Sbjct: 262 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 321

Query: 314 NFLWITRA--VRNLPTLILYPEETT 336
             +W   A   R     + + +  T
Sbjct: 322 GCIWWLPAGWERTCSEAVNWADPHT 346


>gi|254428462|ref|ZP_05042169.1| PP-loop family [Alcanivorax sp. DG881]
 gi|196194631|gb|EDX89590.1| PP-loop family [Alcanivorax sp. DG881]
          Length = 433

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 122/325 (37%), Gaps = 20/325 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                +L+A+SGG DS      L   L  ++    + SA+ +DH L+  ++   R+   +
Sbjct: 15  APDGPLLLALSGGLDS-----CLLLHLLIKAGLGPRLSAVHIDHQLQADSQGWARFCQAL 69

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +  I  ++          GL A AR+ARY ++   A+   ATL+M AH  +DQ ET+ 
Sbjct: 70  ADQQGIPLAIEKV-AVDMANGLEAGARDARYRVLLPLARAQGATLVM-AHHRNDQAETLL 127

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R    +G+              + + RP L   R+ + S+    +++W EDPSN D
Sbjct: 128 FRLLRGAGVQGLSAMREHSEQ---QGVPLWRPLLGVGRQTLESWGAALSLNWREDPSNQD 184

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----IPKYLTVHMRSIIAI 252
               R  +R  +                     +  A  +L    +    ++ +      
Sbjct: 185 QSLRRNYLRHTIFPALRDRWPGADGTLARAADHMAEAGELLNEIAVQDADSLGVAGASFP 244

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVID 310
             D+ ++       +LR        + + P    +E  RV+       +  V  G     
Sbjct: 245 LTDLADLSLARQRNVLRWWLQ--QNRATAPSAAVLEQLRVLHLAAGDSQARVEWGGFAAR 302

Query: 311 RRANFLWI--TRAVRNLPTLILYPE 333
                L++    A +     +L+ E
Sbjct: 303 LYRGALYLASREAFQPWQGDVLWSE 327


>gi|61216635|sp|Q886M6|TILS_PSESM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 445

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/308 (22%), Positives = 106/308 (34%), Gaps = 18/308 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    +       AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  K  +P   +  AAR+ARYA  +E  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVKV-EPGASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L          +        L +    
Sbjct: 202 LRSQVLPLLTSIWPHATASLARTAGHLGEAQQLLDELAAQDVANAQATTPFSWLGLPVLN 261

Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  + R+S A               LP          +       R    +    + R  
Sbjct: 262 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 321

Query: 314 NFLWITRA 321
             +W   A
Sbjct: 322 GCIWWLPA 329


>gi|170750723|ref|YP_001756983.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM
           2831]
 gi|170657245|gb|ACB26300.1| tRNA(Ile)-lysidine synthetase [Methylobacterium radiotolerans JCM
           2831]
          Length = 345

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 128/304 (42%), Gaps = 16/304 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DS  L+ A   +   R          +VDH LR  +  E   V      L +
Sbjct: 2   LLAVSGGPDSSALMHAAARL---RDATGASLRVATVDHGLRSESGAEAEAVGRAARALGL 58

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H++++W  +KP TGL  AAR ARYAL++ HA+ + A L++T HT DDQ ETV +R    
Sbjct: 59  PHAILTWAGAKPGTGLQDAARRARYALLAAHAEAVGAGLVLTGHTRDDQAETVLIRLAAG 118

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL+GM         L + RPFL   +  + ++   R I++  DP+N D RF R 
Sbjct: 119 SGP--AGLAGMRAERDLGPGLALGRPFLHLPKASLVAWCAARGIAYARDPANGDPRFARG 176

Query: 203 RVRRFVRDIDLHALY-LKMKKF----QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R+R     ++   L   ++ +           + +A    +         +   +  D  
Sbjct: 177 RLRAAWPALEREGLTRARLARLAERAARDEAALRSAAEQALDGARRSGPETGAELRLDGR 236

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRS------MERVMLFLKSGKRGCVSIGRVVIDR 311
            + +      LR          + P          +E ++  L+ G+    ++   ++  
Sbjct: 237 ALAALPDAVALRCLDLALARAGAAPRRLERLETLVLESLLPALRRGEPVRRTLAGFLVSA 296

Query: 312 RANF 315
            A  
Sbjct: 297 DAGG 300


>gi|163847595|ref|YP_001635639.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222525450|ref|YP_002569921.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl]
 gi|163668884|gb|ABY35250.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aurantiacus J-10-fl]
 gi|222449329|gb|ACM53595.1| tRNA(Ile)-lysidine synthetase [Chloroflexus sp. Y-400-fl]
          Length = 474

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 128/324 (39%), Gaps = 36/324 (11%)

Query: 6   IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ +R F+R+       A +LVAVSGGSDS+ LL  L ++      G        +DH L
Sbjct: 2   LDLLRQFLRAEGVEQASARLLVAVSGGSDSLALLHMLCTL---HRAGGPTPIVAHLDHGL 58

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           R   +  +  +V+   +   +   V   +   P     A AR ARY  ++  A   +   
Sbjct: 59  RGAESAADADFVAATATAWGVRAIV--GRAHLPPGTTPAEARTARYTFLATTALAEHVDA 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--------------DLNLWISR 167
           ++ AH  DDQ ETV M   R       GL GM   + +                   + R
Sbjct: 117 VLVAHQADDQAETVLMHLLRGAGP--AGLRGMRARVEWSEWAAALIESGQAPPHGPPLLR 174

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMKKFQDL 226
           P L   R ++ ++     ++  +DP+N +  + R R+R   +  +      +     +  
Sbjct: 175 PLLTVSRSELAAYCAAHQLTPRDDPTNRNLHYVRARIRHVLLPQLASENPQITAALTRTA 234

Query: 227 RVKVNNA---VAMLIPKY----LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
           R+   +      ML  ++    +      ++     +++I   L  Y LR + A  G + 
Sbjct: 235 RICAEDYDFIQTMLADQWPNLIVEQQSDKVVFERAALMSIHPALRRYALRRAIAELGAEE 294

Query: 280 SLPGYRSMERVMLFLKSGKRGCVS 303
             PG   ++  +  L  G+ G  +
Sbjct: 295 --PGLAHLDAAL-HLIGGQSGRST 315


>gi|295395569|ref|ZP_06805763.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971588|gb|EFG47469.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 326

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/315 (22%), Positives = 126/315 (40%), Gaps = 21/315 (6%)

Query: 7   ESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
             +R  V   + P H  L+AVSGG+DSM L  A   +         +F A++VDH L+E 
Sbjct: 12  AKIRKAVEDALEPGHTYLIAVSGGADSMSLAAACAFLTRK----DYEFVAVTVDHGLQEG 67

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + +         + L +  +V + + +    GL A AR ARYA +   AK   A  ++ A
Sbjct: 68  SAEVAARTQRALTDLGLTATVETAEVTATSDGLEADARTARYAALDRVAKERGAAGVLLA 127

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT +DQ ETV +   R    + +                  RP L   R +  S    +N
Sbjct: 128 HTQNDQAETVLLGLLRGSGARSLAGM-------RPRAGRYIRPLLGITRAETESATTAQN 180

Query: 186 ISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
           I    DP N+D  F RV+VR      + ++    +Y  + +   L    ++ +       
Sbjct: 181 IPVWNDPMNSDPSFTRVKVRTQLMPALAEVAGSGVYANLARTAHLLAMDSDELESQTDAQ 240

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLFLKSGKR 299
             +   +++  + ++    + L   ++R          +       +++ ++   ++G  
Sbjct: 241 AHIRGDTLLHTAAEL---PAALRTRVIRDWLWQFSPTNEAGFHHVTAIDDLLTGARTGAV 297

Query: 300 GCVSIGRVVIDRRAN 314
            C     VV  R  +
Sbjct: 298 SCPPAAEVVRTRAGD 312


>gi|148984555|ref|ZP_01817843.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|147923332|gb|EDK74446.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP3-BS71]
 gi|301799160|emb|CBW31672.1| putative ATP-binding PP-loop family protein [Streptococcus
           pneumoniae OXC141]
          Length = 425

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|168493989|ref|ZP_02718132.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575851|gb|EDT96379.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 425

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|301383970|ref|ZP_07232388.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato
           Max13]
 gi|302064144|ref|ZP_07255685.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato
           K40]
 gi|302134071|ref|ZP_07260061.1| cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 445

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 111/325 (34%), Gaps = 20/325 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS  LL  L  +    +       AI V H L+  A     +   VC  L +A
Sbjct: 30  VGFSGGLDSTVLLHLLAELAKRANLPA--LHAIHVHHGLQAIADAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  K  +P   +  AAR+ARYA  +E  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FESVRVKV-EPDASVEQAARQARYAAFTE--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       ++RP L   R ++ S+  ++ + W EDPSN D +F R  
Sbjct: 145 GVRGLAAMPEQRRL---GRGHLARPLLGVSRVELESYARRQGLRWVEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                  +  A  +L          +        L +    
Sbjct: 202 LRSQVLPLLTSRWPHATASLARTAGHLGEAQQLLDELAAQDVANAQATTPFSWLGLPVLN 261

Query: 264 LFYLLRVSAA--------ICGGQISLPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  + R+S A               LP          +       R    +    + R  
Sbjct: 262 LGPIARLSGARQRNVMRHWLAPLTRLPDSDHWAGWEALRDAAQDARPLWRLADGALHRAQ 321

Query: 314 NFLWITRA--VRNLPTLILYPEETT 336
             +W   A   R     + + +  T
Sbjct: 322 GCIWWLPAGWERTCSEAVNWADPHT 346


>gi|146308057|ref|YP_001188522.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina ymp]
 gi|145576258|gb|ABP85790.1| tRNA(Ile)-lysidine synthetase [Pseudomonas mendocina ymp]
          Length = 440

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 134/401 (33%), Gaps = 46/401 (11%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS  LL  L              SAI V H L+  A     + + VC+RL I 
Sbjct: 23  IAFSGGLDSSVLLHLLADWAQHEELPP--LSAIHVHHGLQPAADAWPEHCALVCARLDIP 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +V  + + P   L  AAR A     +   +     +++ A   DDQ ET+  R  R  
Sbjct: 81  LDIVRAQVA-PGASLEQAARRA--RYAAFAERLGPGEILLGAQHRDDQAETLLFRLLRGA 137

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+    +  ++       + RP L C R ++ ++     ++W EDPSN D+RF R  
Sbjct: 138 GVRGLAAMPVSRSL---GCGTLLRPLLGCSRAELHAYAQCHGLAWVEDPSNADERFSRNF 194

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDIL---- 257
           +RR V  +                  +  A  +L  + +   +  R + A+    L    
Sbjct: 195 LRRQVMPLLAERWPQLAASLSRSAGHLGEAQQLLEELAEMDLLAARGVCALPWLPLPSLD 254

Query: 258 -----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
                 +       LLR   A          +     +     +       +    + R 
Sbjct: 255 LSAVAALSDARQRNLLRHWLAPMSRMPDSDHWAGWYDLRD-AAADATPIWKLADGELHRA 313

Query: 313 ANFLWITR------------AVRNLPTLILYPEETTV----------WDGRYQFQNLSDS 350
              LW                   L   +  P    V          W  RY+    S  
Sbjct: 314 EGRLWWLSGDWLRPPQPFDLPCGALGEPVELPGNGRVNLSGELPQGHWHLRYRVGGESLQ 373

Query: 351 LIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
           +   G +  ++      +PP +  R    +P    G  L+A
Sbjct: 374 VPGRGRRDLKRLLNEMRVPPFVRSR----LPLLFDGDELVA 410


>gi|168484297|ref|ZP_02709249.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172042410|gb|EDT50456.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 425

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAETELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPKLEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|148988915|ref|ZP_01820330.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP6-BS73]
 gi|147925726|gb|EDK76802.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP6-BS73]
          Length = 425

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPKLEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|254522025|ref|ZP_05134080.1| tRNA [Stenotrophomonas sp. SKA14]
 gi|219719616|gb|EED38141.1| tRNA [Stenotrophomonas sp. SKA14]
          Length = 428

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 117/344 (34%), Gaps = 18/344 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              A +LV  SGG DS  LL  L               A+ V H L+  A D VR+    
Sbjct: 9   PLDAPLLVGYSGGVDSTVLLHWLWRCAQASGTP---LRAVHVHHGLQSAADDWVRHCQQQ 65

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C+   I  +V   + +   TGL       +    +  A+  +   ++ A   DDQ ET  
Sbjct: 66  CTTWDIELAVHHVQVA-VGTGLGIEGAARQARRAAFAAELRDGETLVLAQHQDDQAETFL 124

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +R+ R     G+        +       + RP L+  R+ +  +  Q  + W EDPSN D
Sbjct: 125 LRALRGSGVDGLAAMSAHSRLGRHS---LWRPLLQVPRDVLLDYARQHTLYWVEDPSNAD 181

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--- 253
           D  +R  +R  V  +                        +L  +   +     +A     
Sbjct: 182 DHADRNFLRLQVLPLLRQRWPHAAAALAGSAAHCAQTRELLDEEDAELIAHLEVAPRVLS 241

Query: 254 -QDILNIDSTLLFYLLRVSAAICGGQISLPG--YRSMERVMLFLKSGKRGCVSIGRVVID 310
            Q +  I       +LR    +  G   LP    +     +L   + ++  V      I 
Sbjct: 242 LQLLRQISPGRAARVLRAWV-LGHGAAPLPATVLQQALAELLPADNDRQARVGWHDHAIQ 300

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
           +  +  ++  A       +L  +    WDGR          +++
Sbjct: 301 QWRDHAYLLPARL----PVLPRDWQAEWDGRMPLALPDGGQLRL 340


>gi|110639392|ref|YP_679602.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282073|gb|ABG60259.1| tRNA(Ile)-lysidine synthetase [Cytophaga hutchinsonii ATCC 33406]
          Length = 450

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 23/262 (8%)

Query: 6   IESVRFFV--RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  +R F+  + L      IL+ VSGG DS+ L                 F     +  L
Sbjct: 2   LHELRQFISEKQLFSSNEKILLTVSGGIDSIVLFDLFVK-------AGFSFGVAHCNFSL 54

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
           R   +  + ++VSD+  +  I+  V  +      S     +  AARE RY    E A+  
Sbjct: 55  RGSESDGDEQFVSDLAIKQGISIHVKRFDTSAFASNNALSIQMAARELRYTWFKELARQY 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I TAH  +D +ET  +   R       GL G+ +      N  I RP L   R+ I
Sbjct: 115 GYAAIATAHQLNDIIETTLINLSRGTGI--AGLHGIPEK-----NGEIIRPLLFAGRDKI 167

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           RS+  + N+ W ED SN ++++ R  +R  +  + L  L   +++      +       L
Sbjct: 168 RSYAEENNLKWREDSSNMEEKYARNLIRHKIVPV-LKNLNPNLEEVFKQNTERFKGTEQL 226

Query: 238 IPKYLTVHMRSIIAISQDILNI 259
              ++  + + ++  + D  +I
Sbjct: 227 FKHHIQQYRQQLLQSTPDGYSI 248


>gi|194333384|ref|YP_002015244.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris aestuarii DSM 271]
 gi|194311202|gb|ACF45597.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris aestuarii DSM 271]
          Length = 336

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 122/323 (37%), Gaps = 48/323 (14%)

Query: 3   LSPIESVRFFVRSLV------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           L+PIE  + FV  L         + +L AVSGG DSM L+  L    S R          
Sbjct: 5   LTPIE--KAFVEQLTTRKLVEKGSSVLAAVSGGPDSMALMHLL---QSARPVLHFSLEIA 59

Query: 57  SVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALIS 111
                LR+  +  +   V++  +RL +   +  +   +     +  +   AR  RY   S
Sbjct: 60  HCHFGLRDRESDLDESLVAEEAARLGLRCHIRHFDTRRDAGSWKKSIEETARIERYGFFS 119

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  +T     + T H  +D  ET+     R  +  G+         +   +  + RP L 
Sbjct: 120 ELQRTCGFDRVATGHHVNDNAETILFNLFRGTSVPGL-------KGIRAHHGTLIRPMLL 172

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLR 227
            RRED+ S++  +NI++  D SN     +R  +R  V  +      H L   +++  +  
Sbjct: 173 MRREDVMSYIDAKNIAYRTDASNFGIEPDRNFIRHRVIPVIEERFQHKLLPSLRRISE-- 230

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
                  A  + ++L +H   +   +  +   D  L    L                 + 
Sbjct: 231 ------QAGELEEFLELHFEKLQQENDGLRLCDDCLRVSDLARLT-------------TF 271

Query: 288 ERVMLFLKSGKRGCVSIGRVVID 310
           ER  LF ++ +  C+     VID
Sbjct: 272 ERKELFKRALQELCIEPSSKVID 294


>gi|218439938|ref|YP_002378267.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7424]
 gi|218172666|gb|ACK71399.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7424]
          Length = 323

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 118/313 (37%), Gaps = 19/313 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ILVAVSGG DS+     L  +   +   +   +    DH    T      +V  
Sbjct: 20  LPKKERILVAVSGGQDSL---CLLKLLGDLQPKWEWDLTIAHCDHQW-PTDAGIKDHVQQ 75

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + ++ +I   + +  N K      AAAR+ RY  + E AK    + I+T HT  D+ ET 
Sbjct: 76  IANQWKIPFYLKTADNLKET---EAAARKWRYQALIEIAKEQGFSFIVTGHTKSDRAETF 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R     G  LS +        N+ + RP L   R +   F  Q  +   ED  N 
Sbjct: 133 LYNLIRGAGTDG--LSALTWERFLTENIKLVRPLLEISRAETYQFCQQFQLPIWEDVLNE 190

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           + ++ R R+R  +          +++K        +   V  L         +SI     
Sbjct: 191 NFKYTRNRIRSQLIPYLQTHFNPQIEKTLTQTAEVLRAEVEYLEATAQEWLQKSITEDKL 250

Query: 255 DI-----LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI--GRV 307
            I      ++   L   ++R    +   +   P +  +E ++  + +  R  +S   G  
Sbjct: 251 GINRTIVKSLPLALQRRVMRQFLILILSKT--PNFEQIEALVNLIHAPNRSSISSLPGGK 308

Query: 308 VIDRRANFLWITR 320
           +I+ +  +L + +
Sbjct: 309 IIEVQGEWLNLKK 321


>gi|332077819|gb|EGI88278.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA41301]
          Length = 412

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|83720432|ref|YP_442474.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264]
 gi|83654257|gb|ABC38320.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264]
          Length = 494

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 113/322 (35%), Gaps = 21/322 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++++   + +    A I +A SGG DS  LL       + R  G  +  A+ V H L   
Sbjct: 14  LDAIGVALSAPPDDAPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + + ++    L +          +    G+ A+AR+ RY  +        A  +  
Sbjct: 69  ADAWLAHCAETAQALGVRFDAARVDVPRASGQGVEASARDVRYRALETMCARYGARALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVMRVRPLLHLLRAQLERYAQQH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
            + W +D SN D R+ R  +R  V    L AL      F+D   +     A    L+   
Sbjct: 188 ALRWIDDESNADTRYARNALRVDV----LPALAPHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294
             + +R++      +L+      +D      LLR      G    S      M + +   
Sbjct: 244 AAIDLRAVARDDARVLSRDALVVLDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFL 316
           +      V      +    + +
Sbjct: 304 RDAYALRVDHAGWRLRLYRDDI 325


>gi|256544712|ref|ZP_05472084.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399601|gb|EEU13206.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 462

 Score =  186 bits (472), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 67/316 (21%), Positives = 113/316 (35%), Gaps = 35/316 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F S IE      ++      I+V  SGG DS  L+  L+ V   + + KI      ++H 
Sbjct: 11  FKSTIEKNNLIEKN----DTIIVGASGGPDSQFLIYLLNEV---KDYYKINIVLAHLNHL 63

Query: 62  LRETAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            R  A ++ + V     +L     I H  +     K +     A R  RY          
Sbjct: 64  HRLDANEDEKLVEKTGEKLEFKTFIDHKSMDDYAKKEKISAENAGRILRYDFFRSIKNKY 123

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I  AH  DDQ ETV MR  R     G+         +   N  I RP +   + +I
Sbjct: 124 KNAKIAVAHNKDDQAETVLMRIIRGSGLDGL-------RAMDYKNKDIIRPIMDFTKSEI 176

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV--- 234
             FL +  IS+  D +N +  + R ++R  +    +  +      F++  V +++     
Sbjct: 177 LEFLDENKISYHIDYTNLETDYTRNKIRLEI----IPEIEKINPNFKNSLVSLSDIAKSD 232

Query: 235 ---------AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
                      L    +      I     +   I   L   L+R +     G I+     
Sbjct: 233 YKIIRKVEDEKLEKILIKKDTNHISFDKNEFEEISDALKARLIRRAVEFLYGNINDFSKT 292

Query: 286 SMERVMLFLKSGKRGC 301
           ++E  +  ++S + G 
Sbjct: 293 NIEDFIK-IRSLENGK 307


>gi|149020169|ref|ZP_01835143.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP23-BS72]
 gi|147930847|gb|EDK81828.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP23-BS72]
          Length = 425

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 24/267 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLL 268
             +     +   Q + +   +    LL
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLL 248


>gi|319945971|ref|ZP_08020220.1| tRNA(Ile)-lysidine synthetase [Streptococcus australis ATCC 700641]
 gi|319747779|gb|EFW00024.1| tRNA(Ile)-lysidine synthetase [Streptococcus australis ATCC 700641]
          Length = 424

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 110/286 (38%), Gaps = 23/286 (8%)

Query: 9   VRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++F  +  ++ +H  +L+A+SGG DSM LL  L+          I      V+H  R  A
Sbjct: 6   LQFCQKEGLFESHQKVLLALSGGVDSMTLLDWLYHYQHQLG---IDLVLAHVNHHQRVEA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             E R + ++     +   V  +          + AR+ RY    +  K    + I+TAH
Sbjct: 63  DQEERGIRELAEAKHLPLKVAHFSGPFS----ESRARQFRYDFFEKVMKEEACSAIVTAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DDQ ET+ MR  R    +   L G+     +   + + RP L  +++D         I
Sbjct: 119 HMDDQAETILMRVIRGSRPR--HLKGIPLKQPFGQGM-LIRPLLHFKKKDFPE------I 169

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
              ED SN    + R R+R     +        +    +L   +++    L      ++ 
Sbjct: 170 FHYEDKSNRSLDYFRNRIRHRYLPLLEEENPQVISALVNLGEDLSHWHQALKELTKDLNP 229

Query: 247 RSIIAISQDILNIDSTLLFYLL-RVSAAICGGQISLPGYRSMERVM 291
           + +    +        +  YLL    A     Q+S   +  + R++
Sbjct: 230 QDVTQFQKQ----SPAVQIYLLEEYLAGFPDLQLSRAQFEQLHRIV 271


>gi|291565670|dbj|BAI87942.1| tRNA(Ile)-lysidine synthase [Arthrospira platensis NIES-39]
          Length = 345

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 126/330 (38%), Gaps = 26/330 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             V   +RS   L     +LVAVSGG DSM L+  L  +    ++   + +    DH  R
Sbjct: 13  AKVHRSLRSRNLLPCGEALLVAVSGGQDSMCLIRLLLDLQGKWNW---RMAIAHCDHQWR 69

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             +     Y+ ++    ++    ++           AAARE RY ++ E A+T N   ++
Sbjct: 70  RDSVANADYIEELGKIWQVPCYRLTAPQIPKT---EAAAREWRYQVLGEIAQTDNYGYVV 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSF 180
           T HT  D+ ET+     R     G+        I          + RP L   R++   F
Sbjct: 127 TGHTKSDRAETLLYNLIRGSGADGLTSLVWSRPIFGRETETKPILVRPLLEITRQETGEF 186

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIP 239
             QR++   ED +NTD  + R R+R  +     +    K+++        +   V  L  
Sbjct: 187 CQQRDLQIWEDSTNTDVSYARNRIRHQLIPELANKFNPKVEQALAQTAELLRADVEYLEQ 246

Query: 240 KYLTVHMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           +   ++  ++     +         + +    L   ++R        + +   +  +E++
Sbjct: 247 EADELYSLAMAPAPCNNSYGVNRHKLKSAPLALQRRVMRRFLEEVLRKGT--NFEQVEKL 304

Query: 291 --MLFLKSGKRGCVSIGRVVIDRRANFLWI 318
             +++  +  +     G  +      ++W+
Sbjct: 305 TRLIYAPNRSQSDPFPGGAIAQVEGEWIWL 334


>gi|261417161|ref|YP_003250844.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373617|gb|ACX76362.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328185|gb|ADL27386.1| tRNA(Ile)-lysidine synthetase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 393

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 110/269 (40%), Gaps = 35/269 (13%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L+ +E++R           +L+AVSGG DS+ L    + + +  + G        V H
Sbjct: 1   MSLNLVENIRH-----HGFKRLLLAVSGGLDSICLAH--YFIENSAALGIEWLGIAHVHH 53

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHA-- 114
            LRE  A  + ++V +      +   +           +  L   AR+ARY  + E A  
Sbjct: 54  GLREGTADRDAKFVEEFAKSHDVPFFLKKLDGEALKNAEGSLEENARDARYKALVEIALN 113

Query: 115 -------------KTINAT-LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                        +    T  I+TAH   DQ ET+YMR +R     G+        I  D
Sbjct: 114 KKWRSRNGVRDDIEEGGVTIAIVTAHHAGDQAETMYMRLKRGTTLAGLRGIQEVRIIQDD 173

Query: 161 LNL--------WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            +L        ++ RPFL   R+++ ++  +  +SWCED SN D +F R ++R       
Sbjct: 174 TSLVSRLSSLVFLYRPFLNVTRKELLTYARENGLSWCEDESNADVKFARNKIRHEFLPNL 233

Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
                  +++   +    + A A ++ K 
Sbjct: 234 ERECPGAIQQLCKIAGLADRAYAKVMAKC 262


>gi|194366664|ref|YP_002029274.1| tRNA(Ile)-lysidine synthetase [Stenotrophomonas maltophilia R551-3]
 gi|194349468|gb|ACF52591.1| tRNA(Ile)-lysidine synthetase [Stenotrophomonas maltophilia R551-3]
          Length = 476

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 140/407 (34%), Gaps = 35/407 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +V  F   +   A +LV  SGG DS  LL  L               A+ + H L+  
Sbjct: 46  LAAVTAFPALVPLDAPVLVGYSGGVDSTVLLHWLWRCAQASGTP---LRAVHIHHGLQAA 102

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           A + V +    C  L I  +V   +     TGL       +    +  A+      +  A
Sbjct: 103 ADEWVLHCQQQCIALGIELAVHRVQVES-DTGLGPEGAARQARRAAFAAELREGETLALA 161

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ET  +R+ R     G  L+ M    L D +  + RP L+  R  +     Q  
Sbjct: 162 QHQDDQAETFLLRALRGSGIDG--LAAMSADSLLDGH-RLWRPLLQVPRSTLLDHARQHA 218

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-------LKMKKFQDLRVKVNNAVAMLI 238
           + W EDPSN DD  +R  +R  V  +                   +  R  ++   A LI
Sbjct: 219 LRWIEDPSNGDDHADRNFLRLQVLPLLRQRWPHAAAALAGSALHCRQTRDLLDEEDAELI 278

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG--YRSMERVMLFLKS 296
                + +   +   Q +  +       +LR    +  G   LP    +     +L   +
Sbjct: 279 ---THLEVAPRVLSLQLLRQVSPGRAARVLRAWV-VGHGAAPLPATVLQQALDELLPADN 334

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGP 356
            ++  V      I +  +  ++      +   +L  +    WDGR          +++  
Sbjct: 335 DRQARVRWHDHAIQQWRDHAYLL----PVQLPVLPNDWQAEWDGRAPLPLPDGGQLRL-- 388

Query: 357 QSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL--------LAPFSR 395
           Q     + P  +   +    +  +P ++    L        LAP+ R
Sbjct: 389 QGIAAFERPLQVRARVGGERIQ-LPGRQHSHALKDCLQREHLAPWRR 434


>gi|323143578|ref|ZP_08078255.1| tRNA(Ile)-lysidine synthetase [Succinatimonas hippei YIT 12066]
 gi|322416641|gb|EFY07298.1| tRNA(Ile)-lysidine synthetase [Succinatimonas hippei YIT 12066]
          Length = 449

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 17/320 (5%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +  + F +   + PA I V +SGG+DS   L  L +     +  +    A    H L   
Sbjct: 10  LNRLAFSLIHKLKPAPITVGLSGGADST--LALLVACKLQETDPRFSVLACHCIHGLDAD 67

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
               +++  D+C RL++                   A+R+ RY  + E+        +M 
Sbjct: 68  DPIWLKHCQDLCQRLKVKLVTPKLNIVYGNGVSPEDASRKERYRALLENLSPNG--YLML 125

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DDQ+E + +  +R    +G+G      T+  D    I RP L   ++DI + L   
Sbjct: 126 GHQSDDQVENLLLALKRGSGPRGLGGM---STVTCDNRGTIIRPLLDLSKKDIENILTAL 182

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
              W  D SNT  +FER  +R  V  + L   ++ + K      K+      L  +Y   
Sbjct: 183 GFDWVFDISNTYLKFERNFIRLKVLPL-LRQRFIGIDKAILKSAKLCAFEHDLASRYAET 241

Query: 245 HMRSIIA---ISQDILNIDSTLL-FYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GK 298
                +A      D ++I+   L F++LR          S P + ++      +K+   +
Sbjct: 242 FYTQAVADDIFYIDKIDIEDQALTFFVLRRFLFNF--LSSAPDFNTVAACYDLIKASNDQ 299

Query: 299 RGCVSIGRVVIDRRANFLWI 318
            G V      I R  N L I
Sbjct: 300 EGVVEFADKEIRRYLNTLRI 319


>gi|158422151|ref|YP_001523443.1| cell cycle protein [Azorhizobium caulinodans ORS 571]
 gi|158329040|dbj|BAF86525.1| cell cycle protein [Azorhizobium caulinodans ORS 571]
          Length = 332

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 17/307 (5%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86
           SGG DS  +L+ L  +          F   +VDH LR  A DE   V  +C  L + H +
Sbjct: 2   SGGPDSTAMLV-LARIWRYGLLDGPSFFVATVDHGLRPEATDEALAVGALCEELGLPHVI 60

Query: 87  VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146
           + W+  KP++G+  AAR+ R+AL+   A+      +  AHT DDQ ETV  R  R     
Sbjct: 61  LPWRGPKPRSGIQEAARDERFALLRSFARQNGLDGLALAHTQDDQAETVLFRLCRGSGIG 120

Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR- 205
           G+        +     L + RPFL   +  + + L      +  DPSN D R+ R R+R 
Sbjct: 121 GLAAM---RPVSRRNGLAVLRPFLSIAKARLVATLAVSGTPFVRDPSNEDTRYARPRLRA 177

Query: 206 -------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
                    +    L  L  +  +  D      +A   L+              ++    
Sbjct: 178 ISPLLGAEGLDAARLAVLAQRAARADDALEAATDAAQKLLVHGGWDDEAGTRLDAEGFFR 237

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG----KRGCVSIGRVVIDRRAN 314
           +   +   LL  +  +   +  +      ER++  L++      R   ++   ++  +  
Sbjct: 238 LPQEIALRLLMRALTLRATEGPV-ELAKAERLLEALRAAVIQPGRLRRTLAGALVTLKQG 296

Query: 315 FLWITRA 321
            L I +A
Sbjct: 297 SLSIVQA 303


>gi|225857820|ref|YP_002739330.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae 70585]
 gi|254789049|sp|C1C992|TILS_STRP7 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225721931|gb|ACO17785.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae 70585]
          Length = 425

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 127/317 (40%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET++MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETIFMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|15899960|ref|NP_344564.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae TIGR4]
 gi|111658620|ref|ZP_01409270.1| hypothetical protein SpneT_02000210 [Streptococcus pneumoniae
           TIGR4]
 gi|61217410|sp|Q97TC5|TILS_STRPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|14971475|gb|AAK74204.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae TIGR4]
 gi|301793336|emb|CBW35695.1| putative ATP-binding PP-loop family protein [Streptococcus
           pneumoniae INV104]
          Length = 425

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 127/317 (40%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET++MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETIFMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|225853622|ref|YP_002735134.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae JJA]
 gi|254789051|sp|C1CH91|TILS_STRZJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|225724064|gb|ACO19917.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Streptococcus
           pneumoniae JJA]
 gi|332199078|gb|EGJ13159.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA47901]
          Length = 425

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVENLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|167619503|ref|ZP_02388134.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis Bt4]
 gi|257138682|ref|ZP_05586944.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis E264]
          Length = 482

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 113/322 (35%), Gaps = 21/322 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++++   + +    A I +A SGG DS  LL       + R  G  +  A+ V H L   
Sbjct: 2   LDAIGVALSAPPDDAPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSAN 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + + ++    L +          +    G+ A+AR+ RY  +        A  +  
Sbjct: 57  ADAWLAHCAETAQALGVRFDAARVDVPRASGQGVEASARDVRYRALETMCARYGARALWL 116

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q 
Sbjct: 117 AQHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVMRVRPLLHLLRAQLERYAQQH 175

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKY 241
            + W +D SN D R+ R  +R  V    L AL      F+D      +   A   L+   
Sbjct: 176 ALRWIDDESNADTRYARNALRVDV----LPALAPHFPGFRDALGRAAQHAAAAQRLLDDL 231

Query: 242 LTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294
             + +R++      +L+      +D      LLR      G    S      M + +   
Sbjct: 232 AAIDLRAVARDDARVLSRDALVVLDDERGANLLRYWMRSLGLPGASAARLAEMMKQLRAA 291

Query: 295 KSGKRGCVSIGRVVIDRRANFL 316
           +      V      +    + +
Sbjct: 292 RDAYALRVDHAGWRLRLYRDDI 313


>gi|149013373|ref|ZP_01834082.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|182682980|ref|YP_001834727.1| mesJ/ycf62 family protein [Streptococcus pneumoniae CGSP14]
 gi|194398531|ref|YP_002036732.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae G54]
 gi|303254912|ref|ZP_07340997.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae BS455]
 gi|303259737|ref|ZP_07345713.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP-BS293]
 gi|303262204|ref|ZP_07348149.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|303265400|ref|ZP_07351307.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS397]
 gi|303266052|ref|ZP_07351946.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS457]
 gi|303268460|ref|ZP_07354254.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS458]
 gi|226695547|sp|B5E578|TILS_STRP4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695549|sp|B2IQZ8|TILS_STRPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|147762896|gb|EDK69844.1| MesJ/Ycf62 family protein [Streptococcus pneumoniae SP19-BS75]
 gi|182628314|gb|ACB89262.1| mesJ/ycf62 family protein [Streptococcus pneumoniae CGSP14]
 gi|194358198|gb|ACF56646.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae G54]
 gi|301800984|emb|CBW33645.1| putative ATP-binding PP-loop family protein [Streptococcus
           pneumoniae INV200]
 gi|302598183|gb|EFL65244.1| tRNA(Ile)-lysidine synthase [Streptococcus pneumoniae BS455]
 gi|302636844|gb|EFL67334.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP14-BS292]
 gi|302639289|gb|EFL69748.1| mesJ/ycf62 family protein [Streptococcus pneumoniae SP-BS293]
 gi|302641961|gb|EFL72314.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS458]
 gi|302644356|gb|EFL74609.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS457]
 gi|302645077|gb|EFL75317.1| mesJ/ycf62 family protein [Streptococcus pneumoniae BS397]
          Length = 425

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNIDVENLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|317968353|ref|ZP_07969743.1| MesJ-like protein [Synechococcus sp. CB0205]
          Length = 327

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 118/312 (37%), Gaps = 26/312 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +L+AVSGG DSM L+  L+ +   +            +H  R  A+ + R +       
Sbjct: 28  PLLLAVSGGQDSMALVGLLNDL---KRLHHWPLQLWHGNHGWRPEAEQQARELQAWAQDQ 84

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +   V  W++ K      A+AR+ RY  +  HA+ +    ++T HT  D+ ETV ++  
Sbjct: 85  GLPIQVDDWESPKRD---EASARDWRYGQLQTHAQRLGCRRVVTGHTASDRSETVLLQLA 141

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G  LS +         + + RP L   R D      Q  +    DPSN+D RF 
Sbjct: 142 RGSHRRG--LSSLRQRRTLSGTIELVRPLLGFSRSDTVQLCEQLGLPIWLDPSNSDPRFS 199

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R R+R  V    L  L        +   +++  +A        +   ++ ++  +     
Sbjct: 200 RNRIRHEV----LPVLEALHPGASERISQLSERLAQEQDGSEQLVDLALGSLQTETAQAQ 255

Query: 261 STLLFYLLRVSA----------AICGGQISLPGYRSMERVMLFLKS---GKRGCVSIGRV 307
             L    L               +    +SL     +E+++  L       +  +S GR 
Sbjct: 256 PALKRRPLSSLTLSNQRLLLHHWLTRQGLSLGNAEQLEQLLHRLPPHCGPGQWDLSRGRS 315

Query: 308 VIDRRANFLWIT 319
            +      +W+ 
Sbjct: 316 -LRWNRELIWLE 326


>gi|227512322|ref|ZP_03942371.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577]
 gi|227084497|gb|EEI19809.1| tRNA(Ile)-lysidine synthetase [Lactobacillus buchneri ATCC 11577]
          Length = 478

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 8/218 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++VAVS G DSM LL  L   L  RS    +     VDHCLRE +K E  ++   CS
Sbjct: 30  DQPVVVAVSTGIDSMTLLYLL-EHLDQRS---PQIIVAYVDHCLREQSKRETVFIQQYCS 85

Query: 79  RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              +      W   + PQ G+ AAARE RY       K    T+++TAH  DD  ET+ M
Sbjct: 86  DHHLKLVQAVWNRKQHPQHGIEAAAREFRYRFFRRVLKENQVTVLLTAHHGDDLAETMLM 145

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  R    +   L G+ +         + RP L   +++I  F    +I W ED +N D 
Sbjct: 146 KLVRGGQVE--SLIGIAEQRPTSFG-SVVRPLLHFSKKEIHQFASSVHIKWFEDETNRDL 202

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
             +R R R  +           ++ F D   ++   + 
Sbjct: 203 TIQRNRFRHQIVPKMKQENPRMLRHFVDYSKQLKTLIE 240


>gi|307729282|ref|YP_003906506.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1003]
 gi|307583817|gb|ADN57215.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1003]
          Length = 482

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 136/410 (33%), Gaps = 36/410 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E+V     +L   A + VA SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LEAVGVAFAALPVHARVAVAFSGGVDSGVLLDAAVRVA-----GASRCMALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +         +  +    +  +     + AAAR+ARY  +     T     +  
Sbjct: 69  ADAWLTHCEAFARERGVEFAARHVEVLRDAGISVEAAARDARYQALDALCATHGIQWLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+      +           RP L   R  I  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-TEFAPAGAAAVRVRPLLHLLRAQIEQYANAR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML------- 237
           ++ W +D SN D R+ R  +R  V      AL +    F+D   +  +  A         
Sbjct: 188 HLRWIDDESNADTRYARNALRHEVTP----ALAIHFPGFRDALARTASHAASAQRLLDEL 243

Query: 238 --IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
             I   L             ++ +D      LLR    + G          +   +  L+
Sbjct: 244 ARIDLELASRDEGRALSHHALIALDDERALNLLRYWMRLQG--FVPASSARLGDALRQLR 301

Query: 296 S------GKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDG--RYQ 343
                  G R  V      +      ++      R   +   L         W G   ++
Sbjct: 302 EVGTSGDGHRLRVDHAGQALRCYRGLVYWEAGDSRDPADETALAAREVSELAWSGEATWR 361

Query: 344 FQNLSDSLI--QIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
                 + +   +     R A   + +P  + QRAL S  S+ GG+ +  
Sbjct: 362 VPQWRGTFVFEALDASHARTAASEAAVPVSVLQRALLSARSRRGGERMRT 411


>gi|167957510|ref|ZP_02544584.1| putative cell-cycle protein [candidate division TM7 single-cell
           isolate TM7c]
          Length = 275

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 113/282 (40%), Gaps = 34/282 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++ A+SGG DS+ LL  L      + +         V+H +R  + ++  +V  + ++  
Sbjct: 2   LIAAISGGVDSIVLLDLLS-----KRYKTSDIIVAHVNHGIRVESSEDADFVRKMSAKYG 56

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +  +        +     AR+ RY  + + +K  NA  I+TAH  DD +ET+ +   R
Sbjct: 57  MRYRQIDLNLGLHAS--EEVARDQRYTFLRKLSKEFNA-KIVTAHHADDIIETIAINLVR 113

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+ +    D         I RP     + D+  +  +  + W ED +N+ D + R
Sbjct: 114 GTGWRGLAVMSAKD---------IYRPLTCFYKNDLLLYAKKNGLEWREDSTNSSDLYLR 164

Query: 202 VRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
            R+R+ ++ ++      L    +    +   +N   A         +           L 
Sbjct: 165 NRLRKRIKTLNPSIKQNLIQLWRNQTKIARDINKETAKFSKNSRYFY-----------LM 213

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           I + +   +LR      G   + P    +  +++ +K+ K G
Sbjct: 214 ISNDVAVEILRNFLLNKGIAQTRP---QLNDILISIKTAKAG 252


>gi|313899743|ref|ZP_07833246.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. HGF2]
 gi|312955358|gb|EFR37023.1| tRNA(Ile)-lysidine synthetase [Clostridium sp. HGF2]
          Length = 406

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 16/256 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     ++ VSGG DSM LL               +     +++  R+TA  ++  V   
Sbjct: 7   LEKGTYIIGVSGGPDSMALLDMCRK-------EGFQLVVAHMNYKKRDTADRDMELVRSY 59

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C+R  I       +         A ARE RY +  E  +   A  ++ AH  DD LET  
Sbjct: 60  CARFHIPFEA-RLQTKPCVGNFQAFAREERYRMYRELLQKYQAAAVLLAHHLDDHLETYL 118

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M  +R   ++ +G+          +   I RP +   + ++ ++  +  + +  D SN  
Sbjct: 119 MAKERGSMKEYLGIQEEACI----MGCTIIRPLMAYSKRELEAYCRENAVPFGIDESNLT 174

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           D + R R+R  +    +  +  K K+     +   N     +       + S     + +
Sbjct: 175 DHYARNRIRHEI----VDRMSEKEKEALMEIISRENMRMQQLRADCRAFLNSWDGSLKKL 230

Query: 257 LNIDSTLLFYLLRVSA 272
             +DS  L  +L    
Sbjct: 231 RVLDSYFLEQVLITWI 246


>gi|170733430|ref|YP_001765377.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia MC0-3]
 gi|169816672|gb|ACA91255.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia MC0-3]
          Length = 473

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 137/396 (34%), Gaps = 27/396 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   AHI +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVSVALSGLPPDAHIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   V +     +RL +A   +     +    G+ A ARE RY  + E  +      +  
Sbjct: 69  ADAWVAHAEGQAARLGVAFESMRVDVPRDSGLGIEATARERRYTALDEMGERHGVAALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+            +++   RP LR  R  +  +  Q 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSIERVRPLLRLLRAQLERYAEQH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAML 237
            ++W +D SN D R+ R  +R  V    L AL +    F+D               +  L
Sbjct: 188 ALTWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 238 IPKYLTVHMRSI-IAISQDIL-NIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294
                 V  R    A+S+D L   D T    LLR      G    S     +M R +   
Sbjct: 244 AELDFAVAARDDGHALSRDALVGFDDTRGANLLRFWMRRLGLPGASAARLANMMRQLRAA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++          +  T    PE    WDG+  +      
Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGTPQPEAALAWDGQEVWHLPGWR 363

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKE 384
            + +     +     VP  +       A +    + 
Sbjct: 364 GTFVFAPADAGSADAVPEALLRGTRLAARARAGGER 399


>gi|237756505|ref|ZP_04585036.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691334|gb|EEP60411.1| tRNA(Ile)-lysidine synthase [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 452

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 120/312 (38%), Gaps = 24/312 (7%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++VR F  +L+     ILVA SGG DS+ L   L       +  +I+     ++H L
Sbjct: 5   KFLKAVRKF--NLIENQDKILVAFSGGPDSLVLTNLLLKFQKTLNILEIQL--AHLNHAL 60

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTIN 118
           R+ +  +  +     S L +   V          + +  +  A R  RY   ++  +  N
Sbjct: 61  RKESDQDQEFCEKFASSLGLKIHVKKVDVKKVAKELKISVEEAGRLERYKFFNKILQKEN 120

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + I T H   D  E++ +   +          G+      + N  I RP     +E+I 
Sbjct: 121 LSKIATGHHLSDLTESIVLWFIQGNKR------GLKGFSPKENN--IIRPLYLITKEEIE 172

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVA 235
            +  +  + +  D SN   ++ R +VR  V  I       L   M           + + 
Sbjct: 173 EYCQKNGLVYLVDQSNFSRKYLRNQVRLDVIPILKKINPDLENSMLNLSQFSYFDESYLD 232

Query: 236 MLIPK-YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
            L  + Y  +  ++++ +S  + N+ + L + LL     I     + P Y+ +  +M  L
Sbjct: 233 KLTEEYYSKLDNKNLLDLSF-VNNLPNALKYRLL--IKWIYENTNTYPSYKQILSLMEIL 289

Query: 295 KSGKRGCVSIGR 306
               +  + I R
Sbjct: 290 DKQGQKEIKISR 301


>gi|307705917|ref|ZP_07642755.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK597]
 gi|307620578|gb|EFN99676.1| tRNA(Ile)-lysidine synthase [Streptococcus mitis SK597]
          Length = 425

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/271 (24%), Positives = 115/271 (42%), Gaps = 33/271 (12%)

Query: 3   LSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +   + +  F++   +  H  +++A+SGG DSM L   L +   +     I+     V+H
Sbjct: 1   MREQDFLNHFLKKGYFKKHTKVVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R  +  E + +  + +   +   +  +          A AR  RY    E  K   AT
Sbjct: 58  KQRVESDWEEKELRKLAAEAELPIYISDFSGEFS----EARARHFRYDFFQEVMKKTGAT 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +  + + I RPFL  +++D    
Sbjct: 114 ALVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGV-IEIIRPFLHFQKKDFPP- 169

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
                I   ED SN  + + R R+R       L  L  +  +F+D  + + N +      
Sbjct: 170 -----IFHFEDTSNKKNHYFRNRIRNS----YLPELEKENPRFRDSILSIGNEI------ 214

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
                +   +AI++   NID   L  LL  S
Sbjct: 215 -----LDYDLAIAELSKNIDVENLEQLLSYS 240


>gi|61216750|sp|Q9RV23|TILS_DEIRA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 582

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/291 (25%), Positives = 116/291 (39%), Gaps = 32/291 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +LV VSGG+DS+GLL AL +V +  +          +DH LR  + D+  +VSD+C+
Sbjct: 38  GRQVLVGVSGGADSVGLLRALLAVGALPA-------VAHLDHALRPESVDDAAWVSDLCA 90

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           RL +   V         ++    L  AAR  RY ++S  AK   A +I+TAHT  DQ ET
Sbjct: 91  RLGVPCEVTRIDVGAVAARRNWNLE-AARRLRYDVLSRAAKHSGAEVILTAHTRRDQAET 149

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V M   R                +      + RP+L   R +I ++L      W ED SN
Sbjct: 150 VLMELLRGEGRI---------RGIPPQRGRVRRPWLNVGRAEIETYLRGLGQDWREDASN 200

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            D RF R  +RR V  + L        +F      +     +       +   +      
Sbjct: 201 ADPRFTRAWLRREVMPVLLT-------RFPAAETALAQVAELGAEDDAALQALAARLTPH 253

Query: 255 DIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
             L      +L   L  +    GG         +  +   L +G+   +++
Sbjct: 254 TPLDRQPPAVLRRWLA-AELRSGGLDFTA--EQLRDLAGALNAGQTRHLTL 301


>gi|306826197|ref|ZP_07459532.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431673|gb|EFM34654.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 425

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 23/257 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     + +++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLQKEYFKKH----SKVVLALSGGLDSMFLFQLLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E   +  +     +   + S+          A ARE RY    +  K   AT 
Sbjct: 59  QRSESDWEENELRKLADAAELPIYITSFSGDFS----EARAREFRYDFFRKIMKEAGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   L+G+ ++ + D  + I RP     ++D    L
Sbjct: 115 LVTAHHADDQVETILMRLIRGSRLR--HLTGIKESQVVD-GIEIIRPLFHFHKKDFPPIL 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMK--KFQDLRVKVNNAVAMLI 238
                   ED +N ++ + R R+R  ++ +++     LK     F         A+  L 
Sbjct: 172 ------HFEDQTNQENTYFRNRIRNRYLPELEKENPRLKSALLDFGREISDYQVAITELS 225

Query: 239 PKYLTVHMRSIIAISQD 255
            +     +  + + SQ 
Sbjct: 226 KQIDVEDLNELFSYSQQ 242


>gi|332071333|gb|EGI81828.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA17545]
          Length = 412

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAEAELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPELEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|256852015|ref|ZP_05557402.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661416|ref|ZP_05862329.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii 115-3-CHN]
 gi|282933687|ref|ZP_06339045.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1]
 gi|297205113|ref|ZP_06922509.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii JV-V16]
 gi|256615427|gb|EEU20617.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547871|gb|EEX23848.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii 115-3-CHN]
 gi|281302177|gb|EFA94421.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1]
 gi|297149691|gb|EFH29988.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii JV-V16]
          Length = 412

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 15/220 (6%)

Query: 6   IESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ ++ F+           I+VA S G DS+ L+  L +         ++      DH +
Sbjct: 1   MDKLKQFLTDYNLDFKNKTIIVACSAGPDSLALVDMLKNW-------PLRLIVAHFDHQI 53

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R+ +  E   +   C +  +   V  W+N++ +T   AAAR+ARY+ +   AK   A  +
Sbjct: 54  RQDSYLETELLEQYCKQNELPLYVKKWENNQNKT--EAAARKARYSFLLALAKEKQADYL 111

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAH  DD LE + ++  R      M        +     + + RP L   + ++  +LL
Sbjct: 112 LTAHHGDDYLENIILKLIRSGDPAEMSSLQAVGQM---EGVKLVRPLLYYSKSELTKYLL 168

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
            +++++  D +N  +   R R+R  +  +        +K 
Sbjct: 169 DKHLAFITDETNLTNENLRNRIRHQLIPLLKEENPTILKN 208


>gi|57233795|ref|YP_182129.1| PP-loop family protein [Dehalococcoides ethenogenes 195]
 gi|57224243|gb|AAW39300.1| PP-loop family protein [Dehalococcoides ethenogenes 195]
          Length = 470

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 129/319 (40%), Gaps = 28/319 (8%)

Query: 7   ESVRFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  +++          IL+AVSGG DS+ +L  +H +  +  F         ++H LR
Sbjct: 3   ERVSRYIKQQGMVSDGDEILLAVSGGPDSVCMLYIMHKLSCEMGF---SLRLAHLNHSLR 59

Query: 64  -ETAKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            E ++ +  YV+++ + L +        V    ++       AARE RYA +   A    
Sbjct: 60  GEESERDAAYVAELAAALGVPLCQQKVSVKAYQAEHHLSTEEAAREMRYAFLCRTAAEYG 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSG-MCDTILYDLNLWISRPFLRCRRED 176
           +  +   HT DD +ETV +   R    +G+ GL   +  T+  +  L + RP L   R +
Sbjct: 120 SAAVAVGHTTDDNIETVMLHLVRGSGTRGLQGLRPVLNRTVAGEGCLRVIRPLLGLSRAE 179

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD--LRVKVNNAV 234
            +++  +  +S  +D +N      R R+R  V    L  L      F++  LR       
Sbjct: 180 TQNYCCEAGLSPVQDVTNQSTDLLRNRIRLEV----LPMLRGINPAFEETILRTAFIAGE 235

Query: 235 AMLIPKYLTVHMRSIIAISQDIL---------NIDSTLLFYLLRVSAAICGGQISLPGYR 285
            M +   +T  M++ + I QD +          +   L   LLR       G +     R
Sbjct: 236 EMALLDEVTSQMKAELVIRQDNVLMIEKIEMQRLHPALKRNLLRQMLEELLGGLKDIEAR 295

Query: 286 SMERVMLFLKSGKRGCVSI 304
            +E ++  L       + +
Sbjct: 296 HIESIIQTLDKPAGRRIDL 314


>gi|116515015|ref|YP_802644.1| hypothetical protein BCc_073 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256869|gb|ABJ90551.1| tRNA(Ile)-lysidine synthetase [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 435

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 156/368 (42%), Gaps = 37/368 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF+  +       +        L+A+SGG DS  L   L  ++  + F +I F  I ++H
Sbjct: 1   MFIKKL------FKKYPTKKKFLLALSGGVDSTVLFYQL--IIWKKKFQEINFRTIHINH 52

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINA 119
            L   AK   ++  ++C + +I   +      K    G+   +R  R  +  +    +  
Sbjct: 53  HLHSHAKLAQKHCINICKKNKIEIKIFDIIIPKKNKYGIEGYSRLERLKIFKK--NILPE 110

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            +++T H  +D  E +++  +R     G  +SGM     YD N+ I RP +  ++E+I  
Sbjct: 111 EILLTGHNMNDLCENIFLSLKRKSGING--ISGMNFYSKYD-NIKIIRPLINIKKENILF 167

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AM 236
           +  ++ I W ED SN +++++R  +R  +    L  +YLK   F    +K  N +     
Sbjct: 168 WAKKKKIKWIEDQSNKNNQYDRNFIRNKI----LSKIYLKWPYFLKNSIKSINLLKKDKK 223

Query: 237 LIPKYLTVHMRSIIAISQ--DILNIDSTLL---FYLLRVSAAICGGQISLPGYRSMERVM 291
           ++  +L+  ++  I + +   ++N D+ +L   F +L++        I  P Y  ++R+ 
Sbjct: 224 ILNYFLSKFLKKNIYLDKTLSLINFDNLILEAKFSILKMWLYNNSQII--PTYYIIKRIY 281

Query: 292 LFLKSGK---RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLS 348
             L   +      +   +  I R    ++     +    ++LY      W   +Q   L 
Sbjct: 282 NELIDNENYFNKKILFQKKEIRRYKKNIYYINPEKKEKKIVLY------WKNIFQKIKLP 335

Query: 349 DSLIQIGP 356
           + L  +  
Sbjct: 336 NKLGYLIA 343


>gi|160916165|ref|ZP_02078372.1| hypothetical protein EUBDOL_02192 [Eubacterium dolichum DSM 3991]
 gi|158431889|gb|EDP10178.1| hypothetical protein EUBDOL_02192 [Eubacterium dolichum DSM 3991]
          Length = 404

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 20/252 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL              +      V++  RE+A  +++ V D C +  I
Sbjct: 11  IIGVSGGPDSMALLDMCRR-------HGVSMVVAHVNYQKRESAARDMQIVQDYCKQYGI 63

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR--SQ 140
           A  V   +N +      A AR+ RYA      +  +A  ++ AH  DD +ET  M+  ++
Sbjct: 64  ACEVY-MQNKQCTYNFQAFARDVRYAFYRSLCEIYHAQGVLLAHQMDDHIETYLMQKETK 122

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R  +  G+   G+       L + + RP L   ++ +  +  Q  + +  D SN  D + 
Sbjct: 123 RLGSYYGIRKKGIV------LGVKVYRPLLTKSKKQLEEYCAQHGVEYGIDESNLSDDYA 176

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R R+R  V D         +    +   K   A+ +    +L+    SI ++     +++
Sbjct: 177 RNRMRHHVVDKMTTKEKQALCDTIEQENKAWQALCLKCQSFLSTWNGSIASLQ----DLE 232

Query: 261 STLLFYLLRVSA 272
             +L  +L    
Sbjct: 233 EEMLMQVLAQFI 244


>gi|55981511|ref|YP_144808.1| cell cycle protein MesJ [Thermus thermophilus HB8]
 gi|61217197|sp|Q5SI38|TILS_THET8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|55772924|dbj|BAD71365.1| probable cell cycle protein MesJ [Thermus thermophilus HB8]
          Length = 507

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 129/321 (40%), Gaps = 30/321 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + + R  +  L     +++AVSGG DS+ L + +            +     +DH LR  
Sbjct: 3   VPAFRERLLRLAPKDPLVLAVSGGGDSVALALLVKEAGR-------QAVVAHLDHGLRPE 55

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATL 121
           +  +  +V  +  RL         + ++        L A ARE RYA +   A+ + A  
Sbjct: 56  SPLDQAFVRALAERLGFPFFTERVEVARIAQARGENLEAVAREVRYAFLHRVAREVGARA 115

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+TAHT DDQ ETV ++  +  A           T + +    + RP L   RE++R++L
Sbjct: 116 ILTAHTLDDQAETVLLQLLQGTA---------RATGIREREGIVVRPLLAHTREELRAYL 166

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLI 238
             R  +W EDP+N D   +R  +R FV  +      A    + +F + R +    +    
Sbjct: 167 RARGEAWREDPTNQDPALDRNFLRLFVFPLLEERFPAAKRALARFAEARAEEEGVLERQA 226

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG- 297
              L    R  +   +    +++ L      +        +   G R   R++L L+   
Sbjct: 227 EARLLPDPRFFVPAFRAAPLLEAPLAVRRRALRR-----LLEKLGLRPEARLVLLLEEAL 281

Query: 298 -KRGCVSIGRVVIDRRANFLW 317
             R     G V+  R+   L+
Sbjct: 282 RGRPQTLPGGVLARRKGGTLF 302


>gi|85713119|ref|ZP_01044153.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica
           OS145]
 gi|85693067|gb|EAQ31031.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica
           OS145]
          Length = 447

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 123/320 (38%), Gaps = 26/320 (8%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            LV    ++VA+ GG+DS  +L  L+         + ++ AI +DH     +    + + 
Sbjct: 18  HLVPGQQLVVALGGGADSQTVLDCLNRFRQAN--PQYEYLAIHLDHHFHPQSPAWAKTIK 75

Query: 75  DVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                  +A H        K +    A  RE RY  ++E   T +  +I+     +DQ+E
Sbjct: 76  GSVESYGMASHFEDLIFIEKNRVSKEAMGRERRYQRLAEL--TADNAIILLGQHRNDQIE 133

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  ++ +R    +G  L+ M +   +     + RP L   ++ I  +  +  ++W ED +
Sbjct: 134 TFLLQLKRGSGPRG--LASMAEVQPFVGQRKLVRPLLEVSKQAILKYAHEHQLTWIEDNT 191

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSII 250
           N D R ER  +R  V    +  L  +  +F    ++     A    L+ + L   + +  
Sbjct: 192 NYDTRIERNYLRHKV----IPQLEQRWPQFGQSVLRSAALCAEQDALLDELLADKLNNAW 247

Query: 251 AISQ---------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGK 298
                        ++ +    L    +R       G   +P    + ++    L   +  
Sbjct: 248 CSHAWLNIGLSLTELAHFSEPLQRAAIRYWLTHQTGCERMPSQAQLHQICQQALSAANDA 307

Query: 299 RGCVSIGRVVIDRRANFLWI 318
           +  V++    + R AN LW 
Sbjct: 308 KVAVNLASGCVYRFANALWW 327


>gi|284051178|ref|ZP_06381388.1| tRNA(Ile)-lysidine synthetase [Arthrospira platensis str. Paraca]
          Length = 348

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 126/330 (38%), Gaps = 26/330 (7%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             V   +RS   L     +LVAVSGG DSM L+  L  +    ++   + +    DH  R
Sbjct: 16  AKVHRSLRSRNLLPCGEALLVAVSGGQDSMCLIRLLLDLQGKWNW---RMAIAHCDHQWR 72

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             +     Y+ ++    ++    ++           AAARE RY ++ E A+T N   ++
Sbjct: 73  RDSVANADYIEELGKIWQVPCYRLTAPQIPKT---EAAAREWRYQVLGEIAQTDNYGYVV 129

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCRREDIRSF 180
           T HT  D+ ET+     R     G+        I          + RP L   R++   F
Sbjct: 130 TGHTKSDRAETLLYNLIRGSGADGLTSLVWSRPIFGRETETKPILVRPLLEITRQETGEF 189

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIP 239
             QR++   ED +NTD  + R R+R  +     +    K+++        +   V  L  
Sbjct: 190 CQQRDLQIWEDSTNTDVSYARNRIRHQLIPELANKFNPKVEQALAQTAELLRADVEYLEQ 249

Query: 240 KYLTVHMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           +   ++  ++     +         + +    L   ++R        + +   +  +E++
Sbjct: 250 EADELYSLAMAPAPCNNSYGVNRHKLKSAPLALQRRVMRRFLEEVLRKGT--NFEQVEKL 307

Query: 291 --MLFLKSGKRGCVSIGRVVIDRRANFLWI 318
             +++  +  +     G  +      ++W+
Sbjct: 308 TRLIYAPNRSQSDPFPGGAIAQVEGEWIWL 337


>gi|296158958|ref|ZP_06841786.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. Ch1-1]
 gi|295890833|gb|EFG70623.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. Ch1-1]
          Length = 476

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 136/411 (33%), Gaps = 28/411 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE+V F +  L   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  IEAVGFSLSRLSATARIAIAFSGGVDSSVLLDAAVRVA-----GASRCVALHVHHGLSAH 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +         +  +      S+     + AAAR+ARY ++     +     +  
Sbjct: 69  ADAWLAHCDAFARERGVEFAAERVVVSRDTGVSVEAAARDARYRVLEGMCASRGVATLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+      + +    +    RP L   R  +  +  +R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PEYLPAKASATRVRPLLHLLRAQLEQYASER 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            + W +D SN D R+ R  +R  V    L   +   +           +   L+ +   +
Sbjct: 188 ALRWIDDESNADTRYARNALRHDVMP-ALAVHFPGFRDALARTAAHAASAQRLLDELARI 246

Query: 245 HMRSIIAISQDILNIDST----------LLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
            M +        L+ D+           L+ Y +R         + L       R +   
Sbjct: 247 DMEATSRDEGRALSHDALLALDDDRALNLMRYWMRTLGLAAASSVRLGDALRQLREIGAA 306

Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348
             G    V      +      ++          +   L         W G   ++     
Sbjct: 307 GEGHALRVDHAGHALRSYRGLVYWESGDSSEPADETALAPRAVSELAWQGESVWRLPQWR 366

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399
            + +     +      P  +P  + + A+ S  S+ GG+ +    +R    
Sbjct: 367 GTFVFADAAAGE----PDAMPISLLRGAVLSARSRSGGERMRTGAARNAPG 413


>gi|93005006|ref|YP_579443.1| tRNA(Ile)-lysidine synthetase-like [Psychrobacter cryohalolentis
           K5]
 gi|92392684|gb|ABE73959.1| tRNA(Ile)-lysidine synthetase-like [Psychrobacter cryohalolentis
           K5]
          Length = 535

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 121/320 (37%), Gaps = 27/320 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I +A SGG DS+ L      +        +    + V+H L+  +     +V++ 
Sbjct: 38  LQGRRIWLACSGGRDSLALAALCVQLYQQGRLPFLP-QLLHVNHGLQADSAIWAAHVANW 96

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               +I  +++    +        AAR+ARY ++   A+     +++ AH  DDQ ETV 
Sbjct: 97  AKAQKIPCTILQAHVNGHD---EQAARQARYDVMR--AQLNQDDVLLLAHHADDQAETVL 151

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           MR  +     G+           D +  I  RP+L  +R  I S+  +  + + +DP+N 
Sbjct: 152 MRLIQGAGVNGLSGMHPWRVQTQDAHRIIVWRPWLIVQRASISSYAKRLKLPYIDDPTND 211

Query: 196 DDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
                R  +RR +  +        +  +    +   D ++ V    A  + +   + ++ 
Sbjct: 212 GGDNVRSGLRRDIMPVLAKYNPNVIDNIARSAQLLSDAQLTVKAQAAEDLKQTEVISLQL 271

Query: 249 IIAISQDILNIDSTLLFYLLR---VSAAICGGQISLPGYRSMER--VMLFLKSGKRGCVS 303
             A  Q +LNID      L R   +     G    LP  + +    + L  +        
Sbjct: 272 PSA--QRVLNIDELQKLPLYRQRQLLHYWLGQDEPLPPAKQLVDDVLSLSQRHDHDHQTE 329

Query: 304 I---GRVV---IDRRANFLW 317
           +   GR     I R    L+
Sbjct: 330 LFWQGRKQSYTIRRYRQQLY 349


>gi|46199478|ref|YP_005145.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
 gi|61217297|sp|Q72IF6|TILS_THET2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|46197104|gb|AAS81518.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus
           HB27]
          Length = 507

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 129/321 (40%), Gaps = 30/321 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + + R  +  L     +++AVSGG DS+ L + +            +     +DH LR  
Sbjct: 3   VPAFRERLLRLAPKDPLVLAVSGGGDSVALALLVKEAGR-------QAVVAHLDHGLRPE 55

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATL 121
           +  +  +V  +  RL         + ++        L A ARE RYA +   A+ + A  
Sbjct: 56  SPLDQAFVRALAERLGFPFFTERVEVARIAQARGENLEAVAREVRYAFLHRVAREVGARA 115

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+TAHT DDQ ETV ++  +  A           T + +    + RP L   RE++R++L
Sbjct: 116 ILTAHTLDDQAETVLLQLLQGTA---------RATGIREREGIVVRPLLAHTREELRAYL 166

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLI 238
             R  +W EDP+N D   +R  +R FV  +      A    + +F + R +    +    
Sbjct: 167 RARGEAWREDPTNQDPALDRNFLRLFVFPLLEERFPAAKRALARFAEARAEEEGVLERQA 226

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG- 297
              L    R  +   +    +++ L      +        +   G R   R++L L+   
Sbjct: 227 EARLLPDPRFFVPAFRAAPLLEAPLAVRRRALRR-----LLEKLGLRPEARLVLLLEEAL 281

Query: 298 -KRGCVSIGRVVIDRRANFLW 317
             R     G V+  R+   L+
Sbjct: 282 RGRPQTLPGGVLARRKGGTLF 302


>gi|126640676|ref|YP_001083660.1| cell cycle protein [Acinetobacter baumannii ATCC 17978]
 gi|126386560|gb|ABO11058.1| cell cycle protein [Acinetobacter baumannii ATCC 17978]
          Length = 427

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 132/324 (40%), Gaps = 27/324 (8%)

Query: 31  DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90
           DSM LL  +  +   +        AI +DH L++ + +    V+   + L I + +   +
Sbjct: 2   DSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQ 55

Query: 91  NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150
            +     L A AR+ARY    +H +     +++ AH   DQ ETV +R        G+  
Sbjct: 56  IAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAA 111

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
               D   Y  ++ I RPFL   RE I  +  Q  + + +DP N D  ++RV  R  +  
Sbjct: 112 MQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCREALWP 168

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT---VHMRSIIAISQDIL-NIDSTLLFY 266
             L + + KM++       +    + ++ + L     +  S   +    L  +       
Sbjct: 169 -FLTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSADYLDLTKLYELSFARQRQ 227

Query: 267 LLRVSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLW-ITRA- 321
           LL  SA + G     P +  +ER+   ++  KS  +  +   +    R  N L+ ++R  
Sbjct: 228 LL--SAWMKGQGQYRPAFEMVERLRTEVIESKSDAQAALHWNQFYYVRYQNILYRLSREV 285

Query: 322 --VRNLPTLILYPEETTVWDGRYQ 343
                L  ++   E +   + R+Q
Sbjct: 286 YLAETLNPVVAELEHSFKLEERWQ 309


>gi|169351463|ref|ZP_02868401.1| hypothetical protein CLOSPI_02243 [Clostridium spiroforme DSM 1552]
 gi|169291685|gb|EDS73818.1| hypothetical protein CLOSPI_02243 [Clostridium spiroforme DSM 1552]
          Length = 414

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/242 (24%), Positives = 101/242 (41%), Gaps = 16/242 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V VSGG DSM LL  +            +     V++ LR  +  + + V D C    I
Sbjct: 15  VVGVSGGCDSMALLDIMQK-------KGYRMVVCHVNYHLRNDSDLDQKTVEDYCKMHDI 67

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           A  V    +    +      ARE RY    E A   N   ++ AH  DD +E + M+ QR
Sbjct: 68  ACFVKEIDSKLYSKENFQMQARELRYQFYREIANKYNTNEVVLAHHLDDVIENIVMQLQR 127

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
           +  +  +G+  + D       + + RPFL  R++ +R++    N+ + +D +N +  F R
Sbjct: 128 NNTKGYLGIKDVSDVF----GVVVIRPFLEVRKQALRNYCHDYNVFYRDDYTNFETDFTR 183

Query: 202 VRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
             VR        +  +  L ++ K   +  +K    V + I +Y    M     I  ++L
Sbjct: 184 DFVRNVTLKKYSEKQIEELLIQAKHHNERYLKNLELVQVYIHQYHQKEMIDYHLIPDNLL 243

Query: 258 NI 259
             
Sbjct: 244 EC 245


>gi|167754461|ref|ZP_02426588.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216]
 gi|167659086|gb|EDS03216.1| hypothetical protein ALIPUT_02757 [Alistipes putredinis DSM 17216]
          Length = 448

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/327 (18%), Positives = 125/327 (38%), Gaps = 33/327 (10%)

Query: 3   LSPIESVRFFVRS--LVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ +++ + ++R   L  P   IL+ VSGG DSM +L               +      +
Sbjct: 1   MNLLDNFQRYIRRNELAAPEDFILLTVSGGVDSMVMLSLFVR-------SGYRVGVAHCN 53

Query: 60  HCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHA 114
             LR   ++++   V     +  +      +            +  AAR  RYA   E +
Sbjct: 54  FQLRGVESEEDEELVRREAEKYGVPWYNKRFDTKGEMERTGESMEMAARRLRYAWFDELS 113

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +    T++  AH  DD +ET ++   R    +G+       T +      + RP +   R
Sbjct: 114 REHGYTVVAIAHHIDDSIETFFINLLRGTGLRGL-------TGITTHAGKLIRPLMFASR 166

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLR 227
           +DI  + + ++I + ED SN   ++ R ++R       + +       +   + +  D +
Sbjct: 167 KDILEYAVAQHIPYREDSSNRSTKYLRNKIRLGLVPRIKEISPKFTDLMRQNIGRLTDAQ 226

Query: 228 VKVNNAVAMLIPKYLTVHMR-SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
           + +N+ +  +  + +T       I I +         + + L  S     G +S    R+
Sbjct: 227 LFINHGIQRIREEVITTENGIDTIHIDRIDRAFPLNFVIFELLNSTYSFKGDVSDALVRA 286

Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRA 313
           +E+      +GKR         IDR  
Sbjct: 287 LEQ---NSGTGKRFYSKSHVAYIDRGR 310


>gi|332198875|gb|EGJ12957.1| tRNA(Ile)-lysidine synthetase [Streptococcus pneumoniae GA47368]
          Length = 412

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 126/317 (39%), Gaps = 25/317 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     A  ++A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLKKGYFKKH----AKAVLALSGGLDSMFLFKVLSTYQKELE---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E + +  + +   +   + ++          A AR  RY    E  K   AT 
Sbjct: 59  QRIESDWEEKELRKLAAETELPIYISNFSGEFS----EARARNFRYDFFQEVMKKTGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   LSG+ +  +    + I RPFL  +++D  S  
Sbjct: 115 LVTAHHADDQVETILMRLIRGTRLRY--LSGIKEKQVVGE-IEIIRPFLHFQKKDFPS-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN ++ + R R+R       L  L  +  +F+D  + + N +       
Sbjct: 170 ----IFHFEDTSNQENHYFRNRIRNS----YLPKLEKENPRFRDAILGIGNEILDYDLAI 221

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +     +   Q + +   +    LL+          ++   +  +++++      +  
Sbjct: 222 AELSNNINVEDLQQLFSYSESTQRVLLQTYLNRFPDLNLTKAQFAEVQQILKSKSQYRHP 281

Query: 301 CVSIGRVVIDRRANFLW 317
             +   ++ + +   + 
Sbjct: 282 IKNGYELIKEYQQFQIC 298


>gi|193212239|ref|YP_001998192.1| tRNA(Ile)-lysidine synthetase [Chlorobaculum parvum NCIB 8327]
 gi|193085716|gb|ACF10992.1| tRNA(Ile)-lysidine synthetase [Chlorobaculum parvum NCIB 8327]
          Length = 334

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 110/298 (36%), Gaps = 28/298 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +LVAVSGG DSM     LH +++      ++      +  LR E +  +  +V   C+ L
Sbjct: 24  VLVAVSGGPDSM---ALLHLLVAAAPVLHLRLGVAHCNFGLRGEESDGDEAFVRYECAGL 80

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V  +         +  +   AR  RY    E  +     LI T H   D  ET+ 
Sbjct: 81  GLDFHVRRFDTKAVATTWKKSIEETARLLRYDFFEELCREKGYELIATGHHSGDNAETML 140

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
               R  A  G+         +      + RP +   R++I S+L +++I+W  D +N  
Sbjct: 141 FNLFRGTAASGL-------RGIRMRQGRLIRPLIPFSRQEIVSYLDEKSIAWRTDRTNAG 193

Query: 197 DRFERVRVRRFVRDIDLHALYLKM--------KKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
              +R  +R  V  +      LK+        +   +L   +   +  LI +   +    
Sbjct: 194 LEHDRNYIRNRVIPVIEERFSLKLTASLQRVAEHAGELEEFMERHIDRLIEERPGLDPAG 253

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLKSGKRGCVSIG 305
                  +L +       L++    + G    LP   R + R+   L+S     V  G
Sbjct: 254 GKLHVGSLLELSRFERKALIKRVLQMRG----LPVESRVLSRIAGLLESQPGRRVHAG 307


>gi|316932669|ref|YP_004107651.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1]
 gi|315600383|gb|ADU42918.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris DX-1]
          Length = 341

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 135/327 (41%), Gaps = 16/327 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+   F      PA I++AVSGG DS+ L+  +         G    S ++VDH L
Sbjct: 9   VSATEARGLFGDWKAAPA-IVLAVSGGPDSLALMWLVARWRKALKRGP-SLSVVTVDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V  + + L + H  + W+  KP +G+ AAAR+ARY L++E A+   AT I
Sbjct: 67  RAEAAREARAVKRLATSLDLPHRTLRWRGDKPASGIQAAARQARYRLLAEAARRAGATHI 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MTAHT DDQ ETV MR  R     G+             ++ + RP L   +  + + L 
Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGIAGLAAM---SRQTARDDIVLVRPLLDVPKARLLATLA 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAVAMLI 238
           +  I +  DPSN D RF R R+R  +  +           ++             +    
Sbjct: 184 KARIDFATDPSNADPRFARPRLRELMPLLAAEGCDARSLARLASRAARADAALERMTDGA 243

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS--LPGYRSMERVMLFLKS 296
            +YL +          D     +      +R+   +   Q     P    +E ++  L+S
Sbjct: 244 ERYLELLNAEPRRRGVDAAAFTALPAEIRIRLLMRVLSSQGYEGPPQLGKVETLVTALES 303

Query: 297 GKRGCV-----SIGRVVIDRRANFLWI 318
                V     ++   V+      L I
Sbjct: 304 AMSEAVPRLKQTLAGAVVTLGGERLVI 330


>gi|196230473|ref|ZP_03129335.1| tRNA(Ile)-lysidine synthetase [Chthoniobacter flavus Ellin428]
 gi|196225403|gb|EDY19911.1| tRNA(Ile)-lysidine synthetase [Chthoniobacter flavus Ellin428]
          Length = 311

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/313 (24%), Positives = 127/313 (40%), Gaps = 15/313 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                L+ VSGG DS+ LL  LH+       G  +     +DH LR  +  + ++V  + 
Sbjct: 7   PEERCLIGVSGGRDSVALLHQLHAA------GFRELIVCHLDHALRAESVADAQFVEKLA 60

Query: 78  SRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +L  A       V+    + +  L   AREAR +  +  A+  +   +  AH  DDQ+E
Sbjct: 61  RKLDYAFVLQREDVATLAKQRKKSLETTAREARISFFTHVAREHDCPRLFLAHHADDQVE 120

Query: 134 TVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T+     R     G+  +S +    +  + L ISRPFL   RE+I +++L+  +S+ ED 
Sbjct: 121 TLLFNLFRGAGAAGLAGMSALSTRTIDGVTLQISRPFLGTWREEIEAYILRHKLSFVEDA 180

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN+D +F R R+R  +  +   A    +++      ++  A   L    L      +   
Sbjct: 181 SNSDRKFTRNRLRHDIIPVLEQAFGRDIRRSIWRSAEILRAEDDLFADLLGNTPPELSV- 239

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
              +      +    LR    + G      G+  +E V   LK G             RR
Sbjct: 240 -PALAAEPIAIQRRRLRAWLKLHGVAD--IGFEEVEAVRALLKGGTAKANLPRGWHARRR 296

Query: 313 ANFLWITRAVRNL 325
           A  L++      L
Sbjct: 297 AKRLFLEPPRNGL 309


>gi|256370688|ref|YP_003108513.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009480|gb|ACU52840.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 438

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 18/212 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           ++    I VAVS G DSM +L  L    +           I  +  LR + +  +  ++ 
Sbjct: 16  ILKNKKIYVAVSSGLDSMVMLDLLLKSCNH------PIGVIHCNFNLRGDDSDKDEFFIQ 69

Query: 75  DVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + C +  +     ++K      K +  +   AR+ RY              I   H  DD
Sbjct: 70  EFCLKNNLNFKSKNFKTPTIRRKTKFSIQMIARKLRYDWFKFLLNNSYCDYIALGHHLDD 129

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET ++   R     G G+ G+     +  N  I RP     +++IRS+  + NI W E
Sbjct: 130 SIETFFINIIR-----GTGIKGLIGINNFKKN--IIRPLFLFSKKEIRSYAKENNIHWRE 182

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           D SN D ++ R ++R F++ I  +  Y   KK
Sbjct: 183 DISNNDLKYLRNKIRFFLKPILNYKFYNGFKK 214


>gi|237735418|ref|ZP_04565899.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381163|gb|EEO31254.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 590

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 107/279 (38%), Gaps = 18/279 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL  ++           +     V++ LRE +  + + V   C R  +
Sbjct: 6   ILGVSGGCDSMALLDMMNQ-------AGYQIIVCHVNYHLREDSDLDQQTVEAYCHRYDL 58

Query: 83  AHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              V                AR  RY    E         ++ AH  +D +E + M+ QR
Sbjct: 59  PCYVREIDKQVYGPDNFQDQARRLRYQFYLEIGMKYQTQKVVLAHHQNDVIENIVMQLQR 118

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              +  +G+  + +       + + RP L  R++ +R +    N+ + +D +N    F R
Sbjct: 119 HNTKGYLGIQEISEVF----GVTVIRPCLAVRKQFLRDYCHGHNVEYRDDYTNFQTEFTR 174

Query: 202 VRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
             VR   ++D D   +   +K  Q+   +  + +  L       H ++ I  +     + 
Sbjct: 175 DYVRNVTLKDYDEEKIEKLLKWAQEHNQRYASKLKQLQIYLDLYHQKNKIDYTCIPKELL 234

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
              ++ +L+           L     ++ ++  +KS K 
Sbjct: 235 DGFIYEILKEVVY-----PPLISNALIKEIIKQIKSNKP 268


>gi|167754850|ref|ZP_02426977.1| hypothetical protein CLORAM_00354 [Clostridium ramosum DSM 1402]
 gi|167704900|gb|EDS19479.1| hypothetical protein CLORAM_00354 [Clostridium ramosum DSM 1402]
          Length = 599

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 107/279 (38%), Gaps = 18/279 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL  ++           +     V++ LRE +  + + V   C R  +
Sbjct: 15  ILGVSGGCDSMALLDMMNQ-------AGYQIIVCHVNYHLREDSDLDQQTVEAYCHRYDL 67

Query: 83  AHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              V                AR  RY    E         ++ AH  +D +E + M+ QR
Sbjct: 68  PCYVREIDKQVYGPDNFQDQARRLRYQFYLEIGMKYQTQKVVLAHHQNDVIENIVMQLQR 127

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
              +  +G+  + +       + + RP L  R++ +R +    N+ + +D +N    F R
Sbjct: 128 HNTKGYLGIQEISEVF----GVTVIRPCLAVRKQFLRDYCHGHNVEYRDDYTNFQTEFTR 183

Query: 202 VRVRR-FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
             VR   ++D D   +   +K  Q+   +  + +  L       H ++ I  +     + 
Sbjct: 184 DYVRNVTLKDYDEEKIEKLLKWAQEHNQRYASKLKQLQIYLDLYHQKNKIDYTCIPKELL 243

Query: 261 STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
              ++ +L+           L     ++ ++  +KS K 
Sbjct: 244 DGFIYEILKEVVY-----PPLISNALIKEIIKQIKSNKP 277


>gi|260889219|ref|ZP_05900482.1| tRNA(Ile)-lysidine synthase [Leptotrichia hofstadii F0254]
 gi|260861279|gb|EEX75779.1| tRNA(Ile)-lysidine synthase [Leptotrichia hofstadii F0254]
          Length = 450

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 17/223 (7%)

Query: 6   IESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           IE +R   +  +      IL+A SGG DS+ L   L  +   ++   ++ S   ++H LR
Sbjct: 5   IEKIRGSHKKKLISEKDKILIAFSGGPDSVFLYHLLDLM---KNMISLEISIAYINHNLR 61

Query: 64  ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
              +++++++++  S+  + H +    V    ++ +  +  AARE RY  I    K I  
Sbjct: 62  YDVENDLKFINEFASKNNVNHYIESINVKKYAAENKKSVELAARELRYETIENIRKKIGY 121

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I T H  DD +ET   R  R  +    GL G+           I RP L   + +I S
Sbjct: 122 NKIATGHNLDDNVETFIFRLLRGTSV--TGLKGIPRVRE-----NIVRPILDFEKSEILS 174

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           FL  +N  +  D +N ++ + R  +R  +   D   +    +K
Sbjct: 175 FLRSKNYQYLVDYTNNENDYTRNFIRNKIFP-DFEKINPAFRK 216


>gi|145220203|ref|YP_001130912.1| tRNA(Ile)-lysidine synthetase [Prosthecochloris vibrioformis DSM
           265]
 gi|145206367|gb|ABP37410.1| tRNA(Ile)-lysidine synthetase [Chlorobium phaeovibrioides DSM 265]
          Length = 329

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 126/330 (38%), Gaps = 31/330 (9%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63
           +E +R  VR LV     +LVAVSGG DSM LL    +V         +      +  LR 
Sbjct: 9   LEQIR--VRRLVMDGEPLLVAVSGGPDSMALLSLFLAVQP---VLHCRLGVAHCNFGLRG 63

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINA 119
             +  +  +V + C RL +   V  +       + +  +  +AR  RY       K+   
Sbjct: 64  PDSLADEAFVREACRRLGLECFVARFDTELYCREHRLSIEESARTLRYDYFGRLMKSEGF 123

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T + T H   D  ET+     R  ++  +         +   +  I RP L   + DI  
Sbjct: 124 TKVATGHHVADNAETILFNLFRGTSQPSL-------RGIRSRHGSIIRPMLLLHKADILG 176

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM--------KKFQDLRVKVN 231
           +L ++ + +  D SN  D  +R  +R  V  + L     K+        ++  +L   + 
Sbjct: 177 YLREKGMRYRIDRSNESDSHDRNFIRNRVIPLLLERFPDKLMPSLQRLSEQSGELEEFLE 236

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
           +A+  LI +   +           +  +       +L+ +    G  +       ++R++
Sbjct: 237 SAMDGLIEREPGLQPAQGWLDVAALKTLTVFEQKEVLKRALREHGYSVDA---VLLQRLV 293

Query: 292 LFL--KSGKRGCVSIGRVVIDRRANFLWIT 319
             L  + G+R  +  G  V+ +     +++
Sbjct: 294 DLLTTQPGRRVMLEGGGEVVWKDRRLCFLS 323


>gi|114320993|ref|YP_742676.1| tRNA(Ile)-lysidine synthetase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311407|sp|Q0A7K1|TILS_ALHEH RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|114227387|gb|ABI57186.1| tRNA(Ile)-lysidine synthetase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 445

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 128/317 (40%), Gaps = 17/317 (5%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++   +  L   +   VA SGG DS  LL  + ++ + R    +   A+ + H L+  A
Sbjct: 10  ETLARHLAVLGPASGYCVAYSGGLDSTVLLHLMAALSAARE---LPLRAVHIHHGLQPQA 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
                +     + L +   V+  +  +    GL AAAR+ARYA ++ H ++     ++TA
Sbjct: 67  DAWAEHCRQQAAALGVDCLVLPVEVRRDSGEGLEAAARQARYAALASHLQS--GEALLTA 124

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ ETV +   R    +G  L+GM           + RP L   RE +R++     
Sbjct: 125 HHADDQAETVLLHLLRGSGPRG--LAGMRAQRPLGRG-RLLRPLLPWPRERLRAYGDTHA 181

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYL 242
           + W EDPSN     +R  +R  +  +         ++      +   A   +  L  + L
Sbjct: 182 LCWVEDPSNAHVAHDRNWLRHTLWPVLTQRWPDASRRVGRAAGEQAEAEALLRELAGEDL 241

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER-VMLFLKSG--KR 299
             H          +  +       L+R    + G  +  P    +E+ +   +++G  ++
Sbjct: 242 ARHPPGPGLAVSVLARLSPARARNLVRHWLLMSG--LRPPPRARLEQGLADLIRAGRDRQ 299

Query: 300 GCVSIGRVVIDRRANFL 316
             ++     + R  + +
Sbjct: 300 PVLTWPEGELRRYRDRI 316


>gi|219685944|ref|ZP_03540742.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii Far04]
 gi|219672518|gb|EED29559.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii Far04]
          Length = 440

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 24/270 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R   +  
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIVAFYFAHFIRSDNEQN 67

Query: 69  -EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  V      +  ++ +    +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+       + +  +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NIS+  D +N  D + R RVR  +            K  + +       V       
Sbjct: 181 SLNNISFFVDSTNAQDLYLRNRVRNNLLPSIEKIFKGYQKCLKRISEFSKEFVDYFEKDE 240

Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLL 268
                +     S D+   LN    L+F L+
Sbjct: 241 FFPVEKGKYYYSFDLKTFLNFPKYLVFRLI 270


>gi|119504829|ref|ZP_01626907.1| cell cycle protein [marine gamma proteobacterium HTCC2080]
 gi|119459434|gb|EAW40531.1| cell cycle protein [marine gamma proteobacterium HTCC2080]
          Length = 426

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 131/331 (39%), Gaps = 25/331 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRS-FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           + +SGG DS+ LL   H+ L       +    A+ + H L   A   V    DVC +L I
Sbjct: 2   LGLSGGCDSIALLHLAHAWLDHVGPERRPALRAVHIHHGLAPEADAWVEVCHDVCQQLSI 61

Query: 83  AHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           A SV      +    G+ AAAR ARY++  +  K+    +++ AH  DDQ+ETV  R  R
Sbjct: 62  ALSVYRVTPVTDEGKGIEAAARTARYSVYRQELKS--GEVLLLAHHADDQVETVLQRLLR 119

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               KG   +GM         + +SRP L   R  I+ +   R +++  D SN D RF+R
Sbjct: 120 GTGPKG--FAGMPRRRELGQGV-LSRPLLGVARSVIKRWADNRELAYVIDASNQDMRFDR 176

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI----- 256
             +R  +    L  L  +   +++   +     + L+ ++    +     +  +      
Sbjct: 177 GFLRTEI----LPKLEQRWPGYRESIRRATELQSGLLRQHNAQPLALTANVMGEPAMAYH 232

Query: 257 LNIDSTLLFYLLRVSA--AICGGQISLPGYRSMERVMLF---LKSGKRGCVSIGRVVIDR 311
           L   +     +L  S    +    + +P    +   +      ++ +   V +GR ++  
Sbjct: 233 LKDSAQDSRGVLAYSLHRWLSELLLDVPAAARLTEFVRQCYEARTDRCPEVDVGRGMLRA 292

Query: 312 RANFL----WITRAVRNLPTLILYPEETTVW 338
               +    +     +   TL+        W
Sbjct: 293 WRGLICFTPYFVEEAQLSATLVAGQVYEGSW 323


>gi|222152147|ref|YP_002561307.1| hypothetical protein MCCL_1904 [Macrococcus caseolyticus JCSC5402]
 gi|222121276|dbj|BAH18611.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 403

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 16/223 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +I VAVSGG DSM LL         RS    +   + V+H LR+ +++E   +   C+  
Sbjct: 10  NIGVAVSGGVDSMVLLD-----KIRRSGCFKQLYVLHVNHQLRDVSREEQEMIQRYCTSY 64

Query: 81  RIAHSVVSWKNS--KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            I   V +           +   AR+ RY      AK  + + ++TAH  DDQ+ET++ R
Sbjct: 65  GIELIVYTIPKGTFDLSKSIQHKARKLRYDFFESVAKEKDLSWVLTAHHKDDQMETIFFR 124

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
              +         GM   ++    +   +P L   + ++  +  +  + + ED SN + +
Sbjct: 125 LLSNRFT--FQPPGMQ--MIVKGAVTYGKPLLNYSKSELYQYAERERVPFMEDESNEEVK 180

Query: 199 FERVRVRRF-VRDIDLHAL----YLKMKKFQDLRVKVNNAVAM 236
           + R  +R   +  +D   L     L +  + D    +    AM
Sbjct: 181 YTRNYIRNEIIAKLDEAKLSKENLLHVAHYIDTAQSLVRQCAM 223


>gi|255066803|ref|ZP_05318658.1| tRNA(Ile)-lysidine synthase [Neisseria sicca ATCC 29256]
 gi|255048878|gb|EET44342.1| tRNA(Ile)-lysidine synthase [Neisseria sicca ATCC 29256]
          Length = 399

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 99/283 (34%), Gaps = 13/283 (4%)

Query: 42  VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA 101
           +   R    +   A+ V H L   A D + + + +C    +    V  +  K   G+ AA
Sbjct: 2   LACLREELGLNVHALHVHHGLSRNADDWLGFCTRLCQEWNVPFRSVKVEVKKDGLGIEAA 61

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
           AR+ARY   S       + +I  AH  DDQ+ET  + + R    K   L+ M      D 
Sbjct: 62  ARKARYQAFS----DDPSGIIALAHHQDDQIETFMLAAVRGGGIK--ALAAMPQWRKLDE 115

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
              I RP L   R+++ S+    N+   ED SN D  F R  +R     +    +    +
Sbjct: 116 ETQIWRPLLTFSRKELESYAAACNLPNIEDESNADTAFLRNWMRYEALPVWRERIPNFDR 175

Query: 222 KFQDLRVKVNNAVAMLIP----KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277
                   +   +A+L       Y  V       +S+            +L         
Sbjct: 176 HVCANIRSLQTDLAILDEVVEADYQAVCQSGRFQVSRW-QTFSEARRSRIL--WRFFKEN 232

Query: 278 QISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
           +I     R +      L   +      G   +    +FL+I +
Sbjct: 233 EIVESSPRKLADFARILLEAETAQWQFGETSVCLYRDFLFILK 275


>gi|187928104|ref|YP_001898591.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12J]
 gi|187724994|gb|ACD26159.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12J]
          Length = 472

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 138/391 (35%), Gaps = 21/391 (5%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F V   +    + +A+SGG DS  LL A  +        +++  A+ + H L+  A    
Sbjct: 30  FVVSGEIETPTVAIALSGGRDSAALLHACAAWRDA--GARVQLVALHIHHGLQADADVWE 87

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                +     +A              G+  AAREARYA +        A++++TAH  D
Sbjct: 88  CACQRMAQAAGVAFHARRVYVEIDAGQGVEEAAREARYAALEALCAQTGASILLTAHHQD 147

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV ++  R     G+    M         + + RP++   R +I  +     + W 
Sbjct: 148 DQAETVLLQLMRGAGLDGLAAMPMA----RAGAVTLLRPWVDAPRSEIELYAHAHALCWV 203

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           EDPSNTD R+ R  +R  +  +  H  A    + +           +  +    LT    
Sbjct: 204 EDPSNTDARYARNALRPLLAGMADHFPAYREALSRSAAHLADAAALIDEIAQADLTRIAS 263

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVSIGR 306
           +       ++ + +     +LR      G +         +   ++  +      + +  
Sbjct: 264 ANGLDVAALIALSAPRQRAVLRAWLTKAGMRALSSRRLEDLHTQLIDARDDGALRIELPT 323

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-- 364
             + R     WI     +       P +  V  G   F+    +  ++   ++  A +  
Sbjct: 324 GQVRRYRGVAWIDTGAND------RPGQAAVAIGAQLFEPAHPAEQRVTVDAWGGALLFA 377

Query: 365 ---PSGIPPIIAQRALSSMPSKEGGKPLLAP 392
                G+     Q  L   P + G +  L P
Sbjct: 378 PVASDGVATQTLQAPLVLSPRRGGERIALRP 408


>gi|219684916|ref|ZP_03539857.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii PBr]
 gi|219671654|gb|EED28710.1| tRNA(Ile)-lysidine synthetase [Borrelia garinii PBr]
          Length = 440

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 108/270 (40%), Gaps = 24/270 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R   +  
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIVAFYFAHFIRSDNEQN 67

Query: 69  -EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  V      +  ++ +    +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGISIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+       + +  +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NIS+  D +N  D + R RVR  +            K  + +       V       
Sbjct: 181 SLNNISFFVDSTNAQDLYLRNRVRNNLLPSIEKIFKGYQKCLKRISEFSKEFVDYFEKDE 240

Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLL 268
                +     S D+   LN    L+F L+
Sbjct: 241 FFPVEKGKYYYSFDLKTFLNFPKYLVFRLI 270


>gi|288940435|ref|YP_003442675.1| tRNA(Ile)-lysidine synthetase [Allochromatium vinosum DSM 180]
 gi|288895807|gb|ADC61643.1| tRNA(Ile)-lysidine synthetase [Allochromatium vinosum DSM 180]
          Length = 477

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 117/301 (38%), Gaps = 16/301 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +A SGG DS  LL A   + +         +  A+ VDH L+  + D  R+ +  C+ LR
Sbjct: 25  IAYSGGLDSSVLLAAAAVIRARLPGEDSSGRLRAVHVDHGLQTASADWARHCAARCAALR 84

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +  S+        P   L A AREARYA+           L++TA   DDQ ET+ +   
Sbjct: 85  LPLSIERPTSTPGPGESLEAWAREARYAIFRRLLAP--GDLLLTAQHRDDQAETLLLALL 142

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+    +   +       + RP L   R+ +  +  ++ + W +DPSN    F+
Sbjct: 143 RGSGPHGLAAMPVVAPL---GAGRLVRPLLDFGRQSLADYACRQGLDWLQDPSNDHTAFD 199

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R  +R  V  + L A +           +     A L+ +Y    +  +  +    L++ 
Sbjct: 200 RNYLRHRVLPL-LRARWPSASATLARSARHCAEAAELVDQYAERALAEVRGVQPGALSLA 258

Query: 261 ST-LLFYLLRVSA---AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRA 313
           +   L   LR +     +       P  R ++R++      ++     V      + R  
Sbjct: 259 ALGRLDRPLRKAVVRHWLVQRGFRPPDTRHLDRLLDELPAARADANPVVVWEGCQVRRYR 318

Query: 314 N 314
            
Sbjct: 319 G 319


>gi|282901699|ref|ZP_06309615.1| PP-loop protein [Cylindrospermopsis raciborskii CS-505]
 gi|281193462|gb|EFA68443.1| PP-loop protein [Cylindrospermopsis raciborskii CS-505]
          Length = 335

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 106/295 (35%), Gaps = 18/295 (6%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L  P  H+LVA+SGG DS+ L+  L  +       K K +    DH  RE ++    +
Sbjct: 17  RHLFAPHEHLLVALSGGQDSLCLIKLLVDLQVK---WKWKLAIAHCDHRWREDSQANADH 73

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V ++ +   +       + +       A AR  RY +  E A+      I+T HT  D+ 
Sbjct: 74  VKNLATSWDLPFH---LQIATDPVNSEADARNWRYRVFREIAEDYGYKYIVTGHTSSDRA 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+     R     G  L  +           + RP L   RE    F    ++    D 
Sbjct: 131 ETLIYNLIRGTGADG--LQSLNWERSLGEKTMLVRPLLEITREQTGKFCQDLDLPVWVDS 188

Query: 193 SNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           +N + ++ R R+R+ +               L    +  +     +      L  + LT 
Sbjct: 189 TNQNLQYPRNRIRQQLLPYLAANFNPQVESHLSHTAELLRAEVEYLEQIAHQLRLQALTK 248

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
                + +++ +L      L   +     +       P +  +E++   + +  R
Sbjct: 249 CENGDLRLNRHLLKQQPLALQRRVIRQI-LHEALPQTPNFDHIEKITDLINAPNR 302


>gi|254421293|ref|ZP_05035011.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. PCC 7335]
 gi|196188782|gb|EDX83746.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. PCC 7335]
          Length = 232

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 80/211 (37%), Gaps = 20/211 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   +HIL+AVSGG DS+ L   L  + S           I  DH  R  + +   +V
Sbjct: 26  RLLPKDSHILIAVSGGQDSLCLARLLSDLSSK---WYWSLGWIHCDHGWRTDSTENAAHV 82

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +    +I    V  + +K      AAAR  RY +    A+    + ++T HT  D+ E
Sbjct: 83  VKLAEAWQIP---VRIELAKGLAKTEAAARGWRYEVFERVAREQGYSHVVTGHTKSDRAE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYD--------------LNLWISRPFLRCRREDIRS 179
           TV     R     G+G       +                   + + RP L   R +   
Sbjct: 140 TVLYNLIRGAGTDGLGTLRWTRPLSLAACLAQGDNLDIKQSQAITLVRPLLDFTRAETAH 199

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
           F   ++I    D SN D  F R R+R  +  
Sbjct: 200 FCQDQHIPVWIDSSNQDLNFRRNRIRLELMP 230


>gi|323126272|gb|ADX23569.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 428

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 20/250 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+AVSGG DSM LL  LH    D    +I      ++H  R  ++ E  Y+    +
Sbjct: 20  HRRVLIAVSGGVDSMNLLHFLHLFQEDL---QISIGIAHINHKQRIESEIEEDYLRQWAN 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              +   +  ++          AAR+ RY    +  +    + ++TAH  DDQ ET+ MR
Sbjct: 77  NHSVPIYISHFEGIFS----EKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETILMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   + D+       NI   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKPVQPFG-NGQLIRPFLSFSKGDLP------NIFHFEDTSNEETT 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             R RVR       L  L  +  +      ++     +L   +  +  +  I    +   
Sbjct: 184 VFRNRVRNQ----YLPLLEKENPQLVQSLSQLAIENQLLFQAFTELTTKITITHLAEFRA 239

Query: 259 IDSTLLFYLL 268
             +++ ++LL
Sbjct: 240 QTASVQYFLL 249


>gi|291287206|ref|YP_003504022.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884366|gb|ADD68066.1| tRNA(Ile)-lysidine synthetase [Denitrovibrio acetiphilus DSM 12809]
          Length = 417

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 107/258 (41%), Gaps = 18/258 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +LVA SGG DS+ LL  L     +        SA  ++H  R+T+  + ++ +D C 
Sbjct: 18  GRRLLVAFSGGKDSVALLHFLKR---NEGIQGYSVSACHINHLFRKTSLWDEKFCADFCE 74

Query: 79  RLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +L I          +     +      AR  RY  +    K  +A L++TAHT +D +ET
Sbjct: 75  KLSIPFISYRADVPRYCEVKKMSFEHGARIVRYRALYNAMKHFDAELLLTAHTKNDVVET 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            ++      A +G  +  +      D +  + RP L    E+I  ++ +  I    D +N
Sbjct: 135 FFIH-----AVQGASVFSLKGITERDRD--LFRPMLDISTEEILEYINRYKIKHAVDETN 187

Query: 195 TDDRFERVRVRRFV-RDIDLHALYLKMKKFQDLRVKV--NNAVAMLIPKYLTVHMRSIIA 251
            DD + R  +R  +   +  +    +      +   V  ++ +   +   + V   S++A
Sbjct: 188 NDDSYLRNFIRNHITATLSEYRPGFENNILGIMHDAVKYDSYLEERLKPLINVSDGSVLA 247

Query: 252 ISQDILN-IDSTLLFYLL 268
           + + + + +      YLL
Sbjct: 248 VERQVFDSLHEVEQDYLL 265


>gi|301344692|ref|ZP_07225433.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB056]
 gi|301510194|ref|ZP_07235431.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB058]
 gi|301595522|ref|ZP_07240530.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB059]
 gi|332856879|ref|ZP_08436288.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013150]
 gi|332867219|ref|ZP_08437484.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013113]
 gi|332726933|gb|EGJ58438.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013150]
 gi|332734158|gb|EGJ65290.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6013113]
          Length = 427

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 122/292 (41%), Gaps = 19/292 (6%)

Query: 31  DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90
           DSM LL  +  +   +        AI +DH L++ + +    V+   + L I + +   +
Sbjct: 2   DSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQ 55

Query: 91  NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150
            +     L A AR+ARY    +H +     +++ AH   DQ ETV +R        G+  
Sbjct: 56  IAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAA 111

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
               D   Y  ++ I RPFL   RE I  +  Q  + + +DP N D+ ++RV  R  +  
Sbjct: 112 MQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCREALWP 168

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR- 269
             L + + KM++       +    + ++ + L    +   +     L   S L F   R 
Sbjct: 169 -FLTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSADYLDLTKLSELSFARQRQ 227

Query: 270 -VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317
            +SA + G     P +  +ER+   ++  KS  +  +   +    R  N L+
Sbjct: 228 LLSAWMKGQGQYRPAFEMVERLRAEVIESKSDAQAALHWNQFYYVRYQNILY 279


>gi|282895983|ref|ZP_06304014.1| PP-loop protein [Raphidiopsis brookii D9]
 gi|281199093|gb|EFA73963.1| PP-loop protein [Raphidiopsis brookii D9]
          Length = 335

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 107/296 (36%), Gaps = 20/296 (6%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L  P  H+LVA+SGG DS+ L+  L  +       K K +    DH  RE ++    +
Sbjct: 17  RHLFAPHEHLLVALSGGQDSLCLIKLLVDLQVK---WKWKLAIAHCDHRWREDSQANADH 73

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V ++ +   +       + +         AR  RY +  E A+      I+T HT  D+ 
Sbjct: 74  VKNLATSWDLPFH---LQIAIDPVNSEGDARNWRYRVFREIAEDYGYKYIVTGHTSSDRA 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+     R     G  L  +           + RP L   RE    F    ++    D 
Sbjct: 131 ETLIYNLIRGTGADG--LQSLTWQRSLGEKTMLVRPLLEITREQTGKFCQDLDLPVWVDS 188

Query: 193 SNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           +N + ++ R R+R+ +               L    +  +     +      L  +  T 
Sbjct: 189 TNQNLQYPRNRIRQQLLPYLAANFNPQVESHLSHTAELLRAEVEYLEQIAHQLRLQASTK 248

Query: 245 HMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
                + +++D+L      +   ++R        Q   P +  +E++   + +  R
Sbjct: 249 CEDGDLRLNRDLLKQQPLAIQRRVIRQILQEALPQT--PNFDHIEKIRDLINAPNR 302


>gi|251781481|ref|YP_002995782.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390109|dbj|BAH80568.1| tRNA(Ile)-lysidine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 428

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 20/250 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+AVSGG DSM LL  LH    D    +I      ++H  R  ++ E  Y+    +
Sbjct: 20  HRRVLIAVSGGVDSMNLLHFLHLFQEDL---QISIGIAHINHKQRIESEIEEDYLRQWAN 76

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              +   +  ++          AAR+ RY    +  +    + ++TAH  DDQ ETV MR
Sbjct: 77  NHSVPIYISHFEGIFS----EKAARDWRYHFCRKIMQNEQYSALVTAHHLDDQAETVLMR 132

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LSG+     +  N  + RPFL   + D+       NI   ED SN +  
Sbjct: 133 LIRGSRLR--HLSGIKPVQPFG-NGQLIRPFLSFSKGDLP------NIFHFEDTSNEETT 183

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
             R RVR       L  L  +  +      ++     +L   +  +  +  I    +   
Sbjct: 184 VFRNRVRNQ----YLPLLEKENPQLVQSLSQLAIENQLLFQAFTELTTKITITHLAEFRA 239

Query: 259 IDSTLLFYLL 268
             +++ ++LL
Sbjct: 240 QTASVQYFLL 249


>gi|330959215|gb|EGH59475.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 445

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 113/309 (36%), Gaps = 20/309 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +  SGG DS  LL  L  +    +   +   A+ V H L+  A     +   VC  L +A
Sbjct: 30  IGFSGGLDSTVLLHLLADLSRRETLPALN--AVHVHHGLQAAADAWPEHCRQVCQALGVA 87

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              V  +  +P   +  AAR+ARYA  ++  +     +++T    DDQ ET+  R  R  
Sbjct: 88  FERVRVQV-EPGASIEQAARQARYAAFTD--RLGEGDVLLTGQHRDDQAETLLFRLLRGA 144

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+GM    +      + RP L   R ++  + LQR ++W EDPSN D +F R  
Sbjct: 145 GVRG--LAGMPVQRILGRG-HLVRPLLAVSRTELEDYALQRGLTWVEDPSNDDQQFSRNF 201

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R  V  +                V +  A  +L          +        L +    
Sbjct: 202 LRGQVLPLLTSRWPQASASLARTAVHLGEAQQLLDELAAQDIANAQAITPYAWLGLPVLS 261

Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312
           L  L+ +S A     +       + R+           +            +    + R 
Sbjct: 262 LEPLVGLSVARQRNALRY-WLAPLTRLPDTDHWVGWETLRDAAPDALPLWRLTEGALYRA 320

Query: 313 ANFLWITRA 321
            + LW   A
Sbjct: 321 QSLLWWLPA 329


>gi|162448219|ref|YP_001621351.1| PP-loop superfamily ATPase [Acholeplasma laidlawii PG-8A]
 gi|161986326|gb|ABX81975.1| ATPase of the PP-loop superfamily [Acholeplasma laidlawii PG-8A]
          Length = 406

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 28/280 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++AVSGG DSM L               + F  +  +H  R  +  +   V  +C+   I
Sbjct: 14  VLAVSGGVDSMVLFDLFVK-------HNLNFVVVHFNHQKRAESILDHELVESMCTLHHI 66

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            +  +  K           +R ARY  +   A+  +   I+TAH  DD  ET+ M+  R 
Sbjct: 67  PYHYIKLKIKN--GNFQEVSRNARYKNLEFIAEQYHTPYIVTAHHLDDLAETIMMKLIRG 124

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                +G + M +    D  +++ +P L   +E+I  +     I + ED +N +D + R 
Sbjct: 125 SNL--LGYAAMQEVTHIDKFIYL-KPLLNYSKEEISLYQQTHQIKFYEDHTNLEDTYSRN 181

Query: 203 RVRRFVRDI--DLHALYLKMKKFQD----LRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           RVR  +  +  + + +   +K F          +       + K L+ H+ S  A+   +
Sbjct: 182 RVRHHLIPLLKEENDVLTHLKNFSKQSYLAASYIRKESNNFLSKDLSFHLSSFDALHDAV 241

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
                +L+F  L++             ++ +E ++  LKS
Sbjct: 242 KMDVISLIFESLKIDK----------TFKKIETILAQLKS 271


>gi|107028745|ref|YP_625840.1| tRNA(Ile)-lysidine synthetase-like [Burkholderia cenocepacia AU
           1054]
 gi|116690096|ref|YP_835719.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia HI2424]
 gi|105897909|gb|ABF80867.1| tRNA(Ile)-lysidine synthetase-like protein [Burkholderia
           cenocepacia AU 1054]
 gi|116648185|gb|ABK08826.1| tRNA(Ile)-lysidine synthetase [Burkholderia cenocepacia HI2424]
          Length = 473

 Score =  183 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 137/396 (34%), Gaps = 27/396 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   V +     +RL +A   +     +    G+ A ARE RYA + E  +      +  
Sbjct: 69  ADAWVAHAEGQAARLGVAFESMRVDVPRDSGLGIEATARERRYAALDEMGERHGVAALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+            +++   RP LR  R  +  +  Q 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSIERVRPLLRLLRAQLERYAEQH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAML 237
            ++W +D SN D R+ R  +R  V    L AL +    F+D               +  L
Sbjct: 188 ALAWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 238 IPKYLTVHMRSII-AISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294
                 V  R    A+S+D L   D T    LLR      G    S     +M R +   
Sbjct: 244 AELDFAVAARDDGHALSRDALAGFDDTRGANLLRFWMRRLGLPGASAARLANMMRQLRAA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++          +  T    PE    WDG+  +      
Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGTPQPEAALAWDGQEVWHLPGWR 363

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKE 384
            + +     +     VP  +       A +    + 
Sbjct: 364 GTFVFAPADAGSADAVPEALLRGTRLAARARAGGER 399


>gi|302791165|ref|XP_002977349.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii]
 gi|300154719|gb|EFJ21353.1| hypothetical protein SELMODRAFT_417312 [Selaginella moellendorffii]
          Length = 1167

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 133/306 (43%), Gaps = 22/306 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             + +AVSGG+DSM L +        +S        ++VDH  R  + +EV  V +    
Sbjct: 47  DRVAIAVSGGADSMALCLLALEWTESKSL----VFGLTVDHGFRRESAEEVVQVREWLRT 102

Query: 80  LRIAHSVV--SWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           L +   ++  SW+   P  G L  +AR+ARY L+ E  +   A +++TAH  DDQ E   
Sbjct: 103 LGMECEILKCSWQGGFPSPGHLQESARKARYELLQEACQRNGAGVLLTAHHADDQAELFA 162

Query: 137 MRSQRDYAEKGMG-------LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           +R  R   + G+        L  +  +I+    L + RP L  +++D+ +     + SW 
Sbjct: 163 LRLSRCSGDNGLACMALASELFPIMPSIIEASRLLLVRPLLDLQKKDLYNVCHVADQSWI 222

Query: 190 EDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           EDP+N    + R ++R+ +  +       +   +  ++  R +++    ML+  ++ + +
Sbjct: 223 EDPTNCKTIYARNKIRKELVSLSDSMRSEVQDLIATYRKKRSEIHVQTKMLMTTFVHIDL 282

Query: 247 R-SIIAISQDILNI---DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKRGC 301
                 +  + L     D+T+L  LL         +       ++     ++ K G  G 
Sbjct: 283 DYGYAVVDAEGLLAETNDTTVLETLLASVLRFVSQRPKPAKGTAVRGARAWITKRGTEGR 342

Query: 302 VSIGRV 307
           +++   
Sbjct: 343 LTVAGC 348


>gi|303326966|ref|ZP_07357408.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3]
 gi|302862954|gb|EFL85886.1| tRNA(Ile)-lysidine synthase [Desulfovibrio sp. 3_1_syn3]
          Length = 366

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 126/334 (37%), Gaps = 22/334 (6%)

Query: 6   IESVRFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +   RF++R L  P  A +++A+SGG+DS  L   LH +       K+   A++V+H LR
Sbjct: 19  LAVERFYLRRLEIPRGARLVLALSGGADSTALACILHILSPRL---KLDLFALTVNHGLR 75

Query: 64  ETAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
             A  + R   D+C+ L I     H+ V+   S    GL  A R ARYAL+ E  +   A
Sbjct: 76  PEADADARCARDLCALLGIPCVQRHADVTGLASDKGWGLEEAGRHARYALLEEERRARQA 135

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++  H  +D  E V +R  R      +G          D    + RP L  R + +R 
Sbjct: 136 DFVVLGHHNEDLSEDVLLRLTRGTGWPALG-----GMAARDDTRRLLRPLLFTRPQALRE 190

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
            L Q  I W ED SN    F R R+R  V    L  L  +          +         
Sbjct: 191 LLRQCGIVWREDASNDSPAFTRNRLRHNV----LPLLRAENPSLDRSMAALWQLAQWDAD 246

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
            +      ++ A        D      L R           L  Y  + R++L   +G  
Sbjct: 247 YWEKTLSEALAAHPWQEEEHDGRPCLILPRALLTALHPAARLRLYLKVVRLLLGRANGDS 306

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
           G  +  R ++D  A      R  R      L   
Sbjct: 307 GGQARSRTLLDLDAAL----REGRGNTRFQLPGG 336


>gi|160943996|ref|ZP_02091226.1| hypothetical protein FAEPRAM212_01497 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444672|gb|EDP21676.1| hypothetical protein FAEPRAM212_01497 [Faecalibacterium prausnitzii
           M21/2]
          Length = 478

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 116/331 (35%), Gaps = 32/331 (9%)

Query: 1   MFLSPIESVRFFV--RSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           M  + +  V  F     L+ P    H+  AVSGG+DSM     L  +   +       SA
Sbjct: 1   MDTAILARVEDFCIREGLLQPGASQHLAAAVSGGADSMA---LLLLLRQLQPRFGYTLSA 57

Query: 56  ISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVVSWK--NSKPQTGLMAAAREARYALISE 112
             V+H LR  + D +  +V   C+RL +   V       S P       AR  RY   ++
Sbjct: 58  CHVNHGLRGQSADRDEAFVRAECARLGVPLRVFHAAELASPPAHAGEDWARRLRYTAFAQ 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +      I TAHT +DQ ET+ +R  R     G G        +        RP L  
Sbjct: 118 L-QGQGIDAIATAHTANDQAETLLLRLARGTGLHGAG-------GIRPRRGCYLRPLLCL 169

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            R +  +        W  D +N  D + R R+R       L AL            +   
Sbjct: 170 SRAETEAVCRAAGQPWVTDETNDTDAYARNRLRHN----ALPALESTNAAAVQNLARFCE 225

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
             A     +     R + A         +   + L  + AA       L    ++  ++ 
Sbjct: 226 KAARADVYFAAEAARLLAAARL----PGAETAWQLAPLQAA-----DPLLLETALHSLVA 276

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323
            ++  +   V +   V+ + +  + +T  VR
Sbjct: 277 PVRDAEEKYVQLLCAVVRQGSGAVQLTGQVR 307


>gi|184156933|ref|YP_001845272.1| ATPase [Acinetobacter baumannii ACICU]
 gi|332873990|ref|ZP_08441925.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6014059]
 gi|183208527|gb|ACC55925.1| predicted ATPase of the PP-loop superfamily [Acinetobacter
           baumannii ACICU]
 gi|332737731|gb|EGJ68623.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii 6014059]
          Length = 427

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 68/292 (23%), Positives = 121/292 (41%), Gaps = 19/292 (6%)

Query: 31  DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90
           DSM LL  +  +   +        AI +DH L++ + +    V+   + L I + +   +
Sbjct: 2   DSMLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQ 55

Query: 91  NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150
            +     L A AR+ARY    +H +     +++ AH   DQ ETV +R        G+  
Sbjct: 56  IAN--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAA 111

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
               D   Y  ++ I RPFL   RE I  +  Q  + + +DP N D  ++RV  R  +  
Sbjct: 112 MQAID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCREALWP 168

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR- 269
             L + + KM++       +    + ++ + L    +   +     L   S L F   R 
Sbjct: 169 -FLTSRFPKMQQALSRTSYLMQDASEVLEEVLKDDWQYSGSADYLDLTKLSELSFARQRQ 227

Query: 270 -VSAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317
            +SA + G     P +  +ER+   ++  KS  +  +   +    R  N L+
Sbjct: 228 LLSAWMKGQGQYRPAFEMVERLRTEVIESKSDAQAALHWNQFYYVRYQNILY 279


>gi|325278075|ref|ZP_08143594.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. TJI-51]
 gi|324096782|gb|EGB95109.1| tRNA(Ile)-lysidine synthetase [Pseudomonas sp. TJI-51]
          Length = 247

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 90/216 (41%), Gaps = 8/216 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS  LL  L      RS       A+ V H L+  A     +   VC+ L IA
Sbjct: 15  IAFSGGLDSTVLLHLLADYA--RSHAVPPLRAVHVHHGLQAAADAWPAHCQAVCANLGIA 72

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  + S P   L  AAR+ARYA   +        ++ T    DDQ ET+    +   
Sbjct: 73  LEVIHVQVS-PGASLEQAARDARYAAFQQTL--GPGDILFTGQHCDDQAETL--LLRLLR 127

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
                GL+ M           + RP L C R+ ++++   R ++W +DPSN D RF R  
Sbjct: 128 GAGLRGLAAMPGQRPLGQGS-LVRPLLGCARQLLQAYAQARGLAWIDDPSNADTRFARNF 186

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +RR V            + F      +  A+ +L  
Sbjct: 187 LRRKVMPQLQQRWPQVSQNFARAAEHLGEALGLLDE 222


>gi|206560511|ref|YP_002231275.1| tRNA(Ile)-lysidine synthase [Burkholderia cenocepacia J2315]
 gi|198036552|emb|CAR52449.1| tRNA(Ile)-lysidine synthase [Burkholderia cenocepacia J2315]
          Length = 473

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 134/378 (35%), Gaps = 27/378 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   V +     +RL +A   +     +    G+ A ARE RYA +    +      +  
Sbjct: 69  ADAWVAHAEAEAARLGVAFESMRVDVPRDSGLGIEATARERRYAALDAMGERHGVATLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+            +++   RP LR  R  +  +  Q 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSIERVRPLLRLLRAQLERYAEQH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK-------VNNAVAML 237
            ++W +D SN D R+ R  +R  V    L AL +    F+D   +           +  L
Sbjct: 188 ALTWIDDESNGDTRYARNALRLDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 238 IPKYLTVHMRSII-AISQDIL-NIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294
                 V  R    A+S+D L   D T    LLR      G    S     +M R +   
Sbjct: 244 AELDFAVAARDDGRALSRDALVGFDDTRGANLLRFWMRRLGLPGASAARLANMMRQLRAA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++          +  T   +PE    WDG+  +      
Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGTPHPEAALAWDGQEVWHLPGWR 363

Query: 349 DSLIQIGPQSYRKADVPS 366
            + +     +     VP 
Sbjct: 364 GTFVFAPADAGSADAVPE 381


>gi|218509292|ref|ZP_03507170.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli Brasil 5]
          Length = 312

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 10/256 (3%)

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R         SG+ D +L+D   WI RP L   R DIRSFL +R ++W +DPSN D
Sbjct: 1   MRGVRTEQLS----SGIADAVLFDRRFWILRPLLFSSRADIRSFLRERRVAWIDDPSNED 56

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            ++ERVRVRR +      A    ++     R+ +++A A  + ++  +    +  +  D 
Sbjct: 57  VKYERVRVRRQLS--ADPATETDIRAAWKERLALSSAAAEWLDRHFRLQGGLLGQVLPDG 114

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L  D  +L Y L    A+ GGQ   PG   MER++LF    +   +++GRVV D R + L
Sbjct: 115 LRQDHAVLAYALGRLTAVFGGQAFAPGRVQMERLLLFAAGNEPRRMTVGRVVFDLRRDGL 174

Query: 317 WITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP----SGIPPII 372
           ++ R  R +  L L P E  VWDGR++  N S + I+I  Q  R + +P       PP +
Sbjct: 175 YLARESRGILPLTLRPGEAGVWDGRFEAANGSGATIRIEAQGARSSPIPVLVTGIQPPRV 234

Query: 373 AQRALSSMPSKEGGKP 388
                S++P +   + 
Sbjct: 235 GAVNDSTVPDESAARK 250


>gi|309781266|ref|ZP_07676003.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Ralstonia sp.
           5_7_47FAA]
 gi|308920087|gb|EFP65747.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Ralstonia sp.
           5_7_47FAA]
          Length = 472

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 139/391 (35%), Gaps = 21/391 (5%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F V     P  + +A+SGG DS  LL A  +        +++  A+ + H L   A    
Sbjct: 30  FVVSGDAEPPTVAIALSGGRDSAALLHACAAWRDA--GARVQLVALHIHHGLHADADVWE 87

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                +   + +         +     G+  AAREARYA +        A++++TAH  D
Sbjct: 88  CACRRMAQAVGVTFHARRVNVAVDAGRGVEEAAREARYAALEALCTETGASILLTAHHQD 147

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV ++  R     G+    M         + + RP++   R +I  +     + W 
Sbjct: 148 DQAETVLLQLMRGAGLDGLAAMPMA----RAGAVTLLRPWVDAPRSEIELYAHAHALCWV 203

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           EDPSNTD R+ R  +R  +  +  H  A    + +           +  +    L+    
Sbjct: 204 EDPSNTDARYARNALRPLLAGMADHFPAYREALSRSAAHLADAAALIDEIAQADLSQVAS 263

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVSIGR 306
           +       +  + +     +LR   A  G +         +   ++  +      + +  
Sbjct: 264 ANELNVAALSALSAPRQRAVLRAWLAKAGMRALSSRRLEDLHTQLVDARDDGALRIELPT 323

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV-- 364
             + R     WI     +       P +  V  G   F+    +  ++   ++  A +  
Sbjct: 324 GQVRRYRGIAWIDTGTND------RPGQAAVAIGAQLFEPAHPAEQRVAVDAWGGALLFA 377

Query: 365 ---PSGIPPIIAQRALSSMPSKEGGKPLLAP 392
                G+     Q  L   P + G + +L P
Sbjct: 378 PVASDGVATQTLQAPLVLSPRRGGERIVLRP 408


>gi|291518254|emb|CBK73475.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Butyrivibrio fibrisolvens
           16/4]
          Length = 415

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 105/283 (37%), Gaps = 32/283 (11%)

Query: 42  VLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQT 96
           +L  R    +   A+ V+HC+R E A ++  YV  +C   ++   VV         +   
Sbjct: 6   LLGLREEYNLDIHALHVNHCIRGEDADEDQAYVESICRDYQVPLKVVRVDIPALVKETGR 65

Query: 97  GLMAAAREARYALISEHAKTI------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150
                AR ARY     +A  +      +   I  AH  DD  ETV     R     G GL
Sbjct: 66  SEEEEARMARYEAFEAYADELSKESQADNVKIAIAHNADDNAETVIFHMAR-----GTGL 120

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
            GMC          I RP L   + +I  F+ +  IS+C D +N+   ++R R+R  +  
Sbjct: 121 DGMCGIAP--TRGRIIRPLLEVPKAEIMEFIQENEISYCVDETNSMVCYDRNRIRHNILP 178

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
                    ++   D+  ++       +  Y+++    ++ IS++  N      F     
Sbjct: 179 ELSEINSKALEHIADMCNRLTE-----VADYISIEAHGLLEISREDGNKLRKRAFVTAPK 233

Query: 271 SAAICGGQISLPGYRS---------MERVMLFLKSGKRGCVSI 304
             A    +  L  +           +E ++  L+      V +
Sbjct: 234 VIASQALKEYLSSFMPNQKDVSAVHIESILGLLQEDGERQVQL 276


>gi|257066129|ref|YP_003152385.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii DSM 20548]
 gi|256798009|gb|ACV28664.1| tRNA(Ile)-lysidine synthetase [Anaerococcus prevotii DSM 20548]
          Length = 456

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 25/285 (8%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ I  VR  +R+   +     I+V  SGG DS  L+ AL  +  +  F         ++
Sbjct: 1   MTIINKVRETIRANGLIEEGDTIIVGASGGPDSQFLIYALMELRKEMDF---TIILAHLN 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAK 115
           H  R+ A  +   V +   +  ++       +     K       A R  RY    E  K
Sbjct: 58  HLHRKEANFDESLVEETAEKFALSFRKKAASMDAYAKKYGISSEDAGRRLRYEFFREIQK 117

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
               + I  AH  DDQ ETV MR  R    +G+         +   N  I RP L  ++ 
Sbjct: 118 EYPKSKIAIAHNLDDQAETVLMRIIRGTGVEGL-------RAMDYRNGDIIRPILDIKKA 170

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRV 228
            I  +L    I +  D +N    + R ++R         +      +L    +   D   
Sbjct: 171 MILDYLNSEQIPYAIDKTNFTTDYTRNKLRLDIIPKIEKINPNFKESLVKLSEIATDEIS 230

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSA 272
             ++ +  +    +       ++  ++     D  +   L+R + 
Sbjct: 231 ISDSYIKNIYEDIIIQRKIDFVSFDKEAFESQDKAIQSRLIRCAI 275


>gi|108805006|ref|YP_644943.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108766249|gb|ABG05131.1| tRNA(Ile)-lysidine synthetase-like protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 444

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 124/323 (38%), Gaps = 25/323 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           +E+VR +   L  P  +   VSGG DS+ LL AL  +  + +        + VDH LR E
Sbjct: 11  LETVRRYGMDLSRPLAL---VSGGPDSVALLRALVGLGYEPA-------VLHVDHGLRGE 60

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            ++ +  +V ++C  L +   V S +  + + GL   AR  RY +  E A  + A+ +  
Sbjct: 61  ESRGDAEFVRELCRGLGLRCEVRSLRL-EGRAGLQERARRERYRIAGEVAGRLGASAVAV 119

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ET+ +   R    +G+       + +  +   + RP +   R +I  +L   
Sbjct: 120 GHNADDVAETLLLNLARGSGLRGL-------SGIPPVRGRVCRPLIERTRAEILGYLEAL 172

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN---AVAMLIPKY 241
              +  D +N   ++ R RVR  V  +        ++        +     A+  L    
Sbjct: 173 GQGYRVDSTNLLPKYARNRVRLEVMPVLEELHPGAVRNMARAAALLREDLAALEELAAGV 232

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           +            ++  +   L  Y +R + A    +      R +E V+   + G    
Sbjct: 233 VREEGGEAGMSVAELDGLPPALRRYAVRRAYAAVAPEAPPLPRRLVEAVLELARGGGGTR 292

Query: 302 ---VSIGRVVIDRRANFLWITRA 321
              +  G V   R    L + R 
Sbjct: 293 LLDLPGGVVAAARFGERLVLYRR 315


>gi|241662709|ref|YP_002981069.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12D]
 gi|240864736|gb|ACS62397.1| tRNA(Ile)-lysidine synthetase [Ralstonia pickettii 12D]
          Length = 472

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 142/397 (35%), Gaps = 22/397 (5%)

Query: 6   IESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           + +   FV S      I+ +A+SGG DS  LL A  +        +++  A+ + H L  
Sbjct: 24  VAACAAFVASSGAETPIVAIALSGGRDSAALLHACAAWRDA--GARVQLVALHIHHGLHA 81

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123
            A         +   + +         +     G+  AAREARYA +        A++++
Sbjct: 82  DADVWECACRRMAQAVGVTFHARRVNVAVDGGRGVEEAAREARYAALEALCTETGASILL 141

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DDQ ETV ++  R     G+    M         + + RP++   R +I  +   
Sbjct: 142 TAHHQDDQAETVLLQLMRGAGLDGLAAMPMA----RAGAVTLLRPWVDAPRSEIELYAHA 197

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKY 241
             + W EDPSNTD R+ R  +R  +  +  H  A    + +           +  +    
Sbjct: 198 HALCWVEDPSNTDARYARNALRPLLAGMADHFPAYREALSRSAAHLADAAALIDEIAQAD 257

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRG 300
           L+    +       +  + +     +LR   A  G +         +   ++  +     
Sbjct: 258 LSQVASANELNVAALSALSAPRQRAVLRAWLAKAGMRALSSRRLEDLHTQLVDARDDGAL 317

Query: 301 CVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360
            + +    + R     WI     +       P +  V  G   F+    +  ++   ++ 
Sbjct: 318 RIELPTGQVRRYRGIAWIDTGTND------RPGQAAVAIGAQLFEPAHPAEQRVAVDAWG 371

Query: 361 KADV-----PSGIPPIIAQRALSSMPSKEGGKPLLAP 392
            A +       G+     Q  L   P + G + +L P
Sbjct: 372 GALLFAPVASDGVATQTLQAQLVLSPRRGGERIVLRP 408


>gi|257470195|ref|ZP_05634286.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185]
 gi|317064411|ref|ZP_07928896.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185]
 gi|313690087|gb|EFS26922.1| cell cycle protein MesJ [Fusobacterium ulcerans ATCC 49185]
          Length = 444

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 133/318 (41%), Gaps = 29/318 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
               I+V  SGG DS+ L+  L  +  + +F       + ++H LR E +  + ++  + 
Sbjct: 19  KNDKIVVGFSGGPDSVFLVEMLMKLRENINF---DMVLVHINHLLRGENSDGDEKFSIEY 75

Query: 77  CSR--LRIAHSVVSWKNSKPQTGL--MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +  L++    ++        GL    A R+ARY L  E  + I A  I  AH  DDQL
Sbjct: 76  GKKKGLQVFSRKINITALGKDMGLTLEEAGRKARYDLFKEVFEKIGANKIALAHNKDDQL 135

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET   R  R    +G+      + I+   +++I RP     ++DI  +L + +I +  D 
Sbjct: 136 ETFMFRLTRGAGLEGL------EGIVAKRDVYI-RPISEIYKKDIVEYLNKNSIPYRIDE 188

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKK----FQDLRVKVNNAVAMLIPKYLTVHMRS 248
           +N ++ F R  +R  +          K K       +   +VN  + + + +Y+  +  S
Sbjct: 189 TNFENEFTRNSIRLDLIPFIEKRYNPKFKDKLYSLIEEIREVNKVLEIRLEEYVVNNKLS 248

Query: 249 IIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-GR 306
           I  + +    + S +L  YL      +          + ++ +   L  G    +S+ G 
Sbjct: 249 IEKLKKLDKYLLSKVLIQYLYSYGIEV--------SRKKIQLIEDILDKGGSKDISLNGE 300

Query: 307 VVIDRRANFLWITRAVRN 324
            V+ +  +FL I +  + 
Sbjct: 301 FVLKKEYDFLAIEKNTKK 318


>gi|33862341|ref|NP_893901.1| hypothetical protein PMT0068 [Prochlorococcus marinus str. MIT
           9313]
 gi|61216599|sp|Q7V987|TILS_PROMM RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33640454|emb|CAE20243.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 343

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/302 (24%), Positives = 117/302 (38%), Gaps = 28/302 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A +L+AVSGG DSM LL  L  +     +          DH   + +      + +
Sbjct: 29  LPAKASLLIAVSGGQDSMALLGLLIDLQRKHGW---SLEVWHGDHNWHKQSATIATELKN 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT-------INATLIMTAHTF 128
            C    ++    S +    QT   A AR  RY  ++ HA+             ++T HT 
Sbjct: 86  WCESHNLSFC--SDQAKPGQTNNEATARHWRYEQLTLHAERLSSNNPNHPCRYVLTGHTS 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRN 185
            D+ ET+ +   R     G+     C  I  D    N+ + RP L   RED      +  
Sbjct: 144 SDRAETLLLNLARGTDLAGLSSMRQCRPISKDHPHKNVQLIRPLLGFSREDTALICSELG 203

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN------NAVAMLIP 239
           +    DP+N++  F R RVR+ V  +          +   L  ++N       A+AML  
Sbjct: 204 LPIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLRMAALAERLNHHHADQQAIAMLAL 263

Query: 240 KYLTVHMR-SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
             L+         ++Q  +   +TLL Y L+       G  SLP    +E++   +  GK
Sbjct: 264 NNLSKQNGLCRKDLAQLPITARTTLLAYWLKR-----SGAPSLPA-VQLEQISQSIAPGK 317

Query: 299 RG 300
             
Sbjct: 318 PP 319


>gi|51599039|ref|YP_073227.1| hypothetical protein BG0813 [Borrelia garinii PBi]
 gi|61216476|sp|Q65ZY6|TILS_BORGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|51573610|gb|AAU07635.1| conserved hypothetical protein [Borrelia garinii PBi]
          Length = 440

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 24/270 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIVAFYFAHFIRTDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  V      +  ++ +    +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQVKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+       + +  +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNKNIIRPLLEVSRLEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NIS+  D +N  D + R RVR  +            K  + +       V       
Sbjct: 181 SLNNISFFVDSTNAQDLYLRNRVRNNLLPSIEKIFKGYQKCLKRISEFSKEFVDYFEKDE 240

Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLL 268
                +     S D+   LN    L+F L+
Sbjct: 241 FFPVEKGKYYYSFDLKTFLNFPKYLVFRLI 270


>gi|328948674|ref|YP_004366011.1| tRNA(Ile)-lysidine synthase [Treponema succinifaciens DSM 2489]
 gi|328448998|gb|AEB14714.1| tRNA(Ile)-lysidine synthase [Treponema succinifaciens DSM 2489]
          Length = 454

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 122/325 (37%), Gaps = 38/325 (11%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDVCSRLR 81
           VAVSGG+DS+ LL+AL      +    I+  A++V+H +R  + + D+  YV  VC  L 
Sbjct: 34  VAVSGGADSVSLLVAL------KKNLNIQLKAVTVNHNIRSSKESSDDADYVESVCRSLG 87

Query: 82  IAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +                 K +T +  AAR+ RY   S+  KT   + +  AH  +DQ+ET
Sbjct: 88  VKCVRYDVAPGEIFSLAKKLKTSVEDAARKIRYEKFSDFIKTEGISFVCLAHNKNDQIET 147

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + MR  +        L G+  T          RP L   R +I  +L  + I++  D +N
Sbjct: 148 LAMRFLQGS----ANLCGIPMTREK-----FVRPLLNISRSEIEKYLQLQKINFRTDRTN 198

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            D++  R R+R  +    +  L  +   +Q+    +                  ++ I  
Sbjct: 199 FDNQIFRNRIRNKL----VPFLDNEFSGWQNAVFSLAEKSRAENEALSFFTENELLKIDC 254

Query: 255 DI----LNIDSTLLFYL---LRVSAAICGGQISLPGYRSMERVMLFLKSG---KRGCVSI 304
                  + D+     L   ++V     G        R     +  L SG     GC   
Sbjct: 255 KFENEKFSFDAEKFSSLPLAIKVRIIFKGIDFVKASERIPYAFVSCLASGCFENAGCSEC 314

Query: 305 GRVVIDRRANFLWITRAVRNLPTLI 329
           G +          I +  +     +
Sbjct: 315 GGLEFSFCNGRFLIQKKRKVATESV 339


>gi|296875509|ref|ZP_06899581.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC
           15912]
 gi|296433433|gb|EFH19208.1| tRNA(Ile)-lysidine synthetase [Streptococcus parasanguinis ATCC
           15912]
          Length = 424

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 100/298 (33%), Gaps = 26/298 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL   E    F         +LVA+SGG DSM L   L+    ++   KI      V+H 
Sbjct: 5   FLEFCEKQDLFT----PHRRVLVALSGGLDSMNLYELLYK---NKERLKIHLVLAHVNHG 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E   +  +  R      V  +          A AR  RY    +  +  + T 
Sbjct: 58  QRPESDLEESELRTLADRRETRIHVAHYSGDFT----EAKARTFRYDFFKQIMEKEDCTA 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++T H  +DQ ET +MR  R    +   LSG+     +     + RP L   ++++    
Sbjct: 114 LVTGHHANDQAETTFMRLIRGTKLR--HLSGIPVRQPFGKG-ELIRPLLTFTKDELME-- 168

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
               I   ED SN    + R RVR       L     +  + Q     +   V       
Sbjct: 169 ----IPHFEDSSNDSQDYFRNRVRHQ----YLPEFEKENPQMQVSLRYLAEEVTHWHQAL 220

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
             +     I           ++  +LL    A         G    + ++  L+  + 
Sbjct: 221 KELTSELTIQDLSSFRTYSHSVQSFLLEEYLAQF--PDLQLGRVQFQELLDLLRKKRN 276


>gi|154483317|ref|ZP_02025765.1| hypothetical protein EUBVEN_01018 [Eubacterium ventriosum ATCC
           27560]
 gi|149735827|gb|EDM51713.1| hypothetical protein EUBVEN_01018 [Eubacterium ventriosum ATCC
           27560]
          Length = 502

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 114/320 (35%), Gaps = 66/320 (20%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVS 74
           L Y   +++ VSGG+DS+ +L  L  + S+ +   +    + ++H +R   A+ +  YV 
Sbjct: 15  LQYGDSVILGVSGGADSICMLYLLKDISSEMN---LTLYVVHINHHIRGKQAQHDADYVK 71

Query: 75  DVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKT-------------- 116
           DVC +L +    +         +       A R+ARY    E A                
Sbjct: 72  DVCRKLNVDFKQIDADVPLMVKQTGMTEEEAGRQARYKAFFERAIEVKIKEKKQAKNQTK 131

Query: 117 ----------------------------------INATLIMTAHTFDDQLETVYMRSQRD 142
                                              N   I  AH  +D  ETV     R 
Sbjct: 132 KPDESRKLSLKENKENSAKEDGIKKNDPKERKNSYNNIKIAVAHNLNDNSETVLFNLFRG 191

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              KG+       T +      I RP L C R++I  +L  +NIS+C D +N +  + R 
Sbjct: 192 TGIKGL-------TGIPVRRDMIVRPLLCCTRQEIEHYLKSKNISYCSDATNKETEYSRN 244

Query: 203 RVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIA--ISQDILNI 259
           ++R  +     + +  K +    +    +N     L  +    + R +    + +   N+
Sbjct: 245 KIRLELLPYIKNNINKKAEYNIVNAAENLNEIWDYLNRQAAEEYNRYVKDEVLDEKAFNL 304

Query: 260 DSTLLFYLLRVSAAICGGQI 279
              +L  ++R       G++
Sbjct: 305 HPAVLNQVVRKMIENGAGKL 324


>gi|306828586|ref|ZP_07461780.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis ATCC 6249]
 gi|304429194|gb|EFM32280.1| tRNA(Ile)-lysidine synthetase [Streptococcus mitis ATCC 6249]
          Length = 425

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 24/237 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+      +F +     + +L+A+SGG DSM L   L +   +     I+     V+H 
Sbjct: 6   FLNHFLQKEYFKKH----SKVLLALSGGLDSMFLFQLLSTYQKELG---IELILAHVNHK 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +  E   +  +     +   + S+            ARE RY    +  K   AT 
Sbjct: 59  QRSESDWEENELRKLADAAELPIYITSFSGDFS----EVRAREFRYDFFRKIMKEAGATA 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAH  DDQ+ET+ MR  R    +   L+G+ ++ + D  + + RP L   + D     
Sbjct: 115 LVTAHHADDQVETILMRLIRGSRLR--HLTGIKESQVVD-GIELIRPLLPFHKTDFPP-- 169

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
               I   ED +N ++ + R R+R       L  L  +  + +   + +   ++   
Sbjct: 170 ----IFHFEDQTNRENSYFRNRIRNR----YLPELEKENPRLKSALLDLGREISDYQ 218


>gi|213585404|ref|ZP_03367230.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 168

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 7/175 (4%)

Query: 29  GSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS 88
           G DS  LL  L           +   AI + H L   A   VR+   VC R ++   V  
Sbjct: 1   GLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVER 58

Query: 89  WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
              +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  +R     G+
Sbjct: 59  VTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLALKRGSGPAGL 116

Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G            + RP LR  R+ +  + ++  + W ED SN DD ++R  
Sbjct: 117 SAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAYDRNF 168


>gi|329119473|ref|ZP_08248158.1| tRNA(Ile)-lysidine synthase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464406|gb|EGF10706.1| tRNA(Ile)-lysidine synthase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 441

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 137/404 (33%), Gaps = 30/404 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M   P   +R     +     I  A+SGG DS+ LL  L  +    +    + SA+ V H
Sbjct: 1   MHPVPAAVLRALPDPVRRARRIEAALSGGLDSVVLLHTLAQLQDSLNA---ELSAVHVHH 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   A   + +  D C  L I   V          G+ AAAR+ARY   +      +A 
Sbjct: 58  GLHAQADCWLDFCRDYCEHLGIPLRVEKVTVRPAGQGIEAAARQARYQAFA----RSSAD 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           ++  AH  DDQ ET ++ + R    + +        +  +  + I RP L   R ++ ++
Sbjct: 114 ILAAAHHADDQTETFFLAALRGGGLRALAAMPELRPLAENPAVHIWRPLLPHTRAELAAY 173

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP- 239
             +  + +  DP+N D  + R R+R                  +     + + +A+L   
Sbjct: 174 AAEHRLDYITDPANADPAYLRNRLRHDGLPRLRRIQPQLDAHIRAAVALLQDELAVLQET 233

Query: 240 ---KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLK 295
               + TVH       + D   +         R      GG +    +     RV+  + 
Sbjct: 234 VDADWQTVHDAHGFN-TVDWRQLTPARRRQTARRLLLELGGSLKNQAFLTDFCRVLDQIG 292

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIG 355
           + +       R +I  +     +    +   T          W                 
Sbjct: 293 TSEAQWPLGARTLIASQNRLYCLPNDWQRQYTPADQTGSLKDW----------------Q 336

Query: 356 PQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399
              ++    P G+PP    R L   P+ + G  L  P  R   K
Sbjct: 337 AAGWQLRPAPHGLPPATLARPLRIRPAAK-GDLLATPVGRKPPK 379


>gi|320160301|ref|YP_004173525.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1]
 gi|319994154|dbj|BAJ62925.1| tRNA(Ile)-lysidine synthase [Anaerolinea thermophila UNI-1]
          Length = 476

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 22/316 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             + +++ VSGG+DS+ LL  LH                  +H LR  A+ E  +V    
Sbjct: 19  PESPLVLGVSGGADSLCLLDVLHR-------AGFNLIVAHFNHRLRPEAESEADWVCAQA 71

Query: 78  SRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +  +   +    V     +    +  AAREARY+ +   A  + A  +  AHT  DQ+E
Sbjct: 72  QQRGLRVELGQGEVLAMAKEQGMSIEEAAREARYSFLFSVAHQVQAQAVAVAHTASDQVE 131

Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           TV M   R    KG+ G+        +     + RP L   RE++ ++  +R ++W EDP
Sbjct: 132 TVLMHLIRGTGHKGLTGMPYRGFLNQFSTTTPLVRPMLSIWREEVLAYCHERGLTWLEDP 191

Query: 193 SNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           SN D RF R R+R  V  +          A++       +      NA      + +   
Sbjct: 192 SNRDVRFTRNRLRNEVLPLLKQVNPRVEEAIWRLSTLLAEEDDVFENAFQQAWNQCVLEQ 251

Query: 246 MRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC--V 302
               I +S++ +  +   L   +LR S ++    +    + ++ R M F++   +     
Sbjct: 252 SSKQIVLSRERVQSLSPALQREVLRWSLSLLRPALRDLDFDTVNRAMQFVQQPTQSRHIH 311

Query: 303 SIGRVVIDRRANFLWI 318
            +  + +      L +
Sbjct: 312 LVAGLGLRLEGEHLIV 327


>gi|171058356|ref|YP_001790705.1| tRNA(Ile)-lysidine synthetase [Leptothrix cholodnii SP-6]
 gi|170775801|gb|ACB33940.1| tRNA(Ile)-lysidine synthetase [Leptothrix cholodnii SP-6]
          Length = 457

 Score =  183 bits (464), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 76/331 (22%), Positives = 121/331 (36%), Gaps = 28/331 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     I VA SGG DS  LL A  +  + R    +   A+ V H L   A D + +   
Sbjct: 9   LGGKTRIAVAYSGGRDSSALLHATVACAAAR----VDVHALHVQHGLSAFAPDWLAHCER 64

Query: 76  VCSRLRIA------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            C  L +       H+            + A AR  RY  ++  A+      ++ AH  D
Sbjct: 65  RCRALSLQGARLWLHTRSLALQPARGESIEALARRERYRALASMAREAGCDTVLLAHHRD 124

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ+ET  +++ R     G+       +I +   L  +RP+L   R  I+S++    + + 
Sbjct: 125 DQVETFLLQALRGAGAAGLSAM---PSIAWREGLTWARPWLDRPRSAIQSYVDAHALEFV 181

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           ED SN   R  R R+R  V             AL   ++  QD +  +       +    
Sbjct: 182 EDDSNASPRHARNRLRLTVMPALRQAFGDADVALTAAVQHAQDAQACMQALAEADLQAVS 241

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
                +I      +L + +  +  LLR       GQ   P    + R+   L     G  
Sbjct: 242 RADGLAI----DPMLALGAPRVRNLLRHWLRQSAGQ--PPAATLLRRLADELPHAPDGAW 295

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
                V+      L   R V  LP ++  P+
Sbjct: 296 RHAAGVVAAYRGRLSWRRDV--LPPIVADPD 324


>gi|17228427|ref|NP_484975.1| hypothetical protein all0932 [Nostoc sp. PCC 7120]
 gi|61216693|sp|Q8YYB8|TILS_ANASP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|17130278|dbj|BAB72889.1| all0932 [Nostoc sp. PCC 7120]
          Length = 342

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 102/281 (36%), Gaps = 9/281 (3%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LVAVSGG DS+     +  +L  +     +      DH  R  ++    +V ++   
Sbjct: 24  KRLLVAVSGGQDSL---CLIKLLLDLQPKWGWELGIAHCDHRWRADSQANADHVKNLAEN 80

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             ++      + +       A ARE RY  +S  A+  N   I+T HT  D+ ET+    
Sbjct: 81  WGVSFY---LETATKPVNSEATAREWRYQALSAIAQAHNYQYIVTGHTASDRAETLLYNL 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G  L  +        N+ + RP L   R+    F  +  +   ED +N D ++
Sbjct: 138 MRGTGADG--LQALTWQRPLTENILLVRPLLEITRKQTEQFCQEFQLPIWEDSTNQDLKY 195

Query: 200 ERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
            R R+R+ +          + +         +   V  L      +   ++     +   
Sbjct: 196 ARNRIRQELIPYLQANFNPQAELAIAQTAELLQADVEYLERTAQQLKEEAMEWEVGEEFL 255

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
             S+    LLR++  +          R M +++  + +   
Sbjct: 256 SSSSPSSLLLRLNRQVLQKAPLALQRRVMRQILQEILADAP 296


>gi|91978603|ref|YP_571262.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisB5]
 gi|91685059|gb|ABE41361.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisB5]
          Length = 347

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 85/287 (29%), Positives = 122/287 (42%), Gaps = 13/287 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+   F      PA I++AVSGG DS+ LL            G      ++VDH L
Sbjct: 9   ISAREASHLFADWKAVPA-IVLAVSGGPDSLALLWLAARWRKALKRGP-ALGVVTVDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V  +   L + H  + W   KP TGL AAAR ARY L+++ AK   AT I
Sbjct: 67  RPEAAREARAVKQLARTLDLPHRTLRWTGEKPTTGLPAAARAARYRLLAKAAKRFGATHI 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MTAHT DDQ ETV MR  R       GL+ M      D  + + RP L   ++ + + L 
Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMARETERDGAV-LVRPLLDVSKQRLIATLS 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAV 234
           +  I +  DPSN D RF R R R  +  +        +L     ++ +       + +  
Sbjct: 184 KAQIEYTTDPSNLDPRFTRPRWRELMPRLAAEGCDSRNLARFAARVARADAALELLVDGA 243

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281
              +              +     + + +   LL  + A  GG+   
Sbjct: 244 ERFLALRGGGSHPGRGYDAPAFSALAAEIRIRLLLRTLARVGGEGRP 290


>gi|238855042|ref|ZP_04645370.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 269-3]
 gi|260664826|ref|ZP_05865677.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934828|ref|ZP_06340062.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1]
 gi|238832286|gb|EEQ24595.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 269-3]
 gi|260561309|gb|EEX27282.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301100|gb|EFA93410.1| tRNA(Ile)-lysidine synthase [Lactobacillus jensenii 208-1]
          Length = 412

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 15/239 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA S G DS+ L+  L           +K      DH +RE +  E + +   C + +
Sbjct: 20  VIVACSAGPDSLALVDMLKDW-------PLKLIVAHFDHQIREDSYLETKLLQQYCQKNK 72

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   V  W     +T   AAAREARY  + E AK+ +A  ++TAH  DD LE + ++  R
Sbjct: 73  LMLCVEKWSKHVNKT--EAAAREARYNFLLELAKSWHADYLLTAHHGDDYLENILLKLIR 130

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                 M        +     + ++RP L   + ++  +LL +++++  D +N  +   R
Sbjct: 131 SGDPAEMSSLQAVGQM---AGVKLARPLLYYSKAELTKYLLDKHLAFITDETNLTNENLR 187

Query: 202 VRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            R+R  V  +   +  A+    + F    +                 +   + I + +L
Sbjct: 188 NRIRHQVVPLLKKENPAILKNGRVFGQKMLAYQGVAQKAFSDLELEPVAGSLRIKKKLL 246


>gi|237743038|ref|ZP_04573519.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 7_1]
 gi|229433598|gb|EEO43810.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 7_1]
          Length = 448

 Score =  182 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +    +F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKLQ---NFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +    V     +    L    RE RY   SE  K I A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKKIPVKEIAKEVGKTLEEVGREERYKFFSEIYKKIGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R  + +G+         +   N  I RP     ++DI ++L +  I +  D +N +
Sbjct: 140 FRLIRGASLQGL-------EGIKIKNNNIIRPISEIYKKDILNYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NDFTRNSIRLDLIPFIEKRYNIKFK 217


>gi|78066850|ref|YP_369619.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. 383]
 gi|77967595|gb|ABB08975.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. 383]
          Length = 473

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 135/378 (35%), Gaps = 27/378 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGMAPDARISIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   V +     +RL +A   +     +    G+ A ARE RYA + E  +      +  
Sbjct: 69  ADAWVAHAEASAARLGVAFESMHVDVPRDSGLGVEATARERRYAALDEMCERHGVATLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+            +++   RP LR  R  +  +  Q 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSVERVRPLLRLLRAQLERYATQH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
           +++W +D SN D R+ R  +R  V    L AL +    F+D   +     A    L+   
Sbjct: 188 DLAWIDDESNHDTRYARNALRIDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294
             +   +        L+ D+ + F       LLR      G    S     +M R +   
Sbjct: 244 AELDFAAAARDDGQALSRDALVAFDDTRGANLLRFWMRRLGLPGASAARLANMMRQLRAT 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++          +  T   +PE    WDG+  +      
Sbjct: 304 NVAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGRPHPESMLAWDGQEIWHLPGWR 363

Query: 349 DSLIQIGPQSYRKADVPS 366
            + +     +     VP 
Sbjct: 364 GTFVFAPADAGSADAVPE 381


>gi|331703058|ref|YP_004399745.1| tRNA(Ile) lysidine synthase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328801613|emb|CBW53766.1| tRNA(Ile) lysidine synthase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 401

 Score =  182 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 105/245 (42%), Gaps = 15/245 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+AVSGG DS+ LL  +  ++   +       A  V++  R  + ++   V+++C +
Sbjct: 10  KKYLIAVSGGPDSVFLLCNVVKLVEPNN-----LVACHVNYNFRSDSNNDQMIVTNLCKQ 64

Query: 80  LRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           L +   +++        +    + AR  RY   +  A       ++ AH  +D +ET  +
Sbjct: 65  LNLKLEILNINKDYSLLKQNFESWARVQRYDFFNMIASKYQIYNLLVAHNLNDLIETYLL 124

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           + QR+      GL      + +  +L + RP L  ++  I S+L    IS+  D +N+D 
Sbjct: 125 QLQRNNLVDYYGL----RPVSHYKDLVVYRPLLDIKKSQILSYLDTNKISYAIDSTNSDT 180

Query: 198 RFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           +++R ++R  + + +    L  +         ++  V+N +   I        + +  + 
Sbjct: 181 KYQRNKIRATLNENNFTKILDQINKANNNLNSIKKIVDNYLKNNIINNELNLTKELFLLD 240

Query: 254 QDILN 258
           Q  + 
Sbjct: 241 QTYIQ 245


>gi|224532919|ref|ZP_03673530.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23]
 gi|224512157|gb|EEF82547.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi WI91-23]
          Length = 440

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 25/240 (10%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +      +  ++++    +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+       + +  +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NI +  D +N  + + R RVR  +    L A+    K ++    +++         +
Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSKEFADYF 236


>gi|195942001|ref|ZP_03087383.1| hypothetical protein Bbur8_03899 [Borrelia burgdorferi 80a]
 gi|221217597|ref|ZP_03589066.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a]
 gi|224533444|ref|ZP_03674037.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a]
 gi|221192543|gb|EEE18761.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 72a]
 gi|224513406|gb|EEF83764.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi CA-11.2a]
          Length = 440

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 25/240 (10%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +      +  ++++    +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+       + +  +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NI +  D +N  + + R RVR  +    L A+    K ++    +++         +
Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSKEFADYF 236


>gi|225550286|ref|ZP_03771245.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a]
 gi|225369154|gb|EEG98608.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 118a]
          Length = 440

 Score =  182 bits (463), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 101/240 (42%), Gaps = 25/240 (10%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +      +  ++++    +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+       + +  +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NI +  D +N  + + R RVR  +    L A+    K ++    +++         +
Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSKEFADYF 236


>gi|307294669|ref|ZP_07574511.1| tRNA(Ile)-lysidine synthetase [Sphingobium chlorophenolicum L-1]
 gi|306879143|gb|EFN10361.1| tRNA(Ile)-lysidine synthetase [Sphingobium chlorophenolicum L-1]
          Length = 314

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 133/317 (41%), Gaps = 29/317 (9%)

Query: 7   ESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +R  V +L   A      VAVSGG DSM LL       S R        A +VDH LR
Sbjct: 8   ARLRQAVEALAENAASARFGVAVSGGPDSMALLDLAARAFSGR------VEAATVDHGLR 61

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           E + DE   V+D C    IAH+ +  K +  +  + + AR  RYAL+ E         ++
Sbjct: 62  EASADEAAMVADWCGNAGIAHATLHPKGA-VRGNVQSWARSQRYALLEEWRTAQGLDWLL 120

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DDQLET+ MR  R                +      + RP L  R+ ++ ++ L+
Sbjct: 121 TAHHADDQLETLLMRLNRGAGVG-------GLAGVRARQGVVLRPLLGMRKAELLAYALE 173

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           +++ + +DPSN+D RF+R  +R  +  +D                         +   + 
Sbjct: 174 QDLPYIDDPSNSDPRFDRAALRSALAGVDW-----IDAAAAGRSAAALAEAEEALDWMVA 228

Query: 244 VHMRSIIAISQDILNIDST---LLFYLLRVSAAICGGQISLP--GYRSMERVMLFLKSGK 298
                 +    D L +D T          V   I   Q   P     +++R++   + G+
Sbjct: 229 GIEADHVRPDGDGLALDRTDLPRELLRRLVLRMIGRLQPDAPPQRGEALDRLIAAARKGE 288

Query: 299 RGCVSIGRVVIDRRANF 315
           +  +SIGR+V+   A++
Sbjct: 289 K--MSIGRLVLKGGAHW 303


>gi|115526688|ref|YP_783599.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           BisA53]
 gi|115520635|gb|ABJ08619.1| tRNA(Ile)-lysidine synthetase [Rhodopseudomonas palustris BisA53]
          Length = 343

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/331 (25%), Positives = 140/331 (42%), Gaps = 20/331 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  ++   F      PA I++AVSGG DS+ L++      +    G  +  A+++DH L
Sbjct: 9   ISVQQAKLLFADWAKIPA-IVLAVSGGPDSLALMVLAARWRAALKRGP-ELIAVTIDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           RE +  E R V  +   L + H  + W+  KP +G+ AAAR ARYAL+++ A++  AT I
Sbjct: 67  REASAREARDVKKLAGNLGLPHKTLRWRGDKPTSGIPAAARAARYALLAKAARSTGATHI 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            TAHT DDQ ETV MR  R     G+              L ++RP L   +  + + L 
Sbjct: 127 FTAHTRDDQAETVLMRLSRGSGLAGLAAMARQSERC---GLQLARPLLGIAKSQLIATLA 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI---- 238
           +  I +  DPSN+D RF R R+RR +          +       R++  N    ++    
Sbjct: 184 KARIEFAVDPSNSDPRFTRPRLRRLMAAFAEEGCDSRNLARLAARLRRANEALEILVDSA 243

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---- 294
            + L         ++     + + +   LL       G +        +E ++  L    
Sbjct: 244 ERSLASDGGGAGWVAGSFAALPAEIRLRLLLRGIDRLGHEG-PAELGKVEALLQELDDAI 302

Query: 295 ------KSGKRGCVSIGRVVIDRRANFLWIT 319
                 +   R   ++   +I      L I 
Sbjct: 303 AKTATKRGENRLKRTLAGALITLAGGRLRIE 333


>gi|302835227|ref|XP_002949175.1| hypothetical protein VOLCADRAFT_59111 [Volvox carteri f.
           nagariensis]
 gi|300265477|gb|EFJ49668.1| hypothetical protein VOLCADRAFT_59111 [Volvox carteri f.
           nagariensis]
          Length = 409

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 121/367 (32%), Gaps = 56/367 (15%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +LVAVSGG DS+ LL AL  +   R     +   +  DH  R  +     +V +
Sbjct: 19  LGAAESVLVAVSGGQDSVCLLHALVDL---RPIWGWRLGVVHCDHGWRVDSAVNADFVRE 75

Query: 76  VCSR-LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + ++ L +   V +    +       AARE RY + ++ A      +++T HT  D+ ET
Sbjct: 76  LAAQHLDLPCYVRA--APQGAVPSERAAREWRYRVFADVAFAHGYDVVVTGHTATDRAET 133

Query: 135 VYMRSQRDYAEKGMGLSGMCD--------------------TILYDLNLWISRPFLRCRR 174
           + +   R     G+                                 ++ + RP L   R
Sbjct: 134 MLLNLLRGSGPDGLVALARSRPLGSYSPADPTCAPGGELDIPRARSRSVRLVRPLLEFSR 193

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
              + F+ Q  + +  D +N  +   R R+R  V          ++ +     ++V +A 
Sbjct: 194 SQTQEFVEQLALPYFHDTTNDCNDLRRNRLRNEVLPALRAGFNPRLDQALFRFLEVLDAD 253

Query: 235 AMLI--------------------PKYLTVHMRSIIAISQ----DILNIDSTLLFYLLRV 270
              +                      + +V  +           ++  +   +   ++R 
Sbjct: 254 LEYLTRVTEDLYDNVVSYEYRASSGDHSSVPAQGSSDERMLKLHELRRLPLAMQRRVVRK 313

Query: 271 SAAICGGQISLPGYRSMERVMLFLKSGK--RGCVSIGRVVIDRRANFLWITRAVRNLPTL 328
           + A  G   S   Y  + R +  L +          G +V   R   L +          
Sbjct: 314 AGARAGNAPSRVRYEDVARCLALLHAPNRSNSDSLCGGMVASVRDGHLVLW----TPKAA 369

Query: 329 ILYPEET 335
            + P  +
Sbjct: 370 AVEPGWS 376


>gi|53723754|ref|YP_103279.1| cell cycle protein mesJ [Burkholderia mallei ATCC 23344]
 gi|67642950|ref|ZP_00441700.1| tRNA(Ile)-lysidine synthase [Burkholderia mallei GB8 horse 4]
 gi|121601180|ref|YP_993468.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei SAVP1]
 gi|124383414|ref|YP_001029100.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10229]
 gi|126448974|ref|YP_001080976.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10247]
 gi|167001800|ref|ZP_02267592.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei PRL-20]
 gi|254177526|ref|ZP_04884181.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei ATCC 10399]
 gi|254200231|ref|ZP_04906597.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei FMH]
 gi|254209311|ref|ZP_04915657.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei JHU]
 gi|254358020|ref|ZP_04974293.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei 2002721280]
 gi|61216458|sp|Q62J40|TILS_BURMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52427177|gb|AAU47770.1| cell cycle protein mesJ [Burkholderia mallei ATCC 23344]
 gi|121229990|gb|ABM52508.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei SAVP1]
 gi|124291434|gb|ABN00703.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10229]
 gi|126241844|gb|ABO04937.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei NCTC 10247]
 gi|147749827|gb|EDK56901.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei FMH]
 gi|147750084|gb|EDK57155.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei JHU]
 gi|148027147|gb|EDK85168.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei 2002721280]
 gi|160698565|gb|EDP88535.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei ATCC 10399]
 gi|238524177|gb|EEP87611.1| tRNA(Ile)-lysidine synthase [Burkholderia mallei GB8 horse 4]
 gi|243062485|gb|EES44671.1| tRNA(Ile)-lysidine synthetase [Burkholderia mallei PRL-20]
          Length = 489

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 112/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+      +D      LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDAFVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|225551664|ref|ZP_03772608.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1]
 gi|225371691|gb|EEH01117.1| tRNA(Ile)-lysidine synthetase [Borrelia sp. SV1]
          Length = 440

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 25/242 (10%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +      +  ++++    +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+       + +  +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------SGIPGVNRNIIRPLLEVSRLEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NI +  D +N  + + R RVR  +    L A+    K ++    +++         +
Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSREFADYF 236

Query: 242 LT 243
             
Sbjct: 237 EK 238


>gi|326576214|gb|EGE26129.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis CO72]
          Length = 451

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 112/309 (36%), Gaps = 26/309 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M    + S+      L  PAH  + +A SGG DS+ L  A   +       ++  + + V
Sbjct: 1   MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            H  +      ++ V            ++    +K        AR+ARY           
Sbjct: 60  HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173
             ++M AH  +DQ ETV MR       +G+    +        +     + + RP+L+  
Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 174

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           R  I  F     + + +D +NTD  + R R+R+ +    L      ++        ++ A
Sbjct: 175 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIVRSAGLLSMA 234

Query: 234 VAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPG 283
             M+  +  T+     H  + +   Q     D LN+  +    +L           +LP 
Sbjct: 235 STMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291

Query: 284 YRSMERVML 292
              + + ++
Sbjct: 292 SHQLTQQVI 300


>gi|190345978|gb|EDK37960.2| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 471

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 142/372 (38%), Gaps = 46/372 (12%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  + +A+SGG DSM L   L           ++  +I++DH  R  ++ E + V+ V 
Sbjct: 22  APRRLAIALSGGVDSMCLAYLLSQYKQVYE-PSLELHSITIDHGYRSDSEIEAQKVAQVV 80

Query: 78  SRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
               I  SV   K   N    +     AR  RYA      +  N   ++ AH  DDQ+ET
Sbjct: 81  QNWGILPSVSRLKYSCNPAKISNFEEVARTMRYAEFERFCRGNNIEGLLVAHNLDDQIET 140

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSFLLQRNISW 188
              R +++ +  G+       T+    N      + + RP L+  + ++ S  +   I W
Sbjct: 141 FIQRLRQNSSIFGLAGLKRATTLPVATNEPNERPIPLFRPLLQFPKSELISTCIANKIQW 200

Query: 189 CEDPSNTD-DRFERVRVRRFVRDIDLHALYLK---MKKFQDLRVKVNNAVAMLIPKYLTV 244
            ED +N D +  ER   R  ++  D  ++  +   ++ F ++   VN     +    L V
Sbjct: 201 FEDSTNQDANLTERNFWRSELKKPDDESVINRDQFLQTFSEVETVVNELRKKVKALKLHV 260

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGG----QISLPGYRSMERVMLFLKSGKR- 299
                   +++   +   + + +L   +A+       QI  P   S +   ++ K  +  
Sbjct: 261 FGTEECEYARNG-TLSFQIQYSVLSNLSAMVFSRFLFQILHPISASRDYHWMYAKLERHA 319

Query: 300 -GCVSIGRVV-----------------IDRRANFLWITRAVRNLP--------TLILYPE 333
              +    VV                 I+R  + L      + +P        T I    
Sbjct: 320 VPRIMKHFVVSQNRVALRLTYLNILWNIERIEDTLHFHFERQPIPQNEYAHISTSINPDG 379

Query: 334 ETTVWDGRYQFQ 345
           ++T++D R+  +
Sbjct: 380 KSTLFDNRFWIR 391


>gi|167739278|ref|ZP_02412052.1| putative cell cycle protein [Burkholderia pseudomallei 14]
          Length = 489

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+            +++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALVDVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+      +D      LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDAFVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|254247829|ref|ZP_04941150.1| PP-loop [Burkholderia cenocepacia PC184]
 gi|124872605|gb|EAY64321.1| PP-loop [Burkholderia cenocepacia PC184]
          Length = 473

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 136/396 (34%), Gaps = 27/396 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGLPPDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   V +     +RL +A   +     +    G+ A ARE RYA + E  +      +  
Sbjct: 69  ADAWVAHAEGQAARLGVAFESMRVDVPRDSGLGIEATARERRYAALDEMGERHGVAALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+            +++   RP LR  R  +  +  Q 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGVSIERVRPLLRLLRAQLERYAEQH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAML 237
            ++W +D SN D R+ R  +R  V    L AL +    F+D               +  L
Sbjct: 188 ALAWIDDESNGDTRYARNALRVDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 238 IPKYLTVHMRSII-AISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFL 294
                 V  R    A+S+D L   D T    LLR      G    S     +M R +   
Sbjct: 244 AELDFAVAARDDGHALSRDALAGFDDTRGANLLRFWMRRLGLPGASATRLANMMRQLRAA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++          +  T    PE    WDG   +      
Sbjct: 304 HDAHALRVDHAGQCLRLYRDVVYWEAGDSSEPADDGTGTPQPEAALAWDGEEVWHLPGWR 363

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKE 384
            + +     +     VP  +       A +    + 
Sbjct: 364 GTFVFAPADAGSADAVPEALLRGTRLAARARAGGER 399


>gi|320334320|ref|YP_004171031.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
 gi|319755609|gb|ADV67366.1| tRNA(Ile)-lysidine synthase [Deinococcus maricopensis DSM 21211]
          Length = 529

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/319 (25%), Positives = 126/319 (39%), Gaps = 30/319 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG+DS+ LL+  H   +       +  A + DH LR  +  +V +V DVC+RL 
Sbjct: 19  VLVAVSGGADSVALLLGAHEAGA-------RVVAATFDHQLRADSAQDVAFVQDVCARLG 71

Query: 82  IAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   V    V+         + AAAR  RYA ++  AK     +I+TAHT  D  ET  M
Sbjct: 72  VPCEVGGADVARVARARGWSVEAAARTLRYAFLTRAAKARRVDVILTAHTARDDAETYLM 131

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
            + R  A           T + + N  + RP+LR  R D+ ++L  R  +W EDPSN D 
Sbjct: 132 EALRGEA---------HPTGIPEANGHVRRPWLRAARADVEAYLQARAQAWREDPSNADT 182

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            F R  VR  V  +    L  +    +D   +              +  R    + +  L
Sbjct: 183 YFTRNWVRHAVMPV----LTAREAGAEDRLARTARLAREDDAALEALAARVTPHMPKGAL 238

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDRRANFL 316
                +    +  +               ++ +   L +G    V++     +      L
Sbjct: 239 --PRAVRRRYVTRALRSARAAYHA---EHVDALADALANGGTTHVTLPGARTVTVTDGEL 293

Query: 317 WITRAVRNLPTLILYPEET 335
            +T      P   + P  T
Sbjct: 294 HLTPPATPTPEFPIPPGWT 312


>gi|146420868|ref|XP_001486387.1| hypothetical protein PGUG_02058 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 471

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 140/372 (37%), Gaps = 46/372 (12%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  + +A+SGG DSM L   L           ++  +I++DH  R  ++ E + V+ V 
Sbjct: 22  APRRLAIALSGGVDSMCLAYLLSQYKQVYE-PSLELHSITIDHGYRSDSEIEAQKVAQVV 80

Query: 78  SRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
               I  SV   K   N    +     AR  RYA      +  N   ++ AH  DDQ+ET
Sbjct: 81  QNWGILPSVSRLKYSCNPAKISNFEEVARTMRYAEFERFCRGNNIEGLLVAHNLDDQIET 140

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLN------LWISRPFLRCRREDIRSFLLQRNISW 188
              R +++ +  G+       T+    N      + + RP L+  + ++ S  +   I W
Sbjct: 141 FIQRLRQNSSIFGLAGLKRATTLPVATNEPNERPIPLFRPLLQFPKSELISTCIANKIQW 200

Query: 189 CEDPSNTD-DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            ED +N D +  ER   R  ++  D  ++  +  +F    ++V   V  L  K   + + 
Sbjct: 201 FEDSTNQDANLTERNFWRSELKKPDDESVINR-DQFLQTFLEVETVVNELRKKVKALKLH 259

Query: 248 SIIAISQDILN---IDSTLLFYLLRVSAAICGG----QISLPGYRSMERVMLFLKSGKR- 299
                  +      +   + + +L   +A+       QI  P   S +   ++ K  +  
Sbjct: 260 VFGTEECEYARNGTLSFQIQYSVLSNLSAMVFSRFLFQILHPISASRDYHWMYAKLERHA 319

Query: 300 -GCVSIGRVV-----------------IDRRANFLWITRAVRNLP--------TLILYPE 333
              +    VV                 I+R  + L      + +P        T I    
Sbjct: 320 VPRIMKHFVVSQNRVALRLTYLNILWNIERIEDTLHFHFERQPIPQNEYAHISTSINPDG 379

Query: 334 ETTVWDGRYQFQ 345
           ++T++D R+  +
Sbjct: 380 KSTLFDNRFWIR 391


>gi|134277776|ref|ZP_01764491.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 305]
 gi|254297086|ref|ZP_04964539.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 406e]
 gi|134251426|gb|EBA51505.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 305]
 gi|157807057|gb|EDO84227.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 406e]
          Length = 489

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+ D+ +         LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|262277487|ref|ZP_06055280.1| cell cycle protein mesj [alpha proteobacterium HIMB114]
 gi|262224590|gb|EEY75049.1| cell cycle protein mesj [alpha proteobacterium HIMB114]
          Length = 333

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/320 (22%), Positives = 128/320 (40%), Gaps = 15/320 (4%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           + F+   +     ++ VSGG DSM L         DR+     F  + +DH +R+ +  E
Sbjct: 23  KNFLDKNLKEKKFVIGVSGGPDSMALAYLSKVYSIDRNK---TFECVIIDHGVRKNSGKE 79

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + V     + +I  ++   K  +  +   + AR  RY  I E  K      I+  H  D
Sbjct: 80  AKKVKSALLKHKIKSNIFKIKF-ENSSNFHSEARVKRYDKIIEFCKRKKVKKILLGHHLD 138

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ+E  Y+R  R       GLS +     Y  N++  RPFL  ++ ++     +      
Sbjct: 139 DQVENFYIRLSRGSGL--TGLSPIKKVSKY-KNIYFLRPFLNTKKNELVKIAKKNFSFSV 195

Query: 190 EDPSNTDDRFERVRV---RRFVRDIDL--HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            DPSN  D++ R RV   R F+    L    L   +         +       + KY+T 
Sbjct: 196 NDPSNFKDKYLRSRVRKLRNFMEKEGLGDQRLLKTLTNLDKASEALEFYSNQAVKKYITK 255

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
              +I  IS+ +    + ++F  +     +   +   P  + ++R++  L       V++
Sbjct: 256 -KGNISNISKKLFKEPNEVIFRSISFF--LTKKKSYPPRAKGIDRLITDLSKNNTNKVTL 312

Query: 305 GRVVIDRRANFLWITRAVRN 324
           G  V +   N + + +  R 
Sbjct: 313 GGYVFENGLNLVKVKKENRK 332


>gi|332662835|ref|YP_004445623.1| tRNA(Ile)-lysidine synthase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331649|gb|AEE48750.1| tRNA(Ile)-lysidine synthase [Haliscomenobacter hydrossis DSM 1100]
          Length = 449

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/349 (20%), Positives = 123/349 (35%), Gaps = 36/349 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E +   +  L      L+AVSGG DS+ L    +          I F+   ++ 
Sbjct: 1   MLKEFQEYLTKLIGDLPSNYQFLLAVSGGKDSVVLADLFYC-------SGIPFAIAHINF 53

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAK 115
            LR E +  + R+V  +  R  +             ++ +     AAR  RY  + +   
Sbjct: 54  QLRGEESDGDERFVKALAKRCEVECFTMLADTKAYGAEHKLSTQMAARTIRYTWLEQTRA 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           T N   I+TAH  +D +ET+     +    KG       +  +  +N  + RP L   R+
Sbjct: 114 THNLDYIVTAHHLNDTVETILYNLAKGSGIKG-------NLGIPAINGRVIRPLLFATRK 166

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------KFQDLR 227
            I ++  Q  ++  ED SN    + R  +R  V    L  L   ++         +Q + 
Sbjct: 167 SIDAYYTQEQLAHREDASNAQVGYARNWIRHQVVP-GLQKLNPSLELTIGRNMVYWQQIY 225

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRS 286
                  A L  K+ T H  +     +     D   L  LL       G G   + G   
Sbjct: 226 AWFEQEAAQL--KHHTWHSDAHRHTIELDSIQDHPALHTLLFHWLQTFGFGAEQIAG--- 280

Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335
           +   +L  K GK       + ++      + I          +L+PE  
Sbjct: 281 ISAAVLAQKQGKLFLSKTHKALL--HQGKIIIEAQSTQGQEAVLWPEGE 327


>gi|296113823|ref|YP_003627761.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4]
 gi|295921517|gb|ADG61868.1| tRNA-lysidine synthetase [Moraxella catarrhalis RH4]
          Length = 451

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 28/310 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-SAIS 57
           M    + S+      L  PAH  + +A SGG DS+ L  A   +   R    I+  + + 
Sbjct: 1   MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLL--HRQGKIIRLPTILH 58

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           V H  +      ++ V            ++    +K        AR+ARY          
Sbjct: 59  VHHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ- 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRC 172
              ++M AH  +DQ ETV MR       +G+    +        +     + + RP+L+ 
Sbjct: 115 -GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKI 173

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            R  I  F     + + +D +NTD  + R R+R+ +    L      ++        ++ 
Sbjct: 174 SRNQISQFAKAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIVRSAGLLSM 233

Query: 233 AVAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLP 282
           A  M+  +  T+     H  + +   Q     D LN+  +    +L           +LP
Sbjct: 234 ASTMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALP 290

Query: 283 GYRSMERVML 292
               + + ++
Sbjct: 291 PSHQLTQQVI 300


>gi|262066540|ref|ZP_06026152.1| tRNA(Ile)-lysidine synthase [Fusobacterium periodonticum ATCC
           33693]
 gi|291379774|gb|EFE87292.1| tRNA(Ile)-lysidine synthase [Fusobacterium periodonticum ATCC
           33693]
          Length = 452

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 119/314 (37%), Gaps = 26/314 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSR- 79
           I+V  SGG DS+ L+  L  +     F K K   + ++H LR E A  +  +  D   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKLQ---DFFKFKIYLVHINHLLRGEDADADENFSYDYARKN 79

Query: 80  -LRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            L I    +  K    +TG  L    RE RY   SE    + A  I TAH  DDQLET  
Sbjct: 80  SLEIFAKRIPVKEIAKETGKTLEEVGREERYNFFSEIYNKVGANKIATAHNKDDQLETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R  + +G+         +   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIRGTSLQGL-------EGIKLKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK--FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           + F R  +R  +         +K K   F  +     N    L+         + + + +
Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFKDKLFSLIEEIRENNKKNLLDLDEYTDKENRLTLEK 252

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDR 311
               I +  LF    +       +        ++ +   ++S     + +    RVV D 
Sbjct: 253 ----IKALSLFERKNLLVLFLNKKNIKINRNKIDEINSLIRSNGTKKIDLDLNHRVVKDY 308

Query: 312 RANFLWITRAVRNL 325
               L+I +    +
Sbjct: 309 H--HLYIEKKEEKI 320


>gi|326564469|gb|EGE14695.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 46P47B1]
 gi|326574889|gb|EGE24819.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 101P30B1]
          Length = 451

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 112/309 (36%), Gaps = 26/309 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M    + S+      L  PAH  + +A SGG DS+ L  A   +       ++  + + V
Sbjct: 1   MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            H  +      ++ V            ++    +K        AR+ARY           
Sbjct: 60  HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173
             ++M AH  +DQ ETV MR       +G+    +        +     + + RP+L+  
Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 174

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           R  I  F     + + +D +NTD  + R R+R+ +    L      ++        ++ A
Sbjct: 175 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIIRSAGLLSMA 234

Query: 234 VAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPG 283
             M+  +  T+     H  + +   Q     D LN+  +    +L           +LP 
Sbjct: 235 STMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291

Query: 284 YRSMERVML 292
              + + ++
Sbjct: 292 SHQLTQQVI 300


>gi|237812903|ref|YP_002897354.1| tRNA(Ile)-lysidine synthase [Burkholderia pseudomallei MSHR346]
 gi|237506736|gb|ACQ99054.1| tRNA(Ile)-lysidine synthase [Burkholderia pseudomallei MSHR346]
          Length = 489

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 112/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+      +D      LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDAFVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|257456705|ref|ZP_05621895.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Treponema vincentii ATCC 35580]
 gi|257445898|gb|EEV20951.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Treponema vincentii ATCC 35580]
          Length = 485

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 27/244 (11%)

Query: 6   IESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +++V   ++ +V  +  H L+A SGG+DS  LL+A   +    S    + SA++V+H +R
Sbjct: 7   VDAVFHNLKPIVGNSSCHFLLACSGGADSTALLLAFRQLQPVLS---CRLSAVTVNHNIR 63

Query: 64  --ETAKDEVRYVSDVCSRLR--IAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             E +  +  +V+ +CS     I   +       V+    +   G   AAR  RY L  +
Sbjct: 64  SAEESAADSAFVAGLCSGFEPAIPCIIEEIPAGEVARYAKERGRGTEDAARTLRYRLFEK 123

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A +++A  I+TAH   D  ETV MR  +      + +  +             RP +  
Sbjct: 124 TADSVSADFIVTAHNLSDVYETVLMRLFQGGGTASLSIMPV-------RRGRYLRPLITV 176

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            R  I  FL Q+ I W ED +N  + + R R+R ++    L AL      ++    K   
Sbjct: 177 ERNSIEEFLRQQGIVWREDATNAGNTYLRNRIRHYL----LPALSQAFGGWRAGLDKTLQ 232

Query: 233 AVAM 236
            +A+
Sbjct: 233 RIAL 236


>gi|209886399|ref|YP_002290256.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5]
 gi|209874595|gb|ACI94391.1| tRNA(Ile)-lysidine synthase [Oligotropha carboxidovorans OM5]
          Length = 338

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 148/328 (45%), Gaps = 19/328 (5%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+ + F      PA +++AVSGG DS+ LL            G     A++VDH L
Sbjct: 11  ISAQEARQLFAGWKNLPA-LVLAVSGGPDSVALLWLAARWRRSLKKGP-DLLAVTVDHGL 68

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V  + S L IAH  ++W+ +KP+TG+  AAREARY L++  A++ +A  I
Sbjct: 69  RAAAAHEAREVKRLASALGIAHRTLTWRGTKPKTGVPEAAREARYELLARAARSASAVAI 128

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            TAHT DDQ ET+ MR  R       GL+GM         + + RP L   +  + + L 
Sbjct: 129 ATAHTQDDQAETILMRLTRGSGL--TGLAGMAAQSERH-GVALLRPLLDVPKARLVATLN 185

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----- 237
           +  I++  DP+N D  + R R+R  +  +           F  L ++++ A A L     
Sbjct: 186 RAKIAYANDPTNHDPAYTRSRLRAMMPVLASEG--ADAHTFARLAMRLSRADAALERMTD 243

Query: 238 -IPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVML--- 292
              +YL +           +   +   +   LLR + A     +  P    +E ++    
Sbjct: 244 GAERYLRLRGGGGEGFDAALFATLTEEIQVRLLRRALAAH-VSVHAPELGQIEALLRGMA 302

Query: 293 -FLKSGKRGCVSIGRVVIDRRANFLWIT 319
              + G+R   S+G + +      L + 
Sbjct: 303 EAEREGRRFKRSLGGMTVGVEKGRLVVR 330


>gi|161504644|ref|YP_001571756.1| hypothetical protein SARI_02765 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865991|gb|ABX22614.1| hypothetical protein SARI_02765 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 365

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/326 (19%), Positives = 116/326 (35%), Gaps = 29/326 (8%)

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C R ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  
Sbjct: 2   CERWQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFL 59

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R     G+   G            + RP L   R+ +  + ++  + W ED SN D
Sbjct: 60  LALKRGSGPAGLSAMGERSPFA---GTQLLRPLLEETRKTLELWAVRHGLCWIEDESNQD 116

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKYLTVHMRSIIAIS 253
           D ++R  +R       L  L  +   F     +     A    L+ + LT  +   I  +
Sbjct: 117 DAYDRNFLRLR----ALPLLQRRWPHFSAAVARSAALCAEQERLLDELLTSDLTDCI-TA 171

Query: 254 QDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGR 306
           +  L +   +    +R +A     +      +P   ++ER+       +     C+  G 
Sbjct: 172 RGTLRLSPLMSMSDVRRAAILRRWLATRNAPMPSRDALERIWREVALARDDASPCLRFGD 231

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS 366
             I R  + LW       + ++    E T  W        L   L  +      +  +P 
Sbjct: 232 HEIRRYQSQLWW------IKSIAGQSETTIAWPVWQTPLALPAGLGSVQLVPGGELRLPR 285

Query: 367 GIPPIIAQ---RALSSMPSKEGGKPL 389
               +  +     L  +  + GG+ L
Sbjct: 286 EEESVSIRFKASGLLHIVGRHGGRKL 311


>gi|307720468|ref|YP_003891608.1| tRNA(Ile)-lysidine synthetase [Sulfurimonas autotrophica DSM 16294]
 gi|306978561|gb|ADN08596.1| tRNA(Ile)-lysidine synthetase [Sulfurimonas autotrophica DSM 16294]
          Length = 330

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +  +  +  L+A S G DS  LL  L           I F    VD+  RE +K+EV Y 
Sbjct: 7   KEDLRKSKNLLAFSAGGDSTALLFMLLE-------NNIPFDIAIVDYGTREQSKEEVAYA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +  +     +V   +  + ++   A AR+ RY       +  +   ++TAH   D+ E
Sbjct: 60  KALAKQYNFTCNVH--QAKEIESNFEANARKIRYDFFETLIQEHDYDTLLTAHHLGDRFE 117

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            + M+  +        L+GM +  L      + RP L   ++++  +L   NI + ED S
Sbjct: 118 WMLMQFCKGAGC--AELAGMQEKALR-NGYILYRPLLHVDKQELLEYLHGNNIKYFEDKS 174

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           N+D+++ R   R       L      +KK
Sbjct: 175 NSDEKYTRNTFRHNYTKPLLEKYLQGIKK 203


>gi|53719849|ref|YP_108835.1| putative cell cycle protein [Burkholderia pseudomallei K96243]
 gi|254184420|ref|ZP_04891010.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1655]
 gi|61216466|sp|Q63ST1|TILS_BURPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|52210263|emb|CAH36242.1| putative cell cycle protein [Burkholderia pseudomallei K96243]
 gi|184214951|gb|EDU11994.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1655]
          Length = 489

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+ D+ +         LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|126454111|ref|YP_001066846.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106a]
 gi|242315465|ref|ZP_04814481.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106b]
 gi|126227753|gb|ABN91293.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106a]
 gi|242138704|gb|EES25106.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1106b]
          Length = 492

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+ D+ +         LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|76811958|ref|YP_334064.1| cell cycle protein mesJ [Burkholderia pseudomallei 1710b]
 gi|167916722|ref|ZP_02503813.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 112]
 gi|217420494|ref|ZP_03451999.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 576]
 gi|226199017|ref|ZP_03794580.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pakistan
           9]
 gi|254191453|ref|ZP_04897957.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pasteur
           52237]
 gi|254197535|ref|ZP_04903957.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei S13]
 gi|254258079|ref|ZP_04949133.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1710a]
 gi|76581411|gb|ABA50886.1| cell cycle protein mesJ [Burkholderia pseudomallei 1710b]
 gi|157939125|gb|EDO94795.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pasteur
           52237]
 gi|169654276|gb|EDS86969.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei S13]
 gi|217395906|gb|EEC35923.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 576]
 gi|225929117|gb|EEH25141.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei Pakistan
           9]
 gi|254216768|gb|EET06152.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 1710a]
          Length = 492

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+ D+ +         LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|134296080|ref|YP_001119815.1| tRNA(Ile)-lysidine synthetase [Burkholderia vietnamiensis G4]
 gi|134139237|gb|ABO54980.1| tRNA(Ile)-lysidine synthetase [Burkholderia vietnamiensis G4]
          Length = 468

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 132/380 (34%), Gaps = 27/380 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  L   A I +A SGG DS  LL       + R  G  +  A+ V H L   
Sbjct: 14  LDAVGAALSGLPADARIAIAYSGGLDSTVLLD-----AAVRVAGAARCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   V Y      RL +          +    G+ A ARE RYA +    +      +  
Sbjct: 69  ADAWVAYAQATAERLGVTFESERVDVPRDSGLGIEATARERRYAALDAMCERHGVAALWI 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RP LR  R  +  +  QR
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPLLRLLRAQLERYAAQR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
            ++W +D SN D R+ R  +R  V    L AL +    F+D   +     A    L+   
Sbjct: 188 ELAWIDDESNADTRYARNALRLDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294
             +            L+ D+ + F       LLR      G    S     +M R +   
Sbjct: 244 AELDFAGAARDDGRALSRDALIAFDDTRGANLLRYWMRKLGLPGASAGRLANMMRQLRDA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT----LILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++   A    P        +P+ + VW+G   +      
Sbjct: 304 HDAHALRVDHAGQCLRLYRDAVYWELADSAEPPDDGTGTPHPDSSLVWNGDEVWHLPAWR 363

Query: 349 DSLIQIGPQSYRKADVPSGI 368
            + +    ++     VP  +
Sbjct: 364 GTFVFAAAEAGSDGAVPEAL 383


>gi|294783791|ref|ZP_06749115.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 1_1_41FAA]
 gi|294480669|gb|EFG28446.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 1_1_41FAA]
          Length = 452

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 118/311 (37%), Gaps = 30/311 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +    +F K K   + ++H LR E A  +  +  D   R 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKLQ---NFFKFKIYLVHINHLLRGEDADADESFSYDYAKRN 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V    V     K    L    RE RY   SE    + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFVKRIPVKEIAKKTGKTLEEVGREERYNFFSEIYNKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G  L G+    L   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLVR-----GTSLQGLEGIKLKYSN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK--FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           + F R  +R  +         +K K   F  +     N     +     V   + + + +
Sbjct: 193 NEFTRNSIRLDLIPFIEKRYNIKFKDKLFSLIEEIRENNKKNFLDLDEYVDEENRLTLEK 252

Query: 255 ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVVI 309
                +    + L+ +L + +  I            ++ +   +KS     + +     I
Sbjct: 253 IKTLSLFERKNLLVHFLNKKNIKI--------NRNKIDEINSLIKSDGTKKIDLDLNFRI 304

Query: 310 DRRANFLWITR 320
            +  + L+I +
Sbjct: 305 VKDYHHLYIEK 315


>gi|15595133|ref|NP_212922.1| hypothetical protein BB0788 [Borrelia burgdorferi B31]
 gi|216264898|ref|ZP_03436890.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a]
 gi|218249437|ref|YP_002375287.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7]
 gi|223889299|ref|ZP_03623886.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b]
 gi|225549361|ref|ZP_03770333.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a]
 gi|226321219|ref|ZP_03796753.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805]
 gi|226321253|ref|ZP_03796781.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26]
 gi|6136576|sp|O51728|TILS_BORBU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695536|sp|B7J0N4|TILS_BORBZ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|2688713|gb|AAC67121.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|215981371|gb|EEC22178.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 156a]
 gi|218164625|gb|ACK74686.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi ZS7]
 gi|223885220|gb|EEF56323.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 64b]
 gi|225369989|gb|EEG99430.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 94a]
 gi|226233285|gb|EEH32036.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi Bol26]
 gi|226233373|gb|EEH32120.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi 29805]
 gi|312147795|gb|ADQ30454.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi JD1]
 gi|312149540|gb|ADQ29611.1| tRNA(Ile)-lysidine synthetase [Borrelia burgdorferi N40]
          Length = 440

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 25/240 (10%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAK 67
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R      
Sbjct: 14  KFYKKNSLDKNRVIVAFSGGADSTALLLNLKYYLSN------NVIAFYFAHFIRSDNEQN 67

Query: 68  DEVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +      +  ++++    +   AR+ RY  +    K   A  
Sbjct: 68  QEIEHVKGFCDLYNIALQIKKCDIDIKSESARLGVSIEELARKFRYIALENALKENGANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G  LSG+       +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDG--LSGIPS-----VNRNIIRPLLEVSRLEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NI +  D +N  + + R RVR  +    L A+    K ++    +++         +
Sbjct: 181 SLNNIGFFVDSTNAQNLYLRNRVRNNL----LPAIKKVFKGYEKCLKRISEFSKEFADYF 236


>gi|167903369|ref|ZP_02490574.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei NCTC
           13177]
          Length = 492

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 112/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGACFGAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+      +D      LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDAFVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|329943107|ref|ZP_08291881.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci Cal10]
 gi|332287689|ref|YP_004422590.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci 6BC]
 gi|325506432|gb|ADZ18070.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci 6BC]
 gi|328814654|gb|EGF84644.1| tRNA(Ile)-lysidine synthetase [Chlamydophila psittaci Cal10]
          Length = 317

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 100/262 (38%), Gaps = 19/262 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  F  +L      L+A+SGGSDS+ LL  L S         + F+A+ VD+  RE++
Sbjct: 10  KRLEVFFSALDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESS 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             E   +   C    +   V    +  K       AAR  RY L  +  +  N   I  A
Sbjct: 63  YREAEELKLRCQEEGVPLIVNHVPSKDKTSKDPENAARRYRYELFYKICREENLAGIFLA 122

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +DQ ETV  R           L GM     Y   + + RP L   ++ +   L   N
Sbjct: 123 HHANDQAETVLKRVLEGAHLG--NLKGMTSEASY-NGIPLLRPLLHIPKQILIHTLDAEN 179

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAML 237
           I +  D +NTD+R+ R R+R  +               L    +  ++L   +       
Sbjct: 180 IPYVHDVTNTDERYLRARMRNKIFPWLEEIFGKNITQPLLTLAQDSEELSCYMKQQAQPF 239

Query: 238 IPKYLTVHMRSIIAISQDILNI 259
           +      H    I I + ++  
Sbjct: 240 LENIRQEHTTWSIEIPKSLIEQ 261


>gi|220925335|ref|YP_002500637.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060]
 gi|254789037|sp|B8IP16|TILS_METNO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|219949942|gb|ACL60334.1| tRNA(Ile)-lysidine synthetase [Methylobacterium nodulans ORS 2060]
          Length = 339

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/330 (24%), Positives = 136/330 (41%), Gaps = 23/330 (6%)

Query: 7   ESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           E  R   R L   A   +++AVSGG DS  L+       + R    +     +VDH LR 
Sbjct: 12  EFARRLDRWLGPGAAGGVVLAVSGGPDSTALM-----GGAARLPPLVPVMVATVDHGLRP 66

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            A  E   V+ +  RL + H +++W   KP+T L  AAR ARY L+ + A+   A  ++T
Sbjct: 67  EAAAEAEAVARLAGRLGLPHRILAWTGPKPRTRLQEAARAARYRLLLDLAREQGAAALLT 126

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AHT DDQ ETV MR        G+G     + + +   L + RPFL   +  + +     
Sbjct: 127 AHTLDDQAETVLMRLCAGSGPAGLGG---IEPVRHLGGLALVRPFLDLPKARLVATCAAE 183

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT- 243
              +  DP N D RF R R+RR +  +    L          R++ N A           
Sbjct: 184 GWPFVVDPGNADARFARGRLRRVMPHLAAEGLTAARLARLAERLRRNEAALAAAADAALD 243

Query: 244 ------VHMRSIIAISQDILNIDSTLLFYLLRVSAA-ICGGQISLPGYRSME-----RVM 291
                      ++  ++ +  +   +   +L  + A + GG         +E     R++
Sbjct: 244 ALARPGARPGGMMLDARGLAVLPEAVALRVLARAIATVVGGNARPARLERLEDVLFGRLL 303

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
             + +G R   ++G  ++      L ++  
Sbjct: 304 PAIAAGGRLRCTLGGALLHLSGGSLSLSPE 333


>gi|330814391|ref|YP_004358630.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487486|gb|AEA81891.1| tRNA(Ile)-lysidine synthetase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 346

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 135/312 (43%), Gaps = 13/312 (4%)

Query: 24  VAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           VA  SGG DS+ L  A   + S+++   + F  I VDH +R  +  E + V     ++  
Sbjct: 41  VACISGGPDSLALA-ACSKIYSEKNHTNV-FYLI-VDHNIRANSALEAKRVQKNLLKISA 97

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +++ K    +  +   AR+ RY ++S+  K    + ++TAH  DDQ+E  Y+R  R 
Sbjct: 98  KAKILTIKKIISR-SIQKNARDHRYKIMSDFCKKNKISYMLTAHHLDDQIENFYIRLSRG 156

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +G+    + +       + I RPFL   ++ +     +   ++ +DPSNT+DRF R 
Sbjct: 157 SGLQGLSSMKIAEKN--KEKITIVRPFLSSSKKILIQVAKKIFTTFIKDPSNTNDRFLRS 214

Query: 203 RVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R+R+   +++   L        +      +  ++  V     KY+   + + I I   + 
Sbjct: 215 RIRKLKSNLEKEGLDQTRILKTIDNLNTAKEAIDFYVCYSEKKYIQTKLNNKIQIDLKLF 274

Query: 258 N-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
               S + + ++         +   P  + +  +M  ++      V++G  + +     +
Sbjct: 275 QEQPSEISYRVIASLIKKKSKKDYPPRAKGILNLMDSVQKKNFKRVTLGGFMFNLSGKKI 334

Query: 317 WITRAVRNLPTL 328
            +T+  RN   +
Sbjct: 335 IMTKENRNNKEI 346


>gi|225011777|ref|ZP_03702215.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A]
 gi|225004280|gb|EEG42252.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-2A]
          Length = 434

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 142/401 (35%), Gaps = 54/401 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
              IL+A SGG DS  +   L          ++ FS    +  LR E +  +   V   C
Sbjct: 18  GKQILLAHSGGLDSSVMADLLVK-------AQVPFSVAHCNFQLRGEESNSDAGLVKAWC 70

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I    V +   +     +     AAR+ RY+   E         ++TAH  +DQLE
Sbjct: 71  FDNSIPFFSVEFATLEYKKYHKKSTQLAARDLRYSWFDEIMDGYAFDFLVTAHHLNDQLE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  + + R       GL G+ +         + RP     ++++  +  +  + W ED S
Sbjct: 131 TFLINTTRGTGV--SGLLGIQER------EHLLRPLRSIPKKELIQYAKEHGVIWNEDSS 182

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N  D + R  VR  V  I    +   +  FQ     +       I   L    + +  I 
Sbjct: 183 NASDDYLRNEVRHHVIPIIEDIVPNALHNFQSTLDHLL-LTNDFIQTSLETLKQKLFIIE 241

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERV-MLFLKSGKRGCVSIGRVVIDR 311
           ++ + I   +   L   S   C   +  P G+ S E V +L  +SGK       R++  R
Sbjct: 242 KEHIKI--EIKGLLKLPSLLFCVHHLFSPYGFNSKEVVKLLNSESGKILYSETHRLI--R 297

Query: 312 RANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSD---------SLIQIGPQSYRK- 361
             +FL +         +IL           +   N S           L+ I  +S+R  
Sbjct: 298 DRSFLILIEKRLEEEQIIL-----------FDPNNPSSNLPINLKCEHLVNIDSRSWRPN 346

Query: 362 --ADVPSGIPPIIAQRALSS----MPSKEGGKPLLAPFSRF 396
             A     I   +  R         P+   GK LL+ F + 
Sbjct: 347 QAALDQKLIKKHLFLRKFKKGDYFYPAGMKGKKLLSKFFKD 387


>gi|27382258|ref|NP_773787.1| hypothetical protein bll7147 [Bradyrhizobium japonicum USDA 110]
 gi|61216753|sp|Q9XBG6|TILS_BRAJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|5531226|emb|CAB51028.1| YaeN protein [Bradyrhizobium japonicum]
 gi|27355429|dbj|BAC52412.1| yaeN [Bradyrhizobium japonicum USDA 110]
          Length = 361

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 111/213 (52%), Gaps = 5/213 (2%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+ + F      PA +++AVSGG DS+ L+          + G  + + ++VDH L
Sbjct: 9   ISAREAKQLFAELKSAPA-LVLAVSGGPDSIALMWLAARWQRSLARGP-RLTVVTVDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V  + + L + H  + W+ +KP+TGL AAAREARY L+ + A++  A+ +
Sbjct: 67  RAEAAREAREVKRLATELGLPHRTLRWRGAKPKTGLPAAAREARYRLLMQAARSAGASHV 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAHT DDQ ET+ MR  R     G+        +     + ++RP L   +  + + L 
Sbjct: 127 LTAHTRDDQAETLLMRLVRGSGLAGLSAM---ARLTERDGIVLARPLLDVPKAQLIATLK 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +  I + +DP+N D  F R R+R  +  +    
Sbjct: 184 RAKIGFADDPTNRDTAFTRPRLRALLPQLAAEG 216


>gi|75906734|ref|YP_321030.1| PP-loop [Anabaena variabilis ATCC 29413]
 gi|75700459|gb|ABA20135.1| PP-loop [Anabaena variabilis ATCC 29413]
          Length = 342

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/297 (19%), Positives = 109/297 (36%), Gaps = 13/297 (4%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I S   F R+      +LVAVSGG DS+     +  +L  +     +      DH  R
Sbjct: 12  RTIRSRHLFERN----QRLLVAVSGGQDSL---CLIKLLLDLQLKWGWELGIAHCDHRWR 64

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             ++    +V ++     ++      + +       A ARE RY  +S  A+  N   I+
Sbjct: 65  VDSQANADHVKNLSETWGVSFY---LETASKPINSEATAREWRYETLSAIAQAYNYEYIV 121

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT  D+ ET+     R     G  L  +        N+ + RP L   R+    F  +
Sbjct: 122 TGHTASDRAETLLYNLMRGTGADG--LQALTWQRPLTENILLVRPLLEITRKQTEQFCQE 179

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYL 242
             +   ED +N D ++ R R+R+ +          + +         +   V  L     
Sbjct: 180 FQLPIWEDSTNQDLKYARNRIRQELIPYLQANFNPQAELAIAQTAELLQADVEYLERTAQ 239

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
            +  +++     +     S+   +LLR++  +          R M +V+  + +   
Sbjct: 240 QLKEKAMEWEVGEEFLSPSSPSPFLLRLNRQVLQKAPLALQRRVMRQVLQEILADAP 296


>gi|288819201|ref|YP_003433549.1| cell cycle protein [Hydrogenobacter thermophilus TK-6]
 gi|288788601|dbj|BAI70348.1| cell cycle protein [Hydrogenobacter thermophilus TK-6]
 gi|308752783|gb|ADO46266.1| tRNA(Ile)-lysidine synthetase [Hydrogenobacter thermophilus TK-6]
          Length = 316

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 68/328 (20%), Positives = 134/328 (40%), Gaps = 28/328 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDH 60
            L  + +++   + +   A +LVA SGG DS+     + ++L  + F K+ + +   ++H
Sbjct: 5   LLRKVITLQRRKKLIPEHASVLVAFSGGIDSV---ALVLALLELKDFFKLKRVALAHINH 61

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKT 116
            +R  +  +  +  +   R R+   V  +   K        L A ARE RY  +    + 
Sbjct: 62  GIRAQSDRDEDFAVEFARRKRLEIFVERFHVKKMAEEEGENLEALAREVRYKALRSIKQK 121

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               +I TAH  +D +ETV +   R    +G+       T   +    I RP     +E+
Sbjct: 122 EGFDIIATAHHLNDLVETVILWLVRGAGLEGL-------TGFDEKTEDIVRPLYLVTKEE 174

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNA 233
           I+ F++ R  +W ED +N D  + R R+R  V         +L   + + +D+  K    
Sbjct: 175 IKDFVISRGEAWVEDATNYDINYARNRIRHRVLPELKKINASLEDSVLRLRDILKKEGEF 234

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           +     K L    +        + ++   L   ++ +   I          R +++V+  
Sbjct: 235 INEQALKALKECTQGQALRRDVLTSLHPALQRRVIYLWLGIR-------DLRKIDQVLSL 287

Query: 294 LKSGKRGCVSIG-RVVIDRRANFLWITR 320
            K G  G + +G    +    ++L++ R
Sbjct: 288 AKKG--GIMELGDGKRLKAEGDYLYLQR 313


>gi|238927155|ref|ZP_04658915.1| tRNA(Ile)-lysidine synthetase [Selenomonas flueggei ATCC 43531]
 gi|238884937|gb|EEQ48575.1| tRNA(Ile)-lysidine synthetase [Selenomonas flueggei ATCC 43531]
          Length = 463

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/306 (20%), Positives = 115/306 (37%), Gaps = 20/306 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76
             + +L A SGG+DS+ LL  L  +   R+ G         +H +R  +++ +   V+  
Sbjct: 17  PNSSVLCACSGGTDSLALLDVLMRL---RAEGGPHVMCAHYEHGIRGGSSRADADAVAAY 73

Query: 77  CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C+   I   +    V +     +  +  AAR  RY  +           I  AH  DD  
Sbjct: 74  CAEHHIPCVIEAGDVPYYARAHKCSIETAARVCRYDFLHRVHIREQCDGIALAHHADDLA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV MR  R     G+    + D +         RPFL   R +I  ++ + N+  C D 
Sbjct: 134 ETVLMRILRGTGPAGLAAMRVWDGVH-------LRPFLFTARAEIEVYIREHNLRPCHDV 186

Query: 193 SNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           +N     +R R+R      +R     A+   + +   L  + ++ +A L  + L   +  
Sbjct: 187 TNDQQDIQRNRIRHALLPELRTYGNPAVDDALVRLSILSAEEDDYLAQLAAEELRRAVCR 246

Query: 249 IIAISQDILNIDSTLLFYLLRV-SAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
               +  +  +   +   +LR+  A+    Q          R +L  +   +  +  G  
Sbjct: 247 DGLSAAAVRALHPAMQRRVLRLFWASTTKEQDFSYHQEERMRALLASRGTAQCSLPHGWT 306

Query: 308 VIDRRA 313
            + R  
Sbjct: 307 AVLRYD 312


>gi|330817518|ref|YP_004361223.1| tRNA-Ile-lysidine synthetase [Burkholderia gladioli BSR3]
 gi|327369911|gb|AEA61267.1| tRNA-Ile-lysidine synthetase [Burkholderia gladioli BSR3]
          Length = 477

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 126/326 (38%), Gaps = 26/326 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++VR  +  L   A I +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVRVALGELPEHATIAIAYSGGLDSSVLLEA-----AARVAGAERCVALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +     + L +   V   +  +    G+ A+ARE RY  +    +   A  +  
Sbjct: 69  ADAWLAHAEAAAAALGVRFDVERVEVPRGTGLGVEASAREVRYRALDAMGERHGAQALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+        +  + ++   RP L   R  +  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGIAAMA-PRYLPAEASMVRVRPLLHLLRAQLERYAEAR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            + W +D SN D R+ R  +R  V    L AL +    F+D   +     A        +
Sbjct: 188 RLRWIDDESNADTRYTRNALRIEV----LPALSVHFPGFRDALARTAQHAAAAQRLLDAL 243

Query: 245 HMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
               +  I++D         +L +D      LLR      G    LPG  S  R+   +K
Sbjct: 244 AAGDLAEIARDEGRALSRERLLALDDERGANLLRHWMRTLG----LPG-ASAARLAEMIK 298

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRA 321
             +   VS   + ID     L + R 
Sbjct: 299 QLRATQVS-HALRIDHAGQCLRLYRE 323


>gi|326565650|gb|EGE15813.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 12P80B1]
 gi|326572293|gb|EGE22288.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC8]
          Length = 457

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 115/310 (37%), Gaps = 28/310 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M    + S+      L  PAH  + +A SGG DS+ L  A   +       ++  + + V
Sbjct: 7   MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 65

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            H  +      ++ V            ++    +K        AR+ARY           
Sbjct: 66  HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 120

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173
             ++M AH  +DQ ETV MR       +G+    +        +     + + RP+L+  
Sbjct: 121 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 180

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRV- 228
           R  I  F     + + +D +NTD  + R R+R+ +      ++  A+   ++    L + 
Sbjct: 181 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIIRSAGLLSMA 240

Query: 229 ------KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
                 +V   +A L      +  + ++ I  D LN+  +    +L           +LP
Sbjct: 241 STMVGQQVGTLLASLDHPANQMPYQQVLGIK-DFLNLSKSEQALVLHRWLQA---DEALP 296

Query: 283 GYRSMERVML 292
               + + ++
Sbjct: 297 PSHQLTQQVI 306


>gi|307546377|ref|YP_003898856.1| cell cycle protein [Halomonas elongata DSM 2581]
 gi|307218401|emb|CBV43671.1| cell cycle protein [Halomonas elongata DSM 2581]
          Length = 426

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/331 (20%), Positives = 115/331 (34%), Gaps = 20/331 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                + VA+SGG DS  LL                  A+ + H L+  A D  R+  ++
Sbjct: 20  PPGRAVWVALSGGLDSSLLLTLAVEASRRHPRP---LRALHIHHGLQAAADDFERHCREL 76

Query: 77  CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C RL ++  V           GL  AAR ARYA      +      +  A   DDQ ET 
Sbjct: 77  CERLGVSLCVERVDVDVSGGQGLEGAARHARYAAFRRCLEA--GDTLWLAQHRDDQAETF 134

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            + + R    +G+    +           ++RP+L   R  + +   +R ++W EDPSN 
Sbjct: 135 LLAALRGAGPRGLAAMPVERGQ---AGFRLARPWLGVSRAALEAEAARRGLTWVEDPSNA 191

Query: 196 DDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +   +R  +R  V              + +  +L  + +  +     + L         +
Sbjct: 192 ETVQDRNFLRHRVMPALQARWPGAGAALARSAELAGEADGLLDEFAAEDLERLGGDPGRL 251

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGRVVID 310
             D L + S     LL        G  S P  R ++ ++  L  +      +        
Sbjct: 252 VVDSLMVMSAARRRLLIRHCLSRLGLSSPPARR-LDSLLGQLEARHDAEVRIVWEGAEAR 310

Query: 311 RRANFLWITRAVRNLPTLILYPEETTVWDGR 341
                L++         + L P     WDGR
Sbjct: 311 VWRKALYLM-----ATPVPLPPAWRAEWDGR 336


>gi|326567127|gb|EGE17249.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC1]
          Length = 451

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 115/310 (37%), Gaps = 28/310 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M    + S+      L  PAH  + +A SGG DS+ L  A   +       ++  + + V
Sbjct: 1   MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            H  +      ++ V            ++    +K        AR+ARY           
Sbjct: 60  HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173
             ++M AH  +DQ ETV MR       +G+    +        +     + + RP+L+  
Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 174

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRV- 228
           R  I  F     + + +D +NTD  + R R+R+ +      ++  A+   ++    L + 
Sbjct: 175 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIIRSAGLLSMA 234

Query: 229 ------KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
                 +V   +A L      +  + ++ I  D LN+  +    +L           +LP
Sbjct: 235 STMVGQQVGTLLASLDHPANQMPYQQVLGIK-DFLNLSKSEQALVLHRWLQA---DEALP 290

Query: 283 GYRSMERVML 292
               + + ++
Sbjct: 291 PSHQLTQQVI 300


>gi|237739225|ref|ZP_04569706.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 2_1_31]
 gi|229422833|gb|EEO37880.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 2_1_31]
          Length = 452

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/311 (22%), Positives = 117/311 (37%), Gaps = 30/311 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +     F K K   + ++H LR E A  +  +  D   R 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKLQ---DFFKFKIYLVHINHLLRGEDADADESFSYDYAKRN 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V    V     K    L    RE RY   SE    + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFVKRIPVKEIAKKTGKTLEEVGREERYNFFSEIYDKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R     G  L G+    L   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLVR-----GTSLQGLEGIKLKYNN--IIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK--FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           + F R  +R  +         +K K   F  +     N     +     V   + + + +
Sbjct: 193 NEFTRNSIRLDLIPFIEKRYNIKFKDKLFSLIEEIRENNKKNFLDLDEYVDEENRLTLEK 252

Query: 255 ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG-RVVI 309
                +    + L+ +L + +  I            ++ +   +KS     + +     I
Sbjct: 253 IKTLSLFERKNLLVHFLNKKNIKI--------NRNKIDEINSLIKSDGTKKIDLDLNFRI 304

Query: 310 DRRANFLWITR 320
            +  + L+I +
Sbjct: 305 VKDYHHLYIEK 315


>gi|315185670|gb|EFU19438.1| tRNA(Ile)-lysidine synthetase [Spirochaeta thermophila DSM 6578]
          Length = 472

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 99/260 (38%), Gaps = 25/260 (9%)

Query: 6   IESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +E V  F +    V  A +LVA SGG DS  LL +L  +   R    +    + +DH +R
Sbjct: 2   LEKVYTFFKGFDHVEGAVVLVACSGGPDSTALLHSLFLL---RQRLNLTLKVVYLDHGIR 58

Query: 64  E--TAKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHA 114
                  E R+V  +     +   +          +    +  +   ARE RYA   E  
Sbjct: 59  PRSERDQEYRFVMSLAETRDLPSHIKRLPEGWILHRAKASKKSVEEVAREERYAFFEELL 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +   HT DDQ+ETV  R  R      + L GM             RP L C R
Sbjct: 119 SKGEGDYVALGHTRDDQVETVVFRFLRGSDP--LALRGMSPVR-----DRYLRPLLSCSR 171

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            ++ SFL ++ +S+ ED SN  D ++R  +R  V    L  L  +   +    V ++   
Sbjct: 172 SEVLSFLQEQGLSYLEDSSNEKDSYDRNFLRIHV----LPLLEKRFPGWTKAVVALSEKA 227

Query: 235 AMLIPKYLTVHMRSIIAISQ 254
            +             I I +
Sbjct: 228 ELYHRYLERRVPVGEIPIEE 247


>gi|320451012|ref|YP_004203108.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
 gi|320151181|gb|ADW22559.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01]
          Length = 514

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 126/317 (39%), Gaps = 30/317 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+ +  +  L     +++AVSGG DS+ L   +     +            +DH LR  +
Sbjct: 11  EAFQKRLARLAPRGPLVLAVSGGGDSVALAHLVKRAGREG-------VVAHLDHALRPES 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLI 122
             ++ +V  +  RL         + ++     +  L A ARE RYA +   A+ + A  I
Sbjct: 64  GGDLLFVKALAERLGYPFYAERVEVARVAREWRENLEAVAREIRYAFLHRVAREVKAKAI 123

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAHT DDQ ETV ++  +  A +G+G+         +    + RP L  RRE++R++L 
Sbjct: 124 LTAHTLDDQAETVLLKLLQGTA-RGLGI--------REKEGLVVRPLLAFRREELRAYLK 174

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIP 239
               +W EDPSN D   +R  +R  V  +           + +F  +R++    +     
Sbjct: 175 ALGEAWREDPSNQDLSRDRNYLRLKVLPLVEERFPGAKEALSRFAQVRMEEEAHLEREAR 234

Query: 240 KYLTVHMRSIIAI--SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
             L    R  +    +  +L     L    LR    I       P    +  ++     G
Sbjct: 235 ARLLPDPRFFVPAYRAAPLLEAPGVLRRRALR---WILEALDLRP-EARLIALLEEALGG 290

Query: 298 KRGCVSIGRVVIDRRAN 314
           K   +  G     R+  
Sbjct: 291 KVATLP-GGYTARRKGG 306


>gi|269302798|gb|ACZ32898.1| tRNA(Ile)-lysidine synthetase [Chlamydophila pneumoniae LPCoLN]
          Length = 319

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 21/263 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  F  SL      L+A+SGGSDS+ L   L           + F+A+ +DH  R T+
Sbjct: 12  KQLDLFFASLDVKKRYLLALSGGSDSLFLFYLLKE-------RGVSFTAVHIDHGWRSTS 64

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTA 125
             E + + ++C+R  +   + +    +     L   AR+ RYA + E  + ++A  I  A
Sbjct: 65  AQEAKELEELCAREGVPFVLYTLTAEEQGDKDLENQARKKRYAFLYESYRQLDAGGIFLA 124

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +DQ ETV  R           L  M +   Y  ++ + RP L   +  ++  L  R 
Sbjct: 125 HHANDQAETVLKRLLESAHL--TNLKAMAE-RSYVEDVLLLRPLLHIPKSSLKEALDARG 181

Query: 186 ISWCEDPSNTDDRFERVRVRRFV---------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           IS+ +DPSN D+R+ R R+R+ +         ++I    L L  ++  +L   +      
Sbjct: 182 ISYVQDPSNEDERYLRARMRKKLFPWLEEVFGKNITFPLLTLG-EESAELSEYLEKQAQP 240

Query: 237 LIPKYLTVHMRSIIAISQDILNI 259
                     +  +     ++  
Sbjct: 241 FFSAATHQDSQGELPCPDCLIQQ 263


>gi|148258083|ref|YP_001242668.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1]
 gi|189035964|sp|A5ERG8|TILS_BRASB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|146410256|gb|ABQ38762.1| tRNA(Ile)-lysidine synthase [Bradyrhizobium sp. BTAi1]
          Length = 358

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/345 (23%), Positives = 145/345 (42%), Gaps = 32/345 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           +S  E+ R F  +    + +L +AVSGG DSM L+       + R+ G  +  A++VDH 
Sbjct: 12  ISAAEAERLF--APFADSGVLTLAVSGGPDSMALMWLAARWRATRA-GGPRLLAVTVDHG 68

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  ++ E   V  +  +L + H  + W   KP  G+  AAR ARY L++  A+   A+ 
Sbjct: 69  LRPESRREALMVKQLARQLGLTHRTLRWSGEKPAAGIPEAARIARYRLLARAAEQAGASH 128

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++TAHT DDQ ETV MR  R     G+        +     L ++RP L   +  + + L
Sbjct: 129 VVTAHTRDDQAETVLMRLLRGSGIAGLAAM---APVSRRDGLLLARPLLSLSKARLLATL 185

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAML 237
               I++ +DP+N D  F R R+R  +  +            +             +A  
Sbjct: 186 RSAGIAFADDPTNRDPAFTRPRLRALMPTLAAEGADPRTLATLANRARRANAAIELMADG 245

Query: 238 IPKYLTVHMR----------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS- 286
             +YL +               +   +    + + +   LL  +    G +  +   ++ 
Sbjct: 246 AERYLALLAAGRSSKRRGGEGEMFDPRAFAALPAEIRLRLLMRAIDRVGTEGPVELGKAE 305

Query: 287 --MERVMLFLK------SGKRGCV--SIGRVVIDRRANFLWITRA 321
             +ER+   L       + +RG +  ++   ++    + + I+ A
Sbjct: 306 ALLERLDRTLAGITDGGTAERGTLKQTLAGALVSLAKDAIRISPA 350


>gi|298528449|ref|ZP_07015853.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512101|gb|EFI36003.1| tRNA(Ile)-lysidine synthetase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 344

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 119/307 (38%), Gaps = 19/307 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +L   SGG DS  L++A+H +    +    K  A  +DH LR  A +++  V D 
Sbjct: 32  LKGKKVLAGFSGGPDSAALVLAMHYLAPSLNM---KLEAAYLDHGLRREAGEDLALVQDT 88

Query: 77  CS----RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           CS    +L +  S VS    + + G+   AR  RY  +   A+   A  ++T H  +D  
Sbjct: 89  CSQLSMKLHLGRSNVSRLAGRGRGGIEETARRLRYRYLHGVARKTGADYVLTGHHLNDLA 148

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E + MR QR     G G  G+     Y     I RP L   R+ I  FL      +  D 
Sbjct: 149 EDILMRLQR-----GTGWPGLSGMRAYVPERRILRPLLMIPRKCIMDFLETAGQGYVLDA 203

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL---TVHMRSI 249
           +N D  F R RVR  +   +  A+     K      ++    A      L      ++  
Sbjct: 204 TNKDKTFLRNRVRMSLVP-EFEAINPGFLKSIANIWRLGRVDADYWDHILEEARQDVQEE 262

Query: 250 IAISQDILN-IDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSI-GR 306
             +  D+L+ +       L + +    G GQ  +     ++ +    K+G R        
Sbjct: 263 DLVPGDLLSGMHQAARMRLYKKTLDSLGPGQALVENIFKLDELWQSRKTGARVQFPGDKE 322

Query: 307 VVIDRRA 313
            +I R  
Sbjct: 323 ALISREG 329


>gi|15639364|ref|NP_218813.1| hypothetical protein TP0373 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025606|ref|YP_001933378.1| hypothetical protein TPASS_0373 [Treponema pallidum subsp. pallidum
           SS14]
 gi|6136519|sp|O83388|TILS_TREPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226695552|sp|B2S2X0|TILS_TREPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3322651|gb|AAC65358.1| conserved hypothetical protein [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189018181|gb|ACD70799.1| hypothetical protein TPASS_0373 [Treponema pallidum subsp. pallidum
           SS14]
          Length = 477

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/340 (23%), Positives = 129/340 (37%), Gaps = 40/340 (11%)

Query: 6   IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +   R F   LV   P+ +LVAVSGG+DS+ LL A H +  D     +   A++VDH LR
Sbjct: 13  VHVARSFGHFLVPRKPSCLLVAVSGGADSLALLYAAHELAPD---FGVCACAVTVDHSLR 69

Query: 64  ETA-KDEVRYVSDVCSRLR--IAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113
                 + R+V  +C+R    +   V       V         G+  AAR  RY +    
Sbjct: 70  AQEGALDARFVRALCARFSPPLPCFVQQISAGAVHACAKIRGRGVQDAARALRYKVFDHV 129

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A    A +++TAHT DDQ ET+ MR  +  A   +         +        RP L+  
Sbjct: 130 AARCGAQVVLTAHTRDDQYETLLMRLFQGAAASAL-------QGIRAARGRYVRPLLKVS 182

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           R  +  FL  R + W ED SNT  ++ R R+R  +       L             ++  
Sbjct: 183 RTCVEDFLQTRGVRWREDASNTCRKYVRNRIRHELIPALDAVLAGWRSGLDKTFAGISAE 242

Query: 234 VAMLIPKYLTVHMRSIIAISQ--------------DILNIDSTLLFYLLRVSAAICGGQI 279
            +  +            A                 D L  +  L F+LL+ +    G   
Sbjct: 243 HSFCVAALTRWREGCSHAWEPVPRALGTRLRMPRSDFLAAEFILRFFLLQEACVRLGVSH 302

Query: 280 SLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319
            +P    +ER   F        + +  + ++R   ++  +
Sbjct: 303 RVPRGA-LERCARF---DGVRRIHVSGLQLERAGAYVLFS 338


>gi|300691851|ref|YP_003752846.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum PSI07]
 gi|299078911|emb|CBJ51572.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum PSI07]
          Length = 474

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 132/340 (38%), Gaps = 14/340 (4%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +   FV S   P  + VA+SGG DS   L+   +   D +   ++  A+ V H L+  
Sbjct: 24  VAACAAFVVSGGAPT-VAVALSGGRDSAA-LLHAAAAWRDVAGAPVRLVALHVHHGLQAD 81

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A       + + + +     V   + S     G+  AAREARYA +        ATL++T
Sbjct: 82  ADAWEVACARMAAAVGAEFHVRRVRVSADAGRGIEEAAREARYAALDALCAEAGATLLLT 141

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ ETV ++  R     G+    M         + + RP+L   R DI ++    
Sbjct: 142 AHHLDDQAETVLLQLLRGAGLDGLSAMPMA----RQRRVTLLRPWLDVPRSDIDAYARAH 197

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            ++W EDPSN D R+ R  +R  +  +  H  A    + +      +    +  +    L
Sbjct: 198 ALAWVEDPSNDDARYARNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIEEVAQADL 257

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV---MLFLKSGKR 299
                +      D+  +       +LR   A  G  +     R +E +   +L  ++   
Sbjct: 258 ARIAPAGALALADLATLSGPRQRAVLRAWLAGAG--LRAASSRRLEDLRTQLLSARADGA 315

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWD 339
            CV +    + R     WI  A +        P     +D
Sbjct: 316 LCVRLSGAHVRRYRGQAWIEVAGQPEAGPAACPIAVAQFD 355


>gi|169824693|ref|YP_001692304.1| cell cycle protein [Finegoldia magna ATCC 29328]
 gi|167831498|dbj|BAG08414.1| cell cycle protein [Finegoldia magna ATCC 29328]
          Length = 451

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 99/272 (36%), Gaps = 22/272 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               IL+ +SGG+DS+ LL  L  +  D  F   +     ++H  R+TA  +  +   + 
Sbjct: 19  KHDKILIGLSGGADSVFLLNILIKLQRDLDF---EIYTCHINHSYRDTALRDENFSRKIS 75

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I          +        L  + R  RY   +E  K+ +   I  AH  DDQ+E
Sbjct: 76  EENNIKFFSKKVDMKQYSIDNSISLEDSGRILRYKYFNEILKSEDFNKIAVAHHLDDQVE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T ++   R     G  L G+        N  I RP L   + +I ++L + +I +  D +
Sbjct: 136 TFFLHLFRGSGIDG--LCGIQ-----YQNKNIIRPLLDVSKSEILNYLDENDIDYVTDET 188

Query: 194 NTDDRFERVRVRRFVRDIDL--------HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           N     +R ++R  +              ++Y  +   +D +  +++       K +   
Sbjct: 189 NFVADVQRNKIRLEMLPYIQDNFNSSISDSIYRTINILKDSKEIIDDVTNFKYKKLVNQE 248

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277
                      +    ++   ++R       G
Sbjct: 249 NGEYFIDVNLFVREKKSVRRNIIRKLLIELNG 280


>gi|285019212|ref|YP_003376923.1| cell cycle protein [Xanthomonas albilineans GPE PC73]
 gi|283474430|emb|CBA16931.1| putative cell cycle protein [Xanthomonas albilineans]
          Length = 445

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 125/357 (35%), Gaps = 22/357 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             PA +L+  SGG DS  LL AL      R  G     A+ V H L   A     +   +
Sbjct: 20  PAPAPVLLGFSGGLDSTVLLHALAQQPHYRQRG---LRAVHVHHGLHPDADAWAMHCQQM 76

Query: 77  CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
              L +   V+  +  + +  GL AAAR+AR A  ++     +   +  A   DDQ ET 
Sbjct: 77  SVALAVPLQVLRVQVPRDRGDGLEAAARQARRAAFAQVLA--HGEWLALAQHRDDQAETF 134

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +R+ R     G+        +    +  + RP L   R  + ++  Q  + W +DPSN 
Sbjct: 135 LLRALRASGPDGLAAM---QPLSGFADGKLWRPLLTLPRSALHAYAQQHALRWIDDPSNA 191

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI------ 249
           D  F+R  + R      L   +           ++    A L+       + +       
Sbjct: 192 DPGFDRNFL-RLRVLPLLRQRWPHADAALARSAQLCAEAATLLDADDQATLNAWQYAPGT 250

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
                 +  + S     +LR   +  G   +   G  ++ER +L+ ++      +     
Sbjct: 251 ALPLPPLRALPSARRARVLRRWISDAGLPPLPAAGLAAIERTLLYPRADAAAEFAWHGAH 310

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
           +      L+               +  T WDG    +      +++   +    D P
Sbjct: 311 VRSWREALY-----AECDPPSWPADWQTHWDGCAPLRLPDGRQLRLQATTPLGFDTP 362


>gi|121593999|ref|YP_985895.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42]
 gi|120606079|gb|ABM41819.1| tRNA(Ile)-lysidine synthetase [Acidovorax sp. JS42]
          Length = 335

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 122/330 (36%), Gaps = 33/330 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S   +V  F   L     + VA+SGG+DS  LL+A  +          +  A  V H
Sbjct: 1   MTQSFDAAVAAFRPRLP----LAVALSGGADSTALLLACAARWPG------QVVAFHVHH 50

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119
            L+  A    ++   +C RL I   V               AAR+ARY      A    A
Sbjct: 51  GLQAAADGFEQHCVALCERLGIPLWVRRVDARHAAGQSPEDAARQARYKAFEALALDCQA 110

Query: 120 TL----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 I  A   DDQ+ET+ +   R     G+              +   RP LR    
Sbjct: 111 QAAIKTIALAQHADDQVETLLLALSRGAGVAGLAAM---PAQWQRAGMDWCRPLLRVAGA 167

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           D+R++L+ R   W EDP+N D+RF R R+RR +    L AL     +F+D   +     A
Sbjct: 168 DVRAWLVARGERWVEDPTNADERFTRNRIRRQL----LPALQQAFPQFRDTFARSCEHAA 223

Query: 236 MLIPKYLTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                   +      AI Q      +  +       +LR    +     + P    +  +
Sbjct: 224 QASELLQELAAADAAAIGQPPRIAALRALGRARQANVLRHWLRV--HHATTPTAAQLNEL 281

Query: 291 MLFLKS----GKRGCVSIGRVVIDRRANFL 316
           +  L +    G R  + +G   + R A  L
Sbjct: 282 LDQLAACATRGHRIHLKVGGGYVVREAEVL 311


>gi|296328516|ref|ZP_06871035.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154325|gb|EFG95124.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 448

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +     F   K   + ++H LR E A  +  +  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKLQY---FFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +    V     +    L    RE RY   SE  + + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYEKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R  + +G+         +   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIRGTSLQGL-------EGIKIKNNNIIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NEFTRNSIRLNLIPFIEERYNIKFK 217


>gi|19705273|ref|NP_602768.1| cell cycle protein MesJ [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|61216676|sp|Q8RHN5|TILS_FUSNN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|19713236|gb|AAL94067.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 448

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +     F   K   + ++H LR E A  +  +  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKLQY---FFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +    V     +    L    RE RY   SE  + + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYEKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R  + +G+         +   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIRGTSLQGL-------EGIKIKNNNIIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NEFTRNSIRLNLIPFIEERYNIKFK 217


>gi|51246784|ref|YP_066668.1| cell cycle protein MesJ [Desulfotalea psychrophila LSv54]
 gi|61216493|sp|Q6AJ19|TILS_DESPS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50877821|emb|CAG37661.1| related to cell cycle protein MesJ [Desulfotalea psychrophila
           LSv54]
          Length = 471

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 121/325 (37%), Gaps = 36/325 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVS 74
           L     I+V VSGG+DS+ LL  L  +  D     ++  AI +DH LR      E+ +V 
Sbjct: 25  LKSGDKIIVGVSGGADSIALLHILTELNLD-----LQLIAIYIDHGLRPDEIPQEISFVK 79

Query: 75  DVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                +      +S          +     AAR  RY   +E  +   A  IM AH  DD
Sbjct: 80  GQAGAVGAEFESISVDVLALKNCDKLSTEDAARRLRYQAFAEARERYGAKYIMVAHNADD 139

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q+E  ++R  R    +G  LSGM        N  + RP L   + D+  +L +R I  CE
Sbjct: 140 QVEEFFIRLLRGSGRRG--LSGMP-----YQNGLLLRPLLSLTKADLLLYLQERGIDHCE 192

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN +  + R R+R  +    L      +++       +  +    + K          
Sbjct: 193 DSSNREPCYLRNRIRLDLLPR-LEEYNPSLRRTILNTSSILESEEDFLEKSARELFNRST 251

Query: 251 AISQDILNIDSTLLFYLL---------RVSAAICGGQISLPGYRSMERVMLFLKSGKRG- 300
            I+++     + L              RV   IC    + P +  +E +      G    
Sbjct: 252 RINREGKLPKTELDCRSFSGGHQALQRRVIELICWQMDAQPSFTHIENICRLATEGTSAK 311

Query: 301 CVSIGRVVIDRRANFLWITRAVRNL 325
            + +G        + L + + +  +
Sbjct: 312 TLQLG--------SGLRVKKEISQV 328


>gi|326562167|gb|EGE12495.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 7169]
          Length = 451

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 111/309 (35%), Gaps = 26/309 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M    + S+      L  PAH  + +A SGG DS+ L  A   +       ++  + + V
Sbjct: 1   MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            H  +      ++ V            ++    +K        AR+ARY           
Sbjct: 60  HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173
             ++M AH  +DQ ETV MR       +G+    +        +     + + RP+L+  
Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIL 174

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           R+ I  F     + + +D +NTD  + R R+R+ +    L      ++        ++ A
Sbjct: 175 RDKISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLALNPKAIENIVRSAGLLSMA 234

Query: 234 VAMLIPKYLTVHMRSIIAISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPG 283
             M+  +  T+        +Q          D LN+  +    +L           +LP 
Sbjct: 235 STMVDQQVGTLLASLDYPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291

Query: 284 YRSMERVML 292
              + + ++
Sbjct: 292 SHQLTQQVI 300


>gi|326566220|gb|EGE16372.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis 103P14B1]
          Length = 451

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 115/310 (37%), Gaps = 28/310 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M    + S+      L  PAH  + +A SGG DS+ L  A   +       ++  + + V
Sbjct: 1   MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            H  +      ++ V            ++    +K        AR+ARY           
Sbjct: 60  HHGWQAANDAWMQLVHCWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173
             ++M AH  +DQ ETV MR       +G+    +        +     + + RP+L+  
Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIS 174

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRV- 228
           R  I  F     + + +D +NTD  + R R+R+ +      ++  A+   ++    L + 
Sbjct: 175 RNQISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLTLNPKAVENIIRSAGLLSMA 234

Query: 229 ------KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
                 +V   +A L      +  + ++ I  D LN+  +    +L           +LP
Sbjct: 235 STMVGQQVGTLLASLDHPANQMPYQQVLGIK-DFLNLSKSEQALVLHRWLQA---DEALP 290

Query: 283 GYRSMERVML 292
               + + ++
Sbjct: 291 PSHQLTQQVI 300


>gi|291515519|emb|CBK64729.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Alistipes shahii WAL
           8301]
          Length = 447

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 29/254 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
           +   IL+ VSGG DSM +L               +      +  LR   + ++   V D 
Sbjct: 19  HDDRILLTVSGGVDSMVMLSLFTRC-------GYRVGVAHCNFQLRGAESDEDEVLVEDE 71

Query: 77  CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +   A     ++      +    +  AAR  RYA     ++    T I  AH  DD +
Sbjct: 72  AKKHGAAFYNRRFETRAEMERTGESMEMAARRLRYAWFDALSREHGYTAIAIAHHADDSI 131

Query: 133 ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ET ++   R    +G+ G+S             + RP L   R++I  + +Q  I + ED
Sbjct: 132 ETFFINLLRGTGLRGLTGISTQVGK--------VIRPLLFASRKEILEYAVQNRIPFRED 183

Query: 192 PSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            SN   ++ R ++R       R +       +   + +  D ++ +N+ +  +  + +T 
Sbjct: 184 SSNRSTKYLRNKIRLGLIPRIREINPKFTSLMSRNLARLTDAQLFINHGIERIRSEAVTS 243

Query: 245 HMRSIIAISQDILN 258
               I  I  D L+
Sbjct: 244 DT-GIDTIHLDRLD 256


>gi|83748220|ref|ZP_00945246.1| tRNA(Ile)-lysidine synthetase TilS [Ralstonia solanacearum UW551]
 gi|83725061|gb|EAP72213.1| tRNA(Ile)-lysidine synthetase TilS [Ralstonia solanacearum UW551]
          Length = 475

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 127/327 (38%), Gaps = 12/327 (3%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +   FV S   P  + VA+SGG DS  LL A  +         ++  A+ V H L+  
Sbjct: 24  VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAAAAWRDAAGVP-VRLVALHVHHGLQVD 81

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A       + + + + +   V     S     G+  AAREARYA +        ATL++T
Sbjct: 82  ADAWEVACARMAAAVDVECHVRRVCVSVDAGRGIEEAAREARYAALDALCAETGATLLLT 141

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ ETV ++  R     G+    M         + + RP+L   R DI ++    
Sbjct: 142 AHHLDDQAETVLLQLLRGAGLDGLSAMPM----ERPGGVTLLRPWLDVPRSDIETYARTH 197

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            ++W +DPSN D R+ R  +R  +  +  H  A    + +      +    +  +    L
Sbjct: 198 ALAWVDDPSNHDARYARNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIDEIAQADL 257

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGC 301
                + +    D+  +       +LR   A  G +         +   +L  ++    C
Sbjct: 258 ARIAPAGMLALADLAALSGPRQRAVLRAWLAGAGLRAVASRRLEDLRAQLLTARTDGALC 317

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTL 328
           V +    + R     WI   V   P +
Sbjct: 318 VRLPGAQVRRYRAQAWI--EVAGQPEV 342


>gi|300088508|ref|YP_003759030.1| tRNA(Ile)-lysidine synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528241|gb|ADJ26709.1| tRNA(Ile)-lysidine synthetase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 479

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 136/373 (36%), Gaps = 38/373 (10%)

Query: 30  SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSV-- 86
           +DS+ LL  LH   S      I+F    ++H LR   A  +  +V  +  RL +  ++  
Sbjct: 36  ADSVCLLHILHKYQSALG---IEFHVAHLNHGLRGGDADADAEFVRALAERLGLEATIEK 92

Query: 87  --VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
             V+   ++    L  AARE RY  ++E A       +  AHT +D +ETV +   R   
Sbjct: 93  RDVAGYRARHGLTLEEAAREVRYRFLAETA---GGDTVAVAHTRNDHVETVMLHLLRGTG 149

Query: 145 EKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
             G+       T+ +    +L I RP +   R ++ ++     + + +D +N      R 
Sbjct: 150 LSGLVGLKEASTLSHKRITSLKIIRPLICLTRAEVEAYCRASGLEYRDDATNESLTPTRN 209

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNN--------AVAMLIPKYLTVHMRSIIAISQ 254
           R+R  +          ++ +  +   ++            A      +       +    
Sbjct: 210 RIRLQLLPEIRREYNPRVDEALERLSRLAGDDADFIEIRAAEAADLVVRTEGELTVIDRA 269

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-GRVVIDRRA 313
            +  +   L   +LR + A   G         +E ++     G    + +   +V     
Sbjct: 270 GLAGLHPALRRAVLRAALAGALGSAKDIEAGHVEDMLDIATGGAGRMIDLPQGLVFRAGY 329

Query: 314 NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIA 373
              ++ +   +L      P  + V +GRY+     ++L+      +R          ++ 
Sbjct: 330 GQAYLGKVSASL------PGTSPVIEGRYRLTVPGETLLP----GWRVIA------ELLP 373

Query: 374 QRALSSMPSKEGG 386
           + A+   PS + G
Sbjct: 374 RSAVGEFPSTDDG 386


>gi|307718728|ref|YP_003874260.1| tRNA(Ile)-lysidine synthase [Spirochaeta thermophila DSM 6192]
 gi|306532453|gb|ADN01987.1| tRNA(Ile)-lysidine synthase [Spirochaeta thermophila DSM 6192]
          Length = 472

 Score =  180 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 96/242 (39%), Gaps = 25/242 (10%)

Query: 6   IESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +E V  F +    V  A +LVA SGG DS  LL +L  +   R    +    + +DH +R
Sbjct: 2   LEKVYTFFKGFDHVEGAVVLVACSGGPDSTALLHSLFLL---RQRLNLTLKVVYLDHGIR 58

Query: 64  E--TAKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHA 114
                  E R+V  +     +   +          +    +  +   ARE RYA   E  
Sbjct: 59  PRSERDQEYRFVMSLAETRDLPSHIKRLPEGWILHRAKASKKSVEEVAREERYAFFEELL 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +   HT DDQ+ETV  R  R      + L GM             RP L C R
Sbjct: 119 SKGEGDYVALGHTRDDQVETVVFRFLRGSDP--LALRGMSPVR-----DRYLRPLLSCSR 171

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            ++ SFL ++ +S+ ED SN  D ++R  +R  V    L  L  +   +    V ++   
Sbjct: 172 SEVLSFLQEQGLSYLEDSSNEKDAYDRNFLRIHV----LPVLEKRFPGWTKAVVALSEKA 227

Query: 235 AM 236
            +
Sbjct: 228 EL 229


>gi|167894984|ref|ZP_02482386.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 7894]
 gi|167919622|ref|ZP_02506713.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei BCC215]
          Length = 492

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 113/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNT+ R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTNTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+ D+ +         LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|126439105|ref|YP_001059568.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 668]
 gi|126218598|gb|ABN82104.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 668]
          Length = 489

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 113/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNT+ R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTNTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+ D+ +         LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|113476777|ref|YP_722838.1| tRNA(Ile)-lysidine synthetase [Trichodesmium erythraeum IMS101]
 gi|110167825|gb|ABG52365.1| tRNA(Ile)-lysidine synthetase [Trichodesmium erythraeum IMS101]
          Length = 344

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 106/286 (37%), Gaps = 21/286 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     IL+AVSGG DS+        +L  +S      +    DH  R  ++    YV
Sbjct: 26  KLLPKNQRILIAVSGGQDSL---CLTKLLLDLQSKWGWYLAVAHCDHKWRSDSEANANYV 82

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +    ++   V +           A AR+ RY ++S+ A   N   I+T HT  D+ E
Sbjct: 83  KKIAINWQLPSYVETADKIYKS---EAEARKWRYQVLSKIALEFNFQYIVTGHTASDRAE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+     R    +G+        ++ +    + RP L   R    +F  ++ I   ED +
Sbjct: 140 TLLYNLIRGSGTEGLQALTWQRPLIENFLPLLVRPLLEITRTQTSNFCQEQKIRIWEDST 199

Query: 194 NTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           N D  + R R+R  +  I          AL    +          N    L+ +   +  
Sbjct: 200 NQDLHYARNRIRLELFPILRQFNPQVELALAKTAEILSAEVKYFENETEQLLERVTKIDT 259

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            +      ++   +S  + Y +     +   Q+ L   R + R +L
Sbjct: 260 NNF-----NLSQFESQPVKYFINRLVLL---QVPLALQRRVMRHIL 297


>gi|284036229|ref|YP_003386159.1| tRNA(Ile)-lysidine synthetase [Spirosoma linguale DSM 74]
 gi|283815522|gb|ADB37360.1| tRNA(Ile)-lysidine synthetase [Spirosoma linguale DSM 74]
          Length = 446

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 115/318 (36%), Gaps = 34/318 (10%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
            L  P   +L+AVSGG DSM +    +            FS   V+  +R   +  +  +
Sbjct: 14  QLFKPTDRVLLAVSGGIDSMVMAELFYR-------SGQPFSIAHVNFSMRGAASGADAVF 66

Query: 73  VSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V +  +   +    + +       +    +  AARE RYA  S+     + T + TAH  
Sbjct: 67  VENKANGYGVPFHSIRFDTKAVAYERGISIQMAARELRYAWFSQLLSEFSYTCLATAHHK 126

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D LET+ +   R     G+         +      + RP L   R+ + ++ +  ++ +
Sbjct: 127 NDVLETLLLNLTRGTGLAGLH-------GILANQNQVVRPLLFATRDQVVAYAIANSLEY 179

Query: 189 CEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            ED SN D ++ R R+R  V  +           L   +++ +     +   +     + 
Sbjct: 180 REDSSNADVKYARNRIRHHVVPVLAELNPGLWQTLPRTVERLRAAETLMRAELDRSWQEV 239

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             V  RSI+ +  D L   S LLF L    A             S+  ++  L       
Sbjct: 240 AEVGGRSIL-LPHDKLLAQSELLFRL----AEWVKPFGFTSDQASL--LVACLTQPVGQI 292

Query: 302 VSIGRVVIDRRANFLWIT 319
                  I    N L I 
Sbjct: 293 FRSATHRITHERNGLLIE 310


>gi|260221174|emb|CBA29474.1| tRNA(Ile)-lysidine synthase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 326

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 124/332 (37%), Gaps = 33/332 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S  +++R F  +L     + VA SGG+DS  LL+A             +  AI V+H
Sbjct: 1   MTQSFDQAMRAFEPALP----LGVAYSGGADSSALLVACARQWPG------QVVAIHVNH 50

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINA 119
            L+  A D   +   VCSRL I   V +      P      AAR ARY      A+   A
Sbjct: 51  GLQAAAADFEAHCRSVCSRLGIPLHVEAVHAHAVPGQSPEDAARIARYKAFDALAQMECA 110

Query: 120 TL----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I  A   DDQ+ET+ +   R       GLSGM         +   RP L+   +
Sbjct: 111 GVAIKSIAIAQHADDQVETMLLALGRGAGL--AGLSGMPA-QWQRGKVHFFRPLLQVAGD 167

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            ++ +L+  N  W  DP+N D R+ R  +R  +    L AL     +F +   +     A
Sbjct: 168 ALKRWLVANNEPWVSDPTNADHRYTRNHIRSEL----LPALQRVFPQFLETFARSARHAA 223

Query: 236 MLIPKYLTVHMRSIIAISQDIL---------NIDSTLLFYLLRVSAAICGGQISLPGY-- 284
                   +      A+ ++            +       +LR    +  G I       
Sbjct: 224 EAEALLAEMADEDWRAVEREAPGRPNIRSLQALSPARQSNVLRRWLKLGHGVIPQASQLL 283

Query: 285 RSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
              ++V      G R  + +G   + RR   L
Sbjct: 284 ELRKQVQACTTRGHRIHLKVGNGFVTRRGATL 315


>gi|207743488|ref|YP_002259880.1| hypothetical protein RSIPO_01666 [Ralstonia solanacearum IPO1609]
 gi|206594886|emb|CAQ61813.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 462

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 127/327 (38%), Gaps = 12/327 (3%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +   FV S   P  + VA+SGG DS  LL A  +         ++  A+ V H L+  
Sbjct: 11  VAACAAFVVSGGRPT-VAVALSGGRDSAALLHAAAAWRDAAGVP-VRLVALHVHHGLQVD 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A       + + + + +   V     S     G+  AAREARYA +        ATL++T
Sbjct: 69  ADAWEVACARMAAAVDVECHVRRVCVSVDAGRGIEEAAREARYAALDALCAETGATLLLT 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ ETV ++  R     G+    M         + + RP+L   R DI ++    
Sbjct: 129 AHHLDDQAETVLLQLLRGAGLDGLSAMPM----ERPGGVTLLRPWLDVPRSDIETYARTH 184

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            ++W +DPSN D R+ R  +R  +  +  H  A    + +      +    +  +    L
Sbjct: 185 ALAWVDDPSNHDARYARNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIDEIAQADL 244

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGC 301
                + +    D+  +       +LR   A  G +         +   +L  ++    C
Sbjct: 245 ARIAPAGMLALADLAALSGPRQRAVLRAWLAGAGLRAVASRRLEDLRAQLLTARTDGALC 304

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTL 328
           V +    + R     WI   V   P +
Sbjct: 305 VRLPGAQVRRYRAQAWI--EVAGQPEV 329


>gi|218290654|ref|ZP_03494745.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239319|gb|EED06517.1| tRNA(Ile)-lysidine synthetase [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 277

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 54/202 (26%), Positives = 81/202 (40%), Gaps = 3/202 (1%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           + FF +  +  AH ++ VSGG DSM LL        +       FS + V H LRETA  
Sbjct: 12  ISFFQQHRLETAHAVIGVSGGVDSMVLLHLCQRAAEEAPSALGGFSVVHVHHHLRETADR 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           +  +V   C    I   +   K    +   + AA                  +I+ AH  
Sbjct: 72  DAEFVEQYCREREIPCEIAHVKVVDERGEGLEAAARRARYQALAERARAKGGVILVAHHA 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D+LET  MR  R     G+G       +     + ++RP +   + +I  +     +  
Sbjct: 132 QDELETFIMRLLRGAGPGGLGAMRPEAEM---NGVRVARPLIAVEKGEIDRYAEAHGVPH 188

Query: 189 CEDPSNTDDRFERVRVRRFVRD 210
            ED +N D RF R RVR+ V  
Sbjct: 189 VEDETNEDPRFFRNRVRQVVIP 210


>gi|219849533|ref|YP_002463966.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aggregans DSM 9485]
 gi|219543792|gb|ACL25530.1| tRNA(Ile)-lysidine synthetase [Chloroflexus aggregans DSM 9485]
          Length = 474

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 140/377 (37%), Gaps = 58/377 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCS 78
           A +LVAVSGGSDS+   +           G +   A  +DH LR   +  +  +V+ + +
Sbjct: 19  ARLLVAVSGGSDSLA--LLHMLAALYAEGGPVPIVA-HLDHGLRGAESAADAAFVTSLAA 75

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              +   +         T   A AR  RY  ++  A       ++ AH  DDQ ETV M 
Sbjct: 76  EWGLRAVIEQAHLPPGTTS--ATARIVRYTFLARTAIAEGVDAVLVAHQADDQAETVLMH 133

Query: 139 SQRDYAEKGMGLSGMCDTILYDL--------------NLWISRPFLRCRREDIRSFLLQR 184
             R      +GL GM + +++                   + RP L  RR  +  +    
Sbjct: 134 LLRGAGP--VGLRGMRERVVWSEWAAPAIAAGVVPSSGPPLLRPLLTIRRTTLADYCKMH 191

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVK----VNNAVAML 237
            ++  +DP+N +  + R R+R  +      +   +Y  + +   +  +    +   +A+ 
Sbjct: 192 ALTPRDDPTNRNLHYLRARIRHQLLPQLATENPQIYAALNRTARICAEDYDYIQQMLAVQ 251

Query: 238 IPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
            PK +    R +IA  +  L  +   L  Y LR + A  G +   P    ++  +  LK 
Sbjct: 252 WPKLIAERRRGLIAFDRAALRVLHPALQRYALRRAVAELGAEE--PSLAQIDAALQMLKG 309

Query: 297 GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGP 356
                                  R +R  P L+L  ++ TV         L D+   + P
Sbjct: 310 QAG--------------------RQMRLTPQLVLTCDQLTV------TVALPDAEPPVAP 343

Query: 357 QSYRKADVPSGIPPIIA 373
           Q Y    +P+     + 
Sbjct: 344 QVYEPVSLPTSGKVSLP 360


>gi|111115622|ref|YP_710240.1| hypothetical protein BAPKO_0840 [Borrelia afzelii PKo]
 gi|123046902|sp|Q0SM64|TILS_BORAP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|110890896|gb|ABH02064.1| hypothetical protein BAPKO_0840 [Borrelia afzelii PKo]
          Length = 440

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 114/293 (38%), Gaps = 25/293 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R   +  
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIIAFYFAHFIRPDNEQN 67

Query: 69  -EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +      +  ++ +    +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQIKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+         +  +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGLA-------GIPSVNKNIIRPLLEVSRPEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NI    D +N+ + + R +VR  +            K  + +       V       
Sbjct: 181 SLNNIRVFIDSTNSQNLYLRNKVRNNLLPSIEKIFKGYEKCLKRISEFSKEFVNYFEKDE 240

Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
                +     S D+   L+    L+F L+        G ++   Y+++  + 
Sbjct: 241 FFPVEKGKYYYSFDLKAFLDFPKYLVFRLI-FKILNSEGIVAKISYKALNELF 292


>gi|303234983|ref|ZP_07321607.1| tRNA(Ile)-lysidine synthetase [Finegoldia magna BVS033A4]
 gi|302493838|gb|EFL53620.1| tRNA(Ile)-lysidine synthetase [Finegoldia magna BVS033A4]
          Length = 451

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 22/290 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               IL+ +SGG+DS+ LL  L  +  D  F   +     ++H  R+TA  +  +   + 
Sbjct: 19  KHDKILIGLSGGADSVFLLNILIQLQRDLDF---EIYTCHINHSYRDTALRDENFSRKIS 75

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I          +        L  + R  RY   +E  K+ +   I  AH  DDQ+E
Sbjct: 76  EENNIKFFSKKVDMKQYSIDNSISLEDSGRILRYKYFNEILKSEDLNKIAVAHHLDDQVE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T ++   R     G  L G+        N  I RP L   + +I ++L + +I +  D +
Sbjct: 136 TFFLHLFRGSGIDG--LCGIQ-----YQNKNIIRPLLDVSKSEILNYLDENDIDYVTDET 188

Query: 194 NTDDRFERVRVRRFVRDIDL--------HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           N     +R ++R  +              ++Y  +   +D +  +++       K +   
Sbjct: 189 NFVADVQRNKIRLEMLPYIQDNFNSSISDSIYRTINILKDSKEIIDDVTNFKYKKLVNQE 248

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
                           ++   ++R       G         ++ ++  L 
Sbjct: 249 NGEYFIDVNLFEREKKSVKRNIIRKLLIELNGSNQDIRMVYIDDIIELLD 298


>gi|302342198|ref|YP_003806727.1| tRNA(Ile)-lysidine synthetase [Desulfarculus baarsii DSM 2075]
 gi|301638811|gb|ADK84133.1| tRNA(Ile)-lysidine synthetase [Desulfarculus baarsii DSM 2075]
          Length = 466

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 145/375 (38%), Gaps = 28/375 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +    P  ++ AVSGG+DS+ +L  L    S+R +   +     VDH LR  +  +  +
Sbjct: 2   AKPWPGPGTLVAAVSGGADSVAMLRLLAEQASERGW---RLVVGHVDHGLRADSAVDAAF 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V+D+   L +   VV     +       AAR AR   +   A+ ++A  +  AHT DDQ 
Sbjct: 59  VADLAGALGLECRVVRVVARQAGLSPEDAARRARRQALLALAEELDAVAVALAHTIDDQA 118

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV  R        G+             +  + RP L  R  ++R +L      W EDP
Sbjct: 119 ETVLARLLTGAGPGGLAAM-------RPRSGPLWRPLLAVRGRELRDYLAALGQPWREDP 171

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM----LIPKYLTVHMRS 248
           SN D  ++R R+R  V  +    +  +  +       +          L+   L  H R 
Sbjct: 172 SNADRAYQRNRLRHAVLPLCRQLINPRADEALARLAGLLADEEDYWRGLLDDALAAHGRR 231

Query: 249 IIAISQ----DILNIDSTLLFYLLRVSA--AICGGQISLPGYRSMERVMLFLKSGKRGCV 302
             A        +L     L   ++R  A   + GGQ  L  + +    +L + +GK   +
Sbjct: 232 EGASLCLSLGWLLAQPPFLRRRMMRHIAGRLLGGGQHLLFDHVAGLERLLTMAAGKSLTL 291

Query: 303 SIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLI--QIGPQSYR 360
             G +   R    L +   V + P L +  +   + D       L  +L+  ++ P +  
Sbjct: 292 PFG-LRAWREHEHLRLAPDV-DPPPLRVRLDGPGLVD----LPALGTALLAREVAPGATL 345

Query: 361 KADVPSGIPPIIAQR 375
           +A       P+   R
Sbjct: 346 RARGGRAWLPLEDVR 360


>gi|71064744|ref|YP_263471.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4]
 gi|71037729|gb|AAZ18037.1| hypothetical protein Psyc_0164 [Psychrobacter arcticus 273-4]
          Length = 525

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 120/321 (37%), Gaps = 29/321 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           ++   I +A SGG DS+ L      +        +    + V+H L+  +    ++V++ 
Sbjct: 38  LHGRRIWLACSGGRDSLALAALCVQLYQQSRLPFLP-QLLHVNHGLQADSDIWAQHVAEW 96

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             R +I  +++  + +        AAR+ARY ++    +     +++ AH  DDQ ETV 
Sbjct: 97  AKRQKIPCTILQAQVNGHD---EQAARQARYDVMRT--QLNQDDVLLLAHHADDQAETVL 151

Query: 137 MRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           MR  +     G+ G+            + + RP+L  +R  I ++  +  +S+ +DP+N 
Sbjct: 152 MRLVQGAGLNGLTGMQPWRVQTQGVHRIVLWRPWLTIQRASISTYAQRLKLSYIDDPTND 211

Query: 196 DDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKY----LTV 244
                R  +RR +  +        +  +    +   D ++ V+   +  + +     L +
Sbjct: 212 GGDNVRSGLRRDIMPVLAKYNPNVIDNIARSAQLLSDAQLIVSAQASQDMQQTAIASLQL 271

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME----RVMLFLKSGKRG 300
                +    ++  +       LL    A       LP  + +     R+        + 
Sbjct: 272 SSAQRVLDINEVKQLPLYRQRQLLHYWLA---QDEPLPPAKQLVDDVWRLSQRHDHDHQT 328

Query: 301 CVSIGR----VVIDRRANFLW 317
            +          I R    L+
Sbjct: 329 ALFWQGRKQSYTIRRYREQLY 349


>gi|282600859|ref|ZP_06257767.1| tRNA(Ile)-lysidine synthase [Subdoligranulum variabile DSM 15176]
 gi|282571163|gb|EFB76698.1| tRNA(Ile)-lysidine synthase [Subdoligranulum variabile DSM 15176]
          Length = 464

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 126/324 (38%), Gaps = 36/324 (11%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E++  + R          ++ A SGG+DSM     L  +L  R   +I+  A  V+H +R
Sbjct: 14  ETLLAYCRQQGLFKSGDRVIAACSGGADSMA---LLLFLLRRRRDLEIEVLATHVNHGIR 70

Query: 64  E-TAKDEVRYVSDVCSRLRIAHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
              A  +  +V+  C +  +   +   V      PQ      AR  RY    + A    A
Sbjct: 71  GVNAIADANFVTAFCRKNGVELFLYDAVKEGVQIPQQPSEEWARGLRYGWFDQLAVQEEA 130

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I TAHT  DQ+ET+  R  R     G G+ GM    +     +  RP L   R +  +
Sbjct: 131 -FIATAHTMSDQVETILFRMAR-----GTGVHGMAG--IPPRRGYYIRPCLCLTRGETEA 182

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +      ++ +D +N  D + R R+R       + AL       +    ++   +  L  
Sbjct: 183 YCTALGQNYVQDETNAQDTYARNRIRHD----AIPALQYANPAAEVAIARLCRQMRDL-D 237

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGK 298
           ++LT    +++        ++      +LR +          P    ++  ++  ++  +
Sbjct: 238 QWLTGEAAALL----QAATVEKGYDISVLRKA--------EGPVLDAALHSLISPVRDAE 285

Query: 299 RGCVSIGRVVIDRRANFLWITRAV 322
              +++ R ++ R    L +T  V
Sbjct: 286 EKYITLLRFLLQRGEGALQLTPEV 309


>gi|284043133|ref|YP_003393473.1| tRNA(Ile)-lysidine synthetase [Conexibacter woesei DSM 14684]
 gi|283947354|gb|ADB50098.1| tRNA(Ile)-lysidine synthetase [Conexibacter woesei DSM 14684]
          Length = 455

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 118/287 (41%), Gaps = 24/287 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ++V +SGG DS+ LL     +      G    SA+ V++ LR+ A D+ R+ + 
Sbjct: 16  LAAGGPVVVLLSGGRDSVCLLDVAVRIA-----GAPAVSAVHVNYGLRDDADDDERHCAQ 70

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLIMTAHTFDDQLET 134
           +C RL +A +V           L A AR+ RYA  ++ A T+     I T HT  DQ+ET
Sbjct: 71  LCERLGVALAVERPSRPAGSGNLQAWARDVRYAAAAQRALTLGPGAAIATGHTASDQVET 130

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +  R     +     L GM        +  + RP L   RE+  ++   R + W +D +N
Sbjct: 131 ILYRLA--SSPSRRALLGM-----RPRDGRLVRPLLGLTREETTAYCEARGLPWRDDATN 183

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            + ++ R R+R         AL   +++           +A L+     V + +++A   
Sbjct: 184 EEGKYARNRLR--------LALIPALREAHPAAEANVLRLAELLRDEADV-LDALVAEQL 234

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           D             R +  +   Q   P  R +  V+  L  G  G 
Sbjct: 235 DGRGAPGAGAEREARATIPLARLQALAPALRRL--VVQRLADGAAGR 279


>gi|216263345|ref|ZP_03435340.1| tRNA(Ile)-lysidine synthetase [Borrelia afzelii ACA-1]
 gi|215980189|gb|EEC21010.1| tRNA(Ile)-lysidine synthetase [Borrelia afzelii ACA-1]
          Length = 440

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/293 (21%), Positives = 114/293 (38%), Gaps = 25/293 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68
           +F+ ++ +    ++VA SGG+DS  LL+ L   LS+         A    H +R   +  
Sbjct: 14  KFYKKNSLNKNRVIVAFSGGADSTTLLLNLKYYLSN------NIIAFYFAHFIRPDNEQN 67

Query: 69  -EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    IA  +      +  ++ +    +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIALQIKKCDIDIKSESVRLGVSIEELARKCRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+         +  +N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGL-------VGIPSVNKNIIRPLLEVSRPEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NI    D +N+ + + R +VR  +            K  + +       V       
Sbjct: 181 SLNNIRVFIDSTNSQNLYLRNKVRNNLLPSIEKIFKGYEKCLKRISEFSKEFVNYFEKDE 240

Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
                +     S D+   L+    L+F L+        G ++   Y+++  + 
Sbjct: 241 FFPVEKGKYYYSFDLKAFLDFPKYLVFRLI-FKILNSEGIVAKISYKALNELF 292


>gi|92112713|ref|YP_572641.1| tRNA(Ile)-lysidine synthetase-like protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91795803|gb|ABE57942.1| tRNA(Ile)-lysidine synthetase-like protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 430

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 72/333 (21%), Positives = 126/333 (37%), Gaps = 22/333 (6%)

Query: 15  SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           ++  P   + VA+SGG DS  LL    +             A+ V+H L++ A D   + 
Sbjct: 20  AMTSPGRCVWVALSGGLDSSLLLTLAVAACRRHPRP---LYAVHVNHGLQDAAADFEAHA 76

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +C RL +   V   +  +   GL A AR+AR A  +   +      ++ A   DDQ E
Sbjct: 77  RWLCGRLGVPLFVERARVERGARGLEAHARDARLAAFA--RRVAPGETLLLAQHADDQAE 134

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +   R    +GM  + M +   +   +   RP+L   R  +      R + W +DPS
Sbjct: 135 TLLLAGLRGSGLRGM--AAMPERREWQGRVM-VRPWLSVTRAALAREAEARGLRWIDDPS 191

Query: 194 NTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N D+RF+R  +RR V              + +  +   + +  +  L  + L        
Sbjct: 192 NADERFDRNYLRRSVMPALASRWPEAATSLSRTAEQLGESDALLEELAGETLQALGGDAA 251

Query: 251 AIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM--LFLKSGKRGCVSIGRV 307
            +   D+L +       L+R +       +  P    +E ++  L  +   +  V     
Sbjct: 252 CLPVADLLALSRPRQRLLVRHACRQLS--LPTPPRARLESLLEQLEARGDAQIHVDWPGG 309

Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDG 340
              R    L +       P   +  +   VWDG
Sbjct: 310 EARRWQGHLHLL-----APREPVDVDWQAVWDG 337


>gi|257093683|ref|YP_003167324.1| tRNA(Ile)-lysidine synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046207|gb|ACV35395.1| tRNA(Ile)-lysidine synthetase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 468

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 124/335 (37%), Gaps = 17/335 (5%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L     + V +SGG DS+ LL AL  +      G    +AI VDH L   A    
Sbjct: 28  FLAARLAPGERLCVGLSGGRDSVVLLHALDGLRVRGLVGA--LAAIHVDHGLSANAGTWA 85

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + ++ C +L +   +V  +  +    G+ AAAR AR+ + +       A  +  AH  D
Sbjct: 86  GFCTEFCRQLGVPLDIVHVEVPRDDGEGIEAAARRARHRVFAGCC----ADWLALAHHQD 141

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV  R  R     G   +GM           + RP L   R  I  +  + ++ W 
Sbjct: 142 DQAETVLFRLLRGAGVAGA--AGMPAERSQAGGPRLIRPLLDVPRTLIAGYAAENSLVWV 199

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML-----IPKYLTV 244
           ED SN D R+ R  +R+ V      A     +           A A+L       +   V
Sbjct: 200 EDESNADCRYRRSHLRQAVLPRIEEAFPAAARTLARAAGHFAEAAALLDELAQADRATVV 259

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVS 303
                I + +    +       LLR   +  G +     +     R +  + S  + C++
Sbjct: 260 AAGGRIDLLR-FNALPPARARNLLRNELSAAGWRAPEARWLDEALRQLATVGSDSQTCIA 318

Query: 304 IGRVVIDRRANFLWITRAVRNLPT-LILYPEETTV 337
                ++     L++      LP   I +  E  +
Sbjct: 319 TPDGEVNVYRRQLYVCARRPPLPAGAIFWLGEARL 353


>gi|85714373|ref|ZP_01045361.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A]
 gi|85698820|gb|EAQ36689.1| tRNA(Ile)-lysidine synthase [Nitrobacter sp. Nb-311A]
          Length = 337

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 127/275 (46%), Gaps = 6/275 (2%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +S  E+   F       A +++AVSGG DSM L+       S  + G     A++VDH
Sbjct: 1   MPISAAEAKLLFADWKGERA-LVLAVSGGPDSMALMWLAARWRSAMTRGP-DLIAVTVDH 58

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E R V ++ + L + H  + W  +KP++GL AAAR ARY L++  A+   A+
Sbjct: 59  GLRRGSAREARDVKNLATSLGVTHRTLRWSGAKPESGLPAAARAARYRLLARTARANGAS 118

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I+TAHT DDQ ETV MR  R       GLS M    + D    ++RPFL   +  + + 
Sbjct: 119 HILTAHTRDDQAETVLMRISRGSGI--AGLSAMARETMRD-GFILARPFLNVPKSRLIAT 175

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIP 239
           L +  I + EDP+N D  F R R+R  +  +       + + +      + N A+ +L+ 
Sbjct: 176 LKKAKIDYVEDPTNRDLNFTRPRLRALMPALAEEGCDARNLARLASRLARANIALELLVD 235

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274
                      A            L   ++V   +
Sbjct: 236 GAERYLAVQDGAERPGFRTEAFAALSEEIKVRLLL 270


>gi|289450034|ref|YP_003475216.1| tRNA(Ile)-lysidine synthetase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184581|gb|ADC91006.1| tRNA(Ile)-lysidine synthetase [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 483

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 130/324 (40%), Gaps = 34/324 (10%)

Query: 1   MFLSPIESVRFFVRSLVYP-----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           + LSP+ +   + R L         +++VA SGG+DS+ LL  LH + +     K K   
Sbjct: 8   LVLSPL-AYSLYKRGLAENWWALMDNLVVACSGGADSLALLYVLHEIST---VVKFKLEV 63

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK---PQTGL----------MAAA 102
           I  +H LR  A +E   V  +   L++  ++  W       P   +            A+
Sbjct: 64  IHFNHGLRLEAAEEAAAVETIARSLQLPFTLGVWDRGNCATPSNSVGSNDFFDGISENAS 123

Query: 103 REARYALISEHAKTINAT---LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
           R+ARYA    +     A+    I  AH  DDQ ETV+ R  R     G G++G+     +
Sbjct: 124 RQARYAFFKHYLAENCASERSYIALAHHLDDQAETVFFRLMR-----GCGINGLQGMRNF 178

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
             +    RPFL+  +  ++S+L+  NI+W ED SN+D++F R  +R  +  +        
Sbjct: 179 --SGRYFRPFLQTPQAKLKSYLISHNIAWSEDASNSDEKFTRNYLRHSLLPLLSDKFGKN 236

Query: 220 MK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
            K    ++      A   L     +        +   +L   +  L   +     +    
Sbjct: 237 TKVHLANIAAAAAEAEDFLEDSAQSYLPNYGEPLDCHLLKDKAPALIKTVIRLFYVKNHP 296

Query: 279 ISLP-GYRSMERVMLFLKSGKRGC 301
             L   Y  + ++  F+  G+   
Sbjct: 297 TGLDINYAQLTKLADFILQGENNR 320


>gi|325849662|ref|ZP_08170865.1| tRNA(Ile)-lysidine synthetase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480003|gb|EGC83081.1| tRNA(Ile)-lysidine synthetase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 463

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 28/303 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F + +E  R    +      I+V  SGG DS  L+  L+ +   + F KI      ++H 
Sbjct: 11  FKNTVEKHRLIEEN----DTIIVGASGGPDSQFLIYLLNEL---KDFYKIDIILAHLNHM 63

Query: 62  LRETAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            R+ A D+   V +   +L     ++H  +     + +     A R  RY   +   K  
Sbjct: 64  HRQDAIDDENLVIETGKKLSLKTYVSHKSMDDYAKEKKISSENAGRILRYEFFNSLKKNY 123

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I  AH  DDQ ETV MR  R     G+             N  I RP +  ++  I
Sbjct: 124 KNAKIAVAHNMDDQAETVLMRIIRGSGLDGLKAMDYK-------NGHIIRPIMDFKKSQI 176

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             FL    I +  D +N    + R ++R  +    +  +    KK      +V+ +   +
Sbjct: 177 LKFLDYNKIDYHIDYTNLQRDYTRNKIRLDIIP-QIEKINPNFKKSLVNLSEVSKSDYEI 235

Query: 238 IPKYLTVHMRSII------AISQDIL---NIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
           +          I+       +S D +   N+   L   L+R +  +  G I      ++E
Sbjct: 236 LKDIEDDIFEKILVKKVKNKLSFDKIRFENLSDPLKMRLIRRAIFVLYGNIKDFSKINIE 295

Query: 289 RVM 291
            ++
Sbjct: 296 ELL 298


>gi|167816493|ref|ZP_02448173.1| putative cell cycle protein [Burkholderia pseudomallei 91]
          Length = 417

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+ D+ +         LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|237742841|ref|ZP_04573322.1| cell cycle protein MesJ [Fusobacterium sp. 4_1_13]
 gi|229430489|gb|EEO40701.1| cell cycle protein MesJ [Fusobacterium sp. 4_1_13]
          Length = 446

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +      +        L    RE RY   SE  K I A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKIEANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  R  + +G+         +   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FKLIRGTSLQGL-------EGIKVKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217


>gi|42560602|ref|NP_975053.1| hypothetical protein MSC_0042 [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|61216536|sp|Q6MUI9|TILS_MYCMS RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|42492098|emb|CAE76695.1| Conserved hypothetical protein [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320504|gb|ADK69147.1| tRNA(Ile)-lysidine synthetase [Mycoplasma mycoides subsp. mycoides
           SC str. Gladysdale]
          Length = 401

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 111/251 (44%), Gaps = 14/251 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+AVSGG DS+ LL  +  ++              V++  R  + ++   V+++C +
Sbjct: 10  KKYLIAVSGGPDSVFLLCNIVKLVDPN-----DLVVCHVNYNFRSDSNNDQMIVTNLCKQ 64

Query: 80  LRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           L +   +++        +    + AR  RY   +  A       ++ AH  +D +ET  +
Sbjct: 65  LNLKLEILNINKDYSLLKQNFESWARAQRYDFFNMIASKYQIYNLLVAHNLNDLIETYLL 124

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           + QR+      GL      + +  +L + RP L  ++  I ++L    IS+  D +N+D 
Sbjct: 125 QLQRNNLVDYYGL----KPVSHYKDLVVYRPLLDIKKSQILNYLNTNKISYAVDSTNSDI 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           +++R ++R  + + +   +  ++ K  +    +   V   +   +  +    + +++++ 
Sbjct: 181 KYQRNKIRATLNENNFTKILDQINKANNNLNSIKKIVDNYLKNNIINN---ELNLTKELF 237

Query: 258 NIDSTLLFYLL 268
            +D T +  ++
Sbjct: 238 LLDQTCIQRII 248


>gi|189220437|ref|YP_001941077.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4]
 gi|189187295|gb|ACD84480.1| tRNA(Ile)-lysidine synthase MesJ [Methylacidiphilum infernorum V4]
          Length = 307

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 117/314 (37%), Gaps = 19/314 (6%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           P+   +  + SL  P  +L  +SGG DS+ LL +L                +   H  R+
Sbjct: 7   PLNPFKEALESL--PDAVLCGISGGVDSIVLLHSLVETGKRP-------IVLHFQHGWRQ 57

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
             + + + V +    L +    +  K+ +      A AR  RY      A+  N   ++ 
Sbjct: 58  DEESDAKLVEETAKELGVEF--LKGKSPRALPKNEAMARMQRYRFFQSAAENKNCFNLVL 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ+ET  M+  R    +G G+    D I     L + RP L   + DI  F  QR
Sbjct: 116 AHHADDQVETFLMQLIRGTGSRGWGM----DRITTLGKLVVYRPLLDFWKSDIIRFAQQR 171

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           N  W ED +N +    R R+R+ +           +K+      +V       +   +  
Sbjct: 172 NFRWREDETNENTHLLRNRIRKELIPFLESRFSRSIKRSLWKCCEVLREEKKWLATLVQE 231

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKRGC-V 302
              S      D+ N        ++ +     G       +  +E +   L K GK+ C +
Sbjct: 232 FSCSPSLRLADLENTPIGKQRLIISLWLKKRGVAD--ISFEDIESIRSLLEKPGKKKCNL 289

Query: 303 SIGRVVIDRRANFL 316
           S    VI R    L
Sbjct: 290 SKKSAVILRNGEVL 303


>gi|326568391|gb|EGE18471.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis BC7]
          Length = 451

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 113/309 (36%), Gaps = 26/309 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M    + S+      L  PAH  + +A SGG DS+ L  A   +       ++  + + V
Sbjct: 1   MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            H  +      ++ V            ++    +K        AR+ARY           
Sbjct: 60  HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173
             ++M AH  +DQ ETV MR       +G+    +        +     + + RP+L+  
Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIL 174

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           R+ I  F     + + +D +NTD  + R R+R+ +    L      ++        ++ A
Sbjct: 175 RDKISQFAKAHALPYVDDITNTDPAYARGRIRQDILPHLLALNPKAVENIVRSAGLLSMA 234

Query: 234 VAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPG 283
             M+  +  T+     H  + +   Q     D LN+  +    +L           +LP 
Sbjct: 235 STMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291

Query: 284 YRSMERVML 292
              + + ++
Sbjct: 292 SHQLTQQVI 300


>gi|224534142|ref|ZP_03674722.1| tRNA(Ile)-lysidine synthetase [Borrelia spielmanii A14S]
 gi|224514567|gb|EEF84881.1| tRNA(Ile)-lysidine synthetase [Borrelia spielmanii A14S]
          Length = 440

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 112/292 (38%), Gaps = 25/292 (8%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKD 68
           F+ ++ +  + ++VA SGG+DS  LL+ L   L +         A    H +R       
Sbjct: 15  FYKKNSLNKSRVIVAFSGGTDSTTLLLNLKYYLRN------NIVAFYFAHFIRADNEQNQ 68

Query: 69  EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           E+ +V + C    IA  +      +  +  +    +   AR+ RY  +    K  +A  I
Sbjct: 69  EIEHVKEFCDFYNIALQIKKCDIDIKSEAIRLGVSIEELARKCRYNALENALKENDANYI 128

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AH  +DQ+ET+ MR  +     G+         +  +N  I RP L   R +I +FL 
Sbjct: 129 ALAHNENDQIETIIMRFFQGSFLDGLA-------GIPSVNGNIIRPLLEVSRLEIENFLS 181

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIP 239
             NI    D +N+ + + R RVR  +              +K+  +   +  N       
Sbjct: 182 LNNIRVFVDSTNSQNLYLRNRVRNNLLPSIGKVFKGYEKCLKRISEFSKEFANYFEKDEF 241

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
             +           +  L+    L+F L+        G ++   Y+++  V 
Sbjct: 242 FPVEKGKYYYSFDIKTFLDFPKYLVFRLI-FKILNSEGIVTKISYKALNEVF 292


>gi|167830049|ref|ZP_02461520.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei 9]
          Length = 424

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 67/319 (21%), Positives = 113/319 (35%), Gaps = 21/319 (6%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DDQ ETV ++  R     G+             ++   RP L   R  +  +  Q  
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERYAQQHA 188

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYL 242
           + W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+    
Sbjct: 189 LRWIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLA 244

Query: 243 TVHMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLK 295
            + +R++      +L+ D+ +         LLR      G    S      M + +   +
Sbjct: 245 AIDLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAAR 304

Query: 296 SGKRGCVSIGRVVIDRRAN 314
                 V      +    +
Sbjct: 305 DAHALRVDHAGWRLRLYRD 323


>gi|186685996|ref|YP_001869192.1| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102]
 gi|186468448|gb|ACC84249.1| tRNA(Ile)-lysidine synthetase [Nostoc punctiforme PCC 73102]
          Length = 331

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 117/331 (35%), Gaps = 28/331 (8%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I S   F R+      +L+AVSGG DS+     +  +L  +S           DH  R
Sbjct: 12  RTIRSRHLFERN----QRLLIAVSGGQDSL---CLIKLLLDLKSKWGWDLGIAHCDHRWR 64

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             ++    +V ++     I+      + +       AAAR+ RY  +S  A+  N   I+
Sbjct: 65  SDSQANANHVENLAETWGISFY---LETANEPINSEAAARDWRYQALSAIAQANNYQYIV 121

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T HT  D+ ET+     R     G  L  +         + + RP L   R     F  +
Sbjct: 122 TGHTASDRAETLLYNLIRGTGADG--LQALTWQRPLTTGIMLVRPLLEVTRIQTEQFCQE 179

Query: 184 RNISWCEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVA 235
             +   ED +N D ++ R R+R+ +              AL    +  Q     +  A  
Sbjct: 180 FKLPIWEDSTNQDLQYARNRIRQELIPYLRENFNPQVESALAQTAELLQAEVEYLEKAAQ 239

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL----FYLLRVSAAICGGQI--SLPGYRSMER 289
            L  K L +       I    L ++  +L      L R        QI      +  +E+
Sbjct: 240 QLREKALGIGDEEDSLIPLLPLRLNRRVLQKAPLALQRRVMRQVLQQILTDAASFEHIEK 299

Query: 290 VMLFLKSGKRGCV--SIGRVVIDRRANFLWI 318
           +   + +  R       G  +     +++++
Sbjct: 300 LTALITAPNRSQTDPFPGGAIAQVEGDWIYL 330


>gi|163854237|ref|YP_001642280.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1]
 gi|163665842|gb|ABY33209.1| tRNA(Ile)-lysidine synthetase [Methylobacterium extorquens PA1]
          Length = 342

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 139/314 (44%), Gaps = 15/314 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++  F+     PA  L+AVSGG DS  L+ A      D       F   +VDH LR  + 
Sbjct: 15  ALAPFLEEPARPA--LLAVSGGPDSTALMHAAARAGRDL------FRVATVDHALRPGSA 66

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           DE R V  + + L + H++++W   +  + + A+AR ARY L+++HA  I A LI+TAHT
Sbjct: 67  DEARAVGRLATELGLIHTILTWDAPRHGSRIQASARGARYRLLTDHAARIGAGLILTAHT 126

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV MR          GL+GM +  +    + + RPFL   + D+ ++     + 
Sbjct: 127 LDDQAETVLMRLIAGSGP--SGLAGMREERVLAPGIRLVRPFLSLSKADLVAYCEMHRLP 184

Query: 188 WCEDPSNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +  DPSNTD+RF R R+RR +       ++   L     +       +     +++ +  
Sbjct: 185 FLRDPSNTDERFTRARLRRLLPLLAEEGLNAARLARLAVRAGRDDAALRRQAEVVLAEIT 244

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
                 +    Q +      ++  ++  +          P  + +ER+   +       +
Sbjct: 245 RTDEGGLRLDGQGLRREPCAIVLRVVDAALDTVAPTHEAPVPKRLERLEALVLDALLPAL 304

Query: 303 SIGRVVIDRRANFL 316
           + GR +       L
Sbjct: 305 AEGRALRRTLRGVL 318


>gi|221068471|ref|ZP_03544576.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni KF-1]
 gi|220713494|gb|EED68862.1| tRNA(Ile)-lysidine synthetase [Comamonas testosteroni KF-1]
          Length = 334

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 123/323 (38%), Gaps = 29/323 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            V   V +      + VA SGG+DS  LL+A H+          +  AI V H L+  A 
Sbjct: 16  RVDVAVAAFNPALPLAVAFSGGADSSALLLACHARWPG------QVRAIHVHHGLQSAAD 69

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL----- 121
              ++   +C+R  IA  V +      Q      AAR+ RYA + + A            
Sbjct: 70  GFQQHCEQLCARHGIALKVCAIDARNVQGQSPEDAARQGRYAALIQAAGQPWLAADGAPL 129

Query: 122 -----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                +  A   DDQ+ET+ +   R     G+              L   RP L    + 
Sbjct: 130 DAVRSMALAQHADDQVETLLLALSRGAGVAGLAAM---PGHWQRAGLQWFRPLLAVPGQA 186

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +R +L  R +SW EDP+NTD  + R R+R  +  + L  ++ + +             + 
Sbjct: 187 LRDWLRLRGLSWVEDPTNTDQGYTRNRIRAQLLPV-LEQVFPQFRSTFARSCAHCAQASE 245

Query: 237 LIPKYLTVHMR--SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
           L+ +     ++   +    + +  +    L  +LR    +     + P    + ++M  +
Sbjct: 246 LLDEQAAADLQMVGLPPAIKALQRLSEARLGNVLRYWLRVA--HDTTPTAAQLAQLMAQV 303

Query: 295 ----KSGKRGCVSIGRVVIDRRA 313
                 G    + +GR  ++R+ 
Sbjct: 304 GVCTTRGHHIHIKVGRGFVERQG 326


>gi|225181433|ref|ZP_03734876.1| tRNA(Ile)-lysidine synthetase [Dethiobacter alkaliphilus AHT 1]
 gi|225167831|gb|EEG76639.1| tRNA(Ile)-lysidine synthetase [Dethiobacter alkaliphilus AHT 1]
          Length = 474

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 129/353 (36%), Gaps = 29/353 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  I+  + F+        ++VAVSGG DS+ LL  L  + +      I      + H L
Sbjct: 6   LRTIQKNQLFL----PGQKVVVAVSGGPDSLMLLHVLWELSAKLG---ITLHVAHIHHGL 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTIN 118
           R  +  E   V  +   L +  SV       +  K  T L A AR+ RY  +   A  + 
Sbjct: 59  RAESDQEAVAVKKMALGLGLPVSVSRVNVGNRRQKTGTSLQATARQVRYGALERIAHRVG 118

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  I TAH  DD +ET+    +        GL G     +    L + RP     R++I 
Sbjct: 119 AACIATAHHRDDLVETL--LLRLLSGSGLDGLKGFPMQRVLPSGLSVVRPLYDVTRKEIE 176

Query: 179 SFLLQRNISWCEDPSNTDDRFERV--------RVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           ++     +    DP+N    + R          + R        +L             +
Sbjct: 177 AYCRTYKLKPLHDPTNRKADYLRNRVRLRLLPFLEREFGSHVRQSLARVAALLGQDSTLL 236

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
               +    +      R+ + ++ + L+ +   L   ++R +    G  +  PG   +E+
Sbjct: 237 TEVTSDAFARVCETAGRNSVVLNINKLHALPPALQARVVRSALWQSG--VKRPGRLHVEQ 294

Query: 290 VM-LFLKSGKRGCVSIGRVVID-RRANFLWITRAVRNLP---TLILYPEETTV 337
           V+ L  K      +++   V   R+ + L I R           ++ P +T +
Sbjct: 295 VVALTKKESPSAQLTLPDEVRAWRQYHRLCIGRPEAEPQIEGIEVVVPGQTCL 347


>gi|320528645|ref|ZP_08029798.1| tRNA(Ile)-lysidine synthetase [Solobacterium moorei F0204]
 gi|320131011|gb|EFW23588.1| tRNA(Ile)-lysidine synthetase [Solobacterium moorei F0204]
          Length = 401

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 86/225 (38%), Gaps = 20/225 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              LVAVS G DSM LL              I  +   V++  R  A +E  Y+   C +
Sbjct: 6   GKWLVAVSSGPDSMALLQMCID-------AGIDCAVAHVNYHHRPEADEEENYIRSFCVK 58

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   V +   +       AAAR+ RY    E  +      ++  H  DD LET  M+ 
Sbjct: 59  KGIPIFVHNEPFTYTG-NFEAAARDLRYRFFVEIVRYEGFQGVLIGHHQDDLLETYIMQE 117

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            ++   +  GL       +    +   RP L   +E++  +  +  + +  D +N  D +
Sbjct: 118 SKNIVPEYYGL----REEMLMHGVLFKRPLLHVAKEELVRYCKEHQLHYYIDATNLSDEY 173

Query: 200 ERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            R ++R  +        R+  L  +  +    Q+ R +V   +  
Sbjct: 174 TRNQIRHQIVEPMTSFERNAYLREIKQRNAVLQERRCRVKTYIRQ 218


>gi|295104817|emb|CBL02361.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 478

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 67/318 (21%), Positives = 110/318 (34%), Gaps = 27/318 (8%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +R  +     P  +  AVSGG+DSM     L  +   +       SA  V+H LR  + D
Sbjct: 14  IREGLLQPGTPLQLAAAVSGGADSMA---LLLLLRQLQPRFGYTLSACHVNHGLRGQSAD 70

Query: 69  -EVRYVSDVCSRLRIAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            +  +V   C+RL +   V         P       AR  RY    +  +      I TA
Sbjct: 71  RDEAFVRAECARLGVPLRVFHAAELTPPPAHAGEDWARRLRYTAFVQL-QGQGIDAIATA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT +DQ ET+ +R  R     G G        +        RP L   R +  +      
Sbjct: 130 HTANDQAETLLLRLARGTGLHGAG-------GIRPRRGCYLRPLLCLSRAETEAVCRAAG 182

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            +W  D +N  D + R R+R       L AL            +     A          
Sbjct: 183 QTWVTDETNDTDAYARNRLRHS----ALPALKSTNAAAVQNLARFCEKAARADAYLAAGA 238

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
            + + A         +   + LL + AA       L    ++  ++  ++  +   V + 
Sbjct: 239 AKLLAAARL----PGAEPAWQLLPLQAA-----DPLLLETALHSLVAPVRDAEEKYVQLL 289

Query: 306 RVVIDRRANFLWITRAVR 323
             V+ + +  + +T  VR
Sbjct: 290 CAVVRQGSGAVQLTGQVR 307


>gi|261749297|ref|YP_003256982.1| putative tRNA(Ile)-lysidine synthetase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497389|gb|ACX83839.1| putative tRNA(Ile)-lysidine synthetase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 440

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 119/330 (36%), Gaps = 37/330 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  I  ++ F  SLV    I VAVSGG DSM        +        +       +  
Sbjct: 10  FLEKI--IKSF--SLVEKKKICVAVSGGLDSM------VLLNLLLLVPNLTLGVAHCNFT 59

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKT 116
           LR+  + ++  +V + C++  I   V  +       + +  +  AAR+ RY       + 
Sbjct: 60  LRDKESNEDENFVKNFCAKKHILCHVKRFNTFDFSKRNKFSIQMAARKLRYDWFENLLEK 119

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +   H   D +ET ++   R    KG+         +   N    RP     +E+
Sbjct: 120 HSYDHMALGHHLSDSVETFFINIMRGTGLKGL-------LGIPRENRKFIRPLSSFTKEE 172

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK----FQDLRVKVNN 232
           I  +   + ++W  D SN ++++ R ++R  +      + Y   KK         + + +
Sbjct: 173 ILHYAKMKKVNWRLDHSNQENKYLRNKIR-LITSTFSDSFYKGFKKSIKYLHQENLVIES 231

Query: 233 AVAMLIPKYLTVHMRS--IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
            V  +  K       +     I    +     L FYL ++            G+ ++E +
Sbjct: 232 EVTKINKKITLEKKENPFFWKIECKKIKELQPLSFYLFKLF--------FPYGFSNIEDL 283

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
              L +     +   +  I +  N   + +
Sbjct: 284 KNLLYAQSGKQLFSKKYRIIKNRNHWILVK 313


>gi|326574306|gb|EGE24253.1| tRNA(Ile)-lysidine synthase [Moraxella catarrhalis O35E]
          Length = 451

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 113/309 (36%), Gaps = 26/309 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M    + S+      L  PAH  + +A SGG DS+ L  A   +       ++  + + V
Sbjct: 1   MTDDILTSLSSAFDELALPAHAKLYLACSGGRDSLALAYACFLLYRQGKIIRLP-TILHV 59

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            H  +      ++ V            ++    +K        AR+ARY           
Sbjct: 60  HHGWQAANDAWMQLVHRWAIEHGFDCQILRITLAK---NSETHARDARYQAFGLVMNQ-- 114

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-----LWISRPFLRCR 173
             ++M AH  +DQ ETV MR       +G+    +        +     + + RP+L+  
Sbjct: 115 GDVLMLAHHANDQAETVLMRLVSGAGLQGLSGMKVWQAKTVHTDEAAKTITLWRPWLKIL 174

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           R+ I  F     + + +D +NTD  + R R+R+ +    L      ++        ++ A
Sbjct: 175 RDKISQFANAHALPYVDDITNTDPAYARGRIRQDILPHLLALNPKAVENIVRSAGLLSMA 234

Query: 234 VAMLIPKYLTV-----HMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPG 283
             M+  +  T+     H  + +   Q     D LN+  +    +L           +LP 
Sbjct: 235 STMVDQQVGTLLASLDHPANQMPYQQVLGIKDFLNLSKSEQALVLHRWLQA---DEALPP 291

Query: 284 YRSMERVML 292
              + + ++
Sbjct: 292 SHQLTQQVI 300


>gi|269792457|ref|YP_003317361.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100092|gb|ACZ19079.1| tRNA(Ile)-lysidine synthetase [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 469

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/279 (24%), Positives = 109/279 (39%), Gaps = 29/279 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ++VAVSGG DS+ L + L                  VDH +RET+  +  +VS +    
Sbjct: 32  KMVVAVSGGGDSVALALLLKRFWPGEQVWG------HVDHGIRETSGRDADFVSALAESW 85

Query: 81  RIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            I   V  +           +  AAR  R+A + + A  + A  I TAHT DDQ ETV +
Sbjct: 86  GIRCHVGRFHVPTDRIKGESMEMAARRVRHAFLEDLASRLGAGFIATAHTVDDQAETVML 145

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R     G GL G+    +        RP +  RR ++R +L + ++SW ED +N   
Sbjct: 146 NLLR-----GTGLWGLAG--IPQRRGPWVRPVIAMRRWELRRYLEESSVSWVEDETNLCC 198

Query: 198 RFERVRVRRFVRDIDLHA---------LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            + R +VR  +      A          +L ++     R       A+L      +H   
Sbjct: 199 DYRRNQVRLELIPQVERAFNPRFSERLFFLSLESAARRRQVEERRGAILPWLKRRLHPAP 258

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
           +    +    +    L   LR      G ++ LP    +
Sbjct: 259 VCWDRKRASAVRGDDLLEALRAQ----GEELGLPSLDRI 293


>gi|226945924|ref|YP_002800997.1| PP-loop-tRNA(Ile)-lysidine synthetase [Azotobacter vinelandii DJ]
 gi|226720851|gb|ACO80022.1| PP-loop-tRNA(Ile)-lysidine synthetase [Azotobacter vinelandii DJ]
          Length = 435

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 98/306 (32%), Gaps = 20/306 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS  LL  L  +    +      +A+ V H L+  A D   +   VC++L + 
Sbjct: 22  LAFSGGLDSSVLLHLLAGLARHHALPP--LTALHVHHGLQSVADDWPEHCRQVCAQLGVP 79

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +   + +   +   AA      A            +++TA   DDQ ET+  R  R  
Sbjct: 80  LVIRRVRVAAGASLERAAREARYRAFAEALGAD---EVLLTAQHLDDQAETLLFRLLRGA 136

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G  L+ M          W+ RP L   R ++  + + R + W EDPSN D RF R  
Sbjct: 137 GVRG--LAAMPGMRPLGRG-WLVRPLLEVSRGELEHYAVSRALHWIEDPSNRDLRFSRNF 193

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----------HMRSIIAI 252
           +R  V           +         +  A  +L                   +      
Sbjct: 194 LRHRVLPSLAERWPQAVGNMARSAAHMAEARELLDDLAQLDLAAAGGEGGLPWLGLPSLA 253

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
              +L +        LR   A          +   E +             +    + R 
Sbjct: 254 LAPLLGLSPARQRNALRHWLAPFTALPDSAHWAGWEALRD-AAPDAAPLWRLAGGELRRG 312

Query: 313 ANFLWI 318
              +W 
Sbjct: 313 TGRIWW 318


>gi|152988564|ref|YP_001346885.1| hypothetical protein PSPA7_1501 [Pseudomonas aeruginosa PA7]
 gi|150963722|gb|ABR85747.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 439

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 115/373 (30%), Gaps = 31/373 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS    +        RS      SA+ V H L+  A     +   VC  L I 
Sbjct: 25  VAFSGGLDSTV--LLHLLARLARSEALPALSALHVHHGLQTAADAWPAHCQAVCRSLGIP 82

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V   + +     +  AAR ARY      A      +++TA   DDQ ET+  R  R  
Sbjct: 83  LRVERVQVA-VTGSIEQAARAARYRAFQ--ASLGEGQVLLTAQHLDDQAETLLFRLLRGA 139

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +G+        +       + RP L   R ++ ++     + W EDPSN D RF R  
Sbjct: 140 GLRGLAAMPASRPL---GGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFARNY 196

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R+ V                     +  A  +L                 D L++    
Sbjct: 197 LRQEVMPRLASHWPQAAAGMARCAAHLREAEELLGELAAIDLRACRAPSDPDWLDLPRIA 256

Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGCVSIGRVVIDRR 312
           L   LR   A     +       + R+           +            +    + R 
Sbjct: 257 L-EPLRRLGAARQRNLLRAWLAPLTRLPDSDHWAGWESLRDAGEDADPIWRLESGELRRG 315

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDS-----LIQIGPQSYRKADVPSG 367
           A  LW       LP          VW+       L  +     L ++ P   R      G
Sbjct: 316 AGCLWW------LPAAWRAAAGPFVWEHPAHPLALPGNGRLALLGELPPGPLRVDYRRGG 369

Query: 368 IPPIIAQRALSSM 380
               +A R    +
Sbjct: 370 EVLALAGRGRRDL 382


>gi|294784705|ref|ZP_06749993.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 3_1_27]
 gi|294486419|gb|EFG33781.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. 3_1_27]
          Length = 446

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +      +        L    RE RY   SE  K + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  R  + +G+         +   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FKLIRGTSLQGL-------EGIKVKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217


>gi|256846174|ref|ZP_05551632.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_36A2]
 gi|256719733|gb|EEU33288.1| cell cycle protein MesJ [Fusobacterium sp. 3_1_36A2]
          Length = 446

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +      +        L    RE RY   SE  K + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  R  + +G+         +   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FKLIRGTSLQGL-------EGIKVKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217


>gi|34763208|ref|ZP_00144172.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27887118|gb|EAA24225.1| Cell cycle protein MesJ [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 446

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +   ++F   K   + ++H LR E A  + ++  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKL---KNFINFKIYLVHINHLLRGEDADSDEKFSIEYAKKN 79

Query: 81  RIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +      +        L    RE RY   SE  K + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEISKEVGKTLEEVGREERYKFFSEIYKKVEANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +  R  + +G+         +   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FKLIRGTSLQGL-------EGIKVKNNNIIRPISEIYKKDILEYLNKNKIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217


>gi|218295213|ref|ZP_03496049.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
 gi|218244416|gb|EED10941.1| tRNA(Ile)-lysidine synthetase [Thermus aquaticus Y51MC23]
          Length = 509

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 123/326 (37%), Gaps = 24/326 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+ R  +  L     +++AVSGG DS+ L   +            +     +DH LR  +
Sbjct: 6   EAFRERLLRLAPQDPLVLAVSGGGDSVALAHLVRRAGR-------RAVVAYLDHALRPDS 58

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            +++ +V D+  RL         +      +    L A ARE RYA +   AK + A  I
Sbjct: 59  GEDLLFVRDLAFRLGFPFYGERVEVGRIAKERGENLEALAREVRYAFLHRVAKEVGAKAI 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAHT DDQ ETV ++  +  A +G+G+         +    + RP L   RE +R++LL
Sbjct: 119 LTAHTLDDQAETVLLKLLQGTA-RGLGI--------REKEGMVVRPLLPFTREALRAYLL 169

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
               +W EDP+N D   +R  +R  V  + L       +             A L     
Sbjct: 170 GLGEAWREDPTNRDLSLDRNYLRLSVLPLILERFPRAREALARFAQAREEEEAFLEGVAE 229

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC- 301
              +            +   LL     V        +     R   R++  L+   +G  
Sbjct: 230 VRLLPDPRFFVPAFRALP--LLRAPEAVRRRALRRVLEALDLRPEARLIALLEEALKGRA 287

Query: 302 -VSIGRVVIDRRANFLWITRAVRNLP 326
               G  +  R    L++      +P
Sbjct: 288 GTLPGGYLARRYLGTLFLIPPSPQIP 313


>gi|15618905|ref|NP_225191.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|15836528|ref|NP_301052.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|16752030|ref|NP_445396.1| MesJ/Ycf62 family protein [Chlamydophila pneumoniae AR39]
 gi|33242366|ref|NP_877307.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183]
 gi|61216756|sp|Q9Z6R2|TILS_CHLPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|4377326|gb|AAD19134.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189770|gb|AAF38647.1| MesJ/Ycf62 family protein [Chlamydophila pneumoniae AR39]
 gi|8979370|dbj|BAA99204.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|33236877|gb|AAP98964.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183]
          Length = 319

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 21/263 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  F  SL      L+A+SGGSDS+ L   L           + F+A+ +DH  R T+
Sbjct: 12  KQLDLFFASLDVKKRYLLALSGGSDSLFLFYLLKE-------RGVSFTAVHIDHGWRSTS 64

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTA 125
             E + + ++C+R  +   + +    +     L   AR+ RYA + E  + ++A  I  A
Sbjct: 65  AQEAKELEELCAREGVPFVLYTLTAEEQGDKDLENQARKKRYAFLYESYRQLDAGGIFLA 124

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +DQ ETV  R           L  M +   Y  ++ + RP L   +  ++  L  R 
Sbjct: 125 HHANDQAETVLKRLLESAHL--TNLKAMAE-RSYVEDVLLLRPLLHIPKSSLKEALDARG 181

Query: 186 ISWCEDPSNTDDRFERVRVRRFV---------RDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           IS+ +DPSN D+R+ R R+R+ +         ++I    L L  ++  +L   +      
Sbjct: 182 ISYLQDPSNEDERYLRARMRKKLFPWLEEVFGKNITFPLLTLG-EESAELSEYLEKQAQP 240

Query: 237 LIPKYLTVHMRSIIAISQDILNI 259
                     +  +     ++  
Sbjct: 241 FFSAATHQDSQGELPCPDCLIQQ 263


>gi|296101358|ref|YP_003611504.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055817|gb|ADF60555.1| tRNA(Ile)-lysidine synthetase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 361

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 120/344 (34%), Gaps = 35/344 (10%)

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           CS   I   +          G+ A AR+ARYA     A       ++TA   DDQ ET  
Sbjct: 2   CSAWAIPLEIKRVVLRDEGLGIEAHARKARYAAF--TAALQPGEALVTAQHLDDQCETFL 59

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +  +R       GLS M +   +     + RP L   R  + ++  Q  +SW ED SN D
Sbjct: 60  LALKRGSGP--AGLSAMPERSDFA-GTQLLRPLLGESRASLEAWAQQYQLSWIEDESNQD 116

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--Q 254
           D ++R  +R  V    L  L  +   F D   +     A        +    +  +    
Sbjct: 117 DGYDRNFLRLRV----LPLLTARWPHFADATARSALLCAEQESLLDELLSEELAELISVN 172

Query: 255 DILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVM---LFLKSGKRGCVSIGRV 307
             L I        +R +A     +   + ++P    + R+       +     CV +   
Sbjct: 173 GALAIAPLEAMSPVRRAALLRRWLASHRATMPSRAMLGRIWDEVAQAREDATPCVHLNGF 232

Query: 308 VIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSG 367
            + R    LW  ++  +L  ++L       W    +   L   +  +  ++     +P  
Sbjct: 233 DVRRYKGQLWWVKSTPSLADVVLG------WPSPAKPLLLPWDMGSLSLETPGHVRLPKA 286

Query: 368 IPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             P+  +     +  +  + GG+ L        + P+ R  T  
Sbjct: 287 EEPVTVRFKASGMLHIVGRNGGRKLKKIWQECNVPPWLRDTTPL 330


>gi|302380148|ref|ZP_07268620.1| tRNA(Ile)-lysidine ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311931|gb|EFK93940.1| tRNA(Ile)-lysidine ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 451

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 14/237 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               IL+ +SGG+DS+ LL  L  +  D  F   +     ++H  R+TA  +  +   + 
Sbjct: 19  KHDKILIGLSGGADSVFLLNILIQLQRDLDF---EIYTCHINHSYRDTALRDENFSRKIS 75

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I          +        L  + R  RY   +E  K+ +   I  AH  DDQ+E
Sbjct: 76  DENNIQFFSKKVDMKQYSIDNSISLEDSGRILRYKCFNEILKSEDFNKIAVAHHLDDQVE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T ++   R       G+ G+C    ++ N  I RP L   + +I ++L + +I +  D +
Sbjct: 136 TFFLHLFRGS-----GIDGLCGIQYHNKN--IIRPLLDVSKSEILNYLDENDIDYVTDET 188

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N     +R ++R  +           + +     V +      +I        + ++
Sbjct: 189 NFVADVQRNKIRLEMLPYIQDNFNSSISESIYRTVNILKDSKEIIDDVTNFKYKKLV 245


>gi|225620287|ref|YP_002721544.1| putative Cell cycle protein MesJ [Brachyspira hyodysenteriae WA1]
 gi|225215106|gb|ACN83840.1| putative Cell cycle protein MesJ [Brachyspira hyodysenteriae WA1]
          Length = 450

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 15/259 (5%)

Query: 7   ESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63
           E+  F + ++  +    + VA SGG DS  LL   + +  + SF       I V++ LR 
Sbjct: 4   ETYNFLLSNIDDIKNKTLAVAYSGGIDSQVLLNIAYRLKDELSF---DLIIIHVNYNLRG 60

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLI 122
           E + ++  +  D+  +  I   V   K NS     +   AR  RY    E         +
Sbjct: 61  EDSTNDELFARDMAKKYNIEIYVKEIKPNSYNGKNIQLEARNDRYNFFEELHNKKIYDYL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + AH  DD  ET+  R  +                L D   +I RP L   R+DI  +  
Sbjct: 121 LIAHNKDDLAETIIYRMIKGAGTN-------VYKSLRDKKGYILRPILNFYRKDIEKYAK 173

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             N+   ED SN  + + R ++R  +  + L  +    K       K +     ++ K +
Sbjct: 174 NNNLEHREDVSNKKNYYSRNKIRNLIIPM-LEEINTNAKNNIIRFAKRSYEETYILRKKI 232

Query: 243 TVHMRSIIAISQDILNIDS 261
               +  I+     LNI+ 
Sbjct: 233 NKLYKKNISEKNTKLNIEK 251


>gi|256384073|gb|ACU78643.1| tRNA(Ile)-lysidine synthase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|256384905|gb|ACU79474.1| tRNA(Ile)-lysidine synthase [Mycoplasma mycoides subsp. capri str.
           GM12]
 gi|296455764|gb|ADH21999.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [synthetic
           Mycoplasma mycoides JCVI-syn1.0]
          Length = 401

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 134/317 (42%), Gaps = 18/317 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+AVSGG DS+ LL  +  ++   +          V++  R  + ++   V+++C +
Sbjct: 10  KKYLIAVSGGPDSVFLLCNVVKLVDPNN-----LVVCHVNYNFRSDSNNDQMIVTNLCKQ 64

Query: 80  LRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
             +   +++        +    + AR  RY   +  A       ++ AH F+D +ET  +
Sbjct: 65  FNLKLEILNINKDYSLLKQNFESWARVQRYDFFNMIASKYQIYNLLVAHNFNDLIETYLL 124

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           + QR+      GL      + +  +L + RP L  ++  I ++L    IS+  D +N+D 
Sbjct: 125 QLQRNNLVDYYGL----KPVSHYKDLVVYRPLLDIKKSQILNYLNTNKISYAIDSTNSDT 180

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           +++R ++R  + + +   +  ++ K  +    +   V   +   +   + + + +++++ 
Sbjct: 181 KYQRNKIRTTLNENNFTKILDQINKANNNLNSIKKIVDNYLKDNI---INNELNLTKELF 237

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRS---MERVMLFLKSGKR-GCVSIGRVVIDRRA 313
             D   +  ++     +   +  L    +   +E V   + S K    +++    + +  
Sbjct: 238 LFDQNSIQRIIYTYFKLINKESLLLNRSNKTIIEIVKRLVNSNKNHWKINLNDHSLIKDY 297

Query: 314 NFLWITRAVRNLPTLIL 330
           N L++ +     P  I+
Sbjct: 298 NKLFVIKNSLLEPKTII 314


>gi|297570853|ref|YP_003696627.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931200|gb|ADH92008.1| tRNA(Ile)-lysidine synthetase [Arcanobacterium haemolyticum DSM
           20595]
          Length = 361

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/296 (22%), Positives = 114/296 (38%), Gaps = 27/296 (9%)

Query: 4   SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             + + R  ++  +       +LV VSGGSDSM L   L  V        I   A+ VDH
Sbjct: 6   RFVNATRRALKEALEHCSDRVVLVGVSGGSDSMALAATLAFVAPKLG---ILVHAVCVDH 62

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +R  +  E  +V D+  +  +   V         +G    AREARY  I+ +A+++   
Sbjct: 63  GIRPESVQEAAFVRDILRKRGVPVEVCRVDV-DGSSGPEGNAREARYDAIATYARSLGNA 121

Query: 121 ----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               ++   HT +DQ ETV M   R    K +        +    ++ + RPFL   R++
Sbjct: 122 AGPAVVFLGHTQNDQAETVLMGFARGSGAKSIAGMPAVGHLPLHRDVPMQRPFLEFTRDE 181

Query: 177 IRSFLLQRNISWCEDPSNTDDR---------FERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +R+   + ++ W +DPSN  D            R  VR  +       L           
Sbjct: 182 LRTVCSELDVPWVDDPSNDLDGPWTCSDGSPLRRSAVRHRILPELQDVLGSGTIGAIART 241

Query: 228 VKVNNAVAMLIPKYLTVHM------RSIIAISQDIL-NIDSTLLFYLLRVSAAICG 276
             +  A    +  Y  + +      R+ I +  + L ++   +    L+ +    G
Sbjct: 242 ASMLQADNAALEHYARIELERVCTSRNPITLDCESLKDVPEAVRRRTLKYAVEESG 297


>gi|146281928|ref|YP_001172081.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri A1501]
 gi|145570133|gb|ABP79239.1| cell cycle protein mesJ, putative [Pseudomonas stutzeri A1501]
          Length = 382

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 89/277 (32%), Gaps = 18/277 (6%)

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
             AI V H L+    D   +   VC +L +   +V  +   P   L  AAR+ARY   S 
Sbjct: 2   IRAIHVHHGLQAAGDDWPAHCQRVCDQLGVTLEIVRVRVV-PGASLERAARDARYQAFS- 59

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A      L++T    DDQ ET+  R  R    +G+       ++       + RP L  
Sbjct: 60  -ACVGEGELLLTGQHRDDQAETLLFRLLRGAGVRGLVAMPDARSM---GRGSLVRPLLEV 115

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            R D+  +     ++W EDPSN    + R  +RR V  +                  +  
Sbjct: 116 SRADLEDYARANGLAWVEDPSNQQLEYSRNFLRREVLPLLQQRWPRAASSLARTAALMAE 175

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLL-----------FYLLRVSAAICGGQISL 281
           A  +L          +        LN+ S  L              LR   A        
Sbjct: 176 AQHLLDELAQQDLAAAQTGSDCRWLNLPSLALAPLRELTSARQRNALRHWLAGLTLAPDE 235

Query: 282 PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
             +   E  +   K        +    + R    +W 
Sbjct: 236 NHWAGWE-CLRDAKPDATPRWRLAGGELQRSGERVWW 271


>gi|171911398|ref|ZP_02926868.1| tRNA(Ile)-lysidine synthetase [Verrucomicrobium spinosum DSM 4136]
          Length = 332

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 131/316 (41%), Gaps = 26/316 (8%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           LV VSGG DS+        +      G  K     ++H LR   +  + ++V D+     
Sbjct: 26  LVGVSGGRDSVA------LLHFLLLLGYRKLIVCHLNHQLRDAESNTDAQFVRDLAIAHG 79

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + H  ++       ++ +T L  A R+AR A   + A   +   +  AH  DD +ET+  
Sbjct: 80  LGHEEITVDITAEAARTKTSLETAGRDARRAFFEQAAARHDCRNVFLAHHADDDVETILH 139

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R    +G  + GM         L I+RPFL   RE+I +++    +++ ED +N   
Sbjct: 140 HLFRGSGLRG--IRGMDPISNSPGGLLITRPFLEITREEIDTYITTHGLAFREDSTNAGS 197

Query: 198 RF---ERVRVRR----FVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHM 246
                 R R+R     F++++    +   +++F  L  +    + +A +  +  +  +  
Sbjct: 198 SLGAPTRNRIRHRVLPFLKEMFQREVAGTLQRFARLAGRDEDFLQSATSAFLTDHQLLQA 257

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-G 305
              + ++  +      L   +LR         +   G   +E  +  L S +   V++  
Sbjct: 258 DRSLTVNSALKTAHPALQSRILRWWLREV-HAVPNIGNAEIESALELLSSPRVSRVNLPS 316

Query: 306 RVVIDRRANFLWITRA 321
           ++ + R+A  L++ +A
Sbjct: 317 QLRLRRKAGRLFLEKA 332


>gi|33241260|ref|NP_876202.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|61216600|sp|Q7V9L9|TILS_PROMA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33238790|gb|AAQ00855.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus subsp. marinus
           str. CCMP1375]
          Length = 336

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/294 (17%), Positives = 113/294 (38%), Gaps = 17/294 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L Y + +L++VSGG DSM LL  +  +       + K      DH     ++     + +
Sbjct: 29  LPYGSSLLISVSGGQDSMALLKLILDLQ---RIYEWKVHVWHGDHGWHNQSRQIAEELEE 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128
            C   +++      + +K +      AR  RY  + + AK       ++    ++T HT 
Sbjct: 86  WCKCQKLSFFC--NRTNKQKVSTEEDARNWRYKSLIQQAKTLSKESPSLPCERVLTGHTA 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D+ ET  M   R    KG  LS + +    +  + + RP LR  R++      + ++  
Sbjct: 144 NDRTETFIMNLARGAHLKG--LSSLREDRTLETKIQLIRPILRFSRQETIQICDEMDLPI 201

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             DPSN++  + R ++R  +  +          +  +L  ++ +                
Sbjct: 202 WIDPSNSNIAYSRNKIRAEIIPVLESLHPQSTIRISNLAERLTSLQKDQHQLAHLALGAL 261

Query: 249 IIA--ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           + +  +S+  +   S  +  ++     +   +  L   + +E +   +   K  
Sbjct: 262 LTSTGLSRSKMTKLSKTVRAIILAQ-WLEDNKAPLLSSKQLEELSQKIGKNKGP 314


>gi|167933096|ref|ZP_02520183.1| putative cell-cycle protein [candidate division TM7 single-cell
           isolate TM7b]
          Length = 228

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 100/240 (41%), Gaps = 20/240 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++ A+SGG DS+ LL  L      + +         V+H +R  + ++  +V  + ++  
Sbjct: 2   LIAAISGGVDSIVLLDLLS-----KRYKTSDIIVAHVNHGIRVESSEDADFVRKMSAKYG 56

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + +  +        +     AR+ RY  + + +K  NA  I+TAH  DD +ET+ +   R
Sbjct: 57  MRYRQIDLNLGLHAS--EEVARDQRYTFLRKLSKEFNA-KIVTAHHADDIIETIAINLVR 113

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +G+ +    D         I RP     + D+  +  +  + W ED +N+ D + R
Sbjct: 114 GTGWRGLAVMSAKD---------IYRPLTCFYKNDLLLYAKKNGLEWREDSTNSSDLYLR 164

Query: 202 VRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
            R+R+ ++ ++      L    +    +   +N   A         ++     ++ +IL 
Sbjct: 165 NRLRKRIKTLNPSIKQNLIQLWRNQTKIARDINKETAKFSKNSRYFYLMISNDVAVEILR 224


>gi|205356113|ref|ZP_03222880.1| hypothetical protein Cj8421_1495 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345956|gb|EDZ32592.1| hypothetical protein Cj8421_1495 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 321

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + +L+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  +      +      K Q+     AR+ RY    +         ++ AH 
Sbjct: 55  LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ E   M+  R      +     C+      N  + RP L   +++I SFL +++I 
Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  D SN ++++ R  +R+   +  +   +  +K+          + + L      ++  
Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             I   Q +L         L+  +  + G  +S    + +
Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257


>gi|300769992|ref|ZP_07079871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762468|gb|EFK59285.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 443

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 142/435 (32%), Gaps = 43/435 (9%)

Query: 3   LSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ +E    +V   R       I++AVSGG DSM +                       +
Sbjct: 1   MNVLERFHRYVSQNRLFGPDDKIVLAVSGGKDSMLMARLFLE-------SNYPVIIAHCN 53

Query: 60  HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114
             LR E +  + + V     +  I   V  +       + +  +  AARE RY    E  
Sbjct: 54  FSLRGEESDLDQQLVEAFGEKYGIPVFVKRFDTQAYAEENKISIQMAARELRYQWFEELR 113

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  I  A   +D +ETV +   R     G GL+G+           I RP L    
Sbjct: 114 IAQGCAYISVAQHRNDHIETVLLNMIR-----GTGLAGLQGIQPKRE--RIIRPLLFLLA 166

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            +I   +    I + +D SN   ++ R ++R  +  +        ++ F     K   A 
Sbjct: 167 AEIAEAVRLLQIPYRDDQSNFSVKYARNKIRLNIVPLMEEINPEFVQSFTSSIDKFAGAY 226

Query: 235 AMLIP--KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            +L      +   +     ++ ++L    +L  YL   +      Q        +E ++ 
Sbjct: 227 QLLQDFVHPVRQSLFKENKVTTEVLIEKKSLEPYLTNTALLYELFQPYHFQKNVLEDLVA 286

Query: 293 FLKSGKRGCVS--IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG-RYQFQNLSD 349
             ++G          R+++DR    L  T         I   +E   W G R+  +  S 
Sbjct: 287 TWENGTGRIFESYTHRLLVDRTHLILHPTGPEVEAKVCIEESDEQAEWKGFRFNIEKSSS 346

Query: 350 SLIQ----IGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPVA 405
           + I     I    + K   P  I     Q      P    GK  ++ +            
Sbjct: 347 ADIVKEKHIAKIDWDKLQFPLQIRS--WQEGDIFYPLGMEGKKKVSDY----------FI 394

Query: 406 YAFSISFGKVFIPRL 420
                SF K  IP L
Sbjct: 395 QQKINSFAKARIPIL 409


>gi|313681435|ref|YP_004059173.1| tRNA(ile)-lysidine synthetase [Sulfuricurvum kujiense DSM 16994]
 gi|313154295|gb|ADR32973.1| tRNA(Ile)-lysidine synthetase [Sulfuricurvum kujiense DSM 16994]
          Length = 338

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 16/192 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    +L+A SGG DS  L   L           I F    V++  RET+  E +    +
Sbjct: 10  LREGRVLLAFSGGVDSTALFHLLLE-------NNIAFDIAHVNYHTRETSDAEEKNAERL 62

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +R  +     S +           ARE RY       K    T ++TAH  +D+LE + 
Sbjct: 63  AARHSLQCYAHSCRLG--GINFEHRAREERYRFFGYLMKKHGYTYLLTAHQLNDRLEWLM 120

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           M+  R       GL  M     +D    + I RP L   R+ I ++L +R I    D SN
Sbjct: 121 MQICRGS-----GLPEMLGIRSHDSRDGIEILRPLLEWDRDSIEAYLHERKIPHHIDESN 175

Query: 195 TDDRFERVRVRR 206
            D+R+ R   R 
Sbjct: 176 ADERYTRNFFRH 187


>gi|17545889|ref|NP_519291.1| cell cycle protein [Ralstonia solanacearum GMI1000]
 gi|61216686|sp|Q8Y074|TILS_RALSO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|17428184|emb|CAD14872.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
          Length = 462

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 118/302 (39%), Gaps = 9/302 (2%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA+SGG DS  LL A+ +         ++  A+ + H L+  A       + + + + 
Sbjct: 26  VAVALSGGRDSAALLHAVAAWRDAAGVP-VRLVALHIHHGLQADADAWEAACARMAAAVG 84

Query: 82  IAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            A  V   + S     G+  AAREARYA +        ATL++TAH  DDQ ETV ++  
Sbjct: 85  AAFRVRRVRVSTDAGRGIEEAAREARYAALDALCAETGATLLLTAHHLDDQAETVLLQLL 144

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R     G+    M      +  + + RP+L   R DI ++     ++W EDPSN D R+ 
Sbjct: 145 RGAGLDGLSAMPMA----RERRVTLLRPWLDVPRGDIEAYARAHALAWVEDPSNGDARYA 200

Query: 201 RVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           R  +R  +  +  H  A    + +      +    +  +    L     +       +  
Sbjct: 201 RNALRPLLAGMAGHFPAYRASLARSAAHLAEAAALIEEVAQTDLARIAPAGTLAVAGLAA 260

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
           +        LR   A  G +         +   +L  ++    CV +    + R     W
Sbjct: 261 LSGPRQRAALRAWLAGAGLRAVSSRRLEDLRAQLLGARADGAPCVRLPGAQVRRYRGQAW 320

Query: 318 IT 319
           I 
Sbjct: 321 IE 322


>gi|305432244|ref|ZP_07401407.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter coli JV20]
 gi|304444592|gb|EFM37242.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter coli JV20]
          Length = 321

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 12/215 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + SL+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILSLLKKGRNLLAFSYGSDSSALFHFLVQ-------KKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E +   ++         + S    K        AR+ RY    +     N + ++ AH 
Sbjct: 55  LEEQKAKELALEFHKKIFIKSAPVIK--GNFEKEARDFRYDFFEKICLEQNYSNLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQLE   M+  R      +     C+      N  + RP L   +++I S+L + +I 
Sbjct: 113 LNDQLEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFMSKDEILSYLKENDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           + +D SN ++++ R  +R+   +  +   +  +K+
Sbjct: 170 YFQDESNENEKYFRNYIRKNFSNAFVSKFHQGLKR 204


>gi|237736633|ref|ZP_04567114.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420495|gb|EEO35542.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium mortiferum ATCC 9817]
          Length = 441

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 29/295 (9%)

Query: 3   LSPIESV--RFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +S  E V  R    SLV     I+V  SGG DS+ L+  L  +   R         + ++
Sbjct: 1   MSLFERVASRNKKESLVENGDRIVVGFSGGPDSVFLVEMLLKL---REKIDFDIVLVHIN 57

Query: 60  HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114
           H LR E A+ +  +  +      +              +    L  A REARY+   E  
Sbjct: 58  HLLRGEEAQRDEDFSINYGKSKGLKVFARKINITSLGKEKGLSLEEAGREARYSFYKEVL 117

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  N   I  AH  DDQ+ET   R  R     G GLSG+             RP     +
Sbjct: 118 EKTNGNKIALAHNKDDQIETFMFRLTR-----GTGLSGLEGIATKRDRY--IRPISEIYK 170

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKFQDL 226
            +I ++L + NIS+C D +N ++ F R  +R        +         ++  +++ +D+
Sbjct: 171 SEIVNYLDENNISYCIDSTNLENEFTRNSIRIDLIPFIEKRYNPKFKDKIFSLIEEIRDI 230

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281
            + +   +        T+++ SI+   + I      L  YL +    +   +ISL
Sbjct: 231 NIFIEKEIEQF-SYNETINIESILKFPKSIR--GKILSKYLYKYGLEVNRKKISL 282


>gi|222111278|ref|YP_002553542.1| tRNA(ile)-lysidine synthetase [Acidovorax ebreus TPSY]
 gi|221730722|gb|ACM33542.1| tRNA(Ile)-lysidine synthetase [Acidovorax ebreus TPSY]
          Length = 335

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/330 (24%), Positives = 122/330 (36%), Gaps = 33/330 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S   +V  F   L     + VA+SGG+DS  LL+A  +          +  A  V H
Sbjct: 1   MTQSFDAAVAAFRPRLP----LAVALSGGADSTALLLACAARWPG------QVVAFHVHH 50

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINA 119
            L+  A    ++   +C RL I   V               AAR+ RY      A    A
Sbjct: 51  GLQAAADGFEQHCVALCERLGIPLWVRRVDARHAAGQSPEDAARQVRYKAFEALALDCQA 110

Query: 120 TL----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 I  A   DDQ+ET+ +   R     G+              +   RP LR    
Sbjct: 111 QAAIKTIALAQHADDQVETLLLALSRGAGVAGLAAM---PAQWQRAGMDWCRPLLRVAGA 167

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           D+R++L+ R+  W EDP+N D+RF R R+RR +    L AL     +F+D   +     A
Sbjct: 168 DVRAWLVARDERWVEDPTNADERFTRNRIRRQL----LPALQQAFPQFRDTFARSCEHAA 223

Query: 236 MLIPKYLTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                   +      AI Q      +  +       +LR    +     + P    +  +
Sbjct: 224 QASELLQELAAADAAAIGQPPRIAALRALGRARQANVLRHWLRV--HHATTPTAAQLNEL 281

Query: 291 MLFLKS----GKRGCVSIGRVVIDRRANFL 316
           +  L +    G R  + +G   + R A  L
Sbjct: 282 LDQLAACATRGHRIHLKVGGGYVVREAEVL 311


>gi|71906484|ref|YP_284071.1| PP-loop [Dechloromonas aromatica RCB]
 gi|71846105|gb|AAZ45601.1| PP-loop [Dechloromonas aromatica RCB]
          Length = 323

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/325 (20%), Positives = 113/325 (34%), Gaps = 26/325 (8%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
             V  F+ + + P+  + V +SGG DS+ LL  L  +         +  AI V H L   
Sbjct: 14  ARVGAFLAARLAPSERLAVGLSGGCDSVVLLHLLTRLGFAG-----RLDAIHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A     + +D C+ L +  ++     ++    GL AAAR+ARY++ +E A       ++ 
Sbjct: 69  ADAWGTFCADYCTGLGVPLTIRHVSVDTASGLGLEAAARKARYSVFAEVA----TDCLLL 124

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H   DQ ETV     R       G +GM     +       RP L   R +I ++ +  
Sbjct: 125 GHHRSDQAETVLFNLLRGTGV--TGAAGMPAERQFGRLRL-LRPLLASSRNEIEAYAMSA 181

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            ++W +D SN D    R  +R       L AL  +    +    +              +
Sbjct: 182 GLAWIDDESNADVSLTRNFLRHE----ALAALAQRFPAAEASLAQAAANFGEAAALLDEL 237

Query: 245 HMRSIIAI-SQDILNIDSTLLFYL------LRVSAAICGGQISLP-GYRSMERVMLFLKS 296
             +    I   +   +    +  L      LR      G Q+ +        R +     
Sbjct: 238 AEQDWQQIGDGEAARLSEMRMLSLPRLKNLLRHRLRRLGWQVPVATRLDEFARQLQSAGP 297

Query: 297 GKRGCVSIGRVVIDRRANFLWITRA 321
            +   + +    +      L     
Sbjct: 298 DRHPELVLPDGKMRAGRGLLHWMPE 322


>gi|46203193|ref|ZP_00208846.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Magnetospirillum magnetotacticum
           MS-1]
          Length = 343

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 129/318 (40%), Gaps = 12/318 (3%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DS  L+       + R+         ++DH LR  +  E R V  +   + +
Sbjct: 28  LLAVSGGPDSTALMHV-----AVRAGTGAHLRVATIDHGLRPGSAGEARAVGHLAGEMGL 82

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H++++W++ +  + +   AR+ARY L+++HA ++ A L++TAHT DDQ ETV MR    
Sbjct: 83  THAILAWESPRSGSRIQETARDARYRLLTDHAASLGADLVLTAHTLDDQAETVLMRLMAG 142

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD----- 197
                 GL+GM         + ++RPFL   + D+ ++     + +  DPSNTD+     
Sbjct: 143 SGP--AGLAGMRHERPLAPGIRLARPFLAVPKADLVAYCEAHRLPFVRDPSNTDERFARA 200

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R  R+        +    L    ++       +    A ++ +        ++     + 
Sbjct: 201 RLRRLLPLLAAEGLSAARLGRLAERVGRDEAALEQHSAAVLAQVADTVDGGLLLDGDRLR 260

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
                ++  +L  +             R +ER+   +       ++ GR +       L 
Sbjct: 261 QEPPAIVLRVLDAAIDAVAPACPQVAPRRLERLENLVIEALLPALAEGRALRRTLRGVLV 320

Query: 318 ITRAVRNLPTLILYPEET 335
                R L      P   
Sbjct: 321 EADRTRKLRLGAAPPRRR 338


>gi|124267639|ref|YP_001021643.1| putative cell cycle protein [Methylibium petroleiphilum PM1]
 gi|171769838|sp|A2SIL9|TILS_METPP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|124260414|gb|ABM95408.1| putative cell cycle protein [Methylibium petroleiphilum PM1]
          Length = 452

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 138/375 (36%), Gaps = 31/375 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           RS   P  + VA SGG DS  LL A  ++++ R  G +   A+ V H L   A   + + 
Sbjct: 14  RSAEPPRGLAVAYSGGRDSTALLHA--TLIAARDSG-LTVHALHVHHGLSARADAWLAHC 70

Query: 74  SDVCSRL---RIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
              C R     +     + +     +    L A AR ARYA +   A      L++ AH 
Sbjct: 71  ESQCRRWARRGLPVCFRAMRVQLACRSGDSLEAVARAARYAALRTLAVEQGVALVLLAHH 130

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             DQ ET+ +++ R       GL+GM  +I  D  +  +RP+L   RE I +++ +  +S
Sbjct: 131 QRDQAETLLLQALRGAGV--AGLAGMPRSIERD-GITWARPWLARPREAIEAYVRRYRLS 187

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           + +D SN D RF R R+R  V      A         D       A A +          
Sbjct: 188 YIDDDSNDDPRFARNRLRLQVWPALQAAFPQAEGTLADAARWAQQAAACVADLAALDLAA 247

Query: 248 SIIAISQDIL----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
                    L     +      + LR      G  ++ P    +ER+M  L +G      
Sbjct: 248 CAATNDVLPLTAWRQLAPHRAVHALRRWLQQAG--VTAPTAADLERLMAELPAGAPARWP 305

Query: 304 IGRVVIDRRANFLWI------TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           +    + R    L        TR    +    L         GRY+   L      +  +
Sbjct: 306 LKGGELRRYRGELRFVPTPDATREPPAVRETTLALRRG----GRYR---LPGWGGVLVAE 358

Query: 358 SYRKADVPSGIPPII 372
             R   VP+    ++
Sbjct: 359 RVRAGGVPAAQLAVL 373


>gi|85372930|ref|YP_456992.1| ATPase [Erythrobacter litoralis HTCC2594]
 gi|84786013|gb|ABC62195.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 319

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 119/297 (40%), Gaps = 23/297 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VAVSGG DS      L  +L   +    +  A ++DH LR  A DE   V  +C RL
Sbjct: 15  RLGVAVSGGPDS------LALLLLANTALPGRVVAATIDHGLRPEAADEAAMVGGLCERL 68

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            + H  V              AR+ARY  +        A    TAH  DDQ ET+ MR  
Sbjct: 69  GVLHHTVEVALEP--GNTQDRARKARYEALCRCFGEQGADTFATAHHADDQAETLLMRFN 126

Query: 141 RDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           R     G+        +L         + RP L  RRE++   +    ++  +DPSN D 
Sbjct: 127 RGSGLSGLAGIRARTVLLSPEPLGEYLVVRPLLEWRREELAGIVADAGLAPVQDPSNVDT 186

Query: 198 RFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           R++RV+VRR + D   +D  A+    +  Q+    V  + A +  +       ++     
Sbjct: 187 RYDRVQVRRALADLPWLDPLAMARSARHLQEAEDAVRRSSADVYNRCTYREGETVWFHWG 246

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
               ++   +  +L    A            S+ R++  L S   G  S+G VV  R
Sbjct: 247 HARTVEIEAVRLILLEFGADV-------PRSSIARLIDQLMSEGAG--SLGGVVARR 294


>gi|289208652|ref|YP_003460718.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. K90mix]
 gi|288944283|gb|ADC71982.1| tRNA(Ile)-lysidine synthetase [Thioalkalivibrio sp. K90mix]
          Length = 418

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/405 (20%), Positives = 150/405 (37%), Gaps = 36/405 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +VR F++       + VA SGG DS  LL AL  +            A  V+H LR  
Sbjct: 9   MAAVRAFLQDHPGATSLRVAFSGGRDSSVLLHALAQLRPQ------GLEAWHVNHGLRPD 62

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A+ +  +   V   L +  +V +         G  AAAR ARY  + E        LI+T
Sbjct: 63  AEAQAAFCVRVAEALEVPLTVRNVIVLDDASEGPEAAARRARYTALREGLGER--DLILT 120

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ET  + + R    +G+        +  + + W+ RP L    E I  +    
Sbjct: 121 AQHADDQAETFLLAALRGSGPEGLQGM---RVLRREGDTWLGRPLLAVPGESIAGYARVA 177

Query: 185 NISWCEDPSNTDDRFERVRVRRFV--RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            + W  DPSN D RF+R  +RR +  R  +   +Y  + +    + +  + +A L  K+L
Sbjct: 178 ALDWYHDPSNDDTRFDRNFLRREIFPRLAERFPVYGSLARCARWQREAVDRLASLEDKHL 237

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSGKR 299
                  +A   ++      L     R+ A +    +  PG+  +E   R +    + + 
Sbjct: 238 PGEASLEVASLAEL-----DLPARRARLRAWLRAQGLRPPGHARLEEFCRQLEVHGADRN 292

Query: 300 GCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVW-DGRYQFQNLSDSLIQIGPQS 358
             +      +      ++              P +   W  G  +       +++     
Sbjct: 293 PELRWADGWMGVYRGTIY----AEAPDGKPAAPGDVMPWPPGHARLTLPDGRVLERAALE 348

Query: 359 YRKADVPSGIPPIIAQRALSSMPSKEGGKPL--------LAPFSR 395
               D    +     +R   ++ +  G +PL        + P++R
Sbjct: 349 ALGVDAQEALEVGF-RRGGETVVTPAGRRPLKKRLQERGVPPWAR 392


>gi|299771517|ref|YP_003733543.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. DR1]
 gi|298701605|gb|ADI92170.1| tRNA(Ile)-lysidine synthetase [Acinetobacter sp. DR1]
          Length = 418

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 113/273 (41%), Gaps = 17/273 (6%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L+  + +  + V++  +RL I   +   + +     L A AR+ARY    
Sbjct: 8   KIRAIYIDHQLQSQSAEWGKLVAEQATRLDIPFIIQKVQVTD--GNLEAQARQARYQAYR 65

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +H +      ++ AH   DQ ETV +R        G+       ++ Y +++ I RPFL 
Sbjct: 66  QHLQPN--ETLVLAHHQQDQAETVILRLLSGAGVDGLAAM---QSVDYRVDMTIWRPFLD 120

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             RE I  +  Q  I +  DP+N D  ++R   R  +    L   + KM++       + 
Sbjct: 121 LSREQIADWTTQLEIEYVNDPTNYDIHYDRAWSREELWP-FLQNRFPKMQQALSRTSYLM 179

Query: 232 NAVAMLIPKYLTVHMRSIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
              + ++ + L   ++            +L++       LL  S  + G     P +  +
Sbjct: 180 QDASEILEEVLKADLKHCGTAECLDLTKLLDLSVARQRQLL--SVWMKGDGQYRPAFEMV 237

Query: 288 ERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317
           ER+   ++  KS  +  +   +    R  + L+
Sbjct: 238 ERLKNEVIDSKSDAQAALHWNQFYYVRYQHHLY 270


>gi|313848263|emb|CBY17264.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|328914942|gb|AEB55775.1| MesJ/Ycf62 family protein, putative [Chlamydophila psittaci 6BC]
          Length = 297

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 95/246 (38%), Gaps = 19/246 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A+SGGSDS+ LL  L S         + F+A+ VD+  RE++  E   +   C    +
Sbjct: 6   LLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESSYREAEELKLRCQEEGV 58

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              V    +  K       AAR  RY L  +  +  N   I  AH  +DQ ETV  R   
Sbjct: 59  PLIVNHVPSKDKTSKDPENAARRYRYELFYKICREENLAGIFLAHHANDQAETVLKRVLE 118

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                   L GM     Y   + + RP L   ++ +   L   NI +  D +NTD+R+ R
Sbjct: 119 GAHLG--NLKGMTSEASY-NGIPLLRPLLHIPKQILIHTLDAENIPYVHDVTNTDERYLR 175

Query: 202 VRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
            R+R  +               L    +  ++L   +       +      H    I I 
Sbjct: 176 ARMRNKIFPWLEEIFGKNITQPLLTLAQDSEELSCYMKQQAQPFLENIRQEHTTWSIEIP 235

Query: 254 QDILNI 259
           + ++  
Sbjct: 236 KSLIEQ 241


>gi|86152849|ref|ZP_01071054.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85843734|gb|EAQ60944.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 321

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 108/282 (38%), Gaps = 24/282 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + +L+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  R      +      K Q+     AR+ RY    +     +   ++ AH 
Sbjct: 55  LEELKAKELALRFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ E   M+  R      +     C+      N  + RP L   +++I SFL +++I 
Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEK---RQNYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  D SN ++++ R  +R+   +  +   +  +K+          + + L      ++  
Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSKFHQGLKR----------SFSYLDEDRKKLYDF 219

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
             I   Q +L         L+  +  + G  +S    + + R
Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKELLR 259


>gi|57238476|ref|YP_179607.1| PP-loop family protein [Campylobacter jejuni RM1221]
 gi|61216392|sp|Q5HSX8|TILS_CAMJR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|57167280|gb|AAW36059.1| PP-loop family protein [Campylobacter jejuni RM1221]
 gi|284926661|gb|ADC29013.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315058908|gb|ADT73237.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 321

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 107/280 (38%), Gaps = 24/280 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + +L+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILALLKKGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  +      +      K Q+     AR+ RY    +     +   ++ AH 
Sbjct: 55  LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ E   M+  R      +     C+      N  + RP L   +++I SFL +++I 
Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEK---RQNYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  D SN ++++ R  +R+   +  +   +  +K+          + + L      ++  
Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             I   Q +L         L+  +  + G  +S    + +
Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257


>gi|291059764|gb|ADD72499.1| tRNA(Ile)-lysidine synthase [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 447

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 76/321 (23%), Positives = 121/321 (37%), Gaps = 38/321 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRLR 81
           LVAVSGG+DS+ LL A H +  D     +   A++VDH LR      + R+V  +C+R  
Sbjct: 2   LVAVSGGADSLALLYAAHELAPD---FGVCACAVTVDHSLRAQEGALDARFVRALCARFS 58

Query: 82  --IAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             +   V       V         G+  AAR  RY +    A    A +++TAHT DDQ 
Sbjct: 59  PPLPCFVQQISAGAVHACAKIRGRGVQDAARALRYKVFDHVAARCGAQVVLTAHTRDDQY 118

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ MR  +  A   +         +        RP L+  R  +  FL  R + W ED 
Sbjct: 119 ETLLMRLFQGAAASAL-------QGIRAARGRYVRPLLKVSRTCVEDFLQTRGVRWREDA 171

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SNT  ++ R R+R  +       L             ++   +  +            A 
Sbjct: 172 SNTCRKYVRNRIRHELIPALDAVLAGWRSGLDKTFAGISAEHSFCVAALTRWREGCSHAW 231

Query: 253 SQ--------------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
                           D L  +  L F+LL+ +    G    +P    +ER   F     
Sbjct: 232 EPVPRALGTRLRMPRSDFLAAEFILRFFLLQEACVRLGVSHRVPRGA-LERCARF---DG 287

Query: 299 RGCVSIGRVVIDRRANFLWIT 319
              + +  + ++R   ++  +
Sbjct: 288 VRRIHVSGLQLERAGAYVLFS 308


>gi|254302226|ref|ZP_04969584.1| PP loop family cell cycle protein MesJ [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148322418|gb|EDK87668.1| PP loop family cell cycle protein MesJ [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 448

 Score =  177 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +     F   K   + ++H LR E A  +  +  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKLQ---HFFNFKIYLVHINHLLRGEDADSDENFSFEYAKKN 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +    V     +    L    RE RY   SE  + + AT I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEIAKEIGKTLEEVGREERYKFFSEIYEKVRATKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R  + +G+         +   N  + RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIRGTSLQGL-------EGIKIKNNNVIRPISEIYKKDILEYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NEFTRNSIRLDLIPFIEERYNIKFK 217


>gi|255659245|ref|ZP_05404654.1| tRNA(Ile)-lysidine synthase [Mitsuokella multacida DSM 20544]
 gi|260848699|gb|EEX68706.1| tRNA(Ile)-lysidine synthase [Mitsuokella multacida DSM 20544]
          Length = 466

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/307 (22%), Positives = 111/307 (36%), Gaps = 25/307 (8%)

Query: 7   ESVRFF-VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63
           E+VR+   + L++P  H+LVA SGG DS+     L  +L  R   ++  +    +H +R 
Sbjct: 4   EAVRYARAQDLLHPGMHVLVACSGGPDSL---ALLDMLLQLRRRFRLVLTVAHYEHGIRG 60

Query: 64  ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++ ++ R+V   C    +   +    V          +  AARE RY  + +  +   A
Sbjct: 61  ASSAEDARFVDAFCREREVPCFIGHGDVPAFAKAQGKSVELAARELRYVFLWQTLERCGA 120

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            ++ TAH  DDQ ETV MR  R     G+                  RP L  RREDI  
Sbjct: 121 DVLATAHHADDQAETVLMRILRGTGLDGLAAM-------KPREGKKIRPLLFARREDILD 173

Query: 180 FLLQRNISWCEDPSNTDDRFERV--------RVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
           +  +R ++   D +N      R          +R+       HAL    +  +     + 
Sbjct: 174 YCRERGLTPRHDATNDIPNCTRNLLRLKVLPYLRQSCNPEVAHALCQLAELARVDCDYLE 233

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
             +    P            +          L    LR       G      +  +E + 
Sbjct: 234 QQLEESWPYLTREEDGRCSIVLTTFQRRHPALQRRALRRLYTGIAGMGRDLSFSHVEELR 293

Query: 292 LFLKSGK 298
           L   SG+
Sbjct: 294 LLALSGQ 300


>gi|86149480|ref|ZP_01067711.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88596817|ref|ZP_01100054.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218563056|ref|YP_002344835.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|61216748|sp|Q9PMK7|TILS_CAMJE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|85840262|gb|EAQ57520.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88191658|gb|EAQ95630.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360762|emb|CAL35561.1| putative tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315930835|gb|EFV09827.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           305]
          Length = 321

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + SL+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILSLLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  +      +      K Q+     AR+ RY    +         ++ AH 
Sbjct: 55  LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ E   M+  R      +     C+      N  + RP L   +++I SFL +++I 
Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  D SN ++++ R  +R+   +  +   +  +K+          + + L      ++  
Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             I   Q +L         L+  +  + G  +S    + +
Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257


>gi|124021791|ref|YP_001016098.1| ATPase [Prochlorococcus marinus str. MIT 9303]
 gi|123962077|gb|ABM76833.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9303]
          Length = 343

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/298 (23%), Positives = 110/298 (36%), Gaps = 20/298 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A +L+AVSGG DSM LL  L  +     +          DH   + +      + D
Sbjct: 29  LPAEASLLIAVSGGQDSMALLGLLIDLQRKHGW---SLEVWHGDHNWHQQSATIATELKD 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT-------INATLIMTAHTF 128
            C    ++    S +    QT   A AR  RY  ++ H +             ++T HT 
Sbjct: 86  WCEAHNLSF--WSDQAKPGQTNNEATARHWRYEQLTLHTERLSSNNPNHPCRYVLTGHTS 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRN 185
            D+ ET+ +   R     G+     C  I  D    N+ + RP L   RED      + +
Sbjct: 144 SDRAETLLLNLARGADLAGLSSMRQCRPISKDNPRKNVQLIRPLLGFSREDTAQICSELS 203

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK---YL 242
           +    DP+N++  F R RVR+ V  +          +   L  ++N+  A         L
Sbjct: 204 LPIWLDPANSNPDFSRNRVRQEVLPVLESLHPGCSLRIAALAERLNHHHADQQAIAMLAL 263

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
               +      QD+  +  T    LL        G  SLP    +E++   +  GK  
Sbjct: 264 NNLSKQNGLCRQDLAQLPITARTTLLAYWLKR-SGAPSLPA-VQLEQISQSIGPGKPP 319


>gi|15834848|ref|NP_296607.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg]
 gi|270285014|ref|ZP_06194408.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg]
 gi|301336412|ref|ZP_07224614.1| tRNA(Ile)-lysidine synthase [Chlamydia muridarum MopnTet14]
 gi|61216745|sp|Q9PL79|TILS_CHLMU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|7190268|gb|AAF39100.1| MesJ/Ycf62 family protein [Chlamydia muridarum Nigg]
          Length = 321

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 20/262 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  F  SL      L+A+SGGSDS+ L+  L S         I F+A+ VD+  RET+
Sbjct: 10  KQLEVFFSSLDKKKKYLLALSGGSDSLLLMYLLRS-------RGISFTAVHVDYGWRETS 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMT 124
             E   ++ +C R +I   +   + + P   + +   AR+ RY L     K      +  
Sbjct: 63  YQEACDLASLCEREQIPFILDRQEVANPMDFSDIENIARQYRYELFYRLCKERLFAGVFL 122

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DDQ ET+  R           L GM     Y   + + RP L   +  I   L   
Sbjct: 123 GHHADDQAETILKRVFEGAHLG--NLKGMARYGTY-KGITLLRPLLHITKRQIVEALDNY 179

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236
            I + +D +N D+RF R R+R  +               L    +   +LR  ++   A 
Sbjct: 180 RIEYVQDATNADERFLRARMREQLFPYLQEIFGKNIRQPLLFLAEDSAELREYLDQQAAP 239

Query: 237 LIPKYLTVHMRSIIAISQDILN 258
            + + +   +   + + Q++L 
Sbjct: 240 FLSQVIDNEIGQFLPVGQELLQ 261


>gi|213156069|ref|YP_002318114.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB0057]
 gi|215484603|ref|YP_002326838.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB307-0294]
 gi|213055229|gb|ACJ40131.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB0057]
 gi|213986972|gb|ACJ57271.1| tRNA(Ile)-lysidine synthase [Acinetobacter baumannii AB307-0294]
          Length = 424

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 120/290 (41%), Gaps = 19/290 (6%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL  +  +   +        AI +DH L++ + +    V+   + L I + +   + +
Sbjct: 1   MLLLHLMAQIFPQK------IRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQIA 54

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
                L A AR+ARY    +H +     +++ AH   DQ ETV +R        G+    
Sbjct: 55  N--GNLEAQARQARYQAYQQHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAAMQ 110

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             D   Y  ++ I RPFL   RE I  +  Q  + + +DP N D+ ++RV  R  +    
Sbjct: 111 AID---YRKDMTIWRPFLDLTREQIALWTAQLEVKYIDDPMNYDNHYDRVWCREALWP-F 166

Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR--V 270
           L + + KM++       +    + ++ + L    +   +     L   S L F   R  +
Sbjct: 167 LTSRFPKMQQALSRTSYLMQDASEILEEVLKDDWQYSGSADYLDLTKLSELSFARQRQLL 226

Query: 271 SAAICGGQISLPGYRSMERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317
           SA + G     P +  +ER+   ++  KS  +  +   +    R  N L+
Sbjct: 227 SAWMKGQGQYRPAFEMVERLRAEVIESKSDAQAALHWNQFYYVRYQNILY 276


>gi|313902544|ref|ZP_07835945.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM
           13965]
 gi|313467230|gb|EFR62743.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter subterraneus DSM
           13965]
          Length = 632

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 98/278 (35%), Gaps = 17/278 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L     +LVAVSGG DSM LL  L  +               VDH LR  +  + R+V
Sbjct: 31  RLLEAGQRVLVAVSGGRDSMVLLDVLDRLRPVLGLAA--LGVAHVDHGLRPDSAGDARWV 88

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +  +   +            +  L   AR ARY  ++  A+   A  +  AH   DQ E
Sbjct: 89  EEQAAARGLPFLCRRVHIRPGRRSLEEGARLARYRALAAMARQFGAQRVALAHHAGDQAE 148

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV MR       +G+                  RP L      + ++   R + W +DPS
Sbjct: 149 TVLMRLLAGAGVRGLAGMPW-------RRGPFVRPLLATEPALLAAYAAARGLGWRDDPS 201

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D  F R R+R  +  +      L+ +    +   +    A+L  +   +  R+     
Sbjct: 202 NQDLTFLRNRIRHRLLPL------LEAEFNPRVVTALGRVAAVLAAEGALLRRRTRRLEG 255

Query: 254 QDILNIDSTLLFYL--LRVSAAICGGQISLPGYRSMER 289
           +    +       +  L         ++    Y  + R
Sbjct: 256 RLGYRLGPRWACRVDDLARLPVADQRRLLQAAYHRLAR 293


>gi|311897755|dbj|BAJ30163.1| putative tRNA(Ile)-lysidine synthase [Kitasatospora setae KM-6054]
          Length = 375

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 92/228 (40%), Gaps = 10/228 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG+DSM L  A            ++  A++VDH L++ + +    V+     L 
Sbjct: 77  VLVAVSGGADSMALATATAFEAPKLG---LRVGAVTVDHGLQDGSAERAEQVAVRLRELG 133

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +            + G   AAR+ARYA +   A+   A  ++  HT DDQ ETV +   R
Sbjct: 134 LDPVEAVAVRVGREGGPENAARDARYAALDLAAERHGALAVLLGHTRDDQAETVLLGLAR 193

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               + +                  RP L   R   R     ++I   +DP NTD  + R
Sbjct: 194 GSGARSLAGMPAQK-------GRYRRPLLELDRAATRQACSAQSIPVWDDPHNTDPAYTR 246

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            RVR  V  +    L   + +      ++    A  + ++  +  R +
Sbjct: 247 SRVRHEVLPVLEKHLGGGVVEALARTARLFRDDADALDQWAALAERDL 294


>gi|62185345|ref|YP_220130.1| hypothetical protein CAB732 [Chlamydophila abortus S26/3]
 gi|81312504|sp|Q5L5B2|TILS_CHLAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|62148412|emb|CAH64179.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 317

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 19/262 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  F  +L      L+A+SGGSDS+ LL  L S         + F+A+ VD+  RE++
Sbjct: 10  KRLEVFFSALDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFTAVHVDYGWRESS 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             E   +   C    +   V    +           AR  RYAL  +  +  N   I  A
Sbjct: 63  YREAEELKLRCQEEGVPLIVDHVPSKYTTSKDPENTARRYRYALFCKICREDNLAGIFLA 122

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +DQ ETV  R     +     L GM     Y+  + + RP L   ++ +   L   N
Sbjct: 123 HHANDQAETVLKRVLEGASLG--NLKGMTSGASYNR-IPLLRPLLHIPKQVLMQTLDAEN 179

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAML 237
           I++  D +NTD+R+ R R+R  +               L    +  ++L   +       
Sbjct: 180 IAYVHDVTNTDERYLRARMRNKIFPWLEEIFAKNITQPLLTLAQDSEELSCYMKQQAQPF 239

Query: 238 IPKYLTVHMRSIIAISQDILNI 259
           +      H    I I + ++  
Sbjct: 240 LENIRQEHTTWSIEIPKPLIEQ 261


>gi|217976965|ref|YP_002361112.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2]
 gi|217502341|gb|ACK49750.1| tRNA(Ile)-lysidine synthetase [Methylocella silvestris BL2]
          Length = 377

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 71/310 (22%), Positives = 120/310 (38%), Gaps = 15/310 (4%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK---FSAISVDHCLRETAKD 68
            +R       IL+AVSGG DS+ L++        R    +        +VDH LR  +  
Sbjct: 41  LLRPWEEAQKILLAVSGGPDSIALMLLASRWARAREERGLAAPLLHVSTVDHGLRTGSGA 100

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           E   V+       + H  + W   KP+T +   AREARY L+   A  + A +I TAH  
Sbjct: 101 EAEAVAAWAKAAGLPHETLIWNGGKPKTRIQERAREARYDLLCACAARLGADVIATAHHA 160

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ET+  R  R     G+          +   L  SRP L C +  + ++   R   +
Sbjct: 161 DDQAETILFRLTRGSGPGGLAGM---SARFFRHGLIHSRPLLSCDKAALIAYCEARRHDF 217

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
             DPSN +  F R R+R  ++ +    L     L++ +      +   A A  +   +T+
Sbjct: 218 FADPSNCNPAFARTRMRALLKLLADEGLDRAALLRLGRRAARAEEALAARARAVAADVTL 277

Query: 245 HMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----GKR 299
                  I    +      +L  ++         +        +E + + L+     G+ 
Sbjct: 278 QSGGGAVIDMAQLAREPQEILIRVVAAQILEASAKSGPLRLERLETLAISLRQACLDGRP 337

Query: 300 GCVSIGRVVI 309
              ++G   +
Sbjct: 338 YAATLGGAAL 347


>gi|241956978|ref|XP_002421209.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36]
 gi|223644552|emb|CAX41370.1| tRNA(Ile)-lysidine synthase, putative [Candida dubliniensis CD36]
          Length = 479

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 137/394 (34%), Gaps = 69/394 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + VA+SGG DSM L   L            +  AI++DH  R  +  E   V +   
Sbjct: 21  PKKVAVALSGGPDSMLLTWLLSQCQ-------FEIYAITIDHKYRTESSREALAVHERVK 73

Query: 79  RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              + H + S       +          ARE RY  +++        ++   H  DDQLE
Sbjct: 74  NWNLNHIIKSLDYPAGVDPTKLNNFEEVAREKRYEAMAQVCYEKEIPVLFLGHHRDDQLE 133

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNL-------------WISRPFLRCRREDIRSF 180
           T   R Q + +  G+  +     +    +L              I RPF    ++DI   
Sbjct: 134 TFIQRLQGNSSIFGLAGTHKVSPLPISRDLSPESTLFNQASQVRILRPFWDYDKQDILET 193

Query: 181 LLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA--------LYLKMKKFQDLRVKVN 231
               NI++  DP+N D     R  +R  + D+            L ++  +  D   K  
Sbjct: 194 CQLNNIAYVTDPTNKDVSLTRRNYLRHLINDVIPAKNNQSRSPYLLIRKSELIDSHRKCL 253

Query: 232 NAVAMLIPKYLT----VHMRSIIAISQDI----LNIDSTLL---------FYLLRVSAAI 274
               ML  K +     +    +I     +    + +    L          +L R+    
Sbjct: 254 EFATMLENKAMALSNSLQRNGLIREYPGLGSLWVKLPRQCLDHTNGIVTSRFLYRILHPY 313

Query: 275 CGGQISLPGYRSMERVML-----FLKSGKRGCVSIG--RVVIDRRANF------LWITR- 320
              +     Y  +ER ++     FL  G+ G   +    +V +   N       + I R 
Sbjct: 314 STLKHYHWAYAKLERQLIPRITSFLDQGESGTFKLTMMNLVFEVTNNTSSEYVPIHIYRC 373

Query: 321 --AVRNLPTL--ILYPEETTVWDGRYQFQNLSDS 350
               ++ P +  +L   E  ++D R+  +  S++
Sbjct: 374 PITTKDWPAVQEVLTMGEWKLFDSRFWLRATSNT 407


>gi|283955056|ref|ZP_06372559.1| hypothetical protein C414_000390011 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793423|gb|EFC32189.1| hypothetical protein C414_000390011 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 321

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 12/215 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + SL+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILSLLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  +      +      K Q+     AR+ RY    +     +   ++ AH 
Sbjct: 55  LEELKAKELALKFHKKIFIK--YAPKFQSNFEKKARDFRYDFFEKICFEQDYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ E   M+  R      +     C+      N  + RP L   +++I SFL +++I 
Sbjct: 113 LNDQFEWFLMQLSRGSGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           +  D SN ++++ R  +R+   +  +   +  +K+
Sbjct: 170 YFHDESNENEKYFRNYIRKKFSNAFVSEFHQGLKR 204


>gi|170078528|ref|YP_001735166.1| metallothionein [Synechococcus sp. PCC 7002]
 gi|169886197|gb|ACA99910.1| metallothionein [Synechococcus sp. PCC 7002]
          Length = 342

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 124/320 (38%), Gaps = 16/320 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A +++AVSGG DS+ L   +  +       +   +     H      ++   +V  
Sbjct: 20  LPAGAKLIMAVSGGQDSVCLSRLMLDLQ---RHWQWSLAIAHCHHGW-PGDEEIAAHVQT 75

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + ++ ++   +    +S P+T    AAR  RY  ++  A+ ++   ++T HT  D+ ET+
Sbjct: 76  LGAQWQLPFYLCRAVSSLPET--ENAARRWRYETLTHLAEQLDQAYVVTGHTQSDRAETL 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R     G+G   + +       + + RP L   R++   F  Q N+  C DP N 
Sbjct: 134 IYNLVRGAGTAGLGS--LTERRSLSNKVKLVRPLLTITRQETGEFCRQFNLLVCFDPFNQ 191

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV---NNAVAMLIPKYLTVHMRSIIAI 252
             RF+R ++R+ +            K      + +   N+ +  +  +YL   +     +
Sbjct: 192 QMRFKRNQIRQQILPHLRTLNTQADKHLAQTALILQDENDYLEAIAQQYLQQALTPQQHL 251

Query: 253 SQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--SGKRGCVSIGRVVI 309
            + +L  +   L   ++R           +P +  +   +  +   +G R     G++ +
Sbjct: 252 HRLVLQPLHIALQRRIIRQYLQQV--LPKMPTFAQISATVELIHGCNGDRLSTLPGKIQL 309

Query: 310 DRRANFLWITRAVRNLPTLI 329
                +L       NLP   
Sbjct: 310 QVMGEWLVPEALKSNLPKST 329


>gi|238882936|gb|EEQ46574.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 483

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 125/353 (35%), Gaps = 60/353 (16%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F   ++  R F  +   P  + VA+SGG DSM L   L          K +  AI++DH
Sbjct: 7   LFRKSLD--RLF--NGNAPKKVAVALSGGPDSMLLTWLLSQC-------KFEIYAITIDH 55

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAK 115
             R  A  E   V +      + H + S       +          ARE RY  +++   
Sbjct: 56  KYRPEASREALSVYERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEIAREKRYEAMAQVCY 115

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-------------YDLN 162
             +  ++   H  DDQLET   R Q + +  G+  +     +                  
Sbjct: 116 DKDIPVLFLGHHRDDQLETFIQRLQGNSSIFGLAGTHKVSPLPISKDLSPTSTFFNQANQ 175

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDL------HA 215
           + I RPF    ++DI       NI++  DP+N D     R  +R  + DI        H+
Sbjct: 176 VRILRPFWDYDKQDILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDIIPAKNNQSHS 235

Query: 216 LYLKMKKFQ--DLRVKVNNAVAMLIPKYLTVHM---------------RSIIAISQDILN 258
            YL + K Q  D   K      M   + + +                    +   +  L+
Sbjct: 236 PYLLIDKSQLIDSHTKCLEFATMFENRAMALSESLQSSGLIKEFPALGSLQVKFPRQCLD 295

Query: 259 IDSTL--LFYLLRVSAAICGGQISLPGYRSMERVML-----FLKSGKRGCVSI 304
             + +    +L R+       +     Y  +ER ++     FL+ G+ G   +
Sbjct: 296 QTNGIVTSRFLYRILHPYSTLKHYHWAYAKLERQLIPRITKFLEQGQSGTFKL 348


>gi|289548617|ref|YP_003473605.1| tRNA(Ile)-lysidine synthetase [Thermocrinis albus DSM 14484]
 gi|289182234|gb|ADC89478.1| tRNA(Ile)-lysidine synthetase [Thermocrinis albus DSM 14484]
          Length = 298

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/305 (21%), Positives = 126/305 (41%), Gaps = 26/305 (8%)

Query: 3   LSPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISV 58
           +S +  V F  R L      + +LVA SGG+DS+     + ++L  + F    +   + V
Sbjct: 1   MSLLRKVVFLQRKLQLIPPGSSLLVAFSGGADSV---ALVLALLELKGFIGWKRILLMHV 57

Query: 59  DHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEH 113
           +H +R   A+ +  +  +   R ++   V          K +  L + ARE RY L+ E 
Sbjct: 58  NHMIRGGEAERDELFCREFAQRHQLPLLVERIDIPSIAEKKKENLESIAREERYRLLREV 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                  LI+TAH  +D +ETV +   R    +G+           +    + RP    +
Sbjct: 118 KDREGLDLIVTAHHLNDLVETVLLWLVRGCGTEGL-------MGFDEREGDVVRPLFLVK 170

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           +E+I +F+  +  SW ED +N D  + R R+R  V    +  L      F++  +++   
Sbjct: 171 KEEIVAFVKGKGESWVEDSTNMDVGYARNRIRHRV----IPELKKINPSFEENFLRLRAL 226

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           +             ++  + Q+       L   L R       G  +   +R +E+++  
Sbjct: 227 LKDEDSYLREKTKEALALVQQEGRKAFLKLHPALQRRVVMEIYGVRN---FRLVEQIINS 283

Query: 294 LKSGK 298
           +K G+
Sbjct: 284 IKKGE 288


>gi|123969392|ref|YP_001010250.1| ATPase [Prochlorococcus marinus str. AS9601]
 gi|123199502|gb|ABM71143.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. AS9601]
          Length = 336

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/253 (25%), Positives = 105/253 (41%), Gaps = 18/253 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +   ++IL++VSGG DSM LL  ++ +   +       S    DH   E +      + D
Sbjct: 29  IPKGSNILISVSGGQDSMALLTLINDL---KKLHNWSISVWHGDHQWHEKSSLYALELKD 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128
            C    I+ S    + +K        ARE RY  + E AK         +   ++T HT 
Sbjct: 86  YCEDKNISFSFD--QANKEDISSEEKAREWRYKKLCERAKTLLSTNQEKHNIYLLTGHTS 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D  ET  +   R       GLS +    L +  +++ RP L   RED + F  +  I  
Sbjct: 144 SDNAETFILNLSRGS--NFAGLSNIESKRLIENQIYLIRPILIFSREDTKQFCNEMKIPV 201

Query: 189 CEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            EDP+N+D + +R  VR+ +  I          ++  F     K NN    L  +    +
Sbjct: 202 WEDPTNSDLKLKRNLVRKKIIPILEVIYPGCSERINNFSQKMSKYNNERNDL-SELAYFY 260

Query: 246 MRSIIAISQDILN 258
            + I  I +++LN
Sbjct: 261 CKDIKGIDRNLLN 273


>gi|317052478|ref|YP_004113594.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5]
 gi|316947562|gb|ADU67038.1| tRNA(Ile)-lysidine synthetase [Desulfurispirillum indicum S5]
          Length = 442

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/281 (23%), Positives = 101/281 (35%), Gaps = 38/281 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           +VAVSGG DSM LL  L  +  +    K+      ++H LR E ++ + R V   C RL 
Sbjct: 26  VVAVSGGVDSMVLLHLLAKIQPEL---KLNLVVAHLEHGLRGEESRADARLVIQTCERLG 82

Query: 82  IAHSVVSWKN---SKPQTGLMAAAREARYALISEHAKTI---NATLIMTAHTFDDQLETV 135
           I             +        AR  RY    +         A  I TA T DD LE +
Sbjct: 83  IPCYARFVDEHFWQRQAGNFQDKARALRYTFFRQVGTDFFSGRAFAIATAMTQDDCLEKI 142

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +M   R  +  G       DT          RP     +E + ++   + ISW ED SN 
Sbjct: 143 FMDILRGRSLLGSLSHQQPDT---------LRPLRTISKEALIAYATGQQISWREDTSNH 193

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
            D + R RVR  +  +                    +    +  +++T     +  +S+ 
Sbjct: 194 QDSYLRNRVRNQLIPLLREEF---------------DFQKSIQSRFITDMEEGMTFLSEQ 238

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
           +      L   LLR  +        L  +   +  + FL+ 
Sbjct: 239 L----DALFASLLREGSLRVSDLRQLASFPQRQICLRFLQH 275


>gi|83319710|ref|YP_424013.1| hypothetical protein MCAP_0014 [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283596|gb|ABC01528.1| conserved hypothetical protein [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 401

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 123/257 (47%), Gaps = 16/257 (6%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++      L+A+SGG DS+ LL  +  ++  ++          V++  R  + ++ + V 
Sbjct: 5   NIDTNKKYLLAISGGPDSVFLLCNIVKIIDSKN-----LVVCHVNYNFRSDSINDQKIVI 59

Query: 75  DVCSRLRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           ++C +  +   +++        +    + AR  RY   ++ AK      ++ AH F+D +
Sbjct: 60  NLCKKFDLKLEILNINKDYSLLKENFESWARFQRYDFFNKIAKKYQIYNLLVAHNFNDLI 119

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  ++ QR+      GL     T+ +  +L + RP L  ++ +I  +L    IS+  D 
Sbjct: 120 ETYLLQLQRNNLVDYYGL----KTVSHYKDLVVYRPLLDIKKSEILDYLKTNQISYAIDS 175

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIA 251
           +NTD +++R ++R     I   ++++ +K   D+  K    +  ++  YL  ++    + 
Sbjct: 176 TNTDIKYQRNKIR----SIIDESIFIDIKNQIDIDNKKLETIKKIVNNYLEHNLTNKELI 231

Query: 252 ISQDILNIDSTLLFYLL 268
           +++++  ++S ++  ++
Sbjct: 232 LNKELFLLESNIIKRII 248


>gi|188584569|ref|YP_001928014.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001]
 gi|179348067|gb|ACB83479.1| tRNA(Ile)-lysidine synthetase [Methylobacterium populi BJ001]
          Length = 342

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 127/299 (42%), Gaps = 13/299 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DS  L+ A          G+      +VDH LR  + +E   V  + +RL +
Sbjct: 28  LLAVSGGPDSTALMHAAAR------SGRAGLRVATVDHALRPDSAEEAAEVGRLAARLGL 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H+ ++W   +  + + A AR ARY L+++HA  I A L++TAHT DDQ ETV MR    
Sbjct: 82  PHATLTWDVPRRGSRIQAEARAARYQLLADHAARIGAGLVLTAHTLDDQAETVLMRLIAG 141

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL+GM         + + RPFL   + D+ ++     + +  DPSN D+RF R 
Sbjct: 142 SGP--SGLAGMPVERPLAPGIRLVRPFLDLPKADLVAYCEAHRLPFLRDPSNADERFARS 199

Query: 203 RVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R+RR +       +    L     +       +    A+++ +        +    + + 
Sbjct: 200 RLRRLLPLLAEEGLSAARLGRLAARTARDDAALTQRAAIVLSEISEPDGDRLRLDGRRLY 259

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
                ++  +L  +        + P    +ER+           ++ GR +       L
Sbjct: 260 REPEAIVLRVLGTALDRIVSGFAEPVPERLERLEALAFEALLPALAEGRALRRTLRGVL 318


>gi|119714705|ref|YP_921670.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614]
 gi|119535366|gb|ABL79983.1| tRNA(Ile)-lysidine synthetase [Nocardioides sp. JS614]
          Length = 321

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 112/267 (41%), Gaps = 16/267 (5%)

Query: 1   MFLSP-IESVRFFVRSLV----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           M L P I +VR  VR  +        ++VA SGG+DS+ LL A  +V   R  G  +   
Sbjct: 1   MSLHPAIAAVRLAVRRALAHVDPGRTVVVACSGGADSLALLAA--TVFEGRRAG-WRVVG 57

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV-SWKNSKPQTGLMAAAREARYALISEHA 114
            +VDH L+  + D   +V    + L    +V  +        G  AAAR+ARYA++ + A
Sbjct: 58  ATVDHGLQPGSADHAAHVVRQMAALGADETVAATVHVEAAGQGPEAAARQARYAVLDQLA 117

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +A  ++  HT DDQ ETV +   R     G  L+GM  +          RP L   R
Sbjct: 118 ERFDADAVLLGHTRDDQAETVLLGLARGSG--GRSLAGMRRSF-----DRFVRPLLDLSR 170

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            D  +      I +  DP N D  F RVRVRR V  +    L   + +          A 
Sbjct: 171 ADTATACQVAGIEFWSDPHNEDPAFTRVRVRRSVLPVLEDQLGPGVAEALARTADQLRAD 230

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDS 261
             L+        + +  +  D L  + 
Sbjct: 231 MDLLDDAAEAAYQRLRDLPVDGLLAEP 257


>gi|220909149|ref|YP_002484460.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7425]
 gi|219865760|gb|ACL46099.1| tRNA(Ile)-lysidine synthetase [Cyanothece sp. PCC 7425]
          Length = 336

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 122/314 (38%), Gaps = 18/314 (5%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L  P   +LVAVSGG DS+     +  +L  R     + +    DH  R  +     +
Sbjct: 27  RHLFTPGQRLLVAVSGGQDSL---CLIKLLLDLRPHWHWELAIGHCDHRWRSDSAANAAH 83

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V  +  + ++    +      P+T   A +R  RY +++E A+T N T ++T HT  D+ 
Sbjct: 84  VQTLAEQWQLPFW-LQIAAEIPRT--EAQSRTWRYEVLTEIAQTQNYTAVVTGHTASDRA 140

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+     R     G  L  +        ++ + RP L   R     F  ++N+   ED 
Sbjct: 141 ETLLFNLLRGSGTDG--LQALVWQRSLATDIQLVRPLLGLTRTQTGDFCREQNLPIWEDS 198

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKF-QDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           +N D ++ R R+R+ +          ++++        +   V  L  +   +  +    
Sbjct: 199 TNQDYQYRRNRIRQELIPYLQTHFNPQVEQAIAQTAELLQAEVDYLEAQAQALLAQVSTM 258

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQ-----ISLPGYRSMERVMLFLKSGKRGCV--SI 304
           + +  LN  S L    L +   +  G         P +  +E+V+  + +          
Sbjct: 259 LPERGLNRSS-LQAVPLALQRRVVKGFLQTHLPHAPNFDQVEKVVALITAANGSRTDPFP 317

Query: 305 GRVVIDRRANFLWI 318
           G  +      ++++
Sbjct: 318 GGAIATVSDAWIYL 331


>gi|33862207|ref|NP_893768.1| hypothetical protein PMM1651 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|61216598|sp|Q7UZL1|TILS_PROMP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33634425|emb|CAE20110.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 336

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 107/252 (42%), Gaps = 16/252 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +   A++L+AVSGG DSM LL  ++ + +  ++     +    DH   + +      +  
Sbjct: 29  IPDGANLLIAVSGGQDSMALLNLINDMKTQHNWF---VNVWHGDHQWHKKSAKYALELKS 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTF 128
            C++  I+      + +K        AR+ RY  +SE A  +           ++T HT 
Sbjct: 86  YCNKKNISFFFD--QANKNNISSEEKARDWRYKKLSERANQLLIENQKEIDIYLLTGHTN 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D  ET  +   R       GLS +    L   ++++ RP L   RED + F   +NI  
Sbjct: 144 TDNAETFLLNLARGS--NYAGLSNINKKRLLKHHIFLIRPLLIFSREDTKKFCQLQNIPI 201

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHM 246
            EDP+N D   +R  VR+ +  I         K+      K++N       + K  +++ 
Sbjct: 202 WEDPTNCDLTIKRNIVRKEIIPILETMYPGCSKRINSFAEKMSNYKNEQNDLSKLASLYC 261

Query: 247 RSIIAISQDILN 258
              I + +++LN
Sbjct: 262 EDAIGVKRELLN 273


>gi|29840521|ref|NP_829627.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC]
 gi|61216617|sp|Q822B9|TILS_CHLCV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29834870|gb|AAP05505.1| MesJ/Ycf62 family protein [Chlamydophila caviae GPIC]
          Length = 317

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 103/260 (39%), Gaps = 19/260 (7%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +  F  SL      L+A+SGGSDS+ LL  L S         + F+A+ VDH  RE++  
Sbjct: 12  LEVFFSSLDMKKSYLLALSGGSDSLFLLYLLKS-------RGVAFTAVHVDHGWRESSYR 64

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           E   +   C    I   +       +       AAR  RY L  +  K  N   I  AH 
Sbjct: 65  EAEELKIRCEEEGIPILIDHVPPEYRTSRDPENAARRYRYTLFHKVCKEQNLAGIFLAHH 124

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ ETV  R     +     L GM     Y+ ++ + RP L   ++ I + L   N+ 
Sbjct: 125 ANDQAETVLKRLLEGASL--SNLKGMSPKTSYE-DIPLFRPLLHIPKQIIINVLDAENVP 181

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIP 239
             +D +NTD+R+ R R+R+ +               L    +  ++L   +       + 
Sbjct: 182 CVQDITNTDERYLRARMRKKIFPWLEEIFGKNITQPLLTLAQDSEELSCYMKQQAEPFLE 241

Query: 240 KYLTVHMRSIIAISQDILNI 259
                +    I I Q ++  
Sbjct: 242 NMRKENTTWSIEIPQVLIEQ 261


>gi|307748319|gb|ADN91589.1| tRNA(Ile)-lysidine synthase [Campylobacter jejuni subsp. jejuni M1]
 gi|315930961|gb|EFV09936.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           327]
          Length = 321

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + +L+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  +      +      K Q+     AR+ RY    +         ++ AH 
Sbjct: 55  LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ E   M+  R      +     C+      N  + RP L   +++I SFL +++I 
Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  D SN ++++ R  +R+   +  +   +  +K+          + + L      ++  
Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDKDRKKLYDF 219

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             I   Q +L         L+  +  + G  +S    + +
Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257


>gi|21909546|ref|NP_663814.1| putative cell-cycle protein [Streptococcus pyogenes MGAS315]
 gi|21903726|gb|AAM78617.1| putative cell-cycle protein [Streptococcus pyogenes MGAS315]
          Length = 395

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 103/269 (38%), Gaps = 24/269 (8%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL  L+         KI+     V+H  R  +  E  Y+     +  I   V +++  
Sbjct: 1   MNLLHFLYLFQDKL---KIRIGIAHVNHKQRSESDSEEAYLKCWAKKHDIPIYVSNFEGI 57

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
                   AAR+ RYA         N + ++TAH  DDQ ET+ MR  R    +   LSG
Sbjct: 58  FS----EKAARDWRYAFFKSIMLKNNYSALVTAHHSDDQAETILMRLIRGSRLR--HLSG 111

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +     +  N  + RPFL   ++D+        I   ED SN +  F R RVR       
Sbjct: 112 IKSVQPFA-NGQLIRPFLTFSKKDLPE------IFHFEDSSNRELSFLRNRVRNN----Y 160

Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272
           L  L  +  +F     ++    ++L   +  +          +      ++ ++LL+   
Sbjct: 161 LPLLKQENPRFIQGLNQLALENSLLFQAFKELTNHITTTDLTEFNEQSKSIQYFLLQ--- 217

Query: 273 AICGGQISL-PGYRSMERVMLFLKSGKRG 300
               G   L        +++  +++ K+G
Sbjct: 218 DYLEGFPDLDLKKSQFTQLLQIIQTAKQG 246


>gi|121613548|ref|YP_001001102.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|148925625|ref|ZP_01809313.1| hypothetical protein Cj8486_1491c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157415678|ref|YP_001482934.1| hypothetical protein C8J_1359 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167005997|ref|ZP_02271755.1| hypothetical protein Cjejjejuni_07600 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249823|gb|EAQ72782.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|145845635|gb|EDK22726.1| hypothetical protein Cj8486_1491c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|157386642|gb|ABV52957.1| hypothetical protein C8J_1359 [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 321

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + +L+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  +      +      K Q+     AR+ RY    +         ++ AH 
Sbjct: 55  LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ E   M+  R      +     C+      N  + RP L   +++I SFL +++I 
Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  D SN ++++ R  +R+   +  +   +  +K+          + + L      ++  
Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             I   Q +L         L+  +  + G  +S    + +
Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257


>gi|153951323|ref|YP_001398742.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938769|gb|ABS43510.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 321

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 16/217 (7%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + SL+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILSLLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  +      +      + Q+     AR+ RY    +     +   ++ AH 
Sbjct: 55  LEELKAKELALKFHKKIFIK--YAPEFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRN 185
            +DQ E   M+  R     G GL+ +     Y+   N  + RP L   +++I SFL +++
Sbjct: 113 LNDQFEWFLMQLSR-----GAGLAEILGMQEYEQRSNYTLLRPLLFISKDEISSFLKEKD 167

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           I +  D SN ++++ R  +R+   +  +   +  +K+
Sbjct: 168 IFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR 204


>gi|255530408|ref|YP_003090780.1| tRNA(Ile)-lysidine synthetase [Pedobacter heparinus DSM 2366]
 gi|255343392|gb|ACU02718.1| tRNA(Ile)-lysidine synthetase [Pedobacter heparinus DSM 2366]
          Length = 465

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 125/342 (36%), Gaps = 41/342 (11%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVR 71
            +L  P   IL+AVSGG DS+ +                 F     +  LR   ++ +  
Sbjct: 14  HALFQPGDKILLAVSGGKDSVLMAHLFK-------LSGFNFGIAHCNFNLRGAESQRDEA 66

Query: 72  YVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +V  + + + +   +V +      ++ +     AAR  RY    E         I  A  
Sbjct: 67  FVKMLAASMDVPFHLVHFHTKAYAARHKVSTQMAARTLRYQWFEEVRLAQGYKAIALAQH 126

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +D +ETV +   R     G G++GM   +      W+ RP L     DI + +    + 
Sbjct: 127 QNDAIETVLLNLVR-----GTGIAGMHGILPKR--GWLIRPLLFLSGGDIAALVKSFELD 179

Query: 188 WCEDPSNTDDRFERVRVRRFV------RDIDLHALYL-KMKKFQDLRVKVNNAVAMLIPK 240
           + ED SN    + R ++R  V       + +L   +   M++F +  + +   VA L  K
Sbjct: 180 YVEDSSNKSTDYVRNKLRLKVIPYLKEMNPNLELTFENNMQRFAETELVLQTTVAALKKK 239

Query: 241 YLTVHMRS--IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
                     +       L     LLF LLR           L          L  +SG 
Sbjct: 240 LFAEKEGKYYLAMTKVKELKPQRLLLFELLRPFNFTESVVDELIAS-------LNKQSGT 292

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTL---ILYPEETTV 337
               +  R+V+DR    L ++      P L   +++P++  V
Sbjct: 293 SFYSNSHRIVVDR--ASLILSSRSGGQPGLSHQLIHPQDELV 332


>gi|283768240|ref|ZP_06341153.1| tRNA(Ile)-lysidine synthetase [Bulleidia extructa W1219]
 gi|283105117|gb|EFC06488.1| tRNA(Ile)-lysidine synthetase [Bulleidia extructa W1219]
          Length = 400

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 23/253 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              LVAVS G DSM L+     +        +      V++  R+ A +E  ++      
Sbjct: 6   GKWLVAVSTGPDSMYLVHQCLEL-------GMDIQIAHVNYHHRKQAAEEEAFIRFFAEE 58

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +I   V +    KP+    A ARE RY   ++  +      ++ AH  +D LET  M+ 
Sbjct: 59  NQIPLHVRN-DAFKPKGNFEAEAREWRYTFFAKIVRKEQLKGVLVAHQQEDLLETFLMQE 117

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           ++       GL            + + RP L  R+ +I  +L +    +  D +N +D++
Sbjct: 118 EKRLEPDYFGLKERTMM----QGISVVRPLLTMRKAEILRYLDEHQYRYFIDHTNLEDKY 173

Query: 200 ERVRVRR--------FVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRS 248
            R ++R         F+R+  L  +  +    Q+ R +V   +    + +  Y  +    
Sbjct: 174 RRNQIRHSQVETMTDFMREALLQEINRRNSILQERRHRVAKYIQKGKVSLKLYRNLEKED 233

Query: 249 IIAISQDILNIDS 261
            ++  + +L+   
Sbjct: 234 RLSTLRQLLDQKK 246


>gi|269115197|ref|YP_003302960.1| tRNA(Ile)-lysidine synthase [Mycoplasma hominis]
 gi|268322822|emb|CAX37557.1| tRNA(Ile)-lysidine synthase [Mycoplasma hominis ATCC 23114]
          Length = 311

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 104/252 (41%), Gaps = 17/252 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+ VSGG DSM LL  L S+               V++  R  +  +   VS  C+ 
Sbjct: 26  KKFLIGVSGGPDSMWLLNLLKSL---------NIVVAHVNYNKRYDSNYDESLVSRFCAD 76

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             I   ++S  N        A AR+ RY    E +K      I+ AH  DD LE+  M+ 
Sbjct: 77  NNIPLEILSLHNKYSSGNFQAIARKERYDFYFEISKKYQCDYILLAHQKDDFLESSIMQE 136

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDR 198
             +      G+  +    + + N+ I RP L    +++I  F  + +I +  D +N +  
Sbjct: 137 NSNRKPLFWGIKQLS---ILNNNV-IFRPMLNLWTKQEIIDFCNEYSILFATDYTNAETH 192

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI--IAISQDI 256
           + R ++R  ++ +D      K + F +  ++  +    ++  +            + ++ 
Sbjct: 193 YTRNKIRSNLKKLDPEQKQNKYQFFVNKNIENEHIEKQVLESFENWKNNQFNVDKLDKNF 252

Query: 257 LNIDSTLLFYLL 268
           + ID  LLFY L
Sbjct: 253 VYID-QLLFYTL 263


>gi|110834021|ref|YP_692880.1| cell cycle protein MesJ [Alcanivorax borkumensis SK2]
 gi|110647132|emb|CAL16608.1| cell cycle protein MesJ, putative [Alcanivorax borkumensis SK2]
          Length = 433

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 140/355 (39%), Gaps = 27/355 (7%)

Query: 7   ESVRFFVR--SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           ++ RF  R         +L+A+SGG        +L   L  ++    +  A+ +DH L+ 
Sbjct: 3   DAARFSQRLVEQAPDGPLLLALSGGL-----DSSLLLHLLVQAGLAPRLCAVHIDHQLQA 57

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            ++   R+   +  +  IA ++     S  + GL A AR+ARY ++   A+   ATL++ 
Sbjct: 58  DSRAWSRFCGALADKYDIALTIEPVTVSMAE-GLEAGARDARYQVLLPLARAKGATLVL- 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  +DQ ETV  R  R    +G+   G          + + RP L   +  +  +  + 
Sbjct: 116 AHHRNDQAETVLFRLLRGAGVQGLSAMGQHSQQ---QGVTLWRPLLGLGQHVLEKWGAEL 172

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP--KYL 242
           +++W EDPSN D    R  +R  +    L AL  +         +    +A        +
Sbjct: 173 SLNWLEDPSNQDQSLRRNYLRHTI----LPALRERWPGADATLARAAEHMAEANQLLTEV 228

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLR----VSAAICGGQISLPGYRSMERV--MLFLKS 296
            V   + I +S  +L +       L R    +   +   + S P    +E++  +     
Sbjct: 229 AVQDAASIGVSGAVLPLPRLAELSLARQRNVLRWWLQKNRASAPSAAVLEQIRVLHLAAE 288

Query: 297 GKRGCVSIGRVVIDRRANFLWITR--AVRNLPTLILYPEETTVWD-GRYQFQNLS 348
             +  V  G   +      L   R  A +     IL+PE     D  R+++   +
Sbjct: 289 DSQARVEWGEYAVRVHQGALHFARREAFQPWQGDILWPEGEAPPDLPRWRWTQHA 343


>gi|19115552|ref|NP_594640.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1723551|sp|Q10441|TILS_SCHPO RecName: Full=Probable tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1262421|emb|CAA94698.1| mitochondrial tRNA(Ile)-lysidine synthetase family (predicted)
           [Schizosaccharomyces pombe]
          Length = 456

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 147/362 (40%), Gaps = 31/362 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R  V    + +AVSGG DSM LL               +F A  VDH +R+ + +E   
Sbjct: 16  IRRRVGHRRLGIAVSGGVDSM-LLSWFMKESQIMFGWPNQFIAFVVDHRIRKNSTEEALQ 74

Query: 73  VSDVCSRLRIA--HSVVSWKNSKPQ--TGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                +R+ I   +  ++W N      T L   ARE RY +++    T N   I TAH  
Sbjct: 75  TIWNLNRMLIPNVYLNINWGNDDVHSLTNLETIAREHRYQVLTRACITHNIRHICTAHHA 134

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGM--------CDTILYDLNLWISRPFLRCRREDIRSF 180
           +DQ ET++MR  R       GL  M         D+I    N+ + RP L   +  I + 
Sbjct: 135 NDQAETIFMRLLRRKPGTWGGLCAMKPVSQIPESDSICGASNIELLRPLLPYYKNQILNT 194

Query: 181 LLQRNISWCEDPSNTDDRFE-RVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAM 236
             Q  I+W EDP+N D     R  +RRF+     + + A  L    FQ L+V ++N V  
Sbjct: 195 AKQHGIAWEEDPTNADINLTPRNAIRRFLNQHAALTVEATKLATA-FQSLQVNIDNKVDE 253

Query: 237 LIPKYLTVHMRS----IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
           ++   +  + +      +  S++ L   S L    L +               S+  +  
Sbjct: 254 ILKDNIVSYHQPSGTLSLCFSKNELKKHSNLTKEELLLRCLTLTTSCRQIKRSSVVSLCN 313

Query: 293 FLKSGKR----GCVSIGRVVIDRRANFLWITR-----AVRNLPTLILYPEETTVWDGRYQ 343
            +  GK+     C+     + D     L I+R     A     T+ + P+   +WD R+ 
Sbjct: 314 SVFDGKKLTIAKCLLTSSSIKDDTKLQLQISRQPFSKAELKKKTITINPDRYVLWDHRFW 373

Query: 344 FQ 345
            +
Sbjct: 374 IK 375


>gi|86151954|ref|ZP_01070167.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124890|ref|YP_004066894.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841062|gb|EAQ58311.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018612|gb|ADT66705.1| tRNA(Ile)-lysidine synthetase [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 321

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 106/280 (37%), Gaps = 24/280 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + +L+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  +      +      K Q+     AR+ RY    +         ++ AH 
Sbjct: 55  LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQGYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ E   M+  R      +     C+      N  + RP L   +++I SFL +++I 
Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  D SN ++++ R  +R+   +  +   +  +K+          + + L      ++  
Sbjct: 170 YFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDF 219

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             I   Q +L         L+  +  + G  +S    + +
Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257


>gi|329896365|ref|ZP_08271464.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC3088]
 gi|328921785|gb|EGG29156.1| tRNA(Ile)-lysidine synthetase [gamma proteobacterium IMCC3088]
          Length = 448

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 135/328 (41%), Gaps = 27/328 (8%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           V  F+   +     L+ VSGG+DS+ L+  + ++           + I +DH L   + +
Sbjct: 10  VEQFLLRYIDAPRWLLGVSGGADSVALMAFVRALGDAHDIPP--VTVIYIDHGLHPDSAN 67

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
               V  V  +L  A    S    +   GL  AAR ARY    +        ++MTAH  
Sbjct: 68  WGVLVERVSKQLSFAFEARSVVVVESGGGLEEAARAARYRAFEDLICEQ--DVLMTAHHQ 125

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLET  MR+ R    +G  L  M       + L + RP L   R D+          +
Sbjct: 126 DDQLETFLMRAFRGAGPEG--LRSMLPERSLGVGL-LIRPLLGVARNDLVQIATAIAPDY 182

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI---PKYLTVH 245
             DPSN D R++R  +R+ +  +          ++    V V  ++ +L     K  T+ 
Sbjct: 183 VLDPSNLDTRYDRGFLRQELVPLIR-------ARWPQAAVSVGRSIELLQAMWDKQNTLQ 235

Query: 246 MRSIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGYRSME---RVMLFLKSG 297
           + +I A++ +      L ++++ L +L+R   A     +  P    ++   R +  +K+ 
Sbjct: 236 VPTIRALTGEPILEVPLGLNASALAHLVRAWLAELS--LYRPSKAQLDEFVRQLEGVKND 293

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNL 325
           +   +  G   +   A  ++    + N+
Sbjct: 294 QGPILQTGHYALRFYAGSIYCCSDIANV 321


>gi|163841946|ref|YP_001626351.1| tRNA(Ile)-lysidine synthetase [Renibacterium salmoninarum ATCC
           33209]
 gi|162955422|gb|ABY24937.1| tRNA(Ile)-lysidine synthetase [Renibacterium salmoninarum ATCC
           33209]
          Length = 363

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 18/320 (5%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              + +R  +  L     +LVA SGG DS+             +    +  AI VDH L+
Sbjct: 29  KARKILREALPELEATDLVLVACSGGPDSL---ALAAVAAFFNNRKSFRVGAIIVDHGLQ 85

Query: 64  ETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           + +    +  +       +    + +        G   +AR ARY  +   A    A  +
Sbjct: 86  DGSAAVAQQTAAKLRAFGLAPVEIRTVDVVAGPGGPEDSARVARYGALEAAAVEHGAVAV 145

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  HT DDQ E V +   R    +   LSGM     +   + + RPFL   RE+  +   
Sbjct: 146 LLGHTLDDQAEQVMLGLARGSGTR--SLSGMPARREFPGGVHL-RPFLPLSREETEAICA 202

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAV 234
             ++    DPSN+D  F R R+R  V       L   + +               ++   
Sbjct: 203 VESLEPWRDPSNSDPGFTRSRIRHDVLPYLEVELGPGIAESFYRSASILAQDADFLDQLA 262

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG-QISLPGYRSMERVMLF 293
                +   +    ++    ++  +   L   +L ++    GG Q S    R+ E ++  
Sbjct: 263 QAEFDRIAELAPEQVLLSEAELNQLAPALRHRVLALAVVHLGGTQPSFERLRAAEALLR- 321

Query: 294 LKSGKRGCVSIGRVVIDRRA 313
            + G  G V +   V   R 
Sbjct: 322 -RHGSAGPVQLAGKVSAYRQ 340


>gi|50365488|ref|YP_053913.1| lysidine synthetase [Mesoplasma florum L1]
 gi|61216500|sp|Q6F0E4|TILS_MESFL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50364044|gb|AAT76029.1| lysidine synthetase [Mesoplasma florum L1]
          Length = 398

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 134/322 (41%), Gaps = 21/322 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVAVSGG DSM +L  L  +         +     V++  RE +  + + V D C +  +
Sbjct: 13  LVAVSGGPDSMFMLNELIKMNIK------EIVVCHVNYNFREDSWKDQKLVEDFCLKNNL 66

Query: 83  AHS--VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
                +++   SK +    + AR  RY    E +K  N   ++ AH  +D +ET  ++  
Sbjct: 67  KLEKLIINQDYSKLKENFESWARNIRYDFFVEISKKYNIQNVLIAHNRNDLVETFLLQQD 126

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    K  GL+    T  Y   + I RP L   + +I   L + NI++  D +N D +++
Sbjct: 127 RKGYVKHYGLN---KTSTYKE-ITIVRPMLNILKSEILKSLKEENIAFVIDSTNEDKKYK 182

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIAISQDILNI 259
           R ++R  + +   +     +KK      K    + + +  Y+  +M    + I++++ + 
Sbjct: 183 RNKIRANLSESTFNDFEETIKKLN----KKLEIINLEVNWYVNNNMSADELKINKNLQDQ 238

Query: 260 DSTLLFYLLRVSAAICGGQISLPGYR--SMERVMLFLKSGKR--GCVSIGRVVIDRRANF 315
           D   +   +     +      +   R  ++  +   +K  ++    ++IG   I +    
Sbjct: 239 DLEFIQRTIYKWLEVIKKDFVIQNRRNKTIFEIAKNIKVSEKVFWEINIGEYSIIKDYEN 298

Query: 316 LWITRAVRNLPTLILYPEETTV 337
           L+I       P  IL   +  +
Sbjct: 299 LFIIETKAIQPKTILIKSKEDL 320


>gi|261855736|ref|YP_003263019.1| tRNA(Ile)-lysidine synthetase [Halothiobacillus neapolitanus c2]
 gi|261836205|gb|ACX95972.1| tRNA(Ile)-lysidine synthetase [Halothiobacillus neapolitanus c2]
          Length = 444

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 134/339 (39%), Gaps = 39/339 (11%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           SL  P  +++A SGG+DS+G L+ LH+          + + +S+DH +   + +      
Sbjct: 9   SLPKPLKVVLASSGGADSLGALVWLHNQYQQGVID--EITVVSIDHQIHPDSAEWSARAC 66

Query: 75  DVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHA----KTINATLIMTAH 126
              S   I    +           Q  L + AR ARY  +        +  +  +++TAH
Sbjct: 67  QQASFFSIESHCIKIDVPTRGIHGQHSLESRARWARYEALRSWLYRRYQPEDEPVLVTAH 126

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +DQ+ET  + + R       GLS M     +    W  RPFL+  R+D+R F     +
Sbjct: 127 HLEDQVETFLLAALRGSGA--AGLSAMPALTRFGAG-WHWRPFLQMPRDDLRQFAASLPL 183

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
              +DPSN D  ++R  +R  +           +    +   +  + +A+L         
Sbjct: 184 IPVDDPSNQDLSYDRNYLRAEILPRIQSRWPQALVSLGEAARQSGDDLALL--------- 234

Query: 247 RSIIAISQDILNIDSTLLFYLLRVS---------AAICGGQISLPGYRSMERVMLFLKS- 296
            S+ AI  ++ +++   L  LL ++           I      +P    +   +  LK+ 
Sbjct: 235 ESLAAIDGNLESLERLPLSQLLALAPSRQANVLRTWIKRHGALMPPKARLIEFLRQLKTA 294

Query: 297 --GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPE 333
              +   ++ G  +I R  + LW       +P  +  PE
Sbjct: 295 EPDQHPELAWGDWLISRYRDELWW-----RIPPDLQAPE 328


>gi|254564206|ref|YP_003071301.1| tRNA(Ile)-lysidine synthase [Methylobacterium extorquens DM4]
 gi|254271484|emb|CAX27499.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase,
           tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein
           [Methylobacterium extorquens DM4]
          Length = 342

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 91/317 (28%), Positives = 138/317 (43%), Gaps = 21/317 (6%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++  F+     PA  L+AVSGG DS  L+ A      DR      F   +VDH LR  + 
Sbjct: 15  ALAPFLEEPARPA--LLAVSGGPDSTALMHAAARAGRDR------FRVATVDHALRPGSA 66

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           DE   V  + + L + H++++W   +  + + A+AR ARY L+++HA  I   LI+TAHT
Sbjct: 67  DEALGVGRLAAELGLVHTILTWDAPRHGSRIQASARGARYKLLTDHAGRIGTGLILTAHT 126

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV MR          GL+GM D       + + RPFL   + D+ ++     + 
Sbjct: 127 LDDQAETVLMRLIAGSGP--SGLAGMRDERPLAPGIRLVRPFLSLSKADLVAYCEMHRLP 184

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  DPSNTD+RF R R         L    L   +   L V+     A L  +   V   
Sbjct: 185 FLRDPSNTDERFTRAR--LRRLLPLLAEEGLNAARLARLAVRAGRDDAALRQRAEAVR-S 241

Query: 248 SIIAISQDILNIDSTLLFY-----LLRV---SAAICGGQISLPGYRSMERVMLFLKSGKR 299
            I+   +  L +D   L       +LRV   +          P  + +ER+   +     
Sbjct: 242 EIMRTDKGGLRLDGQRLRREPCAIVLRVVDAALDTVAPVHEAPVPKRLERLEALVLDALL 301

Query: 300 GCVSIGRVVIDRRANFL 316
             ++ GR +       L
Sbjct: 302 PALAEGRALRRTLRGVL 318


>gi|260495550|ref|ZP_05815675.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_33]
 gi|260196892|gb|EEW94414.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Fusobacterium sp. 3_1_33]
          Length = 448

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +    +F   K   + ++H LR   A  +  +  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKLQ---NFINFKIYLVHINHLLRGKDAVSDENFSFEYAKKN 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +    V     +    L    RE RY   SE  K + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSEIYKKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R  + +G+         +   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIRGASLQGL-------EGIKIKNNNIIRPISEIYKKDILDYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NEFTRNSIRLDLIPFIEKRYNIKFK 217


>gi|256028355|ref|ZP_05442189.1| cell cycle protein MesJ [Fusobacterium sp. D11]
 gi|289766281|ref|ZP_06525659.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. D11]
 gi|289717836|gb|EFD81848.1| tRNA(Ile)-lysidine synthase [Fusobacterium sp. D11]
          Length = 448

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 15/205 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           I+V  SGG DS+ L+  L  +    +F   K   + ++H LR   A  +  +  +   + 
Sbjct: 23  IVVGFSGGPDSVFLVEMLKKLQ---NFINFKIYLVHINHLLRGKDAVSDENFSFEYAKKN 79

Query: 81  RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   +    V     +    L    RE RY   S+  K + A  I TAH  DDQ+ET  
Sbjct: 80  NLEIFIKRIPVKEIAKEVGKTLEEVGREERYKFFSKIYKKVGANKIATAHNKDDQIETFL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R  R  + +G+         +   N  I RP     ++DI  +L +  I +  D +N +
Sbjct: 140 FRLIRGASLQGL-------EGIKIKNNNIIRPISEIYKKDILDYLNKNEIQYKIDKTNFE 192

Query: 197 DRFERVRVRRFVRDIDLHALYLKMK 221
           + F R  +R  +         +K K
Sbjct: 193 NEFTRNSIRLDLIPFIEKRYNIKFK 217


>gi|325124579|gb|ADY84102.1| cell cycle protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 417

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 59/273 (21%), Positives = 113/273 (41%), Gaps = 17/273 (6%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K   I +DH L+  + +    V+   + L I +++   + +     L A AR+ARY    
Sbjct: 8   KIRIIYIDHQLQSKSAEWGELVAKQATHLNIPYTIQKVQVTD--GNLEAQARQARYQAYL 65

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +H +     +++ AH   DQ ETV +R        G+       +I + +++ I RPFL 
Sbjct: 66  QHLQAN--EILVLAHHQQDQAETVILRLLSGTGVDGLAAM---QSIDHRVDMTIWRPFLD 120

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             RE I  +  Q  I +  DP+N D  ++R   R  +    L   + KM++       + 
Sbjct: 121 LTREQIAEWTTQLEIEYVVDPTNYDIHYDRAWSREELWP-FLQNRFPKMQQALSRTSYLM 179

Query: 232 NAVAMLIPKYLTVHMRSIIAISQ----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
              + ++ + L   +++           +L + S     LL  S  + G     P +  +
Sbjct: 180 QDASEILEEVLKADLQNCGTDECLDLTQLLKLSSARQRQLL--SVWMKGDGQYRPAFEMV 237

Query: 288 ERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317
           ER+   ++  KS  +  +   +    R  + L+
Sbjct: 238 ERLKNEVIDSKSDAQAALHWNQFYYVRYQHHLY 270


>gi|207722907|ref|YP_002253341.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
 gi|206588091|emb|CAQ18671.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 462

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 130/327 (39%), Gaps = 12/327 (3%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +   FV S   P  + VA+SGG DS   L+   +   D +   ++  A+ V H L+  
Sbjct: 11  VAACAAFVVSGGRPT-VAVALSGGRDSAA-LLHAAAAWRDAAGAPVRLVALHVHHGLQAD 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A       + + + + +   V   + S     G+  AAREARYA +        ATL++T
Sbjct: 69  ADAWEAACARMAAAVDVECHVRRVRVSVDAGRGIEEAAREARYAALDALCAETGATLLLT 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ ETV ++  R     G+    M         + + RP+L   R DI +++   
Sbjct: 129 AHHLDDQAETVLLQLLRGAGLDGLSAMPM----ERPGGVTLLRPWLDVPRSDIETYVRTH 184

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLH--ALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            ++W EDPSN D R+ R  +R  +  +  H  A    M +      +    +  +    L
Sbjct: 185 ALAWVEDPSNHDARYARNALRPLLAGMAGHFPAYRASMARSAAHLAEAAALIDEIAQADL 244

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRGC 301
                + +    D+  +       +LR   A  G +         +   +L  ++    C
Sbjct: 245 ARIAPAGMLALADLAALSGPRQRAVLRAWLAGAGLRAVASRRLEDLRAQLLTARTDGALC 304

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTL 328
           V +    + R     WI   V   P +
Sbjct: 305 VRLPGAQVRRYRAQAWI--EVAGQPEV 329


>gi|283956826|ref|ZP_06374300.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791687|gb|EFC30482.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 1336]
          Length = 321

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 107/280 (38%), Gaps = 24/280 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + +L+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILALLKRGKNLLAFSYGSDSSALFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E     ++  +      +      K Q+     AR+ RY    +     +   ++ AH 
Sbjct: 55  LEELKAKELALKFHKKIFIKH--APKFQSNFEKKARDFRYDFFEKICLEQDYDHLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQ E   M+  R      +     C+      N  + RP L   +++I SFL +++I 
Sbjct: 113 LNDQFEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           +  D SN ++++ R  +R+   +  +   +  +K+          + + L      ++  
Sbjct: 170 YFYDESNENEKYFRNYIRKNFSNAFVSKFHQGLKR----------SFSYLNEDRKKLYDF 219

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             I   Q +L         L+  +  + G  +S    + +
Sbjct: 220 ENIKEIQGLLICPKNE--SLIARAVKMKGLLLSTAQRKEL 257


>gi|77457345|ref|YP_346850.1| hypothetical protein Pfl01_1118 [Pseudomonas fluorescens Pf0-1]
 gi|123605783|sp|Q3KH95|TILS_PSEPF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|77381348|gb|ABA72861.1| putative tRNA(Ile)-lysidine synthase [Pseudomonas fluorescens
           Pf0-1]
          Length = 442

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 116/317 (36%), Gaps = 20/317 (6%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++  +  +H  +A SGG DS    +        ++      SAI V H L+  A     +
Sbjct: 16  LKPWLGASHWRIAFSGGLDSTV--LLHLLAKLAKNQSIPALSAIHVHHGLQAAADAWPAH 73

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              VC  L +   V   +  +P   +  AAR+ARYA  S  A T    +++T    DDQ 
Sbjct: 74  CQAVCEELAVPLQVQRVQV-QPGASVERAARDARYAAFS--AATQANDVLLTGQHRDDQA 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+  R  R    +G  LSGM  T        + RP L   R ++ ++     + W EDP
Sbjct: 131 ETLLFRLLRGAGVRG--LSGMPATRALGQGS-LVRPLLDVTRAELEAYARDHGLRWIEDP 187

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN D +F R  +R  +  + +                +  A  +L         ++ +  
Sbjct: 188 SNQDRQFSRNYLRHQIMPLLIGRWPQAHASMARSAAHLREAQGLLDELAQIDLTQASLPS 247

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV-----------MLFLKSGKRGC 301
             +   + S     + ++S A     +S      + R+           +    +     
Sbjct: 248 EFEWSGLPSLEFAAIAKLSDARQRNALS-HWLEPLTRLPDTDHWSGWVDVRDAGNDASPI 306

Query: 302 VSIGRVVIDRRANFLWI 318
             +    + R A  LW 
Sbjct: 307 WRLADGELHRSAGRLWW 323


>gi|297588663|ref|ZP_06947306.1| PP-loop family protein [Finegoldia magna ATCC 53516]
 gi|297574036|gb|EFH92757.1| PP-loop family protein [Finegoldia magna ATCC 53516]
          Length = 451

 Score =  175 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 14/237 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               IL+ +SGG+DS+ L   L+ +  D  F   +     ++H  R+TA  +  +  ++ 
Sbjct: 19  KNDKILIGLSGGADSVFLFNVLYQLKDDLDF---EIKTCHINHSYRDTAIRDENFSREIS 75

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I          +        L  + R  RY   +E  ++     I  AH  DDQ+E
Sbjct: 76  EEKNIQFFSKKVDMKQFSLDNSISLEDSGRILRYNCFNEILESEKLNKIAVAHHLDDQVE 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T ++   R     G  L G+        N  I RP L   + +I ++L + NI +  D +
Sbjct: 136 TFFLHLFRGSGIDG--LCGIQ-----YRNKDIIRPLLDVSKSEILTYLDENNIEYVTDET 188

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N     +R ++R  +           + +     + +      +I     +    ++
Sbjct: 189 NFVADVQRNKIRLEMLPYIQENFNCSINESIYRTINILKDSKEIIDDVTILKYEKLV 245


>gi|187918640|ref|YP_001884206.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia hermsii DAH]
 gi|119861488|gb|AAX17283.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia hermsii DAH]
          Length = 439

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 126/318 (39%), Gaps = 29/318 (9%)

Query: 1   MF----LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           MF    ++ IES  F+ ++ +     +VA SGG+DS  LL+ L   L++         A 
Sbjct: 2   MFWNDIVTKIES--FYFKNSLPKGKSIVAFSGGADSTTLLLGLKEYLNN------NIVAF 53

Query: 57  SVDHCLRETAKD--EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYA 108
              H +R   +   E+ ++   C+   I   +      +  ++S+    +   AR+ RY 
Sbjct: 54  YFAHYIRPEFEQNLEIEHIKKFCNFHNITFQIKRCSVDIKRESSQLGMSVEELARKYRYN 113

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + E  K   A  I  AH  +DQ ET+ MR  +     G        + +  +N  I RP
Sbjct: 114 ALLEALKENEARYIALAHNKNDQFETLVMRFFQGSFLDGF-------SGIPIINGNIIRP 166

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            L   RE+I  FL   NI +  D +N +D + R R+R  +  +         +  + +  
Sbjct: 167 LLEVSREEIEQFLSLNNIVYFVDSTNHEDLYLRNRIRNNLMPVIGKIFKGYERGLERISD 226

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRS 286
             ++ V     K    + +     S D +   S   + + R         G +S   Y +
Sbjct: 227 FSSDLVDYFDKKDFLPYSKGNYYYSFDAMTFFSLPKYLVFRSIFKILNLEGIVSNLSYGA 286

Query: 287 MERVMLFLKSGKRGCVSI 304
           +  +     + KR  + +
Sbjct: 287 LNEIFRVNPANKRSKILL 304


>gi|332187375|ref|ZP_08389113.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17]
 gi|332012536|gb|EGI54603.1| tRNA(Ile)-lysidine synthetase [Sphingomonas sp. S17]
          Length = 330

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/306 (24%), Positives = 126/306 (41%), Gaps = 11/306 (3%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           PA +L+AVSGG DS      +  ++   +    + +  +VDH LR  A +E+R V++ C 
Sbjct: 28  PAPLLLAVSGGPDS------MAMLMLAAAAFPGRIAVATVDHGLRPEAAEELRMVAEHCR 81

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L + H  +          L A AREARYAL+++ A+ I A  I+TAH  DDQ ET  MR
Sbjct: 82  ILGVPHHGLRPATPIEGASLQAQAREARYALLADQARAIGAAAILTAHHADDQAETFLMR 141

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
           + R     G+              + + RP L  RR ++R  + +    + +DP+N D R
Sbjct: 142 AARGAGLSGLSG---VRVRTEINGVPVLRPLLDWRRAELRQIVRRAEAPFVDDPANHDPR 198

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
            +R R R+ +   +   +    +    L     +  A +   +          +     +
Sbjct: 199 HDRTRFRQLLGANEWLGVAQMARAAAQLAEADADLRATVDWLWQERAQIDDDNVRIAAAD 258

Query: 259 IDSTLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           +   L   L R +        ++  P +     +   L +   G  +    VI    + +
Sbjct: 259 LPRELGRRLARRAIGTVRQVATIENPAWSEGGNIEKLLDALAAGSRATQAGVIASVRSGV 318

Query: 317 WITRAV 322
           W  R  
Sbjct: 319 WRFRPA 324


>gi|210629984|ref|ZP_03296207.1| hypothetical protein COLSTE_00091 [Collinsella stercoris DSM 13279]
 gi|210160735|gb|EEA91706.1| hypothetical protein COLSTE_00091 [Collinsella stercoris DSM 13279]
          Length = 353

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 118/304 (38%), Gaps = 33/304 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETAKD-EVR 71
           A +++ VSGG+DS  LL+        +   R   +I   +   + V+H LR  A D +  
Sbjct: 12  APVVLMVSGGADSTALLLMACTGALDIADGRGPARIARERLHVLHVNHHLRGEASDGDEA 71

Query: 72  YVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTI--------NATLI 122
           +V ++C+R  +   V            L AAAR+ RYA    + + +        +A  I
Sbjct: 72  FVRELCAREGLPLCVEHASFADLGGQNLEAAARDVRYAAARRYVRELCAQTGAPRSAARI 131

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAHT  D+ ET +M + +     G+       + +      I RP L     D+  +L 
Sbjct: 132 LTAHTASDRAETFFMNAIKGSGAAGL-------SSIPRRRNIIVRPLLDMTHADLIRYLQ 184

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-------FQDLRVKVNNAVA 235
               SW ED SN D  + R  VR  +  +         +          D    ++   +
Sbjct: 185 VAGQSWREDESNQDTGYLRNFVRHRLMPVAGERNANVARNVSAACDILGDEDAFMSQLAS 244

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
             +   +      +I +    L      +   ++R++     G+  L   R +E V+  +
Sbjct: 245 TALRSCVRRRASGLIVLDVSRLAAAEVAIARRMVRLAVRELDGEARL-EMRHVEAVLSCV 303

Query: 295 KSGK 298
             G+
Sbjct: 304 AMGE 307


>gi|57168991|ref|ZP_00368120.1| conserved hypothetical protein [Campylobacter coli RM2228]
 gi|57019657|gb|EAL56346.1| conserved hypothetical protein [Campylobacter coli RM2228]
          Length = 321

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 90/215 (41%), Gaps = 12/215 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++  + SL+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2   QIKDEILSLLKKGRNLLAFSYGSDSSALFHFLVQ-------KKIDFDLVMINYKTRKNSD 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            E +   ++         + S    K        AR+ RY    +     N + ++ AH 
Sbjct: 55  LEEQKSKELALEFHKKIFIKSAPVIK--GNFEKEARDFRYDFFEKICLEQNYSNLILAHH 112

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            +DQLE   M+  R      +     C+      N  + RP L   +++I S+L + +I 
Sbjct: 113 LNDQLEWFLMQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFMSKDEILSYLKENDIF 169

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           + +D SN ++++ R  +R+   +  +   +  +K+
Sbjct: 170 YFQDESNENEKYFRNYIRKNFSNAFVSKFHQGLKR 204


>gi|115378573|ref|ZP_01465727.1| PP-loop family [Stigmatella aurantiaca DW4/3-1]
 gi|115364401|gb|EAU63482.1| PP-loop family [Stigmatella aurantiaca DW4/3-1]
          Length = 468

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 130/332 (39%), Gaps = 32/332 (9%)

Query: 4   SPIESVRFFVRSL--------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
            P  + R   R+L        +    +L+AVSGG DS  LL+    V   R    I    
Sbjct: 19  RPRRATRLICRTLEASFRSVGLAHRSVLLAVSGGVDSTALLLGTALV---RERLGILVEV 75

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
            ++DH LR  A +EVR V  + +R ++   V S    K   GL   AREARYA +S+   
Sbjct: 76  ATLDHGLRPEAMEEVRAVERLAARQKMICHVRSLHV-KEGPGLEVRAREARYAALSQLCS 134

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 I TAHT  DQ ET+ MR  R  + +G        T +      + RP L   RE
Sbjct: 135 ERKLAAIATAHTASDQAETLLMRLARGTSLRGA-------TGITSARGVLVRPLLALTRE 187

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-------LKMKKFQDLRV 228
            + +FL ++   +  DP N D RF R R+R  V      A+            +      
Sbjct: 188 QVEAFLGEQEEGFAVDPMNADPRFLRARIRHHVLPALTQAVGYPVTERLASFARLAAEDE 247

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
            +  ++A      L      + A+    L +          ++ A       +    ++E
Sbjct: 248 ALLQSLAGAAWDRLRGSGEGLDAVGVRALELPLRRRVLARLLAEARA-----VVDAATLE 302

Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
           RV+  ++ G+   +S   + +      +   R
Sbjct: 303 RVLAAVEGGRSATLS-HGLQLRASGGLVRCVR 333


>gi|240141698|ref|YP_002966178.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase,
           tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein
           [Methylobacterium extorquens AM1]
 gi|240011675|gb|ACS42901.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase,
           tRNA(Ile)-2-lysyl-cytidine synthase); YaeN protein
           [Methylobacterium extorquens AM1]
          Length = 342

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/299 (25%), Positives = 132/299 (44%), Gaps = 13/299 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DS  L+ A      DR      F   +VDH LR  + DE   V  + + L +
Sbjct: 28  LLAVSGGPDSTALMHAAARAGRDR------FRVATVDHALRPGSADEALGVGRLATELGL 81

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            H++++W   +  + + A+AR ARY L+++HA  I A LI+TAHT DDQ ETV MR    
Sbjct: 82  VHTILTWDAPRHGSRIQASARGARYRLLTDHAAGIGAGLILTAHTLDDQAETVLMRLIAG 141

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL+GM +  +    + + RPFL   + D+ ++     + +  DPSNTD+RF R 
Sbjct: 142 SGP--SGLAGMREERVLAPGIRLVRPFLSLSKADLVAYCEMHRLPFLRDPSNTDERFTRA 199

Query: 203 RVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           R+RR +       ++   L     +       +      ++ +       ++      + 
Sbjct: 200 RLRRLLPLLAEEGLNAARLARLAVRAGRDDAALRQRAEAVLSEITRTDEAALRLDGLRLR 259

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
                ++  ++  +          P  + +ER+   +       ++ GR +       L
Sbjct: 260 REPCAIVLRVVDAALDTVAPAHEAPVPKRLERLEALVLDALLPALAEGRALRRTLRGVL 318


>gi|209518042|ref|ZP_03266873.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. H160]
 gi|209501546|gb|EEA01571.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. H160]
          Length = 475

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 142/413 (34%), Gaps = 40/413 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE++   + +L     I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 2   IEALGAALSALDPNDRIAIAFSGGVDSSVLLDAAVRVA-----GASRCIALHVHHGLSPN 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +         +         S+ P   + AAAR+ARY  +       +   +  
Sbjct: 57  ADAWLAHCEAFARERGVEFDARRVDVSRAPGVSIEAAARDARYRALDAMCAMHDVRTLWL 116

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+       ++    +    RP L   R  +  +   R
Sbjct: 117 AQHADDQAETVLLQLLRGAGLAGLAAMA-PGSLPAGASTTRVRPLLHLLRAQLEHYASVR 175

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            + W +D SN D R+ R  +R  V    + AL +    F+D   +     A       T+
Sbjct: 176 KLRWIDDESNADTRYARNALRHQV----MPALAVHFPGFRDALARTAAHAAAAQRLLDTL 231

Query: 245 HMRSIIAISQD-------------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
               +   S+D               +    LL Y +R    +      +       R +
Sbjct: 232 ARADMEGASRDEGRALAHDALLALDDDRALNLLRYWMRTLGFVAASSARVADALRQLREV 291

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT-----------LILYPEETT---- 336
              + G R  +      +      ++      + P             +++  +      
Sbjct: 292 GVGQDGHRLRIDHAGHALRSYRGLVYWEAGESSEPADETALVERELSELVWQGQEVWHLP 351

Query: 337 VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389
            W G + F  + D+   +      + +    IP  + QRA  S+ ++ GG+ +
Sbjct: 352 QWRGTFVFAVV-DATTALDVAETSREEAFETIPVSVLQRASLSVRARRGGERM 403


>gi|255733074|ref|XP_002551460.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240131201|gb|EER30762.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 503

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 105/281 (37%), Gaps = 26/281 (9%)

Query: 11  FFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            F +SL        P+ + VA+SGG DSM L   L +    R    +   AI++DH  R 
Sbjct: 7   LFKKSLSKLFRAGMPSKVAVALSGGPDSMLLTWLLQN--QKRQMKNLDIYAITIDHKYRS 64

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINA 119
            + +E + V        + H + S +     + K  T     ARE RY ++S+     + 
Sbjct: 65  GSHEEAKKVHQWIKDWDVLHIIKSLEYKDNIDPKKLTNFEEVAREERYRVMSQICFKESI 124

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-----------YDLNLWISRP 168
            ++   H  DDQLET   R Q + +  G+  +     +              L + I+RP
Sbjct: 125 PVLFMGHHRDDQLETFIQRLQGNSSIFGLAGTRSVSPVPTSKDLSPNETQDKLQIQIARP 184

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKF-QDL 226
           FL   ++DI        I +  D +N D     R  +R  + ++  H             
Sbjct: 185 FLEFDKKDILETCNANGIHYVTDLTNGDVGLTRRNYLRYLIGEVIPHKSGNHQGDISASE 244

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
               N+  +++    L     S    +    N    L  YL
Sbjct: 245 TTARNDPYSLIQKTELIKSHASCHDFASLFENKAQKLSAYL 285


>gi|297568349|ref|YP_003689693.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924264|gb|ADH85074.1| tRNA(Ile)-lysidine synthetase [Desulfurivibrio alkaliphilus AHT2]
          Length = 347

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R +     ++V  SGG DSM LL AL ++ +   F      A+ VDH LR E +++E + 
Sbjct: 16  RLIAAGELVVVGTSGGPDSMALLYALKTLSAAMHF---NLLAVYVDHGLRPEESREEEQL 72

Query: 73  VSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           ++ V + L I        V     +    L  AARE RY   ++ A    A  I  AHT 
Sbjct: 73  MAAVAAALEIPWRGGRVAVRDYARQQGLSLEHAARELRYRFFAQVAAETGAAKIAVAHTA 132

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ              +G    G+           I RP L   + ++ ++L QRNI++
Sbjct: 133 DDQA-----EELLLRLLRGTARGGLSGMAPLARG-RIIRPLLAVSKAEVLAYLAQRNIAF 186

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-----FQDLRVKVNNAVAMLIPKYLT 243
             D SN D RF R RVR  +          ++++        L+ +     AM    Y  
Sbjct: 187 ARDSSNQDLRFVRNRVRLELVPWLKQRFNPRLRETLCHTATVLQDEEELLAAMADEAYRQ 246

Query: 244 VHMRSIIAISQDILNID--STLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRG 300
             +    A +   L++   +     L R    +   ++ L P  R +E+++     G +G
Sbjct: 247 ARVAGEPAKAALTLSLPFFAAQPRALQRRLLEMALLELQLKPAGRQIEQLLHGADRGGKG 306

Query: 301 CV--SIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
            +    G V + + A  L   R             ++T
Sbjct: 307 VIGHLAGGVTVYKDAKSLRFHREAPGPRRRPPASGKST 344


>gi|307128621|ref|YP_003880651.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           CARI]
 gi|306483083|gb|ADM89953.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Sulcia muelleri
           CARI]
          Length = 432

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 84/204 (41%), Gaps = 16/204 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80
           I V+VS G DSM LL  L  +        I    I  +  LR   ++ +  ++ + C + 
Sbjct: 22  IYVSVSSGLDSMVLLDVLMKIC------NIPICVIHCNFNLRGNDSEKDELFIQEFCLKN 75

Query: 81  RIAHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +I      +   NS     +   AR+ RY              I   H  DD +ET ++ 
Sbjct: 76  KIFFKSKKFNTINSNSNFSIQMMARKFRYDWFKYLLNNSYCDYIALGHNLDDSIETFFIN 135

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G G+ G+     +     I RP     +++I S+  +  I W ED SN D +
Sbjct: 136 LIR-----GTGIKGLIGINNFKNQ--IIRPLSFFLKKEIISYANENKIKWREDISNYDHK 188

Query: 199 FERVRVRRFVRDIDLHALYLKMKK 222
           + R R+R F++ I  +  Y   KK
Sbjct: 189 YLRNRIRFFLKPILDYKFYNGFKK 212


>gi|218885398|ref|YP_002434719.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756352|gb|ACL07251.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 433

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 92/235 (39%), Gaps = 15/235 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +++ VSGG+DS   L  L  +        ++  A  +DH LR  + DE R V+ +C RL
Sbjct: 80  RLVIGVSGGADS---LCLLLVLRWLAPRLGLRLHAAVLDHGLRPESADEARAVAALCRRL 136

Query: 81  RIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V         ++   GL  A R ARYA      +   A    TAH  DD  E V 
Sbjct: 137 GVPCRVQRADVSDLAARECCGLEDAGRRARYAFFEAERQRTGADWTCTAHQADDLCEDVL 196

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +R  R     G+G     D         I RP L   R DI +FL    +    DPSN D
Sbjct: 197 LRLVRGTGWPGLGGMAAMDPARR-----ILRPLLTTERRDIDAFLADLGVQPVRDPSNAD 251

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             + R R+R  V  +   +  AL   +    +L     +  +  +      H   
Sbjct: 252 PAYRRNRLRHQVLPLLRAENPALGEAVCSLWELARCDADYWSRHLAHAQAGHADG 306


>gi|110003919|emb|CAK98259.1| hypothetical protein mesj of the pp-loop superfamily [Spiroplasma
           citri]
          Length = 434

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 16/253 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L      ++ VSGG DSM LL  ++    +       F    V++  R+ +  +   V
Sbjct: 4   KLLKQNTKYVIGVSGGPDSMFLLDNIY----NSELDINNFIVCLVNYQKRKDSDYDEEIV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHT 127
            + C +  I   V     S  +          A ARE RY    + ++  +   ++ AH 
Sbjct: 60  VEYCQKRNIKICVKKVTASDYEQYQVNSHNFQAVARELRYDFFLQISEKYHCQGVLIAHN 119

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSG--MCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             D +ET  ++ QR+   +  GL+      + L D  L I R  L+  RE+I  +L  + 
Sbjct: 120 LTDHIETYILQKQRNGIVEYYGLNKTSYYYSQLLDKKLKIFRIMLKISREEIIEYLFHKQ 179

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           I++  D +N    + R  +R  ++ I+L  + L++++    R K N  + ++   YL  +
Sbjct: 180 INYAIDSTNILAIYNRNIIRNEIQHINLQDMLLEIEQ----RNKENEQLKLIAKNYLIEN 235

Query: 246 MRSIIAISQDILN 258
              I   S + LN
Sbjct: 236 FGQINVTSFNALN 248


>gi|283852225|ref|ZP_06369498.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. FW1012B]
 gi|283572451|gb|EFC20438.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio sp. FW1012B]
          Length = 606

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 80/227 (35%), Gaps = 16/227 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +  A  LVA SGG DS   L+ L  +L        +  A  +DH LR  +  E   V   
Sbjct: 52  LRGATWLVACSGGPDS---LVLLQILLLLAPRLGFRLEAAHLDHGLRPGSGAEAARVRAF 108

Query: 77  CSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C    +   +     +      + GL  A R ARY   ++         +   H  +D  
Sbjct: 109 CRDRDVPCHLRRVDVADVSRTRKLGLEDAGRAARYGFFADLLAERPGAFVALGHQLNDLA 168

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E   MR  R      +G     D         + RP L   R DI +F     +    DP
Sbjct: 169 EDQLMRLTRGTGWPALGGMAAVDPARR-----LVRPLLLTPRRDIEAFAAALGLPVVHDP 223

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +N D  F R R+R+      L  L  +  ++ +   ++     +   
Sbjct: 224 TNDDPAFLRNRLRQ----GALPMLCAENARYLEAAARLWRQARLDAD 266


>gi|229495229|ref|ZP_04388964.1| tRNA(Ile)-lysidine synthase [Porphyromonas endodontalis ATCC 35406]
 gi|229317672|gb|EEN83570.1| tRNA(Ile)-lysidine synthase [Porphyromonas endodontalis ATCC 35406]
          Length = 473

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 29/316 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L   A +LVA+SGG+DS+       ++L        +  AI  +  LR E +  + ++  
Sbjct: 26  LEPHASVLVALSGGADSV-------ALLLALQLANYRPIAIHCNFHLRGEESLRDEQFCR 78

Query: 75  DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           D+  +L I   V  +      +  +  +  AARE RY +  + A       I  AH   D
Sbjct: 79  DLTDQLGIELEVHHFDTRAYAATHRLSVEMAARELRYQVFEQEASKRGIEAIAVAHHLQD 138

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+     R     G+         +      I RP L    ++I  FL      +C 
Sbjct: 139 NVETLLGNLSRGTGLTGL-------RGILPKRGSIIRPLLDVHPKEIHDFLHLLGQPFCN 191

Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           D +N D   +R  +R  +  +  +L+  +L   +     ++    +     + L    R 
Sbjct: 192 DSTNQDTTIKRNAIRHSIIPLFQELNPQFLTTSRSTLAHLRDAETIYQKGIEALLTEARV 251

Query: 249 IIAISQDILNIDSTLLFYLLRVSAA------ICGGQISLPGYRSMERVMLFLKSGKRGCV 302
                     I +  +  LLR   A      I  G+       ++E+    L S     +
Sbjct: 252 PQVFPFSYTTILTYKVESLLRSGVAPTLLHYITKGKGF--SADAIEQFAAQLSSPHPVSI 309

Query: 303 SIGRVVIDRRANFLWI 318
           +     ++ R   L +
Sbjct: 310 TANSHTLECRQGLLHL 325


>gi|160897951|ref|YP_001563533.1| tRNA(Ile)-lysidine synthetase [Delftia acidovorans SPH-1]
 gi|160363535|gb|ABX35148.1| tRNA(Ile)-lysidine synthetase [Delftia acidovorans SPH-1]
          Length = 319

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/332 (21%), Positives = 117/332 (35%), Gaps = 41/332 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            ++  F   L     + VA SGG+DS  LL+A             +  AI V H L+  A
Sbjct: 3   AAIHRFAPQLP----LAVAFSGGADSTALLLACAERWPG------QVVAIHVHHGLQSAA 52

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTI-------- 117
              V     VC++  +   +        P      AAR+ RYA + E A+          
Sbjct: 53  DAFVGQCEKVCAQHAVPLKIRRVDARHAPGQSPEDAARQLRYATLIEAAREPWPVQGASG 112

Query: 118 ----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +  A   DDQ+ET+ +   R     G+       +     +L   RP L   
Sbjct: 113 DPLPPVRSMALAQHADDQVETLLLALSRGAGVAGLAAMPAQWS---RADLEWHRPLLDLP 169

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
            + +R +L  R  +W EDP+N D R+ R R+R  +      A       F         A
Sbjct: 170 GQALRDWLAARGQAWVEDPTNADARYTRNRIRAQLLPALQQAFPQFRATFARSSRHCAEA 229

Query: 234 VAMLIPKYLTVHMR-----SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
             +L                I A+        + +L + LR   AI       P    ++
Sbjct: 230 AELLQEMAQADLAAIGTPPGITALQALSPARQANVLRHWLRSVHAIT------PSAAQLD 283

Query: 289 RVMLFL----KSGKRGCVSIGRVVIDRRANFL 316
           +++  +      G R  + +GR  + R  + L
Sbjct: 284 QLLAQIGVCRTRGHRIHLKMGRGFVRRLGSVL 315


>gi|301167026|emb|CBW26605.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Bacteriovorax
           marinus SJ]
          Length = 430

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 116/316 (36%), Gaps = 24/316 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I VA+SGG DS+ LL  L  +  +++F   + SA  ++H  R     E  +  ++
Sbjct: 29  LEGESICVALSGGVDSVTLLYCLKWI--EQNFNGPRISAHHINHGTRRENIREEDFCREL 86

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C  L++   V         T     ARE RYA           + +      DD  E   
Sbjct: 87  CRELKVPLKVSKVSLDLLSTNFEMKARELRYAEFKNELAPH--SFMALGQHIDDSYEWSL 144

Query: 137 MRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           M+S R       +G+           N    RPF+   ++ I++   +  ++W ED SN 
Sbjct: 145 MQSFRSATPSTSLGIPVC--------NGSFIRPFMCLTKDQIKTLAKKLELTWYEDHSND 196

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---------AMLIPKYLTVHM 246
           + RF+R  +R+ +           +K + +    +   +         +       +   
Sbjct: 197 NVRFDRNYIRKNITTSIADRYPKYLKHYVNRSNSLAKTLGLSVFKPKKSSKKILKKSWKG 256

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
           R +  I+ D  +        +L+   ++         +  +++ +   K+GK G +    
Sbjct: 257 RGVCFINTDFKSSFEVDRSEILKAIYSLSKNS-RGSLHDQVDKFLALGKNGKSGPLIFSG 315

Query: 307 VVIDRRANF-LWITRA 321
            V    +   L++   
Sbjct: 316 GVRGYSSKGCLFLLGE 331


>gi|121998224|ref|YP_001003011.1| tRNA(Ile)-lysidine synthetase [Halorhodospira halophila SL1]
 gi|121589629|gb|ABM62209.1| tRNA(Ile)-lysidine synthetase [Halorhodospira halophila SL1]
          Length = 440

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 109/301 (36%), Gaps = 14/301 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS  LL AL  V   R       +A+ +DH L   +         VC RL + 
Sbjct: 23  VAFSGGRDSTALLHALAEV---RDRLPAPLAAVHIDHGLHPESARWAEACESVCERLGVG 79

Query: 84  HSVVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                         GL AAAREARY    E         ++ AH  DDQ ET  +R+ R 
Sbjct: 80  LECRRVVVPPSAGQGLEAAAREARYRAFGELLAA--GDCLVLAHHADDQAETFLLRALRG 137

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               G  L  M           + RP L   R  + ++L  R++ W EDP+N D   +RV
Sbjct: 138 GGLHG--LCAMPAWRPLGRG-RLVRPLLEVPRTALTAYLQSRSLDWIEDPANRDPAHDRV 194

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML---IPKYLTVHMRSIIAISQDILNI 259
            +R  V  +            Q     +    A+L   + + L     +    +   L  
Sbjct: 195 YLRERVLPVLAARWPDATGHLQSAVASLQADQALLGGYLDRDLATARAADGRPAVAELRR 254

Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRANFLW 317
                   +     +C G    PG R    V   ++SG   +  +      I R    L+
Sbjct: 255 LMPYQRQAVVRHWLVCSGYRPPPGRRLAAGVQALIESGPDAQPELRWTDGCIRRYRGRLY 314

Query: 318 I 318
           +
Sbjct: 315 L 315


>gi|61217183|sp|Q5N517|TILS_SYNP6 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 325

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 107/295 (36%), Gaps = 21/295 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + +L+AVSGG DS+ L+  L  +           +    DH  R  +     ++  
Sbjct: 23  LPTRSRLLLAVSGGQDSLALVQLLRGLQP---HWHWSLAIAHCDHGWRSDSTANAEHLRQ 79

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +  + ++                 AAAR  RY ++   A  I+A L++T HT  D+ ET+
Sbjct: 80  LADQWQLPFYCQRSPEPPRS---EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETL 136

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R    +G  L+ +         L + RPFL   R +    + Q  +   ED +N 
Sbjct: 137 LYNLTRGSHLQG--LASLRWQRSLSDRLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNR 194

Query: 196 DDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           D RF R R+R       R +       L    +   D    +      +  + L+     
Sbjct: 195 DRRFARNRLRLEVLPQLRQINPQCDRHLANTAELLADEADWLAELTEQVYQQSLSERGLC 254

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
              ++Q  + +   +L   L+            P    +E +   + + +  C S
Sbjct: 255 RSQLAQQPIALQRRVLHAFLQDQLQRS------PSTVQVEELRQLITAPQGSCSS 303


>gi|332283467|ref|YP_004415378.1| cell cycle protein MesJ [Pusillimonas sp. T7-7]
 gi|330427420|gb|AEC18754.1| cell cycle protein MesJ [Pusillimonas sp. T7-7]
          Length = 342

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/331 (19%), Positives = 125/331 (37%), Gaps = 26/331 (7%)

Query: 6   IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           ++++   V +L   +  I + +SGG+DS  +L    ++   R+   ++     V H L+ 
Sbjct: 16  LKAIAAAVNALPKASRRIGIGLSGGADS-AMLAVHAALYGRRT--GVELHCFHVHHGLQA 72

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIM 123
            A     +V D+   L+I+      +       G+ +AAR+ RY  + E A   N   I+
Sbjct: 73  PADGWQTHVHDLAQMLQISCHTRFVQVDVSGGDGMESAARDMRYDALQELAVQANLHHIL 132

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS---- 179
            AH  +DQ ETV +R  R     G+        ++    L   RP+L   R  I      
Sbjct: 133 LAHHQNDQAETVLLRLLRGAGPIGLAAM---APVMQRQGLSYVRPWLEVDRALILQQAEL 189

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           F          DPSN DD++ R  +R  +   +L+  +   +       + +   A  + 
Sbjct: 190 FASLTGWVPVSDPSNADDQYTRAALRERLAP-ELNERWPGWQGILARHARQSAEAAEALH 248

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL------LRVSAAICGGQISLPGYRSMERVMLF 293
           +        +   S D  +        L      L +   +    + +P    ++ +M  
Sbjct: 249 ELAEQDFAGL-EPSADTCSFSLAAWRELSPSRQALVLRYWLAQQGLRMPTDARLQDLMRQ 307

Query: 294 LK------SGKRGCVSIGRVVIDRRANFLWI 318
           L+        +   +  G+V I      ++I
Sbjct: 308 LRGLHALGHDRHMQLKHGQVWIRCAKGRVFI 338


>gi|229816588|ref|ZP_04446887.1| hypothetical protein COLINT_03646 [Collinsella intestinalis DSM
           13280]
 gi|229807923|gb|EEP43726.1| hypothetical protein COLINT_03646 [Collinsella intestinalis DSM
           13280]
          Length = 535

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 137/396 (34%), Gaps = 39/396 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETA 66
           R     A +++ VSGG+DS  L +        +   R   +I   +   + V+H LR  A
Sbjct: 36  RGQALAAPVVLMVSGGADSTALALMACTGELDIDDGRGCARIARERLHVLHVNHHLRGEA 95

Query: 67  KD-EVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTIN------ 118
            D +  +V D+C  L +   V            L AAAR+ RYA    + + ++      
Sbjct: 96  SDGDEAFVRDLCECLGLPLCVEHAHFADLDGRNLEAAARDVRYAAARRYVRELSRQSGTP 155

Query: 119 --ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  I+TAHT  D+ ET +M + +     G+       + +      I RP +     +
Sbjct: 156 RTAARILTAHTASDRAETFFMNAIKGSGAAGL-------SSIPRRRNIIVRPLMDRTHGE 208

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVK 229
           +  +L      W ED SN D  + R  VR  +  +          ++        D    
Sbjct: 209 LVRYLQVAGQPWREDESNRDTSYLRNFVRHRLMPLAAERNPGVARSVGAACDILGDEDAF 268

Query: 230 VNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
           ++   A  +          ++ +    +   +  +   ++R++      +  L   R +E
Sbjct: 269 MSQLAATALRSCTRREGAGLVVLDAARLAAAEVAIARRMVRLAVKRVAPEARL-EMRHVE 327

Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWI---TRAVRNLPTLILYPEETTVWDGRYQ-- 343
            V+  + +G+        V        L     T   R     +  P    V  GR    
Sbjct: 328 AVLACVAAGEGSVALPEGVDARIEFGTLSFRTPTERERAATGWLPVPGSMVVAGGRVLES 387

Query: 344 -FQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALS 378
            F  + +    +       A+   G   +I   AL 
Sbjct: 388 AFVRVPEGHDAVSLARGLSAEAGGGTVAVIDAAALG 423


>gi|257438697|ref|ZP_05614452.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium prausnitzii A2-165]
 gi|257198832|gb|EEU97116.1| tRNA(Ile)-lysidine synthetase [Faecalibacterium prausnitzii A2-165]
          Length = 300

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 103/309 (33%), Gaps = 27/309 (8%)

Query: 4   SPIESVRFFVRS--LVYPA------HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
             I  V  F R   L  PA      H+  AVSGG+DSM     L  +L  R       +A
Sbjct: 7   KLIAKVERFARQEQLFAPAEPGRALHLCAAVSGGADSMA---LLRVLLELREAFGYPLTA 63

Query: 56  ISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYALIS 111
             V+H LR  A D +  +V   C+RL +  +V    +     P       AR  RYA  +
Sbjct: 64  CHVNHGLRGEAADRDEAFVRAECARLGVPLTVFRPADVGMTVPPHAGEDWARRLRYACFA 123

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +         I TAHT  DQ ET+  R  R     G G        +        RP L 
Sbjct: 124 QLLA-GGIDCIATAHTATDQAETLLFRLARGTGLHGAG-------GIRPRRPGYCRPLLG 175

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             R +  +        W  D +N  D + R R+R               +       K  
Sbjct: 176 LTRAETEALCAAFGQGWVTDETNESDAYARNRLRHGAVPALRSVNDAAEENLARFCEKAA 235

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
            A A    +   +   + +  +Q           + L+       G   L    ++  ++
Sbjct: 236 RADAYFSRRAEQLLSIARLDAAQTACKAPKAREAWRLKPL----QGADPLILEAALHSLV 291

Query: 292 LFLKSGKRG 300
             ++  +  
Sbjct: 292 APVRDAEEK 300


>gi|304321216|ref|YP_003854859.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis
           HTCC2503]
 gi|303300118|gb|ADM09717.1| hypothetical protein PB2503_08309 [Parvularcula bermudensis
           HTCC2503]
          Length = 393

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 139/353 (39%), Gaps = 35/353 (9%)

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTIN 118
           R ++++E   V+  C    + H+ ++W  S P       L AAAR+ARY L+ +  +   
Sbjct: 2   RPSSREEADLVAAWCRARGLRHTTLTWARSDPARKGGGTLTAAARQARYKLLCQACEQHG 61

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRR 174
              + TAHT DDQ ETV+MR +R     G G++GM    L        + + RP L  RR
Sbjct: 62  LDRVATAHTADDQAETVFMRLRRGG---GQGMAGMPRERLIAAGPGPAIRLLRPLLGVRR 118

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY--------LKMKKFQDL 226
             +R++    ++ + +DPSN D R+ERVRVR  +  ++   L          +     D 
Sbjct: 119 ARLRAYAKTHDLPFVDDPSNADPRYERVRVRALLGALEEQGLLTVAALCEVAEATALADR 178

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
           R    + V   +     +H    + +   +    + L    L    A  G     P +  
Sbjct: 179 RGDGRDLVQAYL-TAEGLHSDGSVYLPLHLPADGTALGVAPLARVIAALGSA--PPRWAD 235

Query: 287 MERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA----------VRNLPTLILYPEETT 336
           +      +       +S  ++  D     LW+ R            R L    L   +  
Sbjct: 236 VPPPASIV---APLTLSGVQIEPDPNGKGLWVFREPAALLGRRDGSRPLVPQPLKAGQHV 292

Query: 337 VWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389
           ++D R+      D+          +   PS      A+R L+++P    G+ +
Sbjct: 293 LFDRRFIVTAPPDTPPGASLCPLGQLVPPSIALSTSARRRLATLPVICVGERV 345


>gi|218533183|ref|YP_002423999.1| tRNA(Ile)-lysidine synthetase [Methylobacterium chloromethanicum
           CM4]
 gi|218525486|gb|ACK86071.1| tRNA(Ile)-lysidine synthetase [Methylobacterium chloromethanicum
           CM4]
          Length = 347

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 20/319 (6%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++  F+     PA  L+AVSGG DS  L+ A      D           +VDH LR  + 
Sbjct: 15  ALAPFLEEPARPA--LLAVSGGPDSTALMHAAARAGRDL------LHVATVDHALRPGSA 66

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           DE   V  + + L + H++++W   +  + + A+AR ARY L+++HA  I A LI+TAHT
Sbjct: 67  DEALGVGRLAAELGLVHTILTWDAPRHGSRIQASARGARYKLLTDHAARIGAGLILTAHT 126

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV MR          GL+GM D       + + RPFL   + D+ ++     + 
Sbjct: 127 LDDQAETVLMRLIAGSGP--SGLAGMRDERPLAPGIRLVRPFLSLSKADLVAYCEMHRLP 184

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM---------KKFQDLRVKVNNAVAMLI 238
           +  DPSNTD+RF R R+RR +  +    L             +    LR +    +A + 
Sbjct: 185 FLRDPSNTDERFTRARLRRLLPLLAEEGLNAARLTRLAVRAGRDDAALRQRAEAVLAEIT 244

Query: 239 PKYLTVHMRSIIAISQDILNIDS-TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
                    + + +    L  +   ++  ++  +          P  + +ER+   +   
Sbjct: 245 RTDEASTDAARLRLDGQRLRREPCAIVLRVVDAALDRVAPPHEAPVPKRLERLEALVLDA 304

Query: 298 KRGCVSIGRVVIDRRANFL 316
               +  GR +       L
Sbjct: 305 LLPALGEGRALRRTLRGVL 323


>gi|81299947|ref|YP_400155.1| hypothetical protein Synpcc7942_1138 [Synechococcus elongatus PCC
           7942]
 gi|81168828|gb|ABB57168.1| conserved hypothetical protein YCF62 [Synechococcus elongatus PCC
           7942]
          Length = 336

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 107/295 (36%), Gaps = 21/295 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + +L+AVSGG DS+ L+  L  +           +    DH  R  +     ++  
Sbjct: 34  LPTRSRLLLAVSGGQDSLALVQLLRGLQP---HWHWSLAIAHCDHGWRSDSTANAEHLRQ 90

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +  + ++                 AAAR  RY ++   A  I+A L++T HT  D+ ET+
Sbjct: 91  LADQWQLPFYCQRSPEPPRS---EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETL 147

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R    +G  L+ +         L + RPFL   R +    + Q  +   ED +N 
Sbjct: 148 LYNLTRGSHLQG--LASLRWQRSLSDRLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNR 205

Query: 196 DDRFERVRVR-------RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           D RF R R+R       R +       L    +   D    +      +  + L+     
Sbjct: 206 DRRFARNRLRLEVLPQLRQINPQCDRHLANTAELLADEADWLAELTEQVYQQSLSEKGLC 265

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
              ++Q  + +   +L   L+            P    +E +   + + +  C S
Sbjct: 266 RSQLAQQPIALQRRVLHAFLQDQLQRS------PSTVQVEELRQLITAPQGSCSS 314


>gi|213965144|ref|ZP_03393342.1| tRNA(Ile)-lysidine synthetase [Corynebacterium amycolatum SK46]
 gi|213952258|gb|EEB63642.1| tRNA(Ile)-lysidine synthetase [Corynebacterium amycolatum SK46]
          Length = 334

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 132/329 (40%), Gaps = 30/329 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHS--VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +++ +SGG+DS+ L     +  +    +    K  A+ VDH L++ + +     + +   
Sbjct: 12  VVIGLSGGADSLALTAGACAEALGPKGALAGRKVHAVVVDHQLQQGSAEVAERAAHMARE 71

Query: 80  LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +     V++   N+    G    AR AR+ ++ E A++  A  +M AHT DDQ ETV +R
Sbjct: 72  MGATAEVIAVDINNNSDRGPEYEARLARHTVLREVAQSRGA-ALMLAHTLDDQAETVVLR 130

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   LS + D + +     I RP L  RR D +    +  +    DP N DD 
Sbjct: 131 LARGGGPQ--ALSAIRDNLTWSDGTRILRPLLGVRRTDTQLCCEELGLKVWHDPHNHDDH 188

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS----- 253
           + RVRVR+ +  +    L   + +       +       +  +    + +++        
Sbjct: 189 YARVRVRKTILPLLEKELGPGVAENLAKTAAIAAVDNDFLDAHADSALHALLGEEVTSAS 248

Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK-----------SG 297
                + +  +D  +   +L       G +   P  + ++ VM  +             G
Sbjct: 249 GSLSVRGVAELDDAIAVRVLARWLRQAGAE---PSSKQIDMVMALVHRYHGQGEVPVTRG 305

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLP 326
           + G     R+V++R+   L +      +P
Sbjct: 306 RDGADRNARLVVERKDGTLQLVMNRPAVP 334


>gi|189425578|ref|YP_001952755.1| tRNA(Ile)-lysidine synthetase [Geobacter lovleyi SZ]
 gi|189421837|gb|ACD96235.1| tRNA(Ile)-lysidine synthetase [Geobacter lovleyi SZ]
          Length = 476

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/311 (23%), Positives = 129/311 (41%), Gaps = 28/311 (9%)

Query: 4   SPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             ++++R F  +L  P   ++V VSGG+DS+ LL  L ++        +      ++HCL
Sbjct: 15  KLLDAIRRF--NLCRPGDCLIVGVSGGADSVALLDLLATL----PGFPLTLVVAHLNHCL 68

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R   +  + ++V  +  R ++        +S    + +  L  A R ARYA   E     
Sbjct: 69  RGAESDGDQQFVQQLADRYQLPCELRCADISQLARQQRLSLEEAGRTARYAFFDELRTRH 128

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  I  AH  DDQ ET           +G G +G+      + +  I RP L   R+++
Sbjct: 129 HAAAIAVAHHSDDQAET-----LLLRLLRGAGTTGLSAMAPLNRDG-IIRPLLGISRQEL 182

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           R +L  R + + ED SNTD  + R RVR  +  +         ++       +     +L
Sbjct: 183 REYLTARGLVFREDSSNTDQAYLRNRVRHELLPLLQEYNPAIAERLSATASLLGEDETLL 242

Query: 238 IPKYLTVHMR------SIIAIS-QDILNIDSTLLFYLLRVSAAICGG---QISLPGYRSM 287
           +    T   +         A++   +      L   L R++ A   G   +  L  Y+ +
Sbjct: 243 LHCTETAFRQLACSGTGWNALALAGLRQQPHALRLRLYRMAIASLRGHQQRFELRHYQLL 302

Query: 288 ERVMLFLKSGK 298
           +R++L   +G 
Sbjct: 303 DRLLLEGSTGA 313


>gi|89898057|ref|YP_515167.1| PP-loop superfamily ATPase [Chlamydophila felis Fe/C-56]
 gi|123483693|sp|Q255L6|TILS_CHLFF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|89331429|dbj|BAE81022.1| PP-loop superfamily ATPase [Chlamydophila felis Fe/C-56]
          Length = 317

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/312 (22%), Positives = 120/312 (38%), Gaps = 23/312 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +  F  SL      L+A+SGGSDS+ LL  L S         + F A+ VD+  RE++
Sbjct: 10  KRLEVFFSSLDMKKSYLLALSGGSDSLFLLYLLKS-------RGVSFIAVHVDYGWRESS 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             E   +   C    +   V       +       AAR  RYAL  +  +  N + I  A
Sbjct: 63  YREAEELELRCQAEGVPIIVDHVPPEYRTSRDQENAARRYRYALFHKVCQKKNLSGIFLA 122

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +DQ ETV  R           L GM   + Y+  + I RP L   +  +   L   N
Sbjct: 123 HHANDQAETVLKRVLEGAHL--SNLKGMRGEVYYE-GIPILRPLLHIPKIVLSRTLDAAN 179

Query: 186 ISWCEDPSNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
           I +  D +NTD+R+ R R+R  +     +I    +   +        +++  +      +
Sbjct: 180 IHYVHDITNTDERYLRARMRNKIFPWLEEIFGKNITQPLLTLAQDSEELSCYMKQQAQPF 239

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS----LPGYRSMERVMLFLKSG 297
           L    +    +S   L I  TL+  +  ++  +C         +     ++ V   L  G
Sbjct: 240 LEKIRKENTTLS---LEIPKTLIEQVF-LTKWVCKEFFYSAGIVASRHFLQTVYDHLNRG 295

Query: 298 KRGCVSIGRVVI 309
               + +    +
Sbjct: 296 LPAQMRLRNKRV 307


>gi|330470517|ref|YP_004408260.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032]
 gi|328813488|gb|AEB47660.1| tRNA(Ile)-lysidine synthetase [Verrucosispora maris AB-18-032]
          Length = 329

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 14/317 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L     +LVA SGG+DS+ L  A   V             ++VDH L+  + 
Sbjct: 14  AVRRVLAELPADGPVLVACSGGADSLALAAAAAFVAPRSGRVA---GLVTVDHGLQTGSA 70

Query: 68  DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +    V+    +  +    VV  + +    G  AAAREARY  + E A    A  ++T H
Sbjct: 71  ERAEAVARWAEQAGLSPVEVVRVEVAGRPGGPEAAAREARYQALVEAAGRHRAAALLTGH 130

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R    +G+    +   +     + + RP L   RE  R+      +
Sbjct: 131 TRDDQAETVLLALARGAGPRGLAGMPVRRDL---GGVPLVRPLLEISREQTRAACAALRL 187

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYL----KMKKFQDLRVKVNNAVAMLIPKYL 242
           +  +DP N D  + R RVR  +    +  L       + +   L    N  +  L    L
Sbjct: 188 TPWQDPHNLDPAYARSRVRAQLVPALVETLGPGVVDNLARTARLVAADNAVLDELAGGAL 247

Query: 243 TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKR 299
                    ++   L ++   +   +LR  A   G   +   +R +  +   + +  G+ 
Sbjct: 248 LAARHPDGGLATKTLADLAGAVRGRVLRAWAHELGSPPAALSHRHIAALDALVTAWRGQG 307

Query: 300 GCVSIGRVVIDRRANFL 316
                G + + R+A+ L
Sbjct: 308 AAYLPGGLRVVRQADRL 324


>gi|121611837|ref|YP_999644.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter eiseniae EF01-2]
 gi|121556477|gb|ABM60626.1| tRNA(Ile)-lysidine synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 308

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 118/315 (37%), Gaps = 23/315 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +++      + V +SGG+DS  LL+A             +  A+ V H L+  A    ++
Sbjct: 1   MQAFAPALPLAVGLSGGADSSALLLACARRWPG------QVQALHVHHGLQAAADGFEQH 54

Query: 73  VSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTIN----ATLIMTAHT 127
            + +C RL++   V   + S  P      AAR+ARY  ++  A+          I+    
Sbjct: 55  CAALCQRLQVPLMVQHLRASPAPGQSPEDAARQARYQALAALAQANQTHDAIKSIVIGQH 114

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R     G+        +     L   RP L+    D+R +L  +  +
Sbjct: 115 ADDQAETVLLALLRGAGVAGLAAMPARWEMA---GLTWHRPLLQVTAADVRQWLRAQGQT 171

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           W EDPSN D R  R R+R  +    L A +   +             A L+         
Sbjct: 172 WVEDPSNADQRLTRNRIRAQLMP-ALDAAFPTFRDTFARSAANAAQAAQLLETLAQQDQA 230

Query: 248 SIIAISQ--DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----GKRGC 301
            +    Q   +  +       +LR    +     + P    +  ++  +++    G R  
Sbjct: 231 QVGRPPQIGPLQGLSRARQANVLRHW--LRNAHHTTPAAAQLHELLDQIEACTTRGHRIH 288

Query: 302 VSIGRVVIDRRANFL 316
           + +GR  + R    L
Sbjct: 289 IKVGRGFVVRCGPQL 303


>gi|172037514|ref|YP_001804015.1| putative cell cycle control PP-loop ATPase MesJ/YaeO [Cyanothece
           sp. ATCC 51142]
 gi|171698968|gb|ACB51949.1| putative cell cycle control PP-loop ATPase MesJ/YaeO [Cyanothece
           sp. ATCC 51142]
          Length = 323

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 134/328 (40%), Gaps = 24/328 (7%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M+ S    V   ++    L    ++L+AVSGG DS+ LL  +  +     +     +   
Sbjct: 1   MWTSLHARVHQTLKDSLILPRKNNLLIAVSGGQDSLCLLKLMIDLQKKWGW---NLAIGH 57

Query: 58  VDHCLRETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
            DH     +      +V ++ +  +I       K ++      AAARE RY  + E AK 
Sbjct: 58  CDHGW--ASDLGIADHVRELANDWQIPFY---LKVAEAMEETEAAAREWRYHSLIEIAKE 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              T ++T HT  D+ ET+     R     G+G   +         + + RP L+  R +
Sbjct: 113 HQFTEVLTGHTLSDRAETLLYNLIRGAGSNGLG--ALTWKRPLTNKINLVRPLLKVSRSE 170

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNN 232
              F  Q ++   ED  N +  + R R+R+     +++     + + + +  ++    +N
Sbjct: 171 TLEFCKQFSLPIWEDAVNANLDYARNRIRQQLLPYLKENFNPNVEITLSQTSEVLKAESN 230

Query: 233 AVAMLIPKYL-TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
            +     K L      +   ++++IL ++   L   ++R   A     ++ P +  +E  
Sbjct: 231 YLEAEANKILQEAFNHNNYTLNREILKDLPLALQRRVVRQFLAEIM--VTRPNFEQIEET 288

Query: 291 MLFLKSGKRGCVSI--GRVVIDRRANFL 316
           +  + + +R   S   G ++++   N +
Sbjct: 289 VKLIDAPRRSRTSSFPGNLILEVEENCI 316


>gi|296282864|ref|ZP_06860862.1| ATPase [Citromicrobium bathyomarinum JL354]
          Length = 288

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/268 (25%), Positives = 120/268 (44%), Gaps = 21/268 (7%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           +  A +VDH LR  + DE  +V+ VC  L I H+ +    S     L A AR  RY  + 
Sbjct: 10  RVRAATVDHGLRPESADEAAFVARVCEGLGIPHATLRVDVSP--GNLQANARAVRYEALG 67

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-----S 166
            H + + A++  TAH  DDQ ET+ MR  R       GL+G+    ++     I      
Sbjct: 68  CHFEQVGASVFATAHHADDQAETLLMRLNRGSGL--AGLAGVRPWSVFFPEGIIEEMVMV 125

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKF 223
           RP L  RR ++ + +    I   +DPSN+DD F+R R+R+ + D   +D  A+    +  
Sbjct: 126 RPLLGWRRGELAAVVRAAGIEAVDDPSNSDDAFDRARMRKAIADAEWLDPLAMARSARHL 185

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283
            +    + + V+ +  + +         +    L      +  + ++   + GG++    
Sbjct: 186 AEAEEAIGDYVSSVANQLIWRDGACYFCMGYPRL----VEIGVVEKILDRLGGGEV---R 238

Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVIDR 311
              + R++  L++ +    S+G V+  R
Sbjct: 239 RSEVARMVDRLRARENA--SLGGVLAKR 264


>gi|332530123|ref|ZP_08406072.1| tRNA(Ile)-lysidine synthetase [Hylemonella gracilis ATCC 19624]
 gi|332040393|gb|EGI76770.1| tRNA(Ile)-lysidine synthetase [Hylemonella gracilis ATCC 19624]
          Length = 313

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 117/317 (36%), Gaps = 31/317 (9%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A SGG+DS  LL+A             +  A+ V H L+  A      V   C  L I  
Sbjct: 2   ACSGGADSTALLLACAERWPG------QVQALHVHHGLQAAADGFEAQVRATCEPLNIPL 55

Query: 85  SVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
                     P      AAR ARYA ++E A       +  A   DDQ+ET+ +   R  
Sbjct: 56  HTWRVDARHAPGQSPEDAARGARYAALTEAALMAGVRDVALAQHADDQVETLLLALSRGA 115

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS----WCEDPSNTDDRF 199
              G+              L   RP L     ++R +L  R +     W +DPSN D+R+
Sbjct: 116 GLPGLASMPQA---WERGGLRWHRPLLDVPGAELRVWLEARGLRAGAGWVDDPSNADERY 172

Query: 200 ERVRVRRFVRDI------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----HMRS 248
            R R+R  +  +         A + +         ++ N +A+       V     H   
Sbjct: 173 TRNRIRARLLPVLDVVFPQFRATFARSAAHAAQAQRLLNELAVQDAAATGVGIDPGHGPR 232

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLFLKS----GKRGCV 302
           I  +     +  + LL + LR + A+    G  +      +E ++  + +    G R  +
Sbjct: 233 IAELRALSRDRQANLLRHWLRQAHAMADPHGGSANASSAQLEELLDQVAACATRGHRIEL 292

Query: 303 SIGRVVIDRRANFLWIT 319
            +G   ++RR + L   
Sbjct: 293 KVGAGRVERRGDILAWY 309


>gi|89068037|ref|ZP_01155454.1| Probable cell cycle protein [Oceanicola granulosus HTCC2516]
 gi|89046276|gb|EAR52333.1| Probable cell cycle protein [Oceanicola granulosus HTCC2516]
          Length = 377

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/365 (24%), Positives = 147/365 (40%), Gaps = 22/365 (6%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M +L    +         I+ + ++VDH LR  A DE   V+     L + H V+ W + 
Sbjct: 1   MAMLHLAAAWA---RVFGIRLAVVTVDHGLRPEAADEAALVAAEAELLGLPHDVLRW-HW 56

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
             Q  L  AAR AR  LI +    I    +  AHT DDQ ET+ +R +R    +G  LSG
Sbjct: 57  DGQGNLQDAARRARARLIGDWRGEI--AHVAFAHTRDDQAETLLLRLRRGSGVEG--LSG 112

Query: 153 MCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
           M +    D+  W I RP L   R+++R +     I + +DPSN D  ++RVR+RR + D+
Sbjct: 113 MAER--RDMGGWQIVRPLLDAGRDELRHYCRVLRIPYADDPSNADPTYDRVRIRRLLSDL 170

Query: 212 DLHALYLKMKKFQDLRVKVNNAVA-----MLIPKYLTVHMRSIIAISQDILNIDSTLLFY 266
           +   L          R++            +  +  +     ++        I++     
Sbjct: 171 EAEGLGAGTLAATAARLRRARTALARRAYDVAERVASTEAGDVLFERDGFAGIETDTQLR 230

Query: 267 LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP 326
           LL  +          P   ++E ++    +G  G +   RV++ R       TR  R   
Sbjct: 231 LLAAALQYVASAEYRPRAAALEALLERALAGGGGTLHGCRVLVGRTH-----TRIAREYE 285

Query: 327 TLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGG 386
            +    +E  VWD R++        + +             +P    + AL + P+   G
Sbjct: 286 AVRALRDEAGVWDRRWRVVYEPREGLAVRALGEVGLAQAPELPDA-PRVALHAAPALFDG 344

Query: 387 KPLLA 391
             L+A
Sbjct: 345 DRLVA 349


>gi|254525679|ref|ZP_05137731.1| tRNA(Ile)-lysidine synthase [Prochlorococcus marinus str. MIT 9202]
 gi|221537103|gb|EEE39556.1| tRNA(Ile)-lysidine synthase [Prochlorococcus marinus str. MIT 9202]
          Length = 338

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 63/253 (24%), Positives = 106/253 (41%), Gaps = 18/253 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +   ++IL++VSGG DSM LL  ++ +   +       S    DH   E +      +  
Sbjct: 29  IPKGSNILISVSGGQDSMALLNLINDL---KKLHNWTISVWHGDHQWHEKSSLYALELKS 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128
            C    I+ S    + +K        ARE RY  + E AK         +   ++T HT 
Sbjct: 86  YCEDKNISFSFD--QANKENISSEEKAREWRYKKLCERAKTVLNKNQQKHNIYLLTGHTS 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D  ET  +   R       GLS +    L +  +++ RP L   RED + F     I  
Sbjct: 144 SDNAETFILNLSRGS--NFAGLSNIESKRLLENQIFLIRPILIFSREDTKKFCNHMKIPV 201

Query: 189 CEDPSNTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            EDP+N+D + +R  VR+ +    ++       ++  F     K NN    L  +   ++
Sbjct: 202 WEDPTNSDLKLKRNLVRKKIIPTLEVIYPGCSERINNFSQKMSKYNNERNDL-SELAYLY 260

Query: 246 MRSIIAISQDILN 258
            + I  I++++LN
Sbjct: 261 CKDIKGINRNLLN 273


>gi|87301619|ref|ZP_01084459.1| possible MesJ-like protein [Synechococcus sp. WH 5701]
 gi|87283836|gb|EAQ75790.1| possible MesJ-like protein [Synechococcus sp. WH 5701]
          Length = 365

 Score =  173 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 126/352 (35%), Gaps = 28/352 (7%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+SGG DSM L   L  +   R     +      +H  R+ A D+   ++     L +  
Sbjct: 34  AISGGQDSMALTALLLEL---RRLHGWELHLWHGNHGWRKEAADQAGELAAWAGGLGLPI 90

Query: 85  SVVSWKNSKPQT--GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            V +   +   +  G   A R  RY  +++ A ++  T ++T HT  D+ ET+     R 
Sbjct: 91  RVENAPAAPASSASGREEAGRRWRYERLNQQALSLGCTRVVTGHTGSDRAETLLFNLARG 150

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +G  LS +         + + RP L   R +  SF  Q+ +    DP NTD RF R 
Sbjct: 151 CGLRG--LSSLRARRPLSGRIELVRPLLGFSRAETASFCKQQQLPLWLDPGNTDPRFSRN 208

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI----IAISQDILN 258
           R+R+ V  +         ++   L  ++     +     L   M         ++     
Sbjct: 209 RLRQEVLPVLEELHPGAWRRLGALAERLEGTQNLTQELALLALMALETPPAAPLAAGRPE 268

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
               L    L    A            S + ++L L   +   V +G   ++     L +
Sbjct: 269 QGPELQRQPLSELTA------------SSQELLLDLWLERSAGVRLGARSLEALRRRLPL 316

Query: 319 TRAVRNLPTLILYPEETTVWDGR--YQFQNLSDSLIQIGPQSYRKADVPSGI 368
           +   +   +L L    +  WD +  +     SD     GP     A  PS  
Sbjct: 317 S---QGPGSLALPGGRSLHWDRQSLWLQPEPSDHAGPSGPPEPGAASAPSNR 365


>gi|296126844|ref|YP_003634096.1| tRNA(Ile)-lysidine synthetase [Brachyspira murdochii DSM 12563]
 gi|296018660|gb|ADG71897.1| tRNA(Ile)-lysidine synthetase [Brachyspira murdochii DSM 12563]
          Length = 450

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 15/258 (5%)

Query: 7   ESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR- 63
           E+ +F + ++  +    + VA SGG DS  +L   + +  D SF       I V++ LR 
Sbjct: 4   ETSQFLLSNIDDIKNKTLAVAYSGGIDSQVMLNIAYRLKDDLSF---NLIIIHVNYNLRG 60

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           E + ++  +  ++  +  I   V    +NS     +   AR  RYA   E         +
Sbjct: 61  EDSTNDELFAREMAKKYNIDIYVKEIPQNSYIGKNIQLEARNDRYAFFEELYNKKIYDYL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + AH  DD  ET+  R  +                L     +I RP L   R+DI  +  
Sbjct: 121 LIAHNKDDLAETIIYRMIKGAGTN-------VYKSLRGKKGYILRPILNFYRKDIEIYAQ 173

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             +++  ED SN  + + R ++R  +  + L  +    K       K +     ++ K +
Sbjct: 174 VNSLTHREDYSNKKNYYARNKIRNLIIPM-LEEINTNAKTNIIRFAKRSYEETYILRKKI 232

Query: 243 TVHMRSIIAISQDILNID 260
               +  I+     LNI+
Sbjct: 233 NKLYKKNISEKNKKLNIE 250


>gi|325109969|ref|YP_004271037.1| tRNA(Ile)-lysidine synthase [Planctomyces brasiliensis DSM 5305]
 gi|324970237|gb|ADY61015.1| tRNA(Ile)-lysidine synthase [Planctomyces brasiliensis DSM 5305]
          Length = 332

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 112/309 (36%), Gaps = 14/309 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCS 78
             ++VAVSGG+DS+ LL     +  +     ++      +H  R    + ++ ++  +C+
Sbjct: 22  RQLMVAVSGGADSIALLRGCVFLAEECE---LRLVVAHFNHRTRPGENERDLEWLQALCT 78

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +L +        +    +      R+AR     + A++     +  AH  DDQ ETV  R
Sbjct: 79  QLAVPFVAGERDSQASTSSSENELRQARRRFFIDTARSREIGTVCFAHHADDQAETVLHR 138

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R       G++GM +       +   RP L    + +R FL + +    ED SN   +
Sbjct: 139 LCRGTGL--AGMTGMQEVSSLAEGIVAFRPLLGLPGQALRDFLSEIDQPHREDASNASSQ 196

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM-------LIPKYLTVHMRSIIA 251
           + R R+R+ +  +                 ++  ++ +       L+   L       + 
Sbjct: 197 YTRNRIRQQLTPLLEQIHPGAAANIARSAEQLRESLELQQRLASALLNLVLIDAGPQYVR 256

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLP-GYRSMERVMLFLKSGKRGCVSIGRVVID 310
           + +  L     L+     V                  +R++   +     C   GR+  +
Sbjct: 257 LRRQPLACAEPLIARDALVQLWTEQNWPRQAMTRAHWQRLLAAAQPAGAACELPGRIRAE 316

Query: 311 RRANFLWIT 319
           RR   L + 
Sbjct: 317 RRGEMLVLE 325


>gi|310821984|ref|YP_003954342.1| tRNA(ile)-lysidine synthetase [Stigmatella aurantiaca DW4/3-1]
 gi|309395056|gb|ADO72515.1| tRNA(Ile)-lysidine synthetase [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 83/332 (25%), Positives = 130/332 (39%), Gaps = 32/332 (9%)

Query: 4   SPIESVRFFVRSL--------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
            P  + R   R+L        +    +L+AVSGG DS  LL+    V   R    I    
Sbjct: 3   RPRRATRLICRTLEASFRSVGLAHRSVLLAVSGGVDSTALLLGTALV---RERLGILVEV 59

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
            ++DH LR  A +EVR V  + +R ++   V S    K   GL   AREARYA +S+   
Sbjct: 60  ATLDHGLRPEAMEEVRAVERLAARQKMICHVRSLHV-KEGPGLEVRAREARYAALSQLCS 118

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 I TAHT  DQ ET+ MR  R  + +G        T +      + RP L   RE
Sbjct: 119 ERKLAAIATAHTASDQAETLLMRLARGTSLRGA-------TGITSARGVLVRPLLALTRE 171

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-------LKMKKFQDLRV 228
            + +FL ++   +  DP N D RF R R+R  V      A+            +      
Sbjct: 172 QVEAFLGEQEEGFAVDPMNADPRFLRARIRHHVLPALTQAVGYPVTERLASFARLAAEDE 231

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
            +  ++A      L      + A+    L +          ++ A       +    ++E
Sbjct: 232 ALLQSLAGAAWDRLRGSGEGLDAVGVRALELPLRRRVLARLLAEARA-----VVDAATLE 286

Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
           RV+  ++ G+   +S   + +      +   R
Sbjct: 287 RVLAAVEGGRSATLS-HGLQLRASGGLVRCVR 317


>gi|86748940|ref|YP_485436.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           HaA2]
 gi|86571968|gb|ABD06525.1| tRNA(Ile)-lysidine synthetase-like [Rhodopseudomonas palustris
           HaA2]
          Length = 346

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 122/286 (42%), Gaps = 12/286 (4%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E+   F      PA I++AVSGG DS+ L+         R  G      +++DH L
Sbjct: 9   ISAREASSLFADWKAVPA-IVLAVSGGPDSLALMWLAARWRKARKRGP-ALFVVTIDHGL 66

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  A  E R V      L + H  + W   KP TGL AAAR ARY L+++ AK + A  I
Sbjct: 67  RPEAAREARSVKQFARTLGLPHRTLRWTGDKPATGLPAAARAARYRLLAKAAKAVGAAHI 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           MTAHT DDQ ETV MR  R       GL+ M      D    + RP L   ++ + + L 
Sbjct: 127 MTAHTRDDQAETVLMRLSRGSGI--AGLAAMPRETARD-GAVLVRPLLDVSKQRLVATLD 183

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML----I 238
           +  I +  DPSN D RF R R+R  +  +       +       R     A   L     
Sbjct: 184 RAKIGFAVDPSNADPRFTRPRLRELMPLLAAEGCDSRNLARLAARAARAEAALELLVDGA 243

Query: 239 PKYLTVHMRSIIAISQD---ILNIDSTLLFYLLRVSAAICGGQISL 281
            ++L V        S D      +++ +   LL  +    G +   
Sbjct: 244 ERFLAVRSAGHPPQSFDASVFYALNAEIRIRLLLRAIGRVGREGRP 289


>gi|332298400|ref|YP_004440322.1| tRNA(Ile)-lysidine synthase [Treponema brennaborense DSM 12168]
 gi|332181503|gb|AEE17191.1| tRNA(Ile)-lysidine synthase [Treponema brennaborense DSM 12168]
          Length = 489

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 126/336 (37%), Gaps = 37/336 (11%)

Query: 15  SLVYPAHILV-AVSGGSDSMGLLIALHSVLS----------DRSFGKIKFSAISVDHCLR 63
            L  P  I+   VSGG+DSM LL A   +            +      +F  I+VDH +R
Sbjct: 30  ELFRPGSIVAFGVSGGADSMALLCASVRIRESLYSASCTPGENDTASARFRVITVDHNIR 89

Query: 64  --ETAKDEVRYVSDVCSRL-----RIAHS---VVSWKNSKPQTGLMAAAREARYALISEH 113
             E +  +  +V + C  L     R+A      V     + + GL  AAR  RY +    
Sbjct: 90  PPEESGGDAAFVRNFCETLPSTDCRVAVFERGAVERLARERRRGLEEAARSLRYGIFESD 149

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+   A +I  AH  +DQLET+ +R  +  +           + +        RP L   
Sbjct: 150 ARQTGAAVICLAHNRNDQLETLLLRFLQGSS---------AASGIPRCREPFVRPLLDIG 200

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           R DI  +L    +    D +N D+R+ R + R  +  + L++L            +    
Sbjct: 201 RADILRYLEILAVPHRTDATNFDNRYLRNKCRNELVPV-LNSLVPGWDTAVLSGAEKAAE 259

Query: 234 VAMLIPKYL-----TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
            A+ I              S+   ++      + +   L+  +  +   +  +P Y  + 
Sbjct: 260 DAVFIDAAADSCSWRSDGDSLCMDARTFRLQAAAIKRRLIYRAFDVLETETRIP-YAFVR 318

Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
           R+        R  VS G + +D     L + +  ++
Sbjct: 319 RICRAGGGEHRFSVSAGGITVDSDGVVLCLRKTEKD 354


>gi|303290410|ref|XP_003064492.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454090|gb|EEH51397.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 203

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 11/199 (5%)

Query: 14  RSLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +V    ++VA VSGG DS+ LL  L  +  + +   +    +  +H  R  +++E  +
Sbjct: 12  HDIVRRGDVVVACVSGGPDSVALLHLLRELSDEWN---LAVHVLHCNHGKRSASEEEETF 68

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V ++C RL +   V   +     +     ARE R       A+ ++A +I+ AH +DDQ+
Sbjct: 69  VVEMCERLGVDVHVRRPEAPWGSSHFQERAREWRRKEARALARDVDARVILQAHHWDDQV 128

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ ++  R     G  LS +   +   +N  + RP L CR++++  +L  R +    D 
Sbjct: 129 ETILLKILR-----GCHLSNIKGMM--YVNGDVGRPLLDCRKDELVRYLRARGVDSRVDE 181

Query: 193 SNTDDRFERVRVRRFVRDI 211
           SN D  F R ++R  +  +
Sbjct: 182 SNDDATFSRNKIRHELVPL 200


>gi|119953563|ref|YP_945773.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia turicatae 91E135]
 gi|119862334|gb|AAX18102.1| tRNA(Ile)-lysidine synthetase TilS [Borrelia turicatae 91E135]
          Length = 439

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 27/223 (12%)

Query: 1   MF----LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           MF    L+ IES  F+ ++ +    ++VA SGG+DS  LL++L   L++         A+
Sbjct: 2   MFWNNILTKIES--FYFKNSLTKEKVIVAFSGGADSTTLLLSLKEYLNN------NIVAL 53

Query: 57  SVDHCLRETAKD--EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYA 108
              H +R   +   E+ ++   C+   I   +      +  K+ +    +   AR+ RY 
Sbjct: 54  YFAHYIRSDFEQNLEIEHIKKFCNFYSITFQIKRCSVDIKRKSRQLGMSVEELARKYRYD 113

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + E      A+ I  AH  +DQ ET+ MR  +     G  LSG+        N  I RP
Sbjct: 114 ALLESFIENGASYIALAHNQNDQFETLVMRFFQGSFLDG--LSGIPVI-----NGNIIRP 166

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
            +   REDI  FL   NI +  D +N +D + R R+R  +  +
Sbjct: 167 LIEVSREDIEKFLSLNNIVYSVDSTNREDLYLRNRIRNNLMPV 209


>gi|296122267|ref|YP_003630045.1| tRNA(Ile)-lysidine synthetase [Planctomyces limnophilus DSM 3776]
 gi|296014607|gb|ADG67846.1| tRNA(Ile)-lysidine synthetase [Planctomyces limnophilus DSM 3776]
          Length = 375

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 126/342 (36%), Gaps = 34/342 (9%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLI------ALHSVLSDRSFG-KIKFSAISVDHC 61
           V+  V S    + +++AVSGG DS+ LL        L     D  F  K  +     +H 
Sbjct: 28  VKSCVSSKRESSRLVMAVSGGIDSLALLHGFLWVSQLDEWRRDHGFPEKSDWLIAHFNHQ 87

Query: 62  LRE-TAKDEVRYVSDVC--SRLRIAHSVVSWKNSKPQTGL------MAAAREARYALISE 112
           +R   + ++  +V  +    +L +       +  +    +        A R +RY  +  
Sbjct: 88  VRGKASDEDAEWVKQLAVQEQLHVRIGDRQSEAGQGAGEIDHASISEEALRRSRYDFLRR 147

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A    A  I+ AH  DDQ ETV     R  +    GL+GM  +  +  +L + RP L  
Sbjct: 148 VAGEHQAKCIVLAHHADDQAETVLHHLLRGSSF--SGLAGMRRSQPFKPSLTLERPLLSL 205

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------------DLHALYLK 219
            +  +R FL++    W ED +N +  + R  +R+ V                   +L   
Sbjct: 206 NKSTLRQFLVEIGQDWREDGTNNETVWTRNALRQLVLPALDDALIKMGIQRTSAQSLLQL 265

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
            K  Q++   + N    L+ + +         ++               ++       + 
Sbjct: 266 AKHSQEVETLLQNLADELLKESVLEGSLGKFQVAPWGKRQPIIQREAFKQIWIRNQWPRK 325

Query: 280 SLPGYRSMERVMLFLKSGKRGCV--SIGRVVIDRRANFLWIT 319
            L     +ER+  FL   K+       G + + RR ++  +T
Sbjct: 326 GLAARH-LERLCEFLGEYKQPLSGDFPGGIRMTRRRDWFSLT 366


>gi|225010841|ref|ZP_03701309.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-3C]
 gi|225005049|gb|EEG43003.1| tRNA(Ile)-lysidine synthetase [Flavobacteria bacterium MS024-3C]
          Length = 442

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 51/236 (21%), Positives = 92/236 (38%), Gaps = 20/236 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVCS 78
           +  L+A SGG DS+ L               + F+    +  LR  A   + ++V+++  
Sbjct: 19  SPFLLACSGGVDSVVLAHLCSQC-------GLTFALAHCNFNLRGAASTADAQFVANLAL 71

Query: 79  RLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L +     S+       K +  +   AR  RY    +  KT N   ++TAH  +D LET
Sbjct: 72  ELGVPVFQTSFDTNAYIKKHKVSIQMGARTLRYNWFDKLIKTHNYQYLLTAHQREDALET 131

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +   R    +G  L G+ +   Y     I RP +   +  + +F  + +I W ED SN
Sbjct: 132 MIINLSRGTGIEG--LLGIPEKRDY-----IRRPLICFAKAALLAFANENHIQWREDSSN 184

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
               + R ++R  V  +        ++     +  +    + L   YL    +   
Sbjct: 185 DSTDYLRNKIRHEVLPLMADLHPTALENMIQTQSHLKER-SQLASLYLEQLKKEFF 239


>gi|152991221|ref|YP_001356943.1| tRNA-lysidine synthase [Nitratiruptor sp. SB155-2]
 gi|151423082|dbj|BAF70586.1| tRNA-lysidine synthase [Nitratiruptor sp. SB155-2]
          Length = 329

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/278 (21%), Positives = 98/278 (35%), Gaps = 21/278 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L+     L+A S G DS  L   L           I F    VD+ LR  +KDEV Y  
Sbjct: 7   DLLQGKKNLLAFSAGIDSTALFFLLLE-------RNIDFDIAIVDYGLRSQSKDEVAYAV 59

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++  +              P   +   AR  RY    E  +      ++TAH  +DQLE 
Sbjct: 60  ELAKKYTKKIYTKQVTIKPP--SVEEKARNVRYQFFDEIIQQEGYHNLLTAHQLNDQLEW 117

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             M+  +        L GM D +       I RP L  ++ +++S+L  + I +  D SN
Sbjct: 118 FLMQLGKGAGL--CELVGM-DIVTNRKGYKIVRPLLFVQKSELKSYLETKKIPYYIDESN 174

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
             D + R  +R    D  +      +KK     ++    +   I  +    +        
Sbjct: 175 LQDSYFRNYIRHNFGDPFMKRFGDGIKKSFHYLLEDKKILEEKIQIHSYKELYFATNTHN 234

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
           D +N    +L  L +           L      E ++ 
Sbjct: 235 DYMN--KRILDRLFKKLG-------YLLSSAQKEEILR 263


>gi|71062418|gb|AAZ21421.1| cell cycle protein mesj [Candidatus Pelagibacter ubique HTCC1062]
          Length = 297

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 122/292 (41%), Gaps = 9/292 (3%)

Query: 36  LIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ 95
           +  L    S ++  K+KF    VDH LR  +  E   V  +  ++ I   V+ WK  KP 
Sbjct: 1   MAYLAKCYSIKNKIKVKFFL--VDHRLRNESTKEATLVKKILQKIGITCKVLIWKGKKPS 58

Query: 96  TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD 155
             + + AREARY+L+S+  K  N   ++  H  +D +E   +R  R     G+ +S    
Sbjct: 59  RNIQSLAREARYSLLSKECKKNNIKYLLLGHHSNDLVENFLIRVVRGSGLNGL-VSFNKS 117

Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-----RD 210
               D +L I RP L   + D+ +        + +DPSN ++ ++R R+R  +       
Sbjct: 118 VKYKDEDLNILRPLLNLEKNDLINISKIVFKFFIKDPSNINEIYKRTRIRTLLEFLAKEG 177

Query: 211 IDLHALYLKMKKFQDLRVKVNNAV-AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
           +DL  L L +   +D    +   V   L      +  +    +S +  +    ++F  L 
Sbjct: 178 LDLKKLKLTIDNLRDSDKSIKFYVNKNLKDNSTHIKTKDTYILSHNFFDQSHEVVFRSLT 237

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
                 G +      +S+  ++  +       +++G   ++R    + I+R 
Sbjct: 238 FVIQKIGKKYYPVRGKSINELINRIILKTFSKITLGGCFVERVNETILISRE 289


>gi|323165890|gb|EFZ51672.1| tRNA(Ile)-lysidine synthetase [Shigella sonnei 53G]
          Length = 193

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 7/161 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    ILVA SGG DS  LL  L    ++     +   AI V H L   A   VR+ 
Sbjct: 7   RQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN--PGVTLRAIHVHHGLSANADAWVRHC 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            ++C + ++   V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ E
Sbjct: 65  ENICQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCE 122

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           T  +  +R     G+   G            + RP L   R
Sbjct: 123 TFLLALKRGSGPAGLSAMGEVSEFA---GTRLIRPLLARTR 160


>gi|295676870|ref|YP_003605394.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1002]
 gi|295436713|gb|ADG15883.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1002]
          Length = 490

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 133/413 (32%), Gaps = 36/413 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE++   +  L   A I +A SGG DS  LL     V      G  +  A+ V H L   
Sbjct: 14  IEALGVALSGLDPAARIALAFSGGVDSSVLLDVAVRVA-----GPSRCVALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +         +         S+ P   + AAAR+ARY  +         + +  
Sbjct: 69  ADAWLAHCEAFARERGVEFDARRVDVSRSPGVSIEAAARDARYRALDAMCAAHGISTLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+       ++    +    RP L   R  +  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PGSLPTGASTTRMRPLLHLLRAQLEDYASAR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            + W +D SNTD R+ R  +R  V  + L   +   +           +   L+      
Sbjct: 188 KLRWIDDESNTDTRYARNALRHQVIPV-LAVHFPGFRDALARTAAHAASAQRLLDTLARA 246

Query: 245 HMRSIIAISQDILNIDST----------LLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
            M          L  D            LL Y +R    +      +       R +   
Sbjct: 247 DMEGASRDEGRALAHDVLLALDDDRALNLLRYWMRTLGFVAASSARVADALRQLREVGAG 306

Query: 295 KSGKRGCVSIGRVVIDRRANFLW---------------ITRAVRNLPTLILYPEETTVWD 339
           + G R  +      +      ++               + R +  L            W 
Sbjct: 307 QDGHRLRIDHAGHALRSYRGLVYWEAGDSSEPADETALVEREISELAWQGQEVWHLPQWR 366

Query: 340 GRYQFQNLSDSLIQIGPQSYRKADVPSGI---PPIIAQRALSSMPSKEGGKPL 389
           G   F  +  ++      +   A +   +   P  + QRA  S+ ++ GG+ +
Sbjct: 367 GTLVFAVVDAAVPSDVADAAHDAPLDEALDTVPVSVLQRASLSVRARRGGERM 419


>gi|149186936|ref|ZP_01865245.1| ATPase [Erythrobacter sp. SD-21]
 gi|148829445|gb|EDL47887.1| ATPase [Erythrobacter sp. SD-21]
          Length = 325

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 108/250 (43%), Gaps = 16/250 (6%)

Query: 1   MFLSPIESVRFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54
           M L+P E V  F + L           + +A SGG DS      L  +L           
Sbjct: 1   MALAP-ELVERFRQDLARVWTLDEGEKMGIAFSGGPDS------LALLLLAVEALPGSVE 53

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
           A +VDH LR  + +E R  + +C  L + H  +S     P   + A AR ARY  ++E A
Sbjct: 54  AATVDHGLRAESAEEARNAARICEALGMPHETLSVTI--PHGNVQAEARHARYEALAEWA 111

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +   I TAH  DDQ ET  MR+ R     G+       T L + +L + RP L  RR
Sbjct: 112 ERRSLDYIATAHHADDQAETFLMRANRSSGLSGLAAV-RAATSLGEGDLIVLRPLLPWRR 170

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +             DPSN D+ F+RVR+R+ + ++D   +       + L    ++  
Sbjct: 171 SALEDIARDSGFPVAADPSNLDESFDRVRMRKGLAEVDFIDVEGLAGSARYLAEMQDDID 230

Query: 235 AMLIPKYLTV 244
            M + +++  
Sbjct: 231 GMALEEWVRA 240


>gi|269123409|ref|YP_003305986.1| tRNA(Ile)-lysidine synthetase [Streptobacillus moniliformis DSM
           12112]
 gi|268314735|gb|ACZ01109.1| tRNA(Ile)-lysidine synthetase [Streptobacillus moniliformis DSM
           12112]
          Length = 397

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 50/309 (16%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF + IE  +   ++      IL+A S G DS+ LL     +L  +    ++     V+H
Sbjct: 1   MFRNFIERNKLIEKN----DKILIAFSAGPDSVFLLE---KLLEIKDEYNLQLHLGYVNH 53

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R+    ++  V  + ++  + +S++  K  K        ARE RY+ +S+  K I  T
Sbjct: 54  NFRDDVHKDMELVKKIANKYNLEYSILDIKLEKFT---EEKARELRYSALSDLKKRIKFT 110

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I T H   D  ET+  R  R     G GL G+    +   +  I RP L   +++I   
Sbjct: 111 KIATGHNKTDNAETIIFRIIR-----GTGLDGLEGIRIKRDD--IIRPILYISKDEI--- 160

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           L Q    +  D +N ++ + R ++R  V  I                      +A +  K
Sbjct: 161 LKQVYNEYVIDKTNLENNYSRNKIRNLVFPI----------------------LAEINSK 198

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           Y+     +I+ I ++I+NI+     Y+L     +    ISL   + +E++   L   +  
Sbjct: 199 YID----NIVKIHKNIININDEKYEYILNK---LNEKNISL-NTKKIEQIYNILDKNESK 250

Query: 301 CVSIGRVVI 309
            + +G   I
Sbjct: 251 IIDLGNEYI 259


>gi|194289326|ref|YP_002005233.1| tRNA(ile)-lysidine synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193223161|emb|CAQ69166.1| tRNA(Ile)-lysidine synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 468

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 126/323 (39%), Gaps = 15/323 (4%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS+ LL A  + ++    G  +  A+ V H L+  A +  R+ + +C++ ++ + 
Sbjct: 32  LSGGRDSVALLHAARAAVAQAGDGA-RVVALHVHHGLQAEADEWDRFCAALCAQWQVGYF 90

Query: 86  VVSWKN-SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
           V           G+ AAAR ARYA ++       A L++ AH  DDQ+ETV +R  R   
Sbjct: 91  VRRVSVRPAAGEGVEAAARRARYAALAAMCADSGARLLLFAHHQDDQVETVLLRLFRGAG 150

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
             GM        +     + + RP+L   R  I  +     + W +DPSN D R+ R  +
Sbjct: 151 VAGMAGMPAMRPLDPRSGVMLLRPWLDEPRAGIEDYCAANALRWVDDPSNADGRYARNAL 210

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD--------- 255
           R+ +    L A +  +                LI +  T  + +++   +D         
Sbjct: 211 RQQLP--ALQAAFPALAANVVQAAAHFAQAGALIDQLATTTLATLVRAGRDPDTLSELDL 268

Query: 256 --ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
             +  +       +LR+     G +       +  R  L   +G    ++   +V+ R  
Sbjct: 269 PGLRALPGAQADAVLRLWLRDLGVRAPSTARLAAMREQLVAHAGGEPAIAHEGLVLRRFR 328

Query: 314 NFLWITRAVRNLPTLILYPEETT 336
           + +             +  +   
Sbjct: 329 DRVLACVPPPAAAPAAVLLDWRG 351


>gi|313664903|ref|YP_004046774.1| tRNA(Ile)-lysidine synthetase [Mycoplasma leachii PG50]
 gi|312949767|gb|ADR24363.1| tRNA(Ile)-lysidine synthetase [Mycoplasma leachii PG50]
          Length = 401

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 122/254 (48%), Gaps = 16/254 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                L+A+SGG DS+ LL  +  ++              V++  R  + ++ + V+++C
Sbjct: 8   KDKKYLLAISGGPDSVFLLCNIVKIIDS-----TNLIVCHVNYNFRYDSINDQKIVTNLC 62

Query: 78  SRLRIAHSVVSWKNSKP--QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +  +   +++        +    + AR  RY   ++ AK  +   ++ AH F+D +ET 
Sbjct: 63  KKFDLKLEILNINKDYSLLKENFESWARFQRYDFFNKIAKKYHIYNLLVAHNFNDLIETY 122

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++ QR+      GL     T+ +  +L + RP L  ++ +I  +L    IS+  D +NT
Sbjct: 123 LLQLQRNNLVDYYGL----KTVSHYKDLVVYRPLLDIKKSEILDYLKMNQISYAIDSTNT 178

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-RSIIAISQ 254
           D +++R ++R  + +    ++++ +K   D+  K    +  ++  YL  ++    + +++
Sbjct: 179 DIKYQRNKIRSILDE----SIFINIKNQIDIDNKKLETIKKIVNNYLEHNLINKELILNK 234

Query: 255 DILNIDSTLLFYLL 268
           ++  ++S ++  ++
Sbjct: 235 ELFLLESNIIKRII 248


>gi|68487427|ref|XP_712412.1| hypothetical protein CaO19.2137 [Candida albicans SC5314]
 gi|68487717|ref|XP_712269.1| hypothetical protein CaO19.9684 [Candida albicans SC5314]
 gi|46433643|gb|EAK93076.1| hypothetical protein CaO19.9684 [Candida albicans SC5314]
 gi|46433797|gb|EAK93226.1| hypothetical protein CaO19.2137 [Candida albicans SC5314]
          Length = 483

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 149/415 (35%), Gaps = 77/415 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F   ++  R F  +   P  + VA+SGG DSM L   L          K +  AI++DH
Sbjct: 7   LFRKSLD--RLF--NGNAPKKVAVALSGGPDSMLLTWFLSQC-------KFEIYAITIDH 55

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAK 115
             R  +  E   V +      + H + S       +          AR  RY  +++   
Sbjct: 56  KYRPESSREALSVYERVKNWNLNHIIKSLDYPAGVDPTKLNNFEEIARGKRYEAMAQVCY 115

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------------ 163
             +  ++   H  DDQLET   R Q + +  G+  +     +    +L            
Sbjct: 116 DKDIPVLFLGHHRDDQLETFIQRLQGNSSIFGLAGTHKVSPLPISKDLSPTSALFNQTSQ 175

Query: 164 -WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDL------HA 215
             I RPF    ++DI       NI++  DP+N D     R  +R  + DI        H+
Sbjct: 176 VRILRPFWDYDKQDILETCQLNNIAYVTDPTNKDVSLTRRNYLRHLINDIIPAKNNQSHS 235

Query: 216 LYLKMKKFQ--DLRVKVNNAVAMLIPKYLTVHM---------------RSIIAISQDILN 258
            YL + K Q  D   K      M   + + +                    +   +  L+
Sbjct: 236 PYLLIDKSQLIDSHTKCLEFATMFENRAMALSESLQSSGLIKEFPALGSLQVKFPRQCLD 295

Query: 259 IDSTL--LFYLLRVSAAICGGQISLPGYRSMERVML-----FLKSGKRGCVSIG--RVVI 309
             + +    +L R+       +     Y  +ER ++     FL+ G+ G   +    +V 
Sbjct: 296 QTNGIVTSRFLYRILHPYSTLKHYHWAYAKLERQLIPRITKFLEQGQSGTFKLTMMNLVF 355

Query: 310 DRRAN------FLWITR---AVRNLP----TLILYPEET--TVWDGRYQFQNLSD 349
           +   N       + I R     ++ P    TL + PE +   ++D R+  +  S+
Sbjct: 356 EVTNNIQSEYVPIHIYRCPITTKDWPSMQETLTVSPEWSEWKLFDSRFWLRARSN 410


>gi|323436099|ref|ZP_01050432.2| PP-loop family protein [Dokdonia donghaensis MED134]
 gi|321496414|gb|EAQ38831.2| PP-loop family protein [Dokdonia donghaensis MED134]
          Length = 404

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 108/295 (36%), Gaps = 34/295 (11%)

Query: 35  LLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK 93
           LL+ L           +       +  LR   +  +  +V   C    I   + S+  S 
Sbjct: 2   LLLLLCRQA------GLTIRVAHCNFNLRGVESDGDQAFVESYCKLHNIPIYIKSFDTSA 55

Query: 94  ----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149
                +T    AARE RY    E + T     I+TAH  +D+LET  +   R    KG+ 
Sbjct: 56  YAKIEKTSTQIAARELRYQWFKELSATEGLDYILTAHHLNDELETFLINLGRGTGVKGL- 114

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
                 T + ++N  + RP L   R+ I+ + LQ  ++W ED SN  D + R  +R    
Sbjct: 115 ------TGIPEINERVVRPLLPFSRKRIKEYALQEKLAWREDSSNATDNYVRNHLRHHAI 168

Query: 210 DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR------SIIAISQDILNIDSTL 263
              + A    ++  Q  +  +     +L    +++          +  I+   L      
Sbjct: 169 PSMVAAQPGILQGLQTTQQHLRQTDKLLAIYTVSLRKAYVTTRDGLQVINVPALKKHEEP 228

Query: 264 LFYLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFL 316
              L ++             + +   V  +L  +SGK+      R+V DR    L
Sbjct: 229 QAVLYQLL--------HPYNFTAWSDVYELLDAQSGKQIFSETHRLVKDRDVLLL 275


>gi|26553599|ref|NP_757533.1| cell cycle protein MesJ [Mycoplasma penetrans HF-2]
 gi|61216654|sp|Q8EWQ7|TILS_MYCPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|26453605|dbj|BAC43937.1| predicted cell cycle protein MesJ [Mycoplasma penetrans HF-2]
          Length = 295

 Score =  172 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 111/297 (37%), Gaps = 29/297 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
               L+AVSGG DSM LL     ++              V++  RE + ++ + V D C 
Sbjct: 2   KHKYLIAVSGGPDSMALLNKKRHLVEA---------VCHVNYHDREDSDNDEKIVRDYCK 52

Query: 79  RLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +  +   V                L    RE RY    + ++ +    I+ AH  +D LE
Sbjct: 53  KYNLKLFVFDTHKDDVSKYKDINNLQTWYREIRYDFFEKISQELGIKKILIAHQKNDFLE 112

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           + YM   ++     +G+           +L + RP L   ++ +  +   +NI +  D +
Sbjct: 113 SAYMSLNKNKKNLFLGI----RRKSKFRSLILIRPLLNKTKKSLEQYCRSKNIEFVIDYT 168

Query: 194 NTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N  DR+ R  VR+ + + D       YLK+K F    +     +      ++       I
Sbjct: 169 NFWDRYSRNVVRKMMAEWDKKTFQKFYLKVKWFNLKNMFFIKLLDSKFNNWIKQDF--DI 226

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
                I N     L YL      I       P    +E+++ F+   K G V   R+
Sbjct: 227 NYFLKIKNNYKESLIYLFLNHIGIK------PNENKIEQIIEFINKNKNGSVKKYRL 277


>gi|239500682|ref|ZP_04659992.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii AB900]
          Length = 418

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 115/271 (42%), Gaps = 13/271 (4%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L++ + +    V+   + L I + +   + +     L A AR+ARY    
Sbjct: 8   KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQIAN--GNLEAQARQARYQAYQ 65

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +H +     +++ AH   DQ ETV +R        G+      D   Y  ++ I RPFL 
Sbjct: 66  QHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAAMQAID---YRKDMTIWRPFLD 120

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             RE I  + +Q  + + +DP N D  ++RV  R  +    L + + KM++       + 
Sbjct: 121 LTREQIALWAVQLEVKYIDDPMNYDTHYDRVWCREALWP-FLTSRFPKMQQALSRTSYLM 179

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMER 289
              + ++ + L    +   +     L   S L F   R  +SA + G     P +  +ER
Sbjct: 180 QDASEILEEVLKDDWQYSGSADYLDLTKLSELSFARQRQLLSAWMKGQGQYRPAFEMVER 239

Query: 290 V---MLFLKSGKRGCVSIGRVVIDRRANFLW 317
           +   ++  KS  +  +   +    R  N L+
Sbjct: 240 LRAEVIESKSDAQAALHWNQFYYVRYQNILY 270


>gi|184201576|ref|YP_001855783.1| putative tRNA(Ile)-lysidine synthase [Kocuria rhizophila DC2201]
 gi|183581806|dbj|BAG30277.1| putative tRNA(Ile)-lysidine synthase [Kocuria rhizophila DC2201]
          Length = 359

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 67/306 (21%), Positives = 110/306 (35%), Gaps = 23/306 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  +L+  SGG+DS+       +    +  G  +  A+ VDH L++ + +     +   
Sbjct: 22  APPLVLLGCSGGADSL---ALAAAAAHLQRRGTCRVGAVVVDHQLQDGSGEVAHRAAQTL 78

Query: 78  SRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             L +    V     ++  TG   AAR ARY           A  ++  HT DDQ ETV 
Sbjct: 79  RGLGLDPVHVERVHVTRRGTGPEMAARLARYEAFRSVVARTGAAAVLLGHTRDDQAETVL 138

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R    +   LSGM +  + D  +   RP L   R +  +      +    DPSN D
Sbjct: 139 LGLTRGSGTR--SLSGMPERRVED-GVLYLRPLLNVTRAETETVCAAEGLEPWLDPSNAD 195

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL------------TV 244
               R R+R  V       L   + +       V  A A  + +                
Sbjct: 196 TALTRSRIRHEVLPHLEAQLGPGVGRALARTASVLGADADYLEEQAAAAYDAALLAPSRA 255

Query: 245 HMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF-LKSGKRGCV 302
                + +   +L    + L   +L  +    GG+   P +  +  +  F L  G+ G V
Sbjct: 256 EPEHAVVLDGAVLQATPAALRRRVLARACVAAGGET--PTFERLGALEDFALGHGEAGPV 313

Query: 303 SIGRVV 308
            +   V
Sbjct: 314 QLAGKV 319


>gi|332977368|gb|EGK14150.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Psychrobacter sp. 1501(2011)]
          Length = 523

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 116/337 (34%), Gaps = 40/337 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +  +    I +A SGG DS+ L      +        +    + V+H +++        V
Sbjct: 19  KRQLLGRRIWLACSGGRDSLSLAHLCQQLFEAGKLPFLP-QLLHVNHGMQQANDIWAEQV 77

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           S+   + ++   V+     K        AR+ARY  +       +  +++  H  DDQ+E
Sbjct: 78  SNWAKQNQMPCRVLEIDLVKKT---EQEARQARYEAMMGVM--NHNDVLILGHHQDDQVE 132

Query: 134 TVYMRSQRDYAEKGMGLSG-------MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T+ MR        G+           M +      ++ + RP L   RE I  +     +
Sbjct: 133 TLLMRLFNGAGANGLSGMKEWSTKQSMANDYRCQKSIVLWRPLLSVSREQITEYANHNQL 192

Query: 187 SWCEDPSN---------TDDRF--ERVRVRRFVR-------DIDLHALYLKMKKFQDLRV 228
           ++ +DP+N          +D+   +R  +R  +             A+    +  QD  +
Sbjct: 193 AYIDDPTNIASPPIDHIVEDKTLNDRAWLRSVLLPHITQRYPKAREAMARTGQLMQDAHI 252

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            +N      +             +    + ++ +     ++    A    ++  P  R +
Sbjct: 253 ILNEQSTADLSNVSIATNSWCAILDIAQLNDLSNARQSSVIHSWLAPTAAEL-PPSKRLV 311

Query: 288 ERVMLFL-KSGKRGCVSI------GRVVIDRRANFLW 317
           E V+    ++      S+       +  I R  N L+
Sbjct: 312 EDVLALAQRTDANHQTSLYWDSGVYQYQIRRYQNKLY 348


>gi|203284682|ref|YP_002222422.1| cell cycle protein [Borrelia duttonii Ly]
 gi|201084125|gb|ACH93716.1| cell cycle protein [Borrelia duttonii Ly]
          Length = 439

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 24/234 (10%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-- 68
           F+ R+L+    ++VA SGG DS         +L+ + +      A    H +R  ++   
Sbjct: 14  FYKRNLLTKEKVIVAFSGGPDSTV------LLLNLKKYLNNNIVAFYFAHYIRSKSEQDL 67

Query: 69  EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           E+ +V   C+   I   +      +  K  +    +   AR+ RY  + E     NA+ +
Sbjct: 68  EIEHVKKFCNLYDIVCQIKKCDVDIKIKAKQLGISIEELARKYRYNALLEALNENNASYV 127

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AH  +DQ ET+ MR  +     G          +  +N +I RP L   RE+I  FL 
Sbjct: 128 ALAHNKNDQFETLIMRFFQGSFLDGF-------VGIPVINNFIIRPLLEVSREEIEKFLS 180

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNA 233
             NI +  D +N +D + R +VR  +  +           +K+  D   ++ N 
Sbjct: 181 VNNIVYSIDSTNHEDLYLRNKVRNNLVPVIKKIFKGYEKGLKRISDFSRELTNY 234


>gi|220904230|ref|YP_002479542.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868529|gb|ACL48864.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 377

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/292 (23%), Positives = 113/292 (38%), Gaps = 24/292 (8%)

Query: 6   IESVRFFVRSLVYP--AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +E  RF +  L  P  + +++A+SGG+DS  L   L  ++       +K   +S++H LR
Sbjct: 19  LEVERFCLHHLALPRGSSLVLALSGGADSTALAAILSLLVPRL---HLKLRGLSINHGLR 75

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
             AK +  +    CS L +  +V         ++ + G   A R  RYAL+ E  +T  A
Sbjct: 76  PEAKADAAHAQKTCSILGMPCAVREADVQGLAARCRMGEEEAGRTLRYALLEEERQTSGA 135

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I   H  +D  E + +R  R      +G          D    + RP L C    ++ 
Sbjct: 136 HFIALGHHREDLSEDILLRLVRGTGWPALG-----GMPARDDKRRLLRPLLHCAPSALKD 190

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAM 236
            L    + WCED SN    + R R+R  +  +   +  AL   +     L          
Sbjct: 191 LLRHCGLDWCEDASNQSTIYRRNRLRLQILPLLRTENPALDRSLGHLWQLADMDRTYWQE 250

Query: 237 LIPKYLT---VHMRSIIAISQDILNIDST----LLFYLLRVSAAICGGQISL 281
            +   L     HM      +Q  LN  +     L   LLR   A    ++ +
Sbjct: 251 TLDAALRDNPWHMEEAAHDAQAGLNGQARTALTLPRALLRSLPAAARLRLYM 302


>gi|268316527|ref|YP_003290246.1| tRNA(Ile)-lysidine synthetase [Rhodothermus marinus DSM 4252]
 gi|262334061|gb|ACY47858.1| tRNA(Ile)-lysidine synthetase [Rhodothermus marinus DSM 4252]
          Length = 461

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 22/320 (6%)

Query: 31  DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSW 89
           DSM LL  L  +         +     V++ LR   +  +   V   C R R+   V   
Sbjct: 31  DSMVLLEVLRRL-------GYRPVVAHVNYRLRGADSDADEALVRRFCRRHRLPLRVARI 83

Query: 90  KNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147
                  G  + A AR+ RYA     A      ++  AH  DDQ ET+ +   R    +G
Sbjct: 84  DLKVRTGGRAIQATARQVRYAFFRRVALREGIDVVAVAHQHDDQAETLLLNLVRGSGLEG 143

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207
           + L       L   N+W+ RP L   R +I ++     I W ED SN    + R  +R  
Sbjct: 144 L-LGMRPKRRLSRENVWLVRPLLPVSRAEIEAWARAEGIPWREDVSNASLHYRRAVIRHE 202

Query: 208 VRDI----DLHALYLKMKKFQDLRVKVNNA--VAMLIPKYLTVHMRSIIAISQDILNIDS 261
           V  +        +  ++    +L      A  +  L  ++  V      A+  + L +  
Sbjct: 203 VLPLLARHFGPGVAERLAHTAELLRAYYEATFLPDLRRRWQEVANEPDRALRLEPLRMQP 262

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
            +    L + A       +   +R + + +  L++     + + +  I R  + L     
Sbjct: 263 PVWQQRLILEALRRWLPGAPQRHRVVAQALCLLQAQPGRRLELPQGTIWRDRDALRFRPR 322

Query: 322 VRNLPTLILYPEETTVWDGR 341
            R       +P+E  +   R
Sbjct: 323 QRA-----TWPDEGLLEPDR 337


>gi|299067222|emb|CBJ38419.1| tRNA(Ile)-lysidine synthase [Ralstonia solanacearum CMR15]
          Length = 462

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 124/319 (38%), Gaps = 12/319 (3%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +   FV S   P  + VA+SGG DS  LL A  +         ++  A+ + H L+  
Sbjct: 11  VAACAAFVVSGGAPT-VAVALSGGRDSAALLHAAAAWRDAAGVP-VRLVALHIHHGLQAE 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
           A       + + +    A  V   + S     G+  AAREARYA +        ATL++T
Sbjct: 69  ADAWETACARMAASAGAAFRVRRVRVSTDAGRGIEEAAREARYAALDALCAETGATLLLT 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DDQ ETV ++  R     G+    M     ++  + + RP+L   R DI ++    
Sbjct: 129 AHHLDDQAETVLLQLLRGAGLDGLSAMPMA----HERRVTLLRPWLDVPRGDIEAYARAH 184

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKY 241
            ++W EDPSN D R+ R  +R  +  +  H    +    +        A     +     
Sbjct: 185 ALAWVEDPSNGDARYARNALRPLLAGMAGHFPAYRAALARSAAHLAEAAALIEEVAQADL 244

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY-RSMERVMLFLKSGKRG 300
             +     +A+   +  +       +LR   A  G +         +   +L  ++    
Sbjct: 245 ARIAPAGTLAVD-GLAALSGPRQRSVLRAWLAGAGLRAVSSRRLEDLRAQLLGARADGAP 303

Query: 301 CVSIGRVVIDRRANFLWIT 319
           C+ +    + R     WI 
Sbjct: 304 CIRLPGAQVRRYRGQAWIE 322


>gi|90418979|ref|ZP_01226890.1| putative ATPase, PP-loop superfamily implicated in cell cycle
           control [Aurantimonas manganoxydans SI85-9A1]
 gi|90337059|gb|EAS50764.1| putative ATPase, PP-loop superfamily implicated in cell cycle
           control [Aurantimonas manganoxydans SI85-9A1]
          Length = 410

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 100/375 (26%), Positives = 171/375 (45%), Gaps = 17/375 (4%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86
           SGG DS+ L++A  ++    +  + +F   +VDH LR+ +  E RYV+ V +R RI+H  
Sbjct: 2   SGGPDSLALVLAAIALQGTAALPQTRFHIATVDHGLRDASAAEARYVAGVAARFRISHET 61

Query: 87  VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146
           + W        + AAAREARYAL+S+ A+   AT+I+TAH  DDQ ET  M  +R     
Sbjct: 62  LRWDAPARTGNIAAAAREARYALLSDAARRFGATVILTAHHEDDQCETHLMARERGAGV- 120

Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
            +GL+GM        +L ++RPFL    + +++ +    +    DP+N D    RV++RR
Sbjct: 121 -VGLAGMRPVRSLASDLVLARPFLDVAGDRLKASVAAHRLPAVADPTNDDPASRRVQLRR 179

Query: 207 FVR--DIDLHALYLKMKKFQDLRVKV-----NNAVAMLIPKYLTVHMRSIIAISQDIL-N 258
            +    +D  AL  ++   +  R  +     +   AM     L +     + IS++ L  
Sbjct: 180 QIAAGALDRDALRARIAGHRSERDALEAGLGDAIAAMQAAGELRLTDAGTLEISRNALRR 239

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
           +     F  L+ + A  GG+   P   +  R++  L+       ++  V          +
Sbjct: 240 LGDDAAFTFLQRAVAAVGGRGHGPEGPATIRLLDALRGKSDAARTLAGVRAVPGETITLM 299

Query: 319 TRAVRNLPTLILYPEETTVWDGRYQF------QNLSDSLIQIGPQSYRKADVPSGIPPII 372
               R     +       V+DGR+         +    L+  G    R   V   +P ++
Sbjct: 300 REYGRAGIAGLAATAGDLVFDGRFVVDAGAGPSHSGARLVAFGDLG-RGNPVEKTLPVLV 358

Query: 373 AQRALSSMPSKEGGK 387
           A  +L ++P++ GGK
Sbjct: 359 AGDSLVAIPAQLGGK 373


>gi|166154184|ref|YP_001654302.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 434/Bu]
 gi|166155059|ref|YP_001653314.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335429|ref|ZP_07223673.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis L2tet1]
 gi|259533695|sp|B0B969|TILS_CHLT2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|259533707|sp|B0BAU8|TILS_CHLTB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|165930172|emb|CAP03656.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 434/Bu]
 gi|165931047|emb|CAP06610.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 321

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 120/303 (39%), Gaps = 24/303 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL      L+A+SGGSDS+ L+  L S         I F+A+ VD+  RET+  E  
Sbjct: 15  FFSSLDKKKKYLLALSGGSDSLFLMYLLKSRA-------IFFTAVHVDYGWRETSYQEAS 67

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++ +C + +I   +   + + P     +  AAR  RY L     K    + +   H  D
Sbjct: 68  DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET+  R           L GM   ++Y  ++ + RP L   +  I   L    + + 
Sbjct: 128 DQAETILKRVFEGAHLG--NLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQYV 184

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------KFQDLRVKVNNAVAMLIPKY 241
           +D +N ++RF R R+R  +           ++           +LR  ++   A  + + 
Sbjct: 185 QDITNCNERFLRARMRERLFPYLQDVFGKNIRDPLLSLAGDSAELREYLDQQTAPFLLRV 244

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           +      ++ I Q++L       +    V       +  +     ++ V   L +G    
Sbjct: 245 VDNERGKLLPIEQELLKTPFLAKW----VCKQFFLNEGLVASKSFLQTVYDHLMTGSTAR 300

Query: 302 VSI 304
           + +
Sbjct: 301 LRL 303


>gi|50542994|ref|XP_499663.1| YALI0A01760p [Yarrowia lipolytica]
 gi|49645528|emb|CAG83586.1| YALI0A01760p [Yarrowia lipolytica]
          Length = 426

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/363 (22%), Positives = 147/363 (40%), Gaps = 52/363 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + +AVSGGSDSM L       +S       K +A +VDH +R  +  E + V ++ SRL
Sbjct: 11  RLALAVSGGSDSMALAYM----ISQTPGLSEKTTAYTVDHGVRSESSSEAQNVHEIVSRL 66

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I H ++             + R+ARY+ +         + ++TAHT DD +ET  +R  
Sbjct: 67  GINHRILKLDALNDTK--ELSMRQARYSKLIAAMNDDGVSTVVTAHTQDDCIETFVVRML 124

Query: 141 RDYAEKGMGLSGMCDTILYDLNLW--------------------ISRPFLRCRREDIRSF 180
           R       GL+G+   + ++   W                    + RP L   +  +R+ 
Sbjct: 125 RGSGL--FGLAGIQPRVSFNPYTWGGGGIALKQHSRTELASGWKLMRPLLGLTKSHLRNV 182

Query: 181 LLQRNISWCEDPSNTD-DRFERVRVRR------FVRDIDLHALYL--KMKKFQDLRVKVN 231
           L++ NI W EDP+N + +  ER  VR+       +   +  A  +   ++K    R+K  
Sbjct: 183 LVKNNIPWFEDPTNQNVEIAERNLVRKMYYEYPELIPEEFQASNVLRLLEKLNGYRIKCE 242

Query: 232 NAVAMLIPKYLTVHMR--SIIAISQD-----ILNIDSTLLFYLLRVSAAICGGQISLPGY 284
              + +  + L         I +S++     +  +    L  +LR    I      LP  
Sbjct: 243 TEASEVSSRLLAASQSPDGTITLSEEQVKGVLTKLPHDTLQLVLR---NILSPLSPLPDL 299

Query: 285 R-SMERVM-LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPT---LILYPEETTVWD 339
              + R+  L  +       ++  V    R +   ++R V   P+   + L P   ++WD
Sbjct: 300 SLRLHRLRGLTGRFEAGNKFNLAGVDFSLRNDKWQLSREVPRRPSDHVVQLTPGRVSLWD 359

Query: 340 GRY 342
            R+
Sbjct: 360 NRF 362


>gi|255073925|ref|XP_002500637.1| predicted protein [Micromonas sp. RCC299]
 gi|226515900|gb|ACO61895.1| predicted protein [Micromonas sp. RCC299]
          Length = 204

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 10/192 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ VSGG DS+ LL  +  +   R    +    +  +H  R  +++E  +V D+ ++
Sbjct: 21  DRVVLCVSGGVDSVALLHLMVEL---RQEWALDLHILHFNHGKRAESREEEAFVKDLGAK 77

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L +   V     +   +G  A AR  R     +    +   +I+  H  DDQ ETV M+ 
Sbjct: 78  LGVEVHVRRPTKAFDTSGFQAKARAWRRDEAEKLLDAVAGQVILQGHHADDQTETVLMKM 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G  +S +        N    RP L   ++++R +L  R + W ED SN D  F
Sbjct: 138 MR-----GCHVSNIAGMSHRAGNYG--RPLLDVSKDELRRYLTSRALEWREDASNADVAF 190

Query: 200 ERVRVRRFVRDI 211
            R RVR  +  +
Sbjct: 191 LRNRVRAELVPV 202


>gi|76789585|ref|YP_328671.1| TilS [Chlamydia trachomatis A/HAR-13]
 gi|237803272|ref|YP_002888466.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/Jali20/OT]
 gi|237805193|ref|YP_002889347.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311681|ref|ZP_05354251.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 6276]
 gi|255317982|ref|ZP_05359228.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 6276s]
 gi|255349245|ref|ZP_05381252.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 70]
 gi|255503782|ref|ZP_05382172.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis 70s]
 gi|255507463|ref|ZP_05383102.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis D(s)2923]
 gi|123606544|sp|Q3KKJ9|TILS_CHLTA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|76168115|gb|AAX51123.1| TilS [Chlamydia trachomatis A/HAR-13]
 gi|231273493|emb|CAX10409.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274506|emb|CAX11302.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis B/Jali20/OT]
 gi|289525886|emb|CBJ15368.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis Sweden2]
 gi|296435472|gb|ADH17650.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis E/150]
 gi|296436396|gb|ADH18570.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/9768]
 gi|296438255|gb|ADH20416.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/11074]
 gi|296439189|gb|ADH21342.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis E/11023]
 gi|297140756|gb|ADH97514.1| tRNA(Ile)-lysidine synthase [Chlamydia trachomatis G/9301]
          Length = 321

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 120/303 (39%), Gaps = 24/303 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL      L+A+SGGSDS+ L+  L S         I F+A+ VD+  RET+  E  
Sbjct: 15  FFSSLDKKKKYLLALSGGSDSLFLMYLLKSRA-------IFFTAVHVDYGWRETSYQEAS 67

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++ +C + +I   +   + + P     +  AAR  RY L     K    + +   H  D
Sbjct: 68  DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET+  R           L GM   ++Y  ++ + RP L   +  I   L    + + 
Sbjct: 128 DQAETILKRVFEGAHLG--NLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQYV 184

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------KFQDLRVKVNNAVAMLIPKY 241
           +D +N ++RF R R+R  +           ++           +LR  ++   A  + + 
Sbjct: 185 QDITNCNERFLRARMRERLFPYLQDVFGKNIRDPLLSLAGDSAELREYLDQQTAPFLLRV 244

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           +      ++ I Q++L       +    V       +  +     ++ V   L +G    
Sbjct: 245 VDNERGKLLPIEQELLKTPFLAKW----VCKQFFLNERLVASKSFLQTVYDHLMTGSTAR 300

Query: 302 VSI 304
           + +
Sbjct: 301 LRL 303


>gi|117923751|ref|YP_864368.1| tRNA(Ile)-lysidine synthetase [Magnetococcus sp. MC-1]
 gi|117607507|gb|ABK42962.1| tRNA(Ile)-lysidine synthetase [Magnetococcus sp. MC-1]
          Length = 349

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 129/330 (39%), Gaps = 32/330 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
                A +LVAVS G DS  LL  L      R        A   DH LR  AK ++ +V 
Sbjct: 23  QWPLSAPLLVAVSAGVDSSALLHLL------RLCYPGPLQAAHFDHALRPCAKQDLAHVQ 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C++  I   V  W     +  L A AR+ARY  +++ A  + A  I  AH  +DQ   
Sbjct: 77  QQCAQYAIPLHVGHWLPPAQKANLAAQARQARYRFLAQTAYGLKAPFIGIAHHQEDQA-- 134

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYD-------LNLWISRPFLRCRREDIRSFLLQRNIS 187
                      +G GL G+                + + RP L   ++++ S+L    I+
Sbjct: 135 --ETLLERLLLRGAGLKGLSGMRPLAPLPMAEFAQVQLLRPLLPFSKKELTSWLQGEQIT 192

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM---KKFQDLRVKVNNAVAMLIPKYLTV 244
           W EDPSN D R+ R  +R  +    L+AL +     ++  +  + +  A A L    + +
Sbjct: 193 WREDPSNQDLRYTRNHIRHRLLP-SLNALGVGEAIPQRLAETALHLQQADAALQWMVVQL 251

Query: 245 HMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
             +  I   Q+            + + L   LL        G  ++ G R+ E +   L 
Sbjct: 252 AQQLPIEPYQENGLQLPLQPFAELPAELRARLLDHMLHTLVGITAV-GQRAKENLWHHLS 310

Query: 296 -SGKRGCVSIGRVVIDRRANFLWITRAVRN 324
              KR  + +  V + R    L +   +R 
Sbjct: 311 LPAKRWQMRMQGVAVTRVEQRLLVQPVLRA 340


>gi|300742497|ref|ZP_07072518.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa M567]
 gi|300381682|gb|EFJ78244.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa M567]
          Length = 469

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 7/229 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ L               ++  A+ VDH L+  + +     ++  + L 
Sbjct: 128 VLVACSGGPDSLALACIAAHFARR---SDVRVGAVVVDHGLQADSAEVAASTAETLTNLG 184

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +        +  +   G   AAR ARY           A  ++  HT DDQ ETV +   
Sbjct: 185 LHPVLTERVQVPQGSMGPEMAARTARYGAFERAVHNTGARAVLLGHTLDDQAETVLLGLG 244

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +   L+GM    + +  +   RPFL  RR D+ +      ++   DP+NTD    
Sbjct: 245 RGSGTR--SLAGMPPVRI-ENGVTYLRPFLALRRADMLNICEAEGVAPWNDPTNTDQTLM 301

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           R R+R  +       L   +         V    A  +          +
Sbjct: 302 RARIRHTILPFLQEHLGGDVALSLARTAAVAGPDAEYLDALAAAEYARL 350


>gi|126697179|ref|YP_001092065.1| ATPase [Prochlorococcus marinus str. MIT 9301]
 gi|126544222|gb|ABO18464.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9301]
          Length = 336

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 18/253 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +   ++IL++VSGG DSM LL  ++ +   +       S    DH   E +      + D
Sbjct: 29  IPKGSNILISVSGGQDSMTLLTLINDL---KKLHNWSISVWHGDHQWHEKSSLYALELKD 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTF 128
            C    I+ S    + +K        ARE RY  + E AKT+       +   ++T HT 
Sbjct: 86  YCEDKNISFS--YDQANKESISSEEKAREWRYKKLCERAKTLLNTNQQKHNIYLLTGHTS 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D  ET  +   R       GLS +    L +  +++ RP L   RED + F     I  
Sbjct: 144 SDNAETFILNLSRGS--NFAGLSNIESKRLIENQIFLIRPILIFSREDTKQFCNDMKIPV 201

Query: 189 CEDPSNTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            EDP+N+D + +R  VR+ +    ++       ++  F       NN    L  +   ++
Sbjct: 202 WEDPTNSDLKLKRNLVRKKIIPTLEVIYPGCSERINNFSQKMSNYNNERNDL-SELAYLY 260

Query: 246 MRSIIAISQDILN 258
            R +  I +++LN
Sbjct: 261 CRDVKGIDRNLLN 273


>gi|149236285|ref|XP_001524020.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146452396|gb|EDK46652.1| hypothetical protein LELG_04833 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 523

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 17/232 (7%)

Query: 7   ESVRFFVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E +R    SL   P  + + +SGG DSM L   L +        ++K  AI++DH  R  
Sbjct: 10  EVLRRVFGSLENVPTKVGIGLSGGPDSMLLSWLLKTTNEQLMNNRLKIHAITIDHSFRAG 69

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATL 121
           +K E + ++   +   I HS+ S      + K  T     AR  R+  +++         
Sbjct: 70  SKVEAQKLTPTMNNWGIKHSIKSLDYGDADPKLFTNFEEIARIKRFEALNDLCCEQRIPF 129

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLWISRPFLR 171
           +   H  DDQ+ET   R Q + +  G+  +     +            D  +++ RP L 
Sbjct: 130 LFLGHHKDDQVETFVQRLQGNSSIYGLAGTRQVSPLPSSRDLPPLETKDGQVFLVRPLLD 189

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKK 222
             ++DI       NI +  DP+N + +   R  +R+ V  + L  +  K + 
Sbjct: 190 FYKDDIVKTCELHNIPYVIDPTNKNPKLTRRNFLRQ-VFGVTLPHMLNKHEN 240


>gi|203288215|ref|YP_002223230.1| cell cycle protein [Borrelia recurrentis A1]
 gi|201085435|gb|ACH95009.1| cell cycle protein [Borrelia recurrentis A1]
          Length = 439

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 24/234 (10%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-- 68
           F+ R+L+    ++VA SGG DS         +L+ + +      A    H +R  ++   
Sbjct: 14  FYKRNLLTKEKVIVAFSGGPDSTV------LLLNLKKYLNNNIVAFYFAHYIRSKSEQDL 67

Query: 69  EVRYVSDVCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           E+ +V   C+   I   +      +  K  +    +   AR+ RY  + E     +A+ +
Sbjct: 68  EIEHVKKFCNLYDIVCQIKKCDVDIKIKAKQLGISIEELARKYRYNALLEALNENHASYV 127

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AH  +DQ ET+ MR  +     G          +  +N +I RP L   RE+I  FL 
Sbjct: 128 ALAHNKNDQFETLIMRFFQGSFLDGF-------VGIPVINNFIIRPLLEVSREEIEKFLS 180

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNA 233
             NI +  D +N +D + R +VR  +  +           +++  D   ++ N 
Sbjct: 181 VNNIVYSIDSTNHEDLYLRNKVRNNLVPVIKKIFKGYEKGLRRISDFSRELTNY 234


>gi|224436971|ref|ZP_03657952.1| hypothetical protein HcinC1_03315 [Helicobacter cinaedi CCUG 18818]
 gi|313143443|ref|ZP_07805636.1| tRNA(Ile)-lysidine synthase [Helicobacter cinaedi CCUG 18818]
 gi|313128474|gb|EFR46091.1| tRNA(Ile)-lysidine synthase [Helicobacter cinaedi CCUG 18818]
          Length = 414

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 103/263 (39%), Gaps = 23/263 (8%)

Query: 2   FLSPIESVRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           FLSP+ ++R   + L +  +  L+  SGG DS  L   L          KI F    V +
Sbjct: 4   FLSPL-ALRLKEKILPLADSKNLLGFSGGVDSTALFFLLVEY-------KIPFDIAIVHY 55

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R+ A DE+ +   +    +    +      +      + AR  R++   E  ++    
Sbjct: 56  HTRKEADDELSHAQHLAKLYKKHCFISH--APQFSQNFESQARAFRFSFFDEIMQSYGYG 113

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++ AH  +D+ E + M+  R    +   L G        ++  I RP     +++I ++
Sbjct: 114 ALILAHQLNDRFEWLLMQLTRGAGLE--NLLGFESWRNAKISYHIVRPLESISKDEIYTY 171

Query: 181 LLQRNISWCEDPSNTDDRFERVRVR----RFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
             ++ + + ED SN D  F+R   R      +       +   ++  +  + ++N     
Sbjct: 172 CKEKGLKYFEDSSNADLGFKRNAFRVRFANELTREYGRGIAKSLEYLKQDKQRLN----- 226

Query: 237 LIPKYLTVHMRSIIAISQDILNI 259
             P    + +  +  ++QD  + 
Sbjct: 227 -TPSVKRLRLECVARLTQDSKDC 248


>gi|166363410|ref|YP_001655683.1| tRNA(Ile)-lysidine synthase [Microcystis aeruginosa NIES-843]
 gi|166085783|dbj|BAG00491.1| tRNA(Ile)-lysidine synthase [Microcystis aeruginosa NIES-843]
          Length = 324

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 125/312 (40%), Gaps = 19/312 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A +LVA+S G DS+        +L  RS    + +    DH         V +V  
Sbjct: 22  LPKNASLLVALSAGQDSL---CLGQLLLDLRSRWGWQLAIAHCDHRWSSDRGL-VTHVRK 77

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +    ++   +     + P     A AR+ RY  +   A+      ++TAHT  D+ ET 
Sbjct: 78  IAEIWQLPVYI---TTAPPMAETEAKARQWRYQALQTIAQEQGFNYLLTAHTRSDRAETF 134

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R     G  LS +        ++++ RP L   R +  +F   R +    D +N 
Sbjct: 135 LYNLTRGAGSDG--LSALTWLTSLTSDIFLVRPLLNVTRGETFAFCQSRELPIWYDRANE 192

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           + R+ R R+R+ +       L  +++K      ++  A +  +        R +I + Q 
Sbjct: 193 NLRYARNRIRQELLPYLQTNLNPQIEKHLAQTAEILEAESDYLDSIARDIFRQVIDLDQQ 252

Query: 256 ILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSI-GRV 307
            L+      +   +   ++R+  A      S P +  +E V+  +    +    S+ G++
Sbjct: 253 RLDRSPLQILPLAIQRRVIRLFLAQY--LPSSPNFAEVESVVNLITGVNRDATSSLTGKI 310

Query: 308 VIDRRANFLWIT 319
            ++ + N+L+I+
Sbjct: 311 RVEVQQNWLYIS 322


>gi|260943125|ref|XP_002615861.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720]
 gi|238851151|gb|EEQ40615.1| hypothetical protein CLUG_04743 [Clavispora lusitaniae ATCC 42720]
          Length = 463

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 10/244 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +LVA+SGG DSM L   L          K++   +++DH  R+ +  E   V  +  
Sbjct: 20  PGKLLVALSGGVDSMCLTHLLLQYKKLYD-PKLEIHTMTIDHGYRKMSSLEAHEVGRIVQ 78

Query: 79  RLRIAHSVVSW---KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                H +      +N    T     AR  RY         +    ++ AH  +D++ET 
Sbjct: 79  SWGAHHYIHRLSYDRNPSSITNFEEVARTMRYNAFERQCDELGIQALLLAHNLNDRIETF 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTIL----YDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
             R Q +    G+G      T+         + + RP L+  ++ +R   ++  + W ED
Sbjct: 139 LQRLQMNSTLYGLGGLKPRATMPISSKSPQQISVFRPLLQFDKQSLRETCVKSGVLWFED 198

Query: 192 PSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
            +N D     R   R  V +     + L+      L  +        + ++LTV    I 
Sbjct: 199 HTNADLHLTKRNLFRYMVNEYVPQEI-LRRPDLAVLSKESLLKTLNEVDEFLTVLDDRIK 257

Query: 251 AISQ 254
           A+  
Sbjct: 258 ALDD 261


>gi|256829531|ref|YP_003158259.1| tRNA(Ile)-lysidine synthetase [Desulfomicrobium baculatum DSM 4028]
 gi|256578707|gb|ACU89843.1| tRNA(Ile)-lysidine synthetase [Desulfomicrobium baculatum DSM 4028]
          Length = 334

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 112/298 (37%), Gaps = 43/298 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    ++VA S G DS      LH +   R+   +   A    H LR  +  E+ +  +V
Sbjct: 29  LRGTRLVVAYSAGLDSTA---LLHLLHLLRAPLNLTLIAAHAHHGLRPESDRELEHAREV 85

Query: 77  CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           CSRL IA            +    GL   AR+ARYA +    +   A  I TAH  DD  
Sbjct: 86  CSRLSIAFQAAHLDIPSLQAASGRGLEECARQARYAFLESVRQEHQADWITTAHHGDDLA 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E + MR  R     G+G  GM           + RP L   +  +RSFL +    WCED 
Sbjct: 146 EDIVMRLLRGTGWPGLG--GMPGVDPKRG---LLRPLLDWEKNGLRSFLEETGTGWCEDQ 200

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA----------------- 235
           SN      R RVR  +    L  L  +   F    +++                      
Sbjct: 201 SNASPDRTRNRVRHDI----LPLLRRENPSFAKTSMQLWTLAQIDEEYWSQALPLLPAPM 256

Query: 236 ---MLIPKYLTVHMRSIIAISQDILN---IDSTLLFYLLRVSAAI----CGGQISLPG 283
              +L    L VH    + + + IL+       L  +LLR+  A     CG  I  PG
Sbjct: 257 RNFLLASALLDVHQAKRLRLYKTILDSMGPGQVLASHLLRLDTAWMRKNCGRAIQFPG 314


>gi|149280296|ref|ZP_01886418.1| tRNA(Ile)-lysidine synthetase [Pedobacter sp. BAL39]
 gi|149228985|gb|EDM34382.1| tRNA(Ile)-lysidine synthetase [Pedobacter sp. BAL39]
          Length = 461

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 102/281 (36%), Gaps = 31/281 (11%)

Query: 5   PIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           P++  + F+           IL+AVSGG DS+ +     +           F     +  
Sbjct: 3   PLQQFKTFITENHLFETGDKILLAVSGGKDSVLMAHLFKA-------SGHPFGIAHCNFN 55

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR E +  +  +V  +   L +   V  +       +       AAR  RY    +    
Sbjct: 56  LRGEESVRDEHFVKMLGLMLDVPVYVTHFDTKAYAKQHGVSTQMAARTLRYEWFEQLRIE 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               +I  A   DD +ETV +   R     G G+SG+        N  + RP +   R++
Sbjct: 116 RGYQVIALAQHQDDAMETVLLNLTR-----GTGISGLHGIFPRRGN--LIRPLMFLSRQE 168

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI---DLHALYLK----MKKFQDLRVK 229
           I   ++  ++ + ED SN    + R ++R  V  +       L L     +++F D    
Sbjct: 169 IDDLVVAHHLDFVEDSSNLSSNYIRNKIRLKVIPLLREINPGLALTFSENIRRFSDTEQV 228

Query: 230 VNNAVAMLIPKYLTVHMRSII--AISQDILNIDSTLLFYLL 268
           +   V     +       +     ++   L+    LLF LL
Sbjct: 229 LRQVVQEHHERLFVQRNNAFYLPIVALKKLDPARLLLFELL 269


>gi|15605575|ref|NP_220361.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|61216368|sp|O84847|TILS_CHLTR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3329312|gb|AAC68437.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|296437327|gb|ADH19497.1| PP-loop superfamily ATPase [Chlamydia trachomatis G/11222]
 gi|297748968|gb|ADI51514.1| TilS [Chlamydia trachomatis D-EC]
 gi|297749848|gb|ADI52526.1| TilS [Chlamydia trachomatis D-LC]
          Length = 321

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 120/303 (39%), Gaps = 24/303 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  SL      L+A+SGGSDS+ L+  L S         I F+A+ VD+  RET+  E  
Sbjct: 15  FFSSLDKKKKYLLALSGGSDSLFLMYLLKSRA-------IFFTAVHVDYGWRETSYQEAS 67

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++ +C + +I   +   + + P     +  AAR  RY L     K    + +   H  D
Sbjct: 68  DLAALCEQEQIPFILDRPEATDPMDSRDIENAARRYRYELFYRLCKEKCFSGVFLGHHAD 127

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ET+  R           L GM   ++Y  ++ + RP L   +  I   L    + + 
Sbjct: 128 DQAETILKRVFEGAHLG--NLKGMSAQVMYR-DVALLRPLLHIPKHKIVEALDSHQVQYV 184

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------KFQDLRVKVNNAVAMLIPKY 241
           +D +N ++RF R R+R  +           ++           +LR  ++   A  + + 
Sbjct: 185 QDITNCNERFLRARMRERLFPYLQDVFGKNIRDPLLSLAGDSAELREYLDQQTAPFLLRV 244

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           +      ++ I Q++L       +    V       +  +     ++ V   L +G    
Sbjct: 245 VDNERGKLLPIEQELLKTSFLAKW----VCKQFFLNERLVASKSFLQTVYDHLMTGSTAR 300

Query: 302 VSI 304
           + +
Sbjct: 301 LRL 303


>gi|228470511|ref|ZP_04055378.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3]
 gi|228307807|gb|EEK16763.1| tRNA(Ile)-lysidine synthase [Porphyromonas uenonis 60-3]
          Length = 494

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 110/303 (36%), Gaps = 23/303 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           +++A+SGG+DS  LL  L  +         +  A   +  LR+  +  +  +V+++C++L
Sbjct: 34  VIIALSGGADSTALLWGLSLL-------GYRCVAAHCNFHLRDDESDRDEAFVTELCAQL 86

Query: 81  RIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +     S+       +     +  AARE RY    E  +  +A  I   H  +D +E +
Sbjct: 87  GVPLERASFDTYGYVATHQGVSVEMAARELRYHFFDELYERYDAQCIALGHHLEDNVEQL 146

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +        +G G+ G+   +         RP +      I  FL      +  D +N 
Sbjct: 147 MINLS-----QGAGVRGLRGMLPMREEGKYIRPLIDTPPRLIYDFLQTAEQPFVTDSTNA 201

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D    R  VR  +R +    L     +     + +   +  L   Y+   + +  +   +
Sbjct: 202 DTTIRRNFVRHTLRPL-FDQLNPSFDQAVASTIHILRDLEQLQDYYIRSTLPADASQPLE 260

Query: 256 I--LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           I  L      L  L    A+I   ++ L   + +       ++           +I+R  
Sbjct: 261 IAWLRQQIAPLALLYSHFASIDCDRLVL--QQLLMDCAKPERADSYARYEGRDGIIERYR 318

Query: 314 NFL 316
             L
Sbjct: 319 GHL 321


>gi|302338330|ref|YP_003803536.1| tRNA(Ile)-lysidine synthetase [Spirochaeta smaragdinae DSM 11293]
 gi|301635515|gb|ADK80942.1| tRNA(Ile)-lysidine synthetase [Spirochaeta smaragdinae DSM 11293]
          Length = 449

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 161/426 (37%), Gaps = 45/426 (10%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVS 74
           +    +LVA SGG DS    +   SV            A+ +DHCLR  +  ++E   + 
Sbjct: 19  LPGGRLLVAYSGGPDSTA--LLAASVALLSVSADFTLEAVYIDHCLRSQDERREERTIIQ 76

Query: 75  DVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
               R  +   ++S        + S   +G+ AAAR+ RY+              + AHT
Sbjct: 77  AATRRWNVPLHLLSVGEGEIVSQASASGSGVEAAARQYRYSCFENLISREKFDYCLLAHT 136

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ+ET+  R     A             + +      RPFL  ++ D+  +L +RN S
Sbjct: 137 LDDQVETILQRLFEGAALD-------SSLGIPERRGPFFRPFLSVKKSDLLDYLRERNFS 189

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPK--YL 242
           +  D +N ++ + R R+R  +  +      A    ++ F   +   ++A+  L+P+  + 
Sbjct: 190 FSTDSTNGENFYLRNRIRNEIIPVVASVFPAYRTAIESFLAKQRMADSALRALLPEIPFR 249

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLL-RVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
                S+   ++   +         L R+ A I   Q  LP Y  +ER++      +   
Sbjct: 250 KESPSSVSWDAEPFFSAPEEARRRFLYRIHAEIDSSQRRLP-YPFVERIIRMDDRPE-AL 307

Query: 302 VSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRK 361
           +      I RR + ++          +++   +      RY  +    SL+ +      +
Sbjct: 308 IEAFDSRISRRGDRIF-------WDGVVVLRGK-----NRYIRRIQDGSLVNLPNIGKVR 355

Query: 362 ADVPSGIPPIIAQ-----RALSSMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSISFGKVF 416
                  PP+I +       +S+   ++  K L   ++  + +    +      S G   
Sbjct: 356 LSFSGLTPPVIIRSRMKGDVISTTGGQKRLKKLFQEWA--LPEGLRNMIPVLEDSRGIAA 413

Query: 417 IPRLPF 422
           +   PF
Sbjct: 414 VLGSPF 419


>gi|157414257|ref|YP_001485123.1| ATPase [Prochlorococcus marinus str. MIT 9215]
 gi|157388832|gb|ABV51537.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9215]
          Length = 338

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/253 (24%), Positives = 107/253 (42%), Gaps = 18/253 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +   ++IL++VSGG DSM LL  ++ +   +       S    DH   + +      +  
Sbjct: 29  IPKGSNILISVSGGQDSMALLNLINDL---KKIHNWTISVWHGDHQWHKKSSLYALELKS 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAHTF 128
            C    I+ S    + +K        ARE RY  + E AKT+       +   ++T HT 
Sbjct: 86  YCEDKNISFSFD--QANKENISSEEKAREWRYKKLCERAKTLLNKNQQKHNIYLLTGHTS 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D  ET  +   R       GLS +    L +  +++ RP L   RED + F     I  
Sbjct: 144 SDNAETFILNLSRGS--NFAGLSNIQSKRLLENQIFLIRPILIFSREDTKKFCNHMKIPV 201

Query: 189 CEDPSNTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            EDP+N+D + +R  VR+ +    ++       ++  F       NN    L  +   ++
Sbjct: 202 WEDPTNSDLKLKRNLVRKKIIPTLEVIYPGCSERIHNFSQKMSNYNNERNDL-SELAYLY 260

Query: 246 MRSIIAISQDILN 258
            + +  I++++LN
Sbjct: 261 CKDVKGINRNLLN 273


>gi|95930473|ref|ZP_01313209.1| tRNA(Ile)-lysidine synthetase-like [Desulfuromonas acetoxidans DSM
           684]
 gi|95133513|gb|EAT15176.1| tRNA(Ile)-lysidine synthetase-like [Desulfuromonas acetoxidans DSM
           684]
          Length = 415

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 108/310 (34%), Gaps = 22/310 (7%)

Query: 47  SFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAA 102
                      +DH LR+ + D+  +V ++ +RL +       +      + + GL  A 
Sbjct: 3   GQHHFDVVVAHLDHGLRDESADDALFVQELAARLDLRFFKRRVEVGGLAQRNRWGLEEAG 62

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           REAR A +SE A  +   +I  AH  DDQ ETV M   R     G+      +       
Sbjct: 63  REARRAFLSEVADQVGGAVIALAHHRDDQSETVLMHLARGCGVGGLAGMRWQE------- 115

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
               RP L   R +I +FL +  + W ED SN ++RF+R  +R  V           ++ 
Sbjct: 116 GKYIRPMLSICRNEINAFLQRHRLEWREDDSNRNERFKRNLIRHQVLPALTRYNQQTVRH 175

Query: 223 FQDLRVKV-------NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC 275
             +L  KV          +   +  +              + +    L   LLR   A  
Sbjct: 176 IAELAEKVAVEEAYWQQQLDDWLGHHACEQQGQWQVACLALCDCHPALRHRLLRELLARV 235

Query: 276 GGQISLPGYRSMERVMLFL-KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
            G     G   +  +   L     +  + +      RR + L   R     P      + 
Sbjct: 236 RGTTRGLGGGHVFELDRQLFSPAPQWQMDLPCCWAARRYDHLVFRREA---PVPAATVDM 292

Query: 335 TTVWDGRYQF 344
                GRY+ 
Sbjct: 293 VINGPGRYRV 302


>gi|254385667|ref|ZP_05000990.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Streptomyces sp. Mg1]
 gi|194344535|gb|EDX25501.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Streptomyces sp. Mg1]
          Length = 343

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 95/232 (40%), Gaps = 9/232 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           I+   ++VDH L+  +      V    + LR
Sbjct: 38  VLVACSGGADSMALASALAFEAPKLG---IRAGGVTVDHGLQPGSDLRAAEVVTRMTALR 94

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +            + G  AAAR+ARY  + E A  + A  ++  HT DDQ ETV +   R
Sbjct: 95  LDPVESVAVRVGREGGPEAAARDARYGALDEAADRLGAAAVLLGHTRDDQAETVLLGLAR 154

Query: 142 DYAEKGMGLSGMCDTILYDLNL----WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               +   LSGM +               RPFL+  R+  R   + +++   +DP N D 
Sbjct: 155 GSGIR--SLSGMPEVSAGPGGPGRTNRYRRPFLQVDRQTARKACMVQSLPVWDDPHNLDP 212

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            + R R+R         AL   + +      +++   A  +  +       +
Sbjct: 213 AYTRSRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDSWAADAEAGV 264


>gi|39938615|ref|NP_950381.1| hypothetical protein PAM_129 [Onion yellows phytoplasma OY-M]
 gi|61216552|sp|Q6YR87|TILS_ONYPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|39721724|dbj|BAD04214.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 436

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 14/233 (6%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           SL      ++AVSGG DSM LL  L +        KIK   +  +H  R     +   V 
Sbjct: 9   SLDANQTYIIAVSGGVDSMALLHCLVA-------QKIKLQVVHFNHLARPNVWKDKELVQ 61

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C +  +      ++ + PQ    A AR  R   + + A       I+TAH  DD  ET
Sbjct: 62  SYCLQNSLCFH--YFELNCPQKNFQAQARLLRQQKLMQIATKHQTPFILTAHHLDDLAET 119

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           +  +  R      +G SGM     +  +    +PFL   +  I S+     I + ED +N
Sbjct: 120 ILQKITRSSTL--LGYSGMQIQTSW-QDFIFLKPFLYVPKAKIISYAAFYQIPFLEDYTN 176

Query: 195 TDDRFERVRVRRFVRD--IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            +  ++R ++R  V        +    + K+Q   ++  N +      +LT H
Sbjct: 177 QNFTYQRNQIRHQVIPYLKTQTSFLQNIPKYQQTLLQAYNFIRKQTLLFLTKH 229


>gi|113867244|ref|YP_725733.1| ATPase [Ralstonia eutropha H16]
 gi|113526020|emb|CAJ92365.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ralstonia eutropha H16]
          Length = 439

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 11/305 (3%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+SGG DS+ LL A  +  ++   G  +  A+ V H L+  A D  R+ + +C++ ++ +
Sbjct: 2   ALSGGRDSVALLHAARAAAAEWGVGA-RVVALHVHHGLQADADDWDRFCAALCAQWQVGY 60

Query: 85  SVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
            V       +   G+ AAAR ARYA ++       A L++ AH  DDQ+ETV +R  R  
Sbjct: 61  FVRRVSVQPEVGEGVEAAARRARYAALAAMCADSGARLLLFAHHQDDQVETVLLRLFRGA 120

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              GM        +     + + RP+L   R +I ++     + W +DPSN D+R+ R  
Sbjct: 121 GVAGMAGMPGLRPLDERSGVTLLRPWLDVARAEIEAYCAANALQWVDDPSNADERYARNA 180

Query: 204 VRRFVRDI-----DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ---- 254
           +R  +  +      L A  ++          + + +A      L    R    +++    
Sbjct: 181 LRAHLPALVAAFPALSANVVQAAAHFAQAGALIDELAAASLAALARPGRDADTLAELDLA 240

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
            +  +       +LR      G +       +  R  L   +G    ++   +V+ R  +
Sbjct: 241 GLRALPVAHADAVLRFWLRDLGVRAPSTARLAAMREQLVAHAGGEPAIAHEGLVLRRFRD 300

Query: 315 FLWIT 319
            +   
Sbjct: 301 RVLAC 305


>gi|86609808|ref|YP_478570.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123501245|sp|Q2JJ74|TILS_SYNJB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|86558350|gb|ABD03307.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 327

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/318 (20%), Positives = 112/318 (35%), Gaps = 27/318 (8%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + L++P   +LVA SGG DS  LL  L  +     +   +   +  DH       +  R+
Sbjct: 18  QQLLHPGQRLLVAFSGGQDSFCLLQILRDLQPRWGW---QIFVLHCDHRWSADETECARF 74

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +     +  + H+V +    +      A AR  RY  + + A+T + + ++  HT  D+ 
Sbjct: 75  LQGWLQQQGLPHAVETADPIRRD---EAGARAWRYQQLEKWARTWDCSAVVMGHTASDRA 131

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ET      R     G+        +      +  + RP L   R +   F  Q  +    
Sbjct: 132 ETFLWNLLRGTGAAGLSSLDWQRHLDDRDPTSAQVVRPLLGLYRWETEQFCQQHQLPVWP 191

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN D    R R+R  V        YLK      L   +N A  +L  ++  V  ++  
Sbjct: 192 DRSNQDLAHGRNRLRLEVMP------YLKQHFNPQLEAALNRAATLLQAEHELVVAQAAQ 245

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQ----------ISLPGYRSMERVMLFLKSGKRG 300
              Q        L    LR +      Q             P +  +E  +  LK+ +  
Sbjct: 246 LWPQVYEPALPGLRRDPLRAAPLALQRQVMFQFLSLVLPHHPTFEQVEAGIQLLKADRGS 305

Query: 301 CVS--IGRVVIDRRANFL 316
                 G   ++ + + L
Sbjct: 306 RSPDYPGGHWLEVKGDHL 323


>gi|144575199|gb|AAZ44022.2| conserved hypothetical protein [Mycoplasma synoviae 53]
          Length = 291

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             L+AVSGG+DSM LL           +         V++  R  +  +   V + C + 
Sbjct: 4   KYLIAVSGGADSMFLLD---------KYKHKNIIVAHVNYNQRNDSNFDEELVRNYCEKN 54

Query: 81  RIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            I   ++S  K    +      AR+ARY+   +  K  N   ++ AH   D LET YM+ 
Sbjct: 55  NIKLEILSLNKQDFLKGNFQDWARKARYSFFEKVYKKHNCNKLLIAHHKLDFLETYYMQK 114

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDR 198
           + +      G+        +  ++ + RPFL +  ++ I  F  +  I + +D SN + +
Sbjct: 115 ESNKMNFFYGI----KKRSFIFDMHVYRPFLYKYTKKQICKFCRKNKIPYRDDYSNFESK 170

Query: 199 FERVRVRRFVRD 210
           + R  VR+ +  
Sbjct: 171 YTRNIVRKSLLQ 182


>gi|241896603|ref|ZP_04783899.1| possible tRNA(Ile)-lysidine synthetase MesJ [Weissella
           paramesenteroides ATCC 33313]
 gi|241870084|gb|EER73835.1| possible tRNA(Ile)-lysidine synthetase MesJ [Weissella
           paramesenteroides ATCC 33313]
          Length = 324

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 11/251 (4%)

Query: 9   VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +R      ++ A  H+LVAVSGG DS+ LL  L +        + + SAI ++H LR  A
Sbjct: 11  IRHLREQQLFDANDHVLVAVSGGQDSLRLLRWL-TAGDLPKDLQPQVSAIYINHQLRSDA 69

Query: 67  KDEVRYVSD-VCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIM 123
           + E   V         +  + +   +    P   +   ARE RY ++   A+ + A  I+
Sbjct: 70  QQEEALVRKVFAHTPHLQSATIRKLDWSEVPTVSVEEKAREKRYGVMFSVAEQVGANSIV 129

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  +DQ+ET+  +  R    +   L+GM +       L + RPFL   + +++  + +
Sbjct: 130 TAHHRNDQVETILYKLTRGSRLE--QLTGMPEKQTLTNGLKLVRPFLSLSKLELKDLIKE 187

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK---FQDLRVKVNNAVAMLIPK 240
               W +D +N D ++ R R+R  V     H     +     F D    +       I +
Sbjct: 188 PVQEWIDDYTNDDQQYARNRLRNAVIPDLQHINKQAVAHIIDFADQLTALQALADPQIKQ 247

Query: 241 YLTVHMRSIIA 251
           Y+      ++ 
Sbjct: 248 YVAALEAGVLD 258


>gi|78780128|ref|YP_398240.1| hypothetical protein PMT9312_1743 [Prochlorococcus marinus str. MIT
           9312]
 gi|78713627|gb|ABB50804.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 336

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 23/307 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +   ++I+++VSGG DSM LL  ++ +   +       S    DH   E +      +
Sbjct: 27  KLIPKGSNIVISVSGGQDSMALLTLINDL---KKLHNWSISVWHGDHQWHEKSSLYALEL 83

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-------NATLIMTAH 126
              C    I+      +  K        ARE RY  + E AKT+           ++T H
Sbjct: 84  KSFCEGKNISFYFD--QAKKENVFTEEKAREWRYKKLCERAKTLLKKDQGGGDIYLLTGH 141

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T  D  ET  +   R       GLS +    L +  +++ RP L   RED + F     I
Sbjct: 142 TSSDNAETFILNLSRGS--NFTGLSNIESKRLIENKIFLIRPILIFSREDTKQFCNDMKI 199

Query: 187 SWCEDPSNTDDRFERVRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
              EDP+N+D + +R  VR+ +    ++       ++  F       NN    L  +   
Sbjct: 200 PVWEDPTNSDLKLKRNLVRKKIIPTLEVIYPGCSERINNFSQKMSNYNNERNDL-SELAY 258

Query: 244 VHMRSIIAISQDILN--IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           ++ + +  I++++LN          L R    I   Q      +++ ++   +    +G 
Sbjct: 259 LYCKDLRGINRNLLNSMCIEARCTILNRFLKEISAKQC---SSKNLTKLATSIYEKNKGQ 315

Query: 302 VSIGRVV 308
           +++   +
Sbjct: 316 INLQEFL 322


>gi|325971761|ref|YP_004247952.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy]
 gi|324026999|gb|ADY13758.1| tRNA(Ile)-lysidine synthase [Spirochaeta sp. Buddy]
          Length = 484

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 27/296 (9%)

Query: 4   SPIESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           + + +VR F+  + +     I VA SGGSDS+ LLIAL  +  + SF      A+ V H 
Sbjct: 7   TVLNNVRSFLAMQHIDATKRIGVAFSGGSDSLALLIALRKM-YEPSF----LHAMYVQHH 61

Query: 62  LRETAKDEVRYV--SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
           LR + + E       + C +L ++  +       V+      + G+  AAR  RY  + E
Sbjct: 62  LRPSNELEAETALNRENCQKLGVSLHILDLGKGSVAHAMQTRRGGVEEAARYLRYEALYE 121

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLR 171
                  T + TAH  DDQLET  MR  +  +     L G+    + D   L + RP L 
Sbjct: 122 ECNRGGCTYLATAHNADDQLETTLMRLFQASSI--AALEGIRPVRIVDGYALTLIRPVLE 179

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL-------HALYLKMKKFQ 224
           C    +  ++   N+ W ED +NT+D + R  +R  +    L        ++ +  ++F 
Sbjct: 180 CSHAVLAEYVGLHNLVWSEDSTNTEDAYLRNTIRHTITAPILSTFTSAYDSISVMTRRFS 239

Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
           +    +       +         ++ ++S   L +   L   +L    A    +  
Sbjct: 240 EAGQLLQTLTDQELASVSFFPEGAVFSLS-WFLALAPALRELVLFRIVAQFEQKSR 294


>gi|86607208|ref|YP_475971.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-3-3Ab]
 gi|123505003|sp|Q2JRN8|TILS_SYNJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|86555750|gb|ABD00708.1| tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-3-3Ab]
          Length = 336

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 108/296 (36%), Gaps = 15/296 (5%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L+ P   +LVA SGG DS  LL  L  +     +   +   +  DH          ++
Sbjct: 18  RQLLRPGQRLLVAFSGGQDSFSLLQILRDLQPRWRW---QIFVLHCDHRWSADETACAQF 74

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +     +  + H+V   + + P     A AR  RY  + + A+T +   + T HT  D+ 
Sbjct: 75  LQGWLQQQGLPHAV---ETADPIRWDEAGARAWRYQQLDKWARTWSCEAVATGHTASDRA 131

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ET      R     G+        +      + W+ RP L   R +   F  Q  +    
Sbjct: 132 ETFLWNLLRGTGAAGLVSLDWQRRLDERDPTSAWLVRPLLGLSRWETEEFCRQYQLPVWP 191

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-----VAMLIPKYLTVH 245
           D SN D    R R+R  V          +++   +    +  A     VA     +L V+
Sbjct: 192 DRSNQDLAHGRNRLRLEVMPYLKQHFNPQLEAALNRAATLLQAEHELVVAQAAQLWLQVY 251

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             ++  + +D L      L   +     +       P +  +E  +  LK+G+R  
Sbjct: 252 EPALPGLRRDPLRAAPLALQRQVMFQF-LSLLLPHHPTFEQVEAGIRLLKAGRRSR 306


>gi|325283258|ref|YP_004255799.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP]
 gi|324315067|gb|ADY26182.1| tRNA(Ile)-lysidine synthase [Deinococcus proteolyticus MRP]
          Length = 529

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 138/379 (36%), Gaps = 50/379 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++V VSGG+DS+       ++L        +      DH LR  + ++  +V  +  R
Sbjct: 15  RQVVVGVSGGADSV-------ALLRALLAAGAEPLVAHFDHRLRPDSAEDAAWVEALAGR 67

Query: 80  LRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L + +      V          L  AAR  RY+ ++  AK      ++TAHT  DQ ETV
Sbjct: 68  LGVPYVGGGADVGRVAQVRGWNLEDAARRLRYSFLTRTAKDAGIDTVLTAHTRRDQAETV 127

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            MR  R  A     LSG+           + RP L   RE++ ++L      W ED +N 
Sbjct: 128 LMRLLRGEAV----LSGIAPRW-----GGVERPLLGVAREELEAYLRALGQDWREDSTNA 178

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D    R  +R  V  +         +    L  +     A+L        + + I     
Sbjct: 179 DTALTRAWLRLEVLPLLRSRFPAAEEALSGLAGRAAEDEAVLSG------LAAAIGPHTP 232

Query: 256 ILNIDSTLLFYLLRVSAAICG-----GQIS--LPGYRSMERVMLFLKSGKRGCVSIGRVV 308
           ++     +L   LR      G     GQ+S       + E   L L  G+   V+ GR+V
Sbjct: 233 LVGQPPAVLRRWLRAELDRAGLAVRAGQLSALAGALAAGETRHLTLPHGQPASVTGGRLV 292

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNL-SDSLIQIGPQSYRKAD-VPS 366
           +         TR     P     P+        +Q +       I++   + R +D +  
Sbjct: 293 LPG-------TRPDWAAPDFAFPPD--------WQLRTPQPGDRIRLSGGTRRLSDVLAE 337

Query: 367 GIPPIIAQRALSSMPSKEG 385
              P   +  +  + S +G
Sbjct: 338 ARVPRAWRPQVPLLASAQG 356


>gi|326803019|ref|YP_004320837.1| tRNA(Ile)-lysidine synthetase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650784|gb|AEA00967.1| tRNA(Ile)-lysidine synthetase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 472

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 102/295 (34%), Gaps = 18/295 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L       +AVSGG DSM LL    ++ +      + F  I ++H LR  ++ E   +  
Sbjct: 23  LASHKPYALAVSGGVDSMVLLRCFETLQA---IHGLNFFVIHINHRLRLESEAEQEMMVA 79

Query: 76  VCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            C    +   V  W++       + A AR  RY    +  K   +  ++TAH  DDQ+ET
Sbjct: 80  YCQERDLDLKVSIWQHGADLAGNVEAKARAFRYHAFGKILKDKASLRLVTAHHSDDQVET 139

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             MR                  +       I RP L   +  +        I + ED +N
Sbjct: 140 GLMRLVHGGHLASFKGMESLSPLYTYPKAQILRPLLEVEKASLYDIARVEGIPYQEDMTN 199

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY------LTVHMRS 248
            D  F+R R R+ +              F+  +  +   + +  P+       L      
Sbjct: 200 WDKHFQRNRFRQEIIPYLERESGNFKAHFRHFQTDLKALLDLAYPQLNQLLANLFDQEAG 259

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLP-----GYRSMERVMLFLKSGK 298
              I  + L   S     LL     +   +  +P         ME ++ FL  G 
Sbjct: 260 CFRIDLEALGQYSQAEQVLL---MEMLFQRCEIPELLVFTRTGMEELVDFLNQGA 311


>gi|307110239|gb|EFN58475.1| hypothetical protein CHLNCDRAFT_140495 [Chlorella variabilis]
          Length = 556

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 13/209 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETA 66
           L     + VA+SGG DS+ L               +  DR   +    A+ VDH LR  +
Sbjct: 16  LRSSDRVAVALSGGPDSLALASMTVWWQGFVRNQVLRRDRLRSQQTPLALIVDHKLRPES 75

Query: 67  KDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTGLMA-AAREARYALISEHAKTINATLIM 123
            +E   V+     L +   V++  W   +   G    AAREARYA +      +  T ++
Sbjct: 76  TEEAHAVAAQAEGLGMQTRVLALGWPPGEVAQGDRMVAAREARYAALLRACGEMGRTHLL 135

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            AH  DDQ ET  +R        G+  +  + +       + + RP L   + ++ ++  
Sbjct: 136 LAHHADDQAETFLLRLLHASGVVGLACMPAVAEKRTEFGRIKVVRPLLGFHKAELEAYCQ 195

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI 211
           +  + +  DP+N++  + R R+R  +R +
Sbjct: 196 RSRLPYIVDPTNSELSYHRNRIRHVLRQM 224


>gi|322506829|gb|ADX02283.1| ATPase [Acinetobacter baumannii 1656-2]
 gi|323516698|gb|ADX91079.1| tRNA(Ile)-lysidine synthetase [Acinetobacter baumannii TCDC-AB0715]
          Length = 418

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 114/271 (42%), Gaps = 13/271 (4%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           K  AI +DH L++ + +    V+   + L I + +   + +     L A AR+ARY    
Sbjct: 8   KIRAIYIDHQLQDQSAEWAEVVATQATILNIPYIIQKVQIAN--GNLEAQARQARYQAYQ 65

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +H +     +++ AH   DQ ETV +R        G+      D   Y  ++ I RPFL 
Sbjct: 66  QHLQEN--EILLLAHHQQDQAETVILRLLSGAGVDGLAAMQAID---YRKDMTIWRPFLD 120

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             RE I  +  Q  + + +DP N D  ++RV  R  +    L + + KM++       + 
Sbjct: 121 LTREQIALWTAQLEVKYIDDPMNYDTHYDRVWCREALWP-FLTSRFPKMQQALSRTSYLM 179

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR--VSAAICGGQISLPGYRSMER 289
              + ++ + L    +   +     L   S L F   R  +SA + G     P +  +ER
Sbjct: 180 QDASEVLEEVLKDDWQYSGSADYLDLTKLSELSFARQRQLLSAWMKGQGQYRPAFEMVER 239

Query: 290 V---MLFLKSGKRGCVSIGRVVIDRRANFLW 317
           +   ++  KS  +  +   +    R  N L+
Sbjct: 240 LRTEVIESKSDAQAALHWNQFYYVRYQNILY 270


>gi|154175317|ref|YP_001408589.1| PP-loop family protein [Campylobacter curvus 525.92]
 gi|112803929|gb|EAU01273.1| PP-loop family [Campylobacter curvus 525.92]
          Length = 330

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 109/297 (36%), Gaps = 28/297 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S G DS  L   L+          + F    VD+  R  +KDEV     + ++   
Sbjct: 19  LLAFSHGVDSTALFYILND-------AGVGFDIAIVDYNERAQSKDEVASARALAAKFDK 71

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                S   S+  +     AR+ARY   +E         ++ AH  DD+ E   M+  + 
Sbjct: 72  KCFTKSVNLSR--SNFECTARKARYEFFAEICAKNGYKNLILAHQLDDRFEWFLMQLAKG 129

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                  L GM D      +  I RP L+ ++  + +FL +R + +  D +N   +F R 
Sbjct: 130 AGLNE--LLGMSD-FERRKDYDILRPLLKFKKSQLEAFLKERGLKYFIDETNFSHKFRRN 186

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
            +R+   +                   V  +  +L     T+      A  +  L     
Sbjct: 187 FMRQNFSE----------PFLARFSNGVIKSFELLQSDAQTLRPSFTSAADKIYLVKKDE 236

Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319
                +     I G  +S    +  ER +      ++GCV  G+V +    NF+ +T
Sbjct: 237 SAMRGVDKVCKILGVLMSEAQRKECERCL------EKGCVISGKVAVGANENFILVT 287


>gi|224532113|ref|ZP_03672745.1| tRNA(Ile)-lysidine synthetase [Borrelia valaisiana VS116]
 gi|224511578|gb|EEF81984.1| tRNA(Ile)-lysidine synthetase [Borrelia valaisiana VS116]
          Length = 440

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/293 (21%), Positives = 110/293 (37%), Gaps = 25/293 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD- 68
           +F+ ++ +    ++VA SGG+DS         +L+ + +      A    H +R   +  
Sbjct: 14  KFYKKNFLSKDRVIVAFSGGADSTT------LLLNLKYYLNNNIIAFYFAHFIRSDNEQN 67

Query: 69  -EVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATL 121
            E+ +V   C    I   +            +    +   AR+ RY  +    K  +A  
Sbjct: 68  KEIEHVKGFCDLYNIDLKIKKCDVDIKSESVRLGVSIEELARKFRYNALENALKENDANY 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  +DQ+ET+ MR  +     G+         + D+N  I RP L   R +I +FL
Sbjct: 128 IALAHNENDQIETIIMRFFQGSFLDGLA-------GIPDVNRNIIRPLLEVSRLEIENFL 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              NIS+  D +N  + + R RVR  +            K  + +             K 
Sbjct: 181 SLNNISFFVDSTNAQNLYLRNRVRNNLLPYIEKIFKGYEKCLKRISEFSKEFTDYFEKKE 240

Query: 242 LTVHMRSIIAISQDI---LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
                +     S D+   L+    L+F L+        G ++   Y+S+  + 
Sbjct: 241 FFPVEKGKYYYSFDLKTFLDFPKYLVFRLI-FKILNSEGIVAKVSYKSLNEIF 292


>gi|148238412|ref|YP_001223799.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 7803]
 gi|147846951|emb|CAK22502.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 7803]
          Length = 350

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 19/297 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +L+A+SGG DSM LL  L  +                DH     +      ++ 
Sbjct: 37  LPQGTTLLLALSGGQDSMALLGLLRDLQK---HHHWTLQLWHGDHGWHPGSAAVADALAQ 93

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI------NATLIMTAHTFD 129
            C +  +   V     +   TG  AAAR  RY+ +S+ A+ +       A  ++TAHT  
Sbjct: 94  WCDQQALPLRVSRSTAAI--TGSEAAARAWRYSELSQTAQQLNEAGAAGACTVLTAHTAS 151

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNIS 187
           D+ ET+ M+  R     G+G       +  +      + RP L   R++  +     ++ 
Sbjct: 152 DRAETLLMQLSRGTDLAGLGSLRQSRPLQANSSHGPRLVRPLLDFTRDETAAICQDLHLP 211

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYL----KMKKFQDLRVKVNNAVAMLIPKYLT 243
              DPSN+D R ER R+R+ V  + L +L+     +M    +   +V+++   L+   L 
Sbjct: 212 VWHDPSNSDLRIERNRIRQEVLPV-LESLHAGCSRRMAWLSERISQVHDSQNALVDLSLR 270

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
               +   + +  L   +     LL        G   L   R +E +   +   +  
Sbjct: 271 GLQSAGNGLQRPPLQALAADPRRLLLQRWLQQQGVQPLNA-RQLEELSRAIGPQQPP 326


>gi|311112392|ref|YP_003983614.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931]
 gi|310943886|gb|ADP40180.1| tRNA(Ile)-lysidine synthase [Rothia dentocariosa ATCC 17931]
          Length = 398

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 7/225 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ L               ++  A+ VDH L+  + +     ++  + L 
Sbjct: 57  VLVACSGGPDSLALACIAAHFARR---SDVRVGAVVVDHGLQADSAEVAASTAETLTNLG 113

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +        +  +   G   AAR ARY+          A  ++  HT DDQ ETV +   
Sbjct: 114 LYPVRTECVQVPQGSMGPEMAARTARYSAFECAVHNTGARAVLLGHTLDDQAETVLLGLG 173

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +   L+GM    + +  +   RPFL  RR D+ +       +   DP+NTD    
Sbjct: 174 RGSGTR--SLAGMPPARI-ENGVTYLRPFLALRRADMLNICEAEGATPWNDPTNTDQTLM 230

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           R R+R  +       L   +         V    A  +    T  
Sbjct: 231 RARIRHTILPFLQEHLGGDVALSLARTAAVAGPDAEYLDALATAE 275


>gi|292669438|ref|ZP_06602864.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648891|gb|EFF66863.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 465

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 105/304 (34%), Gaps = 20/304 (6%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEV 70
              L YP   +LVA SGG+DS+     L ++    + G  +      +H +R   +  + 
Sbjct: 15  AHDLFYPVRKLLVACSGGTDSL---ALLDALDILHTAGGAQLICAHYEHGIRGADSLADA 71

Query: 71  RYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           R+V   C+   I        V       +  L  AAR  RY  +           I+ AH
Sbjct: 72  RFVEAFCAMRGIPFVLEAGDVPAYARMHKCSLETAARICRYDFLYRVCDERKCDAIVLAH 131

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV MR  R     G+           + +    RP L   R ++ ++ ++R +
Sbjct: 132 HADDLAETVLMRILRGTGPAGLAAM-------RERDGLYLRPLLTVMRAEVEAYAVKRGL 184

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
               D +N      R R+R  +          A+   + +   L  + ++ +A L     
Sbjct: 185 MPRHDATNDAMDARRNRIRHELLPELARTYNPAVRDALTRLSALAAEEDDLLAELAEDAY 244

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
           T  +         +  +   L   +LR+      G      Y   ER+   L       +
Sbjct: 245 THALCVGGLSIPALRALHPALQRRVLRIFWMWETGAAQDFSYLHEERMRALLAVEGTARI 304

Query: 303 SIGR 306
            +  
Sbjct: 305 EMQG 308


>gi|308235339|ref|ZP_07666076.1| tRNA(Ile)-lysidine synthase [Gardnerella vaginalis ATCC 14018]
 gi|311114324|ref|YP_003985545.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Gardnerella vaginalis ATCC 14019]
 gi|310945818|gb|ADP38522.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Gardnerella vaginalis ATCC 14019]
          Length = 363

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 117/286 (40%), Gaps = 25/286 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ L      V + R    I+ +AI V+H ++E +    +  ++  + L 
Sbjct: 45  VLVACSGGRDSLALTALAVKVCASRG---IRCAAIIVNHNMQEGSAKVAQNAANTVASLG 101

Query: 82  IA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           +      V S +    + G  +AAR+ARYA I   AK + A+ ++ AHT DDQ ETV + 
Sbjct: 102 VDKSLIFVESVQVKDGEKGEESAARDARYAAIINAAKDLGASAVLLAHTADDQAETVIIG 161

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD- 197
            +     + +        I     +  +RP +  RR +  +      I W +DP+N D  
Sbjct: 162 LRDSAGLEAVAGM---KNITVRSGIRFARPLINLRRLETTNICKDLGIEWWDDPTNGDLT 218

Query: 198 --------RF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
                    +  R R+R  +        Y+      D+ + +             ++ + 
Sbjct: 219 PSDVELPKSYPLRSRIRHTLMP------YISRFFATDMTLLLAKGAKFAQDDLDYINSQV 272

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
            I   + IL  +     + ++++ +    Q +    R + R +   
Sbjct: 273 DIIERETILKQNYDSCAHEVKIAISPLTKQHTSIRRRIIARALTAA 318


>gi|78777932|ref|YP_394247.1| tRNA(Ile)-lysidine synthetase-like [Sulfurimonas denitrificans DSM
           1251]
 gi|78498472|gb|ABB45012.1| tRNA(Ile)-lysidine synthetase-like protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 329

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 124/310 (40%), Gaps = 38/310 (12%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S +     L+A SGG+DS  L   L           I F    V++ +RE ++DEV Y  
Sbjct: 8   SKLRDKKNLLAFSGGADSSALFFLLTQ-------ESIPFDIAIVNYGIREQSRDEVAYAK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++ +   I   +  +   K +    A ARE RY   S+ +   +   ++TAH   D+ E 
Sbjct: 61  ELSAANNITCHI--YNAPKIEQNFEAKAREIRYEFFSKLSLENSYENLLTAHHLGDRFEW 118

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             M+  +        ++GM  ++    +  I RP L   + ++  +L +    + ED SN
Sbjct: 119 FLMQFCKGAGC--AEIAGM-QSVQKRGSYTIIRPLLHLEKRELIEYLHRIKARYFEDESN 175

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
            D+  +R   R        H   L  +  + +R       A L      +  ++ I +  
Sbjct: 176 LDESIKRNYFRHN------HTTPLLERHLEGIRKSF----AYLDEDREALIEKADIKVID 225

Query: 255 DI-----LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR-VV 308
                  LN   + +F + +        Q+ +      ER +L     ++  + +GR  V
Sbjct: 226 KFAYFKRLNTQRSNIFAIDKYL----KSQLYMLSAN--ERDLLR----EQKSLVVGRKFV 275

Query: 309 IDRRANFLWI 318
           I++   F++I
Sbjct: 276 INQSRKFVFI 285


>gi|72383087|ref|YP_292442.1| aromatic amino acid beta-eliminating lyase/threonine aldolase
           [Prochlorococcus marinus str. NATL2A]
 gi|123773751|sp|Q46ID9|TILS_PROMT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|72002937|gb|AAZ58739.1| Aromatic amino acid beta-eliminating lyase/threonine aldolase
           [Prochlorococcus marinus str. NATL2A]
          Length = 326

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 27/320 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + IL+A+SGG DSM LL  +  +   +   + +      +H     +++    +  
Sbjct: 14  LPSNSTILLAISGGQDSMALLKLIIDL---KRLHQWQVEVWHGNHQWHAKSEETEDELKL 70

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128
            C + +I+    S K  K +      AR+ RY  +   AK           T I+T HT 
Sbjct: 71  WCLKNQISFH--SNKADKKEVANEEKARDWRYKNLIMKAKFLSSKNIHFPCTRILTGHTA 128

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D+ ETV M   R       GL+ + +    + N+ ++RP L   R +        N+  
Sbjct: 129 TDRAETVIMNLARGT--DLTGLTTLKEQRTIENNIDLTRPLLIFNRNETLEICKDFNLPI 186

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             DPSN +    R ++R+ +    L  L    K        V N +             +
Sbjct: 187 WIDPSNENINLTRNKIRKEI----LPILNSIYKGADSRIASVANRLESYNEDQKLFAKIA 242

Query: 249 IIAISQDILNIDSTLLFYLLR---VSAAICGGQISLPGYR----SMERVMLFLKSGKRG- 300
           I     + +N  S +  + L        +     ++   R     +E +   +   K   
Sbjct: 243 IQFCQGEKINSLSRIKLFGLTNSIRQIILSNWLKTMGVKRVTALQIEEINTKVSQRKPPG 302

Query: 301 CVSIGR-VVIDRRANFLWIT 319
            + +    +I      ++I+
Sbjct: 303 SIHLHGDFLIRWNKEAIYIS 322


>gi|227538442|ref|ZP_03968491.1| tRNA(Ile)-lysidine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241724|gb|EEI91739.1| tRNA(Ile)-lysidine synthetase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 443

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 83/436 (19%), Positives = 144/436 (33%), Gaps = 45/436 (10%)

Query: 3   LSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ +E    +V   R       I++AVSGG DSM +                       +
Sbjct: 1   MNVLERFHRYVSQNRLFGPDDKIVLAVSGGKDSMLMARLFLD-------SNYPVIIAHCN 53

Query: 60  HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHA 114
             LR E +  + + V        I   V  +       + +  +  AARE RY    E  
Sbjct: 54  FSLRGEESDLDQQLVEAFGEEYGIPVFVKRFDTEAYAEENRISIQMAARELRYQWFEELR 113

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  I  A   +D +ETV +   R     G GL+G+           I RP L  R 
Sbjct: 114 IAQGCAYISVAQHRNDHIETVLLNMIR-----GTGLAGLQGIQPKRE--RIIRPLLFLRA 166

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            ++   +    + + +D SN   ++ R ++R  +  +        ++ F     K   A 
Sbjct: 167 AEVAEAVRVLQVPYRDDQSNFSIKYARNKIRLNIVPLMEEINPEFVQSFASSIDKFAGAY 226

Query: 235 AMLIPKYLTVHMRSIIAISQ---DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
             L+  ++    +S+   S+   ++L    +L  +L   +      Q        +E ++
Sbjct: 227 -QLLQDFVHPVRQSLFKESKASTEVLIEKKSLEPHLTNAALLYELFQPYHFQKNVLEDLV 285

Query: 292 LFLKSGKRGCVS--IGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG-RYQFQNLS 348
              ++G          R+++DR    L  T         I   +E   W G  +  +  S
Sbjct: 286 ATWENGTGRIFESDSHRLLVDRTHLILHPTGPEVEARVCIEESDEQAEWKGFHFNIEKSS 345

Query: 349 DSLIQ----IGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLPV 404
            + I     I    + K   P  I     Q      P    GK  ++ +           
Sbjct: 346 SADIVKEKHIAKIDWDKLQFPLQIRS--WQEGDIFYPLGMEGKKKVSDY----------F 393

Query: 405 AYAFSISFGKVFIPRL 420
                 SF K  IP L
Sbjct: 394 IQQKINSFAKARIPIL 409


>gi|91784172|ref|YP_559378.1| PP family ATPase [Burkholderia xenovorans LB400]
 gi|91688126|gb|ABE31326.1| ATPase, PP-loop superfamily [Burkholderia xenovorans LB400]
          Length = 476

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 135/402 (33%), Gaps = 30/402 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E+V F +  L   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LEAVGFSLSRLPANARIAIAFSGGVDSSVLLDAAVRVA-----GASRCVALHVHHGLSAH 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +         +  +      S+    G+ AAAR+ARY  + +   +     +  
Sbjct: 69  ADAWLAHCEAFARERGVEFAAERVAVSRDTGVGVEAAARDARYRALDDMCASRGVATLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+        +    +    RP L   R  +  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PKYLPAKASATRVRPLLHLLRAQLEQYASAR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            + W +D SN D R+ R  +R  V    L   +   +           +   L+ ++  +
Sbjct: 188 ALRWIDDESNADTRYARNALRHDVMP-ALAVHFPGFRDALARTAAHAASAQRLLDEFARI 246

Query: 245 HMRSIIAI------SQDILNIDSTLLFYLLRVS-----AAICGGQISLPGYRSMERVMLF 293
            M +             +L +D      L+R        A           R + R +  
Sbjct: 247 DMEAASRDEGRALSHDALLALDDERALNLMRYWMRTLGLAAASSARLGDALRQL-REIGA 305

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNL 347
              G    V      +      ++          +   L         W G   ++    
Sbjct: 306 AGEGHALRVDHAGHALRSYRGLVYWEAGDSSGPADETALAARAVSELAWQGESVWRLPQW 365

Query: 348 SDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389
             + I     +      P  IP  + +RA+SS  S+ GG+ +
Sbjct: 366 RGTFIFADASAGE----PDAIPVSVLRRAVSSARSRSGGERM 403


>gi|320105913|ref|YP_004181503.1| tRNA(Ile)-lysidine synthetase [Terriglobus saanensis SP1PR4]
 gi|319924434|gb|ADV81509.1| tRNA(Ile)-lysidine synthetase [Terriglobus saanensis SP1PR4]
          Length = 358

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 103/251 (41%), Gaps = 20/251 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           SL  P   I VA S G+DS  LL+ALH     R    I  SA+ + H  R   +  +  +
Sbjct: 15  SLFRPGDRIAVAASAGADSTSLLLALHE---QRVALGIGLSAVHLHHGTRGAESDRDRDF 71

Query: 73  VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V  +C+RL +        +          L  AAR AR  L          T++ TAHT 
Sbjct: 72  VQALCARLDVPLRLAESDIPAAAEADGETLEEAARNARLELFRTLMLGGEVTMVATAHTQ 131

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV  +  R    +G+        +     L + RP L   R  + +FL  R  +W
Sbjct: 132 DDQAETVLAKLLRGAWTEGLSGIHPILFLGEGERLPVIRPMLHLSRVQVEAFLEARGEAW 191

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           CED SNT  +  R R+R  +           M K ++   ++ +A+A           R 
Sbjct: 192 CEDSSNTSTKHMRNRIRHDL-----------MPKMREFNPQIASALATTAELAREEEARW 240

Query: 249 IIAISQDILNI 259
            I I + +  +
Sbjct: 241 AIEIERLLPQL 251


>gi|194476912|ref|YP_002049091.1| possible MesJ-like protein [Paulinella chromatophora]
 gi|171191919|gb|ACB42881.1| possible MesJ-like protein [Paulinella chromatophora]
          Length = 343

 Score =  170 bits (430), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 6/218 (2%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + +LVA+SGG DSM L+  L+ +   +   K        +H  R  +      +S 
Sbjct: 34  LPKRSTLLVAISGGQDSMALIKLLNDL---KRIYKWNLHLWHGNHRWRLESDKITCELSR 90

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             S+  +        +++P     A AR+ RY  + + A+ +N   I+TAHT  D+ ET+
Sbjct: 91  WASQELLPFYT---DSAQPPPNSEAKARQWRYESLKQLAEKLNCHKIVTAHTGSDRAETL 147

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R     G+        ++   NL + RP L   R D  +   +  +    DPSN 
Sbjct: 148 LLNIARGSNRHGIASLPHIRYLVNSNNLSLVRPLLNFSRLDTAAICQKWKLPIWYDPSNE 207

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
              F R R+R  +  +          +   L  K    
Sbjct: 208 SLYFSRNRIRHQILPVLEQLHPGASLRISSLASKFQQE 245


>gi|330838705|ref|YP_004413285.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185]
 gi|329746469|gb|AEB99825.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185]
          Length = 513

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 134/406 (33%), Gaps = 42/406 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L + + I+VAVSGG+DSM LL  L  +   R+   +       +H +R E ++++  YV+
Sbjct: 28  LAHGSSIVVAVSGGADSMALLDLLLHLQERRA---LSLHVAHFEHGIRGEASREDADYVA 84

Query: 75  DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             C    +A SV    V     + +  L  AARE RYA +      + A  I  AH  DD
Sbjct: 85  AFCRARGVACSVEAADVPQYAKERRMSLETAARELRYAFLRRVRACVGAQAIAVAHHADD 144

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV     R     G GL G+        +  + RP L C +E++ +      I    
Sbjct: 145 QAETVLQHILR-----GAGLHGLVGMTPRTGD--VVRPLLACTKEELVAHCAAHGIEVRH 197

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSI 249
           D +N      R  +R  +    L  L   +       +      A      L  +   + 
Sbjct: 198 DATNDAAEARRNYLRLEI----LPRLTAHINASAGAALVRLAEAARADDALLDEMAHAAF 253

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
             +              L     A       L   R + R+       +           
Sbjct: 254 SRVVCGEGRAAGAAHESLALSRTAF--RAEPLALQRRIVRLAARAFVDES---------- 301

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWD----GRYQFQNLSDSLIQIGPQSYRKADVP 365
                  W  R V  +  +++       WD     R+         +    ++  +    
Sbjct: 302 -----HDWGWRQVEQVRRMMVEGRGGLSWDLPGCVRFFLDGKRGVFLVGAIRTAHEEGGA 356

Query: 366 SGIPPIIAQRALS-SMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSI 410
            G P    + A   +      G PL AP +  +    + +   F  
Sbjct: 357 GGRPLSSHRTAGGMAESDLLSGIPLRAPGATRLPALGIALVADFVR 402


>gi|328354033|emb|CCA40430.1| hypothetical protein PP7435_Chr4-0255 [Pichia pastoris CBS 7435]
          Length = 517

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 33/287 (11%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           V+ F   L  P  + +++SGG DSM L   L     + + G ++  A++V+H  R+ ++ 
Sbjct: 14  VKIFPHGL--PRRVGISLSGGVDSMALTSLLSRYRDEYNVG-VEIVALTVNHEYRKGSRQ 70

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLI 122
           E   V  + + L + H ++  K +               AR  RY  I ++    +   +
Sbjct: 71  EAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQHL 130

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD----------LNLWISRPFLRC 172
              H  +DQ+ET  +R +++      G+  M D   Y             + I RP L  
Sbjct: 131 FLGHQLEDQVETFLLRLKQNSTI--FGMRCMKDISSYPSLPLYPSSVKPPIKIVRPMLNI 188

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV--------RDIDLHALYLKMKKF 223
           R++DI S+  +  + W ED +NTD     R  +R           + +    +   + + 
Sbjct: 189 RKKDIYSYCRELEVPWFEDHTNTDSSLTFRNLMRSVYQKGDIIIPKTLTQQHILQVISEI 248

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +  +  + +++  L  +   +     I        +   L   +L+ 
Sbjct: 249 ESFQQSIYSSLEELRHELNRL---GQIWYDPATFRLSLLLSGQILKR 292


>gi|326317608|ref|YP_004235280.1| tRNA(Ile)-lysidine synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374444|gb|ADX46713.1| tRNA(Ile)-lysidine synthetase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 349

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 116/341 (34%), Gaps = 57/341 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA+SGG+DS  LL A  +          +  A+ V H L+  A     +   +C RL
Sbjct: 17  PLGVALSGGADSTALLHACAARWPG------QVHALHVHHGLQVAADGFEAHCRALCERL 70

Query: 81  RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL------------------ 121
            +   V               AAR  RY  +   A+                        
Sbjct: 71  DVPLRVARVDARHAAGESPEDAARRHRYEALRTLAEGEGVVAVVERSPDSGSGSDSGQGG 130

Query: 122 --------------------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
                               I  A   DDQ+ETV +   R     G+             
Sbjct: 131 SRDGKEGGNSMTEVQPALASIALAQHADDQVETVLLALSRGAGVAGLAAM---PAFWRRG 187

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
            +   RP L     DIR++L  R   W EDP+N D+R+ R R+R  +    L A + + +
Sbjct: 188 GMDWHRPLLDVAAADIRTWLTARGEGWVEDPTNADERYTRNRIRARLLP-ALEAAFPQFR 246

Query: 222 KFQDLRVKVNNAVAMLIPKYLTVHMRS------IIAISQDILNIDSTLLFYLLRVSAAIC 275
                        A+L+ +     +++      I A+        +  L + LR + A  
Sbjct: 247 DTFARSASHAAEAAVLLRELAEADLQAIGQPPRIAALRALGRERQANALRHWLRTAHATT 306

Query: 276 GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
                L     +++V      G R  + +GR  ++R+ + L
Sbjct: 307 PTAAQL--GELLDQVAACATRGHRIRIKVGRGFVERQGDEL 345


>gi|171920688|ref|ZP_02931912.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|171903424|gb|EDT49713.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
          Length = 326

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 18/206 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L AVSGG DSM +L         R+          V++  RE+A  +   V D 
Sbjct: 12  ITNKKYLAAVSGGPDSMAMLNM-----YKRNIS----VVCHVNYHKRESADRDQEIVVDF 62

Query: 77  CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           C +  +   ++       +         A AR  RY    E  K  N   +  AH FDD 
Sbjct: 63  CKKNNLPIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDF 122

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET YM+  R       G+        +   + + RP L  R++ ++ +  +  I +  D
Sbjct: 123 LETAYMQRARQSKALFYGI----KESNFVNGMIVKRPVLFIRKQTLQRYCDENKIKYGID 178

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY 217
            +N  D +ER RVR+ + +  L+ +Y
Sbjct: 179 ETNELDIYERNRVRKTISNWSLNEVY 204


>gi|212529304|ref|XP_002144809.1| PP-loop family protein [Penicillium marneffei ATCC 18224]
 gi|210074207|gb|EEA28294.1| PP-loop family protein [Penicillium marneffei ATCC 18224]
          Length = 633

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 140/456 (30%), Gaps = 97/456 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I +AVSGG DSM L      +   R    +   A  VDH  RE + +E   V+   S
Sbjct: 42  PRRIGIAVSGGPDSMALAYLCRQLQITRPELNLDVKAFVVDHKFREESTEEAHMVTKWLS 101

Query: 79  RLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L I   V++       + K Q      AR  RY  +           ++  H  DD +E
Sbjct: 102 NLDIQSEVLTLDWLPGESPKKQMAFETLARTKRYQALGIACLENRLNTLLIGHHLDDNVE 161

Query: 134 TVYMRSQRDYAEKGMG-------------------------LSGMCDTILYD-------- 160
           T  +R       +G+                          + G   +  +D        
Sbjct: 162 TGLLRMTPTAQLEGLAGIAPVARIPECHGLWGVSESGSIETIRGRQRSFEFDLKEGKMTH 221

Query: 161 ------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRF 207
                         + + RP L   +  I     +  + +  DP+N+D     R  +R  
Sbjct: 222 FSTVDWKFDMTTGGVLLCRPLLPFYKSSILETCREAKVPYVTDPTNSDPTLTIRNTIRNL 281

Query: 208 VRDIDLHA--LYLKMKKF-QDLRVKVNNAVAM---LIPKYLTV---HMRSIIAISQDILN 258
           +    L        M  F  + RV + + ++    L+     +      S + +    L 
Sbjct: 282 LASDKLPRALRPASMSTFLANNRVSLLDIMSETDKLLRDCQLLKFYPNTSTMEVMFPTLP 341

Query: 259 IDS------TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG-----KRGCVSIGRV 307
           I S       +L   LR    I   +  +       R+            +R   ++  V
Sbjct: 342 IHSSDAQNYRILAAALRRIVNIITPRPEV--KNQALRLYERFAHEIFTGQQRNDFTVAGV 399

Query: 308 VIDRRA-----------NFLW-ITR--------AVRNLPTLILYPEETTVWDGRYQFQ-- 345
               +            + +W I+R         +  +  L        +WD RY FQ  
Sbjct: 400 HFRLQESPNNKDTGVLFDNIWHISRTPFMAGTEPILEIDNLSDEWSTPVLWDNRYWFQFR 459

Query: 346 -NLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSM 380
            N   +     P     AD     P  ++   L+S+
Sbjct: 460 FNRESASDPNDPLKAGSADGAE-RPSALSAEELASL 494


>gi|152993772|ref|YP_001359493.1| tRNA-lysidine synthase [Sulfurovum sp. NBC37-1]
 gi|151425633|dbj|BAF73136.1| tRNA-lysidine synthase [Sulfurovum sp. NBC37-1]
          Length = 323

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 113/294 (38%), Gaps = 26/294 (8%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A S G DS  L   L           I+F    VD+ +RE +K+E+ +   +    ++  
Sbjct: 16  AFSAGVDSSALFFLLIE-------NNIRFDIAIVDYNIREQSKNELAHAKALAKEHKLFC 68

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
             +  +     T   + AR+ RY       +T     ++TAH  +DQLE + MR  +   
Sbjct: 69  HTI--QAPMFDTHFESKARKFRYKFFESLIQTEGYDNLITAHQLNDQLEWLLMRLTKGAG 126

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
                L G+ + + +  N  + RP L   ++++  +L + N  +  D SN D ++ER   
Sbjct: 127 VSE--LIGL-EPVTHRENYTLVRPLLEYSKDELLIYLKENNHPYFIDESNIDVKYERNLF 183

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           R+   D  +      +K+  D   K   ++        T     II +           +
Sbjct: 184 RKQFSDPLIAKYKEGIKRSFDYLRKDKKSLEKDFETIFTEKKLKIIKLH---------TI 234

Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
              ++ +         L      + +     + ++  V  G  V++ + + L+I
Sbjct: 235 SAKIKAADLSLKELGYLLSAAQRQEI-----AKEQTLVIGGEWVVEIQDDLLYI 283


>gi|124026824|ref|YP_001015939.1| ATPase [Prochlorococcus marinus str. NATL1A]
 gi|254789040|sp|A2C5B5|TILS_PROM1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|123961892|gb|ABM76675.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. NATL1A]
          Length = 326

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 115/320 (35%), Gaps = 27/320 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + IL+A+SGG DSM LL  +  +   +   K +      +H     ++     +  
Sbjct: 14  LPSNSTILLAISGGQDSMALLKLIIDL---KRLHKWQVEIWHGNHQWHSKSEKTEEELKL 70

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK-------TINATLIMTAHTF 128
            C + +I+    S K  K +      AR+ RY  +   AK           T I+T HT 
Sbjct: 71  WCLKNQISFH--SNKADKKEVANEEKARDWRYKNLIMKAKFLSSKNIHFPCTRILTGHTA 128

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D+ ETV M   R       GL+ + +    + N+ ++RP L   R +        N+  
Sbjct: 129 TDRAETVIMNLARGT--DLTGLTTLKEQRTIESNIDLTRPLLIFNRNETLEICKDFNLPI 186

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             DPSN +    R ++R+ +    L  L    K        V N +             +
Sbjct: 187 WIDPSNENINLTRNKIRKEI----LPILNSIYKGADSRIASVANRLESYNEDQKLFAKIA 242

Query: 249 IIAISQDILNIDSTLLFYLLR---VSAAICGGQISLPGYR----SMERVMLFLKSGKRG- 300
           I     + +N  S +  + L        +     ++   R     +E +   +   K   
Sbjct: 243 IQFCQGEKINSLSRIKLFGLTNSIRQIILSNWLKTMGVKRITALQIEEINTKVSQRKPPG 302

Query: 301 CVSIGR-VVIDRRANFLWIT 319
            + +    +I      ++I+
Sbjct: 303 SIHLHGDFLIRWNKEAIYIS 322


>gi|260887811|ref|ZP_05899074.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185]
 gi|260862487|gb|EEX76987.1| tRNA(Ile)-lysidine synthase [Selenomonas sputigena ATCC 35185]
          Length = 500

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/406 (20%), Positives = 134/406 (33%), Gaps = 42/406 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVS 74
           L + + I+VAVSGG+DSM LL  L  +   R+   +       +H +R E ++++  YV+
Sbjct: 15  LAHGSSIVVAVSGGADSMALLDLLLHLQERRA---LSLHVAHFEHGIRGEASREDADYVA 71

Query: 75  DVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             C    +A SV    V     + +  L  AARE RYA +      + A  I  AH  DD
Sbjct: 72  AFCRARGVACSVEAADVPQYAKERRMSLETAARELRYAFLRRVRACVGAQAIAVAHHADD 131

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV     R     G GL G+        +  + RP L C +E++ +      I    
Sbjct: 132 QAETVLQHILR-----GAGLHGLVGMTPRTGD--VVRPLLACTKEELVAHCAAHGIEVRH 184

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHMRSI 249
           D +N      R  +R  +    L  L   +       +      A      L  +   + 
Sbjct: 185 DATNDAAEARRNYLRLEI----LPRLTAHINASAGAALVRLAEAARADDALLDEMAHAAF 240

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
             +              L     A       L   R + R+       +           
Sbjct: 241 SRVVCGEGRAAGAAHESLALSRTAF--RAEPLALQRRIVRLAARAFVDES---------- 288

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWD----GRYQFQNLSDSLIQIGPQSYRKADVP 365
                  W  R V  +  +++       WD     R+         +    ++  +    
Sbjct: 289 -----HDWGWRQVEQVRRMMVEGRGGLSWDLPGCVRFFLDGKRGVFLVGAIRTAHEEGGA 343

Query: 366 SGIPPIIAQRALS-SMPSKEGGKPLLAPFSRFMTKFDLPVAYAFSI 410
            G P    + A   +      G PL AP +  +    + +   F  
Sbjct: 344 GGRPLSSHRTAGGMAESDLLSGIPLRAPGATRLPALGIALVADFVR 389


>gi|120610995|ref|YP_970673.1| tRNA(Ile)-lysidine synthetase [Acidovorax citrulli AAC00-1]
 gi|120589459|gb|ABM32899.1| tRNA(Ile)-lysidine synthetase [Acidovorax citrulli AAC00-1]
          Length = 347

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 115/339 (33%), Gaps = 55/339 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA+SGG+DS  LL A             +  A+ V H L+  A     +   +C RL
Sbjct: 17  PLGVALSGGADSTALLHACAQRWPG------QVHALHVHHGLQAAADGFETHCRALCGRL 70

Query: 81  RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL------------------ 121
            +   +               AAR+ RY  + + A                         
Sbjct: 71  GVPLRIARVDARHAGGESPEDAARQRRYEALRDLAGGQQGAHQAGTDGVMPEMEAGQGGP 130

Query: 122 ------------------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
                             +  A   DDQ+ETV +   R     G+              +
Sbjct: 131 GGDGDPDRPAAGRPVLASVALAQHADDQVETVLLALSRGAGVAGLAAM---PAFWRRGGI 187

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
              RP L     D+R++L  R   W EDP+N D+R+ R R+R  +    L A + + +  
Sbjct: 188 DWHRPLLDVAGADVRAWLTARGEGWVEDPTNADERYTRNRIRAGLLP-ALQAAFPQFRDT 246

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRS------IIAISQDILNIDSTLLFYLLRVSAAICGG 277
                      A+L+ +     +++      I  +        + LL + LR + A    
Sbjct: 247 FARSASHAAEAAVLLRELAGADLQATGLPPRIAVLRALGRERQANLLRHWLRTAHATTPT 306

Query: 278 QISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
              L     ++++      G R  + +GR  + R+ + L
Sbjct: 307 AAQL--GELLDQIAACATRGHRIRIKVGRGFVVRQGDEL 343


>gi|294085869|ref|YP_003552629.1| putative ATPase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292665444|gb|ADE40545.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 444

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 146/365 (40%), Gaps = 25/365 (6%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+SGG+DS  L + +               AI VDH +RE A  E   V+    +  I  
Sbjct: 34  ALSGGADSTALCLLMSRFAVASGKAH---RAIIVDHGIRENAGAEAARVAARMQKFGINV 90

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            +    +  P+TG+ A AR  R+ ++  HA+  NA  ++  H   DQ ET+ MR  +D  
Sbjct: 91  KIEKVSDKAPETGIQAWARRQRFEIMLAHARRDNA-ALLVGHHAGDQAETIAMRLGKDSG 149

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
              +GL+GM  T  +   + I RP L    + +          + +DPSN D RFER+R+
Sbjct: 150 L--VGLAGMKRT-SWRAGVPIGRPLLDWPADRMADICRIFACEFEDDPSNLDRRFERIRL 206

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVK----VNNAVAMLIPKYLTVHMRSIIAISQ------ 254
           R+F+  +   A   K+ +  D   +    ++  +A  + + + +       +        
Sbjct: 207 RQFM--MQDKAYGAKLCRLGDAARQLLAMLDQTLADSLARDIRLDAAGYARLPDYRTDTK 264

Query: 255 -----DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
                 + ++        +       GGQ   P Y ++ R+   ++ G    +S   V  
Sbjct: 265 HDATTYLADMPEIAWHRAMGRLLHQVGGQTYAPSYEALCRLRTRMQRGLSSTLSACLVTP 324

Query: 310 DRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQN-LSDSLIQIGPQSYRKADVPSGI 368
               ++L +    R L    +  +   ++ G +   + +   ++  G     +    + +
Sbjct: 325 AGNTDYLVVREVGRTLQEQPVETDLDAIFAGCWHVTSKIPGKVLAFGHTKLAQTPSRAAL 384

Query: 369 PPIIA 373
           PP   
Sbjct: 385 PPEWD 389


>gi|197294532|ref|YP_001799073.1| Cell cycle protein [Candidatus Phytoplasma australiense]
 gi|171853859|emb|CAM11821.1| Cell cycle protein [Candidatus Phytoplasma australiense]
          Length = 435

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 18/249 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++AVSGG DSM LL  L S        K K   +  +H  R  A  +   +   C + +I
Sbjct: 14  IIAVSGGVDSMVLLDFLWS-------QKYKLKVVHFNHLKRLNAIKDKNLIQSYCDQRKI 66

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                 ++           AR  R   + + AK      ++TAH  DD  ET+  +  R 
Sbjct: 67  PFY--YFELQLNPQNFQTEARLLRQEKLKQIAKKYQTPYVITAHHLDDLAETILQKISRG 124

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                +G SGM   + ++  +++ +PFL   + +I ++  +  I++  D +N  D ++R 
Sbjct: 125 STL--LGYSGMQPKLFFEEFIFL-KPFLYLAKAEIIAYAQKNKIAYLSDYTNQLDIYQRN 181

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRV--KVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           ++R  V    +  L  K    Q+++    + +     I K     ++   A  +   +  
Sbjct: 182 QIRNHV----IPYLKEKTNFLQNIKKFSCLLSETQDFIRKQTLFFIQHNKAPKESFFSFQ 237

Query: 261 STLLFYLLR 269
               F+L++
Sbjct: 238 KDTNFFLIK 246


>gi|327297324|ref|XP_003233356.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892]
 gi|326464662|gb|EGD90115.1| hypothetical protein TERG_06349 [Trichophyton rubrum CBS 118892]
          Length = 806

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 107/322 (33%), Gaps = 59/322 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I +AVSGGSDSM L      +++      ++ +A  VDH  R  +  E + V+     L
Sbjct: 75  RIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVTAYIVDHKYRPESSQEAQSVAKRVENL 134

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V++ +  +     + G    AR  RY ++ +         ++  H  DD +ET  
Sbjct: 135 GVQSKVLTLQWPEGGILTKKGFETQARMLRYQILGKACVKDGVRALLLGHHQDDNVETAL 194

Query: 137 MRSQRDYAEKGM-------------GLSG------------------MCDTILYD----- 160
           MR  + + + G+             GL G                  M  TI +      
Sbjct: 195 MRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLVTSLQDILKSTNMDGTISHPSFRMP 254

Query: 161 ---------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204
                            +++ RPF    +  + +   +  I +  D +N D  F  R  V
Sbjct: 255 SRTINFAPGQMQVSTGGIYLFRPFRSFSKSRLVATCQEHKIPFVLDSTNEDRTFTIRNTV 314

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNIDS 261
           R+ +   +L    L+      L  K             ++  +  I         + +  
Sbjct: 315 RQLLNSENLLPRALQRPSILSLVDKSREQTEKFRDLCESILKKVEILSLDTRFGTMVVKM 374

Query: 262 TLLFYLLRVSAAICGGQISLPG 283
            ++  L +        +  LP 
Sbjct: 375 PIISELPKQQINAVQARTPLPD 396


>gi|325518591|gb|EGC98254.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. TJI49]
          Length = 303

 Score =  168 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/302 (23%), Positives = 115/302 (38%), Gaps = 22/302 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGAALSGVPSDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   V +     +RL +A   +  +  +    G+ A+ARE RYA +    +   A  +  
Sbjct: 69  ADAWVAHAEATAARLGVAFDAMHVEVPRDSGLGIEASARERRYAALDAMCERHGAAALWI 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+              +   RP LR  R  +  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGACVERVRPLLRLLRAQLERYAAGR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
            ++W +D SN D R+ R  +R  V    L AL +    F+D   +     A    L+   
Sbjct: 188 ELAWIDDESNGDTRYARNALRIDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICGGQISLPGYRSMERVMLFLK 295
             +    +       L+ D+ + F       LLR      G  +       +  +M  L+
Sbjct: 244 AELDFAGVARDDGRALSRDALMAFDDERGANLLRYWMRTLG--LPGASAARLASMMHQLR 301

Query: 296 SG 297
             
Sbjct: 302 DA 303


>gi|239629122|ref|ZP_04672153.1| hypoxanthine phosphoribosyltransferase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519268|gb|EEQ59134.1| hypoxanthine phosphoribosyltransferase [Clostridiales bacterium
           1_7_47FAA]
          Length = 514

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 110/362 (30%), Gaps = 84/362 (23%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + VR  +     L     ++ AVSGG+DS+ LL  L  +  D     +K  A+ V H LR
Sbjct: 11  QRVRRTIEEYHMLDPGDRVIAAVSGGADSVCLLTLLCGMKKD---WDLKLMAVHVHHGLR 67

Query: 64  -ETAKDEVRYVSDVCSRL----RIAHSVVSWKNSKPQTG------------LMAAAR--- 103
            + A  +  +V  +C  L     I    V    S+                L   AR   
Sbjct: 68  GQEADRDADFVRALCEELEVTCHIIKVDVRKYASENGMSEEEAGRYLRYEALEREARWWE 127

Query: 104 -----------------------------EARYALISEHA----KTINAT---------L 121
                                          R            +               
Sbjct: 128 DSDGCGGEDWDCDGGRQRRDGEGRDCDGGRQRRDGEGRDCDSGRQRCGGETGDCRNKRVK 187

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AH  DDQ ET+     R     G+         +  +   I RP L   R DI  +L
Sbjct: 188 IAVAHHSDDQAETILHNLFRGSGLGGL-------KGISYVRGRIIRPLLDIGRRDIVEWL 240

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAV--- 234
            +   +W +D +N+   + R R+R  +  +    +         +   L  + +  +   
Sbjct: 241 EENGCAWVQDSTNSSGHYTRNRIRSNLLPLIEAEVNQGAAGNILRMGKLASQADEYLRAQ 300

Query: 235 -AMLIPKYLTVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVML 292
               I  ++         I  D+L  +  ++  Y++        G     G   +++V+ 
Sbjct: 301 GECWIKGHVVRDGPEHFLIPCDLLQAEPEIIRSYVVMELLKRLAGSARDLGLIHVQQVLA 360

Query: 293 FL 294
             
Sbjct: 361 LA 362


>gi|318043039|ref|ZP_07974995.1| MesJ-like protein [Synechococcus sp. CB0101]
          Length = 345

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 119/318 (37%), Gaps = 20/318 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A +L+AVSGG DSM L+  L  +       + +      DH LR  +  +   +  
Sbjct: 37  LPNGASLLLAVSGGQDSMALVGLLRDLQ---RLHQWRLQLWHGDHRLRADSSRQASELRQ 93

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                 +   + SW   +P     AAAR  RY+ +   A+   A  ++T HT  D+ ET+
Sbjct: 94  WAQHQGLVVQIESWGEPQPS---EAAARAWRYSALEAAARHCGARYVVTGHTASDRAETL 150

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R    +G  L+ +        +L + RP L   R +      Q  +    D SN+
Sbjct: 151 LLQLARGSHRRG--LASLQPQRALAADLSLVRPLLLFSRLETEEIREQLGLPLWLDASNS 208

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-- 253
           +  + R R+R+ V  +         ++   +  ++                  +      
Sbjct: 209 EPCYSRNRLRQEVLPVLEQLHPGASRRISGVAERLAQEQQSHDELLALALAGLLAEQPAP 268

Query: 254 ------QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS--IG 305
                 +D++ +++     LL+    +  G  SLP    ++ ++  L+  +        G
Sbjct: 269 EQALRRRDLIALNAANQRQLLQHWLGL-QGVSSLPA-EQLQALLRRLEPSRGPGSHALAG 326

Query: 306 RVVIDRRANFLWITRAVR 323
              +      LW++   R
Sbjct: 327 GFALHWDRQHLWLSHPNR 344


>gi|123967074|ref|YP_001012155.1| ATPase [Prochlorococcus marinus str. MIT 9515]
 gi|123201440|gb|ABM73048.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9515]
          Length = 338

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 18/253 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +   A +L++VSGG DSM LL  ++ +    ++     +    DH   E ++     + +
Sbjct: 29  IPDGAKLLISVSGGQDSMALLNLINDMKMQHNWF---VNIWHGDHQWHEKSETYALELKN 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT-------LIMTAHTF 128
            C++  I+        +K        AR+ RY  ++E A  +           ++T HT 
Sbjct: 86  YCNQKNISFFFDR--ANKQTISSEEKARDWRYKKLTERANQLFIENQKEIDIYLLTGHTN 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D  ET  +   R       GLS +    L + ++++ RP L   RED + F   + I  
Sbjct: 144 TDNAETFLLNLARGS--NYAGLSYIEKKRLLEPHIFLIRPLLIFSREDTKKFCQLQKIPI 201

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            EDP+N D + +R  +R+ +             ++  F +      N    L  K   + 
Sbjct: 202 WEDPTNYDLKIKRNLIRKKIIPTLETMYPGCSTRINNFAEKMRNFKNEQDDL-SKLAFLS 260

Query: 246 MRSIIAISQDILN 258
            +    + +++LN
Sbjct: 261 CKDTNGVKRELLN 273


>gi|71894625|ref|YP_278733.1| hypothetical protein MS53_0615 [Mycoplasma synoviae 53]
          Length = 286

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 15/189 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG+DSM LL           +         V++  R  +  +   V + C +  I 
Sbjct: 2   IAVSGGADSMFLLD---------KYKHKNIIVAHVNYNQRNDSNFDEELVRNYCEKNNIK 52

Query: 84  HSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
             ++S  K    +      AR+ARY+   +  K  N   ++ AH   D LET YM+ + +
Sbjct: 53  LEILSLNKQDFLKGNFQDWARKARYSFFEKVYKKHNCNKLLIAHHKLDFLETYYMQKESN 112

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                 G+        +  ++ + RPFL +  ++ I  F  +  I + +D SN + ++ R
Sbjct: 113 KMNFFYGI----KKRSFIFDMHVYRPFLYKYTKKQICKFCRKNKIPYRDDYSNFESKYTR 168

Query: 202 VRVRRFVRD 210
             VR+ +  
Sbjct: 169 NIVRKSLLQ 177


>gi|16330873|ref|NP_441601.1| hypothetical protein slr1278 [Synechocystis sp. PCC 6803]
 gi|6136631|sp|P74192|TILS_SYNY3 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1653367|dbj|BAA18281.1| slr1278 [Synechocystis sp. PCC 6803]
          Length = 330

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 120/313 (38%), Gaps = 21/313 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    ILVAVSGG DS+     LH +       +   +    DH    T      +V  +
Sbjct: 21  LQGTRILVAVSGGQDSL---CLLHLLNDLTKQWQWHLAVAHCDHRW-PTDAGIADHVQGL 76

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
               ++ +     ++  PQT   AAAR  RY  ++  AK  N  ++MT HT  D+ ET+ 
Sbjct: 77  AQGYKLPYFQRDAQDL-PQT--EAAARHWRYHALTAIAKAENFPVVMTGHTQSDRAETLL 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRCRREDIRSFLLQRNISWCEDP 192
               R     G+        +    +    + + RP L   R++   F  Q+ +S  ED 
Sbjct: 134 FNLVRGSGSDGLQAMNWVRNLEESGSDKSPIRLIRPLLEISRQETGDFCQQQQLSVWEDV 193

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            N    + R R+R  +          +++K     V++  A    + +      +++   
Sbjct: 194 LNEKLTYRRNRIRGELIPYLKKHFNPQVEKSLAQTVELLTAEVAYLEQVSGEIYQTLSQT 253

Query: 253 SQDILNI------DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-- 304
            Q  LN          L   ++R     C  Q   P +  +E+++  + +  R   S   
Sbjct: 254 DQKSLNCRLLSQKPLALQRRIIRQFLQSCQSQS--PNFEEIEQIVGLINAPNRSQTSSLP 311

Query: 305 GRVVIDRRANFLW 317
           G+ ++    +FL 
Sbjct: 312 GQGIVRVEGDFLR 324


>gi|226939785|ref|YP_002794858.1| MesJ [Laribacter hongkongensis HLHK9]
 gi|226714711|gb|ACO73849.1| MesJ [Laribacter hongkongensis HLHK9]
          Length = 447

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 125/373 (33%), Gaps = 35/373 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS+ LL AL    +      I   A+ V H L   A D   + SD+C  L + 
Sbjct: 38  VGLSGGVDSVVLLQALSRCATGHG---IALRAVHVHHGLSPHADDWAGFCSDLCRELSVP 94

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             +      +     + A             +   + ++  AH  DD  ETV + + R  
Sbjct: 95  LRIERVSVVRSGGQSLEAEARR---ARYAAYRNGGSRIVALAHHADDLAETVLLAALRGG 151

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G+              L + RP L  RR ++ S   Q+  SW  D SN D R+ R  
Sbjct: 152 GAHGLAAMPAWRV---HDGLTVWRPLLGWRRNELESMARQQGWSWITDESNADPRYRRNA 208

Query: 204 VRRFVRDID-------LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  V              L    ++  D    +++ +  ++ ++L V     +A+   +
Sbjct: 209 LRHAVLPHLARYWPDYPRQLARTAQRAADEACVLDDCLDAVLAQHLRVPHILPVAV---L 265

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
            +        LL       G  +S     S+     + +   R    +   V+      L
Sbjct: 266 ASRPPAWQRLLLVRWLGRFGIVVSPGWLASV--CPDWFEPSVRRESRLAGYVLLAGQGEL 323

Query: 317 WITRAVRNLPTLILYPEETTV--------WDGRYQFQNLSDSLIQIGPQ---SYRKADVP 365
            +     ++P   +  +            W GR +    +   + +        R     
Sbjct: 324 RLLP---DVPEPTMCHDWMLAEGEHAWPGWHGRLRVWRETGRGLVLPDGIIMQVRPGQAA 380

Query: 366 SGIPPIIAQRALS 378
             I   + ++AL 
Sbjct: 381 ETIRHAVGRKALK 393


>gi|170694951|ref|ZP_02886100.1| tRNA(Ile)-lysidine synthetase [Burkholderia graminis C4D1M]
 gi|170140049|gb|EDT08228.1| tRNA(Ile)-lysidine synthetase [Burkholderia graminis C4D1M]
          Length = 490

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 113/323 (34%), Gaps = 19/323 (5%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E+VR    +L   A + VA SGG DS  LL A   V      G  +  A  V H L   
Sbjct: 14  LEAVRVAFAALPASARVAVAFSGGVDSSVLLDAAVRVA-----GSSRCIAFHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +         +   V     S+     + AAAR+ARY  +           +  
Sbjct: 69  ADAWLAHCEAFAREREVEFVVRYVDVSRDAGVSVEAAARDARYRALDALCAAHRIGWLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+      +           RP L   R  I  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PEFSPAGAAAARVRPLLHLLRAQIERYASAR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKY 241
            + W +D SN D R+ R  +R  V      AL +    F+D   +  +  A    L+ + 
Sbjct: 188 ELRWIDDESNADTRYARNALRHQVTP----ALAVHFPGFRDALARTASHAASAQRLLDEL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLL----FYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
             + + ++       L+ D+ +       L  +   +            +   +  L+  
Sbjct: 244 ARIDLDAVSRDDGSALSHDALIALDDDRALNLMRYWMRSQGFIAASSARLGDALRQLREV 303

Query: 298 KRGCVSIGRVVIDRRANFLWITR 320
             G     R+ +D   + L   R
Sbjct: 304 GEGG-DGHRLRVDHAGHALRSYR 325


>gi|313158186|gb|EFR57591.1| tRNA(Ile)-lysidine synthetase [Alistipes sp. HGB5]
          Length = 447

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 101/257 (39%), Gaps = 31/257 (12%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ +E+ R ++       +   IL+ VSGG DSM +L               +      +
Sbjct: 1   MALLEAFRKYIADNDLATHDDRILLTVSGGVDSMVMLSLFTR-------SGYRVGVAHCN 53

Query: 60  HCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHA 114
             LR   + ++   V +   +  +      ++ +         +  AAR  RYA     +
Sbjct: 54  FQLRGAESDEDEVLVEEEARKYGVEFYNKRFETAAEMERTGESMEMAARRLRYAWFDALS 113

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCR 173
           +    T++  AH  DD +ET ++   R    +G+ G+S             + RP +   
Sbjct: 114 REHGYTVVAIAHHADDSIETFFINLLRGTGLRGLTGISTQVGK--------VVRPLMFAS 165

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDIDLHALYLKMKKFQDL 226
           R++I  + +   I + ED SN   ++ R ++R       R +       +   + +  D 
Sbjct: 166 RKEILEYAVANRIPFREDSSNRSTKYLRNKIRLGLIPRIREINPKFTSLMRRNIARLTDA 225

Query: 227 RVKVNNAVAMLIPKYLT 243
           ++ +N+ +  +  + +T
Sbjct: 226 QLFINHGIERIRGEAVT 242


>gi|256397528|ref|YP_003119092.1| tRNA(Ile)-lysidine synthetase [Catenulispora acidiphila DSM 44928]
 gi|256363754|gb|ACU77251.1| tRNA(Ile)-lysidine synthetase [Catenulispora acidiphila DSM 44928]
          Length = 358

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/280 (23%), Positives = 106/280 (37%), Gaps = 21/280 (7%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L     +LVA SGG+DS+ L  A   V    S   ++F  ++VDH L+E + 
Sbjct: 13  AVRKTLSGLAPGGLVLVACSGGADSIALACATAFVAPRLS---LRFGGLTVDHNLQEGSA 69

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            +   V    + L            +   G  AAAR ARY  +   A+ + A  ++  HT
Sbjct: 70  AQAERVVRFLASLGFDPVESLSVRVEGHGGPEAAARVARYGALDAAAERLGAATVLLGHT 129

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R    + +                 +RPFL   R    +        
Sbjct: 130 RDDQAETVLLGLARGSGARSLAGMPAQA-------GRYARPFLDLPRATTVAASAAEGFE 182

Query: 188 WCEDPSNTDDRFERVRVRR--------FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
             +DP N D  + R RVR          +      AL    K  ++    ++   A    
Sbjct: 183 PWDDPHNADPAYTRSRVRHAAIPALSAALGPGIPEALARTAKMLREDTEALDAWAAREFD 242

Query: 240 KYLTVHMRSIIAISQDILN---IDSTLLFYLLRVSAAICG 276
           + L       ++   D+     + + +   +LR++A   G
Sbjct: 243 RLLEPFGDCDLSHYLDVSELSVLPTAVRRRVLRLAALRAG 282


>gi|168005786|ref|XP_001755591.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693298|gb|EDQ79651.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 111/316 (35%), Gaps = 47/316 (14%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +L  P   ILVAVSGG DS+ LL  L S+     +       +  DH    +++ +  +
Sbjct: 172 HNLFRPGEKILVAVSGGQDSICLLHMLASLRDQWGWL---LGVVYCDHRWSSSSRKQGSH 228

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +S V + LRI +      +  P  GL   AR  RY ++   A     T I+TAHT  D++
Sbjct: 229 ISQVAASLRINYYQAVTTSPVPSEGL---ARTWRYGILQRIALRHGFTSIVTAHTASDRV 285

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---------------------------- 164
           ET+     R     G+        +   L+L                             
Sbjct: 286 ETLLYNLFRGSGLHGLQSLTWRRVLSPLLSLSQRTAFAPTEIVSSLAAPNGEMVEVGSSE 345

Query: 165 --ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
             + RP L   R ++R +     +    DPSN     +R R+R  +           + K
Sbjct: 346 VALVRPLLGFTRTEVREYCDLLGLPLWPDPSNMSLEIDRNRIRHQLLPYLRENFNDSVDK 405

Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID--------STLLFYLLRVSAAI 274
                 ++ +A    +       ++       D   +D          L   +L+     
Sbjct: 406 SLARCAEILHAEQQYLDSICNNILKKAETEDADGRKLDIMIMQSLPVALQRRVLKQFVEN 465

Query: 275 CGGQISLPGYRSMERV 290
             G+    G+  +ER+
Sbjct: 466 FTGRS--LGFDHVERL 479


>gi|317120982|ref|YP_004100985.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter marianensis DSM
           12885]
 gi|315590962|gb|ADU50258.1| tRNA(Ile)-lysidine synthetase [Thermaerobacter marianensis DSM
           12885]
          Length = 668

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 96/243 (39%), Gaps = 10/243 (4%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E+     R L     +LVAVSGG DS  LL  LH +               VDH LR  
Sbjct: 11  VEAFARQHRLLRPGHRVLVAVSGGRDSTVLLDLLHRLQERLGLAA--LGVAHVDHGLRPG 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + D+ R+V++  +   +   +      + +  L  AAR ARY  + E A    A  +  A
Sbjct: 69  SADDARWVAEQAAARGLPFLLRRVCVERGRRSLEDAARAARYRALREMAGEFGAHRVALA 128

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H   DQ ETV MR       +G+                  RP L      + ++   R 
Sbjct: 129 HHAGDQAETVLMRLVAGAGVRGLAGM-------RPRRGPFVRPLLAVTPARLAAYAAARG 181

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTV 244
           ++W +DP+N D R  R RVR  +  +      L+ ++    +   +     +L  +   +
Sbjct: 182 LTWRDDPTNRDLRILRNRVRHRLLPLLEAEFNLRTVETLARVATLLAAEADLLDRRTRRL 241

Query: 245 HMR 247
             R
Sbjct: 242 EAR 244


>gi|260905550|ref|ZP_05913872.1| tRNA(Ile)-lysidine synthetase [Brevibacterium linens BL2]
          Length = 292

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/301 (20%), Positives = 107/301 (35%), Gaps = 19/301 (6%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL A   +      G+++  A++VDH L+ T+ +  R V  +     +   V S    
Sbjct: 1   MALLHACAFL---HRRGELRARAVTVDHGLQPTSAEVARRVISIAESWGVPAEVSSVNVE 57

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
               GL AAAREARY  +        A  ++TAHT  DQ ETV +   R    + +    
Sbjct: 58  AGVDGLEAAAREARYDALEAARSADGADWVLTAHTRSDQAETVLLGLMRGSGTRSLAGMA 117

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +           + RP L   R    +    +NI    DP N DD F RVR R  +  ++
Sbjct: 118 L-------RTGRVVRPLLDVDRASTLASCRAQNIEVWHDPMNVDDSFARVRARSLLESLE 170

Query: 213 L---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
                 +   + +  +L     + +  L                 ++ +++  L   +LR
Sbjct: 171 ADLGQPITANLARTAELCRADADCLDELAEPSAAAVRGRTEVPLSEVADLEDALASRVLR 230

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSI-----GRVVIDRRANFLWITRAVR 323
                        G   +  ++  ++  G +G         G   +      L   R  +
Sbjct: 231 EWLISLDVPAQSFGAARISELLALIRDPGSQGRAHTRLSLPGDTEVIITGQVLRFRREAK 290

Query: 324 N 324
            
Sbjct: 291 A 291


>gi|221195339|ref|ZP_03568395.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Atopobium rimae
           ATCC 49626]
 gi|221185242|gb|EEE17633.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Atopobium rimae
           ATCC 49626]
          Length = 499

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/330 (19%), Positives = 120/330 (36%), Gaps = 36/330 (10%)

Query: 23  LVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLR-ETAKDEVRYVS 74
           ++ VSGG+DS  LL+        V   R   KI   +   + ++H LR   A+ + ++V 
Sbjct: 2   VLMVSGGADSTALLVMAATDVLDVQDGRGRAKIAQDRLCVLHINHQLRGADAEKDEQFVR 61

Query: 75  DVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATL--------I 122
            + ++  I     S       +     +  A R  RY + ++ A  +            I
Sbjct: 62  TLSAKYGITCVTRSLDIASIAAADHLNVEDAGRRVRYEIANQLANELCEQAGVPRASARI 121

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAH  +D+ ET  M   R     G+         +      I RP L     ++ ++L+
Sbjct: 122 VTAHNANDRAETFLMNVTRGTGTSGLA-------SIPRRRNRIVRPLLGFTHLELCNYLV 174

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +R ISW ED +N D  + R  +R  +           L A+        D    V+   A
Sbjct: 175 ERGISWREDLTNADTYYLRSYIRHEILPRLEVKNPQVLSAISGACDIVSDEDAYVSGVAA 234

Query: 236 MLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
             + K         + +    L   D  +   ++R++         L     +E V++ +
Sbjct: 235 RCLRKLTVREYDGYVVLDAARLAATDVVIARRVIRLAVKNLADDPRLEARH-VESVLMAV 293

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
            +G+        +        L + +A R 
Sbjct: 294 ANGRGAVNLPQDIQARIEFGTLTLAKAYRK 323


>gi|296274393|ref|YP_003657024.1| tRNA(Ile)-lysidine synthetase [Arcobacter nitrofigilis DSM 7299]
 gi|296098567|gb|ADG94517.1| tRNA(Ile)-lysidine synthetase [Arcobacter nitrofigilis DSM 7299]
          Length = 324

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 12/193 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  L   L +         I F    V++  RE +KDEV Y  ++ ++   
Sbjct: 12  LLAFSGGIDSSALFFLLLN-------ENIPFDIAIVNYNQREQSKDEVAYAKELANKYNK 64

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
               +        +     AR+ RY    +  K  +   ++TAH  +D+LE   M+  + 
Sbjct: 65  KCF-LKEAVLTNNSNFEKEARDIRYDFFDKIIKEYDYDTLITAHQLNDKLEWFMMQLSKG 123

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                + L G+ +    D N  I RP L   +E+++ FL + N  +  D SN D++++R 
Sbjct: 124 AGL--VELIGLEEKTQKD-NYVIYRPLLELSKEELQIFLQKNNHKYFIDESNYDEKYKRN 180

Query: 203 RVR-RFVRDIDLH 214
             R  FV ++   
Sbjct: 181 YFRKNFVNELIKE 193


>gi|153005200|ref|YP_001379525.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. Fw109-5]
 gi|152028773|gb|ABS26541.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. Fw109-5]
          Length = 436

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/361 (22%), Positives = 137/361 (37%), Gaps = 15/361 (4%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E++R   R L     +LVA+S G DS  LL +L  +        +  +A+ VDH LR  
Sbjct: 13  LETIRRR-RLLAAGDRVLVALSAGPDSTALLASLAELRDAGCLPGMALAALYVDHGLRPG 71

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             DE      VC RL +    V  +       + A AR ARYA +   A    AT I T 
Sbjct: 72  GADEAGSAKSVCERLGVTFESVRVRIGP--GNVQAEARRARYAALRTAALRAGATRIATG 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT  DQ ETV +R  R    +G+         +      I RP +   R +   +L +R 
Sbjct: 130 HTRTDQAETVLLRLLRGAGARGLA-------GIPPRRGAIVRPLIDRSRAEGLVYLAERG 182

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           + W  DP+N   RF R R+R  V    + AL    ++       +       + +     
Sbjct: 183 VPWRTDPTNATPRFARNRLRLEVWP-AITALAPAAERAIARAADLAREDERALARIARPL 241

Query: 246 MRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                + + + L  +       ++R   A   G+        ++ ++  ++  + G  ++
Sbjct: 242 AGEAASAALEPLRALPVAARRRVVRRLWARASGRRDGLELHHVDAILALVRRDRPGTATL 301

Query: 305 GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
              ++ R      +  A+    +  L P E     GRY       + ++I          
Sbjct: 302 PEGLVARCRYG-RLQIALPGERSTPLPPMEVAA-PGRYTLPGRGGA-VEIAAAHVGAVPW 358

Query: 365 P 365
           P
Sbjct: 359 P 359


>gi|121605781|ref|YP_983110.1| tRNA(Ile)-lysidine synthetase [Polaromonas naphthalenivorans CJ2]
 gi|254789039|sp|A1VRB1|TILS_POLNA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|120594750|gb|ABM38189.1| tRNA(Ile)-lysidine synthetase [Polaromonas naphthalenivorans CJ2]
          Length = 328

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 110/282 (39%), Gaps = 22/282 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA SGG+DS  LL+A             +  A  + H L+  A D VR    VC++ 
Sbjct: 29  PLGVAYSGGADSTALLLAAAERWPG------QVQAFHIHHGLQAAADDFVRVCESVCAKA 82

Query: 81  RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +   +V              AAR ARYA ++  A       ++     DDQ+ET+ +  
Sbjct: 83  GLPLHIVQVDARHASGESPEDAARRARYAALATAATARGMQGVLLGQHADDQVETMLLAL 142

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R     G+              +   RP L      +R +L+++ I + +DP+NTD+R+
Sbjct: 143 SRGAGLPGLSAMPAS---FGRGGMVFYRPLLHIPSAVLREWLVEQPIEFVDDPTNTDERY 199

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-----SQ 254
            R R+R  +    L AL     +F     +     A      + V  + +  +      +
Sbjct: 200 TRNRIRARL----LPALAQAFPQFHATFARSARHAAQAQAVLVEVAAQDLAVVGNPPAIK 255

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
            +  +       +LR    +   Q + P    +E+++  + +
Sbjct: 256 ALQALSPPRQANVLRHWLLL---QYATPSAAQLEQLLHQVAA 294


>gi|254457083|ref|ZP_05070511.1| tRNA(Ile)-lysidine synthetase [Campylobacterales bacterium GD 1]
 gi|207085875|gb|EDZ63159.1| tRNA(Ile)-lysidine synthetase [Campylobacterales bacterium GD 1]
          Length = 333

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 99/267 (37%), Gaps = 16/267 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L+     L+A SGG+DS  L   L           IKF    V++  R  +  EV Y  
Sbjct: 8   ELLKNKKNLLAFSGGADSTALFFLLLK-------QNIKFDIAIVNYNERVQSIKEVEYAK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++ S+  +    +   + K      + ARE RY    +         ++TAH   D+ E 
Sbjct: 61  ELASKYNLECHTLV--SPKISKNFESKAREIRYDFFEKLISEYGYDNLLTAHHLGDRFEW 118

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + M+  +      +          +     + RP L   ++++  +L + NI + ED +N
Sbjct: 119 MLMQFCKGAGCAEIAGMQKVQQREF---YTLVRPLLHLDKQELYEYLGRDNIKYFEDETN 175

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-S 253
            ++  +R   R       L      +KK  D    +++    LIP+    H+  +    S
Sbjct: 176 LNETIKRNSFRHNYSAPLLDKYLSGIKKSFDY---LDDDRETLIPEVEIRHIDDLSYFKS 232

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQIS 280
                 D  ++  +L+    +      
Sbjct: 233 MQKQRADIFIIDKILKSKLYMLSANER 259


>gi|83859796|ref|ZP_00953316.1| hypothetical protein OA2633_07344 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852155|gb|EAP90009.1| hypothetical protein OA2633_07344 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 427

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 158/385 (41%), Gaps = 30/385 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +  SGG DS  LL AL +      F  +   A+ VDH LR  + +E    +D    L 
Sbjct: 5   LALGYSGGGDSTALLHALKAC-----FPDVALHALIVDHSLRPESAEEAADNADYARDLG 59

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
               ++ W + +        AR A   L++   + +  +L+   HT DD++ET+ MR+ R
Sbjct: 60  AEPHILRWSSPRKNQAAARQARHA---LLAGACEGLGVSLLCLGHTLDDRIETLRMRANR 116

Query: 142 DYAEK---GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
               +   GM             NL ++RP L  RR+++R++L +    W +DPSN D +
Sbjct: 117 KGGWRTLTGMTALDASPIWPEGRNLTVARPLLEMRRDELRTYLRRIKARWVDDPSNDDAQ 176

Query: 199 FERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           FER+R+R+        A   L     +  D    +  A   L  + + +       + +D
Sbjct: 177 FERIRLRQEAYPPGGPAEQSLLSLSDQSLDAERLLRGAAWRLTERAVEITPWGGAVLDRD 236

Query: 256 ILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID---R 311
              +    +    L        G+  LP    +E  +  L+ G+    +   +  +    
Sbjct: 237 KFALAARPMALRALEAVMMAVSGEARLPTPEGVEACLDALEQGEAHTQAGVLLTAEGLMG 296

Query: 312 RANFLWITRAVRNLPT--LILYPEETTVWDGRYQFQNLSDSLIQ-----IGPQSYRKADV 364
           R     + RA        L L   +T ++DGR++ Q      I+       P   + +D+
Sbjct: 297 RDPGAVLGRADGGAEALRLELEAGDTALFDGRFEIQAPEACRIEALGDRAAPDGTQLSDI 356

Query: 365 PSGIPPIIAQRALSSMPSKEGGKPL 389
           P  +     +R+L+ + S++G   L
Sbjct: 357 PPSL-----RRSLTVLVSQQGDDIL 376


>gi|332638692|ref|ZP_08417555.1| tRNA(Ile)-lysidine synthase [Weissella cibaria KACC 11862]
          Length = 325

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 12/226 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-V 76
              H+LVAVSGG DS+ LL  L    +  +  +   SA  V+H LR+ A  E   V    
Sbjct: 22  QHDHVLVAVSGGQDSLHLLRWLTE-GTLPADVQPTVSAGYVNHQLRDDAAAEEALVRRTF 80

Query: 77  CSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +   +A+     ++W+   P   +   ARE RY  + + A+ + A +I+TAH   DQ+E
Sbjct: 81  AATPHLAYGLIETLTWEAV-PTVAVEEQAREKRYEALIKMAREVGANIIVTAHHQGDQVE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+  +  R    +   L GM        ++ ++RP L   + D+   ++Q    W ED +
Sbjct: 140 TILYKLTRGS--RLTQLVGMAPRQQLRGDIDLARPLLNLTKADLADLVIQPLTEWVEDYT 197

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           N D+ F R R+R+ V    L AL    ++  +  V     +A L  
Sbjct: 198 NADETFARNRMRQTV----LPALTSINEQAAEHVVTFATQLAALQK 239


>gi|195867457|ref|ZP_03079461.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|209554128|ref|YP_002284496.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|195660933|gb|EDX54186.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|209541629|gb|ACI59858.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 326

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L AVSGG DSM +L         R+          V++  RE+A  +   V D 
Sbjct: 12  ITNKKYLAAVSGGPDSMAMLNM-----YKRNIS----VVCHVNYHKRESADRDQEIVVDF 62

Query: 77  CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           C +  +   ++       +         A AR  RY    E  K  N   +  AH FDD 
Sbjct: 63  CKKNNLPIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDF 122

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET YM+  R       G+            + + RP L  R++ ++ +  +  I +  D
Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVVNGMIVKRPVLFIRKQTLQRYCDENKIKYGID 178

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY 217
            +N  D +ER RVR+ + +  L+ +Y
Sbjct: 179 ETNELDIYERNRVRKTISNWSLNEVY 204


>gi|185178872|ref|ZP_02964645.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188024358|ref|ZP_02997027.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188518716|ref|ZP_03004137.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|188524149|ref|ZP_03004218.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|225550464|ref|ZP_03771413.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225551442|ref|ZP_03772388.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|184209509|gb|EDU06552.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|188018624|gb|EDU56664.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997679|gb|EDU66776.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195659937|gb|EDX53317.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|225379257|gb|EEH01622.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|225379618|gb|EEH01980.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 326

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L AVSGG DSM +L         R+          V++  RE+A  +   V D 
Sbjct: 12  ITNKKYLAAVSGGPDSMAMLNM-----YKRNIS----VVCHVNYHKRESADRDQEIVVDF 62

Query: 77  CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           C +  +   ++       +         A AR  RY    E  K  N   +  AH FDD 
Sbjct: 63  CKKNNLPIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDF 122

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET YM+  R       G+            + + RP L  R++ ++ +  +  I +  D
Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVVNGMIVKRPVLFIRKQTLQRYCDENKIKYGID 178

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY 217
            +N  D +ER RVR+ + +  L+ +Y
Sbjct: 179 ETNELDIYERNRVRKTISNWSLNEVY 204


>gi|255020986|ref|ZP_05293041.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus caldus ATCC 51756]
 gi|254969591|gb|EET27098.1| tRNA(Ile)-lysidine synthetase [Acidithiobacillus caldus ATCC 51756]
          Length = 465

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/333 (18%), Positives = 120/333 (36%), Gaps = 28/333 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +++A SGG DS  L  ALH++  D       F A  VDH     + +     ++
Sbjct: 19  LAPTRPVILAFSGGRDSTALFWALHAIGQD-------FVAAHVDHGWHPRSAEWAARCAE 71

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           V +   +   +          G    AR  RYA +           ++TA   DDQ ET 
Sbjct: 72  VAASAGVPFVLRQLGKDLCGEGPEDVARRGRYAALQSLL--GPGQFLLTAQHRDDQAETF 129

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +++ R     G+        +    +  ++RP L C  + ++ +L +R + W EDP+N 
Sbjct: 130 LLQALRGAGAAGLAAMPWRRPL---GSGVLARPLLDCSGQTLQGYLHRRGLQWIEDPANR 186

Query: 196 DDRFERVRV-RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
           D RF R RV R+F+  +                  + + + +    +  +      A  +
Sbjct: 187 DPRFARSRVRRQFIPALVRCGWSDPATPIARSAANLADTLQVEADWFRRMWRDYCRACPE 246

Query: 255 D---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF-LKSGKRGCVSI 304
                      L      L  +          ++S P +  ++ ++    +      ++ 
Sbjct: 247 KGAEPRLSLAFLRTLPESLHRVFLRQYLRH-RRLSPPNHEDLQTLLARTAQPAHGQRLAW 305

Query: 305 GRVVIDRRANFLWITRAVRNL----PTLILYPE 333
             V    +  +LW+  A  +     P    +P+
Sbjct: 306 PGVEAWVQGGWLWLWPADLHWGEGGPQGTWWPQ 338


>gi|85707586|ref|ZP_01038652.1| ATPase [Erythrobacter sp. NAP1]
 gi|85689120|gb|EAQ29123.1| ATPase [Erythrobacter sp. NAP1]
          Length = 292

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 10/264 (3%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
             + +S+DH +R  A  EV +V  +C  L +  +  S K +     L A AREARYA + 
Sbjct: 11  DIAVMSIDHGIRPEAAREVAFVETICQSLDVPFT--SAKVTLGAGNLQAKAREARYAALV 68

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A       + TAH  DDQ ET+ MR  R     G+       T L   ++ + RP L 
Sbjct: 69  QWAAQQKIGHVATAHHIDDQAETLLMRLARGSGLPGLAGVREW-THLPGSDVPLIRPLLG 127

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRV 228
            R+ ++ + +    I+   DPSN +  F+RVRVR+ + +   +D  AL        +   
Sbjct: 128 FRKAELEAVVASAGITPVSDPSNENPAFDRVRVRQHLAEHDWLDAEALATSAHHLAEGWR 187

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAIS-QDILNIDSTLLFYLLRVSAAICGGQISLP-GYRS 286
            +     +   + ++       A   +   N+   +    +    +  GG++S      +
Sbjct: 188 ALEWYAQLDWEEMVSREDTPEGAPQYRYYCNVPRAIQIETVSRIVSALGGRVSRSEAGNA 247

Query: 287 MERVMLFLKSGKRGCVSIGRVVID 310
            +R+             +GR  I+
Sbjct: 248 ADRLWRG--ENASLGGVLGRCEIE 269


>gi|300870722|ref|YP_003785593.1| putative cell cycle protein MesJ [Brachyspira pilosicoli 95/1000]
 gi|300688421|gb|ADK31092.1| putative Cell cycle protein, MesJ [Brachyspira pilosicoli 95/1000]
          Length = 455

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 13/202 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
            VA SGG DS  LL   + +    ++      AI V++ LR E +  +  +  +      
Sbjct: 38  AVAYSGGIDSQVLLNIAYKLKDKLNY---NLIAIHVNYNLRGEESIGDEMFARETAKNYN 94

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I   V    K S         AR+ RY    E         ++ AH  DD  ET+  R  
Sbjct: 95  IDIYVKHIEKGSYNNKNTQLEARKDRYLFFKELYNKKIYDYLLIAHNKDDLTETIIYRMI 154

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           +                L     ++ RP L   R+DI  +  + ++S  ED SN  +++ 
Sbjct: 155 KGSGTN-------IYKALSKKRKYVLRPILNFYRKDIEEYAKENSLSHREDSSNKTNKYS 207

Query: 201 RVRVRRFVRDIDLHALYLKMKK 222
           R ++R  +  + L  + L+ K 
Sbjct: 208 RNKLRNVIIPM-LEEINLQAKN 228


>gi|317482117|ref|ZP_07941141.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium sp. 12_1_47BFAA]
 gi|291516361|emb|CBK69977.1| tRNA(Ile)-lysidine synthetase, N-terminal domain [Bifidobacterium
           longum subsp. longum F8]
 gi|316916476|gb|EFV37874.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 388

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 101/243 (41%), Gaps = 16/243 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +      ++   + VDH L+E ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCTSMG---VRCGVVIVDHGLQEGSEQVAGEAADRCRALG 102

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +V          GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV +   
Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R        L+GM         +  +RP L   R++         + + +DP+N D    
Sbjct: 163 RSRGVD--ALAGMPQVFT-RSGVTFARPLLTLTRDETTGLCEDLGVEYWDDPTNGDAVDG 219

Query: 197 ---DRF-ERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
              D +  R RVR  +   I+  A +   + F +           L  +   V   ++ A
Sbjct: 220 ELPDDYPLRSRVRHDLLPAIERFAGFNVTRHFAESAQLARMDKEYLDQRSDEVMGEAVTA 279

Query: 252 ISQ 254
           + +
Sbjct: 280 VDR 282


>gi|239906277|ref|YP_002953017.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1]
 gi|239796142|dbj|BAH75131.1| tRNA(Ile)-lysidine synthase [Desulfovibrio magneticus RS-1]
          Length = 330

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/309 (21%), Positives = 111/309 (35%), Gaps = 15/309 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              A  +VA SGG DS+ LL     +            A  +DH LR  +  E   V  +
Sbjct: 13  PAGATWIVACSGGPDSVALLAMAAILRERLGLAG--LLAAHLDHGLRPESGTEAEAVGAL 70

Query: 77  CSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           C +L +      + V+    + +TG+  A R+AR A  ++     +   ++T H  +D  
Sbjct: 71  CRKLGLGCLSDRADVAAMARERRTGVEDAGRQARQAFFADCLAGRDNAWVLTGHQLNDLA 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E   MR  R      +G     D     L   +  P           F     +   +DP
Sbjct: 131 EDQLMRVTRGAGWPALGGMAALDPARRLLRPLLLTPRSAVT-----EFTAALGLPTMDDP 185

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL--RVKVNNAVAMLIPKYLTVHMRSII 250
           SN D  + R RVR  +  + L      +     L  + +++ A    +           +
Sbjct: 186 SNADPAYLRNRVRHGLLPLVLQENPRALDAAARLWRQARLDAAYFDEVLPVTVPDEGGTV 245

Query: 251 AISQDILNIDSTLLFYLL--RVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
            +S+ +L+     L   L  R   A+  GQ    G  ++E       +G+      G+ V
Sbjct: 246 RLSRTLLSGLHPTLRTRLYARALDALGPGQALADGLAALEAAYARRDTGRVFQFPGGKTV 305

Query: 309 IDRRANFLW 317
              R   ++
Sbjct: 306 RVAREGLVF 314


>gi|239621577|ref|ZP_04664608.1| hypoxanthine phosphoribosyltransferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515452|gb|EEQ55319.1| hypoxanthine phosphoribosyltransferase [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 388

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 16/243 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +      ++  A+ VDH L+E ++      ++ C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQEGSEQVAGEAANRCRALG 102

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +V          GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV +   
Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R        L+GM         +  +RP L   R++         + + +DP+N D    
Sbjct: 163 RSRGVD--ALAGMPQVFT-RSGVTFARPLLTLTRDETTGLCEDLGVEYWDDPTNGDAVDG 219

Query: 197 ---DRF-ERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
              D +  R RVR  +   I+  A +   + F +           L  +   V   ++ A
Sbjct: 220 ELPDDYPLRSRVRHDLLPAIERFAGFNVTRHFAESAQLARMDKEYLDQRSDEVMGEAVTA 279

Query: 252 ISQ 254
           + +
Sbjct: 280 VDR 282


>gi|213691452|ref|YP_002322038.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|296454758|ref|YP_003661901.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|254789034|sp|B7GP48|TILS_BIFLI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|213522913|gb|ACJ51660.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|296184189|gb|ADH01071.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|320457524|dbj|BAJ68145.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 388

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 15/229 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +      ++  A+ VDH L+E ++      ++ C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQEGSEQVAGEAANRCRALG 102

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +V          GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV +   
Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R        L+GM         +  +RP L   R +         + + +DP+N D    
Sbjct: 163 RSRGVD--ALAGMPQVFT-RSGVTFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219

Query: 197 ---DRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              + +  R RVR  +           + +      ++       + + 
Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVARHFAESARLARMDKEYLDQR 268


>gi|23336235|ref|ZP_00121460.1| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Bifidobacterium longum DJO10A]
 gi|189440708|ref|YP_001955789.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum DJO10A]
 gi|226695535|sp|B3DR08|TILS_BIFLD RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|189429143|gb|ACD99291.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum DJO10A]
          Length = 388

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +      ++   + VDH L+E ++      ++ C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCTSMG---VRCGVVIVDHGLQEGSEQVAGEAANRCRALG 102

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +V          GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV +   
Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R        L+GM         +  +RP L   R +         + + +DP+N D    
Sbjct: 163 RSRGVD--ALAGMPQVFTR-SGVTFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219

Query: 197 ---DRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              + +  R RVR  +           + +      ++       + + 
Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVTRHFAESARLARMDKEYLDQR 268


>gi|161524379|ref|YP_001579391.1| tRNA(Ile)-lysidine synthetase [Burkholderia multivorans ATCC 17616]
 gi|189350866|ref|YP_001946494.1| cell cycle protein [Burkholderia multivorans ATCC 17616]
 gi|160341808|gb|ABX14894.1| tRNA(Ile)-lysidine synthetase [Burkholderia multivorans ATCC 17616]
 gi|189334888|dbj|BAG43958.1| cell cycle protein [Burkholderia multivorans ATCC 17616]
          Length = 468

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 143/401 (35%), Gaps = 31/401 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGVPDGARIAIAYSGGLDSSVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A     +  +  +RL +A   +     +    G+ A+ARE RYA +        A  +  
Sbjct: 69  ADAWAAHAREQAARLGVAFEAMHVDVPRDSGVGIEASARERRYAALDAMCARHGAAALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RP LR  R  +  +  + 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPLLRLLRAQLERYAAEH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
            +SW +D SN D R+ R  +R  V    L AL +    F+D   +     A    L+   
Sbjct: 188 ALSWIDDESNADTRYARNALRIDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294
             +   +        L+ D+ + F       LLR      G    S      M R +   
Sbjct: 244 AELDFAAAARDDGRALSRDALIAFDDVRGANLLRYWMRRLGLPGASAARLADMMRQLRDA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++         R+  T   + + +  WDG+  ++     
Sbjct: 304 HDAHALRVDHAGQCLRLYRDTVYWEAGDSAEPRDDGTGTPHADASLAWDGQEIWRLPGWR 363

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389
            + +     +         +P  + + A     ++ GG+ +
Sbjct: 364 GTFVFARADAGS----DDALPETLLRSAPLIARARAGGERM 400


>gi|283781738|ref|YP_003372493.1| tRNA(Ile)-lysidine synthetase [Pirellula staleyi DSM 6068]
 gi|283440191|gb|ADB18633.1| tRNA(Ile)-lysidine synthetase [Pirellula staleyi DSM 6068]
          Length = 306

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 17/276 (6%)

Query: 33  MGLLIALHSVLSDRSFG----KIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVV 87
           M LL  +  + +    G    + +   +  +H LR  A D +  +V ++   ++      
Sbjct: 1   MALLRGMAELAARCEPGTSRAEPRIVVLHFNHQLRGEAADADEAFVVELARGMQRECCTG 60

Query: 88  S--WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145
                      G+ AAAREARY   ++ A+      ++T HT +DQLETV  R  R    
Sbjct: 61  RPLQPIVATGGGMEAAAREARYHFFTQAAEARGCRYVITGHTENDQLETVLFRMLRGTGI 120

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
              G++GM         + + RP L   R ++  +L   +  +C+D +N +D F R R+R
Sbjct: 121 --AGIAGMPRARTLSPAVTLLRPMLSITRSEVLEYLASLDQPYCDDATNDEDTFTRNRIR 178

Query: 206 RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL---NIDST 262
             V  +  H +    +    L  +   A   ++ + +     S++   ++ +     + T
Sbjct: 179 NLVLPMLEHEMPGCSEALLRLSSQAAQAQ-QIVDRLVLAQFDSLVESRENRVLVSRPNET 237

Query: 263 LLFYLLRVSAAICGGQISLPG----YRSMERVMLFL 294
           +  YL+         Q + P      + +E+++  L
Sbjct: 238 IEPYLVAEILVHVWKQQNWPRKDLTQKHLEQLVGLL 273


>gi|323526545|ref|YP_004228698.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1001]
 gi|323383547|gb|ADX55638.1| tRNA(Ile)-lysidine synthetase [Burkholderia sp. CCGE1001]
          Length = 493

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 87/422 (20%), Positives = 146/422 (34%), Gaps = 49/422 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E+V   +R+L   A I +A+SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LEAVGAALRALSADARIGIALSGGVDSSVLLDA-----AARVAGASRCVALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +         +  +      S+     + AAAR+ARY  +           +  
Sbjct: 69  ADAWLVHCEAFARERGVEFAARRVDVSRDAGVSVEAAARDARYRALDALCTERGIHSLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+      +           RP L   R  I  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PELSPEGAAAKRVRPLLHVLRAQIEHYASAR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           ++ W +D SN D R+ R  +R  V      AL +    F+D   +     A        +
Sbjct: 188 HLRWIDDESNADTRYARNALRHEVTP----ALTVHFPGFRDALARTAAHAAAAQRLLDAL 243

Query: 245 HMRSIIAISQD---------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
               + A+S+D         ++ +D      LLR    +            +   +  L+
Sbjct: 244 ARIDLEAVSRDGGRALAHDALIALDDDRALNLLRYW--MRQQGFIAASSARLGDALRQLR 301

Query: 296 S------GKRGCVSIGRVVIDRRANFL---------------WITRAVRNLPTLILYPEE 334
                  G R  +      +      +               +  R +  L         
Sbjct: 302 EVGADGDGHRLRIDHAGHALRSYRGLVHWEAGDSRDPADESAFTEREIGELAWQGQAIWR 361

Query: 335 TTVWDGRYQFQNLSDSLIQIGPQSYRKADVPS-----GIPPIIAQRALSSMPSKEGGKPL 389
              W G + FQ   D+ I     +  +A+ P+      IP  + +RA+ S  S+ GG+ +
Sbjct: 362 LPQWRGTFIFQ-PVDASITDRANTADRANTPNPAADDAIPASLLRRAVLSARSRRGGERM 420

Query: 390 LA 391
             
Sbjct: 421 RT 422


>gi|221198379|ref|ZP_03571425.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2M]
 gi|221208944|ref|ZP_03581941.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2]
 gi|221171227|gb|EEE03677.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2]
 gi|221182311|gb|EEE14712.1| tRNA(Ile)-lysidine synthase [Burkholderia multivorans CGD2M]
          Length = 468

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 142/399 (35%), Gaps = 27/399 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGVPDGARIAIAYSGGLDSSVLLDAAVRVA-----GASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A     +  +  +RL +A   +     +    G+ A+ARE RYA +        A  +  
Sbjct: 69  ADAWAAHAREQAARLGVAFEAMHVDVPRDSGVGIEASARERRYAALDAMCARHGAAALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RP LR  R  +  +  + 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPDGASVERVRPLLRLLRAQLERYAAEH 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
            +SW +D SN D R+ R  +R  V    L AL +    F+D   +     A    L+   
Sbjct: 188 ALSWIDDESNADTRYARNALRIDV----LPALAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294
             +   +        L+ D+ + F       LLR      G    S      M R +   
Sbjct: 244 AELDFVAAARDDGRALSRDALIAFDDVRGANLLRYWMRRLGLPGASAARLADMMRQLRDA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLP----TLILYPEETTVWDGRYQFQNLSDS 350
                  V      +    + ++        P    T   + + +  WDG+ +  +L   
Sbjct: 304 HDAHALRVDHAGQCLRLYRDTVYWEAGDSAAPRDDGTGTPHADASLAWDGQ-EIWHLPGW 362

Query: 351 LIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389
                  +   A     +P  + + A     ++ GG+ +
Sbjct: 363 RGTF-VFARADAGSDDALPETLLRSAPLIARARAGGERM 400


>gi|223983243|ref|ZP_03633437.1| hypothetical protein HOLDEFILI_00717 [Holdemania filiformis DSM
           12042]
 gi|223964848|gb|EEF69166.1| hypothetical protein HOLDEFILI_00717 [Holdemania filiformis DSM
           12042]
          Length = 407

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 52/282 (18%), Positives = 102/282 (36%), Gaps = 16/282 (5%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           + +     +V VSGG DSM LL             ++      V++  R TA  + + V 
Sbjct: 4   NQLAEKKWIVGVSGGPDSMALLDLCRR-------HRVSVVCAHVNYHHRPTADRDQQIVE 56

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C    I    +     +      A AREARYA  +  A    A  ++ A   DD LET
Sbjct: 57  AYCRNYAIPFYSLD-PVKETSGNFQAWAREARYAFFARLAVQEAAAGVLIAQHLDDFLET 115

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             ++ +     + +G+      +   +        L   +  ++ +  +  I++  D SN
Sbjct: 116 ALLQQESGRQCEVLGIREEGRVLGVVVVRP----LLSWTKRQLQEYCNRHKIAYGIDESN 171

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
             D + R ++R    ++   +   K  + + L+ + ++           ++    I   +
Sbjct: 172 LSDDYRRNQLRHH--ELAELSEAEKRSEVRKLKARNHDRQKKKEAVEAKLNPADPIISQE 229

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
             L +        LR  A +    +  P    +  ++  LK 
Sbjct: 230 IFLTLSEAEQRIFLR--AWMQEQGVVPPSEAFLIELIKALKQ 269


>gi|157165572|ref|YP_001467030.1| ATP/GTP hydrolase [Campylobacter concisus 13826]
 gi|112800063|gb|EAT97407.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           concisus 13826]
          Length = 330

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 12/200 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S G DS  L   L           +KF  + VDH +RE +K EV    ++ S+   
Sbjct: 16  LLAFSHGIDSTALFYILKE-------TGVKFDLVIVDHNVREQSKFEVESAKELASKFGK 68

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V S   +   +     AREARY   SE  +      ++ AH FDD+ E   M+  + 
Sbjct: 69  KIYVKSVNLA--GSNFEKNAREARYEFFSEICQKFGYENLILAHQFDDKFEWFLMQLGKG 126

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              K   L GM + +    + W+ RP L  R+++++++L +R + +  D +N + + +R 
Sbjct: 127 AGLKE--LFGMSE-LEKREHFWLVRPLLNLRKKELQNYLDERGLRYFVDETNLEGKLKRS 183

Query: 203 RVRRFVRDIDLHALYLKMKK 222
            VR    +  L   +  +KK
Sbjct: 184 FVRLNFSEPFLDEYFSGVKK 203


>gi|254444811|ref|ZP_05058287.1| hypothetical protein VDG1235_3054 [Verrucomicrobiae bacterium
           DG1235]
 gi|198259119|gb|EDY83427.1| hypothetical protein VDG1235_3054 [Verrucomicrobiae bacterium
           DG1235]
          Length = 478

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 73/312 (23%), Positives = 117/312 (37%), Gaps = 13/312 (4%)

Query: 22  ILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSR 79
           + VA SGG+DS+  L++    + +    G      +  +H LR  A D +  +  ++C  
Sbjct: 33  LYVACSGGADSVFALMLVFLYLKNSDRLG--SLRVLHFNHGLRGDASDGDAEFAKELCDG 90

Query: 80  LRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINAT--LIMTAHTFDDQLETVY 136
           L I                  A  REAR     +      AT   ++T H  DD  ET+ 
Sbjct: 91  LSIPFLDAKADWAVALDKVTEAIGREARLGFFRKATGASAATPAWVVTGHHADDVAETML 150

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R    +G  L+   +       +   RP L   R++I+S L    ISW ED +N  
Sbjct: 151 MRLSRGSGLEG--LTAPREVSKAGGGIHFLRPLLGFTRKEIQSTLEGCGISWREDATNDS 208

Query: 197 DRFERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           DR  R R+R+ V    DL A           R  +      L      V   +       
Sbjct: 209 DRNYRARLRKSVIPSWDLAADRPARLGVSRSRSLLAEDAEALDAWTDRVWESAWDQDLGA 268

Query: 256 ILNID-STLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-GRVVIDRRA 313
           +   + +T+   L R       G + L G +++E  +  L  G R  + I   V ++   
Sbjct: 269 LATTEVATVPVALQRRVLHRLVGGVEL-GAKAIEACLEALAGGTRLKIEISAGVFLEFSE 327

Query: 314 NFLWITRAVRNL 325
           + +   R    +
Sbjct: 328 STIQCVRESSGM 339


>gi|332299446|ref|YP_004441367.1| tRNA(Ile)-lysidine synthase [Porphyromonas asaccharolytica DSM
           20707]
 gi|332176509|gb|AEE12199.1| tRNA(Ile)-lysidine synthase [Porphyromonas asaccharolytica DSM
           20707]
          Length = 479

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 107/303 (35%), Gaps = 23/303 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +++A+SGG+DS         +L        +  A   +  LR E +  +  +V+++C +L
Sbjct: 19  VIIALSGGADSTA-------LLWGLLLLGYRCVAAHCNFHLRGEESDRDEIFVTELCDQL 71

Query: 81  RIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +     S+       +     +  AAR+ RY    +  +  +A  I   H  +D +E +
Sbjct: 72  GVPLERASFDTYGYVAAHKGVSVEMAARKLRYDFFDKLYERYDAQSIALGHHLEDNVEQL 131

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +        +G G+ G+   +         RP +      I  FL      +  D +N 
Sbjct: 132 LINLS-----QGAGVRGLRGMLPIREEGKYIRPLIDTPPRLIYDFLQIAEQPFVTDSTNA 186

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D    R  VR  +R +    L     +     + +   +  L   Y+   + +  +   +
Sbjct: 187 DTSIRRNFVRHTLRPL-FDELNPSFDQAVASTIHILRDLEQLQDHYIRSTLPADASQPLE 245

Query: 256 I--LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           +  L      L  L    AAI   ++ L   + +       +            +I+R  
Sbjct: 246 VAWLRQQIAPLALLYSYFAAIDCDRLVL--QQLLMDCTKSERDNSYARYEGRGGIIERYR 303

Query: 314 NFL 316
            +L
Sbjct: 304 GYL 306


>gi|291457314|ref|ZP_06596704.1| tRNA(Ile)-lysidine synthase [Bifidobacterium breve DSM 20213]
 gi|291381149|gb|EFE88667.1| tRNA(Ile)-lysidine synthase [Bifidobacterium breve DSM 20213]
          Length = 383

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 16/244 (6%)

Query: 7   ESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E  R         A  +LVA SGG DSM L      V +      ++  A+ VDH L+  
Sbjct: 29  EFARHGEHQAAPDAPLVLVACSGGRDSMALAAVCRIVCASLG---LRCGAVIVDHGLQSG 85

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           +       ++ C    +A   V   +   Q  G+ AAAREARY  +   A+ +NA +++ 
Sbjct: 86  SDRVATLTAERCRDCGLAPVAVRTASVHVQGEGVEAAAREARYGELCGAARELNAAVVLL 145

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AHT DDQ ETV +   R        L+GM   +  D  +   RP +   R +        
Sbjct: 146 AHTLDDQAETVLIGLLRSGGVD--ALAGMPQVMHRD-GIMFLRPLIGVSRAETTGICEDL 202

Query: 185 NISWCEDPSNTDD-------RF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           NI + +DP+N DD        +  R R+R  +           + +      ++      
Sbjct: 203 NIHYWDDPTNGDDVDGELPRDYPLRSRIRHDLLPAIKRFAGADVTQHIANGARLARLDKE 262

Query: 237 LIPK 240
            + +
Sbjct: 263 YLDQ 266


>gi|149194101|ref|ZP_01871199.1| hypothetical protein CMTB2_03413 [Caminibacter mediatlanticus TB-2]
 gi|149136054|gb|EDM24532.1| hypothetical protein CMTB2_03413 [Caminibacter mediatlanticus TB-2]
          Length = 323

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 109/297 (36%), Gaps = 28/297 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  L   L           I F    V++  RET+ +EV Y   +  +   
Sbjct: 4   LLAFSGGIDSSALFFWLME-------KNIDFDIAIVNYHTRETSDEEVEYAKYLAKKYNK 56

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +      K        AR+ RY    E  K    + ++  H  +D+ E   M+  + 
Sbjct: 57  KIFIKDCYLKKFS---EKKARDCRYTFFEEIIKKYGYSTLILGHQLNDRFEWFLMQLSKG 113

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              K +      +   +     I RPF    R +I  +L + NI +  D SN D +++R 
Sbjct: 114 AGLKELIAMEKWEEREF---YKIYRPFYNLSRREIIEYLHKHNIKYFIDKSNFDIKYKRN 170

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
            +R+   +           KF ++  K        + +   + +       +D+     T
Sbjct: 171 LIRKEFSN-----------KFIEMFEKGVKKSFEFLEEDKKLLINLNWKKIKDLYIFKKT 219

Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319
                ++    I      LP  +  + +   LK+    CV  G++ ID     ++++
Sbjct: 220 NPKLDIKKVDLILKRLGVLPTKKQKDEI---LKTNFS-CVIQGKIAIDSNNEKIYVS 272


>gi|114327773|ref|YP_744930.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315947|gb|ABI62007.1| tRNA(Ile)-lysidine synthetase TilS [Granulibacter bethesdensis
           CGDNIH1]
          Length = 433

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 133/377 (35%), Gaps = 23/377 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VAVSGGSDS+ L +        R        A+ VDH LR  +  E +   +     
Sbjct: 40  RVAVAVSGGSDSLALALLAARWQRSRGG---SVLALVVDHGLRPESAFEAQLTLERLKTQ 96

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +I   ++     +  + + + AR ARY  +    +      ++  H   DQ ET+++R Q
Sbjct: 97  KIEARLLRLTTLQRGSAIASRARAARYDALIGACRNEGIIDLLLGHHRQDQAETIWIRQQ 156

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
              A  G+    +        ++ + RP L   +  +R+ +    + W EDPSN      
Sbjct: 157 AGSAVMGLAGMALLRE---AADIRLLRPLLAFNKASLRNVVRDYGLDWVEDPSNHSPAAG 213

Query: 201 RVRVRRFVR--DIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           R + R  V         L          R      +A  +   ++        +S + L+
Sbjct: 214 RTQAREVVERDGPQQDQLLEMAHHAAMTRRVQEQTIAQELAATVSFLPEGYALVSGNTLS 273

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
             S      L    A   G+   P +  +     F    +   +   RV+   R    W+
Sbjct: 274 CPS------LAAVLAAVSGRNYRPRHARLTP---FQHGLRPMTLEGIRVLPAGRLPGDWL 324

Query: 319 TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL----IQIGPQSYRKADVPSGIPPIIAQ 374
                      +  ++  +WD R++  + S       + +G          S     +  
Sbjct: 325 IVREHAAQQAPIVAKDRGLWDQRFRIHDPSGDAEAKGLSLGALGKDAKLFRS--RDGLPS 382

Query: 375 RALSSMPSKEGGKPLLA 391
             L ++PS   G+ L+A
Sbjct: 383 AILQTLPSWRHGEKLIA 399


>gi|315635636|ref|ZP_07890899.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Arcobacter butzleri JV22]
 gi|315479933|gb|EFU70603.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Arcobacter butzleri JV22]
          Length = 326

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 127/314 (40%), Gaps = 30/314 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S +  +  L+A S G DS  L   L           I F    V++ +R  +KDEV Y  
Sbjct: 6   SAIKESKNLLAFSAGVDSSALFFLLLK-------QNIPFDIAIVNYNVRVQSKDEVNYAK 58

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  +      +   K     +     AR+ RY    E     +   ++TAH  +D+LE 
Sbjct: 59  KLALKYNKQIYIKDIKLES-TSNFEKTARDIRYKFFEEIIDENSYETLITAHQLNDKLEW 117

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
             M+       KG GL  +     ++   N  + +P L+  +E++  FL Q NI +  D 
Sbjct: 118 FLMQL-----TKGAGLVELIGFNEFEQKENYKVYKPLLKITKEELEKFLKQENIKYFIDN 172

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           SN D++++R   R    D  L      +KK  +      N++ + I   + V     I  
Sbjct: 173 SNFDEKYKRNYFRHNFSDKLLSEYTNGIKKSFEYLQNDINSLNIEIKP-IKVFDELEIYK 231

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDR 311
           +Q+  N++  ++   L+        +  L      E ++      K+  ++I   + I  
Sbjct: 232 NQNDNNLNIRIIDNSLKK-------RGFLLSSAQREEIL------KQKEITISHKINISI 278

Query: 312 RANFLWITRAVRNL 325
           + +F+WI   + ++
Sbjct: 279 KKDFIWICPNISSI 292


>gi|84495023|ref|ZP_00994142.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649]
 gi|84384516|gb|EAQ00396.1| helix-turn-helix, Fis-type protein [Janibacter sp. HTCC2649]
          Length = 320

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 109/273 (39%), Gaps = 15/273 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  +   A +LVA SGG DSM L  A   V  +         A+ VDH L+  + 
Sbjct: 14  AVRSSLADIAPDAVVLVACSGGGDSMALAEA---VAHEARRASWSAGAVVVDHGLQAGSA 70

Query: 68  DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           D     +     L +    V         +GL +AAR+ARYA +S  A  + A +++  H
Sbjct: 71  DVAARAAGRLRDLGLGPVVVERVAVVDNGSGLESAARDARYAALSGVADRLGAAVVVVGH 130

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T +DQ E V +   R    +   L+GM             RP L   R + R  L    +
Sbjct: 131 TLEDQAEQVLLGLVRGSGAR--SLAGMASVR-----GIYRRPLLGVTRAECRESLKAEGV 183

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
            W +DP N D  F RVR RR V D++      +   + +  D   +  + +  L    + 
Sbjct: 184 EWWDDPMNDDAAFTRVRARRAVADLEADLGPGIVAALGRSADQLREDADFLDSLADDAVA 243

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
                   ++Q +  +   +   + R      G
Sbjct: 244 ALGPGPWEVTQ-LAALPRAVRSRVWRRLLIAAG 275


>gi|68535341|ref|YP_250046.1| cell cycle protein MesJ [Corynebacterium jeikeium K411]
 gi|68262940|emb|CAI36428.1| cell cycle protein MesJ [Corynebacterium jeikeium K411]
          Length = 350

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 120/327 (36%), Gaps = 33/327 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
             R+    A +   +SGG+DS+ L+  L           +K  A+ VDH L+E +    R
Sbjct: 32  AARAAQVRAGVAAGLSGGADSLALVHGLLRC-------GVKVHAVVVDHQLQEGSAQVAR 84

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +D    L     + +     P  G    AR+ARY  +   A       ++ AHT DD 
Sbjct: 85  QAADTALSLGATAEIRTVDVEGPGEGP---ARQARYEALGAAAA---GRPLLVAHTADDD 138

Query: 132 LETVYMRSQRDYAEK---GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            E + +   R    +   GM         +     W+ RP L C R +  +      ++W
Sbjct: 139 AEGMLIGLVRGSGAEAIAGMRSVHTDHAAVAAGAAWLGRPLLNCTRAETEAECRAAGLNW 198

Query: 189 CEDPSNTDDRFERVRVRRFV----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            EDP N+ D + R R+R  V     D+    +   M +   +  +    +  L  + L  
Sbjct: 199 WEDPHNSSDAYLRSRIRTHVLPYLEDVLGEHIGANMARTARMLREDVELLDELAGRELQA 258

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                     ++    + L   +L+   A   G ++     +++ +++  K      V  
Sbjct: 259 AEEGASLNCTELQQQPAALRRRVLKQWLADKAGPLTSAHLNAIDALVIAWKGQGGAAVPW 318

Query: 305 -------------GRVVIDRRANFLWI 318
                         R+V+ RR  +L +
Sbjct: 319 PQSPPALNEQRRTHRLVVQRRDGYLQL 345


>gi|255320834|ref|ZP_05362008.1| tRNA(Ile)-lysidine synthase [Acinetobacter radioresistens SK82]
 gi|255302003|gb|EET81246.1| tRNA(Ile)-lysidine synthase [Acinetobacter radioresistens SK82]
          Length = 405

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/273 (23%), Positives = 112/273 (41%), Gaps = 17/273 (6%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           +  AI VDH L+  ++D   +V   C +L +   V     +     L   AREARY    
Sbjct: 8   RIRAIYVDHQLQAQSRDWGIHVQAECMKLDVPCIVQPVHVNA--GNLERQAREARYQAYH 65

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +H K+    +++ AH   DQ ETV +R        G+      D       + I RP L 
Sbjct: 66  QHIKS--GEVLVLAHHQQDQAETVLLRLFSGTGISGLSAMKQLDQR---HEMPIWRPMLS 120

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             RE I  +  Q NIS+ +DPSN +  ++R   R  +  + L + + KM++       + 
Sbjct: 121 LSREQICQWAEQLNISFIDDPSNNNTHYDRAWCRTMLWPL-LASRFSKMQQAVTRTASLM 179

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILN----IDSTLLFYLLRVSAAICGGQISLPGYRSM 287
                ++ + L   +++     Q  L     +       LL  SA + G  I  P +  +
Sbjct: 180 QDADEILQEVLQEDLKNCGNAQQLDLARLKLLSKPRQRQLL--SAWMKGEGIYRPAFEMV 237

Query: 288 ERV---MLFLKSGKRGCVSIGRVVIDRRANFLW 317
           ER+   ++  K+  +  +   +    R    L+
Sbjct: 238 ERIQHEVIAAKADAQAALHWNKYYYVRYHGQLY 270


>gi|322689831|ref|YP_004209565.1| hypothetical protein BLIF_1650 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320461167|dbj|BAJ71787.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 388

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 100/243 (41%), Gaps = 16/243 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +      ++   + VDH L+E ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCTSMG---VRCGVVIVDHGLQEGSEQVAGEAADRCRALG 102

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   +V          GL AAAR+ARY  +   A+   A  ++ AHT DDQ ETV +   
Sbjct: 103 LGPVIVRNATVQARGEGLEAAARQARYNELCAAARESGAIAVLLAHTMDDQAETVLIGLL 162

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R        L+GM            +RP L   R++         + + +DP+N D    
Sbjct: 163 RSRGVD--ALAGMPQVFT-RSGATFARPLLTLTRDETTGLCEDLGVEYWDDPTNGDAVDG 219

Query: 197 ---DRF-ERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
              D +  R RVR  +   I+  A +   + F +           L  +   V   ++ A
Sbjct: 220 ELPDDYPLRSRVRHDLLPAIERFAGFNVTRHFAESAQLARMDKEYLDQRSDEVMGEAVTA 279

Query: 252 ISQ 254
           + +
Sbjct: 280 VDR 282


>gi|78183658|ref|YP_376092.1| MesJ-like protein [Synechococcus sp. CC9902]
 gi|78167952|gb|ABB25049.1| possible MesJ-like [Synechococcus sp. CC9902]
          Length = 337

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 13/290 (4%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ++VAVSGG DSM LL  L  ++    +   +      DH     +      ++ 
Sbjct: 29  LPQGKTLVVAVSGGQDSMALLGLLRDLMPVHQW---RLVLWHGDHHWHPHSSQIASELNQ 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C    +   + +     PQT   A AR  RY  +++   T  A  + T HT  D+ ET+
Sbjct: 86  WCDGQTLPLQIDTAPEDVPQT--EADARSWRYRCLTQLTHTHRADAV-TGHTASDRAETL 142

Query: 136 YMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            M+  R     G+G       +         + RP L  RR++         +    DP 
Sbjct: 143 LMQMSRGSDLAGLGSLRAVRPLQAHAPEGPQLRRPLLGFRRKETAQICSDLQLPIWNDPG 202

Query: 194 NTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N    F R R+R  V  +          ++  F +   ++ +    L    LT       
Sbjct: 203 NQSPDFARNRIRHEVMPVLEELNPGCSRRLADFAERMSQLRDTQHNLAALALTTLQNKAG 262

Query: 251 AISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSM-ERVMLFLKSGK 298
              + +  +       LL       G   +  P    +  R+     +G+
Sbjct: 263 LDRKALGRLPQPTRRQLLAQWLNQQGVPGLDAPTLEQLGHRLRQAAPAGE 312


>gi|198273466|ref|ZP_03206002.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|198249986|gb|EDY74766.1| tRNA(Ile)-lysidine synthetase [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 326

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 83/206 (40%), Gaps = 18/206 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L AVSGG DSM +L         R+          V++  RE+A  +   V D 
Sbjct: 12  ITNKKYLAAVSGGPDSMAMLNM-----YKRNIS----VVCHVNYHKRESADRDQEIVVDF 62

Query: 77  CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           C +  +   ++       +         A AR  RY    E  K  N   +  AH FDD 
Sbjct: 63  CKKNNLPIEILDVDEKVYEKYAHIDNFQAKARLIRYDFFKEIGKKYNIQHLYIAHNFDDF 122

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET YM+  R       G+            + + RP L   ++ ++ +  +  I +  D
Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVVNGMIVKRPVLFICKQTLQRYCDENKIKYGID 178

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY 217
            +N  D +ER RVR+ + +  L+ +Y
Sbjct: 179 ETNELDIYERNRVRKTISNWSLNEVY 204


>gi|302690392|ref|XP_003034875.1| hypothetical protein SCHCODRAFT_29811 [Schizophyllum commune H4-8]
 gi|300108571|gb|EFI99972.1| hypothetical protein SCHCODRAFT_29811 [Schizophyllum commune H4-8]
          Length = 392

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 25/221 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++VA SGG DS  LL  LH         +  +  + SVDH L+ ++   + + +   +RL
Sbjct: 17  LVVANSGGPDSTCLLFLLHRWARSLPESQSHRILSWSVDHNLQPSSAQWMSHTARFAARL 76

Query: 81  RIAH--SVVSW--------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            I H  + ++W          S  +  L  AARE RYAL+ +  ++  A +    H  DD
Sbjct: 77  NIRHLSAQIAWGDGGFPPKPTSGGKGKLELAAREVRYALLYDALRSAGAEVAAFGHHADD 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-----------WISRPFLRCRREDIRS 179
           Q+ET  +R+ +  +E  +GL+GM     + +             WI RP L   ++ I +
Sbjct: 137 QVETAILRALKGSSE--LGLAGMKSCRRFGMGARGELGHEGLRKWIVRPLLPVSKDRILA 194

Query: 180 FLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLK 219
              +  + +  D +N       R  +R  V + D+  ++++
Sbjct: 195 TCDEHKLEYVVDSTNFQPELTLRNAIRNAVEERDVGPVFIQ 235


>gi|162146631|ref|YP_001601090.1| tRNA(Ile)-lysidine synthase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785206|emb|CAP54752.1| putative tRNA(Ile)-lysidine synthase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 430

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 91/379 (24%), Positives = 149/379 (39%), Gaps = 26/379 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VAVSGG+DS+ L                    + VDH LR  A  E          L
Sbjct: 39  PVGVAVSGGADSLCLAYLAARWRRAVRA-------LIVDHGLRPAAAAEAALTRRRLHAL 91

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   ++     +P  GL   AR ARYA ++   +      ++  H   DQ ET+ +R  
Sbjct: 92  GIPADILVLDGLRPGPGLADRARRARYAALARACRRAGIVDLLLGHHAGDQAETIAIR-- 149

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R  A    GL+GM  ++ +  +L + RP L   R+ +R+ L +  ++W EDPSN D R E
Sbjct: 150 RRAASGPDGLAGMA-SVSFTADLRLVRPLLGVDRDRLRATLRRAGLAWVEDPSNADPRAE 208

Query: 201 RVRVRRFV--RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           R RVR  +         L     +    R+  +   A L+ + +T+     +A++ D   
Sbjct: 209 RARVRAALDDDPAARGPLRAAASRAGAARMDRDARQAALLARNVTMAEGGWVALADDPTC 268

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRANFL 316
                    L        G   LP  R++  +    +    G  C+      + R  +  
Sbjct: 269 P------RALAFLMRAVSGSDYLPPSRAVAALCAAPRPATLGGTCLMAAGPALKRAGHRW 322

Query: 317 WITRAVRNL-PTLILYPEETTVWDGRYQFQNLSD---SLIQIGPQSYRKADVPSGIPPII 372
            + R    + P ++  P+   VWDGR+     +      + +G      A  P G     
Sbjct: 323 LLLREEAAMQPPVVARPD--CVWDGRFVLSAPAGTNLDGVTLGAAGPSGAWAPPGWRTQW 380

Query: 373 AQRALSSMPSKEGGKPLLA 391
             RAL ++P+      ++A
Sbjct: 381 PARALRTLPALHRAGRVVA 399


>gi|257783916|ref|YP_003179133.1| tRNA(Ile)-lysidine synthetase [Atopobium parvulum DSM 20469]
 gi|257472423|gb|ACV50542.1| tRNA(Ile)-lysidine synthetase [Atopobium parvulum DSM 20469]
          Length = 489

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/271 (23%), Positives = 102/271 (37%), Gaps = 31/271 (11%)

Query: 33  MGLLIALHSVLSDRSFG-------KIKFSAISVDHCLRET-AKDEVRYVSDVCSRLRIAH 84
           M LL    +   D   G       K +   + V+H LRE  A  +  +V + C  L I  
Sbjct: 1   MALLHMAATESLDLGDGLGLAHVAKERLHVLHVNHLLREDDADADQHFVQETCDSLDIPC 60

Query: 85  SVVSWKNSK----PQTGLMAAAREARYALISEHAKTINAT--------LIMTAHTFDDQL 132
           +V+    +K        +    R  RY    E A+ + A          I+TAHT DD+ 
Sbjct: 61  TVLRADVAKLARERDGNVEEIGRRVRYDAARELAQKLCAEQGVSRQKAKILTAHTADDRT 120

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  M   R     G+       T +      I RP L    E ++ +L  RN+ W ED 
Sbjct: 121 ETFMMNVMRGSGMSGL-------TSIPRHRGLIYRPLLNYTHEQLKDWLKARNLDWHEDA 173

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +NTD  + RV +R  V  +      L ++    +   + +    L  K      +  +  
Sbjct: 174 TNTDTHYLRVYMRHNVLPLLKARNPLLVQTVCKIADLMTDEDDYLEAKAARKLRQITLRK 233

Query: 253 SQDILNIDSTLLFY----LLRVSAAICGGQI 279
            + +L +D+  L      + R    I   Q+
Sbjct: 234 GESLLVLDALKLSSTDVVIARRVVRIVARQL 264


>gi|209543377|ref|YP_002275606.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531054|gb|ACI50991.1| tRNA(Ile)-lysidine synthetase [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 438

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 91/379 (24%), Positives = 149/379 (39%), Gaps = 26/379 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VAVSGG+DS+ L                    + VDH LR  A  E          L
Sbjct: 47  PVGVAVSGGADSLCLAYLAARWRRAVRA-------LIVDHGLRPAAAAEAALTRRRLHAL 99

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I   ++     +P  GL   AR ARYA ++   +      ++  H   DQ ET+ +R  
Sbjct: 100 GIPADILVLDGLRPGPGLADRARRARYAALARACRRAGIVDLLLGHHAGDQAETIAIR-- 157

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R  A    GL+GM  ++ +  +L + RP L   R+ +R+ L +  ++W EDPSN D R E
Sbjct: 158 RRAASGPDGLAGMA-SVSFTADLRLVRPLLGVDRDRLRATLRRAGLAWVEDPSNADPRAE 216

Query: 201 RVRVRRFV--RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           R RVR  +         L     +    R+  +   A L+ + +T+     +A++ D   
Sbjct: 217 RARVRAALDDDPAARGPLRAAASRAGAARMDRDARQAALLARNVTMAEGGWVALADDPTC 276

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG--CVSIGRVVIDRRANFL 316
                    L        G   LP  R++  +    +    G  C+      + R  +  
Sbjct: 277 P------RALAFLMRAVSGSDYLPPSRAVAALCAAPRPATLGGTCLMAAGPALKRAGHRW 330

Query: 317 WITRAVRNL-PTLILYPEETTVWDGRYQFQNLSD---SLIQIGPQSYRKADVPSGIPPII 372
            + R    + P ++  P+   VWDGR+     +      + +G      A  P G     
Sbjct: 331 LLLREEAAMQPPVVARPD--CVWDGRFVLSAPAGTNLDGVTLGAAGPSGAWAPPGWRTQW 388

Query: 373 AQRALSSMPSKEGGKPLLA 391
             RAL ++P+      ++A
Sbjct: 389 PARALRTLPALHRAGRVVA 407


>gi|224541459|ref|ZP_03681998.1| hypothetical protein CATMIT_00628 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525617|gb|EEF94722.1| hypothetical protein CATMIT_00628 [Catenibacterium mitsuokai DSM
           15897]
          Length = 382

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 100/244 (40%), Gaps = 18/244 (7%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-N 91
           M LL  +H                 V++ LR   +++ + V D C    I      +  +
Sbjct: 1   MALLDMMHEY---------SICVAHVNYNLRNDTEEDYKVVHDYCKAHNIPFYYKEFTPD 51

Query: 92  SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
              +      AR+ RYA   E  KT     +   H  DD +ET+YM  +RD     +G+ 
Sbjct: 52  DYVKGNFQTVARDMRYAFYQEVYKTEQCDALCLGHQKDDVIETIYMHLERDSHPDYLGI- 110

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
                +   L + I RP L   ++D+R +    +I + +D +N    F R R+R  + + 
Sbjct: 111 ---QEVSCRLGMTIIRPLLHVTKQDLRDYCDDHHILFHDDYTNFQTEFTRDRIRNTILNQ 167

Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
             ++   ++ K  +   +        + KYLT  +   + + +D+L   S +L+ LL+  
Sbjct: 168 YTNSQKEELLKKAEEYNQKQVLKKEEVSKYLTEPLDYTL-VPEDLL---SDVLYALLKKH 223

Query: 272 AAIC 275
             + 
Sbjct: 224 IEVS 227


>gi|319779353|ref|YP_004130266.1| tRNA(Ile)-lysidine synthetase [Taylorella equigenitalis MCE9]
 gi|317109377|gb|ADU92123.1| tRNA(Ile)-lysidine synthetase [Taylorella equigenitalis MCE9]
          Length = 366

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 111/292 (38%), Gaps = 22/292 (7%)

Query: 2   FLSPIESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           F S I+SV   ++ L       I +A SGG DS+ L       ++ R    I+   I V 
Sbjct: 34  FDSNIDSV---IKDLSSKGIRKIGIAFSGGKDSVVLA-IQSKYIATR--YGIEVHLIHVH 87

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTIN 118
           H L   A + V+       R      ++          G+ AAAR+ARY  I++  K + 
Sbjct: 88  HGLYAEADEWVQRNLKFAERFGFLIHILYVNVPTDTNKGVEAAARQARYKAITDKCKELG 147

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              + T H  DDQ ET+ +R  R      +G+ G+         +   RP+L        
Sbjct: 148 IGHVFTGHHIDDQSETILIRLLRGTGI--LGIKGIPPKSEI-YGIKFHRPWLNSTP--TY 202

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           + L        +DPSN D ++ R  VR  + D  + + +   +K      +V   V  L 
Sbjct: 203 NILELIGHESIKDPSNFDSKYARGAVRN-MFDASIASHFPLWQKNVARFAQVCVEVDELT 261

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                +   S+        ++   +    L++         SLP  R +  +
Sbjct: 262 RDLAILDAESVGLTFNQKDDMGKEVASLDLQLF-------RSLPTRRQINLI 306


>gi|326472395|gb|EGD96404.1| hypothetical protein TESG_03852 [Trichophyton tonsurans CBS 112818]
          Length = 774

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 105/322 (32%), Gaps = 59/322 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I +AVSGGSDSM L      +++      ++  A  VDH  R  +  E + V+     L
Sbjct: 41  RIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYIVDHKYRPESSQEAQSVAKRVKNL 100

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V++ +  +     + G    AR  RY ++ +         ++  H  DD +ET  
Sbjct: 101 GVQSKVLALQWPEGGILTKKGFETQARTLRYQILGQACVKDGIRALLLGHHQDDNVETAL 160

Query: 137 MRSQRDYAEKGM-------------GLSGMC----------------------------- 154
           MR  + + + G+             GL G+                              
Sbjct: 161 MRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQDILKSTNMDGTILHLCSEIP 220

Query: 155 ---------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204
                       +    +++ RPF    +  + +   +  I +  D +N D  F  R  V
Sbjct: 221 SCSISFAPEKMQVSTGGIYLFRPFRSFSKSRLVATCRENKIPFVSDSTNDDLTFTIRNTV 280

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNIDS 261
           R+ +   D     L+      L  K             ++  +  +         + I  
Sbjct: 281 RQLLNSEDSLPRALQRPSILSLVDKSREQTKKFRELCESILKKVEVLSLDTRFGTMVIKM 340

Query: 262 TLLFYLLRVSAAICGGQISLPG 283
            ++  L +  +      ISLP 
Sbjct: 341 PMMSELPKHQSNAVQAHISLPD 362


>gi|313680072|ref|YP_004057811.1| tRNA(ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
 gi|313152787|gb|ADR36638.1| tRNA(Ile)-lysidine synthetase [Oceanithermus profundus DSM 14977]
          Length = 522

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 129/339 (38%), Gaps = 33/339 (9%)

Query: 10  RFFVRSLVY---PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           R F R L        ++ AVSGG DS        ++    +    +     +DH LR  +
Sbjct: 6   RRFERRLAALCGEGRVVAAVSGGGDS-------VALAVLLAAVGREAVVAHLDHALRPGS 58

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLI 122
           + + R+V ++  RL           +    + +  L A ARE RYA ++E A+   A  +
Sbjct: 59  EADARFVCELAGRLGFPCEQRRVDAAAVARRKRENLEAVARELRYAFLAEVARAYGAACV 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAHT +D  ETV ++  R                +      ++RP L   R ++R++L 
Sbjct: 119 LTAHTLEDNAETVLLQLFRGAG---------RALGIRAKRGRVARPLLEISRTELRAYLR 169

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +R   W EDPSN     +R  +R  V              + ++ + +   + A+  L  
Sbjct: 170 ERGERWLEDPSNELVCLDRNYLRHEVWPRVAARFERAGEALLRYAESQQADDAALDPLAQ 229

Query: 240 KYLTVHMR--SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
             +    R   + A+    L+     L    R    +   Q   P  R +E   L  ++ 
Sbjct: 230 ARIVPDRRFEPVFALRAAPLSRAPEALRR--RALRVVLERQGLRPERRYLE---LAERAL 284

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
               VS+G  V+   A  +       +L  +   P   T
Sbjct: 285 AGESVSLGPFVLRPSAGGVVWVPTQPDLLAVASPPAGLT 323


>gi|226355797|ref|YP_002785537.1| tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115]
 gi|259533711|sp|C1D1Q9|TILS_DEIDV RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226317787|gb|ACO45783.1| putative tRNA(Ile)-lysidine synthetase [Deinococcus deserti VCD115]
          Length = 533

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 110/280 (39%), Gaps = 31/280 (11%)

Query: 30  SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW 89
           +DS+ LL AL    +             +DH LR  + ++ ++V D+  +L  AH+    
Sbjct: 24  ADSVALLRALVQAEARP-------VVAHLDHALRPNSAEDAQWVHDLAEQLGAAHTSTRV 76

Query: 90  K----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145
                 ++    +  AAR  RY ++S  A+   A  +MTAHT  DQ ETV M   R  A 
Sbjct: 77  DVAAVAARRGWNVEDAARRVRYEVLSRAARQHGAHTVMTAHTRRDQAETVLMGLLRGEAV 136

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
                     T +  +   + RP+L   R +I ++L      W EDP+N D  + R  +R
Sbjct: 137 L---------TGIPAVRGRVRRPWLDVPRSEIEAYLKALGQEWREDPTNADVTYTRAWLR 187

Query: 206 RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLL 264
             V       + +   +F  +   +     +       +  + + +        +   +L
Sbjct: 188 TEV-------MPVLAARFPGVEAALGRVAKLAQQDDEALRDLAAALTPHAPRDRVPLAVL 240

Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
              +       G Q  +     ++++    ++G+   V++
Sbjct: 241 RRRVTQELKSAGLQFHV---GQVDQLAEAQRTGETRHVTL 277


>gi|222823298|ref|YP_002574871.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           lari RM2100]
 gi|222538519|gb|ACM63620.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           lari RM2100]
          Length = 318

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 95/248 (38%), Gaps = 18/248 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           SL+     L+A S GSDS  L   L +         I F    +++  R+ +  E +   
Sbjct: 5   SLLKNKKNLLAFSHGSDSSALFFMLLN-------KNIDFDLALINYKTRKNSDKEEQSAK 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++  +      V     +K +    A AR  RY    E  K      ++ AH  +D+ E 
Sbjct: 58  ELAKKYNKKIFVK--IATKIEKNFEANARAVRYEFFDEICKKYKYENLILAHNLNDKFEW 115

Query: 135 VYMRSQRDYA-EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
             M+  +     + +G       +    N  I RP +   +++I +FL + NI +  D S
Sbjct: 116 FLMQFSKGAGFVELLGF----KAVEKKENFIIVRPLINTSKDEILNFLKKENIKYFYDES 171

Query: 194 NTDDRFERVRVRRFVRDIDL----HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           N D+++ R  +R+   +  L      +    +  Q      ++ +      Y  +   S+
Sbjct: 172 NDDEKYFRNFIRKNFANEFLKLYPDGVKKSFEYLQKDLTFFDDEIKEFGGIYCVLKNESL 231

Query: 250 IAISQDIL 257
           I+     L
Sbjct: 232 ISKCFKKL 239


>gi|311743365|ref|ZP_07717172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Aeromicrobium marinum DSM 15272]
 gi|311313433|gb|EFQ83343.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Aeromicrobium marinum DSM 15272]
          Length = 324

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 122/302 (40%), Gaps = 15/302 (4%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +  +   + +++ VSGG+DS+ L      V    ++     SA+ VDH L+  + +    
Sbjct: 20  LHDVGPGSSVVLGVSGGADSLALAAVTAFVARREAW---DVSAVVVDHDLQPGSSEVAAR 76

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            ++ C  L +   VV  +      G  AAAR AR+  +   A    A +I  AHT DDQ 
Sbjct: 77  AAEQCRGLGLRAEVVGVEVGSAG-GPEAAARTARHGALRSAALAAGAEVICLAHTLDDQA 135

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV +   R    +   LSGM       ++  + RP L  RR D         + W +DP
Sbjct: 136 ETVLLGLGRGSGAR--SLSGMAG-----VDGLVRRPLLGLRRRDTEQICAAHGLPWWDDP 188

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            N D    RVRVR     +  + L     +       ++ +   +L        +     
Sbjct: 189 HNRDPAHRRVRVRHEALPVLENVLGGGVAEGLARTARQLADDADLLDRLTDEWVVGHPAP 248

Query: 252 ISQDILNIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
              D+  + S L   +L  +A   G   G+++     +++R++   + G R  +  G   
Sbjct: 249 TVADLAGLPSALRSRVLLRAARSAGCPPGELAAVHVDALDRLVRLGRGGARVNLPGGVTC 308

Query: 309 ID 310
           + 
Sbjct: 309 VR 310


>gi|226324144|ref|ZP_03799662.1| hypothetical protein COPCOM_01922 [Coprococcus comes ATCC 27758]
 gi|225207693|gb|EEG90047.1| hypothetical protein COPCOM_01922 [Coprococcus comes ATCC 27758]
          Length = 429

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 122/345 (35%), Gaps = 31/345 (8%)

Query: 59  DHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEH 113
           +H +R E AK +  +V  +C +  I    VS        + +     A R AR  +  + 
Sbjct: 2   NHGIRGEEAKADEEFVKTLCEKKEIPCRSVSVDIPKMAVEYRMSEEEAGRTARREIFEQA 61

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+    T I  AH  DD  ET ++   R    +           +Y +N    RP L   
Sbjct: 62  AEEWGGTRIALAHHQDDNAETFFLHLARGSGLR-------GLGGIYPVNGMYIRPLLCVG 114

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK--------MKKFQD 225
           R++I  +L  R + +C D +N +D + R R+R  V       +  K        M + ++
Sbjct: 115 RKEIEDYLKGREMPYCIDATNMEDAYMRNRIRNHVIPYFKENINEKTVEHMNRSMDQLRE 174

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
           +   +              +   I   ++     +  +   +LR + A+           
Sbjct: 175 IWDYMERQTESAYQICTAQNGEKICIHAEAYHRQERLIRKMILRKALALVAEHEKDLEQV 234

Query: 286 SMERV--MLFLKSGKR--------GCVSIGRVVIDRRANFLWITRAVRNLP-TLILYPEE 334
            +E++  +   + GKR         C +   + + R+     +    +NL    +     
Sbjct: 235 HVEKLEGLFEKQVGKRLDLPYAVCACRTYEGIELKRKKKDTELAEEEKNLDLKQVSGKIS 294

Query: 335 TTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSS 379
              W+  Y+     +   QI  ++Y K      I   +A R   +
Sbjct: 295 YGKWEISYRIFEKEECRCQIPKKTYTKWFDYGIIKQSVAVRTRRA 339


>gi|322378539|ref|ZP_08052987.1| PP-loop family protein [Helicobacter suis HS1]
 gi|322379747|ref|ZP_08054057.1| tRNA(Ile)-lysidine synthase [Helicobacter suis HS5]
 gi|321147818|gb|EFX42408.1| tRNA(Ile)-lysidine synthase [Helicobacter suis HS5]
 gi|321149053|gb|EFX43505.1| PP-loop family protein [Helicobacter suis HS1]
          Length = 346

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/208 (22%), Positives = 89/208 (42%), Gaps = 14/208 (6%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++     L+  SGG DS+ L   L           + F    +DH LR  +++E+ Y  
Sbjct: 9   EILLKGRCLLGFSGGGDSVALFFLLKK-------EGVNFDIAILDHGLRAQSQEEIAYAK 61

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  +   +  V   +     + L A  R+ RY+      +  N T ++ AH  +D+LE 
Sbjct: 62  HLAEKY--SKRVHIGQVHLSGSNLEARYRKERYSFFERIIQEFNYTHLILAHHLNDKLEW 119

Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +M+  +  + +  +G S +   + YD    + RP +  ++  +R +L      + ED +
Sbjct: 120 FFMQLAKGSSLQTLLGFSALEKRVGYD----LIRPLIYTQKRTLREYLHTNKYRYFEDET 175

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMK 221
           N   RF+R   R+ V +  L  ++    
Sbjct: 176 NFSPRFKRNIFRQCVSNPFLEGVFPGFN 203


>gi|313885942|ref|ZP_07819680.1| tRNA(Ile)-lysidine synthetase [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924472|gb|EFR35243.1| tRNA(Ile)-lysidine synthetase [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 494

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 106/303 (34%), Gaps = 23/303 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRL 80
           +++A+SGG+DS         +L        +  A   +  LR E +  +  +V+++C +L
Sbjct: 34  VIIALSGGADSTA-------LLWGLLLLGYRCVAAHCNFHLRGEESDRDEIFVTELCEQL 86

Query: 81  RIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            +     S+       +     +  AAR+ RY       +  +A  I   H  +D +E +
Sbjct: 87  GVPLERASFDTYGYVAAHKGVSVEMAARKLRYDFFDTLYERYDAQSIALGHHLEDNVEQL 146

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +        +G G+ G+   +         RP +      I  FL      +  D +N 
Sbjct: 147 LINLS-----QGAGVRGLRGMLPIREEGKYIRPLIDTPPRFIYDFLRIAEQPFVTDSTNA 201

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D    R  VR  +R +    L     +     + +   +  L   Y+   + +  +   +
Sbjct: 202 DTSIRRNFVRHTLRPL-FDELNPSFDQAVASTIHILRDLEQLQDYYIRSTLPADASQPLE 260

Query: 256 I--LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
           +  L      L  L    AAI   ++ L   + +       +            +I+R  
Sbjct: 261 VAWLRQQIAPLALLYSHFAAIDCDRLVL--QQLLMDCTKSERDNSYARYEGRGGIIERYR 318

Query: 314 NFL 316
            +L
Sbjct: 319 GYL 321


>gi|326328803|ref|ZP_08195139.1| tRNA(Ile)-lysidine synthase [Nocardioidaceae bacterium Broad-1]
 gi|325953425|gb|EGD45429.1| tRNA(Ile)-lysidine synthase [Nocardioidaceae bacterium Broad-1]
          Length = 327

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 129/331 (38%), Gaps = 24/331 (7%)

Query: 1   MFLSP-IESVRFFVR----SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           M L P I +VR  VR     L     ++VA SGG+          +  +     K+    
Sbjct: 1   MSLHPSIAAVRRPVRATLEQLEPGDKVIVACSGGA-----DSLALASAAVFEGHKLGLHV 55

Query: 56  I--SVDHCLRETAKDEVRYVSDVCSRLRIAHSVV-SWKNSKPQTGLMAAAREARYALISE 112
           I  +VDH ++E +  +   V    + + I  +V  + +      G  AAAR+ARYA++ +
Sbjct: 56  IGATVDHGMQEGSDAQASKVIAQLAEMGIDETVTATVEVKADGEGPEAAARQARYAVLDQ 115

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+ ++A++I+  HT DDQ ETV +   R    +   LSGM             RP L  
Sbjct: 116 LAERLDASVILLGHTRDDQAETVLLGLTRGSGAR--SLSGMRAAF-----DRYRRPLLGT 168

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVN 231
            R D  +      +   +DP N D  + R R+R  V       L   + +       ++ 
Sbjct: 169 TRIDTETACQIEGLDVWQDPHNRDFAYTRARIRHRVLPTLEEDLGPGVTEALARTAEQLR 228

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                +     ++H      +  + L    + +   +LR++A   G   +      ++ V
Sbjct: 229 EDADFIDDIAESMHRELGGTLPVETLAQYPAAVRTRVLRIAALAAGSPPAELTRDHVKAV 288

Query: 291 MLFLKS--GKRGCVSIGRVVIDRRANFLWIT 319
              +    G+R     G +   R  + +   
Sbjct: 289 DELITGWRGQRWIDLPGHIRARRTNSSIVFE 319


>gi|124112132|ref|YP_001019116.1| hypothetical chloroplast RF62 [Chlorokybus atmophyticus]
 gi|124012239|gb|ABM87973.1| hypothetical chloroplast RF62 [Chlorokybus atmophyticus]
          Length = 345

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/302 (21%), Positives = 111/302 (36%), Gaps = 21/302 (6%)

Query: 1   MFLSPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +F    +++R   R L  P   IL+A SGG DS+ L+  L+ + S  ++   +      D
Sbjct: 25  LFYRINQAIRD--RRLFKPNQRILIAASGGQDSICLIKILNQLKSQWNW---QLGIAHCD 79

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H  +  +     +VS +   L I +                 AR  RY ++ + A + + 
Sbjct: 80  HLWQIDSFYAASHVSQLAENLNIDYYQCITTKV---FNNEEKARLWRYKILEQIASSHDY 136

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I+TAHT  D+ ET      R     G  L  +         + I RP L   R ++  
Sbjct: 137 TAIVTAHTASDRTETFLYNLLRGTGPDG--LQSLSWKRKLKSGIRIIRPLLSTTRFELTV 194

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVN---N 232
              Q  +    D SN D  F+R  +R+     +R      +   + +  +L         
Sbjct: 195 LAKQLQMPLWPDKSNQDLFFKRNLIRKQLLPYLRSFFNPQIDKTIAQLAELLHAETVYME 254

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
            +A LI         +I  +   IL  +   L   +LR              +  +ER+ 
Sbjct: 255 NIAALIRIKAHKKDDTIAELDTSILKTLPLALQRRVLRQFLYHEM--RYRFTFTEIERIR 312

Query: 292 LF 293
           + 
Sbjct: 313 IL 314


>gi|116071731|ref|ZP_01468999.1| possible MesJ-like protein [Synechococcus sp. BL107]
 gi|116065354|gb|EAU71112.1| possible MesJ-like protein [Synechococcus sp. BL107]
          Length = 337

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/292 (20%), Positives = 99/292 (33%), Gaps = 17/292 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ++VAVSGG DSM LL  L  + +              DH     +      +  
Sbjct: 29  LPQGKTLVVAVSGGQDSMALLGLLRDLTA---VHHWTLVLWHGDHHWHPHSSQIASALKQ 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C    +A  V +     PQT   A AR  RY  +++      A  + T HT  D+ ET+
Sbjct: 86  WCDDQGLALQVETAPEELPQT--EADARSWRYRCLTQLTNANGADAV-TGHTASDRAETL 142

Query: 136 YMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +++ R     G+G       +         + RP L   R +         +    DP 
Sbjct: 143 LLQASRGSDLAGLGSLRAVRPLQAHAPEEAQLRRPLLGFSRSETVQICSDLQLPIWNDPG 202

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA---VAMLIPKYLTVHMRSII 250
           N    F R R+R  V  +         ++  DL  +++        L    LT    +  
Sbjct: 203 NQSTDFARNRIRHEVMPVLEELNPGCSRRLADLAERMSQLRDTQQNLAALALTTLQSNEG 262

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS--MERVMLFLKSGKRG 300
              + +  +       LL         Q  +PG  +  +E++   L+     
Sbjct: 263 LDRKALGLLPQPTRRQLLAQWL----NQQGVPGLDAPTLEQLSHRLRQAAPA 310


>gi|326481619|gb|EGE05629.1| PP-loop family protein [Trichophyton equinum CBS 127.97]
          Length = 774

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 104/322 (32%), Gaps = 59/322 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I +AVSGGSDSM L      +++      ++  A  VDH  R  +  E + V+     L
Sbjct: 41  RIGLAVSGGSDSMALAYLCSQLVTQNLMPGLEVKAYIVDHKYRPESSQEAQSVAKRVKNL 100

Query: 81  RIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V++ +  +     + G    AR  RY ++ +         ++  H  DD +ET  
Sbjct: 101 GVQSKVLTLQWPEGGILTKKGFETQARTLRYQILGQACVKDGIRALLLGHHQDDNVETAL 160

Query: 137 MRSQRDYAEKGM-------------GLSGMC----------------------------- 154
           MR  + + + G+             GL G+                              
Sbjct: 161 MRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQDILKSTNMDGTILHLCSEIP 220

Query: 155 ---------DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204
                       +    +++ RPF    +  + +   +  I +  D +N D  F  R  V
Sbjct: 221 SCSISFAPEKMQVSTGGIYLFRPFRSFSKSRLVATCRENKIPFVSDSTNDDLTFTIRNTV 280

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNIDS 261
           R+ +   D     L+      L  K             ++  +  +         + I  
Sbjct: 281 RQLLNSEDSLPRALQRPSILSLVDKSREQTKKFRELCESILKKVEVLSLDTRFGTMVIKM 340

Query: 262 TLLFYLLRVSAAICGGQISLPG 283
            ++  L +         ISLP 
Sbjct: 341 PMMSELPKHQRNAVQAHISLPD 362


>gi|319936954|ref|ZP_08011364.1| hypothetical protein HMPREF9488_02198 [Coprobacillus sp. 29_1]
 gi|319807890|gb|EFW04469.1| hypothetical protein HMPREF9488_02198 [Coprobacillus sp. 29_1]
          Length = 411

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 12/187 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DSM LL  L                  V++  R  +  +   V D C+   +
Sbjct: 13  VIGVSGGCDSMYLLDTLRK-------KGYHLLVAHVNYNYRHDSYIDYELVCDYCATHGL 65

Query: 83  AHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
                 +  +          AR  RY    E  K      ++  H  DD LETVYM+ +R
Sbjct: 66  PFYYKQFHEADYHDGNFQDQARTLRYRFYKEIYKLYKCDGLILGHHLDDHLETVYMQLER 125

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                 +G+        Y  ++ + RP +R  +++I     +++I + +D +N +  FER
Sbjct: 126 HNTVHYLGI----KEESYVQDMRVIRPLMRSYKDEILQVCHEQHIEYHDDYTNFEIDFER 181

Query: 202 VRVRRFV 208
            R+R  +
Sbjct: 182 DRIRNTI 188


>gi|315498689|ref|YP_004087493.1| pp-loop domain protein [Asticcacaulis excentricus CB 48]
 gi|315416701|gb|ADU13342.1| PP-loop domain protein [Asticcacaulis excentricus CB 48]
          Length = 375

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/351 (20%), Positives = 132/351 (37%), Gaps = 30/351 (8%)

Query: 49  GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108
           G+      +VDH +   + +  R V  +   L +  +V+ W+  KP++GL AAAR AR+ 
Sbjct: 11  GQRPLEVFTVDHGVNPQSAEWARGVEALGRELGLPLTVLRWEGDKPRSGLQAAARRARHH 70

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           LI + A+  +  ++   H  DD  E   MR++         L            ++  RP
Sbjct: 71  LILDAARAKDIRVLCLGHNADDVAEAAAMRAE-GSTVGAPKLWSPAPFWPQGEGMFYLRP 129

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF-VRDIDLHALYLKMKKFQDLR 227
            L   R  +R +L    +S+ +DP+NT+  + R RVR+  V   + H    +     DL 
Sbjct: 130 LLGVGRARLRDWLKTVGMSYVDDPANTNPAYLRARVRQQGVTPSETHRR--RAPSSPDLT 187

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
             +                  +  +      + +     +L       GG   LP +  +
Sbjct: 188 ESI-----------------KVKQMGAAFFYVPTLPPPEMLSALVVCAGGGDKLPRHAEL 230

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE-TTVWDGRYQF-- 344
             +     +  R   ++    I+       I R   ++      PE    +WDGRY+   
Sbjct: 231 AHIRAAASA-GRRRFTLCGARIEAHEGGWLICREPGDMTRNGSRPERIGGIWDGRYRVPT 289

Query: 345 ----QNLSDSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
                 +  +   +   S  +     G+PP + + AL  +   E  + L A
Sbjct: 290 YTIGGEIVPAKGHLNALSREERLRLKGLPPAV-RAALPVLKHNESVRLLAA 339


>gi|61216588|sp|Q7NNL0|TILS_GLOVI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 325

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 129/320 (40%), Gaps = 16/320 (5%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LS    +R  +  L   + +LVAVSGG DS+ LL  L  +  +R    +      +DH  
Sbjct: 11  LSLRRRLRPALGLLPPGSGLLVAVSGGQDSLCLLKLLVDLAPERG---LHLHVGHLDHRW 67

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  ++ + + V+ +C+   +       + ++      AAAR  RY  + + A+ +    +
Sbjct: 68  RPGSERDAQRVAVLCNVWGVPFH---LEIARTPPASEAAARAWRYCWLEQIARGLALERV 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T HT  D+ ETV     R     G+G             + + RP L   R +  ++ L
Sbjct: 125 VTGHTLSDRAETVLFNLLRGSGGAGLGSLDW--ERPLGGGVRLVRPLLGITRAETGAYCL 182

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             ++  C D SN +  F R R+R  +           +++       + +A + L+   L
Sbjct: 183 AHHLPICIDESNANLTFRRNRIRLELMPYLREHFNPLVEQTLARTGDILHAESELLESLL 242

Query: 243 TVHMRSIIAI----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
             H  S++         +  +   L    +R   ++  G+   P +  +  V+  L +  
Sbjct: 243 DEHWHSLVQEGRLHRNTLAALPLALQRRAVRRWLSVGLGRQ--PNFEHIAAVLGCLSAPN 300

Query: 299 RGCVS--IGRVVIDRRANFL 316
           R   S     ++++ +  +L
Sbjct: 301 RTRTSPLAHSLLVEVQGEWL 320


>gi|330807798|ref|YP_004352260.1| transcription factor, ExsB family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375906|gb|AEA67256.1| putative Transcription factor, ExsB family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 442

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 113/305 (37%), Gaps = 18/305 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +A SGG DS    +    V   +       SAI V H L+  A+    +   VC+ L + 
Sbjct: 27  IAFSGGLDSTV--LLHLLVTLSQRQPLPALSAIHVHHGLQAVAEAWPDHCRSVCAALGVP 84

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             VV+ +  +P   +  AAREARYA     A   +  +++TA   DDQ ET+  R  R  
Sbjct: 85  LDVVTVQV-RPGASVERAAREARYAAF--VAAIHSDEVLLTAQHRDDQAETLLFRLLRGA 141

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             KG+        +       + RP L   R ++ ++  Q+ +SW EDPSN D R  R  
Sbjct: 142 GVKGLAAMPPQRPL---GQGHLLRPLLDVSRVELEAYARQQGLSWIEDPSNDDHRHARNY 198

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           +R+ V  +                  +  A  +L         R+      D L + S  
Sbjct: 199 LRQRVFPVLAEQWPQASTTLARSAAHMGEAQTLLDDLARIDLARAATPGVFDWLGLQSLA 258

Query: 264 LFYLLRVSAAICGGQIS--------LPGYRSME--RVMLFLKSGKRGCVSIGRVVIDRRA 313
           L  L  +S A     +S        LP          +       R    +    + R A
Sbjct: 259 LAPLRALSPARQRNALSHWLAPMTLLPDTDHWSGWDSLRDAADDARPIWRLAGGELHRAA 318

Query: 314 NFLWI 318
             +W 
Sbjct: 319 GRVWW 323


>gi|294012454|ref|YP_003545914.1| cell cycle protein MesJ [Sphingobium japonicum UT26S]
 gi|292675784|dbj|BAI97302.1| cell cycle protein MesJ [Sphingobium japonicum UT26S]
          Length = 314

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/177 (32%), Positives = 83/177 (46%), Gaps = 14/177 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VAVSGG DSM LL         R        A +VDH LR+ +  E   V+D C    IA
Sbjct: 28  VAVSGGPDSMALLDLAARAFPGR------VEAATVDHGLRDASAVEAAMVADWCRDGGIA 81

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H+ +  + +  +  + + AR  RYAL+ E         ++TAH  DDQLET+ MR  R  
Sbjct: 82  HATLHPQGA-VRGNVQSWARAQRYALLEEWRAARGLDWLLTAHHADDQLETLLMRLNRGA 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                         +      + RP L  R+ D+ ++ L+R +   +DPSN D RF+
Sbjct: 141 GVG-------GLAGVRARQGAVLRPLLGMRKADLLAYALERGLPHVDDPSNGDARFD 190


>gi|296448863|ref|ZP_06890695.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b]
 gi|296253629|gb|EFH00824.1| tRNA(Ile)-lysidine synthetase [Methylosinus trichosporium OB3b]
          Length = 313

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 119/297 (40%), Gaps = 14/297 (4%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M L++         +    + +  +VDH LR  A +E R V +    L   H ++ W+  
Sbjct: 1   MALMLLAARWSLRETK---RIAVATVDHGLRPEAAEEARRVGEWARALGFEHHILRWEGE 57

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
           KP++ +   AR+ARY L+++ A+T+ A+ I+ AH  DDQ ET+  R  R       GL+G
Sbjct: 58  KPRSRIQERARDARYRLLADCARTVGASAIVAAHHADDQAETILFRLTRGSGV--AGLAG 115

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           M      D      RP L  R++ + +        +  DPSN +  + RVR+R     + 
Sbjct: 116 MAPASRLDGLAL-LRPLLGLRKQALEALCEAAGQPFFRDPSNENPAYARVRLRSLSALLA 174

Query: 213 LHALYLKM-----KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFY 266
              L +        +       +  A A        +   S   ++   +  +   LL  
Sbjct: 175 EQGLSVDALLRLSARAARAEEALVEAAAEAAAALPAMRDASTFRVAAAPMAALPRELLRR 234

Query: 267 LLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
           ++       GG         R+ ER+   L +G     ++G V I    + L I   
Sbjct: 235 VVAAEVMRIGGAEPRLERQERACERLHEALAAGASFKTTLGGVTIALATHALTIRPE 291


>gi|144227507|gb|AAZ44292.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
          Length = 297

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 14/196 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            +      L+ VSGGSDSM LL           +         +++ LR  A  E   VS
Sbjct: 4   KIKSKEKYLIGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVS 54

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C +  +   ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LET
Sbjct: 55  KFCQKYNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLET 114

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPS 193
           V+++ ++       G+    +      N+ I RPFL  R ++ I     Q+ I + +D S
Sbjct: 115 VFLQKKQKKIVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIQICQQKKIPYLDDQS 170

Query: 194 NTDDRFERVRVRRFVR 209
           N   +++R ++R  + 
Sbjct: 171 NFTGKYQRNQIRFLLE 186


>gi|88809954|ref|ZP_01125459.1| hypothetical protein WH7805_09077 [Synechococcus sp. WH 7805]
 gi|88786144|gb|EAR17306.1| hypothetical protein WH7805_09077 [Synechococcus sp. WH 7805]
          Length = 339

 Score =  163 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/300 (21%), Positives = 115/300 (38%), Gaps = 24/300 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +L+A+SGG DSM LL  L  +   R            DH     +    + ++ 
Sbjct: 25  LPRGTTLLLALSGGQDSMALLGLLRDL---RKHHHWTLQLWHGDHGWHPGSACVSKDLAK 81

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL-------IMTAHTF 128
            C++  +   V   +++   T   AAAR  RY+ +S++A+ +N T        ++TAHT 
Sbjct: 82  WCAQEALPLRV--SRSTAEMTSGEAAARAWRYSELSQYAQQLNQTCASSNSCTVVTAHTA 139

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNI 186
            D+ ET+ M+  R     G+G       +  +      + RP L   RE+  +      +
Sbjct: 140 SDRAETLLMQLSRGTDLAGLGSLRQSRPLQANASNGPRLVRPLLDFTREETAAICQDLQL 199

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN------NAVAMLIPK 240
               DPSN+D R ER R+R  +  +         ++   L  +++      NA+  L  +
Sbjct: 200 PVWHDPSNSDLRIERNRIRLELLPVLESLHAGCSRRMALLSERISQVHDTQNALVDLSLQ 259

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
            +      +       L  D      LL+      G +        +E +   +   +  
Sbjct: 260 SINSPGNGLQRPPLQALAPDPR--RTLLQRWLQQRGVRSLQAR--QLEELSRAIGPQQPP 315


>gi|315044575|ref|XP_003171663.1| PP-loop family protein [Arthroderma gypseum CBS 118893]
 gi|311344006|gb|EFR03209.1| PP-loop family protein [Arthroderma gypseum CBS 118893]
          Length = 721

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 63/299 (21%), Positives = 100/299 (33%), Gaps = 62/299 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I +AVSGGSDSM L+     + S      +   A  VDH  R  +  E   V+D   +L
Sbjct: 41  RIGLAVSGGSDSMALVYLCSQLASQGFIPGLDIKAYIVDHKYRPESSHEAHSVADCVEKL 100

Query: 81  RIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +   V++ +    +     G    AR  RY ++ +         ++  H  DD +ET  
Sbjct: 101 GVRSKVLTLQWPDGEALTKKGFETQARMLRYQILGKACTKDGVKALLLGHHQDDNVETAL 160

Query: 137 MRSQRDYAEKGM-------------GLSG------------------MCDTILYD----- 160
           MR  + + + G+             GL G                  M  TI Y      
Sbjct: 161 MRVSKGHRKLGLVGFDEIAPIPECHGLYGVSKSGSATSLQDILRSATMDGTISYPSSEIP 220

Query: 161 ---------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204
                            +++ RPF    +  + +   + NI +  D +N D  F  R  V
Sbjct: 221 PRSFNSNTGEMKVSTGGIYLFRPFRSFSKSRLVATCQENNIPFVSDATNEDHTFTIRNTV 280

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
           RR +    L    L+      L  K                    +  + +ILN D+  
Sbjct: 281 RRLLESETLLPRALQRPSILSLVDKSREQTEKFRELC------EFLLKNVEILNFDTRF 333


>gi|148906402|gb|ABR16355.1| unknown [Picea sitchensis]
          Length = 410

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 116/340 (34%), Gaps = 36/340 (10%)

Query: 9   VRFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           V+   R+L           ILVAVSGG DS+ LL  L  +     +   K   +  DH  
Sbjct: 72  VKRLARNLSDRHLVQAGERILVAVSGGQDSICLLWMLSQLQQSWEW---KVGVVHCDHQW 128

Query: 63  RETA-KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
              +   +  +V+ V   +                     AR  RY ++   A      +
Sbjct: 129 NPQSSAAQASHVAHVAREMGYDFYQSLPTMDAFG---ETRARTWRYGVLHRIALRHAYDV 185

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-------LNLWISRPFLRCRR 174
           ++TAHT  D++ET+     R    +GM                    ++ + RP L   R
Sbjct: 186 VITAHTASDRIETLLHNLFRGTGLQGMQSLTWTREFRVRVPYHKPYKHVRLVRPLLDTTR 245

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK--------FQDL 226
            ++R       +    DPSN +    R R+R  +           + +            
Sbjct: 246 TELRKLCETLQLPLWPDPSNFNLEINRNRIRHELLPYLRENFSSGIDRNLARWVEILHGE 305

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYR 285
              +++    +  K  T     ++ +   I+  +   L   +L+       G+ +   + 
Sbjct: 306 ESFLHSLCENIRSKAETSMDHGVMKLDVSIVESLPLALQRRVLKQFIESHTGKSAC--FD 363

Query: 286 SMERVMLF----LKSGKRGCVSI-GRVVIDRRANFLWITR 320
           ++E++ L         KR  VS+ G   +  +   + + R
Sbjct: 364 TIEKLRLAYGHTSNGNKRVRVSLRGGFEVHLQEKMILLLR 403


>gi|15829251|ref|NP_326611.1| hypothetical protein MYPU_7800 [Mycoplasma pulmonis UAB CTIP]
 gi|61216719|sp|Q98PE3|TILS_MYCPU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|14090195|emb|CAC13953.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 286

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 110/278 (39%), Gaps = 19/278 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DSM LL           F         V++  R ++K + + V D C +  I
Sbjct: 3   LIAVSGGPDSMLLLDV---------FKHHDIVVAHVNYNKRNSSKRDQKIVEDYCFKNNI 53

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +++  + + +      AR+ R+       +  N   I+ AH  DD +ET  ++  + 
Sbjct: 54  KLEILNLTDYEVKGNFHDWARKKRFDFFKLVYEKYNCDEILLAHHKDDFVETFLIQKNQK 113

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  +     +  ++  + I+RPF+    +  I   L  + I + +D +N ++ + R
Sbjct: 114 RKPLYWSI----KSKNFNFGMNINRPFIHKYWKNQILKILDNKQIFFGQDETNKENIYLR 169

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
            ++R  + + +     + +K       K+   +  +   +     ++     Q+ L   S
Sbjct: 170 NKIRNNLLNKEFLKRLIYIKILFLNFFKL-RKIKKIEQDFNKWKEQNFDK--QNFLK--S 224

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
                L+ +  +             +++++ F+ S K 
Sbjct: 225 KFQENLITIFISEKTNNSINLSRGKIQQIIKFINSEKN 262


>gi|170088506|ref|XP_001875476.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650676|gb|EDR14917.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 487

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 86/225 (38%), Gaps = 30/225 (13%)

Query: 14  RSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDR---SFGKIKFSAISVDHCLRETAK 67
             L++P+    + VA SGG DS  LL  ++  L +    S    +  + +VDH L++ + 
Sbjct: 13  HHLIWPSSRTSLAVANSGGPDSTCLLFLINRYLLEHPGSSSQPQRVISFTVDHDLQKKSS 72

Query: 68  DEVRYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           D   +       + + H          V      P       AR+ARYAL+ +     + 
Sbjct: 73  DMANHCRLFAQSIGVEHITSKIPWGEGVYPPRPSPGDMFERTARDARYALLLQTLTRADV 132

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL---------------W 164
            ++   H  DDQ+ET  MR      + G G    C        +               W
Sbjct: 133 DVLAVGHHADDQVETALMRLGMGSTQLGAGGMRACRRWGMGAGIDERSLSWAGHKGMSKW 192

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV 208
           I RP L   ++ I +   Q N+ +  DP+N       R  +RR +
Sbjct: 193 IVRPLLDVGKDRILATCEQNNLEYITDPTNFQPHITIRNAIRRLI 237


>gi|54020383|ref|YP_115689.1| hypothetical protein mhp176 [Mycoplasma hyopneumoniae 232]
 gi|61216451|sp|Q601M6|TILS_MYCH2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|53987556|gb|AAV27757.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 297

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 14/196 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            +      L+ VSGGSDSM LL           +         +++ LR  A  E   VS
Sbjct: 4   KIKSKEKYLIGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVS 54

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C +  +   ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LET
Sbjct: 55  KFCQKYNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLET 114

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPS 193
           V+++ ++       G+    +      N+ I RPFL  R ++ I     Q+ I + +D S
Sbjct: 115 VFLQKKQKKIVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIRICQQKKIPYLDDQS 170

Query: 194 NTDDRFERVRVRRFVR 209
           N   +++R ++R  + 
Sbjct: 171 NFTGKYQRNQIRFLLE 186


>gi|193217036|ref|YP_002000278.1| PP-loop superfamily ATPase/cell cycle protein [Mycoplasma
           arthritidis 158L3-1]
 gi|193002359|gb|ACF07574.1| PP-loop superfamily ATPase/cell cycle protein [Mycoplasma
           arthritidis 158L3-1]
          Length = 307

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 79/207 (38%), Gaps = 16/207 (7%)

Query: 6   IESVRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           I+      ++L    +  L+AVSGG DSM LL                     V++  RE
Sbjct: 2   IDKEELLNKALNDKKSKKLIAVSGGPDSMFLLNLFKEH---------NVVVAHVNYNKRE 52

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIM 123
            +  +   V   C    I + + S K     +      AR+ RY    +         ++
Sbjct: 53  DSNIDETIVRSYCKSHSIPYEIYSIKKGTNIKGNFQDWARKERYHFFKQIYDKYQCDYLL 112

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLL 182
            AH  DD LET  M+ +     +  G+      +     + I RP +    +++I+   +
Sbjct: 113 LAHHKDDFLETAIMQKEAKRKPEYFGI----RPVNSFDGMQIIRPLIFTFWKDEIQKECI 168

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVR 209
           +  I +  D +N    + R  +R+ ++
Sbjct: 169 RLKIKFAIDSTNDKGVYARNIIRQKLK 195


>gi|330723804|gb|AEC46174.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis MCLD]
          Length = 252

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 13/188 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DSM LL  L               A  V++ LR  +  + + V   C + +I
Sbjct: 11  LLAVSGGPDSMFLLNKLK---------NKNIVAAHVNYHLRADSNVDQQIVEKFCQKHKI 61

Query: 83  AHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              ++S  K  +    +   AR  RY   S+  K  N   ++ AH  DD +ETV+++  +
Sbjct: 62  KLEILSSEKKYEDYQNIQHQARLIRYHFFSQIYKKYNCKQLIIAHQKDDFIETVFLQKMK 121

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  G+       LY++N+     F    +E+I + L ++NI +  D SN+ D ++R
Sbjct: 122 KKEVNYWGIK--KKNFLYNMNITRIFLFKYF-KEEIINLLNKKNIHFAIDSSNSKDIYQR 178

Query: 202 VRVRRFVR 209
            ++R  + 
Sbjct: 179 NKIRHKLA 186


>gi|304373319|ref|YP_003856528.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis HUB-1]
 gi|304309510|gb|ADM21990.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyorhinis HUB-1]
          Length = 292

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 13/188 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGG DSM LL  L               A  V++ LR  +  + + V   C + +I
Sbjct: 11  LLAVSGGPDSMFLLNKLK---------NKNIVAAHVNYHLRADSNVDQQIVEKFCQKHKI 61

Query: 83  AHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              ++S  K  +    +   AR  RY   S+  K  N   ++ AH  DD +ETV+++  +
Sbjct: 62  KLEILSSEKKYEDYQNIQHQARLIRYHFFSQIYKKYNCKQLIIAHQKDDFIETVFLQKMK 121

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  G+       LY++N+     F    +E+I + L ++NI +  D SN+ D ++R
Sbjct: 122 KKEVNYWGIK--KKNFLYNMNITRIFLFKYF-KEEIINLLNKKNIHFAIDSSNSKDIYQR 178

Query: 202 VRVRRFVR 209
            ++R  + 
Sbjct: 179 NKIRHKLA 186


>gi|187924484|ref|YP_001896126.1| tRNA(Ile)-lysidine synthetase [Burkholderia phytofirmans PsJN]
 gi|187715678|gb|ACD16902.1| tRNA(Ile)-lysidine synthetase [Burkholderia phytofirmans PsJN]
          Length = 481

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 82/404 (20%), Positives = 137/404 (33%), Gaps = 25/404 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E+V F + +L   A I VA SGG DS  LL A+  V      G  +  A+ V H L   
Sbjct: 14  LEAVGFSLSTLSANARIAVAFSGGVDSSVLLDAVVRVA-----GASRCIALHVHHGLSAH 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +         +  +    + S+     + AAAR+ARY  + +   +     +  
Sbjct: 69  ADAWLAHCEAFARERGVEFAAERVELSRDAGVSVEAAARDARYRALDDMCASRGVATLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+      + +         RP L   R  +  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PEYLPAGALATRVRPLLHLLRAQLEQYASGR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            + W +D SN D R+ R  +R  V    L   +   +           +   L+     +
Sbjct: 188 ALRWIDDESNADTRYARNALRHEVTP-ALAVHFPGFRDALARTAAHAASAQRLLDALARI 246

Query: 245 HMRSIIAISQDILNIDST----------LLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
            M+         L+ D+           LL Y +R    +      L       R     
Sbjct: 247 DMQEASRDEGRALSHDALLAFDDDRALNLLRYWMRTLGLVAASSARLGDALRQLRETGAA 306

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV----WDGRYQFQNLSDS 350
             G    +      +      ++      + P          V    W G   ++     
Sbjct: 307 GEGHGLRIDHAGQALRSYRGLVYWEAGDSSDPADETALAARAVSELAWQGESIWRLPQWR 366

Query: 351 LIQIGPQSYRKADVPSG---IPPIIAQRALSSMPSKEGGKPLLA 391
              +  Q++  A    G   IP  + QRA+ S  S+ GG+ +  
Sbjct: 367 GTFVFAQAHADAAFGEGDAMIPVSVLQRAVLSARSRSGGERMRT 410


>gi|85057872|ref|YP_456788.1| cell cycle protein MesJ [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|123518068|sp|Q2NIN4|TILS_AYWBP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|84789977|gb|ABC65709.1| cell cycle protein MesJ [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 436

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 15/242 (6%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E+++    SL      ++AVSGG DSM LL  L +        KIK   +  +H     
Sbjct: 1   MENIKLAC-SLETNQTYIIAVSGGVDSMALLHYLVA-------QKIKLQVVHFNHLTNSN 52

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  V + C +  +      ++ + PQ    A AR  R   + + A       I+TA
Sbjct: 53  TWKNKELVKNYCLQNSLGFH--YFELNCPQKNFQAQARLLRQQKLMQIAAKHRTPFILTA 110

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD  ET+  +  R      +G SGM     +  +    +PFL   +  I S+     
Sbjct: 111 HHLDDLAETILQKISRSSTL--LGYSGMQIQTSW-TDFIFLKPFLYIPKAKIISYAAFYK 167

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD--IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           I + ED +N    ++R ++R  V        +    ++K+Q   ++  N +      +LT
Sbjct: 168 IPFLEDYTNQKLTYQRNQIRHQVIPYLKTQTSFLQNIQKYQQTLLQAYNFIRKQTLLFLT 227

Query: 244 VH 245
            H
Sbjct: 228 KH 229


>gi|319762814|ref|YP_004126751.1| tRNA(ile)-lysidine synthetase [Alicycliphilus denitrificans BC]
 gi|330824894|ref|YP_004388197.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans K601]
 gi|317117375|gb|ADU99863.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans BC]
 gi|329310266|gb|AEB84681.1| tRNA(Ile)-lysidine synthetase [Alicycliphilus denitrificans K601]
          Length = 335

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 119/332 (35%), Gaps = 26/332 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +S    + +      + V +SGG+DS  LL+A             +  A  V H L+  A
Sbjct: 3   QSFDAAMHAFAPRLPLAVGLSGGADSTALLLACA------GRWPGQVHAFHVHHGLQAAA 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATL---- 121
               ++   +C+RL++  SV               AAR+ARY      A    A      
Sbjct: 57  DGFEQHCVALCARLQVPLSVRRVDARHASGQSPEDAARQARYKAFEALALDNQARAAIGT 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  A   DDQ+ET+ +   R     G+              L  SRP LR    D+R++L
Sbjct: 117 IALAQHADDQVETLLLALSRGAGVAGLAAM---PAQWERGGLHWSRPLLRVAGADVRAWL 173

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            Q+   W EDP+N D+R+ R      +R   L AL      F+D   +     A      
Sbjct: 174 QQQGEHWVEDPTNADERYTR----NRIRRRLLPALQQAFPHFRDTFARSCAHAAQASELL 229

Query: 242 LTVHMRSIIAISQ-----DILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFL 294
             +    + A+ Q      +  +       +LR       G           ++++    
Sbjct: 230 QELARADLAAVGQPPRIAALRLLSRARQANVLRHWLRSAHGTTPASAQLDALLDQIAACA 289

Query: 295 KSGKRGCVSIG-RVVIDRRANFLWITRAVRNL 325
             G R  + +G   V+       W  R V +L
Sbjct: 290 TRGHRIHLKVGSGHVVREAGALGWYNRPVLDL 321


>gi|159904318|ref|YP_001551662.1| ATPase [Prochlorococcus marinus str. MIT 9211]
 gi|159889494|gb|ABX09708.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Prochlorococcus marinus str. MIT 9211]
          Length = 339

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 108/287 (37%), Gaps = 23/287 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + +L+++SGG DSM LL  +  +   R   + K      DH   + +      + +
Sbjct: 29  LPKGSSLLLSISGGQDSMALLKLIVDL---RRLYEWKIFIWHGDHGWHKQSTQIATGLKE 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-------ATLIMTAHTF 128
            C+   +    VS + +K +     AAR  RY  ++ HA+ ++          ++T HT 
Sbjct: 86  WCNNQELRF--VSERATKEKIHSEQAARNWRYECLTAHAQLLSQQNQSSPCHYVLTGHTS 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D+ ET+ +   R     G+G   +  +      + + RP L   RED      + ++  
Sbjct: 144 TDRAETLLLNLSRGTHLSGLGS--LKSSRTLSGQIKLVRPLLIFSREDTAQICKEMDLPV 201

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-----NNAVAMLIPKYLT 243
             DPSN++ R  R R+R  V  +         ++   L  ++     +     ++     
Sbjct: 202 WLDPSNSNMRISRNRIREEVIPVLETLHPGSTRRIASLAERLGSLKDDQEALTILAIEAI 261

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                +    Q ++++       +        G  +       +E +
Sbjct: 262 KDSEGLSR--QKVISLPRNTRRTVFAKWLKQSG--VPALKASQLEDI 304


>gi|262369825|ref|ZP_06063152.1| tRNA(Ile)-lysidine synthetase [Acinetobacter johnsonii SH046]
 gi|262314864|gb|EEY95904.1| tRNA(Ile)-lysidine synthetase [Acinetobacter johnsonii SH046]
          Length = 448

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 58/282 (20%), Positives = 106/282 (37%), Gaps = 20/282 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H L+  SGG D      ++  +         +  AI +DH L++ +     +V + C  L
Sbjct: 32  HFLIGCSGGMD------SMLLLHLMSHLFPKRIRAIYIDHQLQDVSPQWGSFVQEQCYVL 85

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +   + +         + + AR ARYA   +H       +++ AH   DQ ETV +R  
Sbjct: 86  DVPCVIQAVDVD--TGNVESQARSARYAAFQKHLLAN--EILVLAHHQQDQAETVLLRLL 141

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                 G+      D         I RP L   R+ I  +  +  +   +D +N D  ++
Sbjct: 142 SGAGIHGLAAMQSIDI---REQFTIWRPLLALSRQQIELWAAEMQLRNIQDQTNFDTSYD 198

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R   R  +  I L   + KM++       +      ++   LT    S    +  +LN+ 
Sbjct: 199 RAWCRAELWPI-LEKRFPKMQQALARTSYLMQDAETILADVLTQDWASCG--NAAVLNLT 255

Query: 261 STLLFYLLR----VSAAICGGQISLPGYRSMERVMLFLKSGK 298
                   R    +SA + G  +  P +  ++R+   +   K
Sbjct: 256 PFRQLSAPRQRQLLSAWMKGEDLYRPAFDMVQRLFDEVIESK 297


>gi|103487083|ref|YP_616644.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis
           RB2256]
 gi|98977160|gb|ABF53311.1| tRNA(Ile)-lysidine synthetase-like protein [Sphingopyxis alaskensis
           RB2256]
          Length = 284

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 126/286 (44%), Gaps = 24/286 (8%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL  + S+L        +  A +VDH LR+ + DE R V+  C+R  I HS +     
Sbjct: 1   MALLWMMVSLLPG------QVWAATVDHGLRKGSDDEARMVAAFCAREHIPHSTLRPPTP 54

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
                L AAAR  RY L+ +  +      I+TAH  DDQLET+ MR  R     G+    
Sbjct: 55  IRG-SLQAAARTERYRLLEQWREAHALDHIVTAHHADDQLETIVMRLNRASGVGGLA--- 110

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-- 210
                +   N  + RP L  RR ++    L  ++ + +DPSN+DDRF+R R+R  +R   
Sbjct: 111 ----AIRATNGAVLRPLLGWRRRELVDVALDNDLPFIDDPSNSDDRFDRARLRHALRSQT 166

Query: 211 -IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
            +D  A         +    ++  V  LI  +      ++I        +   ++ + LR
Sbjct: 167 ALDPVAAAKSAAWLAEADEALDWTVDRLIADWPDASDIAVIRDEAYPPELFRRIVAHRLR 226

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
            +A             +++ V+  +++G+R    +G ++ID     
Sbjct: 227 ANAPQLA-----LRGAALDGVIAAMRAGRRA--MVGALLIDADRGL 265


>gi|291460211|ref|ZP_06599601.1| tRNA(Ile)-lysidine synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417158|gb|EFE90877.1| tRNA(Ile)-lysidine synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 351

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 111/303 (36%), Gaps = 34/303 (11%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V  F+R    +     IL+A+SGG+DS+ LL+ L  +  + SF      A  V H +R
Sbjct: 5   EKVERFIRERRLIGAGDTILLALSGGADSVYLLLILEKLRGELSF---SLHAAHVQHGIR 61

Query: 64  E-TAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTI- 117
              A+ ++ +  ++  R +I        V   + K   GL   AR  RY  + +    I 
Sbjct: 62  GKEAERDLEFSREIAERFKIPFHGIFVNVPEFSRKHHLGLEEGARLLRYRSLRDCLSEIM 121

Query: 118 --------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
                       I  A   +DQ ETV     R    +G+         +      I RP 
Sbjct: 122 DKAPERAGGRGKIAVAQHGNDQAETVLYHLFRGSGLRGL-------RGMEAEKDGIIRPL 174

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKK 222
           L   +E+I S L ++ I+  ED +N D  + R R+R  +           L  +    + 
Sbjct: 175 LPILKEEILSELSEKGIAHREDSTNRDLSYARNRIRERILPEAERLNAGALPHILRTAEL 234

Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
             +    +      +  K     +         I  +    L  +LR +  +   +   P
Sbjct: 235 IGEAEDLLLERAEEIFRKEGEELLEGGELWGFRISVLSLRPLRPILRRTLLLLMSERLSP 294

Query: 283 GYR 285
           G +
Sbjct: 295 GRK 297


>gi|296809924|ref|XP_002845300.1| PP-loop family protein [Arthroderma otae CBS 113480]
 gi|238842688|gb|EEQ32350.1| PP-loop family protein [Arthroderma otae CBS 113480]
          Length = 717

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 103/322 (31%), Gaps = 59/322 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I +AVSGGSDSM L      ++S      +   A  VDH  R  +  E   V+D   +L
Sbjct: 41  RIGLAVSGGSDSMALAYLCSRLVSPDFIPGLDLKAYIVDHKFRPESSREAHLVADRIEKL 100

Query: 81  RIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            I   V++      +T    G    AR  RY  + +     +   ++  H  DD +ET  
Sbjct: 101 GIQSKVLTIPWPAGETLTKNGFETQARMLRYQALGKACAADSIRALLLGHHQDDNVETAL 160

Query: 137 MRSQRDYAEKGM-------------GLSG------------------MCDTILYD----- 160
           MR  + + + G+             GL G                  M  T+ Y      
Sbjct: 161 MRVSKGHRKLGLIGFDEIAPIPECHGLYGVSKSGFTASLQDIVESTNMDGTVPYPSSRII 220

Query: 161 ---------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204
                            +++ RPF    +  + +      I +  D +N D  F  R  V
Sbjct: 221 ARNINSTSGQMQISTGGVYLLRPFRSFSKPRLVATCQDNKIPFVSDSTNEDRTFTIRNTV 280

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKYLTVHMRSIIAISQDILNIDS 261
           R+ +   DL    L+      L  K         +L    L              L I  
Sbjct: 281 RQLLESEDLLPRALQRPSILSLVDKSREHTEKFRLLCDSLLKKVEILNFDTHFGTLVIKM 340

Query: 262 TLLFYLLRVSAAICGGQISLPG 283
             +  L +        Q SLP 
Sbjct: 341 PAMSELPQDQRKAVDKQTSLPD 362


>gi|170761927|ref|YP_001752156.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|183508435|ref|ZP_02957979.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186701596|ref|ZP_02971305.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168827504|gb|ACA32766.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|182675843|gb|EDT87748.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186700826|gb|EDU19108.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 330

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 101/257 (39%), Gaps = 20/257 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L AVSGG DSM +L              I+     V++  RE++  + + V D 
Sbjct: 12  ISNKKYLAAVSGGPDSMAMLNMYKR--------NIRV-VCHVNYHKRESSDRDQQIVVDF 62

Query: 77  CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           C +  +   ++       +           AR  RY    E  K  N   +  AH FDD 
Sbjct: 63  CRKNNLIIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDF 122

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET YM+  R       G+            + + RP L  R++ ++ +  +  I +  D
Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVINGIIVKRPVLFVRKQTLQRYCDENKIKYGID 178

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            +N  D +ER RVR+ +    L+ +Y   KKF     K +++ A  I     +  +    
Sbjct: 179 ETNELDIYERNRVRKIISSWSLNEVY-DFKKFVIKYNKEHSSFANFID-LSYIEFKKNKY 236

Query: 252 ISQDILNIDSTLLFYLL 268
                +  D  + +YL+
Sbjct: 237 KYDYFIRQDDMVQYYLI 253


>gi|13357633|ref|NP_077907.1| hypothetical protein UU077 [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|61217428|sp|Q9PR68|TILS_UREPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|11356774|pir||A82937 conserved hypothetical UU077 [imported] - Ureaplasma urealyticum
 gi|6899028|gb|AAF30482.1|AE002107_6 conserved hypothetical [Ureaplasma parvum serovar 3 str. ATCC
           700970]
          Length = 333

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 101/257 (39%), Gaps = 20/257 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L AVSGG DSM +L              I+     V++  RE++  + + V D 
Sbjct: 15  ISNKKYLAAVSGGPDSMAMLNMYKR--------NIRV-VCHVNYHKRESSDRDQQIVVDF 65

Query: 77  CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           C +  +   ++       +           AR  RY    E  K  N   +  AH FDD 
Sbjct: 66  CRKNNLIIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDF 125

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET YM+  R       G+            + + RP L  R++ ++ +  +  I +  D
Sbjct: 126 LETAYMQRARQSKALFYGI----KESNVINGIIVKRPVLFVRKQTLQRYCDENKIKYGID 181

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            +N  D +ER RVR+ +    L+ +Y   KKF     K +++ A  I     +  +    
Sbjct: 182 ETNELDIYERNRVRKIISSWSLNEVY-DFKKFVIKYNKEHSSFANFID-LSYIEFKKNKY 239

Query: 252 ISQDILNIDSTLLFYLL 268
                +  D  + +YL+
Sbjct: 240 KYDYFIRQDDMVQYYLI 256


>gi|242763827|ref|XP_002340652.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500]
 gi|218723848|gb|EED23265.1| PP-loop family protein [Talaromyces stipitatus ATCC 10500]
          Length = 630

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 131/418 (31%), Gaps = 93/418 (22%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  I +AVSGG DSM L      +   R   +++  A  VDH  RE + +E   VS   S
Sbjct: 42  PRRIGIAVSGGPDSMALAYLCKQLQVTRPELELEMKAFVVDHKFREESTEEAHKVSSWLS 101

Query: 79  RLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + I   V++         K +      AR  RY  + +         ++  H  DD +E
Sbjct: 102 NMDILSEVLTLDWEAGETPKKKMAFETLARTKRYQALGKACFKNQLNTLLIGHHLDDNVE 161

Query: 134 TVYMRSQRDYAEKGM-------------GLSGMCDTILYD-------------------- 160
           T  +R       +G+             GL G+ ++  ++                    
Sbjct: 162 TGLLRMTPTAKLEGLAGIAPVARIPECHGLWGVSESGSFETIRGRQRSFEFDLDEGKLTH 221

Query: 161 ------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRF 207
                         + + RP L   +  I     + N+ +  DP+N+D     R  +R  
Sbjct: 222 FSADDWSFTMATGGILLCRPLLPFYKASILETCREANVPYVTDPTNSDPTLTMRNTIRSL 281

Query: 208 VRDIDLH---ALYLKMKKFQDLRVKVNNAVAM---LIPKYLTV---HMRSIIAISQDILN 258
           +                   + RV + + ++    L+     +      S + +    L 
Sbjct: 282 LESDKFPRALRPASMSAFLANNRVSLLDIMSETDKLLRDCQLLKFYPNSSTMEVIFPTLP 341

Query: 259 IDS------TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG-----KRGCVSIGRV 307
           +DS       +L   LR    +   +  L       R+            +R   ++  V
Sbjct: 342 VDSPDAQNIRILAAALRRITNLITPRPEL--KNQALRLYERFAQDIFTGQQRDDFTVAGV 399

Query: 308 VIDRRA-----------NFLW-ITR--------AVRNLPTLILYPEETTVWDGRYQFQ 345
               +            + +W I+R         V  +  L        +WD R+  Q
Sbjct: 400 HFKLQESPNNKEGGVLFDNIWHISRTPFMTGQEPVLEIDNLSDEWSAPVLWDNRFWLQ 457


>gi|144575318|gb|AAZ53579.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
          Length = 297

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 14/196 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            +      L+ VSGGSDSM LL           +         +++ LR  A  E   VS
Sbjct: 4   KIKSKEKYLIGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVS 54

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             C +  +   ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LET
Sbjct: 55  KFCQKYNLELKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLET 114

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPS 193
           V+++ ++       G+    +      N+ I RPFL  R ++ I     Q+ I + +D S
Sbjct: 115 VFLQKKQKKIVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIRICQQKRIPYLDDQS 170

Query: 194 NTDDRFERVRVRRFVR 209
           N   +++R ++R  + 
Sbjct: 171 NFTGKYQRNQIRFLLE 186


>gi|217967258|ref|YP_002352764.1| tRNA(Ile)-lysidine synthetase [Dictyoglomus turgidum DSM 6724]
 gi|217336357|gb|ACK42150.1| tRNA(Ile)-lysidine synthetase [Dictyoglomus turgidum DSM 6724]
          Length = 455

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 137/336 (40%), Gaps = 33/336 (9%)

Query: 3   LSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           L  IE  V  F RS   +     I+++VSGGSDS+ L   L+++        +K   + +
Sbjct: 8   LDYIEKKVLNFTRSESLISLGDSIILSVSGGSDSIALSEILYNLSP---ILGLKLHIVYI 64

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH +R+    E   + D  +   I +S +      P+       R+ RY  + + ++ +N
Sbjct: 65  DHHVRKNTYKEKELIKDYATSRNIPYSFLDIY---PKDFTEKTLRDERYKALIKFSEELN 121

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I   HT DDQ+ET+ M        KG G+ G+C   +        RP +   + ++ 
Sbjct: 122 FNKIALGHTLDDQIETIIMNFF-----KGYGMEGLCGIPVKRD--KFIRPIIILSKSEVI 174

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +  ++++ + +D +N      R R+R  +    +  L   +++F    +  +  + +  
Sbjct: 175 EYCERKSLKYIDDFTNLLPITLRNRIRHQI----VPFLKETIQQFPQSVISQSKILYIEN 230

Query: 239 PKYLTVHMRSIIAI----------SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
                + +     +           +D   +   +   +L+        ++S  G   + 
Sbjct: 231 DFLKNISLEYFNKLKGSNTMIEIEREDWNTMHDAIKIRVLKEVFKDFNEELSNEGIFYIL 290

Query: 289 RVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN 324
           + +  +K GK   ++IG V I      +++ +  RN
Sbjct: 291 KEVSEIKEGK--TINIGNVEIYIYNKKIYVYKKERN 324


>gi|308233644|ref|ZP_07664381.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae DSM 15829]
 gi|328944407|ref|ZP_08241869.1| PP-loop family protein [Atopobium vaginae DSM 15829]
 gi|327490991|gb|EGF22768.1| PP-loop family protein [Atopobium vaginae DSM 15829]
          Length = 509

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 125/332 (37%), Gaps = 40/332 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETAKD-EVR 71
           A +L+ VSGG+DS  L +        +   R    I   +   + V+H LR  +   +  
Sbjct: 24  APVLLMVSGGADSSALTLLAATSQLDLEDGRGCAPIAKERLHILHVNHGLRGASAQADEE 83

Query: 72  YVSDVCSRLRIAHSVVSWKNSK--------PQTGLMAAAREARYALISEHAKTI------ 117
           +V ++ S   I   V     ++         +  +    R  RY +  E  K +      
Sbjct: 84  FVLELASHFGIVFHVAHVDVARLAAQKTLSGEKNIENVGRMVRYKVAFELIKKLCQQTHT 143

Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 I+TAHT  D++ET ++      A KG  LSG+C   +      I RP L    E
Sbjct: 144 RVQDARILTAHTASDRVETFFLN-----ATKGSALSGLCS--IPRRRSIIVRPLLDTTHE 196

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK-------FQDLRV 228
           ++   L Q  ++WCED +N D  + R  +R  +           +++        +D   
Sbjct: 197 ELCDMLTQHGMTWCEDQTNHDTHYARAYMRHVIVPKLKQKNPHLIERICSTCDILRDENN 256

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            ++N     +   +     S++ +    L + D  L   ++R++       I L     +
Sbjct: 257 YMDNVARRHLESLIRRKTESVLVLDALRLSSEDVALARRMVRLALMQMACDIRL-DTAHI 315

Query: 288 ERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319
           E ++  + +G         + +      L+I 
Sbjct: 316 EAILRCVAAGIGSLSLANSLSVRVEHGMLFIR 347


>gi|227546576|ref|ZP_03976625.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|312133972|ref|YP_004001311.1| mesj [Bifidobacterium longum subsp. longum BBMN68]
 gi|227212893|gb|EEI80772.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|311773271|gb|ADQ02759.1| MesJ [Bifidobacterium longum subsp. longum BBMN68]
          Length = 388

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 15/239 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +      ++  A+ VDH L+  ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQAGSERVASEAADRCRALG 102

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   ++          GL AAAR+ARY  +   A    A  ++ AHT DDQ ETV +   
Sbjct: 103 LGPVILRNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIGLL 162

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R        L+GM            +RP L   R +         + + +DP+N D    
Sbjct: 163 RSRGVD--ALAGMPQVFTR-SGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219

Query: 197 ---DRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
              + +  R RVR  +           + +      ++       + +     M   +A
Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVTRHFAESARLARMDKEYLDQRSDEVMGEAVA 278


>gi|282852626|ref|ZP_06261968.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gasseri 224-1]
 gi|282556368|gb|EFB61988.1| tRNA(Ile)-lysidine synthetase [Lactobacillus gasseri 224-1]
          Length = 238

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 11/222 (4%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M L   L + L + S    +     +DHCLR+ +  E   +  + +  +I     SW  +
Sbjct: 1   MALFHMLVNFLPNPSK---QLIVAHLDHCLRKDSYLESELLQKLTTAFKIKLIEKSWPVA 57

Query: 93  -KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
             PQTG+ A ARE RYA ++   K      ++TAH  DD +E + ++  R      M   
Sbjct: 58  LHPQTGIEAKAREFRYAFLAHTGKKYQVDYLLTAHHGDDLIENILLKFIRSGDVAEMNSL 117

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
            +   +    ++ + RP ++  ++ +  +  +  + + ED +N +D   R R+R +V  +
Sbjct: 118 QIVGNL---DSMRLLRPLIKYSKDQLLEYDKRNGLDYIEDETNFEDDTLRNRLRHYVVPL 174

Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
               L  +     +   + + + A+L     +     I+ I 
Sbjct: 175 ----LKKETNHLVENAYRFSESAALLSDCQNSFFESLILPID 212


>gi|87123278|ref|ZP_01079129.1| possible MesJ-like protein [Synechococcus sp. RS9917]
 gi|86168998|gb|EAQ70254.1| possible MesJ-like protein [Synechococcus sp. RS9917]
          Length = 350

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 22/251 (8%)

Query: 10  RFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           R  +R    L     +L+A+SGG DSM LL  L  +     +   +      DH  +  +
Sbjct: 12  RRLLRQPHWLPQGGRLLLALSGGQDSMALLALLRDLQPLHRW---QLHLWHGDHGWQAGS 68

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-----PQTGLMAAAREARYALISEHAKTINA-- 119
                 +   C    +  +V     ++     P+    A AR  RY  ++  A+ +NA  
Sbjct: 69  SRIAADLQAWCCAEGLDLAVERVTVTRAALESPERS-EAGARAWRYGALAAEAERLNALH 127

Query: 120 -----TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  ++TAHT  D+ ET+ ++  R     G+G       +  D  L + RP +   R
Sbjct: 128 PQSPCCAVITAHTASDRAETLLLQLARGTDLAGLGGQRSQRPLKSDGELPLVRPLVDFSR 187

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVN 231
            D  +   +  +   +DPSN D  + R R+R  V  +          ++    D    + 
Sbjct: 188 TDTATICQELALPVWQDPSNNDPSYGRNRIRAEVLPVLESLHPGCTERLANLADRMAGLQ 247

Query: 232 NAVAMLIPKYL 242
           ++ + L+   L
Sbjct: 248 DSQSELMDLAL 258


>gi|317150446|ref|XP_001824029.2| hypothetical protein AOR_1_526094 [Aspergillus oryzae RIB40]
          Length = 1612

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 83/244 (34%), Gaps = 46/244 (18%)

Query: 15   SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            S  +P  + +AVSGG+DSM L   L           I  +A  VDH  RE +  E   VS
Sbjct: 1030 SRPFPRRLGLAVSGGADSMALAY-LSKQWEKSRPNDISVTAFVVDHKAREESTREANTVS 1088

Query: 75   DVCSRLRIAHSVV------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                 + +   ++      S K+    T     AR  R+  + +  +      ++  H  
Sbjct: 1089 QWLQDIGVKSEILELTWPESTKSPSKVTAFETHARRLRFQALGKACRDRQIEALLMGHHQ 1148

Query: 129  DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD---------------------------- 160
            DD +ET   R       KG GL+G+ +                                 
Sbjct: 1149 DDTVETTLWRLC--TGAKGAGLAGIPEVTRIPECHGIYGVSESGSSYTIPSRPQRSSAQA 1206

Query: 161  --------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDI 211
                      + I RP L   +  + +   + NI +  DP+N D     R  +R  + + 
Sbjct: 1207 RNDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSDPTNFDPTLTPRNAIRSLLAED 1266

Query: 212  DLHA 215
             L  
Sbjct: 1267 KLPK 1270


>gi|315452584|ref|YP_004072854.1| tRNA(Ile)-lysidine synthase, TilS [Helicobacter felis ATCC 49179]
 gi|315131636|emb|CBY82264.1| tRNA(Ile)-lysidine synthase, TilS [Helicobacter felis ATCC 49179]
          Length = 342

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 14/215 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  SGG DS+ L   L           + F     DH LRE  + E+ +   +    + 
Sbjct: 17  LLGFSGGGDSVALFHLLLE-------HGLNFDLAIFDHGLREQTRAEIAHAKTLGKLYQ- 68

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V           L A  R+ARY        T N T ++ AH  +D+LE + M+  + 
Sbjct: 69  -KRVHVGGAKLSGANLEAKCRKARYEFFENMMDTFNYTHLILAHHLNDKLEWLLMQLGKG 127

Query: 143 YAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
            + +  +G S          N  + RP +   +  +  +L +  + + ED +N+D  F+R
Sbjct: 128 ASLQTLLGFSA----SEKRKNYHLIRPLIYTPKSALLDYLHRHKLRYFEDSTNSDLHFKR 183

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
             +R  +    L+   +     +  +       A+
Sbjct: 184 NLIRHTLATPFLNLSGVASGLVRSFKALEQEKHAL 218


>gi|113953772|ref|YP_729309.1| MesJ-like protein [Synechococcus sp. CC9311]
 gi|113881123|gb|ABI46081.1| possible MesJ homolog [Synechococcus sp. CC9311]
          Length = 331

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 107/299 (35%), Gaps = 15/299 (5%)

Query: 10  RFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           R  +R    L     +L+A+SGG DSM     L  +L  +      F     DH   + +
Sbjct: 16  RQLLRQPNLLPDGETLLIALSGGQDSMA---LLGLLLGLQHLHHWHFQLWHGDHGWHDQS 72

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 + + C    +   +   +N++  TG  A+AR  RY  ++  ++      ++TAH
Sbjct: 73  AATASELKEWCQGQELDLQI--SRNTRDHTGTEASARSWRYQELAALSQQFCCRTVLTAH 130

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQR 184
           T  D+ ET+ ++  R     G+G       +         + RP L   R+D        
Sbjct: 131 TASDRAETLLLQLARGTDLAGLGSLRPIRPLQNNDPNGTRLVRPLLTFSRDDTTQICQDL 190

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +    DPSN +  F R R+R  V  +          ++ +  +   +V ++   L    
Sbjct: 191 QLPVWLDPSNANPAFSRNRIRNDVLPVLEELHPGCSQRIAQLSERVSQVEDSQRTLATLA 250

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           L           + +  +       LL       G  +       ++ + + +  G+  
Sbjct: 251 LEQLRYERGLHRKALKVLPDATRRLLLHHWLQQQG--VRTLSASQLDTLSVAIGPGRPP 307


>gi|291298358|ref|YP_003509636.1| tRNA(Ile)-lysidine synthetase [Stackebrandtia nassauensis DSM
           44728]
 gi|290567578|gb|ADD40543.1| tRNA(Ile)-lysidine synthetase [Stackebrandtia nassauensis DSM
           44728]
          Length = 344

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 14/233 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM       +         I+   ++VDH L+  +      V+D      
Sbjct: 39  VLVACSGGPDSM---ALAAATAFVAPRLGIRAGLVTVDHGLQAGSAKRAATVADWARDAG 95

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
                V + +      G   AAR+ARYA ++E A+ + A+ ++  HT DDQ ETV +   
Sbjct: 96  FEPVEVATVEVDVTAGGPEGAARDARYAALTEAAQRLGASAVLLGHTRDDQAETVLLALA 155

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+                     L   R D         +   +DP NTD  + 
Sbjct: 156 RGSGPRGLAAMPRKRRKFRRP-------LLDLPRADTVRACRDLELPVWDDPHNTDPAYA 208

Query: 201 RVRVR---RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           R R+R     + +         + +   L    N+A+     + L       +
Sbjct: 209 RSRLRAVMPVLAETFGERFVANLARTATLVAADNDALDAYAAEVLAKASHGTL 261


>gi|171920332|ref|ZP_02931673.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902755|gb|EDT49044.1| tRNA(Ile)-lysidine synthetase [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 330

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 101/257 (39%), Gaps = 20/257 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L AVSGG DSM +L              I+     V++  RE++  + + V D 
Sbjct: 12  ISNKKYLAAVSGGPDSMAMLNMYKR--------NIRV-VCHVNYHKRESSDRDQQIVVDF 62

Query: 77  CSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           C +  +   ++       +           AR  RY    E  K  N   +  AH FDD 
Sbjct: 63  CKKNNLIIEILDVDEKVYERYGHIDNFQTKARLIRYDFFKEIGKKYNIENLYIAHNFDDF 122

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET YM+  R       G+            + + RP L  R++ ++ +  +  I +  D
Sbjct: 123 LETAYMQRARQSKALFYGI----KESNVINGIIVKRPVLFVRKQTLQRYCDENKIKYGID 178

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            +N  D +ER RVR+ +    L+ +Y   KKF     K +++ A  I     +  +    
Sbjct: 179 ETNELDIYERNRVRKIISSWSLNEVY-DFKKFVIKYNKEHSSFANFID-LSYIEFKKNKY 236

Query: 252 ISQDILNIDSTLLFYLL 268
                +  D  + +YL+
Sbjct: 237 KYDYFIRQDDMVQYYLI 253


>gi|254252011|ref|ZP_04945329.1| hypothetical protein BDAG_01221 [Burkholderia dolosa AUO158]
 gi|124894620|gb|EAY68500.1| hypothetical protein BDAG_01221 [Burkholderia dolosa AUO158]
          Length = 468

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 143/403 (35%), Gaps = 31/403 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALADMPSDARIAIAYSGGLDSTVLLDAAVRVA-----GASRCIALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A     +     +RL +A   +     +    G+ A+ARE+RYA +    +   A  +  
Sbjct: 69  ANAWAAHAQATATRLGVAFESMRVDVPRDSGLGIEASARESRYAALDAMCEAHGAAALWI 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+             ++   RP LR  R  +  +  QR
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLAAMA-PRYRPGGASVERVRPLLRLLRAQLERYAAQR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM---LIPKY 241
           +++W +D SN D R+ R  +R  V    L  L +    F+D   +     A    L+   
Sbjct: 188 DLAWIDDESNGDTRYARNALRIDV----LPTLAVHFPGFRDALGRAAQHAAAAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFY------LLRVSAAICG-GQISLPGYRSMERVMLFL 294
             +            L+ D+ + F       LLR      G    S     +M R +   
Sbjct: 244 AELDFAGAARDDGRALSRDALIAFDDVRGANLLRFWMRRLGLPGASAARLANMMRQLRDA 303

Query: 295 KSGKRGCVSIGRVVIDRRANFLWIT----RAVRNLPTLILYPEETTVWDGR--YQFQNLS 348
                  V      +    + ++          +  T +  P+    WDG+  +      
Sbjct: 304 HDAHALRVDHAGQCLRLYRDAIYWEAGDSTEPADDDTGMARPDAVLAWDGQQVWHLPAWR 363

Query: 349 DSLIQIGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
            + +     +     VP      + + A     ++ GG+ +  
Sbjct: 364 GTFVFAPADAGSDGAVPEA----LLRSARLVARARAGGERMRT 402


>gi|322691770|ref|YP_004221340.1| hypothetical protein BLLJ_1581 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456626|dbj|BAJ67248.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 388

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 15/239 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +      ++  A+ VDH L+  ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQAGSERVASEAADRCRALG 102

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   ++          GL AAAR+ARY  +   A    A  ++ AHT DDQ ETV +   
Sbjct: 103 LGPVIMRNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIGLL 162

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R        L+GM            +RP L   R +         + + +DP+N D    
Sbjct: 163 RSRGVD--ALAGMPQVFTR-SGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219

Query: 197 ---DRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
              + +  R RVR  +           + +      ++       + +     M   +A
Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVTRHFAESARLARMDKEYLDQRSDEVMGEAVA 278


>gi|159030184|emb|CAO91076.1| tilS [Microcystis aeruginosa PCC 7806]
          Length = 324

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 124/312 (39%), Gaps = 19/312 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A +LVA+S G      L     +L  RS    + +    DH   +     V +V  
Sbjct: 22  LPKNASLLVALSAGQ---DSLCLSQLLLDLRSRWGWQLAIAHCDHRWSQDRGL-VDHVRK 77

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +    ++   +     + P     A AR+ RY  +   A+      ++TAHT  D+ ET 
Sbjct: 78  IAEIWQLPVYI---ATAPPMAETEAKARQWRYQALQTIAQEQGFNYLLTAHTRSDRAETF 134

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R     G  LS +        ++++ RP L   R +  +F   R +    D +N 
Sbjct: 135 LYNLTRGAGSDG--LSALTWLTSLTPDIFLVRPLLNVTRGETFAFCQSRELPIWYDRANE 192

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           + R+ R R+R+ +       L  +++K      ++  A +  +        R +I + Q 
Sbjct: 193 NLRYARNRIRQELLPYLQTNLNPQIEKHLAQTAEILEAESDYLDSIARNIFRQVIDLDQQ 252

Query: 256 ILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSI-GRV 307
            L+      +   +   ++R+  A      S P +  +E V+  +    +    S+ G++
Sbjct: 253 RLDRSPLQILPLAIQRRVIRLFLAQY--LPSSPNFAEVESVVNLITGVNRDATSSLTGKI 310

Query: 308 VIDRRANFLWIT 319
            ++ + N+L+I+
Sbjct: 311 RVEVQQNWLYIS 322


>gi|23466228|ref|NP_696831.1| hypothetical protein BL1680 [Bifidobacterium longum NCC2705]
 gi|61216664|sp|Q8G3S4|TILS_BIFLO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|23326973|gb|AAN25467.1| narrowly conserved hypothetical protein similar to MesJ
           [Bifidobacterium longum NCC2705]
          Length = 388

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 16/243 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DSM L    H V +      ++  A+ VDH L+  ++      +D C  L 
Sbjct: 46  VLVACSGGRDSMALAAVSHIVCTSMG---VRCGAVIVDHGLQAGSERVASEAADRCRALG 102

Query: 82  IAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +   ++          GL AAAR+ARY  +   A    A  ++ AHT DDQ ETV +   
Sbjct: 103 LGPVIMRNATVQARGEGLEAAARQARYDELCAAAHESGAIAVLLAHTMDDQAETVLIGLL 162

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R        L+GM            +RP L   R +         + + +DP+N D    
Sbjct: 163 RSRGVD--ALAGMPQVFTR-SGATFARPLLTLTRAETTGICEDLGVEYWDDPTNGDAVDG 219

Query: 197 ---DRF-ERVRVRRFVRD-IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
              + +  R RVR  +   I+  A +   + F +           L  +   V   ++ A
Sbjct: 220 ELPNDYPLRSRVRHDLLPAIERFAGFNVTRHFAESARLARMDKEYLDQRSDEVMGEAVAA 279

Query: 252 ISQ 254
           + +
Sbjct: 280 VDR 282


>gi|238027917|ref|YP_002912148.1| TRNA(Ile)-lysidine synthetase [Burkholderia glumae BGR1]
 gi|237877111|gb|ACR29444.1| TRNA(Ile)-lysidine synthetase [Burkholderia glumae BGR1]
          Length = 479

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 121/325 (37%), Gaps = 26/325 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++VR  + +L   A I +A SGG DS  LL       + R  G  +  A+ V H L   
Sbjct: 14  LDAVRGALDALPEAATIAIAYSGGLDSSVLLD-----AAVRVAGAARCVALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMT 124
           A   + + +   + L +       +  +    G+ A+ARE RY  +    +   A  +  
Sbjct: 69  ADAWLAHAAACAAALGVCFDAQRVEVPRESGLGVEASARELRYRALDALGERHGAQALWI 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+        +     +   RP L   R  +  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGIAAMA-PRYLPDGATIVRMRPLLSLLRAQLERYAEAR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-------RVKVNNAVAML 237
            + W +D SN D R+ R  +R  V    L  L +    F+D               + +L
Sbjct: 188 ALRWIDDESNADTRYARNALRARV----LPELAVHFPGFRDALARTAQHAAAAQRLLDVL 243

Query: 238 IPKYLTVHMRSIIAI--SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
               L    R    +   + +L  D      LLR      G    LPG  S  R+   +K
Sbjct: 244 AADDLAGATRDDGRVLSRERLLGFDDERGANLLRHWMRTLG----LPG-ASAARLAEMIK 298

Query: 296 SGKRGCVSIGRVVIDRRANFLWITR 320
             +   VS   + ID     L + R
Sbjct: 299 QLRAAQVS-HALRIDHAGQCLRLYR 322


>gi|213027211|ref|ZP_03341658.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 172

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL A SGG DS  LL  L           +   AI + H L   A   VR+   VC R
Sbjct: 14  RRILAAFSGGLDSTVLLHQLVLWRE--RHPDVTLRAIHIHHGLSPHADSWVRHCETVCER 71

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            ++   V     +    G+ A AREARY   ++    +   ++ TA   DDQ ET  +  
Sbjct: 72  WQVPLVVERVTLADNGLGIEAHAREARYRAFAQTL--LPGEVLATAQHLDDQCETFLLAL 129

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           +R     G+   G            + RP LR  R+ +  + ++  
Sbjct: 130 KRGSGPAGLSAMGERSPF---AGTLLLRPLLRETRKTLEQWAVRHG 172


>gi|116748705|ref|YP_845392.1| tRNA(Ile)-lysidine synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116697769|gb|ABK16957.1| tRNA(Ile)-lysidine synthetase [Syntrophobacter fumaroxidans MPOB]
          Length = 470

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 103/298 (34%), Gaps = 22/298 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDV 76
              H+LVAVSGG DS+ LL  L       + G  + S +  +H LR   +  +  +V  V
Sbjct: 21  RGDHVLVAVSGGPDSIALLHLLAHQRESLAIG--RISVLHFNHRLRGAESDADCVFVRSV 78

Query: 77  CSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             ++ +        V          +  AARE R+          +A  I   HT +DQ 
Sbjct: 79  AEKMGLPVVCGEEDVRRYRQGRTISMEMAARERRHRFFRRSLDQYSAQRIALGHTSNDQA 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E V +R  R     G+G SGM           + RP L   R +I  +L    I + ED 
Sbjct: 139 EEVLLRLLR-----GVGPSGMEGMRPLGPGG-VIRPLLFAGRAEILEYLHDLKIPFREDS 192

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-------- 244
           SN +    R  +R  V  +     + ++ +      ++           +          
Sbjct: 193 SNLEPVCRRNVLRLQVLPLLEKHFHPRLVRTLSRHARLVAEEESWWSDRMRAMWPEICPS 252

Query: 245 HMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
                + + ++ L  +   L   + R +     G +       +  +     +   G 
Sbjct: 253 ETSGRVELDREALRTLHPALQRRVFRHAVERFQGHLMGISTAHVLALCRLAATDASGK 310


>gi|315638363|ref|ZP_07893542.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter upsaliensis JV21]
 gi|315481574|gb|EFU72199.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter upsaliensis JV21]
          Length = 322

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 92/251 (36%), Gaps = 16/251 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F++ L      L+A S GSDS  L   L           I F    +++  R+ +  E  
Sbjct: 6   FLQHL-RGRKNLLAFSYGSDSTALFYLL-------ERENIIFDMALINYKTRQNSDLEEE 57

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               +  R      + +    + +      AR+ RYA   +         ++ AH  +D 
Sbjct: 58  EARLLAKRFH--KQIFTQTAPRFKGNFEKNARDFRYAFFEKICIEEGYENLILAHQLNDL 115

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E   M+  +      M L GM        N  + RP L   +  I +FL +  + +  D
Sbjct: 116 FEWFLMQLSKGAGA--MELLGMSA-FEKRENYTLIRPLLNVTKGQILAFLRENKLKYFND 172

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKK-FQDLRVKVNN--AVAMLIPKYLTVHMRS 248
            SN D +F+R  +R    D  L      ++K F  LR  + N   +       +     S
Sbjct: 173 ESNKDLKFKRNFIREHFSDEFLRHFSKGVQKSFSFLREDLKNLGEIEEFEGILICAKNAS 232

Query: 249 IIAISQDILNI 259
           +IA +   L I
Sbjct: 233 LIAKACKKLGI 243


>gi|291320748|ref|YP_003516013.1| hypothetical protein MAGa8640 [Mycoplasma agalactiae]
 gi|290753084|emb|CBH41060.1| Conserved hypothetical protein [Mycoplasma agalactiae]
          Length = 286

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 17/243 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ VSGG DSM LL  + S  SD           +V++ +R  +  +   V   C    
Sbjct: 2   ILLGVSGGPDSMYLLDLISSQRSD-------IVVATVNYNVRHDSAYDAEIVRKFCEDKD 54

Query: 82  IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I    +        +      ARE R++   +  +  N   +  AH  DD LE+ +M+ +
Sbjct: 55  IIFECLEIDQKARFKGNFEKWAREQRFSFFKKIYEKYNCETLYLAHHKDDFLESYFMQKE 114

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRF 199
                   G+     T  Y   + + RP +    + +I   L  + I +  D +N    +
Sbjct: 115 SKRQPDFFGI----KTENYIYGMKVVRPLVDKVFKNEILEALHNKKIKYANDYTNDLPIY 170

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-ILN 258
            R R+R +++ +       K K F D++ + N    +     L          SQD  LN
Sbjct: 171 TRNRIRIWLKSLSNS---QKSKIFDDIQKENNELAVLAQDTVLEYEHWKKAQFSQDEFLN 227

Query: 259 IDS 261
           + +
Sbjct: 228 LSN 230


>gi|254432047|ref|ZP_05045750.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001]
 gi|197626500|gb|EDY39059.1| tRNA(Ile)-lysidine synthase [Cyanobium sp. PCC 7001]
          Length = 359

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/274 (21%), Positives = 100/274 (36%), Gaps = 16/274 (5%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +LVAVSGG DSM L+  L  +   R            DH  R  + D+ R +  
Sbjct: 32  LPAGESLLVAVSGGQDSMALVALLRDL---RRLHGWTLHLWHGDHGWRPASGDQARQLQA 88

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                 +  S+  W+         A+AR  RYA +   A  + AT ++T HT  D+ ET 
Sbjct: 89  WAEAEGLPFSLARWEQPVQD---EASARSWRYASLLARATALGATRVVTGHTASDRAETF 145

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                R    +G+G   +         + ++RP L   R D         +    D  N+
Sbjct: 146 LFNLARGSHRRGLGS--LRPLRPLGGTVMLARPLLGFGRADTARLCGALQLPVWPDAGNS 203

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D RF R R+R  V  + L AL+   ++                 +   + +         
Sbjct: 204 DPRFSRNRLRGEVLPV-LEALHPGAERRLAALAAGLAEEEEAQTELGDLALSG------- 255

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
           +L +   +       + A    ++ L   + ++R
Sbjct: 256 LLGLPPAIDQSRAGRATARLPDRLPLAALQRLQR 289


>gi|148378008|ref|YP_001256884.1| hypothetical protein MAG_7460 [Mycoplasma agalactiae PG2]
 gi|148292054|emb|CAL59446.1| Conserved hypothetical protein [Mycoplasma agalactiae PG2]
          Length = 286

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 17/243 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ +SGG DSM LL  + S  SD           +V++ +R+ +  +V  V   C    
Sbjct: 2   ILLGISGGPDSMYLLDLISSQRSD-------IVVATVNYNVRQDSAYDVEIVRKFCEDKG 54

Query: 82  IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I    +        +      ARE R+A   +  +  N   +  AH  DD LE+ +M+ +
Sbjct: 55  IIFECLEIDQKACFKGNFEKWAREQRFAFFKKIYEKYNCEALYLAHHKDDFLESYFMQKE 114

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRF 199
                   G+     T  Y   + + RP +    + +I   L  + I +  D +N    +
Sbjct: 115 SKRQPDFFGI----KTENYIYGMKVVRPLVGKVFKNEILEALHNKKIKYANDYTNDLPIY 170

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-ILN 258
            R R+R +++ +       K K F D++ + N    +     L          SQD  LN
Sbjct: 171 TRNRIRIWLKSLSNS---QKSKIFDDVQKENNELAELEKETVLEYEQWKKTQFSQDEFLN 227

Query: 259 IDS 261
           +++
Sbjct: 228 LNN 230


>gi|220911090|ref|YP_002486399.1| tRNA(Ile)-lysidine synthetase [Arthrobacter chlorophenolicus A6]
 gi|219857968|gb|ACL38310.1| tRNA(Ile)-lysidine synthetase [Arthrobacter chlorophenolicus A6]
          Length = 351

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/313 (26%), Positives = 119/313 (38%), Gaps = 16/313 (5%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDE 69
            +    YPAH+LVA SGG DSM L           S     +   A+ VDH L+E +   
Sbjct: 5   ALAQAGYPAHVLVACSGGPDSMALAAVASYFARRGSIDSHPVTVGAVVVDHQLQEGSGRV 64

Query: 70  VRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
               +     L +    V +   +    G  AAAREAR+A +   A    A  I+  HT 
Sbjct: 65  AADTAGALRELGLAPVDVHTVTVAGAGMGPEAAAREARHAALEAAAADQGAGAILLGHTL 124

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ E V +   R    +   L+GM  T     +  + RPFL  RR D         +  
Sbjct: 125 DDQAEQVLLGLARGSGTR--SLAGMRPTRAGAGSAVLLRPFLGLRRADTEEICEVEELDP 182

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY------- 241
             DP+NTD  F R R R  V       L   + +       +    A  +          
Sbjct: 183 WHDPTNTDPAFARSRTRVEVLPHLEEKLGPGVAESLARTASILQLDADYLEDVAESTYTS 242

Query: 242 LTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKR 299
           L        ++ +D L  +   + F ++  +AA  GGQ   P YR +      L + G  
Sbjct: 243 LVQWNGGEASLPEDALRDLAPAIRFRVIAKAAAGVGGQQ--PSYRRLVAAEALLRRQGSA 300

Query: 300 GCVSIGRVVIDRR 312
           G V +   V   R
Sbjct: 301 GPVQLPGGVAAYR 313


>gi|71893557|ref|YP_279003.1| hypothetical protein MHJ_0201 [Mycoplasma hyopneumoniae J]
          Length = 286

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 14/187 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           + VSGGSDSM LL           +         +++ LR  A  E   VS  C +  + 
Sbjct: 2   IGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQKYNLE 52

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LETV+++ ++  
Sbjct: 53  LKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQKKQKK 112

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDRFERV 202
                G+    +      N+ I RPFL  R ++ I     Q+ I + +D SN   +++R 
Sbjct: 113 IVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIQICQQKKIPYLDDQSNFTGKYQRN 168

Query: 203 RVRRFVR 209
           ++R  + 
Sbjct: 169 QIRFLLE 175


>gi|297563883|ref|YP_003682856.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848332|gb|ADH70350.1| tRNA(Ile)-lysidine synthetase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 334

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 92/232 (39%), Gaps = 10/232 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +R L      LVA SGG+DS+ L  A+               A++VDH L+E + 
Sbjct: 14  AVRRVLRDLPDDTTALVACSGGADSLALAGAVAFEAPRVGR---TAGAVTVDHGLQEGSD 70

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                V+ V + L +   +V         G  A+AR ARY  +          +++  HT
Sbjct: 71  RRAEDVAKVLAGLGLDPVLVRTVRVTGPGGPEASARRARYEALDGAVAERAPAVVLLGHT 130

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R    +   L+GM   + +       RP L   R  +R    +  + 
Sbjct: 131 LDDQAETVLLGLARGSGAR--SLAGMAPRVGHR-----LRPLLDLDRATVREACARMGLD 183

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
             EDP N D RF R RVR         AL   +         +  A A  + 
Sbjct: 184 AWEDPHNLDPRFARSRVRHEALPALERALGPGIAAALARTAGMLRADADTLD 235


>gi|121602616|ref|YP_988505.1| tRNA(Ile)-lysidine synthetase [Bartonella bacilliformis KC583]
 gi|120614793|gb|ABM45394.1| tRNA(Ile)-lysidine synthetase [Bartonella bacilliformis KC583]
          Length = 660

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 5/214 (2%)

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207
            GL+ +    L    + + RP L  +R+ +R++L  +  SW +DP+N D +FERVRVR  
Sbjct: 362 RGLACIPREALLRGKVRLIRPLLGVKRKILRAYLSLQGTSWIDDPTNEDRKFERVRVRHS 421

Query: 208 VRDIDLHALYLKMKKFQDLRVKVNNAVAMLI--PKYLTVHMRSIIAISQDILNIDSTLLF 265
           +    L  +  K+      R K    +A LI        + R  I      L   ++  F
Sbjct: 422 LHQQKLADIAKKVNHAAVQRRKQAQDIADLILALDICVEYGRCFIRKPAPFLQQHASFPF 481

Query: 266 YLLRVSAAICGGQISLPGYR--SMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323
            +      + G    LP  +  ++ R +  L+  ++   ++   VI+     +   R  R
Sbjct: 482 VVGLFVVLMGGNPYLLPSRKVAALGRKLS-LQHPEKQRFTLAGSVIEYNHKGIVCWREAR 540

Query: 324 NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           N+   IL+P ++ +WDGRYQ  N  D  I++GP 
Sbjct: 541 NIKEEILFPGQSLLWDGRYQITNHDDEAIRVGPA 574



 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 54/92 (58%)

Query: 50  KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL 109
             +   ++VDH LR  +  E   V+ +C    I H +V W+  KP+T +   AR ARY L
Sbjct: 128 PPEIIVVTVDHQLRAESALEAENVAALCRAYHIKHVIVRWEGEKPKTNIAQQARIARYDL 187

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           + + A+   ATLIMT HT +DQ+ET +MR QR
Sbjct: 188 LFKEAEKQGATLIMTGHTLNDQVETYHMRRQR 219



 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 1  MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK 50
          MF+   ++V F          +++AVSGGSDS+ LL  L       S   
Sbjct: 1  MFVELAKNV-FKESDFAQCQKLILAVSGGSDSLALLFLLRDYFKTWSAAD 49


>gi|163857761|ref|YP_001632059.1| cell cycle protein MesJ [Bordetella petrii DSM 12804]
 gi|163261489|emb|CAP43791.1| cell cycle protein MesJ [Bordetella petrii]
          Length = 367

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 128/325 (39%), Gaps = 33/325 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VAVSGG+DS  +L A  + L+ R    I      V H L+  A D   +V  +   L
Sbjct: 55  RLAVAVSGGADS-AMLAAHAAPLARR--LGIDLLIFHVHHGLQAAADDWAAHVQALGRIL 111

Query: 81  RIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +++ H+  +   +    G+ AAAR+ARYA +++ A+   A  I+ AH   DQ ETV +R 
Sbjct: 112 QVSVHTSRAQVRADSGLGIEAAARDARYAALADLARQHEAGHILLAHHQGDQAETVLLRL 171

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR----SFLLQRNISWCEDPSNT 195
            R    +GM         +    L   RP+L   R DI     +F  Q      +DP+N 
Sbjct: 172 LRGAGVQGMAAM---APSMPRDGLLYLRPWLNQGRADILRAAQAFAAQHGWQPVQDPTNA 228

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           D R+ R  VR  +  +    L  +   +Q         +A        V    + A+   
Sbjct: 229 DPRYTRAAVRELLTPV----LDARWPGWQARLADHARHMADAAGILAEVARADLAALQPS 284

Query: 256 I----------LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS------GKR 299
                        + +     +LR    + G    +P    +  ++  L+        ++
Sbjct: 285 ADLASFALAPWRELSAARQAQVLRYWLHLHG--ARMPTEARLADLLRQLRQLHSLGHDRQ 342

Query: 300 GCVSIGRVVIDRRANFLWITRAVRN 324
             V+  R VI      +WI    ++
Sbjct: 343 MRVTHARHVIRCHRGRVWIEPRGQD 367


>gi|297243772|ref|ZP_06927702.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis AMD]
 gi|296888193|gb|EFH26935.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis AMD]
          Length = 372

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 113/295 (38%), Gaps = 32/295 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS+ L      V + R    I+   + VDH L+  + +     +  C +  
Sbjct: 45  VLIACSGGRDSLALTALSVIVCASRG---IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101

Query: 82  IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           I      + S        G  +AAR+ARY  I E AK   A  ++ AHT +DQ ETV M 
Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARKARYQAIIEVAKKQQAAAVLLAHTANDQAETVMMG 161

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +     +   ++GM   +    N+  +RP ++  RED         ISW +DP+N DD 
Sbjct: 162 LKDSAGLE--AVAGMKA-VTLRQNVLFARPLIKLTREDTTGICEDLGISWWDDPTNGDDI 218

Query: 199 ---------F-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
                    +  R RVR  +       +    + F    V + +  A +    L      
Sbjct: 219 SQNEELSENYPLRSRVRHTL-------MPYISRFFNANMVTLLSRGAEIARDDLDYINSQ 271

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +   S  ++  D       L+            P  R   R+++   S      S
Sbjct: 272 VDEASSQVMEFDKNAKTVRLKADKL----AQYHPSIRR--RIIVRALSELGLRFS 320


>gi|313678897|ref|YP_004056637.1| tRNA(Ile)-lysidine synthetase [Mycoplasma bovis PG45]
 gi|312950653|gb|ADR25248.1| tRNA(Ile)-lysidine synthetase [Mycoplasma bovis PG45]
          Length = 286

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 13/225 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+ VSGG DSM LL  L+S   D           +V++ +RE +  +V  V   C    
Sbjct: 2   ILLGVSGGPDSMYLLDLLYSKRKD-------IVVATVNYNVRENSSYDVEVVRKYCQEKE 54

Query: 82  IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           I    +    +   +      AR  R+    +  +  N   +  AH  DD +E+ +M+ +
Sbjct: 55  IIFEHLEIDKNACFKGNFEQWARNIRFDFFKKLYEKYNCEALYLAHQKDDFIESYFMQKE 114

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRF 199
            +      G+    +       + + RP +    + +I  +L +  I +  D +N    +
Sbjct: 115 SNRKPDFFGIRAQNEIF----GMNVLRPLVNKVFKSEILDYLHKNKIDYAYDYTNDLTIY 170

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            R ++R  ++++        + +   L   +      ++ +Y+  
Sbjct: 171 TRNKIRDRLKNLSNKEKSKIIDEINKLNQNLQMTENEVLSEYIEW 215


>gi|298252658|ref|ZP_06976452.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis 5-1]
 gi|297533022|gb|EFH71906.1| tRNA(Ile)-lysidine synthase MesJ [Gardnerella vaginalis 5-1]
          Length = 372

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 112/295 (37%), Gaps = 32/295 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS+ L      V + R    I+   + VDH L+  + +     +  C +  
Sbjct: 45  VLIACSGGRDSLALTALSVIVCASRG---IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101

Query: 82  IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           I      + S        G  +AAR ARY  I E AK   A  ++ AHT +DQ ETV M 
Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARNARYQAIIEVAKKQQAAAVLLAHTANDQAETVMMG 161

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +     +   ++GM   +    N+  +RP ++  RED         ISW +DP+N DD 
Sbjct: 162 LKDSAGLE--AVAGMKA-VTLRQNVLFARPLIKLSREDTTGICEDLGISWWDDPTNGDDI 218

Query: 199 ---------F-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
                    +  R RVR  +       +    + F    V + +  A +    L      
Sbjct: 219 SKNEELSENYPLRSRVRHTL-------MPYISRFFNANMVTLLSRGAEIARDDLDYINSQ 271

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +   S  ++  D       L+            P  R   R+++   S      S
Sbjct: 272 VDEASSQVMEFDKNAKTVRLKAEKL----AQYHPSIRK--RIIVRALSELGLRFS 320


>gi|72080544|ref|YP_287602.1| hypothetical protein MHP7448_0205 [Mycoplasma hyopneumoniae 7448]
          Length = 286

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 14/187 (7%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           + VSGGSDSM LL           +         +++ LR  A  E   VS  C +  + 
Sbjct: 2   IGVSGGSDSMFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQKYNLE 52

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             ++S+ + K +  L +  R  RY    +  K  N T ++  H  DD LETV+++ ++  
Sbjct: 53  LKILSFDSFKIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQKKQKK 112

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDRFERV 202
                G+    +      N+ I RPFL  R ++ I     Q+ I + +D SN   +++R 
Sbjct: 113 IVTFWGIHKKNNLF----NMEILRPFLYWRTKKQIIRICQQKRIPYLDDQSNFTGKYQRN 168

Query: 203 RVRRFVR 209
           ++R  + 
Sbjct: 169 QIRFLLE 175


>gi|283783579|ref|YP_003374333.1| tRNA(Ile)-lysidine synthetase [Gardnerella vaginalis 409-05]
 gi|283441060|gb|ADB13526.1| tRNA(Ile)-lysidine synthetase [Gardnerella vaginalis 409-05]
          Length = 372

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/295 (24%), Positives = 112/295 (37%), Gaps = 32/295 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+A SGG DS+ L      V + R    I+   + VDH L+  + +     +  C +  
Sbjct: 45  VLIACSGGRDSLALTALSVIVCASRG---IRCGVVIVDHHLQPHSTEIANIAAKHCLQSG 101

Query: 82  IAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           I      + S        G  +AAR ARY  I E AK   A  ++ AHT +DQ ETV M 
Sbjct: 102 IDEKYVYIQSVNVEDSGEGEESAARNARYQAIIEVAKKQQAAAVLLAHTANDQAETVMMG 161

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            +     +   ++GM   +    N+  +RP ++  RED         ISW +DP+N DD 
Sbjct: 162 LKDSAGLE--AVAGMKA-VTLRQNVLFARPLIKLSREDTTGICEDLGISWWDDPTNGDDI 218

Query: 199 ---------F-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
                    +  R RVR  +       +    + F    V + +  A +    L      
Sbjct: 219 SKNEELSENYPLRSRVRHTL-------MPYISRFFNANMVTLLSRGAEIARDDLDYINSQ 271

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
           +   S  ++  D       L+            P  R   R+++   S      S
Sbjct: 272 VDEASSQVMEFDKNAKTVRLKAEKL----AQYHPSIRK--RIIVRALSELGLRFS 320


>gi|33864611|ref|NP_896170.1| MesJ-like protein [Synechococcus sp. WH 8102]
 gi|33632134|emb|CAE06590.1| possible MesJ homolog [Synechococcus sp. WH 8102]
          Length = 349

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 101/281 (35%), Gaps = 13/281 (4%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           AVSGG DSM LL+ L  +           +    DH     +      +   C +  +  
Sbjct: 50  AVSGGQDSMALLVLLQELQ---RLHHWPLNIWHGDHGWHSGSAVIAADLRSWCQQRDLPI 106

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            V   +  +  T   A+AR  RY+ + + A+ + A ++ T HT  D+ ET+ ++  R   
Sbjct: 107 QVD--QAPQGSTASEASARHWRYSQLQQRAEELGADVV-TGHTASDRAETLLLQLARGTD 163

Query: 145 EKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
             G+G       +  D      + RP L   R D  +      +    DPSN    F R 
Sbjct: 164 LAGLGALRPVRPLFNDSPDGAQLRRPLLGFSRADTAAVCRDLQVPIWHDPSNQSPAFARN 223

Query: 203 RVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
           R+R  V  +          +M    +   ++ +    L    L     S     + +  +
Sbjct: 224 RIRAEVLPVLEQLHPGCSQRMANLAERTSQLRDTQQELSQLALQPLRTSTGLDRRRLGAL 283

Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +    LL +  A  G  ++      +E++   L     G
Sbjct: 284 QPSTRRQLLVIWLAQQG--VTALNAALLEQLTDRLALSAAG 322


>gi|157736476|ref|YP_001489159.1| tRNA(Ile)-lysidine synthase [Arcobacter butzleri RM4018]
 gi|157698330|gb|ABV66490.1| tRNA(Ile)-lysidine synthase [Arcobacter butzleri RM4018]
          Length = 326

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 15/210 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S +  +  L+A S G DS  L   L           I F    V++ +R  +KDEV Y  
Sbjct: 6   SAIKESKNLLAFSAGVDSSALFFLLLK-------QNIPFDIAIVNYNVRVQSKDEVNYAK 58

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           ++ S+      +   K     +     AR+ RY    E     +  +++TAH  +D+LE 
Sbjct: 59  ELASKYNKQIYIKDIKLES-TSNFEKMARDIRYKFFEEIIDENSYEVLITAHQLNDKLEW 117

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
             M+       KG GL  +     ++   N  + +P L   ++++ +FL Q NI +  D 
Sbjct: 118 FLMQF-----TKGAGLVELIGFNEFEQKENYKVYKPLLEITKKELENFLKQENIKYFIDN 172

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           SN D++++R   R    D  L      +KK
Sbjct: 173 SNFDEKYKRNYFRHNFSDKLLSEYTNGIKK 202


>gi|254411176|ref|ZP_05024953.1| PP-loop family [Microcoleus chthonoplastes PCC 7420]
 gi|196181677|gb|EDX76664.1| PP-loop family [Microcoleus chthonoplastes PCC 7420]
          Length = 336

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 114/304 (37%), Gaps = 25/304 (8%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R L+ P+  +LVAVSGG DS+     +  +L  +   K + +    DH      K    +
Sbjct: 21  RQLLAPSRPVLVAVSGGQDSL---CLMKLLLDLQPKWKWQLAIAHCDHRW-PADKGLADH 76

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +  V     I   +         T    AAR+ RY  + + A+T     ++TAHT  D+ 
Sbjct: 77  IEQVAQSWAIPFYLEIADQV---TTSEGAARQWRYQALGKIAQTYQYQYVVTAHTQSDRA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV     R     G  L  +         + + RP L   R +   F+ Q+++    D 
Sbjct: 134 ETVLYNLIRGTGVDG--LQSLTWQRPLVAGVQLVRPLLEVTRRETGEFVEQQHLPVWLDA 191

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
            N D R+ R R+R+ V          +++         +   V  L     ++  +++ +
Sbjct: 192 YNQDLRYARNRIRQEVLPYLKTHFNPRVETALGHTAELLRADVEYLETAARSLREQAMGS 251

Query: 252 ISQD------------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
           +S++            +   D  L    +R    I   Q     +  +E +   +++  R
Sbjct: 252 MSENEPTTTLKLNRLILRQADLALQRRAIRQFLTIV--QPKATNFEQIEAITALIEAPNR 309

Query: 300 GCVS 303
              S
Sbjct: 310 SRTS 313


>gi|255323491|ref|ZP_05364622.1| tRNA(Ile)-lysidine synthase [Campylobacter showae RM3277]
 gi|255299528|gb|EET78814.1| tRNA(Ile)-lysidine synthase [Campylobacter showae RM3277]
          Length = 328

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 12/206 (5%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+A S G DS  L   L           +KF    VD+ +R  +KDEV    D+
Sbjct: 10  LKSGRNLLAFSHGVDSTALFYLL-------DEAGVKFDLAIVDYNVRAQSKDEVASARDL 62

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            ++      V S +    ++     AR ARY    +  +      ++ AH FDD+ E   
Sbjct: 63  AAKFNKQIYVKSVRLG--ESNFEHEARAARYEFFGQICREQGYENLILAHQFDDKFEWFL 120

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R        L GM +    + +  I+RP L  R+ ++  FL +RN+ +  D +N  
Sbjct: 121 MQLGRGAGLSE--LLGMQELETRE-DYVIARPLLGVRKCELERFLRERNLKYFTDETNLT 177

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKK 222
           D+F+R  VR    +  L+  +  +KK
Sbjct: 178 DQFKRGFVRAKFSEPFLNEYFGGVKK 203


>gi|116668717|ref|YP_829650.1| tRNA(Ile)-lysidine synthetase [Arthrobacter sp. FB24]
 gi|116608826|gb|ABK01550.1| tRNA(Ile)-lysidine synthetase [Arthrobacter sp. FB24]
          Length = 376

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 111/290 (38%), Gaps = 22/290 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRETAKDEVRYVS 74
           YP  +LVA SGG DS+ L  A+ S    R       +   A+ VDH L+  +       +
Sbjct: 34  YPERVLVACSGGPDSLALA-AVASYFGRRGHVDGHPVSVGAVVVDHQLQPGSAAVAAQTA 92

Query: 75  DVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           DV   L +    V     +    G  AAAR+AR+A + E A    A +I+  HT DDQ E
Sbjct: 93  DVLRDLGLSPVDVRQVDVASTGIGPEAAARDARHAALEEAAAQAGANVILLGHTLDDQAE 152

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            V +   R    + +            +   + RPFL  RR D         +    DPS
Sbjct: 153 QVLLGLARGSGTRSLAGM-------RPVRGLLLRPFLGLRRADTLEICAVEGLDPWRDPS 205

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK-------YLTVHM 246
           N D  F R R R  V  +    L   + +       +    A  +          L    
Sbjct: 206 NADPSFARSRTRVEVLPMLEDKLGPGVAESLARTAAILQLDADYLDDVANSTYEQLAEQS 265

Query: 247 RSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
              I++ +  L  +   + F ++  +AA  GGQ   P Y+ +      L+
Sbjct: 266 GGEISLPEAALGELAPAIRFRVIAKAAAAVGGQQ--PSYQRLLAAEALLR 313


>gi|320353156|ref|YP_004194495.1| tRNA(Ile)-lysidine synthetase [Desulfobulbus propionicus DSM 2032]
 gi|320121658|gb|ADW17204.1| tRNA(Ile)-lysidine synthetase [Desulfobulbus propionicus DSM 2032]
          Length = 345

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 132/341 (38%), Gaps = 40/341 (11%)

Query: 2   FLSPIE-SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
            L P+E ++R  +R          ILV VSGG+DS+     LH + + R    +   A  
Sbjct: 1   MLHPLEQTIRQTLRRESLAGAGDRILVGVSGGADSL---ALLHLLAALRGEISLTLIAAY 57

Query: 58  VDHCLRETA--KDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALIS 111
           VDH LR      +    V +  + L I    A + V  + ++ +  L  AAREARY  + 
Sbjct: 58  VDHGLRPKETPAEWAC-VQEAAAVLGINSVRAVADVHGRAARQKLSLEHAAREARYQALG 116

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
              +   A L+  AHT DDQ E + +R  R    K +    M           + RP L 
Sbjct: 117 ALIRQQGANLLAVAHTADDQAEEILLRLFRGGGRKALSGMRMRA-------GHLIRPLLA 169

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR--------RFVRDIDLHALYLKMKKF 223
            R+  + ++L  + I +C D SN D RF R R+R                 AL       
Sbjct: 170 TRKAMLLAYLRDQGIGYCHDSSNDDRRFLRNRIRLDLLPLLELDYDPGIRQALLKTAANL 229

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGG 277
           ++    +   +A      +T+      A     L+      +   L   L+       G 
Sbjct: 230 REDEDLLEQLLAARWEAVVTIEQAVEAACPIARLDRSPFRGLHPALQRRLVERLLWTLG- 288

Query: 278 QISLPGYRSMERVMLFLKSGKRGC-VSIG-RVVIDRRANFL 316
             ++  Y  +  V+   + G+ G  + +G  + +  R + L
Sbjct: 289 --AVARYDHILAVLEAARHGRTGSELHLGQGLRVRVRRDSL 327


>gi|294338861|emb|CAZ87195.1| putative tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine
           synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) TilS
           [Thiomonas sp. 3As]
          Length = 350

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 137/322 (42%), Gaps = 16/322 (4%)

Query: 5   PIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            + ++R F            I +A SGG+DS  LL+A  ++     +G  +  A+ V+H 
Sbjct: 27  ALAALRRFASQNPGVAQAERIGIAFSGGADSTALLLAARTL-----WGGGRLCALHVNHG 81

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINAT 120
           L+ +A+   ++ +  C+ L +A++  + +        L   AREARY  +++ A+  N  
Sbjct: 82  LQTSAQLFAQHCAQACAALDVAYAEATLQVDVARGQSLEEVAREARYLALAKLAREQNCA 141

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++ A   DDQ+ET+ +   R    +G+         +       +RP L C   ++RS+
Sbjct: 142 VVLLAQHGDDQVETLLLALLRGAGPRGLAAM---PAQMQRHGCSFARPLLDCGAAELRSW 198

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAML 237
           L  + +S+ +DP N D  F R R+R  +  +      A    + +   L    +  +   
Sbjct: 199 LKAQAVSFLDDPMNADPAFRRSRIRHELVPVLARLEPAYRQTLGRSAALCAAADAQIQST 258

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER-VMLFLKS 296
             + L + M+        +  + +     +LR+     G ++       + R V+   + 
Sbjct: 259 AAQQLRLCMQPQGLDLAALRALGAVSASEVLRLWLRQNGQRLDRARTDELVRQVLRTGQG 318

Query: 297 GKRGCVSIGRVVIDRRANFLWI 318
             R  + +   ++ R+   L +
Sbjct: 319 AHRLELRLPGCILQRQGACLRL 340


>gi|290958428|ref|YP_003489610.1| hypothetical protein SCAB_39801 [Streptomyces scabiei 87.22]
 gi|260647954|emb|CBG71059.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 388

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 118/305 (38%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           ++   I+VDH L+  +      V      L 
Sbjct: 89  VLVACSGGADSMALASALAFEAPKLG---VRAGGITVDHGLQPGSDLRAEEVVLRLRELG 145

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  +           G  AAAR+ARYA +    +   A  ++  HT DDQ ETV +   R
Sbjct: 146 LDPAESVAVTVGRDGGPEAAARDARYAALDAALERHGAAAVLLGHTRDDQAETVLLGLAR 205

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM        +    RPFL+  R+  R   + +++   +DP NTD  + R
Sbjct: 206 GSGIR--SLSGMAAVS--GADGRYRRPFLQLDRQTARKACMVQSLPVWDDPHNTDPAYTR 261

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT-----VHMRSIIAISQDI 256
            R+R         AL   + +      +++   A  +  +       V   + +     +
Sbjct: 262 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWARQAEPGVRDAAGLLECAKL 321

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVVIDRRAN 314
             +   +   +LR  A   G        R +E V   +    G+      GRVV  R+  
Sbjct: 322 YALPPAVRRRILRRVAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGRVVAQRQGG 381

Query: 315 FLWIT 319
            L I 
Sbjct: 382 RLVIR 386


>gi|255326128|ref|ZP_05367215.1| tRNA(Ile)-lysidine synthase [Rothia mucilaginosa ATCC 25296]
 gi|255296839|gb|EET76169.1| tRNA(Ile)-lysidine synthase [Rothia mucilaginosa ATCC 25296]
          Length = 377

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 110/293 (37%), Gaps = 26/293 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS   L            G ++  AI VDH L+E +       +   + L 
Sbjct: 53  LLVACSGGPDS---LALAAIAAHFARRGDVRVGAIIVDHDLQEDSAAVAAQTAQTLTELG 109

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +    +   +      G   AAR ARYA  ++  +   A  ++  HT DDQ ETV +   
Sbjct: 110 LHPVIIEKVQVPVGNMGPEMAARTARYAAFTKAVEATGARAVLLGHTLDDQAETVLLGLS 169

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +   L+GM    + +  +   RPFL  RR D+        ++   DP+NTD+   
Sbjct: 170 RGSGTR--SLAGMPPVRV-EGGVTYLRPFLGLRRTDMLDICDAETLTPWIDPTNTDETLM 226

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----------HMRSI 249
           R R+R  V       L   + +       V    A  + +                +R I
Sbjct: 227 RARIRHSVLPYLEEHLGGDVARSLARTAAVAGPDAEYLDEQAHAAYEQALLPAGTAVRGI 286

Query: 250 IAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
                 +L+      +   L   +L  +    GG+   PG+  ++ +  F   
Sbjct: 287 EREDAVLLDRAQVAALHPALRLRVLATACKAAGGEN--PGFERLQALDSFTAE 337


>gi|194246666|ref|YP_002004305.1| tRNA(Ile)-lysidine synthase [Candidatus Phytoplasma mali]
 gi|193807023|emb|CAP18459.1| tRNA(Ile)-lysidine synthase [Candidatus Phytoplasma mali]
          Length = 415

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 88/206 (42%), Gaps = 15/206 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +++VSGG DSM LL  L           I+ + +  +H  R+ +  +   V + C +  I
Sbjct: 16  IISVSGGVDSMVLLNVLF-------HKNIRLAVVHFNHLKRKESFKDKILVENYCLKNNI 68

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
                 ++           +R  R   +   A       I+TAH  DD  E ++M+  R 
Sbjct: 69  PFF--YFEIKPLSNNFQNESRLLRQKNLQSVALLYRTYYIITAHHLDDLAENIFMKISRG 126

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            +   +G SG         + +  +PFL   +++I ++  + NI + +D +NT D ++R 
Sbjct: 127 SSL--LGYSGGMQVKQKISDFYFLKPFLYVNKKEILNYAKKNNIHYLDDITNTLDIYKRN 184

Query: 203 RVRRFVRDIDLHAL----YLKMKKFQ 224
            +R  +       +    ++K+  FQ
Sbjct: 185 EIRNQIIPWFKKDINFLKHIKIYHFQ 210


>gi|257459329|ref|ZP_05624442.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter gracilis RM3268]
 gi|257443258|gb|EEV18388.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Campylobacter gracilis RM3268]
          Length = 333

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 120/305 (39%), Gaps = 26/305 (8%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           +L+     L+A S G DS  L   L           +KF    VD+ +R  +KDEV    
Sbjct: 13  ALLRAGKNLLAFSHGVDSTALFYLL-------DEAGVKFDLAIVDYNVRAQSKDEVASAR 65

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  +      V S +     +     AR ARY   +E  +      ++ AH FDD+ E 
Sbjct: 66  YLAVKFNKQIYVKSVRLGA--SNFEHEARAARYDFFAEICRERGYENLILAHQFDDKFEW 123

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             M+  R        L GM + +    +  I+RP L  R+ ++  FL +RN+ +  D +N
Sbjct: 124 FLMQLGRGAGLSE--LLGMQE-LEASEDYVIARPLLGVRKCELERFLRERNLKYFTDETN 180

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
             DRF+R  +R    +  L+  +  +KK      +     A+ +   ++     I  + +
Sbjct: 181 LTDRFKRGFIRAKFSEPFLNECFGGVKK----SFEFLATDALSLTPEISNPAPKIYLVKR 236

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
                        LR  +  C     +            L++G   CV  G+V +    N
Sbjct: 237 GT---------SELRGVSLTCKRLGLVLSSAQRNECARCLENGAD-CVLGGKVAVGAGEN 286

Query: 315 FLWIT 319
           F+++T
Sbjct: 287 FIFVT 291


>gi|223038944|ref|ZP_03609236.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           rectus RM3267]
 gi|222879917|gb|EEF15006.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           rectus RM3267]
          Length = 332

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 117/311 (37%), Gaps = 26/311 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+A S G DS  L   L           +KF    VD+ +R  +KDE+     +
Sbjct: 14  LKSGQNLLAFSHGVDSTALFYLL-------DEAGVKFDLAIVDYNVRAQSKDEITSARQL 66

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +      V S       +     AR ARY   SE  +      ++ AH FDD+ E   
Sbjct: 67  ALKFNKQIYVKSVCLGA--SNFEHEARAARYEFFSEICREHGYENLILAHQFDDKFEWFL 124

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R        L GM + +    +  I+RP L  R+ ++  FL +RN+ +  D +N  
Sbjct: 125 MQLGRGAGLSE--LLGMQE-LEAREDYVIARPLLGVRKCELERFLRERNLKYFTDETNLT 181

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +RF+R  +R    +  L   +  +KK      +   A A+ +   ++     I  + +  
Sbjct: 182 ERFKRGFIRAKFSEPFLDEYFSGVKK----SFEFLAADALNLTPEISNPAAKIYLVKRGP 237

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
                      LR     C     +         +  L++G   CV  G+V +     F+
Sbjct: 238 ---------SELRGVDQACKRLGLVLSSAQRNECVRCLENGAD-CVLGGKVAVGAGEKFI 287

Query: 317 WITRAVRNLPT 327
           ++T   +    
Sbjct: 288 FVTPYAKPAME 298


>gi|297623312|ref|YP_003704746.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
 gi|297164492|gb|ADI14203.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093]
          Length = 556

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 69/271 (25%), Positives = 102/271 (37%), Gaps = 18/271 (6%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           R  +R       +LVAVSGG DS+    AL  +L      +       +DH LR  A + 
Sbjct: 9   RALLRLAPEARRLLVAVSGGGDSV----ALLRLLLALPEPRWGLEVAHLDHALRPDAAEA 64

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +V  +C    +A        ++        L  AAR  RY  ++  AK + A  ++TA
Sbjct: 65  AAFVRALCWEHGVACHTARVDVARIAKDRGWNLEDAARRLRYGFLTRTAKRVGADAVVTA 124

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV M+  R  A     L GM           + RP L   R  +R++L    
Sbjct: 125 HTQDDQAETVLMQLLRGAAH----LQGMPA-----RQGRVLRPLLEVPRSALRAYLRALG 175

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
               EDP+N D    R  VR  +    L A    +K        +    A    +     
Sbjct: 176 QDCLEDPTNADTSRTRAWVRHVLLP-TLAARAPHVKATLARHAALQRDQAAHFRRLAQGL 234

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
           ++   A  + +L  D  +    +       G
Sbjct: 235 IKDAGAEVRALLAQDVAVQRAAVAELLRCAG 265


>gi|296134924|ref|YP_003642166.1| tRNA(Ile)-lysidine synthetase [Thiomonas intermedia K12]
 gi|295795046|gb|ADG29836.1| tRNA(Ile)-lysidine synthetase [Thiomonas intermedia K12]
          Length = 350

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 137/322 (42%), Gaps = 16/322 (4%)

Query: 5   PIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            + ++R F            I +A SGG+DS  LL+A  ++     +G  +  A+ V+H 
Sbjct: 27  ALAALRRFASQNPGVAQAERIGIAFSGGADSTALLLAARTL-----WGGGRLCALHVNHG 81

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINAT 120
           L+ +A+   ++ +  C+ L +A++  + +        L   AREARY  +++ A+  N  
Sbjct: 82  LQTSAQLFAQHCAQACAALDVAYAEATLQVDVARGQSLEEVAREARYLALAKLAREQNCA 141

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++ A   DDQ+ET+ +   R    +G+         +       +RP L C   ++RS+
Sbjct: 142 VVLLAQHGDDQVETLLLALLRGAGPRGLAAM---PAQMQRHGCSFARPLLDCGAAELRSW 198

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAML 237
           L  + +S+ +DP N D  F R R+R  +  +      A    + +   L    +  +   
Sbjct: 199 LKSQAVSFLDDPMNADPAFRRSRIRHELVPVLARLEPAYRQTLGRSAALCAAADAQIQST 258

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER-VMLFLKS 296
             + L + ++        +  + +     +LR+     G ++       + R V+   + 
Sbjct: 259 AAQQLRLCLQPQGLDLAALRALGAVSASEVLRLWLRQNGQRLDRARTDELVRQVLRTGQG 318

Query: 297 GKRGCVSIGRVVIDRRANFLWI 318
             R  + +   ++ R+   L +
Sbjct: 319 AHRLELRLPGCILQRQGACLRL 340


>gi|257063279|ref|YP_003142951.1| tRNA(Ile)-lysidine synthetase [Slackia heliotrinireducens DSM
           20476]
 gi|256790932|gb|ACV21602.1| tRNA(Ile)-lysidine synthetase [Slackia heliotrinireducens DSM
           20476]
          Length = 361

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 127/360 (35%), Gaps = 43/360 (11%)

Query: 3   LSPIESVRFFV--RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++ I+ VR  +  RS+V   + +L+ VSGGSDS  L  A   +  +   G +    + V+
Sbjct: 5   MALIDRVRTLIDDRSMVRTGSPVLLMVSGGSDSTALAYAAAELRDEGRLGTVTM--LHVN 62

Query: 60  HCLRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARYAL----IS 111
           H LR  A D +  +   + + L I                  + A ARE RY      + 
Sbjct: 63  HKLRGEASDGDAAFTRRLSAHLGIPLFDCEIDVPALLANGGNMEATAREERYRAVREALE 122

Query: 112 EHAKTINATL----IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
                    L      T HT DD++E+ +MR+       G+        + +     I R
Sbjct: 123 STCSHTGYDLEDASAFTGHTADDRVESYFMRTIVGTGPGGLRAM---SHVSWVNGCRICR 179

Query: 168 PFLRCRREDIRSF--------LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           P L C R+++R +          +    W ED +N D    R  VR  +    +      
Sbjct: 180 PLLECSRDELREYIRSRPGAIADELGNLWREDATNGDTDHFRSYVRHELVPRAMERNPQL 239

Query: 220 MKKFQDLRVKVNNAVAMLIPKY----------LTVHMRSIIAISQDILNIDSTLLFYLLR 269
           +        ++ +   MLI +           L    R    +S +I      +   ++ 
Sbjct: 240 LATLTRTMNQIADEDDMLIARTKDLLVRFGVPLGSSPREGFIMSPEIGMEPKAMQRRVVY 299

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT-----RAVRN 324
              ++     +     S+E  +  + +        G + +    + L +      RA RN
Sbjct: 300 RLLSLMLPPTARIESASVEACVEAIGNHGYVANIQGDIAVSFNKHGLRLEPMAAFRARRN 359


>gi|149921066|ref|ZP_01909525.1| helix-turn-helix, Fis-type [Plesiocystis pacifica SIR-1]
 gi|149818070|gb|EDM77527.1| helix-turn-helix, Fis-type [Plesiocystis pacifica SIR-1]
          Length = 362

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/320 (23%), Positives = 119/320 (37%), Gaps = 24/320 (7%)

Query: 9   VRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           VR  + +L   +   +LVA SGG+DS+  L  L  +  +RS G +  S   VDH LR  +
Sbjct: 28  VRGALSALAEGSGRSLLVACSGGADSVATLGLLVLL--ERSEG-LTLSVGHVDHGLRPES 84

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            DE   V  +   L +   V   + ++   GL A AR AR   +   A+   A  I+ AH
Sbjct: 85  ADEAELVRALAEGLGLPCFVERAELAR-GPGLPARARAARRGALEAMAEQAGADAIVLAH 143

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T  DQ ET+ M + R     G+    + D           RP L   R   R       +
Sbjct: 144 TATDQAETMLMHATRGAGLVGLAAMPVLD-------GPWLRPVLDLTRMQTRELAELLEL 196

Query: 187 SWCEDPSNTDDRFERVRVRRFV-RDIDL--HALYLKMKKFQDLRVKVNNAVAMLI----- 238
            + +DP+N D    R  +R  V R +      + + M            AV +       
Sbjct: 197 PFVDDPTNEDREQLRTWLRHEVLRPLRATNPRVEVLMAGLAREARDAQEAVEVWAMREVD 256

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR---SMERVMLFLK 295
            +  ++   S      +   +   +   ++R    + G  +S    R   +ME+  + + 
Sbjct: 257 SRRTSLEPGSESWTLDEFDALPRAIRMRVMRRLCELAGADLSRLHRRTVAAMEQACVDVS 316

Query: 296 SGKRGCVSIGRVVIDRRANF 315
              R      R    R    
Sbjct: 317 EATRAGRGAPRPAPRRWQLH 336


>gi|260578435|ref|ZP_05846349.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734]
 gi|258603457|gb|EEW16720.1| cell cycle protein MesJ [Corynebacterium jeikeium ATCC 43734]
          Length = 351

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/319 (20%), Positives = 118/319 (36%), Gaps = 33/319 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + V +SGG+DS+ L+  L           +K  A+ VDH L+E +    R  ++    
Sbjct: 41  AGVAVGLSGGADSLALVHGLLRC-------GVKVHAVVVDHQLQEASAQVARQAAETAMS 93

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L  +  + + +      G    AR+ARY  +   A       ++ AHT DD  E + +  
Sbjct: 94  LGASAEIRTVEVEGLGEGP---ARQARYQALGTAAA---GRPLLVAHTADDDAEGLLIGL 147

Query: 140 QRDYAEK---GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            R    +   GM         +     W+ RP L C R +  +      ++W EDP N+ 
Sbjct: 148 VRGSGAEAIAGMRSVHTDHAAVDAGAAWLGRPLLNCTRAETEAECRAAGLNWWEDPHNSS 207

Query: 197 DRFERVRVRRFVRDIDLHALYLK----MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           D + R R+R  V      AL       M +   +  +    +  L  + L          
Sbjct: 208 DAYLRSRIRTRVLPYLQDALGEHIGANMARTARMLREDVELLDELARRELQAAEEGASLN 267

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI-------- 304
             ++    + L   + +   A   G ++     +++ +++  K      V          
Sbjct: 268 CTELQQQPAALRRRVFKQWLADKTGPLTSAHLNAIDALVIAWKGQGGAAVPWPQSPPTPG 327

Query: 305 -----GRVVIDRRANFLWI 318
                 R+V+ RR  +L +
Sbjct: 328 QQRRTHRLVVQRRDGYLQL 346


>gi|61217331|sp|Q7UA26|TILS_SYNPX RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 337

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/281 (20%), Positives = 101/281 (35%), Gaps = 13/281 (4%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           AVSGG DSM LL+ L  +           +    DH     +      +   C +  +  
Sbjct: 38  AVSGGQDSMALLVLLQELQ---RLHHWPLNIWHGDHGWHSGSAVIAADLRSWCQQRDLPI 94

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            V   +  +  T   A+AR  RY+ + + A+ + A ++ T HT  D+ ET+ ++  R   
Sbjct: 95  QVD--QAPQGSTASEASARHWRYSQLQQRAEELGADVV-TGHTASDRAETLLLQLARGTD 151

Query: 145 EKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
             G+G       +  D      + RP L   R D  +      +    DPSN    F R 
Sbjct: 152 LAGLGALRPVRPLFNDSPDGAQLRRPLLGFSRADTAAVCRDLQVPIWHDPSNQSPAFARN 211

Query: 203 RVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
           R+R  V  +          +M    +   ++ +    L    L     S     + +  +
Sbjct: 212 RIRAEVLPVLEQLHPGCSQRMANLAERTSQLRDTQQELSQLALQPLRTSTGLDRRRLGAL 271

Query: 260 DSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
             +    LL +  A  G  ++      +E++   L     G
Sbjct: 272 QPSTRRQLLVIWLAQQG--VTALNAALLEQLTDRLALSAAG 310


>gi|158334883|ref|YP_001516055.1| tRNA(Ile)-lysidine synthase [Acaryochloris marina MBIC11017]
 gi|158305124|gb|ABW26741.1| tRNA(Ile)-lysidine synthase [Acaryochloris marina MBIC11017]
          Length = 338

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 116/320 (36%), Gaps = 37/320 (11%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  I  VR     L     IL+A+SGG DS  LL  L  +     +   + +    DH  
Sbjct: 14  LHHILKVRQL---LPIQQRILIALSGGQDSFCLLQLLVDLQPKWGW---QLAIAHGDHRW 67

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              +     +V+ +  + ++ +     + +  +    AA R+ RY +++E A+     L+
Sbjct: 68  PLDSDANAHHVTQIARQYQLPYF---LRQATTELRSEAAGRQWRYQILTEIAEQEAYPLV 124

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           ++AHT  D+ ET+     R     G  L  +         + + RP L   R     F  
Sbjct: 125 VSAHTASDRAETLLYNLIRGSGTDG--LQALSWQRPLSDRVQLVRPLLDVARAQTGDFCR 182

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK--------------KFQDLRV 228
            RN+   +D  N +  + R R+R  V          +++               F +   
Sbjct: 183 HRNLPIWQDAMNQNLVYRRNRIRLEVLPHLKTHFNPQVETTLAHTAEILQGDVDFLEAET 242

Query: 229 KVNNAVAMLIPKYLTVHMRSII------AISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
           +   A+A+  P  +              A+    L +    L + LR +  +        
Sbjct: 243 QKLLAIALPSPPPVLSETEQYWGYINRDALQSAPLALQRRALRHFLRQAIDVSAN----- 297

Query: 283 GYRSMERVMLFLKSGKRGCV 302
            ++ +E++M  +K+      
Sbjct: 298 -FQQIEKLMALVKAPNHSRT 316


>gi|110597047|ref|ZP_01385336.1| tRNA(Ile)-lysidine synthetase-like [Chlorobium ferrooxidans DSM
           13031]
 gi|110341238|gb|EAT59703.1| tRNA(Ile)-lysidine synthetase-like [Chlorobium ferrooxidans DSM
           13031]
          Length = 337

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 23/248 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FLS I++ R   +       ILVA+SGG DSM +L    ++   R    ++ +    +  
Sbjct: 8   FLSQIKARRLVEQ----GDRILVALSGGPDSMAMLSLFTAL---RPVLHLQLAVAHCNFL 60

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
           LR   +  +  +V +   RL +   V  +      S+ +  L   AR  RY    +  + 
Sbjct: 61  LRGRESDGDEDFVREAALRLGMECFVERFDTRHHASQLKKSLEETARILRYGFFDKVLEE 120

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              + + TAH   D  ET+     R  +   +         +   N  I RP L   + +
Sbjct: 121 QGFSKVATAHHVSDNAETILFNLFRGASLPAL-------KGIRARNDRIIRPMLLLHKAE 173

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNN 232
           I+ +L ++ I+   D SN+ D ++R  +R  V  +      H L   +++  +   ++  
Sbjct: 174 IKGYLKEKGIASRIDSSNSSDDYDRNFIRNRVIPLIEERFAHKLMPSLQRVSEQAGELEE 233

Query: 233 AVAMLIPK 240
            + +    
Sbjct: 234 FLELYFEN 241


>gi|317153245|ref|YP_004121293.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2]
 gi|316943496|gb|ADU62547.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio aespoeensis Aspo-2]
          Length = 336

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 100/287 (34%), Gaps = 18/287 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG+DS  LL+ LH +         +  A  ++H LR  A D+ R+ + +C  L 
Sbjct: 43  LAVGLSGGADSTALLLCLHWLAVKNGG---RVVAAHLNHRLRPEADDDARWAASLCESLG 99

Query: 82  IAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +        V+   +    GL  A REARY L ++      A  I   H           
Sbjct: 100 VPCVAREADVAALAASRGMGLEEAGREARYTLFADVLAQHEAHFIALGHHL-----DDLG 154

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                   +G    G+   +  D    + RP L   +  +   L    +SW ED +N+D 
Sbjct: 155 EDLLLRLSRGTAWPGLSGMVGRDDGRRLLRPLLLTPKSTLTGLLTALGVSWREDATNSDP 214

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-VAMLIPKYLTVHMRSIIAISQDI 256
           R+ R R+R  V  +    L  +   F D   ++     A                +   +
Sbjct: 215 RWARNRIRSTVMPL----LLQENPNFLDAVARLWRVGSADRDYWDAQTATAGTTLLDATL 270

Query: 257 LNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCV 302
                 L   L + +    G GQ        ++R     + G     
Sbjct: 271 AGAHRALRLRLYKAALDSLGPGQALADTLFGLDRAWQDRRIGATFQF 317


>gi|57241883|ref|ZP_00369823.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57017075|gb|EAL53856.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 322

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 13/211 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+  L      L+A S GSDS  L   L           + F    +++  R+ +  E  
Sbjct: 6   FLEHL-RERKNLLAFSYGSDSTALFYLL-------ERENVIFDMALINYKTRQNSDLEEE 57

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               +  R      +      + +      AR+ RYA   +         ++ AH  +D 
Sbjct: 58  EARLLAKRFH--KQIFIQTAPRFKGNFEKNARDFRYAFFEKICIEEGYENLILAHQLNDL 115

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E   M+  +      M L GM        N  + RP L   +E I +FL +  + + +D
Sbjct: 116 FEWFLMQLSKGAGA--MELLGMSA-FEKRENYTLIRPLLNVTKEQILAFLRENKLKYFDD 172

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
            SN D +F+R  +R    D  L      ++K
Sbjct: 173 ESNKDLKFKRNFIREHFSDEFLRHFSKGVQK 203


>gi|224418853|ref|ZP_03656859.1| hypothetical protein HcanM9_06215 [Helicobacter canadensis MIT
           98-5491]
 gi|253828158|ref|ZP_04871043.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142371|ref|ZP_07804564.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511564|gb|EES90223.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131402|gb|EFR49019.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 329

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 31/310 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+  L   A  L+A SGG DS  L   L S         I F    VD+ +R+ +  E+ 
Sbjct: 8   FLEEL-KGAKNLLAFSGGLDSTALYFLLKSY-------GIAFDIAIVDYGIRQQSHLEIS 59

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               +C         +  K  K      A AR  RY   +      +   ++ AH  +D 
Sbjct: 60  RAKTLCFWDNKQCYTL--KAPKINKNFEANARAIRYDFFTSLVSQNSYQNLILAHQLNDN 117

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISW 188
           LE   M+  +  + + M +     ++ +  N    +I RP +   R  ++ +L    I +
Sbjct: 118 LEWFLMQFCKGTSIENMQIP--PKSLFWKQNQKTCYILRPMIFLPRITLQMYLQTHKIFY 175

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            ED SN D  ++R   R++  +         ++ FQ         +A    K     +  
Sbjct: 176 FEDSSNADTAYKRNYFRKYFAN-------PLIQNFQGGIQFSLELLAKEHSKTDLEDLGG 228

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV 308
                 + L+     L+Y+ + S  +             ++    L   +   V  G++ 
Sbjct: 229 FFVFKHNALS-----LYYIDKASKKLG----YCLSKIQKQQCQTHLTQQEFSIVLGGKIA 279

Query: 309 IDRRANFLWI 318
           +++  N + I
Sbjct: 280 LEKSQNQICI 289


>gi|224373408|ref|YP_002607780.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Nautilia
           profundicola AmH]
 gi|223589428|gb|ACM93164.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Nautilia
           profundicola AmH]
          Length = 317

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 13/183 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A S G DS  L   L           I F    V++  R+T+ +EV Y  ++      
Sbjct: 8   LLAFSAGVDSTALFFWLIE-------NNIPFDIAIVNYHTRKTSNEEVEYAKELAETYNK 60

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +      K        AR  RY    E  K      ++TAH  +D+ E   M+  + 
Sbjct: 61  KIYIKDCVLPKFS---EKEARICRYVFFEEIIKKHGYHTLITAHQLNDRFEWFLMQFSKG 117

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              K +   G  +   +     I RPF    R +I +FL +R I +  D SN D +++R 
Sbjct: 118 AGLKELIAMGEWEEREF---YKIYRPFYNISRNEIVTFLNERGIKYYTDESNFDKKYKRN 174

Query: 203 RVR 205
            +R
Sbjct: 175 FIR 177


>gi|261338173|ref|ZP_05966057.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093]
 gi|270276810|gb|EFA22664.1| tRNA(Ile)-lysidine synthase [Bifidobacterium gallicum DSM 20093]
          Length = 287

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 10/185 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILVA SGG DS+ L  A  +V +      ++  A+ VDH +++ + +     +  C+ L 
Sbjct: 47  ILVACSGGRDSLALAAAARTVCTSWG---LRCGAVIVDHSMQQGSAEVAARAAKQCADLG 103

Query: 82  IAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +   +V      PQT    G  AAAR+ RY  I+  A    A  ++ AHT +DQ ETV +
Sbjct: 104 LEPVIVERIVLDPQTMRQRGSEAAARQMRYETITRVAGRTGAEAVLLAHTRNDQAETVLI 163

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                    GM        I    ++ + RP L   R D         + + +DP+N + 
Sbjct: 164 NLLTSGGLDGMAGMPERTQIA---DVALLRPLLDLTRADTTQICESLGLEFWDDPTNGEF 220

Query: 198 RFERV 202
              R 
Sbjct: 221 LSARN 225


>gi|108758860|ref|YP_632533.1| tRNA(Ile)-lysidine synthetase [Myxococcus xanthus DK 1622]
 gi|108462740|gb|ABF87925.1| tRNA(Ile)-lysidine synthetase [Myxococcus xanthus DK 1622]
          Length = 451

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/332 (24%), Positives = 137/332 (41%), Gaps = 22/332 (6%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            + R  +    +L+AVSGG+DS  LL+    V        ++    S+DH LR  A +E 
Sbjct: 18  AYTRLGLEGGSVLLAVSGGADSTALLMGTVLVAERLR---LRVEVASLDHGLRPEAAEEA 74

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           R VS + +   +   V + +   P  G+ A AREARYA +          ++ TAHT  D
Sbjct: 75  RQVSVLAAARGLPCHVQALRL-HPGVGIEARAREARYAALEALRLERGLDVVATAHTATD 133

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET+ MR  R  A +G          +++    + RP L C RE++ +FL ++ +++  
Sbjct: 134 QAETLLMRLARGTALRGA-------VGIHEARPGLVRPLLSCTREEVVAFLAEQGVAYVT 186

Query: 191 DPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           DP NTD    R RVR  V          A+   +  F  +  +  + +A +         
Sbjct: 187 DPMNTDPVHFRTRVRLGVLPALSRAAGFAVEGHLAAFARVVAEDESLLASMADAAFDRLR 246

Query: 247 RSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
               A+    +  ++  L   +L    A     +       ++R +      + G  ++G
Sbjct: 247 LEDGALDAVGVRALEPALRRRVLARLVAGTEAAVDEATLARVQRAVA-----QGGTATLG 301

Query: 306 R-VVIDRRANFLWITRAVRNLPTLILYPEETT 336
           R  V+   +  +   R V + P   L  E   
Sbjct: 302 RGYVLRATSGRVRCVRQVPSTPPAELRLEHAG 333


>gi|303232429|ref|ZP_07319121.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae PB189-T1-4]
 gi|302481513|gb|EFL44581.1| tRNA(Ile)-lysidine synthetase [Atopobium vaginae PB189-T1-4]
          Length = 482

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 108/291 (37%), Gaps = 42/291 (14%)

Query: 26  VSGGSDSMGLLIALH----SVLSDRSFGKI---KFSAISVDHCLRETAKDEVR-YVSDVC 77
           VSGG+DS+ L +        +   R   +I   + + + V+H LR +A DE   YV  + 
Sbjct: 2   VSGGADSVALTVLACSRPLDLRDGRGPVRINPARLAILHVNHGLRGSAADEDESYVRLLA 61

Query: 78  SRLRIAHSVVSWKNSKP-----------QTGLMAAAREARYALISEHAKT--------IN 118
               I   V     ++             + + A  R+ RY   ++ A+           
Sbjct: 62  GHFHIPCYVEHVNVAQLAKKQAAAHRGASSNIEAVGRQVRYDCATKLARQLCTQTHTRYA 121

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I+TAHT +D+ ET  + + +     G+       + +      I RP L    E++ 
Sbjct: 122 DARIVTAHTANDRAETFLINATQGSGLAGL-------SSIPRKRQIIVRPLLDFTHEELC 174

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVN 231
             L +++I W ED +N D  + R  +R  V           +  +        D    + 
Sbjct: 175 DILSKQDIPWHEDETNKDTWYMRAYMRHAVLPRLQTKNINVVRNIAASCDILADEHAFLE 234

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISL 281
                 + +   V  R  IA+    L  +D  L   ++R++     G + L
Sbjct: 235 RLAHEELTRLTRVKTRYTIALCAGRLVRLDIALARRVVRLACLELFGDLRL 285


>gi|148241171|ref|YP_001226328.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. RCC307]
 gi|147849481|emb|CAK26975.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. RCC307]
          Length = 337

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 101/271 (37%), Gaps = 22/271 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             + +L+A+SGG DS+        +L  R     +      +H  R+ A    +++  V 
Sbjct: 32  QGSGLLIAISGGQDSL---ALTRLLLDLREQHHWQLQLWHGNHNWRQDAAANAQHLQQVA 88

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           ++  +  +V     ++P     AAAR+ RY  +   A+T +  L++T HT  D+ ET+  
Sbjct: 89  AQWGLPLTV---DCAEPAPKSEAAARQWRYERLQRQAETSSCPLVLTGHTATDRAETLLF 145

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R       GLS +  T      + + RP L   R D ++   Q  +    D +N D 
Sbjct: 146 NLIRGA--DLTGLSSLRQTRPLGAGITVVRPLLAFSRADTQACCEQLGLLVWHDITNADR 203

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           +F R R+R  V    +  L            +    +  L  ++  +   ++ AI  +  
Sbjct: 204 QFSRNRLRLDV----IPELEALNPGATQHLARAAQLLEELEGQHSALEALALEAIRSEPG 259

Query: 258 NIDSTLLF----------YLLRVSAAICGGQ 278
             D                LL         Q
Sbjct: 260 RADLNRQRWQEQPIKLQKRLLHRWVQQTSQQ 290


>gi|258567614|ref|XP_002584551.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237905997|gb|EEP80398.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 775

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 119/374 (31%), Gaps = 72/374 (19%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R   +P+ + +AVSGG DSM L      +  +     +K  A+ VDH  R+ + DE   V
Sbjct: 26  RKDGFPSRVALAVSGGPDSMALAHLCRKLTVEGYIPDLKVIALIVDHKSRKGSADEALRV 85

Query: 74  SDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +     + +   +++ K           +     AR+ RY  +     + N   ++  H 
Sbjct: 86  AGWIQEMGLTPEILTLKWPAEAKDPSKLSNFETLARKLRYQALGTACTSANIQTLLLGHH 145

Query: 128 FDDQLETVYMRSQRDYAEKGM-------------GLSGMCDT------------------ 156
            DD +ET  +R  + +   G+             GL G+  +                  
Sbjct: 146 RDDNIETGLLRLSQGHRRFGLAGFDCISPIPECHGLWGVSHSGDISSLETILTSRTPESK 205

Query: 157 -----------------------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
                                        +++ RPF    +  + +      + +  DP+
Sbjct: 206 AKPSNLAEHLDITGVSPQLNIAHFTASGGVYLLRPFRAFPKARLEATCRNAMVPFVVDPT 265

Query: 194 NTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQ--DLRVKVNNAVAMLIPKYLTVHMRSII 250
           N D     R  VR+ +   DL             D   ++   +  L+   + +      
Sbjct: 266 NADHTLTVRNTVRKLLASDDLPRALQSPPILALMDRTQRIKERLQELVDGLVKLIKVVNF 325

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLP-------GYRSMERVMLFLKSGKRGCVS 303
                 L +       L  + +A        P         +++  ++  + +G    +S
Sbjct: 326 DFRTGTLLLRLPSAKDLKGLESAYNDDSRGYPYVDSLEVRLKALRALIELVAAGSNVQIS 385

Query: 304 IGRVVIDRRANFLW 317
              ++  R A  +W
Sbjct: 386 QDGLL--RAAQMIW 397


>gi|254419185|ref|ZP_05032909.1| PP-loop family [Brevundimonas sp. BAL3]
 gi|196185362|gb|EDX80338.1| PP-loop family [Brevundimonas sp. BAL3]
          Length = 449

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 94/368 (25%), Positives = 145/368 (39%), Gaps = 36/368 (9%)

Query: 10  RFFVR-----SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           R F R     S   P  + +A+SGG DS+     L    +         +A+SVDH L  
Sbjct: 17  RVFARLDRRLSSDAPQPVALALSGGGDSI---ALLRLAAAWARARGRPLTALSVDHRLNP 73

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            + D  R+  +           + W   KP TGL AAAR AR+ LI+E A+ I A +++ 
Sbjct: 74  ASADWTRFAGEAARAAGADWRGLVWDGDKPATGLTAAARAARHRLIAEAARAIGARVVLF 133

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AHT DD  E   MR++     +    S           L + RP L  RRE +R++L  +
Sbjct: 134 AHTADDIAEADLMRAEGSTLGRVREWSP-SPVWPEGRGLMLLRPLLDERRETLRAWLAGQ 192

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
              W EDP+N D RF R R RR +                                    
Sbjct: 193 GAEWIEDPANADPRFGRSRARRALAGTVPDG---------------------AAAGRDRP 231

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
               I A     + I   +    L  +    GG  + P    ++R+M  L+ G+    ++
Sbjct: 232 SSEGITANHDGTVRIARDVRARGLAAALVCVGGGATPPRGDRLDRLMQRLQVGEDFAAAL 291

Query: 305 GRVVIDRRANFLWITRAV-----RNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSY 359
               ++     + + R       R  P L+L+P    VWDGR+ F+  S +   + P   
Sbjct: 292 CGARVEADGETILLMREAGELARRAPPPLLLHPGVEAVWDGRFAFR-ASGAGWSVAPARG 350

Query: 360 RKADVPSG 367
           R + + + 
Sbjct: 351 RLSALSAA 358


>gi|154149315|ref|YP_001406091.1| tRNA(Ile)-lysidine synthase [Campylobacter hominis ATCC BAA-381]
 gi|153805324|gb|ABS52331.1| tRNA(Ile)-lysidine synthase [Campylobacter hominis ATCC BAA-381]
          Length = 331

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 11/184 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++A S GSDS  L   L  +        +KF    V++  RE +  E+    ++C +  +
Sbjct: 22  ILAFSHGSDSTALFHTLLDL-------NLKFDVAFVNYKTRENSDLEMVCARELCEKNNL 74

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
               +               AR+ R++   +        +++TAH  +D+ E   M+  +
Sbjct: 75  KFHCLISPLKFNLNGNFENEARKIRWSFFEKLCVQNGYNVVITAHQLNDKFEWFLMQLSK 134

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                 +      + +    N  + RP L   +++I +FL   N+ +  D SN + +F+R
Sbjct: 135 GSGLVNLLS---PEMVEKRENFTVLRPLLNTGKDEILNFLRINNLKFFNDISNQNLKFKR 191

Query: 202 VRVR 205
             +R
Sbjct: 192 NFIR 195


>gi|159471209|ref|XP_001693749.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158283252|gb|EDP09003.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 329

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 95/252 (37%), Gaps = 11/252 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC-SRL 80
           +LVAVSGG DS+ LL  L  +    S+   +   +  DH  R  +     +V ++   RL
Sbjct: 24  VLVAVSGGQDSVCLLQLLADLRHLYSWR--RLGVVHCDHRWRTDSAANAAFVVELATQRL 81

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +    V  +          +ARE RY + S  A       ++TAHT  D+  T+ +   
Sbjct: 82  GLEAEDVHVEAR-----CERSAREWRYHVFSRVAAECGYGAVVTAHTSTDRR-TMLLNLL 135

Query: 141 RDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R     G+  LS           + + RP L+  RE+  +F+ Q  +    D +N  +  
Sbjct: 136 RGAGPSGLVALSRNRPLPPPPGPVRLVRPLLQFAREETLAFVQQAGLPHFHDSTNDHNEH 195

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R R+R  V          ++       ++V       +     +     + +S  +  +
Sbjct: 196 RRNRLRNEVMPQLRAGFNPRLDLALTRFMEVLEPEVEFVEDMAELAYGRALKLSA-LRKL 254

Query: 260 DSTLLFYLLRVS 271
              L   +L   
Sbjct: 255 PLALQRRVLHSW 266


>gi|329939449|ref|ZP_08288785.1| tRNA(Ile)-lysidine synthetase [Streptomyces griseoaurantiacus M045]
 gi|329301678|gb|EGG45572.1| tRNA(Ile)-lysidine synthetase [Streptomyces griseoaurantiacus M045]
          Length = 392

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 122/305 (40%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           I+   ++VDH L+  +      V++    L 
Sbjct: 93  VLVACSGGADSMALASALAFEAPRLG---IRAGGVTVDHGLQAGSDQRAEEVAERLRALG 149

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +        +     G  AAAR+ARYA +   A    AT ++  HT DDQ ETV +   R
Sbjct: 150 LHPVESIAVSVGRDGGPEAAARDARYAALDAAADRHGATAVLLGHTRDDQAETVLLGLAR 209

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFLR  R+  R+  + +++   +DP N D  + R
Sbjct: 210 GSGIR--SLSGMAAVS--GAAGRYRRPFLRLDRQTARTACMAQSLPVWDDPHNADPAYTR 265

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN--- 258
            R+R         AL   + +      +++   A  +  +     R +   S  +     
Sbjct: 266 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDAWAREAERGVRDESGRLECAKL 325

Query: 259 --IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVVIDRRAN 314
             +   +   +LR +    G        R +E +   + +  G+      GRVV+ R+  
Sbjct: 326 DVLPPAVRRRILRRAVLDAGAPGGSLFARHIEEIDRLVTAWRGQGAINLPGRVVVRRQGG 385

Query: 315 FLWIT 319
            L I 
Sbjct: 386 RLVIR 390


>gi|240047433|ref|YP_002960821.1| tRNA(Ile)-lysidine synthase [Mycoplasma conjunctivae HRC/581]
 gi|239985005|emb|CAT04998.1| tRNA(Ile)-lysidine synthase [Mycoplasma conjunctivae]
          Length = 295

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 14/194 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             L+A+SGG+DSM LL           F K       V++ LR+ +  E   V   C + 
Sbjct: 8   RFLLAISGGADSMYLLD---------RFKKFDIIVAHVNYNLRKQSILEQDLVEKYCQKN 58

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            I + ++  KN + ++   + AR  RY   S+  +  +   ++ AH  DD LET+ M+  
Sbjct: 59  NITYQILELKNIEYKSNFQSEARNLRYKFFSQVYQKYHCDYLVIAHHSDDFLETILMQKL 118

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           ++      G+    +       + I RP + +  +  I  +  + NI++ +D SN    +
Sbjct: 119 KNKIVNFWGIKAKINNF----GMQIWRPLIYKVDKNKIIKYNKKNNIAYFDDQSNFKPIY 174

Query: 200 ERVRVRRFVRDIDL 213
           +R ++R  ++    
Sbjct: 175 KRNQIRMDIQKWSW 188


>gi|31544871|ref|NP_853449.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(low)]
 gi|61216586|sp|Q7NAI9|TILS_MYCGA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|31541717|gb|AAP57017.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(low)]
 gi|284930947|gb|ADC30886.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. R(high)]
          Length = 287

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 115/295 (38%), Gaps = 26/295 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
               L+ VSGG DS+ LL        DR   +IK  A  +++  R TA  +   VSD C 
Sbjct: 6   KKQYLIGVSGGPDSIYLL--------DRYQDQIKV-ACHINYNKRPTALRDQLIVSDYCL 56

Query: 79  RLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + +I   ++S   S +        AR+ RY               + AH  DD LET  M
Sbjct: 57  KNKIPLEILSVSPSYQYHKNFQDQARKIRYDFFLSTGLKYQVDQCLIAHHKDDFLETAIM 116

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  ++      GL           +L I RP L   +++I S+L Q  I +  D SN   
Sbjct: 117 QYDKNQELLFYGLHQESSY----QSLKIFRPLLNLWKDEILSYLEQDKIVYGVDESNFLS 172

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            ++R ++R  +  +       ++  F +L  K       +   + +           + L
Sbjct: 173 TYQRNKIRTNLSKLSQEQKQARLDFFLELNKKNQVRYQSVKDFFSSW--------DCNYL 224

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVID 310
           ++ ++L +Y   +              +  E ++ FL  K+ KR  +  G  +I 
Sbjct: 225 DLINSLEYY--NLLYLWFSKNNIKYSKQKAENILSFLQKKNNKRFRLKAGVYLIK 277


>gi|298246393|ref|ZP_06970199.1| tRNA(Ile)-lysidine synthetase [Ktedonobacter racemifer DSM 44963]
 gi|297553874|gb|EFH87739.1| tRNA(Ile)-lysidine synthetase [Ktedonobacter racemifer DSM 44963]
          Length = 487

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 122/326 (37%), Gaps = 37/326 (11%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVL------SDRSFGKIKFSAISVDHCLRE-TAKDE 69
                ++VAVSGG+D           L      S + +  ++     ++H LRE  +  +
Sbjct: 17  ASGGRLVVAVSGGAD-----SLCLLHLLRSLCGSGKRYPTLQLHVAHLNHRLREPVSSQD 71

Query: 70  VRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
              V+++     +        +     +    L  AAREARY  +   A       I  A
Sbjct: 72  AAAVAELARTWGLPVTLGEEDIQVLAKRDHLSLEEAAREARYRFLRRVAA---GDPIAVA 128

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DDQ+ET+ +   R       G++ M        +  I RP L   R D  ++  Q  
Sbjct: 129 HHQDDQVETLVLHWIRGG-----GIASMSGLQPRQQD--IIRPLLIFTRADTLAYCAQHG 181

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLH-------ALYLKMKKFQDLRVKVNNAVAMLI 238
           ++  ED SN D R++R RVR  +  +           L    +  Q     +   V    
Sbjct: 182 LTPLEDASNADLRYQRNRVRHELLPLLEQLNPNICATLLRNSEVMQVDVAWIEVQVDQHW 241

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLL--RVSAAICGGQ-ISLPGYRSMERVMLFLK 295
              ++      IA+ +  L      L   L  R SA +C GQ      + ++    L  +
Sbjct: 242 SAVISHEETETIALRRSALLALPLSLQRHLWRRASANLCAGQSPFELRHYTLIEQALSQE 301

Query: 296 SGKRGCVSI-GRVVIDRRANFLWITR 320
           +G+   + + G++   R+   + + R
Sbjct: 302 TGEALTLHLPGQLHFWRQGEQVLLKR 327


>gi|257057522|ref|YP_003135354.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017]
 gi|256587394|gb|ACU98527.1| tRNA(Ile)-lysidine synthetase [Saccharomonospora viridis DSM 43017]
          Length = 324

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/330 (25%), Positives = 133/330 (40%), Gaps = 25/330 (7%)

Query: 2   FLSPIESVRFF-----VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
            L+   +VR F     V + +    + VAVSGG+DS+ L  A   V   R    +   A+
Sbjct: 1   MLTVRRAVRLFLSEPEVSAWLGSGQVFVAVSGGADSLALAEAAAHVGRRRG---LTVGAL 57

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
            VDH L+  + +   + +    RL +  + V         G  AAAR ARYA + EHA  
Sbjct: 58  VVDHGLQAGSAEVAEWAAQTALRLGVDTAKVLPVTVSGGGGPEAAARRARYAALREHA-- 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +  L++  HT DDQ ETV +   R    + +            L+    RP L   R  
Sbjct: 116 GDDALVLFGHTRDDQAETVLLGLGRGSGPRSLAGM-------RPLDPPWGRPLLDVPRSV 168

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVN 231
             +   +  +S   DP NTD RF RVRVR  V  +    L         +  + LR   +
Sbjct: 169 TAAACEELGVSPWHDPHNTDPRFRRVRVRHEVLPLLEDVLAGGVAEALARTARQLREDCD 228

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERV 290
              AM           S + +   ++ +  ++   +LR      G  +++    RS++ +
Sbjct: 229 ALDAMAAEVAEQARDGSELRVDV-LVRVPPSVRRRVLRTWLLEGGVRELTDAHLRSVDDL 287

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
           +   + G+ G    G V   R    L + R
Sbjct: 288 VGRWR-GQGGVFLPGDVEARRGHEKLVLNR 316


>gi|288921152|ref|ZP_06415440.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EUN1f]
 gi|288347461|gb|EFC81750.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EUN1f]
          Length = 591

 Score =  156 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 13/232 (5%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           VR  V  L   A +LVA SGG+DS+ L  A+  V   R+   ++   ++VDH   + ++ 
Sbjct: 13  VRDAVADLPPGALVLVACSGGADSLALAAAVAFVAPRRA---LRAGLLTVDHAWDDNSRA 69

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
               V+     L ++   +    + P      AAR+ R   +   A+ ++A  ++  HT 
Sbjct: 70  RAEDVAAQGRALGLSLVEI---LAAPSPRSEGAARDERRKALLAAARRLDAQAVLLGHTL 126

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV +R  R    +   LSGM       L+  I RP L  RR+  R       + +
Sbjct: 127 DDQAETVLLRLARGSGAR--SLSGMPA-----LDGLIRRPLLGLRRDQTRQACQFLGLPY 179

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            EDP+N D  F R R R  V  +    L   + +       +  A A  + +
Sbjct: 180 WEDPTNADPAFARARTRSRVLPVLEAELGPGIAQALARTADLLRADAEALDE 231


>gi|332706450|ref|ZP_08426511.1| tRNA Ile/lysidine synthetase [Lyngbya majuscula 3L]
 gi|332354334|gb|EGJ33813.1| tRNA Ile/lysidine synthetase [Lyngbya majuscula 3L]
          Length = 337

 Score =  156 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 98/301 (32%), Gaps = 31/301 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VR 71
           + L     +LVAVSGG      L     +L  +   K +      DH       DE    
Sbjct: 22  KLLPKNQQVLVAVSGGQ---DSLCLSKLLLDLQPKWKWQLGIAHCDHRW---TYDEGISL 75

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +V  +     +   +      K      +AAR+ RY  + + A+T     ++T HT  D+
Sbjct: 76  HVQQIAQSWGLPFHLRIAPEVKKS---ESAARQWRYQALIDIAQTQGYATVVTGHTKSDR 132

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV     R     G  L  +         + + RP L   R +   F  Q+ +S   D
Sbjct: 133 AETVLYNLIRGSGTDG--LQALTWERPLAPGVRLVRPLLDTSRSETLQFCEQQQLSIWVD 190

Query: 192 PSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             N D  + R R+R+ +              AL    +  +     + N    +  + + 
Sbjct: 191 AYNQDLNYARNRIRQELIPYLKTHFNPQVETALSQIAEILRADVEYLENTAEQIQKQAMA 250

Query: 244 VHMRSIIAISQDILNIDS--------TLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
           V        S     ++          L   ++R        Q     +  +E V   + 
Sbjct: 251 VPTVEEDPASNSPPRLNRLVLQQAPLALQRRVIRKFLQ--ENQTKALSFEQIEAVTGLIA 308

Query: 296 S 296
           +
Sbjct: 309 A 309


>gi|295098771|emb|CBK87860.1| tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine
           synthetase, C-terminal domain [Eubacterium cylindroides
           T2-87]
          Length = 380

 Score =  156 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 103/288 (35%), Gaps = 22/288 (7%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL  L+                 V++  R+TA  + + V D C    I   V      
Sbjct: 1   MALLDKLYK-------QGHTIIVAHVNYHKRDTANRDEKIVRDYCQERSIEVEV-QEPTF 52

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
             ++   + AR+ RY    E A   +   I  AH  DD LET   +  R+      GL  
Sbjct: 53  DNKSNFQSWARKVRYDFFFELATKNDTDQIYVAHHLDDHLETYLFQKSRNMLCDHYGLKS 112

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                     + I RP L   +  +  +  Q NI +  D SN  + + R ++R     I+
Sbjct: 113 ENIM----KGMKIIRPLLEETKAQLIEYCDQNNIEYGIDESNLGNDYTRNKIRH--SQIE 166

Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272
             +L  K++  ++++    N       +     ++        +L  +    +++L    
Sbjct: 167 KMSLLEKLRLNEEIQK--ENIKLKDKREKAASFLKGWNRSIDTLLKQEDA--WFILEYYL 222

Query: 273 AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
            +  G       + M+ ++  L+S     + I    ++     L+  +
Sbjct: 223 HLEIGNHY--SKKHMKSLIEQLQS--NCLLEIDGYYLESYEGMLYFKK 266


>gi|126437726|ref|YP_001073417.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS]
 gi|126237526|gb|ABO00927.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. JLS]
          Length = 320

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 95/276 (34%), Gaps = 22/276 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E  RF  R L       VA+SGG+DS+ L      +L          +A+ VDH L+  +
Sbjct: 13  EVARFARRHLAGTQRWCVALSGGADSLALTAVAADILPT--------TALIVDHGLQPDS 64

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                       RL    + V   +     G  AAAR ARY  +           ++  H
Sbjct: 65  AAVAETARAEALRLGCPDAHVLRVDVGTSGGPEAAARTARYGALRAA---HGGAPVLLGH 121

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R    + +    +CD   Y       RP L  RR    +   +  +
Sbjct: 122 TLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWY-------RPLLGVRRAATAAACTELGL 174

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
               DP N+D R+ R R+R  V  +    L   +                 +       +
Sbjct: 175 HPWVDPHNSDPRYTRSRLRTEVLPLLEDVLAGGVAAALARTAAALQDDNDTLDAQAGAAL 234

Query: 247 RSIIA----ISQDILNIDSTLLFYLLRVSAAICGGQ 278
             +       +  +  + + +   ++R      G +
Sbjct: 235 AEVTTGAGLDTARLAELPAAIRRRVIRSWLLAGGAR 270


>gi|317123757|ref|YP_004097869.1| tRNA(Ile)-lysidine synthetase [Intrasporangium calvum DSM 43043]
 gi|315587845|gb|ADU47142.1| tRNA(Ile)-lysidine synthetase [Intrasporangium calvum DSM 43043]
          Length = 333

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 121/328 (36%), Gaps = 21/328 (6%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR     +     +LVA SGG+DS   L    ++  +     ++  A+ VDH L+E + 
Sbjct: 14  AVRQHFADVPEGGLVLVACSGGTDS---LALAAALAFEAPRSGLRGGAVVVDHGLQEGSG 70

Query: 68  DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 +  C  L +    V+  +     +GL A AR ARY  I   A  + A+ ++  H
Sbjct: 71  AVAEQAAQTCRELGLSPVEVMVAEVRITGSGLEADARAARYKAIDAVADRVGASQVLLGH 130

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ E V +   R    + +    +             RP L   R    +      +
Sbjct: 131 TRDDQAEQVLLGLSRGSGARSLSGMPL-------RRGRFVRPLLALPRATTTAACEALGV 183

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAVAML---IPK 240
               DP N D  F RVR RR +  ++          + +  DL  +  + +  L     +
Sbjct: 184 QPWHDPHNEDPSFRRVRARRLLGALEGDLGPGFAAALARSADLLREDADYLESLAIRARE 243

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GK 298
            L           Q +  +   +   + R+ AA  G  IS      +E +   L S  G+
Sbjct: 244 ELPATAGDPGVDLQALAALPRAIRTRVWRILAAEAGAPISDVTAAHVESLDALLTSWHGQ 303

Query: 299 RGCVSIGRVVIDRRANFLWIT--RAVRN 324
                 G + + R  + +  +  R   +
Sbjct: 304 GPLHVPGGIAVARTGDAIRFSPIRETAD 331


>gi|283457230|ref|YP_003361800.1| putative ATPase [Rothia mucilaginosa DY-18]
 gi|283133215|dbj|BAI63980.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Rothia mucilaginosa DY-18]
          Length = 377

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/293 (23%), Positives = 110/293 (37%), Gaps = 26/293 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS   L            G ++  AI VDH L+E +       +   + L 
Sbjct: 53  LLVACSGGPDS---LALAAIAAHFARRGDVRVGAIIVDHDLQEDSAAVAAQTAQTLTDLG 109

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +        +      G   AAR ARY   ++  +   A  ++  HT DDQ ETV +   
Sbjct: 110 LHPVITEKVQVPVGNMGPEMAARTARYTAFTKAVEATGARAVLLGHTLDDQAETVLLGLS 169

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +   L+GM    + +  +   RPFL  RR D+ +      ++   DP+NTD+   
Sbjct: 170 RGSGTR--SLAGMPPVRV-EEGVTYLRPFLGLRRTDMLNICDAETLTPWIDPTNTDETLM 226

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-----------HMRSI 249
           R R+R  V       L   + +       V    A  + +   V            +R I
Sbjct: 227 RARIRHSVLPYLEEHLGGDVARSLARTASVAGPDAEYLDEQAQVAYEQALLPGGTAVRGI 286

Query: 250 IAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
                 +L+      +   L   +L  +    GG+   PG+  ++ +  F   
Sbjct: 287 EREDAVLLDRAQVAALHPALRLRVLAAACKAAGGEN--PGFERLQALDSFTAE 337


>gi|297201398|ref|ZP_06918795.1| tRNA(Ile)-lysidine synthase [Streptomyces sviceus ATCC 29083]
 gi|197713806|gb|EDY57840.1| tRNA(Ile)-lysidine synthase [Streptomyces sviceus ATCC 29083]
          Length = 350

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 119/306 (38%), Gaps = 12/306 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           ++   ++VDH L+  +      V      L 
Sbjct: 48  VLVACSGGADSMALASALAFEAPKLG---LRAGGVTVDHGLQPGSDLRAEEVVLRLRELG 104

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +     +      + G  AAAR+ARYA +   A+   A  ++  HT DDQ ETV +   R
Sbjct: 105 LDPVESTAVTVGREGGPEAAARDARYAALDAAAERQGAIAVLLGHTRDDQAETVLLGLAR 164

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               + +                  RPFL   R+  R   + +++   +DP NTD  + R
Sbjct: 165 GSGIRSLSGMAAVSGGPGAAR-RYRRPFLGLDRQTARKACMVQSLPVWDDPHNTDPAYTR 223

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-----IAISQDI 256
            R+R         AL   + +      +++   A  +  +      S+     +     +
Sbjct: 224 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWARQAEASVRDAAGLLECAKL 283

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRAN 314
             +   +   +LR  AAI  G  +   +      +  L +G   +G +++   V+ +R  
Sbjct: 284 YALPPAVRRRILR-QAAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGKVVAQRQG 342

Query: 315 FLWITR 320
              + R
Sbjct: 343 GRLVIR 348


>gi|11466394|ref|NP_038397.1| hypothetical chloroplast RF62 [Mesostigma viride]
 gi|12230820|sp|Q9MUR3|TILS_MESVI RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|7259537|gb|AAF43838.1|AF166114_50 hypothetical chloroplast RF62 [Mesostigma viride]
          Length = 310

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 106/262 (40%), Gaps = 13/262 (4%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     IL+A SGG DS+ L+  L  +    ++       ++ DH   ++++     ++ 
Sbjct: 18  LKKNDRILIAASGGQDSISLIKILVELQPQWNW---DLGIVNCDHSWNQSSRKGSSQIAQ 74

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +   L I    +    +  Q      ARE RY  I + A +    +I+TAH   D++ET 
Sbjct: 75  IAQLLNIDFYQI---VTCHQLINEEKAREWRYQKIEDIAFSNKYNVIVTAHNASDRIETF 131

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +    R  +    G+  +  T      + I RP L   R ++++F+ + ++    D SN 
Sbjct: 132 FFNLLRGTSI--TGVQSLLWTRSLSSGINIVRPLLNTTRFELKNFVKEIHLPLWPDTSNQ 189

Query: 196 DDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
              F+R R+R+     +R      +   + +F ++    +  +  +              
Sbjct: 190 SLFFKRNRIRKQLLPYLRKYFNPKVDKVIAQFAEIIHDESFYMENVTQIIEKQLFFGSKN 249

Query: 252 ISQDIL-NIDSTLLFYLLRVSA 272
           I Q+ + N+   +   +++   
Sbjct: 250 IQQEFIENLPIAIERRIIKKMI 271


>gi|119962110|ref|YP_945961.1| tRNA(Ile)-lysidine synthetase [Arthrobacter aurescens TC1]
 gi|119948969|gb|ABM07880.1| putative tRNA(Ile)-lysidine synthetase [Arthrobacter aurescens TC1]
          Length = 356

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/295 (23%), Positives = 112/295 (37%), Gaps = 20/295 (6%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDE 69
            + S  YP+ +LVA SGG DS+ L                  S   + VDH L+  + + 
Sbjct: 4   ALASAGYPSRVLVACSGGPDSLALAAVAAYFARRGHVDGHPVSVAGVVVDHQLQAGSAEV 63

Query: 70  VRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
               + V   L +    V + + +    G  AAAR+AR+A +   A  +    I+  HT 
Sbjct: 64  AARTASVLRELGLSPVEVRTVEVASTGFGPEAAARDARHAALESAADHLGCDAILLGHTL 123

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ E V +   R    + +                + RPFL  RRE+         +  
Sbjct: 124 DDQAEQVLLGLARGSGTRSLAGM-------RPARGRLLRPFLGLRREETLEICEVEELDP 176

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             DPSN D  F R R R  V  +    L   + +       +    A  +         S
Sbjct: 177 WHDPSNADPAFARSRTRVEVMPVLEEKLGPGVAESLARTAAILQQDADFLEDLANETYLS 236

Query: 249 II-------AISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
           ++        + +D +  + + L F ++  +AA  GGQ   PGY  ++     L+
Sbjct: 237 LVQRVDDGAWLPEDAVRELPAALRFRVIAKAAADVGGQQ--PGYGRLQAAEALLR 289


>gi|108796755|ref|YP_636527.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum]
 gi|122211731|sp|Q32RJ9|TILS_ZYGCR RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61393739|gb|AAX45881.1| hypothetical chloroplast RF62 [Zygnema circumcarinatum]
          Length = 420

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 124/329 (37%), Gaps = 57/329 (17%)

Query: 14  RSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +S+++P   IL+AVSGG DS+ LL  L+ +   RS    K   +  DH     +  +  +
Sbjct: 49  KSILHPYQRILIAVSGGQDSICLLNILNKL---RSTWHWKLGIVHCDHKWYLDSALQAIH 105

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           VS + + ++I         +         AR  RY LI   A   N ++I+T HT  D++
Sbjct: 106 VSRLAANMQIDLY---QALTTQSVNNEQLARNWRYELIRHVAICHNFSVIVTGHTASDRV 162

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTI----------------------------------L 158
           ET+     R     G+        +                                   
Sbjct: 163 ETLIYNLIRGSGISGLQSISWKRKLNSMLTIRMRSVEEQIILYSKHVKCYQNRENLLEDK 222

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL 218
            ++++++ RP L   R +++  +    +S   D SN +    R R+R  +        + 
Sbjct: 223 KNVDIYLIRPLLNVSRMELKHLVQNWKLSIWSDCSNQNISICRNRIRHQLLPYLRQYFHP 282

Query: 219 KM--------KKFQDLRVKVNNAVAMLIPKYLT-----VHMRSIIAISQDILN-IDSTLL 264
           K+        +      + +++    ++ K L+     ++ ++ + +  ++L  +   + 
Sbjct: 283 KIDYVLNSCTEVMYTETLYLDSIARYVLSKALSFISMPLNDQTCVKLDFELLRAVPLAIQ 342

Query: 265 FYLLRVSAAICGGQISLPGYRSMERVMLF 293
             +L+    +         ++ +E+V + 
Sbjct: 343 RRILKYFLDVITHTSV--SFKHVEQVRIA 369


>gi|260435057|ref|ZP_05789027.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 8109]
 gi|260412931|gb|EEX06227.1| tRNA(Ile)-lysidine synthase [Synechococcus sp. WH 8109]
          Length = 326

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/287 (20%), Positives = 111/287 (38%), Gaps = 10/287 (3%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + +L+AVSGG DSM     L  +           S    DH   + +      +S 
Sbjct: 21  LPQGSSLLLAVSGGQDSM---ALLALLQDLAPLHGWGLSLWHGDHGWHDNSSRITAELSS 77

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C + ++   V   + +  Q    A AR+ RY  +++  +   A ++ T HT  D+ ET+
Sbjct: 78  WCQQRQLPLQVD--QAAPGQVPSEAKARQWRYERLAQQGRQAGADVV-TGHTASDRAETM 134

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R      +        +  +   W+ RP L  +R D      +  +   EDPSN 
Sbjct: 135 LLQLARGSDLACLAALPSVRPLSPE-GPWLRRPLLHLQRHDTLQICQELALPIWEDPSNQ 193

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLIPKYLTVHMRSIIAIS 253
              F R R+R+ V  +         ++  DL  +V+        + +     +++   + 
Sbjct: 194 SPEFARNRIRQEVLPVLEALHPGSTQRMSDLAERVSQVRDSQKELSQMALNLLQTAAGLD 253

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRG 300
           +  L   S+    LL        G  +LP  R ++ +   L++   G
Sbjct: 254 RRGLGALSSASRRLLLAQWLQQQGVPTLPA-RQLDELSRRLENDGPG 299


>gi|328953064|ref|YP_004370398.1| tRNA(Ile)-lysidine synthase [Desulfobacca acetoxidans DSM 11109]
 gi|328453388|gb|AEB09217.1| tRNA(Ile)-lysidine synthase [Desulfobacca acetoxidans DSM 11109]
          Length = 470

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 116/322 (36%), Gaps = 23/322 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           R +     +LV VSGG DS      LH +        I       DH LR   ++D+  +
Sbjct: 17  RLIQPHDRVLVGVSGGPDST---ALLHLLHRLAPGWPISLGVAHFDHKLRGADSQDDAAW 73

Query: 73  VSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           V+ +   L++        V     + +  +  AAR+ R        +  +   +   HT 
Sbjct: 74  VAKLAEALKLPFFHGEGDVRRHAQQEKISVQMAARQLRLKFFHTIRQRHHYHKLALGHTA 133

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQLE  ++R  R    +G  L GM           I RP L   +  I ++L    + +
Sbjct: 134 DDQLELFFLRLLRGSGPEG--LKGMWPQSPTG----IIRPLLGTPKTRILAWLASCQLPF 187

Query: 189 CEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            ED SN    + R ++R  +             A+       Q+    ++   A+ + + 
Sbjct: 188 REDASNLSRHYRRNQLRLDLLPQLLSYNPRLPAAVEHLQALLQEQEEYLSQEAAINLDRL 247

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
            T            +L +   +   +LR++ A  G  ++   +  +E      +  +   
Sbjct: 248 KTAAAACPSLPVDGLLALPPAIQRRVLRLALAQAGVDLNRLTFDHVEAARKLAQRPQPAG 307

Query: 302 --VSIGRVVIDRRANFLWITRA 321
                G   + R+ + L  T+ 
Sbjct: 308 EISLPGGWRLVRQYSELQFTKE 329


>gi|300780433|ref|ZP_07090289.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium genitalium ATCC 33030]
 gi|300534543|gb|EFK55602.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium genitalium ATCC 33030]
          Length = 289

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 18/260 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DS        ++++  +       A+ VDH L+E +             L +
Sbjct: 12  VIGLSGGPDS-------LALVAAAAAEGCDMRAVVVDHGLQEGSASVAEQARAAAETLGV 64

Query: 83  AHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             ++V  +    P   + AAAREARY  +   A+   +  +  AHT DDQ ET+ + + R
Sbjct: 65  TATIVRVEVETAPGESVEAAAREARYQALFAEAEADGSD-VWVAHTLDDQAETLLLGALR 123

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                  G+S + +T     +  + RPFL+ RR +      +  +    DP N D  + R
Sbjct: 124 G---NPAGMSPVTETA----SGRLVRPFLQIRRAETVGACEELGLQPWHDPMNDDTAYRR 176

Query: 202 VRVRRFVRDIDLHALYLKMKK-FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           V VR+ +       +             ++    A++   Y          ++ D   I 
Sbjct: 177 VAVRKSIIPALGDLIGGDAAAPLAKTAERIAADNALIDEAYDLSPTNDCAELAADPAPIR 236

Query: 261 STLLFYLLR-VSAAICGGQI 279
              +   LR     + GGQ+
Sbjct: 237 QRRIRAWLRTYGVELGGGQV 256


>gi|268679075|ref|YP_003303506.1| tRNA(Ile)-lysidine synthetase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617106|gb|ACZ11471.1| tRNA(Ile)-lysidine synthetase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 331

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 72/208 (34%), Gaps = 16/208 (7%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+A SGG DS  L   LH          I F    V++  R  +++E  Y  ++
Sbjct: 15  LQHTKNLLAFSGGGDSTALFFLLH-------VKGISFDIAHVNYQTRPQSQEEEAYAKEL 67

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             R         +  +  +      AR  RY              ++ AH   DQLE   
Sbjct: 68  SLRFNKNLFT--FTCNLKERNFEHHARHVRYEFFESLIHEHGYETLIMAHHLGDQLEWFL 125

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           M+       KG GL  M     ++      I RP L   +  ++ FL +  I + ED SN
Sbjct: 126 MQLC-----KGAGLVEMIGMREWEKREAYTIVRPLLHVSKAHLKDFLEKEKIHFFEDESN 180

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKK 222
                 R   R       L A    + K
Sbjct: 181 ASFSHLRNTFRYRFATPLLEAYEAGIAK 208


>gi|226304109|ref|YP_002764067.1| tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4]
 gi|259533748|sp|C0ZNS6|TILS_RHOE4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226183224|dbj|BAH31328.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus erythropolis PR4]
          Length = 325

 Score =  155 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 107/279 (38%), Gaps = 21/279 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L+  ++VR +  +      ++VA+SGG+DS+ L  A  +             A+ VDH 
Sbjct: 9   LLALRQAVRAWTVAFEPRRRVVVALSGGADSLALTAAAVAETD-------SVDALIVDHR 61

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           L+  +    R  +D    L    + V   +      L AAAREARY+ + +    +    
Sbjct: 62  LQPGSDAVARSAADQALALGCRTATVLTVDVAEGGSLEAAAREARYSALRDARTDLP--- 118

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G  + GM        +    RP L  RR   R+  
Sbjct: 119 VLLGHTLDDQAETVLLGLSRGSG--GRSIQGMAA-----FDAPWGRPLLGIRRSVTRAAC 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPK 240
           +   I+  EDP N +  F RVR+R     +    L     +       ++      L   
Sbjct: 172 VDLGITPWEDPHNNNPEFTRVRLRHEALPLLEEILGGGVAEALARTATQLREDGEALDEY 231

Query: 241 YLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICG 276
              + +R+++        +    + +    LR      G
Sbjct: 232 AEALLLRAVVDGEVEVDTLAEAPTAIRRRALRAWLLQGG 270


>gi|159040239|ref|YP_001539492.1| tRNA(Ile)-lysidine synthetase [Salinispora arenicola CNS-205]
 gi|189035970|sp|A8M8I3|TILS_SALAI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|157919074|gb|ABW00502.1| tRNA(Ile)-lysidine synthetase [Salinispora arenicola CNS-205]
          Length = 333

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 119/312 (38%), Gaps = 14/312 (4%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + +L     +LVA SGG+     L    +              ++VDH L+E +      
Sbjct: 19  LTTLPDAGPVLVACSGGA---DSLALAAATAFVAPRLGRPAGLVTVDHGLQEGSARRATA 75

Query: 73  VSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           V D      +     +    S+   G  AAAREARY  ++E A  + A  ++T HT DDQ
Sbjct: 76  VVDWAHTAGLAPVEAIRVDVSERPGGPEAAAREARYQALTEAAGRLGAAALLTGHTRDDQ 135

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +   R    +G+       T  +     + RP L   RE  R+      ++   D
Sbjct: 136 AETVLLALARGAGPRGLAGM---PTRRWLGEALLLRPLLEVSREQTRAACTALGLAPWTD 192

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           P NTD  + R RVR  V    + AL   +        ++  A    + +  TV +  +  
Sbjct: 193 PHNTDPAYARARVRSEVLPALVRALGPGVLDNLARTARLVAADTAALDEQATVALDGVRH 252

Query: 252 ISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSI 304
               +       +   +   +L V A   G +     +R ++ +   +    G+      
Sbjct: 253 PDGGLCVGGLAGLAPAVRGRVLHVWARELGARPGALSHRHVDALEALVTGWRGQGAAYLP 312

Query: 305 GRVVIDRRANFL 316
           G + + RRA  L
Sbjct: 313 GGLRVFRRAGRL 324


>gi|225350936|ref|ZP_03741959.1| hypothetical protein BIFPSEUDO_02511 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158392|gb|EEG71634.1| hypothetical protein BIFPSEUDO_02511 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 364

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 31/278 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L        +      ++   I +DH L++ +    +  +D C  L 
Sbjct: 45  IMVACSGGRDSMALAAVAAKTCASLG---LRCGTIIIDHQLQQGSAGVAQTTADRCVALG 101

Query: 82  IAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +    V   +       G+ AAAREARY  I +     +A+ ++ AHT +DQ ETV +  
Sbjct: 102 LDPVRVRAIDVPDSRGIGVEAAAREARYHAIVDACS--DASAVLLAHTKNDQAETVIIGL 159

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD-- 197
            R        + GM  + + D  +   RP+L   RE+         ++W +DP+N  D  
Sbjct: 160 LRSSGLD--AVCGMNGSFIRD-GVRFLRPWLNMTREETTGICEDLRLAWWDDPTNGPDVG 216

Query: 198 ----------RF-ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLI 238
                      +  R R+R  +            +  L L  +  +D R  ++     + 
Sbjct: 217 NSGGNEPLPANYPLRSRIRHDLMPYLESFAGSDVVSKLALGARLAEDDRAYLDGVAQRVC 276

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
            + +TV+   II  ++ + + D  +   ++  S A  G
Sbjct: 277 EQGVTVNNGEIIIDARALQSQDIAIRRRVIVRSLAEAG 314


>gi|312212468|emb|CBX92551.1| hypothetical protein [Leptosphaeria maculans]
          Length = 758

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 37/264 (14%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RLRIA 83
           A+SGG DSM L+  L+     R  G     A  VDH  R  + +E  +V++    +L + 
Sbjct: 108 AISGGVDSMALMT-LYYRARKRRTGLPPAHAFIVDHNARPGSAEEAEWVAEQLRQKLDVP 166

Query: 84  HSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            +V+  +     +          AR  RY  + E  ++ N + ++ AH  DDQ ETV MR
Sbjct: 167 STVLRLEWPSDLDPSDHRRFETEARRLRYQALGESCRSHNISALLVAHHADDQAETVLMR 226

Query: 139 SQRDYAEKGM-------------GLSGMCDT---------------ILYDLNLWISRPFL 170
              +    G+             G+ G+  +               ++    + I RP L
Sbjct: 227 LANNRLRSGLQGIQGSEWIPECEGIYGLYHSGSPYTKIRPDNPSSLVVEQGGIQILRPLL 286

Query: 171 RCRREDIRSFLLQRNISWCEDPSNT-DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
              +  + +   +  + W ED +N       R  +R   +   L    L  K    + + 
Sbjct: 287 GFEKARLVATCKKACMPWVEDKTNQIRTLTARNAIRHIFQKHRLPK-ALSPKNLVKVSLH 345

Query: 230 VNNAVAMLIPKYLTVHMRSIIAIS 253
           +   V         +  +  + I+
Sbjct: 346 MQKRVEAHKAHAEQLFKKCNLLIN 369


>gi|290977196|ref|XP_002671324.1| predicted protein [Naegleria gruberi]
 gi|284084892|gb|EFC38580.1| predicted protein [Naegleria gruberi]
          Length = 598

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 138/345 (40%), Gaps = 25/345 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSV---LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            + VAVSGG DSMG  I +      L  +    ++  A+ VDH +RE ++ E+ YV +V 
Sbjct: 121 KVGVAVSGGGDSMGTAILVKKWADYLKQKKGIDMEVVALIVDHQIREESEHEMLYVHEVL 180

Query: 78  SR----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           ++      +      W +++ +      AR  R  ++S    +    L+++ H   D +E
Sbjct: 181 TKTVGYKNVFCFQCLWPDNQKKQ--QRIARLKRQLIMSSECVSQKIDLLISGHHKQDNIE 238

Query: 134 TVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T+  R        G+ G+  +    + D  + ++RP L     ++++   Q NI W EDP
Sbjct: 239 TMIHRVAFSSGINGLNGIPLIYSYCVADATIMLARPGLVFDCNELKAVCTQYNIKWVEDP 298

Query: 193 SNTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            N+D+R  R  +R  +       +     Y  +     +R  +         +Y+     
Sbjct: 299 KNSDEREFRSIIRSRLGLLYQSGVSPSNFYNFLLTLGAIRHIMLRESLNFYNRYVRFDDE 358

Query: 248 -SIIAISQDILNIDSTLLFY-LLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
                I    L   +  +    L         +       S++ V+ +L S KR   S+G
Sbjct: 359 LGFAGIYFYSLEKTAEFVASNALNSLIQYVTNREFPVTLGSIKNVVRYLPSTKR---SLG 415

Query: 306 RVVIDRRANFLWITR-----AVRNLPTLILYPEETTVWDGRYQFQ 345
             ++      L++ R       +   T I + ++  VWD R+  Q
Sbjct: 416 GCLLVPDKKVLYVIRDTGPLRRKKNHTTIRFTDKGIVWDNRFFIQ 460


>gi|284931702|gb|ADC31640.1| tRNA(Ile)-lysidine synthase [Mycoplasma gallisepticum str. F]
          Length = 287

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/295 (22%), Positives = 116/295 (39%), Gaps = 26/295 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
               L+ VSGG DS+ LL        DR   +IK  A  +++  R TA  +   VSD C 
Sbjct: 6   KKQYLIGVSGGPDSIYLL--------DRYQDQIKV-ACHINYNKRPTALHDQLIVSDYCL 56

Query: 79  RLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + +I   ++S   S +        AR+ RY               + AH  DD LET  M
Sbjct: 57  KNKIPLEILSVSPSYQYHKNFQDQARKIRYDFFLSTGLKYQVDQCLIAHHKDDFLETAIM 116

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
           +  ++  +   GL           +L I RP L   +++I S+L +  I +  D SN   
Sbjct: 117 QYDKNQEQLFYGLHQDSSY----QSLKIFRPLLNLWKDEILSYLEKDKIVYGVDESNFLL 172

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            ++R ++R  +  +       ++  F +L  K       +   + +           + L
Sbjct: 173 TYQRNKIRTNLSKLTQEQKQAQLDFFLELNKKNQVRYQSVKDFFSSW--------DCNYL 224

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRVVID 310
           ++ ++L +Y   +              +  E ++ FL  K+ KR  +  G  +I 
Sbjct: 225 DLINSLEYY--NLLYLWFSKNNIKYSKQKAENILSFLQKKNNKRFRLKAGVFLIK 277


>gi|42523405|ref|NP_968785.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100]
 gi|61216531|sp|Q6MLS8|TILS_BDEBA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|39575611|emb|CAE79778.1| putative cell cycle protein [Bdellovibrio bacteriovorus HD100]
          Length = 316

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 105/309 (33%), Gaps = 28/309 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYV 73
           +    ILVA+SGG+DS+ LL +L  V       K    A    H     +E  K+   + 
Sbjct: 23  LQDKKILVALSGGTDSVALLRSLTKV-----HKKNLLGACYFHHGEDSNQEYRKEAQEFC 77

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             +C +L I    +            A  RE RY  +    K     L+ T H  DD LE
Sbjct: 78  EKLCKKLEIEFYPLRASQLAKS---EAEYRELRYEALDRLKKEQGFELVATGHHRDDLLE 134

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  +R  R    +G     +       L   + RP L   +++++ +L +  +   EDP+
Sbjct: 135 TRLIRLIRGTGAQGFAAMHV-------LRDGLFRPLLEISKKELKKYLREERLRSFEDPT 187

Query: 194 NTDDRFERVRVRRF-VRDIDLHALYLKMKKFQDLRVKVNNAVA----MLIPKYLTVHMRS 248
           N      R  +R   ++ ++  A        + L              L+ +      + 
Sbjct: 188 NKALDPLRNWLREEWLKSLERRARGSTAALARSLETIAQEIENRPWGDLLGQNEAYKTQG 247

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL-KSGKRGCVSIGRV 307
           +       L +       LL       G +        +E +   L KS K     +   
Sbjct: 248 LRRSF--YLTLSPFEQKRLLAQYLFSLGKRDF--SQSHLEEIQKRLDKSQKVITFKVAGC 303

Query: 308 VIDRRANFL 316
             +  A  +
Sbjct: 304 QWEVNAEQI 312


>gi|284034335|ref|YP_003384266.1| tRNA(Ile)-lysidine synthetase [Kribbella flavida DSM 17836]
 gi|283813628|gb|ADB35467.1| tRNA(Ile)-lysidine synthetase [Kribbella flavida DSM 17836]
          Length = 349

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 117/328 (35%), Gaps = 24/328 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRE 64
           E+VR  +R L     +LVA SGG+          +        K++  A  + VDH L+ 
Sbjct: 32  EAVRAALRELPADTTVLVACSGGA-----DSLALAAAIAFEAPKLRLRAGAVIVDHGLQA 86

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +       +D C  L +    V       + G   AAR ARY  +   A    A +++ 
Sbjct: 87  DSAHAAAIAADQCRSLGLDPVEVRAVEVGSEGGPEGAARAARYDALRAAADQFGADVVLL 146

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AHT DDQ ETV +   R    +   L+GM           + RP L   R    +  +  
Sbjct: 147 AHTRDDQAETVLLGLARGSGAR--SLAGMAPVA-----GLLRRPLLEVPRASTAAACIAS 199

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLT 243
            +    DP N D ++ RVRVR  V  +   AL   + +        +      L      
Sbjct: 200 GLRPWHDPHNDDPQYRRVRVRHEVLPVLEEALGPGVTEALARTAGLLRADADALDALAAD 259

Query: 244 VHMRSIIAISQDILN-------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
           +   ++     ++L            +    LR +A   G   +      +  +  F+  
Sbjct: 260 LAETAVRRTDDEVLCDIGMLEAEPEAIRTRALRQAALEAGCHATDLTAGHVAAIDAFVTG 319

Query: 297 --GKRGCVSIGRVVIDRRANFLWITRAV 322
             G+R       V   RR  F+ +   V
Sbjct: 320 WRGQRWIDLPQGVRAMRRGGFIHLKPRV 347


>gi|206901988|ref|YP_002250586.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Dictyoglomus
           thermophilum H-6-12]
 gi|206741091|gb|ACI20149.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Dictyoglomus
           thermophilum H-6-12]
          Length = 455

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 139/372 (37%), Gaps = 72/372 (19%)

Query: 3   LSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           L  IE  V  F++S   +     I+++VSGGSDS+ L   L+++ S      +    + +
Sbjct: 8   LDYIEKKVLDFIKSESLISQGDSIILSVSGGSDSIALSEILYNLSS---ILNLNLYIVYI 64

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH +R     E   + D  +   I +S +    +          RE RY  + + ++ I 
Sbjct: 65  DHHVRSNTYIEKEIIKDYATSRSIPYSFLDIYTTDFT---EKTLREERYKALIKFSEKIK 121

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I   HT DDQ+ET+ M        KG G+ G+C       N    RP +   +E+I 
Sbjct: 122 FNKIALGHTLDDQIETIIM-----SFFKGYGIEGLCGIPTKRDN--FIRPIIILSKEEIL 174

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD---------------------IDLHALY 217
            +  ++N+ + +D +N      R R+R  +                       I+   L 
Sbjct: 175 EYCKRKNLKYVDDFTNLLPITLRNRIRYQLIPFLKENIPQFPQSIISQSVILSIENDLLE 234

Query: 218 LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-----NIDSTLLFYLLRVSA 272
              KK+ D   + NN + +    +  +H    I + ++I       + +  +FY+LR  +
Sbjct: 235 KLSKKYFDGLKRSNNVIEIENEGWKLLHDAIKIRVLKEIFKNFNEELSNEAIFYILREMS 294

Query: 273 AICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRN-------L 325
            + G                         + IG   I      ++I +  ++       +
Sbjct: 295 IMEG----------------------SKTLEIGNTEIYLYNQKIYIYKKEKHEFIIILPI 332

Query: 326 PTLILYPEETTV 337
           P  +  P    +
Sbjct: 333 PGEVKLPTGEIL 344


>gi|212716399|ref|ZP_03324527.1| hypothetical protein BIFCAT_01322 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660652|gb|EEB21227.1| hypothetical protein BIFCAT_01322 [Bifidobacterium catenulatum DSM
           16992]
          Length = 364

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 31/278 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L        +      ++   I +DH L++ +    +  +D C  L 
Sbjct: 45  IMVACSGGRDSMALAAVAAKTCASLG---LRCGTIIIDHQLQQGSAGVAQTTADRCVALG 101

Query: 82  IAHSVVSWKN--SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +    V   +       G+ AAAREARY  I +     +A+ ++ AHT +DQ ETV +  
Sbjct: 102 LDPVRVRAIDVPDSRGIGVEAAAREARYHAIVDACS--DASAVLLAHTKNDQAETVIIGL 159

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD-- 197
            R        + GM  + + D  +   RP+L   RE+         ++W +DP+N  D  
Sbjct: 160 LRSSGLD--AVCGMNGSFIRD-GVRFLRPWLNMTREETTGICEDLRLAWWDDPTNGPDVG 216

Query: 198 ----------RF-ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLI 238
                      +  R R+R  +            +  L L  +  +D R  ++     + 
Sbjct: 217 NSGGNEPLPANYPLRSRIRHDLMPYLESFAGSDVVSKLALGARLAEDDRAYLDGVAQRVC 276

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
            + +TV+   II  ++ + + D  +   ++  S A  G
Sbjct: 277 EQGVTVNNGEIIIDARALQSQDIAIRRRVIVRSLAEAG 314


>gi|318061598|ref|ZP_07980319.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. SA3_actG]
          Length = 304

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 126/306 (41%), Gaps = 16/306 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           I+   ++VDH L+E +      V+   + LR
Sbjct: 5   VLVACSGGADSMALASALAFEAPRLG---IRAGGVTVDHRLQEGSGRRAAEVAARLTALR 61

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +        +     G  AAAREARYA +   A+   A  I+  HT DDQ ETV +   R
Sbjct: 62  LTPVEAVAVDVGRAGGPEAAAREARYAALDAVAEKHGAAAILLGHTRDDQAETVLLGLAR 121

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM +  +        RPFLR  R+  R   + +++   +DP NTD  + R
Sbjct: 122 GSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTARKACMVQSLPVWDDPHNTDPAYTR 177

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-----TVHMRSIIAISQDI 256
            R+R         +L   + +      +++   A  +  +      TV           +
Sbjct: 178 SRLRHEGLPALEKSLGKGVVEALARTAQLSRDDADALDAWAARAAGTVRDEHGALDCAGL 237

Query: 257 LNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
             + + +   +LR +       GG +       ++R++   + G+R     G+V   R  
Sbjct: 238 YALPAAVRRRVLRAALLDAGAPGGALFAAHIEEVDRLITAWR-GQRALNLPGKVEARRLG 296

Query: 314 NFLWIT 319
             L I 
Sbjct: 297 GRLVIR 302


>gi|170738632|ref|YP_001767287.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46]
 gi|226695542|sp|B0UGN1|TILS_METS4 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|168192906|gb|ACA14853.1| tRNA(Ile)-lysidine synthetase [Methylobacterium sp. 4-46]
          Length = 344

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 125/311 (40%), Gaps = 21/311 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG DS  L+    ++       ++     +VDH LR  + +E   V+ +  RL + 
Sbjct: 32  LAVSGGPDSTALMGCAAAL-----PPRVPVLVATVDHGLRPESGEEAAGVAALAGRLGLP 86

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
           H +++W+  KP+T L  AAR ARY L+   A+   A  I+TAHT DDQ ETV MR     
Sbjct: 87  HRILTWRGEKPRTRLQEAARAARYDLLLGLAREAGAGAILTAHTLDDQAETVLMRLCAGS 146

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
              G+        +   L      PFL   +  + +        +  DP N   RF R R
Sbjct: 147 GPAGLAGIAPARRLGGLLLGR---PFLDLPKARLVATCAAAGWPFAVDPGNAAARFARAR 203

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM--------RSIIAISQD 255
           +RR +  +    L          R++ N A      +     +        R  +  +  
Sbjct: 204 LRRVMPLLAAEGLTPARLARLAARLRRNEAALAAAAEAARPSLAAAPAGPGRLALDAAGL 263

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSME-----RVMLFLKSGKRGCVSIGRVVID 310
               ++  L  L    AA+  G+        +E     R++  + +G    +++G  ++D
Sbjct: 264 AALPEAVALRVLADAIAALRAGERRPERLERLEEALFGRILPAIAAGTPLRLTLGGALLD 323

Query: 311 RRANFLWITRA 321
                L +   
Sbjct: 324 LAGGRLLLAPE 334


>gi|302553169|ref|ZP_07305511.1| hypoxanthine phosphoribosyltransferase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470787|gb|EFL33880.1| hypoxanthine phosphoribosyltransferase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 358

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 118/305 (38%), Gaps = 13/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           I+   ++VDH L+  +      V      L 
Sbjct: 59  VLVACSGGADSMALASALAFEAPRLG---IRAGGVTVDHGLQAGSDVRAAEVVLRLRELG 115

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +              G  AAAR+ARYA +   A+   AT ++  HT DDQ ETV +   R
Sbjct: 116 LDPVDSVTVTVGRSGGPEAAARDARYAALDTAAERHGATAVLLGHTRDDQAETVLLGLAR 175

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM        +    RPFL   R+  R   + +++   +DP N D  + R
Sbjct: 176 GSGIR--SLSGMAAVS--GADGRYRRPFLELDRQTARKACMVQSLPVWDDPHNADPAYTR 231

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-----IAISQDI 256
            R+R         AL   + +      +++   A  +  +       +     +     +
Sbjct: 232 SRLRHEGLPALEKALGKGVVEALARTARLSRDDADALDSWADQAEAGVRDAAGLLECAKL 291

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRGCVSIGRVVIDRRANF 315
             +   +   +LR +A   G        R +E V   +     +G +++   V+ RR   
Sbjct: 292 YALPPAVRRRVLRRAAIAAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGKVVARRQGG 351

Query: 316 LWITR 320
             + R
Sbjct: 352 RLVIR 356


>gi|300790558|ref|YP_003770849.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32]
 gi|299800072|gb|ADJ50447.1| cell cycle protein MesJ [Amycolatopsis mediterranei U32]
          Length = 319

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/312 (21%), Positives = 119/312 (38%), Gaps = 22/312 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+ +L  P  + VAVSGG+DS+ L  A   V   R        A+ VDH L+E +     
Sbjct: 16  FLETLEAPPELCVAVSGGADSLALAEAAAYVGHHRGHV---VRALVVDHGLQEGSAKIAA 72

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +     L +  + V   +     G  AAAR+ARY +++ H       L++  HT DDQ
Sbjct: 73  DAAAAAKALGVDEAEVRRADVTGAGGPEAAARKARYRVLAGH------DLVLLGHTLDDQ 126

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +   R    + +             +    RP L   R   R+   +  +   +D
Sbjct: 127 AETVLLGLGRGSGPRSVAGM-------RPHDPPWGRPLLAVGRATTRAACAELGVEPWDD 179

Query: 192 PSNTDDRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N + RF RVR+R  V  +    L+            +++ +N     + + +      
Sbjct: 180 PHNAEPRFTRVRLRTEVLPLLEDVLNGGVAAALARTAAQLRDDNEALDTLAEEIFTRAGG 239

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCVSIGR 306
              +    L  + + +   +     +      L     R+++ ++   + G+ G    G 
Sbjct: 240 PDGLDVATLAPEPSAVRRRVLRRWLLASDVRELTDAHLRAVDALVARWR-GQGGVWLPGN 298

Query: 307 VVIDRRANFLWI 318
           +   R    L +
Sbjct: 299 LEARRAHGRLCV 310


>gi|319409313|emb|CBI82957.1| tRNA(Ile)-lysidine synthase [Bartonella schoenbuchensis R1]
          Length = 518

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 5/214 (2%)

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207
            GLS +    L    + + RP L  +R+ +R++L  R I W +DP+N D RFERVRVR  
Sbjct: 202 RGLSCIAREALLRRKVRLIRPLLGIKRDSLRAYLRLRGIEWIDDPTNDDLRFERVRVRHS 261

Query: 208 VRDIDLHALYLKMKKFQDLRVKVNNAVAMLI--PKYLTVHMRSIIAISQDILNIDSTLLF 265
           +   D   +  K+ +    R +    +A LI     +  + R  I   +  L       F
Sbjct: 262 IHFKDFSEVAQKVNEAALKRRQYAQMIADLILALDIVVEYGRCFIKRPEPFLCRHPGFPF 321

Query: 266 YLLRVSAAICGGQISLPGYRSMERV--MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323
            ++ + A + GG   L   + +  +   L L S ++   ++   +I+     +   R  R
Sbjct: 322 -VVGLFAVLMGGSPYLLASQKLSALNQKLCLHSLEKKRFTLAGSLIEYGQKGIAFWREAR 380

Query: 324 NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           N+   I+ P +T +WDGRYQ  N     +++   
Sbjct: 381 NIQEAIILPGQTFLWDGRYQITNHERDALKVRAA 414



 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 1/117 (0%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A SGG DS+ LL  L            +   ++VDH LRE +  E + V+++C   +I H
Sbjct: 2   AASGGGDSLALLFLLKDYFKTL-LSPPEIIVVTVDHQLREESACEAQKVAEICRAYQIKH 60

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            +V W+ +KP+T +   AR ARY L+ + A+   ATLIMT HT +DQ+ET YMR QR
Sbjct: 61  VIVRWEGTKPKTDISQKARVARYDLLFQEAEKQGATLIMTGHTLNDQVETYYMRCQR 117


>gi|206896469|ref|YP_002247248.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739086|gb|ACI18164.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 314

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 20/244 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++AVSGG DSM LL                    +++H +R  A ++V+ V      L 
Sbjct: 22  IVLAVSGGKDSMVLLHLAKRF---EHHLPNNVVVATLNHGIRRDALEDVKLVVQCAQNLE 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
               V+    S          R  R A + +    + A  I TAH  DD +ET+ +R  R
Sbjct: 79  FP--VIVGSLSPKSFCDENTLRSHRRAFLLDVMDQVKADRIWTAHHADDAVETMVLRLGR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                G GL G     LYD     ++P L    EDI  F  +  + + ED +N    +ER
Sbjct: 137 -----GAGLMGATSPKLYDD--PWAKPLLTVFSEDIEEFRRRFGVPFREDSTNLLTDYER 189

Query: 202 VRVRRFVRDIDLHALYLKMKK--------FQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
            ++R  +       L   ++K            R  V      L+ +     +  ++ + 
Sbjct: 190 NKIRLELIPFWSELLGYDVRKTLFSSLTSMSVFREFVEEQGLCLLDQLTVERVPKMLKLR 249

Query: 254 QDIL 257
           +   
Sbjct: 250 RKAF 253


>gi|294055282|ref|YP_003548940.1| tRNA(Ile)-lysidine synthetase [Coraliomargarita akajimensis DSM
           45221]
 gi|293614615|gb|ADE54770.1| tRNA(Ile)-lysidine synthetase [Coraliomargarita akajimensis DSM
           45221]
          Length = 483

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 104/301 (34%), Gaps = 15/301 (4%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSR 79
            +LVA SGG+DS+ LL  L    ++     ++      +H  R   + ++ R+V  +   
Sbjct: 38  RVLVACSGGADSVFLLGIL---WANAELLGVELVVAHYNHRWRGSESDEDARFVEVMAKT 94

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L   +   + +  K        AR  R   +   A   N   I   H   D LET   R 
Sbjct: 95  LGCTYLTET-RPEKEAAFTETTARALRLDFLRRAATEANCDCIALGHQQGDILETQLQRI 153

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    +G  L+       ++      RP L  R  D+R  +    + WCED SN D   
Sbjct: 154 ARGSGSEG--LAAPRPIHRFERYPPHVRPLLNMRSGDVRMAVAACGLPWCEDSSNDDLSI 211

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII----AISQD 255
            R  +RR      + A+   +        ++    A  + +++       +     +S+ 
Sbjct: 212 PRNALRRKWIPGLVDAVGRDVSTAAARTRQLLEEDADALEQFMRASFSREVLAADRLSRT 271

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            L      L    R  +A  G    +      +++ ++  + S +            R  
Sbjct: 272 RLRASPRALSR--RALSAWLGNHGLMDSLSAAALDNLLDTVYSAQSESRQSAGEQFIRIR 329

Query: 314 N 314
            
Sbjct: 330 E 330


>gi|32266754|ref|NP_860786.1| hypothetical protein HH1255 [Helicobacter hepaticus ATCC 51449]
 gi|61216602|sp|Q7VGR5|TILS_HELHP RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|32262806|gb|AAP77852.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 423

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 84/241 (34%), Gaps = 13/241 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+  S G DS  L   L          +I F    V +  R  A DEV Y  ++ +    
Sbjct: 39  LLGFSSGVDSTALFFLLLEC-------EIPFDIAIVHYHTRLQADDEVAYAKELAATYNK 91

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V             + AR  R+          + T ++ AH  +D+LE + M+  + 
Sbjct: 92  LCFVAH--APHFNANFESNARSFRFDFFQSLIIKHHYTHLLLAHQLNDRLEWLLMQLTKG 149

Query: 143 YAEKGMGLSGMCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               G  L    +   YD    N  I RP     + ++  F  +R I + ED SN D  F
Sbjct: 150 AGL-GNLLGFADERYNYDKSLNNYTIVRPLESIPKNELYRFCKERGIKYFEDSSNQDKTF 208

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            R   R    D  ++     + +      +   ++  ++           + I + I NI
Sbjct: 209 RRNYFRYEFCDKLVNEFSAGIARSLSYLQRDRQSLENMLYADTLELESLKMQILRQIHNI 268

Query: 260 D 260
            
Sbjct: 269 S 269


>gi|288925835|ref|ZP_06419766.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella buccae
           D17]
 gi|288337490|gb|EFC75845.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Prevotella buccae
           D17]
          Length = 430

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 19/207 (9%)

Query: 50  KIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAARE 104
                A   +  LR E +K +  +   +C+   I      +   +     +  +  AAR 
Sbjct: 7   GYSVEAAHCNFNLRGEESKRDEDFCVSLCASRGIKLHRAHFDTFEYAHLHKVSIEMAARN 66

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            RY    +    I A  I  AH  +D +ET+ +   R    +G  L+GM        N +
Sbjct: 67  LRYHYFDQLRLAIGAKGICVAHHLNDNVETLLLNLIRGTGIQG--LTGMAS-----RNGF 119

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALY 217
           + RP L  R E+IR +L   N ++  D +N +D   R ++R  V           +  + 
Sbjct: 120 VLRPLLDVRHEEIREYLHSINQAFVIDSTNLEDDVLRNKIRLNVIPMLEGLNPAVVDNIA 179

Query: 218 LKMKKFQDLRVKVNNAVAMLIPKYLTV 244
             +    D +V +++     +   + V
Sbjct: 180 KTIHNLVDAKVVLDDVTKQFMSHGVAV 206


>gi|11465849|ref|NP_053993.1| hypothetical protein PopuCp198 [Porphyra purpurea]
 gi|1723412|sp|P51383|TILS_PORPU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1276849|gb|AAC08269.1| ORF327 [Porphyra purpurea]
          Length = 327

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/293 (22%), Positives = 113/293 (38%), Gaps = 18/293 (6%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG DS+ L+  L+ +     F + + + I  DH  R  +    + V          
Sbjct: 29  VAFSGGQDSLTLVKLLYDL---NPFYRWRITLIHFDHRWRWDSMLASKQVFSFARYYNFP 85

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
                  +         A+R+ RY  + + A   N T I+ AHT  D  ET+     R  
Sbjct: 86  LYYFECPDY---LNTEEASRKWRYTTLIDLAVKNNFTKILLAHTATDSSETLLSNLFRGT 142

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
           +  G+   G   +     +++I RP L   R +   F  +  +    D SN D    R R
Sbjct: 143 SLDGLASIGW--SCQLAQSVYIVRPLLNFYRFETSWFCRKYYLPIWVDRSNYDYIMFRNR 200

Query: 204 VRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
           +R+ +           + ++   L   V      L  + L ++    I I QD++ I+ T
Sbjct: 201 LRQELVPYIKSYFQPNLEERCYSLSSLVKYDTDFLEQEALRIY---FILIHQDLIAINHT 257

Query: 263 LLFYL-LRVSAAI-----CGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVI 309
            L  L L V + I            P  R +E V++F+K      +++   ++
Sbjct: 258 ALRLLHLSVQSRIFKIFFIANLNFNPNSRQIEDVIIFIKQNILSQINMNNYIL 310


>gi|187479043|ref|YP_787067.1| tRNAIle-lysidine synthetase ( cell cycle protein) [Bordetella avium
           197N]
 gi|115423629|emb|CAJ50169.1| tRNAIle-lysidine synthetase (putative cell cycle protein)
           [Bordetella avium 197N]
          Length = 341

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 121/334 (36%), Gaps = 32/334 (9%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           VR  +  L   A + +A+S G+DS  L +A   +   R        A+ V H L+  A +
Sbjct: 18  VRATLARLPSQAPVALALSAGADSAMLAVAARLLAPQR-----PLLALHVHHGLQAQADE 72

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             +    +   L +   +   K     +G+ AAAR ARYA ++  A+   A  ++ AH  
Sbjct: 73  WAQRAQALGGLLELPVRIAHVKVPADGSGIEAAARTARYAALAAMAREAGAGHVLLAHHR 132

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI----RSFLLQR 184
           DDQ ETV +R  R    +GM              L   RP+L   R  I    ++F    
Sbjct: 133 DDQAETVLLRLLRGAGVEGMAAM---REASPRDGLLYLRPWLDLGRAAIVQAAQAFAALT 189

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
                +DPSN D R+ R  VR  +  +    L  +   +Q +  +    +   +     V
Sbjct: 190 GWQAVQDPSNVDPRYTRAAVRATLAPL----LNARWPGWQAIVSRHARQMGEAVEILREV 245

Query: 245 HMRSIIAISQD--------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
                  +  D           +       +LR      G  + +P    +  +M  L+ 
Sbjct: 246 AREDYARLEPDEAGFALAPWRELSPPRQAQVLRYWLGAQG--LRMPSEARLRDLMRQLRQ 303

Query: 297 ------GKRGCVSIGRVVIDRRANFLWITRAVRN 324
                  ++  V+     I      +W+  A   
Sbjct: 304 LHALGHDRQLRVAHEGHEIRCHRGRVWLAPAGAR 337


>gi|257463149|ref|ZP_05627550.1| cell cycle protein MesJ [Fusobacterium sp. D12]
          Length = 409

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 103/299 (34%), Gaps = 28/299 (9%)

Query: 38  ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRLRIAHS----VVSWKNS 92
            L  +    SF  +    + + H +R+ A +E   +  D   +  +        V     
Sbjct: 3   MLLKLQEQLSFQML---LLHLHHMIRQEAAEEDYLFCLDYAKKKNLEIIARKMDVPSYAK 59

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
           K    L  A R  RY    +  K      I TAH  DD LET + R  R  + +G  L+G
Sbjct: 60  KEGQSLEEAGRILRYQFFYQIQKQRAYHKIATAHHLDDHLETFFFRLLRGSSMEG--LAG 117

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +             RP     + +I S+L +  I++C+D +N +  + R R+R  +    
Sbjct: 118 ISRKQADK-----IRPLRDFEKAEILSYLERHQIAYCKDKTNEETEYSRNRIRLEL---- 168

Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA---ISQDILNIDSTLLFYLLR 269
           L  L     K+++        +     +   +  ++      IS   L  +       + 
Sbjct: 169 LPQLKSYNPKWKEKVASFMEELEERKEEEEGIDWKAYWKEGFISVTKLQKEKPYFRKKIL 228

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-IDRRANFLWIT---RAVRN 324
               +          + + ++   L+ G      +       +  + +W+    +  RN
Sbjct: 229 YKYLLSKQI--PINRKQIHQIFTLLEKGGSLSYDLKNFWKFKKEYDRIWVESLQKEERN 285


>gi|319442401|ref|ZP_07991557.1| hypoxanthine phosphoribosyltransferase [Corynebacterium variabile
           DSM 44702]
          Length = 538

 Score =  153 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 98/271 (36%), Gaps = 22/271 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ++  VSGG DS+ L  A            +  + ++VDH L++ +       + 
Sbjct: 26  LHRGDAVVCGVSGGGDSLALAAACV-------HAGLAVTTVTVDHRLQDGSDRVAARAAQ 78

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C  L    +VV+     P  G    AR ARY  + E A   +   ++ AHT DD  E +
Sbjct: 79  QCRDLGATATVVTVDVDGPGEGP---ARAARYRALGEAA---DGRPVLVAHTADDDAEGL 132

Query: 136 YMRSQRDYAEKGM-GLSGMCD--TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            +   R      + GL  +     ++     ++ RP L   R   R    +  +   +DP
Sbjct: 133 LLSLTRGSGTGSLAGLREITGDHPVVDAGASFLGRPLLAATRRQTRGSCAELGLGIWDDP 192

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
            N      R RVR  +  +    L  ++        ++    A L+       + S   +
Sbjct: 193 HNEHPEILRSRVRHELLPVMREILGPRVDAALTRSARMLREDADLLDDQAAGALESAGVV 252

Query: 253 SQDIL------NIDSTLLFYLLRVSAAICGG 277
             D L      +  + L   +LR   A   G
Sbjct: 253 PGDQLPVTVLADRPAPLRRRMLRDWLAGVAG 283


>gi|302559297|ref|ZP_07311639.1| tRNA(Ile)-lysidine synthase [Streptomyces griseoflavus Tu4000]
 gi|302476915|gb|EFL40008.1| tRNA(Ile)-lysidine synthase [Streptomyces griseoflavus Tu4000]
          Length = 341

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 118/305 (38%), Gaps = 13/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           ++   ++VDH L+  +      V    + L 
Sbjct: 42  VLVACSGGADSMALASALAFEAPRLG---VRAGGVTVDHGLQAGSDLRAAEVVLRLTELG 98

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +              G  AAAR+ARYA +   A+   A  ++  HT DDQ ETV +   R
Sbjct: 99  LEPVESVAVTVGRDGGPEAAARDARYAALDAVAERHGACAVLLGHTRDDQAETVLLGLAR 158

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM        +    RPFL+  R+  R   + +++   +DP NTD  + R
Sbjct: 159 GSGIR--SLSGMAAVS--GADGRYRRPFLQVDRQTARKACMAQSLPVWDDPHNTDPAYTR 214

Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            R+R      +       +   + +   L     +A+     +       +   +    L
Sbjct: 215 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDAWAGRAEAGVRDADGRLECAKL 274

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRANF 315
                 +   +   AAI  G  +   +      +  L +G   +G +++   V+ RR   
Sbjct: 275 YELPPAVRRRVLRRAAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGRVVARRQGG 334

Query: 316 LWITR 320
             + R
Sbjct: 335 RLVIR 339


>gi|320101607|ref|YP_004177198.1| tRNA(Ile)-lysidine synthetase [Isosphaera pallida ATCC 43644]
 gi|319748889|gb|ADV60649.1| tRNA(Ile)-lysidine synthetase [Isosphaera pallida ATCC 43644]
          Length = 517

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/327 (20%), Positives = 108/327 (33%), Gaps = 30/327 (9%)

Query: 34  GLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
            LL  L + +          +     H LR   A  E   V  +   L     V  W + 
Sbjct: 75  ALLRLLDAAIRA-GALDWSLTVAHFHHGLRGSQADAEADAVERLAHALGWPVVVERWSDP 133

Query: 93  KPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
                   A  R AR   ++  A    A  ++ AHT DDQ ETV  R  R    +G+G  
Sbjct: 134 PQGIAPAEAPLRAARLEFLARVASHHQARAVVLAHTRDDQAETVLQRVLRGCGPRGLG-- 191

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR----- 206
           G+         + + RP L   R  +R +L      W +DP+NTD    R  +R      
Sbjct: 192 GIPPRRRLTQGVDLLRPLLEVPRACLRDWLTAIGQPWHDDPTNTDQHRTRAWIRHDLLPR 251

Query: 207 ---FVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
               V       L    +  + L  ++ +  A L+      H+    +  +  +++D   
Sbjct: 252 ARRHVNPQADAHLARLARHARILCRRLEHDGARLLRTCWRDHLDESTSSEEARVSLDRIR 311

Query: 264 LFYLLRVS-------AAICGGQISLP----GYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
           L    R              G          +  + R++      +      G  V   R
Sbjct: 312 LAAAPRWLRVEALRGLWRARGWPEADMTQRHWHKLARLVET-PQERSDHFPGGLRVRINR 370

Query: 313 ANFLWITRAVRNLPTLILYPEETTVWD 339
            +F+     + +   L L P E+  WD
Sbjct: 371 NDFV-----ISHPCKLTLSPIESRAWD 392


>gi|108801739|ref|YP_641936.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS]
 gi|119870890|ref|YP_940842.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS]
 gi|108772158|gb|ABG10880.1| tRNA(Ile)-lysidine synthetase-like protein [Mycobacterium sp. MCS]
 gi|119696979|gb|ABL94052.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. KMS]
          Length = 320

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 97/276 (35%), Gaps = 22/276 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E  RF  R L       VA+SGG+DS+ L      +L          +A+ VDH L+  +
Sbjct: 13  EVARFARRHLAGTQRWCVALSGGADSLALTAVAADILPT--------TALIVDHGLQPDS 64

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                       RL  A + V   +     G  AAAR ARY  +           ++  H
Sbjct: 65  AAVAETARAEALRLGCADAHVLRVDVGTSGGPEAAARTARYGALRAA---HGGAPVLLGH 121

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R    + +    +CD   Y       RP L  RR    +   +  +
Sbjct: 122 TLDDQAETVLLGLGRGSGPRSIAGMRVCDPPWY-------RPLLGVRRAATAAACTELGL 174

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
               DP N+D R+ R R+R  V  +    L   +                 +       +
Sbjct: 175 HPWVDPHNSDPRYTRSRLRTEVLPLLEDVLAGGVAAALARTAAALQDDNDTLDAQADAAL 234

Query: 247 RSIIA----ISQDILNIDSTLLFYLLRVSAAICGGQ 278
             + A     +  +  + + +   ++R      G +
Sbjct: 235 AEVTAGAGLDTARLAELPAAIRRRVIRSWLLAGGAR 270


>gi|297159327|gb|ADI09039.1| tRNA(Ile)-lysidine synthase [Streptomyces bingchenggensis BCW-1]
          Length = 375

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 7/211 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           ++   ++VDH L++ ++     V++    L 
Sbjct: 38  VLVACSGGADSMALASALAFEAPKLG---VRAGGVTVDHGLQDGSEVRAAEVAERLRLLG 94

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +        +     G  AAAR+ARYA +   A+   A  ++  HT DDQ ETV +   R
Sbjct: 95  LEPVECIGVSVGRDGGPEAAARDARYAALDTAAERHGAVAVLLGHTRDDQAETVLLGLAR 154

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFLR  R+ +R   L +++   +DP N D  + R
Sbjct: 155 GSGIR--SLSGMAQVS--GAGGRYRRPFLRLDRQTVRRACLAQSLPVWDDPHNVDPAYTR 210

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            RVR     I   AL   + +      +++ 
Sbjct: 211 SRVRHEALPILEKALGKGVVEALARTAQLSR 241


>gi|29831207|ref|NP_825841.1| cell cycle protein [Streptomyces avermitilis MA-4680]
 gi|61217336|sp|Q82EF1|TILS_STRAW RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|29608321|dbj|BAC72376.1| putative cell cycle protein [Streptomyces avermitilis MA-4680]
          Length = 345

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 74/319 (23%), Positives = 126/319 (39%), Gaps = 17/319 (5%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           R     L  P  +LVA SGG+DSM L  AL           I+   I+VDH L+  +   
Sbjct: 34  RDVPHDLPPPPLVLVACSGGADSMALASALAFEAPKLG---IRAGGITVDHGLQSGSDLR 90

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              V      L +  +           G  AAAR+ARYA +   A+   A  ++  HT D
Sbjct: 91  ADEVVGRLVDLGLTPTESIAVTVGRDGGPEAAARDARYAALDAAARRHGACAVLLGHTRD 150

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           DQ ETV +   R    +   LSGM             RPFL+  R+  R   + +++   
Sbjct: 151 DQAETVLLGLARGSGIR--SLSGMAAVS--GTGGRYRRPFLQLDRQTARKACMAQSLPVW 206

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY-----LTV 244
           +DP N D  + R R+R         AL   + +      +++   A  +  +      +V
Sbjct: 207 DDPHNADPAYTRSRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDVWAGQAEASV 266

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKRGC 301
              + +     +  +   +   +LR +A   G   G +       ++R++   +   +G 
Sbjct: 267 RDAAGLLECAKLYALPPAVRRRILRRAAIEAGAPAGSLFARHIEEVDRLITGWRG--QGA 324

Query: 302 VSIGRVVIDRRANFLWITR 320
           +++   V+ +R     + R
Sbjct: 325 INLPGKVVAQRQGGRLVIR 343


>gi|11467837|ref|NP_050888.1| hypothetical chloroplast RF62 [Nephroselmis olivacea]
 gi|11467908|ref|NP_050959.1| hypothetical chloroplast RF62 [Nephroselmis olivacea]
 gi|61216751|sp|Q9T390|TILS_NEPOL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|5880766|gb|AAD54859.1|AF137379_82 hypothetical chloroplast RF62 [Nephroselmis olivacea]
 gi|5880837|gb|AAD54930.1|AF137379_153 hypothetical chloroplast RF62 [Nephroselmis olivacea]
          Length = 367

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 109/277 (39%), Gaps = 17/277 (6%)

Query: 2   FLSPIESVRFF-----VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           +LS  E +R F     ++ LV P+  +L++ SGG DS+ LL  L  + ++ ++   +   
Sbjct: 33  YLSMREILREFEEACLLQGLVSPSTRLLISCSGGQDSVTLLFLLCQLQTNWTW---RLGV 89

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
           +  +H  R  + +    ++ +C    ++    S+  S  +       R  R  ++   + 
Sbjct: 90  VYCNHMWRYGSIETPAKLARICLLFGVSC---SFSVSGSRLQKEEEGRSWRLRVLCRMSS 146

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-----CDTILYDLNLWISRPFL 170
             +   I T HT  D++ET+     R  +  GM                 +++ I RP L
Sbjct: 147 IHSWFYISTGHTASDRIETLLSNVLRGSSSSGMRSINWYTSLDTQVGHRRISIPIIRPLL 206

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
              R ++R++  +  +  C DPSN D R  R R+R  +     H    ++ +      +V
Sbjct: 207 GISRLELRNYANRWKLPLCYDPSNQDQRIRRNRIRHELLPYLRHWWNPQIDRLLAQTAEV 266

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
            +  +       T   +    I    +     +   +
Sbjct: 267 TSWESSYYDLICTQICQQYEWIGDGGVRFPWRIFHSI 303


>gi|90994574|ref|YP_537064.1| hypothetical protein 327 [Porphyra yezoensis]
 gi|122194644|sp|Q1XDA4|TILS_PORYE RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|90819138|dbj|BAE92507.1| unnamed protein product [Porphyra yezoensis]
          Length = 329

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/276 (21%), Positives = 106/276 (38%), Gaps = 31/276 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+S IE        L Y + +LV+ SGG DS+ L+  L+     ++    K S I  DH 
Sbjct: 11  FISTIEKNNL----LPYNSSLLVSFSGGQDSLALVKILYDF---KNIYNWKISLIHFDHR 63

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            R  +    + V        ++   V +            +R+ RY  +   A   N   
Sbjct: 64  WRSDSMLVSKQVIKYAKMCNLS---VYYFECPKYLNTEETSRKWRYLTLINTAYVNNFNT 120

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+ AHT  D+ ET+     R  +  G  LS +  +      + + RP L C R +   F 
Sbjct: 121 IVLAHTATDKAETMLSNLFRGTSLDG--LSSIHWSSQLSNAVHLVRPLLNCYRSETSWFC 178

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +    D SN ++   R R+R+ +          ++++                  Y
Sbjct: 179 RKYFLPVWIDQSNYNNSLSRNRLRQELIPYIKSYFQPQIEQ----------------KCY 222

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG 277
           L   + S+I++  D L  ++  ++ L++    +   
Sbjct: 223 L---LSSLISLDVDFLEQEALRIYSLIQHEELLAMN 255


>gi|116074359|ref|ZP_01471621.1| hypothetical protein RS9916_37952 [Synechococcus sp. RS9916]
 gi|116069664|gb|EAU75416.1| hypothetical protein RS9916_37952 [Synechococcus sp. RS9916]
          Length = 342

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 101/292 (34%), Gaps = 10/292 (3%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +L+AVSGG DSM L   L  +         +      DH     +      +  
Sbjct: 31  LPAGEPLLLAVSGGQDSMALTALLLGLS---RLHHWELHLWHGDHSWHPGSAAIASELQA 87

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                 +  +V     ++      A AR  RYA ++  A  + + ++   HT  D+ ET+
Sbjct: 88  WSLGQGLPITVDRNAKNEATGRTEAEARRWRYAQLATCATALGSRVVC-GHTATDKAETL 146

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++  R     G+G       +  + +  + + RP L   R+D  +     N+    DPS
Sbjct: 147 LLQLTRGTDLAGLGSLRRQRLLDAEQHPAVHLVRPLLGFNRDDTAAICRDLNLPLWLDPS 206

Query: 194 NTDDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           NT+ RF R R+R+ V  +          +M    +   +V +    L+   L        
Sbjct: 207 NTNLRFSRNRIRQEVMPVLNDLYPGCEQRMAALSERLSQVQDTQQTLLALSLESLKAGEG 266

Query: 251 AIS-QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           A +      + +  L     + A       + P    +   +    +     
Sbjct: 267 AENVLQRKRLGALPLPLRRDLLAHWLQSCGAPPLKAPLLEELARATAAGSPA 318


>gi|332295572|ref|YP_004437495.1| tRNA(Ile)-lysidine synthase [Thermodesulfobium narugense DSM 14796]
 gi|332178675|gb|AEE14364.1| tRNA(Ile)-lysidine synthase [Thermodesulfobium narugense DSM 14796]
          Length = 438

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 52/253 (20%), Positives = 100/253 (39%), Gaps = 15/253 (5%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCSRLRI 82
           +A+SGG+DS+ L   L  + S     K  F  +  DH  R+     E   + +   +   
Sbjct: 30  IAISGGADSVFLTYILSRLKS-----KDDFILLHFDHGWRKKDLILERNLIINYAEKYN- 83

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              ++   +    +     AR+ R+A        IN+ ++ T H  +D+ ET      R 
Sbjct: 84  -FRIIFGSSGNTGSLNEEDARKRRFAFFCNIMDKINSNVLFTGHNLNDRFETFLWNICRG 142

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +G  +  + +   +   + I  P +  +R+ IR+F     + +  D  N D R++RV
Sbjct: 143 TGIRG--ILSLKEIRQFGK-INIISPLIHLKRDKIRTFCEYLKLDYISDFYNDDIRYKRV 199

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
            +R+ +     +     ++ F        +    L    +T  +   + +S    NI   
Sbjct: 200 FIRKEITPRIENVWQNSLEHFDSFIKLAEDEDCYLEK--ITNEIYGKVVLSMPWANI--I 255

Query: 263 LLFYLLRVSAAIC 275
           LL  LL+   A+ 
Sbjct: 256 LLKELLKFDIALI 268


>gi|13507961|ref|NP_109910.1| PP-loop superfamily protein ATPase [Mycoplasma pneumoniae M129]
 gi|2496288|sp|P75549|TILS_MYCPN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|1674311|gb|AAB96257.1| PP-loop superfamily ATPase/cell cycle protein MESJ-like protein
           [Mycoplasma pneumoniae M129]
 gi|301633532|gb|ADK87086.1| tRNA(Ile)-lysidine synthetase [Mycoplasma pneumoniae FH]
          Length = 289

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 79/199 (39%), Gaps = 14/199 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                +  VSGG DSM LL   H  ++           + V++  R TA  + + V + C
Sbjct: 2   PKTQYIAGVSGGPDSMLLLKLYHKKIA---------CVVHVNYNKRTTALRDQKMVEEYC 52

Query: 78  SRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +L++   V +       +    A AR+ R+    + A       ++ AH  DD +E   
Sbjct: 53  KQLKVPLIVHTVPEDTVWKKNFQAQARKIRFEQFQKAASLYKVDKLLLAHHRDDFIEQAK 112

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+          G+     T      + + RPF++  + +I +   +  + +  D +N  
Sbjct: 113 MQLDARKRAMYYGI----KTRGELYGMKVYRPFIKYWKNEILALCEEHKVPYGIDETNAQ 168

Query: 197 DRFERVRVRRFVRDIDLHA 215
             ++R +VR+ + +     
Sbjct: 169 PIYKRNQVRQEIANWSKEE 187


>gi|119478960|ref|XP_001259509.1| PP-loop family protein [Neosartorya fischeri NRRL 181]
 gi|119407663|gb|EAW17612.1| PP-loop family protein [Neosartorya fischeri NRRL 181]
          Length = 638

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 85/258 (32%), Gaps = 55/258 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+++ +AVSGG+DSM L      +        +  +A  VDH  RE +  E R V+   S
Sbjct: 45  PSNLGLAVSGGADSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARNVATWLS 104

Query: 79  RLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            + +   ++   W      +     AR  R+  +    +    + ++  H  DD +ET  
Sbjct: 105 DMGLQAQILELEWPQGSSVSAFETHARRLRFQALGIACRDRRISALLMGHHQDDNVETTL 164

Query: 137 MRS---QRDYAEKGM----------GLSGMCDT------ILYD----------------- 160
            R     R     G+          GL G+ ++         D                 
Sbjct: 165 WRLCTGARGAGLAGIPPIARIPECHGLYGVSESGSLAILRPRDDRAGAPSALSGNTTTSQ 224

Query: 161 ----------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVR 203
                             + + RP L   +  + +   Q  I +  DP+N D     R  
Sbjct: 225 VQGKDEGKQPGFSMATGGILLCRPLLAFPKASLLATCHQHRIPYVSDPTNFDPTLTPRNA 284

Query: 204 VRRFVRDIDLHALYLKMK 221
           +R  V       L   ++
Sbjct: 285 IRSLVSPSSPPLLPRALQ 302


>gi|302530792|ref|ZP_07283134.1| predicted protein [Streptomyces sp. AA4]
 gi|302439687|gb|EFL11503.1| predicted protein [Streptomyces sp. AA4]
          Length = 348

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/316 (24%), Positives = 122/316 (38%), Gaps = 17/316 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR F+ ++  P  + VAVSGG+DS+ L  A   VL  R    ++  A+ VDH L+  + 
Sbjct: 35  AVRDFLATVAVPGEVCVAVSGGADSLALAEATAYVLRHR---DVRTRALVVDHGLQADSA 91

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                 + V   L +    V   +   + G  AAAR ARY  + E A      L++  HT
Sbjct: 92  AVASEAATVVKGLGVDAVEVHAVHVVGKGGPEAAARAARYHALRE-ALPNGEGLVLLGHT 150

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R    + +             +    RP L   R    +   +  + 
Sbjct: 151 QDDQAETVLLGLGRGSGPRSLAGM-------RPHDPPWGRPLLGITRAQTVAACTELGLE 203

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHAL-YLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             +DP N D RF RVR+R     +    L             ++      L      VH 
Sbjct: 204 PWQDPHNADPRFTRVRLRTEALPLLEDVLSGGVAPALARTAAQLREDTEALDTLAARVHE 263

Query: 247 RSIIAISQD--ILNIDSTLLFYLLRVSAAICGGQISL--PGYRSMERVMLFLKSGKRGCV 302
           R++     D  +L  +   L   +     +  G   L     RS++ ++   + G+ G  
Sbjct: 264 RAVREDDLDVAVLAAEPAALRRRVLRRWLLDSGVRELTDAHLRSVDALVARWR-GQGGVW 322

Query: 303 SIGRVVIDRRANFLWI 318
             G +   RR   L +
Sbjct: 323 LPGNLEARRRRGRLSL 338


>gi|333025315|ref|ZP_08453379.1| putative tRNA(Ile)-lysidine synthetase [Streptomyces sp. Tu6071]
 gi|332745167|gb|EGJ75608.1| putative tRNA(Ile)-lysidine synthetase [Streptomyces sp. Tu6071]
          Length = 386

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/306 (25%), Positives = 126/306 (41%), Gaps = 16/306 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           I+   ++VDH L+E +      V+   + LR
Sbjct: 87  VLVACSGGADSMALASALAFEAPRLG---IRAGGVTVDHRLQEGSGRRAAEVAARLTALR 143

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +        +     G  AAAREARYA +   A+   A  I+  HT DDQ ETV +   R
Sbjct: 144 LTPVEAVAVDVGRAGGPEAAAREARYAALDAVAEEHGAAAILLGHTRDDQAETVLLGLAR 203

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM +  +        RPFLR  R+  R   + +++   +DP NTD  + R
Sbjct: 204 GSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTARKACMVQSLPVWDDPHNTDPAYTR 259

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-----TVHMRSIIAISQDI 256
            R+R         +L   + +      +++   A  +  +      TV           +
Sbjct: 260 SRLRHEGLPALEKSLGKGVVEALARTAQLSRDDADALDAWAARAAGTVRDEHGALDCAGL 319

Query: 257 LNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
             + + +   +LR +       GG +       ++R++   + G+R     G+V   R  
Sbjct: 320 YALPAAVRRRVLRAALLDAGAPGGALFAAHIEEVDRLITAWR-GQRALNLPGKVEARRLG 378

Query: 314 NFLWIT 319
             L I 
Sbjct: 379 GRLVIR 384


>gi|238499739|ref|XP_002381104.1| PP-loop family protein [Aspergillus flavus NRRL3357]
 gi|220692857|gb|EED49203.1| PP-loop family protein [Aspergillus flavus NRRL3357]
          Length = 637

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 84/265 (31%), Gaps = 67/265 (25%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S  +P  + +AVSGG+DSM L   L           I  +A  VDH  RE +  E   VS
Sbjct: 34  SRPFPRRLGLAVSGGADSMALAY-LSKQWEKSRPNDISVTAFVVDHKAREESTREANTVS 92

Query: 75  DVC---------------------SRLRIAHSVV------SWKNSKPQTGLMAAAREARY 107
                                    +L +   ++      S K+    T     AR  R+
Sbjct: 93  QWLQDIGIYASPYTLAFNTKQMLTRKLGVKSEILELTWPESTKSPSKVTAFETHARRLRF 152

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD------- 160
             + +  +      ++  H  DD +ET   R       KG GL+G+ +            
Sbjct: 153 QALGKACRDRQIEALLMGHHQDDTVETTLWRLC--TGAKGAGLAGIPEVTRIPECHGIYG 210

Query: 161 -----------------------------LNLWISRPFLRCRREDIRSFLLQRNISWCED 191
                                          + I RP L   +  + +   + NI +  D
Sbjct: 211 VSESGSSYTIPSRPQRSSAQARNDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSD 270

Query: 192 PSNTDDRFE-RVRVRRFVRDIDLHA 215
           P+N D     R  +R  + +  L  
Sbjct: 271 PTNFDPTLTPRNAIRSLLAEDKLPK 295


>gi|78211629|ref|YP_380408.1| MesJ-like protein [Synechococcus sp. CC9605]
 gi|78196088|gb|ABB33853.1| possible MesJ [Synechococcus sp. CC9605]
          Length = 334

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 105/287 (36%), Gaps = 12/287 (4%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   + +L+AVSGG DSM     L  +           +    DH   + +      +S 
Sbjct: 29  LPKGSSLLLAVSGGQDSM---ALLALLQDLAPLHGWGLNLWHGDHGWHDNSSRIAAELSS 85

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C + +++  V   + +  +    A AR+ RY  +++      A ++ T HT  D+ ET+
Sbjct: 86  WCKQRQLSLQVD--QAAPGEVPSEAKARQWRYERLAQRGNQAGADVV-TGHTASDRAETM 142

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            ++  R     G+        +  +    + RP L  +R D         +   EDPSN 
Sbjct: 143 LLQLARGSDLAGLAALPSVRPLSPE-GPRLRRPLLHLQRRDTLQICRDLALPIWEDPSNQ 201

Query: 196 DDRFERVRVRRFVRDIDL---HALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
              F R R+R+ V  +          ++    +   +V ++   L    L +   +    
Sbjct: 202 SPEFARNRIRQEVLPVLEELHPGCSQRISDLAERVSQVRDSQTELSQMALELLQTAAGLD 261

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
            + +  + S     LL       G  +  P    +  +   L+SG  
Sbjct: 262 RRGLGALSSATRRLLLAQWLQQQG--VPAPPASQLNELSRRLESGAP 306


>gi|126728389|ref|ZP_01744205.1| tRNA(Ile)-lysidine synthetase-like protein [Sagittula stellata
           E-37]
 gi|126711354|gb|EBA10404.1| tRNA(Ile)-lysidine synthetase-like protein [Sagittula stellata
           E-37]
          Length = 475

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/431 (20%), Positives = 146/431 (33%), Gaps = 73/431 (16%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +P+ I +AVSGG DSM +L   H          ++   ++V+H  RE A  E   V+  C
Sbjct: 24  FPSEIGLAVSGGGDSMAMLALAHGWA---RVFGVRLWVVTVNHGFREEAAAEAEMVAAEC 80

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           + L   H+ + W +       M AAREAR  LI+     +    ++ AHT DD  ET  M
Sbjct: 81  AVLGWPHASLHW-SWDGHGNAMEAAREARVRLIAGWRGRL--RHVLMAHTQDDVAETFLM 137

Query: 138 RSQRDYAEKGM-----------------GLSGMCDTILYDLNLW---------------- 164
           R  R     G+                  L+ M                           
Sbjct: 138 RLARGSGVDGLSKMQARRVVDQPRLGVGALAPMLGEAPAAEGCRYPVIVTADGTAGRDAG 197

Query: 165 -----------ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR---- 209
                      I RP L  RR D+R ++    + + +DPSN +  + R R+R  +     
Sbjct: 198 VDWWVEGETFEILRPCLAMRRADLRHYVRVLQVPFVDDPSNENPAYARARIRAALPGLSG 257

Query: 210 -DIDLHALYLKMKKFQDLRVKVNNAVAMLIP------KYLTVHMRSIIAISQDILNIDST 262
             +D+  L    ++    R  +    A          ++       ++        +   
Sbjct: 258 LGLDVPTLAATAERMARARNALRLQAADAWERIGHEARHRGAATGDLLLERDGFAGLPRE 317

Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322
           +   LL  +     G +  P    +E V+  + SG  G +      I      + + R  
Sbjct: 318 VQLRLLAAAIGFVSGTVRRPRAARLEEVLDRVLSGGGGTLGG--CEILAERTHIRVFREY 375

Query: 323 RNLPTLILYPEETTVWDGRYQFQN------LSDSLIQIGPQSYRKADVPSGIPPIIAQRA 376
             L  +    +   +WDGR+              L  +G   ++   +       +  RA
Sbjct: 376 AALEAMAGNDDP--LWDGRWLLTPEARQKMGPVRLRPLGDAGWQS--LSREEREGLTYRA 431

Query: 377 LSSMPSKEGGK 387
             S+P    G 
Sbjct: 432 ARSLPMVATGA 442


>gi|307327055|ref|ZP_07606245.1| tRNA(Ile)-lysidine synthetase [Streptomyces violaceusniger Tu 4113]
 gi|306887353|gb|EFN18349.1| tRNA(Ile)-lysidine synthetase [Streptomyces violaceusniger Tu 4113]
          Length = 367

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 7/211 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L A SGG+DSM L  AL     +     ++   ++VDH L++ +      V+D    L 
Sbjct: 59  VLAACSGGADSMALASALAF---EAPRAGLRAGGVTVDHGLQQGSDARAAEVADRMRALG 115

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +A       +     G  AAAR+ARYA +   A+   AT ++  HT DDQ ETV +   R
Sbjct: 116 LAPVEAIAVSVGRGGGPEAAARDARYAALDGAAERHGATAVLLGHTRDDQAETVLLGLAR 175

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM        +    RPFL+  R  +R   L +++   +DP N D  + R
Sbjct: 176 GSGTR--SLSGMAWVS--GADGRYRRPFLQLDRHTVREACLAQSLPVWDDPHNVDPSYTR 231

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            RVR     I   AL   + +      +++ 
Sbjct: 232 SRVRHEALPILEKALGKGVVEALARTAQLSR 262


>gi|326386204|ref|ZP_08207828.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209429|gb|EGD60222.1| tRNA(Ile)-lysidine synthetase-like protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 322

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 124/311 (39%), Gaps = 18/311 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       + +AVSGG DS         +L+        F+  +VDH LR  +  E   V
Sbjct: 21  RIFPEGTPVGLAVSGGPDS-----LALLLLAHAVLPAQGFAVATVDHGLRAESAGEAAMV 75

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           + +C+   IAH  +    + P + +   AR ARY  + +       T ++TAH  DDQ E
Sbjct: 76  AHLCAERGIAHDTLRISLA-PGSAIQERARAARYRALEDWRVGRGLTALVTAHHADDQAE 134

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ MR  R    +G+        +     + + RP L   R D+ + L  R I+  +DPS
Sbjct: 135 TLVMRLNRGAGLRGLAAMRARVPVPGGEGV-LLRPLLGWARADLAALLGDRGIAAVDDPS 193

Query: 194 NTDDRFERVRVRRFVRD---IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N D RFERVRVR  +     ID   L        +    +      L   +        I
Sbjct: 194 NRDVRFERVRVRMGLGGADWIDPAGLAQAADHLAEADAALEWVADRLAAGFGG--DEGEI 251

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
           A+  ++L    TL         A  GG+   P  R + R    L  G+    ++  +  D
Sbjct: 252 ALPDEVLPRTLTLRLL--ERVIARLGGKT--PRGRDLARWHDRLAQGEVA--TLAGIRGD 305

Query: 311 RRANFLWITRA 321
            R      TRA
Sbjct: 306 GRTRPWRFTRA 316


>gi|72163296|ref|YP_290953.1| helix-turn-helix, Fis-type [Thermobifida fusca YX]
 gi|123628619|sp|Q47KU2|TILS_THEFY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|71917028|gb|AAZ56930.1| helix-turn-helix, Fis-type [Thermobifida fusca YX]
          Length = 324

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/274 (24%), Positives = 101/274 (36%), Gaps = 15/274 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +R L   + +LVA SGG DS+ L  A   V        ++   ++VDH L+E + 
Sbjct: 14  AVRRALRDLPAGSLVLVACSGGPDSLALAGATAFVAPRLG---LRAGGVTVDHGLQEGSA 70

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +    V+ +   L                G  AAAR ARYA + + A    A  ++  HT
Sbjct: 71  ERADTVAALLRNLGFDPVERVSVTVGTAGGPEAAARSARYAALEKTADVHQAAAVLLGHT 130

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R    + +                  RPFL   R  +          
Sbjct: 131 RDDQAETVLLRLARGSGARSLAAMAT-------RTGRYLRPFLDVDRRTVHEAASLMGFE 183

Query: 188 WCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
              DP NTD  + R RVR      +  +    +   + +   L     +A+     +   
Sbjct: 184 PWSDPHNTDPAYTRSRVRHEALPVLERVLGPGITEALARTATLLRDDADALDAWADQAQQ 243

Query: 244 VHMRSIIAISQDILN-IDSTLLFYLLRVSAAICG 276
              R   A+    L  +   +   LLR  A   G
Sbjct: 244 QVGRGPTALDAAGLAGLPRAIRTRLLRRIALAAG 277


>gi|332526282|ref|ZP_08402411.1| putative cell cycle protein [Rubrivivax benzoatilyticus JA2]
 gi|332110116|gb|EGJ10744.1| putative cell cycle protein [Rubrivivax benzoatilyticus JA2]
          Length = 429

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 112/302 (37%), Gaps = 22/302 (7%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL---RIA 83
           SGG DS  LL A      +     ++  A+ V H L  +A   +  +   C+R     + 
Sbjct: 10  SGGRDSTALLHATARAARELG---LEVHALHVHHGLVASADIWLAQLRAQCARWARSGLP 66

Query: 84  HSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
               + +          + A AR  RYA ++  A+     L++ A    DQ ET+ +++ 
Sbjct: 67  LHFHATRLAGAPARGESVEAWARRERYAALAAMAQAAGCDLVLLAQHRRDQAETLLLQAL 126

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +   L+ M      D  +W +RP+L   RE+I ++L +  + W +D SN D+ F 
Sbjct: 127 RGGGAE--ALAAMPRRAERDGLVW-ARPWLDRPREEIEAYLRRHRLRWLDDESNDDEAFA 183

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN-- 258
           R R+RR V    L A     ++      +   A A L  K L     S +A     L+  
Sbjct: 184 RNRLRRQVWPALLAAFPEAEQQLAASARRAAEAAAAL--KVLADIELSALAEDDGPLDVA 241

Query: 259 ----IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRAN 314
               +  T    +LR        +          R+   L +            +     
Sbjct: 242 GWRGLPETHRAPVLRRWLQSVLARPVPESLVR--RLADELPAAASARWPAPGGELRLHDA 299

Query: 315 FL 316
            L
Sbjct: 300 RL 301


>gi|227489338|ref|ZP_03919654.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227090711|gb|EEI26023.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum
           ATCC 51867]
          Length = 270

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 111/298 (37%), Gaps = 32/298 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            V +SGG DS+ L  AL +         +  +A+ +DH L++ +++     + +      
Sbjct: 2   AVGLSGGPDSLALTAALVA-------EGVHVTALCIDHGLQDGSREVSEEAARIARSWGA 54

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V+      P     +AAR+ARY   +E         +  AHT DD  ET  +   R 
Sbjct: 55  EARVIPINVDPPT---ESAARQARYRAFAEW-----GGPVCVAHTMDDLAETFLIAGLRG 106

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                    GM +T   +    I RP L  RR D  +   +  ++   DP N D  F RV
Sbjct: 107 MT------CGMRETAEVE-GAQIIRPLLAVRRTDTVATCAEIGVTPWHDPQNADPAFTRV 159

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
           RVRR V  +    +        D    +  A      +   +       +     ++   
Sbjct: 160 RVRREVLPLLGDIVG------GDAVPALAQAARRTQAEATRMTAT---TVPLATKDLPEA 210

Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
               ++  +    G ++S P    +++++     G+      G +V  R ++ + I  
Sbjct: 211 TRQDIIAGALRAAGAKVSKPHVEGVDKLLTEWH-GQGPRDVGGGLVALRVSDAIKIEE 267


>gi|237654058|ref|YP_002890372.1| tRNA(Ile)-lysidine synthetase [Thauera sp. MZ1T]
 gi|237625305|gb|ACR01995.1| tRNA(Ile)-lysidine synthetase [Thauera sp. MZ1T]
          Length = 451

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 104/323 (32%), Gaps = 16/323 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + +  A+SGG DS+ L   L  +     F      A  VDH L   A    R  ++ C  
Sbjct: 26  SRVCCALSGGVDSVVLFELLRRLQPRFGF---SLRAAHVDHGLSPNAAAWARACAERCLA 82

Query: 80  LRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
             +   V   +  +    GL AAAR A           ++   +   H  DDQ ET+  R
Sbjct: 83  AGVPLQVFRVEVERAHADGLEAAARAA----RHAALAQVDCDWLAFGHHQDDQAETLLFR 138

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R     G       +         +       R   +  +     + W ED SN + R
Sbjct: 139 LLRGTGVHGAAAMRAVEPGGAGRAGRLRPLLGLRR-AQLLEWAGAHGLGWVEDESNAELR 197

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML--IPKYLTVHMRSIIAISQDI 256
           F R  +R  +  +        +            A A+L  +         + +    D+
Sbjct: 198 FTRNALRHRLLPVAEGLFPAAVPNLARAAAHFAEADALLGELAAIDAAACGAPVLCRADL 257

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS---GKRGCVSIGRVVIDRRA 313
           L +       LLR      G    LPG   +   +  L++        + +G  V     
Sbjct: 258 LALTPARQANLLRWLLL--GSGAPLPGAAPLGEALRQLRACEPAHPLRLPLGAWVCCAYR 315

Query: 314 NFLWITRAVRNLPTLILYPEETT 336
           + +W+  A    P  + +  E  
Sbjct: 316 DRVWLEPAQPPAPQALHWQGEAA 338


>gi|118475434|ref|YP_892513.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414660|gb|ABK83080.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 336

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           ++    L+A S G+DS  L   L+          I+F    +++  R  + +E     ++
Sbjct: 9   LHHKKCLLAFSYGTDSTALFHILNE-------KNIEFDCAFINYKTRVQSDEEEVSAKEL 61

Query: 77  CSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           C +      + ++  N +  +     AR+ R+    E     N   ++ AH  +D LE +
Sbjct: 62  CLKFNKNIYIKIAPLNLENGSNFEKKARDIRHKFFDEICIKFNYDTLILAHQLNDCLEWL 121

Query: 136 YMRSQRDYA-EKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIRSFLLQRNISWCE 190
           +M+  +     +  GL      I    N+     + RP +   R +I S+L Q+NI++  
Sbjct: 122 FMQLSKGSGTVQLCGLEPTNTKIAEFENIKKQISVIRPLINVSRNEIISYLKQKNINYFT 181

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKY 241
           D SN D +F+R  +R    D  +       +K F+ LR      +   I + 
Sbjct: 182 DISNFDFKFKRNFIRANFSDAFIEKFEKGVIKSFEFLRADRTALLGEFIYED 233


>gi|329723928|gb|EGG60453.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis VCU144]
          Length = 166

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 11/161 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             AHI+VAVS G DSM LL    S+L+D      K + + V+H LRE + +E  ++ + C
Sbjct: 10  KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66

Query: 78  SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  I   +     S        +   AR+ RY    +    + A +++TAH  DDQLET
Sbjct: 67  QQHHIDIYIKRLDLSDIVAAGNSIQQEARQCRYEWFGDIIAQLRADVLLTAHHLDDQLET 126

Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  R     + +  +G++       Y     + RP L  ++
Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKK 163


>gi|86157919|ref|YP_464704.1| tRNA(Ile)-lysidine synthetase-like [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774430|gb|ABC81267.1| tRNA(Ile)-lysidine synthetase-like protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 451

 Score =  151 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 121/331 (36%), Gaps = 16/331 (4%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +E+ R   R L  PA  +LVA+SGG+DS    +         +    +  A+ +DH LR 
Sbjct: 14  LETARR--RRLFGPADRVLVALSGGADSTA--LLAALAALRDAGALAEVRALYLDHGLRT 69

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            ++ E       C+RL +               + A AR  RYA + E A    +T I T
Sbjct: 70  GSEPEAASARGACARLGVPLEERRLAVKA--GNVQAEARRVRYAALREAAARAGSTRIAT 127

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            HT  DQ ETV +R  R    +G+         +      + RP +   RE+  ++L   
Sbjct: 128 GHTLGDQAETVLLRLLRGAGARGLA-------AIPPRRGEVIRPLIDRTREEGNAYLRAL 180

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            + W +DP+N   R+ R R+R  +  + L A+     +       +       + +    
Sbjct: 181 GLGWGDDPTNAAPRYARNRLRLELWPL-LRAVAPAADRALARAADLAREDERALDRRARA 239

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVS 303
                 A+    L  +   +   +         G       R +  V+  L+ G+ G  +
Sbjct: 240 VAGDGAAVDLAALRGEPIAVRRRVVRRLWRAATGSGRALEARHVAAVLALLRRGRPGETA 299

Query: 304 IGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
           +      R         A    P   + P E
Sbjct: 300 LPGGRRARCRYGRLELLAGPGAPAPEVAPVE 330


>gi|12044936|ref|NP_072746.1| tRNA(Ile)-lysidine synthetase [Mycoplasma genitalium G37]
 gi|1351480|sp|P47330|TILS_MYCGE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3844671|gb|AAC71302.1| tRNA(Ile)-lysidine synthetase [Mycoplasma genitalium G37]
 gi|166078989|gb|ABY79607.1| tRNA(Ile)-lysidine synthetase [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 290

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 110/298 (36%), Gaps = 32/298 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +      +  VSGGSDSM +L           + K     + V++  R T+  + + V  
Sbjct: 1   MASEKQYIAGVSGGSDSMLMLKL---------YQKKIACVVHVNYNTRSTSLRDQKLVEQ 51

Query: 76  VCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            C +L I   V +       +      AR+ R+    + AK      ++ AH  DD +E 
Sbjct: 52  YCQKLNIPLVVHTVDPDLVWKKNFQNQARKIRFDQFKKTAKLYQTNKLLLAHHRDDFIEQ 111

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             M+          G+   C+       L I RP ++  +++I +   Q +I +  D +N
Sbjct: 112 AKMQLDAKKRAVYYGIKTRCELY----GLKIYRPLMKYWKDEIIALCRQDHIPYEIDETN 167

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS- 253
               ++R  VR  +         ++ ++F      +N  +A  +   +    + ++    
Sbjct: 168 KLPIYKRNEVRLEIEKWSK----IEKEQFYIAICAMNKTIAQKLFVLMKKAKKWLLQPDV 223

Query: 254 -----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
                  I++    +  YL+     + G          ++ ++ F++  ++    +  
Sbjct: 224 RELKRFSIIDQKQLIYSYLIYHKINVNG--------EKIDAILDFIQPSQQKQYRLQN 273


>gi|300859211|ref|YP_003784194.1| cell cycle protein MesJ [Corynebacterium pseudotuberculosis FRC41]
 gi|300686665|gb|ADK29587.1| cell cycle protein MesJ [Corynebacterium pseudotuberculosis FRC41]
          Length = 290

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 115/313 (36%), Gaps = 34/313 (10%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  VR+ V    ++V +SGG DS+ L+ AL +        K +  A+ VDH L+  + 
Sbjct: 12  ACRVAVRA-VTDRDVVVGLSGGPDSLALVAALVA-------EKYQVLAVCVDHDLQPGSN 63

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
               + +D   RL    +VV     +    L A AR ARY  + +  K      ++  HT
Sbjct: 64  RVAEHAADTVRRLGAQATVVRVDVDRNG-SLEANARRARYEALRKFGKP-----VVVGHT 117

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD  ET+ + + R  A   +            +   + RPFL  RR D      +  + 
Sbjct: 118 ADDHAETLLLGALRGKAAGML------------VQGTVWRPFLTVRRADTVGACEELGLE 165

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
              DP N    F RV +R+ V  +    +        D    +  A   +      +H+ 
Sbjct: 166 PWNDPHNNQKEFRRVAIRQQVLPLLADIIG------GDPVPALARAATNIAHDDEALHVS 219

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
              A  +++           L       G  ++     ++ER++          V  G  
Sbjct: 220 D--ATLEELEAAHPAFRRRYLTAFLHKNGAPVTGANIDAIERLVTDWHGQGGIAVGNGLE 277

Query: 308 VIDRRANFLWITR 320
           VI +    L   R
Sbjct: 278 VIRKDGKLLSKER 290


>gi|296271399|ref|YP_003654031.1| tRNA(Ile)-lysidine synthetase [Thermobispora bispora DSM 43833]
 gi|296094186|gb|ADG90138.1| tRNA(Ile)-lysidine synthetase [Thermobispora bispora DSM 43833]
          Length = 325

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 133/318 (41%), Gaps = 17/318 (5%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L   + +L A SGG+DS   L    ++        ++   ++VDH L+E + 
Sbjct: 13  AVRLSLAGLRPGSLVLAACSGGADS---LALAAALGFCAPRLGLRAGLLTVDHGLQEGSD 69

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
              R V+ +   L +  + V         G  AAAR+ARYA +S  A+ + A  ++  HT
Sbjct: 70  QRAREVAALAPELGLEPAEVLTVVVGRAGGPEAAARDARYAALSAAARRLGAVAVLLGHT 129

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R    +   L+GM       ++    RPFL   R   R       + 
Sbjct: 130 RDDQAETVLLRLARGSGSR--SLAGMA-----PVSGIYRRPFLGLSRARTREACAALGLR 182

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
             EDP N+D  + RVRVR+ V  +   AL   + +      ++    A  + ++      
Sbjct: 183 PWEDPHNSDPAYARVRVRKRVIPVLEEALGPGVVEALARTARLCRDDADALDEWADAVYA 242

Query: 248 SIIAISQDIL-----NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--SGKRG 300
                  ++      ++ + +   ++  +A   G   S  G   +E     +    G++G
Sbjct: 243 KARGPEGELAVDVLESVPAAVRRRVIHRAALAAGVPASALGAVHIEEAERLVTGWHGQKG 302

Query: 301 CVSIGRVVIDRRANFLWI 318
            V  G+  + RR   L+ 
Sbjct: 303 VVLPGKKRVVRRYGTLYF 320


>gi|302206900|gb|ADL11242.1| tRNA(Ile)-lysidine synthase MesJ [Corynebacterium
           pseudotuberculosis C231]
 gi|302331467|gb|ADL21661.1| tRNA(Ile)-lysidine synthetase [Corynebacterium pseudotuberculosis
           1002]
 gi|308277154|gb|ADO27053.1| tRNA(Ile)-lysidine synthetase [Corynebacterium pseudotuberculosis
           I19]
          Length = 280

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/313 (22%), Positives = 115/313 (36%), Gaps = 34/313 (10%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  VR+ V    ++V +SGG DS+ L+ AL +        K +  A+ VDH L+  + 
Sbjct: 2   ACRVAVRA-VTDRDVVVGLSGGPDSLALVAALVA-------EKYQVLAVCVDHDLQPGSN 53

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
               + +D   RL    +VV     +    L A AR ARY  + +  K      ++  HT
Sbjct: 54  RVAEHAADTVRRLGAQATVVRVDVDRNG-SLEANARRARYEALRKFGKP-----VVVGHT 107

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD  ET+ + + R  A   +            +   + RPFL  RR D      +  + 
Sbjct: 108 ADDHAETLLLGALRGKAAGML------------VQGTVWRPFLTVRRADTVGACEELGLE 155

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
              DP N    F RV +R+ V  +    +        D    +  A   +      +H+ 
Sbjct: 156 PWNDPHNNQKEFRRVAIRQQVLPLLADIIG------GDPVPALARAATNIAHDDEALHVS 209

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
              A  +++           L       G  ++     ++ER++          V  G  
Sbjct: 210 D--ATLEELEAAHPAFRRRYLTAFLHKNGAPVTGANIDAIERLVTDWHGQGGIAVGNGLE 267

Query: 308 VIDRRANFLWITR 320
           VI +    L   R
Sbjct: 268 VIRKDGKLLSKER 280


>gi|294786616|ref|ZP_06751870.1| tRNA(Ile)-lysidine synthase [Parascardovia denticolens F0305]
 gi|315226203|ref|ZP_07867991.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Parascardovia denticolens DSM 10105]
 gi|294485449|gb|EFG33083.1| tRNA(Ile)-lysidine synthase [Parascardovia denticolens F0305]
 gi|315120335|gb|EFT83467.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Parascardovia denticolens DSM 10105]
          Length = 408

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 17/196 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ L      V +      I+  A  +DH L+  +       ++ C +L 
Sbjct: 45  VLVACSGGRDSLALAYVARIVCASWG---IRCGAAIIDHQLQADSGQVADQTAEQCRKLG 101

Query: 82  IAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           +A  VV     K     G+ AAAR+ RY  +++ A+   +  ++ AHTF DQ ETV +  
Sbjct: 102 LAPVVVRKVQVKDPHGQGMEAAARQTRYQALTDLARHEGSRCLLLAHTFTDQAETVALGL 161

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDD- 197
            R        L+G+      D ++ I RPFL+   R+D  +      ++W +DP+N +  
Sbjct: 162 LR--HPDLRALAGIPARTEKD-SVLILRPFLKAISRQDTEAICRAAGLAWWDDPANGEAS 218

Query: 198 ------RF-ERVRVRR 206
                  +  R R+R+
Sbjct: 219 LGPLPGDYPLRSRIRQ 234


>gi|66800145|ref|XP_628998.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4]
 gi|60462365|gb|EAL60586.1| hypothetical protein DDB_G0293548 [Dictyostelium discoideum AX4]
          Length = 665

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 132/335 (39%), Gaps = 40/335 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVL----SDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            + +++ VSGGSDSM LL  L +      S     K+K + I++DH +     +++ Y+S
Sbjct: 170 KSTLVIGVSGGSDSMVLLYLLKNWCIGENSANVNRKLKITVITIDHKMTNPVAEDIPYIS 229

Query: 75  DVCSRL----------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            + ++L          +I H VV     + +     + R  R  ++   +      LI  
Sbjct: 230 KIINQLINNDNNSNFIKIKHKVVEIDEQRCKQ--QVSLRNQRIEILMSESVGNGNNLIFY 287

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
               +DQ+ET   R  ++    G+        I    ++ + RP L   + +I  F  +R
Sbjct: 288 GTNLNDQMETFIQRINKNSGLDGLAAMTKITKISNTHSVLLVRPLLDFSKLEILDFCSER 347

Query: 185 NISWCEDPSNTDD-RFERVRVRRFVRD-------------IDLHALYLKMKKFQDLRVKV 230
           +I +  DP+N D   + R + R  +RD             I+L      +   + ++ + 
Sbjct: 348 SIQYFNDPTNDDPVSYSRNKTRHQLRDFKEFSIESPLSTTINLKQFLSGLTPIRMIKDQT 407

Query: 231 NNAVAMLIPKYLTVHMRS---------IIAISQDILN-IDSTLLFYLLRVSAAICGGQIS 280
           +  +  ++   L ++            +I +     N +  T+   LL   + I   + S
Sbjct: 408 DKVLQKMLNDILELNEHKNNIRDLRLPLIRVPLKYYNSLPPTIQSRLLHRLSCIISNEFS 467

Query: 281 LPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANF 315
               +   +++  LK      +S  ++ I    NF
Sbjct: 468 FFQQKKYNQIVNSLKQKPNIPISSHKLFIYNEKNF 502


>gi|254994427|ref|ZP_05276617.1| hypothetical protein LmonocytoFSL_16702 [Listeria monocytogenes FSL
           J2-064]
          Length = 153

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 7/135 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS+ LL  L    +     K   S   ++H LRE A +E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSLALLHFL---WNSNLVPKEAISVAHINHHLRENAANEQNVVEAFC 76

Query: 78  SRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               I   +            Q G+   AR  RY    +         +  AH  DDQ+E
Sbjct: 77  ESQGIPFYIEEVDVKSRAESLQKGIEETARIVRYDFFEKVMAEKKINKLALAHHADDQIE 136

Query: 134 TVYMRSQRDYAEKGM 148
           T+ MR  R  A  G 
Sbjct: 137 TILMRLVRGSASIGW 151


>gi|282875439|ref|ZP_06284311.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis SK135]
 gi|281295796|gb|EFA88318.1| tRNA(Ile)-lysidine synthetase [Staphylococcus epidermidis SK135]
          Length = 166

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 11/161 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             AHI+VAVS G DSM LL    S+L+D      K + + V+H LRE + +E  ++ + C
Sbjct: 10  KKAHIVVAVSTGIDSMSLLY---SLLNDYQHTYRKLTCVHVNHGLREQSYEEEAFLREYC 66

Query: 78  SRLRIAHSVVSWKNSK---PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  I   +     S        +   AR+ RY    +    + A +++TAH  DDQLET
Sbjct: 67  HQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHLDDQLET 126

Query: 135 VYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  R     + +  +G++       Y     + RP L  ++
Sbjct: 127 IIYRLFTGRSTRNSLGMTYES----YFNQYKVYRPMLNLKK 163


>gi|61216540|sp|Q6NF90|TILS_CORDI RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
          Length = 292

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 118/312 (37%), Gaps = 33/312 (10%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  VR+ V P  I V +SGG+DS+ L+ AL +             A+ VDH L+  + 
Sbjct: 14  ACRVAVRT-VQPRDITVGLSGGADSLALVAALCA-------EDYNVHALCVDHGLQPGSH 65

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +  +  +           ++S   +     L A AR ARY  +           ++  HT
Sbjct: 66  EVAQQAAHHARTFGAHAEIISVTVAP--GNLEANARTARYQALHS-----RNLPVVVGHT 118

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ + + R  A             ++  NLW  RP L  RR    +   +  I 
Sbjct: 119 ADDQAETLLLGALRGKA---------TGMQIHTDNLW--RPLLGVRRATTLAACTELGIE 167

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
              DP N +  F RV +R  V  +    +        D    ++ A  ++      +H+ 
Sbjct: 168 PWHDPHNANTDFLRVALRTQVVPLLSDIIG------GDAVPALSQAATLIAEDTHALHVD 221

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
           +       +  +   L    L       G ++S    R+++ ++     G++       +
Sbjct: 222 TPDDRIAQLAGMPPALRRRHLVALLQAYGARVSAAHLRAVDALITNWH-GQKAVPVGNGL 280

Query: 308 VIDRRANFLWIT 319
            + R+   L ++
Sbjct: 281 EVTRKDGRLSVS 292


>gi|282866364|ref|ZP_06275409.1| tRNA(Ile)-lysidine synthetase [Streptomyces sp. ACTE]
 gi|282558760|gb|EFB64317.1| tRNA(Ile)-lysidine synthetase [Streptomyces sp. ACTE]
          Length = 359

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 124/305 (40%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL     +     ++   I+VDH L+  +      V    + +R
Sbjct: 60  VLVACSGGADSMALASALAF---ESRKLPVRAGGITVDHNLQPGSGLRAAEVVARLTEMR 116

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +        +     G  AAAR+ARYA + + A+   A  ++  HT DDQ ETV +   R
Sbjct: 117 LDPVEAVAVHVGRDGGPEAAARDARYAALDDAAERHGAAAVLLGHTRDDQAETVLLGLAR 176

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFL+  R+  R   + +++   +DP N D  + R
Sbjct: 177 GSGIR--SLSGMASASGPAGRYR--RPFLQLDRQTARKACMVQSLPVWDDPHNIDPAYTR 232

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI----IAISQDIL 257
            R+R         AL   + +      +++   A  +  +     RS+      +    L
Sbjct: 233 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAARSVRDDDGRLECAGL 292

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314
            I    +   +   A I  G  +   +      +  L +G RG  +I   GRV + R+  
Sbjct: 293 AILPPAVRRRVVRRAVIDAGSPAGSLFARHIEEVDRLITGWRGQGAINLPGRVEVRRQGG 352

Query: 315 FLWIT 319
            L I 
Sbjct: 353 RLVIR 357


>gi|319777782|ref|YP_004137433.1| tRNA(ile)-lysidine synthase [Mycoplasma fermentans M64]
 gi|318038857|gb|ADV35056.1| tRNA(Ile)-lysidine synthase [Mycoplasma fermentans M64]
          Length = 296

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 100/252 (39%), Gaps = 15/252 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DSM LL        + ++ K     + +++  R  +  +V  V + C +  I
Sbjct: 3   ILGISGGPDSMLLLH-------EYAYKKEPIFVVCINYNQRMDSHKDVEIVENYCKQNFI 55

Query: 83  AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            + + ++     +TG     AR+ R  +  ++    NA+ I+ AH  DD LE+ +M+   
Sbjct: 56  DYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKDDFLESFFMQKVA 115

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                     G+  T +Y     I RPF+    +++I     +  + +  D +N    + 
Sbjct: 116 KRKPS---FWGIKKTNIY-KGCLIERPFIDKYFKDEILEKCKKLKLDYAIDYTNELPIYT 171

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R + R  ++ +        + +  +   ++          + +   + I        ++D
Sbjct: 172 RNKFRLKLKKLTNEEKQKIIDEVNEKNKELEWLEKEFNKAFASW--KKIEFKVNYYKDLD 229

Query: 261 STLLFYLLRVSA 272
             +   L+R   
Sbjct: 230 YEIQEQLIRKFI 241


>gi|308190379|ref|YP_003923310.1| cell cycle protein [Mycoplasma fermentans JER]
 gi|307625121|gb|ADN69426.1| cell cycle protein [Mycoplasma fermentans JER]
          Length = 304

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 100/252 (39%), Gaps = 15/252 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DSM LL        + ++ K     + +++  R  +  +V  V + C +  I
Sbjct: 11  ILGISGGPDSMLLLH-------EYAYKKEPIFVVCINYNQRMDSHKDVEIVENYCKQNFI 63

Query: 83  AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            + + ++     +TG     AR+ R  +  ++    NA+ I+ AH  DD LE+ +M+   
Sbjct: 64  DYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKDDFLESFFMQKVA 123

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                     G+  T +Y     I RPF+    +++I     +  + +  D +N    + 
Sbjct: 124 KRKPS---FWGIKKTNIY-KGCLIERPFIDKYFKDEILEKCKKLKLDYAIDYTNELPIYT 179

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R + R  ++ +        + +  +   ++          + +   + I        ++D
Sbjct: 180 RNKFRLKLKKLTNEEKQKIIDEVNEKNKELEWLEKEFNKAFASW--KKIEFKVNYYKDLD 237

Query: 261 STLLFYLLRVSA 272
             +   L+R   
Sbjct: 238 YEIQEQLIRKFI 249


>gi|238810161|dbj|BAH69951.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 307

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 100/252 (39%), Gaps = 15/252 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DSM LL        + ++ K     + +++  R  +  +V  V + C +  I
Sbjct: 14  ILGISGGPDSMLLLH-------EYAYKKEPIFVVCINYNQRMDSHKDVEIVENYCKQNFI 66

Query: 83  AHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            + + ++     +TG     AR+ R  +  ++    NA+ I+ AH  DD LE+ +M+   
Sbjct: 67  DYQIYNFDQKDYKTGNFEEWARDKRMEIFIQNYHEKNASKILLAHHKDDFLESFFMQKVA 126

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                     G+  T +Y     I RPF+    +++I     +  + +  D +N    + 
Sbjct: 127 KRKPS---FWGIKKTNIY-KGCLIERPFIDKYFKDEILEKCKKLKLDYAIDYTNELPIYT 182

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           R + R  ++ +        + +  +   ++          + +   + I        ++D
Sbjct: 183 RNKFRLKLKKLTNEEKQKIIDEVNEKNKELEWLEKEFNKAFASW--KKIEFKVNYYKDLD 240

Query: 261 STLLFYLLRVSA 272
             +   L+R   
Sbjct: 241 YEIQEQLIRKFI 252


>gi|38234568|ref|NP_940335.1| hypothetical protein DIP2004 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200831|emb|CAE50535.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 280

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 118/312 (37%), Gaps = 33/312 (10%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  VR+ V P  I V +SGG+DS+ L+ AL +             A+ VDH L+  + 
Sbjct: 2   ACRVAVRT-VQPRDITVGLSGGADSLALVAALCA-------EDYNVHALCVDHGLQPGSH 53

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +  +  +           ++S   +     L A AR ARY  +           ++  HT
Sbjct: 54  EVAQQAAHHARTFGAHAEIISVTVAP--GNLEANARTARYQALHS-----RNLPVVVGHT 106

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ + + R  A             ++  NLW  RP L  RR    +   +  I 
Sbjct: 107 ADDQAETLLLGALRGKA---------TGMQIHTDNLW--RPLLGVRRATTLAACTELGIE 155

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
              DP N +  F RV +R  V  +    +        D    ++ A  ++      +H+ 
Sbjct: 156 PWHDPHNANTDFLRVALRTQVVPLLSDIIG------GDAVPALSQAATLIAEDTHALHVD 209

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRV 307
           +       +  +   L    L       G ++S    R+++ ++     G++       +
Sbjct: 210 TPDDRIAQLAGMPPALRRRHLVALLQAYGARVSAAHLRAVDALITNWH-GQKAVPVGNGL 268

Query: 308 VIDRRANFLWIT 319
            + R+   L ++
Sbjct: 269 EVTRKDGRLSVS 280


>gi|154296481|ref|XP_001548671.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10]
 gi|150843338|gb|EDN18531.1| hypothetical protein BC1G_12815 [Botryotinia fuckeliana B05.10]
          Length = 627

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 151/473 (31%), Gaps = 125/473 (26%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDR----------SFGKIKFSAISVDHCLRETAKDEVR 71
           + +AVSGG DSM L      +  +             GKI F A+ V+H +R+ + +E +
Sbjct: 36  VGLAVSGGVDSMALAALCMQMKKNYIPFASDGYPIHLGKIDFRAVIVNHGVRDGSLEEAQ 95

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG------LMAAAREARYALISEHAKTINATLIMTA 125
            V  V   L +   +++    +            + AR+ R+  I ++ +  + + I+  
Sbjct: 96  KVMGVLESLGMTSRILTLPWKEITGNPSQLPNFESLARKYRFQAIGKYCQKSDISSILLG 155

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--------------------------- 158
           H  DDQ ETV MR  +    +G+GL G+  +                             
Sbjct: 156 HHADDQAETVLMRLAKGA--RGVGLLGIKSSSPIPECEGIYGVHESGNPITLALPIKSKQ 213

Query: 159 ---------------YDLNLWISRPFLRC--------------RREDIRSFLLQRNISWC 189
                              +    P L                 +E + +      + W 
Sbjct: 214 GTKWTNIIEKDDGDQPASGVLKIMPQLEVESGGITLYRPLLEFPKERLIATCKALGVEWF 273

Query: 190 EDPSNTDDR-FERVRVRRFVRDIDLHALYLKMK------KFQDLRVKVNNAVAMLIPKY- 241
           ED +N+D    +R  +R       L  +  K +      + Q+        V  LI +  
Sbjct: 274 EDNTNSDPTLTDRNAIRHLYDHSGLPMVLPKSRVLDFSAQLQNAENIRQQKVDQLIKQCK 333

Query: 242 ----------LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
                     L +   SI +++   +   S L   LLR         I+     S+ +V 
Sbjct: 334 VLSFDTRRGTLIMEFPSIPSVTPQDITNRSILAAMLLRRVIMT----ITPNSIVSLNQVS 389

Query: 292 LFLKS--------GKRGCVSIGRVVI--------DRRANFLWITRAVR---NLPTLI--- 329
             +           +   ++   ++         D   N   I R  R   +L   +   
Sbjct: 390 AAVPEIFPLPDVTTQPKTINTAGIMFQPFNVDRKDAGKNEWHIFRQPRYRSSLDETVVPE 449

Query: 330 LYPEETTVW---DGRYQFQNL---SDSLIQIGPQSYRKADVPSGIPPIIAQRA 376
           L P     W   D RY  Q     S     +  + + K D+P  +   + +R 
Sbjct: 450 LLPGTQPQWFLFDNRYWLQIHNEMSSKAGNLVVRFFNKEDIPK-LELSLDKRG 501


>gi|237786216|ref|YP_002906921.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385]
 gi|237759128|gb|ACR18378.1| cell cycle protein MesJ [Corynebacterium kroppenstedtii DSM 44385]
          Length = 381

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 114/331 (34%), Gaps = 48/331 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++  SGG+DS+ L+               +  A+ +DH L+  +       ++VC  L  
Sbjct: 62  IIGCSGGADSLSLVGCAIK-------QGWRVHAVVIDHGLQAGSAGVATRAANVCQALGA 114

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           +  VV      P+     AARE RY  + + A+      ++ AHT DDQ E++ +   R 
Sbjct: 115 SSQVVKV---SPREATETAAREERYRALGQVAQERGGLPVLVAHTGDDQAESLLLGLARG 171

Query: 143 YAEKGMGLSGMCDTILYD-----LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                  ++GM   + +          + RP L  RR++      +  I+   DP+NT  
Sbjct: 172 AGLG--SIAGMPPVLFHHPVVDAGATALGRPLLSIRRDNTIGACAELGITPWHDPTNTSG 229

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA------ 251
              R RVR  +       L             +       + +  T  ++          
Sbjct: 230 DNLRSRVRTQLIPQIRSVLGEGTVDNAIATAAMTRTDDDYLAQRATDALKECECHGSSVD 289

Query: 252 ----------ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV----------- 290
                          L     L   +++       G ++     +++ +           
Sbjct: 290 NSGSPESSGLDIATYLRQPQALRGRIIKQWLHHRAGPLTRAHVTAIDALATQWHGQGGVA 349

Query: 291 MLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
           + + ++        GR+++ RR + L +T  
Sbjct: 350 IPWARTPAPP----GRLLVVRRHDELQLTAE 376


>gi|94985096|ref|YP_604460.1| tRNA(Ile)-lysidine synthetase-like protein [Deinococcus
           geothermalis DSM 11300]
 gi|94555377|gb|ABF45291.1| tRNA(Ile)-lysidine synthetase-like protein and cytosine deaminase
           [Deinococcus geothermalis DSM 11300]
          Length = 539

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 87/252 (34%), Gaps = 28/252 (11%)

Query: 30  SDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW 89
           +DS+ LL AL  V +             +DH LR  +  +  +V  +   L +       
Sbjct: 30  ADSVALLRALVLVGAQP-------VTAHLDHALRPDSAQDAAWVQTLAEELGVPFEAARV 82

Query: 90  KNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145
             +         L  AAR  RY  +   A+   A  I+TAHT  DQ ETV +   R  A 
Sbjct: 83  DVAAVAARRGWNLEDAARRVRYEFLGRVARQHRAEAILTAHTRRDQAETVLLGLLRGEAV 142

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
                     T +  +   + RP+L   R D+ ++L      W ED +N D    R  +R
Sbjct: 143 L---------TGIPPIRGRVRRPWLDVSRADVEAWLRSLGQDWREDSTNADPAQTRAWLR 193

Query: 206 RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI-SQDILNIDSTLL 264
             V       L L   +F ++   +     +       +   +               +L
Sbjct: 194 TVV-------LPLLATRFPEVEASLVRVARLAQEDDAALRALAARLTPHAPRAAQPPAIL 246

Query: 265 FYLLRVSAAICG 276
              +  + A  G
Sbjct: 247 RRHVAQALADAG 258


>gi|227540926|ref|ZP_03970975.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227183186|gb|EEI64158.1| tRNA(Ile)-lysidine synthetase [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 270

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 111/298 (37%), Gaps = 32/298 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            V +SGG DS+ L  AL +         +  +A+ +DH L++ +++     + +      
Sbjct: 2   AVGLSGGPDSLALTAALVA-------EGVHVTALCIDHGLQDGSREVSEEAARIARSWGA 54

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              V+      P     +AAR+ARY   +E         +  AHT DD  ET  +   R 
Sbjct: 55  EARVIPINVDPPT---ESAARQARYRAFAEW-----GGPVCVAHTMDDLAETFLIAGLRG 106

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                    GM +T   +    I RP L  RR D  +   +  ++   DP N D  F RV
Sbjct: 107 MT------CGMRETAEVE-GAHIIRPLLAVRRTDTVATCAEIGVTPWHDPQNADRAFTRV 159

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
           RVRR V  +    +        D    +  A      +   +       +     ++   
Sbjct: 160 RVRREVLPLLGDIVG------GDAVPALAQAARRTQAEATRMTAT---TVPLATKDLPEA 210

Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
               ++  +    G ++S P    +++++     G+      G +V  R ++ + I  
Sbjct: 211 TRQDIIAGALRAAGAKVSKPHVEGVDKLLTEWH-GQGPRDVGGGLVALRVSDAIKIEE 267


>gi|310287911|ref|YP_003939169.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum S17]
 gi|309251847|gb|ADO53595.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum S17]
          Length = 372

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 82/342 (23%), Positives = 136/342 (39%), Gaps = 39/342 (11%)

Query: 5   PIESVRFFVRSLVYPAH----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           P +  RF       PA     +LVA SGG DSM L      V +      I+  A+ VDH
Sbjct: 24  PRQDPRFAEHGDHTPAPDAPLVLVACSGGRDSMALAAVAGIVCASWG---IRCGAVVVDH 80

Query: 61  CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            L+E + +  +  +  C  L +   +VV  + S     + AAAR+ARY  +++ A+  +A
Sbjct: 81  RLQEHSDEVAQSAARRCCGLGLDPVTVVPVEVSGDGHSVEAAARDARYRALADTARRESA 140

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++ AHT DDQ ETV M   R        L+GM   +  D  +  +RPFLR  R D   
Sbjct: 141 ACVLLAHTGDDQAETVLMDVLRSSGLD--SLAGMPRIVERD-GVRFARPFLRLTRADTTG 197

Query: 180 FLLQRNISWCEDPSNTD---------DRF-ERVRVRRFVRD-IDLHALYLKMKKFQD--- 225
                 I+W +DP+N D         D F  R RVR  +   ++  A    + +F D   
Sbjct: 198 ICEDLGITWWDDPTNGDHMAADEPLPDDFPLRSRVRHTLIPYLNAFAGGDIVSRFCDGAE 257

Query: 226 ----LRVKVNNAVAMLIPKYLTVHMRSIIAISQD----------ILNIDSTLLFYLLRVS 271
                +  ++     +    +T    S  ++  D          +      +   ++  +
Sbjct: 258 LASIEKSYLDGIAESVAAHAVTFAGDSCGSVDGDCELLRIDAKALAREPRAIRLRVIAHA 317

Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            A  G +       +++R++          +  G     R+ 
Sbjct: 318 LAAVGIEAGFHHVDAVDRLISQWHGQGAVALPSGHSAFRRKH 359


>gi|297192940|ref|ZP_06910338.1| tRNA(Ile)-lysidine synthetase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722655|gb|EDY66563.1| tRNA(Ile)-lysidine synthetase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 370

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 118/305 (38%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL       S   ++   I+VDH L++ +      V    + + 
Sbjct: 71  VLVACSGGADSMALASALAFEARKLS---VRAGGITVDHGLQDGSGMRAAEVVARLTAMH 127

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +            + G  AAAR+ARYA + + A+   A  ++  HT DDQ ETV +   R
Sbjct: 128 LDPVEAIAVRVGREGGPEAAARDARYAALDDAAERHGAAAVLLGHTRDDQAETVLLGLAR 187

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFL   R+  R   + +++   +DP N D  + R
Sbjct: 188 GSGIR--SLSGMAAVS--GTAGRYRRPFLHIDRQTARKACMVQSLPVWDDPHNADPAYTR 243

Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            R+R      +       +   + +   L     +A+        +        +    L
Sbjct: 244 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDSWAADVESSVRDESGRLECAKL 303

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314
            +    +   +   A I  G  +   +      +  L +G RG  +I   GRV   R+  
Sbjct: 304 YVLPPAVRRRVLRRAVIEAGAPAGSLFARHVEEVDRLITGWRGQGAINLPGRVEARRQGG 363

Query: 315 FLWIT 319
            L I 
Sbjct: 364 RLVIR 368


>gi|229489828|ref|ZP_04383685.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121]
 gi|229323338|gb|EEN89102.1| tRNA(Ile)-lysidine synthetase [Rhodococcus erythropolis SK121]
          Length = 325

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 106/279 (37%), Gaps = 21/279 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L+  ++VR +  +       +VA+SGG+DS+ L  A  +             A+ VDH 
Sbjct: 9   LLALRQAVRAWTVAFEPRRRAVVALSGGADSLALTAAAVAETD-------SVDALIVDHR 61

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           L++ +    R  +D    L    + V   +      L AAAREARY+ + +    +    
Sbjct: 62  LQDGSDAVARSAADQALALGCRTATVLTVDVAEGGSLEAAAREARYSALRDARTDLP--- 118

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G  + GM        +    RP L  RR   R+  
Sbjct: 119 VLLGHTLDDQAETVLLGLSRGSG--GRSIQGMAA-----FDAPWGRPLLGIRRSVTRAAC 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +   I+  EDP N +  F RVR+R      + +I    +   + +      +   A+   
Sbjct: 172 VDLGITPWEDPHNNNPEFTRVRLRHEALPLLEEILGGGVPEALARTATQLREDGEALDEY 231

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
               L   +         +    + +    LR      G
Sbjct: 232 AEALLLPVVVDGEVEVDTLAEAPTAIRRRALRAWLLQGG 270


>gi|21221833|ref|NP_627612.1| hypothetical protein SCO3406 [Streptomyces coelicolor A3(2)]
 gi|256786987|ref|ZP_05525418.1| hypothetical protein SlivT_21069 [Streptomyces lividans TK24]
 gi|289770880|ref|ZP_06530258.1| tRNA(Ile)-lysidine synthase [Streptomyces lividans TK24]
 gi|61217439|sp|Q9X8I6|TILS_STRCO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|4808345|emb|CAB42759.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289701079|gb|EFD68508.1| tRNA(Ile)-lysidine synthase [Streptomyces lividans TK24]
          Length = 352

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/307 (22%), Positives = 119/307 (38%), Gaps = 17/307 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           ++   ++VDH L+  +      V      L 
Sbjct: 53  VLVACSGGADSMALASALAFEAPRLG---VRAGGVTVDHGLQSGSDLRAEEVVLRLRELG 109

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +     +        G  AAAR+ARYA +   A    A  ++  HT DDQ ETV +   R
Sbjct: 110 LDPVEATAVTVGRAGGPEAAARDARYAALDAAAARHGAAAVLLGHTRDDQAETVLLGLAR 169

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFL+  R+  R   + +++   +DP N D  + R
Sbjct: 170 GSGIR--SLSGMAAVS--GAGGRYRRPFLQVDRQTARKACMVQSLPVWDDPHNADPAYTR 225

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-----ISQDI 256
            R+R         AL   + +      +++   A  +  +       +           +
Sbjct: 226 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWARQAEAGVRDATGGLECAKL 285

Query: 257 LNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
             +   +   +LR +A      GG +       ++R++   +   +G +++   V+ RR 
Sbjct: 286 YALPPAVRRRILRRAALEAGAPGGALFARHIEEVDRLITGWRG--QGAINLPGKVVARRQ 343

Query: 314 NFLWITR 320
               + R
Sbjct: 344 GGRLVIR 350


>gi|271970343|ref|YP_003344539.1| tRNA(Ile)-lysidine synthetase-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270513518|gb|ACZ91796.1| tRNA(Ile)-lysidine synthetase-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 337

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 104/248 (41%), Gaps = 11/248 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L     +LVA SGG+DS+ L   L  V        +    ++VDH L+E + 
Sbjct: 13  AVRHALDDLEPGDLVLVACSGGADSLALAAGLGFVAPR---AGLSAGLLTVDHGLQEGSP 69

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           D    V  +     +  +     +     G  AAAREARYA +SE A  + A  ++  HT
Sbjct: 70  DRAAGVVRLAPAFGLDPAEALSVSVGTSGGPEAAAREARYAALSEAAVRLGAAAVLLGHT 129

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R    +   L+GM             RP L   R    +      +S
Sbjct: 130 RDDQAETVLLRLARGSGTR--SLAGMPARA-----GLYRRPLLELGRRTTVAACAALGLS 182

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL-TVHM 246
             +DP N D R+ RVRVR  +       L   + +       +    A  +  +   V+ 
Sbjct: 183 PWDDPHNLDPRYTRVRVRERLLPAFEDELGPGVAEALARTADLCRDDADALDGWADAVYA 242

Query: 247 RSIIAISQ 254
           R++++ S 
Sbjct: 243 RAVVSDSA 250


>gi|325187233|emb|CCA21772.1| tRNA(Ile)lysidine synthase putative [Albugo laibachii Nc14]
          Length = 660

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 13/211 (6%)

Query: 7   ESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +S++ F+  ++ +    + V++SGG DSM L   LH V     +  I   AI +D+  R 
Sbjct: 207 KSIKRFLVNKNALSDTPVAVSLSGGVDSMVLAYLLHKVRLSSHYYGI--VAIHIDYGNRP 264

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +  E  YV   C RL I           +    +      AR+ RY+      +  +  
Sbjct: 265 ESAAECSYVKYWCDRLDIQFYARRIDEVTRGETKRDEYEKIARDIRYSTYRSILEKHSIP 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I   H   D  E V     +  +   + L+GM +T      + I RP L   +  I  F
Sbjct: 325 GICFGHHRGDVQENVVSNMMKGLSL--LSLNGMSETST-ANGVVIWRPMLEFDKSTIFDF 381

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
             +  I + +D +       R ++R  +  +
Sbjct: 382 AHRYGIPYFKDTTPAWS--TRGKLRNQLMPL 410


>gi|296118975|ref|ZP_06837548.1| tRNA(Ile)-lysidine synthase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968073|gb|EFG81325.1| tRNA(Ile)-lysidine synthase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 340

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 13/211 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+   +VR  +  L +P  + V +SGG+DS+ L+ AL    ++         A+ +DH 
Sbjct: 14  FLAVRGAVRESLEQLGWPEQVYVGLSGGADSLALVAAL---CAEVRVATTSVHALCIDHG 70

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINAT 120
           +++ + D  +  +    R     SV+  +  +    G+ A AR  RY   +E A  +  T
Sbjct: 71  VQDGSGDIAKQAAAHAERWGATASVIPVEVVRDSAGGMEAEARRVRYQAFAEVAGEM--T 128

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +  AHT +DQ ET+ + S R +       + +           I RP L  RR D    
Sbjct: 129 PVFVAHTAEDQAETLLLSSLRGHISTMAFATEI-------EGAKIYRPLLGIRRADTLGA 181

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
             +  +    DP N  + F RV +R+ V  +
Sbjct: 182 CAELGVQAWHDPQNEREDFRRVAIRKTVVPM 212


>gi|297181792|gb|ADI17972.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [uncultured Chloroflexi bacterium
           HF0200_09I09]
          Length = 351

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 111/296 (37%), Gaps = 31/296 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVSDVC 77
           + ++VA SGG DS   LIA+  V      G  +  A + DH LR       ++ +V  + 
Sbjct: 28  SPLIVACSGGPDSSAALIAVVRVRERAGGG--EVVAATFDHGLRPQVENDADIEFVQTLA 85

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++ +    V  K ++      AAAR+ARY  +   A  ++A   ++ HT +DQ ETV +
Sbjct: 86  GKMGV--RSVVGKATEGFGTSEAAARKARYIWLGRVALEMSARACVSGHTLNDQAETVLL 143

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNL----------WISRPFLRCRREDIRSF-----LL 182
           R  R     G           + L+            + RP L  RR++I  +     L 
Sbjct: 144 RLARGTGLTGASSMTNDAPWPFTLSGSTAGCDLPSLRLLRPLLNLRRQEIEEYLDALGLD 203

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNAVA 235
              ++   D SN    F R RVR  V             AL    ++ +   + +     
Sbjct: 204 AEGLNPRLDLSNETLEFSRNRVRHRVLPELRRLNPRVEEALAGFARRARRDDLALEAWAE 263

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
               + + V    ++     +  +   +   +LR +    G  +       +E + 
Sbjct: 264 AEWERLVYVGRSEVVIDRHSLYELPQAVAMRILRRAGKQLGLAL---DSSQLEALW 316


>gi|330942652|ref|XP_003306154.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1]
 gi|311316480|gb|EFQ85748.1| hypothetical protein PTT_19210 [Pyrenophora teres f. teres 0-1]
          Length = 644

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 33/242 (13%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RLRIA 83
           A+SGG DSM L  AL+           K  A  VDH +R  + +E  +V+     +L + 
Sbjct: 14  AISGGVDSMALA-ALYKEAQSLDDCLSKPHAFIVDHKVRPESTEEAEWVAQELRSKLGME 72

Query: 84  HSVV--SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            +++  +W++          AR  RY  +    + +  T +M  H  DDQ ETV MR   
Sbjct: 73  STILPLTWRDEFDSKRFETEARTLRYQALGRACRDMKITSLMVGHHADDQAETVMMRLSN 132

Query: 142 DYAEKGMGLSGMCDTIL---------------------------YDLNLWISRPFLRCRR 174
                G+      + I                                + + RP L   +
Sbjct: 133 HRLRSGLQAMQRVEWIPECEGIYGVYHSGRVQKPNPDLDMPFPVEQGGIQVLRPLLGFEK 192

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
             + +   ++ + W ED +N       R  +R   ++  L    L +    +L V++   
Sbjct: 193 ARLIATCEEKKVGWAEDQTNQIQSLTSRNAIRHLYKNYKLPE-ALSVPSLVELSVRMQER 251

Query: 234 VA 235
           + 
Sbjct: 252 IK 253


>gi|323142054|ref|ZP_08076902.1| tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067]
 gi|322413441|gb|EFY04312.1| tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp. YIT 12067]
          Length = 328

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 128/326 (39%), Gaps = 25/326 (7%)

Query: 8   SVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ET 65
            +R  +++L+ P AH L+AVSGG+DS+      H+  +  + G   +S   V+H LR E 
Sbjct: 10  KLRKTIKNLLQPEAHYLLAVSGGADSL---ALAHACAALAAQGWGSYSVCHVEHGLRGEE 66

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATL 121
           A  +++ V   C    +       + +    + +     AAR  RYA +   A+   A  
Sbjct: 67  ALRDMQAVQRACKDWGLPCFTEHVQAASYAAQNRLSTEDAARRLRYAALRRIAEQQGAAA 126

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+TAH   DQ ET+ +R  R    +G+                I RP L   +  +  + 
Sbjct: 127 IVTAHHEGDQAETLLLRLLRGAGLQGLAGM-------RAQQDDIIRPLLTLPKSLLEEYC 179

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKMKKFQDLRVKVNNA 233
               I+ C D +N D  + R RVR  +            +  L             +   
Sbjct: 180 SAEGIAVCYDSTNADTAYTRNRVRLELVPYLERSFNHNVVPTLARTAALLAQDAECLEQM 239

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGG-QISLPGYRSMERVML 292
                 + +     ++      +  + S +   +LR +    GG ++S    ++++ +++
Sbjct: 240 ADDAYRQLVRRQENAVSLPVTQLTALHSAVRLRVLRRAYFELGGEELSFERSQAIDSLLI 299

Query: 293 FLKSGKRGCVSIGRVVIDRRANFLWI 318
               GK   +  G  V+ +    +++
Sbjct: 300 RRSGGKFIQLPQGINVVYKNKQLIFV 325


>gi|117927411|ref|YP_871962.1| tRNA(Ile)-lysidine synthetase [Acidothermus cellulolyticus 11B]
 gi|117647874|gb|ABK51976.1| tRNA(Ile)-lysidine synthetase [Acidothermus cellulolyticus 11B]
          Length = 398

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 5/212 (2%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L   A +L A SGG DS+  L A  +  + R    ++  A+++DH L+  + 
Sbjct: 22  AVRTCLADLPAGALVLAACSGGPDSLA-LAAALAFEAPRRRPALRAGAVTIDHQLQPGSA 80

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +  R ++     L +    +         G  AAAR ARYA + E A    A  ++ AHT
Sbjct: 81  ERARQLARFLGELGLDPVEIRAVQVGRDGGPEAAARAARYAALDEVAAQCGAAAVLLAHT 140

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R    +   ++GM +   +       RP L   R   R       + 
Sbjct: 141 LDDQAETVLLGLTRGSGLR--SIAGMPER--FGPADRYRRPLLGIPRSVTRRACRDAGLP 196

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           + +DP N D  F R R+R  V  +    L  +
Sbjct: 197 FWDDPQNHDPAFTRSRLRHRVLPVLRAELGPQ 228


>gi|291277350|ref|YP_003517122.1| putative tRNA(Ile)-lysidine synthase TilS [Helicobacter mustelae
           12198]
 gi|290964544|emb|CBG40397.1| putative tRNA(Ile)-lysidine synthase, TilS [Helicobacter mustelae
           12198]
          Length = 331

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 74/204 (36%), Gaps = 15/204 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F++ L      L+  SGG DS  L   L     D   G        VD+ LRE +  EV 
Sbjct: 3   FLQDL-EGKKNLLGFSGGPDSTALFFCLLEEGIDFDMG-------IVDYGLREQSIKEVA 54

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           Y  ++ +  +    +               AR  RY       K      ++ AH  +D+
Sbjct: 55  YAKELAACYQKRLFIHQALGIVRD--FEHQARVQRYGFFERIIKEEGYENLLLAHHLNDR 112

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LE   M+  +        L G       +    I RP L   ++ I   + +R   + ED
Sbjct: 113 LEWFIMQLCKGSGLN--NLLGFRRREERE-GYVIVRPLLEISKDQILEMVRKR--VYFED 167

Query: 192 PSNTDDRFERVRVRRFVRDIDLHA 215
            SN + R  R ++R+   +  +  
Sbjct: 168 SSNENTRIWRNKIRKNYANSLIQE 191


>gi|224283823|ref|ZP_03647145.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium bifidum NCIMB 41171]
 gi|313140977|ref|ZP_07803170.1| tRNA(Ile)-lysidine synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|313133487|gb|EFR51104.1| tRNA(Ile)-lysidine synthase [Bifidobacterium bifidum NCIMB 41171]
          Length = 372

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 137/342 (40%), Gaps = 39/342 (11%)

Query: 5   PIESVRFFVRSLVYPAH----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           P +  RF       PA     +LVA SGG DSM L      V +      I+  A+ VDH
Sbjct: 24  PRQDPRFAEHGDHTPAPDAPLVLVACSGGRDSMALAAVAGIVCASWG---IRCGAVVVDH 80

Query: 61  CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            L+E + +  +  +  C  L +   +VV  + S    G+ AAAR+ARY  +++ A+  +A
Sbjct: 81  RLQEHSDEVAQSAARRCCGLGLDPVTVVPVEVSGDGHGVEAAARDARYRALADTARRESA 140

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++ AHT DDQ ETV M   R        L+GM   +  D  +  +RPFLR  R D   
Sbjct: 141 ACVLLAHTGDDQAETVLMDVLRSSGLD--SLAGMPRIVERD-GVRFARPFLRLTRADTTG 197

Query: 180 FLLQRNISWCEDPSNTD---------DRF-ERVRVRRFVRD-IDLHALYLKMKKFQD--- 225
                 I+W +DP+N D         D F  R RVR  +   ++  A    + +F D   
Sbjct: 198 ICEDLGITWWDDPTNGDHMAADEPLPDDFPLRSRVRHTLIPYLNAFAGGDIVSRFCDGAE 257

Query: 226 ----LRVKVNNAVAMLIPKYLTVHMRSIIAISQD----------ILNIDSTLLFYLLRVS 271
                +  ++     +    +T    S  ++  D          +      +   ++  +
Sbjct: 258 LASIEKSYLDGIAESVAAHAVTFAGDSCGSVDGDCELLRIDAKALAREPRAIRLRVIAHA 317

Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            A  G +       +++R++          +  G     R+ 
Sbjct: 318 LAAVGIEAGFRHVDAVDRLISQWHGQGAVALPSGHSAFRRKH 359


>gi|226294081|gb|EEH49501.1| PP-loop family protein [Paracoccidioides brasiliensis Pb18]
          Length = 690

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/299 (18%), Positives = 103/299 (34%), Gaps = 76/299 (25%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+ I +AVSGG DSM L      ++S+R    +      VDH  RE + +E   V+   
Sbjct: 38  KPSRIALAVSGGPDSMALAFLCKQLISERLIPDLNVKPFIVDHKAREGSTEEAHNVASWL 97

Query: 78  SRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             L    S+++ + +        +    +AR+ RY ++    K  N   +   H  DD +
Sbjct: 98  KDLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTV 157

Query: 133 ETVYMRSQR--------------DYAEKGMGLSGMCDTILY------------------- 159
           ETV  R  R               +  +  G+ G+ ++  +                   
Sbjct: 158 ETVLSRLVRGQRQASGFTGVASVGHIPECHGIYGLAESGSFIKLKNVKSRIDPAGRHPVH 217

Query: 160 -------------------------------DLNLWISRPFLRCRREDIRSFLLQRNISW 188
                                          D  +++ RPF    +  + S  LQ NI +
Sbjct: 218 DRERPDESQLKQAWGINSNTPHSNDILLPISDGGIYLFRPFSSFPKSRLTSTCLQNNIKF 277

Query: 189 CEDPSNTDDRFE-RVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
             D +N D     R  +R  +      R +   ++   ++  + +  ++N    + + K
Sbjct: 278 AIDKTNFDPTVTSRNTLRYLLSNDMLPRALRAPSILQLIENSKQVSEELNRQSNIFLRK 336


>gi|326434347|gb|EGD79917.1| hypothetical protein PTSG_10199 [Salpingoeca sp. ATCC 50818]
          Length = 666

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/205 (23%), Positives = 76/205 (37%), Gaps = 9/205 (4%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M L+  +   L     G  +  A+ VDH LR  + +E   V+       +A  V      
Sbjct: 1   MALVSLVKHAL-----GADRLRAVIVDHRLRHESTEEAHQVAAYLQGQGVAAHVEHLAWR 55

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
                    AR  RY  +   A T     IMT H  DD  ET+ +R  R  +  G+    
Sbjct: 56  VNDKHTQEMARHKRYHALGHAATTHGCRHIMTGHHADDVAETLVLRCLRQSSVHGLAAMR 115

Query: 153 MCDTILYDL---NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRFERVRVRRFV 208
               + Y      L ++RP L   + ++  +     I W EDP+N D  ++ R  +R  +
Sbjct: 116 EVQPLYYAHAFEPLLLTRPLLAVGKRELELYCRDNGIWWVEDPTNRDATKYTRNSIRHAL 175

Query: 209 RDIDLHALYLKMKKFQDLRVKVNNA 233
             +          + +  R  V  A
Sbjct: 176 AALQEDEQQEHGDRQEGNRECVGEA 200


>gi|294790630|ref|ZP_06755788.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304]
 gi|294458527|gb|EFG26880.1| tRNA(Ile)-lysidine synthase [Scardovia inopinata F0304]
          Length = 474

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 8/178 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS+ L      V +      ++  A+ VDH L+  +    +  ++ C+   
Sbjct: 45  VLVACSGGRDSLALAYTAKIVCASLG---VRCGAVIVDHHLQTGSGLVAQKAAEQCTAYG 101

Query: 82  IAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +A   +   +  + + GL + AR+AR+  +   A    A++ + AHT  DQ ET+  R  
Sbjct: 102 LAPVLIRRAQVHRTRAGLESDARDARFLQLISAAHDEAASVTLLAHTMSDQAETILFRFL 161

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197
           R+ +     L+GM  T +    +  +RPFL    R++     LQ  I W +DP+N D+
Sbjct: 162 RNPSI--TALAGM-QTFIRREGVLFARPFLQGLTRQETTDLCLQAGIQWWDDPTNADN 216


>gi|86742988|ref|YP_483388.1| hypoxanthine phosphoribosyltransferase [Frankia sp. CcI3]
 gi|86569850|gb|ABD13659.1| hypoxanthine phosphoribosyltransferase [Frankia sp. CcI3]
          Length = 595

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 105/272 (38%), Gaps = 13/272 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  V  L     +LVA SGG DS+ L  AL  V   R+   ++   ++VDH     + 
Sbjct: 43  AVRRAVTDLPPGGLVLVACSGGPDSLALAAALAFVAPRRA---LRAGMVTVDHGWDTGST 99

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +    V+     L +    V  +++    G+   AR A    I+  A  + A  ++  HT
Sbjct: 100 ERAERVARQGRALGLDPVEVLTEHTARSEGIARQARRA---AIAAAADRLGARAVLLGHT 156

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R    + +G            +  +SRP L  RR D R+  L   + 
Sbjct: 157 LDDQAETVLLRLARGAGARSLGGMS-------ADDGLLSRPLLGIRRADTRAACLAEGLE 209

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
             +DP+N D  F R RVR  V  +    L   + +       +  A A  +         
Sbjct: 210 VWDDPTNRDPAFTRSRVRHTVLPVMETELGPGIAESLARSADLLRADADALDAMAAEVYG 269

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
            ++         +       L    A   G++
Sbjct: 270 KVVRARGRPCTGEVAFDVAALAGLTAAVRGRL 301


>gi|311064792|ref|YP_003971517.1| tRNA(Ile)-lysidine synthetase TilS [Bifidobacterium bifidum
           PRL2010]
 gi|310867111|gb|ADP36480.1| tRNA(Ile)-lysidine synthetase TilS [Bifidobacterium bifidum
           PRL2010]
          Length = 372

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 137/342 (40%), Gaps = 39/342 (11%)

Query: 5   PIESVRFFVRSLVYPAH----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           P +  RF       PA     +LVA SGG DSM L      V +      I+  A+ VDH
Sbjct: 24  PRQDPRFAEHGDHTPAPDAPLVLVACSGGRDSMALAAVAGIVCASWG---IRCGAVVVDH 80

Query: 61  CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            L+E + +  +  +  C  L +   +VV  + S    G+ AAAR+ARY  +++ A+  +A
Sbjct: 81  RLQEHSAEVAQSAARRCCGLGLAPVTVVPVEVSGDGHGVEAAARDARYRALADTARRESA 140

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++ AHT DDQ ETV M   R        L+GM   +  D  +  +RPFLR  R D   
Sbjct: 141 ACVLLAHTGDDQAETVLMDVLRSSGLD--ALAGMPRIVERD-GVRFARPFLRLTRADTTG 197

Query: 180 FLLQRNISWCEDPSNTD---------DRF-ERVRVRRFVRD-IDLHALYLKMKKFQD--- 225
                 I+W +DP+N D         D F  R RVR  +   ++  A    + +F D   
Sbjct: 198 ICEDLGITWWDDPTNGDHMAADEPLPDDFPLRSRVRHTLIPYLNAFAGGDIVSRFCDGAE 257

Query: 226 ----LRVKVNNAVAMLIPKYLTVHMRSIIAISQD----------ILNIDSTLLFYLLRVS 271
                +  ++     +    +T    S  ++  D          +      +   ++  +
Sbjct: 258 LASIEKSYLDGIAESVAAHAVTFAGDSCGSVDGDCELLRIDTKALAREPRAIRLRVIAHA 317

Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            A  G +       +++R++          +  G     R+ 
Sbjct: 318 LAAVGIEAGFRHVDAVDRLISQWHGQGAVALPSGHSAFRRKH 359


>gi|304437099|ref|ZP_07397062.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370050|gb|EFM23712.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 474

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/321 (21%), Positives = 111/321 (34%), Gaps = 30/321 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 +L A SGG+DS+ LL  L  +    + G  +      +H +R  A         
Sbjct: 26  FAPDRRVLAACSGGTDSLVLLDILRDL---HAAGGPQIICAHYEHGIRGAASRADADAVA 82

Query: 76  VCSR-LRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                  I   +    V       +  L  AAR  RY  +    +  +  +I  AH  DD
Sbjct: 83  AYCAARDIPCIIEAGDVPRYARTHKLSLETAARVCRYDFLHRLQEQEHCDVIALAHHADD 142

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV MR  R     G+      D +         RP L   R +I  ++    +  C 
Sbjct: 143 LAETVLMRILRGTGPAGLAAMREWDGVH-------LRPLLHTARTEIERYIRTHELHPCH 195

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D +N     +R R+R  +    L  L     +     +   + +A     +LT +  + +
Sbjct: 196 DLTNDQQDAQRNRIRHTL----LPTLCTYGNRNIRDALVRLSVLAGEEDDFLTQYAAAEL 251

Query: 251 A-------ISQDILN-IDSTLLFYLLRV-SAAICGGQISLPGYRSMERVMLFLK-SGKRG 300
                   +S  +LN + + ++  +LR+    +  GQ  L  Y   ER+   L   G   
Sbjct: 252 ERASSGGGLSVGVLNTLHTAMVRRVLRLFWERVTAGQQDL-SYEHEERMRRLLMLVGTAQ 310

Query: 301 CVSIGRVVIDRRANFLWITRA 321
           C          R   L + R 
Sbjct: 311 CELPHGWRARLRYGVLRLQRE 331


>gi|148652148|ref|YP_001279241.1| tRNA(Ile)-lysidine synthetase [Psychrobacter sp. PRwf-1]
 gi|172048461|sp|A5WCA0|TILS_PSYWF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|148571232|gb|ABQ93291.1| tRNA(Ile)-lysidine synthetase [Psychrobacter sp. PRwf-1]
          Length = 525

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 114/339 (33%), Gaps = 41/339 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            + +    + +A SGG DS+GL +   ++        +    I V+H ++    +  + V
Sbjct: 19  HAQLLGKRVWLACSGGRDSLGLALLCRTLFDQGRLPFLP-QLIHVNHGMQAANDEWAQQV 77

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +    +  +A  ++    +        AAR+ RY  + +        +++  H  DDQ+E
Sbjct: 78  AQWAQQHDMACQIIGLNLTHKS---EQAARDGRYQAMMQLMNQ--DDVLILGHHQDDQVE 132

Query: 134 TVYMRSQRDYAEKGMGLSGM------------CDTILYDLNLWISRPFLRCRREDIRSFL 181
           T+ MR        G+G                 D       +++ RP+L   R+ I  + 
Sbjct: 133 TLLMRLFNGAGVTGLGAMREWTSKQAHTAQSPPDVNKPRQRIFLWRPWLEISRDQITEYA 192

Query: 182 LQRNISWCEDPSN---------TDDRFERVRVRRFVR-------DIDLHALYLKMKKFQD 225
            + N+ + +DP+N              +R  +R  +             A+    +  Q 
Sbjct: 193 QRHNLKYIDDPTNVAQSPSKLALQTLNDRAWLRSVLLPHITERYPQASEAMARTAQLMQQ 252

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGY 284
               ++  V   + +           I+ D L  + +     L+    A    Q+     
Sbjct: 253 ASDSIDEQVTQDLAQVALAATEQQSVIALDKLAGLSAPRQAALIHHWLAPYPNQLPPSKR 312

Query: 285 RSMERVMLFLKSGKRGCVSIG------RVVIDRRANFLW 317
              E + L  +        +       +  + R  N L+
Sbjct: 313 LVDEVLALSFRQDSNHQTCLYFDAGSEQYQVRRYQNKLY 351


>gi|242310195|ref|ZP_04809350.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523492|gb|EEQ63358.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 327

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 15/198 (7%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F+  L   A  L+A S G+DS  L   L          +I F    VD+  R+ +K EV 
Sbjct: 5   FLDEL-KNAKNLLAFSSGTDSTALYFLLKEY-------EISFDIAIVDYGTRKQSKLEVS 56

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               +C         ++ K         A AR+ RY          +   ++ AH  +D 
Sbjct: 57  RAKSLCFWDNKKCYTLTTKPITK--NFEAEARKIRYDFFYTLTLQESYQNLILAHQLNDN 114

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYD---LNLWISRPFLRCRREDIRSFLLQRNISW 188
            E   M+  +  + + M +     ++ ++       I RP +   +  I+S+L +RNI +
Sbjct: 115 FEWFLMQFCKGSSVENMQIP--KKSLFWEESQRKCHILRPMISISKNQIKSYLQKRNIFY 172

Query: 189 CEDPSNTDDRFERVRVRR 206
            ED SN D  F R   R+
Sbjct: 173 FEDSSNLDIVFTRNYFRK 190


>gi|308175886|ref|YP_003915292.1| tRNA(Ile)-lysidine synthase [Arthrobacter arilaitensis Re117]
 gi|307743349|emb|CBT74321.1| putative tRNA(Ile)-lysidine synthase [Arthrobacter arilaitensis
           Re117]
          Length = 308

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 17/258 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   L+ +SGG           ++    +    +F A+ VDH L+  +    +     C 
Sbjct: 18  PGLNLIGISGG-------ADSLALAIAAATLPGRFGAVIVDHSLQAGSAQAAQRAGQQCR 70

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
            L +   ++S   + P     A+AR+ARY    +     +A  +M AHT DDQ E V + 
Sbjct: 71  ELGLNPVLISEVETSPD---EASARDARYQAFDQALAQFDADTLMLAHTRDDQAEQVLLG 127

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   L+GM             RP L   R           I + +DPSN D  
Sbjct: 128 LVRGSGTR--SLAGMPAQR-----GAYRRPLLELSRAQTEEICRHAGIEYWDDPSNADTG 180

Query: 199 FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
           ++R  +R  +       L   +++       +  A A  +  +             ++  
Sbjct: 181 YKRNLIRHRILPFLEQELGTHLRQALARTANLAAADAQALDHWAQKAKDEHGLQLPELRK 240

Query: 259 IDSTLLFYLLRVSAAICG 276
           +   +   +LR+ A   G
Sbjct: 241 LPVAVSSRVLRLGAMEAG 258


>gi|300934617|ref|ZP_07149873.1| cell cycle protein MesJ [Corynebacterium resistens DSM 45100]
          Length = 344

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 97/262 (37%), Gaps = 16/262 (6%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V +SGG+DS+ LLI             ++  A+ VDH L++ ++            L  
Sbjct: 2   VVGLSGGADSLALLIVAIRF-------GMEVHAVIVDHGLQDGSEQVAETARQQAEDLGA 54

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           A +       + +    A AR ARY  + + AK      ++ AHT  D  E V +   R 
Sbjct: 55  ASA--RVIAVQCRADDEAQARAARYEALGQIAK---GKPVLVAHTASDDAEGVLLSLARG 109

Query: 143 YAEKGMGLSGMC---DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                +           +++    W+ RP L C R        + N+SW EDP N   R+
Sbjct: 110 SGLDALAGMRAATRDHPVVHAGAGWLGRPLLMCDRAATELVCREANVSWWEDPHNRSSRY 169

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-ISQDILN 258
            R  VR  +       L            +   A +  +       ++++ +  S++  +
Sbjct: 170 LRSCVRHKLMPQVTDVLGEHAPDALARSARQFRADSDALWAIAKKELQAVASGASKNRNS 229

Query: 259 IDSTLLFYLLRVSAAICGGQIS 280
             S L    L    A   G+I 
Sbjct: 230 KKSNLNCAKLAELPAAVRGRIY 251


>gi|56750421|ref|YP_171122.1| hypothetical protein syc0412_c [Synechococcus elongatus PCC 6301]
 gi|56685380|dbj|BAD78602.1| hypothetical protein YCF62 [Synechococcus elongatus PCC 6301]
          Length = 283

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 93/272 (34%), Gaps = 18/272 (6%)

Query: 39  LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL 98
           +  +   +       +    DH  R  +     ++  +  + ++                
Sbjct: 1   MQLLRGLQPHWHWSLAIAHCDHGWRSDSTANAEHLRQLADQWQLPFYCQRSPEPPRS--- 57

Query: 99  MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
            AAAR  RY ++   A  I+A L++T HT  D+ ET+     R    +G  L+ +     
Sbjct: 58  EAAARTWRYQVLEAIAADIDAALLVTGHTASDRAETLLYNLTRGSHLQG--LASLRWQRS 115

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR-------RFVRDI 211
               L + RPFL   R +    + Q  +   ED +N D RF R R+R       R +   
Sbjct: 116 LSDRLTLVRPFLGFTRAETSKMVQQFQLPVWEDSTNRDRRFARNRLRLEVLPQLRQINPQ 175

Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
               L    +   D    +      +  + L+        ++Q  + +   +L   L+  
Sbjct: 176 CDRHLANTAELLADEADWLAELTEQVYQQSLSERGLCRSQLAQQPIALQRRVLHAFLQDQ 235

Query: 272 AAICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
                     P    +E +   + + +  C S
Sbjct: 236 LQRS------PSTVQVEELRQLITAPQGSCSS 261


>gi|328883305|emb|CCA56544.1| tRNA(Ile)-lysidine synthetase [Streptomyces venezuelae ATCC 10712]
          Length = 335

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 123/305 (40%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           ++   I+VDH L++ +      V    + L 
Sbjct: 36  VLVACSGGADSMALASALAFEARKL---PVRAGGITVDHGLQDGSDTRAGEVVGRMTALG 92

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +  S         + G  AAAR+ARYA +   A+   A  I+  HT DDQ ETV +   R
Sbjct: 93  LTPSEAVAVTVGREGGPEAAARDARYAALDAAAERHGAAAILLGHTRDDQAETVLLGLAR 152

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM    +   +    RPFL+  R+ +R   + + ++  +DP N+D  + R
Sbjct: 153 GSGIR--SLSGMAA--ISGASGRYRRPFLQLDRQTVRKACVAQELAVWDDPHNSDPAYTR 208

Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            R+R      +       +   + +   L     +A+        T       A+    L
Sbjct: 209 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAADAETSVRDEAGALECAKL 268

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314
           +     +   +   A I  G  +   +      +  L +G RG  +I   GRV   R+  
Sbjct: 269 HGLPPAVRRRVLRRAVIAEGAPAGSLFARHIEEVDRLITGWRGQGAINLPGRVEARRQGG 328

Query: 315 FLWIT 319
            L I 
Sbjct: 329 RLVIR 333


>gi|283797945|ref|ZP_06347098.1| PP-loop family protein [Clostridium sp. M62/1]
 gi|291074411|gb|EFE11775.1| PP-loop family protein [Clostridium sp. M62/1]
 gi|295091863|emb|CBK77970.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Clostridium cf. saccharolyticum K10]
          Length = 241

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 14/215 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I V +SGG DS+ LL AL  +            AI+VD         E     + C
Sbjct: 22  SGDKIAVGLSGGKDSLALLYALKHIQKFYP-KSFDLCAITVDLGF-GNFNLEAA--QEFC 77

Query: 78  SRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           S L + +++V  + S      + ++   A   + R   +++ AK +    I  AH  DD 
Sbjct: 78  SSLCVPYTIVPTEISQVVFETRKESNPCALCAKMRKGALNQAAKNLGCNKIAYAHHRDDL 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T+ +        +G   S    T L  ++L++ RPFL     DI  F  + ++  C++
Sbjct: 138 IDTMLLSLI----YEGRFHSFSPKTYLDRMDLFVIRPFLYIPEADIIGFKNRYSLPVCKN 193

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           P   D + +R  V++ ++ I++ A  +K + F  +
Sbjct: 194 PCPVDGKTKREYVKQLIKTINMEASGVKDRLFHAI 228


>gi|118469721|ref|YP_890332.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2
           155]
 gi|118171008|gb|ABK71904.1| tRNA(Ile)-lysidine synthetase [Mycobacterium smegmatis str. MC2
           155]
          Length = 322

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 90/269 (33%), Gaps = 26/269 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V      VA+SGG DS+ L     +            +A+ VDH L+  ++         
Sbjct: 21  VDGERWCVALSGGPDSLALTAVAAAERPT--------TALIVDHGLQTGSRAVAETARAQ 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
              +    + +         G  AAAR+ARY  +       +   ++  HT DDQ ETV 
Sbjct: 73  ALSVGCVGAEIIPVVVGRSGGPEAAARKARYTALQAAR---DGAPVLLGHTLDDQAETVL 129

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R    + +      D   +       RP L  RR    +   +  +    DP N +
Sbjct: 130 LGLARGSGPRSIAGMRPHDPPWH-------RPLLGIRRTVTHAACEELGLKPWHDPHNFE 182

Query: 197 DRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            RF R R+R  V  +           AL       ++    ++      +    T     
Sbjct: 183 PRFTRTRLRLDVMPLLEEVLGGGVAEALARTATALREDTETLDEIARQALETSQTSARTP 242

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGG 277
               ++ +  +   +   ++R      GG
Sbjct: 243 PGLDTEVLAGLPGAVRRRVIRAWLLTNGG 271


>gi|134097007|ref|YP_001102668.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338]
 gi|291006247|ref|ZP_06564220.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338]
 gi|133909630|emb|CAL99742.1| cell cycle protein MesJ [Saccharopolyspora erythraea NRRL 2338]
          Length = 330

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 108/309 (34%), Gaps = 16/309 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG+DS+ L  A   V   R    I    + VDH L+E + D     ++    L 
Sbjct: 32  VAVACSGGADSLALAAATTHVARRR---DIAVHGLVVDHGLQEGSADVASRAAEQLEELG 88

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
                V       + G  AAAR A     +  A       ++  HT DDQ ETV +   R
Sbjct: 89  CDVVRVLPVEIGREGGPEAAARRA--RYAALDAARPAGAPVLLGHTRDDQAETVLLGLGR 146

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               + +            ++L   RPFL   R+   +      +   +DP N+D +F R
Sbjct: 147 GSGARSIAGM-------RPVDLPWLRPFLDVTRDTTLAACEALGLRPWQDPHNSDAKFTR 199

Query: 202 VRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKYLTVHMR---SIIAISQDIL 257
           VR+R  V  +    L   +        V++      L      V  R        +  + 
Sbjct: 200 VRLRAEVLPLLEEVLQGGVASALARTAVQLREDADALDEVAADVRKRVEDGDALDAAALS 259

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLW 317
                +   +LR      G +     +      ++    G+      G  V+ R    L 
Sbjct: 260 AGPPAVRRRVLRGWLLDQGVREVSDAHLRAADALVGHWKGQGPHALPGGFVLRRTHGTLR 319

Query: 318 ITRAVRNLP 326
           +  AV+  P
Sbjct: 320 VEVAVKQPP 328


>gi|256826669|ref|YP_003150628.1| tRNA(Ile)-lysidine synthetase [Cryptobacterium curtum DSM 15641]
 gi|256582812|gb|ACU93946.1| tRNA(Ile)-lysidine synthetase [Cryptobacterium curtum DSM 15641]
          Length = 378

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 102/301 (33%), Gaps = 51/301 (16%)

Query: 14  RSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71
           R+LV P   +L+ VSGGSDS  L      + +    G +    + V+HCLR  A D +  
Sbjct: 18  RALVLPDQPVLLMVSGGSDSTALAYLTSDLSAAGRVGPLAL--VHVNHCLRGDASDGDAA 75

Query: 72  YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATL------ 121
           +V  +   L + +            +    L A AR  RYA   E      A L      
Sbjct: 76  FVRHLAEALELPYFQYDIDIAALVEQTGENLEAVARSERYAAAQEALSNFCAQLNFPTSS 135

Query: 122 --IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I  AHT +D++E  YMRS       G          +  +N  I RP L   R+D+R 
Sbjct: 136 GRIFVAHTRNDRVENFYMRSIVGCGPGGF-------RSMRYINGCIVRPLLDVSRDDLRD 188

Query: 180 FLLQRNIS-----------------WCEDPSNTDDRFERVRVRRFV-------RDIDLHA 215
           +L +R +                  W ED +N      R  VR  +           L  
Sbjct: 189 YLRRRALDAQNDASVVLVRDKDGSLWREDATNAHTDRFRAYVRTTMVPAALERNPRVLEV 248

Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN----IDSTLLFYLLRVS 271
           L   M    D    +      ++   +         I          I   + F +L+  
Sbjct: 249 LCRTMNLIADEDDMLAEMAEHIMTSDVQWRDDETCLIKPSFAQHQQPIQRRVAFQILQRL 308

Query: 272 A 272
            
Sbjct: 309 L 309


>gi|270289038|ref|ZP_06195340.1| MesJ/Ycf62 family protein [Chlamydia muridarum Weiss]
          Length = 283

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 13/219 (5%)

Query: 50  KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARY 107
            I F+A+ VD+  RET+  E   ++ +C R +I   +   + + P   + +   AR+ RY
Sbjct: 8   GISFTAVHVDYGWRETSYQEACDLASLCEREQIPFILDRQEVANPMDFSDIENIARQYRY 67

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            L     K      +   H  DDQ ET+  R           L GM     Y   + + R
Sbjct: 68  ELFYRLCKERLFAGVFLGHHADDQAETILKRVFEGAHLG--NLKGMARYGTY-KGITLLR 124

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLK 219
           P L   +  I   L    I + +D +N D+RF R R+R  +               L   
Sbjct: 125 PLLHITKRQIVEALDNYRIEYVQDATNADERFLRARMREQLFPYLQEIFGKNIRQPLLFL 184

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN 258
            +   +LR  ++   A  + + +   +   + + Q++L 
Sbjct: 185 AEDSAELREYLDQQAAPFLSQVIDNEIGQFLPVGQELLQ 223


>gi|226226797|ref|YP_002760903.1| tRNA(Ile)-lysidine synthase [Gemmatimonas aurantiaca T-27]
 gi|259533720|sp|C1A873|TILS_GEMAT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226089988|dbj|BAH38433.1| tRNA(Ile)-lysidine synthase [Gemmatimonas aurantiaca T-27]
          Length = 468

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 75/301 (24%), Positives = 122/301 (40%), Gaps = 27/301 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +++AVSGGSDSM LL A+     DR          + DH     A D    V+    RL
Sbjct: 30  PLVLAVSGGSDSMALLFAMERWAPDRIAA-----VATFDHGTGSYATDAASLVAAHGRRL 84

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            +  +V+  +  +P     AA R+AR++ +   A+  +A  + TAHT DDQ ETV MR  
Sbjct: 85  GL--TVIRERARRPGVN-EAAWRDARWSFLQRVARGFHAR-VATAHTRDDQAETVVMRLL 140

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +G+                + RP+L   RE++  +L    + + EDP N    F 
Sbjct: 141 RGSGARGLAALAAPSP--------VVRPWLGVSREELTRWLASEGLPFLEDPMNASRYFL 192

Query: 201 RVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           R RVR  +             A+ L  ++    R +V   +       +  H     ++ 
Sbjct: 193 RARVRHELLPACEAASPGFRDAMLLIGERAARWRREVEQYLDQA--GLVVEHAGRSASLP 250

Query: 254 QDILNIDSTLLFYLL-RVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
            ++L   +     +L    +A  G  +   G R+  R     + G    V+ G  ++  R
Sbjct: 251 VEVLEQTTPEGQAVLWAALSARAGVTLDAHGTRAAVRFTSSRRRGAYITVAGGAAIMRTR 310

Query: 313 A 313
            
Sbjct: 311 R 311


>gi|34558077|ref|NP_907892.1| hypothetical protein WS1770 [Wolinella succinogenes DSM 1740]
 gi|61217316|sp|Q7MR31|TILS_WOLSU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|34483795|emb|CAE10792.1| conserved hypothetical protein-Predicted ATPase of the PP-loop
           superfamily implicated in cell cycle control [Wolinella
           succinogenes]
          Length = 326

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 76/214 (35%), Gaps = 15/214 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+  SGG DS  L   L          +I F    V++  R  AK+E  Y  ++  R
Sbjct: 16  GKNLLGFSGGVDSTALFFLLLE-------REIPFDIALVNYHQRAQAKEEESYAKELAHR 68

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +     +S       +     AR  RY              ++ AH   D+LE + MR 
Sbjct: 69  HQKRCFTLSCPLGP--SNFEHQARLERYRFFESLIHQEGYARLLLAHHLGDRLEWLLMRL 126

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            +  +     L G     +  L   + RP     +E +  +L Q  I + ED SN D + 
Sbjct: 127 AQGSSL--STLLGFSSREIR-LGYELIRPLGEITKEALYDYLHQHQIRYFEDESNRDPKP 183

Query: 200 ERVRVR---RFVRDIDLHALYLKMKKFQDLRVKV 230
            R R R     +       L    +  Q+ R  +
Sbjct: 184 LRNRFRPLSETLLKEHAQGLLQSFRFLQEEREIL 217


>gi|254388634|ref|ZP_05003867.1| hypoxanthine phosphoribosyltransferase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813246|ref|ZP_06771889.1| tRNA Ile -lysidine synthetase [Streptomyces clavuligerus ATCC
           27064]
 gi|326441644|ref|ZP_08216378.1| tRNA(Ile)-lysidine synthase [Streptomyces clavuligerus ATCC 27064]
 gi|197702354|gb|EDY48166.1| hypoxanthine phosphoribosyltransferase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325845|gb|EFG07488.1| tRNA Ile -lysidine synthetase [Streptomyces clavuligerus ATCC
           27064]
          Length = 371

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 120/305 (39%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL       S   ++   I+VDH L++ +      V+   + + 
Sbjct: 72  VLVACSGGADSMALASALAFEARKLS---VRAGGITVDHGLQDGSALRAAEVAARLTAMG 128

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +     +        G  AAAR+ARYA + E A  + A  ++  HT DDQ ETV +   R
Sbjct: 129 LDPVEATAVCVGRDGGPEAAARDARYAALDEAADRLGAAAVLLGHTRDDQAETVLLGLAR 188

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFL+  R+  R   + +++   +DP NTD  + R
Sbjct: 189 GSGIR--SLSGMAAVS--GTRGRYRRPFLQIDRQTARKACMVQSLPVWDDPHNTDPAYTR 244

Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            R+R      +       +   + +   L     +A+                 +    L
Sbjct: 245 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAADAADAVRDETGQLECAKL 304

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314
                 +   +   A I  G  +   +      +  L +G RG  +I   GRV   R++ 
Sbjct: 305 YALPPAVRRRVLRRAVIEAGAPAGSLFARHVEEVDRLITGWRGQGAINLPGRVEALRQSG 364

Query: 315 FLWIT 319
            L I 
Sbjct: 365 RLVIR 369


>gi|302381981|ref|YP_003817804.1| PP-loop domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302192609|gb|ADL00181.1| PP-loop domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 409

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 144/375 (38%), Gaps = 23/375 (6%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL               +  AI+VDH L   A    R  ++    +        W+  
Sbjct: 1   MALLHI---AAGWARAAGRRLLAITVDHGLNPDAAAWSRRCAEAARAVGADWVERRWEGD 57

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
           KP TGL AAAR AR+ALI+E A+   A +++ AHT +D  E+ +MR  R     G+    
Sbjct: 58  KPATGLPAAARHARHALIAEAARDAGAKVVLIAHTANDIAESDWMR-ARGTMLGGLREWS 116

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                     L + RP +  RRED+R +L      W EDP N    F R + RR +  + 
Sbjct: 117 PSPAWPEGRGLMLLRPMVNERREDLRGWLRSAGEGWIEDPGNE--GFGRGKARRALLPLP 174

Query: 213 LHALYLKMKK--FQDLRVK---VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
                  +++  ++  RV+   +  +     P  L  H  ++ A S   L          
Sbjct: 175 EGEGLSVLERSDWERERVRGLALAGSHRNPSPFRLKAHRSALRASSALPLGEGFIWAGEA 234

Query: 268 LRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLP- 326
           L ++     G   LP    +  +   L  G     ++    I+   + + I R    L  
Sbjct: 235 LAMNLLCAAGHDRLPRSERLAALADRLAGGDPFTATLAGARIEASPDRMIIGREAGELKR 294

Query: 327 ----TLILYPEETTVWDGRYQFQNLS------DSLIQIGPQSYRKADVPSGIPPIIAQRA 376
                L L  +   VWDGRY+    +       +L ++   S     +   +PP   + A
Sbjct: 295 RPPGPLALDTDTPAVWDGRYEITACAAGWSVVPALGRLNRLSKADRALADTVPP-WGRGA 353

Query: 377 LSSMPSKEGGKPLLA 391
           L  +       P+LA
Sbjct: 354 LPVLIRDGSDAPVLA 368


>gi|325961732|ref|YP_004239638.1| tRNA(Ile)-lysidine synthetase [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323467819|gb|ADX71504.1| tRNA(Ile)-lysidine synthetase [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 402

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/299 (22%), Positives = 115/299 (38%), Gaps = 22/299 (7%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF---GKIKFSAISVDHCLRET 65
           +R  +    YP  ++VA SGG DS+  L A+ +  + R       ++  A+ VDH L+E 
Sbjct: 52  LRDALAQAGYPGRLIVACSGGPDSLA-LAAVAAYFARRGHVDGHPVRVGAVVVDHQLQEG 110

Query: 66  AKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           + +     + V   L +    + +   +    G  AAAREAR+  +   A    A  ++ 
Sbjct: 111 SAEVAAETARVLQELGLAPVEIRTVTVAGEGMGPEAAAREARHEALEAAAAGQGADAVLL 170

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            HT DDQ E V +   R    + +                + RPFL  RR D        
Sbjct: 171 GHTLDDQAEQVLLGLARGSGTRSLAGM-------RPARGKLLRPFLELRRADTEEICAVE 223

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY--- 241
            +    DP+N D  F R R R  V       L   + +       +    A  + +    
Sbjct: 224 ELDPWHDPTNADPAFARSRTRMEVLPHLEEKLGPGVAESLARTAAILQLDADYLEEVAET 283

Query: 242 ----LTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
               L       +++ ++ L  +   + F ++  +AA  GGQ   P Y+ +      L+
Sbjct: 284 TFLSLAQRNGPEVSLPEEALRALAPAIRFRVIAKAAADVGGQQ--PSYQRLLAAEALLR 340


>gi|124514863|gb|EAY56374.1| TRNA(Ile)-lysidine synthetase [Leptospirillum rubarum]
          Length = 504

 Score =  145 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 21/219 (9%)

Query: 2   FLSP-IESVRFFVR-------SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF 53
           FLSP +  +  F+R       +   P H  VA+SGG+DS+     L  +L      +   
Sbjct: 14  FLSPYLSRLESFLRDNGIHPDNHPSPPHFHVAISGGADSV----FLAFLLHLFLEDRHSL 69

Query: 54  SAISVDHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
           + +  +H  R    +++  ++ +    +     +       P        R+ RYA    
Sbjct: 70  TLVHFNHRTRGKENEEDEIFLRNFARHIGRPLRIGILSEPLPDNVPEDFLRKKRYAFFDT 129

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLR 171
                   ++  AH  DDQ+ET+ M   R    KG +G+    D  ++       RP L 
Sbjct: 130 LLTENRKNILFLAHHQDDQVETILMNLFRGTGPKGVLGMLNKPDRRIF-------RPLLE 182

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
              ++IR+ L    I +  D SN    + R RVR  +  
Sbjct: 183 TGADEIRNVLSDHRIPYRIDSSNLQHDYLRNRVRMELVP 221


>gi|227494492|ref|ZP_03924808.1| tRNA(Ile)-lysidine synthetase [Actinomyces coleocanis DSM 15436]
 gi|226832226|gb|EEH64609.1| tRNA(Ile)-lysidine synthetase [Actinomyces coleocanis DSM 15436]
          Length = 366

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 116/298 (38%), Gaps = 24/298 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            H +VA SGG+DS+ L +A        +     F+A+ VDH LR  +  E   V+     
Sbjct: 37  DHWVVACSGGADSLALTVATADWCHRLNK---DFTAVIVDHQLRSESAAEAASVAADLIA 93

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMR 138
            +I   VV  +    Q G+ A AREARY  + +   T+N  T ++  HT DDQ ETV ++
Sbjct: 94  NKIPAVVVKAQVRAGQ-GIEAQAREARYQALVDFCNTLNQPTAVLVGHTQDDQAETVLLK 152

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDD 197
             R    K   L+GM         +   RPFL   RR     F     + + +DP+N  D
Sbjct: 153 LARGAGMK--ALAGMPQQWRNPQGIKFHRPFLAEIRRRQTEEFCNCLGLEYVQDPTNFLD 210

Query: 198 ---------RFERVRVRRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
                       RV +R  V       +    +    +     R   +      + ++ +
Sbjct: 211 GPWKTQAGQALPRVALRHQVLPQLKTALGQDPIPALNRVASQAREDEDFIFNFALKRWES 270

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             ++    +  D L  ++  +   +R+   I      +       + +  L +  +G 
Sbjct: 271 GELQDQWGVRVDALEKEAKAVR--MRIWKLIFAQHSHIQLTSRQLQELDRLITDWQGQ 326


>gi|302535220|ref|ZP_07287562.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. C]
 gi|302444115|gb|EFL15931.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. C]
          Length = 342

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 89/211 (42%), Gaps = 4/211 (1%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           I+   I+VDH L+  +      V    + LR
Sbjct: 40  VLVACSGGADSMALASALAFEAPKLG---IRAGGITVDHGLQVGSDLRAAEVVTRMTALR 96

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +            + G  AAAR+ARYA + E A  + A  ++  HT DDQ ETV +   R
Sbjct: 97  LDPVESVAVRVGREGGPEAAARDARYAALDEAADRLGACAVLLGHTRDDQAETVLLGLAR 156

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               + +             N    RPFL+  R+  R   + +++   +DP N D  + R
Sbjct: 157 GSGIRSLSGMAEVSGGPGRTN-RYRRPFLQVDRQTARKACMVQSLPVWDDPHNIDPAYTR 215

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            R+R         AL   + +      +++ 
Sbjct: 216 SRLRHEGLPALEKALGKGVVEALARTAQLSR 246


>gi|182414547|ref|YP_001819613.1| tRNA(Ile)-lysidine synthetase [Opitutus terrae PB90-1]
 gi|177841761|gb|ACB76013.1| tRNA(Ile)-lysidine synthetase [Opitutus terrae PB90-1]
          Length = 353

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 10/233 (4%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVCSRLRI 82
           VA SGG+DS+     L  + +     + + SA   +H LR  A   + R+ + VC+ L +
Sbjct: 44  VAFSGGADSL---ALLLLLWAHWPEHRRRLSAAHFNHRLRGRAALQDERFCARVCAALHV 100

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
             +V  W++ +P     A AR AR+A      +   A ++   H  DD  ET+ MR  R 
Sbjct: 101 PLAVDHWED-RPAKPSEAEARTARHAFFDRQLRKRRARVLWFGHQQDDIAETLLMRLARG 159

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GL+               RP L  ++ ++ + L +   SWCED +N  + + R 
Sbjct: 160 SGL--AGLAAPRPVQAMPAGKVHLRPLLGLKKAELAAALRRCGASWCEDQTNAGEHYLRS 217

Query: 203 RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           R+R+ V      A+  +          ++  +       L   +  +  + +D
Sbjct: 218 RIRQRVLPAWRAAVGERDALAG---AALSRELMEEDDTALQAWLARLAPLRED 267


>gi|317488918|ref|ZP_07947448.1| hypothetical protein HMPREF1023_01147 [Eggerthella sp. 1_3_56FAA]
 gi|316911992|gb|EFV33571.1| hypothetical protein HMPREF1023_01147 [Eggerthella sp. 1_3_56FAA]
          Length = 371

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 112/318 (35%), Gaps = 44/318 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           L+ VSGGSDS  L      +    + G++    + V+H LR E A ++ R+V+ +   L 
Sbjct: 30  LLMVSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLD 87

Query: 82  IAHS----VVSWKNSKPQTGLMAAAREARYALIS--------EHAKTINATLIMTAHTFD 129
           +        ++ +  +    + A AR  RY   +          A  +    I+TAHT D
Sbjct: 88  VPLFSCDIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTAD 147

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF--------- 180
           D++E+ YMRS       G          +   N  + RP L   RE++R++         
Sbjct: 148 DRVESFYMRSIVGTGPGGF-------RAMKYRNGPVVRPLLDASREELRAYIAERERDGA 200

Query: 181 ---LLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKV 230
                     W ED +N      R  VR  +           L  L   M    D    +
Sbjct: 201 PVACDDAGCLWREDATNAHTDRFRAYVRHEIVPRAKERNPQLLEVLGRTMNLIADEDDML 260

Query: 231 NNAVAMLIPKYLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            + V  L+  ++        A   ++         L    +  +  +  G+ +     S+
Sbjct: 261 EDMVDGLMAGHVEALGDEYDAGCVLAPAFGAEPLPLRRRAVMRALQLMLGRDARVETASV 320

Query: 288 ERVMLFLKSGKRGCVSIG 305
           E V+        G    G
Sbjct: 321 EAVLAAFDDEAGGKPRSG 338


>gi|291563476|emb|CBL42292.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [butyrate-producing bacterium SS3/4]
          Length = 261

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/215 (21%), Positives = 84/215 (39%), Gaps = 18/215 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVC 77
            HI V VSGG DS+ LL ALH +            A +VD    +++ +      +   C
Sbjct: 24  DHIAVGVSGGKDSLALLYALHELQRFYP-KHFTLHAFTVDLGFGIQDFSG-----IKAFC 77

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              ++  +++  +  K       ++   A   + R   ++  AK      I  AH  DD 
Sbjct: 78  DGFQVPLTIIPTEIGKIVFETRKESNPCALCAKMRKGALNLEAKAAGCNKIAYAHHKDDI 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ +        +G   +    T L    L + RP +     D+  F  + N+  C++
Sbjct: 138 IETMLLSLM----FEGRFYTFPPKTFLDRTELTVIRPLMYVSEADVIGFKNKYNLPVCKN 193

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           P   D   +R  V+     ++     +K + F  +
Sbjct: 194 PCPADGHTKREYVKNLTSQLNKENPGIKERLFHAV 228


>gi|320010033|gb|ADW04883.1| tRNA(Ile)-lysidine synthetase [Streptomyces flavogriseus ATCC
           33331]
          Length = 357

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 124/305 (40%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL     +     ++   I+VDH L+  +      V    + +R
Sbjct: 58  VLVACSGGADSMALASALAF---ESRKLPVRAGGITVDHNLQPGSGLRAGEVVARLAEMR 114

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +              G  AAAR+ARYA +   A+   A  ++  HT DDQ ETV +   R
Sbjct: 115 LDPVEAVAVRVGRDGGPEAAARDARYAALDAAAERHGAFAVLLGHTRDDQAETVLLGLAR 174

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFL+  R+  R   L ++I   +DP N D  + R
Sbjct: 175 GSGIR--SLSGMAAASGPAGRYR--RPFLQLDRQTARKACLVQSIPVWDDPHNIDPAYTR 230

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII----AISQDIL 257
            R+R         AL   + +      +++   A  +  +     RS++     +    L
Sbjct: 231 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAARSVLDDAGRLECVKL 290

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314
           ++    +   +   A I  G  +   +      +  L +G RG  +I   GRV + R+  
Sbjct: 291 SVLPPAVRRRVLRRAVIDAGSPAGSLFARHIEEVDRLITGWRGQGAINLPGRVEVRRQGG 350

Query: 315 FLWIT 319
            L I 
Sbjct: 351 RLVIR 355


>gi|167586804|ref|ZP_02379192.1| tRNA(Ile)-lysidine synthetase [Burkholderia ubonensis Bu]
          Length = 370

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 118/325 (36%), Gaps = 26/325 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +      A I +A SGG DS  LL A   V      G  +  A+ V H L   
Sbjct: 14  LDAVGVALADAPSGARIAIAYSGGLDSSVLLDAAVRVA-----GASRCIALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124
           A     + +   ++L +A   +     +    G+ A+ARE+RYA +    +   A ++  
Sbjct: 69  ADAWAAHAAASAAKLGVAFDSMRVDVPRNSGAGIEASARESRYAALDAMCERHGAAVLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R         +           +   RP LR  R  +  +  QR
Sbjct: 129 AQHADDQAETVLLQLLRGAGIA-GIAAMAPRYRPAAARVERVRPLLRLLRAQLERYAAQR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA---MLIPKY 241
            ++W +D SN D RF R  +R  V    L AL +    F+D   +     A    L+   
Sbjct: 188 ELAWIDDESNQDTRFARNALRVDV----LPALAVHFPGFRDALGRAAQHAASAQRLLDDL 243

Query: 242 LTVHMRSIIAISQDILN------IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
             +            L+      +D      LLR      G  +       +  +M  L+
Sbjct: 244 AELDFAGAARDDGRALSRSALVALDDARGANLLRFWMRRLG--LPGASAARLADMMRQLR 301

Query: 296 SGKRGCVSIGRVVIDRRANFLWITR 320
                      + +D     L + R
Sbjct: 302 DAHDA----HALRVDHAGQCLRLYR 322


>gi|284989211|ref|YP_003407765.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160]
 gi|284062456|gb|ADB73394.1| tRNA(Ile)-lysidine synthetase [Geodermatophilus obscurus DSM 43160]
          Length = 341

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 106/273 (38%), Gaps = 13/273 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +R+   P  +L A SGG+DS+       ++  +     ++   I+VDH L+  + 
Sbjct: 14  AVRPGLRASDRP--VLAACSGGADSV---ALAAALAFEARHAGVRAGGITVDHGLQPGSA 68

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +     + +   L +   +V         G   AAR ARY      A       +   HT
Sbjct: 69  ERAERTAQLLRGLGLDPVLVRRVAVAAGGGPEGAARTARYEA-LAAAAAQLGARVALGHT 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +   R    +   ++GM      D   W  RP L  RR   R     + + 
Sbjct: 128 LDDQAETVLLGLGRGSGPR--SVAGMVPERTADGTTW-WRPLLGVRRATTREACADQGLP 184

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLT 243
             +DP N D  + R R+R  V  +    L       + +  DL  +  +A+  L    L 
Sbjct: 185 VWDDPWNADPAYTRARLRGEVLPLLEDVLGGGVAPALARTADLLREDLDALDELAAAELA 244

Query: 244 VHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
               +    ++++  + + L   +LR      G
Sbjct: 245 RLAGADELAARELGALPAALRRRVLRGWLRAAG 277


>gi|323486908|ref|ZP_08092224.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum
           WAL-14163]
 gi|323691956|ref|ZP_08106205.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323399771|gb|EGA92153.1| hypothetical protein HMPREF9474_03975 [Clostridium symbiosum
           WAL-14163]
 gi|323503965|gb|EGB19778.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 246

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 14/215 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I V +SGG DS+ LL ALH +       + + SAI+VD         ++  V  +C
Sbjct: 22  SGDKIAVGISGGKDSLTLLYALHGLKRFYP-NEFELSAITVDLGF---ENFDLSPVRSLC 77

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           S L +  +VV     K       ++   A   + R   ++E AK +    I  AH  DD 
Sbjct: 78  SELSVPFTVVPTDIGKILFETRKESNPCALCAKMRKGALNETAKQMGCNKIAYAHHRDDL 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ +        +G   +    T L    L + RP +     D+  F  + ++  C++
Sbjct: 138 IETMLLSLI----YEGRFYAFSPKTFLDRTELTVIRPMIYVSEADVIGFKNRFSLPVCKN 193

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           P   D + +R  V++  + ++L A  +K + F  +
Sbjct: 194 PCPVDGKTKREYVKQLTKQLNLQAPGVKERLFHAI 228


>gi|225022109|ref|ZP_03711301.1| hypothetical protein CORMATOL_02142 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945042|gb|EEG26251.1| hypothetical protein CORMATOL_02142 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 301

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 88/204 (43%), Gaps = 22/204 (10%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            +R  VR+L     +L+ +SGG+DS+GL+ A  +   D         A+ VDH L+  + 
Sbjct: 18  KLRRAVRALASEDPVLIGLSGGADSLGLVAAALAEGRD-------VLALCVDHGLQPDSA 70

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                   +   L      V  +       + A AREARY  +   A   +   +  AHT
Sbjct: 71  TVADRAVAMARSLGAEARSVKVQVKP--GNIEAQAREARYKALMTAAAAES-RSVWVAHT 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET  + S R  A  GM +SG            + RPFL  RR D  +   +  + 
Sbjct: 128 MDDQAETYLLGSLRGRAV-GMPVSG-----------TVIRPFLSVRRADTVAACAELGLE 175

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211
              DP N D RF RVRVR  V  +
Sbjct: 176 VWHDPMNADPRFRRVRVRTEVLPL 199


>gi|108563137|ref|YP_627453.1| hypothetical protein HPAG1_0712 [Helicobacter pylori HPAG1]
 gi|107836910|gb|ABF84779.1| hypothetical protein HPAG1_0712 [Helicobacter pylori HPAG1]
          Length = 338

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 80/211 (37%), Gaps = 20/211 (9%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R F   L  +     L+  SGG DS  L   L           I F    VD+  ++ 
Sbjct: 2   TARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------KNIAFDIALVDYNTQKQ 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + +++   +         +      K +      AR+ RY       +  +   ++ A
Sbjct: 55  RLEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLMREYSYKHLILA 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQ 183
           H  +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++    
Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAKD 167

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           +   + ED SN+  +F+R   R+   +  + 
Sbjct: 168 QK--FFEDDSNSSLKFKRNFFRKHYANALMQ 196


>gi|257792629|ref|YP_003183235.1| tRNA(Ile)-lysidine synthetase [Eggerthella lenta DSM 2243]
 gi|257476526|gb|ACV56846.1| tRNA(Ile)-lysidine synthetase [Eggerthella lenta DSM 2243]
          Length = 371

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/315 (20%), Positives = 110/315 (34%), Gaps = 44/315 (13%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLRIAH 84
           VSGGSDS  L      +    + G++    + V+H LR E A ++ R+V+ +   L +  
Sbjct: 33  VSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLDVPL 90

Query: 85  S----VVSWKNSKPQTGLMAAAREARYALIS--------EHAKTINATLIMTAHTFDDQL 132
                 ++ +  +    + A AR  RY   +          A  +    I+TAHT DD++
Sbjct: 91  FSCEIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTADDRV 150

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF------------ 180
           E+ YMRS       G          +   N  + RP L   RE++R++            
Sbjct: 151 ESFYMRSIVGTGPGGF-------RAMKYRNGPVVRPLLDASREELRAYIAERERDGAPVA 203

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKVNNA 233
                  W ED +N      R  VR  +           L  L   M    D    + + 
Sbjct: 204 CDDAGCLWREDATNAHTDRFRAYVRHEIVPRAKERNPQLLEVLGRTMNLIADEDDMLEDM 263

Query: 234 VAMLIPKYLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           V  L+  ++        A   ++         L    +  +  +  G+ +     S+E V
Sbjct: 264 VDGLMAGHVEALGDEYDAGCVLAPAFGAEPLPLRRRAVMRALQLMLGRDARVETASVEAV 323

Query: 291 MLFLKSGKRGCVSIG 305
           +        G    G
Sbjct: 324 LAAFDDEAGGKPRSG 338


>gi|50955662|ref|YP_062950.1| hypothetical protein Lxx21520 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|61216490|sp|Q6ACP8|TILS_LEIXX RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50952144|gb|AAT89845.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 332

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 110/314 (35%), Gaps = 18/314 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
             L   A +L+ +SGG+     L    +   +      +  AI VDH L+  + +     
Sbjct: 26  HPLAPGALVLIGLSGGA---DSLALAAAAAFEAPRAGFRSGAIVVDHGLQPGSAEVAAGA 82

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +     L +   +V     +   G   AAR AR+      A+   A  I+ AHT DDQ E
Sbjct: 83  ACQARALGLGPVLVERVRVEAAGGPEGAARAARHTAFDSAARATAAARILLAHTLDDQAE 142

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           TV +   R      +                + RPFL  RR   R+F     +   +DP 
Sbjct: 143 TVLLGLARGSGPSSLQGM-------LPDTGRLLRPFLGLRRATTRAFCADSGLEPWDDPH 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYL--------KMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           N D  + RVRVR  V  +    L            ++ ++    +++       + ++  
Sbjct: 196 NDDPAYTRVRVRSAVLPVLEQELGPGVAEALARTAEQLREDDQALDSLALEGAQELVSQA 255

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIG 305
               +A+    L      L   +          +SL    ++    L      +G +S+ 
Sbjct: 256 DDGSVALEVRGLAAGPPALRQRIIRLVVSAEFGVSLSRSHTLAVAALIADWHGQGPLSLP 315

Query: 306 RVVIDRRANFLWIT 319
            V + R+   L   
Sbjct: 316 GVRVVRQNGLLTFH 329


>gi|311107714|ref|YP_003980567.1| tRNA(Ile)-lysidine synthetase [Achromobacter xylosoxidans A8]
 gi|310762403|gb|ADP17852.1| tRNA(Ile)-lysidine synthetase [Achromobacter xylosoxidans A8]
          Length = 354

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 126/335 (37%), Gaps = 28/335 (8%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             I ++R  + +L   P  I VA+SGG+DS  L +   +++ +      +     V H L
Sbjct: 26  ELITALRRALLALPERPPRIAVALSGGADSAMLAVHAAALVRELGM---ELMLFHVHHGL 82

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATL 121
           ++ A    ++V  +   L +  SV   + ++    G+ AAAR+ARYA +++ A+    T 
Sbjct: 83  QDAADAWTQHVRTLADLLALPLSVARVEVAQAAGKGIEAAARDARYAALAQLAREQGVTH 142

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I+ AH  +DQ ETV +R  R     GM        +     L   RP+L   R+ I    
Sbjct: 143 ILLAHHRNDQAETVLLRLLRGTGLAGMAAM---APVSRRDGLLYLRPWLEVDRDAILHAA 199

Query: 182 LQR----NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
                       +DP+N D  + R  +R  +  + L A +   +       +     A +
Sbjct: 200 DAVAAATGWRPVQDPTNADPHYTRAALRELLAPV-LDARWPGWRGIVARHARHMGEAAEI 258

Query: 238 IPKYLTVHMR-------SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
           + +                    Q    +      ++LR      G    +P    M  +
Sbjct: 259 LDEVAREDFATLDPSGDGASFSLQAWRGLSEARQAHVLRHWLERNG--ARMPTDARMRDL 316

Query: 291 MLFLK------SGKRGCVSIGRVVIDRRANFLWIT 319
           +  L+        ++  V     VI      +W+ 
Sbjct: 317 LRQLRGLHSLGHDRQLRVEQAGHVIRCHRGRVWVE 351


>gi|197106556|ref|YP_002131933.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           [Phenylobacterium zucineum HLK1]
 gi|196479976|gb|ACG79504.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           [Phenylobacterium zucineum HLK1]
          Length = 411

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/411 (20%), Positives = 144/411 (35%), Gaps = 31/411 (7%)

Query: 14  RSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           R L+  +   + VAVSGG DS+ L +             +  +     H L   +     
Sbjct: 14  RHLLKGSRRPLAVAVSGGGDSVALALIAEGWARRSRRDLLLLTLD---HGLNPDSAAWTG 70

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               +  RL      ++W   KP +GL AAAR AR+ L++E A+   A +I+  HT DD 
Sbjct: 71  RCEALAQRLGRPFRALAWTGPKPASGLPAAARAARHRLLAEAAREAGARVILMGHTADDV 130

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E   MR+      +   +            +++ RP L  RR ++R +L  R  +W ED
Sbjct: 131 AEAQVMRAAGATTPEPR-VWAPSPAWPEGRGVFVLRPLLDVRRAELRDWLSARGETWIED 189

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           P+N D RF                    +     L  +     A+   + L V   +  A
Sbjct: 190 PANADPRF------------ARARARRALPADTPLERQEPAPAAIPFEERLGVLDVARAA 237

Query: 252 ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
                    + L    L ++    GG    P      R+   L+       ++    I+ 
Sbjct: 238 FRAS----PAGLAERWLAMACVCAGGGSRRPPGVRAARLSAALRGDGPVLATLAGGRIEA 293

Query: 312 RANFLWITRAV-----RNLPTLILYPEETTVWDGRYQFQNLSD--SLIQIGPQSYRKADV 364
               + I R         L  L L   +  VWDGR++         + ++   + R  D 
Sbjct: 294 DTTAIRIFREAGEAARGGLAALSLPRSQAVVWDGRFELLAPRPGLEVRRLAGLASRLPDA 353

Query: 365 PSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFDLP--VAYAFSISFG 413
                  +   A  ++P+   G+ +  P         +   VA     + G
Sbjct: 354 ERRRLQAVPAAARGALPTILDGERVSCPLLSDTPAVQVRGLVADRLRAAAG 404


>gi|145254700|ref|XP_001398711.1| PP-loop family protein [Aspergillus niger CBS 513.88]
 gi|134084294|emb|CAK43181.1| unnamed protein product [Aspergillus niger]
          Length = 645

 Score =  143 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 84/266 (31%), Gaps = 65/266 (24%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSV---LSDRSFGKIKFSAISVDHCLRETA 66
           R  V  L  P  + +A+SGG+DSM L           +  S  K   +A  VDH  RE +
Sbjct: 38  RHHVSHL--PRRLGLAISGGADSMALAYLCKQWERTQTQTSDEKTSVTAFVVDHKAREES 95

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLIMTA 125
             E   V+     + +   ++               AR  R+  + +  +  +   ++  
Sbjct: 96  TREANMVAGWLDDMGLQTQILPLTWPSHHISAFETHARRLRFQALGQACRAHSIETLLMG 155

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMC------------DTILYDLNLWISRP----- 168
           H  DD +ET   R       +G GL+G+                    ++ + +P     
Sbjct: 156 HHQDDNVETTLWRLC--TGARGAGLAGIPAVTRIPECHGLFGVAESGSSITLLKPGNSDY 213

Query: 169 ---------------------------------------FLRCRREDIRSFLLQRNISWC 189
                                                   L   ++++ +     NI + 
Sbjct: 214 RIKTTNTNELKLTGSSSNTTQHQQTKYKIATGGISIARPLLAFPKQNLLATCKANNIPYV 273

Query: 190 EDPSNTDDRFE-RVRVRRFVRDIDLH 214
           EDP+N D     R  +R  + +  L 
Sbjct: 274 EDPTNFDPTLTPRNAIRSLLAERKLP 299


>gi|325832756|ref|ZP_08165519.1| tRNA(Ile)-lysidine synthetase [Eggerthella sp. HGA1]
 gi|325485895|gb|EGC88356.1| tRNA(Ile)-lysidine synthetase [Eggerthella sp. HGA1]
          Length = 372

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 111/318 (34%), Gaps = 44/318 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           L+ VSGGSDS  L      +    + G++    + V+H LR E A ++ R+V+ +   L 
Sbjct: 31  LLMVSGGSDSTALAYIACELRERGALGQLAM--LHVNHRLRGEDADEDARFVAQLAELLD 88

Query: 82  IAHS----VVSWKNSKPQTGLMAAAREARYALIS--------EHAKTINATLIMTAHTFD 129
           +        ++ +  +    + A AR  RY   +          A  +    I+TAHT D
Sbjct: 89  VPLFSCDIDIAGEAQRTGENVEAVARRERYLAANEALESLCLHAATPLADGRILTAHTAD 148

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF--------- 180
           D++E+ YMRS       G          +   N  + RP L   RE++R++         
Sbjct: 149 DRVESFYMRSIVGTGPGGF-------RAMKYRNGPVVRPLLDASREELRAYIAERERDGA 201

Query: 181 ---LLQRNISWCEDPSNTDDRFERVRVRRFV-------RDIDLHALYLKMKKFQDLRVKV 230
                     W ED +N      R  VR  +           L  L   M    D    +
Sbjct: 202 PVACDDAGCLWREDATNAHTDRFRAYVRHEIVPRAKERNPQLLEVLGRTMNLIADEDDML 261

Query: 231 NNAVAMLIPKYLTVHMRSIIA---ISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
              V  L+  ++        A   ++         L    +  +  +  G+ +     S+
Sbjct: 262 ERMVDGLMAGHVEALGDEYDAGCVLALAFGAEPLPLRRRAVMRALQLMLGRDARVETASV 321

Query: 288 ERVMLFLKSGKRGCVSIG 305
           E V+        G    G
Sbjct: 322 EAVLAAFDDEAGGKPRSG 339


>gi|257068456|ref|YP_003154711.1| tRNA(Ile)-lysidine synthetase [Brachybacterium faecium DSM 4810]
 gi|256559274|gb|ACU85121.1| tRNA(Ile)-lysidine synthetase [Brachybacterium faecium DSM 4810]
          Length = 364

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 27/236 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +LV +SGG+DS+ LL     V +      ++  A  VDH L++ +            RL
Sbjct: 38  RLLVGLSGGADSLALLATAVWVGTRMG---LETEAAIVDHGLQDGSAQVAERALVQAERL 94

Query: 81  RIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
             A  V+  +       GL  +AR AR+  +    +   A  ++ AHT DDQ E V M  
Sbjct: 95  GAAAHVLPVEVDLAAPGGLENSARAARHDALETLRRERGALALLMAHTLDDQAEQVLMGL 154

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--------CRREDIRSFLLQRNISWCED 191
            R    +   LSG+  T        + RPFL          RR D        ++ W ED
Sbjct: 155 ARGGGPR--ALSGIPRTR-----GALLRPFLGTGRDERTALRRADTEEICRLHDLEWWED 207

Query: 192 PSNTDDRFERVRVRR----FVRDIDLHALYLKMKKFQDL----RVKVNNAVAMLIP 239
           P N D+   R RVR      +R+I    L   + +  DL       ++   A L+ 
Sbjct: 208 PMNADETLLRSRVRHRALPLLREILGEHLDENLARTADLVGPDAEHLDAEAAALLE 263


>gi|51210035|ref|YP_063699.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
           var. liui]
 gi|61216496|sp|Q6B8L1|TILS_GRATL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50657789|gb|AAT79774.1| conserved hypothetical plastid protein [Gracilaria tenuistipitata
           var. liui]
          Length = 320

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/278 (22%), Positives = 111/278 (39%), Gaps = 22/278 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FLS I       ++L+ P  IL+A+SGG DS+ L+  +    +  +    +   I +DH 
Sbjct: 10  FLSIIPKY----KNLIKPLSILIALSGGKDSLCLVKLIEDFNNTYNHFS-RIEYIYIDHQ 64

Query: 62  LRETAKDEVRYVSDVCSRLRIAHS---VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            R  +K  ++++ +      I+ +      ++ +K +    A  R  RY  I  HA   +
Sbjct: 65  WRSDSKQNIKHLLNY-----ISITNNNTYIYQINKMEIS-EANMRNIRYQAIVRHAIQNS 118

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
             +I+T H   DQ+ET  +   R    +G+        I     + + RP +     D+ 
Sbjct: 119 HDIIVTGHNQTDQVETFLLNLMRGTGLEGLSSLPYIRKIT--DQIQVIRPLIHINTGDVL 176

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAV 234
            F  + N+    D +N      R R+R  +        + K++     F  L    N  +
Sbjct: 177 WFCRKFNLPIWSDKTNFYYTNFRNRIRYELLPYLKEYFHPKIESNIINFLSLSSIENEYI 236

Query: 235 AM-LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRV 270
               I  YL       IAI+  I+ N    L   +L +
Sbjct: 237 KQNSIKLYLASRHSHYIAINYKIIKNQHLALQKRVLNI 274


>gi|331091115|ref|ZP_08339957.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405337|gb|EGG84873.1| hypothetical protein HMPREF9477_00600 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 244

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 91/217 (41%), Gaps = 14/217 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +    HI V +SGG DS+ LL ALH +       K + SAI+VD      +  ++  V +
Sbjct: 20  IQEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KKFELSAITVDLG---YSDFDLTPVEN 75

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +C  L + + +V           + ++   +   + R   ++E  K +    +  AH  D
Sbjct: 76  LCRELDVPYKIVKTDIGRILFEERKESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKD 135

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ +        +G   S    T L  ++L + RP +     D+  F  + N+   
Sbjct: 136 DIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPMMFVDEADVIGFKNKYNLPVV 191

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           ++  + D   +R   +  V+ ++      K + F  +
Sbjct: 192 KNKCSVDGHTKRQYAKELVKQLNTEHNGAKERMFTAI 228


>gi|227502055|ref|ZP_03932104.1| tRNA(Ile)-lysidine synthetase [Corynebacterium accolens ATCC 49725]
 gi|227077210|gb|EEI15173.1| tRNA(Ile)-lysidine synthetase [Corynebacterium accolens ATCC 49725]
          Length = 297

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 102/263 (38%), Gaps = 29/263 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V +SGG+DS+ L  A+ +   D         A+ VDH L++ ++++    +     L 
Sbjct: 5   VGVGLSGGADSLALCAAMIAEGHD-------VIALCVDHGLQDGSREQAEKAAWQAESLG 57

Query: 82  IAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATL-------IMTAHTFDDQLE 133
               V+  +  +     L A AR+ARY  +S  A+   A+        I  AHT DDQ E
Sbjct: 58  ARARVLVVRVPEEAGNSLEAVARQARYQAMSAAAREDGASRRGGGPLEIAVAHTADDQAE 117

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ + + R        ++GM +  + +    + RPFL+ RR D      +  +   +DP 
Sbjct: 118 TLLLGALRGR------VAGMPERAVVE-GARVVRPFLQVRRADTEGACAELGLDVWQDPQ 170

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N D  F RV +RR +       +        D    +  A          +   +  A  
Sbjct: 171 NADTDFRRVALRREIIPELSRVIG------GDAVPALAQAAMDTARDEEYLATAAT-ADC 223

Query: 254 QDILNIDSTLLFYLLRVSAAICG 276
            ++  +        +       G
Sbjct: 224 AELAALPEPRRRRAIAAWLIERG 246


>gi|317180489|dbj|BAJ58275.1| hypothetical protein HPF32_0693 [Helicobacter pylori F32]
          Length = 343

 Score =  143 bits (361), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           VR F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 8   VRDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ENIAFDTALVDYNTQKQR 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 61  LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++ +  R
Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIIRPLLYTPKDTLKTLVKDR 173

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
              + ED SN+  +F+R   R+   +  +  
Sbjct: 174 --EFFEDDSNSSLKFKRNFFRKNYANSLMQH 202


>gi|303286641|ref|XP_003062610.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456127|gb|EEH53429.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 758

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 9/194 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +++SGG DSM L + L  +  D S+G     A+ +D+  R  +  E  +V   C R+ 
Sbjct: 279 VGISLSGGVDSMALAVILKRLSRDASYGGFDVVAMHIDYDNRPESGVEADFVRGWCDRMG 338

Query: 82  IAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   V       +   P+    A +R  RY    + AKT     +   H   D  E +  
Sbjct: 339 IECVVRKIAEVTRGVTPREQYEAESRAIRYGFYKDVAKTHAFPAVFVGHHEGDVQENIIA 398

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
              R      + ++GM +T + +  + I RP L   +  +  F  +  + +  D + T  
Sbjct: 399 NLMRGANL--LAVNGMEETGVVE-GVAIWRPMLPHSKAVVLDFAHKYGVPYFLDSTPTWS 455

Query: 198 RFERVRVRRFVRDI 211
              R ++R  +  +
Sbjct: 456 --TRGKLRNQLVPL 467


>gi|239929771|ref|ZP_04686724.1| cell cycle protein [Streptomyces ghanaensis ATCC 14672]
 gi|291438097|ref|ZP_06577487.1| tRNA(Ile)-lysidine synthase [Streptomyces ghanaensis ATCC 14672]
 gi|291340992|gb|EFE67948.1| tRNA(Ile)-lysidine synthase [Streptomyces ghanaensis ATCC 14672]
          Length = 341

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 116/305 (38%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L A SGG+DSM L  AL           ++   ++VDH L+  +      V      L 
Sbjct: 42  VLAACSGGADSMALASALAFEAPRLG---LRAGGVTVDHGLQAGSDQRAADVVLRLRELG 98

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +        +     G  AAAR+ARYA +   A+   A  ++  HT DDQ ETV +   R
Sbjct: 99  LDPVESVAVSVGRDGGPEAAARDARYAALDAAAERHGAAAVLLGHTRDDQAETVLLGLAR 158

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFL+  R+  R   + +++S  +DP N D  + R
Sbjct: 159 GSGIR--SLSGMAAVS--GAGGRYRRPFLQLDRQTARKACMVQSLSVWDDPHNADPAYTR 214

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA-----ISQDI 256
            R+R         AL   +        +++   A  +  +       +           +
Sbjct: 215 SRLRHEGLPALEKALGKGVVGALARTAQLSRDDADALDAWAGRAAAGVRDADGNLECAGL 274

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKRGCVSIGRVVIDRRAN 314
             +   +   +LR++A   G        R +E V   +    G+      GRVV  R+  
Sbjct: 275 RALPPAVRRRVLRLAAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGRVVARRQGG 334

Query: 315 FLWIT 319
            L I 
Sbjct: 335 RLVIR 339


>gi|3929907|emb|CAA10333.1| hypothetical protein [Wolinella succinogenes]
          Length = 210

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 74/205 (36%), Gaps = 12/205 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
              L+  SGG DS  L   L          +I F    V++  R  AK+E  Y  ++  R
Sbjct: 16  GKNLLGFSGGVDSTALFFLLLE-------REIPFDIALVNYHQRAQAKEEESYAKELAHR 68

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            +     +S       +     AR  RY              ++ AH   D+LE + MR 
Sbjct: 69  HQKRCFTLSCPLGP--SNFEHQARLERYRFFESLIHQEGYARLLLAHHLGDRLEWLLMRL 126

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            +  +     L G     +  L   + RP     +E +  +L Q  I + ED SN D + 
Sbjct: 127 AQGSSL--STLLGFSSREIR-LGYELIRPLGEITKEALYDYLHQHQIRYFEDESNRDPKP 183

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQ 224
            R R R     +        ++ F+
Sbjct: 184 LRNRFRPLSETLLQEHAQGLLQSFR 208


>gi|308063486|gb|ADO05373.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori Sat464]
          Length = 338

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 3   ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQR 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         V      K +      AR+ RY       K  +   ++ AH
Sbjct: 56  LEIIQHAQKLAQAHHKKCYVH--YAPKIECNFEMQARKIRYDFFETLIKEHSYKHLILAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   +E +++     
Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKETLKTLAK-- 166

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +  + ED SN+  +F+R   R+   +  +  
Sbjct: 167 DWEFFEDSSNSSLKFKRNFFRKNYANSLMQH 197


>gi|308182889|ref|YP_003927016.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori PeCan4]
 gi|308065074|gb|ADO06966.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori PeCan4]
          Length = 338

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 20/212 (9%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R F   L  +     L+  SGG DS  L   L           I F    VD+  ++ 
Sbjct: 2   TARDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQ 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + +++   +         +      K        AR+ RY       K  +   ++ A
Sbjct: 55  RLEIIQHAQKLAKTHHKKCYIH--YAPKIACNFEMQARKIRYDFFETLIKEHSYKHLILA 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQ 183
           H  +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++    
Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK- 166

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
            ++ + ED SN+  +F+R   R+   +  +  
Sbjct: 167 -DLKFFEDSSNSSLKFKRNFFRKHYANALMQH 197


>gi|301106300|ref|XP_002902233.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans
           T30-4]
 gi|262098853|gb|EEY56905.1| tRNA(Ile)-lysidine synthase, putative [Phytophthora infestans
           T30-4]
          Length = 665

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 103/287 (35%), Gaps = 18/287 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           +H+ V++SGG DSM +   +H +      G     A+ +D+  R  +  E  YV   C R
Sbjct: 225 SHMAVSLSGGVDSMVVAYLMHKLKEK--HGDFTIVAVHLDYGNRPESGAECDYVRRWCER 282

Query: 80  LRIAHSVVSWKNSKPQT----GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I   V      K  T         +RE RY+  +E  +  +   +   H   D  E V
Sbjct: 283 FGIVFHVRRIDEVKRATTRRDDYEKISREIRYSTYAEVMQKYHIPGMCFGHHRGDVQENV 342

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                +  +   + L+GM  + +    + I RP L   ++ I  F  +  + + +D +  
Sbjct: 343 ISNMMKGLSL--LNLNGMQASSVV-NGVRIWRPLLDLEKDVIFEFAHRYGVPYFKDTTPK 399

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM-----RSII 250
                R ++R  +  +                   +   A L+   +   +     +S +
Sbjct: 400 WS--TRGKLRNHLVPLLRDMYGDGFLNNLSALGAESTQCAELVDSRVLAPIMKTVGQSDV 457

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGG--QISLPGYRSMERVMLFLK 295
           A+  D   +     F    V   IC      S+   + +  ++  L+
Sbjct: 458 AVWVDCGLLKDQSFFVWKEVFRQICHSIMGNSMVREKPLHELIQKLQ 504


>gi|237752872|ref|ZP_04583352.1| tRNA-lysidine synthase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375139|gb|EEO25230.1| tRNA-lysidine synthase [Helicobacter winghamensis ATCC BAA-430]
          Length = 334

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +R      +     L+A S G DS  L   L           I F    VD+ +R+ ++ 
Sbjct: 2   LRLEFLEFLRDKRNLLAFSAGVDSSALYFLLREC-------GISFDIAIVDYGIRKQSRL 54

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           EV     +C         V  +    +      AR+ RYA   E  +  N   ++ AH  
Sbjct: 55  EVDRAKTLCF-WDKRQCFVKVEEPILKD-FEHTARKVRYAFFEEIIQAQNYHNLILAHQL 112

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D  E   M+  +  +   M        I+   +  + RP L+  R++I  +L +R I +
Sbjct: 113 NDAFEWFLMQFCKGSSLLKMQGCYKRQGIV---DYRVVRPLLKTSRQEILEYLNKRKIFY 169

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLH 214
            ED SN D +F R   R+   +  L 
Sbjct: 170 FEDFSNLDSKFLRNAFRKKFSNPLLE 195


>gi|159126807|gb|EDP51923.1| PP-loop family protein [Aspergillus fumigatus A1163]
          Length = 661

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 82/278 (29%), Gaps = 72/278 (25%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P ++ +AVSGG+DSM L      +        +  +A  VDH  RE +  E R V+   S
Sbjct: 45  PRNLGLAVSGGADSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARTVATWLS 104

Query: 79  RLRIA-------------------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            +                         + W      +     AR  R+  +    +    
Sbjct: 105 DMGKPDDDLVNSPGTNSHTGLQAQILALEWPQGSSVSAFETHARRLRFQALGIACRDRRI 164

Query: 120 TLIMTAHTFDDQLETVYMRS---QRDYAEKGM----------GLSGMCDT------ILYD 160
           + ++  H  DD +ET   R     R     G+          GL G+ ++         D
Sbjct: 165 SALLMGHHQDDNVETTLWRLCTGARGAGLAGIPPIARIPECHGLYGVSESGSMVILRPRD 224

Query: 161 ---------------------------------LNLWISRPFLRCRREDIRSFLLQRNIS 187
                                              + + RP L   +  + +   Q  I 
Sbjct: 225 NSAGAPCARSGSTTTSQVQGKDEGKQPGFPMATGGILLCRPLLAFPKASLLATCHQHRIP 284

Query: 188 WCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQ 224
           +  DP+N D     R  +R  V       L   ++   
Sbjct: 285 YVSDPTNFDPTLTPRNAIRSLVSPTFPPRLPRALQAAS 322


>gi|256833319|ref|YP_003162046.1| tRNA(Ile)-lysidine synthetase [Jonesia denitrificans DSM 20603]
 gi|256686850|gb|ACV09743.1| tRNA(Ile)-lysidine synthetase [Jonesia denitrificans DSM 20603]
          Length = 339

 Score =  142 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 111/323 (34%), Gaps = 30/323 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                + VA SGG+DS+ +   L  V   R +   + SA  VDH L   +       +  
Sbjct: 23  PPGTRVAVACSGGADSLAVAATLAHVGPRRGW---QISAFIVDHDLHPDSAQVSVVAARQ 79

Query: 77  CSRLRIAHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
              L   H     V+  +     G  AAAR ARYA +          +I+  HT DDQ E
Sbjct: 80  LIDLGFPHVTITRVTVAHGPGHGGPEAAARTARYAALDRLRTQHGVDVILLGHTRDDQAE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           +V +   R    + +       + +        RPFL   R           ++   DP+
Sbjct: 140 SVLLGLARGSGARSL-------SGIRPRTGHYVRPFLSLTRAATEEICSLHEVNVWHDPT 192

Query: 194 NTDDR---FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH----- 245
           NTD       R +VR  V  +  + L   +         + +A A  + ++         
Sbjct: 193 NTDITPQGPLRSQVRGVVIPLMENVLGPGVADALARTADLLHADAEALEQWARTAQADVT 252

Query: 246 ------MRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-- 296
                     + +    L  + + +   +LR +A   G   S    R +  +   +    
Sbjct: 253 ITTTNTAEGQVHLDLTALAALPTAIRHRVLRATALAVGAPASAVSLRHIHALDHLITQWH 312

Query: 297 GKRGCVSIGRVVIDRRANFLWIT 319
           G+      G + + R++  L   
Sbjct: 313 GQGPTYLPGAISVRRQSGTLVFE 335


>gi|37519970|ref|NP_923347.1| hypothetical protein gvip035 [Gloeobacter violaceus PCC 7421]
 gi|35210962|dbj|BAC88342.1| ycf62 [Gloeobacter violaceus PCC 7421]
          Length = 278

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 105/273 (38%), Gaps = 13/273 (4%)

Query: 50  KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL 109
            +      +DH  R  ++ + + V+ +C+   +       + ++      AAAR  RY  
Sbjct: 8   GLHLHVGHLDHRWRPGSERDAQRVAVLCNVWGVPFH---LEIARTPPASEAAARAWRYCW 64

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + + A+ +    ++T HT  D+ ETV     R     G+G             + + RP 
Sbjct: 65  LEQIARGLALERVVTGHTLSDRAETVLFNLLRGSGGAGLGSLDW--ERPLGGGVRLVRPL 122

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           L   R +  ++ L  ++  C D SN +  F R R+R  +           +++       
Sbjct: 123 LGITRAETGAYCLAHHLPICIDESNANLTFRRNRIRLELMPYLREHFNPLVEQTLARTGD 182

Query: 230 VNNAVAMLIPKYLTVHMRSIIAI----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
           + +A + L+   L  H  S++         +  +   L    +R   ++  G+   P + 
Sbjct: 183 ILHAESELLESLLDEHWHSLVQEGRLHRNTLAALPLALQRRAVRRWLSVGLGRQ--PNFE 240

Query: 286 SMERVMLFLKSGKRGCVS--IGRVVIDRRANFL 316
            +  V+  L +  R   S     ++++ +  +L
Sbjct: 241 HIAAVLGCLSAPNRTRTSPLAHSLLVEVQGEWL 273


>gi|210612743|ref|ZP_03289458.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787]
 gi|210151436|gb|EEA82444.1| hypothetical protein CLONEX_01660 [Clostridium nexile DSM 1787]
          Length = 244

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 14/219 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +    HI V +SGG DS+ LL ALH +       K + SAI+VD    E    +   V
Sbjct: 18  QMIQEGDHIAVGISGGKDSLTLLYALHGLKRFYP-NKFELSAITVDLGY-EEFDLDP--V 73

Query: 74  SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            ++C  L + + VV           + ++   +   + R   +++  K +    +  AH 
Sbjct: 74  HELCQELGVPYKVVKTDIAHILFEERKESNPCSLCAKMRKGALNDAVKEMGCNKVAYAHH 133

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET+ +        +G   S    T L  ++L + RP +     D+  F  + N+ 
Sbjct: 134 KDDIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPIMFVDEADVIGFKNKYNLP 189

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             +     D   +R   +  VR ++      K + F  +
Sbjct: 190 VVKSKCPVDGYTKRQYAKELVRQLNTEHPGAKNRMFTAI 228


>gi|319957784|ref|YP_004169047.1| tRNA(ile)-lysidine synthetase [Nitratifractor salsuginis DSM 16511]
 gi|319420188|gb|ADV47298.1| tRNA(Ile)-lysidine synthetase [Nitratifractor salsuginis DSM 16511]
          Length = 344

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/309 (20%), Positives = 108/309 (34%), Gaps = 28/309 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V  L+   + L+A S G DS  L   L           I F    V++ +R  A++E   
Sbjct: 14  VTRLLINKNNLLAFSHGLDSTALYHLLKE-------SDIPFDIALVNYGVRPEAEEEEAA 66

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                   R    +        ++   A AR  RY              ++TAH  +D+L
Sbjct: 67  --ARELARRDKRRIFVAHAPGFRSNFEAEARRFRYDFFESLIDEHGYENLLTAHQLNDRL 124

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCE 190
           E + MR  R      +                  + RP L   + ++  +L  R + W E
Sbjct: 125 EWMMMRLIRGAGTVELAGMEAVAKRFTASGTPYRLIRPLLETPKYELEHYLRSRGVEWFE 184

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           D SN  D +ER R+R  +  +         + F      +    A L   Y  ++   ++
Sbjct: 185 DSSNASDTYERNRLRPLLEPLVRRHASGIARSF----DYLAEDAAYLRRGYRELYREKLL 240

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVV-I 309
            I      +  ++   +   +A        LP Y+  E +           + +GR   +
Sbjct: 241 RI------LQVSVPSLIPLATAETLKKLSYLPSYKERELLRQHSS------LVLGRRWAV 288

Query: 310 DRRANFLWI 318
           +RR + L+I
Sbjct: 289 ERRGDLLFI 297


>gi|317012538|gb|ADU83146.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori Lithuania75]
          Length = 338

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 20/212 (9%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R F   L  +     L+  SGG DS  L   L           I F    VD+  ++ 
Sbjct: 2   TARDFKTYLEPLREGQNLLGFSGGLDSTCLFHLLVG-------ENIDFDIALVDYNTQKQ 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + +++   +         +      K +      AR+ RY       K  +   ++ A
Sbjct: 55  RLEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILA 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQ 183
           H  +D+LE   M+       KG GL+ +     Y+      I RP L   ++ +++    
Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD 167

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +   + ED SN+  +F+R   R+   +  +  
Sbjct: 168 QK--FFEDDSNSSLKFKRNFFRKHYANALMQH 197


>gi|315503391|ref|YP_004082278.1| tRNA(ile)-lysidine synthetase [Micromonospora sp. L5]
 gi|315410010|gb|ADU08127.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. L5]
          Length = 316

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/317 (22%), Positives = 116/317 (36%), Gaps = 14/317 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L     +LVA SGG+     L    +          +   ++VDH L+  + 
Sbjct: 4   AVRRVLTGLPGGGPVLVACSGGA---DSLALAAATAFVAPRLGRQAGLVTVDHGLQAGSA 60

Query: 68  DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +    V+D      +    V+  +      G  AAAREARY  +   A+  +A  ++  H
Sbjct: 61  ERAEAVADWARAEGLDPVEVLPVRVDGRPGGPEAAAREARYEALIAAARRYDAAGVLLGH 120

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R    +G  LSGM +    D  + + RP L   R D R+      +
Sbjct: 121 TRDDQAETVLLALARGAGPRG--LSGMPERRDVD-GVPLLRPLLDVPRADTRAACEALGL 177

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYL-----KMKKFQDLRVKVNNAVAMLIPKY 241
               DP N D  + R RVR  V    + AL         +    L        A+     
Sbjct: 178 DPWADPHNADPAYARARVRSDVLPGLVDALGPGVVANLARTAGLLAADNAALDALADAAL 237

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKR 299
             V           +  + + +   +L   A   G   +   +R +  +   + +  G+ 
Sbjct: 238 ADVRTADRGLSVAGLAELPAAVRTRVLHAWARELGATPAALSHRHVAALDALVTAWRGQG 297

Query: 300 GCVSIGRVVIDRRANFL 316
                G   + R A  L
Sbjct: 298 PVHLPGNHQVRRHAGHL 314


>gi|315586602|gb|ADU40983.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Helicobacter pylori 35A]
          Length = 343

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 8   ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ESIAFDIALVDYNTQKQR 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 61  LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++F    
Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTFAK-- 171

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +  + ED SN+  +F+R   R+   +  +  
Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202


>gi|218677908|ref|ZP_03525805.1| tRNA(Ile)-lysidine synthetase [Rhizobium etli CIAT 894]
          Length = 244

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 58/241 (24%)

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
           A  + ++  +H   +  +  D L  D  +L Y L    A+ GGQ   PG   MER++ F 
Sbjct: 4   AEWLDRHFRLHGGLLGQVMPDGLRQDRAILDYALGRLTAVFGGQPFAPGRAQMERLLSFA 63

Query: 295 KSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQI 354
             G+ G ++ GRVV D R + L++TR  R +  L+L P E  VWDGR +  N S   ++I
Sbjct: 64  TGGEPGRMTAGRVVFDLRRDGLYLTRESRGILPLVLQPGEAGVWDGRLKAVNRSGMTVEI 123

Query: 355 G-------------------------PQSYRKADVPS-------------------GIPP 370
                                     P ++ ++  P                    G+P 
Sbjct: 124 EGPAAPSVIPVLVTGIQPPRVGAVNDPTTHDESSAPKDLGALDSCDEHRNEGGEGRGLPK 183

Query: 371 IIAQRALSSMPSKEGG--------------KPLLAPFSRFMTKFDLPVAYAFSISFGKVF 416
              +RA++S P    G               P  APF RF+T+FD   A   S  F    
Sbjct: 184 AAWKRAIASAPVLSAGGVPLSPESEPTIHLTPYFAPFDRFLTRFDFIFANRLSAVFATAP 243

Query: 417 I 417
            
Sbjct: 244 Y 244


>gi|239980354|ref|ZP_04702878.1| cell cycle protein [Streptomyces albus J1074]
 gi|291452216|ref|ZP_06591606.1| hypoxanthine phosphoribosyltransferase [Streptomyces albus J1074]
 gi|291355165|gb|EFE82067.1| hypoxanthine phosphoribosyltransferase [Streptomyces albus J1074]
          Length = 412

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/322 (22%), Positives = 129/322 (40%), Gaps = 32/322 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           I+   I+VDH L+  +      V    + L 
Sbjct: 97  VLVACSGGADSMALASALAFEAPRLG---IRAGGITVDHGLQYGSDARAADVVARLTALG 153

Query: 82  IAHSVV----------------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +                      +     + G  AAAR+ARYA + E A+ + A  ++  
Sbjct: 154 LDPVESAAVRVAAASDRTAHGAPYAGGARRVGPEAAARDARYAALDEAAERLGAAAVLLG 213

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV +   R    +   LSGM        +    RPFL+  R+  R+  L ++
Sbjct: 214 HTRDDQAETVLLGLARGSGIR--SLSGMAAVS--GDSGRYRRPFLQLDRQTARTACLAQS 269

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           +   +DP NTD  + R R+R         AL   + +      +++   A  +  +    
Sbjct: 270 LPVWDDPHNTDPAYTRSRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDAWAARE 329

Query: 246 MRSIIAISQD-----ILNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMERVMLFLKSG 297
             ++   + +     +  + + +   +LR +       GG +       ++R++   + G
Sbjct: 330 EAAVRDETGELDCARLYALPAAVRRRILRRALVAAGAPGGSLFARHVEEVDRLITGWR-G 388

Query: 298 KRGCVSIGRVVIDRRANFLWIT 319
           +R     G+V   R+   L + 
Sbjct: 389 QRAINLPGKVEARRQGGRLVLR 410


>gi|315655902|ref|ZP_07908800.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Mobiluncus curtisii ATCC 51333]
 gi|315489966|gb|EFU79593.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Mobiluncus curtisii ATCC 51333]
          Length = 415

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 134/369 (36%), Gaps = 61/369 (16%)

Query: 8   SVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  ++SL  P    + +A+SGG DS+ L  AL  V           S  +VDH  R  
Sbjct: 32  AVRRMLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPLP-WDVSCFTVDHGWRPE 90

Query: 66  AKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT---- 120
           +  E +        L   A +V+  +      G    AR  R+ L+++ A +   T    
Sbjct: 91  SAAESQAAVQCAHELGFTAATVLRGEGRGGANGPEGEARLLRWGLLAQAAISHAKTQGKA 150

Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS----------GMCDTILYD-------- 160
             +I+T HT DDQ ETV +R  R  + + +             G+     +         
Sbjct: 151 RAVILTGHTLDDQAETVLLRMARGSSLRSISAMREFESLDCQTGLPLRFAWGEEDSGADA 210

Query: 161 -LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN---------TDDRFERVRVRRFVRD 210
            ++L ++RP L  RR    +   Q  +    DPSN          D    R  +R  V  
Sbjct: 211 VVDLSLARPLLGIRRVVTHAACEQAGLVAVNDPSNRMEGPVKTAADQPLPRAAIREQVMP 270

Query: 211 IDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-------------- 255
               AL          L  +      +L      V    +I  S D              
Sbjct: 271 ALASALGQDPAPALARLAGQAAADDTILEALAGEVFWEVLIDESGDRDREDSVKLNLKAI 330

Query: 256 -------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIGRV 307
                  ++   + +L  ++R ++ + G ++       +  V+  ++    +G +++  +
Sbjct: 331 EDYKYHNLIRYSAPVLRRVVRKASLLAGARVDSLTAAHLRGVVNLIRDWHGQGPLTLPGI 390

Query: 308 VIDRRANFL 316
            + RR NFL
Sbjct: 391 TVTRRGNFL 399


>gi|326384091|ref|ZP_08205774.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395]
 gi|326197251|gb|EGD54442.1| tRNA(Ile)-lysidine synthetase [Gordonia neofelifaecis NRRL B-59395]
          Length = 317

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/328 (23%), Positives = 117/328 (35%), Gaps = 30/328 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + +VR F    +    + VA+SGG+DS+ L  A           ++   A+ VDH L+  
Sbjct: 10  VGAVRGFADRFLDDGPVCVALSGGADSLALTAAAVR-------ARLVVHAVVVDHGLQAG 62

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + +     +           V + +      G  AAAR ARY  +           ++  
Sbjct: 63  SAEVAARAAAAARESGATAEVRTVEVGSAG-GPEAAARTARYDALRAAR---GGRPVLLG 118

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV +   R    +   LSGM +           RP L  RR   R       
Sbjct: 119 HTLDDQAETVLLGLGRGSGAR--SLSGMSEWSAPWG-----RPLLGLRRAQTREACADWG 171

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKY 241
           +   +DP N D  F RVRVR  V  +    L       + +         +A+       
Sbjct: 172 LPIWDDPHNVDPGFTRVRVRSEVLPLLEDVLGGGVAEALARTAAQLQADADALDGPAADL 231

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKR 299
           L       +   + + +  + L   +LR      G     P YR +  +   +    G+ 
Sbjct: 232 LAECAYGRVLDLEPLESAPTALRTRVLRGWLQSVG--APEPSYRVVASIGALVTDWHGQG 289

Query: 300 GCVSIG----RVVIDRRANFLWITRAVR 323
                G    R+V+ RRA  L   R  R
Sbjct: 290 PIAVGGDATARLVVTRRAGRLHAQRMSR 317


>gi|297627180|ref|YP_003688943.1| tRNA(Ile)-lysidine synthetase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922945|emb|CBL57527.1| TRNA(Ile)-lysidine synthetase [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 329

 Score =  141 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 121/314 (38%), Gaps = 14/314 (4%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R+    + + VA SGG DS+   +A    +  R    +   A+ VDH L+  +++     
Sbjct: 23  RASEQGSRVRVACSGGPDSLA--LAAAVAVCARRDPALLAEALVVDHQLQPGSREVAHAA 80

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS--EHAKTINATLIMTAHTFDDQ 131
            D    L +    V+ +      G  AAAR ARY  ++  + A      L++  HT DDQ
Sbjct: 81  VDAVRGLGLPARTVAVQVPHSGEGPEAAARRARYEALAAPDAAGGRRPDLVLLGHTLDDQ 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +   R    + +          +       RP L  RR D     ++  ++   D
Sbjct: 141 AETVLLGLVRGSGIRSLAGM----PAHFGSAPQFWRPLLGVRRADTERACVEWGLAPWHD 196

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           P N DDRF R R+R  V  +    L       + +   L  +  + +  L    LT  M 
Sbjct: 197 PQNRDDRFTRSRLRHRVLPVLTAELGEGVIEALARTATLATQDADYLDALTSSALTTIMG 256

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
                   + +  + L   L+R   A  G   +      ++  ++   +  K   +  G 
Sbjct: 257 DGGLDCARLADQPAALQGRLVRRWLATVGIVGLDFERTAAVLALVTHWRGQKGVDLPGGH 316

Query: 307 VVIDRRANFLWITR 320
            V+ R A  L++ R
Sbjct: 317 RVVRR-AGVLFLDR 329


>gi|329766712|ref|ZP_08258255.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329136967|gb|EGG41260.1| PP-loop domain-containing protein [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 304

 Score =  141 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 21/257 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG DS+ LL  ++ + S  +F   +  AI++D  +     + +  V + C++L 
Sbjct: 50  VAVAVSGGKDSLALLNVINQMKSTHNF---RIKAITIDEGIPGYRNEALEIVQEFCAKLN 106

Query: 82  IAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           + H V S+K                 +T   +     R   I   A  I A +I T H  
Sbjct: 107 VEHKVFSYKELFDLTLDEALNLRGNEKTSSCSICGTLRRRAIDHAANDIGADVIATGHNL 166

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD L+T  +        K     G  D    D  L   +PF      +I  +    NI +
Sbjct: 167 DDTLQTFVINMLSGDTNK----IGWMDPDTSDNTLRKIKPFCEIYESEIVFYAFTNNIPF 222

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             +P    +   R  +R F+  ++     +K   +Q + +KV+  V     K  ++ ++ 
Sbjct: 223 QTEPCPHMNEGIRTEIREFLNSLEGKHSGIKNNLYQSI-IKVSQIVKDTNYKQKSICVKC 281

Query: 249 IIAISQDILNIDSTLLF 265
               +  I ++ + +L 
Sbjct: 282 GNECTGKICSVCNLVLR 298


>gi|297379927|gb|ADI34814.1| tRNA(Ile)-lysidine synthetase [Helicobacter pylori v225d]
          Length = 343

 Score =  141 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 8   ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQR 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 61  LEIIQHAQKLAQAHHKKCYIH--YAPKIEHNFEMQARKIRYDFFETLIKEHSYKHLILAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++ +  R
Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLVKDR 173

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
              + ED SN+  +F+R   R+   +  +  
Sbjct: 174 --EFFEDSSNSSLKFKRNFFRKNYANSLMQH 202


>gi|291528871|emb|CBK94457.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale M104/1]
          Length = 247

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 15/215 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I + VSGG DS+ LL AL  + S       +  AI+VD         +++ V  +C  
Sbjct: 24  DKIAIGVSGGKDSLTLLYALSGIRSFYPVP-FELVAIAVDLG---YEDFDLKPVKALCDE 79

Query: 80  LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           L +   VV       S + SK Q    +   + R   +++ A ++    I  AH  DD +
Sbjct: 80  LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+++        +G   S    T L    L I RP +     D++ F  + N+  C++P
Sbjct: 140 ETMFLSLL----YEGQFYSFAPVTQLDGSGLTIIRPLMYVGESDVKGFKNKYNLPVCKNP 195

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              D    R  V++ VR +++    +K + F  ++
Sbjct: 196 CPYDGHTRREYVKQLVRQLNMENPGVKKRLFSAIQ 230


>gi|308062050|gb|ADO03938.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori Cuz20]
          Length = 338

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 3   ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVE-------ENIAFDIALVDYNTQKQR 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 56  LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++  ++    R
Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTFKTLAKDR 168

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
              + ED SN+  +F+R   R+   +  +  
Sbjct: 169 --EFFEDDSNSSLKFKRNFFRKNYANSLMQH 197


>gi|317182038|dbj|BAJ59822.1| hypothetical protein HPF57_0748 [Helicobacter pylori F57]
          Length = 343

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 8   ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ENIAFDIALVDYNTQKQR 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 61  LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++     
Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK-- 171

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +  + ED SN+  +F+R   R+   +  +  
Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202


>gi|315656172|ref|ZP_07909063.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493174|gb|EFU82774.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 415

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 134/369 (36%), Gaps = 61/369 (16%)

Query: 8   SVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  ++SL  P    + +A+SGG DS+ L  AL  V           S  +VDH  R  
Sbjct: 32  AVRRMLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPLP-WDVSCFTVDHGWRPE 90

Query: 66  AKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT---- 120
           +  E +        L   A +V+  +      G    AR  R+ L+++ A +   T    
Sbjct: 91  SAAESQAAVQCAHELGFTAATVLRGEGRGGANGPEGEARLLRWGLLAQAAISHAKTQGKA 150

Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLS----------GMCDTILYD-------- 160
             +I+T HT DDQ ETV +R  R  + + +             G+     +         
Sbjct: 151 RAVILTGHTLDDQAETVLLRMARGSSLRSISAMREFESLDCQTGLPLRFAWGEEDSGADA 210

Query: 161 -LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN---------TDDRFERVRVRRFVRD 210
            ++L ++RP L  RR    +   Q  +    DPSN          D    R  +R  V  
Sbjct: 211 VVDLSLARPLLGIRRVVTHAACEQAGLVAVNDPSNRMEGPVKTAADQPLPRAAIREQVMP 270

Query: 211 IDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD-------------- 255
               AL          L  +      +L      V    +I  S D              
Sbjct: 271 ALASALGQDPAPALARLAGQAAADDTILEALAGEVFWEVLIDESGDRDREDSVKLNLKAI 330

Query: 256 -------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIGRV 307
                  ++   + +L  ++R ++ + G ++       +  V+  ++    +G +++  +
Sbjct: 331 EDYKYHNLIRYSAPVLRRVVRKASLLAGARVDSLTAAHLRGVVNLIRDWHGQGPLTLPGI 390

Query: 308 VIDRRANFL 316
            + RR NFL
Sbjct: 391 TVTRRGNFL 399


>gi|323357530|ref|YP_004223926.1| ATPase PP-loop [Microbacterium testaceum StLB037]
 gi|323273901|dbj|BAJ74046.1| predicted ATPase of the PP-loop superfamily [Microbacterium
           testaceum StLB037]
          Length = 332

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/321 (23%), Positives = 123/321 (38%), Gaps = 17/321 (5%)

Query: 6   IESVRFFVRSLVY--PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +  VR  VR+ +      ++VA+SGG DS   L    +   +     I+  A+ +DH L+
Sbjct: 11  VAEVRRAVRAALERIDGSVVVALSGGPDS---LALAAATAFEAPRAGIRAEAVVIDHGLQ 67

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           + +       ++    L +   VV+ +      G  AAAREARYA ++  A  I A  ++
Sbjct: 68  DGSDAVAAAAAEKARALGLDARVVTVQVGS-GDGPEAAAREARYAGLARAAADIRADAVL 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             HT DDQ ETV +   R        LSGM             RP L  RR    +    
Sbjct: 127 LGHTLDDQAETVLLGLARGAGA--ASLSGMAPERRDATGPTWVRPLLAVRRRVTVAACAA 184

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVA 235
             +    DP N D  + RVRVR  V  +           AL    ++ ++      + + 
Sbjct: 185 EGLDPWTDPHNADPAYTRVRVRERVLPVLEAELGPGVAEALARTAEQLREDAAAFQDMID 244

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
             I   +      I   +  +    + L   ++R       G +SL   +++E   L   
Sbjct: 245 ETIEDIVEHAEAGISLSAAALAANPAALRNRIVRYVVESEFG-VSLTRTQTLEVARLATD 303

Query: 296 SGKRGCVSIGRVVIDRRANFL 316
              +G + +   +  R    +
Sbjct: 304 WRGQGPIDLPGCLARRAGGRI 324


>gi|269218250|ref|ZP_06162104.1| tRNA(Ile)-lysidine synthase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212378|gb|EEZ78718.1| tRNA(Ile)-lysidine synthase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 351

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/269 (26%), Positives = 106/269 (39%), Gaps = 15/269 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+AVSGGSDSM L  A   V              +VDH  RE + DE   V      + +
Sbjct: 31  LLAVSGGSDSMALAQAAVFVCRREGIVASSL---TVDHGWREGSADEAASVRSALEAMGV 87

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-NATLIMTAHTFDDQLETVYMRSQR 141
             + V+   SK   GL +AAR ARYA ++E A+++     ++  HT DDQ ETV M   R
Sbjct: 88  ESAGVARVESKGGGGLESAARAARYAALAEAARSMPGRAAVVCGHTADDQAETVLMGLGR 147

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR--- 198
               + +             ++ + RPFL  RR D+R  L    + W EDP+N  D    
Sbjct: 148 GSGPRSIAGMPAVGACPGAPDVPLVRPFLGLRRADLRQALASEGVEWVEDPTNDVDSPVR 207

Query: 199 ------FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
                   R  VR         +L   + +       +       +  +       + A 
Sbjct: 208 AADGSLLRRAAVRHRCMPALEDSLGPGVVEALARTAAMIREDLSALDGFAEEIDAKLGAE 267

Query: 253 S--QDILNIDSTLLFYLLRVSAAICGGQI 279
              +++  +   L   +LR  A   G + 
Sbjct: 268 PSVRELAGLPPALRTRILRRRAIDGGARP 296


>gi|254779293|ref|YP_003057398.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Helicobacter
           pylori B38]
 gi|254001204|emb|CAX29172.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Helicobacter
           pylori B38]
          Length = 338

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 80/212 (37%), Gaps = 20/212 (9%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R F   L  +     L+  SGG DS  L   L           I F    VD+  ++ 
Sbjct: 2   TARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQ 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + +++   +         +      K        AR+ RY       K  +   ++ A
Sbjct: 55  RLEIIQHAQTLAKTHHKKCYIHH--APKIARNFEMQARQVRYDFFETLIKEHSYKHLILA 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQ 183
           H  +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++    
Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK- 166

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
            ++ + ED SN+  +F+R   R+   +  +  
Sbjct: 167 -DLKFFEDDSNSSLKFKRNFFRKHYANALMQH 197


>gi|303249015|ref|ZP_07335260.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio fructosovorans JJ]
 gi|302489601|gb|EFL49541.1| tRNA(Ile)-lysidine synthetase [Desulfovibrio fructosovorans JJ]
          Length = 330

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/321 (22%), Positives = 105/321 (32%), Gaps = 27/321 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            A  +V  SGG DS   ++ L  +            A  VDH LR  +  E       C+
Sbjct: 20  GATWIVGFSGGPDS---VVLLAVLTVLAPRLGAHLEAAHVDHGLRPESAAEAADAEAFCA 76

Query: 79  RLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I         +    +   GL  A R ARYA   E             H  DD  E 
Sbjct: 77  AWNIPFHERRADVAGLARERGIGLEDAGRLARYAFFEELRGARPNAWTALGHQRDDLAED 136

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             MR  R     G+G          D +  I RP L   R DI +F    ++    DPSN
Sbjct: 137 QIMRLIRGTGWPGLG-----GMAALDPSRRILRPLLMTPRSDIEAFADALSLPVVRDPSN 191

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTVHMRSIIA 251
            D  + R RVR  +    L  +  +  +  +   ++          +   L         
Sbjct: 192 NDPAYRRNRVRNDI----LPRIAAENPRHGEAVARLWRQARIDEDFLEASLPDFPDPTAL 247

Query: 252 ISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRV-VI 309
             + +  +   L   L R +   CG GQ       S++  +    +G+      G+   I
Sbjct: 248 PMETLAGLHPALRLRLYRRALRACGPGQALAETLFSLDAAVAKRATGRVFQFPGGKTARI 307

Query: 310 DRRANFLWI------TRAVRN 324
            RRA    +      TR  R 
Sbjct: 308 GRRALVFRLKSGGSGTRENRR 328


>gi|291524808|emb|CBK90395.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale DSM 17629]
          Length = 247

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 15/215 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I + VSGG DS+ LL AL  + S       +  AI+VD         ++  V  +C  
Sbjct: 24  DKIAIGVSGGKDSLTLLYALSGIRSFYPVP-FELVAIAVDLG---YEDFDLEPVKALCDE 79

Query: 80  LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           L +   VV       S + SK Q    +   + R   +++ A ++    I  AH  DD +
Sbjct: 80  LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+++        +G   S    T L    L I RP +     D++ F  + N+  C++P
Sbjct: 140 ETMFLSLL----YEGQFYSFAPVTQLDGSGLAIIRPLMYVGESDVKGFKNKYNLPVCKNP 195

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              D    R  V++ VR +++    +K + F  ++
Sbjct: 196 CPYDGHTRREYVKQLVRQLNMENPGVKKRLFSAIQ 230


>gi|293363922|ref|ZP_06610658.1| tRNA(Ile)-lysidine synthetase [Mycoplasma alligatoris A21JP2]
 gi|292552412|gb|EFF41186.1| tRNA(Ile)-lysidine synthetase [Mycoplasma alligatoris A21JP2]
          Length = 291

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/285 (20%), Positives = 114/285 (40%), Gaps = 23/285 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+AVSGG DSM LL        ++ + K    A  V++  R  +  + + V + C 
Sbjct: 5   DQPILIAVSGGPDSMFLL--------NKFYKKNYVIAAFVNYNQRSDSNIDQKIVEEFCF 56

Query: 79  RLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           +  I    +    S   +      AR  RY    E  K  N   ++ A   DD +E  ++
Sbjct: 57  KNNIVLEKLILNKSDYTKGNFQDWARITRYNFFKEMYKKHNCKKLLVAQHKDDFIENYFL 116

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR-CRREDIRSFLLQRNISWCEDPSNTD 196
           +  R       G+    +      ++++ RP +    ++ I    ++ N+ +  D +N +
Sbjct: 117 QKTRKKDRLFFGIDKKSELF----DMYVERPLINRYFKKQIIKQNMKNNLIFANDYTNHE 172

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII--AISQ 254
            +++R  +R     ++L    + +K+F  L++K+ N       K +    +     A  Q
Sbjct: 173 PKYKRNEIR-----LELSNKSILLKEFLFLKIKLLNLKLSFKRKKIEYLFKKWKENAFDQ 227

Query: 255 DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
           + LN D    + + +                 +E ++ F+KS  R
Sbjct: 228 NCLNKDKYNKYLVYKYLNNNFTNIN--LSSSKIESIIEFIKSDNR 270


>gi|305680519|ref|ZP_07403327.1| tRNA(Ile)-lysidine synthetase [Corynebacterium matruchotii ATCC
           14266]
 gi|305660050|gb|EFM49549.1| tRNA(Ile)-lysidine synthetase [Corynebacterium matruchotii ATCC
           14266]
          Length = 302

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 88/210 (41%), Gaps = 25/210 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL    +VR    S      +L+ +SGG+DS+GL+ A  +   D         A+ VDH 
Sbjct: 16  FLKLRRAVRALASS---EDPVLIGLSGGADSLGLVAAALAEGRD-------VLALCVDHG 65

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           L+  +         +   L      V  +       + A AREARY  +   A   +   
Sbjct: 66  LQPDSATVADRAVAMARSLGAEARSVKVQVKP--GNIEAQAREARYKALMTAAAAES-RS 122

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +  AHT DDQ ET  + S R  A  GM +SG            + RPFL  RR D  +  
Sbjct: 123 VWVAHTMDDQAETYLLGSLRGRAV-GMPVSG-----------TVIRPFLSVRRADTVAAC 170

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
            +  +    DP N D RF RVRVR  V  +
Sbjct: 171 AELGLEVWHDPMNADPRFRRVRVRTEVLPL 200


>gi|158312163|ref|YP_001504671.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EAN1pec]
 gi|158107568|gb|ABW09765.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EAN1pec]
          Length = 608

 Score =  140 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 87/402 (21%), Positives = 149/402 (37%), Gaps = 40/402 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  V  +     +LVA SGG+DS+ L  AL  V   R+   ++   ++VDH   +T++
Sbjct: 12  AVRDAVADVPPGGLVLVACSGGADSLALAAALAFVAPRRA---LRAGLLTVDHGWDDTSR 68

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                V+     L ++   V    + P      AAR++R A +    + + A  ++  HT
Sbjct: 69  PRAEEVAASGRLLGLSPVEV---LAAPSPRSEGAARDSRRAALLAAGERLGAHAVLLGHT 125

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R    +   LSGM  T     +  I RP LR RR+  R       + 
Sbjct: 126 LDDQAETVLLRLARGSGAR--SLSGMPAT-----DGAIRRPLLRLRRDQTRQACQSLGLE 178

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           + +DP+N D  F R R R  V  +    L   + +       +  A A  +         
Sbjct: 179 FWDDPTNADPAFARARTRSTVLPVLEAELGPGIAEALARTADLLRADADALEAQAESVYA 238

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG----YRSMERVMLFLKS--GKRGC 301
            +   +       +            +       P       ++  +   L+S   +R  
Sbjct: 239 ELAGSAAGTTAPRAPR--------TPLAAEAEPGPRVEFDVAALAGLTQALRSRVLRRAA 290

Query: 302 VSIGRVVIDRRANFLW----ITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           ++ G      RA+ +W    +    R    + L              +     +  +GP 
Sbjct: 291 LAAGSSASALRADHIWAVEDLVTRWRGQKPVPLPSGVLA--------RRTGGRITLVGPD 342

Query: 358 SYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399
           +  + D P+G      +  +   P + GG    AP S  +T 
Sbjct: 343 APVRPDTPAGA-GHPGRPGVVRTPGERGGPTSRAPASGTLTP 383


>gi|186476145|ref|YP_001857615.1| tRNA(Ile)-lysidine synthetase [Burkholderia phymatum STM815]
 gi|184192604|gb|ACC70569.1| tRNA(Ile)-lysidine synthetase [Burkholderia phymatum STM815]
          Length = 472

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 119/344 (34%), Gaps = 25/344 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V     +L   A + +A SGG DS  LL A     + R  G  +  A+ V H L   
Sbjct: 14  LDAVGVAFGALPGAARVAIAFSGGVDSSVLLDA-----AVRVGGAARCLALHVHHGLSPN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A   + +        R+  +      S+     + AAAR+ARY  +           +  
Sbjct: 69  ADAWLAHGEAFARERRVEFASARVDVSRASGASIEAAARDARYRALDALCAQHRVHTLWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DDQ ETV ++  R     G+      + +     +   RP LR  R  +  +   R
Sbjct: 129 AQHADDQAETVLLQLLRGAGLAGLAAMA-PEYVPPGAAITRVRPLLRLLRGQLERYARAR 187

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-------LRVKVNNAVAML 237
           ++ W +D SN D R+ R  +R  V    L AL +    F+D               +  L
Sbjct: 188 DLGWIDDESNADTRYARNALRHDV----LPALAVHFPGFRDALARTAAHAASAQRLLDEL 243

Query: 238 IPKYL-TVHMRSIIAISQD-ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
               L T       A+S+D +L +D      LLR        ++       +   +  L+
Sbjct: 244 ARIDLHTARGEEEGALSRDALLALDDERAANLLRYWMRTL--KLPAASTARLMDALRQLR 301

Query: 296 S---GKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETT 336
                    V      +      ++        P       E T
Sbjct: 302 EIGGAHTLRVDHAGQALRSYRGQIYWETGDSADPADETALFERT 345


>gi|304391052|ref|ZP_07373004.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325935|gb|EFL93181.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 415

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 138/369 (37%), Gaps = 61/369 (16%)

Query: 8   SVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  ++SL  P    + +A+SGG DS+ L  AL  V           S  +VDH  R  
Sbjct: 32  AVRRVLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPHP-WDVSCFTVDHGWRPE 90

Query: 66  AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTI------N 118
           +  E +        L  + + V+  ++     G    AR  R+ L++  A         +
Sbjct: 91  SAAESQAAVQCARELGFSSAMVLRGESGGGANGPEGEARLLRWGLLARAAVAEAKAQGKD 150

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-------------------LY 159
             +I+T HT DDQ ETV +R  R  + + +      +T+                   + 
Sbjct: 151 HAVILTGHTLDDQAETVLLRLARGSSLRSIAAMREFETLDCKTGLPLRFAWREADSGAVA 210

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR---------FERVRVRRFVRD 210
            ++L ++RP L  RRE  ++   Q  +    DPSN  +            R  +R  V  
Sbjct: 211 AVDLSLARPLLGIRRELTQAACEQAGLVAVNDPSNRMEGPVKTAAGQPLPRAAIREQVMP 270

Query: 211 IDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYL---------TVHMRSIIAI----- 252
               AL       + +        +  + ML  +                  + +     
Sbjct: 271 ALAAALGQDPAPALARLAGQAAADDTILGMLAGEVFWEVLSDEPGDWEPGDSVKLELTVI 330

Query: 253 ----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIGRV 307
                +D++   + +L  ++R ++ + G ++       +  V+  ++    +G +++  +
Sbjct: 331 EGYKYRDLIRYSAPVLRRVVRKASLLAGARVDSLTAAHLRGVVDLIRDWHGQGPLTLPGI 390

Query: 308 VIDRRANFL 316
            + RR NFL
Sbjct: 391 TVTRRGNFL 399


>gi|261839451|gb|ACX99216.1| tRNA(Ile)-lysidine synthetase [Helicobacter pylori 52]
          Length = 338

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 3   ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVE-------ENIAFDTALVDYNTQKQR 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +  +   K +      AR+ RY       K  +   ++ AH
Sbjct: 56  LEIIQHAQKLAQVHHKKCYI--YYAPKIECNFEMQARKIRYDFFETLIKEHSYKHLILAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   +E +++    R
Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKETLKTLAKDR 168

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
              + ED SN+  +F+R   R+   +  +  
Sbjct: 169 K--FFEDDSNSSLKFKRNFFRKNYANSLMQH 197


>gi|94264675|ref|ZP_01288457.1| PP-loop [delta proteobacterium MLMS-1]
 gi|93454906|gb|EAT05150.1| PP-loop [delta proteobacterium MLMS-1]
          Length = 382

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 130/370 (35%), Gaps = 52/370 (14%)

Query: 3   LSPIES-VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           + P+E  VR  V   R +     +LVAVS G DSM LL AL ++    +      +A  +
Sbjct: 1   MHPLEKKVRQAVLGERLITAGERVLVAVSAGPDSMALLYALAALRGVAAMPAFSLAAAYI 60

Query: 59  DHCLRE-TAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEH 113
           DH LR   +  E   V+     L I             ++    L  AARE RY  + E 
Sbjct: 61  DHGLRPAESGREQELVAIAARELGITWRGGRVTAREYAARHGLSLEHAARELRYRCLQEL 120

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-------------------- 153
           A  + A  +  AH  DDQ E + +R  R  A +G+                         
Sbjct: 121 AGELAANTLAVAHQADDQAEELLLRLLRGTAREGLSGMAWSRLLADAGSGSAGPGIGGGA 180

Query: 154 ----------------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                                 D  L + RP L   + +I S+L +R I   ED SN D 
Sbjct: 181 DATFSKAEAVGAEPAAPRPAGVDNGLRLIRPLLAAPKAEILSYLARRGIVHAEDSSNQDR 240

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
           RF R RVR  +           + +       +      L+ +  T   R       + +
Sbjct: 241 RFLRNRVRLELLPWLAERFNPNIGQTLRRTATILRDEEELLAQQATAAYRQARQPGDNPV 300

Query: 258 NID----STLLFYLLRVSAAICGGQISL-PGYRSMERVMLFLKSGKRGCVS--IGRVVID 310
            +D    S     L R        ++++ P  R +E+++        G ++     V + 
Sbjct: 301 ALDLAVFSAQPRALRRRLLEKALWELAVKPLTRQIEQLLQGAAKPGDGVIAHLSAGVTVR 360

Query: 311 RRANFLWITR 320
           ++   L   R
Sbjct: 361 KQGQILLFER 370


>gi|266624801|ref|ZP_06117736.1| ExsB family protein [Clostridium hathewayi DSM 13479]
 gi|288863320|gb|EFC95618.1| ExsB family protein [Clostridium hathewayi DSM 13479]
          Length = 243

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 14/214 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI V +SGG DS+ LL AL  +         + SAI+VD         ++  V ++C 
Sbjct: 23  GDHIAVGISGGKDSLTLLYALQGLKQFYP-KHFELSAITVDLGF---GDFDLSPVKELCE 78

Query: 79  RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           R  + +++VS +  K       ++   A   + R   +++ A  +    I  AH  +D +
Sbjct: 79  RFSVPYTIVSTEIGKILFETRKESNPCALCAKLRKGALNDAAIKLGCNKIAYAHHREDLI 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   +    T L    L + RP +  +  D+  F  + ++  C++P
Sbjct: 139 ETMLLSLI----YEGRFYAFSPSTYLDRTGLTVIRPMIYVKEADVIGFKNKYDLPVCKNP 194

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              D   +R  V++  + ++     +K + F  +
Sbjct: 195 CPVDGHTKREYVKKLTKTLEQENPGVKDRLFHAI 228


>gi|298345496|ref|YP_003718183.1| tRNA(Ile)-lysidine synthetase [Mobiluncus curtisii ATCC 43063]
 gi|298235557|gb|ADI66689.1| tRNA(Ile)-lysidine synthetase [Mobiluncus curtisii ATCC 43063]
          Length = 415

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 137/369 (37%), Gaps = 61/369 (16%)

Query: 8   SVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  ++SL  P    + +A+SGG DS+ L  AL  V           S  +VDH  R  
Sbjct: 32  AVRRVLQSLGSPDDTLLCLALSGGPDSLSLAAALVRVALHHPHP-WDVSCFTVDHGWRPE 90

Query: 66  AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKTI------N 118
           +  E +        L  + + V+  ++     G    AR  R+ L++  A         +
Sbjct: 91  SAAESQAAVQCARELGFSSAMVLRGESGGGANGPEGEARLLRWGLLARAAVAEAKAQGKD 150

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-------------------LY 159
             +I+T HT DDQ ETV +R  R  + + +      +T+                   + 
Sbjct: 151 HAVILTGHTLDDQAETVLLRLARGSSLRSIAAMREFETLDCKTGLPLRFAWREADSGAVA 210

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR---------FERVRVRRFVRD 210
            ++L ++RP L  RRE  ++   Q  +    DPSN  +            R  +R  V  
Sbjct: 211 AVDLSLARPLLGIRRELTQAACEQAGLVAVNDPSNRMEGPVKTAAGQPLPRAAIREQVMP 270

Query: 211 IDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYL---------TVHMRSIIAI----- 252
               AL       + +        +  + ML  +                  + +     
Sbjct: 271 ALAAALGQDPAPALARLAGQAAADDTILGMLAGEVFWEVLSDEPGDWEPGDSVKLELTVI 330

Query: 253 ----SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK-RGCVSIGRV 307
                +D++   + +L  ++R ++ + G +        +  V+  ++    +G +++  +
Sbjct: 331 EGYKYRDLIRYSAPVLRRVVRRASLLAGARADSLTAAHLRGVVDLIRDWHGQGPLTLPGI 390

Query: 308 VIDRRANFL 316
            + RR NFL
Sbjct: 391 TVTRRGNFL 399


>gi|217033783|ref|ZP_03439209.1| hypothetical protein HP9810_7g64 [Helicobacter pylori 98-10]
 gi|216943832|gb|EEC23272.1| hypothetical protein HP9810_7g64 [Helicobacter pylori 98-10]
          Length = 343

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 8   ARDFKTYLEPLRKGKNLLGFSGGLDSTCLFHLLVG-------ENITFDTALVDYNTQKRR 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RYA      K  +   ++ AH
Sbjct: 61  LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMRARKIRYAFFETLIKEHSYKHLILAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++     
Sbjct: 119 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIIRPLLYTPKDTLKALAK-- 171

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +  + ED SN+  +F+R   R+   +  +  
Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202


>gi|295670353|ref|XP_002795724.1| PP-loop family protein [Paracoccidioides brasiliensis Pb01]
 gi|226284809|gb|EEH40375.1| PP-loop family protein [Paracoccidioides brasiliensis Pb01]
          Length = 626

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 106/300 (35%), Gaps = 77/300 (25%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P+ I +AVSGGSDSM L      ++S+R    +      VDH  RE + +E   V+   
Sbjct: 42  KPSRIALAVSGGSDSMALAFLSKQLISERLIPDLNVKPFIVDHKAREGSTEEAHKVASWL 101

Query: 78  SRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             L    S+++ + +        +    +AR+ RY ++    K  N   +   H  DD +
Sbjct: 102 KDLGFEPSILTLRWASGTIPSSLSNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTV 161

Query: 133 ETV---YMRSQR-----------DYAEKGMGLSGMCDTILY------------------- 159
           ETV    +R QR            +  +  G+ G+ ++  +                   
Sbjct: 162 ETVLSRLVRGQRQASGFTGVASVGHIPECHGIYGLAESGSFIKLKNVKSRIDPARRRHSV 221

Query: 160 --------------------------------DLNLWISRPFLRCRREDIRSFLLQRNIS 187
                                           D  +++ RPF    +  + S  LQ NI 
Sbjct: 222 HNRERPDESQLKQAWGINPNTPHSNDILLPISDGGIYLFRPFSSFPKSRLTSTCLQNNIK 281

Query: 188 WCEDPSNTDDRFE-RVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +  D +N D     R  +R  +      R +   ++   ++  + +  ++N    + + K
Sbjct: 282 FAIDKTNFDPTVTSRNTLRYLLSNDMLPRALRAPSILQLIENSKQVSEELNRQSNIFLRK 341


>gi|261838040|gb|ACX97806.1| hypothetical protein KHP_0599 [Helicobacter pylori 51]
          Length = 338

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS+ L   L           I F    VD+  ++  
Sbjct: 3   ARDFKTYLEPLREKKNLLGFSGGLDSICLFHLLVE-------ENIAFDIALVDYNTQKQR 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 56  LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++     
Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK-- 166

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +  + ED SN+  +F+R   R+   +  +  
Sbjct: 167 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 197


>gi|332673472|gb|AEE70289.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Helicobacter pylori 83]
          Length = 343

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 8   ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ENIAFDTALVDYNTQKQR 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 61  LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++     
Sbjct: 119 HLNDRLEWFLMQLS-----KGSGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK-- 171

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +  + ED SN+  +F+R   R+   +  +  
Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202


>gi|94266523|ref|ZP_01290211.1| PP-loop [delta proteobacterium MLMS-1]
 gi|93452852|gb|EAT03372.1| PP-loop [delta proteobacterium MLMS-1]
          Length = 382

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 126/372 (33%), Gaps = 56/372 (15%)

Query: 3   LSPIES-VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           + P+E  VR  V   R +     +LVAVS G DSM LL AL ++    +      +A  +
Sbjct: 1   MHPLEKKVRQAVLGERLITAGERVLVAVSAGPDSMALLYALAALRGVAAMPAFSLAAAYI 60

Query: 59  DHCLRE-TAKDEVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEH 113
           DH LR   +  E   V+     L I             ++    L  AARE RY  + E 
Sbjct: 61  DHGLRPAESGREQELVAIAARELGITWRGGRVTAREYAARHGLSLEHAARELRYRCLQEL 120

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-------------------- 153
           A  + A  +  AH  DDQ E + +R  R  A +G+                         
Sbjct: 121 AGELAANTLAVAHQADDQAEELLLRLLRGTAREGLSGMAWSRLLADAGSGSAGPGIGGGA 180

Query: 154 ----------------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                                 D  L + RP L   + +I S+L +R I   ED SN D 
Sbjct: 181 DATFSKAEAVGAEPAAPRPAGVDNGLRLIRPLLAAPKAEILSYLARRGIVHAEDSSNQDR 240

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI-------I 250
           RF R RVR  +           + +       +      L+ +   V  R         +
Sbjct: 241 RFLRNRVRLELLPWLAERFNPNIGETLRRTATILRDEEELLAQQAAVAYRQARQPGDNPV 300

Query: 251 AISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVS--IGRVV 308
           A+   + +     L   L             P  R +E+++        G ++     V 
Sbjct: 301 ALDLAVFSAQPRALRRRLLEKTLWE--LAVKPLTRQIEQLLQGAAKPGGGVIAHLAAGVT 358

Query: 309 IDRRANFLWITR 320
           + ++   L   R
Sbjct: 359 VRKQGQILLFER 370


>gi|219682964|ref|YP_002469347.1| tRNA(Ile)-lysidine synthase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|254789033|sp|B8DWC0|TILS_BIFA0 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|219620614|gb|ACL28771.1| tRNA(Ile)-lysidine synthase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|289178276|gb|ADC85522.1| TilS [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 382

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 39/288 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS+ L           +   I+  AI VDH L++ +    +  +  C  L 
Sbjct: 45  VFVACSGGRDSLAL---AACAQVVCAAWGIRCGAIIVDHHLQDASHKVAQQTAQTCRDLG 101

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +    +V  +  +   G+ AAAREARYA +   A+  +AT ++ AHT DDQ E++ +   
Sbjct: 102 LEPVLIVDVQVKERGQGIEAAAREARYAALVGTARRWHATAVLLAHTKDDQAESILIDLI 161

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R         +GM  T L+D ++ + RP L   R           + + +DP+N D    
Sbjct: 162 RAAGTD--AFAGMPQTQLFD-DVLVLRPLLGITRAQTTRICEDEGLEYWDDPTNGDAVPL 218

Query: 197 -----DRF-ERVRVRRFVRD----------------------IDLHALYLKMKKFQDLRV 228
                  +  R RVR  +                         D+ AL  + ++     V
Sbjct: 219 ETALPASYPLRSRVRHDLMPYLSAFAGCDMVDRLARTARIARRDVEALNQEAERALAQTV 278

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
           +    +  L    L          ++ +      + + ++  + A CG
Sbjct: 279 EFEGNMRDLQADRLADDKLGANIDARALERWPEAIRYRVIARTLAACG 326


>gi|312601162|gb|ADQ90417.1| tRNA(Ile)-lysidine synthase [Mycoplasma hyopneumoniae 168]
          Length = 276

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 14/178 (7%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M LL           +         +++ LR  A  E   VS  C +  +   ++S+ + 
Sbjct: 1   MFLL---------NKYKNQDVIVAHINYNLRPEAIFETLLVSKFCQKYNLELKILSFDSF 51

Query: 93  KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
           K +  L +  R  RY    +  K  N T ++  H  DD LETV+++ ++       G+  
Sbjct: 52  KIKKNLQSGLRLGRYQFFEKIYKEFNCTKLLVGHHRDDFLETVFLQKKQKKIVTFWGIHK 111

Query: 153 MCDTILYDLNLWISRPFLRCR-REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
             +      N+ I RPFL  R ++ I     Q+ I + +D SN   +++R ++R  + 
Sbjct: 112 KNNLF----NMEILRPFLYWRTKKQIIRICQQKKIPYLDDQSNFTGKYQRNQIRFLLE 165


>gi|70997431|ref|XP_753463.1| PP-loop family protein [Aspergillus fumigatus Af293]
 gi|66851099|gb|EAL91425.1| PP-loop family protein [Aspergillus fumigatus Af293]
          Length = 709

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 79/273 (28%), Gaps = 72/273 (26%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +AVSGG+DSM L      +        +  +A  VDH  RE +  E R V+   S +   
Sbjct: 100 LAVSGGTDSMALAFLCKQLQEQNLVDGLTVTAFVVDHKAREESSREARTVATWLSDMGKP 159

Query: 84  -------------------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                                 + W      +     AR  R+  +    +    + ++ 
Sbjct: 160 DDDLVNSPGTNSHTGLQAQILALEWPQGSSVSAFETHARRLRFQALGIACRDRRISALLM 219

Query: 125 AHTFDDQLETVYMRS---QRDYAEKGM----------GLSGMCDT------ILYD----- 160
            H  DD +ET   R     R     G+          GL G+ ++         D     
Sbjct: 220 GHHQDDNVETTLWRLCTGARGAGLAGIPPIARIPECHGLYGVSESGSMVILRPRDNSAGA 279

Query: 161 ----------------------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
                                         + + RP L   +  + +   Q  I +  DP
Sbjct: 280 PCARSGSTTTSQVQGKDEGKQPGFPMATGGILLCRPLLAFPKASLLATCHQHRIPYVSDP 339

Query: 193 SNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQ 224
           +N D     R  +R  V       L   ++   
Sbjct: 340 TNFDPTLTPRNAIRSLVSPTFPPRLPRALQAAS 372


>gi|238924073|ref|YP_002937589.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Eubacterium rectale ATCC 33656]
 gi|238875748|gb|ACR75455.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale ATCC 33656]
          Length = 247

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 15/215 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I + VSGG DS+ LL AL  + S       +  AI+VD         ++  V  +C  
Sbjct: 24  DKIAIGVSGGKDSLTLLYALSGIRSFYPVP-FELVAIAVDLG---YEDFDLSPVKALCDE 79

Query: 80  LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           L +   VV       S + SK Q    +   + R   +++ A ++    I  AH  DD +
Sbjct: 80  LSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDII 139

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+++        +G   S    T L    L I RP +     D++ F  + N+  C++P
Sbjct: 140 ETMFLSLL----YEGQFYSFAPVTQLDGSGLAIIRPLMYVGESDVKGFKNKYNLPVCKNP 195

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              D    R  V++ VR ++L    +K + F  ++
Sbjct: 196 CPYDGHTRREYVKQLVRQLNLEIPGVKKRLFSAIQ 230


>gi|183602055|ref|ZP_02963424.1| hypothetical protein BIFLAC_07251 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241190541|ref|YP_002967935.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195947|ref|YP_002969502.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218940|gb|EDT89582.1| hypothetical protein BIFLAC_07251 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240248933|gb|ACS45873.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250501|gb|ACS47440.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793528|gb|ADG33063.1| tRNA(Ile-lysidine synthetase) [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 376

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 65/288 (22%), Positives = 112/288 (38%), Gaps = 39/288 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS+ L           +   I+  AI VDH L++ +    +  +  C  L 
Sbjct: 39  VFVACSGGRDSLAL---AACAQVVCAAWGIRCGAIIVDHHLQDASHKVAQQTAQTCRDLG 95

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +    +V  +  +   G+ AAAREARYA +   A+  +AT ++ AHT DDQ E++ +   
Sbjct: 96  LEPVLIVDVQVKERGQGIEAAAREARYAALVGTARRWHATAVLLAHTKDDQAESILIDLI 155

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD---- 196
           R         +GM  T L+D ++ + RP L   R           + + +DP+N D    
Sbjct: 156 RAAGTD--AFAGMPQTQLFD-DVLVLRPLLGITRAQTTRICEDEGLEYWDDPTNGDAVPL 212

Query: 197 -----DRF-ERVRVRRFVRD----------------------IDLHALYLKMKKFQDLRV 228
                  +  R RVR  +                         D+ AL  + ++     V
Sbjct: 213 ETALPASYPLRSRVRHDLMPYLSAFAGCDMVDRLARTARIARRDVEALNQEAERALAQTV 272

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
           +    +  L    L          ++ +      + + ++  + A CG
Sbjct: 273 EFEGNMRDLQADRLADDKLGANIDARALERWPEAIRYRVIARTLAACG 320


>gi|167846403|ref|ZP_02471911.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei B7210]
          Length = 183

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 7/175 (4%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15  DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTA 125
              + + ++    L            +    G+ A+AR+ARY  +        A  +  A
Sbjct: 70  DAWLAHCAETAQALGARFDAARVDVPRASGQGIEASARDARYRALETMCARYGARTLWLA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
              DDQ ETV ++  R     G+             ++   RP L   R  +  +
Sbjct: 130 QHADDQAETVLLQLLRGAGIAGLAAMA-PQYRPALADVVRMRPLLHLLRAQLERY 183


>gi|161527617|ref|YP_001581443.1| PP-loop domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160338918|gb|ABX12005.1| PP-loop domain protein [Nitrosopumilus maritimus SCM1]
          Length = 304

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 21/251 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VAVSGG DS+ LL  +H + S  +F   +   I++D  +     + +  V   C  L 
Sbjct: 50  VAVAVSGGKDSLALLKIIHEMASSHNF---RIKTITIDEGIPGYRNEALEIVEKFCGELG 106

Query: 82  IAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           + H V S+KN                +T   +     R   I   AK + A +I T H  
Sbjct: 107 VEHKVYSYKNLFELTLDEALDLRENEKTSSCSICGTLRRRAIDHAAKDVGADVIATGHNL 166

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD L+T  +        K     G  +      +L   +PF      +I  +    +I +
Sbjct: 167 DDTLQTFVINMLSGDTNK----IGWMEPDTSSNSLRKIKPFCEIYESEIVFYAFTNDIPF 222

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
             +P    +   R  +R F+  ++     +K   +Q + ++V+N V     K  TV  + 
Sbjct: 223 QSEPCPHMNEGIRTEIREFLNSLEKQHSGIKNNLYQSI-LRVSNIVKETNYKEKTVCKKC 281

Query: 249 IIAISQDILNI 259
               + ++ ++
Sbjct: 282 GSDCTGNVCSV 292


>gi|108773198|ref|YP_635739.1| hypothetical protein RF62 [Chara vulgaris]
 gi|122243769|sp|Q1ACK8|TILS_CHAVU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|77157854|gb|ABA61895.1| hypothetical protein RF62 [Chara vulgaris]
          Length = 330

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 111/282 (39%), Gaps = 18/282 (6%)

Query: 2   FLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           F++ I+ +   +   + L+    IL+AVSGG DS+     L+ +L  R   + +   ++ 
Sbjct: 4   FINLIDRIDHILVERKLLLSKQKILIAVSGGQDSI---FLLNLLLQLRFHWEWEIGIVNC 60

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH   + ++    YVS +  ++ + +      +   +      AR  RY L    A   +
Sbjct: 61  DHMWNQFSQTASLYVSQLACQMNLNYYQCISPSFYRK---EEKARSWRYKLFQRIAYLHD 117

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T+I+TAHT  D++ET++    +     G+  S      +Y   + + RP L   R ++ 
Sbjct: 118 YTIIITAHTASDRVETLFYNLFKGSGLHGL-HSLTWKRQIYKKRIHLVRPLLSTTRGELS 176

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVN 231
               Q  I    D +N + +  R R+R  +          +L     +  +         
Sbjct: 177 QIFKQIQIPLYLDSTNLNVKIYRNRIRYQLLPYLRLFFNRNLDRSIAQFAEILHSESLFL 236

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSA 272
             +  ++   + +  ++   +    +  I   +   +++   
Sbjct: 237 ETLTQILRNKIEIINKNQKILDIQFIRVIPFAIQRRIIKQFL 278


>gi|188527428|ref|YP_001910115.1| hypothetical protein HPSH_03220 [Helicobacter pylori Shi470]
 gi|188143668|gb|ACD48085.1| hypothetical protein HPSH_03220 [Helicobacter pylori Shi470]
          Length = 343

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 16/209 (7%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 8   ARDFKTYLEPLREKKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQR 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 61  LKIIQHAQKLAQTHHKKCYIH--YAPKIECNFEMQARKIRYDFFETLIKEHSYKHLILAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +D+LE   M+  +      +      +   +     I RP L   ++ +++    R  
Sbjct: 119 HLNDRLEWFLMQLSKGAGLNTLLSFQAYEKREF---YAIVRPLLYTPKDTLKTLARDR-- 173

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
            + ED SN+  +F+R   R+   +  +  
Sbjct: 174 EFFEDDSNSSLKFKRNFFRKNYANSLMQH 202


>gi|154504409|ref|ZP_02041147.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149]
 gi|153795338|gb|EDN77758.1| hypothetical protein RUMGNA_01913 [Ruminococcus gnavus ATCC 29149]
          Length = 245

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +    HI V +SGG DS+ LL ALH +       K + SAI+VD         ++  +
Sbjct: 18  RMIEEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KKFELSAITVDLGF---EDFDLSPI 73

Query: 74  SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             +C  L I + + S        + + ++   +   + R   +++  K +    I  AH 
Sbjct: 74  QALCQELNIPYRIESSDIYEILFHVRKESNPCSLCAKMRKGALNQAIKEMGCNKIAYAHH 133

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET+ +        +G   S    T L   +L + RP +    +D+  F  +  + 
Sbjct: 134 KDDIIETMLLSLI----FEGRFYSFSPKTYLDRTDLTVIRPMMFVDEKDVIGFKNKYQLP 189

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             +     D   +R  V+  +R ++     ++ + F  +
Sbjct: 190 VVKSKCPVDGYTKRQYVKELLRQLNHENPGVRERMFHAI 228


>gi|302334896|ref|YP_003800103.1| tRNA(Ile)-lysidine synthetase [Olsenella uli DSM 7084]
 gi|301318736|gb|ADK67223.1| tRNA(Ile)-lysidine synthetase [Olsenella uli DSM 7084]
          Length = 503

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 137/410 (33%), Gaps = 51/410 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------------KFSAISVDHCLRE-TA 66
           A +++ VSGG+D      +   +L+  S   I            +   + V+H LR   A
Sbjct: 28  APVVLMVSGGAD-----SSALLLLAATSTLDIDDGRGVARIARERLHVLHVNHQLRGIDA 82

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAK 115
           +++  +V ++ SR  I  +V     +             +     A   A   L  + ++
Sbjct: 83  EEDEEFVRELSSRYGIPCTVRRVDVAALAREGSGSGANVENAGREARYAAAAELAGQLSR 142

Query: 116 TIN----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
                  A  I+TAHT DD+ ET +M + R    +G+       + +      I RP L 
Sbjct: 143 EFGTPRAAARILTAHTADDRAETFFMNAIRGTGPQGL-------SSIPRRRNLIVRPLLG 195

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL-------HALYLKMKKFQ 224
              E++   L    I W ED +N D R+ R  VR  V  +           L        
Sbjct: 196 RTHEELCDLLRMSGIVWREDKTNADTRYLRSYVRHEVMPVVRARNPRVTANLATTCDLLS 255

Query: 225 DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY 284
           D    +           L      ++A+    L      +   +   A +     +    
Sbjct: 256 DEDSYLGQVAWRSYRDLLRRQSDGMVALDAGRLGAAEVAIARRVVRQAILAVRPDARLEA 315

Query: 285 RSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILY---PEETTVWDGR 341
           R ++RV+  + +G                  L++        T+ L+   P +  + DGR
Sbjct: 316 RHVDRVLGLVAAGGGSASIPLGCDARVEYGLLFVRDHDSGRGTVALWLDVPGQARLPDGR 375

Query: 342 YQFQNLSDSLIQIGPQSYRKA-DVPSGIPPIIAQRALSSMPSKEGGKPLL 390
                L++           +A  V      ++   A   +    GG+  +
Sbjct: 376 GVRARLTEVPTGSRADELARAHAVEWAGESVLLDAASCGLDRASGGRLWV 425


>gi|317177443|dbj|BAJ55232.1| hypothetical protein HPF16_0635 [Helicobacter pylori F16]
          Length = 343

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 8   ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIVFDTALVDYNTQKQR 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 61  LEIIQHAQKLAQVHHKKCYIH--YAPKIECNFEMQARKIRYDFFETLIKEHSYKHLILAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++ +   
Sbjct: 119 HLNDRLEWFLMQL-----GKGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKALVK-- 171

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           ++ + ED SN+  +F+R   R+   +  +  
Sbjct: 172 DLKFFEDDSNSSLKFKRNFFRKNYANSLMQH 202


>gi|206603982|gb|EDZ40462.1| tRNA(Ile)-lysidine synthetase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 504

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 13/198 (6%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYV 73
           +   P H   A+SGG+DS    + L  +L      +   + +  +H  R    +++  ++
Sbjct: 35  NHQSPPHFHAAISGGADS----LFLAFLLHLFLEKRHPLTLLHFNHRTRGMENEEDEIFL 90

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +    +     +       P        R+ RYA      +  +  ++   H  DDQ+E
Sbjct: 91  RNFAQHIGRPLRIGVLSEPVPDHLSEDFLRKKRYAFFDTVLRENSNNILFLGHHQDDQVE 150

Query: 134 TVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T+ M   R    KG +G+    D  ++       RP L  R ++IR  L   +I +  D 
Sbjct: 151 TILMNLFRGTGPKGVLGMLNKPDRRIF-------RPLLELRADEIRKILSDYDIPYRMDS 203

Query: 193 SNTDDRFERVRVRRFVRD 210
           SN    + R RVR  +  
Sbjct: 204 SNLHRDYLRNRVRLELVP 221


>gi|281356157|ref|ZP_06242650.1| tRNA(Ile)-lysidine synthetase [Victivallis vadensis ATCC BAA-548]
 gi|281317526|gb|EFB01547.1| tRNA(Ile)-lysidine synthetase [Victivallis vadensis ATCC BAA-548]
          Length = 813

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 116/324 (35%), Gaps = 14/324 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDV 76
               + V  SGG+DS   L+              + +AI  DH LR   +  E       
Sbjct: 14  QHGRLFVGFSGGADSTAALLVARRFQE---IFHYRLTAIHFDHGLRGAESAAEAEAAQRF 70

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
                I   +V    S P  GL + AR AR  +  E  +    + ++  H   D+ E + 
Sbjct: 71  ARNCAIEFRLVRLALS-PGPGLESRARAARLDVWKELVRENPGSAVILGHHAGDRAENLL 129

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-WCEDPSNT 195
           +R  R       GL+ M      D N+   RP L   R +I  FL +  IS W  D SN 
Sbjct: 130 LRLARGS--NATGLTSMRSRSEVD-NVIFLRPLLGFARTEIEEFLHENGISEWARDSSNA 186

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           ++RF R  +R  +       L       +   + V    A  + +      R +   +  
Sbjct: 187 ENRFRRNLLRNRLLPEFYAKLPGSEAGLRH-SLDVLELDAEFLEQEAERRFRELDGSAAF 245

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR-GCVSI--GRVVIDRR 312
              +   LL  +LR+      G   +P    + R+   L + K    +      + +  +
Sbjct: 246 WRKLHPALLVRVLRLWFRAELGTDLIPPPELVRRLQSELNAPKPEPRLIPVHSGISLRLQ 305

Query: 313 ANFLWITRAVRNLPTLILYPEETT 336
            + L I  A   LP L    ++ T
Sbjct: 306 GDTLQIA-AAAALPRLTWKFDQET 328


>gi|294155987|ref|YP_003560371.1| tRNA(Ile)-lysidine synthase [Mycoplasma crocodyli MP145]
 gi|291600488|gb|ADE19984.1| tRNA(Ile)-lysidine synthase [Mycoplasma crocodyli MP145]
          Length = 289

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 14/190 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             L+A+SGG DSM LL        +         A  V++  RE +  + + VSD C + 
Sbjct: 5   KYLIALSGGPDSMFLL--------NEYSKNNNVVACFVNYNQREDSCVDEQIVSDFCKKN 56

Query: 81  RIAHSVVSW-KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
            I    +   K    +      AR  R+    +         ++ AH  DD LE+ Y++ 
Sbjct: 57  NIILYKLVLNKIDYQKGNFQDWARTKRFDFFKDIYDKECCDALLIAHHKDDFLESYYLQK 116

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNTDDR 198
                    G+     T +Y +++   +P L +  ++ I  F  + NI +  D SN  D+
Sbjct: 117 NSSRLRITYGMK--QKTFIYGMHVE--KPLLFKYFKKQILEFNDKHNIPYAIDKSNFSDK 172

Query: 199 FERVRVRRFV 208
           ++R  +R  +
Sbjct: 173 YQRNIIRHKL 182


>gi|317178918|dbj|BAJ56706.1| hypothetical protein HPF30_0609 [Helicobacter pylori F30]
          Length = 343

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 8   ARDFKTYLEPLREGKNLLGFSGGLDSTCLFHLLVE-------ESIAFDTALVDYNTQKQR 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K +      AR+ RY       K  +   ++ AH
Sbjct: 61  LEIIQHAQKLAQAHHKKCYIH--YAPKIERNFEMQARKIRYDFFETLIKEHSYKHLILAH 118

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++     
Sbjct: 119 HLNDRLEWFLMQL-----GKGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK-- 171

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +  + ED SN+  +F+R   R+   +  +  
Sbjct: 172 DWEFFEDDSNSSLKFKRNFFRKNYANSLMQH 202


>gi|25029100|ref|NP_739154.1| hypothetical protein CE2544 [Corynebacterium efficiens YS-314]
 gi|259505902|ref|ZP_05748804.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           efficiens YS-314]
 gi|61216660|sp|Q8FMG0|TILS_COREF RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|23494387|dbj|BAC19354.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166506|gb|EEW51060.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           efficiens YS-314]
          Length = 313

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/267 (20%), Positives = 99/267 (37%), Gaps = 27/267 (10%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++R  +R+ +   H+ + +SGG DS+ L+ A  +  ++        +AI ++H L+E + 
Sbjct: 19  TLRVAIRAHLTD-HVHIGLSGGPDSLALVAAARAEGAE-------VTAICINHNLQEGSA 70

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +     +     +     + S     P   + A AREARYA  ++         I   HT
Sbjct: 71  EVSERAAAQAEHMGATALIRSITV--PPGSMEAQAREARYAEFAQL-----TDTIWAGHT 123

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET  +   R              +     +L + RP L  RR D      +  ++
Sbjct: 124 MDDQAETFLLAGLRGNPAG-------MKSASRRPDLTVIRPLLGVRRADTHGACTELGLT 176

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH----ALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             +DP N D  F RV +R  V  +            +            A+   + K   
Sbjct: 177 PWQDPQNRDRAFRRVAIREQVLPLLAEIHAGDPVPGLALAATRAAMEGEALEFFVDKRRG 236

Query: 244 VHMRSI-IAISQDILNIDSTLLFYLLR 269
                  + ++ +   +   +L   LR
Sbjct: 237 EWADGFPVRLAAEPHALRRLMLADFLR 263


>gi|225567970|ref|ZP_03776995.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM
           15053]
 gi|225163258|gb|EEG75877.1| hypothetical protein CLOHYLEM_04043 [Clostridium hylemonae DSM
           15053]
          Length = 245

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 14/214 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI V +SGG DS+ LL ALH +       K + SA++VD      ++ +   V  +C 
Sbjct: 23  GDHIAVGISGGKDSLTLLYALHGLRRFYP-NKFELSAVTVDLG---YSECDFTPVIKLCK 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + + +V           + ++   +   + R   +++  K +    +  AH  DD +
Sbjct: 79  ELGVPYRIVKTDIAHILFEERKESNPCSLCAKMRKGALNQAVKEMGCNKVAYAHHKDDII 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   S    T L  ++L + RP +     DI  F  + ++      
Sbjct: 139 ETMLLSLL----FEGRFYSFSPRTYLDRMDLTVIRPVMFVDEADIIGFKNKYDLPVVTSR 194

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              D   +R   +  V+ ++      + + F  +
Sbjct: 195 CPIDGYTKRQYAKELVKQLNDEHPGARQRMFTAV 228


>gi|255076007|ref|XP_002501678.1| predicted protein [Micromonas sp. RCC299]
 gi|226516942|gb|ACO62936.1| predicted protein [Micromonas sp. RCC299]
          Length = 780

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 11/198 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P  + +++SGG DSM L   L +     SFG     A+ +D+  R  +  E  +V   C
Sbjct: 294 RPRSVAISLSGGVDSMVLATILKAAAP--SFGDFDVVAMHIDYANRPESGKEADFVRGWC 351

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            R  I   V      K    P+    A +R  RY L  E AKT     +   H   D  E
Sbjct: 352 ERKGIVCVVRRIAEVKRGVTPREQYEAESRAIRYGLYKECAKTHGFPAVFVGHHEGDVQE 411

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            +     R      +G++GM +  + +  + I RP L   ++ +  F     + +  D +
Sbjct: 412 NIIANIFRGANV--LGMNGMNEEGVVE-GVRIWRPMLPHSKDPVLDFAHTFGVPYFLDTT 468

Query: 194 NTDDRFERVRVRRFVRDI 211
            T     R ++R  +  +
Sbjct: 469 PTWS--TRGKLRNQLLPL 484


>gi|153814901|ref|ZP_01967569.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756]
 gi|145847932|gb|EDK24850.1| hypothetical protein RUMTOR_01116 [Ruminococcus torques ATCC 27756]
          Length = 250

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 14/217 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +    HI V +SGG DS+ LL ALH +       K   SA++VD      A   +  + +
Sbjct: 26  IQEGDHIAVGISGGKDSLTLLYALHGLKRFYPR-KFDLSAVTVDLGF---ADFNLEPIQN 81

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +C  L + + +V         N + ++   +   + R   ++E  K +    +  AH  D
Sbjct: 82  LCRELEVPYKIVKSDIYDILFNVRQESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKD 141

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ +        +G   S    T L  ++L + RP +     ++  F  + ++   
Sbjct: 142 DIIETMLLSLI----FEGRFYSFSPKTYLDRMDLTVIRPMMFIDEMEVIGFRNKYSLPVV 197

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           +     D   +R   +  +R+++      K + F  +
Sbjct: 198 KGKCPVDGHTKRQYAKELLRELNKEHPGTKERMFHAI 234


>gi|291536194|emb|CBL09306.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Roseburia intestinalis M50/1]
          Length = 244

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 90/216 (41%), Gaps = 14/216 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I + +SGG DS+ LL AL  +       K    A++VD         ++  VS +C
Sbjct: 22  SGDKIAIGISGGKDSLTLLYALSGLRRFYP-QKFDLVAVTVDLG---YENFDLTAVSKLC 77

Query: 78  SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             L + + +V+ +        + +    +   + R   +++  K +    +  AH  DD 
Sbjct: 78  HDLDVPYHIVNTEIAKILFEERNEKPTCSLCAKMRKGALNQAIKELGCNKVAYAHHMDDV 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++        +G        T + D +L I RP +     +++ F  +  +   ++
Sbjct: 138 IETAFLSMI----FEGRFYVFPPKTYMEDSDLTIIRPLIYVSEAEVKGFRNKYQLPVVKN 193

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P   D   +R  V++ ++ +++    +K K F  ++
Sbjct: 194 PCPMDGNTKREYVKKLIQQLNIDNPGVKTKLFHAIQ 229


>gi|317500413|ref|ZP_07958637.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089580|ref|ZP_08338479.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898168|gb|EFV20215.1| PP-loop family protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404948|gb|EGG84486.1| hypothetical protein HMPREF1025_02062 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 244

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 14/217 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +    HI V +SGG DS+ LL ALH +       K   SA++VD      A   +  + +
Sbjct: 20  IQEGDHIAVGISGGKDSLTLLYALHGLKRFYPR-KFDLSAVTVDLGF---ADFNLEPIQN 75

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +C  L + + +V         N + ++   +   + R   ++E  K +    +  AH  D
Sbjct: 76  LCRELEVPYKIVKSDIYDILFNVRQESNPCSLCAKMRKGALNEAVKEMGCNKVAYAHHKD 135

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ +        +G   S    T L  ++L + RP +     ++  F  + ++   
Sbjct: 136 DIIETMLLSLI----FEGRFYSFSPKTYLDRMDLTVIRPMMFIDEMEVIGFRNKYSLPVV 191

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           +     D   +R   +  +R+++      K + F  +
Sbjct: 192 KGKCPVDGHTKRQYAKELLRELNKEHPGTKERMFHAI 228


>gi|254284141|ref|ZP_04959109.1| tRNA(Ile)-lysidine synthase [gamma proteobacterium NOR51-B]
 gi|219680344|gb|EED36693.1| tRNA(Ile)-lysidine synthase [gamma proteobacterium NOR51-B]
          Length = 358

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 8/231 (3%)

Query: 92  SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
               + +   AREARY    +         +  AH  DDQ+ETV  R  R    +G  L 
Sbjct: 4   GDESSAIEVRAREARYRAFDDAV--GQGEALFQAHHLDDQVETVLYRLLRGSGPRG--LR 59

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
           G+           + RP L   R ++ +F     +S+ +DPSN D RF+R  +R  V  +
Sbjct: 60  GIPAERSLTRG-KVVRPLLDIGRLELLNFCRDARLSFVQDPSNDDFRFDRNYLRHAVLPV 118

Query: 212 DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
                              N  V  L  + L + +  +          DS       R+ 
Sbjct: 119 IEQRWPGYRATLSRAAATQNLMVTWLEEEGLHIEVGLMGDPGISFDRTDSDPQRLATRLH 178

Query: 272 AAICGGQISLPGYRSM---ERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319
             +    +S+P  R +    R  +F ++ ++  +++G  V++     ++  
Sbjct: 179 HWLATEGLSVPDQRRLVEFARQAMFARADRQPRLALGPTVLESWRGVIYWH 229


>gi|323702949|ref|ZP_08114606.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532080|gb|EGB21962.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 252

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 86/233 (36%), Gaps = 15/233 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVD 59
           +FL+ +       + +     ++V VSGG DS  LL  L+            +  A+ +D
Sbjct: 8   LFLTQVTRAISHFKMIEPGDKVVVGVSGGKDSSTLLFFLNMYRHRYLKKIPFELHAVHLD 67

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEH 113
             L      ++  + + C RL I  ++          + + +T   A     R   +   
Sbjct: 68  MGL----GADLAPLKEFCHRLNIPLTIKKTDIGTILFDIRKETNPCALCANLRRGALHNT 123

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
              +    +  AH  DD +ET +M    +   K    +    T L   +L + RPF+   
Sbjct: 124 TLELGFNKVALAHHLDDVMETFFMSLIFNGNMK----TFAPKTYLDRTDLTVIRPFIYVT 179

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            + +   +   NI    +P   + + +R  ++  V ++      ++ K    L
Sbjct: 180 EDQVLELVDLENIPVVHNPCPANKKTKREEIKHLVDNLAQTYPDIRQKFLTSL 232


>gi|293191233|ref|ZP_06609166.1| tRNA(Ile)-lysidine synthetase [Actinomyces odontolyticus F0309]
 gi|292820654|gb|EFF79623.1| tRNA(Ile)-lysidine synthetase [Actinomyces odontolyticus F0309]
          Length = 215

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 7/192 (3%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+   S+  F+  +  P  ++V +SGG+DS+ L +    V +      I    ++VDH L
Sbjct: 22  LAVRASLTSFIDKVGAPPALVVGLSGGADSLALALTTIDVAAR---AGIPVVTVTVDHGL 78

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  + +E R V+D    L     V +     P  G   +AR+AR A +   A+   A  I
Sbjct: 79  RAGSGEEARCVADRAESLGARAVVETVSVEGPG-GPEGSARDARRAALRAVAQREGAP-I 136

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  HT DDQ ETV +R  R        L  +      D  +   RP L  RR D      
Sbjct: 137 LLGHTMDDQAETVLLRLARGSGP--SSLRAIAPVSRDDDGVTWLRPLLGLRRTDTEQACA 194

Query: 183 QRNISWCEDPSN 194
           Q  ++  +DP+N
Sbjct: 195 QAGLTPIQDPTN 206


>gi|33596889|ref|NP_884532.1| hypothetical protein BPP2286 [Bordetella parapertussis 12822]
 gi|61216608|sp|Q7W859|TILS_BORPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33573590|emb|CAE37584.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 344

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 110/332 (33%), Gaps = 35/332 (10%)

Query: 9   VRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           V   +R+L   PA + VAVSGG+DS      L    +             V H L+  A 
Sbjct: 24  VAAALRALDPAPARLAVAVSGGADS----AMLAVAAAAVLPPGCTLRLFHVHHGLQAAAD 79

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAH 126
                V  + + L +            Q  G+ AAAR ARY  ++  A+      I+ AH
Sbjct: 80  QWAAQVRGLGALLGVPVDEARVTVPPGQGLGMEAAARLARYQALAGLARQHGVRHILLAH 139

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL----L 182
             +DQ ETV +R  R    +GM        +     +   RP+L   R  I +       
Sbjct: 140 HRNDQAETVLLRLLRGTGLQGMAAM---APLSERDGVAYLRPWLDVDRAAILALAGAVRA 196

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           Q      +DP+NTD R+ R  VR  +      AL  +   +Q +  +    +A       
Sbjct: 197 QCGWQAVQDPTNTDPRYARAAVRTQLAP----ALDARWPGWQAIVARHARQMAEAAEIVA 252

Query: 243 TVHMRSIIAISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            V       +                + +      LR   A       +P    +  +  
Sbjct: 253 EVARADFDTLEPADAGRSFSLAAWRGLSAARQAQALRHWLA--SQDAPMPTEARLAELQR 310

Query: 293 FLKS------GKRGCVSIGRVVIDRRANFLWI 318
            L+        +         V+      +WI
Sbjct: 311 QLRQLHALGHDRHLRWQHAGRVVRCERGRVWI 342


>gi|33600723|ref|NP_888283.1| hypothetical protein BB1738 [Bordetella bronchiseptica RB50]
 gi|61216609|sp|Q7WLK7|TILS_BORBR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33568323|emb|CAE32235.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 344

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 110/332 (33%), Gaps = 35/332 (10%)

Query: 9   VRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           V   +R+L   PA + VAVSGG+DS      L    +             V H L+  A 
Sbjct: 24  VAAALRALDPAPARLAVAVSGGADS----AMLAVAAAAALPPGCTLRLFHVHHGLQAAAD 79

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAH 126
                V  + + L +            Q  G+ AAAR ARY  ++  A+      I+ AH
Sbjct: 80  QWAAQVRGLGALLGVPVDEARVTVPPGQGLGMEAAARLARYQALAGLARQHGVRHILLAH 139

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL----L 182
             +DQ ETV +R  R    +GM        +     +   RP+L   R  I +       
Sbjct: 140 HRNDQAETVLLRLLRGTGLQGMAAM---APLSERDGVAYLRPWLDVDRAAILALAGAVRA 196

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           Q      +DP+NTD R+ R  VR  +      AL  +   +Q +  +    +A       
Sbjct: 197 QCGWQAVQDPTNTDPRYARAAVRTQLAP----ALDARWPGWQAIVARHARQMAEAAEIVA 252

Query: 243 TVHMRSIIAISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVML 292
            V       +                + +      LR   A       +P    +  +  
Sbjct: 253 EVARADFDTLEPADAGRSFSLAAWRGLSAARQAQALRHWLA--SQDAPMPTEARLAELQR 310

Query: 293 FLKS------GKRGCVSIGRVVIDRRANFLWI 318
            L+        +         V+      +WI
Sbjct: 311 QLRQLHALGHDRHLRWQHAGRVVRCERGRVWI 342


>gi|306823453|ref|ZP_07456828.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Bifidobacterium dentium ATCC 27679]
 gi|309802756|ref|ZP_07696860.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium dentium JCVIHMP022]
 gi|304553160|gb|EFM41072.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Bifidobacterium dentium ATCC 27679]
 gi|308220820|gb|EFO77128.1| tRNA(Ile)-lysidine synthetase [Bifidobacterium dentium JCVIHMP022]
          Length = 366

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 114/295 (38%), Gaps = 33/295 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L     +V +      ++  AI +DH L+  + +     +  C  L 
Sbjct: 45  IMVACSGGRDSMALAAVCATVCASLG---LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +    V + +    + GL AAAREARYA I E     +A  ++ AHT +DQ ETV +   
Sbjct: 102 LDPVRVRAIEVHGNEQGLEAAAREARYAAIVEECS--DAAAVLLAHTKNDQAETVLIGLL 159

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF- 199
           R        ++GM  +   D  +   RP+L   RE+         + W +DP+N  D   
Sbjct: 160 RSAGLD--AIAGMEGSFSRD-GVTFLRPWLDVTREETTGICEDLGLEWWDDPTNGPDAIR 216

Query: 200 ---------------ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236
                           R RVR  +            +  L +     Q  R  +N     
Sbjct: 217 EDGLPPNGPLPANYPLRSRVRHDLMPYLQRFAGGDVVSRLSIGAGLAQTDRDYLNRRAQE 276

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
           +  + +T     +      + +    +   ++  +    G   S    R ++R++
Sbjct: 277 IAERAVTFSEDQVRFSVGVLQSQHEAIRLRVIAHALGQAGIACSARHVRQIDRLI 331


>gi|283455476|ref|YP_003360040.1| lysidine synthetase [Bifidobacterium dentium Bd1]
 gi|283102110|gb|ADB09216.1| Putative lysidine synthetase [Bifidobacterium dentium Bd1]
          Length = 366

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 113/295 (38%), Gaps = 33/295 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L     +V +      ++  AI +DH L+  + +     +  C  L 
Sbjct: 45  IMVACSGGRDSMALAAVCATVCASLG---LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +    V + +      GL AAAREARYA I E     +A  ++ AHT +DQ ETV +   
Sbjct: 102 LDPVRVRAIEVHGNGQGLEAAAREARYAAIVEECS--DAAAVLLAHTKNDQAETVLIGLL 159

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF- 199
           R        ++GM  +   D  +   RP+L   RE+         + W +DP+N  D   
Sbjct: 160 RSAGLD--AIAGMEGSFSRD-GVTFLRPWLDVTREETTGICEDLGLEWWDDPTNGPDAIR 216

Query: 200 ---------------ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236
                           R RVR  +            +  L +     Q  R  +N     
Sbjct: 217 EDGLPPNGPLPANYPLRSRVRHDLMPYLQRFAGGDVVSRLSIGAGLAQTDRDYLNKRAQE 276

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
           +  + +T     +      + +    +   ++  +    G   S    R ++R++
Sbjct: 277 IAERAVTFSEDQVRFSVGVLQSQHEAIRLRVIAHALGQAGIACSARHVRQIDRLI 331


>gi|22711981|ref|NP_683805.1| hypothetical chloroplast RF62 [Chaetosphaeridium globosum]
 gi|61216673|sp|Q8M9Y1|TILS_CHAGL RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|22416985|gb|AAM96585.1| hypothetical chloroplast RF62 [Chaetosphaeridium globosum]
          Length = 341

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 40/224 (17%)

Query: 15  SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L+ P   IL+A+SGG DS+ LL  L  +       K K S I  DH     +K++  ++
Sbjct: 20  NLLKPKKSILIAISGGQDSIVLLKILSILQIQ---WKWKLSIIYCDHQWNIYSKNQAFHL 76

Query: 74  SDVCSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             V  ++ I     V+ K  + +      AR  RY++    A      +I+TAH+  D++
Sbjct: 77  YKVSFQMGIPFYHGVTIKPLRTEKS----ARIWRYSVFQRIASISKFNVIVTAHSSTDRV 132

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYD-------------------------------L 161
           ET      R    +G+        I ++                                
Sbjct: 133 ETFLYNLFRGTGVQGLQSLTWKKNIQFEILPNFARSKKSFDLKILSLESKNGIQTYSDYN 192

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
            L + RP L   R ++  F    N+    D +N +    R R+R
Sbjct: 193 KLQLIRPLLNITRTELGKFCSNENLPLWPDLTNYNLSIIRNRIR 236


>gi|291522347|emb|CBK80640.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Coprococcus catus GD/7]
          Length = 248

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 82/219 (37%), Gaps = 14/219 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +     I + VSGG DS+ +L AL  +         +  AI+V   L      +   V
Sbjct: 18  QMIDEGDKIAIGVSGGKDSLTMLYALKGLQRFYP-KHFELEAITVGLGL-GNFNMDA--V 73

Query: 74  SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             +C+ L I +++VS +      + + +    +   + R   ++  A  +    I   H 
Sbjct: 74  KSLCNELNIPYTIVSTEIGPIIFDQRHEKNPCSLCAKMRKGALNNKALELGCNKIAYGHH 133

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET+ M        +G   +    T L    L + RP L     DI  F  ++N+ 
Sbjct: 134 RDDLVETMLMSLI----YEGHFYAFPPVTKLERTGLTVIRPLLYMTEPDIIGFARKQNLP 189

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             + P   +    R   +  +  I+        K F  +
Sbjct: 190 VAKSPCPANGHTRREYTKNLMHQINRENPGAIDKMFTAI 228


>gi|302870332|ref|YP_003838969.1| tRNA(Ile)-lysidine synthetase [Micromonospora aurantiaca ATCC
           27029]
 gi|302573191|gb|ADL49393.1| tRNA(Ile)-lysidine synthetase [Micromonospora aurantiaca ATCC
           27029]
          Length = 316

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 115/317 (36%), Gaps = 14/317 (4%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L     +LVA SGG+     L    +          +   ++VDH L+  + 
Sbjct: 4   AVRRVLTGLPGGGPVLVACSGGA---DSLALAAATAFVAPRLGRQAGLVTVDHGLQAGSA 60

Query: 68  DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +    V+D      +    V+  +      G  AAAREARY  +   A   +A  ++  H
Sbjct: 61  ERAEAVADWARAEGLDPVEVLPVRVDGRPGGPEAAAREARYEALIAAAHRFDAVGVLLGH 120

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T D+Q ETV +   R    +G  LSGM +    D  + + RP L   R + R+      +
Sbjct: 121 TRDEQAETVLLALARGAGPRG--LSGMPERRDVD-GVPLLRPLLDVPRANTRAACEALGL 177

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYL-----KMKKFQDLRVKVNNAVAMLIPKY 241
               DP N D  + R RVR  V    + AL         +    L        A+     
Sbjct: 178 DPWADPHNADPAYARARVRSDVLPGLVDALGPGVVANLARTAGLLAADNAALDALADAAL 237

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS--GKR 299
                R        +  + + +   +L   A   G   +   +R +  +   + +  G+ 
Sbjct: 238 ADARTREGGLSVAGLAELPAAVRTRVLHTWARELGAAPAALSHRHVAALDALVTAWRGQG 297

Query: 300 GCVSIGRVVIDRRANFL 316
                G   + R A  L
Sbjct: 298 PVHLPGNHQVRRHAGHL 314


>gi|298736428|ref|YP_003728954.1| cell cycle protein MesJ [Helicobacter pylori B8]
 gi|298355618|emb|CBI66490.1| cell cycle protein MesJ [Helicobacter pylori B8]
          Length = 338

 Score =  136 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 20/203 (9%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R F   L  +     L+  SGG DS+ L   L           I F    VD+  ++ 
Sbjct: 2   TARDFKNYLEPLREGKNLLGFSGGLDSVCLFHLLVG-------ENIAFDIALVDYNTQKQ 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + +++   +         +      K        AR+ RY       K  +   ++ A
Sbjct: 55  RLEIIQHAQTLAKTHHKKCHIH--YAPKIARNFEMQARKIRYDFFEALTKEHSYKHLILA 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQ 183
           H  +D+LE   M+       KG GL+ +     Y+      I RP L   ++ +++    
Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLGFQAYEKRESYAIVRPLLYTPKDTLKTLAKD 167

Query: 184 RNISWCEDPSNTDDRFERVRVRR 206
               + ED SN+  +F+R   R+
Sbjct: 168 HK--FFEDDSNSSLKFKRNFFRK 188


>gi|167648379|ref|YP_001686042.1| tRNA(Ile)-lysidine synthetase [Caulobacter sp. K31]
 gi|167350809|gb|ABZ73544.1| tRNA(Ile)-lysidine synthetase [Caulobacter sp. K31]
          Length = 455

 Score =  136 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 132/389 (33%), Gaps = 52/389 (13%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V  SGG DS+ LLI             +     +VDH L   +             L   
Sbjct: 24  VGFSGGGDSLALLILARDWARAHGRAVLSL---TVDHQLNPDSAAWTAAAVARAQALGAQ 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
              ++W   KP  GL AAAR AR+AL+++ A+   A +++  HT DD  E   MR++   
Sbjct: 81  ARALAWTGDKPSIGLPAAARAARHALLADAAREAGARVLLLGHTADDIAEAAAMRAEGST 140

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
                  S           +++ RP L   R +IR +L  R  +W +DP+N D  + R R
Sbjct: 141 VSDPRDWSP-SPAWPEGRGVFVLRPLLEVGRGEIREWLSARGETWLDDPANDDLNYARAR 199

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
            R+ +             + +D     +  ++ +          +        L +  T 
Sbjct: 200 ARQSLSSR-------TSAQREDPGPTRSAVLSTVPDLRFATSGMTSEETGAGYLVLPRTA 252

Query: 264 LFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA-- 321
               +  +     G  + P    + R++  +++G+    ++    I+     +   R   
Sbjct: 253 PAARVAAACLCAAGTSTPPRGERLRRLVDRIRAGEDFTATLAGARIEAAGEAVSFFREPG 312

Query: 322 --VRNLPTLI------------------------------------LYPEETTVWDGRYQ 343
              R+ P  +                                    L   +  VWDGRY+
Sbjct: 313 EARRSKPPPVGEVSAQPTEGGVVERPTPPPTGPSGRLPHGGRGYLALPVGQPIVWDGRYE 372

Query: 344 FQNLSDSLIQIGPQSYRKADVPSGIPPII 372
               +  L  + P     A +P      +
Sbjct: 373 ITAAAPGLT-VRPLQGLAARLPPAQRQAL 400


>gi|308184511|ref|YP_003928644.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori SJM180]
 gi|308060431|gb|ADO02327.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori SJM180]
          Length = 338

 Score =  136 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 76/209 (36%), Gaps = 16/209 (7%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R F   L  +     L+  SGG DS  L   L           I F    VD+  ++ 
Sbjct: 2   TARDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQ 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + +++   +         +      K        AR+ RY       K  +   ++ A
Sbjct: 55  RLEIIQHAQTLAKTHHKKCYIH--YAPKIARNFEMQARKVRYDFFETLIKEHSYKHLILA 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +D+LE   M+  +      + LS          +  I RP L   ++ +++     +
Sbjct: 113 HHLNDRLEWFLMQLSKGSGLNTL-LSFQA--YEKRESYAIVRPLLYTPKDTLKTLAK--D 167

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           + + ED SN+  +F+R   R+   +  + 
Sbjct: 168 LKFFEDDSNSSLKFKRNCFRKHYANALMQ 196


>gi|317010948|gb|ADU84695.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori SouthAfrica7]
          Length = 338

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 20/202 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           V+ F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 3   VQDFKTYLEPLREGQNLLGFSGGVDSTCLFHLLVQ-------ENIAFDIALVDYNTQKQR 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K        AR+ RY       K  +   ++ AH
Sbjct: 56  LEIIKHAQKLAQTHHKKCYIH--YAQKITHDFEMQARKIRYDFFETLIKEHSYKHLILAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++     
Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEQRGFYAIVRPLLYTPKDTLKTLFKDM 168

Query: 185 NISWCEDPSNTDDRFERVRVRR 206
              + ED SN   +F+R   R+
Sbjct: 169 K--FFEDDSNASLKFKRNFFRK 188


>gi|210134929|ref|YP_002301368.1| tRNA(Ile)-lysidine synthetase [Helicobacter pylori P12]
 gi|210132897|gb|ACJ07888.1| tRNA(Ile)-lysidine synthetase [Helicobacter pylori P12]
          Length = 338

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 18/201 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+  SGG DS  L   L           I F    VD+  ++   + +++   +
Sbjct: 13  LREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQRLEIIQHAQTL 65

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
                    +      K        AR+ RY       K      ++ AH  +D+LE   
Sbjct: 66  AKTHHKKCYIH--YAPKIARNFEMQARKIRYDFFETLIKEHPYKHLILAHHLNDRLEWFL 123

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           M+       KG GL+ +     Y+   +  I RP L   ++ +++     N+ + ED SN
Sbjct: 124 MQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAK--NLKFFEDDSN 176

Query: 195 TDDRFERVRVRRFVRDIDLHA 215
           +  +F+R   R+   +  +  
Sbjct: 177 SSLKFKRNCFRKHYANALMQH 197


>gi|296392832|ref|YP_003657716.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985]
 gi|296179979|gb|ADG96885.1| tRNA(Ile)-lysidine synthetase [Segniliparus rotundus DSM 44985]
          Length = 330

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 63/269 (23%), Positives = 99/269 (36%), Gaps = 22/269 (8%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
             +     A + VA+SGG+DS+ L  AL               A+ VDH L+  +     
Sbjct: 27  LAQHAPAQARVCVALSGGADSLALTAALAR-------EHTAVEALVVDHGLQPESAQTAA 79

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             + +   L  + S V         GL AAAR A     +   +    + ++  HT DDQ
Sbjct: 80  RAAQLALDLGCSGSRVLPVTVNGAGGLEAAARTA---RQAALRQAGAGSPVLLGHTLDDQ 136

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            ETV +   R    +      +     +D      RP L  RR   R+   +  +   ED
Sbjct: 137 AETVLLGLARGSGPRS-----IQGMRAWDD--PWGRPLLGVRRAMTRAVCAELGVQPHED 189

Query: 192 PSNTDDRFERVRVRRFVRDIDLHAL----YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
           P NTD RF R R+R  V  +    L       + +  D     N  +             
Sbjct: 190 PMNTDPRFVRARLRAEVLPLLEDVLQGGVAEALARTADAVRADNGHLDEEAAAVYAKIGG 249

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICG 276
           + IA++ D+  +   +   +LR+     G
Sbjct: 250 AKIAVT-DVAGLPGPIRRRVLRLWLMGNG 277


>gi|317009260|gb|ADU79840.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori India7]
          Length = 338

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 20/212 (9%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R F   L  +     L+  SGG DS  L   L           I F    VD+  ++ 
Sbjct: 2   TARDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQ 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + +++   +         +      K        AR+ RY       K  +   ++ A
Sbjct: 55  RLEIIQHAQTLAKTHHKKCYIH--YAQKIARNFEMQARKVRYDFFETLIKEHSYKHLILA 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQ 183
           H  +D+LE   M+       KG GL+ +     Y+   +  I RP L   ++ +++    
Sbjct: 113 HHLNDRLEWFLMQLS-----KGSGLNTLLSFQAYEKRGFYAIVRPLLYTPKDTLKTLAKD 167

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +   + ED SN+  +F+R   R+   +  +  
Sbjct: 168 QK--FFEDSSNSSLQFKRNVFRKHYANSLMQH 197


>gi|225572140|ref|ZP_03781004.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040406|gb|EEG50652.1| hypothetical protein RUMHYD_00434 [Blautia hydrogenotrophica DSM
           10507]
          Length = 244

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 14/215 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I V +SGG DS+ LL AL  +         +  AI+VD    +   D    +  +C
Sbjct: 22  KGDKIAVGISGGKDSLTLLYALAGLRRFYP-NPFELEAITVDMGFGDFHTD---KIQQLC 77

Query: 78  SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            +L + ++VV  +        + ++   +   + R   ++E AK +N   I  AH  DD 
Sbjct: 78  DKLEVPYTVVPTEISKIIFQDRKESNPCSLCAKMRKGALNEVAKKLNCNKIAYAHHKDDV 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ +        +G   +    T    ++L + RP L     DI  F  + ++   + 
Sbjct: 138 VETMLLSLI----FEGRFHTFSPMTYWDRMDLTLIRPLLYVDEADIIGFKNKYDLPVEKS 193

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
               D   +R   +  +R ++L    +K + F  +
Sbjct: 194 ACPADGNTKREYAKDLLRTLNLENPGVKQRMFTAI 228


>gi|171741155|ref|ZP_02916962.1| hypothetical protein BIFDEN_00222 [Bifidobacterium dentium ATCC
           27678]
 gi|171276769|gb|EDT44430.1| hypothetical protein BIFDEN_00222 [Bifidobacterium dentium ATCC
           27678]
          Length = 366

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 68/295 (23%), Positives = 114/295 (38%), Gaps = 33/295 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+VA SGG DSM L     +V +      ++  AI +DH L+  + +     +  C  L 
Sbjct: 45  IMVACSGGRDSMALAAVCATVCASLG---LRCGAIIIDHQLQNGSAEVAAKTARRCEALG 101

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +    V + +      GL AAAREARYA I E     +A  +++AHT +DQ ETV +   
Sbjct: 102 LDPVRVRAIEVHGNGQGLEAAAREARYAAIVEECS--DAAAVLSAHTKNDQAETVLIGLL 159

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF- 199
           R        ++GM  +   D  +   RP+L   RE+         + W +DP+N  D   
Sbjct: 160 RSAGLD--AIAGMEGSFSRD-GVTFLRPWLDVTREETTGICEDLGLEWWDDPTNGPDAIR 216

Query: 200 ---------------ERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236
                           R RVR  +            +  L +     Q  R  +N     
Sbjct: 217 EDGLPPNGPLPANYPLRSRVRHDLMPYLQRFAGGDVVSRLSIGAGLAQTDRDYLNKRAQE 276

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVM 291
           +  + +T     +      + +    +   ++  +    G   S    R ++R++
Sbjct: 277 IAERAVTFSEDQVRFSVGVLQSQHEAIRLRVIAHALGQAGIACSARHVRQIDRLI 331


>gi|325661579|ref|ZP_08150203.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472106|gb|EGC75320.1| hypothetical protein HMPREF0490_00937 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 244

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 20/222 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +    HI V +SGG DS+ LL ALH +       K + SAI+VD         E  ++
Sbjct: 18  QMIEEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KKFELSAITVDLGY------EEFHL 70

Query: 74  S---DVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                +C++L + + +V           + ++   +   + R   +++  K +    +  
Sbjct: 71  EPIEKLCAQLEVPYKIVRTDIAHILFEERKESNPCSLCAKMRKGALNDAVKDMGCNKVAY 130

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DD +ET+ +        +G   S    T L  ++L + RP +     D+  F  + 
Sbjct: 131 AHHKDDIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPMMFVDEMDVIGFKNKY 186

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           ++   +     D   +R   +  VR ++      K + F  +
Sbjct: 187 DLPVVKSKCPVDGHTKRQYAKELVRQLNQEHPGAKERMFTAI 228


>gi|314982853|gb|EFT26945.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA3]
 gi|315091171|gb|EFT63147.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA4]
          Length = 311

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 25/322 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + +      D+ +R  +   V           G  AAAR AR A + + A       
Sbjct: 65  QQGSDEVAERTRDLLARRGMDACVRRVDVDAHDPDGPEAAARTARRAALLDVA---GDEP 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +   +DP N D RF R RVR  +  +    L        ++   +  +  +L  + 
Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGP------EVAASLARSATLLAGED 228

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299
             V   + +   +  +N +       + V  A  +    +       ++ V+  L     
Sbjct: 229 EVVARVARMWADEHGVNANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
             V +    ++ R   L++ R 
Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310


>gi|240146321|ref|ZP_04744922.1| PP-loop family protein [Roseburia intestinalis L1-82]
 gi|257201562|gb|EEU99846.1| PP-loop family protein [Roseburia intestinalis L1-82]
          Length = 244

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 90/216 (41%), Gaps = 14/216 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I + +SGG DS+ LL AL  +       K    A++VD         ++  VS +C
Sbjct: 22  SGDKIAIGISGGKDSLTLLYALSGLRRFYP-QKFDLVAVTVDLG---YENFDLTAVSKLC 77

Query: 78  SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             L + + +V+ +        + +    +   + R   +++  K +    +  AH  DD 
Sbjct: 78  HDLDVPYHIVNTEIAKILFEERNEKPTCSLCAKMRKGALNQAIKELGCNKVAYAHHMDDV 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++        +G        T + D +L I RP +     +++ F  +  +   ++
Sbjct: 138 IETAFLSMI----FEGRFYVFPPKTYMEDSDLTIIRPLIYVSEAEVKGFRNKYPLPVVKN 193

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P   D   +R  V++ ++ +++    +K K F  ++
Sbjct: 194 PCPMDGNTKREYVKKLIQQLNIDNPGVKTKLFHAIQ 229


>gi|238061469|ref|ZP_04606178.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. ATCC 39149]
 gi|237883280|gb|EEP72108.1| tRNA(Ile)-lysidine synthetase [Micromonospora sp. ATCC 39149]
          Length = 336

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 7/183 (3%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA SGG+DS+ L  A   V             ++VDH L+  +      V+   +    A
Sbjct: 2   VACSGGADSLALAAAAAFVAPRLGRP---VGLVTVDHALQAGSDRRAADVAAWAAGAGFA 58

Query: 84  HSV-VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
            +  V  + S    G  AAAREARY  + E A+   A  ++T HT DDQ ETV +   R 
Sbjct: 59  PAEAVRVEVSGRPGGPEAAAREARYQALVEAARRHGAAALLTGHTRDDQAETVLLALARG 118

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +G+        +     + + RP L   RE+ R       ++  EDP N D  + R 
Sbjct: 119 AGPRGLAGMPPRRDLC---GVPLLRPLLDVSREETRKACAALGLTPWEDPHNADASYARA 175

Query: 203 RVR 205
           RVR
Sbjct: 176 RVR 178


>gi|109947271|ref|YP_664499.1| hypothetical protein Hac_0697 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714492|emb|CAJ99500.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 349

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 18/196 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+  SGG DS  L   L           I F    VD+  ++   + +++   +
Sbjct: 24  LREGKNLLGFSGGVDSTCLFHLLVK-------ENIAFDIALVDYNTQKQRLEIIKHAQKL 76

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
                    +      K        AR+ RY       +  +   ++ AH  +D+LE   
Sbjct: 77  AKTHHKKCYIH--YAQKITHDFEMQARKIRYDFFETLIREHSYKHLILAHHLNDRLEWFL 134

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           M+       KG GL+ +     Y+   +  I RP L   ++ +++        + ED SN
Sbjct: 135 MQLS-----KGAGLNTLLSFQAYEKRGFYAIVRPLLYTSKDILKTLAKDMK--FFEDFSN 187

Query: 195 TDDRFERVRVRRFVRD 210
              +F+R   R+   +
Sbjct: 188 YSLKFKRNFFRKHYAN 203


>gi|331084861|ref|ZP_08333949.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410955|gb|EGG90377.1| hypothetical protein HMPREF0987_00252 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 244

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 20/222 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +    HI V +SGG DS+ LL ALH +       K + SAI+VD         E  ++
Sbjct: 18  QMIEEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KKFELSAITVDLGY------EEFHL 70

Query: 74  S---DVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                +C++L + + +V           + ++   +   + R   +++  K +    +  
Sbjct: 71  EPIEKLCAQLEVPYKIVRTDIAHILFEERKESNPCSLCAKMRKGALNDAVKDMGCNKVAY 130

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DD +ET+ +        +G   S    T L  ++L + RP +     D+  F  + 
Sbjct: 131 AHHKDDIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPMMFVDEMDVIGFKNKY 186

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           ++   +     D   +R   +  VR ++      K + F  +
Sbjct: 187 DLPVVKSKCPVDGHTKRQYAKELVRQLNQEHTGAKERMFTAI 228


>gi|256374465|ref|YP_003098125.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827]
 gi|255918768|gb|ACU34279.1| tRNA(Ile)-lysidine synthetase [Actinosynnema mirum DSM 43827]
          Length = 308

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/232 (24%), Positives = 86/232 (37%), Gaps = 23/232 (9%)

Query: 5   PIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           P+  VR  VR  +    PA + VAVSGG+DS        ++ +  +       A+ VDH 
Sbjct: 8   PLSRVRTAVRRFLAEHRPARVAVAVSGGADS-------LALAACTAALTSGARAVVVDHG 60

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           L+E + +     +  C+ L +   V   + +       AA            A      L
Sbjct: 61  LQEGSAEVAERAARTCAELGLDAQVRRVEVTGGGGPEAAA------RRARYAALRPERGL 114

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R    + +           +L+    RP L   R D     
Sbjct: 115 VLLGHTLDDQAETVLLGLGRGSGPRSIAGM-------RELDAPWGRPLLGVSRADTEGAC 167

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
            +  +S   DP N D  F RVR+RR V  +    L   + +           
Sbjct: 168 AELGLSPWSDPHNADPAFTRVRLRREVLPLLEEVLQGGVARALARTAAQLRE 219


>gi|167758161|ref|ZP_02430288.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704]
 gi|167664058|gb|EDS08188.1| hypothetical protein CLOSCI_00499 [Clostridium scindens ATCC 35704]
          Length = 263

 Score =  135 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 14/214 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             HI V +SGG DS+ LL ALH +       K + SA++VD      ++ +   V  +C 
Sbjct: 42  GDHIAVGISGGKDSLTLLYALHGLRRFYP-KKFELSAVTVDLG---YSECDFTPVVYLCE 97

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + + +V         + + ++   +   + R   +++  K +    +  AH  DD +
Sbjct: 98  ELGVPYKIVKTDIAHILFDERKESNPCSLCAKMRKGALNQAVKEMGCNKVAYAHHKDDII 157

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G   S    T L  ++L + RP +     ++  F  + ++      
Sbjct: 158 ETMLLSLI----FEGRFYSFSPKTYLDRMDLTVIRPIMFVDEAEVIGFKQKYDLPVVTSR 213

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              D   +R   +  V+ +D      + + F  +
Sbjct: 214 CPIDGYTKRQYAKELVKQLDDEHAGARQRMFTAI 247


>gi|225419721|ref|ZP_03762024.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme
           DSM 15981]
 gi|225041631|gb|EEG51877.1| hypothetical protein CLOSTASPAR_06059 [Clostridium asparagiforme
           DSM 15981]
          Length = 240

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 82/214 (38%), Gaps = 14/214 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              + + +SGG DS+ LL AL  +       +    AI+VD  L      E+  +  +C 
Sbjct: 23  GDRVALGMSGGKDSLTLLYALSHLQKFYP-KRFDLCAITVDLGL---GNLELDPIRALCE 78

Query: 79  RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              + + VV  +  K       ++   +   + R   ++  A       +  AH  DD +
Sbjct: 79  EFAVPYEVVPTQIGKVLFETRKESNPCSLCAKMRKGALNNKALEFGCNKVAYAHHRDDLI 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  M        +G   +    T L    L + RP L     ++  F  + ++  C++P
Sbjct: 139 ETALMSLI----YEGHFYAFSPRTKLDRTGLTVIRPLLYASEAEVVGFKNKYHLPVCKNP 194

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              D   +R  V+  +RD+      +K   F  +
Sbjct: 195 CPMDGHTKREYVKNLIRDLQRDNPTVKDCLFHAV 228


>gi|269836806|ref|YP_003319034.1| tRNA(Ile)-lysidine synthetase [Sphaerobacter thermophilus DSM
           20745]
 gi|269786069|gb|ACZ38212.1| tRNA(Ile)-lysidine synthetase [Sphaerobacter thermophilus DSM
           20745]
          Length = 468

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 112/306 (36%), Gaps = 21/306 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     +L+  SGG+DS+ L  +L ++ +     +    A+ V+H LR  A  +      
Sbjct: 22  LGPDDCVLIGFSGGADSLALTASLQAIHAAGRGPRP--LALHVNHRLRPEADADAERAVA 79

Query: 76  VCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +   + +  +VV           + G  +AAR ARYA ++  A+      +  AHT +DQ
Sbjct: 80  LGEAMGVPVTVVPVDVGAWDRVLREGTESAARAARYAALASAAREWGVRWVAVAHTANDQ 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLN--------LWISRPFLRCRREDIRSFLLQ 183
            ETV +R  R     G+            L+        LW+ RP L   R  +  ++  
Sbjct: 140 AETVLLRLARGAGLDGLAGMREQSHRPVPLDPDESEVVPLWLLRPLLGLTRAQVERYVRA 199

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI-------DLHALYLKMKKFQDLRVKVNNAVAM 236
           R +   ED SN    + R  VR  V           +  +        D    +  A   
Sbjct: 200 RGLVPIEDASNVSPVYRRNLVRHSVLPELERVAPGVIETIARTATLLADDAAYLQAAAEA 259

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
                +    R +    + + N+   L   +L ++A   G   + P    +E +      
Sbjct: 260 AGADIVGRAGRLVTVAREPLRNLHPALQRRVLILAAREAGVDPAGPTAERVEALRRAAVE 319

Query: 297 GKRGCV 302
           G  G V
Sbjct: 320 GAVGRV 325


>gi|182437879|ref|YP_001825598.1| hypothetical protein SGR_4086 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326778515|ref|ZP_08237780.1| tRNA(Ile)-lysidine synthase [Streptomyces cf. griseus XylebKG-1]
 gi|178466395|dbj|BAG20915.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326658848|gb|EGE43694.1| tRNA(Ile)-lysidine synthase [Streptomyces cf. griseus XylebKG-1]
          Length = 370

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 121/305 (39%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           ++   I+VDH L+  +      V    + + 
Sbjct: 71  VLVACSGGADSMALASALAFEARKL---DVRAGGITVDHNLQPGSGLRAAEVVTRLTAMD 127

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +        +   + G  AAAR+ARYA +   A+   A  ++  HT DDQ ETV +   R
Sbjct: 128 LDPVEAVAVHVGREGGPEAAARDARYAALDAAAERHGAAAVLLGHTRDDQAETVLLGLAR 187

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFL+  R+ +R   L +++   +DP N D  + R
Sbjct: 188 GSGIR--SLSGMAAASGPAGRYR--RPFLQLDRQAVRKACLVQSLPVWDDPHNIDPAYTR 243

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI----IAISQDIL 257
            R+R         AL   + +      +++   A  +  +      S+      +    L
Sbjct: 244 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAELSVRDETGRLECAKL 303

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314
            +    +   +   A I  G  +   +      +  L +G RG  +I   GRV   R+  
Sbjct: 304 YVLPPAVRRRVLRRALIEAGAPAGSLFARHLEEVDRLITGWRGQRAINLPGRVEAMRQGG 363

Query: 315 FLWIT 319
            L I 
Sbjct: 364 RLVIR 368


>gi|296166689|ref|ZP_06849114.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897954|gb|EFG77535.1| tRNA(Ile)-lysidine synthetase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 320

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 114/327 (34%), Gaps = 33/327 (10%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
            +V  F ++    A    VA+SGG DS+ L      +           +A+ VDH L+  
Sbjct: 12  AAVEEFAKTHAATAEQWCVALSGGPDSLALTAVAAQLRPT--------TAVIVDHGLQPG 63

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + D             +A   V+ +  +   G       A            +   ++  
Sbjct: 64  SGDVAETARAQA----VAVGCVAAQVVRVHVGNEGGPEAAARTARYAALSAYHGGPVLLG 119

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV +   R    +      +     YD      RP L  RR    +   +  
Sbjct: 120 HTLDDQAETVLLGLGRGSGVRS-----IAGMRPYDP--PWGRPLLGVRRALTHAACAELG 172

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKY 241
           ++  +DP NTD RF R R+R+ V  +    L       + +      +    +  L  + 
Sbjct: 173 LTAWQDPHNTDRRFTRTRLRQEVLPLLEEVLGGGVAEALARTATALREDTELIDTLAARA 232

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-GKRG 300
           L          +Q +  +   +   ++R    +  G  +    + +  V   + +   +G
Sbjct: 233 LPEAKAGAGLHTQALAALPGPVRRRVIR--GWLLAGGATGLTDKQIRGVDALVTAWRGQG 290

Query: 301 CVSIG------RVVIDRRANFLWITRA 321
            V++G      R++  RR   L + R 
Sbjct: 291 GVAVGSALRDERLIAGRRDGVLTLWRE 317


>gi|314965441|gb|EFT09540.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL082PA2]
 gi|315104911|gb|EFT76887.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA2]
 gi|327329235|gb|EGE70995.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL103PA1]
          Length = 311

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 25/322 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + +      D+ +R  +   V           G  AAAR AR A + + A       
Sbjct: 65  QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLDVA---GDEP 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +   +DP N D RF R RVR  +  +    L        ++   +  +  +L  + 
Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELIPVMEEVLGP------EVAASLARSATLLAGED 228

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299
             V   + +   +  +N +       + V  A  +    +       ++ V+  L     
Sbjct: 229 EVVARVARMWADEHGVNANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
             V +    ++ R   L++ R 
Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310


>gi|282853313|ref|ZP_06262650.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J139]
 gi|282582766|gb|EFB88146.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J139]
          Length = 317

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 25/322 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 17  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 70

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + +      D+ +R  +   V           G  AAAR AR A + + A       
Sbjct: 71  QQGSDEVAERTRDLLARRGMDACVRRVDVDAHDPDGPEAAARTARRAALLDVA---GDEP 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 128 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +   +DP N D RF R RVR  +  +    L        ++   +  +  +L  + 
Sbjct: 181 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGP------EVAASLARSATLLAGED 234

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299
             V   + +   +  +N +       + V  A  +    +       ++ V+  L     
Sbjct: 235 EVVARVARMWADEHGVNANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 294

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
             V +    ++ R   L++ R 
Sbjct: 295 AGVDVPGGRVEMRQGTLYLARR 316


>gi|16127457|ref|NP_422021.1| hypothetical protein CC_3227 [Caulobacter crescentus CB15]
 gi|221236270|ref|YP_002518707.1| PP-loop family cell cycle control ATPase [Caulobacter crescentus
           NA1000]
 gi|61216723|sp|Q9A3H7|TILS_CAUCR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|13424911|gb|AAK25189.1| hypothetical protein CC_3227 [Caulobacter crescentus CB15]
 gi|220965443|gb|ACL96799.1| PP-loop family cell cycle control ATPase [Caulobacter crescentus
           NA1000]
          Length = 408

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 89/402 (22%), Positives = 147/402 (36%), Gaps = 42/402 (10%)

Query: 6   IESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ VR  +   + PA    + V  SGG DS   L  L +VL           A+ VDH L
Sbjct: 3   LDQVRAALDRRLDPASRAPLAVGFSGGGDS---LFLLKTVLDWARPLDRPVLALVVDHQL 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +  +             L  A   ++W + KP+TGL AAAR AR+AL++  A+   A ++
Sbjct: 60  QPQSTAWTAEAVAKARALGAAALGLTWTDQKPRTGLPAAARRARHALLATAAREAGARVL 119

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  HT  D  E V MR++   +                  L++ RP L   R +IR  L 
Sbjct: 120 ILGHTASDLAEGVAMRAE-GSSVSNPRAWAPSPVWPEGRGLFVLRPLLTLTRAEIRDALT 178

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +   +W +DP+N D                         ++   R +   A+  L+P   
Sbjct: 179 REGETWLDDPANLDL------------------------RYARARARAAGALTPLLPVRE 214

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
           +             + +   ++   L  +     G    P    + R++  L+SG R   
Sbjct: 215 SPPPGVFEIDPAGAIRLPRDVVPAHLAAALLCASGAERPPRGDRLARLVERLRSGARFTA 274

Query: 303 SIGRVVIDRRANFLWITR-----AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQ 357
           ++    I+     L I R     A   L  L L P    VWDGR++      +L  +  +
Sbjct: 275 TLAGARIEADQAVL-ICRDAGEAARGGLARLDLAPGACGVWDGRWEVVAGKTALAVVALR 333

Query: 358 SYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399
               +     +P     R  +  P+     P+L         
Sbjct: 334 GRTSS-----LPAEQRARLSAIAPAVRPSLPVLLSLDGDAPG 370


>gi|315094257|gb|EFT66233.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL060PA1]
          Length = 311

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 116/322 (36%), Gaps = 25/322 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + +      D+ +R  +   V           G  AAAR AR A + + A       
Sbjct: 65  QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLDVA---GDEP 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +   +DP N D RF R RVR  +  +    L        ++   +  +  +L  + 
Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELIPVMGEVLGP------EVAASLARSATLLAGED 228

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299
             V   + +   +  +N +       + V  A  +    +       ++ V+  L     
Sbjct: 229 EVVARVARMWADEHGVNANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
             V +    ++ R   L++ R 
Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310


>gi|15645348|ref|NP_207522.1| hypothetical protein HP0728 [Helicobacter pylori 26695]
 gi|61216365|sp|O25428|TILS_HELPY RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|2313855|gb|AAD07779.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 336

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 73/192 (38%), Gaps = 18/192 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+  SGG DS  L   L           I F    VD+  ++   + +++   +
Sbjct: 11  LKEGKNLLGFSGGLDSTCLFFLLVG-------ENIVFDIALVDYNTQKQRLEIIQHAQKL 63

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
                    +      K        AR+ RY       K  +   ++ AH  +D+LE   
Sbjct: 64  AKTHHKKCYIHH--APKIAHNFEMQARKIRYDFFETLIKEHSYKHLILAHHLNDRLEWFL 121

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           M+       KG GL+ +     Y+      I RP L   ++ +++     ++ + ED SN
Sbjct: 122 MQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSN 174

Query: 195 TDDRFERVRVRR 206
           +  +F+R   R+
Sbjct: 175 SSLKFKRNCFRK 186


>gi|88854794|ref|ZP_01129460.1| hypothetical protein A20C1_08023 [marine actinobacterium PHSC20C1]
 gi|88815955|gb|EAR25811.1| hypothetical protein A20C1_08023 [marine actinobacterium PHSC20C1]
          Length = 340

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/323 (23%), Positives = 119/323 (36%), Gaps = 21/323 (6%)

Query: 8   SVRFFVRSLVYPAH----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +VR  + +L   +     +LVA+SGG DS   L    +   + S   ++  A+ V+H L+
Sbjct: 19  AVRTALAALPSSSGPEPLVLVALSGGPDS---LALAAATAFEASKAGMRAGAVIVNHNLQ 75

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           + + D     +     L +    +         G  +AAR+ARYA ++E A    A  ++
Sbjct: 76  DGSADVAAAAARQARDLGLDPVDIRSILVGDAGGPESAARDARYAALAEAAAEYGAIRVL 135

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             HT DDQ ETV +   R        L GM             RP L   RE        
Sbjct: 136 LGHTLDDQAETVLLGLARGSGAG--SLKGMAV-----DTGEYLRPLLAVARETTVQCCED 188

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             I    DP N D  + RVRVR+ V  +    L   ++             A  +  +  
Sbjct: 189 SGIVAWNDPHNLDTSYTRVRVRQTVLPLLESELGPGIRDALVRTADQAREDAEALDHFAE 248

Query: 244 VHMRSIIAISQD-------ILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
                +  IS+         L  +   L   L   A      +SL    ++E   L    
Sbjct: 249 EMAEDLAEISEAGISLPVRALAANPAALRQRLIRLAVASEFHVSLSRTHTLEIARLVTDW 308

Query: 297 GKRGCVSIGRVVIDRRANFLWIT 319
             +G + +  V + RR N L  +
Sbjct: 309 RGQGPIDVPGVRVVRRENLLHFS 331


>gi|155370502|ref|YP_001426036.1| hypothetical protein FR483_N404R [Paramecium bursaria Chlorella
           virus FR483]
 gi|155123822|gb|ABT15689.1| hypothetical protein FR483_N404R [Paramecium bursaria Chlorella
           virus FR483]
          Length = 513

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 100/270 (37%), Gaps = 30/270 (11%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             P  +++++SGGSDSM     +H +   +         + V++  R++A  E  +V+D 
Sbjct: 206 QRPTKLIMSISGGSDSMVAFHIIHGL---KEAFGYDIDVVMVNYTNRDSAYAEEAFVADW 262

Query: 77  CSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTINATLIMTAHTF 128
            +       V      K +               R+ RYA      KT+    ++  H  
Sbjct: 263 VNSFGYPLHVRRIDEIKRKQCANNQLRTVYEKYTRDVRYA----TYKTLGPHPVVMGHNK 318

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD LE +         +K   LSGM DT++    +   RP L   + DI ++  +  I +
Sbjct: 319 DDCLENILQNI--GSCQKYDNLSGM-DTLVVQDGIPFFRPLLDVSKNDIVAYAREHQIPF 375

Query: 189 CEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
             + +      +R ++R  V         + +  L+   K   D+   V  +V M +  +
Sbjct: 376 LPNSTP--PTMKRGQIRNKVAPVLNDWNELFVPGLFQLKKTMADMHKVVEKSVEMFVGNF 433

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
               +     + +  L +        L+  
Sbjct: 434 DANRVAC---VDKSFLTMGENFWKLSLKKL 460


>gi|258651090|ref|YP_003200246.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233]
 gi|258554315|gb|ACV77257.1| tRNA(Ile)-lysidine synthetase [Nakamurella multipartita DSM 44233]
          Length = 334

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 30/326 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +   ++ +      ++VA SGG+DS+ L + + +    R          +VDH L+  + 
Sbjct: 13  ACSAWLSAHAPGGPVVVACSGGADSLALTLGVLAAAGRR-----PVIGATVDHGLQPGSA 67

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL------ 121
           D     +++  RL    + V         GL AAAR ARY  ++  A+   A        
Sbjct: 68  DRAAGCAELMRRLGCVQTHVLTVTVTGDGGLEAAARRARYGALAALAQVAAAAGGAAGPA 127

Query: 122 -------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  ++  HT DDQ ETV +   R    +      +     +       RP L   R
Sbjct: 128 ASAVRVPVLLGHTADDQAETVLLGLARGSGPRS-----IAGMRPWRA--PWGRPLLALTR 180

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKV 230
               + + +  +    DP N D  F RVR+RR    +    L   ++    +  DL    
Sbjct: 181 AQTEAAVHEAGLIPWSDPHNADPAFTRVRLRREALPLLEDVLGGGVRDALVRTADLMADD 240

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMER 289
             A+  L    L         + + ++ + + L   +LR   A  G G ++      ++R
Sbjct: 241 LAALDDLAADALAGARSGDALLIEPLVPLPAALRRRVLRAWLAGAGAGPLTYDHLSRLDR 300

Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANF 315
            +       +  V  G  V  R    
Sbjct: 301 QLTARTGSAQVRVPGGLDVSRRDGAL 326


>gi|331083661|ref|ZP_08332772.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330403872|gb|EGG83424.1| tRNA(Ile)-lysidine synthetase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 179

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 15/165 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY 72
           + +   +H++V +SGG+DS+     L  +   +   + +  A+ V+H +R E A  +  +
Sbjct: 15  QMIPKNSHVIVGLSGGADSVC---LLKLLKEYKKQQEFQLYAVHVNHHIRGEEAVRDEEF 71

Query: 73  VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI---NATLIMTA 125
              VC +L +  +V  +       + +  L  A R  R     +  K I       I  A
Sbjct: 72  SKAVCKKLEVPFTVFHYDVPQIAKEEKLSLEEAGRNVRREAFEKAMKNIKVSGRKRIALA 131

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           H  +D  ETV     R     G+G     +T        +  PF+
Sbjct: 132 HHENDNAETVLHNLMRGSGAAGLG----GNTSCVRGEGLLYSPFV 172


>gi|111225920|ref|YP_716714.1| hypoxanthine phosphoribosyltransferase [Frankia alni ACN14a]
 gi|111153452|emb|CAJ65210.1| hypoxanthine phosphoribosyltransferase (partial match) [Frankia
           alni ACN14a]
          Length = 630

 Score =  134 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 19/222 (8%)

Query: 5   PIESVRFFVRS----LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            + +VRF VR+    L   A +LVA SGG DSM L  AL  V   R+   ++   + VDH
Sbjct: 39  AVAAVRFAVRNAVADLDPGALVLVACSGGPDSMSLAAALAFVAPRRA---LRAGLLVVDH 95

Query: 61  CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
                + +    V++    L +    V++    + +     A R+A    +   A  + A
Sbjct: 96  GWDPASAERAHGVAERGEALGLRPVEVLTAHAPRSEGAARDARRDA----LLAAAARLGA 151

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++  HT DDQ ETV +R  R    + +G     D +L    L + R       E  R+
Sbjct: 152 RAVLIGHTLDDQAETVLLRLARGSGARSLGGMRPRDGLLRRPLLGLRR-------EQTRA 204

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
             L   +   +DP+N D  F R RVR  V  +    L   + 
Sbjct: 205 ACLAERLPVWDDPTNEDPAFARARVRHRVLPLLEAELGPGIA 246


>gi|15611732|ref|NP_223383.1| hypothetical protein jhp0665 [Helicobacter pylori J99]
 gi|61216760|sp|Q9ZLB5|TILS_HELPJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|4155227|gb|AAD06249.1| putative [Helicobacter pylori J99]
          Length = 338

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 20/212 (9%)

Query: 8   SVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R F   L  +     L+  SGG DS  L   L           I F    VD+  ++ 
Sbjct: 2   TARDFKNYLEPLREGKNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYSTQKQ 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + +++   +         +      K        AR+ RY       K  +   ++ A
Sbjct: 55  RLEIIQHAQKLAQTHHKKCYIH--YAPKIARNFEMQARKVRYDFFETLIKEHSYKHLILA 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQ 183
           H  +D+LE   M+       KG GL+ +     Y+      I RP L   ++ +++    
Sbjct: 113 HHLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKD 167

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           +   + ED SN+  +F+R   R+   +  +  
Sbjct: 168 QK--FFEDDSNSSLKFKRNCFRKHYANALMQH 197


>gi|314922405|gb|EFS86236.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL001PA1]
          Length = 311

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 115/322 (35%), Gaps = 25/322 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + +      D+ +R  +   V           G  AAAR AR A + + A       
Sbjct: 65  QQGSDEVAERTRDLLARRGMDACVRRVDVDANDPDGPEAAARTARRAALLDVA---GDEP 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +   +DP N D RF R RVR  +  +    L        ++   +  +  +L  + 
Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELIPVMEEVLGP------EVAASLARSATLLAGED 228

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299
             V   + +   +  +N +       + V     +    +       ++ V+  L     
Sbjct: 229 EVVARVARMWADEHGVNANELPGLRGVEVGLVRRVVKEWLPQARMVHVDAVLGLLDGPGG 288

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
             V +    ++ R   L++ R 
Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310


>gi|239942229|ref|ZP_04694166.1| hypothetical protein SrosN15_14620 [Streptomyces roseosporus NRRL
           15998]
 gi|239988695|ref|ZP_04709359.1| hypothetical protein SrosN1_15407 [Streptomyces roseosporus NRRL
           11379]
          Length = 370

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 117/305 (38%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           ++   I+VDH L+  +      V    + + 
Sbjct: 71  VLVACSGGADSMALASALAFEARKL---DVRAGGITVDHNLQPGSGLRAAEVVTRLTAMD 127

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +        +   + G  AAAR+ARYA +   A+   A  ++  HT DDQ ETV +   R
Sbjct: 128 LDPVEAVAVHVGREGGPEAAARDARYAALDAAAERHGAAAVLLGHTRDDQAETVLLGLAR 187

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFL+  R+  R   L ++I   +DP N D  + R
Sbjct: 188 GSGIR--SLSGMAAASGPAGRYR--RPFLQLDRQTARKACLVQSIPVWDDPHNIDPAYTR 243

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM----RSIIAISQDIL 257
            R+R         AL   + +      +++   A  +  +              +    L
Sbjct: 244 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAELTVRDETGRLECAGL 303

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314
                 +   +   A I  G  +   +      +  L +G RG  +I   GRV   R+  
Sbjct: 304 YALPPAVRRRVLRRALIEAGAPAGSLFARHLEEVDRLITGWRGQRAINLPGRVEALRQGG 363

Query: 315 FLWIT 319
            L I 
Sbjct: 364 RLVIR 368


>gi|207093285|ref|ZP_03241072.1| hypothetical protein HpylHP_11036 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 215

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 18/193 (9%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
             SGG DS+ L   L           I F    VD+  ++   + +++   +        
Sbjct: 2   GFSGGVDSVCLFYLLVG-------ENIAFDIALVDYNTQKQRLEIIQHAQTLAKTHHKKC 54

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            +      K        AR+ RY       K  +   ++ AH  +D+LE   M+      
Sbjct: 55  YIH--YAPKIMHNFEMQARKIRYDFFETLTKEHSYKHLILAHHLNDRLEWFLMQLS---- 108

Query: 145 EKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            KG GL+ +     Y+      I RP L   ++ +++     ++ + ED SN+  +F+R 
Sbjct: 109 -KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFKRN 165

Query: 203 RVRRFVRDIDLHA 215
             R+   +  +  
Sbjct: 166 FFRKNYANSLMQH 178


>gi|291445684|ref|ZP_06585074.1| tRNA(Ile)-lysidine synthase [Streptomyces roseosporus NRRL 15998]
 gi|291348631|gb|EFE75535.1| tRNA(Ile)-lysidine synthase [Streptomyces roseosporus NRRL 15998]
          Length = 391

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/305 (24%), Positives = 117/305 (38%), Gaps = 14/305 (4%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           ++   I+VDH L+  +      V    + + 
Sbjct: 92  VLVACSGGADSMALASALAFEARKL---DVRAGGITVDHNLQPGSGLRAAEVVTRLTAMD 148

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +        +   + G  AAAR+ARYA +   A+   A  ++  HT DDQ ETV +   R
Sbjct: 149 LDPVEAVAVHVGREGGPEAAARDARYAALDAAAERHGAAAVLLGHTRDDQAETVLLGLAR 208

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   LSGM             RPFL+  R+  R   L ++I   +DP N D  + R
Sbjct: 209 GSGIR--SLSGMAAASGPAGRYR--RPFLQLDRQTARKACLVQSIPVWDDPHNIDPAYTR 264

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM----RSIIAISQDIL 257
            R+R         AL   + +      +++   A  +  +              +    L
Sbjct: 265 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDTWAAEAELTVRDETGRLECAGL 324

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI---GRVVIDRRAN 314
                 +   +   A I  G  +   +      +  L +G RG  +I   GRV   R+  
Sbjct: 325 YALPPAVRRRVLRRALIEAGAPAGSLFARHLEEVDRLITGWRGQRAINLPGRVEALRQGG 384

Query: 315 FLWIT 319
            L I 
Sbjct: 385 RLVIR 389


>gi|33592954|ref|NP_880598.1| hypothetical protein BP1912 [Bordetella pertussis Tohama I]
 gi|61216607|sp|Q7VX92|TILS_BORPE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|33572602|emb|CAE42194.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382366|gb|AEE67213.1| hypothetical protein BPTD_1884 [Bordetella pertussis CS]
          Length = 321

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 103/323 (31%), Gaps = 34/323 (10%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             PA + VAVSGG+DS      L    +             V H L+  A      V  +
Sbjct: 10  PAPARLAVAVSGGADS----AMLAVAAAAALPPGCTLRLFHVHHGLQAAADQWAAQVRGL 65

Query: 77  CSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            + L +            Q  G+ AAAR ARY  ++  A+      I+ AH  +DQ ETV
Sbjct: 66  GALLGVPVDEARVTVPPGQGLGMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETV 125

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL----LQRNISWCED 191
            +R  R    +GM              +   RP+L      I +       Q      +D
Sbjct: 126 LLRLLRGTGLQGMAAM---APFSERDGVAYLRPWLDVDHAAILALAGAVRAQCGWQAVQD 182

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           P+NTD R+ R  VR  +      AL  +   +Q +  +    +A        V       
Sbjct: 183 PTNTDPRYARAAVRTQLAP----ALDARWPGWQAIVARHARQMAEAAEIVAEVAQADFAT 238

Query: 252 ISQ----------DILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS----- 296
           +                + +      LR   A       +P    +  +   L+      
Sbjct: 239 LEPADAGRSFSLAAWRGLSAARQAQALRHWLA--SQDAPMPTEARLAELQRQLRQLHALG 296

Query: 297 -GKRGCVSIGRVVIDRRANFLWI 318
             +         V+      +WI
Sbjct: 297 HDRHLRWQHAGRVVRCERGRVWI 319


>gi|208434638|ref|YP_002266304.1| hypothetical protein HPG27_683 [Helicobacter pylori G27]
 gi|208432567|gb|ACI27438.1| hypothetical protein HPG27_683 [Helicobacter pylori G27]
          Length = 338

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/202 (21%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 3   ARDFKNYLEPLREGKNLLGFSGGLDSTCLFYLLVG-------ENIAFDIALVDYNTQKQR 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              +++   +         +      K        AR+ RY       K  +   ++ AH
Sbjct: 56  LKIIQHAQKLAKTHHKKCYIH--YAPKIARNFEMQARKIRYDFFETLTKEHSYKHLILAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+      I RP L   ++ +++    +
Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDQ 168

Query: 185 NISWCEDPSNTDDRFERVRVRR 206
              + ED SN+  +F+R   R+
Sbjct: 169 K--FFEDNSNSSLKFKRNFFRK 188


>gi|155122075|gb|ABT13943.1| hypothetical protein MT325_M389R [Paramecium bursaria chlorella
           virus MT325]
          Length = 499

 Score =  133 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 30/270 (11%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             P  +++++SGGSDSM     +H +   +         + V++  R +A  E  +V+D 
Sbjct: 192 QRPTKLIMSISGGSDSMVAFHIIHGL---KEAFGYDIDVVMVNYTNRNSAYAEEAFVADW 248

Query: 77  CSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTINATLIMTAHTF 128
            +       V      K +               R+ RYA      KT+    ++  H  
Sbjct: 249 VNSFGYPLHVRRIDEIKRKQCADNQLRTVYEKYTRDVRYA----TYKTLGPHPVVMGHNK 304

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD LE +         +K   LSGM DT++    +   RP L   + DI ++  +  I +
Sbjct: 305 DDCLENILQNI--GSCQKYDNLSGM-DTLVVQDGIPFFRPLLDVSKNDIVAYAREHQIPF 361

Query: 189 CEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
             + +      +R ++R  V         + +  L+   K   D+   V  +V M +  +
Sbjct: 362 LPNSTP--PTMKRGQIRNKVAPVLNDWNELFVPGLFQLKKTMADMHKVVEKSVEMFVGNF 419

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
               +     + +  L +        L+  
Sbjct: 420 DANRVAC---VDKSFLTMGENFWKLSLKKL 446


>gi|317014141|gb|ADU81577.1| tRNA(Ile)-lysidine synthase [Helicobacter pylori Gambia94/24]
          Length = 338

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 3   ARDFKNYLEPLREGQNLLGFSGGLDSTCLFHLLVG-------ENIAFDIALVDYNTQKQR 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K        AR+ RY       K  +   ++ AH
Sbjct: 56  LEIIQHAQKLAQTHHKKCYIH--YAPKIARNFEMQARKIRYDFFETLIKEHSYKHLILAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+      I RP L   ++ +++    +
Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDQ 168

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
              + ED SN+  +F+R   R+   +  +  
Sbjct: 169 K--FFEDDSNSSLKFKRNCFRKNYANALMQH 197


>gi|144897902|emb|CAM74766.1| cell cycle protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 167

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 5/152 (3%)

Query: 3   LSPIESVRFFVRSLVYPAH--ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           LSP E      R   +     + VAVSGG+DS+   +     + +R        A++VDH
Sbjct: 4   LSPAEFASLMDRLGPFEPRPRLAVAVSGGADSLAATLLAAHWVHERRG---TLVALTVDH 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            LR  +  E   V    +   I H ++ W   KP + +   AR ARY L+ ++ +     
Sbjct: 61  RLRPNSTAEAVLVGQWLANHGIEHHILPWLGDKPVSDIQGRARAARYGLLEQYCRQAGIL 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG 152
            ++ AH  DDQ ET  +R  R     G+   G
Sbjct: 121 HLLLAHHRDDQAETFLLRLARGSGVDGLLAHG 152


>gi|313835713|gb|EFS73427.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA2]
 gi|314928385|gb|EFS92216.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL044PA1]
 gi|314970191|gb|EFT14289.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA3]
          Length = 317

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 116/324 (35%), Gaps = 29/324 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SRWASRRCRSDVR--VVIVDHRL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + D       + +   +   V           G  AAAR AR A + + A       
Sbjct: 65  QQGSDDVAERTRQLLASRGMDARVRRVDVDAEDPDGPEAAARTARRAALLDVA---GDEP 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 122 VLLGHTLDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEIRRAQTVQAC 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL----KMKKFQDLRVKVNNAVAML 237
            +  +   +DP N D RF R RVR  +  +    L       + +   L    +  VA  
Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMAEVLGPGVAESLARSAALLAGEDQVVARA 234

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
              +   H  S   +S  +  +++ L   +++                 ++ V+  L+  
Sbjct: 235 ARVWADEHGVSSDELS-GLCGVEAGLARRVVKEWL-------PEARMVHVDSVLGLLEGP 286

Query: 298 KRGCVSIGRVVIDRRANFLWITRA 321
               V +    ++ R   L++TR 
Sbjct: 287 GGAGVDVPGGRVEVRRGTLYLTRR 310


>gi|162455575|ref|YP_001617942.1| hypothetical protein sce7293 [Sorangium cellulosum 'So ce 56']
 gi|161166157|emb|CAN97462.1| hypothetical protein sce7293 [Sorangium cellulosum 'So ce 56']
          Length = 321

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 104/243 (42%), Gaps = 18/243 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +   E +    R L     +L A SGG DS  LL  L  +         +  A  VDH 
Sbjct: 1   MIRLAERLIRDERLLARGDVVLCACSGGPDSTALLHVLSLLRRRIGH---EVVAHGVDHG 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           LR  A  E+    D+  +L + ++      + P   L A AR AR+A ++  A    A  
Sbjct: 58  LRAAAAAELAIARDLSEQLGVPYAETRVDVA-PGANLQARARAARFAALAAAAAAHGARA 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--------------NLWISR 167
           I T HT DD+ ETV +R  R    +G+ +      +   +              ++ + R
Sbjct: 117 IATGHTADDRAETVLLRLLRGAGPRGLAVLPPRAPLPSGVAGAACGGVEPGSAASIELIR 176

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P L+ RR D+ + L +  +++ EDPSN D RF RVRVRR +  +        ++    L 
Sbjct: 177 PLLQARRADVLAHLGRHRLAFAEDPSNRDPRFTRVRVRRELLPLLEDLSPAIVEHLCALS 236

Query: 228 VKV 230
             +
Sbjct: 237 DML 239


>gi|108796857|ref|YP_636406.1| hypothetical chloroplast RF62 [Staurastrum punctulatum]
 gi|122211798|sp|Q32RX0|TILS_STAPU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|61393625|gb|AAX45766.1| hypothetical chloroplast RF62 [Staurastrum punctulatum]
          Length = 493

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/223 (23%), Positives = 78/223 (34%), Gaps = 48/223 (21%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     IL+AVSGG DS+ LL  L  +    S+   K   I  DH     +K +  +V+ 
Sbjct: 57  LQPKQRILIAVSGGQDSICLLRILFDLQRKWSW---KLGIIHCDHRWNSRSKIQAEHVAC 113

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +   L+I +       S  +  +   AR  RY +I   A + N T I+T H   D++ET+
Sbjct: 114 LAINLQINYHEGIAIESVQKESI---ARLWRYNVIQSVAISNNYTAIITGHNASDRIETL 170

Query: 136 YMRSQRDYAEKGMGLSGMCDTILY------------------------------------ 159
                R     G+        + +                                    
Sbjct: 171 LYNLMRGSGLHGLQSIKWKRNLCFSHFTRSVLSKIKFSFLVKKLKFIKTFMDHEDFQGNH 230

Query: 160 ------DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                    L + RPFL   R +IR+ L   N     D SN +
Sbjct: 231 FFFLKKRKQLHLIRPFLETTRTEIRNILTIWNFPSWPDVSNKE 273


>gi|315082137|gb|EFT54113.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL078PA1]
          Length = 311

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 111/320 (34%), Gaps = 21/320 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + +      D+  R  +   V           G  AAAR AR A + + A       
Sbjct: 65  QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLDVA---GDEP 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +   +DP N D RF R RVR  +  +    L  ++         +      ++ + 
Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGPEVAASLARSATLLAGEDEIVARV 234

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
             +        + ++  +    +    RV        +       ++ V+  L       
Sbjct: 235 ARMWADEHGVKANELPGLRGVEVGLARRVVKEW----LPQARMVHVDAVLGLLDGPGGAG 290

Query: 302 VSIGRVVIDRRANFLWITRA 321
           V +    ++ R   L++ R 
Sbjct: 291 VDVPGGRVEMRQGTLYLARR 310


>gi|307637409|gb|ADN79859.1| tRNA Ile-lysidine synthetase [Helicobacter pylori 908]
 gi|325996000|gb|ADZ51405.1| tRNA Ile -lysidine synthetase [Helicobacter pylori 2018]
 gi|325997595|gb|ADZ49803.1| tRNA Ile-lysidine synthase [Helicobacter pylori 2017]
          Length = 338

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 20/211 (9%)

Query: 9   VRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            R F   L  +     L+  SGG DS  L   L           I F    VD+  ++  
Sbjct: 3   ARDFKNYLEPLREGQNLLGFSGGLDSTCLFFLLVG-------ENIAFDIALVDYNTQKQR 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +++   +         +      K        AR+ RY       +  +   ++ AH
Sbjct: 56  LEIIQHAQKLAQTHHKKCYIH--YAPKIARNFEMQARKIRYDFFEALMREHSYKHLILAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQR 184
             +D+LE   M+       KG GL+ +     Y+      I RP L   ++ +++    +
Sbjct: 114 HLNDRLEWFLMQLS-----KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAKDQ 168

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
              + ED SN+  +F+R   R+   +  +  
Sbjct: 169 K--FFEDDSNSSLKFKRNCFRKNYANALMQH 197


>gi|145344203|ref|XP_001416626.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576852|gb|ABO94919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 714

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 16/233 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R   +   I V++SGG DSM L   L                + +D+  R  + +E  +V
Sbjct: 248 RMSEFGNSIAVSLSGGVDSMVLAYILK-------HQGYDVVTLHIDYKNRPESTEEADFV 300

Query: 74  SDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            D   R  +     +    +    P+      +R  RY    E         ++  H   
Sbjct: 301 DDWSLRHGMKFERCTVDQIRRGVTPREQYEIESRRIRYGFYKEAGAKHGFPAVLLGHHHG 360

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  E +     R      + ++GM D  + +  + I RP L   ++D+ +F     I + 
Sbjct: 361 DVQENIITNLMRGANL--LSVNGMSDEGVVE-GVRIWRPMLSHVKDDVLTFAHAYGIPYF 417

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
            D + T     R ++R  +  +      + + +   +  + +  ++ ++ K L
Sbjct: 418 LDSTPTWS--TRGKLRNQLVPLLEDMFGIGLLRNLSVIGENSEQLSEMVDKSL 468


>gi|303314295|ref|XP_003067156.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240106824|gb|EER25011.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|320037424|gb|EFW19361.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 815

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 6/157 (3%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +    P +I +AVSGG DSM L      ++ +     +   A  VDH  RE + DE   V
Sbjct: 35  KENALPRNIALAVSGGPDSMALAHLCRRLIVEGHIPDLNVKAFIVDHKAREKSTDEALKV 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHT 127
           +     + +   V++ +  +              AR  RY  +     T N   +   H 
Sbjct: 95  AGWIKSMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHH 154

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            DD +ET  +R  + +   G+        I    +LW
Sbjct: 155 RDDNVETALLRLAQGHGRFGLAGFDSVSPIPECHSLW 191



 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 3/100 (3%)

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA--LY 217
             ++I RPF    +  + +      + +  DP+N D     R  VR+ +   DL      
Sbjct: 242 GGVYIFRPFRSFPKARLEATCRVARVPFVIDPTNEDHTLTIRNTVRKLLSSGDLPRALQS 301

Query: 218 LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
             +  F     +    +  L   +L +   +    S   L
Sbjct: 302 PSILAFISKNQRAKERLQDLTDSFLKLVRVNNFDFSSGTL 341


>gi|50841748|ref|YP_054975.1| hypothetical protein PPA0258 [Propionibacterium acnes KPA171202]
 gi|61216489|sp|Q6AB49|TILS_PROAC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|50839350|gb|AAT82017.1| conserved protein [Propionibacterium acnes KPA171202]
 gi|313765283|gb|EFS36647.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL013PA1]
 gi|313793177|gb|EFS41244.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA1]
 gi|313802735|gb|EFS43953.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL110PA2]
 gi|313806392|gb|EFS44899.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA2]
 gi|313810942|gb|EFS48656.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL083PA1]
 gi|313814560|gb|EFS52274.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL025PA1]
 gi|313815348|gb|EFS53062.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL059PA1]
 gi|313817471|gb|EFS55185.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL046PA2]
 gi|313821993|gb|EFS59707.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA1]
 gi|313824111|gb|EFS61825.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA2]
 gi|313826478|gb|EFS64192.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL063PA1]
 gi|313828787|gb|EFS66501.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL063PA2]
 gi|313831707|gb|EFS69421.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL007PA1]
 gi|313834411|gb|EFS72125.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL056PA1]
 gi|313840398|gb|EFS78112.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL086PA1]
 gi|314916064|gb|EFS79895.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA4]
 gi|314917215|gb|EFS81046.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA1]
 gi|314921715|gb|EFS85546.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL050PA3]
 gi|314926568|gb|EFS90399.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL036PA3]
 gi|314931078|gb|EFS94909.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL067PA1]
 gi|314955053|gb|EFS99459.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL027PA1]
 gi|314959092|gb|EFT03194.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA1]
 gi|314961366|gb|EFT05467.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA2]
 gi|314964589|gb|EFT08689.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL082PA1]
 gi|314969688|gb|EFT13786.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL037PA1]
 gi|314974753|gb|EFT18848.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL053PA1]
 gi|314977049|gb|EFT21144.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL045PA1]
 gi|314980291|gb|EFT24385.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL072PA2]
 gi|314985465|gb|EFT29557.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA1]
 gi|314987375|gb|EFT31466.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA2]
 gi|314989084|gb|EFT33175.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL005PA3]
 gi|315078394|gb|EFT50425.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL053PA2]
 gi|315082718|gb|EFT54694.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL027PA2]
 gi|315086077|gb|EFT58053.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL002PA3]
 gi|315087663|gb|EFT59639.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL072PA1]
 gi|315097300|gb|EFT69276.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL038PA1]
 gi|315099488|gb|EFT71464.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL059PA2]
 gi|315102006|gb|EFT73982.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL046PA1]
 gi|315106294|gb|EFT78270.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL030PA1]
 gi|315110072|gb|EFT82048.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL030PA2]
 gi|327331330|gb|EGE73069.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL096PA2]
 gi|327333316|gb|EGE75036.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL096PA3]
 gi|327334836|gb|EGE76547.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL097PA1]
 gi|327445206|gb|EGE91860.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL013PA2]
 gi|327447289|gb|EGE93943.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL043PA1]
 gi|327450264|gb|EGE96918.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL043PA2]
 gi|327454530|gb|EGF01185.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA3]
 gi|327456600|gb|EGF03255.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL083PA2]
 gi|327457124|gb|EGF03779.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL092PA1]
 gi|328755584|gb|EGF69200.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL087PA1]
 gi|328756910|gb|EGF70526.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL025PA2]
 gi|328758406|gb|EGF72022.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL020PA1]
 gi|328761143|gb|EGF74687.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes HL099PA1]
 gi|332674666|gb|AEE71482.1| tRNA(Ile)-lysidine synthase [Propionibacterium acnes 266]
          Length = 311

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 114/322 (35%), Gaps = 25/322 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + +      D+  R  +   V           G  AAAR AR A + + A       
Sbjct: 65  QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLDVA---GDEP 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +   +DP N D RF R RVR  +  +    L        ++   +  +  +L  + 
Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGP------EVAASLARSATLLAGED 228

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299
             V   + +   +  +  +       + V  A  +    +       ++ V+  L     
Sbjct: 229 EVVARVARMWADEHGVKANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
             V +    ++ R   L++ R 
Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310


>gi|255505459|ref|ZP_05346248.3| PP-loop family protein [Bryantella formatexigens DSM 14469]
 gi|255267760|gb|EET60965.1| PP-loop family protein [Bryantella formatexigens DSM 14469]
          Length = 268

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 85/219 (38%), Gaps = 14/219 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +     I V +SGG DS+ LL AL  +         +  A++VD             +
Sbjct: 10  QMIEEGDRIAVGISGGKDSLTLLYALQGLRRFYP-KHFELEAVTVDLG-HPGFDTTA--I 65

Query: 74  SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             +C  L + ++VV  +        + ++   +   + R   +++  K      +  AH 
Sbjct: 66  EALCHELEVPYTVVKTEIAAIVFEQRKESNPCSLCAKMRKGALNDVVKGHGCNKVAYAHH 125

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET+ +        +G   S    T L  ++L + RP +     D+  F  + ++ 
Sbjct: 126 KDDIIETMLLSLI----FEGRFHSFSPRTYLDRMDLTVIRPLMFVSEADVIGFQNKYHLP 181

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             +     D   +R   +  +R ++L    +K + F  +
Sbjct: 182 VAKSRCPADGYTKREYAKNLLRQLNLDFPGVKERMFSAI 220


>gi|154508551|ref|ZP_02044193.1| hypothetical protein ACTODO_01052 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798185|gb|EDN80605.1| hypothetical protein ACTODO_01052 [Actinomyces odontolyticus ATCC
           17982]
          Length = 369

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 84/192 (43%), Gaps = 7/192 (3%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+   S+  F+     P  ++V +SGG+DS+ L +    V +      I    ++VDH L
Sbjct: 22  LAVRASLTSFIDEAGAPPALVVGLSGGADSLALALTTIDVAAR---AGIPVVTVTVDHGL 78

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           R  + +E R V+D    L     V +     P  G   +AR+AR A +   A+   A  I
Sbjct: 79  RAGSGEEARRVADRAESLGARAVVETVSVEGPG-GPEGSARDARRAALRAVAQREGAP-I 136

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  HT DDQ ETV +R  R        L  +      D  +   RP L  RR D      
Sbjct: 137 LLGHTMDDQAETVLLRLARGSGP--SSLRAIAPVSRDDDGVTWLRPLLGLRRTDTEQACA 194

Query: 183 QRNISWCEDPSN 194
           Q  ++  +DP+N
Sbjct: 195 QAGLTPIQDPTN 206


>gi|225378080|ref|ZP_03755301.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM
           16841]
 gi|225210081|gb|EEG92435.1| hypothetical protein ROSEINA2194_03740 [Roseburia inulinivorans DSM
           16841]
          Length = 248

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 16/220 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRY 72
           + +     I V +SGG DS+ LL A+ ++   R + KI    AI+VD         ++  
Sbjct: 18  QMIQEGDKIAVGISGGKDSLTLLYAMANLR--RFYPKIFSLIAITVDLG---YEGFDLTP 72

Query: 73  VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           V  +C  L++ + +VS +      N K +    +   + R   +++  K +    +  AH
Sbjct: 73  VKLLCEHLQVEYHIVSTEITKIIFNDKNEASPCSLCAKLRKGALNQKIKELGCNKVAYAH 132

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD +ET+ +        +G   S    T L  + L + RP +     +++ F  + N+
Sbjct: 133 HMDDMIETMVLSMI----FEGRFYSFSPVTFLDRMELTVIRPMMYVSEAEVKGFRNKYNL 188

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              E+P   D   +R   +  VR I+L     K + F  +
Sbjct: 189 PVVENPCPVDGVTKRQYAKDLVRQINLDHPGAKKRMFTAI 228


>gi|217033054|ref|ZP_03438522.1| hypothetical protein HPB128_5g7 [Helicobacter pylori B128]
 gi|216945226|gb|EEC23909.1| hypothetical protein HPB128_5g7 [Helicobacter pylori B128]
          Length = 319

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 69/184 (37%), Gaps = 18/184 (9%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
             SGG DS+ L   L           I F    VD+  ++   + +++   +        
Sbjct: 2   GFSGGLDSVCLFHLLVG-------ENIAFDIALVDYNTQKQRLEIIQHAQTLAKTHHKKC 54

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            +      K        AR+ RY       K  +   ++ AH  +D+LE   M+      
Sbjct: 55  HIH--YAPKIARNFEMQARKIRYDFFEALTKEHSYKHLILAHHLNDRLEWFLMQLS---- 108

Query: 145 EKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            KG GL+ +     Y+      I RP L   ++ +++        + ED SN+  +F+R 
Sbjct: 109 -KGAGLNTLLGFQAYEKRESYAIVRPLLYTPKDTLKTLAKDHK--FFEDDSNSSLKFKRN 165

Query: 203 RVRR 206
             R+
Sbjct: 166 FFRK 169


>gi|262196733|ref|YP_003267942.1| tRNA(Ile)-lysidine synthetase [Haliangium ochraceum DSM 14365]
 gi|262080080|gb|ACY16049.1| tRNA(Ile)-lysidine synthetase [Haliangium ochraceum DSM 14365]
          Length = 427

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 109/315 (34%), Gaps = 16/315 (5%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +L     I VA SGG DS  L  A   + S         + + VDH LR  +  +   
Sbjct: 14  AHALGPEDAIGVACSGGPDSSALAHACLRLASAERARIGPVTLLHVDHGLRPDSGADAAA 73

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V  +      A  VV  +  + +  L AAAR+AR+A +   A+ +    ++ AHT  DQ 
Sbjct: 74  VYALAEPFGAAVHVVRAEVDRDRASLEAAARDARFAALDALAEQLGLRFVLLAHTASDQA 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ETV MR  R     G+                  RP L   R DI ++  +  +    DP
Sbjct: 134 ETVLMRVLRGTGVFGLAAMQ-------PRRGRYLRPLLGLERGDIEAYCARAGVVALADP 186

Query: 193 SNTDDRFERVR--------VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            N D  F RVR        +R         AL    +     R  ++ A   L+ +    
Sbjct: 187 MNRDPAFLRVRVRRRWLPALREE-NPRIDRALCRLAESAAQQREVLSYAAERLLAEARAS 245

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSI 304
                      +    + +    L       G       + +    +L   +     +S+
Sbjct: 246 DADEPAYRVAALRQAPAAVRARALAEMCTRVGAPPPEAVHLAAIDALLAASAAGSRRLSL 305

Query: 305 GRVVIDRRANFLWIT 319
                +R  + L++ 
Sbjct: 306 PGAEAERAYDRLYVR 320


>gi|160892659|ref|ZP_02073449.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50]
 gi|156865700|gb|EDO59131.1| hypothetical protein CLOL250_00189 [Clostridium sp. L2-50]
          Length = 251

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 78/216 (36%), Gaps = 14/216 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DS+ LL AL  +       K    AI+V+         +   +  +C 
Sbjct: 23  GDKIAVGISGGKDSLTLLYALAELRRFYP-KKFDLIAITVNLGF---DNFDTAKIEQLCK 78

Query: 79  RLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + + +V  +      N + +    +   + R   +++    +    I  AH  DD +
Sbjct: 79  ELDVPYYIVDTEIYDIVFNVRKEKNPCSLCAKMRKGALNQKLNDLGCNKIAYAHHKDDFI 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  M        +G   +    T L    L + RP +     +I SF     +   + P
Sbjct: 139 ETFLMSLL----YEGRIHTFSPKTYLDKSELMVIRPLMYINEGEIISFKNDMQLPVIKSP 194

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
              D   +R   ++ +  ++      K + F  +  
Sbjct: 195 CPADGYTKREYAKQTLAKLEKETPGCKQRIFSAIER 230


>gi|207108515|ref|ZP_03242677.1| hypothetical protein HpylH_02927 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 314

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 18/193 (9%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
             SGG DS+ L   L           I F    VD+  ++   + +++   +        
Sbjct: 2   GFSGGVDSVCLFYLLVG-------ENIAFDIALVDYNTQKQRLEIIQHAQTLAKTHHKKC 54

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
            +      K        AR+ RY       K  +   ++ AH  +D+LE   M+      
Sbjct: 55  YIH--YAPKIMHNFEMQARKIRYDFFETLTKEHSYKHLILAHHLNDRLEWFLMQLS---- 108

Query: 145 EKGMGLSGMCDTILYDLN--LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            KG GL+ +     Y+      I RP L   ++ +++     ++ + ED SN+  +F+R 
Sbjct: 109 -KGAGLNTLLSFQAYEKRESYAIVRPLLYTPKDTLKTLAK--DLKFFEDDSNSSLKFKRN 165

Query: 203 RVRRFVRDIDLHA 215
             R+   +  +  
Sbjct: 166 FFRKNYANSLMQH 178


>gi|254574078|ref|XP_002494148.1| hypothetical protein [Pichia pastoris GS115]
 gi|238033947|emb|CAY71969.1| Hypothetical protein PAS_chr4_0708 [Pichia pastoris GS115]
          Length = 483

 Score =  131 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 21/183 (11%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           V+ F   L  P  + +++SGG DSM L   L     + + G ++  A++V+H  R+ ++ 
Sbjct: 14  VKIFPHGL--PRRVGISLSGGVDSMALTSLLSRYRDEYNVG-VEIVALTVNHEYRKGSRQ 70

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLI 122
           E   V  + + L + H ++  K +               AR  RY  I ++    +   +
Sbjct: 71  EAEEVGKLVAPLNVQHKIIDLKWNLDSVELHQLGNFERLARTKRYQHIQKYCYDYDIQHL 130

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD----------LNLWISRPFLRC 172
              H  +DQ+ET  +R +++      G+  M D   Y             + I RP L  
Sbjct: 131 FLGHQLEDQVETFLLRLKQNSTI--FGMRCMKDISSYPSLPLYPSSVKPPIKIVRPMLNI 188

Query: 173 RRE 175
           +++
Sbjct: 189 KKK 191


>gi|289424614|ref|ZP_06426397.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK187]
 gi|289428939|ref|ZP_06430619.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J165]
 gi|295129827|ref|YP_003580490.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK137]
 gi|289155311|gb|EFD03993.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK187]
 gi|289157940|gb|EFD06163.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes J165]
 gi|291376956|gb|ADE00811.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes SK137]
          Length = 317

 Score =  131 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 114/322 (35%), Gaps = 25/322 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 17  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 70

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + +      D+  R  +   V           G  AAAR AR A + + A       
Sbjct: 71  QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTARRAALLDVA---GDEP 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 128 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 180

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +   +DP N D RF R RVR  +  +    L        ++   +  +  +L  + 
Sbjct: 181 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVLGP------EVAASLARSATLLAGED 234

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299
             V   + +   +  +  +       + V  A  +    +       ++ V+  L     
Sbjct: 235 EVVARVARMWADEHGVKANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 294

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
             V +    ++ R   L++ R 
Sbjct: 295 AGVDVPGGRVEMRQGTLYLARR 316


>gi|52353974|ref|NP_048910.2| hypothetical protein PBCV1_A554/556/557L [Paramecium bursaria
           Chlorella virus 1]
 gi|34482010|dbj|BAC84999.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
 gi|52221432|gb|AAC96914.2| similar to MesJ cell cycle protein [Chlorobium tepidum],
           corresponds to accession number AAG12421 [Paramecium
           bursaria Chlorella virus 1]
          Length = 498

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/252 (21%), Positives = 95/252 (37%), Gaps = 27/252 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +R  V P  I +++SGG DSM L   L  +   R F   K +   V++  R  
Sbjct: 185 VKAVEKALRD-VKPGEITMSLSGGVDSMTLFHILDGL---RGFYGYKMNVAMVNYTNRAC 240

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTI 117
           A DE  +V+D  + L    SV   +    +  +            R+ RY      +   
Sbjct: 241 AYDEEYFVTDWANWLGYPISVRRIEEINRKPCIDADIRTLYETYTRKVRYNTYKTIS--- 297

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +   +   H  DD LE +          K   L+GM DT++    +   RP L   ++DI
Sbjct: 298 HGAFVAMGHNKDDCLENILQNIC--SGHKYDNLNGM-DTVVVQDGIKFFRPLLGVSKDDI 354

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKV 230
             +    NI +  + +     F+R  VR  V           +  L+       ++ + +
Sbjct: 355 IEYARGHNIPYLPNSTPA--HFKRGMVRNSVVPCMNDWDDRFIPGLFKLKDTMGEMSMMM 412

Query: 231 NNAVAMLIPKYL 242
                  + K+ 
Sbjct: 413 EITAKEFVNKFE 424


>gi|325263925|ref|ZP_08130658.1| ExsB family protein [Clostridium sp. D5]
 gi|324030963|gb|EGB92245.1| ExsB family protein [Clostridium sp. D5]
          Length = 244

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 14/217 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +    HI V +SGG DS+ LL ALH +         + SAI+V+         ++  +  
Sbjct: 20  IQEGDHIAVGISGGKDSLTLLYALHGLKRFYP-KHFELSAITVNLGF---ENFDLSPIQA 75

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +C  L + + +V  +      + + +T   +   + R   +++  K +    +  AH  D
Sbjct: 76  LCKELEVPYRIVDSEIYHILFDVRKETNPCSLCAKMRKGALNDAIKEMGCNKVAYAHHKD 135

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ +        +G   S    T L  ++L + RP +     D+  F  + N+   
Sbjct: 136 DIIETMLLSLI----FEGRFHSFSPKTYLDRMDLTVIRPIMFIDEADVIGFKNKYNLPVV 191

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                 D   +R   +  VR ++      + + F+ +
Sbjct: 192 GSKCPVDGYTKRQYAKELVRQLNTEHPGARERMFRAI 228


>gi|183985093|ref|YP_001853384.1| cell cycle protein MesJ [Mycobacterium marinum M]
 gi|183178419|gb|ACC43529.1| cell cycle protein MesJ [Mycobacterium marinum M]
          Length = 323

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 89/275 (32%), Gaps = 27/275 (9%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           +F    L       + +SGG DS+ L      +           +A+ VDH L+  +   
Sbjct: 16  KFASTHLDATDRWSIGLSGGPDSLALTAVAARLRPT--------TALIVDHGLQPDSAAV 67

Query: 70  VRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAA---REARYALISEHAKTINATLIMTA 125
                     L  +A  V+  +   P           R ARY  +  H        ++ A
Sbjct: 68  SETARAQAVSLGCVAARVLRVQVGNPAGAGGGLEAAARTARYGALDAHRDGP----VLLA 123

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ETV +   R    + +             +    RP L  RR        +  
Sbjct: 124 HTLDDQAETVLLGLGRGSGARSIAGM-------RPHDPPWCRPLLGVRRGVTHDACRELG 176

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           ++  +DP N+D RF R R+R  V  +    L   +            A   L+       
Sbjct: 177 LTAWQDPHNSDRRFTRTRLRAEVLPLLEEVLGGGVAAALARTATALRADTELLDAIAAEA 236

Query: 246 MRSIIAISQD----ILNIDSTLLFYLLRVSAAICG 276
           + + +  S      +  +   +   ++R      G
Sbjct: 237 LPTAVVDSGLDTSVLATLPDPVRRRVIRSWLLAGG 271


>gi|306836931|ref|ZP_07469883.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium accolens ATCC 49726]
 gi|304567186|gb|EFM42799.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium accolens ATCC 49726]
          Length = 345

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 48/296 (16%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  VR+      + V +SGG+DS+ L  A+ +   D         A+ VDH L++ ++
Sbjct: 20  ACRRAVRAAQLDHTVGVGLSGGADSLALCAAMIAEGHD-------VIALCVDHGLQDGSR 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTG-------------LMAAAREARYALISEHA 114
           ++    +     L     V+  +  +                 + AAA E R    S  A
Sbjct: 73  EQAERAARQAESLGARARVLEVQVPEEAGNSLEAAARQARYQAMSAAACEGRENAASCRA 132

Query: 115 --------------KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                         +   A  I  AHT DDQ ET+ + + R        ++GM +  + +
Sbjct: 133 EICERDAEPGKAARRGERALEIAVAHTADDQAETLLLGALRGR------VAGMPERAVVE 186

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220
               + RPFL+ RR D      +  +   +DP N D  F RV +RR +       +    
Sbjct: 187 -GARVVRPFLQVRRADTEGACAELGLEVWQDPQNADTDFRRVALRREIIPELSRVIG--- 242

Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
               D    +  A    +     +   +  A   ++  +        +       G
Sbjct: 243 ---GDAVPALAQAAMDTVRDEEYLATAAT-ADCAELAALPEPRRRRAIAAWLIERG 294


>gi|197122778|ref|YP_002134729.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. K]
 gi|196172627|gb|ACG73600.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter sp. K]
          Length = 450

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 138/399 (34%), Gaps = 25/399 (6%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +E+ R   R L  PA  +LVA+SGG+DS    +         +    +  A+ +DH LR 
Sbjct: 14  LETARR--RRLFGPADRVLVALSGGADSTA--LLAALAALRDAGALAEVRALYLDHGLRA 69

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            ++ E       C+RL +               + A AR  RYA + E A    AT I T
Sbjct: 70  GSEPEAASARAACARLGVPLEERRLAVGA--GNVQAEARRVRYAALREAAARAGATRIAT 127

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            HT  DQ ETV +R  R    +G+         +      + RP +   RE+  ++L   
Sbjct: 128 GHTLGDQAETVLLRLLRGAGARGLA-------AIPPRRGAVIRPLIDRTREEGNAYLRAI 180

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            + W +DP+N    + R R+R  +  +   A     +                + +    
Sbjct: 181 GLRWADDPTNAVPGYARNRLRLELWPLLRAAAPAADRALARAADLARED-ERALDRRARA 239

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVS 303
                 A+    L  +   +   +         G       + +  V+  L+ G+ G V+
Sbjct: 240 VAGGGTAVDVAALRGEPLAVRRRVVRRLWRAATGSGRALEAQHVAAVLALLRRGRPGEVA 299

Query: 304 I-GRVVIDRRANFLWITRAVRNLPTL--ILYPEETTVWDGRYQFQNLSDSLIQIGPQSYR 360
           + G      R   L +      +P +  +  P       GRY    L ++ ++IG     
Sbjct: 300 LPGGRRARCRYGRLELAGPAAPVPEVSPVEVPG-----PGRYALPAL-EAWVEIGAARPA 353

Query: 361 KADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399
               P  +                G K       R + +
Sbjct: 354 AVPWPLTLRTRRPGDRFRPEGGPGGTKLKRWLIDRKVPR 392


>gi|225561815|gb|EEH10095.1| PP-loop family protein [Ajellomyces capsulatus G186AR]
          Length = 688

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG+DSM L      ++S+R    ++     VDH  RE + DE + V+    
Sbjct: 39  PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFIVDHLAREGSTDEAQKVAGWLR 98

Query: 79  RLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+++ + S        +     AR+ RY ++ +  K  N   +   H  DD +E
Sbjct: 99  ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMCDT 156
           TV  R  R    +  GL G+   
Sbjct: 159 TVLSRLTRGQ-RQATGLKGVASI 180



 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV------RD 210
           + +  +++ RPF    +  + S  L+  I +  D +N D     R  +R  +      R 
Sbjct: 249 IAEGGIYLFRPFNSFPKSRLTSTCLEGGIKFVTDRTNFDPTLTSRNTLRHLLSNDMLPRA 308

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +   ++   ++  Q +  ++ N     +  
Sbjct: 309 LQAPSILQLIENSQRISDELGNESNAFLET 338


>gi|15827015|ref|NP_301278.1| hypothetical protein ML0213 [Mycobacterium leprae TN]
 gi|221229493|ref|YP_002502909.1| hypothetical protein MLBr_00213 [Mycobacterium leprae Br4923]
 gi|6137303|sp|O69538|TILS_MYCLE RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|3097231|emb|CAA18805.1| hypothetical protein MLCB2548.18c [Mycobacterium leprae]
 gi|13092562|emb|CAC29721.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219932600|emb|CAR70306.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 323

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/261 (22%), Positives = 94/261 (36%), Gaps = 27/261 (10%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR-I 82
           VA+SGGSDS+ L      + S         +A  VDH L+  +             L  +
Sbjct: 30  VALSGGSDSLALTAVAAQLRST--------TAFIVDHGLQSDSAAVAETARKQAISLGCV 81

Query: 83  AHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
              V+  +      P+ GL AAAR A                ++ AHT DDQ ETV +  
Sbjct: 82  DAQVLCVQIDPPFGPKGGLEAAARAA----RYAVLGANRNGPVLLAHTLDDQAETVLLGL 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R    + +             +    RP L  RR   R+   +  ++  +DP NTD R+
Sbjct: 138 GRGSGARSIAGM-------RPHDPPWCRPLLGVRRSVPRAACHELGLNAWQDPHNTDCRY 190

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA----ISQD 255
            R R+R  V  +    L   + +              LI  +    + +I A     ++ 
Sbjct: 191 TRTRLRLEVLPLLEDVLGGGVVEALARTATALREDTELIDTFAAQALPNICAGSGLHARA 250

Query: 256 ILNIDSTLLFYLLRVSAAICG 276
           +  +   +   ++R      G
Sbjct: 251 LAALPDAVRRRVIRGWLLNGG 271


>gi|225028631|ref|ZP_03717823.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353]
 gi|224954041|gb|EEG35250.1| hypothetical protein EUBHAL_02910 [Eubacterium hallii DSM 3353]
          Length = 241

 Score =  130 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 86/213 (40%), Gaps = 14/213 (6%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I V +SGG DS+ LL AL  + +     K    A++VD          +  + + C +
Sbjct: 24  DKIAVGISGGKDSLTLLYALSYLRNFYPH-KFDIVAVTVDLGF---DNLNLEEIREFCKK 79

Query: 80  LRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L + + ++  +        + ++   +   + R   +++  K +    +  AH  DD LE
Sbjct: 80  LGVEYQIIKTQIAEVVFQVRKESNPCSLCAKMRKGALNDAMKELGCNKVAYAHHKDDLLE 139

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           ++ M        +G   +    T L    L + RP L     D++ F+ + N+   + P 
Sbjct: 140 SMMMSFL----FEGRIHTFAPVTYLDRSGLTVIRPLLFLYEGDVKGFVKEYNLPVVKSPC 195

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             D   +R  V+  + +I+      K +  + +
Sbjct: 196 PVDGSTKRENVKNLIGEINHQYPGAKARMIRAV 228


>gi|157953860|ref|YP_001498751.1| hypothetical protein AR158_C670L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068508|gb|ABU44215.1| hypothetical protein AR158_C670L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 504

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/252 (20%), Positives = 95/252 (37%), Gaps = 27/252 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +R  V P  I +++SGG DSM L   L  +   R F   K +   V++  R  
Sbjct: 185 VKAVEKALRD-VKPGEITMSLSGGVDSMTLFHILDGL---RGFYDYKMNVAMVNYTNRVC 240

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTI 117
           A DE  +V+D  + L    SV   +    +  +            R+ RY      ++  
Sbjct: 241 AYDEEYFVTDWANWLGYPISVRRIEEINRKPCIDADIRTLYETYTRKVRYNTYKTISRE- 299

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H  DD LE +          K   L+GM D ++    +   RP L   ++DI
Sbjct: 300 --AFVAMGHNKDDCLENILQNIC--SGHKYDNLNGM-DIVVVQDGIKFFRPLLDVSKDDI 354

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD-------IDLHALYLKMKKFQDLRVKV 230
             +    NI +  + +     F+R  VR  +           +  L+      +++ + +
Sbjct: 355 IEYARGHNIPYLPNSTPA--HFKRGMVRNSIVPCMNDWDDRFIPGLFKLRDTMREMSMMM 412

Query: 231 NNAVAMLIPKYL 242
                  + K+ 
Sbjct: 413 EITAKEFVNKFE 424


>gi|269128702|ref|YP_003302072.1| tRNA(Ile)-lysidine synthetase [Thermomonospora curvata DSM 43183]
 gi|268313660|gb|ACZ00035.1| tRNA(Ile)-lysidine synthetase [Thermomonospora curvata DSM 43183]
          Length = 335

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/318 (21%), Positives = 116/318 (36%), Gaps = 15/318 (4%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L     +LVA SGG+     L    +   +      +   ++VDH L+E +    + V 
Sbjct: 20  ELPAGMPVLVACSGGA---DSLALAAATAFEAPRAGRRAGGVTVDHRLQEGSGHVAQTVV 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
                L +  +           G   AAR ARYA + E A+   A  ++  HT DDQ ET
Sbjct: 77  RAMRELGLDPAESVAVTVTGPGGPENAARRARYAALDEAARRAGA-AVLLGHTLDDQAET 135

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   L+GM         +   RP L   R   R       ++  +DP N
Sbjct: 136 VLLGLARGSGAR--SLAGMPPRFQRGE-ICYMRPLLGLERATTRRACRAMGLTPWDDPHN 192

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV----NNAVAMLIPKYLTVHMRSII 250
            D  + RVR+RR V      AL   +        ++      A+  L  +  +       
Sbjct: 193 EDPAYTRVRLRREVMPALEKALGPGVAAALARTARLLRDDAEALDALAERARSEVTGDDG 252

Query: 251 AISQDIL-NIDSTLLFYLLRVSAAICG---GQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
           A+    L  +   +   +LR +A   G   G ++      ++R++   +  +   +  G 
Sbjct: 253 ALDAAALGELPRAVRTRVLRGAAVEAGSPAGTLAAVHVEELDRLITDWRGQRHVDLPGGV 312

Query: 307 VVIDRRANFLWITRAVRN 324
             + R    L+    +  
Sbjct: 313 RALRRYGKLLFRRGEIAA 330


>gi|221632326|ref|YP_002521547.1| putative bifunctional protein tilS/hprT [Thermomicrobium roseum DSM
           5159]
 gi|221156484|gb|ACM05611.1| putative bifunctional protein tilS/hprT [Thermomicrobium roseum DSM
           5159]
          Length = 695

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 21/282 (7%)

Query: 4   SPIESVRFFVRSLVYPA------HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           S I +V   VR+ +  A       I+V  SGG DS+GLL +L  + + R         + 
Sbjct: 42  SAISAVLRVVRTALEEAGLSGHDRIIVGFSGGPDSLGLLWSLQHL-AHRGLAPTPIP-VH 99

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEH 113
           +DH L+ ++         + S L +   VV    S      + GL A AR ARYA +++ 
Sbjct: 100 IDHGLQSSSSTMAERAIALGSELGLVVRVVQVNVSLWPEYKEGGLEAGARAARYAALAQV 159

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS--------GMCDTILYDLNLWI 165
           A+    + I   HT DDQ ETV +R  R     G+            +        ++ +
Sbjct: 160 ARAEGTSWITVGHTRDDQAETVLLRLLRGAGLDGLAAMRPVTELRIPLDPLHREFASIRL 219

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            RP LR RR  +R+ +    +   EDP+N    +ER  +RR V  I              
Sbjct: 220 IRPLLRIRRSVVRAAVELLGLQPLEDPTNLLLSYERNAIRRRVLPILEQLRPGTTDALAQ 279

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
           +  ++    A  + +        +     D L +D      L
Sbjct: 280 VAEQL-REDAEFLQRVARETSAQVFRPEADFLILDRAAFRAL 320


>gi|169627625|ref|YP_001701274.1| putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus ATCC
           19977]
 gi|169239592|emb|CAM60620.1| Putative tRNA(Ile)-lysidine synthase [Mycobacterium abscessus]
          Length = 296

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 100/258 (38%), Gaps = 18/258 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA+SGG           ++ +         +A+ VDH L++ +             L 
Sbjct: 4   VAVALSGG-------ADSLALAAAAVARAWSVTALIVDHGLQQDSAQVAARARSQALALG 56

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
            + +VV         GL AAAR ARYA + +     +   ++ AHT DDQ ETV +   R
Sbjct: 57  CSDAVVLSVTVDGVGGLEAAARSARYAALEQAR---DGRPVLLAHTLDDQAETVLLGLGR 113

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +      +     +D      RPFL  RR + RS+  +  I+  EDP N D RF R
Sbjct: 114 GSGARS-----IAGMRPWDD--PWGRPFLDRRRTETRSYCDELAITAWEDPHNVDSRFVR 166

Query: 202 VRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNID 260
           VR+R  V  +    L     +      + + +    L  +       +      D+  + 
Sbjct: 167 VRLRHEVLPLLEEVLGGGVAEALARTALSLQDDGDALDAQARAAFPGAQGLAISDLRGLT 226

Query: 261 STLLFYLLRVSAAICGGQ 278
             +   ++R+     G Q
Sbjct: 227 PAVRRRVIRLWLLAGGAQ 244


>gi|157953048|ref|YP_001497940.1| hypothetical protein NY2A_B744L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123275|gb|ABT15143.1| hypothetical protein NY2A_B744L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 504

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 20/213 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +R  V P+ I +++SGG DSM L   L  +   R F   K +   V++  R  
Sbjct: 185 VKAVEKALRD-VKPSEITMSLSGGVDSMTLFHILDGL---RGFYGYKMNVAMVNYTNRAC 240

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL--------MAAAREARYALISEHAKTI 117
           A DE  +V+D  + L    SV   +    +  +            R+ RY      +   
Sbjct: 241 AYDEEYFVTDWANWLGYPISVRRIEEINRKPCIDANIRTLYETYTRKVRYNTYKSISHE- 299

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H  DD LE +          K   L+G+   +  D N    RP L   +++I
Sbjct: 300 --AFVAMGHNKDDCLENILQNIC--SGHKYDNLAGIVTVVKQDDN-NFFRPLLDVSKDEI 354

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
            ++    NI +  + +     F+R  VR FV  
Sbjct: 355 IAYARYHNIPYLPNSTPA--HFKRGMVRNFVVP 385


>gi|302389237|ref|YP_003825058.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302199865|gb|ADL07435.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 247

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 15/206 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+ ++        +     I V VSGG DS  LL  L  ++   S       A+++D  
Sbjct: 9   FLTKVKKAIIDYGMIENGDKIAVGVSGGKDSTTLLYIL-DLVRKHSPLDFDIVAVNIDLG 67

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAK 115
                + ++  + D C  L+I   VV    ++       ++   +     R   +   A 
Sbjct: 68  W----EMDLTPLEDFCRNLQIPLKVVKTDIARVVFEIRKESNPCSLCSRMRRGTLDSAAV 123

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    +  AH  DD +ET+ +         G   +    T L   N+ + RP +     
Sbjct: 124 ELGCNKVALAHHADDVIETLLLNLI----FTGRFDTFEPKTYLSRKNVTLIRPLIYLSER 179

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFER 201
            I++ +  R +   E P   D R +R
Sbjct: 180 TIKTIVKSRGLPVIESPCPADGRTKR 205


>gi|219125079|ref|XP_002182816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405610|gb|EEC45552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 770

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 109/308 (35%), Gaps = 19/308 (6%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           S      I++++SGG DSM +  AL  +     +  ++ +A+ +D+  R  +K E  YV 
Sbjct: 410 SNPKTRKIIISLSGGVDSMVIASALAHLRRSLGY-NLQLTAVHIDYANRPDSKAEASYVE 468

Query: 75  DVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             C +L I + V   +      T      +  R    SE  + +    +M  H   D  E
Sbjct: 469 RYCQQLEIEYHVRRIEEVTRGVTNRDEYEKRTREQARSEVDEEVG---VMLGHHRGDLRE 525

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            V   + +      + LSGM    + D  + I RP LR  +  I  +     + + +D +
Sbjct: 526 NVLSNAHKGSGP--LDLSGMTAVSIND-GVIIHRPLLRLEKTVIFDYAHTFGVPYFKDTT 582

Query: 194 NTDDRFERVRVRRFVRDIDLHALYL-KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
                  R ++R  +  +         M    +L V+ ++   ++    L   +  +   
Sbjct: 583 PHWS--TRGKLRNHLMPLLEEIYGEGSMNNLSNLAVESDDCRELVNTSTLKPFLDGLTLY 640

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
              I    +      L     +           ++  V L + S K     +GRV  +  
Sbjct: 641 PMGIRFKTACWKRNGLFFWKFVL--------RETLHSVGLGMFSDKSVASFLGRVQAETI 692

Query: 313 ANFLWITR 320
                  R
Sbjct: 693 REGWLQCR 700


>gi|46117032|ref|XP_384534.1| hypothetical protein FG04358.1 [Gibberella zeae PH-1]
          Length = 742

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 20/190 (10%)

Query: 2   FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI---KFS- 54
           F   +++V   RF       P  I++AVSGG DSM L   +   +      K+       
Sbjct: 84  FKDAVDAVCRPRFPTARFARPQRIILAVSGGVDSMALAFLVSKFIRMFRGSKVADNPVHG 143

Query: 55  --AISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQT-------GLMAAAR 103
             A+ VDH LR+ +  E   V     +L I  +V  ++WK+ +           +   AR
Sbjct: 144 AMAVVVDHKLRDGSDLEAAGVVKELRKLDIKANVAPLAWKDERYNGLDPRKLPNVEGLAR 203

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDL 161
             RY  +    + + A  +  AH  DDQ ETV MR    +  +G+      ++I   YD+
Sbjct: 204 TYRYRALGRICEFMGANSLFFAHHRDDQYETVLMRLLGGHGYRGLRGIREANSIPECYDM 263

Query: 162 NLWISRPFLR 171
           +       L 
Sbjct: 264 HGVYKSGLLD 273



 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR-FERVRVRRFVRDIDLHALYL 218
           D  + I RP L   ++ + +      ISW ED +NTD     R  +R  VR+ +L     
Sbjct: 343 DGGVMIYRPLLEFDKDRLIATCEANGISWVEDETNTDPTLTTRNAIRYMVRNHELPKALQ 402

Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
           K                        +   +++ 
Sbjct: 403 KPAILSLAERCKQRTKEEEAEAKRYLVREAVVK 435


>gi|134299184|ref|YP_001112680.1| PP-loop domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134051884|gb|ABO49855.1| PP-loop domain protein [Desulfotomaculum reducens MI-1]
          Length = 252

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 90/235 (38%), Gaps = 18/235 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISV 58
           M +    ++  F  +L+ P   ++V VSGG DS  LL  L             +  A+ +
Sbjct: 9   MLVQVTRAITHF--NLIEPGDKVVVGVSGGKDSNSLLYCLSLYHRRYLKKVPFELHAVHL 66

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISE 112
           D  L      +++ + ++C RL I  ++          + + +T   +     R   +  
Sbjct: 67  DMGL----GADLQPMKELCQRLAIPLTLKHTDIGTILFDIRKETNPCSLCANLRRGALHS 122

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  +    +  AH  DD +ET +M    +   K    +    T L   +L + RPF+  
Sbjct: 123 AALELGFNKVALAHHLDDVMETFFMSLLFNGNMK----TFSPKTYLDRTDLTLIRPFVYV 178

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
               +++ L   NI    +P   + + +R  ++  +  +      ++ K    L 
Sbjct: 179 TENQVKALLPLENIPVIHNPCPANKQTKREEIKNLINQLSEQYPDIRQKFLTSLH 233


>gi|313772802|gb|EFS38768.1| tRNA(Ile)-lysidine synthetase [Propionibacterium acnes HL074PA1]
          Length = 311

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 109/322 (33%), Gaps = 25/322 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+  ++V   VR +      +V  SGG DS+ L +A     S R    ++   + VDH L
Sbjct: 11  LAVAQAVERMVRGV---DRFVVGCSGGPDSLALALA-SKWASRRCESGVR--VVIVDHQL 64

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAAREARYALISEHAKTINATL 121
           ++ + +      D+  R  +   V           G  AAAR A     +          
Sbjct: 65  QQGSDEVAERTRDLLVRRGMDACVRRVDVDADDPDGPEAAARTA---RRAALLDAAGDEP 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ E V +   R      +         +   +     P L  RR       
Sbjct: 122 VLLGHTRDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEVRRAQTVQAC 174

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  +   +DP N D RF R RVR  +  +             ++   +  +  +L  + 
Sbjct: 175 REWEVEPWQDPHNGDPRFLRSRVRTELMPVMEEVPGP------EVAASLARSATLLAGED 228

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAA--ICGGQISLPGYRSMERVMLFLKSGKR 299
             V   + +   +  +  +       + V  A  +    +       ++ V+  L     
Sbjct: 229 EVVARVARMWADEHGVKANELPGLRGVEVGLARRVVKEWLPQARMVHVDAVLGLLDGPGG 288

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
             V +    ++ R   L++ R 
Sbjct: 289 AGVDVPGGRVEMRQGTLYLARR 310


>gi|297621115|ref|YP_003709252.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU
           86-1044]
 gi|297376416|gb|ADI38246.1| putative PP-loop superfamily ATPase [Waddlia chondrophila WSU
           86-1044]
          Length = 244

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              +I VA+SGG DS+ LL  L ++ S + F     +A+ V       A  ++ Y+S +C
Sbjct: 31  ADQNIAVALSGGKDSLTLLFMLAAI-SGKGFPDFHLAAVHVTGEFSCGAGVDLPYLSAIC 89

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           S+L I   VV   N K +T    +    R  L+ E A+ + A  I   H  DD  +T+ M
Sbjct: 90  SKLNIPF-VVKESNQKLETLECYSCSRERRKLLFEAAEQLGAKTIAFGHHRDDNAQTILM 148

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
                   KG     +    + D    I RP      E+IR F  Q+ 
Sbjct: 149 NML----HKGEFCGNLPKLHMIDYGKTIIRPLTYVSEEEIRRFAEQQG 192


>gi|145222003|ref|YP_001132681.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK]
 gi|145214489|gb|ABP43893.1| tRNA(Ile)-lysidine synthetase [Mycobacterium gilvum PYR-GCK]
          Length = 322

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/322 (21%), Positives = 117/322 (36%), Gaps = 27/322 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++  F R+  +P    VA+SGG DS+ L     ++           +A+ VDH L+  + 
Sbjct: 13  ALVDFARTHRFPPPWCVALSGGPDSLALTAVAATLHPT--------TALIVDHRLQPGSA 64

Query: 68  DEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           D      +    L  +A  V+      P  G  AAAR ARY  + +     +   ++  H
Sbjct: 65  DVAAAAREQALALGCVAAQVLPVDVGSPG-GPEAAARTARYRALDDAR---DGKPVLLGH 120

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R    +      +     YD  L   RP L  RR+       +  +
Sbjct: 121 TLDDQAETVLLGLGRGSGPRS-----IAGMRPYD--LPWGRPLLGVRRDTTHRACAELGL 173

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           +  +DP N D R+ RVR+R  V  +    L   + +              ++       +
Sbjct: 174 NPWQDPHNLDPRYTRVRLRTEVLPLLEDVLGGGVAEALARTAAALREDTDVLDALAAEAV 233

Query: 247 R-SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQ--ISLPGYRSMERVMLFLKSGK---R 299
                 +    L ++ + L    +R      G +             +  +   G     
Sbjct: 234 APGDADLDVTALADLPTALRRRAVRGWLLAAGARDLTDKHLRAVDALITDWHGQGGVAVP 293

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
           G ++  R+ + R  N L + R 
Sbjct: 294 GGLTRERLFVARNRNRLGMYRE 315


>gi|260587706|ref|ZP_05853619.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|331084003|ref|ZP_08333110.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541971|gb|EEX22540.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|330402365|gb|EGG81935.1| hypothetical protein HMPREF0992_02034 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 238

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 82/217 (37%), Gaps = 18/217 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDV 76
              I + VSGG DS+ +L ALH ++        +  AI+VD  H            +  +
Sbjct: 23  GDKIAIGVSGGKDSLTMLYALHGLMRFYP-KHFQLEAITVDLGHK-----DFCADKIQRL 76

Query: 77  CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           C  L I  ++V           + +    +   + R   ++  AK +    +  AH  DD
Sbjct: 77  CDSLEIPFTLVKTDIAPIIFEERKEQNPCSLCAKMRKGALNNAAKDLGCNKVAYAHHKDD 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+ +        +G   +    T L  ++L + RP L     D+  F  +  +   +
Sbjct: 137 VVETMLLSLI----YEGRFHTFSPKTYLDRMDLTVIRPLLYVNEADVIGFKNKYQLDIEK 192

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            P   D   +R   +  ++ +       K + F  +R
Sbjct: 193 SPCPVDGYTKRQYAKELLKTLTKENPGAKERMFTAIR 229


>gi|118619374|ref|YP_907706.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99]
 gi|118571484|gb|ABL06235.1| cell cycle protein MesJ [Mycobacterium ulcerans Agy99]
          Length = 323

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 88/274 (32%), Gaps = 27/274 (9%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L       + +SGG DS+ L      +           +A+ VDH L+  +    
Sbjct: 17  FASTHLDATDRWSIGLSGGPDSLALTAVAARLRPT--------TALIVDHGLQPDSAAVS 68

Query: 71  RYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAA---REARYALISEHAKTINATLIMTAH 126
                    L  +   V+  +   P           R ARY  +  H        ++ AH
Sbjct: 69  ETARAQAVSLGCVTARVLRVQVGNPAGAGGGLEAAARTARYGALDAHRDGP----VLLAH 124

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R    + +             +    RP L  RR        +  +
Sbjct: 125 TLDDQAETVLLGLGRGSGARSIAGM-------RPHDPPWCRPLLGVRRGVTHDACRELGL 177

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           +  +DP N+D RF R R+R  V  +    L   +            A   L+       +
Sbjct: 178 TAWQDPHNSDRRFTRTRLRAEVLPLLEEVLGGGVAAALARTATALRADTELLDAIAAEAL 237

Query: 247 -RSIIAISQD---ILNIDSTLLFYLLRVSAAICG 276
             +++    D   +  +   +   ++R      G
Sbjct: 238 PTAVVDFGLDTSVLATLPDPVRRRVIRSWLLAGG 271


>gi|118462421|ref|YP_879811.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104]
 gi|118163708|gb|ABK64605.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium 104]
          Length = 320

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 88/260 (33%), Gaps = 23/260 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
              VA+SGG DS+ L      +           +A+ VDH L+  +    +        L
Sbjct: 27  RWCVALSGGPDSLALTAVAARLRPT--------TAVIVDHGLQPDSAAVAQTARAQAIAL 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
               + V   +   + G  AAAR A                ++  HT DDQ ETV +   
Sbjct: 79  GCVAAQVISVHVDGEGGPEAAARRA----RYAALAAHRDGPVLLGHTLDDQAETVLLGLG 134

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + +             +    RP L  RR    +   +  ++  +DP N+D RF 
Sbjct: 135 RGSGVRSIAGM-------RPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPHNSDRRFT 187

Query: 201 RVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           R R+R  V  +    L       + +      + N  +  L  + L             +
Sbjct: 188 RARLRAEVLPLLEEVLGGGVAEALARTATALREDNEVLDALAERALPAAQAGAGLQVAAL 247

Query: 257 LNIDSTLLFYLLRVSAAICG 276
             +D+ +   ++R      G
Sbjct: 248 AGLDAPVRRRVIRAWLLAGG 267


>gi|242399147|ref|YP_002994571.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
 gi|242265540|gb|ACS90222.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
          Length = 331

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 30/241 (12%)

Query: 8   SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-- 62
            V+  VR    +     I V VSGG DS+ LL  LH +     F   +  AI++D  +  
Sbjct: 43  KVKQTVRKYGLIKRGDRIAVGVSGGKDSVVLLHILHKLSQKFPF---EIIAITIDEGIEG 99

Query: 63  -RETAKDEVRYVSDVCSRLRIAHSVVSWK-----------------NSKPQTGLMAAARE 104
            R  +   V        +L I H + S+K                   + + G  +    
Sbjct: 100 YRPES---VEIAKRNAKKLGIEHKIYSFKEYIGFSLDETVSIMGSFEKRERVGACSYCGV 156

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            R  LI+  A+ + A  +   H  DD+++   M   R    + +G +G    ++++  + 
Sbjct: 157 WRRWLINYAAQDLEADKLAVGHNLDDEVQMFLMNVMRGDVAR-LGRTGPYYEVIHEGLVP 215

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
             +P      ++I  + +  NI              R  +R ++ +++      K +  +
Sbjct: 216 RIKPLREVPEKEIVLYAILNNIEVDFSECPYAVEAFRAEIRDWINEMEEKHPGTKYQILR 275

Query: 225 D 225
            
Sbjct: 276 S 276


>gi|154483514|ref|ZP_02025962.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC
           27560]
 gi|149735424|gb|EDM51310.1| hypothetical protein EUBVEN_01218 [Eubacterium ventriosum ATCC
           27560]
          Length = 234

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 18/219 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDV 76
              I V +SGG DS+ LL AL+ +       K    AI+VD    +++ +K     +   
Sbjct: 23  GDKIAVGISGGKDSLTLLYALNGLKRFYP-KKFDVVAITVDLDFGIQDFSK-----IEKY 76

Query: 77  CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           C+ + I + VV  +      N + ++   +   + R   +++ AK+I    I  AH  DD
Sbjct: 77  CNDMDIEYYVVKTEIANVVFNERQESNPCSLCAKMRKGALNDFAKSIGCNKIAYAHHKDD 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+++        +G        T L  + L + RP +     D+  F  +  +   +
Sbjct: 137 MIETMFLSLI----YEGRFHCFSPVTYLDKMELTVIRPLMYVPEADVIGFTNKYELPVAK 192

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
                D   +R  V+  V+ ++      K + F+ +  K
Sbjct: 193 SKCPVDGHTKREYVKNIVKQLNKENPGCKERFFRAVLNK 231


>gi|220917561|ref|YP_002492865.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955415|gb|ACL65799.1| tRNA(Ile)-lysidine synthetase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 450

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 137/397 (34%), Gaps = 21/397 (5%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +E+ R   R L  PA  +LVA+SGG+DS    +         +    +  A+ +DH LR 
Sbjct: 14  LETARR--RRLFGPADRVLVALSGGADSTA--LLAALAALRDAGALAEVRALYLDHGLRA 69

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            ++ E       C+RL +               + A AR  RYA + E A    A+ I T
Sbjct: 70  GSEPEAASARAACARLGVPLEERRLAVGA--GNVQAEARRVRYAALREAAARAGASRIAT 127

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            HT  DQ ETV +R  R    +G+         +      + RP +   RE+  ++L   
Sbjct: 128 GHTLGDQAETVLLRLLRGAGARGLA-------AIPPRRGPVIRPLIDRTREEGNAYLRAM 180

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            + W +DP+N    + R R+R  +  +   A     +                + +    
Sbjct: 181 GLGWADDPTNAVPGYARNRLRLELWPLLRAAAPAADRALARAADLARED-ERALDRRARA 239

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVS 303
                 A+    L  +   +   +         G       + +  V+  L+ G+ G V+
Sbjct: 240 VAGGGTAVDVAALRGEPLAVRRRVVRRLWRAATGSGRALEAQHVAAVLALLRRGRPGEVA 299

Query: 304 I-GRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKA 362
           + G      R   L +      +P +           GRY    L D+ +++G     + 
Sbjct: 300 LPGGRRARCRYGRLELAGPAAPVPVVAPVEVPGP---GRYALPAL-DAWVEVGAARPAEV 355

Query: 363 DVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK 399
             P  +                G K       R + +
Sbjct: 356 PWPLTLRTRRPGDRFRPEGGPGGTKLKRWLIDRKVPR 392


>gi|240275421|gb|EER38935.1| PP-loop family protein [Ajellomyces capsulatus H143]
          Length = 688

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG+DSM L      ++S+R    ++     VDH  R  + DE   V+    
Sbjct: 39  PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFVVDHLARGGSTDEAHKVAGWLR 98

Query: 79  RLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+++ + S        +     AR+ RY ++ +  K  N   +   H  DD +E
Sbjct: 99  ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155
           TV  R  R    +  GL G+  
Sbjct: 159 TVLSRLTRGQ-RQATGLKGVAR 179



 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV------RD 210
           + +  +++ RPF    +  + S  L+  I +  D +N D     R  +R  +      R 
Sbjct: 249 IAEGGIYLFRPFNSFPKSRLTSTCLEGGIKFVTDRTNFDPTLTSRNTLRHLLSNDMLPRA 308

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +   ++   ++  Q +  ++ N     +  
Sbjct: 309 LQAPSILQLIENSQRISDELGNESNAFLET 338


>gi|325091259|gb|EGC44569.1| PP-loop family protein [Ajellomyces capsulatus H88]
          Length = 688

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG+DSM L      ++S+R    ++     VDH  R  + DE   V+    
Sbjct: 39  PSRIGLAVSGGADSMALAFLCRQLISERLIPDLQVKPFVVDHLARGGSTDEAHKVAGWLR 98

Query: 79  RLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+++ + S        +     AR+ RY ++ +  K  N   +   H  DD +E
Sbjct: 99  ELGYDPSILTLRWSDGTDPSSLSDFETLARKLRYQILGQACKKYNTRALFLGHHLDDNVE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155
           TV  R  R    +  GL G+  
Sbjct: 159 TVLSRLTRGQ-RQATGLKGVAR 179



 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV------RD 210
           + +  +++ RPF    +  + S  L+  I +  D +N D     R  +R  +      R 
Sbjct: 249 IAEGGIYLFRPFNSFPKSRLTSTCLEGGIKFVTDRTNFDPTLTSRNTLRHLLSNDMLPRA 308

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +   ++   ++  Q +  ++ N     +  
Sbjct: 309 LQAPSILQLIENSQRISDELGNESNAFLET 338


>gi|94502298|ref|ZP_01308777.1| ATP-binding PP-loop protein [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94451150|gb|EAT14096.1| ATP-binding PP-loop protein [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 153

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  I   +F++++      I V+VS G DSM LL  L  +             I  +  
Sbjct: 7   FLKIINK-KFYLKN----KKIYVSVSSGLDSMVLLDVLIKIC------NFTICVIHCNFN 55

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           LR   +  +  ++ + C + +I     ++   K    +   AR+ RY             
Sbjct: 56  LRGKDSDKDELFIQEFCLKHKILFKSKNFNPIKSNFSIQMMARKLRYDWFKYLLNNSYCD 115

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGM 148
            I   H  DD +ET ++   R    KG+
Sbjct: 116 YIALGHHLDDSIETFFINLIRGTGIKGL 143


>gi|116329484|ref|YP_799204.1| PP family ATPase [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329912|ref|YP_799630.1| PP family ATPase [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|122282315|sp|Q04W48|TILS_LEPBJ RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|122282736|sp|Q04XC4|TILS_LEPBL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|116122228|gb|ABJ80271.1| ATPase of the PP-loop superfamily [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123601|gb|ABJ74872.1| ATPase of the PP-loop superfamily [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 425

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 105/291 (36%), Gaps = 31/291 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR---ETAKDEVRY 72
           L  PA  +++ SGG DS  LL     + +++           +DH +R   E  K  + Y
Sbjct: 28  LSRPA--VLSYSGGKDSSLLLHFYFWLWAEKKIPVPCIY--HLDHSIRFNLEQEKKILDY 83

Query: 73  VS------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                   ++  +  I        + K    L    R  RY  + + +       I+T H
Sbjct: 84  TESTFPFPNLFKKKNIP-----ALSQKLGKTLEETGRAFRYKDLEKISNQYEG-YIVTGH 137

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
              D LETV++   R      +   G  +   +       RP      ++I++     + 
Sbjct: 138 HSTDYLETVFLNLIRGGGWNSLRTLGWYEKNRF-------RPLFAFTEDEIKTISQSESW 190

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
              ED SN  + + R R+R ++  + L       + +++          +L+ +  +   
Sbjct: 191 PIFEDESNQSNEYLRNRIRNYILPLLLQEGADPDRIYKNFHRMEKPTSKILLKEVSSHKT 250

Query: 247 RSIIAISQDILN--IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
            S + I   +LN   +    F++ R   ++    +        + +M  LK
Sbjct: 251 PSFLKIDVWVLNDLSERERKFFIDRYLRSL---NLHPTTRNFFQDLMDCLK 298


>gi|67515665|ref|XP_657718.1| hypothetical protein AN0114.2 [Aspergillus nidulans FGSC A4]
 gi|40746136|gb|EAA65292.1| hypothetical protein AN0114.2 [Aspergillus nidulans FGSC A4]
 gi|259489693|tpe|CBF90174.1| TPA: PP-loop family protein (AFU_orthologue; AFUA_5G11880)
           [Aspergillus nidulans FGSC A4]
          Length = 609

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 64/245 (26%), Gaps = 65/245 (26%)

Query: 33  MGLLIALHSVLSDRSFG---------------------KIKFSAISVDHCLRETAKDEVR 71
           M L          R                        +    A  VDH  R  + DE  
Sbjct: 1   MALAYLCRQWEVRRQKQKWQQQQHHIPGLTNSNTSSKDEPSVIAFVVDHKARPESTDEAN 60

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            V+     L I   ++    +    +     AR  R+  + +  +      ++  H  DD
Sbjct: 61  TVATWLRELGITTEILPLDWTGIDHSAFETQARRLRFQALGKACRDRGIDALLLGHHQDD 120

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYD------------------------------ 160
            +ET   R       +G GL+G+                                     
Sbjct: 121 NVETTLWRL--SAGARGAGLTGISPVARIPECHGLYGVAASGSAVFARDYWQDQKHEIEQ 178

Query: 161 ----------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVR 209
                       + I RP L   +  + +   +  I +  DP+N D     R  +R  + 
Sbjct: 179 TRRGELPVSTGGIIIHRPLLSFPKSRLLTTCHENGIPYVTDPTNFDPTLTPRNAIRSLLA 238

Query: 210 DIDLH 214
              L 
Sbjct: 239 SNSLP 243


>gi|327355825|gb|EGE84682.1| PP-loop family protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 688

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG DSM L      ++S+R    +K     VDH  RE + +E   V+D   
Sbjct: 39  PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98

Query: 79  RLRIAHSV--VSWKNSKPQTG---LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+  +SW      +        AR+ RY ++ +  +  N+  +   H  DD +E
Sbjct: 99  DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155
           TV  R  R    +  GL G+  
Sbjct: 159 TVLSRVARGQ-RQATGLKGVAS 179



 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 5/140 (3%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA- 215
           + +  +++ RP     +  + S  LQ NI +  D +N D     R  VR  + +  L   
Sbjct: 246 IAEGGIYLFRPLNSFPKSRLTSTCLQNNIQFVNDRTNFDPTLTSRNTVRHLLSNGTLPRA 305

Query: 216 -LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274
                + +  +   ++++ +      +L       + +    L ID      +      +
Sbjct: 306 LQAPSILQLIENSQRISDELMEETNAFLEKVRVLKLDLRTGSLVIDFPGPRVM--EDIGM 363

Query: 275 CGGQISLPGYRSMERVMLFL 294
             G         ++R++  +
Sbjct: 364 SQGVSIRSSPPKLQRILAMV 383


>gi|239607883|gb|EEQ84870.1| PP-loop family protein [Ajellomyces dermatitidis ER-3]
          Length = 688

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG DSM L      ++S+R    +K     VDH  RE + +E   V+D   
Sbjct: 39  PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98

Query: 79  RLRIAHSV--VSWKNSKPQTG---LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+  +SW      +        AR+ RY ++ +  +  N+  +   H  DD +E
Sbjct: 99  DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155
           TV  R  R    +  GL G+  
Sbjct: 159 TVLSRVARGQ-RQATGLKGVAS 179



 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 5/140 (3%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA- 215
           + +  +++ RP     +  + S  LQ NI +  D +N D     R  VR  + +  L   
Sbjct: 246 IAEGGIYLFRPLNSFPKSRLTSTCLQNNIQFVNDRTNFDPTLTSRNTVRHLLSNGTLPRA 305

Query: 216 -LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274
                + +  +   ++++ +      +L       + +    L ID      +      +
Sbjct: 306 LQAPSILQLIENSQRISDELMEETNAFLEKVRVLKLDLRTGSLVIDFPGPRVM--EDIGM 363

Query: 275 CGGQISLPGYRSMERVMLFL 294
             G         ++R++  +
Sbjct: 364 SQGVSIRSSPPKLQRILAMV 383


>gi|289706997|ref|ZP_06503332.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus SK58]
 gi|289556322|gb|EFD49678.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus SK58]
          Length = 392

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 6/192 (3%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           LVA+SGG+DS+ L +A   ++  R   ++    A  VDH L+  +       +DV   L 
Sbjct: 69  LVALSGGADSLALAVACAVLVGTRDGARLGPIGAAVVDHGLQSGSDAVAAAAADVARILG 128

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--NATLIMTAHTFDDQLETVYMR 138
           +   +V   + ++   G  A AR AR   ++  A+       +++TAHT DDQ E V + 
Sbjct: 129 LAPVTVTRVEVARTGDGPEADARRARRVALAAAARDARPGGAVVLTAHTADDQAEQVLLG 188

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             R    +   L+G+           + RP L   R D  +      ++W EDP N D  
Sbjct: 189 LARGSGTR--SLAGIPARGTLPGGAAVVRPLLGLARADTEAICRWAGLTWFEDPHNRDPA 246

Query: 199 FERVRVRRFVRD 210
             R RVR  V  
Sbjct: 247 LLRSRVRTRVLP 258


>gi|289642580|ref|ZP_06474722.1| hypoxanthine phosphoribosyltransferase [Frankia symbiont of Datisca
           glomerata]
 gi|289507575|gb|EFD28532.1| hypoxanthine phosphoribosyltransferase [Frankia symbiont of Datisca
           glomerata]
          Length = 620

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 15/227 (6%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  +  L   + +LVA SGG+DS+ L  AL  +   R+   ++   ++VDH   E + 
Sbjct: 24  AVRRSIADLAPGSLVLVACSGGADSLALAAALAFIAPRRA---LRAGLLTVDHGWYEGSA 80

Query: 68  DEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   V+     L      V+   + + +     A R A    + + A  + A+ ++  H
Sbjct: 81  AQAATVAAHGRALGFDPVEVLPAHSPRSEGAAREARRRA----LLDAAGQLRASALLLGH 136

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +R  R    + +            L+  I RP L  RR   R   L   +
Sbjct: 137 TLDDQAETVLLRLARGSGTRSLAGM-------PRLDGVIRRPLLDVRRSATRDACLAEGL 189

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           +  +DP+N D+ F R RVR  V  +    +   + +       +  A
Sbjct: 190 TPWDDPTNADEAFARARVRHRVLPVLEETIGPGIAEALARTADLLRA 236


>gi|261198252|ref|XP_002625528.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081]
 gi|239595491|gb|EEQ78072.1| PP-loop family protein [Ajellomyces dermatitidis SLH14081]
          Length = 688

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 6/142 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P+ I +AVSGG DSM L      ++S+R    +K     VDH  RE + +E   V+D   
Sbjct: 39  PSRIGLAVSGGPDSMALAFLCKQLISERLIPDLKVKPFIVDHLAREGSTEEAHKVADWLK 98

Query: 79  RLRIAHSV--VSWKNSKPQTG---LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L    S+  +SW      +        AR+ RY ++ +  +  N+  +   H  DD +E
Sbjct: 99  DLGFDPSILTLSWPGGAHPSSFTDFETVARKLRYQILGKACRDYNSRALFLGHHLDDNIE 158

Query: 134 TVYMRSQRDYAEKGMGLSGMCD 155
           TV  R  R    +  GL G+  
Sbjct: 159 TVLSRVARGQ-RQATGLKGVAS 179



 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 5/140 (3%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA- 215
           + +  +++ RP     +  + S  LQ NI +  D +N D     R  VR  + +  L   
Sbjct: 246 IAEGGIYLFRPLNSFPKSRLTSTCLQNNIQFVNDRTNFDPTLTSRNTVRHLLSNGTLPRA 305

Query: 216 -LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI 274
                + +  +   ++++ +      +L       + +    L ID      +      +
Sbjct: 306 LQAPSILQLIENSQRISDELMEETNAFLEKVRVLKLDLRTGSLVIDFPGPRVM--EDIGM 363

Query: 275 CGGQISLPGYRSMERVMLFL 294
             G         ++R++  +
Sbjct: 364 SQGVSIRSSPPKLQRILAMV 383


>gi|254773192|ref|ZP_05214708.1| tRNA(Ile)-lysidine synthetase [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 320

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 88/260 (33%), Gaps = 23/260 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
              VA+SGG DS+ L      +           +A+ VDH L+  +    +        L
Sbjct: 27  RWCVALSGGPDSLALTAVAARLRPT--------TAVIVDHGLQPDSAAVAQTARAQAIAL 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
               + V   +   + G  AAAR A                ++  HT DDQ ETV +   
Sbjct: 79  GCVAAQVISVHVDGEGGPEAAARRA----RYAALAAHRDGPVLLGHTLDDQAETVLLGLG 134

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + +             +    RP L  RR    +   +  ++  +DP N+D RF 
Sbjct: 135 RGSGVRSIAGM-------RPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPHNSDRRFT 187

Query: 201 RVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           R R+R  V  +    L       + +      + N  +  L  + L             +
Sbjct: 188 RARLRAEVLPLLEEVLGGGVAEALARTATALREDNELLDALAERALPAARAGAGLQVAAL 247

Query: 257 LNIDSTLLFYLLRVSAAICG 276
             +D+ +   ++R      G
Sbjct: 248 AGLDAPVRRRVIRAWLLAGG 267


>gi|269216709|ref|ZP_06160563.1| cell cycle protein [Slackia exigua ATCC 700122]
 gi|269129854|gb|EEZ60937.1| cell cycle protein [Slackia exigua ATCC 700122]
          Length = 369

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 97/270 (35%), Gaps = 30/270 (11%)

Query: 4   SPIESVRFFV--RSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             IE V   +  RSL      +++ VSGGSDS  L      + +  + G I    + V+H
Sbjct: 13  RTIERVEALIAERSLASVDNPVVLMVSGGSDSTALAYIGADLRNRGALGFISM--LHVNH 70

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARYAL------- 109
            LR E +  +  +V  +   L I             +    + + AR  RYA        
Sbjct: 71  KLRGEASDADAAFVESLAKALDIPLFACEIDMPALMREGGNMESVARRERYAAARDAVES 130

Query: 110 -ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
                    +A ++ TAHT DD+ E  YMRS       G+          +   + + RP
Sbjct: 131 TCRHLGAPADAGVVFTAHTADDRAENFYMRSIVGTGPGGLRAMKHAS---FVQGVDVRRP 187

Query: 169 FLRCRREDIRSFLL----------QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL 218
            L   R+D+RS++                W ED +N D    R  VR  +          
Sbjct: 188 LLELSRDDLRSYIESLPTDRVATDAAGARWREDATNADTDRFRAFVRHEIVARAKDRNPR 247

Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            ++        + +   +L  +   + +R 
Sbjct: 248 LLETLTRTMNLIADEDDLLEARANEILLRE 277


>gi|295688126|ref|YP_003591819.1| tRNA(Ile)-lysidine synthetase [Caulobacter segnis ATCC 21756]
 gi|295430029|gb|ADG09201.1| tRNA(Ile)-lysidine synthetase [Caulobacter segnis ATCC 21756]
          Length = 408

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 143/390 (36%), Gaps = 36/390 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + V  SGG DS+ LL A            +   A+ VDH L+  +        +    
Sbjct: 21  APLAVGFSGGGDSLFLLKAALDWARPSGRPVL---ALVVDHRLQADSARWTAQAVEKARA 77

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L      ++W   KP  GL AAAR AR+AL++E A+   A +++  HT  D  E+  MR+
Sbjct: 78  LGAEARALAWTGPKPAAGLPAAARRARHALLAEAAREAGAKVLLLGHTASDLAESAAMRA 137

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +          S          ++++ RP L   R +IR+ L     +W EDP+N D R 
Sbjct: 138 EGSTVPDPRAWSP-SPVWPEGRDVFLLRPLLFLTRGEIRAALAAEGQTWLEDPANVDLR- 195

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILN 258
                                           +   ++ P+        + +I +   + 
Sbjct: 196 ------------------------YARARARASGAEIVAPEPDVERRPPLFSIDEAGAVR 231

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWI 318
           +   +    L  +     G    P    +ER++  L+SG+    ++    I+     L I
Sbjct: 232 LPRDIAAAHLAAALLCAAGTERPPRGERLERLLQRLRSGEGFTATLSGARIEAGEMAL-I 290

Query: 319 TR-----AVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIA 373
            R     A   L  L L P ET VWDGR++     + L  +  +    +  P     ++ 
Sbjct: 291 CRDAGETARGGLAPLSLAPGETGVWDGRWEITAGVEPLTVVALKGRASSLSPDQRARLVT 350

Query: 374 QRALSSMPSKEGGKPLLAPFSRFMTKFDLP 403
             A     S    +   AP S  +   D  
Sbjct: 351 LPAAVRPSSPLILRQGAAPCSPVLDGRDFA 380


>gi|167746732|ref|ZP_02418859.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662]
 gi|167653692|gb|EDR97821.1| hypothetical protein ANACAC_01443 [Anaerostipes caccae DSM 14662]
          Length = 244

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 17/227 (7%)

Query: 9   VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           VR  V   + +     I V +SGG DS+ +L AL  +       K +   I+VD      
Sbjct: 10  VRRAVDDYQMIQEGDKIAVGISGGKDSLTMLYALAHLRIFYP-NKFEIHGITVDLGF--- 65

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINA 119
              ++  V  +C  L++ ++VV  + +      + +T   +   + R   ++E  K +  
Sbjct: 66  GNFDITQVEKLCEELKVPYTVVKTEIADVVFERRKETNPCSLCAKMRKGALNEKIKELGC 125

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +  AH  DD +ET  M        +G        T L  ++L + RP +     D+  
Sbjct: 126 NKVAYAHHKDDLVETFLMSML----FEGRLHCFSPVTYLDRMDLKVIRPLMYMDEADVIG 181

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           F  + N+   + P   D   +R   +  ++ +D      K   F+ +
Sbjct: 182 FKNKMNLPVEKSPCPMDGYTKRQYAKETLKKLDEDHPGSKDHMFRAM 228


>gi|296537148|ref|ZP_06899091.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957]
 gi|296262524|gb|EFH09206.1| tRNA(Ile)-lysidine synthetase [Roseomonas cervicalis ATCC 49957]
          Length = 236

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 7/190 (3%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            V VSGG  S+ L +             +   A   DH LR  +  E  +     +   I
Sbjct: 41  AVGVSGGPHSLALALLARDFARPLGGRVLALVA---DHGLRAESAAEAEWTRRTLAAQGI 97

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
           +  V+        + +   AR+AR A +           ++      DQ ETV  R+ R 
Sbjct: 98  SARVLRLDLP-GGSAVQERARQARLAALLGACAAEGLPFLLLGQHAGDQAETVLFRALRG 156

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 GLSG+         + I RP L      + + L  R +S   DPSN D RF RV
Sbjct: 157 SGA--TGLSGIAPRRAAAEAV-ILRPLLATPPIRLEALLAARGLSPLRDPSNADPRFARV 213

Query: 203 RVRRFVRDID 212
           R+R+ + D D
Sbjct: 214 RLRQALADAD 223


>gi|226363729|ref|YP_002781511.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4]
 gi|254789041|sp|C1BA63|TILS_RHOOB RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|226242218|dbj|BAH52566.1| tRNA(Ile)-lysidine synthase [Rhodococcus opacus B4]
          Length = 325

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 102/281 (36%), Gaps = 23/281 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L    +VR ++ +      + VA+SGG           ++ +  +       A+ VDH L
Sbjct: 10  LEVRHAVRHWIAAHAPDGDVAVALSGG-------ADSLALTAAAAVEARSAVALVVDHRL 62

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +  + D     +     L  A + V   +     GL AAAR+ARY  +           +
Sbjct: 63  QRGSADVADGAAARARTLGCASAEVLPVDVTGSGGLEAAARQARYEALD---AGRGTRPV 119

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  HT DDQ ETV +   R     G  + GM        +    RP L  RR   R    
Sbjct: 120 LLGHTLDDQAETVLLGLSRGSG--GRSIWGMS-----PYDSPWGRPLLGVRRAVTRQACT 172

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAML 237
           +  +   EDP N+   F RVR+R  V  +    L         +  + LR +     A+ 
Sbjct: 173 ELGLDPHEDPHNSSPDFVRVRLRTEVLPLLEDVLGGGVAGALARTGEHLREEGAVLDAVA 232

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
                 V +   I  +   L+    +   +LR      G +
Sbjct: 233 ADAEAKVVVDGEIDAALLALSAPP-VRRRVLRSWLLAAGAR 272


>gi|145596819|ref|YP_001161116.1| tRNA(Ile)-lysidine synthetase [Salinispora tropica CNB-440]
 gi|189035971|sp|A4XCT1|TILS_SALTO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|145306156|gb|ABP56738.1| tRNA(Ile)-lysidine synthetase [Salinispora tropica CNB-440]
          Length = 333

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 123/324 (37%), Gaps = 18/324 (5%)

Query: 5   PIESVRFFVRS----LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           P+ ++R  +R     L  P  +LVA SGG+     L    +              ++VDH
Sbjct: 7   PVAAIRRAIRHALIELPDPGPVLVACSGGA---DSLALAAATAFVAPRLGRSAGLVTVDH 63

Query: 61  CLRETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            L+E +      V+D      +    VV    S    G  AAAR+ARY  ++E A  + A
Sbjct: 64  GLQEGSAQRAAAVADWARATGLAPVEVVRVDVSGRPGGPEAAARQARYRALTEVAGGLGA 123

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++T HT DDQ ETV +   R    +G  L+GM         L + RP L   RE  R+
Sbjct: 124 AALLTGHTRDDQAETVLLALARGAGPRG--LAGMPARRWLGAAL-LLRPLLEVSREQTRA 180

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
                 +    DP N D  + R RVR  V    + AL   +        ++       + 
Sbjct: 181 ACTALGLDPWVDPHNADPAYARARVRAEVLPALVRALGPAVVDNLARTARLVAVDTAALD 240

Query: 240 KYLTVHMRSIIAIS-----QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
           +  +  +  +           +  +   +   +L   A   G + +   +R +  +   +
Sbjct: 241 EQASTALDGVRHPDGGLSVGGLAALVPAVRGRVLHAWARELGARPAALSHRHVGALEALV 300

Query: 295 KS--GKRGCVSIGRVVIDRRANFL 316
               G+      G + + RRA  L
Sbjct: 301 TGWRGQGAAHLPGGLRVLRRAGRL 324


>gi|239623968|ref|ZP_04666999.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521999|gb|EEQ61865.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 241

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVC 77
              I V VSGG DS+   +        R +  K +  A++VD  L      E   V ++C
Sbjct: 23  GDRIAVGVSGGKDSLA--LLYALHHLQRFYPRKYELCAVTVDLGL-GNMDLEP--VRELC 77

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               + ++V+  +  K       ++   +   + R   ++E  K +    I  AH  DD 
Sbjct: 78  GEFGVPYTVIPTEIGKVLFDIRKESNPCSLCAKMRKGALNEKVKELGCNKIAYAHHRDDV 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ M        +G   S    T L  ++L + RPFL     DI  F  +  +  C++
Sbjct: 138 IETMLMSLF----YEGRFYSFSPYTYLDRMDLTVIRPFLFVTEADIVGFKNKYQLPVCKN 193

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           P   D   +R  ++  ++++     +LK   F  +
Sbjct: 194 PCPMDGYTKRQYIKDLIKELQKDNPHLKDCMFHAI 228


>gi|218132480|ref|ZP_03461284.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992590|gb|EEC58592.1| hypothetical protein BACPEC_00339 [Bacteroides pectinophilus ATCC
           43243]
          Length = 247

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 83/217 (38%), Gaps = 18/217 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSD 75
               I V +SGG DS+ LL ALH +         +  A++V+  +     + + +  +S 
Sbjct: 22  SGDKIAVGISGGKDSLTLLYALHGLRRFYP-NNFEIEAVTVNAGI-----EGMDFSPISR 75

Query: 76  VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +C  L + ++V+         N + ++   A   + R    ++ A  +    I  AH  D
Sbjct: 76  LCDELDVNYTVIDTDIYDIVYNIRRESNPCALCAKLRKGAFNKKAAELGCNKIAYAHHKD 135

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET  M        +G   +    T L    L + RP +     D+  F  + N+   
Sbjct: 136 DVIETFMMSLL----LEGRVHTFSPVTYLERSGLTLIRPLIYVNEADVIGFRNKYNLPVV 191

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           ++    D    R   +  ++ ++        + F  +
Sbjct: 192 KNLCPADGETRREYAKNLIKSLNKDLPGTHDRIFTAI 228


>gi|309810838|ref|ZP_07704639.1| tRNA(Ile)-lysidine synthetase [Dermacoccus sp. Ellin185]
 gi|308435144|gb|EFP58975.1| tRNA(Ile)-lysidine synthetase [Dermacoccus sp. Ellin185]
          Length = 353

 Score =  126 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 90/247 (36%), Gaps = 14/247 (5%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           R F         ++  VSGG+DSM       ++  +     +    + VDH L+  + D 
Sbjct: 21  RTFSSDAAGERRVVAGVSGGADSM---ALAAALAFEAPKQGVAVDVVIVDHGLQAGSADV 77

Query: 70  VRYVSDVC-SRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                  C  +L  A     +V    ++    GL AAAR AR   + + A  + A   + 
Sbjct: 78  AERARRACVDQLGFADDDVRTVAVIVDADAPEGLEAAARAARRRALFDVADAVGAARAVL 137

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL----RCRREDIRSF 180
           AHT DDQ E V +   R    +   L+GM       L  ++  P +      RR D    
Sbjct: 138 AHTADDQAEQVLLGLMRGSGTR--ALAGMRADRARLLRPFLLGPEIVPGGPVRRVDTELA 195

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
                +    DP N D  F RVR R  +  ++       +++            A L+ +
Sbjct: 196 CEALGLEPWHDPHNDDPAFSRVRARHTLAALERELAAPTLRRSLFRTAAAAGRDADLLDR 255

Query: 241 YLTVHMR 247
                + 
Sbjct: 256 LADEALA 262


>gi|317471540|ref|ZP_07930890.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA]
 gi|316900988|gb|EFV22952.1| PP-loop family protein [Anaerostipes sp. 3_2_56FAA]
          Length = 244

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 17/227 (7%)

Query: 9   VRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           VR  V   + +     I V +SGG DS+ +L AL  +       K +   I+VD      
Sbjct: 10  VRRAVDDYQMIQEGDKIAVGISGGKDSLTMLYALAQLRIFYP-NKFEIHGITVDLGF--- 65

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINA 119
              ++  V  +C  L++ +++V  + +      + +T   +   + R   ++E  K +  
Sbjct: 66  GNFDISQVEKLCEELKVPYTIVKTEIADVVFERRKETNPCSLCAKMRKGALNEKIKELGC 125

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +  AH  DD +ET  M        +G        T L  ++L + RP +     D+  
Sbjct: 126 NKVAYAHHKDDLVETFLMSML----FEGRLHCFSPVTYLDRMDLKVIRPLMYMDEADVIG 181

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           F  + N+   + P   D   +R   +  ++ +D      K   F+ +
Sbjct: 182 FKNKMNLPVEKSPCPMDGYTKRQYAKETLKKLDEDHPGSKDHMFRAM 228


>gi|57641756|ref|YP_184234.1| PP family ATPase [Thermococcus kodakarensis KOD1]
 gi|57160080|dbj|BAD86010.1| ATPase, PP-loop superfamily [Thermococcus kodakarensis KOD1]
          Length = 323

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 86/239 (35%), Gaps = 28/239 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---R 63
           E+V+ + R +     I V VSGG DS+ L+  L  +   R     +  AI++D  +   R
Sbjct: 36  ETVKKY-RLIEKGERIAVGVSGGKDSVVLMHLLAKL---REKFPFELVAITIDEGIAGYR 91

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------------SKPQTGLMAAAREAR 106
             +   V        +L I H + S+K                     + G  +     R
Sbjct: 92  PPS---VEIAKRNAKKLGIEHRIYSFKEYIGFTLDETVEIMGSFEKGERVGACSYCGVWR 148

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             L++  A  + A  +   H  DD+++   M   R    + +G +G     ++   +   
Sbjct: 149 RWLLNYAAMDVGADKLAVGHNLDDEVQMFLMNILRGDIAR-LGRTGPYYEEIHPELVPRI 207

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
           +P      ++I  + +  NI              R  +R ++ +++      K +  + 
Sbjct: 208 KPLREIPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWINEMEEKHPGTKYQILRS 266


>gi|330444537|ref|YP_004377523.1| PP-loop type ATPase [Chlamydophila pecorum E58]
 gi|328807647|gb|AEB41820.1| PP-loop type ATPase [Chlamydophila pecorum E58]
          Length = 247

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S I    +    L     I+VA+SGG DS+ LL+ L ++ S R F ++   A+++     
Sbjct: 18  SLIRKALYTYSMLENHRKIIVALSGGKDSLSLLLMLKAI-SGRGFPELDLHAVNISGKYS 76

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A+    Y+  +C RL+I  + +      P+T    +  +AR  L+ + AK I AT I 
Sbjct: 77  CGAEVNTHYLIKICDRLQIPFTSL-VSPYAPETPECYSCSQARRRLLFQAAKEIGATAIA 135

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +      I+ F  +
Sbjct: 136 FGHHRDDLVQTTLMNLL--HKAEFSGMLPVLDMVHF--GITILRPLIFTPESLIKKFAKE 191

Query: 184 RN 185
             
Sbjct: 192 HG 193


>gi|240172424|ref|ZP_04751083.1| cell cycle protein MesJ [Mycobacterium kansasii ATCC 12478]
          Length = 353

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 83/260 (31%), Gaps = 23/260 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
              V +SGG DS+ L      +           +A+ VDH L+  +             L
Sbjct: 57  RWCVGLSGGPDSLALTAVAAQLRPT--------TALIVDHGLQLGSAAVAETARAQAISL 108

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
                    +    Q G       A  A      +      ++  HT DDQ ETV +   
Sbjct: 109 G----CDDAQVICVQVGTAGGLEAAARAARYAALQAHRDGPVLLGHTLDDQAETVLLGLG 164

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    +      +     YD      RP L  RR+  ++   +  ++  +DP NTD RF 
Sbjct: 165 RGSGPRS-----IAGMRPYDP--PWCRPLLGVRRDVTQAACRELGLTAWQDPHNTDRRFT 217

Query: 201 RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK----YLTVHMRSIIAISQDI 256
           R R+R+ V  +    L   + +              LI       LT         +  +
Sbjct: 218 RTRLRQEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAARALTAAAAGSGLDTAAL 277

Query: 257 LNIDSTLLFYLLRVSAAICG 276
             +   +   ++R      G
Sbjct: 278 TALPGPVRRRVIRRWLLAGG 297


>gi|46446494|ref|YP_007859.1| hypothetical protein pc0860 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400135|emb|CAF23584.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 246

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 80/219 (36%), Gaps = 24/219 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + I VA+SGG DS+ LL  L ++ S R F  ++  AI V       A     Y+  +C  
Sbjct: 35  SKIAVALSGGKDSLTLLYLLKAI-SGRGFPNLEIHAIHVSGEFSCGAGVNEDYLRAICQE 93

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           + +  +       K +     +    R  L+ E AK++  T I   H  DD  +TV M  
Sbjct: 94  IGVQLTT-RISTQKLEKLECYSCSRERRRLLFEAAKSLGITTIAFGHHRDDHTQTVLMNL 152

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                  G     +    + +  + I RP +    ++IR+F  Q+              F
Sbjct: 153 LHKAEFAG----NLPKIHMQEYGVTIIRPLIYIAEKNIRTFAQQQG-------------F 195

Query: 200 ERVRVR-----RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
            R+  R       +R      L      F   R  +  A
Sbjct: 196 ARIMCRCPVGQNSMRKQVDQLLIEIETLFPHARENIAKA 234


>gi|312194202|ref|YP_004014263.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EuI1c]
 gi|311225538|gb|ADP78393.1| hypoxanthine phosphoribosyltransferase [Frankia sp. EuI1c]
          Length = 603

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 140/396 (35%), Gaps = 53/396 (13%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR  V  L   A +LVA SGG DS   L    +         ++   ++VDH     + 
Sbjct: 29  AVRHAVADLPPGALVLVACSGGPDS---LALAAATAFVAPRRALRAGLLTVDHGWDGASD 85

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                V      LR+    +   +S        AAR+AR A ++  A+ + A  ++  HT
Sbjct: 86  QRAESVVAQGRALRLDPVELLVAHSARS---EGAARDARRAALAAAAERLGAAALLLGHT 142

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ETV +R  R    + +G     D +L    L         R+E  R+      + 
Sbjct: 143 LDDQAETVLLRLARGAGARSLGAMSPRDGLLRRPLL-------GLRKEQTRAACRAEGLD 195

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV--- 244
             EDP+N D  F R RVR  +       L   + +       +  A A  +         
Sbjct: 196 VWEDPTNADAAFARARVRHALLPALEEQLGPGIAESLSRSADLLRADAEALDALTDDAYA 255

Query: 245 -------HMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYR---SMERVMLF 293
                       + ++ + L ++ S L   +LR +A   G   S        +ME ++  
Sbjct: 256 QATAGSPAGAGSVELAVEALGSLPSALRTRVLRRAALALGASASALRAEHVWAMEELVTR 315

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
            + G++       V   RR + +            +  P ET              S  +
Sbjct: 316 WR-GQQPVPLPSGVTARRRGDRI-----------SVAGPGETR-------------SGRR 350

Query: 354 IGPQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPL 389
                   A  P+G  P   +R  ++ P  E G P+
Sbjct: 351 GTADGGDAASGPTGPRPS-PRRPDAARPDAEEGMPV 385


>gi|269796486|ref|YP_003315941.1| tRNA(Ile)-lysidine synthetase [Sanguibacter keddieii DSM 10542]
 gi|269098671|gb|ACZ23107.1| tRNA(Ile)-lysidine synthetase [Sanguibacter keddieii DSM 10542]
          Length = 344

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/279 (23%), Positives = 107/279 (38%), Gaps = 30/279 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A +LVA SGG+DS+ L     +   +     ++  A+ VDH ++  + +     +  C
Sbjct: 27  PGALVLVACSGGADSLALA---ATTAFEAPRLGLRAGAVVVDHQVQTGSAEVAAEAAGRC 83

Query: 78  SRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             L +   VV            G  AAAR ARYA +   A    A +++  HT DDQ ET
Sbjct: 84  RDLGLGPVVVRTVDVPTGPGSGGPEAAARHARYAALEAAADAEGAEVVLLGHTADDQAET 143

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           V +   R    +   L+GM D +         RP L  RR +  +    + + W  DP+N
Sbjct: 144 VLLGLARGSGAR--SLAGMRDAV-----GRWRRPLLGLRRTETEAVCAAQGLGWWVDPTN 196

Query: 195 TDD---RFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
                    R RVR  V  +         + AL     +  +    +    A L+     
Sbjct: 197 AGTSPGAPLRSRVRASVLPVLDDVLGPGVVEALARTADQLDEDDTALGTLAADLLESARR 256

Query: 244 VHMRSII---AISQDILNID---STLLFYLLRVSAAICG 276
               +     A+  D+  ++     +    LR++A   G
Sbjct: 257 AAGPADGDGRAVRLDVAAVEQAVPAVRRRCLRLAALAAG 295


>gi|282890463|ref|ZP_06298986.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499460|gb|EFB41756.1| hypothetical protein pah_c022o027 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 247

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 89/235 (37%), Gaps = 24/235 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    F  + +     I +A+SGG DS+ LL  L ++ S R F   +  A+ V     
Sbjct: 20  SMVRKALFEFQMVSDSPKIAIALSGGKDSLALLFLLKAI-SGRGFPPFELFAVHVHGAFS 78

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A   + Y+  +C+RL I   ++       ++         R  L+ E AK++ AT I 
Sbjct: 79  CGAGVNLDYLRAICTRLEIPF-LMRESTQTLESLECYGCSRERRRLLFEAAKSVGATTIA 137

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD  +T+ M        K    + +    + +  + I RP +    ++I +F  Q
Sbjct: 138 FGHHRDDSAQTLLMNLL----HKAEFAANLPKLHMREYGVTIIRPLIYVAEKEISTFAEQ 193

Query: 184 RNISWCEDPSNTDDRFERVRVR-----RFVRDIDLHALYLKMKKFQDLRVKVNNA 233
                          F+R+  R       +R      L    + F + R  +  A
Sbjct: 194 HG-------------FKRITCRCPVGQNSMRRQVDQLLTQLEELFPNARENIAKA 235


>gi|118575266|ref|YP_875009.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A]
 gi|118193787|gb|ABK76705.1| ATPase of the PP-loop superfamily [Cenarchaeum symbiosum A]
          Length = 269

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 76/222 (34%), Gaps = 20/222 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + V VSGG DS+ LL  L  +     F   +  A+++D  +     + +  V + C
Sbjct: 4   RGDRVAVGVSGGKDSLVLLHILEQMSQKWGF---ELEAVTIDEGIPGYRDEALSIVEEYC 60

Query: 78  SRLRIAHSVVSWKN-------------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
             L +AH V ++K+              +      +     R   +        A ++ T
Sbjct: 61  GSLGVAHRVYAYKDLFDMTLDEALNMRGENSQTSCSICGTLRRRAMDHAIHDTGADVLAT 120

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DD L+T  +       ++   +     +          +PF      +I  +    
Sbjct: 121 AHNLDDTLQTFLINMISGDTDRIAWMDPDTSSNELRK----IKPFCEIYESEIVFYAFAN 176

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            I +  +     D   R  +R F+  ++      K   ++ +
Sbjct: 177 KIPFQAESCPHMDEGIRTELRIFLNSLEESHSGAKNSLYRSV 218


>gi|223998234|ref|XP_002288790.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975898|gb|EED94226.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 613

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 107/330 (32%), Gaps = 58/330 (17%)

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSW----------KNSKPQTGLMAAAREARYALISEH 113
           E++  +  +V  +C    I     SW          K+   ++     AR  R   +   
Sbjct: 149 ESSDRDEGFVKALCQENGIPIHCYSWSDRNNTSANRKDDSSESFTQDVARTWRKQTLGRL 208

Query: 114 AKT--------------INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT--- 156
                                 I+TAH  DD  ET+ ++  R        L GM      
Sbjct: 209 LLDLVVTPNHYRGTDTSERWGAILTAHHRDDVDETILLKLLRGSHL--TNLWGMDARSDG 266

Query: 157 ----ILYDLN-----------LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                L+D +            + ++P L  R+ D+  +L  ++I W ED SN  ++++R
Sbjct: 267 FDLLALHDNDTVSKSPASTFTGYFAKPMLSIRKNDVLDYLNSQSIEWREDESNNSNKYKR 326

Query: 202 VRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
            ++R  V  +         AL  +    ++    ++  +     KYL + M S       
Sbjct: 327 NKIRNEVMPLLKELAGGEDALQKRFSNLEEQSRAISQHLLNRAEKYL-LDMPSNSVFHLT 385

Query: 256 ILN---IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL---KSGKRGCVSIGRVV- 308
           IL+   +        L +             Y  M+R+   L       +  + +G    
Sbjct: 386 ILDSTILFDLEREEALHLWLTRVTDNELQISYEQMKRIRHQLNEYPERLQWTIDVGNSWR 445

Query: 309 IDRRANFLWITRAVRNLPTLILYPEETTVW 338
           + R  + L ++    +        +    W
Sbjct: 446 VSRNGDILVVSNRHEDDNIQTTEKDNQIHW 475


>gi|291556343|emb|CBL33460.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium siraeum V10Sc8a]
          Length = 241

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 19/230 (8%)

Query: 9   VRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           +R  V+          I V VSGG DS+ LL  L  +     F     +A+++D      
Sbjct: 8   IRKAVQDFDLIQKGDRIAVGVSGGKDSLVLLAGLAQMRRFAEF-DYDITAVTIDPGFNGV 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTI 117
               D    V+ +C +L +  S+V  +      + + +    +     R   + + AK  
Sbjct: 67  PNNYD---AVARLCEKLDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAA 123

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H  DD +ET  M        +G        T L   ++ + RP +      +
Sbjct: 124 GCNKLALGHNNDDVIETFIMNLF----NEGRIGCFSPKTHLDRKDITVIRPLVLAPESQV 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            S   + N+   +     D    R + + F+RD++      K++ F  LR
Sbjct: 180 LSACNRNNLEIVKSVCPADKTTTRQKTKEFLRDMEHKDKGFKLRMFTALR 229


>gi|212224843|ref|YP_002308079.1| ATPase [Thermococcus onnurineus NA1]
 gi|212009800|gb|ACJ17182.1| ATPase [Thermococcus onnurineus NA1]
          Length = 323

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 84/244 (34%), Gaps = 31/244 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   ++  R   +       I V VSGG DS+ LL  L  +     F   +  A+++D  
Sbjct: 34  FKETVKKYRLVEK----GERIAVGVSGGKDSVVLLHLLAKLQKKFPF---ELVAVTIDEG 86

Query: 62  L---RETAKDEVRYVSDVCSRLRIAHSVVSWK-----------------NSKPQTGLMAA 101
           +   R  +   V        +L I H + S+K                     + G  + 
Sbjct: 87  IAGYRPPS---VEIARRNAEKLGIEHHIYSFKEYIGFTLDETVEIMGSFEKGERVGACSY 143

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
               R  L++  AK + A  +   H  DD+++   M   R    + +G +G     ++  
Sbjct: 144 CGVWRRWLLNHAAKEVEADKLAVGHNLDDEVQMFIMNILRGDIAR-LGRTGPYYEEIHPE 202

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
            +   +P      ++I  + +   I              R  +R ++ +++      K +
Sbjct: 203 LVPRIKPLREIPEKEIILYAVLNEIEVDLSECPYAVEAFRAEIRDWINEMEEKHPGTKYQ 262

Query: 222 KFQD 225
             + 
Sbjct: 263 ILRS 266


>gi|240102078|ref|YP_002958386.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
 gi|239909631|gb|ACS32522.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
          Length = 325

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 28/239 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---R 63
           E+V+ + R +     I V VSGG DS+ L+  L  +   R     +  AI++D  +   R
Sbjct: 38  ETVKKY-RLIEKGERIAVGVSGGKDSVVLMHLLAKL---REKFPFELVAITIDEGIAGYR 93

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK-----------------NSKPQTGLMAAAREAR 106
             +   V        +L I H + S+K                     + G  +     R
Sbjct: 94  PKS---VEIAKRNARKLGIEHRIYSFKEYIGFTLDETVGIMGSFERGERVGACSYCGVWR 150

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             L++  AK + A  +   H  DD+++   M   R    + +G +G     ++   +   
Sbjct: 151 RWLLNYAAKDVGADKLAVGHNLDDEVQMFIMNILRGDIAR-LGRTGPYYEEIHPELVPRI 209

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
           +P      ++I  + +  NI              R  +R ++ +++      K +  + 
Sbjct: 210 KPLREIPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQILRS 268


>gi|172041383|ref|YP_001801097.1| cell cycle protein MesJ [Corynebacterium urealyticum DSM 7109]
 gi|171852687|emb|CAQ05663.1| cell cycle protein MesJ [Corynebacterium urealyticum DSM 7109]
          Length = 494

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 89/267 (33%), Gaps = 22/267 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    + + VSGG+DS+ L      + + +      F A+ VDH L+E + +     +  
Sbjct: 102 LAEGPVYLGVSGGADSLALAYTAAGI-AKKDLPGASFRALVVDHQLQEGSAEVAATAAQN 160

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C  + I   V++        G  A    AR A             ++ AHT  D  E + 
Sbjct: 161 CEEIGIPAQVLTIDVP---GGPGADEAAAREARYRALGAAAAGRPLLVAHTASDDAEGLL 217

Query: 137 MRSQRDYAE------------------KGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           +   R                       G   +G     +     W+ RP L   RED  
Sbjct: 218 LGLARGSGTGALAGLRPITTATHQRSDNGEQQAGNEHPAIAAGAGWLGRPLLDSTREDTE 277

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           +   +  +S+  DP N   RF R RVR+ +  +    L   +        ++    +  +
Sbjct: 278 ATCHRAGLSFWSDPHNASPRFRRSRVRQELLPLLEEILGPGVADSLTRTARLLREDSDYL 337

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLF 265
                     +IA +    + +     
Sbjct: 338 EAAAHAEYTRLIAEAGSHGHAEGHEQA 364


>gi|155371675|ref|YP_001427209.1| hypothetical protein ATCV1_Z728L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124995|gb|ABT16862.1| hypothetical protein ATCV1_Z728L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 504

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 23/277 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++ V   ++  V P+ I +++SGG DSM L   L  +   R+    +     V++  R  
Sbjct: 190 VKEVETALKK-VSPSEITMSISGGVDSMTLFHILSGL---RNVYGYELRVAMVNYANRAC 245

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--------TGLMAAAREARYALISEHAKTI 117
           A DE  +V+D  +      ++        +        T      R  RY +    A+  
Sbjct: 246 AYDEETFVADWVNWNGHVLNIRRIDEISRKPCVDMGMRTTYETFTRNVRYGVYKTIARD- 304

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H  DD LE ++         K   LSGM DT++    +   RP L   ++DI
Sbjct: 305 --AYVAMGHNKDDVLENIFQNVA--METKYENLSGM-DTVVEQDGIKFFRPLLGVAKDDI 359

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID---LHALYLKMKKFQDLRVKVNNAV 234
             +    NI +  + +     F R ++R  +              M K +D   ++++A+
Sbjct: 360 VEYARSHNIPFLPNSTP--PHFMRGQIRNTIVPTMNAWNDRFIPGMFKLKDTVAELSDAM 417

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVS 271
            +L   ++    ++   +    + + +      L+  
Sbjct: 418 DVLTDGFVKSFEQNSALVEPKYVGMKTMFWRSALKKL 454


>gi|83772767|dbj|BAE62895.1| unnamed protein product [Aspergillus oryzae]
          Length = 586

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 67/247 (27%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC--------------- 77
           M L   L           I  +A  VDH  RE +  E   VS                  
Sbjct: 1   MALAY-LSKQWEKSRPNDISVTAFVVDHKAREESTREANTVSQWLQDIGIYASPYTLAFN 59

Query: 78  ------SRLRIAHSVV------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  +L +   ++      S K+    T     AR  R+  + +  +      ++  
Sbjct: 60  TKQMLTRKLGVKSEILELTWPESTKSPSKVTAFETHARRLRFQALGKACRDRQIEALLMG 119

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD------------------------- 160
           H  DD +ET   R       KG GL+G+ +                              
Sbjct: 120 HHQDDTVETTLWRLC--TGAKGAGLAGIPEVTRIPECHGIYGVSESGSSYTIPSRPQRSS 177

Query: 161 -----------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFV 208
                        + I RP L   +  + +   + NI +  DP+N D     R  +R  +
Sbjct: 178 AQARNDTTVSTGGILICRPLLPFPKSSLLATCHENNIPYVSDPTNFDPTLTPRNAIRSLL 237

Query: 209 RDIDLHA 215
            +  L  
Sbjct: 238 AEDKLPK 244


>gi|226327027|ref|ZP_03802545.1| hypothetical protein PROPEN_00888 [Proteus penneri ATCC 35198]
 gi|225204245|gb|EEG86599.1| hypothetical protein PROPEN_00888 [Proteus penneri ATCC 35198]
          Length = 131

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
             SGG DS  LL  L  +  +     ++ +AI + H L   A D + +    C + R+  
Sbjct: 2   GFSGGVDSTVLLQGLVRLRDEFQLP-LELTAIYIHHGLNIKADDWLAHCKQCCQQWRVNF 60

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
                     + GL   AREARY     + +     +++TA   DDQ ET ++
Sbjct: 61  ISEKVNVDPKEGGLENGAREARYQAFRRYLQPQQ--VLVTAQHQDDQAETFFI 111


>gi|315446257|ref|YP_004079136.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1]
 gi|315264560|gb|ADU01302.1| tRNA(Ile)-lysidine synthetase [Mycobacterium sp. Spyr1]
          Length = 322

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 115/322 (35%), Gaps = 27/322 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++  F R+        VA+SGG DS+ L     ++           +A+ VDH L+  + 
Sbjct: 13  ALVDFARTHRVAPPWCVALSGGPDSLALTAVAATLHPT--------TALIVDHRLQPGSA 64

Query: 68  DEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           D      +    L  +A  V+      P  G  AAAR ARY  + +     +   ++  H
Sbjct: 65  DVAAAAREQALALGCVAAQVLPVDVGSPG-GPEAAARTARYRALDDAR---DGKPVLLGH 120

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R    +      +     YD  L   RP L  RR+       +  +
Sbjct: 121 TLDDQAETVLLGLGRGSGPRS-----IAGMRPYD--LPWGRPLLGVRRDTTHRACAELGL 173

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
           +  +DP N D R+ RVR+R  V  +    L   + +              ++       +
Sbjct: 174 NPWQDPHNLDPRYTRVRLRTEVLPLLEDVLGGGVAEALARTAAALREDTDVLDALAAEAV 233

Query: 247 R-SIIAISQDIL-NIDSTLLFYLLRVSAAICGGQ--ISLPGYRSMERVMLFLKSGK---R 299
                 +    L ++ + L    +R      G +             +  +   G     
Sbjct: 234 APGDADLDVTALADLPAALRRRAVRGWLLAAGARDLTDKHLRAVDALITDWHGQGGVAVP 293

Query: 300 GCVSIGRVVIDRRANFLWITRA 321
           G ++  R+ + R  N L + R 
Sbjct: 294 GGLTRERLFVARNRNRLGMYRE 315


>gi|88607318|ref|YP_505641.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ]
 gi|88607616|ref|YP_505613.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ]
 gi|88598381|gb|ABD43851.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ]
 gi|88598679|gb|ABD44149.1| putative cell cycle protein MesJ [Anaplasma phagocytophilum HZ]
          Length = 269

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 11/209 (5%)

Query: 147 GMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRV 204
           G G+ G+          ++ I RP L   R +I+ + +Q    W EDPSN+D ++ R   
Sbjct: 3   GSGIDGLAGIRERSVIGDVTIIRPLLDFTRREIQEYAIQHQQPWIEDPSNSDPKYRRTFY 62

Query: 205 RRFVRD-----IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL-N 258
           R F+ +     I +  L       Q     + + V   +   L       + I  D+  N
Sbjct: 63  RNFINNCKHPEILISRLSSTALHMQRSLSCILHYVQNALDSCLEFTPFGYVVIKHDVFRN 122

Query: 259 IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC-VSIGRVVI-DRRANFL 316
           +   +   L  +     G +   P +      +  ++S       ++   +I     + +
Sbjct: 123 LQDEIASRLFLLLIMTIGNKPLKPRFSKFSSALSKVRSTAGFASFTLHGCMILKTCDSNI 182

Query: 317 WITRAVRNL-PTLILYPEETTVWDGRYQF 344
            + R V ++ P   L+ E   +WD R++ 
Sbjct: 183 IVAREVSSIVPKTYLHGETRLLWDSRFEL 211


>gi|167749764|ref|ZP_02421891.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702]
 gi|167657247|gb|EDS01377.1| hypothetical protein EUBSIR_00731 [Eubacterium siraeum DSM 15702]
          Length = 241

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 19/230 (8%)

Query: 9   VRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           +R  V+          I V VSGG DS+ LL  L  +     F     +A+++D      
Sbjct: 8   IRKAVQDFDLIQKGDKIAVGVSGGKDSLVLLAGLAQMRRFAEF-DYDITAVTIDPGFNGV 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTI 117
               D    V+ +C +L +  S+V  +      + + +    +     R   + + AK  
Sbjct: 67  PNNYD---AVARLCEKLDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAA 123

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H  DD +ET  M        +G        T L   ++ + RP +      +
Sbjct: 124 GCNKLALGHNNDDVIETFIMNLF----NEGRIGCFSPKTHLDRKDITVIRPLVLAPESQV 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            S   + N+   +     D    R + + F+RD++      K++ F  LR
Sbjct: 180 LSACNRNNLEIVKSVCPADKTTSRQKTKEFLRDMEHKDKGFKLRMFTALR 229


>gi|169608297|ref|XP_001797568.1| hypothetical protein SNOG_07219 [Phaeosphaeria nodorum SN15]
 gi|160701613|gb|EAT85870.2| hypothetical protein SNOG_07219 [Phaeosphaeria nodorum SN15]
          Length = 626

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 87/255 (34%), Gaps = 36/255 (14%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS-RLRIAHSVVSWKN 91
           M L   L++          +     VDH +R  + +E  +V++    +  +  S+++   
Sbjct: 1   MALAS-LYARAQKADASLPQGHGFIVDHKVRPESTEEAAWVAEQLRSKFGMKSSILTLTW 59

Query: 92  SKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146
            +             AR  RY  + +  +  +   +M AH  DDQ ETV MR   +    
Sbjct: 60  PENFDMSDFKRFETEARTRRYQALGQACRREDIRALMVAHHGDDQAETVLMRLANNRLRT 119

Query: 147 GM-------------GLSGMCDT--------------ILYDLNLWISRPFLRCRREDIRS 179
           G+             G+ G+  +               +    + I RP L   +  + +
Sbjct: 120 GLKGMQSVEWIPECEGIYGVHHSGDYQEPKVTNKIPFPIEQGGIQILRPLLAMEKSRLIA 179

Query: 180 FLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
              +    W ED SN       R  +R   +  +L    L +     L +++   V    
Sbjct: 180 TCQEHGTEWAEDKSNHLRTLTSRNAIRHIYKAHELPK-ALSIPSLVALSLRMQERVNKHQ 238

Query: 239 PKYLTVHMRSIIAIS 253
                ++ + ++ + 
Sbjct: 239 AYARKLYDQCLMKLD 253


>gi|296273321|ref|YP_003655952.1| PP-loop domain-containing protein [Arcobacter nitrofigilis DSM
           7299]
 gi|296097495|gb|ADG93445.1| PP-loop domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 250

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 17/181 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +LV  SGG DS  L+ AL+ +     F   +F A++V + + E     V ++S  C+
Sbjct: 25  GDRVLVGFSGGKDSTTLIHALNHIKKVTPF-DFEFKAVTVTYGMGEQ----VEFLSKHCA 79

Query: 79  RLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  I H ++       S +  +  +   +     R   +   A+      +   H  DD 
Sbjct: 80  KHGIEHEIIDTEIFELSKEKIRKNSSFCSFFSRMRRGYLYSTAQEQGYNKLALGHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + A     L  M      +  L + RP + CR   +R+F     IS   D
Sbjct: 140 MESFFMNFLYNGA-----LRSMPPRYKAENGLEVIRPLIFCRERQLRAFAQTNEISVIGD 194

Query: 192 P 192
            
Sbjct: 195 E 195


>gi|262203875|ref|YP_003275083.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247]
 gi|262087222|gb|ACY23190.1| tRNA(Ile)-lysidine synthetase [Gordonia bronchialis DSM 43247]
          Length = 317

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 104/274 (37%), Gaps = 30/274 (10%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           F    L    H+ V +SGG DS+ L  A            ++ +A+ VDH L+  + D  
Sbjct: 14  FAAEYLPDAEHVCVGLSGGPDSLALTAAAVR-------AGLRVTALVVDHGLQANSADVA 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
              +     L  A  ++  +  +   GL AAAR ARY+ +       + + ++  HT DD
Sbjct: 67  STAAATARALGAAAVILPVRVGRDG-GLEAAARAARYSALDAAR---DGSPVLLGHTMDD 122

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ETV +   R    +   ++GM             RP L  RR    +   +  ++   
Sbjct: 123 QAETVLLGLARGSGAR--SIAGMRTWTPPWG-----RPLLGVRRTQTAAMCAELGLTPYA 175

Query: 191 DPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           DP N D RF RVRVR  V  +         + AL       +     ++   A L    +
Sbjct: 176 DPHNRDPRFTRVRVRTDVLPLLDDVLNGGVVEALARTAASLRADNDALDGLAADLGAGAV 235

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
                 I  +++      + +   ++R      G
Sbjct: 236 VDAGLEIAVLAE----APAAVRTRVIRRWLLDVG 265


>gi|299753124|ref|XP_001833078.2| tRNA(Ile)-lysidine synthetase [Coprinopsis cinerea okayama7#130]
 gi|298410154|gb|EAU88767.2| tRNA(Ile)-lysidine synthetase [Coprinopsis cinerea okayama7#130]
          Length = 466

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 114/340 (33%), Gaps = 55/340 (16%)

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIM 123
             + S+  ++L + H        +P             AR ARY L+ +   +  +  + 
Sbjct: 2   ATHCSNFAAKLGLDHITSKILWGQPGFPPRPTESFERDARNARYDLLYKAMLSSGSNTLA 61

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----------------DLNLWISR 167
             H  DDQ+ET  MR         +G  GM     +                 + +W+ R
Sbjct: 62  LGHHLDDQVETSLMRL--GKGSTLLGARGMRPIRRWGMSEVPKWDFGQRDLQGMRMWMIR 119

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRD-------------IDL 213
           P L+  ++ I +      + +  D +N       R  +R  + +               L
Sbjct: 120 PLLQVGKDRILATCEANGLEYVTDKTNFQPDITIRNAIRHTLENNGDTSAVLEKRIKEQL 179

Query: 214 HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDIL---NIDSTLLFYLLR 269
           H +   + K  +L + +++ +       L +  +   I    D L   +   +    LL 
Sbjct: 180 HEIDEALSKNHELGLNLSSGLERARGAVLRISSLSGSIHAKVDKLIEQSCRPSPPGTLLL 239

Query: 270 VSAAICGGQISLPGYRSM-ERVMLFLKSGKRGCVSIGRV----VIDRRANFLWITRAVRN 324
             +A+    I L   +++ ERV+ ++     G +          +DR  N LW       
Sbjct: 240 SPSALQSETIDLLARKALVERVLRYVSPEPWGSLRAQSHSRSSQVDRIVNILWGPMNRNM 299

Query: 325 LPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADV 364
            P          VW       NL DS   I P++    D+
Sbjct: 300 AP---FTAGSGVVW----TPVNL-DSSGDIKPRTGTGTDL 331


>gi|308801591|ref|XP_003078109.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
 gi|116056560|emb|CAL52849.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
          Length = 1313

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 16/194 (8%)

Query: 22   ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            I V++SGG DSM L   L                + +D+  R  + +E  +V D   R  
Sbjct: 863  IAVSLSGGVDSMVLAYILK-------HQGYDVVTLHIDYKNRPESTEEADFVDDWSVRHG 915

Query: 82   IAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            +     +    +    P+      +R+ RY    +  +      ++  H   D  E +  
Sbjct: 916  MKFERCTVDAIRRGVTPREQYEIESRKIRYGFYKKSGQKHGFPAVLLGHHHGDVQENIIT 975

Query: 138  RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
               R      + ++GM    + +  + I RP L   + D+  F     + +  D + T  
Sbjct: 976  NLMRGANL--LSVNGMDKRGVVE-GVRIWRPMLPHNKVDVLDFAHTYGVPYFLDSTPTWS 1032

Query: 198  RFERVRVRRFVRDI 211
               R ++R  +  +
Sbjct: 1033 --TRGKLRNQLVPL 1044


>gi|18978130|ref|NP_579487.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18893931|gb|AAL81882.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 319

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 83/227 (36%), Gaps = 19/227 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     + VAVSGG DS+ L+  L  +   R     +  AI++D  ++      V   
Sbjct: 42  RMIKRGEKVGVAVSGGKDSVVLMHILAKL---RKKFPFELVAITIDEGIKGYRDKSVEVA 98

Query: 74  SDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTIN 118
                 L + H +  +K+                + + G  +     R  L+++ A+ + 
Sbjct: 99  RKNAELLGVEHHIYRFKDFIGFTLDETVEIMGPREERVGACSYCGVWRRWLLNKAAEELG 158

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +      DD+++   M   R    + +G +G    ++++  +   +P      ++I 
Sbjct: 159 VDKLALGLNLDDEVQVFLMNLMRGDVAR-LGRTGPYYEVIHEGLVPRIKPLREVPEKEIV 217

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            + +  NI              R  +R ++ +++      K +  + 
Sbjct: 218 LYAVLNNIEVDLSECPYATEAFRAEIRDWLNEMEEKHPGTKYQLLRS 264


>gi|331270424|ref|YP_004396916.1| hypothetical protein CbC4_2254 [Clostridium botulinum BKT015925]
 gi|329126974|gb|AEB76919.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
          Length = 239

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 15/218 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L++     S       AI++D      A  +   +  
Sbjct: 18  IQAGDKIAVGLSGGKDSITLLYLLNAY-KRFSPEPFNLIAITLD----PGAGADFSEMIH 72

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +C  L + + +   +      + + ++   +     R   +++HAK +    I   H  +
Sbjct: 73  ICKELNVPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKIALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G   + + DT L   +L I RP +    ++I++F+   NI   
Sbjct: 133 DAIETLLMSMF----YEGRINTFLPDTYLSRADLHIIRPMVYIDEQNIKTFIKNSNIPIV 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           E+P   +   +R  ++     ++     LK      L 
Sbjct: 189 ENPCPANGFTKREYMKNLTYSLEKDIPGLKNNLLNSLS 226


>gi|282164695|ref|YP_003357080.1| hypothetical protein MCP_2025 [Methanocella paludicola SANAE]
 gi|282157009|dbj|BAI62097.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 310

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 24/221 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+      R +V   H+ VA+SGG DS   L  L    S R    IKF+AI++D  + 
Sbjct: 32  RKIKKRMRQDRMVVPGDHVAVAMSGGKDSAVTLSILFETFSMR--PDIKFTAITIDEGID 89

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISE 112
                 +  V ++C +L + H VVS++             + +          R  L++ 
Sbjct: 90  GYRNFSIPRVKELCDKLGVPHIVVSFQEEVGCTLDEMLTHERKEASCTYCGVFRRTLLNT 149

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+ I A  + T H  DD  +TV +       E+   L+ +  +   +  +   +P +  
Sbjct: 150 TARNIGANKLATGHNLDDDAQTVLLNVMNGDTER---LARLRPSRPQEGLIPRIKPLMDV 206

Query: 173 RREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDI 211
              ++  +   + + +   E P      + R  +R  ++D+
Sbjct: 207 PEREVALYAFLKGLPFHMGECP------YARESLRGEIKDM 241


>gi|255527643|ref|ZP_05394503.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|255508656|gb|EET85036.1| PP-loop domain protein [Clostridium carboxidivorans P7]
          Length = 127

 Score =  123 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 9/124 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  + ++++  + R       ++VAVSGG DSM LL  L+S+   R    I+  A  V+H
Sbjct: 1   MIETVLKTINRY-RMFNKGDKVIVAVSGGPDSMSLLHILYSL---RKQLNIELCAAHVNH 56

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAK 115
           CLR   +  +  YV + C +L I     S   +K          +A R ARY   ++  K
Sbjct: 57  CLRGNESDKDEEYVKEFCEKLNIEFRSKSVDINKIMKMQNISCESAGRNARYDFFNDLKK 116

Query: 116 TINA 119
            I  
Sbjct: 117 EIKC 120


>gi|254173299|ref|ZP_04879972.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
 gi|214032708|gb|EEB73537.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
          Length = 325

 Score =  123 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 28/239 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---R 63
           E+V+ + R +     I V VSGG DS+ L+  L  +   R     +  AI++D  +   R
Sbjct: 38  ETVKKY-RLIEKGERIAVGVSGGKDSVVLMHLLAKL---REKFPFELVAITIDEGIAGYR 93

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------------SKPQTGLMAAAREAR 106
             +   V        +L I H + S+K                     + G  +     R
Sbjct: 94  PPS---VEIAKRNAKKLGIEHRIYSFKEYIGFTLDETVEIMGSFEKGERVGACSYCGVWR 150

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             L++  AK + A  +   H  DD+++   M   R    + +G +G     ++   +   
Sbjct: 151 RWLLNYAAKDVGADKLAVGHNLDDEVQMFIMNILRGDIAR-LGRTGPYYEEIHPELVPRI 209

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
           +P      ++I  + +  NI              R  +R ++ +++      K +  + 
Sbjct: 210 KPLREIPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQILRS 268


>gi|14520709|ref|NP_126184.1| hypothetical protein PAB2029 [Pyrococcus abyssi GE5]
 gi|5457925|emb|CAB49415.1| Predicted ATPase of the PP-loop superfamily [Pyrococcus abyssi GE5]
          Length = 323

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 86/240 (35%), Gaps = 19/240 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S ++      R +     I VAVSGG DS+ LL  L  +   R     +  AI++D 
Sbjct: 29  MVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKL---RKRFPFEIVAITIDE 85

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREA 105
            ++      V         L + H +  +K+                  + G  +     
Sbjct: 86  GIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVW 145

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R  L+++ A+ +    +      DD+++   M   R    + +G +G    ++++  +  
Sbjct: 146 RRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVAR-LGRTGPYYEVIHEGLVPR 204

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +P      ++I  + +  NI              R  +R ++ +++      K +  + 
Sbjct: 205 IKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEERHPGTKYQLLRS 264


>gi|304436546|ref|ZP_07396517.1| ExsB family protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370460|gb|EFM24114.1| ExsB family protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 259

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 82/233 (35%), Gaps = 17/233 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   + +V  F   +    HIL+ VSGG DS+ L  AL  +L +R       +A +++  
Sbjct: 10  FSKLMRAVVEF-ELIDNGDHILIGVSGGKDSIFLTYALA-ILRERLKKDFTIAAFTIN-- 65

Query: 62  LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114
                 D  +   ++  C  L + + VV          + +          R   ++ +A
Sbjct: 66  --PQFDDPFDTDAIAAFCKSLGVPYEVVDVDIAGAIVEQEEKSPCFTCAFFRRGAVNRYA 123

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  +   +  AH  DD +ET  M         G   +    T L    + + RP +  R 
Sbjct: 124 KEHHMNKVAYAHHHDDAVETFLMSLF----YSGQLNTFRPKTYLDKTGITVIRPLVYFRE 179

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           ++I   +     +    P   +    R  V+  +  +      L       +R
Sbjct: 180 QEIIDAIPLHGFTPIPSPCPHNGNTTRQAVKELIAHLSAENPNLYNHLAAGMR 232


>gi|253681114|ref|ZP_04861917.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str.
           1873]
 gi|253562963|gb|EES92409.1| ATPase of the pp-loop superfamily [Clostridium botulinum D str.
           1873]
          Length = 239

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 89/218 (40%), Gaps = 15/218 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L++     S    +  AI++D      A  +   +  
Sbjct: 18  IQSGDKIAVGLSGGKDSITLLYLLNAY-KRFSPEPFELIAITLD----PGAGADFTEMIR 72

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +C  L + + +   +      + + ++   +     R   +++HAK +    I   H  +
Sbjct: 73  ICKELNVPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKIALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G   + + DT L   ++ I RP +    + I+SF+   NIS  
Sbjct: 133 DAIETLLMSMF----YEGRINTFLPDTYLSRADIHIIRPMVYIDEQSIKSFINNSNISIV 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           E+P   +   +R  ++     ++     LK      L 
Sbjct: 189 ENPCPANGFTKREYMKNLTYSLENDIPGLKNNLLNSLS 226


>gi|197303257|ref|ZP_03168298.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC
           29176]
 gi|197297683|gb|EDY32242.1| hypothetical protein RUMLAC_01980 [Ruminococcus lactaris ATCC
           29176]
          Length = 238

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 88/233 (37%), Gaps = 18/233 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            LS I         L     + V VSGG DS+ LL A+  +         + SAI+ +  
Sbjct: 6   LLSLIRQAIEEYHMLEDGDRVAVGVSGGKDSLTLLYAMRQLQRFYP-KNFELSAITCNVG 64

Query: 62  LRETAKDEVRY--VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEH 113
                 + + +  VSD C  L+I +  V  K         P+    +   + R   + + 
Sbjct: 65  F-----EGMDFTGVSDFCDSLKIPYEQVDTKIAEIVFQENPEIRPCSLCAKLRKGAMYKQ 119

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
              +    I  AH  DD +ET  M        +G   +    T+L +  + + RP +   
Sbjct: 120 LAELGINKIAYAHNKDDFIETALMSLI----YEGRFYAFPPMTVLPEAGVTVIRPMMYVP 175

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            + + +F++++ I   ++    D   +R   R+ +  I+      K +    +
Sbjct: 176 EKGVANFVVEQGIQIVKNACPVDGSTKREYARQLMEQINRETPGAKDRMMHAI 228


>gi|119174426|ref|XP_001239574.1| hypothetical protein CIMG_09195 [Coccidioides immitis RS]
          Length = 812

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 9/157 (5%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +    P +I   VSGG DSM L      ++ +     +   A  VDH  RE + DE   V
Sbjct: 35  KENALPRNI---VSGGPDSMALAHLCRRLIVEGHIPDLNVKAFIVDHKAREKSTDEALKV 91

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHT 127
           +     + +   V++ +  +              AR  RY  +     T N   +   H 
Sbjct: 92  AGWIKSMGLKSQVLTLQWPEGTKDPARLPNFETLARRLRYQALGTACVTENIRALFLGHH 151

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            DD +ET  +R  + +   G+        I    +LW
Sbjct: 152 RDDNVETALLRLAQGHGRFGLAGFDSVSPIPECHSLW 188



 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLK 219
             ++I RPF    +  + +      + +  DP+N D     R  VR+ +   DL      
Sbjct: 239 GGVYIFRPFRSFPKARLEATCRVARVPFVIDPTNEDHTLTVRNTVRKLLSSGDLPRALQS 298

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
                 +    N      +       ++ +  I+ D 
Sbjct: 299 PSILAFISK--NQRAKERLQDLTDSFLKLVRVINFDF 333


>gi|291531576|emb|CBK97161.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium siraeum 70/3]
          Length = 241

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 19/230 (8%)

Query: 9   VRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           +R  V+          I V VSGG DS+ LL  L  +     F     +A+++D      
Sbjct: 8   IRKAVQDFDLIQKGDRIAVGVSGGKDSLVLLAGLAQMRRFAEF-DYDITAVTIDPGFNGV 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTI 117
                    V+ +C +L +  S+V  +      + + +    +     R   + + AK  
Sbjct: 67  PNNY---EAVARLCEKLDVPFSLVHTQIGEIVFDIRKEPNPCSLCANMRRGALHDAAKAA 123

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H  DD +ET  M        +G        T L   ++ + RP +      +
Sbjct: 124 GCNKLALGHNNDDVIETFIMNLF----NEGRIGCFSPKTHLDRKDITVIRPLVLAPESQV 179

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            S   +      +     D    R + + F+RD++      K++ F  LR
Sbjct: 180 LSACNRNGFEIIKSVCPADKTTTRQKTKEFLRDMEHKDKGFKLRMFTALR 229


>gi|302872795|ref|YP_003841431.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302575654|gb|ADL43445.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 235

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 89/237 (37%), Gaps = 19/237 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F    ++V  F   +     I V VS G DS+ +L  L  +       K    AI+VD  
Sbjct: 5   FSKVRKAVEDF-EMIEDGDKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITVDMG 62

Query: 62  LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113
                 + + ++   + C ++ +   +V         + + +    +     R  +++  
Sbjct: 63  F-----ESMDFLPIKEFCDKINVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK++    +   H  DD +ET ++        +G        T L    + + RP +  +
Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITVIRPMIYVK 173

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             ++RS   +  +    +P   + +  R R++ FV+ +       K   F  ++  +
Sbjct: 174 EHELRSAAKKLELPVITNPCPANGKTNRQRIKEFVKSLKQFHPVTKDLVFNAIKRNI 230


>gi|164428026|ref|XP_956207.2| hypothetical protein NCU01570 [Neurospora crassa OR74A]
 gi|16416041|emb|CAD01129.1| conserved hypothetical protein [Neurospora crassa]
 gi|157071979|gb|EAA26971.2| predicted protein [Neurospora crassa OR74A]
          Length = 797

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 27/159 (16%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI---------------KFSAISVDHC 61
               HI  A+SGG DSM L    H +  ++S                   K  A+ VDH 
Sbjct: 33  PRHRHIGCAISGGVDSMALAFLFHRLKQEKSLNASVSPNEQFRVGDNILGKVRAVIVDHG 92

Query: 62  LRETAKDEVRYVS-----DVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYAL 109
           LRE + +E + V+      +   +      ++W+       + K    +   AR+ RYA 
Sbjct: 93  LREGSDEEAQKVAHAIKTKIGDMVDPTIETINWESELGPGVDPKTHPSIEPLARKLRYAA 152

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
           I+   +  N   + T H  DDQ ET+ MR       +G+
Sbjct: 153 IAGVCQRHNICSLFTGHHEDDQYETILMRMISGRGYRGL 191



 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 16/170 (9%)

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYL 218
           D  + I RP L   ++ + +   +  I W ED +N D  F  R  +R  V+   L     
Sbjct: 290 DGGIMIYRPLLGFGKDRLIATCEENGIPWFEDHTNADPTFTPRNAIRYLVKHHQLPNALQ 349

Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
           K    Q          A        +    +  ++     +++ +  + L        G 
Sbjct: 350 KPAILQLAARCRARVAAEEAEAGRVLERLYVHDLATTAGTVEAEMPRFRL-------PGG 402

Query: 279 ISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTL 328
             L    S+ R    +        +I  ++I R    L +     NLPTL
Sbjct: 403 PRLSRRSSVWRKRRLVH-----YRTIAAIIIRR---LLSLVTPNHNLPTL 444


>gi|332157910|ref|YP_004423189.1| hypothetical protein PNA2_0268 [Pyrococcus sp. NA2]
 gi|331033373|gb|AEC51185.1| hypothetical protein PNA2_0268 [Pyrococcus sp. NA2]
          Length = 323

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 86/240 (35%), Gaps = 19/240 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S ++      R +     I VAVSGG DS+ LL  L  +   R     +  AI++D 
Sbjct: 29  MVESKVKRTIRKYRMIRKGERIGVAVSGGKDSVVLLHLLAKL---RKKFPFEIVAITIDE 85

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREA 105
            ++      V         L + H +  +K+                  + G  +     
Sbjct: 86  GIKGYRDKSVEVAKRNAELLGVEHHIYRFKDYIGFTLDETVQIMGERGERLGACSYCGVW 145

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R  L+++ A+ +    +      DD+++   M   R    + +G +G    ++++  +  
Sbjct: 146 RRWLLNKAAEELKVDKLALGLNLDDEVQVFLMNLMRGDVAR-LGRTGPYYEVIHEGLVPR 204

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +P      ++I  + +  NI              R  +R ++ +++      K +  + 
Sbjct: 205 IKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEEKHPGTKYQLLRS 264


>gi|14591444|ref|NP_143524.1| hypothetical protein PH1680 [Pyrococcus horikoshii OT3]
 gi|3258109|dbj|BAA30792.1| 320aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 320

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 87/240 (36%), Gaps = 19/240 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S ++      R +     I VAVSGG DS+ LL  L  +   R     +  AI++D 
Sbjct: 29  MVESKVKRTIRKYRMIKKGERIGVAVSGGKDSVVLLHLLAKL---RKKFPFEIVAITIDE 85

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREA 105
            ++      ++        L + H +  +K+                  + G  +     
Sbjct: 86  GIKGYRDKSIKVAKKNAELLGVEHHIYRFKDYIGFTLDETVEIMGARGERLGACSYCGVW 145

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R  L+++ A+ +    +      DD+++   M   R    + +G +G    ++++  +  
Sbjct: 146 RRWLLNKAAEELKVDKLALGLNLDDEVQMFLMNLMRGDVAR-LGRTGPYYEVIHEGLVPR 204

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +P      ++I  + +  NI              R  +R ++ +++      K +  + 
Sbjct: 205 IKPLREVPEKEIVLYAVLNNIEVDLSECPYAVEAFRAEIRDWLNEMEEKHPGTKYQLLRS 264


>gi|297544802|ref|YP_003677104.1| PP-loop domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842577|gb|ADH61093.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 235

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 22/219 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77
           I V VSGG DS+ LL  LH +   ++F   KF      +++          + + V + C
Sbjct: 24  IAVGVSGGKDSVTLLYGLHLL---KNFYPKKFEVMGLMLTL-----GYDNFDPKPVENFC 75

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               I   +   +  K       +    +     R   ++  AK      +  AH +DD 
Sbjct: 76  REKEIPFFIKETEIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T  M         G   +    + L    + + RP +  + +DIRS + + N+   ++
Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKNNLPVVKN 191

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P   +    R  +R  + D+      +  + F  ++  +
Sbjct: 192 PCPVEGHTTRHYIRNLIIDLKKEIPEIDKRIFTAIKKDI 230


>gi|168213914|ref|ZP_02639539.1| ExsB family protein [Clostridium perfringens CPE str. F4969]
 gi|170714588|gb|EDT26770.1| ExsB family protein [Clostridium perfringens CPE str. F4969]
          Length = 244

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 19/232 (8%)

Query: 4   SPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +   R  ++  +L+     I V +SGG DS+ LL  L +     S  K +  AI+++ 
Sbjct: 6   KLLSKTRQAIKEYNLIEDGDKIAVGLSGGKDSLTLLHILKNYQR-FSPEKFELIAITLNP 64

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114
              + +      + ++C  + +    +         + K +    +     R   ++++A
Sbjct: 65  GGVDNSP-----LHELCKNIDVPFYEIQTDIKEIVFDIKKEKNPCSLCANLRRGALNDNA 119

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    +   H  DD LET+ +      + +G        + ++  NL + RP +    
Sbjct: 120 EKLGCNKVALGHHKDDALETLMLSI----SYEGRINCFSPKSFMHKNNLTLIRPMVFIEE 175

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             IR    + N    ++P   D + +R  ++  +R +D      K   F+ L
Sbjct: 176 SQIRKAATEYNFPVIKNPCPADGKTKREDMKNLIRSLDKTMPGFKKNLFKSL 227


>gi|147921431|ref|YP_684755.1| ATPase [uncultured methanogenic archaeon RC-I]
 gi|110620151|emb|CAJ35429.1| predicted ATPase (PP-loop superfamily) [uncultured methanogenic
           archaeon RC-I]
          Length = 308

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 16/186 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R      HI VA+SGG DS   L  L    + RS   IKFSAI+VD  +     + + Y 
Sbjct: 42  RMAKPGDHIAVAMSGGKDSAVTLSILVDTFTTRS--NIKFSAITVDEGIEGYRNESIPYA 99

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLI 122
            ++C RL + H VVS+K     T     +RE            R  L++  A+ I A  +
Sbjct: 100 KELCDRLGVPHYVVSFKEEIGHTLDDILSRERKEASCTYCGVFRRTLLNRKAREIGANKL 159

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD+ + V +       E+   L+ +  +   +  +   +P +    ++I  +  
Sbjct: 160 ATGHNLDDEAQVVLLNVMNGDVER---LARLRPSRAQEGLIPRIKPLIDVPEKEIALYAF 216

Query: 183 QRNISW 188
            + + +
Sbjct: 217 LKKLPF 222


>gi|260887263|ref|ZP_05898526.1| ExsB family protein [Selenomonas sputigena ATCC 35185]
 gi|330838980|ref|YP_004413560.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863325|gb|EEX77825.1| ExsB family protein [Selenomonas sputigena ATCC 35185]
 gi|329746744|gb|AEC00101.1| PP-loop domain protein [Selenomonas sputigena ATCC 35185]
          Length = 263

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/249 (21%), Positives = 88/249 (35%), Gaps = 20/249 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   + +V  F + +     IL+ +SGG DS+ L  AL  +L  R        A+++D  
Sbjct: 9   FSKLMRAVVEF-QLIEDDDRILIGISGGKDSIFLAYALA-ILQKRMKKNFSLCALTID-- 64

Query: 62  LRETAKDE--VRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114
                 ++  V  ++  C  + I    VS          P+          R   I+ +A
Sbjct: 65  --PQFTEDFPVARIASFCEEISIPFEAVSVNIAGTIEETPEKNPCFTCAFFRRGAINRYA 122

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      +  AH  DD +ET+ M         G   +    T L    + + RP +  R 
Sbjct: 123 QEHGCNKVAYAHHNDDAVETLLM----GILYSGQIHTFTPKTYLDRSGITVIRPLVYFRE 178

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            +IR  +     S    P   D    R  V+  +   +     +       +R    NAV
Sbjct: 179 SEIRDAIAVHGFSPIPSPCPLDGTTMRQEVKELISSWEKKDPQIYHHLAASMR---ENAV 235

Query: 235 AMLIPKYLT 243
             L P+  T
Sbjct: 236 GELWPRMQT 244


>gi|260437103|ref|ZP_05790919.1| ExsB family protein [Butyrivibrio crossotus DSM 2876]
 gi|292810415|gb|EFF69620.1| ExsB family protein [Butyrivibrio crossotus DSM 2876]
          Length = 242

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 18/219 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76
              I + +SGG DS+ LL AL  +       K +  AI+V   L     + + +  V ++
Sbjct: 23  GDKIAIGISGGKDSLTLLYALAGLRRFYP-KKYELVAITVKLGL-----ENMDFTPVKEL 76

Query: 77  CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           C +L + +  V  +       ++ ++   +   + R    +E A  +       AH  DD
Sbjct: 77  CDKLEVPYYTVDTEIYQIIFEARKESNPCSLCAKMRKGAFNEKALELGCNKFAYAHHRDD 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET YM        +G   +    T +    L + RP +      I+SF  +  +   +
Sbjct: 137 LIETFYMSLM----YEGRIHTFSPVTYMDKSGLTLIRPLMLIPEYAIKSFSKRYELPIVK 192

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           +    D   +R  ++  + ++      L    F  +   
Sbjct: 193 NQCPADGYTKRQYIKDMLHNLSKENPGLTEHSFTAIINA 231


>gi|326389916|ref|ZP_08211479.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993976|gb|EGD52405.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 235

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 22/219 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77
           I V VSGG DS+ LL  LH +   ++F  +KF      +++          +   V + C
Sbjct: 24  IAVGVSGGKDSITLLYGLHLL---KNFYPVKFDVMGLMLTL-----GYDNFDPTPVENFC 75

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               I   +      K       +    +     R   ++  AK      +  AH +DD 
Sbjct: 76  REKGIPFFIKETDIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T  M         G   +    + L    + + RP +  + +DIRS + + N+   ++
Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLPVVKN 191

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P   +   +R  +R  + D+      +  + F  ++  V
Sbjct: 192 PCPVEGHTKRHYIRNLIIDLKKEIPEIDKRIFTAIKKDV 230


>gi|332653827|ref|ZP_08419571.1| ExsB family protein [Ruminococcaceae bacterium D16]
 gi|332516913|gb|EGJ46518.1| ExsB family protein [Ruminococcaceae bacterium D16]
          Length = 256

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 14/221 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--V 73
           +     + V VSGG DS+ LL AL  +         +  AI++D       +  + +  V
Sbjct: 18  IAPNDRVAVGVSGGKDSLMLLTALAKLREFYPIP-FEVEAITLDMG-HADGRPGMDFTPV 75

Query: 74  SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +  C  L + ++++  +      + + +    +   + R   +    K    T I   H 
Sbjct: 76  ARYCEELGVPYTLIPSEIHHIIFDVRKEKNPCSMCAKMRRGALHNAMKERGITKIALGHH 135

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +DD +ET++M        +G        T L  + +   RP L C  + +R    + ++ 
Sbjct: 136 YDDAVETLFMSLI----FEGRLSCFQPVTWLDRMGITQIRPMLYCGEQMVRHTAQRLDLP 191

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
             E+P   +   +R  ++  + +++     LK + F  ++ 
Sbjct: 192 VVENPCPANGNTKRQEIKELIYELNGRYPGLKSRAFGAMQR 232


>gi|307267037|ref|ZP_07548552.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917962|gb|EFN48221.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 235

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 22/219 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77
           I V VSGG DS+ LL  LH +   ++F  +KF      +++          +   V + C
Sbjct: 24  IAVGVSGGKDSITLLYGLHLL---KNFYPVKFDVMGLMLTL-----GYDNFDPTPVENFC 75

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               I   +      K       +    +     R   ++  AK      +  AH +DD 
Sbjct: 76  REKGIPFFIKETDIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T  M         G   +    + L    + + RP +  + +DIRS + + N+   ++
Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLPVVKN 191

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P   +   +R  +R  + D+      +  + F  ++  +
Sbjct: 192 PCPVEGHTKRHYIRNLIIDLKKEIPEIDKRIFTAIKKDI 230


>gi|156047811|ref|XP_001589873.1| hypothetical protein SS1G_09595 [Sclerotinia sclerotiorum 1980]
 gi|154693990|gb|EDN93728.1| hypothetical protein SS1G_09595 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 587

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 126/437 (28%), Gaps = 123/437 (28%)

Query: 26  VSGGSDSMGLLIALHSVLSDR----------SFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           VSGG DSM L      + ++              KI F AI V+H +R+ + +E + V  
Sbjct: 37  VSGGVDSMALAALCMQMKNNYIPFASDGYPIHLNKIDFRAIIVNHGVRDGSLEEAQKVMK 96

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           V                     L + AR+ R+  I ++ +  +   ++  H  DDQ ETV
Sbjct: 97  V---------------------LESLARKYRFQAIGKYCQKSDINSLLLGHHSDDQAETV 135

Query: 136 YMRSQRDYAEKG-MGLS---------GMCDTILYDLNLWISRPFLRCRRED--------- 176
            MR  +     G +G+          G+         + +S P     R+          
Sbjct: 136 VMRLAKGALGAGLLGIKPSSPIPECGGLYGVHESGSPITLSPPITNLNRQTKPLPSRQTG 195

Query: 177 --------------------------------------IRSFLLQRNISWCEDPSNTDDR 198
                                                 + +      + W ED +N D  
Sbjct: 196 QNNIDSPASGAKNIMPELKVESGGITLYRPLLEFPKERLIATCKALGMEWFEDDTNNDPT 255

Query: 199 -FERVRVRRFVRDIDLHALYLK------MKKFQDLRVKVNNAVAMLIPKYLTVHM---RS 248
             +R  +R       L ++  K        +FQ+        V  LI K         R 
Sbjct: 256 LTDRNAIRYLYDRTGLPSILPKSRVLSLAAQFQNADNLRQQEVDQLIKKCKVTSFSTRRG 315

Query: 249 IIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK--------SGKRG 300
            + I    +  D+     +  +        ++     S+E+ +  +              
Sbjct: 316 TLIIRFPFIAHDAPQRSTIAAMLLRRIIMTVTPNSVVSLEQALKAVPEIFPLSENEIAPK 375

Query: 301 CVSIGRVVIDR----------RANFLWITRAVRNLPTLI----LYPEETTVW---DGRYQ 343
             +   V+                 ++     R  P  I    L PE+   W   D RY 
Sbjct: 376 IFNTAGVLFQPINVDPKIGGSNEWHIFRQPRYRYSPDEIVVPELLPEKQPSWVLFDNRYW 435

Query: 344 FQNLSDSLIQIGPQSYR 360
               ++   Q G    R
Sbjct: 436 LSIHNELASQAGSLVVR 452


>gi|62185135|ref|YP_219920.1| hypothetical protein CAB507 [Chlamydophila abortus S26/3]
 gi|62148202|emb|CAH63959.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 254

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 22/236 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I+VA+SGG DS+ LL+ L ++ S R F K+   A+++     
Sbjct: 19  SLVRKALYTYSMLENHTKIVVALSGGKDSLSLLLMLKAI-SGRGFPKLDLYAVNIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             ++   +Y++++C ++ + +S V+     P+     +  + R  L+ + AK + AT + 
Sbjct: 78  CGSEVSKQYLANICDKIHVPYSSVT-SPYDPEVPECYSCSQVRRRLLFQAAKDVGATAVA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +      IR F  +
Sbjct: 137 FGHHRDDVVQTALMNLL--HKAEFAGMLPVLDMVHF--GITILRPLIFTPESYIRKFAKE 192

Query: 184 RNISWCEDPSNTDDRFERVRVR---RFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
                          F RV  R     +R     AL L    F   R  +  A+  
Sbjct: 193 SG-------------FARVTCRCPVVSLRTKTEEALKLLEDVFPQARHNIALAIEQ 235


>gi|291533245|emb|CBL06358.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Megamonas hypermegale ART12/1]
          Length = 258

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 12/213 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             IL+ +SGG DS+ +  AL  + +          AI+++    +    E       C +
Sbjct: 26  DKILIGLSGGKDSLFMAYALTELKNTLK-KNFTLGAITINPMFTKDFSCEAM--QKFCDK 82

Query: 80  LRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           L + + +          ++       +    R   I+ +AK      I  AH  DD +ET
Sbjct: 83  LNMPYHIHEVNIAETIANQDNKNACYSCAFFRRGAINGYAKEHGYNKIAYAHNHDDAVET 142

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            +M         G   + M  T L   ++ + RP L  R E+IR+ L       C  P  
Sbjct: 143 FFMNLF----YSGQLKTFMPSTYLSRSDVTVIRPLLYFREEEIRNALSLHGQEPCAPPCP 198

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +    R + +  + ++      L       +R
Sbjct: 199 FNGNTMRQKAKNLIEELSKENPLLYEHLSAAMR 231


>gi|315231685|ref|YP_004072121.1| n-type ATP pyrophosphatase [Thermococcus barophilus MP]
 gi|315184713|gb|ADT84898.1| n-type ATP pyrophosphatase [Thermococcus barophilus MP]
          Length = 321

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 86/239 (35%), Gaps = 28/239 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---R 63
           ++VR + R +     I V VSGG DS+ LL  L  +   R     +  AI++D  +   R
Sbjct: 36  QTVRKY-RMIKRGERIAVGVSGGKDSVVLLHLLAKL---RKKFPFEIVAITIDEGIEGYR 91

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK-----------------NSKPQTGLMAAAREAR 106
             +   V         L I H V S+K                     + G  +     R
Sbjct: 92  PPS---VEIAKKNAELLGIEHHVYSFKEYIGFTLDETVQIMGSFEKGERVGACSYCGVWR 148

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             L++  A+ + A  +      DD+ +   M   R    + +G +G    ++++  +   
Sbjct: 149 RWLLNYAAQDVQADKLAIGLNLDDEAQVFLMNIMRGDIAR-LGRTGPYYEVIHEDLVPRI 207

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
           +P      ++I  + +  NI              R  +R ++ +++      K +  + 
Sbjct: 208 KPLREVPEKEIVLYAVLNNIEVDFSECPYAVEAFRAEIRDWLNEMEEKHPGTKYQILRS 266


>gi|289578527|ref|YP_003477154.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
 gi|289528240|gb|ADD02592.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
          Length = 235

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 22/219 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77
           I V VSGG DS+ LL  LH +   ++F   KF      +++          + + V + C
Sbjct: 24  IAVGVSGGKDSVTLLYGLHLL---KNFYPKKFEVMGLMLTL-----GYDNFDPKPVENFC 75

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               I   +   +  K       +    +     R   ++  AK      +  AH +DD 
Sbjct: 76  REKEIPFFIKETEIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T  M         G   +    + L    + + RP +  + +DIRS + + N+   ++
Sbjct: 136 IDTFVMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKNNLPVVKN 191

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P   +   +R  +R  + D+      +  + F  ++  +
Sbjct: 192 PCPVEGHTKRHYIRNLIIDLKKEIPEIDKRIFTAIKKDI 230


>gi|167040443|ref|YP_001663428.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514]
 gi|256752475|ref|ZP_05493333.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914494|ref|ZP_07131810.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307724270|ref|YP_003904021.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854683|gb|ABY93092.1| PP-loop domain protein [Thermoanaerobacter sp. X514]
 gi|256748677|gb|EEU61723.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889429|gb|EFK84575.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307581331|gb|ADN54730.1| PP-loop domain protein [Thermoanaerobacter sp. X513]
          Length = 235

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 22/219 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77
           I V VSGG DS+ LL  LH +   ++F   KF      +++          +   V + C
Sbjct: 24  IAVGVSGGKDSVTLLYGLHLL---KNFYPEKFEVMGLMLTL-----GYDNFDPTPVENFC 75

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               I   +      K       +    +     R   ++  AK      +  AH +DD 
Sbjct: 76  REKGIPFFIKETDIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T  M         G   +    + L    + + RP +  + +DIRS + + N+   ++
Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLPVVKN 191

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P   +   +R  +R  + D+      +  + F  ++  V
Sbjct: 192 PCPVEGHTKRHYIRNLLIDLKKEIPEIDKRIFTAIKKDV 230


>gi|315453138|ref|YP_004073408.1| putative PP-loop family protein [Helicobacter felis ATCC 49179]
 gi|315132190|emb|CBY82818.1| Putative PP-loop family protein [Helicobacter felis ATCC 49179]
          Length = 256

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 17/176 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ILV +SGG DS+ LL  L + +   +    +F AI+V + L E    ++ ++S +C+
Sbjct: 26  GDRILVGLSGGKDSI-LLSCLLARMRAHAPFNFEFKAITVHYGLNE----DLEWLSQLCT 80

Query: 79  RLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I + +V         +  + Q+   +     R  ++  +A       +  AH  DD 
Sbjct: 81  EQNIPYEIVRTNIAQTIREKRREQSSYCSFCSRMRRGVLYNYALENGYNKLALAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +E+ +M    + +     L  M      +  L++ RP +  R      F+  +NI 
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYKAENGLFVIRPLIHIRERQSIDFVKSQNIP 191


>gi|18309972|ref|NP_561906.1| hypothetical protein CPE0990 [Clostridium perfringens str. 13]
 gi|110801239|ref|YP_695693.1| ExsB family protein [Clostridium perfringens ATCC 13124]
 gi|110801904|ref|YP_698381.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|168208060|ref|ZP_02634065.1| ExsB family protein [Clostridium perfringens E str. JGS1987]
 gi|168211804|ref|ZP_02637429.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626]
 gi|169341156|ref|ZP_02863249.1| ExsB family protein [Clostridium perfringens C str. JGS1495]
 gi|18144650|dbj|BAB80696.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110675886|gb|ABG84873.1| ExsB family protein [Clostridium perfringens ATCC 13124]
 gi|110682405|gb|ABG85775.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|169299763|gb|EDS81815.1| ExsB family protein [Clostridium perfringens C str. JGS1495]
 gi|170660645|gb|EDT13328.1| ExsB family protein [Clostridium perfringens E str. JGS1987]
 gi|170710238|gb|EDT22420.1| ExsB family protein [Clostridium perfringens B str. ATCC 3626]
          Length = 244

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 92/232 (39%), Gaps = 19/232 (8%)

Query: 4   SPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +   R  ++  +L+     I V +SGG DS+ LL  L +     S  K +  AI+++ 
Sbjct: 6   KLLSKTRQAIKEYNLIEDGDKIAVGLSGGKDSLTLLHILKNYQR-FSPEKFELIAITLNP 64

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114
              + +      + ++C  + +    +         + K +    +     R   ++++A
Sbjct: 65  GGVDNSP-----LHELCKNIDVPFYEIQTDIKEIVFDIKKEKNPCSLCANLRRGALNDNA 119

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    +   H  DD LET+ +      + +G        + ++  NL + RP +    
Sbjct: 120 EKLGCNKVALGHHKDDALETLMLSI----SYEGRINCFSPKSFMHKNNLTLIRPMVFIEE 175

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             IR  + + N    ++P   D + +R  ++  +R +D      K   F+ L
Sbjct: 176 SQIRKAVAEYNFPVIKNPCPADGKTKREDMKNLIRSLDKTMPGFKKNLFKSL 227


>gi|167037749|ref|YP_001665327.1| PP-loop domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116163|ref|YP_004186322.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856583|gb|ABY94991.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929254|gb|ADV79939.1| PP-loop domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 235

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 22/219 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA----ISVDHCLRETAKDEVRYVSDVC 77
           I V VSGG DS+ LL  LH +   ++F   KF      +++          +   V + C
Sbjct: 24  IAVGVSGGKDSVTLLYGLHLL---KNFYPEKFEVMGLMLTL-----GYDNFDPTPVENFC 75

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               I   +      K       +    +     R   ++  AK      +  AH +DD 
Sbjct: 76  QEKGIPFFIKETDIKKIVFDYRKEENPCSLCANLRRGALNNFAKEKGCNKVALAHHYDDL 135

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T  M         G   +    + L    + + RP +  + +DIRS + + N+   ++
Sbjct: 136 IDTFIMNLF----YNGRLHTFEPVSFLDRSKITVIRPMIYVKEKDIRSEVKKSNLPVVKN 191

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P   +   +R  +R  + D+      +  + F  ++  V
Sbjct: 192 PCPVEGHTKRHYIRNLLIDLKKEIPEIDKRIFTAIKKDV 230


>gi|298704809|emb|CBJ48957.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 542

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 97/268 (36%), Gaps = 30/268 (11%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSD 75
           V    +LV VSGGSDS+  L+      +      ++  A   +H LR   +  +   V  
Sbjct: 30  VAGKEVLVLVSGGSDSVA-LLLALERAAKTFQPPLRVEAAHFNHGLRGKDSDADQDLVVK 88

Query: 76  VCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINAT----- 120
           +   LR+   V  WK  +           Q       R     ++++      A      
Sbjct: 89  MADSLRVPLHVRRWKGPEEGGTGGPGSGMQERARRWRRAEAKDILAKSMTEAGAGRGGRG 148

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +I TAH  DDQ ETV +++ R        + GM        +    RP L   + ++  F
Sbjct: 149 VIATAHHKDDQTETVLLKALRGAHI--TNIQGMAW-----HSDPFVRPLLGAHKTELLDF 201

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH------ALYLKMKKFQDLRVKVNNAV 234
           L++   +W ED SN   ++ R RVR  +  +         AL  ++++           V
Sbjct: 202 LVRGRHAWREDGSNQVAKYARNRVRLQLIPLLRELAGGTKALDTRVEELSRQSHFARQMV 261

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDST 262
                ++   H+       +     D T
Sbjct: 262 EREALRWERAHLSGCRFDDEAGGCRDET 289


>gi|160880393|ref|YP_001559361.1| PP-loop domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160429059|gb|ABX42622.1| PP-loop domain protein [Clostridium phytofermentans ISDg]
          Length = 242

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 85/214 (39%), Gaps = 14/214 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I + +SGG DS+ LL AL  +       K    AI+V          +   ++ +C 
Sbjct: 23  GDKIAIGISGGKDSLTLLYALAGLRRFYP-KKFTLEAITVSLGF---DNFDTSKIAALCK 78

Query: 79  RLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L + ++VV+   +      + ++   +   + R    ++ AK +       AH  DD +
Sbjct: 79  ELDVNYTVVNTDIAPIIFETRKESNPCSLCAKMRKGAFNDKAKELGCNKSAYAHHKDDVI 138

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  M        +G   +    T L  +++ + RP +     D+  F    N+S  ++P
Sbjct: 139 ETTLMSLL----FEGRYYTFSPITYLDRMDITLIRPLIYVDEVDVIGFKNAYNLSVLKNP 194

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              D   +R   +  V+ ++      +++ F  +
Sbjct: 195 CPIDGYTKREYAKNLVKQLNQEHPGARVRLFHAV 228


>gi|21228898|ref|NP_634820.1| hypothetical protein MM_2796 [Methanosarcina mazei Go1]
 gi|20907428|gb|AAM32492.1| conserved protein [Methanosarcina mazei Go1]
          Length = 302

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 97/254 (38%), Gaps = 26/254 (10%)

Query: 2   FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+  +E  ++  VR   S+     I VA+SGG DS   L  +H +L DR    I+  AIS
Sbjct: 28  FIEDVERKIKLTVRRDYSIKKNDVIAVALSGGKDSSVALYIMHKILGDR--PDIQIVAIS 85

Query: 58  VD---HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAR 103
           VD   H  R  +   +     +   L + H + S+K+              + G  +   
Sbjct: 86  VDEGIHGYRPQS---LELAKQLTEALGVRHIIKSFKDEHGATMDELAVMDREKGTCSYCG 142

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             R ++++  A  I AT ++T H  DD+ +T+ +   R   E+   +  +   +  +  +
Sbjct: 143 VLRKSILNRVAIEIGATKLVTGHNLDDEAQTILLNHFRGDMER---MVRLAPPVAVEGLV 199

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
             ++P      +++  + L  ++              R  +R  +   + +    K    
Sbjct: 200 MRAKPLRNIPEKEVALYALVNSLPVDFSECPYAGEALRGEIRELLNGFETNHPGTKYSLL 259

Query: 224 QDLRVKVNNAVAML 237
           +     V      L
Sbjct: 260 RGFDKLVGALAKEL 273


>gi|221214714|ref|ZP_03587683.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Burkholderia
           multivorans CGD1]
 gi|221165253|gb|EED97730.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Burkholderia
           multivorans CGD1]
          Length = 154

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++V   +  +   A I +A SGG DS  LL A     + R+ G  +  A+ V H L   
Sbjct: 14  LDAVGVALSGVPDGARIAIAYSGGLDSSVLLDA-----AVRAAGASRCVALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARYALISEHAKTINATLIMT 124
           A     +  +  +RL +A   +     +    G+ A+ARE RYA +    +   A  +  
Sbjct: 69  ADAWAAHAREQAARLGVAFDAMHVDVPRDSGVGIEASARERRYAALDAMCERHGAAALWL 128

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMG 149
           A   DDQ ETV ++  R     G+ 
Sbjct: 129 AQHADDQAETVLLQLLRGAGIAGLA 153


>gi|167720279|ref|ZP_02403515.1| putative cell cycle protein [Burkholderia pseudomallei DM98]
          Length = 392

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 15/232 (6%)

Query: 95  QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154
             G+ A+AR+ARY  +        A  +  A   DDQ ETV ++  R     G+      
Sbjct: 2   GQGIEASARDARYRALETMCARYGARTLWLAQHADDQAETVLLQLLRGAGIAGLAAMA-P 60

Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
                  ++   RP L   R  +  +  Q  + W +D SNTD R+ R  +R  V    L 
Sbjct: 61  QYRPALADVVRMRPLLHLLRAQLECYAQQHALRWIDDESNTDTRYARNALRVDV----LP 116

Query: 215 ALYLKMKKFQDL---RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL------F 265
           AL      F+D      +   A   L+     + +R++      +L+ D+ +        
Sbjct: 117 ALAPHFPGFRDALARTAQHAAAAQRLLDDLAAIDLRAVARADVRVLSRDALVALDDERGA 176

Query: 266 YLLRVSAAICG-GQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
            LLR      G    S      M + +   +      V      +    + +
Sbjct: 177 NLLRYWMRSLGLPGASAARLAEMVKQLRAARDAHALRVDHAGWRLRLYRDGV 228


>gi|237796737|ref|YP_002864289.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657]
 gi|229260662|gb|ACQ51695.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657]
          Length = 249

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 18/213 (8%)

Query: 9   VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           VR  +   +++ P   I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L   
Sbjct: 16  VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119
              ++  +   C +  I   +          N + +    +   + R   +   +K+I A
Sbjct: 72  -DMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLIRVSKSIGA 130

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD +ET++M   +     G   S        D  + I RP +  R + I+ 
Sbjct: 131 TKVALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKD 186

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + N+   + P   D +  R  ++  +  ++
Sbjct: 187 MVKKYNLPVVKSPCPEDKKTTREEIKNLMFKLE 219


>gi|256372668|ref|YP_003110492.1| tRNA(Ile)-lysidine synthetase [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256009252|gb|ACU54819.1| tRNA(Ile)-lysidine synthetase [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 306

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/173 (29%), Positives = 67/173 (38%), Gaps = 27/173 (15%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V VSGG+DS+GL   L        FG  +  AI VDH LR  +  E   V+   + L I+
Sbjct: 39  VGVSGGADSLGLAALLA-------FGGKRVLAIHVDHGLRPGSAREGADVARQLAPLGIS 91

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
                 +   P   L A AR AR   + + A+         AHT DDQ ETV +   R  
Sbjct: 92  VLERRVRVI-PGPNLEARARSARLGALGDAAR---------AHTMDDQAETVLLNLLRGS 141

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              G+G                  P L  RR ++        +    DP N D
Sbjct: 142 GLVGIGAMEPGP----------LHPALGLRRSELARVCEAAGLVPLVDPMNQD 184


>gi|29840280|ref|NP_829386.1| hypothetical protein CCA00521 [Chlamydophila caviae GPIC]
 gi|29834628|gb|AAP05264.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
          Length = 247

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 104/238 (43%), Gaps = 20/238 (8%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I+VA+SGG DS+ LL+ L ++ S R F ++   A+++     
Sbjct: 19  SLVRKALYTYSMLENHTKIVVALSGGKDSLSLLLMLKAI-SGRGFPELDLYAVNIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A+   +Y++++C ++++  + ++     P+     +  + R  L+ + AK + AT + 
Sbjct: 78  CGAEVSQQYLANICDKIQVPFTSIA-SPYDPEVPECYSCSQVRRRLLFQAAKELGATAVA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +D  + I RP +      IR F  +
Sbjct: 137 FGHHRDDVVQTALMNLL--HKAEFAGMLPVLDMVHFD--ITILRPLILTPESWIRKFAKE 192

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
                          F RV  R  V  +        +K  +D+  +  + +A+ I ++
Sbjct: 193 SG-------------FARVTCRCPVVSL-RTKTESALKLLEDVFPQARHNIALAIEQH 236


>gi|28493557|ref|NP_787718.1| cell cycle protein MesJ-like protein [Tropheryma whipplei str.
           Twist]
 gi|61217341|sp|Q83MT2|TILS_TROWT RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28476599|gb|AAO44687.1| cell cycle protein MesJ-like protein [Tropheryma whipplei str.
           Twist]
          Length = 415

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 7/146 (4%)

Query: 7   ESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
            + R  + +L    H   +L+A+SGG DS+  ++    V+   +    +  A+ VDH L+
Sbjct: 13  NARRAMLNTLPADLHNQLVLIALSGGRDSLAAMVIASWVIPRLNG---RVGAVVVDHGLQ 69

Query: 64  ETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           E +      V     +  +    +     S+   G  A+AR ARYA   +  +   A  I
Sbjct: 70  ENSARIADEVRIRAEQFALNPILIKRVSPSRVSAGPEASARIARYAAFYDALEETKAYAI 129

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM 148
           + AHT DDQ ETV +   R      +
Sbjct: 130 ILAHTLDDQAETVLLGLMRGSGPSSL 155



 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
             RPFL   R +         + +  DP N D RF RVR+R  V  +  + +   +K   
Sbjct: 246 FIRPFLDITRHETGKICEFYGLDYWNDPHNEDVRFSRVRIRHNVMPVLENEIGPGVKYAL 305

Query: 225 DLRVK--------VNNAVAMLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSA-AI 274
               K        +++    L+ +  +      I +  + L      +   ++R++A   
Sbjct: 306 SRTAKLAQLDTEYLDHLSNELLDEIASKESDWSIRLPINTLQKTPVPIRLRVIRLAALQY 365

Query: 275 CGGQISLPGYRSMERVM 291
               +S    R +ER++
Sbjct: 366 FTVSLSFKHTRQIERLL 382


>gi|120406326|ref|YP_956155.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|119959144|gb|ABM16149.1| tRNA(Ile)-lysidine synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 323

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 114/324 (35%), Gaps = 30/324 (9%)

Query: 8   SVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +V  FVR          VA+SGG+DS          L+  +      +A+ VDH L+  +
Sbjct: 13  AVAGFVRDHAAASGPWCVALSGGADS--------LALTAVAAALRPTTALIVDHGLQPGS 64

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                   D    L    + V         G  AAAR ARY  + E  +      ++ AH
Sbjct: 65  ARVAATARDQAMALGCVGAQVLCVEVGVGGGPEAAARAARYRALEEARR---GAPVLLAH 121

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T DDQ ETV +   R    + +      D           RP L  RR   R    +  +
Sbjct: 122 TLDDQAETVLLGLGRGSGARSIAGMRPSDPPW-------CRPLLGVRRAVTRLACAELGL 174

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNNAVAMLIPKYLTVH 245
           +  +DP NTD RF RVR+R  V  +    L     +        +      L      + 
Sbjct: 175 TPWQDPHNTDRRFTRVRLRTEVLPLLEDVLGGGVAEALARTATALREDTDALDGIAARIV 234

Query: 246 MRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS-------G 297
                 +   +L  + + +   ++R    + GG  +    + +  V   +          
Sbjct: 235 TVPGADLDTAVLTPLPAAVRRRVIR--GWLLGGGANGLTDKQIRAVDDLVVDWHGQGGVA 292

Query: 298 KRGCVSIGRVVIDRRANFLWITRA 321
             G ++  R+   RR + L + R 
Sbjct: 293 VPGGLARERLFAGRRKDVLTLYRE 316


>gi|322700481|gb|EFY92236.1| PP-loop family protein [Metarhizium acridum CQMa 102]
          Length = 653

 Score =  120 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 18/164 (10%)

Query: 2   FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK------ 52
           F   +E+V   RF       P  + +A+SGG DSM +     +++      KI       
Sbjct: 20  FRDAVEAVCPPRFPAVRYARPRRVALAISGGVDSMAMAFLFSNLIRTHRGIKIADNPTEG 79

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQT-------GLMAAAR 103
              + VDH LR  +  E   V+    +L +      ++WK+             + + AR
Sbjct: 80  AFGVIVDHRLRPESTLEAAEVAQELKKLGLKAVTKPLNWKDVSRHGQDPSSLPNIESVAR 139

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147
             RY ++    + +NAT +  AH  DDQ ETV MR    +  +G
Sbjct: 140 TKRYRMLGSTCRYLNATSLFFAHHRDDQYETVLMRYMSGHQYRG 183



 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYL 218
           D  + + RP L   ++ + +      I W EDP+N D     R  +R    D  L A  L
Sbjct: 281 DGGIMVYRPLLEFDKDRLIATCEANKIKWFEDPTNADPTLTPRNAIRHM--DHSLLAPEL 338

Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           + +   D+  +      +   +     MR  +    D 
Sbjct: 339 RKEAILDMSREAKRRTRLEEAEARRWLMREAVIQDFDP 376


>gi|256826250|ref|YP_003150210.1| tRNA(Ile)-lysidine synthetase [Kytococcus sedentarius DSM 20547]
 gi|256689643|gb|ACV07445.1| tRNA(Ile)-lysidine synthetase [Kytococcus sedentarius DSM 20547]
          Length = 356

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/284 (21%), Positives = 91/284 (32%), Gaps = 22/284 (7%)

Query: 5   PIESVRFFVRSLVYPA-----HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--S 57
            +  +R  VR  +  A      +L+A SGG+DS+ ++ A+         G          
Sbjct: 9   AVAEIRRAVRQPLSDAVSAGRAVLLACSGGADSVAMVAAVAFEADRLRRGGASPVVAAGV 68

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           VDH L+  ++         C  L I        + ++   G  A AR AR+A +   A  
Sbjct: 69  VDHGLQAGSEQVAAGAVARCRALGIEQVWSERVEVTRTGEGPEAEARRARHAALERWATA 128

Query: 117 INA-------TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +         T    AHT DDQ E V +   R    +   L+GM           + RPF
Sbjct: 129 LAGGPTGGVGTETWLAHTRDDQAEQVLLGLLRGAGTR--SLAGMA-----PGRGDLVRPF 181

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           L       R       +    DP N D RF RVR RR +  +                  
Sbjct: 182 LAVSAATTRRACRDLGLPVHHDPHNDDPRFTRVRARRVLAHLSAELGEDLAPALARTAEH 241

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA 273
                 +L            +     +   +   +   LR    
Sbjct: 242 ARADADLLDALAAARAEGLAVEQDGAVRVAELAAIEDALRRRVW 285


>gi|160938841|ref|ZP_02086192.1| hypothetical protein CLOBOL_03735 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437804|gb|EDP15564.1| hypothetical protein CLOBOL_03735 [Clostridium bolteae ATCC
           BAA-613]
          Length = 241

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 18/216 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFG--KIKFSAISVDHCLRETAKDEVRYVSDV 76
              I + VSGG DS+     LH++   R F   K +  AI+VD  L      E   V+ +
Sbjct: 23  GDRIAIGVSGGKDSL---TLLHALHHLRRFYPEKYELCAITVDLGL-GNMDLEP--VAAM 76

Query: 77  CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           C    I + ++S +      + + +T   +   + R   ++E AK +    I  AH  DD
Sbjct: 77  CREFEIPYEIISTEIGAVLFDIRKETNPCSLCAKMRKGALNEKAKEMGCNKIAYAHHRDD 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+ M        +G   S    T L  ++L + RP +     D+  F  +  +  C+
Sbjct: 137 VIETMMMSLF----YEGRFHSFSPLTYLDRMDLTVIRPMIFVTEADVIGFRNKYQLPVCK 192

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           +P   D   +R  ++  +  +     ++K   F+ +
Sbjct: 193 NPCPMDGYTKRQYIKELIHRLQEDNPHIKDCMFRAI 228


>gi|329942871|ref|ZP_08291650.1| PP-loop family protein [Chlamydophila psittaci Cal10]
 gi|332287464|ref|YP_004422365.1| PP-loop family protein [Chlamydophila psittaci 6BC]
 gi|313848043|emb|CBY17041.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|325506513|gb|ADZ18151.1| PP-loop family protein [Chlamydophila psittaci 6BC]
 gi|328815131|gb|EGF85120.1| PP-loop family protein [Chlamydophila psittaci Cal10]
 gi|328914712|gb|AEB55545.1| PP-loop type ATPase [Chlamydophila psittaci 6BC]
          Length = 247

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 22/236 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L   A I++A+SGG DS+ LL+ L ++ S R F K+   A+++     
Sbjct: 19  SLVRKALYTYSMLENHAKIVIALSGGKDSLSLLLMLKAI-SGRGFPKLDLYAVNIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             ++   +Y++++C ++ + +S ++     P+     +  + R  L+ + AK + AT + 
Sbjct: 78  CGSEVSKQYLANICDKIHVPYSSIT-SPYDPEVPECYSCSQVRRRLLFQAAKDVGATAVA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +      IR F  +
Sbjct: 137 FGHHRDDVVQTALMNLL--HKAEFAGMLPVLDMVHF--GITILRPLILTPESWIRKFAKE 192

Query: 184 RNISWCEDPSNTDDRFERVRVR---RFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
                          F RV  R     +R     AL L    F   R  +  A+  
Sbjct: 193 SG-------------FSRVTCRCPVVSLRTKTEEALKLLEDVFPQARHNIALAIEQ 235


>gi|15645796|ref|NP_207973.1| hypothetical protein HP1182 [Helicobacter pylori 26695]
 gi|108563546|ref|YP_627862.1| hypothetical protein HPAG1_1121 [Helicobacter pylori HPAG1]
 gi|217033027|ref|ZP_03438497.1| hypothetical protein HPB128_4g7 [Helicobacter pylori B128]
 gi|298735806|ref|YP_003728331.1| hypothetical protein HPB8_310 [Helicobacter pylori B8]
 gi|2314342|gb|AAD08228.1| conserved hypothetical protein [Helicobacter pylori 26695]
 gi|107837319|gb|ABF85188.1| hypothetical protein HPAG1_1121 [Helicobacter pylori HPAG1]
 gi|216945254|gb|EEC23934.1| hypothetical protein HPB128_4g7 [Helicobacter pylori B128]
 gi|298354995|emb|CBI65867.1| conserved hypothetical protein [Helicobacter pylori B8]
 gi|317009796|gb|ADU80376.1| hypothetical protein HPIN_05900 [Helicobacter pylori India7]
          Length = 253

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 28/231 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++    L+ +   F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEM--QNLHPRF--FDSLENAFNNVQA 242


>gi|332673982|gb|AEE70799.1| PP-loop family protein [Helicobacter pylori 83]
          Length = 253

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H +V  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIVYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|317178518|dbj|BAJ56306.1| hypothetical protein HPF30_0209 [Helicobacter pylori F30]
          Length = 253

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H +V  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIVYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|224418112|ref|ZP_03656118.1| hypothetical protein HcanM9_02431 [Helicobacter canadensis MIT
           98-5491]
 gi|253827439|ref|ZP_04870324.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141647|ref|ZP_07803840.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510845|gb|EES89504.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130678|gb|EFR48295.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 257

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 81/209 (38%), Gaps = 26/209 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F   +F A++VD+  R     E  Y+ + C 
Sbjct: 28  GDRVLLGLSGGKDSILLATLLARLKKYAPF-NFEFKALTVDYG-RGG---EYEYIFEYCE 82

Query: 79  RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I + +           N +  +   +     R   +   A       I  AH  DD 
Sbjct: 83  KLGIPYELYRTDIYKILEENRREGSVYCSFCSRMRRGALYSKALEGGFNKIALAHHLDDA 142

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+  M    + A     L  M         L++ RP +  R   I  F+ + NI    D
Sbjct: 143 AESFMMNLTYNGA-----LRSMPPIYKAQNGLYVIRPLIFVRERQIIDFIAKNNIYIAPD 197

Query: 192 PSN------TDDR--FERVRVRRFVRDID 212
             N      +DD+  + R + ++ +++++
Sbjct: 198 -CNCPIMWQSDDKRPYAREKTKQMLKEME 225


>gi|168215907|ref|ZP_02641532.1| ExsB family protein [Clostridium perfringens NCTC 8239]
 gi|182381767|gb|EDT79246.1| ExsB family protein [Clostridium perfringens NCTC 8239]
          Length = 244

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 19/232 (8%)

Query: 4   SPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +   R  ++  +L+     I V +SGG DS+ LL  L +     S  K +  AI+++ 
Sbjct: 6   KLLSKTRQAIKEYNLIEDGDKIAVGLSGGKDSLTLLHILKNYQR-FSPEKFELIAITLNP 64

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114
              + +      + ++C  + +    +         + K +    +     R   ++++A
Sbjct: 65  GGVDNSP-----LHELCKNIDVPFYEIQTDIKEIVFDIKKEKNPCSLCANLRRGALNDNA 119

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    +   H  DD LET+ +      + +G        + ++  NL + RP +    
Sbjct: 120 EKLGCNKVALGHHKDDALETLMLSI----SYEGRINCFSPKSFMHKNNLTLIRPMVFIEE 175

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             IR    + N    ++P   D + +R  ++  +R +D      K   F+ L
Sbjct: 176 SQIRKAAAEYNFPVIKNPCPADGKTKREDMKSLIRSLDKTIPGFKKNLFKSL 227


>gi|118443752|ref|YP_878987.1| hypothetical protein NT01CX_0521 [Clostridium novyi NT]
 gi|118134208|gb|ABK61252.1| conserved hypothetical protein [Clostridium novyi NT]
          Length = 239

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 15/218 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L++     S    +  AI++D      A  +   +  
Sbjct: 18  IQAGDKIAVGLSGGKDSITLLYLLNAY-KRFSPEPFELIAITLD----PGAGADFSEMIR 72

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +C  L + + +   K      + + ++   +     R   +++HAK +    +   H  +
Sbjct: 73  ICKELNVPYYLFKTKIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKVALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G   +   DT L   +L I RP +    ++I++F+   NI   
Sbjct: 133 DAIETLLMSMF----YEGRINTFSPDTYLSRTDLHIIRPMIYIDEQNIKTFIKNSNIPIV 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           E+P   +   +R  ++     ++     LK      L 
Sbjct: 189 ENPCPANGFTKREYMKDLTYSLEKDIPGLKNNLLNSLS 226


>gi|242309060|ref|ZP_04808215.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239524484|gb|EEQ64350.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 255

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/211 (22%), Positives = 83/211 (39%), Gaps = 26/211 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  +     F   +F A++VD+  R     E  Y+ + C 
Sbjct: 28  GDKILLGLSGGKDSILLATLLARLKKYAPF-DFEFKALTVDYG-RGG---EYEYIFEYCE 82

Query: 79  RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I + +           N +  T   +     R   +   A       I  AH  DD 
Sbjct: 83  KLGIPYELYRTDIYKILEENRREGTVYCSFCSRMRRGALYSKALEGGFNKIALAHHLDDA 142

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+  M    + A     L  M         L++ RP +  R   I  F+ + NI    D
Sbjct: 143 AESFMMNLTYNGA-----LRSMPPIYKAKNGLYVIRPLIFVRERQIIDFIAKNNIYIAPD 197

Query: 192 PSN------TDDR--FERVRVRRFVRDIDLH 214
             N      +DD+  F R + ++ +++++++
Sbjct: 198 -CNCPIMWQSDDKRPFAREKTKQMLKEMEMN 227


>gi|308184928|ref|YP_003929061.1| putative PP-loop family ATPase [Helicobacter pylori SJM180]
 gi|308060848|gb|ADO02744.1| putative PP-loop family ATPase [Helicobacter pylori SJM180]
          Length = 253

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 28/231 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++    L+ +   F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEM--QNLHPRF--FDSLENAFNNVQA 242


>gi|332980869|ref|YP_004462310.1| PP-loop domain-containing protein [Mahella australiensis 50-1 BON]
 gi|332698547|gb|AEE95488.1| PP-loop domain protein [Mahella australiensis 50-1 BON]
          Length = 240

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 88/238 (36%), Gaps = 21/238 (8%)

Query: 4   SPIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SV 58
             +  VR  V+          I V VS G DS+ LL A+  + S   F   +F AI  +V
Sbjct: 9   RILGRVRKAVQDFDMIDEGDRIAVGVSAGKDSLTLLYAMSRLAS---FYPKRFEAIGITV 65

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISE 112
           D      A      + + C RL + + VV         + K +    +     R  +++ 
Sbjct: 66  DQGF-PGADF--ALIQEFCDRLGVEYHVVPSNIKEVVFDIKKEHNPCSLCANLRRGMLNT 122

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+ +    +  AH  DD +ET ++        +G          L    + + RP +  
Sbjct: 123 AARRLGCNKVALAHHRDDAIETFFLSLF----YEGRIYCFDPKVYLTRSGITVIRPLIYI 178

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           +  + +    +       +P   + + +R  ++RFV  +       K   F  +R K+
Sbjct: 179 KEAETKGMARRLQFPVITNPCPANGKTQREEMKRFVDGLSAFGPQTKDLVFNAIRRKL 236


>gi|313144378|ref|ZP_07806571.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129409|gb|EFR47026.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 274

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 28/231 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K +F A++VD+  R     E  Y+ + C 
Sbjct: 47  GDKVLLGLSGGKDSILLATILAYMQRHAPF-KFEFKALTVDYG-RGG---EYEYIFEYCE 101

Query: 79  RLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I + +          +N +  T   +     R   +   A       +  AH  DD 
Sbjct: 102 KLGIPYELYRTDIYEILEQNKREGTIYCSFCSRMRRGALYSKALEYGYNKLALAHHLDDA 161

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+ +M    + A +      M      +  L + RP +  R   I  F+    I    D
Sbjct: 162 AESFFMNLTYNGAMRS-----MPPIYRAENGLEVIRPLIFMRERQIIDFIASNGIYIAPD 216

Query: 192 ---PSNTDDR----FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
              P N  D     + R   ++F+++++          F+ L+   +N  A
Sbjct: 217 CNCPINWLDSDKKPYAREATKQFLKNMESENP----NFFKSLKNAFSNIHA 263


>gi|224437935|ref|ZP_03658877.1| hypothetical protein HcinC1_08178 [Helicobacter cinaedi CCUG 18818]
          Length = 303

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 28/231 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K +F A++VD+  R     E  Y+ + C 
Sbjct: 76  GDKVLLGLSGGKDSILLATILAYMQRHAPF-KFEFKALTVDYG-RGG---EYEYIFEYCE 130

Query: 79  RLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I + +          +N +  T   +     R   +   A       +  AH  DD 
Sbjct: 131 KLGIPYELYRTDIYEILEQNKREGTIYCSFCSRMRRGALYSKALEYGYNKLALAHHLDDA 190

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+ +M    + A +      M      +  L + RP +  R   I  F+    I    D
Sbjct: 191 AESFFMNLTYNGAMRS-----MPPIYRAENGLEVIRPLIFMRERQIIDFIASNGIYIAPD 245

Query: 192 ---PSNTDDR----FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
              P N  D     + R   ++F+++++          F+ L+   +N  A
Sbjct: 246 CNCPINWLDSDKKPYAREATKQFLKNMESENP----NFFKSLKNAFSNIHA 292


>gi|28572333|ref|NP_789113.1| hypothetical protein TW171 [Tropheryma whipplei TW08/27]
 gi|61217337|sp|Q83I94|TILS_TROW8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|28410464|emb|CAD66850.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
          Length = 407

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 7/146 (4%)

Query: 7   ESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
            + R  + +L    H   +L+A+SGG DS+  ++    V+   +    +  A+ VDH L+
Sbjct: 13  NARRAMLNTLPADLHNQLVLIALSGGRDSLAAMVIASWVIPRLNG---RVGAVVVDHGLQ 69

Query: 64  ETAKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           E +      V     +  +    +     S+   G  A+AR ARYA   +  +   A  I
Sbjct: 70  ENSARIADEVRIRAEQFALNPILIKRVSPSRVSAGPEASARIARYAAFYDTLEETKAYAI 129

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM 148
           + AHT DDQ ETV +   R      +
Sbjct: 130 ILAHTLDDQAETVLLGLMRGSGPSSL 155



 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
             RPFL   R +         + +  DP N D RF RVR+R  V  +  + +   +K   
Sbjct: 238 FIRPFLDITRHETGKICEFYGLDYWNDPHNEDVRFSRVRIRHNVMPVLENEIGPGVKYAL 297

Query: 225 DLRVK--------VNNAVAMLIPKYLTVHMRSIIAISQDILNI-DSTLLFYLLRVSA-AI 274
               K        +++    L+ +  +      I +  + L      +   ++R++A   
Sbjct: 298 SRTAKLAQLDTEYLDHLSNELLDEIASKESDWSIRLPINTLQKTPVPIRLRVIRLAALQY 357

Query: 275 CGGQISLPGYRSMERVM 291
               +S    R +ER++
Sbjct: 358 FTVSLSFKHTRQIERLL 374


>gi|20807962|ref|NP_623133.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|20516534|gb|AAM24737.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
          Length = 235

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 19/237 (8%)

Query: 4   SPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  +R  V+          I V VSGG DS+ LL  LH +   + F  IKF  + +  
Sbjct: 3   EILGKIRRAVQDFEMIQEGDAIAVGVSGGKDSITLLYGLHLL---KRFYPIKFEVMGL-- 57

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEH 113
            L       +   + + C    I   V   +  K       +    +     R   +++ 
Sbjct: 58  MLSLGFENFDPTPIKNFCEEKGIPFFVKHTEIKKIVFDYRKEKNPCSLCANLRRGALNDF 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK      +  AH +DD + T  M         G   +    T L    + + RP +  R
Sbjct: 118 AKEKGCNKVALAHHYDDLIVTFMMNLF----YNGRLHTFEPVTFLDRSKITLIRPLIYVR 173

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            +++RS + + N+   E+P        R  +   +R+++     L  + F  ++  V
Sbjct: 174 EKEVRSAVKKNNLPVVENPCPMAGNTTRHSIENLIRNLEKEIPELDKRIFTAIKKDV 230


>gi|208435075|ref|YP_002266741.1| hypothetical protein HPG27_1125 [Helicobacter pylori G27]
 gi|254779731|ref|YP_003057837.1| putative PP-loop family ATPase [Helicobacter pylori B38]
 gi|208433004|gb|ACI27875.1| hypothetical protein HPG27_1125 [Helicobacter pylori G27]
 gi|254001643|emb|CAX29794.1| Putative PP-loop family ATPase [Helicobacter pylori B38]
          Length = 253

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 28/231 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++    L+ +   F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEM--QNLHPRF--FDSLENAFNNVQA 242


>gi|330801783|ref|XP_003288903.1| hypothetical protein DICPUDRAFT_79671 [Dictyostelium purpureum]
 gi|325081048|gb|EGC34579.1| hypothetical protein DICPUDRAFT_79671 [Dictyostelium purpureum]
          Length = 569

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 8/198 (4%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV--C 77
            +++++ SGGSDS+ LL  L   +  +   +I    I+ DH ++     E+  +      
Sbjct: 124 KNVILSCSGGSDSILLLYLLKQWIK-KGKKEITVRVITFDHKVQAEDIGEICKIIKKIIG 182

Query: 78  SRLRIAHSVVSWKNSKP---QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              ++    V   N KP   + GL    R+ RY  +   ++     ++       D  E+
Sbjct: 183 RSTKVFSHEVITLNEKPLEFKNGLQQKLRDQRYKSLVSISEDNKENIVFYGTNLGDSFES 242

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
              R        G  LSG+ + +    N  + RP +   + DI +F   + I +  DP+N
Sbjct: 243 FIHRVSSKSGLDG--LSGIREELKLSQNTTVYRPLIEISKNDITAFCNGKKIGFYSDPTN 300

Query: 195 TDDRFERVRVRRFVRDID 212
            D  F R   R  +   +
Sbjct: 301 LDLSFTRNLNRSLINQFE 318


>gi|210135340|ref|YP_002301779.1| PP-loop family protein [Helicobacter pylori P12]
 gi|210133308|gb|ACJ08299.1| PP-loop family protein [Helicobacter pylori P12]
          Length = 253

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 28/247 (11%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  +       + +     IL+ +SGG DS+ L   L  +     F K  F A++V + L
Sbjct: 10  LHIVGKTNAAYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL 68

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAK 115
                ++++++SD+C    I H ++  + +       + ++   +     R   +   A 
Sbjct: 69  ----GEDLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKAL 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +  AH  DD +E+ +M    + +     L  M      +  L + RP ++ R  
Sbjct: 125 EEGYNKVAIAHHLDDAVESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREA 179

Query: 176 DIRSFLLQRNISWCED-------PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
               F+  +NI    D       P++      R+  + F++++    L+ +   F  L  
Sbjct: 180 SSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEM--QNLHPRF--FDSLEN 235

Query: 229 KVNNAVA 235
             NN  A
Sbjct: 236 AFNNVQA 242


>gi|19553892|ref|NP_601894.1| ATPase [Corynebacterium glutamicum ATCC 13032]
 gi|62391535|ref|YP_226937.1| PP family ATPase [Corynebacterium glutamicum ATCC 13032]
 gi|61216526|sp|Q6M2E8|TILS_CORGL RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|41326877|emb|CAF20721.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           [Corynebacterium glutamicum ATCC 13032]
          Length = 314

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 64/276 (23%), Positives = 106/276 (38%), Gaps = 36/276 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL   ++VR +++      H+ + +SGG DS+ L+ A+ +  S       + +AI +DH 
Sbjct: 17  FLELRKAVRPYLKE-----HVHIGLSGGPDSLALVAAVLAEKS-------QVTAICIDHN 64

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           L+  + +     + +   +  A ++V      P  G+ AAA           A       
Sbjct: 65  LQTGSAEVTHNAAAMARHMG-AQAIVKSIEVAPGEGMEAAA-----REARYAAFAQLTDE 118

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I  AHT DDQ ET  +   R         +GM D       L I RP L  RR       
Sbjct: 119 IWVAHTMDDQAETYLLGGLRGNP------AGMKDASRRPE-LSIIRPLLGARRAHTHGAC 171

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNA 233
           ++  +    DP N DD F RV +R  V  +         +  L L  ++  +    V   
Sbjct: 172 VELGLKPWHDPQNFDDAFRRVAIRNQVIPLLAQVHGGDPVPGLALAARRAVEDAEVVEGD 231

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
           V     + L       + ++ +   +   +L   LR
Sbjct: 232 VE---KRRLEWQDGFPVTLAGEPTGLRRRMLADFLR 264


>gi|296138291|ref|YP_003645534.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM
           20162]
 gi|296026425|gb|ADG77195.1| tRNA(Ile)-lysidine synthetase [Tsukamurella paurometabola DSM
           20162]
          Length = 312

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 108/311 (34%), Gaps = 18/311 (5%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L    +V+ +      P+ + VAVSGG DS        ++L+      ++  A+ VDH L
Sbjct: 9   LQIRRAVQHWAARYGAPSTVAVAVSGGPDS-------LALLAGAVAAGLEPVALVVDHGL 61

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +  +       +          + V         G  AAAR ARY  +  H    +   +
Sbjct: 62  QPDSAATAARAAGQARSAGARRADVLTVIVDAAGGPEAAARTARYRALDAHR---DGLPV 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  HT DDQ ETV +   R    +   L+GM             RP L  RR   R    
Sbjct: 119 LLGHTLDDQAETVLLGLGRGSGAR--SLAGMAAWAEPYG-----RPLLGVRRAVTRQACA 171

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +  +   +DP NTD R+ RVR+R  V  +    L   + +               +    
Sbjct: 172 ELGLDPWDDPHNTDARYTRVRLRHEVLPLLEEVLGGGVAQALARTAASLRDDNDALDALT 231

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
                  + +  DI ++   L    LR   A  G +     + +    ++    G+    
Sbjct: 232 PAPSGDELPV-ADIEHLPPALRRRALRAWLAGRGARALTAAHLAAVDALVSDWHGQGPAA 290

Query: 303 SIGRVVIDRRA 313
             G     R  
Sbjct: 291 VPGGSAGRRLQ 301


>gi|315587072|gb|ADU41453.1| PP-loop family protein [Helicobacter pylori 35A]
          Length = 253

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNIQA 242


>gi|317182435|dbj|BAJ60219.1| hypothetical protein HPF57_1145 [Helicobacter pylori F57]
          Length = 253

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|222530555|ref|YP_002574437.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457402|gb|ACM61664.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 235

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 90/237 (37%), Gaps = 19/237 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F    ++V  F   +     I V VS G DS+ +L  L  +       K +  AI+VD  
Sbjct: 5   FSKVRKAVEDF-NMIEEGDKIAVGVSAGKDSLTMLYTLSFLRKFYP-KKFEVVAITVDMG 62

Query: 62  LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113
                 + + ++   + C ++ +   +V         + + +    +     R  +++  
Sbjct: 63  F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK++    +   H  DD +ET ++        +G        T L    +   RP +  +
Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITTIRPMIYLK 173

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             D+RS   +  +    +P   + +  R R++ FV+++       K   F  ++  +
Sbjct: 174 EHDLRSAAKKLELPVITNPCPANGKTNRQRMKEFVKNLKQFHPATKDLVFNAIKRNI 230


>gi|218883803|ref|YP_002428185.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765419|gb|ACL10818.1| Predicted ATPase of the PP-loop superfamily [Desulfurococcus
           kamchatkensis 1221n]
          Length = 339

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 97/243 (39%), Gaps = 37/243 (15%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   ++      R L    HI+VAVSGG DS+ LL  LH +   R     + +A+ VD  
Sbjct: 31  FEKKVKKTIRKYRMLGKNEHIIVAVSGGKDSIALLHVLHKL--SRKMPGWRVTAVLVDEG 88

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREA-------------R 106
           ++   +  V  +    ++ ++ + +VS+K     +        R               R
Sbjct: 89  IKGYREKTVENLVAYAAKNKVDYHIVSFKEYIGASLDEIVEKGRARGLPYLPCSYCGVFR 148

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI- 165
             ++++ A+ +  T+I TAH  DD ++T  M    +  +K   +  +   I  +   +I 
Sbjct: 149 RYVLNKAARRLGGTVIATAHNLDDVIQTFLMNIISNSVDK---IYKLTPVISDEEGGFIK 205

Query: 166 -SRPFLRCRREDIRSFLLQRNI--------SWCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
             +PF     ++   + L   +         + E     + RF    +R+ + +++    
Sbjct: 206 RIKPFYTVLEKESALYALLNGLIEPEYVQCPYAE----YNIRFT---IRKLINELEDKHP 258

Query: 217 YLK 219
            +K
Sbjct: 259 GVK 261


>gi|154495895|ref|ZP_02034591.1| hypothetical protein BACCAP_00175 [Bacteroides capillosus ATCC
           29799]
 gi|150274778|gb|EDN01834.1| hypothetical protein BACCAP_00175 [Bacteroides capillosus ATCC
           29799]
          Length = 257

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 86/239 (35%), Gaps = 17/239 (7%)

Query: 1   MFLSPIESVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M    +  VR  V    ++ P   I V VSGG DS+ LL  L  + +          A +
Sbjct: 1   MNTKLLSYVRRCVEDYDMIKPGDRIAVGVSGGKDSITLLAGLAGLRTFYPVP-FTVEAFT 59

Query: 58  VDHCLRETAKDEVRY--VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYAL 109
           +D        + + +  V++ C  L + ++++  +      + + +    +   + R   
Sbjct: 60  LDMG-HVDGGEGMDFTPVAEFCKELDVPYTILPSEIHHIIFDLRKEKNPCSMCAKMRRGA 118

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +           I   H FDD +ET ++        +G        T L   ++   RP 
Sbjct: 119 LHNALMDHGIHKIALGHHFDDAVETFFLSLF----YEGRISCFQPVTYLDRTDIVQIRPL 174

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
           L      IR+   +       +P   D   +R  ++  VR +D     LK +    ++ 
Sbjct: 175 LYLSEASIRTIAAKEGYPVVHNPCPADGFTKRQEIKELVRSLDKQYPGLKQRVLGAMQR 233


>gi|15835107|ref|NP_296866.1| hypothetical protein TC0489 [Chlamydia muridarum Nigg]
 gi|270285278|ref|ZP_06194672.1| hypothetical protein CmurN_02488 [Chlamydia muridarum Nigg]
 gi|270289294|ref|ZP_06195596.1| hypothetical protein CmurW_02553 [Chlamydia muridarum Weiss]
 gi|301336674|ref|ZP_07224876.1| hypothetical protein CmurM_02540 [Chlamydia muridarum MopnTet14]
 gi|7190530|gb|AAF39335.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 259

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S I    +    L    HI VA+SGG DS+ LL+ L ++ S R F ++   AI +     
Sbjct: 19  SLIRKALYTYAMLEKHTHIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A     Y+S +C ++++    +     + +          R  L+ + AK++ AT + 
Sbjct: 78  CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDAAKSVGATAVA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +    E IR F  +
Sbjct: 137 FGHHRDDVIQTALMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEELIRKFAKE 192

Query: 184 RN 185
             
Sbjct: 193 SG 194


>gi|217034263|ref|ZP_03439681.1| hypothetical protein HP9810_2g42 [Helicobacter pylori 98-10]
 gi|216943323|gb|EEC22785.1| hypothetical protein HP9810_2g42 [Helicobacter pylori 98-10]
 gi|261838507|gb|ACX98273.1| hypothetical protein KHP_1079 [Helicobacter pylori 51]
 gi|261839907|gb|ACX99672.1| hypothetical protein HPKB_1114 [Helicobacter pylori 52]
 gi|297380364|gb|ADI35251.1| Hypothetical protein HPV225_1210 [Helicobacter pylori v225d]
          Length = 253

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|188527970|ref|YP_001910657.1| hypothetical protein HPSH_06125 [Helicobacter pylori Shi470]
 gi|188144210|gb|ACD48627.1| hypothetical protein HPSH_06125 [Helicobacter pylori Shi470]
 gi|308063965|gb|ADO05852.1| hypothetical protein HPSAT_05705 [Helicobacter pylori Sat464]
 gi|317177929|dbj|BAJ55718.1| hypothetical protein HPF16_1121 [Helicobacter pylori F16]
 gi|317180912|dbj|BAJ58698.1| hypothetical protein HPF32_1116 [Helicobacter pylori F32]
          Length = 253

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|121713738|ref|XP_001274480.1| PP-loop family protein [Aspergillus clavatus NRRL 1]
 gi|119402633|gb|EAW13054.1| PP-loop family protein [Aspergillus clavatus NRRL 1]
          Length = 580

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 92/323 (28%), Gaps = 57/323 (17%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WK 90
           M L      + + +    ++ +A  VDH  RE +  E R V+   + L +   ++   W 
Sbjct: 1   MALAYLCKQLETQKLVPDLRVTAFVVDHKAREESSREARTVAGWLADLGLDAQILELEWP 60

Query: 91  NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS---QRDYAEKG 147
           +S   +     AR  R+  +       +   ++  H  DD +ET   R     R     G
Sbjct: 61  SSANVSAFETHARRLRFQALGRACADRDIPALLMGHHQDDNVETTLWRLSCGARGAGLAG 120

Query: 148 M----------GLSGMCDTILYD------------------------------------- 160
           +          GL G+ ++                                         
Sbjct: 121 IPAVARIPECHGLYGVSESGSRRTLLAGRGPAPQEEKEHGDSSTTSTTSSGKDGHRHDRI 180

Query: 161 ----LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHA 215
                 + I RP L   +  + +      + +  DP+N D     R  +R  +    L  
Sbjct: 181 TMAAGGILICRPLLAFPKSALLATCHAHRVPFVSDPTNFDPTLTPRNAIRALLASSALPR 240

Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC 275
                      R         L      +   S++  +    ++D      L  + AA  
Sbjct: 241 ALHPPSILSLTRASHALLDTALEHSNALLRQCSLLDFNAAAASMDIAFPGPLTPLPAAAA 300

Query: 276 GGQISLPGYRSMERVMLFLKSGK 298
             QI     R +  ++       
Sbjct: 301 DPQIHALTLRRITDLIAPHPQNH 323


>gi|291277171|ref|YP_003516943.1| PP-loop family protein [Helicobacter mustelae 12198]
 gi|290964365|emb|CBG40215.1| Putative PP-loop family protein [Helicobacter mustelae 12198]
          Length = 254

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 17/176 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K +F A+++ + L     ++  Y++++C 
Sbjct: 27  GDKVLLGLSGGKDSILLACILERMQRHAPF-KFEFKAVTIHYGL----GEDFSYLTEICQ 81

Query: 79  RLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           R  I H +          +  +  +   +     R   +   AK +    +  AH  DD 
Sbjct: 82  RQGIPHEIYHTSIAETIREKRREGSSYCSFCSRMRRGALYNKAKELGYNKVAIAHHLDDA 141

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            E+ +M    + +     L  M      +  + + RP +  R      F+  +NI 
Sbjct: 142 AESFFMNLTYNGS-----LRSMPPIYRAENGIQVIRPLIHIRERQSIDFVQSQNIK 192


>gi|145296694|ref|YP_001139515.1| hypothetical protein cgR_2599 [Corynebacterium glutamicum R]
 gi|140846614|dbj|BAF55613.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 297

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 125/328 (38%), Gaps = 43/328 (13%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +   ++VR +++      H+ + +SGG DS+ L+ A+ +  S       + +AI +DH L
Sbjct: 1   MELRKAVRPYLKE-----HVHIGLSGGPDSLALVAAVLAEKS-------QVTAICIDHNL 48

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +  + +     + +   +  A ++V      P  G+ AAA           A       I
Sbjct: 49  QAGSAEVTHNAAAMARHMG-AQAIVKSIEVAPGEGMEAAA-----REARYAAFAQLTDEI 102

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AHT DDQ ET  +   R         +GM D       L I RP L  RR       +
Sbjct: 103 WVAHTMDDQAETYLLGGLRGNP------AGMKDASRRPE-LSIIRPLLGARRAHTHGACV 155

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAV 234
           +  +    DP N DD F RV +R  V  +         +  L L  ++  +    V   V
Sbjct: 156 ELGLKPWHDPQNFDDAFRRVAIRNQVIPLLAQVHGGDPVPGLALAARRAVEDAEVVEGDV 215

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL 294
                + L       +A++ +   +   +L   LR        +       +++R++   
Sbjct: 216 E---KRRLEWQDGFPVALAGEPTGLRRRMLADFLRGEGIAVSSRK----LAAIDRLLTDW 268

Query: 295 KSG---KRGCVSIGRVVIDRRANFLWIT 319
           +       G    GR+ + R++  L IT
Sbjct: 269 RGQGGVAVGKSDNGRLEVVRQSGKLKIT 296


>gi|152993337|ref|YP_001359058.1| hypothetical protein SUN_1754 [Sulfurovum sp. NBC37-1]
 gi|151425198|dbj|BAF72701.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 265

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 16/198 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L  I       R +     +LV +SGG DS+ L+  L  +     F + +F A +V + 
Sbjct: 18  LLKVIGKTNAEFRLIGEGDRVLVGLSGGKDSLALVHGLKHIQRHAPF-RFEFEACTVKYG 76

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHA 114
           + +   D   ++S  C    I H+V       +S    +  +   +     R   +   A
Sbjct: 77  MPDEHYD---FLSKHCEEYGIKHTVYDTNIFEISHNTIRENSSFCSYFSRMRRGALYTFA 133

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      +   H FDD +E+ +M    +   + +                + RP ++ R 
Sbjct: 134 EQGGFNKVALGHHFDDTVESFFMNMFYNGTMRALAPIYKTG-----RGFHLIRPLIQARE 188

Query: 175 EDIRSFLLQRNISWCEDP 192
             +R+F    N+    D 
Sbjct: 189 SQLRAFADDNNLQVIGDE 206


>gi|168182078|ref|ZP_02616742.1| PP-loop family protein [Clostridium botulinum Bf]
 gi|182674947|gb|EDT86908.1| PP-loop family protein [Clostridium botulinum Bf]
          Length = 249

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 18/213 (8%)

Query: 9   VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           VR  +   +++ P   I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L   
Sbjct: 16  VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119
              ++  +   C +  I   +          N + +    +   + R   +   +K+I A
Sbjct: 72  -DMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLIRVSKSIGA 130

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD +ET++M   +     G   S        D  + I RP +  R + I+ 
Sbjct: 131 TKVALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKD 186

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + N+   + P   D +  R  ++  +  ++
Sbjct: 187 MVKKYNLPVVKSPCPEDKKTTREEMKNLMFKLE 219


>gi|163814067|ref|ZP_02205459.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759]
 gi|158450516|gb|EDP27511.1| hypothetical protein COPEUT_00220 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 15/222 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++ P   I + +SGG DS+ LL A+  +         +  AI+VD         E   +
Sbjct: 18  NMISPGDRIAIGISGGKDSLTLLYAMAKLKKFYPIP-FELEAITVDLGFEGFDTSE---L 73

Query: 74  SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            + C  L + +SV   +      + + ++   +     R    ++ A ++    I  AH 
Sbjct: 74  REYCESLDVRYSVCKTQIGEIIFDYRKESNPCSLCSRMRKGAFNDCAVSLGCNKIAYAHH 133

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +++  M        +G   +    T L    + + RP +     +IR+F     + 
Sbjct: 134 KDDVIDSFLMSML----YEGRIHTFSPVTHLEKTGVTLIRPLIYVLEGEIRAFARANALP 189

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
            C++P   D   +R   +  + ++ +    +K + F  +   
Sbjct: 190 VCKNPCPADGVTKRQESKDIIDELKVRVPDVKDRIFSSIEGA 231


>gi|78777588|ref|YP_393903.1| hypothetical protein Suden_1391 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498128|gb|ABB44668.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 260

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 75/205 (36%), Gaps = 17/205 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S +         +     ILV +SGG DS+ L+ AL      R+  K +F A+++ + +
Sbjct: 18  MSKLGKTNALFNLIEEGDKILVGLSGGKDSLTLIHALKE-QQRRAPFKFEFIAVTISYGM 76

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAK 115
            E        +   C   +I + V       ++    +  +   +     R   +   A+
Sbjct: 77  GEN----YEKLKAHCKEHKIDYEVYDTNIYDIAEDKIRKNSSFCSFFSRMRRGSLYSAAQ 132

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +   H  DD  E+ +M    +       L  +      D  + + RP +  R  
Sbjct: 133 KYGCNKVALGHHMDDAAESFFMNFIYNGQ-----LRSLAPKYKADRGVIVIRPLIEMRER 187

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE 200
            + +F+ + NI    D +    RF+
Sbjct: 188 QLEAFVRENNIETIGDEACPSMRFD 212


>gi|147679000|ref|YP_001213215.1| ATPase [Pelotomaculum thermopropionicum SI]
 gi|146275097|dbj|BAF60846.1| predicted ATPase [Pelotomaculum thermopropionicum SI]
          Length = 250

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 78/216 (36%), Gaps = 15/216 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + V +SGG DS  LL ALH ++S  +  + +  A+ VD         ++  + + C
Sbjct: 25  AGDRVAVGMSGGKDSTSLLHALH-LISRSAPVRFELEAVFVDLGW----PADISLLEEFC 79

Query: 78  SRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               ++  VV          ++      A     R       A  +    +   H  DD 
Sbjct: 80  RLRNVSLHVVKTGIAEIVFEARKGENPCALCAHLRRGAFHGKALELGCNKVALGHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET +M         G   +    T L    L + RP +    EDIR+++    +    +
Sbjct: 140 IETFFMSLF----YTGQLRTFSPCTFLDRTGLTMIRPLVYLPAEDIRTWVEMEGLPAITN 195

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P     + +R   R  V  +      LKM+    L+
Sbjct: 196 PCPASGKTKRQEARELVAWLAGRYPDLKMRFLTALQ 231


>gi|323140469|ref|ZP_08075397.1| putative tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp.
           YIT 12067]
 gi|322415037|gb|EFY05828.1| putative tRNA(Ile)-lysidine synthetase [Phascolarctobacterium sp.
           YIT 12067]
          Length = 267

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 82/246 (33%), Gaps = 23/246 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRY 72
           L     ILV +SGG DSM L   L  +    S      +  +V+         A+ E   
Sbjct: 26  LQPGDRILVGLSGGKDSMLLTAMLAEI-KKYSPIPFDLACYTVNGMFAPNFPKAELEA-- 82

Query: 73  VSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
               C++  + H            K            R A  +  A+ +    +  AH  
Sbjct: 83  ---FCAQFGLTHYSDDVDVMAAHEKKGGSPCFTCAYFRRAATNRRAQELGFNKVALAHHN 139

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET +M        +    + +  T L    + + RP L  R ++IR  + +  +  
Sbjct: 140 DDAVETFFMNLVTSGQLR----TFLPVTPLSRSGITVLRPLLYYREQEIRELVAKLGLKP 195

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV------AMLIPKYL 242
            ++P   D    R  ++  +  +D     +       +R      +        L+ K+ 
Sbjct: 196 IKNPCPYDGHTMRQDIKEHIAALDAQYPEIYEHLAAAMRDSDRQELWPPKPGKELLQKFH 255

Query: 243 TVHMRS 248
           T   R 
Sbjct: 256 TFWGRG 261


>gi|237753368|ref|ZP_04583848.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375635|gb|EEO25726.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 259

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 80/209 (38%), Gaps = 26/209 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F   +F A++VD+  R     E  Y+ + C 
Sbjct: 30  GDKVLLGLSGGKDSILLATLLARLKRYAPF-NFEFKALTVDYG-RGG---EYEYIFEYCE 84

Query: 79  RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  I + +           N +  +   +     R   +   A       +  AH  DD 
Sbjct: 85  KHGIPYELYRTDIYKILEENKREGSVYCSFCSRMRRGALYTKALEGGYNKLALAHHLDDA 144

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+  M    + A     L  M      +  +++ RP +  R   I  F+ + NI    D
Sbjct: 145 AESFMMNLTYNGA-----LRSMPPIYKAENGIFVIRPLIFVRERQIIDFIAKNNIYIAPD 199

Query: 192 PSN------TDDR--FERVRVRRFVRDID 212
             N       DD+  F R + ++ +++++
Sbjct: 200 -CNCPIMWQKDDKRPFAREKTKQMLKEME 227


>gi|116753888|ref|YP_843006.1| PP-loop domain-containing protein [Methanosaeta thermophila PT]
 gi|116665339|gb|ABK14366.1| PP-loop domain protein [Methanosaeta thermophila PT]
          Length = 326

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 21/229 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
              + + R F R       + VA+SGG DS  LL  L  + S R    I+  A+ VD  +
Sbjct: 36  RETLRTYRIFSR----GGRVAVALSGGKDSSVLLYTLKRIFSHRR--DIELIALMVDEGI 89

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-----------RYALIS 111
               +D ++  + +  RL + H  +S++     T    A R+            R  L++
Sbjct: 90  SGYREDTLQNAAALADRLDVPHITLSFREEFGITIDEIAERDLHQAPCTYCGVMRKHLLN 149

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A+ +NA  + T H  DD+ +T+ +   R   ++   L  +      +  ++  +P  R
Sbjct: 150 KRARELNAIALATGHNLDDEAQTILLNYLRGDVDR---LFRLLPKRPKEGLVYRIKPLRR 206

Query: 172 CRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
               ++  + +   I            R  R+ V+  + +I+      K
Sbjct: 207 IPEREVAIYAMIHGIFPRGHGSCPNVPRAMRLEVKNILNEIEARHPGTK 255


>gi|312621376|ref|YP_004022989.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201843|gb|ADQ45170.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 235

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 89/237 (37%), Gaps = 19/237 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F    ++V  F   +     I V VS G DS+ +L  L  +       K +  AI+VD  
Sbjct: 5   FSKVRKAVEDF-NMIEEGDKIAVGVSAGKDSLTMLYTLSFLRKFYP-KKFEVVAITVDMG 62

Query: 62  LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113
                 + + ++   + C ++ +   +V         + + +    +     R  +++  
Sbjct: 63  F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK++    +   H  DD +ET ++        +G        T L    +   RP +  +
Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIHCFSPKTYLDRTQITTIRPMIYLK 173

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             D+RS   +  +    +P   + +  R R++ FV+ +       K   F  ++  +
Sbjct: 174 EHDLRSAAKKLELPVITNPCPANGKTNRQRMKEFVKSLKQFHPATKDLVFNAIKRNI 230


>gi|322707722|gb|EFY99300.1| PP-loop family protein [Metarhizium anisopliae ARSEF 23]
          Length = 653

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 18/164 (10%)

Query: 2   FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------K 52
           F   +E+V   RF       P  + +A+SGG DSM +     +++      KI       
Sbjct: 20  FRDAVEAVCPPRFPAVRYARPRRVALAISGGVDSMAMAFLFSNLIRAHRGIKIADNPTES 79

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQT-------GLMAAAR 103
              + VDH LR  +  E   V+    +L +      ++WK+             + + AR
Sbjct: 80  AFGVIVDHRLRPESTLEAVKVAQELKKLGLKAVTKPLNWKDVSRHGQDPSSLPNMESVAR 139

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147
             RY ++    + +NAT +  AH  DDQ ETV MR    +  +G
Sbjct: 140 TMRYRMLGSTCRYLNATSLFFAHHRDDQYETVLMRYMSGHQYRG 183



 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRR----FVRDIDLH 214
           D  + I RP L   ++ + +      I W EDP+N D     R  +R      +      
Sbjct: 281 DGGIMIYRPLLEFDKDRLIATCEANKIKWFEDPTNADPTLTPRNAIRHMDHSLLPPELRK 340

Query: 215 ALYLKMKKFQDLRVKVNNAVA 235
              L M +    R +V  A A
Sbjct: 341 EAILDMSREAKRRTRVEEAEA 361


>gi|224000705|ref|XP_002290025.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220975233|gb|EED93562.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 999

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/302 (17%), Positives = 104/302 (34%), Gaps = 31/302 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSD-------RSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +V++SGG DSM +  AL  +          +    ++   I +D+  R  +  E  YV  
Sbjct: 530 IVSLSGGVDSMVIASALAYLRDTEAARCNLKPDKVLRIICIHIDYANRPESGAEAAYVGR 589

Query: 76  VCSRLRIAHSVVSWKNSKPQTGL----MAAAREAR---YALISEHAKTINAT------LI 122
            C ++                         ARE R   Y      A+ I          +
Sbjct: 590 YCHQIGAQFVCRKIDEVTRGVNARDDYERIAREIRFGLYRQYCGEARRIGGQESDIGIGV 649

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           M  H   D  E V   + +      + LSGM  ++  +  + + RP L   +  I  +  
Sbjct: 650 MLGHHRGDLRENVISNAHKGCGP--LDLSGMT-SVSKNDGVTLFRPLLPLEKTFIFDYAH 706

Query: 183 QRNISWCEDPS-NTDDRFE-RVRVRRFVRDI----DLHALYLKMKKFQDLRVKVNNAVAM 236
              + + +D + N   R + R R+   + +I     +  L    ++  D R  +   V  
Sbjct: 707 TFGVPYFKDTTPNWSTRGKLRNRLLPLLEEIYGEGSMDNLSSLAEESDDARALIQQTVMG 766

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKS 296
              + +      I+  +    +       ++LR    + G    +   +S+E  +  + S
Sbjct: 767 PFMEKVKYSTMGIVFETIPWKDCGLFFWKFVLR--NVLHGAGRGMFSDKSVESFLDRIAS 824

Query: 297 GK 298
            K
Sbjct: 825 TK 826


>gi|20090822|ref|NP_616897.1| hypothetical protein MA1974 [Methanosarcina acetivorans C2A]
 gi|19915889|gb|AAM05377.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 302

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 104/276 (37%), Gaps = 26/276 (9%)

Query: 2   FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+  +E  ++  VR   S+     I VA+SGG DS   L  +H +L +R    I+  A+S
Sbjct: 28  FIEDVERKIKLTVRKDYSIKKNDVIAVALSGGKDSSVALYVMHKILGNR--PDIQIVAVS 85

Query: 58  VD---HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--RE-------- 104
           +D   H  R  +   +     +   L + H + S+K+    T    AA  RE        
Sbjct: 86  IDEGIHGYRPHS---LELAKKLTETLGVRHIIKSFKDEHGVTMDELAAMDREKGTCSYCG 142

Query: 105 -ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             R ++++  A  I AT ++T H  DD+ +T+ +   R   E+   +  +      +  +
Sbjct: 143 VLRKSILNRVALEIGATKLVTGHNLDDEAQTILLNHFRGDMER---MVRLAPPAAVEGLV 199

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
             ++P      +++  + L  ++              R  +R  + + +      K    
Sbjct: 200 LRAKPLRNIPEKEVALYALINSLPVDFSECPYAGEALRGEIRELLNNFETGHPGTKYSLL 259

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
           +     V      L P  +          ++DI   
Sbjct: 260 RGFDKLVGALAKELPPAKIEKCRICGDTCTEDICQA 295


>gi|207108367|ref|ZP_03242529.1| hypothetical protein HpylH_01795 [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 236

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 92/230 (40%), Gaps = 25/230 (10%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  +       + +     IL+ +SGG DS+ L   L  +     F K  F A++V + L
Sbjct: 10  LHIVGKTNAAYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL 68

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAK 115
                ++++++SD+C    I H ++  + +       + ++   +     R   +   A 
Sbjct: 69  ----GEDLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKAL 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +  AH  DD +E+ +M    + +     L  M      +  L + RP ++ R  
Sbjct: 125 EEGYNKVAIAHHLDDAVESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREA 179

Query: 176 DIRSFLLQRNISWCED-------PSNTDDRFERVRVRRFVRDI-DLHALY 217
               F+  +NI    D       P++      R+  + F++++ +LH  +
Sbjct: 180 SSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF 229


>gi|108796880|ref|YP_636178.1| hypothetical protein RF62 [Pseudendoclonium akinetum]
 gi|122217891|sp|Q3ZJ89|TILS_PSEAK RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|56159578|gb|AAV80602.1| hypothetical protein RF62 [Pseudendoclonium akinetum]
          Length = 600

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 9/148 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++ IE    F  + +    +L+A SGG DS  LL   + +     F   K  A+  +HC
Sbjct: 10  LINFIEKSNLFTTNKIRDKKLLIAFSGGQDSSCLLTIFYILSKKWGF---KLGAVYCNHC 66

Query: 62  L--RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
                 +        D      I    V   NS+P       AR+ RY+     +K  + 
Sbjct: 67  WTDSPQSSLSA---FDTLQMFDIPFYFVESPNSEPMK-PEQKARDWRYSSFYTISKWEDY 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKG 147
             ++T H+  D +ETV     R    KG
Sbjct: 123 DFVLTGHSLSDCVETVLFNLFRGSGLKG 150



 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
            +++  + RP ++  RE +  F     I    D SN D    R  +R+ +  +
Sbjct: 507 KNVDFIVFRPLIKITRETLFLFSNNLKIPIYYDKSNKDLNITRNYIRKVLVPL 559


>gi|317014572|gb|ADU82008.1| hypothetical protein HPGAM_06125 [Helicobacter pylori Gambia94/24]
          Length = 253

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  +     F K  F A++V + L E     ++++SD+C 
Sbjct: 26  GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|307637856|gb|ADN80306.1| tRNA-Cytosine32--2-thiocytidine synthetase [Helicobacter pylori
           908]
 gi|317011386|gb|ADU85133.1| hypothetical protein HPSA_05805 [Helicobacter pylori SouthAfrica7]
 gi|325996453|gb|ADZ51858.1| tRNA Cytosine 32-2-thiocytidine synthetase [Helicobacter pylori
           2018]
 gi|325998042|gb|ADZ50250.1| tRNA Cytosine 32-2-thiocytidine synthetase [Helicobacter pylori
           2017]
          Length = 253

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  +     F K  F A++V + L E     ++++SD+C 
Sbjct: 26  GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|256004136|ref|ZP_05429120.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
 gi|255991884|gb|EEU01982.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
          Length = 218

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V VSGG DS+ LL+AL  + +     K +  AI++   + E    ++  V ++C 
Sbjct: 5   GDRIAVGVSGGKDSLTLLVALRQLKNFLPV-KFELKAITLTMGIGE---VDLSPVRELCE 60

Query: 79  RLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           R+ ++++V            + +    +     R   +   AK +    +  AH  DD +
Sbjct: 61  RIDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGALHNTAKRLGCNKVALAHHMDDVI 120

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  +        +G   +    T L    L++ RP +    + ++ F+   NI    +P
Sbjct: 121 ETFLLSLF----YEGRIHTFSPVTYLDRKGLYLIRPLIYTEEKLVKQFVKANNIITVANP 176

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
              +   +R  ++  + ++      +K   F  ++ 
Sbjct: 177 CPANGYTKRQYIKDLLAELRKENRQIKSNIFGAIKR 212


>gi|322378687|ref|ZP_08053120.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS1]
 gi|322380182|ref|ZP_08054417.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS5]
 gi|321147397|gb|EFX42062.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS5]
 gi|321148904|gb|EFX43371.1| adenine nucleotide alpha hydrolase [Helicobacter suis HS1]
          Length = 256

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 17/176 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  + +   F    F A +V + L    K+++ ++SD+C 
Sbjct: 26  GDRILIGLSGGKDSILLSCLLARMQAHAPF-NFTFQAATVHYGL----KEDLAWLSDLCV 80

Query: 79  RLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H+++         +  + Q+   +     R  ++  +A       +  AH  DD 
Sbjct: 81  EQNIPHTILYTNIAQTIREKRREQSSYCSFCSRMRRGVLYNYALEHGYNKLALAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +E+ +M    + +     L  M      +  L++ RP +  R      F+  +NI 
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYKAENGLFVIRPLIHIRERQSIDFVKSQNIP 191


>gi|330508540|ref|YP_004384968.1| hypothetical protein MCON_2761 [Methanosaeta concilii GP-6]
 gi|328929348|gb|AEB69150.1| conserved hypothetical protein TIGR00269 [Methanosaeta concilii
           GP-6]
          Length = 308

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 83/210 (39%), Gaps = 24/210 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     I VAVSGG DS  LL AL  VL+++    ++  A++VD  +     D +   
Sbjct: 42  RMIEKGERIAVAVSGGKDSTALLFALSRVLAEKE---VEMVALTVDEGIAGYRDDTIVAA 98

Query: 74  SDVCSRLRIAHSVVSWKNS----------KPQTGLMAAAREARYALISEHAKTINATLIM 123
             +  ++ +   ++S++              +          R   ++  AK++  T + 
Sbjct: 99  KRIARQMGVEQVIISFQEEYGWSLDEMVVGAEVAPCTYCGVFRKNALNCAAKSLGVTKLA 158

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+ ++V M   +   E+   L            +   +P      ++I  + + 
Sbjct: 159 TGHNQDDEAQSVMMNYLKGDMER---LMRFRPRREQPGLIPRIKPLRDIPEKEIALYAMV 215

Query: 184 RNISW--CEDPSNTDDRFERVRVRRFVRDI 211
             I +   E P      + R+ +R  VRD+
Sbjct: 216 NGIYFESRECP------YARLSLRADVRDM 239


>gi|148272021|ref|YP_001221582.1| putative cell cycle protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829951|emb|CAN00876.1| putative cell cycle protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 341

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/324 (23%), Positives = 120/324 (37%), Gaps = 18/324 (5%)

Query: 8   SVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  +  L   +   +LVA+SGG+DS+ L  A                    DH L++ 
Sbjct: 18  AVREALAGLDPASSGPVLVALSGGADSLALAAAAAFEGPRAGVAAGAVVV---DHGLQDG 74

Query: 66  AKDEVRYVSDVCSRLRIAHSVV-SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +       +D    L +A  VV   + +   +G  AAAR ARYA   +  +   +  ++ 
Sbjct: 75  SAAVAARAADAARALGLAPVVVTRVRVAPGASGPEAAARAARYAAFDDALRETGSRALLL 134

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSFLLQ 183
           AHT DDQ ETV +   R        L GM  +      +    RP L  R    R+    
Sbjct: 135 AHTLDDQAETVLLGLARGSGA--TSLHGMAASTPARAADAVYLRPLLGIRAAVTRAACAD 192

Query: 184 RNISWCEDPSNTDDRFERVRVRR--------FVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           + +    DP N D  + RVRVR          +      AL     + ++    + +  A
Sbjct: 193 QGLDPWRDPHNADPAYARVRVRHEALPVLERELGPGIAEALARTADQLREDDDALEHFAA 252

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
            +I +        I      +L     L   L+R  AA       L     +E   L   
Sbjct: 253 EMIEEIADHAEAGISLEVASLLAAPPALRHRLIR-LAAREEFAAHLSRTHVLEVARLVTD 311

Query: 296 SGKRGCVSIGRVVIDRRANFLWIT 319
              +G V +  V + R+   + ++
Sbjct: 312 WHGQGPVDLPGVRVVRKDGLIVLS 335


>gi|91772989|ref|YP_565681.1| hypothetical protein Mbur_0991 [Methanococcoides burtonii DSM 6242]
 gi|91712004|gb|ABE51931.1| PP-loop family protein [Methanococcoides burtonii DSM 6242]
          Length = 302

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 93/233 (39%), Gaps = 20/233 (8%)

Query: 2   FLSPIE-SVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+  +E  V+  +R          I VA+SGG DS+ LL  LH +   R    I+  A++
Sbjct: 28  FIEDVERKVKLTIRKQYKIEKGDIIAVALSGGKDSVVLLYLLHKIFGVRR--DIEIVALT 85

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREAR 106
           +D  +    ++ +     + S L I H V S+K+            + + G  +     R
Sbjct: 86  IDEGIAGYREETLAKARKLTSELGIRHIVRSFKDEYDKTLDELTAQERKLGACSYCGVLR 145

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            +L+++ A  I A  + T H  DD+ +T+ M       ++   +  +      +  +  +
Sbjct: 146 KSLMNKIANEIGANKLATGHNLDDEAQTIMMNHLGGDVDR---MIRLSPPREIEGLVLRA 202

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           +P  +   +++  + +   + +            R  VR  + + ++     K
Sbjct: 203 KPLRKVPEKEVALYAIVNELPFDMSECPYAHEALRGEVRDMINEFEVRHPGTK 255


>gi|126329025|ref|XP_001378316.1| PREDICTED: similar to cancer-associated gene protein [Monodelphis
           domestica]
          Length = 444

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/216 (21%), Positives = 79/216 (36%), Gaps = 19/216 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L  +L  R    +    ++VD  +       +  V
Sbjct: 92  RLLPPGAVVAVGASGGKDSTVLAHVL-QILDARHSLGLDLRLVAVDEGIGGYRDAALAAV 150

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-----------------RYALISEHAKT 116
               +R R+  +VV++        +   AR A                 R   + E A+ 
Sbjct: 151 RRQAARWRLPLTVVAYVELFGGWTMDEVARRAAQEPGRARACCTFCGVLRRRALEEGAQR 210

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + AT I+T H  DD  ETV M   R  A + +   G   +      L   RP     +++
Sbjct: 211 VGATHIVTGHNADDMAETVLMNFLRGDAGR-LARGGTLGSPGEGGALPRCRPLQFASQKE 269

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           I  +   + + +  +         R  VR  ++ ++
Sbjct: 270 IVLYAHFQELDYFSEECVYAPEAFRGHVRDLLKALE 305


>gi|308062463|gb|ADO04351.1| hypothetical protein HPCU_06025 [Helicobacter pylori Cuz20]
          Length = 253

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 17/180 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195


>gi|317012963|gb|ADU83571.1| hypothetical protein HPLT_05905 [Helicobacter pylori Lithuania75]
          Length = 253

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 73/180 (40%), Gaps = 17/180 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195


>gi|238926101|ref|ZP_04657861.1| PP-loop family ATPase [Selenomonas flueggei ATCC 43531]
 gi|238885991|gb|EEQ49629.1| PP-loop family ATPase [Selenomonas flueggei ATCC 43531]
          Length = 260

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/233 (19%), Positives = 83/233 (35%), Gaps = 17/233 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   + +V  F   +    HIL+ VSGG DS+ L  AL  +L +R       +A +V+  
Sbjct: 10  FSKLMRAVVEF-ELIENGDHILIGVSGGKDSIFLTYALA-ILRERLKKDFTIAAFTVN-- 65

Query: 62  LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114
                 D  +   ++  C  L + + VV          + +          R  +++ +A
Sbjct: 66  --PQFDDPFDTDVIAAFCKSLDVPYEVVDVDIAGAIAEQEEKSPCFTCAFFRRGVVNRYA 123

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  +   +  AH  DD +ET  M         G   +    T L    + + RP +  R 
Sbjct: 124 KEHHMNKVAYAHHHDDAVETFLMSLF----YSGQLNTFRPKTYLDKTGITVIRPLVYFRE 179

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           ++I   +     +    P   +    R  V+  +  +      L       +R
Sbjct: 180 QEIIDAIPLHGFTPIPSPCPHNGNTTRQTVKELIARLSAENPSLYSHLAAGMR 232


>gi|315924540|ref|ZP_07920759.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622070|gb|EFV02032.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 237

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 18/235 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LSP+         +     I + +SGG DSM LL A+            +  AI++D  L
Sbjct: 6   LSPMRRAIQQFDMISPGDRIAIGISGGKDSMALLAAMARYQKFSPIP-FELEAITLDAGL 64

Query: 63  RETAKDEVRY--VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114
                + + +  ++D C R+ + +++          + + +    A     R   +   +
Sbjct: 65  -----EGMDFSPIADYCRRINVPYTIKKSAIAKVVFDIRQEKNPCALCARMRRGALHNLS 119

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    I   H  DD +ET ++    +        + M  T L    + + RP +  + 
Sbjct: 120 KELGCNKIALGHHSDDVVETFFLSLLYESRIN----TFMPVTYLDRKKITLIRPLVFVKE 175

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           +DI      R++   +     D   +R  V+  +  +      L  +    ++ K
Sbjct: 176 KDIIFDKTCRHLPLIQSTCPADGHTKRQTVKNMLEQLKKEIPDLNPRIMSAIQNK 230


>gi|89898294|ref|YP_515404.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56]
 gi|89331666|dbj|BAE81259.1| PP-loop type ATPase [Chlamydophila felis Fe/C-56]
          Length = 247

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 100/226 (44%), Gaps = 20/226 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     I+VA+SGG DS+ LL+ L ++ S R F ++   A+++       ++   +Y+++
Sbjct: 31  LENHTKIVVALSGGKDSLTLLLMLKAI-SGRGFPELDLYAVNIGGKYSCGSEVSQKYLAN 89

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +C ++++  + ++     P+     +  + R  L+ + AK + A+ +   H  DD ++T 
Sbjct: 90  ICDKIQVPFTSIA-SPYSPEVPECYSCSQVRRRLLFQAAKEVGASAVAFGHHRDDVVQTA 148

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            M     +  +  G+  +   + +D  + I RP +      IR F  +            
Sbjct: 149 LMNLL--HKAEFAGMLPVLGMVHFD--ITILRPLILTPESWIRKFSKESG---------- 194

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
              F RV  R  V  +        +K  +++  +  + +A+ I ++
Sbjct: 195 ---FARVTCRCPVVSL-RTKTEAALKSLEEVFPQARHNIALAIEQH 236


>gi|182418849|ref|ZP_02950113.1| ExsB family protein [Clostridium butyricum 5521]
 gi|237668843|ref|ZP_04528827.1| ExsB family protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377302|gb|EDT74864.1| ExsB family protein [Clostridium butyricum 5521]
 gi|237657191|gb|EEP54747.1| ExsB family protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 241

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 78/223 (34%), Gaps = 34/223 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---------HCLRETAKDE 69
              I V +SGG DS+ LL  L+S     S  K +  AI+++         H L       
Sbjct: 21  GDKIAVGLSGGKDSLTLLHLLNSY-KKFSPQKFELIAITLNPGGVDNTPLHKL------- 72

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIM 123
                  C  L I    +     K       +    +   + R   +  +AK +    + 
Sbjct: 73  -------CKDLEIPFHEIQTDIQKIVFEIRKENNPCSLCAKLRRGALHNNAKELGCNKVA 125

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD +ET+ +      + +G        T +   N+ + RP +      I++ + +
Sbjct: 126 LGHHKDDAIETLMLSL----SYEGRINCFSPKTFMDKENITLIRPMVYIEEASIKNIVNK 181

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            N     +P   D +  R  ++  + +++      K   F  L
Sbjct: 182 YNFPVIHNPCPVDKKTRREDMKNLIFELNGRIPGFKNNLFGAL 224


>gi|289525255|emb|CBJ14731.1| conserved hypothetical protein [Chlamydia trachomatis Sweden2]
 gi|296434803|gb|ADH16981.1| hypothetical protein E150_01125 [Chlamydia trachomatis E/150]
 gi|296435732|gb|ADH17906.1| hypothetical protein G9768_01115 [Chlamydia trachomatis G/9768]
 gi|296436656|gb|ADH18826.1| hypothetical protein G11222_01110 [Chlamydia trachomatis G/11222]
 gi|296437592|gb|ADH19753.1| hypothetical protein G11074_01115 [Chlamydia trachomatis G/11074]
 gi|296438523|gb|ADH20676.1| hypothetical protein E11023_01115 [Chlamydia trachomatis E/11023]
 gi|297140091|gb|ADH96849.1| hypothetical protein CTG9301_01115 [Chlamydia trachomatis G/9301]
          Length = 254

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I VA+SGG DS+ LL+ L ++ S R F ++   AI +     
Sbjct: 19  SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A     Y+S +C ++++    +     + +          R  L+ + AK + AT + 
Sbjct: 78  CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +    + IR F  +
Sbjct: 137 FGHHRDDVVQTTLMNLL--HKAEFAGMLPIVDMVNF--GITILRPLIFIPEDLIRKFAKE 192

Query: 184 RN 185
             
Sbjct: 193 SG 194


>gi|322807607|emb|CBZ05182.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum
           H04402 065]
          Length = 249

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 18/213 (8%)

Query: 9   VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           VR  +   +++ P   I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L   
Sbjct: 16  VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119
              ++  +   C +  I   +          N + +    +   + R   +   +K+I A
Sbjct: 72  -DMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD +ET++M   +     G   S        D  + I RP +  R + I+ 
Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKD 186

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + N+   +     D +  R  ++  +  ++
Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219


>gi|269957764|ref|YP_003327553.1| tRNA(Ile)-lysidine synthetase [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306445|gb|ACZ31995.1| tRNA(Ile)-lysidine synthetase [Xylanimonas cellulosilytica DSM
           15894]
          Length = 384

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/241 (26%), Positives = 92/241 (38%), Gaps = 35/241 (14%)

Query: 6   IESVRFFVRS---------LVYPAHILVAVSGGSDSMGLLIALHS------VLSDRSFGK 50
           + +VR  VR+         L     +LVA SGGSDS+ L  A+                 
Sbjct: 8   VLAVRVAVRATLADLVAAGLGPGDLVLVACSGGSDSLALAAAVAHESRRVGRSVRSRGFA 67

Query: 51  IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAREARYA 108
           ++ +A+ VDH L+  + D     +  C  L +   VV          TGL  AAR ARYA
Sbjct: 68  VRAAAVVVDHGLQPGSDDVAAAAAQQCRGLGLDPVVVRRVVVGHDGVTGLEDAARRARYA 127

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
              + A +  A  ++  HT DDQ E V +   R    + +         +        RP
Sbjct: 128 AFDDVAASTGAVAVLLGHTLDDQAEQVLLGLARGSGARTLA-------GIPPARGIYRRP 180

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNT-----DDRF------ERVRVRRFVRDIDLHALY 217
            L  RR  +R+    + + W +DP+N      D          R RVR  V  +    L 
Sbjct: 181 LLGLRRAQLRAACAAQGLDWWDDPTNDLPPSSDRDMPHGPVPLRTRVRHEVLPLLEDVLG 240

Query: 218 L 218
            
Sbjct: 241 P 241


>gi|255311017|ref|ZP_05353587.1| hypothetical protein Ctra62_01120 [Chlamydia trachomatis 6276]
 gi|255317318|ref|ZP_05358564.1| hypothetical protein Ctra6_01115 [Chlamydia trachomatis 6276s]
 gi|255506792|ref|ZP_05382431.1| hypothetical protein CtraD_01130 [Chlamydia trachomatis D(s)2923]
 gi|297748347|gb|ADI50893.1| TtcA [Chlamydia trachomatis D-EC]
 gi|297749227|gb|ADI51905.1| TtcA [Chlamydia trachomatis D-LC]
          Length = 283

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I VA+SGG DS+ LL+ L ++ S R F ++   AI +     
Sbjct: 48  SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 106

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A     Y+S +C ++++    +     + +          R  L+ + AK + AT + 
Sbjct: 107 CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 165

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +    + IR F  +
Sbjct: 166 FGHHRDDVVQTTLMNLL--HKAEFAGMLPIVDMVNF--GITILRPLIFIPEDLIRKFAKE 221

Query: 184 RN 185
             
Sbjct: 222 SG 223


>gi|115387515|ref|XP_001211263.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114195347|gb|EAU37047.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 570

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 84/299 (28%), Gaps = 86/299 (28%)

Query: 33  MGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR--IAHSV-- 86
           M L          +      ++ +A  VDH  RE +  E R V+     +   +   +  
Sbjct: 1   MALAHLCKQWEQAQRNTDDDLRVTAFVVDHKAREESSREARMVAQYLQDIGSSLPSLIKN 60

Query: 87  ----------------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                           +SW    P T     AR  R+  + +  +      ++  H  DD
Sbjct: 61  RSEELTAAGVTSQILELSWPPDTPTTAFETHARRLRFQALGKACRDHQIEALLMGHHQDD 120

Query: 131 QLETVYMRS---QRDYAEKGM----------GLSGMCDTILYD----------------- 160
            +ET   R     R     G+          GL G+ ++  +                  
Sbjct: 121 NVETTLWRLCTGARGGGLAGIPSMTRIPECHGLYGVSESGAHTTLQLKRMRALSFHVSPT 180

Query: 161 ---------------------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
                                        + + RP L   +  + +   + NI +  DP+
Sbjct: 181 NELHVLPDDTTNAIDGDIPATPVLMSTGGILVCRPLLDFPKARLLATCHENNIPYVSDPT 240

Query: 194 NTDDRFE-RVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
           N D     R  +R  +      R +   ++   ++  Q L      A   L+     + 
Sbjct: 241 NFDPTLTPRNAIRSLISSRKLPRALQAPSILALIRSSQSLLQHSTTASNQLLQTCEALD 299


>gi|166154427|ref|YP_001654545.1| hypothetical protein CTL0469 [Chlamydia trachomatis 434/Bu]
 gi|166155302|ref|YP_001653557.1| hypothetical protein CTLon_0464 [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335686|ref|ZP_07223930.1| hypothetical protein CtraL_02630 [Chlamydia trachomatis L2tet1]
 gi|165930415|emb|CAP03908.1| conserved hypothetical protein [Chlamydia trachomatis 434/Bu]
 gi|165931290|emb|CAP06862.1| conserved hypothetical protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 254

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I VA+SGG DS+ LL+ L ++ S R F ++   AI +     
Sbjct: 19  SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A     Y+S +C ++++    +     + +          R  L+ + AK + AT + 
Sbjct: 78  CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +    + IR F  +
Sbjct: 137 FGHHRDDVVQTTLMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEDLIRKFAKE 192

Query: 184 RN 185
             
Sbjct: 193 SG 194


>gi|168185941|ref|ZP_02620576.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str.
           Eklund]
 gi|169296152|gb|EDS78285.1| ATPase of the pp-loop superfamily [Clostridium botulinum C str.
           Eklund]
          Length = 239

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 88/218 (40%), Gaps = 15/218 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L++     S    +  AI++D      A  +   +  
Sbjct: 18  IQSGDKIAVGLSGGKDSITLLYLLNAY-KRFSPQPFELLAITLD----PGAGADFTEMIR 72

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +C  L + + +   +      + + ++   +     R   +++HAK +    +   H  +
Sbjct: 73  ICKELSVPYYLFKTRIKEIVFDIRKESNPCSLCANLRRGSLNDHAKKLGCNKVALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G   +   DT L   +L I RP +    ++I++ +   NIS  
Sbjct: 133 DAIETLLMSMF----YEGRINTFSPDTYLSRSDLHIIRPMIYIDEQNIKTLIKNSNISIV 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           E+P   +   +R  ++     ++     LK      L 
Sbjct: 189 ENPCPANGFTKREYMKNLTYSLEEDIPGLKNNILNSLS 226


>gi|109947003|ref|YP_664231.1| hypothetical protein Hac_0396 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714224|emb|CAJ99232.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 253

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCK 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  DQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPIAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|125974666|ref|YP_001038576.1| ATPase [Clostridium thermocellum ATCC 27405]
 gi|125714891|gb|ABN53383.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Clostridium thermocellum ATCC 27405]
 gi|316941791|gb|ADU75825.1| PP-loop domain protein [Clostridium thermocellum DSM 1313]
          Length = 237

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 93/234 (39%), Gaps = 17/234 (7%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  +R  ++    +     I V VSGG DS+ LL+AL  + +     K +  AI++  
Sbjct: 6   RLLGQIRRAIQDYNMIQDGDRIAVGVSGGKDSLTLLVALRQLKNFLPV-KFELKAITLTM 64

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114
            + E    ++  V ++C R+ ++++V            + +    +     R   +   A
Sbjct: 65  GIGE---VDLSPVRELCERIDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGALHNTA 121

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    +  AH  DD +ET  +        +G   +    T L    L++ RP +    
Sbjct: 122 KRLGCNKVALAHHMDDVIETFLLSLF----YEGRIHTFSPVTYLDRKGLYLIRPLIYTEE 177

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
           + ++ F+   NI    +P   +   +R  ++  + ++      +K   F  ++ 
Sbjct: 178 KLVKQFVKANNIITVANPCPANGYTKRQYIKDLLAELRKENRQIKSNIFGAIKR 231


>gi|269303137|gb|ACZ33237.1| PP-loop family protein [Chlamydophila pneumoniae LPCoLN]
          Length = 244

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I+VA+SGG DS+ LL+ L ++ S R F  +   A+++     
Sbjct: 19  SLVRKALYTHTMLANHHKIVVALSGGKDSLTLLLMLKAI-SGRGFPDLDLHAVNIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A+    Y++ +C +L I    +      P+T       +AR  L+ + AK I A+ I 
Sbjct: 78  CGAEVNKPYLTRICDQLCIPFRTIP-SPYAPETPECYPCSQARRRLLFQAAKEIGASAIA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  +     +  +  G+  + D + +   + I RP +      IR F  +
Sbjct: 137 FGHHRDDLVQTALLNLL--HKAEFAGMLPVLDMVHF--GVTILRPLIFTPEFWIRKFAKE 192

Query: 184 RN 185
             
Sbjct: 193 NG 194


>gi|153939398|ref|YP_001392642.1| PP-loop family protein [Clostridium botulinum F str. Langeland]
 gi|152935294|gb|ABS40792.1| PP-loop family protein [Clostridium botulinum F str. Langeland]
 gi|295320627|gb|ADG01005.1| PP-loop family protein [Clostridium botulinum F str. 230613]
          Length = 249

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 18/213 (8%)

Query: 9   VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           VR  +   +++ P   I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L   
Sbjct: 16  VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIIAIHVDLGL--- 71

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119
              ++  +   C +  I   +          N + +    +   + R   +   +K+I A
Sbjct: 72  -DMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD +ET++M   +     G   S        D  + I RP +  R + I+ 
Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFNPHIDYKDKYVHIIRPLIYLREDLIKD 186

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + N+   +     D +  R  ++  +  ++
Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219


>gi|67470756|ref|XP_651341.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56468066|gb|EAL45955.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 313

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 21/205 (10%)

Query: 2   FLSPIES-VRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+  +E  V   +    L+YP  HI++ VSGG DS  L   L  +   R     K++ ++
Sbjct: 27  FIDRVEKLVHQCIDEFQLIYPTDHIVIGVSGGKDSTALATMLARI-EKRWPSGAKYTLVA 85

Query: 58  VDHCL---RETAKDEVRYVSDVCSRLRIAHSVVSWK----------NSKPQTGLMAAARE 104
           VD  +   R+ + + VR++ +    L++   ++S+            ++      +    
Sbjct: 86  VDEGIVGYRDKSLECVRWLQNY---LQLPLEIISYIETYGMTMDEIVTRGGKNACSYCGV 142

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            R   + + A  + A +I T H  DD  ETV M   R    +      +   +  +  + 
Sbjct: 143 LRRQCLEKAAIKVGANVIATGHNGDDVAETVLMNFLRGDVARLERCKSLKRELEREDGII 202

Query: 165 ISRPFLRCRREDIRSFLLQRNISWC 189
             +PF    ++++  +     + + 
Sbjct: 203 RIKPFSLLTQKEVVLYAHYMKLQYF 227


>gi|255348575|ref|ZP_05380582.1| hypothetical protein Ctra70_01145 [Chlamydia trachomatis 70]
 gi|255503115|ref|ZP_05381505.1| hypothetical protein Ctra7_01155 [Chlamydia trachomatis 70s]
          Length = 283

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I VA+SGG DS+ LL+ L ++ S R F ++   AI +     
Sbjct: 48  SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 106

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A     Y+S +C ++++    +     + +          R  L+ + AK + AT + 
Sbjct: 107 CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 165

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +    + IR F  +
Sbjct: 166 FGHHRDDVVQTTLMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEDLIRKFAKE 221

Query: 184 RN 185
             
Sbjct: 222 SG 223


>gi|168179056|ref|ZP_02613720.1| PP-loop family protein [Clostridium botulinum NCTC 2916]
 gi|226950722|ref|YP_002805813.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto]
 gi|182670110|gb|EDT82086.1| PP-loop family protein [Clostridium botulinum NCTC 2916]
 gi|226842372|gb|ACO85038.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto]
          Length = 249

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 18/213 (8%)

Query: 9   VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           VR  +   +++ P   I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L   
Sbjct: 16  VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119
              ++  +   C +  I   +          N + +    +   + R   +   +K+I A
Sbjct: 72  -DMDLEPLKFFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD +ET++M   +     G   S        D  + I RP +  R + I+ 
Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFNPHIDYKDKYVHIIRPLIYLREDLIKD 186

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + N+   +     D +  R  ++  +  ++
Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219


>gi|308183288|ref|YP_003927415.1| hypothetical protein HPPC_05775 [Helicobacter pylori PeCan4]
 gi|308065473|gb|ADO07365.1| hypothetical protein HPPC_05775 [Helicobacter pylori PeCan4]
          Length = 253

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  +     F K  F A++V + L     ++++++SD+C 
Sbjct: 26  GDKVLLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGL----GEDLKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQSIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|296128486|ref|YP_003635736.1| tRNA(Ile)-lysidine synthetase [Cellulomonas flavigena DSM 20109]
 gi|296020301|gb|ADG73537.1| tRNA(Ile)-lysidine synthetase [Cellulomonas flavigena DSM 20109]
          Length = 386

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 88/215 (40%), Gaps = 18/215 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              A +LVA SGG+DS+ L   L     D   G  +  A+ VDH L++ + D  +  +  
Sbjct: 23  PPGATVLVACSGGADSLALAAGLAWEAQD---GGWRAGAVVVDHGLQDGSHDVAQEAAAA 79

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           C RL +    V   +     G  AAAR ARYA +   A  ++AT ++  HT DDQ ETV 
Sbjct: 80  CRRLGLDPVRVVRVDVGTAGGPEAAARSARYAALDAAADELDATAVLLGHTLDDQAETVL 139

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN-T 195
           +   R   E+   L+GM           ++         D  +    + +    DP+N  
Sbjct: 140 LALARGSGER--ALAGMRPVRGRLRRPLLALRRT-----DTEAACADQGLDPWHDPTNGR 192

Query: 196 DDRFE-------RVRVRRFVRDIDLHALYLKMKKF 223
               +       R RVR  V  +    L   + + 
Sbjct: 193 HPTADVPAGLPLRSRVRTEVLPVLEDVLGPGVAQA 227


>gi|15618181|ref|NP_224466.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|15835796|ref|NP_300320.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|16752779|ref|NP_445047.1| hypothetical protein CP0500 [Chlamydophila pneumoniae AR39]
 gi|33241603|ref|NP_876544.1| YdaO [Chlamydophila pneumoniae TW-183]
 gi|4376533|gb|AAD18410.1| PP-Loop Superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189418|gb|AAF38329.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8978634|dbj|BAA98471.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|33236111|gb|AAP98201.1| YdaO [Chlamydophila pneumoniae TW-183]
          Length = 244

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I+VA+SGG DS+ LL+ L ++ S R F  +   A+++     
Sbjct: 19  SLVRKALYTHTMLANHRKIVVALSGGKDSLTLLLMLKAI-SGRGFPDLDLHAVNIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A+    Y++ +C +L I    +      P+T       +AR  L+ + AK I A+ I 
Sbjct: 78  CGAEVNKPYLTRICDQLCIPFRTIP-SPYAPETPECYPCSQARRRLLFQAAKEIGASAIA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  +     +  +  G+  + D + +   + I RP +      IR F  +
Sbjct: 137 FGHHRDDLVQTALLNLL--HKAEFAGMLPVLDMVHF--GVTILRPLIFTPEFWIRKFAKE 192

Query: 184 RN 185
             
Sbjct: 193 NG 194


>gi|15604937|ref|NP_219721.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|3328625|gb|AAC67809.1| PP-Loop Superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
          Length = 234

 Score =  116 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 6/170 (3%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     I VA+SGG DS+ LL+ L ++ S R F ++   AI +       A     Y+S 
Sbjct: 11  LQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYSCGAAVSGNYLSS 69

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +C ++++    +     + +          R  L+ + AK + AT +   H  DD ++T 
Sbjct: 70  ICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVAFGHHRDDVVQTT 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            M     +  +  G+  + D + +   + I RP +    + IR F  +  
Sbjct: 129 LMNLL--HKAEFAGMLPIVDMVNF--GITILRPLIFIPEDLIRKFAKESG 174


>gi|312792343|ref|YP_004025266.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876293|ref|ZP_07736279.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796939|gb|EFR13282.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|312179483|gb|ADQ39653.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 235

 Score =  116 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 88/237 (37%), Gaps = 19/237 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F    ++V  F   +     I V VS G DS+ +L  L  +       K    AI+VD  
Sbjct: 5   FSKVRKAVEDF-EMIEDGDKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITVDMG 62

Query: 62  LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113
                 + + ++   + C ++ +   +V         + + +    +     R  +++  
Sbjct: 63  F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK++    +   H  DD +ET ++        +G        T L    +   RP +  +
Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITTIRPMIYLK 173

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             D+RS   +  +    +P   + +  R R++ FV+ +       K   F  ++  +
Sbjct: 174 EHDLRSAAKKLELPVITNPCPANGKTNRQRMKEFVKSLKQFHPATKDLVFNAIKRNI 230


>gi|295101039|emb|CBK98584.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Faecalibacterium prausnitzii L2-6]
          Length = 263

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 78/227 (34%), Gaps = 30/227 (13%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS---------VDHCLRETA 66
           L     +LV VSGG DS+ L I L  +     F   +  A++         VD+     +
Sbjct: 24  LAPGDRVLVGVSGGKDSVALTIGLARLRQYLGFP-FEVVAVTLDPQFGGKPVDY-----S 77

Query: 67  KDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             E  +      R  + + V          + + +    +   + R   +   A+ +   
Sbjct: 78  ALEALF-----RRYDVPYEVCRTLIGPIVFDYRNEKNPCSLCAKMRRGALHTAAEELGCN 132

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +   H  DD +ET YM   R    +G        T L D  L + RP L    +++R  
Sbjct: 133 KVALGHHLDDAIETFYMNLWR----EGRIGCFSPVTELSDRGLTLIRPLLLATEQEVRCA 188

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           + +      +     D    R   + FVR+        + K    L+
Sbjct: 189 VKEEGFPIVKSRCPADGVTTREDTKNFVRERCRTDRAFRQKTLHALQ 235


>gi|167385245|ref|XP_001737264.1| ATP-binding domain-containing protein [Entamoeba dispar SAW760]
 gi|165899992|gb|EDR26462.1| ATP-binding domain-containing protein, putative [Entamoeba dispar
           SAW760]
          Length = 313

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 21/205 (10%)

Query: 2   FLSPIES-VRFFVR--SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+  +E  V   +    L+YP  HI++ VSGG DS  L   L  +   R     K++ ++
Sbjct: 27  FIDRVEKLVHQCIDEFQLIYPTDHIVIGVSGGKDSTALATMLTRI-EKRWPSGAKYTLVA 85

Query: 58  VDHCL---RETAKDEVRYVSDVCSRLRIAHSVVSWK----------NSKPQTGLMAAARE 104
           VD  +   R+ + + VR++ +    L++   ++S+            ++      +    
Sbjct: 86  VDEGIVGYRDKSLECVRWLQEY---LQLPLEIISYIETYGMTMDEIVTRGGKNACSYCGV 142

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            R   + + A  + A +I T H  DD  ETV M   R    +      +   +  +  + 
Sbjct: 143 LRRQCLEKAAIKVGANVIATGHNGDDVAETVLMNFLRGDVARLERCKSLKRELEREDGII 202

Query: 165 ISRPFLRCRREDIRSFLLQRNISWC 189
             +PF    ++++  +     + + 
Sbjct: 203 RIKPFSLLTQKEVVLYAHYMKLRYF 227


>gi|76788939|ref|YP_328025.1| TtcA [Chlamydia trachomatis A/HAR-13]
 gi|237804562|ref|YP_002888716.1| hypothetical protein CTB_2111 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167469|gb|AAX50477.1| TtcA [Chlamydia trachomatis A/HAR-13]
 gi|231272862|emb|CAX09772.1| conserved hypothetical protein [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 254

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I VA+SGG DS+ LL+ L ++ S R F ++   AI +     
Sbjct: 19  SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A     Y+S +C ++++    +     + +          R  L+ + AK + AT + 
Sbjct: 78  CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +    + IR F  +
Sbjct: 137 FGHHRDDVVQTTLMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEDLIRKFAKE 192

Query: 184 RN 185
             
Sbjct: 193 SG 194


>gi|21325470|dbj|BAC00092.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Corynebacterium glutamicum ATCC 13032]
          Length = 297

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 105/275 (38%), Gaps = 36/275 (13%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +   ++VR +++      H+ + +SGG DS+ L+ A+ +  S       + +AI +DH L
Sbjct: 1   MELRKAVRPYLKE-----HVHIGLSGGPDSLALVAAVLAEKS-------QVTAICIDHNL 48

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +  + +     + +   +  A ++V      P  G+ AAA           A       I
Sbjct: 49  QTGSAEVTHNAAAMARHMG-AQAIVKSIEVAPGEGMEAAA-----REARYAAFAQLTDEI 102

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AHT DDQ ET  +   R         +GM D       L I RP L  RR       +
Sbjct: 103 WVAHTMDDQAETYLLGGLRGNP------AGMKDASRRPE-LSIIRPLLGARRAHTHGACV 155

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAV 234
           +  +    DP N DD F RV +R  V  +         +  L L  ++  +    V   V
Sbjct: 156 ELGLKPWHDPQNFDDAFRRVAIRNQVIPLLAQVHGGDPVPGLALAARRAVEDAEVVEGDV 215

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
                + L       + ++ +   +   +L   LR
Sbjct: 216 E---KRRLEWQDGFPVTLAGEPTGLRRRMLADFLR 247


>gi|288559819|ref|YP_003423305.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
 gi|288542529|gb|ADC46413.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
          Length = 305

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 19/201 (9%)

Query: 2   FLSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+  IE  VR  ++    +     +LVA+SGG DS+  L  L+S    R    I   A++
Sbjct: 28  FIESIEKKVRQTIKRENFIDRGDKVLVALSGGKDSVVTLDILNSY---RERHIIDLCAVT 84

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREAR 106
           +D  +    +D V        RL I H VVS+K             +   G        R
Sbjct: 85  IDEGIAGYREDGVEIAKAHAERLGIPHKVVSFKESFGIDLDEIMAKENHRGSCTYCGVFR 144

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             +I+  A+   AT I T H  DD+ + + M       E    +    ++      + I 
Sbjct: 145 RWIINRAARDFGATKIATGHNLDDETQAILMNYLEGNTENLAKIGPKTESNDELFTVKI- 203

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
           +P      ++I  + + + + 
Sbjct: 204 KPLREIPEKEIGLYAIAKGLD 224


>gi|326202249|ref|ZP_08192118.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325987367|gb|EGD48194.1| PP-loop domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 239

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 17/235 (7%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR  ++    +     I V VSGG DSM LL AL  + +     K +  AIS+  
Sbjct: 6   RILGQVRRAIQDYNMIEDGDKIAVGVSGGKDSMTLLTALRQLQNFYP-KKFELEAISLTM 64

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114
            +   A      V + C ++ + +SV            + +    +     R   +   A
Sbjct: 65  GI-GNADYTP--VVEYCKQIGVNYSVEETLIGKIIFEVRNEKNPCSMCANLRRGALHNKA 121

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    +   H  DD +ET+ +        +G   +    T L   +L++ RP +    
Sbjct: 122 KKLGCNKVALGHHRDDAVETLLL----SSFYEGRIHTFSPVTYLDRQDLYLIRPLIYTEE 177

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           + I++ +   ++   + P + D + +R  ++  + ++      +K   F  ++  
Sbjct: 178 KQIKAVVKSESLPIVKSPCHVDGKTKRQYIKDLILELQKDNREIKSNLFGAIKRA 232


>gi|312126480|ref|YP_003991354.1| PP-loop domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776499|gb|ADQ05985.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 235

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 88/237 (37%), Gaps = 19/237 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F    ++V  F   +     I V VS G DS+ +L  L  +       K    AI++D  
Sbjct: 5   FSKVRKAVEDF-EMIEEGDKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITIDMG 62

Query: 62  LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113
                 + + ++   + C ++ +   +V         + + +    +     R  +++  
Sbjct: 63  F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK++    +   H  DD +ET ++        +G        T L    +   RP +  +
Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITTIRPMIYLK 173

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             D+RS   +  +    +P   + +  R R++ FV+ +       K   F  ++  +
Sbjct: 174 EHDLRSAAKRLELPVITNPCPANGKTNRQRMKEFVKSLKQFHPATKDLVFNAIKRNI 230


>gi|157736789|ref|YP_001489472.1| hypothetical protein Abu_0536 [Arcobacter butzleri RM4018]
 gi|315635969|ref|ZP_07891230.1| PP-loop family protein [Arcobacter butzleri JV22]
 gi|157698643|gb|ABV66803.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
 gi|315479753|gb|EFU70425.1| PP-loop family protein [Arcobacter butzleri JV22]
          Length = 261

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 73/189 (38%), Gaps = 17/189 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +LV  SGG DS+ L+ +L+ +     +   +F A++V + + E     V ++S+ C 
Sbjct: 25  GDKVLVGFSGGKDSLTLIHSLNRLKKVVPY-NFEFKAVTVTYGMGEQ----VEFLSNHCK 79

Query: 79  RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H +++ +         +  +   +     R   +   A       +   H  DD 
Sbjct: 80  EHGIEHEIINTEIFELAGEKIRKNSSFCSFFSRMRRGYLYSTALEQGYNKVALGHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    +   +      M      +  L + RP + CR   +R+F     I    D
Sbjct: 140 MESFFMNFFYNGTMR-----TMPPIYKAENGLEVIRPLIFCRERQLRAFANTNEIRVIGD 194

Query: 192 PSNTDDRFE 200
            +    RF+
Sbjct: 195 EACPGLRFD 203


>gi|312136135|ref|YP_004003473.1| PP-loop domain-containing protein [Caldicellulosiruptor owensensis
           OL]
 gi|311776186|gb|ADQ05673.1| PP-loop domain protein [Caldicellulosiruptor owensensis OL]
          Length = 235

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 83/219 (37%), Gaps = 18/219 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV--SDVC 77
             I V VS G DS+ +L  L  +       K    AI+VD        + + ++   + C
Sbjct: 22  DKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITVDMGF-----EGMDFLPIKEFC 75

Query: 78  SRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            ++ +   +V         + + +    +     R  +++  AK++    +   H  DD 
Sbjct: 76  DKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNSTAKSLGCNKVALGHHLDDV 135

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++        +G        T L    + + RP +  +  D+RS   +  +    +
Sbjct: 136 VETFFLSLF----YEGRIYCFSPKTYLDRTQVTVIRPMIYVKEHDLRSAAKKLELPVITN 191

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P   + +  R +++ FV+ +       K   F  ++  +
Sbjct: 192 PCPANGKTNRQKMKEFVKSLKQFHPATKDLVFNAIKRNI 230


>gi|167770401|ref|ZP_02442454.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM
           17241]
 gi|167667408|gb|EDS11538.1| hypothetical protein ANACOL_01744 [Anaerotruncus colihominis DSM
           17241]
          Length = 236

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/217 (22%), Positives = 89/217 (41%), Gaps = 20/217 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHCLRETAKDEVRY--VSDVC 77
           + V VSGG DS+ LL  L  V   R F  I F+  AI++D    +    E  Y  ++ +C
Sbjct: 24  VAVGVSGGKDSVALLAGLAGV---RRFIGISFTLKAITLD---NQFGGIETDYGPIAALC 77

Query: 78  SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            RL + + +          + + ++   +     R  L+ + AKT     I   H ++D 
Sbjct: 78  ERLGVEYILKRTDIGRIIFDERNESNPCSLCARMRRGLLHDTAKTNGCNKIALGHHYNDA 137

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET  M        +G        T L   +L + RP +     +IR+ + +  +   + 
Sbjct: 138 VETFLMNLF----NEGRIGCFSPVTYLSRKDLTMVRPLVFATEREIRNAVNRAGLPVVKS 193

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
               D   ER   + F+ D++ +   +  + F  +R 
Sbjct: 194 ACPVDGCTERQWTKEFLYDMEKNHPGITKRIFGAMRR 230


>gi|237802640|ref|YP_002887834.1| hypothetical protein JALI_2111 [Chlamydia trachomatis B/Jali20/OT]
 gi|231273874|emb|CAX10665.1| conserved hypothetical protein [Chlamydia trachomatis B/Jali20/OT]
          Length = 254

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 6/182 (3%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +    +    L     I VA+SGG DS+ LL+ L ++ S R F ++   AI +     
Sbjct: 19  SLVRKALYTHAMLQKHTRIAVALSGGKDSLSLLLMLKAI-SGRGFPELTIHAIHIGGKYS 77

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A     Y+S +C ++++    +     + +          R  L+ + AK + AT + 
Sbjct: 78  CGAAVSGNYLSSICDKIQVPLISIP-SPYETENPECYTCSRIRRRLLFDTAKAVGATAVA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD ++T  M     +  +  G+  + D + +   + I RP +    + IR F ++
Sbjct: 137 FGHHRDDVVQTTLMNLL--HKAEFAGMLPVVDMVNF--GITILRPLIFIPEDLIRKFAME 192

Query: 184 RN 185
             
Sbjct: 193 SG 194


>gi|329577262|gb|EGG58726.1| tRNA(Ile)-lysidine synthetase domain protein [Enterococcus faecalis
           TX1467]
          Length = 353

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 80/206 (38%), Gaps = 25/206 (12%)

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +   A ++MTAH  DDQ ET+ M+  R         +G+ +   +     + RP L   
Sbjct: 1   MEIEGAAVLMTAHHLDDQAETILMKLIRGTNFSHS--AGIKERRPFATG-ELIRPLLIYP 57

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           +E++  F  ++   + ED +N  + + R R+R  V    L  L  +  +F D     +N 
Sbjct: 58  KEELYQFAQRQAFVYFEDETNQTNEYLRNRLRNQV----LPLLKQENPQFLDQIASFSNE 113

Query: 234 ---VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAA-------ICGGQISLP- 282
                  I + +   +   +  ++    I    L  LL+ + A           +  +P 
Sbjct: 114 QRFAQEFIQEQIEPQLSEAVEPTKQGWRIP---LKRLLKETLAYQHFFLTAFFQKTLVPL 170

Query: 283 ----GYRSMERVMLFLKSGKRGCVSI 304
                 R M +++  L   ++   S+
Sbjct: 171 GVSLNQRQMTQILKVLNDERQPQGSV 196


>gi|170754445|ref|YP_001782920.1| PP-loop family protein [Clostridium botulinum B1 str. Okra]
 gi|169119657|gb|ACA43493.1| PP-loop family protein [Clostridium botulinum B1 str. Okra]
          Length = 249

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 18/213 (8%)

Query: 9   VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           VR  +   +++ P   I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L   
Sbjct: 16  VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119
              ++  +   C +  I   +          N + +    +   + R   +   +K+I A
Sbjct: 72  -NMDLEPLKIFCKKNSIDLVIEKNNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD +ET++M   +     G   S        D  + I RP +  R + I+ 
Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKD 186

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + N+   +     D +  R  ++  +  ++
Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219


>gi|15679197|ref|NP_276314.1| hypothetical protein MTH1186 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622294|gb|AAB85675.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 278

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 14/225 (6%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             L+ P  HI VA+SGG DS+  L AL  + SD  F   + +AI+VD  +     + V  
Sbjct: 21  HELIKPGEHIAVALSGGKDSVLTLHALSDLRSDLDF---ELTAITVDEGIGGYRSEGVMV 77

Query: 73  VSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIM 123
             +    L +     S+++             +         R  +++  A+ I A+ I 
Sbjct: 78  ARENAELLGVELIERSFRDEFNFELDSVTDRFSSPCIPCGVFRRWILNRTAREIGASKIA 137

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD++++  M   R    K          I   +   I +P       ++R + + 
Sbjct: 138 TGHNMDDEIQSFIMSLARGDVRKFSKFGPELQRIHPAMVPRI-KPLWSTPESEVRLWAVL 196

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            ++    D     D   R R+R F+  ++     +K++  + L  
Sbjct: 197 NDVKVHLDSCPYSDLSMRSRIRDFLNHLESEKQGVKLRVMESLSR 241


>gi|255657558|ref|ZP_05402967.1| putative ATPase [Clostridium difficile QCD-23m63]
 gi|296452767|ref|ZP_06894456.1| ExsB family protein [Clostridium difficile NAP08]
 gi|296879981|ref|ZP_06903951.1| ExsB family protein [Clostridium difficile NAP07]
 gi|296258386|gb|EFH05292.1| ExsB family protein [Clostridium difficile NAP08]
 gi|296428958|gb|EFH14835.1| ExsB family protein [Clostridium difficile NAP07]
          Length = 244

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 21/250 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +     ++++ F   +     I V +SGG DS+ LL  L S     S    +  AI+++ 
Sbjct: 6   LLSKARKAIQDF-DMIQENDKIAVGLSGGKDSLTLLHILKSYQR-FSPQNFELIAITLNT 63

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114
              + +  +      +C  + +              + + +    A     R   ++++A
Sbjct: 64  GGVDNSPLD-----KLCKEINVPFYEFQTDIKEIVFDIRKEKNPCALCANLRRGALNDNA 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    +   H  DD +ET  M        +G        T L   +L + RP +    
Sbjct: 119 KKLGCNKVALGHHKDDAIETFLMSMF----YEGRVNCFSPKTYLDRQDLTVIRPMIYIEE 174

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
              +      N     +P   +    R  ++  + +++      K   F      +NN+ 
Sbjct: 175 YMTKKISKDSNYPIITNPCPANGHTRREYIKNLIANLNKEMPDFKRNVFG----ALNNSE 230

Query: 235 AMLIPKYLTV 244
            + I     +
Sbjct: 231 KLFIWDKEKI 240


>gi|118474467|ref|YP_892648.1| PP-loop family protein [Campylobacter fetus subsp. fetus 82-40]
 gi|261886379|ref|ZP_06010418.1| PP-loop family protein [Campylobacter fetus subsp. venerealis str.
           Azul-94]
 gi|118413693|gb|ABK82113.1| PP-loop family protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 250

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 85/251 (33%), Gaps = 34/251 (13%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       IL+ +SGG DS+ L   L     + +  K +F A++    L     ++  Y+
Sbjct: 20  KMFEKNDKILLGLSGGKDSLALAHILKHFQ-NVTPDKFEFEAVT----LSYGMGEDYAYL 74

Query: 74  SDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +  C +  I HSV+       S    +  +   +     R   +  +A       +  AH
Sbjct: 75  TAHCEKHGIKHSVIDSSIFEISKDKIRKNSSFCSFFSRMRRGYLYTYALEHGFNKLAIAH 134

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  E+ +M    + A     L  +         L + RP +  R   +R    + N+
Sbjct: 135 HLDDAAESFFMNFTYNGA-----LRTLAPKYRAKNGLVLIRPLINVRERQLRDNATKNNL 189

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
               D +    RF+                 +KM   +    ++   +    PK  T   
Sbjct: 190 FVIGDEACPAMRFD-----------------VKMPHARHETKQLLAGLEKENPKLFTSLQ 232

Query: 247 RSIIAISQDIL 257
            +   I +D  
Sbjct: 233 AAFENIHRDTF 243


>gi|45656041|ref|YP_000127.1| cell cycle protein [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|61216563|sp|Q72W10|TILS_LEPIC RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|45599274|gb|AAS68764.1| cell cycle protein [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 433

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/224 (19%), Positives = 76/224 (33%), Gaps = 27/224 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F +  E +  F   ++     +++ SGG DS  LL     +  ++           +DH 
Sbjct: 13  FHAVWERIAPF-HEMIQSRPAVLSYSGGKDSSILLHFYFWLWIEKKIPAPCIY--HLDHS 69

Query: 62  LR----------ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           +R          E A     + S +  +  I               L    R  RY  + 
Sbjct: 70  IRFNLEQEKKIFEYADSTFPF-SKIFKKKNIPALSRRL-----GKTLEETGRAFRYKDLK 123

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + +       I+T H   D LET+ +   R      +   G  +   +       RP   
Sbjct: 124 KISDQYEG-YIVTGHHSSDYLETILLNLIRGGGWNSLRTLGWYEKNRF-------RPLFA 175

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
             +E+I + L        ED SN  D + R R+R ++  + L  
Sbjct: 176 FSQEEIETILQSEFWKIFEDESNNSDEYLRNRIRSYIIPLLLRE 219


>gi|239916682|ref|YP_002956240.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665]
 gi|281414860|ref|ZP_06246602.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665]
 gi|239837889|gb|ACS29686.1| tRNA(Ile)-lysidine synthetase [Micrococcus luteus NCTC 2665]
          Length = 394

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 8/194 (4%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           LVA+SGG+DS+ L +A   ++  R   ++    A  VDH L+  +       + V   L 
Sbjct: 69  LVALSGGADSLALALACAVLVGTREGRRLNPIGAAVVDHGLQSGSDAVAAAAAGVARILG 128

Query: 82  I-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI----NATLIMTAHTFDDQLETVY 136
           +   +V   + ++   G  A AR AR   ++  A+       A +++TAHT DDQ E V 
Sbjct: 129 LTPVTVTRVEVARTGDGPEANARRARREALAAAARDAVPGAGAAVVLTAHTADDQAEQVL 188

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +   R    +   L+G+           + RP L   R D  +      ++W EDP N D
Sbjct: 189 LGLARGSGTR--SLAGIPARGTLPGGAAVVRPLLGLTRADTETICRWAGLTWFEDPHNRD 246

Query: 197 DRFERVRVRRFVRD 210
               R RVR  V  
Sbjct: 247 PALLRSRVRTRVLP 260


>gi|15612173|ref|NP_223825.1| hypothetical protein jhp1108 [Helicobacter pylori J99]
 gi|4155705|gb|AAD06688.1| putative [Helicobacter pylori J99]
          Length = 253

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 30/232 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  +     F K  F A++V + L E     ++++SD+C 
Sbjct: 26  GDKILLGLSGGKDSIMLACILARMQKHAPF-KFDFKAVTVHYGLGEN----LKWLSDLCQ 80

Query: 79  RLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H ++  + +       + ++   +     R   +   A       +  AH  DD 
Sbjct: 81  EQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALGEGYNKVAIAHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    + +     L  M      +  L + RP ++ R      F+  +NI    D
Sbjct: 141 VESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIRVAPD 195

Query: 192 -------PSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNAVA 235
                  P++      R+  + F++++ +LH  +     F  L    NN  A
Sbjct: 196 CNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHF-----FDSLENAFNNVQA 242


>gi|312138048|ref|YP_004005384.1| tRNA(ile)-lysidine synthase [Rhodococcus equi 103S]
 gi|311887387|emb|CBH46699.1| putative tRNA(Ile)-lysidine synthase [Rhodococcus equi 103S]
          Length = 329

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 86/215 (40%), Gaps = 17/215 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L    +VR ++        ++VA+SGG+DS+ L +A  +             A+ VDH L
Sbjct: 17  LEVRHAVRAWLARHHPAGGVVVALSGGADSLALTVAAVAEAP-------SVRAVVVDHRL 69

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           ++ + +     +        A + V   +     GL AAAR A     +          +
Sbjct: 70  QDGSAEVAAVAAARALEFGCAGADVVPVDVTGPGGLEAAARAA---RYAALDAARAGRPV 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  HT DDQ ETV +   R     G  + GM        +    RP L  RR+  R    
Sbjct: 127 LLGHTLDDQAETVLLGLARGSG--GRSIRGMAGY-----DAPWGRPLLGVRRDVTRRACA 179

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217
           +  +   EDP N D  F RVR+R  V  +   AL 
Sbjct: 180 ELGLVAHEDPHNADPAFTRVRLRTEVLPLLEDALG 214


>gi|24212845|ref|NP_710326.1| cell cycle protein [Leptospira interrogans serovar Lai str. 56601]
 gi|61216655|sp|Q8F9P6|TILS_LEPIN RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|24193502|gb|AAN47344.1| cell cycle protein [Leptospira interrogans serovar Lai str. 56601]
          Length = 433

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 27/224 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F +  E +  F   ++     +++ SGG DS  LL     +  ++           +DH 
Sbjct: 13  FHAVWERIAPF-HEMIQSRPAVLSYSGGKDSSILLHFYFWLWIEKKIPAPCIY--HLDHS 69

Query: 62  LR----------ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           +R          E A     + S +  +  I               L    R  RY  + 
Sbjct: 70  IRFNLEQEKKIFEYADSTFPF-SKIFKKKNIPALSRRL-----GKTLEETGRAFRYKDLK 123

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + +       I+T H   D LET+ +   R      +   G  +   +       RP   
Sbjct: 124 KISDQYEG-YIVTGHHSSDYLETILLNLIRGGGWNSLRTLGWYEKNRF-------RPLFA 175

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
             +++I + L        ED SN  D + R R+R ++  + L  
Sbjct: 176 FSQDEIETILQSEFWKIFEDESNNSDEYLRNRIRSYIIPLLLRE 219


>gi|319956547|ref|YP_004167810.1| pp-loop domain protein [Nitratifractor salsuginis DSM 16511]
 gi|319418951|gb|ADV46061.1| PP-loop domain protein [Nitratifractor salsuginis DSM 16511]
          Length = 272

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 22/215 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     +LV +SGG DS+ L+  L ++     F   +F A +V + +         + 
Sbjct: 27  RLIGAGDRVLVGLSGGKDSLSLVHLLKNMQMHAPF-DFEFHACTVSYGM-PGEDYSALH- 83

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + C    I H+V       +S +  +  +   +     R   +   A+      I   H
Sbjct: 84  -EHCEAYGIPHTVYETDIYAISQETIREGSSFCSYFSRMRRGALYSFAEKGGYDKIALGH 142

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            FDD +E+ +M    +   +      M      D    + RP +  R   +R+F  +   
Sbjct: 143 HFDDAVESFFMNMFYNGVMRS-----MAPIYKADRGFHVVRPLIEAREAQLRAFAEENGF 197

Query: 187 SWCEDPSNTDDR------FERVRVRRFVRDIDLHA 215
           +   D +    R      + R   + ++R ++   
Sbjct: 198 ATIGDEACPAMRIATKAPYARAATKEWLRQMEGEH 232


>gi|254977231|ref|ZP_05273703.1| putative ATPase [Clostridium difficile QCD-66c26]
 gi|255094560|ref|ZP_05324038.1| putative ATPase [Clostridium difficile CIP 107932]
 gi|255316315|ref|ZP_05357898.1| putative ATPase [Clostridium difficile QCD-76w55]
 gi|255518975|ref|ZP_05386651.1| putative ATPase [Clostridium difficile QCD-97b34]
 gi|255652155|ref|ZP_05399057.1| putative ATPase [Clostridium difficile QCD-37x79]
 gi|260685123|ref|YP_003216408.1| putative ATPase [Clostridium difficile CD196]
 gi|260688781|ref|YP_003219915.1| putative ATPase [Clostridium difficile R20291]
 gi|260211286|emb|CBA66853.1| putative ATPase [Clostridium difficile CD196]
 gi|260214798|emb|CBE07529.1| putative ATPase [Clostridium difficile R20291]
          Length = 244

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 21/250 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +     ++++ F   +     I V +SGG DS+ LL  L S     S    +  AI+++ 
Sbjct: 6   LLSKARKAIQDF-DMIQENDKIAVGLSGGKDSLTLLHILKSYQR-FSPQNFELIAITLNT 63

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114
              + +  +      +C  + +              + + +    A     R   ++++A
Sbjct: 64  GGVDNSPLD-----KLCKEINVPFYEFQTDIKEIVFDIRQEKNPCALCANLRRGALNDNA 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    +   H  DD +ET  M        +G        T L   +L + RP +    
Sbjct: 119 KKLGCNKVALGHHKDDAIETFLMSMF----YEGRVNCFSPKTYLDRQDLTVIRPMIYIEE 174

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
              +      N     +P   +    R  ++  + +++      K   F      +NN+ 
Sbjct: 175 YMTKKISKDSNYPIITNPCPANGHTRREYIKNLIANLNKEMPDFKRNVFG----ALNNSE 230

Query: 235 AMLIPKYLTV 244
            + I     +
Sbjct: 231 KLFIWDKEKI 240


>gi|148381240|ref|YP_001255781.1| PP-loop family protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931301|ref|YP_001385615.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937030|ref|YP_001389021.1| PP-loop family protein [Clostridium botulinum A str. Hall]
 gi|148290724|emb|CAL84855.1| putative ATP-binding protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927345|gb|ABS32845.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932944|gb|ABS38443.1| PP-loop family protein [Clostridium botulinum A str. Hall]
          Length = 249

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 18/213 (8%)

Query: 9   VRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           VR  +   +++ P   I VAVSGG DS+ LL  L  ++   +   I+  AI VD  L   
Sbjct: 16  VRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDLGL--- 71

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA 119
              ++  +   C +  I   +          N + +    +   + R   +   +K+I A
Sbjct: 72  -NMDLEPLKIFCKKNSIDLVIEKTNIANVVFNERKEKNPCSLCSKLRKGCLVRVSKSIGA 130

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD +ET++M   +     G   S        D  + I RP +  R + I++
Sbjct: 131 TKIALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLREDLIKN 186

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + N+   +     D +  R  ++  +  ++
Sbjct: 187 LVKKHNLPVVKSTCPEDKKTTREEMKNLMFKLE 219


>gi|148726265|emb|CAL07962.2| hypothetical protein [Ruminococcus flavefaciens]
          Length = 248

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 26/223 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RETAKDEVRY 72
             ILV VSGG DS+ LL  L  +         K  A+++D                    
Sbjct: 22  DRILVGVSGGKDSLVLLDGLVMLQRFIGI-DYKVIAVTLDMGFTNGTMDFSP-------- 72

Query: 73  VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +++ C+ L + + ++  +      + + +    +     R   + + A  +    +   H
Sbjct: 73  ITEHCNALGVEYHIIPTQIAEIVFDVRNEPSPCSLCARMRRGALHDAANDLGCNKVALGH 132

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            +DD +ET  M        +G        T L    + + RP +    +++R    +  +
Sbjct: 133 NYDDTVETFIMNLF----TEGRIGCYSPSTYLTHKKVTVIRPLVLAPEKEVRRAARRNAL 188

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
                    D    R + + F+ D++      K + F  ++  
Sbjct: 189 PVVTSVCPADGHTNRQKTKEFIADMERKEHGFKDRIFGAMKRA 231


>gi|227505939|ref|ZP_03935988.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           striatum ATCC 6940]
 gi|227197461|gb|EEI77509.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           striatum ATCC 6940]
          Length = 321

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 19/203 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  V        I V +SGG+DS+ L  AL +             A+ +DH L++ + 
Sbjct: 20  ACRRAVADFAACREIAVGLSGGADSLALTAALVA-------EGFDVEALCIDHGLQDGSA 72

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           ++    +     L     V+    +K Q  + AAAR A                +  AHT
Sbjct: 73  EQAAKAAAQAETLGARARVLKVDVAK-QGSMEAAARVA----RYRAFAAATDAPVAVAHT 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ + + R        ++GM  T   +  + + RP L  RR        +  + 
Sbjct: 128 ADDQAETLLLGALRGK------VAGMLPTAEIE-GVQVVRPLLTVRRAQTLGACEELGLE 180

Query: 188 WCEDPSNTDDRFERVRVRRFVRD 210
              DP N+D  F RV +R  +  
Sbjct: 181 PWYDPQNSDTNFRRVALRHDIIP 203


>gi|188589311|ref|YP_001921417.1| ExsB family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188499592|gb|ACD52728.1| ExsB family protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 239

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 82/211 (38%), Gaps = 16/211 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DS+ LL  L++     S  K +  AI+++    + +      +  +C 
Sbjct: 21  GDKIAVGLSGGKDSLTLLHLLNTY-KKFSPQKFELIAITLNPGGVDNSP-----LYTLCE 74

Query: 79  RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L +    +     K       +    +     R   +   A+ +    +   H  DD L
Sbjct: 75  NLEVPFYEIQTDIKKIVFDLRKEKNPCSLCANLRRGALHHSAENLGCNKVALGHHKDDAL 134

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +      + +G        T+++   + + RP +     +IRS + + N+   ++P
Sbjct: 135 ETLMLSM----SYEGRINCFSPKTLMHKNTITLIRPMVYIEEHNIRSVVKKYNLPVIKNP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
              D + +R  ++  + +++      K   F
Sbjct: 191 CPADGKTKRQDIKELIDELNNKIPGFKKNLF 221


>gi|320100819|ref|YP_004176411.1| PP-loop domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319753171|gb|ADV64929.1| PP-loop domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 339

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 111/300 (37%), Gaps = 41/300 (13%)

Query: 2   FLSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+   E  V+  +R    L    HI+VAVSGG DSM LL  L  +   R     + +A+ 
Sbjct: 27  FIEYFEKKVKKTIRKYEMLGEREHIIVAVSGGKDSMALLHFLRKL--SRKIPGWRITAVL 84

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREA---------- 105
           VD  +    +  +R ++       + + V S+K     T        R            
Sbjct: 85  VDEGISGYREKTIRNLAKYAEENGVEYRVASFKEYIGATLDEIVEKGRSRGLPYLPCSYC 144

Query: 106 ---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
              R  ++++ A+ +  T+I TAH  DD ++T  M    +  +K   +  +         
Sbjct: 145 GVFRRYVLNKAARELGGTVIATAHNMDDVVQTFIMNLASNSVDK---IYRLTPVTGNGEG 201

Query: 163 LWISR--PFLRCRREDIRSFLLQRNI---SWCEDP-SNTDDRFERVRVRRFVRDIDLHAL 216
            +I R  PF     ++   + L  N+    + + P ++ + RF    +RR + +++    
Sbjct: 202 GFIRRVKPFYMVLEKESALYALLNNLVEPEYVQCPYAHYNIRFT---IRRMINELE---- 254

Query: 217 YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
                K+  ++  + N++  L         R  I       +        L R    +  
Sbjct: 255 ----DKYPGVKYGLVNSLLSLTRDRQPSSTRGYICEICGEPSSHRVCRACLYRFETGLMS 310


>gi|210624190|ref|ZP_03294245.1| hypothetical protein CLOHIR_02201 [Clostridium hiranonis DSM 13275]
 gi|210153177|gb|EEA84183.1| hypothetical protein CLOHIR_02201 [Clostridium hiranonis DSM 13275]
          Length = 250

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 18/212 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVC 77
              I + +SGG DSM LL  L +     S  K +  AI    CL+   A +   +  ++C
Sbjct: 26  GDKIAIGLSGGKDSMALLHVLSTYRR-FSPEKFELMAI----CLQMGGADNSSLH--ELC 78

Query: 78  SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             L +    +         + + +    +   + R   ++++A       +   H  DD 
Sbjct: 79  KELDVEFHEIPTDIKEVVFDVRQEKNPCSLCAKMRRGALNDYAVKFGCNKVALGHHKDDA 138

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET  M        +G   +    + L    L + RP +      I+    + +    ++
Sbjct: 139 LETFLMSMF----YEGRVSTFSPKSYLDRTGLTVIRPMVYVEEYLIKKTAEEMDFKIVKN 194

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           P   D   +R  ++  +  +       K   F
Sbjct: 195 PCPADGNTKRQYIKELIARLQDEMPDFKKNMF 226


>gi|255308638|ref|ZP_05352809.1| putative ATPase [Clostridium difficile ATCC 43255]
          Length = 244

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 21/250 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +     ++++ F   +     I V +SGG DS+ LL  L S     S    +  AI+++ 
Sbjct: 6   LLSKARKAIQDF-DMIQENDKIAVGLSGGKDSLTLLHILKSYQR-FSPQNFELIAITLNT 63

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114
              + +  +      +C  + +              + + +    A     R   ++++A
Sbjct: 64  GGVDNSPLD-----KLCKEINVPFYEFQTDIKEIVFDIRQEKNPCALCANLRRGALNDNA 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    +   H  DD +ET  M        +G        T L   +L + RP +    
Sbjct: 119 KKLGCNKVALGHHKDDAIETFLMSMF----YEGRVNCFSPKTYLDRQDLTVIRPMVYIEE 174

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
              +      N     +P   +    R  ++  + +++      K   F      +NN+ 
Sbjct: 175 YMTKKISKDSNYPIITNPCPANGHTRREYIKNLIANLNKEMPDFKRNVFG----ALNNSE 230

Query: 235 AMLIPKYLTV 244
            + I     +
Sbjct: 231 KLFIWDKEKI 240


>gi|126701229|ref|YP_001090126.1| putative ATPase [Clostridium difficile 630]
 gi|255102819|ref|ZP_05331796.1| putative ATPase [Clostridium difficile QCD-63q42]
 gi|115252666|emb|CAJ70509.1| putative ATPase [Clostridium difficile]
          Length = 244

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 85/250 (34%), Gaps = 21/250 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +     ++++ F   +     I V +SGG DS+ LL  L S     S    +  AI+++ 
Sbjct: 6   LLSKARKAIQDF-DMIQENDKIAVGLSGGKDSLTLLHILKSYQR-FSPQNFELIAITLNT 63

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114
              + +  +      +C  + +              + + +    A     R   ++++A
Sbjct: 64  GGVDNSPLD-----KLCKEINVPFYEFQTDIKEIVFDIRQEKNPCALCANLRRGALNDNA 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    +   H  DD +ET  M        +G        T L   +L + RP +    
Sbjct: 119 KKLGCNKVALGHHKDDAIETFLMSMF----YEGRVNCFSPKTYLDRQDLTVIRPMVYIEE 174

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
              +      N     +P   +    R  ++  + +++      K   F      +NN+ 
Sbjct: 175 YMTKKISKDSNYPIITNPCPANGHTRREYIKNLIANLNKEMPDFKRNVFG----ALNNSE 230

Query: 235 AMLIPKYLTV 244
            + I     +
Sbjct: 231 KLFIWDKEKI 240


>gi|220932926|ref|YP_002509834.1| PP-loop domain protein [Halothermothrix orenii H 168]
 gi|219994236|gb|ACL70839.1| PP-loop domain protein [Halothermothrix orenii H 168]
          Length = 260

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 13/214 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +ILV +SGG DS  LL  L  +++  +    + +A++VD    +  K+   Y+ + C 
Sbjct: 26  GDNILVGLSGGKDSSFLLYVLA-LINRYASLDFRLAALTVDLGF-DGGKNYFDYLKNYCD 83

Query: 79  RLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           RL + + V+     S+  S+      A     R   I +  K      I   H +DD +E
Sbjct: 84  RLGVKYYVLETEIASYILSEKTEKPCARCAHFRKGAIVDFMKENGFNKIAYGHHYDDAVE 143

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  M         G   + +  T L    +++ RP +  R  +I       + +  E P 
Sbjct: 144 TFLMSIL----YAGQVKTFLPKTYLSRNEVYVIRPLVYLRESEIIRARKYMDYNPPESPC 199

Query: 194 NTDDRFERVRVRRFVRDI--DLHALYLKMKKFQD 225
             D +  R +V++ +R++  D    Y      ++
Sbjct: 200 PYDGQTTRDKVKKLLRELASDKQIFYNIAAAMRE 233


>gi|237736917|ref|ZP_04567398.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420779|gb|EEO35826.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Fusobacterium
           mortiferum ATCC 9817]
          Length = 251

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 76/237 (32%), Gaps = 18/237 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SPI         +     I V VSGG DSM  L AL  V         +   I +     
Sbjct: 24  SPIGRAMHKYNMVEAGDRIAVGVSGGKDSMTTLNALVRVKKIAQI-DFEIIPIHIH---- 78

Query: 64  ETAKDEV-RYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKT 116
                     +   C  L +   V S          K            R  ++    K 
Sbjct: 79  PNTDKASYEKIEKYCEELDLKLQVESTNLSDMLFGEKEVKNPCFLCGRIRRGILYRMMKE 138

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            N   +   H  DD +ET  M        +G         +  +  + + RP       D
Sbjct: 139 QNINKLALGHHKDDIIETFLMNVF----YQGNMKMMKPSYVSEEYGVRVIRPLAYVEEAD 194

Query: 177 IRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
           I  ++ ++ +     + P  T +  +R+RV+  ++++      ++   F  ++  ++
Sbjct: 195 IIRYVKKQELPVVASDCPYETSENSKRLRVKNLIKELAQENKDVRSVVFNSIKEMLD 251


>gi|51245182|ref|YP_065066.1| hypothetical protein DP1330 [Desulfotalea psychrophila LSv54]
 gi|50876219|emb|CAG36059.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 244

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/215 (22%), Positives = 76/215 (35%), Gaps = 10/215 (4%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEVRY 72
           L     +LV +SGG DSM L   LH     ++    +   I+VD+      + A D    
Sbjct: 27  LEDGDRVLVGLSGGVDSMVLAWILH-FWQKKAPISYQIETITVDNGYWRSSKGATDPQLS 85

Query: 73  VSDVCSRLRIAHSVVS-WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +     +  I H VV  W  ++ +      AR  R  L    A+      I   H  DD 
Sbjct: 86  IGPQMEKFGITHRVVDAWALAREEMTCYLCARNRRNQLFD-IARAEGFNKIALGHHKDDL 144

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET  +         G   + +    L+   L I RP     +E ++       +   ++
Sbjct: 145 LETFMLNCL----YSGNISTMVPHQKLFAGRLGIIRPMAYLEKEHVQELAGLAGLLPVKN 200

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                D   R +VR+ +  I       K   F  L
Sbjct: 201 YCPLSDHTRREKVRKILAHIYEIEPDAKKSMFAAL 235


>gi|291001787|ref|XP_002683460.1| predicted protein [Naegleria gruberi]
 gi|284097089|gb|EFC50716.1| predicted protein [Naegleria gruberi]
          Length = 886

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 14/218 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++P++        +     +L+ +SGG DS+ LL  LH++         +F A +VD   
Sbjct: 595 MAPVKKAIREFDMIKEGDRLLLGLSGGKDSLTLLHVLHALQYSNLGINFEFGACTVD--- 651

Query: 63  RETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            +TA  +   + + C +L + +      V+        + + A     +  ++   A+  
Sbjct: 652 PQTASYDPSPLINYCKQLGVPYFYESQSVIEGAKECDASSICAWCARMKRGILYNTARRE 711

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
              +++     DD  E+  M    +   + M      D      +L + RP +  R  + 
Sbjct: 712 GYNVLVLGQHLDDLAESFIMSIFHNGFMRTMKAHYTIDV----GDLRVIRPLIYVRETET 767

Query: 178 RSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL 213
           + F  +  +       P+  +   ER RV+  + + +L
Sbjct: 768 KKFAWESGLPVINENCPACFEIPKERARVKTLLANQEL 805


>gi|116199727|ref|XP_001225675.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51]
 gi|88179298|gb|EAQ86766.1| hypothetical protein CHGG_08019 [Chaetomium globosum CBS 148.51]
          Length = 312

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 18/168 (10%)

Query: 2   FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------K 52
           FL  + +    RF          I +A+SGG DSM L      +     + K+       
Sbjct: 20  FLDALAATCVPRFPQARSRAQRPIALAISGGVDSMALAYLCSKIRQTDQWFKVVDHSISS 79

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQT-------GLMAAAR 103
              + V+H LRE +  E   V+    +L +   VV   W    P+         +   AR
Sbjct: 80  PCGVIVNHDLREGSAIEADNVAVATRKLGVKSHVVRIRWDEVLPEGTKPNDVPNIETLAR 139

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
             RY  +    K      + TAH  DDQ ETV MR    +  +G+   
Sbjct: 140 YLRYRRLGTFCKVGQMATLFTAHHEDDQYETVMMRLLSGHGYRGLQGM 187


>gi|302900689|ref|XP_003048310.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI
           77-13-4]
 gi|256729243|gb|EEU42597.1| hypothetical protein NECHADRAFT_47816 [Nectria haematococca mpVI
           77-13-4]
          Length = 677

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 23/195 (11%)

Query: 2   FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK------ 52
           F   +++V   RF       P  + +   GG DSM L      +L      KI       
Sbjct: 20  FRDAVDAVCRPRFPAARSARPQRVGI---GGVDSMALAYLTSRMLQTFRRAKIADNPAHG 76

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQT-------GLMAAAR 103
             A+ +DH LR+ + +E   V+    +L +  +V  ++WK  K           L   AR
Sbjct: 77  ALAVVIDHRLRDESTEEAMQVAKELRKLDLKTTVTALAWKEEKRNGLDPRKLPNLEGLAR 136

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDL 161
             RY  +  H     AT +  AH  DDQ ETV MR    +  +G+      ++I   YD+
Sbjct: 137 TYRYRALGNHCNYQGATSLFFAHHRDDQYETVLMRLLGGHGYRGLQGIREANSIPECYDM 196

Query: 162 NLWISRPFLRCRRED 176
           +       +  +R  
Sbjct: 197 HGVYKSGLIDDQRNQ 211



 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR-FERVRVRRFVRDIDLHAL 216
           + D  + I RP L   ++ + +     NI W ED +N D     R  +R  VR+ +L   
Sbjct: 275 IEDGGVTIYRPLLEFDKDRLIATCEANNIPWVEDRTNKDPTLTTRNAIRYLVRNHELPKA 334

Query: 217 YLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIA 251
             K                     +  +   +II 
Sbjct: 335 LQKPAILALAERAKRRTKLEEAEAHRYLVREAIIK 369


>gi|307720710|ref|YP_003891850.1| PP-loop domain-containing protein [Sulfurimonas autotrophica DSM
           16294]
 gi|306978803|gb|ADN08838.1| PP-loop domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 249

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 70/197 (35%), Gaps = 17/197 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S +       + +     ILV +SGG DS+ ++ A+      R+    +F A++V + +
Sbjct: 10  MSKLGKTNAEFKLIEEGDKILVGLSGGKDSLTMIHAMKE-QQRRAPFAFEFIAVTVSYGM 68

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAK 115
            E        +S  C    I H +   +         +  +   +     R   +   AK
Sbjct: 69  GENFDK----LSAHCREHGIQHVIKETQTYDLAKEKIRKNSSFCSFFSRMRRGYLYSVAK 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    +   H  DD  E+ +M    +   + +              L + RP ++ R  
Sbjct: 125 ELGCNKVALGHHMDDAAESFFMNFIYNGQMRSLAPKYTAQ-----NGLVVIRPLIQMRER 179

Query: 176 DIRSFLLQRNISWCEDP 192
            +R+F+    I    D 
Sbjct: 180 QLRAFVEDNGIEAIGDE 196


>gi|227547905|ref|ZP_03977954.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227080010|gb|EEI17973.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 300

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 116/317 (36%), Gaps = 31/317 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + R  +R+L  PA  ++ +SGG+DS        ++++  +       A+ VDH L+E + 
Sbjct: 14  ACRRSLRALHGPA--VIGLSGGADS-------LALVAAAAAEDKDVRAMIVDHQLQEGSD 64

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
              R  ++  +   +  SV++           A               +     +  AHT
Sbjct: 65  QVARCAAEQANAWGVKASVIAVNAGGDNLEAAAR------EARYAALLSFGVD-VWVAHT 117

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DDQ ET+ + + R     GM   G        ++  I RPFL  RR D R    +  ++
Sbjct: 118 ADDQAETLLLGALRGN-PSGMAARG-------GIDNRILRPFLGIRRADTRGACAELGVT 169

Query: 188 WCEDPSNTDDRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             EDP N D+ +      RR +  +D       +        ++     ++     T   
Sbjct: 170 PWEDPMNVDENYRRVAVRRRVIPQLDELIGGDCVPALAATAGRIAADRELIEELCDTSAT 229

Query: 247 RSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGR 306
              + +++D     + L    +       G ++      S+ER++       +  + +G 
Sbjct: 230 SDCVELAKD----PAPLRRRRIVAWLHDSGVRVDGAQLCSIERLITDWHG--QAGIDVGG 283

Query: 307 VVIDRRANFLWITRAVR 323
               RR     +   +R
Sbjct: 284 CRRVRRVAGRLVLDELR 300


>gi|19173081|ref|NP_597632.1| similarity to HYPOTHETICAL PROTEIN YGW1_yeast [Encephalitozoon
           cuniculi GB-M1]
 gi|19168748|emb|CAD26267.1| similarity to HYPOTHETICAL PROTEIN YGW1_yeast [Encephalitozoon
           cuniculi GB-M1]
          Length = 317

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 72/221 (32%), Gaps = 17/221 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 I + VSGG DS  L   L  +L+ +    ++   +SVD  +       +  V  
Sbjct: 45  FQKGDRIGIGVSGGKDSTVLAYVL-DLLNRKHGYGVELVLLSVDEGIVGYRDQSIESVCR 103

Query: 76  VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
               L I   +VS+++              +          R   + + A+ +    I T
Sbjct: 104 NSKDLGIKLRIVSFEDVFGVTMDRVVQKIGRRSNCTYCGVFRRQALEKAAREMGVDAIAT 163

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGL-----SGMCDTILYDLNLWISRPFLRCRREDIRS 179
            H  DD  ETV +   R    +                   ++L   +PF    +++I  
Sbjct: 164 GHNADDMAETVLLNVLRGDISRLRRCTLAKTKEQKGGDGKAMSLSRLKPFKNIYQKEIVL 223

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220
           +   R + +            R  +R  ++ ++     + M
Sbjct: 224 YAFHRKLEYFSTECTYSPGASRGDLRMLIKQLEKEDPGIIM 264


>gi|220930764|ref|YP_002507673.1| PP-loop domain protein [Clostridium cellulolyticum H10]
 gi|220001092|gb|ACL77693.1| PP-loop domain protein [Clostridium cellulolyticum H10]
          Length = 239

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 18/219 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76
              I V VSGG DSM LL AL  + +     K +  AIS+   +   A     +  V + 
Sbjct: 24  GDRIAVGVSGGKDSMTLLTALRQLQNFYP-KKFELEAISLTMGI-GNAD----FTPVVEY 77

Query: 77  CSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           C ++ + +++            + +    +     R   +   AKT+    +   H  DD
Sbjct: 78  CKKIGVNYTIEETLIGKIIFEVRNEKNPCSMCANLRRGALHNKAKTLGCNKVALGHHRDD 137

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+ +        +G   +    T L   +L++ RP +    + I+S +   ++   +
Sbjct: 138 AVETLLL----STFYEGRIHTFSPVTYLDRKDLYLIRPLIYTEEKQIKSVVKSESLPIVK 193

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
            P + D + +R  ++  + D+      +K   F  ++  
Sbjct: 194 SPCHVDGKTKRQFIKDLILDLQKDNREIKSNLFGAIKRA 232


>gi|187776786|ref|ZP_02993259.1| hypothetical protein CLOSPO_00302 [Clostridium sporogenes ATCC
           15579]
 gi|187775445|gb|EDU39247.1| hypothetical protein CLOSPO_00302 [Clostridium sporogenes ATCC
           15579]
          Length = 249

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 18/218 (8%)

Query: 4   SPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             ++ VR  +   +++ P   I VAVSGG DS+ LL  L  ++   +   I+  AI VD 
Sbjct: 11  KFLKYVRRAIDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTAIKDIEIVAIHVDL 69

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114
            L       +  +   C +  I   +          N +      +   + R   +   +
Sbjct: 70  GL----DMGLEPLKIFCKKNGIDLIIEKTNIANVVFNERKDKNPCSLCSKLRKGCLVRVS 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K+I AT I   H  DD +ET++M   +     G   S        D  + I RP +  R 
Sbjct: 126 KSIGATKIALGHNCDDVIETLFMNVLK----IGKFGSFSPHIDYKDKYVHIIRPLIYLRE 181

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           + I+  + + N+   +     D +  R  ++  +  ++
Sbjct: 182 DLIKDLVEKYNLPVIKSTCPEDKKTTREEMKNLMFKLE 219


>gi|32267111|ref|NP_861143.1| hypothetical protein HH1612 [Helicobacter hepaticus ATCC 51449]
 gi|32263164|gb|AAP78209.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 267

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 17/175 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ LL  L S +   +  K  F AI++D+  R     E  Y+ + C 
Sbjct: 40  GDKVLLGLSGGKDSI-LLATLLSYMQKHAPFKFDFKAITIDYG-RGG---EYEYIFEYCE 94

Query: 79  RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I + +           N +  T   +     R   +   A       +  AH  DD 
Sbjct: 95  KLGITYELYRTDIYKILEENKREGTIYCSFCSRMRRGALYSKALEGGFNKLALAHHLDDA 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            E+ +M    + A +      M  T      L + RP +  R   I  F+   +I
Sbjct: 155 AESFFMNLTYNGAMRS-----MPPTYRAQNGLEVIRPLIFVRERQIIDFIASNHI 204


>gi|327310455|ref|YP_004337352.1| PP-loop domain-containing protein [Thermoproteus uzoniensis 768-20]
 gi|326946934|gb|AEA12040.1| PP-loop domain protein [Thermoproteus uzoniensis 768-20]
          Length = 334

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 25/209 (11%)

Query: 1   MFLSPIESVRFFVR--SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F S  E V   +R   ++ P   + VA+SGG DS+ LL  L  + +      ++  A +
Sbjct: 29  LFRSIEEKVWRTIRDERMIEPGDKVAVAISGGKDSLVLLDILGKLKARGRLKDVELEAFT 88

Query: 58  VDHCLRETAK----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------- 105
           ++      +         +V ++  R  +A+SV ++K     + L  A R          
Sbjct: 89  INEG-HPYSCFYRMSRADFVKELAGRYGVAYSVFNFKEVFGYSALELAERLWKSGVDIHM 147

Query: 106 -------RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
                  R   ++   K    T I TAH  DD+ +TV +       ++   L    D   
Sbjct: 148 CAVDGILRRKAMNLIGKRRGWTKIATAHNLDDEAQTVLLNVLMGNLKRFAWLD--LDDAE 205

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNIS 187
               +   +P    R E++  +     I 
Sbjct: 206 EKDLVRRIKPLKYVREEEVAVYAHYHGIP 234


>gi|169831045|ref|YP_001717027.1| PP-loop domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637889|gb|ACA59395.1| PP-loop domain protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 307

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL+ ++      R +     +   VSGG DS  LL  L   L D S  + +  A+ +D  
Sbjct: 20  FLTRVKKAVGDYRMIEPGDRVAAGVSGGKDSTALLYILA-YLRDYSHLRFELEAVMLDLG 78

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKT 116
                  E     + C RL +   +     +     K          + R  ++++ A +
Sbjct: 79  W-GEVDFEPH--REFCRRLGVPLHIHVRPVAGIIRDKEGMNPCKLCGKLRAGILNQAALS 135

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + A  +   H  DD +ET  +         G   +    T L +  L + RP +      
Sbjct: 136 LGANRVALGHHLDDVIETYLLNLI----FTGQMKTFRPSTYLTNTGLTLIRPLVYLPERV 191

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +      +     E+P   + R +R  ++  V ++ 
Sbjct: 192 LSGLTAGKGFPVIENPCPYNGRTKRDEMKAVVTELA 227


>gi|146295593|ref|YP_001179364.1| PP-loop domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409169|gb|ABP66173.1| PP-loop domain protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 235

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 87/237 (36%), Gaps = 19/237 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F    ++V  F   +     I V VS G DS+ +L  L  +       K    AI+VD  
Sbjct: 5   FSKVRKAVEDF-EMIEEGDKIAVGVSAGKDSLTMLYTLSFMRRFYP-KKFDVVAITVDMG 62

Query: 62  LRETAKDEVRYV--SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEH 113
                 + + ++   + C ++ +   +V         + + +    +     R  +++  
Sbjct: 63  F-----EGMDFLPIKEFCDKIDVEFHLVPSQIKQIVFDIRKEENPCSLCANLRRGILNST 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK++    +   H  DD +ET ++        +G        T L    +   RP +  +
Sbjct: 118 AKSLGCNKVALGHHLDDVVETFFLSLF----FEGRIYCFSPKTYLDRTQITTIRPMIYLK 173

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             D+R+   +  +    +    + +  R R++ FV+ +       K   F  ++  +
Sbjct: 174 EHDLRAAARKLELPVITNLCPANGKTNRQRMKEFVKSLKQFHPATKDLVFNAIKRNI 230


>gi|226287515|gb|EEH43028.1| PP-loop ATPase superfamily protein [Paracoccidioides brasiliensis
           Pb18]
          Length = 404

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 104/308 (33%), Gaps = 27/308 (8%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++L YP   + +  SGG DS  L   L ++ ++R    +  + +S+D  ++    D +  
Sbjct: 45  KALFYPGERVAIGASGGKDSTVLASVLKTL-NERHNYGLHLTLLSIDEGIKGYRDDSLET 103

Query: 73  VSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           V    ++  +   +V                  + G        R   +   A  +    
Sbjct: 104 VKRNAAQYSMPLEIVGYDELYGWTMDQVVAEVGKKGNCTYCGVFRRQALDRGAAKLGIKH 163

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++T H  DD  ETV M   R    +    + +  T     ++  S+P      ++I  + 
Sbjct: 164 VVTGHNADDVAETVMMNLLRGDLPRLSRATSIV-TESSASDIKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
             + + +            R   R  ++D++       +       V+    +A L+P  
Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLEKVRPSSILD-----IVRSGEDMARLVPPE 277

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           ++   + I   S   L  D+         S   CG Q   P  R +  +   L   +   
Sbjct: 278 ISSSGKHIPHTSVAALEGDAED------YSTGGCGSQNGPPNGRELVDIEKDLSEDQ--T 329

Query: 302 VSIGRVVI 309
            +   + I
Sbjct: 330 TATHEIQI 337


>gi|225678029|gb|EEH16313.1| VEG136 [Paracoccidioides brasiliensis Pb03]
          Length = 404

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 104/308 (33%), Gaps = 27/308 (8%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++L YP   + +  SGG DS  L   L ++ ++R    +  + +S+D  ++    D +  
Sbjct: 45  KALFYPGERVAIGASGGKDSTVLASVLKTL-NERHNYGLHLTLLSIDEGIKGYRDDSLET 103

Query: 73  VSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           V    ++  +   +V                  + G        R   +   A  +    
Sbjct: 104 VKRNAAQYSMPLEIVGYDELYGWTMDQVVAEVGKKGNCTYCGVFRRQALDRGAAKLGIKH 163

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++T H  DD  ETV M   R    +    + +  T     ++  S+P      ++I  + 
Sbjct: 164 VVTGHNADDVAETVMMNLLRGDLPRLSRATSIV-TESSASDIKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
             + + +            R   R  ++D++       +       V+    +A L+P  
Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLEKVRPSSILD-----IVRSGEDMARLVPPE 277

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
           ++   + I   S   L  D+         S   CG Q   P  R +  +   L   +   
Sbjct: 278 ISSSGKHIPHTSVAALEGDAED------YSTGGCGSQNGPPNGRELVDIEKDLSEDQ--T 329

Query: 302 VSIGRVVI 309
            +   + I
Sbjct: 330 TATHEIQI 337


>gi|148690725|gb|EDL22672.1| ATP binding domain 3 [Mus musculus]
          Length = 430

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 20/213 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A + V  SGG DS  L   L  +        I    ++VD  +       +  V  
Sbjct: 58  LPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---ITLHLVAVDEGIGGYRDAALEAVRS 114

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINA 119
             +R  +  ++V++++      + A AR                  R   + E A+ + A
Sbjct: 115 QAARWELPLTIVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARLVGA 174

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I+T H  DD  ETV M   R  A + +   G+  +      L   RP     ++++  
Sbjct: 175 THIVTGHNADDMAETVLMNFLRGDAGR-LARGGVLGSTGEGCALPRCRPLQFASQKEVVL 233

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   R++ +  +         R   R  ++ ++
Sbjct: 234 YAHFRHLRYFSEECVYAPEAFRGHARDLLKLLE 266


>gi|28210080|ref|NP_781024.1| PP family ATPase [Clostridium tetani E88]
 gi|28202516|gb|AAO34961.1| ATPase of the pp-loop superfamily [Clostridium tetani E88]
          Length = 236

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 80/214 (37%), Gaps = 15/214 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +I + +SGG DS+ LL  L       S  +    AI++D         +   + ++C 
Sbjct: 21  GDNIAIGLSGGKDSLALLYLLSKYRV-FSPERFNIIAITID----PGTNMDFSPLKNLCQ 75

Query: 79  RLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L +   ++         + + +    +     R  +++++AK +    +   H  +D +
Sbjct: 76  ELDVPLHIIDSNIKEIVFDIRKEKNPCSLCANLRRGILNDNAKKLGCNKVALGHHKNDAI 135

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G     +  T L   ++ + RP +      I+   ++ N    ++ 
Sbjct: 136 ETLLLSMF----YEGRISCFLPKTYLDRKDITVIRPMVYIEEAAIKRTSVKYNFPIIQNS 191

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +   +R  ++  +  +      L+ +    L
Sbjct: 192 CPANGFTKRESIKNLIESLKKDFPDLENRLLGAL 225


>gi|300707175|ref|XP_002995807.1| hypothetical protein NCER_101213 [Nosema ceranae BRL01]
 gi|239605025|gb|EEQ82136.1| hypothetical protein NCER_101213 [Nosema ceranae BRL01]
          Length = 311

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 76/213 (35%), Gaps = 17/213 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
               + + + +SGG DS  L   L  +    ++ ++K   + +D  ++      +  V +
Sbjct: 45  FAKGSTVGIGISGGKDSTVLAYVLDKLNKKYNY-ELKLVLLCIDEGIKGYRDYSIDTVHE 103

Query: 76  VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
               L +   V+S+ +              +          R   + E A+  +   I+T
Sbjct: 104 NSKDLNLKLQVLSFDDLFGVNMDSVVQKVGKRNNCTYCGVFRRQALEEAARKCSVDYIVT 163

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDIRS 179
            H  DD  ETV +   R    +  G +          + ++      +PF    +++I  
Sbjct: 164 GHNADDMAETVLLNLIRGDINRLYGCTNPVTNKHITDDGFVISLPRTKPFKNTYQKEIVL 223

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   + + +            R  VR F+++++
Sbjct: 224 YAFHKKLKYFSTECTYAPEASRGYVRNFIKELE 256


>gi|251781032|ref|ZP_04823952.1| ExsB family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085347|gb|EES51237.1| ExsB family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 239

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 81/211 (38%), Gaps = 16/211 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DS+ LL  L++     S  K +  AI+++    + +      +  +C 
Sbjct: 21  GDKIAVGLSGGKDSLTLLHLLNTY-KKFSPQKFELIAITLNPGGVDNSP-----LYTLCE 74

Query: 79  RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L +    +     K       +    +     R   +   A+ +    +   H  DD L
Sbjct: 75  NLEVPFYEIQTDIKKIVFDLRKEKNPCSLCANLRRGALHHSAENLGCNKVALGHHKDDAL 134

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +      + +G        T+++   + + RP +     +IRS + + N    ++P
Sbjct: 135 ETLMLSM----SYEGRINCFSPKTLMHKNTITLIRPMVYIEEHNIRSVVKKYNFPVIKNP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
              D + +R  ++  + +++      K   F
Sbjct: 191 CPADGKTKRQDIKELIDELNNKIPGFKKNLF 221


>gi|57237125|ref|YP_178137.1| PP-loop family protein [Campylobacter jejuni RM1221]
 gi|86153858|ref|ZP_01072061.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|57165929|gb|AAW34708.1| PP-loop family protein [Campylobacter jejuni RM1221]
 gi|85842819|gb|EAQ60031.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|284925411|gb|ADC27763.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315057558|gb|ADT71887.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 251

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L+ + +   F K +  A++    L     ++  ++   C 
Sbjct: 25  GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192


>gi|227876236|ref|ZP_03994352.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris ATCC 35243]
 gi|227843197|gb|EEJ53390.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris ATCC 35243]
          Length = 400

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 107/297 (36%), Gaps = 42/297 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA+SGG DS+  L A     + R        A++VDH  R  +  E    +     L 
Sbjct: 48  LVVALSGGPDSLA-LAAGLLRAATRRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHA------KTINATLIMTAHTFDDQLET 134
            A   V+  +  +   G   +ARE R+ L++  A      + + +    T HT DDQ ET
Sbjct: 107 YAQAKVLRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAET 166

Query: 135 VYMRSQRDYAEKGMGLS----------GMCDTILYDLN---------LWISRPFLRCRRE 175
           V +R  R  +   +             G+        N         +WISRP L  RRE
Sbjct: 167 VLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPPENSVKNDEDVLVWISRPLLGVRRE 226

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDIDLHALYLKMKKFQDL 226
                  Q  +    DP+N  +            RV +R+ V      AL       QD 
Sbjct: 227 TTHEACRQAGLIPAHDPTNELESEAKTAAGEALPRVAIRQRVLPELRRALG------QDP 280

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283
              +           + + + +   + +  ++  +  +   LR+  +  G    +P 
Sbjct: 281 APALARLAEQAYSDEMYLQVEAAEVLDKVFMDEATWDVGQPLRLDFSGIGKARIVPR 337


>gi|298674631|ref|YP_003726381.1| PP-loop domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298287619|gb|ADI73585.1| PP-loop domain protein [Methanohalobium evestigatum Z-7303]
          Length = 314

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 28/227 (12%)

Query: 2   FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+  +E  ++  +R   ++     I +A+SGG DS  LL  L+ +  DR    I   AI+
Sbjct: 38  FVEDVERKIKLTIRKHYNINRNETIAIALSGGKDSTVLLYILNKIFGDR--PDINLVAIT 95

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREAR 106
           +D  +     D ++   ++   L I H + S+ +            +   G  +     R
Sbjct: 96  IDEGISGYRLDTIQKSKELTDNLGIKHVIRSFADEYGMTLDELTQKQRSYGACSYCGVFR 155

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             L+++ AK   AT +   H  DD+ +T+ +   +    +   L  +      +      
Sbjct: 156 KKLLNKTAKEEGATRLAIGHNLDDEAQTILLNHLKGDISR---LVRLDPPKKIEGLTLRI 212

Query: 167 RPFLRCRREDIRSFLLQRNIS--WCEDPSNTDDRFERVRVRRFVRDI 211
           +P      +++  + +   +   + E P      +    +R  VRD+
Sbjct: 213 KPLRSIPEKEVALYAIVNELPMDFSECP------YAHEAIRGEVRDM 253


>gi|281418862|ref|ZP_06249881.1| PP-loop domain protein [Clostridium thermocellum JW20]
 gi|281407946|gb|EFB38205.1| PP-loop domain protein [Clostridium thermocellum JW20]
          Length = 237

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 17/234 (7%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  +R  ++    +     I V VSGG DS+ LL+AL  + +     K +  AI++  
Sbjct: 6   RLLGQIRRAIQDYNMIQDGDRIAVGVSGGKDSLTLLVALRQLKNFLPV-KFELKAITLTM 64

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHA 114
            + E    ++  V ++C R+ ++++V            + +    +     R   +   A
Sbjct: 65  GIGE---VDLSPVRELCERIDVSYTVEETLIGKIVFEERKEKNPCSLCANLRRGALHNTA 121

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    +  AH   D +ET  +        +G   +    T L    L++ RP +    
Sbjct: 122 KRLGCNKVALAHHMHDVIETFLLSLF----YEGRIHTFSPVTYLDRKGLYLIRPLIYTEE 177

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
           + ++ F+   NI    +P   +   +R  ++  + ++      +K   F  ++ 
Sbjct: 178 KLVKQFVKANNIITVANPCPANGYTKRQYIKDLLAELRKENRQIKSNIFGAIKR 231


>gi|86151330|ref|ZP_01069545.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315123720|ref|YP_004065724.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85841677|gb|EAQ58924.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315017442|gb|ADT65535.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 253

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L+ + +   F K +  A++    L     ++  ++   C 
Sbjct: 25  GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192


>gi|148926916|ref|ZP_01810594.1| hypothetical protein Cj8486_0114 [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844493|gb|EDK21601.1| hypothetical protein Cj8486_0114 [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 255

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L+ + +   F K +  A++    L     ++  ++   C 
Sbjct: 29  GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 83

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 84  EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 143

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +S  
Sbjct: 144 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 196


>gi|269976858|ref|ZP_06183832.1| tRNA(Ile)-lysidine synthase [Mobiluncus mulieris 28-1]
 gi|269934689|gb|EEZ91249.1| tRNA(Ile)-lysidine synthase [Mobiluncus mulieris 28-1]
          Length = 400

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 107/297 (36%), Gaps = 42/297 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA+SGG DS+  L A     + R        A++VDH  R  +  E    +     L 
Sbjct: 48  LVVALSGGPDSLA-LAAGLLRAATRRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHA------KTINATLIMTAHTFDDQLET 134
            A   V+  +  +   G   +ARE R+ L++  A      + + +    T HT DDQ ET
Sbjct: 107 YAQAKVLRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAET 166

Query: 135 VYMRSQRDYAEKGMGLS----------GMCDTILYDLN---------LWISRPFLRCRRE 175
           V +R  R  +   +             G+        N         +WISRP L  RRE
Sbjct: 167 VLLRLGRGASLLALSAMRPVDMLDSTSGLPRREEPPENSVKNDEDVLVWISRPLLGVRRE 226

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDIDLHALYLKMKKFQDL 226
                  Q  +    DP+N  +            RV +R+ V      AL       QD 
Sbjct: 227 TTHEACRQAGLIPAHDPTNELESEAKTAAGEALPRVAIRQRVLPELRRALG------QDP 280

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283
              +           + + + +   + +  ++  +  +   LR+  +  G    +P 
Sbjct: 281 APALARLAEQAYSDEMYLQVEAAEVLDKVFMDEATWDVGQPLRLDFSGIGKARIVPR 337


>gi|121612303|ref|YP_999842.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167004813|ref|ZP_02270571.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250191|gb|EAQ73149.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 251

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L+ + +   F K +  A++    L     ++  ++   C 
Sbjct: 25  GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGVTVIRPLIFVRERQLRDNATQNELSVI 192


>gi|320529269|ref|ZP_08030359.1| PP-loop family protein [Selenomonas artemidis F0399]
 gi|320138443|gb|EFW30335.1| PP-loop family protein [Selenomonas artemidis F0399]
          Length = 260

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 17/233 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   + +V  F   +     IL+ VSGG DS+ L  AL  +L +R       +A +V+  
Sbjct: 10  FSKLMRAVVEF-ELIENGDRILIGVSGGKDSIFLTYALA-ILRERLKKDFSIAAFTVN-- 65

Query: 62  LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114
                 +  +   ++  C  L +++ VV         ++            R   ++ +A
Sbjct: 66  --PQFDEPFDTDAIAAFCKSLDVSYEVVDVDIAGTIAAQDDKSPCFTCAFFRRGAVNRYA 123

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              N   +  AH  DD +ET  M         G   +    T L   NL + RP +  R 
Sbjct: 124 AEHNMNKVAYAHHHDDAVETFLMSLF----YSGQLNTFRPKTYLERTNLTVIRPLVYFRE 179

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +++   +     +    P   +    R  V+  +  + +    L       +R
Sbjct: 180 QELIDAIRYHGFTPLPSPCPHNGNTTRQTVKELIARLGVENPLLYDHLSAGMR 232


>gi|119872527|ref|YP_930534.1| PP-loop domain-containing protein [Pyrobaculum islandicum DSM 4184]
 gi|119673935|gb|ABL88191.1| PP-loop domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 330

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 78/206 (37%), Gaps = 28/206 (13%)

Query: 4   SPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             ++++R +   L+ P   + VA+SGG DS+ LL  L   L       +K  A +++   
Sbjct: 35  KVLKTIRRY--RLIKPGDYVAVAISGGKDSLVLLYILGKFLQRNLLKDVKIEAFTINEG- 91

Query: 63  RET------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------------- 103
                    +K E  YV ++ S+  I ++V  +K+    T +  A               
Sbjct: 92  HPYSCFYRMSKRE--YVKELASKFGIEYNVYHFKDIFGVTAIELAESLSKRGHEVHMCTI 149

Query: 104 --EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
               R   ++   +    T I TAH  DD+ +TV M        + +   G+ +      
Sbjct: 150 DGVLRRRAMNIIGRRRGWTKIATAHNLDDEAQTVLMNVLMGNLSR-LSWYGLYEDAEEKD 208

Query: 162 NLWISRPFLRCRREDIRSFLLQRNIS 187
            +   +P    R E+I  +     I 
Sbjct: 209 LIPRIKPLKYIREEEIAIYAYYHGIP 234


>gi|225016794|ref|ZP_03705986.1| hypothetical protein CLOSTMETH_00706 [Clostridium methylpentosum
           DSM 5476]
 gi|224950462|gb|EEG31671.1| hypothetical protein CLOSTMETH_00706 [Clostridium methylpentosum
           DSM 5476]
          Length = 273

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 20/221 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRY--VS 74
              I V VSGG DS+ LL  L  +         +  AI++D           E+ Y  + 
Sbjct: 53  GDRIAVGVSGGKDSVVLLAGLAQMRRFIGI-DYELVAITLDPRFG-----GVEMDYSPIE 106

Query: 75  DVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            +C  L I + V          + + +    +     R   + + AK      I   H +
Sbjct: 107 KLCESLGIEYVVKRTDIGQIVFDIRKEENPCSLCARMRRGALHDEAKAHGCNKIALGHHY 166

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET  M        +G        + L    L + RP +    +++R   ++  +  
Sbjct: 167 DDAVETFVMNLF----NEGRIGCFSPKSYLSRKELTLIRPLVFAPEKEVRRASVRCELPI 222

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
            +     D    R + + F+R+++  +   K + F  +R  
Sbjct: 223 VKSVCPADGVTNRQKTKEFLREMERESDGFKFRLFGAMRRA 263


>gi|21704170|ref|NP_663557.1| cytoplasmic tRNA 2-thiolation protein 1 [Mus musculus]
 gi|81879991|sp|Q99J10|CTU1_MOUSE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|13543164|gb|AAH05752.1| ATP binding domain 3 [Mus musculus]
 gi|74199268|dbj|BAE33164.1| unnamed protein product [Mus musculus]
          Length = 420

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 20/213 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A + V  SGG DS  L   L  +        I    ++VD  +       +  V  
Sbjct: 48  LPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---ITLHLVAVDEGIGGYRDAALEAVRS 104

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINA 119
             +R  +  ++V++++      + A AR                  R   + E A+ + A
Sbjct: 105 QAARWELPLTIVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARLVGA 164

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I+T H  DD  ETV M   R  A + +   G+  +      L   RP     ++++  
Sbjct: 165 THIVTGHNADDMAETVLMNFLRGDAGR-LARGGVLGSTGEGCALPRCRPLQFASQKEVVL 223

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   R++ +  +         R   R  ++ ++
Sbjct: 224 YAHFRHLRYFSEECVYAPEAFRGHARDLLKLLE 256


>gi|291549866|emb|CBL26128.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus torques L2-14]
          Length = 238

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 83/216 (38%), Gaps = 18/216 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76
              I V VSGG DS+ LL A+  +L +    + + SAI+ +        + + +  V+D 
Sbjct: 23  GDRIAVGVSGGKDSLTLLYAMK-LLQEFYPKRFELSAITCNVGF-----EGMDFTGVADF 76

Query: 77  CSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           C  L I +  V+ + ++        T   +   + R   + +    +    +  AH  DD
Sbjct: 77  CKHLEIPYEQVNTEIARIVFQENKDTRPCSLCAKLRKGAMYQRLGELGINKMAYAHNKDD 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET  M        +G   +    T L +  + + RP +      +  F+  + I   +
Sbjct: 137 FIETALMSLI----YEGRFYAFPPVTELPEAGVTVIRPMMYVPERGVAHFVADQGIRVVK 192

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           +    D   +R   ++ +  I+      K +    +
Sbjct: 193 NTCPVDGSTKRAYAKQLMEQINRETPGAKDRIMHAI 228


>gi|253582347|ref|ZP_04859570.1| ATPase [Fusobacterium varium ATCC 27725]
 gi|251835886|gb|EES64424.1| ATPase [Fusobacterium varium ATCC 27725]
          Length = 253

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 75/237 (31%), Gaps = 18/237 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP+         +     I V VSGG DS+  L AL  +    +    +   I +     
Sbjct: 26  SPVGRAMHKYNMIEAGDRIAVGVSGGKDSLTTLNALVRIKKIANL-DFEIIPIHIH---- 80

Query: 64  ETAKDEV-RYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKT 116
                     +   C +L +   V            K            R  ++    K 
Sbjct: 81  PNTDKASFEIIEKYCEKLELKLQVEHTNLSDMLFGEKEVKNPCFLCGRIRRGILYRVMKE 140

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                +   H  DD +ET  M        +G         +  +  + + RP      +D
Sbjct: 141 QGINKLALGHHKDDIIETFLMNVF----YQGNMKMMKPCYLSEEYGVTVIRPLAFVEEKD 196

Query: 177 IRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
           I  ++ +  +     + P    +   R+R++  +++I L    ++   F  ++  +N
Sbjct: 197 IIRYVNKLELPVVKSDCPYEISENSRRLRIKNLIKEISLENKDVRSVIFNSIKELLN 253


>gi|86149582|ref|ZP_01067812.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88597177|ref|ZP_01100412.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218561799|ref|YP_002343578.1| hypothetical protein Cj0118 [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839850|gb|EAQ57109.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88190238|gb|EAQ94212.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359505|emb|CAL34289.1| conserved hypothetical protein Cj0118 [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315926944|gb|EFV06306.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929914|gb|EFV09073.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 305]
          Length = 251

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L+ + +   F K +  A++    L     ++  ++   C 
Sbjct: 25  GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192


>gi|288572799|ref|ZP_06391156.1| PP-loop domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568540|gb|EFC90097.1| PP-loop domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 244

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 13/214 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             H++V +SGG DS+ LL+AL  +    S  K   SA SVD  +     D       +C 
Sbjct: 27  GDHVVVGLSGGKDSVFLLVALSQIRR-WSPVKFDLSACSVD--ISGGNWDVSPM-EKLCY 82

Query: 79  RLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L I + VV          + +    +     R  +++ +AK +    +   H  DD +E
Sbjct: 83  ELEIPYKVVPHPIEEIIRIREERSPCSFCANMRRGILNSYAKEMGGNTVALGHNLDDAVE 142

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T  M   R     G   S        + ++ + RP L    + I     +  +       
Sbjct: 143 TALMNLFR----TGRFRSFQPRIWQSNSDMNLIRPLLYLTEKAILQETSRMELPLVRYTC 198

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
                 ER R +  V D+      +K      LR
Sbjct: 199 PFSLETERTRAKELVSDLTARFPDVKQNILHALR 232


>gi|67516337|ref|XP_658054.1| hypothetical protein AN0450.2 [Aspergillus nidulans FGSC A4]
 gi|40747393|gb|EAA66549.1| hypothetical protein AN0450.2 [Aspergillus nidulans FGSC A4]
 gi|259489303|tpe|CBF89461.1| TPA: PP-loop ATPase superfamily protein, putative (AFU_orthologue;
           AFUA_1G04710) [Aspergillus nidulans FGSC A4]
          Length = 422

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 16/211 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL +P   I +  SGG DS  L   L ++ ++R    +    +S+D  +R    D +  V
Sbjct: 46  SLFHPGERIAIGASGGKDSTVLASVLKTL-NERYEYGLDLCLLSIDEGIRGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V                  + G        R   +   A+ +    +
Sbjct: 105 KRNAVQYNMPLVIVGYGELYGWTMDQVVEQIGKKGNCTYCGVFRRQALDRGAERLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +T H  DD  ETV M   R    +   G S +  +   D  +  S+P      ++I  + 
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTGSAASD--IKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             + + +            R   R  ++D++
Sbjct: 223 HHKQLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|289620220|emb|CBI53078.1| unnamed protein product [Sordaria macrospora]
          Length = 789

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 28/168 (16%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD--------------RSFGKI--KFSAISVDHCL 62
              +  A+SGG DSM L    + +  D              R    I  K  A+ +DH L
Sbjct: 40  HRQVACAISGGVDSMALAFLFNRLKQDTHSLISSGPSMEAFRISDNILNKVRAVIIDHGL 99

Query: 63  RETAKDEVRYVSDVCSR-----LRIAHSVVSWK-------NSKPQTGLMAAAREARYALI 110
           RE + +E R V++V        L      ++W+       + K Q  +    R+ RY   
Sbjct: 100 REGSDEEARKVANVIRTKFPDFLYPVIEPINWRSELGPGVDPKTQPNIETLGRKLRYVAF 159

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
           +   ++ NA  + TAH  DD+ ET+ MR       +G+        I 
Sbjct: 160 ASACRSYNAVSLFTAHHEDDEYETILMRMISGRGYRGLQGIPPAADIP 207



 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRV 204
           KG  +  + +    D  + I RP L   ++ + +   + +I W ED +N D  F  R  +
Sbjct: 282 KGGDVPPVPEVEAEDGGIMIYRPLLGFSKDRLTATCEENDIPWFEDYTNADPTFTPRNAI 341

Query: 205 RRFVRDIDLHALYLKMKKFQ 224
           R  V+  +L A   K    Q
Sbjct: 342 RYLVKHHNLPAALQKPAILQ 361


>gi|325280659|ref|YP_004253201.1| PP-loop domain-containing protein [Odoribacter splanchnicus DSM
           20712]
 gi|324312468|gb|ADY33021.1| PP-loop domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 244

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 76/237 (32%), Gaps = 30/237 (12%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--R 71
            L+ P   ILV VSGG DS+ LL  L  + +          A  +     E    EV   
Sbjct: 26  ELIEPGDRILVGVSGGKDSLALLEVLA-LRARDPKQNYTVVAAHIAV---ENVAYEVDGE 81

Query: 72  YVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           YV   C +L +     ++ +         +       R   +   AK      +   H  
Sbjct: 82  YVRQFCEQLGVEFIHRTIATAVKEDSGKPVCFVCSWNRRKTLFGIAKEYGCNKLALGHHR 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS- 187
           DD +E++ M         G   S      ++D    + RPF+    E+   +   RN   
Sbjct: 142 DDAIESLLMSMM----FNGTIASMPPKLAMFDRTFTLIRPFIYLTDEETTRYAAYRNFKK 197

Query: 188 -----WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
                  E  +N          R  V +I      L      +L   + N  +  +P
Sbjct: 198 QKKNCPHERATN----------RHAVAEIIRQMEALSPHVKGNLFAAMKNIQSEYLP 244


>gi|157414431|ref|YP_001481687.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 81116]
 gi|157385395|gb|ABV51710.1| hypothetical protein C8J_0111 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747075|gb|ADN90345.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni M1]
 gi|315931512|gb|EFV10479.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni 327]
          Length = 251

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L+ + +   F K +  A++    L     ++  ++   C 
Sbjct: 25  GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGVTVIRPLIFVRERQLRDNATQNELSVI 192


>gi|170759818|ref|YP_001788613.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169406807|gb|ACA55218.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 249

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 15/217 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +         +     I VAVSGG DS+ LL  L  ++       I+  AI VD  
Sbjct: 12  FLKYVRRAMDDYNMISPRDKIAVAVSGGKDSIFLLFCLK-LIQLTDIKDIEIVAIHVDLG 70

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAK 115
           L      ++  +   C +  +   +          N + +    +   + +   +   +K
Sbjct: 71  L----DMDLEPLKIFCKKNSVDLVIEKTNIANVVFNERKEKNPCSLCSKLKKGCLVRISK 126

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           +I AT I   H  DD +ET++M   +   + G     +     Y   + I RP +  R +
Sbjct: 127 SIGATKIALGHNCDDVIETLFMNVLK-VGKFGSFSPHIDYKNKY---VHIIRPLIYLRED 182

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            I++ + + N+   +     D +  R  ++  +  ++
Sbjct: 183 LIKNLVKKYNLPVVKSTCPEDKKTTREEMKNLMFKLE 219


>gi|283955284|ref|ZP_06372784.1| hypothetical protein C414_000440022 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793198|gb|EFC31967.1| hypothetical protein C414_000440022 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 251

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L+  L+ + +   F K +  A++    L     ++  ++   C 
Sbjct: 25  GDRVLLGLSGGKDSLALVHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEQGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R   +Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNAVQNELSVI 192


>gi|292670148|ref|ZP_06603574.1| ExsB family protein [Selenomonas noxia ATCC 43541]
 gi|292648100|gb|EFF66072.1| ExsB family protein [Selenomonas noxia ATCC 43541]
          Length = 260

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 17/217 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   + +V  F   +     IL+ VSGG DS+ L  AL  +L +R       +A +V+  
Sbjct: 10  FSKLMRAVVEF-ELIENGDRILIGVSGGKDSIFLTYALA-ILRERLKKDFYIAAFTVN-- 65

Query: 62  LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114
                    +   ++  C  L I + VV         ++            R   ++ +A
Sbjct: 66  --PQFDKVFDTGSIAAFCKNLNIPYEVVDVDIAGAIAAQNDKSPCFTCAFFRRGAVNRYA 123

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +  AH  DD +ET  M         G   +    T L   ++ + RP +  R 
Sbjct: 124 VAHKMNKVAYAHHHDDAVETFLMSLF----YSGQLSTFRPKTYLDKTDITVIRPLVYFRE 179

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
           ++I + +     +    P   +    R  V+  +  +
Sbjct: 180 QEIINAVQYHGFTPIPSPCPHNGNTTRQTVKELIAKL 216


>gi|205356493|ref|ZP_03223257.1| hypothetical protein Cj8421_0117 [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345680|gb|EDZ32319.1| hypothetical protein Cj8421_0117 [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 251

 Score =  111 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L+ + +   F K +  A++    L     ++  ++   C 
Sbjct: 25  GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHTHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192


>gi|237749968|ref|ZP_04580448.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229374379|gb|EEO24770.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 295

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 20/228 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DSM LL  + + +   +  K +F A+++D+  R     E  Y+ + C 
Sbjct: 67  GDKILLGLSGGKDSM-LLATIFAYMKKHAPFKFEFLAMTIDYG-RGG---EYEYIFEYCK 121

Query: 79  RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I + +   +       + K  T   +     R   +   A       I  AH  DD 
Sbjct: 122 KLNIPYELNRTQIFKILENHKKEGTIYCSFCSRMRRGELYSMALERGFNKIALAHHLDDA 181

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+  M    + A     L  M         L + RP +  R   I  F+   NI    D
Sbjct: 182 AESFMMNLTYNGA-----LRSMPPYYKAQNGLGVIRPLIFVRERQIIDFIASNNIYIAPD 236

Query: 192 ---PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
              P N     +R + R   +++           F+ L+   +N  A 
Sbjct: 237 CNCPINWLPEDKRPKARAANKELLKDLESKNPNLFKSLKNAFSNIHAQ 284


>gi|121533524|ref|ZP_01665352.1| PP-loop domain protein [Thermosinus carboxydivorans Nor1]
 gi|121308083|gb|EAX48997.1| PP-loop domain protein [Thermosinus carboxydivorans Nor1]
          Length = 266

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 14/215 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-VSDVC 77
              IL+ +SGG DS  L  AL  +L D S  K + +AI++D      + D     ++  C
Sbjct: 26  GDRILIGLSGGKDSSFLTYALA-LLRDHSPRKFELAAITLDPMF---STDFATAGLAAFC 81

Query: 78  SRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + L I                       +    R   I+  AK      I  AH  DD +
Sbjct: 82  ADLGIPFHTFKIDIAGAIARNDGKDPCYSCAFFRRGAINRFAKENGFNKIAYAHHHDDAV 141

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  M        K    + +  T L    L + RP +  R +++R  +     +    P
Sbjct: 142 ETFLMSILYSGQIK----TFLPKTYLDRTGLTVIRPLIYFREKELRRTIQYHGFTPIPSP 197

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              + + +R  ++  +R ++     +       +R
Sbjct: 198 CPYNGKTKRQEIKELIRGLERKNKLIYTHLSAAMR 232


>gi|18313243|ref|NP_559910.1| hypothetical protein PAE2295 [Pyrobaculum aerophilum str. IM2]
 gi|18160762|gb|AAL64092.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 324

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 28/211 (13%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F S    V   +RS   +V   ++ +AVSGG DS+ LL  L  +    + G +K  A +
Sbjct: 28  LFRSVERKVVETIRSEKLIVPGDYVAIAVSGGKDSLVLLYILGRLKERGTLGGVKMEAFT 87

Query: 58  VDHC------LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------ 105
           ++         R + +D   YV D+ S+  I ++V  +K+    T +  + R A      
Sbjct: 88  INEGHPYSCFYRMSRRD---YVRDLASKFGIEYNVYHFKDIFGVTAMELSERLAKAGHEV 144

Query: 106 ---------RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
                    R   ++   K    T I TAH  DD+ +TV +        +        D 
Sbjct: 145 HMCTIDGVLRRRAMNIIGKARGWTKIATAHNLDDEAQTVMLNVLMGNLSRFSWYGRYEDA 204

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
              DL +   +P    R E+I  +     + 
Sbjct: 205 EEKDL-IPRIKPLKYIREEEIALYAYYHGLP 234


>gi|226711412|sp|A2Q879|CTU1_ASPNC RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|134054862|emb|CAK36876.1| unnamed protein product [Aspergillus niger]
          Length = 341

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 16/211 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL +P   + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V
Sbjct: 46  SLFHPGERVAIGASGGKDSTVLAAVLKTL-NERYNYGLDLCLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS                 + G        R   +   A  +    +
Sbjct: 105 KRNAQQYNMPLVIVSYGDLYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAAKLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +T H  DD  ETV M   R    +   G S +  +   D  +  S+P      ++I  + 
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTGSAASD--IKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             R + +            R   R  ++D++
Sbjct: 223 HHRQLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|313681900|ref|YP_004059638.1| pp-loop domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154760|gb|ADR33438.1| PP-loop domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 252

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 70/189 (37%), Gaps = 17/189 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ILV +SGG DS+ ++ AL      R+  K +  A++V + +     +++  +   C+
Sbjct: 26  GDRILVGLSGGKDSLTMVHALRE-QQRRAPFKFEILAVTVTYGM----GEDLSALIAHCA 80

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H +       ++    +  +   +     R   +   AK      +   H  DD 
Sbjct: 81  EHEIPHKIYETNTYEIAADKIRQNSSFCSFFSRMRRGALYSAAKEYGCNKVALGHHLDDA 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+ +M    +   +      +         L + RP ++ R   + +  L+  +    D
Sbjct: 141 AESFFMNLIYNGHMR-----ALAPKYKAGNGLIVIRPLIQLRERQLAACALENEMPTIGD 195

Query: 192 PSNTDDRFE 200
            +    RF+
Sbjct: 196 EACPSMRFD 204


>gi|187935562|ref|YP_001886423.1| ExsB family protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723715|gb|ACD24936.1| ExsB family protein [Clostridium botulinum B str. Eklund 17B]
          Length = 239

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 16/211 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DS+ LL  L++     S    +  AI+++    + +      +  +C 
Sbjct: 21  GDKIAVGLSGGKDSLTLLHLLNTY-KKFSPQNFELIAITLNPGGVDNSP-----LYKLCE 74

Query: 79  RLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L +    +     K       +    +     R   +  +A+ +    +   H  DD L
Sbjct: 75  NLEVPFYEIQTDIKKIVFDLRKEKNPCSLCANLRRGALHHNAEKLGCNKVALGHHKDDAL 134

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +        +G        T+++   + + RP +     +I+S + + N    ++P
Sbjct: 135 ETLMLSMC----YEGRINCFSPKTLMHKNTITLIRPMVYIEEHNIKSIVKKFNFPVIKNP 190

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
              D + +R  V+  + +++      K   F
Sbjct: 191 CPADGKTKRQDVKELIDELNNKIPGFKKNLF 221


>gi|268610850|ref|ZP_06144577.1| PP-loop domain-containing protein [Ruminococcus flavefaciens FD-1]
          Length = 248

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 16/218 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDV 76
              I V VSGG DSM +L  L  +   R F  I +     ++D C     K +   +SD 
Sbjct: 21  GDRICVGVSGGKDSMVMLYGLALL---RRFIGINYDIAGLTLDPCF-GGVKGDYSAISDF 76

Query: 77  CSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           C+   I + VV  +      + + +    +     R   +    K +    I   H +DD
Sbjct: 77  CAEHDIEYHVVETQIGEIVFDVRKEPNPCSLCARMRRGALHNETKKLGCNKIALGHNYDD 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET  M        +G          L    + + RP +    + IRS  L+  +   +
Sbjct: 137 AVETFIMNLF----TEGRIGCFAPTNYLSRKEITLIRPLVFAPEKAIRSAALRNQLPIVK 192

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
                D    R R + F+ +++      K + F  +R 
Sbjct: 193 SVCPADGHTNRQRTKEFLEEMERKDKGFKDRIFGAMRR 230


>gi|317026023|ref|XP_001388768.2| cytoplasmic tRNA 2-thiolation protein 1 [Aspergillus niger CBS
           513.88]
          Length = 415

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 16/211 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL +P   + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V
Sbjct: 46  SLFHPGERVAIGASGGKDSTVLAAVLKTL-NERYNYGLDLCLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS                 + G        R   +   A  +    +
Sbjct: 105 KRNAQQYNMPLVIVSYGDLYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAAKLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +T H  DD  ETV M   R    +   G S +  +   D  +  S+P      ++I  + 
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTGSAASD--IKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             R + +            R   R  ++D++
Sbjct: 223 HHRQLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|294496034|ref|YP_003542527.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
 gi|292667033|gb|ADE36882.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
          Length = 305

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 20/233 (8%)

Query: 2   FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F   +E  V+  +R   ++     I VA+SGG DS   L  L+ +   R    ++  AI+
Sbjct: 31  FSEDVERKVKLTIRKNYNIGKNEKIAVALSGGKDSCVALYILNKIFGKRR--DLELVAIT 88

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-----------R 106
           VD  +    +  + Y   + S + + H + S+ +    +    AA+E            R
Sbjct: 89  VDEGISVYRERSIEYARKLTSDIGVKHLIHSFADEYDTSLDELAAKERVHGACSYCGVLR 148

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            +L++  A  I A  ++T H  DD+ +T+ M       E+   +  +      +  +  +
Sbjct: 149 KSLVNRIALDIGAKRLVTGHNLDDEAQTIMMNHLGGDVER---MIRLSPPRELEGLVLRA 205

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           +P  +    ++  +    +I              R  VR  + D +      K
Sbjct: 206 KPLRKIPENEVELYAKVNDIPVDISLCPYKHEALRNEVRLMLDDFEQRHPGTK 258


>gi|148557402|ref|YP_001264984.1| tRNA(Ile)-lysidine synthetase [Sphingomonas wittichii RW1]
 gi|148502592|gb|ABQ70846.1| tRNA(Ile)-lysidine synthetase [Sphingomonas wittichii RW1]
          Length = 319

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 117/307 (38%), Gaps = 27/307 (8%)

Query: 9   VRFFVRSLVY-----PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           V  F+  L+       A + +AVSGG DS      +  +    +    +  A +VDH LR
Sbjct: 14  VSRFLADLLSLLPDDGARLGLAVSGGPDS------MAMLHLAAAACPGRVEAATVDHGLR 67

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             A  E   V+  C+ L + H  +     +P   + AAAR ARYA ++  A       I 
Sbjct: 68  AEAAAEAALVARACAALGVPHMTLRVTV-EPTASIQAAARRARYAALAAWAAGQGLPAIA 126

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFL 181
           TAH  DDQ ET+ MR  R     G GLSG+           + + RP L  RR ++ + +
Sbjct: 127 TAHHADDQAETLLMRLAR-----GAGLSGLAGIRARRDIGGVLLVRPLLGWRRAELAAIV 181

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRD----IDLHALYLKMKKFQDLRVKVNNAVAML 237
               +   +DPSN D R +R   R  +      +D   L        +    ++  V   
Sbjct: 182 AA--VETVDDPSNADPRHDRTHARALLAGAGDRLDPLRLAASAAHLAEADAALDWLVEEA 239

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
           I   +       IA   DI  +   +   +L          +  P   +    +   +  
Sbjct: 240 IRSRVDRFDDGRIA--ADIEGLPREVRRRILARLVGEADSAVDGPALETAMARLDAGQVA 297

Query: 298 KRGCVSI 304
             G + +
Sbjct: 298 SLGALKL 304


>gi|283955562|ref|ZP_06373057.1| hypothetical protein C1336_000020091 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283793023|gb|EFC31797.1| hypothetical protein C1336_000020091 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 251

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L+ + +   F K +  A++    L     ++  ++   C 
Sbjct: 25  GDRVLLGLSGGKDSLALAHLLNRMQAHAPF-KFELEAVT----LSYGMGEDYSHLHAHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGVIVIRPLIFVRERQLRDNATQNELSVI 192


>gi|313896328|ref|ZP_07829881.1| PP-loop family protein [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975127|gb|EFR40589.1| PP-loop family protein [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 260

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 17/233 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   + +V  F   +     IL+ VSGG DS+ L  AL  +L +R       +A +V+  
Sbjct: 10  FSKLMRAVVEF-ELIENGDRILIGVSGGKDSIFLTYALA-ILRERLKKDFSIAAFTVN-- 65

Query: 62  LRETAKD--EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114
                 +  +   ++  C  L +++ VV         ++            R   ++ +A
Sbjct: 66  --PQFDEPFDTDAIAAFCKSLDVSYEVVDVDIAGTIAAQDDKSPCFTCAFFRRGTVNRYA 123

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              N   +  AH  DD +ET  M         G   +    T L   NL + RP +  R 
Sbjct: 124 AEHNMNKVAYAHHHDDAVETFLMSLF----YSGQLNTFRPKTYLERTNLTVIRPLVYFRE 179

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +++   +     +    P   +    R  V+  +  + +    L       +R
Sbjct: 180 QELIDAIRYHGFTPLPSPCPHNGNTTRQTVKELIARLGMENPLLYDHLSAGMR 232


>gi|121702849|ref|XP_001269689.1| PP-loop ATPase superfamily protein, putative [Aspergillus clavatus
           NRRL 1]
 gi|119397832|gb|EAW08263.1| PP-loop ATPase superfamily protein, putative [Aspergillus clavatus
           NRRL 1]
          Length = 417

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 16/213 (7%)

Query: 13  VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
             SL YP   + +  SGG DS  L   L ++ ++R    ++   +S+D  +R    D + 
Sbjct: 44  ASSLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLELCLLSIDEGIRGYRDDSLE 102

Query: 72  YVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            V     +  +   +V                  + G        R   +   A  +   
Sbjct: 103 TVKRNAVQYDMPLEIVGYSELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGIK 162

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            ++T H  DD  ETV M   R    +   G S + D+   D  +  S+P      ++I  
Sbjct: 163 HVVTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTDSAASD--IKRSKPLKYAYEKEIVL 220

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   + + +            R   R  ++D++
Sbjct: 221 YAHHKKLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|307701216|ref|ZP_07638238.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris FB024-16]
 gi|307613610|gb|EFN92857.1| tRNA(Ile)-lysidine synthetase [Mobiluncus mulieris FB024-16]
          Length = 400

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 108/297 (36%), Gaps = 42/297 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA+SGG DS+  L A     + R        A++VDH  R  +  E    +     L 
Sbjct: 48  LVVALSGGPDSLA-LAAGLLRAATRRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHA------KTINATLIMTAHTFDDQLET 134
            A   V+  +  +   G   +ARE R+ L++  A      + + +    T HT DDQ ET
Sbjct: 107 YAQAKVLRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAET 166

Query: 135 VYMRSQRDYAEKGMGLS----------GMCDTILY---------DLNLWISRPFLRCRRE 175
           V +R  R  +   +             G+               D+ +WISRP L  RRE
Sbjct: 167 VLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPLENSVKNDEDVLVWISRPLLGVRRE 226

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDIDLHALYLKMKKFQDL 226
                  Q  +    DP+N  +            RV +R+ V      AL       QD 
Sbjct: 227 TTHEACRQAGLIPAHDPTNELESEAKTAAGEALPRVAIRQRVLPELRRALG------QDP 280

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283
              +           + + + +   + +  ++  +  +   LR+  +  G    +P 
Sbjct: 281 APALARLAEQAYSDEMYLQVEAAEVLDKVFMDEATWDVGQPLRLDFSGIGKARIVPR 337


>gi|160915129|ref|ZP_02077342.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991]
 gi|158432928|gb|EDP11217.1| hypothetical protein EUBDOL_01137 [Eubacterium dolichum DSM 3991]
          Length = 319

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 106/307 (34%), Gaps = 40/307 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRYV 73
              I V VSGG DSM LL ALH     +     +   I +     +   RE        V
Sbjct: 23  GDRIAVGVSGGKDSMVLLSALHMYSKFKG-KNFQVVGIHIKLGFPNMDFRE--------V 73

Query: 74  SDVCSRLRIAHSVVSWKN-----SKPQTG---LMAAAREARYALISEHAKTINATLIMTA 125
              C +L I   ++  K        P        +   + + A + E AK  N   +   
Sbjct: 74  VSYCEQLGIEFHIIDSKVYEILQKHPDANGNIKCSLCSKFKKATVIEAAKQFNCHKVAFG 133

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+ M +       G     +    +   ++   RP +    EDI     + N
Sbjct: 134 HHSDDAVETLLMNAIFG----GKLAVFLPKMYMSRTDITFIRPLIYAFEEDILIAQQKNN 189

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK----KFQDLRVKVNNAVAMLIPKY 241
           I + E  +  +D F +   R+ ++++ LH  Y K       FQ++       V +     
Sbjct: 190 IPYVE-STCPNDGFTQ---RQEMKEM-LHEFYKKYPMARYNFQNMLSN-EEQVELWHKTT 243

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK--R 299
             V  R+     Q +L      L    R    I   +  LP  R   + +    + +   
Sbjct: 244 ARVAKRNHDKPMQILLEEQDLQLGQRGRHFFLIYSPK-QLPDLRH-HKKIPHSDADRLLS 301

Query: 300 GCVSIGR 306
             +++  
Sbjct: 302 KQLTLHD 308


>gi|313112922|ref|ZP_07798568.1| PP-loop family protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624827|gb|EFQ08136.1| PP-loop family protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 259

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYV 73
           +     ++V VSGG DS+ L I L  +     F      A+++D     R     +   +
Sbjct: 24  IAPGDKVMVGVSGGKDSVALTIGLAELRKYIGF-DFTVQAVTLDPQFGGRP---MDYTVL 79

Query: 74  SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            ++ ++  I + +   +      + + +    A   + R   +   A+ +    +   H 
Sbjct: 80  QELFAQYDIPYEIRRTEIGPVVFDYRKEKNPCALCAKLRRGALHTAAQELGCNKVALGHH 139

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET YM   R    +G        T L   +L + RP L    +++ S +    + 
Sbjct: 140 LDDAVETFYMNLWR----EGRIGCFSPVTYLSRRDLTLIRPMLLATEQEVISAVNAEGLP 195

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +     D    R + + FV++        + K    L+
Sbjct: 196 IVKSVCPADGVTVREQTKEFVKERCRTDHAFRQKTLHALQ 235


>gi|306819511|ref|ZP_07453218.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304647803|gb|EFM45121.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 400

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 108/297 (36%), Gaps = 42/297 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA+SGG DS+  L A     + R        A++VDH  R  +  E    +     L 
Sbjct: 48  LVVALSGGPDSLA-LAAGLLRAASRRVPAGNLVALTVDHEWRAESASEAAAAAKCARDLG 106

Query: 82  IA-HSVVSWKNSKPQTGLMAAAREARYALISEHA------KTINATLIMTAHTFDDQLET 134
            A   V+  +  +   G   +ARE R+ L++  A      + + +    T HT DDQ ET
Sbjct: 107 YAQAKVLRAQIPETGAGPEGSAREMRWRLMTRAALSIARERKLKSIHFFTGHTLDDQAET 166

Query: 135 VYMRSQRDYAEKGMGLS----------GMCDTILY---------DLNLWISRPFLRCRRE 175
           V +R  R  +   +             G+               D+ +WISRP L  RRE
Sbjct: 167 VLLRLGRGASLLALSAMWPVDMLDSTSGLPRREEPLENSVKNDEDVLVWISRPLLGVRRE 226

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDIDLHALYLKMKKFQDL 226
                  Q  +    DP+N  +            RV +R+ V      AL       QD 
Sbjct: 227 TTHEACRQAGLIPAHDPTNELESEAKTAAGEALPRVAIRQRVLPELRRALG------QDP 280

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283
              +           + + + +   + +  ++  +  +   LR+  +  G    +P 
Sbjct: 281 APALARLAEQAYSDEMYLQVEAAEVLDKVFMDEATWDVGQPLRLDFSGIGKARIVPR 337


>gi|297617269|ref|YP_003702428.1| PP-loop domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145106|gb|ADI01863.1| PP-loop domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 235

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 17/230 (7%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R 63
            ++      + +     + + +SGG DS+ LL AL  +    +  +    AI+VD     
Sbjct: 11  KVKRANLKYQMIGNGDRVALGLSGGKDSLALLHALIQLRR-YTPLQFDIIAITVDLGFGS 69

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTI 117
           + +  E       C  L +   V            + +    +     R   +   A   
Sbjct: 70  DHSGLE-----QHCRELNVPLIVEPTNIGRIVFEERKENSPCSLCSNLRKGALHRVALAE 124

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   +  AH  DD + T +M      A +G        + L    L + RP +      I
Sbjct: 125 NCNKVALAHHLDDAVVTFFMSM----AYEGQARCFKPSSFLDRTGLTLVRPLVYVPENLI 180

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
                + N+    +P     + +R  +++++  +D H    K+     + 
Sbjct: 181 IRLCKKLNLPVESNPCPAAGQTKRALIQKWLAVLDNHHPQAKLHFLTAIE 230


>gi|254459104|ref|ZP_05072527.1| PP-loop family protein [Campylobacterales bacterium GD 1]
 gi|207084375|gb|EDZ61664.1| PP-loop family protein [Campylobacterales bacterium GD 1]
          Length = 253

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 17/181 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ILV +SGG DS+ ++ A+      R+  K +F A++V + + E   +  ++    C 
Sbjct: 27  GDKILVGLSGGKDSLTMIHAMKE-QQHRAPFKFEFIAVTVGYGMGENFDNLAKH----CK 81

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I + V       ++ +  +  +   +     R   +   A+      +   H  DD 
Sbjct: 82  EYDIPYIVHDTKIYDLAEEKIRKNSSFCSFFSRMRRGTLYGIAEEQGCNKLALGHHMDDA 141

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+ +M    +   + +           +  L I RP ++ R   + +F+L  +I+   D
Sbjct: 142 AESFFMNFIYNGQMRSL-----APKYRAENGLIIIRPLIQMRERQLSAFVLDNDIAAIGD 196

Query: 192 P 192
            
Sbjct: 197 E 197


>gi|238922390|ref|YP_002935904.1| hypothetical protein EUBELI_20626 [Eubacterium eligens ATCC 27750]
 gi|238874062|gb|ACR73770.1| Hypothetical protein EUBELI_20626 [Eubacterium eligens ATCC 27750]
          Length = 242

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 81/216 (37%), Gaps = 18/216 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76
              I V VSGG DS+ LL A+  +L+     K +  AI+ +        + + +  V   
Sbjct: 23  GDKIAVGVSGGKDSLALLHAMK-ILNRFYPKKFELYAITCNVGF-----EGMDFTGVRKF 76

Query: 77  CSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           C  + + +  V  + +K            +   + R   + +    +    I  AH  DD
Sbjct: 77  CESINVPYEQVDTEIAKIVFEDNKDERPCSLCAKLRKGAMYKRLGELGINKIAYAHNKDD 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET  M        +G   +    T L +  + + RP +    + + +F++ + I   +
Sbjct: 137 FIETALMSLI----YEGRFYAFPPVTYLPEAGVTVIRPMMYAPEKGVANFVINQGIKVVK 192

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           +    D   +R   ++ +  I+      K +    +
Sbjct: 193 NTCPVDGSTKREYAKQLMEQINRENPGTKDRIMHAV 228


>gi|268679168|ref|YP_003303599.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617199|gb|ACZ11564.1| PP-loop domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 250

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 25/222 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              IL+ +SGG DS+ L   L  +     F   +F A+++ + +     +E+  +   C 
Sbjct: 25  GDRILLGLSGGKDSLSLAHILKHMQRVAPF-DFEFKAVTITYGM----GEELDTLHQHCV 79

Query: 79  RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I H +V  K         +  +   +     R   +  +A     T +  AH  DD 
Sbjct: 80  EHEIDHEIVDTKIFDLAQDKIRENSSFCSFFSRMRRGALYTYALEYGYTKLALAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +E+ +M    +       L  M         L + RP +  R   +R    + N+    D
Sbjct: 140 VESFFMNFSYNGT-----LRSMPPIYTAQNGLHVIRPLIHARERQLRDCAKEHNMPTIGD 194

Query: 192 PSNTDDRFE------RVRVRRFVRDIDL--HALYLKMKKFQD 225
            +    RF+      R R +  +  ++     L++ +KK  +
Sbjct: 195 EACPAMRFDVKMPVIRTRTKEMLAQMEQENPELFISLKKAFE 236


>gi|303388765|ref|XP_003072616.1| Adenine nucleotide alpha hydrolase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303301757|gb|ADM11256.1| Adenine nucleotide alpha hydrolase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 316

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 76/224 (33%), Gaps = 17/224 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       I + VSGG DS  L   L  +L+ R    I+   +SVD  +       +  V
Sbjct: 43  KMFKEGDKIGIGVSGGKDSTVLAYVL-DLLNKRHKYGIELILLSVDEGIAGYRDHSIETV 101

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                   +   +VS++           +   + G        R   + E A+ +   +I
Sbjct: 102 CKNSKSFGLKLRIVSFEEIFGVTMDGIAHKTGKRGNCTYCGVFRRQALEEAAREMGVDMI 161

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-----RPFLRCRREDI 177
            T H  DD  ETV +   R    +    +        + +  +      +PF    +++I
Sbjct: 162 ATGHNADDMAETVLLNVIRGDISRLGRCTREKTKEQKNGDGKVISLSRLKPFKHIYQKEI 221

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
             +   + + +            R  +R  V+ ++     + ++
Sbjct: 222 VLYAFYKKLEYFSTECTYSFGASRGDLRMLVKQLEREDPRVILE 265


>gi|157819969|ref|NP_001099721.1| cytoplasmic tRNA 2-thiolation protein 1 [Rattus norvegicus]
 gi|226711429|sp|B1WBV0|CTU1_RAT RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|149056111|gb|EDM07542.1| ATP binding domain 3 (predicted) [Rattus norvegicus]
 gi|171847383|gb|AAI61898.1| ATP binding domain 3 [Rattus norvegicus]
          Length = 382

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 20/213 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A + V  SGG DS  L   L  +        I    ++VD  +       +  V  
Sbjct: 48  LPQGAVVAVGASGGKDSTVLAHVLRELAPRLG---ITLHLVAVDEGIGGYRDAALEAVRS 104

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINA 119
             +R  +  ++V++++      + A AR                  R   + E A+ + A
Sbjct: 105 QAARWELPLTIVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARLVGA 164

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I+T H  DD  ETV M   R  A + +   G+  +      L   RP     ++++  
Sbjct: 165 THIVTGHNADDMAETVLMNFLRGDAGR-LARGGVLGSTGEGCALPRCRPLQFASQKEVVL 223

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   R++ +  +         R   R  ++ ++
Sbjct: 224 YAHFRHLRYFSEECVYAPEAFRGHARDLLKLLE 256


>gi|126460252|ref|YP_001056530.1| PP-loop domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126249973|gb|ABO09064.1| PP-loop domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 327

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 31/222 (13%)

Query: 4   SPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
             +E++R     L+ P   + VAVSGG DS+ LL  L  +    +   ++  A +++   
Sbjct: 36  KVVETIRK--EWLIVPGDYVAVAVSGGKDSLVLLYILGKLRERGALRGVRLEAFTINEGH 93

Query: 62  -----LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA----------- 105
                 R + +D   YV ++  +  + ++V  +K+    T +  + R A           
Sbjct: 94  PYSCFYRMSRRD---YVRELAEKFGVEYNVYHFKDIFGVTAMELSERLAKAGHEVHMCTI 150

Query: 106 ----RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
               R   ++   K    T I TAH  DD+ +TV +        +     G+ +      
Sbjct: 151 DGVLRRRAMNIIGKRRGWTKIATAHNLDDEAQTVMLNVLMGNLGRFAWF-GLYEDAEEKD 209

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN---TDDRFE 200
            +   +P    R E+I  +     I   E        + R++
Sbjct: 210 LVPRIKPLKYIREEEIALYAYYHGIPLMELECPYVVANPRYD 251


>gi|73670143|ref|YP_306158.1| hypothetical protein Mbar_A2672 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397305|gb|AAZ71578.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 302

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 93/236 (39%), Gaps = 26/236 (11%)

Query: 2   FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+  +E  ++  +R   S+     I VA+SGG DS   L  +H +L +R    I+  AIS
Sbjct: 28  FVEDVERKIKLTIRKEYSIRKNDMIAVALSGGKDSSVALYIVHKILGNR--PDIEIVAIS 85

Query: 58  VDHCL---RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--RE-------- 104
           VD  +   R  + +       +   L + H + S+K     T    AA  RE        
Sbjct: 86  VDEGINGYRPHSLEVA---KSLTKMLGVRHIIKSFKEVHGVTMDELAAMDREKGACSYCG 142

Query: 105 -ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             R  +++  A  I AT ++T H  DD+ +T+ +   R   E+   +  +      +  +
Sbjct: 143 VLRKNILNRTALEIGATKLVTGHNLDDEAQTILLNHLRGDVER---MVRLAPPAAIEGLV 199

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
             ++P      +++  + L  ++              R  +R  + + +      K
Sbjct: 200 LRAKPLRNIPEKEVALYALVNSLPVDFSECPYAGEALRGEIRELLNNFEAKHPGTK 255


>gi|171688800|ref|XP_001909340.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944362|emb|CAP70472.1| unnamed protein product [Podospora anserina S mat+]
          Length = 773

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 90/229 (39%), Gaps = 32/229 (13%)

Query: 2   FLSPIESV---RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------K 52
           FL  + +    RF          I +A+SGG DSM L      + +   + K+       
Sbjct: 20  FLDALHATCNPRFPYDRGRSHKPIALAISGGVDSMALAYLSTKIRTTDHWFKVADHPVSN 79

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQT--GLMAAAR 103
             A  V+H LR+   +EV  V      L+I   V       V  K   P T   +   AR
Sbjct: 80  PVAFVVNHDLRKGMVEEVDQVIKALRGLKIFAYVAKIDWAQVLGKGVDPNTVPNIETLAR 139

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDL 161
           + RY  +   A+      ++TAH  DDQ ET+ MR    +  +G+        I   YD+
Sbjct: 140 QQRYRKLGTFARNCKTMSLLTAHHEDDQYETILMRLLSGHGYRGLRGMRPATDIPECYDM 199

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
           +      F+  +R         ++  W   P    +R ER ++ R +RD
Sbjct: 200 HGIYQSGFIDDQRS--------KHPVWNIYP----NRAERTKILRALRD 236



 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 6/140 (4%)

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYL 218
           D  + + RP L   ++ + +  L+ N+ W ED +N D     R  VR+  ++  L     
Sbjct: 289 DGGVMVYRPLLHFSKDRLIATCLENNVPWFEDHTNKDPTLTMRNAVRQMWKNHRLPEALQ 348

Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD----ILNIDSTLLFYLLRVSAAI 274
           K    +                   +    +          ++ +    L  +  +S+  
Sbjct: 349 KPAILRLAERCRKRVAFEEAEADRLLQSALVPHFEPSTGTLVVQLPKFRLPRVSGLSSKS 408

Query: 275 CGG-QISLPGYRSMERVMLF 293
            GG Q  L  +R +  ++L 
Sbjct: 409 PGGRQKRLDHHRYIAALLLR 428


>gi|218884033|ref|YP_002428415.1| ATPase, PP-loop superfamily [Desulfurococcus kamchatkensis 1221n]
 gi|218765649|gb|ACL11048.1| ATPase, PP-loop superfamily [Desulfurococcus kamchatkensis 1221n]
          Length = 321

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 19/244 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E++R + R +     +++AVSGG DSM LL  L  V   R  G  +   + ++  + 
Sbjct: 34  RVVETIRKY-RMIKPGDSVVIAVSGGKDSMSLLTVL--VKQARELGIREVIGLHLNLGIG 90

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-----------YALISE 112
             ++     V + C RL +   V+  ++      +   A +AR             + + 
Sbjct: 91  GFSELVESVVREYCERLGVKCHVIRLRDL-LGLSISELASKARRPPCSVCGLVKRYIFTV 149

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
              T+NA++++T H  DD ++                L+ +    + +     +RP +  
Sbjct: 150 STMTVNASVLVTGHHLDDVVKYALKNIYVG---DYRSLASLKPVSVEEGLPVKARPLISV 206

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVR-VRRFVRDIDLHALYLKMKKFQDLRVKVN 231
              DI ++     I + E         +  + VR F+ +++      K+     +   ++
Sbjct: 207 GERDIETYAKLSGIPYVEAKCPFKHEGDAEKAVRVFISELEESNPGAKLTLLSSISKLIH 266

Query: 232 NAVA 235
             + 
Sbjct: 267 EYIE 270


>gi|294102346|ref|YP_003554204.1| PP-loop domain protein [Aminobacterium colombiense DSM 12261]
 gi|293617326|gb|ADE57480.1| PP-loop domain protein [Aminobacterium colombiense DSM 12261]
          Length = 259

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/219 (21%), Positives = 75/219 (34%), Gaps = 23/219 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HCLRETAKDEVRYV 73
              ILV +SGG DS+  L+A  +    +S  + +  A +VD        R         +
Sbjct: 34  GDRILVGLSGGKDSLF-LLAALAAFRKKSPRRFELGACTVDITGGEMATRP--------L 84

Query: 74  SDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           S+ C  L + H V           + +    +     R  +IS  A      ++   H  
Sbjct: 85  SEFCRSLNLEHYVTIYPISKIIKKREEKSPCSFCANIRRGIISSEAVERGYNVLALGHNL 144

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD  ETV M       + G   S           LW+ RP +    +DI     + ++  
Sbjct: 145 DDVAETVLMNLF----QTGRFKSFKPKFWQSRTGLWVIRPLIYIGEKDIMKEAQRLHLPV 200

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            ED        +R R R  + ++      +K      L 
Sbjct: 201 TEDKCPFSLHTQRSRTRMLIENLARENPSIKKNIIHALS 239


>gi|11465460|ref|NP_045149.1| hypothetical protein CycaCp132 [Cyanidium caldarium]
 gi|61216752|sp|Q9TLW9|TILS_CYACA RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|6466363|gb|AAF12945.1|AF022186_68 unknown [Cyanidium caldarium]
          Length = 314

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 9/208 (4%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
               ++ +SGG DS+ LL  L        FG +K   +  DH  R  +    + +  +  
Sbjct: 23  KRKFVLGLSGGQDSLALLKLLCDYRKTY-FGLLKL--VYCDHRWRLESIANAQRLYYLSE 79

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              I+     +  +         +R  RY  + + + +   + ++TAHT  D  ET   R
Sbjct: 80  YSNISFY---YFATSTFLSSETQSRTWRYKNLLKISLSFEYSYLLTAHTLSDISETTIYR 136

Query: 139 SQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             R+   +   ++ +  T LY    L ISRP     R D         +    D +N   
Sbjct: 137 LVRN--LRISEINNLLFTFLYIKKTLSISRPLASVTRNDTYWLCSLSYLPLWSDYTNYWL 194

Query: 198 RFERVRVRRFVRDIDLHALYLKMKKFQD 225
              R R+R+ +     +     ++++ D
Sbjct: 195 FLSRNRIRQELFPYLKNYFNCSLERYLD 222


>gi|152990952|ref|YP_001356674.1| hypothetical protein NIS_1208 [Nitratiruptor sp. SB155-2]
 gi|151422813|dbj|BAF70317.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 253

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 17/206 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +  I         L     +LV +SGG DS+ L+ AL  +     +    F A+++ + 
Sbjct: 10  LIKQIARTNVEFELLKEGDRVLVGLSGGKDSLTLVHALKHIQRVAPY-DFTFKAVTISYG 68

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHA 114
           + E       +++  C    I H+V       ++ +  +  +   +     R   +  +A
Sbjct: 69  MGENYD----FLTKHCEEYGIEHTVYETEIFDLAKEKIRTNSSYCSFFSRMRRGALYTYA 124

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +   H  DD +E+ +M    + A +      M         L++ RP +  R 
Sbjct: 125 LQNGFNKLALGHHLDDAIESFFMNMFYNGAMRS-----MPPIYKSSKGLYVIRPLIETRE 179

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFE 200
           + +R F+ +       D      RF+
Sbjct: 180 KQLRGFVERNGFMAIGDEMCPAMRFD 205


>gi|41406536|ref|NP_959372.1| hypothetical protein MAP0438 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|61216573|sp|Q744A3|TILS_MYCPA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|41394885|gb|AAS02755.1| MesJ [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 320

 Score =  109 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 89/260 (34%), Gaps = 23/260 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
              VA+SGG DS+ L      +           +A+ VDH L+  +    +        L
Sbjct: 27  RWCVALSGGPDSLALTAVAARLRPT--------TAVIVDHGLQPDSAAVAQTARAQAIAL 78

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
               + V   +   + GL AAAR A                ++  HT DDQ ETV +   
Sbjct: 79  GCVAAQVISVHVDGEGGLEAAARRA----RYAALAAHRDGPVLLGHTLDDQAETVLLGLG 134

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
           R    + +             +    RP L  RR    +   +  ++  +DP N+D RF 
Sbjct: 135 RGSGVRSIAGM-------RPHDPPWCRPLLGQRRAVTHAACAELGLTAWQDPHNSDRRFA 187

Query: 201 RVRVRRFVRDIDLHALY----LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           R R+R  V  +    L       + +      + N  +  L  + L             +
Sbjct: 188 RARLRAEVLPLLEEVLGGGVVEALARTATALREDNELLDALAERALPAARAGAGLQVAAL 247

Query: 257 LNIDSTLLFYLLRVSAAICG 276
             +D+ +   ++R      G
Sbjct: 248 AGLDAPVRRRVIRAWLLAGG 267


>gi|213408567|ref|XP_002175054.1| ATP-binding domain-containing protein [Schizosaccharomyces
           japonicus yFS275]
 gi|212003101|gb|EEB08761.1| ATP-binding domain-containing protein [Schizosaccharomyces
           japonicus yFS275]
          Length = 347

 Score =  109 bits (274), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 20/206 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +  SGG DS  L   +  +L++R    +K   ISVD  +R    D +  V     +  
Sbjct: 60  IGIGASGGKDSTVLAYVMK-LLNERYDYGLKLHLISVDEGIRGYRDDSLATVKRNQQQYE 118

Query: 82  IAHSVVSWKN------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +  ++VS++                           R   +   A ++    I+T H  D
Sbjct: 119 LPMTIVSYEELYDGWTMDRIVSKIGAKNNCTYCGVFRRQALDRAALSLGIKHILTGHNAD 178

Query: 130 DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           D  ETV M   R       +   ++ M +T     +    +PF     ++I  +   + +
Sbjct: 179 DIAETVLMNLLRGDIARLPRSTEITTMSETSPTKRS----KPFKYTYEKEIVLYAHYKKL 234

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R  ++ ++
Sbjct: 235 DYFSTECTYSPEAFRGTARALIKQLE 260


>gi|329955512|ref|ZP_08296420.1| PP-loop family protein [Bacteroides clarus YIT 12056]
 gi|328525915|gb|EGF52939.1| PP-loop family protein [Bacteroides clarus YIT 12056]
          Length = 250

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 74/225 (32%), Gaps = 26/225 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     K    A+ V   +  +   +     Y+ +
Sbjct: 31  GDRILIGLSGGKDSLALVELLAR-RARVFKPKFSVVAVHVVMKN--IPYQSD--AEYLRN 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +   +   +   ++  +          R   +   AK      I   H  DD L
Sbjct: 86  FAESWGVPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTIAKEQGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED------IRSFLLQRNI 186
           ET+ M        +G   S     ++   ++ I RP       D      IR +  Q   
Sbjct: 146 ETLLMNIT----YQGAFSSMPPRLVMKKFDMTIIRPMCLVHEADLIELARIRDYRKQMKN 201

Query: 187 SWCEDPSNTDDRFERVR-VRRFVRDIDLHALYLKMKKFQDLRVKV 230
              E  S+        + +   + +++  A Y       +++ ++
Sbjct: 202 CPYESQSSRSTM----KGILHQLEEMNPEARYSLWGSMSNVQDEL 242


>gi|218779090|ref|YP_002430408.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218760474|gb|ACL02940.1| PP-loop domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 252

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     + V +SGG DS  L+  L   LS R   K     I +D    +++ DE   ++ 
Sbjct: 34  IQEGDRVAVGISGGKDSFTLMWILRERLS-RIPVKYHLEGIHIDPGFDDSSADE---IAQ 89

Query: 76  VCSRLRIAHSV------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            C  +     V      +   + + +          R   + E A+ +  T I   H  D
Sbjct: 90  YCESMNYRLRVEKTDFGIRAHSDENRENPCFLCSRLRRQRLFELAQEMGCTKIALGHHKD 149

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET++M         G   +       +   + + RP      ++I  F    N+   
Sbjct: 150 DLIETLFMNMC----YTGEIATMKPYQEFFGGEITVIRPLAYTDEKNIAYFARAMNMPEI 205

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
           E+   T    +R  +++ +  +      ++   F+ +     + +
Sbjct: 206 ENACPTSGASKREEIKQLLEGLYKQNPKIRGNLFRSMSRVKTDYL 250


>gi|88603458|ref|YP_503636.1| hypothetical protein Mhun_2212 [Methanospirillum hungatei JF-1]
 gi|88188920|gb|ABD41917.1| Protein of unknown function UPF0021 [Methanospirillum hungatei
           JF-1]
          Length = 309

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 90/253 (35%), Gaps = 25/253 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
             VR ++ +   P  + VA SGG DS  LL  L  +   RS       A++VD  +    
Sbjct: 37  NEVRRYLITKRLPKTLGVAFSGGKDSTALLKVLSEI---RSEFPSSIIALTVDEGIEGYR 93

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKT 116
           +D +R  ++ C  LRI H ++ +++          S  +          R   +   A+ 
Sbjct: 94  QDTIRAATETCLTLRIPHEIIRFQDLYGHSLDHLVSGSERNACTICGILRRRALEVLAQK 153

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              T+I T H  DD  +T  M +      K    +G   +  Y       +PF R   ++
Sbjct: 154 HKITMIATGHNQDDHAQTTVMNAISGDVRKI--FTGYEPSSWYAQR---IKPFARVSEKE 208

Query: 177 IRSFLLQRNISWCED--PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ---DLRVKVN 231
           +  + L   +   +D           R  VR  +   +           +   ++R ++ 
Sbjct: 209 VTLYALLSGL--FKDLSECPYAVSSLRGEVRTLLYQYEQKHPGAMRNAARCEEEIRERLG 266

Query: 232 NAVAMLIPKYLTV 244
                   K  ++
Sbjct: 267 EIYQQEAYKTCSI 279


>gi|324517150|gb|ADY46738.1| Cytoplasmic tRNA 2-thiolation protein 1 [Ascaris suum]
          Length = 348

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 23/257 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L+++     +G ++   +S+D  ++    D ++ V    
Sbjct: 47  RGEKVAIGASGGKDSTVLAYLLNTLNKRYDYG-VELLLLSIDEGIQGYRDDSLKAVERNR 105

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +  + +S+K+                         R   +   A  + A  ++T H
Sbjct: 106 LQYGLPLTTLSYKDLYGWTMDEIVAKIGTKNNCTFCGVFRRQALDRGALMLGANKLVTGH 165

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +       C TI+   +  + R  P      +DI  +   +
Sbjct: 166 NADDMAETVLMNLLRGDIAR----LQRCATIVTGSDDCLPRAKPLKYTLEKDIVMYAHFK 221

Query: 185 NISW----CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            + +    C    N    + R  V + +  I   A+   ++  +DL ++   A+  L   
Sbjct: 222 KLDYFSTECIYAPNAYRGYARNFV-KELERIRPRAILDLIRSGEDLAIRGEIALPTLTKC 280

Query: 241 YLTVHMRSIIAISQDIL 257
               ++ S +     +L
Sbjct: 281 ERCGYISSQMLCKACLL 297


>gi|302784632|ref|XP_002974088.1| hypothetical protein SELMODRAFT_100488 [Selaginella moellendorffii]
 gi|300158420|gb|EFJ25043.1| hypothetical protein SELMODRAFT_100488 [Selaginella moellendorffii]
          Length = 349

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 16/207 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +A SGG DS  L   L  + + R    +    +S+D  +     D +  V    
Sbjct: 49  KGERVAIAASGGKDSTVLAHILSEL-NTRHDYGLDLFLLSIDEGISGYRDDSLETVKRNE 107

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  I   V+S+K               +          R   +   A  + A  + T H
Sbjct: 108 VQYGIPLKVLSYKELYGWTMDEIVKEIGRKNNCTFCGVFRRQALDRGAALMKADKMATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRN 185
             DD  ET+ +   R    +   LS     +  +   L   +PF     ++I  +   + 
Sbjct: 168 NADDMAETILLNLLRGDIAR---LSRCTAIMTGEEGALPRCKPFKYTYEKEIVMYAYFKK 224

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212
           + +            R   R F++D++
Sbjct: 225 LDYFSTECIYSPNAYRGYARDFIKDLE 251


>gi|320592099|gb|EFX04538.1| pp-loop ATPase superfamily [Grosmannia clavigera kw1407]
          Length = 377

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 17/213 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            R       + +  SGG DS  L   L ++ ++R    +    +SVD  ++    D +  
Sbjct: 15  ARLFYPGEKVAIGASGGKDSTVLASVLKTL-NERHKYGLDLVLLSVDEGIKGYRDDSLET 73

Query: 73  VSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           V     +  +   +V               +  + G        R   +   AK +    
Sbjct: 74  VKRNAEQYEMPLKIVGYGELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKLLGIRH 133

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRS 179
           ++T H  DD  ETV M   R    +   LS     +    +  + R  P      ++I  
Sbjct: 134 VVTGHNADDVAETVLMNLLRGDLPR---LSRSTSIVTGGDHSEVKRSKPLKYAYEKEIVL 190

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   + + +            R   R  +++++
Sbjct: 191 YAHHKKLDYFSTECIYSPEAFRGSARSLIKNLE 223


>gi|260655018|ref|ZP_05860506.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1]
 gi|260630333|gb|EEX48527.1| Sua5/YciO/YrdC family protein [Jonquetella anthropi E3_33 E1]
          Length = 281

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 24/247 (9%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L++P   I V +SGG DS  LL AL   +   S  K    A++VD         + R +
Sbjct: 30  DLIHPGDRIAVGLSGGKDSSLLLYALA-CMKRWSPVKFTLQALTVDM---TDGNWDTRPM 85

Query: 74  SDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           + +C  L + + VV++        + +    +     R  ++   A+ +    +   H  
Sbjct: 86  AALCDMLDVPYQVVTFPVVSAIEGRNERSPCSFCANIRRGILDGTARQLGCNSVALGHHL 145

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS- 187
           DD +ETV M   R     G   + +         +W+ RP +      +R    +  ++ 
Sbjct: 146 DDTVETVLMNLFRG----GRFRAYLPRLYQDRSQVWVIRPLVYLTERQVRLENERLGLTR 201

Query: 188 -WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
                        ER R +  VR ++        + F  L+  V +A+  L    L  H+
Sbjct: 202 FHLSYTCPFSSDTERARTKELVRKLE--------ETFPSLKSNVQHALETLTEDDLWRHV 253

Query: 247 RSIIAIS 253
             +    
Sbjct: 254 CQLRRDD 260


>gi|154312244|ref|XP_001555450.1| hypothetical protein BC1G_06155 [Botryotinia fuckeliana B05.10]
 gi|150850118|gb|EDN25311.1| hypothetical protein BC1G_06155 [Botryotinia fuckeliana B05.10]
          Length = 430

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL  P   I +  SGG DS  L   L ++ ++R    ++   +S+D  ++    D +  V
Sbjct: 46  SLFSPGDKIAIGASGGKDSTVLASVLKTL-NERYNYGLELVLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +A  +V               +  + G        R   +   AK +    +
Sbjct: 105 KRNAVQYDMALKIVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKMLGINHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ET+ M   R    +   L+     +  D +  + R  P      ++I  +
Sbjct: 165 VTGHNADDVAETILMNLLRGDLPR---LARSTSIVTGDESSEVRRSKPLKYAYEKEIVLY 221

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R  +++++
Sbjct: 222 AHHKKLDYFTTECLYSPEAFRGSARSLIKNLE 253


>gi|310831050|ref|YP_003969693.1| putative 3'-5' exonuclease/tRNA(Ile) lysidine synthetase [Cafeteria
           roenbergensis virus BV-PW1]
 gi|309386234|gb|ADO67094.1| putative 3'-5' exonuclease/tRNA(Ile) lysidine synthetase [Cafeteria
           roenbergensis virus BV-PW1]
          Length = 385

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 95/246 (38%), Gaps = 24/246 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V++SGG DSM LL  L +++        +    S+++  R+ + DE+ ++    S  RI
Sbjct: 77  IVSLSGGVDSMVLLALLLNIIPAN-----RIITASINYNQRDESHDEMEFLHKYVSLYRI 131

Query: 83  AHSVVSWKNSKPQTG------LMAAAREARYALISEHAKTINAT----LIMTAHTFDDQL 132
                +    + +TG          +++ RY L ++            +I+  H  +D +
Sbjct: 132 KKYSTTINIGRRRTGDIKRKFYEETSQQIRYDLYNKIINENRLDPQNTIILLGHHKNDLI 191

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E ++         K   L  M + +     L   RP L  ++  I +   + NI + +D 
Sbjct: 192 ENIFNNFM--SGRKLTDLEVMKE-LSSKHGLIYGRPLLDFQKSAIYNLAYKHNIPFFKDT 248

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           +    +  R  +R  +  +        M   ++     N    M+   ++       I I
Sbjct: 249 TPKWSK--RGLMRNKLFPLLFEIYPNFMNSLKNQGENSNELNKMVQDTWIN----DFIFI 302

Query: 253 SQDILN 258
           +++I  
Sbjct: 303 TEEIPE 308


>gi|332669076|ref|YP_004452084.1| tRNA(Ile)-lysidine synthetase [Cellulomonas fimi ATCC 484]
 gi|332338114|gb|AEE44697.1| tRNA(Ile)-lysidine synthetase [Cellulomonas fimi ATCC 484]
          Length = 397

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 83/228 (36%), Gaps = 23/228 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK--------IKFSAISV 58
            +V   V  L   A +LVA SGG+          +  +    G+        ++  A+ V
Sbjct: 13  AAVTRSVDGLPDGALVLVACSGGA-----DSLALAAATAFVAGRSVRRAGRMLRAGAVVV 67

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           DH L+  + +     +  C  L +   VV+  +     G  AAAR ARYA +   A  + 
Sbjct: 68  DHGLQAGSAEVAERAAATCRDLGLDPVVVARADVGGTGGPEAAARTARYAALDRAATRLG 127

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  ++  HT DDQ ETV +   R      +        IL    L + R        D  
Sbjct: 128 AAAVLLGHTRDDQAETVLLGLARGSGALSLAGMPAVRGILRRPLLGLRR-------SDTL 180

Query: 179 SFLLQRNISWCEDPSN---TDDRFERVRVRRFVRDIDLHALYLKMKKF 223
                  +    DP+N    DD   R RVR  V  +    L   +   
Sbjct: 181 GACAALGLDPWHDPTNDGTDDDAPLRSRVRGRVLPVLERELGPGVADA 228


>gi|282858096|ref|ZP_06267291.1| PP-loop domain protein [Pyramidobacter piscolens W5455]
 gi|282584018|gb|EFB89391.1| PP-loop domain protein [Pyramidobacter piscolens W5455]
          Length = 275

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 81/223 (36%), Gaps = 21/223 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I V VSGG DS+ LL  L  +    S  K    A SVD         +   + ++C
Sbjct: 35  PGDRIAVGVSGGKDSLLLLHILKFI-KTYSPVKYDLQAFSVDM---TNGAWDPAPLQNLC 90

Query: 78  SRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             L +   V+ +      + K +    +     R  +++  A+      +   H  DD +
Sbjct: 91  DALEVPLHVIPYAIEHILDVKREESPCSLCANLRRGILNAAAQKAGCNKLALGHNLDDVV 150

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET  M   R+    G   S           +W+ RP +      IR+ L +  ++  +  
Sbjct: 151 ETGLMNLLRN----GRFRSFQPKLWHDRAKMWLIRPMIYLSEFQIRNELNRLGVATFQHC 206

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
                  ER R +  + ++          +F DL+  + +A+ 
Sbjct: 207 CKYGADTERSRTKSLIAELK--------PRFPDLKQSILHALE 241


>gi|221481085|gb|EEE19493.1| cancer-associated gene protein, putative [Toxoplasma gondii GT1]
          Length = 575

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 77/241 (31%), Gaps = 18/241 (7%)

Query: 7   ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V  F+R          + V VSGG DS  LL  LH++ + R    +    ++VD  ++
Sbjct: 98  DDVSAFIRRFSLFQRGQKVAVCVSGGKDSAVLLHVLHTL-NARENLGLSLHLLAVDEGIK 156

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSW--------------KNSKPQTGLMAAAREARYAL 109
                 +  V        +   VVS+              +    + G        R   
Sbjct: 157 GYRDHALAAVRRNSEVYNLPLHVVSYASLYHGWTMDRIAQQALLGKDGDCTFCGIFRRQA 216

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               A+ I A ++ T H  DD  ET  M   R   ++               ++   +P 
Sbjct: 217 FERGAQDIGADVLCTGHNADDGAETFLMNILRGDMQRLPVSGAPLTGSREGPSVMRVKPL 276

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           L   + ++  +     + +            R  VR F+  +  +    ++        K
Sbjct: 277 LASYQREVVLYAHFNRLDYFATECTYSGAAYRGLVRNFLSSLQDNQHQQRVLDLLHAARK 336

Query: 230 V 230
           +
Sbjct: 337 L 337


>gi|187777244|ref|ZP_02993717.1| hypothetical protein CLOSPO_00796 [Clostridium sporogenes ATCC
           15579]
 gi|187774172|gb|EDU37974.1| hypothetical protein CLOSPO_00796 [Clostridium sporogenes ATCC
           15579]
          Length = 240

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 79/214 (36%), Gaps = 15/214 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L    S  S  K    AI++D         +   +  
Sbjct: 18  IQNGDKIAVGLSGGKDSIALLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLES 72

Query: 76  VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           VCS + +   +          + + +    +     R   ++ ++K +    I   H  +
Sbjct: 73  VCSNINVPLYIYKTPIKEIVFDVRKEKNPCSLCANLRRGALNNYSKKLGCNKIALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G        T L   ++ I RP +      I+S + + N+   
Sbjct: 133 DAIETLLMSML----YEGRVSCFSPRTYLNKADITIIRPMIYIDELAIKSMVKRYNLPII 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           ++P   +   +R  ++     ++     +K +  
Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222


>gi|222823247|ref|YP_002574820.1| ATPase (PP-loop superfamily) [Campylobacter lari RM2100]
 gi|222538468|gb|ACM63569.1| conserved hypothetical protein, putative ATPase (PP-loop
           superfamily) [Campylobacter lari RM2100]
          Length = 253

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 79/245 (32%), Gaps = 31/245 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG DS+ L   L  + +   F K +  A++    L     ++   + + C  
Sbjct: 26  DKVLLGLSGGKDSLALAHLLKRMQAHAPF-KFQLKAVT----LSYGMGEDYTKLHNHCKE 80

Query: 80  LRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             I H V+       S    +  +   +     R   +  +A       +  AH  DD +
Sbjct: 81  HGINHEVIDSNIYEISGDTIRKNSSFCSYFSRMRRGALYTYALENGFNKLAIAHHLDDAV 140

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E+ +M    + +     L  +         + + RP +  R   +R   +   +    + 
Sbjct: 141 ESFFMNFIYNGS-----LRSLAPKYKSKRGVEVIRPLIFVRERQLRENAINNELEVIGNE 195

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
                         F   + L    +K    ++   ++   +    PK  T    +   I
Sbjct: 196 --------------FCPGMKLSEKNVKFPHAREEAKQLLANLEKENPKLFTSLKTAFENI 241

Query: 253 SQDIL 257
             D  
Sbjct: 242 HMDSF 246


>gi|170755404|ref|YP_001779793.1| hypothetical protein CLD_0620 [Clostridium botulinum B1 str. Okra]
 gi|169120616|gb|ACA44452.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 240

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L    S  S  K    AI++D         +   + +
Sbjct: 18  IQNGDKIAVGLSGGKDSVVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72

Query: 76  VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           VCS + +   +          + + +    +     R   ++ ++K +    I   H  +
Sbjct: 73  VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G        T L   N+ I RP +      I+S + + ++   
Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           ++P   +   +R  ++     ++     +K +  
Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222


>gi|153940664|ref|YP_001389528.1| hypothetical protein CLI_0220 [Clostridium botulinum F str.
           Langeland]
 gi|152936560|gb|ABS42058.1| conserved hypothetical protein [Clostridium botulinum F str.
           Langeland]
 gi|295317628|gb|ADF98005.1| conserved hypothetical protein [Clostridium botulinum F str.
           230613]
          Length = 240

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L    S  S  K    AI++D         +   + +
Sbjct: 18  IQNGDKIAVGLSGGKDSVVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72

Query: 76  VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           VCS + +   +          + + +    +     R   ++ ++K +    I   H  +
Sbjct: 73  VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G        T L   N+ I RP +      I+S + + ++   
Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           ++P   +   +R  ++     ++     +K +  
Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222


>gi|116202123|ref|XP_001226873.1| hypothetical protein CHGG_08946 [Chaetomium globosum CBS 148.51]
 gi|88177464|gb|EAQ84932.1| hypothetical protein CHGG_08946 [Chaetomium globosum CBS 148.51]
          Length = 402

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V
Sbjct: 46  QLFQPGEKVAIGASGGKDSTVLASVLKTL-NERHEYGLDLVLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +  +VV               +  + G        R   +   AK +    +
Sbjct: 105 KRNAVQYDMPLTVVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKMLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ETV M   R    +   LS     +  D    + R  P      ++I  +
Sbjct: 165 VTGHNADDVAETVLMNLLRGDLAR---LSRSTSIVTGDDRSEVKRSKPLKYSYEKEIVLY 221

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R  ++ ++
Sbjct: 222 AHHKKLDYFSTECIYSPEAFRGSARSLIKQLE 253


>gi|255325834|ref|ZP_05366926.1| tRNA(Ile)-lysidine synthase [Corynebacterium tuberculostearicum
           SK141]
 gi|255297046|gb|EET76371.1| tRNA(Ile)-lysidine synthase [Corynebacterium tuberculostearicum
           SK141]
          Length = 295

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 17/200 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R+      + V +SGG+DS+ L+ AL +          +  A+ VDH L++ ++ +   
Sbjct: 1   MRAAGLDHAVAVGLSGGADSLALMAALVA-------EGHEVLALCVDHGLQDGSRAQAER 53

Query: 73  VSDVCSRLRIAHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            ++    L     V+S +         + AAAR ARY  ++          +  AHT DD
Sbjct: 54  AAEQARTLGARAQVLSVETGAVAGAESMEAAARAARYRALAAACADEGLE-VAVAHTADD 112

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           Q ET+ + + R        ++GM +    +    + RP L  RR D      +  +S   
Sbjct: 113 QAETLLLGALRGR------VTGMSERSEVE-GARVVRPLLGVRRADTEGACAELGLSAWR 165

Query: 191 DPSNTDDRFERVRVRRFVRD 210
           DP N D  F RV +RR V  
Sbjct: 166 DPQNEDTNFRRVALRREVIP 185


>gi|315639278|ref|ZP_07894440.1| PP-loop family protein [Campylobacter upsaliensis JV21]
 gi|315480604|gb|EFU71246.1| PP-loop family protein [Campylobacter upsaliensis JV21]
          Length = 249

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 17/195 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +  +       + +     +L+ +SGG DS+ L   L  + +   F K +  A +    
Sbjct: 8   LIRQVAQANAKFKLIEDNDRVLLGLSGGKDSLALAHLLKRMQAHAPF-KFELEAAT---- 62

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHA 114
           L     ++   +   C    I HSV+       S    +  +   +     R   +  +A
Sbjct: 63  LSYGMGEDYSKLHAHCEEHGIKHSVIESNIYEISGDTIRENSSFCSYFSRMRRGALYTYA 122

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +  AH  DD  E+ +M    + A     L  +         + I RP +  R 
Sbjct: 123 LEKGFNKLAIAHHLDDAAESFFMNFIHNGA-----LRTLAPIYKSKRGITIIRPLIFVRE 177

Query: 175 EDIRSFLLQRNISWC 189
             +R       +   
Sbjct: 178 RQLRDNATINELEVI 192


>gi|255940806|ref|XP_002561172.1| Pc16g08530 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585795|emb|CAP93523.1| Pc16g08530 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 341

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 16/211 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L +P   + +  SGG DS  L   L ++ ++R    +    +S+D  +R    D +  V
Sbjct: 46  NLFFPGERVAIGASGGKDSTVLAAVLKTL-NERYDYGLDLCLLSIDEGIRGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   ++                  + G        R   +   A  +    +
Sbjct: 105 KRNAVQYDMPLDILGYSELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGIRHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +T H  DD  ETV M   R    +   G S +  +   D  +  S+P      ++I  + 
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTGSDASD--IKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             R + +            R   R  ++D++
Sbjct: 223 HHRQLDYFTTECIYSPEAFRGSARTLIKDLE 253


>gi|261367670|ref|ZP_05980553.1| PP-loop family protein [Subdoligranulum variabile DSM 15176]
 gi|282570463|gb|EFB75998.1| PP-loop family protein [Subdoligranulum variabile DSM 15176]
          Length = 252

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 23/232 (9%)

Query: 9   VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           VR  V+    +     ++V VSGG DS+ L IAL  + +       +  A+++D C    
Sbjct: 11  VRKAVQDYEMIAPGDRVMVGVSGGKDSVVLTIALGRLRAYLGVP-FEVQAVTLDPCFGGV 69

Query: 64  --ETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAK 115
             + +     + ++      I + V          + + ++   A   + R   +   A+
Sbjct: 70  ETDYSPLSELFAAE-----NIPYEVRRTDIGPVVFDYRKESNPCALCAKLRRGTLHTAAQ 124

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    +   H  DD +ET YM   R    +G        T L   +L + RP L     
Sbjct: 125 QLGCNKVALGHHLDDAVETFYMNLWR----EGRIGCFSPVTYLSRRDLTMIRPLLLATES 180

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           ++ S + +  +   +     D    R   ++FVR+        + K    L+
Sbjct: 181 EVTSAVKRAGLPVIKSRCPADGVTTREETKQFVREFSRKDPAFRQKTLHALQ 232


>gi|168019804|ref|XP_001762434.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686512|gb|EDQ72901.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 348

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 71/207 (34%), Gaps = 16/207 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + VA SGG DS  L   L ++L+ R    +    +S+D  +     D +  V    
Sbjct: 49  RGDRVAVAASGGKDSTVLAHVL-TLLNKRHDYGLDLFLLSIDEGIAGYRDDSLETVKRNE 107

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           ++  I   VVS+K                          R   +   A  + A  + T H
Sbjct: 108 TQYGIPLEVVSYKTLYNWTMDEIVKEIGLKNNCTFCGVFRRQALDRGAAKMKAVKMATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRN 185
             DD  ET+ +   R    +   L+     I  +   L   +PF     ++I  +   + 
Sbjct: 168 NADDVAETILLNIVRGDIAR---LARCTSIITGEEGALPRCKPFKYTYEKEIVMYAYFKK 224

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212
           + +            R   R F++D++
Sbjct: 225 LDYFSTECTYSPNAYRGFAREFIKDLE 251


>gi|257459068|ref|ZP_05624187.1| PP-loop family protein [Campylobacter gracilis RM3268]
 gi|257443453|gb|EEV18577.1| PP-loop family protein [Campylobacter gracilis RM3268]
          Length = 249

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 84/260 (32%), Gaps = 40/260 (15%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       IL+A+SGG DSM L   L    S  S    +F A++V + +     +++R +
Sbjct: 20  KMFERGDKILLALSGGKDSMSLAHVLKHFQSV-SPLDWEFRAVTVTYGI----GEDLREI 74

Query: 74  SDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           S       I + ++  K         +  T   +     R   I  +A       I  AH
Sbjct: 75  SAHFKEHEIPYEIIDTKIFEFGKEKIRANTTFCSFCSRMRRGYIYSYALEHGFNKIAIAH 134

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  E+ +M    + A     L  +    + +  L I RPF+  R   I +      +
Sbjct: 135 HLDDAAESFFMNFTFNGA-----LRTLAPRYVAENGLVIIRPFILARERQIAACARDNKL 189

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
                                   I         +++         A   L+ +Y   H 
Sbjct: 190 P-----------------------IMREEEVCPARQYGGKEPTARAATKELLAQYEKTHP 226

Query: 247 RSIIAISQDILNIDSTLLFY 266
           R  I++     NI     F 
Sbjct: 227 RFFISLQAAFANIHEETFFE 246


>gi|154151660|ref|YP_001405278.1| PP-loop domain-containing protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000212|gb|ABS56635.1| PP-loop domain protein [Methanoregula boonei 6A8]
          Length = 315

 Score =  108 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 24/222 (10%)

Query: 3   LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           L    +       L++P   I V +SGG DS  LL+ L  +L      ++K  AI+VD  
Sbjct: 40  LEARAAATIREGDLIHPGDRIAVGLSGGKDSTALLVILSRLLP--GLPEVKIVAITVDEG 97

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----------KPQTGLMAAAREARYALIS 111
           +     D ++    +  RL + H +VS+++                        R   + 
Sbjct: 98  IAGYRSDTIKSAEALTRRLGVEHRMVSFRDLIGSDLDTLLLGRGKQACTICGILRKKALM 157

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A+   AT+I T H  DD+ ++V M + R    + +  +G   +  +   L   +P   
Sbjct: 158 DAARDSGATVIATGHNLDDEAQSVLMNALRGDLPRLVRDAGAGRSAPF---LPRIKPLAA 214

Query: 172 CRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDI 211
              ++I ++L  +++     E P      + R  +R  VR +
Sbjct: 215 IAEKEIAAYLFVQDLFPVLPECP------YTRYALRADVRSL 250


>gi|295674393|ref|XP_002797742.1| PP-loop ATPase superfamily protein [Paracoccidioides brasiliensis
           Pb01]
 gi|226280392|gb|EEH35958.1| PP-loop ATPase superfamily protein [Paracoccidioides brasiliensis
           Pb01]
          Length = 404

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 100/297 (33%), Gaps = 25/297 (8%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++L YP   + +  SGG DS  L   L ++ +DR    +  + +S+D  ++    D +  
Sbjct: 45  KALFYPGERVAIGASGGKDSTVLASVLKTL-NDRHNYGLHLTLLSIDEGIKGYRDDSLET 103

Query: 73  VSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           V     +  +   +V                  + G        R   +   A  +    
Sbjct: 104 VKRNAVQYSMPLEIVGYDELYGWTMDQVVAEVGKKGNCTYCGVFRRQALDRGAAKLGIKH 163

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++T H  DD  ETV M   R    +    + +  T     ++  S+P      ++I  + 
Sbjct: 164 VVTGHNADDVAETVMMNLLRGDLPRLSRATSIV-TESSASDIKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
             + + +            R   R  ++D++       +       V+    +A L+P  
Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLEKMRPSSILD-----IVRSGEDMARLVPPE 277

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGK 298
           ++   + I   S   L  D+         S   CG Q  L   R +  +   L   +
Sbjct: 278 ISSSGKHIPHTSVAALEGDAED------YSTGGCGSQNGLLNGRELADIEKDLSEDQ 328


>gi|290987162|ref|XP_002676292.1| hypothetical protein NAEGRDRAFT_36958 [Naegleria gruberi]
 gi|284089893|gb|EFC43548.1| hypothetical protein NAEGRDRAFT_36958 [Naegleria gruberi]
          Length = 368

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 19/214 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +A SGG DS  L   +  VL++R    +    +S+D  ++    D +  V
Sbjct: 45  NLFKPGDKVAIAASGGKDSTALAHIMK-VLNERYNYGLDLYLLSIDEGIKGYRDDSLETV 103

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                + ++   ++S+K                          R   +    + +    +
Sbjct: 104 KRNREQYQVPLKILSYKELYGWSMDEIVQQIGLKNNCTFCGVFRRQALDRGCEQLKVDKM 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRCRREDIRS 179
           +T H  DD  ETV M   R    +   L    D I +D   +      PF    +++I  
Sbjct: 164 VTGHNADDIAETVLMNILRGDIGR---LERCVDIITHDEGGFSIPRAKPFKYTYQKEIVL 220

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213
           +   + + +     +      R   R  ++D++ 
Sbjct: 221 YAYFKKLDYFSTECSYSPNAYRGHARELIKDLEQ 254


>gi|66804305|ref|XP_635931.1| hypothetical protein DDB_G0290035 [Dictyostelium discoideum AX4]
 gi|60464272|gb|EAL62423.1| hypothetical protein DDB_G0290035 [Dictyostelium discoideum AX4]
          Length = 1165

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 24/206 (11%)

Query: 19   PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77
               +LV VSGG DS+ L+  L  +   RS  K   +A +VD      + D +   + +  
Sbjct: 922  GDKVLVGVSGGKDSLTLIHTLLDLRR-RSKAKYTVAACTVD----PQSPDYDPSQLKNYF 976

Query: 78   SRLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            + L + +  VS             +  + +  + A     R  ++ +  +     ++   
Sbjct: 977  ASLGVPYFYVSQAIMESAKSCMLREGIENKASICAYCSRMRRGIMYDICRREGYNVLALG 1036

Query: 126  HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
               DD  E+  M         GM  +   + +    ++ I RP    R    R F     
Sbjct: 1037 QHLDDLSESFLM----SAFYNGMLSTMKVNYLNEQGDVRIIRPLANLRESQTRLFAKVMG 1092

Query: 186  ISWCEDPSNTDDRFERVRVRRFVRDI 211
            +       N    FE  ++R+ ++ +
Sbjct: 1093 LPVI--SENCPACFEAPKIRQSMKKL 1116


>gi|169771105|ref|XP_001820022.1| cytoplasmic tRNA 2-thiolation protein 1 [Aspergillus oryzae RIB40]
 gi|238486380|ref|XP_002374428.1| PP-loop ATPase superfamily protein, putative [Aspergillus flavus
           NRRL3357]
 gi|83767881|dbj|BAE58020.1| unnamed protein product [Aspergillus oryzae]
 gi|220699307|gb|EED55646.1| PP-loop ATPase superfamily protein, putative [Aspergillus flavus
           NRRL3357]
          Length = 417

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 16/211 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL YP   + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V
Sbjct: 46  SLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLCLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V                  + G        R   +   A  +    +
Sbjct: 105 KRNAEQYEMPLEIVGYDELYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAARLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +T H  DD  ETV M   R    +   G S + D+   D  +  S+P      ++I  + 
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTDSAASD--IKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             + + +            R   R  ++D++
Sbjct: 223 HHKQLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|238020968|ref|ZP_04601394.1| hypothetical protein GCWU000324_00865 [Kingella oralis ATCC 51147]
 gi|237867948|gb|EEP68954.1| hypothetical protein GCWU000324_00865 [Kingella oralis ATCC 51147]
          Length = 345

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 12/201 (5%)

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +  AH  DDQ+ET ++ + R    +   L+ M  +  +     + RP L   R +I 
Sbjct: 27  CDAVALAHHQDDQIETFFLAALRGGGIR--ALAAMPPSREW-QGKTLLRPLLAYSRAEIE 83

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML- 237
           ++    N++   D SN D    R  +R  +    +  L       Q     + +  A+L 
Sbjct: 84  AYATAHNLAHVNDSSNQDPGLLRNWLRHQMLPRLVFRLPHAAAHIQSTITTLQDEHALLN 143

Query: 238 ---IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM---ERVM 291
                 +  +H             +       +L   A +    +  P  RS+    RV+
Sbjct: 144 EIIAEDWQRIHTPRNQFSRPAWQQLSPLRRRQMLHRFAHV--HNLGTPSKRSLADFARVL 201

Query: 292 LFLKSGKRGCVSIGRVVIDRR 312
                     +  G+ ++ R+
Sbjct: 202 DQAAHSATWQLPHGKALLHRQ 222


>gi|157165487|ref|YP_001466356.1| PP-loop family protein [Campylobacter concisus 13826]
 gi|112800124|gb|EAT97468.1| PP-loop family protein [Campylobacter concisus 13826]
          Length = 252

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 69/186 (37%), Gaps = 17/186 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +     IL+ +SGG DS+ L   L  + +     K +F A++    L     ++  Y+
Sbjct: 20  KMIEGGDKILLGLSGGKDSLALAHVLKHIQNVTPE-KFEFKAVT----LSYGMGEDYAYL 74

Query: 74  SDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +  C+   I H V+       S +  +  +   +     R   +  +A       +  AH
Sbjct: 75  TKHCNEHGIEHEVIDSSIFEISKEKIRKNSSFCSFFSRMRRGYLYTYALNHGFNKLAIAH 134

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  E+ +M    + A     L  +         + + RPF+  R   +R   ++  +
Sbjct: 135 HLDDAAESFFMNFTYNGA-----LRTLAPKYKAKNGIIVIRPFIFVRERQLRENAIKNEL 189

Query: 187 SWCEDP 192
               D 
Sbjct: 190 RVVGDE 195


>gi|224538910|ref|ZP_03679449.1| hypothetical protein BACCELL_03806 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519488|gb|EEF88593.1| hypothetical protein BACCELL_03806 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 251

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 42/245 (17%)

Query: 10  RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DH 60
           + F + LV          IL+ +SGG DS+ L+  L    +     +    A+ V   + 
Sbjct: 16  KRFSKGLVEYGLIEDGDKILIGLSGGKDSLALVELLAK-RARVFKPRFSVVAVHVVMKN- 73

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTI 117
            +   +   + Y+ +      +   +   +   ++  +          R   +   AK  
Sbjct: 74  -IPYQSD--LAYLREYVESWNVPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTVAKEQ 130

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I   H  DD LET+ M        +G   S     ++   ++ I RP       D+
Sbjct: 131 GCNKIALGHHMDDILETLLMNIT----FQGAFSSMPPRLVMKKFDMTIIRPMCLVHESDL 186

Query: 178 RSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
                 R              S     SN  D      +   + +++  A Y       +
Sbjct: 187 LELAQIRGYRKQVKNCPYEAQSHR---SNMKD------ILHQLEEMNPEARYSLWGSMAN 237

Query: 226 LRVKV 230
           ++ ++
Sbjct: 238 VQEEL 242


>gi|169335606|ref|ZP_02862799.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258344|gb|EDS72310.1| hypothetical protein ANASTE_02026 [Anaerofustis stercorihominis DSM
           17244]
          Length = 234

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 14/220 (6%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           HI VAVSGG DSM LL AL + +   S  K K +AIS+D    +    E   V   CS L
Sbjct: 23  HICVAVSGGKDSMILLKALRTFMY-FSPVKFKLTAISIDVGF-DNMDFEKLRV--FCSDL 78

Query: 81  RIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            I   +V         + + +    +   + + A ++E A +I +  I   H  DD +E+
Sbjct: 79  DIPLKIVKTDIAKIVFDERKEKNPCSLCSKMKRAALNETALSIGSNKIAYGHHRDDFIES 138

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
             +        +G   +    T L    ++  RP L  + +DI   +   NI   +    
Sbjct: 139 FLLSLF----YEGRIHTFKPVTYLDRTGVYSIRPLLYAKEKDIIHAVKTENIPVIKSGCP 194

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            D   +R  ++  ++ +      +  + F  ++  +++  
Sbjct: 195 ADGFTKREEMKELMKYLKKQIPMVDERMFTAIKNNLDDIH 234


>gi|255321990|ref|ZP_05363140.1| PP-loop family protein [Campylobacter showae RM3277]
 gi|255301094|gb|EET80361.1| PP-loop family protein [Campylobacter showae RM3277]
          Length = 255

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     IL+ +SGG DS+ L   L  + +     K +F A++    L     ++  Y+
Sbjct: 20  RMVRGGDKILLGLSGGKDSLALAHVLKHMQNVTPE-KFEFKAVT----LSYGMGEDYAYL 74

Query: 74  SDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +  C+   I H V+       S    +  +   +     R   +  +A       +  AH
Sbjct: 75  TRHCAEHGIEHDVIDSSIFEISKDKIRKNSSFCSFFSRMRRGYLYTYALEHGFNKLAIAH 134

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD +E+ +M    + A     L  +    +    + + RPF+  R   +R   ++  +
Sbjct: 135 HLDDAVESFFMNFTYNGA-----LRTLAPKYVAANGIEVIRPFIFVRERQLRENAVRNGL 189

Query: 187 SWCEDP 192
           +   D 
Sbjct: 190 TVIGDE 195


>gi|154173805|ref|YP_001408798.1| PP-loop family protein [Campylobacter curvus 525.92]
 gi|112803748|gb|EAU01092.1| PP-loop family protein [Campylobacter curvus 525.92]
          Length = 256

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 89/271 (32%), Gaps = 34/271 (12%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LS +       + +     IL+ +SGG DS+ L   L  +       K +F A++    L
Sbjct: 9   LSTVGKTNAQYKMVQGGDKILLGLSGGKDSLALAHVLKHMQRVTPE-KFEFKAVT----L 63

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAK 115
                ++  Y++  C+   I H V+       S    +  +   +     R   +  +A 
Sbjct: 64  SYGMGEDYAYLTRHCNEHGIEHEVIDSSIFEISKDKIRKNSSFCSFFSRMRRGYLYTYAL 123

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +  AH  DD  E+ +M    + A     L  +         + + RPF+  R  
Sbjct: 124 NGGFNKLAIAHHLDDAAESFFMNFTYNGA-----LRTLAPKYKAKNGIEVIRPFIFVRER 178

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            +R   L+  +    D +    RF+                 +KM   +    ++   + 
Sbjct: 179 QLRENALRNELRVIGDEACPAMRFD-----------------VKMPHARYETKQLLAQLE 221

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFY 266
              PK  T    +   I  D     S   F 
Sbjct: 222 KNNPKLFTSLKAAFHNIHTDTFFGSSEAKFS 252


>gi|19112856|ref|NP_596064.1| cytosolic thiouridylase subunit Ctu1 [Schizosaccharomyces pombe
           972h-]
 gi|74582842|sp|O94282|CTU1_SCHPO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|3850068|emb|CAA21879.1| cytosolic thiouridylase subunit Ctu1 [Schizosaccharomyces pombe]
          Length = 335

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 87/257 (33%), Gaps = 25/257 (9%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           + FVR       + +  SGG DS  L   +  +L++R    ++   ISVD  +R    D 
Sbjct: 46  KLFVR----GERVGIGASGGKDSTVLAYVMK-LLNERYDYGLELYLISVDEGIRGYRDDS 100

Query: 70  VRYVSDVCSRLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTI 117
           +  V     +  +   +VS                             R   +   A ++
Sbjct: 101 LDTVKRNQQQYGLPMKIVSYADLYDGWTMDNVVARIGTKNNCTYCGVFRRQALDRAALSL 160

Query: 118 NATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +   ++T H  DD  ET+ M   R       +   ++   D+     +    +PF     
Sbjct: 161 DIHHLVTGHNADDIAETILMNLLRGDVARLPRSTEITTQSDSSPTKRS----KPFKYSYE 216

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI-DLHALYLKMKKFQDLRVKVNNA 233
           ++I  +   + + +            R   R  ++ + ++    +    +    +++ ++
Sbjct: 217 KEIVLYAHYKKLDYFSTECTYSPEAFRGTARAMIKQLENIRPSSILDIIYSGESMQLASS 276

Query: 234 VAMLIPKYLTVHMRSII 250
           V   +P+  T      I
Sbjct: 277 VQEQLPQQTTCERCGFI 293


>gi|223038750|ref|ZP_03609043.1| PP-loop family protein [Campylobacter rectus RM3267]
 gi|222880152|gb|EEF15240.1| PP-loop family protein [Campylobacter rectus RM3267]
          Length = 255

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 17/186 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     IL+ +SGG DS+ L   L  + +     K +F A++    L     ++  Y+
Sbjct: 20  RMVRGGDKILLGLSGGKDSLALAHVLKHMQNVTPE-KFEFKAVT----LSYGMGEDYAYL 74

Query: 74  SDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +  C+   I H V+       S    +  +   +     R   +  +A       +  AH
Sbjct: 75  TRHCAEHGIEHDVIDSSIFEISKDKIRKNSSFCSFFSRMRRGYLYTYALEHGFNKLAIAH 134

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD +E+ +M    + A     L  +    +    + + RPF+  R   +R   ++  +
Sbjct: 135 HLDDAVESFFMNFTYNGA-----LRTLAPKYVAANGIEVIRPFIFVRERQLRENAVRNGL 189

Query: 187 SWCEDP 192
           +   D 
Sbjct: 190 TVIGDE 195


>gi|288932186|ref|YP_003436246.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
 gi|288894434|gb|ADC65971.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
          Length = 302

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 79/205 (38%), Gaps = 15/205 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +     I +A+SGG DS+ L   L  +   R    ++F AI++D  +       V   
Sbjct: 42  KMIESGDKIALAMSGGKDSVTLAHTLIELYGKRR--DLEFFAITIDEGIEGYRPPTVEIA 99

Query: 74  SDVCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             VC  L I H VVS++            +            R  L++  A+ + AT + 
Sbjct: 100 KKVCRDLGIEHVVVSFREEIGLDLDEMVERGSRNACTYCGVFRKYLLNRTARELGATKLA 159

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+ +T+ +       E+   L+ +    +    ++  +P      +++  + + 
Sbjct: 160 TGHNLDDETQTILLNFLNADIER---LARLIPQRVQKGLVYRIKPLREIYEKEVVVYAII 216

Query: 184 RNISWCEDPSNTDDRFERVRVRRFV 208
            N+    +         R  VR F+
Sbjct: 217 NNLPVSLEECPYSRFPARALVRDFI 241


>gi|305432659|ref|ZP_07401820.1| PP-loop family protein [Campylobacter coli JV20]
 gi|304444370|gb|EFM37022.1| PP-loop family protein [Campylobacter coli JV20]
          Length = 253

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 61/178 (34%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  + +   F K +  A +    L     ++   +   C 
Sbjct: 25  GDRVLLGLSGGKDSLALAHLLKRMQAHAPF-KFELEAAT----LSYGMGEDYSGLHAHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVIDSNIYEVSGDTIRQNSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELSVI 192


>gi|71031446|ref|XP_765365.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352321|gb|EAN33082.1| hypothetical protein, conserved [Theileria parva]
          Length = 376

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 20/215 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + V VSGG DS  L   L  +             + VD  ++    D ++ V  + 
Sbjct: 48  SGDRVCVGVSGGKDSSVLAHVLSKIKETYGL-DWNLYLLGVDEGIKGYRDDSLKVVKSMH 106

Query: 78  SRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +I   ++S+K               + G        R  ++   A+   A ++ T H
Sbjct: 107 DKYKIELKILSFKERFGFSMDQVVKLIGKKGNCTVCGSFRRQMLEIGARIFEANVLCTGH 166

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--------NLWISRPFLRCRREDIR 178
             DD  ETV +   R    K    S        D          +   +P      ++I 
Sbjct: 167 NADDMAETVLLNLFRGDLLKLTSNSNSPSDTTVDNTSESVNKVRIRRVKPLKYSFEKEIV 226

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213
            +    ++ +            R  +R F+++++L
Sbjct: 227 LYARYLSLDYFSTECIYSPEAYRGHMRSFIKNLEL 261


>gi|310800566|gb|EFQ35459.1| PP-loop family protein [Glomerella graminicola M1.001]
          Length = 396

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 14/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +  SGG DS  L   L  + ++R    +    +S+D  ++    D +  V
Sbjct: 46  ALFSPGEKVAIGASGGKDSTVLASVLKDL-NERYHYGLDLVLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               ++  +  +V+               +  + G        R   +   AK +    +
Sbjct: 105 KRNATQYEMPLTVIGYDELYGWTMDQVVQTIGKKGNCTYCGVFRRQALDRGAKMLGIKHL 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ET+ M   R    + +G S    T     ++  S+P      ++I  +  
Sbjct: 165 VTGHNADDVAETILMNLLRGDLPR-LGRSTSIVTGDDTCDVKRSKPLKYSYEKEIVLYAH 223

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R  +++++
Sbjct: 224 HKKLDYFSTECIYSPEAFRGTARTLIKNLE 253


>gi|258515579|ref|YP_003191801.1| PP-loop domain-containing protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779284|gb|ACV63178.1| PP-loop domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 247

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 87/222 (39%), Gaps = 21/222 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           FLS I+       SL+    I+ V +SGG DS+ LL +L  ++      + KF AI +D 
Sbjct: 8   FLSEIKKA-IIRHSLIVDGDIIGVGISGGKDSIALLYSLCDIIRSAPV-RFKFIAILIDL 65

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHA 114
                   ++  + D C +  I   +     +K       +    +   + R   +   A
Sbjct: 66  GW----LSDLSPIVDFCQQKNIQLHIEPSDIAKIVFEIREEKQPCSLCAKMRRGALHNTA 121

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    +   H  DD +ET ++         G   + +    L   ++ + RP +    
Sbjct: 122 KMLGCNKVALGHHLDDVIETFFLNLI----YTGQMKTFLPAIYLDRSDITLIRPMIYVTE 177

Query: 175 EDIRSFLLQRNISWCEDPSN--TDDRFERVRVRRFVRDIDLH 214
           +D+ + + + N+      SN   D + +R  ++  V  +  H
Sbjct: 178 DDVVNLVGRENLPVV--SSNCPVDGKTKREEIKSTVALLASH 217


>gi|302770933|ref|XP_002968885.1| hypothetical protein SELMODRAFT_410069 [Selaginella moellendorffii]
 gi|300163390|gb|EFJ30001.1| hypothetical protein SELMODRAFT_410069 [Selaginella moellendorffii]
          Length = 349

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 16/207 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +A SGG DS  L   L  + + R    +    +S+D  +     D +  V    
Sbjct: 49  KGERVAMAASGGKDSTVLAHILSEL-NTRHDYGLDLFLLSIDEGISGYRDDSLETVKRNE 107

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  I   V+S+K               +          R   +   A  + A  + T H
Sbjct: 108 VQYGIPLKVLSYKELYGWTMDEIVKEIGRKNNCTFCGVFRRQALDRGAALMKADKMATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRN 185
             DD  ET+ +   R    +   LS     +  +   L   +PF     ++I  +   + 
Sbjct: 168 NADDMAETILLNLLRGDIAR---LSRCTAIMTGEEGALPRCKPFKYTYEKEIVMYAYFKK 224

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212
           + +            R   R F++D++
Sbjct: 225 LDYFSTECIYSPNAYRGYARDFIKDLE 251


>gi|296242202|ref|YP_003649689.1| PP-loop domain-containing protein [Thermosphaera aggregans DSM
           11486]
 gi|296094786|gb|ADG90737.1| PP-loop domain protein [Thermosphaera aggregans DSM 11486]
          Length = 339

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 100/250 (40%), Gaps = 35/250 (14%)

Query: 8   SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            VR  +R    L    HI+V VSGG DSM LL  L  +   R     + +A+ VD  ++ 
Sbjct: 34  RVRRTIRKHRMLGEKEHIVVGVSGGKDSMSLLHILRKL--SRKNKNWRLTALLVDEGIKG 91

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAARE-------------ARYAL 109
             ++ +  +     R  + + +VS+K+    T     +  RE              R  +
Sbjct: 92  YRENTIPALKIYAERNMVEYKIVSFKDYLGLTLDEIVSTGREKGLPYLPCSYCGVFRRYV 151

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +++ A+ +  T++ TAH  DD ++T  M    +  +K   L  + D   ++  +   +PF
Sbjct: 152 LNKAARELGGTVLATAHNLDDIVQTYLMNVINNSWDKIARLKPVADKGGHEGFVPRIKPF 211

Query: 170 LRCRREDIRSFLLQRNI--------SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
                ++   + L   +         + E     + RF    +R+ + D++      K  
Sbjct: 212 YEVLEKESAIYALVNGLVEPGYHQCPYAE----YNIRFT---IRKILNDLEEKYPGTKYG 264

Query: 222 KFQDLRVKVN 231
             + L   ++
Sbjct: 265 LLRSLEKIIS 274


>gi|224370118|ref|YP_002604282.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
 gi|223692835|gb|ACN16118.1| putative ATPase [Desulfobacterium autotrophicum HRM2]
          Length = 244

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 79/229 (34%), Gaps = 17/229 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDV 76
               I+V VSGG DS+ LL  L  +   ++        + VD     +   ++  YV   
Sbjct: 25  PGDRIVVGVSGGMDSLTLLRMLVDL-KKKAPLDFHLVPVYVDPGFEPSFAGDLKAYVE-- 81

Query: 77  CSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
              L     V    +       + Q          R   + E A+      I   H  DD
Sbjct: 82  -FHLG-PLMVERTDHGIVAHSDENQENPCFLCSRLRRKRLFEIARDQGCNTIALGHNKDD 139

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+++         G   +       +D  L I RP     +  I S          +
Sbjct: 140 LIETLFINMF----YSGAIGTMKPCQSFFDGTLEIIRPLAYVEKRRIVSLSESLGFPAFK 195

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-RVKVNNAVAMLI 238
           +P  +D   +R  VR  +  +     ++K   F+ + RVK++  +   +
Sbjct: 196 NPCPSDGFTKRTAVRHMLEGLYAENPHIKGNIFKAMGRVKMDYLLKQTL 244


>gi|149194409|ref|ZP_01871506.1| hypothetical protein CMTB2_07406 [Caminibacter mediatlanticus TB-2]
 gi|149135584|gb|EDM24063.1| hypothetical protein CMTB2_07406 [Caminibacter mediatlanticus TB-2]
          Length = 262

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 81/229 (35%), Gaps = 30/229 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+A+SGG DS  LL  L  +     F K   +AI++D         +   +   C  
Sbjct: 35  DKVLIALSGGKDSFVLLHVLKRMQLIAPF-KFDLAAITID----AGTGIDYSPLKKWCDS 89

Query: 80  LRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             I + +          +  +P +         R   +   AK +    +   H FDD +
Sbjct: 90  FGIEYILYKTPILEIMNEKKRPGSSPCGFCARMRRGALYSKAKELGFNKLALGHHFDDAV 149

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC--- 189
           ET +M         GM +  M      +  + + RP ++ R + I   + + N       
Sbjct: 150 ETFFMSMF----YNGM-MKSMPPKYKANSGIEVIRPMIKVREKWIEYMVSKNNFPIINGE 204

Query: 190 ------EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
                 +D       + R +V+ +++ ++        K FQ +     N
Sbjct: 205 ESCLALKDSEGVKIPYAREKVKNWLKKMEEEEP----KFFQRMESAFEN 249


>gi|124027476|ref|YP_001012796.1| ATPase [Hyperthermus butylicus DSM 5456]
 gi|123978170|gb|ABM80451.1| predicted ATPase of the PP-loop superfamily [Hyperthermus butylicus
           DSM 5456]
          Length = 331

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 95/247 (38%), Gaps = 32/247 (12%)

Query: 8   SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            VR  +R          I+VAVSGG DSM LL  L  +   +     + +A+ VD  +R 
Sbjct: 21  KVRRTLRRYKLFGPEEKIVVAVSGGKDSMSLLHYLLRL--SKRVPGWRVAALLVDEGIRG 78

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGL----MAAAREARYAL 109
             +  +           + + +  +++              + GL           R  L
Sbjct: 79  YREYTIERFLRFVEEHGVEYRIARFRDEFGYTLDEIVKIGKERGLPYLPCTYCGVFRRYL 138

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +++ A+ + AT++ TAH  DD ++T  M    +  +K   L  +     +   +   +PF
Sbjct: 139 MNKTAREMGATVVATAHNLDDLVQTYLMNVFNNDWDKIARLGPISGPGTHPRFVRKVKPF 198

Query: 170 LRCRREDIRSFLLQRNI--SWCEDPSNTDDRFERV----RVRRFVRDIDLHALYLKMKKF 223
                ++   + +   +   + E P      + R+     +RR + +++  +  +K    
Sbjct: 199 YEVLEKETTIYAVINGLYTGFEECP------YARLSVRWYIRRMLNELEERSPGVKYSLL 252

Query: 224 QDLRVKV 230
           + L+  +
Sbjct: 253 RSLQTAI 259


>gi|312136595|ref|YP_004003932.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311224314|gb|ADP77170.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 306

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 17/181 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L  VSGG DS+ +L  L+ +      G I+   ++VD  ++   +  +       
Sbjct: 47  KGDRVLAGVSGGKDSVAMLDILNIL---HERGIIELEVLTVDEGIKNYREKTLEIAKYHT 103

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            RL I H +V +K+           S  + G        R  + ++  K + A  I  AH
Sbjct: 104 KRLGIPHHIVKFKDCFGITLDEIVSSNVERGPCTYCGVFRRWIFNKIGKKLEADKIAIAH 163

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD+ E + M       +  + L  + ++  +   L   +P       +I  +   + +
Sbjct: 164 NLDDETEAILMNYLEGNIKNLIRLGPISESKDF---LTKIKPLREIPENEIILYTKFKGL 220

Query: 187 S 187
            
Sbjct: 221 K 221


>gi|255953977|ref|XP_002567741.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589452|emb|CAP95596.1| Pc21g06990 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 687

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 19/144 (13%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           L  P    +AVSGG+DSM L      +  S    G I  +A  VDH  R  +  E + V+
Sbjct: 45  LQLPQRFGIAVSGGADSMALAYLCKQLERSSDVAGAISVTAFVVDHRARPESTIEAQKVA 104

Query: 75  DVCSRLRIAHSVVSWKNSK----------PQTG--------LMAAAREARYALISEHAKT 116
                + I   ++S   S           P++G            AR  R+  +      
Sbjct: 105 GWLRDMDIRTHILSLDWSDTTPSQTQLSSPKSGASSPMPSAFETHARRLRFQALGIACHE 164

Query: 117 INATLIMTAHTFDDQLETVYMRSQ 140
                ++  H  DD +ET   R  
Sbjct: 165 FKLETLLLGHHQDDNIETTIWRLS 188



 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 18/151 (11%)

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYLKM 220
            ++I RP L   +  +     + N+ +  DP+N D     R  +R       L       
Sbjct: 271 GIFICRPLLSFTKASLLETCHKNNVPYVSDPTNFDPTLTPRNAIRSLRTSNSLPRALGSQ 330

Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
                +R   +      + +        +++    IL+ D      +++           
Sbjct: 331 SILSLIRSSKD------LLQRSNELSNYLLSSQCRILDFDPKAGSAVIQFLD-------- 376

Query: 281 LPGYRSMERVMLFLKSGKRGCVSIGRVVIDR 311
            P   SM+  +  L   +   +    +V+ R
Sbjct: 377 -PSPASMDPQLATLSESRTRQIQT--IVLRR 404


>gi|301162199|emb|CBW21744.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 249

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 9/170 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +LV +SGG DS+ L+  L    S     +    A+ V         D   Y+ +   
Sbjct: 31  GDKVLVGLSGGKDSLALVELLGK-RSHIFKPRFSVVAVHVVMKNIPYQSDW-DYLREHAE 88

Query: 79  RLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +  +   V       ++  +          R   +   AK      I   H  DD LET+
Sbjct: 89  KNGVPLVVYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDILETL 148

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            M        +G   +     ++   ++ I RP       D+  F   R 
Sbjct: 149 LMNIT----YQGAFSTMPPRLVMNKFDMTIIRPMCLVHEADLLEFAQIRG 194


>gi|156064273|ref|XP_001598058.1| hypothetical protein SS1G_00144 [Sclerotinia sclerotiorum 1980]
 gi|154691006|gb|EDN90744.1| hypothetical protein SS1G_00144 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 430

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL  P   I +  SGG DS  L   L ++ ++R    ++   +S+D  ++    D +  V
Sbjct: 46  SLFSPGDRIAIGASGGKDSTVLASVLKTL-NERYNYGLELVLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V               +  + G        R   +   AK +    +
Sbjct: 105 KRNAIQYEMPLKIVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKMLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ET+ M   R    +   L+     +  D +  + R  P      ++I  +
Sbjct: 165 VTGHNADDVAETILMNLLRGDLPR---LARSTSIVTGDESSDVRRSKPLKYAYEKEIVLY 221

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R  +++++
Sbjct: 222 AHHKKLDYFSTECLYSPEAFRGSARSLIKNLE 253


>gi|148642613|ref|YP_001273126.1| PP family ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|261349566|ref|ZP_05974983.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
 gi|148551630|gb|ABQ86758.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii ATCC 35061]
 gi|288861524|gb|EFC93822.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
          Length = 305

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 15/191 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +LVA+SGG DS+  L  L+S    R    I   A++VD  +    ++ V   
Sbjct: 43  KLLDKGDKVLVALSGGKDSVTTLEILNSF---RKMNIIDICAVTVDEGIDNYRQEGVDIA 99

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                RL I H VVS K                 G  +     R  +I++ A+ + AT I
Sbjct: 100 IRHAKRLGIEHKVVSLKEEYGITLDEIMQKDNHIGSCSYCGVFRRTIINKAAREMGATKI 159

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD+++ + M       +    L     +   +  + I +P       +I  +++
Sbjct: 160 ATGHNLDDEVQAIMMNYLEGNTDNLTKLGAKSSSKAKEFTVKI-KPLREIPEREIGLYVV 218

Query: 183 QRNISWCEDPS 193
            + +    D  
Sbjct: 219 AKELEVHFDSC 229


>gi|57168713|ref|ZP_00367845.1| conserved hypothetical protein [Campylobacter coli RM2228]
 gi|57019994|gb|EAL56674.1| conserved hypothetical protein [Campylobacter coli RM2228]
          Length = 251

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L  + +   F K +  A +    L     ++   +   C 
Sbjct: 25  GDKVLLGLSGGKDSLALAHLLKRMQAHAPF-KFELEAAT----LSYGMGEDYSGLHAHCE 79

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV       VS    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHGIKHSVIDSNIYEVSGDTIRQNSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R    Q  +   
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGITVIRPLIFVRERQLRDNATQNELQVI 192


>gi|307102713|gb|EFN50982.1| hypothetical protein CHLNCDRAFT_141632 [Chlorella variabilis]
          Length = 467

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 18/213 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            R       + VA SGG DS  L   + ++ + R    +    +S+D  +     D +  
Sbjct: 44  ARLFRPGERVAVAASGGKDSTVLAHMMTTL-NQRHGYGLDLFLLSIDEGISGYRDDSLDT 102

Query: 73  VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121
           V    ++ +I   V S+K+                         R   +   A  + A  
Sbjct: 103 VKRNEAQYQIPLHVFSYKDLYGWTMDEIVREIGTRSNCTFCGVFRRQALDRGAALVGAHK 162

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRS 179
           I T H  DD  ETV +   R    +     G C  I+   D +L   +PF     ++I  
Sbjct: 163 IATGHNADDVAETVLLNIIRGDVPR----LGRCANIITGEDSSLPRVKPFKYTYEKEIVM 218

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   + + +            R   R FV+D++
Sbjct: 219 YAYFKRLDYFSTECIYAPYAARGFAREFVKDLE 251


>gi|284162492|ref|YP_003401115.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631]
 gi|284012489|gb|ADB58442.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631]
          Length = 308

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 19/200 (9%)

Query: 2   FLSPIE-SVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F+   E  V++ ++          I +A+SGG DS+ L   LH  LS R    ++  AI+
Sbjct: 27  FIEYFERKVKYAIKKFNMIESGDRIAIALSGGKDSVTLTYVLHKFLSKRR--DVELFAIT 84

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARY 107
           VD  +       V+    + S L I H +VS+K+                        R 
Sbjct: 85  VDEGIEGYRPPTVKIARKITSELGIEHIIVSFKDYFGMTLDEMVKLGDKKPCTYCGVFRK 144

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            L+++ A+ + AT + T H  DD+++T+ +   +   E+   L+ +    + +  +   +
Sbjct: 145 YLLNKTAREMGATKLATGHNLDDEVQTILLNFLQADIER---LARLIPQRVQEGLIMRIK 201

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           PF      D+  + L  N+ 
Sbjct: 202 PFREVYERDVVVYGLLHNLP 221


>gi|170758613|ref|YP_001785494.1| hypothetical protein CLK_3340 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405602|gb|ACA54013.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 240

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L    S  S  K    AI++D         +   + +
Sbjct: 18  IQNGDKIAVGLSGGKDSIVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72

Query: 76  VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           VCS + +   +          + + +    +     R   ++ ++K +    I   H  +
Sbjct: 73  VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G        T L   N+ I RP +      I+S + + ++   
Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           ++P   +   +R  ++     ++     +K +  
Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222


>gi|168177499|ref|ZP_02612163.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|168182225|ref|ZP_02616889.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|226947389|ref|YP_002802480.1| hypothetical protein CLM_0209 [Clostridium botulinum A2 str. Kyoto]
 gi|237793484|ref|YP_002861036.1| hypothetical protein CLJ_B0204 [Clostridium botulinum Ba4 str. 657]
 gi|182671105|gb|EDT83079.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916]
 gi|182674626|gb|EDT86587.1| conserved hypothetical protein [Clostridium botulinum Bf]
 gi|226842841|gb|ACO85507.1| conserved hypothetical protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261836|gb|ACQ52869.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 240

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L    S  S  K    AI++D         +   + +
Sbjct: 18  IQNGDKIAVGLSGGKDSIVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72

Query: 76  VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           VCS + +   +          + + +    +     R   ++ ++K +    I   H  +
Sbjct: 73  VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G        T L   N+ I RP +      I+S + + ++   
Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           ++P   +   +R  ++     ++     +K +  
Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222


>gi|148378171|ref|YP_001252712.1| hypothetical protein CBO0165 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931125|ref|YP_001382571.1| hypothetical protein CLB_0202 [Clostridium botulinum A str. ATCC
           19397]
 gi|153937579|ref|YP_001386124.1| hypothetical protein CLC_0213 [Clostridium botulinum A str. Hall]
 gi|148287655|emb|CAL81720.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927169|gb|ABS32669.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933493|gb|ABS38992.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 240

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 15/214 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L    S  S  K    AI++D         +   + +
Sbjct: 18  IQNGDKIAVGLSGGKDSIVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72

Query: 76  VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           VCS + +   +          + + +    +     R   ++ ++K +    I   H  +
Sbjct: 73  VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKKLGCNKIALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G        T L   N+ I RP +      I+S + + ++   
Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRPMIYIDEIAIKSMIKRYDLPII 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           ++P   +   +R  ++     ++     +K +  
Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222


>gi|222445889|ref|ZP_03608404.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435454|gb|EEE42619.1| hypothetical protein METSMIALI_01535 [Methanobrevibacter smithii
           DSM 2375]
          Length = 305

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 15/191 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +LVA+SGG DS+  L  L+S    R    I   A++VD  +    ++ V   
Sbjct: 43  KLLDKGDKVLVALSGGKDSVTTLEILNSF---RKMNVIDICAVTVDEGIDNYRQEGVDIA 99

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                RL I H VVS K                 G  +     R  +I++ A+ + AT I
Sbjct: 100 IRHAKRLGIEHKVVSLKEEYGITLDEIMQKDNHIGSCSYCGVFRRTIINKAAREMGATKI 159

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD+++ + M       +    L     +   +  + I +P       +I  +++
Sbjct: 160 ATGHNLDDEVQAIMMNYLEGNTDNLTKLGAKSSSKAKEFTVKI-KPLREIPEREIGLYVV 218

Query: 183 QRNISWCEDPS 193
            + +    D  
Sbjct: 219 AKELEVHFDSC 229


>gi|50292393|ref|XP_448629.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74608911|sp|Q6FMB5|CTU1_CANGA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|49527941|emb|CAG61592.1| unnamed protein product [Candida glabrata]
          Length = 358

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 17/210 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 + +  SGG DS  L   L  +L+DR    +K   +S+D  +     D +  V  
Sbjct: 64  FQRGEKVAIGASGGKDSTVLAHILK-LLNDRHDYGVKLVLLSIDEGIVGYRDDSLATVKR 122

Query: 76  VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              + ++   +VS+++                         R   +   A  ++   ++T
Sbjct: 123 NQKQYQLPLEIVSFRDLYDWTMDEIVAIAGIRNSCTYCGVFRRQALDRGAAKLDINHVVT 182

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182
            H  DD  ETV M   R    +   L      I       I R  PF  C +++I  +  
Sbjct: 183 GHNADDMAETVLMNILRGDVAR---LERSTAIITQSAGSPIRRSKPFKYCYQKEIVLYAH 239

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R  +++++
Sbjct: 240 YKKLDYFSTECTYAPEAFRGTARELMKNLE 269


>gi|57505313|ref|ZP_00371242.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57016449|gb|EAL53234.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 252

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 17/185 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +  +       + +     +L+ +SGG DS+ L   L  + +   F K +  A +    
Sbjct: 8   LIRQVAQANAKFKLIENNDKVLLGLSGGKDSLTLAHLLKRMQAHAPF-KFELEAAT---- 62

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHA 114
           L     ++   +   C    I HSV+       S    +  +   +     R   +  +A
Sbjct: 63  LSYGMGEDYSKLHAHCEEHGIKHSVIESNIYEISGDTIRENSSFCSYFSRMRRGALYTYA 122

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +  AH  DD  E+ +M    + A     L  +         + I RP +  R 
Sbjct: 123 LEKGFNKLAIAHHLDDAAESFFMNFIHNGA-----LRTLAPIYKSKRGITIIRPLIFVRE 177

Query: 175 EDIRS 179
             +R 
Sbjct: 178 RQLRD 182


>gi|170780553|ref|YP_001708885.1| hypothetical protein CMS_0097 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155121|emb|CAQ00221.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 341

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 114/307 (37%), Gaps = 16/307 (5%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LVA+SGG+DS+ L  A                    DH L++ + D     +D    L +
Sbjct: 35  LVALSGGADSLALAAAAAFEGPRAGVAVGAVVV---DHGLQDGSADVAARAADAARALGL 91

Query: 83  -AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
               V   +  +  +G  AAAR ARYA   +  +   +  ++ AHT DDQ ETV +   R
Sbjct: 92  APVVVTRVRVDRSASGPEAAARAARYAAFDDALRATGSRALLLAHTLDDQAETVLLGLAR 151

Query: 142 DYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                   L GM  +        +  RP L  R    R+    + +   +DP N D  + 
Sbjct: 152 GSGA--ASLHGMARSTPARTAGAVHLRPLLGIRAAITRAACADQGLDPWQDPHNADPSYA 209

Query: 201 RVRVRRFVRDIDLHALYLKMK--------KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           RVRVR  V  +    L   +         + ++    + +  A ++ +        I   
Sbjct: 210 RVRVRHDVLPVLERELGPGIAVALARTADQLREDDDALEHFAAEMVEEIADHAEAGISLE 269

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRR 312
              +L     L   L+R  AA       L     +E   L      +G V +  V + R+
Sbjct: 270 VASLLAAPPALRHRLIR-LAAREEFAAHLSRTHVLEVARLVTDWHGQGPVDLPGVRVLRK 328

Query: 313 ANFLWIT 319
              + ++
Sbjct: 329 DELIVLS 335


>gi|251773216|gb|EES53768.1| TRNA(Ile)-lysidine synthetase [Leptospirillum ferrodiazotrophum]
          Length = 439

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 17/249 (6%)

Query: 67  KDEVRYVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             +  +V+ + +RL          S +  +PQ       R+ R    + +      +++ 
Sbjct: 6   ARDKDFVTSLAARLGARLVLGESRSIEKRRPQVS-ETLLRQERQDFFNAYLAENPRSVLF 64

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD++ETV     R    +G+         + + N  I RP L   RE+IR  L +
Sbjct: 65  LGHQKDDRIETVLANLFRGTGPRGL-------VGIPEKNGKIYRPLLFLEREEIRQALRE 117

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF----QDLRVKVNNAVAMLIP 239
              ++ EDP+N D    R R+R  +R                    +  +++ +  +   
Sbjct: 118 AGEAFMEDPANFDLGPLRNRIRLELRPAIDRIFPGGTAHLDALAHHMAQELSASAPLSAG 177

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ--ISLPGYRSMERVMLFLKSG 297
             L       + +S  +    +         +      Q  + LP  R++ R +    SG
Sbjct: 178 PLLIFEDPGYVRLSLRLFRALAPSRQAAFSRNILDRQRQWKLPLPPERNLLRTLATPPSG 237

Query: 298 KRGCVSIGR 306
                 +G 
Sbjct: 238 PLRHFPLGG 246


>gi|315052150|ref|XP_003175449.1| PP-loop ATPase superfamily protein [Arthroderma gypseum CBS 118893]
 gi|311340764|gb|EFQ99966.1| PP-loop ATPase superfamily protein [Arthroderma gypseum CBS 118893]
          Length = 428

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 14/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL  P   I +  SGG DS  L   L ++ +  ++G +    +S+D  ++    D +  V
Sbjct: 46  SLFAPGERIAIGASGGKDSTVLASVLKTLNARYNYG-LDLVLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS                 + G        R   +   A  +N   +
Sbjct: 105 KRNAIQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    + +  S    T     ++  S+P      ++I  +  
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAH 223

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R  ++D++
Sbjct: 224 HKKLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|123439490|ref|XP_001310516.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121892289|gb|EAX97586.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 280

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 17/200 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---D--HCLRETAKDEVRYV 73
              IL+ +SGG DS+ L   L   + +++F   +  A  +   +  + +      + +Y+
Sbjct: 28  GDRILIGLSGGKDSLTLTHYLSEWMREKNFS-FQVVAAHIKFSNLPYGI------DAKYL 80

Query: 74  SDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            D CS  ++ +      +                   R A + E A+  N   +   H  
Sbjct: 81  EDFCSSRKVEYHLVEDQIRDVYLENEHKETCIHCSRFRRAKLMELARKFNCNKLTLGHHL 140

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD + T+ M   +     GM +           N+ + RP       DI+ F  +     
Sbjct: 141 DDIVATLIMNMTQHGRFAGMAVKLDITVGEEKYNMTMIRPLAYTPEMDIKQFCAENEFQP 200

Query: 189 CEDPSNTDDRFERVRVRRFV 208
            +      D   R + R+ V
Sbjct: 201 AKCRCPWGDTGVRSKTRQAV 220


>gi|302845885|ref|XP_002954480.1| hypothetical protein VOLCADRAFT_64899 [Volvox carteri f.
           nagariensis]
 gi|300260152|gb|EFJ44373.1| hypothetical protein VOLCADRAFT_64899 [Volvox carteri f.
           nagariensis]
          Length = 455

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 17/211 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +A SGG DS  L   + ++ +   +G +    +S+D  +     D +  V
Sbjct: 46  KLFRPGERVAIAASGGKDSTVLAHIMTTLNARYGYG-LDLFLLSIDEGIAGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  I  +VVS+K+                         R   +   A    A  I
Sbjct: 105 KRNEQQYGIPLTVVSYKDLYGWTMDEIVAQIGTKNNCTFCGVFRRQALDRGAVLAGANKI 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSFL 181
            T H  DD  ETV +   R    +   LS   + I   D  L   +PF     ++I  + 
Sbjct: 165 ATGHNADDVAETVLLNILRGDVPR---LSRCANIITGGDSPLPRVKPFKYAYEKEIVLYA 221

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             + + +            R   R F++D++
Sbjct: 222 YYKKLDYFSTECVYAPYAARGFAREFIKDLE 252


>gi|313203419|ref|YP_004042076.1| pp-loop domain protein [Paludibacter propionicigenes WB4]
 gi|312442735|gb|ADQ79091.1| PP-loop domain protein [Paludibacter propionicigenes WB4]
          Length = 258

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 83/237 (35%), Gaps = 35/237 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD----- 68
           R +    HIL+ +SGG DS+ L+  L          + K +A+ +       + +     
Sbjct: 27  RLIDNDDHILIGLSGGKDSLALVELLGE-RQKIFVPRFKVTAVHI-------SVENIPYQ 78

Query: 69  -EVRYVSDVCSRLRIA--HSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMT 124
            ++ Y+   C++  I   H V  + ++              R   + + A+ +    +  
Sbjct: 79  SDLEYLKTYCNKFDIPFVHHVTRFDDTTDTHKSTCFLCSWHRRKALFDVARNLGCNKLAL 138

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED------IR 178
            H  DD  ET+ +        +G   +      +   ++ I RP      ++      I 
Sbjct: 139 GHHLDDITETLLLNLF----YQGSFGTMPPKLKMNKFDMAIIRPLALISEKEMKEMERIE 194

Query: 179 SFLLQ-RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
           ++  Q +N    +D S  D +         + +++     ++   +  +    +  +
Sbjct: 195 AYQKQIKNCPHEKDSSRRDAK-------NLISELEKWNPDVRQSIWAAMENIKSEYL 244


>gi|327401180|ref|YP_004342019.1| hypothetical protein Arcve_1298 [Archaeoglobus veneficus SNP6]
 gi|327316688|gb|AEA47304.1| protein of unknown function UPF0021 [Archaeoglobus veneficus SNP6]
          Length = 307

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 24/218 (11%)

Query: 7   ESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + VR+ V   R +     I +A+SGG DS+ L  AL  +  +R    ++F AI++D  ++
Sbjct: 32  KRVRYAVKKYRMIESGDKIAIALSGGKDSVALTFALDRLYGERK--DVEFVAITIDEGIK 89

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEH 113
                 V    ++ S+L I H +VS+K                         R  L++  
Sbjct: 90  GYRPPTVEIAREITSQLGIEHHIVSFKENFGMALDEMVKLGDKKPCTYCGVFRKYLLNRT 149

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ + AT + TAH  DD+ +T+ +   +   E+   L+ +    +    +   +PF    
Sbjct: 150 ARELGATKLATAHNLDDETQTILLNFLQADIER---LARLVPQRVQKGLVMRIKPFREIY 206

Query: 174 REDIRSFLLQRNISWCEDPSNTDD-RFE--RVRVRRFV 208
            +++  + L  ++       N     +   R  +R F+
Sbjct: 207 EKEVVVYCLLFDLPM---DMNECPYSYFPVRAAIRDFL 241


>gi|295104134|emb|CBL01678.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Faecalibacterium prausnitzii SL3/3]
          Length = 253

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 20/222 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKDEVR 71
           +     ++V VSGG DS+ L I L  +     F   +  A++     DH        +  
Sbjct: 11  IAPGDRVMVGVSGGKDSVALTIGLSMLRKYIGF-DYEVVAVTLDPQFDHQ-----PMDYS 64

Query: 72  YVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            ++++  +  I + V   +        + +    A   + R   +   A+ +    +   
Sbjct: 65  ALAELFRQHGIPYEVRRTEIGPVVFEYRKEKNPCALCAKLRRGALHTAAQELGCNKVALG 124

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET YM   R    +G        T L   +L + RP L     +++  + +  
Sbjct: 125 HHLDDAVETFYMNLWR----EGRIGCFSPVTYLSQRDLTLIRPMLLATEYEVQCAVREAG 180

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +   +     D    R + + FV++        + K    L+
Sbjct: 181 LPIVKSRCPADGVTVREQTKEFVQERCRTDHAFRQKTLHALQ 222


>gi|159486883|ref|XP_001701466.1| adenine nucleotide hydrolase [Chlamydomonas reinhardtii]
 gi|226711414|sp|A8JF71|CTU1_CHLRE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|158271648|gb|EDO97463.1| adenine nucleotide hydrolase [Chlamydomonas reinhardtii]
          Length = 357

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 79/232 (34%), Gaps = 18/232 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +   + VA SGG DS  L   + ++ +  ++G +    +S+D  +     D +  V    
Sbjct: 50  HGERLAVAASGGKDSTVLAHIMSTLNARYNYG-LDLFLLSIDEGITGYRDDSLETVKRNE 108

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  I   VVS+K                          R   +   A  + A  I T H
Sbjct: 109 QQYGIPLKVVSYKELYGWTMDEIVSQIGTKNNCTFCGVFRRQALDRGAVLMGANKIATGH 168

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL--YDLNLWISRPFLRCRREDIRSFLLQR 184
             DD  ETV +   R    +     G C  I+   D +L   +PF     ++I  +   +
Sbjct: 169 NADDVAETVLLNILRGDVPR----LGRCANIITGEDSSLPRVKPFKYAYEKEIVLYAYYK 224

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            + +            R   R F++D++       +   +     V  A + 
Sbjct: 225 KLDYFSTECIYAPFAARGFAREFIKDLEAARPLAIIDVIRSAEDFVFAAASD 276


>gi|268573102|ref|XP_002641528.1| Hypothetical protein CBG09825 [Caenorhabditis briggsae]
          Length = 657

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 27/228 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAIS 57
           M+    + +   ++ +     +LV +SGG DS+ LL  L       +  +    +  AI+
Sbjct: 406 MYKKVTDVIHQ-LKMIRNGDKVLVCLSGGKDSLSLLHILRHYQQRCNKARSTSFQLGAIT 464

Query: 58  VDHCLRETAKDEVRY----VSDVCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARY 107
           VD      +     +    + + C +L I +      ++      P    + A     + 
Sbjct: 465 VD----PGS---AEFNPRPLIEYCRKLNIDYFYEEQDIIGAAMKTPGLRSICAFCSRMKR 517

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             ++  A+     ++      DD  E+ ++ + ++    G   +        D  L + R
Sbjct: 518 GRLAAAAQFHGWNVLAMGQHLDDLAESFFIAAFQN----GNLSTMKAQYTTKDNQLRVIR 573

Query: 168 PFLRCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL 213
           P +  R + +R+F  ++ +       P+  +   ER R+++ +   +L
Sbjct: 574 PLIMVREKALRNFAEEKKLPVVAENCPACFNQATERHRIKQLLAQQEL 621


>gi|308502159|ref|XP_003113264.1| hypothetical protein CRE_25488 [Caenorhabditis remanei]
 gi|308265565|gb|EFP09518.1| hypothetical protein CRE_25488 [Caenorhabditis remanei]
          Length = 985

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 88/225 (39%), Gaps = 21/225 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAIS 57
           M+    + +   ++ +     +LV +SGG DS+ LL  L       +  +    +  AI+
Sbjct: 731 MYKKTTDIIHQ-LKMIRNGDKVLVCLSGGKDSLSLLHILRHYQLRCNKARSTSFELGAIT 789

Query: 58  VDHCLRETAKD-EVRYVSDVCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARYALI 110
           VD      + +   R + + C +L I +      ++      P    + A     +   +
Sbjct: 790 VD----PGSAEYNPRPLIEYCRKLNIDYFYEEQDIIGAAKKTPGLRSICAFCSRMKRGRL 845

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +  A+  N  ++      DD  E+ ++ + ++    G   +        D  L + RP +
Sbjct: 846 AAAAQYHNWNVLAMGQHLDDLAESFFIAAFQN----GNLSTMKAQYTTKDGTLRVIRPLV 901

Query: 171 RCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL 213
             R + +R+F   + +       P+  +   ER R+++ +   +L
Sbjct: 902 MVREKALRNFAEDKKLPVVAENCPACFNQATERHRIKQLLAQQEL 946


>gi|320032845|gb|EFW14795.1| PP-loop ATPase superfamily protein [Coccidioides posadasii str.
           Silveira]
          Length = 431

 Score =  106 bits (266), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 14/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L YP   + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V
Sbjct: 46  ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS                 + G        R   +   A  +    +
Sbjct: 105 KRNAVQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    +    + +  T      +  S+P      ++I  +  
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLARGTYIV-TGSSASEIKRSKPLKYAYEKEIVLYAH 223

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            +N+ +            R   R  ++D++
Sbjct: 224 HKNLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|229819197|ref|YP_002880723.1| tRNA(Ile)-lysidine synthetase [Beutenbergia cavernae DSM 12333]
 gi|259533670|sp|C5BYK3|TILS_BEUC1 RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|229565110|gb|ACQ78961.1| tRNA(Ile)-lysidine synthetase [Beutenbergia cavernae DSM 12333]
          Length = 330

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 11/180 (6%)

Query: 17  VYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           + PA  +LVA SGG+     L    +             A+ VDH L+  + +     +D
Sbjct: 22  LEPARGVLVACSGGA---DSLALAAATAFVAPRAGRAAGAVVVDHALQAGSAEVAARAAD 78

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            C  L +   VV         G   AAR ARYA +   ++     +++  HT DDQ ETV
Sbjct: 79  QCRGLGLEARVVRVDVDIALGGPEGAARAARYAALEAASREAGDAVVLLGHTLDDQAETV 138

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +R  R    + +                 +RPFL   R  +R  +    ++  EDP+N 
Sbjct: 139 LLRLARGSGARSLAGM-------PRRRGVFARPFLHLERARLREVVDAVGLTPWEDPTNA 191


>gi|312143894|ref|YP_003995340.1| PP-loop domain protein [Halanaerobium sp. 'sapolanicus']
 gi|311904545|gb|ADQ14986.1| PP-loop domain protein [Halanaerobium sp. 'sapolanicus']
          Length = 255

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 10/190 (5%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I V VSGG DS  LL  L  +            A+ VD      ++ E   +S +   
Sbjct: 27  DKIAVGVSGGKDSSFLLYCLKILQLHFKI-DFSLKAVYVDPGF-GDSQAEDN-LSTLTKE 83

Query: 80  LRIAHSVVSWKNS---KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           L +   V+  K     +  +   +     R   I E+   IN   +   H  DD +ET  
Sbjct: 84  LGVDFKVIRTKIKDYIQKDSNPCSKCAHFRKGAIIEYLNKINYNKLAFGHHLDDAVETFL 143

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +        + +      +  L +  + I RP +  R   I + + ++N    +     D
Sbjct: 144 LSIFYSGQLQAL----KANRYLSENKINIIRPLIYLRETQIENEIEKKNFKIAKSSCPYD 199

Query: 197 DRFERVRVRR 206
           D   R +VR+
Sbjct: 200 DASARSKVRQ 209


>gi|123508298|ref|XP_001329605.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121912651|gb|EAY17470.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 328

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 32/218 (14%)

Query: 15  SLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEV 70
           +L+ P  ++ + VSGG DS  LL  LH++ + R     +   I +D  +   R+ A + V
Sbjct: 44  NLIQPGDVVGIGVSGGKDSTCLLHVLHTI-NQRHNMGFQIHMICIDEGIVGYRDNALEAV 102

Query: 71  RYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINA 119
           ++  +   +  +  +++ +             +             R   +   A  + A
Sbjct: 103 KFNKE---KYGLPCTIIPFNELFGWNLDDIYKATHTKETCTYCGIFRRRSLDIAAARVGA 159

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEK-GMGL----SGMCDTILYDLNLWISRPFLRCRR 174
             +   H  +D  ETV +   R    + G  +     G+   +         +PF    +
Sbjct: 160 NKVAVGHNANDVAETVLLNVLRGDINRFGRSVDIKTDGISSNVEEGTVAPRIKPFAFQTQ 219

Query: 175 EDIRSFLLQRNISW--CEDPSNTDDRFERVRVRRFVRD 210
            DI  ++  +N+ +   E P      +     RRF R+
Sbjct: 220 RDIVLYVHFQNLRYYAVECP------YAVTAFRRFSRE 251


>gi|304314090|ref|YP_003849237.1| ATPase [Methanothermobacter marburgensis str. Marburg]
 gi|302587549|gb|ADL57924.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg]
          Length = 314

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 68/180 (37%), Gaps = 14/180 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LV +SGG DS+ +   L  +   R+   I+  A+++D  +    +D +R     C
Sbjct: 47  RGDRVLVGLSGGKDSVMVTDILDEL---RNRNIIELEAVTIDEGISGYREDGIRAAGRFC 103

Query: 78  SRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +   I H VV  K+            P  G        R  +++  A+   AT I T H 
Sbjct: 104 AERGIPHRVVKLKDYAGITLDEIMKNPSRGACTYCGVFRRWILNREARKSGATKIATGHN 163

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD+ + + M       E    +  +  T      +   +P       ++  ++L R + 
Sbjct: 164 LDDECQAIVMNYLEGNLENLTRIGPVTSTAG-GRFIPKIKPLREIPEREVGLYVLARGLD 222


>gi|294630626|ref|ZP_06709186.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. e14]
 gi|292833959|gb|EFF92308.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. e14]
          Length = 317

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 12/305 (3%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+DSM L  AL           I+   ++VDH L+  +      V+     L 
Sbjct: 17  VLVACSGGADSMALASALAFEAPKLG---IRAGGVTVDHGLQTGSDLRAGEVAQRLRELG 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +            + G  AAAR+ARYA +   A+   A  ++       +          
Sbjct: 74  LDPVDAVAVTVGREGGPEAAARDARYAALDAAAERHGAAAVLLGPHPR-RPRPRPYCWGS 132

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
             A     LSGM             RPFL   R+  R   L +++   +DP N D  + R
Sbjct: 133 PAAPGIRSLSGMAAVS--GAGGRYRRPFLHLDRQTARKACLVQSLPVWDDPHNADPAYTR 190

Query: 202 VRVRRF----VRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            R+R      +       +   + +   L     +A+     +           +    L
Sbjct: 191 SRLRHEGLPALEKALGKGVVEALARTAQLSRDDADALDAWASQADAAVRDDAGRLECAKL 250

Query: 258 NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG--KRGCVSIGRVVIDRRANF 315
           ++    +   +   AAI  G  +   +      +  L +G   +G +++   V+ RR   
Sbjct: 251 SVLPPAVRRRILRRAAIEAGAPAGSLFARHIEEVDRLITGWRGQGAINLPGKVVARRQGG 310

Query: 316 LWITR 320
             + R
Sbjct: 311 RLVIR 315


>gi|303322809|ref|XP_003071396.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240111098|gb|EER29251.1| PP-loop family protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 431

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 72/209 (34%), Gaps = 14/209 (6%)

Query: 16  LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           L YP   + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V 
Sbjct: 47  LFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVK 105

Query: 75  DVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
               +  +   +VS                 + G        R   +   A  +    ++
Sbjct: 106 RNAVQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLGIKHVV 165

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD  ETV M   R    +    + +  T      +  S+P      ++I  +   
Sbjct: 166 TGHNADDVAETVMMNLLRGDLPRLARGTYIV-TGSSASEIKRSKPLKYAYEKEIVLYAHH 224

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +N+ +            R   R  ++D++
Sbjct: 225 KNLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|119496839|ref|XP_001265193.1| PP-loop ATPase superfamily protein, putative [Neosartorya fischeri
           NRRL 181]
 gi|119413355|gb|EAW23296.1| PP-loop ATPase superfamily protein, putative [Neosartorya fischeri
           NRRL 181]
          Length = 420

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 16/211 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL YP   + +  SGG DS  L   L ++ ++R    ++   +S+D  ++    D +  V
Sbjct: 46  SLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLELCLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V                  + G        R   +   A  +    +
Sbjct: 105 KRNAVQYDMPLEIVGYSELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +T H  DD  ETV M   R    +   G S + D+   D  +  S+P      ++I  + 
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTDSAASD--IKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             + + +            R   R  ++D++
Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|70990742|ref|XP_750220.1| PP-loop ATPase superfamily protein [Aspergillus fumigatus Af293]
 gi|66847852|gb|EAL88182.1| PP-loop ATPase superfamily protein, putative [Aspergillus fumigatus
           Af293]
 gi|159130696|gb|EDP55809.1| PP-loop ATPase superfamily protein, putative [Aspergillus fumigatus
           A1163]
          Length = 420

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 16/211 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           SL YP   + +  SGG DS  L   L ++ ++R    ++   +S+D  ++    D +  V
Sbjct: 46  SLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLELCLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V                  + G        R   +   A  +    +
Sbjct: 105 KRNAVQYDMPLEIVGYSELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +T H  DD  ETV M   R    +   G S + D+   D  +  S+P      ++I  + 
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLSRGTSIVTDSAASD--IKRSKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             + + +            R   R  ++D++
Sbjct: 223 HHKKLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|329960742|ref|ZP_08299066.1| PP-loop family protein [Bacteroides fluxus YIT 12057]
 gi|328532457|gb|EGF59255.1| PP-loop family protein [Bacteroides fluxus YIT 12057]
          Length = 247

 Score =  106 bits (265), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +     + V   +  +   +   V Y+ +
Sbjct: 31  GDKILIGLSGGKDSLALVELLAK-RARIYKPEFSIVVVHVVMKN--IPYQSD--VEYLRE 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +   +   +    +  +          R   +   AK      I   H  DD L
Sbjct: 86  YVESWGVPFLLYETEFDAATDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R 
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLMELAQARG 194


>gi|322698661|gb|EFY90429.1| VEG136 protein [Metarhizium acridum CQMa 102]
          Length = 393

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 21/228 (9%)

Query: 2   FLSPIE-SVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           FLS  E  V   + S  L YP   + +  SGG DS  L   L ++ ++R    +    +S
Sbjct: 29  FLSAFEDEVHHTITSSKLFYPGEKVAIGASGGKDSTVLASVLKTL-NERHNYGLDLVLLS 87

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREAR 106
           +D  ++    D +  V     +  +   +V               +  + G        R
Sbjct: 88  IDEGIKGYRDDSLETVKRNAVQYDMPLKIVGYDELFGWTMDQVVETIGKKGNCTYCGVFR 147

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
              +   A  +N   ++T H  DD  ETV M   R    +   LS     +    +  I 
Sbjct: 148 RQALDRGANLLNIKHVVTGHNADDIAETVLMNLLRGDLPR---LSRSTSIVTGSASTGIQ 204

Query: 167 R--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           R  P      ++I  +   + + +            R   R  ++ ++
Sbjct: 205 RSKPLKYAYEKEIVLYAHHKKLDYFSTECIYSPEAFRGTARTLIKSLE 252


>gi|160944932|ref|ZP_02092159.1| hypothetical protein FAEPRAM212_02448 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444116|gb|EDP21120.1| hypothetical protein FAEPRAM212_02448 [Faecalibacterium prausnitzii
           M21/2]
          Length = 266

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 20/222 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKDEVR 71
           +     ++V VSGG DS+ L I L  +     F   +  A++     DH        +  
Sbjct: 24  IAPGDRVMVGVSGGKDSVALTIGLSMLRKYIGF-DYEVVAVTLDPQFDHQ-----PMDYS 77

Query: 72  YVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            ++++  +  I + V   +        + +    A   + R   +   A+ +    +   
Sbjct: 78  ALAELFRQHGIPYEVRRTEIGPVVFEYRKEKNPCALCAKLRRGALHTAAQELGCNKVALG 137

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET YM   R    +G        T L   +L + RP L     +++  + +  
Sbjct: 138 HHLDDAVETFYMNLWR----EGRIGCFSPVTYLSQRDLTLIRPMLLATEYEVQCAVREAG 193

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +   +     D    R + + FV++        + K    L+
Sbjct: 194 LPIVKSRCPADGVTVREQTKEFVQERCRTDHAFRQKTLHALQ 235


>gi|71748080|ref|XP_823095.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70832763|gb|EAN78267.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 336

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 17/212 (8%)

Query: 15  SLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            L  P  I VA   SGG DS  L+  +  +L+++    I+   +S+D  +     D ++ 
Sbjct: 47  KLFKPGDI-VACGASGGKDSTVLIHLMK-LLNEQHEYGIQLLLLSIDEGIAGYRDDSLKT 104

Query: 73  VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121
           V        +   V+S+K                          R   +   A  + AT 
Sbjct: 105 VHRNAEVYNLPLRVLSYKELYGWTMDEVVKVTGLRSSCTYCGVFRRQALDRGAAMLGATK 164

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++T H  DD  ET+ M   R    +             +  L   +P      ++I  + 
Sbjct: 165 VVTGHNADDLAETILMNILRGDLPRLS--RCTSAITSGESLLPRVKPLKYAYEKEIVLYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213
             + + +            R   R  +++I++
Sbjct: 223 HFKKLDYFTTECTYSKEAFRSEARTLLKNIEI 254


>gi|224372386|ref|YP_002606758.1| PP-loop family protein [Nautilia profundicola AmH]
 gi|223589891|gb|ACM93627.1| PP-loop family protein [Nautilia profundicola AmH]
          Length = 259

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 26/216 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++VA SGG DS  +L  L  +     F K    A+++D         +   +   C 
Sbjct: 31  GDRVMVAFSGGKDSFVMLHVLKRMQLIAPF-KFDLLAVTID----AGTGIDYTPLKKHCE 85

Query: 79  RLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I + +          +  +P +         R   +   A  +    I   H FDD 
Sbjct: 86  EFGIEYIIYETPILEILEEKKRPGSSACGFCARMRRGALYTKALELGYNKIALGHHFDDA 145

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET +M    +   +      M         + + RP ++ R + I+    Q N    + 
Sbjct: 146 VETFFMSMFYNGMMRS-----MPPKYKAYNEIEVIRPLIKVREKWIKYMSEQNNFPIIDG 200

Query: 192 PS-----NTDDR----FERVRVRRFVRDIDLHALYL 218
            S     N  D+    + R  ++ ++R+++     L
Sbjct: 201 ESSCLAFNESDQAKTPYVRSEIKEWLRNMEEKEPKL 236


>gi|312065342|ref|XP_003135744.1| tRNA 2-thiolation protein 1 [Loa loa]
 gi|307769103|gb|EFO28337.1| tRNA 2-thiolation protein 1 [Loa loa]
          Length = 321

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 16/207 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + V  SGG DS  L+  L+ +     +G +    +S+D  +     D ++ V    
Sbjct: 47  KGKKVAVGASGGKDSTVLIHVLNKLNQKYDYG-LDIILLSIDEGITGYRDDSLKAVERNR 105

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   +   ++S+K            +             R   +   A    A +I T H
Sbjct: 106 NEYGLPLIIMSYKQLYGWTMDEIVSAVGVRNNCTFCGVFRRRALDRGAVECGANIIATGH 165

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSFLLQRN 185
             DD  ETV +   R    +   L    D +   +  L  ++P      +DI  +     
Sbjct: 166 NADDMAETVLLNVLRGDLAR---LQRCTDIVTELEGCLPRTKPLKYVFEKDIVMYAHFNG 222

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212
           + +            R  VR +V+ ++
Sbjct: 223 LDYFSTECRYAPDSFRNYVRMYVKKLE 249


>gi|194863280|ref|XP_001970365.1| GG10584 [Drosophila erecta]
 gi|226711417|sp|B3N7L9|CTU1_DROER RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|190662232|gb|EDV59424.1| GG10584 [Drosophila erecta]
          Length = 343

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 17/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + VA SGG DS  L   L  +L++R    ++   +S+D  +     D +  V    
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNR 107

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              ++   ++S++               ++         R   +   AK +    I T H
Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +   L              I   +P      ++I  +   +
Sbjct: 168 NADDIAETVLMNVLRGDTAR---LRRCTSIRTGGGEDTIPRVKPLKYSYEKEIVMYAHYK 224

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R F++D++
Sbjct: 225 KLVYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|39945262|ref|XP_362168.1| hypothetical protein MGG_04613 [Magnaporthe oryzae 70-15]
 gi|145021450|gb|EDK05579.1| hypothetical protein MGG_04613 [Magnaporthe oryzae 70-15]
          Length = 412

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 17/213 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +  SGG DS  L   L ++ ++R    ++   +SVD  ++    D +  V
Sbjct: 46  NLFTPGERVAIGASGGKDSTVLASVLKTL-NERYKYGLELVLLSVDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V               +  + G        R   +   AK ++   +
Sbjct: 105 KRNAVQYDMPLKIVGYDELYGWTMDQVVETVGKKGNCTYCGIFRRQALDRGAKVLDIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +T H  DD  ETV M   R       +   +    ++ L D N+  S+P      ++I  
Sbjct: 165 VTGHNADDVAETVLMNLLRGDLARLSRSTNIMTGANSALSD-NVKRSKPLKYAYEKEIVL 223

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   + + +            R   R  +++++
Sbjct: 224 YAHHKKLDYFSTECLYSPEAFRGSARSLIKNLE 256


>gi|160889079|ref|ZP_02070082.1| hypothetical protein BACUNI_01500 [Bacteroides uniformis ATCC 8492]
 gi|270293809|ref|ZP_06200011.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156861546|gb|EDO54977.1| hypothetical protein BACUNI_01500 [Bacteroides uniformis ATCC 8492]
 gi|270275276|gb|EFA21136.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 249

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L          +    A+ V   +  +   +   V Y+ +
Sbjct: 31  GDKILIGLSGGKDSLALVELLARRARVYK-PRFSVVAVHVVMKN--IPYQSD--VDYLRE 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +   +   +    +  +          R   +   AK      I   H  DD L
Sbjct: 86  YVESWGVPFVLFETEFDATTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   S     ++   ++ I RP       D+      R 
Sbjct: 146 ETLLMNIT----YQGAFSSMPPRLVMKKFDMTIIRPMCLVHEADLMELAQVRG 194


>gi|326482259|gb|EGE06269.1| ATP-binding domain-containing protein 3 [Trichophyton equinum CBS
           127.97]
          Length = 427

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
            V    + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V  
Sbjct: 48  FVPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVKR 106

Query: 76  VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +   +VS                 + G        R   +   A  +N   ++T
Sbjct: 107 NAIQYEMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ETV M   R    + +  S    T     ++  S+P      ++I  +   +
Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAHHK 225

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R  ++D++
Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|315186040|gb|EFU19803.1| PP-loop domain protein [Spirochaeta thermophila DSM 6578]
          Length = 276

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYV 73
           L     +L+ +SGG DS+ + + L S+            A+ ++   +E   + +E   +
Sbjct: 38  LGEGDRVLLGISGGKDSLVMALIL-SLRRRWLPIHYHLEAVHLN--WQEYPISDEETDRL 94

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +     + +  + ++      +   Q      AR  R  L+  + K  +  ++   H  D
Sbjct: 95  AAYFDAIDVPFTQITTTMFPGHYDGQFNCYLCARN-RKRLLFTYMKEHDIPILALGHHLD 153

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET  +      A +G   + M     +     + RP        +R+ + +  +   
Sbjct: 154 DIVETTLINM----AMRGRLFTMMPVQPFFGGLFTLIRPLCEVPESQVRTAVEKLGLPVV 209

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           +      D   R+RV+  V  +       + K ++ L
Sbjct: 210 KPDCPYKDTNLRLRVKPLVEQLATLDPLAREKIYRSL 246


>gi|302500828|ref|XP_003012407.1| hypothetical protein ARB_01366 [Arthroderma benhamiae CBS 112371]
 gi|291175965|gb|EFE31767.1| hypothetical protein ARB_01366 [Arthroderma benhamiae CBS 112371]
          Length = 427

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
            V    + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V  
Sbjct: 48  FVPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVKR 106

Query: 76  VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +   +VS                 + G        R   +   A  +N   ++T
Sbjct: 107 NAIQYEMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ETV M   R    + +  S    T     ++  S+P      ++I  +   +
Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAHHK 225

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R  ++D++
Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|302655364|ref|XP_003019472.1| hypothetical protein TRV_06501 [Trichophyton verrucosum HKI 0517]
 gi|291183197|gb|EFE38827.1| hypothetical protein TRV_06501 [Trichophyton verrucosum HKI 0517]
          Length = 427

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
            V    + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V  
Sbjct: 48  FVPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVKR 106

Query: 76  VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +   +VS                 + G        R   +   A  +N   ++T
Sbjct: 107 NAVQYEMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ETV M   R    + +  S    T     ++  S+P      ++I  +   +
Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAHHK 225

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R  ++D++
Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|24651972|ref|NP_610451.1| CG8078 [Drosophila melanogaster]
 gi|122102795|sp|Q7JWW5|CTU1_DROME RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|7303947|gb|AAF58991.1| CG8078 [Drosophila melanogaster]
 gi|20976850|gb|AAM27500.1| LD03161p [Drosophila melanogaster]
 gi|220950426|gb|ACL87756.1| CG8078-PA [synthetic construct]
          Length = 343

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 17/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + VA SGG DS  L   L  +L++R    ++   +S+D  +     D +  V    
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNR 107

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              ++   ++S++               ++         R   +   AK +    I T H
Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +   L              I   +P      ++I  +   +
Sbjct: 168 NADDIAETVLMNVLRGDTAR---LRRCTSIRTGGGEDTIPRVKPLKYSYEKEIVMYAHYK 224

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R F++D++
Sbjct: 225 KLVYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|296817831|ref|XP_002849252.1| VEG136 protein [Arthroderma otae CBS 113480]
 gi|238839705|gb|EEQ29367.1| VEG136 protein [Arthroderma otae CBS 113480]
          Length = 420

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
            V    I +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V  
Sbjct: 48  FVPGERIAIGASGGKDSTVLASVLKTL-NERYNYGLNLVLLSIDEGIKGYRDDSLETVKR 106

Query: 76  VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +   +VS                 + G        R   +   A  +N   ++T
Sbjct: 107 NAVQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ETV M   R    + +  S    T     ++  S+P      ++I  +   +
Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIVTGSAASDIKRSKPLKYAYEKEIVLYAHYK 225

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R  ++D++
Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|195474928|ref|XP_002089738.1| GE22576 [Drosophila yakuba]
 gi|226711424|sp|B4P3W7|CTU1_DROYA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|194175839|gb|EDW89450.1| GE22576 [Drosophila yakuba]
          Length = 343

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 69/205 (33%), Gaps = 17/205 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA SGG DS  L   L  +L++R    ++   +S+D  +     D +  V       
Sbjct: 52  KVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNRDDY 110

Query: 81  RIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           ++   ++S++               ++         R   +   AK +    I T H  D
Sbjct: 111 QMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGHNAD 170

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRNIS 187
           D  ETV M   R    +   L              I   +P      ++I  +   + + 
Sbjct: 171 DIAETVLMNVLRGDTAR---LRRCTSIRTGGGEDTIPRVKPLKYSYEKEIVMYAHYKKLV 227

Query: 188 WCEDPSNTDDRFERVRVRRFVRDID 212
           +            R   R F++D++
Sbjct: 228 YFSTECVFAPNAYRGHARAFLKDLE 252


>gi|317479355|ref|ZP_07938489.1| PP-loop family protein [Bacteroides sp. 4_1_36]
 gi|316904429|gb|EFV26249.1| PP-loop family protein [Bacteroides sp. 4_1_36]
          Length = 234

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L          +    A+ V   +  +   +   V Y+ +
Sbjct: 31  GDKILIGLSGGKDSLALVELLARRARVYK-PRFSVVAVHVVMKN--IPYQSD--VDYLRE 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +   +   +    +  +          R   +   AK      I   H  DD L
Sbjct: 86  YVESWGVPFVLFETEFDATTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   S     ++   ++ I RP       D+      R 
Sbjct: 146 ETLLMNIT----YQGAFSSMPPRLVMKKFDMTIIRPMCLVHEADLMELAQVRG 194


>gi|257075864|ref|ZP_05570225.1| ATPase of the PP-loop superamily [Ferroplasma acidarmanus fer1]
          Length = 311

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 90/239 (37%), Gaps = 26/239 (10%)

Query: 2   FLSPIES-VRFFVRSLV----YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           F++ +E  V+  +R  V        I VA+SGG DS   L  LH +LS+R    ++ +A 
Sbjct: 26  FITYVEKRVKREIREQVDFGNKKTRISVAISGGKDSSATLYLLHKILSERR--NLELTAF 83

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREA 105
           +VD  +       +     +C  L I H+V+S+K +             +T   +     
Sbjct: 84  TVDEGIEGYRSTGLEKARKLCENLGIEHNVISYKENYGYSLDEIMKIDKKTISCSHCGPM 143

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R  L++  ++   +  +      DD  +++ M   +    +   ++    +   +  +  
Sbjct: 144 RRQLMNRISEYTESDYVALGINLDDYAQSILMNVAKGDVARYARMA--PHSYTREGLVPR 201

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE---RVRVRRFVRDIDLHALYLKMK 221
             P  +   +++  + +   I +  D S     +    R   R  +  ++      K  
Sbjct: 202 ILPLRKIPEKEVVLYAILNGIDF--DSS-WCPYYSMAQRNSFRDIIEKLEKETPGTKFA 257


>gi|84489152|ref|YP_447384.1| ATPase [Methanosphaera stadtmanae DSM 3091]
 gi|84372471|gb|ABC56741.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091]
          Length = 319

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 23/209 (11%)

Query: 2   FLSPIES--VRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F   IE   +R   +  +      +LV +SGG DS+ LL  L+ +        I   A++
Sbjct: 30  FRKSIEKQVLRTIKKEKLVTKGDKVLVGLSGGKDSVALLKILNILKEK---NIITLEAVT 86

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREA------- 105
           +D  +    ++ +R   +    L I H +VS+K+             A   +A       
Sbjct: 87  IDEGISGYREEGIRIAKETAKALDIKHHIVSFKDKYNFTIDKIMEAEAKCNDAQHACTYC 146

Query: 106 ---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
              R  + ++ A+ +NAT + T H  DD+ +++ M          + +     +      
Sbjct: 147 GVFRRQIFNQVARDVNATKLATGHNLDDETQSIVMNYLEGNVNNMVRIGYKTLSQDKRFT 206

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCED 191
             I +P  +   ++I  ++L+       D
Sbjct: 207 QKI-KPLRKIPEKEIGLYVLESGFEVHFD 234


>gi|254168818|ref|ZP_04875659.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
 gi|197622255|gb|EDY34829.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
          Length = 308

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 80/202 (39%), Gaps = 19/202 (9%)

Query: 2   FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           FL  I+  V+  +R          IL+AVSGG DSM  L  +H +        ++  A++
Sbjct: 26  FLEFIDRKVKREIREQAHFKKGDKILIAVSGGKDSMLTLYQMHKIFGKWR--DLELVAVT 83

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREAR 106
           VD  + +  K   +  +    +L I H V+++K               +          R
Sbjct: 84  VDEGIGDFRKSCAKVANTYAKKLGIKHEVITFKEYLGITTDDVARVDKELKPCTYCGVFR 143

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             +++ ++K I A  ++     DD  +++ M   R    +   L+         +   I 
Sbjct: 144 RKVLNMYSKEIGANYLILGLNLDDIAQSIIMNITRGDTARLARLAPHKKIREGFIPRII- 202

Query: 167 RPFLRCRREDIRSFLLQRNISW 188
            P  R R +++R ++   NI +
Sbjct: 203 -PLRRVREDEVRLYMNLANIPY 223


>gi|257438080|ref|ZP_05613835.1| ExsB family protein [Faecalibacterium prausnitzii A2-165]
 gi|257199411|gb|EEU97695.1| ExsB family protein [Faecalibacterium prausnitzii A2-165]
          Length = 266

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 30/219 (13%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKDEVRYV 73
               I+V VSGG DS+ L I L  +     F   +  A++     DH        +   +
Sbjct: 26  PGDKIMVGVSGGKDSVALTIGLAQLRRYLGF-DYEVVAVTLDPQFDHQ-----AVDYSPL 79

Query: 74  SDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           + + +R  + + V   +        + +    +     R   +   A+ +    +   H 
Sbjct: 80  AALFARYGVPYEVRRTEIGPIVFEYRQEKNPCSLCARLRRGALHTAAQELGCNKVALGHH 139

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET YM   R    +G        T L    L + RP L     ++R  + + +  
Sbjct: 140 LDDAVETFYMNLWR----EGRIGCFSPVTQLDRRGLTLIRPMLLATEHEVRCAVKEEDFP 195

Query: 188 WCEDPSNTDD--------RFERVRVR--RFVRDIDLHAL 216
             +     D          F R R R     R   LHAL
Sbjct: 196 IVKSRCPADGVTVREQTKDFVRERCRTDHAFRQKTLHAL 234


>gi|297526784|ref|YP_003668808.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255700|gb|ADI31909.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 331

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 114/295 (38%), Gaps = 39/295 (13%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + VR  +R         HI+VAVSGG DS+ LL  L+++   +     + +A+ +D  +R
Sbjct: 33  KKVRRTIRRYKMFSSKEHIVVAVSGGKDSLSLLHYLYNL--SKRVPGWRITALLIDEGIR 90

Query: 64  ETAK----DEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGL----MAAARE 104
                   D +R V    + L + + + S++               + GL     +    
Sbjct: 91  GYRDITKKDFLRVV----NELGVDYKIASFEEYFGYTLDEIVRIGREKGLPYLPCSYCGV 146

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            R  L+++ A+ +  T++ TAH  DD ++T  M    +  +K + L+ +   + +   + 
Sbjct: 147 FRRYLLNKVARELGGTVLATAHNLDDVVQTYVMNIINNSWDKILRLAPVTGPLDHPKFVR 206

Query: 165 ISRPFLRCRREDIRSFLLQRNI--SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
             +PF     ++   + +  N+   + E P      + R  +R  +R   L+ L  K   
Sbjct: 207 RVKPFYEILEKETTLYSILNNLYPKFVECP------YARFNIRWMIR-RQLNELEEKYPG 259

Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--QDILNIDSTLLFYLLRVSAAIC 275
            +   ++    +  ++ K+    +   I         +        L R    I 
Sbjct: 260 TKYSLLRSLLRIIDILSKHRDEIIHGEIKTCKVCGEPSAHEICRACLYRYELGIM 314


>gi|312220546|emb|CBY00487.1| hypothetical protein [Leptosphaeria maculans]
          Length = 534

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 71/225 (31%), Gaps = 23/225 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I + R F R       I +  SGG DS  L   L ++     +G +    +S+D  ++  
Sbjct: 42  ITTNRLFTR----GEKIAIGASGGKDSTVLASVLKTLNKRYDYG-LDLILLSIDEGIKGY 96

Query: 66  AKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHA 114
             D +  V     +  +  +++                  + G        R   +   A
Sbjct: 97  RDDSLETVKRNAEQYGMELTILGYEELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGA 156

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKG-------MGLSGMCDTILYDLNLWISR 167
             +    ++T H  DD  ETV M   R    +                    + N+  S+
Sbjct: 157 ARLGVRHVVTGHNADDVAETVLMNLLRGDLPRLSRTTSIITSTPSASSDPASNTNVRRSK 216

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           P      ++I  +   + + +            R   R  +++++
Sbjct: 217 PLKYAYEKEIVLYAHHKKLDYFSTECIYSPEAFRGSARALIKNLE 261


>gi|310778071|ref|YP_003966404.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926]
 gi|309747394|gb|ADO82056.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926]
          Length = 319

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 86/249 (34%), Gaps = 32/249 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +PI         +     I V VSGG DS+  + AL  +    +F   +   I +     
Sbjct: 88  NPIGKAMHKYNMIEAGDSIAVGVSGGKDSLTTINALVRIKKIVNF-DFEIIPIHIH---- 142

Query: 64  ETAKDEVRY--VSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAK 115
             + D   Y    D C ++ +   V            K +          R  ++    K
Sbjct: 143 -PSTDSSSYNKTEDYCKKMGLELQVFETDLQNLLFEEKKEKNPCFLCGRIRRGMLYRIMK 201

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             N   +   H  DD +ET  M        +G            D  + + RP      +
Sbjct: 202 EQNINKLALGHHKDDIIETFLMNVF----YQGNMNVMKPAYYSKDYGVMVIRPLSFVEEK 257

Query: 176 DIRSFLLQRNISW----CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
           +I  ++ + N+      C   +N + R  R+RV+  + D+         K+  ++R  + 
Sbjct: 258 NIIRYVRKTNLPILKSECAYETNENSR--RLRVKNIITDLS--------KENSEIRSVML 307

Query: 232 NAVAMLIPK 240
           N++  L+ +
Sbjct: 308 NSIKDLLEE 316


>gi|196012435|ref|XP_002116080.1| hypothetical protein TRIADDRAFT_30260 [Trichoplax adhaerens]
 gi|190581403|gb|EDV21480.1| hypothetical protein TRIADDRAFT_30260 [Trichoplax adhaerens]
          Length = 349

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 70/210 (33%), Gaps = 15/210 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + V  SGG DS  L   L  +L++R    I    +SVD  +     D +  V
Sbjct: 45  KLFQPGESVAVGASGGKDSTVLAYVLK-LLNERHNYGINLVLLSVDEGITGYRDDSLETV 103

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                + ++   +VS++                          R   +   A  + A  I
Sbjct: 104 KRNQQQYQLPLKIVSYEELYGWTMDAIVQKIGMKNNCTFCGVFRRQALDRGAMLVKADKI 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    +             +  L   +PF     ++I  +  
Sbjct: 164 VTGHNADDVAETVLMNVLRGDIARLR--RCTAIMTGTEGALPRCKPFKYTYEKEIVMYAY 221

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R +++D++
Sbjct: 222 FKKLDYFSTECVYSPNAYRGYARAYLKDLE 251


>gi|195120392|ref|XP_002004711.1| GI19452 [Drosophila mojavensis]
 gi|226711419|sp|B4KLL0|CTU1_DROMO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|193909779|gb|EDW08646.1| GI19452 [Drosophila mojavensis]
          Length = 343

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 17/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + VA SGG DS  L   L  +L++R    +    +S+D  +     D +  V    
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLDLVLLSIDEGITGYRDDSLETVKQNR 107

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              ++   ++S++               ++         R   +   AK +    I T H
Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +   L    D         I   +P      ++I  +   +
Sbjct: 168 NADDIAETVLMNILRGDTAR---LRRCTDIRTGGGEDSIPRVKPLKYSYEKEIVMYAHYK 224

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R F++D++
Sbjct: 225 KLVYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|29349966|ref|NP_813469.1| hypothetical protein BT_4558 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253569663|ref|ZP_04847072.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29341877|gb|AAO79663.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840044|gb|EES68126.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 248

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 13/176 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCLRETAKDEVR 71
           R +     IL+ +SGG DS+ L+  L    +     +    A+ V  +  +   +  E  
Sbjct: 26  RLIEEGDKILIGLSGGKDSLALVELLGK-RARIYKPRFSVIAVHVVMN-NIPYQSDTE-- 81

Query: 72  YVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           Y+   C    +            +  +          R   +   AK      I   H  
Sbjct: 82  YLKAYCDSFGVPFVQYETSFDPATDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHM 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           DD LET+ M        +G   +     ++   ++ I RP       D+       
Sbjct: 142 DDILETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCMVHEADLIELAALH 193


>gi|53712471|ref|YP_098463.1| hypothetical protein BF1179 [Bacteroides fragilis YCH46]
 gi|60680672|ref|YP_210816.1| hypothetical protein BF1146 [Bacteroides fragilis NCTC 9343]
 gi|253563497|ref|ZP_04840954.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52215336|dbj|BAD47929.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
 gi|60492106|emb|CAH06869.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
 gi|251947273|gb|EES87555.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 249

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 54/170 (31%), Gaps = 9/170 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +LV +SGG DS+ L+  L    S     +    A+ V         D   Y+ +   
Sbjct: 31  GDKVLVGLSGGKDSLALVELLGK-RSHIFKPRFSVVAVHVVMKNIPYQSDW-DYLREHAE 88

Query: 79  RLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +  +   V       ++  +          R   +   AK      I   H  DD LET+
Sbjct: 89  KNGVPLVVYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDILETL 148

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            M        +G   +     ++   ++ I RP       D+      R 
Sbjct: 149 LMNIT----YQGAFSTMPPRLVMNKFDMTIIRPMCLVHEADLLELAQIRG 194


>gi|324516377|gb|ADY46509.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Ascaris suum]
          Length = 408

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 19/199 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAIS 57
           ++ S  E++   +  +     +LV +SGG DS+ LL  LH        R   + +  AI+
Sbjct: 137 LYKSATEAIHS-LNMIQDGDRVLVCLSGGKDSLSLLHILHHYQQRAMLRRKNRFRLGAIT 195

Query: 58  VDHCLRETAKD-EVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALI 110
           VD      +     R + + C  L I +       +           + A     +   +
Sbjct: 196 VD----PGSTAYNPRPLIEYCRSLNIDYFYEEQNIIGQAARLSKCRSICAFCSRMKRGRL 251

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +  AK     ++   H  DD  E+  + + ++    G   +     I  D  L + RP +
Sbjct: 252 AAAAKLHGYNVLAMGHHLDDLAESFLIAAFQN----GNLSTMKAVYITRDGALRVIRPLI 307

Query: 171 RCRREDIRSFLLQRNISWC 189
             R + +R F     +   
Sbjct: 308 YVREKALREFAESNKLPII 326


>gi|195332699|ref|XP_002033031.1| GM20632 [Drosophila sechellia]
 gi|226711421|sp|B4HSL7|CTU1_DROSE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|194125001|gb|EDW47044.1| GM20632 [Drosophila sechellia]
          Length = 343

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 13/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + VA SGG DS  L   L  +L++R    ++   +S+D  +     D +  V    
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNR 107

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              ++   ++S++               ++         R   +   AK +    I T H
Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +    + +  T   + ++   +P      ++I  +   + +
Sbjct: 168 NADDIAETVLMNVLRGDTARLRRCTSI-RTGGGEDSIPRVKPLKYSYEKEIVMYAHYKKL 226

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R F++D++
Sbjct: 227 VYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|298384331|ref|ZP_06993891.1| PP-loop family protein [Bacteroides sp. 1_1_14]
 gi|298262610|gb|EFI05474.1| PP-loop family protein [Bacteroides sp. 1_1_14]
          Length = 248

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 55/176 (31%), Gaps = 13/176 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCLRETAKDEVR 71
           R +     IL+ +SGG DS+ L+  L    +     +    A+ V  +  +   +  E  
Sbjct: 26  RLIEEGDKILIGLSGGKDSLALVELLGK-RARIYKPRFSVIAVHVVMN-NIPYQSDTE-- 81

Query: 72  YVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           Y+   C    +            +  +          R   +   AK      I   H  
Sbjct: 82  YLKAYCESFGVPFVQYETSFDPATDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHM 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           DD LET+ M        +G   +     ++   ++ I RP       D+       
Sbjct: 142 DDILETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCMVHEADLVELAALH 193


>gi|302405961|ref|XP_003000817.1| ATP-binding domain-containing protein [Verticillium albo-atrum
           VaMs.102]
 gi|261360774|gb|EEY23202.1| ATP-binding domain-containing protein [Verticillium albo-atrum
           VaMs.102]
          Length = 399

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 21/220 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I S + F R       + +  SGG DS  L   L ++ ++R    +    +S+D  ++  
Sbjct: 42  ILSSKLFSR----GDRVAIGASGGKDSTVLASVLKTL-NERHDYGLDLILLSIDEGIKGY 96

Query: 66  AKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHA 114
             D +  V     +  +  +VV               +  + G        R   +   +
Sbjct: 97  RDDSLETVKRNAIQYDMPLTVVGYDELYGWTMDQVVGTVGKKGNCTYCGVFRRQALDRGS 156

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRC 172
           K +    ++T H  DD  ET+ M   R    +   LS     +  D +  + R  P    
Sbjct: 157 KMLGIRHLVTGHNADDIAETILMNLLRGDLPR---LSRSTSIMTGDDSSDVKRSKPLKYS 213

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             ++I  +   + + +            R   R  +++++
Sbjct: 214 YEKEIVLYAHHKKLDYFSTECIYSPEAFRGTARSLIKNLE 253


>gi|323455513|gb|EGB11381.1| hypothetical protein AURANDRAFT_4656 [Aureococcus anophagefferens]
          Length = 261

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            A +LVA SGG DS  LL  L      R F  I F  ++V H  ++    +V  +     
Sbjct: 28  GAKVLVACSGGKDSNALLYLLKQAQQRRLFRGIDFDVVAV-HLDQKQPGHDVEPLRAWLE 86

Query: 79  -RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + +   V       V    +K      +     R  ++  HA+   A ++   H  DD
Sbjct: 87  DDVGVDFQVIEEDTYSVVVDKTKAGKSYCSLCSRLRRGILYTHAERRGAGVLALGHHRDD 146

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            LET+ +    +       L  M    +    + + RP +     D+ ++   
Sbjct: 147 ALETLLLNMVHNGQ-----LKSMPARYVASRGVDVVRPLMYAAEADLLAYADA 194


>gi|302327683|gb|ADL26884.1| PP-loop family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 255

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 77/216 (35%), Gaps = 16/216 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVC 77
              +L+A SGG DS  LL+ L + L      K + +AI +     + A      ++  + 
Sbjct: 41  GDRVLIATSGGKDSSVLLMELAARLGKFG-PKCELAAIHI---QSDFADKAPREFLQRMA 96

Query: 78  SRL-RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               ++        V  +  + +          R   + + A   N   I   H  DD +
Sbjct: 97  EEYPQVPFYFKDVAVEARLKEGRKLNCYWCSTQRRTELIKFASENNFNKIALGHHMDDIV 156

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCED 191
           ET+ M        KG   SGM   + Y+     I RP   C   +I ++    +I     
Sbjct: 157 ETLLMNML----YKGE-FSGMPPMVPYEKYPCSIIRPLCYCEESEIIAYAEDADIRKFTC 211

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
                    R  +R  ++ +   +  LK   F+ +R
Sbjct: 212 TCEFSKASHRKTIREEIKSLTKGSSTLKANLFESMR 247


>gi|261415733|ref|YP_003249416.1| PP-loop domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372189|gb|ACX74934.1| PP-loop domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 253

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 77/216 (35%), Gaps = 16/216 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVC 77
              +L+A SGG DS  LL+ L + L      K + +AI +     + A      ++  + 
Sbjct: 39  GDRVLIATSGGKDSSVLLMELAARLGKFG-PKCELAAIHI---QSDFADKAPREFLQRMA 94

Query: 78  SRL-RIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               ++        V  +  + +          R   + + A   N   I   H  DD +
Sbjct: 95  EEYPQVPFYFKDVAVEARLKEGRKLNCYWCSTQRRTELIKFASENNFNKIALGHHMDDIV 154

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCED 191
           ET+ M        KG   SGM   + Y+     I RP   C   +I ++    +I     
Sbjct: 155 ETLLMNML----YKGE-FSGMPPMVPYEKYPCSIIRPLCYCEESEIIAYAEDADIRKFTC 209

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
                    R  +R  ++ +   +  LK   F+ +R
Sbjct: 210 TCEFSKASHRKTIREEIKSLTKGSSTLKANLFESMR 245


>gi|195455591|ref|XP_002074786.1| GK22963 [Drosophila willistoni]
 gi|226711423|sp|B4NN33|CTU1_DROWI RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|194170871|gb|EDW85772.1| GK22963 [Drosophila willistoni]
          Length = 343

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 72/212 (33%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   I VA SGG DS  L   L  +L+++    +    +S+D  +     D +  V
Sbjct: 45  QLFQPGQKIAVAASGGKDSTVLAHVLK-LLNEKHNYGLDLVLLSIDEGISGYRDDSLETV 103

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                  +++  ++S++               ++         R   +   AK +    I
Sbjct: 104 KQNRDDYQMSLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLQVDSI 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSF 180
            T H  DD  ETV M   R    +   L    D         I   +P      +DI  +
Sbjct: 164 ATGHNADDIAETVLMNILRGDTAR---LRRCTDIRTGGGEDSIPRVKPLKYSYEKDIVMY 220

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R F++D++
Sbjct: 221 AHYKKLVYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|302920147|ref|XP_003053010.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256733950|gb|EEU47297.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 388

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 75/220 (34%), Gaps = 21/220 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I S + F R       + +  SGG DS  L   + ++ ++R    +    +SVD  ++  
Sbjct: 42  ITSSQLFFR----GERVAIGASGGKDSTVLASVMKTL-NERHDYGLDLVLLSVDEGIKGY 96

Query: 66  AKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHA 114
             D +  V     +  +   +V               +  + G        R   +   A
Sbjct: 97  RDDSLETVKRNAVQYDMPLEIVGYGELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGA 156

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRC 172
           K +    ++T H  DD  ETV M   R    +   L+     +  D N  + R  P    
Sbjct: 157 KKLAIKHVVTGHNADDIAETVLMNLLRGDLPR---LARSTSIVTGDSNSDVKRSKPLKYA 213

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             ++I  +   + + +            R   R  +++++
Sbjct: 214 YEKEIVLYAHHKKLDYFSTECIYSPEAFRGTARGLIKNLE 253


>gi|313621001|gb|EFR92131.1| bifunctional protein TilS/hprT [Listeria innocua FSL S4-378]
          Length = 125

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LVAVSGG DS  LL  L    S     K   +   ++H LRE A+ E   V   C
Sbjct: 20  SDDKLLVAVSGGPDSFALLHFL---WSANLVPKEAIAVAHLNHHLRENAEKEQLAVQTFC 76

Query: 78  SRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               I   +    V  +  K Q G+   AR  RY    +     N   +
Sbjct: 77  EERDIPFFIEEVDVKKRAEKLQKGIEETARIVRYDFFEKVMAENNINKL 125


>gi|330921640|ref|XP_003299506.1| hypothetical protein PTT_10510 [Pyrenophora teres f. teres 0-1]
 gi|311326790|gb|EFQ92397.1| hypothetical protein PTT_10510 [Pyrenophora teres f. teres 0-1]
          Length = 440

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 68/215 (31%), Gaps = 19/215 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V  
Sbjct: 48  FQRGEKVAIGASGGKDSTVLASVLKTL-NERYDYGLDLILLSIDEGIKGYRDDSLETVKR 106

Query: 76  VCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +  +++                  + G        R   +   A  +    ++T
Sbjct: 107 NAEQYGMELTILGYDELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGVRHVVT 166

Query: 125 AHTFDDQLETVYMRSQRDYAEKG-------MGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            H  DD  ETV M   R    +                    + N+  S+P      ++I
Sbjct: 167 GHNADDVAETVLMNLLRGDLPRLSRTTSIITSTPSASANPASNTNIKRSKPLKYAYEKEI 226

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +   +N+ +            R   R  +++++
Sbjct: 227 VLYAHHKNLDYFSTECIYSPEAFRGSARALIKNLE 261


>gi|189192725|ref|XP_001932701.1| hypothetical protein PTRG_02368 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187978265|gb|EDU44891.1| hypothetical protein PTRG_02368 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 440

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 68/215 (31%), Gaps = 19/215 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V  
Sbjct: 48  FQRGEKVAIGASGGKDSTVLASVLKTL-NERYDYGLDLILLSIDEGIKGYRDDSLETVKR 106

Query: 76  VCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +  +++                  + G        R   +   A  +    ++T
Sbjct: 107 NAEQYGMELTILGYDELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGVRHVVT 166

Query: 125 AHTFDDQLETVYMRSQRDYAEKG-------MGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            H  DD  ETV M   R    +                    + N+  S+P      ++I
Sbjct: 167 GHNADDVAETVLMNLLRGDLPRLSRTTSIVTSTPSASANPASNTNIKRSKPLKYAYEKEI 226

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +   +N+ +            R   R  +++++
Sbjct: 227 VLYAHHKNLDYFSTECIYSPEAFRGSARALIKNLE 261


>gi|318077182|ref|ZP_07984514.1| tRNA(Ile)-lysidine synthase [Streptomyces sp. SA3_actF]
          Length = 259

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 84/218 (38%), Gaps = 13/218 (5%)

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A+   A  I+  HT DDQ ETV +   R    +   LSGM +  +        RPF
Sbjct: 45  LDAVAEKHGAAAILLGHTRDDQAETVLLGLARGSGTR--SLSGMAE--ISGPGGRYRRPF 100

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           LR  R+  R   + +++   +DP NTD  + R R+R         +L   + +      +
Sbjct: 101 LRIDRQTARKACMVQSLPVWDDPHNTDPAYTRSRLRHEGLPALEKSLGKGVVEALARTAQ 160

Query: 230 VNNAVAMLIPKYL-----TVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC---GGQISL 281
           ++   A  +  +      TV           +  + + +   +LR +       GG +  
Sbjct: 161 LSRDDADALDAWAARAAGTVRDEHGALDCAGLYALPAAVRRRVLRAALLDAGAPGGALFA 220

Query: 282 PGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319
                ++R++   + G+R     G+V   R    L I 
Sbjct: 221 AHIEEVDRLITAWR-GQRALNLPGKVEARRLGGRLVIR 257


>gi|219851846|ref|YP_002466278.1| PP-loop domain protein [Methanosphaerula palustris E1-9c]
 gi|219546105|gb|ACL16555.1| PP-loop domain protein [Methanosphaerula palustris E1-9c]
          Length = 304

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/177 (22%), Positives = 72/177 (40%), Gaps = 21/177 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     I VA+SGG DS  LL  ++ +L  R+    +  AI+VD  +R+   + +     
Sbjct: 44  LADNERIAVALSGGKDSTVLLWLMNMLLGKRAAD--RLVAITVDEGIRDYRDETLAAARR 101

Query: 76  VCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +  RL I H +VS+++             +    +     R   + + A    A ++ T 
Sbjct: 102 LTHRLGIRHIIVSFQDLFGADLDSLLIGNRERACSVCGVYRRQALQQTAVEAGAGVLATG 161

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSF 180
           H  DD+ ++V M   R    +  G        L +   +I   +P  R   +++  +
Sbjct: 162 HCLDDEAQSVLMNYLRGDLTRIAG-------TLPEGTGYIPRIKPLGRVSEKEVVVY 211


>gi|322711128|gb|EFZ02702.1| VEG136 protein [Metarhizium anisopliae ARSEF 23]
          Length = 393

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 21/228 (9%)

Query: 2   FLSPIE-SVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           FLS  E  V   + S  L +P   + +  SGG DS  L   L ++ ++R    +    +S
Sbjct: 29  FLSVFEDEVHHTITSSKLFFPGEKVAIGASGGKDSTVLASVLKTL-NERHNYGLDLVLLS 87

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREAR 106
           +D  ++    D +  V     +  +   +V               +  + G        R
Sbjct: 88  IDEGIKGYRDDSLETVKRNAVQYDMPLKIVGYDELFGWTMDQVVETIGKKGNCTYCGVFR 147

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
              +   A  +N   ++T H  DD  ETV M   R    +   LS     +    +  I 
Sbjct: 148 RQALDRGANLLNIKHVVTGHNADDIAETVLMNLLRGDLPR---LSRSTSIVTGSASTGIQ 204

Query: 167 R--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           R  P      ++I  +   + + +            R   R  ++ ++
Sbjct: 205 RSKPLKYAYEKEIVLYAHHKRLDYFSTECIYSPEAFRGTARTLIKSLE 252


>gi|46128203|ref|XP_388655.1| hypothetical protein FG08479.1 [Gibberella zeae PH-1]
          Length = 392

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 21/220 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I S + F R       + +  SGG DS  L   + ++ ++R    +    +SVD  ++  
Sbjct: 42  ITSSKLFFR----GERVAIGASGGKDSTVLASVMKTL-NERHDYGLDLVLLSVDEGIKGY 96

Query: 66  AKDEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHA 114
             D +  V     +  +   +V               +  + G        R   +   A
Sbjct: 97  RDDSLETVKRNAVQYDMPLEIVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGA 156

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRC 172
           K +    ++T H  DD  ETV M   R    +   LS     +  + +  + R  P    
Sbjct: 157 KKLAIQHVITGHNADDVAETVLMNLLRGDMPR---LSRSTSIVTGNSSSEVMRSKPLKYA 213

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             ++I  +   + + +            R   R  +++++
Sbjct: 214 YEKEIVLYAHHKKLDYFSTECIYSPEAFRGTARGLIKNLE 253


>gi|253681020|ref|ZP_04861823.1| PP-loop family protein [Clostridium botulinum D str. 1873]
 gi|253562869|gb|EES92315.1| PP-loop family protein [Clostridium botulinum D str. 1873]
          Length = 245

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 91/238 (38%), Gaps = 27/238 (11%)

Query: 1   MFLSPIESVRFFVR---------SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGK 50
           M +   E  R F+R         +++ P   + V +SGG DS+ LL AL  ++   S   
Sbjct: 1   MIIFKKEYNRLFLRYLRKSIEEYNMIKPGDKVAVGLSGGKDSIFLLFAL-RLIQMTSIKN 59

Query: 51  IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAARE 104
            +   I++D          +  + + C +  I   +          N + +    +   +
Sbjct: 60  FELIGINIDLGFETN----LAPLENFCIKNNIPIIIEKTNIADVVFNERKEKKPCSLCSK 115

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            R   +   AK  N   I   H  DD +ET++M   +   + G     +      D  + 
Sbjct: 116 LRKGALIRVAKANNINKIALGHNSDDVIETLFMNVLK-VGKLGTFHPNINFN---DKGIN 171

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           I RP +  R + I+   ++ N+   +     D +  R  +++ +  I L  +Y   ++
Sbjct: 172 IIRPLIYLREDLIQKLTIKYNLPVIKSSCPKDKKTTREDMKQLL--IKLENIYPDAQR 227


>gi|265762633|ref|ZP_06091201.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_16]
 gi|263255241|gb|EEZ26587.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_16]
          Length = 249

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 9/170 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +LV +SGG DS+ L+  L    S     +    A+ V         D   Y+ +   
Sbjct: 31  GDKVLVGLSGGKDSLALVELLGK-RSHIFKPRFSVVAVHVVMKNIPYQSDW-DYLREHAE 88

Query: 79  RLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +  +   V       ++  +          R   +   AK      I   H  DD LET+
Sbjct: 89  KNGVPLVVYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDILETL 148

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            M        +G   +      +   ++ I RP       D+      R 
Sbjct: 149 LMNIT----YQGAFSTMPPRLAMNKFDMTIIRPMCLVHEADLLELAQIRG 194


>gi|227834068|ref|YP_002835775.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975]
 gi|227455084|gb|ACP33837.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975]
          Length = 317

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 23/205 (11%)

Query: 8   SVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R   R++V   P  I V +SGG+DS        ++ +         +A+ VDH L+E 
Sbjct: 17  ACRVAARAVVGEQPRAIAVGLSGGADS-------LALTAALLAEGHDVTALCVDHGLQEG 69

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +  + R  ++    L     V+     K  +    A         + +        +  A
Sbjct: 70  SAAQARRAAEQARALGAGAEVLRVDVGKQGSVEAEAR-------AARYRAFAPWGEVAVA 122

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ET+ +   R        ++GM +    +  + + RP L  RR    +   +  
Sbjct: 123 HTADDQAETLLLSVLRGK------VAGMRERSAVE-GVHVLRPLLSVRRAQTETACAELG 175

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD 210
           +   +DP N D  F RV +RR +  
Sbjct: 176 LEVWQDPQNQDASFRRVALRREILP 200


>gi|327299008|ref|XP_003234197.1| PP-loop ATPase superfamily protein [Trichophyton rubrum CBS 118892]
 gi|326463091|gb|EGD88544.1| PP-loop ATPase superfamily protein [Trichophyton rubrum CBS 118892]
          Length = 427

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
            V    + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V  
Sbjct: 48  FVPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETVKR 106

Query: 76  VCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +   +VS                 + G        R   +   A  +N   ++T
Sbjct: 107 NAVQYEMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVT 166

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ETV M   R    + +  S    T     ++  S+P      ++I  +   +
Sbjct: 167 GHNADDVAETVMMNLLRGDLPR-LARSTSIITGSAASDIKRSKPLKYAYEKEIVLYAYHK 225

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R  ++D++
Sbjct: 226 KLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|262183446|ref|ZP_06042867.1| cell cycle protein MesJ [Corynebacterium aurimucosum ATCC 700975]
          Length = 324

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/205 (22%), Positives = 81/205 (39%), Gaps = 23/205 (11%)

Query: 8   SVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           + R   R++V   P  I V +SGG+DS        ++ +         +A+ VDH L+E 
Sbjct: 24  ACRVAARAVVGEQPRAIAVGLSGGADS-------LALTAALLAEGHDVTALCVDHGLQEG 76

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +  + R  ++    L     V+     K  +    A         + +        +  A
Sbjct: 77  SAAQARRAAEQARALGAGAEVLRVDVGKQGSVEAEA-------RAARYRAFAPWGEVAVA 129

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DDQ ET+ +   R        ++GM +    +  + + RP L  RR    +   +  
Sbjct: 130 HTADDQAETLLLSVLRGK------VAGMRERSAVE-GVHVLRPLLSVRRAQTETACAELG 182

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRD 210
           +   +DP N D  F RV +RR +  
Sbjct: 183 LEVWQDPQNQDASFRRVALRREILP 207


>gi|322820903|gb|EFZ27387.1| hypothetical protein TCSYLVIO_6411 [Trypanosoma cruzi]
          Length = 329

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 16/203 (7%)

Query: 23  LVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +VA   SGG DS  L+  +  +L++R    ++   +S+D  +     D ++ V    +  
Sbjct: 54  VVACGASGGKDSTVLMHLMK-LLNERHGYDVQILLLSIDEGITGYRDDSLKTVHRNSAEY 112

Query: 81  RIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +   V+S+K                          R   +   A  + AT I+T H  D
Sbjct: 113 GLPLRVISYKELYGWTMDEVVRLSGLRNSCTFCGVFRRQALDRGAALLGATKIVTGHNAD 172

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  ET+ M   R    +             D  +   +P      ++I  +   + + + 
Sbjct: 173 DLAETILMNILRADLPRLS--RCTSAITAGDGLIPRVKPLKYAYEKEIVLYAHLKKLDYF 230

Query: 190 EDPSNTDDRFERVRVRRFVRDID 212
               +      R   R  +++++
Sbjct: 231 TTECSYSREAFRSEARTLLKEME 253


>gi|255717669|ref|XP_002555115.1| KLTH0G01694p [Lachancea thermotolerans]
 gi|238936499|emb|CAR24678.1| KLTH0G01694p [Lachancea thermotolerans]
          Length = 373

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 19/209 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           Y   + V  SGG DS  L   L  +L++R    I+   +S+D  +     D +  V    
Sbjct: 65  YGEKVAVGASGGKDSTVLAYVLK-LLNERYNYGIQIVLLSIDEGIVGYRDDSLATVKRNK 123

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126
            +  +   +VS++     T     A              R   +   A  +    ++T H
Sbjct: 124 EQYGLPLEIVSYRELYDWTMDEIVACAGVRNSCTYCGVFRRQALDRGAAKLGIRHVVTGH 183

Query: 127 TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             DD  ETV M   R      EK   +           +    +PF    +++I  +   
Sbjct: 184 NADDMAETVLMNILRGDVARLEKSTAIMTQSSGSPIKRS----KPFKYSYQKEIVLYAHY 239

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212
           + + +            R   R  +++++
Sbjct: 240 KKLDYFSTECTYAPEAFRGTARELMKNLE 268


>gi|218129888|ref|ZP_03458692.1| hypothetical protein BACEGG_01470 [Bacteroides eggerthii DSM 20697]
 gi|317476891|ref|ZP_07936134.1| hypothetical protein HMPREF1016_03118 [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987998|gb|EEC54323.1| hypothetical protein BACEGG_01470 [Bacteroides eggerthii DSM 20697]
 gi|316907066|gb|EFV28777.1| hypothetical protein HMPREF1016_03118 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 251

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 76/227 (33%), Gaps = 30/227 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    S     +    A+ V   +  +   +   V Y+ +
Sbjct: 34  GDRILIGLSGGKDSLALVELLAR-RSRILKPRFSVIAVHVVMKN--IPYQSD--VDYLRN 88

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 I   +   +   ++  +          R   +   AK      I   H  DD L
Sbjct: 89  YTESCGIPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTVAKEQKCNKIALGHHMDDIL 148

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR------EDIRSFLLQRNI 186
           ET+ M        +G   S     ++   ++ I RP             +IR++  Q   
Sbjct: 149 ETLLMNIT----YQGTFSSMPPRLVMKKFDMTIIRPMCLVHEADLMELAEIRAYRKQVKN 204

Query: 187 SWCEDPSNTDDRFERV---RVRRFVRDIDLHALYLKMKKFQDLRVKV 230
              E  S       R    R+   + +++  A Y       +++ ++
Sbjct: 205 CPYESQS------SRSAMKRILHQLEEMNPEARYSLWGSMSNVQEEL 245


>gi|291528152|emb|CBK93738.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale M104/1]
          Length = 377

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 24/229 (10%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM L+  L   L   +        + +D    E      R+V
Sbjct: 132 ELVKPGDKIAVCISGGKDSM-LMAKLFQELKHHNKFDFDVKFLVMDPGYNEAN----RHV 186

Query: 74  -SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             + C  L I  ++            +          R   +   AK +    I   H +
Sbjct: 187 IEENCRNLGIPATIFESDIFDAVYDIEKSPCYLCARMRRGHLYAFAKELGCNKIALGHHY 246

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET+ M        + M       +  ++  + + RP    R +DI+++     + +
Sbjct: 247 DDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDDIKAWRDYNGLHF 303

Query: 189 CEDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +             N ++R +RV +++ + ++     +++   F+ + 
Sbjct: 304 IQCACKFTDTCTTCNNEENRSKRVEIKQLIANLKKVNPFVEANIFKSVE 352


>gi|238923740|ref|YP_002937256.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Eubacterium rectale ATCC 33656]
 gi|238875415|gb|ACR75122.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale ATCC 33656]
 gi|291525722|emb|CBK91309.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Eubacterium rectale DSM 17629]
          Length = 377

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 24/229 (10%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM L+  L   L   +        + +D    E      R+V
Sbjct: 132 ELVKPGDKIAVCISGGKDSM-LMAKLFQELKHHNKFDFDVKFLVMDPGYNEAN----RHV 186

Query: 74  -SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             + C  L I  ++            +          R   +   AK +    I   H +
Sbjct: 187 IEENCRNLGIPATIFESDIFDAVYDIEKSPCYLCARMRRGHLYAFAKELGCNKIALGHHY 246

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET+ M        + M       +  ++  + + RP    R +DI+++     + +
Sbjct: 247 DDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDDIKAWRDYNGLHF 303

Query: 189 CEDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +             N ++R +RV +++ + ++     +++   F+ + 
Sbjct: 304 IQCACKFTDTCTTCNNEENRSKRVEIKQLIANLKKVNPFVEANIFKSVE 352


>gi|77918285|ref|YP_356100.1| C32 tRNA thiolase [Pelobacter carbinolicus DSM 2380]
 gi|123574777|sp|Q3A6S7|TTCA_PELCD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|77544368|gb|ABA87930.1| ATPase, PP-loop superfamily [Pelobacter carbinolicus DSM 2380]
          Length = 259

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 75/207 (36%), Gaps = 11/207 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC 77
              I VAVSGG DS  LL  L S+   R+  + +  A++VD        D    ++ +  
Sbjct: 29  GDRIAVAVSGGKDSWTLLHILDSLRR-RAPIRYELIAVNVDPGFPGYRTDIMEAHLREYG 87

Query: 78  SRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              R+     + +  +  +P +   A     R  ++   A  +    +   H  DD +ET
Sbjct: 88  FANRMERTDCATIIKEKLRPGSSFCAFCARLRRGVLYSVATELGCNKLALGHHLDDFVET 147

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +         G   +     +  +    + RP +     D+ +F     +        
Sbjct: 148 LLLNQF----YVGTLAAMSPKLLADNGQHTVIRPMVYVEESDVAAFAEANGLPAIPCGCP 203

Query: 195 TDDRFERVRVR--RFVRDIDLHALYLK 219
            + R ++ R R  R V  +     +L+
Sbjct: 204 EETRSDQNRQRMKRLVSQLAEDIPHLR 230


>gi|320169122|gb|EFW46021.1| ATP-binding domain-containing protein 3 [Capsaspora owczarzaki ATCC
           30864]
          Length = 400

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 22/214 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +  V    + +  SGG DS  L   L  +    ++G I+   +SVD  +     D +  V
Sbjct: 46  KLFVPGDRVAIGASGGKDSTVLAYVLKRLNDMYNYG-IELFLLSVDEGITGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                   I   +VS++                          R   +   A  + A  I
Sbjct: 105 KRNEQAYGIPLKIVSYQELYGWTMDAIVKEVGLKNNCTFCGVFRRQALDRGAALLGANKI 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIR 178
           +T H  DD  ETV+M   R  A +       ++G  DT+         +PF     ++I 
Sbjct: 165 VTGHNADDMAETVFMNILRGDAPRLQRCTNVVTGSSDTLPR------CKPFKFTYEKEIV 218

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            +   + + +         +  R   R F++D++
Sbjct: 219 LYAYFQKLDYFSTECVYSPQAFRGHARAFLKDLE 252


>gi|118602588|ref|YP_903803.1| PP-loop domain-containing protein [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567527|gb|ABL02332.1| PP-loop domain protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 263

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 82/248 (33%), Gaps = 18/248 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + + P+       + +     IL+AVSGG DS+ L   L   L+       +   +++D 
Sbjct: 25  LLVKPVGRAISDFKMIKERDKILLAVSGGKDSLSLFHILRHFLASAPIS-FELGVVTID- 82

Query: 61  CLRETAKD-EVRYVSDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEH 113
                    E + +     +  + +   S+      + S       +     +  L+ + 
Sbjct: 83  ---PQVDGFEPQALKSFFKKFDVPYFFESFPIMKQAEKSMKGNSYCSFCARIKRGLMYQV 139

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+     ++      DD  E++ M    +   + M    + D      +L I RP    R
Sbjct: 140 ARREGYNVLALGQHLDDLAESLIMSICHNGKIQTMKAHYIND----AKDLRIIRPLAYVR 195

Query: 174 REDIRSFLLQRNISWCEDPSNT--DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
              + +F     +   +D          ERV  + ++   +     L       ++  +N
Sbjct: 196 ERQLANFAKTICLPVIKDSCPACYQMPTERVHFKHWLLTEEKRTPNLYKNLLSAMKPMLN 255

Query: 232 NAVAMLIP 239
            A   L  
Sbjct: 256 EAKECLND 263


>gi|294881990|ref|XP_002769552.1| hypothetical protein Pmar_PMAR006592 [Perkinsus marinus ATCC 50983]
 gi|239873104|gb|EER02270.1| hypothetical protein Pmar_PMAR006592 [Perkinsus marinus ATCC 50983]
          Length = 936

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 78/210 (37%), Gaps = 19/210 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +VR F + +     ILV +SGG DS+ +L  L ++   RS  K    A +VD    E + 
Sbjct: 658 AVRDF-QMINEGDKILVGLSGGKDSLTMLHLLLAM-RKRSPVKFTVGAATVDPQTPEYS- 714

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSK--------PQTGLMAAAREARYALISEHAKTINA 119
                +      L + +  +S    +         +  L +     +  ++    +    
Sbjct: 715 --PEPLKRYMEALGVEYHFLSKPLIEMAKNSLDPKKPSLCSFCARMKRGMLYSCMREFGY 772

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +      DD  E+  M +  +   +    +   +  +   ++ + RP + CR + +  
Sbjct: 773 TSLALGQHLDDLAESFVMSAFHNGTLR----TMKANYFVQQGDIRVIRPLVYCREKQLAE 828

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
           F  + ++    D  N    F   + R  V+
Sbjct: 829 FATENSLPVISD--NCPACFATPKERHRVK 856


>gi|298504242|gb|ADI82965.1| tRNA (2-thio-C32)-thioltransferase [Geobacter sulfurreducens KN400]
          Length = 257

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 15/216 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75
              I VAVSGG DS  LL  L  +   R+  K +  A+++D      R  +     Y+ +
Sbjct: 29  GDRIAVAVSGGKDSYTLLHILEGLRR-RAPVKYELVAVTIDSGYPGFR--SDVIASYLRE 85

Query: 76  VCSRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +    H  +  +  +P +   +     +  ++   A+ +    +   H  DD +
Sbjct: 86  QGFAHHLETTDHYDIIREKRRPGSSYCSICARLKRGVLYTLAQKLGCNKLALGHHLDDFV 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +         G   +     +  +    + RP +     +I  F  +         
Sbjct: 146 ETLLLNQF----FVGTLKAMAPRMLADNGETTVIRPLVYVEEREIIPFARENRFPVVCCS 201

Query: 193 SNTDDRFE--RVRVRRFVRDIDLHALYLKMKKFQDL 226
                  +  R R+++ + +++     +K    + L
Sbjct: 202 CPVCGTADLQRRRMKKLLTELEKENPAVKRSLLRAL 237


>gi|145591717|ref|YP_001153719.1| PP-loop domain-containing protein [Pyrobaculum arsenaticum DSM
           13514]
 gi|145283485|gb|ABP51067.1| PP-loop domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 332

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 29/222 (13%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
              +E++R   R +V   ++ VAVSGG DS+ LL  L S         +K  A +V+   
Sbjct: 38  RKVLETIRR-ERLIVPGDYVAVAVSGGKDSLVLLHILGSFKERGLLRDVKMEAFTVNEGH 96

Query: 62  -----LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA----------- 105
                 R + +D   YV ++ +R  I ++V  +K+    T    + R A           
Sbjct: 97  PYSCFYRMSRRD---YVRELAARFGIEYNVYHFKDFFGVTAQELSERLAKAGHEVHMCTI 153

Query: 106 ----RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
               R  L++   +    T I TAH  DD+ +TV M        +     G+ +      
Sbjct: 154 DGVLRRRLMNVVGRRRGWTKIATAHNLDDEAQTVLMNVLMGNLSR-FAYYGVYEDAEEKD 212

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSN---TDDRFE 200
            +   +P    R E++  +     I   E        + R++
Sbjct: 213 LIPRIKPMKYIREEEVALYAYYHGIPLMELECPYVVANPRYD 254


>gi|326422516|gb|EGD71912.1| PP-loop domain protein [Candidatus Parvarchaeum acidophilus
           ARMAN-5_'5-way FS']
          Length = 301

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 14/180 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + VA SGG DS+ LL  L       +    +  +I++D  ++      +  +   C
Sbjct: 44  KGEKVAVANSGGKDSLSLLYILAKYFKKNN----EIVSITIDEGIKGYRDKTIEIMKRYC 99

Query: 78  SRLRIAHSVVSWKNSKPQTG----------LMAAAREARYALISEHAKTINATLIMTAHT 127
               I + + S+K+   +T             AA    R  LI+  AK   A  + TAH 
Sbjct: 100 DEYGIKYKIYSYKDLTGKTMDYIASLKKGIPCAACGVLRRYLINYAAKDNKADKLATAHN 159

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD+ E V M   ++  EK   L      +  +  +   +PF+    ++   + +   I 
Sbjct: 160 LDDEAENVIMNLVQNDVEKMTRLGAYSGVVKEEEFIPRIKPFIFLGEKETMLYSMLNGID 219


>gi|242802619|ref|XP_002484007.1| PP-loop ATPase superfamily protein, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218717352|gb|EED16773.1| PP-loop ATPase superfamily protein, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 478

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 19/209 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I +  SGG DS  L   L ++     +G +    +S+D  ++    D +  V    
Sbjct: 50  RGERIAIGASGGKDSTVLASVLKTLNVRYDYG-LDLVLLSIDEGIKGYRDDSLETVKRNA 108

Query: 78  SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   +V                  + G        R   +   A  +    I+T H
Sbjct: 109 KQYDMPLEIVGYDELYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAARLGIKHIVTGH 168

Query: 127 TFDDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             DD  ETV M   R       +G  +    D+     ++  S+P      ++I  +   
Sbjct: 169 NADDVAETVMMNLLRGDLPRLSRGTSIVTGQDS----TDMKRSKPLKYAYEKEIVLYAHH 224

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212
           + + +            R   R  ++D++
Sbjct: 225 KKLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|321462932|gb|EFX73952.1| hypothetical protein DAPPUDRAFT_200348 [Daphnia pulex]
          Length = 341

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 70/210 (33%), Gaps = 15/210 (7%)

Query: 15  SLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            +  P   + +  SGG DS  L   L  +    ++G +K   +S+D  +     D +  V
Sbjct: 45  KMFQPGQLVAIGASGGKDSTVLAYVLKHLNEKYNYG-LKLVLLSIDEGITGYRDDSLESV 103

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                   I  +V+S+K+              +          R   +   A  +   +I
Sbjct: 104 KRNQEEYNIPLTVLSYKDLYGWTMDDIVKQVGRKNNCTFCGVFRRQALDRGAVLLKCDII 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD  ET+ M   R    +             D +L   +PF     ++I  +  
Sbjct: 164 ATGHNADDVAETILMNLLRGDIARLQ--RCTFHITGSDGSLPRVKPFKYAYEKEIVLYAY 221

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R  V+D++
Sbjct: 222 FKKLDYFATECVYAPDAYRGHARALVKDLE 251


>gi|307354722|ref|YP_003895773.1| phosphoadenosine phosphosulfate reductase [Methanoplanus
           petrolearius DSM 11571]
 gi|307157955|gb|ADN37335.1| phosphoadenosine phosphosulfate reductase [Methanoplanus
           petrolearius DSM 11571]
          Length = 295

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 21/224 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++R + R +     I VA+SGG DS  LL  L     +R    I   AIS+D  +    
Sbjct: 36  KAIRKY-RWISQGDRIAVAMSGGKDSSALLHFLAKTFGERR--DITIFAISIDEGICGY- 91

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAK 115
             +++ V  +  R  ++   VS+K++   T     A++            R  L+++ A+
Sbjct: 92  -RDMKPVEKIAERYGVSFHSVSFKDAYGFTLDEIVAKQGDRISCSRCGVLRRHLLNKTAR 150

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            + AT I      DD+ ++V M + R  AE  +        +  +  +   RPF+     
Sbjct: 151 ELGATKIALGFNLDDEAQSVLMNALRGDAETLV-----RRQVPREGFIPRIRPFIHLPER 205

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           ++  + L     + E       +  R  VR  +   +      K
Sbjct: 206 EVALYALLNVEGFIEAGCPYSKKALRADVREILNIYNYRHPAAK 249


>gi|195379938|ref|XP_002048729.1| GJ21203 [Drosophila virilis]
 gi|226711422|sp|B4LM02|CTU1_DROVI RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|194143526|gb|EDW59922.1| GJ21203 [Drosophila virilis]
          Length = 343

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 72/206 (34%), Gaps = 13/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + VA SGG DS  L   L  +L++R    +    +S+D  +     D +  V    
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLK-LLNERHDYGLDLVLLSIDEGITGYRDDSLETVKQNR 107

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              ++   ++S++               ++         R   +   AK +    I T H
Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +    + +  T   + ++   +P      ++I  +   + +
Sbjct: 168 NADDIAETVLMNILRGDTARLRRCTDI-RTGGSEDSIPRVKPLKYSYEKEIVMYAHYKKL 226

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R F++D++
Sbjct: 227 VYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|284098925|ref|ZP_06385979.1| tRNA(Ile)-lysidine synthetase [Candidatus Poribacteria sp. WGA-A3]
 gi|283830413|gb|EFC34619.1| tRNA(Ile)-lysidine synthetase [Candidatus Poribacteria sp. WGA-A3]
          Length = 158

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +   HT DDQ ETV +   R       GLSGM           + RPFL+  R +I
Sbjct: 12  GAAKVAVGHTQDDQAETVLLSMMRGSGL--AGLSGMPARREP----CVIRPFLQVSRSEI 65

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
             +L +R+  +  D SN + ++ R R+RR V  +
Sbjct: 66  LQYLDERHCGFRVDSSNENPKYARNRLRREVIPL 99


>gi|315919673|ref|ZP_07915913.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693548|gb|EFS30383.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 248

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +    A+ V   +  +   +  E  Y+  
Sbjct: 31  GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +            +  +          R   +   AK      I   H  DD L
Sbjct: 86  HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R+
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELATLRH 194


>gi|260171362|ref|ZP_05757774.1| hypothetical protein BacD2_05800 [Bacteroides sp. D2]
          Length = 255

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +    A+ V   +  +   +  E  Y+  
Sbjct: 38  GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 92

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +            +  +          R   +   AK      I   H  DD L
Sbjct: 93  HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 152

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R+
Sbjct: 153 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELATLRH 201


>gi|212724116|ref|NP_001132208.1| hypothetical protein LOC100193637 [Zea mays]
 gi|194693758|gb|ACF80963.1| unknown [Zea mays]
          Length = 364

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 71/206 (34%), Gaps = 14/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L  +    ++G +    +SVD  +     D +  V    
Sbjct: 65  AGERVAIGASGGKDSTVLAYVLSELNRQHNYG-LDLFLLSVDEGITGYRDDSLETVKRNE 123

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   +VS+K+           +             R   +   A  + A  I+T H
Sbjct: 124 IQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKADKIVTGH 183

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV +   R    +    + +  T   D  +   +PF     ++I  +   + +
Sbjct: 184 NADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVMYAYFKKL 241

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R F++D++
Sbjct: 242 DYFSTECIYSPNAYRGFAREFIKDLE 267


>gi|225459814|ref|XP_002285915.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 356

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 70/212 (33%), Gaps = 19/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   I +  SGG DS  L   L  + + R    +    +SVD  +     D +  V
Sbjct: 56  QLFKPGERIAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEGITGYRDDSLETV 114

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   VVS+K+                         R   +   A  +    +
Sbjct: 115 KRNEIQYGLPLKVVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAAMLKVDKL 174

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
            T H  DD  ETV +   R    +       C +I+   +  I R  PF     ++I  +
Sbjct: 175 ATGHNADDIAETVLLNILRGDIARLS----RCTSIITGEDGPIPRCKPFKYTYEKEIVMY 230

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R F++D++
Sbjct: 231 AYFKRLDYFSTECIYSPNAYRGFAREFIKDLE 262


>gi|212540204|ref|XP_002150257.1| PP-loop ATPase superfamily protein, putative [Penicillium marneffei
           ATCC 18224]
 gi|210067556|gb|EEA21648.1| PP-loop ATPase superfamily protein, putative [Penicillium marneffei
           ATCC 18224]
          Length = 419

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 69/209 (33%), Gaps = 19/209 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I +  SGG DS  L   + ++ ++R    +    +S+D  ++    D +  V    
Sbjct: 50  RGERIAIGASGGKDSTVLASVMKTL-NERYDYGLNLVLLSIDEGIKGYRDDSLETVKRNA 108

Query: 78  SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   +V                  + G        R   +   A  +    I+T H
Sbjct: 109 EQYEMPLEIVGYDELYGWTMDQVVAQVGKKGNCTYCGVFRRQALDRGAARLGIKHIVTGH 168

Query: 127 TFDDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             DD  ETV M   R       +G  +    D+     ++  S+P      ++I  +   
Sbjct: 169 NADDVAETVMMNLLRGDLPRLSRGTSIVTGQDS----TDMKRSKPLKYAYEKEIVLYAHH 224

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212
           + + +            R   R  ++D++
Sbjct: 225 KKLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|42523537|ref|NP_968917.1| hypothetical protein Bd2064 [Bdellovibrio bacteriovorus HD100]
 gi|81617210|sp|Q6MLE7|TTCA_BDEBA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|39575743|emb|CAE79910.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
          Length = 259

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 19/205 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V VSGG DS  LL  L  +   RS  K +  A  +D   ++    +V        
Sbjct: 32  GDKVMVCVSGGKDSSVLLALLTEIQR-RSERKFQIEAAILD---QKQPGFDVSKFKVWVE 87

Query: 79  RLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L +   +V        K         +     R A++ + A     T +   H  DD +
Sbjct: 88  SLGVPFHIVEKDTYSIVKEKVQGGTFCSLCSRLRRAILYDFAHANGFTKLALGHHRDDVV 147

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            T  +         G   +        D    + RP       DI     +        P
Sbjct: 148 HTALLNMF----YVGTTAAMPPKLKSDDERNILVRPLCYVSERDIEELAAEWAFPVI--P 201

Query: 193 SNT---DDRFERVRVRRFVRDIDLH 214
            N     D  +R R+++ VRD++  
Sbjct: 202 CNLCGSQDGLKRQRIKKLVRDLEKE 226


>gi|194753600|ref|XP_001959100.1| GF12710 [Drosophila ananassae]
 gi|226711416|sp|B3MI77|CTU1_DROAN RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|190620398|gb|EDV35922.1| GF12710 [Drosophila ananassae]
          Length = 343

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 69/208 (33%), Gaps = 17/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + VA SGG DS  L   L  +L++R    +    +S+D  +     D +  V    
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLK-LLNERHDYGLDLVLLSIDEGITGYRDDSLETVKQNR 107

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              ++   ++S++               ++         R   +   AK +    I T H
Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSIATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +   L    D         I   +P      ++I  +   +
Sbjct: 168 NADDIAETVLMNILRGDTAR---LRRCTDIKTGGGEDSIPRVKPLKYSYEKEIVMYAHYK 224

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R F++D++
Sbjct: 225 KLVYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|289755752|ref|ZP_06515130.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis EAS054]
 gi|289696339|gb|EFD63768.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis EAS054]
          Length = 323

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 109/331 (32%), Gaps = 37/331 (11%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
            +   F R  L       V +SGG DS+ L      +           +A+ VDH L+  
Sbjct: 12  AAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPG 63

Query: 66  AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +             L  +   V+  +         AA      +      +      ++ 
Sbjct: 64  SATVAETARIQAISLGCVDARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLL 118

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AHT DDQ ETV +   R    +      +     YD      RP L  RR    +   + 
Sbjct: 119 AHTLDDQAETVLLGLGRGSGARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACREL 171

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236
            ++  +DP NTD RF R R+R  V  +           AL       ++    ++   A 
Sbjct: 172 GLTAWQDPHNTDRRFTRTRLRTEVLPLLEEVLGGGVAEALARTATALREDTDLIDTIAAQ 231

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFL 294
            +P       R     +  +  +   +   ++R    + GG   L     R ++R++   
Sbjct: 232 ALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAW 290

Query: 295 KS----GKRGCVSIGRVVIDRRANFLWITRA 321
           +          +   R+V  RR   L + R 
Sbjct: 291 RGQGGVAVGSTLRGQRLVAGRRDGVLVLRRE 321


>gi|289192268|ref|YP_003458209.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938718|gb|ADC69473.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
          Length = 311

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 27/223 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEVRYVSDVC 77
            I + VSGG DS+ +   L  +    +    K     VD  +   RE AK    YV + C
Sbjct: 47  KIGIGVSGGKDSLVMAYILKKLFE--NIPNSKLICFFVDEGIKGFREKAK---EYVKEFC 101

Query: 78  SRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINATL 121
               +   ++ +++    T                   +     R  L++++A       
Sbjct: 102 EEHNLDLKIIKFEDEIGYTLDEIIKNNYLSKLNIGKPCSFCGVVRRYLLNKYALKEGCDY 161

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +   H  DD  +T+ M       +    +         +  +   +P      +++R + 
Sbjct: 162 LAIGHNLDDFCQTILMNYIEGNIKN---IVQFGKEFEGEGFVKRIKPLKLIPEDEVRLYA 218

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
              NI +  +P        R R+++ +  ++     +K    +
Sbjct: 219 EINNIRYQREPCPYSSLSYRHRMKKIIEILEKEKPGVKFSILR 261


>gi|303244455|ref|ZP_07330790.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
 gi|302485153|gb|EFL48082.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
          Length = 330

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 44/228 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLRETAKD--EVRY 72
               I+V +SGG DS+ LL  L      R    I+  AI++D     +R  + D   +  
Sbjct: 74  PKDKIIVGLSGGKDSLALLHLL---EPYRRRYGIEIYAITIDLNINGIRPWSSDNKNMAS 130

Query: 73  VSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAR-----EARYALISEHAKTIN 118
           +   C  L I H ++ +           S+   G+  +         RY L +   K + 
Sbjct: 131 IKKHCENLNIPHKIIGFDKDVVEMSKILSENTKGIEYSPCFSCSVVRRYILTNFAMKLLE 190

Query: 119 AT---------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--------L 161
                       I   HT +D  +T+     +    K +      +  ++D         
Sbjct: 191 VNTNNIDINKIKICLGHTLEDNSDTILANILKGDVIKTLEPLKNFEEAVFDFKEFKLKLQ 250

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR---VRR 206
              I RP L    ++I   L + +IS+  D    +  + R +   +R+
Sbjct: 251 KSTIIRPLLSVSEKEIIKALNECSISYYRDK--DECPYSRDKGDSIRK 296


>gi|15610761|ref|NP_218142.1| cell cycle protein MESJ [Mycobacterium tuberculosis H37Rv]
 gi|15843237|ref|NP_338274.1| hypothetical protein MT3727 [Mycobacterium tuberculosis CDC1551]
 gi|31794795|ref|NP_857288.1| cell cycle protein MESJ [Mycobacterium bovis AF2122/97]
 gi|121639538|ref|YP_979762.1| putative cell cycle protein mesJ [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148663488|ref|YP_001285011.1| putative cell cycle protein MesJ [Mycobacterium tuberculosis H37Ra]
 gi|148824829|ref|YP_001289583.1| cell cycle protein mesJ [Mycobacterium tuberculosis F11]
 gi|167968544|ref|ZP_02550821.1| cell cycle protein mesJ [Mycobacterium tuberculosis H37Ra]
 gi|215413545|ref|ZP_03422217.1| cell cycle protein mesJ [Mycobacterium tuberculosis 94_M4241A]
 gi|215424866|ref|ZP_03422785.1| cell cycle protein mesJ [Mycobacterium tuberculosis T92]
 gi|215447962|ref|ZP_03434714.1| cell cycle protein mesJ [Mycobacterium tuberculosis T85]
 gi|224992035|ref|YP_002646724.1| putative cell cycle protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253800663|ref|YP_003033664.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 1435]
 gi|254233123|ref|ZP_04926449.1| cell cycle protein mesJ [Mycobacterium tuberculosis C]
 gi|254366177|ref|ZP_04982221.1| cell cycle protein mesJ [Mycobacterium tuberculosis str. Haarlem]
 gi|254552737|ref|ZP_05143184.1| cell cycle protein mesJ [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260184542|ref|ZP_05762016.1| cell cycle protein mesJ [Mycobacterium tuberculosis CPHL_A]
 gi|260202808|ref|ZP_05770299.1| cell cycle protein mesJ [Mycobacterium tuberculosis K85]
 gi|289445218|ref|ZP_06434962.1| cell cycle protein mesJ [Mycobacterium tuberculosis CPHL_A]
 gi|289555884|ref|ZP_06445094.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 605]
 gi|289571861|ref|ZP_06452088.1| cell cycle protein mesJ [Mycobacterium tuberculosis T17]
 gi|289572272|ref|ZP_06452499.1| cell cycle protein mesJ [Mycobacterium tuberculosis K85]
 gi|289747461|ref|ZP_06506839.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Mycobacterium tuberculosis 02_1987]
 gi|289748139|ref|ZP_06507517.1| cell cycle protein mesJ [Mycobacterium tuberculosis T92]
 gi|289759783|ref|ZP_06519161.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis T85]
 gi|289763801|ref|ZP_06523179.1| cell cycle protein mesJ [Mycobacterium tuberculosis GM 1503]
 gi|294995465|ref|ZP_06801156.1| tRNA(Ile)-lysidine synthetase [Mycobacterium tuberculosis 210]
 gi|297636297|ref|ZP_06954077.1| tRNA(Ile)-lysidine synthetase [Mycobacterium tuberculosis KZN 4207]
 gi|297733291|ref|ZP_06962409.1| tRNA(Ile)-lysidine synthetase [Mycobacterium tuberculosis KZN R506]
 gi|298527101|ref|ZP_07014510.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis 94_M4241A]
 gi|306777978|ref|ZP_07416315.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu001]
 gi|306786531|ref|ZP_07424853.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu003]
 gi|306790898|ref|ZP_07429220.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu004]
 gi|306791218|ref|ZP_07429520.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu005]
 gi|306796004|ref|ZP_07434306.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu006]
 gi|306801251|ref|ZP_07437919.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu008]
 gi|306805465|ref|ZP_07442133.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu007]
 gi|306974096|ref|ZP_07486757.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu010]
 gi|307081804|ref|ZP_07490974.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu011]
 gi|308378388|ref|ZP_07668734.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu009]
 gi|313660622|ref|ZP_07817502.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis KZN V2475]
 gi|54039902|sp|P67152|TILS_MYCBO RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|54042637|sp|P67151|TILS_MYCTU RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|2105069|emb|CAB08823.1| POSSIBLE CELL CYCLE PROTEIN MESJ [Mycobacterium tuberculosis H37Rv]
 gi|13883593|gb|AAK48088.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31620392|emb|CAD95835.1| POSSIBLE CELL CYCLE PROTEIN MESJ [Mycobacterium bovis AF2122/97]
 gi|121495186|emb|CAL73672.1| Possible cell cycle protein mesJ [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124602916|gb|EAY61191.1| cell cycle protein mesJ [Mycobacterium tuberculosis C]
 gi|134151689|gb|EBA43734.1| cell cycle protein mesJ [Mycobacterium tuberculosis str. Haarlem]
 gi|148507640|gb|ABQ75449.1| putative cell cycle protein MesJ [Mycobacterium tuberculosis H37Ra]
 gi|148723356|gb|ABR07981.1| cell cycle protein mesJ [Mycobacterium tuberculosis F11]
 gi|224775150|dbj|BAH27956.1| putative cell cycle protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253322166|gb|ACT26769.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 1435]
 gi|289418176|gb|EFD15377.1| cell cycle protein mesJ [Mycobacterium tuberculosis CPHL_A]
 gi|289440516|gb|EFD23009.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 605]
 gi|289536703|gb|EFD41281.1| cell cycle protein mesJ [Mycobacterium tuberculosis K85]
 gi|289545615|gb|EFD49263.1| cell cycle protein mesJ [Mycobacterium tuberculosis T17]
 gi|289687989|gb|EFD55477.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Mycobacterium tuberculosis 02_1987]
 gi|289688726|gb|EFD56155.1| cell cycle protein mesJ [Mycobacterium tuberculosis T92]
 gi|289711307|gb|EFD75323.1| cell cycle protein mesJ [Mycobacterium tuberculosis GM 1503]
 gi|289715347|gb|EFD79359.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis T85]
 gi|298496895|gb|EFI32189.1| tRNA(Ile)-lysidine synthase [Mycobacterium tuberculosis 94_M4241A]
 gi|308213692|gb|EFO73091.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu001]
 gi|308328855|gb|EFP17706.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu003]
 gi|308332696|gb|EFP21547.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu004]
 gi|308340189|gb|EFP29040.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu005]
 gi|308343476|gb|EFP32327.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu006]
 gi|308347974|gb|EFP36825.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu007]
 gi|308351916|gb|EFP40767.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu008]
 gi|308352675|gb|EFP41526.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu009]
 gi|308356550|gb|EFP45401.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu010]
 gi|308360508|gb|EFP49359.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu011]
 gi|323717675|gb|EGB26876.1| cell cycle protein mesJ [Mycobacterium tuberculosis CDC1551A]
 gi|326905460|gb|EGE52393.1| cell cycle protein mesJ [Mycobacterium tuberculosis W-148]
 gi|328460393|gb|AEB05816.1| cell cycle protein mesJ [Mycobacterium tuberculosis KZN 4207]
          Length = 323

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 109/331 (32%), Gaps = 37/331 (11%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
            +   F R  L       V +SGG DS+ L      +           +A+ VDH L+  
Sbjct: 12  AAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPG 63

Query: 66  AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +             L  +   V+  +         AA      +      +      ++ 
Sbjct: 64  SATVAETARIQAISLGCVDARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLL 118

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AHT DDQ ETV +   R    +      +     YD      RP L  RR    +   + 
Sbjct: 119 AHTLDDQAETVLLGLGRGSGARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACREL 171

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236
            ++  +DP NTD RF R R+R  V  +           AL       ++    ++   A 
Sbjct: 172 GLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQ 231

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFL 294
            +P       R     +  +  +   +   ++R    + GG   L     R ++R++   
Sbjct: 232 ALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAW 290

Query: 295 KS----GKRGCVSIGRVVIDRRANFLWITRA 321
           +          +   R+V  RR   L + R 
Sbjct: 291 RGQGGVAVGSTLRGQRLVAGRRDGVLVLRRE 321


>gi|224146018|ref|XP_002336280.1| predicted protein [Populus trichocarpa]
 gi|222833681|gb|EEE72158.1| predicted protein [Populus trichocarpa]
          Length = 314

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 11/208 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77
              ILV VSGG DS  LL  L  +   R+  + +   ++VD        D    ++ +  
Sbjct: 88  GDRILVGVSGGKDSYTLLHILDRLRR-RAPIRYELVPVTVDSGYPGFRTDLIAEHLREHG 146

Query: 78  SRLRIAHSV---VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              R+ H+    +  +  +P +   A     R  ++   A  +    +   H  DD +ET
Sbjct: 147 FADRVEHTDCYRIITEKRRPGSSFCAFCARLRRGVLYSVADELGCNKLALGHHLDDVIET 206

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +         G   +     +  +    + RP +     DI  F  Q           
Sbjct: 207 LLLNQF----YIGTLGAMSPKLLADNGRHTVIRPLVYVPEADIIEFARQNAFPLVCCSCP 262

Query: 195 TDDRFE--RVRVRRFVRDIDLHALYLKM 220
              R +  R R+++ + D+ +   +++ 
Sbjct: 263 AHARQDQKRQRMKKLISDLSIEIPHIRQ 290


>gi|309361541|emb|CAP29374.2| hypothetical protein CBG_09825 [Caenorhabditis briggsae AF16]
          Length = 1092

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 87/231 (37%), Gaps = 30/231 (12%)

Query: 1    MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAIS 57
            M+    + +   ++ +     +LV +SGG DS+ LL  L       +  +    +  AI+
Sbjct: 835  MYKKVTDVIHQ-LKMIRNGDKVLVCLSGGKDSLSLLHILRHYQQRCNKARSTSFQLGAIT 893

Query: 58   VDHCLRETAKDEVRY----VSDVCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARY 107
            VD      +     +    + + C +L I +      ++      P    + A     + 
Sbjct: 894  VD----PGS---AEFNPRPLIEYCRKLNIDYFYEEQDIIGAAMKTPGLRSICAFCSRMKR 946

Query: 108  ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
              ++  A+     ++      DD  E+ ++ + ++    G   +        D  L + R
Sbjct: 947  GRLAAAAQFHGWNVLAMGQHLDDLAESFFIAAFQN----GNLSTMKAQYTTKDNQLRVIR 1002

Query: 168  PFLRCRREDIRSFLLQR---NISWC--EDPSNTDDRFERVRVRRFVRDIDL 213
            P +  R + +R+F  ++    +       P+  +   ER R+++ +   +L
Sbjct: 1003 PLIMVREKALRNFAEEKMFSELPVVAENCPACFNQATERHRIKQLLAQQEL 1053


>gi|237713442|ref|ZP_04543923.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407229|ref|ZP_06083777.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_22]
 gi|294647335|ref|ZP_06724928.1| PP-loop family protein [Bacteroides ovatus SD CC 2a]
 gi|294809044|ref|ZP_06767766.1| PP-loop family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446424|gb|EEO52215.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354037|gb|EEZ03129.1| tRNA(Ile)-lysidine synthetase [Bacteroides sp. 2_1_22]
 gi|292637294|gb|EFF55719.1| PP-loop family protein [Bacteroides ovatus SD CC 2a]
 gi|294443769|gb|EFG12514.1| PP-loop family protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 248

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +    A+ V   +  +   +  E  Y+  
Sbjct: 31  GDKILIGLSGGKDSLALVELLGK-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +            +  +          R   +   AK      I   H  DD L
Sbjct: 86  HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R+
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELAALRH 194


>gi|153951034|ref|YP_001397372.1| PP-loop family protein [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938480|gb|ABS43221.1| PP-loop family protein [Campylobacter jejuni subsp. doylei 269.97]
          Length = 253

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +L+ +SGG DS+ L   L+ + +   F K +  A++    L     ++   +   C 
Sbjct: 25  GDRVLLGLSGGKDSLALAHLLNRMQAHVPF-KFELEAVT----LSYGMGEDYSGLHAHCE 79

Query: 79  RLRIAHSVV-------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I HSV+       S    +  +   +     R   +  +A       +  AH  DD 
Sbjct: 80  EHDIKHSVLDSNIYEMSGDTIRENSSFCSYFSRMRRGTLYTYALEKGFNKLAIAHHLDDA 139

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            E+ +M    + A     L  +         + + RP +  R   +R+   Q  +S  
Sbjct: 140 AESFFMNFIHNGA-----LRTLAPIYQSKRGVTVIRPLIFVRERQLRNNATQNELSVI 192


>gi|281204433|gb|EFA78628.1| Aminotransferase [Polysphondylium pallidum PN500]
          Length = 1137

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 20/181 (11%)

Query: 20   AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCS 78
              ILV VSGG DS+ L+ +L  +   RS  K   +A +VD      + D +   +    +
Sbjct: 885  DKILVGVSGGKDSLTLIHSLIDIRR-RSKAKFTIAACTVD----PQSDDYDPSPLKRYFA 939

Query: 79   RLRIAHSVVS----------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             L I +  VS           K    +  + A     R  ++    +  N T +      
Sbjct: 940  SLDIPYFYVSQAVMDAAKVCMKEGSSRASICAFCSRMRRGILYNVCRQNNFTTLALGQHL 999

Query: 129  DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            DD  E+  M +  +     M ++ M +      ++ I RP    R    R +     +  
Sbjct: 1000 DDLSESFVMSAFYNGKLSSMKVNYMNEQ----GDIRIIRPLCNLRESQTRQYARLMALPV 1055

Query: 189  C 189
             
Sbjct: 1056 I 1056


>gi|170588925|ref|XP_001899224.1| n-type ATP pyrophosphatase-like [Brugia malayi]
 gi|158593437|gb|EDP32032.1| n-type ATP pyrophosphatase-like, putative [Brugia malayi]
          Length = 348

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 69/208 (33%), Gaps = 18/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I +  SGG DS  L+  L+ +     +G +    +SVD  +     D ++ V    
Sbjct: 47  KGKKIAIGASGGKDSTVLIHVLNKLNQKHDYG-LDIILLSVDEGIAGYRGDSLKAVERNR 105

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   +   V+S+K            +             R   +   A    A +I T H
Sbjct: 106 NDYGLPLVVMSYKQLYGWTMDEIVSAVGARNNCTFCGVFRRRALDRGAIECGAHIIATGH 165

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184
             DD  ETV +   R    +       C  I+  L   + R  P      +DI  +    
Sbjct: 166 NADDMAETVLLNVLRGDLAR----LQRCTEIVTGLEGCLPRTKPLKYVFEKDIVMYAHFN 221

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R  VR +VR ++
Sbjct: 222 RLDYFSTECRYAPDSFRNYVRMYVRKLE 249


>gi|15679734|ref|NP_276852.1| hypothetical protein MTH1742 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622874|gb|AAB86212.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 270

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LV +SGG DS+ ++  L  +   R    I+  A+++D  +    +D VR    +C
Sbjct: 12  RGDRVLVGLSGGKDSVMVIDILDEL---RERNIIELEAVTIDEGIGGYREDGVRIARKIC 68

Query: 78  SRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +   I H VVS ++            P           R  +++  A+   AT I T H 
Sbjct: 69  ADRGIPHRVVSLEDYAGITLDEIMKNPSRSACTYCGVFRRWILNREARKSKATKIATGHN 128

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD+ + + M       E    +  M  +      +   +P      +++  ++L R + 
Sbjct: 129 LDDETQAIVMNYLEGNLENLTRIGPMTSSAG-GRFIPKIKPLREIPEKEVALYVLARGLD 187


>gi|119189797|ref|XP_001245505.1| hypothetical protein CIMG_04946 [Coccidioides immitis RS]
          Length = 1673

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 73/210 (34%), Gaps = 14/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L YP   + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V
Sbjct: 46  ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS                 + G        R   +   A  +    +
Sbjct: 105 KRNAVQYDMPLEIVSYGELYGWTMDQVVAEIGKKGNCTYCGVFRRQALDRGAAKLGIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    +    + +  T      +  S+P      ++I  +  
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLARGTYIV-TGSSASEIKRSKPLKYAYEKEIVLYAH 223

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            +N+ +            R   R  ++D++
Sbjct: 224 HKNLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|297705651|ref|XP_002829685.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Pongo
           abelii]
          Length = 348

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 20/215 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L ++        I    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRALAPRLG---ISLQLVAVDEGIGGYRDAALAAV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +R  +  +VV++++      + A AR                  R   + E A+ +
Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT I+T H  DD  ETV M   R  A +     G+         L   RP     ++++
Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQFASQKEV 221

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +   R + +  +         R   R  ++ ++
Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256


>gi|254571793|ref|XP_002493006.1| Protein required for thiolation of the uridine at the wobble
           position of Gln, Lys, and Glu tRNAs [Pichia pastoris
           GS115]
 gi|238032804|emb|CAY70827.1| Protein required for thiolation of the uridine at the wobble
           position of Gln, Lys, and Glu tRNAs [Pichia pastoris
           GS115]
 gi|328352982|emb|CCA39380.1| hypothetical protein PP7435_Chr3-0418 [Pichia pastoris CBS 7435]
          Length = 362

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 99/310 (31%), Gaps = 35/310 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L ++ ++R    ++   +S+D  +     D +  V    
Sbjct: 53  KGERVAIGASGGKDSTVLAHILKTL-NERYDYGLELVLLSIDEGIVGYRDDSLATVKRNK 111

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + ++   +VS+K                          R   +   A  +    ++T H
Sbjct: 112 EQYQMPLEIVSYKELYSWSMDEIVACAGIRSSCTYCGVLRRQALDRGAARLGIAHVVTGH 171

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +    + +  T      +  S+PF     ++I  +   + +
Sbjct: 172 NADDMAETVLMNLLRGDVNRLESSTNII-TQSSGSPIKRSKPFKYTYEKEIVLYAHYKKL 230

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLH---------------ALYLKMKKFQDLRVKVN 231
            +            R   R  ++ ++                  L  K ++   ++    
Sbjct: 231 DYFSTECTYAPEAFRGTARTLLKSLEAIKPSCIIDIIQSGENFKLKPKKQRKNVVKRNTA 290

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL-------RVSAAICGGQISLPGY 284
             + +     ++++       S   L+ +      +L       R    I GG I++ G 
Sbjct: 291 QEIEVRGDGSVSLNKDGNKCESCGYLSTNKICKACILLKGLESSRAKVPIEGGNIAIDGA 350

Query: 285 RSMERVMLFL 294
             + + +  L
Sbjct: 351 AQVTKKLETL 360


>gi|111021375|ref|YP_704347.1| cell cycle protein [Rhodococcus jostii RHA1]
 gi|123144654|sp|Q0S8E7|TILS_RHOSR RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|110820905|gb|ABG96189.1| possible cell cycle protein [Rhodococcus jostii RHA1]
          Length = 325

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 64/280 (22%), Positives = 102/280 (36%), Gaps = 21/280 (7%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L    +VR ++ +      I VA+SGG           ++ +  +       A+ VDH L
Sbjct: 10  LEVRHAVRRWIAAHAPDGEIAVALSGG-------ADSLALTAAAAAEARSVCALVVDHRL 62

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +  + D     +     L  A + V   +     GL AAAR+ARY  +           +
Sbjct: 63  QPGSADVADEAAARARALGCASAEVLPVDVTGSGGLEAAARQARYRALDSAR---GTRPV 119

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  HT DDQ ETV +   R     G  + GM        +    RP L  RR   R    
Sbjct: 120 LLGHTLDDQAETVLLGLSRGSG--GRSIWGMSAY-----DTPWGRPLLDVRRALTRQACA 172

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK-KFQDLRVKVNNAVAMLIPKY 241
           +  +S  EDP N    F RVR+R  V  +    L   +          +    A+L    
Sbjct: 173 ELGLSPHEDPHNASPDFVRVRLRTEVLPLLEDVLGGGVAGALARTGEHLREEGAVLDAMA 232

Query: 242 LTVHMRSII--AISQDILNID-STLLFYLLRVSAAICGGQ 278
                ++++   I   +L +    +   +LR      G +
Sbjct: 233 ADAQAKAVVEGEIDTALLALSAPPVRRRVLRSWLLAAGAR 272


>gi|118444965|ref|YP_878932.1| hypothetical protein NT01CX_0461 [Clostridium novyi NT]
 gi|118135421|gb|ABK62465.1| conserved hypothetical protein [Clostridium novyi NT]
          Length = 245

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 31/231 (13%)

Query: 10  RFFVRSLV----------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           R F+R L               + V +SGG DS+ LL AL  ++   S    +   I++D
Sbjct: 10  RQFLRYLRKSIEEYNMISPGDKVAVGLSGGKDSIFLLFALK-LIQLTSIKDFELVGINID 68

Query: 60  HCLRETAKDEVRY--VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALIS 111
                    E+    + D C+   I   V +          + +    +   + R   + 
Sbjct: 69  LGF------ELNISPLVDFCNNNNIPIIVETTNIAEVVFEDRKEKKPCSLCSKLRKGALI 122

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A+  N   I   H  DD +ET++M   +   + G     +      D ++ I RP + 
Sbjct: 123 RVARANNMNKIALGHNSDDVIETLFMNVLK-VGKLGTFHPNIH---FDDKDISIIRPLIY 178

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
            R + I     +  +   + P   D +  R  ++  +  I L  +Y   ++
Sbjct: 179 LREDLIEKLTEKYELPVIKSPCPMDKKTTREDMKNLL--ISLEKIYPDAQR 227


>gi|294495611|ref|YP_003542104.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
 gi|292666610|gb|ADE36459.1| PP-loop domain protein [Methanohalophilus mahii DSM 5219]
          Length = 255

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 80/201 (39%), Gaps = 20/201 (9%)

Query: 2   FLSPIES-VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F   +E  VR  +     ++   HI VA+SGG DS  LL  L  +L +  F  +K +AI+
Sbjct: 29  FCEMVEKKVRAHIEDQNLILNNEHIAVALSGGKDSSVLLYILAKILPE--FEGVKLTAIT 86

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARY 107
           VD  +    ++ + Y  ++ + L I H +VS++            K            R 
Sbjct: 87  VDEGIPNYREETLTYAQELATFLNIEHRIVSFRENFGAPLPDLLKKRNVSACTLCGVLRR 146

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            ++ +   +++   + T H+ DD+ ET  M       +    +           +L I +
Sbjct: 147 KILEQETFSMDVPKLATGHSLDDEAETAMMNILTANID---AIINTASPNSGKESLRI-K 202

Query: 168 PFLRCRREDIRSFLLQRNISW 188
           P       +I  + + + I  
Sbjct: 203 PLSVLNEHEIALYGILKGIFH 223


>gi|160931446|ref|ZP_02078842.1| hypothetical protein CLOLEP_00279 [Clostridium leptum DSM 753]
 gi|156869511|gb|EDO62883.1| hypothetical protein CLOLEP_00279 [Clostridium leptum DSM 753]
          Length = 269

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 22/238 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG--KIKFSAISVD- 59
           L P+ +       +     I V VSGG DS+   + L ++ + R F   + + +A++ D 
Sbjct: 35  LGPMRAAVEKYHMIGEGDRIAVGVSGGKDSL---VLLCALAALREFYPSRFEVAALTADP 91

Query: 60  --HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALIS 111
             H        +   + ++C RL + + +   +        + +    +     R  ++ 
Sbjct: 92  QFHG----EPADYSQIEELCRRLGVPYHIRRTQLGRIIFEDRKEANPCSLCARMRRGILH 147

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             AK      +   H +DD +ET +M      +           + L    LW+ RP + 
Sbjct: 148 NMAKEAGCNKLALGHHYDDAVETFFMNLFNSGSLD----CFSPKSYLSRKELWLIRPLVF 203

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           C    + +   + ++   +     D    R + +  +  ++     LK K    +   
Sbjct: 204 CGERQVAAAANRCHLPVVKSECPADGSTSRQKTKELIARLEKDYPDLKSKVMGAVERA 261


>gi|17540090|ref|NP_499865.1| hypothetical protein F29C4.6 [Caenorhabditis elegans]
 gi|74960582|sp|O76365|CTU1_CAEEL RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1; AltName:
           Full=Thiolation of uridine in tRNA protein 1
 gi|3193157|gb|AAC19193.1| Hypothetical protein F29C4.6 [Caenorhabditis elegans]
          Length = 373

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 14/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   + ++ +DR    +    +S+D  ++    D +  V    
Sbjct: 56  RGERVAIGASGGKDSTVLAYVMKTL-NDRHDYGLDLQLLSIDEGIKGYRDDSLLAVEKNR 114

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               +  +++S+++              +          R   +   A  I AT ++T H
Sbjct: 115 VEYGLPLTILSYRDLYGWTMDDIVAKIGKKNNCTFCGVFRRQALDRGAFKIGATKLVTGH 174

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ET+ M   R    +    + +      + +L  ++P   C   DI  +     +
Sbjct: 175 NADDMAETLLMNVLRGDIARLERCTNI--VTGEEGDLPRAKPLKYCFERDIVMYARTNQL 232

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R++VRD++
Sbjct: 233 EYFYTECIYAPNAYRGYARKYVRDLE 258


>gi|296415350|ref|XP_002837353.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633217|emb|CAZ81544.1| unnamed protein product [Tuber melanosporum]
          Length = 352

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 17/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             + I +  SGG DS  L   L ++ ++R    ++F  +S+D  ++    D +  V    
Sbjct: 57  KGSRIAIGASGGKDSTVLASVLKTL-NERYDYGVEFVLLSIDEGIKGYRDDSLETVKRNA 115

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   +VS++            S  + G        R   +   A+ +    ++T H
Sbjct: 116 IQYGMELVIVSYEELYGWSMDSVVESIGKKGNCTYCGVFRRQALDRGAERLGIHHVVTGH 175

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +   L      I    +  I+R  P      ++I  + L +
Sbjct: 176 NADDIAETVLMNLLRGDLPR---LHRCTSIITSSTSSPIARSKPLKYAYEKEIVLYALHK 232

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R  ++ ++
Sbjct: 233 KLDYFSTECIYSPEAFRGSARTLIKALE 260


>gi|323447395|gb|EGB03318.1| hypothetical protein AURANDRAFT_68117 [Aureococcus anophagefferens]
          Length = 492

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 53  FSAISVDHCLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
            S ++ DH  R   +  +  +V+ +  R  +  +  +W +S   +  M      R     
Sbjct: 117 VSVLNFDHRQRGEISSCDTLFVAALARRFGLECTAHNWVHSSTHSSQMEFRAWRRTTSFK 176

Query: 112 ------EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
                 +         +  AH  DDQ+E+  +R  R        L+ +   +        
Sbjct: 177 TAFNVVDALIPQRCGHVALAHHADDQMESFLLRLARGSR-----LTNVFKGVASQAAPCF 231

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRFERVRVRRFVRDIDLH------ALYL 218
            RP L   + D+ ++L     SW ED +NTD   + R   R  V             L+ 
Sbjct: 232 VRPLLFATKHDLVTYLDADGESWREDTTNTDTTHYVRNLSRLTVLPPLRTLCGGSLQLHT 291

Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           ++K  Q         V+    ++L+   R+  A+S
Sbjct: 292 RLKALQYQAQFFEAWVSHAADEWLSYSTRADGAVS 326


>gi|297842365|ref|XP_002889064.1| hypothetical protein ARALYDRAFT_476769 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334905|gb|EFH65323.1| hypothetical protein ARALYDRAFT_476769 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 331

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 70/224 (31%), Gaps = 14/224 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I  V    R       + +  SGG DS  L   L  + + R    +    +SVD  
Sbjct: 20  FEEEIHQVIVGNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEG 78

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V     +  +   +VS+K+                         R   +
Sbjct: 79  ITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 138

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              A  +    ++T H  DD  ETV +   R    +         T   D  +   +PF 
Sbjct: 139 DRGAALLKVDKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 196

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
               ++I  +   + + +            R   R F++D++  
Sbjct: 197 YTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERP 240


>gi|255011863|ref|ZP_05283989.1| hypothetical protein Bfra3_22183 [Bacteroides fragilis 3_1_12]
 gi|313149698|ref|ZP_07811891.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138465|gb|EFR55825.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 249

 Score =  103 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              +LV +SGG DS+ L+  L    S     +    A+ V   +  +   +  +  Y+  
Sbjct: 31  GDKVLVGLSGGKDSLALVELLGK-RSRIFKPRFSVVAVHVVMKN--IPYQSDLD--YLRA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +   V       ++  +          R   +   AK      I   H  DD L
Sbjct: 86  HAESYGVPLVVYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R 
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMNKFDMTIIRPMCLVHEADLLELAQIRG 194


>gi|294934126|ref|XP_002780992.1| hypothetical protein Pmar_PMAR018043 [Perkinsus marinus ATCC 50983]
 gi|239891163|gb|EER12787.1| hypothetical protein Pmar_PMAR018043 [Perkinsus marinus ATCC 50983]
          Length = 733

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 91/245 (37%), Gaps = 29/245 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +++++SGG DSM  L  L  +     F   K  A  + H  R+ A  E+++V+ V +
Sbjct: 254 PKVLVLSLSGGVDSMTHLYLLSKLQQPLGF---KLVACHIRHSNRDDAIQELQWVTYVTA 310

Query: 79  RLRIAHSVVSWKNSKPQTGL---------MAAAREARYALISEHAKTINAT--------- 120
           RL +       K  +P   L             R+ R+++ ++  K   A          
Sbjct: 311 RLGVPLYHHHVKLRRPHGSLKTGISRMDYEKQTRDIRFSMYAKAHKLAWAAAGLPEEERT 370

Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRP-FLRCRRE 175
             +++  H  DD  E       +       G+    +    D    +   RP  L  R+E
Sbjct: 371 QPVVVVGHHMDDVDENRLAELGKGNLLNINGMVINAEGDGDDEIGGVCQVRPLLLSTRKE 430

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           ++ +   + NI +  D +    R  R  +R  V D+   A     K F     +  +   
Sbjct: 431 ELIACAARHNIPYMVDSTPKWSR--RGWIR-GVLDLGFPADGEARKSFLQDLTEAGDLSD 487

Query: 236 MLIPK 240
           +L  +
Sbjct: 488 VLDQQ 492


>gi|189467530|ref|ZP_03016315.1| hypothetical protein BACINT_03920 [Bacteroides intestinalis DSM
           17393]
 gi|189435794|gb|EDV04779.1| hypothetical protein BACINT_03920 [Bacteroides intestinalis DSM
           17393]
          Length = 251

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 77/245 (31%), Gaps = 42/245 (17%)

Query: 10  RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DH 60
           + F + LV          IL+ +SGG DS+ L+  L    +     +    A+ V   + 
Sbjct: 16  KRFSKGLVEYGLIEDGDKILIGLSGGKDSLALVELLAR-RARIFKPRFAVVAVHVVMKN- 73

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTI 117
            +   +   + Y+ D      I   +   +   ++  +          R   +   AK  
Sbjct: 74  -IPYQSD--LTYLRDYVESWGIPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTVAKEQ 130

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I   H  DD LET+ M        +G   S     ++   ++ I RP       D+
Sbjct: 131 GCNKIALGHHMDDILETLLMNIT----FQGAFSSMPPRLVMKKFDMTIIRPMCLVHEVDL 186

Query: 178 RSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
                 R              S     SN  D      +   +  ++  A Y       +
Sbjct: 187 LELAQIRGYRKQVKNCPYEAQSHR---SNMKD------ILHQLEAMNPEARYSLWGSMAN 237

Query: 226 LRVKV 230
           ++ ++
Sbjct: 238 VQEEL 242


>gi|153807738|ref|ZP_01960406.1| hypothetical protein BACCAC_02020 [Bacteroides caccae ATCC 43185]
 gi|149129347|gb|EDM20561.1| hypothetical protein BACCAC_02020 [Bacteroides caccae ATCC 43185]
          Length = 248

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 15/172 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L   +      +    A+ V   +  +   +     Y+  
Sbjct: 31  GDKILIGLSGGKDSLALVELLGKRVRIYK-PRFSVVAVHVVMKN--IPYQSD--TAYLKA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +            +  +          R   +   AK      I   H  DD L
Sbjct: 86  HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           ET+ M        +G   +     ++   ++ I RP       D+       
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELAALH 193


>gi|237722675|ref|ZP_04553156.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448485|gb|EEO54276.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 248

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +    A+ V   +  +   +  E  Y+  
Sbjct: 31  GDKILIGLSGGKDSLALVELLGR-RAHIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +            +  +          R   +   AK      I   H  DD L
Sbjct: 86  HCEAYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R+
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELAALRH 194


>gi|328767927|gb|EGF77975.1| hypothetical protein BATDEDRAFT_17572 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 332

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 73/212 (34%), Gaps = 19/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +A SGG DS  L   L  +L+ R    +    +S+D  +     D +  V
Sbjct: 32  ALFKPGDRVAIAASGGKDSTVLAHVLC-ILNKRYNYGLDLCLLSIDEGITGYRDDSLETV 90

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  I   ++S+++                         R   +   A  +    +
Sbjct: 91  KRNEQQYGIPLKILSYQDLYGWTMDAIVKQIGLKNNCTFCGVFRRQALDRGAALLKVDHV 150

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ETV M   R    +       C +I    N  I R  PF     ++I  +
Sbjct: 151 VTGHNADDIAETVLMNFLRGDLAR----LQRCTSIKTATNEVIPRSKPFKYTYEKEIVMY 206

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R F++D++
Sbjct: 207 AYFKKLDYFSTECIYSPNAYRGYARAFLKDLE 238


>gi|291416188|ref|XP_002724329.1| PREDICTED: cytosolic thiouridylase subunit 1 homolog [Oryctolagus
           cuniculus]
          Length = 446

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 80/238 (33%), Gaps = 20/238 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L ++        +    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRALAPRLG---LALHLVAVDEGIGGYRDAALAAV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +R  +  +VV++ +      + A AR                  R   + E A+ +
Sbjct: 103 RRQAARWELPLTVVAYADLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT I+T H  DD  ETV M   R  A + +   G   +      L   RP     ++++
Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAAR-LARGGGLGSRGEGGALPRCRPLQLASQKEV 221

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
             +   R + +  +         R   R  ++ ++     + +              A
Sbjct: 222 VLYAHSRRLDYFSEECVYAPEAFRGHARDLLKRLEAARPSVVLDLVHSAERLALAPAA 279


>gi|268323619|emb|CBH37207.1| conserved hypothetical protein, PP-loop family [uncultured
           archaeon]
          Length = 302

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 83/202 (41%), Gaps = 23/202 (11%)

Query: 2   FLSPIE-SVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHS-VLSDRSFGKIKFSAI 56
           F++ +E  V+  +R  +   Y   I VA+SGG DS  LL  L   +  DR+   ++F AI
Sbjct: 28  FIADVERKVKKAMRKQLMIEYGDRIAVALSGGKDSSALLYMLKEKIFHDRN--DLEFFAI 85

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR-----------EA 105
           +VD  ++      +R    V   L I   + S+ +    T     A+             
Sbjct: 86  AVDEGIKGFRSATLRNAERVAKELEIDCFIYSFAHEFGFTLDEIVAKGFDQAPCTFCGVL 145

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R  ++   AK + AT ++TAH  DD+++T+ +   R   E+   L G     +       
Sbjct: 146 RRRILDVKAKEMGATKVVTAHNLDDEVQTILINYLRGDIERLGRLQGRRAEFVPR----- 200

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
            +P      ++   + L   I 
Sbjct: 201 VKPLRDVYEKEAALYALVAGIP 222


>gi|308369177|ref|ZP_07666673.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu002]
 gi|308328476|gb|EFP17327.1| cell cycle protein mesJ [Mycobacterium tuberculosis SUMu002]
          Length = 335

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 64/331 (19%), Positives = 109/331 (32%), Gaps = 37/331 (11%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
            +   F R  L       V +SGG DS+ L      +           +A+ VDH L+  
Sbjct: 24  AAAEQFARVHLDACDRWSVGLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPG 75

Query: 66  AKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +             L  +   V+  +         AA      +      +      ++ 
Sbjct: 76  SATVAETARIQAISLGCVDARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLL 130

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AHT DDQ ETV +   R    +      +     YD      RP L  RR    +   + 
Sbjct: 131 AHTLDDQAETVLLGLGRGSGARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACREL 183

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAM 236
            ++  +DP NTD RF R R+R  V  +           AL       ++    ++   A 
Sbjct: 184 GLTAWQDPHNTDRRFTRTRLRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQ 243

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFL 294
            +P       R     +  +  +   +   ++R    + GG   L     R ++R++   
Sbjct: 244 ALPGAAVAGSRGQELSTSALTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAW 302

Query: 295 KS----GKRGCVSIGRVVIDRRANFLWITRA 321
           +          +   R+V  RR   L + R 
Sbjct: 303 RGQGGVAVGSTLRGQRLVAGRRDGVLVLRRE 333


>gi|313897338|ref|ZP_07830881.1| PP-loop family protein [Clostridium sp. HGF2]
 gi|312957708|gb|EFR39333.1| PP-loop family protein [Clostridium sp. HGF2]
          Length = 317

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/253 (20%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              I V VSGG DSM LL ALH     +DR+F   +   I +              V   
Sbjct: 23  GDRIAVGVSGGKDSMVLLTALHMYSKFADRNF---EVVGIHIKLGF-PNMDFSE--VVAF 76

Query: 77  CSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           C +  I           ++     K      +   + + A + + AK +N T +   H  
Sbjct: 77  CRQQGITFYQYDSQVYEILKRNPDKEGNIKCSLCSKFKKATVIDAAKKLNCTKVAFGHHS 136

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET+ M +       G   + +    +   +    RP +     DI S L +  I +
Sbjct: 137 DDAVETLLMNAIHG----GKLATFLPKMYMSRTDTTFIRPLVYSYESDILSALERNQIPF 192

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            +  +  +D +     R+ ++D+ L   Y      Q   +++      +   +     R+
Sbjct: 193 VK-STCPNDGYTE---RQAMKDM-LQEFYRSYPMAQKNFIRMLYNEDQVELWHREGDHRA 247

Query: 249 IIAISQDILNIDS 261
             A S  +L  + 
Sbjct: 248 EKAKSMSVLLKEE 260


>gi|293370774|ref|ZP_06617320.1| PP-loop family protein [Bacteroides ovatus SD CMC 3f]
 gi|292634134|gb|EFF52677.1| PP-loop family protein [Bacteroides ovatus SD CMC 3f]
          Length = 248

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +    A+ V   +  +   +  E  Y+  
Sbjct: 31  GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +            +  +          R   +   AK      I   H  DD L
Sbjct: 86  HCETYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R+
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLMMKKFDMTIIRPMCLVHEADLVELAALRH 194


>gi|322804435|emb|CBZ01985.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum
           H04402 065]
          Length = 240

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 79/214 (36%), Gaps = 15/214 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ LL  L    S  S  K    AI++D         +   + +
Sbjct: 18  IQNGDKIAVGLSGGKDSIVLLHLLKKYQS-FSPEKFDLIAITLD----TMTGADFSPLEN 72

Query: 76  VCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           VCS + +   +          + + +    +     R   ++ ++K +    I   H  +
Sbjct: 73  VCSNINVPLYIYKTPIKEIVFDLRKEKNPCSLCANLRRGALNNYSKELGCNKIALGHHKN 132

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        +G        T L   N+ I R  +      I+S + + ++   
Sbjct: 133 DAIETLLMSML----YEGRVSCFSPKTYLNKANITIIRSMIYIDEIAIKSMIKRYDLPII 188

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           ++P   +   +R  ++     ++     +K +  
Sbjct: 189 KNPCPANGNTKRQYMKELTYTLEKDIPKVKDRLL 222


>gi|39995238|ref|NP_951189.1| C32 tRNA thiolase [Geobacter sulfurreducens PCA]
 gi|81703661|sp|Q74GW7|TTCA_GEOSL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|39982000|gb|AAR33462.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
          Length = 282

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 15/216 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75
              I VAVSGG DS  LL  L  +   R+  K +  A+++D      R  +     Y+ +
Sbjct: 54  GDRIAVAVSGGKDSYTLLHILEGLRR-RAPVKYELVAVTIDSGYPGFR--SDVIASYLRE 110

Query: 76  VCSRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +    H  +  +  +P +   +     +  ++   A+ +    +   H  DD +
Sbjct: 111 QGFAHHLETTDHYDIIREKRRPGSSYCSICARLKRGVLYTLAQKLGCNKLALGHHLDDFV 170

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ +         G   +     +  +    + RP +     +I  F  +         
Sbjct: 171 ETLLLNQF----FVGTLKAMAPRMLADNGETTVIRPLVYVEEREIIPFARENRFPVVCCS 226

Query: 193 SNTDDRFE--RVRVRRFVRDIDLHALYLKMKKFQDL 226
                  +  R R+++ + +++     +K    + L
Sbjct: 227 CPVCGTADLQRRRMKKLLTELEKENPAVKRSLLRAL 262


>gi|71020233|ref|XP_760347.1| hypothetical protein UM04200.1 [Ustilago maydis 521]
 gi|74700937|sp|Q4P6R3|CTU1_USTMA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|46099971|gb|EAK85204.1| hypothetical protein UM04200.1 [Ustilago maydis 521]
          Length = 396

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 80/259 (30%), Gaps = 38/259 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   +  VL++R    +    +S+D  +     D +  V    
Sbjct: 50  RGDRVAIGASGGKDSTVLAHCMK-VLNERYDYGLDLFLLSIDEGITGYRDDSLETVKRNQ 108

Query: 78  SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + ++   V+               S  +          R   +   A  +    I+T H
Sbjct: 109 QQYQLPLKVLGYGELYGWTMDDIVKSVGRKNNCTFCGVFRRQALDRGAAALGVDHIVTGH 168

Query: 127 TFDDQLETVYMRSQRDYAEK----------------------GMGLSGMCDTILYDLNLW 164
             DD  ETV M   R    +                      G G SG     +    + 
Sbjct: 169 NADDVAETVLMNVLRGDIARLERCTDIVTKGPDGSEDDQHQEGCGSSGSNGIGVGGSGIR 228

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
            S+PF+    ++I  +   + + +            R   R F++D++     ++     
Sbjct: 229 RSKPFMYAYEKEIVMYAYFKKLDYFSTECIYSPNAYRGYARTFLKDLE----AIRPSSIV 284

Query: 225 DLRVKVNNAVAMLIPKYLT 243
           D+   V  +    +   L 
Sbjct: 285 DIIQSVKQSRKTQLQNCLR 303


>gi|310798106|gb|EFQ32999.1| PP-loop family protein [Glomerella graminicola M1.001]
          Length = 842

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 15/146 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------KFSAISVDHCLRETAKDEVR 71
            P  I +AVSGG DSM L    + +       ++      K SA+ VDH LR  +  E +
Sbjct: 64  QPRRIGLAVSGGVDSMALAYLFNRLREVNPLVRVVDNPLTKISALVVDHGLRPGSDAEAQ 123

Query: 72  YVSDVCSRLR-IAHSV--VSWKNSKPQT------GLMAAAREARYALISEHAKTINATLI 122
            V+     LR +   +  V+W+    +        L +AAR ARY  +      ++   +
Sbjct: 124 GVARELRTLRYLRAHIDRVNWRAEGVEGDPAALPNLESAARRARYRRLGIFCAALHIESL 183

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM 148
             AH  DDQ ETV MR    +  +G+
Sbjct: 184 FLAHHQDDQHETVLMRLLAGHGSRGL 209



 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDI 211
           M    + D  + I RP L   ++ + +     N+ W ED +N D     R  VR  VR+ 
Sbjct: 318 MPRISVEDAGVMIYRPLLGFGKDRLVATCEANNVRWFEDSTNKDRTLTMRNAVRHMVREH 377

Query: 212 DLHALYLKMK--KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNI 259
            L A   K    +                 ++L  +  +    +   L +
Sbjct: 378 ALPAALRKDNVLRLAARCDARVRGQEHEADRWLRRYSDAEFEPNVGTLAV 427


>gi|298482648|ref|ZP_07000832.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298271111|gb|EFI12688.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 248

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +    A+ V   +  +   +  E  Y+  
Sbjct: 31  GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +            +  +          R   +   AK      I   H  DD L
Sbjct: 86  HCETYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R+
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLMMKKFDMTIIRPMCLVHEADLVELAALRH 194


>gi|299148919|ref|ZP_07041981.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|295087122|emb|CBK68645.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Bacteroides xylanisolvens XB1A]
 gi|298513680|gb|EFI37567.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 248

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +    A+ V   +  +   +  E  Y+  
Sbjct: 31  GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +            +  +          R   +   AK      I   H  DD L
Sbjct: 86  HCETYGVPFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R+
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLMMKKFDMTIIRPMCLVHEADLVELAALRH 194


>gi|327357985|gb|EGE86842.1| PP-loop ATPase superfamily protein [Ajellomyces dermatitidis ATCC
           18188]
          Length = 419

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 14/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L YP   + +  SGG DS  L   L ++ ++R    ++   +S+D  +     D +  V
Sbjct: 44  ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYSYGLELMLLSIDEGIHGYRDDSLETV 102

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V              +   + G        R   +   A  +    +
Sbjct: 103 KRNAVQYSMPLEIVGYGELYGWTMDQVVSEIGKKGNCTYCGVFRRQALDRGAAKLAIKHV 162

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    +    + +  T     ++  S+P      ++I  +  
Sbjct: 163 VTGHNADDVAETVMMNLLRGDLPRLARATSIV-TESTASDIKRSKPLKYAYEKEIVLYAH 221

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R  ++D++
Sbjct: 222 HKKLDYFSTECIYSPEAFRGSARTLIKDLE 251


>gi|239608873|gb|EEQ85860.1| PP-loop ATPase superfamily protein [Ajellomyces dermatitidis ER-3]
          Length = 421

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 73/210 (34%), Gaps = 14/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L YP   + +  SGG DS  L   L ++ ++R    ++   +S+D  +     D +  V
Sbjct: 46  ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYSYGLELMLLSIDEGIHGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V              +   + G        R   +   A  +    +
Sbjct: 105 KRNAVQYSMPLEIVGYGELYGWTMDQVVSEIGKKGNCTYCGVFRRQALDRGAAKLAIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    +    + +  T     ++  S+P      ++I  +  
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLARATSIV-TESTASDIKRSKPLKYAYEKEIVLYAH 223

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R  ++D++
Sbjct: 224 HKKLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|198434353|ref|XP_002125738.1| PREDICTED: similar to CG8078 CG8078-PA [Ciona intestinalis]
          Length = 347

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 17/204 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +  SGG DS  L   L  VL++R    +    +S+D  +     D +  V        
Sbjct: 53  VAIGASGGKDSTVLAHTLK-VLNERYNYGLDLRLLSIDEGITGYRDDSLETVKRNQQEYD 111

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +  +V+S++               +          R   +   A  +    I T H  DD
Sbjct: 112 LPLTVLSYETLYGWTMDAIVKKIGKKNNCTFCGVFRRQALDRGAMMLGVNKIATGHNADD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISW 188
             ET+ M   R    +   L      I  D    +   +PF     ++I ++   + + +
Sbjct: 172 IAETILMNILRGDIAR---LKRCTAIITGDDPSGIPRVKPFKYTYEKEIVAYAYFKKLDY 228

Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212
                       R   R +++D++
Sbjct: 229 FSTECIYSPDAYRGHARAYLKDLE 252


>gi|169607112|ref|XP_001796976.1| hypothetical protein SNOG_06610 [Phaeosphaeria nodorum SN15]
 gi|111065321|gb|EAT86441.1| hypothetical protein SNOG_06610 [Phaeosphaeria nodorum SN15]
          Length = 437

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 19/213 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V    
Sbjct: 50  RGERIAIGASGGKDSTVLASVLKTL-NERYDYGLDLVLLSIDEGIKGYRDDSLETVKRNA 108

Query: 78  SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +  +++                  + G        R   +   A  +    ++T H
Sbjct: 109 EQYGMDLTILGYDELYGWTMDQVVEQVGKKGNCTYCGVFRRQALDRGAARLGVKHVVTGH 168

Query: 127 TFDDQLETVYMRSQRDYAEKG-------MGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             DD  ETV M   R    +                    + N+  S+P      ++I  
Sbjct: 169 NADDVAETVLMNLLRGDLPRLSRTTSIITSTPSASSDPASNTNIKRSKPLKYAYEKEIVL 228

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   +++ +            R   R  +++++
Sbjct: 229 YAHHKSLDYFSTECIYSPEAFRGSARALIKNLE 261


>gi|261884707|ref|ZP_06008746.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase) [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 229

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 6/145 (4%)

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA-EKGMGLSGMCDTILYDL 161
           R+ R+    E   T N   ++ AH  +D LE ++M+  +     +  GL      I    
Sbjct: 6   RDIRHKFFEEICITFNYDPLILAHQLNDCLEWLFMQLSKGSGTVQLCGLEPTNTKIAEFE 65

Query: 162 NLW----ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217
           N+     + RP +   R +I S+L Q+NI++  D SN D +F+R  +R    D  +    
Sbjct: 66  NIKKQISVIRPLINVSRNEIISYLKQKNINYFTDISNFDFKFKRNFIRANFSDAFIEKFE 125

Query: 218 LK-MKKFQDLRVKVNNAVAMLIPKY 241
              +K F+ LR      +   I + 
Sbjct: 126 KGVIKSFEFLRADRTALLGEFIYED 150


>gi|70606217|ref|YP_255087.1| PP-loop family protein [Sulfolobus acidocaldarius DSM 639]
 gi|68566865|gb|AAY79794.1| pP-loop family protein [Sulfolobus acidocaldarius DSM 639]
          Length = 315

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 91/265 (34%), Gaps = 36/265 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E  + F  S      I VAVSGG DS  LL  ++ +   R F   +   I +   
Sbjct: 34  FERVVEKYKMFDGS----DRIGVAVSGGKDSTTLLHLMNKLAQKRGF---EIVGIHIHLG 86

Query: 62  LR---ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA---AR--------EARY 107
           +      +   + +       L + + +++ K     T   A     R          RY
Sbjct: 87  IDMGKGYSDKSLEFALKNFQMLGVKYKLINVKEKYGFTIDEAKFKIRRPICSTCGLVKRY 146

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-- 165
           + + E A+      ++T H  +D  + V              LS +   +       +  
Sbjct: 147 S-MEEIAEEEGLDTVVTGHNLNDMAQFVLSGYFSGDVNN---LSRLKPVLPPTRGYKVKK 202

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV------RVRRFVRDIDLHALYLK 219
            +P      ++I ++ +  NI +  D         RV      ++RR + +++       
Sbjct: 203 VKPLFLIYEKEILTYAILNNIPFIYDSC---PHTFRVGGATQDKIRRKLEEMEDEIPGFM 259

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTV 244
           +   Q+   K+   + ++  K   V
Sbjct: 260 LLLVQNFTDKIQEPLEVIYSKVEEV 284


>gi|331699846|ref|YP_004336085.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190]
 gi|326954535|gb|AEA28232.1| tRNA(Ile)-lysidine synthase [Pseudonocardia dioxanivorans CB1190]
          Length = 328

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 73/329 (22%), Positives = 117/329 (35%), Gaps = 37/329 (11%)

Query: 8   SVRFFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           +VR  + +L  P   A ++V  SGG+       +L   L+  +    + +A  VDH L+E
Sbjct: 16  AVRRALVALPAPVREAPVVVGCSGGA------DSLALTLAAAAELPGRVTAAIVDHGLQE 69

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +      ++       +   V       P  GL AAAR ARYA +       + + ++ 
Sbjct: 70  GSAARSAALAADLGARGVPAGVHPVVVGGPG-GLEAAARRARYAALLAARPAPD-SPVLL 127

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            HT DDQ ETV +   R    +      +     +D     +RP L  RR   R+   + 
Sbjct: 128 GHTLDDQAETVLLGLGRGSGPRS-----IAGMRPWDP--PWARPLLGVRRATTRAACAEL 180

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LKMKKFQDLRVKVNNAVAMLIP 239
             +   DP N D RF RVR+RR V  +    L        ++    LR   +   A+   
Sbjct: 181 GATAWNDPHNDDPRFTRVRLRREVLPLLEDVLAGGVAEALVRTAAQLREDGDVLDALAGE 240

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKR 299
                 +      +  +      +    LR      G        R +  + L       
Sbjct: 241 LLAAARLPEGGLRAATLSPAPQAVRRRALREWLLTSG-------VRDLTDLHLRAVDDLV 293

Query: 300 GCVSI-------GRVVIDRRANFLWITRA 321
           G           G + + RR   L + RA
Sbjct: 294 GRWRGQGGVALPGGLDLVRRDGRLSLHRA 322


>gi|255525719|ref|ZP_05392651.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296184822|ref|ZP_06853233.1| PP-loop family protein [Clostridium carboxidivorans P7]
 gi|255510621|gb|EET86929.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296050604|gb|EFG90027.1| PP-loop family protein [Clostridium carboxidivorans P7]
          Length = 245

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 17/219 (7%)

Query: 1   MFLSPI-ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           MFL  I +S+  F   +     + V +SGG DS+ LL  L  ++            +++D
Sbjct: 11  MFLKKIIQSISKF-NMIESGDRVAVGLSGGKDSVFLLFCLK-LIQQTHIKDFSLMGVNID 68

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEH 113
             L      ++  + + C+   I   +            + +    +   + R   +   
Sbjct: 69  MGL----GMDMSPLINFCNENEIPIIIEKTNIAEVIFEERKEKSPCSLCSKLRKGALVRV 124

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK  N   I   H  DD +ET++M   +   + G     +      D  + I RP +  R
Sbjct: 125 AKANNINKIALGHNTDDVIETLFMNVLK-VGKLGAFHPNIYHE---DNKMSIIRPMIYLR 180

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              I   +   N+   +     D +  R  ++  +  ++
Sbjct: 181 EPLIEKLVKDLNLPVIKSLCPEDKKTTREEMKNLLFSLE 219


>gi|193211090|ref|NP_497589.3| hypothetical protein Y71H2B.5 [Caenorhabditis elegans]
 gi|171461096|gb|AAK93869.3|AC024202_7 Hypothetical protein Y71H2B.5 [Caenorhabditis elegans]
          Length = 957

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 21/225 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK---IKFSAIS 57
           M+    + +   ++ +     +LV +SGG DS+ LL  L       +  +    +  AI+
Sbjct: 702 MYKKVTDIIHQ-LKMIRDGDKVLVCLSGGKDSLSLLHILRHYQQRCNKARSTSFELGAIT 760

Query: 58  VDHCLRETAKD-EVRYVSDVCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARYALI 110
           VD      + +   R + + C RL I +      ++      P    + A     +   +
Sbjct: 761 VD----PGSAEYNPRPLIEYCRRLNIDYFYEEQDIIGAARKTPGLRSICAFCSRMKRGRL 816

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +  A+     ++      DD  E+ ++ + ++    G   +        D  L + RP +
Sbjct: 817 AAAAQLHGWNVLAMGQHLDDLAESFFIAAFQN----GNLSTMKAQYTTKDGALRVIRPLV 872

Query: 171 RCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL 213
             R + +R+F   + +       P+  +   ER RV++ +   +L
Sbjct: 873 MVREKALRNFAEDKKLPVVAENCPACFNQATERHRVKQLLAQQEL 917


>gi|170046274|ref|XP_001850697.1| ATP-binding domain protein 3 [Culex quinquefasciatus]
 gi|167869089|gb|EDS32472.1| ATP-binding domain protein 3 [Culex quinquefasciatus]
          Length = 341

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + IE  + F R  +    + +A SGG DS  L   + ++ ++R    +K   +S+D  + 
Sbjct: 36  NTIEQGKLFERGSL----VAIAASGGKDSTVLAHVMKTL-NERYDYGLKLVLLSIDEGIS 90

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISE 112
               D +  V        +   ++ ++               ++         R   +  
Sbjct: 91  GYRDDSLETVKKNRDDYGMELKILDYEELYGWTMDSIVAKIGKSNNCTFCGVFRRQALDR 150

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  +    + T H  DD  ETV M   R    +      +        ++   +P    
Sbjct: 151 GAHMMKVACVATGHNADDIAETVLMNILRGDVARLRRCCDIKTGGNSPDSIPRVKPLKYS 210

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             ++I  +   + + +            R   R F++D++
Sbjct: 211 YEKEIVMYAHFKKLVYFSTECIYAPNAYRGHARAFLKDLE 250


>gi|326427787|gb|EGD73357.1| PP-loop domain-containing protein [Salpingoeca sp. ATCC 50818]
          Length = 1059

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 74/195 (37%), Gaps = 17/195 (8%)

Query: 2   FLSPI-ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            L PI E++R F   +     +L+ +SGG DS+ LL  LH++   R+    K +A++++ 
Sbjct: 807 LLRPIGEAIRQF-SMITDGDRVLIGLSGGKDSLTLLHCLHALQR-RAPISFKLAAVTMN- 863

Query: 61  CLRETA-KDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114
                    +   +    ++L + +       +        + + +     +  ++   A
Sbjct: 864 ---PNFPGFDPAPLKAYLAKLGVEYFFETQDLLQLAKDTKPSSICSWCSRMKRGILYTVA 920

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +     ++      DD  E+  M +  +   + M    + D      +L I RP    R 
Sbjct: 921 RREGYNVLALGQHLDDLAESFIMTAFHNGKLRTMNAHYLNDK----GDLRIIRPLAFVRE 976

Query: 175 EDIRSFLLQRNISWC 189
              R+F +   +   
Sbjct: 977 RQTRAFAVANGLPVI 991


>gi|260893554|ref|YP_003239651.1| PP-loop domain protein [Ammonifex degensii KC4]
 gi|260865695|gb|ACX52801.1| PP-loop domain protein [Ammonifex degensii KC4]
          Length = 244

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 17/179 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--V 73
           +     I V VSGG DS+ LL  L  +  D S       AI +D         EV    +
Sbjct: 14  IAPGDKIAVGVSGGKDSVALLRILAHL-RDYSHLSFSMVAIMIDPGW-----KEVDIGPL 67

Query: 74  SDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           +D CS+  I   +V         +K +    +   + R  L+   A ++    +   H  
Sbjct: 68  ADFCSKFDIPFYLVKHPIARIIAAKGENNPCSLCAKLRSGLLYSKAVSLGCRRVALGHHL 127

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           DD +ET ++         G   +      L  + + + RPF       +  F+ +  + 
Sbjct: 128 DDVIETFFLNLV----HAGYLRTFRPVVYLERMGIHLIRPFSYVPESALVHFVAREGLP 182


>gi|215405673|ref|ZP_03417854.1| cell cycle protein mesJ [Mycobacterium tuberculosis 02_1987]
 gi|218755403|ref|ZP_03534199.1| cell cycle protein mesJ [Mycobacterium tuberculosis GM 1503]
 gi|219559696|ref|ZP_03538772.1| cell cycle protein mesJ [Mycobacterium tuberculosis T17]
          Length = 294

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 104/312 (33%), Gaps = 36/312 (11%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR-IA 83
            +SGG DS+ L      +           +A+ VDH L+  +             L  + 
Sbjct: 2   GLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPGSATVAETARIQAISLGCVD 53

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  +         AA      +      +      ++ AHT DDQ ETV +   R  
Sbjct: 54  ARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLLAHTLDDQAETVLLGLGRGS 108

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +      +     YD      RP L  RR    +   +  ++  +DP NTD RF R R
Sbjct: 109 GARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTR 161

Query: 204 VRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           +R  V  +           AL       ++    ++   A  +P       R     +  
Sbjct: 162 LRTEVLPLLEDVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSA 221

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKS----GKRGCVSIGRVVI 309
           +  +   +   ++R    + GG   L     R ++R++   +          +   R+V 
Sbjct: 222 LTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVA 280

Query: 310 DRRANFLWITRA 321
            RR   L + R 
Sbjct: 281 GRRDGVLVLRRE 292


>gi|115448847|ref|NP_001048203.1| Os02g0762300 [Oryza sativa Japonica Group]
 gi|75225396|sp|Q6Z6G6|CTU1_ORYSJ RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|46805899|dbj|BAD17212.1| n-type ATP pyrophosphatase-like [Oryza sativa Japonica Group]
 gi|113537734|dbj|BAF10117.1| Os02g0762300 [Oryza sativa Japonica Group]
 gi|215741300|dbj|BAG97795.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 363

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 15/210 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +  SGG DS  L   L  + + R    +    +SVD  +     D +  V
Sbjct: 60  NLFKPGDRVAIGASGGKDSTVLAYVLSEL-NRRHKYCLDLFLLSVDEGITGYRDDSLETV 118

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS+K+           +             R   +   A  +    I
Sbjct: 119 KRNEIQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKI 178

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV +   R    +    + +  T   D  +   +PF     ++I  +  
Sbjct: 179 VTGHNADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVMYAY 236

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R F++D++
Sbjct: 237 FKKLDYFSTECIYSPNAYRGFAREFIKDLE 266


>gi|215432596|ref|ZP_03430515.1| cell cycle protein mesJ [Mycobacterium tuberculosis EAS054]
          Length = 294

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/312 (19%), Positives = 104/312 (33%), Gaps = 36/312 (11%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR-IA 83
            +SGG DS+ L      +           +A+ VDH L+  +             L  + 
Sbjct: 2   GLSGGPDSLALTAVAARLWPT--------TALIVDHGLQPGSATVAETARIQAISLGCVD 53

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY 143
             V+  +         AA      +      +      ++ AHT DDQ ETV +   R  
Sbjct: 54  ARVLCVQVGAAGGREAAAR-----SARYSALEEHRDGPVLLAHTLDDQAETVLLGLGRGS 108

Query: 144 AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +      +     YD      RP L  RR    +   +  ++  +DP NTD RF R R
Sbjct: 109 GARS-----IAGMRPYDP--PWCRPLLGVRRSVTHAACRELGLTAWQDPHNTDRRFTRTR 161

Query: 204 VRRFVRDI--------DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD 255
           +R  V  +           AL       ++    ++   A  +P       R     +  
Sbjct: 162 LRTEVLPLLEEVLGGGVAEALARTATALREDTDLIDTIAAQALPGAAVAGSRGQELSTSA 221

Query: 256 ILNIDSTLLFYLLRVSAAICGGQISLPGY--RSMERVMLFLKS----GKRGCVSIGRVVI 309
           +  +   +   ++R    + GG   L     R ++R++   +          +   R+V 
Sbjct: 222 LTALPDAVRRRVIRGWL-LAGGATGLTDRQIRGVDRLVTAWRGQGGVAVGSTLRGQRLVA 280

Query: 310 DRRANFLWITRA 321
            RR   L + R 
Sbjct: 281 GRRDGVLVLRRE 292


>gi|195028039|ref|XP_001986888.1| GH20281 [Drosophila grimshawi]
 gi|226711418|sp|B4J5B3|CTU1_DROGR RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|193902888|gb|EDW01755.1| GH20281 [Drosophila grimshawi]
          Length = 343

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 13/210 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       + VA SGG DS  L   +  +L++R    +    +S+D  +     D +  V
Sbjct: 45  RLFRRGEKVAVAASGGKDSTVLAHVMK-LLNERHDYGLDLVLLSIDEGITGYRDDSLETV 103

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                  ++   ++S++               ++         R   +   AK +    I
Sbjct: 104 KQNRDDYQMPLKILSYEELYGWTMDRIVAQIGRSNNCTFCGVFRRQALDRGAKLLGVDSI 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD  ETV M   R    +    + +  T   + ++   +P      ++I  +  
Sbjct: 164 ATGHNADDIAETVLMNILRGDTARLRRCTNI-RTGGGEDSIPRVKPLKYSYEKEIVMYAH 222

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R F++D++
Sbjct: 223 YKRLVYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|15669347|ref|NP_248152.1| hypothetical protein MJ_1157 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501587|sp|Q58558|Y1157_METJA RecName: Full=CTU1/ATPBD3 family protein MJ1157
 gi|1592323|gb|AAB99161.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 341

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 72/220 (32%), Gaps = 21/220 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I + +SGG DS+ +   L  +   +     K     VD  ++       +YV + C   
Sbjct: 84  KIGIGISGGKDSLVMAYILKELF--KHIPNAKLICFFVDEGIKGFRNIAEKYVKEFCKEY 141

Query: 81  RIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINATLIMT 124
            +   ++ +++    T                   +     R  L+++HA       +  
Sbjct: 142 NLDLKIIKFEDEIGYTLDEIVKNDYLSKLNIGKPCSFCGVVRRYLLNKHALKEGCDYLAI 201

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  +T+ M       +    +            +   +P      E+++ +    
Sbjct: 202 GHNLDDFCQTILMNYVEGNIKN---IIQFGKEFEGGGFVKRIKPLKLIPEEEVKLYAEIN 258

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
           NI +  +P        R R+++ +  ++     +K    +
Sbjct: 259 NIKYQREPCPYSSLSYRHRMKKVIEILEEEKPGVKFSILR 298


>gi|124485791|ref|YP_001030407.1| hypothetical protein Mlab_0970 [Methanocorpusculum labreanum Z]
 gi|124363332|gb|ABN07140.1| PP-loop domain protein [Methanocorpusculum labreanum Z]
          Length = 300

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     I V +SGG DS  LL  L  +         +   I+VD  +     D +   
Sbjct: 44  RMIEPGDRIAVGLSGGKDSTVLLTVLAKL-----DLDAELIPITVDEGIGGYRDDTILAA 98

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REA-------RYALISEHAKTINATLIM 123
           + +C +L +A  +VS+ +   +T     +   R+A       R   +++ A+ + AT I 
Sbjct: 99  TRLCDKLGLADRLVSFTDICGKTLDELLSNDPRQACSVCGTLRRRALNQAAREVGATKIA 158

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T H  DD+ ++V M   R    +  G        L+   L   +P  R    +  ++
Sbjct: 159 TGHCLDDEAQSVLMNYLRGDVTRVTGSYRTNADTLF---LPRIKPLCRATERETVAY 212


>gi|242066610|ref|XP_002454594.1| hypothetical protein SORBIDRAFT_04g034030 [Sorghum bicolor]
 gi|241934425|gb|EES07570.1| hypothetical protein SORBIDRAFT_04g034030 [Sorghum bicolor]
          Length = 364

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 14/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L  +    ++G +    +S+D  +     D +  V    
Sbjct: 65  AGERVAIGASGGKDSTVLAYVLSELNRHHNYG-LDLFLLSIDEGITGYRDDSLETVKRNE 123

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   +VS+K+           +             R   +   A  + A  I+T H
Sbjct: 124 IQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKADKIVTGH 183

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV +   R    +    + +  T   D  +   +PF     ++I  +   + +
Sbjct: 184 NADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVMYAYFKKL 241

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R F++D++
Sbjct: 242 DYFSTECIYSPNAYRGFAREFIKDLE 267


>gi|268552227|ref|XP_002634096.1| Hypothetical protein CBG01646 [Caenorhabditis briggsae]
 gi|226711413|sp|A8WR63|CTU1_CAEBR RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1; AltName:
           Full=Thiolation of uridine in tRNA protein 1
 gi|187038054|emb|CAP22971.1| CBR-TUT-1 protein [Caenorhabditis briggsae AF16]
          Length = 372

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 73/206 (35%), Gaps = 14/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   + ++ +DR    +    +S+D  ++    D +  V    
Sbjct: 56  RGERVAIGASGGKDSTVLAFVMKTL-NDRHDYGLDLQLLSIDEGIKGYRDDSLLAVEKNR 114

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               +  +++S+ +              +          R   +   A  I AT ++T H
Sbjct: 115 VEYGLPLTILSYNDLYGWTMDDIVAKIGKKNNCTFCGVFRRQALDRGAFKIGATKLVTGH 174

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +    + +      + +L  ++P   C   DI  +     +
Sbjct: 175 NADDMAETVLMNVLRGDIARLERCTNI--VTGEEGDLPRAKPLKYCFERDIVMYARSNQL 232

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R++VRD++
Sbjct: 233 EYFYTECIYAPNAYRGYARKYVRDLE 258


>gi|34558096|ref|NP_907911.1| hypothetical protein WS1792 [Wolinella succinogenes DSM 1740]
 gi|34483814|emb|CAE10811.1| conserved hypothetical protein-Predicted ATPase of the PP-loop
           superfamily implicated in cell cycle control [Wolinella
           succinogenes]
          Length = 248

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 17/191 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S         + +     +LV +SGG DS+  L  L + L+  +  K +F A++VD+ +
Sbjct: 9   ISTFGKTNAHFKLITENDRVLVGLSGGKDSLL-LATLLARLARHAPFKFEFKALTVDYGI 67

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAK 115
                ++  Y+ + C+   I H V          +  +  +   +     R   +   A 
Sbjct: 68  ----GEDFSYLQNYCAENGIPHEVFKTNIMEVMQEKRRENSSYCSFCSRLRRGALYSKAL 123

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +   H  DD  E+ +M    + A +      M         LW+ RP +  R  
Sbjct: 124 EGGYNKLALGHHLDDAAESFFMNFSYNGAIRS-----MPPIYRAYNGLWVIRPLIWLRER 178

Query: 176 DIRSFLLQRNI 186
            +  F+L+ N+
Sbjct: 179 QMVDFVLKNNL 189


>gi|241954188|ref|XP_002419815.1| uncharacterized protein YGL211W homologue, putative [Candida
           dubliniensis CD36]
 gi|223643156|emb|CAX42030.1| uncharacterized protein YGL211W homologue, putative [Candida
           dubliniensis CD36]
          Length = 384

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 74/206 (35%), Gaps = 13/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I +  SGG DS  L   L ++ ++R    +K   +S+D  ++    D +  V    
Sbjct: 67  RGEKIAIGASGGKDSTVLASILKTL-NERYDYGLKLVLLSIDEGIKGYRDDSLATVKRNQ 125

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126
            +  +   +VS+K+    +     A              R   +   A+ +    ++T H
Sbjct: 126 KQYDMPLEIVSYKDLYNWSMDEIVACAGIRSSCTYCGVLRRQALDRGAEKLGINHVVTGH 185

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +    + +  T      +  S+PF    +++I  +   + +
Sbjct: 186 NADDVAETVLMNLLRGDVARLEHSTNIM-TTSAGSPIKRSKPFKYTYQKEIVLYAHYKKL 244

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R  ++ ++
Sbjct: 245 DYFSTECTYAPEAFRGTARELLKSLE 270


>gi|322371601|ref|ZP_08046147.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253]
 gi|320548892|gb|EFW90560.1| PP-loop domain protein [Haladaptatus paucihalophilus DX253]
          Length = 322

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 19/218 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   L+ +SGG DS+ L   LH   ++    +I+  A+++   +       +    ++  
Sbjct: 53  PQVWLIGLSGGKDSVVLTKILHDTFAE--DPRIELVALTIHEGIEGYRDKSLDACLELTD 110

Query: 79  RLRIAHSVVSWKNS------------KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            L I H VVS++                     A     R  L+S++A+   A  ++T H
Sbjct: 111 DLDIRHEVVSYEEEFDLRMDDVVGKDPENMAACAYCGVFRRDLLSKYAEEYGANKLLTGH 170

Query: 127 TFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
             DD+ ET  M                 L+G  +    D  +  ++P      +++  + 
Sbjct: 171 NLDDEAETALMNFLEGDVAQVAKHFDASLAGFDERSDQDEFVPRAKPLRDVPEKEVALYA 230

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
              ++              R  +++ +  ++ +    +
Sbjct: 231 HLEDLPAHITECPHSSEAYRAEIQQLMLSLEENHPGTR 268


>gi|296133881|ref|YP_003641128.1| PP-loop domain protein [Thermincola sp. JR]
 gi|296032459|gb|ADG83227.1| PP-loop domain protein [Thermincola potens JR]
          Length = 261

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 85/232 (36%), Gaps = 18/232 (7%)

Query: 9   VRFFVRSLV------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           VR  +R+++          IL+ +SGG DS  L+ AL  +     F K    AI++D   
Sbjct: 10  VRKLMRAIIEFELVEPNDRILIGLSGGKDSAFLVYALGVLRRHFPF-KFDIGAITIDLGF 68

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-----PQTGLMAAAREARYALISEHAKTI 117
            +      + + D C RL +       + ++      Q    AA    R  +IS  A+  
Sbjct: 69  TDKFDR--QPLEDFCRRLDVPFFFEKTQIAEIAFSPSQPNPCAACAFFRKGIISACARAE 126

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +  AH  DD +ET  M        +    + +  T      L + +P +  R ++I
Sbjct: 127 GFNKVAFAHHLDDAVETFLMSQLFSGQIR----TFLPKTQWDRSGLALIKPLVYLREKEI 182

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           +  L              D + +R   ++ ++ +      +       +R +
Sbjct: 183 KGALRFIGFEPIPGGCPRDKKTKRETTKQLIKFLVKEHPQVFENLTAAMRRQ 234


>gi|238881677|gb|EEQ45315.1| VEG136 protein [Candida albicans WO-1]
          Length = 389

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 13/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I++  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V    
Sbjct: 66  RGEKIVIGASGGKDSTVLASILKTL-NERYDYGLNLVLLSIDEGIKGYRDDSLATVKRNQ 124

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126
            +  +   +VS+K+    +     A              R   +   A+ +    ++T H
Sbjct: 125 KQYDMPLEIVSYKDLYNWSMDEIVACAGIRSSCTYCGVLRRQALDRGAEKLGIKHVVTGH 184

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +    + +  T      +  S+PF    +++I  +   + +
Sbjct: 185 NADDVAETVLMNLLRGDVARLESSTNIM-TTSAGSPIKRSKPFKYTYQKEIVLYAHYKKL 243

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R  ++ ++
Sbjct: 244 DYFSTECTYAPEAFRGTARELLKSLE 269


>gi|322503987|emb|CBZ39074.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 322

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 77/223 (34%), Gaps = 24/223 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             I++ R F      P  + VA   SGG DS  L+  L ++ S R    I+   +SVD  
Sbjct: 42  DTIQAERLFA-----PGDV-VACGASGGKDSTVLIHLLDTL-SKRHNYGIRIELVSVDEG 94

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V    +   +   ++S+++                         R   +
Sbjct: 95  IAGYRDDSLETVKRNSACYGLPLHILSYRDIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169
            + A  + A  I T H  DD  ET+ M   R  A +   LS     +     +    +P 
Sbjct: 155 EKGAVLVKADKIATGHNADDMAETILMNLLRADAPR---LSRCTSAVSAGEGILPRVKPL 211

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                ++I  +   + + +            R   R  V+D++
Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKEAFRGTARTLVKDLE 254


>gi|310828641|ref|YP_003960998.1| hypothetical protein ELI_3066 [Eubacterium limosum KIST612]
 gi|308740375|gb|ADO38035.1| hypothetical protein ELI_3066 [Eubacterium limosum KIST612]
          Length = 236

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 21/233 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L P+         +     I V +SGG DS  LL+A+            +   I++D   
Sbjct: 5   LGPLRRAVEKYEMIRPGDRIAVGLSGGKDSTALLVAMKRFQYFSPVP-FELEGITLDMGF 63

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKT 116
                 E   +  +C+ L I +++   +       ++ +    A     +   + + A  
Sbjct: 64  -GGMDFEP--LVQLCAELDIPYTIKKTQIGPIVFEARQEKNPCALCARMKRGALHDLAIE 120

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                I   H  DD +ET ++        +G   +    T L   ++ + RP +  + +D
Sbjct: 121 RGCRKIALGHHADDAIETFFLSLF----YEGRINTFSPVTYLDRKDITLIRPLIFVKEKD 176

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERV-------RVRRFVRDIDLHALYLKMKK 222
           I      + +   +     D   +R         +R+ + ++D   L     K
Sbjct: 177 IIYNPEIKELPVIKSTCPADGHTKREDMKDMMKELRKTIPELDDRILKAIQNK 229


>gi|48477224|ref|YP_022930.1| ATPase of the PP-loop superamily [Picrophilus torridus DSM 9790]
 gi|48429872|gb|AAT42737.1| ATPases of the PP-loop superamily [Picrophilus torridus DSM 9790]
          Length = 312

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 19/228 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS+  L  L+ +LSDR    +K  A +VD  +       +   + +C  L I 
Sbjct: 53  VAISGGKDSLVTLYVLNKILSDRR--NLKIKAFTVDEGISGYRPSGIEKAARLCKSLGID 110

Query: 84  HSVVSWKNSKPQTGLM-----------AAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           H ++S+K+    T              +     R +L+++ +    A  +      DD  
Sbjct: 111 HEIISFKHEFGYTLDEIMSIDNTRISCSHCGPMRRSLMNKISMYNKADYLALGINLDDYA 170

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           +++ M   R    + + L+     I  D  +    P  +   +++  + +  NI    D 
Sbjct: 171 QSILMNVVRGDISRYIRLAPHTG-IERDGLIPRIIPLRKIPEKEVVIYAILNNI----DY 225

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            N+   + R   R   R + ++ L  K    +   VK  +    ++  
Sbjct: 226 DNSWCPYYRDAYRNEAR-MIINMLEEKTPGTRQAIVKFFDGTRDILKN 272


>gi|225719516|gb|ACO15604.1| ATP-binding domain-containing protein 3 [Caligus clemensi]
          Length = 335

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 12/206 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +   + +  SGG DS  L   + ++ +DR    +    +S+D  +     D +  V    
Sbjct: 50  HGERVAIGASGGKDSTVLAHTMKTL-NDRYNYGLDLFLLSIDEGISGYRDDSLETVKRNR 108

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               +   ++S+++              +          R   +   A  +    I T H
Sbjct: 109 DTYGLPLKILSYEDLYGWTMDRIVEEVGRKNNCTFCGVFRRQALDRGAAILEVNKIATGH 168

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +    +           +   +PF     ++I  +   + +
Sbjct: 169 NADDIAETVMMNVLRGDIGRLSRCTAPITGSGEGETIPRVKPFKYAYEKEIVMYAYFKKL 228

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R F++D++
Sbjct: 229 DYFTTECIYSPDAYRGHARAFIKDLE 254


>gi|321398807|emb|CBZ09046.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 322

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 77/223 (34%), Gaps = 24/223 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             I++ R F      P  + VA   SGG DS  L+  L ++ S R    I+   +SVD  
Sbjct: 42  DTIQAERLFA-----PGDV-VACGASGGKDSTVLIHLLDTL-SKRHNYGIRIELVSVDEG 94

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V    +   +   ++S+++                         R   +
Sbjct: 95  IAGYRDDSLETVKRNSACYGLPLHILSYRDIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169
            + A  + A  I T H  DD  ET+ M   R  A +   LS     +     +    +P 
Sbjct: 155 EKGAVLVKADKIATGHNADDMAETILMNLLRADAPR---LSRCTSAVSAGEGILPRVKPL 211

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                ++I  +   + + +            R   R  V+D++
Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKEAFRGTARTLVKDLE 254


>gi|57641491|ref|YP_183969.1| PP family ATPase [Thermococcus kodakarensis KOD1]
 gi|57159815|dbj|BAD85745.1| ATPase, PP-loop superfamily [Thermococcus kodakarensis KOD1]
          Length = 304

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 23/198 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +LV VSGG DS      L  +             + ++  + E ++   RY 
Sbjct: 42  KMLKPDEKVLVVVSGGKDSAVTAHVLKKL-------GYNIECLHINLGIGEYSEKGERYA 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124
            + C ++     +V  K            R           RY + ++ A       + T
Sbjct: 95  REQCEKIGAPLHIVRLKELLGYGIGEVRTRRPTCSYCGLTKRY-IFNKFAYDNGFDAVAT 153

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQ 183
            H  DD+  +    +  ++  + +   G      ++  L    +P       ++ ++ L 
Sbjct: 154 GHNLDDEA-SFIFNNIMNWNTQYLAKQGPVTPSQFNGKLVKKVKPLYEVTEREVVAYALA 212

Query: 184 RNISWCEDPSNTDDRFER 201
             I +  D       + R
Sbjct: 213 NGIEYEIDECP----YAR 226


>gi|325297688|ref|YP_004257605.1| PP-loop domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324317241|gb|ADY35132.1| PP-loop domain protein [Bacteroides salanitronis DSM 18170]
          Length = 255

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 74/229 (32%), Gaps = 22/229 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77
              ILV +SGG DS+ LL  L    S     +    A  V   +   A + +  Y+    
Sbjct: 28  GDKILVGLSGGKDSLALLELLAK-RSRIYKPRFSVVAAHV--VMSNIAYESDTGYLRTFS 84

Query: 78  SRLRIAH--SVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             L +       S+  S   +          R   +   AK      I   H  DD LET
Sbjct: 85  EALGVPFVGYEASFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHQDDILET 144

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-------IS 187
           + M        +G   +     ++   ++ I RP       ++      R          
Sbjct: 145 LLMNMT----FQGAISTMPPRLVMRKFDMTIIRPLCLVHEAELSELARIRGYHKQLKNCP 200

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           + +D   TD +     V R +  ++  A Y       +++  +  A A 
Sbjct: 201 YEKDSYRTDMK----EVLRTLERMNPEARYSLWNSMTNVQADLLPAYAE 245


>gi|50303243|ref|XP_451563.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74607581|sp|Q6CWX6|CTU1_KLULA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|49640695|emb|CAH01956.1| KLLA0B00737p [Kluyveromyces lactis]
          Length = 371

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 17/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I V  SGG DS  L   L  +L+DR    ++   +S+D  +     D +  V    
Sbjct: 64  RGERIAVGASGGKDSTVLAYVLK-LLNDRHDYGVEIVLLSIDEGIVGYRDDSLATVKRNQ 122

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126
            +  +   +VS+K+    T     A              R   +   A  +    ++T H
Sbjct: 123 VQYDLPLEIVSYKDLYNWTMDEIVACAGIRNSCTYCGVFRRQALDRGAAKLGIKHVVTGH 182

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +   L      +       I R  PF    +++I  +   +
Sbjct: 183 NADDMAETVLMNILRGDVAR---LEKSTSILTQSSGSPIKRSKPFKYSYQKEIVLYAHYK 239

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +     +      R   R  +++++
Sbjct: 240 KLDYFSTECSYAPEAFRGTARELMKNLE 267


>gi|326791319|ref|YP_004309140.1| PP-loop domain protein [Clostridium lentocellum DSM 5427]
 gi|326542083|gb|ADZ83942.1| PP-loop domain protein [Clostridium lentocellum DSM 5427]
          Length = 242

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 85/234 (36%), Gaps = 27/234 (11%)

Query: 9   VRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DH 60
           VR  V+    +     I + +SGG DS+ L +AL  +         +   I+V     + 
Sbjct: 10  VRRAVQDYNMIAEGDRIAIGISGGKDSLILALALSHLKRFYP-KSFEIMGITVSLGFDNF 68

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHA 114
            L E        V      L++   V + +        + ++   +   + R   + E A
Sbjct: 69  DLSE--------VGSFFDTLQVPFYVCNTQIAQIIFEERKESNPCSLCSKMRKGALYEEA 120

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +  T I   H  DD  ET+ M        +G   +    T +  ++L I RP +    
Sbjct: 121 KEMGCTKIALGHNKDDINETLLMSLF----YEGRIHTMAPVTYMDQVDLHIIRPLIYAPE 176

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
           +DIR F+ +      + P   D + +R   +  +  +      L    F  ++ 
Sbjct: 177 KDIRGFVKKEGFPVVKSPCPADGQTKRETTKELISSLQRDIPRLPEHLFGAIQR 230


>gi|167762625|ref|ZP_02434752.1| hypothetical protein BACSTE_00982 [Bacteroides stercoris ATCC
           43183]
 gi|167699731|gb|EDS16310.1| hypothetical protein BACSTE_00982 [Bacteroides stercoris ATCC
           43183]
          Length = 253

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    S     +    A  V   +  +   +  +  Y+  
Sbjct: 31  GDKILIGLSGGKDSLALVELLAR-RSRILKPRFSVVAAHVVMRN--ISYQSDTD--YLRS 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +   +   +   ++  +          R   +   AK      I   H  DD L
Sbjct: 86  YAESQGVPFVLYETEFDASTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   S     ++   ++ I RP       D+      RN
Sbjct: 146 ETLLMNIT----YQGAFGSMPPRLVMKKFDMTIIRPMCLVHESDLAELAAIRN 194


>gi|254168734|ref|ZP_04875576.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
 gi|289596819|ref|YP_003483515.1| PP-loop domain protein [Aciduliprofundum boonei T469]
 gi|197622360|gb|EDY34933.1| conserved hypothetical protein TIGR00269, putative
           [Aciduliprofundum boonei T469]
 gi|289534606|gb|ADD08953.1| PP-loop domain protein [Aciduliprofundum boonei T469]
          Length = 308

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 19/202 (9%)

Query: 2   FLSPIE-SVRFFVR---SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           FL  I+  V+  +R          IL+AVSGG DSM  +  +H +        ++  A++
Sbjct: 26  FLEFIDRKVKREIREQAHFKKGDKILIAVSGGKDSMLTMYQMHKIFGKWR--DLELVAVT 83

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREAR 106
           VD  + +  ++  +  +     L I H V+++K               +          R
Sbjct: 84  VDEGIGDFRRNCAKVANIYARELGIEHEVITFKEYLGITTDDVARVDKELKPCTYCGVFR 143

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             +++ +AK I A  ++     DD  +++ M   R    +   L+         +   I 
Sbjct: 144 RKVLNMYAKEIGANYLILGLNLDDIAQSIIMNITRGDTARLARLAPHKKIREGFIPRII- 202

Query: 167 RPFLRCRREDIRSFLLQRNISW 188
            P  R R  ++R ++   NI +
Sbjct: 203 -PLRRVRENEVRLYMNLANIPY 223


>gi|269123992|ref|YP_003306569.1| PP-loop domain-containing protein [Streptobacillus moniliformis DSM
           12112]
 gi|268315318|gb|ACZ01692.1| PP-loop domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 283

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 13/173 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I +AVSGG DS+ L+     +  D+ F   +F A+S++   RE    ++++      
Sbjct: 50  GDKIAIAVSGGKDSLLLVKLFQELKKDKRF-NFEFKALSLNPGFREE---DLKHFKFNLK 105

Query: 79  RLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L I   ++    WK +             + R  ++ ++ + +    +   H FDD +E
Sbjct: 106 ELNIDCDIIDTNIWKVANEMANEYPCFLCAKMRRGILYKNIEKMGYNKLALGHHFDDVIE 165

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T  +        K    + +        NL + RP +    EDI  F  +  I
Sbjct: 166 TTLINLFYGGTLK----TMLPKMPSTSGNLTLIRPMVNVHEEDIIKFTKKNGI 214


>gi|71402808|ref|XP_804271.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70867153|gb|EAN82420.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 329

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 79/228 (34%), Gaps = 19/228 (8%)

Query: 23  LVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +VA   SGG DS  L+  +  +L++R    ++   +S+D  +     D ++ V    +  
Sbjct: 54  VVACGASGGKDSTVLMHLMK-LLNERHGYDVQILLLSIDEGITGYRDDSLKTVHRNSAEY 112

Query: 81  RIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +   V+S+K                          R   +   A  + AT I+T H  D
Sbjct: 113 ELPLRVISYKELYGWTMDEVVRLSGLRNSCTFCGVFRRQALDRGAALLGATKIVTGHNAD 172

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  ET+ M   R    +             D  +   +P      ++I  +   + + + 
Sbjct: 173 DLAETILMNILRADLPRLS--RCTSAITAGDGLIPRVKPLKYAYEKEIVLYAHLKKLDYF 230

Query: 190 EDPSNTDDRFERVRVR---RFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
               +      R   R   + V  +    +   ++  + LRVK   +V
Sbjct: 231 TTECSYSREAFRSEARTLLKEVEKLQPRCILDTIRSGERLRVKERESV 278


>gi|85096263|ref|XP_960229.1| VEG136 protein [Neurospora crassa OR74A]
 gi|28921712|gb|EAA30993.1| VEG136 protein [Neurospora crassa OR74A]
 gi|39979201|emb|CAE85572.1| conserved hypothetical protein [Neurospora crassa]
          Length = 403

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L YP   + +  SGG DS  L   L ++ ++R    ++   +S+D  ++    D +  V
Sbjct: 46  NLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLELVLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V               +  + G        R   +   AK ++   +
Sbjct: 105 KRNAVQYDMPLKIVGYDELYGWTMDQVVETIGKKGNCTYCGVFRRQALDRGAKMLDIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ET+ M   R    +   L+   + +  D +  + R  P      ++I  +
Sbjct: 165 VTGHNADDVAETILMNLLRGDMGR---LARSTNIVTGDDSSDVKRSKPLKYAYEKEIVMY 221

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R  ++ ++
Sbjct: 222 AYHKKLDYFSTECIYSPEAFRGTARALIKQLE 253


>gi|119113899|ref|XP_314122.3| AGAP005220-PA [Anopheles gambiae str. PEST]
 gi|226711467|sp|Q7Q9I4|CTU1_ANOGA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|116128341|gb|EAA09344.3| AGAP005220-PA [Anopheles gambiae str. PEST]
          Length = 342

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 71/210 (33%), Gaps = 13/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +A SGG DS  L   + ++L+ R    +    +S+D  +     D ++ V
Sbjct: 45  QLFRPGEKVAIAASGGKDSTVLAHVM-NLLNKRYNYGLDLVLLSIDEGITGYRDDSLKTV 103

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +       +   V+S++               ++         R   +   A+ +    +
Sbjct: 104 AQNRDDYGMPLRVLSYQELYGWTMDRIVAEIGRSNNCTFCGVFRRQALDRGARLMEVDCV 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD  ETV M   R    +      +         +   +P      ++I  +  
Sbjct: 164 ATGHNADDIAETVIMNILRGDTARLRRCCDIKTGSKEADTIPRVKPLKYSYEKEIVMYAH 223

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R F++D++
Sbjct: 224 FKKLVYFSTECVFAPNAYRGHARAFLKDLE 253


>gi|62751601|ref|NP_001015743.1| cytoplasmic tRNA 2-thiolation protein 1 [Xenopus (Silurana)
           tropicalis]
 gi|82179029|sp|Q5FW05|CTU1_XENTR RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|58476345|gb|AAH89678.1| MGC107918 protein [Xenopus (Silurana) tropicalis]
          Length = 341

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 15/210 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L  VL++R    +    +SVD  +     D +  V
Sbjct: 45  KLFNPGEKVGIGASGGKDSTVLAHVLK-VLNERYAYGLDLILVSVDEGISGYRDDSLETV 103

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS++                          R   +   A  +    I
Sbjct: 104 KRNQQQYELPLKIVSYQELYGWTMDQIVKQVGLKNNCTFCGVFRRQALDRGAMMLGVNKI 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD  ETV M   R    +         T   +  +   +P      ++I  +  
Sbjct: 164 CTGHNADDIAETVLMNFLRGDIARLR--RCTSITTGSEGAIPRCKPLKYAYEKEIVLYAY 221

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R F++D++
Sbjct: 222 FKKLDYFSTECIYSPNAYRGHARAFLKDLE 251


>gi|293400608|ref|ZP_06644753.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305634|gb|EFE46878.1| ExsB family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 315

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 20/204 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V VSGG DSM LL ALH       F   +F  + +   L      E + V+  C 
Sbjct: 23  GDRIGVGVSGGKDSMVLLTALHMYAK---FCDRRFEVVGIHIKL-GFPNMEFQEVTQFCE 78

Query: 79  RLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            L I           ++     K      +   + + A +++ AK ++   +   H  DD
Sbjct: 79  HLGIEFHQIDSKVYEILKRNLDKNGRIRCSLCSKFKKATVNQAAKDLHCNKVAFGHHSDD 138

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+ M +       G   + +    L + ++   RP +     DI +  +  +I + +
Sbjct: 139 AIETLLMNAIHG----GKLATFLPKMHLSNDDITFIRPLIYAHENDILNAQMLNDIPFVK 194

Query: 191 DPSNTDDRFERVRVRRFVRDIDLH 214
             +  +D +     R+ ++D+  H
Sbjct: 195 -STCPNDGYTE---RQAMKDMLNH 214


>gi|154148598|ref|YP_001406280.1| PP-loop family protein [Campylobacter hominis ATCC BAA-381]
 gi|153804607|gb|ABS51614.1| PP-loop family protein [Campylobacter hominis ATCC BAA-381]
          Length = 243

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 17/183 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       IL+ +SGG DS+ L   L    +  S  K +F A+++ + + E        +
Sbjct: 18  KMFEEGDRILLGLSGGKDSLVLAHILKH-FNSVSPLKWEFKAVTLSYGINEN----FEPL 72

Query: 74  SDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                   I H ++         +  +P T   +     R   +  +A       +  AH
Sbjct: 73  KKHLKEFEIPHDIIESNIFEFGKEKIRPNTTFCSFCSRMRRGYLYSYALKNGFNKLALAH 132

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  E+ +M         G  L  +      +  + I RP +  R   IR   ++  +
Sbjct: 133 HLDDAAESFFMNL----GFNGA-LRTLAPKYKAENQIVIIRPLILARERQIRDCAIKNEM 187

Query: 187 SWC 189
              
Sbjct: 188 PII 190


>gi|41615304|ref|NP_963802.1| hypothetical protein NEQ523 [Nanoarchaeum equitans Kin4-M]
 gi|40069028|gb|AAR39363.1| NEQ523 [Nanoarchaeum equitans Kin4-M]
          Length = 324

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 97/264 (36%), Gaps = 37/264 (14%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++++ F  ++  P   + VAVSGG DS+ LL  L     +      +   +++D  ++  
Sbjct: 48  KAIKEF--NMFSPGDRVAVAVSGGKDSVSLLHFLTKHKDELELK--EVVGLAIDEGIKGY 103

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA---------------AAREARYALI 110
               + Y+ D   +  +   ++S+K     T                        R  L+
Sbjct: 104 RDVTLNYLKDFAKKHNLKIKIISFKEEIGLTLDEMFELTKKYNLGYWPCTYCGVFRRWLL 163

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +++A      ++ T H  +D+ +TV +       +       +     ++  +   +PF 
Sbjct: 164 NKYAIEH-FDVLATGHNLNDEAQTVILNLAEHNIKDLAKGGPVTGIKRHNKFIKRVKPFY 222

Query: 171 RCRRED--IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
               ++  I S + + N+ + E P      + R   R +VRD+        + K + +R 
Sbjct: 223 YITEKETTIYSIVNKLNVPYIECP------YARGAFRIYVRDL--------LYKMEHVRE 268

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAI 252
              N +   +     +  R    +
Sbjct: 269 LHENIIKKYLSFRDKLQKRYNFEL 292


>gi|152964498|ref|YP_001360282.1| tRNA(Ile)-lysidine synthetase [Kineococcus radiotolerans SRS30216]
 gi|151359015|gb|ABS02018.1| tRNA(Ile)-lysidine synthetase [Kineococcus radiotolerans SRS30216]
          Length = 324

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 111/301 (36%), Gaps = 23/301 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG+     L    +   +     ++   ++VDH L   +      V +    L 
Sbjct: 20  VLVACSGGA---DSLALAAATAVEAPAAGLRAGLVTVDHGLHPASATVAATVLEQGRGLG 76

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +     +  +     G  AAAR ARYA +   A+ + A  ++  HT DDQ ETV +   R
Sbjct: 77  LDPVRATRVDVGRTGGPEAAARTARYAALRAAAEELGALAVLLGHTLDDQAETVLLGLAR 136

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
               +   L+GM             RP L   R  +R+      +    DP+N D    R
Sbjct: 137 GSGTR--SLAGMPAVR-----GPFRRPLLGVERAVVRAACAAEGLEPWADPANADRALAR 189

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH--MRSIIAISQDILNI 259
            RVR  V  +    L   + +      +     A  + +            A   D+L  
Sbjct: 190 ARVRHDVLPLLEDRLGPGVARALARTARAARDDADALDEIAAASDPFTGGAAAVADLLPA 249

Query: 260 DSTLLFYLLRVSAAICG---GQISLPGYRSMERVML--------FLKSGKRGCVSIGRVV 308
              L    LR +A   G   G ++     ++E ++L         L  G  G  + GR+V
Sbjct: 250 RPALRRRWLRAAALGAGCPAGALTAAHVDALEALLLDWRGQGPVHLPGGASGVRTCGRLV 309

Query: 309 I 309
           +
Sbjct: 310 L 310


>gi|225711790|gb|ACO11741.1| ATP-binding domain-containing protein 3 [Caligus rogercresseyi]
          Length = 335

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 13/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   + ++ +DR    +    +S+D  +     D +  V
Sbjct: 46  KLFTPGERVAIGASGGKDSTVLAHTMKTL-NDRYNYGLDLFLLSIDEGISGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                   +   ++S+++              +          R   +   A  +    I
Sbjct: 105 KRNRDTYGLPLKILSYQDLYGWTMDRIVEEVGRKNNCTFCGVFRRQALDRGAALLAVDKI 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD  ETV M   R    +    +           +   +PF     ++I  +  
Sbjct: 165 ATGHNADDIAETVIMNVLRGDIGRLSRCAAPITGSGEGETIPRVKPFKYAYEKEIVMYAY 224

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R F++D++
Sbjct: 225 FKKLDYFSTECIYSPEAYRGHARAFIKDLE 254


>gi|300123916|emb|CBK25187.2| unnamed protein product [Blastocystis hominis]
          Length = 1073

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 16/192 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++  F   L     +++ +SGG DS+ +L  L  +   RS  K + + ++VD    +T 
Sbjct: 787 QAIGHF-EMLKEGDRVMLGLSGGKDSLTMLHCLLQLQR-RSPTKFELACVTVD---PQTT 841

Query: 67  KDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTG-LMAAAREARYALISEHAKTINAT 120
             +   + D C  L + +      V++    K + G + +     +  ++    +     
Sbjct: 842 GFDPSPLRDYCKALGVKYFYESRAVIALAKKKLKNGSICSWCSRMKRGILYSTMRREKYN 901

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +++ A   DD  E+  M    +   + M    +      + ++ + RPF+  R + +R F
Sbjct: 902 VLVLAQHLDDLAESFLMSVFHNGVLRTMKACYLNK----EEDIRVIRPFVYVREKQLREF 957

Query: 181 LLQRNISWCEDP 192
               N+    D 
Sbjct: 958 AKSMNLP-IIDE 968


>gi|212696526|ref|ZP_03304654.1| hypothetical protein ANHYDRO_01064 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676462|gb|EEB36069.1| hypothetical protein ANHYDRO_01064 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 143

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             +    K      I  AH  DDQ ETV MR  R     G+             N  I R
Sbjct: 2   NFLIRLKKNYKNAKIAVAHNMDDQAETVLMRIIRGSGLDGLKAMDYK-------NGPIIR 54

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
           P +  ++  I  FL    I +  D +N    + R ++R  +  
Sbjct: 55  PIMDFKKSQILKFLDYNKIDYHIDYTNLQRDYTRNKIRLDIIP 97


>gi|307718371|ref|YP_003873903.1| PP-loop domain-containing protein [Spirochaeta thermophila DSM
           6192]
 gi|306532096|gb|ADN01630.1| PP-loop domain protein [Spirochaeta thermophila DSM 6192]
          Length = 276

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 78/217 (35%), Gaps = 14/217 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYV 73
           L     +L+ +SGG DS+ + + L S+            A+ ++    E   + +E   +
Sbjct: 38  LREGDRVLLGISGGKDSLVMALVL-SLRRRWLPIHYHLEAVHLN--WEEYPISDEESARL 94

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +     + +  + ++      +   Q      AR  R   +  + K  +  ++   H  D
Sbjct: 95  AAYFEAIDVPFTQITTTMFPGHYDGQFNCYLCARN-RKRHLFTYMKEYDIPILALGHHLD 153

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET  +      A +G   + M     +     + RP        +R+ + +  +   
Sbjct: 154 DIVETTLINM----AMRGRLFTMMPVQPFFGGLFTLIRPLCEVPESQVRTAVEKLGLPVV 209

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           +      D   R+RV+  V  +       + K ++ L
Sbjct: 210 KPDCPYKDTNLRLRVKPLVEQLATLDPLAREKIYRSL 246


>gi|297828145|ref|XP_002881955.1| hypothetical protein ARALYDRAFT_483552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327794|gb|EFH58214.1| hypothetical protein ARALYDRAFT_483552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 355

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 14/222 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I  V    R       + +  SGG DS  L   L  + + R    +    +S+D  
Sbjct: 42  FEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSIDEG 100

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V     +  +   +VS+K+                         R   +
Sbjct: 101 ITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 160

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              A  +    ++T H  DD  ETV +   R    +         T   D  +   +PF 
Sbjct: 161 DRGAALLKVDKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 218

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
               ++I  +   + + +            R   R F++D++
Sbjct: 219 YTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLE 260


>gi|222537719|ref|NP_660275.2| cytoplasmic tRNA 2-thiolation protein 1 [Homo sapiens]
 gi|74713747|sp|Q7Z7A3|CTU1_HUMAN RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cancer-associated gene protein; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|31075485|gb|AAP42277.1| cancer-associated gene protein [Homo sapiens]
 gi|119592390|gb|EAW71984.1| ATP binding domain 3 [Homo sapiens]
 gi|158255782|dbj|BAF83862.1| unnamed protein product [Homo sapiens]
          Length = 348

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 20/215 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L ++        I    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRALAPRLG---ISLQLVAVDEGIGGYRDAALAAV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +R  +  +VV++++      + A AR                  R   + E A+ +
Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT I+T H  DD  ETV M   R  A +     G+         L   RP     ++++
Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQFASQKEV 221

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +   R + +  +         R   R  ++ ++
Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256


>gi|157877802|ref|XP_001687200.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68130275|emb|CAJ09587.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 322

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 24/223 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             I++ R F      P  + +A   SGG DS  L+  L ++ + R    I+   +S+D  
Sbjct: 42  DTIQAERLFA-----PGDV-IACGASGGKDSTVLIHLLDTL-NKRHDYGIRIELVSIDEG 94

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V    +   +   ++S+++                         R   +
Sbjct: 95  IAGYRDDSLETVKRNSTCYGLPLHILSYRDIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169
            + A  + A  I T H  DD  ET+ M   R  A +   LS     +     +    +P 
Sbjct: 155 EKGAVLVKADKIATGHNADDMAETILMNLLRADAPR---LSRCTSAVSAGEGILPRVKPL 211

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                ++I  +   + + +            R  VR  V+D++
Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKDAFRGTVRTLVKDLE 254


>gi|157128941|ref|XP_001661559.1| cancer-associatedprotein protein [Aedes aegypti]
 gi|122116943|sp|Q16QI1|CTU1_AEDAE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|108872434|gb|EAT36659.1| cancer-associatedprotein protein [Aedes aegypti]
          Length = 341

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + IE  + F R  V    + +A SGG DS  L   L  VL++R    +K   +S+D  + 
Sbjct: 39  NTIEQNKLFRRGDV----VAIAASGGKDSTVLAHVLK-VLNERYDYGLKLVLLSIDEGIT 93

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISE 112
               D +  V        +   ++S+                ++         R   +  
Sbjct: 94  GYRDDSLETVKRNRDDYGMELKILSYDELYGWTMDKIVSKIGRSNNCTFCGVFRRQALDR 153

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+ +    + T H  DD  ETV M   R    +      +        ++   +P    
Sbjct: 154 GARLMEVDCVATGHNADDIAETVLMNILRGDTARLRRCCDIKTGGKDADSIPRVKPLKYA 213

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             ++I  +   + + +            R   R F++D++
Sbjct: 214 YEKEIVMYAHFKKLVYFSTECVFAPNAYRGHARAFLKDLE 253


>gi|319949370|ref|ZP_08023439.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4]
 gi|319436953|gb|EFV92004.1| tRNA(Ile)-lysidine synthetase [Dietzia cinnamea P4]
          Length = 223

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 80/219 (36%), Gaps = 26/219 (11%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++ AHT DDQ ETV +   R    + +      D           RP L  R  D R+  
Sbjct: 9   VLLAHTLDDQAETVLLGLGRGSGARSLRGMAAWDAPW-------GRPLLGVRAADTRAAC 61

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
           L   ++W +DP NTD  + RVRVRR V  +    L   + +      ++       + + 
Sbjct: 62  LGLGLTWWDDPHNTDPTYTRVRVRREVLPLLEEVLGGGVAEGLARTAELARVDDDELDRL 121

Query: 242 L-TVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL----- 294
              V +    A+    L  + + +L  +LR      G  ++ P Y  +  V   +     
Sbjct: 122 AGDVPVGDDGALDVGRLERLPAAVLTRVLRRWLLSRG--VTSPTYAHLTAVAALVTDWRG 179

Query: 295 ----------KSGKRGCVSIGRVVIDRRANFLWITRAVR 323
                      +G RG     R+V  RR   L +     
Sbjct: 180 QGGVAVGGTGPAGTRGAGPTARLVARRRHGKLVLENERA 218


>gi|71408111|ref|XP_806478.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70870240|gb|EAN84627.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 329

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 71/203 (34%), Gaps = 16/203 (7%)

Query: 23  LVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +VA   SGG DS  L+  +  +L++R    ++   +S+D  +     D ++ V    +  
Sbjct: 54  VVACGASGGKDSTVLMHLMK-LLNERHGYGVQILLLSIDEGITGYRDDSLKTVHRNSAEY 112

Query: 81  RIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +   V+S+K                          R   +   A  + AT I+T H  D
Sbjct: 113 ELPLRVMSYKELYGWTMDEVVRLSGLRNSCTFCGVFRRQALDRGAALLGATKIVTGHNAD 172

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  ET+ M   R    +             D  +   +P      ++I  +   + + + 
Sbjct: 173 DLAETILMNILRADLPRLS--RCTSAITAGDGLIPRVKPLKYAYEKEIVLYAHLKKLDYF 230

Query: 190 EDPSNTDDRFERVRVRRFVRDID 212
               +      R   R  +++++
Sbjct: 231 TTECSYSREAFRSEARTLLKEME 253


>gi|302565142|ref|NP_001181634.1| cytoplasmic tRNA 2-thiolation protein 1 [Macaca mulatta]
          Length = 348

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 20/215 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L ++        I    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRALTPRLG---ISLQLVAVDEGIGGYRDAALAAV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +R  +  +VV++++      + A AR                  R   + E A+ +
Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT I+T H  DD  ETV M   R  A +     G+         L   RP     ++++
Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQFASQKEV 221

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +   R + +  +         R   R  ++ ++
Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256


>gi|58267828|ref|XP_571070.1| mitochondrion protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134112329|ref|XP_775140.1| hypothetical protein CNBE4140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|74684970|sp|Q5KGC1|CTU1_CRYNE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|50257792|gb|EAL20493.1| hypothetical protein CNBE4140 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227304|gb|AAW43763.1| mitochondrion protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 363

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 14/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L SVL+ R    +    +S+D  +     D +  V    
Sbjct: 51  RGERVAIGASGGKDSTVLAHVL-SVLNKRYDYGLDLYLLSIDEGITGYRDDSLETVKQNQ 109

Query: 78  SRLRIAHSVVS------WKNSK-----PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   +   ++S      W   K      +          R   +   A  +    I+T H
Sbjct: 110 AEYGLPLKILSYSELYGWTMDKIVEQVGKKNNCTFCGVFRRQALDRGAAQLGVDHIVTGH 169

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +         T   +  +  S+PF     ++I  +   + +
Sbjct: 170 NADDIAETVLMNIMRGDIARLA--RCTAVTTQSEDTIKRSKPFKYAYEKEIVMYAYFKKL 227

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
           ++            R   R F++D++
Sbjct: 228 TYFSTECIYSPDAYRGHARVFLKDLE 253


>gi|261332966|emb|CBH15961.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 462

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 73/212 (34%), Gaps = 17/212 (8%)

Query: 15  SLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            L  P  I VA   SGG DS  L+  +  +L+++    I+   +S+D  +     D ++ 
Sbjct: 173 KLFKPGDI-VACGASGGKDSTVLIHLMK-LLNEQHEYGIQLLLLSIDEGIAGYRDDSLKT 230

Query: 73  VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121
           V        ++  V+S+K                          R   +   A  + AT 
Sbjct: 231 VHRNAEVYNLSLRVLSYKELYGWTMDEVVKVTGLRSSCTYCGVFRRQALDRGAAMLGATK 290

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++T H  DD  ET+ M   R    +             +  L   +P      ++I  + 
Sbjct: 291 VVTGHNADDLAETILMNILRGDLPRLS--RCTSAITSGESLLPRVKPLKYAYEKEIVLYA 348

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213
             + + +            R   R  +++I++
Sbjct: 349 HFKKLDYFTTECTYSKEAFRSEARTLLKNIEI 380


>gi|68466155|ref|XP_722852.1| hypothetical protein CaO19.12104 [Candida albicans SC5314]
 gi|68466448|ref|XP_722706.1| hypothetical protein CaO19.4634 [Candida albicans SC5314]
 gi|74587732|sp|Q5AML2|CTU1_CANAL RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|46444696|gb|EAL03969.1| hypothetical protein CaO19.4634 [Candida albicans SC5314]
 gi|46444852|gb|EAL04124.1| hypothetical protein CaO19.12104 [Candida albicans SC5314]
          Length = 395

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 73/206 (35%), Gaps = 13/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V    
Sbjct: 66  RGEKIAIGASGGKDSTVLASILKTL-NERYDYGLNLVLLSIDEGIKGYRDDSLATVKRNQ 124

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126
            +  +   +VS+K+    +     A              R   +   A+ +    ++T H
Sbjct: 125 KQYDMPLEIVSYKDLYNWSMDEIVACAGIRSSCTYCGVLRRQALDRGAEKLGIKHVVTGH 184

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +    + +  T      +  S+PF    +++I  +   + +
Sbjct: 185 NADDVAETVLMNLLRGDVARLESSTNIM-TTSAGSPIKRSKPFKYTYQKEIVLYAHYKKL 243

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R  ++ ++
Sbjct: 244 DYFSTECTYAPEAFRGTARELLKSLE 269


>gi|226711431|sp|B3LHQ7|CTU1_YEAS1 RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1; AltName:
           Full=Needs CLA4 to survive protein 6; AltName:
           Full=Thiolation of uridine in cytoplasmic tRNA protein 1
 gi|226711432|sp|A6ZTX8|CTU1_YEAS7 RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1; AltName:
           Full=Needs CLA4 to survive protein 6; AltName:
           Full=Thiolation of uridine in cytoplasmic tRNA protein 1
 gi|151943606|gb|EDN61916.1| protein with a role in urmylation and in invasive and pseudohyphal
           growth [Saccharomyces cerevisiae YJM789]
 gi|190407148|gb|EDV10415.1| VEG136 protein [Saccharomyces cerevisiae RM11-1a]
 gi|259146303|emb|CAY79560.1| Ncs6p [Saccharomyces cerevisiae EC1118]
          Length = 359

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 17/210 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 + V  SGG DS  L   L  +L+DR    I+   +S+D  +     D +  V  
Sbjct: 64  FQRGEKVAVGASGGKDSTVLAHMLK-LLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKR 122

Query: 76  VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +   + S+K+                         R   +   A  +  + ++T
Sbjct: 123 NQQQYGLPLEIFSFKDLYDWTMDEIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVT 182

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182
            H  DD  ETV M   R    +   L      I       I R  PF    +++I  +  
Sbjct: 183 GHNADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAH 239

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + +            R   R ++++++
Sbjct: 240 YMKLDYFSTECTYAPEAFRGTAREYMKNLE 269


>gi|50593215|ref|NP_011304.2| Ncs6p [Saccharomyces cerevisiae S288c]
 gi|115502422|sp|P53088|CTU1_YEAST RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1; AltName:
           Full=Needs CLA4 to survive protein 6; AltName:
           Full=Thiolation of uridine in cytoplasmic tRNA protein 1
 gi|285812005|tpg|DAA07905.1| TPA: Ncs6p [Saccharomyces cerevisiae S288c]
          Length = 359

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 17/210 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 + V  SGG DS  L   L  +L+DR    I+   +S+D  +     D +  V  
Sbjct: 64  FQRGEKVAVGASGGKDSTVLAHMLK-LLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKR 122

Query: 76  VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +   + S+K+                         R   +   A  +  + ++T
Sbjct: 123 NQQQYGLPLEIFSFKDLYDWTMDEIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVT 182

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182
            H  DD  ETV M   R    +   L      I       I R  PF    +++I  +  
Sbjct: 183 GHNADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAH 239

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + +            R   R ++++++
Sbjct: 240 YMKLDYFSTECTYAPEAFRGTAREYMKNLE 269


>gi|1655726|gb|AAC49498.1| unknown [Saccharomyces cerevisiae]
          Length = 317

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 17/210 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 + V  SGG DS  L   L  +L+DR    I+   +S+D  +     D +  V  
Sbjct: 64  FQRGEKVAVGASGGKDSTVLAHMLK-LLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKR 122

Query: 76  VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +  +   + S+K+                         R   +   A  +  + ++T
Sbjct: 123 NQQQYGLPLEIFSFKDLYDWTMDEIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVT 182

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182
            H  DD  ETV M   R    +   L      I       I R  PF    +++I  +  
Sbjct: 183 GHNADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAH 239

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + +            R   R ++++++
Sbjct: 240 YMKLDYFSTECTYAPEAFRGTAREYMKNLE 269


>gi|118151018|ref|NP_001071422.1| cytoplasmic tRNA 2-thiolation protein 1 [Bos taurus]
 gi|122145554|sp|Q0VC66|CTU1_BOVIN RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|111305255|gb|AAI20330.1| ATP binding domain 3 [Bos taurus]
 gi|296477482|gb|DAA19597.1| cytoplasmic tRNA 2-thiolation protein 1 [Bos taurus]
          Length = 347

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 20/215 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L  +        I    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---ISLHLVAVDEGIGGYRDAALAAV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +R  +  +VV++ +      + A AR                  R   + E A+ +
Sbjct: 103 RRQAARWELPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLV 162

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT ++T H  DD  ETV M   R  A +     G+         L   RP     ++++
Sbjct: 163 GATHVVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQLASQKEV 221

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +   R + +  +         R   R  ++ ++
Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKMLE 256


>gi|154417532|ref|XP_001581786.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121916016|gb|EAY20800.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 275

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 73/208 (35%), Gaps = 18/208 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---D--HCLRETAKD 68
            LV P   IL+ +SGG DS+ L   L  ++ +++F   K  A  +   +  + +      
Sbjct: 23  HLVEPGDRILIGLSGGKDSLTLTHFLSELMREKNFA-FKVVAAHIKFKNLPYGI------ 75

Query: 69  EVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           + +Y+ D C   ++ +      +                   R A + E A+  +   + 
Sbjct: 76  DAQYLQDFCESRQVEYHLVEDNIREVYLENDHKETCIHCSRFRRAKLMELARVFSCNKLT 135

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD + T+ M          M +           N+ + RP       DI+ F ++
Sbjct: 136 LGHHLDDIVATLIMNMTHHGRFSSMAVKLDITAGEEKYNMTMIRPLAYTPELDIKQFCVE 195

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDI 211
                 +      D   R + R  V DI
Sbjct: 196 NEFQPAKCRCPWGDTGIRSQTRAAVDDI 223


>gi|319901513|ref|YP_004161241.1| PP-loop domain protein [Bacteroides helcogenes P 36-108]
 gi|319416544|gb|ADV43655.1| PP-loop domain protein [Bacteroides helcogenes P 36-108]
          Length = 253

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     K    A  V   +  +   +   V Y+ +
Sbjct: 31  GDKILIGLSGGKDSLALVELLAR-RARIYKPKFSVVAAHVVMKN--IPYQSD--VHYLRE 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +   +   +    +  +          R   +   AK      I   H  DD L
Sbjct: 86  YAESWEVPFILYETEFDPVTDIRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   S      +   ++ I RP       D+      R 
Sbjct: 146 ETLLMNIT----YQGAFSSMPPRLAMKKFDMTIIRPMCLVHEVDLLELAQMRK 194


>gi|313239749|emb|CBY14633.1| unnamed protein product [Oikopleura dioica]
          Length = 771

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 87/253 (34%), Gaps = 29/253 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG---KIKFSAISVDHCLR 63
           +++  F   +     ++V +SGG DSM LL AL                  A++VD    
Sbjct: 511 DAIEEF-EMIKNGDRVIVGLSGGKDSMTLLHALLQYRHIAKHTLKMDFTIGALTVD---- 565

Query: 64  ET-AKDEVRYVSDVCSRLRIAH------SVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
              A  +   + +    L + +         + +       + +     +  ++    + 
Sbjct: 566 PQVASYDPSSLIEYMQELGVEYLYKEEPIFANAQKLPDLRSICSYCSRMKRGIMYSAMRE 625

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            N  ++      DD  E+  M +  +        +   +  +   +L + RP    R  +
Sbjct: 626 SNWNVLALGQHLDDCAESFLMSAFHNSQL----FTMKANYTVKAGDLRVIRPLAFVRETE 681

Query: 177 IRSFLLQRNISWCEDPSNTDDRF----ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            R+F     +     P N    F    ER R+++ +   ++   +L    F  L+  +  
Sbjct: 682 TRAFAESNKLPVI--PENCPACFSEPKERNRMKQLLAQQEILHPHL----FHSLKKTLRP 735

Query: 233 AVAMLIPKYLTVH 245
            + M I ++ +  
Sbjct: 736 LLGMAIGEHFSKD 748


>gi|302344097|ref|YP_003808626.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075]
 gi|301640710|gb|ADK86032.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075]
          Length = 256

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 57/181 (31%), Gaps = 15/181 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     + + +SGG DS+GLL  L      R   + + + + +D         +V  +
Sbjct: 20  RMIAEGDKVALGLSGGKDSLGLLWLLRE-RMRRIPIEFELTPMHIDMGF---GNVDVAAL 75

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAKTINATLIMTAH 126
              C+ L +   V                          R A + +  +      +  AH
Sbjct: 76  RRFCAELGLDLLVFESDFGPRAHSPENRKNSPCFFCALKRRAQMFKMCREHGCNKLALAH 135

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ET  M         G   + +    L+   L I RP      +  R F   + +
Sbjct: 136 HQDDIFETFLMNIL----HAGNISTMLPVQALFRGELKIIRPLSLIGADQTRRFAQVKEL 191

Query: 187 S 187
            
Sbjct: 192 P 192


>gi|73947845|ref|XP_854565.1| PREDICTED: hypothetical protein XP_849472 [Canis familiaris]
          Length = 238

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 20/192 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L  +        +    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---VSLRLVAVDEGIGGYRDAALAAV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +   +  +VV++ +      + A AR                  R   + E A+ +
Sbjct: 103 RRQAALWDLPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLV 162

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT I+T H  DD  ETV M   R  A +     G+         L   RP     ++++
Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSRGEGGA-LPRCRPLQLASQKEV 221

Query: 178 RSFLLQRNISWC 189
             +   R + + 
Sbjct: 222 VLYAHFRRLDYF 233


>gi|171185906|ref|YP_001794825.1| PP-loop domain-containing protein [Thermoproteus neutrophilus
           V24Sta]
 gi|170935118|gb|ACB40379.1| PP-loop domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 329

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 28/207 (13%)

Query: 3   LSPIESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
              ++++R     L+ P   + VAVSGG DS+ LL  L   L       +K  A +++  
Sbjct: 34  RKVLDTIRR--HRLIEPGDYVAVAVSGGKDSLVLLYMLGRFLQRGLLKDVKMEAFTINEG 91

Query: 62  LRETA------KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------------ 103
               +      K +  YV ++  +L I ++V S+K+    T +  A              
Sbjct: 92  -HPYSCFYRMAKRD--YVRELAGKLGIEYNVYSFKDIFGVTAMELAENLSKRGHEVHMCT 148

Query: 104 ---EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                R  +++        T I TAH  DD+ +TV M        +     G  +     
Sbjct: 149 IDGVLRRRVMNIIGSRRGWTKIATAHNLDDEAQTVLMNVLMGNLSRFR-WYGRHEDAEEK 207

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
             +   +P    R E++  +     I 
Sbjct: 208 DLIPRIKPLKYVREEEVAIYAYYHGIP 234


>gi|309775465|ref|ZP_07670467.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916761|gb|EFP62499.1| ExsB family protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 317

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 95/265 (35%), Gaps = 26/265 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
              I V VSGG DSM LL ALH     +DR+F   +   I +              V   
Sbjct: 23  GDRIAVGVSGGKDSMVLLTALHMYSKFADRNF---EVVGIHIKLGF-PNMDF--SKVEAF 76

Query: 77  CSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           C    I           ++     K      +   + + A + + AK ++ T +   H  
Sbjct: 77  CKEQGITFHQFDSKVYEILKRNPDKEGRIKCSLCSKFKKATVIDAAKKLSCTKVAFGHHS 136

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET+ M +       G   + +    +   +    RP +     +I S L + NI +
Sbjct: 137 DDAVETLLMNAIHG----GKLATFLPKMYMSRTDTTFIRPLVYSYESEILSALTRNNIPF 192

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
            +  +  +D +     R+ ++D+ L   Y K    Q   + +      +   +     ++
Sbjct: 193 VK-STCPNDGYTE---RQAMKDM-LQDFYNKYPMAQKNFIHMLYNEDQVELWHREGDHKA 247

Query: 249 IIAISQDILNIDSTLLFYLLRVSAA 273
             A S  +L +       L R  AA
Sbjct: 248 EKAKSMSVL-LKEEGSLQLARHGAA 271


>gi|189189368|ref|XP_001931023.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972629|gb|EDU40128.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 570

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 34/190 (17%)

Query: 87  VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146
           ++W++          AR  RY  +    + +  T +M  H  DDQ ETV MR        
Sbjct: 11  LTWRDEFDSKRFETEARTLRYQALGRACRDMKITSLMVGHHADDQAETVMMRLSNYRLRS 70

Query: 147 GMGLSGMCDTIL---------------------------YDLNLWISRPFLRCRREDIRS 179
           G+      + I                                + + RP L   +  + +
Sbjct: 71  GLQAMQRVEWIPECEGIYGVYHSGRGQKPDPDLDIPFLVEQGGIQVLRPLLGFEKARLIA 130

Query: 180 FLLQRNISWCEDPSNTDDRFE-RVRVRRFVRD------IDLHALYLKMKKFQDLRVKVNN 232
              ++ + W ED +N       R  +R   ++      + + +L       Q+      +
Sbjct: 131 TCEEKKVGWAEDQTNQIQSLTSRNAIRHLYKNYRLPQALSVPSLVDLSIHMQERINWHKD 190

Query: 233 AVAMLIPKYL 242
           +   L+ + L
Sbjct: 191 SAHELLDQCL 200


>gi|294659301|ref|XP_002770568.1| DEHA2G02728p [Debaryomyces hansenii CBS767]
 gi|226711415|sp|B5RV24|CTU1_DEBHA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|199433857|emb|CAR65903.1| DEHA2G02728p [Debaryomyces hansenii]
          Length = 377

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 77/212 (36%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +  SGG DS  L   L ++ ++R   +++   +S+D  ++    D +  V
Sbjct: 57  NLFQPGDKVAIGASGGKDSTVLASVLKTL-NERYDYRLELVLLSIDEGIKGYRDDSLATV 115

Query: 74  SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122
               ++  +A  ++S+K+                         R   +   A  +    +
Sbjct: 116 KRNQAQYNMALEIISYKDLYNWSMDEIVSCAGIRSSCTYCGVLRRQALDRGAAKLGINHV 175

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ETV M   R    +   L   C  +       I R  PF    +++I  +
Sbjct: 176 VTGHNADDMAETVLMNLLRGDTAR---LEKSCTILTQSTGSPIKRSKPFKYSYQKEIVLY 232

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +     +      R   R  ++ ++
Sbjct: 233 AHYKKLDYFSTECSYAPEAFRGTARELLKSLE 264


>gi|289622679|emb|CBI50948.1| unnamed protein product [Sordaria macrospora]
          Length = 403

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 74/212 (34%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L YP   + +  SGG DS  L   L ++ ++R    +    +S+D  ++    D +  V
Sbjct: 46  KLFYPGERVAIGASGGKDSTVLASVLKTL-NERYNYGLDLVLLSIDEGIKGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V               +  + G        R   +   AK ++   +
Sbjct: 105 KRNAVQYDMPLKIVGYDELYGWTMDQVVQTIGKKGNCTYCGVFRRQALDRGAKMLDIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ET+ M   R    +   L+   + +  D +  + R  P      ++I  +
Sbjct: 165 VTGHNADDVAETILMNLLRGDMGR---LARSTNIVTGDASSDVKRSKPLKYAYEKEIVMY 221

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R  ++ ++
Sbjct: 222 AYHKKLDYFSTECIYSPEAFRGTARGLIKQLE 253


>gi|169869354|ref|XP_001841243.1| mitochondrial protein [Coprinopsis cinerea okayama7#130]
 gi|116497643|gb|EAU80538.1| mitochondrial protein [Coprinopsis cinerea okayama7#130]
          Length = 344

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 95/299 (31%), Gaps = 28/299 (9%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   + ++ ++R    ++   +S+D  +     D +  V
Sbjct: 32  KLFKPGDRVAIGASGGKDSTVLAYVMKTL-NERYQYGLELFLLSIDEGITGYRDDSLETV 90

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   ++S+                +          R   +   A  +N   I
Sbjct: 91  KRNQQQYDMPLKILSYDELYGWTMDAIVSQVGRKNNCTFCGVFRRQALDRGAAMLNVDHI 150

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ETV M   R    +     G C +I  +    I R  PF     ++I  +
Sbjct: 151 VTGHNADDIAETVLMNIMRGDIAR----LGRCTSICTEGEDTIRRSKPFKYAYEKEIVMY 206

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-------LRVKVNNA 233
              + + +            R   R F++D++       +              +K    
Sbjct: 207 AYFKKLDYFSTECIYSPDAYRGHARAFLKDLEAARPSAIIDIIHSGEAFEVKEEIKATQK 266

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL--RVSAAICGGQISLPGYRSMERV 290
           V     +   +   ++      +  ++  +    +  R    +   Q   P   ++ ++
Sbjct: 267 VQQTCQRCGYMSSNALCKACTLLEGLERGMANAGITDRGQKQLLQAQAEGPAPETLRKI 325


>gi|304315308|ref|YP_003850455.1| ATPase [Methanothermobacter marburgensis str. Marburg]
 gi|302588767|gb|ADL59142.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg]
          Length = 290

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 80/211 (37%), Gaps = 13/211 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              H+ VA+SGG DS+  L  L  +  +  F   + +AI+VD  +     + V    +  
Sbjct: 35  RGEHVAVALSGGKDSVLTLHVLSDLREELDF---ELTAITVDEGIEGYRGEGVLAARENA 91

Query: 78  SRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
              R+     S+++          +            R  +++  A+ I A+ I T H  
Sbjct: 92  RIRRVELIEKSFRDEFNFELEDVLEGFRSPCIPCGVFRRWILNRTAREIGASKIATGHNM 151

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD++++  M   R    K          I   +   I +P      ED+R +    ++ +
Sbjct: 152 DDEVQSFIMSLARGDVRKFSKFGPKLQRIHPRMVPRI-KPLWSTPEEDVRLWAELNDVKF 210

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
              P     R  R  +R F+  I+  +  +K
Sbjct: 211 HSAPCPYSSRSMRAGIRDFLNRIESDSPGVK 241


>gi|16082141|ref|NP_394578.1| hypothetical protein Ta1119 [Thermoplasma acidophilum DSM 1728]
 gi|10640432|emb|CAC12246.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 314

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 22/233 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I VA+SGG DS   L  LH +LS R    ++ +A +VD  +       +     +   L
Sbjct: 50  RISVAISGGKDSSVTLYLLHKILSKRR--NVELTAFTVDEGISGYRPAGLESAIKLTKML 107

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLIMTAHTFD 129
            + HS++ +++S   T       +A           R  LI+E A+  NA  +      D
Sbjct: 108 GVDHSIIRFQDSFGMTLDSIVGADASRIPCSYCGPLRRKLINEMAERQNADYVALGLNLD 167

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  +++ M   +   ++ + +S   +    D  +    P      +++  + +   I + 
Sbjct: 168 DYSQSILMNVAKGDYDRLLRMSPQKE--AKDGLVRRIAPLRSVLEKEVVLYAVINGIPF- 224

Query: 190 EDPS--NTDDRFERVRVRRFVRDIDLHALYLK---MKKFQDLRVKVNNAVAML 237
            D S      R +R   R  V  +  +    K   +K F+  R  V      L
Sbjct: 225 -DSSWCPYYSRAQRNIFREVVNTLSEYNPSTKFSILKFFERARSDVQRNDKAL 276


>gi|224142149|ref|XP_002324421.1| predicted protein [Populus trichocarpa]
 gi|222865855|gb|EEF02986.1| predicted protein [Populus trichocarpa]
          Length = 461

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 17/180 (9%)

Query: 131 QLETVYMRSQRDYAEKGMGLS-----------GMCDTILYDLNLWISRPFLRCRREDIRS 179
           Q E   +R  R+    G+               +      +  + I RP L   +E +  
Sbjct: 2   QAELFILRLSRNSGVLGLAGMAFTSQMFSKSTHLYREGSKNKGILIVRPLLHFSKEILYK 61

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVA 235
              +    W EDP+N +  + R R+R  + ++        L   +   +  R  V+    
Sbjct: 62  ICQESGQDWVEDPTNQNTVYARNRIRMSLGNLSSYTFQSELQGVISACRRTRAYVDQICN 121

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG--GQISLPGYRSMERVMLF 293
            LI + +T+       I  +ILN        L +  A I     Q + P   S  +++L 
Sbjct: 122 NLINQAVTIIDHGYAIIDLEILNPSKVTDICLSKFVALILQYVSQRNRPIRGSTSKLLLH 181


>gi|45191038|ref|NP_985292.1| AER437Cp [Ashbya gossypii ATCC 10895]
 gi|74693248|sp|Q755T1|CTU1_ASHGO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|44984106|gb|AAS53116.1| AER437Cp [Ashbya gossypii ATCC 10895]
          Length = 373

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 78/210 (37%), Gaps = 13/210 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       + V  SGG DS  L   L  +L++R    ++   +S+D  +     D +  V
Sbjct: 60  KLFQRGERVAVGASGGKDSTVLAYILK-LLNERHDYGLEIVLLSIDEGIVGYRDDSLATV 118

Query: 74  SDVCSRLRIAHSVVSWKN----SKPQTGLMAAARE-------ARYALISEHAKTINATLI 122
                +  +   +VS+K+    +  +    A  R         R   +   A  ++   +
Sbjct: 119 KRNQEQYGLPLKIVSYKDLYDWTMDEIVACAGMRNSCTYCGVFRRQALDRGAAMLDIHHV 178

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    +    + +  T      +  S+PF    +++I  +  
Sbjct: 179 VTGHNADDMAETVLMNILRGDVARLEKSTAIL-TQSSGSPVKRSKPFKYAYQKEIVLYAH 237

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +     +      R   R  +++++
Sbjct: 238 YKKLDYFSTECSYAPEAFRGTARELMKNLE 267


>gi|41055997|ref|NP_956424.1| cytoplasmic tRNA 2-thiolation protein 1 [Danio rerio]
 gi|82177120|sp|Q803X1|CTU1_DANRE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|28277535|gb|AAH44158.1| Zgc:55395 [Danio rerio]
 gi|161611950|gb|AAI55785.1| Zgc:55395 protein [Danio rerio]
 gi|182888740|gb|AAI64148.1| Zgc:55395 protein [Danio rerio]
          Length = 343

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 12/202 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +  SGG DS  L   +  +L++R    +K   +SVD  +     D +  V     +  
Sbjct: 53  VAIGASGGKDSTVLAHVMK-LLNERYDYGLKLLLLSVDEGITGYRDDSLETVKRNQQQYE 111

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   +VS++                          R   +   A  +N   I T H  DD
Sbjct: 112 LPLKIVSYEELYGWTMDAIVKQVGLKNNCTFCGVFRRQALDRGAMMLNVDKICTGHNADD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV M   R    +    + +  +   D  +   +P      ++I  +   + + +  
Sbjct: 172 VAETVLMNVLRGDIARLRRCTAISTSSEGDGAIPRCKPLKYAYEKEIVLYAYFKKLDYFS 231

Query: 191 DPSNTDDRFERVRVRRFVRDID 212
                     R   R F++D++
Sbjct: 232 TECIYSPNAYRGHARAFLKDLE 253


>gi|307175621|gb|EFN65530.1| ATP-binding domain-containing protein 3 [Camponotus floridanus]
          Length = 336

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 18/243 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L ++ ++R    +    +S+D  +     D ++ V
Sbjct: 45  KLFKPGNKVAIGASGGKDSTVLAYVLKTL-NERHKYGLDLFLLSIDEGITGYRDDSLKTV 103

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
           +       I   ++S+K               +          R   +   A  +    I
Sbjct: 104 AQNRDDYGIPLKILSYKELYGWTMDSIVTEIGRKNNCTFCGVFRRQALDRGAAILGVDCI 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFL 181
           +T H  DD  ETV M   R    +   L      I    + +   +P      ++I  + 
Sbjct: 164 VTGHNADDIAETVLMNVLRGDIAR---LQRCTSVITAGADSIMRCKPLKYAYEKEIVMYA 220

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-LRVKVNNAVAMLIPK 240
             +++ +            R   R F++D++       +       +++V +++ M   +
Sbjct: 221 YFKHLVYFSTECVYAPNAYRGHARAFLKDLEKIRPSSIIDIIHSGEQLQVKDSIKMPERR 280

Query: 241 YLT 243
             T
Sbjct: 281 NCT 283


>gi|297462107|ref|XP_002701984.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Bos
           taurus]
 gi|297485927|ref|XP_002695276.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Bos
           taurus]
 gi|296477390|gb|DAA19505.1| cytoplasmic tRNA 2-thiolation protein 1-like [Bos taurus]
          Length = 347

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 20/215 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L  +        I    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---ISLHLVAVDEGIGGYRDAALAAV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +R  +  +VV++ +      + A AR                  R   + E A+ +
Sbjct: 103 RRQAARWELPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLV 162

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT ++T H  DD  ETV M   R  A +     G+         L   RP     ++++
Sbjct: 163 GATHVVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQLASQKEV 221

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +   R + +  +         R   R  ++ ++
Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKMLE 256


>gi|325958250|ref|YP_004289716.1| hypothetical protein Metbo_0492 [Methanobacterium sp. AL-21]
 gi|325329682|gb|ADZ08744.1| protein of unknown function UPF0021 [Methanobacterium sp. AL-21]
          Length = 311

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 74/184 (40%), Gaps = 18/184 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+ +SGG DS+ LL  L ++   ++ G I   A+++D  +    ++ V       
Sbjct: 48  KGDKVLLGLSGGKDSVMLLDILSTL---KNRGIIDLVAVTIDEGIEGYREEGVELAIKNA 104

Query: 78  SRLRIAHSVVSWK-------NSKPQTGLMAAAREA-------RYALISEHAKTINATLIM 123
            +  + H VVS+K       +   Q   +   R A       R  + +  +K + AT I 
Sbjct: 105 EKYGVEHRVVSFKQYFGTTLDKIIQNNSLDVRRNACTYCGVFRRWIFNRVSKEVGATKIA 164

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+ +++ M       +    +     +      + I +P      ++I  +++ 
Sbjct: 165 TGHNLDDETQSIVMSYLEGNIQNLTRIGPKSQSKSDKFTVKI-KPLREIPEKEIGLYVIA 223

Query: 184 RNIS 187
           + + 
Sbjct: 224 KELD 227


>gi|257468397|ref|ZP_05632491.1| PP-loop domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317062670|ref|ZP_07927155.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688346|gb|EFS25181.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
          Length = 253

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 83/253 (32%), Gaps = 42/253 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS-------------DRSFGK 50
           SP+         +     I V VSGG DS+  L AL  +                 +  K
Sbjct: 26  SPVGRAMHKYNMIEAGDRIAVGVSGGKDSLTTLNALVRIKKIANIDFEIIPIHIHPNIDK 85

Query: 51  IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS--WKNSKPQTGLMAAAREARYA 108
             F  I              +Y   +  +L++ H+ +S      K            R  
Sbjct: 86  ASFEVI-------------EKYCEKLGLKLQVEHTNLSDMLFGEKEVKNPCFLCGRIRRG 132

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           ++    K      +   H  DD +ET  M        +G         +  +  + + RP
Sbjct: 133 ILYRMMKEQGVNKLALGHHKDDIIETFLMNVF----YQGNMKMMKPCYLSEEYGVTVIRP 188

Query: 169 FLRCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                 +DI  ++ +  +     + P    +   R+RV+  +++I L          +D+
Sbjct: 189 LAFVEEKDIIRYVNKLELPVVKSDCPYEVSENSRRLRVKNLIKEISLEN--------KDV 240

Query: 227 RVKVNNAVAMLIP 239
           R  + N++  L+ 
Sbjct: 241 RSVIFNSIKELLD 253


>gi|289742235|gb|ADD19865.1| uncharacterized conserved protein [Glossina morsitans morsitans]
          Length = 348

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 16/210 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +A SGG DS  L   L  +L+ R    ++   +S+D  +     D +  V    
Sbjct: 49  SGQKVAIAASGGKDSTVLAHIL-RLLNQRYNYGLELVLLSIDEGITGYRDDSLETVKKNR 107

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              ++   ++S++               +T         R   +   AK +    I T H
Sbjct: 108 DDYQMPLKILSYEELYGWTMDRIVAQIGRTNNCTFCGVFRRQALDRGAKLLKVDSIATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             DD  ETV M   R    +        +G  D    + ++   +P      ++I  +  
Sbjct: 168 NADDIAETVLMNILRGDTARLRRCTDIKTGSNDDSSNENSIPRVKPLKYAYEKEIVMYAH 227

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R F++D++
Sbjct: 228 YKKLIYFSTECVFAPNAYRGHARTFLKDLE 257


>gi|198424860|ref|XP_002119654.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
          Length = 983

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 19/238 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISV 58
           +F   I+++  F + +     +LV +SGG DS+ +L  LH          I  +  A+++
Sbjct: 727 LFKLSIKAINDF-KMIKDKDKVLVCLSGGKDSLSMLHVLHQYQYQAGSNNIHFELGAVTI 785

Query: 59  DHCLRE-TAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISE 112
           D          +   +      L I +      ++    S   + + +     +   I  
Sbjct: 786 D----PMNPSFDPSPLIPYMKSLNIEYFYEKQGIMDQATSVNASSVCSFCSRMKRGRIYA 841

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+     ++  AH  DD  ET  M         G+  +      + + +L + RPF+  
Sbjct: 842 AARREGWNVLAFAHHLDDLAETFLM----SAFHNGLLHTMKAHYTIKEGDLRVIRPFIYV 897

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           R  + R F     +     P N    FE  + R  V+ +      L  + F  LR  +
Sbjct: 898 RETETRKFAETALLPVI--PENCPACFEAPKERHRVKQLLASQEILHPRMFFSLREAL 953


>gi|156848278|ref|XP_001647021.1| hypothetical protein Kpol_1050p20 [Vanderwaltozyma polyspora DSM
           70294]
 gi|226711430|sp|A7TER7|CTU1_VANPO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|156117704|gb|EDO19163.1| hypothetical protein Kpol_1050p20 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 363

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 17/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + V  SGG DS  L   L  +L++R    I+   +S+D  +     D +  V    
Sbjct: 65  RGERVAVGASGGKDSTVLAYVLK-LLNERHDYGIEIVLLSIDEGIVGYRDDSLATVKRNQ 123

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + ++   + S+++           +             R   +   A  +    ++T H
Sbjct: 124 QQYQLPLEIFSYQDLYDWTMDDIVETAGIRNSCTYCGVLRRQALDRGAAKLEIKHVVTGH 183

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +   L      +       I R  PF  C +++I  +   +
Sbjct: 184 NADDMAETVLMNILRGDVAR---LEKSTSIMTSSTGSPIKRSKPFKYCYQKEIVLYAHYK 240

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R  +++ +
Sbjct: 241 KLDYFSTECTYAPEAFRGTARELMKNFE 268


>gi|225712834|gb|ACO12263.1| ATP-binding domain-containing protein 3 [Lepeophtheirus salmonis]
 gi|290561359|gb|ADD38080.1| Cytoplasmic tRNA 2-thiolation protein 1 [Lepeophtheirus salmonis]
          Length = 337

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 15/212 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L ++ +DR    +    +S+D  +     D +  V
Sbjct: 46  KLFTPGERVAIGASGGKDSTVLAHTLKTL-NDRYSYGLDLFLLSIDEGISGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                  ++   ++S+++              +          R   +   A  +    I
Sbjct: 105 KRNRDTYKLPLKILSYEDLYGWTMDRIVQEVGRKNNCTFCGVFRRQALDRGAALLKVNKI 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSF 180
            T H  DD  ET+ M   R    +    +             I   +PF     ++I  +
Sbjct: 165 ATGHNADDIAETIMMNVLRGDVGRLSRCAAPITGSNLGEGETIPRVKPFKYAYEKEIVMY 224

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R F++D++
Sbjct: 225 AYFKKLDYFSTECIYSPEAYRGHARAFIKDLE 256


>gi|145360979|ref|NP_181956.2| ATP binding [Arabidopsis thaliana]
 gi|226711456|sp|O64862|CTU1_ARATH RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|26449617|dbj|BAC41934.1| unknown protein [Arabidopsis thaliana]
 gi|30725380|gb|AAP37712.1| At2g44270 [Arabidopsis thaliana]
 gi|330255305|gb|AEC10399.1| cytoplasmic tRNA 2-thiolation protein 1 [Arabidopsis thaliana]
          Length = 355

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 14/222 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I  V    R       + +  SGG DS  L   L  + + R    +    +S+D  
Sbjct: 42  FEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSIDEG 100

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V     +  +   +VS+K+                         R   +
Sbjct: 101 ITGYRDDSLETVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 160

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              A  +    ++T H  DD  ETV +   R    +         T   D  +   +PF 
Sbjct: 161 DRGAALLKVEKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 218

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
               ++I  +   + + +            R   R F++D++
Sbjct: 219 YTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLE 260


>gi|261187399|ref|XP_002620124.1| PP-loop ATPase superfamily protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239594688|gb|EEQ77269.1| PP-loop ATPase superfamily protein [Ajellomyces dermatitidis
           SLH14081]
          Length = 421

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 14/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L YP   + +  SGG DS  L   L ++ ++R    ++   +S+D  +     + +  V
Sbjct: 46  ALFYPGERVAIGASGGKDSTVLASVLKTL-NERYSYGLELMLLSIDEGIHGYRDNSLETV 104

Query: 74  SDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +V              +   + G        R   +   A  +    +
Sbjct: 105 KRNAVQYSMPLEIVGYGELYGWTMDQVVSEIGKKGNCTYCGVFRRQALDRGAAKLAIKHV 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    +    + +  T     ++  S+P      ++I  +  
Sbjct: 165 VTGHNADDVAETVMMNLLRGDLPRLARATSIV-TESTASDIKRSKPLKYAYEKEIVLYAH 223

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R  ++D++
Sbjct: 224 HKKLDYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|198458643|ref|XP_001361116.2| GA20807 [Drosophila pseudoobscura pseudoobscura]
 gi|226711465|sp|Q28ZC1|CTU1_DROPS RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|198136413|gb|EAL25692.2| GA20807 [Drosophila pseudoobscura pseudoobscura]
          Length = 343

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 75/220 (34%), Gaps = 21/220 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I S + F R       + VA SGG DS  L   +  +L++R    ++   +S+D  +   
Sbjct: 41  ITSSKLFRR----GEKVAVAASGGKDSTVLAHVMK-LLNERHDYGLELVLLSIDEGITGY 95

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHA 114
             D +  V       ++   ++S++               ++         R   +   A
Sbjct: 96  RDDSLETVKQNRDDYKMPLKILSYEELYGWTMDRIVSQIGRSNNCTFCGVFRRQALDRGA 155

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRC 172
           K +    I T H  DD  ETV M   R    +   L    D         I   +P    
Sbjct: 156 KLLCVDSIATGHNADDIAETVLMNVLRGDTAR---LRRCTDIRTGGGEDSIPRVKPLKYS 212

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             ++I  +   + + +            R   R F++D++
Sbjct: 213 YEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|330803939|ref|XP_003289958.1| hypothetical protein DICPUDRAFT_154434 [Dictyostelium purpureum]
 gi|325079956|gb|EGC33533.1| hypothetical protein DICPUDRAFT_154434 [Dictyostelium purpureum]
          Length = 1086

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 19/183 (10%)

Query: 19   PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77
               I+V VSGG DS+ L+  L  +   RS  K    A +VD      + D +   +    
Sbjct: 838  GDKIMVGVSGGKDSLTLINTLIDI-KRRSKVKFTIGACTVD----PQSPDYDPSPLKKYF 892

Query: 78   SRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            + + I +  VS               +  + A     R  ++    +     ++      
Sbjct: 893  ASIGIPYFYVSQSIMETAKCIMKEGNKESICAFCSRMRRGILYNTCRKEGYNVLALGQHL 952

Query: 129  DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            +D  E+  M         G+  +   + +    ++ I RP         R +     +  
Sbjct: 953  NDLSESFLM----SALYNGILSTMKVNYLNEQGDIRIIRPLCNISENQTRHYAKVMGLPV 1008

Query: 189  CED 191
             +D
Sbjct: 1009 IDD 1011


>gi|328724233|ref|XP_001952568.2| PREDICTED: hypothetical protein LOC100161816 [Acyrthosiphon pisum]
          Length = 1181

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 25/236 (10%)

Query: 6    IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK--FSAISVDHCLR 63
            IE++R F + +     I+V +SGG DS+ LL  LH      S   I     A +VD    
Sbjct: 925  IEAIREF-KMIRDGDRIMVCLSGGKDSLSLLHTLHQYQYYASSKGIHFTLGAATVD---- 979

Query: 64   ETAKDEVRY----VSDVCSRLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
              +     Y    +      L +        ++    S     + +     +   +   A
Sbjct: 980  PGS---AAYNPKPLIPYLKALGVHYLYEEQKILEQAASAECRSICSFCSRMKRGRLYSAA 1036

Query: 115  KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            ++    ++      DD  E+  M +  +   +    S      + + +L + RPF+  R 
Sbjct: 1037 RSNGYNVLALGQHLDDLAESFLMSTFHNGRLR----SMKAHYAINERDLRVIRPFVYVRE 1092

Query: 175  EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            + +R F   + +       N    FE  + R   + +      L    F  LR  +
Sbjct: 1093 KMLRQFAETKKLPVI--SENCPACFEAPKERHRTKQLLAQQEILFPHLFASLRSAL 1146


>gi|45358916|ref|NP_988473.1| hypothetical protein MMP1353 [Methanococcus maripaludis S2]
 gi|45047782|emb|CAF30909.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 324

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 96/261 (36%), Gaps = 42/261 (16%)

Query: 2   FLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           F    E +  FV     +     ILV +SGG DS+ LL  L      R    ++  A++V
Sbjct: 55  FEEISERMGRFVSKNNIISPKDKILVGLSGGKDSLALLHLL---EPYRRKYGVQIYAVTV 111

Query: 59  DH---CLRE--TAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMA---- 100
           D     +R    +   V  +++ C  L I H +++            S+   G+      
Sbjct: 112 DLNINGIRPWTESNKNVEKIAEHCKNLNIPHKIIAHDGNVVEMSKILSENTKGIEYSPCF 171

Query: 101 AAREARYALISEHAKTI----NATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCD 155
           +    R  +++ +AK      +   I   HT +D  +T+     +    K +  +    +
Sbjct: 172 SCSMVRRHVLTNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALEPIKNFNE 231

Query: 156 TILYDLNLWI-------SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER---VRVR 205
           T +   +  +        RP L    E I   L++ +I +  D    +  + R     +R
Sbjct: 232 TDVDFKDFKLNLKSCCMIRPMLNVSEEKIVKALVECDIEYYHDK--DECPYSRHNGNGIR 289

Query: 206 RFVRDIDLHALYLKMKKFQDL 226
           +      L ++   +   +++
Sbjct: 290 KK-SHEVLESIEEDVPNIREM 309


>gi|308492041|ref|XP_003108211.1| CRE-TUT-1 protein [Caenorhabditis remanei]
 gi|308249059|gb|EFO93011.1| CRE-TUT-1 protein [Caenorhabditis remanei]
          Length = 390

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 14/208 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     + +  SGG DS  L   + ++     +G +    +S+D  ++    D +  V  
Sbjct: 73  LQRGERVAIGASGGKDSTVLAYVMKTLNDIHDYG-LDLQLLSIDEGIKGYRDDSLLAVEK 131

Query: 76  VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                 +  +++S+ +              +          R   +   A  I AT ++T
Sbjct: 132 NRIEYELPLTILSYNDLYGWTMDDIVAKIGKKNNCTFCGVFRRQALDRGAFKIGATKLVT 191

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ETV M   R    +    + +      + +L  ++P   C   DI  +    
Sbjct: 192 GHNADDMAETVLMNVLRGDIARLERCTNI--VTGEEGDLPRAKPLKYCFERDIVMYARTN 249

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R++VRD++
Sbjct: 250 QLEYFYTECIYAPNAYRGYARKYVRDLE 277


>gi|66505934|ref|XP_397328.2| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Apis
           mellifera]
          Length = 343

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 16/207 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L ++ +   +G I    +S+D  +     D ++ V    
Sbjct: 49  SGDKVAIGASGGKDSTVLAYVLKTLNNKYQYG-IDLFLLSIDEGITGYRDDSLKTVQQNK 107

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   +   ++S+K               +          R   +   A  +    I T H
Sbjct: 108 NDYGLPLKILSYKELYGWTMDEIVAEIGKKNNCTFCGVFRRQALDRGAALLGVDCIATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRN 185
             DD  ETV M   R    +   L      I    + +   +P      ++I  +   + 
Sbjct: 168 NADDIAETVLMNILRGDIAR---LQRCTSVITAGADCIRRCKPLKYAYEKEIVMYAYFKQ 224

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212
           + +            R   R F++D++
Sbjct: 225 LVYFSTECIFAPNAYRGHARTFLKDLE 251


>gi|55378723|ref|YP_136573.1| hypothetical protein rrnAC2005 [Haloarcula marismortui ATCC 43049]
 gi|55231448|gb|AAV46867.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 331

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 66/195 (33%), Gaps = 28/195 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   ++ +SGG DS+ L   LH   ++    +I+  A+S+   +       +    ++  
Sbjct: 53  PETWVIGLSGGKDSVVLTQILHDTFAE--DPRIELVALSIHEGIEGYRDASLEACEELTD 110

Query: 79  RLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            L I H  VS             ++        A     R  L+S++A+ ++A  ++T H
Sbjct: 111 DLGIEHVTVSYAEEFGVQMDDVVEDDPEGMAACAYCGVFRRDLLSKYAEELDADKLLTGH 170

Query: 127 TFDDQLETVYMRSQRD------------YAEKGMGLSGMCDTILYDLNLWISR--PFLRC 172
             DD+ ET  M                             +      +  I R  P    
Sbjct: 171 NLDDEAETALMNFLEGDISQIAKHFEASLGPFDSSADAPTEQTREAQDHHIPRAKPLRDI 230

Query: 173 RREDIRSFLLQRNIS 187
             +++  +    ++ 
Sbjct: 231 PEKEVALYARFEDLP 245


>gi|255690098|ref|ZP_05413773.1| PP-loop family protein [Bacteroides finegoldii DSM 17565]
 gi|260624377|gb|EEX47248.1| PP-loop family protein [Bacteroides finegoldii DSM 17565]
          Length = 248

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +    A+ V   +  +   +  E  Y+  
Sbjct: 31  GDRILIGLSGGKDSLALVELLGK-RARIYKPRFSVIAVHVVMTN--IPYQSDTE--YLKA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +A          ++  +          R   +   AK      I   H  DD L
Sbjct: 86  HCEANGVAFVQYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+       +
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMNKFDMTIIRPMCLVHESDLIELAALHH 194


>gi|159155715|gb|AAI54794.1| Zgc:55395 protein [Danio rerio]
          Length = 343

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 12/202 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +  SGG DS  L   +  +L++R    +K   +SVD  +     D +  V     +  
Sbjct: 53  VAIGASGGKDSTVLAHVIK-LLNERYDYGLKLLLLSVDEGITGYRDDSLETVKRNQQQYE 111

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   +VS++                          R   +   A  +N   I T H  DD
Sbjct: 112 LPLKIVSYEELYGWTMDAIVKQVGLKNNCTFCGVFRRQALDRGAMMLNVDKICTGHNADD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV M   R    +    + +  +   D  +   +P      ++I  +   + + +  
Sbjct: 172 VAETVLMNVLRGDIARLRRCTAISTSSEGDGAIPRCKPLKYAYEKEIVLYAYFKKLDYFS 231

Query: 191 DPSNTDDRFERVRVRRFVRDID 212
                     R   R F++D++
Sbjct: 232 TECIYSPNAYRGHARAFLKDLE 253


>gi|328855979|gb|EGG05102.1| hypothetical protein MELLADRAFT_36991 [Melampsora larici-populina
           98AG31]
          Length = 341

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 27/221 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            R       + +A SGG DS  L   + ++ ++R    +    +S+D  ++    D +  
Sbjct: 61  ARMFRRGERVAIAASGGKDSTVLAHVMTTL-NERYDYGLDLCLLSIDEGIKGYRDDSLET 119

Query: 73  VSDVCSRLRIAHSVVSWKN------------SKPQTGLMAAAREARYALISEHAKTINAT 120
           V    S+  +   V+S+              +  + G        R   +   A  +   
Sbjct: 120 VKRNSSQYSLPLKVLSYDELYQGWTMDKVVENVGRKGNCTFCGVFRRQALDRGANILGVD 179

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEK---------GMGLSGMCDTILYDLNLWISRPFLR 171
            I+T H  DD  ETV M   R    +         G   SGM    +        +PF  
Sbjct: 180 HIVTGHNADDIAETVLMNVLRGDIARLERCTEITTGGVTSGMGGIPVKRS-----KPFKY 234

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              ++I  +   + + +            R   R  V++++
Sbjct: 235 AYEKEIVMYAYFKKLDYFSTECTYSPEAYRGHARALVKELE 275


>gi|195581776|ref|XP_002080706.1| GD10105 [Drosophila simulans]
 gi|194192715|gb|EDX06291.1| GD10105 [Drosophila simulans]
          Length = 329

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 9/197 (4%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + VA SGG DS  L   L  +L++R    ++   +S+D  +     D +  V    
Sbjct: 49  RGEKVAVAASGGKDSTVLAHVLK-LLNERHNYGLELVLLSIDEGITGYRDDSLETVKQNR 107

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              ++   ++S++     T      R      +   AK +    I T H  DD  ETV M
Sbjct: 108 DDYQMPLKILSYEELYGWTMDRILPRS---DALDRGAKLLGVDSIATGHNADDIAETVLM 164

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
              R    +   L              I   +P      ++I  +   + + +       
Sbjct: 165 NVLRGDTAR---LRRCTSIRTGGGEDTIPRVKPLKYSYEKEIVMYAHYKKLVYFSTECVF 221

Query: 196 DDRFERVRVRRFVRDID 212
                R   R F++D++
Sbjct: 222 APNAYRGHARAFLKDLE 238


>gi|134096346|ref|YP_001101421.1| C32 tRNA thiolase [Herminiimonas arsenicoxydans]
 gi|205830596|sp|A4G9W3|TTCA_HERAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|133740249|emb|CAL63300.1| putative ATPase [Herminiimonas arsenicoxydans]
          Length = 318

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 20/222 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L ++  +R+  K    A+++D   +        ++     
Sbjct: 57  GDKIMVCLSGGKDSYALLDILMTL-RERAPIKFDIVAVNLD-QKQPN---FPEHILPAYL 111

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L I   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 112 KQLDIPFHIENQDTYSIVKRLIPEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            +ET ++         G  + GM   +  D    I  RP    +  D   +   +N    
Sbjct: 172 IMETFFLNMF-----FGAKIKGMPPKLQSDDGKHIVIRPLAYVKEADTERYAQIKNFPII 226

Query: 190 -EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             D   + +  +R +++  +R+ +          F  L   V
Sbjct: 227 PCDLCGSQENLQRKQIKNMLREWEKKHPGRVDNIFSSLSTVV 268


>gi|321259441|ref|XP_003194441.1| VEG136 protein [Cryptococcus gattii WM276]
 gi|317460912|gb|ADV22654.1| VEG136 protein [Cryptococcus gattii WM276]
          Length = 369

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 69/206 (33%), Gaps = 14/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L SVL+ R    +    +S+D  +     D +  V    
Sbjct: 51  RGERVAIGASGGKDSTVLAHVL-SVLNKRYDYGLDLYLLSIDEGITGYRDDSLETVKQNQ 109

Query: 78  SRLRIAHSVVS------WKNSK-----PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               +   ++S      W   K      +          R   +   A  +    I+T H
Sbjct: 110 LEYGLPLKILSYSELYGWTMDKIVEQVGKKNNCTFCGVFRRQALDRGAAQLGVDHIVTGH 169

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +         T   +  +  S+PF     ++I  +   + +
Sbjct: 170 NADDIAETVLMNIMRGDIARLA--RCTAVTTQSEDTIKRSKPFKYAYEKEIVMYAYFKKL 227

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
           ++            R   R F++D++
Sbjct: 228 TYFSTECIYSPDAYRGHARVFLKDLE 253


>gi|195154724|ref|XP_002018269.1| GL16852 [Drosophila persimilis]
 gi|226711420|sp|B4GHY8|CTU1_DROPE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|194114065|gb|EDW36108.1| GL16852 [Drosophila persimilis]
          Length = 343

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 75/220 (34%), Gaps = 21/220 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I S + F R       + VA SGG DS  L   +  +L++R    ++   +S+D  +   
Sbjct: 41  ITSSKLFRR----GEKVAVAASGGKDSTVLAHVMK-LLNERHDYGLELVLLSIDEGITGY 95

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHA 114
             D +  V       ++   ++S++               ++         R   +   A
Sbjct: 96  RDDSLETVKQNRDDYKMPLKILSYEELYGWTMDRIVSQIGRSNNCTFCGVFRRQALDRGA 155

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRC 172
           + +    I T H  DD  ETV M   R    +   L    D         I   +P    
Sbjct: 156 RLLCVDSIATGHNADDIAETVLMNVLRGDTAR---LRRCTDIRTGGGEDSIPRVKPLKYS 212

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             ++I  +   + + +            R   R F++D++
Sbjct: 213 YEKEIVMYAHYKKLVYFSTECVFAPNAYRGHARAFLKDLE 252


>gi|322491207|emb|CBZ26472.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 322

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 76/223 (34%), Gaps = 24/223 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             I++ R F      P  + VA   SGG DS  L+  L ++ + R    I+   +SVD  
Sbjct: 42  DTIQAERLFA-----PGDV-VACGASGGKDSTVLIHLLDTL-NKRHDYGIRIELVSVDEG 94

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V    +   +   ++S+ +                         R   +
Sbjct: 95  IAGYRDDSLETVKRNSTCYGLPLHILSYHDIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169
            + A  + A  I T H  DD  ET+ M   R  A +   LS     +     +    +P 
Sbjct: 155 EKGAVLVKADKIATGHNADDMAETILMNLLRADAPR---LSRCTSAVSAGEGILPRVKPL 211

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                ++I  +   + + +            R   R  V+D++
Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKEAFRGTARTLVKDLE 254


>gi|225378331|ref|ZP_03755552.1| hypothetical protein ROSEINA2194_03992 [Roseburia inulinivorans DSM
           16841]
 gi|225209768|gb|EEG92122.1| hypothetical protein ROSEINA2194_03992 [Roseburia inulinivorans DSM
           16841]
          Length = 414

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 26/230 (11%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM +      +     F   +   + +D       +  +   
Sbjct: 167 ELVKPGDRIAVCISGGKDSMLMAKLFQELKIHNKF-DFEVKFLVMDPGYSPANRKVIE-- 223

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +   +L I  ++            +          R   +   A+ +    I   H +D
Sbjct: 224 -ENARKLNIPITIFESDIFDSVYNIEKSPCYLCARMRRGHLYHFAQELGCNKIALGHHYD 282

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNIS 187
           D +ET+ M         G  +  M   +       + + RP    R +DI+++     + 
Sbjct: 283 DVIETILMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREDDIKAWRDYNGLH 337

Query: 188 WCEDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           + +             N ++R +RV ++  ++ +     Y++   F+ + 
Sbjct: 338 FIQCACKFTDTCTTCNNEENRSKRVEIKELIKKLKEVNQYVEGNIFKSVE 387


>gi|257451990|ref|ZP_05617289.1| PP-loop domain protein [Fusobacterium sp. 3_1_5R]
 gi|317058539|ref|ZP_07923024.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313684215|gb|EFS21050.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 248

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 73/236 (30%), Gaps = 23/236 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SPI         +     I V +SGG DS+  L AL  +         +   I +     
Sbjct: 21  SPIGRAMHKYHMIEEGDKIAVGISGGKDSLTTLNALIRIQKIAQVS-FEIIPIHIH---- 75

Query: 64  ETAKDEV-RYVSDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAK 115
                   + + + C +L +   V +       +    P           R  ++    +
Sbjct: 76  PNTDKASYQKMKEYCEKLGLELVVETTNLEEILFNEENPMKNPCFLCGRIRRGILYRMLQ 135

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +   H  DD +ET  M        +G            +  + + RP      +
Sbjct: 136 ERKINKLALGHHKDDIIETFLMNVF----YQGNLHMMKPSYYAEEYGVQVIRPLAFVEEK 191

Query: 176 DIRSFLLQRNISW----CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +I  ++ +  +      C   ++   R  R++++  + ++      ++   F  + 
Sbjct: 192 NIIRYVNRLELPVTKSDCPYETSEQSR--RLKMKNLIHEMTKDNPNVRSTIFSSIE 245


>gi|254479732|ref|ZP_05093019.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034329|gb|EEB75116.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 310

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 76/217 (35%), Gaps = 30/217 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +       + L     ++VA+SGG DS+     L  +         +     VD  
Sbjct: 30  FLRQVSKTIEKYKMLPPKGRVVVAISGGKDSLVTAYVLKRL-------GYEVLGFFVDLG 82

Query: 62  L-----RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---------Y 107
           +        +++    V + C    I   VV  K    +     A R+ R          
Sbjct: 83  ITQNDFSPRSREV---VENFCKEHDIPLEVVDLKEKYGKGIPEVAKRQDRICAICGVTKR 139

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWIS 166
            L++E+A ++NA  + T HT DD  + +     R D      G+  +     +       
Sbjct: 140 HLMNEYALSVNAHALATGHTLDDMAKLLLANLMRWDLHHLAKGIPTLPAEPGFAKK---I 196

Query: 167 RPFLRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201
           +P      ++I +F    NI   E   P   + ++ R
Sbjct: 197 KPLAFQSEDEIIAFAKLHNIKPVEAKCPYGREAKYNR 233


>gi|150401226|ref|YP_001324992.1| PP-loop domain-containing protein [Methanococcus aeolicus Nankai-3]
 gi|150013929|gb|ABR56380.1| PP-loop domain protein [Methanococcus aeolicus Nankai-3]
          Length = 334

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 78/223 (34%), Gaps = 44/223 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAK--DEVRY 72
              HI+V +SGG DS+ LL  L      R    IK  AI+VD  +   R  ++    +  
Sbjct: 74  PKDHIIVGLSGGKDSLALLHLL---EPYRRKYGIKIYAITVDLNIENNRPWSETNKNMDK 130

Query: 73  VSDVCSRLRIAHSVVSWKN---------SKPQTGLMA----AAREARYALISEHAKT--- 116
           V + C  L I H ++ +           S+   G+      +    R  +++  A+    
Sbjct: 131 VINHCKNLNIPHKIIGYDQDVVQMSKILSENTKGIEYSPCFSCSVVRRHVLTNFARELFE 190

Query: 117 ----------INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-- 164
                      N   I   HT +D  +T+     +    + +          +D   +  
Sbjct: 191 KEIQKDEKIDENKIKICFGHTLEDNSDTILANILKGDVIRTLEPLKRFHNSEFDYGKFKV 250

Query: 165 ------ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFER 201
                 + RP L    +DI   L + ++ +  D  N    + R
Sbjct: 251 KLQDCILIRPLLSVSEKDILKALNECDLDYYHDK-NECP-YSR 291


>gi|50550947|ref|XP_502947.1| YALI0D17600p [Yarrowia lipolytica]
 gi|74634447|sp|Q6C8R5|CTU1_YARLI RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|49648815|emb|CAG81139.1| YALI0D17600p [Yarrowia lipolytica]
          Length = 365

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 72/210 (34%), Gaps = 14/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L +P   + +  SGG DS  L   + ++ ++R    + F  +S+D  +     D +  V
Sbjct: 43  NLFFPGERVAIGASGGKDSTVLAHVMKTL-NERYNYGVDFVLLSIDEGIHGYRDDSLETV 101

Query: 74  SDVCSRLRIAHSVVSW-----------KNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   VVS+                           R   +   +  +    I
Sbjct: 102 KRNKVQYDMDLEVVSYSELYGWSMDQIVAQIGNKNNCTYCGVFRRQALDRGSAKLGIAHI 161

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    +    + +  T   D  +  S+P      ++I  +  
Sbjct: 162 VTGHNADDMAETVLMNLLRGDTARLDRCTELV-TGSDDSPVKRSKPLKYAYEKEIVLYAH 220

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R  +++++
Sbjct: 221 YKKLDYFSTECTYSPEAFRGTARTLIKNLE 250


>gi|255720959|ref|XP_002545414.1| VEG136 protein [Candida tropicalis MYA-3404]
 gi|240135903|gb|EER35456.1| VEG136 protein [Candida tropicalis MYA-3404]
          Length = 384

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 76/210 (36%), Gaps = 14/210 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L YP   + +  SGG DS  L   L ++ ++R    ++   +S+D  +     D +  V
Sbjct: 64  KLFYPGEKVAIGASGGKDSTVLASILKTL-NERYNYGLELVLLSIDEGIVGYRDDSLATV 122

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLI 122
                +  +   +VS+K+    +     A              R   +   A+ +    +
Sbjct: 123 KRNQKQYEMPLEIVSYKDLYNWSMDEIVACAGIRSSCTYCGVLRRQALDRGAEKLGIKHV 182

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV M   R    +    + +  T      +  S+PF    +++I  +  
Sbjct: 183 VTGHNADDVAETVLMNILRGDVARLENSTNIM-TTSAGSPIKRSKPFKYTYQKEIVLYAH 241

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R  ++ ++
Sbjct: 242 YKKLDYFSTECTYAPEAFRGTARELLKGLE 271


>gi|76803288|ref|YP_331383.1| hypothetical protein NP5322A [Natronomonas pharaonis DSM 2160]
 gi|76559153|emb|CAI50752.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 325

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 24/221 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   L+ +SGG DS+ L   L    +     +++  A+++   +       +    ++ +
Sbjct: 53  PQTWLIGLSGGKDSVVLTHILDETFAA--DPRVELVALTIHEGIEGYRDASLEACRELTT 110

Query: 79  RLRIAHSVVSWKNSKP------------QTGLMAAAREARYALISEHAKTINATLIMTAH 126
            L I H+VV++ +                    A     R   +S +A    A  ++T H
Sbjct: 111 DLDIEHAVVNYADEYGVEMDNVAEDDPLGMAPCAYCGVFRRDALSAYADEYGADKLLTGH 170

Query: 127 TFDDQLETVYMRSQRDY----AEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
             DD+ +T  M          A+      G  +    D + ++ R  P      +++  +
Sbjct: 171 NLDDEAQTAMMNLLSGDIKQVAKHFDASLGSFEDRAVDGDPFVPRAKPLRDIPEKEVALY 230

Query: 181 LLQRNIS--WCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
              + +     E P    + + R  ++  + +++      +
Sbjct: 231 AHLKELPSHMAECPH-ASEAY-RGEIQDHLHELEDEHPGTR 269


>gi|225026806|ref|ZP_03715998.1| hypothetical protein EUBHAL_01058 [Eubacterium hallii DSM 3353]
 gi|224955813|gb|EEG37022.1| hypothetical protein EUBHAL_01058 [Eubacterium hallii DSM 3353]
          Length = 390

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 78/222 (35%), Gaps = 25/222 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DSM +      +     F   +   + +D       +  +    +   +L+
Sbjct: 153 IAVCISGGKDSMLMAKLFQELKLHNKFP-FEVKFVVMDPGYSPENRKVIE---ENARKLK 208

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I   +            +          R   +   AK +    I   H +DD +ET+ M
Sbjct: 209 IPIHIFESDIFESVYHIEKSPCYLCARMRRGYLYNFAKELGCNKIALGHHYDDVIETILM 268

Query: 138 RSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS-- 193
                    G  +  M   +       + + RP    R +DI+++    ++ + +     
Sbjct: 269 GML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLIREDDIKAWRDYNDLRFIQCACKF 323

Query: 194 --------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
                   N +++ +RV +++ + +I     Y++   F+ + 
Sbjct: 324 TDTCTTCNNEENQSKRVEIKQLIAEIKKKNPYVEAHIFKSVE 365


>gi|224542853|ref|ZP_03683392.1| hypothetical protein CATMIT_02045 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524228|gb|EEF93333.1| hypothetical protein CATMIT_02045 [Catenibacterium mitsuokai DSM
           15897]
          Length = 289

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 65/199 (32%), Gaps = 23/199 (11%)

Query: 2   FLSPIESVRFFVR-----SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           F  P+   R F++      L+ P   I V +SGG DSM L   L  +     F       
Sbjct: 25  FRKPL--WRRFIKGIQDYELIEPGDKIAVCISGGKDSMLLAKLLQELQRHGKF-HFDLEF 81

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALIS 111
           I +D       +   + + +   +L I                +          R   + 
Sbjct: 82  ICMDPGYNPANR---KLIEENAEKLGIPIQFYESDIFNVVHGIEKNPCYLCARMRRGFLY 138

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPF 169
             A+ +    I   H + D +ET+ M         G  +  M   +       + + RP 
Sbjct: 139 NRAQELGCNKIALGHHYSDVIETILMGMM-----YGAQIQTMMPKLHSKNFKGMELIRPM 193

Query: 170 LRCRREDIRSFLLQRNISW 188
                EDI ++  + N+ +
Sbjct: 194 YLIHEEDIIAWAEKFNLKF 212


>gi|154346638|ref|XP_001569256.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066598|emb|CAM44396.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 322

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 24/223 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             I+S R FV     P  + VA   SGG DS  L+  L ++     +G I    +SVD  
Sbjct: 42  DTIQSERLFV-----PGDV-VACGASGGKDSTVLIHLLDTLNKQHRYG-IHIELVSVDEG 94

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V    +   +   ++S++N                         R   +
Sbjct: 95  IVGYRDDSLETVKRNSACYGLPLHILSYRNIFGWTMDDIVRVVGLRNNCTFCGVFRRQAL 154

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPF 169
            + A  + A  I T H  DD  ET+ M   R  A +   LS     +     +    +P 
Sbjct: 155 EKGAALVKADKIATGHNADDMAETILMNVLRADAPR---LSRCTSAVAAGEGILPRVKPL 211

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                ++I  +   + + +            R   R  ++D++
Sbjct: 212 KYAYEKEIVLYAHFKKLDYFTTECTYAKEAFRGAARTLMKDLE 254


>gi|150398931|ref|YP_001322698.1| PP-loop domain-containing protein [Methanococcus vannielii SB]
 gi|150011634|gb|ABR54086.1| PP-loop domain protein [Methanococcus vannielii SB]
          Length = 323

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 41/260 (15%)

Query: 2   FLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           F    E +  FV     +     ++V +SGG DS+ LL  L      +    ++  AI+V
Sbjct: 55  FEEISERMGRFVSKNNIISPKDKVVVGLSGGKDSLALLHLL---EPYKRKYGVEIHAITV 111

Query: 59  DH---CLRE--TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-------------GLMA 100
           D     +R        V+ +S  C  L I H ++ +  +  +                  
Sbjct: 112 DLNIDGIRPWNETNKNVKMISKTCENLNIPHKIIPYDENVVEMSKILSKNSKGIDYSPCF 171

Query: 101 AAREARYALISEHAKT---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
           +   +R  +++ +AK         I   HT +D  +T+     +    K +      D  
Sbjct: 172 SCSISRRHILTNYAKETFNCENVKIALGHTLEDNSDTIIANILKGNIIKALEPIKNFDET 231

Query: 158 LYD--------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR---VRR 206
             D         N  + RP L    E I+  L + NI + +D    +  + RV    +R+
Sbjct: 232 KIDFDGLKVSLKNCCMIRPLLNISEEKIKKALNECNIEYYKDK--DECPYSRVNGDGIRK 289

Query: 207 FVRDIDLHALYLKMKKFQDL 226
                 L  L   +   +++
Sbjct: 290 K-SHEVLKNLEKDVPNIREM 308


>gi|167837110|ref|ZP_02463993.1| tRNA(Ile)-lysidine synthetase [Burkholderia thailandensis MSMB43]
          Length = 122

 Score =   99 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++++   + +L   A I +A SGG DS  LL       + R  G  +  A+ V H L   
Sbjct: 14  LDAIGVALSTLPDDAPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSAN 68

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTIN 118
           A   + + ++    L +               G+ A+AREARY  +        
Sbjct: 69  ADAWLAHCAETAEALGVRFDAARVDVPCASGQGVEASAREARYRALETMCARHG 122


>gi|257466209|ref|ZP_05630520.1| PP-loop domain protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917367|ref|ZP_07913607.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691242|gb|EFS28077.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 248

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 74/238 (31%), Gaps = 27/238 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SPI         +     I V +SGG DS+  L AL  +         +   I +     
Sbjct: 21  SPIGRAMHKYHMIEEGDKIAVGISGGKDSLTTLNALIRIQKIAQVS-FEIIPIHIH---- 75

Query: 64  ETAKDEV-RYVSDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAK 115
                   + + + C +L +   V +       +    P           R  ++    +
Sbjct: 76  PNTDKASYQKMKEYCEKLGLELVVETTNLEEILFNEENPMKNPCFLCGRIRRGILYRMLQ 135

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +   H  DD +ET  M        +G            +  + + RP      +
Sbjct: 136 ERKINKLALGHHKDDIIETFLMNVF----YQGNLHMMKPSYYAEEYGVQVIRPLAFVEEK 191

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE------RVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +I  ++ +  +      + +D  +E      R++++  + ++      ++   F  + 
Sbjct: 192 NIIRYVNRLELPV----TKSDCPYEVSEQSRRLKMKNLIHEMTKDNPNVRSTIFSSIE 245


>gi|254583133|ref|XP_002499298.1| ZYRO0E08558p [Zygosaccharomyces rouxii]
 gi|238942872|emb|CAR31043.1| ZYRO0E08558p [Zygosaccharomyces rouxii]
          Length = 370

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 17/209 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L  +L+DR    I+   +S+D  +     D +  V    
Sbjct: 65  RGEKVAIGASGGKDSTVLAYVLK-LLNDRYDYGIELVLLSIDEGIVGYRDDSLATVKRNQ 123

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAH 126
            +  +   ++S++     T     A              R   +   +  +  + ++T H
Sbjct: 124 VQYGLPLEIISYRELYDWTMDEIVACAGVRSSCTYCGVFRRQALDRGSSKLGISHVVTGH 183

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +   L      I       I R  PF    +++I  +   +
Sbjct: 184 NADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAHYK 240

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDL 213
            + +     +      R   R  ++++++
Sbjct: 241 KLDYFSTECSYAPEAFRGTARELMKNLEM 269


>gi|47205345|emb|CAF93474.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 320

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 12/202 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  L   +  +L++R    +    +SVD  +     D +  V     +  
Sbjct: 53  VGIAASGGKDSTVLAHVMK-LLNERYNYGLTLMLLSVDEGITGYRDDSLETVKRNQQQYE 111

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   +VS++                          R   +   A  +    I T H  DD
Sbjct: 112 LPLKIVSYEELYGWTMDAIVRQVGLKNNCTFCGVFRRQALDRGAIMLKVDKICTGHNADD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV M   R    +    + +      D  +   +P      ++I  +   + + +  
Sbjct: 172 VAETVLMNVLRGDIARLRRCTAISTASEGDGVVPRCKPLKYAYEKEIVLYAYFKKLDYFS 231

Query: 191 DPSNTDDRFERVRVRRFVRDID 212
                     R   R F++D++
Sbjct: 232 TECIYSPNAYRGYARTFLKDLE 253


>gi|148234178|ref|NP_001090363.1| cytoplasmic tRNA 2-thiolation protein 1 [Xenopus laevis]
 gi|123913902|sp|Q05AW7|CTU1_XENLA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|116063404|gb|AAI23241.1| MGC154488 protein [Xenopus laevis]
          Length = 341

 Score = 99.6 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 71/210 (33%), Gaps = 15/210 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L +P   + +  SGG DS  L   +  VL++R    +    +SVD  +     D ++ V
Sbjct: 45  KLFHPGEKVGIGASGGKDSTVLAHVMK-VLNERYAYGLDLILLSVDEGISGYRDDSLQTV 103

Query: 74  SDVCSRLRIAHSVVSW--------KNSKPQTGL---MAAAREARYALISEHAKTINATLI 122
                +  +   +VS+             Q GL          R   +   A  +    I
Sbjct: 104 KRNQQQYELPLKIVSYLELYGWTMDQIVKQVGLKNNCTFCGVFRRQALDRGAMMLGINKI 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD  ETV M   R    +         T   +  +   +P      ++I  +  
Sbjct: 164 CTGHNADDIAETVLMNFLRGDIARLR--RCTAITTGSEGAIPRCKPLKYTYEKEIVLYAY 221

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R F++D++
Sbjct: 222 FKKLDYFSTECIYSPNAYRGHARVFLKDLE 251


>gi|254173021|ref|ZP_04879695.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
 gi|214033177|gb|EEB74005.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4]
          Length = 306

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 56/184 (30%), Gaps = 17/184 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +LV VSGG DS      L  +             + ++  + E ++    Y 
Sbjct: 44  KMLKPDERVLVVVSGGKDSAVTAYILKKL-------GYNIECLHINLGIGEYSEKSESYA 96

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124
              C  L +   +V  K    +       R           RY + ++ A       + T
Sbjct: 97  KKQCEALGVPLHIVRVKELLGKGIGEVRTRRPTCSYCGLTKRY-IFNKFAYDNGFDAVAT 155

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD+   ++        +       +  +      +   +P       ++ ++ L  
Sbjct: 156 GHNLDDEASFIFSNMMHWNTQYLAKQGPVTPSQFNGKLVKKVKPLYEVTEREVVAYALAN 215

Query: 185 NISW 188
            I +
Sbjct: 216 GIDY 219


>gi|320580621|gb|EFW94843.1| ATPase, putative [Pichia angusta DL-1]
          Length = 363

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 17/195 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE  + F         + +  SGG DS  L   L ++ ++R    +    +S+D  +   
Sbjct: 45  IEKEKLF----YPGEKVAIGASGGKDSTVLASILKTL-NERYNYGVHLVLLSIDEGIVGY 99

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHA 114
             D +  V     +  +   +VS+K+                         R   +   A
Sbjct: 100 RDDSLATVKRNQQQYEMPLEIVSYKDLYNWTMDEIVSCSGVKSSCTYCGVLRRQALDRGA 159

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             +    ++T H  DD  ETV M   R    +    + +  T      +  S+PF  C +
Sbjct: 160 MKLGINHVVTGHNADDMAETVLMNLLRGDTARLESSTNIT-TKSTGSPIKRSKPFKYCYQ 218

Query: 175 EDIRSFLLQRNISWC 189
           ++I  +   + + + 
Sbjct: 219 KEIVLYAHYKKLDYF 233


>gi|224083793|ref|XP_002307125.1| predicted protein [Populus trichocarpa]
 gi|222856574|gb|EEE94121.1| predicted protein [Populus trichocarpa]
          Length = 354

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 16/211 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   I +  SGG DS  L   L  + + R    +    +SVD  +     D +  V
Sbjct: 53  QLFKPGERIAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEGITGYRDDSLETV 111

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS+K+                         R   +   A  +    +
Sbjct: 112 KRNEIQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKL 171

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI-RSFL 181
           +T H  DD  ETV +   R    +         T   D  +   +PF     ++I  ++ 
Sbjct: 172 VTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFKYTYEKEIMLTYA 229

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             + + +            R   R F++D++
Sbjct: 230 YFKRLDYFSTECIYSPNAYRGFAREFIKDLE 260


>gi|294673442|ref|YP_003574058.1| PP-loop family protein [Prevotella ruminicola 23]
 gi|294471700|gb|ADE81089.1| PP-loop family protein [Prevotella ruminicola 23]
          Length = 259

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 62/187 (33%), Gaps = 31/187 (16%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRYV 73
              ILV +SGG DS+ LL  L    S     +    A+ V      +      + +  Y+
Sbjct: 34  DDRILVGLSGGKDSLLLLEMLAK-RSRIQHPRFTVEALHVRMANIHY------ETDTSYL 86

Query: 74  SDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREA------------RYALISEHAKTIN 118
              C  L +   V++     ++   +    AAR              R   +   A+ + 
Sbjct: 87  QQFCDNLGVKLHVLTTSFEVDATADSEPTDAARRRKQKTPCFLCSWNRRKQMFNLAQELG 146

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I   H  DD L T  M        +G   +      +  + L I RP      +DI+
Sbjct: 147 CNKIALGHHQDDLLHTALMNLT----FQGRFDTMPALLRMRKMPLAIIRPLCMIEEKDIK 202

Query: 179 SFLLQRN 185
            +   + 
Sbjct: 203 QYAELQG 209


>gi|218134226|ref|ZP_03463030.1| hypothetical protein BACPEC_02116 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991601|gb|EEC57607.1| hypothetical protein BACPEC_02116 [Bacteroides pectinophilus ATCC
           43243]
          Length = 376

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 25/226 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I V +SGG DSM +      +     F   +   I +D       +  +    D  
Sbjct: 135 KGDRIAVCISGGKDSMLMAKLFQELKIHNKFP-FEVKFIVMDPGYSPENRKVIE---DNA 190

Query: 78  SRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             L I  ++            +          R   +  +AK +    I   H +DD +E
Sbjct: 191 RNLNIPITIFESDIFESVYHIEKSPCYLCARMRRGHLYSYAKELGCNKIALGHHYDDVIE 250

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           T+ M         G  +  M   +       + + RP    R +DI+++    N+ + + 
Sbjct: 251 TILMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREDDIKAWRDYNNLHFIQC 305

Query: 192 PS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
                       N ++R +RV V+  +R +     +++   F+ + 
Sbjct: 306 ACKFTDTCTTCNNNENRSKRVEVKELIRSLKEVNPFVEGNIFKSVE 351


>gi|160887327|ref|ZP_02068330.1| hypothetical protein BACOVA_05345 [Bacteroides ovatus ATCC 8483]
 gi|156107738|gb|EDO09483.1| hypothetical protein BACOVA_05345 [Bacteroides ovatus ATCC 8483]
          Length = 248

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              IL+ +SGG DS+ L+  L    +     +    A+ V   +  +   +  E  Y+  
Sbjct: 31  GDKILIGLSGGKDSLALVELLGR-RARIYKPRFSVVAVHVVMKN--IPYQSDTE--YLKA 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            C    +            +  +          R   +   AK      I   H  DD L
Sbjct: 86  HCETYGVLFVQYETAFDPATDTRKSPCFLCSWNRRKALFTVAKEHGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET+ M        +G   +     ++   ++ I RP       D+      R+
Sbjct: 146 ETLLMNIT----YQGAFSTMPPRLVMKKFDMTIIRPMCLVHEADLVELAALRH 194


>gi|332703805|ref|ZP_08423893.1| PP-loop domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332553954|gb|EGJ50998.1| PP-loop domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 249

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 19/217 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L   A I VAVSGG DS  ++  L  +        I+     ++        D   +V
Sbjct: 26  QMLSPGARIGVAVSGGVDSFVMIQTLL-IRKSIVPFPIELMVFHINPGF-----DSTNHV 79

Query: 74  --SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
             +D C    +A           ++     +          R   + E  +  N T +  
Sbjct: 80  PVADWCQDNGLAAHFEVTNFGPRAFSEENREKSACFFCSMHRRRRLFELCRNYNVTHLAL 139

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            HT DD + T +M   +     G+          +   L + RP L   ++ IR      
Sbjct: 140 GHTKDDLVTTFFMNMMQGGKVDGL----HSRDEYFGGELMLIRPMLLIEKDMIRRAAKAW 195

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
            +    +P    +   R ++  ++ ++  H+  +K  
Sbjct: 196 RLPIVTNPCPASENSRRSQIGGWLSELWSHSPEIKRN 232


>gi|313227291|emb|CBY22437.1| unnamed protein product [Oikopleura dioica]
          Length = 388

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 17/217 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + I   + F R       + +  SGG DS  L+  +  +L++R    +K   +S+D  + 
Sbjct: 39  NTITKYKLFKR----GQKVAIGASGGKDSAVLMQVMK-ILNERYDYGLKLCLLSIDEGIS 93

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISE 112
                 +  V    +   +   ++S+K+              +          R   +  
Sbjct: 94  GYRDHSLEEVKFHSNNYGLELKILSYKDLYNWSMDEIVSVAGRKSNCTFCGVFRRQALDR 153

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  +   ++ T H  DD  ETV M   R    +    + +  T      +   +P    
Sbjct: 154 GAWQLGVDIVATGHNGDDVAETVLMNMLRGDVGRLSRCTAIT-TADDPSGIPRVKPLKYQ 212

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
              +I  +     + +            R ++R ++R
Sbjct: 213 YEAEIVKYARHSKVRYFSTECTYAPGAHRGQIREYLR 249


>gi|118378423|ref|XP_001022387.1| conserved hypothetical protein [Tetrahymena thermophila]
 gi|89304154|gb|EAS02142.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
          Length = 320

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 15/209 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I V  SGG DS  L+  ++ +     +G ++   +S+D  +     D +  V D  
Sbjct: 49  RGERIAVGASGGKDSTVLIHVMNHLNKKYDYG-LELILLSIDEGITGYRDDSLETVKDNQ 107

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               +   ++S+K+                         R   +   A+ +N   I+T H
Sbjct: 108 VTYGLQLKILSYKDLYGWTMDEIVKQIGLNNNCTFCGVFRRQALDRGAQLLNCDKILTGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKG---MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             DD  ET+ M   R    +    + ++   D +  D ++   +PF     ++I  +   
Sbjct: 168 NADDIAETILMNIARGDFFRLGRCVQITTGGDGVDDDDHIPRLKPFKYTYEKEIVLYAYH 227

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDID 212
           + + +            R  VR  ++DI+
Sbjct: 228 KKLVYFSTECIYSPNAYRGHVRELIKDIE 256


>gi|170106385|ref|XP_001884404.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|226711425|sp|B0DK66|CTU1_LACBS RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|164640750|gb|EDR05014.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 354

 Score = 99.6 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 19/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +  SGG DS  L   +  +L++R    ++   +S+D  +     D +  V
Sbjct: 46  NLFKPGDRVAIGASGGKDSTVLAYVMK-MLNERYQYGLELFLLSIDEGITGYRDDSLETV 104

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   ++S+                +          R   +   A  +N   I
Sbjct: 105 KRNQQQYDMPLKILSYDELYGWTMDAIVSQVGRKNNCTFCGVFRRQALDRGAAMLNVDHI 164

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ETV M   R    +     G C +I       I R  PF     ++I  +
Sbjct: 165 VTGHNADDIAETVLMNIMRGDIAR----LGRCTSICTQGEDTIRRSKPFKYAYEKEIVMY 220

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R F++D++
Sbjct: 221 AYFKKLDYFSTECIYSPDAYRGHARVFLKDLE 252


>gi|328869324|gb|EGG17702.1| ATP-binding domain-containing protein 3 [Dictyostelium
           fasciculatum]
          Length = 396

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 91/269 (33%), Gaps = 19/269 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 + +  SGG DS  L   + ++ + R    +    +S+D  +     D +  V  
Sbjct: 75  FQRGDRVAIGASGGKDSTVLAEIMTTL-NKRHDYGLDLFLLSIDEGITGYRDDSLETVKR 133

Query: 76  VCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              + +I   ++S+K                          R   +   A  + A  I+T
Sbjct: 134 NQQQYQIPLKILSYKELYNWTMDEIVAEIGLKNNCTFCGVFRRQALDRGAVLLGANKIVT 193

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ETV M   R    +      +      +  L  S+PF    +++I  +   +
Sbjct: 194 GHNADDIAETVLMNLLRGDIPRLQ--RCINIVTGSEGALPRSKPFKYTYQKEIVMYAYFK 251

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV-KVNNAVAMLIPKYLT 243
            + +            R   R F++D++     + +   Q        + + M + +   
Sbjct: 252 KLDYFTTECIYAPNAYRGHARDFLKDLEAVRPSIIIDIIQSAENFHFRDEIKMPVQRNCN 311

Query: 244 VHM---RSIIAISQDIL-NIDSTLLFYLL 268
           +      + I ++ D L N++S    Y L
Sbjct: 312 LCGYICSNEICMACDFLKNLNSGKAKYAL 340


>gi|325096389|gb|EGC49699.1| VEG136 protein [Ajellomyces capsulatus H88]
          Length = 420

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 13/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L ++ ++R    ++   +S+D  ++    D +  V    
Sbjct: 50  QGERVAIGASGGKDSTVLASVLKTL-NERHGYGLELMLLSIDEGIKGYRDDSLETVKRNA 108

Query: 78  SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   +V                    G        R   +   A  +    ++T H
Sbjct: 109 MQYCMPLEIVGYGELYGWTMDQVVAEIGTKGNCTYCGVFRRQALDRGAAKLGIGHVVTGH 168

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ET+ M   R    + +  S    T     ++  S+P      ++I  +   + +
Sbjct: 169 NADDVAETIVMNLLRGDLPR-LARSTNIVTESSASDIKRSKPLKYAYEKEIVLYAHYKKL 227

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R  ++D++
Sbjct: 228 CYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|225557681|gb|EEH05967.1| VEG136 protein [Ajellomyces capsulatus G186AR]
          Length = 420

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 13/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L ++ ++R    ++   +S+D  ++    D +  V    
Sbjct: 50  QGERVAIGASGGKDSTVLASVLKTL-NERHGYGLELMLLSIDEGIKGYRDDSLETVKRNA 108

Query: 78  SRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   +V                    G        R   +   A  +    ++T H
Sbjct: 109 MQYCMPLEIVGYGELYGWTMDQVVAEIGTKGNCTYCGVFRRQALDRGAAKLGIGHVVTGH 168

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ET+ M   R    + +  S    T     ++  S+P      ++I  +   + +
Sbjct: 169 NADDVAETIVMNLLRGDLPR-LARSTNIVTESSASDIKRSKPLKYAYEKEIVLYAHYKKL 227

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R  ++D++
Sbjct: 228 CYFSTECIYSPEAFRGSARTLIKDLE 253


>gi|268610221|ref|ZP_06143948.1| hypothetical protein RflaF_12069 [Ruminococcus flavefaciens FD-1]
          Length = 278

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 16/192 (8%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              E+++ +   +     I V +SGG DSM L+     +L            I +D    
Sbjct: 18  KLHEAIKEY-ELIQNGDKICVCISGGKDSM-LMAKCLQMLEKHGTYSFTCKFIVMD---P 72

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
             +++ +  +     +L I   V S +      K +          R   + + A+ +  
Sbjct: 73  GYSEENLIKIKQNAEKLGIPMEVYSTRIFESTEKAEKNPCFLCARLRRGWLYKKAQELGC 132

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDI 177
             I   H FDD +ET+ M         G  +  M   +  +    + + RP    R  DI
Sbjct: 133 NKIALGHHFDDVIETILMGML-----YGSQVQTMMPKLHSENYEGVHLIRPLYLVRESDI 187

Query: 178 RSFLLQRNISWC 189
            ++  +  + + 
Sbjct: 188 INWASENGLEFI 199


>gi|242280055|ref|YP_002992184.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242122949|gb|ACS80645.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 249

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 80/237 (33%), Gaps = 26/237 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +   E V+           I +AVSGG DS  L+  +  +        I+   + V+ 
Sbjct: 20  MLMQKTEMVKD-------GDRIGIAVSGGVDSFVLIRTML-IRQAIIPFNIELMVLHVNP 71

Query: 61  CLRETAKDEVRY--VSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALIS 111
                +     +  +SD C    IA  +          G               R   + 
Sbjct: 72  GFIPDS-----HYPLSDWCRENGIASHIELTDYGPRAHGPENKKKSACFYCSRLRRKRLF 126

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E     N T +   HT DD + T +M   ++   +G+      +   +   L + RP L 
Sbjct: 127 ELCDQYNLTHLALGHTADDLVTTFHMNMLQNGRVQGLS----ANESFFKGKLQVIRPTLM 182

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
             ++ I++   Q  +    +   ++D  +R  +  ++ D        +   F  LR 
Sbjct: 183 LEKKYIKAAARQWELPIWSNKCPSNDNTKRSEINNWLEDEWRKMPGSRNNTFNALRR 239


>gi|240104187|ref|YP_002960496.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
 gi|239911741|gb|ACS34632.1| PP-loop ATPase, YdaO-type [Thermococcus gammatolerans EJ3]
          Length = 304

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 17/184 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +LV VSGG DS      L  +             + ++  + E ++    Y 
Sbjct: 42  KMLKPDEKVLVVVSGGKDSAVTAYILKKL-------GYNIECLHINLGIGEYSEKSEEYA 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124
              C  L +   +V  K    +       R           RY + ++ A       + T
Sbjct: 95  KKQCEALEVPLHIVRVKELFGKGIGEVRTRRPTCSYCGLTKRY-IFNKFAYDNGFDAVAT 153

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD+   ++        +       +         +   +P       ++ ++ L  
Sbjct: 154 GHNLDDEASFIFSNMMHWNTQYLAKQGPVTPAQFNGKLVKKVKPLYEVTEREVVAYALAN 213

Query: 185 NISW 188
            I +
Sbjct: 214 GIEY 217


>gi|168186046|ref|ZP_02620681.1| ExsB family protein [Clostridium botulinum C str. Eklund]
 gi|169296023|gb|EDS78156.1| ExsB family protein [Clostridium botulinum C str. Eklund]
          Length = 245

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 29/221 (13%)

Query: 10  RFFVRSLV----------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           R F+R L               + V +SGG DS+ LL AL  ++   S    +   I++D
Sbjct: 10  RQFLRYLRKSIGEYDMISPGDKVAVGLSGGKDSIFLLFALK-LIQLTSVKNFQLVGINID 68

Query: 60  HCLRETAKDEVRY--VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALIS 111
                    E+    + + C+   I   V            + +    +   + R   + 
Sbjct: 69  LGF------ELNISPLIEFCNNNNIPIIVEKTNIANVVFKDRKEKKPCSLCSKLRKGALI 122

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             ++  N   I   H  DD +ET++M   +   + G     +      D N+ I RP + 
Sbjct: 123 RVSRANNINKIALGHNSDDVIETLFMNVLK-VGKLGTFHPNIH---FDDKNISIIRPLIY 178

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            R + I     +  +   +     D +  R  ++  +  ++
Sbjct: 179 LREDLIEKLTKKYELPVIKSTCPMDKKTTREDMKNLLTSLE 219


>gi|302521005|ref|ZP_07273347.1| hypoxanthine phosphoribosyltransferase [Streptomyces sp. SPB78]
 gi|302429900|gb|EFL01716.1| hypoxanthine phosphoribosyltransferase [Streptomyces sp. SPB78]
          Length = 207

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 81/210 (38%), Gaps = 13/210 (6%)

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I+  HT DDQ ETV +   R    +   LSGM +  +        RPFLR  R+  
Sbjct: 1   GAAAILLGHTRDDQAETVLLGLARGSGTR--SLSGMAE--ISGPGGRYRRPFLRIDRQTA 56

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           R   + +++   +DP NTD  + R R+R         +L   + +      +++   A  
Sbjct: 57  RKACMVQSLPVWDDPHNTDPAYTRSRLRHEGLPALEKSLGKGVVEALARTAQLSRDDADA 116

Query: 238 IPKYL-----TVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC---GGQISLPGYRSMER 289
           +  +      TV           +  + + +   +LR +       GG +       ++R
Sbjct: 117 LDAWAARAAGTVRDEHGALDCAGLYALPAAVRRRVLRAALLDAGAPGGALFAAHIEEVDR 176

Query: 290 VMLFLKSGKRGCVSIGRVVIDRRANFLWIT 319
           ++   + G+R     G+V   R    L I 
Sbjct: 177 LITAWR-GQRALNLPGKVEARRLGGRLVIR 205


>gi|78224527|ref|YP_386274.1| C32 tRNA thiolase [Geobacter metallireducens GS-15]
 gi|123570780|sp|Q39QC5|TTCA_GEOMG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|78195782|gb|ABB33549.1| PP-loop protein [Geobacter metallireducens GS-15]
          Length = 264

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75
              I VAVSGG DS  LL  L   L  R+  K    A ++D      R  +     ++ +
Sbjct: 36  GDRIAVAVSGGKDSYTLLHIL-EALRRRAPVKYDLVAFTIDSGYPGFR--SDVIAAHLKE 92

Query: 76  VCSRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 +    H  +  +  +P +   +     +  ++   A+      +   H  DD +
Sbjct: 93  HGFSHHVEATTHYDIIKEKRRPGSSYCSICARLKRGVLYTLAQQHGCNKLALGHHLDDFV 152

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           ET+ +         G   +     +  +    + RP +     +I  F  + 
Sbjct: 153 ETLLLNQF----FVGTLKAMAPRMLADNGATTVIRPLVYVEEREIIPFAREN 200


>gi|15217127|gb|AAK92521.1|AF401042_1 LaaH [Lactobacillus sakei]
          Length = 348

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 3/145 (2%)

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                A  ++TAH  DDQLET+ M+  R      M   G+     +  +  + RP L   
Sbjct: 1   MTAEKADYLVTAHHGDDQLETLMMKFIRSGELHEM--RGIQSQRPFA-DGTLIRPLLPFA 57

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           ++D+R + L  NI+  ED +N +    R RVR  +           ++       ++   
Sbjct: 58  KQDLRDYALANNITSFEDQTNYETTVLRNRVRHTLVPFLKQENGQILQNANRFSQQLTAL 117

Query: 234 VAMLIPKYLTVHMRSIIAISQDILN 258
           +        T+     + ++  +++
Sbjct: 118 LGQQAQLATTLLPLLDLKVTDKVIS 142


>gi|261856657|ref|YP_003263940.1| PP-loop domain protein [Halothiobacillus neapolitanus c2]
 gi|261837126|gb|ACX96893.1| PP-loop domain protein [Halothiobacillus neapolitanus c2]
          Length = 280

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 21/187 (11%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEV 70
           S++ P   IL+ +SGG DS+ LL  L  V   R+    + +AI+VD            + 
Sbjct: 40  SMIRPGDRILIGLSGGKDSLSLLHCLRHVQR-RAPISFELAAITVDPLVGGF------DP 92

Query: 71  RYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMT 124
             +     +L I + V                   A     +  L+ + A+     ++  
Sbjct: 93  APLVPYLEKLGIPYFVEREDIVGLANTHMRGDSYCAFCARMKRGLLYKAARREGYNVLAL 152

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
               DD  E+  M +        M    + D      ++ I RPF+R R   +  F  Q 
Sbjct: 153 GQHLDDLAESFLMSAFHGGKLNTMKAHYLND----AGDVRIIRPFVRVRERMLADFATQN 208

Query: 185 NISWCED 191
            +    D
Sbjct: 209 QLPVIRD 215


>gi|126644499|ref|XP_001388098.1| hypothetical protein [Cryptosporidium parvum Iowa II]
 gi|126117326|gb|EAZ51426.1| hypothetical protein cgd3_1020 [Cryptosporidium parvum Iowa II]
          Length = 1105

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 85/218 (38%), Gaps = 20/218 (9%)

Query: 7    ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            ++++ F   +     +LVAVSGG DS+ +L  L  +       K + SA +VD    +T+
Sbjct: 838  QAIKKF-DMIREGDKVLVAVSGGKDSLTMLHILLFLQRVAPV-KFEVSAATVD---PQTS 892

Query: 67   KDEVRYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTI 117
            + +   +      L + +  +S          K  + +    A     +  L+    K  
Sbjct: 893  EMDASKLIPYMESLGVKYHFISYPIVDIAAKVKEKQKKISYCAFCSRMKRGLLYSCMKKN 952

Query: 118  NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               ++      DD  E+  +    +        +   +  + + N+ + RP + CR +D+
Sbjct: 953  GYNVLSLGQHVDDICESFLLSLMNNGKLN----TMKANYFVPEYNVRVVRPMIYCREKDL 1008

Query: 178  RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
             +F L+  +    +  N    F + + RR ++ +    
Sbjct: 1009 ANFALKAQLPIITE--NCPACFSQPKERRHMKQLLSQE 1044


>gi|322421218|ref|YP_004200441.1| phosphoadenosine phosphosulfate reductase [Geobacter sp. M18]
 gi|320127605|gb|ADW15165.1| phosphoadenosine phosphosulfate reductase [Geobacter sp. M18]
          Length = 255

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 65/170 (38%), Gaps = 9/170 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC 77
              I VAVSGG DS  +L  L  +L  R+  + +  AI++D   R    D    ++ +  
Sbjct: 29  GDRIAVAVSGGKDSYAMLHML-DILRRRAPVRYELVAINIDSGYRGYRADIIEEHLKEHG 87

Query: 78  SRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
               +    H  +  +  +P +   +     +   +   A+ +    +   H  DD +ET
Sbjct: 88  FAYHMEKTEHYDIISEKRRPNSSYCSICARLKRGTLYTLAQQMGCNKLALGHHMDDFIET 147

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           + +      + K M  S + D  +      + RP +    ++I  F    
Sbjct: 148 LLLNQFFVGSLKAMAPSMLADNGV----TTVIRPLVYVPEKEIIPFSRNN 193


>gi|255635229|gb|ACU17969.1| unknown [Glycine max]
          Length = 353

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 15/210 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L  +    ++G +    +SVD  +     D +  V
Sbjct: 55  QLFSPGERVAIGASGGKDSTVLAYVLSKLNRLHNYG-LHLFLLSVDEGITGYRDDSLETV 113

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   VVS+K+                         R   +   A  +    +
Sbjct: 114 HRNQIQYGLPLKVVSYKDLYGWTMDEIVRVIGLKNNCTFCGVFRRQALDRGASLLKVDKV 173

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +T H  DD  ETV +   R    +         T   D  +   +PF     ++I  +  
Sbjct: 174 VTGHNADDIAETVLLNLLRVDVARLS--RCTSITTGEDGPIPRCKPFKYTYEKEIVMYAY 231

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            + + +            R   R F++D++
Sbjct: 232 FKKLDYFSTECIYSPNAYRGFAREFIKDLE 261


>gi|256810699|ref|YP_003128068.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
 gi|256793899|gb|ACV24568.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
          Length = 303

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 76/223 (34%), Gaps = 27/223 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEVRYVSDVC 77
            I + +SGG DS+ +   L  + +       +     VD  +   RE AK    Y+ D C
Sbjct: 47  KIGIGISGGKDSLAMAYILKKLFNH--IPNAELICFFVDEGIEGFREKAK---EYIKDFC 101

Query: 78  SRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINATL 121
               +   V+ +++    T                   +     R  L++++A       
Sbjct: 102 KEQGLELKVIKFRDEIGHTLDEIVKNNYLTKLNIGKPCSFCGVVRRYLLNKYALKEGCDY 161

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +   H  DD  +T+ M       +    +         +  +   +P      +++R + 
Sbjct: 162 LAIGHNLDDFCQTILMNYVEGNIKN---IIQFGKEFEGEGFVKRIKPLKLIPEDEVRLYA 218

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
              NI + ++P        R R+++ +  ++     +K    +
Sbjct: 219 DIVNIKYQKEPCPYSSLSYRHRMKKVIEVLEEDKPGVKFSILR 261


>gi|302511069|ref|XP_003017486.1| PP-loop family protein [Arthroderma benhamiae CBS 112371]
 gi|291181057|gb|EFE36841.1| PP-loop family protein [Arthroderma benhamiae CBS 112371]
          Length = 680

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 81/263 (30%), Gaps = 59/263 (22%)

Query: 80  LRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L +   V++ +  +     + G    AR  RY ++ +     +   ++  H  DD +ET 
Sbjct: 6   LGVQSKVLTLQWPEGGLLTKKGFETQARMLRYQILGKACVKDDIRALLLGHHQDDNVETA 65

Query: 136 YMRSQRDYAEKGM-------------GLSG------------------MCDTILYD---- 160
            MR  + + + G+             GL G                  M  TI +     
Sbjct: 66  LMRISKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQGILKSTNMDGTISHPSSEI 125

Query: 161 ----------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVR 203
                             +++ RPF    +  + +   +  I++  D +N D  F  R  
Sbjct: 126 PSRSMNFAPGQMQVSTGGIYLFRPFRSFSKSRLVATCQENKIAFVSDSTNEDRTFTIRNT 185

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNID 260
           VR+ +   +L    L+      L  K             ++  +  +         + + 
Sbjct: 186 VRQLLNSENLLPRALQRPSILSLVDKSREQTEKFRELCESILKKVEVLSLDTRFGTMVVK 245

Query: 261 STLLFYLLRVSAAICGGQISLPG 283
             ++  L +        +  LP 
Sbjct: 246 MPMMSELPKHQINAVQARTPLPD 268


>gi|91093715|ref|XP_967465.1| PREDICTED: similar to CG8078 CG8078-PA [Tribolium castaneum]
 gi|270012990|gb|EFA09438.1| hypothetical protein TcasGA2_TC010650 [Tribolium castaneum]
          Length = 338

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 18/190 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +     + + +A SGG DS  L   +  +L+++   K+    +S+D  +     D +  
Sbjct: 43  AKLFKPGSKVAIAASGGKDSTVLAYVMK-LLNEKYDYKLDLVLLSIDEGITGYRDDSLDT 101

Query: 73  VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121
           V        +   ++S+K+              +          R   +   A  +N   
Sbjct: 102 VKQNRDDYGMPLKIMSYKDLYGWTMDEIVAEIGRKNNCTFCGVFRRQALDRGAALLNVDY 161

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRS 179
           + T H  DD  ETV M   R    +       C +I+ D    I   +P      ++I  
Sbjct: 162 LATGHNADDIAETVLMNILRGDLARLS----RCTSIITDSGDGIPRVKPLKYTYEKEIVM 217

Query: 180 FLLQRNISWC 189
           +   R + + 
Sbjct: 218 YAYFRKLVYF 227


>gi|302662076|ref|XP_003022697.1| PP-loop family protein [Trichophyton verrucosum HKI 0517]
 gi|291186657|gb|EFE42079.1| PP-loop family protein [Trichophyton verrucosum HKI 0517]
          Length = 680

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 82/263 (31%), Gaps = 59/263 (22%)

Query: 80  LRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L +   V++ +  +     + G    AR  RY ++ +     +   ++  H  DD +ET 
Sbjct: 6   LGVQSKVLTLQWPEGGLLTKKGFETQARMLRYQILGKACVKDDIRALLLGHHQDDNVETA 65

Query: 136 YMRSQRDYAEKGM-------------GLSG------------------MCDTILYD---- 160
            MR  + + + G+             GL G                  M +TI +     
Sbjct: 66  LMRISKGHRKLGLVGFDEIAPIPECHGLYGVSKSGLATSLQGILKSTNMDETISHPSSEI 125

Query: 161 ----------------LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVR 203
                             +++ RPF    +  + +   +  I++  D +N D  F  R  
Sbjct: 126 PSRSMNFAPGQMQVSTGGIYLFRPFRSFSKSRLVATCQENKIAFVSDSTNEDRTFTIRNT 185

Query: 204 VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII---AISQDILNID 260
           VR+ +   +L    L+      L  K             ++  +  +         + + 
Sbjct: 186 VRQLLNSENLLPRALQRPSILSLVDKSREQTEKFRELCESILKKVEVLSLDTRFGTMVVK 245

Query: 261 STLLFYLLRVSAAICGGQISLPG 283
             ++  L +        +  LP 
Sbjct: 246 MPMMSELPKHQINAVQARTPLPD 268


>gi|262383605|ref|ZP_06076741.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294503|gb|EEY82435.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 248

 Score = 99.2 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 22/196 (11%)

Query: 1   MFLSPIESVRF--FVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F    + V+   F   L+     ILV +SGG DS+ L+  L    S     + +     
Sbjct: 10  LFRKIEDKVKRAIFDYGLINDGDRILVGLSGGKDSLALVDLLGR-RSKIYCPRFEVVVAH 68

Query: 58  V---D--HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYAL 109
           +   +  +C    +  E  Y+        +   V       ++  +          R   
Sbjct: 69  IVMTNIPYC----SDRE--YLRSCAEEHDLPFIVHETSFDPSTDTRKSPCFLCSWTRRKA 122

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + E AK      I   H  DD LET+ M        +G   +      +   ++ I RP 
Sbjct: 123 LFEIAKAHKCNKIALGHHQDDILETLLMNLT----HQGAFGTMPPRLKMDKFDMEIIRPM 178

Query: 170 LRCRREDIRSFLLQRN 185
                 ++      + 
Sbjct: 179 CLVEERELIQVAAWKG 194


>gi|20806605|ref|NP_621776.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|20515049|gb|AAM23380.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
          Length = 301

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 30/217 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +       + L     ++VA+SGG DS+     L  +         +     VD  
Sbjct: 30  FLRQVSKTIEKYKMLPPKGRVVVAISGGKDSLVTAYVLKRL-------GYEVLGFFVDLG 82

Query: 62  L-----RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---------Y 107
           +        +++    V + C    I   +V  K    +     A R+ R          
Sbjct: 83  ITQNDFSPRSREV---VENFCKEHDIPLEIVDLKERYGKDIPEVAKRQDRICAICGVTKR 139

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWIS 166
            L++E+A ++NA  + T HT DD  + +     R D      G+  +     +       
Sbjct: 140 HLMNEYALSVNADALATGHTLDDMAKLLLANLMRWDLHHLAKGVPTLPAEPGFAKK---I 196

Query: 167 RPFLRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201
           +P      ++I +F    NI   E   P   + ++ R
Sbjct: 197 KPLAFQSEDEIIAFAKLHNIKPVEAKCPYGREAKYNR 233


>gi|256078261|ref|XP_002575415.1| cancer-associatedprotein protein [Schistosoma mansoni]
 gi|238660653|emb|CAZ31648.1| cancer-associatedprotein protein, putative [Schistosoma mansoni]
          Length = 315

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 71/206 (34%), Gaps = 14/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I +  SGG DS  L   L ++L+ R     +   +S+D  +     D +  V    
Sbjct: 48  RGDKIAIGASGGKDSTVLAYIL-NLLNKRYDYGAELLLLSIDEGISGYRDDSLMTVQRNQ 106

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   ++S+++                         R   + + A  + A  I T H
Sbjct: 107 IQYSLPLKILSYQDLYGWSMDDIVKHIGNKRNCTYCGIFRRQALDKGALLLGANKICTGH 166

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +    + M      D  L   +PF     ++I  +     +
Sbjct: 167 NADDIAETVLMNILRGDIGRLKRCTAM--MTGTDDILPRFKPFKYAYEKEIVMYAHMHKL 224

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +         +  R  VR F++D++
Sbjct: 225 DYFSTECKYAPQAYRGHVRAFIKDLE 250


>gi|253579524|ref|ZP_04856793.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849025|gb|EES76986.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 394

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 37/211 (17%)

Query: 10  RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHC 61
           R F ++L           I V +SGG DSM +   L  +   +  GKI F  +   ++  
Sbjct: 129 RPFTKALNEYQLIQEGDKIAVCISGGKDSMLMAKLLQEL---KRHGKIHFELVFLVMNPG 185

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
               A +  + + D    L I  +V         ++ +          R   +  HAK +
Sbjct: 186 Y--NADNW-KIIQDNAELLGIPLTVFESDIFDTVAEIENNPCYLCARMRRGYLYSHAKEL 242

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLR 171
               I   H FDD +ET+ M         GM  SG  +T++  L       + + RP   
Sbjct: 243 GCNKIALGHHFDDVIETILM---------GMLYSGKVETMMPKLHSQNFEGMELIRPMYL 293

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            +   I+++     + + +       RF   
Sbjct: 294 IKESAIKAWRDTNGLHFIQCAC----RFTEN 320


>gi|289580657|ref|YP_003479123.1| PP-loop domain protein [Natrialba magadii ATCC 43099]
 gi|289530210|gb|ADD04561.1| PP-loop domain protein [Natrialba magadii ATCC 43099]
          Length = 319

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 76/218 (34%), Gaps = 19/218 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   ++ +SGG DS+ L   LH   +     +I+   +++   +       +    ++  
Sbjct: 53  PQTWVIGLSGGKDSVVLTQILHETFAK--DPRIELVGLTIHEGIEGYRDKSLDACVELSD 110

Query: 79  RLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            L I H VVS             ++        A     R  ++S +A  + A L++T H
Sbjct: 111 DLDIRHEVVSYEDEFGIQMDDVVEDDPENMAACAYCGVFRRDILSRYADDLGADLLLTGH 170

Query: 127 TFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
             DD+ +T  M                 L  + +    +  +  ++P      +++  + 
Sbjct: 171 NLDDEAQTALMNFLEGDVEQIAKHFDASLGPLSEREQQEEFVPRAKPLRDVPEKEVALYA 230

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
              ++              R  +++ + +++ +    +
Sbjct: 231 HLNDLPAHITECPHASEAYRGEIQQLLYELEENHPGTR 268


>gi|167519993|ref|XP_001744336.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777422|gb|EDQ91039.1| predicted protein [Monosiga brevicollis MX1]
          Length = 361

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 16/180 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +  SGG DS  L   L ++ ++R    ++   +SVD  +     D +  V     +  
Sbjct: 54  VAIGASGGKDSTVLAYVLKTL-NERHDYGLQLVLLSVDEGISGYRDDSLETVKRNQQQYA 112

Query: 82  IAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +  ++VS+K            +  +          R   +   A  +    ++T H  DD
Sbjct: 113 LPLTIVSYKELYGWTMDEIVAAVGRKSNCTFCGVFRRQALDRGAHLLKVNKVVTGHNADD 172

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILY-DLNLWISRPFLRCRREDIRSFLLQRNISWC 189
             ETV M   R    +   L    + +   D +L  S+PF     ++I  +   + + + 
Sbjct: 173 VAETVLMNILRGDIAR---LQRCTEIVTGDDGDLPRSKPFKYTYEKEIVMYAYFKKLDYF 229


>gi|301311530|ref|ZP_07217457.1| PP-loop family protein [Bacteroides sp. 20_3]
 gi|300830616|gb|EFK61259.1| PP-loop family protein [Bacteroides sp. 20_3]
          Length = 248

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 64/196 (32%), Gaps = 22/196 (11%)

Query: 1   MFLSPIESVRF--FVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F    + V+   F   L+     ILV +SGG DS+ L+  L    S     + +     
Sbjct: 10  LFRKIEDKVKRAIFDYGLINDGDRILVGLSGGKDSLALVDLLGR-RSKIYCPRFEVVVAH 68

Query: 58  V---D--HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYAL 109
           +   +  +C    +  E  Y+        +   V       ++  +          R   
Sbjct: 69  IVMTNIPYC----SDRE--YLRSCAEEHDLPFIVHETSFDPSTDTRKSPCFLCSWTRRKA 122

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + E AK      I   H  DD LET+ M        +G   +      +   ++ I RP 
Sbjct: 123 LFEIAKAHKCNKIALGHHQDDILETLLMNLT----HQGAFGTMPPRLRMDKFDMEIIRPM 178

Query: 170 LRCRREDIRSFLLQRN 185
                 ++    + + 
Sbjct: 179 CLVEERELIQVAVWKG 194


>gi|156100899|ref|XP_001616143.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805017|gb|EDL46416.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 443

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 12/140 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       I +AVSGG DS  L   L  +    ++ K     +++D  ++    D ++ V
Sbjct: 51  RMFEEKDKICIAVSGGKDSSVLAHVLVQIRRKHNY-KWDLFLLAIDEGIKGYRDDSLKIV 109

Query: 74  SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122
             +  +  +   V+ +++              +          R   +   A   NAT +
Sbjct: 110 FKLQEKYHLPLKVLKFEDIFTYTMDAVVSFIGKKNNCTVCGVFRRQAMERGALLFNATKL 169

Query: 123 MTAHTFDDQLETVYMRSQRD 142
           +T H  DD  ET+ M   R 
Sbjct: 170 VTGHNADDLAETILMNMCRG 189


>gi|331270378|ref|YP_004396870.1| PP-loop family protein [Clostridium botulinum BKT015925]
 gi|329126928|gb|AEB76873.1| PP-loop family protein [Clostridium botulinum BKT015925]
          Length = 233

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 82/217 (37%), Gaps = 22/217 (10%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++ P   + V +SGG DS+ LL  L  ++   S    +   I++D         E+   
Sbjct: 12  NMIEPGDKVAVGLSGGKDSIFLLFGL-RLIQMTSIKNFELIGINIDLGF------EMNLA 64

Query: 74  --SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
              D C +  I   +          N + +    +   + R   +   AK  N   I   
Sbjct: 65  PLEDFCMKNNIPIIIEKTNISEVVFNDRKEKKPCSLCSKLRKGALIRVAKANNVNKIALG 124

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET++M   +   + G     +      D N+ I RP +  +   I+    + +
Sbjct: 125 HNSDDVIETLFMNVLK-VGKLGTFHPNIS---FDDKNINIIRPLIYLKENLIQKLTTKYD 180

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           +   +     D +  R  +++ +  I L  LY   ++
Sbjct: 181 LPVIKSSCPKDKKTTREDMKQLL--IKLENLYPDAQR 215


>gi|317486185|ref|ZP_07945023.1| PP-loop family protein [Bilophila wadsworthia 3_1_6]
 gi|316922562|gb|EFV43810.1| PP-loop family protein [Bilophila wadsworthia 3_1_6]
          Length = 250

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 15/191 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A + VAVSGG DS  LL  L        F +    AI ++      A++    V +  
Sbjct: 29  PGAKVGVAVSGGVDSWVLLEVLRRRQRIVPF-RFDIMAIHLNPGF--DAENHAPLV-EYL 84

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAKTINATLIMTAHTFDD 130
           ++  +A  +    +                     R   + E  +    T +   H  DD
Sbjct: 85  AKHGVAGHIEVTDHGPRGHSPENRRNSACFYCAMLRRTRLFEVCQRYGLTHLAFGHNADD 144

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            + T +M   ++   +GMG+        +   L + RP L   + DI     +  +    
Sbjct: 145 LVTTFFMNLVQNGRVEGMGMC----DDFFKGALKVIRPLLLVEKPDIIKAARRWELPVWS 200

Query: 191 DPSNTDDRFER 201
           +P  +  +  R
Sbjct: 201 NPCPSAGKTNR 211


>gi|212224868|ref|YP_002308104.1| ATPase [Thermococcus onnurineus NA1]
 gi|212009825|gb|ACJ17207.1| ATPase [Thermococcus onnurineus NA1]
          Length = 305

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 61/214 (28%), Gaps = 33/214 (15%)

Query: 1   MFLSPIESVRFFVRS----------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK 50
           M+L P     +F R           L     +LV VSGG DS      L  +        
Sbjct: 21  MYLCPEHFTEYFERKVKRTIERYKLLKPDERVLVVVSGGKDSAVTAYVLKKL-------G 73

Query: 51  IKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE------ 104
                + ++  + E ++    Y    C  L +   +V  K            R       
Sbjct: 74  YDIECLHINLGIGEYSEKSEEYAKRQCEALGVPLHIVRVKELLGHGIGEVRTRRPTCSYC 133

Query: 105 ---ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
               RY + ++ A       + T H  DD+   ++                    +    
Sbjct: 134 GLTKRY-IFNKFAYDNGFDAVATGHNLDDEASFIFSNLM----HWNTQYLAKQGPLTPGE 188

Query: 162 NLWI--SRPFLRCRREDIRSFLLQRNISWCEDPS 193
             ++   +P       ++ ++ L   I +  +  
Sbjct: 189 GKFVKKIKPLYELTEREVVAYALANGIEYHIEEC 222


>gi|257463785|ref|ZP_05628173.1| PP-loop domain protein [Fusobacterium sp. D12]
 gi|317061330|ref|ZP_07925815.1| conserved hypothetical protein [Fusobacterium sp. D12]
 gi|313687006|gb|EFS23841.1| conserved hypothetical protein [Fusobacterium sp. D12]
          Length = 248

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 27/238 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SPI         +     I V +SGG DS+  L AL  V         +   I +     
Sbjct: 21  SPIGRAMHKYNMIEEGDRIAVGISGGKDSLTTLNALIRVQKIARLS-FEILPIHIH---- 75

Query: 64  ETAKDEV-RYVSDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAK 115
                   + + D C  L +   V         + +  P           R  ++    +
Sbjct: 76  PNTDQSSYQKIKDYCEMLGLNLFVEHTNLEEILFHDENPVKNPCFLCGRIRRGILYRILQ 135

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +   H  DD +ET  M        +G            +  + + RP      +
Sbjct: 136 ERQINKLALGHHKDDIIETFLMNVF----YQGNLHMMKPSYYAEEYGVQVIRPLAFVEEK 191

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFE------RVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +I  ++ +  +      + +D  +E      R++++  ++++      ++   F  + 
Sbjct: 192 NIIRYVNRLALPV----TKSDCPYEVSEQSRRLKMKHLIQEMARDNPNVRSTVFSSIE 245


>gi|227498672|ref|ZP_03928816.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904128|gb|EEH90046.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 261

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVC 77
              IL+ +SGG DSM L  AL  +    S         ++D      A+D  +  + D C
Sbjct: 28  GDKILIGLSGGKDSMFLTAALAEIQK-HSPRHFDLLCYTMDGMF---AEDFPKKELEDFC 83

Query: 78  SRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               + H                    +    R A ++  A+ +  + I  AH  DD +E
Sbjct: 84  RTYGLTHYSEQVNVEALWGHRGNTPCFSCAYFRRAAMNRKARELGCSKIALAHHNDDAVE 143

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+ +       + G   + +  T L    + + RP L  R  +I +   +  +    +P 
Sbjct: 144 TLMLNLF----QSGQNKTFLPVTHLSRSGMTVIRPLLFYREAEIIAIGKKIGLHPLANPC 199

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             D + +R  ++   R ++    +        LR      +
Sbjct: 200 PYDGKTQRQDMKELARRLEKEIPHFYDHMASALRHSDKEEL 240


>gi|254167304|ref|ZP_04874156.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469]
 gi|197623567|gb|EDY36130.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469]
          Length = 288

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 21/201 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F   IE V   ++       I +A+SGG DSM LL       ++R +    +    ++ 
Sbjct: 27  LFERRIEKV---LKKYKPEGKIAIALSGGKDSMVLLH----YFAERDYDIFGYF---INL 76

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE--------ARYALISE 112
            + E +    + V + C    +   V + +  +   G+    R+         RY L+++
Sbjct: 77  GIGEHSDKMEKLVRNACKEYGVELIVTNLR-EEYGFGIEGVRRKPCSVCGTVKRY-LMNK 134

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +   A L+ T H  DD L+  +  +     +    +     +    +   I RP    
Sbjct: 135 VPRENGAKLVATGHNMDDFLDFFFKNTLAKNYQWNRNMVPYLPSTHPKMLPKI-RPLYLL 193

Query: 173 RREDIRSFLLQRNISWCEDPS 193
             ++I  +    N+ +  D  
Sbjct: 194 GDKEIEMYAKLNNVPYSSDKC 214


>gi|126464914|ref|YP_001040023.1| PP-loop domain-containing protein [Staphylothermus marinus F1]
 gi|126013737|gb|ABN69115.1| PP-loop domain protein [Staphylothermus marinus F1]
          Length = 330

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 115/295 (38%), Gaps = 39/295 (13%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + VR  +R         HI+VAVSGG DS+ LL  L+++   +     K +A+ +D  + 
Sbjct: 32  KKVRRTIRKYKMFSSREHIVVAVSGGKDSLSLLHYLYNL--SKRVPGWKITALLIDEGIG 89

Query: 64  ETAK----DEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGL----MAAARE 104
                   D +R V    + L + + + S+K               + GL     +    
Sbjct: 90  GYRDITKKDFLRVV----NELGVNYKIASFKEYLGYTLDEIVRIGREKGLPYLPCSYCGV 145

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            R  L+++ A+ +  T++ TAH  DD ++T  M    +  +K + L+ +   + +   + 
Sbjct: 146 FRRYLLNKVARDLGGTVLATAHNLDDVIQTYVMNIINNSWDKILRLAPVTGPLDHPKFVR 205

Query: 165 ISRPFLRCRREDIRSFLLQRNI--SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
            ++PF     ++   + +  N+   + E P      + R  +R  +R   L+ L  K   
Sbjct: 206 RAKPFYEILEKETTLYSILNNLYPKFVECP------YARFNIRWMIR-RQLNELEEKYPG 258

Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS--QDILNIDSTLLFYLLRVSAAIC 275
            +   ++    +  ++ K+    ++  I         +        L R    I 
Sbjct: 259 TKYSLLRSLLRIISILSKHRDEIIQGEIKTCKVCGEPSAHEICRACLYRYELGIM 313


>gi|14590222|ref|NP_142287.1| hypothetical protein PH0300 [Pyrococcus horikoshii OT3]
 gi|3256690|dbj|BAA29373.1| 310aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 310

 Score = 98.8 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 63/199 (31%), Gaps = 27/199 (13%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     ILVAVSGG DS      L  +             + ++  +   ++    Y 
Sbjct: 42  KLLTKDERILVAVSGGKDSAVTAYVLKKL-------GYNIECLHINLGISGYSEKSEEYA 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124
              C  +     +V  K            R           RY ++++ A       I T
Sbjct: 95  KKQCKLIGAPLHIVRIKEILGYGIGEVKTRRPPCSYCGLTKRY-IMNKFAYDNGFDAIAT 153

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLL 182
            H  DD+  +  + +   +  + +   G    IL     +I   +P       ++ ++ L
Sbjct: 154 GHNLDDEA-SFLLNNILHWNTEYLAKGG---PILPQQGKFIKKVKPLYEVTEREVVAYAL 209

Query: 183 QRNISWCEDPSNTDDRFER 201
              + +  +       + R
Sbjct: 210 AVGLEYIVEECP----YAR 224


>gi|114678754|ref|XP_001174153.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pan
           troglodytes]
          Length = 348

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 20/215 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L ++        I    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRALAPRLG---ISLQLVAVDEGIGGYRDAALATV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +R  +  +VV++++      + A AR                  R   + E A+ +
Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT I+T H  DD  ETV M   R  A +     G+         L   R      ++++
Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRQLQFASQKEV 221

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +   R + +  +         R   R  ++ ++
Sbjct: 222 VLYAQFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256


>gi|312377717|gb|EFR24478.1| hypothetical protein AND_10897 [Anopheles darlingi]
          Length = 357

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 70/206 (33%), Gaps = 12/206 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +A SGG DS  L   +  VL++R    +    +S+D  +     D ++ V+   
Sbjct: 35  AGEKVAIAASGGKDSTVLAHVMK-VLNERYNYGLNLVLLSIDEGITGYRDDSLKTVAQNR 93

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               +   ++S++               ++         R   +   A+ +    + T H
Sbjct: 94  DDYGMPLRILSYQELYGWTMDRIVAEIGRSNNCTFCGVFRRQALDRGARLMEVDCVATGH 153

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +      +      +  +   +P      ++I  +   + +
Sbjct: 154 NADDIAETVIMNILRGDTARLRRCCDIKTGSKANDTIPRVKPLKYSYEKEIVMYAHFKKL 213

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R F++D++
Sbjct: 214 VYFSTECVFAPNAYRGHARAFLKDLE 239


>gi|325968454|ref|YP_004244646.1| PP-loop domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707657|gb|ADY01144.1| PP-loop domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 338

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 70/204 (34%), Gaps = 23/204 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAISVDHCL 62
           + I+++R + R +     I +A+SGG DS+ L+  L          K ++  A S++   
Sbjct: 37  TVIKTIRRY-RLINEGDKIGIAISGGKDSLTLMYLLGKFRKQGKLPKNVELMAFSINEG- 94

Query: 63  RETAK----DEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAR 103
              +         YV  +     I + V ++K                      +     
Sbjct: 95  HPYSCFYRMARSDYVQKLSEEYDIPYKVYTFKELFGVTATDVAHGLWSKGINVHMCTIDG 154

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             R   ++     +  T I T H  DD+ +TV +    +  ++     G    I  +  +
Sbjct: 155 VLRRRAMNIIGHKLGLTKIATGHNLDDEAQTVLLNVLSNDLDRFAWF-GPKPEIDREGFI 213

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
              +P    R E+I  +     I 
Sbjct: 214 PRIKPLRFVREEEIAIYAHYHGIP 237


>gi|156937500|ref|YP_001435296.1| PP-loop domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156566484|gb|ABU81889.1| PP-loop domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 383

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++ +  P  +L+ +SGG DS+ LL  L  V ++         A +VD  +      E   
Sbjct: 40  LKKVELPKRVLLGLSGGKDSVALLYLLKKVGTE-------VVAATVD-TVPNYTSLEAEL 91

Query: 73  VSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLIM 123
              V   L + H  V  K           K +    +   + R   +   A+ +    I 
Sbjct: 92  AKRVAEELGVTHYTVYAKELYGFTALSYKKLRRAPCSICSKLRRHALELLARRLGIEYIA 151

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD          R   +    +  +             +P      ++I +FLL 
Sbjct: 152 TGHNMDDMASWALSYILRGDFQSLKKVRPVERPKGPARGR--VKPLFWIGEKEIMTFLLS 209

Query: 184 RNISW 188
           + + W
Sbjct: 210 KKLPW 214


>gi|262275723|ref|ZP_06053532.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP
           101886]
 gi|262219531|gb|EEY70847.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Grimontia hollisae CIP
           101886]
          Length = 308

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 90/256 (35%), Gaps = 24/256 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 38  GDRIMVCLSGGKDSYTMLEILQSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 92

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V        K+  P+     +     R  ++   AK + AT I   H  DD
Sbjct: 93  ESLGVEYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 152

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +         
Sbjct: 153 MLETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIERYAEAAAFPII 207

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  ++  +RD D          F+ ++  V + +A           
Sbjct: 208 --PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRAMQNVVPSHLADFELFDFKSIN 265

Query: 247 RSIIAISQDILNIDST 262
           +    I+      D  
Sbjct: 266 QGSGVINGGDTAFDRE 281


>gi|229585081|ref|YP_002843583.1| PP-loop domain protein [Sulfolobus islandicus M.16.27]
 gi|238619984|ref|YP_002914810.1| PP-loop domain protein [Sulfolobus islandicus M.16.4]
 gi|228020131|gb|ACP55538.1| PP-loop domain protein [Sulfolobus islandicus M.16.27]
 gi|238381054|gb|ACR42142.1| PP-loop domain protein [Sulfolobus islandicus M.16.4]
          Length = 323

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 33/258 (12%)

Query: 6   IESVRFFVR------SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           IE VR  V+       LV    IL+AVSGG DS+ L   L   ++       K  A +++
Sbjct: 28  IEDVRKRVKLEAQKQELVNSNKILLAVSGGKDSLVLADTLSQFIN-----PSKLIAFNIN 82

Query: 60  HCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP---------------QTGLMAAAR 103
             +R     ++V+ + +    L I      +K                            
Sbjct: 83  EGIRGYNRSEDVKKLEEYLKDLGIELIKSGFKEEVGFSLDEMLQASLKRNLNVSACTFCG 142

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             R  LI+E    ++A  + T H  DD+++T+ +   R    + + L G    I+    +
Sbjct: 143 GFRRKLINEAGIKVDADYVATGHNLDDEVQTIIINLIRGDLLRLIRL-GDKPLIVSSKFV 201

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHA---LYL 218
              +P  +    +   +   +   + E       +    R +VR  +  ++      L  
Sbjct: 202 MRVKPLRKIYEWETTIYAHLKGFEFQETECPYISQKPTLRAKVRELLYKLEEKKPGTLLR 261

Query: 219 KMKKFQDLRVKVNNAVAM 236
            +++F ++  K+     +
Sbjct: 262 ILEQFDEISEKLKKEHRL 279


>gi|227827811|ref|YP_002829591.1| PP-loop domain protein [Sulfolobus islandicus M.14.25]
 gi|227830521|ref|YP_002832301.1| PP-loop domain protein [Sulfolobus islandicus L.S.2.15]
 gi|229579334|ref|YP_002837732.1| PP-loop domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581906|ref|YP_002840305.1| PP-loop domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998016|ref|YP_003419783.1| PP-loop domain protein [Sulfolobus islandicus L.D.8.5]
 gi|227456969|gb|ACP35656.1| PP-loop domain protein [Sulfolobus islandicus L.S.2.15]
 gi|227459607|gb|ACP38293.1| PP-loop domain protein [Sulfolobus islandicus M.14.25]
 gi|228010048|gb|ACP45810.1| PP-loop domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012622|gb|ACP48383.1| PP-loop domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|284445911|gb|ADB87413.1| PP-loop domain protein [Sulfolobus islandicus L.D.8.5]
          Length = 323

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 33/258 (12%)

Query: 6   IESVRFFVR------SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           IE VR  V+       LV    IL+AVSGG DS+ L   L   ++       K  A +++
Sbjct: 28  IEDVRKRVKLEAQKQELVNSNKILLAVSGGKDSLVLADTLSQFIN-----PSKLIAFNIN 82

Query: 60  HCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP---------------QTGLMAAAR 103
             +R     ++V+ + +    L I      +K                            
Sbjct: 83  EGIRGYNRSEDVKKLEEYLKDLGIELIKSGFKEEVGFSLDEMLQASLKRNLNVSACTFCG 142

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             R  LI+E    ++A  + T H  DD+++T+ +   R    + + L G    I+    +
Sbjct: 143 GFRRKLINEAGIKVDADYVATGHNLDDEVQTIIINLIRGDLLRLIRL-GDKPLIVSSKFV 201

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHA---LYL 218
              +P  +    +   +   +   + E       +    R +VR  +  ++      L  
Sbjct: 202 MRVKPLRKIYEWETTIYAHLKGFEFQETECPYISQKPTLRAKVRELLYKLEEKKPGTLLR 261

Query: 219 KMKKFQDLRVKVNNAVAM 236
            +++F ++  K+     +
Sbjct: 262 ILEQFDEISEKLKKEHRL 279


>gi|307209204|gb|EFN86311.1| ATP-binding domain-containing protein 3 [Harpegnathos saltator]
          Length = 340

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 17/211 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L ++ ++R   K+    +S+D  +     D ++ V
Sbjct: 45  KLFKPGDKVAIGASGGKDSTVLAYILKTL-NERYKYKLDLFLLSIDEGITGYRDDSLKTV 103

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                   I   ++S+K               +          R   +   A  +    I
Sbjct: 104 MQNRDDYSIPLKILSYKELYGWTMDAIVAEIGRKNNCTFCGVFRRQALDRGAALLGVDCI 163

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFL 181
            T H  DD  ETV M   R    +   L      I    + +   +P      ++I  + 
Sbjct: 164 ATGHNADDIAETVLMNVLRGDIAR---LQRCTSVITAGADSIMRCKPLKYAYEKEIVMYA 220

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +++ +            R   R F++D++
Sbjct: 221 YFKHLVYFSTECIYAPNAYRGYARAFLKDLE 251


>gi|260813136|ref|XP_002601275.1| hypothetical protein BRAFLDRAFT_127518 [Branchiostoma floridae]
 gi|229286568|gb|EEN57287.1| hypothetical protein BRAFLDRAFT_127518 [Branchiostoma floridae]
          Length = 457

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 69/204 (33%), Gaps = 18/204 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  L   +  +L++R    +    +SVD  +     D +  V     +  
Sbjct: 52  VAIAASGGKDSTVLAHLMK-LLNERHDYGLTLFLLSVDEGITGYRDDSLETVKRNQQQYE 110

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   VVS+K                          R   +   A  +    I+T H  DD
Sbjct: 111 LPLKVVSYKELYGWTMDEIVRQIGLKNNCTFCGVFRRQALDRGAMMLGVDKIVTGHNADD 170

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISW 188
             ETV M   R    +       C  I+      I R  PF     ++I  +   + + +
Sbjct: 171 VAETVIMNVLRGDIAR----LQRCTAIVTGTEGAIPRCKPFKYTYEKEIVMYAYFKKLDY 226

Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212
                       R   R +++D++
Sbjct: 227 FSTECIYSPNAYRGHARTYLKDLE 250


>gi|293603062|ref|ZP_06685496.1| PP-loop family protein [Achromobacter piechaudii ATCC 43553]
 gi|292818456|gb|EFF77503.1| PP-loop family protein [Achromobacter piechaudii ATCC 43553]
          Length = 325

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 20/222 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L  +   R+  K +  A+++D   +    D    +     
Sbjct: 50  GDRVMVCLSGGKDSYAMLDILLQLQK-RAPFKFELIAVNLD-QKQPGFPD--HILPQYLK 105

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L +   +       +  +  +    + +     R  ++   A  + AT I   H  DD 
Sbjct: 106 DLGVPFHIETQDTYSIVTRVLEEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDDI 165

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L T ++        KGM        +  D    + RP       D+ ++   +       
Sbjct: 166 LATFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVAETDLIAYAELKQFPII-- 219

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P N     +  +R  V R ++D D          F  L   V
Sbjct: 220 PCNLCGSQENLKRKEVGRMIKDWDKQHPGRSWNVFNALSRVV 261


>gi|309389041|gb|ADO76921.1| PP-loop domain protein [Halanaerobium praevalens DSM 2228]
          Length = 256

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 15/167 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DS  LL+ L  + S          A+ VD    +++      + D C 
Sbjct: 26  GDRIAVGLSGGKDSAFLLLVLK-IFSKYFSKDFMLKAVHVDPGFDDSSS---LALKDFCQ 81

Query: 79  RLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +L+I   ++      + NS   +   +     R   I  + K  N   +   H  DD +E
Sbjct: 82  QLKIDLKIIKSEIALYINSTEASNPCSKCAHFRKGAIINYLKQNNFNKLAFGHHLDDAVE 141

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRS 179
           T  M            L  +      D N + I RP +  R   I  
Sbjct: 142 TYLM-----SIIYSGQLQTLAPKRFLDKNKVEIIRPLIYLRESVIIR 183


>gi|302694583|ref|XP_003036970.1| hypothetical protein SCHCODRAFT_48271 [Schizophyllum commune H4-8]
 gi|300110667|gb|EFJ02068.1| hypothetical protein SCHCODRAFT_48271 [Schizophyllum commune H4-8]
          Length = 354

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 18/213 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            R       + +  SGG DS  L   L ++ ++R    +    +S+D  +     D +  
Sbjct: 45  ARLFQRGDRVAIGASGGKDSTVLAYVLKTL-NERYDYGLDLFLLSIDEGIMGYRDDSLET 103

Query: 73  VSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATL 121
           V     +  +   ++S+                +          R   +   A  ++   
Sbjct: 104 VKRNQQQYDMPLKILSYDELYGWTMDRIVSQVGKKNNCTFCGVFRRQALDRGAAMLHVDH 163

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRS 179
           I+T H  DD  ETV M   R    +     G C +I       I R  PF     ++I  
Sbjct: 164 IVTGHNADDIAETVLMNIMRGDIAR----LGRCTSICTQGEDTIKRSKPFKYAYEKEIVM 219

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   + + +            R   R F++D++
Sbjct: 220 YAYFKKLDYFSTECIYSPDAYRGHARVFLKDLE 252


>gi|262171527|ref|ZP_06039205.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus MB-451]
 gi|261892603|gb|EEY38589.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus MB-451]
          Length = 310

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 89/259 (34%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLKKSAPIS-FELVAVNLD-QKQPG---FPAHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKIKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFALFDFKSIN 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           +    I+   +  D   + 
Sbjct: 268 KDSGVINGGDIGFDKEEIA 286


>gi|150008723|ref|YP_001303466.1| hypothetical protein BDI_2113 [Parabacteroides distasonis ATCC
           8503]
 gi|255014521|ref|ZP_05286647.1| hypothetical protein B2_11474 [Bacteroides sp. 2_1_7]
 gi|256841242|ref|ZP_05546749.1| tRNA(Ile)-lysidine synthetase [Parabacteroides sp. D13]
 gi|149937147|gb|ABR43844.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
 gi|256737085|gb|EEU50412.1| tRNA(Ile)-lysidine synthetase [Parabacteroides sp. D13]
          Length = 248

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 22/196 (11%)

Query: 1   MFLSPIESVRF--FVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F    + ++   F   L+     ILV +SGG DS+ L+  L    S     + +     
Sbjct: 10  LFRKIEDKIKRAIFDYGLINDGDRILVGLSGGKDSLALVDLLGR-RSKIYCPRFEVVVAH 68

Query: 58  V---D--HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYAL 109
           +   +  +C    +  E  Y+        +   V       ++  +          R   
Sbjct: 69  IVMTNIPYC----SDRE--YLRSCAEEHDLPFIVHETSFDPSTDTRKSPCFLCSWTRRKA 122

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + E AK      I   H  DD LET+ M        +G   +      +   ++ I RP 
Sbjct: 123 LFEIAKAHKCNKIALGHHQDDILETLLMNLT----HQGAFGTMPPRLRMDKFDMEIIRPM 178

Query: 170 LRCRREDIRSFLLQRN 185
                 ++      + 
Sbjct: 179 CLVEERELIQVAAWKG 194


>gi|260772837|ref|ZP_05881753.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio metschnikovii
           CIP 69.14]
 gi|260611976|gb|EEX37179.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio metschnikovii
           CIP 69.14]
          Length = 310

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 24/256 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+        I FS I+V+  L +       ++  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKS---APITFSLIAVN--LDQKQPGFPEHILPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + ++                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  QELGVEYKIIEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRAAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            +ET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 IIETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYANHRAYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +++ +   D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNMQRQNIKQMLNAWDKQFPGRIETMFRAMQNVVPSHLADFELFDFKSIN 267

Query: 247 RSIIAISQDILNIDST 262
           R    I+   +  D  
Sbjct: 268 RDSGVINGGDIGFDKE 283


>gi|119720174|ref|YP_920669.1| PP-loop domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119525294|gb|ABL78666.1| PP-loop domain protein [Thermofilum pendens Hrk 5]
          Length = 323

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 69/202 (34%), Gaps = 27/202 (13%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  +E  R   R       +L AVSGG+DS  +L  L        F   + +A+ VD  +
Sbjct: 37  LGALERYRLVERGW----RVLAAVSGGADSAAMLGVLAKASVALGF---RLAAVHVDLGI 89

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALISE 112
              ++   R V ++C  L +  +VVS            A R  R            L++ 
Sbjct: 90  EGFSEASRRAVEELCGSLGVPFAVVSLPEVAGVGLPELARRARRPVCSVCGAVKRYLVNV 149

Query: 113 HAKTINATLIMTAHTFDDQ----LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            A    A ++   H  DD     ++    +   + A+ G        T      +   RP
Sbjct: 150 AAAEAGADVVALGHHADDLLAYAVKNFLFQRLPELAKLG------PKTESTGGLVGRVRP 203

Query: 169 FLRCRREDIRSFLLQRNISWCE 190
                + +   +     + + E
Sbjct: 204 LYEVYKSEASLYARLSGLPFTE 225


>gi|150951581|ref|XP_001387923.2| conserved protein of the N-type ATP pyrophosphatase superfamily
           [Scheffersomyces stipitis CBS 6054]
 gi|284018076|sp|A3GGB3|CTU1_PICST RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|149388712|gb|EAZ63900.2| conserved protein of the N-type ATP pyrophosphatase superfamily
           [Pichia stipitis CBS 6054]
          Length = 376

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L ++     +G I    +S+D  ++    D +  V
Sbjct: 55  KLFSPGDKVAIGASGGKDSTVLASVLKTLNERYDYGLI-LVLLSIDEGIKGYRDDSLATV 113

Query: 74  SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   ++S+++                         R   +   A  +    +
Sbjct: 114 KRNQVQYEMPLEIISYRDLYNWTMDEIVSCAGIRSSCTYCGVLRRQALDRGAAKLGINHV 173

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ETV M   R    +   L   C  I       I R  PF    +++I  +
Sbjct: 174 VTGHNADDMAETVLMNLLRGDTAR---LEKSCAIITQSAGSPIKRSKPFKYTYQKEIVLY 230

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +            R   R  ++ ++
Sbjct: 231 AHYKKLDYFSTECTYAPEAFRGTARELLKSLE 262


>gi|323474879|gb|ADX85485.1| PP-loop domain protein [Sulfolobus islandicus REY15A]
 gi|323477620|gb|ADX82858.1| PP-loop domain protein [Sulfolobus islandicus HVE10/4]
          Length = 323

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 88/244 (36%), Gaps = 27/244 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRY 72
           + LV    IL+AVSGG DS+ L   L   ++       K  A +++  +R     ++V+ 
Sbjct: 42  QELVNSNKILLAVSGGKDSLVLADTLSQFIN-----PSKLIAFNINEGIRGYNRSEDVKK 96

Query: 73  VSDVCSRLRIAHSVVSWKNSKP---------------QTGLMAAAREARYALISEHAKTI 117
           + +    L I      +K                              R  LI+E    +
Sbjct: 97  LEEYLKDLGIELIKSGFKEEVGFSLDEMLQASLKRNLNVSACTFCGGFRRKLINEAGIKV 156

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  + T H  DD+++T+ +   R    + + L G    I+    +   +P  +    + 
Sbjct: 157 DADYVATGHNLDDEVQTIIINLIRGDLLRLIRL-GDKPLIVSSKFVMRVKPLRKIYEWET 215

Query: 178 RSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNN 232
             +   +   + E       +    R +VR  +  ++      L   +++F ++  K+  
Sbjct: 216 TIYAHLKGFEFQETECPYISQKPTLRAKVRELLYKLEEKKPGTLLRILEQFDEISEKLKK 275

Query: 233 AVAM 236
              +
Sbjct: 276 EHRL 279


>gi|313221651|emb|CBY36134.1| unnamed protein product [Oikopleura dioica]
          Length = 390

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 13/203 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L+  +  +L++R    +K   +S+D  +       +  V    
Sbjct: 49  SGQKVAIGASGGKDSAVLMQVMK-ILNERYDYGLKLCLLSIDEGISGYRDHSLEEVKFHS 107

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   +   ++S+K+              +          R   +   A  +   ++ T H
Sbjct: 108 NNYGLELKILSYKDLYNWSMDEIVSVAGRKSNCTFCGVFRRQALDRGAWQLGVDIVATGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    + +       T      +   +P       +I  +     +
Sbjct: 168 NGDDVAETVLMNMLRGDVGR-LSRCTAISTADDPSGIPRVKPLKYQYEAEIVKYARHSKV 226

Query: 187 SWCEDPSNTDDRFERVRVRRFVR 209
            +            R ++R ++R
Sbjct: 227 RYFSTECTYAPGAHRGQIREYLR 249


>gi|292654746|ref|YP_003534643.1| n-type ATP pyrophosphatase superfamily protein [Haloferax volcanii
           DS2]
 gi|291372586|gb|ADE04813.1| n-type ATP pyrophosphatase superfamily [Haloferax volcanii DS2]
          Length = 321

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 19/218 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   ++ +SGG DS+ L   L          +I+  A+++   +       V    ++  
Sbjct: 53  PQTWVIGLSGGKDSVVLTHILDDTFG--RDPRIELVALTIHEGIEGYRDKSVDACVELAE 110

Query: 79  RLRIAHSVVSWKNS------------KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            L I H +V++++                    A     R  L+   A  + A  ++T H
Sbjct: 111 DLDIHHELVTYEDEFGVQMDDVVEKDPENMAACAYCGVFRRDLLERFADELGADKLLTGH 170

Query: 127 TFDDQLETVYMRSQRDYA---EKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFL 181
             DD+ +T  M           K    S        D   +I R  P      +++  + 
Sbjct: 171 NLDDEAQTALMNFFEGDLKQVAKHFDASIGDFEKRRDAGEFIPRAKPLRDVPEKEVALYA 230

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
             +++              R  +++ +  ++ +    +
Sbjct: 231 HLKDLPAHITECPHSSEAYRGEIQQLLLKLEENHPGTR 268


>gi|301057224|ref|ZP_07198353.1| PP-loop family protein [delta proteobacterium NaphS2]
 gi|300448675|gb|EFK12311.1| PP-loop family protein [delta proteobacterium NaphS2]
          Length = 266

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 77/229 (33%), Gaps = 34/229 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +    H+LVA+SGG DS+ LL  L   L  R     + +A+ VD      A      +
Sbjct: 20  KMIRDGDHVLVAISGGKDSLALLWILRERLK-RIPISYQITAVHVDPGFGGNAT---ASI 75

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISEHAKTINATLIMTAHT 127
               +     + ++         G              R  L+ E A  +    I   H 
Sbjct: 76  ESFLTSNGFDYRIIESDIGPRAHGAENRENPCFLCSRMRRKLLFEMADALECNRIALGHH 135

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTI-LYDLNLWISRPFLRCRREDIRSF------ 180
            DD +ET+++         G  +S M     L+   L + RP      + IR +      
Sbjct: 136 KDDIIETLFLNIF-----YGASISTMLPVQELFGGKLTLIRPLYLLDEDLIRRYGEKMDF 190

Query: 181 ------LLQRNISWCEDPSNTDDRFER-VR-----VRRFVRDIDLHALY 217
                       +  ED  N  + F R  R     +   +++++   L 
Sbjct: 191 PEIRLNCPSAGATKREDIKNMLNGFYRQNRKIKGNIFHALQNVNPEYLP 239


>gi|13541276|ref|NP_110964.1| ATPase [Thermoplasma volcanium GSS1]
          Length = 309

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 79/211 (37%), Gaps = 19/211 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS   L  LH +L +R   KIK  A +VD  +       +     +C+ L I 
Sbjct: 53  VALSGGKDSSVTLFLLHKILGNRKNMKIK--AFTVDEGIDGYRPSGLESAKRLCTSLGID 110

Query: 84  HSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           H  +S+ +S            P     A     R  LI+E A   +A  +      DD  
Sbjct: 111 HETISFYDSYGLTLDSIVKTNPVKIPCAYCGPLRRKLINEMADKQDADYVALGLNLDDYS 170

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           +++ M   +   ++ + +S   D  +    +    P      +++  + +  +I +  D 
Sbjct: 171 QSILMNVAKGDFDRFIRMSPQTDRKV--GLVRRIAPLRTILEKEVVLYAVTNDIPF--DS 226

Query: 193 S--NTDDRFERVRVRRFVRDIDLHALYLKMK 221
           S      R +R   R  V  +       K  
Sbjct: 227 SWCPYYSRAQRNVFREVVNKLSEENPSTKFA 257


>gi|14324659|dbj|BAB59586.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 312

 Score = 98.1 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 79/211 (37%), Gaps = 19/211 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           VA+SGG DS   L  LH +L +R   KIK  A +VD  +       +     +C+ L I 
Sbjct: 56  VALSGGKDSSVTLFLLHKILGNRKNMKIK--AFTVDEGIDGYRPSGLESAKRLCTSLGID 113

Query: 84  HSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           H  +S+ +S            P     A     R  LI+E A   +A  +      DD  
Sbjct: 114 HETISFYDSYGLTLDSIVKTNPVKIPCAYCGPLRRKLINEMADKQDADYVALGLNLDDYS 173

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           +++ M   +   ++ + +S   D  +    +    P      +++  + +  +I +  D 
Sbjct: 174 QSILMNVAKGDFDRFIRMSPQTDRKV--GLVRRIAPLRTILEKEVVLYAVTNDIPF--DS 229

Query: 193 S--NTDDRFERVRVRRFVRDIDLHALYLKMK 221
           S      R +R   R  V  +       K  
Sbjct: 230 SWCPYYSRAQRNVFREVVNKLSEENPSTKFA 260


>gi|148643088|ref|YP_001273601.1| ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|222445325|ref|ZP_03607840.1| hypothetical protein METSMIALI_00953 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350114|ref|ZP_05975531.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
 gi|148552105|gb|ABQ87233.1| predicted ATPase, PP-loop family [Methanobrevibacter smithii ATCC
           35061]
 gi|222434890|gb|EEE42055.1| hypothetical protein METSMIALI_00953 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860900|gb|EFC93198.1| ATPase, PP-loop superfamily [Methanobrevibacter smithii DSM 2374]
          Length = 288

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 13/218 (5%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS+  L AL +     ++      A+SVD  +    +  +    D   +L 
Sbjct: 33  IAVALSGGKDSVLTLHALKNYQ---NYLDFDLVAVSVDEGIEGYRQHGIDAAIDNAEKLD 89

Query: 82  IAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +     S+K  +                     R  ++++ A  + A  I T H  DD++
Sbjct: 90  VKLVQKSFKIEEGFALDDIYSGFKSACIPCGVFRRNILNKTAYDLGADKIATGHNLDDEI 149

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ++  M   R    K        D +++   +   +P      +++ ++ +  +I+   D 
Sbjct: 150 QSFLMSFARGDLIKFSKFGPELD-VIHPKLIPRIKPLWNTPEKEVGTWAILNDINIHLDE 208

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
                   R +++ F+ + +     +K    +  +  +
Sbjct: 209 CPYSHLSLRAKIKEFLNNNEDIYPGIKNNIMESFQKIL 246


>gi|258623292|ref|ZP_05718298.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Vibrio mimicus
           VM573]
 gi|262165675|ref|ZP_06033412.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus VM223]
 gi|258584424|gb|EEW09167.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Vibrio mimicus
           VM573]
 gi|262025391|gb|EEY44059.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio mimicus VM223]
          Length = 310

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 89/259 (34%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLKKSAPIS-FELVAVNLD-QKQPG---FPAHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFALFDFKSIN 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           +    I+   +  D   + 
Sbjct: 268 KDSGVINGGDIGFDKEEIA 286


>gi|145543226|ref|XP_001457299.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124425115|emb|CAK89902.1| unnamed protein product [Paramecium tetraurelia]
          Length = 322

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 15/213 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       I +A SGG DS  L+  + ++L+ +    +    +S+D  ++    D +  V
Sbjct: 45  QMFKPGEKIAIAASGGKDSTVLVHVI-TLLNKKYNYGLHLYLLSIDEGIKGYRDDSLETV 103

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                   +   ++S+K                          R   +   A  +    I
Sbjct: 104 KQNQITYDLELKILSYKELFNWSMDEVVAQIGLNNNCTYCGVFRRQSLDRGAIQLGVDKI 163

Query: 123 MTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +T H  DD  ET  M   R       K   +    D       L   +PF     ++I  
Sbjct: 164 ITGHNADDMAETFLMNLLRGDIFRLPKSTAIITGDDGDNGIATLPRCKPFKYTYEKEIVM 223

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   + + +            R  VR  +++++
Sbjct: 224 YAHYKKLIYFSTECTYSPNAFRGHVRELIKNLE 256


>gi|298375982|ref|ZP_06985938.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298267019|gb|EFI08676.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 248

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 22/196 (11%)

Query: 1   MFLSPIESVRF--FVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F    + ++   F   L+     ILV +SGG DS+ L+  L    S     + +     
Sbjct: 10  LFRKIEDKIKRAIFDYGLINDGDRILVGLSGGKDSLALVDLLGR-RSKIYCPRFEVVVAH 68

Query: 58  V---D--HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYAL 109
           +   +  +C    +  E  Y+        +   V       ++  +          R   
Sbjct: 69  IVMTNIPYC----SDRE--YLRSCAEEHDLPFIVHETSFDPSTDTRKSPCFLCSWTRRKA 122

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + E AK      I   H  DD LET+ M        +G   +      +   ++ I RP 
Sbjct: 123 LFEIAKAHKCNKIALGHHQDDILETLLMNLT----HQGAFGTMPPRLKMDKFDMEIIRPM 178

Query: 170 LRCRREDIRSFLLQRN 185
                 ++      + 
Sbjct: 179 CLVEERELIQVAAWKG 194


>gi|169350219|ref|ZP_02867157.1| hypothetical protein CLOSPI_00963 [Clostridium spiroforme DSM 1552]
 gi|169293002|gb|EDS75135.1| hypothetical protein CLOSPI_00963 [Clostridium spiroforme DSM 1552]
          Length = 252

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 74/220 (33%), Gaps = 16/220 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I V VSGG DS+ LL  L S+    +  K     + V+             V   C +
Sbjct: 30  DKICVGVSGGKDSVLLLYCL-SLYKKFADVKFDVVGVHVEMGF-PNMDFSE--VDAFCRK 85

Query: 80  LRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             I           ++    +       +   + + AL+ + AK      +  AH  DD 
Sbjct: 86  NEIELYHEPSDVYEILKLNKTDDGRLQCSLCSKFKKALVIDGAKKYGCNKVAFAHHGDDA 145

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET++M         G   +      L   ++   RP +     DI + + + NI   E 
Sbjct: 146 VETLFMNMVYG----GKIATFTPKMYLSRTDMNFIRPLVYAYESDIVAAVKEANIPIVES 201

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
               D   +R   ++ + D+       K      L  + N
Sbjct: 202 TCPADKHTKREEFKQLLNDLYKKYPQAKNNLLTSLTNEKN 241


>gi|313903353|ref|ZP_07836745.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466441|gb|EFR61963.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 304

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+  R F ++      ILVAVSGG DS+ +   L  +         +     +D  + 
Sbjct: 36  RAIKEHRMFTKN----DRILVAVSGGKDSLAVWDVLLRL-------GYEAHGFYIDLGIG 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-----------YALISE 112
           E +K     V +  +       +VS +  +   G    AR+ R             L ++
Sbjct: 85  EYSKRSTEKVRNFAAERGATLRIVSVE-EEYGLGTQELARKVRRPACSACGLNKRYLFNK 143

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A      +I+T H  DD+  T+       +          +  T      +   +P  R
Sbjct: 144 VALEGGYDVIVTGHNLDDEAATLLSNVLHWNTGYLARQAPVLEATAP--NLVKKVKPLFR 201

Query: 172 CRREDIRSFLLQRNISWC 189
               +I S+ + R I + 
Sbjct: 202 LTEREIASYCVLRGIDYI 219


>gi|152981386|ref|YP_001355128.1| hypothetical protein mma_3438 [Janthinobacterium sp. Marseille]
 gi|205830597|sp|A6T3N1|TTCA_JANMA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|151281463|gb|ABR89873.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 317

 Score = 97.7 bits (242), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 17/179 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  LL  L ++  +R+  K    A+++D   +    D    +     
Sbjct: 55  GDKVMVCLSGGKDSYALLDILMTL-RERAPIKFDIVAVNLD-QKQPNFPD--HILPAYLK 110

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I   +       +  +         +     R  ++   A  + A  I   H  DD 
Sbjct: 111 QLDIPFHIENQDTYSIVKRLIPEGKTTCSLCSRLRRGILYRVADELGANKIALGHHRDDI 170

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
           +ET ++         G  + GM   +  D    I  RP    +  D   +   +N    
Sbjct: 171 METFFLNMF-----FGAKIKGMPPKLQSDDGKHIVIRPLAYVKEADTERYAEVKNFPII 224


>gi|167750534|ref|ZP_02422661.1| hypothetical protein EUBSIR_01510 [Eubacterium siraeum DSM 15702]
 gi|167656460|gb|EDS00590.1| hypothetical protein EUBSIR_01510 [Eubacterium siraeum DSM 15702]
          Length = 377

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 77/225 (34%), Gaps = 27/225 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             I V +SGG DSM +      +     F  ++KF            +      + +   
Sbjct: 136 DRIAVCISGGKDSMLMAKLFQELHRHSDFPFEVKFIV-----MDPGYSTANRNVIEENAR 190

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           +L+I   +            +          R   +  +AK++    I   H +DD +ET
Sbjct: 191 KLKIPIEIFESDIFDSVYNIEKSPCYLCARMRRGHLYNYAKSLGCNKIALGHHYDDVIET 250

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           + M         G  +  M   +       + + RP    R +DI+++     + + +  
Sbjct: 251 ILMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREDDIKAWRDYNGLHFIQCA 305

Query: 193 S----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
                      N ++R +RV +++ +  +      ++   F+ + 
Sbjct: 306 CKFTDTCTTCNNEENRSKRVEIKQLIAKLKQTNPEVEKHIFKSVE 350


>gi|94985996|ref|YP_605360.1| PP-loop domain-containing protein [Deinococcus geothermalis DSM
           11300]
 gi|205830577|sp|Q1IX43|TTCA_DEIGD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|94556277|gb|ABF46191.1| tRNA s(2)C-32 sulfurtransferase [Deinococcus geothermalis DSM
           11300]
          Length = 289

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 21/191 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ++V +SGG DS  LL  L  +        I F  ++V+  L +      ++V
Sbjct: 26  RMIEEGDRVMVCLSGGKDSYTLLDILLHLQKR---APIHFEVVAVN--LDQGQPGFPKHV 80

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +  +RL +   +++                  A     R  ++  HA+ I AT I   
Sbjct: 81  LPEYLTRLGVPFDILTEDTYSIVKEKTPEGKTTCALCSRLRRGILYRHAREIGATKIALG 140

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQR 184
           H  DD LET++M         G  L  M   +  D     + RP       DI  +   +
Sbjct: 141 HHRDDILETLFMNMF-----FGARLKAMPPKLQSDDGTNVVIRPLAYLAERDIERYAQAK 195

Query: 185 NISWCEDPSNT 195
                  P N 
Sbjct: 196 GFPII--PCNL 204


>gi|121730376|ref|ZP_01682729.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|121627872|gb|EAX60459.1| conserved hypothetical protein [Vibrio cholerae V52]
          Length = 309

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIVEEDTYAIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           ++   I+   +  D   + 
Sbjct: 268 KNSGVINGGDIGFDKEEIA 286


>gi|15641443|ref|NP_231075.1| hypothetical protein VC1432 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590934|ref|ZP_01678255.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153817918|ref|ZP_01970585.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153823754|ref|ZP_01976421.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227081604|ref|YP_002810155.1| hypothetical protein VCM66_1388 [Vibrio cholerae M66-2]
 gi|229504993|ref|ZP_04394503.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX
           330286]
 gi|229511338|ref|ZP_04400817.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33]
 gi|229518456|ref|ZP_04407900.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9]
 gi|229607996|ref|YP_002878644.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           MJ-1236]
 gi|254848552|ref|ZP_05237902.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255745811|ref|ZP_05419759.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS
           101]
 gi|262158910|ref|ZP_06030022.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE
           91/1]
 gi|298498489|ref|ZP_07008296.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|81544966|sp|Q9KS29|TTCA_VIBCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790148|sp|C3LMC8|TTCA_VIBCM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|9655931|gb|AAF94589.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547209|gb|EAX57334.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126511545|gb|EAZ74139.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126518723|gb|EAZ75946.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227009492|gb|ACP05704.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229345171|gb|EEO10145.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC9]
 gi|229351303|gb|EEO16244.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae B33]
 gi|229357216|gb|EEO22133.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae BX
           330286]
 gi|229370651|gb|ACQ61074.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           MJ-1236]
 gi|254844257|gb|EET22671.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255736886|gb|EET92283.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholera CIRS
           101]
 gi|262029095|gb|EEY47747.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae INDRE
           91/1]
 gi|297542822|gb|EFH78872.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 310

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIVEEDTYAIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           ++   I+   +  D   + 
Sbjct: 268 KNSGVINGGDIGFDKEEIA 286


>gi|59711918|ref|YP_204694.1| C32 tRNA thiolase [Vibrio fischeri ES114]
 gi|197335040|ref|YP_002156106.1| tRNA s2C32 biosynthesis protein TtcA [Vibrio fischeri MJ11]
 gi|75353997|sp|Q5E590|TTCA_VIBF1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790149|sp|B5FE41|TTCA_VIBFM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|59480019|gb|AAW85806.1| predicted C32 tRNA thiolase [Vibrio fischeri ES114]
 gi|197316530|gb|ACH65977.1| tRNA s2C32 biosynthesis protein TtcA [Vibrio fischeri MJ11]
          Length = 307

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 88/257 (34%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  +L  L S+            A+++D   ++        + +   
Sbjct: 36  GDRIMVCLSGGKDSFTMLDILMSLKKSAPIS-FDLIAVNLD---QKQPGFPAHILPEYLE 91

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L + + +V                   +     R  ++   AK + AT I   H  DD 
Sbjct: 92  KLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDI 151

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+++         G  L GM   ++ D     + RP   CR +DI  +   R+     
Sbjct: 152 LETMFLNMF-----YGGKLKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYADMRDYPII- 205

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  V++ +   D          F  ++  V + +A           R
Sbjct: 206 -PCNLCGSQPNMQRQNVKQMLNTWDKQFPGRIETMFTAMQNVVPSHLADFNTFDFKSINR 264

Query: 248 SIIAISQDILNIDSTLL 264
               I+   +  D   +
Sbjct: 265 DSGVINGGDIGFDKEEM 281


>gi|197117012|ref|YP_002137439.1| tRNA (2-thio-C32)-thioltransferase [Geobacter bemidjiensis Bem]
 gi|253699272|ref|YP_003020461.1| PP-loop domain protein [Geobacter sp. M21]
 gi|254790130|sp|B5ED57|TTCA_GEOBB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|259550626|sp|C6E087|TTCA_GEOSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|197086372|gb|ACH37643.1| tRNA (2-thio-C32)-thioltransferase [Geobacter bemidjiensis Bem]
 gi|251774122|gb|ACT16703.1| PP-loop domain protein [Geobacter sp. M21]
          Length = 255

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVC 77
              + VAVSGG DS  +L  L ++   R+  + +  AI++D   R    D    ++ +  
Sbjct: 29  GDRVAVAVSGGKDSYTMLHMLETLRR-RAPVRYELVAINIDSGYRGYRADIIEEHLREHG 87

Query: 78  SRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
               +    H  +  +  +P +   +     +   +   A+      +   H  DD +ET
Sbjct: 88  FTYHMEKTDHYDIISEKRRPNSSYCSICARLKRGTLYTLAQQYGCNKLALGHHMDDFIET 147

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           + +      + K M  S + D  +      + RP +    ++I  F    
Sbjct: 148 LLLNQFFVGSLKAMAPSMLADNGV----TTVIRPLVYVPEKEIIPFSRNN 193


>gi|11499188|ref|NP_070424.1| hypothetical protein AF1595 [Archaeoglobus fulgidus DSM 4304]
 gi|2648962|gb|AAB89651.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 304

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 83/214 (38%), Gaps = 18/214 (8%)

Query: 8   SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            V+  V+    +     I +A+SGG DS+ L   L+ +   RS   ++F AI++D  +  
Sbjct: 34  RVKLAVKKYDMIQKGDRIAIALSGGKDSVTLAFVLNKLYGFRS--DLEFFAITIDEGIAG 91

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEHA 114
                V     V  +L + H VVS++            +            R  L++  A
Sbjct: 92  YRPPTVEIARKVTEQLGMEHLVVSFEENFGMTLDEMVKRGDKKPCTYCGVFRKYLLNRTA 151

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + + AT + T H  DD+ +T+ +       E+   ++ +    + +  +   +PF     
Sbjct: 152 REMGATKLATGHNLDDETQTILLNFLNADMER---MARLVPQRVQEGLVVRIKPFRYVYE 208

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
           +++  +     +    D         R  VR F+
Sbjct: 209 KEVVVYGFLHELPMDFDECPYSHFPVRAAVRDFL 242


>gi|221058074|ref|XP_002261545.1| PP-loop family protein [Plasmodium knowlesi strain H]
 gi|194247550|emb|CAQ40950.1| PP-loop family protein, putative [Plasmodium knowlesi strain H]
          Length = 404

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 13/152 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I +AVSGG DS  L   L  +    ++ K     +++D  ++    D ++ V  +  
Sbjct: 35  KDKICIAVSGGKDSSVLAHVLVHIKRKYNY-KWDLFLLAIDEGIKGYRDDSLKIVFKLQE 93

Query: 79  RLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +  +   V+ +++              +          R   +   A   NAT ++T H 
Sbjct: 94  KYNLPLKVLKFEDIFTYTMDTVVSFIGKKNNCTVCGVFRRQAMERGALLFNATKLVTGHN 153

Query: 128 FDDQLETVYMRSQRDYAEKGM-GLSGMCDTIL 158
            DD  ET+ M   R   EK   G+  M +  +
Sbjct: 154 ADDLAETILMNMCRGDLEKLAKGVDSMSEMKM 185


>gi|159905703|ref|YP_001549365.1| PP-loop domain-containing protein [Methanococcus maripaludis C6]
 gi|159887196|gb|ABX02133.1| PP-loop domain protein [Methanococcus maripaludis C6]
          Length = 324

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 33/206 (16%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLRE--TAKDEV 70
           +     ILV +SGG DS+ LL  L      R    +K  A++VD     +R    +   V
Sbjct: 72  IFPKDKILVGLSGGKDSLALLHLL---EPYRRKYGVKIYAVTVDLNINGIRPWVQSNKNV 128

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMA----AAREARYALISEHAKTI 117
             +S+ C  L I H +++            S+   G+      +    R  +++ +AK  
Sbjct: 129 EKISEHCKNLNIPHEIIANDGNVVEMSKILSENTKGIEYSPCFSCSMVRRHVLTNYAKNN 188

Query: 118 ----NATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWI------- 165
               +   I   HT +D  +T+     +    K +  +    +T +   +  +       
Sbjct: 189 FETDSNVKIAIGHTLEDNSDTIMANIFKGNVIKALEPIKNFNETDVDFKDFKLNLKSCCM 248

Query: 166 SRPFLRCRREDIRSFLLQRNISWCED 191
            RP L    E I   L++  I +  D
Sbjct: 249 IRPMLNVSEEKIVKALVECGIEYYHD 274


>gi|288561212|ref|YP_003424698.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
 gi|288543922|gb|ADC47806.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
          Length = 285

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 75/215 (34%), Gaps = 12/215 (5%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L+     I +A+SGG DS+  L AL +      F   +  AI VD  +    +  +   
Sbjct: 24  QLIKEGEKIAIALSGGKDSVLTLHALKNYKDSADF-DFELVAILVDEGIDGYRQHGIDAA 82

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMT 124
            +    L I     S+K  +                     R  ++++ A  I A  I T
Sbjct: 83  VNNAQLLEIPLIQKSFKEEEGFALDDIYSYFKSACIPCGVFRRNILNKTAYEIGADKIAT 142

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD++++  M   R    K        D  +++  +   +P      +++  + +  
Sbjct: 143 GHNLDDEIQSFLMSFSRGDTVKFSKFGPELD-QIHEKLVPRIKPLWNTPEKEVGMWAILN 201

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
            +    D     +   R +++ F+   +      K
Sbjct: 202 GVEIHLDECPYSNLSLRAKIKEFLNKTESKHPGTK 236


>gi|145341094|ref|XP_001415650.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575873|gb|ABO93942.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 199

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 65/193 (33%), Gaps = 22/193 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++++ F   +     IL+ +SGG DS+ +L  L  ++S    G    +  +VD       
Sbjct: 14  QAIQDF-DMIQPGDRILLGLSGGKDSLAMLHILMCMMSRYPPGTFTLACATVDPGT---- 68

Query: 67  KDEVRY----VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKT 116
                +    +      L I +  +                + A     +   +    + 
Sbjct: 69  ---EAFNPRPLIPYVESLGIEYHYLEEEIMAMADAHMTGDSICAFCARMKRGALYTCCRK 125

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++ A   DD +E+  M         G   +     ++ + ++ + RP +  R + 
Sbjct: 126 YGYNKLVLAQHLDDCVESFLM----STMYNGTMRTMKASYLIDEGDITVIRPAIYLREKA 181

Query: 177 IRSFLLQRNISWC 189
           +R F  +  +   
Sbjct: 182 LRDFSYEAGLPVI 194


>gi|303242462|ref|ZP_07328943.1| PP-loop domain protein [Acetivibrio cellulolyticus CD2]
 gi|302589986|gb|EFL59753.1| PP-loop domain protein [Acetivibrio cellulolyticus CD2]
          Length = 237

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 87/221 (39%), Gaps = 18/221 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF--GKIKFSAISVDHCLRETAKDEVRYV 73
           +     I V VSGG DS+     L  +   +SF   K +  A+++   + E    ++  V
Sbjct: 21  IQEGDRIAVGVSGGKDSL---ALLVLLKQLQSFFPAKFELEAVTLTMGIGEF---DLTPV 74

Query: 74  SDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            ++C  + + +++           ++ +T   +     +   +   AK ++   +  AH 
Sbjct: 75  KELCKSIGVNYTIEETVIGKIVFEARDETNPCSLCANLKRGALHNVAKRLDCNKVALAHH 134

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET  +         G   +    T L    L++ RP +    + ++ ++   N+ 
Sbjct: 135 RDDVIETFLL----STLYAGKFQTFSPVTYLKRKELYLIRPMIYIEEKHVKEYIKANNLV 190

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
               P + D + +R  ++  + ++      +K   F  ++ 
Sbjct: 191 TVPSPCHVDGKTKRQYIKELLMEMHKENRNIKNNIFGAIKR 231


>gi|146412528|ref|XP_001482235.1| hypothetical protein PGUG_05255 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 369

 Score = 97.3 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L ++    ++G +    +S+D  +     D +  V
Sbjct: 52  QLFKPGDKVAIGASGGKDSTVLASVLKTLNEKYNYG-LTLVLLSIDEGIVGYRDDSLATV 110

Query: 74  SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   ++S+K+                         R   +   A  +    +
Sbjct: 111 KRNQIQYEMPLEIISYKDLYNWSMDEIVSCAGIRSSCTYCGVLRRQALDRGAAKLEIDHV 170

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ETV M   R    +   L   C  +       I R  PF    +++I  +
Sbjct: 171 VTGHNADDMAETVLMNLLRGDIAR---LERSCSILTLSEGSPIKRSKPFKYTYQKEIVLY 227

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +     +      R   R  ++ ++
Sbjct: 228 AHYKKLDYFSTECSYAPEAFRGTARELLKALE 259


>gi|333031359|ref|ZP_08459420.1| PP-loop domain protein [Bacteroides coprosuis DSM 18011]
 gi|332741956|gb|EGJ72438.1| PP-loop domain protein [Bacteroides coprosuis DSM 18011]
          Length = 249

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 36/211 (17%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---- 58
              I+ +R + R +    HIL+A+SGG DS+ L   +   +      K K SA  V    
Sbjct: 16  RRLIQGIRDY-RLIEDGDHILIAISGGKDSLALAELMAERVKILK-PKFKLSAAHVVMTN 73

Query: 59  -----DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYAL 109
                DH           Y+      L I   ++         K ++     +   R  L
Sbjct: 74  VSYESDH----------SYIQHFIEDLGIPFYLLETSFDPSADKRKSPCFLCSWNRRKQL 123

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               AKT+    I   H  DD L T+ M     +      +  M     +D+   I RP 
Sbjct: 124 FE-LAKTLGCNKIALGHHMDDILATLLMNMT--FQGSFSTMPPMLKMSKFDM--TIIRPM 178

Query: 170 LRCRRED------IRSFLLQRNISWCEDPSN 194
                +D      +R++  Q      E  +N
Sbjct: 179 CLIEEKDLIALSALRAYKKQIKNCPYESETN 209


>gi|229521531|ref|ZP_04410950.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM
           11079-80]
 gi|229341629|gb|EEO06632.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TM
           11079-80]
          Length = 310

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           ++   I+   +  D   + 
Sbjct: 268 KNSGVINGGDIGFDKEEIA 286


>gi|153217159|ref|ZP_01950923.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153803581|ref|ZP_01958167.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153827170|ref|ZP_01979837.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|153830588|ref|ZP_01983255.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|229515797|ref|ZP_04405256.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21]
 gi|229523484|ref|ZP_04412889.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv.
           albensis VL426]
 gi|254286121|ref|ZP_04961081.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262190246|ref|ZP_06048519.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT
           5369-93]
 gi|297579020|ref|ZP_06940948.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|124113825|gb|EAY32645.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124120879|gb|EAY39622.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|148873915|gb|EDL72050.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|149738932|gb|EDM53254.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150423790|gb|EDN15731.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|229337065|gb|EEO02082.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae bv.
           albensis VL426]
 gi|229347566|gb|EEO12526.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae TMA 21]
 gi|262033864|gb|EEY52331.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae CT
           5369-93]
 gi|297536614|gb|EFH75447.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 310

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           ++   I+   +  D   + 
Sbjct: 268 KNSGVINGGDIGFDKEEIA 286


>gi|290475465|ref|YP_003468353.1| hypothetical protein XBJ1_2463 [Xenorhabdus bovienii SS-2004]
 gi|289174786|emb|CBJ81587.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 304

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 86/264 (32%), Gaps = 24/264 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            + +     I+V +SGG DS  LL  L ++            A+++D   +        +
Sbjct: 28  FKMIEEGDRIMVCLSGGKDSYTLLSILQNLQKSAPV-NFSLVAVNLD-QKQPG---FPEH 82

Query: 73  VS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMT 124
           +       L I + +V                   +     R  ++   A  + AT I  
Sbjct: 83  ILPAYLEELGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIAL 142

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183
            H  DD L+TV++         G  L GM   ++ D    I  RP   CR +DI  +   
Sbjct: 143 GHHRDDILQTVFLNMF-----YGGKLKGMPPKLISDDGKHIVIRPLAYCREKDIERYAEA 197

Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           R       P N        +R  ++  +RD D          F+ ++  V + ++     
Sbjct: 198 RAFPII--PCNLCGSQPNLQRQVIKDLLRDWDKRYPGRIETMFRAVQNVVPSHLSDFNLF 255

Query: 241 YLTVHMRSIIAISQDILNIDSTLL 264
                      I    L  D   L
Sbjct: 256 DFKNITHGSEVIDGGDLAFDREEL 279


>gi|262038871|ref|ZP_06012218.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia
           goodfellowii F0264]
 gi|261747122|gb|EEY34614.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia
           goodfellowii F0264]
          Length = 273

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 16/191 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++V  F   L+     I + VSGG DS+ L+   H +  DRS    +F A+S++   
Sbjct: 36  KFVKAVNDF--DLIEDGDKIAIGVSGGKDSLLLVKLFHELKKDRSR-NFEFKAVSLNPGF 92

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTI 117
           RE+   ++         L I  +++        N K +        + R  ++ +  + +
Sbjct: 93  RES---DLSNFKRNLENLNIDCAIIDTNIWEIANEKAKDYPCFLCAKMRRGILYKKVEEL 149

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +         G   +          NL + RP +  R  DI
Sbjct: 150 GYNKLTLGHHFDDVIETTMINMF----YAGTLKTMTPKVKSTSGNLSLIRPLIYVREADI 205

Query: 178 RSFLLQRNISW 188
             +  +  I  
Sbjct: 206 IEYTKENGIRP 216


>gi|311103569|ref|YP_003976422.1| PP-loop family protein [Achromobacter xylosoxidans A8]
 gi|310758258|gb|ADP13707.1| PP-loop family protein [Achromobacter xylosoxidans A8]
          Length = 322

 Score = 97.3 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 75/222 (33%), Gaps = 20/222 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L  +   R+  K +  A+++D   +    D    + +   
Sbjct: 47  GDRVMVCLSGGKDSYAMLDILLQLQK-RAPFKFELIAVNLD-QKQPGFPD--HILPEYLK 102

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L +   +       +  +  +    + +     R  ++   A  + AT I   H  DD 
Sbjct: 103 TLGVPFHIETQDTYSIVTRVLEEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDDI 162

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L T ++        KGM        +  D    + RP       D+ ++   +       
Sbjct: 163 LGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVPETDLIAYAELKQFPII-- 216

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P N        +R  V R +++ D          F  L   V
Sbjct: 217 PCNLCGSQQNLKRKEVGRMIKEWDKQHPGRSWNVFNALSRVV 258


>gi|78484527|ref|YP_390452.1| PP-loop [Thiomicrospira crunogena XCL-2]
 gi|78362813|gb|ABB40778.1| PP-loop family protein [Thiomicrospira crunogena XCL-2]
          Length = 279

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 22/230 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRY 72
           + +     IL+ +SGG DSM LL+ L  +    S  K + +A ++D          +   
Sbjct: 51  QMIREGDRILLGLSGGKDSMALLVILKHLQR-HSPVKFELAACTID----PEIPGFDPSP 105

Query: 73  VSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           + +  + + + +       V             +     +   +    +     ++  A 
Sbjct: 106 LKEWVASMEVPYFYESEDLVALADAHMKGDSFCSFCARHKRGKLYTVCRREGYNVLALAQ 165

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  E++ M +      + M    + +    + ++ I RP +R R    R+F     +
Sbjct: 166 HLDDLAESLLMSAFNAGELRTMKAHYLNN----EKDIRIIRPLVRVRESQTRAFSENAEL 221

Query: 187 SWCEDPSNTDDRF----ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
               D  N    +    ER R++  + + + H  +L    ++ ++  V +
Sbjct: 222 PIIPD--NCPACYSKPQERQRMKELLLEQEKHNKHLYANLWRAMQPLVAD 269


>gi|311258078|ref|XP_003127439.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Sus
           scrofa]
          Length = 304

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 20/205 (9%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           +  SGG DS  L   L  +        I    ++VD  +       +  V    +R  + 
Sbjct: 11  LGASGGKDSTVLAHVLRELAPRLG---ISLRLVAVDEGIGGYRDAALAAVRRQAARWELP 67

Query: 84  HSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLIMTAHT 127
            +VV++ +      + A AR                  R   + E A+ + AT ++T H 
Sbjct: 68  LTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLVGATHVVTGHN 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD  ETV M   R  A +     G+         L   RP     ++++  +   R + 
Sbjct: 128 ADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQLASQKEVVLYAHFRRLD 186

Query: 188 WCEDPSNTDDRFERVRVRRFVRDID 212
           +  +         R   R  ++ ++
Sbjct: 187 YFSEECVYAPEAFRGHARDLLKQLE 211


>gi|297568331|ref|YP_003689675.1| PP-loop domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296924246|gb|ADH85056.1| PP-loop domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 291

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 77/252 (30%), Gaps = 38/252 (15%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-------------- 61
           L     +++AVSGG DS+ L   L  +   ++    +   + +D                
Sbjct: 44  LADGDRVMIAVSGGIDSLVLCRLL-DLWRRKAPIHYELLPVHLDMGFAGYRPRPGLYGGG 102

Query: 62  -LRETAKDEVR------------YVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAA 102
            L   A                  V +   +L + + +           ++         
Sbjct: 103 PLPPEAGALQADGLLPPLPGTGAAVQEQLEKLGLPYLIEETTYGPEALAAEEGKNGCYHC 162

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
              R   +   A+  N   +   H  +D +ET ++             + + +  L+   
Sbjct: 163 SSRRRNRLFALAREHNCNKLALGHHQEDIIETFFLNLLYGGNIS----TMIPNQRLFAGR 218

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKK 222
           L + RP     +E I+       ++   +P    D  +R  VR  VR +      +    
Sbjct: 219 LHLIRPLALLSKEMIQQLGRLFAVAAVPNPCPLTDLSKRHTVRTMVRQLTADDPRITANI 278

Query: 223 FQDLRVKVNNAV 234
           F  L    ++ +
Sbjct: 279 FAALGNVRSDYL 290


>gi|146304252|ref|YP_001191568.1| PP-loop domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145702502|gb|ABP95644.1| PP-loop domain protein [Metallosphaera sedula DSM 5348]
          Length = 318

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 80/227 (35%), Gaps = 23/227 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE--TAKDEVRYVSDVC 77
            + VAVSGG DS  LL  L  +     F   +   I++D  + R    +     +     
Sbjct: 49  RVAVAVSGGKDSTTLLHVLAKLSGKMGF---EVVGINIDLGIDRGTKYSSLSTEFAVKNF 105

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALISEHAKTINATLIMTAHT 127
            +L + + VVS K     T   A  +  R            ++ E A+ + A ++ T H 
Sbjct: 106 EKLGVEYKVVSLKEKHGFTIDEAKVKIKRPVCSTCGLVKRYVLEEAAQELGADVLATGHN 165

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNI 186
            +D            ++     L+ +      +   +   +P      ++  ++ L   I
Sbjct: 166 LNDMA---VFVLSGYHSGDLSNLARLRAVSPAENGYIRKIKPLFLVSEKETTTYALINGI 222

Query: 187 SWCEDPSNTDDRF---ERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            +  D    + R       ++RR + + +       ++  ++   K+
Sbjct: 223 PFIMDSCPNNPRVGGPTSDKLRRIIENAEDEIPGFMLRLVENFETKI 269


>gi|324512165|gb|ADY45046.1| Cytoplasmic tRNA 2-thiolation protein 1 [Ascaris suum]
          Length = 234

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 18/178 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L+++     +G ++   +S+D  ++    D ++ V    
Sbjct: 47  RGEKVAIGASGGKDSTVLAYLLNTLNKRYDYG-VELLLLSIDEGIQGYRDDSLKAVERNR 105

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +  + +S+K+                         R   +   A  + A  ++T H
Sbjct: 106 LQYGLPLTTLSYKDLYGWTMDEIVAKIGTKNNCTFCGVFRRQALDRGALMLGANKLVTGH 165

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLL 182
             DD  ETV M   R    +       C TI+   +  + R  P      +DI  +  
Sbjct: 166 NADDMAETVLMNLLRGDIAR----LQRCATIVTGSDDCLPRAKPLKYTLEKDIVMYAH 219


>gi|261343943|ref|ZP_05971588.1| PP-loop family protein [Providencia rustigianii DSM 4541]
 gi|282568332|gb|EFB73867.1| PP-loop family protein [Providencia rustigianii DSM 4541]
          Length = 304

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 85/257 (33%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L S+            A+++D   +        ++     
Sbjct: 34  GDRIMVCLSGGKDSYTLLAILQSLQKSAPIS-FSLVAVNLD-QKQPG---FPEHILPAYL 88

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 89  DELGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F   +      
Sbjct: 149 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEAKGFPII- 203

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  +RD D          F   +  V++ +             
Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFSATQNVVSSHLCDTTLFDFKNISH 262

Query: 248 SIIAISQDILNIDSTLL 264
               I+   +  D   L
Sbjct: 263 GDAVINGGDMAFDREEL 279


>gi|255539134|ref|XP_002510632.1| cancer-associatedprotein protein, putative [Ricinus communis]
 gi|223551333|gb|EEF52819.1| cancer-associatedprotein protein, putative [Ricinus communis]
          Length = 361

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 68/215 (31%), Gaps = 20/215 (9%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L  + + R    +    +SVD  +     D +  V
Sbjct: 56  HLFKPGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEGITGYRDDSLETV 114

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS+K+                         R   +   A  +    +
Sbjct: 115 KRNEIQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAALLKVDKV 174

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR---- 178
            T H  DD  ETV +   R    +         T   D  +   +PF     ++I     
Sbjct: 175 ATGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFKYTYEKEINLNQI 232

Query: 179 -SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            ++   + + +            R   R F++D++
Sbjct: 233 FTYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLE 267


>gi|291224155|ref|XP_002732071.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like
           [Saccoglossus kowalevskii]
          Length = 353

 Score = 96.9 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 70/204 (34%), Gaps = 18/204 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +  SGG DS  L   L  +L+D+    +K   +SVD  +     D +  V     +  
Sbjct: 52  VAIGASGGKDSTVLAYVLK-LLNDKYDYGLKLILLSVDEGITGYRDDSLTTVKRNQKQYD 110

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   +VS++                          R   +   A  + A  I+T H  DD
Sbjct: 111 LPLKIVSYEELYGWTMDAIVKEIGLKNNCTFCGVFRRQALDRGAVLVEADKIVTGHNADD 170

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISW 188
             ETV M   R    +       C +I      ++ R  P      ++I  +   + + +
Sbjct: 171 IAETVLMNVLRGDIARLR----RCTSITTGNEGYLPRCKPLKYTYEKEIVMYAYFKKLDY 226

Query: 189 CEDPSNTDDRFERVRVRRFVRDID 212
                       R   R F++D++
Sbjct: 227 FSTECIYSPNAYRGYARAFLKDLE 250


>gi|290769934|gb|ADD61703.1| putative protein [uncultured organism]
          Length = 393

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 12/180 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM +      +     F   +   + +D    E  +  + + 
Sbjct: 147 ELVKPGDKIAVCISGGKDSMLMAKLFQELKRHNKFP-FELVFLVMDPGYNEANRAVIEHN 205

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + +   L I  +V   +        +          R   +   AK +    I   H +D
Sbjct: 206 AKL---LGIPITVFETEIFDAVYNVEKSPCYLCARMRRGYLYSKAKELGCNKIALGHHYD 262

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        + M       +  ++  + + RP    R  DI+ +    ++ + 
Sbjct: 263 DVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMQLIRPMYLIREADIKHWRDYNDLHFI 319


>gi|212704444|ref|ZP_03312572.1| hypothetical protein DESPIG_02500 [Desulfovibrio piger ATCC 29098]
 gi|212672165|gb|EEB32648.1| hypothetical protein DESPIG_02500 [Desulfovibrio piger ATCC 29098]
          Length = 253

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 20/184 (10%)

Query: 16  LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-- 72
           +++P   I VAVSGG DS  LL  LH +       + +  AI ++      +     +  
Sbjct: 25  MIWPGCRIGVAVSGGVDSFVLLKTLH-IRQGIVPFRFEIMAIHLNPGFDPQS-----HMP 78

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-------ARYALISEHAKTINATLIMTA 125
           ++   S+  I   +                R         R   + E       T +   
Sbjct: 79  LAAWLSQHGIPSHLEVTDFGPHAHSAENQRRSPCFRCAWLRRKRLFELCSQYRLTHLALG 138

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +D + T +M   R+    GM +    +   +   L + RP L   ++ I     Q  
Sbjct: 139 HNAEDLVSTFFMNLCRNGRVDGMSM----NEPFFGGKLHLIRPLLLVEKKYIIKAAKQWE 194

Query: 186 ISWC 189
           +   
Sbjct: 195 LPLW 198


>gi|226711464|sp|A5DPQ4|CTU1_PICGU RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|190348662|gb|EDK41157.2| hypothetical protein PGUG_05255 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 369

 Score = 96.5 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 18/212 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L ++    ++G +    +S+D  +     D +  V
Sbjct: 52  QLFKPGDKVAIGASGGKDSTVLASVLKTLNEKYNYG-LTLVLLSIDEGIVGYRDDSLATV 110

Query: 74  SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   ++S+K+                         R   +   A  +    +
Sbjct: 111 KRNQIQYEMPLEIISYKDLYNWSMDEIVSCAGIRSSCTYCGVLRRQALDRGAAKLEIDHV 170

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSF 180
           +T H  DD  ETV M   R    +   L   C  +       I R  PF    +++I  +
Sbjct: 171 VTGHNADDMAETVLMNLLRGDIAR---LERSCSILTSSEGSPIKRSKPFKYTYQKEIVLY 227

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
              + + +     +      R   R  ++ ++
Sbjct: 228 AHYKKLDYFSTECSYAPEAFRGTARELLKALE 259


>gi|237841839|ref|XP_002370217.1| aminotransferase class V domain-containing protein, conserved
            [Toxoplasma gondii ME49]
 gi|211967881|gb|EEB03077.1| aminotransferase class V domain-containing protein, conserved
            [Toxoplasma gondii ME49]
 gi|221482684|gb|EEE21022.1| PP-loop domain-containing protein, putative [Toxoplasma gondii GT1]
 gi|221503122|gb|EEE28828.1| PP-loop domain-containing protein, putative [Toxoplasma gondii VEG]
          Length = 1513

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 25/242 (10%)

Query: 7    ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            E++R F   +     +LV VSGG DS+ LL  L  +   R+      +A +VD       
Sbjct: 1155 EAIRSF-DMIRDGDRLLVGVSGGKDSLTLLHVLRDLRR-RAPIHFSLAAATVD------- 1205

Query: 67   KDEVRYV----SDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKT 116
                 +           L I +  +        K    +  + A     +  L+    + 
Sbjct: 1206 PVTPEFCPQPLIKYMEDLGIRYHYLRLPIMALAKERMQRQSICAFCSRLKRGLLYSCMRK 1265

Query: 117  INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                +++     DD  E+  M +  +     M    +      D +L I RP +  R ++
Sbjct: 1266 HGYNVLVLGQHLDDACESFLMSAFHNGVLNTMKGHYVNA----DGDLRICRPLITTREKE 1321

Query: 177  IRSFLLQRNISWCEDPSNTDDRF--ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
               F  +  +    D          ER R++  + + ++   +L     + L   +  + 
Sbjct: 1322 TAEFAARHRLPVIADNCPACFAAPKERHRMKMLLSEQEMEFPHLFQNLLKSLTPLLAISA 1381

Query: 235  AM 236
            A 
Sbjct: 1382 AE 1383


>gi|147674407|ref|YP_001216989.1| hypothetical protein VC0395_A1043 [Vibrio cholerae O395]
 gi|262169273|ref|ZP_06036965.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC27]
 gi|205830637|sp|A5F888|TTCA_VIBC3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|146316290|gb|ABQ20829.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227013348|gb|ACP09558.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|262022086|gb|EEY40795.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae RC27]
          Length = 310

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  DSLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           ++   I+   +  D   + 
Sbjct: 268 KNSGVINGGDIGFDKEEIA 286


>gi|95007143|emb|CAJ20364.1| hypothetical protein, conserved [Toxoplasma gondii RH]
          Length = 1443

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 82/242 (33%), Gaps = 25/242 (10%)

Query: 7    ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            E++R F   +     +LV VSGG DS+ LL  L  +   R+      +A +VD       
Sbjct: 1085 EAIRSF-DMIRDGDRLLVGVSGGKDSLTLLHVLRDLRR-RAPIHFSLAAATVD------- 1135

Query: 67   KDEVRYV----SDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKT 116
                 +           L I +  +        K    +  + A     +  L+    + 
Sbjct: 1136 PVTPEFCPQPLIKYMEDLGIRYHYLRLPIMALAKERMQRQSICAFCSRLKRGLLYSCMRK 1195

Query: 117  INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                +++     DD  E+  M +  +     M    +      D +L I RP +  R ++
Sbjct: 1196 HGYNVLVLGQHLDDACESFLMSAFHNGVLNTMKGHYVNA----DGDLRICRPLITTREKE 1251

Query: 177  IRSFLLQRNISWCEDPSNTDDRF--ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
               F  +  +    D          ER R++  + + ++   +L     + L   +  + 
Sbjct: 1252 TAEFAARHRLPVIADNCPACFAAPKERHRMKMLLSEQEMEFPHLFQNLLKSLTPLLAISA 1311

Query: 235  AM 236
            A 
Sbjct: 1312 AE 1313


>gi|260815136|ref|XP_002602330.1| hypothetical protein BRAFLDRAFT_127327 [Branchiostoma floridae]
 gi|229287638|gb|EEN58342.1| hypothetical protein BRAFLDRAFT_127327 [Branchiostoma floridae]
          Length = 471

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 27/213 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  L   +  +L++R    +    +SVD  +     D +  V     +  
Sbjct: 52  VAIAASGGKDSTVLAHLMK-LLNERHDYGLTLFLLSVDEGITGYRDDSLETVKRNQQQYE 110

Query: 82  IAHSVVSWKNSKPQT--------------------GLMAAAREARYALISEHAKTINATL 121
           +   VVS+K     +                             R   +   A  +    
Sbjct: 111 LPLKVVSYKILSTHSEKQELYGWTMDEIVRQIGLKNNCTFCGVFRRQALYRGAMMLGVDK 170

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRS 179
           I+T H  DD  ETV M   R    +       C  I+   +  I R  PF     ++I  
Sbjct: 171 IVTGHNADDVAETVIMNVLRGDIAR----LQRCTAIVTGTDGAIPRCKPFKYTYEKEIVM 226

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
           +   + + +            R   R +++D++
Sbjct: 227 YAYFKKLDYFSTECIYSPNAYRGHARTYLKDLE 259


>gi|317404582|gb|EFV84987.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Achromobacter
           xylosoxidans C54]
          Length = 338

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 18/222 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75
               ++V +SGG DS  +L  L  +     F   +  A+++D   +     ++  RY+++
Sbjct: 62  SGDRVMVCLSGGKDSYAMLDILLQLQKRAPFP-FELVAVNLD-QKQPGFPADILPRYLTE 119

Query: 76  VCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  +  I     +S+V+    + +T + +     R  ++   A  + AT I   H  DD 
Sbjct: 120 LGVKFHIETQDTYSIVTRVLEEGKT-MCSLCSRLRRGILYRVASELGATKIALGHHRDDI 178

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L T ++        KGM        +  D    + RP       D+ ++   +       
Sbjct: 179 LGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVPETDLIAYAELKQFPII-- 232

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P N     +  +R  V R +++ D          F  L   V
Sbjct: 233 PCNLCGSQENLKRKEVGRMIKEWDRQHPGRSWNVFNALSRVV 274


>gi|260768432|ref|ZP_05877366.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio furnissii CIP
           102972]
 gi|260616462|gb|EEX41647.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio furnissii CIP
           102972]
 gi|315180143|gb|ADT87057.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Vibrio furnissii NCTC 11218]
          Length = 310

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 88/258 (34%), Gaps = 24/258 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+            A+++D   +        ++  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLEILMSLQKSAPIS-FSLIAVNLD-QKQPG---FPEHILPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + L + + +V                   +     R  ++   AK + AT I   H  DD
Sbjct: 95  ASLGVEYKIVEEDTYSIVQDKVPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            +ET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 IIETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYADMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +++ +   D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNMQRQNIKQMLNAWDKQFPGRIESMFRAMQNVVPSHLADFELFDFKSID 267

Query: 247 RSIIAISQDILNIDSTLL 264
           R    I+   +  D   +
Sbjct: 268 RDSGVINGGDIGFDKEEM 285


>gi|260892095|ref|YP_003238192.1| PP-loop domain protein [Ammonifex degensii KC4]
 gi|260864236|gb|ACX51342.1| PP-loop domain protein [Ammonifex degensii KC4]
          Length = 307

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 66/199 (33%), Gaps = 22/199 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  I       R L   A ++VA+SGG DS+     L  +         +     VD  
Sbjct: 30  FLRQISRTIKKYRMLPPGARVVVALSGGKDSLVTAFVLKRL-------GYEVLGFFVDLG 82

Query: 62  LRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-- 117
           + E   + D  R V D C    I   V S K    +T    A R+ R   +    K    
Sbjct: 83  IEENNFSLDSRRAVEDFCREKEIPLEVFSLKEKFGKTIPEVARRQERICALCGVTKRHLM 142

Query: 118 -------NATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPF 169
                  NA  + T HT DD   ++     R D      GL  +     +       +P 
Sbjct: 143 NEYALAVNAYALATGHTLDDMAASLLANLTRWDLHYLAKGLPVLPPEPGFARK---IKPL 199

Query: 170 LRCRREDIRSFLLQRNISW 188
                ++I +F     I  
Sbjct: 200 ALQGEKEILAFAELHGIKP 218


>gi|327484092|gb|AEA78499.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           LMA3894-4]
          Length = 365

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + ++                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIIEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           ++   I+   +  D   + 
Sbjct: 268 KNSGVINGGDIGFDKEEIA 286


>gi|229529498|ref|ZP_04418888.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           12129(1)]
 gi|229333272|gb|EEN98758.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio cholerae
           12129(1)]
          Length = 310

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 90/259 (34%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + ++                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIIEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           ++   I+   +  D   + 
Sbjct: 268 KNSGVINGGDIGFDKEEIA 286


>gi|159041820|ref|YP_001541072.1| PP-loop domain-containing protein [Caldivirga maquilingensis
           IC-167]
 gi|157920655|gb|ABW02082.1| PP-loop domain protein [Caldivirga maquilingensis IC-167]
          Length = 337

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 69/203 (33%), Gaps = 27/203 (13%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAISVDHCL---- 62
           +VR F R +     + +AVSGG DS+ L+  L  +       K     A S+D       
Sbjct: 40  TVRRF-RLITSGDRVGIAVSGGKDSLVLMYLLGKLRRLGRIPKDTVLIAFSIDEGQPYSC 98

Query: 63  --RETAKDEVRYVSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAAREA 105
             R  +   + YV+ +     I + V  +                     T +       
Sbjct: 99  VRRANS---MDYVAKLTEEFNIEYKVFRFSELFGVTAFDIAQGLWGKGVNTHMCTICGVM 155

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLW 164
           R   ++   + +N T I T H  DD+ +TV +    +  ++           +  +  + 
Sbjct: 156 RRRAMNIVGRMLNLTKIATGHNLDDEAQTVLLNVTGNDVKRFAWFGATPSNDVAEEEFIP 215

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
             +P    R E++  +     I 
Sbjct: 216 RIKPLRFIREEEVALYAYYHGIP 238


>gi|303325586|ref|ZP_07356029.1| putative tRNA s2C32 biosynthesis protein [Desulfovibrio sp.
           3_1_syn3]
 gi|302863502|gb|EFL86433.1| putative tRNA s2C32 biosynthesis protein [Desulfovibrio sp.
           3_1_syn3]
          Length = 259

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 15/181 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     + VAVSGG DS  LL  L  +       + +  A+ ++      +      +  
Sbjct: 27  LWPGCRVGVAVSGGVDSFVLLKTLK-IRQGIVPFRFELMAVHLNPGFDPHSH---AALLP 82

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTF 128
             +R  I   +                R A       R   + E       T +   H  
Sbjct: 83  WLAREGIPAHLEVTDYGPQAHSEQNLRRSACFRCAWLRRKRLFELCARYGLTHLALGHNA 142

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D +ET ++   R+    GM +        ++  L + RP L   ++ I     Q  +  
Sbjct: 143 EDLVETFFLNLCRNGRVDGMSMC----EPFFNGGLRLIRPLLLVEKKYILKAARQWELPV 198

Query: 189 C 189
            
Sbjct: 199 W 199


>gi|313127354|ref|YP_004037624.1| hypothetical protein Hbor_26270 [Halogeometricum borinquense DSM
           11551]
 gi|312293719|gb|ADQ68179.1| conserved hypothetical protein TIGR00269 [Halogeometricum
           borinquense DSM 11551]
          Length = 322

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 19/218 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   ++ +SGG DS+ L   L          +I+  A+++   +     + V    ++  
Sbjct: 53  PERWVIGLSGGKDSVVLTHILDETFGK--DPRIEMMALTIHEGIEGYRDESVEACVELSD 110

Query: 79  RLRIAHSVVSW------------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            L++ H +V++            +         A     R  L+  +A+  +A  ++T H
Sbjct: 111 DLQMRHELVTYEEEFGVQMDDVAREDPENMAPCAYCGVFRRDLLESYAEEFSADKLLTGH 170

Query: 127 TFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
             DD+ ET  M                 L    +    D  +  ++P      +++  + 
Sbjct: 171 NLDDEAETALMNILEGDVKQMAKHFDASLGPFDERNPSDDFVPRAKPLRDIPEKEVALYA 230

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
             +++              R  ++  + D++      +
Sbjct: 231 HLKDLPAHITECPHASEAFRGEIQELMLDLEDDHPGTR 268


>gi|284166087|ref|YP_003404366.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284015742|gb|ADB61693.1| PP-loop domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 319

 Score = 96.5 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 76/219 (34%), Gaps = 19/219 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P   ++ +SGG DS+ L   LH   ++    +I+   +++   +       V    ++ 
Sbjct: 52  APQTWVIGLSGGKDSVVLTQILHDTFAE--DPRIELVGLTIHEGIEGYRDKSVDACVELA 109

Query: 78  SRLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             L I H +VS             ++        A     R  L+ ++A+ + A L++T 
Sbjct: 110 DDLDIRHELVSYEEEFGVRMDDVVEDDPENMAACAYCGVFRRDLLEKYAEKLEADLLLTG 169

Query: 126 HTFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           H  DD+ +T  M                 L  + +       +  ++P      +++  +
Sbjct: 170 HNLDDEAQTALMNFLEGDVEQIAKHFDASLGALSEREDQAEFVPRAKPLRDVPEKEVALY 229

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
               ++              R  +++ +  ++ +    +
Sbjct: 230 AHINDLPAHITECPHASEAYRGEIQQLLYGLEENHPGTR 268


>gi|332019893|gb|EGI60354.1| Cytoplasmic tRNA 2-thiolation protein 1 [Acromyrmex echinatior]
          Length = 339

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 82/244 (33%), Gaps = 18/244 (7%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   + +  SGG DS  L   L ++ ++R   ++    +S+D  +     D ++ V
Sbjct: 47  KLFKPGDKVAIGASGGKDSTVLAYVLKTL-NERYKYELDLFLLSIDEGITGYRDDSLKTV 105

Query: 74  SDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +       I   ++S+K               +          R   +   A  +    I
Sbjct: 106 TRNKDDYGIPLKILSYKELYGWTMDSIVAEIGRKNNCTFCGVFRRQALDRGAAILKVDCI 165

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFL 181
            T H  DD  ETV M   R    +   L      I    + +   +P      ++I  + 
Sbjct: 166 ATGHNADDIAETVLMNILRGDIAR---LQRCTSVITTGADSIMRCKPLKYAYEKEIVMYA 222

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-LRVKVNNAVAMLIPK 240
             +N+ +            R   R F++D++       +       +++V   V M   +
Sbjct: 223 YFKNLVYFSTECIYAPNAYRGHARAFLKDLEKIRPSSIIDIIHSGEQLQVKANVKMPERR 282

Query: 241 YLTV 244
             T+
Sbjct: 283 NCTL 286


>gi|196011850|ref|XP_002115788.1| hypothetical protein TRIADDRAFT_59846 [Trichoplax adhaerens]
 gi|190581564|gb|EDV21640.1| hypothetical protein TRIADDRAFT_59846 [Trichoplax adhaerens]
          Length = 882

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 88/239 (36%), Gaps = 22/239 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVDHCLR 63
           IE+V+ F   +     ILV +SGG DS+ LL  L      +          A ++D    
Sbjct: 636 IEAVQDF-NMIAQNDKILVCISGGKDSLSLLHTLKQYQFYARAKGIHFDIGATTID---P 691

Query: 64  ETAKDEVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           +++    R +    + L + +       + +  N      + +     +   I   A+  
Sbjct: 692 QSSGYNPRPLIKYMAELGVPYFYEEQDIITAASNVDRCDSICSFCSRLKRGRIYACARRE 751

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
              +I      DD  E+  M    +   +    +      + + +L + RPF+  R +++
Sbjct: 752 GYNVIALGQHLDDLSESFLMSIFHNGFLR----TMKACYTVREKDLRVIRPFVYVREQEL 807

Query: 178 RSFLLQRNISWCEDPSNTDDRF----ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
           + F  Q  +     P N    F    ER RV++ + + ++    L       ++  ++ 
Sbjct: 808 KIFAEQAKLPVI--PENCPACFEAPKERRRVKQLLANQEVLFPMLHQSLLSSMKPLMSR 864


>gi|253744294|gb|EET00518.1| ATPase of the PP-loop superfamily implicated in cell cycle control,
           putative [Giardia intestinalis ATCC 50581]
          Length = 349

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 47/254 (18%)

Query: 2   FLSPIESVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAI 56
           F    E V+  V   SLV P   I + VSGG DS  +L  +H++       +  ++F+ +
Sbjct: 28  FREVEEEVQRTVEKHSLVRPGESIALGVSGGKDSSVMLHIMHNLRLRYRAFYDGVRFAMV 87

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS------------------------ 92
           +V+  ++    + +  +  +  +      +V ++                          
Sbjct: 88  AVNEGIQGYRDESLACLQRLHKKYPYELKIVDFEERYGRTLDQIVNTANGDSSIHESVPL 147

Query: 93  --------------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
                            T   +     R   +S  +   + T + T H  DD  ETV + 
Sbjct: 148 KVDLEDDTGRPQPTAKTTTACSFCGILRRNSLSHGSLQTHCTKVATGHNADDNAETVLLN 207

Query: 139 SQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
             R  A K   L    + +   D  +   +P     + DI  +   + + +         
Sbjct: 208 LIRGDAAK---LVRCSEPLSDLDQGVARIKPLCHISQRDIVMYAYLQRLDFFSVECPYAT 264

Query: 198 RFERVRVRRFVRDI 211
              R + R F+  +
Sbjct: 265 TALRGKPRSFLTSL 278


>gi|212712036|ref|ZP_03320164.1| hypothetical protein PROVALCAL_03112 [Providencia alcalifaciens DSM
           30120]
 gi|212685558|gb|EEB45086.1| hypothetical protein PROVALCAL_03112 [Providencia alcalifaciens DSM
           30120]
          Length = 304

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 85/257 (33%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L ++            A+++D   +        ++     
Sbjct: 34  GDRIMVCLSGGKDSYTLLSILQNLQKSAPIS-FSLVAVNLD-QKQPG---FPEHILPAYL 88

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V        K   P+     +     R  ++   A  I AT I   H  DD
Sbjct: 89  EELGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATEIGATKIALGHHRDD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  +   +      
Sbjct: 149 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERYAKAKAFPII- 203

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  +RD D          F   +  V++ +             
Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFSATQNVVSSHLCDTELFDFKNISH 262

Query: 248 SIIAISQDILNIDSTLL 264
               I+   +  D   L
Sbjct: 263 GDAVINGGDMAFDREEL 279


>gi|281356639|ref|ZP_06243130.1| PP-loop domain protein [Victivallis vadensis ATCC BAA-548]
 gi|281316766|gb|EFB00789.1| PP-loop domain protein [Victivallis vadensis ATCC BAA-548]
          Length = 250

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 33/242 (13%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY- 72
           + +     ILV +SGG DS  LL ALH++   ++  +    A + D            + 
Sbjct: 20  KMIAAGDRILVGLSGGKDSFALLHALHALRR-KAPVEFGLIAATFDPGF-------PEFN 71

Query: 73  ---VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
              ++  C R+   H +V+       +  K            R   +   A+ +    + 
Sbjct: 72  LPGIAGYCRRMGWEHRMVALPVAEILEEKKFTATPCVLCSRLRRGKLYGLARELGCNKLA 131

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               FDD   +  M   R      MG +    +   +  + I RPF       I+S L Q
Sbjct: 132 LGQHFDDIAASFLMSLCRGQGLTTMGPNVPAKS---EPGVRIIRPFALAPESLIKSCLTQ 188

Query: 184 RNISW---CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            ++     C   +      +R   R  V ++         ++  +LR ++  ++  L P+
Sbjct: 189 WDLPAAGKCRYET-ELKAGDRAFFRNLVDEL--------AERIPNLRSQMARSLGNLQPE 239

Query: 241 YL 242
           YL
Sbjct: 240 YL 241


>gi|320528344|ref|ZP_08029506.1| PP-loop family protein [Solobacterium moorei F0204]
 gi|320131258|gb|EFW23826.1| PP-loop family protein [Solobacterium moorei F0204]
          Length = 255

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 19/228 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIAL---HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +     I V VSGG DS+ LL AL          S  +     I ++      +  +   
Sbjct: 20  IQNGDRICVGVSGGKDSILLLYALSIYQKAAKRISGKEFSVIGIHLEMGF---SDMDFTE 76

Query: 73  VSDVCSRLRIAHS--------VVSWKNSKPQTGLM-AAAREARYALISEHAKTINATLIM 123
           V     +  I +         ++    SK    +  +     +   I + A+  N   I 
Sbjct: 77  VRKFMKKHNIEYIDYPTKLYDILQLHPSKKNGNIQCSLCSTLKKGAIVKAAQEYNCNKIA 136

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            AH  DD +ET++M         G   +      L +  +   RPF+    ++I++ +  
Sbjct: 137 FAHHADDAIETLFMNMIYG----GRISTFTPAMYLKNTGMGFIRPFVYVYEDEIKNTVRH 192

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             +   +     D   +R   +  + +I     + K      L  +  
Sbjct: 193 EQLPVVKSTCPNDGFTKRQDTKELLANIYQTYPFAKKNFLTSLSNQEQ 240


>gi|219125192|ref|XP_002182870.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405664|gb|EEC45606.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 252

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 15/179 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L    HI++ VSGG DS  LL  +  +       +   +A+ VD   ++        +  
Sbjct: 22  LEEGDHIMICVSGGKDSATLLSLVKQLQRQLPI-QFNVTAVHVD---QKQPGYNGASLIA 77

Query: 76  VCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
               + I + VV+          ++P           R  ++   A T+    IM  H  
Sbjct: 78  WLEEMMIPYLVVTEDTYSVVVDKTEPGKSFCTVCSRLRRGILYSTALTLGCNKIMLGHHA 137

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           DD LET+ +        K M             +L + RP ++    DI  +    N  
Sbjct: 138 DDCLETLLLNMIHTGQTKAM----PARYTSQRGSLAVMRPLIQSMETDIAEYAHLSNFP 192


>gi|14290537|gb|AAH09037.1| ATP binding domain 3 [Homo sapiens]
          Length = 348

 Score = 96.5 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 20/215 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L     ++        I    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVRRALAPRLG---ISLQLVAVDEGIGGYRDAALAAV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
                R  +  +VV++++      + A AR                  R   + E A+ +
Sbjct: 103 RRQAVRWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT I+T H  DD  ETV M   R  A +     G+         L   RP     ++++
Sbjct: 163 GATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQFASQKEV 221

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             +   R + +  +         R   R  ++ ++
Sbjct: 222 VLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLE 256


>gi|134045270|ref|YP_001096756.1| PP-loop domain-containing protein [Methanococcus maripaludis C5]
 gi|132662895|gb|ABO34541.1| PP-loop domain protein [Methanococcus maripaludis C5]
          Length = 324

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 33/204 (16%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLRE--TAKDEVRY 72
               ILV +SGG DS+ LL  L      R    ++  A++VD     +R    +   V+ 
Sbjct: 74  PKDKILVGLSGGKDSLALLHLL---EPYRRKYGVQIYAVTVDLNINGIRPWTESNKNVKM 130

Query: 73  VSDVCSRLRIAHSVVSWKN---------SKPQTGLMA----AAREARYALISEHAKTI-- 117
           +S+ C  L I H +++            S+   G+      +    R  +++ +AK    
Sbjct: 131 ISEHCKNLNIPHEIIAHDGNVVEMSKILSENTKGIEYSPCFSCSMVRRHVLTNYAKNNFE 190

Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--------LNLWISR 167
             +   I   HT +D  +T+     +    K +      +    D         +  + R
Sbjct: 191 SDSNVKIAIGHTLEDNSDTIMANIFKGNVIKALEPIKNFNKTDVDFKDFKLNLKSCCMIR 250

Query: 168 PFLRCRREDIRSFLLQRNISWCED 191
           P L    E I   L++ +I + +D
Sbjct: 251 PMLNVSEEKIVKALVECDIEYYKD 274


>gi|297526412|ref|YP_003668436.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255328|gb|ADI31537.1| PP-loop domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 323

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 78/231 (33%), Gaps = 23/231 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+ +SGG DS+ L   L  +   R     K     ++  + E ++        + 
Sbjct: 47  KGDRVLLGLSGGKDSVVLAHILSKL---RESIGFKLYLAHINLGIGEYSEKNAEVAKKIS 103

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAA---RE---------ARYALISEHAKTINATLIMTA 125
            +      ++  +      G+   A   R           RY L++  A  + A  I T 
Sbjct: 104 EKTNAPLIILDLR-KILGVGIPELALKTRRPPCSVCGVVKRY-LLNALAVELKANSIATG 161

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQ 183
           H  DD   T  ++       +   +  +   I    +  +   +P      EDI+ +   
Sbjct: 162 HNLDDMA-TFILKEFLVQNLE--QIPKLAPRIEGVKDYLVAKIKPLYETYEEDIKKYAEL 218

Query: 184 RNISWCEDPSNTDDRFERVR-VRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
            NI + E+     D       +++ +RD++     L +   + L   +   
Sbjct: 219 NNILYVEEKCPLADETTLTWHLKKHLRDLEYRFPGLTIGFIRRLVKNIEKY 269


>gi|300711905|ref|YP_003737719.1| PP-loop domain protein [Halalkalicoccus jeotgali B3]
 gi|299125588|gb|ADJ15927.1| PP-loop domain protein [Halalkalicoccus jeotgali B3]
          Length = 333

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 79/231 (34%), Gaps = 32/231 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   ++ +SGG DS+ L   LH   +     +++   +++   +       +    ++  
Sbjct: 53  PETWVIGLSGGKDSVVLTHVLHETFAQ--DPRVEIVGLTIHEGIEGYRDKSLDACVELAD 110

Query: 79  RLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + I H VVS             ++        A     R  ++S +A+ ++A  ++T H
Sbjct: 111 EIGIRHEVVSYAEEFGVRMDDVVEDDPENMAACAYCGVFRRDVLSRYAERLDADKLLTGH 170

Query: 127 TFDDQLETVYMRSQR---------------DYAEKGMGLSGMCDTILYDLNLWISR---P 168
             DD+ +T  M                    + ++  G +G  +      +        P
Sbjct: 171 NLDDEAQTALMNFLEGDVAQIAKHFDASLGGFGDETGGSNGRNNDGTRAESDEFVPRAKP 230

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
                 +++  +   +++              R  ++R + D++ +    +
Sbjct: 231 LRDVPEKEVALYAHLKDLPAHITECPHSSEAYRGEIQRLLYDLEENHPGTR 281


>gi|288942777|ref|YP_003445017.1| PP-loop domain-containing protein [Allochromatium vinosum DSM 180]
 gi|288898149|gb|ADC63985.1| PP-loop domain protein [Allochromatium vinosum DSM 180]
          Length = 264

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVR 71
            R +     IL+ VSGG DS+ LL  L  +    +  + + + ++VD          + +
Sbjct: 26  FRMIGEGDRILLGVSGGKDSLSLLQILAHL-RTYAPVRFELAVLTVD----PEVPGYDPQ 80

Query: 72  YVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            + D   RL +         +   K         A     +  ++    +     ++   
Sbjct: 81  RLKDYYDRLGLTWHYEQQPLMEQAKTHMDGDSFCAYCSRMKRGIMYRLCREHGYNVLALG 140

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DD  E++ M        +    +        D ++ I RP + CR      F  +  
Sbjct: 141 QHLDDLAESLLMSLFHGGQLR----TMKAHYRNQDGDVRIIRPLVYCRERQTADFARRAG 196

Query: 186 ISWCEDPSNT 195
           +    D    
Sbjct: 197 LPVIPDSCPA 206


>gi|291549805|emb|CBL26067.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus torques L2-14]
          Length = 388

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 22/228 (9%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM +      +     F   +   + +D       +  +   
Sbjct: 136 ELVKPGDRIAVCISGGKDSMLMAKLFQELKRHNKF-DFEVKFLVMDPGYSPANRQVIE-- 192

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +   RL I   +            +          R   +  HA+ +    I   H +D
Sbjct: 193 -ENARRLEIPIEIFESDIFESVYNIEKSPCYLCARMRRGYLYSHAQKMGCNKIALGHHYD 251

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        + M       +  ++  + + RP    R +DI+++    ++ + 
Sbjct: 252 DVIETILMGMLYSAQVQTM--MPKLHSTNFE-GMELIRPLYMVREDDIKAWRDYNDLHFI 308

Query: 190 EDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +             N ++R +R+ ++  +  +     Y++   F+ + 
Sbjct: 309 QCACKFTDTCTTCNNEENRSKRMEIKELIATLKKVNPYVEGNIFKSVE 356


>gi|126178433|ref|YP_001046398.1| PP-loop domain-containing protein [Methanoculleus marisnigri JR1]
 gi|125861227|gb|ABN56416.1| PP-loop domain protein [Methanoculleus marisnigri JR1]
          Length = 343

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 69/182 (37%), Gaps = 20/182 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     + VA+SGG DS  +L  LH +L +R    ++  AI+VD  +      +    
Sbjct: 42  RWIESGDTVAVALSGGKDSSAVLFFLHRLLGERR--DVRLMAITVDEGISGY--RDPNQA 97

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLI 122
             +   + +     ++ +    T     AR+            R AL++  A+  + T  
Sbjct: 98  RKIAESMGVPWVTATFADEYRITLDEIVARKGTGLSCSYCGVLRRALMNRIAREHDVTKF 157

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                 DD+ ++V M + R  AE+        + ++        +PF+     ++  +  
Sbjct: 158 AYGFNLDDEAQSVLMNALRGDAERLTRPMREAEGMVPR-----IKPFMYIPEREVALYAF 212

Query: 183 QR 184
             
Sbjct: 213 LH 214


>gi|254670214|emb|CBA05375.1| cell cycle protein [Neisseria meningitidis alpha153]
          Length = 331

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 63/187 (33%), Gaps = 6/187 (3%)

Query: 141 RDYAEKGMGLSGMCD-TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           R  A     L  +C     +     I RP L   R+DI  +  +  +   ED SN+D  +
Sbjct: 28  RSRAAAVCALWRLCPAVRPFGEKGIIWRPLLPFSRQDIWDYAQKHGLPNIEDESNSDTAY 87

Query: 200 ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP---KYLTVHMRSIIAISQDI 256
            R R R  +       +    +   +    +   +A+L     +       +    +   
Sbjct: 88  LRNRFRHRILPELSAQIPHFGRHLLNNVRALQEDLALLDEVVVQDCRWVCGAGYFDTARW 147

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFL 316
           L        ++LR    +    I +P   ++  +   L   K G  ++    +   A  L
Sbjct: 148 LTFSPRRKTHILRHF--LKENGIPVPNQNALADIARVLTEAKTGRWNVQGFELHHYAGRL 205

Query: 317 WITRAVR 323
           ++ R  +
Sbjct: 206 FVFRPEK 212


>gi|197285222|ref|YP_002151094.1| C32 tRNA thiolase [Proteus mirabilis HI4320]
 gi|227355648|ref|ZP_03840042.1| PP-loop superfamily ATPase MesJ [Proteus mirabilis ATCC 29906]
 gi|194682709|emb|CAR42884.1| conserved hypothetical protein [Proteus mirabilis HI4320]
 gi|227164255|gb|EEI49148.1| PP-loop superfamily ATPase MesJ [Proteus mirabilis ATCC 29906]
          Length = 306

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 85/254 (33%), Gaps = 22/254 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L ++       +    A+++D   +        ++  +  
Sbjct: 34  GDKIMVCLSGGKDSYTLLSILMNLQKSAPI-QFSLIAVNLD-QKQPG---FPEHILPEYL 88

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + +V                   +     R  ++   A  + AT I   H  DD
Sbjct: 89  EQLGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATEVGATKIALGHHRDD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++        KGM    M D    D    + RP    R +DI  F   +N     
Sbjct: 149 ILETLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYAREKDIERFAQAKNFPII- 203

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  +RD D          F+  +  V + +            +
Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRATQNIVPSHLCDTQLFDFANIKQ 262

Query: 248 SIIAISQDILNIDS 261
               I+   L  D 
Sbjct: 263 GDEIINGGDLAFDK 276


>gi|307594196|ref|YP_003900513.1| PP-loop domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307549397|gb|ADN49462.1| PP-loop domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 338

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 72/210 (34%), Gaps = 25/210 (11%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK-IKFSAI 56
           +F S  ++V   +R    +     I +A+SGG DS+ L+  L          + ++  A 
Sbjct: 30  LFRSIEDTVLRTIRKYRLISDDDRIGIAISGGKDSLTLMYLLGKFRRQGKIPRNVELIAF 89

Query: 57  SVDHCLRETAK----DEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTG 97
           S++      +       V YV  +     I + V ++K                      
Sbjct: 90  SINEG-HPYSCFYRMARVDYVQKLSEEFNIPYRVYTFKELFGVTATDIAHGLWSKGINVH 148

Query: 98  LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
           +       R   ++   + +  T I T H  DD+ +TV +    +  ++     G    I
Sbjct: 149 MCTIDGVLRRRAMNIIGRQLGLTKIATGHNLDDESQTVLLNVLSNDLDRFAWF-GPRPEI 207

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             +  +   +P    R E+I  +     I 
Sbjct: 208 DREGFIPRIKPLRFVREEEIALYAYYHGIP 237


>gi|227888869|ref|ZP_04006674.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
 gi|227850562|gb|EEJ60648.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
          Length = 118

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +     L+A SGG DS+ LL  L + L + S    +     +DHCLR+ +  E + +  +
Sbjct: 15  IKNKKFLLAASGGPDSVALLKMLVNFLPNPSE---QLIVAHLDHCLRDDSFLESQLLQRL 71

Query: 77  CSRLRIAHSVVSWKNS-KPQTGLMAAAREARYALISEHAKTINATLI 122
            S L++      W     PQ G+ A ARE RYA ++E  +      +
Sbjct: 72  TSALKVKLVEKKWPVELHPQAGVEAKAREYRYAFLAEVGRKYKTDYL 118


>gi|209875951|ref|XP_002139418.1| PP-loop family protein [Cryptosporidium muris RN66]
 gi|209555024|gb|EEA05069.1| PP-loop family protein [Cryptosporidium muris RN66]
          Length = 348

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 36/243 (14%)

Query: 2   FLSPIES-VRFFVRS--LVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           FLS  E  V  ++ S  +  P  ++ + +SGG DS  LL  ++ + + R    +    ++
Sbjct: 29  FLSAFEEEVHEYITSYKMFSPGEVVAIGISGGKDSSVLLNVMYEL-NKRKEYGLDLRLVA 87

Query: 58  VDHCL---RETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAR 103
           +D  +   R+ A   V +  D      +  +++ +++              ++       
Sbjct: 88  IDEGIKGYRDDALKVVNFQKDY---YDLPLTILQFQDLFGTTMDDIRLKAGKSNSCTFCG 144

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK---------GMGLSGMC 154
             R   +        A  + T H  DD  ETV +   R    +            +    
Sbjct: 145 VFRRRSLDVGGNLSGADKLCTGHNADDAAETVLLNILRGDLNRLQRCTNPITSTEIKQSQ 204

Query: 155 DTILYDLNLWI-----SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
           D  +      +      +P + C  ++I  +    N+ +            R   R F+R
Sbjct: 205 DNEVVMGLGTLRSIPRVKPLMYCFEKEIVLYAYYSNLRYFSTECKYSVDAYRGFAREFIR 264

Query: 210 DID 212
            I+
Sbjct: 265 QIE 267


>gi|239907020|ref|YP_002953761.1| hypothetical protein DMR_23840 [Desulfovibrio magneticus RS-1]
 gi|239796886|dbj|BAH75875.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 266

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 61/188 (32%), Gaps = 19/188 (10%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-- 72
            L   A + +AVSGG DS+ +L  +  +        ++   + ++            +  
Sbjct: 33  QLAPRARVGLAVSGGVDSLVMLAVMA-IRRRIVPFPVELILLHLNPGFDPE-----NHSP 86

Query: 73  VSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++++C+ L +   +        ++     +          R   + +     N + +   
Sbjct: 87  LAELCADLGVPAHIEVTDYGPRAFSEENKKNSPCFYCAWLRRKRLFDLCARYNLSHLAFG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD   T ++   ++    G+          +   L + RP L   +  I        
Sbjct: 147 HNADDLAATFFLNLFQNGRVDGLS----GRESFFSGRLTVIRPLLLVDKPTIIRAAKAWE 202

Query: 186 ISWCEDPS 193
           +    +P 
Sbjct: 203 LPVFSNPC 210


>gi|164661037|ref|XP_001731641.1| hypothetical protein MGL_0909 [Malassezia globosa CBS 7966]
 gi|226711427|sp|A8PVM6|CTU1_MALGO RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|159105542|gb|EDP44427.1| hypothetical protein MGL_0909 [Malassezia globosa CBS 7966]
          Length = 373

 Score = 96.1 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 34/228 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   + ++ ++R    +    +S+D  +     D +  V    
Sbjct: 49  RGDRVAIGASGGKDSTVLAYVMKTL-NERYDYGLNLFLLSIDEGITGYRDDSLETVKRNQ 107

Query: 78  SRLRIAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  I   V+ +K            S  +          R   +   A ++    I+T H
Sbjct: 108 EQYGIPLKVLGYKELYGWSMDDIVASIGRKNNCTFCGVFRRQALDRGAASLGVDHIVTGH 167

Query: 127 TFDDQLETVYMRSQRDYAEK----------------------GMGLSGMCDTILYDLNLW 164
             DD  ETV M   R    +                           G   +      + 
Sbjct: 168 NADDMAETVLMNVLRGDIARLERCTDIITKGPDGVDGDEDDDETEGCGAGRSGFGGSGIR 227

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            S+PF     ++I  +   + + +            R   R F++D++
Sbjct: 228 RSKPFKYAYEKEIVMYAYFKQLDYFSTECIYSPNAYRGYARAFLKDLE 275


>gi|160894783|ref|ZP_02075558.1| hypothetical protein CLOL250_02334 [Clostridium sp. L2-50]
 gi|156863717|gb|EDO57148.1| hypothetical protein CLOL250_02334 [Clostridium sp. L2-50]
          Length = 385

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 86/245 (35%), Gaps = 21/245 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM +      +     F + +   + +D    ET +  +   
Sbjct: 130 ELVKPGDKIAVCISGGKDSMLMAKCFQELKLHNKF-EFEVKFLVMDPGYSETNRKVIE-- 186

Query: 74  SDVCSRLRIAHSVVSWKNSK----PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +    L I  ++      +     +          R   +   A+ +    I   H +D
Sbjct: 187 -ENAKSLNIPITIFESDIFESVFTVEKSPCYLCARMRRGHLYHFAQELGCNKIALGHHYD 245

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        + M       +  ++  + + RP    R +DI+++     + + 
Sbjct: 246 DVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDDIKAWRDYNGLHFI 302

Query: 190 EDP---------SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +            N ++R +RV ++  ++ +     Y++   F+ +     + V      
Sbjct: 303 QCACKFTDTCTTCNNENRSKRVEIKELIQTLKQVNPYVEGNIFKSVENVNLDTVVAWKQH 362

Query: 241 YLTVH 245
               H
Sbjct: 363 GEKHH 367


>gi|37679865|ref|NP_934474.1| ATPase [Vibrio vulnificus YJ016]
 gi|320156359|ref|YP_004188738.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus
           MO6-24/O]
 gi|81757527|sp|Q7MKU7|TTCA_VIBVY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|37198610|dbj|BAC94445.1| predicted ATPase [Vibrio vulnificus YJ016]
 gi|319931671|gb|ADV86535.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus
           MO6-24/O]
          Length = 310

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 87/258 (33%), Gaps = 24/258 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+            A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKSAPIS-FSLVAVNLD-QKQPG---FPAHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   +     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +         
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMAGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQNIKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFELFDFKSIN 267

Query: 247 RSIIAISQDILNIDSTLL 264
           +    I+   +  D   +
Sbjct: 268 KDSGVINGGDIGFDKEEM 285


>gi|148653547|ref|YP_001280640.1| C32 tRNA thiolase [Psychrobacter sp. PRwf-1]
 gi|205830619|sp|A5WG99|TTCA_PSYWF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|148572631|gb|ABQ94690.1| PP-loop domain protein [Psychrobacter sp. PRwf-1]
          Length = 368

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 85/260 (32%), Gaps = 23/260 (8%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           ++R F  +++    ++ V VSGG DS  LL  L  +   +    I F  ++V+    +  
Sbjct: 77  AIRDF--NMIEDGDVVMVCVSGGKDSYTLLDILLFL---KRIAPINFDVVAVNLDQKQPG 131

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTIN 118
             +EV    +   +  I H ++          +        +A    R   +   AK I 
Sbjct: 132 YPEEVLP--NYLQQQGIPHYILEKDTYSVVKSVVPEGKTYCSACSRLRRGSLYGFAKQIG 189

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L T ++      + K M    + D    D    + RP      +DI 
Sbjct: 190 ATKIALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNVLIRPLAYVEEKDII 245

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +   +       P N     +    R  + D+         ++   +   + N     +
Sbjct: 246 KYARYKEFPII--PCNLCGS-QENLQRAMINDMLRQWDDAHPQRLASIFKAMQNVAPSQL 302

Query: 239 PKYLTVHMRSIIAISQDILN 258
                    S+     D   
Sbjct: 303 ADRELFDFESLTLQRDDSKR 322


>gi|257053471|ref|YP_003131304.1| PP-loop domain protein [Halorhabdus utahensis DSM 12940]
 gi|256692234|gb|ACV12571.1| PP-loop domain protein [Halorhabdus utahensis DSM 12940]
          Length = 321

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 19/186 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   L+ +SGG DS+ L   L    ++    +I+  A+S+   +     + +     +  
Sbjct: 55  PVTWLIGLSGGKDSVVLTQLLAETFAE--DPRIELVALSIHEGIEGYRDESLDAAEALTD 112

Query: 79  RLRIAHSVVS------------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            L + H  VS             ++        A     R  L+S +A   +A L++T H
Sbjct: 113 DLDLRHETVSYAEAFGVRMDDVVEDDPENMAACAYCGVFRRDLLSRYADEYDADLLLTGH 172

Query: 127 TFDDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
             DD+ ET  M                 L  M +  L D ++  ++P      +++  + 
Sbjct: 173 NLDDEAETALMNFFEGDVDQMAKHFDASLGPMPERSLTDKHVPRAKPLRDVPEKEVALYA 232

Query: 182 LQRNIS 187
              ++ 
Sbjct: 233 RLADLP 238


>gi|270291818|ref|ZP_06198033.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M143]
 gi|270279346|gb|EFA25188.1| tRNA(Ile)-lysidine synthetase [Streptococcus sp. M143]
          Length = 310

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 77/194 (39%), Gaps = 15/194 (7%)

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +TAH  DDQ+ET+ MR  R    +   L+G+ ++ + D  + I RP L   ++D      
Sbjct: 2   VTAHHADDQVETILMRLIRGSRLR--HLTGIKESQVVD-GIEIIRPLLYFHKKDFPP--- 55

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
              I   ED +N ++ + R R+R       L  L  +  + +   + +   ++       
Sbjct: 56  ---IVHFEDQTNQENAYFRNRIRNR----YLPELEKENPRLKFALLDLGREISDYQATIT 108

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLR-VSAAICGGQISLPGYRSMERVMLFLKSGKRGC 301
            +  +  +    ++ +        LL+          ++   +  + +++   KS  R  
Sbjct: 109 ELSKQIDVEDLNELFSYSQQTQGVLLQNYLNQFPELNLTKAQFAEVRQILAT-KSQYRHS 167

Query: 302 VSIGRVVIDRRANF 315
           +  G  +I    NF
Sbjct: 168 LKNGYELIKEYQNF 181


>gi|291545412|emb|CBL18520.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus sp. SR1/5]
          Length = 382

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 12/180 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM +      +     F   +   + +D    E  +  + + 
Sbjct: 147 ELVKPGDKIAVCISGGKDSMLMAKLFQELKRHNKFP-FELVFLVMDPGYNEANRAVIEHN 205

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + +   L I  +V   +        +          R   +   AK +    I   H +D
Sbjct: 206 ARL---LGIPITVFETEIFDAVYNIEKSPCYLCARMRRGYLYSKAKELGCNKIALGHHYD 262

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        + M       +  ++  + + RP    R  DI+ +    ++ + 
Sbjct: 263 DVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMQLIRPMYLIREADIKHWRDYNDLHFI 319


>gi|119719832|ref|YP_920327.1| PP-loop domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119524952|gb|ABL78324.1| PP-loop domain protein [Thermofilum pendens Hrk 5]
          Length = 328

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 95/239 (39%), Gaps = 23/239 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
              +E+VRF+ + +     + VAVSGG DS+  L        +     ++   ++VD  +
Sbjct: 33  RRFLEAVRFY-KLVERGERVAVAVSGGKDSLTTLYLFSRFAGELG---VEVFGVAVDEGI 88

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AARE-------------ARY 107
               + ++  +  +  RL +   V S+K     T   A  A RE              R 
Sbjct: 89  AGYREYKLEALRSLAGRLGVEIIVGSFKEYFGFTLDEAVKALREKGFKVKPCSVCGVLRR 148

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            +++  A+   A  + T H  DD+++   M + +++ E  +    + +       +   +
Sbjct: 149 YVMNHAAREAGADKLATGHNLDDEVQVFVMNALKNHVEGILREGIVSERAEEGDLVPRIK 208

Query: 168 PFLRCRREDIRSFLLQRNI--SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
           P      +++ ++ L RNI   + E P        R  +R +V +++  +   K +   
Sbjct: 209 PLYFIPEKEVLAYTLIRNIYTPFVECP--YIVYALRHPIRHWVNEVEDSSPGFKYRVLA 265


>gi|67474924|ref|XP_653193.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56470124|gb|EAL47807.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 250

 Score = 95.7 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 26/185 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLR-ETAKDEV 70
                I++  SGG DS  L+  L ++     F  +    + V      + L  E +    
Sbjct: 32  APHDKIIIGFSGGKDSFLLVHVLSTLGKTSHFP-LDILVVHVTNEQVGYQLNIEDS---- 86

Query: 71  RYVSDVCSRLRIAHSVVS--------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +C  L I    +          +++   T       + R   + E+AK    T I
Sbjct: 87  ---KALCESLGIPFITLESEPVSRFDIEDADKNTTFCLNCGKNRRRALLEYAKEHGYTSI 143

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
              H  DD  ET+ M         G+      +       +   RP +      I+ +  
Sbjct: 144 ALGHHMDDVAETLLMNQMFCGCIAGIPAQFTTEKY----GVKFIRPLIEVPVVFIQEWTK 199

Query: 183 QRNIS 187
              + 
Sbjct: 200 YIELP 204


>gi|218191619|gb|EEC74046.1| hypothetical protein OsI_09038 [Oryza sativa Indica Group]
          Length = 373

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 25/220 (11%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +  SGG DS  L   L  + + R    +    +SVD  +     D +  V
Sbjct: 60  NLFKPGDRVAIGASGGKDSTVLAYVLSEL-NRRHKYCLDLFLLSVDEGITGYRDDSLETV 118

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS+K+           +             R   +   A  +    I
Sbjct: 119 KRNEIQYGLPLKIVSYKDFYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKI 178

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI----- 177
           +T H  DD  ETV +   R    +    + +  T   D  +   +PF     ++I     
Sbjct: 179 VTGHNADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVIYPY 236

Query: 178 -----RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                  +   + + +            R   R F++D++
Sbjct: 237 YAISHIMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLE 276


>gi|329904336|ref|ZP_08273768.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548028|gb|EGF32764.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 315

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 19/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++  +R+    +  A+++D   +        ++     
Sbjct: 53  GDKVMVCLSGGKDSYALLDILMTL-RERAPINFELIAVNLD-QKQPN---FPEHILPAYL 107

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + L +A  +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 108 TDLGVAFHIENQDTYSIVKRVIAEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDD 167

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189
            LET ++        K    S        D    + RP    +  D   +   +N     
Sbjct: 168 ILETFFLNMFFGGKLK----SMPPKLQSDDGKHIVIRPLAYVKEADTERYAEVKNFPIIP 223

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRS 248
            D   + +  +R +++  +RD D          F  L  V  ++ +   +  +  + +  
Sbjct: 224 CDLCGSQENLQRKQLKNMLRDWDKKNPGRTDNIFAALSTVAPSHLMDRKLFDFAGLAVTG 283

Query: 249 IIAISQDILNIDSTLL 264
              +  DI   D    
Sbjct: 284 APVVDGDIAFDDEPCA 299


>gi|206559013|ref|YP_002229773.1| C32 tRNA thiolase [Burkholderia cenocepacia J2315]
 gi|198035050|emb|CAR50922.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 321

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 32  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 90

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +   ++ +   +       +  +         +     R  +
Sbjct: 91  LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 146

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 147 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 202

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +RD D          F  L
Sbjct: 203 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 260

Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256
              V ++ +   +  + ++          DI
Sbjct: 261 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 291


>gi|312876098|ref|ZP_07736086.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797084|gb|EFR13425.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 114

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 3  LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          +  +E V+  +     L     +L+  SGG DSM LL  +  +  + S   +  +   ++
Sbjct: 1  MDFLEKVKSNIEKYGMLKKGFKVLIGCSGGVDSMVLLDCICRLKDEYS---LDITVAHLN 57

Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
          H LR  A D+ ++V ++C R  I         +
Sbjct: 58 HMLRPEADDDEKFVIEICKRYNIKCITRKVDVA 90


>gi|302141685|emb|CBI18888.3| unnamed protein product [Vitis vinifera]
          Length = 370

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 71/226 (31%), Gaps = 33/226 (14%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L  P   I +  SGG DS  L   L  + + R    +    +SVD  +     D +  V
Sbjct: 56  QLFKPGERIAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSVDEGITGYRDDSLETV 114

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   VVS+K+                         R   +   A  +    +
Sbjct: 115 KRNEIQYGLPLKVVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQALDRGAAMLKVDKL 174

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIR-- 178
            T H  DD  ETV +   R    +       C +I+   +  I R  PF     ++I   
Sbjct: 175 ATGHNADDIAETVLLNILRGDIARLS----RCTSIITGEDGPIPRCKPFKYTYEKEIVIY 230

Query: 179 ------------SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                       ++   + + +            R   R F++D++
Sbjct: 231 PYSFLQNLNRIYTYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLE 276


>gi|283850711|ref|ZP_06367998.1| PP-loop domain protein [Desulfovibrio sp. FW1012B]
 gi|283573954|gb|EFC21927.1| PP-loop domain protein [Desulfovibrio sp. FW1012B]
          Length = 255

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 64/188 (34%), Gaps = 19/188 (10%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-- 72
            L   A + +AVSGG DS+ +L  +  +        ++   + ++        D   +  
Sbjct: 33  QLAPRARVGLAVSGGVDSLVMLAVMA-IRRRIVPFPVELMLLHLNPGF-----DAANHEP 86

Query: 73  VSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           ++ +C+ L +   +        ++ +   +          R   + +       T +   
Sbjct: 87  LAGLCADLGLPAHIEVTDFGPRAFSDENKKKSACFYCAWLRRKRLFDLCGQYGLTHLAFG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD   T ++   ++    G+     C    ++  L + RP L   ++ I        
Sbjct: 147 HNADDLSATFFLNIFQNGRVDGLS----CRESFFEGRLTVIRPLLLVDKKTIIRAAKAWE 202

Query: 186 ISWCEDPS 193
           +    +P 
Sbjct: 203 LPVFSNPC 210


>gi|183598903|ref|ZP_02960396.1| hypothetical protein PROSTU_02339 [Providencia stuartii ATCC 25827]
 gi|188021111|gb|EDU59151.1| hypothetical protein PROSTU_02339 [Providencia stuartii ATCC 25827]
          Length = 304

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 86/257 (33%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L S+            A+++D   +        ++  +  
Sbjct: 34  GDRIMVCLSGGKDSYTLLSILQSLQKSAPIS-FSLVAVNLD-QKQPG---FPEHILPEYL 88

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L I + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 89  ENLGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  +   +      
Sbjct: 149 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERYAQAKEFPII- 203

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  +RD D          F+  +  V + +             
Sbjct: 204 -PCNLCGSQPNLQRQVIKDLLRDWDKRYPGRIETMFRATQNVVPSHLCDTELFDFKNVAH 262

Query: 248 SIIAISQDILNIDSTLL 264
               I+   L  D   +
Sbjct: 263 GDTVINGGDLAFDREEI 279


>gi|294934128|ref|XP_002780993.1| hypothetical protein Pmar_PMAR018043 [Perkinsus marinus ATCC 50983]
 gi|239891164|gb|EER12788.1| hypothetical protein Pmar_PMAR018043 [Perkinsus marinus ATCC 50983]
          Length = 527

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 74/193 (38%), Gaps = 26/193 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +++++SGG DSM  L  L  +     F   K  A  + H  R+ A  E+++V+ V +
Sbjct: 63  PKVLVLSLSGGVDSMTHLYLLSKLQQPLGF---KLVACHIRHSNRDDAIQELQWVTYVTA 119

Query: 79  RLRIAHSVVSWKNSKPQTGL---------MAAAREARYALISEHAKTINAT--------- 120
           RL +       K  +P   L             R+ R+++ ++  K   A          
Sbjct: 120 RLGVPLYHHHVKLRRPHGSLKTGISRMDYEKQTRDIRFSMYAKAHKLAWAAAGLPEEERT 179

Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRP-FLRCRRE 175
             +++  H  DD  E       +       G+    +    D    +   RP  L  R+E
Sbjct: 180 QPVVVVGHHMDDVDENRLAELGKGNLLNINGMVINAEGDGDDEIGGVCQVRPLLLSTRKE 239

Query: 176 DIRSFLLQRNISW 188
           ++ +   + NI +
Sbjct: 240 ELIACAARHNIPY 252


>gi|186477640|ref|YP_001859110.1| C32 tRNA thiolase [Burkholderia phymatum STM815]
 gi|205830570|sp|B2JIL8|TTCA_BURP8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|184194099|gb|ACC72064.1| PP-loop domain protein [Burkholderia phymatum STM815]
          Length = 336

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 86/262 (32%), Gaps = 29/262 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 67  GDKVMVCLSGGKDSYAMLDVLMRL-RERAPIHFDIVAVNLD-QKQPG---FPEHVLPEYL 121

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           S+L I + +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 122 SKLDIPYHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 181

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 182 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELRQFPII- 236

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML-------IPK 240
            P N        +R  ++  +R+ D          F  L   V + +          +  
Sbjct: 237 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNALSNVVPSHLMDHKLFPFASLRA 295

Query: 241 YLTVHMRSIIAISQDILNIDST 262
                    IA  ++  + DS 
Sbjct: 296 TGEADPHGDIAFDEEPCSADSA 317


>gi|167040416|ref|YP_001663401.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300913703|ref|ZP_07131020.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp. X561]
 gi|307723282|ref|YP_003903033.1| ATPase [Thermoanaerobacter sp. X513]
 gi|166854656|gb|ABY93065.1| PP-loop domain protein [Thermoanaerobacter sp. X514]
 gi|300890388|gb|EFK85533.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp. X561]
 gi|307580343|gb|ADN53742.1| ATPase [Thermoanaerobacter sp. X513]
          Length = 297

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 20/212 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +       + L     ++VA+SGG DS+     L  +  +     I    I+ +  
Sbjct: 30  FLRQVSKTIEKYKMLPPKGRVVVAISGGKDSLVTAYVLKKLGYEVLGFFIDLG-ITQN-D 87

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI---- 117
               +++    V + C    I   +V  K    +     A +  R   I    K      
Sbjct: 88  FSPRSREV---VENFCKEHDIPLEIVDLKAGYGKGIPEVAKKHDRICAICGVTKRHLMNE 144

Query: 118 -----NATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
                NA  + T HT DD  + +     R D      G+  +     +       +P   
Sbjct: 145 YTLAVNADALATGHTLDDMAKLLLANLMRWDLHHLAKGIPTLPAEPGFAKK---IKPLAF 201

Query: 172 CRREDIRSFLLQRNISWCE--DPSNTDDRFER 201
              ++I +F    NI   E   P   + ++ R
Sbjct: 202 QSEDEIIAFAKLHNIKPVEAKCPYGREAKYNR 233


>gi|94266223|ref|ZP_01289931.1| PP-loop [delta proteobacterium MLMS-1]
 gi|93453196|gb|EAT03657.1| PP-loop [delta proteobacterium MLMS-1]
          Length = 290

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 28/236 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----------- 62
           + L     +++AVSGG DS+ L   L  +   ++    +  A+ +D              
Sbjct: 51  QMLADGDRVMIAVSGGIDSLVLCRLL-EIWRRKAPIDYELLAVHLDMGFAGYVPPPELGN 109

Query: 63  RE----TAKD--EVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALI 110
           +      A        V      + + + +           ++            R A +
Sbjct: 110 QPPGTINAPLPGTAAAVEAQLQLIGLPYYIEETSCGPEAMAAEGGKNGCYHCASRRRARL 169

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E A+      +   H  +D +ET ++         G   + + +  L+   L + RP  
Sbjct: 170 FELARERGCNKLALGHHREDIIETFFLNLLYG----GNLSTMVPNQHLFAGRLQLIRPLA 225

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  +        +    +P    D  +R ++R+ +  I      L+   F  L
Sbjct: 226 LLEKAMVHQLGELFKVEAVANPCPLTDHSQRHQIRQLLHTITGDDPRLQANIFAAL 281


>gi|302386913|ref|YP_003822735.1| Rhodanese domain protein [Clostridium saccharolyticum WM1]
 gi|302197541|gb|ADL05112.1| Rhodanese domain protein [Clostridium saccharolyticum WM1]
          Length = 396

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 76/229 (33%), Gaps = 34/229 (14%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I V +SGG DSM +      +     F   +   + +D    ET +  +   + +   
Sbjct: 147 DRIAVCISGGKDSMLMAKLFQELRRHNKFP-FELVFLVMDPGYNETNRQVIESNARL--- 202

Query: 80  LRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I  +V   +        +          R   +   A+ +    I   H +DD +ET+
Sbjct: 203 LNIPITVFETQIFDAVYDVEKSPCYLCARMRRGYLYNKARELGCNKIALGHHYDDVIETI 262

Query: 136 YMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
            M         G  +  M   +       + + RP    R +DI+ +     + + +   
Sbjct: 263 LMGMM-----YGAQIQTMMPKLHSTNFEGMELIRPMYLIREDDIKDWRDYNGLHFIQCAC 317

Query: 194 NTDDRF---------------ERVRVRRFVRDIDLHALYLKMKKFQDLR 227
               RF               +RV ++  +R +     Y++   F+ + 
Sbjct: 318 ----RFTDTCTTCRTDGSTGSKRVEIKNLIRQLKETNPYIESNIFKSVE 362


>gi|153852855|ref|ZP_01994292.1| hypothetical protein DORLON_00274 [Dorea longicatena DSM 13814]
 gi|149754497|gb|EDM64428.1| hypothetical protein DORLON_00274 [Dorea longicatena DSM 13814]
          Length = 384

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 15/188 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DSM +      +L        +   + ++    E   +  + + D   
Sbjct: 142 GDKIAVCISGGKDSMLMAKLFQELLK-HGKANFELVFLVMNPGYNE--DNW-KIIQDNAK 197

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L I  +V   +     +             R   +  HAK +    I   H FDD +ET
Sbjct: 198 VLGIPLTVFETQIFDTVADIDKNPCYLCARMRRGYLYSHAKELGCNKIALGHHFDDVIET 257

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + M        + M       +  ++  + + RP    + +DI ++     +++ +    
Sbjct: 258 ILMGMFYGGKVETM--MPKLHSQNFE-GMELIRPMYLIKEDDIIAWRDYNQLNFIQCAC- 313

Query: 195 TDDRFERV 202
              RF   
Sbjct: 314 ---RFTEN 318


>gi|115676810|ref|XP_795634.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115955398|ref|XP_001195059.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1119

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 84/236 (35%), Gaps = 28/236 (11%)

Query: 14   RSLVYPAHILVAVSGGSDSMGLLIAL--HSVLSDRSFGKIKFSAISVD-----HCLRETA 66
            + L     +LV +SGG DS+ LL  L  +   + +        A++VD        R   
Sbjct: 876  KMLRDGDRVLVCLSGGKDSLSLLHCLRQYQFAAKKKGITFDLGAVTVDPQTPSFNPRP-- 933

Query: 67   KDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQ--TGLMAAAREARYALISEHAKTINA 119
                  +    ++L + +      ++    S P     + +     +   +   A+    
Sbjct: 934  ------LIGYLAKLGLPYFYEEQCIIDQAASLPDGCASICSFCSRMKRGRLYACARREGY 987

Query: 120  TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++      DD  E+  M    +   +    +   +  + + +L + RPF+  R +D+R 
Sbjct: 988  NVLAMGQHLDDLTESFLMSVFHNGFLR----TMKANYTVKEGDLRVIRPFVYVREKDLRD 1043

Query: 180  FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F  Q  +       N    FE  + R  V+ +      L  + +  L+  +   +A
Sbjct: 1044 FAEQAKLPVI--SENCPACFEAPKERHRVKQLLASQELLFPRLYPSLQTALRPLMA 1097


>gi|292492922|ref|YP_003528361.1| PP-loop domain protein [Nitrosococcus halophilus Nc4]
 gi|291581517|gb|ADE15974.1| PP-loop domain protein [Nitrosococcus halophilus Nc4]
          Length = 302

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 91/275 (33%), Gaps = 26/275 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS  LL  L ++         +  A+++D   +        ++    
Sbjct: 35  AKDRVMVCLSGGKDSYALLDILLNLQKHAPV-DFELIAVNLD-QKQPG---FPEHILPQY 89

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L + + +V                   +     R  ++   A+ + AT I   H  D
Sbjct: 90  LESLGVPYQIVERDTYSVVKRVIPEGKTTCSLCSRLRRGILYGTAEELGATKIALGHHRD 149

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISW 188
           D LET+++            L GM   +L D    I  RP   CR +D+  +   +    
Sbjct: 150 DILETLFLNMFHGGT-----LKGMPPKLLSDDGKHIVIRPLAYCREKDLEVYAKIKAFPI 204

Query: 189 CEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTV 244
              P N        +R  ++  ++  D          F+ L+ VK ++     +  +  +
Sbjct: 205 I--PCNLCGSQANLQRQAIKEMMKTWDRQFPGRLETMFRALQNVKPSHLADSTLYDFKGL 262

Query: 245 HMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQI 279
             +      +     D  +       S +   G+ 
Sbjct: 263 RKQGT-PFPEGDKAFDEEIFLESQEKSLSFNRGRA 296


>gi|239789230|dbj|BAH71252.1| ACYPI006714 [Acyrthosiphon pisum]
          Length = 333

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 74/202 (36%), Gaps = 14/202 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  L   L ++ ++R   ++K   +S+D  +     D ++ V +     +
Sbjct: 53  VAIAASGGKDSTVLAQVLKTL-NERYNYELKLVLLSIDEGITGYRDDSLKTVLENKDEYQ 111

Query: 82  IAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   ++S++               +          R   +   A  +N   I T H  DD
Sbjct: 112 MPLKILSYQQLYGWSMDKIVAEVGRKNNCTFCGVFRRQALDRGAMLLNVDCIATGHNADD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV M   R    +      +    + +  +   +P      ++I  +   + +++  
Sbjct: 172 IAETVLMNILRGDVARLQRCVNI--ITITEGTIPRCKPLKYTYEKEIVMYAYFKKLNYFS 229

Query: 191 DPSNTDDRFERVRVRRFVRDID 212
                     R   R F++D++
Sbjct: 230 TECIFAPNAYRGYARTFLKDLE 251


>gi|193645837|ref|XP_001944809.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like
           [Acyrthosiphon pisum]
          Length = 333

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 74/202 (36%), Gaps = 14/202 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  L   L ++ ++R   ++K   +S+D  +     D ++ V +     +
Sbjct: 53  VAIAASGGKDSTVLAQVLKTL-NERYNYELKLVLLSIDEGITGYRDDSLKTVLENKDEYQ 111

Query: 82  IAHSVVSWK-----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   ++S++               +          R   +   A  +N   I T H  DD
Sbjct: 112 MPLKILSYQQLYGWSMDKIVAEVGRKNNCTFCGVFRRQALDRGAMLLNVDCIATGHNADD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV M   R    +      +    + +  +   +P      ++I  +   + +++  
Sbjct: 172 IAETVLMNILRGDVARLQRCVNI--ITITEGTIPRCKPLKYTYEKEIVMYAYFKKLNYFS 229

Query: 191 DPSNTDDRFERVRVRRFVRDID 212
                     R   R F++D++
Sbjct: 230 TECIFAPNAYRGYARTFLKDLE 251


>gi|3128173|gb|AAC16077.1| hypothetical protein [Arabidopsis thaliana]
          Length = 358

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 70/225 (31%), Gaps = 17/225 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I  V    R       + +  SGG DS  L   L  + + R    +    +S+D  
Sbjct: 42  FEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSIDEG 100

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V     +  +   +VS+K+                         R   +
Sbjct: 101 ITGYRDDSLETVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 160

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              A  +    ++T H  DD  ETV +   R    +         T   D  +   +PF 
Sbjct: 161 DRGAALLKVEKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 218

Query: 171 RCRREDIRSFLLQRN---ISWCEDPSNTDDRFERVRVRRFVRDID 212
               ++I  +    N   + +            R   R F++D++
Sbjct: 219 YTYEKEIVIYPSLHNAFKLDYFSTECIYSPNAYRGFAREFIKDLE 263


>gi|325282320|ref|YP_004254861.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           proteolyticus MRP]
 gi|324314129|gb|ADY25244.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           proteolyticus MRP]
          Length = 292

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 19/190 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     I+V +SGG DS  LL  L  +   R+  + +  A+++D   +     +V   
Sbjct: 29  RMIEEGDRIMVCLSGGKDSYTLLDVLLHLQK-RAPVRFEVVAVNLDQG-QPGFPKDVLP- 85

Query: 74  SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
               S L + H +++                  +     R  ++  HA+ + AT I   H
Sbjct: 86  -RYLSELGVPHDILTEDTYSVVKEKIPEGKTTCSLCSRLRRGILYAHARRLGATKIALGH 144

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRN 185
             DD LET++M         G  L  M   +  D     + RP        I ++   R 
Sbjct: 145 HRDDILETLFMNMF-----FGARLKAMPPKLQSDDGTNVVIRPLAYVPESQIIAYAGARG 199

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 200 FPII--PCNL 207


>gi|223984482|ref|ZP_03634615.1| hypothetical protein HOLDEFILI_01909 [Holdemania filiformis DSM
           12042]
 gi|223963553|gb|EEF67932.1| hypothetical protein HOLDEFILI_01909 [Holdemania filiformis DSM
           12042]
          Length = 263

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 85/234 (36%), Gaps = 19/234 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALH---SVLSDRSFGKIKFSAISVDHCLRETAK--DEVRYV 73
              I V VSGG DSM LL  LH            + +   I +      +    D   + 
Sbjct: 24  HDRIAVGVSGGKDSMLLLYCLHLYQQFCQRIQSKQFEVVGIHIQMGF-PSMDFTDAAVFF 82

Query: 74  SDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                RL +     + ++  + +   +   +     +   ++  AK    T +  AH  D
Sbjct: 83  KQHGIRLELVPSRIYDILKIQANDDGSLKCSLCSTLKKGAVNRAAKDFGCTKVAFAHHGD 142

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M +       G   +      L +  +   RPF+  R   IR+ +   ++   
Sbjct: 143 DAIETLLMNAIYG----GRLATFAPKMYLSNAEMPFIRPFIYARENQIRAAVESCHVPVV 198

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           +  +   D + R   R+ ++++ L  LY +    +D  + + +    L   +  
Sbjct: 199 K-STCPMDGYTR---RQDMKEM-LERLYAEYPMARDNFLLMLHNEKQLSLWHEE 247


>gi|27365903|ref|NP_761431.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio vulnificus
           CMCP6]
 gi|81448038|sp|Q8D9J0|TTCA_VIBVU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|27362052|gb|AAO10958.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio vulnificus
           CMCP6]
          Length = 310

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 87/258 (33%), Gaps = 24/258 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+            A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILISLQKSAPIS-FSLVAVNLD-QKQPG---FPAHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   +     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +         
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMAGYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +++ + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQNIKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADFELFDFKSIN 267

Query: 247 RSIIAISQDILNIDSTLL 264
           +    I+   +  D   +
Sbjct: 268 KDSGVINGGDIGFDKEEM 285


>gi|78067798|ref|YP_370567.1| PP-loop superfamily ATPase [Burkholderia sp. 383]
 gi|123567481|sp|Q39C93|TTCA_BURS3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|77968543|gb|ABB09923.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia sp. 383]
          Length = 331

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 90/271 (33%), Gaps = 26/271 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 42  LFKRIVRQVGQAIGDFNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +   ++ +   +       +  +         +     R  +
Sbjct: 101 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 157 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 212

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +R+ D          F  L
Sbjct: 213 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVENMFNAL 270

Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256
              V ++ +   +  + ++    +     DI
Sbjct: 271 AKVVPSHLMDTTLYPFQSLRASGVADPQGDI 301


>gi|300114179|ref|YP_003760754.1| PP-loop domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299540116|gb|ADJ28433.1| PP-loop domain protein [Nitrosococcus watsonii C-113]
          Length = 294

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L S+       K    A+++D   +        +V     
Sbjct: 38  GDRLMVCLSGGKDSYALLDILLSLQQHAPI-KFDLIAVNLD-QKQPG---FPEHVLPRYL 92

Query: 78  SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V         +         +     R  ++   A+ + AT I   H  DD
Sbjct: 93  ESLGVPYRIVEQDTYSVVKRVIPEGKTTCSLCSRLRRGILYGTAEALGATKIALGHHRDD 152

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET ++        KGM    + D    D    + RP   CR +D+ S+   +N     
Sbjct: 153 ILETFFLNMFHGGTLKGMPPKLLSD----DGKHMVIRPLAYCREKDLASYAQLKNFPII- 207

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  ++  D          F+ L+    + +A           R
Sbjct: 208 -PCNLCGSQANLQRQVIKAMMKAWDKQFPGRLETMFRALQNVKPSHLADSTLYNFQGLQR 266

Query: 248 SIIAISQDILNIDSTLL 264
                 +     D  +L
Sbjct: 267 QETPFPEGDKAFDEEIL 283


>gi|330805982|ref|XP_003290954.1| hypothetical protein DICPUDRAFT_38317 [Dictyostelium purpureum]
 gi|325078876|gb|EGC32504.1| hypothetical protein DICPUDRAFT_38317 [Dictyostelium purpureum]
          Length = 372

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 14/206 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L ++L+ +    +    +S+D  +     D +  V    
Sbjct: 64  RGDRVAIGASGGKDSTVLAEVL-TLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQ 122

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +I   ++S+K                 G        R   +   A  + A  I+T H
Sbjct: 123 EQYQIPLKILSYKELYNWTMDEIVKEIGLKGNCTFCGVFRRQALDRGAVILKANKIVTGH 182

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  ETV M   R    +      +      +  L  S+PF    +++I  +   + +
Sbjct: 183 NADDIAETVLMNLLRGDIPRLQRCVYIITGS--EGALPRSKPFKYTYQKEIVMYAYFKKL 240

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDID 212
            +            R   R F++D++
Sbjct: 241 DYFSTECIYAPNAYRGHARDFLKDLE 266


>gi|33594173|ref|NP_881817.1| hypothetical protein BP3273 [Bordetella pertussis Tohama I]
 gi|81424444|sp|Q7VU56|TTCA_BORPE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|33564248|emb|CAE43539.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332383588|gb|AEE68435.1| hypothetical protein BPTD_3232 [Bordetella pertussis CS]
          Length = 320

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 20/223 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ++V +SGG DS  LL  L S+     F   +  A+++D   +     E+    D  
Sbjct: 45  AGDKVMVCLSGGKDSYALLDILLSLQKRAPFA-FEIIAVNLD-QKQPGFPPEILP--DYL 100

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +   +       +  +       + +     R  ++   A  + AT I   H  DD
Sbjct: 101 RALGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDD 160

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T ++        KGM        +  D    + RP +     D+ ++   +      
Sbjct: 161 ILGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLVYVPESDLIAYAQFKQFPII- 215

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            P N     +  +R  V R +++ D          F  L   V
Sbjct: 216 -PCNLCGSQENLKRKEVGRMIQEWDRKHPGRSWNVFNALSRVV 257


>gi|268592643|ref|ZP_06126864.1| PP-loop family protein [Providencia rettgeri DSM 1131]
 gi|291311783|gb|EFE52236.1| PP-loop family protein [Providencia rettgeri DSM 1131]
          Length = 304

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 88/257 (34%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L S+       +    A+++D   +        ++     
Sbjct: 34  GDRIMVCLSGGKDSYTLLSILQSLQKSAPI-QFSLIAVNLD-QKQPG---FPEHILPAYL 88

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 89  DKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F   ++     
Sbjct: 149 ILQTMFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAQAKDFPII- 203

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  +RD D          F+  +  V + +             
Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRATQNIVPSHLCDTELFDFKNISH 262

Query: 248 SIIAISQDILNIDSTLL 264
               I+   L  D   L
Sbjct: 263 GDEVINGGDLAFDKEEL 279


>gi|331240158|ref|XP_003332730.1| protein VEG136 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309311720|gb|EFP88311.1| protein VEG136 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 392

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 17/211 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +A SGG DS  L   + ++ ++R    +    +S+D  +     D +  V    
Sbjct: 121 KGEKVAIAASGGKDSTVLAHVMTTL-NERYNYGLDLYLLSIDEGITGYRDDSLETVKRNS 179

Query: 78  SRLRIAHSVVSW----KNSKPQTGLMAAARE--------ARYALISEHAKTINATLIMTA 125
           S+  +   V+S+    +       +    R+         R   + + A  +    I+T 
Sbjct: 180 SQYSLPLKVLSYNELYQGWTMDKVVENVGRKSNCTFCGVFRRQALDKGADLLKVDHIVTG 239

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI----SRPFLRCRREDIRSFL 181
           H  DD  ETV M   R    +    + +           I    S+PF     ++I  + 
Sbjct: 240 HNADDVAETVLMNVLRGDIARLERCTEITTGGTAKGTSGIPVKRSKPFKYAYEKEIVMYA 299

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
             + + +            R   R  V+D++
Sbjct: 300 YFKKLDYFSTECTYSPEAYRGHARALVKDLE 330


>gi|150401224|ref|YP_001324990.1| PP-loop domain-containing protein [Methanococcus aeolicus Nankai-3]
 gi|150013927|gb|ABR56378.1| PP-loop domain protein [Methanococcus aeolicus Nankai-3]
          Length = 311

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 20/195 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++     I+V +SGG DS+ +   L  +   +     +   + VD  +    K+ + + 
Sbjct: 48  KNITKDMTIIVGLSGGKDSLVMAHVLKELY--KPIPNTRIIGVMVDEGIEGYRKEGITHA 105

Query: 74  SDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTIN 118
            + C    + + + ++K                              R  ++++ +   N
Sbjct: 106 IEFCEEYNMEYKIATFKETVGYNLDEIVKIAKEKNVNLNPCTFCGVIRRKILNKVSLNEN 165

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  +   H  DD  + V M   +    K   L     + L+   +   +P       ++ 
Sbjct: 166 ADYLAIGHNLDDIAQAVMMNYIKGDINKLAILGKDAGSSLFVKRM---KPLQDIPEHEVL 222

Query: 179 SFLLQRNISWCEDPS 193
            F     +++ +DP 
Sbjct: 223 LFADLIGLNYHKDPC 237


>gi|312137453|ref|YP_004004790.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311225172|gb|ADP78028.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 297

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 85/196 (43%), Gaps = 16/196 (8%)

Query: 4   SPIESVRFFVRS--LVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             ++ +R  V++  L+    ++ VA+SGG DS+  L AL ++ ++ +F   K +AI +D 
Sbjct: 22  ELMKKIRRVVKNYKLIENGDVISVALSGGKDSLLTLYALKNLQNEINF---KLNAIFIDE 78

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA---------AREARYALIS 111
            ++   K+ ++Y+     +L +     S+K                        R  L++
Sbjct: 79  GIKNYRKNALKYLRKHVKKLEVELIKKSFKEEFGFKVDEIKDYFDTPCIPCGIFRRYLLN 138

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A  + A+ + T H  DD++++  M   R    +        D  ++   +   +P   
Sbjct: 139 KTAYEVGASKLATGHNLDDEIQSFLMSLVRGDTFRFYKFGPKLD-RIHPKLIPRIKPLWE 197

Query: 172 CRREDIRSFLLQRNIS 187
              +++  ++++ +I 
Sbjct: 198 VSEKEVIDWVVKNDIE 213


>gi|309799284|ref|ZP_07693532.1| tRNA(Ile)-lysidine synthase [Streptococcus infantis SK1302]
 gi|308117129|gb|EFO54557.1| tRNA(Ile)-lysidine synthase [Streptococcus infantis SK1302]
          Length = 266

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 15/156 (9%)

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
               ++T ++TAH  DDQ+ETV+MR  R    +   LS + +   +D    + RP L   
Sbjct: 1   MGKTSSTALVTAHHADDQVETVFMRMIRG--VRLQHLSAIKERQTFDKG-ELIRPLLSFY 57

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRR-FVRDIDLHALYLKMKKFQDLRVKVNN 232
           ++D         I   ED +N ++ + R RVR  ++  ++   + +K + F +   +V++
Sbjct: 58  KKDFPE------IEHFEDRTNEENYYFRNRVRNIYLPQLEKENIQVK-RAFLEFGKEVSD 110

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
               L     TV++  +       L         LL
Sbjct: 111 YQIALTELSQTVNVEDLT----QFLFFSEATQRILL 142


>gi|332970898|gb|EGK09874.1| PP-loop domain protein [Psychrobacter sp. 1501(2011)]
          Length = 369

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 92/282 (32%), Gaps = 29/282 (10%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++R F  +++    ++ V VSGG DS  LL  L  +   +    I F  ++V+   ++  
Sbjct: 78  AIRDF--NMIEDGDVVMVCVSGGKDSYTLLDILLFL---KRIAPINFDVVAVN-LDQKQP 131

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINA 119
                 + +      I H ++          +        +A    R   +   AK I A
Sbjct: 132 GYPEDILPNYLQEQGIPHYILEKDTYSVVKSVVPEGKTYCSACSRLRRGSLYGFAKQIGA 191

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD L T ++      + K M    + D    D    + RP      +DI  
Sbjct: 192 TKIALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNVLIRPLAYVEEKDIIK 247

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +   +       P N     +    R  + D+        ++++ D   +   ++   + 
Sbjct: 248 YARYKEFPII--PCNLCGS-QENLQRAMINDM--------LREWDDAHPQRLASIFKAMQ 296

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281
                 +        + L +D               GG+  L
Sbjct: 297 NVAPSQLADRELFDFESLKLDRDESERPFEGVNIQVGGEADL 338


>gi|323698074|ref|ZP_08109986.1| PP-loop domain protein [Desulfovibrio sp. ND132]
 gi|323458006|gb|EGB13871.1| PP-loop domain protein [Desulfovibrio desulfuricans ND132]
          Length = 249

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 77/218 (35%), Gaps = 15/218 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            A I +A+SGG DS  L++ + ++        ++  A+ V+      +      V   C+
Sbjct: 31  GARIGLAISGGVDS-FLMLKVMTIRRAIMPFPVELMALHVNPGFDPASH--APLVR-WCA 86

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +A  V        +      +          R   + E  +  N T +   H  DD 
Sbjct: 87  ENGLAAHVELTDFGPRAHTEENRKNSPCFWCAMQRRKRLFELCRDYNLTHLAFGHNADDN 146

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           + T +M   ++    G+      +   +   L + RP +   ++ +     Q  +   E+
Sbjct: 147 VITFFMNVVQNGRADGLS----ANEPFFGGKLKVIRPTMLLDKKTVIKAAAQWELPIWEN 202

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
              ++   +R  +  ++R +      +K   F  +  +
Sbjct: 203 VCPSNGFTKRDEIHEWLRAMWRKDKRIKNNIFNAITRQ 240


>gi|46581643|ref|YP_012451.1| hypothetical protein DVU3241 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601198|ref|YP_965598.1| PP-loop domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46451066|gb|AAS97711.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561427|gb|ABM27171.1| PP-loop domain protein [Desulfovibrio vulgaris DP4]
 gi|311235285|gb|ADP88139.1| PP-loop domain protein [Desulfovibrio vulgaris RCH1]
          Length = 248

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 60/200 (30%), Gaps = 23/200 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD----EVR 71
           L   A I VAVSGG DS  LL  L  +         +  A+ V+              + 
Sbjct: 27  LYPGARIGVAVSGGMDSWVLLQVL-RIRQRIVPFPFEIMALHVNPGFDPENHAPLLPWLE 85

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMT 124
                  R  +A  +    +             A       R   + E       + +  
Sbjct: 86  -------RNGVAAHIEVTDHGPRAHSPENRRNSACFYCAWLRRKRLFELCAQYRLSHLAF 138

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD + T  M   ++    GM +        +   L + RP L   + DI   + Q 
Sbjct: 139 GHNADDLVGTFLMNLYQNGRVDGMSM----KEAFFGGRLQVIRPLLMVEKSDIARAVRQW 194

Query: 185 NISWCEDPSNTDDRFERVRV 204
            +    +P  +     R  V
Sbjct: 195 GLPVWSNPCPSAGATRRSEV 214


>gi|124026994|ref|YP_001012314.1| ATPase [Hyperthermus butylicus DSM 5456]
 gi|123977688|gb|ABM79969.1| predicted ATPase of the PP-loop superfamily [Hyperthermus butylicus
           DSM 5456]
          Length = 341

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 16/201 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E     V +L     ILVA+SGG DS   L AL  +        I+  AI +     
Sbjct: 48  RKVERTLRRVGALRKGVKILVAISGGKDSAVTLAALSDLAKK---YGIEVYAIHLRLGFG 104

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-----------YALISE 112
           E +      V  +C+ L I   VV          +   AR+AR              ++ 
Sbjct: 105 EFSAKVEERVRSLCNMLGIPCIVVDV-AEAVGDPVHILARKARRPACSVCGLVKRYFLNA 163

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + A  +   H  DD +    +++  +   + +   G   T + DL +   RP    
Sbjct: 164 SAIELGADYVALGHNADDII-AYSIKAFLNQDLEALAKFGPVTTSIDDLAVARLRPLYEV 222

Query: 173 RREDIRSFLLQRNISWCEDPS 193
             ++   + + R +    D  
Sbjct: 223 YEKEDVLYAILRGLPVVFDKC 243


>gi|293375997|ref|ZP_06622255.1| PP-loop family protein [Turicibacter sanguinis PC909]
 gi|325842257|ref|ZP_08167649.1| PP-loop family protein [Turicibacter sp. HGF1]
 gi|292645374|gb|EFF63426.1| PP-loop family protein [Turicibacter sanguinis PC909]
 gi|325489663|gb|EGC92023.1| PP-loop family protein [Turicibacter sp. HGF1]
          Length = 244

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 23/223 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRY-- 72
           +     + V VSGG DSM LL ALH       F  +KF  + +   L          +  
Sbjct: 18  IQEGDRVAVGVSGGKDSMALLYALHLYQK---FAPVKFELVGITLKLGFPGMD----FNP 70

Query: 73  VSDVCSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           V + C    I +         ++     +      +   + + A++ +    +    I  
Sbjct: 71  VVEFCKEHGIEYHLVDTQVYEILQLNADENGKIPCSLCSKFKKAILIKKGVELGCNKISM 130

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           AH  DD +ET+ M         G   +      L   ++   RP + C  +DI S   + 
Sbjct: 131 AHHADDAVETLVMN----TMYNGYMATFKPKMYLDRTDVTFIRPLVYCYEDDIISAANRH 186

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +         D   +R  V++ ++ +       K      L 
Sbjct: 187 -VPIVPSTCPMDKHTKREDVKQLLKKLYRDYPMAKQNMLNALS 228


>gi|209517341|ref|ZP_03266184.1| PP-loop domain protein [Burkholderia sp. H160]
 gi|209502224|gb|EEA02237.1| PP-loop domain protein [Burkholderia sp. H160]
          Length = 330

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 30/238 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 62  GDKVMVCLSGGKDSYAMLDILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 116

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L I   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 117 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 176

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 177 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 231

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            P N        +R  ++  +RD +        K+F      + NA++ ++P +L  H
Sbjct: 232 -PCNLCGSQPNLKRAEMKALIRDWE--------KRFPGRIENMFNALSNVVPSHLMDH 280


>gi|332158560|ref|YP_004423839.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2]
 gi|331034023|gb|AEC51835.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2]
          Length = 302

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 31/209 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             IE  R     L     +LVAVSGG DS      L  +             + ++  + 
Sbjct: 36  RTIEKYRL----LKKNEKVLVAVSGGKDSAVTAYVLKKL-------GYNIECLHINLGIG 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHA 114
           E ++    Y    C  +     +V  +            R           RY ++++ A
Sbjct: 85  EYSEKSEMYARKQCELIGAKLHIVRIREILGYGIGEVRTRRPPCSYCGLTKRY-IMNKFA 143

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRC 172
                  I T H  DD+  +  +    +     M        IL     ++   +P    
Sbjct: 144 YDNGFDAIATGHNLDDEA-SFLLN---NLLHWNMEYIARGGPILPRQGKFVKKVKPLYEV 199

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFER 201
              ++ ++ L   + +  +       + R
Sbjct: 200 TEREVVAYALAIGLEYIVEECP----YAR 224


>gi|66811248|ref|XP_639332.1| ATP-binding domain-containing protein 3 [Dictyostelium discoideum
           AX4]
 gi|161788992|sp|Q94480|CTU1_DICDI RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=ATP-binding domain-containing protein 3; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|60467891|gb|EAL65904.1| ATP-binding domain-containing protein 3 [Dictyostelium discoideum
           AX4]
          Length = 360

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 18/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   + ++L+ +    +    +S+D  +     D +  V    
Sbjct: 57  RGDRVAIGASGGKDSTVLAEIM-TLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQ 115

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            + +I   ++S+K                 G        R   +   A  + A  I+T H
Sbjct: 116 EQYQIPLKILSYKELYNWTMDDIVKEIGLKGNCTFCGVFRRQALDRGAVMLKANKIVTGH 175

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184
             DD  ETV M   R    +       C  I+      + R  PF    +++I  +   +
Sbjct: 176 NADDIAETVLMNLLRGDIPR----LQRCVNIITGSEGALPRSKPFKYTYQKEIVMYAYFK 231

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R F++D++
Sbjct: 232 KLDYFSTECIYAPNAYRGHARDFLKDLE 259


>gi|107023912|ref|YP_622239.1| C32 tRNA thiolase [Burkholderia cenocepacia AU 1054]
 gi|123371203|sp|Q1BSY9|TTCA_BURCA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|105894101|gb|ABF77266.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia cenocepacia AU 1054]
          Length = 326

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 37  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 95

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +   ++ +   +       +  +         +     R  +
Sbjct: 96  LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 151

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 152 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 207

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +R+ D          F  L
Sbjct: 208 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNAL 265

Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256
              V ++ +   +  + ++          DI
Sbjct: 266 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 296


>gi|149236786|ref|XP_001524270.1| VEG136 protein [Lodderomyces elongisporus NRRL YB-4239]
 gi|226711426|sp|A5E3Q3|CTU1_LODEL RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName:
           Full=Cytoplasmic tRNA adenylyltransferase 1
 gi|146451805|gb|EDK46061.1| VEG136 protein [Lodderomyces elongisporus NRRL YB-4239]
          Length = 379

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 17/181 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +  SGG DS  L   + ++ ++R    +K   + +D  ++      +  V        
Sbjct: 72  VAIGASGGKDSTVLASVMKTL-NERYNYGLKLVLLCIDEGIKGYRDHSLETVKMNQKEYD 130

Query: 82  IAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   ++S+K+                         R   + + A+ +    I+T H  DD
Sbjct: 131 MPLEILSYKDLYDWTMDEVVSCAGIRSSCTYCGVLRRQALDKGAEKLGINHIVTGHNADD 190

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISW 188
             ETV +   R    +   +      I    N  I R  PF    +++I  +   +N+++
Sbjct: 191 MAETVLLNLLRGDINR---IENSTKIITDSENSVIQRSKPFAYMSQKEIVLYAHYKNLTY 247

Query: 189 C 189
            
Sbjct: 248 F 248


>gi|170734333|ref|YP_001766280.1| C32 tRNA thiolase [Burkholderia cenocepacia MC0-3]
 gi|205830562|sp|B1JZU7|TTCA_BURCC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|169817575|gb|ACA92158.1| PP-loop domain protein [Burkholderia cenocepacia MC0-3]
          Length = 331

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 42  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +   ++ +   +       +  +         +     R  +
Sbjct: 101 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 157 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 212

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +RD D          F  L
Sbjct: 213 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 270

Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256
              V ++ +   +  + ++          DI
Sbjct: 271 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 301


>gi|84489110|ref|YP_447342.1| ATPase [Methanosphaera stadtmanae DSM 3091]
 gi|84372429|gb|ABC56699.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091]
          Length = 283

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 77/206 (37%), Gaps = 11/206 (5%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I++ VSGG DS+  L  L+    +      +  A+ +D  +    +  +    + C
Sbjct: 28  KNEKIMIGVSGGKDSILTLHMLYQYRQESGI-DFELEAVCIDEGICGYREHGIESAKENC 86

Query: 78  SRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             L I  ++ S+K+                       R  L+++ + +     I T H  
Sbjct: 87  KNLDIPLTIASFKDEWNYNLDDIHNLYKSTCMPCGVYRRYLLNKVSDSHKCDKIATGHNM 146

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD++++  M   R+   K      + + I   +   I +P  +   +D+  + +  NI  
Sbjct: 147 DDEIQSFLMTFARNDQNKFPKFGPILNRIDKHMVPRI-KPLWQLPEKDVGIWCIVNNIPI 205

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLH 214
            ++         R  V+ F+  ++ +
Sbjct: 206 HDEECPYSVTSLRSDVKLFLNKLEEN 231


>gi|320585793|gb|EFW98472.1| pp-loop family protein [Grosmannia clavigera kw1407]
          Length = 686

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 22/171 (12%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK------FS 54
           MF+S + S  F   S        +A+SGG DSM L      +     + +I       F+
Sbjct: 1   MFVSFVLSSSFVAHSS------ALAISGGVDSMALAFLCSQLRRVDPWFRIADAPVGGFT 54

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARY 107
           A+ VDH LR+ +  E + V++    L   H    W        +S   + +  AAR  RY
Sbjct: 55  ALIVDHRLRDGSAVEAQAVAEAVRNLG--HRTQVWALTNFGGSSSSSSSSIETAARHFRY 112

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
             +           ++ AH  DDQ ETV +R    Y   G G+ G+     
Sbjct: 113 RCLGVRMAQSRLVSLLLAHHADDQYETVLLRLLTGYGLHG-GIRGLRGMRP 162



 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHALYL 218
           DL +   RP L   +  + +     N+ W EDP+N D     R  VR   R   L A   
Sbjct: 261 DLGIVAYRPLLAFPKARLIATCEAHNVPWFEDPTNADPGLTLRNAVRHIARHHRLPAALQ 320

Query: 219 KMKKFQDLRVKVNNAVAMLIPK-YLTVHMRSIIAIS 253
                +        AVA       L V  R ++  S
Sbjct: 321 PPSVLRLAERCHATAVAQEAEASRLLVRARVVVRFS 356


>gi|225075267|ref|ZP_03718466.1| hypothetical protein NEIFLAOT_00270 [Neisseria flavescens
           NRL30031/H210]
 gi|224953442|gb|EEG34651.1| hypothetical protein NEIFLAOT_00270 [Neisseria flavescens
           NRL30031/H210]
          Length = 319

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 92/270 (34%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +  +      +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLEEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFVSLERGQSLKHGGDLAFDSEKM 280


>gi|15606536|ref|NP_213916.1| hypothetical protein aq_1333 [Aquifex aeolicus VF5]
 gi|2983761|gb|AAC07321.1| hypothetical protein aq_1333 [Aquifex aeolicus VF5]
          Length = 301

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 22/229 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +       +LVA+SGG DS+ L   L  +  +     I          + E ++     
Sbjct: 42  FKMFTKKDKVLVAISGGKDSLALWHVLRKLGYEADGLYINL-------GIGEYSEKSKEK 94

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTG--LMAAAREA--------RYALISEHAKTINATLI 122
           V     ++     +V  K         +   +REA        RY   ++ AK     +I
Sbjct: 95  VLKFAEKINGKAIIVDLKEELAGIPELVKITSREACSVCGLVKRYN-FNKVAKEHGYNVI 153

Query: 123 MTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            T H  DD+   +       +    G     + +   +   +   +PF +   ++   + 
Sbjct: 154 ATGHNLDDEASALLANVLNWNEKYLGRKYPVLEEEAGF---VRKVKPFCKFTEKETALYA 210

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           L   I + E+     +    V  ++ + +I+  +   K++ + D   K+
Sbjct: 211 LLNGIDFIEEECPFSEDATSVFYKKILNEIEERSPGTKLRFYLDYLRKI 259


>gi|15920850|ref|NP_376519.1| hypothetical protein ST0630 [Sulfolobus tokodaii str. 7]
 gi|15621634|dbj|BAB65628.1| 318aa long hypothetical veg136 protein [Sulfolobus tokodaii str. 7]
          Length = 318

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 26/228 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-ISVDH 60
           F   ++  + F  S      I VAVSGG DS  LL  +  +   + F  I  +  + +D 
Sbjct: 34  FERIVDKYKMFENS----KKIAVAVSGGKDSTTLLHLMKKLSEKKGFEIIGINIDLGIDM 89

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----------KPQTGLMAAAREARYALI 110
             + ++K     + +    L + + +V  K            K +  + +     +   +
Sbjct: 90  GKQYSSKSTEFALKNF-EMLGVKYRIVRIKERYGFTIDDAKHKIKRPVCSTCGLVKRYTL 148

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +E A+   A  I+T H  +D  +   M    +   + +    +         +   +P  
Sbjct: 149 TEIAEEEGADTIVTGHNLNDMAQ-FIMAGYFNGDVRDLARLDIITPPEKGYKVTKVKPLF 207

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERV------RVRRFVRDID 212
               ++I ++ L + I +  D         RV       +RR + +++
Sbjct: 208 LIYEKEILTYALVKGIPFLYDSC---PHTFRVGGATQDTIRRKLEELE 252


>gi|269792410|ref|YP_003317314.1| PP-loop domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100045|gb|ACZ19032.1| PP-loop domain protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 247

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 75/214 (35%), Gaps = 16/214 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++V  F   +     I++ +SGG DSM LL      L  RS  +       +D     T 
Sbjct: 19  KAVHLF-SMIAPGDRIMIGLSGGKDSM-LLSICLRELQRRSPVRFHLMTCFID----PTG 72

Query: 67  KD-EVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINAT 120
            + +     +  + + +   ++          + +    +     R  +++  A+     
Sbjct: 73  GEMDPAPFEEFSANIGVPFVLIRHDTFKIIEGRGERNPCSLCANLRRGILASAARERGCN 132

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I   H  DD +ET  M         G   S      +   N+ + RP +  R   I + 
Sbjct: 133 AIALGHHLDDAVETAMMNLL----MAGRFRSFEPAMTMSRSNVKVIRPLVLLRESAIEAE 188

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           + +  +     P       +R RV+  +R+I+  
Sbjct: 189 VRRLGLKTMAPPCPFGRVTQRTRVKGLIREIESE 222


>gi|303247997|ref|ZP_07334263.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ]
 gi|302490554|gb|EFL50459.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ]
          Length = 255

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 17/187 (9%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-V 73
            L   A + VAVSGG DS+ +L  L  +        ++   + ++         E    +
Sbjct: 33  QLAPKARVGVAVSGGVDSLVMLAVLA-IRRRIVPFPVELMLLHLN----PGFDKENHLPL 87

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D+ + + +A  +        ++     +          R   + +       T +   H
Sbjct: 88  VDLAAEMGLAAHIEVTDFGPRAFSEENKKNSPCFYCAWLRRKRLFDLCAAYGLTHLAFGH 147

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD   T ++   ++    G+     C    +   L + RP L   ++ I        +
Sbjct: 148 NADDLAATFFLNMFQNGRVDGLS----CRESFFHGRLTVIRPLLLVDKKSIIRAAKAWEL 203

Query: 187 SWCEDPS 193
               +P 
Sbjct: 204 PVFANPC 210


>gi|116690998|ref|YP_836621.1| PP-loop domain-containing protein [Burkholderia cenocepacia HI2424]
 gi|205830563|sp|A0KB51|TTCA_BURCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|116649087|gb|ABK09728.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia cenocepacia HI2424]
          Length = 331

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 42  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +   ++ +   +       +  +         +     R  +
Sbjct: 101 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 157 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 212

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +R+ D          F  L
Sbjct: 213 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNAL 270

Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256
              V ++ +   +  + ++          DI
Sbjct: 271 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 301


>gi|304313052|ref|YP_003812650.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [gamma proteobacterium HdN1]
 gi|301798785|emb|CBL47018.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [gamma proteobacterium HdN1]
          Length = 284

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 17/179 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  +L  L ++  D    K +  A+++D   +    +E+        
Sbjct: 36  GDRIMVCLSGGKDSYTMLDILMNLQHDAPV-KFELVAVNLD-QKQPGFPEEILPA--YLQ 91

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L I   ++                 + +     R   +   A+ I AT +   H  DD 
Sbjct: 92  ELGIPFYILEEDTYSVVKSHIPEGKTMCSLCSRLRRGHLYSFAEEIGATKVALGHHRDDI 151

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
           +ET+++         G  L GM   +L D    I  RP   C+ +DI  +   R     
Sbjct: 152 METLFLNMF-----YGGKLKGMPPKLLSDDGKHILIRPMAYCKEQDIIEYAAIREFPII 205


>gi|303246570|ref|ZP_07332848.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ]
 gi|302491910|gb|EFL51788.1| PP-loop domain protein [Desulfovibrio fructosovorans JJ]
          Length = 302

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 64/198 (32%), Gaps = 20/198 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E+       ++    +LVAVSGG DS+ LL  L  +  D        + + V   
Sbjct: 30  FKKQVETAIRRHGMILPGEKVLVAVSGGKDSLALLRVLSDLGHD-------VAGLHVHLG 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           + +++          C     A  V+   +            +  + +   + +    + 
Sbjct: 83  IPDSSDPVCERTEAYCRENGFALHVLRMADVGLAIPEVKDAVRRPICSVCGKIKRHYFNR 142

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLR 171
            A       + T H  DD++  ++    R        L G    +  +   +   +P  R
Sbjct: 143 FAYENGYAALATGHNLDDEVARLFANVLR---WDAAYLGGQGPMLPAEGRFVRKIKPLYR 199

Query: 172 CRREDIRSFLLQRNISWC 189
               +  ++   + I   
Sbjct: 200 LTEFETAAYCFFKGIDHW 217


>gi|305662983|ref|YP_003859271.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377552|gb|ADM27391.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
          Length = 321

 Score = 94.6 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 87/230 (37%), Gaps = 32/230 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            IL+AVSGG DSM LL  ++S+  +RS   ++  A+ +D  + E ++     VS +    
Sbjct: 49  RILIAVSGGKDSMALLHIMNSISQERS---LRVLALHIDLGIGEYSRRSREIVSMIAKSF 105

Query: 81  RIAHSVVSWKNSKPQTGLMAA---AR--------EARYALISEHAKTINATLIMTAHTFD 129
            I   V   K     +         R          RY +++  A  + AT + TAH  D
Sbjct: 106 GIDLIVYDLKRDLGLSLPEMKKGIRRGTCSLCGLVKRY-VMNTAAIELGAT-LATAHNAD 163

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---SRPFLRCRREDIRSFLLQRNI 186
           D    +            + L      ++ ++  ++    RP       +   +++ +NI
Sbjct: 164 DIAIYILKNIVIGDWNSCIKLV----PVIPEVKGYVAKKIRPLYEVYENEAMLYVVSQNI 219

Query: 187 SWCEDPSNTDDRFE-RV----RVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
            + +        +  R     RVR F+  ++     +K+   +     + 
Sbjct: 220 PYVDMECP----YTYRGGIEERVREFLNKLEEERPGIKISFLRKFTRNIE 265


>gi|293606581|ref|ZP_06688938.1| cell cycle protein MesJ [Achromobacter piechaudii ATCC 43553]
 gi|292815057|gb|EFF74181.1| cell cycle protein MesJ [Achromobacter piechaudii ATCC 43553]
          Length = 231

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 25/235 (10%)

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           R+ARYA ++  A+   A+L++ AH  DDQ ETV +R  R     GM        +     
Sbjct: 1   RDARYAALARLAQDEGASLVLLAHHRDDQAETVLLRLLRGAGVLGMAAM---SEVSQRDG 57

Query: 163 LWISRPFLRCRREDIRSFL----LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL 218
           +   RP+L   R  I                +DP+N D R+ R  VR  +  +    L  
Sbjct: 58  ITYLRPWLGQDRATILEAADAVRQASGWQAVQDPTNADPRYTRAAVRELLAPV----LDG 113

Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI----------LNIDSTLLFYLL 268
           +   ++ +  +    +A  +     V       +                +       +L
Sbjct: 114 RWPGWRAIVARHAAHMAEAVQILDEVARDDFARLEPSADGVSFSLKAWRELSPARQAQVL 173

Query: 269 RVSAAICGGQISLPGYRSMERVMLF----LKSGKRGCVSIGRVVIDRRANFLWIT 319
           R    + G ++            L     L   ++  V     V+      +W+ 
Sbjct: 174 RFWLHLNGARMPTDARLRDLLRQLRELHSLGHDRQLRVVQAGHVVRCHRGRVWVE 228


>gi|33603590|ref|NP_891150.1| hypothetical protein BB4618 [Bordetella bronchiseptica RB50]
 gi|81579749|sp|Q7WEL6|TTCA_BORBR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|33577715|emb|CAE34980.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 320

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 74/223 (33%), Gaps = 20/223 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ++V +SGG DS  LL  L S+     F   +  A+++D   +     E+    D  
Sbjct: 45  AGDKVMVCLSGGKDSYALLDILLSLQKRAPFA-FEIIAVNLD-QKQPGFPPEILP--DYL 100

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +   +       +  +       + +     R  ++   A  + AT I   H  DD
Sbjct: 101 RALGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDD 160

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T ++        KGM        +  D    + RP       D+ ++   +      
Sbjct: 161 ILGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVPESDLIAYAQFKQFPII- 215

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            P N     +  +R  V R +++ D          F  L   V
Sbjct: 216 -PCNLCGSQENLKRKEVGRMIQEWDRKHPGRSWNVFNALSRVV 257


>gi|217968052|ref|YP_002353558.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217337151|gb|ACK42944.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 318

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 26/202 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+  + F ++      ILVAVSGG DS+ L   L S+         K   + +D  + 
Sbjct: 36  KAIKKYKMFEKN----DQILVAVSGGKDSLALWDILISL-------GYKADGLHIDLGIS 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEH 113
           E ++     V        +   ++S K+           K +    A     +  +++  
Sbjct: 85  EYSEKSKETVKKFAESKNLKLHIISIKDLYGLGIKEIAHKNRKTPCATCGVIKRYIMNLA 144

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSG--MCDTILYDLNLWISRPFLR 171
           A  +   +I T H  DD+  T+         +     S   + D + +       +P  R
Sbjct: 145 ALELKYNVIATGHNLDDESATLLGNILHWQIDYLKAHSPILLEDEVGFARK---VKPLYR 201

Query: 172 CRREDIRSFLLQRNISWCEDPS 193
               +  ++ + + I +  D  
Sbjct: 202 VSEYETSAYCIMKKIEYIIDEC 223


>gi|77165079|ref|YP_343604.1| ATPase [Nitrosococcus oceani ATCC 19707]
 gi|123594216|sp|Q3JAS2|TTCA_NITOC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|76883393|gb|ABA58074.1| tRNA s(2)C-32 sulfurtransferase [Nitrosococcus oceani ATCC 19707]
          Length = 302

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L S+       K    A+++D   +        +V     
Sbjct: 36  GDRLMVCLSGGKDSYALLDILLSLQKHAPV-KFDLIAVNLD-QKQPG---FPEHVLPHYL 90

Query: 78  SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +++ +V         +         +     R  ++   A+ + AT I   H  DD
Sbjct: 91  ESLGVSYRIVEQDTYSVVKRVIPEGKTTCSLCSRLRRGILYGTAEELGATKIALGHHRDD 150

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET ++            L GM   +L D    I  RP   CR +D+ ++   +     
Sbjct: 151 ILETFFLNMFHGGT-----LKGMPPKLLSDNGRHIVIRPLAYCREKDLETYAHLKAFPII 205

Query: 190 EDPSNT 195
             P N 
Sbjct: 206 --PCNL 209


>gi|308158669|gb|EFO61238.1| ATPase of the PP-loop superfamily implicated in cell cycle control,
           putative [Giardia lamblia P15]
          Length = 360

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 84/244 (34%), Gaps = 49/244 (20%)

Query: 13  VRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSAISVDHCLRETAKDE 69
           + +L+ P   I + VSGG DS  +L  LH++       +  ++F  ++V+  ++    + 
Sbjct: 50  IHNLIRPGESIALGVSGGKDSSVMLHILHTLRLRYQDVYDGVRFVMVAVNEGIQGYRGES 109

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----------------------GLMAA------ 101
           +  +  +  +      +V +K    +T                       L  A      
Sbjct: 110 LACLQRLRKKYPYELEIVGFKERYGRTLDQIVNTVNGDSCNDTFAPIKADLEDANDTGRP 169

Query: 102 ------------AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149
                           R   +S  +   + T + T H  DD  ET+ +   R  A K + 
Sbjct: 170 QPTAKTTTACSFCGILRRNSLSYGSLQTHCTKVATGHNADDNAETILLNLIRGDAAKLV- 228

Query: 150 LSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207
               C   L DLN  ++R  P     + DI  +   + + +            R + R F
Sbjct: 229 ---RCSEPLSDLNQGVARIKPLCNIAQRDIVIYAHLKRLDYFSVECPYATTALRGKPRSF 285

Query: 208 VRDI 211
           + ++
Sbjct: 286 LTNL 289


>gi|308163116|gb|EFO65476.1| PP family ATPase [Giardia lamblia P15]
          Length = 301

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 21/223 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +A+SGG DS  LL  L  + + RS  K     ++V+        +  +    + 
Sbjct: 62  QGDRVALALSGGKDSWTLLHVLLDI-AKRSPVKFTVIPVTVETGYPGFEANVAKLTKYIE 120

Query: 78  SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L I H V+          N +  T   +     R   +  H + +    +   H  +D
Sbjct: 121 ENLGIKHVVIKETFPEIIDGNLRQGTSNCSFCARLRRGTLYTHCQKLGINKLALGHHRED 180

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             E++ M    +      G          + N+ + RP + C  ED  ++          
Sbjct: 181 VNESLLMSLFFNGKLWTQGPIIHNS----EKNITLIRPMVFCAEEDTIAYARHSTFPIVT 236

Query: 191 --DPSNTDDRFERVRV-------RRFVRDIDLHALYLKMKKFQ 224
              P   +    R ++       R+++ DI    L    + FQ
Sbjct: 237 CNCPHEGNKEHRRYKIKQTILAMRQWIPDIQRSILTGATELFQ 279


>gi|189460555|ref|ZP_03009340.1| hypothetical protein BACCOP_01196 [Bacteroides coprocola DSM 17136]
 gi|189432799|gb|EDV01784.1| hypothetical protein BACCOP_01196 [Bacteroides coprocola DSM 17136]
          Length = 249

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 34/229 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRYV 73
              ILV +SGG DS+  L+ L +  S     +    A  V      +      + ++ Y+
Sbjct: 31  GDKILVGLSGGKDSLA-LLELLARRSRIYKPRFSVVAAHVVMTNIAY------ESDMDYL 83

Query: 74  SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                 L +    V ++ S       +          R   +   AK      I   H  
Sbjct: 84  RSFAENLGVPF--VRYETSFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHM 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN--- 185
           DD LET+ M      A +G   +     ++   ++ I RP       D+      +    
Sbjct: 142 DDILETLLMNM----AFQGAFSTMPPRLVMRKFDMTIIRPMCLVHEADLIEMAQAKGYRK 197

Query: 186 ----ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
                 + +D   +D +     V R +  ++  A Y       +++  +
Sbjct: 198 QIKNCPYEKDSHRSDMK----EVLRTLERMNPEARYSLWGSMNNIQTDL 242


>gi|167392464|ref|XP_001740167.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165895845|gb|EDR23434.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 250

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 26/185 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLR-ETAKDEV 70
                I++  SGG DS  L+  L  +     F  +    + V      + L  E +    
Sbjct: 32  APHDRIIIGFSGGKDSFLLVHILSVLGKTSHFP-LDILVVHVTNKQVGYQLNIEDS---- 86

Query: 71  RYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                +C  + I            +  +++   T       + R   + E+AK    T I
Sbjct: 87  ---KALCESMGIPFITLESEPVSKIDIEDADKNTTFCLNCGKNRRRALLEYAKEHGYTSI 143

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
              H  DD  ET+ M         G   S           +   RP +      I+ +  
Sbjct: 144 ALGHHMDDVAETLLMNQM----FCGCIASIPAQFTTEKYGVKFIRPLIEVPVVFIQEWTK 199

Query: 183 QRNIS 187
              + 
Sbjct: 200 YIKLP 204


>gi|254434620|ref|ZP_05048128.1| hypothetical protein NOC27_1551 [Nitrosococcus oceani AFC27]
 gi|207090953|gb|EDZ68224.1| hypothetical protein NOC27_1551 [Nitrosococcus oceani AFC27]
          Length = 304

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L S+       K    A+++D   +        +V     
Sbjct: 38  GDRLMVCLSGGKDSYALLDILLSLQKHAPV-KFDLIAVNLD-QKQPG---FPEHVLPHYL 92

Query: 78  SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +++ +V         +         +     R  ++   A+ + AT I   H  DD
Sbjct: 93  ESLGVSYRIVEQDTYSVVKRVIPEGKTTCSLCSRLRRGILYGTAEELGATKIALGHHRDD 152

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET ++            L GM   +L D    I  RP   CR +D+ ++   +     
Sbjct: 153 ILETFFLNMFHGGT-----LKGMPPKLLSDNGRHIVIRPLAYCREKDLETYAHLKAFPII 207

Query: 190 EDPSNT 195
             P N 
Sbjct: 208 --PCNL 211


>gi|115947384|ref|XP_788702.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115954905|ref|XP_001175915.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 992

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 85/236 (36%), Gaps = 28/236 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIAL--HSVLSDRSFGKIKFSAISVD-----HCLRETA 66
           + L     +LV +SGG DS+ LL  L  +   + +        A++VD        R   
Sbjct: 749 KMLRDGDRVLVCLSGGKDSLSLLHCLRQYQFAAKKKGITFDLGAVTVDPQTPSFNPRP-- 806

Query: 67  KDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQ--TGLMAAAREARYALISEHAKTINA 119
                 +    ++L + +      ++    S P     + +     +   +   A+    
Sbjct: 807 ------LIGYLAKLGLPYFYEEQCIIDQAASLPDGCASICSFCSRMKRGRLYACARREGY 860

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            ++      DD  E+  M +  +   +    +   +  + + +L + RPF+  R +D+R 
Sbjct: 861 NVLAMGQHLDDLTESFLMSAFHNGFLR----TMKANYTVKEGDLRVIRPFVYVREKDLRD 916

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           F  Q  +       N    FE  + R  V+ +      L  + +  L+  +   +A
Sbjct: 917 FADQAKLPVI--SENCPACFEAPKERHRVKQLLASQELLFPRLYPSLQTALRPLMA 970


>gi|91785571|ref|YP_560777.1| hypothetical protein Bxe_A0206 [Burkholderia xenovorans LB400]
 gi|123358392|sp|Q13T64|TTCA_BURXL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|91689525|gb|ABE32725.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia xenovorans LB400]
          Length = 336

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 85/238 (35%), Gaps = 30/238 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 67  GDKVMVCLSGGKDSYAMLEILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 121

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L I   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 122 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 181

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 182 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 236

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            P N        +R  ++  VRD +        K+F      + NA+A ++P +L  H
Sbjct: 237 -PCNLCGSQPNLKRAEMKALVRDWE--------KRFPGRIENMFNALANVVPSHLMDH 285


>gi|14521864|ref|NP_127340.1| hypothetical protein PAB1092 [Pyrococcus abyssi GE5]
 gi|5459084|emb|CAB50570.1| Predicted ATPase of the PP-loop superfamilyl [Pyrococcus abyssi
           GE5]
          Length = 303

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 27/199 (13%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     ILVAVSGG DS      L+ +             + ++  + E +K    Y 
Sbjct: 42  KLLKKDEKILVAVSGGKDSAVTAYVLNKL-------GYNIECLHINLGIGEYSKKSEEYA 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMT 124
              C  +     +V  K            R           RY ++++ A       I T
Sbjct: 95  KKQCELIGAPLHIVRIKEILGYGIGEVKTRRPTCSYCGLTKRY-IMNKFAYDNGFDAIAT 153

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLL 182
            H  DD+  +  +    +              +L     ++   +P       ++ ++ L
Sbjct: 154 GHNLDDEA-SFLLN---NLLYWNTEYIAKGGPLLPAEGKFVKKVKPLYELTEREVVAYAL 209

Query: 183 QRNISWCEDPSNTDDRFER 201
              + +  +       + R
Sbjct: 210 AVGLEYIVEECP----YAR 224


>gi|148244684|ref|YP_001219378.1| hypothetical protein COSY_0536 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326511|dbj|BAF61654.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 246

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 63/189 (33%), Gaps = 14/189 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            + +     +L+AVSGG DS+ L       L        +F  +++D  +      E + 
Sbjct: 23  FKMIKKDDKVLLAVSGGKDSLSLFHIFRHFLVSAPIY-FEFGVVTIDPKI---DGFEPQA 78

Query: 73  VSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +     +    +   ++   K            +     +  L+ + A+     ++   H
Sbjct: 79  LEYFFRKFDTPYFFETFSIMKQAEKSMKGNSYCSFCARIKRGLMYQVARREGYNVLALGH 138

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  E++ M    +   + M    + D      +L + RP    R   +  F    ++
Sbjct: 139 HLDDLAESLMMSMCHNGKIQTMKAHYIND----AKDLRVIRPLTYVRERQLADFAKITHL 194

Query: 187 SWCEDPSNT 195
              +D    
Sbjct: 195 PVIKDSCPA 203


>gi|307596367|ref|YP_003902684.1| PP-loop domain-containing protein [Vulcanisaeta distributa DSM
           14429]
 gi|307551568|gb|ADN51633.1| PP-loop domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 393

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 24/215 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVAVSGG DS  +L  L ++   R   K    A  +D  +   +      V ++  RL 
Sbjct: 117 VLVAVSGGKDSSTMLHVLSTL---RDSLKFDIVAYHIDQGIPGYSDKARSAVEELARRLN 173

Query: 82  IAHSVVSW------------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +   + ++            K  K +    +     R    +  A  +NA+ I T H  D
Sbjct: 174 VPLIISTFKEMLGVDQPTLIKGMKSRRPPCSVCGIIRRYSYNALAMELNASSIATGHHAD 233

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D              +    L  +  T  ++  +   RP      ++   + L   I + 
Sbjct: 234 DIASYALKAVLTHDYQSLTKL--LPKTEPFEGAVAHIRPLYEIYEKETLLYALASEIPFT 291

Query: 190 EDPSNTDDRFERV----RVRRFVRDIDLHALYLKM 220
             P        R      ++ F+ +++     +K+
Sbjct: 292 ACPCPFRP---RNTLDDHIKEFLNNLETRHPGIKL 323


>gi|296157394|ref|ZP_06840229.1| PP-loop domain protein [Burkholderia sp. Ch1-1]
 gi|295892166|gb|EFG71949.1| PP-loop domain protein [Burkholderia sp. Ch1-1]
          Length = 339

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 85/261 (32%), Gaps = 29/261 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 70  GDKVMVCLSGGKDSYAMLEILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 124

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L I   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 125 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 184

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 185 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 239

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM-------LIPK 240
            P N        +R  ++  VRD +          F  L   V + +          +  
Sbjct: 240 -PCNLCGSQPNLKRAEMKALVRDWEKRFPGRIENMFNALSNVVPSHLMDHKLFPFAALRA 298

Query: 241 YLTVHMRSIIAISQDILNIDS 261
                 +  IA  ++  + D+
Sbjct: 299 TGEADPQGDIAFDEEPCSTDA 319


>gi|254283800|ref|ZP_04958768.1| pyridoxamine 5'-phosphate oxidase [gamma proteobacterium NOR51-B]
 gi|219680003|gb|EED36352.1| pyridoxamine 5'-phosphate oxidase [gamma proteobacterium NOR51-B]
          Length = 302

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 79/230 (34%), Gaps = 22/230 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V VSGG DS  +L  L  +         +  A+++D   +        +V  + 
Sbjct: 57  SGDRVMVCVSGGKDSYTMLDLLMQLRVSAPV-DFELIAVNLD-QKQPG---FPEHVLPEY 111

Query: 77  CSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFD 129
             +L I   ++          +              R   +   A+ I AT I   H  D
Sbjct: 112 LEQLDIPFYILERDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAEQIGATKIALGHHRD 171

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+++        K M    + D    D    + RP   C+ EDI  +   +     
Sbjct: 172 DIVETLFLNMFFGGKLKAMPPKLLSD----DGQNVVIRPLAYCKEEDISRYAQAQAFPII 227

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
             P N     +  +R  V++ +RD +          F+ +     + +A 
Sbjct: 228 --PCNLCGSQENLQRANVKQMLRDWERQYPGRTETIFRSISNVSPSQLAD 275


>gi|304319948|ref|YP_003853591.1| ATPase of the PP superfamily protein [Parvularcula bermudensis
           HTCC2503]
 gi|303298851|gb|ADM08450.1| ATPase of the PP superfamily protein [Parvularcula bermudensis
           HTCC2503]
          Length = 285

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 15/183 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  +       A  LV +SGG DS  LL  L  + +      +   A ++D   +   
Sbjct: 39  EAISRYAMVSKPGARWLVCLSGGKDSYTLLTLLMDLKAQ-GRLDVDLVAANLD-QAQPGF 96

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN-------SKPQTGLMAAAREARYALISEHAKTINA 119
             EV         L +AH +            + P   L       R   +   A+    
Sbjct: 97  PTEVLP--HYLEGLGLAHRIDRRDTYSTVIEKTAPGQTLCTLCSRLRRGHLYRMAREEGC 154

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I   H  DD LET ++        + M  + M D    + ++ + RP    R  DI  
Sbjct: 155 DAIALGHHADDILETFFLNLFHGGRLEAMSPNLMND----EGDVQVVRPLTLVREADIVR 210

Query: 180 FLL 182
           F  
Sbjct: 211 FAE 213


>gi|313668399|ref|YP_004048683.1| hypothetical protein NLA_10940 [Neisseria lactamica ST-640]
 gi|313005861|emb|CBN87317.1| hypothetical protein NLA_10940 [Neisseria lactamica 020-06]
          Length = 319

 Score = 94.2 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFAGLERGQSLKHGGDLAFDSEKM 280


>gi|269102678|ref|ZP_06155375.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162576|gb|EEZ41072.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 309

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 88/257 (34%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  +L  L S+       K +  A+++D   +    D    + +   
Sbjct: 39  GDRIMVCLSGGKDSYAMLDILRSLQRSAPV-KFELIAVNLD-QKQPGFPD--HILPEYLD 94

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L + + +V+                  +     R  ++   AK I AT I   H  DD 
Sbjct: 95  TLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTAKEIGATKIALGHHRDDM 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+++         G  L  M   ++ D     + RP   CR +DI  F   +      
Sbjct: 155 LETLFLNMF-----YGGKLKSMPPKLVSDNGEHVVIRPLAYCREKDIERFAELKEFPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  +RD D          F  L+  V + +A           +
Sbjct: 209 -PCNLCGSQPNLQRQVIKDMLRDWDRRYPGRIETMFTALQNVVPSHLADFNLFDFKSVTK 267

Query: 248 SIIAISQDILNIDSTLL 264
               I    +  D   +
Sbjct: 268 ESGTIDGGDIAFDKQEI 284


>gi|254805067|ref|YP_003083288.1| putative PP-loop ATPase [Neisseria meningitidis alpha14]
 gi|205830655|sp|A9LZH0|TTCA_NEIM0 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254668609|emb|CBA06181.1| putative PP-loop ATPase [Neisseria meningitidis alpha14]
          Length = 319

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280


>gi|86157330|ref|YP_464115.1| C32 tRNA thiolase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123499724|sp|Q2IPE3|TTCA_ANADE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|85773841|gb|ABC80678.1| tRNA s(2)C-32 sulfurtransferase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 290

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 77/234 (32%), Gaps = 17/234 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +  +  E++R F   +     I+VAVSGG DS  LL  L  +  +R+       A+++D 
Sbjct: 11  LLRATAEAIRDF-DLVSQGDRIMVAVSGGKDSYTLLHLLMRL-RERAPIDFDLVAVNLD- 67

Query: 61  CLRETAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEH 113
             +         V D    L + +         V  +               R  ++   
Sbjct: 68  --QGQPGFPAHVVEDHLRSLGVPYRMLQRDTYSVVRRLVPEGKTTCPVCSRLRRGVLYNA 125

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  +  T I   H  DD +ET+ +         G   S        D    + RP     
Sbjct: 126 AVEMGCTKIALGHHRDDLVETLLL----SALYSGALKSMPPKLRSRDGRNVVIRPLCYAA 181

Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            ED+ +F           D   +     R RV+R + ++      +K      L
Sbjct: 182 EEDVAAFAEAMRFPIVPCDLCGSQPNLRRKRVKRLLAELSAEHPAVKGNLLHAL 235


>gi|159115248|ref|XP_001707847.1| ATPases of the PP-loop superfamily [Giardia lamblia ATCC 50803]
 gi|157435955|gb|EDO80173.1| ATPases of the PP-loop superfamily [Giardia lamblia ATCC 50803]
          Length = 301

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 21/223 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +A+SGG DS  LL  L  + + RS  K     ++V+        +  +    + 
Sbjct: 62  QGDRVALALSGGKDSWTLLHVLLDI-AKRSPVKFTVIPVTVETGYPGFEANVAKLTKYIE 120

Query: 78  SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L I H V+          N +  T   +     R   +  H + +    +   H  +D
Sbjct: 121 ENLGIKHVVIKETFPEIIDGNLRQGTSNCSFCARLRRGTLYTHCQKLGINKLALGHHRED 180

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             E++ M    +      G          + N+ + RP + C  ED  ++          
Sbjct: 181 VNESLLMSLFFNGKLWTQGPIIHNS----EKNVTLIRPMVFCAEEDTIAYARHSTFPIVT 236

Query: 191 --DPSNTDDRFERVRV-------RRFVRDIDLHALYLKMKKFQ 224
              P   +    R ++       R+++ DI    L    + FQ
Sbjct: 237 CNCPHEGNKEHRRYKIKQTILTMRQWIPDIQRSILTGATELFQ 279


>gi|167756861|ref|ZP_02428988.1| hypothetical protein CLORAM_02410 [Clostridium ramosum DSM 1402]
 gi|167703036|gb|EDS17615.1| hypothetical protein CLORAM_02410 [Clostridium ramosum DSM 1402]
          Length = 258

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 20/223 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDV 76
              + V VSGG DSM LL  L S+    +  K     + ++      + ++ +       
Sbjct: 35  GDKVCVGVSGGKDSMLLLYCL-SLYKKFATVKFDVIGVHIEMGFPNMDFSEADA-----F 88

Query: 77  CSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           C +  I           ++    +       +   + + AL+ + AK      +  AH  
Sbjct: 89  CKKNGIELYHEPSDVYEILKLNKTDDGRLQCSLCSKFKKALVIDGAKKYRCNKVAFAHHG 148

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET++M         G   +      L    +   RP +     DI S + + ++  
Sbjct: 149 DDAVETLFMNMIYG----GKIATFTPKMYLTRTEMNFIRPLVYAYESDIVSAVEEAHVPI 204

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
                  D   +R   +  + D+ L     K      L  + N
Sbjct: 205 VPSTCPADKHTKREEFKHLLNDLYLKYPQAKSNLLTSLTNEEN 247


>gi|307731306|ref|YP_003908530.1| PP-loop domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307585841|gb|ADN59239.1| PP-loop domain protein [Burkholderia sp. CCGE1003]
          Length = 324

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 30/238 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 55  GDKVMVCLSGGKDSYAMLDILMRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 109

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L I   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 110 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 169

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 170 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 224

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            P N        +R  ++  +RD +        K+F      + NA++ ++P +L  H
Sbjct: 225 -PCNLCGSQPNLKRAEMKALIRDWE--------KRFPGRIENMFNALSNVVPSHLMDH 273


>gi|323527653|ref|YP_004229806.1| PP-loop domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323384655|gb|ADX56746.1| PP-loop domain protein [Burkholderia sp. CCGE1001]
          Length = 324

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 85/238 (35%), Gaps = 30/238 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 55  GDKVMVCLSGGKDSYAMLDILMRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 109

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L I   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 110 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 169

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 170 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 224

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            P N        +R  ++  +RD +        K+F      + NA++ ++P +L  H
Sbjct: 225 -PCNLCGSQPNLKRAEMKALIRDWE--------KRFPGRIENMFNALSNVVPSHLMDH 273


>gi|317153081|ref|YP_004121129.1| PP-loop domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943332|gb|ADU62383.1| PP-loop domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 249

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 34/230 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV--SD 75
           + A I +A SGG DS  +L  L ++        ++  A+ ++        D   +    D
Sbjct: 30  HGARIGIAASGGVDSFLMLKVL-TIRQAIMPFPVELMALHINAGF-----DTASHAPLVD 83

Query: 76  VCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            C+  ++A  +               +          R   + E  +    T +   H  
Sbjct: 84  WCASHKLAAHIEVTDYGPRAHSEENRKKSPCFYCSMLRRKRLFELCRDYGLTHLAFGHNA 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD + T +M   ++   +G+ +    +   +D  L + RP +   ++ +     Q  +  
Sbjct: 144 DDNVVTFFMNIFQNGRVQGLSV----NEPFFDGRLNVIRPTMLLDKKTVIRAAKQWELPV 199

Query: 189 CEDPSNTDDRFER--------------VRVRRFVRD-IDLHALYLKMKKF 223
            E+   ++ R  R               R++  V + +  H L L  KK 
Sbjct: 200 WENTCPSNGRTRRDEIHDWLHQTWQNDNRMKNNVFNAVIRHQLDLTCKKL 249


>gi|187925700|ref|YP_001897342.1| PP-loop domain protein [Burkholderia phytofirmans PsJN]
 gi|205830571|sp|B2T6U6|TTCA_BURPP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|187716894|gb|ACD18118.1| PP-loop domain protein [Burkholderia phytofirmans PsJN]
          Length = 336

 Score = 93.8 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 85/262 (32%), Gaps = 29/262 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 67  GDKVMVCLSGGKDSYAMLEILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 121

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L I   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 122 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 181

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 182 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 236

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML-------IPK 240
            P N        +R  ++  VRD +          F  L   V + +          +  
Sbjct: 237 -PCNLCGSQPNLKRAEMKALVRDWEKRFPGRIENMFNALSNVVPSHLMDHKLFPFAGLRA 295

Query: 241 YLTVHMRSIIAISQDILNIDST 262
                 +  IA  ++  + D+ 
Sbjct: 296 TGEADPQGDIAFDEEPCSTDAA 317


>gi|154483148|ref|ZP_02025596.1| hypothetical protein EUBVEN_00849 [Eubacterium ventriosum ATCC
           27560]
 gi|149735956|gb|EDM51842.1| hypothetical protein EUBVEN_00849 [Eubacterium ventriosum ATCC
           27560]
          Length = 376

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 83/238 (34%), Gaps = 21/238 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DSM +      +     F   +   + +D       +  +    +   RL 
Sbjct: 138 IAVCISGGKDSMLMAKLFQELKLHNKF-DFQVKFLVMDPGYSPANRQVIE---ENARRLN 193

Query: 82  IAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I  ++            +          R   +   AK +    I   H +DD +ET+ M
Sbjct: 194 IPITIYESDIFESVFNVEKSPCYLCARMRRGHLYSFAKEMGCNKIALGHHYDDVIETILM 253

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS---- 193
                   + M       +  ++  + + RP    R +DI+++    ++ + +       
Sbjct: 254 GMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDDIKAWRDYNDLHFIQCACKFTD 310

Query: 194 ------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
                 N ++R +R+ ++  +R++     Y++   F+ +     N V       +  H
Sbjct: 311 TCTTCNNNENRSKRMEIKDLIRELKKVNPYVEGNIFKSIENVNLNTVVAYKKDGVKHH 368


>gi|332796837|ref|YP_004458337.1| PP-loop domain-containing protein [Acidianus hospitalis W1]
 gi|332694572|gb|AEE94039.1| PP-loop domain protein [Acidianus hospitalis W1]
          Length = 319

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 24/226 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRY 72
           + L+    IL+AVSGG DS+ L   L S +  +     +  A ++   +    + E    
Sbjct: 42  QGLLKANKILLAVSGGKDSLTLADTLASFIDPK-----RLVAFNIVEGISGYNRKEQAEK 96

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA--AARE-------------ARYALISEHAKTI 117
           +      L I     S+K+S   T      +AR               R  LI++  + +
Sbjct: 97  LRKYLDDLGIELISTSFKDSVGYTLDEMVSSARAKGLNISACTFCGGFRRKLINDAGRQV 156

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A L+ T H  DD+ +TV +   R   ++ + L G     L D  +   +P  +    + 
Sbjct: 157 KADLVATGHNLDDEAQTVIVNILRGDVKRLVRL-GDVPLKLSDKFVLRVKPLRKIYEWET 215

Query: 178 RSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHALYLKMK 221
             +   +   + E            R +VR  +  I+       ++
Sbjct: 216 TMYAFLKGFEFQEVECPYISARPTLRAKVRELLYLIEQQKPGSLLR 261


>gi|325678703|ref|ZP_08158312.1| PP-loop family protein [Ruminococcus albus 8]
 gi|324109604|gb|EGC03811.1| PP-loop family protein [Ruminococcus albus 8]
          Length = 290

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 15/180 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVRYV 73
           +     I V +SGG DSM + + +  +     + K+ F    I +D       +   + +
Sbjct: 33  IQEGDKIAVCISGGKDSMMMAMCMKRLQ---RYSKVPFDVEYIVMDPGYNAENR---QKI 86

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            D  ++L I   +   K        +          R   + ++A+ +    I   H FD
Sbjct: 87  IDNAAKLEIPVRIFDTKIFDSVVNVRQNPCYLCARMRRGYLYKNAQELGCNKIALGHHFD 146

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        + M      +       + + RP    R EDI  +     + + 
Sbjct: 147 DVIETILMGMLYGSQVQTMMPKIHSENF---EGMQLIRPLYMVREEDIIKWCRYNGLEFI 203


>gi|37526466|ref|NP_929810.1| C32 tRNA thiolase [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81419231|sp|Q7N3Y7|TTCA_PHOLL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|36785897|emb|CAE14949.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 306

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 86/257 (33%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L ++            A+++D   +        ++     
Sbjct: 36  GDRIMVCLSGGKDSYTLLSILQNLQKSAPV-NFSLVAVNLD-QKQPG---FPEHILPAYL 90

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 91  GELGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 150

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  +   +      
Sbjct: 151 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERYATAKAFPII- 205

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  +R+ D          F+ ++  V + ++            
Sbjct: 206 -PCNLCGSQPNLQRQVIKDMLREWDKRYPGRIETMFRAVQNVVPSHLSDFNLFDFKSITH 264

Query: 248 SIIAISQDILNIDSTLL 264
               I    L  D   L
Sbjct: 265 GSEVIDGGDLAFDREEL 281


>gi|226330282|ref|ZP_03805800.1| hypothetical protein PROPEN_04195 [Proteus penneri ATCC 35198]
 gi|225201077|gb|EEG83431.1| hypothetical protein PROPEN_04195 [Proteus penneri ATCC 35198]
          Length = 307

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 82/254 (32%), Gaps = 22/254 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L ++            A+++D   +        ++  +  
Sbjct: 34  GDKIMVCLSGGKDSYTLLSILMNLQKSAPI-NFSLIAVNLD-QKQPG---FPEHILPEYL 88

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + L + + +V                   +     R  ++   A  + AT I   H  DD
Sbjct: 89  NELGVEYKIVEENTYGIVKDIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++        KGM    M D    D    + RP    R +DI  F   +      
Sbjct: 149 ILETLFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYAREKDIERFAQAKQFPII- 203

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  +RD D          F+  +  V + +             
Sbjct: 204 -PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRATQNIVPSHLCDTQLFDFVNIKH 262

Query: 248 SIIAISQDILNIDS 261
               I+   L  D 
Sbjct: 263 GDEVINGGDLAFDK 276


>gi|218667600|ref|YP_002425839.1| PP-loop family protein [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519813|gb|ACK80399.1| PP-loop family protein [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 260

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 64/185 (34%), Gaps = 16/185 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71
            R +     +L+ +SGG DS+ LL  L ++           +  +VD      + D + +
Sbjct: 29  FRMIQPGDRVLLGLSGGKDSLTLLHLLRAMQRQSPVP-FDLAVATVD----PMSPDYDPQ 83

Query: 72  YVSDVCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTA 125
            +      L I + +      +       +    +     R  ++   A+     ++   
Sbjct: 84  PLVPYLRELGIPYFLERQNIYERAQKHLLRPSYCSFCARMRRGVLYRCARREGYQVLALG 143

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DD  E+ +M    +   +    +      + + +L + RP + CR    R F  ++ 
Sbjct: 144 QHLDDFAESFFMSMFYNGELR----TMKAHYRVREGDLRVIRPLVYCRERQTRQFATEQA 199

Query: 186 ISWCE 190
           +    
Sbjct: 200 LPVIH 204


>gi|237734571|ref|ZP_04565052.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382391|gb|EEO32482.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 258

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 20/223 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYVSDV 76
              + V VSGG DSM LL  L S+    +  K     + ++      + ++ +       
Sbjct: 35  GDKVCVGVSGGKDSMLLLYCL-SLYKKFATVKFDVIGVHIEMGFPNMDFSEADA-----F 88

Query: 77  CSRLRIAHS--------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           C +  I           ++    +       +   + + AL+ + AK      +  AH  
Sbjct: 89  CKKNGIELYHEPSDVYEILKLNKTDDGRLQCSLCSKFKKALVIDGAKKYRCNKVAFAHHG 148

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET++M         G   +      L    +   RP +     DI S + + ++  
Sbjct: 149 DDAVETLFMNMIYG----GKIATFTPKMYLTRTEMNFIRPLVYAYESDIVSAVEEAHVPI 204

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
                  D   +R   +  + D+ L     K      L  + N
Sbjct: 205 VASTCPADKHTKREEFKHLLNDLYLKYPQAKSNLLTSLTNEEN 247


>gi|254247003|ref|ZP_04940324.1| PP-loop [Burkholderia cenocepacia PC184]
 gi|124871779|gb|EAY63495.1| PP-loop [Burkholderia cenocepacia PC184]
          Length = 331

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 89/271 (32%), Gaps = 26/271 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 42  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +   ++ +   +       +  +         +     R  +
Sbjct: 101 LD-QKQPG---FPEHVLPEYLKQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 157 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 212

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +R+ D          F  L
Sbjct: 213 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNAL 270

Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256
              V ++ +   +  + ++          DI
Sbjct: 271 AKVVPSHLMDTTLYPFQSLRATGEADPQGDI 301


>gi|78355291|ref|YP_386740.1| hypothetical protein Dde_0244 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217696|gb|ABB37045.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 250

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 15/185 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A + VAVSGG DS  LL  L        F   +  A+ V+      +      + +
Sbjct: 27  LYPGARVGVAVSGGMDSWVLLQVLLYRQRIVPF-HFEIMALHVNPGFDPQSH---APLLE 82

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAKTINATLIMTAHTF 128
              R  +A  V    +                     R   + +     N T +   H  
Sbjct: 83  WLHRNGVAGHVELTDHGPRAHSPENRRNSPCFYCAMLRRKHLFDLCGRYNLTHLAFGHNA 142

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD + T YM        +GMG+        +   L + RP +   +  I   +    +  
Sbjct: 143 DDLVATFYMNLYEGGRVEGMGMC----EDFFGGMLKVIRPLMLVEKSVIHRAVRAWELPL 198

Query: 189 CEDPS 193
             +P 
Sbjct: 199 WTNPC 203


>gi|166030998|ref|ZP_02233827.1| hypothetical protein DORFOR_00679 [Dorea formicigenerans ATCC
           27755]
 gi|166029265|gb|EDR48022.1| hypothetical protein DORFOR_00679 [Dorea formicigenerans ATCC
           27755]
          Length = 390

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 27/194 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DSM L+  L   L        +   + ++      A +  + + D   
Sbjct: 142 GDKIAVCISGGKDSM-LMAKLFQELRKHGKANFELVFLVMNPGY--NADNW-KIIQDNAK 197

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L I  +V         +             R   +  HAK +    I   H +DD +ET
Sbjct: 198 VLGIPLTVFESNIFDTVADIDKNPCYLCARMRRGYLYSHAKELGCNKIALGHHYDDVIET 257

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFLLQRNISW 188
           + M         GM  SG  +T++  L       + + RP    +  DI  +     +++
Sbjct: 258 ILM---------GMLYSGKIETMMPKLHSTNFEGMELIRPMYLIKEADIIGWRDYNQLNF 308

Query: 189 CEDPSNTDDRFERV 202
            +       RF   
Sbjct: 309 IQCAC----RFTEN 318


>gi|330818524|ref|YP_004362229.1| PP-loop family protein [Burkholderia gladioli BSR3]
 gi|327370917|gb|AEA62273.1| PP-loop family protein [Burkholderia gladioli BSR3]
          Length = 329

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 90/282 (31%), Gaps = 32/282 (11%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+    +  A++
Sbjct: 41  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFEIVAVN 99

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +   ++ +   +       +  +         +     R  +
Sbjct: 100 LD-QKQPG---FPEHVLPEYLRQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 155

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 156 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGRNVVIRPL 211

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +RD D          F  L
Sbjct: 212 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 269

Query: 227 RVKVNNAVAML-------IPKYLTVHMRSIIAISQDILNIDS 261
              V + +          +           IA  +D    D+
Sbjct: 270 SAVVPSHLMDTTLFPFKDLRATGVADPAGDIAFDEDPCGTDA 311


>gi|325142448|gb|EGC64852.1| PP-loop family protein [Neisseria meningitidis 961-5945]
 gi|325198416|gb|ADY93872.1| PP-loop family protein [Neisseria meningitidis G2136]
          Length = 319

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280


>gi|309379188|emb|CBX22145.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 319

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280


>gi|295677983|ref|YP_003606507.1| PP-loop domain protein [Burkholderia sp. CCGE1002]
 gi|295437826|gb|ADG16996.1| PP-loop domain protein [Burkholderia sp. CCGE1002]
          Length = 333

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 30/238 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 65  GDKVMVCLSGGKDSYAMLDILMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 119

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++L I   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 120 TQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 179

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 180 ILQTLLLNLFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 234

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            P N        +R  ++  VRD +        K+F      + NA++ ++P +L  H
Sbjct: 235 -PCNLCGSQPNLKRAEMKALVRDWE--------KRFPGRIENMFNALSNVVPSHLMDH 283


>gi|289596443|ref|YP_003483139.1| PP-loop domain protein [Aciduliprofundum boonei T469]
 gi|289534230|gb|ADD08577.1| PP-loop domain protein [Aciduliprofundum boonei T469]
          Length = 288

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 76/201 (37%), Gaps = 21/201 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F   IE V   ++       I +A+SGG DSM LL       ++R +    +    ++ 
Sbjct: 27  LFERRIEKV---LKKYKPEGKIAIALSGGKDSMVLLH----YFAERDYDIFGYF---INL 76

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE--------ARYALISE 112
            + E +    + V + C    +   V + +  +   G+    R+         RY L+++
Sbjct: 77  GIGEHSDKMEKLVRNACKEYGVELIVTNLR-EEYGFGIENVRRKPCSACGTVKRY-LMNK 134

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +   A+++ T H  DD L+  +  +     +    +     +    +   I RP    
Sbjct: 135 VPRENGASVVTTGHNMDDFLDFFFKNTLAKNYQWNRNMVPYLPSEHPKMLPKI-RPLYLL 193

Query: 173 RREDIRSFLLQRNISWCEDPS 193
             ++I  +    N+ +  D  
Sbjct: 194 GDKEIGMYAKLNNVPYSSDKC 214


>gi|254166581|ref|ZP_04873435.1| hypothetical protein ABOONEI_1673 [Aciduliprofundum boonei T469]
 gi|197624191|gb|EDY36752.1| hypothetical protein ABOONEI_1673 [Aciduliprofundum boonei T469]
          Length = 272

 Score = 93.8 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 76/201 (37%), Gaps = 21/201 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F   IE V   ++       I +A+SGG DSM LL       ++R +    +    ++ 
Sbjct: 11  LFERRIEKV---LKKYKPEGKIAIALSGGKDSMVLLH----YFAERDYDIFGYF---INL 60

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE--------ARYALISE 112
            + E +    + V + C    +   V + +  +   G+    R+         RY L+++
Sbjct: 61  GIGEHSDKMEKLVRNACKEYGVELIVTNLR-EEYGFGIENVRRKPCSACGTVKRY-LMNK 118

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +   A+++ T H  DD L+  +  +     +    +     +    +   I RP    
Sbjct: 119 VPRENGASVVTTGHNMDDFLDFFFKNTLAKNYQWNRNMVPYLPSEHPKMLPKI-RPLYLL 177

Query: 173 RREDIRSFLLQRNISWCEDPS 193
             ++I  +    N+ +  D  
Sbjct: 178 GDKEIGMYAKLNNVPYSSDKC 198


>gi|241758779|ref|ZP_04756892.1| C32 tRNA thiolase [Neisseria flavescens SK114]
 gi|241320987|gb|EER57200.1| C32 tRNA thiolase [Neisseria flavescens SK114]
          Length = 319

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 92/270 (34%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +  +      +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLEEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280


>gi|240128505|ref|ZP_04741166.1| hypothetical protein NgonS_07716 [Neisseria gonorrhoeae SK-93-1035]
 gi|268686894|ref|ZP_06153756.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627178|gb|EEZ59578.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 319

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV   
Sbjct: 30  NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPGFPEEVLP- 86

Query: 74  SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 + I + +V         +         +     R  ++   AK +  T I   H
Sbjct: 87  -TYLESIGIPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185
             DD L T+++         G  L  M   ++ D    I  RP    + +D+  +   + 
Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
                 P N        +R  +   +RD D          F  L+  V + +A       
Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258

Query: 243 TVHMRSIIAISQDILNIDSTLL 264
               R         L  DS  +
Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280


>gi|312795000|ref|YP_004027922.1| tRNA s2C32 biosynthesis protein TtcA [Burkholderia rhizoxinica HKI
           454]
 gi|312166775|emb|CBW73778.1| tRNA s2C32 biosynthesis protein TtcA [Burkholderia rhizoxinica HKI
           454]
          Length = 307

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 84/261 (32%), Gaps = 25/261 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V VSGG DS  LL  L  +  +R+       A+++D   +        +V  + 
Sbjct: 45  AGDKVMVCVSGGKDSYALLDILLRL-RERAPIDFDIVAVNLD-QKQPG---FPAHVLPEY 99

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +   +   V       +  +         +     R  ++   A  + AT I   H  D
Sbjct: 100 LAARGVPFHVENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRD 159

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISW 188
           D L+TV +         G  L GM   +  D    I  RP    +  D+  +   R    
Sbjct: 160 DILQTVLLNMF-----YGGKLKGMPPKLQSDDGKHIVIRPLAYVKEHDLEKYAQLREFPI 214

Query: 189 CEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTV 244
              P N        +R  ++  +++ D          F  L   V ++ +   +  +  +
Sbjct: 215 I--PCNLCGSQPNLKRAEMKMLLQEWDKRFPGRVDNMFSALADVVPSHLMDHRLFPFAEL 272

Query: 245 HMRSIIAISQDILNIDSTLLF 265
               +     DI   D     
Sbjct: 273 RATGVADPHGDIAFDDEPCAM 293


>gi|218188588|gb|EEC71015.1| hypothetical protein OsI_02708 [Oryza sativa Indica Group]
          Length = 361

 Score = 93.4 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 21/212 (9%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +  SGG DS  L   L  + + R    +    +SVD  +     D +  V
Sbjct: 60  NLFKPGDRVAIGASGGKDSTVLAYVLSEL-NHRHKYCLDLFLLSVDEGITGYRDDSLETV 118

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   ++S+K+           +             R   +   A  +    I
Sbjct: 119 KRNEIQYGLPLKIISYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKI 178

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR--SF 180
           +T H  DD  ETV +   R    +    + +  T   D  +   +PF     ++I    +
Sbjct: 179 VTGHNADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVIYPY 236

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
               +I  C    N    + R   R F++D++
Sbjct: 237 YAISHIFSCIYSPNA---Y-RGFAREFIKDLE 264


>gi|227326371|ref|ZP_03830395.1| C32 tRNA thiolase [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 311

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V       + + + +V        K+  P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPQYLDSIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTMFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   R       P N        +R  ++  +RD D          F  ++  V + +A
Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   L
Sbjct: 256 DHALFDFKGIRHGSDVVDGGDLAFDREEL 284


>gi|218709460|ref|YP_002417081.1| hypothetical protein VS_1469 [Vibrio splendidus LGP32]
 gi|218322479|emb|CAV18636.1| Hypothetical protein VS_1469 [Vibrio splendidus LGP32]
          Length = 301

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 23/234 (9%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L  +   R    IKF  ++V+  L +       ++
Sbjct: 36  NMIEENDVVMACISGGKDSFAMLDILLRL---REAAPIKFDVVAVN--LDQKQPGFPEHI 90

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT I   
Sbjct: 91  LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 150

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR  D+  +    +
Sbjct: 151 HHLDDIVETMFLNMFHGARLKAM----PPKLRSDDGRNVVIRPLTYCRETDLIQYAEHLD 206

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
                 P N     +  +R  ++  + D D        K F+ ++    + +A 
Sbjct: 207 FPII--PCNLCGSQENLQRQNIKAMLIDWDKQTPGRVEKIFKSIQNVSPSQLAD 258


>gi|198283257|ref|YP_002219578.1| PP-loop domain-containing protein [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198247778|gb|ACH83371.1| PP-loop domain protein [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 256

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 64/185 (34%), Gaps = 16/185 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71
            R +     +L+ +SGG DS+ LL  L ++           +  +VD      + D + +
Sbjct: 25  FRMIQPGDRVLLGLSGGKDSLTLLHLLRAMQRQSPVP-FDLAVATVD----PMSPDYDPQ 79

Query: 72  YVSDVCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIMTA 125
            +      L I + +      +       +    +     R  ++   A+     ++   
Sbjct: 80  PLVPYLRELGIPYFLERQNIYERAQKHLLRPSYCSFCARMRRGVLYRCARREGYQVLALG 139

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DD  E+ +M    +   +    +      + + +L + RP + CR    R F  ++ 
Sbjct: 140 QHLDDFAESFFMSMFYNGELR----TMKAHYRVREGDLRVIRPLVYCRERQTRQFATEQA 195

Query: 186 ISWCE 190
           +    
Sbjct: 196 LPVIH 200


>gi|291541683|emb|CBL14793.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus bromii L2-63]
          Length = 382

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 23/229 (10%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM +      +     F   +   + +D       +D +   
Sbjct: 133 KLVEPNDKIAVCISGGKDSMLMAKLFQELKRHNKFP-FELVFLVMDPGYSVENRDVIE-- 189

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                RL I  +V                       R   + + AK +    I   H +D
Sbjct: 190 -SNARRLNIPITVFETDIFNSVYNVDKYPCYLCARMRRGYLYKKAKQLGCNKIALGHHYD 248

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        + M       +  Y+  + + RP    R  +I+ +     +++ 
Sbjct: 249 DVIETILMGMLYGGQVQTM--MPKLHSTNYE-GMELIRPLYLVREAEIKHWRDYNKLNFI 305

Query: 190 EDPS-----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +              N++   +R  +++ + ++      ++   F  + 
Sbjct: 306 QCACRFTDTCTTCSPNSNTGSKRQEIKQLIANLKKINPQIESNIFHSVE 354


>gi|209695076|ref|YP_002263005.1| hypothetical protein VSAL_I1573 [Aliivibrio salmonicida LFI1238]
 gi|254789866|sp|B6ELU0|TTCA_ALISL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|208009028|emb|CAQ79258.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 307

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 86/267 (32%), Gaps = 42/267 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              I+V +SGG DS  +L  L  +   +    I F  I+V+          H L E    
Sbjct: 36  GDRIMVCLSGGKDSFTMLDILIGL---KKSAPISFDLIAVNLDQKQPGFPTHILPE---- 88

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATL 121
                      L + + VV                   +     R  ++   AK + AT 
Sbjct: 89  -------YLDTLGVEYRVVEEDTYSIVQDKLIEGKTTCSLCSRLRRGILYRTAKELGATK 141

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSF 180
           I   H  DD LET+++         G  L GM   ++ D     + RP   CR +DI  +
Sbjct: 142 IALGHHRDDILETMFLNMF-----YGGKLKGMPPKLVSDNGEHVVIRPLAYCREKDIIKY 196

Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
               +      P N        +R  +++ +   D          F  ++  V + +A  
Sbjct: 197 ADLADYPII--PCNLCGSQPNMQRQNIKQMLNTWDTQFPGRIESMFTAMQNVVPSHLADF 254

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264
                    R    I+   +  D   +
Sbjct: 255 NTFDFKSINRDSGVINGGDIGFDKEEM 281


>gi|325132533|gb|EGC55226.1| PP-loop family protein [Neisseria meningitidis M6190]
          Length = 319

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV       
Sbjct: 34  PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V         +         +     R  ++   AK +  T I   H  DD
Sbjct: 90  ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 ILATMFLNMF-----YGGKLKAMPPKLVSDNGAHIVIRPLAYVKEKDLIKYAELKQFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   +RD D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLE 262

Query: 247 RSIIAISQDILNIDSTLL 264
           R         L  DS  +
Sbjct: 263 RGQTLKHGGDLAFDSEKM 280


>gi|218263812|ref|ZP_03477788.1| hypothetical protein PRABACTJOHN_03478 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222485|gb|EEC95135.1| hypothetical protein PRABACTJOHN_03478 [Parabacteroides johnsonii
           DSM 18315]
          Length = 251

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 18/194 (9%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F    E V+  +     +V    IL+ +SGG DS+ L+  L    S     + +     
Sbjct: 10  LFRKVEEKVKKAIFEYGLIVDGDRILIGLSGGKDSLALVDLLGR-RSKIFRPRFEVVVTH 68

Query: 58  V---DHCLRETAKDEVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREARYALIS 111
           +   +   R     ++ Y+        +   V       ++  +          R   + 
Sbjct: 69  IVMSNIPYRS----DISYLKSRTDEYGLPFFVHETSFDASTDTRKSPCFLCSWTRRKALF 124

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + AK      I   H  DD LET+ M        +G   +      +   ++ I RP   
Sbjct: 125 DIAKKHGCNKIALGHHQDDILETLLMNMI----HQGAIGTMPPRLKMDKFDMEIIRPMCL 180

Query: 172 CRREDIRSFLLQRN 185
              +D+      R 
Sbjct: 181 VEEKDLTRIAAWRG 194


>gi|159115787|ref|XP_001708116.1| ATPase of the PP-loop superfamily implicated in cell cycle control,
           putative [Giardia lamblia ATCC 50803]
 gi|157436225|gb|EDO80442.1| ATPase of the PP-loop superfamily implicated in cell cycle control,
           putative [Giardia lamblia ATCC 50803]
          Length = 351

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 102/302 (33%), Gaps = 57/302 (18%)

Query: 2   FLSPIE-SVRFFV--RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRS--FGKIKFSA 55
           FL  IE  V+  V   SLV P   I + VSGG DS  +L  LH++       +  ++F  
Sbjct: 27  FLRAIEDEVQRTVEMHSLVRPGESIALGVSGGKDSSVMLHILHTLRLRCQDVYDGVRFVM 86

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------------------- 96
           ++V+  ++    + +  +  +  +      +V ++    +T                   
Sbjct: 87  VAVNEGIQGYRGESLACLQRLHKKYPYELEIVGFEERYGRTLDQLVNTVNGNSCTDTFAP 146

Query: 97  ---------------------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                                   +     R   +S  +     T + T H  DD  ETV
Sbjct: 147 LKADLEDVNDTGRPQPTAKTATACSFCGILRRNSLSYGSLQTQCTKVATGHNADDNAETV 206

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISWCEDPS 193
            +   R  A K +     C   L DLN  ++R  P     + DI  +   + + +     
Sbjct: 207 LLNLIRGDAAKLV----RCSEPLSDLNQGVARIKPLCNIAQRDIVIYAHLQRLDYFSVEC 262

Query: 194 NTDDRFERVRVRRFV-----RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
                  R + R F+     R     A    ++  + LR+K  +    L   +L    +S
Sbjct: 263 PYATTALRGKPRSFLTNLCTRPAYSDAALRIIRSTRKLRLKTTHETQKLTSLHLCPSCQS 322

Query: 249 II 250
            +
Sbjct: 323 PV 324


>gi|261400644|ref|ZP_05986769.1| PP-loop family protein [Neisseria lactamica ATCC 23970]
 gi|269209551|gb|EEZ76006.1| PP-loop family protein [Neisseria lactamica ATCC 23970]
          Length = 319

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILLRLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFVGLERGQTLKHGGDLAFDSEKM 280


>gi|261380133|ref|ZP_05984706.1| PP-loop family protein [Neisseria subflava NJ9703]
 gi|284796970|gb|EFC52317.1| PP-loop family protein [Neisseria subflava NJ9703]
          Length = 319

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280


>gi|261379094|ref|ZP_05983667.1| PP-loop family protein [Neisseria cinerea ATCC 14685]
 gi|269144475|gb|EEZ70893.1| PP-loop family protein [Neisseria cinerea ATCC 14685]
          Length = 319

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280


>gi|254672452|emb|CBA05859.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|325128312|gb|EGC51196.1| PP-loop family protein [Neisseria meningitidis N1568]
          Length = 319

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280


>gi|126465307|ref|YP_001040416.1| PP-loop domain-containing protein [Staphylothermus marinus F1]
 gi|126014130|gb|ABN69508.1| PP-loop domain protein [Staphylothermus marinus F1]
          Length = 310

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 20/186 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+ +SGG DS+ L   L  +     F   K     ++  + E +K  V  V  + 
Sbjct: 33  RGDRVLLGLSGGKDSVVLAYILSKLRETIGF---KLYLTHLNLGIGEYSKKTVEIVRKIS 89

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALISEHAKTINATLIMTAHT 127
            ++     ++  +          A +  R            L++  A  + A  I T H 
Sbjct: 90  EKINAPLIILDLREILSIGIPELALKTRRPPCSVCGVVKRYLLNALAVELKADSIATGHN 149

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---SRPFLRCRREDIRSFLLQR 184
            DD + T  +   R++  + +         +     ++    +P      EDI+ +    
Sbjct: 150 LDDMV-TFIL---REFLVQNLEQIPKLAPRIEGAEDYLATKIKPLYETYEEDIKKYAELN 205

Query: 185 NISWCE 190
           NI + E
Sbjct: 206 NIDYVE 211


>gi|258405487|ref|YP_003198229.1| PP-loop domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257797714|gb|ACV68651.1| PP-loop domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 299

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 24/196 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+  R F         ILVAVSGG DS+ LL  L  +             + VD  + 
Sbjct: 36  RAIKEERLFT----PEDRILVAVSGGKDSLALLWQLRDL-------GYNVHGLHVDLGIP 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHA 114
           +++      ++  C +  I   +VS +           +    + +   + +    + +A
Sbjct: 85  DSSDRAKTAIAAFCDQQAIPLHIVSTEEAGVAIPDLAERIDQPVCSFCGKIKRHFFNTYA 144

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCR 173
                 ++ T H  DD++  ++  +      K   L+     +  D       +P  R  
Sbjct: 145 VEHGFNVLATGHNLDDEVSRLFANTL---GWKTDYLATQGPLLPADNGFARKVKPLYRHS 201

Query: 174 REDIRSFLLQRNISWC 189
             +  +F   + I   
Sbjct: 202 EFETAAFCFLKGIEHV 217


>gi|260440230|ref|ZP_05794046.1| UPF0021 protein [Neisseria gonorrhoeae DGI2]
 gi|291043526|ref|ZP_06569242.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria
           gonorrhoeae DGI2]
 gi|291011989|gb|EFE03978.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria
           gonorrhoeae DGI2]
          Length = 319

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV   
Sbjct: 30  NMIEPGDKIMVCLSGGKDSYALLDILRRLQATAPI-DFELVAVNLD-QKQPGFPEEVLP- 86

Query: 74  SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 + + + +V         +         +     R  ++   AK +  T I   H
Sbjct: 87  -TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185
             DD L T+++         G  L  M   ++ D    I  RP    + +D+  +   + 
Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
                 P N        +R  +   +RD D          F  L+  V + +A       
Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258

Query: 243 TVHMRSIIAISQDILNIDSTLL 264
               R         L  DS  +
Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280


>gi|238919821|ref|YP_002933336.1| C32 tRNA thiolase [Edwardsiella ictaluri 93-146]
 gi|238869390|gb|ACR69101.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 332

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 96/267 (35%), Gaps = 19/267 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     ++V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 49  EAIADF-NMIEEGDRVMVCLSGGKDSYTMLEILRNLQQSAPV-DFTLVAVNLD-QKQPGF 105

Query: 67  KDEV--RYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            + V   Y+ +     RI       +V  K  + +T   +     R  ++   A  ++  
Sbjct: 106 PETVLPAYLENQGIEYRIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTANELHCN 164

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I   H  DD LET+++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 165 KIALGHHRDDMLETLFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 220

Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
              +       P N        +R  ++  +RD D          F+ ++  V + +A  
Sbjct: 221 AAAKAFPII--PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRAMQNVVPSHLADG 278

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264
                   ++    I    L  D  ++
Sbjct: 279 ALFDFKGLLQGGEIIDGGDLAFDRQII 305


>gi|121634977|ref|YP_975222.1| hypothetical protein NMC1192 [Neisseria meningitidis FAM18]
 gi|205830605|sp|A1KU93|TTCA_NEIMF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|120866683|emb|CAM10435.1| hypothetical protein NMC1192 [Neisseria meningitidis FAM18]
 gi|325138307|gb|EGC60876.1| PP-loop family protein [Neisseria meningitidis ES14902]
          Length = 319

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV       
Sbjct: 34  PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V         +         +     R  ++   AK +  T I   H  DD
Sbjct: 90  ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 ILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   +RD D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLE 262

Query: 247 RSIIAISQDILNIDSTLL 264
           R         L  DS  +
Sbjct: 263 RGQTLKHGGDLAFDSEKM 280


>gi|84385469|ref|ZP_00988500.1| putative ATPase [Vibrio splendidus 12B01]
 gi|84379449|gb|EAP96301.1| putative ATPase [Vibrio splendidus 12B01]
          Length = 297

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 23/234 (9%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L  +   R    IKF  ++V+  L +       ++
Sbjct: 32  NMIEENDVVMACISGGKDSFAMLDILLRL---REAAPIKFDVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT I   
Sbjct: 87  LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR  D+  +   + 
Sbjct: 147 HHLDDIVETMFLNMFHGARLKAM----PPKLRSDDGRNVVIRPLTYCRETDLIKYAEHKE 202

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
                 P N     +  +R  ++  + D D        K F+ ++    + +A 
Sbjct: 203 FPII--PCNLCGSQENLQRQNIKAMLIDWDKQTPGRVEKVFKSIQNVSPSQLAD 254


>gi|319410531|emb|CBY90896.1| putative ATPase [Neisseria meningitidis WUE 2594]
          Length = 319

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFQLVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280


>gi|224023947|ref|ZP_03642313.1| hypothetical protein BACCOPRO_00664 [Bacteroides coprophilus DSM
           18228]
 gi|224017169|gb|EEF75181.1| hypothetical protein BACCOPRO_00664 [Bacteroides coprophilus DSM
           18228]
          Length = 252

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 76/227 (33%), Gaps = 26/227 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEV 70
           R +     ILV +SGG DS+  L+ L +  S     K    A  V   +  +   +    
Sbjct: 26  RLIEEGDRILVGLSGGKDSLA-LLELLARRSRIYKPKFSVVAAHVVMKN--IAYESDQ-- 80

Query: 71  RYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            Y+ +    L + +     +   ++  +          R   +   AK      I   H 
Sbjct: 81  TYLREYAESLGVPYVCYETEFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHH 140

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL------ 181
            DD LET+ M        +G   +     ++   ++ I RP       D++         
Sbjct: 141 MDDILETLLMNMT----FQGAFSTMPPRLVMRKFDMTIIRPMCLVHEADLKEMAALRGFR 196

Query: 182 -LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              +N  + +D   +D +     V   +  ++  A Y       +++
Sbjct: 197 KQVKNCPYEKDSHRSDMK----EVLARLEAMNPEARYSLWGSMSNIQ 239


>gi|255262373|ref|ZP_05341715.1| PP-loop domain containing protein [Thalassiobium sp. R2A62]
 gi|255104708|gb|EET47382.1| PP-loop domain containing protein [Thalassiobium sp. R2A62]
          Length = 290

 Score = 93.4 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 93/258 (36%), Gaps = 19/258 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V      A  LV +SGG DS  LL  L+ +   R    +   A ++D   +         
Sbjct: 42  VDQKSRNAKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLVACNLD---QGQPGFPATV 97

Query: 73  VSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + +   ++ + H +       V            A     R A +   A+    + ++  
Sbjct: 98  LPEFLEKMGVPHRIEYQDTYSVVMDKVPEGRTYCALCSRLRRANLYRIAREEGCSAVVLG 157

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQR 184
           H  DD LET +M            LS M   ++ D   L++ RP       D  +F    
Sbjct: 158 HHRDDMLETFFMNLFHGGR-----LSTMPPKLVNDEGDLFLFRPLAHVAEADCEAFARAM 212

Query: 185 NISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD-LRVKVNNAVAMLIPKYL 242
           N      D   + D  +R +V++ +   + ++   +   F+  +  + ++ +   +  ++
Sbjct: 213 NYPIIPCDLCGSQDGLQRQQVKQILDGWEKNSPGRRQVMFRALMNARPSHLLDPKLFDFV 272

Query: 243 TVHMRSIIAISQDILNID 260
            +   S    S DI ++ 
Sbjct: 273 GLQTSSDADNSTDIPDLS 290


>gi|325130372|gb|EGC53138.1| PP-loop family protein [Neisseria meningitidis OX99.30304]
          Length = 319

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280


>gi|261252977|ref|ZP_05945550.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio orientalis CIP
           102891]
 gi|260936368|gb|EEX92357.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio orientalis CIP
           102891]
          Length = 297

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             D    L I + +V                         R   +   A+ I AT +   
Sbjct: 87  LPDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHLDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKE 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|187927170|ref|YP_001897657.1| C32 tRNA thiolase [Ralstonia pickettii 12J]
 gi|309780128|ref|ZP_07674880.1| MesJ protein [Ralstonia sp. 5_7_47FAA]
 gi|254790135|sp|B2UD46|TTCA_RALPJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|187724060|gb|ACD25225.1| PP-loop domain protein [Ralstonia pickettii 12J]
 gi|308921160|gb|EFP66805.1| MesJ protein [Ralstonia sp. 5_7_47FAA]
          Length = 315

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 22/247 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV +SGG DS  +L  L ++   R+    K  A+++D   +    +EV    +   +L 
Sbjct: 34  ILVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEEVLP--NYLKKLG 89

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +V                   +     R  +I   AK + A  I   H  DD + T
Sbjct: 90  VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++        K      M   +  D    I  RP   C  +DI S+           P 
Sbjct: 150 FFLNMFFGGKMKS-----MPPKLATDNGDHIVIRPLAYCAEKDIASYARAMEFPII--PC 202

Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N     +  +R +V+  + + +          F  LR  V + +A             + 
Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQTPGRIDNIFASLRNVVPSHLADTDLFDFNGLTTGLA 262

Query: 251 AISQDIL 257
            I +D L
Sbjct: 263 KIGEDAL 269


>gi|261211593|ref|ZP_05925880.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC341]
 gi|260838943|gb|EEX65575.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC341]
          Length = 310

 Score = 93.0 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 24/256 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLEILMSLQKSAPIS-FELIAVNLD-QKQPG---FPAHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIVEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R+    
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYADMRSYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V+  + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKLMLNDWDKRFPGRIETMFRAMQNVVPSHLADFSLFDFKSID 267

Query: 247 RSIIAISQDILNIDST 262
           ++   I+   +  D  
Sbjct: 268 KNSGIINGGDIGFDKE 283


>gi|298368800|ref|ZP_06980118.1| PP-loop family protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282803|gb|EFI24290.1| PP-loop family protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 319

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADPELFDFVGLERGQALKHGGDLAFDSEKM 280


>gi|240115957|ref|ZP_04730019.1| UPF0021 protein [Neisseria gonorrhoeae PID18]
 gi|268601622|ref|ZP_06135789.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268585753|gb|EEZ50429.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
          Length = 319

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV   
Sbjct: 30  NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPGFPEEVLP- 86

Query: 74  SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 + + + +V         +         +     R  ++   AK +  T I   H
Sbjct: 87  -TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185
             DD L T+++         G  L  M   ++ D    I  RP    + +D+  +   + 
Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
                 P N        +R  +   +RD D          F  L+  V + +A       
Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258

Query: 243 TVHMRSIIAISQDILNIDSTLL 264
               R         L  DS  +
Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280


>gi|194098942|ref|YP_002002007.1| UPF0021 protein [Neisseria gonorrhoeae NCCP11945]
 gi|239999222|ref|ZP_04719146.1| UPF0021 protein [Neisseria gonorrhoeae 35/02]
 gi|240013870|ref|ZP_04720783.1| UPF0021 protein [Neisseria gonorrhoeae DGI18]
 gi|240016313|ref|ZP_04722853.1| UPF0021 protein [Neisseria gonorrhoeae FA6140]
 gi|240113197|ref|ZP_04727687.1| UPF0021 protein [Neisseria gonorrhoeae MS11]
 gi|240121440|ref|ZP_04734402.1| UPF0021 protein [Neisseria gonorrhoeae PID24-1]
 gi|240125992|ref|ZP_04738878.1| UPF0021 protein [Neisseria gonorrhoeae SK-92-679]
 gi|254493986|ref|ZP_05107157.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268595046|ref|ZP_06129213.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria
           gonorrhoeae 35/02]
 gi|268599277|ref|ZP_06133444.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684584|ref|ZP_06151446.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|293398841|ref|ZP_06643006.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria
           gonorrhoeae F62]
 gi|254790133|sp|B4RMM2|TTCA_NEIG2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|193934232|gb|ACF30056.1| UPF0021 protein [Neisseria gonorrhoeae NCCP11945]
 gi|226513026|gb|EEH62371.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548435|gb|EEZ43853.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria
           gonorrhoeae 35/02]
 gi|268583408|gb|EEZ48084.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624868|gb|EEZ57268.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|291610255|gb|EFF39365.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria
           gonorrhoeae F62]
 gi|317164507|gb|ADV08048.1| UPF0021 protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 319

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV   
Sbjct: 30  NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPGFPEEVLP- 86

Query: 74  SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 + + + +V         +         +     R  ++   AK +  T I   H
Sbjct: 87  -TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185
             DD L T+++         G  L  M   ++ D    I  RP    + +D+  +   + 
Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
                 P N        +R  +   +RD D          F  L+  V + +A       
Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258

Query: 243 TVHMRSIIAISQDILNIDSTLL 264
               R         L  DS  +
Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280


>gi|59800981|ref|YP_207693.1| hypothetical protein NGO0547 [Neisseria gonorrhoeae FA 1090]
 gi|240080432|ref|ZP_04724975.1| hypothetical protein NgonF_03847 [Neisseria gonorrhoeae FA19]
 gi|240118254|ref|ZP_04732316.1| hypothetical protein NgonPID_07301 [Neisseria gonorrhoeae PID1]
 gi|240123802|ref|ZP_04736758.1| hypothetical protein NgonP_07664 [Neisseria gonorrhoeae PID332]
 gi|268596574|ref|ZP_06130741.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria
           gonorrhoeae FA19]
 gi|268603963|ref|ZP_06138130.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268682426|ref|ZP_06149288.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|75356195|sp|Q5F956|TTCA_NEIG1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|59717876|gb|AAW89281.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|268550362|gb|EEZ45381.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria
           gonorrhoeae FA19]
 gi|268588094|gb|EEZ52770.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268622710|gb|EEZ55110.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 319

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 87/262 (33%), Gaps = 23/262 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV   
Sbjct: 30  NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFELVAVNLD-QKQPGFPEEVLP- 86

Query: 74  SDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 + + + +V         +         +     R  ++   AK +  T I   H
Sbjct: 87  -TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGH 145

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185
             DD L T+++         G  L  M   ++ D    I  RP    + +D+  +   + 
Sbjct: 146 HRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQ 200

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
                 P N        +R  +   +RD D          F  L+  V + +A       
Sbjct: 201 FPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDF 258

Query: 243 TVHMRSIIAISQDILNIDSTLL 264
               R         L  DS  +
Sbjct: 259 AGLERGQNLKHGGDLAFDSEKM 280


>gi|289522366|ref|ZP_06439220.1| Sua5/YciO/YrdC family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504202|gb|EFD25366.1| Sua5/YciO/YrdC family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 238

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 75/218 (34%), Gaps = 15/218 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVC 77
             ++LV +SGG DS  LLIAL  +    S  +    A+ VD     T    +   + + C
Sbjct: 27  GDNVLVGLSGGKDSSLLLIALKHLQR-VSPIRFNIEAMIVD----PTGGQFDPAGLKEFC 81

Query: 78  SRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             L +  +     +      + +    +     R  ++S  AK      I   H   D  
Sbjct: 82  ESLDVPFTHYAYPIFEIIKIRREKSPCSFCANMRRGILSGIAKDRGFRKIALGHHLTDAT 141

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            T+ +         G   +    T       W+ RP +    E + S   + ++      
Sbjct: 142 VTLMLNIF----FSGRLHTLQPKTWQSRTQTWVIRPLIFLPEETLISAASEMDLPERGPK 197

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
               D  +R R+   +++I   A   +    + LR  +
Sbjct: 198 CPYGDDTKRKRINEILKNILEEAPQGEYSTLRALRKTL 235


>gi|220905422|ref|YP_002480734.1| PP-loop domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869721|gb|ACL50056.1| PP-loop domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 264

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 59/181 (32%), Gaps = 15/181 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     + VA SGG DS  LL  L  +       + +  A+ ++      +      +  
Sbjct: 27  LWPGCRVGVAASGGVDSFVLLKTLK-IRQGIVPFRFEIMALHLNPGFDGQSH---AALLP 82

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------RYALISEHAKTINATLIMTAHTF 128
             +   I   V    +           R A       R   + E       T +   H  
Sbjct: 83  WLAAHGIPAHVEVTSHGPDAHSEKNLRRSACFRCAWLRRKRLFELCSQYGLTHLALGHNA 142

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D +ET +M   R+    GM +    +   +D  L + RP +   ++ IR    Q  +  
Sbjct: 143 EDLVETFFMNICRNGRVDGMSM----NEPFFDGKLRLIRPLMLVEKKYIRQAARQWGLPI 198

Query: 189 C 189
            
Sbjct: 199 W 199


>gi|312881636|ref|ZP_07741414.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309370699|gb|EFP98173.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 297

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFDVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT +   
Sbjct: 87  LPEYFESLDIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+ ++   + 
Sbjct: 147 HHMDDMVETLFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLITYAEHKQ 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|319638342|ref|ZP_07993105.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria mucosa
           C102]
 gi|317400615|gb|EFV81273.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Neisseria mucosa
           C102]
          Length = 319

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFVGLERGQNLKHGGDLAFDSEKM 280


>gi|308389377|gb|ADO31697.1| hypothetical protein NMBB_1381 [Neisseria meningitidis alpha710]
          Length = 319

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV       
Sbjct: 34  PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V         +         +     R  ++   AK +  T I   H  DD
Sbjct: 90  ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   +RD D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLE 262

Query: 247 RSIIAISQDILNIDSTLL 264
           R         L  DS  +
Sbjct: 263 RGQTLKHGGDLAFDSEKM 280


>gi|145337616|ref|NP_177744.2| ATP binding [Arabidopsis thaliana]
 gi|332197684|gb|AEE35805.1| 2-thiocytidine tRNA biosynthesis protein, TtcA [Arabidopsis
           thaliana]
          Length = 332

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 14/199 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I  V    R   +   + +  SGG DS  L   L  + + R    +    +S+D  
Sbjct: 20  FEEEIHQVIVGNRLFKFGERVAIGASGGKDSSVLAYVLSEL-NRRHSYGLDLFLLSIDEG 78

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V     +  +   +VS+K+                         R   +
Sbjct: 79  ITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 138

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              A  +    ++T H  DD  ETV +   R    +         T   D  +   +PF 
Sbjct: 139 DRGAALLKVDKLVTGHNADDIAETVVLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 196

Query: 171 RCRREDIRSFLLQRNISWC 189
               ++I  +   + + + 
Sbjct: 197 YTYEKEIVMYAYFKKLDYF 215


>gi|290462133|gb|ADD24114.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Lepeophtheirus
           salmonis]
          Length = 413

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 21/231 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSV---LSDRSFGKIKFSAISV 58
           F   +E++  F   +     +LV +SGG DS+ LL  L        + +  +    A++V
Sbjct: 156 FKPFLEAMEQF-SMIKNGDRVLVCLSGGKDSLSLLHTLRQYRFYAKETNGIEFDLGAVTV 214

Query: 59  DHCLRETAKD-EVRYVSDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISE 112
           D      +   + R +      L I +     ++++       T + +     +   I  
Sbjct: 215 D----PGSDAYDPRPLIPYLEELDIHYLYEKQNIMAAALEADCTSICSYCSRMKRGRIYA 270

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+     ++      DD +E+  M    +   +    +   +  + + +L + RPF+  
Sbjct: 271 AARKEKYNVLAMGQHLDDLVESFIMSIFHNGRMR----TMKANYSVKEKDLRVIRPFVYV 326

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           R   +R F   + +     P N    FE  + R   + + L A  L   + 
Sbjct: 327 RESKLREFAQTKKLPII--PENCPACFESPKERHRTKQL-LAAQELLFPRL 374


>gi|256752672|ref|ZP_05493523.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748434|gb|EEU61487.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 298

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 67/214 (31%), Gaps = 24/214 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  +       + L     ++VA+SGG DS+     L  +  +     I          
Sbjct: 30  FMRQVAKTIEKYKMLPPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL-------G 82

Query: 62  LRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-- 117
           + E   +      V   C    I   +V+ K    +     A R+ R   I    K    
Sbjct: 83  IEENNFSSQSREVVESFCKENDIPLEIVNLKEKFGKGIPDVAKRQDRICAICGVTKRHLM 142

Query: 118 -------NATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPF 169
                   A  + T HT DD  + +     R D      G   + +   +       +P 
Sbjct: 143 NEYTLSVKADALATGHTLDDMAKLLLANLFRWDLHHLSKGTPVLPEESGFARK---IKPL 199

Query: 170 LRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201
                E+I +F    NI       P + + ++ R
Sbjct: 200 AFQAEEEIIAFAKLHNIKPVTAVCPYSREAKYTR 233


>gi|167038552|ref|YP_001666130.1| PP-loop domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116948|ref|YP_004187107.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166857386|gb|ABY95794.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319930039|gb|ADV80724.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 298

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 67/214 (31%), Gaps = 24/214 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  +       + L     ++VA+SGG DS+     L  +  +     I          
Sbjct: 30  FMRQVAKTIEKYKMLPPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL-------G 82

Query: 62  LRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-- 117
           + E   +      V   C    I   +V+ K    +     A R+ R   I    K    
Sbjct: 83  IEENNFSSQSREVVESFCKENDIPLEIVNLKEKFGKGIPDVAKRQDRICAICGVTKRHLM 142

Query: 118 -------NATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPF 169
                   A  + T HT DD  + +     R D      G   + +   +       +P 
Sbjct: 143 NEYTLSVKADALATGHTLDDMAKLLLANLFRWDLHHLSKGTPVLPEESGFARK---IKPL 199

Query: 170 LRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201
                E+I +F    NI       P + + ++ R
Sbjct: 200 AFQAEEEIIAFAKLHNIKPVTAVCPYSREAKYTR 233


>gi|325266520|ref|ZP_08133197.1| PP-loop family protein [Kingella denitrificans ATCC 33394]
 gi|324981963|gb|EGC17598.1| PP-loop family protein [Kingella denitrificans ATCC 33394]
          Length = 323

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 90/273 (32%), Gaps = 25/273 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +++  F + +     I+V +SGG DS  LL  L  + +       +  A+++D   +   
Sbjct: 32  DAINDF-QMIENGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG- 87

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
                +V  +  + + +   +V         +         +     R  ++   AK + 
Sbjct: 88  --FPEHVLPEYLTSIGVPFKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 145

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 146 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 200

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   ++D D          F  L+  V + +
Sbjct: 201 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLKDWDKRFPGRIESMFSALQNVVPSHL 258

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
           A           R         L  DS  + + 
Sbjct: 259 ADTELFDFAGLQRGQELKHGGDLAFDSETVSFA 291


>gi|330445966|ref|ZP_08309618.1| PP-loop family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490157|dbj|GAA04115.1| PP-loop family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 297

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEENDVVMACISGGKDSFAMLDILLNLQKA---APIKFDVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +  + L I + +V            +            R   +   A+ I AT I   
Sbjct: 87  LPEYFASLNIPYYIVDKDTYSVVKEKIEEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHLDDIVETLFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLAYCREKDLIKYAEHKE 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|91223706|ref|ZP_01258970.1| putative ATPase [Vibrio alginolyticus 12G01]
 gi|254229558|ref|ZP_04922971.1| pyridoxamine 5'-phosphate oxidase [Vibrio sp. Ex25]
 gi|262394248|ref|YP_003286102.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. Ex25]
 gi|91191198|gb|EAS77463.1| putative ATPase [Vibrio alginolyticus 12G01]
 gi|151937931|gb|EDN56776.1| pyridoxamine 5'-phosphate oxidase [Vibrio sp. Ex25]
 gi|262337842|gb|ACY51637.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. Ex25]
          Length = 297

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT +   
Sbjct: 87  LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   ++
Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKD 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|28898307|ref|NP_797912.1| C32 tRNA thiolase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361897|ref|ZP_05774904.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus K5030]
 gi|260878644|ref|ZP_05890999.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AN-5034]
 gi|260894889|ref|ZP_05903385.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus
           Peru-466]
 gi|260903361|ref|ZP_05911756.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AQ4037]
 gi|81727716|sp|Q87PG9|TTCA_VIBPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|28806524|dbj|BAC59796.1| putative ATPase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087852|gb|EFO37547.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus
           Peru-466]
 gi|308091172|gb|EFO40867.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AN-5034]
 gi|308108216|gb|EFO45756.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AQ4037]
 gi|308114527|gb|EFO52067.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus K5030]
 gi|328473686|gb|EGF44521.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio
           parahaemolyticus 10329]
          Length = 297

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT +   
Sbjct: 87  LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   ++
Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKD 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|291521355|emb|CBK79648.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Coprococcus catus GD/7]
          Length = 382

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 68/194 (35%), Gaps = 14/194 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +F    +++  +   L+ P   I V +SGG DSM +      +     F   +   + +D
Sbjct: 121 LFSKFAKAINTY--DLIQPGDKIAVCISGGKDSMLMAKLFQELKRHNKFP-FELVFLVMD 177

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAK 115
               E  +   + + +    + +  +V   +        Q          R   +   AK
Sbjct: 178 PGYSEVNR---KLIENNARIMGVPITVFESQIFEAVYDIQKSPCYLCARMRRGHLYNKAK 234

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    I   H +DD +ET+ M        + M       +  ++  + + RP    R E
Sbjct: 235 ELGCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSSNFE-GMELIRPMYLIREE 291

Query: 176 DIRSFLLQRNISWC 189
           DI+ +     + + 
Sbjct: 292 DIKQWRDLNGLHFI 305


>gi|118594050|ref|ZP_01551397.1| hypothetical protein MB2181_00240 [Methylophilales bacterium
           HTCC2181]
 gi|118439828|gb|EAV46455.1| hypothetical protein MB2181_00240 [Methylophilales bacterium
           HTCC2181]
          Length = 286

 Score = 93.0 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 80/228 (35%), Gaps = 20/228 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V VSGG DS  LL  L ++         +  A+++D   +    ++V    +   
Sbjct: 38  GDKVMVCVSGGKDSFTLLTILLALQKKAPI-NFEVIAMNLD-QKQPGFPEDVLP--NYFK 93

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  I   +V+                  +     R  +I + AK I A  I   H  +D 
Sbjct: 94  KYGIPFEIVNADTYSIVKEKIPEGKTTCSLCSRLRRGIIYKKAKAIGANKIALGHHKNDI 153

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++        K M    + D    D +  I RP   C  +DI ++    N      
Sbjct: 154 VETFFLNMFHGSKLKAMPPKLLSD----DKDNIIIRPLAFCEEKDIMTYANTMNFPII-- 207

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           P N     +  ER +++  + D D          F  +     + +A 
Sbjct: 208 PCNLCGSQENLERKKIKAMLFDWDKANPGRVNNIFGAISNIELSHLAD 255


>gi|261821855|ref|YP_003259961.1| C32 tRNA thiolase [Pectobacterium wasabiae WPP163]
 gi|261605868|gb|ACX88354.1| PP-loop domain protein [Pectobacterium wasabiae WPP163]
          Length = 311

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V       + + + +V        K+  P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPQYLDSIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   R       P N        +R  ++  +RD D          F  ++  V + +A
Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRHPGRIETMFSAMQNVVPSHLA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   L
Sbjct: 256 DHTLFDFKNIRHGSEVVDGGDLAFDREEL 284


>gi|325958096|ref|YP_004289562.1| hypothetical protein Metbo_0338 [Methanobacterium sp. AL-21]
 gi|325329528|gb|ADZ08590.1| protein of unknown function UPF0021 [Methanobacterium sp. AL-21]
          Length = 283

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 77/208 (37%), Gaps = 13/208 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA+SGG DS+  L  L  ++ +  F      A+S+D  +     + V      C  L 
Sbjct: 32  VVVALSGGKDSVLTLHILADLMGELEF---DLVAVSIDEGVAGYRSEGVEAARLNCESLG 88

Query: 82  IAHSVVSWKNSKPQT---------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           I     S+K+                       R  L+++ +  + A  + T H  DD++
Sbjct: 89  IKLVEGSFKDEFGFKLDDLHGMYQSSCIPCGVFRRQLLNKISHQLGADKLATGHNLDDEI 148

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ++  M   +    +        D I  D+   I +P  +   +D+  + +  NI      
Sbjct: 149 QSFLMSLAKAEIRRFYKFGPKLDKIHPDMVPRI-KPLWKTHEKDVGIWAVLNNIEVHFAE 207

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKM 220
                   R +++ ++  ++      K+
Sbjct: 208 CPYSATSLRSKIKGYLNQLEEKRPGTKL 235


>gi|323499029|ref|ZP_08104009.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio sinaloensis
           DSM 21326]
 gi|323315864|gb|EGA68895.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio sinaloensis
           DSM 21326]
          Length = 297

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             D    L I + +V                         R   +   A+ I AT +   
Sbjct: 87  LPDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHLDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKA 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|227111869|ref|ZP_03825525.1| C32 tRNA thiolase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 311

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V       + + + +V        K+  P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPQYLDSIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   R       P N        +R  ++  +RD D          F  ++  V + +A
Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   L
Sbjct: 256 DHALFDFKGIRHGSDVVDGGDLAFDREEL 284


>gi|67481529|ref|XP_656114.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56473279|gb|EAL50713.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 252

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 24/183 (13%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRY 72
               I++  SGG DS  L+  L ++  + +F  I   A+ V      + L      ++  
Sbjct: 35  PHDRIIIGFSGGKDSFLLVHVLSTLSKNVNFP-IDIVAVHVTNPQVGYQL------DLEQ 87

Query: 73  VSDVCSRLRIAHSVV--------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +C    +    +          +++   T       + R   + + AK    T I  
Sbjct: 88  SKTICESFGVPFISLQSEKMSESDIEDADKNTTFCLNCGKNRRRALLKFAKEHGFTSIAL 147

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ET+ M         G   +           +   RP +      I+ +    
Sbjct: 148 GHHMDDVAETLLMNQL----FCGCVATIPAQFTTEKYGIKFIRPLIEVPVVLIQEWTKYI 203

Query: 185 NIS 187
            + 
Sbjct: 204 ELP 206


>gi|218887382|ref|YP_002436703.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758336|gb|ACL09235.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 248

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 75/220 (34%), Gaps = 27/220 (12%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HC-------LRET 65
             A I VAVSGG DS  LL  L  +       + +  A+ V+     H        LR  
Sbjct: 29  PGARIGVAVSGGMDSWVLLQVLK-LRQRIVPFRFEIMALHVNPGFDPHNHAPLLPWLRAN 87

Query: 66  AKDEVRYVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                     V S + +  H  V+   +  +        + R   + E  K    T +  
Sbjct: 88  ---------GVASHIEVTDHGPVAHSPANLRNSPCFYCAKLRRTRLFELCKQYGLTHLAF 138

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD + T +M   +     GM +        +   L + RP +   +  I   + Q 
Sbjct: 139 GHNADDLVTTFFMNLVQTGRVDGMSM----KEAFFGGRLTVIRPMMLVEKPVIARAVKQW 194

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
           N+    +P  +     R  +   V+++   + + K   F 
Sbjct: 195 NLPVWTNPCPSAFDSRRSEMTDEVKELCKGSKFAKANIFN 234


>gi|156937300|ref|YP_001435096.1| PP-loop domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156566284|gb|ABU81689.1| PP-loop domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 304

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 73/218 (33%), Gaps = 35/218 (16%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH----CLRETAKDEVRYVSD 75
           + IL+AVSGG DS+ L+  +  +   +        A +V        R     E +    
Sbjct: 42  SKILLAVSGGKDSLVLMDVVAQLRDPK-----DLVAATVVEGAPGGYR---VKEAQVAKR 93

Query: 76  VCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
              +L I H  +++K           +K +          R   +   A+ + A ++ T 
Sbjct: 94  FAEKLGIKHITITFKELFGKSLEEMVAKGKLSPCTYCGVFRRRALEVLARRLGA-VVATG 152

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           HT DD+  T  +   R   +  + L+               +P  +    ++  +   + 
Sbjct: 153 HTLDDEAHTALLNLLRGSWDDLLRLNAKSR----------IKPLRKVYEREVSIYAYIKK 202

Query: 186 ISWCEDPSNTDDRF--ERVRVRRFVRDIDLHALYLKMK 221
             +  +      R    R R+R  + + +        K
Sbjct: 203 FPFQSEECPYIVRRPSLRGRLREELFEYERERPGTLFK 240


>gi|260889893|ref|ZP_05901156.1| PP-loop family protein [Leptotrichia hofstadii F0254]
 gi|260860499|gb|EEX74999.1| PP-loop family protein [Leptotrichia hofstadii F0254]
          Length = 285

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 14/188 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             ++++  F   +     I + VSGG DS+ L+     +  DR      F A+S++   R
Sbjct: 46  KFLKAINDF-DMIQDGDKIAIGVSGGKDSLLLVKLFQELKKDRR-KNFDFKAVSLNPGFR 103

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTIN 118
             +  +  +  +   +L I   +++       N K +        + R  ++    + + 
Sbjct: 104 -NSDLD-NF-KNNLDKLNIDCEIINTNIWEIANEKAKDYPCFLCAKMRRGILYTQVEELG 160

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +   H FDD +ET  +         G   +           L + RP +  +  DI 
Sbjct: 161 FNKLTLGHHFDDVIETTLINML----YAGTMKTMTPKVPSTSGKLELIRPLIYVKEADII 216

Query: 179 SFLLQRNI 186
            +     I
Sbjct: 217 DYTKTNGI 224


>gi|167579547|ref|ZP_02372421.1| PP-loop family family protein [Burkholderia thailandensis TXDOH]
          Length = 331

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 33/256 (12%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     + +   ++V +SGG DS  LL  L  +  +R+       A++
Sbjct: 44  LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDLVAVN 102

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +RD D        K+F   
Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWD--------KRFPGR 264

Query: 227 RVKVNNAVAMLIPKYL 242
              + NA+A ++P +L
Sbjct: 265 VDNMFNALANVVPSHL 280


>gi|305662530|ref|YP_003858818.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377099|gb|ADM26938.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
          Length = 319

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 96/271 (35%), Gaps = 32/271 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVS 74
           L +   ILV +SGG DS  L   L  +         K   + ++  +    ++E   ++ 
Sbjct: 49  LNHNDKILVGLSGGKDSYTLFKILLEI-----HDPAKIIGLMIEEGINGYNREEQYVFIK 103

Query: 75  DVCSRLRIAHSVVSWKNSKP---------------QTGLMAAAREARYALISEHAKTINA 119
           ++C    +       K                   +         AR  +++ +A+  N 
Sbjct: 104 NICKEFNVDCIKTDLKRELGYSVDDFMYLQHRKSLKFSACTYCGIARRRVLNYYARIYNV 163

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR- 178
             + T H  DD+++T  +   R    + + L  + +     L +   +P       +   
Sbjct: 164 DKVATGHNLDDEVQTYIINILRGDIMRLVQLHPLSEVHSVSL-VKRIKPLRIIYEYETAF 222

Query: 179 -SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            ++L   +    E P  +++   RVRVR  +  ++         ++  ++++    +  +
Sbjct: 223 FAYLEHYHFQETECPYISEEPTLRVRVRELLYSLE--------NRYPGIQLRFIEYIDKI 274

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
           +  Y+       I + + I   + T    LL
Sbjct: 275 LEPYVISSRYRNIELPRCINCGEPTSPNRLL 305


>gi|261392453|emb|CAX50002.1| putative ATPase [Neisseria meningitidis 8013]
          Length = 338

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV       
Sbjct: 34  PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V         +         +     R  ++   AK +  T I   H  DD
Sbjct: 90  ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 ILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   +RD D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262

Query: 247 RSIIAISQDILNIDSTLL 264
           R         L  DS  +
Sbjct: 263 RGQSLKHGGDLAFDSEKM 280


>gi|254373114|ref|ZP_04988603.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570841|gb|EDN36495.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 251

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +++ +SGG DS GLL  LH ++ D+++  I     ++D   +     +   +
Sbjct: 20  KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 L +++ +       V            +     R   I  +AK      I+  H
Sbjct: 76  RKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++++ M        +G   S     +  D    + RP +  +  D+  F  + N 
Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGKNTVIRPMVLVQERDLIEFAKEENF 191

Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
                P N     +  +R +V++ ++D+ L    +       L   +
Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236


>gi|115763392|ref|XP_793633.2| PREDICTED: similar to MGC107918 protein [Strongylocentrotus
           purpuratus]
 gi|115952047|ref|XP_001189910.1| PREDICTED: similar to MGC107918 protein [Strongylocentrotus
           purpuratus]
          Length = 270

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 16/198 (8%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86
           S G DS  L   L  +L+++    +    +SVD  +     D +  V     +  +   +
Sbjct: 19  STGRDSTVLAYVLK-LLNEKYDYGLDLVLLSVDEGITGYRDDSLETVKRNQQQYDLPLKI 77

Query: 87  VSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           VS++               +          R   +   A  +NA  I+T H  DD  ET+
Sbjct: 78  VSYEELYGWTMDSIVKQIGRKNNCTFCGVFRRQALDRGALLVNAGKIVTGHNADDIAETI 137

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            M   R    +   L    D I      L   +PF     ++I  +   + + +      
Sbjct: 138 LMNILRGDIAR---LRRCADIITGAEGALPRCKPFKYTYEKEIVMYAYFKKLDYFSTECI 194

Query: 195 TDDRFERVRVRRFVRDID 212
                 R   R +++D++
Sbjct: 195 YSPNAYRGYARAYLKDLE 212


>gi|83718777|ref|YP_440848.1| C32 tRNA thiolase [Burkholderia thailandensis E264]
 gi|167617641|ref|ZP_02386272.1| PP-loop family family protein [Burkholderia thailandensis Bt4]
 gi|257140495|ref|ZP_05588757.1| PP-loop family protein [Burkholderia thailandensis E264]
 gi|123538186|sp|Q2T1V1|TTCA_BURTA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|83652602|gb|ABC36665.1| PP-loop family family [Burkholderia thailandensis E264]
          Length = 331

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 33/256 (12%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     + +   ++V +SGG DS  LL  L  +  +R+       A++
Sbjct: 44  LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDLVAVN 102

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +RD D        K+F   
Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWD--------KRFPGR 264

Query: 227 RVKVNNAVAMLIPKYL 242
              + NA+A ++P +L
Sbjct: 265 VDNMFNALANVVPSHL 280


>gi|218768284|ref|YP_002342796.1| hypothetical protein NMA1465 [Neisseria meningitidis Z2491]
 gi|205830604|sp|A1IS67|TTCA_NEIMA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|121052292|emb|CAM08621.1| hypothetical protein NMA1465 [Neisseria meningitidis Z2491]
          Length = 319

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRRLQASAPI-DFQLVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFVGLERGQSLKHGGDLAFDSEKM 280


>gi|313887829|ref|ZP_07821509.1| PP-loop family protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846172|gb|EFR33553.1| PP-loop family protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 272

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 15/177 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I VA+SGG DS+ L   L  +         +   I++D       ++ + Y    C
Sbjct: 38  PGDKIAVAISGGKDSLTLAKLLQELKKHNKVP-FELEFIAMDPGYLPENRERLEYN---C 93

Query: 78  SRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            +L I   V                         R   +   A+ +    +   H FDD 
Sbjct: 94  EKLGIPVKVHDSDVFSVAEKLSSGGSTCYMCARMRRGNLYNRAQELGCNKLALGHHFDDV 153

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNIS 187
           +ETV +         G   + M      +   L + RP    R E I  F+    +S
Sbjct: 154 IETVLLNII----YAGDFKTMMPKLKSKNFEGLELIRPMYLVREEAIIRFMKSTGLS 206


>gi|163800908|ref|ZP_02194808.1| putative ATPase [Vibrio sp. AND4]
 gi|159175257|gb|EDP60054.1| putative ATPase [Vibrio sp. AND4]
          Length = 297

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             D    L I + +V                         R   +   A+ I AT +   
Sbjct: 87  LPDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKE 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|156974575|ref|YP_001445482.1| hypothetical protein VIBHAR_02293 [Vibrio harveyi ATCC BAA-1116]
 gi|269963076|ref|ZP_06177412.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|205830638|sp|A7N0R3|TTCA_VIBHB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|156526169|gb|ABU71255.1| hypothetical protein VIBHAR_02293 [Vibrio harveyi ATCC BAA-1116]
 gi|269832208|gb|EEZ86331.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 297

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             D    L I + +V                         R   +   A+ I AT +   
Sbjct: 87  LPDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKE 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|90021870|ref|YP_527697.1| C32 tRNA thiolase [Saccharophagus degradans 2-40]
 gi|123090396|sp|Q21IJ4|TTCA_SACD2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|89951470|gb|ABD81485.1| PP-loop [Saccharophagus degradans 2-40]
          Length = 310

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 78/228 (34%), Gaps = 20/228 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L  +        IKF  ++V+   ++        + +   
Sbjct: 36  GDKVMVCLSGGKDSYAMLDILMGLQKA---APIKFDIVAVN-MDQKQPGFPEHILPEYLD 91

Query: 79  RLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L I + +V          +              R   +   A+ I AT I   H  DD 
Sbjct: 92  SLGIEYHIVERDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAERIGATKIALGHHRDDI 151

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+++        K M    + D    D    I RP   C   D+  F  Q+       
Sbjct: 152 VETLFLNMFYGGRLKAMPPKLLAD----DKRNIIIRPLAYCVEADLEEFAKQKAFPII-- 205

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           P N     +  +R  +++ ++  +          F  L+    + +A 
Sbjct: 206 PCNLCGSQENLQRQAIKQMLQGWEKQFPGRIETIFSSLQRVSASQLAD 253


>gi|198274776|ref|ZP_03207308.1| hypothetical protein BACPLE_00935 [Bacteroides plebeius DSM 17135]
 gi|198272223|gb|EDY96492.1| hypothetical protein BACPLE_00935 [Bacteroides plebeius DSM 17135]
          Length = 254

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 74/222 (33%), Gaps = 26/222 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYVSD 75
              ILV +SGG DS+  L+ L +  S     K    A  V   +  +   +     Y+ +
Sbjct: 31  GDRILVGLSGGKDSLA-LLELLARRSRIYKPKFSVVAAHVVMKN--IAYESDQ--TYLRE 85

Query: 76  VCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               L + +     +   ++  +          R   +   AK      I   H  DD L
Sbjct: 86  YAESLGVPYVCYETEFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHHMDDIL 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL-------LQRN 185
           ET+ M        +G   +     ++   ++ I RP       D++            +N
Sbjct: 146 ETLLMNMT----FQGAFSTMPPRLVMRKFDMTIIRPMCLVHEADLKEMAALRGFRKQVKN 201

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             + +D   +D +     V   +  ++  A Y       +++
Sbjct: 202 CPYEKDSHRSDMK----EVLARLEAMNPEARYSLWGSMNNIQ 239


>gi|118581899|ref|YP_903149.1| C32 tRNA thiolase [Pelobacter propionicus DSM 2379]
 gi|205830608|sp|A1AUS1|TTCA_PELPD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|118504609|gb|ABL01092.1| PP-loop domain protein [Pelobacter propionicus DSM 2379]
          Length = 269

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 78/212 (36%), Gaps = 21/212 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V VSGG DS   L+ L   L  R+    +  A+ +D        D    V D  +
Sbjct: 45  GDRIAVGVSGGKDS-YTLLLLLEELRRRAPIDFQLVAVIIDSGYPGYRGD---IVRDYVT 100

Query: 79  RLRIA-------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L I        H  +  +  +P +   +     +   +   A ++    +   H  DD 
Sbjct: 101 SLGIPCHLETTTHYEIITEKRRPGSSYCSICARLKRGALYGLADSLGCNKLALGHHGDDF 160

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+ +      + K M  + + D    +    + RP +    E+I  F+ Q  +     
Sbjct: 161 IETLLLNQFFVGSLKAMSANMLAD----NGRTTVIRPLVYASEEEIVDFMGQVGLPVV-- 214

Query: 192 PSN----TDDRFERVRVRRFVRDIDLHALYLK 219
             N         +R R++  +++++    +++
Sbjct: 215 SCNCPVSDSTDLKRRRMKELLKELEQEIPHIR 246


>gi|294636268|ref|ZP_06714674.1| PP-loop family protein [Edwardsiella tarda ATCC 23685]
 gi|291090443|gb|EFE23004.1| PP-loop family protein [Edwardsiella tarda ATCC 23685]
          Length = 311

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 87/273 (31%), Gaps = 35/273 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET- 65
           E++  F   +     ++V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRVMVCLSGGKDSYTMLEILRNLQQSAPV-DFTLVAVNLD-QKQPGF 84

Query: 66  ------AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISE 112
                 A  + +          I + +V                   +     R  ++  
Sbjct: 85  PETVLPAYLDAQ---------GIEYRIVEEDTYGIVKEKIPEGKTTCSLCSRLRRGILYR 135

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  +N   I   H  DD LET+++        KGM    M D    D    + RP   C
Sbjct: 136 TATELNCNKIALGHHRDDMLETLFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYC 191

Query: 173 RREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           R +DI  F   +       P N        +R  ++  +RD D          F+ ++  
Sbjct: 192 REKDIERFASAKAFPII--PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFRAMQNV 249

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
           V + +A           +    I    L  D  
Sbjct: 250 VPSHLADGALFDFKSLQQGGEVIDGGDLAFDRQ 282


>gi|255065884|ref|ZP_05317739.1| PP-loop family protein [Neisseria sicca ATCC 29256]
 gi|255049795|gb|EET45259.1| PP-loop family protein [Neisseria sicca ATCC 29256]
          Length = 319

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADPELFDFVGLERGQTLKHGGDLAFDSEKM 280


>gi|261364926|ref|ZP_05977809.1| PP-loop family protein [Neisseria mucosa ATCC 25996]
 gi|288566711|gb|EFC88271.1| PP-loop family protein [Neisseria mucosa ATCC 25996]
          Length = 319

 Score = 92.7 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADPELFDFVGLERGQTLKHGGDLAFDSEKM 280


>gi|33598638|ref|NP_886281.1| hypothetical protein BPP4148 [Bordetella parapertussis 12822]
 gi|81426044|sp|Q7W398|TTCA_BORPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|33574767|emb|CAE39427.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 320

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 20/223 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ++V +SGG DS  LL  L S+     F   +  A+++D   +     E+       
Sbjct: 45  AGDKVMVCLSGGKDSYALLDILLSLQKRAPFA-FEIIAVNLD-QKQPGFPPEILP--GYL 100

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +   +       +  +       + +     R  ++   A  + AT I   H  DD
Sbjct: 101 RALGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDD 160

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T ++        KGM        +  D    + RP       D+ ++   +      
Sbjct: 161 ILGTFFLNLFYGGKAKGM----PPKLVSDDGRHTVIRPLAYVPESDLIAYAQFKQFPII- 215

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            P N     +  +R  V R +++ D          F  L   V
Sbjct: 216 -PCNLCGSQENLKRKEVGRMIQEWDRKHPGRSWNVFNALSRVV 257


>gi|197121365|ref|YP_002133316.1| PP-loop domain protein [Anaeromyxobacter sp. K]
 gi|254789868|sp|B4UF77|TTCA_ANASK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|196171214|gb|ACG72187.1| PP-loop domain protein [Anaeromyxobacter sp. K]
          Length = 291

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 87/270 (32%), Gaps = 20/270 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +  +  E++R F   +     I+VAVSGG DS  LL  L  +  +R+       A+++D 
Sbjct: 11  LLRATAEAIRDF-DLVSQGDRIMVAVSGGKDSYTLLHLLMRL-RERAPIDFDLVAVNLD- 67

Query: 61  CLRETAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEH 113
             +       + V D    + + +         V  +               R  ++   
Sbjct: 68  --QGQPGFPAQVVEDHLRSVGVPYRMLQRDTYSVVRRLVPEGKTTCPVCSRLRRGVLYNA 125

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  +  T I   H  DD +ET+ +         G   S        D    + RP     
Sbjct: 126 AVEMGCTKIALGHHRDDLVETLLL----SALYSGALKSMPPKLRSRDGRNVVVRPLCYAA 181

Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            ED+ +F           D   +     R RV+R + ++      +K      L   V  
Sbjct: 182 EEDVAAFAEAMRFPIVPCDLCGSQPNLRRKRVKRLLAELSAEHPAVKGNLLHALAHVVP- 240

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDST 262
             + L+ + L   +         +   D  
Sbjct: 241 --SHLLDRDLHRQLADATGRDPWLDAEDEE 268


>gi|288817937|ref|YP_003432284.1| ATPase, PP-loop superfamily [Hydrogenobacter thermophilus TK-6]
 gi|288787336|dbj|BAI69083.1| ATPase, PP-loop superfamily [Hydrogenobacter thermophilus TK-6]
 gi|308751535|gb|ADO45018.1| Rhodanese domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 440

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 21/202 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F++ +  V    R       + VAVSGG DS+ LL AL     ++        A  ++  
Sbjct: 59  FVNRVRRVVEEFRMFKPGERVAVAVSGGKDSVALLHALKKAFPEQ-----DIYAFYINLG 113

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-----------QTGLMAAAREARYALI 110
           ++  +    + V ++   + +   + + K  +            +  + +     +  + 
Sbjct: 114 IKYYSDHLEKKVIELAEMVGVPIEIYNLKEKEGYTIDDFLLTKYKNKMCSVCGLIKRNIF 173

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +  A  +NA  + T H  DD + T+ M        +G+         L        +P +
Sbjct: 174 TTLAVRVNADTVATGHNLDDTVSTM-MSLFFAGDFEGIARLKPVLKPLIKGQPRKIKPLI 232

Query: 171 RCRREDIRS--FLLQRNISWCE 190
                +I    ++    +   E
Sbjct: 233 TTP--EIEDLYYVALNELPVQE 252


>gi|220916067|ref|YP_002491371.1| PP-loop domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254789867|sp|B8JEH9|TTCA_ANAD2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|219953921|gb|ACL64305.1| PP-loop domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 291

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 87/270 (32%), Gaps = 20/270 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +  +  E++R F   +     I+VAVSGG DS  LL  L  +  +R+       A+++D 
Sbjct: 11  LLRATAEAIRDF-DLVSQGDRIMVAVSGGKDSYTLLHLLMRL-RERAPIDFDLVAVNLD- 67

Query: 61  CLRETAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEH 113
             +       + V D    + + +         V  +               R  ++   
Sbjct: 68  --QGQPGFPAQVVEDHLRSVGVPYRMLQRDTYSVVRRLVPEGKTTCPVCSRLRRGVLYNA 125

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  +  T I   H  DD +ET+ +         G   S        D    + RP     
Sbjct: 126 AVEMGCTKIALGHHRDDLVETLLL----SALYSGALKSMPPKLRSRDGRNVVVRPLCYAA 181

Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
            ED+ +F           D   +     R RV+R + ++      +K      L   V  
Sbjct: 182 EEDVAAFAEAMRFPIVPCDLCGSQPNLRRKRVKRLLAELSAEHPAVKGNLLHALAHVVP- 240

Query: 233 AVAMLIPKYLTVHMRSIIAISQDILNIDST 262
             + L+ + L   +         +   D  
Sbjct: 241 --SHLLDRDLHRQLADATGRDPWLDAEDEE 268


>gi|134283598|ref|ZP_01770297.1| PP-loop family protein [Burkholderia pseudomallei 305]
 gi|134245007|gb|EBA45102.1| PP-loop family protein [Burkholderia pseudomallei 305]
          Length = 331

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 32/282 (11%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     + +   ++V +SGG DS  LL  L  +  +R+       A++
Sbjct: 44  LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDIVAVN 102

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +RD D          F  L
Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 272

Query: 227 RVKVNNAVAML-------IPKYLTVHMRSIIAISQDILNIDS 261
              V + +          +           IA  +D    D+
Sbjct: 273 ANVVPSHLMDARLFPFAGLRATGEADPNGDIAFDEDPCGTDA 314


>gi|86170928|ref|XP_966113.1| PP-loop family protein, putative [Plasmodium falciparum 3D7]
 gi|46361078|emb|CAG25365.1| PP-loop family protein, putative [Plasmodium falciparum 3D7]
          Length = 482

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 12/140 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       I +AVSGG DS  L   L ++    ++   +   +++D  ++    D ++ V
Sbjct: 43  RMFEDNDKICIAVSGGKDSSVLAHVLVNLKKKYNY-NWELFLLAIDEGIKGYRDDSLKVV 101

Query: 74  SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINATLI 122
             +     +   ++ ++N              +          R     + A   NAT +
Sbjct: 102 YKLEKLYNLPLKILKFENLFSYTMDDVVKFIGKKNNCTVCGVFRRQSFEKGALLFNATKL 161

Query: 123 MTAHTFDDQLETVYMRSQRD 142
           +T H  DD  ET+ M   R 
Sbjct: 162 VTGHNADDLAETILMNMCRG 181


>gi|86145984|ref|ZP_01064311.1| putative ATPase [Vibrio sp. MED222]
 gi|85836189|gb|EAQ54320.1| putative ATPase [Vibrio sp. MED222]
          Length = 297

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 81/234 (34%), Gaps = 23/234 (9%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L  +   R    IKF  ++V+  L +       ++
Sbjct: 32  NMIEENDVVMACISGGKDSFAMLDILLRL---REAAPIKFDVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT I   
Sbjct: 87  LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR  D+  +    +
Sbjct: 147 HHLDDIVETMFLNMFHGARLKAM----PPKLRSDDGRNVVIRPLTYCRETDLIQYAEHLD 202

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
                 P N     +  +R  ++  + D D        K F+ ++    + +A 
Sbjct: 203 FPII--PCNLCGSQENLQRQNIKAMLIDWDKKTPGRVEKIFKSIQNVSPSQLAD 254


>gi|149191306|ref|ZP_01869560.1| putative ATPase [Vibrio shilonii AK1]
 gi|148834842|gb|EDL51825.1| putative ATPase [Vibrio shilonii AK1]
          Length = 297

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEENDVVMACISGGKDSFAMLDILLNLQKA---APIKFDVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             D    L I + +V                         R   +   A+ I AT I   
Sbjct: 87  LPDYFETLNIPYYIVDKDTYSVVKEKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHLDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIRYAEHKE 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|118497755|ref|YP_898805.1| ATPase [Francisella tularensis subsp. novicida U112]
 gi|194323727|ref|ZP_03057503.1| hypothetical protein FTE_0562 [Francisella tularensis subsp.
           novicida FTE]
 gi|208779820|ref|ZP_03247164.1| hypothetical protein FTG_0565 [Francisella novicida FTG]
 gi|254374565|ref|ZP_04990046.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|205830356|sp|A0Q736|TTCA2_FRATN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|118423661|gb|ABK90051.1| predicted ATPase of the PP-loop superfamily [Francisella novicida
           U112]
 gi|151572284|gb|EDN37938.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|194322091|gb|EDX19573.1| hypothetical protein FTE_0562 [Francisella tularensis subsp.
           novicida FTE]
 gi|208744275|gb|EDZ90575.1| hypothetical protein FTG_0565 [Francisella novicida FTG]
          Length = 253

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +++ +SGG DS GLL  LH ++ D+++  I     ++D   +     +   +
Sbjct: 20  KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 L +++ +       V            +     R   I  +AK      I+  H
Sbjct: 76  RKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++++ M        +G   S     +  D    + RP +  +  D+  F  + N 
Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191

Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
                P N     +  +R +V++ ++D+ L    +       L   +
Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236


>gi|221199782|ref|ZP_03572825.1| PP-loop family protein [Burkholderia multivorans CGD2M]
 gi|221208613|ref|ZP_03581613.1| PP-loop family protein [Burkholderia multivorans CGD2]
 gi|221171424|gb|EEE03871.1| PP-loop family protein [Burkholderia multivorans CGD2]
 gi|221180021|gb|EEE12425.1| PP-loop family protein [Burkholderia multivorans CGD2M]
          Length = 331

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 63  GDKVMVCLSGGKDSYAMLDILLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 117

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +++ +   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 118 TQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 177

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ++T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 178 IVQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELREFPII- 232

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM 246
            P N        +R  ++  +R+ D          F  L   V ++ +   +  + ++  
Sbjct: 233 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNALANVVPSHLMDTTLFPFASLRA 291

Query: 247 RSIIAISQDI 256
                   DI
Sbjct: 292 TGQADPQGDI 301


>gi|221215612|ref|ZP_03588575.1| PP-loop family protein [Burkholderia multivorans CGD1]
 gi|221164600|gb|EED97083.1| PP-loop family protein [Burkholderia multivorans CGD1]
          Length = 326

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 58  GDKVMVCLSGGKDSYAMLDILLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 112

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +++ +   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 113 TQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 172

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ++T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 173 IVQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELREFPII- 227

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM 246
            P N        +R  ++  +R+ D          F  L   V ++ +   +  + ++  
Sbjct: 228 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNALANVVPSHLMDTTLFPFASLRA 286

Query: 247 RSIIAISQDI 256
                   DI
Sbjct: 287 TGQADPQGDI 296


>gi|294789286|ref|ZP_06754524.1| PP-loop family protein [Simonsiella muelleri ATCC 29453]
 gi|294482711|gb|EFG30400.1| PP-loop family protein [Simonsiella muelleri ATCC 29453]
          Length = 317

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 84/256 (32%), Gaps = 24/256 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L  + +      I F  I+V+  L +       +V  +  
Sbjct: 39  GDKIMVCLSGGKDSYALLDILRQLQAS---APIDFEVIAVN--LDQKQPGFPEHVLPEYL 93

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + + +   +V         +  +      +     R  ++   AK +  T I   H  DD
Sbjct: 94  ASIGVPFKIVEEDTYSTVKRVLEEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 154 ILATMFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIQYAELKKFPII 208

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   ++D D          F  L+  V + +A           
Sbjct: 209 --PCNLCGSQPNLQRQVIGDMLKDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 266

Query: 247 RSIIAISQDILNIDST 262
           R         L  DS 
Sbjct: 267 RGQNLKHGGDLAFDSE 282


>gi|167835154|ref|ZP_02462037.1| PP-loop family family protein [Burkholderia thailandensis MSMB43]
          Length = 331

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 91/283 (32%), Gaps = 32/283 (11%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     + +   ++V +SGG DS  LL  L  +  +R+       A++
Sbjct: 44  LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDIVAVN 102

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGRNVVIRPL 214

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +RD D          F  L
Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 272

Query: 227 RVKVNNAVAML-------IPKYLTVHMRSIIAISQDILNIDST 262
              V + +          +           IA  +D    D+ 
Sbjct: 273 ANVVPSHLMDAQLFPFAGLRATGEADPNGDIAFDEDPCGTDAL 315


>gi|119945858|ref|YP_943538.1| PP-loop domain-containing protein [Psychromonas ingrahamii 37]
 gi|205830618|sp|A1SWS4|TTCA_PSYIN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|119864462|gb|ABM03939.1| PP-loop domain protein [Psychromonas ingrahamii 37]
          Length = 309

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 90/260 (34%), Gaps = 24/260 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +   R+   I F  I+V+  L +   D   ++  +  
Sbjct: 37  GDRVMVCLSGGKDSFTMLDILLEL---RAAAPIHFEIIAVN--LDQKQPDFPEHILPEYL 91

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + +V                   +     R  ++   AK + AT I   H  DD
Sbjct: 92  QKLGVDYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 151

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            L T+ +         G  L  M   ++ D     + RP   C+ ++I ++   +     
Sbjct: 152 LLATLMLNMF-----FGGKLKSMPAKLVSDNGEHVVIRPLAYCKEKEIEAYAKLKEYPII 206

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R   +  + + D+         F  ++  V + ++           
Sbjct: 207 --PCNLCGSQPNLQRQVTKNMLNEWDVKFPGRLETMFTAMQNVVPSHLSDTALFNFKEID 264

Query: 247 RSIIAISQDILNIDSTLLFY 266
           +S   I    L  D   + +
Sbjct: 265 KSSGVIDGGDLAFDKEPIKH 284


>gi|317048255|ref|YP_004115903.1| PP-loop domain-containing protein [Pantoea sp. At-9b]
 gi|316949872|gb|ADU69347.1| PP-loop domain protein [Pantoea sp. At-9b]
          Length = 311

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  LL  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTLLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V      +L + + +V+                  +     R  ++   A  + 
Sbjct: 84  --FPAHVLPAYLDKLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 CTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   R       P N        +R  V   +RD D          F  ++  V + +A
Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNIVPSHMA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            +              I    L  D   L
Sbjct: 256 DINLFDFKGIQHGDAVIDGGDLAFDRESL 284


>gi|325204266|gb|ADY99719.1| PP-loop family protein [Neisseria meningitidis M01-240355]
          Length = 319

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV       
Sbjct: 34  PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPGFPEEVLP--TYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V         +         +     R  ++   AK +  T I   H  DD
Sbjct: 90  ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   +RD D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262

Query: 247 RSIIAISQDILNIDSTLL 264
           R         L  DS  +
Sbjct: 263 RGQSLKHGGDLAFDSEKM 280


>gi|325136231|gb|EGC58839.1| PP-loop family protein [Neisseria meningitidis M0579]
 gi|325202023|gb|ADY97477.1| PP-loop family protein [Neisseria meningitidis M01-240149]
 gi|325208224|gb|ADZ03676.1| PP-loop family protein [Neisseria meningitidis NZ-05/33]
          Length = 319

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV       
Sbjct: 34  PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPGFPEEVLP--TYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V         +         +     R  ++   AK +  T I   H  DD
Sbjct: 90  ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   +RD D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262

Query: 247 RSIIAISQDILNIDSTLL 264
           R         L  DS  +
Sbjct: 263 RGQTLKHGGDLAFDSEKM 280


>gi|304387442|ref|ZP_07369633.1| PP-loop family protein [Neisseria meningitidis ATCC 13091]
 gi|304338535|gb|EFM04654.1| PP-loop family protein [Neisseria meningitidis ATCC 13091]
          Length = 319

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV       
Sbjct: 34  PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPGFPEEVLP--TYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V         +         +     R  ++   AK +  T I   H  DD
Sbjct: 90  ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   +RD D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262

Query: 247 RSIIAISQDILNIDSTLL 264
           R         L  DS  +
Sbjct: 263 RGQSLKHGGDLAFDSEKM 280


>gi|15676911|ref|NP_274057.1| hypothetical protein NMB1023 [Neisseria meningitidis MC58]
 gi|81784654|sp|Q9JZJ6|TTCA_NEIMB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|7226263|gb|AAF41423.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|316984645|gb|EFV63609.1| PP-loop family protein [Neisseria meningitidis H44/76]
 gi|325134209|gb|EGC56858.1| PP-loop family protein [Neisseria meningitidis M13399]
 gi|325140257|gb|EGC62782.1| PP-loop family protein [Neisseria meningitidis CU385]
 gi|325144400|gb|EGC66702.1| PP-loop family protein [Neisseria meningitidis M01-240013]
 gi|325200292|gb|ADY95747.1| PP-loop family protein [Neisseria meningitidis H44/76]
 gi|325206148|gb|ADZ01601.1| PP-loop family protein [Neisseria meningitidis M04-240196]
          Length = 319

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L  + +       +  A+++D   +    +EV       
Sbjct: 34  PDDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPGFPEEVLP--TYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V         +         +     R  ++   AK +  T I   H  DD
Sbjct: 90  ESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   +RD D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFVGLE 262

Query: 247 RSIIAISQDILNIDSTLL 264
           R         L  DS  +
Sbjct: 263 RGQSLKHGGDLAFDSEKM 280


>gi|121603429|ref|YP_980758.1| C32 tRNA thiolase [Polaromonas naphthalenivorans CJ2]
 gi|205830609|sp|A1VJK9|TTCA_POLNA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|120592398|gb|ABM35837.1| tRNA s(2)C-32 sulfurtransferase [Polaromonas naphthalenivorans CJ2]
          Length = 314

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 17/179 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V VSGG DS  +L  L  +   R+    +  A+++D   +        +V  +  
Sbjct: 50  GDKVMVCVSGGKDSYAMLDILLKLQK-RAPINFELVAVNLD-QKQPG---FPEHVLPEYL 104

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           S+L + + +       +  +       L +     R  ++   A  +  T I   H  DD
Sbjct: 105 SKLGVPYHIENQDTYSIVTRVIPEGKTLCSLCSRLRRGILYRVAGELGCTKIALGHHRDD 164

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            L+T ++        KGM        +  D    + RP      +D+  +   ++    
Sbjct: 165 MLQTFFLNMFFAAKLKGM----PPKLVSDDGKNIVIRPMAYVTEKDLTRWAQVQDFPII 219


>gi|161526144|ref|YP_001581156.1| C32 tRNA thiolase [Burkholderia multivorans ATCC 17616]
 gi|189349141|ref|YP_001944769.1| C32 tRNA thiolase [Burkholderia multivorans ATCC 17616]
 gi|205830564|sp|A9AKB0|TTCA_BURM1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|160343573|gb|ABX16659.1| PP-loop domain protein [Burkholderia multivorans ATCC 17616]
 gi|189333163|dbj|BAG42233.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Burkholderia multivorans ATCC 17616]
          Length = 331

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 23/250 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 63  GDKVMVCLSGGKDSYAMLDILLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEYL 117

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +++ +   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 118 TQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 177

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ++T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 178 IVQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELREFPII- 232

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM 246
            P N        +R  ++  +R+ D          F  L   V ++ +   +  + ++  
Sbjct: 233 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNALANVVPSHLMDTTLFPFASLRA 291

Query: 247 RSIIAISQDI 256
                   DI
Sbjct: 292 TGQADPQGDI 301


>gi|332296196|ref|YP_004438119.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796]
 gi|332179299|gb|AEE14988.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 241

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 20/234 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     + V +SGG DS+  L AL+ VL  R   K K  A+ VD      + D    + D
Sbjct: 21  LPNNTTLAVGLSGGKDSLITLWALNEVLRHRKE-KYKLCAVLVDQGFPGFSYD---KIKD 76

Query: 76  VCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                 I +       + +        A     R   + + AK + AT +   H  DD L
Sbjct: 77  YLILNGIPYIERKSYIYSSLSKSESPCAICSHLRRGALVDGAKIMGATHLALGHHLDDLL 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ-RNISWCED 191
           E + M    +     +    +    L   ++++ RP L    E IR    + + I+  E 
Sbjct: 137 EGIVMTIAMNGRPNVL----VPIKYLSRRDIYLIRPLLLVEEEHIRILSKKIQGINPVES 192

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
                   ER++++ +        LY     ++ +   + +   +L+ + +   
Sbjct: 193 ECPYSKDSERIKIKNW--------LYQGYNNWKVMHQHMASWARLLLEEEMKKQ 238


>gi|251789383|ref|YP_003004104.1| C32 tRNA thiolase [Dickeya zeae Ech1591]
 gi|247538004|gb|ACT06625.1| PP-loop domain protein [Dickeya zeae Ech1591]
          Length = 313

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 85/257 (33%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        +V     
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHVLPQYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  DSIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F   R      
Sbjct: 154 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAEARQFPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  ++  +RD D          F  ++  V + +            +
Sbjct: 209 -PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNAVPSHLCDTALFDFKSIRQ 267

Query: 248 SIIAISQDILNIDSTLL 264
               +    L  D   +
Sbjct: 268 GSAVVDGGDLAFDREEM 284


>gi|257386246|ref|YP_003176019.1| PP-loop domain protein [Halomicrobium mukohataei DSM 12286]
 gi|257168553|gb|ACV46312.1| PP-loop domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 332

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 76/222 (34%), Gaps = 38/222 (17%)

Query: 2   FLSPIES-VRFFVRS--LVY-------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI 51
           F   +E  VR  +R   LV        P   ++ +SGG DS+ L   L  V ++    +I
Sbjct: 26  FCRTVEKRVRRRIREDGLVPRDATPEDPETWVIGLSGGKDSVVLTQILQDVFAE--DPRI 83

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS------------WKNSKPQTGLM 99
           +  A+S+   +     + +     +   L I H VVS             ++        
Sbjct: 84  ELVALSIHEGIEGYRDESLDASVTLTDDLGIRHEVVSYDEEFDVRMDEVVEDDPEGMAAC 143

Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD------------YAEKG 147
           A     R  L+S++A  ++A  ++T H  DD+ ET  M                      
Sbjct: 144 AYCGVFRRDLLSKYADELDADKLLTGHNLDDEAETALMNVLEGDVTQIAQHFDSSLGPFD 203

Query: 148 MGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNIS 187
               G  D    + +  I R  P      +++  +     + 
Sbjct: 204 ADGDGPADRERPETDQHIPRAKPLRDIPEKEVALYARFEELP 245


>gi|257126090|ref|YP_003164204.1| PP-loop domain protein [Leptotrichia buccalis C-1013-b]
 gi|257050029|gb|ACV39213.1| PP-loop domain protein [Leptotrichia buccalis C-1013-b]
          Length = 275

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 14/188 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             ++++  F   +     I + VSGG DS+ L+     +  DR      F A+S++   R
Sbjct: 36  KFLKAINDF-DMIQDGDKIAIGVSGGKDSLLLVKLFQELKKDRR-KNFDFKAVSLNPGFR 93

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKTIN 118
             +  +  +  +   +L I   ++        N K +        + R  ++    + + 
Sbjct: 94  -NSDLD-NF-KNNLDKLNIDCEIIDTNIWEIANEKAKDYPCFLCAKMRRGILYTQVEELG 150

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +   H FDD +ET  +         G   +           L + RP +  +  DI 
Sbjct: 151 FNKLTLGHHFDDVIETTLINMF----YAGTMKTMTPKVPSTSGKLELIRPLIYVKEADII 206

Query: 179 SFLLQRNI 186
            +     I
Sbjct: 207 DYTKTNGI 214


>gi|317491972|ref|ZP_07950406.1| YdaO protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920093|gb|EFV41418.1| YdaO protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 312

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 86/256 (33%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  +L  L ++            A+++D   +    +++        
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPGFPEDILPA--YLD 94

Query: 79  RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + +V        K   P+     +     R  ++   A  + AT I   H  DD 
Sbjct: 95  SIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDM 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F   R       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEARAFPII-- 208

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +A             
Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDRRHPGRIETMFSAMQNVVPSHLADTNLFDFKGIQHG 268

Query: 249 IIAISQDILNIDSTLL 264
              +    L  D   L
Sbjct: 269 SEVVDGGDLAFDREEL 284


>gi|281212130|gb|EFA86290.1| ATP-binding domain-containing protein 3 [Polysphondylium pallidum
           PN500]
          Length = 385

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 73/234 (31%), Gaps = 27/234 (11%)

Query: 16  LVYPAHILVAVSGGS---------DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
                 + +  SGG          DS  L   + ++L+ R    +    +S+D  +    
Sbjct: 67  FQRGDKVAIGASGGITINIVFNLIDSTVLAEIM-TLLNKRHDYGLDLFLLSIDEGITGYR 125

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAK 115
            D +  V     + +I   ++S+K                          R   +   A 
Sbjct: 126 DDSLETVKRNQQQYQIPLKILSYKELYDWTMDEIVKEIGLKNNCTFCGVFRRQALDRGAV 185

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCR 173
            + A  I+T H  DD  ET+ M   R    +       C  I+      + R  PF    
Sbjct: 186 LLGANKIVTGHNADDIAETILMNLLRGDVPR----LQRCVNIVTGSEGTLPRSKPFKYTY 241

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +++I  +   + + +            R   R F++D++     + +       
Sbjct: 242 QKEIVMYAYFKKLDYFTTECIYAPNAYRGHARDFLKDLEAARPSVIIDIIHSAE 295


>gi|50120922|ref|YP_050089.1| C32 tRNA thiolase [Pectobacterium atrosepticum SCRI1043]
 gi|81645225|sp|Q6D5P6|TTCA_ERWCT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|49611448|emb|CAG74896.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 311

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++       + + + +V        K+  P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPQYLDNIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   R       P N        +R  ++  +RD D          F  ++  V + +A
Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRHPGRIETMFSAMQNVVPSHLA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   L
Sbjct: 256 DHALFDFKNIRHGSDVVDGGDLAFDREEL 284


>gi|238021289|ref|ZP_04601715.1| hypothetical protein GCWU000324_01188 [Kingella oralis ATCC 51147]
 gi|237868269|gb|EEP69275.1| hypothetical protein GCWU000324_01188 [Kingella oralis ATCC 51147]
          Length = 317

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 83/255 (32%), Gaps = 22/255 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  LL  L  + +     + +  A+++D   +    +EV        
Sbjct: 35  GDKIMVCLSGGKDSYALLDILRQLQASAPI-EFELVAVNLD-QKQPGFPEEVLP--TYLE 90

Query: 79  RLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + +V         +         +     R  ++   AK +  T I   H  DD 
Sbjct: 91  SIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDDI 150

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCE 190
           + T+++         G  L  M   ++ D    I  RP    + +D+  +   +      
Sbjct: 151 IATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII- 204

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   ++D D          F  L+  V + +A           R
Sbjct: 205 -PCNLCGSQPNLQRQVIGDMLKDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLQR 263

Query: 248 SIIAISQDILNIDST 262
                    L  DS 
Sbjct: 264 GQALKHGGDLAFDSE 278


>gi|295093682|emb|CBK82773.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Coprococcus sp. ART55/1]
          Length = 408

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 25/225 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DS  L+      L   +    +   I +D       +  +    D   
Sbjct: 162 GDRIAVCISGGKDS-FLMAKCFQELKRHNKFPFELKFIVMDPGYSPANRKVIE---DNAR 217

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L I   +            +          R   +  +AK +    I   H +DD +ET
Sbjct: 218 MLNIPIQIFESDIFDSVYNVEKSPCYLCARMRRGHLYSYAKELGCNKIALGHHYDDVIET 277

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           + M         G  +  M   +       + + RP    R +DI+++     + + +  
Sbjct: 278 ILMGML-----YGAQMQTMMPKLHSTNFEGMELIRPLYMVREDDIKAWRDYNELHFIQCA 332

Query: 193 S----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
                      N + + +R  +++ +  +     +++   F+ + 
Sbjct: 333 CKFTDTCTTCNNEETKSKRQEIKQLIATLKKTNPFVEGNIFKSVE 377


>gi|163816026|ref|ZP_02207396.1| hypothetical protein COPEUT_02206 [Coprococcus eutactus ATCC 27759]
 gi|158448836|gb|EDP25831.1| hypothetical protein COPEUT_02206 [Coprococcus eutactus ATCC 27759]
          Length = 402

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 25/225 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DS  L+      L   +    +   I +D       +  +    D   
Sbjct: 158 GDRIAVCISGGKDS-FLMAKCFQELKRHNKFPFELKFIVMDPGYSPANRKVIE---DNAR 213

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L I   +            +          R   +  +AK +    I   H +DD +ET
Sbjct: 214 MLNIPIQIFESDIFDSVYNVEKSPCYLCARMRRGHLYSYAKELGCNKIALGHHYDDVIET 273

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           + M         G  +  M   +       + + RP    R +DI+++     + + +  
Sbjct: 274 ILMGML-----YGAQMQTMMPKLHSTNFEGMELIRPLYMVREDDIKAWRDYNELHFIQCA 328

Query: 193 S----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
                      N + + +R  +++ +  +     +++   F+ + 
Sbjct: 329 CKFTDTCTTCNNEETKSKRQEIKQLIATLKKTNPFVEGNIFKSVE 373


>gi|88859652|ref|ZP_01134292.1| hypothetical protein PTD2_21752 [Pseudoalteromonas tunicata D2]
 gi|88818669|gb|EAR28484.1| hypothetical protein PTD2_21752 [Pseudoalteromonas tunicata D2]
          Length = 304

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 22/254 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +   L S+       K +  A+++D   +        +V     
Sbjct: 37  GDRIMVCMSGGKDSYTMFDILQSLQRAAPI-KFELIAVNLD-QKQPG---FPEHVLPQYF 91

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V     K             +     R  ++   AK + AT I   H  DD
Sbjct: 92  ESLGVEYKIVEEDTYKIVTDIIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDD 151

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+++        KGM           D    + RP   C+  DI  +   +      
Sbjct: 152 MIETLFLNMFYGGKLKGM----PAKLASDDGQHMVIRPLAYCKEADIEEYAEHKEFPII- 206

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N     +  +R  ++  +++ D          F  ++    + +A           +
Sbjct: 207 -PCNLCGSQENLQRKNIKMMLQEWDKTNPGRIETIFTAMQNVTPSHLADNNLFDFKNLQK 265

Query: 248 SIIAISQDILNIDS 261
           S +AI +  + +D 
Sbjct: 266 SDVAIGEGDIALDK 279


>gi|239618090|ref|YP_002941412.1| PP-loop domain protein [Kosmotoga olearia TBF 19.5.1]
 gi|239506921|gb|ACR80408.1| PP-loop domain protein [Kosmotoga olearia TBF 19.5.1]
          Length = 307

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 73/208 (35%), Gaps = 27/208 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FLS ++      +     + ILVAVSGG DS+ L   L+ +       + +   + +D  
Sbjct: 30  FLSRVKKAIHMFKMFDKSSKILVAVSGGKDSLVLWDVLYRL-------EYQTEGLYIDLG 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------LI 110
           +   ++              +   +   +          AA + R             ++
Sbjct: 83  IGSYSETSKEKAKSFAKSRNLTLHIEDVRKYLHGLSTPEAAWKMRRKTCSVCGLVKRYIM 142

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---SR 167
           ++ +   +  +I T H  DD+  T+             G  G    +L   +  +    +
Sbjct: 143 NKFSHEGDYKVIATGHNLDDEAATLLGNLLHWQ----TGYLGKQYPVLPKTHEKLTPKVK 198

Query: 168 PFLRCRREDIRSFLLQRNISWC--EDPS 193
           P +    +++ +F + + I +   E PS
Sbjct: 199 PLILVTEKEVATFAIMKGIEYIFEECPS 226


>gi|190572183|ref|YP_001970028.1| hypothetical protein Smlt0103 [Stenotrophomonas maltophilia K279a]
 gi|190010105|emb|CAQ43713.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 309

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 21/187 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS  LL  L  +         +  A+++D   +    D   +V  + 
Sbjct: 51  AGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVP-FELVAVNLD-QKQP---DFPEHVLPEY 105

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + L + + +       V  +       + +     R   +  +A+T   T I   H  D
Sbjct: 106 LAGLGVPYHIIEQDTYSVVSRVIPEGKTMCSLCSRLRRGALYNYAETHGFTKIALGHHRD 165

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D + T +M            LSGM   +  D     + RP    R  DI  +   R    
Sbjct: 166 DMVATFFMNLFHHAK-----LSGMPPKLRSDDGKHVVIRPLAYVRESDIVDYAQARQFPI 220

Query: 189 CEDPSNT 195
              P N 
Sbjct: 221 I--PCNL 225


>gi|53717955|ref|YP_106941.1| C32 tRNA thiolase [Burkholderia pseudomallei K96243]
 gi|53724604|ref|YP_104839.1| C32 tRNA thiolase [Burkholderia mallei ATCC 23344]
 gi|67639064|ref|ZP_00437981.1| PP-loop family protein [Burkholderia mallei GB8 horse 4]
 gi|76811437|ref|YP_331933.1| C32 tRNA thiolase [Burkholderia pseudomallei 1710b]
 gi|121598530|ref|YP_994348.1| PP-loop family protein [Burkholderia mallei SAVP1]
 gi|124386645|ref|YP_001028003.1| PP-loop family protein [Burkholderia mallei NCTC 10229]
 gi|126441802|ref|YP_001057380.1| PP-loop family protein [Burkholderia pseudomallei 668]
 gi|126451258|ref|YP_001081774.1| PP-loop family protein [Burkholderia mallei NCTC 10247]
 gi|126452389|ref|YP_001064623.1| PP-loop family protein [Burkholderia pseudomallei 1106a]
 gi|167004603|ref|ZP_02270361.1| PP-loop family protein [Burkholderia mallei PRL-20]
 gi|167717727|ref|ZP_02400963.1| PP-loop family protein [Burkholderia pseudomallei DM98]
 gi|167736759|ref|ZP_02409533.1| PP-loop family protein [Burkholderia pseudomallei 14]
 gi|167813861|ref|ZP_02445541.1| PP-loop family protein [Burkholderia pseudomallei 91]
 gi|167822379|ref|ZP_02453850.1| PP-loop family protein [Burkholderia pseudomallei 9]
 gi|167843967|ref|ZP_02469475.1| PP-loop family protein [Burkholderia pseudomallei B7210]
 gi|167892470|ref|ZP_02479872.1| PP-loop family protein [Burkholderia pseudomallei 7894]
 gi|167900969|ref|ZP_02488174.1| PP-loop family protein [Burkholderia pseudomallei NCTC 13177]
 gi|167909185|ref|ZP_02496276.1| PP-loop family protein [Burkholderia pseudomallei 112]
 gi|167917219|ref|ZP_02504310.1| PP-loop family protein [Burkholderia pseudomallei BCC215]
 gi|217424979|ref|ZP_03456475.1| PP-loop family protein [Burkholderia pseudomallei 576]
 gi|226199781|ref|ZP_03795332.1| PP-loop family protein [Burkholderia pseudomallei Pakistan 9]
 gi|242314458|ref|ZP_04813474.1| PP-loop family protein [Burkholderia pseudomallei 1106b]
 gi|254176826|ref|ZP_04883483.1| PP-loop family protein [Burkholderia mallei ATCC 10399]
 gi|254196263|ref|ZP_04902687.1| PP-loop family protein [Burkholderia pseudomallei S13]
 gi|254201947|ref|ZP_04908311.1| PP-loop family protein [Burkholderia mallei FMH]
 gi|254259203|ref|ZP_04950257.1| PP-loop family protein [Burkholderia pseudomallei 1710a]
 gi|254359781|ref|ZP_04976052.1| PP-loop family protein [Burkholderia mallei 2002721280]
 gi|81380602|sp|Q63Y74|TTCA_BURPS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|81603697|sp|Q62EN9|TTCA_BURMA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123600535|sp|Q3JWX0|TTCA_BURP1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830565|sp|A3MND8|TTCA_BURM7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830566|sp|A2S7T4|TTCA_BURM9 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830567|sp|A1V7Z5|TTCA_BURMS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830568|sp|A3NQK2|TTCA_BURP0 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830569|sp|A3N4V9|TTCA_BURP6 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|52208369|emb|CAH34303.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
 gi|52428027|gb|AAU48620.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|76580890|gb|ABA50365.1| PP-loop family family [Burkholderia pseudomallei 1710b]
 gi|121227340|gb|ABM49858.1| PP-loop family protein [Burkholderia mallei SAVP1]
 gi|124294665|gb|ABN03934.1| PP-loop family protein [Burkholderia mallei NCTC 10229]
 gi|126221295|gb|ABN84801.1| PP-loop family protein [Burkholderia pseudomallei 668]
 gi|126226031|gb|ABN89571.1| PP-loop family protein [Burkholderia pseudomallei 1106a]
 gi|126244128|gb|ABO07221.1| PP-loop family protein [Burkholderia mallei NCTC 10247]
 gi|147747841|gb|EDK54917.1| PP-loop family protein [Burkholderia mallei FMH]
 gi|148028995|gb|EDK86927.1| PP-loop family protein [Burkholderia mallei 2002721280]
 gi|160697867|gb|EDP87837.1| PP-loop family protein [Burkholderia mallei ATCC 10399]
 gi|169653006|gb|EDS85699.1| PP-loop family protein [Burkholderia pseudomallei S13]
 gi|217391999|gb|EEC32025.1| PP-loop family protein [Burkholderia pseudomallei 576]
 gi|225928132|gb|EEH24168.1| PP-loop family protein [Burkholderia pseudomallei Pakistan 9]
 gi|238519619|gb|EEP83089.1| PP-loop family protein [Burkholderia mallei GB8 horse 4]
 gi|242137697|gb|EES24099.1| PP-loop family protein [Burkholderia pseudomallei 1106b]
 gi|243060159|gb|EES42345.1| PP-loop family protein [Burkholderia mallei PRL-20]
 gi|254217892|gb|EET07276.1| PP-loop family protein [Burkholderia pseudomallei 1710a]
          Length = 331

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 32/282 (11%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     + +   ++V +SGG DS  LL  L  +  +R+       A++
Sbjct: 44  LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDIVAVN 102

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +RD D          F  L
Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFNAL 272

Query: 227 RVKVNNAVAML-------IPKYLTVHMRSIIAISQDILNIDS 261
              V + +          +           IA  +D    D+
Sbjct: 273 ANVVPSHLMDARLFPFAGLRATGEADPNGDIAFDEDPCGTDA 314


>gi|92113003|ref|YP_572931.1| PP-loop [Chromohalobacter salexigens DSM 3043]
 gi|122420525|sp|Q1QZ76|TTCA_CHRSD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|91796093|gb|ABE58232.1| tRNA s(2)C-32 sulfurtransferase [Chromohalobacter salexigens DSM
           3043]
          Length = 284

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 84/260 (32%), Gaps = 22/260 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L ++  +      +  A+++D   +        +V  +  
Sbjct: 36  GDKVMVCLSGGKDSYTMLDILMNLQRNAPVA-FELVAVNLD-QKQPG---FPEHVLPEYL 90

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            R+ + + +V                   A     R   +   A+ I A  +   H  +D
Sbjct: 91  ERVGVPYHIVERDTYSVVKEKTPEGKTTCALCSRLRRGTLYGFAEEIGANKVALGHHRED 150

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  L  M   +L D    I  RP   CR  DI  +   R     
Sbjct: 151 MLETLFLNMF-----FGGSLKSMPPKLLSDDGKHIVIRPLAYCREADIAEYAEWREFPII 205

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+++          + + +   + N     +          +
Sbjct: 206 --PCNLCGS-QPNLQRQVVKEMLTEWEEKHPGRLETMFKAITNVAPSQLADRAMFDFEGL 262

Query: 250 IAISQDILNIDSTLLFYLLR 269
               +D L         L R
Sbjct: 263 EDKQRDFLARRIETFDVLAR 282


>gi|262402130|ref|ZP_06078691.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC586]
 gi|262350912|gb|EEZ00045.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio sp. RC586]
          Length = 310

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 88/259 (33%), Gaps = 24/259 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        +V  +  
Sbjct: 40  GDRIMVCLSGGKDSFTMLEILMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPEYL 94

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + ++                   A     R  ++   AK + AT I   H  DD
Sbjct: 95  ESLGVEYKIIEEDTYSIVQDKVPEGKTTCALCSRLRRGILYRTAKELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  + GM   ++ D     + RP   CR +DI  +   R     
Sbjct: 155 ILETLFLNMF-----YGGKMKGMPPKLVSDNGEHVVIRPLAYCREKDIIKYSDMRAYPII 209

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V+  + D D          F+ ++  V + +A           
Sbjct: 210 --PCNLCGSQPNLQRQAVKMMLNDWDKRFPGRIETMFRAMQNVVPSHLADFALFDFKSIN 267

Query: 247 RSIIAISQDILNIDSTLLF 265
           +    I+   +  D   + 
Sbjct: 268 KDSGVINGGDIGFDKEEMA 286


>gi|254369146|ref|ZP_04985158.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122096|gb|EDO66236.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 251

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +++ +SGG DS GLL  LH ++ D+++  I     ++D   +     +   +
Sbjct: 20  KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 L +++ +       V            +     R   I  +AK      I+  H
Sbjct: 76  KKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++++ M        +G   S     +  D    + RP +  +  D+  F  + N 
Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191

Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
                P N     +  +R +V++ ++D+ L    +       L   +
Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236


>gi|288931458|ref|YP_003435518.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
 gi|288893706|gb|ADC65243.1| PP-loop domain protein [Ferroglobus placidus DSM 10642]
          Length = 290

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 73/197 (37%), Gaps = 10/197 (5%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           +LS +E        L     +L A+SGG DS+ ++ AL  +        IK  A+ ++  
Sbjct: 27  YLSLVERSIRKYGILKRGEKVLAAISGGKDSVAMIAALKELEDKLG---IKLEALHINLG 83

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKT 116
           + E ++        VC  L +   VV      +     +    +    A+  +++  A+ 
Sbjct: 84  IGEYSRKSEEVSRKVCEELDVPLHVVYLSEYGFTIGDVKRKACSVCGNAKRYIMNRFARE 143

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               +I T H  +D +  V         E    L  +     Y   +  ++P      ++
Sbjct: 144 EGFDVIATGHCAEDIVANVLKNLYSGNFEWSEKL--LPRIEGYFKFVSKAKPLYEIGEKE 201

Query: 177 IRSFLLQRNISWCEDPS 193
              F+L + I++  D  
Sbjct: 202 NLLFVLSKGITFLPDEC 218


>gi|148978813|ref|ZP_01815166.1| putative ATPase [Vibrionales bacterium SWAT-3]
 gi|145962124|gb|EDK27409.1| putative ATPase [Vibrionales bacterium SWAT-3]
          Length = 297

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L  +   R    IKF  ++V+  L +       ++
Sbjct: 32  NMIEENDVVMACISGGKDSFAMLDILLRL---REAAPIKFDVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT I   
Sbjct: 87  LPEYFETLNIPYYIVDKDTYSVVKEKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR  D+  +   + 
Sbjct: 147 HHMDDIVETMFLNMFHGARLKAM----PPKLRSDDGRNVVIRPLTYCRETDLIKYAEHKE 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|294917174|ref|XP_002778414.1| hypothetical protein Pmar_PMAR018210 [Perkinsus marinus ATCC 50983]
 gi|239886807|gb|EER10209.1| hypothetical protein Pmar_PMAR018210 [Perkinsus marinus ATCC 50983]
          Length = 484

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRE---TAKDEVRYVSDVC 77
           +++++SGG DS   LI L ++   R     K  A+ + +   RE    A+ E+  V+ +C
Sbjct: 95  VVLSLSGGVDSSSTLILLCALRYHR-VADWKLRALYMGYSGNRENLDEARSELNLVAWLC 153

Query: 78  SRLRIAHSVVSWKNSKPQT------------GLMAAAREARYALISEHAKTINATLIMTA 125
            +  +     +    +P                    +  R+ + S  +   N  +++  
Sbjct: 154 EQCNVQLFAFNIDLPRPHGLEGTTSGGVTRDEYETQTKSIRFRMYSLASGDENC-VVVLG 212

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQR 184
           H  DD  E    +  R +    M            L+  I  RP +  R+        + 
Sbjct: 213 HHQDDVDENRLEQLSRGHVMGDMDGMHRVRESPPGLDRCIVCRPLIYERKSTFVKVATEA 272

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           +I +  D +       R   R+ +  + L      M +       +++  A LI
Sbjct: 273 HIPYVHDSTPAWS--VRGITRKALDAVLLDDNTTAMHQILADVACMSSRAAELI 324


>gi|170696061|ref|ZP_02887198.1| PP-loop domain protein [Burkholderia graminis C4D1M]
 gi|170139053|gb|EDT07244.1| PP-loop domain protein [Burkholderia graminis C4D1M]
          Length = 324

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 84/238 (35%), Gaps = 30/238 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  +  
Sbjct: 55  GDKVMVCLSGGKDSYAMLDVLMRL-RERAPINFDIVAVNLD-QKQPG---FPEHVLPEYL 109

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L I   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 110 KQLDIPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 169

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 170 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPLAYVKETDLEKYAELREFPII- 224

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
            P N        +R  ++  +RD +        K+F      + NA+  ++P +L  H
Sbjct: 225 -PCNLCGSQPNLKRAEMKALIRDWE--------KRFPGRIENMFNALTNVVPSHLMDH 273


>gi|237749225|ref|ZP_04579705.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Oxalobacter
           formigenes OXCC13]
 gi|229380587|gb|EEO30678.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Oxalobacter
           formigenes OXCC13]
          Length = 299

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 18/206 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            R +     ++V VSGG DS  LL  L  + S R+       A+++D  L     D +  
Sbjct: 56  FRLIEENDKVMVCVSGGKDSFALLDILVVLQS-RAPIHFDIVAVNLDQQLPGFPTDILP- 113

Query: 73  VSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
                 + ++ + +                  + +     R  ++ + A  +  T I   
Sbjct: 114 --AYLEKKQVPYHIEVQDTYSIIQRLIPEGKAVCSLCSRLRRGILYKVASELGVTKIALG 171

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD LET ++        K    S        D    + RP +  +  D+  F   + 
Sbjct: 172 HHRDDVLETFFLNLFFGSKLK----SMPPKLKSKDGKHIVIRPLINVKETDLEKFAQMQQ 227

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDI 211
                 P N     +    R+ ++ +
Sbjct: 228 YPVF--PKNLCGA-KENMQRQHIKSM 250


>gi|251770826|gb|EES51414.1| probable ATPase, PP-loop superfamily protein [Leptospirillum
           ferrodiazotrophum]
          Length = 312

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 35/220 (15%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              H+LVAVSGG DS+ L   L  +         + +   +D  + E + +   +V    
Sbjct: 46  AGDHVLVAVSGGKDSLALWDILTRL-------GYRTTGFHLDLGIGEYSAESRGHVEAFA 98

Query: 78  SRLRIAHSVVSWKNSKPQTG---LMAAAREA--------RYALISEHAKTINATLIMTAH 126
           SR  +   V S ++S   +      A  R A        RY   ++ A   NAT++ T H
Sbjct: 99  SRHGLPLVVESLRDSVNGSVTDIAQATRRPACSGCGMSKRY-FFNKVALATNATVLATGH 157

Query: 127 TFDDQLETVYMRSQR-------DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             DD+   ++                    +SG+             +P +R   +++ +
Sbjct: 158 NLDDEASRLFGNLLHWHDEYLAKNRPDLPAISGLAKK---------VKPLVRLTEKEMAA 208

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           +   R I +           +++  ++ + +I+  +   K
Sbjct: 209 YAFLRKIPYVVKECPHSIDAKQILFKKVLGEIEAASPGTK 248


>gi|205830648|sp|B2FU61|TTCA_STRMK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 306

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 21/187 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS  LL  L  +         +  A+++D   +    D   +V  + 
Sbjct: 48  AGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVP-FELVAVNLD-QKQP---DFPEHVLPEY 102

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + L + + +       V  +       + +     R   +  +A+T   T I   H  D
Sbjct: 103 LAGLGVPYHIIEQDTYSVVSRVIPEGKTMCSLCSRLRRGALYNYAETHGFTKIALGHHRD 162

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D + T +M            LSGM   +  D     + RP    R  DI  +   R    
Sbjct: 163 DMVATFFMNLFHHAK-----LSGMPPKLRSDDGKHVVIRPLAYVRESDIVDYAQARQFPI 217

Query: 189 CEDPSNT 195
              P N 
Sbjct: 218 I--PCNL 222


>gi|253688694|ref|YP_003017884.1| PP-loop domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259550629|sp|C6DJ78|TTCA_PECCP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|251755272|gb|ACT13348.1| PP-loop domain protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 311

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSFTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V       + + + +V        K+  P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPQYLDSIGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   R       P N        +R  ++  +RD D          F  ++  V + +A
Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   L
Sbjct: 256 DHALFDFKGIRHGSDVVDGGDLAFDREEL 284


>gi|254522955|ref|ZP_05135010.1| PP-loop domain protein [Stenotrophomonas sp. SKA14]
 gi|219720546|gb|EED39071.1| PP-loop domain protein [Stenotrophomonas sp. SKA14]
          Length = 287

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 21/187 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS  LL  L  +         +  A+++D   +    D   +V  + 
Sbjct: 29  AGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVP-FELVAVNLD-QKQP---DFPEHVLPEY 83

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + L + + +       V  +       + +     R   +  +A+T   T I   H  D
Sbjct: 84  LAGLGVPYHIIEQDTYSVVSRVIPEGKTMCSLCSRLRRGALYNYAETHGFTKIALGHHRD 143

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D + T +M            LSGM   +  D     + RP    R  DI  +   R    
Sbjct: 144 DMVATFFMNLFHHAK-----LSGMPPKLRSDDGRHVVIRPLAYVRESDIVEYAQARQFPI 198

Query: 189 CEDPSNT 195
              P N 
Sbjct: 199 I--PCNL 203


>gi|150402525|ref|YP_001329819.1| PP-loop domain-containing protein [Methanococcus maripaludis C7]
 gi|150033555|gb|ABR65668.1| PP-loop domain protein [Methanococcus maripaludis C7]
          Length = 311

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 20/188 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + + +SGG DS+ +   L+     +   K K  AI V+  +     D +      C   
Sbjct: 48  KVAMGLSGGKDSLVMAHILNEFY--KQIPKSKILAIIVNEGIEGYRTDGIDAAVKFCEEH 105

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            I + +V +K+                       +     R  +++  +       +   
Sbjct: 106 GIEYRIVHFKDYLGTNLDEIVKLAKEKNLTMNPCSFCGVIRRKILNRVSIEEKCDYLAIG 165

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD  + V M       +K   L+ +  ++     +   +P  +   E++        
Sbjct: 166 HNLDDVAQAVMMNYIEGDVKK---LAFLGKSLKNPKFVKRIKPLEKIPEEEVLLIADLLE 222

Query: 186 ISWCEDPS 193
           + + + P 
Sbjct: 223 LKYHKSPC 230


>gi|167585222|ref|ZP_02377610.1| PP-loop domain protein [Burkholderia ubonensis Bu]
          Length = 324

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 26/271 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     + +   ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 35  LFKRIVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 93

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +R+ +   +       +  +         +     R  +
Sbjct: 94  LD-QKQPG---FPEHVLPEYLTRIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 149

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 150 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPL 205

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +R+ D          F  L
Sbjct: 206 AYVKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFNAL 263

Query: 227 RVKV-NNAVAMLIPKYLTVHMRSIIAISQDI 256
              V ++ +   +  + ++          DI
Sbjct: 264 AKVVPSHLMDTTLFPFTSLRATGEADPQGDI 294


>gi|167575096|ref|ZP_02367970.1| PP-loop family protein [Burkholderia oklahomensis C6786]
          Length = 331

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 85/236 (36%), Gaps = 30/236 (12%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
           +   ++V +SGG DS  LL  L  +  +R+       A+++D   +        +V  + 
Sbjct: 64  HGDKVMVCLSGGKDSYALLDVLLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEY 118

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + + +   +       +  +         +     R  ++   A  + AT I   H  D
Sbjct: 119 LATIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRD 178

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D L+T+ +        KGM      D    D    + RP    +  D+  +   R     
Sbjct: 179 DILQTLLLNLFYGGKLKGMPPKLQSD----DGRNVVIRPLAYVKETDLEKYAELREFPII 234

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             P N        +R  ++  +R+ D        K+F      + NA+A ++P +L
Sbjct: 235 --PCNLCGSQPNLKRAEMKALIREWD--------KRFPGRVENMFNALANVVPSHL 280


>gi|56708253|ref|YP_170149.1| C32 tRNA thiolase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670724|ref|YP_667281.1| hypothetical protein FTF1187 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457372|ref|ZP_03665845.1| hypothetical protein FtultM_06802 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370739|ref|ZP_04986744.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254875073|ref|ZP_05247783.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81597358|sp|Q5NFP3|TTCA2_FRATT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|123063441|sp|Q14H45|TTCA2_FRAT1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|56604745|emb|CAG45820.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321057|emb|CAL09203.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568982|gb|EDN34636.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841072|gb|EET19508.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159480|gb|ADA78871.1| hypothetical protein NE061598_06875 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 251

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +++ +SGG DS GLL  LH ++ D+++  I     ++D   +     +   +
Sbjct: 20  KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 L +++ +       V            +     R   I  +AK      I+  H
Sbjct: 76  RKYLDDLGVSYEIETKNTYGVIIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++++ M        +G   S     +  D    + RP +  +  D+  F  + N 
Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191

Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
                P N     +  +R +V++ ++D+ L    +       L   +
Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236


>gi|299068269|emb|CBJ39490.1| putative ATP pyrophosphatase [Ralstonia solanacearum CMR15]
          Length = 312

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 87/247 (35%), Gaps = 22/247 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG DS  +L  L ++   R+    K  A+++D   +    ++V    +   ++ 
Sbjct: 34  VLVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEDVLP--NYLKKVG 89

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +V                   +     R  +I   AK + A  I   H  DD + T
Sbjct: 90  VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++         G  +  M   +  D    I  RP   C  ++I ++           P 
Sbjct: 150 FFLNMF-----FGGKMKAMPPKLATDNGDHIVIRPLAYCSEKEIAAYARAMEFPII--PC 202

Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N     +  +R +V+  + + +  A       F  L+  V + +A             + 
Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQAPGRIDNIFASLQSVVPSHLADTDLFDFNGLTTGLA 262

Query: 251 AISQDIL 257
            I ++ L
Sbjct: 263 KIGEEAL 269


>gi|281419847|ref|ZP_06250846.1| ATPase of the pp-loop family protein [Prevotella copri DSM 18205]
 gi|281405974|gb|EFB36654.1| ATPase of the pp-loop family protein [Prevotella copri DSM 18205]
          Length = 253

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 19/196 (9%)

Query: 1   MFLSPIESVRFFVRS------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54
           M  +  + ++ F +       L     IL+A+SGG DS+ L+  L    +      I+  
Sbjct: 22  MMKAEQKVLKRFNKGCVDYHLLQDGDRILIALSGGKDSLELVRLLAQ-RARIYKPHIEVE 80

Query: 55  AISV--DHCLRETAKDEVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREARYAL 109
           A  +  D  +         Y+ D C+   I   ++     +++ P+          R   
Sbjct: 81  AAHIIMD-NIPYETDR--SYLQDFCAENGIKLHILHSSFDESTDPRKTRCFLCAWNRRKT 137

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + E A +     I   H  DD L T+ M        +G   +      L    L I RP 
Sbjct: 138 LFEFAVSHGFNKIALGHHMDDILVTLLMNIT----FEGSHSTMQPSLPLKHYPLTIIRPL 193

Query: 170 LRCRREDIRSFLLQRN 185
                 DIR    + +
Sbjct: 194 CLVHEADIRQVAEELH 209


>gi|163782668|ref|ZP_02177665.1| hypothetical protein HG1285_17330 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882241|gb|EDP75748.1| hypothetical protein HG1285_17330 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 303

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 78/228 (34%), Gaps = 20/228 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            R       +LV VSGG DS+ L   L  +  +     +          + E ++   R 
Sbjct: 45  FRMFTNEDRVLVTVSGGKDSLALWHVLRKLGYNADGFYLHL-------GIGEYSERSRRK 97

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--REA--------RYALISEHAKTINATLI 122
           V +   RL     VV           +  A  REA        RY   +  AK     ++
Sbjct: 98  VEEFAERLGAKVIVVDLMEELAGIPELKKATSREACSVCGLVKRYN-FNRVAKEYGYNVV 156

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD+  ++      ++  K +G          +  +   +PF +   ++   + L
Sbjct: 157 ATGHNLDDEASSLLANVI-NWNVKYLG-RKYPVLEEEEGFVRKVKPFCKFTEKETALYAL 214

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
              I + E+     +    +  +  +  I+      K++ + +   KV
Sbjct: 215 LNGIEFVEEECPYSEDASSIFYKETLNRIEEKFPGTKLRFYLEYLRKV 262


>gi|225712776|gb|ACO12234.1| tRNA Ile-lysidine synthase [Lepeophtheirus salmonis]
          Length = 275

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 21/231 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSV---LSDRSFGKIKFSAISV 58
           F   +E++  F   +     +LV +SGG DS+ LL  L        + +  +    A++V
Sbjct: 18  FKPFLEAMEQF-SMIKNGDRVLVCLSGGKDSLSLLHTLRQYRFYAKETNGIEFDLGAVTV 76

Query: 59  DHCLRETAKD-EVRYVSDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISE 112
           D      +   + R +      L I +     ++++       T + +     +   I  
Sbjct: 77  D----PGSDAYDPRPLIPYLEELDIHYLYEKQNIMAAALEADCTSICSYCSRMKRGRIYA 132

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+     ++      DD +E+  M    +   +    +   +  + + +L + RPF+  
Sbjct: 133 AARKEKYNVLAMGQHLDDLVESFIMSIFHNGRMR----TMKANYSVKEKDLRVIRPFVYV 188

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
           R   +R F   + +     P N    FE  + R   + + L A  L   + 
Sbjct: 189 RESKLREFAQTKKLPII--PENCPACFESPKERHRTKQL-LAAQELLFPRL 236


>gi|269968427|ref|ZP_06182443.1| putative ATPase [Vibrio alginolyticus 40B]
 gi|269826975|gb|EEZ81293.1| putative ATPase [Vibrio alginolyticus 40B]
          Length = 265

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 20/189 (10%)

Query: 16  LVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++ 
Sbjct: 1   MIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHIL 55

Query: 75  -DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +    L I + +V                         R   +   A+ + AT +   H
Sbjct: 56  PEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKVGATKLALGH 115

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD +ET+++        K M           D    + RP   CR +D+  +   ++ 
Sbjct: 116 HMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKDF 171

Query: 187 SWCEDPSNT 195
                P N 
Sbjct: 172 PII--PCNL 178


>gi|197301463|ref|ZP_03166543.1| hypothetical protein RUMLAC_00195 [Ruminococcus lactaris ATCC
           29176]
 gi|197299501|gb|EDY34021.1| hypothetical protein RUMLAC_00195 [Ruminococcus lactaris ATCC
           29176]
          Length = 398

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 12/180 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM +      +     F   +   + +D       +  +   
Sbjct: 153 ELVKPGDKIAVCISGGKDSMLMAKLFQELKRHNKF-DFEVKFLVMDPGYSPANRQVIE-- 209

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +   RL I   +            +          R   +  HA+ +    I   H +D
Sbjct: 210 -ENAKRLEIPIEIFESDIFESVYNVEKSPCYLCARMRRGYLYSHAQKMGCNKIALGHHYD 268

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M     Y+ +   +     +  ++  + + RP    R + I+++    ++ + 
Sbjct: 269 DVIETILMGML--YSAQFQTMMPKLHSTNFE-GMELIRPLYLVREDAIKAWRDYNDLHFI 325


>gi|154490820|ref|ZP_02030761.1| hypothetical protein PARMER_00737 [Parabacteroides merdae ATCC
           43184]
 gi|154088568|gb|EDN87612.1| hypothetical protein PARMER_00737 [Parabacteroides merdae ATCC
           43184]
          Length = 251

 Score = 91.9 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 18/194 (9%)

Query: 1   MFLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F    E V+  +     +V    IL+ +SGG DS+ L+  L    S     + +     
Sbjct: 10  LFRKVEEKVKKAIFEYGLIVDGDRILIGLSGGKDSLALVDLLGR-RSKIFRPRFEVIVTH 68

Query: 58  V---DHCLRETAKDEVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREARYALIS 111
           +   +   R     ++ Y+        ++  V       ++  +          R   + 
Sbjct: 69  IVMSNIPYRS----DIDYLKSRADEHGLSFFVHETSFDASTDTRKSPCFLCSWTRRKALF 124

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + AK      I   H  DD LET+ M        +G   +      +   ++ I RP   
Sbjct: 125 DIAKRHGCNKIALGHHQDDILETLLMNMI----HQGAIGTMPPRLKMDKFDMEIIRPMCL 180

Query: 172 CRREDIRSFLLQRN 185
              +D+    + R 
Sbjct: 181 VEEKDLTRIAVWRG 194


>gi|327401576|ref|YP_004342415.1| PP-loop domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317084|gb|AEA47700.1| PP-loop domain protein [Archaeoglobus veneficus SNP6]
          Length = 300

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 29/218 (13%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L  VSGG DS  +L  L  +     F   +  A+ +D  + E +K  ++ V ++C
Sbjct: 46  RGEKVLACVSGGKDSSAMLGVLSRLSEKLDF---EVEALHIDLGIGEYSKKSMKTVEELC 102

Query: 78  SRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             L I   V+S        +  P+    A     RY L++ +A+     ++ T HT +D 
Sbjct: 103 GVLGIKLHVISVAEFGFTIDDIPKKTCSACGIVKRY-LMNRYARLNGFDVVATGHTAEDI 161

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISWCE 190
           +   +             L  +  T  +D  +    RP      ++   +++ R + +  
Sbjct: 162 ISFFFKNWLSGNFSWSEKL--LPRTESFDERIVTRIRPLYDRSEKENLLYVICRGLPFLL 219

Query: 191 DPSNTDDR----------------FERVRVRRFVRDID 212
           D      R                F R  V    + ++
Sbjct: 220 DDCPHAPRDEWKEIVYYIESRKPGFRRNFVLNLAKYLE 257


>gi|294671331|ref|ZP_06736182.1| hypothetical protein NEIELOOT_03040 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306963|gb|EFE48206.1| hypothetical protein NEIELOOT_03040 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 311

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMMRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  L
Sbjct: 251 ADTELFDFAGLKRGQNLKHGGDLAFDSETL 280


>gi|258405204|ref|YP_003197946.1| PP-loop domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257797431|gb|ACV68368.1| PP-loop domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 245

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 74/224 (33%), Gaps = 17/224 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-VS 74
           L   A + +A SGG DS  LL  L S+   R    I+  A+ ++       + E  + ++
Sbjct: 28  LWPGARLGIAFSGGVDSWALLKIL-SIYRKRLPFPIEMLALHIN----PGFEPENHFPLA 82

Query: 75  DVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           D   +  I   +                          R   + +  +  N T +   HT
Sbjct: 83  DWLHKHGIPGHLECLDIGPRAHTAENRTNSPCFWCSLQRRKRLFQLCQDYNLTHLAFGHT 142

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD + T +M    +   +GM          +   L + RP L   +  I        + 
Sbjct: 143 SDDLVNTFFMNLTTNGRIEGM----YPKESFFQGTLEVIRPLLWIDKFQIERAARAWELP 198

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
              +P  +     R  V++++  +      ++      LR   N
Sbjct: 199 VVPNPCPSAQNSRRGEVQQWLETLWGQDKRIRKNIVSALRRWQN 242


>gi|90578588|ref|ZP_01234398.1| putative ATPase [Vibrio angustum S14]
 gi|90439421|gb|EAS64602.1| putative ATPase [Vibrio angustum S14]
          Length = 297

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++   +    I F  ++V+  L +       ++
Sbjct: 32  NMIEENDVVMACISGGKDSFAMLDILLNL---KKAAPINFEVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVV-----SWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTA 125
             +  S L I + +V     S    K + G          R   +   A+ I AT I   
Sbjct: 87  LPEYFSSLNIPYYIVDKDTYSVVKEKVEEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHLDDIVETLFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLSYCREKDLIKYAEHKA 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|149925083|ref|ZP_01913396.1| PP-loop [Plesiocystis pacifica SIR-1]
 gi|149814054|gb|EDM73685.1| PP-loop [Plesiocystis pacifica SIR-1]
          Length = 287

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76
             H++VAVSGG DS  LL  L  +   R+    + +A+ +D  ++          ++ D 
Sbjct: 31  GDHVMVAVSGGKDSYTLLDLLV-LARSRAPIDFQITAVHLD-QVQPGYDGSPLRTWLEDF 88

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             R ++   +            + P     A     R  ++   A+ +    I   H  D
Sbjct: 89  RGRTKVDFEIAQEDTYTTVVDLTPPGKAYCAVCSRLRRGVLYNVAERLGCNKIALGHHRD 148

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LET+ M        + M      D + ++    + RP + C   DI            
Sbjct: 149 DALETLLMNLFYAGKLQAMPAKYTTDDVRFE----VIRPLIECAEADIIEHASWAKYPIL 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             P N     D   R ++RR + D+     +++      +R
Sbjct: 205 --PCNLCGSQDNLRREKMRRLIDDMATDNPHVRAVMLNAVR 243


>gi|326560307|gb|EGE10695.1| PP-loop family protein [Moraxella catarrhalis 7169]
 gi|326562977|gb|EGE13256.1| PP-loop family protein [Moraxella catarrhalis 46P47B1]
 gi|326566375|gb|EGE16525.1| PP-loop family protein [Moraxella catarrhalis BC1]
 gi|326570184|gb|EGE20229.1| PP-loop family protein [Moraxella catarrhalis BC8]
 gi|326570922|gb|EGE20946.1| PP-loop family protein [Moraxella catarrhalis BC7]
 gi|326575882|gb|EGE25805.1| PP-loop family protein [Moraxella catarrhalis CO72]
 gi|326576347|gb|EGE26256.1| PP-loop family protein [Moraxella catarrhalis O35E]
          Length = 377

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 84/253 (33%), Gaps = 27/253 (10%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           ++R F   ++    ++ V +SGG DS  LL  L  +   +    I F  ++V+    +  
Sbjct: 70  AIRDF--KMIEDGDVVMVCISGGKDSFTLLDILLFL---KRIAPIHFEVVAVNLDQKQPG 124

Query: 66  AKDEV--RYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKT 116
             +EV  RY+S+      I + ++                   +A    R   +   AK 
Sbjct: 125 FPEEVLPRYLSEQ----GIPYYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQ 180

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I AT +   H  DD L T ++      + K M    + D    D    + RP      +D
Sbjct: 181 IGATKVALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNILIRPLAYVAEKD 236

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I  +   +       P N     +    R  + D+         K+   +   + N    
Sbjct: 237 IIRYANYKKFPII--PCNLCGS-QENLQRAMINDMLREWDNAHPKRLASMFKALQNVAPS 293

Query: 237 LIPKYLTVHMRSI 249
            +          +
Sbjct: 294 QLADRNLFDFEHL 306


>gi|90420934|ref|ZP_01228839.1| ATPase of the PP-loop superfamily [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334909|gb|EAS48681.1| ATPase of the PP-loop superfamily [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 305

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 85/235 (36%), Gaps = 28/235 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
             A  LV +SGG DS  LL  L  +   R    +   A ++D   +       ++V  D 
Sbjct: 71  PGARWLVGLSGGKDSYALLALLSDLKY-RGLLPVDILACNLDQG-QPN---FPKHVLPDF 125

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            SR  I H +       V  +         A     R   +   A+      ++  H  D
Sbjct: 126 LSRYDIPHRIEYRDTYSVVTEKVPSNATYCALCSRLRRGNLYRIAREEGCEALVLGHHAD 185

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISW 188
           D LET +M            LS M   ++ D   L + RP +R   EDI  F        
Sbjct: 186 DCLETFFMNLFHGGR-----LSAMPAKLINDEGDLMVLRPLIRSVEEDIAKFSAAMKFPI 240

Query: 189 C-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
              D   + D  +R   ++ + D++        ++F   +  +  A+A + P +L
Sbjct: 241 IPCDLCGSQDGLQRNVTKQMIADLE--------RRFPGRKQVMLRALANVRPGHL 287


>gi|330255306|gb|AEC10400.1| cytoplasmic tRNA 2-thiolation protein 1 [Arabidopsis thaliana]
          Length = 358

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 21/222 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I  V    R       + +  SGG DS  L   L  + + R    +    +S+D  
Sbjct: 52  FEEEIHQVIVQNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHNYGLDLFLLSIDEG 110

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V     +  +   +VS+K+                         R   +
Sbjct: 111 ITGYRDDSLETVKRNEVQYGLPLKIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 170

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              A  +    ++T H  DD  ETV +   R    +         T   D  +   +PF 
Sbjct: 171 DRGAALLKVEKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFN 228

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                    +   + + +            R   R F++D++
Sbjct: 229 FT-------YAYFKKLDYFSTECIYSPNAYRGFAREFIKDLE 263


>gi|260778673|ref|ZP_05887565.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260604837|gb|EEX31132.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 310

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 87/267 (32%), Gaps = 42/267 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              I+V +SGG DS  +L  L S+        I FS I+V+          H L E    
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKS---APINFSLIAVNLDQKQPGFPGHILPE---- 92

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATL 121
                      L + + +V                   +     R  ++   A  + AT 
Sbjct: 93  -------YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTANELGATK 145

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSF 180
           I   H  DD LET+++        KG     M   ++ D     + RP   CR +DI  F
Sbjct: 146 IALGHHRDDILETLFLNMFHGGKMKG-----MPPKLVSDNGEHVVIRPLAYCREKDIIKF 200

Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
              R       P N        +R  +++ + D D          F+ ++  V + +A  
Sbjct: 201 SDMRGYPII--PCNLCGSQPNLQRQNIKQMLNDWDKRFPGRIESMFRAMQNVVPSHLADH 258

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264
                    +    I+   +  D   +
Sbjct: 259 ELFDFKSIDKDSGVINGGDIGFDKEEM 285


>gi|332184252|gb|AEE26506.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf.
           novicida 3523]
          Length = 253

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 20/227 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +++ +SGG DS GLL  LH ++ D+++  I     ++D   +     +   +
Sbjct: 20  KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 L +++ +       V            +     R   I  +AK      I+  H
Sbjct: 76  RKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++++ M        +G   S     I  D    + RP +  +  D+  F  + N 
Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFITQDGENTVIRPMVLVQEGDLIEFAKEENF 191

Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
                P N     +  +R +V++ ++D+ L    +       L   +
Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236


>gi|45358919|ref|NP_988476.1| PP-loop domain-containing protein [Methanococcus maripaludis S2]
 gi|45047785|emb|CAF30912.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 314

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 20/188 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + + +SGG DS+ +   L+     +        AI V+  +     D +      C   
Sbjct: 51  KVAMGLSGGKDSLVMAYLLNEYY--KQIPNSNLIAIMVNEGIEGYRTDGIDAAVKFCEEY 108

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            I + +V +K+                       +     R  +++  +       +   
Sbjct: 109 GIEYKIVHFKDYLGTNLDEIVKIAKEKNLTMNPCSFCGVIRRKILNRVSIEEKCDFLAIG 168

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD  + V M       +K   L+ +  ++ +   +   +P  +   +++        
Sbjct: 169 HNLDDVAQAVMMNYIEGDVKK---LAFLGKSLKHPKFVKRIKPLEKIPEDEVLLLAEMLE 225

Query: 186 ISWCEDPS 193
           + + + P 
Sbjct: 226 LKYHKSPC 233


>gi|119503153|ref|ZP_01625237.1| Pyridoxamine 5'-phosphate oxidase [marine gamma proteobacterium
           HTCC2080]
 gi|119460799|gb|EAW41890.1| Pyridoxamine 5'-phosphate oxidase [marine gamma proteobacterium
           HTCC2080]
          Length = 310

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 79/228 (34%), Gaps = 20/228 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  +L  L ++  D +    +  A+++D   +    +EV        
Sbjct: 66  GDRIMVCLSGGKDSYAMLDILLNL-RDCAPINFELIAVNLD-QKQPDFPEEVLP--SYLE 121

Query: 79  RLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L + + ++          +              R   +   A+ I A+ I   H  DD 
Sbjct: 122 ELGVPYYILERDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAEQIGASKIALGHHRDDI 181

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+++        K M    + D    D    + RP   C+  DI  +   +       
Sbjct: 182 VETLFLNLFFAGKLKAMPPKLLSD----DRKNVVIRPMAYCKEADIAQYAKAKAFPII-- 235

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           P N        +R  ++  ++  +          F+ LR    + +A 
Sbjct: 236 PCNLCGSQTNLQRQEIKHMLQGWEGQYPGRIETIFKALRSVSPSQLAD 283


>gi|167626278|ref|YP_001676778.1| hypothetical protein Fphi_0057 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|205830350|sp|B0TY35|TTCA1_FRAP2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|167596279|gb|ABZ86277.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 256

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 20/205 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +++ +SGG DS GLL  LH ++ D+++  I     ++D   +     +   +    
Sbjct: 29  KGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQLRKYL 84

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +++ +       V            +     R   I  +AK      I+  H  DD
Sbjct: 85  DNLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGHHRDD 144

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +E++ M        +G   S     I  D    + RP +  +  D+  F  + N     
Sbjct: 145 LIESLLMSIL----YQGQIKSMPPKFITQDGENTVIRPMVLVQERDLIEFAKEENFPII- 199

Query: 191 DPSNT---DDRFERVRVRRFVRDID 212
            P N     +  +R +V++ ++D+ 
Sbjct: 200 -PCNLCGSQENLKRKKVKKLIQDLA 223


>gi|15789499|ref|NP_279323.1| hypothetical protein VNG0190C [Halobacterium sp. NRC-1]
 gi|169235215|ref|YP_001688415.1| hypothetical protein OE1318F [Halobacterium salinarum R1]
 gi|10579837|gb|AAG18803.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726281|emb|CAP13062.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 320

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 67/186 (36%), Gaps = 19/186 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P   ++ +SGG DS  L   +      R   +++  A+++   +     + +   + + +
Sbjct: 53  PETWVIGLSGGKDSAVLTDLIEETF--RDDPRVELIALTIHEGIAGYRDESLDACTTLAA 110

Query: 79  RLRIAHSVVSWKNS------------KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              I H +V+++                     A     R  L++++A   +A  ++T H
Sbjct: 111 DRDIRHELVTYREEFDVAMDDVADDDPLDMAPCAYCGVFRRDLLAKYADEYDADKLLTGH 170

Query: 127 TFDDQLETVYMRSQRDYAEKG-----MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
             DD+ ET  M        +        L    D    D  +  ++P      +++  + 
Sbjct: 171 NLDDEAETALMNILEGNVTQIATHFDASLGSFDDRAELDAMIPRAKPLRDIPEKEVALYA 230

Query: 182 LQRNIS 187
             R++ 
Sbjct: 231 QLRDLP 236


>gi|254509242|ref|ZP_05121337.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus 16]
 gi|219547833|gb|EED24863.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus 16]
          Length = 265

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 20/189 (10%)

Query: 16  LVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++ 
Sbjct: 1   MIEEGDVVMACISGGKDSFAMLDILLNLQKA---APIKFDVVAVN--LDQKQPGFPEHIL 55

Query: 75  -DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D    L I + +V                         R   +   A+ I AT +   H
Sbjct: 56  PDYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALGH 115

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD +ET+++        K M           D    + RP   CR +D+  +   +  
Sbjct: 116 HMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKAF 171

Query: 187 SWCEDPSNT 195
                P N 
Sbjct: 172 PII--PCNL 178


>gi|271500278|ref|YP_003333303.1| PP-loop domain-containing protein [Dickeya dadantii Ech586]
 gi|270343833|gb|ACZ76598.1| PP-loop domain protein [Dickeya dadantii Ech586]
          Length = 313

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 88/270 (32%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V       + + + +V                   +     R  ++   A  + 
Sbjct: 84  --FPEHVLPQYLDSIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177
           AT I   H  DD L+T+++         G  L GM   ++ D     + RP   CR +DI
Sbjct: 142 ATKIALGHHRDDILQTLFLNMF-----YGGKLKGMPPKLVSDDGKHVVIRPLAYCREKDI 196

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             F   R       P N        +R  ++  +RD D          F  ++  V + +
Sbjct: 197 ERFAEARQFPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNAVPSHL 254

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                       +    +    L  D   +
Sbjct: 255 CDTALFDFKSIRQGSAVVDGGDLAFDREEM 284


>gi|168704844|ref|ZP_02737121.1| tRNA(Ile)-lysidine synthetase-like protein [Gemmata obscuriglobus
           UQM 2246]
          Length = 155

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E+ RF           +V VSGG+DS+ LL AL S         +      V+H
Sbjct: 1   MTRVLREARRFAAGRAGAG---IVGVSGGADSVALLRALRS-------ADVTLVVAHVNH 50

Query: 61  CLR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTI 117
            LR   +  +  +V ++C+ L +   V+S   +   P   L + AR  RY   +  A  +
Sbjct: 51  RLRGAESDGDEAFVRELCAGLGLECRVLSADVAALPPGDTLDSTARRVRYEFFARFAGAV 110

Query: 118 NA 119
            A
Sbjct: 111 GA 112


>gi|326563609|gb|EGE13861.1| PP-loop family protein [Moraxella catarrhalis 103P14B1]
 gi|326565320|gb|EGE15500.1| PP-loop family protein [Moraxella catarrhalis 12P80B1]
 gi|326573216|gb|EGE23184.1| PP-loop family protein [Moraxella catarrhalis 101P30B1]
          Length = 377

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 84/253 (33%), Gaps = 27/253 (10%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           ++R F   ++    ++ V +SGG DS  LL  L  +   +    I F  ++V+    +  
Sbjct: 70  AIRDF--KMIEDGDVVMVCISGGKDSFTLLDILLFL---KRIAPIHFEVVAVNLDQKQPG 124

Query: 66  AKDEV--RYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKT 116
             +EV  RY+S+      I + ++                   +A    R   +   AK 
Sbjct: 125 FPEEVLPRYLSEQ----GIPYYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQ 180

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I AT +   H  DD L T ++      + K M    + D    D    + RP      +D
Sbjct: 181 IGATKVALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNILIRPLAYVAEKD 236

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           I  +   +       P N     +    R  + D+         K+   +   + N    
Sbjct: 237 IIRYANYKKFPII--PCNLCGS-QENLQRAMINDMLREWDNAHPKRLASMFKALQNVAPS 293

Query: 237 LIPKYLTVHMRSI 249
            +          +
Sbjct: 294 QLADRNLFDFEHL 306


>gi|237810522|ref|YP_002894973.1| PP-loop family protein [Burkholderia pseudomallei MSHR346]
 gi|237504914|gb|ACQ97232.1| PP-loop family protein [Burkholderia pseudomallei MSHR346]
          Length = 331

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 92/256 (35%), Gaps = 33/256 (12%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     + +   ++V +SGG DS  LL  L  +  +R+       A++
Sbjct: 44  LFKRLVRQVGQAIGDYNMIEHGDKVMVCLSGGKDSYALLDILLRL-RERAPIDFDIVAVN 102

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 103 LD-QKQPG---FPEHVLPEYLTKIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 158

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD ++T+ +        KGM      D    D    + RP 
Sbjct: 159 LYRVAGELGATKIALGHHRDDIVQTLLLNMFYGGKLKGMPPKLQSD----DGKNIVIRPL 214

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  +   R       P N        +R  ++  +RD D        K+F   
Sbjct: 215 AYAKETDLEKYAELREFPII--PCNLCGSQPNLKRAEMKALIRDWD--------KRFPGR 264

Query: 227 RVKVNNAVAMLIPKYL 242
              + NA+A ++P +L
Sbjct: 265 VDNMFNALANVVPSHL 280


>gi|153839797|ref|ZP_01992464.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AQ3810]
 gi|149746686|gb|EDM57674.1| pyridoxamine 5'-phosphate oxidase [Vibrio parahaemolyticus AQ3810]
          Length = 297

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKF  ++V+  L +       ++
Sbjct: 32  NMIEECDVVMACISGGKDSFAMLDILLNLQKA---APIKFEVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT +   
Sbjct: 87  LPEYFETLNIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKLALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   ++
Sbjct: 147 HHMDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYAEHKD 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|299116896|emb|CBN75006.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 471

 Score = 91.5 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 82/260 (31%), Gaps = 38/260 (14%)

Query: 33  MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           M L  AL  +   R     +   I +D+  R  +  E  +V   C+R  +     +    
Sbjct: 1   MALCRALVHL---RPVYGFEVVGIHIDYGNRHESGREADFVQGWCARHGVVFYKRAIGEV 57

Query: 93  KPQTGL----MAAAREARY----ALISEHAKTINAT----------------------LI 122
           +            ARE R+    A +   +K  N+                        +
Sbjct: 58  RRGVTARDEYEKVAREIRFDAYKAALGGRSKDGNSDGNSDGNEGGGKEEKGEGGGGRPAV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           M  H   D  E V     +  +   + L+GM         + + RP L   ++ +  F  
Sbjct: 118 MFGHHEGDVEENVLTNLIKGCSI--LELAGMSPENTV-NGVRVWRPMLPFGKDVVYDFAH 174

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
           +  + + +D + +     R ++RR +  +        +        + ++ +  L+ + L
Sbjct: 175 KFGVPYFKDTTPSWS--TRGKLRRQLIPMMEDVFGSGVLGHLSAVARESDDLRDLVHREL 232

Query: 243 TVHMRSIIAISQDILNIDST 262
              +          L +D  
Sbjct: 233 FQPVWDKAVTQPLGLRLDVE 252


>gi|89076564|ref|ZP_01162872.1| putative ATPase [Photobacterium sp. SKA34]
 gi|89047756|gb|EAR53355.1| putative ATPase [Photobacterium sp. SKA34]
          Length = 297

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++   +    I F  ++V+  L +       ++
Sbjct: 32  NMIEENDVVMACISGGKDSFAMLDILLNL---KKAAPINFDVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVV-----SWKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTA 125
             +  S L I + +V     S    K + G          R   +   A  I AT I   
Sbjct: 87  LPEYFSSLNIPYYIVDKDTYSVVREKVEEGKTTCGLCSRLRRGTLYSFADKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHLDDIVETMFLNMFHGSRLKAM----PPKLRSDDGRNVVIRPLSYCREKDLIKYAEHKA 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|167395467|ref|XP_001741539.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165893874|gb|EDR21992.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 252

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 26/184 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRY 72
               I++  SGG DS  L+  L ++  + +F  I   A+ V      + L      ++  
Sbjct: 35  PHDRIIIGFSGGKDSFLLVHVLSTLSKNVNFP-IDVVAVHVTNPQVGYQL------DLEQ 87

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAA---------AREARYALISEHAKTINATLIM 123
              +C    +    +  +   P++ +  A           + R   + + AK    T I 
Sbjct: 88  SKTICESFGVPFISLQSEQM-PESDIEDADKSTTFCLNCGKNRRRALLKFAKENGFTSIA 146

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD  ET+ M         G   +           +   RP +      I+ +   
Sbjct: 147 LGHHMDDVAETLLMNQL----FCGCIATIPAQFTTEKYGVKFIRPLIEVPVVLIQEWTKY 202

Query: 184 RNIS 187
             + 
Sbjct: 203 IELP 206


>gi|95928919|ref|ZP_01311664.1| PP-loop [Desulfuromonas acetoxidans DSM 684]
 gi|95134820|gb|EAT16474.1| PP-loop [Desulfuromonas acetoxidans DSM 684]
          Length = 251

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 19/218 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRY 72
             ILVA+SGG DS  +L  L  +   R+    +   ++++                E  +
Sbjct: 28  DRILVAISGGKDSWTMLHVLKELCR-RAPIHYELVPVTINPGFDGFDTATITHYLTEQGF 86

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            + + +        V   + +P +   A     R   +   A+ +    +   H  DD +
Sbjct: 87  TAHLETTNG---EEVINAHLRPGSSYCAFCARLRRGALYTTAQKLGCNKVALGHHLDDHI 143

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWCED 191
           ET+ +         G  +S M   +L D     + RP +      I  +   RNI   + 
Sbjct: 144 ETLLLNQF----YSGT-ISAMSPKLLADNGEQTVIRPLVYVEEHLIDQWTALRNIPRVDC 198

Query: 192 PSNTDDRFE--RVRVRRFVRDIDLHALYLKMKKFQDLR 227
                 R +  R R++  + ++      +K      +R
Sbjct: 199 SCPMLVRRDQKRQRMKVLIEELQGEIPQIKNSLLNAMR 236


>gi|260432494|ref|ZP_05786465.1| PP-loop domain containing protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416322|gb|EEX09581.1| PP-loop domain containing protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 297

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
            P   LV +SGG DS  LL  L+ +   R    +   A ++D   +         + +  
Sbjct: 52  KPPRWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 107

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            R+ + H +       +            A     R   +   A+    + ++  H  DD
Sbjct: 108 ERMGVPHRIEYQDTYSIVVDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 167

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189
            LET +M         G   +     +  + +L++ RP       D   F    N     
Sbjct: 168 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEADCEKFAKAMNYPIIP 223

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
            D   + D  +R +V++ +   + ++   +   F+ L   
Sbjct: 224 CDLCGSQDGLQRQQVKQILDQWEKNSPGRRQVMFRALTNA 263


>gi|238753582|ref|ZP_04614944.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia ruckeri
           ATCC 29473]
 gi|238708134|gb|EEQ00490.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia ruckeri
           ATCC 29473]
          Length = 315

 Score = 91.5 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           S++    +++A  SGG DS  +L  L  +   +    IKF  ++V+  L +       ++
Sbjct: 50  SMIEENDVVMACMSGGKDSFAMLDILLGL---KKVAPIKFEVVAVN--LDQKQPGFPEHI 104

Query: 74  S-DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT I   
Sbjct: 105 LPEYFESLNIPYYIVDKDTYSVVKEKIPAGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 164

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   ++
Sbjct: 165 HHLDDIVETLFLNIFHGARLKAM----PPKLRSDDGRNVVIRPLAYCREKDLIEYAEHKD 220

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 221 FPII--PCNL 228


>gi|323698543|ref|ZP_08110455.1| PP-loop domain protein [Desulfovibrio sp. ND132]
 gi|323458475|gb|EGB14340.1| PP-loop domain protein [Desulfovibrio desulfuricans ND132]
          Length = 305

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 20/202 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E+     +   +   ILVA+SGG DS+ L++ L              + + +D  
Sbjct: 30  FTKQVETAIRREKMFTHEDRILVALSGGKDSLALMLELK-------LQGYDVTGLHIDLG 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK---------PQTGLMAAAREARYALISE 112
           +  +++   R V D C+   +   V                 +  + A   + +    + 
Sbjct: 83  IPNSSEKARRKVEDFCTLHGLPLRVFEMAAWGLPIPDVKKYVKRPVCAVCGKMKRHHFNR 142

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLR 171
            A      ++ T H  DD++  ++  + R        LS     +      +   +P  R
Sbjct: 143 IAVEEGFDVLATGHNLDDEVARLFANTLR---WDTAYLSDQGPVLPASEGFVRKVKPLFR 199

Query: 172 CRREDIRSFLLQRNISWCEDPS 193
               +  ++   + I    DP 
Sbjct: 200 LSEYETANYAFLKGIEIHSDPC 221


>gi|300723510|ref|YP_003712815.1| putative ATPase [Xenorhabdus nematophila ATCC 19061]
 gi|297630032|emb|CBJ90667.1| putative ATPase [Xenorhabdus nematophila ATCC 19061]
          Length = 297

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 65/190 (34%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        IKFS ++V+  L +       YV
Sbjct: 32  NMIEENDVVMACISGGKDSFAMLDILLNLQKA---APIKFSVVAVN--LDQKQPGFPEYV 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  L I + +V                         R   +   A+ I AT +   
Sbjct: 87  LPQYFESLDIPYYIVDKDTYSVVKEKVPEGKTTCGLCSRLRRGTLYSFAEKIGATKVALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR  D+  +   + 
Sbjct: 147 HHLDDIVETLFLNMFHGARMKAM----PPKLRSDDGRNVVIRPLAYCRETDLIDYAEHKA 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|90415029|ref|ZP_01222989.1| Putative ATPase [Photobacterium profundum 3TCK]
 gi|90323843|gb|EAS40449.1| Putative ATPase [Photobacterium profundum 3TCK]
          Length = 299

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 23/187 (12%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++  + +++A  SGG DS  +L  L  +        IKF  I+V+  L +       ++
Sbjct: 32  NMIEESDVVMACISGGKDSFAMLDILLGLQKS---APIKFKVIAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT I   
Sbjct: 87  LPNYFESLGIPYYIVDKDTYSVVREKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K    S        D    + RP   CR +D+ ++     
Sbjct: 147 HHMDDMVETMFLNMFYGSRLK----SMPPKLRSDDQRNVVIRPLTYCREKDLIAYAE--- 199

Query: 186 ISWCEDP 192
             + E P
Sbjct: 200 --YREYP 204


>gi|283852152|ref|ZP_06369425.1| PP-loop domain protein [Desulfovibrio sp. FW1012B]
 gi|283572378|gb|EFC20365.1| PP-loop domain protein [Desulfovibrio sp. FW1012B]
          Length = 302

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 20/198 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E+       +     +LVAVSGG DS+ L+  L  +  D          + V   
Sbjct: 30  FRKQVETAIRRHAMIQPGEKVLVAVSGGKDSLALMRVLSDLGHD-------VDGLHVHLG 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           + +++          C        V+                +  + A   + +    + 
Sbjct: 83  IPDSSDPVCERTESYCRDNGFRLHVLRTAEVGLAIPKVKDAVRRPICAVCGKIKRHYFNR 142

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLR 171
            A       + T H  DD++  ++    R        L     T+  +   +   +P  R
Sbjct: 143 FAYENGYAALATGHNLDDEVARLFANVLR---WDATYLGSQGPTLPAEGRFVRKIKPLYR 199

Query: 172 CRREDIRSFLLQRNISWC 189
               +  ++   + I   
Sbjct: 200 VTEFETAAYCFLKGIDHW 217


>gi|89068158|ref|ZP_01155575.1| hypothetical protein OG2516_08252 [Oceanicola granulosus HTCC2516]
 gi|89046397|gb|EAR52454.1| hypothetical protein OG2516_08252 [Oceanicola granulosus HTCC2516]
          Length = 283

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 87/250 (34%), Gaps = 19/250 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL  LH +   R    ++  A ++D   +         + +  
Sbjct: 44  RGAKWLVCLSGGKDSYTLLAVLHELQ-WRGLLPVELLACNLD---QGQPGFPATVLPEFL 99

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            ++ + H +       +            A     R   +   A+    + ++  H  DD
Sbjct: 100 EKMGVPHRIEYQDTYSIVVDKVPAGRTFCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 159

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189
            LET +M         G   +     +  + +L++ RP       D   F    N     
Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEADCERFASAMNYPIIP 215

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            D   + D  +R +V++ +   + ++   +   F   R  +N   + L+   L       
Sbjct: 216 CDLCGSQDGLQRQQVKQILDGWEKNSPGRRQVMF---RALMNARPSHLLDPKLFDFAGLT 272

Query: 250 IAISQDILNI 259
               +DIL++
Sbjct: 273 RGTGEDILDL 282


>gi|312281579|dbj|BAJ33655.1| unnamed protein product [Thellungiella halophila]
          Length = 253

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 14/190 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I  V    R       + +  SGG DS  L   L  + + R    +    +S+D  
Sbjct: 45  FEEEIHQVIVVNRLFKSGERVAIGASGGKDSTVLAYVLSEL-NRRHSYGLDLFLLSIDEG 103

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALI 110
           +     D +  V     +  +   ++S+K+                         R   +
Sbjct: 104 ITGYRDDSLETVKRNELQYGLPLQILSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQAL 163

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              A  +    ++T H  DD  ETV +   R    +         T   D  +   +PF 
Sbjct: 164 DRGAALLKVDKLVTGHNADDIAETVLLNILRGDIARLS--RCTSITTGEDGPIPRCKPFK 221

Query: 171 RCRREDIRSF 180
               ++I  +
Sbjct: 222 YTYEKEIVIY 231


>gi|170290828|ref|YP_001737644.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174908|gb|ACB07961.1| tRNA(Ile)-lysidine synthase MesJ [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 328

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 22/191 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRETAKDEVR 71
           R L+    ++VA SGG DS   L+       +     +K  ++++D     R ++   + 
Sbjct: 42  RELLPGDKVMVAHSGGKDSSLALLLTKEFSDEVRELDLKVISVTLDEGTLYRRSS---IE 98

Query: 72  YVSDVCSRLRIAHSVVSWKN--------------SKPQTGLMAAAREARYALISEHAKTI 117
               +  RLR+ H  +  ++                 +          R  +++  A+ I
Sbjct: 99  LARKLAERLRVRHLTIQMRDILGFSLEDLRLAIPKGWKRNACTYCGVLRRQILNAVAREI 158

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRRED 176
            AT+++T H  DD ++T  M   R  A     +  M     Y+  L    RP       +
Sbjct: 159 GATVLVTGHNLDDLIQTSIMNLVRGDANAL--VKTMRHERKYEEGLVPRVRPLKYVYERE 216

Query: 177 IRSFLLQRNIS 187
           I S ++   I 
Sbjct: 217 IASLVVALGIP 227


>gi|222618797|gb|EEE54929.1| hypothetical protein OsJ_02482 [Oryza sativa Japonica Group]
          Length = 501

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 21/212 (9%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +  SGG DS  L   L  + + R    +    +SVD  +     D +  V
Sbjct: 200 NLFKPGDRVAIGASGGKDSTVLAYVLSEL-NHRHKYCLDLFLLSVDEGITGYRDDSLETV 258

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   ++S+K+           +             R   +   A  +    I
Sbjct: 259 KRNEIQYGLPLKIISYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKI 318

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR--SF 180
           +T H  DD  ETV +   R    +    + +  T   D  +   +PF     ++I    +
Sbjct: 319 VTGHNADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVIYPY 376

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
               +I  C    N    + R   R F++D++
Sbjct: 377 YAISHIFSCIYSPNA---Y-RGFAREFIKDLE 404


>gi|239624850|ref|ZP_04667881.1| PP-loop domain-containing protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521236|gb|EEQ61102.1| PP-loop domain-containing protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 290

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 21/191 (10%)

Query: 10  RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           R FVR L           + V +SGG DSM L   L  +    S  +     I +D    
Sbjct: 24  RPFVRGLQEYKMIQDGDKVAVCISGGKDSMLLAKCLQQLKRQ-SGTEFGLEFIVMDPGYH 82

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
              +   + + D  + + I   +                       R   +  HA+ +  
Sbjct: 83  PDNR---KLIEDNAALMNIPVRIFDSDIFDIVVDVDQSPCYLCARMRRGYLYAHARELGC 139

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDI 177
             I   H FDD +ET+ M         G  ++ M   +       + + RP    + EDI
Sbjct: 140 NKIALGHHFDDVIETILMGIL-----YGGQINTMMPKLHSTNFEGMELIRPLYFVKEEDI 194

Query: 178 RSFLLQRNISW 188
             +     + +
Sbjct: 195 LDWKDYNGLHF 205


>gi|145298953|ref|YP_001141794.1| C32 tRNA thiolase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|205830594|sp|A4SMC4|TTCA_AERS4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|142851725|gb|ABO90046.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 302

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 77/205 (37%), Gaps = 22/205 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+ +          A+++D   +        +V  +  
Sbjct: 37  GDKIMVCLSGGKDSFAMLDILMSLKASAPI-HFDLVAVNLD-QKQPG---FPEHVLPEYL 91

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + L +   +V        K+  P+     A     R  ++   A+ +  T I   H  DD
Sbjct: 92  ATLGVDFKIVEEDTYSIVKDKVPEGKTTCALCSRLRRGILYRTAQELGCTKIALGHHRDD 151

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++        K    S     +  D    + RP   C+ +D+  +   +      
Sbjct: 152 ILETLFLNMFYGGKLK----SMPPKLVSDDGKNVVIRPLAYCKEKDLVRYAEVKAFPII- 206

Query: 191 DPSNT---DDRFERVRVRRFVRDID 212
            P N     +  +R  +++ ++D D
Sbjct: 207 -PCNLCGSQENLQRQAIKQMMQDWD 230


>gi|187479696|ref|YP_787721.1| C32 tRNA thiolase [Bordetella avium 197N]
 gi|123513648|sp|Q2KU24|TTCA_BORA1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|115424283|emb|CAJ50836.1| conserved hypothetical protein [Bordetella avium 197N]
          Length = 315

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 78/222 (35%), Gaps = 20/222 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++   R+  + +  A+++D   +     ++    +  S
Sbjct: 46  GDRVMVCLSGGKDSYAMLDILMALQK-RAPFRFELIAVNLD-QKQPGFPADILP--NYLS 101

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L +   +       +  +       + +     R  ++   A  + AT I   H  DD 
Sbjct: 102 SLGVPFHIETQDTYSIVTRVLAEGKTMCSLCSRLRRGILYRVADELGATKIALGHHRDDI 161

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L T+++        KGM        +  D    + RP       D+ ++   +       
Sbjct: 162 LGTLFLNLFYGGKLKGM----PPKLVSDDGRHTVIRPLAYIAETDLIAYAELKQFPII-- 215

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P N     +  +R  V R V++ D          F  L   V
Sbjct: 216 PCNLCGSQENLKRKEVSRMVQEWDRKFPGRSWNVFNALSRVV 257


>gi|71279129|ref|YP_269674.1| PP-loop family protein [Colwellia psychrerythraea 34H]
 gi|123632054|sp|Q47ZU5|TTCA_COLP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|71144869|gb|AAZ25342.1| PP-loop family protein [Colwellia psychrerythraea 34H]
          Length = 314

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 87/249 (34%), Gaps = 31/249 (12%)

Query: 1   MFLSPIESVRFFVRSLVY-------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF 53
            F+   + +R  V   +           ++V +SGG DS  +L  L  +L + +      
Sbjct: 20  QFIKLEKKLRRNVGQAIAQYNMIEDGDKVMVCLSGGKDSYAMLSILM-LLKESAPIHFDI 78

Query: 54  SAISVDHCLRETAKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREA 105
            A+++D   +        ++  +   +L I + +V                   +     
Sbjct: 79  IAVNLD-QKQPG---FPEHILPEYLDKLGIEYHIVEEDTYGIVKEKVPEGKTTCSLCSRL 134

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW- 164
           R A++ + AK I AT I   H  DD +ET+ +         G  +  M   ++ D     
Sbjct: 135 RRAVLYKAAKKIGATKIALGHHRDDMIETLMLNMF-----YGGKMKAMPAKLVSDNGEHV 189

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMK 221
           + RP   C+  ++  +   ++      P N        +R  ++R + D           
Sbjct: 190 VIRPLAFCKESELIQYSELKHFPII--PCNLCGSQPNMQRQNIKRMLNDWHDQFPGRIES 247

Query: 222 KFQDLRVKV 230
            F  ++  V
Sbjct: 248 MFTAMQNVV 256


>gi|167567472|ref|ZP_02360388.1| PP-loop family protein [Burkholderia oklahomensis EO147]
          Length = 331

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 30/236 (12%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
           +   ++V +SGG DS  LL  L  +  +R+       A+++D   +        +V  + 
Sbjct: 64  HGDKVMVCLSGGKDSYALLDVLLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEY 118

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + + +   +       +  +         +     R  ++   A  + AT I   H  D
Sbjct: 119 LATIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRD 178

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D L+T+ +        KGM      D    D    + RP    +  D+  +   R     
Sbjct: 179 DILQTLLLNLFYGGKLKGMPPKLQSD----DGRNVVIRPLAYVKETDLEKYAELRAFPII 234

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
             P N        +R  ++  +R  D        K+F      + NA+A ++P +L
Sbjct: 235 --PCNLCGSQPNLKRAEMKALIRQWD--------KRFPGRVENMFNALANVVPSHL 280


>gi|326392440|ref|ZP_08213837.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325991517|gb|EGD50112.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 87

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 1  MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
          M    I +++ + + +     I++ VSGG DS+ +L  L+++   +    +K   + V+H
Sbjct: 1  MIDKVISTIKRY-KMIEANDKIVMGVSGGPDSLCMLDILYNL---KDLFNLKLYVVHVNH 56

Query: 61 CLR-ETAKDEVRYVSDVCSRLRIAHS 85
           +R E AK + ++V D+C +L++   
Sbjct: 57 MIRGEEAKRDAQFVEDMCRKLKLPFF 82


>gi|269139128|ref|YP_003295829.1| C32 tRNA thiolase [Edwardsiella tarda EIB202]
 gi|267984789|gb|ACY84618.1| C32 tRNA thiolase [Edwardsiella tarda EIB202]
 gi|304559054|gb|ADM41718.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Edwardsiella tarda
           FL6-60]
          Length = 311

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 19/267 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     ++V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRVMVCLSGGKDSYTMLEILRNLQQSAPV-NFTLVAVNLD-QKQPGF 84

Query: 67  KDEV--RYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            + V   Y+       RI       +V  K  + +T   +     R  ++   A  +   
Sbjct: 85  PETVLPAYLETQGVEYRIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTANELRCN 143

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I   H  DD LET+++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 144 KIALGHHRDDMLETLFLNMFYGGKLKGMPPKLMSD----DGQHIVIRPLAYCREKDIERF 199

Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
              +       P N        +R  ++  +RD D          F  ++  V + +A  
Sbjct: 200 AAAKAFPII--PCNLCGSQPNLQRQVIKEMLRDWDKRYPGRIETMFSAMQNVVPSHLADG 257

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264
                    +    I    L  D   +
Sbjct: 258 ALFDFKGLQQGGEIIDGGDLAFDRQTI 284


>gi|225023480|ref|ZP_03712672.1| hypothetical protein EIKCOROL_00338 [Eikenella corrodens ATCC
           23834]
 gi|224943720|gb|EEG24929.1| hypothetical protein EIKCOROL_00338 [Eikenella corrodens ATCC
           23834]
          Length = 317

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 82/256 (32%), Gaps = 24/256 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L  + +       +  A+++D   +        +V  +  
Sbjct: 35  GDKIMVCLSGGKDSYALLDILRHLQASAPI-NFELVAVNLD-QKQPG---FPEHVLPEYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + + +   +V         +         +     R  ++   AK +  T I   H  DD
Sbjct: 90  TSIGVPFKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 ILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAEIKQFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V   ++D D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVVGEMLKDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLQ 262

Query: 247 RSIIAISQDILNIDST 262
           R         L  DS 
Sbjct: 263 RGQTLKHGGDLAFDSE 278


>gi|124265747|ref|YP_001019751.1| C32 tRNA thiolase [Methylibium petroleiphilum PM1]
 gi|205830603|sp|A2SD77|TTCA_METPP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|124258522|gb|ABM93516.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 313

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 17/180 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V VSGG DS  LL  L ++        I FS ++V+  L +   D   +V  + 
Sbjct: 45  PGDKLMVCVSGGKDSYALLDILLNLQQR---APIDFSLVAVN--LDQKQPDFPEHVLPEY 99

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +   +   +       +  +       + +     R  ++   A  + AT I   H  D
Sbjct: 100 LASRGVPFHIENQDTYSIVKRVVPEGKTMCSLCSRLRRGILYRVAGELGATKIALGHHRD 159

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D L+T+++        KGM        +  D    + RP       D+ ++   R     
Sbjct: 160 DMLQTLFLNMFFGAKLKGM----PPKLVSDDGRHVVIRPLAYVPEHDLEAWAAHRQFPII 215


>gi|82701643|ref|YP_411209.1| hypothetical protein Nmul_A0509 [Nitrosospira multiformis ATCC
           25196]
 gi|123545035|sp|Q2YBQ4|TTCA_NITMU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|82409708|gb|ABB73817.1| tRNA s(2)C-32 sulfurtransferase [Nitrosospira multiformis ATCC
           25196]
          Length = 298

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 75/206 (36%), Gaps = 22/206 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS  LL  L S+ +  +  + +  A+++D   +        +V  + 
Sbjct: 39  SGDRVMVCLSGGKDSYALLDILRSLQA-HAATQFELIAVNLD-QKQPG---FPEHVLPNY 93

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + + +   +V                   +     R  ++   A  + AT I   H  D
Sbjct: 94  LTSIGMPFRIVEQDTYSVVKRLIPEGKTTCSLCSRLRRGVLYRVADELGATKIALGHHRD 153

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISW 188
           D LET+ +            L  M   ++ D    I  RP   C+ +D+ ++    N   
Sbjct: 154 DILETLLLNLFHGGK-----LKTMPPKLVSDDGKHIVIRPLAYCKEKDLAAYAEMENFPI 208

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLH 214
              P N     ++   R+ V+++   
Sbjct: 209 I--PCNLCGS-QKNMQRQVVKEMLQQ 231


>gi|89094039|ref|ZP_01166983.1| hypothetical protein MED92_02041 [Oceanospirillum sp. MED92]
 gi|89081713|gb|EAR60941.1| hypothetical protein MED92_02041 [Oceanospirillum sp. MED92]
          Length = 320

 Score = 90.7 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 81/243 (33%), Gaps = 24/243 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76
              ++V +SGG DS  +L  L ++         +  A+++D   +    ++V   Y+  +
Sbjct: 53  GDKVMVCLSGGKDSYAMLDILMNLQRSAPV-NFELVAVNLD-QKQPGFPEDVLPAYLESI 110

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                +   +       V  +         A     R   +   A+ I A  I   H  D
Sbjct: 111 ----GVPFHILERDTYSVVKEVVPEGKTTCALCSRLRRGSLYGFAEEIGANKIALGHHRD 166

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LET+++        K    S     +  D    + RP    R +DI +F   +     
Sbjct: 167 DILETLFLNMFYGGKLK----SMPPKLVSDDGKNMVIRPLAYSREKDIAAFAELKGFPII 222

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N     +  +R  ++  ++D D          F+ L+  V + +A           
Sbjct: 223 --PCNLCGSQENLQRQVIKEMLQDWDRRFPGRIETMFRSLQHVVPSHLADTALFDFKGLQ 280

Query: 247 RSI 249
              
Sbjct: 281 HGF 283


>gi|253742438|gb|EES99271.1| PP family ATPase [Giardia intestinalis ATCC 50581]
          Length = 301

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 76/226 (33%), Gaps = 25/226 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDVC 77
             + +A+SGG DS  LL  L  +        +KF+ I  +V+        +  +    + 
Sbjct: 64  DRVALALSGGKDSWTLLHILLDIAKR---SPVKFTVIPMTVETGYPGFDANVAKLTQYIK 120

Query: 78  SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L I H V+          N +  T   +     R   +    + +    +   H  +D
Sbjct: 121 ENLGIEHVVIKETFPEIIDGNLRQGTSNCSFCARLRRGTLYTRCQKLGINKLALGHHRED 180

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             E++ M    +      G          + N+ + RP + C  ED  ++          
Sbjct: 181 VNESLLMSLFFNGKLWTQGPIIHNA----EKNITLIRPMVFCAEEDTIAYARHSTFPIVT 236

Query: 191 --DPSNTDDRFERVRV-------RRFVRDIDLHALYLKMKKFQDLR 227
              P   +    R ++       R+++ DI    L    + FQ ++
Sbjct: 237 CNCPHEGNKEHRRYKIKQTILAMRQWIPDIQRSILAGATELFQVMQ 282


>gi|294878153|ref|XP_002768284.1| hypothetical protein Pmar_PMAR025097 [Perkinsus marinus ATCC 50983]
 gi|239870532|gb|EER01002.1| hypothetical protein Pmar_PMAR025097 [Perkinsus marinus ATCC 50983]
          Length = 484

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 82/235 (34%), Gaps = 23/235 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDEVRYVSDV 76
           +++++SGG DS   LI L ++   R     K  A+ + +      L + A+ E+  V+ +
Sbjct: 95  VVLSLSGGVDSSSTLILLCALRYHRVV-DWKLRALYMGYSANRENL-DEARSELNLVAWL 152

Query: 77  CSRLRIAHSVVSWKNSKPQTGL------------MAAAREARYALISEHAKTINATLIMT 124
           C +  +     +    +P                    +  R+ + S  +   N  +++ 
Sbjct: 153 CEQCNVQLFAFNIDLPRPHGSEGTTSSGVTRDEYETQTKTIRFRMYSLASGDENC-VVVL 211

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS-RPFLRCRREDIRSFLLQ 183
            H  DD  E    +  R +    M            L+  I  RP +  R+        +
Sbjct: 212 GHHQDDVDENRLEQLSRGHVMGDMDGMHRVRESPPGLDRCIVCRPLIHERKSTFVKVATE 271

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +I +  D +       R   R+ +  + L      M +       +++  A LI
Sbjct: 272 AHIPYVHDSTPAWS--VRGITRKALDAVLLDDNTTAMHQILADVACMSSRAAELI 324


>gi|160940060|ref|ZP_02087405.1| hypothetical protein CLOBOL_04949 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436640|gb|EDP14407.1| hypothetical protein CLOBOL_04949 [Clostridium bolteae ATCC
           BAA-613]
          Length = 290

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 62/191 (32%), Gaps = 21/191 (10%)

Query: 10  RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           R FV+ L           + V +SGG DSM L   L  +    S    +   I +D    
Sbjct: 24  RPFVKGLQDYEMIKDGDKVAVCISGGKDSMLLAKCLQQLKRQ-SRTDFELEFIVMDPGYN 82

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
              +     + D  + + I   +            +          R   +  HA+ +  
Sbjct: 83  PDNR---NLIEDNAALMNIPVRIFDSDIFDIVVDVEQSPCYLCARMRRGYLYAHARELGC 139

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDI 177
             I   H FDD +ET+ M         G  ++ M   +       + + RP    + EDI
Sbjct: 140 NKIALGHHFDDVIETILMGIL-----YGGQINTMMPKLHSTNFQGMELIRPLYYVKEEDI 194

Query: 178 RSFLLQRNISW 188
             +     + +
Sbjct: 195 LDWKDYNGLHF 205


>gi|126728219|ref|ZP_01744035.1| ATPase of the PP superfamily protein [Sagittula stellata E-37]
 gi|126711184|gb|EBA10234.1| ATPase of the PP superfamily protein [Sagittula stellata E-37]
          Length = 283

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 18/192 (9%)

Query: 4   SPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +++VR  V         A  LV +SGG DS  LL  LH +   R    ++  A ++D 
Sbjct: 27  RLVQNVREAVDQYGMVQEGARWLVCLSGGKDSYTLLAILHEL-KWRGLLPVELLACNLD- 84

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113
             +         + +   ++++ H +       +            A     R   +   
Sbjct: 85  --QGQPGFPATVLPEFLEKMQVPHRIEYQNTYSIVMDKVPQGRTYCALCSRLRRGHLYRI 142

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+    + ++  H  DD LET +M         G   +     +  + +L++ RP     
Sbjct: 143 AREEGCSAVVLGHHRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVA 198

Query: 174 REDIRSFLLQRN 185
             D   F    N
Sbjct: 199 EADCDKFARDMN 210


>gi|145590171|ref|YP_001156768.1| PP-loop domain-containing protein [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|205830610|sp|A4T0E0|TTCA_POLSQ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|145048577|gb|ABP35204.1| tRNA s(2)C-32 sulfurtransferase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 302

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 71/217 (32%), Gaps = 16/217 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V VSGG DS  +L  L  +  +R+    +  A+++D   +     E     +   
Sbjct: 35  GDKVMVCVSGGKDSYAMLDILMKL-RERAPIDFEIVAVNLD-QKQPNFPAETLP--NYLR 90

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L I   +       +  +               R  ++   A  + AT I   H  DD 
Sbjct: 91  SLGIPFHIEEQDTYSIVKRVIPEGKTTCGLCSRLRRGILYRVADELGATKIALGHHRDDI 150

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190
           LET+ +        KGM           D    + RP      + +  + +  N      
Sbjct: 151 LETLMLNMFYAGKLKGM----PPKLRSDDGKHIVIRPLAYVPEKLLERYAIDMNFPIIPC 206

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           D   +    +R  ++  +RD +          F+ + 
Sbjct: 207 DLCGSQPNLQRQVMKEMLRDWEKKHPGRVENLFRSMH 243


>gi|307266583|ref|ZP_07548114.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326391761|ref|ZP_08213282.1| tRNA methyl transferase-like protein [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306918380|gb|EFN48623.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325992199|gb|EGD50670.1| tRNA methyl transferase-like protein [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 297

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 24/214 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  +       + L     ++VA+SGG DS+     L  +  +     I          
Sbjct: 30  FMRQVAKTIEKYKMLPPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL-------G 82

Query: 62  LRET--AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALI 110
           + E   +      V + C    I   +VS K          +K Q  + A     +  L+
Sbjct: 83  IEENNFSSRSREVVENFCKENDIPLEIVSLKEKFRKGIPDVAKHQDRICALCGVTKRHLM 142

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +E+  ++ A  + T HT DD  + +     R D      G   + +   +       +P 
Sbjct: 143 NEYTLSVKADALATGHTLDDMAKLLLANLFRWDLHHLSKGTPVLPEEPGFARK---IKPL 199

Query: 170 LRCRREDIRSFLLQRNISWCE--DPSNTDDRFER 201
                E+I +F    NI       P + + ++ R
Sbjct: 200 AFQAEEEIIAFAKLHNIKPVTAVCPYSREAKYTR 233


>gi|54309027|ref|YP_130047.1| putative ATPase [Photobacterium profundum SS9]
 gi|81399572|sp|Q6LR31|TTCA_PHOPR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|46913459|emb|CAG20245.1| Putative ATPase [Photobacterium profundum SS9]
          Length = 301

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++  + +++A  SGG DS  +L  L  +        I F  I+V+  L +       ++
Sbjct: 34  NMIEESDVVMACISGGKDSFAMLDILLGLQKS---APINFKVIAVN--LDQKQPGFPEHI 88

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +    L I + +V                         R   +   A+ I AT I   
Sbjct: 89  LPNYFESLGIPYYIVDKDTYSVVREKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 148

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K    S        D    + RP   CR +D+ ++     
Sbjct: 149 HHMDDMVETMFLNMFYGSRLK----SMPPKLRSDDQRNVVIRPLTYCREKDLIAYAE--- 201

Query: 186 ISWCEDP 192
             + E P
Sbjct: 202 --YREYP 206


>gi|331006500|ref|ZP_08329800.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium
           IMCC1989]
 gi|330419700|gb|EGG94066.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium
           IMCC1989]
          Length = 330

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 84/253 (33%), Gaps = 20/253 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++         +  A+++D   +    +E+    +   
Sbjct: 53  GDKVMVCLSGGKDSYAMLDILLNLQKSAPV-NFELVAVNMD-QKQPGFPEEILP--NYLE 108

Query: 79  RLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L + + +V          L              R   +   A+ I AT +   H  DD 
Sbjct: 109 SLGVPYYIVEKDTYTVVKSLVPEGKTTCGVCSRLRRGTLYGFAEEIGATKVALGHHKDDI 168

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+++        K M    + D    D    I RP   CR  DI  + + +       
Sbjct: 169 VETLFLNMFHGGRLKAMPPKLLSD----DKRNIIIRPMAFCRESDIARYAVYQQFPII-- 222

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N     +  +R  V+  ++  D          F  +     + +A       T     
Sbjct: 223 PCNLCGSQENLQRQSVKSMLQQWDKDTPGRTDNIFSAISKISPSQLADKDLFDFTHLTID 282

Query: 249 IIAISQDILNIDS 261
            ++  +  L  + 
Sbjct: 283 RLSEDKKPLKFED 295


>gi|257454112|ref|ZP_05619386.1| PP-loop domain protein [Enhydrobacter aerosaccus SK60]
 gi|257448590|gb|EEV23559.1| PP-loop domain protein [Enhydrobacter aerosaccus SK60]
          Length = 407

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 91/270 (33%), Gaps = 28/270 (10%)

Query: 2   FLSPIESVRFFVR------SLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54
           F    + +R  V       +++    ++ V +SGG DS  LL  L  +   +    I+F 
Sbjct: 80  FRKLQKKLRKLVSWAIRDYNMIEDGDVVMVCISGGKDSFTLLDILLFL---KKIAPIQFD 136

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARY 107
            I+V+   ++        + +  ++  I + +       V  +         +A    R 
Sbjct: 137 VIAVN-LDQKQPDYPEDILPNYLTKHGIPYYILEKDTYSVVKQIVPEGKTYCSACSRLRR 195

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             +   AK I AT +   H  DD + T ++      + K M    + D    D    + R
Sbjct: 196 GSLYGFAKQIGATKVALGHHRDDIMATFFLNLFHGGSLKAMPPKLLSD----DGQNILIR 251

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
           P      +DI  +   +       P N     +  +R  +   +R  D          F 
Sbjct: 252 PLAYVEEKDIIKYANYKQFPII--PCNLCGSQENLQRAMINDMLRAWDQQYPNRLDSIFG 309

Query: 225 DLR-VKVNNAVAMLIPKYLTVHMRSIIAIS 253
            ++ V  +      +  +  + ++    I 
Sbjct: 310 AMQNVAPSQLADRELFDFENLQLKRDEHIR 339


>gi|18314221|ref|NP_560888.1| hypothetical protein PAE3646 [Pyrobaculum aerophilum str. IM2]
 gi|18161815|gb|AAL65070.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 298

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 24/183 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VAVSGG DS   L  L   +        +  A+ ++    +T+      V  + +RL 
Sbjct: 38  IYVAVSGGKDSCAALALLKEYVDSAKI-DAEVKALHINLGF-KTSDRVEEAVKTLANRLG 95

Query: 82  IAHSVVSWKNSKPQTGLMAAARE------------ARYALISEHAKTINATLIMTAHTFD 129
           ++  VV  K+      + AAAR              RY L+++  + + AT + T H   
Sbjct: 96  VSLHVVHAKDY---LDIEAAARATGRPICSVCGAVKRY-LLNKVPRELGATKVATGHHAH 151

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRNIS 187
           D          ++ A +    +      L    L +   RP +  R E+         + 
Sbjct: 152 D----FLAYYFKNLAGRHFEWNFKILPRLDGQGLILTRIRPLIFARPEENEELCRSLGLP 207

Query: 188 WCE 190
           + E
Sbjct: 208 FSE 210


>gi|119871537|ref|YP_929544.1| PP-loop domain-containing protein [Pyrobaculum islandicum DSM 4184]
 gi|119672945|gb|ABL87201.1| PP-loop domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 304

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 24/180 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VAVSGG DS   L  L   + +      +  A  ++   R +AK E   V  +   L 
Sbjct: 36  IYVAVSGGKDSCAALALLKEYIEEYRI-DAEVRAFHINLGFRTSAKIEEA-VRTLAEALG 93

Query: 82  IAHSVVSWKNSKPQTGLMAAARE------------ARYALISEHAKTINATLIMTAHTFD 129
           +   VV  ++      + AAAR              RY L+++  + + AT + T H   
Sbjct: 94  VGIHVVYARDY---LDIEAAARATGRPICSVCGAVKRY-LMNKVPRELGATKVATGHHAY 149

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRNIS 187
           D          ++   +    +      +    L +   RP +  R E+   +  +R + 
Sbjct: 150 D----FLTYYIKNLVGRNHLWNFKILPRVEGGGLLVTKIRPLIFARPEENEEYCRRRGLP 205


>gi|241668719|ref|ZP_04756297.1| hypothetical protein FphipA2_08125 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877251|ref|ZP_05249961.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843272|gb|EET21686.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 252

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 77/205 (37%), Gaps = 20/205 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +++ +SGG DS GLL  LH ++ D+++  I     ++D   +     +   +    
Sbjct: 29  KGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSKLRAYL 84

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +++ +       V            +     R   I  +AK      I+  H  DD
Sbjct: 85  DDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGHHRDD 144

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +E++ M        +G   S     I  D    + RP +  +  D+  F  + N     
Sbjct: 145 LIESLLMSIL----YQGQIKSMPPKFITQDGENTVIRPMVLVQERDLIEFAKEENFPII- 199

Query: 191 DPSNT---DDRFERVRVRRFVRDID 212
            P N     +  +R +V++ ++D+ 
Sbjct: 200 -PCNLCGSQENLKRKKVKKLIQDLA 223


>gi|71900609|ref|ZP_00682735.1| PP-loop [Xylella fastidiosa Ann-1]
 gi|71729603|gb|EAO31708.1| PP-loop [Xylella fastidiosa Ann-1]
          Length = 299

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
             I+V +SGG DS  LL  L  + +       + +A+++D   +       ++V  +  S
Sbjct: 49  DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 103

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + +       V  +       L A     R   +  +A+T   T I   H  DD 
Sbjct: 104 SIGVPYHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 163

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           + T +M            LSGM   +  D     + RP       DI ++   R      
Sbjct: 164 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 217

Query: 191 DPSNT 195
            P N 
Sbjct: 218 -PCNL 221


>gi|291535866|emb|CBL08978.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Roseburia intestinalis M50/1]
          Length = 412

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DSM LL  L   L            + ++    E   +  R + +   
Sbjct: 172 GDKIAVCISGGKDSM-LLAKLFQELYRHGKRNFGLVFLCMNPGYNEE--NW-RIIQENAK 227

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L I  +    +     ++            R   +   AK +    I   H FDD +ET
Sbjct: 228 LLDIPLTTFETQIFDSVAEVDKNPCYLCARMRRGYLYSKAKELGCNKIALGHHFDDVIET 287

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFLLQRNISW 188
           + M         GM  SG  +T++  L       + + RP    + EDI+++     + +
Sbjct: 288 ILM---------GMLYSGKVETMMPKLHSQNFEGMELIRPLYLVKEEDIKAWRDYNRLQF 338

Query: 189 CEDPSNTDDRFERV 202
            +       RF   
Sbjct: 339 IQCAC----RFTEN 348


>gi|240145943|ref|ZP_04744544.1| PP-loop family protein [Roseburia intestinalis L1-82]
 gi|257201930|gb|EEV00215.1| PP-loop family protein [Roseburia intestinalis L1-82]
          Length = 415

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DSM LL  L   L            + ++    E   +  R + +   
Sbjct: 175 GDKIAVCISGGKDSM-LLAKLFQELYRHGKRNFGLVFLCMNPGYNEE--NW-RIIQENAK 230

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L I  +    +     ++            R   +   AK +    I   H FDD +ET
Sbjct: 231 LLDIPLTTFETQIFDSVAEVDKNPCYLCARMRRGYLYSKAKELGCNKIALGHHFDDVIET 290

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFLLQRNISW 188
           + M         GM  SG  +T++  L       + + RP    + EDI+++     + +
Sbjct: 291 ILM---------GMLYSGKVETMMPKLHSQNFEGMELIRPLYLVKEEDIKAWRDYNRLQF 341

Query: 189 CEDPSNTDDRFERV 202
            +       RF   
Sbjct: 342 IQCAC----RFTEN 351


>gi|241358215|ref|XP_002408845.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215497411|gb|EEC06905.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 746

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 70/180 (38%), Gaps = 17/180 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLS--DRSFGKIKFSAISVDHCLRETAKD-EVRYVSD 75
              +LV +SGG DS+ LL  L        R   +    A++VD      +   + R +  
Sbjct: 508 GDRVLVCLSGGKDSLSLLHTLRQFQFYFRRKGKRFDLGAVTVD----PGSPLYDPRPLKK 563

Query: 76  VCSRLRIAHS-----VVSWKNSKPQ-TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             + L + +      ++   ++ P+ T + +     +   I   A+     ++      D
Sbjct: 564 YLAALGVPYFYEEQCILDQASALPECTSICSFCSRMKRGRIYACARREGYNVLALGQHLD 623

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D  E+  M    +   +    +   +  + + +L ++RPF+  R +++R F  +  +   
Sbjct: 624 DLAESFVMSVFHNGRLR----TMKANYTVREGDLRVTRPFVYVREKNLRKFAEEMRLPVI 679


>gi|158320074|ref|YP_001512581.1| PP-loop domain-containing protein [Alkaliphilus oremlandii OhILAs]
 gi|158140273|gb|ABW18585.1| PP-loop domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 285

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             I++++ F  +L+     I +A+SGG DS+ LL  L   L        +   I++D   
Sbjct: 39  KFIKAIKEF--NLIEDGDKIGIAISGGKDSL-LLAKLFQELKKHGRDNFEVEYIAMDPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAHSVVSWKNSKPQTGLMAA-----AREARYALISEH 113
            E+       +  +    C+ L I   +   K  K    +          + R   + + 
Sbjct: 96  HES-------IKKLLIDNCNHLNIPVHIFESKIFKVAENIAKEYPCFMCAKMRRGALYQK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H F+D +ET  +            L  +  T     N+ + RP     
Sbjct: 149 AQELGCNKLALGHHFNDVVETTMLNLL-YTGSFKTMLPKLKATNF--ENMELIRPLYYVE 205

Query: 174 REDIRSFLLQRNI 186
            E I  +     I
Sbjct: 206 EESIIDYTESNGI 218


>gi|320333598|ref|YP_004170309.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           maricopensis DSM 21211]
 gi|319754887|gb|ADV66644.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Deinococcus
           maricopensis DSM 21211]
          Length = 287

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 67/191 (35%), Gaps = 21/191 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ++V +SGG DS  LL  L  +        I F  I+V+  L +      ++V
Sbjct: 24  RMIEDGDTVMVCLSGGKDSYTLLDILLHLQKR---APIDFRLIAVN--LDQGQPGFPKHV 78

Query: 74  S-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                + L + H +       V    +       +     R  ++  HAK I AT I   
Sbjct: 79  LPQYLTALGVEHQILEQDTYSVVKDKTPEGKTTCSLCSRLRRGILYTHAKRIGATKIALG 138

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQR 184
           H  DD LET++M         G  L  M   +  D     + RP       DI+ +    
Sbjct: 139 HHRDDILETLFMNMF-----FGARLKAMPPKLQSDDGGNVVIRPLAYVAERDIQRYADAA 193

Query: 185 NISWCEDPSNT 195
                  P N 
Sbjct: 194 GYPII--PCNL 202


>gi|68063159|ref|XP_673589.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491549|emb|CAI00377.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 405

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I +AVSGG DS  L   L ++    ++       +++D  ++    D ++ V  +   
Sbjct: 49  DKICIAVSGGKDSSVLTHVLVNIKKKYNY-NWNLFLLAIDEGIKGYRDDSLKVVYKLEKL 107

Query: 80  LRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             +  SV+ +++              +          R   + + A   NAT ++T H  
Sbjct: 108 YNLPLSVLKFQDIFSYTMDDVVSYIGKKNNCTVCGVFRRQAMEKGALLFNATKLVTGHNA 167

Query: 129 DDQLETVYMRSQRD 142
           DD  ET+ M   R 
Sbjct: 168 DDLAETILMNMCRG 181


>gi|83316075|ref|XP_731068.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490990|gb|EAA22633.1| Uncharacterized protein family UPF0021 [Plasmodium yoelii yoelii]
          Length = 418

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I +AVSGG DS  L   L ++    ++       +++D  ++    D ++ V  +   
Sbjct: 49  DKICIAVSGGKDSSVLTHVLVNIKKKYNY-NWNLFLLAIDEGIKGYRDDSLKVVYKLEKL 107

Query: 80  LRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             +  SV+ +++              +          R   + + A   NAT ++T H  
Sbjct: 108 YNLPLSVLKFQDIFSYTMDDVVSYIGKKNNCTVCGVFRRQAMEKGALLFNATKLVTGHNA 167

Query: 129 DDQLETVYMRSQRD 142
           DD  ET+ M   R 
Sbjct: 168 DDLAETILMNMCRG 181


>gi|296113321|ref|YP_003627259.1| PP-loop family protein [Moraxella catarrhalis RH4]
 gi|295921015|gb|ADG61366.1| PP-loop family protein [Moraxella catarrhalis RH4]
          Length = 377

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 29/243 (11%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           ++R F   ++    ++ V +SGG DS  LL  L  +   +    I F  ++V+    +  
Sbjct: 70  AIRDF--KMIEDGDVVMVCISGGKDSFTLLDILLFL---KRIAPIHFEVVAVNLDQKQPG 124

Query: 66  AKDEV--RYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKT 116
             +EV  RY+S+      I + ++                   +A    R   +   AK 
Sbjct: 125 FPEEVLPRYLSEQ----GIPYYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQ 180

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I AT +   H  DD L T ++      + K M    + D    D    + RP      +D
Sbjct: 181 IGATKVALGHHRDDILATFFLNLFHGGSLKAMPPKLLSD----DKQNILIRPLAYVAEKD 236

Query: 177 IRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           I  +   +       P N     +  +R  +   +R+ D       +  F+ L+    + 
Sbjct: 237 IIRYANYKKFPII--PCNLCGSQENLQRAMINDMLREWDNAHPKRLVSMFKALQNVAPSQ 294

Query: 234 VAM 236
           +A 
Sbjct: 295 LAD 297


>gi|315126297|ref|YP_004068300.1| hypothetical protein PSM_A1209 [Pseudoalteromonas sp. SM9913]
 gi|315014811|gb|ADT68149.1| hypothetical protein PSM_A1209 [Pseudoalteromonas sp. SM9913]
          Length = 304

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 29/272 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++V  F   +     I+V +SGG DS  +L  L  +       K    A+++D   +   
Sbjct: 26  QAVMDF-NMIEEGDRIMVCLSGGKDSYTMLDMLQHLQRVAPI-KFDLFAVNLD-QKQPG- 81

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V  +    L I + +V                   +     R  ++   AK + 
Sbjct: 82  --FPEHVLPEYLDNLNIEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELG 139

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177
           AT I   H  DD +ET+++         G  L  M   ++ D     + RP   C+  DI
Sbjct: 140 ATKIALGHHRDDMIETLFLNMF-----YGGKLKSMPAKLMSDNGEHMVIRPLAYCKEADI 194

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNA 233
             +   +       P N     +  +R   +  +   +          F  ++  V ++ 
Sbjct: 195 SKYAFSQGYPII--PCNLCGSQENLQRKHTKNMLEQWNKEHPGRIESIFTAMQNVVPSHL 252

Query: 234 VAMLIPKYLTVHMRSII---AISQDILNIDST 262
               +  +  +    +I    I+ D  +I   
Sbjct: 253 ADNQLFDFTNLQTGDVIDGGDIALDKPDIPKA 284


>gi|71909752|ref|YP_287339.1| PP-loop [Dechloromonas aromatica RCB]
 gi|123626220|sp|Q477W2|TTCA_DECAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|71849373|gb|AAZ48869.1| PP-loop [Dechloromonas aromatica RCB]
          Length = 287

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/225 (23%), Positives = 87/225 (38%), Gaps = 18/225 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79
           +LV VSGG DS  LL  L ++   R+  K +  A+++D   +     ++  RY   +   
Sbjct: 34  VLVCVSGGKDSYTLLAMLMALQ-QRAPVKFRLIAMNLD-QKQPGFPADILPRYFESIGIE 91

Query: 80  LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            RI     +SVV  K  + +T   +     R  +I   AK + A  I   H  DD + T+
Sbjct: 92  YRIVEADTYSVVKEKIPEGKT-TCSLCSRLRRGIIYRTAKELGANKIALGHHRDDMVHTL 150

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++        K M        +  D +  + RP   C   DI  F           P N 
Sbjct: 151 FLNLLFGGKLKAM----PPKLVTDDKSHVVIRPLAYCAEADIAKFARGMEFPII--PCNL 204

Query: 196 ---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
               D  +R ++R  +++ D          F  ++  V + +A  
Sbjct: 205 CGSQDNLQRQKIREMMQEWDKRYPGRTESVFTAMQNVVPSHLADA 249


>gi|28057567|gb|AAO29415.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
          Length = 312

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
             I+V +SGG DS  LL  L  + +       + +A+++D   +       ++V  +  S
Sbjct: 62  DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 116

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + +       V  +       L A     R   +  +A+T   T I   H  DD 
Sbjct: 117 SIGVPYHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 176

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           + T +M            LSGM   +  D     + RP       DI ++   R      
Sbjct: 177 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 230

Query: 191 DPSNT 195
            P N 
Sbjct: 231 -PCNL 234


>gi|332678470|gb|AEE87599.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf.
           novicida Fx1]
          Length = 253

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 86/231 (37%), Gaps = 20/231 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +++ +SGG DS GLL  LH ++ D+++  I     ++D   +     +   +
Sbjct: 20  KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 L +++ +       V            +     R   I  +AK      I+  H
Sbjct: 76  RKYLDDLCVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++++ M        +G   S     +  D    + RP +  +  D+  F  + N 
Sbjct: 136 HRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191

Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
                P N     +  +R +V++ ++D+ L    +       L   +++ +
Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVLSSHL 240


>gi|238028813|ref|YP_002913044.1| PP-loop family protein [Burkholderia glumae BGR1]
 gi|237878007|gb|ACR30340.1| PP-loop family protein [Burkholderia glumae BGR1]
          Length = 329

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 76/223 (34%), Gaps = 22/223 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+    +  A+++D   +        +V  +  
Sbjct: 63  GDKVMVCLSGGKDSYAMLDILLRL-RERAPIDFEIVAVNLD-QKQPG---FPEHVLPEYL 117

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +R+ +   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 118 TRIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 177

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 178 ILQTLLLNLFYGGKLKGMPPKLQSD----DGRNIVIRPLAYVKEVDLEKYAELREFPII- 232

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            P N        +R  ++  VRD D          F  L   V
Sbjct: 233 -PCNLCGSQPNLKRAEMKALVRDWDKRFPGRVDNMFSALANVV 274


>gi|71274570|ref|ZP_00650858.1| PP-loop [Xylella fastidiosa Dixon]
 gi|71898109|ref|ZP_00680295.1| PP-loop [Xylella fastidiosa Ann-1]
 gi|170730829|ref|YP_001776262.1| C32 tRNA thiolase [Xylella fastidiosa M12]
 gi|205830710|sp|B0U453|TTCA_XYLFM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|71164302|gb|EAO14016.1| PP-loop [Xylella fastidiosa Dixon]
 gi|71732083|gb|EAO34139.1| PP-loop [Xylella fastidiosa Ann-1]
 gi|167965622|gb|ACA12632.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 299

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
             I+V +SGG DS  LL  L  + +       + +A+++D   +       ++V  +  S
Sbjct: 49  DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 103

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + +       V  +       L A     R   +  +A+T   T I   H  DD 
Sbjct: 104 SIGVPYHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 163

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           + T +M            LSGM   +  D     + RP       DI ++   R      
Sbjct: 164 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 217

Query: 191 DPSNT 195
            P N 
Sbjct: 218 -PCNL 221


>gi|161870133|ref|YP_001599303.1| hypothetical protein NMCC_1172 [Neisseria meningitidis 053442]
 gi|161595686|gb|ABX73346.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 281

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 81/252 (32%), Gaps = 22/252 (8%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS  LL  L  + +       +  A+++D   +    +EV         + + 
Sbjct: 2   VCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPGFPEEVLP--TYLESIGVP 57

Query: 84  HSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           + +V         +         +     R  ++   AK +  T I   H  DD L T++
Sbjct: 58  YKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDDILATMF 117

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           +         G  L  M   ++ D    I  RP    + +D+  +   +       P N 
Sbjct: 118 LNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKQFPII--PCNL 170

Query: 196 ---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
                  +R  +   +RD D          F  L+  V + +A           R     
Sbjct: 171 CGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHLADTELFDFAGLERGQTLK 230

Query: 253 SQDILNIDSTLL 264
               L  DS  +
Sbjct: 231 HGGDLAFDSEKM 242


>gi|319936857|ref|ZP_08011269.1| PP-loop family protein [Coprobacillus sp. 29_1]
 gi|319808125|gb|EFW04697.1| PP-loop family protein [Coprobacillus sp. 29_1]
          Length = 279

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 29/196 (14%)

Query: 10  RFFVRS------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----- 58
           R FV+       +     I V +SGG DSM +   L  +   +  GK  F  + +     
Sbjct: 21  RKFVKGVQTYDMIQPNDKIAVCISGGKDSMLMAKLLQEL---KRHGKFDFELVFLSMDPG 77

Query: 59  -DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA----AREARYALISEH 113
            +   R       + + +    L I          +  T +  +        R   +   
Sbjct: 78  YNEKNR-------KKIEENAEILDIPVQFFESDIFQVVTNIEKSPCYLCARMRRGFLYAK 130

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK +    I   H  DD +ET+ M        + M       +  ++  + + RP     
Sbjct: 131 AKELGCNKIALGHHIDDVVETILMGMFYGSQIQTM--MPKLHSTNFE-GMELIRPMYLIE 187

Query: 174 REDIRSFLLQRNISWC 189
            +DI  +    ++++ 
Sbjct: 188 EKDIIHWCHYNDLAFI 203


>gi|299143332|ref|ZP_07036412.1| PP-loop family protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298517817|gb|EFI41556.1| PP-loop family protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 282

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 63/189 (33%), Gaps = 13/189 (6%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  + ++  F   +     I VA+SGG DS+ L      +         +   I++D   
Sbjct: 27  VKFVRAINEF-EMISEGDRIAVAISGGKDSLTLAKLFQEL-KRHGKMNFELEFIAMDPGY 84

Query: 63  RETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
           R+  +  + Y    C ++ I        V    N   Q          R   +   A+ +
Sbjct: 85  RKENRQVLEYN---CEKMGIPVKIHNSDVFEVANRVAQNNPCYMCARMRRGNLYSKAQEL 141

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H F+D +ETV +        K M      D       L + RP      E I
Sbjct: 142 GCNKLALGHHFNDVIETVMLNVIFAGNFKTMMPKLHSDNF---EGLELIRPMYYVEEEAI 198

Query: 178 RSFLLQRNI 186
           + F+    +
Sbjct: 199 KRFMRSTGL 207


>gi|134297159|ref|YP_001120894.1| C32 tRNA thiolase [Burkholderia vietnamiensis G4]
 gi|205830572|sp|A4JIF6|TTCA_BURVG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|134140316|gb|ABO56059.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia vietnamiensis G4]
          Length = 337

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 22/224 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS  +L  L  +  +R+       A+++D   +        +V  + 
Sbjct: 62  AGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVNLD-QKQPG---FPEHVLPEY 116

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +++ +   +       +  +         +     R  ++   A  + AT I   H  D
Sbjct: 117 LTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRD 176

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D L+T+ +        KGM      D    D    + RP    +  D+  +   R     
Sbjct: 177 DILQTLLLNMFYGGKLKGMPPKLQSD----DGRNVVIRPLAYVKETDLEKYAELREFPII 232

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             P N        +R  ++  +R+ D          F  L   V
Sbjct: 233 --PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFSALANVV 274


>gi|15805507|ref|NP_294203.1| C32 tRNA thiolase [Deinococcus radiodurans R1]
 gi|81551821|sp|Q9RX35|TTCA_DEIRA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|6458168|gb|AAF10060.1|AE001907_6 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 299

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 23/192 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDEV 70
           R +     ++V +SGG DS  LL  L  +        I F  ++V+  L   +     +V
Sbjct: 36  RMIEQGDRVMVCLSGGKDSYTLLDVLLHLQKK---APIDFEVVAVN--LDQGQPGFPKDV 90

Query: 71  --RYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
             RY++ +  R  I     +SVV  K  + +T   +     R  ++ +HA+ I AT I  
Sbjct: 91  LPRYLTALGVRHDILTEDTYSVVKEKTPEGKT-TCSLCSRLRRGILYQHAREIGATKIAL 149

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183
            H  +D LET++M         G  L  M   +  D     + RP       DI  +   
Sbjct: 150 GHHREDILETLFMNMF-----FGARLKAMPPKLQSDDGTNVVIRPLAYVAEADIIRYAQA 204

Query: 184 RNISWCEDPSNT 195
           R       P N 
Sbjct: 205 REFPVI--PCNL 214


>gi|332971603|gb|EGK10553.1| PP-loop family protein [Kingella kingae ATCC 23330]
          Length = 316

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 84/256 (32%), Gaps = 24/256 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L  + +     + +  A+++D   +        +V  +  
Sbjct: 35  GDKIMVCLSGGKDSYALLDILRQLQASAPI-EFELIAVNLD-QKQPG---FPEHVLPEYL 89

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + + +   +V         +  +      +     R  ++   AK +  T I   H  DD
Sbjct: 90  TSIGVPFKIVEEDTYSTVKRVLEEGKTTCSLCSRLRRGILYRTAKELGCTKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            + T+++         G  L  M   ++ D    I  RP    + +D+  +   +     
Sbjct: 150 IIATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDLIKYAELKEFPII 204

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  +   ++D D          F  L+  V + +A           
Sbjct: 205 --PCNLCGSQPNLQRQVIGDMLKDWDRRFPGRIESMFSALQNVVPSHLADTELFDFAGLQ 262

Query: 247 RSIIAISQDILNIDST 262
           R         L  DS 
Sbjct: 263 RGQNLKHGGDLAFDSE 278


>gi|237747072|ref|ZP_04577552.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Oxalobacter
           formigenes HOxBLS]
 gi|229378423|gb|EEO28514.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Oxalobacter
           formigenes HOxBLS]
          Length = 321

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 15/173 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++V +SGG DS  LL  L  + + R+    +  A+++D  L     D +         
Sbjct: 88  DRVMVCLSGGKDSFALLDILLGLQA-RAPIHFELVAVNLDQQLPGFPTDVLP---AYLKD 143

Query: 80  LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             I   +       +  +       + +     R  ++   A  + AT I   H  DD L
Sbjct: 144 KGIPFHIETQDTYSIIRRLIPENKPVCSLCSRLRRGILYRVASELGATKIALGHHRDDVL 203

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET ++        K    S        D    + RP +  +  DI  F   + 
Sbjct: 204 ETFFLNLFYGSKIK----SMPPKLKTDDGKHIVIRPLVYVKETDIERFADIQQ 252


>gi|134302168|ref|YP_001122137.1| ATPase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|205830357|sp|A4IYL5|TTCA2_FRATW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|134049945|gb|ABO47016.1| putative ATPase, PP-loop family [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 251

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 20/227 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +++ +SGG DS GLL  LH ++ D+++  I     ++D   +     +   +
Sbjct: 20  KLLDKGDKVMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD---QSQPGWDDSQL 75

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 L +++ +       V            +     R   I  +AK      I+  H
Sbjct: 76  RKYLDDLGVSYEIETKNTYGVIIDKVPEGKTYCSLCSRLRRGNIYRYAKEHKMDKIILGH 135

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++++ M        +G   S     +  D    + RP +  +  D+  F  + N 
Sbjct: 136 HHDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLVQERDLIEFAKEENF 191

Query: 187 SWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
                P N     +  +R +V++ ++D+ L    +       L   +
Sbjct: 192 PII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNVL 236


>gi|210620722|ref|ZP_03292208.1| hypothetical protein CLOHIR_00151 [Clostridium hiranonis DSM 13275]
 gi|210155223|gb|EEA86229.1| hypothetical protein CLOHIR_00151 [Clostridium hiranonis DSM 13275]
          Length = 281

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 18/195 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  I   +     +     I VA+SGG DS+ L+  +   L   S    +   +++D  
Sbjct: 31  FLKAINDYKL----ISDGDRIAVAISGGKDSL-LMAKMFQELKKYSNIDFELVFLAMDPG 85

Query: 62  LRETAKDEVR-YVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAK 115
            R    D++R  + ++C  L I   +         +   +          R   +   A+
Sbjct: 86  YR----DDIRVKLEELCKYLNIPVEIFESGIFRITDEIARDNPCYMCARMRRGALYNKAE 141

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    +   H +DD +ET  M            L  +  +   ++   I RP    R E
Sbjct: 142 ELGCNKLALGHHYDDVIETTMMNIL-CSGNFKTMLPKIKSSKSGEMQ--IIRPLYYIREE 198

Query: 176 DIRSFLLQRNISWCE 190
            I+ F+    I   +
Sbjct: 199 YIKRFVRYTGIEPLD 213


>gi|291227129|ref|XP_002733541.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 1090

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 18/198 (9%)

Query: 1    MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISV 58
            +F   ++++  +   +     +LV +SGG DS+ LL  L      + +        A++V
Sbjct: 835  LFKPAVQALEEY-NMIENGDKVLVCLSGGKDSLSLLHTLRQYQFYASKKGIDYSLGAVTV 893

Query: 59   DHCLRETA-KDEVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALIS 111
            D          +   + D    L + +       +   K       + +     +   I 
Sbjct: 894  D----PQTPSFDPSPLKDYLKALNVPYFYEEQGIIEQAKQLAVCESICSFCSRMKRGRIY 949

Query: 112  EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
              A+     ++      DD  E+  M +  +   +    +   +  + + +L + RP + 
Sbjct: 950  ACARREGYNVLAMGQHLDDLTESFLMSAFHNGLLR----TMKANYSVKEGDLRVIRPLVY 1005

Query: 172  CRREDIRSFLLQRNISWC 189
             R  D RSF  Q  +   
Sbjct: 1006 VRETDTRSFAEQVKLPVI 1023


>gi|310778070|ref|YP_003966403.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926]
 gi|309747393|gb|ADO82055.1| PP-loop domain protein [Ilyobacter polytropus DSM 2926]
          Length = 282

 Score = 90.4 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 19/233 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             I++++ F   L+     I V VSGG DS+ +      +  DR+    +   IS++   
Sbjct: 40  KFIKAIKDF--ELIEDGDRIAVGVSGGKDSLLMCKLFQELKKDRT-KNFEVVFISMNPGF 96

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQ--TGLMAAAREARYALISEHAKTI 117
              A D  ++     + L I   +     W+ +  Q          + R  ++ +  + +
Sbjct: 97  --EAMDVDQF-KHNLTELDIPCEIFDSNVWEVAFEQDPENPCFLCAKMRRGVLYKKVEEL 153

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +         G   + +         L + RP +  +  DI
Sbjct: 154 GCNKLALGHHFDDAVETALINMF----YAGTVKTMIPKVKSTSGKLGLIRPMIYIKEIDI 209

Query: 178 RSFLLQRNISWCEDPSNTD---DRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            ++  +  IS        +      +R  ++  + D++     +K   F  ++
Sbjct: 210 INYTHKNGISPMTCGCPIESGKTDSKRKEIKNLLADMEQKNPNIKQSIFNSMK 262


>gi|260425967|ref|ZP_05779946.1| PP-loop domain containing protein [Citreicella sp. SE45]
 gi|260420459|gb|EEX13710.1| PP-loop domain containing protein [Citreicella sp. SE45]
          Length = 286

 Score = 90.4 bits (223), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 18/192 (9%)

Query: 4   SPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +++VR  V   R +   A  LV +SGG DS  LL  LH +   R    ++  A ++D 
Sbjct: 27  RIVQNVREAVDQYRMIEPGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVELLACNLDQ 85

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113
                    +    +   ++ + H +       V            A     R   +   
Sbjct: 86  GQPGFPSTVLP---EFLEKMGLPHRIEYQDTYSVVVDKVPQGRTYCALCSRLRRGNLYRI 142

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+    + ++  H  DD LET +M         G   +     +  + +L++ RP     
Sbjct: 143 AREEGCSAVVLGHHRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVA 198

Query: 174 REDIRSFLLQRN 185
             D   F    N
Sbjct: 199 EADCEKFARAMN 210


>gi|317055960|ref|YP_004104427.1| PP-loop domain-containing protein [Ruminococcus albus 7]
 gi|315448229|gb|ADU21793.1| PP-loop domain protein [Ruminococcus albus 7]
          Length = 290

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 64/180 (35%), Gaps = 15/180 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVRYV 73
           +     I V +SGG DSM + + +  +     + K+ F    I +D      A    + +
Sbjct: 33  IQEGDKIAVCISGGKDSMMMAVCMKRLQ---RYSKVPFDVEYIVMD---PGYAPANRQKI 86

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            D  ++L I   +   K        +          R   + ++A+ +    I   H FD
Sbjct: 87  IDNAAKLEIPIKIFETKIFDSVVNVKQNPCYLCARMRRGYLYKNAQELGCNKIALGHHFD 146

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        + M      +       + + RP    R EDI  +    ++ + 
Sbjct: 147 DVIETILMGMLYGSQVQTMMPKIHSENF---EGMQLIRPLYMVREEDIIKWCGYNDLKFI 203


>gi|89256143|ref|YP_513505.1| C32 tRNA thiolase [Francisella tularensis subsp. holarctica LVS]
 gi|115314615|ref|YP_763338.1| PP-loop superfamily ATPase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502170|ref|YP_001428235.1| ATPase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167010589|ref|ZP_02275520.1| hypothetical protein Ftulh_07739 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367466|ref|ZP_04983492.1| hypothetical protein FTHG_00711 [Francisella tularensis subsp.
           holarctica 257]
 gi|290953286|ref|ZP_06557907.1| ATPase [Francisella tularensis subsp. holarctica URFT1]
 gi|295313492|ref|ZP_06804088.1| ATPase [Francisella tularensis subsp. holarctica URFT1]
 gi|122325361|sp|Q0BMI3|TTCA1_FRATO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|122500903|sp|Q2A447|TTCA1_FRATH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|205830351|sp|A7NBC6|TTCA1_FRATF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|89143974|emb|CAJ79199.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129514|gb|ABI82701.1| possible PP-loop superfamily ATPase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253282|gb|EBA52376.1| hypothetical protein FTHG_00711 [Francisella tularensis subsp.
           holarctica 257]
 gi|156252773|gb|ABU61279.1| putative ATPase, PP-loop family [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 251

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 87/241 (36%), Gaps = 27/241 (11%)

Query: 7   ESVRFFVRSLVYPAHIL-------VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           + +R ++   +    +L       + +SGG DS GLL  LH ++ D+++  I     ++D
Sbjct: 6   KKLRHYITKAIADYKLLDKGDKAMLCLSGGKDSFGLLKVLHGLIEDKTY-DIDLHVYTLD 64

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
              +     +   +      L +++ +       V            +     R   I  
Sbjct: 65  ---QSQPGWDDSQLRKYLDDLGVSYEIETKNTYGVVIDKVPEGKTYCSLCSRLRRGNIYR 121

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           +AK      I+  H  DD ++++ M        +G   S     +  D    + RP +  
Sbjct: 122 YAKEHKMDKIILGHHRDDLIQSLLMSIL----YQGQIKSMPPKFVTQDGENTVIRPMVLV 177

Query: 173 RREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           +  D+  F  + N      P N     +  +R +V++ ++D+ L    +       L   
Sbjct: 178 QERDLIEFAKEENFPII--PCNLCGSQENLKRKKVKKLIQDLALENPKVPSNILNSLSNV 235

Query: 230 V 230
           +
Sbjct: 236 L 236


>gi|254470160|ref|ZP_05083564.1| ATPase, PP superfamily [Pseudovibrio sp. JE062]
 gi|211960471|gb|EEA95667.1| ATPase, PP superfamily [Pseudovibrio sp. JE062]
          Length = 321

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 77/234 (32%), Gaps = 23/234 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                 L+ +SGG DS  LL  L  +   R    +   A ++D   +         + + 
Sbjct: 63  PEKTKWLICLSGGKDSYTLLAVLMDL-KWRGLLPVDLIACNLD---QSQPGFPQHILPEF 118

Query: 77  CSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFD 129
             R  I + +V         +  P+T    +     R  ++   A+ +    I+  H  D
Sbjct: 119 FERYEIPNLIVRENTYGIVTDKLPETSTYCSLCSRLRRGILYRTARELGCEAIVLGHHRD 178

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LET  M         G   S     +  + +L + RP +     DI  F         
Sbjct: 179 DALETFMMNMFHG----GRMASMPPKLVNDEGDLMVLRPLMNSSEADIEKFSKAMEFPII 234

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLH---ALYLKMKKFQDLRVKVNNAVAML 237
             P N     D  +RV+V+  ++  +      L +  +    +R    +     
Sbjct: 235 --PCNLCGSQDGLQRVQVKNMLQQWEKETPGRLGIMARALAHVRPSHLHDAKAF 286


>gi|226324108|ref|ZP_03799626.1| hypothetical protein COPCOM_01886 [Coprococcus comes ATCC 27758]
 gi|225207657|gb|EEG90011.1| hypothetical protein COPCOM_01886 [Coprococcus comes ATCC 27758]
          Length = 377

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 88/236 (37%), Gaps = 24/236 (10%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++VR +   LV     I V +SGG DSM +      +     F   +   + +D      
Sbjct: 126 KAVREY--ELVKEGDRIAVCISGGKDSMLMAKLFQELKRHNKF-NFEVKFLVMDPGYSPE 182

Query: 66  AKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            +  +    +   +++I   +    +     + +          R   +   A+ +    
Sbjct: 183 NRKVIE---ENARKMKIPIQIFESNIFESVFEIEKSPCYICARMRRGYLYNFAQQMGCNK 239

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I   H +DD +ET+ M        + M       +  ++  + + RP    R +DI+++ 
Sbjct: 240 IALGHHYDDVIETILMGMLYSAQVQTM--MPKLHSTNFE-GMELIRPMYLIREDDIKAWR 296

Query: 182 LQRNISWCEDPS----------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
              ++ + +             N +++ +R+ +++ + ++     +++   F+ + 
Sbjct: 297 DYNDLHFIQCACKFTDTCTTCNNEENQSKRMEIKKLIAELKKTNPFVEGNIFKSVE 352


>gi|323149149|ref|YP_004221978.1| tRNA(Ile)-lysidine synthetase [Coccomyxa sp. C-169]
 gi|317467205|gb|ADV29826.1| tRNA(Ile)-lysidine synthetase [Coccomyxa sp. C-169]
          Length = 227

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 9/168 (5%)

Query: 3   LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +  +  VR  ++    L      ++A+SGG DS  L+     +   R      F  IS +
Sbjct: 9   IELVNEVRTILKKRNALTANTATILAISGGQDSACLIAMATQMREQRR---CSFGVISCN 65

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H  +  +   + +V   C    +    + +  +       A AR  RY  +       + 
Sbjct: 66  HLWQRDSFHGLVHV---CRLAFLVCQPIYFVAAPFNISNEANARSWRYNSMHRIGGLYHF 122

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           + I T HT  D++ET+     R    +G+   G     +     W  R
Sbjct: 123 STICTGHTASDRVETILFNFVRGSGTRGLSALGWNRFFVTSYPHWYHR 170


>gi|77747703|ref|NP_779766.2| hypothetical protein PD1573 [Xylella fastidiosa Temecula1]
 gi|182682182|ref|YP_001830342.1| C32 tRNA thiolase [Xylella fastidiosa M23]
 gi|205830660|sp|B2I7H1|TTCA_XYLF2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830734|sp|Q87B85|TTCA_XYLFT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|182632292|gb|ACB93068.1| PP-loop domain protein [Xylella fastidiosa M23]
 gi|307578450|gb|ADN62419.1| C32 tRNA thiolase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 299

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
             I+V +SGG DS  LL  L  + +       + +A+++D   +       ++V  +  S
Sbjct: 49  DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 103

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + +       V  +       L A     R   +  +A+T   T I   H  DD 
Sbjct: 104 SIGVPYHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 163

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           + T +M            LSGM   +  D     + RP       DI ++   R      
Sbjct: 164 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 217

Query: 191 DPSNT 195
            P N 
Sbjct: 218 -PCNL 221


>gi|119774936|ref|YP_927676.1| C32 tRNA thiolase [Shewanella amazonensis SB2B]
 gi|205830625|sp|A1S6K0|TTCA_SHEAM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|119767436|gb|ABM00007.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 319

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 86/248 (34%), Gaps = 25/248 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+    +  A+++D   +        +V       L +  
Sbjct: 48  LSGGKDSYAMLDILINLQ-QRAPVSFEIVAVNLD-QKQPG---FPEHVLPAYLETLGVPF 102

Query: 85  SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 103 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 162

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195
                    G  +  M   +L D     + RP   CR +DI  +   +       P N  
Sbjct: 163 NMF-----YGGKMKAMPPKLLSDDGANVVIRPLAYCREKDIAEYAELKQFPII--PCNLC 215

Query: 196 --DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRSIIAI 252
              +  +R  V+  ++  D          F  ++    +  V      ++++        
Sbjct: 216 GSQENLKRAAVKDMLKQWDRQHPGRIETIFTAMQNTAPSQGVDREQFDFVSLKQDPNAEF 275

Query: 253 SQDILNID 260
             D+   D
Sbjct: 276 RGDVAEAD 283


>gi|312880289|ref|ZP_07740089.1| PP-loop domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783580|gb|EFQ23978.1| PP-loop domain protein [Aminomonas paucivorans DSM 12260]
          Length = 258

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 15/220 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRETAKDEVRYVS 74
           ++    IL+ +SGG DS+ L + L  +   RS       A  VD H            + 
Sbjct: 29  ILPHDRILLGLSGGKDSILLALGLRELQR-RSPVPFHLQACFVDSHG----EDSVPPSLQ 83

Query: 75  DVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           D  + L I     S+        + +    +     R  +++  A+     ++   H  D
Sbjct: 84  DFAASLGIPLVTRSYPIFPILKEREEAHPCSLCAHLRRGILASCAQETGNNVLALGHHLD 143

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D LET  +         G          +    + + RP +      + + + +      
Sbjct: 144 DALETTLLNLC----HAGRFRCFSPHMTMSRSGIRVIRPLVFLEESAVAAEVARLGYIPS 199

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
             P        R  ++  +++++     +K      L+  
Sbjct: 200 APPCPFGMEGRRGAMKHLLKELETSIPEIKGNLLHALQTH 239


>gi|117619906|ref|YP_856828.1| tRNA s2C32 biosynthesis protein TtcA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|205830593|sp|A0KKM7|TTCA_AERHH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|117561313|gb|ABK38261.1| tRNA s2C32 biosynthesis protein TtcA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 302

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L S+ +          A+++D   +        +V  +  
Sbjct: 37  GDKVMVCLSGGKDSFAMLDILMSLKASAPI-HFDLVAVNLD-QKQPG---FPEHVLPEYL 91

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + L I   +V                   A     R  ++   A+ +  T I   H  DD
Sbjct: 92  TTLGIDFKIVEEDTYAIVKEKVPEGKTTCALCSRLRRGILYRTAQELGCTKIALGHHRDD 151

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++        K    S     +  D    + RP   C+ +D+  +   +      
Sbjct: 152 ILETLFLNMFYGGKLK----SMPPKLVSDDGKNVVIRPLAYCKEKDLVRYAEVKAFPII- 206

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N     +  +R  +++ +++ D          F  ++  + + +            R
Sbjct: 207 -PCNLCGSQENLQRQAIKQMMQEWDRRFPGRLETMFTAIQDVIPSHLLDHKLFDFKSINR 265

Query: 248 SIIAISQDILNIDSTLL 264
               I       D   L
Sbjct: 266 DSGIIDGGDKAFDPPEL 282


>gi|9105431|gb|AAF83379.1|AE003903_15 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 312

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
             I+V +SGG DS  LL  L  + +       + +A+++D   +       ++V  +  S
Sbjct: 62  DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 116

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + H +       V  +       L A     R   +  +A+T   T I   H  DD 
Sbjct: 117 SIGMPHHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 176

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           + T +M            LSGM   +  D     + RP       DI ++   R      
Sbjct: 177 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 230

Query: 191 DPSNT 195
            P N 
Sbjct: 231 -PCNL 234


>gi|268608249|ref|ZP_06141976.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Ruminococcus flavefaciens FD-1]
          Length = 374

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 12/180 (6%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            LV P   I V +SGG DSM +      +     F   +   + +D       +  +   
Sbjct: 128 QLVQPNDRIAVCISGGKDSMLMAKLFQELKRHDKFP-FEVVFLVMDPGYSPENRRVIE-- 184

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            D    + I   +            +          R   +   AK +    I   H FD
Sbjct: 185 -DNARSMSIPVHIFESTIFDSVYNIEKNPCYICARMRRGYLYSKAKELGCNKIALGHHFD 243

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET+ M        + M       +  +D  + + RP    R ++I+ +    ++ + 
Sbjct: 244 DVIETILMGMLYGGQVQTM--MPKLHSTNFD-GMELIRPLYLVREDEIKHWRDYNDLHFI 300


>gi|325526540|gb|EGD04096.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Burkholderia sp.
           TJI49]
          Length = 332

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 22/223 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +  +R+    +  A+++D   +        +V  +  
Sbjct: 64  GDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFEIVAVNLD-QKQPG---FPEHVLPEYL 118

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +++ +   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 119 TQVGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDD 178

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        KGM      D    D    + RP    +  D+  +   R      
Sbjct: 179 ILQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPLAYVKETDLEKYAELREFPII- 233

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            P N        +R  ++  +R+ D          F  L   V
Sbjct: 234 -PCNLCGSQPNLKRAEMKALIREWDKRFPGRVDNMFSALANVV 275


>gi|332535847|ref|ZP_08411573.1| tRNA(cytosine32)-2-thiocytidine synthetase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332034756|gb|EGI71297.1| tRNA(cytosine32)-2-thiocytidine synthetase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 304

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 22/198 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++V  F   +     I+V +SGG DS  +L  L  +   +    IKF  + V+  L +  
Sbjct: 26  QAVMDF-NMIEEGDRIMVCLSGGKDSYTMLEMLQHL---KRVAPIKFDLVVVN--LDQKQ 79

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V      +L + + +V                   +     R  ++   A  + 
Sbjct: 80  PGFPEHVLPQYLDKLNVEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTANELG 139

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177
           AT I   H  DD +ET+++         G  L  M   ++ D     + RP   C+  DI
Sbjct: 140 ATKIALGHHRDDMIETLFLNMF-----YGGKLKSMPAKLMSDNGEHMVIRPLAYCKESDI 194

Query: 178 RSFLLQRNISWCEDPSNT 195
             +   +       P N 
Sbjct: 195 SQYAFAQGYPII--PCNL 210


>gi|307131365|ref|YP_003883381.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Dickeya dadantii
           3937]
 gi|306528894|gb|ADM98824.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Dickeya dadantii
           3937]
          Length = 313

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 85/256 (33%), Gaps = 24/256 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        +V     
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHVLPQYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  DSIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            L+T+++         G  L GM   ++ D     + RP   CR +DI  F   R     
Sbjct: 154 ILQTLFLNMF-----YGGKLKGMPPKLVSDDGKHVVIRPLAYCREKDIERFADARQFPII 208

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  ++  +RD D          F  ++  V + +            
Sbjct: 209 --PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQNAVPSHLCDTNLFDFKSIR 266

Query: 247 RSIIAISQDILNIDST 262
           +    +    L  D  
Sbjct: 267 QGSEVVDGGDLAFDRE 282


>gi|254671409|emb|CBA08896.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 319

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 91/270 (33%), Gaps = 25/270 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFQLVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVLYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   +RD D          F  L+  V + +
Sbjct: 193 IKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           A           R         L  DS  +
Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSEKM 280


>gi|262278086|ref|ZP_06055871.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258437|gb|EEY77170.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter
           calcoaceticus RUH2202]
          Length = 301

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 27/271 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F   L     ++V VSGG DS  LL  +      +    I F  ++V+    +   
Sbjct: 37  AIRDF-NMLEEGDKVMVCVSGGKDSYTLLDIMLQF---KRIAPINFDVVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + +       ++ + +       A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD L T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +   R       P N     +  +R  +   +RD D        K+   +   + N    
Sbjct: 207 YAELRQFPII--PCNLCGSQENLQRAMLNEMLRDWDKQYP----KRLHSIFGALQNVSPS 260

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
            +         ++ +  +        L   L
Sbjct: 261 QLADRELFDFEALDSQRELDFKDPEELKNRL 291


>gi|293115558|ref|ZP_05792063.2| PP-loop family protein [Butyrivibrio crossotus DSM 2876]
 gi|292809265|gb|EFF68470.1| PP-loop family protein [Butyrivibrio crossotus DSM 2876]
          Length = 390

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 11/178 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     + V +SGG DSM +      +     F   +   + +D    E  +  +     
Sbjct: 144 LKPGDKVAVCISGGKDSMLMAKLFQEIKRHNKF-DFELVFLVMDPGYSEVNRLVIE---K 199

Query: 76  VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               L +  ++   +        +          R   +   AK +    I   H +DD 
Sbjct: 200 NARMLGVPITIFETQIFDAVYDVKQSPCYLCARMRRGYLYSKAKELGCNKIALGHHYDDV 259

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           +ET+ M        + M       +  ++  + + RP    R +DI  +    N+ + 
Sbjct: 260 IETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPMYYIREDDIMHWRDFNNLHFI 314


>gi|94309129|ref|YP_582339.1| hypothetical protein Rmet_0184 [Cupriavidus metallidurans CH34]
 gi|205830620|sp|Q1LS06|TTCA_RALME RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|93352981|gb|ABF07070.1| putative ydaO, C32 tRNA thiolase [Cupriavidus metallidurans CH34]
          Length = 314

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 96/281 (34%), Gaps = 24/281 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80
           +LV +SGG DS  +L  L ++   R+  + K  A+++D   +        +V       L
Sbjct: 34  VLVCMSGGKDSYTMLSVLTALQK-RAPIQFKLIAMNLD-QKQPG---FPEHVLPAYLKSL 88

Query: 81  RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + + +V                   +     R  +I   AK + A  I   H  DD + 
Sbjct: 89  GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVN 148

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDP 192
           T ++         G  +  M   +  D    I  RP   C  +DI S+           P
Sbjct: 149 TFFLNMF-----FGGKMKAMPPKLATDDGQHIVIRPLAYCAEKDIASYARAMAFPII--P 201

Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            N     +  +R +V   ++  +          F  LR  V + +A       T     +
Sbjct: 202 CNLCGSQENLQRKKVSEMLQAWERENPGRIDNIFAALRNVVPSHLADTDLFPFTGLATGL 261

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
             I +  L  ++T     L  +  +   ++    +  +++V
Sbjct: 262 AKIDEASLFGETTFTQQALTFTGNVEANRMEFVRFDKIQKV 302


>gi|293609921|ref|ZP_06692223.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828373|gb|EFF86736.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 313

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 84/268 (31%), Gaps = 21/268 (7%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F   +     ++V VSGG DS  LL  L      +    I F  ++V+    +   
Sbjct: 49  AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFEVVAVNLDQKQPGF 104

Query: 67  KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + +       ++ + +       A     R   +   A+ I A
Sbjct: 105 PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 162

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD + T ++      + K M        +  D    + RP      +DI  
Sbjct: 163 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 218

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +   R       P N     +    R  + ++         K+   +   + N     + 
Sbjct: 219 YAEIRQFPII--PCNLCGS-QENLQRAMLNEMLREWDKQYPKRLHSIFGALQNVSPSQLA 275

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL 267
                   ++ +  +  +     L   L
Sbjct: 276 DRELFDFEALDSQRELDIKDPEELKNRL 303


>gi|153003817|ref|YP_001378142.1| C32 tRNA thiolase [Anaeromyxobacter sp. Fw109-5]
 gi|205830553|sp|A7H8W2|TTCA_ANADF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|152027390|gb|ABS25158.1| PP-loop domain protein [Anaeromyxobacter sp. Fw109-5]
          Length = 303

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 92/285 (32%), Gaps = 21/285 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +  +   ++R F   +     I+VAVSGG DS  LL  L  +  +R+       A+++D 
Sbjct: 24  LLRAAANAIRDF-ELIGDGDRIMVAVSGGKDSYTLLHVLMRL-RERAPIDFDLVAVNLD- 80

Query: 61  CLRETAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEH 113
             +         V      + + H         +  +               R  ++   
Sbjct: 81  --QGQPGYPAEIVERHFQAVGVPHRMLYADTYSIVRRLVPEGKTTCPVCSRLRRGVLYNA 138

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  +  T I   H  DD +ET+ +         G   S        D    + RP     
Sbjct: 139 AAEMGCTKIALGHHRDDLVETLLL----SALYSGALKSMPPKLRSDDGRNVVVRPLCYAA 194

Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-N 231
            EDI +F           D   +     R RV+  + ++      +K      L   V +
Sbjct: 195 EEDIAAFATAMRFPIVPCDLCGSQPNLRRKRVKALLAELSDEHPAVKGNLLNALGHVVPS 254

Query: 232 NAVAMLIPKYLTVHMRSII---AISQDILNIDSTLLFYLLRVSAA 273
           + +   + + +    R         +D   +   +   L++++ A
Sbjct: 255 HLLDRDLHRLVASTGRDPWLDGDEDEDGGCLQGEVADALVKLAGA 299


>gi|115353078|ref|YP_774917.1| C32 tRNA thiolase [Burkholderia ambifaria AMMD]
 gi|122322057|sp|Q0BB90|TTCA_BURCM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|115283066|gb|ABI88583.1| tRNA s(2)C-32 sulfurtransferase [Burkholderia ambifaria AMMD]
          Length = 334

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 88/276 (31%), Gaps = 25/276 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 45  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 103

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 104 LD-QKQPG---FPEHVLPEYLTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 159

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD L+T+ +        KGM      D    D    + RP 
Sbjct: 160 LYRVAGELGATKIALGHHRDDILQTLLLNMFYGGKLKGMPPKLQSD----DGRNVVIRPL 215

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  F   R       P N        +R  ++  +RD D          F  L
Sbjct: 216 AYVKETDLEKFAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFSAL 273

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
              V + +             +  A  Q  +  D  
Sbjct: 274 ANVVPSHLMDTTQFPFASLRATGQADPQGDIAFDEE 309


>gi|319788521|ref|YP_004147996.1| PP-loop domain protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317467033|gb|ADV28765.1| PP-loop domain protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 306

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 62/186 (33%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L  +       + +  A+++D   +        +V  +  
Sbjct: 48  GDKVMVCLSGGKDSYTLLDVLLQLQKKAPV-RFELVAVNLD-QKQPG---FPEHVLPEYL 102

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +   +       V  +       + +     R   +  +A     T I   H  DD
Sbjct: 103 RGLGVPFHIIEQDTYSVVTRVVPEGKTMCSLCSRLRRGALYSYAAEHGFTKIALGHHRDD 162

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            + T +M            +SGM   +L D     + RP    R EDI  +   R     
Sbjct: 163 MVATFFMNLFHHAK-----ISGMPPKLLSDDGRHVVIRPLAYVREEDIVQYAAARQFPII 217

Query: 190 EDPSNT 195
             P N 
Sbjct: 218 --PCNL 221


>gi|329119523|ref|ZP_08248208.1| PP-loop family protein [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464456|gb|EGF10756.1| PP-loop family protein [Neisseria bacilliformis ATCC BAA-1200]
          Length = 313

 Score = 90.0 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 90/268 (33%), Gaps = 25/268 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + S       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQSSAPV-DFELVAVNLD-QKQPR 79

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV         + + + +V         +         +     R  ++   AK + 
Sbjct: 80  FPEEVLP--TYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTAKELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDI 177
            T I   H  DD L T+++         G  L  M   ++ D    I  RP    + +D+
Sbjct: 138 CTKIALGHHRDDILATLFLNMF-----YGGKLKAMPPKLVSDNGEHIVIRPLAYVKEKDL 192

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N        +R  +   ++D D          F  LR  V + +
Sbjct: 193 IRYAEIKQFPII--PCNLCGSQPNLQRQVIGDMLKDWDKRFPGRIESMFSALRNVVPSHL 250

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDST 262
           A           R         L  DS 
Sbjct: 251 ADTELFDFAGLERGQTLKHGGDLAFDSE 278


>gi|332527842|ref|ZP_08403880.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rubrivivax
           benzoatilyticus JA2]
 gi|332112237|gb|EGJ12213.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rubrivivax
           benzoatilyticus JA2]
          Length = 308

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 21/249 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75
               ++V +SGG DS  LL  L S+  +R+    +  A+++D   +     EV   Y+  
Sbjct: 42  AGDRVMVCMSGGKDSHALLDILLSM-RERAPIDFEIVAVNLD-QKQPGFPAEVLPTYLKS 99

Query: 76  VCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                RI     +S+V     + QT + +     R  ++   A  I AT I   H  DD 
Sbjct: 100 RGVEFRIEEQDTYSIVKRLVPEGQT-MCSLCSRLRRGVLYRVASEIGATKIALGHHRDDM 158

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           + T+ M        KGM        +  D    + RP       D+  +   R       
Sbjct: 159 VVTLLMNMFFGSRMKGM----PPKLVSDDGRHVVIRPLAYVAETDLERWAEHRAFPII-- 212

Query: 192 PS----NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVHM 246
           P     N ++  +RV++++ +R+ +          F  +   V ++ +   +  + T+  
Sbjct: 213 PCSLCGNQENL-QRVQIKKMIREWERQYPGRIDNMFTAMGNIVPSHMMDRKLYPFETLRA 271

Query: 247 RSIIAISQD 255
             +     D
Sbjct: 272 TGVADADGD 280


>gi|119472171|ref|ZP_01614373.1| hypothetical protein ATW7_08424 [Alteromonadales bacterium TW-7]
 gi|119445090|gb|EAW26384.1| hypothetical protein ATW7_08424 [Alteromonadales bacterium TW-7]
          Length = 303

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 88/262 (33%), Gaps = 25/262 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++V  F   +     I+V +SGG DS  +L  L  +   +    IKF  + V+  L +  
Sbjct: 26  QAVMDF-NMIEEGDRIMVCLSGGKDSYTMLEMLQHL---KRVAPIKFDLVVVN--LDQKQ 79

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V                   +     R  ++   AK + 
Sbjct: 80  PGFPEHVLPEYLDKLDVEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELG 139

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177
           AT I   H  DD +ET+++         G  L  M   ++ D     + RP   C+  DI
Sbjct: 140 ATKIALGHHRDDMIETLFLNMF-----YGGKLKSMPAKLMSDNGEHMVIRPLAYCKEADI 194

Query: 178 RSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +   +       P N     +  +R   +  +   +          F  ++  V + +
Sbjct: 195 SKYAFTQGYPII--PCNLCGSQENLQRKHTKNMLAQWNKDHPGRIESIFTAMQNVVPSHL 252

Query: 235 AMLIPKYLTVHMRSIIAISQDI 256
           A              +    DI
Sbjct: 253 ADAELFDFENLKTGEVIDGGDI 274


>gi|297537477|ref|YP_003673246.1| PP-loop domain-containing protein [Methylotenera sp. 301]
 gi|297256824|gb|ADI28669.1| PP-loop domain protein [Methylotenera sp. 301]
          Length = 301

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 81/216 (37%), Gaps = 22/216 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           +LV +SGG DS  +L+ L ++  +R+    K  A+++D   +     +     +      
Sbjct: 40  VLVCMSGGKDSHAMLMILLALQ-ERAPINFKLIAMNLD-QKQPGFPADILPAYF-----E 92

Query: 79  RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I + +V        K   P+     +     R  +I   AK + A  I   H  DD 
Sbjct: 93  KLGIDYRIVEADTYSIVKEKIPEGATTCSLCSRLRRGIIYTTAKKLGANKIALGHHRDDI 152

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190
           +ET+++        K M           D    + RP   C  +DI S+  Q        
Sbjct: 153 VETLFLNMFFGAKLKAM----PPKLSTNDKQNIVIRPLAYCSEKDIASYARQMEFPIIPC 208

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           D   + +  +R +V+  ++  +          F+ +
Sbjct: 209 DLCGSQENLQRQKVKDMLQAWEREQPGRINNIFRAI 244


>gi|261403320|ref|YP_003247544.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
 gi|261370313|gb|ACX73062.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
          Length = 305

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 20/216 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I V +SGG DS+ +   L       S    +     VD  ++       +YV + C   
Sbjct: 47  KIGVGISGGKDSLVMTYILKKFYD--SIPNSEIICFFVDEGIKGFRDVAKKYVVEFCKEF 104

Query: 81  RIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINATLIMT 124
            I   ++S+K     T                   +     R  L++++A   N T +  
Sbjct: 105 DIDLRIISFKEEINYTMDELVEKNYLKHLNIGKPCSFCGVVRRYLLNKYAFLNNCTYLAI 164

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  +T+ M       +    +    D       +   +P      E++  +    
Sbjct: 165 GHNLDDFCQTILMNYIEGNVKNI--IQFGKDVSSSTNFVKRIKPLKLIPEEEVILYAKLN 222

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220
           N+ + ++P        R ++++ +  ++     ++ 
Sbjct: 223 NLKYQKEPCPYSHLSYRYKIKKIIEMLEEDKPGVRF 258


>gi|293409739|ref|ZP_06653315.1| C32 tRNA thiolase [Escherichia coli B354]
 gi|291470207|gb|EFF12691.1| C32 tRNA thiolase [Escherichia coli B354]
          Length = 311

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKSITHGSEVVNGGDLAFDREEI 284


>gi|84499795|ref|ZP_00998083.1| hypothetical protein OB2597_07690 [Oceanicola batsensis HTCC2597]
 gi|84392939|gb|EAQ05150.1| hypothetical protein OB2597_07690 [Oceanicola batsensis HTCC2597]
          Length = 297

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 19/234 (8%)

Query: 4   SPIESVRFFVRSLV---YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +++VR  V         A  LV +SGG DS  LL  L+ +   R    ++  A ++D 
Sbjct: 27  RIVQNVREAVDRYGMVEPGARWLVCLSGGKDSYTLLAILYEL-KWRGLLPVELLACNLD- 84

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113
             +         + +   R+ + H +       V            A     R   +   
Sbjct: 85  --QGQPGFPATVLPEFLERMGVPHRIEFQDTYSVVVDKVPQGRTYCALCSRLRRGNLYRI 142

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+    + ++  H  DD LET +M         G   +     +  + +L++ RP     
Sbjct: 143 AREEGCSAVVLGHHRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVA 198

Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             D   F    N      D   + D  +R +V++ +   + +A   +   F+ L
Sbjct: 199 EADCERFARAMNYPIIPCDLCGSQDGLQRQQVKQILDGWERNAPGRRQVMFRAL 252


>gi|301025572|ref|ZP_07189095.1| PP-loop family protein [Escherichia coli MS 69-1]
 gi|300395892|gb|EFJ79430.1| PP-loop family protein [Escherichia coli MS 69-1]
          Length = 311

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDTLQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   L
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEL 284


>gi|224550203|gb|ACN54186.1| putative cell cycle protein MesJ [Wolbachia endosymbiont of Nasonia
           longicornis]
          Length = 150

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LK 219
           I RP L   R +I  +     + W ED SN D ++ R   R  ++  D   +      L 
Sbjct: 1   IFRPLLNFSRSEIEKYAKLHQLRWIEDRSNYDLKYRRTLYRNLLKASDNQDVLTERICLT 60

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQ 278
               +     + +   + +   + VH    I I   +   +   +   LL  S      +
Sbjct: 61  ALHMKRAAKALMHYTRLALNDCVNVHDLGYIEIKLSEFYQLPEEIALRLLLYSIMAIVNK 120

Query: 279 ISLPGYRSMERVMLFLKS 296
              P YRS+  +   +  
Sbjct: 121 HYKPRYRSLIAIFNKISQ 138


>gi|255318930|ref|ZP_05360156.1| PP-loop domain protein [Acinetobacter radioresistens SK82]
 gi|262378818|ref|ZP_06071975.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164]
 gi|255304186|gb|EET83377.1| PP-loop domain protein [Acinetobacter radioresistens SK82]
 gi|262300103|gb|EEY88015.1| tRNA(Ile)-lysidine synthetase [Acinetobacter radioresistens SH164]
          Length = 300

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 81/240 (33%), Gaps = 23/240 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F + +     ++V VSGG DS  LL  L      +    I F  ++V+    +   
Sbjct: 37  AIRDF-KMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDVVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + +       ++ + +       A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD L T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +   R       P N     +  +R  +   +RD D          F  L+    + +A 
Sbjct: 207 YAELRQFPII--PCNLCGSQENLQRAIINDMLRDWDKAHPKRLHSIFGALQNVSPSQLAD 264


>gi|323492659|ref|ZP_08097803.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio brasiliensis
           LMG 20546]
 gi|323313034|gb|EGA66154.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Vibrio brasiliensis
           LMG 20546]
          Length = 310

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 86/267 (32%), Gaps = 42/267 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              I+V +SGG DS  +L  L S+        I FS ++V+          H L E    
Sbjct: 40  GDRIMVCLSGGKDSFTMLDILMSLQKS---APISFSLVAVNLDQKQPGFPGHILPE---- 92

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATL 121
                      L + + +V                   +     R  ++   A  + AT 
Sbjct: 93  -------YLESLGVEYKIVEEDTYSIVQDKIPEGKTTCSLCSRLRRGILYRTANELGATK 145

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSF 180
           I   H  DD LET+++            +  M   ++ D     + RP   CR +DI  +
Sbjct: 146 IALGHHRDDILETLFLNMFHGGK-----MKAMPPKLVSDNGEHVVIRPLAYCREKDIIKY 200

Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
              R       P N        +R  +++ + D D          F+ ++  V + +A  
Sbjct: 201 SEMREYPII--PCNLCGSQPNLQRQNIKQMLNDWDKRFPGRIETMFRAMQNVVPSHLADF 258

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264
                    +    I+   +  D   +
Sbjct: 259 ELFDFKSIDKDSGVINGGDIGFDKEEM 285


>gi|224550207|gb|ACN54188.1| putative cell cycle protein MesJ [Wolbachia endosymbiont of Nasonia
           longicornis]
          Length = 150

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LK 219
           I RP L   R +I  +     + W ED SN D ++ R   R  ++  D   +      L 
Sbjct: 1   IFRPLLNFSRNEIEKYAKLHQLRWIEDRSNYDLKYRRTLYRNLLKASDNQDVLTERICLT 60

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQ 278
               +     + +   + +   + VH    I I   +   +   +   LL  S      +
Sbjct: 61  ALHMKRAAKALMHYTRLALNDCVNVHDLGYIEIKLSEFYQLPEEIALRLLLYSIMAIVNK 120

Query: 279 ISLPGYRSMERVMLFLKS 296
              P YRS+  +   +  
Sbjct: 121 HYKPRYRSLIAIFNKISQ 138


>gi|84994388|ref|XP_951916.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65302077|emb|CAI74184.1| hypothetical protein, conserved [Theileria annulata]
          Length = 391

 Score = 89.6 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 37/227 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + + VSGG DS  L   L  +             + VD  ++    D ++ V  +    R
Sbjct: 52  VCIGVSGGKDSSVLAHVLSKIKEKYKM-DWNLYLLGVDEGIKGYRDDSLKVVKSIFKD-R 109

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              S+        + G        R  ++   A+   A ++ T H  DD  ETV +   R
Sbjct: 110 FGFSMDQVVKLIGKRGNCTVCGSFRRQMLEIGARIFGANVLCTGHNADDMAETVLLNLFR 169

Query: 142 DYAEKGM----------------GLSGMCDTILYDLNLWI-------------------S 166
               K                  G     D  +   N+ +                    
Sbjct: 170 GDLLKLTNSNITTYSINSVGELNGFKEDLDNQIDGKNVNLEIKSKLNQSTNNKLRKIKRV 229

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213
           +P      ++I  +    ++ +            R  +R F+++++L
Sbjct: 230 KPLKYSFEKEIVLYARYLSLDYFSTECIYSPEAYRGHMRSFIKNLEL 276


>gi|291544395|emb|CBL17504.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus sp. 18P13]
          Length = 276

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 77/237 (32%), Gaps = 29/237 (12%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L+ P   I V VSGG DSM L   +  +   R         +++D         +  + 
Sbjct: 35  ALIAPGDRIAVCVSGGKDSMLLAKLMQQLQRVRQ-NDFTLEFLTMDPGY------DPAHT 87

Query: 74  SDV---CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             +    + L I   V         +K            R   +   A+ +    I   H
Sbjct: 88  QQLLDNAALLGIPVQVFETNILRIVNKQAQHPCFLCARMRRGHLYAKAQALGCNKIALGH 147

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSFLLQR 184
            F+D +ET  M         G  +  M      D    + + RP      EDI ++    
Sbjct: 148 HFNDVIETTLMGML-----YGGQIQAMLPRRRSDNYDGMELIRPLYCVHEEDILAWRDAN 202

Query: 185 NISWCEDP------SNTDDRF-ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            + + +        S  D  +  R RV+  +  +   +  ++   F  +     +++
Sbjct: 203 ALHFLQCACRFTSRSQEDAAYSRRARVKALIAHLKTESPEVERSIFHSIHTVQLDSM 259


>gi|317055588|ref|YP_004104055.1| PP-loop domain-containing protein [Ruminococcus albus 7]
 gi|315447857|gb|ADU21421.1| PP-loop domain protein [Ruminococcus albus 7]
          Length = 294

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 65/202 (32%), Gaps = 37/202 (18%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI---------SVDHCLRETA 66
           +     I V +SGG DSM + + +  +     + K+ F  +          +++      
Sbjct: 37  IQEGDRIAVCISGGKDSMLMALCMKRLQ---RYSKVPFEVVFLVMDPGYNEINYQ----- 88

Query: 67  KDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               + V +    L I   V         +K            R   + + AK +    I
Sbjct: 89  ----KIVEN-AETLEIPIQVFKTGIFDAVAKVDEHPCYLCARMRRGHLYKTAKELGCNKI 143

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL--NLWISRPFLRCRREDIRSF 180
              H FDD +ET+ M         G  +  M   I  +    + + RP    R  DI  +
Sbjct: 144 ALGHHFDDVIETILMGML-----YGSQVQTMMPKIHSENYEGMQLIRPMYMVREADIIRW 198

Query: 181 LLQRNISWCEDPSNTDDRFERV 202
               ++ + +       RF   
Sbjct: 199 KQYNDLQFIQCAC----RFTEN 216


>gi|171323015|ref|ZP_02911676.1| PP-loop domain protein [Burkholderia ambifaria MEX-5]
 gi|171091602|gb|EDT37193.1| PP-loop domain protein [Burkholderia ambifaria MEX-5]
          Length = 338

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 88/276 (31%), Gaps = 25/276 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 48  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 106

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 107 LD-QKQPG---FPEHVLPEYLTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 162

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD L+T+ +        KGM      D    D    + RP 
Sbjct: 163 LYRVAGELGATKIALGHHRDDILQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPL 218

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  F   R       P N        +R  ++  +RD D          F  L
Sbjct: 219 AYVKETDLEKFAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFSAL 276

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
              V + +             +  A  Q  +  D  
Sbjct: 277 ANVVPSHLMDTTQFPFASLRATGQADPQGDIAFDEE 312


>gi|319426422|gb|ADV54496.1| PP-loop domain protein [Shewanella putrefaciens 200]
          Length = 310

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 78/200 (39%), Gaps = 22/200 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++   R+  + +  A+++D   +    +++        +L++ + 
Sbjct: 44  LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPGFPEDILPA--YLDKLKVPYH 99

Query: 86  VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 100 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFLN 159

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195
                   G  +  M   +L D    I  RP   CR +D+  +   +       P N   
Sbjct: 160 MF-----FGGKMKAMPPKLLSDDGANIVIRPLAYCREKDLEEYAQLKQFPII--PCNLCG 212

Query: 196 -DDRFERVRVRRFVRDIDLH 214
             +  +R  V+  +   D  
Sbjct: 213 SQENLKRAAVKDMLNQWDRQ 232


>gi|325294837|ref|YP_004281351.1| PP-loop domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065285|gb|ADY73292.1| PP-loop domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 312

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +L+AVSGG DS+ L  ALH +        I            E +K  +       
Sbjct: 51  KDEKVLIAVSGGKDSLSLWYALHRLGYKTYGFHISLGI----EGW-EYSKKSLDICKKFS 105

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAA----RE---------ARYALISEHAKTINATLIMT 124
            R+     +   K+      +   A    R+          RY L+++  K     ++ T
Sbjct: 106 ERIERPLIIFDIKDEF-GYSIEEIAKGSGRKDVCSVCGTFKRY-LMNKICKEQGFKVVAT 163

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPFLRCRREDIRSFLL 182
            H  DD  E+       +     +G  G    +L + N      +PF+    ++I S+ +
Sbjct: 164 GHNLDD--ESAL--LLSNTIRWEIGYLGRQHPVLPEKNGFARKVKPFVFFTEKEIVSYAI 219

Query: 183 QRNISWCE 190
              I + E
Sbjct: 220 LNKIEYLE 227


>gi|311279743|ref|YP_003941974.1| PP-loop domain-containing protein [Enterobacter cloacae SCF1]
 gi|308748938|gb|ADO48690.1| PP-loop domain protein [Enterobacter cloacae SCF1]
          Length = 311

 Score = 89.6 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 20/197 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT 195
            F   +       P N 
Sbjct: 198 RFAQAKAFPII--PCNL 212


>gi|30249461|ref|NP_841531.1| hypothetical protein NE1490 [Nitrosomonas europaea ATCC 19718]
 gi|75540489|sp|Q82UJ4|TTCA_NITEU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|30138824|emb|CAD85401.1| Uncharacterized protein family UPF0021 [Nitrosomonas europaea ATCC
           19718]
          Length = 314

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 85/262 (32%), Gaps = 24/262 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS  LL  L ++ +       +  A+++D   +        +V    
Sbjct: 37  KGDRVMVCLSGGKDSYALLDILRNLQAHAPL-DFELIAVNLD-QKQPG---FPEHVLPGY 91

Query: 77  CSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            S + +   +V         +         +     R  ++   A  + AT I   H  D
Sbjct: 92  LSEINMPFRIVEQDTYSVVKRVIAEGKTTCSLCSRLRRGVLYRVATELGATKIALGHHRD 151

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D LET ++         G  L  M   ++ D     + RP   C+ +D+ ++        
Sbjct: 152 DILETFFLNMF-----YGGKLKAMPPKLVSDDGCHVVIRPLAYCKEKDLAAYAWHAQFPI 206

Query: 189 CEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
              P N        +R  ++  ++  D          F  L+    + +A          
Sbjct: 207 I--PCNLCGSQPNLQRQVIKEMMQQWDKKYPGRLETMFTALQNIQLSHLADTSRYDFVGL 264

Query: 246 MRSIIAISQDILNIDSTLLFYL 267
               IAI +     D   L  +
Sbjct: 265 KPHGIAIEEGDKAFDEEPLSVI 286


>gi|284007458|emb|CBA72913.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 324

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/222 (22%), Positives = 80/222 (36%), Gaps = 22/222 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I+V +SGG DS  LL  L ++            AI++D   +     ++        +
Sbjct: 56  DRIMVCLSGGKDSYTLLSILQNLQKSAPV-NFTLFAINLD-QKQPGFPADILP--SYLDK 111

Query: 80  LRIAHSVVS------WKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           L I + +V+       K   P      +     R  ++   A  + AT I   H  DD L
Sbjct: 112 LGIEYQIVTENTYAIVKEKIPAGKTTCSLCSRLRRGILYRTASELGATKIALGHHRDDIL 171

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCED 191
           +TV++         G  L GM   ++ D    I  RP   CR +DI  +   +       
Sbjct: 172 QTVFLNMF-----YGGKLKGMPPKLMSDNGKHIVIRPLAYCREKDIAHYAKIKEFPII-- 224

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           P N        +R  +   +R+ D          FQ ++  V
Sbjct: 225 PCNLCGSQPNLQRQVIGNMLREWDKQYPGRIETMFQAMQNIV 266


>gi|262376609|ref|ZP_06069837.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter
           lwoffii SH145]
 gi|262308319|gb|EEY89454.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter
           lwoffii SH145]
          Length = 308

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 84/260 (32%), Gaps = 24/260 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F + +     ++V +SGG DS  LL  L      +    I F  ++V+    +   
Sbjct: 37  AIRDF-KMIEEGDKVMVCISGGKDSYTLLDILLQF---KRIAPINFDVVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + +       ++ K +       A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYLEENNIPYYILEKDTYSITKKLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD L T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVA 235
           +   R       P N     D  +R  +   +RD D          F  L+    +  V 
Sbjct: 207 YAEMRQFPII--PCNLCGSQDNLQRAIINDMLRDWDKAHPKRLHSIFGALQNVSPSQLVD 264

Query: 236 MLIPKYLTVHMRSIIAISQD 255
             +  +  +  +        
Sbjct: 265 RELFDFEVLDSQREFDFKGG 284


>gi|218282849|ref|ZP_03489002.1| hypothetical protein EUBIFOR_01588 [Eubacterium biforme DSM 3989]
 gi|218216305|gb|EEC89843.1| hypothetical protein EUBIFOR_01588 [Eubacterium biforme DSM 3989]
          Length = 378

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 57/176 (32%), Gaps = 19/176 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVRYVSDVCSR 79
           I V +SGG DSM   +             + F    I +D    +   D +        R
Sbjct: 136 IAVCISGGKDSM---LMAKCFQELHKHSPVPFDVKYIVMDPGYSKENHDVIE---RNAQR 189

Query: 80  LRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           L I   +            +          R   +  +AK +    I   H +DD +ET+
Sbjct: 190 LNIPIEIFESDIFDNVFNIEKNPCYICARMRRGHLYNYAKNLGCNKIALGHHYDDVIETI 249

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSFLLQRNISWC 189
            M         G  +  M   +  +    + + RP      +DI+++    ++ + 
Sbjct: 250 LMSML-----YGGQIQTMMPKLHSNNFKGMEVIRPLYLIHEDDIKAWAKHNDLYFI 300


>gi|325123160|gb|ADY82683.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Acinetobacter calcoaceticus PHEA-2]
          Length = 301

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 84/268 (31%), Gaps = 21/268 (7%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F   +     ++V VSGG DS  LL  L      +    I F  ++V+    +   
Sbjct: 37  AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFEVVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + +       ++ + +       A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD + T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +   R       P N     +    R  + ++         K+   +   + N     + 
Sbjct: 207 YAEIRQFPII--PCNLCGS-QENLQRAMLNEMLREWDKQYPKRLHSIFGALQNVSPSQLA 263

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL 267
                   ++ +  +  +     L   L
Sbjct: 264 DRELFDFEALDSQRELDIKDPEELKNRL 291


>gi|134045267|ref|YP_001096753.1| PP-loop domain-containing protein [Methanococcus maripaludis C5]
 gi|132662892|gb|ABO34538.1| PP-loop domain protein [Methanococcus maripaludis C5]
          Length = 311

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 63/188 (33%), Gaps = 20/188 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + + +SGG DS+ +   L+    +      K  AI V+  +     D +      C + 
Sbjct: 48  KVAMGLSGGKDSLVMAYLLNEFYKE--IPNSKIIAIMVNEGIEGYRLDGIEAAVKFCEKH 105

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            I + +V +K+                       +     R  +++  +       +   
Sbjct: 106 DIEYKIVQFKDYLGTNLDEIVKLAKEKNLTMNPCSFCGVIRRKILNRVSIEEKCDFLAIG 165

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD  + V M       +K   L+ +  ++ +   +   +P  +   +++        
Sbjct: 166 HNLDDIAQAVMMNYIEGDVKK---LAFLGKSLKHPKFVKRIKPLEKIPEDEVLLLADMLE 222

Query: 186 ISWCEDPS 193
           +++ + P 
Sbjct: 223 LTYHKSPC 230


>gi|54022352|ref|YP_116594.1| hypothetical protein nfa3880 [Nocardia farcinica IFM 10152]
 gi|61216446|sp|Q5Z2W1|TILS_NOCFA RecName: Full=tRNA(Ile)-lysidine synthase; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|54013860|dbj|BAD55230.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 318

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 74/192 (38%), Gaps = 17/192 (8%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG+DS+       ++ +          A+ VDH L+  +       +     L    +
Sbjct: 25  LSGGADSL-------ALTAAAVVEAATVDALVVDHGLQPGSDAVAVAAAAQARTLGCRSA 77

Query: 86  VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145
            V         GL AAAREARYA +      +    ++  HT DDQ ETV +   R    
Sbjct: 78  RVLRVRVGSDGGLEAAAREARYAALGSARAGLP---VLLGHTLDDQAETVLLGLARGSGA 134

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           +   + GM             RP L  RR D R       ++  EDP N    F RVR+R
Sbjct: 135 R--SIRGMAAYTPPWG-----RPLLGVRRADTRRLCADLGLTPHEDPHNRSAEFTRVRLR 187

Query: 206 RFVRDIDLHALY 217
             V  +    L 
Sbjct: 188 TEVLPLLEDVLG 199


>gi|120598865|ref|YP_963439.1| C32 tRNA thiolase [Shewanella sp. W3-18-1]
 gi|146293047|ref|YP_001183471.1| C32 tRNA thiolase [Shewanella putrefaciens CN-32]
 gi|205830630|sp|A4Y6T9|TTCA_SHEPC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830631|sp|A1RJP0|TTCA_SHESW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|120558958|gb|ABM24885.1| PP-loop domain protein [Shewanella sp. W3-18-1]
 gi|145564737|gb|ABP75672.1| PP-loop domain protein [Shewanella putrefaciens CN-32]
          Length = 310

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 78/200 (39%), Gaps = 22/200 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++   R+  + +  A+++D   +    +++        +L++ + 
Sbjct: 44  LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPGFPEDILPA--YLDKLKVPYH 99

Query: 86  VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 100 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFLN 159

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195
                   G  +  M   +L D    I  RP   CR +D+  +   +       P N   
Sbjct: 160 MF-----FGGKMKAMPPKLLSDDGANIVIRPLAYCREKDLEEYAQLKQFPII--PCNLCG 212

Query: 196 -DDRFERVRVRRFVRDIDLH 214
             +  +R  V+  +   D  
Sbjct: 213 SQENLKRAAVKDMLNQWDRQ 232


>gi|300692819|ref|YP_003753814.1| ATP pyrophosphatase [Ralstonia solanacearum PSI07]
 gi|299079879|emb|CBJ52557.1| putative ATP pyrophosphatase [Ralstonia solanacearum PSI07]
          Length = 312

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 88/256 (34%), Gaps = 22/256 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            + +     +LV +SGG DS  +L  L ++   R+    K  A+++D   +    ++V  
Sbjct: 25  FKMIEGGDTVLVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEDVLP 82

Query: 73  VSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
                 +L + + +V                   +     R  +I   AK + A+ I   
Sbjct: 83  --TYLKKLGVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGASKIALG 140

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQR 184
           H  DD + T ++        K      M   +  D    I  RP   C  +DI ++    
Sbjct: 141 HHRDDIVNTFFLNMFFGGKMKS-----MPPKLATDNGDHIVIRPLAYCAEKDIAAYARAM 195

Query: 185 NISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
                  P N     +  +R +V+  + + +          F  L+  V + +A      
Sbjct: 196 EFPII--PCNLCGSQENLQRKKVKEMLLEWERQTPGRIDNIFSALQNVVPSHLADTELFD 253

Query: 242 LTVHMRSIIAISQDIL 257
            +     +  I ++ L
Sbjct: 254 FSGLTTGLAKIGEEAL 269


>gi|262195762|ref|YP_003266971.1| PP-loop domain protein [Haliangium ochraceum DSM 14365]
 gi|262079109|gb|ACY15078.1| PP-loop domain protein [Haliangium ochraceum DSM 14365]
          Length = 292

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 81/240 (33%), Gaps = 18/240 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  LL  L  +L  R+  + +  A++VD   +     +   +++  +
Sbjct: 53  GDRIMVCISGGKDSYALLEVL-RILQRRAPVRFELLAVNVD---QGWPGYDTAIIAEHLA 108

Query: 79  RLRIA-------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +         + V   N  P     +     R  ++   A     T I   H  DD 
Sbjct: 109 STGVPYRMITRDFASVVEANLAPGATPCSLCSRLRRGVLYNLAGEFACTKIALGHHADDL 168

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE- 190
           +ET+ +         G   +        D    + RP        + S+  +R       
Sbjct: 169 IETLMLNLM----YSGKLAAMPAKLHSDDGRNTVIRPLAYVPEALLSSYAQEREFPVVRC 224

Query: 191 -DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL-RVKVNNAVAMLIPKYLTVHMRS 248
             PS      +R  V+R ++ ++     +K      L  +K +  +   +      H R 
Sbjct: 225 GCPSCGLPEQKRQVVKRLLQSLEEADPGVKHHMLAALGNIKPSQLLDRALQGQADQHERG 284


>gi|327254039|gb|EGE65668.1| PP-loop family protein [Escherichia coli STEC_7v]
          Length = 311

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L I + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|323977023|gb|EGB72110.1| ydaO protein [Escherichia coli TW10509]
          Length = 311

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L I + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|323964520|gb|EGB59995.1| ydaO protein [Escherichia coli M863]
          Length = 311

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L I + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|300904997|ref|ZP_07122815.1| PP-loop family protein [Escherichia coli MS 84-1]
 gi|301305839|ref|ZP_07211924.1| PP-loop family protein [Escherichia coli MS 124-1]
 gi|300403146|gb|EFJ86684.1| PP-loop family protein [Escherichia coli MS 84-1]
 gi|300838929|gb|EFK66689.1| PP-loop family protein [Escherichia coli MS 124-1]
 gi|315254387|gb|EFU34355.1| PP-loop family protein [Escherichia coli MS 85-1]
          Length = 311

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGINHGSEVVNGGDLAFDREEI 284


>gi|153812311|ref|ZP_01964979.1| hypothetical protein RUMOBE_02710 [Ruminococcus obeum ATCC 29174]
 gi|149831718|gb|EDM86805.1| hypothetical protein RUMOBE_02710 [Ruminococcus obeum ATCC 29174]
          Length = 291

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 37/207 (17%)

Query: 2   FLSPI-----ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           F  PI     +++R +   LV     I V +SGG DSM +      +      GK  F  
Sbjct: 28  FRKPIWRRFTKAIREY--ELVQDGDKIAVCISGGKDSMLMAKLFQELS---RHGKKNFEV 82

Query: 56  I---------SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAA 102
           +          +++          + + D    L +  +V         +  +       
Sbjct: 83  VFLVMNPGYNEINY----------QTIKDNAQILNVPITVFESDIFNIVASEEQSPCYLC 132

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
              R   +   AK +    I   H +DD +ET+ M        + M       +  ++  
Sbjct: 133 ARMRRGYLYSKAKELGCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-G 189

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWC 189
           + + RP    R  DI  +    ++ + 
Sbjct: 190 MELIRPLYLIREADIIHWANYNDLHFI 216


>gi|241661692|ref|YP_002980052.1| C32 tRNA thiolase [Ralstonia pickettii 12D]
 gi|240863719|gb|ACS61380.1| PP-loop domain protein [Ralstonia pickettii 12D]
          Length = 315

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 22/247 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV +SGG DS  +L  L ++   R+    K  A+++D   +    +EV    +   ++ 
Sbjct: 34  ILVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEEVLP--NYLKKVG 89

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +V                   +     R  +I   AK + A  I   H  DD + T
Sbjct: 90  VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++        K      M   +  D    I  RP   C  +DI S+           P 
Sbjct: 150 FFLNMFFGGKMKS-----MPPKLATDNGDHIVIRPLAYCAEKDIASYARAMEFPII--PC 202

Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N     +  +R +V+  + + +          F  L+  V + +A             + 
Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQTPGRIDNIFASLQNVVPSHLADTDLFDFNGLTTGLA 262

Query: 251 AISQDIL 257
            I +D L
Sbjct: 263 KIGEDAL 269


>gi|237736916|ref|ZP_04567397.1| PP family ATPase [Fusobacterium mortiferum ATCC 9817]
 gi|229420778|gb|EEO35825.1| PP family ATPase [Fusobacterium mortiferum ATCC 9817]
          Length = 281

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 33/240 (13%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             I++V+ F   L+     I V VSGG DS+ L      +  DRS    + + IS++   
Sbjct: 39  KFIKAVKDF--ELIEDGDRIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVAFISMNPGF 95

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQ--TGLMAAAREARYALISEHAKTI 117
              A D  ++  ++   L I   +     W+ +  +   G      + R  ++    + +
Sbjct: 96  --GAMDMEQFKKNL-EELDIPCEIFDANVWEVAFREDPEGPCFLCAKMRRGVLYNKVEEL 152

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +         G   + +         + + RP +  + +DI
Sbjct: 153 GYNKLALGHHFDDVVETTMINMF----YAGTVKTMIPKVSSTSGKMAVIRPLVYIKEKDI 208

Query: 178 RSFLLQRNIS------WCE----DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            ++  +  I         E    D        +R  ++  + +I+     +K   F  ++
Sbjct: 209 IAYTQRNEIKAMSCGCPIESGKVDS-------KRKEIKNLLAEIEKANPNVKQSIFNSMK 261


>gi|77360792|ref|YP_340367.1| hypothetical protein PSHAa1852 [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123588359|sp|Q3IHG8|TTCA_PSEHT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|76875703|emb|CAI86924.1| conserved protein of unknown function, contains adenine nucleotide
           alpha hydrolase domain [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 304

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 22/198 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++V  F   +     I+V +SGG DS  +L  L  +   +    IKF    V+  L +  
Sbjct: 26  QAVMDF-NMIEEGDRIMVCLSGGKDSYTMLDMLQHL---KRVAPIKFELFVVN--LDQKQ 79

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V      +L + + +V                   +     R  ++   AK + 
Sbjct: 80  PGFPEHVLPQYLDKLNVEYKIVEEDTYSIVTDIIPEGKTTCSLCSRLRRGILYRTAKELG 139

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177
           AT I   H  DD +ET+++         G  L  M   ++ D     + RP   C+  DI
Sbjct: 140 ATKIALGHHRDDMIETLFLNMF-----YGGKLKSMPAKLMSDNGEHMVIRPLAYCKESDI 194

Query: 178 RSFLLQRNISWCEDPSNT 195
             +   +       P N 
Sbjct: 195 SQYAFVQGYPII--PCNL 210


>gi|218700064|ref|YP_002407693.1| C32 tRNA thiolase [Escherichia coli IAI39]
 gi|254790123|sp|B7NHP6|TTCA_ECO7I RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|218370050|emb|CAR17826.1| putative C32 tRNA thiolase [Escherichia coli IAI39]
          Length = 311

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +++  L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNRGDLAFDREEI 284


>gi|238796410|ref|ZP_04639919.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia mollaretii
           ATCC 43969]
 gi|238719855|gb|EEQ11662.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia mollaretii
           ATCC 43969]
          Length = 318

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L S+            A+++D   +    +++        
Sbjct: 44  GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 99

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 100 KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 159

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 160 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII-- 213

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +              
Sbjct: 214 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHNLFDFKGITHG 273

Query: 249 IIAISQDILNIDSTLL 264
              +    L  D   L
Sbjct: 274 SEVVDGGDLAFDREEL 289


>gi|254292919|ref|YP_003058942.1| PP-loop domain protein [Hirschia baltica ATCC 49814]
 gi|254041450|gb|ACT58245.1| PP-loop domain protein [Hirschia baltica ATCC 49814]
          Length = 303

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 24/236 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            +    P   +V +SGG DS  L+ AL  +   +  G +    + V+  L +      ++
Sbjct: 61  AKKRETPYKWMVCLSGGKDSYTLMAALLDL---KWQGALPVDLLFVN--LDQGQPGFPKH 115

Query: 73  VS-DVCSRLRIAHSVVS------WKNSKP-QTGLMAAAREARYALISEHAKTINATLIMT 124
           +  D  + L + + +++       K   P +    A     R  ++   A+      I+ 
Sbjct: 116 ILPDYLTSLGVDYRIITEDTYSIVKEKTPAKATYCALCSRLRRGILYNAAREEGCDAIVL 175

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQ 183
            H  DD LET  M            L+ M  T+L D   + + RP L C   DI  F   
Sbjct: 176 GHHRDDALETFMMNLFHGGR-----LAAMPPTLLNDEGDIKVHRPLLHCAESDIERFSKA 230

Query: 184 RNISWCEDPSN---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            N      P N   T +  +R  +++ + + +  A   +   F+ L+    + +A 
Sbjct: 231 MNFPII--PCNLCGTQEGLQRNAMKQMLNEWEQKAPGRRQTMFRALKNVRPSHLAD 284


>gi|331652394|ref|ZP_08353413.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331050672|gb|EGI22730.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 311

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKIKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|77747507|ref|NP_297859.2| C32 tRNA thiolase [Xylella fastidiosa 9a5c]
 gi|205830738|sp|Q9PFT8|TTCA_XYLFA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 299

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 21/185 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
             I+V +SGG DS  LL  L  + +       + +A+++D   +       ++V  +  S
Sbjct: 49  DKIMVCLSGGKDSYTLLDMLLQLRAKAPVP-FELTAVNLD-QKQPG---FPKHVLPEYLS 103

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + H +       V  +       L A     R   +  +A+T   T I   H  DD 
Sbjct: 104 SIGMPHHIIEQDTYSVVTRVVPEGKTLCALCSRMRRGALYAYAETQGFTKIALGHHRDDM 163

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           + T +M            LSGM   +  D     + RP       DI ++   R      
Sbjct: 164 VATFFMNLFHHAK-----LSGMPPKLRSDNGKHVVIRPLAYVSETDIIAYADAREFPII- 217

Query: 191 DPSNT 195
            P N 
Sbjct: 218 -PCNL 221


>gi|253995663|ref|YP_003047727.1| PP-loop domain-containing protein [Methylotenera mobilis JLW8]
 gi|253982342|gb|ACT47200.1| PP-loop domain protein [Methylotenera mobilis JLW8]
          Length = 301

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 22/216 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVCS 78
           +LV +SGG DS  +L+ L ++  +R+    K  A+++D   +     +     +      
Sbjct: 40  VLVCMSGGKDSHAMLMILLALQ-ERAPINFKLIAMNLD-QKQPGFPADILPAYF-----E 92

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I + +V                   +     R  +I   AK + A  I   H  DD 
Sbjct: 93  KLGIDYRIVDADTYSIVKEKIPEGRTTCSLCSRLRRGVIYTTAKELGANKIALGHHRDDI 152

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190
           +ET+++        K M           D    + RP   C  +DI S+  Q        
Sbjct: 153 VETLFLNLFFGAKMKAM----PPKLATNDKQNIVIRPLAYCSEKDIASYARQMEFPIIPC 208

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           D   + +  +R +V+  ++  +          F+ +
Sbjct: 209 DLCGSQENLQRQKVKDMLQAWEREQPGRINNIFRAI 244


>gi|170726762|ref|YP_001760788.1| C32 tRNA thiolase [Shewanella woodyi ATCC 51908]
 gi|205830632|sp|B1KFY6|TTCA_SHEWM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|169812109|gb|ACA86693.1| PP-loop domain protein [Shewanella woodyi ATCC 51908]
          Length = 319

 Score = 89.2 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 22/213 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L  +   R+  K +  A+++D   +        +V       L +A+
Sbjct: 44  LSGGKDSYAMLDILLDLQ-QRAPIKFEIVAVNLD-QKQPG---FPEHVLPAYLDSLGVAY 98

Query: 85  SVVS------WKNSKPQT-GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++        ++  P+     +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 99  HILEKDTYSIVRDKIPEGQKTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETLFL 158

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195
                    G   +     +  D    + RP    R +DI  +   +       P N   
Sbjct: 159 NMF----FAGKQKAMPPKLLSDDGANMVIRPLAYAREKDIAEYAELKGFPII--PCNLCG 212

Query: 196 -DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +  +R  V+  +   D+         F  ++
Sbjct: 213 SQENLKRASVKEMLNQWDVEHPGRIESIFTAMQ 245


>gi|20094539|ref|NP_614386.1| ATPase [Methanopyrus kandleri AV19]
 gi|19887658|gb|AAM02316.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 303

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 17/247 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       I+VA+SGG DS   L  +   +      +++  A++VD  +       +R  
Sbjct: 43  RWFRPGQRIVVALSGGKDSSLALRLVTEYVE--PLPEVEVIALTVDEGISGFRDACLRAA 100

Query: 74  SDVCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             V   L + H VVS++                         R  L++  A+ + A +++
Sbjct: 101 ERVADELDVEHEVVSFEEEYGFALEEVVEDVDVSACTLCGVLRRRLLNRRARELGADVVV 160

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFL 181
           T H  DD+ +   M   +        L+ +   +  + +L +   +P       ++R   
Sbjct: 161 TGHNLDDEAQAALMNFVK---ADLAQLARLHPEVRPEDDLIVPRVKPLRGVPEREVRWVA 217

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            +  + +  DP        R   R  + +++     +K    + L           + + 
Sbjct: 218 EELGLPFHADPCPYARFSVRSFFREILDEMEERLPDVKFGLVRALDRAGPVLAEAFLEEG 277

Query: 242 LTVHMRS 248
           L    R 
Sbjct: 278 LGRCERC 284


>gi|253582348|ref|ZP_04859571.1| PP family ATPase [Fusobacterium varium ATCC 27725]
 gi|251835887|gb|EES64425.1| PP family ATPase [Fusobacterium varium ATCC 27725]
          Length = 267

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 82/240 (34%), Gaps = 33/240 (13%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++++ F  +L+     I V VSGG DS+ L      +  DRS    + + IS++   
Sbjct: 22  KFVKAIKDF--NLIEDGDRIAVGVSGGKDSLLLCKLFQEMKKDRS-KNFEVAFISMNPGF 78

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTI 117
              A D  ++       L I   V           +          + R  ++    + +
Sbjct: 79  --EALDMEKF-KTNLEELGIPCEVFEANVWEIAFKEDPESPCFLCAKMRRGVLYNRVEEL 135

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +         G   + +         + + RP +  + +DI
Sbjct: 136 GYNKLALGHHFDDVVETTMINMF----YAGTVKTMIPKVKSTSGKMELIRPMVYIKEKDI 191

Query: 178 RSFLLQRNIS------WCE----DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            ++  +  I         E    D        +R  ++  +  ++     +K   F  ++
Sbjct: 192 IAYTQRNEIEAMGCGCPVESGKTDS-------KRKEIKNLLAKLEEQNPNVKQSIFNSMK 244


>gi|226356848|ref|YP_002786588.1| hypothetical protein Deide_18460 [Deinococcus deserti VCD115]
 gi|226318838|gb|ACO46834.1| Conserved hypothetical protein, precursor [Deinococcus deserti
           VCD115]
          Length = 300

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 74/189 (39%), Gaps = 17/189 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--R 71
           R +     ++V +SGG DS  LL  L  +       + +  A+++D   +     +V  R
Sbjct: 37  RMIEEGDRVMVCLSGGKDSYTLLDVLLHLQRKAPI-RFEIVAVNLDQG-QPGFPQDVLPR 94

Query: 72  YVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           Y++ +  R  I     +SVV  K  + +T   A     R  ++  HA+ I AT I   H 
Sbjct: 95  YLTGMGVRHDILTQDTYSVVKEKTPEGKT-TCALCSRLRRGILYAHARRIGATKIALGHH 153

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186
            DD LET++M         G  L  M   +  D     + RP       DI  +   R  
Sbjct: 154 RDDILETMFMNLF-----FGARLKAMPPKLQSDDGTNVVIRPLAYVAESDIIRYAQAREF 208

Query: 187 SWCEDPSNT 195
                P N 
Sbjct: 209 PII--PCNL 215


>gi|296314111|ref|ZP_06864052.1| PP-loop family protein [Neisseria polysaccharea ATCC 43768]
 gi|296839261|gb|EFH23199.1| PP-loop family protein [Neisseria polysaccharea ATCC 43768]
          Length = 319

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 90/274 (32%), Gaps = 33/274 (12%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  +++ P   I+V +SGG DS  LL  L  + +       +  A+++D   +  
Sbjct: 24  DAINDF--NMIEPGDKIMVCLSGGKDSYALLDILRQLQASAPI-DFELVAVNLD-QKQPG 79

Query: 66  AKDEVRYVSD----VCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHA 114
                 +           + + + +V         +         +     R  ++   A
Sbjct: 80  ------FPEKVLPTYLESIGVPYKIVEEDTYSTVKRVLDEGKTTCSLCSRLRRGILYRTA 133

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCR 173
           K +  T I   H  DD L T+++         G  L  M   ++ D +  I  RP    +
Sbjct: 134 KELGCTKIALGHHRDDILATMFLNMF-----YGGKLKAMPPKLVSDNSEHIVIRPLAYVK 188

Query: 174 REDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            +D+  +   +       P N        +R  +   +RD D          F  L+  V
Sbjct: 189 EKDLIKYAELKQFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRFPGRIESMFSALQNVV 246

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            + +A           R         L  DS  +
Sbjct: 247 PSHLADTELFDFVGLERGQSLKHGGDLAFDSEKM 280


>gi|295109785|emb|CBL23738.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ruminococcus obeum A2-162]
          Length = 383

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 37/207 (17%)

Query: 2   FLSPI-----ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           F  PI     +++R +   LV     I V +SGG DSM +      +      GK  F  
Sbjct: 120 FRKPIWRRFTKAIREY--ELVQDGDKIAVCISGGKDSMLMAKLFQELS---RHGKKNFEV 174

Query: 56  I---------SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAA 102
           +          +++          + + D    L +  +V         +  +       
Sbjct: 175 VFLVMNPGYNEINY----------QTIKDNAKILNVPITVFESDIFNIVASEEQSPCYLC 224

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
              R   +   AK +    I   H +DD +ET+ M        + M       +  ++  
Sbjct: 225 ARMRRGYLYSKAKELGCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-G 281

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWC 189
           + + RP    R  DI  +    ++ + 
Sbjct: 282 MELIRPLYLIREADIIHWANYNDLHFI 308


>gi|154505074|ref|ZP_02041812.1| hypothetical protein RUMGNA_02584 [Ruminococcus gnavus ATCC 29149]
 gi|153794553|gb|EDN76973.1| hypothetical protein RUMGNA_02584 [Ruminococcus gnavus ATCC 29149]
          Length = 391

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 12/192 (6%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F    ++VR +   +     I V +SGG DSM +      +     F   +   + +D 
Sbjct: 131 LFSRFAKAVREY-ELVQEGDRIAVCISGGKDSMLMAKLFQELKKHNKFP-FEVEYLVMD- 187

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
                ++   + +      + I   +            +          R   +   AK 
Sbjct: 188 --PGYSELNRKLIEQNAKMMGIPIKIFESDIFDAVFDVEKSPCYLCARMRRGHLYSKAKE 245

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    I   H +DD +ET+ M        + M       +  ++  + + RP    R +D
Sbjct: 246 LGCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPLYLVREDD 302

Query: 177 IRSFLLQRNISW 188
           I+ +    ++ +
Sbjct: 303 IKHWRDYNHLHF 314


>gi|328866572|gb|EGG14956.1| hypothetical protein DFA_10830 [Dictyostelium fasciculatum]
          Length = 682

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 2/116 (1%)

Query: 90  KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149
           +  +P T +    R  R  L++  AK  N+  I+     DD +ET   R Q     +G  
Sbjct: 262 EEGQPLTAIQEICRYKRLELLTSVAKKFNSPAILMGTNKDDNIETFIHRIQFASGIEG-- 319

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
           L+ +        ++ + RP L   ++ +        IS+  D +N    FER R+R
Sbjct: 320 LASIEPISPLSASISLHRPLLTFSKDSLFGLCNHFGISFNHDTANDSLDFERNRIR 375


>gi|328908035|gb|EGG27794.1| cell cycle protein MesJ [Propionibacterium sp. P08]
          Length = 230

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 19/208 (9%)

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               ++  HT DDQ E V +   R      +         +   +     P L  RR   
Sbjct: 31  GDEPVLLGHTLDDQAEQVLLSLARGSGATSLA-------GIRPRSGQFWHPLLEIRRAQT 83

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYL----KMKKFQDLRVKVNNA 233
                +  +   +DP N D RF R RVR  +  +    L       + +   L    +  
Sbjct: 84  VQACREWEVEPWQDPHNGDPRFLRSRVRTELMPVMAEVLGPGVAESLARSAALLAGEDQV 143

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
           VA     +   H  S   +S  +  +++ L   +++                 ++ V+  
Sbjct: 144 VARAARVWADEHGVSSDELS-GLCGVEAGLARRVVKEWL-------PEARMVHVDSVLGL 195

Query: 294 LKSGKRGCVSIGRVVIDRRANFLWITRA 321
           L+      V +    ++ R   L++TR 
Sbjct: 196 LEGPGGAGVDVPGGRVEVRRGTLYLTRR 223


>gi|149913109|ref|ZP_01901643.1| ATPase of the PP superfamily protein [Roseobacter sp. AzwK-3b]
 gi|149813515|gb|EDM73341.1| ATPase of the PP superfamily protein [Roseobacter sp. AzwK-3b]
          Length = 289

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 15/175 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL  LH +   R    +   A ++D   +         + +  
Sbjct: 44  KGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 99

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            ++ + H +       V            A     R   +   A+    + ++  H  DD
Sbjct: 100 EKMGVPHRIEYQDTYSVVVDKVPQGRTYCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 159

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            LET +M         G   +     +  + ++++ RP       D   F     
Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLLNEEGDVFVYRPLSFVAEADCEKFANSMG 210


>gi|242398445|ref|YP_002993869.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
 gi|242264838|gb|ACS89520.1| ATPase, PP-loop superfamily [Thermococcus sibiricus MM 739]
          Length = 302

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 63/203 (31%), Gaps = 23/203 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   ++      + L     +LV +SGG DS      L  +             + ++  
Sbjct: 30  FEKKVKKTIDKYKLLKASEKVLVVISGGKDSAVTAYVLKKL-------GYDVECLHINLG 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISE 112
           +   ++    Y    C  + +   VV  +            R           RY + ++
Sbjct: 83  IGGYSEKSEEYAKKQCELMGVPLYVVRVRELLGAGIGEVRTRRPACSYCGLTKRY-IFNK 141

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFL 170
            A      +I T H  DD+  +    +  ++  + +        +L     ++   +P  
Sbjct: 142 FAYDNGFGVIATGHNLDDEA-SFIFSNLMNWNTEYLA---KQGPVLPGEGTFVKKIKPLY 197

Query: 171 RCRREDIRSFLLQRNISWCEDPS 193
                ++ ++ L   + +  +  
Sbjct: 198 GLTEREVVAYALAVGLEYIINEC 220


>gi|170702531|ref|ZP_02893409.1| PP-loop domain protein [Burkholderia ambifaria IOP40-10]
 gi|170132569|gb|EDT01019.1| PP-loop domain protein [Burkholderia ambifaria IOP40-10]
          Length = 332

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 25/244 (10%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 42  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 100

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 101 LD-QKQPG---FPEHVLPEYLTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 156

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD L+T+ +        KGM      D    D    + RP 
Sbjct: 157 LYRVAGELGATKIALGHHRDDILQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPL 212

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  F   R       P N        +R  ++  +RD D          F  L
Sbjct: 213 AYVKETDLEKFAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFSAL 270

Query: 227 RVKV 230
              V
Sbjct: 271 ANVV 274


>gi|160875323|ref|YP_001554639.1| C32 tRNA thiolase [Shewanella baltica OS195]
 gi|160860845|gb|ABX49379.1| PP-loop domain protein [Shewanella baltica OS195]
 gi|315267518|gb|ADT94371.1| PP-loop domain protein [Shewanella baltica OS678]
          Length = 322

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+  + +  A+++D   +        +V      +L + +
Sbjct: 56  LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLEKLNVPY 110

Query: 85  SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 111 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 170

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195
                    G  +  M   +L D     + RP   CR +D+  +   R       P N  
Sbjct: 171 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNLC 223

Query: 196 --DDRFERVRVRRFVRDIDLH 214
              +  +R  V+  +   D  
Sbjct: 224 GSQENLKRAAVKDMLNQWDRQ 244


>gi|324117461|gb|EGC11367.1| ydaO protein [Escherichia coli E1167]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|320659159|gb|EFX26751.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 307

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 24  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 79

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 80  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 137

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 138 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 193

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 194 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 251

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 252 DTNLFDFKGITHGSEVVNGGDLAFDREEI 280


>gi|320653570|gb|EFX21675.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 308

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 25  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 80

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 81  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 138

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 139 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 194

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 195 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 252

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 253 DTNLFDFKGITHGSEVVNGGDLAFDREEI 281


>gi|320189894|gb|EFW64546.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC1212]
 gi|320637248|gb|EFX07074.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O157:H7 str. G5101]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|307137986|ref|ZP_07497342.1| C32 tRNA thiolase [Escherichia coli H736]
 gi|331641911|ref|ZP_08343046.1| conserved hypothetical protein [Escherichia coli H736]
 gi|331038709|gb|EGI10929.1| conserved hypothetical protein [Escherichia coli H736]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|307309897|ref|ZP_07589547.1| PP-loop domain protein [Escherichia coli W]
 gi|306909615|gb|EFN40109.1| PP-loop domain protein [Escherichia coli W]
 gi|315060598|gb|ADT74925.1| predicted C32 tRNA thiolase [Escherichia coli W]
 gi|323378839|gb|ADX51107.1| PP-loop domain protein [Escherichia coli KO11]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|300822486|ref|ZP_07102625.1| PP-loop family protein [Escherichia coli MS 119-7]
 gi|331677133|ref|ZP_08377829.1| conserved hypothetical protein [Escherichia coli H591]
 gi|300524902|gb|EFK45971.1| PP-loop family protein [Escherichia coli MS 119-7]
 gi|331075822|gb|EGI47120.1| conserved hypothetical protein [Escherichia coli H591]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|291282439|ref|YP_003499257.1| C32 tRNA thiolase [Escherichia coli O55:H7 str. CB9615]
 gi|290762312|gb|ADD56273.1| C32 tRNA thiolase [Escherichia coli O55:H7 str. CB9615]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|260598076|ref|YP_003210647.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Cronobacter
           turicensis z3032]
 gi|260217253|emb|CBA31174.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Cronobacter
           turicensis z3032]
          Length = 310

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 91/281 (32%), Gaps = 22/281 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        ++  +  
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHILPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  AALGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F   +      
Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFSQAKGFPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F  ++  V + +             
Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTELFDFKGIHH 267

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
               ++   L  D   +  +    A        +     +E
Sbjct: 268 GSEVVNGGDLAFDREEIPMMPTGWAPEDEEAPPMQRLDVLE 308


>gi|256022942|ref|ZP_05436807.1| C32 tRNA thiolase [Escherichia sp. 4_1_40B]
 gi|300948430|ref|ZP_07162532.1| PP-loop family protein [Escherichia coli MS 116-1]
 gi|300954598|ref|ZP_07167043.1| PP-loop family protein [Escherichia coli MS 175-1]
 gi|301647155|ref|ZP_07246976.1| PP-loop family protein [Escherichia coli MS 146-1]
 gi|300318432|gb|EFJ68216.1| PP-loop family protein [Escherichia coli MS 175-1]
 gi|300452054|gb|EFK15674.1| PP-loop family protein [Escherichia coli MS 116-1]
 gi|301074641|gb|EFK89447.1| PP-loop family protein [Escherichia coli MS 146-1]
 gi|332343043|gb|AEE56377.1| C32 tRNA thiolase [Escherichia coli UMNK88]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|218694920|ref|YP_002402587.1| C32 tRNA thiolase [Escherichia coli 55989]
 gi|254789877|sp|B7L5B2|TTCA_ECO55 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|218351652|emb|CAU97367.1| putative C32 tRNA thiolase [Escherichia coli 55989]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|126737057|ref|ZP_01752792.1| hypothetical protein RSK20926_11519 [Roseobacter sp. SK209-2-6]
 gi|126721642|gb|EBA18345.1| hypothetical protein RSK20926_11519 [Roseobacter sp. SK209-2-6]
          Length = 295

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 76/214 (35%), Gaps = 16/214 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             LV +SGG DS  LL  LH +   R    ++  A ++D   +         + +   ++
Sbjct: 53  KWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFLEKM 108

Query: 81  RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + H +       +            A     R   +   A+    + ++  H  DD LE
Sbjct: 109 GVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDDILE 168

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192
           T +M         G   +     +  + +L++ RP      ED   F    N      D 
Sbjct: 169 TFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEEDCEKFAKAMNYPIIPCDL 224

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             + D  +R +V++ +   + ++   +   F+ L
Sbjct: 225 CGSQDGLQRQQVKQILDQWEKNSPGRRQIMFRAL 258


>gi|113866291|ref|YP_724780.1| ATPase [Ralstonia eutropha H16]
 gi|122947186|sp|Q0KF09|TTCA_RALEH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|113525067|emb|CAJ91412.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Ralstonia eutropha H16]
          Length = 314

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 95/277 (34%), Gaps = 24/277 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80
           +LV +SGG DS  +L  L ++   R+  K K  A+++D   +        ++  +    +
Sbjct: 34  VLVCMSGGKDSYTMLSVLMALQK-RAPIKFKLIAMNLD-QKQPG---FPEHILPEYLKSV 88

Query: 81  RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + + +V                   +     R  +I   AK + A  I   H  DD ++
Sbjct: 89  GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVQ 148

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDP 192
           T ++         G  +  M   +  D    I  RP   C  +DI S+           P
Sbjct: 149 TFFLNMF-----FGGKMKAMPPKLSTDDGQHIVIRPLAYCSEKDIASYARAMEFPII--P 201

Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            N     +  +R +V   ++D +          F  LR  V + +A       T     +
Sbjct: 202 CNLCGSQENLQRKKVSEMLQDWERQNPGRIDNIFSALRNVVPSHLADTDLFPFTGLATGL 261

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
             + +  L  ++T     L  +  +   ++    +  
Sbjct: 262 AKVDEASLFGETTFQQQPLMFAGNVEENRMEFVRFER 298


>gi|16129305|ref|NP_415860.1| tRNA 2-thiocytidine biosynthesis protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89108192|ref|AP_001972.1| predicted C32 tRNA thiolase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170081023|ref|YP_001730343.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238900579|ref|YP_002926375.1| putative C32 tRNA thiolase [Escherichia coli BW2952]
 gi|301022681|ref|ZP_07186534.1| PP-loop family protein [Escherichia coli MS 196-1]
 gi|2495598|sp|P76055|TTCA_ECOLI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830582|sp|B1XCH3|TTCA_ECODH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|259550623|sp|C4ZV92|TTCA_ECOBW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|1787606|gb|AAC74426.1| tRNA 2-thiocytidine biosynthesis protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85674916|dbj|BAE76407.1| predicted C32 tRNA thiolase [Escherichia coli str. K12 substr.
           W3110]
 gi|169888858|gb|ACB02565.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238862182|gb|ACR64180.1| predicted C32 tRNA thiolase [Escherichia coli BW2952]
 gi|260449521|gb|ACX39943.1| PP-loop domain protein [Escherichia coli DH1]
 gi|299881169|gb|EFI89380.1| PP-loop family protein [Escherichia coli MS 196-1]
 gi|315135985|dbj|BAJ43144.1| C32 tRNA thiolase [Escherichia coli DH1]
 gi|323937670|gb|EGB33938.1| ydaO protein [Escherichia coli E1520]
 gi|323942291|gb|EGB38462.1| ydaO protein [Escherichia coli E482]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|157159153|ref|YP_001462653.1| C32 tRNA thiolase [Escherichia coli E24377A]
 gi|157160856|ref|YP_001458174.1| C32 tRNA thiolase [Escherichia coli HS]
 gi|168749012|ref|ZP_02774034.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4113]
 gi|168756029|ref|ZP_02781036.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4401]
 gi|168769430|ref|ZP_02794437.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4486]
 gi|168775173|ref|ZP_02800180.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4196]
 gi|168782878|ref|ZP_02807885.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4076]
 gi|168788326|ref|ZP_02813333.1| PP-loop family protein [Escherichia coli O157:H7 str. EC869]
 gi|168799658|ref|ZP_02824665.1| PP-loop family protein [Escherichia coli O157:H7 str. EC508]
 gi|170020290|ref|YP_001725244.1| C32 tRNA thiolase [Escherichia coli ATCC 8739]
 gi|188491839|ref|ZP_02999109.1| PP-loop family protein [Escherichia coli 53638]
 gi|191165079|ref|ZP_03026923.1| PP-loop family protein [Escherichia coli B7A]
 gi|193066928|ref|ZP_03047897.1| PP-loop family protein [Escherichia coli E110019]
 gi|194426010|ref|ZP_03058566.1| PP-loop family protein [Escherichia coli B171]
 gi|195938013|ref|ZP_03083395.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC4024]
 gi|208810905|ref|ZP_03252738.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208815195|ref|ZP_03256374.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208820138|ref|ZP_03260458.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209398638|ref|YP_002270404.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4115]
 gi|218553904|ref|YP_002386817.1| C32 tRNA thiolase [Escherichia coli IAI1]
 gi|218704864|ref|YP_002412383.1| C32 tRNA thiolase [Escherichia coli UMN026]
 gi|254792939|ref|YP_003077776.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14359]
 gi|256018402|ref|ZP_05432267.1| C32 tRNA thiolase [Shigella sp. D9]
 gi|260843692|ref|YP_003221470.1| putative C32 tRNA thiolase [Escherichia coli O103:H2 str. 12009]
 gi|261224338|ref|ZP_05938619.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|293404873|ref|ZP_06648865.1| C32 tRNA thiolase [Escherichia coli FVEC1412]
 gi|298380517|ref|ZP_06990116.1| C32 tRNA thiolase [Escherichia coli FVEC1302]
 gi|300900109|ref|ZP_07118303.1| PP-loop family protein [Escherichia coli MS 198-1]
 gi|300927859|ref|ZP_07143421.1| PP-loop family protein [Escherichia coli MS 187-1]
 gi|300937577|ref|ZP_07152391.1| PP-loop family protein [Escherichia coli MS 21-1]
 gi|309797092|ref|ZP_07691490.1| PP-loop family protein [Escherichia coli MS 145-7]
 gi|312971542|ref|ZP_07785717.1| PP-loop family protein [Escherichia coli 1827-70]
 gi|331667743|ref|ZP_08368607.1| conserved hypothetical protein [Escherichia coli TA271]
 gi|331682839|ref|ZP_08383458.1| conserved hypothetical protein [Escherichia coli H299]
 gi|332279456|ref|ZP_08391869.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Shigella sp. D9]
 gi|205830581|sp|A7ZLH4|TTCA_ECO24 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830583|sp|A7ZZT7|TTCA_ECOHS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830585|sp|B1ISR7|TTCA_ECOLC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254789878|sp|B5Z0R4|TTCA_ECO5E RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790125|sp|B7LYL5|TTCA_ECO8A RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790126|sp|B7N4F3|TTCA_ECOLU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|121486021|gb|ABM54890.1| ATPase [Escherichia coli]
 gi|157066536|gb|ABV05791.1| PP-loop family protein [Escherichia coli HS]
 gi|157081183|gb|ABV20891.1| PP-loop family protein [Escherichia coli E24377A]
 gi|169755218|gb|ACA77917.1| PP-loop domain protein [Escherichia coli ATCC 8739]
 gi|187769348|gb|EDU33192.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4196]
 gi|188016561|gb|EDU54683.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4113]
 gi|188487038|gb|EDU62141.1| PP-loop family protein [Escherichia coli 53638]
 gi|188999726|gb|EDU68712.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4076]
 gi|189356826|gb|EDU75245.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4401]
 gi|189361597|gb|EDU80016.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4486]
 gi|189371828|gb|EDU90244.1| PP-loop family protein [Escherichia coli O157:H7 str. EC869]
 gi|189377987|gb|EDU96403.1| PP-loop family protein [Escherichia coli O157:H7 str. EC508]
 gi|190904851|gb|EDV64556.1| PP-loop family protein [Escherichia coli B7A]
 gi|192959518|gb|EDV89952.1| PP-loop family protein [Escherichia coli E110019]
 gi|194416065|gb|EDX32331.1| PP-loop family protein [Escherichia coli B171]
 gi|208724411|gb|EDZ74119.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208731843|gb|EDZ80531.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208740261|gb|EDZ87943.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160038|gb|ACI37471.1| PP-loop family protein [Escherichia coli O157:H7 str. EC4115]
 gi|218360672|emb|CAQ98233.1| putative C32 tRNA thiolase [Escherichia coli IAI1]
 gi|218431961|emb|CAR12846.1| putative C32 tRNA thiolase [Escherichia coli UMN026]
 gi|254592339|gb|ACT71700.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Escherichia coli
           O157:H7 str. TW14359]
 gi|257758839|dbj|BAI30336.1| predicted C32 tRNA thiolase [Escherichia coli O103:H2 str. 12009]
 gi|291427081|gb|EFF00108.1| C32 tRNA thiolase [Escherichia coli FVEC1412]
 gi|298277959|gb|EFI19473.1| C32 tRNA thiolase [Escherichia coli FVEC1302]
 gi|300356388|gb|EFJ72258.1| PP-loop family protein [Escherichia coli MS 198-1]
 gi|300457385|gb|EFK20878.1| PP-loop family protein [Escherichia coli MS 21-1]
 gi|300464144|gb|EFK27637.1| PP-loop family protein [Escherichia coli MS 187-1]
 gi|308119262|gb|EFO56524.1| PP-loop family protein [Escherichia coli MS 145-7]
 gi|310336139|gb|EFQ01339.1| PP-loop family protein [Escherichia coli 1827-70]
 gi|315619432|gb|EFU99976.1| PP-loop family protein [Escherichia coli 3431]
 gi|320199385|gb|EFW73976.1| C32 tRNA thiolase [Escherichia coli EC4100B]
 gi|323162443|gb|EFZ48295.1| PP-loop family protein [Escherichia coli E128010]
 gi|323185488|gb|EFZ70849.1| PP-loop family protein [Escherichia coli 1357]
 gi|323947686|gb|EGB43689.1| PP-loop family protein [Escherichia coli H120]
 gi|324021226|gb|EGB90445.1| PP-loop family protein [Escherichia coli MS 117-3]
 gi|326340987|gb|EGD64780.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. 1125]
 gi|331065328|gb|EGI37223.1| conserved hypothetical protein [Escherichia coli TA271]
 gi|331080470|gb|EGI51649.1| conserved hypothetical protein [Escherichia coli H299]
 gi|332101808|gb|EGJ05154.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Shigella sp. D9]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|193062617|ref|ZP_03043711.1| protein YdaO [Escherichia coli E22]
 gi|293433707|ref|ZP_06662135.1| C32 tRNA thiolase [Escherichia coli B088]
 gi|192931739|gb|EDV84339.1| protein YdaO [Escherichia coli E22]
 gi|284921219|emb|CBG34285.1| conserved hypothetical protein [Escherichia coli 042]
 gi|291324526|gb|EFE63948.1| C32 tRNA thiolase [Escherichia coli B088]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|126090134|ref|YP_001041615.1| hypothetical protein Sbal_4497 [Shewanella baltica OS155]
 gi|126174427|ref|YP_001050576.1| C32 tRNA thiolase [Shewanella baltica OS155]
 gi|205830626|sp|A3D4P4|TTCA_SHEB5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|125997632|gb|ABN61707.1| PP-loop domain protein [Shewanella baltica OS155]
 gi|125999790|gb|ABN63860.1| hypothetical protein Sbal_4497 [Shewanella baltica OS155]
          Length = 310

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+  + +  A+++D   +        +V      +L + +
Sbjct: 44  LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLEKLNVPY 98

Query: 85  SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 99  HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 158

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195
                    G  +  M   +L D     + RP   CR +D+  +   +       P N  
Sbjct: 159 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLKEFPII--PCNLC 211

Query: 196 --DDRFERVRVRRFVRDIDLH 214
              +  +R  V+  +   D  
Sbjct: 212 GSQENLKRAAVKDMLNQWDRQ 232


>gi|15801821|ref|NP_287839.1| C32 tRNA thiolase [Escherichia coli O157:H7 EDL933]
 gi|15831182|ref|NP_309955.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. Sakai]
 gi|74312284|ref|YP_310703.1| C32 tRNA thiolase [Shigella sonnei Ss046]
 gi|168762635|ref|ZP_02787642.1| protein YdaO [Escherichia coli O157:H7 str. EC4501]
 gi|194437000|ref|ZP_03069099.1| protein YdaO [Escherichia coli 101-1]
 gi|209918589|ref|YP_002292673.1| C32 tRNA thiolase [Escherichia coli SE11]
 gi|217329161|ref|ZP_03445241.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14588]
 gi|253773654|ref|YP_003036485.1| C32 tRNA thiolase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161423|ref|YP_003044531.1| C32 tRNA thiolase [Escherichia coli B str. REL606]
 gi|260855043|ref|YP_003228934.1| putative C32 tRNA thiolase [Escherichia coli O26:H11 str. 11368]
 gi|260867792|ref|YP_003234194.1| putative C32 tRNA thiolase [Escherichia coli O111:H- str. 11128]
 gi|293414670|ref|ZP_06657319.1| C32 tRNA thiolase [Escherichia coli B185]
 gi|331662754|ref|ZP_08363677.1| conserved hypothetical protein [Escherichia coli TA143]
 gi|331672873|ref|ZP_08373659.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|81765103|sp|Q8X8Q5|TTCA_ECO57 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123617055|sp|Q3Z194|TTCA_SHISS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790127|sp|B6IA61|TTCA_ECOSE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|12515408|gb|AAG56453.1|AE005371_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361393|dbj|BAB35351.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|73855761|gb|AAZ88468.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|189367043|gb|EDU85459.1| protein YdaO [Escherichia coli O157:H7 str. EC4501]
 gi|194423983|gb|EDX39971.1| protein YdaO [Escherichia coli 101-1]
 gi|209911848|dbj|BAG76922.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|217317600|gb|EEC26028.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. TW14588]
 gi|242377120|emb|CAQ31848.1| predicted C32 tRNA thiolase [Escherichia coli BL21(DE3)]
 gi|253324698|gb|ACT29300.1| PP-loop domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973324|gb|ACT38995.1| predicted C32 tRNA thiolase [Escherichia coli B str. REL606]
 gi|253977537|gb|ACT43207.1| predicted C32 tRNA thiolase [Escherichia coli BL21(DE3)]
 gi|257753692|dbj|BAI25194.1| predicted C32 tRNA thiolase [Escherichia coli O26:H11 str. 11368]
 gi|257764148|dbj|BAI35643.1| predicted C32 tRNA thiolase [Escherichia coli O111:H- str. 11128]
 gi|291434728|gb|EFF07701.1| C32 tRNA thiolase [Escherichia coli B185]
 gi|320180213|gb|EFW55148.1| C32 tRNA thiolase [Shigella boydii ATCC 9905]
 gi|320642614|gb|EFX11862.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O157:H- str. 493-89]
 gi|320647967|gb|EFX16675.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O157:H- str. H 2687]
 gi|323153564|gb|EFZ39815.1| PP-loop family protein [Escherichia coli EPECa14]
 gi|323168226|gb|EFZ53912.1| PP-loop family protein [Shigella sonnei 53G]
 gi|323179692|gb|EFZ65253.1| PP-loop family protein [Escherichia coli 1180]
 gi|323962411|gb|EGB57994.1| ydaO protein [Escherichia coli H489]
 gi|323973546|gb|EGB68731.1| ydaO protein [Escherichia coli TA007]
 gi|326343225|gb|EGD66992.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. 1044]
 gi|331061176|gb|EGI33140.1| conserved hypothetical protein [Escherichia coli TA143]
 gi|331070094|gb|EGI41463.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|332091755|gb|EGI96835.1| PP-loop family protein [Shigella boydii 5216-82]
          Length = 311

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|226945379|ref|YP_002800452.1| C32 tRNA thiolase [Azotobacter vinelandii DJ]
 gi|259550618|sp|C1DPQ6|TTCA_AZOVD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|226720306|gb|ACO79477.1| PP-loop ATPase protein [Azotobacter vinelandii DJ]
          Length = 274

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 91/240 (37%), Gaps = 21/240 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+V  F   +     ++V +SGG DS  +L  L  +      G  +  A+++D   +   
Sbjct: 21  EAVTDF-NMIEEGDKVMVCLSGGKDSYTMLDVLLYLQKVAPIG-FEIVAVNMD-QKQPGF 77

Query: 67  KDEV--RYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            +EV   Y+  +     I     +SVV  K  + +T   +     R   +   A  I AT
Sbjct: 78  PEEVLPTYLKSIGVDYHIIEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADRIGAT 136

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRS 179
            +   H  DD LET ++         G  L  M   +L D     + RP   C   DI +
Sbjct: 137 KMALGHHRDDILETFFLNLF-----YGGTLKAMPPKLLSDDGRNVVIRPLAYCSETDIEA 191

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +   +       P N     +  +R  V+  +R+ +  +       F+ L+    + +A 
Sbjct: 192 YAKLKEFPII--PCNLCGSQENLQRQVVKEMLREWERQSPGRTEIMFRALQNVHPSQLAD 249


>gi|18976645|ref|NP_578002.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18892216|gb|AAL80397.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 283

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 81/258 (31%), Gaps = 58/258 (22%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             IE  +   +       ILVAVSGG DS      L  +         K   + ++  + 
Sbjct: 18  RTIEKYKLASKD----ERILVAVSGGKDSAVTAYVLKKL-------GYKIECLHLNLGIG 66

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISE 112
           E ++    Y    C  +    +++  K            S+P           RY ++++
Sbjct: 67  EYSEKSEIYAKKQCEFIGAPLNIIRVKELLGYGIGEVRTSRPTCSYCGL--TKRY-IMNK 123

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFL 170
            A       + T H  DD+  +  M +   +  + +   G    +L     ++   +P  
Sbjct: 124 FAYDNGFDAVATGHNLDDEA-SFLMNNLLHWNTEYLAKGG---PLLPGEGKFVKKIKPLY 179

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER-----------------------VRVRRF 207
                ++ ++ +   + +  +       + R                         VR F
Sbjct: 180 ELTEREVVAYAIAVGLEYIVEECP----YARGATTLDMKEVLNELEEKRPGTKFNFVRGF 235

Query: 208 VRDIDLHALYLKMKKFQD 225
           +R   L    +K K  ++
Sbjct: 236 LRKKKLFEPEVKGKDLKE 253


>gi|218548977|ref|YP_002382768.1| C32 tRNA thiolase [Escherichia fergusonii ATCC 35469]
 gi|254790129|sp|B7LRU9|TTCA_ESCF3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|218356518|emb|CAQ89141.1| putative C32 tRNA thiolase [Escherichia fergusonii ATCC 35469]
          Length = 311

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        ++  +  
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG---FPEHILPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  EKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI+ F   +      
Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRFADAKAFPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F  ++  V + +             
Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGIKH 267

Query: 248 SIIAISQDILNIDSTLL 264
               I+   L  D   L
Sbjct: 268 GFEVINGGDLAFDREEL 284


>gi|320664063|gb|EFX31250.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 303

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 20  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 75

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 76  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 133

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 134 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 189

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 190 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 247

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 248 DTNLFDFKGITHGSEVVNGGDLAFDREEI 276


>gi|192359196|ref|YP_001982540.1| hypothetical protein CJA_2075 [Cellvibrio japonicus Ueda107]
 gi|254789871|sp|B3PID5|TTCA_CELJU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|190685361|gb|ACE83039.1| conserved hypothetical protein [Cellvibrio japonicus Ueda107]
          Length = 302

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 21/211 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L S+       + +  A+++D   +        +V  +  
Sbjct: 37  GDKVMVCLSGGKDSYTMLDILLSLQQTAPI-RFELVAVNMD-QKQPG---FPEHVLPNYL 91

Query: 78  SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++L +   ++                         R   +   A  I AT I   H  DD
Sbjct: 92  AQLGVPFHIIERDTYSIVKEVVPEGKTTCGLCSRLRRGTLYGFADEIGATKIALGHHRDD 151

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+++        K M    + D    D    + RP   C  EDI  F   +      
Sbjct: 152 IIETLFLNMFYGGKLKAMPPKLLSD----DKRNIVIRPLAYCAEEDIAEFARLKGFPII- 206

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
            P N     +    R+ V+++ LHA   +  
Sbjct: 207 -PCNLCGS-QENLQRQAVKEM-LHAWERQFP 234


>gi|331002999|ref|ZP_08326511.1| hypothetical protein HMPREF0491_01373 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413043|gb|EGG92418.1| hypothetical protein HMPREF0491_01373 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 382

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 29/234 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76
              I V +SGG DSM +      +L        +   + ++        D++ Y  + D 
Sbjct: 143 GDKIAVCISGGKDSMLMAKLFQELLK-HGKRNFELVFLVMN----PG-YDDINYRTIVDN 196

Query: 77  CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              L +   V         ++ +          R   +   AK +    I   H FDD +
Sbjct: 197 AKLLDVPIVVFESSIYDIVAEDEKSPCYLCARMRRGHLYAKAKELGCNKIALGHHFDDVI 256

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ET+ M         G  +  M   +       + + RP    R EDI  +     +++  
Sbjct: 257 ETIVMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREEDIIHWAKYNQLNFIR 311

Query: 191 DPS----NTDDRFE------RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
                  N            R  V++ +R++     Y++   F+ +     + V
Sbjct: 312 CACRLTDNCSISETGDKGSMRAEVKKLIRELAAKNPYIEKNIFRSVENVSLDTV 365


>gi|167032255|ref|YP_001667486.1| C32 tRNA thiolase [Pseudomonas putida GB-1]
 gi|205830615|sp|B0KT32|TTCA_PSEPG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|166858743|gb|ABY97150.1| PP-loop domain protein [Pseudomonas putida GB-1]
          Length = 274

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 79/240 (32%), Gaps = 22/240 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  +L  L  +        IKF  ++V+    +        +V    
Sbjct: 32  GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFEIVAVNMDQKQPG---FPEHVLPAY 85

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L + + +V                   +     R   +   A  I AT +   H  D
Sbjct: 86  LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET ++    + A KGM           D    + RP   C  +DI+++   +     
Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKEFPII 201

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+D+ +        + + +   + N     +         S+
Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258


>gi|47217570|emb|CAG02497.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 300

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 12/171 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  L   +  +L++R    +    +SVD  +     D +  V     +  
Sbjct: 53  VGIAASGGKDSTVLAHVMK-LLNERYNYGLTLMLLSVDEGITGYRDDSLETVKRNQQQYE 111

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   +VS++                          R   +   A  +    I T H  DD
Sbjct: 112 LPLKIVSYEELYGWTMDAIVRQVGLKNNCTFCGVFRRQALDRGAIMLKVDKICTGHNADD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
             ETV M   R    +   +           +   +        ++I  + 
Sbjct: 172 VAETVLMNVLRGDIARLRAVPPSPQPARATGSSRAASRLKYAYEKEIVLYA 222


>gi|302670988|ref|YP_003830948.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
 gi|302395461|gb|ADL34366.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
          Length = 287

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 11/175 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DSM L      +      GK  F  I +       +    + +     
Sbjct: 41  GDKIAVCISGGKDSMLLAKLFQELA---RHGKHNFEVIFLA-MNPGYSDANYQNILRNAE 96

Query: 79  RLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            + I  ++         +K            R   +   A+ +    I   H FDD +ET
Sbjct: 97  LMNIPLTIFESDIFDVTTKVGGSPCYLCARMRRGALYSKAQELGCNKIALGHHFDDVIET 156

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           ++M        + M +  +  T      + + RP    R EDI  ++    + + 
Sbjct: 157 IFMAMMYGGQIQTM-MPKLHSTNF--KGMELIRPLYLVREEDIVHWMNYNELKFI 208


>gi|104780539|ref|YP_607037.1| C32 tRNA thiolase [Pseudomonas entomophila L48]
 gi|205830612|sp|Q1IDN2|TTCA_PSEE4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|95109526|emb|CAK14227.1| putative PP-loop ATPase [Pseudomonas entomophila L48]
          Length = 274

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 79/240 (32%), Gaps = 22/240 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  +L  L  +        IKF  ++V+    +        +V    
Sbjct: 32  GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFDIVAVNMDQKQPG---FPEHVLPAY 85

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L + + +V                   +     R   +   A  I AT +   H  D
Sbjct: 86  LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET ++    + A KGM           D    + RP   C  +DI+++   +     
Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKEFPII 201

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+D+ +        + + +   + N     +         S+
Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258


>gi|301326916|ref|ZP_07220210.1| PP-loop family protein [Escherichia coli MS 78-1]
 gi|300846468|gb|EFK74228.1| PP-loop family protein [Escherichia coli MS 78-1]
          Length = 311

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT 195
            F   +       P N 
Sbjct: 198 RFADAKAFPII--PCNL 212


>gi|300819436|ref|ZP_07099632.1| PP-loop family protein [Escherichia coli MS 107-1]
 gi|300527935|gb|EFK48997.1| PP-loop family protein [Escherichia coli MS 107-1]
          Length = 243

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT 195
            F   +       P N 
Sbjct: 198 RFADAKAFPII--PCNL 212


>gi|300926735|ref|ZP_07142510.1| PP-loop family protein [Escherichia coli MS 182-1]
 gi|300417311|gb|EFK00622.1| PP-loop family protein [Escherichia coli MS 182-1]
          Length = 311

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT 195
            F   +       P N 
Sbjct: 198 RFADAKAFPII--PCNL 212


>gi|215486638|ref|YP_002329069.1| C32 tRNA thiolase [Escherichia coli O127:H6 str. E2348/69]
 gi|312966725|ref|ZP_07780943.1| PP-loop family protein [Escherichia coli 2362-75]
 gi|254789875|sp|B7URE9|TTCA_ECO27 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|215264710|emb|CAS09084.1| predicted C32 tRNA thiolase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288189|gb|EFR16091.1| PP-loop family protein [Escherichia coli 2362-75]
          Length = 311

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT 195
            F   +       P N 
Sbjct: 198 RFADAKAFPII--PCNL 212


>gi|205830651|sp|A9L1D4|TTCA_SHEB9 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 310

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 21/179 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+  + +  A+++D   +        +V      +L + +
Sbjct: 44  LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLEKLNVPY 98

Query: 85  SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 99  HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 158

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                    G  +  M   +L D     + RP   CR +D+  +   R       P N 
Sbjct: 159 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNL 210


>gi|82776711|ref|YP_403060.1| C32 tRNA thiolase [Shigella dysenteriae Sd197]
 gi|309788962|ref|ZP_07683557.1| PP-loop family protein [Shigella dysenteriae 1617]
 gi|123562717|sp|Q32GI6|TTCA_SHIDS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|81240859|gb|ABB61569.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308923233|gb|EFP68745.1| PP-loop family protein [Shigella dysenteriae 1617]
          Length = 311

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 20/197 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLLEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT 195
            F   +       P N 
Sbjct: 198 RFADAKAFPII--PCNL 212


>gi|83745936|ref|ZP_00942992.1| tRNA s2C32 biosynthesis protein TtcA [Ralstonia solanacearum UW551]
 gi|207727654|ref|YP_002256048.1| cog0037, predicted atpase of the pp-loop superfamily protein
           [Ralstonia solanacearum MolK2]
 gi|207742047|ref|YP_002258439.1| cog0037, predicted atpase of the pp-loop superfamily protein
           [Ralstonia solanacearum IPO1609]
 gi|83727330|gb|EAP74452.1| tRNA s2C32 biosynthesis protein TtcA [Ralstonia solanacearum UW551]
 gi|206590893|emb|CAQ56505.1| cog0037, predicted atpase of the pp-loop superfamily protein
           [Ralstonia solanacearum MolK2]
 gi|206593433|emb|CAQ60360.1| cog0037, predicted atpase of the pp-loop superfamily protein
           [Ralstonia solanacearum IPO1609]
          Length = 312

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 88/247 (35%), Gaps = 22/247 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG DS  +L  L ++   R+    K  A+++D   +    ++V    +   ++ 
Sbjct: 34  VLVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEDVLP--NYLKKVG 89

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +V                   +     R  +I   AK + A  I   H  DD + T
Sbjct: 90  VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++         G  +  M   +  D    I  RP   C  ++I ++           P 
Sbjct: 150 FFLNMF-----FGGKMKAMPPKLATDNGDHIVIRPLAYCAEKEIAAYARAMEFPII--PC 202

Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N     +  +R +V+  + + +  A       F  L+  V + +A       +     + 
Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQAPGRIDNIFAALQNVVPSHLADTGLFDFSGLATGLA 262

Query: 251 AISQDIL 257
            I ++ L
Sbjct: 263 RIGEEAL 269


>gi|114330769|ref|YP_746991.1| PP-loop domain-containing protein [Nitrosomonas eutropha C91]
 gi|122314289|sp|Q0AI06|TTCA_NITEC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|114307783|gb|ABI59026.1| tRNA s(2)C-32 sulfurtransferase [Nitrosomonas eutropha C91]
          Length = 313

 Score = 88.8 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 84/259 (32%), Gaps = 24/259 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               I+V +SGG DS  LL  L ++ +       +  A+++D   +        +V    
Sbjct: 37  SGDRIMVCLSGGKDSYALLDILRNLQAHAPL-DFELIAVNLD-QKQPG---FPEHVLPGY 91

Query: 77  CSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            S + +   +V         +         +     R  ++   A  + AT I   H  D
Sbjct: 92  LSEINMPFRIVEQDTYSVVKRVIPEGKTTCSLCSRLRRGVLYRVATELGATKIALGHHRD 151

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D LET ++         G  L  M   ++ D     + RP   C+ +D+ ++        
Sbjct: 152 DILETFFLNMF-----YGGKLKAMPPKLVSDDGCHVVIRPLAYCKEKDLAAYAQLVQFPI 206

Query: 189 CEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVH 245
              P N        +R  ++  ++  +          F  L+    + +A          
Sbjct: 207 I--PCNLCGSQPNLQRQVIKEMMQQWNKKYPGRLETMFTALQNIQLSHLADTSRYDFVGI 264

Query: 246 MRSIIAISQDILNIDSTLL 264
               IA  +     D  LL
Sbjct: 265 KPHGIATEEGDKAFDEELL 283


>gi|167947098|ref|ZP_02534172.1| PP-loop [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 148

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 4/111 (3%)

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+ ++  R     G+        +       + RP L   R  + ++  Q+ + W EDP
Sbjct: 5   ETLLLQLLRGSGPAGLAAMPRIAPL---GQGRLVRPLLDFPRSALEAYAHQQGLQWLEDP 61

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           SN   +F+R  +R  V  + L A +            +      LI + + 
Sbjct: 62  SNAQLQFDRNYLRHRVVPM-LKARWPAADATLSRSASLCGDAQQLIDELVA 111


>gi|330941398|gb|EGH44224.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330980171|gb|EGH78353.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 274

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+++        ++ ++        ++   
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID T     + V
Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271


>gi|170720389|ref|YP_001748077.1| C32 tRNA thiolase [Pseudomonas putida W619]
 gi|205830616|sp|B1J1K3|TTCA_PSEPW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|169758392|gb|ACA71708.1| PP-loop domain protein [Pseudomonas putida W619]
          Length = 274

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 79/240 (32%), Gaps = 22/240 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  +L  L  +        IKF  ++V+    +        +V    
Sbjct: 32  GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFEIVAVNMDQKQPG---FPEHVLPAY 85

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L + + +V                   +     R   +   A  I AT +   H  D
Sbjct: 86  LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET ++    + + KGM           D    + RP   C  +DI+++   +     
Sbjct: 146 DIVETFFLNMFFNGSLKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKEFPII 201

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+D+ +        + + +   + N     +         S+
Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258


>gi|257091915|ref|YP_003165556.1| PP-loop domain-containing protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044439|gb|ACV33627.1| PP-loop domain protein [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 294

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 20/225 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79
           +LV VSGG DS  LL  L ++  +R+    +  A+++D   +     EV   Y++ +   
Sbjct: 34  VLVCVSGGKDSHTLLSLLIAL-RERAPVNFRVIAMNLD-QKQPGFPAEVLPDYLAKIGVD 91

Query: 80  LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            RI     ++VV  K  + +T   +     R  +I   AK + A  I   H  DD + T+
Sbjct: 92  YRIVEQDTYAVVKDKIPEGKT-TCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVHTL 150

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           ++         G  L  M   +  D     + RP   CR  DI  F           P N
Sbjct: 151 FLNLF-----FGGQLKAMPPKLRTDDGCHVVIRPLAYCRESDIARFARGMEYPII--PCN 203

Query: 195 T---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
                D  +R ++R  + D D          F  L+  V + +A 
Sbjct: 204 LCGSQDNLQRQKIREMMADWDQRYPGRTDVVFSALQKVVPSHLAD 248


>gi|237731651|ref|ZP_04562132.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter sp.
           30_2]
 gi|226907190|gb|EEH93108.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter sp.
           30_2]
          Length = 311

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 89/266 (33%), Gaps = 40/266 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              I+V +SGG DS  +L  L ++        I FS ++V+          H L E    
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQS---APISFSLVAVNLDQKQPGFPGHILPE---- 91

Query: 69  EVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATL 121
                     +L + + +V        K+  P+     +     R  ++   A  + AT 
Sbjct: 92  -------YLEQLGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATK 144

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI  F 
Sbjct: 145 IALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFS 200

Query: 182 LQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
             +       P N        +R  +   +RD D          F  ++  V + ++ + 
Sbjct: 201 EAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLSDIN 258

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLL 264
                        +    L  D   +
Sbjct: 259 LFDFKGIKHGSEVVDGGDLAFDREEI 284


>gi|149911837|ref|ZP_01900439.1| hypothetical protein PE36_11367 [Moritella sp. PE36]
 gi|149805090|gb|EDM65114.1| hypothetical protein PE36_11367 [Moritella sp. PE36]
          Length = 309

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 18/228 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76
              ++V +SGG+DS  +L  L  + +          A+++D   +    +++  RY+ ++
Sbjct: 38  GDRVMVCLSGGADSYTMLDILLQLKAAAPIS-FDIIAVNLD-QKQPGFPEDILPRYLENL 95

Query: 77  CSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               +I     +S+V  K  + +T   +     R  ++   A  + AT +   H  DD +
Sbjct: 96  GIEYKIVQKDTYSIVKDKIPEGKT-TCSLCSRLRRGILYNAAVELRATKLALGHHADDIV 154

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+++        K    +     I  D    + RP   CR  DI+++   +       P
Sbjct: 155 ETLFLNMFHGAKMK----TMPPKLISDDKRNIVIRPLAYCREADIKAYSAFKAFPII--P 208

Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            N     +  +R  V++ +   D          F  +R  V + +A L
Sbjct: 209 CNLCGSQENLQRQAVKKMLAQWDETNPGRVNNCFNSIRNIVPSHLADL 256


>gi|113970353|ref|YP_734146.1| C32 tRNA thiolase [Shewanella sp. MR-4]
 gi|114047455|ref|YP_738005.1| C32 tRNA thiolase [Shewanella sp. MR-7]
 gi|117920561|ref|YP_869753.1| C32 tRNA thiolase [Shewanella sp. ANA-3]
 gi|113885037|gb|ABI39089.1| PP-loop domain protein [Shewanella sp. MR-4]
 gi|113888897|gb|ABI42948.1| PP-loop domain protein [Shewanella sp. MR-7]
 gi|117612893|gb|ABK48347.1| PP-loop domain protein [Shewanella sp. ANA-3]
          Length = 322

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 22/195 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+  + +  A+++D   +        +V       L I +
Sbjct: 56  LSGGKDSYAMLDILLNLQ-QRAPVQFEIIAVNLD-QKQPG---FPEHVLPAYLDSLNIPY 110

Query: 85  SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++                   +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 111 HILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETMFL 170

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
                    G  +  M   +L D     + RP   CR +D+  +   +       P N  
Sbjct: 171 NMF-----YGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYAELKKFPII--PCNLC 223

Query: 197 DRFERVRVRRFVRDI 211
              +    R+ V+D+
Sbjct: 224 GS-QENLKRQAVKDM 237


>gi|172061930|ref|YP_001809582.1| C32 tRNA thiolase [Burkholderia ambifaria MC40-6]
 gi|205830561|sp|B1YP61|TTCA_BURA4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|171994447|gb|ACB65366.1| PP-loop domain protein [Burkholderia ambifaria MC40-6]
          Length = 340

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 88/276 (31%), Gaps = 25/276 (9%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           +F   +  V   +     +     ++V +SGG DS  +L  L  +  +R+       A++
Sbjct: 45  LFKRIVRQVGQAIGDYNMIEQGDKVMVCLSGGKDSYAMLDVLLRL-RERAPIDFDIVAVN 103

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +        +V  +  +++ +   +       +  +         +     R  +
Sbjct: 104 LD-QKQPG---FPEHVLPEYLTQIGVPFHIENQDTYSIVKRLVPEGKTTCSLCSRLRRGI 159

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + AT I   H  DD L+T+ +        KGM      D    D    + RP 
Sbjct: 160 LYRVAGELGATKIALGHHRDDILQTLLLNMFYGGKLKGMPPKLQSD----DGKNVVIRPL 215

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              +  D+  F   R       P N        +R  ++  +RD D          F  L
Sbjct: 216 AYVKETDLEKFAELREFPII--PCNLCGSQPNLKRAEMKALIRDWDKRFPGRVDNMFSAL 273

Query: 227 RVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDST 262
              V + +             +  A  Q  +  D  
Sbjct: 274 ANVVPSHLMDTTQFPFASLRATGQADPQGDIAFDEE 309


>gi|317122881|ref|YP_004102884.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592861|gb|ADU52157.1| phosphoadenosine phosphosulfate reductase [Thermaerobacter
           marianensis DSM 12885]
          Length = 304

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 24/189 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R   +   ILVAVSGG DS+ +   L  +         +   + +D  + E +K     V
Sbjct: 42  RMFTHDDRILVAVSGGKDSLAIWDVLLRL-------GYEAHGLYIDLGIGEYSKRSTEKV 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------------RYALISEHAKTINATL 121
                       VVS +  +   G    AR+A            RY L +  A      +
Sbjct: 95  RRFAEERGAVLRVVSVE-EEYGLGTTELARKAGRPACSACGLNKRY-LFNREALAGGYDV 152

Query: 122 IMTAHTFDDQLETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           I+T H  DD+  T+       +          +  +      +   +P  R    +I S+
Sbjct: 153 IVTGHNLDDEAATLLGNVLHWNTGYLARQAPVLEASAP--NLVKKVKPLYRLTEREIASY 210

Query: 181 LLQRNISWC 189
            + R I + 
Sbjct: 211 AVLRGIDYI 219


>gi|289677052|ref|ZP_06497942.1| hypothetical protein PsyrpsF_27458 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 274

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+++        ++ ++        ++   
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERNTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID T     + V
Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271


>gi|300705432|ref|YP_003747035.1| ATP pyrophosphatase [Ralstonia solanacearum CFBP2957]
 gi|299073096|emb|CBJ44453.1| putative ATP pyrophosphatase [Ralstonia solanacearum CFBP2957]
          Length = 312

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 88/247 (35%), Gaps = 22/247 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG DS  +L  L ++   R+    K  A+++D   +    ++V    +   ++ 
Sbjct: 34  VLVCLSGGKDSYTMLSVLMALQK-RAPVDFKLIAMNLD-QKQPGFPEDVLP--NYLKKVG 89

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +V                   +     R  +I   AK + A  I   H  DD + T
Sbjct: 90  VEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVNT 149

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPS 193
            ++         G  +  M   +  D    I  RP   C  ++I S+           P 
Sbjct: 150 FFLNMF-----FGGKMKAMPPKLATDNGDHIVIRPLAYCAEKEIASYARAMEFPII--PC 202

Query: 194 NT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
           N     +  +R +V+  + + +  A       F  L+  V + +A       +     + 
Sbjct: 203 NLCGSQENLQRKKVKEMLLEWERQAPGRIDNIFAALQNVVPSHLADTGLFDFSGLATGLA 262

Query: 251 AISQDIL 257
            I ++ L
Sbjct: 263 RIGEEAL 269


>gi|169794994|ref|YP_001712787.1| hypothetical protein ABAYE0832 [Acinetobacter baumannii AYE]
 gi|184159220|ref|YP_001847559.1| C32 tRNA thiolase [Acinetobacter baumannii ACICU]
 gi|213158341|ref|YP_002320392.1| PP-loop domain protein [Acinetobacter baumannii AB0057]
 gi|215482544|ref|YP_002324734.1| PP-loop family protein [Acinetobacter baumannii AB307-0294]
 gi|239503410|ref|ZP_04662720.1| PP-loop family protein [Acinetobacter baumannii AB900]
 gi|301346028|ref|ZP_07226769.1| PP-loop family protein [Acinetobacter baumannii AB056]
 gi|301511850|ref|ZP_07237087.1| PP-loop family protein [Acinetobacter baumannii AB058]
 gi|301594317|ref|ZP_07239325.1| PP-loop family protein [Acinetobacter baumannii AB059]
 gi|332855914|ref|ZP_08436088.1| PP-loop family protein [Acinetobacter baumannii 6013150]
 gi|332867124|ref|ZP_08437403.1| PP-loop family protein [Acinetobacter baumannii 6013113]
 gi|332876184|ref|ZP_08443963.1| PP-loop family protein [Acinetobacter baumannii 6014059]
 gi|205830360|sp|B2HXA8|TTCA_ACIBC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830364|sp|B0VDQ2|TTCA_ACIBY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254789862|sp|B7GY44|TTCA_ACIB3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254789863|sp|B7I610|TTCA_ACIB5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|169147921|emb|CAM85784.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|183210814|gb|ACC58212.1| predicted ATPase of the PP-loop superfamily [Acinetobacter
           baumannii ACICU]
 gi|213057501|gb|ACJ42403.1| PP-loop domain protein [Acinetobacter baumannii AB0057]
 gi|213986850|gb|ACJ57149.1| PP-loop family protein [Acinetobacter baumannii AB307-0294]
 gi|322509134|gb|ADX04588.1| ATPase [Acinetobacter baumannii 1656-2]
 gi|323519162|gb|ADX93543.1| C32 tRNA thiolase [Acinetobacter baumannii TCDC-AB0715]
 gi|332727233|gb|EGJ58682.1| PP-loop family protein [Acinetobacter baumannii 6013150]
 gi|332734197|gb|EGJ65327.1| PP-loop family protein [Acinetobacter baumannii 6013113]
 gi|332735618|gb|EGJ66666.1| PP-loop family protein [Acinetobacter baumannii 6014059]
          Length = 301

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 83/263 (31%), Gaps = 25/263 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F   +     ++V VSGG DS  LL  L      +    I F  ++V+    +   
Sbjct: 37  AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + ++                   A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYMEENNIPYYILEKDTYSITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD + T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA- 235
           +   R       P N     +  +R  +   +R+ D          F  L+    + +A 
Sbjct: 207 YAELRKFPII--PCNLCGSQENLQRAMINEMLREWDKQYPKRLHSIFGALQNVSPSQLAD 264

Query: 236 -MLIPKYLTVHMRSIIAISQDIL 257
             L    +    R +     + L
Sbjct: 265 RDLFDFEVLDSQRELDFKDPEEL 287


>gi|116622294|ref|YP_824450.1| PP-loop domain-containing protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225456|gb|ABJ84165.1| PP-loop domain protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 260

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 20/228 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRE 64
           E++  F + +     + VA+SGG DS  +L AL  +L  R+       + +V+    LR 
Sbjct: 13  EAIHRF-KMIRDGDRVAVALSGGKDSATMLEALL-LLQKRAPIDFSVVSFTVEQGKFLRP 70

Query: 65  TAKDEVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                +  V +   +  I  +       +     +P  G        R   + E A+ + 
Sbjct: 71  -----IEPVGEYLKQRGIPWTYFRDDPSMRLLEEQPDHG-CDLCSRYRRRAVYEIARDLG 124

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
             +I   HT DD  E       R+    G   S    T   + +  + RP      +   
Sbjct: 125 VNVIAFGHTADDFCE----ALLRNTMFTGKLSSLPPVTWSRNRDYRLIRPLCFVTEDITT 180

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           ++     I       +      R  +R     ++    +LK      +
Sbjct: 181 AYAASMGIPVIPCGCSQRTGTVRRALRDLFAGLEQEHPHLKENMLSAM 228


>gi|89899625|ref|YP_522096.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rhodoferax
           ferrireducens T118]
 gi|122479910|sp|Q220I8|TTCA_RHOFD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|89344362|gb|ABD68565.1| PP-loop [Rhodoferax ferrireducens T118]
          Length = 338

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 17/179 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V VSGG DS GLL  L  +   R+    +  A+++D   ++        + +  +
Sbjct: 78  GDRVMVCVSGGKDSYGLLDILLKMQ-QRAPINFEIVAVNLD---QKQPGFPAHILPEYLA 133

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L I   +       +  K       + +     R  ++   A  +  T I   H  DD 
Sbjct: 134 KLGIEFHIETQDTYSIVKKVIPEGKTMCSLCSRLRRGILYRVADELKITKIALGHHRDDM 193

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
           L+T ++         G  L GM   ++ D    I  RP      +D+  +   R     
Sbjct: 194 LQTFFLNMF-----FGGKLKGMPPKLVSDDGGHIVIRPLANVAEKDLTRWAAHRQFPII 247


>gi|309701645|emb|CBJ00952.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
          Length = 277

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 87/257 (33%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        +V  +  
Sbjct: 5   GDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG---FPEHVLPEYL 59

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 60  EKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI+ F   +      
Sbjct: 120 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRFADAKAFPII- 174

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F  ++  V + +             
Sbjct: 175 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITH 233

Query: 248 SIIAISQDILNIDSTLL 264
               ++   L  D   +
Sbjct: 234 GSEVVNGGDLAFDREEI 250


>gi|299769035|ref|YP_003731061.1| PP-loop family protein [Acinetobacter sp. DR1]
 gi|298699123|gb|ADI89688.1| PP-loop family protein [Acinetobacter sp. DR1]
          Length = 301

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 86/271 (31%), Gaps = 27/271 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F   +     ++V VSGG DS  LL  +      +    I F  ++V+    +   
Sbjct: 37  AIRDF-NMIEEGDKVMVCVSGGKDSYTLLDIMLQF---KRIAPINFDVVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + +       ++ + +       A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD L T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           +   R       P N     +  +R  +   +RD D        K+   +   + N    
Sbjct: 207 YAELRQFPII--PCNLCGSQENLQRAMLNEMLRDWDKQYP----KRLHSIFGALQNVSPS 260

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
            +         ++ +  +        L   L
Sbjct: 261 QLADRELFDFEALDSQRELDFKDPEELKNRL 291


>gi|283832996|ref|ZP_06352737.1| PP-loop family protein [Citrobacter youngae ATCC 29220]
 gi|291071608|gb|EFE09717.1| PP-loop family protein [Citrobacter youngae ATCC 29220]
          Length = 311

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 89/257 (34%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        ++  +  
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG---FPEHILPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + +V        K+  P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  QQLGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F   +      
Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFSEAKGFPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F  ++  V + ++ +          
Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLSDINLFDFKGIKH 267

Query: 248 SIIAISQDILNIDSTLL 264
               ++   L  D   +
Sbjct: 268 GSEVVNGGDLAFDREEI 284


>gi|262369470|ref|ZP_06062798.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter
           johnsonii SH046]
 gi|262315538|gb|EEY96577.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter
           johnsonii SH046]
          Length = 307

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 79/255 (30%), Gaps = 21/255 (8%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F + +     ++V +SGG DS  LL  +      +    I F  ++V+    +   
Sbjct: 37  AIRDF-KMIEEGDKVMVCISGGKDSYTLLDIMLQF---KRIAPINFDVVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + ++                   A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYLEENNIPYYILEKDTYSITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD L T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDILATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +   R       P N     +    R  + D+         K+   +   + N     + 
Sbjct: 207 YAEMRQFPII--PCNLCGS-QENLQRAMLNDMLREWDKAHPKRLHSIFGALQNVSPSQLA 263

Query: 240 KYLTVHMRSIIAISQ 254
                   ++ +  +
Sbjct: 264 DRELFDFEALDSERE 278


>gi|302390349|ref|YP_003826170.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200977|gb|ADL08547.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 316

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 23/201 (11%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E VR  +R          +LV VSGG DSM L   L              +A+ ++  + 
Sbjct: 32  EQVRRNIRREKMFGPKDRVLVVVSGGKDSMALWHILLK-------EGYDVTAMYINLGIG 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------LISE 112
           + ++     V            V + +  +    +   ARE R +           L ++
Sbjct: 85  DYSERSQEVVERFSEEHEAPLIVKNIE-KEYGLNIPWLAREIRRSTCSLCGTIKRYLFNK 143

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A      ++ T H  DD+  T+       + E  +          +   +   +P    
Sbjct: 144 VALDEGFDVVATGHNLDDEAATLLGNVL-SWQEGYLARQSPVLPSTHPKLVKKVKPLFTL 202

Query: 173 RREDIRSFLLQRNISWCEDPS 193
              +  +++L   IS+  +  
Sbjct: 203 TERENLAYVLFNGISFIHEEC 223


>gi|229828920|ref|ZP_04454989.1| hypothetical protein GCWU000342_01005 [Shuttleworthia satelles DSM
           14600]
 gi|229792083|gb|EEP28197.1| hypothetical protein GCWU000342_01005 [Shuttleworthia satelles DSM
           14600]
          Length = 484

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 48/237 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----------K 67
              I V +SGG DSM +      +L                H  +  +           +
Sbjct: 228 GDKIAVCISGGKDSMIMAKLFQELLR---------------HGKQNFSLEFLLMNPGYNE 272

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           +  R ++D    L I   V           +            R   +   A+ +    I
Sbjct: 273 ENYRRITDNARLLGIPIRVFESSIYDIVAGEEIENPCYLCARMRRGHLYAKARELGCNKI 332

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSF 180
              H FDD +ET+ M         G  +  M   +       + + RP    R  DI  +
Sbjct: 333 ALGHHFDDVIETILMGML-----YGGQIQTMMPKVHSTNFQGMELIRPLYLVREADIIHW 387

Query: 181 LLQRNISWC------EDPSN----TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
               ++ +        D  +     +   +R  ++  +R++     Y++   F+ + 
Sbjct: 388 ARYNDLRFILCACRLTDSCSVVGGAETGSKRAEIKALIRELKKTNPYVEKNIFRSVE 444


>gi|85859574|ref|YP_461776.1| tRNA s2C32 biosynthesis protein [Syntrophus aciditrophicus SB]
 gi|85722665|gb|ABC77608.1| tRNA s2C32 biosynthesis protein [Syntrophus aciditrophicus SB]
          Length = 265

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 71/225 (31%), Gaps = 23/225 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS-----FGKIKFSAISVDHCLRETAKD 68
           R +    H+LV VSGG           ++L   +       +   + + +D      A  
Sbjct: 25  RMIEEGDHVLVGVSGG-------ADSLALLDLLNTPMIFVPEFSLTVVHIDPGFDPDAAG 77

Query: 69  EVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +          + +          +   +          R   I E A  I    I
Sbjct: 78  -YDRLESYMKAGGYNYVMEKTDIGPLSHSDYNKKNPCFLCSRLRRKRIFEIAGEIGCNKI 136

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             AH  DD +ET+ +             + M D  ++  ++ I RP    R E I+ +  
Sbjct: 137 ALAHHQDDMIETLLINMFYGREIS----TMMPDQPIFGGSMHIIRPLTYIREELIKKYSR 192

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +R     E    T+    R  ++  +  ++     ++   F+ + 
Sbjct: 193 EREFPIVESSCPTNPVSRRRYIKNLLDSLEKENKDIRANIFKAMS 237


>gi|188590997|ref|YP_001795597.1| c32 tRNA thiolase [Cupriavidus taiwanensis LMG 19424]
 gi|205830576|sp|B2AGH6|TTCA_CUPTR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|170937891|emb|CAP62875.1| putative ATP pyrophosphatase [Cupriavidus taiwanensis LMG 19424]
          Length = 308

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 24/277 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80
           +LV +SGG DS  +L  L ++   R+  K K  A+++D   +        ++  +    +
Sbjct: 34  VLVCMSGGKDSYTMLSVLMALQK-RAPIKFKLIAMNLD-QKQPG---FPEHILPEYLKSV 88

Query: 81  RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + + +V                   +     R  +I   AK + A  I   H  DD + 
Sbjct: 89  GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVN 148

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDP 192
           T ++         G  +  M   +  D    I  RP   C  +DI S+           P
Sbjct: 149 TFFLNMF-----FGGKMKAMPPKLATDDGAHIVIRPLAYCSEKDIASYARAMEFPII--P 201

Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            N     +  +R +V   +++ +          F  LR  V + +A       T     +
Sbjct: 202 CNLCGSQENLQRKKVSEMLQEWERQNPGRIDNIFSALRNVVPSHLADTELFPFTGLATGL 261

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
             + +  L  ++T     L  + ++   ++    +  
Sbjct: 262 AKVDEASLFGETTFQQQPLTFAGSLDENRMEFVRFER 298


>gi|330974376|gb|EGH74442.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 274

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 87/273 (31%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+++        ++ ++        ++   
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID       + V
Sbjct: 239 LQNVQPSQLADRNLFDFTNLRIDEAAASRFVNV 271


>gi|205830644|sp|Q0HIM8|TTCA_SHESM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830645|sp|Q0HVA7|TTCA_SHESR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830649|sp|A0KX28|TTCA_SHESA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 310

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 21/179 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+  + +  A+++D   +        +V       L I +
Sbjct: 44  LSGGKDSYAMLDILLNLQ-QRAPVQFEIIAVNLD-QKQPG---FPEHVLPAYLDSLNIPY 98

Query: 85  SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++                   +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 99  HILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETMFL 158

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                    G  +  M   +L D     + RP   CR +D+  +   +       P N 
Sbjct: 159 NMF-----YGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYAELKKFPII--PCNL 210


>gi|257463784|ref|ZP_05628172.1| PP family ATPase [Fusobacterium sp. D12]
 gi|317061329|ref|ZP_07925814.1| PP family ATPase [Fusobacterium sp. D12]
 gi|313687005|gb|EFS23840.1| PP family ATPase [Fusobacterium sp. D12]
          Length = 262

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 16/190 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             I++V+ F   LV     I V VSGG DS+ L      +  DRS    +   IS++   
Sbjct: 22  KFIKAVQDF--ELVENGDKIAVGVSGGKDSLLLCKLFQELEKDRS-KHFEVHFISMNPGF 78

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQ--TGLMAAAREARYALISEHAKTI 117
              A D  ++  ++   L I   +     W+ +  Q          + R  ++ +  + +
Sbjct: 79  --EAMDMDKFQQNL-KELGINCELFDANVWQVAFEQDPESPCFLCAKMRRGVLYKKVEEL 135

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +        K    + +         L I RP +  + +DI
Sbjct: 136 GCNKLALGHHFDDVIETTLINLFYASTVK----TMLPKVSSTSGKLQIIRPLVYVKEQDI 191

Query: 178 RSFLLQRNIS 187
           +SF+    I 
Sbjct: 192 KSFMKTNEIE 201


>gi|153000684|ref|YP_001366365.1| C32 tRNA thiolase [Shewanella baltica OS185]
 gi|217973395|ref|YP_002358146.1| C32 tRNA thiolase [Shewanella baltica OS223]
 gi|151365302|gb|ABS08302.1| PP-loop domain protein [Shewanella baltica OS185]
 gi|217498530|gb|ACK46723.1| PP-loop domain protein [Shewanella baltica OS223]
          Length = 322

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+  + +  A+++D   +        +V      +L + +
Sbjct: 56  LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLDKLNVPY 110

Query: 85  SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 111 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 170

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195
                    G  +  M   +L D     + RP   CR +D+  +   R       P N  
Sbjct: 171 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNLC 223

Query: 196 --DDRFERVRVRRFVRDIDLH 214
              +  +R  V+  +   D  
Sbjct: 224 GSQENLKRAAVKDMLNQWDRQ 244


>gi|67588028|ref|XP_665313.1| cancer-associated gene protein like (41.3 kD) (4A872)
           [Cryptosporidium hominis TU502]
 gi|54655939|gb|EAL35084.1| cancer-associated gene protein like (41.3 kD) (4A872)
           [Cryptosporidium hominis]
          Length = 306

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 34/263 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       + V +SGG DS  LL  L+ + + R    I+   I+VD  ++    D +  V
Sbjct: 4   RMFKRGNRVGVCISGGKDSSVLLNVLYEL-NKRKDYGIELELIAVDEGIKGYRDDSLEVV 62

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                      +++S+K+              ++         R   +   +  +NA +I
Sbjct: 63  KYQQEYYNCPLTILSFKDMFNTTMDEIQSKSSKSNSCTYCGVFRRKALDIGSYKVNADVI 122

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM----------------GLSGMCDTILYDLNLW-I 165
            T H+ DD  ET+ +   R    +                   +          LN+   
Sbjct: 123 CTGHSCDDTCETLLLNILRGDFNRLRRCINPITNNEITKTKDQMQNHDSQNEAFLNIKPR 182

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTD-DRFE---RVRVRRFVRDIDLHALYLKMK 221
            +P + C  ++I  +    N+ +         D +    R  +R+ ++  D    +  + 
Sbjct: 183 VKPLMYCYEKEIVLYAHYLNLKYFSTECTYSVDAYRGVSREFIRK-IQSFDYKYSFNMIL 241

Query: 222 KFQDLRVKVNNAVAMLIPKYLTV 244
             Q+L ++ +N+    I +  T+
Sbjct: 242 AAQELNLEQSNSSPNYIARKCTI 264


>gi|304408712|ref|ZP_07390333.1| PP-loop domain protein [Shewanella baltica OS183]
 gi|307305541|ref|ZP_07585289.1| PP-loop domain protein [Shewanella baltica BA175]
 gi|304352533|gb|EFM16930.1| PP-loop domain protein [Shewanella baltica OS183]
 gi|306911844|gb|EFN42269.1| PP-loop domain protein [Shewanella baltica BA175]
          Length = 322

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 24/201 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+  + +  A+++D   +        +V      +L + +
Sbjct: 56  LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLDKLNVPY 110

Query: 85  SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 111 HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 170

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT- 195
                    G  +  M   +L D     + RP   CR +D+  +   R       P N  
Sbjct: 171 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNLC 223

Query: 196 --DDRFERVRVRRFVRDIDLH 214
              +  +R  V+  +   D  
Sbjct: 224 GSQENLKRAAVKDMLNQWDRQ 244


>gi|50085874|ref|YP_047384.1| C32 tRNA thiolase [Acinetobacter sp. ADP1]
 gi|81392465|sp|Q6F8Q3|TTCA_ACIAD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|49531850|emb|CAG69562.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
          Length = 301

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 20/196 (10%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F + +     ++V VSGG DS  LL  L      +    I F  ++V+    +   
Sbjct: 37  AIRDF-KMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + +       ++ + +       A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD + T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNT 195
           +   R       P N 
Sbjct: 207 YADLRKFPII--PCNL 220


>gi|254468643|ref|ZP_05082049.1| hypothetical protein KB13_868 [beta proteobacterium KB13]
 gi|207087453|gb|EDZ64736.1| hypothetical protein KB13_868 [beta proteobacterium KB13]
          Length = 277

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 74/215 (34%), Gaps = 20/215 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V +SGG DS  LL  L ++   R+       A+++D   +    + V    D  +   
Sbjct: 42  VMVCLSGGKDSYTLLSLLSAL-RKRAPIDFSIVAMNLD-QKQPGFPENVLP--DYLNSHG 97

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + + +++                  +     R  +I   A+ I A  I   H  +D +ET
Sbjct: 98  VDYKIITEDTYSIVKEKIPEGKTTCSLCSRLRRGIIYRVAREIGANKIALGHHKNDIVET 157

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
            +M        K    S     +  D    + RP      +DI SF    N      P N
Sbjct: 158 FFMNMFFGSKLK----SMPPKLLSDDQTNIVIRPLAYIEEKDIISFSKTMNYPII--PCN 211

Query: 195 T---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                +  +R +++  +   +          FQ L
Sbjct: 212 LCGSQENLQRNKIKSMLNSWEKEQPGRINNIFQSL 246


>gi|66046934|ref|YP_236775.1| C32 tRNA thiolase [Pseudomonas syringae pv. syringae B728a]
 gi|75501097|sp|Q4ZQ35|TTCA_PSEU2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|63257641|gb|AAY38737.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 274

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+++        ++ ++        ++   
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID T     + V
Sbjct: 239 LQNVQPSQLADRNLFDFTNLRIDETAASRFVNV 271


>gi|153955725|ref|YP_001396490.1| hypothetical protein CKL_3111 [Clostridium kluyveri DSM 555]
 gi|219856094|ref|YP_002473216.1| hypothetical protein CKR_2751 [Clostridium kluyveri NBRC 12016]
 gi|146348583|gb|EDK35119.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219569818|dbj|BAH07802.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 299

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 17/192 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHC 61
             + ++  F  +LV     + VAVSGG DSM +      +         I+F A+  D  
Sbjct: 39  KFVRAISEF--NLVEEGDRVGVAVSGGKDSMLMAKLFQELKRHWKVNFHIEFIAM--DPG 94

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEHAKT 116
             E+ +     + + C+ L I   V      +  ++  +        + R   +   A+ 
Sbjct: 95  YHESNR---NLLIENCNYLNIPLHVFESHIFNVVDNIAKDYPCYICAKMRRGALYSKAQQ 151

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +  + +   H F+D +ET  +      + K M L  +        N+ + RP       +
Sbjct: 152 LGCSKLALGHHFNDVIETTLLNLFYGGSFKTM-LPKLKSKNF--KNIELIRPLYFVEESN 208

Query: 177 IRSFLLQRNISW 188
           +++F+    IS 
Sbjct: 209 VKAFMKNAGISP 220


>gi|332141492|ref|YP_004427230.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551514|gb|AEA98232.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 317

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 21/185 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
             ++V +SGG DS  +L  L  +   +    I F  ++V+  L +       +V  +   
Sbjct: 49  DKVMVCLSGGKDSYTMLDILLFL---KKIAPIHFDIVAVN--LDQKQPGFPEHVLPEYLE 103

Query: 79  RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           R+ + + +V        K+  P+     +     R  ++   AK + AT I   H  DD 
Sbjct: 104 RIGVDYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDM 163

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCE 190
           LET ++            L  M   ++ D    I  RP   C  +DI  +          
Sbjct: 164 LETFFLNMFHGGK-----LKSMPPKLVSDNGEHIVIRPLAYCTEKDIVKYSQAVEFPII- 217

Query: 191 DPSNT 195
            P N 
Sbjct: 218 -PCNL 221


>gi|229825237|ref|ZP_04451306.1| hypothetical protein GCWU000182_00590 [Abiotrophia defectiva ATCC
           49176]
 gi|229790609|gb|EEP26723.1| hypothetical protein GCWU000182_00590 [Abiotrophia defectiva ATCC
           49176]
          Length = 280

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 74/196 (37%), Gaps = 26/196 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +++V+ +   +     I V +SGG DS  L   +  +   R F + +   I +D    
Sbjct: 25  NFVKAVKEY-ELIKEGDRIAVCISGGKDSFLLAKLMQELKRHRKF-EYELKFIVMDPGYN 82

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
            E +    + + +    L I   +   +        +          R   +   AK + 
Sbjct: 83  SENS----KLIEENAKLLEIPVEIFHSEIFDVVVDIEKSPCYLCARMRRGHLYSKAKELG 138

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRC 172
              I   H FDD +ETV M         GM  +G  +T++  L       + + RP    
Sbjct: 139 CNKIALGHHFDDAIETVLM---------GMFYAGKYETMMPKLHSQNFEGMELIRPLYMV 189

Query: 173 RREDIRSFLLQRNISW 188
           R E IR+++   N+ +
Sbjct: 190 REEYIRAWVKYNNLRF 205


>gi|188533797|ref|YP_001907594.1| C32 tRNA thiolase [Erwinia tasmaniensis Et1/99]
 gi|254790128|sp|B2VKN8|TTCA_ERWT9 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|188028839|emb|CAO96701.1| Predicted ATPase of the PP-loop superfamily [Erwinia tasmaniensis
           Et1/99]
          Length = 309

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 96/294 (32%), Gaps = 23/294 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   ++  
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD---QKQP 82

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119
                 + +   +  + + +V                   +     R  ++   A  +  
Sbjct: 83  GFPAHILPEYLEQQGVEYKIVDEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGC 142

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI  
Sbjct: 143 TKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIER 198

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           F + R       P N        +R  +   +RD D          F  ++  V + +A 
Sbjct: 199 FAIARQYPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFTAMQNVVPSHLAD 256

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERV 290
                          I    L  D   L   L+ SA       + P    + ++
Sbjct: 257 ADLFDFKQIRHGSEVIDGGDLAFDRETL--PLQPSAWQPEEDEATPARLDVVQI 308


>gi|22125890|ref|NP_669313.1| C32 tRNA thiolase [Yersinia pestis KIM 10]
 gi|45441914|ref|NP_993453.1| C32 tRNA thiolase [Yersinia pestis biovar Microtus str. 91001]
 gi|108807679|ref|YP_651595.1| C32 tRNA thiolase [Yersinia pestis Antiqua]
 gi|108811956|ref|YP_647723.1| C32 tRNA thiolase [Yersinia pestis Nepal516]
 gi|145598114|ref|YP_001162190.1| C32 tRNA thiolase [Yersinia pestis Pestoides F]
 gi|149365753|ref|ZP_01887788.1| hypothetical protein YPE_0928 [Yersinia pestis CA88-4125]
 gi|153947235|ref|YP_001400777.1| C32 tRNA thiolase [Yersinia pseudotuberculosis IP 31758]
 gi|162419399|ref|YP_001606655.1| C32 tRNA thiolase [Yersinia pestis Angola]
 gi|165926443|ref|ZP_02222275.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938602|ref|ZP_02227158.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166010640|ref|ZP_02231538.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210960|ref|ZP_02236995.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400851|ref|ZP_02306357.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422098|ref|ZP_02313851.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424807|ref|ZP_02316560.1| PP-loop family protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467094|ref|ZP_02331798.1| PP-loop family protein [Yersinia pestis FV-1]
 gi|170024151|ref|YP_001720656.1| C32 tRNA thiolase [Yersinia pseudotuberculosis YPIII]
 gi|218929427|ref|YP_002347302.1| C32 tRNA thiolase [Yersinia pestis CO92]
 gi|229837856|ref|ZP_04458015.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895014|ref|ZP_04510192.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           Pestoides A]
 gi|229898417|ref|ZP_04513564.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902264|ref|ZP_04517384.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           Nepal516]
 gi|270490553|ref|ZP_06207627.1| PP-loop family protein [Yersinia pestis KIM D27]
 gi|294503652|ref|YP_003567714.1| hypothetical protein YPZ3_1542 [Yersinia pestis Z176003]
 gi|123072798|sp|Q1C7C2|TTCA_YERPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123073391|sp|Q1CIQ7|TTCA_YERPN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123777122|sp|Q7CIP8|TTCA_YERPE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830672|sp|A7FHP9|TTCA_YERP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830674|sp|A9R8Q5|TTCA_YERPG RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830675|sp|A4TIV5|TTCA_YERPP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830676|sp|B1JJU2|TTCA_YERPY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|21958825|gb|AAM85564.1|AE013802_9 hypothetical protein y1998 [Yersinia pestis KIM 10]
 gi|45436777|gb|AAS62330.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775604|gb|ABG18123.1| hypothetical protein YPN_1794 [Yersinia pestis Nepal516]
 gi|108779592|gb|ABG13650.1| hypothetical protein YPA_1684 [Yersinia pestis Antiqua]
 gi|115348038|emb|CAL20963.1| conserved hypothetical protein [Yersinia pestis CO92]
 gi|145209810|gb|ABP39217.1| hypothetical protein YPDSF_0811 [Yersinia pestis Pestoides F]
 gi|149292166|gb|EDM42240.1| hypothetical protein YPE_0928 [Yersinia pestis CA88-4125]
 gi|152958730|gb|ABS46191.1| PP-loop family protein [Yersinia pseudotuberculosis IP 31758]
 gi|162352214|gb|ABX86162.1| PP-loop family protein [Yersinia pestis Angola]
 gi|165913476|gb|EDR32097.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921664|gb|EDR38861.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990342|gb|EDR42643.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166208140|gb|EDR52620.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958910|gb|EDR55931.1| PP-loop family protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049704|gb|EDR61112.1| PP-loop family protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055994|gb|EDR65772.1| PP-loop family protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750685|gb|ACA68203.1| PP-loop domain protein [Yersinia pseudotuberculosis YPIII]
 gi|229680599|gb|EEO76695.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           Nepal516]
 gi|229688707|gb|EEO80776.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694222|gb|EEO84269.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229702109|gb|EEO90130.1| putative tRNA 2-thiocytidine (s(2)C32) synthase [Yersinia pestis
           Pestoides A]
 gi|262362230|gb|ACY58951.1| hypothetical protein YPD4_2044 [Yersinia pestis D106004]
 gi|262365563|gb|ACY62120.1| hypothetical protein YPD8_1435 [Yersinia pestis D182038]
 gi|270339057|gb|EFA49834.1| PP-loop family protein [Yersinia pestis KIM D27]
 gi|294354111|gb|ADE64452.1| hypothetical protein YPZ3_1542 [Yersinia pestis Z176003]
 gi|320014992|gb|ADV98563.1| putative magnesium chelatase family protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 313

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L S+            A+++D   +    +++        
Sbjct: 39  GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFSLIAVNLD-QKQPGFPEDILPA--YLD 94

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 95  KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII-- 208

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +              
Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKSITHD 268

Query: 249 IIAISQDILNIDSTLL 264
              I    L  D   L
Sbjct: 269 SDIIDGGDLAFDREAL 284


>gi|302188993|ref|ZP_07265666.1| C32 tRNA thiolase [Pseudomonas syringae pv. syringae 642]
          Length = 274

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+++        ++ ++        ++   
Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID T     + V
Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271


>gi|295115158|emb|CBL36005.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [butyrate-producing bacterium SM4/1]
          Length = 131

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            R   +++ AK +    I  AH  DD ++T+ +        +G   S    T L  ++L+
Sbjct: 1   MRKGALNQAAKNLGCNKIAYAHHRDDLIDTMLLSLI----YEGRFHSFSPKTYLDRMDLF 56

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQ 224
           + RPFL     DI  F  + ++  C++P   D + +R  V++ ++ I++ A  +K + F 
Sbjct: 57  VIRPFLYIPEADIIGFKNRYSLPVCKNPCPVDGKTKREYVKQLIKTINMEASGVKDRLFH 116

Query: 225 DL 226
            +
Sbjct: 117 AI 118


>gi|298530265|ref|ZP_07017667.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509639|gb|EFI33543.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 299

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 26/185 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDV 76
               IL+A+SGG DS+ L   LH +  + +   I  +           + +  R +V   
Sbjct: 46  KEDRILIALSGGKDSLALARELHLLGYNTAGLYIDLAI--------PGSSETARDHVERF 97

Query: 77  CSRLRIAHSV------------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           C  L I+  V            V  K ++P   +    R  RY   +  A     +++ T
Sbjct: 98  CRDLGISLHVLEMEKEGMPIPEVRKKFNRPVCSVC--GRIKRY-YFNRFALDNGFSVLAT 154

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD+   ++    R +    +G  G  D       +   +P  R    +  ++    
Sbjct: 155 GHNLDDEAARLFSNVMR-WDVSYLGSQG-PDLPAEQGFVRKVKPLYRLSEFETANYSFLA 212

Query: 185 NISWC 189
            I +C
Sbjct: 213 GIDYC 217


>gi|332993129|gb|AEF03184.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alteromonas sp. SN2]
          Length = 313

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
             ++V +SGG DS  +L  L  +   +    I F  I+V+  L +       +V  +   
Sbjct: 49  DKVMVCLSGGKDSYAMLDILMFL---KRIAPIHFDIIAVN--LDQKQPGFPEHVLPEYLE 103

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + +V                   +     R  ++   AK + AT I   H  DD 
Sbjct: 104 SVGVEYKIVEEDTYSIVMDKVPEGKTTCSLCSRLRRGILYSTAKKLGATKIALGHHRDDM 163

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCE 190
           LET ++            L  M   ++ D    I  RP   C  +DI+ +          
Sbjct: 164 LETFFLNMFHGGK-----LKSMPPKLVSDNGEHIVIRPLAYCTEKDIQRYSDAVEFPII- 217

Query: 191 DPSNT 195
            P N 
Sbjct: 218 -PCNL 221


>gi|163854634|ref|YP_001628932.1| C32 tRNA thiolase [Bordetella petrii DSM 12804]
 gi|205830557|sp|A9HY25|TTCA_BORPD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|163258362|emb|CAP40661.1| conserved hypothetical protein [Bordetella petrii]
          Length = 324

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 20/223 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ++V +SGG DS  LL  L S+     F      A+++D   +     EV    +  
Sbjct: 46  AGDRVMVCLSGGKDSYALLDILLSLRKRAPFS-FDIVAVNLD-QKQPGFPPEVLP--NYL 101

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + L +   +       +  +       + +     R  ++   A  + AT I   H  DD
Sbjct: 102 TSLGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVAGELGATKIALGHHRDD 161

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T ++         G   +     +  D    + RP       D+ ++   +      
Sbjct: 162 ILATFFLNLFYG----GKAKAMPPKLVSDDGRHTVIRPLAYVPEHDLVAYAKFKQFPII- 216

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            P N     +  +R  V R +++ D          F  L   V
Sbjct: 217 -PCNLCGSQENLKRQEVSRMIQEWDRRHPGRSWNVFNALSRIV 258


>gi|329896676|ref|ZP_08271669.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium
           IMCC3088]
 gi|328921612|gb|EGG28988.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium
           IMCC3088]
          Length = 278

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 70/205 (34%), Gaps = 22/205 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L S+         +  A+++D   +        +V     
Sbjct: 35  GDRVMVCLSGGKDSYTMLELLMSLQKSAPIS-FELVAVNLD-QKQPG---FPEHVLPQYL 89

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L I + +       V  +               R   +   A+ I A  I   H  DD
Sbjct: 90  DALGIEYYILERDTYSVVKRVIPEGKTTCGLCSRLRRGTLYGFAEEIGAQKIALGHHRDD 149

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+++        +G   +     +  D    I RP   C+  DI  F   R      
Sbjct: 150 IVETLFLNMF----FQGSLKAMPPKLLSDDGKNVIIRPLAYCKESDIERFAQARAFPII- 204

Query: 191 DPSNT---DDRFERVRVRRFVRDID 212
            P N     D  +RV+V+  +   +
Sbjct: 205 -PCNLCGSQDHLQRVQVKEMLAQWE 228


>gi|238782626|ref|ZP_04626657.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia bercovieri
           ATCC 43970]
 gi|238716553|gb|EEQ08534.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia bercovieri
           ATCC 43970]
          Length = 313

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L S+            A+++D   +    +++        
Sbjct: 39  GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 94

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 95  KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII-- 208

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +              
Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKAITHD 268

Query: 249 IIAISQDILNIDSTLL 264
              +    L  D   L
Sbjct: 269 SEVVDGGDLAFDREEL 284


>gi|205830650|sp|A6WNB3|TTCA_SHEB8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 310

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 69/179 (38%), Gaps = 21/179 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+  + +  A+++D   +        +V      +L + +
Sbjct: 44  LSGGKDSYAMLDILMNLQ-QRAPIQFEIIAVNLD-QKQPG---FPEHVLPAYLDKLNVPY 98

Query: 85  SVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 99  HILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 158

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                    G  +  M   +L D     + RP   CR +D+  +   R       P N 
Sbjct: 159 NMF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYANLREFPII--PCNL 210


>gi|292488333|ref|YP_003531215.1| hypothetical protein EAMY_1857 [Erwinia amylovora CFBP1430]
 gi|292899532|ref|YP_003538901.1| hypothetical protein EAM_1822 [Erwinia amylovora ATCC 49946]
 gi|291199380|emb|CBJ46497.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
 gi|291553762|emb|CBA20807.1| UPF0021 protein HI1371.1 [Erwinia amylovora CFBP1430]
 gi|312172472|emb|CBX80729.1| UPF0021 protein HI1371.1 [Erwinia amylovora ATCC BAA-2158]
          Length = 309

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 90/268 (33%), Gaps = 21/268 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   ++  
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPVS-FSLVAVNLD---QKQP 82

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119
                 + +   +L + + +V+                  +     R  ++   A  +  
Sbjct: 83  GFPAHILPEYLEKLGVQYKIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGC 142

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           + I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+ 
Sbjct: 143 SKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQR 198

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           F   R       P N        +R  +   +RD D          F  ++  V + +A 
Sbjct: 199 FAFARQYPII--PCNLCGSQPNLQRQAIGDMLRDWDKRYPGRIETMFTAMQNVVPSHLAD 256

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264
                     R    +    L  D   L
Sbjct: 257 ADLFDFKHIRRGADVVDGGDLAFDRETL 284


>gi|206890224|ref|YP_002248861.1| ATPase, PP-loop superfamily [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742162|gb|ACI21219.1| ATPase, PP-loop superfamily [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 304

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 26/200 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             IE  + F +       IL+AVSGG DSM +L AL  +       +    A+ +D  + 
Sbjct: 42  ETIEKFKMFSK----KDSILIAVSGGKDSMSILKALKDM-------EYNIKALHIDVGIG 90

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEH 113
           E +K    +V + C +  I+   +  +              +  + A     R  +++  
Sbjct: 91  EVSKKSKEFVQEFCEKEDISLKTIKLQEEIQLPLKELSKISKRPICAVCGMLRRYILN-- 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +  +   I+T HT +D++  +       +    +           +      +P     
Sbjct: 149 -RESSGQTIVTGHTLNDEVAFILKNMI--FWNDELLARIYPVLHEKEGFSRKVKPLCLIT 205

Query: 174 REDIRSFLLQRNISWCEDPS 193
            E+ R F    +I + ++P 
Sbjct: 206 EEETRFFCETLSIKYIDEPC 225


>gi|259908376|ref|YP_002648732.1| C32 tRNA thiolase [Erwinia pyrifoliae Ep1/96]
 gi|224963998|emb|CAX55503.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Erwinia pyrifoliae
           Ep1/96]
 gi|283478316|emb|CAY74232.1| UPF0021 protein HI1371.1 [Erwinia pyrifoliae DSM 12163]
          Length = 310

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 21/268 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   ++  
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPVS-FSLVAVNLD---QKQP 82

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119
                 + +   +L + + +V+                  +     R  ++   A  +  
Sbjct: 83  GFPAHILPEYLEQLGVEYKIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGC 142

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           + I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+ 
Sbjct: 143 SKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQR 198

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           F + R       P N        +R  +   +RD D          F  ++  V + +A 
Sbjct: 199 FAIARQYPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETLFTAMQNVVPSHLAD 256

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264
                          +    L  D   L
Sbjct: 257 ANLFDFKHIRHGADVVDGGDLAFDRETL 284


>gi|148262788|ref|YP_001229494.1| C32 tRNA thiolase [Geobacter uraniireducens Rf4]
 gi|205830590|sp|A5GBX4|TTCA_GEOUR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|146396288|gb|ABQ24921.1| PP-loop domain protein [Geobacter uraniireducens Rf4]
          Length = 252

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 13/172 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75
              I VAVSGG DS  LL  L ++   R+  + +  AI++D      R  A     ++ +
Sbjct: 29  GDRIAVAVSGGKDSYTLLHILETL-RKRAPVRYEIMAINIDSGYPGFR--ADIIEEHLRE 85

Query: 76  ---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              V    +  H  +  +  +P +   +     +  ++   A+  N   +   H  DD +
Sbjct: 86  HGFVAHMEKTDHYGIIKEKRRPDSSYCSICARLKRGVLYGLAQRYNCNKLALGHHMDDFI 145

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           ET+ +      + K M  S + D  L      + RP +    EDI  F    
Sbjct: 146 ETLLLNQFFVGSLKAMAPSMLADNGL----TTVIRPLVYVPEEDIIPFSRNN 193


>gi|330949806|gb|EGH50066.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           Cit 7]
          Length = 274

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+++        ++ ++        ++   
Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID T     + V
Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271


>gi|114320103|ref|YP_741786.1| PP-loop domain-containing protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226497|gb|ABI56296.1| tRNA s(2)C-32 sulfurtransferase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 294

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 86/249 (34%), Gaps = 22/249 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            ++R + R +     ++V +SGG DS  LL  L  +   R+  + +  A+++D   +   
Sbjct: 18  NAIRDY-RMIEEGDRVMVCLSGGKDSYALLDVLLRLQK-RAPVRFELVAVNLD-QKQPG- 73

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V  +  + L + + ++                   +     R  L+   A+ + 
Sbjct: 74  --FPEHVLPEYLASLGVPYRILEADTYSTVERVIPEGKTKCSLCSRLRRGLLYGAAEEMG 131

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177
            + I   H  DD LET ++         G  L+ M   +  +     + RP        +
Sbjct: 132 CSKIALGHHRDDILETFFLNLF-----YGGRLAAMPPKLRSNNGRHVVIRPLAYVPEPYL 186

Query: 178 RSFLLQRNISWCEDP-SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVA 235
             +  +            +    +R  ++  +R+            F  L+ V+ ++   
Sbjct: 187 ERYAERMAFPIIPCTLCGSQPDLKRQMIKAMLREWGEIEPRRLANIFSALQNVQPSHLAD 246

Query: 236 MLIPKYLTV 244
             +  ++ +
Sbjct: 247 KELYDFINL 255


>gi|169632661|ref|YP_001706397.1| hypothetical protein ABSDF0830 [Acinetobacter baumannii SDF]
 gi|260556474|ref|ZP_05828692.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter
           baumannii ATCC 19606]
 gi|205830459|sp|A3M828|TTCA_ACIBT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254789864|sp|B0VT10|TTCA_ACIBS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|169151453|emb|CAP00197.1| conserved hypothetical protein [Acinetobacter baumannii]
 gi|193078129|gb|ABO13072.2| hypothetical protein A1S_2656 [Acinetobacter baumannii ATCC 17978]
 gi|260409733|gb|EEX03033.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter
           baumannii ATCC 19606]
          Length = 301

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 83/263 (31%), Gaps = 25/263 (9%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F   +     ++V VSGG DS  LL  L      +    I F  ++V+    +   
Sbjct: 37  AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + ++                   A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYMEENNIPYYILEKDTYSITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD + T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA- 235
           +   R       P N     +  +R  +   +R+ D          F  L+    + +A 
Sbjct: 207 YAELRKFPII--PCNLCGSQENLQRAMINEMLREWDRQYPKRLHSIFGALQNVSPSQLAD 264

Query: 236 -MLIPKYLTVHMRSIIAISQDIL 257
             L    +    R +     + L
Sbjct: 265 RDLFDFEVLDSQRELDFKDPEEL 287


>gi|295090663|emb|CBK76770.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Clostridium cf. saccharolyticum K10]
          Length = 309

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%)

Query: 10  RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           R FV++L          +I V +SGG DSM L   +  +L      +     + +D    
Sbjct: 57  RPFVKALNEYDMIQEGDNIAVCISGGKDSMLLAKCMQEILR-HGKMEFGLHFLVMDPGYN 115

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
              +   R + +    + I  +V                       R   +  +AK +  
Sbjct: 116 PENR---RMIEENARIMGIPITVFESDIFNVVVDVDQSPCYLCARMRRGYLYANAKKLGC 172

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I   H FDD +ET+ M          M       +  ++  + + RP    +  DI++
Sbjct: 173 NKIALGHHFDDVIETILMSMLYGAQVNTM--MPKLHSTNFE-GMELIRPLYLVKEADIQA 229

Query: 180 FLLQRNISW 188
           +     + +
Sbjct: 230 WRDFNQLRF 238


>gi|237798956|ref|ZP_04587417.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021810|gb|EGI01867.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 274

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 87/273 (31%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        I+F  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIRFEIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L + + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+D+ L         ++        ++   
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLD--------WERKTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID T     + V
Sbjct: 239 LQNVQPSQLADRNLFDFSSLRIDETAASRFVNV 271


>gi|332285699|ref|YP_004417610.1| hypothetical protein PT7_2446 [Pusillimonas sp. T7-7]
 gi|330429652|gb|AEC20986.1| hypothetical protein PT7_2446 [Pusillimonas sp. T7-7]
          Length = 323

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 22/223 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L ++ + R+       A+++D   +        +V  D  
Sbjct: 53  GDKVMVCLSGGKDSYTMLDILLTLKA-RAPINFDIIAVNLD-QKQPG---FPEHVLPDYL 107

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + +   +       +  +         +     R  ++   A  + AT I   H  DD
Sbjct: 108 RSIDVPFHIENQDTYSIVTRVIPEGKTTCSLCSRLRRGILYRVASELGATKIALGHHRDD 167

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T ++        K M    M D    D    + RP      +DI ++   +      
Sbjct: 168 ILGTFFLNLFYGGRMKAMPPKLMSD----DGKHIVIRPLAYIPEKDIIAYAEMKQFPII- 222

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
            P N     +  +R  V R + + D H        F  L   V
Sbjct: 223 -PCNLCGSQENLKRKEVSRMIAEWDRHFPGRSWNVFGALSRVV 264


>gi|291460401|ref|ZP_06599791.1| PP-loop family protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291416968|gb|EFE90687.1| PP-loop family protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 387

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 11/175 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DSM +      V     F   +   + +D    E  +   R + +  +
Sbjct: 142 GDRICVCISGGKDSMLMAKLFQEVKRHNKFP-FELVFLCMDPGYNEANR---RIIEENAA 197

Query: 79  RLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L I       +        +          R   +   A+ +    I   H +DD +ET
Sbjct: 198 LLGIPLRFFQTEIFDAVFHIEKSPCYVCARMRRGWLYRRARELGCNKIALGHHYDDVIET 257

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           V M     Y+ +   +     +  ++  + + RP    R EDI  +  + ++++ 
Sbjct: 258 VLMGML--YSGQFQAMMPKLRSTNFE-GMELIRPLYLIREEDILRWRDENHLNFI 309


>gi|283785362|ref|YP_003365227.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter
           rodentium ICC168]
 gi|282948816|emb|CBG88417.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Citrobacter
           rodentium ICC168]
          Length = 311

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 88/257 (34%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++        I+FS ++V+  L +       ++  +  
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQS---APIRFSLVAVN--LDQKQPGFPEHILPEYL 93

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + +V                   +     R  ++   A  + AT I   H  DD
Sbjct: 94  EQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F   +      
Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAEAKAFPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F  ++  V + ++ +          
Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLSDINLFDFKGIRH 267

Query: 248 SIIAISQDILNIDSTLL 264
               +    L  D   +
Sbjct: 268 GAEVVDGGDLAFDRQEI 284


>gi|224550205|gb|ACN54187.1| putative cell cycle protein MesJ [Wolbachia endosymbiont of Nasonia
           giraulti]
          Length = 150

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY-----LK 219
           I RP L   R +I  +     + W ED SN D ++ R   R  ++  D   +      L 
Sbjct: 1   IFRPLLNFSRSEIEKYAKLHQLRWIEDRSNYDLKYRRTLYRNLLKASDNQDVLTERICLT 60

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ-DILNIDSTLLFYLLRVSAAICGGQ 278
               +     + +   + +   + VH    I I   +   +   +   LL  S      +
Sbjct: 61  ALHMKRAAKALMHYTRLALNDCVNVHDLGYIEIKLSEFYQLPEEIALRLLLYSIMAIVNK 120

Query: 279 ISLPGYRSMERVMLFLKS 296
              P +RS+  +   +  
Sbjct: 121 HYKPRHRSLIAIFNKISQ 138


>gi|166714054|ref|ZP_02245261.1| hypothetical protein Xoryp_22105 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 305

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 22/245 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     I+V +SGG DS  +L  L  +        + F+ ++V+  L +   D   +V  
Sbjct: 48  IAPGDKIMVCLSGGKDSYTMLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAHVLP 102

Query: 75  DVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L +   +V         +       + +     R   +  +A+T   T I   H 
Sbjct: 103 AYLDALGVPFDIVEQDTYSVVSRVVPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186
            DD + T +M            L+ M   +  D     + RP    R  DI ++   R  
Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
                P N     +    R+ V  +  H  + +  + + +   + +     +        
Sbjct: 218 PII--PCNLCGS-QENLQRQQVGKMLQHWDHEQPGRVEQIARALGDVRPEQLADRTLFDF 274

Query: 247 RSIIA 251
            ++  
Sbjct: 275 LALGR 279


>gi|320353077|ref|YP_004194416.1| PP-loop domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320121579|gb|ADW17125.1| PP-loop domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 253

 Score = 88.0 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 72/223 (32%), Gaps = 19/223 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEVRY 72
           L     +LVAVSGG DS+  L+ L      ++        + VD       E        
Sbjct: 21  LADGDRVLVAVSGGMDSLV-LVWLLLHWRKKAPIDYALEVVHVDMEPEG--EAPGAAAIQ 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---------EARYALISEHAKTINATLIM 123
            +D+ +R  +   +V        +G    AR          +R   + EHA+    T I 
Sbjct: 78  TADLVARFGVQVHIVPALWRPVLSGEGEDARGQDLCFQCARSRRTQLFEHARQTGCTKIA 137

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD +ET  +         G   +      L+   L + RP     + +I +   +
Sbjct: 138 FGHHRDDIVETFLLNLT----CAGNISTMSPRQELFAGRLSLIRPLAYLDKSEIAAIGGE 193

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             +          +R  R  + +    I       K   F  L
Sbjct: 194 LGLEPVRSTCPLSERTRRGEMHQLAEHIYRQIPGAKEHIFAAL 236


>gi|317497510|ref|ZP_07955829.1| rhodanese-like domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895193|gb|EFV17356.1| rhodanese-like domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 404

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 12/192 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +++++ +   +     I + +SGG DSM +      +     F       + +D  
Sbjct: 145 FSKFVKAIKTY-DLVQENDKIAICISGGKDSMLMAKLFQELKRHNKF-HFDLVFLVMDPG 202

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
             E  +   + + +    L I  +V          + +          R   +   AK +
Sbjct: 203 YNEMNR---QIIENNAKLLDIPITVFESDIFDAVYEIEKSPCYLCARMRRGYLYSKAKEL 259

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I   H +DD +ET+ M        + M       +  ++  + + RP    R +DI
Sbjct: 260 GCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPMYLIREDDI 316

Query: 178 RSFLLQRNISWC 189
           + +     + + 
Sbjct: 317 KHWRDYNGLHFI 328


>gi|291558374|emb|CBL37174.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [butyrate-producing bacterium SSC/2]
          Length = 404

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 12/192 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +++++ +   +     I + +SGG DSM +      +     F       + +D  
Sbjct: 145 FSKFVKAIKTY-DLVQENDKIAICISGGKDSMLMAKLFQELKRHNKF-HFDLVFLVMDPG 202

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
             E  +   + + +    L I  +V          + +          R   +   AK +
Sbjct: 203 YNEMNR---QIIENNAKLLDIPITVFESDIFDAVYEIEKSPCYLCARMRRGYLYSKAKEL 259

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I   H +DD +ET+ M        + M       +  ++  + + RP    R +DI
Sbjct: 260 GCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPMYLIREDDI 316

Query: 178 RSFLLQRNISWC 189
           + +     + + 
Sbjct: 317 KHWRDYNGLHFI 328


>gi|296109212|ref|YP_003616161.1| PP-loop domain protein [Methanocaldococcus infernus ME]
 gi|295434026|gb|ADG13197.1| PP-loop domain protein [Methanocaldococcus infernus ME]
          Length = 296

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 80/222 (36%), Gaps = 33/222 (14%)

Query: 7   ESVRFFVRSLVYP-----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           E V   V+ +V P       I + +SGG DS+ +   L+ +    S+ ++K   I +   
Sbjct: 27  EEVERRVKKVVKPYMKRGVKINIGISGGKDSLVMAHILNKL----SYPEVKLRCIFIHEG 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALI 110
           +       +R V   C +  +   V+  K               +    +     R  L+
Sbjct: 83  IEGFRDKALRVVKKFCEKEGLELKVIYLKEEFNYTLDEMITLLKEYKPCSICAVFRRYLL 142

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           ++++K  ++  +   H  DD  +T+ M       +  +      +  +        +P  
Sbjct: 143 NKYSK--DSDYLAIGHNLDDHAQTILMNYIEGNIKNIIYFGKDAEGFVKR-----IKPLK 195

Query: 171 RCRREDIRSFLLQRNISWCEDPSN-TDDRFERVRVRRFVRDI 211
               E+++ +     + + ++P   +   +     R  +++I
Sbjct: 196 YVPEEEVKFYADLVKLEYQKEPCPYSSLSY-----RHKMKEI 232


>gi|260587727|ref|ZP_05853640.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|260541992|gb|EEX22561.1| PP-loop family protein [Blautia hansenii DSM 20583]
          Length = 386

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 19/179 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDV 76
              I V +SGG DSM +      +   R   K+ F  I   +D    ET +  +   + +
Sbjct: 137 GDKIAVCISGGKDSMLMAKLFQELQKHR---KVNFDVIFLVMDPGYNETNRKVIEENARL 193

Query: 77  CSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              L I  ++    +     + +          R   +   AK +    I   H +DD +
Sbjct: 194 ---LNIPITIFETNIFETVYEIEKSPCYLCARMRRGYLYSKAKELGCNKIALGHHYDDVI 250

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           ET+ M         G  +  M   +       + + RP    R +DI+ +    ++ + 
Sbjct: 251 ETILMGML-----YGAQIQTMMPKLHSTNFEGMELIRPMYLIREDDIKHWRDYNDLHFI 304


>gi|167766681|ref|ZP_02438734.1| hypothetical protein CLOSS21_01187 [Clostridium sp. SS2/1]
 gi|167711618|gb|EDS22197.1| hypothetical protein CLOSS21_01187 [Clostridium sp. SS2/1]
          Length = 438

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 12/192 (6%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +++++ +   +     I + +SGG DSM +      +     F       + +D  
Sbjct: 179 FSKFVKAIKTY-DLVQENDKIAICISGGKDSMLMAKLFQELKRHNKF-HFDLVFLVMDPG 236

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
             E  +   + + +    L I  +V          + +          R   +   AK +
Sbjct: 237 YNEMNR---QIIENNAKLLDIPITVFESDIFDAVYEIEKSPCYLCARMRRGYLYSKAKEL 293

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I   H +DD +ET+ M        + M       +  ++  + + RP    R +DI
Sbjct: 294 GCNKIALGHHYDDVIETILMGMLYGAQVQTM--MPKLHSTNFE-GMELIRPMYLIREDDI 350

Query: 178 RSFLLQRNISWC 189
           + +     + + 
Sbjct: 351 KHWRDYNGLHFI 362


>gi|205830657|sp|Q0AA41|TTCA_ALHEH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 314

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 86/249 (34%), Gaps = 22/249 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            ++R + R +     ++V +SGG DS  LL  L  +   R+  + +  A+++D   +   
Sbjct: 38  NAIRDY-RMIEEGDRVMVCLSGGKDSYALLDVLLRLQK-RAPVRFELVAVNLD-QKQPG- 93

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V  +  + L + + ++                   +     R  L+   A+ + 
Sbjct: 94  --FPEHVLPEYLASLGVPYRILEADTYSTVERVIPEGKTKCSLCSRLRRGLLYGAAEEMG 151

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDI 177
            + I   H  DD LET ++         G  L+ M   +  +     + RP        +
Sbjct: 152 CSKIALGHHRDDILETFFLNLF-----YGGRLAAMPPKLRSNNGRHVVIRPLAYVPEPYL 206

Query: 178 RSFLLQRNISWCEDP-SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVA 235
             +  +            +    +R  ++  +R+            F  L+ V+ ++   
Sbjct: 207 ERYAERMAFPIIPCTLCGSQPDLKRQMIKAMLREWGEIEPRRLANIFSALQNVQPSHLAD 266

Query: 236 MLIPKYLTV 244
             +  ++ +
Sbjct: 267 KELYDFINL 275


>gi|226951515|ref|ZP_03821979.1| PP-loop domain-containing protein [Acinetobacter sp. ATCC 27244]
 gi|294651155|ref|ZP_06728489.1| PP-loop superfamily ATPase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837734|gb|EEH70117.1| PP-loop domain-containing protein [Acinetobacter sp. ATCC 27244]
 gi|292822951|gb|EFF81820.1| PP-loop superfamily ATPase [Acinetobacter haemolyticus ATCC 19194]
          Length = 301

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 84/268 (31%), Gaps = 21/268 (7%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R + + +     ++V VSGG DS  LL  L      +    I F  ++V+    +   
Sbjct: 37  AIRDY-KMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + +       ++ + +       A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD + T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDIMATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           +   R       P N     +    R  + D+         K+   +   + N     + 
Sbjct: 207 YAEMRKFPII--PCNLCGS-QENLQRAIINDMLREWDKQYPKRLHSIFGALQNVSPSQLA 263

Query: 240 KYLTVHMRSIIAISQDILNIDSTLLFYL 267
                   ++    +  L     L   L
Sbjct: 264 DRELFDFEALDGQREFDLKDPEELKNRL 291


>gi|26553959|ref|NP_757893.1| hypothetical protein MYPE5070 [Mycoplasma penetrans HF-2]
 gi|26453967|dbj|BAC44297.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
          Length = 264

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 26/200 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS-DRSFGKIKFSAISVD--- 59
           S I + + F   +     I V VSGG DSM +L AL       +S        + +    
Sbjct: 7   SIIRANKAF-NMIKNGDRIAVGVSGGKDSMLMLKALSIYKKIVKSELNWDIDVVGIHLKM 65

Query: 60  ---HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYAL 109
              H        E   +    + + I   VV            K      +   + + A+
Sbjct: 66  NLCH-------IEYDPIIKYWNDMGINFKVVETTMGEILRGQIKKGKIQCSLCSKLKKAI 118

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + + AK +N   +   H  DD +ET +M        +G   +      L   ++W  RPF
Sbjct: 119 LIDEAKKLNCNKVAMGHHADDAIETFFMNMI----NEGRIATFKPSMYLDRSDIWFIRPF 174

Query: 170 LRCRREDIRSFLLQRNISWC 189
           +  R +DI     + N+   
Sbjct: 175 IFAREKDIAKAANKENMPIV 194


>gi|126642690|ref|YP_001085674.1| hypothetical protein A1S_2656 [Acinetobacter baumannii ATCC 17978]
          Length = 259

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 78/252 (30%), Gaps = 24/252 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVSDVC 77
              ++V VSGG DS  LL  L      +    I F  ++V+    +    ++V       
Sbjct: 5   GDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGFPEDVLP--RYM 59

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
               I + ++                   A     R   +   A+ I AT +   H  DD
Sbjct: 60  EENNIPYYILEKDTYSITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGATKVALGHHRDD 119

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            + T ++      + K M        +  D    + RP      +DI  +   R      
Sbjct: 120 IIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIKYAELRKFPII- 174

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA--MLIPKYLTVH 245
            P N     +  +R  +   +R+ D          F  L+    + +A   L    +   
Sbjct: 175 -PCNLCGSQENLQRAMINEMLREWDRQYPKRLHSIFGALQNVSPSQLADRDLFDFEVLDS 233

Query: 246 MRSIIAISQDIL 257
            R +     + L
Sbjct: 234 QRELDFKDPEEL 245


>gi|1513300|gb|AAB06790.1| ORFveg136; similar to Saccharomyces cerevisiae chromosome VII
           reading frame ORF YGL211w encoded by EMBL Accession
           Number Z72733 [Dictyostelium discoideum]
          Length = 357

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 18/208 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   + ++L+ +    +    +S+D  +     D +  V    
Sbjct: 54  RGDRVAIGASGGKDSTVLAEIM-TLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQ 112

Query: 78  SRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  I   ++S+K                 G   +    R   +   A  + A  I+T H
Sbjct: 113 EQYPIPSQILSYKELYNWTMDDIVKEIGLKGNCTSCGVFRRQALDRGAVMLKANKIVTGH 172

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQR 184
             DD  ETV+M   R    +       C  I+      + R  PF    + +I  +   +
Sbjct: 173 NADDIAETVFMDLLRGDIPR----LQRCVNIITGSEGALPRSKPFKYTYQREIVMYAYFK 228

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R F++D++
Sbjct: 229 KLDYFSTECIYAPNAYRGHARDFLKDLE 256


>gi|254785358|ref|YP_003072787.1| C32 tRNA thiolase [Teredinibacter turnerae T7901]
 gi|259550665|sp|C5BRQ7|TTCA_TERTT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|237687418|gb|ACR14682.1| conserved hypothetical protein [Teredinibacter turnerae T7901]
          Length = 302

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 84/252 (33%), Gaps = 25/252 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS G+L  L S+       K +  A+++D   +        +V     
Sbjct: 36  GDRVMVCLSGGKDSYGMLDILLSLQRTAPV-KFELVAVNLD-QKQPG---FPEHVLPAYL 90

Query: 78  SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L I + +V                         R   +   A+ I AT I   H  DD
Sbjct: 91  DTLDIEYHIVERDTYSIVKSVVPEGKTTCGLCSRLRRGTLYGFAEKIGATKIALGHHRDD 150

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+++         G   +        D    I RP   C  ED+ +F   R      
Sbjct: 151 IVETLFLNLF----YAGRLKAMPPKLRSDDKRNIIIRPLAYCPEEDLEAFAQARAFPII- 205

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV---AMLIPKYLTV 244
            P N     +  +R  ++  +R  D          F  L+    + +   A+     LT+
Sbjct: 206 -PCNLCGSQENLQRQVIKEMLRGWDKQFPGRVETIFAALQRVSPSQLADNALFNFTDLTL 264

Query: 245 HMRSIIAISQDI 256
              +  AI  D 
Sbjct: 265 DRSAPAAIEDDA 276


>gi|313500192|gb|ADR61558.1| TRNA 2-thiocytidine biosynthesis protein ttcA [Pseudomonas putida
           BIRD-1]
          Length = 274

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  +L  L  +        I F  ++V+    +        +V    
Sbjct: 32  GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPITFEIVAVNMDQKQPG---FPEHVLPAY 85

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L + + +V                   +     R   +   A  I AT +   H  D
Sbjct: 86  LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET ++    + A KGM           D    + RP   C  +DI+++   +     
Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKEFPII 201

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+D+ +        + + +   + N     +         S+
Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258


>gi|310816966|ref|YP_003964930.1| tRNA 2-thiocytidine biosynthesis protein [Ketogulonicigenium
           vulgare Y25]
 gi|308755701|gb|ADO43630.1| tRNA 2-thiocytidine biosynthesis protein [Ketogulonicigenium
           vulgare Y25]
          Length = 291

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 18/192 (9%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +++VR  +     +V     LV +SGG DS  LL  L+ +   R    +   A ++D 
Sbjct: 30  RIVQNVREAIDQYGMIVPGQRWLVCLSGGKDSYTLLAVLNEL-KWRGLLPVDLLACNLD- 87

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113
             +         + +  +++ + H +       +          + A     R   +   
Sbjct: 88  --QGQPNFPATVLPEFLTKMGVPHRIEYQDTYSIVVDKIPQGRTMCALCSRLRRGNLYRI 145

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+    + ++  H  DD LET +M         G   +     +  D +L++ RP     
Sbjct: 146 AREEGCSAVVLGHHRDDILETFFMNLFHG----GRLATMPPKLLNEDGDLFVFRPLAHVA 201

Query: 174 REDIRSFLLQRN 185
             D   F    +
Sbjct: 202 EADCEKFASAMH 213


>gi|261257408|ref|ZP_05949941.1| putative C32 tRNA thiolase [Escherichia coli O157:H7 str. FRIK966]
          Length = 295

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V                   +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|283798640|ref|ZP_06347793.1| ATPase of the PP family protein [Clostridium sp. M62/1]
 gi|291073625|gb|EFE10989.1| ATPase of the PP family protein [Clostridium sp. M62/1]
          Length = 334

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%)

Query: 10  RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           R FV++L          +I V +SGG DSM L   +  +L      +     + +D    
Sbjct: 82  RPFVKALNEYDMIQEGDNIAVCISGGKDSMLLAKCMQEILR-HGKMEFGLHFLVMDPGYN 140

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
              +   R + +    + I  +V                       R   +  +AK +  
Sbjct: 141 PENR---RMIEENARIMGIPITVFESDIFNVVVDVDQSPCYLCARMRRGYLYANAKKLGC 197

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I   H FDD +ET+ M          M       +  ++  + + RP    +  DI++
Sbjct: 198 NKIALGHHFDDVIETILMSMLYGAQVNTM--MPKLHSTNFE-GMELIRPLYLVKEADIQA 254

Query: 180 FLLQRNISW 188
           +     + +
Sbjct: 255 WRDFNQLRF 263


>gi|301384487|ref|ZP_07232905.1| hypothetical protein PsyrptM_17700 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060521|ref|ZP_07252062.1| hypothetical protein PsyrptK_11080 [Pseudomonas syringae pv. tomato
           K40]
 gi|331016777|gb|EGH96833.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 274

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 90/273 (32%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  LL  L           I+F  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L + + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + A K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+D+ L        + + +   + N     
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQ 246

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +        R +   SQ  L ID T     + V
Sbjct: 247 LAD------RKLFDFSQ--LRIDETAASRFVNV 271


>gi|291561231|emb|CBL40030.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [butyrate-producing bacterium SS3/4]
          Length = 412

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/183 (21%), Positives = 66/183 (36%), Gaps = 27/183 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAKDEVRYVSDV 76
              I V +SGG DSM +   L  +      GK+KF  +   ++    E   +    + + 
Sbjct: 172 GDKIAVCISGGKDSMLMAKLLQELQ---LHGKVKFDLVFLVMNPGYNE--DNW-NIILNN 225

Query: 77  CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              L I  +V         +             R   +  HAK +    I   H FDD +
Sbjct: 226 AKLLGIPINVFESDIFNIVADVDKSPCYLCARMRRGYLYSHAKELGCNKIALGHHFDDVI 285

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLWISRPFLRCRREDIRSFLLQRNI 186
           ET  M         GM  SG  +T++  L       + + RP    R  DI+++    ++
Sbjct: 286 ETTLM---------GMLYSGKVETMMPKLHSKNFEGMELIRPMYMVREADIKAWRDYNHL 336

Query: 187 SWC 189
            + 
Sbjct: 337 HFI 339


>gi|24373901|ref|NP_717944.1| hypothetical protein SO_2354 [Shewanella oneidensis MR-1]
 gi|81461573|sp|Q8EEM4|TTCA_SHEON RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|24348323|gb|AAN55388.1|AE015676_10 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 310

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 20/194 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++   R+  + +  A+++D   +    ++V         L + + 
Sbjct: 44  LSGGKDSYAMLDILLNLQ-QRAPVQFEIIAVNLD-QKQPGFPEDVLPA--YLDSLNVPYH 99

Query: 86  VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++                   +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 100 ILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFLN 159

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD 197
                   G  +  M   +L D     + RP   CR +D+  +   +       P N   
Sbjct: 160 MF-----FGGKMKAMPPKLLSDDGANVVIRPLAYCREKDLEEYAELKKFPII--PCNLCG 212

Query: 198 RFERVRVRRFVRDI 211
             +    R+ V+D+
Sbjct: 213 S-QENLKRQAVKDM 225


>gi|260880923|ref|ZP_05403147.2| PP-loop family protein [Mitsuokella multacida DSM 20544]
 gi|260849928|gb|EEX69935.1| PP-loop family protein [Mitsuokella multacida DSM 20544]
          Length = 401

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 14/191 (7%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +E+V  F   LV P   I V +SGG DSM +      +     F   +   + +D   
Sbjct: 146 KFVEAVCKF--ELVRPGDKIAVCISGGKDSMLMAKLFQDLKRHNKFP-FELVFLCMDPGY 202

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTIN 118
            E  +   R + +    L +  +  S          +        + R   +   A+ + 
Sbjct: 203 NEMNR---RIIEENAKLLHVPLTFFSTDIFESVFHVEESPCYLCAKMRRGYLYRKARALG 259

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              I   H FDD +ET  M      A + M       +      + + RP       DI+
Sbjct: 260 CNKIALGHHFDDVIETNLMSMLYSGAIRTMMPKVKSTSCP---GMELIRPLYYIHEADIK 316

Query: 179 SFLLQRNISWC 189
            +     + + 
Sbjct: 317 RWRDDNGLYFI 327


>gi|323172285|gb|EFZ57922.1| PP-loop family protein [Escherichia coli LT-68]
          Length = 311

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP    R +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYSREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|17544894|ref|NP_518296.1| hypothetical protein RSc0175 [Ralstonia solanacearum GMI1000]
 gi|81506945|sp|Q8Y306|TTCA_RALSO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|17427183|emb|CAD13703.1| putative cog0037, predicted atpase of the pp-loop superfamily
           protein [Ralstonia solanacearum GMI1000]
          Length = 312

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 26/249 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR--YVSDVCSR 79
           +LV +SGG DS  +L  L ++   R+    K  A+++D   +    ++V   Y+  V   
Sbjct: 34  VLVCLSGGKDSYTMLSVLMALQK-RAPIDFKLIAMNLD-QKQPGFPEDVLPGYLKKV--- 88

Query: 80  LRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             + + +V                   +     R  +I   AK + A  I   H  DD +
Sbjct: 89  -GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIV 147

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCED 191
            T ++         G  +  M   +  D    I  RP   C  ++I ++           
Sbjct: 148 NTFFLNMF-----FGGKMKAMPPKLATDNGDHIVIRPLAYCAEKEIAAYARAMEFPII-- 200

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N     +  +R +V+  + + +  A       F  L+  V + +A             
Sbjct: 201 PCNLCGSQENLQRKKVKEMLLEWERQAPGRIDNIFSALQNVVPSHLADTDLFDFNGLTTG 260

Query: 249 IIAISQDIL 257
           +  I ++ L
Sbjct: 261 LAKIGEEAL 269


>gi|205830654|sp|Q4K882|TTCA_PSEF5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 274

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 23/217 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFEIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M    + D    D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFYNGSLKAMPPKLLAD----DGRNVVIRPLAYCSEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           +++   +       P N     +    R+ V+++   
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEMLQE 223


>gi|70731809|ref|YP_261551.1| C32 tRNA thiolase [Pseudomonas fluorescens Pf-5]
 gi|68346108|gb|AAY93714.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 288

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 23/217 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 35  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLLHLQK---VAPIKFEIVAVNMDQKQPG 90

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 91  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 147

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M    + D    D    + RP   C  +DI
Sbjct: 148 GATKMALGHHRDDIVETFFLNMFYNGSLKAMPPKLLAD----DGRNVVIRPLAYCSEKDI 203

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           +++   +       P N     +    R+ V+++   
Sbjct: 204 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEMLQE 237


>gi|169831320|ref|YP_001717302.1| PP-loop domain-containing protein [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638164|gb|ACA59670.1| PP-loop domain protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 297

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 22/213 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL  +E      + L     +LVAVSGG DS+ +   L  +             + VD  
Sbjct: 30  FLRQVEKTIRRYQMLQPGERVLVAVSGGKDSLTVADVLDRL-------GYAVRGVHVDLG 82

Query: 62  LRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---------YALI 110
           + +   + +      +  +   +   + S K    ++      R  R           ++
Sbjct: 83  IDDNGFSSESTALCREFFTARGLPLEIYSLKERFGRSIKDVGRRFNRFCSICGMTKRHVM 142

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +  A       + T H  DD    ++    R          G+             +P  
Sbjct: 143 NARAVEQGLDALATGHNLDDLSAALFANLMRWDRRYLA--KGLPSLPPEGGFCRKIKPLA 200

Query: 171 RCRREDIRSFLLQRNISWC--EDPSNTDDRFER 201
               ++I ++   R+I       P + + +F+R
Sbjct: 201 LLSEKEIATYAAVRDIRMVTATCPYSREAKFKR 233


>gi|330877101|gb|EGH11250.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 274

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 91/273 (33%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  LL  L           I+F  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L + + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + A K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+D+ L        + + +   + N     
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQ 246

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +        R++   SQ  L ID T     + V
Sbjct: 247 LAD------RNLFDFSQ--LRIDETAASRFVNV 271


>gi|310767700|gb|ADP12650.1| C32 tRNA thiolase [Erwinia sp. Ejp617]
          Length = 310

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 21/268 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   ++  
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPVS-FSLVAVNLD---QKQP 82

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINA 119
                 + +   +L + +++V+                  +     R  ++   A  +  
Sbjct: 83  GFPAHILPEYLEQLGVEYNIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGC 142

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           + I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+ 
Sbjct: 143 SKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGQHIVIRPLAYCREKDIQR 198

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           F + R       P N        +R  +   +RD D          F  ++  V + +A 
Sbjct: 199 FAIARQYPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETLFTAMQNVVPSHLAD 256

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264
                          +    L  D   L
Sbjct: 257 ANLFDFKHIRHGADVVDGGDLAFDRETL 284


>gi|300716862|ref|YP_003741665.1| ATPase [Erwinia billingiae Eb661]
 gi|299062698|emb|CAX59818.1| putative ATPase [Erwinia billingiae Eb661]
          Length = 297

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 23/234 (9%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++   +    I F  ++V+  L +       ++
Sbjct: 32  NMIEENDVVMACMSGGKDSFAMLDILLNL---KKVAPIHFDVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
                 +L I + +V                         R   +   A+ I AT I   
Sbjct: 87  LPAYFEKLDIPYYIVDKDTYSVVREKIPEGKTTCGLCSRLRRGTLYSFAERIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHMDDIVETLFLNIFHGARMKAM----PPKLRSDDGRNVVIRPLAYCREKDLIEYSEHKA 202

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
                 P N     +  +R  ++  + D D          F+ ++    + +A 
Sbjct: 203 FPII--PCNLCGSQENLQRQAIKSMLTDWDKKEPGRVESVFKSIQNVSPSQLAD 254


>gi|51596578|ref|YP_070769.1| C32 tRNA thiolase [Yersinia pseudotuberculosis IP 32953]
 gi|186895636|ref|YP_001872748.1| C32 tRNA thiolase [Yersinia pseudotuberculosis PB1/+]
 gi|81639280|sp|Q66A78|TTCA_YERPS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830673|sp|B2K5E0|TTCA_YERPB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|51589860|emb|CAH21492.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186698662|gb|ACC89291.1| PP-loop domain protein [Yersinia pseudotuberculosis PB1/+]
          Length = 313

 Score = 87.7 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L S+            A+++D   +    +++        
Sbjct: 39  GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFSLIAVNLD-QKQPGFPEDILPA--YLD 94

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 95  KQGVEYKIVEENTYGIVKEIIPDGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAVAREYPII-- 208

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +              
Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKSITHD 268

Query: 249 IIAISQDILNIDSTLL 264
              I    L  D   L
Sbjct: 269 SDIIDGGDLAFDREAL 284


>gi|206578688|ref|YP_002238857.1| PP-loop family protein [Klebsiella pneumoniae 342]
 gi|288935785|ref|YP_003439844.1| PP-loop domain protein [Klebsiella variicola At-22]
 gi|290509811|ref|ZP_06549182.1| C32 tRNA thiolase [Klebsiella sp. 1_1_55]
 gi|254790132|sp|B5XRN3|TTCA_KLEP3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|206567746|gb|ACI09522.1| PP-loop family protein [Klebsiella pneumoniae 342]
 gi|288890494|gb|ADC58812.1| PP-loop domain protein [Klebsiella variicola At-22]
 gi|289779205|gb|EFD87202.1| C32 tRNA thiolase [Klebsiella sp. 1_1_55]
          Length = 311

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + ++
Sbjct: 198 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            +              +    L  D   +
Sbjct: 256 DVNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|163745585|ref|ZP_02152945.1| PP-loop [Oceanibulbus indolifex HEL-45]
 gi|161382403|gb|EDQ06812.1| PP-loop [Oceanibulbus indolifex HEL-45]
          Length = 284

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 15/176 (8%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                 LV +SGG DS  LL  LH +   R    +   A ++D   +         + + 
Sbjct: 49  APKPKWLVCLSGGKDSYTLLAVLHELQ-WRGLLPVDLLACNLD---QGQPNFPATVLPEF 104

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             ++ + H +       +            A     R   +   A+    + ++  H  D
Sbjct: 105 LEKMGVPHRIEYQDTYSIVMDKIPAGRTFCALCSRLRRGNLYRIAREEGCSAVVLGHHRD 164

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           D LET +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 165 DILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAERDCERFATAMN 216


>gi|152969928|ref|YP_001335037.1| C32 tRNA thiolase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|205830598|sp|A6T886|TTCA_KLEP7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|150954777|gb|ABR76807.1| hypothetical protein KPN_01375 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 311

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 23/267 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + ++
Sbjct: 198 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDST 262
            +              +    L  D  
Sbjct: 256 DVNLFDFKGITHGSEVVDGGDLAFDRE 282


>gi|39973603|ref|XP_368192.1| hypothetical protein MGG_01052 [Magnaporthe oryzae 70-15]
 gi|145017992|gb|EDK02271.1| hypothetical protein MGG_01052 [Magnaporthe oryzae 70-15]
          Length = 833

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 63/185 (34%), Gaps = 39/185 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRY 72
           P  + +A+SGG DSM +      V              ++F  I VDH  R  +  E + 
Sbjct: 92  PIPVALAISGGVDSMAMAWLCAEVRRLDPTMRVADHRVLRFMPIIVDHDYRRHSYREAKT 151

Query: 73  VSDVC-SRLRIAHSVVSW------------------------------KNSKPQ--TGLM 99
           V D    RL +   +                                 K+ +PQ      
Sbjct: 152 VGDFLRERLNMRPIIARIMWDKLDRDRVLNHGEPSGRSKGASQDDSRLKSIRPQDIPNFE 211

Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
             ARE RY L ++      +  +  AH  DDQ E + MR    +  +G+      + + +
Sbjct: 212 TVAREQRYRLFAQKMVHERSMSLFLAHHEDDQYEWLLMRLMDGHGPRGLVGIPAANQLPH 271

Query: 160 DLNLW 164
             ++ 
Sbjct: 272 TQDIH 276



 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 55/161 (34%), Gaps = 12/161 (7%)

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRR 206
            G   +    + D    + RP L   ++ I +  ++  + W ED +N D     R  +R 
Sbjct: 348 RGAPELEPCRVEDGGTMLYRPMLEFSKDRIIATCVENGVPWFEDSTNKDMTLTPRNAIRH 407

Query: 207 FVRDIDLH---------ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
            V+   +          A+  ++++  +L+ +  + +   +  Y        I +    L
Sbjct: 408 MVKHHTMPVALQKPAVLAMSNRIRRRLELQKQEADRIFNRLVFYEFHPNVGSIVVEFPNL 467

Query: 258 NIDSTLLFYLL--RVSAAICGGQISLPGYRSMERVMLFLKS 296
                   + +       I     ++   ++  R++  +  
Sbjct: 468 RRPGPRRRHSIYTTRWRQIALDNKTIAAAQAFRRLLRIVSP 508


>gi|28868890|ref|NP_791509.1| hypothetical protein PSPTO_1684 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|81731877|sp|Q885Z7|TTCA_PSESM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|28852129|gb|AAO55204.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 274

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 90/273 (32%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  LL  L           I+F  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L + + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGVEYHIVEKDTHSVVKELIPEGKTTCSLCSRLRRGTLYTFADQI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + A K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+D+ L        + + +   + N     
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQ 246

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +        R +   SQ  L ID T     + V
Sbjct: 247 LAD------RKLFDFSQ--LRIDETAASRFVNV 271


>gi|332796633|ref|YP_004458133.1| PP-loop family protein [Acidianus hospitalis W1]
 gi|332694368|gb|AEE93835.1| PP-loop family protein [Acidianus hospitalis W1]
          Length = 320

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 78/230 (33%), Gaps = 27/230 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-ISVDH 60
           F + +E        L     + +AVSGG DS  LL  +  +        I  +  + +D 
Sbjct: 36  FENRVERTVRKYNMLEGTRKLAIAVSGGKDSTTLLHVMTKIAEKEGIEIIGITIDLGIDM 95

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALI 110
              + +   V +       L + + +V  K     T   A  +  R            ++
Sbjct: 96  GK-KYSAKSVEFAIKNYEMLGVKYRIVKLKEEYGFTIDEAKVKIRRPVCSTCGLTKRYIL 154

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRP 168
            + AK  +A  + T H  +D  + V              L      +    N +I   +P
Sbjct: 155 EKVAKEESADTLATGHNLNDVAQYVLTGYYNGDILSLARL----RPVSPAENGYIKKIKP 210

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV------RVRRFVRDID 212
                 ++I ++ L + I +  D         RV      ++RR + +++
Sbjct: 211 LFLSPEKEIMTYALVKGIPFIYDSC---PHTFRVGGETQDKIRRTIEEME 257


>gi|324113197|gb|EGC07172.1| C32 tRNA thiolase [Escherichia fergusonii B253]
 gi|325497404|gb|EGC95263.1| C32 tRNA thiolase [Escherichia fergusonii ECD227]
          Length = 311

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 87/257 (33%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        ++  +  
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG---FPEHILPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  EKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI+ F   +      
Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRFADAKAFPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F  ++  V + +             
Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGIKH 267

Query: 248 SIIAISQDILNIDSTLL 264
               I+   L  D   L
Sbjct: 268 GSEVINGGDLAFDREEL 284


>gi|71737240|ref|YP_275868.1| C32 tRNA thiolase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485919|ref|ZP_05639960.1| hypothetical protein PsyrptA_21801 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289627103|ref|ZP_06460057.1| hypothetical protein PsyrpaN_18494 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648114|ref|ZP_06479457.1| hypothetical protein Psyrpa2_10249 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487955|ref|ZP_07005994.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|123635491|sp|Q48FG8|TTCA_PSE14 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|71557793|gb|AAZ37004.1| conserved hypothetical protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157506|gb|EFH98587.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323411|gb|EFW79499.1| C32 tRNA thiolase [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327607|gb|EFW83619.1| C32 tRNA thiolase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330866036|gb|EGH00745.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330876302|gb|EGH10451.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330889410|gb|EGH22071.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330986729|gb|EGH84832.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 274

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+D+ +         ++        ++   
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLID--------WERKTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID T     + V
Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271


>gi|148549282|ref|YP_001269384.1| C32 tRNA thiolase [Pseudomonas putida F1]
 gi|205830614|sp|A5W7U0|TTCA_PSEP1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|148513340|gb|ABQ80200.1| PP-loop domain protein [Pseudomonas putida F1]
          Length = 274

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  +L  L  +        I F  ++V+    +        +V    
Sbjct: 32  GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPITFEIVAVNMDQKQPG---FPEHVLPAY 85

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L + + +V                   +     R   +   A  I AT +   H  D
Sbjct: 86  LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET ++    + A KGM           D    + RP   C  +DI+++   +     
Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKAFPII 201

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+D+ +        + + +   + N     +         S+
Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258


>gi|238749377|ref|ZP_04610882.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia rohdei ATCC
           43380]
 gi|238712032|gb|EEQ04245.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia rohdei ATCC
           43380]
          Length = 313

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 83/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L S+            A+++D   +    +++        
Sbjct: 39  GDRVMVCLSGGKDSYTMLDILQSLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 94

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 95  KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTASELGATKIALGHHRDDI 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVAREYPII-- 208

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +              
Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKSITHD 268

Query: 249 IIAISQDILNIDSTLL 264
              +    L  D   L
Sbjct: 269 SDIVDGGDLAFDREEL 284


>gi|238762544|ref|ZP_04623514.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia
           kristensenii ATCC 33638]
 gi|238699189|gb|EEP91936.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia
           kristensenii ATCC 33638]
          Length = 318

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++            A+++D   +    +++        
Sbjct: 44  GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 99

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 100 KQGVEYKIVEENTYGIVKDIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 159

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 160 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAIAREYPII-- 213

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +             +
Sbjct: 214 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHQLFDFKSITHN 273

Query: 249 IIAISQDILNIDSTLL 264
              +    L  D   L
Sbjct: 274 SEIVDGGDLAFDREEL 289


>gi|330811221|ref|YP_004355683.1| tRNA 2-thiocytidine biosynthesis protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379329|gb|AEA70679.1| tRNA 2-thiocytidine biosynthesis protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 274

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 23/217 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  LL  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEDGDKVMVCLSGGKDSYTLLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L + + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLESLGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++         G   +        D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMF----YNGSLKAMPPKLRADDGRNVVIRPLAYCSEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           +++   +       P N     +    R+ V+++   
Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEMLQE 223


>gi|306813631|ref|ZP_07447812.1| C32 tRNA thiolase [Escherichia coli NC101]
 gi|305852905|gb|EFM53350.1| C32 tRNA thiolase [Escherichia coli NC101]
          Length = 311

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +    L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+TV++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTVFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|242239175|ref|YP_002987356.1| C32 tRNA thiolase [Dickeya dadantii Ech703]
 gi|242131232|gb|ACS85534.1| PP-loop domain protein [Dickeya dadantii Ech703]
          Length = 313

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 90/275 (32%), Gaps = 35/275 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     ++V +SGG DS  +L  L ++        I FS I+V+       
Sbjct: 28  EAIADF-SMIEDGDRVMVCLSGGKDSYTMLEILRNLQQS---APISFSLIAVN------- 76

Query: 67  KDEVR------YVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISE 112
             + +      +V  +    + I + +V                   +     R  ++  
Sbjct: 77  -LDQKQPGFPGHVLPNYLDSIGIEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYR 135

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + AT I   H  DD L+T+++        KGM    M D    D    + RP   C
Sbjct: 136 TATELGATKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYC 191

Query: 173 RREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           R +DI  F   R       P N        +R  ++  +RD D          F  ++  
Sbjct: 192 REKDIERFAEARQFPII--PCNLCGSQPNLQRQVIKDMLRDWDKRYPGRIETMFSAMQSV 249

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
           V + +                 +    L  D   L
Sbjct: 250 VPSHLCDTNLFDFKSIRHGGEVVDGGDLAFDREEL 284


>gi|302131995|ref|ZP_07257985.1| hypothetical protein PsyrptN_11424 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 253

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 85/261 (32%), Gaps = 30/261 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  LL  L           I+F  ++V+    +        +V    
Sbjct: 11  GDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG---FPEHVLPAY 64

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L + + +V                   +     R   +   A  I AT +   H  D
Sbjct: 65  LKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQIGATKMALGHHRD 124

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET ++    + A K M           D    + RP   C  +DI+++   +     
Sbjct: 125 DIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDIQAYSDLKQFPII 180

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+D+ L        + + +   + N     +        R +
Sbjct: 181 --PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQLAD------RKL 231

Query: 250 IAISQDILNIDSTLLFYLLRV 270
              SQ  L ID T     + V
Sbjct: 232 FDFSQ--LRIDETAASRFVNV 250


>gi|239996110|ref|ZP_04716634.1| ATPase of the PP-loop superfamily protein [Alteromonas macleodii
           ATCC 27126]
          Length = 317

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 21/185 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
             ++V +SGG DS  +L  L  +   +    I F  ++V+  L +       ++  +   
Sbjct: 49  DKVMVCLSGGKDSYTMLDILLFL---KKIAPIHFDIVAVN--LDQKQPGFPEHILPEYLE 103

Query: 79  RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + +V        K+  P+     +     R  ++   AK + AT I   H  DD 
Sbjct: 104 SIGVDYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTAKELGATKIALGHHRDDM 163

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCE 190
           LET ++            L  M   ++ D    I  RP   C  +DI  +          
Sbjct: 164 LETFFLNMFHGGK-----LKSMPPKLVSDNGEHIVIRPLAYCTEKDIEKYSQAAEFPII- 217

Query: 191 DPSNT 195
            P N 
Sbjct: 218 -PCNL 221


>gi|328543191|ref|YP_004303300.1| ATPase, PP superfamily [polymorphum gilvum SL003B-26A1]
 gi|326412937|gb|ADZ70000.1| ATPase, PP superfamily [Polymorphum gilvum SL003B-26A1]
          Length = 322

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 23/228 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            R+  YP   LV +SGG DS  LL  L  +   R    +   A ++D   +     +V  
Sbjct: 58  ARADGYPPKWLVCLSGGKDSYTLLAVLMDL-KWRGLLPVDLIACNLD-QAQPGFPADVLP 115

Query: 73  VSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
                 +  I H +V                   +     R  ++   A+      I+  
Sbjct: 116 A--FFEKNAIKHVIVREDTYSIVTDKIPAHKTYCSLCSRLRRGILYRIAREQGCEAIVLG 173

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  +D LET +M         G   S     +  D +L++ RP   C   DI  F     
Sbjct: 174 HHREDILETFFMNLFHG----GRLASMPPKLLNDDGDLFVLRPLSYCSENDIARFARAMA 229

Query: 186 ISWCEDPSNT---DDRFERVRVRRFVRDIDLHA---LYLKMKKFQDLR 227
                 P N     D  +R  ++R ++  +  A   L +  +     R
Sbjct: 230 FPII--PCNLCGSQDGLQREEIKRMLQAWEQQAPGRLGVMARALAHTR 275


>gi|238894461|ref|YP_002919195.1| C32 tRNA thiolase [Klebsiella pneumoniae NTUH-K2044]
 gi|238546777|dbj|BAH63128.1| hypothetical protein KP1_2451 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 311

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 23/267 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + ++
Sbjct: 198 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDST 262
            +              +    L  D  
Sbjct: 256 DVNLFDFKGITHGSEVVDGGDLAFDRE 282


>gi|170768722|ref|ZP_02903175.1| protein YdaO [Escherichia albertii TW07627]
 gi|170122270|gb|EDS91201.1| protein YdaO [Escherichia albertii TW07627]
          Length = 311

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        +V     
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPIS-FSLVAVNLD-QKQPG---FPEHVLPKYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  EKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI+ F   +      
Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQRFADAKAFPII- 208

Query: 191 DPSNT 195
            P N 
Sbjct: 209 -PCNL 212


>gi|156933849|ref|YP_001437764.1| C32 tRNA thiolase [Cronobacter sakazakii ATCC BAA-894]
 gi|205830588|sp|A7MLI7|TTCA_ENTS8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|156532103|gb|ABU76929.1| hypothetical protein ESA_01675 [Cronobacter sakazakii ATCC BAA-894]
          Length = 310

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 90/281 (32%), Gaps = 22/281 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        ++  +  
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHILPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
           S L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  SSLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F   +      
Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFSQAKGFPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F  ++  V + +             
Sbjct: 209 -PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTELFDFKGIHH 267

Query: 248 SIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSME 288
               ++   L  D   +  +             +     +E
Sbjct: 268 GSEVVNGGDLAFDREEIPMMPAGWTPEDDAAPPMQRLDVLE 308


>gi|330014984|ref|ZP_08308019.1| PP-loop family protein [Klebsiella sp. MS 92-3]
 gi|328532464|gb|EGF59261.1| PP-loop family protein [Klebsiella sp. MS 92-3]
          Length = 310

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 23/267 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 43  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 98

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 99  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 156

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 157 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 212

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + ++
Sbjct: 213 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 270

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDST 262
            +              +    L  D  
Sbjct: 271 DVNLFDFKGITHGSEVVDGGDLAFDRE 297


>gi|291279839|ref|YP_003496674.1| hypothetical protein DEFDS_1458 [Deferribacter desulfuricans SSM1]
 gi|290754541|dbj|BAI80918.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 223

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/223 (19%), Positives = 70/223 (31%), Gaps = 42/223 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAH--------ILVAVSGGSDSMGLLIALHSVLSDRSFGKIK 52
           M    IE  +  + SL+            ++V VSGG DS  L   L     + SF   K
Sbjct: 1   MMYKKIE--KRLIGSLLKTHQKYPFLGEDLIVGVSGGIDSAVLYHLLSKFYENNSFAG-K 57

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALIS 111
              + V   +                +  +  ++ V  K               R   I 
Sbjct: 58  IYPVHV--GISGD------------LKTTLPDAINVEVKEDVKFPIDCYFCSRLRRHYIF 103

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + AK +    ++ AH  DD  E                L  +     Y   + + RPF  
Sbjct: 104 QFAKEVGCKYVLFAHHADDFAERFLWNIFYQKK-----LESLPVKRDYFGEVTVLRPFFY 158

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFE---RVRVRRFVRDI 211
             + DI  +  +  I        TD+ ++   + RV  FV  +
Sbjct: 159 VFKRDIEKYAKKYGI--------TDNEYKCLVKNRVTGFVEKV 193


>gi|325980894|ref|YP_004293296.1| PP-loop domain-containing protein [Nitrosomonas sp. AL212]
 gi|325530413|gb|ADZ25134.1| PP-loop domain protein [Nitrosomonas sp. AL212]
          Length = 302

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 101/281 (35%), Gaps = 28/281 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L ++    S    +  A+++D   +    ++V    +  
Sbjct: 32  AGDRIMVCLSGGKDSYALLDILRNLQ-IHSPVNFELIAVNLD-QKQPGFPEQVLP--NYL 87

Query: 78  SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +++ +   +V         +         +     R  ++   A  + AT I   H  DD
Sbjct: 88  TQIGMPFQIVEQDTYSVVKRVIAEGKTTCSLCSRLRRGVLYRVAGELGATKIALGHHRDD 147

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  L  M   ++ D    I  RP   C+ +D+ ++    +    
Sbjct: 148 ILETLFLNMF-----YGGKLKAMPPKLVSDNGRHIVIRPLAYCKEKDLAAYAEISDFPII 202

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     ++   R+ ++++          + + +   + N     +      +  S+
Sbjct: 203 --PCNLCGS-QKNLQRQAIKEMMQQWDKKFPGRLETMFRSIQNIQLSHLADTSHYNFVSL 259

Query: 250 IAISQDILNIDSTL--------LFYLLRVSAAICGGQISLP 282
            A  Q   N D+          +  +L + A    G+  +P
Sbjct: 260 QAQDQPFENGDTAFDEETFEPNIEEMLALGAEEATGRPLVP 300


>gi|330966571|gb|EGH66831.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 274

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 91/273 (33%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  LL  L           I+F  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTLLDVLMHFQK---VAPIRFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L + + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPRYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + A K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+D+ L        + + +   + N     
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQ 246

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +        R++   SQ  L ID T     + V
Sbjct: 247 LAD------RNLFDFSQ--LRIDETAASRFVNV 271


>gi|312961654|ref|ZP_07776152.1| hypothetical protein PFWH6_3573 [Pseudomonas fluorescens WH6]
 gi|311283913|gb|EFQ62496.1| hypothetical protein PFWH6_3573 [Pseudomonas fluorescens WH6]
          Length = 292

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 23/252 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  LL  L  +        I+F  ++V+    +  
Sbjct: 39  EAVADF-NMIEDGDKVMVCLSGGKDSYTLLDVLLHLQK---VAPIQFEIVAVNMDQKQPG 94

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L + + +V                   +     R   +   A  I
Sbjct: 95  ---FPEHVLPAYLKALGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 151

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 152 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCNEKDI 207

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+++ L        + + +   + N +   
Sbjct: 208 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKEMLLDWERKTPGRTESIFRSLQNVIPSQ 264

Query: 238 IPKYLTVHMRSI 249
           +         S+
Sbjct: 265 LADRNLFDFTSL 276


>gi|189426525|ref|YP_001953702.1| C32 tRNA thiolase [Geobacter lovleyi SZ]
 gi|189422784|gb|ACD97182.1| PP-loop domain protein [Geobacter lovleyi SZ]
          Length = 258

 Score = 87.3 bits (215), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 84/215 (39%), Gaps = 14/215 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVC 77
              I V +SGG DS+ LL+ L  +   R+    +   +++D             +V+D+ 
Sbjct: 32  GDRICVGISGGKDSLLLLMLLVEMQR-RAPINYQLVPVTIDAGFPGFNTTTIQNFVADLG 90

Query: 78  SRLRIA---HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             L I    H+ +     +P +   +     +   +   A+ +   L+   H  DD +ET
Sbjct: 91  LELSIEQTGHASLITTKLRPGSSYCSFCARLKRGALYGAARRLGCNLLALGHHRDDFIET 150

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           + +        K M    +CDT     ++ + RP +    EDI + + Q  I+      N
Sbjct: 151 LLLNQFFIGTLKAMAAKTVCDT----GDITVIRPLVYLAEEDIITTVRQAGITTV--SCN 204

Query: 195 ---TDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
               D   +R R+++ +  ++     +K      L
Sbjct: 205 CPVADADQQRQRMKQLLHRLEQEIPQIKNSLLAAL 239


>gi|321467456|gb|EFX78446.1| hypothetical protein DAPPUDRAFT_105239 [Daphnia pulex]
          Length = 679

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 80/225 (35%), Gaps = 35/225 (15%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCLR 63
           +E++  + + +     +L+ VSGG DS+ LL  L           I     AI+VD    
Sbjct: 428 LEALLRY-KMISNGDRVLICVSGGKDSLSLLHTLRQYQKQSKGFGISFDIGAITVD---- 482

Query: 64  ETAKDEVRYVSD---------VCSRLRIAHSVVSWKNSKPQT--GLMAAAREARYALISE 112
             +   + +++          +   L+   ++     +   +        R      I  
Sbjct: 483 PGSSS-LAFLTSMSGNVLNILLERALQTPLTIDQMCVNIHHSYSNNSLGGR------IYA 535

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+     +I      DD  E+  M +  +   +    +        + +L I RPF+  
Sbjct: 536 TARNHGFNVIALGQHLDDLAESFLMSTFHNGRLR----TMKAAYANRERDLKIIRPFVYV 591

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF----ERVRVRRFVRDIDL 213
           R +++R F     +     P N    F    ER R+++ +   +L
Sbjct: 592 REKELRQFASDTRLPVI--PENCPACFEAPKERHRIKQLLAQQEL 634


>gi|320169682|gb|EFW46581.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 879

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLW--ISRPFL 170
           AK++ + ++  AH  DD+LE++ MR  R     G+ G     + +  D + +  I RP L
Sbjct: 387 AKSMFSPVLAVAHHADDRLESMIMRFSRASQMDGLRGPMAWYNRLSPDNSSFFSIVRPLL 446

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
              +  + +      + +  DPSN D  F R  VR  +R +
Sbjct: 447 PFPKARLVATCEAMGVPYVRDPSNDDLAFRRNSVRFALRAL 487



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFG 49
             +HI +AVSGG DSM L+  LH  +     G
Sbjct: 105 PKSHIAIAVSGGPDSMALVALLHRYMMTSRLG 136



 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 49  GKIKFSAISVDHCLRETAKDEVRYVSDVCS-RLRI---AHSVVSWKNSKPQTGLMAAARE 104
                 A +VDH  R  + DEV +V  +   R  I      +            +  AR+
Sbjct: 197 PPRNLLAFTVDHGFRPESADEVVFVKKLLERRFGIQTYPLKITWPDGLPSGPSKLGDARD 256

Query: 105 ARYALISEHAKTINATLIMTAHTF 128
            RY ++++    +  TL   A T 
Sbjct: 257 QRYQMMADELVKMRQTLETAAQTA 280


>gi|229591221|ref|YP_002873340.1| C32 tRNA thiolase [Pseudomonas fluorescens SBW25]
 gi|259550641|sp|C3JY43|TTCA_PSEFS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|229363087|emb|CAY50081.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 274

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 84/252 (33%), Gaps = 23/252 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  LL  L  +        I+F  ++V+    +  
Sbjct: 21  EAVADF-NMIEDGDKVMVCLSGGKDSYTLLDVLLHLQK---VAPIQFEIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 YV       L + + +V                   +     R   +   A  I
Sbjct: 77  ---FPEYVLPAYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCNEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+++ L        + + +   + N +   
Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEMLLDWERKTPGRTESIFRSLQNVIPSQ 246

Query: 238 IPKYLTVHMRSI 249
           +         S+
Sbjct: 247 LADRNLFDFASL 258


>gi|146329374|ref|YP_001209974.1| adenine nucleotide alpha hydrolase ATP-binding family protein
           [Dichelobacter nodosus VCS1703A]
 gi|205830579|sp|A5EXQ4|TTCA_DICNV RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|146232844|gb|ABQ13822.1| adenine nucleotide alpha hydrolase ATP-binding family protein
           [Dichelobacter nodosus VCS1703A]
          Length = 267

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +     I+V +SGG DS  LL  L ++        I F  I+V+  L +   +    V
Sbjct: 24  QMIADGDRIMVCLSGGKDSYALLDILLALQKS---APIHFEIIAVN--LNQKFPNFPERV 78

Query: 74  S-DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTA 125
             D   +L + + ++     +           + +     R  ++  +A+    T I   
Sbjct: 79  LPDYLEKLGVKYDIIEHDTYQVVMEKIPAGKTMCSLCSRLRRGILYRYAEEHGITKIALG 138

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQR 184
           H   D +ET ++            L  M   +L D    I  RP + C  +DI  +   +
Sbjct: 139 HHKIDVIETFFLNLFFTGR-----LKAMPAKLLSDNKKQIVIRPLVYCDEKDIVKYAKLK 193

Query: 185 NISWCEDPSNT 195
                  PSN 
Sbjct: 194 AFPII--PSNL 202


>gi|320100612|ref|YP_004176204.1| PP-loop domain-containing protein [Desulfurococcus mucosus DSM
           2162]
 gi|319752964|gb|ADV64722.1| PP-loop domain protein [Desulfurococcus mucosus DSM 2162]
          Length = 320

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 15/170 (8%)

Query: 31  DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90
           DSM LL    +       G  K   + V+  +   +      V + C  L +  +V+  +
Sbjct: 60  DSMSLLAI--TAKRRVEMGVEKIVGVHVNLGIEGYSDLAEAAVREYCGSLGVECTVLRLR 117

Query: 91  NSKPQTGLMAAAREAR----------YALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
           +         A+R  R            LI+ +A    A+ + T H  DD    +     
Sbjct: 118 DILGVGLPELASRAGRPPCSVCGLVKRYLITAYAVATGASAVFTGHHLDDAARYMLKDLY 177

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
               +   GL          +    ++P +   ++DI ++     +   E
Sbjct: 178 VGDFKSLAGLKPAVREPGLPVK---AKPLITLGKKDIEAYAELAGVPHLE 224


>gi|161613875|ref|YP_001587840.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|205830623|sp|A9MXN4|TTCA_SALPB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|161363239|gb|ABX67007.1| hypothetical protein SPAB_01611 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 311

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|331013475|gb|EGH93531.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 274

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRGDDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+D+ +         ++        ++   
Sbjct: 190 QAYSDLKQFPII--PCNLCGS-QENLQRQVVKDMLID--------WERKTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID T     + V
Sbjct: 239 LQNVQPSQLADRNLFDFSNLRIDETAASRFVNV 271


>gi|315650358|ref|ZP_07903430.1| PP-loop family protein [Eubacterium saburreum DSM 3986]
 gi|315487469|gb|EFU77779.1| PP-loop family protein [Eubacterium saburreum DSM 3986]
          Length = 381

 Score = 86.9 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 77/234 (32%), Gaps = 29/234 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDV 76
              I V +SGG DSM +      +L            + ++        D++ Y  + D 
Sbjct: 143 GDKIAVCISGGKDSMLMAKLFQELLR-HGKKNFTLVFLVMN----PG-YDDINYQTILDN 196

Query: 77  CSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              L +  +V         ++ +          R   +   AK +    I   H FDD +
Sbjct: 197 AKLLDVPITVFESSIYDIVAEDEKSPCYLCARMRRGHLYAKAKELGCNKIALGHHFDDVI 256

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           ET+ M         G  +  M   +       + + RP    R +DI  +     +S+  
Sbjct: 257 ETIVMGML-----YGAQIQTMMPKLHSTNFEGMELIRPLYLVREDDIIHWARYNELSFIR 311

Query: 191 DPS----NTDDRFE------RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
                  N            R +V++ +R++     Y++   F+ +     + V
Sbjct: 312 CACRLTDNCSISETGDKGSMRAQVKKLIRELAAKNPYIEKNIFRSVENVSLDTV 365


>gi|82544200|ref|YP_408147.1| C32 tRNA thiolase [Shigella boydii Sb227]
 gi|123559537|sp|Q320D9|TTCA_SHIBS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|81245611|gb|ABB66319.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 311

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 TTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|24113173|ref|NP_707683.1| C32 tRNA thiolase [Shigella flexneri 2a str. 301]
 gi|30062867|ref|NP_837038.1| C32 tRNA thiolase [Shigella flexneri 2a str. 2457T]
 gi|110805759|ref|YP_689279.1| C32 tRNA thiolase [Shigella flexneri 5 str. 8401]
 gi|81723327|sp|Q83KS7|TTCA_SHIFL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123048160|sp|Q0T3Z1|TTCA_SHIF8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|24052163|gb|AAN43390.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30041115|gb|AAP16845.1| hypothetical protein S1448 [Shigella flexneri 2a str. 2457T]
 gi|110615307|gb|ABF03974.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|281601229|gb|ADA74213.1| ATPase [Shigella flexneri 2002017]
 gi|313650582|gb|EFS14985.1| PP-loop family protein [Shigella flexneri 2a str. 2457T]
 gi|332757685|gb|EGJ88016.1| PP-loop family protein [Shigella flexneri 4343-70]
 gi|332760198|gb|EGJ90494.1| PP-loop family protein [Shigella flexneri K-671]
 gi|332767615|gb|EGJ97808.1| C32 tRNA thiolase [Shigella flexneri 2930-71]
 gi|333004457|gb|EGK23987.1| PP-loop family protein [Shigella flexneri VA-6]
 gi|333004753|gb|EGK24275.1| PP-loop family protein [Shigella flexneri K-218]
 gi|333007299|gb|EGK26781.1| PP-loop family protein [Shigella flexneri K-272]
 gi|333018636|gb|EGK37930.1| PP-loop family protein [Shigella flexneri K-304]
 gi|333019295|gb|EGK38579.1| PP-loop family protein [Shigella flexneri K-227]
          Length = 311

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 TTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|56413420|ref|YP_150495.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|168235782|ref|ZP_02660840.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|194735405|ref|YP_002114682.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197362343|ref|YP_002141980.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|204927784|ref|ZP_03218985.1| YdaO [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238911960|ref|ZP_04655797.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|81360568|sp|Q5PHS1|TTCA_SALPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790145|sp|B5BJ71|TTCA_SALPK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790146|sp|B4TWA6|TTCA_SALSV RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|56127677|gb|AAV77183.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194710907|gb|ACF90128.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|197093820|emb|CAR59303.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197291136|gb|EDY30489.1| YdaO [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. SL480]
 gi|204323126|gb|EDZ08322.1| YdaO [Salmonella enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|322614907|gb|EFY11832.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619347|gb|EFY16227.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322623159|gb|EFY20001.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322628448|gb|EFY25236.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634856|gb|EFY31587.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322638579|gb|EFY35274.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640886|gb|EFY37534.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645385|gb|EFY41913.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651730|gb|EFY48102.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322654370|gb|EFY50692.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322661211|gb|EFY57437.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662661|gb|EFY58868.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667728|gb|EFY63888.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322671860|gb|EFY67981.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322677095|gb|EFY73159.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680243|gb|EFY76282.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685328|gb|EFY81324.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323194309|gb|EFZ79505.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199387|gb|EFZ84481.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204135|gb|EFZ89148.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323205859|gb|EFZ90822.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323217186|gb|EGA01907.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220065|gb|EGA04533.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227264|gb|EGA11434.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232048|gb|EGA16155.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234575|gb|EGA18662.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238028|gb|EGA22087.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323243371|gb|EGA27390.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323246178|gb|EGA30163.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253679|gb|EGA37506.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323259112|gb|EGA42758.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260420|gb|EGA44033.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266492|gb|EGA49979.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271216|gb|EGA54643.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 311

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|146304686|ref|YP_001192002.1| PP-loop domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145702936|gb|ABP96078.1| PP-loop domain protein [Metallosphaera sedula DSM 5348]
          Length = 315

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 36/245 (14%)

Query: 2   FLSPI-ESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           FLS + E V    + L   +   +L+AVSGG DS+ L   L  V+        K  A ++
Sbjct: 27  FLSDVQERVAREAKKLGVTSVSRVLIAVSGGKDSLVLADTLSKVMD-----PSKLIAFNI 81

Query: 59  DHCLRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----AAREA-------- 105
              ++    +D+V+ +      L I     S+K S   +         AR          
Sbjct: 82  VEGIQGYNREDQVKELYHYLRDLGIELISTSFKTSVGYSLDEMVSSSRARGLNIAACTFC 141

Query: 106 ---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
              R  LI++  + + A L+ T H  DD+ +T+ +   R    K M + G     L D  
Sbjct: 142 GGFRRKLINQAGRDVKADLVATGHNLDDEAQTIIINLLRGDVRKLMRV-GESPLKLSDKF 200

Query: 163 LWISRPFLRCRREDIRSFLLQRNISW--CEDPSNTDDRF--ERVRVRRFVRDIDLHALYL 218
           +   +P  +    +   +   +   +   E P      +   R  +R  VRD+ ++AL  
Sbjct: 201 VMRVKPLRKIYEWETTMYAFLKGFKFQEVECP------YISARPTMRAKVRDL-MYALEE 253

Query: 219 KMKKF 223
           K   F
Sbjct: 254 KSPGF 258


>gi|239907698|ref|YP_002954439.1| hypothetical protein DMR_30620 [Desulfovibrio magneticus RS-1]
 gi|239797564|dbj|BAH76553.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 308

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 61/199 (30%), Gaps = 22/199 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E+       +     +LVAVSGG DS+ L+  L  +      G +    + V   
Sbjct: 30  FKKQVETAVRRHGMIGRDEKVLVAVSGGKDSLALMRVLTDL------GHV-VEGLHVHLG 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           + +++          C+   +   V+                +  + A   + +    + 
Sbjct: 83  IPDSSDPVAERTRAFCAASGLTLHVLHTAEHGLAVPDVKDAVRRPVCAVCGKIKRHYFNR 142

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFL 170
            A       + T H  DD  ET   R   +         G     L     ++   +P  
Sbjct: 143 FAYENGFAALATGHNLDD--ETA--RLFANVLRWDPAYLGTQGPTLPGEGKFVRKIKPLY 198

Query: 171 RCRREDIRSFLLQRNISWC 189
           R    +  ++   + I   
Sbjct: 199 RLTEFETAAYCFLKGIDHW 217


>gi|325277005|ref|ZP_08142671.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas sp.
           TJI-51]
 gi|324097859|gb|EGB96039.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas sp.
           TJI-51]
          Length = 274

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  +L  L  +        I F  ++V+    +        +V    
Sbjct: 32  GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPITFEIVAVNMDQKQPG---FPEHVLPAY 85

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L + + +V                   +     R   +   A  I AT +   H  D
Sbjct: 86  LKALGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET ++    + A KGM           D    + RP   C  +DI+++   +     
Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSEKDIQAYSDMKAFPII 201

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+D+ +        + + +   + N     +         S+
Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258


>gi|323213900|gb|EFZ98671.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
          Length = 310

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|152987414|ref|YP_001349540.1| hypothetical protein PSPA7_4186 [Pseudomonas aeruginosa PA7]
 gi|205830611|sp|A6V906|TTCA_PSEA7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|150962572|gb|ABR84597.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 274

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 85/246 (34%), Gaps = 34/246 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS  +L  L  +        I+F  ++V+          H L      
Sbjct: 32  GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPGFPEHVL------ 82

Query: 69  EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +     I     +SVV  K  + +T   +     R   +   A  I AT +  
Sbjct: 83  -PEYLKSIGVEYHIVEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADEIGATKMAL 140

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183
            H  DD LET ++         G  L  M   +L D     + RP   C  +DI ++   
Sbjct: 141 GHHRDDILETFFLNMF-----YGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQL 195

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           +       P N     +    R+ V+++ L        + + +   + N V   +     
Sbjct: 196 KEFPII--PCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNL 252

Query: 244 VHMRSI 249
               S+
Sbjct: 253 FDFASL 258


>gi|298708709|emb|CBJ49206.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1257

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 78/234 (33%), Gaps = 16/234 (6%)

Query: 3    LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
            +  +       R +     + + +SGG DSM LL  L  +   R+    + +  +VD   
Sbjct: 875  MRAVGQAVQAWRMIEDGDRLCLGLSGGKDSMTLLHVLLHLQK-RAPITFEVACATVD--- 930

Query: 63   RETAKDEVRYVSDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKT 116
             +T   +   +     RL +         +   K S     L A     +  L+    + 
Sbjct: 931  PQTPSFDPSPLIPYLERLGVKLHYISSPIIEQAKTSMQGDSLCAFCARMKRGLLYACCRE 990

Query: 117  INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                 ++ A   DD  E+  M +  +   +    +   +  +   ++ + RP    R   
Sbjct: 991  QGYNKLVLAQHLDDLAESFIMSALHNGQVR----TMKANYKIEAGDVRVIRPLCYAREAL 1046

Query: 177  IRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             + F     +    +  N    FE  + R  V+ +      L    + +LR  +
Sbjct: 1047 TKDFARTNRLPLVNE--NCPACFEEPKERHRVKKMLAKEESLFPSMYANLRKAL 1098


>gi|307822366|ref|ZP_07652598.1| PP-loop domain protein [Methylobacter tundripaludum SV96]
 gi|307736932|gb|EFO07777.1| PP-loop domain protein [Methylobacter tundripaludum SV96]
          Length = 284

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 64/185 (34%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L  +       + +  A+++D   +        +V  +  
Sbjct: 36  GDKVMVCLSGGKDSFTLLDILMHLQKTAPV-EFELIAVNLD-QKQPG---FPEHVLPEYL 90

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + L + + +       V  +     T         R   +  +A+  N T I   H  DD
Sbjct: 91  ASLDVPYHIIEKDTYSVVKRVIPEGTTTCGLCSRLRRGTLYGYAEANNVTKIALGHHRDD 150

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET ++        K M    + D    D    I RP    R +DI      +N     
Sbjct: 151 ILETFFLNIFYGGKLKAMPPKLLSD----DKKNIIIRPLAYTREKDIERLAAFKNYPII- 205

Query: 191 DPSNT 195
            P N 
Sbjct: 206 -PCNL 209


>gi|300853679|ref|YP_003778663.1| putative ATPase [Clostridium ljungdahlii DSM 13528]
 gi|300433794|gb|ADK13561.1| predicted ATPase [Clostridium ljungdahlii DSM 13528]
          Length = 290

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 25/194 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCL 62
             + ++  F + +     + VAVSGG DS+ +      +         ++F A+  D   
Sbjct: 39  KFVRAISEF-KLVEEGDKVAVAVSGGKDSLTMAKLFQELQKHWKVNFNLEFIAM--DPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALISEH 113
            E        +  +    C  L I   +      +  ++  +        + R   +   
Sbjct: 96  HED-------IKKLLISNCEYLNIPVHIFESGIFNVVDNIAKDYPCYMCAKMRRGALYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRC 172
           AK +    +   H F+D +ET  +         G   + M      +   + + RP    
Sbjct: 149 AKELGCNKLALGHHFNDVIETTLLNIF----YSGSFKTMMPKLRSQNYEGIELIRPLYYV 204

Query: 173 RREDIRSFLLQRNI 186
               I  F+    I
Sbjct: 205 EESYIERFIQSSGI 218


>gi|269119262|ref|YP_003307439.1| PP-loop domain protein [Sebaldella termitidis ATCC 33386]
 gi|268613140|gb|ACZ07508.1| PP-loop domain protein [Sebaldella termitidis ATCC 33386]
          Length = 276

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 16/189 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++V  F   LV     I +A+SGG DS+ LL  L   L        +F A++++   
Sbjct: 36  KFLKAVNEF--GLVKDGDKIAIAISGGKDSL-LLYKLFQRLKKDKRRNFEFRAVNLNPGF 92

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTI 117
           ++    ++    +   +L I   +     WK +  +          + R  ++ +  +  
Sbjct: 93  KKE---DLDNFKNNLLKLDIDCEIFDTNIWKIANEKAKDYPCFLCAKMRRGILYKKVEEY 149

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +         G   +   +       L + RP +    +DI
Sbjct: 150 GYNKLALGHHFDDVIETTLINIF----YSGSVKTMTPEVDSTSGKLKVIRPLIYVEEKDI 205

Query: 178 RSFLLQRNI 186
            ++  +  I
Sbjct: 206 INYTKKNGI 214


>gi|289522928|ref|ZP_06439782.1| ATPase, PP-loop superfamily [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503952|gb|EFD25116.1| ATPase, PP-loop superfamily [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 299

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 29/237 (12%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     +++  F +     + ILVAVSGG DS+ L   L  +             + ++ 
Sbjct: 30  MLKRAAKAIDEF-KMFTKDSKILVAVSGGKDSLALWDILTRL-------GYNAHGLYINL 81

Query: 61  CLRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------------EAR 106
            + E   + +         +R+     VV+ K       +   A               R
Sbjct: 82  GIEENDYSNESEELSRTFANRIGKKLYVVNVK-EIHGMSIPDKAYSKKRKTCSVCGVTKR 140

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           Y  +++ A+  N  +I+T H  DDQ   +       +    +         L+      +
Sbjct: 141 Y-YMNKTAREGNFDVIVTGHNLDDQAAALLGNLL-YWKFDYLAKGAPYSPPLWKGEFAKA 198

Query: 167 RPFLRCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
           +P + C  ++   + L + I +   E P +    F R +    + +I+ ++   K  
Sbjct: 199 KPLILCTEKENTVYCLLQGIDYIQKECPYSEGATFLRWK--HILNEIEENSPGAKQA 253


>gi|167992837|ref|ZP_02573933.1| YdaO [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205329037|gb|EDZ15801.1| YdaO [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|267993586|gb|ACY88471.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|332988541|gb|AEF07524.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 311

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|326791339|ref|YP_004309160.1| PP-loop domain protein [Clostridium lentocellum DSM 5427]
 gi|326542103|gb|ADZ83962.1| PP-loop domain protein [Clostridium lentocellum DSM 5427]
          Length = 281

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 11/178 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DSM L   +  +       K +   + +D       +  +    D
Sbjct: 33  IQNGDKIAVCISGGKDSMLLAKCMQELQRHWQV-KFELVFLVMDPGYNPYNRKVIE---D 88

Query: 76  VCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               L I  ++         ++ +          R   + + AK +    I   H FDD 
Sbjct: 89  NAKLLNIPITIFESPIFDVVAEVEDTPCYLCARMRRGYLYKEAKDLGCNKIALGHHFDDV 148

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           +ET+ M        K M       +  Y+  + + RP    +  DI +++    +S+ 
Sbjct: 149 IETILMSMLYSGQIKTM--MPKLHSTNYE-GMELIRPLYLVKEADIVAWVRYNELSFI 203


>gi|168819457|ref|ZP_02831457.1| YdaO [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|200390490|ref|ZP_03217101.1| YdaO [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|199602935|gb|EDZ01481.1| YdaO [Salmonella enterica subsp. enterica serovar Virchow str.
           SL491]
 gi|205343858|gb|EDZ30622.1| YdaO [Salmonella enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320085852|emb|CBY95628.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 311

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           I    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVIDGGDLAFDREEI 284


>gi|66357668|ref|XP_626012.1| MJ1157-like thiouridine synthase (Pploop atpase) plus Zn ribbon.
           involved in RNA metabolism. [Cryptosporidium parvum Iowa
           II]
 gi|46227217|gb|EAK88167.1| MJ1157-like thiouridine synthase (Pploop atpase) plus Zn ribbon.
           involved in RNA metabolism. [Cryptosporidium parvum Iowa
           II]
          Length = 306

 Score = 86.9 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 34/256 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + V +SGG DS  LL  L+ + + R    I+   I+VD  ++    D +  V       
Sbjct: 11  RVGVCISGGKDSSVLLNVLYEL-NKRKDYGIELELIAVDEGIKGYRDDSLEVVKYQQEYY 69

Query: 81  RIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
               +++S+K+              ++         R   +   +  +NA +I T H+ D
Sbjct: 70  NCPLTILSFKDMFNTTMDEIQSKSSKSNSCTYCGVFRRKALDIGSYKVNADVICTGHSCD 129

Query: 130 DQLETVYMRSQRDYAEKGM----------------GLSGMCDTILYDLNLW-ISRPFLRC 172
           D  ET+ +   R    +                   +          LN+    +P + C
Sbjct: 130 DTCETLLLNILRGDFNRLRRCINPITNNEITTTKDQMQNHDSQNEAFLNIKPRVKPLMYC 189

Query: 173 RREDIRSFLLQRNISWCEDPSNTD-DRFE---RVRVRRFVRDIDLHALYLKMKKFQDLRV 228
             ++I  +    N+ +         D +    R  +R+ ++  D    +  +   Q+L +
Sbjct: 190 YEKEIVLYAHYLNLKYFSTECTYSVDAYRGVSREFIRK-IQSFDYKYSFNMILAAQELNL 248

Query: 229 KVNNAVAMLIPKYLTV 244
           + +N+    I +  T+
Sbjct: 249 EQSNSSPNYIARKCTI 264


>gi|260549245|ref|ZP_05823465.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter sp.
           RUH2624]
 gi|260407651|gb|EEX01124.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter sp.
           RUH2624]
          Length = 301

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 20/196 (10%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETA 66
           ++R F   +     ++V VSGG DS  LL  L      +    I F  ++V+    +   
Sbjct: 37  AIRDF-NMIEDGDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGF 92

Query: 67  KDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
            ++V           I + +       ++ + +       A     R   +   A+ I A
Sbjct: 93  PEDVLP--RYMEENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGA 150

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T +   H  DD + T ++      + K M        +  D    + RP      +DI  
Sbjct: 151 TKVALGHHRDDIIATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIK 206

Query: 180 FLLQRNISWCEDPSNT 195
           +   R       P N 
Sbjct: 207 YAELRKFPII--PCNL 220


>gi|254466190|ref|ZP_05079601.1| hypothetical protein RBY4I_2798 [Rhodobacterales bacterium Y4I]
 gi|206687098|gb|EDZ47580.1| hypothetical protein RBY4I_2798 [Rhodobacterales bacterium Y4I]
          Length = 295

 Score = 86.5 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R        LV +SGG DS  LL  L+ +   R    +   A ++D   +         +
Sbjct: 46  REDGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVL 101

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   ++ + H +       +            A     R   +   A+    + ++  H
Sbjct: 102 PEFLEKMGVPHRIEYQDTYSIVVDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGH 161

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD LET +M         G   +     +  + +L++ RP       D   F    N 
Sbjct: 162 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARAMNY 217

Query: 187 SWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                D   + D  +R +V++ +   + ++   +   F+ L
Sbjct: 218 PIIPCDLCGSQDGLQRQQVKQILDQWESNSPGRRQVMFRAL 258


>gi|330911208|gb|EGH39718.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Escherichia coli AA86]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +    L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|324006197|gb|EGB75416.1| PP-loop family protein [Escherichia coli MS 57-2]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +    L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|170683989|ref|YP_001743832.1| C32 tRNA thiolase [Escherichia coli SMS-3-5]
 gi|205830586|sp|B1LG84|TTCA_ECOSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|170521707|gb|ACB19885.1| PP-loop family protein [Escherichia coli SMS-3-5]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +    L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|117623596|ref|YP_852509.1| C32 tRNA thiolase [Escherichia coli APEC O1]
 gi|205830584|sp|A1AAV5|TTCA_ECOK1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|115512720|gb|ABJ00795.1| hypothetical protein YdaO [Escherichia coli APEC O1]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +    L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|91210638|ref|YP_540624.1| C32 tRNA thiolase [Escherichia coli UTI89]
 gi|218558331|ref|YP_002391244.1| C32 tRNA thiolase [Escherichia coli S88]
 gi|237705374|ref|ZP_04535855.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Escherichia sp.
           3_2_53FAA]
 gi|122423840|sp|Q1RC21|TTCA_ECOUT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254789876|sp|B7MM21|TTCA_ECO45 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|91072212|gb|ABE07093.1| hypothetical protein YdaO [Escherichia coli UTI89]
 gi|218365100|emb|CAR02807.1| putative C32 tRNA thiolase [Escherichia coli S88]
 gi|226900131|gb|EEH86390.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Escherichia sp.
           3_2_53FAA]
 gi|294492177|gb|ADE90933.1| PP-loop family protein [Escherichia coli IHE3034]
 gi|307627082|gb|ADN71386.1| C32 tRNA thiolase [Escherichia coli UM146]
 gi|315289077|gb|EFU48475.1| PP-loop family protein [Escherichia coli MS 110-3]
 gi|323949053|gb|EGB44945.1| ydaO protein [Escherichia coli H252]
 gi|323956905|gb|EGB52637.1| ydaO protein [Escherichia coli H263]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +    L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|26247680|ref|NP_753720.1| C32 tRNA thiolase [Escherichia coli CFT073]
 gi|110641578|ref|YP_669308.1| C32 tRNA thiolase [Escherichia coli 536]
 gi|191170922|ref|ZP_03032473.1| protein YdaO [Escherichia coli F11]
 gi|218689334|ref|YP_002397546.1| C32 tRNA thiolase [Escherichia coli ED1a]
 gi|227886219|ref|ZP_04004024.1| PP-loop superfamily ATPase MesJ [Escherichia coli 83972]
 gi|300971603|ref|ZP_07171514.1| PP-loop family protein [Escherichia coli MS 45-1]
 gi|300972036|ref|ZP_07171796.1| PP-loop family protein [Escherichia coli MS 200-1]
 gi|301046193|ref|ZP_07193366.1| PP-loop family protein [Escherichia coli MS 185-1]
 gi|331646675|ref|ZP_08347778.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331657398|ref|ZP_08358360.1| conserved hypothetical protein [Escherichia coli TA206]
 gi|81476555|sp|Q8FHP6|TTCA_ECOL6 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123344045|sp|Q0TI22|TTCA_ECOL5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790124|sp|B7MUI7|TTCA_ECO81 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|26108082|gb|AAN80282.1|AE016760_141 Hypothetical protein ydaO [Escherichia coli CFT073]
 gi|27526304|emb|CAD42727.1| YdaO protein [Escherichia coli]
 gi|110343170|gb|ABG69407.1| hypothetical protein YdaO [Escherichia coli 536]
 gi|190908654|gb|EDV68242.1| protein YdaO [Escherichia coli F11]
 gi|218426898|emb|CAR07753.2| putative C32 tRNA thiolase [Escherichia coli ED1a]
 gi|222033148|emb|CAP75888.1| UPF0021 protein ydaO [Escherichia coli LF82]
 gi|227836423|gb|EEJ46889.1| PP-loop superfamily ATPase MesJ [Escherichia coli 83972]
 gi|281178535|dbj|BAI54865.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|300301802|gb|EFJ58187.1| PP-loop family protein [Escherichia coli MS 185-1]
 gi|300309258|gb|EFJ63778.1| PP-loop family protein [Escherichia coli MS 200-1]
 gi|300411217|gb|EFJ94755.1| PP-loop family protein [Escherichia coli MS 45-1]
 gi|307553406|gb|ADN46181.1| PP-loop family protein [Escherichia coli ABU 83972]
 gi|312945980|gb|ADR26807.1| C32 tRNA thiolase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315295394|gb|EFU54724.1| PP-loop family protein [Escherichia coli MS 153-1]
 gi|315297175|gb|EFU56455.1| PP-loop family protein [Escherichia coli MS 16-3]
 gi|320195642|gb|EFW70267.1| C32 tRNA thiolase [Escherichia coli WV_060327]
 gi|323187578|gb|EFZ72887.1| PP-loop family protein [Escherichia coli RN587/1]
 gi|324011375|gb|EGB80594.1| PP-loop family protein [Escherichia coli MS 60-1]
 gi|331045427|gb|EGI17554.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331055646|gb|EGI27655.1| conserved hypothetical protein [Escherichia coli TA206]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                +V  +    L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHVLPEYLETLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|16764998|ref|NP_460613.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167549859|ref|ZP_02343617.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|168260142|ref|ZP_02682115.1| YdaO [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|197248499|ref|YP_002146377.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197264456|ref|ZP_03164530.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|81522812|sp|Q8ZP88|TTCA_SALTY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790138|sp|B5F5C0|TTCA_SALA4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|16420181|gb|AAL20572.1| putative ATPase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197212202|gb|ACH49599.1| YdaO [Salmonella enterica subsp. enterica serovar Agona str. SL483]
 gi|197242711|gb|EDY25331.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|205324962|gb|EDZ12801.1| YdaO [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205350986|gb|EDZ37617.1| YdaO [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|261246846|emb|CBG24662.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301158182|emb|CBW17680.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912645|dbj|BAJ36619.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321224280|gb|EFX49343.1| tRNACytosine32-2-thiocytidine synthetase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323129923|gb|ADX17353.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|262371972|ref|ZP_06065251.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter junii
           SH205]
 gi|262311997|gb|EEY93082.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acinetobacter junii
           SH205]
          Length = 301

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 74/239 (30%), Gaps = 20/239 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVSDVC 77
              ++V VSGG DS  LL  L      +    I F  ++V+    +    ++V       
Sbjct: 47  GDKVMVCVSGGKDSYTLLDILLQF---KRIAPINFDIVAVNLDQKQPGFPEDVLP--RYM 101

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
               I + +       ++ + +       A     R   +   A+ I AT +   H  DD
Sbjct: 102 EENNIPYYILEKDTYTITKRLTPEGKTYCAVCSRLRRGSLYGFAQEIGATKVALGHHRDD 161

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            + T ++      + K M        +  D    + RP      +DI  +   R      
Sbjct: 162 IMATFFLNLFHGGSLKAM----PPKLLSSDKKNILIRPLAYVEEKDIIKYAELRKFPII- 216

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            P N     +    R  + D+         K+   +   + N     +         ++
Sbjct: 217 -PCNLCGS-QENLQRAIINDMLREWDKQYPKRLHSIFGALQNVSPSQLADRELFDFEAL 273


>gi|26988373|ref|NP_743798.1| C32 tRNA thiolase [Pseudomonas putida KT2440]
 gi|81441647|sp|Q88MD2|TTCA_PSEPK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|24983126|gb|AAN67262.1|AE016353_2 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 274

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 77/240 (32%), Gaps = 22/240 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  +L  L  +        I F  ++V+    +        +V    
Sbjct: 32  GDKVMVCLSGGKDSYTMLDVLLHLQK---VAPITFEIVAVNMDQKQPG---FPEHVLPAY 85

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L + + +V                   +     R   +   A  I AT +   H  D
Sbjct: 86  LKELGVEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET ++    + A KGM           D    + RP   C   DI+++   +     
Sbjct: 146 DIVETFFLNMFFNGALKGM----PPKLRADDGRNVVIRPLAYCSERDIQAYSDMKAFPII 201

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+D+ +        + + +   + N     +         S+
Sbjct: 202 --PCNLCGS-QENLQRQVVKDMLVEWERKHPGRTESIFRALQNVAPSQLADRNLFDFTSL 258


>gi|222478949|ref|YP_002565186.1| PP-loop domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451851|gb|ACM56116.1| PP-loop domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 326

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 65/184 (35%), Gaps = 19/184 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             ++ +SGG DS+ L   L  V       +++  A+++   +     + +    ++   L
Sbjct: 55  RWVIGLSGGKDSVALTQILDDVFGK--DPRVEMLALTIHEGIEGYRDESIDATIELTEDL 112

Query: 81  RIAHSVVSWKNS------------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
            I H VVS++                     A     R  L+ ++A   +A  ++T H  
Sbjct: 113 SIRHEVVSYEEEFDVQMDDVVESDPENMAACAYCGVFRRDLLEKYAAEFDADKLLTGHNL 172

Query: 129 DDQLETVYMRSQRD-----YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           DD+ +T  M                 L    +    D  +  ++P      ++I  +   
Sbjct: 173 DDEAQTAMMNFLEGDVRQVAKHFDASLGPFDERGGTDAFVPRAKPLRDVPEKEIALYCHV 232

Query: 184 RNIS 187
           R++ 
Sbjct: 233 RDLP 236


>gi|157375358|ref|YP_001473958.1| PP-loop domain-containing protein [Shewanella sediminis HAW-EB3]
 gi|205830641|sp|A8FVF7|TTCA_SHESH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|157317732|gb|ABV36830.1| PP-loop domain protein [Shewanella sediminis HAW-EB3]
          Length = 316

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 20/212 (9%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++   R+  K +  A+++D   +    +EV         L + + 
Sbjct: 44  LSGGKDSYAMLDILLNLQ-QRAPIKFEIVAVNLD-QKQPGFPEEVLPA--YLDTLNVPYH 99

Query: 86  VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++                   +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 100 IIEKDTYSVVREKIPEGQKTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETLFLN 159

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT--- 195
                   G   +     +  D    + RP    R +DI  +   +       P N    
Sbjct: 160 MF----FAGKQKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAELKAFPII--PCNLCGS 213

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +  +R  V+  +   D H        F  ++
Sbjct: 214 QENLKRAEVKDMLNLWDEHHPGRIESIFTAMQ 245


>gi|320186802|gb|EFW61523.1| C32 tRNA thiolase [Shigella flexneri CDC 796-83]
 gi|332094958|gb|EGI99998.1| PP-loop family protein [Shigella boydii 3594-74]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 92/268 (34%), Gaps = 21/268 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPGF 84

Query: 67  KDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINA 119
            + V  V     +L + + +V        K   P+     +     R  ++   A  + A
Sbjct: 85  PEHVLPV--YLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGA 142

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+ 
Sbjct: 143 TKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQR 198

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           F   +       P N        +R  +   +RD D          F  ++  V + +  
Sbjct: 199 FADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCD 256

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264
                          ++   L  D   +
Sbjct: 257 TNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|187732105|ref|YP_001880184.1| C32 tRNA thiolase [Shigella boydii CDC 3083-94]
 gi|205830633|sp|B2U0Z1|TTCA_SHIB3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|187429097|gb|ACD08371.1| PP-loop family protein [Shigella boydii CDC 3083-94]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 92/268 (34%), Gaps = 21/268 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPGF 84

Query: 67  KDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINA 119
            + V  V     +L + + +V        K   P+     +     R  ++   A  + A
Sbjct: 85  PEHVLPV--YLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGA 142

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+ 
Sbjct: 143 TKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQR 198

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           F   +       P N        +R  +   +RD D          F  ++  V + +  
Sbjct: 199 FADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCD 256

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264
                          ++   L  D   +
Sbjct: 257 TNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|331083984|ref|ZP_08333091.1| hypothetical protein HMPREF0992_02015 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402346|gb|EGG81916.1| hypothetical protein HMPREF0992_02015 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 386

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 11/175 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DSM +      +   R         + +D    ET +  +   + +  
Sbjct: 137 GDKIAVCISGGKDSMLMAKLFQELQKHRKV-NFDVVFLVMDPGYNETNRKVIEENARL-- 193

Query: 79  RLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            L I  ++    +     + +          R   +   AK +    I   H +DD +ET
Sbjct: 194 -LNIPITIFETNIFETVYEIEKSPCYLCARMRRGYLYSKAKELGCNKIALGHHYDDVIET 252

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           + M        + M       +  ++  + + RP    R +DI+ +    ++ + 
Sbjct: 253 ILMGMLYGAQIQTM--MPKLHSTNFEA-MELIRPMYLIREDDIKHWRDYNDLHFI 304


>gi|163749023|ref|ZP_02156274.1| hypothetical protein KT99_12994 [Shewanella benthica KT99]
 gi|161331399|gb|EDQ02287.1| hypothetical protein KT99_12994 [Shewanella benthica KT99]
          Length = 316

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 73/212 (34%), Gaps = 20/212 (9%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++   R+  K     +++D   +    +EV    +    L + + 
Sbjct: 44  LSGGKDSYAMLDILLNLQ-QRAPIKFDIVVVNLD-QKQPGFPEEVLP--NYLDTLNVPYH 99

Query: 86  VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++                   +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 100 ILEKDTYSIVRSKIPEGQKTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETMFLN 159

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT--- 195
                   G   +     +  D    + RP    R +DI  +   ++      P N    
Sbjct: 160 MF----YAGKQKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAQLKSFPII--PCNLCGS 213

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +  +R  V+  +   D+         F  ++
Sbjct: 214 QENLKRASVKAMLEQWDVEHPGRIESIFTAMQ 245


>gi|330960606|gb|EGH60866.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 274

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 87/273 (31%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  LL  L  +        I+F  ++V+    +  
Sbjct: 21  EAVADF-NMIEDGDKVMVCLSGGKDSYTLLDVLLHLQK---VAPIRFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L + + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKALGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+D+ L         ++        ++   
Sbjct: 190 QAYSGLKQFPII--PCNLCGS-QENLQRQVVKDMLLD--------WERKTPGRTESIFRA 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +       +          L ID T     + V
Sbjct: 239 LQNVQPSQLADRKLFDFSNLRIDETAASRFVNV 271


>gi|91789928|ref|YP_550880.1| C32 tRNA thiolase [Polaromonas sp. JS666]
 gi|123059391|sp|Q124R0|TTCA_POLSJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|91699153|gb|ABE45982.1| tRNA s(2)C-32 sulfurtransferase [Polaromonas sp. JS666]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 17/179 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V VSGG DS  +L  L  +   R+  +    A+++D   +       ++V  D  
Sbjct: 50  GDKVMVCVSGGKDSYAMLDILLKLQK-RAPIRFDLIAVNLD-QKQPG---FPKHVLPDYL 104

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L +   +       +  +       L +     R  ++   A  + AT I   H  DD
Sbjct: 105 GKLDVPFHIENQDTYSIVKRVIPEGKTLCSLCSRLRRGILYRVAGELGATKIALGHHRDD 164

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            L+T ++        KGM        +  D    + RP      +D+  +   R+    
Sbjct: 165 MLQTFFLNMFFAAKLKGM----PPKLVSDDGKNIVIRPMAYVPEKDLTRWAQVRDFPII 219


>gi|320174310|gb|EFW49465.1| C32 tRNA thiolase [Shigella dysenteriae CDC 74-1112]
          Length = 311

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 92/268 (34%), Gaps = 21/268 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILLNLQQSAPI-NFSLVAVNLD-QKQPGF 84

Query: 67  KDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINA 119
            + V  V     +L + + +V        K   P+     +     R  ++   A  + A
Sbjct: 85  PEHVLPV--YLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGA 142

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+ 
Sbjct: 143 TKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQR 198

Query: 180 FLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           F   +       P N        +R  +   +RD D          F  ++  V + +  
Sbjct: 199 FADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCD 256

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLL 264
                          ++   L  D   +
Sbjct: 257 TNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|221064982|ref|ZP_03541087.1| PP-loop domain protein [Comamonas testosteroni KF-1]
 gi|220710005|gb|EED65373.1| PP-loop domain protein [Comamonas testosteroni KF-1]
          Length = 327

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 83/257 (32%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L  +   R+  K    A+++D   +        +V  +  
Sbjct: 66  GDKIMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPEYF 120

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +       V  +               R A++ + A  +  T +   H  DD
Sbjct: 121 QSIGVDYHIENQDTYSVVKRVVPEGKTTCGLCSRLRRAILYKVADQLGCTKVALGHHRDD 180

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ++T+ +        KGM        +  D    + RP      +D   +   +N     
Sbjct: 181 IVQTMMLNMFYGGRMKGM----PPKLVSDDGRHVVIRPLCYVPEKDTTRWAQYQNFPII- 235

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N     D  +RV V   +R+ D          F+ +   V   +             
Sbjct: 236 -PCNLCGSQDGLQRVAVGNMLREWDKKFPGRIESMFRAMGNIVTTHMMDPQLHDFRNAKA 294

Query: 248 SIIAISQDILNIDSTLL 264
           + IA     +  D   L
Sbjct: 295 TGIADPNGDMAFDHEEL 311


>gi|16760232|ref|NP_455849.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141999|ref|NP_805341.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213053470|ref|ZP_03346348.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213416969|ref|ZP_03350113.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
 gi|213614398|ref|ZP_03371224.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
 gi|289823675|ref|ZP_06543287.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|81514744|sp|Q8Z783|TTCA_SALTI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|25305888|pir||AC0663 conserved hypothetical protein STY1412 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502527|emb|CAD01676.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137628|gb|AAO69190.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 311

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           I    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVIDGGDLAFDREEI 284


>gi|194433858|ref|ZP_03066132.1| protein YdaO [Shigella dysenteriae 1012]
 gi|194417961|gb|EDX34056.1| protein YdaO [Shigella dysenteriae 1012]
 gi|332098106|gb|EGJ03079.1| PP-loop family protein [Shigella dysenteriae 155-74]
          Length = 311

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPEYLEKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI+
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIQ 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFADAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           ++   L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVNGGDLAFDREEI 284


>gi|87045850|gb|ABD17746.1| putative GMP synthase [Methanococcus voltae PS]
          Length = 318

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 22/203 (10%)

Query: 8   SVRFFVRSLVYPAHI--LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
            VR  +   +   HI   V +SGG DS+ +   L+   +       K   I V+  +   
Sbjct: 43  KVRKNLGKNILKNHITIGVGISGGKDSLVMAHILNEFFNQ--IPNSKIVGIMVNEGIEGF 100

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW---------------KNSKPQTGLMAAAREARYALI 110
             D +      C    I + +V++               K         +     R  ++
Sbjct: 101 RNDGIEKGIKFCEEYGIEYHIVTFSEYIDSDLDSIVAIAKEKNMTMNPCSFCGVIRRKIL 160

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +  A       +   H  DD  + V M       +K   L+ +  +   D  +   +P  
Sbjct: 161 NRVAIEKGCDYLAIGHNLDDISQAVMMNYIEGDIKK---LAILGKSSQSDKFVKRIKPLS 217

Query: 171 RCRREDIRSFLLQRNISWCEDPS 193
           +   E+++ F     + + ++P 
Sbjct: 218 KIPEEEVKLFADILEMDYHKEPC 240


>gi|291612641|ref|YP_003522798.1| PP-loop domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291582753|gb|ADE10411.1| PP-loop domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 284

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 96/250 (38%), Gaps = 21/250 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79
           ++V +SGG DS  LL  L ++   R+    K  A+++D   +     +V   Y+  +   
Sbjct: 44  VMVCLSGGKDSYTLLDILRTLQK-RAPVDFKLIAMNLD-QKQPGFPADVLPNYLKSIGVD 101

Query: 80  LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I     +S+V  K  + +T   +     R  +I + A  + A  I   H  DD +ET+
Sbjct: 102 FHIETQDTYSIVKEKIPEGKT-TCSLCSRLRRGIIYKVAGELGANKIALGHHRDDMVETL 160

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           ++         G  L  M   ++ D    I  RP   C  +DI  +           P N
Sbjct: 161 FLNMF-----FGGKLKAMPPKLVTDKGDHIVIRPLAYCAEKDIARYARGMEFPII--PCN 213

Query: 195 T---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRSII 250
                +  +R  +++ + + +          F  ++ VK ++ +   +  +  + + + +
Sbjct: 214 LCGSQENLQRQNIKQMLHEWERQYPGRSQTIFTAMQNVKPSHLLDTSLFDFRNIQLGAAV 273

Query: 251 AISQDILNID 260
                  + +
Sbjct: 274 DEGDVAFDQE 283


>gi|83950480|ref|ZP_00959213.1| ATPase of the PP superfamily protein [Roseovarius nubinhibens ISM]
 gi|83838379|gb|EAP77675.1| ATPase of the PP superfamily protein [Roseovarius nubinhibens ISM]
          Length = 295

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 15/175 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL  LH +   R    ++  A ++D   +         +    
Sbjct: 50  RGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVEILACNLD---QGQPGFPATVLPKFL 105

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + H +       V            A     R   +   A+    + ++  H  DD
Sbjct: 106 EDMGVPHRIEYQDTYSVVMDKVPEGRTFCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 165

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            LET +M         G   +     +  + +L++ RP      ED   F     
Sbjct: 166 MLETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAFVAEEDCEKFSRAMQ 216


>gi|163733764|ref|ZP_02141206.1| hypothetical protein RLO149_05613 [Roseobacter litoralis Och 149]
 gi|161392875|gb|EDQ17202.1| hypothetical protein RLO149_05613 [Roseobacter litoralis Och 149]
          Length = 274

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 15/163 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL  L+ +   R    ++  A ++D   +         +    
Sbjct: 44  KGAKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVELLACNLD---QGQPGFPATVLPAFL 99

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            ++ + H V       +          L A     R   +   A+    + ++  H  DD
Sbjct: 100 EKMGVPHRVEYQDTYSIVMDKVPEGRTLCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 159

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            LET  M         G   +     +  + +L++ RP     
Sbjct: 160 ILETFLMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVS 198


>gi|266622461|ref|ZP_06115396.1| PP-loop family protein [Clostridium hathewayi DSM 13479]
 gi|288865817|gb|EFC98115.1| PP-loop family protein [Clostridium hathewayi DSM 13479]
          Length = 307

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 11/179 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +    +I V +SGG DSM L   +  +L      K     + +D       +   + +
Sbjct: 35  KMIEEGDNIAVCISGGKDSMLLAKCMQEILR-HGKMKFGLHFLVMDPGYHPANR---KLI 90

Query: 74  SDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +  + + I   +                       R   +  HAK +    I   H FD
Sbjct: 91  EENAALMEIPIEIFESDIFDVVVDVDESPCYLCARMRRGFLYAHAKELGCNKIALGHHFD 150

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           D +ETV M          M       +  ++  + + RP    +   I  +  +  + +
Sbjct: 151 DVIETVLMSMLYGGQVNTM--MPKLHSTNFE-GMELLRPLYFVKERAIIDWKEENGLQF 206


>gi|325114092|emb|CBZ49650.1| conserved putative aminotransferase class V domain-containing protein
            [Neospora caninum Liverpool]
          Length = 1778

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 25/196 (12%)

Query: 7    ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HC 61
            E++R F   +     +LV +SGG DS+ LL  L  +   R+      +A +VD       
Sbjct: 1416 EAIRSF-DMIREGDRLLVGISGGKDSLTLLHVLRDLQR-RAPVSFSLAAATVDPVTPEFN 1473

Query: 62   LRETAKDEVRYVSDVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAK 115
             R         +      L I +  +        K    +  + A     +  L+    +
Sbjct: 1474 PRP--------LIKYMEDLGIRYHYLRLPIMALAKERMQRQSICAFCSRLKRGLLYSCMR 1525

Query: 116  TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +++     DD  E+  M +  +     M    +      D +L I RP +  R  
Sbjct: 1526 KHGYNVLVLGQHLDDACESFLMSAFHNGVLNTMKGHYVNA----DGDLRICRPLITTRER 1581

Query: 176  DIRSFLLQRNISWCED 191
            +   F     +    D
Sbjct: 1582 ETAQFAGTHRLPVIAD 1597


>gi|238758667|ref|ZP_04619842.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia aldovae
           ATCC 35236]
 gi|238703178|gb|EEP95720.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia aldovae
           ATCC 35236]
          Length = 314

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++            A+++D   +    +++       +
Sbjct: 39  GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLN 94

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 95  KQGVEYQIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F L +       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFALAKEYPII-- 208

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +              
Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKSITHD 268

Query: 249 IIAISQDILNIDSTLL 264
              +    L  D   L
Sbjct: 269 SQIVDGGDLAFDREEL 284


>gi|296137275|ref|YP_003644517.1| PP-loop domain protein [Thiomonas intermedia K12]
 gi|295797397|gb|ADG32187.1| PP-loop domain protein [Thiomonas intermedia K12]
          Length = 334

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 15/177 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ++V +SGG DS  LL  L S+  +R+       A+++D   +     EV    D  
Sbjct: 73  QGDKVMVCMSGGKDSYALLDILLSL-RERAPIDFDLVAVNLD-QKQPGFPQEVLP--DYL 128

Query: 78  SRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDD 130
               +   +           +              R  ++   A  + AT I   H  DD
Sbjct: 129 KSRGVPFHIEEQDTYSIVKSIIPEGKTTCGLCSRLRRGILYRVAGELGATKIALGHHRDD 188

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            LET ++        KGM        +  D    + RP       D+  +   R   
Sbjct: 189 ILETFFLNLFFGGTLKGM----PPKLVSDDGKHVVIRPLAYVEETDLERWAELRAFP 241


>gi|253989444|ref|YP_003040800.1| C32 tRNA thiolase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780894|emb|CAQ84056.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 297

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L ++        +KF  ++V+  L +       ++
Sbjct: 32  NMIEENDVVMACISGGKDSFAMLDILLNLQK---VAPVKFKVVAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTA 125
                  L I + +V        K   P+           R   +   A+ I AT I   
Sbjct: 87  LPQYFESLDIPYYIVDKDTFSVVKEKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHLDDIVETLFLNMFHGSRMKAM----PPKLRSDDGRNVVIRPLTYCREKDLIKYSEYKE 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|294624762|ref|ZP_06703426.1| PP-loop family ATPase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600943|gb|EFF45016.1| PP-loop family ATPase [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 306

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 77/245 (31%), Gaps = 22/245 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     I+V +SGG DS  LL  L  +        + FS ++V+  L +   D   +V  
Sbjct: 48  IAPGDKIMVCLSGGKDSYTLLDMLLRLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102

Query: 75  DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L +   VV                 + +     R   +  +A+T   T I   H 
Sbjct: 103 AYLRGLGVPFDVVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186
            DD + T +M            L+ M   +  D     + RP    R  DI ++   R  
Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
                P N     +    R+ V  +       +  + + +   + +     +        
Sbjct: 218 PII--PCNLCGS-QENLQRQQVGKMLQQWDREQPGRVEQIARALGDVRPEQLADRTLFDF 274

Query: 247 RSIIA 251
            ++  
Sbjct: 275 LALGR 279


>gi|289666219|ref|ZP_06487800.1| PP-loop family ATPase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 305

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 78/248 (31%), Gaps = 22/248 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
              +     I+V +SGG DS  LL  L  +        + F+ ++V+  L +   D   +
Sbjct: 45  FSMIAPGDKIMVCLSGGKDSYTLLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAH 99

Query: 73  VS-DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMT 124
           V       L +   +V                 + +     R   +  +A+T   T I  
Sbjct: 100 VLPAYLRGLGVPFDIVEQDTYSVVSRLIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIAL 159

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183
            H  DD + T +M            L+ M   +  D     + RP    R  DI ++   
Sbjct: 160 GHHRDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQA 214

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R       P N     +    R+ V  +       +  + + +   + +     +   + 
Sbjct: 215 RQFPII--PCNLCGS-QENLQRQQVGKMLQQWDREQPGRVEQIARALGDVRPEQLADRML 271

Query: 244 VHMRSIIA 251
               ++  
Sbjct: 272 FDFLALGR 279


>gi|168241213|ref|ZP_02666145.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
 gi|194447955|ref|YP_002045696.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|254790142|sp|B4TIS7|TTCA_SALHS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|194406259|gb|ACF66478.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|205339158|gb|EDZ25922.1| YdaO [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL486]
          Length = 311

 Score = 86.5 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|53803008|ref|YP_115273.1| hypothetical protein MCA2880 [Methylococcus capsulatus str. Bath]
 gi|81680839|sp|Q603C7|TTCA_METCA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|53756769|gb|AAU91060.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 289

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 62/188 (32%), Gaps = 19/188 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L  +  +         A+++D   +     +V    +
Sbjct: 38  IQEGDRVMVCLSGGKDSFTLLDILLKLRINAPV-NFDLVAVNLD-QKQPGFPADVLP--N 93

Query: 76  VCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTF 128
             S   I   ++          +              R  L+  +A     T I   H  
Sbjct: 94  YLSEQGIPFHIIEQDTYSVVKSIIPEGKTTCGLCSRLRRGLLYRYAADHGITKIALGHHR 153

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187
           DD LET ++         G  L  M   +L D    I  RP   C+ EDI  +   R   
Sbjct: 154 DDILETFFLNLF-----YGGTLKAMPPKLLSDDRRHIVIRPLAYCKEEDIARYARIRAFP 208

Query: 188 WCEDPSNT 195
               P N 
Sbjct: 209 II--PCNL 214


>gi|146281659|ref|YP_001171812.1| hypothetical protein PST_1276 [Pseudomonas stutzeri A1501]
 gi|205830617|sp|A4VJ19|TTCA_PSEU5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|145569864|gb|ABP78970.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
 gi|327479906|gb|AEA83216.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 274

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 35/258 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD------- 59
           E+V  F   +     ++V +SGG DS  +L  L  +        I+F  ++V+       
Sbjct: 21  EAVTDF-NMIEDGDKVMVCLSGGKDSYTMLDVLLYLQK---VAPIRFEVVAVNMDQKQPG 76

Query: 60  ---HCLRETAKDEVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISE 112
              H L         Y+  +     I     +SVV  K  + +T   +     R   +  
Sbjct: 77  FPEHVL-------PEYLKSIGVEYHIIEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYT 128

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLR 171
            A  I AT +   H  DD LET ++         G  L  M   +L D     + RP   
Sbjct: 129 FADEIGATKMALGHHRDDILETFFLNMF-----YGGTLKAMPPKLLSDDGRNVVIRPLAY 183

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
           C   DI ++   +       P N     +    R+ V+++          + + +   + 
Sbjct: 184 CSEADIEAYSKMKEFPII--PCNLCGS-QENLQRQVVKEMLQEWERKSPGRTEIMFRALQ 240

Query: 232 NAVAMLIPKYLTVHMRSI 249
           N V   +        +S+
Sbjct: 241 NVVPSQLADRNLFDFKSL 258


>gi|323483399|ref|ZP_08088787.1| hypothetical protein HMPREF9474_00536 [Clostridium symbiosum
           WAL-14163]
 gi|323691102|ref|ZP_08105382.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673]
 gi|323403253|gb|EGA95563.1| hypothetical protein HMPREF9474_00536 [Clostridium symbiosum
           WAL-14163]
 gi|323504799|gb|EGB20581.1| PP-loop domain-containing protein [Clostridium symbiosum WAL-14673]
          Length = 303

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%)

Query: 10  RFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           R FV++L          +I V +SGG DSM L   +  +L      +     + +D    
Sbjct: 48  RPFVKALNEYDMIKEGDNIAVCISGGKDSMLLAKCMQEILR-HGKMEFGLHFLVMDPGYN 106

Query: 64  ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
              +   R + +    + I  ++    +                  R   +  +AK +  
Sbjct: 107 PANR---RMIEENAKTMNIPVTIFDSDIFDVVVDVDQSPCYLCARMRRGFLYANAKKLGC 163

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I   H FDD +ET+ M          M       +  ++  + + RP    +  DI +
Sbjct: 164 NKIALGHHFDDVIETILMSMLYGAQVNTM--MPKLHSTNFE-GMELIRPLYLVKEADILA 220

Query: 180 FLLQRNISW 188
           +     + +
Sbjct: 221 WKDYNGLRF 229


>gi|168230078|ref|ZP_02655136.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
 gi|194471984|ref|ZP_03077968.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|194458348|gb|EDX47187.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|205335366|gb|EDZ22130.1| YdaO [Salmonella enterica subsp. enterica serovar Kentucky str. CDC
           191]
          Length = 311

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDII 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|238792248|ref|ZP_04635883.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia intermedia
           ATCC 29909]
 gi|238728485|gb|EEQ20004.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia intermedia
           ATCC 29909]
          Length = 297

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 20/190 (10%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +++    +++A  SGG DS  +L  L  +        IKF  I+V+  L +       ++
Sbjct: 32  NMIEDNDVVMACMSGGKDSFAMLDILLGLQK---VAPIKFEVIAVN--LDQKQPGFPEHI 86

Query: 74  S-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  L I + +V                         R   +   A+ I AT I   
Sbjct: 87  LPAYLESLNIPYYIVDKDTYSVVKEKIPEGKTTCGLCSRLRRGTLYSFAEKIGATKIALG 146

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD +ET+++        K M           D    + RP   CR +D+  +   + 
Sbjct: 147 HHMDDIVETLFLNIFHGARMKAM----PPKLRSDDGRNIVIRPLAYCREKDLIKYSEYKT 202

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 203 FPII--PCNL 210


>gi|294667509|ref|ZP_06732725.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602738|gb|EFF46173.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 306

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 77/243 (31%), Gaps = 22/243 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     I+V +SGG DS  LL  L  +        + FS ++V+  L +   D   +V  
Sbjct: 48  IAPGDKIMVCLSGGKDSYTLLDMLLRLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102

Query: 75  DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L +   +V                 + +     R   +  +A+T   T I   H 
Sbjct: 103 AYLRGLGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186
            DD + T +M            L+ M   +  D     + RP    R  DI ++   R  
Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
                P N     +    R+ V  +       +  + + +   + +     +        
Sbjct: 218 PII--PCNLCGS-QENLQRQQVGKMLQQWNREQPGRVEQIARALGDVRPEQLADRTLFDF 274

Query: 247 RSI 249
            ++
Sbjct: 275 LAL 277


>gi|304439167|ref|ZP_07399085.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372299|gb|EFM25887.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 276

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 12/175 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I VA+SGG DS+ L      +   + F       I++D   ++   D++ Y    C
Sbjct: 40  KGDKIAVAISGGKDSLTLAKLFQELKKHKKF-DFDLEFIAMDPGYKKEKLDQMLYN---C 95

Query: 78  SRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +L I   V                        R   +   A+ +    +   H FDD +
Sbjct: 96  EKLGIPVKVHQSDIFEVSERIAGENPCYMCARMRRGNLYAKAQELGCNKLALGHHFDDVI 155

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           ETV +     +A     +        ++ N+ + RP      E I  F+    ++
Sbjct: 156 ETVMLNII--FAGDFKTMMPKLKAQNFE-NMELIRPMYLIEEESIIRFMKSTGLT 207


>gi|52840935|ref|YP_094734.1| C32 tRNA thiolase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81378004|sp|Q5ZXN3|TTCA_LEGPH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|52628046|gb|AAU26787.1| hypothetical protein lpg0698 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 283

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L+ +   +S  K +  A ++D   +         +  
Sbjct: 26  IQRGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQ 81

Query: 76  VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             +   I H +++                  +     R  +I  +A+      I   H  
Sbjct: 82  WLAEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187
           DD + T+ M    +   +      M   +L D    I  RP    + +DI +F  ++   
Sbjct: 142 DDLVRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFP 196

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH 214
               P N     +   +R+ V  +   
Sbjct: 197 II--PCNLCGS-QENLMRKKVASLIDQ 220


>gi|319940761|ref|ZP_08015101.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805781|gb|EFW02557.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Sutterella
           wadsworthensis 3_1_45B]
          Length = 311

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 17/175 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+VA+SGG DS  LL  L  +L  R+       A++V   +      E   +     
Sbjct: 67  GDKIMVAMSGGKDSYVLLDTLK-ILQARAPIHFDLLAVNVHQHI-PEFPLEA--LKKHLE 122

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I   +     +            + +     R  ++   A+      I   H  DD 
Sbjct: 123 HSGIPFHIEDQDTNSLIQKLIPEGKNVCSLCARLRRGILYRVARETGCNRIALGHHMDDI 182

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRN 185
           + T+ +         G  L  M   +  D     + RP    R  +       R 
Sbjct: 183 VSTLLLNLF-----YGGRLKSMPPALKNDRGDCVVIRPLAYVREAETAKMAKIRG 232


>gi|91774584|ref|YP_544340.1| PP-loop [Methylobacillus flagellatus KT]
 gi|123254878|sp|Q1H4T8|TTCA_METFK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|91708571|gb|ABE48499.1| PP-loop [Methylobacillus flagellatus KT]
          Length = 303

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 90/245 (36%), Gaps = 19/245 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ILV +SGG DS  +L+ L ++  +R+    K  A+++D   ++        +     +L 
Sbjct: 40  ILVCMSGGKDSYTMLMMLLALQ-ERAPVNFKLIAMNLD---QKQPGFPAHILPAYLEQLG 95

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           + H +V                   +     R  +I   A+ + A  I   H  DD +ET
Sbjct: 96  VDHRIVEADTYSIVKEKIPEGKTTCSLCSRLRRGIIYRTAQELGANKIALGHHRDDIVET 155

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWC-EDP 192
           +++         G  +  M   +  +     + RP   C  +DI S+    +      D 
Sbjct: 156 LFLNMF-----FGAKMKAMPPKLATNKGEFHVIRPLAYCAEKDIASYARGMDFPIIPCDL 210

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
             + +  +R +V+  ++  +          F+ +     + +A     Y   HM    A 
Sbjct: 211 CGSQENLQRQKVKDMLQAWEREQPGRVNNIFRAICNVEPSHLADT-DLYDFKHMSQSKAE 269

Query: 253 SQDIL 257
            +D L
Sbjct: 270 DEDPL 274


>gi|15596389|ref|NP_249883.1| hypothetical protein PA1192 [Pseudomonas aeruginosa PAO1]
 gi|107100641|ref|ZP_01364559.1| hypothetical protein PaerPA_01001667 [Pseudomonas aeruginosa PACS2]
 gi|116049140|ref|YP_792058.1| ATPase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218892831|ref|YP_002441700.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa
           LESB58]
 gi|254234325|ref|ZP_04927648.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|313106167|ref|ZP_07792420.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa
           39016]
 gi|81541550|sp|Q9I4E6|TTCA_PSEAE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|122258248|sp|Q02J28|TTCA_PSEAB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790134|sp|B7UWY4|TTCA_PSEA8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|9947118|gb|AAG04581.1|AE004549_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115584361|gb|ABJ10376.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166256|gb|EAZ51767.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218773059|emb|CAW28871.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa
           LESB58]
 gi|310878922|gb|EFQ37516.1| putative ATPase of the PP-loop superfamily [Pseudomonas aeruginosa
           39016]
          Length = 274

 Score = 86.1 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 34/246 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS  +L  L  +        I+F  ++V+          H L      
Sbjct: 32  GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPGFPEHVL------ 82

Query: 69  EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +     I     +SVV  K  + +T   +     R   +   A  I AT +  
Sbjct: 83  -PEYLKSIGVEYHIVEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADEIGATKMAL 140

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183
            H  DD LET ++         G  L  M   +L D     + RP   C  +DI ++   
Sbjct: 141 GHHRDDILETFFLNMF-----YGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQL 195

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           +       P N     +    R+ V+++ L        + + +   + N V   +     
Sbjct: 196 KEFPII--PCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNL 252

Query: 244 VHMRSI 249
               ++
Sbjct: 253 FDFANL 258


>gi|330834210|ref|YP_004408938.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566349|gb|AEB94454.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 316

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 95/244 (38%), Gaps = 27/244 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRY 72
           ++L+    IL+AVSGG DS+ L   L  +++       +  A ++   ++    +D+VR 
Sbjct: 42  QNLLNANKILIAVSGGKDSLVLADTLSKIVNPN-----RIVAFNIVEGIKGYNREDQVRE 96

Query: 73  VSDVCSRLRIAHSVVSWK-----------NSKPQTGLMAAARE----ARYALISEHAKTI 117
           +S+    L I     S++            S  Q GL  AA       R  LI+   + +
Sbjct: 97  LSNYLKELGIDLISTSFEKSVGYTLDQMVKSSSQRGLNVAACTFCGGFRRKLINGAGREV 156

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           NA  + T H  DD+++T+ +   R   +K + + G     L +  +   +P  +    + 
Sbjct: 157 NADFVSTGHNLDDEVQTIIINLLRGDVKKLLRI-GDSQPKLSEKFVMRVKPLRKVYEWET 215

Query: 178 RSFLLQRNISWCEDPSNTDDR--FERVRVRRF---VRDIDLHALYLKMKKFQDLRVKVNN 232
             +   +   + E            R +VR     + +    AL   ++ F  L   +  
Sbjct: 216 TMYAYFKGFHFQEVECPYISAKPTMRAKVRDLLYALEERSPGALLQILENFDSLAESIRK 275

Query: 233 AVAM 236
              +
Sbjct: 276 GTKL 279


>gi|221134474|ref|ZP_03560779.1| ATPase of the PP-loop superfamily protein [Glaciecola sp. HTCC2999]
          Length = 288

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 77/226 (34%), Gaps = 24/226 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L  +        I F+  +V+   ++        + +  +
Sbjct: 27  GDRVMVCLSGGKDSYTMLDNLLYLQ---QVAPINFAIFAVN-LDQKQPGFPAHILPEYLT 82

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  I H +V+                  A     R A++   AK   AT I   H  DD 
Sbjct: 83  QRDIEHYIVTEDTYSIVKEKTPEGKTTCALCSRLRRAILYRTAKEYGATKIALGHHRDDM 142

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           LET+ +         G  L  M   ++ D     + RP   C   DI  +   +      
Sbjct: 143 LETLLLNMF-----HGGQLKSMPPKLVSDNGEHVVIRPLAFCAESDIAQYSQIQQYPII- 196

Query: 191 DPSNTDDRFERVRVRRFVRDI--DLHALYLKMKKFQDLRVKVNNAV 234
            P N     +    R+ ++ +  D H  +    +   +   +   V
Sbjct: 197 -PCNLCGS-QENLQRKQIKMMLQDWHERFPT--RIASMAKSLQQVV 238


>gi|317062669|ref|ZP_07927154.1| PP family ATPase [Fusobacterium ulcerans ATCC 49185]
 gi|313688345|gb|EFS25180.1| PP family ATPase [Fusobacterium ulcerans ATCC 49185]
          Length = 292

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 16/190 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++V+ F  +L+     I V VSGG DS+ L      +  DRS    + + IS++   
Sbjct: 47  KFVKAVKDF--NLIEDGDRIAVGVSGGKDSLLLCKLFQEMKKDRS-KNFEVAFISMNPGF 103

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTI 117
              A D  ++       L I   V           +          + R  ++    + +
Sbjct: 104 --GAMDMEQF-KSNLEELEIPCEVFEANVWEIAFKENPESPCFLCAKMRRGVLYNKVEEL 160

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +         G   + +         + + RP +  + +DI
Sbjct: 161 GYNKLALGHHFDDVVETTMINMF----YAGTVKTMIPKVKSTSGKMELIRPMVYIKEKDI 216

Query: 178 RSFLLQRNIS 187
            ++  +  I 
Sbjct: 217 IAYTQRNEIE 226


>gi|257468396|ref|ZP_05632490.1| PP family ATPase [Fusobacterium ulcerans ATCC 49185]
          Length = 267

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 16/190 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++V+ F  +L+     I V VSGG DS+ L      +  DRS    + + IS++   
Sbjct: 22  KFVKAVKDF--NLIEDGDRIAVGVSGGKDSLLLCKLFQEMKKDRS-KNFEVAFISMNPGF 78

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTI 117
              A D  ++       L I   V           +          + R  ++    + +
Sbjct: 79  --GAMDMEQF-KSNLEELEIPCEVFEANVWEIAFKENPESPCFLCAKMRRGVLYNKVEEL 135

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +         G   + +         + + RP +  + +DI
Sbjct: 136 GYNKLALGHHFDDVVETTMINMF----YAGTVKTMIPKVKSTSGKMELIRPMVYIKEKDI 191

Query: 178 RSFLLQRNIS 187
            ++  +  I 
Sbjct: 192 IAYTQRNEIE 201


>gi|281203415|gb|EFA77615.1| hypothetical protein PPL_12222 [Polysphondylium pallidum PN500]
          Length = 636

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/375 (14%), Positives = 114/375 (30%), Gaps = 112/375 (29%)

Query: 22  ILVAVSGGSDS---------------------MGLLIALHSVLSDRSFGKIKFSAISVDH 60
           I+ AVSGG+DS                     M L   L    +      I   A+++DH
Sbjct: 157 IIAAVSGGADSICNLSYLMNYCYFYRNDVVYSMALCFLLKGWCNRHG---ISLVAVTIDH 213

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            L   ++D V    ++  ++      +  K     +G+                      
Sbjct: 214 GLVPPSEDIVAIAENI-RKIDADIQHIVVKIDWFGSGVE--------------------- 251

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
                                       GL+GM  T+    N  I RP L   ++++   
Sbjct: 252 ----------------------------GLAGMQPTLPLA-NASIYRPLLNIGKDELFGL 282

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDI----------------------------- 211
               N+ +  D +N    FER R+R  +  +                             
Sbjct: 283 CNAYNLRYTHDQANNLTTFERNRIRLALSKLLCSSSGNSGQQHDHSNNNSSNNSSPSIVQ 342

Query: 212 --DLHALYLKMKKFQ-DLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLL 268
             D + +    ++F+  +  +V  +V  L     ++ +         I  + + +   LL
Sbjct: 343 LKDFNNVLSIFREFRYSIEEQVMASVRELYNSSFSLELPMFRVDVDRIKKLSAPIGCRLL 402

Query: 269 RVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA---VRNL 325
              + I  G      ++    +   + SG+    ++ +++   + N ++I          
Sbjct: 403 YQLSMIINGDYEKFRHQDYASLYRSVVSGQ--TRTLNQIIFYTQQNHIYIHPESHSSAKQ 460

Query: 326 PTLILYPEETTVWDG 340
              I+  ++  + DG
Sbjct: 461 AKRIVIEQQRHLRDG 475


>gi|168462890|ref|ZP_02696821.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|194443213|ref|YP_002040903.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|198242873|ref|YP_002215492.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205352663|ref|YP_002226464.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207856831|ref|YP_002243482.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|254790139|sp|B5FUP1|TTCA_SALDC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790140|sp|B5R4D8|TTCA_SALEP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790141|sp|B5RA25|TTCA_SALG2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790143|sp|B4T6P5|TTCA_SALNS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|16611693|gb|AAL27304.1|AF370716_7 YdaO [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|194401876|gb|ACF62098.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|195633936|gb|EDX52288.1| YdaO [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|197937389|gb|ACH74722.1| YdaO [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205272444|emb|CAR37331.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206708634|emb|CAR32956.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326623238|gb|EGE29583.1| YdaO [Salmonella enterica subsp. enterica serovar Dublin str. 3246]
 gi|326627729|gb|EGE34072.1| YdaO [Salmonella enterica subsp. enterica serovar Gallinarum str.
           9]
          Length = 311

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|52425142|ref|YP_088279.1| MesJ protein [Mannheimia succiniciproducens MBEL55E]
 gi|81387134|sp|Q65TL6|TTCA_MANSM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|52307194|gb|AAU37694.1| MesJ protein [Mannheimia succiniciproducens MBEL55E]
          Length = 312

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++  +         A+++D   +        ++  +  
Sbjct: 40  GDKVMVCLSGGKDSYTLLDILLNLRHNAPV-HFDIVAVNLD-QKQPG---FPEHILPEYL 94

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
           S + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 95  SSIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 154

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++        K    S     +  D    + RP   C+ +DI  + + +      
Sbjct: 155 MLETLFLNMFYGGKLK----SMPPKLVSDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII- 209

Query: 191 DPSNT 195
            P N 
Sbjct: 210 -PCNL 213


>gi|149920545|ref|ZP_01909012.1| ATPase [Plesiocystis pacifica SIR-1]
 gi|149818589|gb|EDM78035.1| ATPase [Plesiocystis pacifica SIR-1]
          Length = 310

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 12/231 (5%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L  +  +      +     I+VA+SGG DS  LL  L +      F   +  A+++D  
Sbjct: 27  LLRQMSRLNRRFDLIAPDDTIMVAISGGKDSWALLHLLRAYKRVVPF-DYELVAVNLD-Q 84

Query: 62  LRETAKDEV--RYVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                  EV   ++       R+ H     V   N+K      +     R  ++ + A  
Sbjct: 85  GHPGFPVEVLRAHLEAEGFAYRLVHRDTHSVVKANTKAGKAYCSLCSRLRRGILYDVAVE 144

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + AT I   H  DD +ET+ +         G   +        D    I RP   C   D
Sbjct: 145 LGATKIALGHHRDDVVETLMLNLF----YAGQLKAMPPKLRSDDGRNVIIRPLGTCAEAD 200

Query: 177 IRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           I  +    N      D   +    +R +++  +  ++     L+      +
Sbjct: 201 IARYAALANFPIVPCDLCGSQPNLKRQQMKALLTQLEGDNPLLRKNMLAAV 251


>gi|148360650|ref|YP_001251857.1| hypothetical protein LPC_2596 [Legionella pneumophila str. Corby]
 gi|205830599|sp|A5IGL1|TTCA_LEGPC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|148282423|gb|ABQ56511.1| hypothetical protein LPC_2596 [Legionella pneumophila str. Corby]
          Length = 283

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 20/205 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +   ++V +SGG DS  LL  L+ +   +S  K +  A ++D   +         +    
Sbjct: 28  HGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQWL 83

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   I H +++                  +     R  +I  +A+      I   H  DD
Sbjct: 84  AEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHRDD 143

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            + T+ M    +   +      M   +L D    I  RP    + +DI +F  ++     
Sbjct: 144 LIRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFPII 198

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH 214
             P N     +   +R+ V  +   
Sbjct: 199 --PCNLCGS-QENLMRKKVASLIDQ 220


>gi|225386687|ref|ZP_03756451.1| hypothetical protein CLOSTASPAR_00435 [Clostridium asparagiforme
           DSM 15981]
 gi|225047214|gb|EEG57460.1| hypothetical protein CLOSTASPAR_00435 [Clostridium asparagiforme
           DSM 15981]
          Length = 289

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 17/189 (8%)

Query: 10  RFFVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           R FV+ L           I V +SGG DSM LL      L   S    +   I +D    
Sbjct: 23  RPFVKGLQAYEMIADGDRIAVCISGGKDSM-LLAKCMQELKRHSKTNFELEFIVMDPGYN 81

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINA 119
              +   R + +  + + I   +                       R   + + A+++  
Sbjct: 82  PANR---RLIEENAALMNIPVQIFESDIFDAVVDVDQSPCYLCARMRRGYLYDRARSLGC 138

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I   H +DD +ET+ M          M +  +  T      + + RP    +  DI  
Sbjct: 139 NKIALGHHYDDVIETILMSMLYGGQVNTM-MPKLHSTNFP--GMELIRPLYFVKEGDILD 195

Query: 180 FLLQRNISW 188
           +     + +
Sbjct: 196 WKDYNGLHF 204


>gi|296390437|ref|ZP_06879912.1| putative ATPase of the PP-loop superfamily protein [Pseudomonas
           aeruginosa PAb1]
          Length = 274

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 24/241 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  +L  L  +        I+F  ++V+    +        +V  + 
Sbjct: 32  GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPG---FPEHVLPEY 85

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              + + + +V                   +     R   +   A  I AT +   H  D
Sbjct: 86  LKSIGVEYHIVEKDTYSMVKEKIPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHHRD 145

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D LET ++         G  L  M   +L D     + RP   C  +DI ++   +    
Sbjct: 146 DILETFFLNMF-----YGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQLKEFPI 200

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
              P N     +    R+ V+++ L        + + +   + N V   +         +
Sbjct: 201 I--PCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNLFDFAN 257

Query: 249 I 249
           +
Sbjct: 258 L 258


>gi|164686251|ref|ZP_02210281.1| hypothetical protein CLOBAR_02689 [Clostridium bartlettii DSM
           16795]
 gi|164601853|gb|EDQ95318.1| hypothetical protein CLOBAR_02689 [Clostridium bartlettii DSM
           16795]
          Length = 287

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---- 59
             I++++ + + +     I VA+SGG DS   L+        +  G++KF  + +     
Sbjct: 39  KFIKAIKDY-KLVEEGDKIAVAISGGKDS---LLMAKMFQELQKHGQVKFDLVFLAMDPG 94

Query: 60  -H-CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA-----AAREARYALISE 112
            H  +R       + + + C  L I  ++           +            R   +  
Sbjct: 95  YHKNIR-------QLLEENCEYLNIPLTIFDTNIFDVAGEIAEDYPCYMCARMRRGALYN 147

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+ +    +   H FDD +ET  +            L  +  +    +   I RP    
Sbjct: 148 KAEELGCNKLALGHHFDDVIETTMLNLL-CAGNFKTMLPKLKSSNYEKMQ--IIRPLYYI 204

Query: 173 RREDIRSFLLQRNI 186
           R E I  F+    I
Sbjct: 205 REESIIRFIQNSGI 218


>gi|123442369|ref|YP_001006348.1| C32 tRNA thiolase [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|205830671|sp|A1JND8|TTCA_YERE8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|122089330|emb|CAL12178.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 313

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 84/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++            A+++D   +    +++        
Sbjct: 39  GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD-QKQPGFPEDILPA--YLD 94

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 95  KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAIAREYPII-- 208

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +             +
Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKNITHN 268

Query: 249 IIAISQDILNIDSTLL 264
              +    L  D   L
Sbjct: 269 SEIVDGGDLAFDREEL 284


>gi|54293682|ref|YP_126097.1| hypothetical protein lpl0735 [Legionella pneumophila str. Lens]
 gi|81369111|sp|Q5WYK1|TTCA_LEGPL RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|53753514|emb|CAH14969.1| hypothetical protein lpl0735 [Legionella pneumophila str. Lens]
          Length = 283

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L+ +   +S  K +  A ++D   +         +  
Sbjct: 26  IQRGDKVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQ 81

Query: 76  VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             +   I H +++                  +     R  +I  +A+      I   H  
Sbjct: 82  WLAEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187
           DD + T+ M    +   +      M   +L D    I  RP    + +DI +F  ++   
Sbjct: 142 DDLVRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFP 196

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH 214
               P N     +   +R+ V  +   
Sbjct: 197 II--PCNLCGS-QENLMRKKVASLIDQ 220


>gi|262042928|ref|ZP_06016073.1| PP-loop family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039768|gb|EEW40894.1| PP-loop family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 326

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 87/267 (32%), Gaps = 23/267 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 43  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQKSAPIS-FSLVAVNLD-QKQPG- 98

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                ++      +L + + +V                   +     R  ++   A  + 
Sbjct: 99  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 156

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 157 ATKIALGHHRDDILQTLFLNIFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 212

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + ++
Sbjct: 213 RFSQAKGFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 270

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDST 262
            +              +    L  D  
Sbjct: 271 DVNLFDFKGITHGSEVVDGGDLAFDRE 297


>gi|238917758|ref|YP_002931275.1| hypothetical protein EUBELI_01839 [Eubacterium eligens ATCC 27750]
 gi|238873118|gb|ACR72828.1| Hypothetical protein EUBELI_01839 [Eubacterium eligens ATCC 27750]
          Length = 412

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 41/209 (19%)

Query: 2   FLSPIESVRFFVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           F  PI   R F ++L           I V +SGG DSM +      +   +  GK  F  
Sbjct: 132 FRKPI--WRKFTQALNEYDLIQDGDKIAVCISGGKDSMLMAKLFQEL---KRHGKNNFEL 186

Query: 56  I---------SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAA 102
           +         ++++ +          + +    L I  +V   +     +  +       
Sbjct: 187 VFLVMNPGYNNINYQV----------ILNNAKILDIPITVFKSEIFDTVADIEESPCYLC 236

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY--D 160
              R   +   AK +    I   H +DD +ET+ M         G  +  M   +     
Sbjct: 237 ARMRRGYLYSKAKELGCNKIALGHHYDDVIETILMGML-----YGAQIQTMMPKLHSTNF 291

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC 189
             + + RP    R  DI  +    N+++ 
Sbjct: 292 EGMELIRPLYLIREADIIHWRDYNNLAFI 320


>gi|307609493|emb|CBW98990.1| hypothetical protein LPW_07751 [Legionella pneumophila 130b]
          Length = 283

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L+ +   +S  K +  A ++D   +         +  
Sbjct: 26  IQRGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQ 81

Query: 76  VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             +   I H +++                  +     R  +I  +A+      I   H  
Sbjct: 82  WLAEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187
           DD + T+ M    +   +      M   +L D    I  RP    + +DI +F  ++   
Sbjct: 142 DDLIRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFP 196

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH 214
               P N     +   +R+ V  +   
Sbjct: 197 II--PCNLCGS-QENLMRKKVASLIDQ 220


>gi|189236796|ref|XP_969974.2| PREDICTED: similar to Y71H2B.5 [Tribolium castaneum]
 gi|270006241|gb|EFA02689.1| hypothetical protein TcasGA2_TC008410 [Tribolium castaneum]
          Length = 1280

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 102/256 (39%), Gaps = 25/256 (9%)

Query: 6    IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCLR 63
            +E+++ F   +    +++V +SGG DS+ LL  L    +      I     A++VD    
Sbjct: 1013 MEAIQEF-EMIKDGDNVMVCLSGGKDSLSLLHTLLQFQNYAQNKGILFSLGAVTVD---P 1068

Query: 64   ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREARYAL--------ISEH 113
            +T+  +   +      L + H ++  K S P         A+E  Y+         +   
Sbjct: 1069 DTSGCDPCILIPHLRSLGV-HYIIDDKKSDPGDESEQREEAKENLYSFCTSSVRRRLYSA 1127

Query: 114  AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            AK+    ++      DD  E  ++        +    +      + D  L + RPF+  R
Sbjct: 1128 AKSSGYNVLAIGQHLDDLCENFFLSVFHTGRLR----TMRAHYYIKDHKLRVIRPFVYVR 1183

Query: 174  REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
             + +R F+  +N+    +    D   ER R+++ +   ++  L+ K+  F  LR  ++  
Sbjct: 1184 EKYLRQFVSNQNLPVSANVCGPDLTKERQRIKQVLTQQEI--LFPKL--FTSLRSALHPL 1239

Query: 234  VAMLIPKYLTVHMRSI 249
            +   I +    + R +
Sbjct: 1240 IGFQIKECEVKYRRRL 1255


>gi|54296722|ref|YP_123091.1| C32 tRNA thiolase [Legionella pneumophila str. Paris]
 gi|81371023|sp|Q5X752|TTCA_LEGPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|53750507|emb|CAH11901.1| hypothetical protein lpp0753 [Legionella pneumophila str. Paris]
          Length = 283

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 20/207 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L+ +   +S  K +  A ++D   +         +  
Sbjct: 26  IQRGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQ 81

Query: 76  VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             +   I H +++                  +     R  +I  +A+      I   H  
Sbjct: 82  WLAEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 141

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187
           DD + T+ M    +   +      M   +L D    I  RP    + +DI +F  ++   
Sbjct: 142 DDLIRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFP 196

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLH 214
               P N     +   +R+ V  +   
Sbjct: 197 II--PCNLCGS-QENLMRKKVASLIDQ 220


>gi|294341575|emb|CAZ89992.1| Putative N-TYPE ATP PYROPHOSPHATASE ydaO [Thiomonas sp. 3As]
          Length = 334

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 57/177 (32%), Gaps = 15/177 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ++V +SGG DS  LL  L S+  +R+       A+++D   +     EV    D  
Sbjct: 73  QGDKVMVCMSGGKDSYALLDILLSL-RERAPIDFDLVAVNLD-QKQPGFPQEVLP--DYL 128

Query: 78  SRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDD 130
               +   +           +              R  ++   A  + AT I   H  DD
Sbjct: 129 KSRGVPFHIEEQDTYSIVKSIIPEGKTTCGLCSRLRRGILYRVAGELGATKIALGHHRDD 188

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            LET ++        KGM        +  D    + RP       D+  +   R   
Sbjct: 189 ILETFFLNLFFGGKLKGM----PPKLVSDDGKHVVIRPLAYVEETDLERWAELRAFP 241


>gi|294668241|ref|ZP_06733348.1| tRNA(Ile)-lysidine synthase [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291309949|gb|EFE51192.1| tRNA(Ile)-lysidine synthase [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 137

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          L +  HI  A+SGG DS+ LL  L  +        IK +A+ V H L++ A   + +  D
Sbjct: 16 LSHARHIEAALSGGLDSVVLLHLLSRLA---GRLNIKLTAVHVHHGLQDEADGWLEFCRD 72

Query: 76 VCSRLRIAHS 85
           C+RL +   
Sbjct: 73 YCARLAVPLR 82


>gi|149203004|ref|ZP_01879975.1| PP-loop [Roseovarius sp. TM1035]
 gi|149143550|gb|EDM31586.1| PP-loop [Roseovarius sp. TM1035]
          Length = 289

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 15/177 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +      LV +SGG DS  LL  L+ +   R    ++  A ++D   +         + D
Sbjct: 42  IAPGGKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVELLACNLD---QGQPGFPATVLPD 97

Query: 76  VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
             SR+++ H +       +            A     R   +   A+    T ++  H  
Sbjct: 98  FLSRMQVPHRIEYQDTYSIVMDKVPAGRTYCALCSRLRRGNLYRIAREEGCTAVVLGHHR 157

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           DD LET +M         G   +     +  + +L++ RP      ED   F    N
Sbjct: 158 DDILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEEDCERFARAMN 210


>gi|296106286|ref|YP_003617986.1| hypothetical protein lpa_01086 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648187|gb|ADG24034.1| hypothetical protein lpa_01086 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 283

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 20/205 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ++V +SGG DS  LL  L+ +   +S  K +  A ++D   +         +    
Sbjct: 28  RGDRVMVCLSGGKDSFTLLTILNQL-RIKSGNKFEIFAFTLD---QAQPGWNDACLRQWL 83

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   I H +++                  +     R  +I  +A+      I   H  DD
Sbjct: 84  AEKSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHRDD 143

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            + T+ M    +   +      M   +L D    I  RP    + +DI +F  ++     
Sbjct: 144 LIRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQEKDIITFASEQAFPII 198

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLH 214
             P N     +   +R+ V  +   
Sbjct: 199 --PCNLCGS-QENLMRKKVASLIDQ 220


>gi|161503260|ref|YP_001570372.1| C32 tRNA thiolase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|205830622|sp|A9MQT5|TTCA_SALAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|160864607|gb|ABX21230.1| hypothetical protein SARI_01329 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 311

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQDIVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGIAHGSEVVDGGDLAFDREEI 284


>gi|295100762|emb|CBK98307.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Faecalibacterium prausnitzii L2-6]
          Length = 288

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 59/195 (30%), Gaps = 27/195 (13%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVR 71
               I V +SGG DSM +   +  +         +   + +D    E       +  E+ 
Sbjct: 39  AGDKIAVCISGGKDSMLMAKLMQELQRHSDVP-FELVFLVMDPGYNEINRQKIESNAEL- 96

Query: 72  YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                   L I  ++         +             R   +   A+ +    I   H 
Sbjct: 97  --------LHIPVTIFESNIFSVANNTDKNPCYLCARMRRGHLYSKARELGCNKIALGHH 148

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           F+D +ET  M        +   +  M  +  +   + + RP    R EDI ++     + 
Sbjct: 149 FNDVIETTVMSMFYGSQLQ--AMPPMLHSTSFP-GMTLIRPMYCIREEDILAWKRYNELE 205

Query: 188 WCEDPSNTDDRFERV 202
           + +       RF   
Sbjct: 206 FIQCAC----RFTEN 216


>gi|264680405|ref|YP_003280315.1| PP-loop [Comamonas testosteroni CNB-2]
 gi|262210921|gb|ACY35019.1| PP-loop [Comamonas testosteroni CNB-2]
          Length = 330

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 83/257 (32%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L  +   R+  K    A+++D   +        +V  +  
Sbjct: 69  GDRVMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPEYF 123

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +       V  +               R A++ + A  +  T +   H  DD
Sbjct: 124 QSIGVDYHIENQDTYSVVKRVVPEGKTTCGLCSRLRRAILYKVADQLGCTKVALGHHRDD 183

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ++T+ +        KGM        +  D    + RP      +D   +   +N     
Sbjct: 184 IVQTMMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTTRWAQYQNFPII- 238

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N     D  +RV V   +R+ D          F+ +   V   +             
Sbjct: 239 -PCNLCGSQDGLQRVAVGNMLREWDKKFPGRIESMFRAMGNIVTTHMMDPQLHDFRNAKA 297

Query: 248 SIIAISQDILNIDSTLL 264
           + IA     +  D   L
Sbjct: 298 TGIADPNGDMAFDHEEL 314


>gi|296102189|ref|YP_003612335.1| C32 tRNA thiolase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056648|gb|ADF61386.1| C32 tRNA thiolase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 311

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 94/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++       K    A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-KFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++  +   +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPEYLDKLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + +A
Sbjct: 198 RFSQAKAFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            +              ++   L  D   +
Sbjct: 256 DVELFDFKGINHDSEVVNGGDLAFDREEI 284


>gi|302038685|ref|YP_003799007.1| putative P-loop ATPase [Candidatus Nitrospira defluvii]
 gi|300606749|emb|CBK43082.1| putative PP-loop ATPase, YdaO type [Candidatus Nitrospira defluvii]
          Length = 305

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 29/199 (14%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +++ F +       ILVAVSGG DS+ L   L ++         +  A+ V+  +   ++
Sbjct: 30  AIKSF-KMFTPEDRILVAVSGGKDSLALWHILLAL-------GYRADALYVNLGIGGYSE 81

Query: 68  DEVRYVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREA------------RYALISE 112
           +  R V      +  AH    +V     +   G+   A               RY   + 
Sbjct: 82  ESHRKVRHYADTVAAAHGAKLIVHVVEQEAGAGIRELATILHRPTCSTCGTIKRYQ-FNR 140

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFL 170
            A   +  ++ T H  DD+   +         E    L     T+   +  +    +P  
Sbjct: 141 AAVEQDYDVMATGHNLDDEAARLLGNVLHWQDEY---LDKQSPTLPASVEGFAKKVKPLC 197

Query: 171 RCRREDIRSFLLQRNISWC 189
           R    +I ++ +   I + 
Sbjct: 198 RLSEREIAAYAVVNRIDYI 216


>gi|225684431|gb|EEH22715.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 1416

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 120/365 (32%), Gaps = 90/365 (24%)

Query: 96  TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR-------------- 141
           +    +AR+ RY ++    K  N   +   H  DD +ETV  R  R              
Sbjct: 22  SNFETSARKYRYQMLGHACKEYNIQALFLGHHQDDTVETVLSRLVRGQRQASGFTGVASV 81

Query: 142 DYAEKGMGLSGMCDTILY------------------------------------------ 159
            +  +  G+ G+ ++  +                                          
Sbjct: 82  GHIPECHGIYGLAESGSFIKLKNVKSRIDPAGRHPVHDRERPDESQLKQAWGIDSNTPHS 141

Query: 160 --------DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRD 210
                   D  +++ RPF    +  + S  LQ NI +  D +N D     R  +R  + +
Sbjct: 142 NDILLPISDGGIYLFRPFSSFPKSRLTSTCLQNNIKFAIDKTNFDPTVTSRNTLRYLLSN 201

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI------LNIDSTLL 264
             L    L+      L    +  V+  + +   + +R    I  D+      +N  +  L
Sbjct: 202 DMLPR-ALRAPSILQLIEN-SKQVSEELNRQSNIFLRKSQIIKLDLRTGSLVINFPNPRL 259

Query: 265 FYLLRVSAAICGGQISLPGYRS----MERVMLFLKSGKRGCVSIGRVVIDRRANFLWI-- 318
                VS     G  S+   ++    + R +  +  G++  V   +    + A  +    
Sbjct: 260 IQNFGVSLDDPVGPASVMTQKAMVITLRRFLDVILPGQKNHVPFHKF---KSALQIIFPA 316

Query: 319 TRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP---SGIPPIIAQR 375
           + A+ +    + + +   +WD RY  +  ++ +    P++Y   + P      P  +  R
Sbjct: 317 SEAINDHVDSVTWSDWQ-LWDNRYWIRLGAEKV----PRTYPIEEWPYEYRDTPVPLVVR 371

Query: 376 ALSSM 380
            + S+
Sbjct: 372 PMKSL 376


>gi|195941077|ref|ZP_03086459.1| C32 tRNA thiolase [Escherichia coli O157:H7 str. EC4024]
 gi|295095744|emb|CBK84834.1| tRNA s(2)C-32 sulfurtransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 311

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 92/269 (34%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++  +    L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPEYLENLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + +A
Sbjct: 198 RFSQAKAFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            +              ++   L  D   +
Sbjct: 256 DVELFDFKGINHGSEVVNGGDLAFDREEI 284


>gi|157370847|ref|YP_001478836.1| C32 tRNA thiolase [Serratia proteamaculans 568]
 gi|205830624|sp|A8GF18|TTCA_SERP5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|157322611|gb|ABV41708.1| PP-loop domain protein [Serratia proteamaculans 568]
          Length = 310

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 22/255 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        ++     
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHILPAYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V        K+  P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  ESLGVEYQIVEENTYSIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F + +      
Sbjct: 154 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFSVAKGFPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F  ++  V + ++            
Sbjct: 209 -PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRLETMFSAMQNVVPSHLSDYNLFDFKGIHH 267

Query: 248 SIIAISQDILNIDST 262
               +    L  D  
Sbjct: 268 GSEVVDGGDLAFDRE 282


>gi|206602942|gb|EDZ39422.1| probable ATPase, PP-loop superfamily [Leptospirillum sp. Group II
           '5-way CG']
          Length = 307

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 69/198 (34%), Gaps = 27/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+    F +S      ILVAVSGG DS+ L   L+ +         + +   +D  + 
Sbjct: 36  KAIDEFEMFTKS----DRILVAVSGGKDSLALWDILNRL-------GYQTTGFHLDLGIG 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----------GLMAAAREARYALISEH 113
             + + V        R  ++  V S       +             +A   ++  L +  
Sbjct: 85  GYSGESVEKTRAFALRHGLSLHVESLVQEVGASVANIADLTNRPPCSACGVSKRHLFNRA 144

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLR 171
           AK +   ++ T H  DD+      R   +      G     +  L D    +   +P  R
Sbjct: 145 AKKLECQVVATGHNLDDEAS----RLLGNILHWQDGYLEKQNPALPDEGGLVRKVKPLNR 200

Query: 172 CRREDIRSFLLQRNISWC 189
              +++ ++   + I++ 
Sbjct: 201 LTEKEMAAYAFLKGINYV 218


>gi|255526695|ref|ZP_05393599.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296185613|ref|ZP_06854022.1| PP-loop family protein [Clostridium carboxidivorans P7]
 gi|255509627|gb|EET85963.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296049741|gb|EFG89166.1| PP-loop family protein [Clostridium carboxidivorans P7]
          Length = 289

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAI----SV 58
             +++++ + + +     I VA+SGG DSM +      +   R    +++F A+      
Sbjct: 39  KFVKAIKNY-KLVEEGDKIAVAISGGKDSMLMAKLFQELHRHRQMNFQLEFIAMDPGYH- 96

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEH 113
                   KD  + + D C  L I   +         +   Q          R   +   
Sbjct: 97  --------KDIKKLLIDNCEYLNIPVQIFESGIFEVADKIAQKYPCYMCARMRRGALYTK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK +    +   H F+D +ET  +            L  +  T      + + RP     
Sbjct: 149 AKELGCNKLALGHHFNDVIETTLLNVL-YSGNFKTMLPKLKSTNF--EGIELIRPLYYIE 205

Query: 174 REDIRSFLLQRNI 186
            E+I+ F+ +  I
Sbjct: 206 EENIQRFIQKSGI 218


>gi|58584039|ref|YP_203055.1| C32 tRNA thiolase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625816|ref|YP_453188.1| hypothetical protein XOO_4159 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|75433627|sp|Q5GUF3|TTCA_XANOR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123520583|sp|Q2NXR3|TTCA_XANOM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|58428633|gb|AAW77670.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84369756|dbj|BAE70914.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 305

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 22/243 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               I+V +SGG DS  +L  L  +        + F+ ++V+  L +   D   +V    
Sbjct: 50  PGDKIMVCLSGGKDSYTMLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAHVLPAY 104

Query: 77  CSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L +   +V         +       + +     R   +  +A+T   T I   H  D
Sbjct: 105 LDALGVPFDIVEQDTYSVVSRVVPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHHRD 164

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D + T +M            L+ M   +  D     + RP    R   I ++   R    
Sbjct: 165 DIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREAHIAAYAQARQFPI 219

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
              P N     +    R+ V  +  H  + +  + + +   + +     +         +
Sbjct: 220 I--PCNLCGS-QENLQRQQVGKMLQHWDHEQPGRVEQIARALGDVRPEQLADRTLFDFLA 276

Query: 249 IIA 251
           +  
Sbjct: 277 LGR 279


>gi|21244941|ref|NP_644523.1| C32 tRNA thiolase [Xanthomonas axonopodis pv. citri str. 306]
 gi|81798222|sp|Q8PEW6|TTCA_XANAC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|21110658|gb|AAM39059.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 305

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 77/245 (31%), Gaps = 22/245 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     I+V +SGG DS  LL  L  +        + FS ++V+  L +   D   +V  
Sbjct: 48  IAPGDKIMVCLSGGKDSYTLLDMLLQLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102

Query: 75  DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L +  ++V                 + +     R   +  +A+T   T I   H 
Sbjct: 103 AYLRGLGVPFAIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186
            DD + T +M            L+ M   +  D     + RP    R  DI ++   R  
Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
                P N     +    R+ V  +          + + +   + +     +        
Sbjct: 218 PII--PCNLCGS-QENLQRQQVGKLLQQWDRESPGRVEQIARALGDVRPEQLADRTLFDF 274

Query: 247 RSIIA 251
            ++  
Sbjct: 275 LALGR 279


>gi|299532629|ref|ZP_07046017.1| PP-loop [Comamonas testosteroni S44]
 gi|298719264|gb|EFI60233.1| PP-loop [Comamonas testosteroni S44]
          Length = 331

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 83/257 (32%), Gaps = 22/257 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L  +   R+  K    A+++D   +        +V  +  
Sbjct: 70  GDKVMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPEYF 124

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +       V  +               R A++ + A  +  T +   H  DD
Sbjct: 125 QSIGVDYHIENQDTYSVVKRVVPEGKTTCGLCSRLRRAILYKVADQLGCTKVALGHHRDD 184

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ++T+ +        KGM        +  D    + RP      +D   +   +N     
Sbjct: 185 IVQTMMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTTRWAQYQNFPII- 239

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N     D  +RV V   +R+ D          F+ +   V   +             
Sbjct: 240 -PCNLCGSQDGLQRVAVGNMLREWDKKFPGRIESMFRAMGNIVTTHMMDPQLHDFRNAKA 298

Query: 248 SIIAISQDILNIDSTLL 264
           + IA     +  D   L
Sbjct: 299 TGIADPNGDMAFDHEEL 315


>gi|18404236|ref|NP_566753.1| RSY3 (RASPBERRY 3) [Arabidopsis thaliana]
 gi|14532774|gb|AAK64168.1| unknown protein [Arabidopsis thaliana]
 gi|332643402|gb|AEE76923.1| protein raspberry 3 [Arabidopsis thaliana]
          Length = 462

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIRS 179
           Q E   +R  R     G+  +     I           + + ++ + RP L   +ED+  
Sbjct: 8   QAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYK 67

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVA 235
                   W EDP+N    F R R+R  + +++       L   + + +  R  V+    
Sbjct: 68  ICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCT 127

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSMERVML 292
            LI + +TV  +    +  + LN        L +   A+      +       + + ++ 
Sbjct: 128 DLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLN 187

Query: 293 FLKS 296
           ++++
Sbjct: 188 YIRA 191


>gi|258544149|ref|ZP_05704383.1| PP-loop family protein [Cardiobacterium hominis ATCC 15826]
 gi|258520591|gb|EEV89450.1| PP-loop family protein [Cardiobacterium hominis ATCC 15826]
          Length = 326

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 84/247 (34%), Gaps = 22/247 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +    H++V +SGG DS  +L  L S+       + K +A+++D   +        +V
Sbjct: 52  QMIEAGDHVMVCLSGGKDSYAMLDLLLSLQRSAPV-EFKLTAVNLD-QKQPG---FPEHV 106

Query: 74  S-DVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +  + + + + ++             P   + +     R   +  +AK    T I   
Sbjct: 107 LPEYLASIGVDYHIIESDTYSIVTDKIAPGNTMCSLCSRLRRGHLYTYAKQFGMTKIALG 166

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQR 184
           H   D +ET ++         G  L  M   +  D    I  RP   C   DI  +   R
Sbjct: 167 HHKFDIMETFFLNLF-----HGGQLKAMPPKLQSDDGAHIVIRPLAYCDERDIAKYAEWR 221

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
                  P N     +    R+ ++++ L    L  K+   +   +       +      
Sbjct: 222 QFPII--PCNLCGS-QENLQRKAIKEMLLQWDKLAPKRLDSIFAALTRVRPSHLLDRELF 278

Query: 245 HMRSIIA 251
              ++ A
Sbjct: 279 DFAALGA 285


>gi|150006134|ref|YP_001300878.1| hypothetical protein BVU_3645 [Bacteroides vulgatus ATCC 8482]
 gi|254883522|ref|ZP_05256232.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294775313|ref|ZP_06740836.1| PP-loop family protein [Bacteroides vulgatus PC510]
 gi|319641690|ref|ZP_07996373.1| hypothetical protein HMPREF9011_01971 [Bacteroides sp. 3_1_40A]
 gi|149934558|gb|ABR41256.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
 gi|254836315|gb|EET16624.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294450890|gb|EFG19367.1| PP-loop family protein [Bacteroides vulgatus PC510]
 gi|317386664|gb|EFV67560.1| hypothetical protein HMPREF9011_01971 [Bacteroides sp. 3_1_40A]
          Length = 251

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 15/178 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEV 70
           R +     IL+ +SGG DS+     L  +       K KF+ I+V      +   +  E 
Sbjct: 26  RLIEDGDKILIGLSGGKDSL---ALLELLARRSRILKPKFTVIAVHVGMTNIPYQSDLE- 81

Query: 71  RYVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            Y+      L +           ++  +          R   +   AK      I   H 
Sbjct: 82  -YLKGYSEDLGVPFVHYETFFDPSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHH 140

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            DD LET+ M        +G   +     ++    + I RP       D+      R 
Sbjct: 141 MDDILETLLMNIT----FQGAFSTMPPKLVMRKFEMTIIRPMCLVHEADLIEMARIRG 194


>gi|213647076|ref|ZP_03377129.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 268

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 20/197 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197

Query: 179 SFLLQRNISWCEDPSNT 195
            F   +       P N 
Sbjct: 198 RFAEAKAFPII--PCNL 212


>gi|213580971|ref|ZP_03362797.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 224

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 20/197 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197

Query: 179 SFLLQRNISWCEDPSNT 195
            F   +       P N 
Sbjct: 198 RFAEAKAFPII--PCNL 212


>gi|313904543|ref|ZP_07837919.1| PP-loop domain protein [Eubacterium cellulosolvens 6]
 gi|313470685|gb|EFR66011.1| PP-loop domain protein [Eubacterium cellulosolvens 6]
          Length = 396

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 88/237 (37%), Gaps = 26/237 (10%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRY 72
            LV P   I V +SGG DSM L+  L   L  R+  KI F  + +  C+    ++  +  
Sbjct: 135 ELVKPGDKIAVCISGGKDSM-LMAMLFKELKRRN--KIPFEVVYL--CMNPGYSETTLGM 189

Query: 73  VSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +      L +  +     +    ++ P++     AR  R   +   A+ +    I   H 
Sbjct: 190 IEGNAKLLDLPLTMFETRIFDAVDNIPKSPCYICAR-MRRGYLYRKAQDLGCNKIALGHH 248

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +DD +ET  M       +    +  +  T      L + RP    R +DI+ +     + 
Sbjct: 249 YDDVIETTLMSIL-YSGQVQTMMPKLRSTNF--KGLELIRPLYLIREDDIKDWRDYNGLQ 305

Query: 188 WC------EDPSNTDDRF----ERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
           +        D  + D       +RV  ++ +  I      ++   F+ +     NAV
Sbjct: 306 FIRCACHFTDTCSIDGHGGTGSKRVEAKQLIAQIKKTTPAVEGNIFRSMENISLNAV 362


>gi|77460453|ref|YP_349960.1| hypothetical protein Pfl01_4232 [Pseudomonas fluorescens Pf0-1]
 gi|123603637|sp|Q3K8D5|TTCA_PSEPF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|77384456|gb|ABA75969.1| hypothetical protein Pfl01_4232 [Pseudomonas fluorescens Pf0-1]
          Length = 274

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 89/273 (32%), Gaps = 31/273 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVTDF-NMIEDGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFEIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            AT +   H  DD +ET ++    + + K M           D    + RP   C  +DI
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCNEKDI 189

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +++   +       P N     +    R+ V+++        ++ ++        ++   
Sbjct: 190 QAYSDFKQFPII--PCNLCGS-QENLQRQVVKEM--------LQDWERKTPGRTESIFRS 238

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRV 270
           +   +   +          L ID T     + V
Sbjct: 239 LQNVIPSQLADRNLFDFTSLKIDETAASRFVNV 271


>gi|227872664|ref|ZP_03990994.1| PP-loop family ATPase [Oribacterium sinus F0268]
 gi|227841478|gb|EEJ51778.1| PP-loop family ATPase [Oribacterium sinus F0268]
          Length = 393

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 11/172 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DSM +      +     F       + +D       +   + + +  + L 
Sbjct: 144 ICVCISGGKDSMIMAKLFQELKRHNKFP-FTLHFLCMDPGYNAYNR---QIIEENAALLG 199

Query: 82  IAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
           I          +      +         R   +   AK +    I   H FDD +ETV M
Sbjct: 200 IPLEFFQSDIFESVFTIDSSPCYVCARMRRGHLYSKAKELGCNKIALGHHFDDVIETVLM 259

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
                Y+ +   +     +  ++  + + RP    R +DI  +     +++ 
Sbjct: 260 GML--YSGQFQAMMPKLHSTNFE-GMELIRPLYYVREKDIIHWRNYNQLNFI 308


>gi|15897505|ref|NP_342110.1| hypothetical protein SSO0586 [Sulfolobus solfataricus P2]
 gi|284174823|ref|ZP_06388792.1| hypothetical protein Ssol98_09246 [Sulfolobus solfataricus 98/2]
 gi|6015886|emb|CAB57713.1| hypothetical protein [Sulfolobus solfataricus P2]
 gi|13813752|gb|AAK40900.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261602266|gb|ACX91869.1| PP-loop domain protein [Sulfolobus solfataricus 98/2]
          Length = 323

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 27/247 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRY 72
           + +V    IL+AVSGG DS+ L   L   +        +  A +++  ++   ++E V+ 
Sbjct: 42  QEIVNSNKILLAVSGGKDSLVLADTLSQFI-----HPSRLIAFNINEGIKGYNRNEYVKK 96

Query: 73  VSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAAREARYALISEHAKTI 117
           + +    L I      +K                 K            R  LI+E    +
Sbjct: 97  LEEYLKDLGIELIKSGFKEEVGFSLDEMLEASLKKKLNVSACTFCGGFRRKLINEAGIKV 156

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  + T H  DD+++T+ +   R    + +   G    ++    +   +P  +    + 
Sbjct: 157 AADYVATGHNLDDEVQTIVINLIRGDLLRLIRF-GDKPLMVSSKFVMRVKPLRKIYEWET 215

Query: 178 RSFLLQRNISWCEDPSNTDDR--FERVRVRRFVRDIDLHA---LYLKMKKFQDLRVKVNN 232
             +   +   + E       +    R +VR  +  ++      L   +++F ++  K+  
Sbjct: 216 TMYAHLKGFEFQETECPYISQKPTLRAKVRDLLYKLEEKKPGTLLRILEQFDEISEKIKK 275

Query: 233 AVAMLIP 239
              +   
Sbjct: 276 EYRLTNE 282


>gi|319789617|ref|YP_004151250.1| PP-loop domain protein [Thermovibrio ammonificans HB-1]
 gi|317114119|gb|ADU96609.1| PP-loop domain protein [Thermovibrio ammonificans HB-1]
          Length = 309

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 28/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+  + F +       +LVAVSGG DS+ L  ALH +  +     +            
Sbjct: 41  KTIKKFKMFSKR----EKVLVAVSGGKDSLSLWFALHRLGYETYGFHVSLGIK----GW- 91

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA----AREA--------RYALIS 111
           + ++  +     +  R+     V   K     T    A     R+         RY L++
Sbjct: 92  DYSERSLEMCRKLSERIGRPLIVFDLKEEFGYTIEEIAKGTGRRDVCSVCGTFKRY-LMN 150

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPF 169
           + A+     ++ T H  DD  E+       +     +G  G    +L +        +PF
Sbjct: 151 KVAREHGFKVVATGHNLDD--ESAL--LLSNTIRWEIGYLGRQAPVLPEEGGFARKVKPF 206

Query: 170 LRCRREDIRSFLLQRNISW 188
                ++  S+ +  NI +
Sbjct: 207 CFLTEKETVSYAIVNNIEF 225


>gi|146311794|ref|YP_001176868.1| C32 tRNA thiolase [Enterobacter sp. 638]
 gi|205830587|sp|A4WAT7|TTCA_ENT38 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|145318670|gb|ABP60817.1| tRNA s(2)C-32 sulfurtransferase [Enterobacter sp. 638]
          Length = 311

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 88/255 (34%), Gaps = 22/255 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++       K    A+++D   +        ++  +  
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-KFSLVAVNLD-QKQPG---FPEHILPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +  + + +V        K+  P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  EQQGVEYKIVEENTYGIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F   R      
Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAQAREYPII- 208

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F  ++  V + ++ +          
Sbjct: 209 -PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFSAMQNVVPSHLSDVELFDFKGIQH 267

Query: 248 SIIAISQDILNIDST 262
               ++   L  D  
Sbjct: 268 GSEVVAGGDLAFDRE 282


>gi|157962045|ref|YP_001502079.1| C32 tRNA thiolase [Shewanella pealeana ATCC 700345]
 gi|205830629|sp|A8H4Q7|TTCA_SHEPA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|157847045|gb|ABV87544.1| PP-loop domain protein [Shewanella pealeana ATCC 700345]
          Length = 311

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 77/212 (36%), Gaps = 20/212 (9%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++   R+  K +  A+++D   +    +++         L +A+ 
Sbjct: 44  LSGGKDSYAMLDILLNLQ-QRAPIKFEIVAVNLD-QKQPGFPEDILPA--YLDTLGVAYH 99

Query: 86  VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 100 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETMFLN 159

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT--- 195
                   G   +     +  D    + RP    R +DI  +   +       P N    
Sbjct: 160 MF----FAGKMKAMPPKLLSDDGANMVIRPLAYAREKDIAEYAALKGFPII--PCNLCGS 213

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +  +R  V+  +   D          F  ++
Sbjct: 214 QENLKRAAVKEMLVQWDKQHPGRIETIFTAMQ 245


>gi|110825826|gb|ABH00989.1| PP superfamily ATPase [Rhodobacter capsulatus]
          Length = 250

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 15/172 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL  LH +   R    +   A ++D   +         + +  
Sbjct: 44  RGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 99

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           SR+ + H +       +            A     R   +   A+    + ++  H  DD
Sbjct: 100 SRMGVPHRIEYQDTYSIVMDKIPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 159

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            LET +M         G   +     +  D +L++ RP       D   F  
Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEDGDLFVYRPLAFVAEADCEKFAR 207


>gi|257466208|ref|ZP_05630519.1| PP family ATPase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917366|ref|ZP_07913606.1| PP family ATPase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691241|gb|EFS28076.1| PP family ATPase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 262

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 16/190 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++V+ F   L+     I V VSGG DS+ L      +  DRS    +   IS++   
Sbjct: 22  KFVKAVQDF--ELIEDGDRIAVGVSGGKDSLLLCKLFQELKKDRS-KNFELQFISMNPGF 78

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTI 117
              A D  ++  ++   L I  ++      +               + R  ++ +  + +
Sbjct: 79  --EAMDIDKFEQNL-KDLEIDCTIFDANVWQVAFDQDPESPCFLCAKMRRGVLYKKVEEL 135

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +        K    + +         L I RP +  + +DI
Sbjct: 136 GCNKLALGHHFDDVIETTMINLFYASTVK----TMLPKVSSTSGKLQIIRPLVYVKEQDI 191

Query: 178 RSFLLQRNIS 187
           +SF+    I 
Sbjct: 192 KSFMKSNEIE 201


>gi|114770126|ref|ZP_01447664.1| hypothetical protein OM2255_10835 [alpha proteobacterium HTCC2255]
 gi|114548963|gb|EAU51846.1| hypothetical protein OM2255_10835 [alpha proteobacterium HTCC2255]
          Length = 280

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 17/176 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                LV +SGG DS  LL AL  +   R    I+  A ++D   +         + +  
Sbjct: 44  RGKKWLVCLSGGKDSYTLLAALTELQ-WRGLLPIEILACNLD---QGQPNFPATVLPEFL 99

Query: 78  SRLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++ +         +S+V  K    +T   A     R   +   A+    + ++  H  D
Sbjct: 100 KKMGVPNRIEYEDTYSIVKEKVPAGRT-YCAMCSRLRRGNLYRIAREEGCSAVVLGHHRD 158

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           D LET +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 159 DMLETFFMNLFHG----GRLATMPPKLVNDEGDLFVYRPLAHVAEADCEKFAKSLN 210


>gi|114566542|ref|YP_753696.1| PP family ATPase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337477|gb|ABI68325.1| ATPase of the pp-loop superfamily [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 240

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 19/222 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLRETAKDEVR 71
           R L     + + +SGG DS+     L+ +L    +  + FS   + +D         EV 
Sbjct: 21  RLLENGDRVAIGMSGGKDSL---TLLYFLLLLYRYTPLDFSVFPVYLDLGW--ENDIEVM 75

Query: 72  YVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                C  L    ++          +++ +    +     R   ++  AK +N   +   
Sbjct: 76  LA--FCEELGTPLTIEKTNIGQIVFDNRQEKNPCSLCANLRRGALNRVAKGLNCNKVALG 133

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD + T+++        +G        T L  +++ I RP +     DI  F+  + 
Sbjct: 134 HHLDDVVNTMFLSML----FEGRFKVFKPSTYLDRMDITIIRPLVYVEEADIIRFIEAKG 189

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           ++   +    D   +R  V   +  I+ H    + K    + 
Sbjct: 190 LALAPNRCPADGVGKRAEVEELLNLIESHFPGARKKFLASIE 231


>gi|116749048|ref|YP_845735.1| PP-loop domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698112|gb|ABK17300.1| PP-loop domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 273

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 18/179 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRYVSDV 76
              I VAVSGG DSM  L+ L      R        A+ VD        D  E  +V + 
Sbjct: 25  GDRIAVAVSGGKDSML-LLWLLRERLSRIPVSYDLVAVHVDPGFDPQGADRLEAFFVRE- 82

Query: 77  CSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                  + V+   + +       +          R   +   A  +  + I   H  DD
Sbjct: 83  ----GFRYEVIRTDHGRIAHGPDNRENPCFLCSRLRRTALFRKAHELGCSKIAMGHNQDD 138

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            +ET ++         GM    +     +D  + + RP        +     +  +   
Sbjct: 139 LIETFFINIFYGAQVAGM----VPRQSFFDGAVTVIRPLALVPAAKVLRLSQRLGLPIV 193


>gi|254512428|ref|ZP_05124495.1| hypothetical protein RKLH11_2973 [Rhodobacteraceae bacterium KLH11]
 gi|221536139|gb|EEE39127.1| hypothetical protein RKLH11_2973 [Rhodobacteraceae bacterium KLH11]
          Length = 297

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 16/217 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             LV +SGG DS  LL  L+ +   R    +   A ++D   +         + +   R+
Sbjct: 55  RWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFLKRM 110

Query: 81  RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + H +       +            A     R   +   A+    + I+  H  DD LE
Sbjct: 111 GVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAIVLGHHRDDILE 170

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192
           T +M         G   +     +  + +L++ RP       D   F           D 
Sbjct: 171 TFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEADCEKFANAMRYPIIPCDL 226

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
             + D  +R +V++ +   + ++   +   F+ L   
Sbjct: 227 CGSQDGLQRQQVKQILDQWEKNSPGRRQVMFRALSNA 263


>gi|322832780|ref|YP_004212807.1| PP-loop domain protein [Rahnella sp. Y9602]
 gi|321167981|gb|ADW73680.1| PP-loop domain protein [Rahnella sp. Y9602]
          Length = 311

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 17/184 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  +L  L ++            A+++D   ++        + +   
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD---QKQPGFPAHILPEYLD 94

Query: 79  RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L + + +V+       K+  P+     +     R  ++   A  +  T I   H  DD 
Sbjct: 95  ALGVEYKIVTEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTATELGCTKIALGHHRDDI 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIERFAIAREYPII-- 208

Query: 192 PSNT 195
           P N 
Sbjct: 209 PCNL 212


>gi|294140932|ref|YP_003556910.1| hypothetical protein SVI_2161 [Shewanella violacea DSS12]
 gi|293327401|dbj|BAJ02132.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 316

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 20/212 (9%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++   R+  K +  A+++D   +    +EV    +    L +A+ 
Sbjct: 44  LSGGKDSYAMLDILLNLQ-QRAPIKFEIVAVNLD-QKQPGFPEEVLP--NYLDSLNVAYH 99

Query: 86  VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++                   +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 100 ILEKDTYSIVRSKIPEGQKTCSLCSRLRRGTLYGFAQQIGATKIALGHHRDDIIETMFLN 159

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT--- 195
                   G   +     +  D    + RP    R +DI  +   ++      P N    
Sbjct: 160 MF----YAGKQKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAELKSFPII--PCNLCGS 213

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +  +R  V+  +   D          F  ++
Sbjct: 214 QENLKRASVKAMLEQWDTEHPGRIESIFTAMQ 245


>gi|283768767|ref|ZP_06341678.1| PP-loop family protein [Bulleidia extructa W1219]
 gi|283104553|gb|EFC05926.1| PP-loop family protein [Bulleidia extructa W1219]
          Length = 253

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 36/239 (15%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVL-SDRSFGKIKFSAISVD-------------HC 61
           +     I V VSGG DS+ LL AL     + +      FS I +              H 
Sbjct: 20  IQKGDRICVGVSGGKDSVLLLYALSLYQKAAKRIANKDFSVIGIHLEMGFENMDFTDLH- 78

Query: 62  LRETA---KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
               +   K E+ YV D  +RL      +  KN+K Q  L +   + +   I + AK  +
Sbjct: 79  ----SFLKKKEIEYV-DYPTRL-YEILKLHPKNNKIQCSLCS---KLKKGAIVQAAKEYS 129

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +  AH  DD +ET+ M             +      L    +   RP + C   +IR
Sbjct: 130 CNKVAFAHHADDAIETLLMNMIYGARIS----TFSPAMHLKVSGMDFIRPLIYCFENEIR 185

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             + Q  +   +  +  +D + +   R+  +++ LH +Y      ++  +   +  A L
Sbjct: 186 KTVEQEQLPLVK-STCPNDGYTK---RQETKEL-LHQIYHAFPTAKENFLTSLSNQAQL 239


>gi|254239559|ref|ZP_04932881.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126192937|gb|EAZ57000.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 275

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 31/245 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS  +L  L  +        I+F  ++V+          H L      
Sbjct: 32  GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPGFPEHVL------ 82

Query: 69  EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +     I     +SVV  K  + +T   +     R   +   A  I AT +  
Sbjct: 83  -PEYLKSIGVEYHIVEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADEIGATKMAL 140

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD LET  ++       +G         +  D    + RP   C  +DI ++   +
Sbjct: 141 GHHRDDILETFLLQHVLRRHPEG---HCSPKLLADDGRNVVIRPLAYCSEKDIEAYSQLK 197

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
                  P N     +    R+ V+++ L        + + +   + N V   +      
Sbjct: 198 EFPII--PCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNLF 254

Query: 245 HMRSI 249
              ++
Sbjct: 255 DFANL 259


>gi|224827083|ref|ZP_03700180.1| PP-loop domain protein [Lutiella nitroferrum 2002]
 gi|224600749|gb|EEG06935.1| PP-loop domain protein [Lutiella nitroferrum 2002]
          Length = 320

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 22/230 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS  LL  L  +        I FS ++V+  L +       +V  + 
Sbjct: 41  QGDRVMVCLSGGKDSFALLDILLGLQKS---APIDFSIVAVN--LDQKQPGFPEHVLPEY 95

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + + + + +V                   +     R  ++   A  + AT I   H  D
Sbjct: 96  LTAIGVEYRIVEEDTYSIVKRVIPEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRD 155

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D L T+++        K    S     +  D    + RP   CR +D+  +   R     
Sbjct: 156 DMLHTLFLNMFYGGKLK----SMPPKLVSDDGKHMVIRPLAYCREKDLERYARLREFPII 211

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
             P N        +R  V+  V D D          F+ L+  V + +A 
Sbjct: 212 --PCNLCGSQPNLQRQVVKEMVNDWDKRFPGRLESMFRALQNVVPSHLAD 259


>gi|308049624|ref|YP_003913190.1| tRNA s(2)C-32 sulfurtransferase [Ferrimonas balearica DSM 9799]
 gi|307631814|gb|ADN76116.1| tRNA s(2)C-32 sulfurtransferase [Ferrimonas balearica DSM 9799]
          Length = 312

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 17/181 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79
           ++V +SGG DS  LL  L ++   R+    +  A+++D   +    +++   Y+  +   
Sbjct: 39  VMVCLSGGKDSYTLLDILLNLQ-HRAPVNFQLVAVNLD-QKQPGFPEDILPNYLKTLGVT 96

Query: 80  LRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I     +S+V  K  + +T   +     R   +   A+ I AT I   H  DD +ET+
Sbjct: 97  YHILEKDTYSIVKEKIPEGKT-TCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETL 155

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           ++         G  L  M   +L D     + RP   CR +DI  +   +       P N
Sbjct: 156 FLNMF-----YGGKLKAMPPKLLSDDGANMVIRPMAYCREKDISEYADLKAFPII--PCN 208

Query: 195 T 195
            
Sbjct: 209 L 209


>gi|304396028|ref|ZP_07377910.1| PP-loop domain protein [Pantoea sp. aB]
 gi|304356397|gb|EFM20762.1| PP-loop domain protein [Pantoea sp. aB]
          Length = 311

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 94/267 (35%), Gaps = 19/267 (7%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L S+            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRSLQKSAPV-NFSLIAVNLD-QKQPGF 84

Query: 67  KDEV--RYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
            + +  +Y+       RI     +S+V  K  + +T   +     R  ++   A  +  T
Sbjct: 85  PEHILPQYLEAQGVEYRIIEEDTYSIVKEKVPEGKT-TCSLCSRLRRGILYRVATELGCT 143

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI  F
Sbjct: 144 KIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYCREKDIIRF 199

Query: 181 LLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
              R       P N        +R  V   +RD D          F  ++  V + +A +
Sbjct: 200 SDARQFPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNVVPSHLADI 257

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLL 264
                         +    L  D   L
Sbjct: 258 NLFDFKGIKHGDAVVDGGDLAFDRETL 284


>gi|156370799|ref|XP_001628455.1| predicted protein [Nematostella vectensis]
 gi|156215432|gb|EDO36392.1| predicted protein [Nematostella vectensis]
          Length = 321

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 18/202 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +  SGG DS  L   L ++ ++R    +K   +SVD  +     D +     +    +
Sbjct: 52  VAIGASGGKDSTVLAYVLKTL-NERYNYGLKLLLLSVDEGITGYRDDSLE----LAKNYQ 106

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + + ++ ++                          R   +   A  +    I+T H  DD
Sbjct: 107 LVNELLYFQELYGWSMDAIVKQIGLKNNCTFCGVFRRQALDRGAMLLKVNKIVTGHNADD 166

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ETV M   R    +         T   +  +   +PF     ++I  +   + + +  
Sbjct: 167 IAETVIMNVLRGDIARLR--RCTAITTGTEGAIPRCKPFKYTYEKEIVMYAYFKKLDYFS 224

Query: 191 DPSNTDDRFERVRVRRFVRDID 212
                     R   R +++D++
Sbjct: 225 TECIYSPNAYRGHARTYLKDLE 246


>gi|261491597|ref|ZP_05988180.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261494957|ref|ZP_05991426.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309366|gb|EEY10600.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261312723|gb|EEY13843.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 312

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 17/184 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEV--RYVSD 75
              ++V +SGG DS  LL  L ++        + FS ++V+    +    +EV  RY+  
Sbjct: 40  GDRVMVCLSGGKDSYTLLDILLNLQQS---APVNFSVVAVNLDQKQPGFPEEVLPRYLES 96

Query: 76  VCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +    +I       +V  K  + +T   +     R  ++   A  + AT I   H  DD 
Sbjct: 97  IGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIALGHHRDDM 155

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L T+++        K    S     I  D    + RP   C+ +DI  +   +       
Sbjct: 156 LATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPII-- 209

Query: 192 PSNT 195
           P N 
Sbjct: 210 PCNL 213


>gi|254361814|ref|ZP_04977949.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica PHL213]
 gi|153093349|gb|EDN74345.1| PP-loop superfamily ATPase MesJ [Mannheimia haemolytica PHL213]
          Length = 312

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 70/184 (38%), Gaps = 17/184 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEV--RYVSD 75
              ++V +SGG DS  LL  L ++        + FS ++V+    +    +EV  RY+  
Sbjct: 40  GDRVMVCLSGGKDSYTLLDILLNLQQS---APVNFSVVAVNLDQKQPGFPEEVLPRYLES 96

Query: 76  VCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +    +I       +V  K  + +T   +     R  ++   A  + AT I   H  DD 
Sbjct: 97  IGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIALGHHRDDM 155

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L T+++        K    S     I  D    + RP   C+ +DI  +   +       
Sbjct: 156 LATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPII-- 209

Query: 192 PSNT 195
           P N 
Sbjct: 210 PCNL 213


>gi|194272234|gb|ACF37202.1| At3g24560 [Arabidopsis thaliana]
          Length = 456

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTI-----------LYDLNLWISRPFLRCRREDIRS 179
           Q E   +R  R     G+  +     I           + + ++ + RP L   +ED+  
Sbjct: 2   QAELFILRLSRSSGVLGLAGTAFASEIFSRNLQLDAKHMKNQSIRLVRPLLDLWKEDMYK 61

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----LHALYLKMKKFQDLRVKVNNAVA 235
                   W EDP+N    F R R+R  + +++       L   + + +  R  V+    
Sbjct: 62  ICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFKSELQAVISECRRTRSFVDKVCT 121

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAI---CGGQISLPGYRSMERVML 292
            LI + +TV  +    +  + LN        L +   A+      +       + + ++ 
Sbjct: 122 DLIHQTVTVTDKGYAILDLERLNPSGVKDICLSKYLFAVLQFISQRQRPIRGNTSKLLLN 181

Query: 293 FLKS 296
           ++++
Sbjct: 182 YIRA 185


>gi|330829641|ref|YP_004392593.1| PP-loop superfamily ATPase MesJ [Aeromonas veronii B565]
 gi|328804777|gb|AEB49976.1| PP-loop superfamily ATPase MesJ [Aeromonas veronii B565]
          Length = 302

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 22/205 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS G+L  L S+ +          A+++D   +        +V  +  
Sbjct: 37  GDKVMVCLSGGKDSFGMLDILMSLKASAPI-HFDLVAVNLD-QKQPG---FPVHVLPEYL 91

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L I + +V                   +     R  ++   A+ +  T I   H  DD
Sbjct: 92  DSLGIEYKIVEEDTYSIVKEKVPEGKTTCSLCSRLRRGILYRTAQELGCTKIALGHHRDD 151

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++        K    S     +  D    + RP   C+ +D+  +   +      
Sbjct: 152 ILETLFLNMFYGGKLK----SMPPKLVSDDGKNVVIRPLAYCKEKDLIRYADVKAFPII- 206

Query: 191 DPSNT---DDRFERVRVRRFVRDID 212
            P N     +  +R  +++ ++D D
Sbjct: 207 -PCNLCGSQENLQRQAIKQMMQDWD 230


>gi|307243871|ref|ZP_07525996.1| PP-loop family protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492693|gb|EFM64721.1| PP-loop family protein [Peptostreptococcus stomatis DSM 17678]
          Length = 296

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 27/198 (13%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---- 58
             I++++ +  +LV     I VA+SGG DS+ +      +   +    + F  + +    
Sbjct: 41  KFIKAIKAY--NLVEEGDKIAVAISGGKDSILMAKMFQEL---KRHSPVNFEVVYIGMDP 95

Query: 59  --DHCLRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALIS 111
                +R+   D  RY       L I   V     ++ +               R   + 
Sbjct: 96  GYHETIRDILLDNARY-------LEIPIQVFDSQIFEVADRIASDYPCYMCARMRRGALY 148

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A+ +    +   H FDD +ET  M            L  +  T      L + RP   
Sbjct: 149 GKAEALGCNKLALGHHFDDVIETTMMNIL-CSGNFKTMLPRLKSTNF--DGLELIRPLYY 205

Query: 172 CRREDIRSFLLQRNISWC 189
            R EDI  ++    ++  
Sbjct: 206 IREEDIIRWIKYTGLAPI 223


>gi|163739494|ref|ZP_02146904.1| PP-loop [Phaeobacter gallaeciensis BS107]
 gi|161387247|gb|EDQ11606.1| PP-loop [Phaeobacter gallaeciensis BS107]
          Length = 295

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R        LV +SGG DS  LL  L+ +   R    +   A ++D   +         +
Sbjct: 46  REDGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVL 101

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   ++ + H +       +            A     R   +   A+    + ++  H
Sbjct: 102 PEFLEKMGVPHRIEYQDTYSIVMDKVPQGRTFCALCSRLRRGNLYRIAREEGCSAVVLGH 161

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD LET +M         G   +     +  + +L++ RP       D   F    N 
Sbjct: 162 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEVDCEKFAKALNY 217

Query: 187 SWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                D   + D  +R +V++ +   + ++   +   F+ L
Sbjct: 218 PIIPCDLCGSQDGLQRQQVKQILDQWESNSPGRRQVMFRAL 258


>gi|212692022|ref|ZP_03300150.1| hypothetical protein BACDOR_01517 [Bacteroides dorei DSM 17855]
 gi|237708965|ref|ZP_04539446.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724693|ref|ZP_04555174.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212665414|gb|EEB25986.1| hypothetical protein BACDOR_01517 [Bacteroides dorei DSM 17855]
 gi|229436888|gb|EEO46965.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457027|gb|EEO62748.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 251

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 15/178 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEV 70
           R +     IL+A+SGG DS+     L  +       K KF+ I+V      +   +  E 
Sbjct: 26  RLIEDGDKILIALSGGKDSL---ALLELLARRSRILKPKFAVIAVHVGMTNIPYQSDLE- 81

Query: 71  RYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            Y+      L +           ++  +          R   +   AK      I   H 
Sbjct: 82  -YLKGYSEDLGVPFVHYETFFDLSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHH 140

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            DD LET+ M        +G   +     ++    + I RP       D+        
Sbjct: 141 MDDILETLLMNIT----FQGAFSTMPPKLVMRKFEMTIIRPMCLVHEADLIEMARILG 194


>gi|85059473|ref|YP_455175.1| hypothetical protein SG1495 [Sodalis glossinidius str. 'morsitans']
 gi|123519274|sp|Q2NSV5|TTCA_SODGM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|84779993|dbj|BAE74770.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 353

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 85/255 (33%), Gaps = 22/255 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L ++            A+++D   +        +V  +  
Sbjct: 41  GDRIMVCLSGGKDSYTLLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPAHVLPEYL 95

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   + + +V+                  +     R  ++   A  + AT I   H  DD
Sbjct: 96  AAQGVEYHIVTEDTYHIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATRIALGHHQDD 155

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F   R      
Sbjct: 156 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHIVIRPLAYCREKDIARFAQARQFPII- 210

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
            P N        +R  +   +RD D          F+ ++  V + ++          M+
Sbjct: 211 -PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRSETLFRAMQNVVPSHLSDTHLFDFKGLMQ 269

Query: 248 SIIAISQDILNIDST 262
               +    +  D  
Sbjct: 270 GSAVVDGGDIAFDRE 284


>gi|15669670|ref|NP_248483.1| hypothetical protein MJ_1478 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2501588|sp|Q58873|Y1478_METJA RecName: Full=CTU1/ATPBD3 family protein MJ1478
 gi|1592117|gb|AAB99482.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 303

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 17/182 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     ILVAVSGG D       L  +               ++  +   +++ ++ V
Sbjct: 46  KMLSKDEKILVAVSGGKDGHAAAWVLKKL-------GYNIELFHINLGIEGFSEESLKAV 98

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-------ARYALISEHAKTINATLIMTAH 126
            ++  +L +   VV+ K+   +T      ++        RY L+++        +I+T H
Sbjct: 99  KELAEKLEVPLHVVNLKDITGKTMEDIRGKKCSICGTTKRY-LMNKFGYENGFDVIVTGH 157

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD++ +  + +  ++  + +          +D  L   + F     E I  +     I
Sbjct: 158 NLDDEV-SFILNNLFNWNIRYLA-KHEPVLPAHDKFLKKVKIFFEIEEELILKYAEAEEI 215

Query: 187 SW 188
            +
Sbjct: 216 PY 217


>gi|265756274|ref|ZP_06090603.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233865|gb|EEZ19474.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 247

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 56/178 (31%), Gaps = 15/178 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEV 70
           R +     IL+A+SGG DS+     L  +       K KF+ I+V      +   +  E 
Sbjct: 26  RLIEDGDKILIALSGGKDSL---ALLELLARRSRILKPKFAVIAVHVGMTNIPYQSDLE- 81

Query: 71  RYVSDVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            Y+      L +           ++  +          R   +   AK      I   H 
Sbjct: 82  -YLKGYSEDLGVPFVHYETFFDLSTDTRKSPCFLCSWNRRKALFTVAKEQGCNKIALGHH 140

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            DD LET+ M        +G   +     ++    + I RP       D+        
Sbjct: 141 MDDILETLLMNIT----FQGAFSTMPPKLVMRKFEMTIIRPMCLVHEADLIEMARILG 194


>gi|99080150|ref|YP_612304.1| PP-loop [Ruegeria sp. TM1040]
 gi|123379114|sp|Q1GJX4|TTCA_SILST RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|99036430|gb|ABF63042.1| PP-loop [Ruegeria sp. TM1040]
          Length = 295

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 15/172 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             LV +SGG DS  LL  L+ +   R    +   A ++D   +         + +   ++
Sbjct: 53  KWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFLEKM 108

Query: 81  RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           ++ H +       +            A     R   +   A+    + ++  H  DD LE
Sbjct: 109 QVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDDILE 168

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           T +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 169 TFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARAMN 216


>gi|259416595|ref|ZP_05740515.1| PP-loop domain containing protein [Silicibacter sp. TrichCH4B]
 gi|259348034|gb|EEW59811.1| PP-loop domain containing protein [Silicibacter sp. TrichCH4B]
          Length = 311

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 15/172 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             LV +SGG DS  LL  L+ +   R    +   A ++D   +         + +   ++
Sbjct: 69  KWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFLEKM 124

Query: 81  RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + H +       +            A     R   +   A+    + ++  H  DD LE
Sbjct: 125 GVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDDILE 184

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           T +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 185 TFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARSMN 232


>gi|319791723|ref|YP_004153363.1| pp-loop domain protein [Variovorax paradoxus EPS]
 gi|315594186|gb|ADU35252.1| PP-loop domain protein [Variovorax paradoxus EPS]
          Length = 316

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 15/178 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V VSGG DS  +L  L  + + R+       A+++D   +    +EV       S
Sbjct: 56  GDKVMVCVSGGKDSYAMLDILLKLKA-RAPIHFDIVAVNLD-QKQPGFPEEVLP--KYLS 111

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L +A  +       +  +               R  ++   A  + AT +   H  DD 
Sbjct: 112 ELGVAFHIENQDTYSIVKRVIPEGKTTCGLCSRLRRGILYRVADELGATKVALGHHRDDM 171

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           L+T ++         G   S     +  D    + RP      +D+  +   R     
Sbjct: 172 LQTFFLNMF----FAGKLKSMPPKLVSDDGKHIVIRPLAYVAEKDLVRWAQHREFPII 225


>gi|254480597|ref|ZP_05093844.1| PP-loop family protein [marine gamma proteobacterium HTCC2148]
 gi|214039180|gb|EEB79840.1| PP-loop family protein [marine gamma proteobacterium HTCC2148]
          Length = 281

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 20/228 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS G+L  L ++         +  A+++D   +    ++V    D  +
Sbjct: 36  GDKVMVCLSGGKDSYGMLDILMNLQRSAPVS-FELVAVNLD-QKQPGFPEQVLP--DFLA 91

Query: 79  RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           ++ + + ++                         R   +   A+ I AT I   H  DD 
Sbjct: 92  QMDVPYYILEKDTYSIVKEVVPEGKTTCGLCSRLRRGSLYGFAQDIGATKIALGHHRDDI 151

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+++      + K M    + D    D    + RP   C+ +D+ ++   +       
Sbjct: 152 VETLFLNMFFGGSLKAMPPKLLSD----DKKNVVIRPMAYCKEKDLAAYAQYKEFPII-- 205

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
           P N     D  +RV+V++ +   +          F  +R    + +A 
Sbjct: 206 PCNLCGSQDNLQRVQVKKMLLQWEREYPGRTETIFSSIRNVAPSQLAD 253


>gi|254453775|ref|ZP_05067212.1| hypothetical protein OA238_4396 [Octadecabacter antarcticus 238]
 gi|198268181|gb|EDY92451.1| hypothetical protein OA238_4396 [Octadecabacter antarcticus 238]
          Length = 321

 Score = 85.3 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 76/234 (32%), Gaps = 19/234 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
              IE           P   LV +SGG DS  LL  LH +   R    +   A ++D   
Sbjct: 63  REAIEKYGMLDDRADRP-KWLVCLSGGKDSYTLLAVLHELQ-WRGLLPVDLLACNLD--- 117

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAK 115
           +         +      + + H +       +          + A     R   +   A+
Sbjct: 118 QGQPNFPATILPKFLKDMGVPHRIEYQDTYSIVVDKIPMGRTMCALCSRLRRGNLYRIAR 177

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRR 174
               + ++  H  DD LET +M            L+ M   +L +   L++ RP      
Sbjct: 178 EEGCSAVVLGHHRDDILETFFMNMFHGSR-----LAAMPPKLLNEQGDLFVFRPLAHVAE 232

Query: 175 EDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           E+   F           D   + D  +R +++  +   + ++   + K F  L 
Sbjct: 233 ENCEKFSSSMGYPIIPCDLCGSQDGLQRQQIKAMLDQWETNSPGRRQKMFTALS 286


>gi|325929500|ref|ZP_08190622.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Xanthomonas perforans 91-118]
 gi|325540130|gb|EGD11750.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Xanthomonas perforans 91-118]
          Length = 298

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 21/189 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     ++V +SGG DS  LL  L  +        + FS ++V+  L +   D   +V  
Sbjct: 48  IAPGDKVMVCLSGGKDSYTLLDMLLQLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102

Query: 75  DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L +   +V                 + +     R   +  +A+T   T I   H 
Sbjct: 103 AYLRGLGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186
            DD + T +M            L+ M   +  D     + RP    R  DI ++   R  
Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217

Query: 187 SWCEDPSNT 195
                P N 
Sbjct: 218 PII--PCNL 224


>gi|146278903|ref|YP_001169062.1| C32 tRNA thiolase [Rhodobacter sphaeroides ATCC 17025]
 gi|205830640|sp|A4WWJ3|TTCA_RHOS5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|145557144|gb|ABP71757.1| PP-loop domain protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 292

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 15/175 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL AL  +   R    ++  A ++D   +         + +  
Sbjct: 45  RDARWLVCLSGGKDSFTLLAALIEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 100

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +R+ I H +       +            +     R   +   A+    + I+  H  DD
Sbjct: 101 ARMGIPHRIEYQDTYSIVVDKIPQGRTYCSLCSRLRRGNLYRIAREEGCSAIVLGHHRDD 160

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            LET +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 161 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAFVAEADCERFARSMN 211


>gi|163740287|ref|ZP_02147681.1| hypothetical protein RG210_09307 [Phaeobacter gallaeciensis 2.10]
 gi|161386145|gb|EDQ10520.1| hypothetical protein RG210_09307 [Phaeobacter gallaeciensis 2.10]
          Length = 295

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R        LV +SGG DS  LL  L+ +   R    +   A ++D   +         +
Sbjct: 46  REDGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVL 101

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   ++ + H +       +            A     R   +   A+    + ++  H
Sbjct: 102 PEFLEKMGVPHRIEYQDTYSIVMDKVPQGRTFCALCSRLRRGNLYRIAREEGCSAVVLGH 161

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD LET +M         G   +     +  + +L++ RP       D   F    N 
Sbjct: 162 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEVDCEKFAKALNY 217

Query: 187 SWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                D   + D  +R +V++ +   + ++   +   F+ L
Sbjct: 218 PIIPCDLCGSQDGLQRQQVKQILDQWESNSPGRRQVMFRAL 258


>gi|317132000|ref|YP_004091314.1| PP-loop domain protein [Ethanoligenens harbinense YUAN-3]
 gi|315469979|gb|ADU26583.1| PP-loop domain protein [Ethanoligenens harbinense YUAN-3]
          Length = 274

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 16/193 (8%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDH 60
           L  I+S++ +   +     I V +SGG DSM +      ++      ++ F+A  + +D 
Sbjct: 21  LRFIQSIKDY-ELIKAGDRIAVCISGGKDSMCMAKCFQQLVP---HSEVPFTAEYLVMDP 76

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKT 116
                 +   R + D    L +   +   K     +  +          R   + + A+ 
Sbjct: 77  GYNAANR---RRILDNAEALHVPIHLFETKIFDIVADVEHSPCYLCARMRRGYLYKKAQE 133

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    I  AH FDD +ETV +        K M       +  Y   + + RP    R  D
Sbjct: 134 LGCNKIALAHHFDDAIETVLLSMLYSGEIKTM--MPKLHSAHYP-GMELIRPMYLVREAD 190

Query: 177 IRSFLLQRNISWC 189
           I ++     + + 
Sbjct: 191 IIAWRQYNGLQFI 203


>gi|149376348|ref|ZP_01894111.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Marinobacter algicola DG893]
 gi|149359362|gb|EDM47823.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Marinobacter algicola DG893]
          Length = 303

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 15/176 (8%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSRLRI- 82
           +SGG DS  +L  L ++       + +  A+++D   +    +EV   Y+S +     I 
Sbjct: 56  LSGGKDSYAMLDILLNLQKSAPV-RFELIAVNLD-QKQPGFPEEVLPEYLSALGIEYHII 113

Query: 83  ---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
               +S+V  K  + +T         R  ++   A+    T I   H  DD LET+++  
Sbjct: 114 EKDTYSIVKEKVPEGKT-TCGLCSRLRRGILYNFAEEHGVTKIALGHHRDDLLETLFLNM 172

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                 K M      D    D    + RP    R +DI  +   R       P N 
Sbjct: 173 FYGGKLKSMPPVLHSD----DGRNTVIRPLAYSREKDIARYARLREFPII--PCNL 222


>gi|300814739|ref|ZP_07094987.1| PP-loop family protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511126|gb|EFK38378.1| PP-loop family protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 276

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 71/199 (35%), Gaps = 22/199 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I++ + +   +     I VA+SGG DS+ L   +  +   R         I++D  
Sbjct: 26  FRKFIKACKEY-ELIQDGDKIAVAISGGKDSLTLAKLMQELKKHRQV-DFSLEFIAMDPG 83

Query: 62  -LRETAKDEVRYVSDV---CSRLRIA---HSVVSWKNSKP---QTGLMAAAREARYALIS 111
            ++E +        ++   C +L I    +    ++ ++               R   + 
Sbjct: 84  YIKENSD-------NLLYNCKKLGIPVKLYKSDIFEVAEKLTNGDSPCYMCARMRRGNLY 136

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             AK +    +   H F+D +ET+ +       +    +  +      D+   + RP   
Sbjct: 137 SKAKELGCNKLALGHHFNDVIETILLNII-FAGDYKTMMPKLKAKNFSDM--ELIRPMYL 193

Query: 172 CRREDIRSFLLQRNISWCE 190
            + E I  F+    ++  +
Sbjct: 194 VKEEAIIRFMKSTGLNPLD 212


>gi|289423511|ref|ZP_06425312.1| PP-loop family protein [Peptostreptococcus anaerobius 653-L]
 gi|289156013|gb|EFD04677.1| PP-loop family protein [Peptostreptococcus anaerobius 653-L]
          Length = 299

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 56/178 (31%), Gaps = 22/178 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HCLRETAKDEVRYV 73
              I VA+SGG DSM +      +   +    + F  + +      H     +    + +
Sbjct: 62  GDKIAVAISGGKDSMLMAKMFQEL---KRHSPVNFEVVYLAMDPGYH----DSIR--KLL 112

Query: 74  SDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTF 128
            D C  L I         ++ +               R   +   A+ +    +   H F
Sbjct: 113 EDNCEYLDIPLVTFDSQIFEVADRIASDYPCYMCARMRRGALYGKAEELGCNKLALGHHF 172

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           DD +ET  +            L  +  T      + + RP    R EDI  ++    I
Sbjct: 173 DDVIETTMLNVL-CAGNFKTMLPKLKSTNF--EGIELIRPLYYIREEDIIRWMTYTGI 227


>gi|289668514|ref|ZP_06489589.1| PP-loop family ATPase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 305

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 78/248 (31%), Gaps = 22/248 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
              +     I+V +SGG DS  LL  L  +        + F+ ++V+  L +   D   +
Sbjct: 45  FSMIAPGDKIMVCLSGGKDSYTLLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAH 99

Query: 73  VS-DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMT 124
           V       L +   +V                 + +     R   +  +A+T   T I  
Sbjct: 100 VLPAYLRGLGVPFDIVEQDTYSVVSRLIPAGKTMCSLCSRLRRGALYAYAQTHGVTKITL 159

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183
            H  DD + T +M            L+ M   +  D     + RP    R  DI ++   
Sbjct: 160 GHHRDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQA 214

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           R       P N     +    R+ V  +       +  + + +   + +     +   + 
Sbjct: 215 RQFPII--PCNLCGS-QENLQRQQVGKMLQQWDREQPGRVEQIARALGDVRPEQLADRML 271

Query: 244 VHMRSIIA 251
               ++  
Sbjct: 272 FDFLALGR 279


>gi|307264980|ref|ZP_07546541.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919965|gb|EFN50178.1| PP-loop domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 300

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 22/201 (10%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  ++  + F +       +LV VSGG DSM L   L               A+ ++  +
Sbjct: 35  LKNVQKNKMFKKD----DRVLVVVSGGKDSMALWDVLAK-------EGYNVVAMYINLGI 83

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112
            E +      V +   +  +   V + K              +    +     +  L ++
Sbjct: 84  GEYSNRSQEVVENFAKKNNLPLIVKNIKEEFGLDIYKLSKTLKRSPCSVCGTIKRYLFNK 143

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A     ++I T H  DD++ T+      ++ E  +   G      +   +   +PF   
Sbjct: 144 VAYDNGFSVIATGHNLDDEVATLLGNIL-NWGESYLARQGPVLPQTHPKLIKKVKPFYTL 202

Query: 173 RREDIRSFLLQRNISWCEDPS 193
             ++   ++L   I +  +  
Sbjct: 203 TEKENMYYVLLNKIEFLHEEC 223


>gi|205830647|sp|Q3BMF4|TTCA_XANC5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 305

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 21/189 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     ++V +SGG DS  LL  L  +        + FS ++V+  L +   D   +V  
Sbjct: 48  IAPGDKVMVCLSGGKDSYTLLDMLLQLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 102

Query: 75  DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L +   +V                 + +     R   +  +A+T   T I   H 
Sbjct: 103 AYLRGLGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 162

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186
            DD + T +M            L+ M   +  D     + RP    R  DI ++   R  
Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 217

Query: 187 SWCEDPSNT 195
                P N 
Sbjct: 218 PII--PCNL 224


>gi|284048673|ref|YP_003399012.1| PP-loop domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952894|gb|ADB47697.1| PP-loop domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 391

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 11/178 (6%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DSM +      +             + +D       +   + + +
Sbjct: 149 IQPGDKIAVCISGGKDSMLMAKLFQDLKRHNKIP-FDLVFLCMDPGYNAMNR---KIIEE 204

Query: 76  VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               L++  +  S +        +        + R   +   A+ +    I   H FDD 
Sbjct: 205 NAKLLQVPLTFFSTEIFEAVFHVEDSPCYLCAKMRRGYLYRKARELGCNKIALGHHFDDV 264

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           +ET  M      A + M L  +  T      + + RP    R EDI+S+  +  + + 
Sbjct: 265 IETNLMSMLYSGAIRTM-LPRLKSTSCP--GMELIRPLYYVREEDIKSWRDENGLYFI 319


>gi|29654375|ref|NP_820067.1| PP-loop family protein [Coxiella burnetii RSA 493]
 gi|81628995|sp|Q83CP2|TTCA_COXBU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|29541642|gb|AAO90581.1| tRNA s2C32 biosynthesis protein [Coxiella burnetii RSA 493]
          Length = 256

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 18/243 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ++V +SGG DS  LL  L+S+  +    K    A  +D   +     +   +
Sbjct: 22  RMINTGDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSAL 77

Query: 74  SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                  +I + +++                  +     R  +I  +A+    + I   H
Sbjct: 78  RGWLDDKKIPYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGH 137

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++T+ M    +   +    S     +  +    + RP   C+  DI  + +++  
Sbjct: 138 HRDDLIQTLLMSVFYNGQIR----SMPPKLLSDNKRHVLIRPLAYCQERDIIKYAMEQQF 193

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
                P N  D  ++  +R+ V+ +         K   ++   ++N     +  +   + 
Sbjct: 194 PLI--PCNLCDS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNF 250

Query: 247 RSI 249
           R +
Sbjct: 251 REL 253


>gi|270157460|ref|ZP_06186117.1| PP-loop family protein [Legionella longbeachae D-4968]
 gi|289164149|ref|YP_003454287.1| C32 tRNA thiolase [Legionella longbeachae NSW150]
 gi|269989485|gb|EEZ95739.1| PP-loop family protein [Legionella longbeachae D-4968]
 gi|288857322|emb|CBJ11149.1| putative C32 tRNA thiolase [Legionella longbeachae NSW150]
          Length = 280

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 21/228 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L+ +   RS  K +  + ++D   +    D    +  
Sbjct: 25  IQRGDRVMVCLSGGKDSFTLLTILNQLRR-RSGNKFELFSFTLD-QAQPGWNDSA--LRQ 80

Query: 76  VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                 I H +++                  +     R  +I  +A+      I   H  
Sbjct: 81  WLKERSIPHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGFNKIALGHHR 140

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187
           DD + T+ M    +   +      M   +L D    I  RP    +  DI ++  ++   
Sbjct: 141 DDLVRTLMMSIFYNGDIRS-----MPPKLLSDNKKHIVIRPLCYVQENDIITYAQEQAYP 195

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
               P N     +   +R+ V  + +  L  +  K     +    ++ 
Sbjct: 196 II--PCNLCGS-QENLMRKKVARL-IDQLAEENPKVPSNILHALQSIK 239


>gi|257451991|ref|ZP_05617290.1| PP family ATPase [Fusobacterium sp. 3_1_5R]
 gi|317058540|ref|ZP_07923025.1| PP family ATPase [Fusobacterium sp. 3_1_5R]
 gi|313684216|gb|EFS21051.1| PP family ATPase [Fusobacterium sp. 3_1_5R]
          Length = 262

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 70/190 (36%), Gaps = 16/190 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++V+ F   L+     I V VSGG DS+ L      +  DRS        IS++   
Sbjct: 22  KFVKAVQDF--ELIEDGDRIAVGVSGGKDSLLLCKLFQELKKDRS-KNFDLQFISMNPGF 78

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTI 117
              A D  ++  ++   L I  ++      +               + R  ++ +  + +
Sbjct: 79  --EAMDIDKFEQNL-KDLEIDCTIFDANVWQVAFDQDPESPCFLCAKMRRGVLYKKVEEL 135

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +        K    + +         L I RP +  + +DI
Sbjct: 136 GCNKLALGHHFDDVIETTMINLFYASTVK----TMLPKVSSTSGKLQIIRPLVYVKEQDI 191

Query: 178 RSFLLQRNIS 187
           +SF+    I 
Sbjct: 192 KSFMKSNEIE 201


>gi|282881884|ref|ZP_06290535.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Peptoniphilus
           lacrimalis 315-B]
 gi|281298293|gb|EFA90738.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Peptoniphilus
           lacrimalis 315-B]
          Length = 277

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I++ + +   +     I VA+SGG DS+ L   +  +   R         I++D  
Sbjct: 27  FRKFIKACKEY-ELIQDGDKIAVAISGGKDSLTLAKLMQELKRHRQV-DFSLEFIAMDPG 84

Query: 62  -LRETAKDEVRYVSDV---CSRLRIA---HSVVSWKNSKP---QTGLMAAAREARYALIS 111
            ++E +        ++   C +L I    +    ++ ++               R   + 
Sbjct: 85  YIKENSD-------NLLYNCKKLGIPVKLYKSDIFEVAEKLTNGDSPCYMCARMRRGNLY 137

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             AK +    +   H F+D +ET+ +     +A     +        +  ++ + RP   
Sbjct: 138 SKAKELGCNKLALGHHFNDVIETILLNII--FAGDYKTMMPKLKAQNF-SDMELIRPMYL 194

Query: 172 CRREDIRSFLLQRNISWCE 190
            + E I  F+    ++  +
Sbjct: 195 VKEEAIIRFMKSTGLNPLD 213


>gi|157145670|ref|YP_001452989.1| C32 tRNA thiolase [Citrobacter koseri ATCC BAA-895]
 gi|205830573|sp|A8AGE0|TTCA_CITK8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|157082875|gb|ABV12553.1| hypothetical protein CKO_01418 [Citrobacter koseri ATCC BAA-895]
          Length = 311

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++  +    L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPEYLENLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + ++
Sbjct: 198 RFSEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLS 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            +              +    L  D   +
Sbjct: 256 DINLFDFKGINHDSDVVDGGDLAFDREEI 284


>gi|326390081|ref|ZP_08211643.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993946|gb|EGD52376.1| PP-loop domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 300

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 22/201 (10%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  I+  + F +       +LV VSGG DSM L   L               A+ ++  +
Sbjct: 35  LKNIQKNKMFKKD----DRVLVVVSGGKDSMALWDVLAK-------EGYNVVAMYINLGI 83

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112
            E +      V +   +  +   V + K              +    +     +  L ++
Sbjct: 84  GEYSNRSQEVVENFAKKNNLPLIVKNIKEEFGLDIYKLSKTLKRSPCSVCGTIKRYLFNK 143

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A     ++I T H  DD++ T+      ++ E  +   G      +   +   +P    
Sbjct: 144 VAYDNGFSVIATGHNLDDEVATLLGNIL-NWGESYLARQGPVLPQTHPKLIKKVKPLYTL 202

Query: 173 RREDIRSFLLQRNISWCEDPS 193
             ++   ++L   I +  +  
Sbjct: 203 TEKENMYYVLLNKIEFLHEEC 223


>gi|167039805|ref|YP_001662790.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514]
 gi|300915540|ref|ZP_07132850.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307724869|ref|YP_003904620.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166854045|gb|ABY92454.1| PP-loop domain protein [Thermoanaerobacter sp. X514]
 gi|300888404|gb|EFK83556.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307581930|gb|ADN55329.1| PP-loop domain protein [Thermoanaerobacter sp. X513]
          Length = 300

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 22/201 (10%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  I+  + F +       +LV VSGG DSM L   L               A+ ++  +
Sbjct: 35  LKNIQKNKMFKKD----DRVLVVVSGGKDSMALWDVLVK-------EGYNVVAMYINLGI 83

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112
            E +      V +   +  +   V + K              +    +     +  L ++
Sbjct: 84  GEYSNRSQEVVENFAKKNNLPLIVKNIKEEFGLDIYKLSKTLKRSPCSVCGTIKRYLFNK 143

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A     ++I T H  DD+  T+      ++ E  +   G      +   +   +P    
Sbjct: 144 VAYDNGFSVIATGHNLDDEAATLLGNIL-NWGESYLARQGPVLPQTHPKLIKKVKPLYTL 202

Query: 173 RREDIRSFLLQRNISWCEDPS 193
             ++   ++L   I +  +  
Sbjct: 203 TEKENMYYVLLNKIEFLHEEC 223


>gi|94499113|ref|ZP_01305651.1| putative ATPase [Oceanobacter sp. RED65]
 gi|94428745|gb|EAT13717.1| putative ATPase [Oceanobacter sp. RED65]
          Length = 321

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 24/230 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++         +  A+++D   +        +V  +  
Sbjct: 51  GDRIMVCLSGGKDSYTMLDILQNLQKSAPVS-FELVAVNLD-QKQPG---FPEHVLPEYL 105

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L I + +V+                        R   +   A+ I A  +   H  DD
Sbjct: 106 DSLDIEYYIVNRDTYSVVKEKVPEGRTTCGLCSRLRRGTLYGFAEDIGANKVALGHHRDD 165

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            +ET+++         G  L+ M   +L D    I  RP   C+  DI +F   +     
Sbjct: 166 IVETMFLNMF-----YGARLAAMPPKLLSDDKRNIVIRPMAYCKESDIAAFSEYKQFPII 220

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
             P N     +  +R  ++  +   D        + F  ++    + +A 
Sbjct: 221 --PCNLCGSQENLQRQNIKAMLEQWDKEHPGRIQQIFNSMQNIAPSQMAD 268


>gi|73539933|ref|YP_294453.1| PP-loop [Ralstonia eutropha JMP134]
 gi|123626023|sp|Q476S4|TTCA_RALEJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|72117346|gb|AAZ59609.1| PP-loop [Ralstonia eutropha JMP134]
          Length = 312

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 92/277 (33%), Gaps = 24/277 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80
           +LV +SGG DS  +L  L ++   R+  + K  A+++D   +        +V  +     
Sbjct: 34  VLVCMSGGKDSYTMLSVLMALQK-RAPIQFKLIAMNLD-QKQPG---FPEHVLPEYLKST 88

Query: 81  RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + + +V                   +     R  +I   AK + A  I   H  DD + 
Sbjct: 89  GVEYVIVEADTYSIVKEKVPEGKTTCSLCSRLRRGVIYRTAKELGANKIALGHHRDDIVN 148

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDP 192
           T ++         G  +  M   +  D    I  RP   C  +DI ++           P
Sbjct: 149 TFFLNMF-----FGGKMKAMPPKLATDDGAHIVIRPLAYCSEKDIAAYARAMEFPII--P 201

Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            N     +  +R +V   ++  +          F  LR  V + +A       T     +
Sbjct: 202 CNLCGSQENLQRKKVSEMLQAWERENPGRIDNIFASLRNVVPSHLADTDLFPFTGLATGL 261

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRS 286
             + +  L  ++T     L  + +    ++    +  
Sbjct: 262 AKVDEASLFGETTFTQQPLVFAGSSDENRLEFVRFER 298


>gi|257439082|ref|ZP_05614837.1| PP-loop family protein [Faecalibacterium prausnitzii A2-165]
 gi|257198460|gb|EEU96744.1| PP-loop family protein [Faecalibacterium prausnitzii A2-165]
          Length = 284

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 27/194 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVRY 72
              I V +SGG DSM +   +  +         +   + +D    E       +  E+  
Sbjct: 40  GDKIAVCISGGKDSMLMAKLMQELQKHSDVP-FELVFLVMDPGYNEINRQKIESNAEL-- 96

Query: 73  VSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                  L I  ++         +  +          R   +   AK +    I   H F
Sbjct: 97  -------LHIPVTIFESNIFSVANNTEKNPCYLCARMRRGHLYSKAKELGCNKIALGHHF 149

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D +ET  M        + M       +      + + RP    R EDI ++    ++ +
Sbjct: 150 NDVIETTVMSMFYGSQMQAMPPKLHSTSFP---GMTLIRPMYCIREEDILAWKRYNDLEF 206

Query: 189 CEDPSNTDDRFERV 202
            +       RF   
Sbjct: 207 IQCAC----RFTEN 216


>gi|205830646|sp|Q16A99|TTCA_ROSDO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 274

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 15/175 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL  L+ +   R    ++  A ++D   +         + +  
Sbjct: 44  KDARWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 99

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            ++ + H V       +          L A     R   +   A+    + ++  H  DD
Sbjct: 100 KKMEVPHRVEYQDTYSIVMDKVPQGRTLCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 159

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            LET +M         G   +     +  + +L++ RP       D   F     
Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVSEADCDRFSTAMG 210


>gi|150396724|ref|YP_001327191.1| C32 tRNA thiolase [Sinorhizobium medicae WSM419]
 gi|205830634|sp|A6U9M6|TTCA_SINMW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|150028239|gb|ABR60356.1| PP-loop domain protein [Sinorhizobium medicae WSM419]
          Length = 293

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 79/239 (33%), Gaps = 29/239 (12%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59
             +  VR  +     L      LV VSGG DS  LL  L  +   R    ++  A ++D 
Sbjct: 45  RLLRQVRQALDDFGMLKGSKRWLVGVSGGKDSYSLLALLMDL-KWRGLLPVELVACNLDQ 103

Query: 60  -------HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYA 108
                  H L         Y+  +  R RI +     +V  K     T   +     R  
Sbjct: 104 GQPNFPKHVL-------PDYLQSIGVRHRIEYRDTYSIVKEKVPAGAT-YCSLCSRLRRG 155

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +   A+      ++  H  +D LET +M         G   S     +  + +L + RP
Sbjct: 156 NLYRIAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRP 211

Query: 169 FLRCRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                 +DI  F           D   + D  ER  ++  + DI+      K    + L
Sbjct: 212 LAYAAEDDIAKFAAAMEFPIIPCDLCGSQDGLERNAMKAMLSDIERRMPGRKDTMLRAL 270


>gi|86135818|ref|ZP_01054397.1| hypothetical protein MED193_16884 [Roseobacter sp. MED193]
 gi|85826692|gb|EAQ46888.1| hypothetical protein MED193_16884 [Roseobacter sp. MED193]
          Length = 295

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 83/254 (32%), Gaps = 19/254 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             LV +SGG DS  LL  LH +   R    +   A ++D   +         +     ++
Sbjct: 53  KWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPAFLEKM 108

Query: 81  RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + H +       +            A     R   +   A+    + ++  H  DD LE
Sbjct: 109 GVEHRIEYQDTYSIVMDKVPEGRTFCALCSRLRRGNLYRVAREEGCSAVILGHHRDDILE 168

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192
           T +M         G   +     +  + +L++ RP       D   F    +      D 
Sbjct: 169 TFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEVDCEKFAKAMDYPIIPCDL 224

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
             + D  +R +V++ +   + ++   +   F   R   N   + L+   L         I
Sbjct: 225 CGSQDGLQRQQVKQILDQWEANSPGRRQVMF---RALTNARPSHLLDPKLFDFAGLERKI 281

Query: 253 SQDILNIDSTLLFY 266
           S +  + D   L  
Sbjct: 282 SAESADSDEIPLLR 295


>gi|127512923|ref|YP_001094120.1| PP-loop domain-containing protein [Shewanella loihica PV-4]
 gi|205830628|sp|A3QEG3|TTCA_SHELP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|126638218|gb|ABO23861.1| PP-loop domain protein [Shewanella loihica PV-4]
          Length = 317

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 22/200 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++L  R+       A+++D   +    +++         L++ + 
Sbjct: 45  LSGGKDSYAMLDILVNLL-QRAPVNFNLVAVNLD-QKQPGFPEDILPA--YLDSLKVPYH 100

Query: 86  VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 101 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETMFLN 160

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195
                      L  M   +L D     + RP    R +DI  +   +       P N   
Sbjct: 161 MFYAGK-----LKAMPPKLLSDDGANVVIRPLAYSREKDIAEYAELKAFPII--PCNLCG 213

Query: 196 -DDRFERVRVRRFVRDIDLH 214
             +  +R  V+  ++  D  
Sbjct: 214 SQENLKRAAVKEMLKSWDKQ 233


>gi|256831234|ref|YP_003159962.1| PP-loop domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256580410|gb|ACU91546.1| PP-loop domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 249

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 19/220 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETAKDEVRYVSDV 76
             A I +AVSGG DS  +L  +  ++  R     ++   I ++    ET+      ++D 
Sbjct: 30  PGARIGLAVSGGIDSWVMLQVM--IMRQRIIPFPVELFVIHLNPGFDETSH---APLADW 84

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAA--------AREARYALISEHAKTINATLIMTAHTF 128
                +   + +                     A   R        +  N T +   H  
Sbjct: 85  MRAHGVPGHLETTDFGPRAHSAENRKKSPCFFCAWHRRKRFFD-ICRQYNLTHLALGHNT 143

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD + T +M   +     G+    +     +   L + RP L   +  I     Q  +  
Sbjct: 144 DDLVSTFFMNMLKTGKIYGL----VPKESYFGGKLTLIRPLLLLDKATITQACRQWKLPV 199

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            E+   + D+  R +       +      ++   F  LR 
Sbjct: 200 WENDCPSKDKTARSQTLNQALALCGGDKRIRTNMFNALRR 239


>gi|212635383|ref|YP_002311908.1| C32 tRNA thiolase [Shewanella piezotolerans WP3]
 gi|212556867|gb|ACJ29321.1| ATPase of the PP-loop [Shewanella piezotolerans WP3]
          Length = 280

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++   R+  K +  A+++D   +    +E+        +L +A+ 
Sbjct: 12  LSGGKDSYAMLDILVNLQ-QRAPIKFEIVAVNLD-QKQPGFPEEILPA--YLDKLGVAYH 67

Query: 86  VVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++                   +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 68  ILEKDTYSIVRDKIPEGKTTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETLFLN 127

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                   G   +     +  D    + RP    R +DI  +   +       P N 
Sbjct: 128 MF----FAGKMKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAELKQFPII--PCNL 178


>gi|159905700|ref|YP_001549362.1| PP-loop domain-containing protein [Methanococcus maripaludis C6]
 gi|159887193|gb|ABX02130.1| PP-loop domain protein [Methanococcus maripaludis C6]
          Length = 311

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 54/168 (32%), Gaps = 20/168 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + + +SGG DS+ +   L+     +     K  AI V+  +     D +      C   
Sbjct: 48  RVAMGLSGGKDSLVMAYILNEFY--KQIPNSKIIAIIVNEGIEGYRTDGIDAAIKFCEEH 105

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            I + +V +K+                       +     R  +++  +       +   
Sbjct: 106 NIEYKIVHFKDYLGTNLDEIVKLAKEKNLTMNPCSFCGVIRRKILNRVSLEEKCDFLAIG 165

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           H  DD  + V M       +K   L+ +  ++ +   +   +P  +  
Sbjct: 166 HNLDDVAQAVMMNYIEGDVKK---LAFLGKSLKHPKFVKRIKPLEKIP 210


>gi|20808825|ref|NP_623996.1| ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|254478816|ref|ZP_05092183.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
 gi|20517476|gb|AAM25600.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Thermoanaerobacter tengcongensis MB4]
 gi|214035271|gb|EEB75978.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653]
          Length = 300

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 22/201 (10%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  I+  + F +       +LV VSGG DSM L   L               A+ ++  +
Sbjct: 35  LKNIQKNKMFKKD----DKVLVVVSGGKDSMALWDVLVK-------EGYNVVAMYINLGI 83

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112
            E +      V +   +  +   V + K              +    +     +  L ++
Sbjct: 84  GEYSNRSQEVVENFAKKNNLPLIVKNIKEEFGLDIYKLSKTLKRSPCSVCGTIKRYLFNK 143

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A     ++I T H  DD+  T+      ++ E  +   G      +   +   +P    
Sbjct: 144 VAYDNGFSVIATGHNLDDEAATLLGNIL-NWGESYLARQGPVLPQTHPKLIKKVKPLYTL 202

Query: 173 RREDIRSFLLQRNISWCEDPS 193
             ++   ++L   I +  +  
Sbjct: 203 TEKENMYYVLLNKIEFLHEEC 223


>gi|298528399|ref|ZP_07015803.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512051|gb|EFI35953.1| PP-loop domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 248

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 14/184 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A + +AVSGG DS  L   L  +         +   + V+           + + D
Sbjct: 28  LWPGARVGIAVSGGVDSWVLARVLM-IRQKIVPFYFEIILLHVNPGFDPGNH---QPLVD 83

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                 +   + S        N             +R  ++ +  +  + T +   H  +
Sbjct: 84  WLGANPLPGHIQSTDIGPRAHNPGNTKSPCFLCSWSRRKVLFDLCRKYSLTHLALGHNAE 143

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D   T +M   +     G+          +  +L + RP L   ++ IR+   +  +   
Sbjct: 144 DLAATFFMNLIQTSRVDGLS----AREEFFQGSLTLIRPLLLVEKKYIRNAARRWELPVW 199

Query: 190 EDPS 193
           E+P 
Sbjct: 200 ENPC 203


>gi|320120350|gb|EFE28381.2| PP-loop family protein [Filifactor alocis ATCC 35896]
          Length = 276

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 82/246 (33%), Gaps = 26/246 (10%)

Query: 1   MFLSPIESVRF-----FVRSLV------YPAHILVAVSGGSDSMGLLIALHSVLSDRSFG 49
           M  + I+  R      F+R+++          I +A+SGG DS+ +   +  +       
Sbjct: 14  MERALIKKFRKYLWSPFIRAIIDFEMIQQNDRIAIAISGGKDSLVMAKLMQELYRHSDIP 73

Query: 50  KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAARE 104
                 IS++    +   +E   +++ C  + I        +     S  +         
Sbjct: 74  FEPVF-ISMNPGFSKE--NESSLIAN-CKAMDIPVHFFQSDIFEVTTSIAKENPCYMCAR 129

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            R   +   A+ +    +   H F+D  ET  M            L  +  T     N+ 
Sbjct: 130 MRRGALYGKAEELGCNKLALGHHFNDVNETTIMNLL-YTGCFKTMLPKLKSTNF--NNME 186

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCED---PSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
           I RP      E I  ++    I   +     +  +   +R  ++  +  + +    ++  
Sbjct: 187 IIRPLYYVYEEHIHKYMNYIQIFPMDCGCTVTKNEVSSKRKEIKNLIATLKIQNPNVEKC 246

Query: 222 KFQDLR 227
            F+ ++
Sbjct: 247 IFKSIQ 252


>gi|332528301|ref|ZP_08404303.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Hylemonella gracilis
           ATCC 19624]
 gi|332042246|gb|EGI78570.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Hylemonella gracilis
           ATCC 19624]
          Length = 314

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 17/175 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS G+L  L  + S R+  K    A+++D   +    D    +     
Sbjct: 51  GDRVMVCMSGGKDSYGMLDILMKLQS-RAPVKFTLVAVNLD-QKQPGFPD--HILPAYLK 106

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L I   +       +  KN      + +     R  ++   A+ +    +   H  DD 
Sbjct: 107 ELGIEFHIETQDTYSIVKKNIPEGKTMCSLCSRLRRGILYRVARELKCNKLALGHHRDDM 166

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185
           L+T ++         G  L GM   ++ D   +I  RP      +D+  +   R 
Sbjct: 167 LQTFFLNMF-----FGGKLKGMPPKLVSDNGEFIVIRPLAYVAEKDLIRWAAHRQ 216


>gi|261339969|ref|ZP_05967827.1| PP-loop family protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317886|gb|EFC56824.1| PP-loop family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 311

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++       L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLENLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIE 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + +A
Sbjct: 198 RFSQAKAFPII--PCNLCGSQPNLQRQVIGDMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTELFDFKGINHDSDVVDGGDLAFDREEI 284


>gi|254487850|ref|ZP_05101055.1| hypothetical protein RGAI101_2509 [Roseobacter sp. GAI101]
 gi|214044719|gb|EEB85357.1| hypothetical protein RGAI101_2509 [Roseobacter sp. GAI101]
          Length = 275

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 11/173 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75
                LV +SGG DS  LL  LH +   R    ++  A ++D   +      V   ++  
Sbjct: 44  PGGKWLVCLSGGKDSYTLLAVLHELQ-WRGLLPVEILACNLDQG-QPNFPATVLPEFLEK 101

Query: 76  VCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +  + RI +     +            A     R   +   A+    T ++  H  DD L
Sbjct: 102 MGVKHRIEYQDTYSIVMDKIPSGRTFCALCSRLRRGNLYRIAREEGCTAVVLGHHRDDIL 161

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 162 ETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEIDCEKFSKAMN 210


>gi|78049884|ref|YP_366059.1| C32 tRNA thiolase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78038314|emb|CAJ26059.1| putative PP-loop family ATPase [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 369

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 21/189 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     ++V +SGG DS  LL  L  +        + FS ++V+  L +   D   +V  
Sbjct: 112 IAPGDKVMVCLSGGKDSYTLLDMLLQLQRK---APVPFSLVAVN--LDQKQPDFPAHVLP 166

Query: 75  DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L +   +V                 + +     R   +  +A+T   T I   H 
Sbjct: 167 AYLRGLGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHH 226

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186
            DD + T +M            L+ M   +  D     + RP    R  DI ++   R  
Sbjct: 227 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQF 281

Query: 187 SWCEDPSNT 195
                P N 
Sbjct: 282 PII--PCNL 288


>gi|114765429|ref|ZP_01444544.1| hypothetical protein 1100011001294_R2601_17232 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542272|gb|EAU45302.1| hypothetical protein R2601_17232 [Roseovarius sp. HTCC2601]
          Length = 328

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 16/214 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             LV +SGG DS  LL  LH +   R    ++  A ++D   +         +      +
Sbjct: 86  KWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVELLACNLD---QGQPGFPATVLPKFLEDM 141

Query: 81  RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           ++ H +       +            A     R   +   A+    + ++  H  DD LE
Sbjct: 142 QVPHRIEYQDTYSIVVDKVPQGRTFCALCSRLRRGNLYRIAREEGCSAVVLGHHRDDILE 201

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192
           T +M         G   +     +  + +L++ RP       D   F    N      D 
Sbjct: 202 TFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVAEVDCEKFARAMNYPIIPCDL 257

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             + D  +R +V++ +   + ++   +   F+ L
Sbjct: 258 CGSQDGLQRQQVKQILDQWEKNSPGRRQVMFRSL 291


>gi|222054017|ref|YP_002536379.1| PP-loop domain protein [Geobacter sp. FRC-32]
 gi|254790131|sp|B9M1Y2|TTCA_GEOSF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|221563306|gb|ACM19278.1| PP-loop domain protein [Geobacter sp. FRC-32]
          Length = 252

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 17/174 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V VSGG DS  LL  L ++   R+  + +  AI++D        D    + +   
Sbjct: 29  GDRIAVGVSGGKDSYTLLHMLDTLRR-RAPVRYEVVAINIDSGYPGFRAD---IIEEHLH 84

Query: 79  RLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
                       H  +  +  +  +   +     +   +   A+  N   +   H  DD 
Sbjct: 85  ENGFTVHMEKTDHYGIIKEKRRLDSSYCSICARLKRGALYALAQQHNCNKLALGHHMDDF 144

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQR 184
           +ET+ +      A     L  M   +L D  L  + RP +    EDI  F    
Sbjct: 145 IETLLLNQFFVGA-----LKAMAPGMLADNGLTTVIRPLVYVSEEDIIQFSRNN 193


>gi|329577263|gb|EGG58727.1| PP-loop family protein [Enterococcus faecalis TX1467]
          Length = 119

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                I+VAVSGG DSM LL  +  V       +++     V+H LRE +  E +Y++  
Sbjct: 51  QPHQTIVVAVSGGVDSMALLTLMEQVAEK---EQLQLVVAHVNHQLREASAQEAQYLATY 107

Query: 77  CSRLRIAHS 85
           C +  + + 
Sbjct: 108 CQQRELTYY 116


>gi|110678773|ref|YP_681780.1| hypothetical protein RD1_1457 [Roseobacter denitrificans OCh 114]
 gi|109454889|gb|ABG31094.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 309

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 15/175 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL  L+ +   R    ++  A ++D   +         + +  
Sbjct: 79  KDARWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 134

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            ++ + H V       +          L A     R   +   A+    + ++  H  DD
Sbjct: 135 KKMEVPHRVEYQDTYSIVMDKVPQGRTLCALCSRLRRGHLYRIAREEGCSAVVLGHHRDD 194

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            LET +M         G   +     +  + +L++ RP       D   F     
Sbjct: 195 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFVYRPLAHVSEADCDRFSTAMG 245


>gi|254475553|ref|ZP_05088939.1| hypothetical protein RR11_1391 [Ruegeria sp. R11]
 gi|214029796|gb|EEB70631.1| hypothetical protein RR11_1391 [Ruegeria sp. R11]
          Length = 295

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 15/177 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R+       LV +SGG DS  LL  L+ +   R    +   A ++D   +         +
Sbjct: 46  RADGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVL 101

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   ++ + H +       +            A     R   +   A+    + ++  H
Sbjct: 102 PEFLEKMGVPHRIEYQDTYSIVMDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGH 161

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             DD LET +M         G   +     +  + +L++ RP       D   F   
Sbjct: 162 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARA 214


>gi|291279007|ref|YP_003495842.1| hypothetical protein DEFDS_0604 [Deferribacter desulfuricans SSM1]
 gi|290753709|dbj|BAI80086.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 300

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 73/209 (34%), Gaps = 27/209 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  +E      R       ILV VSGG DS+ L + L  +           + + ++  
Sbjct: 30  FIRQVEKAIKEFRMFSRKDKILVCVSGGKDSLVLWLVLSKL-------GYNVTGMYINLG 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVV------------SWKNSKPQTGLMAAAREARYAL 109
           + E ++     V +   +  + +++V            S K+ +P+  +       RY  
Sbjct: 83  IDEYSEKSKTKVINFAEKNNLKYTIVDLNELGYPIPELSKKSRRPECSVCGT--VKRY-Y 139

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISR 167
            ++ A   N  ++ T H  DD+   +         E    L      +  +  +     +
Sbjct: 140 FNKIAYDYNFDVVATGHNLDDEASRLLGNILHWNDEY---LEKQLPVLPAEGKMLKKKVK 196

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           P +R   ++I SF     + +  D     
Sbjct: 197 PLIRLTEQEIASFAFLNKVDYILDECPLS 225


>gi|90407731|ref|ZP_01215910.1| putative ATPase [Psychromonas sp. CNPT3]
 gi|90311200|gb|EAS39306.1| putative ATPase [Psychromonas sp. CNPT3]
          Length = 208

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 19/176 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L  +   R+   I F  I+++  L +       +V     
Sbjct: 37  GDRIMVCLSGGKDSFTMLDILLEL---RAAAPINFDIIAIN--LDQKQPGFPEHVLPQYL 91

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + L + + ++         +  +      +     R  ++   AK + AT I   H  DD
Sbjct: 92  TALGVEYRIIEENTYAIVKEKIEEGKTTCSLCSRLRRGILYRTAKEVGATKIALGHHRDD 151

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRN 185
            L T+ +    +       L  M   ++ D     I RP   C+ ++I ++   + 
Sbjct: 152 MLATMMLNMFFNGK-----LKSMPPKLVSDNGEHVIIRPLAYCKEKEIEAYARLKK 202


>gi|188574631|ref|YP_001911560.1| ATPase of the PP-loop superfamily [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|205830642|sp|B2SIG7|TTCA_XANOP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|188519083|gb|ACD57028.1| ATPase of the PP-loop superfamily [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 305

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 77/243 (31%), Gaps = 22/243 (9%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               I+V +SGG DS  +L  L  +        + F+ ++V+  L +   D   +V    
Sbjct: 50  PGDKIMVCLSGGKDSYTMLDMLLQLQRK---APVPFTLVAVN--LDQKQPDFPAHVLPAY 104

Query: 77  CSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              L +   +V         +       + +     R   +  +A+T   T I   H  D
Sbjct: 105 LDALGVPFDIVEQDTYSVVSRVVPAGKTMCSLCSRLRRGALYAYAQTHGVTKIALGHHRD 164

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D + T +M            L+ M   +  D     + RP    R   I ++   R    
Sbjct: 165 DIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREAHIAAYAQARQFPI 219

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
              P N     +    R+ V  +     + +  + + +   + +     +         +
Sbjct: 220 I--PCNLCGS-QENLQRQQVGKMLQQWDHEQPGRVEQIARALGDVRPEQLADRTLFDFLA 276

Query: 249 IIA 251
           +  
Sbjct: 277 LGR 279


>gi|319779066|ref|YP_004129979.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Taylorella
           equigenitalis MCE9]
 gi|317109090|gb|ADU91836.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Taylorella
           equigenitalis MCE9]
          Length = 293

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L  +L +R+  K +  A+++D   +        +V  +  
Sbjct: 26  GDRVMVCLSGGKDSYTLLEVL-RILQNRAPIKFELVAVNLD-QKQPG---FPEHVLPEYL 80

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +       +  +         +     R  ++   +  +  T I   H  DD
Sbjct: 81  ESIGVPYHIENQDTYSIVKRVIPEGKTTCSLCSRLRRGILYRVSDELGCTKIALGHHRDD 140

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            L T ++            L  M   ++ D     + RP      +DI  +  Q+     
Sbjct: 141 ILATFFLNLF-----YAAKLKTMPPKLVSDDGKHMVIRPLAFVAEKDIILYAKQKAFPII 195

Query: 190 EDPSNT 195
             P N 
Sbjct: 196 --PCNL 199


>gi|254798694|ref|YP_003058278.1| tRNA-Ile lysidine synthase [Parachlorella kessleri]
 gi|229915642|gb|ACQ90985.1| tRNA-Ile lysidine synthase [Parachlorella kessleri]
          Length = 502

 Score = 84.6 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 7/138 (5%)

Query: 11  FFVRSLVYPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
              ++ + P  I +   SGG DS+ L I L  +    +   I+  A+   H  +E     
Sbjct: 12  LLQKTKINPHDICICGFSGGQDSVLLFIILLHLKKQWN---IQIQALHFHHFWQEKNFFS 68

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              V  +    +I   +++   S+        AR  R   +   +    +  I+T HT  
Sbjct: 69  TYQVWKLNFVFKIPFYLIT---SEIFLETEKTARHWRQKGLERISNLEKSNKILTGHTAS 125

Query: 130 DQLETVYMRSQRDYAEKG 147
           D++ET      R  + +G
Sbjct: 126 DRIETALWHLIRGTSPQG 143



 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 7/111 (6%)

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL----HALYLKM 220
           + RP L   R DI  F  +  +    DPSN   R+ R R+R  +  +            +
Sbjct: 364 LLRPLLALHRNDIIFFSKKYLLPIVCDPSNEKLRWSRNRIRHQLFPLLRIFFNPNTEYLL 423

Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSI---IAISQDILNIDSTLLFYLL 268
             + ++ ++    +  LI K +   ++       I   +      +   LL
Sbjct: 424 SNYLEISIEEQKYIEYLIQKIIKYWLKKYKNDSDIKSQLQFFPKAIQRRLL 474


>gi|254514173|ref|ZP_05126234.1| pyridoxamine 5'-phosphate oxidase [gamma proteobacterium NOR5-3]
 gi|219676416|gb|EED32781.1| pyridoxamine 5'-phosphate oxidase [gamma proteobacterium NOR5-3]
          Length = 281

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 23/243 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+V +SGG DS  +L  L S+         +  A+ +D   ++        +     + 
Sbjct: 38  RIMVCLSGGKDSYAMLDILQSLQRSAPV-NFELIAVHMD---QKQPGYPPEILPAYLDKQ 93

Query: 81  RIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            I + ++          +              R   +   A++I AT I   H  DD +E
Sbjct: 94  NIEYHILEKDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAESIGATRIALGHHRDDIVE 153

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDP 192
           T+++         G  L  M   +L D     + RP   C+  D+  +           P
Sbjct: 154 TLFLNMF-----FGGSLKAMPPKLLSDDGKNVVIRPMAYCKEADLERYAQAMEFPII--P 206

Query: 193 SNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDL-RVKVNNAVAMLIPKYLTVHMRS 248
            N     D  +R  +++ + D +          F+ +  V  +      +  +L+++   
Sbjct: 207 CNLCGSQDNLQRQAIKKMLLDWERQYPGRTETIFKAIGNVSPSQLADRELFDFLSLNAAE 266

Query: 249 IIA 251
            +A
Sbjct: 267 PVA 269


>gi|152979071|ref|YP_001344700.1| PP-loop domain-containing protein [Actinobacillus succinogenes
           130Z]
 gi|205830592|sp|A6VP68|TTCA_ACTSZ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|150840794|gb|ABR74765.1| PP-loop domain protein [Actinobacillus succinogenes 130Z]
          Length = 312

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 80/244 (32%), Gaps = 24/244 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++            A+++D   +        +V     
Sbjct: 39  GDKVMVCLSGGKDSYTLLDILLNLKFSAPI-HFDIVAVNLD-QKQPG---FPEHVLPQYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP   C+ +DI  + + +     
Sbjct: 154 MLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII 208

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             P N        +R  V+  +   D          F  ++  V + +            
Sbjct: 209 --PCNLCGSQPNLQRQVVKEMLNTWDRQYPGRLETMFSAMQNVVPSHLCDPNLFDFKNIR 266

Query: 247 RSII 250
           R  I
Sbjct: 267 RGQI 270


>gi|83941454|ref|ZP_00953916.1| ATPase of the PP superfamily protein [Sulfitobacter sp. EE-36]
 gi|83847274|gb|EAP85149.1| ATPase of the PP superfamily protein [Sulfitobacter sp. EE-36]
          Length = 275

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 11/173 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75
                LV +SGG DS  LL  LH +   R    ++  A ++D   +      V   ++  
Sbjct: 44  PGGKWLVCMSGGKDSYTLLAILHELQ-WRGLLPVELVACNLDQG-QPNFPATVLPAFLEK 101

Query: 76  VCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +  + RI +     +            A     R   +   A+    T ++  H  DD L
Sbjct: 102 MGVKHRIEYQDTYSIVMDKIPAGRTFCALCSRLRRGHLYRIAREEGCTAVVLGHHRDDIL 161

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 162 ETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCEKFSTAMN 210


>gi|254490506|ref|ZP_05103692.1| hypothetical protein MDMS009_838 [Methylophaga thiooxidans DMS010]
 gi|224464250|gb|EEF80513.1| hypothetical protein MDMS009_838 [Methylophaga thiooxydans DMS010]
          Length = 288

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 22/230 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L ++   R    I F  I+V+  L +       +V  +  
Sbjct: 37  GDKVMVCLSGGKDSYTMLDILINL---RDHAPINFELIAVN--LDQKQPGFPEHVLPEYL 91

Query: 78  SRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + + + + ++                         R   +  +A+    T I   H  DD
Sbjct: 92  ASIGVPYHIIEKDTYSIVKEVVPEGKTTCGICSRLRRGSLYGYARQNGITKIALGHHRDD 151

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+++        K M    + D    D    + RP    +  DI  +          
Sbjct: 152 IIETLFLNMFYGSKIKAMPPKLLSD----DKTNIVIRPLCYAKESDIVKYSDAMQFPII- 206

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            P N     +  +R  ++  ++  +          F+ ++    + +A L
Sbjct: 207 -PCNLCGSQENLQRQVIKDMLQGWEKEHPGRLENIFRSIQNLSPSQLADL 255


>gi|206900215|ref|YP_002251379.1| Veg136 protein [Dictyoglomus thermophilum H-6-12]
 gi|206739318|gb|ACI18376.1| Veg136 protein [Dictyoglomus thermophilum H-6-12]
          Length = 318

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 35/216 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+  + F ++      ILVAVSGG DS+ L   L+S+  +     I          + 
Sbjct: 36  KAIKKYKMFEKT----DKILVAVSGGKDSLALWDILNSLGYNSDGLYIDL-------GIS 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE------------ARYALIS 111
           E ++              +   VVS K+     G+   A +             RY +++
Sbjct: 85  EYSEKSKEVAQKFAESRNLKLHVVSIKDI-YGVGIKEIAHKNRKPPCSTCGVIKRY-IMN 142

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPF 169
             AK +   +I T H  DD  E+  +        +   L      +  D        +P 
Sbjct: 143 LTAKELQYKVIATGHNLDD--ESAIL-LGNILHWQIDYLKAQSPILFEDEAGFARKVKPL 199

Query: 170 LRCRREDIRSFLLQRNISWCEDPSN-----TDDRFE 200
            R    +  ++ + + I +  D           R++
Sbjct: 200 YRISEYETSAYCIMKKIEYILDECPMSIDAQSLRYK 235


>gi|223995303|ref|XP_002287335.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976451|gb|EED94778.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 492

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 83/240 (34%), Gaps = 30/240 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +  I         +     +L+ +SGG DS+ LL  L          K +    ++D  
Sbjct: 136 MMKFITQAMIQWEMIQEGDKLLLGLSGGKDSLSLLHCLLEFQRKLP-TKFEIEVCTIDPM 194

Query: 62  --------LRETAKDEVRYVSDVCSRLR------IAHSVVSWKNSKPQTGLMAAAREARY 107
                   L       + YV  +  +        +A +  S K+    + L +     + 
Sbjct: 195 TPSFDPSPL-------IPYVESLGLKYHYIRDDIVARANTSGKDGSTVSSLCSFCARMKR 247

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             +   A+  N   ++ A   DD  E+  M    +   +    +   +  +   ++ + R
Sbjct: 248 GNLYTCARKNNCNKLVLAQHLDDCAESFLMSVMHNGFVR----TMKANYKINAGDVSVIR 303

Query: 168 PFLRCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDL--HALYLKMKKF 223
           P + CR   +  F    N+       P+  ++  ER R+++ +   +     LY  +++ 
Sbjct: 304 PLVYCRESLMTDFAKSNNLPVINENCPACFEEPKERARIKKLLSREETLYPNLYDHIRRA 363


>gi|124516144|gb|EAY57652.1| probable ATPase, PP-loop superfamily protein [Leptospirillum
           rubarum]
          Length = 307

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 81/240 (33%), Gaps = 26/240 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ILVAVSGG DS+ L   L+ +         + +   +D  +   + + +       
Sbjct: 46  KNDRILVAVSGGKDSLALWDILNRL-------GYRTTGFHLDLGIGGYSGESLEKTRAFA 98

Query: 78  SRLRIAHSVVSWKNSKPQT----------GLMAAAREARYALISEHAKTINATLIMTAHT 127
            R  +   V S       +             +A   ++  L +  A+ +   ++ T H 
Sbjct: 99  LRYGLTLHVESLVQEVGASVANIAELTNRPPCSACGVSKRHLFNRAAQKLECQVVATGHN 158

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSFLLQRN 185
            DD+      R   +      G     +  L D    +   +P  R   +++ ++   + 
Sbjct: 159 LDDEAS----RLLGNILHWQDGYLEKQNPALPDEGGLVRKVKPLNRLTEKEMAAYAFLKG 214

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK---KFQDLRVKVNNAVAMLIPKYL 242
           I++           +++  ++ +  ++  +   K      F D R +     A   P YL
Sbjct: 215 INYVVHECPMSVNAKQLFYKKIMNQVEQESPGTKQAFYFGFLDRRSRFYPEKAEEAPAYL 274


>gi|330998361|ref|ZP_08322185.1| PP-loop family protein [Paraprevotella xylaniphila YIT 11841]
 gi|329568467|gb|EGG50272.1| PP-loop family protein [Paraprevotella xylaniphila YIT 11841]
          Length = 242

 Score = 84.2 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 30/216 (13%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-----ETAKDEVRYVSDVCSR 79
            +SGG DS+ LL  +    +     K+  +A+ V    R       +     Y+ D  + 
Sbjct: 36  GLSGGKDSLALLDFMAR-RARIHRPKLTLTALHV----RMTNIAYESD--TAYLEDFAAA 88

Query: 80  LRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             +   V       ++  +          R  ++   A+ ++   I   H  DD L T+ 
Sbjct: 89  RGVRLIVRETSFDPSTDTRKSPCFLCSWNRRKMLFTVAQELSCHKIALGHHQDDILHTLL 148

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-------ISWC 189
           +      + +G   +      +    + I RP    + +D+ ++   +          + 
Sbjct: 149 LNL----SFQGQFGTMPVRLQMRKFPMTIIRPLCMVQEKDLAAWAELQGYRKQKKLCPYE 204

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            D   +D +    ++   +  ++  A Y      + 
Sbjct: 205 TDSHRSDIK----QIFGQIEQLNPEARYSMWNAMEQ 236


>gi|90416674|ref|ZP_01224604.1| putative ATPase [marine gamma proteobacterium HTCC2207]
 gi|90331427|gb|EAS46663.1| putative ATPase [marine gamma proteobacterium HTCC2207]
          Length = 278

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 22/229 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L  + S     K +  A+++D   +        +V  +  
Sbjct: 34  GDRIMVCLSGGKDSYAMLDILMGLQSSAPI-KFELVAVNLD-QKQPG---FPEHVLPEYL 88

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L I + ++                   +     R   +   A+ I  T +   H  DD
Sbjct: 89  DKLDIEYHILEKDTYSIVTSKVPEGKTYCSLCSRLRRGTLYGFAEQIGCTKVALGHHRDD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+++        K M    + D    D    + RP   CR  D+ +    +      
Sbjct: 149 IVETLFLNMFYQSKLKAMPPKLLSD----DKKNIVIRPLAYCRESDLVALAELKEFPII- 203

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            P N     D  +R  V+  +   +          F  ++    + +A 
Sbjct: 204 -PCNLCGSQDGLQRNVVKDMLVQWERQYPGRVESIFSSIKNVSPSQLAD 251


>gi|168704845|ref|ZP_02737122.1| tRNA(Ile)-lysidine synthetase [Gemmata obscuriglobus UQM 2246]
          Length = 173

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 60/173 (34%), Gaps = 8/173 (4%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI------ 211
           + D    + RP L   R D+ ++L +    +  D SN D +F R RVR  +  +      
Sbjct: 1   MKDGGRPLVRPLLAVTRADVVTYLNELGQPFRTDSSNADPKFTRNRVRHELLPLLRTFNP 60

Query: 212 -DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILN-IDSTLLFYLLR 269
             + AL    +   +    V  A A L+ +         + +    L      L    LR
Sbjct: 61  EIVGALAHLAEHANEAHDIVIAAAADLLSRAERPPAAGTLILDAATLRSASPGLARAALR 120

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAV 322
           +     G  +S   + + ER +         C   G V +      + +TR  
Sbjct: 121 LVWEREGWPVSDMTFAAWERAVSVAGGSASACDFPGGVRMRGAGKVVQLTRRA 173


>gi|49083500|gb|AAT51049.1| PA1192 [synthetic construct]
          Length = 275

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 85/246 (34%), Gaps = 34/246 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS  +L  L  +        I+F  ++V+          H L      
Sbjct: 32  GDKVMVCLSGGKDSYTMLDILLYLQK---VAPIRFEIVAVNMDQKQPGFPEHVL------ 82

Query: 69  EVRYVSDVCSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +     I     +SVV  K  + +T   +     R   +   A  I AT +  
Sbjct: 83  -PEYLKSIGVEYHIVEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTFADEIGATKMAL 140

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183
            H  DD LET ++         G  L  M   +L D     + RP   C  +DI ++   
Sbjct: 141 GHHRDDILETFFLNMF-----YGGTLKAMPPKLLADDGRNVVIRPLAYCSEKDIEAYSQL 195

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           +       P N     +    R+ V+++ L        + + +   + N V   +     
Sbjct: 196 KEFP--ITPCNLCGS-QENLQRQVVKEMLLEWERKSPGRTEIMFRALQNVVPSQLADRNL 252

Query: 244 VHMRSI 249
               ++
Sbjct: 253 FDFANL 258


>gi|332161706|ref|YP_004298283.1| C32 tRNA thiolase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665936|gb|ADZ42580.1| C32 tRNA thiolase [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861073|emb|CBX71341.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia
           enterocolitica W22703]
          Length = 313

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 84/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++            A+++D   ++     V  +     
Sbjct: 39  GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD---QKQPGFPVDILPAYLD 94

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 95  KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVARAYPII-- 208

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +             +
Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKNITHN 268

Query: 249 IIAISQDILNIDSTLL 264
              +    L  D   L
Sbjct: 269 SEIVDGGDLAFDREEL 284


>gi|318605799|emb|CBY27297.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 313

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 84/256 (32%), Gaps = 20/256 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++            A+++D   ++     V  +     
Sbjct: 39  GDRVMVCLSGGKDSYTMLDILQNLQKSAPI-NFTLIAVNLD---QKQPGFPVDILPAYLD 94

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 95  KQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDI 154

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           L+T+++        KGM    M D    D    + RP   CR +DI  F + R       
Sbjct: 155 LQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVARAYPII-- 208

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  ++  +RD D          F  ++  V + +             +
Sbjct: 209 PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKNITHN 268

Query: 249 IIAISQDILNIDSTLL 264
              +    L  D   L
Sbjct: 269 SEIVDGGDLAFDREEL 284


>gi|83854931|ref|ZP_00948461.1| ATPase of the PP superfamily [Sulfitobacter sp. NAS-14.1]
 gi|83842774|gb|EAP81941.1| ATPase of the PP superfamily [Sulfitobacter sp. NAS-14.1]
          Length = 275

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 11/173 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSD 75
                LV +SGG DS  LL  LH +   R    ++  A ++D   +      V   ++  
Sbjct: 44  SGGKWLVCMSGGKDSYTLLAILHELQ-WRGLLPVELVACNLDQG-QPNFPATVLPAFLEK 101

Query: 76  VCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           +  + RI +     +            A     R   +   A+    T ++  H  DD L
Sbjct: 102 MGVKHRIEYQDTYSIVMDKIPAGRTFCALCSRLRRGHLYRIAREEGCTAVVLGHHRDDIL 161

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           ET +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 162 ETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCEKFSTAMN 210


>gi|255292072|dbj|BAH90552.1| putative ATPase [uncultured bacterium]
 gi|255292619|dbj|BAH89729.1| putative ATPase [uncultured bacterium]
          Length = 291

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 66/187 (35%), Gaps = 21/187 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS  LL  L ++   R    I F  ++V+  L +       +V  + 
Sbjct: 35  AGDRVMVCISGGKDSYTLLDILMNL---RLNAPIDFEIVAVN--LDQKQPGFPAHVLPEY 89

Query: 77  CSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFD 129
              + +   ++          L              R  ++  HA+ I A  I   H  D
Sbjct: 90  FESVGVPFDILEEDTYSIVQSLTPEGKTTCPVCSRMRRGILYSHARRIGADKIALGHHLD 149

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQRNISW 188
           D +ET+++         G  L  M   +  D     + RP   CR +DI  +   R    
Sbjct: 150 DVVETLFLNLF-----YGGRLKAMPPKLRSDDGANMVIRPLYYCREKDIARWADFRGYPI 204

Query: 189 CEDPSNT 195
              P N 
Sbjct: 205 I--PCNL 209


>gi|167624131|ref|YP_001674425.1| PP-loop domain-containing protein [Shewanella halifaxensis HAW-EB4]
 gi|205830627|sp|B0TUN8|TTCA_SHEHH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|167354153|gb|ABZ76766.1| PP-loop domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 311

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 17/177 (9%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  +L  L ++   R+  K +  A+++D   +    +++         L +A+ 
Sbjct: 44  LSGGKDSYAMLDILLNLQ-QRAPIKFEIVAVNLD-QKQPGFPEDILPA--YLDTLGVAYH 99

Query: 86  VVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           ++        K+  P+     +     R   +   A+ I AT I   H  DD +ET+++ 
Sbjct: 100 ILEKDTYSIVKDKIPEGKTTCSLCSRLRRGTLYGFAQKIGATKIALGHHRDDIIETMFLN 159

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                   G   +     +  D    + RP    R +DI  +   +       P N 
Sbjct: 160 MF----FAGKMKAMPPKLLSDDGANMVIRPLAYSREKDIAEYAGLKGFPII--PCNL 210


>gi|114563191|ref|YP_750704.1| PP-loop domain-containing protein [Shewanella frigidimarina NCIMB
           400]
 gi|122299732|sp|Q082E9|TTCA_SHEFN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|114334484|gb|ABI71866.1| PP-loop domain protein [Shewanella frigidimarina NCIMB 400]
          Length = 312

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 19/178 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+  K +  A+++D   +        +V      +L +A+
Sbjct: 46  LSGGKDSYTMLDILLTLQ-QRAPIKFEIVAVNLD-QKQPG---FPEHVLPAYLDKLGVAY 100

Query: 85  SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++                   +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 101 HILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQHIGATKIALGHHRDDIIETMFL 160

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                    G   +     +  D    + RP   CR +DI  +   ++      P N 
Sbjct: 161 NMF----YAGKQKAMPPKLLSDDGANMVIRPLAYCREKDIEEYSTLKSFPII--PCNL 212


>gi|256811396|ref|YP_003128765.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
 gi|256794596|gb|ACV25265.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
          Length = 296

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 17/182 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     ILVAVSGG D       L  +               ++  +++ ++  +  V
Sbjct: 43  KMLNKDEKILVAVSGGKDGHAAAWVLKKL-------GYNIELFHINLGIKDFSEISLETV 95

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-------ARYALISEHAKTINATLIMTAH 126
             +  +L +   VV+ K+   +T      ++        RY L+++        +I+T H
Sbjct: 96  KKLAEKLEVPLHVVNLKDITGKTMEDVRGKKCSICGTTKRY-LMNKFGYENGFDVIVTGH 154

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD++ +  + +  ++  + +          +D  L   + F     E I  +     I
Sbjct: 155 NLDDEV-SFILNNILNWNIRYLA-KHEPVLPAHDKFLKKVKIFFEIEEELILKYAEAEGI 212

Query: 187 SW 188
            +
Sbjct: 213 PF 214


>gi|188585053|ref|YP_001916598.1| PP-loop domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349740|gb|ACB84010.1| PP-loop domain protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 313

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 75/196 (38%), Gaps = 24/196 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           I++++ F + L     ++VA+SGG DS+ L   L            K  A  +D  + E 
Sbjct: 35  IKAIKKF-KMLPPNEKVIVAISGGKDSLALWDMLLD-------RGYKADAFYIDLGIDEY 86

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS-----------WKNSKPQTGLMAAAREARYALISEHA 114
           +K  +        ++      +S              + P++   A     RY +++  A
Sbjct: 87  SKTSMEKAQSFAEKVSGNLYTISLPKLYNTGIKEISRNNPRSACSACGLIKRY-IMNIFA 145

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCR 173
           K  N   + T H  DD+  ++   + R        LS    ++  +  L    +P  R  
Sbjct: 146 KYGNYHAVATGHNLDDEASSLLGNTLRWQTGY---LSRQSPSMPSNNGLAKKIKPLCRLA 202

Query: 174 REDIRSFLLQRNISWC 189
            ++  ++ + +NI + 
Sbjct: 203 EKETAAYCITKNIDYI 218


>gi|325918575|ref|ZP_08180685.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Xanthomonas vesicatoria ATCC 35937]
 gi|325535204|gb|EGD07090.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Xanthomonas vesicatoria ATCC 35937]
          Length = 304

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 19/183 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     I+V +SGG DS  LL  L  +        + F+ ++V+  L +   D   +V  
Sbjct: 48  IAAGDKIMVCLSGGKDSYTLLDMLLHLQRK---APVPFTLVAVN--LDQKQPDFPAHVLP 102

Query: 75  DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L +   +V                 + +     R   +  +A+    T I   H 
Sbjct: 103 AYLRELGVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHH 162

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNI 186
            DD + T +M            L+ M   +  D     + RP    R  DI  +   R  
Sbjct: 163 RDDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAQYAQARQF 217

Query: 187 SWC 189
              
Sbjct: 218 PII 220


>gi|62180219|ref|YP_216636.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224583854|ref|YP_002637652.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|75483213|sp|Q57P06|TTCA_SALCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790144|sp|C0Q3V6|TTCA_SALPC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|62127852|gb|AAX65555.1| putative ATPase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|224468381|gb|ACN46211.1| hypothetical protein SPC_2080 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322714691|gb|EFZ06262.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 311

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 88/269 (32%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++       L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEPLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIV 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   +       P N        +R  +   +RD D          F  ++  V + + 
Sbjct: 198 RFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLC 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
                           +    L  D   +
Sbjct: 256 DTNLFDFKGITHGSEVVDGGDLAFDREEI 284


>gi|77464643|ref|YP_354147.1| PP family ATPase [Rhodobacter sphaeroides 2.4.1]
 gi|123590901|sp|Q3IYY8|TTCA_RHOS4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|77389061|gb|ABA80246.1| ATPases of the PP superfamily [Rhodobacter sphaeroides 2.4.1]
          Length = 292

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 15/172 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL  LH +   R    +   A ++D   +         + +  
Sbjct: 44  RGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 99

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           SR+ + H +       +            A     R   +   A+    + ++  H  DD
Sbjct: 100 SRMGVPHRIEYQDTYSIVMDKIPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 159

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            LET +M         G   +     +  D +L++ RP       D   F  
Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEDGDLFVYRPLAFVAEADCEKFAR 207


>gi|161829910|ref|YP_001596664.1| C32 tRNA thiolase [Coxiella burnetii RSA 331]
 gi|205830575|sp|A9NCM4|TTCA_COXBR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|161761777|gb|ABX77419.1| PP-loop family protein [Coxiella burnetii RSA 331]
          Length = 256

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 18/243 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ++V +SGG DS  LL  L+S+  +    K    A  +D   +     +   +
Sbjct: 22  RMINTGDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSAL 77

Query: 74  SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                  +I + +++                  +     R  +I  +A+    + I   H
Sbjct: 78  RGWLDDKKIPYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGH 137

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++T+ M    +   + M    + D   +     + RP   C+  DI  + +++  
Sbjct: 138 HRDDLIQTLLMSVFYNGQIRSMPPKLLSDNRRH----VLIRPLAYCQERDIIKYAMEQQF 193

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
                P N     ++  +R+ V+ +         K   ++   ++N     +  +   + 
Sbjct: 194 PLI--PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNF 250

Query: 247 RSI 249
           R +
Sbjct: 251 REL 253


>gi|291617567|ref|YP_003520309.1| YdaO [Pantoea ananatis LMG 20103]
 gi|291152597|gb|ADD77181.1| YdaO [Pantoea ananatis LMG 20103]
          Length = 277

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 84/264 (31%), Gaps = 36/264 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--------HCLRETAKDEV 70
              I+V +SGG DS  +L  L S+            A+++D        H L E      
Sbjct: 5   GDRIMVCLSGGKDSYTMLEILRSLQKSAPVS-FSLVAVNLDQKQPGFPGHILPE------ 57

Query: 71  RYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIM 123
                      + + +V        K+  P+     +     R  ++   A  +  T I 
Sbjct: 58  -----YLDAQGVEYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYRTATELGCTKIA 112

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD L+T+++        KGM    M D    D    + RP   CR +DI  F   
Sbjct: 113 LGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIIRFSEA 168

Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           R       P N        +R  V   +RD D          F  ++  V + +A +   
Sbjct: 169 RQFPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNVVPSHMADINLF 226

Query: 241 YLTVHMRSIIAISQDILNIDSTLL 264
                      +    L  D   L
Sbjct: 227 DFKGIQHGDAVVDGGDLAFDRETL 250


>gi|83644992|ref|YP_433427.1| C32 tRNA thiolase [Hahella chejuensis KCTC 2396]
 gi|123533751|sp|Q2SK22|TTCA_HAHCH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|83633035|gb|ABC29002.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Hahella chejuensis KCTC 2396]
          Length = 285

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 22/216 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   +    I F  I+V+  L +       +V  +  S L + +
Sbjct: 48  LSGGKDSYAMLDILLNL---KKHAPISFEVIAVN--LDQKQPGFPEHVLPEYLSSLGVEY 102

Query: 85  SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            V+                         R  ++ + A     T I   H  DD +ET+++
Sbjct: 103 YVIERDTYSIVKDKIPEGKTTCGLCSRLRRGILYDFAVEHKCTKIALGHHRDDIMETLFL 162

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195
                   + M           D    + RP   CR +DI  +   R       P N   
Sbjct: 163 NMFYGGKMRAM----PPKLKSDDGRNIVIRPLAYCREKDIERYAGLREFPII--PCNLCG 216

Query: 196 -DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             +  +R  ++  ++D D          F+ ++  +
Sbjct: 217 SQENLQRQNIKMMLQDWDKRFPGRLENMFRAVQNVL 252


>gi|56477339|ref|YP_158928.1| C32 tRNA thiolase [Aromatoleum aromaticum EbN1]
 gi|81357490|sp|Q5P3T7|TTCA_AZOSE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|56313382|emb|CAI08027.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Aromatoleum aromaticum EbN1]
          Length = 316

 Score = 83.8 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/251 (20%), Positives = 94/251 (37%), Gaps = 21/251 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79
           ++V VSGG DS  LL  L ++  +R+    +  A+++D   +     EV   Y   +   
Sbjct: 53  VMVCVSGGKDSYTLLSCLLAL-RERAPVDFRIIAMNLD-QKQPGFPAEVLPAYFESIGVE 110

Query: 80  LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            RI     +S+V  K  + +T   +     R  +I   A+ + AT I   H  DD LET+
Sbjct: 111 YRIVTEDTYSIVKDKIPEGKT-TCSLCSRLRRGIIYRVARELGATRIALGHHRDDMLETL 169

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           ++         G  +  M   ++ D     + RP   C   DI  F           P N
Sbjct: 170 FLNLF-----FGGKIKAMPPKLVSDNGEHVVIRPLAYCTEADIAKFARTMEFPII--PCN 222

Query: 195 TDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQ 254
                +    R+ ++ +          + + +   +   V   +        R+   +++
Sbjct: 223 LCGS-QENAQRKQIKTMLQGWAREHPGRIESIATALGQVVPSHLADASLFDFRN---LTR 278

Query: 255 DILNIDSTLLF 265
           D L  +  + F
Sbjct: 279 DTLVAEGDIAF 289


>gi|227822181|ref|YP_002826152.1| C32 tRNA thiolase [Sinorhizobium fredii NGR234]
 gi|254790136|sp|C3MD80|TTCA_RHISN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|227341181|gb|ACP25399.1| putative ATPase [Sinorhizobium fredii NGR234]
          Length = 296

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 79/238 (33%), Gaps = 27/238 (11%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59
             +  VR        L      LV VSGG DS  LL  L  +   R    ++  A ++D 
Sbjct: 46  RLLRQVRQAFDGFGMLKGSKRWLVGVSGGKDSYSLLALLMDL-KWRGLLPVELIACNLDQ 104

Query: 60  -------HCLRETAKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQTGL--MAAAREARYAL 109
                  H L         Y++ +  R RI +    S    K  TG    +     R   
Sbjct: 105 GQPNFPKHIL-------PDYLASIGVRHRIEYRDTYSIVKEKVPTGATYCSLCSRLRRGN 157

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A+      ++  H  +D LET +M         G   S     +  + +L + RP 
Sbjct: 158 LYRIAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLTVLRPL 213

Query: 170 LRCRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                +D+  F           D   + D  ER  ++  + DI+      K    + L
Sbjct: 214 TYAAEDDLAKFAAAMEFPIIPCDLCGSQDGLERNAMKAMLADIERRMPGRKDTMLRAL 271


>gi|255307424|ref|ZP_05351595.1| hypothetical protein CdifA_12587 [Clostridium difficile ATCC 43255]
          Length = 286

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAI----SV 58
             ++++R + + +     I VA+SGG DS+ +      +         I+F A+      
Sbjct: 39  KFMKAIRDY-KLVEEGDKIAVAISGGKDSILMAKMFQELKKHGQVNFDIEFIAMDPGYHA 97

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEH 113
           +  +R       + + D C  L I        +    +   +          R   +   
Sbjct: 98  N--IR-------QLLIDNCEYLNIPIHLFDSRIFEIADEIAKDYPCYMCARMRRGALYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H +DD +ET  +            L  +  T      + I RP    R
Sbjct: 149 AEELGCNKLALGHHYDDVIETTMLNLL-CAGNFKTMLPKLNSTNF--EGIKIIRPLYYIR 205

Query: 174 REDIRSFLLQRNI 186
            E I  F+    I
Sbjct: 206 EEHIIRFIQNSGI 218


>gi|85712899|ref|ZP_01043940.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica
           OS145]
 gi|85693279|gb|EAQ31236.1| ATPase of the PP-loop superfamily protein [Idiomarina baltica
           OS145]
          Length = 306

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 19/172 (11%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
           +   I+V +SGG DS  LL  L  +   +    I F  ++V+  L +       +V  + 
Sbjct: 37  HNDKIMVCLSGGKDSYTLLDTLMYL---KRVAPISFDIVAVN--LDQKQPGFPEHVLPNY 91

Query: 77  CSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFD 129
            + L + + +V        K+  P+     +     R  ++ + AK + AT I   H  D
Sbjct: 92  LNSLGVDYEIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILYKTAKRLGATKIALGHHRD 151

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSF 180
           D +ET+++         G  L  M   ++ D     + RP   CR +DI  +
Sbjct: 152 DMIETLFLNMF-----YGGKLKSMPPKLVSDNGEHVVIRPLAFCREKDIARY 198


>gi|84517258|ref|ZP_01004613.1| hypothetical protein SKA53_00425 [Loktanella vestfoldensis SKA53]
 gi|84508933|gb|EAQ05395.1| hypothetical protein SKA53_00425 [Loktanella vestfoldensis SKA53]
          Length = 283

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 16/214 (7%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             LV +SGG DS  LL  L+ +   R    +   A ++D   +         + +  +R+
Sbjct: 51  KWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFLARM 106

Query: 81  RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + H +       +            A     R   +   A+    + ++  H  DD LE
Sbjct: 107 GVPHRIEYQDTYSIVMDKVPAGRTFCALCSRLRRGNLYRVAREEGCSAVVLGHHRDDILE 166

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDP 192
           T +M         G   +     +  + +L++ RP       D   F           D 
Sbjct: 167 TFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCEKFAQAMQYPIIPCDL 222

Query: 193 SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             + D  +R +V++ +   + ++   +   F+ L
Sbjct: 223 CGSQDGLQRQQVKQILDGWERNSPGRRQVMFRSL 256


>gi|302348716|ref|YP_003816354.1| ATPase, PP-loop superfamily [Acidilobus saccharovorans 345-15]
 gi|302329128|gb|ADL19323.1| ATPase, PP-loop superfamily [Acidilobus saccharovorans 345-15]
          Length = 338

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 16/180 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL- 80
           +LVAVSGG DS+ L+  L  +  +     +   A+ +   + E ++  +    D CS+  
Sbjct: 66  LLVAVSGGKDSVTLMNVLDEIAPELG---VNIVAVHIVLGMGEFSEKSLEAFRDSCSKAK 122

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREAR----------YALISEHAKTINATLIMTAHTFDD 130
            +    V  K            R  R            +++  A ++ A+ I T H  +D
Sbjct: 123 NVKCVTVDLKELLGMYMPEIIRRSRRPACSVCGLVKRYILNAMAVSLGASSIATGHHMND 182

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +            +    L  + ++      +   RP      ++ R+F+    +++ +
Sbjct: 183 LMTYAIKNFMEQKLDNITKLGPVSES--EGSAVKRVRPLYDIYEDETRAFVKVYGLNYVD 240


>gi|126463483|ref|YP_001044597.1| C32 tRNA thiolase [Rhodobacter sphaeroides ATCC 17029]
 gi|221640555|ref|YP_002526817.1| PP-loop domain-containing protein [Rhodobacter sphaeroides KD131]
 gi|332559536|ref|ZP_08413858.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rhodobacter
           sphaeroides WS8N]
 gi|205830639|sp|A3PNA9|TTCA_RHOS1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254790137|sp|B9KNZ4|TTCA_RHOSK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|126105147|gb|ABN77825.1| PP-loop domain protein [Rhodobacter sphaeroides ATCC 17029]
 gi|221161336|gb|ACM02316.1| PP-loop domain protein [Rhodobacter sphaeroides KD131]
 gi|332277248|gb|EGJ22563.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Rhodobacter
           sphaeroides WS8N]
          Length = 292

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 15/172 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  LV +SGG DS  LL  LH +   R    +   A ++D   +         + +  
Sbjct: 44  RGARWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPEFL 99

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           SR+ + H +       +            A     R   +   A+    + ++  H  DD
Sbjct: 100 SRMGVPHRIEYQDTYSIVMDKIPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGHHRDD 159

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            LET +M         G   +     +  D +L++ RP       D   F  
Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEDGDLFVYRPLAFVAEADCEKFAR 207


>gi|242278578|ref|YP_002990707.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121472|gb|ACS79168.1| PP-loop domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 310

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 17/138 (12%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R+L+ P   +LVA+SGG DS+GL+ AL  +           + + +D  + E++      
Sbjct: 41  RNLLEPDDKVLVALSGGKDSLGLMYALSEL-------GYDVTGLHIDLGIYESSIKARAV 93

Query: 73  VSDVCSRLRIAHSVVSWKNSKP---------QTGLMAAAREARYALISEHAKTINATLIM 123
           V   C        VV  +             +  + A   + +    ++ A     T + 
Sbjct: 94  VEGFCKDKGYPLRVVELEKEGVPMPLIKKHIRRPICAICGKFKRHYFNKVAIEEGYTALA 153

Query: 124 TAHTFDDQLETVYMRSQR 141
           T H  DD++  ++  + R
Sbjct: 154 TGHNLDDEVARLFANTLR 171


>gi|119476323|ref|ZP_01616674.1| putative ATPase [marine gamma proteobacterium HTCC2143]
 gi|119450187|gb|EAW31422.1| putative ATPase [marine gamma proteobacterium HTCC2143]
          Length = 333

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 74/222 (33%), Gaps = 22/222 (9%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L  +         +  A+++D   +        ++  +   +L +  
Sbjct: 78  LSGGKDSFVMLDILLQLQKSAPV-NFELIAVNLD-QKQPG---FPEHILPEYLEKLAVPF 132

Query: 85  SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++                         R   +   A+TI AT I   H  DD +ET+++
Sbjct: 133 YIIDKDTYSVVKSKIPEGKTTCGLCSRLRRGTLYSFAETIGATKIALGHHRDDMVETLFL 192

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195
                   K    S        D    + RP   C+ +D+ +    R       P N   
Sbjct: 193 NMFYGSRLK----SMPPKLRSNDGRNVVIRPLAYCKEKDLIALAEHREFPII--PCNLCG 246

Query: 196 -DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
             +  +R  ++  ++D +          F+ ++    + +A 
Sbjct: 247 SQENLQRQSIKVMLQDWEKQHPGRVENIFRSMQNISPSQLAD 288


>gi|239813981|ref|YP_002942891.1| PP-loop domain protein [Variovorax paradoxus S110]
 gi|259550672|sp|C5CNK9|TTCA_VARPS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|239800558|gb|ACS17625.1| PP-loop domain protein [Variovorax paradoxus S110]
          Length = 309

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 13/177 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76
              ++V VSGG DS  +L  L  + + R+       A+++D   +    +EV  RY+S++
Sbjct: 49  GDKVMVCVSGGKDSYAMLDILLKLRA-RAPIHFDIVAVNLD-QKQPGFPEEVLPRYLSEL 106

Query: 77  CSRLRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                I     +S+V     + +T         R  ++   A  + AT +   H  DD L
Sbjct: 107 GVDFHIENQDTYSIVKRVIPEGKT-TCGLCSRLRRGILYRVADELGATKVALGHHRDDML 165

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           +T ++         G   S     +  D    + RP      +D+  +   R     
Sbjct: 166 QTFFLNMF----FAGKLKSMPPKLVSDDGKHIVIRPLAYVAEKDLVRWAQHREFPII 218


>gi|88798315|ref|ZP_01113901.1| hypothetical protein MED297_13692 [Reinekea sp. MED297]
 gi|88779091|gb|EAR10280.1| hypothetical protein MED297_13692 [Reinekea sp. MED297]
          Length = 310

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 63/186 (33%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L S+         +  A+++D   +        ++  +  
Sbjct: 37  GDRIMVCLSGGKDSFTMLDILMSLQKSAPV-NFELIAVNLD-QKQPG---FPEHILPEYL 91

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + +   ++                         R + I   A  I A  +   H  DD
Sbjct: 92  KSVGVPFHILERDTYSIVQETVPEGKTTCGICSRLRRSTIYAFADQIGANKVALGHHRDD 151

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFLLQRNISWC 189
            +ET+++         G  L  M   +L D  +  + RP   CR  DI  F   +N    
Sbjct: 152 IIETLFLNMF-----YGGKLKAMPPKLLSDSKSNILIRPLAYCRESDIEEFARLKNYPII 206

Query: 190 EDPSNT 195
             P N 
Sbjct: 207 --PCNL 210


>gi|327393998|dbj|BAK11420.1| ATPase YdaO [Pantoea ananatis AJ13355]
          Length = 311

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 89/276 (32%), Gaps = 37/276 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD------- 59
           E++  F   +     I+V +SGG DS  +L  L S+            A+++D       
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRSLQKSAPVS-FSLVAVNLDQKQPGFP 85

Query: 60  -HCLRETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALIS 111
            H L E                 + + +V        K+  P+     +     R  ++ 
Sbjct: 86  GHILPE-----------YLDAQGVEYKIVEEDTYSIVKDKIPEGKTTCSLCSRLRRGILY 134

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A  +  T I   H  DD L+T+++        KGM    M D    D    + RP   
Sbjct: 135 RTATELGCTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAY 190

Query: 172 CRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
           CR +DI  F   R       P N        +R  V   +RD D          F  ++ 
Sbjct: 191 CREKDIIRFSEARQFPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQN 248

Query: 229 KVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            V + +A +              +    L  D   L
Sbjct: 249 VVPSHMADINLFDFIGIQHGDAVVDGGDLAFDRETL 284


>gi|308186953|ref|YP_003931084.1| UPF0021 protein [Pantoea vagans C9-1]
 gi|308057463|gb|ADO09635.1| UPF0021 protein [Pantoea vagans C9-1]
          Length = 311

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L S+            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRSLQKSAPV-NFSLIAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++         + + +V        K+  P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPQYLESQGVEYRIVEEDTYSIVKDKVPEGKTTCSLCSRLRRGILYRVATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I   H  DD L+T+++        KGM    M D    D    + RP   CR +DI 
Sbjct: 142 CTKIALGHHRDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKQIVIRPLAYCREKDII 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   R       P N        +R  V   +RD D          F  ++  V + +A
Sbjct: 198 RFSEARQFPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNVVPSHLA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            +              +    L  D   L
Sbjct: 256 DVSLFDFKGIKHGDAVVDGGDLAFDRQTL 284


>gi|85705857|ref|ZP_01036953.1| hypothetical protein ROS217_08670 [Roseovarius sp. 217]
 gi|85669445|gb|EAQ24310.1| hypothetical protein ROS217_08670 [Roseovarius sp. 217]
          Length = 289

 Score = 83.4 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 16/217 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                LV +SGG DS  LL  LH +   R    +   A ++D   +         + D  
Sbjct: 44  PGGKWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPDFL 99

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +R+++ H +       +            A     R   +   A+    T ++  H  DD
Sbjct: 100 NRMQVPHRIEYQDTYSIVMDKVPAGRTYCALCSRLRRGNLYRIAREEGCTAVVLGHHRDD 159

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189
            LET +M         G   +     +  + +L++ RP       D   F    N     
Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCERFSRAMNYPIIP 215

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
            D   + D  +R +V++ +   + +A   +   F+ L
Sbjct: 216 CDLCGSQDGLQRQQVKQILDGWEANAPGRRQVMFRAL 252


>gi|302877435|ref|YP_003845999.1| PP-loop domain-containing protein [Gallionella capsiferriformans
           ES-2]
 gi|302580224|gb|ADL54235.1| PP-loop domain protein [Gallionella capsiferriformans ES-2]
          Length = 280

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 91/241 (37%), Gaps = 21/241 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR--YVSDVCSR 79
           ++V +SGG DS  LL  L ++   R+    +  A+++D   +     ++   Y+  +   
Sbjct: 43  VMVCLSGGKDSYTLLDILLTL-RKRAPIDFRIVAMNLD-QKQPGFPADILPGYLKALGVE 100

Query: 80  LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             I     +S+V  K  + +T   +     R  +I + A  + A  I   H  DD +ET+
Sbjct: 101 YHIETQDTYSIVKEKIPEGKT-TCSLCSRLRRGIIYKVAGELGANKIALGHHRDDMIETL 159

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCEDPSN 194
           ++            L  M   ++ D    I  RP   C  +DI  +           P N
Sbjct: 160 FLNMFFAGK-----LKAMPPKLVTDKGDHIVIRPLAYCVEKDIARYARGMEFPII--PCN 212

Query: 195 T---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRSII 250
                +  +R  ++  + + +          F  ++ V  ++ +   +  +  + M   +
Sbjct: 213 LCGSQENLQRQNIKEMLTNWERQYPGRSQTIFTAMQNVAPSHLLDGTLFDFKGMQMGQDV 272

Query: 251 A 251
           A
Sbjct: 273 A 273


>gi|119896776|ref|YP_931989.1| C32 tRNA thiolase [Azoarcus sp. BH72]
 gi|205830554|sp|A1K2P7|TTCA_AZOSB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|119669189|emb|CAL93102.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 306

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 16/196 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79
           ++V VSGG DS  LL  L ++  +R+    +  A+++D   +    D+V   Y   +   
Sbjct: 44  VMVCVSGGKDSYTLLSCLLAL-RERAPVDFRIVAMNLD-QKQPGFPDDVLPAYFESIGVE 101

Query: 80  LRIA----HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            RI     +S+V  K  + +T   +     R  +I   AK I AT I   H  DD LET+
Sbjct: 102 YRIVTEDTYSIVKDKIPEGKT-TCSLCSRLRRGIIYRTAKEIGATRIALGHHRDDMLETL 160

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
           ++        K M        +  D    + RP   C   DI  F    +      P N 
Sbjct: 161 FLNMFFGGKIKAM----PPKLVSDDGQHVVIRPLAYCTENDIERFARGMDFPII--PCNL 214

Query: 196 DDRFERVRVRRFVRDI 211
               +    R+ ++ +
Sbjct: 215 CGS-QENAQRKQIKTM 229


>gi|325922029|ref|ZP_08183831.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Xanthomonas gardneri ATCC 19865]
 gi|325547489|gb|EGD18541.1| putative ATPase of the PP-loop superfamily implicated in cell cycle
           control [Xanthomonas gardneri ATCC 19865]
          Length = 304

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 20/242 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     I+V +SGG DS  LL  L  +        + F+ ++V+  L +   D   +V  
Sbjct: 48  IAAGDKIMVCLSGGKDSYTLLDMLLHLQRK---APVPFTLVAVN--LDQKQPDFPAHVLP 102

Query: 75  DVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L +   +V                 + +     R   +  +A+    T I   H 
Sbjct: 103 SYLRGLDVPFDIVEQDTYSVVSRVIPAGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHH 162

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD + T +M          M           D    + RP    R  DI ++   R   
Sbjct: 163 RDDIVATFFMNLFHHARLAAMA----PKLRSDDGQHVVIRPLAYVRETDIAAYAQARQFP 218

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
               P N     +    R+ V  +       +  + + +   + +     +         
Sbjct: 219 II--PCNLCGS-QENLQRQQVGRMLQQWDREQPGRVEQIARALGDVRPEQLADRTLFDFL 275

Query: 248 SI 249
           S+
Sbjct: 276 SL 277


>gi|241766471|ref|ZP_04764341.1| PP-loop domain protein [Acidovorax delafieldii 2AN]
 gi|241363323|gb|EER58853.1| PP-loop domain protein [Acidovorax delafieldii 2AN]
          Length = 318

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L  +   R+       A+++D   +        +V  D  
Sbjct: 58  GDKVMVCMSGGKDSYALLDILLKL-KTRAPIHFDLVAVNLD-QKQPG---FPEHVLPDYL 112

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           S   +   + +                  +     R  ++   A  + AT I   H  DD
Sbjct: 113 SSTGVPFHIENEDTYSIVKRLIPEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDD 172

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+ +        K    S     +  D    + RP      +D   +   RN     
Sbjct: 173 ILQTLLLNMFFGGKLK----SMPPKLVSDDGRHVVIRPLAFVPEKDTARWAQHRNFPII- 227

Query: 191 DPSNT 195
            P N 
Sbjct: 228 -PCNL 231


>gi|329298379|ref|ZP_08255715.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Plautia stali
           symbiont]
          Length = 311

 Score = 83.4 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 89/269 (33%), Gaps = 23/269 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++        + FS ++V+  L +  
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQS---APVNFSLVAVN--LDQKQ 81

Query: 67  KDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
                +V       L + + +V+                  +     R   +   A  + 
Sbjct: 82  LGFPAHVLPAYLDTLGVEYQIVNEDTYSIVKEKIPEGKTTCSLCSRLRRGTLYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I   H  DD L+T+++        KGM    M +    D    + RP   CR +DI 
Sbjct: 142 CTKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSN----DGKHIVIRPLAYCREKDIV 197

Query: 179 SFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
            F   R       P N        +R  V   +RD D          F  ++  V + +A
Sbjct: 198 RFAEARQYPII--PCNLCGSQPNLQRQVVADMLRDWDKRYPGRIETMFSAMQNIVPSHMA 255

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLL 264
            +              +    +  D   L
Sbjct: 256 DINLFDFKGIKHGDAVVDGGDIGFDRESL 284


>gi|325578378|ref|ZP_08148513.1| PP-loop family protein [Haemophilus parainfluenzae ATCC 33392]
 gi|325160114|gb|EGC72243.1| PP-loop family protein [Haemophilus parainfluenzae ATCC 33392]
          Length = 309

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 38  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 92

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 93  QSIGVDYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 152

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP   C+ +DI  + + +     
Sbjct: 153 MLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII 207

Query: 190 EDPSNT 195
             P N 
Sbjct: 208 --PCNL 211


>gi|126700013|ref|YP_001088910.1| hypothetical protein CD2398 [Clostridium difficile 630]
 gi|255101555|ref|ZP_05330532.1| hypothetical protein CdifQCD-6_12149 [Clostridium difficile
           QCD-63q42]
 gi|255656373|ref|ZP_05401782.1| hypothetical protein CdifQCD-2_11914 [Clostridium difficile
           QCD-23m63]
 gi|296450178|ref|ZP_06891939.1| PP-loop family protein [Clostridium difficile NAP08]
 gi|296878559|ref|ZP_06902564.1| PP-loop family protein [Clostridium difficile NAP07]
 gi|115251450|emb|CAJ69283.1| putative 2-thiocytidine tRNA biosynthesis protein TtcA [Clostridium
           difficile]
 gi|296260941|gb|EFH07775.1| PP-loop family protein [Clostridium difficile NAP08]
 gi|296430366|gb|EFH16208.1| PP-loop family protein [Clostridium difficile NAP07]
          Length = 286

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 25/194 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHC 61
             ++++R + + +     I VA+SGG DS+ +      +   +  G++ F    I++D  
Sbjct: 39  KFMKAIRDY-KLVEEGDKIAVAISGGKDSILMAKMFQEL---KKHGQVNFDVEFIAMDPG 94

Query: 62  LRETAKDEVRYVSDV----CSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISE 112
                      +  +    C  L I        +    +   +          R   +  
Sbjct: 95  YHAN-------IRQLLIDNCEYLNIPIHLFDSRIFEIADEIAKDYPCYMCARMRRGALYS 147

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+ +    +   H +DD +ET  +            L  +  T      + I RP    
Sbjct: 148 KAEELGCNKLALGHHYDDVIETTMLNLL-CAGNFKTMLPKLNSTNF--EGIKIIRPLYYI 204

Query: 173 RREDIRSFLLQRNI 186
           R E I  F+    I
Sbjct: 205 REEHIIRFIQNSGI 218


>gi|260222290|emb|CBA31706.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 318

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 76/207 (36%), Gaps = 26/207 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS G+L  L  +   R+    +  A+++D   +    D    + +  +
Sbjct: 29  GDRVMVCMSGGKDSYGMLDILLKMQ-QRAPINFEIVAVNLD-QKQPGFPD--HILPEYLA 84

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L +   +       +  +N      + +     R  ++   A+ +    +   H  DD 
Sbjct: 85  KLGVEFHIETQDTYSIVKRNIPEGKTMCSLCSRLRRGILYSVARKLKCNKLALGHHRDDM 144

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           L+T ++         G  L GM   +  D   + + RP      +D+  +   R      
Sbjct: 145 LQTFFLNMF-----FGGKLKGMPPKLTSDNGEFVVIRPLAYVAEKDLIRWAAHREFPIIP 199

Query: 191 DP-----SNTDDRFERVRVRRFVRDID 212
                  +N      RV++   +RD +
Sbjct: 200 CSLCGSQTNLQ----RVQIGNMLRDWE 222


>gi|254463423|ref|ZP_05076839.1| hypothetical protein RB2083_4014 [Rhodobacterales bacterium
           HTCC2083]
 gi|206680012|gb|EDZ44499.1| hypothetical protein RB2083_4014 [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 304

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 16/220 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                LV +SGG DS  LL  L  +   R    ++  A ++D   +         + +  
Sbjct: 67  PGGKWLVCMSGGKDSYTLLAILIEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 122

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            ++ I H +       +            A     R   +   A+    T ++  H  DD
Sbjct: 123 EKMGIPHRIEYQDTYSIVMDKIPAGRTFCALCSRLRRGNLYRVAREEGCTAVVLGHHRDD 182

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC- 189
            LET +M         G   +     +  + +L++ RP       D   F    N     
Sbjct: 183 ILETFFMNLFHG----GRLATMPPKLLNEEGDLFVYRPLAHVAEVDCEKFASAMNYPIIP 238

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
            D   + D  +R +V++ +   + +    +   F+ L   
Sbjct: 239 CDLCGSQDGLQRQQVKQILDGWEANNPGRRQVMFRALTNA 278


>gi|325675051|ref|ZP_08154738.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Rhodococcus equi ATCC 33707]
 gi|325554637|gb|EGD24312.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Rhodococcus equi ATCC 33707]
          Length = 244

 Score = 83.0 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT DDQ ETV +   R     G  + GM        +    RP LR RR+  R   
Sbjct: 41  VLLGHTLDDQAETVLLGLARGSG--GRSIRGMAGY-----DAPWGRPLLRVRRDVTRRAC 93

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217
            +  +   EDP N D  F RVR+R  V  +   AL 
Sbjct: 94  AELGLVAHEDPHNADPAFTRVRLRTEVLPLLEDALG 129


>gi|294675904|ref|YP_003576519.1| PP-loop family ATPase [Rhodobacter capsulatus SB 1003]
 gi|294474724|gb|ADE84112.1| ATPase, PP-loop family [Rhodobacter capsulatus SB 1003]
          Length = 294

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 88/279 (31%), Gaps = 41/279 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                LV +SGG DS  LL AL  +   R    +   A ++D   +         + D  
Sbjct: 45  PGDRWLVCLSGGKDSYTLLAALVEL-KWRGLLPVDLLACNLD---QGQPGFPATVLPDFL 100

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +R+ +AH +       V  +         +     R   +   A+    + ++  H  DD
Sbjct: 101 TRMGVAHRIEFQDTYSVVKEKIPEGQTTCSLCSRLRRGNLYRIAREEGCSTVVLGHHRDD 160

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET +M         G   +     +  + +L++ RP       D   F          
Sbjct: 161 ILETFFMNLFHG----GRLATMPPRLLNEEGDLFVCRPLAFVAEADCEKFARGMGYPII- 215

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV-KVNNAVAMLIPKYLTVHMRSI 249
            P N                     L    +  Q ++V ++ +A     P    V  RS+
Sbjct: 216 -PCN---------------------LCGSQEGLQRVQVKQILDAWEARSPGRRQVMFRSL 253

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGG--QISLPGYRS 286
           + +    L       F  L  + A   G    ++P  R 
Sbjct: 254 MNVRPSHLCDPGLFDFAALMRAEAPIAGDFNENMPNLRQ 292


>gi|160896694|ref|YP_001562276.1| C32 tRNA thiolase [Delftia acidovorans SPH-1]
 gi|205830578|sp|A9BXV6|TTCA_DELAS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|160362278|gb|ABX33891.1| PP-loop domain protein [Delftia acidovorans SPH-1]
          Length = 313

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L  +   R+  K +  A+++D   +    D   +V  +  
Sbjct: 52  GDKIMVCMSGGKDSYTMLDVLRKLQK-RAPVKFELVAVNLD-QKQPGFPD---HVLPEYF 106

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +       V  +               R A++ + A  +  T +   H  DD
Sbjct: 107 KSIGVDYHIETQDTYSVVKRVVPEGKTTCGLCSRLRRAILYKVADELGCTKVALGHHRDD 166

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ++T+ +        KGM        +  D    + RP      +D   +   +N     
Sbjct: 167 IVQTLMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTVRWAQYQNFPII- 221

Query: 191 DPSNT 195
            P N 
Sbjct: 222 -PCNL 225


>gi|301156276|emb|CBW15747.1| predicted C32 tRNA thiolase [Haemophilus parainfluenzae T3T1]
          Length = 309

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 38  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 92

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 93  QSIGVDYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 152

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP   C+ +DI  + + +     
Sbjct: 153 MLATLFLNIF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKAFPII 207

Query: 190 EDPSNT 195
             P N 
Sbjct: 208 --PCNL 211


>gi|205830656|sp|A5UBX9|TTCA_HAEIE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 310

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 39  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 154 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKKFPII- 208

Query: 191 DPSNT 195
            P N 
Sbjct: 209 -PCNL 212


>gi|148825910|ref|YP_001290663.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
 gi|148716070|gb|ABQ98280.1| threonyl-tRNA synthetase [Haemophilus influenzae PittEE]
          Length = 276

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 5   GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 59

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 60  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 120 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKKFPII- 174

Query: 191 DPSNT 195
            P N 
Sbjct: 175 -PCNL 178


>gi|145634319|ref|ZP_01790029.1| hypothetical protein CGSHiAA_05999 [Haemophilus influenzae PittAA]
 gi|145268299|gb|EDK08293.1| hypothetical protein CGSHiAA_05999 [Haemophilus influenzae PittAA]
          Length = 313

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKKFPII- 211

Query: 191 DPSNT 195
            P N 
Sbjct: 212 -PCNL 215


>gi|159042886|ref|YP_001531680.1| C32 tRNA thiolase [Dinoroseobacter shibae DFL 12]
 gi|205830580|sp|A8LMA2|TTCA_DINSH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|157910646|gb|ABV92079.1| PP-loop ATPase [Dinoroseobacter shibae DFL 12]
          Length = 287

 Score = 83.0 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 15/172 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
               LV +SGG DS  LL AL  +   R    ++  A ++D   +         + +   
Sbjct: 50  KPRWLVCLSGGKDSYTLLAALTELQ-WRGLLPVEILACNLD---QGQPGFPATVLPEFLE 105

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           R+ + H +       +            A     R   +   A+    + ++  H  DD 
Sbjct: 106 RMGVPHRIEYQDTYSIVMDKVPAGRTYCALCSRLRRGNLYRIAREEGCSAVLLGHHRDDI 165

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           LET +M         G   +     +  + +L++ RP       D   F   
Sbjct: 166 LETFFMNLFHG----GRLATMPPKLVNEEGDLFVLRPLAHVAEADCARFAKA 213


>gi|68250114|ref|YP_249226.1| C32 tRNA thiolase [Haemophilus influenzae 86-028NP]
 gi|81335462|sp|Q4QK81|TTCA_HAEI8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|68058313|gb|AAX88566.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Haemophilus influenzae 86-028NP]
          Length = 310

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++  +    K    A+++D   +        +V  +  
Sbjct: 39  GDKVMVCLSGGKDSYTLLDILLNLQQNAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 154 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 208

Query: 191 DPSNT 195
            P N 
Sbjct: 209 -PCNL 212


>gi|152996252|ref|YP_001341087.1| PP-loop domain-containing protein [Marinomonas sp. MWYL1]
 gi|205830602|sp|A6VXH3|TTCA_MARMS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|150837176|gb|ABR71152.1| PP-loop domain protein [Marinomonas sp. MWYL1]
          Length = 279

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 87/258 (33%), Gaps = 30/258 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L ++ +      I FS ++V+  L +       ++     
Sbjct: 38  GDKVMVCLSGGKDSYTMLEILRNLQAS---APINFSIVAVN--LDQKQPGFPEHILPAYL 92

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +   ++                         R   +   A+ I AT I   H  DD
Sbjct: 93  EELGVDFHILERDTYSIVKEIVPEGKTTCGLCSRLRRGSLYGFAEEIGATKIALGHHRDD 152

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  L  M   +L D    I  RP   C+ EDI +F + +     
Sbjct: 153 ILETLFLNMF-----FGGKLKSMPPKLLSDDGKHIVIRPLAYCKEEDIEAFSVMKEYPII 207

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+D+        ++K++        ++   I   +  H+   
Sbjct: 208 --PCNLCGS-QENLQRQVVKDM--------LQKWEKEFPGRTESMFSAIQNVVPSHLADT 256

Query: 250 IAISQDILNIDSTLLFYL 267
                  L         L
Sbjct: 257 KLFDFKGLKQSPAAFDRL 274


>gi|330504156|ref|YP_004381025.1| C32 tRNA thiolase [Pseudomonas mendocina NK-01]
 gi|328918442|gb|AEB59273.1| C32 tRNA thiolase [Pseudomonas mendocina NK-01]
          Length = 274

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/211 (21%), Positives = 76/211 (36%), Gaps = 34/211 (16%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS  +L  L  +        IKF  ++V+          H L      
Sbjct: 32  GDKVMVCLSGGKDSYTMLDVLLYLQK---VAPIKFEIVAVNMDQKQPGFPEHVL------ 82

Query: 69  EVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +  +  I     +SVV  K  + +T   +     R   +  +A  I AT +  
Sbjct: 83  -PAYLESIGVQYHIIEKDTYSVVKEKIPEGKT-TCSLCSRLRRGTLYTYADEIGATKMAL 140

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQ 183
            H  DD LET ++         G  L  M   +L D     + RP   C   DI ++   
Sbjct: 141 GHHRDDILETFFLNMF-----YGGTLKAMPPKLLSDDGRNVVIRPLAYCAEADIEAYSQL 195

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
           +       P N     +    R+ V+++   
Sbjct: 196 KEFPII--PCNLCGS-QENLQRQVVKEMLQE 223


>gi|303244453|ref|ZP_07330788.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
 gi|302485151|gb|EFL48080.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
          Length = 306

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 20/182 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I + +SGG DS+ +   L+     +        A+ VD  +    KD V      C    
Sbjct: 50  IGMGLSGGKDSLVMAYILNEFY--KPIPNSNIIALIVDEGIEGFRKDGVNMAIKFCEEYD 107

Query: 82  IAHSVVSWK---------------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           IA+ + ++K               +        +     R  ++++ A       +   H
Sbjct: 108 IAYKIATFKEYIGYDLDELVKIAKDKNLTMNPCSFCGVIRRKILNKMALNEKCNYLAIGH 167

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  + + M       +K   L    +  ++   +   +P       ++  F     I
Sbjct: 168 NLDDMAQAIMMNYIEGDVKKLAILGHDANNPMF---VKRIKPLKYIPENEVLLFADLLEI 224

Query: 187 SW 188
            +
Sbjct: 225 KY 226


>gi|307069632|ref|YP_003878109.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Zinderia
           insecticola CARI]
 gi|306482892|gb|ADM89763.1| putative tRNA(Ile)-lysidine synthetase [Candidatus Zinderia
           insecticola CARI]
          Length = 443

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 46/229 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  LL  ++ +  ++   K+    I ++                      
Sbjct: 24  VAIAYSGGIDSSVLLNIIYKLNLNK---KLNIFIIYIN--------------------HN 60

Query: 82  IAHSVVSWKNSKPQTG--------------------LMAAAREARYALISEHAKTINATL 121
           I  +    K    +                      L    R+ RY  I  + K  N   
Sbjct: 61  INKNFFFLKKKLKKNLKKYKYLRIKIIKIKKNKDNNLEKKLRDQRYLKILNYCKKNNIKY 120

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++ AH   D +E +++   R               I    N+ I RPFL   +  I+ + 
Sbjct: 121 VLLAHHKLDLIENIFLNILRGCNLF---NIINIKNINILNNIKIIRPFLNLSKIYIKKYS 177

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
               I +  D +N +  ++R  +R  +    L+     +KK  +L+  +
Sbjct: 178 KIYKIKFINDKTNYNIYYKRNILRNKIIPFILNYFPNFIKKLNNLKKNI 226


>gi|313679560|ref|YP_004057299.1| pp-loop domain protein [Oceanithermus profundus DSM 14977]
 gi|313152275|gb|ADR36126.1| PP-loop domain protein [Oceanithermus profundus DSM 14977]
          Length = 329

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ILVAVSGG DS+ L   L  +    +   I+         + + ++  +   
Sbjct: 42  RMIRPGDRILVAVSGGKDSLVLWDTLARLGHAATGFHIQL-------GIGDYSQRALEAT 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREA--------RYALISEHAKTINATLI 122
               +   +   VV  + S   T      A  R A        RY L++  A+     ++
Sbjct: 95  RAFAAARGLELIVVDVRQSFGLTIPQLAQATGRAACSGCGLSKRY-LMNRVAEEEGFNVV 153

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFL 181
            T H  DD+  T+          +   L      +     L    +P       ++ ++ 
Sbjct: 154 ATGHNLDDEAATLLGNV---SHWQLDALVRQGPMLEGREGLARRIKPLYTFTEREVAAYA 210

Query: 182 LQRNISW 188
               I++
Sbjct: 211 FLAGIAY 217


>gi|150398925|ref|YP_001322692.1| PP-loop domain-containing protein [Methanococcus vannielii SB]
 gi|150399417|ref|YP_001323184.1| PP-loop domain-containing protein [Methanococcus vannielii SB]
 gi|150011628|gb|ABR54080.1| PP-loop domain protein [Methanococcus vannielii SB]
 gi|150012120|gb|ABR54572.1| PP-loop domain protein [Methanococcus vannielii SB]
          Length = 308

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 57/183 (31%), Gaps = 20/183 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I + +SGG DS+ +   L      +     K   + VD  +     D +    D C+  
Sbjct: 48  KIGIGLSGGKDSLVMAHLLSEFF--KPIPNAKLIGLMVDEGIDGFRTDGINNAIDFCNEY 105

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
            I + VV +K+                       +     R  ++++ A       +   
Sbjct: 106 DIEYKVVHFKDYIETDLDTIVKLAKEKNLTMNPCSFCGVIRRKILNKIAIIEKCDYLAIG 165

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD  + V M       +K   L        +   +   +P  +   +++  F     
Sbjct: 166 HNLDDISQAVMMNYIEGNIKKLAVLGKDSKNSKF---VKRIKPLEKIPEDEVLLFADFLK 222

Query: 186 ISW 188
           + +
Sbjct: 223 LKY 225


>gi|315425194|dbj|BAJ46864.1| hypothetical conserved protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 233

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 24/185 (12%)

Query: 45  DRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104
           ++ F +    A++VD  +     + + YV +V   L +     S++ +  ++     A +
Sbjct: 5   EKRFPRAGLVAVTVDEGIEGYRDEALEYVEEVTRMLEVPLYKTSFEEAFGKSLSEIVASK 64

Query: 105 ---------------ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149
                           R   I+  AK   AT+I TAHT DD ++T ++++ R     G  
Sbjct: 65  QFRSSGLAACSVCGPLRRRAINIAAKRAGATVIATAHTLDDVVQTYFLKTFRGEL--GTS 122

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW--CEDPSNTDDRFERVRVRRF 207
             G+     +   +    PF      ++  +    NI +     P N      R  +RRF
Sbjct: 123 EIGLRLEGPF---IPRVAPFRLTPEREVVFYAYLHNIPFQSQVCP-NAATS-MRNMIRRF 177

Query: 208 VRDID 212
           + + D
Sbjct: 178 LAEFD 182


>gi|145631383|ref|ZP_01787154.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Haemophilus influenzae R3021]
 gi|144983042|gb|EDJ90546.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Haemophilus influenzae R3021]
          Length = 273

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 19/183 (10%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSR 79
            ++V +SGG DS  LL  L ++  +    K    A+++D   +        +V  +    
Sbjct: 4   KVMVCLSGGKDSYTLLDILLNLQQNAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYLES 58

Query: 80  LRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           + + + +V        K   P+     +     R  ++   A  + AT I   H  DD L
Sbjct: 59  IGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDML 118

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
            T+++        K    S     I  D    + RP   C+ +DI  + + +       P
Sbjct: 119 ATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII--P 172

Query: 193 SNT 195
            N 
Sbjct: 173 CNL 175


>gi|319897022|ref|YP_004135217.1| hypothetical protein HIBPFp02 [Haemophilus influenzae F3031]
 gi|317432526|emb|CBY80886.1| conserved hypothetical protein [Haemophilus influenzae F3031]
          Length = 276

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 5   GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 59

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 60  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 120 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLTYCKEKDIEKYAIAKEFPII- 174

Query: 191 DPSNT 195
            P N 
Sbjct: 175 -PCNL 178


>gi|144897903|emb|CAM74767.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 259

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 13/223 (5%)

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHAL-----YLKMKKFQDLRVKVNNAVAM 236
            QR+  W +DP N   R  RV +R     +    L         +        +N  VA 
Sbjct: 2   RQRDQDWVDDPFNIGPRHARVPLRLLADTLAAEGLEPGRLAQTARTLAVAGDALNRMVAD 61

Query: 237 LIPKYLTVHMRSIIAISQDIL-NIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLK 295
            + +++ +H      +  D    +   +   LL       GG+   P     + ++  L+
Sbjct: 62  AVVEWVDIHPPGFAWVRSDAWGQLPEDVALRLLVRLLCCHGGEEFPPRLERSQSLLRRLR 121

Query: 296 SGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL---- 351
            G+ G ++  RV+       L+   A R    +   P    +WDGR++    + +     
Sbjct: 122 HGQGGTLAGCRVMAAADGRVLFCREAGRMAEPVSAEPGAEILWDGRFRAVVPAQAPPGLR 181

Query: 352 -IQIGPQSYRK--ADVPSGIPPIIAQRALSSMPSKEGGKPLLA 391
              +GPQ + K    V  G  P I     +++P       + A
Sbjct: 182 LGGLGPQGWGKVVKAVGRGRLPDIPAMVRATLPVLMDEDGVFA 224


>gi|188997411|ref|YP_001931662.1| PP-loop domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932478|gb|ACD67108.1| PP-loop domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 304

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 89/243 (36%), Gaps = 28/243 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F + +E      +     + ILVAVSGG DS+ L  AL  +               ++  
Sbjct: 31  FDNRVEKTIKEFKMFDKNSKILVAVSGGKDSLSLWNALAKL-------GYNVDGFYINLG 83

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS------------KPQTGLMAAAREARYAL 109
           + + ++           ++     +V  K+             +P   +       RY  
Sbjct: 84  IGDYSQKSKELALKFAEKIGKTLHIVELKDEIATIPEMKTYDNRPACSICGT--IKRY-F 140

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SR 167
           +++ AK +   +I T H  DD+   V   +  +++ + +        +L + N +I   +
Sbjct: 141 MNKKAKELGYDIIATGHNLDDEA-AVLFSNTLNWSVEYL---KRQYPVLKEENGFIRKVK 196

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P  +   ++   + +   I + E+          +  + F+  ++  +   K++ + +  
Sbjct: 197 PLCKISEKESAMYAILSGIEYIEEECPYSVGATSIDYKLFLSQLEEKSPGTKLRFYSEFL 256

Query: 228 VKV 230
            K+
Sbjct: 257 RKM 259


>gi|270262062|ref|ZP_06190334.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Serratia odorifera
           4Rx13]
 gi|270043938|gb|EFA17030.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Serratia odorifera
           4Rx13]
          Length = 312

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        ++     
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPV-NFSLVAVNLD-QKQPG---FPEHILPAYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V        K+  P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  ESLGVEYKIVEENTYSIVKDKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F + +      
Sbjct: 154 ILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFSVAKEFPII- 208

Query: 191 DPSNT 195
            P N 
Sbjct: 209 -PCNL 212


>gi|225175443|ref|ZP_03729438.1| PP-loop domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169195|gb|EEG77994.1| PP-loop domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 233

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 12/163 (7%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            VA+SGG DS+ +      +   R   +++   I++D       K     + D C  L+I
Sbjct: 2   AVAISGGKDSLLMAKLFQELQRQRQV-ELELEFIAMDPGYHPNIK---ELLIDNCKHLQI 57

Query: 83  AHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
              +     +K ++   G        + R   +   A+ +    +   H FDD +ET  +
Sbjct: 58  PLHIFEADIFKIAQKIAGDYPCYMCAKMRRGALYTKAQEMGCNKLALGHHFDDVIETTML 117

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
                 + K M L  +         + + RP    + +DI  F
Sbjct: 118 NLLCAGSFKNM-LPKLKAKNF--AGMELIRPLYLIKEKDISRF 157


>gi|289192452|ref|YP_003458393.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus sp.
           FS406-22]
 gi|288938902|gb|ADC69657.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus sp.
           FS406-22]
          Length = 300

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 17/182 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +     ILVAVSGG D       L  +               ++  ++  +++ ++ V
Sbjct: 43  KMIDKDEKILVAVSGGKDGHAAAWVLKKL-------GYNIELFHINLGIKGFSEESLKAV 95

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-------ARYALISEHAKTINATLIMTAH 126
           +++  +L +   VV+ K+   +T      ++        RY L++         +I+T H
Sbjct: 96  NELAEKLEVPLHVVNLKDITGKTMEDIRGKKCSICGITKRY-LMNRFGYENGFDVIVTGH 154

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD++ +  + +  ++  + +          +D  L   + F     E I  +    NI
Sbjct: 155 NLDDEV-SFILNNILNWNIRYLA-KHEPVLPAHDKFLKKVKIFFEIEEELILKYAEAENI 212

Query: 187 SW 188
            +
Sbjct: 213 PY 214


>gi|229915473|gb|ACQ90818.1| tRNA-Ile lysidine synthase [Oocystis solitaria]
          Length = 425

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 78/232 (33%), Gaps = 38/232 (16%)

Query: 14  RSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++L+ P   IL+  S G DS+ L+I    +   ++  +++ + +  +H  ++ + +   +
Sbjct: 22  KNLINPQQKILIGFSAGQDSICLVIFFILI---KNQWELQINILWCNHFWQKESMNFFLH 78

Query: 73  VSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           ++ +C   +I   + +               R  R  +     K      ++T HT  DQ
Sbjct: 79  IAKICFYFKIKMFTTLPIFIP----NTEVRGRNWRSKISLRLLKFFIFNCLVTGHTASDQ 134

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS------------ 179
           +ET      R    +G+        +                + ++              
Sbjct: 135 IETFLFNLSRGSGSQGLFALKWKKCLNVPKQKNFL-----FTKHNLIKLKKAKKIYKKHK 189

Query: 180 -----FLLQR-------NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
                +L ++        +      SN  + + + + ++ +  +      +K
Sbjct: 190 VKGKFYLNKKLKKEINEKLFVFIYSSNLQEIYLQNQNKKKIFHLLFKQFQIK 241



 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
           ++ RP L+  R DI+      ++    D +N    + R  +R+ +  
Sbjct: 254 FVIRPLLKITRFDIKKICNFFDLPVYPDQTNQKKEYSRNFLRKKILP 300


>gi|237808949|ref|YP_002893389.1| PP-loop domain-containing protein [Tolumonas auensis DSM 9187]
 gi|259550668|sp|C4L8F7|TTCA_TOLAT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|237501210|gb|ACQ93803.1| PP-loop domain protein [Tolumonas auensis DSM 9187]
          Length = 302

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 17/184 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++ +          A+++D   +     EV        
Sbjct: 36  GDRVMVCLSGGKDSFAMLDILRNLQASAPI-NFDIVAVNLD-QKQPGFPPEVLP--QYLD 91

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + +V                   +     R  ++   A  + AT I   H  DD 
Sbjct: 92  SIGVEYKIVEEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTASELGATKIALGHHRDDI 151

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET+ +         G   +     +  D    + RP   C  +D+  +   +       
Sbjct: 152 LETLMLNMF----YAGKLKAMPPKLVSDDGKHVVIRPLAYCHEKDLIRYAEWKEFPII-- 205

Query: 192 PSNT 195
           P N 
Sbjct: 206 PCNL 209


>gi|319405658|emb|CBI79281.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 278

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 77/223 (34%), Gaps = 24/223 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L  I         L      L+A+SGG DS      L  +L  +  G +    ++ +  
Sbjct: 34  LLRHIRQALDDFSMLSSGKKWLIALSGGKDS---YALLALLLDLKWRGLLSIDILACN-- 88

Query: 62  LRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEH 113
           L +      +++  D  +  +I + +       +            +     R   +   
Sbjct: 89  LDQGQPAFPKHILPDFLNYYQIPYRIEYQDTYSIVTDKLTQTQTYCSLCSRLRRGHLYRI 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRC 172
           A+    + ++  H  DD LET  M            L+ M   ++ D  +L++ RP +  
Sbjct: 149 AREEGCSALVLGHHRDDVLETFLMNLFHGGR-----LAAMPGKLINDEKDLFVLRPLIYA 203

Query: 173 RREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDID 212
             EDI  F           P N     D  +R  +++ + DI+
Sbjct: 204 AEEDIEKFSQAMQFPII--PCNFCGSQDGLQRNAMKKMLNDIE 244


>gi|229846776|ref|ZP_04466883.1| hypothetical protein CGSHi7P49H1_02093 [Haemophilus influenzae
           7P49H1]
 gi|229810265|gb|EEP45984.1| hypothetical protein CGSHi7P49H1_02093 [Haemophilus influenzae
           7P49H1]
          Length = 310

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 39  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 154 MLATLFLNMFYGGKIK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 208

Query: 191 DPSNT 195
            P N 
Sbjct: 209 -PCNL 212


>gi|16273282|ref|NP_439523.1| C32 tRNA thiolase [Haemophilus influenzae Rd KW20]
 gi|260580795|ref|ZP_05848621.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus
           influenzae RdAW]
 gi|2495599|sp|Q57184|TTCA_HAEIN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|1574205|gb|AAC23019.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092612|gb|EEW76549.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus
           influenzae RdAW]
          Length = 313

 Score = 82.6 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKIK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211

Query: 191 DPSNT 195
            P N 
Sbjct: 212 -PCNL 215


>gi|91793197|ref|YP_562848.1| PP-loop [Shewanella denitrificans OS217]
 gi|123166124|sp|Q12N51|TTCA_SHEDO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|91715199|gb|ABE55125.1| PP-loop [Shewanella denitrificans OS217]
          Length = 323

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 22/213 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++   R+    +  A+++D   +        ++       L +A+
Sbjct: 48  LSGGKDSYAMLDILLNLQK-RAPISFEIVAVNLD-QKQPG---FPEHILPAYLDNLGVAY 102

Query: 85  SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++                   +     R   +   A+ I AT I   H  DD +ET+++
Sbjct: 103 HILEKDTYSIVKEKIPEGKTTCSLCSRLRRGTLYGFAQRIGATKIALGHHRDDIIETLFL 162

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT-- 195
                    G   +     +  D    + RP   CR +DI  +   +       P N   
Sbjct: 163 NMF----FAGKMKAMPPKLLSDDGANMVIRPLAYCREKDIAEYAKFKEFPII--PCNLCG 216

Query: 196 -DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +  +R  V+  ++  D H        F  ++
Sbjct: 217 SQENLKRGAVKDMLKQWDKHHPGRIESIFTAMQ 249


>gi|303256269|ref|ZP_07342285.1| PP-loop family protein [Burkholderiales bacterium 1_1_47]
 gi|302860998|gb|EFL84073.1| PP-loop family protein [Burkholderiales bacterium 1_1_47]
          Length = 301

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 17/175 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V VSGG DS  LL AL  +   R+  + +  A  ++  L +   D  R ++ +  
Sbjct: 64  GDKVMVCVSGGKDSYALLDALVRLQ-GRAPIRFELLAFCLNQHLPDFPLD--RLIAHL-E 119

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           ++ + + +       +          L +     R  +I   A+    T I   H  DD 
Sbjct: 120 KIGVPYHIEDQDTFSIVKSKYSDNRNLCSLCSRLRRGIIYRVAREQKCTKIALGHHLDDV 179

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185
           + T+ +         G  L  M   +L D    I  RP +  R +D+  +   + 
Sbjct: 180 VSTLMLNMF-----YGGRLKSMPPKLLSDAKEHIVIRPLVYLREKDLARWCRIKG 229


>gi|165918877|ref|ZP_02218963.1| PP-loop family protein [Coxiella burnetii RSA 334]
 gi|165917425|gb|EDR36029.1| PP-loop family protein [Coxiella burnetii RSA 334]
          Length = 256

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 83/238 (34%), Gaps = 18/238 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  LL  L+S+  +    K    A  +D   +     +   +     
Sbjct: 27  GDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSALRGWLD 82

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +I + +++                  +     R  +I  +A+    + I   H  DD 
Sbjct: 83  DKKIPYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGHHRDDL 142

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T+ M    +   +    S     +  +    + RP   C+  DI  + +++       
Sbjct: 143 IQTLLMSVFYNGQIR----SMPPKLLSDNKRHLLIRPLAYCQERDIIKYAMEQQFPLI-- 196

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           P N     ++  +R+ V+ +         K   ++   ++N     +  +   + R +
Sbjct: 197 PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNFREL 253


>gi|330998964|ref|ZP_08322689.1| PP-loop family protein [Parasutterella excrementihominis YIT 11859]
 gi|329575706|gb|EGG57232.1| PP-loop family protein [Parasutterella excrementihominis YIT 11859]
          Length = 301

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 17/175 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V VSGG DS  LL AL  +   R+  + +  A  ++  L +   D  R ++ +  
Sbjct: 64  GDKVMVCVSGGKDSYALLDALVRLQ-GRAPIRFELLAFCLNQHLPDFPLD--RLIAHL-E 119

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           ++ + + +       +          L +     R  +I   A+    T I   H  DD 
Sbjct: 120 KIGVPYHIEDQDTFSIVKSKYSDNRNLCSLCSRLRRGIIYRVAREQKCTKIALGHHLDDV 179

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRN 185
           + T+ +         G  L  M   +L D    I  RP +  R +D+  +   + 
Sbjct: 180 VSTLMLNMF-----YGGRLKSMPPKLLSDAKEHIVIRPLVYLREKDLARWCRIKG 229


>gi|332704481|ref|ZP_08424569.1| PP-loop domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332554630|gb|EGJ51674.1| PP-loop domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 311

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 23/205 (11%)

Query: 2   FLSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           FL     +   ++          ILVA+SGG DS+ L+  L              + + V
Sbjct: 27  FLYFRRQIERAIKKHGMFGPQDKILVALSGGKDSLALMYELAD-------QGYDVTGLHV 79

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP---------QTGLMAAAREARYAL 109
              +  +++     V   C++      +                    + +   + +   
Sbjct: 80  YLGIGRSSEQARHLVESFCAKHGFKLMIADMPAEGLAIPEVKECISRPICSVCGKIKRHY 139

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRP 168
            +  A     T + T H  DD++  ++  + R        LS    T+  D       +P
Sbjct: 140 FNRIALEHGFTALATGHNLDDEVARLFANTLR---WDAAYLSDQGPTLSEDSGFARKVKP 196

Query: 169 FLRCRREDIRSFLLQRNISWCEDPS 193
             R    +  ++   R I +  DP 
Sbjct: 197 LYRLTEFETAAYSFLRGIDYGVDPC 221


>gi|254449152|ref|ZP_05062603.1| hypothetical protein GP5015_1695 [gamma proteobacterium HTCC5015]
 gi|198261266|gb|EDY85560.1| hypothetical protein GP5015_1695 [gamma proteobacterium HTCC5015]
          Length = 298

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 22/229 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L S+         +  A+++D   +        ++  D  
Sbjct: 34  GDRVMVCLSGGKDSYTMLEILRSLQQSAPVS-FELFAVNLD-QKQPG---FPEHILPDYL 88

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           + + + H ++                         R   +  +A+    T I   H  DD
Sbjct: 89  NSIDMPHHIIERDTYSVVKRVIPEGKTTCGLCSRLRRGTLYGYAEEHGFTKIALGHHRDD 148

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET+++         G   S     +  D    + RP   C+  DI  +   ++     
Sbjct: 149 MIETLFLNMF----YAGKMKSMPPKLLSDDGKNMVIRPLAYCKEADIADYAEAKDFPII- 203

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            P N      + +R  ++  +RD D          F  L+    + +A 
Sbjct: 204 -PCNLCGSQPKLQRQEIKAMLRDWDKQFPGRIETIFSALQSVAPSQLAD 251


>gi|254975987|ref|ZP_05272459.1| hypothetical protein CdifQC_11769 [Clostridium difficile QCD-66c26]
 gi|255093375|ref|ZP_05322853.1| hypothetical protein CdifC_12054 [Clostridium difficile CIP 107932]
 gi|255315120|ref|ZP_05356703.1| hypothetical protein CdifQCD-7_12247 [Clostridium difficile
           QCD-76w55]
 gi|255517790|ref|ZP_05385466.1| hypothetical protein CdifQCD-_11811 [Clostridium difficile
           QCD-97b34]
 gi|255650905|ref|ZP_05397807.1| hypothetical protein CdifQCD_12011 [Clostridium difficile
           QCD-37x79]
 gi|260683976|ref|YP_003215261.1| hypothetical protein CD196_2241 [Clostridium difficile CD196]
 gi|260687636|ref|YP_003218770.1| hypothetical protein CDR20291_2288 [Clostridium difficile R20291]
 gi|306520791|ref|ZP_07407138.1| hypothetical protein CdifQ_13896 [Clostridium difficile QCD-32g58]
 gi|260210139|emb|CBA64296.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213653|emb|CBE05492.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 286

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 25/194 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHC 61
             ++S+R + + +     I VA+SGG DS+ +      +   +  G++ F    I++D  
Sbjct: 39  KFMKSIRDY-KLVEEGDKIAVAISGGKDSILMAKMFQEL---KKHGQVNFDVEFIAMDPG 94

Query: 62  LRETAKDEVRYVSDV----CSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISE 112
                      +  +    C  L I        +    +   +          R   +  
Sbjct: 95  YHAN-------IRQLLIDNCEYLNIPIHLFDSRIFEIADEIAKDYPCYMCARMRRGALYS 147

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+ +    +   H +DD +ET  +            L  +  T      + I RP    
Sbjct: 148 KAEELGCNKLALGHHYDDVIETTMLNLL-CAGNFKTMLPKLNSTNF--EGIKIIRPLYYI 204

Query: 173 RREDIRSFLLQRNI 186
           R E I  F+    I
Sbjct: 205 REEHIIRFIQNSGI 218


>gi|226941600|ref|YP_002796674.1| PP-loop superfamily ATPase MesJ [Laribacter hongkongensis HLHK9]
 gi|226716527|gb|ACO75665.1| PP-loop superfamily ATPase MesJ [Laribacter hongkongensis HLHK9]
          Length = 319

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 19/186 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ++V +SGG DS  LL  L  +            A+++D   +    ++V       
Sbjct: 43  AGDRVMVCLSGGKDSYALLDILLGLQKSAPI-DFSIVAVNLD-QKQPGFPEDVLPA--YL 98

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V                   +     R  ++   A  + AT I   H  DD
Sbjct: 99  ESLGVEYHIVEEDTYSIVKRLVPEGKTTCSLCSRLRRGVLYRVAGELGATKIALGHHRDD 158

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            L+T+++         G  L  M   +L D     + RP   CR +DI  +   R     
Sbjct: 159 ILQTLFLNMF-----YGGKLKAMPPKLLSDNGKHVVIRPLAYCREKDIERYAGLREFPII 213

Query: 190 EDPSNT 195
             P N 
Sbjct: 214 --PCNL 217


>gi|126460621|ref|YP_001056899.1| PP-loop domain-containing protein [Pyrobaculum calidifontis JCM
           11548]
 gi|126250342|gb|ABO09433.1| PP-loop domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 290

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 17/194 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++R + R +     I VAVSGG DS   L  L   + +      +  A+ ++      +
Sbjct: 25  ETIRRY-RLVEMGDVIYVAVSGGKDSCAALSLLREYVEEYRV-DAEVKALHINLGF-GYS 81

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN--------SKPQTGLMAAAREARYALISEHAKTIN 118
                 V      L +   V   K+              + +     +  ++++  + + 
Sbjct: 82  PKLEEIVKRQAEALGVELHVAYAKDYLDILAASKASGRPICSVCGAVKRYIMNKVPRELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRRED 176
           AT + T H   D          ++ A +    +      +    L +   RP +  R E+
Sbjct: 142 ATKVATGHHMYD----FLAYYFKNLAGQNHQWNFKILPKVEGRGLLLTKIRPLIFARPEE 197

Query: 177 IRSFLLQRNISWCE 190
             ++   + +   E
Sbjct: 198 NEAYCKSKGLPVNE 211


>gi|301170124|emb|CBW29728.1| predicted C32 tRNA thiolase [Haemophilus influenzae 10810]
          Length = 313

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211

Query: 191 DPSNT 195
            P N 
Sbjct: 212 -PCNL 215


>gi|260582701|ref|ZP_05850489.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus
           influenzae NT127]
 gi|260094267|gb|EEW78167.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus
           influenzae NT127]
          Length = 313

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211

Query: 191 DPSNT 195
            P N 
Sbjct: 212 -PCNL 215


>gi|229844169|ref|ZP_04464310.1| hypothetical protein CGSHi6P18H1_07036 [Haemophilus influenzae
           6P18H1]
 gi|229813163|gb|EEP48851.1| hypothetical protein CGSHi6P18H1_07036 [Haemophilus influenzae
           6P18H1]
          Length = 313

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KYDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211

Query: 191 DPSNT 195
            P N 
Sbjct: 212 -PCNL 215


>gi|145636081|ref|ZP_01791751.1| DNA topoisomerase I [Haemophilus influenzae PittHH]
 gi|145270603|gb|EDK10536.1| DNA topoisomerase I [Haemophilus influenzae PittHH]
          Length = 313

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211

Query: 191 DPSNT 195
            P N 
Sbjct: 212 -PCNL 215


>gi|145632883|ref|ZP_01788616.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Haemophilus influenzae 3655]
 gi|144986539|gb|EDJ93105.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Haemophilus influenzae 3655]
          Length = 276

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 5   GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 59

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 60  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 120 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 174

Query: 191 DPSNT 195
            P N 
Sbjct: 175 -PCNL 178


>gi|145639032|ref|ZP_01794640.1| hypothetical protein CGSHiII_02560 [Haemophilus influenzae PittII]
 gi|145272004|gb|EDK11913.1| hypothetical protein CGSHiII_02560 [Haemophilus influenzae PittII]
 gi|309750991|gb|ADO80975.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Haemophilus
           influenzae R2866]
          Length = 313

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211

Query: 191 DPSNT 195
            P N 
Sbjct: 212 -PCNL 215


>gi|309973056|gb|ADO96257.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Haemophilus
           influenzae R2846]
          Length = 313

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKEFPII- 211

Query: 191 DPSNT 195
            P N 
Sbjct: 212 -PCNL 215


>gi|312876099|ref|ZP_07736087.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797085|gb|EFR13426.1| tRNA(Ile)-lysidine synthetase [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 310

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 68/171 (39%), Gaps = 11/171 (6%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----- 212
           +  +   I+RP +   RE+I  F    NI +  D +N   +++R  VR  +  +      
Sbjct: 7   VPPVRDIIARPLINISREEIEEFARVNNIPFVVDKTNFSLKYKRNIVRNEILSLIKEKFG 66

Query: 213 ---LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
              L+ ++  ++  ++   ++         + +       +   +   N+   L   +++
Sbjct: 67  ESVLNTIFRTVEIIREESDQIEELAQKSFEECVQKEDIYYVLNIEKTKNLPVFLQRRIIK 126

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITR 320
           +        IS    + +E +   L SGK+   +   +V++R+ + L   R
Sbjct: 127 MILKYFNAPISYDILKEIEEL-ASLSSGKKKVYN--ELVVERQNDELVFYR 174


>gi|289547809|ref|YP_003472797.1| PP-loop domain protein [Thermocrinis albus DSM 14484]
 gi|289181426|gb|ADC88670.1| PP-loop domain protein [Thermocrinis albus DSM 14484]
          Length = 311

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 87/248 (35%), Gaps = 35/248 (14%)

Query: 7   ESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E V+  ++    +     +LVAVSGG DS+ L   LH +         +   + +D  + 
Sbjct: 33  ERVQRTIKQFGMMEKRDRVLVAVSGGKDSLSLWQVLHRL-------GYEADGLYIDLGIG 85

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK------------NSKPQTGLMAAAREARYALIS 111
           + +            R+     +V               +S+P      +    RY  ++
Sbjct: 86  DYSAKSKELCKKFSERIGRKLHIVDLSQELSTIPQIKQLDSRPACSFCGS--IKRY-YMN 142

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----YDLNLWISR 167
            +AK +  T++ T H  DD  ET  +            L  +          D  +   +
Sbjct: 143 LYAKKLGYTVVATGHNLDD--ETAVL----LSNVLSWNLQYLERQTPLLEEKDGFVRKVK 196

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P       +   + +  NI + E+     +    +  ++ +  I+  +   K++ + +  
Sbjct: 197 PLCLLTERETALYAVVTNIDYIEEECPFAENATSIDYKKIMAQIEEKSPGTKLRFYLEFL 256

Query: 228 VKVNNAVA 235
            KV  A++
Sbjct: 257 RKVRPALS 264


>gi|326437533|gb|EGD83103.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Salpingoeca sp. ATCC
            50818]
          Length = 1135

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 19   PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK--FSAISVD-----HCLRETAKDEVR 71
               +LV VSGG DS+ LL  +           ++    A +VD     +  R        
Sbjct: 883  GDRVLVCVSGGKDSLTLLHTMKQAQYVFRAQGVRFELGAATVDPGTEAYNPRP------- 935

Query: 72   YVSDVCSRLRIA------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + +    L +         + +  N      + +     +   +   A+     ++M  
Sbjct: 936  -LVEYMKALGVPYFYESQCIIDAASNVDNLASICSFCSRMKRGRLYACARREGYNVLMFG 994

Query: 126  HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
               DD  E+  M    +   +    +      + + +L ++RPF+  R +DIR+F    +
Sbjct: 995  QHLDDLAESFMMSLFHNGFLR----TMKAHYTVQEGDLRMARPFVFVREKDIRAFAEDAD 1050

Query: 186  IS 187
            ++
Sbjct: 1051 VA 1052


>gi|319784053|ref|YP_004143529.1| PP-loop domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169941|gb|ADV13479.1| PP-loop domain protein [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 295

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 23/232 (9%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  S+V P    LVA+SGG DS GLL  L  +   R    +   A ++D   +  
Sbjct: 46  QAIEDF--SMVKPGQRWLVALSGGKDSYGLLAVLLDL-KWRGLLPVDLLACNLDQG-QPN 101

Query: 66  AKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
                +++  D      IAH +       V        +   +     R   +   A+  
Sbjct: 102 ---FPKHILPDYLDSHGIAHRIEYQDTYSVVTDKLPAGSTYCSLCSRLRRGHLYRIAREE 158

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRRED 176
             + ++  H  +D LET +M            L+ M   +L D   + + RP   C   D
Sbjct: 159 GCSALVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDVMVLRPLSYCAEVD 213

Query: 177 IRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +  F           D   + +  +R  ++  + D++      K    + L 
Sbjct: 214 LEKFAAAMRFPIIPCDLCGSQEGLQRNAMKAMLEDLEKRMPGRKDTMLRALS 265


>gi|146307984|ref|YP_001188449.1| PP-loop domain-containing protein [Pseudomonas mendocina ymp]
 gi|205830613|sp|A4XWK1|TTCA_PSEMY RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|145576185|gb|ABP85717.1| PP-loop domain protein [Pseudomonas mendocina ymp]
          Length = 274

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 70/206 (33%), Gaps = 24/206 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVS-DV 76
              ++V +SGG DS  +L  L  +        IKF  ++V+    +        +V    
Sbjct: 32  GDKVMVCLSGGKDSYTMLDVLLYLQK---VAPIKFEIVAVNMDQKQPG---FPEHVLPAY 85

Query: 77  CSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              + +A+ ++                   +     R   +  +A  I AT +   H  D
Sbjct: 86  LESIGVAYHIIEKDTYSVVKEKIPEGKTTCSLCSRLRRGTLYTYADEIGATKMALGHHRD 145

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D LET ++         G  L  M   +L D     + RP   C   DI ++   +    
Sbjct: 146 DILETFFLNMF-----YGGTLKAMPPKLLSDDGRNVVIRPLAYCAEADIEAYSQLKEFPI 200

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLH 214
              P N     +    R+ V+++   
Sbjct: 201 I--PCNLCGS-QENLQRQVVKEMLQE 223


>gi|307302658|ref|ZP_07582414.1| PP-loop domain protein [Sinorhizobium meliloti BL225C]
 gi|307318505|ref|ZP_07597939.1| PP-loop domain protein [Sinorhizobium meliloti AK83]
 gi|205830653|sp|Q92PH1|TTCA_RHIME RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|306895845|gb|EFN26597.1| PP-loop domain protein [Sinorhizobium meliloti AK83]
 gi|306903022|gb|EFN33613.1| PP-loop domain protein [Sinorhizobium meliloti BL225C]
          Length = 294

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 78/239 (32%), Gaps = 29/239 (12%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59
             +  VR  +     L      LV VSGG DS  LL  L  +   R    ++  A ++D 
Sbjct: 44  RLLRQVRQALDDFGMLKGSRRWLVGVSGGKDSYSLLALLMDLQ-WRGLLPVELVACNLDQ 102

Query: 60  -------HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYA 108
                  H L         Y+  +  + RI +     +V  K     T   +     R  
Sbjct: 103 GQPNFPKHVL-------PDYLRSIGVKHRIEYRDTYSIVKEKVPAGAT-YCSLCSRLRRG 154

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +    +      ++  H  +D LET +M         G   S     +  + +L + RP
Sbjct: 155 NLYRIGREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLTVLRP 210

Query: 169 FLRCRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                 +D+  F           D   + D  ER  ++  + DI+      K    + L
Sbjct: 211 LAYAAEDDLAKFAAAMEFPIIPCDLCGSQDGLERNAMKAMLADIERRMPGRKDTMLRAL 269


>gi|315634290|ref|ZP_07889577.1| PP-loop family protein [Aggregatibacter segnis ATCC 33393]
 gi|315476880|gb|EFU67625.1| PP-loop family protein [Aggregatibacter segnis ATCC 33393]
          Length = 310

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 70/184 (38%), Gaps = 17/184 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76
              ++V +SGG DS  LL  L ++  +         A+++D   +    + +   Y+  +
Sbjct: 39  GDKVMVCLSGGKDSYTLLDILLNLQQNAPV-NFDIVAVNLD-QKQPGFPEHILPEYLQSI 96

Query: 77  CSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
               +I       +V  K  + +T   +     R  ++   A  + AT I   H  DD L
Sbjct: 97  GVNYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIALGHHRDDML 155

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWCED 191
            T+++         G  L  M   ++ D    I  RP   C+ +DI  + + +       
Sbjct: 156 ATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII-- 208

Query: 192 PSNT 195
           P N 
Sbjct: 209 PCNL 212


>gi|110633624|ref|YP_673832.1| PP-loop [Mesorhizobium sp. BNC1]
 gi|122966063|sp|Q11IV8|TTCA_MESSB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|110284608|gb|ABG62667.1| PP-loop [Chelativorans sp. BNC1]
          Length = 284

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 82/229 (35%), Gaps = 23/229 (10%)

Query: 4   SPIESVRFFVRS--LVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR       +V P    LVA+SGG DS GLL  L  +   R    ++  A ++D 
Sbjct: 37  RLLRQVRQAFEDFTMVKPGDRWLVALSGGKDSYGLLAVLLDL-KWRGLLPVELLACNLD- 94

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       +++  D  +RL + H +       V  +         +     R   +  
Sbjct: 95  QGQPN---FPKHILPDYLTRLGVPHRIEYQDTYSVVTEKIPENRTYCSLCSRLRRGHLYR 151

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLR 171
            A+    + ++  H  +D LET +M            L+ M   +L D   + + RP   
Sbjct: 152 IAREEGCSSLVLGHHREDILETFFMNFFHGGR-----LAAMPPKLLNDEGDVLVLRPLAY 206

Query: 172 CRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           C   D+  F           D   + D  +R  ++  + DI+      K
Sbjct: 207 CAETDLVKFAEGMKFPIIPCDLCGSQDGLQRNAMKAMLEDIERRMPGRK 255


>gi|325971461|ref|YP_004247652.1| PP-loop domain protein [Spirochaeta sp. Buddy]
 gi|324026699|gb|ADY13458.1| PP-loop domain protein [Spirochaeta sp. Buddy]
          Length = 249

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 38/208 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--------- 72
           +L++ SGG DS+ L +AL S+  +         A+ ++          + +         
Sbjct: 41  VLLSASGGKDSLALALAL-SIRRNWLPITYNLKALMIN---------WIEHPIPDEFREK 90

Query: 73  VSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           ++   + L    ++V         K +      +R  R  L +   +  +  L+   H  
Sbjct: 91  LTTYFTDLGYDFTIVDEHQYPESFKGEFNCYLCSRNRRRVLFNY-CEEHSIGLVAMGHHL 149

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD +ET  M        +    +       +D  + I RP +       +      ++  
Sbjct: 150 DDLVETSLMNLC----FRANFSTMQPVQPFFDGKIHIIRPMIEIHESVTQRLADVYDLPV 205

Query: 189 CE-----DPSNTDDRFERVRVRRFVRDI 211
            +     D +N      R R++  ++D+
Sbjct: 206 VKPVCPYDQTN-----IRARLKPIIKDL 228


>gi|154705798|ref|YP_001424532.1| C32 tRNA thiolase [Coxiella burnetii Dugway 5J108-111]
 gi|205830574|sp|A9KE14|TTCA_COXBN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|154355084|gb|ABS76546.1| tRNA s2C32 biosynthesis protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 256

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 83/238 (34%), Gaps = 18/238 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  LL  L+S+  +    K    A  +D   +     +   +     
Sbjct: 27  GDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSALRGWLD 82

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +I + +++                  +     R  +I  +A+    + I   H  DD 
Sbjct: 83  DKKIPYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGHHRDDL 142

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T+ M    +   +    S     +  +    + RP   C+  DI  + +++       
Sbjct: 143 IQTLLMSVFYNGQIR----SMPPKLLSDNKRHVLIRPLAYCQERDIIKYAMEQQFPLI-- 196

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           P N     ++  +R+ V+ +         K   ++   ++N     +  +   + R +
Sbjct: 197 PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNFREL 253


>gi|261414858|ref|YP_003248541.1| PP-loop domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371314|gb|ACX74059.1| PP-loop domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327597|gb|ADL26798.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 286

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 15/192 (7%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F++ I++ +     +     I V +SGG DSM L+  L  +L   S  K     + +D  
Sbjct: 27  FITAIKNYKL----IEEGDKIAVCISGGKDSM-LMAKLIQMLHRHSDVKFDVEYLVMDPG 81

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI 117
             E  +   + +      L I  +V         +  +        + R   +   AK +
Sbjct: 82  YNEINR---QKIESNAKLLEIPITVFETNIFDVANNTERSPCYVCAKMRRGHLYHKAKDL 138

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               I   H   D +ET  M        +GM       ++ +   + + RP      +DI
Sbjct: 139 GCNKIALGHHLSDVIETTVMAMFYGSQLQGM--MPKLHSLNFG-GMELIRPMYCINEQDI 195

Query: 178 RSFLLQRNISWC 189
            ++     + + 
Sbjct: 196 INWKNYNGLQFI 207


>gi|145641388|ref|ZP_01796967.1| DNA topoisomerase I [Haemophilus influenzae R3021]
 gi|145273931|gb|EDK13798.1| DNA topoisomerase I [Haemophilus influenzae 22.4-21]
          Length = 313

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 77/220 (35%), Gaps = 22/220 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             +R+ + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIRVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLTYCKEKDIEKYAIAKEFPII- 211

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            P N        +R  V+  + + D          F  ++
Sbjct: 212 -PCNLCGSQPNLQRQVVKEMLNNWDRQYPGRLETMFSAMQ 250


>gi|293396003|ref|ZP_06640284.1| PP-loop family protein [Serratia odorifera DSM 4582]
 gi|291421501|gb|EFE94749.1| PP-loop family protein [Serratia odorifera DSM 4582]
          Length = 312

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 67/185 (36%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  +L  L ++            A+++D   +        ++     
Sbjct: 39  GDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLIAVNLD-QKQPG---FPEHILPAYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  DGLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTASELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L+T+++        KGM    M D    D    + RP   CR +DI  F + +      
Sbjct: 154 ILQTLFLNMFYGGKMKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAIAKEYPII- 208

Query: 191 DPSNT 195
            P N 
Sbjct: 209 -PCNL 212


>gi|153207650|ref|ZP_01946314.1| PP-loop family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212218511|ref|YP_002305298.1| C32 tRNA thiolase [Coxiella burnetii CbuK_Q154]
 gi|254789872|sp|B6J7A4|TTCA_COXB1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|120576469|gb|EAX33093.1| PP-loop family protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212012773|gb|ACJ20153.1| tRNA s2C32 biosynthesis protein [Coxiella burnetii CbuK_Q154]
          Length = 256

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 83/238 (34%), Gaps = 18/238 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  LL  L+S+  +    K    A  +D   +     +   +     
Sbjct: 27  GDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSALRGWLD 82

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             +I + +++                  +     R  +I  +A+    + I   H  DD 
Sbjct: 83  DKKIPYEILTRDTYSIVKEKIPAGKMYCSLCSRLRRGIIYRYAEEQGFSKIALGHHRDDL 142

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           ++T+ M    +   +    S     +  +    + RP   C+  DI  + +++       
Sbjct: 143 IQTLLMSVFYNGQIR----SMPPKLLSDNKRHVLIRPLAYCQERDIIKYAMEQQFPLI-- 196

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           P N     ++  +R+ V+ +         K   ++   ++N     +  +   + R +
Sbjct: 197 PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNMLRALSNIKPSQLMDHELWNFREL 253


>gi|300313690|ref|YP_003777782.1| cell cycle control ATPase [Herbaspirillum seropedicae SmR1]
 gi|300076475|gb|ADJ65874.1| ATPase of the PP-loop superfamily implicated in cell cycle control
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 25/211 (11%)

Query: 15  SLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++    +++A  SGG+DS  +L  L  + S     K +  A+++D   +        ++
Sbjct: 59  DMIRDGDVIMACMSGGADSYTMLDTLRYLQSVAPV-KFEIIAVNLD-QKQPG---FPEHI 113

Query: 74  S-DVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +   R+ + + +V             P     +     R  ++   AK + AT I   
Sbjct: 114 LPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTTCSLCSRLRRGILYRVAKELGATKIALG 173

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQR 184
           H  DD L T  +         G  +  M   ++ D     + RP    R  DI+ +    
Sbjct: 174 HHRDDILHTFMLNMF-----YGGKIKTMPPKLIADDGENVVIRPLAYVREPDIKKYAAAM 228

Query: 185 NISWCEDPSNT---DDRFERVRVRRFVRDID 212
                  P N        +R  +R  + + +
Sbjct: 229 QFPII--PCNLCGSQPNLQRQAMREMLNEWE 257


>gi|256821945|ref|YP_003145908.1| PP-loop domain-containing protein [Kangiella koreensis DSM 16069]
 gi|256795484|gb|ACV26140.1| PP-loop domain protein [Kangiella koreensis DSM 16069]
          Length = 305

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 17/184 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  LL  L  +         +  A+++D   +    ++V    +   
Sbjct: 41  GDKIMVCLSGGKDSYTLLDILMGLQKSAPVS-FELIAVNLD-QKQPGFPEQVLP--NYLK 96

Query: 79  RLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + + ++          +        +     R  +I   A+    T I   H  DD 
Sbjct: 97  SVGVPYEIIEEDTYSVVKSIIPEGKTTCSLCSRLRRGIIYSWAEQNGITKIALGHHRDDI 156

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+++        K    S        D    + RP   C+ +DI  F   +       
Sbjct: 157 IETLFLNMFFGGKMK----SMPPKLKSDDGKHIVIRPLAYCKEKDIAKFAKLKEFPII-- 210

Query: 192 PSNT 195
           P N 
Sbjct: 211 PCNL 214


>gi|34499586|ref|NP_903801.1| hypothetical protein CV_4131 [Chromobacterium violaceum ATCC 12472]
 gi|81654212|sp|Q7NQK6|TTCA_CHRVO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|34105437|gb|AAQ61792.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 319

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 22/229 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L  +        I FS ++V+  L +       +V  +  
Sbjct: 41  GDRVMVCLSGGKDSYTLLDILRGLQKS---APINFSIVAVN--LDQKQPGFPEHVLPEYL 95

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V                   +     R  ++   A  + AT I   H  DD
Sbjct: 96  KSIGVEYRIVEEDTYSIVKRLVPEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDD 155

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K M        +  D    + RP   CR +DI  +   +      
Sbjct: 156 ILHTLFLNMFYGGKMKAM----PPKLVSDDGRHMVIRPLAYCREKDIIRYADWKAFPII- 210

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            P N        +R  V+  V D D          F+ L+  V + +A 
Sbjct: 211 -PCNLCGSQPNLQRQVVKEMVNDWDKRFPGRVESMFRALQNVVPSHLAD 258


>gi|311695007|gb|ADP97880.1| PP-loop domain protein [marine bacterium HP15]
          Length = 304

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 15/176 (8%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSRLRI- 82
           +SGG DS  +L  L ++         +  A+++D   +    +EV   Y+S +     I 
Sbjct: 56  LSGGKDSYAMLDILLNLQKSAPVS-FELIAVNLD-QKQPGFPEEVLPEYLSSMGIEYHII 113

Query: 83  ---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
               +S+V  K  + +T         R  ++   A+    T I   H  DD LET+++  
Sbjct: 114 EKDTYSIVKEKVPEGKT-TCGLCSRLRRGILYNFAEEHGVTKIALGHHRDDLLETLFLNM 172

Query: 140 QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                 K M      D    D    + RP    R +DI  +   R       P N 
Sbjct: 173 FYGGKLKSMPPVLHSD----DGRNTVIRPLAYSREKDIARYAGLREFPII--PCNL 222


>gi|212696527|ref|ZP_03304655.1| hypothetical protein ANHYDRO_01065 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676463|gb|EEB36070.1| hypothetical protein ANHYDRO_01065 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 123

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F + +E  R    +      I+V  SGG DS  L+  L+ +   + F KI      ++H 
Sbjct: 11  FKNTVEKHRLIEEN----DTIIVGASGGPDSQFLIYLLNEL---KDFYKIDIILAHLNHM 63

Query: 62  LRETAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            R+ A D+   V +   +L     ++H  +     + +     A R  RY   +   K +
Sbjct: 64  HRKDAIDDENLVIETGKKLSLKTYVSHKSMDDYAKEKKISSENAGRILRYEFFNSLKKKL 123


>gi|291287571|ref|YP_003504387.1| PP-loop domain protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884731|gb|ADD68431.1| PP-loop domain protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 298

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 70/206 (33%), Gaps = 27/206 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  +E      +   +   I+V +SGG DS+ L   LH +  + +   I          
Sbjct: 30  FIKQVEKGIKEYKMFDFSDKIMVCISGGKDSLVLWYLLHKMGYETTGMYINL-------G 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK------------NSKPQTGLMAAAREARYAL 109
           + E ++  +R V     +  +   +V+                +    +   A   RY  
Sbjct: 83  IGEYSEKSLRKVEAFTEKFGLKAVIVNLTELGHPIPLLEKSVKRHACSICGIA--KRY-Y 139

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISR 167
            ++ A   N  ++ T H  DD+   +     +        LS M   +  + +      +
Sbjct: 140 FNKVAYENNFDVVATGHNLDDESARLLGNVLK---WDPAYLSKMDPNLPEEGDYIKRKVK 196

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPS 193
           P +R    ++ +F     I +  D  
Sbjct: 197 PLIRLTELEVGAFAFMNGIDYITDEC 222


>gi|171464268|ref|YP_001798381.1| PP-loop domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|254790150|sp|B1XSG8|TTCA_POLNS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|171193806|gb|ACB44767.1| PP-loop domain protein [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 302

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 24/221 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-----------AK 67
              ++V VSGG DS  +L  L  +  +R+    +  A+++D   +             + 
Sbjct: 35  GDKVMVCVSGGKDSYAMLDLLMKL-RERAPINFEIVAVNLD-QKQPNFPTNILPNYLKSL 92

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           D   ++ +      I   V+   + K   GL +     R  ++   A  + AT I   H 
Sbjct: 93  DIQYHIEEQ-DTYSIVKRVIP--DGKTTCGLCS---RLRRGILYRVADELGATKIALGHH 146

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD LET+ +        KGM           D    + RP      + +  +    N  
Sbjct: 147 RDDILETLMLNMFYAGKLKGM----PPKLRSDDGKHIVIRPLAYVPEKLLERYSADMNFP 202

Query: 188 WC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
               D   +    +R  ++  +RD +          F+ + 
Sbjct: 203 IIPCDLCGSQPNLQRQVMKEMLRDWEKKHPGRVENLFRSMH 243


>gi|317154147|ref|YP_004122195.1| PP-loop domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944398|gb|ADU63449.1| PP-loop domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 309

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 22/197 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E+     +   +   ILVA+SGG DS+ L++ L +            + + +D  
Sbjct: 30  FTRQVETAIRREKMFTHEERILVALSGGKDSLSLMLELAA-------QGYDVTGLHIDLG 82

Query: 62  LRETAKDEVR-YVSDVCSRLRIAHSVVSWKNSK---------PQTGLMAAAREARYALIS 111
           +   +    R  V   CS   +   V+  +                + +     +    +
Sbjct: 83  I-PGSSPSARVKVEAFCSSHGLKLEVLEMEKEGLPIPDIKAYVNRPVCSVCGRIKRHHFN 141

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFL 170
             A       + T H  DD++  ++  + R        LS    T+      +   +P  
Sbjct: 142 RIAMEGGYDALATGHNLDDEVARLFANTLR---WDTAYLSDQGPTLPAREGFVRKVKPLF 198

Query: 171 RCRREDIRSFLLQRNIS 187
           R    +  ++   + I 
Sbjct: 199 RLSEFETANYAFLKGIE 215


>gi|126724912|ref|ZP_01740755.1| hypothetical protein RB2150_13791 [Rhodobacterales bacterium
           HTCC2150]
 gi|126706076|gb|EBA05166.1| hypothetical protein RB2150_13791 [Rhodobacterales bacterium
           HTCC2150]
          Length = 279

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 15/175 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
             A  +V +SGG DS  LL  LH +   RS   +   A+++D   +         +    
Sbjct: 44  RGARWMVCMSGGKDSYTLLAVLHELQ-WRSLLPVDILAVNLD---QGQPGFPATVLPKFL 99

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           S   + H +       +            +     R + +   A+    + I+  H  DD
Sbjct: 100 SDKGVPHRIEYQDTYSIVMDKVPAGRTFCSLCSRLRRSHLYRIAREEGCSAIVLGHHRDD 159

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            LET +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 160 ILETFFMNLFHG----GRLATMPPKLVNEEGDLFLYRPLAHVAEVDCEKFAQALN 210


>gi|15965538|ref|NP_385891.1| hypothetical protein SMc00534 [Sinorhizobium meliloti 1021]
 gi|15074719|emb|CAC46364.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 313

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 78/239 (32%), Gaps = 29/239 (12%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59
             +  VR  +     L      LV VSGG DS  LL  L  +   R    ++  A ++D 
Sbjct: 63  RLLRQVRQALDDFGMLKGSRRWLVGVSGGKDSYSLLALLMDLQ-WRGLLPVELVACNLDQ 121

Query: 60  -------HCLRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYA 108
                  H L         Y+  +  + RI +     +V  K     T   +     R  
Sbjct: 122 GQPNFPKHVL-------PDYLRSIGVKHRIEYRDTYSIVKEKVPAGAT-YCSLCSRLRRG 173

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +    +      ++  H  +D LET +M         G   S     +  + +L + RP
Sbjct: 174 NLYRIGREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLTVLRP 229

Query: 169 FLRCRREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                 +D+  F           D   + D  ER  ++  + DI+      K    + L
Sbjct: 230 LAYAAEDDLAKFAAAMEFPIIPCDLCGSQDGLERNAMKAMLADIERRMPGRKDTMLRAL 288


>gi|145629546|ref|ZP_01785344.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Haemophilus influenzae 22.1-21]
 gi|144978389|gb|EDJ88153.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Haemophilus influenzae 22.1-21]
          Length = 310

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 39  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             +R+ + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  ESIRVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 154 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAIAKKFPII- 208

Query: 191 DPSNT 195
            P N 
Sbjct: 209 -PCNL 212


>gi|285016886|ref|YP_003374597.1| hypothetical protein XALc_0065 [Xanthomonas albilineans GPE PC73]
 gi|283472104|emb|CBA14611.1| hypothetical protein XALc_0065 [Xanthomonas albilineans]
          Length = 287

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 13/178 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYV 73
           +     ++V +SGG DS  LL  L  +         +  A+++D   +     +V   Y+
Sbjct: 43  IAAGDKVMVCLSGGKDSYTLLDILLQLQRKAPVP-FELVAVNLD-QKQPGFPADVLPDYL 100

Query: 74  SDVCSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                   +       V  +       L +     R   +  +A     + I   H  DD
Sbjct: 101 RKRGVAWDVIEQDTYSVVTRVVPEGKTLCSLCSRLRRGALYRYAAEHGISKIALGHHCDD 160

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNIS 187
            + T +M            L+ M   +  D     + RP    R  DI ++   R+  
Sbjct: 161 MVATFFMNLF-----FHAKLAAMAPLLRSDDGQHVVIRPLAYVREHDIAAYAQARHFP 213


>gi|289209738|ref|YP_003461804.1| PP-loop domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945369|gb|ADC73068.1| PP-loop domain protein [Thioalkalivibrio sp. K90mix]
          Length = 269

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 18/219 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVC 77
              ILV +SGG DS+  L+ L   L+ R+  + +  A++++          E + + D  
Sbjct: 31  GDRILVGLSGGKDSLT-LLWLLHNLARRAPVRFEVGAVTIN----PEIEGFEPQRLMDYL 85

Query: 78  SRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
               I +  VS   ++            +     +  L+   A+     ++      DD 
Sbjct: 86  GGYGIPYHFVSEPIAELAGEHMDNDSFCSFCSRMKRGLMYRTAREHGYNVLALGQHLDDL 145

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
            E+  M +      + M      D      +L + RP +  R    R F     +    D
Sbjct: 146 AESFMMSAFHGGQLRTMKAHYAID----AGDLRVIRPLVYVRERQTRDFAEAAGLPVILD 201

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             N    F     R  ++ +         + F++LR  +
Sbjct: 202 --NCPACFAMPTQREHMKQLLAQEEAQHPRLFRNLRTTL 238


>gi|30468051|ref|NP_848938.1| cell-cycle protein mesJ family [Cyanidioschyzon merolae strain 10D]
 gi|61216632|sp|Q85G85|TILS_CYAME RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|30409151|dbj|BAC76100.1| cell-cycle protein mesJ family [Cyanidioschyzon merolae strain 10D]
          Length = 290

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLR 81
           L+A+SGG DS+ LL  +H ++                     + A   V Y+S       
Sbjct: 29  LLAISGGQDSLCLLKFMHDLVHHHLVVVHFDH------RWSCSLAALRVYYLSRYM---- 78

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
             H    +  +         AR+ RYA + +     ++  I TAHT  D LET   +   
Sbjct: 79  --HLAWRYFRTALPITTEQDARQYRYANLIQLLYQTHSHAICTAHTASDDLETYLDQWIS 136

Query: 142 DYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
               +G+  L  +  + +      + RP L   R     F L   +    D SN    F+
Sbjct: 137 LRHPEGIWRLCHLSGSQI------LFRPLLHLTRAQTHWFTLVHYLPIWSDVSNYQITFK 190

Query: 201 RVRVRRFVRD 210
           R ++R  +  
Sbjct: 191 RNQLRHQLIP 200


>gi|310823887|ref|YP_003956245.1| tRNA 2-thiocytidine biosynthesis protein ttca [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396959|gb|ADO74418.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Stigmatella
           aurantiaca DW4/3-1]
          Length = 279

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 16/219 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I+V VSGG DS  LL  L  +   R+  + +  A+++D   +         +  
Sbjct: 25  IQEGDRIMVGVSGGKDSYTLLYLLREMQR-RAPVRFELLAVNLD---QGHPGFPADTLEG 80

Query: 76  VCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
              +    +         +  + + P     +     R  ++   A  +  T I   H  
Sbjct: 81  YFQKEGYPYKMLKEDTYSIVLEKTPPGKTQCSVCSRMRRGILYTAAVELGCTKIALGHHR 140

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD + T+ +         G   +        D    + RP      ++I  F   +    
Sbjct: 141 DDLIHTLLLNLF----FAGSLKAMPPLLRSDDGRNTVIRPLCYAPEKEIAQFAELKGFPI 196

Query: 189 C-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
              D   + +  +R R++R V ++      ++      +
Sbjct: 197 IPCDLCGSQENLQRKRMQRLVEELGREIPNVRQSLLSAM 235


>gi|330823185|ref|YP_004386488.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alicycliphilus
           denitrificans K601]
 gi|329308557|gb|AEB82972.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Alicycliphilus
           denitrificans K601]
          Length = 310

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L  +   R+  K    A+++D   +        +V  D  
Sbjct: 50  GDRIMVCMSGGKDSYTLLDILRRLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPDYF 104

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +       V  +         +     R A++ + A  +  T +   H  DD
Sbjct: 105 KSIGVEYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADELGCTKLALGHHRDD 164

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            + T+ +        KGM        +  D    + RP      +D   +   +      
Sbjct: 165 IVATLMLNMFYGGRMKGM----PPKLVSDDGRHVVIRPLCYVPEKDTARWAQYQQFPII- 219

Query: 191 DPSNT 195
            P N 
Sbjct: 220 -PCNL 223


>gi|171056792|ref|YP_001789141.1| C32 tRNA thiolase [Leptothrix cholodnii SP-6]
 gi|205830600|sp|B1Y629|TTCA_LEPCP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|170774237|gb|ACB32376.1| PP-loop domain protein [Leptothrix cholodnii SP-6]
          Length = 326

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 19/250 (7%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS G+L  L  +   R+       A+++D   ++        +  
Sbjct: 52  IQEGDRVMVCLSGGKDSYGMLDILLGLQ-QRAPITFSIVAVNLD---QKQPGFPEHILPA 107

Query: 76  VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                 +   +       +  +       + +     R  ++   A  + AT I   H  
Sbjct: 108 YLKARGVEFHIENQDTYSIVKRVIPEGKTMCSLCSRLRRGILYRVADELGATKIALGHHR 167

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD L TV++        KGM        +  D    + RP       D+  +   R    
Sbjct: 168 DDFLGTVFLNMFFGSKLKGM----PPKLVSDDGRHTVIRPLAYVAETDLERWAEHRAFPI 223

Query: 189 CEDP-SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV--NNAVAMLIPKYLTVH 245
                  T D  +RV+++  +RD D      ++        +V  ++ +   +  + T+ 
Sbjct: 224 IPCTLCGTQDNLQRVQIKHMLRDWD-QRFPGRIDNMHRAFSQVVPSHLMDRALFPFETLV 282

Query: 246 MRSIIAISQD 255
              +   + D
Sbjct: 283 PTGVADPAGD 292


>gi|160878340|ref|YP_001557308.1| PP-loop domain-containing protein [Clostridium phytofermentans
           ISDg]
 gi|160427006|gb|ABX40569.1| PP-loop domain protein [Clostridium phytofermentans ISDg]
          Length = 288

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 51/218 (23%)

Query: 10  RFFVRS------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI------- 56
           R FV++      +     I V +SGG DSM L   +  +      GKI F  +       
Sbjct: 21  RPFVKAVQEYELIKEGDKIAVCISGGKDSMLLAKCMQELQK---HGKIPFELVFLVMDPG 77

Query: 57  --SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALI 110
              ++   R+T       + +    L I   +         ++            R   +
Sbjct: 78  YNEIN---RQT-------IINNAKLLNIPIEIFESNIFDIVAEVDESPCYLCARMRRGYL 127

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL------NLW 164
            ++AK      I   H FDD +ET+ M         GM  SG   T++  L       + 
Sbjct: 128 YKNAKAHGCNKIALGHHFDDVIETILM---------GMLYSGQIQTMMPKLHSTNFEGME 178

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
           + RP    + + I  +     + + +       RF   
Sbjct: 179 LIRPMYYVKEDAILHWKQFHELQFIQCAC----RFTEN 212


>gi|254498126|ref|ZP_05110881.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254352641|gb|EET11421.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 281

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 17/182 (9%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L  +   RS  K +  + ++D   +     +   +  
Sbjct: 25  IQRGDRVMVCLSGGKDSFTLLTILEQLRR-RSGNKFELFSFTLD---QAQPGWDDSALRQ 80

Query: 76  VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                 I H +++                  +     R  +I  +A+      I   H  
Sbjct: 81  WLEDRSIKHEILTRDTYSIVKEKIPEGKTYCSLCSRLRRGIIYRYAEENGYNKIALGHHR 140

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNIS 187
           DD + T+ M    +   +      M   +L D    I  RP    + +DI +F   +   
Sbjct: 141 DDLVRTLMMSILYNGDIRS-----MPPKLLSDNKKHIVIRPLSYVQEKDIIAFANAQAFP 195

Query: 188 WC 189
             
Sbjct: 196 II 197


>gi|218295238|ref|ZP_03496074.1| PP-loop domain protein [Thermus aquaticus Y51MC23]
 gi|218244441|gb|EED10966.1| PP-loop domain protein [Thermus aquaticus Y51MC23]
          Length = 321

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 23/204 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+   E      R L     +LVAVSGG DS+ L   LH +  +     ++         
Sbjct: 30  FVKETERAIRRHRMLHPGERVLVAVSGGKDSLALWDVLHRLGYEAVGLHLEL-------G 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA---AREA--------RYALI 110
           +   ++  +           +   VV  K +        A    R A        RY +I
Sbjct: 83  IGAYSRRSLEVTQAFAKERGLPLLVVDLKEAYGFGVPELAELSGRVACSACGLSKRY-II 141

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPF 169
           ++ A      ++ T H  DD+   ++         +   L      +     L    +PF
Sbjct: 142 NQVAVEEGFRVVATGHNLDDEAAVLFGNLL---NPQEDALVRQGPVLPEKPGLAARVKPF 198

Query: 170 LRCRREDIRSFLLQRNISWCEDPS 193
            R    ++ S+ L R I +  +  
Sbjct: 199 YRFSEREVLSYTLLRGIRYLHEEC 222


>gi|120612867|ref|YP_972545.1| PP-loop domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|205830359|sp|A1TUY3|TTCA_ACIAC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|120591331|gb|ABM34771.1| tRNA s(2)C-32 sulfurtransferase [Acidovorax citrulli AAC00-1]
          Length = 310

 Score = 81.5 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 17/189 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ++V +SGG DS  LL  L  +   R+       A+++D   ++        +
Sbjct: 45  RMIEEGDKVMVCMSGGKDSYTLLDILIKLQK-RAPIHFDLVAVNLD---QKQPGFPEHIL 100

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   +   +       +  +               R  ++   A  +  T I   H
Sbjct: 101 PEYLAATGVPFHIENQDTYSIVKRVVPEGKTTCGLCSRLRRGILYRVADELGCTKIALGH 160

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD L+T+ +        K M        +  D    + RP      +D   +  QR  
Sbjct: 161 HRDDILQTLLLNMFFGGKMKAM----PPKLVSDDGRHVVIRPLAYVPEKDTTRWAQQRQF 216

Query: 187 SWCEDPSNT 195
                P N 
Sbjct: 217 PII--PCNL 223


>gi|71065332|ref|YP_264059.1| hypothetical protein Psyc_0772 [Psychrobacter arcticus 273-4]
 gi|123649139|sp|Q4FTN3|TTCA_PSYA2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|71038317|gb|AAZ18625.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 381

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 82/263 (31%), Gaps = 23/263 (8%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           ++R F  +++    ++ V VSGG DS      L  +L  +    I F  ++V+    +  
Sbjct: 83  AIRDF--NMIEDGDVVMVCVSGGKDS---YTLLDILLLLKRIAPIHFDIVAVNLDQKQPG 137

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV       +   IAH ++                   +A    R   +   AK I 
Sbjct: 138 YPEEVLPA--YLNEQGIAHYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQIG 195

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L T ++      A K    S     +  D    + RP      +DI 
Sbjct: 196 ATKIALGHHRDDMLATFFLNLFHGGALK----SMPPKLLSDDKQNMLIRPLAYVEEKDII 251

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +   +       P N          R  + D+         ++   +   + N     +
Sbjct: 252 EYARLKEFPII--PCNLCGSQT-NLQRAIINDMLREWDDAHPQRLASIFKAMQNVAPSQL 308

Query: 239 PKYLTVHMRSIIAISQDILNIDS 261
                    ++     D   +  
Sbjct: 309 ADRELFDFETLSLERDDNERLFE 331


>gi|219130024|ref|XP_002185175.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403354|gb|EEC43307.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 220

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 42/196 (21%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---------------- 59
           L     +L+ +SGG DS+ LL  L          K +    ++D                
Sbjct: 28  LEEGDRLLLGLSGGKDSLSLLHCLLEFQKKLPI-KFEIEVCTIDPMTPSFDPSPLIPYIN 86

Query: 60  ------HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH 113
                 H                     ++ +  S K+ K  + L A     +   +   
Sbjct: 87  TLGLKYH---------------FIKDNIVSRASSSGKDGKVVSSLCAYCARMKRGNLYAC 131

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+  N   ++ A   DD  E+  M    +   +    +   +  +    + + RP   CR
Sbjct: 132 ARRNNCNKLVLAQHLDDCAESFMMSVMHNGFLR----TMKANYQINAGGISVIRPLAYCR 187

Query: 174 REDIRSFLLQRNISWC 189
              +  F    N+   
Sbjct: 188 ESLMTEFARSANLPVI 203


>gi|329123502|ref|ZP_08252066.1| PP-loop family protein [Haemophilus aegyptius ATCC 11116]
 gi|327471084|gb|EGF16539.1| PP-loop family protein [Haemophilus aegyptius ATCC 11116]
          Length = 313

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 42  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 96

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 97  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 156

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 157 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAITKEFPII- 211

Query: 191 DPSNT 195
            P N 
Sbjct: 212 -PCNL 215


>gi|319776349|ref|YP_004138837.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus
           influenzae F3047]
 gi|317450940|emb|CBY87166.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Haemophilus
           influenzae F3047]
          Length = 276

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 5   GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 59

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 60  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 119

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            L T+++        K    S     I  D    + RP   C+ +DI  + + +      
Sbjct: 120 MLATLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCKEKDIEKYAITKEFPII- 174

Query: 191 DPSNT 195
            P N 
Sbjct: 175 -PCNL 178


>gi|297587563|ref|ZP_06946207.1| PP-loop family protein [Finegoldia magna ATCC 53516]
 gi|297574252|gb|EFH92972.1| PP-loop family protein [Finegoldia magna ATCC 53516]
          Length = 275

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 14/175 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD-RSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              I V +SGG DS+ L      +     +   ++F A          +++ +R   +  
Sbjct: 37  GDKIAVCMSGGKDSLLLAKLFQELQKHGMNNFDLEFIA-----MNPGYSEENIRLEKENF 91

Query: 78  SRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +L I +      V S                 R   +   AK +    +   H FDD +
Sbjct: 92  EKLNIPYHMYDTDVFSVSEKISSNNPCYMCARMRRGALYSKAKELGCNKMALGHHFDDVI 151

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           ET+ +        K M       +  ++  + + RP    R E ++S+L    + 
Sbjct: 152 ETILLNVLCSGNYKTM--MPKLHSNNFE-GIELIRPMYLIREESVKSWLNYSGLK 203


>gi|222086149|ref|YP_002544681.1| hypothetical protein Arad_2599 [Agrobacterium radiobacter K84]
 gi|221723597|gb|ACM26753.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 290

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 81/236 (34%), Gaps = 21/236 (8%)

Query: 4   SPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR  +   + L      LV VSGG DS GLL  L  +   R    ++  A ++D 
Sbjct: 41  RLLRQVRQALDDFQMLKGQKRWLVGVSGGKDSYGLLSILLDL-KWRGLLPVELIACNLDQ 99

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  +  +++ + H +       +  +         +     R   +  
Sbjct: 100 G-QPN---FPKHVLPEYLTKIGVEHRIEYRDTYSIVKEKVPAGATYCSLCSRLRRGNLYR 155

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 156 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 211

Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +D+  F           D   + D  +R  ++  + DI+      K    + L 
Sbjct: 212 AEDDLAKFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLGDIERRMPGRKDTMLRALA 267


>gi|88703490|ref|ZP_01101206.1| conserved hypothetical protein [Congregibacter litoralis KT71]
 gi|88702204|gb|EAQ99307.1| conserved hypothetical protein [Congregibacter litoralis KT71]
          Length = 285

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 20/204 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+V +SGG DS  +L  L ++         +  A+ +D   ++        +     + 
Sbjct: 38  RIMVCLSGGKDSYAMLDILQNLQRSAPVS-FELIAVHMD---QKQPGYPPEILPAYLDKQ 93

Query: 81  RIAHSVVSWKNSKPQTGL-------MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            I + ++          +              R   +   A++I A+ I   H  DD +E
Sbjct: 94  NIEYHILEKDTYSVVKSVIPEGKTTCGLCSRLRRGTLYGFAESIGASRIALGHHRDDIVE 153

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+++        K M    + D    D    + RP   C+  D+  +  +        P 
Sbjct: 154 TLFLNMFFGGTLKAMPPKLLSD----DGKNVVIRPMAYCKEADLARYAEEMQFPII--PC 207

Query: 194 NT---DDRFERVRVRRFVRDIDLH 214
           N     D  +R  +++ + D +  
Sbjct: 208 NLCGSQDNLQRQAIKKMLVDWERQ 231


>gi|293392314|ref|ZP_06636648.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952848|gb|EFE02967.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 321

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++  +    K +  A+++D   +        ++  +  
Sbjct: 50  GDKVMVCLSGGKDSYTLLDILLNLQQNAPI-KFRIVAVNLD-QKQPG---FPEHILPEYL 104

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 105 KGIGVDYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 164

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            L T+++         G  L  M   ++ D    I  RP   C+ +DI  + + +     
Sbjct: 165 MLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKAFPII 219

Query: 190 EDPSNT 195
             P N 
Sbjct: 220 --PCNL 223


>gi|322804614|emb|CBZ02166.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum
           H04402 065]
          Length = 288

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++++ +  +LV     I VAVSGG DS+ L+  L   L        +   IS+D   
Sbjct: 39  KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113
            E        +  +    C+ L I        +    +   +          R   +   
Sbjct: 96  HED-------IRKLLIDNCNYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H F+D +ET+ +            L     T      L + RP     
Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--QGLELIRPLYYIE 205

Query: 174 REDIRSFLLQRNI 186
            E I+ F+    I
Sbjct: 206 EEYIQKFIQNSGI 218


>gi|260460838|ref|ZP_05809088.1| PP-loop domain protein [Mesorhizobium opportunistum WSM2075]
 gi|259033415|gb|EEW34676.1| PP-loop domain protein [Mesorhizobium opportunistum WSM2075]
          Length = 291

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 20/192 (10%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  S+V P    LVA+SGG DS GLL  L  +   R   ++   A ++D   +  
Sbjct: 44  QAIEDF--SMVRPGERWLVALSGGKDSYGLLAVLLDL-KWRGLLQVDLLACNLDQG-QPN 99

Query: 66  AKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
                +++  D  +   IAH +       V        +   +     R   +   A+  
Sbjct: 100 ---FPKHILPDYLNANGIAHRIEYQDTYSVVTDKLPQGSTYCSLCSRLRRGHLYRIAREE 156

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + ++  H  +D LET +M         G   +     +  D ++ + RP   C   D+
Sbjct: 157 GCSALVLGHHREDILETFFMNLFHG----GRLAAMPPKLLNDDGDVMVLRPLSYCAEIDL 212

Query: 178 RSFLLQRNISWC 189
             F         
Sbjct: 213 EKFAAAMRFPII 224


>gi|182418364|ref|ZP_02949659.1| PP-loop family protein [Clostridium butyricum 5521]
 gi|237666423|ref|ZP_04526408.1| PP-loop domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377746|gb|EDT75290.1| PP-loop family protein [Clostridium butyricum 5521]
 gi|237657622|gb|EEP55177.1| PP-loop domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 288

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 25/194 (12%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++V+ +  +L+     I V +SGG DSM +   L  +       K     +++D   
Sbjct: 39  KFVKAVKEY--NLIEEGDKIAVGISGGKDSMLMAKLLQELQR-HGQVKFDLVFLAMDPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEH 113
                     +  +    C  L I   +         +   +          R   +   
Sbjct: 96  HPE-------IKKLLIENCEHLDIPIHIYDSGIFEVVDRMAKDYPCYLCARMRRGSLYAK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRC 172
           A+      +   H ++D +ET  +         G   + M      +  NL + RP    
Sbjct: 149 AQEFGCNKLALGHHYNDVIETTMLNIL----YAGNFKTMMPKLKAKNFANLELIRPMYYI 204

Query: 173 RREDIRSFLLQRNI 186
             + I+ F+    I
Sbjct: 205 EEDYIKKFINNAGI 218


>gi|170754940|ref|YP_001779993.1| PP-loop family protein [Clostridium botulinum B1 str. Okra]
 gi|169120152|gb|ACA43988.1| PP-loop family protein [Clostridium botulinum B1 str. Okra]
          Length = 288

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++++ +  +LV     I VAVSGG DS+ L+  L   L        +   IS+D   
Sbjct: 39  KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113
            E        +  +    C  L I        +    +   +          R   +   
Sbjct: 96  HED-------IRKLLIDNCDYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H F+D +ET+ +            L     T      L + RP     
Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205

Query: 174 REDIRSFLLQRNI 186
            E I+ F+    I
Sbjct: 206 EEYIQKFIQNSGI 218


>gi|153938765|ref|YP_001389708.1| PP-loop family protein [Clostridium botulinum F str. Langeland]
 gi|152934661|gb|ABS40159.1| PP-loop family protein [Clostridium botulinum F str. Langeland]
 gi|295317796|gb|ADF98173.1| PP-loop family protein [Clostridium botulinum F str. 230613]
          Length = 288

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++++ +  +LV     I VAVSGG DS+ L+  L   L        +   IS+D   
Sbjct: 39  KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113
            E        +  +    C  L I        +    +   +          R   +   
Sbjct: 96  HED-------IRKLLIDNCDYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H F+D +ET+ +            L     T      L + RP     
Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205

Query: 174 REDIRSFLLQRNI 186
            E I+ F+    I
Sbjct: 206 EEYIQKFIQNSGI 218


>gi|148378344|ref|YP_001252885.1| PP-loop family protein [Clostridium botulinum A str. ATCC 3502]
 gi|168184830|ref|ZP_02619494.1| PP-loop family protein [Clostridium botulinum Bf]
 gi|226947572|ref|YP_002802663.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto]
 gi|237793661|ref|YP_002861213.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657]
 gi|148287828|emb|CAL81894.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|182672085|gb|EDT84046.1| PP-loop family protein [Clostridium botulinum Bf]
 gi|226843802|gb|ACO86468.1| PP-loop family protein [Clostridium botulinum A2 str. Kyoto]
 gi|229260770|gb|ACQ51803.1| PP-loop family protein [Clostridium botulinum Ba4 str. 657]
          Length = 288

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++++ +  +LV     I VAVSGG DS+ L+  L   L        +   IS+D   
Sbjct: 39  KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113
            E        +  +    C  L I        +    +   +          R   +   
Sbjct: 96  HED-------IRKLLIDNCDYLNIPINLFDSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H F+D +ET+ +            L     T      L + RP     
Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205

Query: 174 REDIRSFLLQRNI 186
            E I+ F+    I
Sbjct: 206 EEYIQKFIQNSGI 218


>gi|119383626|ref|YP_914682.1| PP-loop domain-containing protein [Paracoccus denitrificans PD1222]
 gi|205830607|sp|A1B0E2|TTCA_PARDP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|119373393|gb|ABL68986.1| PP-loop domain protein [Paracoccus denitrificans PD1222]
          Length = 297

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 15/179 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                LV +SGG DS  LL  LH +   R    ++  A ++D   +         + +  
Sbjct: 52  PGDRWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVELLACNLD---QGQPGFPATVLPEFL 107

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++ ++ H +       +  +         +     R   +   A+      ++  H  DD
Sbjct: 108 TQRQVPHRIEYQDTYSIVKEKVPEGRTYCSLCSRLRRGNLYRIAREEGCQAVVLGHHRDD 167

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            LET +M         G   S     +  + +L + RP       D   F    N    
Sbjct: 168 ILETFFMNLFHG----GRLASMPPKLLNEEGDLNVLRPLAFVAEADCDRFARAMNYPVI 222


>gi|169824156|ref|YP_001691767.1| PP family ATPase [Finegoldia magna ATCC 29328]
 gi|302380842|ref|ZP_07269305.1| PP-loop family protein [Finegoldia magna ACS-171-V-Col3]
 gi|303234889|ref|ZP_07321514.1| PP-loop family protein [Finegoldia magna BVS033A4]
 gi|167830961|dbj|BAG07877.1| ATPases of the PP superfamily [Finegoldia magna ATCC 29328]
 gi|302311337|gb|EFK93355.1| PP-loop family protein [Finegoldia magna ACS-171-V-Col3]
 gi|302494007|gb|EFL53788.1| PP-loop family protein [Finegoldia magna BVS033A4]
          Length = 275

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 12/174 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I V +SGG DS+ LL  L   L            I+++    E      +   +   
Sbjct: 37  GDKIAVCMSGGKDSL-LLAKLFQELQKHGMNNFDLEFIAMNPGYSEENTRLEK--ENF-E 92

Query: 79  RLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           +L I +      V S                 R   +   AK +    +   H FDD +E
Sbjct: 93  KLNIPYHMYDTDVFSVSEKISSNNPCYMCARMRRGALYSKAKELGCNKMALGHHFDDVIE 152

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           T+ +        K M       +  ++  + + RP    R E ++S+L    + 
Sbjct: 153 TILLNVLCSGNYKTM--MPKLHSNNFE-GIELIRPMYLIREESVKSWLNYSGLK 203


>gi|56695448|ref|YP_165796.1| C32 tRNA thiolase [Ruegeria pomeroyi DSS-3]
 gi|81350680|sp|Q5LW09|TTCA_SILPO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|56677185|gb|AAV93851.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 294

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 15/179 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R+       LV +SGG DS  LL  L+ +   R    +   A ++D          +   
Sbjct: 45  RADGSTPKWLVCLSGGKDSYTLLAVLYEL-KWRGLLPVDLLACNLDQGQPGFPSTVLP-- 101

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +   R+ + + +       V            A     R   +   A+    + ++  H
Sbjct: 102 -EFLDRMGVPNRIEYQDTYSVVVDKVPQGRTYCALCSRLRRGNLYRIAREEGCSAVVLGH 160

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             DD LET +M         G   +     +  + +L++ RP       D   F    N
Sbjct: 161 HRDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFARAMN 215


>gi|260439428|ref|ZP_05793244.1| PP-loop family protein [Butyrivibrio crossotus DSM 2876]
 gi|292808116|gb|EFF67321.1| PP-loop family protein [Butyrivibrio crossotus DSM 2876]
          Length = 400

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 28/239 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+  IE  +     +     I V +SGG DSM L   L  +  D          I ++  
Sbjct: 154 FVEAIEKYKL----IKDGDRIAVCISGGKDSMLLARMLK-MAKDYRLYDFSPEYIMMNPG 208

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAAAREARYALISEH 113
             E    ++ +         +   +        V     +            R   +   
Sbjct: 209 YMERDMKQMEF-------NNLLFDIPVSYFNTNVFDDVDEIGKNPCFFCSRMRRGHLYRK 261

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK +    I   H +DD +ET  M        + M      D I    ++ + RP    R
Sbjct: 262 AKELGCNKIALGHHYDDVIETTLMSMLYGAQARTMLPVIKSDNI---EDMKLIRPMYLIR 318

Query: 174 REDIRSFLLQRNISWCEDPS--NTDD---RFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
            +DI  +  + N+++ +     NT D      R+R+++ +RD+      +    F  + 
Sbjct: 319 EDDINLWKNRNNLNFVKCACRLNTKDGGEDTIRLRIKKLIRDLTNENPAVPANIFGSMS 377


>gi|158335112|ref|YP_001516284.1| C32 tRNA thiolase [Acaryochloris marina MBIC11017]
 gi|205830358|sp|B0CEK4|TTCA_ACAM1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|158305353|gb|ABW26970.1| conserved hypothetical protein, possible PP loop protein
           [Acaryochloris marina MBIC11017]
          Length = 283

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 15/179 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               I+V +SGG DS  LL  L  +         +  A+++D   +    ++V    +  
Sbjct: 40  AGDRIMVCLSGGKDSYTLLDILLHLQRAAPI-DFEILAVNLD-QKQPNFPEQVLP--NYL 95

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++L++ + +V                 +       R  ++   A+   AT I   H  +D
Sbjct: 96  NQLQVPYRIVEEDTYSTVKRVIPEGKTMCGLCSRLRRGILYRVAQEEQATKIALGHHRED 155

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
            +ET+++        + M    + D   +     + RP   C   DI+ +   R     
Sbjct: 156 IIETLFLNLFHAGKLEAMPPKLLSDNRQH----MVIRPLAYCPEADIQRYADLRQFPII 210


>gi|163785862|ref|ZP_02180328.1| hypothetical protein HG1285_18986 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878868|gb|EDP72906.1| hypothetical protein HG1285_18986 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 229

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 24/200 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +       R       IL+AVSGG DS+ L  AL  +  +     I          
Sbjct: 42  FEKRVAKTIKEFRMFSPKDRILIAVSGGKDSLALWNALVKLGYEADGFYIDL-------G 94

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----------KPQTGLMAAAREARYALIS 111
           + E ++D  R       ++     +VS K              +    A     RY  ++
Sbjct: 95  IDEYSQDSKRLALQFAEKIERPLHIVSLKEEIAPIPQIDQITNRPACSACGTVKRY-YMN 153

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPF 169
           ++AK +   +I T H  DD++  V   +   +    +        +L + N +I   +P 
Sbjct: 154 KYAKELGYNIIATGHNLDDEV-AVLFGNTLHWDIDYL---KRQYPVLREENGFIRKVKPL 209

Query: 170 LRCRREDIRSFLLQRNISWC 189
            +   ++   +    NI + 
Sbjct: 210 CKITEKEAALYAFFNNIEYI 229


>gi|170760980|ref|YP_001785678.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree]
 gi|169407969|gb|ACA56380.1| PP-loop family protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 288

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++++ +  +LV     I VAVSGG DS+ L+  L   L        +   IS+D   
Sbjct: 39  KFVKAIKEY--NLVEDGDRIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113
            E        +  +    C+ L I        +    +   +          R   +   
Sbjct: 96  HED-------IRKLLIDNCNYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H F+D +ET+ +            L     T      L + RP     
Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205

Query: 174 REDIRSFLLQRNI 186
            E I+ F+    I
Sbjct: 206 EEYIQKFIQNSGI 218


>gi|326318898|ref|YP_004236570.1| PP-loop domain-containing protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323375734|gb|ADX48003.1| PP-loop domain protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 310

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 62/190 (32%), Gaps = 19/190 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ++V +SGG DS  LL  L  +   R+       A+++D   ++        +
Sbjct: 45  RMIEEGDKVMVCMSGGKDSYTLLDILIKL-KKRAPIHFDLVAVNLD---QKQPGFPEHIL 100

Query: 74  SDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            +  +   +   +       +  +               R  ++   A  +  T I   H
Sbjct: 101 PEYLATTGVPFHIENQDTYSIVKRVVPEGKTTCGLCSRLRRGILYRVADELGCTKIALGH 160

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRN 185
             DD L+T+ +         G  L  M   ++ D     + RP      +D   +  Q+ 
Sbjct: 161 HRDDILQTLLLNMF-----FGGKLKAMPPKLVSDDGRHVVIRPLAYVTEKDTTRWAQQQQ 215

Query: 186 ISWCEDPSNT 195
                 P N 
Sbjct: 216 FPII--PCNL 223


>gi|225158870|ref|ZP_03725185.1| tRNA(Ile)-lysidine synthetase [Opitutaceae bacterium TAV2]
 gi|224802562|gb|EEG20819.1| tRNA(Ile)-lysidine synthetase [Opitutaceae bacterium TAV2]
          Length = 250

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 21/220 (9%)

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS------------GMCD 155
           A  +          +   H  DD  ET++MR  R     G+                   
Sbjct: 2   AFFAGQLSRRRIRCLFLGHQLDDIAETLFMRVARGSGTAGLAAPRPVHHLDNVGVGSGGG 61

Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
                      RP L   +  I   L     +W ED SN +  F R R+R  V    L A
Sbjct: 62  GGAAGRGRVHLRPLLTLSKARIVDSLAAAGATWREDASNAEGDFFRNRIRLDVLPRWLEA 121

Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQD------ILNIDSTLLFYLLR 269
              ++       +         + +           +++        L   + +   ++R
Sbjct: 122 ASGRVPSQARDALAGAALTRAQLEEDADALDEWAGRVARTDADGRLPLTQLAGVPRAVVR 181

Query: 270 VSAAICGGQISLP---GYRSMERVMLFLKSGKRGCVSIGR 306
               +  G + +      +  + ++  L   +    S+G 
Sbjct: 182 RVLHLWLGSLPVASDLSRQGFDSLLDKLMVARSTRFSLGD 221


>gi|153931917|ref|YP_001382743.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397]
 gi|153935004|ref|YP_001386294.1| PP-loop family protein [Clostridium botulinum A str. Hall]
 gi|152927961|gb|ABS33461.1| PP-loop family protein [Clostridium botulinum A str. ATCC 19397]
 gi|152930918|gb|ABS36417.1| PP-loop family protein [Clostridium botulinum A str. Hall]
          Length = 288

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++++ +  +LV     I VAVSGG DS+ L+  L   L        +   IS+D   
Sbjct: 39  KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95

Query: 63  RETAKDEVRYVSDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            E  +   + + D C+ L I        +    +   +          R   +   A+ +
Sbjct: 96  HEDIR---KLLVDNCNYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSKAQEL 152

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H F+D +ET+ +            L     T      L + RP      E I
Sbjct: 153 GCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIEEEYI 209

Query: 178 RSFLLQRNI 186
           + F+    I
Sbjct: 210 QKFIQNSGI 218


>gi|187777058|ref|ZP_02993531.1| hypothetical protein CLOSPO_00603 [Clostridium sporogenes ATCC
           15579]
 gi|187773986|gb|EDU37788.1| hypothetical protein CLOSPO_00603 [Clostridium sporogenes ATCC
           15579]
          Length = 288

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             I++++ +  +LV     I VAVSGG DS+ L+  L   L        +   IS++   
Sbjct: 39  KFIKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMNPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113
            E        +  +    C+ L I        +    +   +          R   +   
Sbjct: 96  HED-------IRKLLIDNCNYLNIPINLFDSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H F+D +ET+ +            L     T      L + RP     
Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFKSTNF--EGLELIRPLYYVE 205

Query: 174 REDIRSFLLQRNI 186
            E I+ F+    I
Sbjct: 206 EEYIQKFIQNSGI 218


>gi|56460414|ref|YP_155695.1| C32 tRNA thiolase [Idiomarina loihiensis L2TR]
 gi|81363164|sp|Q5QZ01|TTCA_IDILO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|56179424|gb|AAV82146.1| ATPase of the PP-loop superfamily [Idiomarina loihiensis L2TR]
          Length = 300

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 88/250 (35%), Gaps = 25/250 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
             HI+V +SGG DS      L ++L  +    ++FS ++V+  L +       +V     
Sbjct: 33  GDHIMVCLSGGKDSY---TLLDTLLYLQKVAPVRFSLVAVN--LDQKQPGFPEHVLPAYL 87

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           ++L + + +V                   +     R  ++   AK + AT I   H  DD
Sbjct: 88  NKLGVDYKIVEEDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTAKELKATKIALGHHRDD 147

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            +ET+++            L  M   +  D     + RP    R +DI  +         
Sbjct: 148 MIETLFLNMFHGGK-----LKSMPPKLASDNGEHVVIRPLAYAREKDIEQYSAAMEFPII 202

Query: 190 EDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV-NNAVAMLIPKYLTVH 245
             P N     +  +R ++++ +   D          F  ++  V ++     +  +  V 
Sbjct: 203 --PCNLCGSQENLQRKQIKQMLNGWDKQFPGRIESLFTAMQNVVPSHLADSALFDFKAVT 260

Query: 246 MRSIIAISQD 255
              +   + D
Sbjct: 261 ADGVADENGD 270


>gi|78358650|ref|YP_390099.1| hypothetical protein Dde_3611 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78221055|gb|ABB40404.1| Protein of unknown function UPF0021 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 302

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 69/198 (34%), Gaps = 22/198 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E      + L +   +LVA+SGG DS+ L++ L  +  + +   I  +       
Sbjct: 30  FTRQVEKGIRRQKLLTFEDRVLVALSGGKDSLALMLVLSKLGYNVTGLHIDLAI------ 83

Query: 62  LRETAKDEVR-YVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALIS 111
               +    R  V   C +      V         +    ++    + +A  + +    +
Sbjct: 84  --PGSSPVARGVVERFCHKHGFKLIVKEMAEEGLAIPLVKARLNRPVCSACGKIKRYFFN 141

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFL 170
           + A     T++ T H  DD++  ++  + R        LS     +  +       +P  
Sbjct: 142 KTALDEGYTVLATGHNLDDEIARLFSNTLR---WDIAYLSDQGPALPAEGGFARKIKPLY 198

Query: 171 RCRREDIRSFLLQRNISW 188
           R    +  ++   + I +
Sbjct: 199 RLSEFETANYSFLQGIEY 216


>gi|217969129|ref|YP_002354363.1| C32 tRNA thiolase [Thauera sp. MZ1T]
 gi|217506456|gb|ACK53467.1| PP-loop domain protein [Thauera sp. MZ1T]
          Length = 317

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/198 (21%), Positives = 76/198 (38%), Gaps = 20/198 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRL 80
           ++V VSGG DS  LL  L ++  +R+    +  A+++D   +    D   +V       +
Sbjct: 53  VMVCVSGGKDSYTLLSCLLAL-RERAPVDFRIVAMNLD-QKQPGFPD---HVLPAYFESI 107

Query: 81  RIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            + + +V+       K+  P+     +     R  +I   A  I AT I   H  DD LE
Sbjct: 108 GVEYRIVTEDTYSIVKDKIPEGKTTCSLCSRLRRGIIYRTATEIGATRIALGHHRDDMLE 167

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T+++        K M        +  D    + RP   C   DI  F    +      P 
Sbjct: 168 TLFLNMFFGGKIKAM----PPKLVSDDGKHVVIRPLAYCTEADIARFARTMDFPII--PC 221

Query: 194 NTDDRFERVRVRRFVRDI 211
           N     +    R+ ++++
Sbjct: 222 NLCGS-QENAQRKLIKNM 238


>gi|260833476|ref|XP_002611683.1| hypothetical protein BRAFLDRAFT_63633 [Branchiostoma floridae]
 gi|229297054|gb|EEN67693.1| hypothetical protein BRAFLDRAFT_63633 [Branchiostoma floridae]
          Length = 1156

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 38/216 (17%)

Query: 19   PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCLRETAKDEVRYVSDV 76
               +L+ +SGG DS+ LL  L           I  +  A++VD    +TA  +   + + 
Sbjct: 929  GDRVLLCLSGGKDSLSLLHTLRQYQFFAKSKNITFELGAVTVD---PQTASYDPSPLKNY 985

Query: 77   CSRLRIAHS-----VVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             ++L + +      +++   S P  T + +     +   I   A+     ++      DD
Sbjct: 986  LAKLGVPYFYEEQGIMAQAASIPVCTSICSYCSRMKRGRIYACARREGYNVLAMGQHLDD 1045

Query: 131  QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
              E                          + +L + RPF+  R +D+R+F  Q  +    
Sbjct: 1046 LAE-------------------------REEDLRVIRPFVYVREKDLRNFAEQAKLPII- 1079

Query: 191  DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
             P N    FE  + R   + +      L  K FQ L
Sbjct: 1080 -PENCPACFEAPKERHRTKQLLASQELLFPKLFQSL 1114


>gi|168177683|ref|ZP_02612347.1| PP-loop family protein [Clostridium botulinum NCTC 2916]
 gi|182670918|gb|EDT82892.1| PP-loop family protein [Clostridium botulinum NCTC 2916]
          Length = 288

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++++ +  +LV     I VAVSGG DS+ L+  L   L        +   IS+D   
Sbjct: 39  KFVKAIKEY--NLVEDGDKIAVAVSGGKDSI-LMAKLFQELKKHGQINFEIEFISMDPGY 95

Query: 63  RETAKDEVRYVSDV----CSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEH 113
            E        +  +    C+ L I        +    +   +          R   +   
Sbjct: 96  HED-------IRKLLIDNCNYLNIPINLFNSDIFKVIDDIAKDYPCYMCARMRRGALYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H F+D +ET+ +            L     T      L + RP     
Sbjct: 149 AQELGCNKLALGHHFNDVIETILLNVL-YAGNFKTMLPKFRSTNF--EGLELIRPLYYIE 205

Query: 174 REDIRSFLLQRNI 186
            E I+ F+    I
Sbjct: 206 EEYIQKFIQNSGI 218


>gi|289764409|ref|ZP_06523787.1| PP family ATPase [Fusobacterium sp. D11]
 gi|289715964|gb|EFD79976.1| PP family ATPase [Fusobacterium sp. D11]
          Length = 279

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 16/190 (8%)

Query: 3   LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            + I++++ F   L+     I V VSGG DS+ L      +  DRS    +   IS++  
Sbjct: 38  RNFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 94

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKT 116
               A D  ++  ++   + I   +     W+ +  ++         + R  ++ +  + 
Sbjct: 95  F--EAIDVYKFRENLIE-MGIDCELFDANVWQIAFEESPENPCFLCAKMRRGVLYKKVEE 151

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    +   H FDD +ET  +         G   + +         + I RP    R +D
Sbjct: 152 LGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKD 207

Query: 177 IRSFLLQRNI 186
           I +F+    I
Sbjct: 208 IINFMKHNEI 217


>gi|270648390|ref|ZP_06222198.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270317215|gb|EFA28806.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 76

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
          L+A+SGG DS  LL     +   +     +   AI + H L   A    ++  D+C 
Sbjct: 20 LIALSGGLDSTVLLSLFAKLRQKQPHLPPLSVRAIHIHHGLSPNADSWAKHCQDLCD 76


>gi|256026395|ref|ZP_05440229.1| PP family ATPase [Fusobacterium sp. D11]
          Length = 277

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 16/190 (8%)

Query: 3   LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            + I++++ F   L+     I V VSGG DS+ L      +  DRS    +   IS++  
Sbjct: 36  RNFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 92

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKT 116
               A D  ++  ++   + I   +     W+ +  ++         + R  ++ +  + 
Sbjct: 93  F--EAIDVYKFRENLIE-MGIDCELFDANVWQIAFEESPENPCFLCAKMRRGVLYKKVEE 149

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    +   H FDD +ET  +         G   + +         + I RP    R +D
Sbjct: 150 LGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKD 205

Query: 177 IRSFLLQRNI 186
           I +F+    I
Sbjct: 206 IINFMKHNEI 215


>gi|237744628|ref|ZP_04575109.1| PP family ATPase [Fusobacterium sp. 7_1]
 gi|229431857|gb|EEO42069.1| PP family ATPase [Fusobacterium sp. 7_1]
          Length = 279

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 16/190 (8%)

Query: 3   LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            + I++++ F   L+     I V VSGG DS+ L      +  DRS    +   IS++  
Sbjct: 38  RNFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 94

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKT 116
               A D  ++  ++   + I   +     W+ +  ++         + R  ++ +  + 
Sbjct: 95  F--EAIDVYKFRENLIE-MGIDCELFDANVWQIAFEESPENPCFLCAKMRRGVLYKKVEE 151

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    +   H FDD +ET  +         G   + +         + I RP    R +D
Sbjct: 152 LGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKD 207

Query: 177 IRSFLLQRNI 186
           I +F+    I
Sbjct: 208 IINFMKHNEI 217


>gi|212212518|ref|YP_002303454.1| C32 tRNA thiolase [Coxiella burnetii CbuG_Q212]
 gi|254789873|sp|B6J031|TTCA_COXB2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|212010928|gb|ACJ18309.1| tRNA s2C32 biosynthesis protein [Coxiella burnetii CbuG_Q212]
          Length = 256

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 18/243 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ++V +SGG DS  LL  L+S+  +    K    A  +D   +     +   +
Sbjct: 22  RMINTGDRVMVCLSGGKDSYTLLSLLNSIRIE-GNYKFDIFAFVLD---QSQPGWDDSAL 77

Query: 74  SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                  +I++ +++                  +     R  +I  +A+    + I   H
Sbjct: 78  RGWLDDKKISYEILTRDTYSIVKEKIPAGKTYCSLCSRLRRGIIYRYAEEQGFSKIALGH 137

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD ++T+ M    +   +    S     +  +    + RP   C+  DI  + +++  
Sbjct: 138 HRDDLIQTLLMSVFYNGQIR----SMPPKLLSDNKRHVLIRPLAYCQERDIIKYAMEQQF 193

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
                P N     ++  +R+ V+ +         K   ++   ++N     +  +   + 
Sbjct: 194 PLI--PCNLCGS-QKNLMRQRVKRLISDLAKENPKVPSNILRALSNIKPSQLMDHELWNF 250

Query: 247 RSI 249
           R +
Sbjct: 251 REL 253


>gi|281337548|gb|EFB13132.1| hypothetical protein PANDA_017848 [Ailuropoda melanoleuca]
          Length = 307

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 65/225 (28%), Gaps = 28/225 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------- 65
           R L   A + V  SGG DS  L   L  +        +    ++VD  +           
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRELTPRLG---VSLRLVAVDEGIGGYRDAALAAG 102

Query: 66  ----------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
                     +       S    R            +             R   + E A+
Sbjct: 103 GGRRRAGTSRSPSWPTQTSSGAGRW------TPTAGTGRSRACCTFCGVLRRRALEEGAR 156

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            + AT I+T H  DD  ETV M   R  A +     G+         L   RP     ++
Sbjct: 157 LVGATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSRGEGGA-LPRCRPLQLASQK 215

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220
           ++  +   R + +  +         R   R  ++ ++      + 
Sbjct: 216 EVVLYAHFRRLDYFSEECVYAPEAFRGHARHLLKLLEAARPAQQQ 260


>gi|84685373|ref|ZP_01013271.1| hypothetical protein 1099457000258_RB2654_10908 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666530|gb|EAQ13002.1| hypothetical protein RB2654_10908 [Rhodobacterales bacterium
           HTCC2654]
          Length = 287

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 72/220 (32%), Gaps = 16/220 (7%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
                   LV +SGG DS  +L AL+ +   R    ++  A ++D   +         + 
Sbjct: 49  QAKPGQKWLVCLSGGKDSYTMLAALYEM-KWRGLLPVEILACNLD---QGQPGFPATVLP 104

Query: 75  DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +     ++ H +                    A     R   +   A+      ++  H 
Sbjct: 105 EFLEDRQVPHRIEYEDTYSIVMGKVPEGRTFCALCSRLRRGNLYRIAREEGCNAVVLGHH 164

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD LET +M         G   +     +  + +L++ RP       D   F       
Sbjct: 165 RDDILETFFMNLFHG----GRLATMPPKLVNEEGDLFVFRPLAHVAEADCEKFSRDMGYP 220

Query: 188 WC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
               D   + D  +R +V++ +   + ++   +   F+ L
Sbjct: 221 IIPCDLCGSQDGLQRQQVKQILDGWEKNSPGRRQVMFRAL 260


>gi|256829264|ref|YP_003157992.1| PP-loop domain-containing protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256578440|gb|ACU89576.1| PP-loop domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 312

 Score = 80.7 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 26/184 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           +   IL+A+SGG DS+ L   L  +             + +D  + E++     Y    C
Sbjct: 46  FDDRILIAISGGKDSLALAWQLKDL-------GYNIEGLHIDLGIPESSPIARSYAERFC 98

Query: 78  ------------SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                       ++L +A   V  +  +P   +       RY L ++ A+    T++ T 
Sbjct: 99  AMGEIPLHVIETAKLGLAMCDVKRRVKRPICSVCGQ--TKRY-LFNKFAQENGFTVLATG 155

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQR 184
           H  DD+   ++    R        LS     +  +       +P  R    +  +     
Sbjct: 156 HNLDDETSRLFANVMR---WDVEFLSDQGPVMPAEKGFAKKVKPLFRLTEFETANLCFLA 212

Query: 185 NISW 188
            I +
Sbjct: 213 GIDY 216


>gi|308799667|ref|XP_003074614.1| unnamed protein product [Ostreococcus tauri]
 gi|116000785|emb|CAL50465.1| unnamed protein product [Ostreococcus tauri]
          Length = 1183

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 78/245 (31%), Gaps = 40/245 (16%)

Query: 7    ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            E+++ F   +     +L+ +SGG DS+ +L  L S+      G    +  +VD       
Sbjct: 856  EAIQDF-EMIQPGDRVLLGLSGGKDSLAMLHILMSIKQRLPPGTFTLACATVDPGT---- 910

Query: 67   KDEVRY----VSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKT 116
                 +    +      L I +  +        +       + A     +   +    + 
Sbjct: 911  ---EAFNPRPLIPYVESLGIEYHYLEEEIMAMAEAHMNGDSICAFCARMKRGALYSCCRK 967

Query: 117  INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRC--- 172
                 ++ A   DD +E+  M +  +     M  S + D  +    + WI+     C   
Sbjct: 968  YGYNKLVLAQHLDDCVESFLMSTMYNGRNPTMKASYLIDEAISSRTSGWINENCPACFEA 1027

Query: 173  --RREDIRSF-------------LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217
               R  I+                ++  ++   DPS  D       +R  +   + +   
Sbjct: 1028 PKERNHIKKLLAREESVFPSLYSCMKNALTPLFDPSAQDLL---SMIREAIEARNANKQR 1084

Query: 218  LKMKK 222
             K ++
Sbjct: 1085 AKSQR 1089


>gi|297619559|ref|YP_003707664.1| PP-loop domain-containing protein [Methanococcus voltae A3]
 gi|297378536|gb|ADI36691.1| PP-loop domain protein [Methanococcus voltae A3]
          Length = 318

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 20/182 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V +SGG DS+ +   L+     +     K   I V+  +     D +      C +  
Sbjct: 59  IAVGISGGKDSLVMAYVLNEFF--KQIPNSKIIGIMVNEGIEGFRNDGIEKGIKFCEKFG 116

Query: 82  IAHSVVSW---------------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           I + + ++               K         +     R  +++  A       +   H
Sbjct: 117 IEYHIATFSEYIGANLDEIVNIAKEKNMTMNPCSFCGVIRRKILNRVAIEKKCDYLAIGH 176

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  + V M       +K   L+ +  +   D  +   +P  +    +++ F     +
Sbjct: 177 NLDDISQAVMMNYIEGDIKK---LAILGKSSNSDKFVKRIKPLSKIPENEVKLFADILKM 233

Query: 187 SW 188
            +
Sbjct: 234 DY 235


>gi|255527644|ref|ZP_05394504.1| TilS [Clostridium carboxidivorans P7]
 gi|255508657|gb|EET85037.1| TilS [Clostridium carboxidivorans P7]
          Length = 327

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R     G GL G+        N++  RP +   R +I  +  + NI+   D +N +
Sbjct: 1   MRIMR-----GTGLEGLVGIKAVRDNIF-VRPLIDVTRHEIEEYCCKENINPRIDKTNLE 54

Query: 197 DRFERVRVRRFVRDIDLHA----LYLKMKKFQDLRVKVNNAVAMLIPKYLTVH---MRSI 249
             + R +VR  +           +   + +  D     N  +  +  +    +       
Sbjct: 55  TIYSRNKVRLELIPYIQENFNKDIIKVLNRLSDTIKIDNEYLETVAKEKFKKYCDIQGEK 114

Query: 250 IAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFL--KSGKRGCVSIGRV 307
           + IS++    +  ++  ++R +     G ++      +  ++      +GK   +    V
Sbjct: 115 VIISKEAFLENEAIITRIIRKALYEVTGNLNNFEKIHIYDIINIQSRSTGKNIDLPNHVV 174

Query: 308 VIDRRANFLWITRAVRNLPTL 328
           V ++  + ++I + V+    +
Sbjct: 175 VSNKYGD-IYILKKVKENKEV 194


>gi|209876207|ref|XP_002139546.1| PP-loop family protein [Cryptosporidium muris RN66]
 gi|209555152|gb|EEA05197.1| PP-loop family protein [Cryptosporidium muris RN66]
          Length = 1229

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 90/237 (37%), Gaps = 24/237 (10%)

Query: 8    SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVDHCLRETA 66
            +++ F   +     ILV VSGG DS+   +    +L  R    K   +A +VD       
Sbjct: 987  AIKTF-NMIKQGDRILVGVSGGKDSLT--MLHTLLLLQRIAPVKFSIAAATVD----PQT 1039

Query: 67   KD-EVRYVSDVCSRLRIAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKT 116
            K+ +V  +    + L I +  +S+         K  + +    +     +  ++    K 
Sbjct: 1040 KEMDVTSLKPYMNSLGIEYHFLSYPIVQLASKLKYKQQKLSYCSFCARMKRGILYSCMKK 1099

Query: 117  INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             +  ++      DD  E+  +    +        +   + ++   N+ + RP + CR +D
Sbjct: 1100 YDYNVLALGQHTDDICESFLLSIIHNGKLN----TMKANYLVPKYNIRVIRPMIYCREKD 1155

Query: 177  IRSFLLQRNISWCE--DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
            +  F L+  +       P+      ER ++++ +   ++    +     + L+  ++
Sbjct: 1156 LEKFALRWKLPVITENCPACFSQAKERRKIKQLLSQEEIDHPNVHSSIIKALQPLIS 1212


>gi|251780998|ref|ZP_04823918.1| PP-loop domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085313|gb|EES51203.1| PP-loop domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 288

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 21/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +++++ +   +     I VA+SGG DS+ L+  L   L        +   I++D    
Sbjct: 39  KFVKAIKNY-ELIQEGDKIGVAISGGKDSL-LMAKLFQELQKHGQMNFEVEFIAMDPGYH 96

Query: 64  ETAKDEVRYVSDV----CSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114
                   ++  +    C  L I  ++         +   +          R   +   A
Sbjct: 97  P-------HIRQLLLDNCEYLNIPITIYESGIFDVVDKMAKDYPCYLCARMRRGSLYNKA 149

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    +   H ++D +ET  +        K M L  +        NL + RP      
Sbjct: 150 QELGCNKLALGHHYNDVIETTLLNILYGGNFKTM-LPKLKSANF--ENLELIRPMYYIEE 206

Query: 175 EDIRSFLLQRNISW 188
           E I+ F+    I+ 
Sbjct: 207 EYIKKFIKSTGITP 220


>gi|118431097|ref|NP_147309.2| hypothetical protein APE_0537.1 [Aeropyrum pernix K1]
 gi|116062423|dbj|BAA79504.2| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 338

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 26/228 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRL 80
           +L+ +SGG DS  LL AL  ++     G  +  A+S+   +    ++ ++  +  V +  
Sbjct: 54  VLLGLSGGKDSYVLLDALSEIV-----GPSRLVAVSIVEGIPGYNREGDIEKIRRVAAAR 108

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA---------------RYALISEHAKTINATLIMTA 125
            +   V S +     +     +R                 R  +++ +A+   A  + TA
Sbjct: 109 GVDVIVTSIREYVGASLYEIYSRARGRGAGHAACTYCGISRRRILALYARLYGAHKVATA 168

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD+ +T  +   R      +    +  +   DL   I +P  +    +  S+++   
Sbjct: 169 HNLDDEAQTAIVNFLRGDWVGMLKTHPLYRSGGEDLVPRI-KPLRKVYEWETASYVVLHR 227

Query: 186 ISWCEDPS---NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
               E      N +    R RVR  +R ++  +    ++  + L  ++
Sbjct: 228 YPIQEAECPFINMNPT-LRARVRTALRVLEERSPGTLLRMMERLDEEL 274


>gi|168334209|ref|ZP_02692412.1| PP-loop domain protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 275

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 19/225 (8%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L+     I V +SGG DS  L   +  +L        +   + +D      +      +
Sbjct: 35  QLIKDGDKIAVCISGGKDSFVLAKCMQELLR-HGRNNFELVFLVMD---PGYSNQNRELI 90

Query: 74  SDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            +    + I   +    +    +             R   + + A+ +    I   H FD
Sbjct: 91  IENAKLMGIPIQMFESPIFTVVADVGGNPCYLCARMRRGYLYKEAQQLGCNKIALGHHFD 150

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET  M        K M       ++ +   + + RP    + +DI +F     + + 
Sbjct: 151 DVIETTLMNMLYSGEIKTM--MPKLKSLNFKP-MELIRPLYMVKEKDILAFKDYNKLMFL 207

Query: 190 EDPS-------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +          N +   +R  +++ +++      ++    FQ + 
Sbjct: 208 QCACLMTEKIANDNVDSKRQEMKKLIQNFRKINPHIDRNIFQSMH 252


>gi|225850787|ref|YP_002731021.1| PP-loop domain protein [Persephonella marina EX-H1]
 gi|225644978|gb|ACO03164.1| PP-loop domain protein [Persephonella marina EX-H1]
          Length = 315

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 22/207 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E      R       ILVAVSGG DS+ L   L  +  +     I      +D  
Sbjct: 42  FEKRVEKTIKEFRMFSKKDRILVAVSGGKDSLTLWNVLTKLGYEADGFYIDLG---ID-Q 97

Query: 62  LRETAKD-EVRYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISE 112
             E +K+  +R+   +   L I           V+    +KP       A   RY  ++ 
Sbjct: 98  YSEDSKNLSLRFSERIGRPLHIISLKDEIAPIPVIDKSTNKPACSACGTA--KRY-YMNR 154

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFL 170
           +AK +   +I T H  DD++  V   +   +  K +        +L +   +I   +P  
Sbjct: 155 YAKQLGYNIIATGHNLDDEV-AVLFGNTLHWDIKYL---KKQYPVLREEGGFIRKVKPLC 210

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDD 197
           +   ++   +    +I + E      +
Sbjct: 211 KITEKESAMYAFFNDIEYIEYECPFSE 237


>gi|302344685|ref|YP_003809214.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075]
 gi|301641298|gb|ADK86620.1| PP-loop domain protein [Desulfarculus baarsii DSM 2075]
          Length = 324

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 24/187 (12%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVRYV 73
           L     +LVAVSGG DS+ L           +  ++ +    V  CL   E ++  ++  
Sbjct: 49  LRPGQEVLVAVSGGKDSLAL---------WLTLEELGYRTAGVHLCLEMGEFSEASLQSC 99

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------LISEHAKTINATLI 122
             + +RL       S         +       R              ++     +    +
Sbjct: 100 RQMAARLGRPLHEASLGQLTDGLSMQEIVWATRRQFCSVCGTFKRHFLNRLCLELGFDTV 159

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPFLRCRREDIRSF 180
            T H  DD+   +      ++ +    +  + ++            +P  R    +IR+F
Sbjct: 160 ATGHHLDDEAGRLLGNLIHNHLDYLQAMWPVLESGGDAATGFARKVKPLCRLEGAEIRAF 219

Query: 181 LLQRNIS 187
                + 
Sbjct: 220 AQVHELP 226


>gi|188588612|ref|YP_001920117.1| PP-loop family protein [Clostridium botulinum E3 str. Alaska E43]
 gi|188498893|gb|ACD52029.1| PP-loop family protein [Clostridium botulinum E3 str. Alaska E43]
          Length = 288

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 21/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +++++ +   +     I VA+SGG DS+ L+  L   L        +   I++D    
Sbjct: 39  KFVKAIKNY-ELIQEGDKIGVAISGGKDSL-LMAKLFQELQKHGQMNFEVEFIAMDPGYH 96

Query: 64  ETAKDEVRYVSDV----CSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114
                   ++  +    C  L I  ++         +   +          R   +   A
Sbjct: 97  P-------HIRQLLLDNCEYLNIPITIYESGIFDVVDKMAKDYPCYLCARMRRGSLYNKA 149

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    +   H ++D +ET  +        K M L  +        NL + RP      
Sbjct: 150 QELGCNKLALGHHYNDVIETTLLNILYGGNFKTM-LPKLKSANF--ENLELIRPMYYIEE 206

Query: 175 EDIRSFLLQRNISW 188
           E I+ F+    I+ 
Sbjct: 207 EYIKKFIKSTGIAP 220


>gi|306820973|ref|ZP_07454593.1| PP-loop family protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551087|gb|EFM39058.1| PP-loop family protein [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 285

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 24/179 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVD---HC-LRETAKDEVRY 72
              I VA+SGG DSM +      +   +  G + F A  + +D   H  +R       + 
Sbjct: 52  GDRIAVAISGGKDSMLMAKLFQEL---KEHGNVNFDAEFVVMDPGYHKDIR-------KL 101

Query: 73  VSDVCSRLRIAHSVVSWKN---SKPQTG--LMAAAREARYALISEHAKTINATLIMTAHT 127
           + + C  L I   +        +    G        + R   +   A+ +    +   H 
Sbjct: 102 LEENCKYLEIPIKIFDTDVFAIADKIAGDYPCYMCAKMRRGALYNIAEQLKCNKLALGHH 161

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           F+D +ET  +            L  +        ++ + RP      + I  +     +
Sbjct: 162 FNDVIETTMLNVL-YAGSYKTMLPKLKSKNF--DSIELIRPLFLIEEKSIIKYTQNAGL 217


>gi|319945211|ref|ZP_08019473.1| PP-loop family protein [Lautropia mirabilis ATCC 51599]
 gi|319741781|gb|EFV94206.1| PP-loop family protein [Lautropia mirabilis ATCC 51599]
          Length = 379

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 19/186 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               ++V +SGG DS  +L  L  +   R+       A+++D   +     +V    +  
Sbjct: 144 PNDRVMVCLSGGKDSFAMLDILLGLQK-RAPVPFSIVAVNLD-QRQPGFPADVLP--NYL 199

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            +L + + + +                  +     R  ++   A  + AT I   H  DD
Sbjct: 200 QKLGVEYHIETEDTYSTVQRVIPDGKTKCSLCSRLRRGILYRVASELGATRIALGHHRDD 259

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            L T ++         G  L  M   ++ D     + RP      +D+  +   +N    
Sbjct: 260 ILATFFLNLF-----YGGQLKTMPAKLVSDDGRHVVIRPLAYVEEKDLIRWAEVKNFPII 314

Query: 190 EDPSNT 195
             P N 
Sbjct: 315 --PCNL 318


>gi|227500613|ref|ZP_03930662.1| PP-loop family ATPase [Anaerococcus tetradius ATCC 35098]
 gi|227217200|gb|EEI82544.1| PP-loop family ATPase [Anaerococcus tetradius ATCC 35098]
          Length = 269

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 25/242 (10%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCL 62
           I++++ F  SL+     + VA+SGG DS+ L   +  +       K+KF    +  D   
Sbjct: 23  IKAIKEF--SLINEGDKVAVAISGGKDSLILAKLIEEL---HKHSKVKFDVAYISMD--- 74

Query: 63  RETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------REARYALISEHAK 115
                 E    + +    L I  ++   +  +    +   A         R   +   AK
Sbjct: 75  -PGYDKENRELLEENIKYLNIDATIYDSEVFEVAETITKGAYPCYMCARMRRGFLYNKAK 133

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    +   H  +D +ET  M        K M              + + RP      +
Sbjct: 134 ELGCNKLALGHHMNDAIETTMMNVLYAGNFKTMKPKLRAQNF---EGMELIRPLYYLHED 190

Query: 176 DIRSFLLQRNISWCEDP---SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
           DI+ +     +         + + + + R +++  + D+      ++    +       +
Sbjct: 191 DIKRWRDYVGLKALNCACTVTKSSESYTRKKIKELIADLKKDNPEVEKSILRSAENVNCD 250

Query: 233 AV 234
            V
Sbjct: 251 MV 252


>gi|167534104|ref|XP_001748730.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772692|gb|EDQ86340.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1003

 Score = 80.3 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 16/186 (8%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFG--KIKFSAISVDHCLR 63
           ++++R F   L     +LV VSGG DS+ L+  +  +          I+  A +VD    
Sbjct: 749 LKAIRDF-DMLRDGDRVLVCVSGGKDSLSLVHVMKQLQYKLRGDGINIQLGAATVD---P 804

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------REARYALISEHAKTI 117
            T   +   +     +L + +             +   A         +   +   A+  
Sbjct: 805 GTEAFDPSPLQAYFQQLGMPYFYEEQCIMDDAMNIENLASICSFCARMKRGRLYACARRE 864

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
              ++M     DD  E++ M    +   +    +     ++ + +L ++RPF+  R +D+
Sbjct: 865 GYNVLMFGQHLDDMAESLMMSLFHNGYLR----TMKAHYVVAEGDLRMARPFVYVREKDL 920

Query: 178 RSFLLQ 183
           R F   
Sbjct: 921 RMFAEH 926


>gi|332297415|ref|YP_004439337.1| PP-loop domain protein [Treponema brennaborense DSM 12168]
 gi|332180518|gb|AEE16206.1| PP-loop domain protein [Treponema brennaborense DSM 12168]
          Length = 235

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 24/192 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+   F  R +     IL+  SGG DS  L+    +    +   +  F+A+ V     
Sbjct: 8   RIIDKAVFEYRMIEDGDRILIGASGGKDSTALVEYFAA-RKKQGRDRFDFTALHV----- 61

Query: 64  ETAKDEV----RYVSDVCSRLRIAHSVVSW-KNSKPQTGLMA---AAREARYALISEHAK 115
             + +      R + ++ ++  +    V+     + + G           R   ++ +A 
Sbjct: 62  --STEIAPAFDRRLLELFAQWNVFPETVNVGVLERLKPGRRMNCWWCSTQRRTELNAYAI 119

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDL-NLWISRPFLRCR 173
                 I   H  DD LET+ M +       G G LS M   + Y+   + + RP     
Sbjct: 120 AHGYNKIALGHHMDDILETLLMNAL------GKGELSTMPPRLQYEKYPVTVVRPLCFSD 173

Query: 174 REDIRSFLLQRN 185
            + I +   +R 
Sbjct: 174 VDTIVAHAAERG 185


>gi|332306563|ref|YP_004434414.1| PP-loop domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173892|gb|AEE23146.1| PP-loop domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 311

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +            A+++D   +        +V  +  
Sbjct: 49  GDKVMVCLSGGKDSYTMLDMLLHMQKSAPI-HFSIIAVNLD-QKQPG---FPEHVLPNYL 103

Query: 78  SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L + ++++                   +     R  ++  +A  +  T I   H  DD
Sbjct: 104 ENLGVDYAIIEEDTYSIVVDKVPEGKTTCSLCSRLRRGILYTNAIKMGVTKIALGHHRDD 163

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++        K    S        D    + RP   C  +DI  + +        
Sbjct: 164 MLETLFLNMFHTGRLK----SMPPKLTSDDGKNVVIRPLAYCSEQDIADYSIHMGFPII- 218

Query: 191 DPSNT 195
            P N 
Sbjct: 219 -PCNL 222


>gi|260494489|ref|ZP_05814619.1| PP family ATPase [Fusobacterium sp. 3_1_33]
 gi|260197651|gb|EEW95168.1| PP family ATPase [Fusobacterium sp. 3_1_33]
          Length = 277

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 73/190 (38%), Gaps = 16/190 (8%)

Query: 3   LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            + I++++ F   L+     I V VSGG DS+ L      +  DRS    +   IS++  
Sbjct: 36  RNFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 92

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKT 116
               A D  ++  ++   + I   +     W+ +  ++         + R  ++ +  + 
Sbjct: 93  F--EAIDVYKFKENLIE-MGIDCELFDANVWQIAFEESPENPCFLCAKMRRGVLYKKVEE 149

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    +   H FDD +ET  +         G   + +         + I RP    R +D
Sbjct: 150 LGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKD 205

Query: 177 IRSFLLQRNI 186
           I +F+    I
Sbjct: 206 IINFMKHNEI 215


>gi|269123504|ref|YP_003306081.1| PP-loop domain-containing protein [Streptobacillus moniliformis DSM
           12112]
 gi|268314830|gb|ACZ01204.1| PP-loop domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 286

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 59/172 (34%), Gaps = 13/172 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I VA+SGG DS+ LL  L   L   S  K +   I+++    +   D ++   ++   
Sbjct: 53  DKIAVAISGGKDSL-LLAKLFQELKRASKTKFELVFIAMNPGFNQRNLDNLKL--NL-EH 108

Query: 80  LRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
           L I   +             +        + R   +   A  +    +   H  DD +ET
Sbjct: 109 LNIPCHIYDDNIFDIAGKIAKDYPCYMCAKMRRGSLYSKATELGCNKLALGHHLDDVVET 168

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             M         G   + +      + ++ + RP      ++I  F+    I
Sbjct: 169 TLMSMF----YMGKFETMLPKLKSDNFDIELIRPLFYIEEKNIIKFVKNNGI 216


>gi|294785550|ref|ZP_06750838.1| ATPase of the PP family protein [Fusobacterium sp. 3_1_27]
 gi|294487264|gb|EFG34626.1| ATPase of the PP family protein [Fusobacterium sp. 3_1_27]
          Length = 277

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 20/192 (10%)

Query: 3   LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            + +++++ F   L+     I V VSGG DS+ L      +  DRS    +   IS++  
Sbjct: 36  RNFVKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 92

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHA 114
               A D  ++  ++   + I   +  +  +  Q     A         + R  ++ +  
Sbjct: 93  F--EAIDVDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPDSPCFLCAKMRRGVLYKKV 147

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    +   H FDD +ET  +         G   + +         + I RP    R 
Sbjct: 148 EELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVRE 203

Query: 175 EDIRSFLLQRNI 186
           +DI +F+   +I
Sbjct: 204 KDIINFMKYNDI 215


>gi|34762504|ref|ZP_00143502.1| ATPases of the PP superfamily [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|237741809|ref|ZP_04572290.1| PP family ATPase [Fusobacterium sp. 4_1_13]
 gi|27887837|gb|EAA24907.1| ATPases of the PP superfamily [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|229429457|gb|EEO39669.1| PP family ATPase [Fusobacterium sp. 4_1_13]
          Length = 277

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 20/192 (10%)

Query: 3   LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            + +++++ F   L+     I V VSGG DS+ L      +  DRS    +   IS++  
Sbjct: 36  RNFVKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPG 92

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHA 114
               A D  ++  ++   + I   +  +  +  Q     A         + R  ++ +  
Sbjct: 93  F--EAIDVDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPDSPCFLCAKMRRGVLYKKV 147

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    +   H FDD +ET  +         G   + +         + I RP    R 
Sbjct: 148 EELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVRE 203

Query: 175 EDIRSFLLQRNI 186
           +DI +F+   +I
Sbjct: 204 KDIINFMKYNDI 215


>gi|120554711|ref|YP_959062.1| PP-loop domain-containing protein [Marinobacter aquaeolei VT8]
 gi|205830601|sp|A1U1K6|TTCA_MARAV RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|120324560|gb|ABM18875.1| tRNA s(2)C-32 sulfurtransferase [Marinobacter aquaeolei VT8]
          Length = 302

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 19/178 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSRLRIAH 84
           +SGG DS  +L  L ++       + +  A+++D   +        +V  D    + I +
Sbjct: 56  LSGGKDSYAMLDILLNLQKSAPV-RFELIAVNLD-QKQPG---FPEHVLPDYLESMGIEY 110

Query: 85  SVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            ++                         R  ++   A+    T I   H  DD LET+++
Sbjct: 111 HIIEKDTYSIVKEKVPEGKTTCGLCSRLRRGILYNFAEEHGVTKIALGHHRDDLLETLFL 170

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
                   K M      D    D    + RP    R +DI  +   R       P N 
Sbjct: 171 NMFYGGKLKSMPPVLHSD----DGRNTVIRPLAYAREKDIARYASLREFPII--PCNL 222


>gi|237755420|ref|ZP_04584046.1| PP-loop domain protein [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692420|gb|EEP61402.1| PP-loop domain protein [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 304

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 90/243 (37%), Gaps = 28/243 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F + +E      +     + ILVAVSGG DS+ L  AL  +               ++  
Sbjct: 31  FDNRVEKTIKEFKMFDKNSKILVAVSGGKDSLSLWNALAKL-------GYNVDGFYINLG 83

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS------------KPQTGLMAAAREARYAL 109
           + + ++           ++    ++V  K+             +P   +       RY  
Sbjct: 84  IGDYSQKSKELALKFAKKIGKTLNIVELKDEIATIPEMKTYDNRPACSICGT--IKRY-F 140

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SR 167
           +++ AK +   +I T H  DD+   V   +  +++ + +        +L + N +I   +
Sbjct: 141 MNKKAKELGYNIIATGHNLDDEA-AVLFSNTLNWSIEYL---KRQYPVLKEENGFIRKVK 196

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P  +   ++   + +   I + E+          +  + F+  ++  +   K++ + +  
Sbjct: 197 PLCKISEKESAIYAILSGIEYIEEECPYSVGATSIDYKLFLSQLEEKSPGTKLRFYSEFL 256

Query: 228 VKV 230
            K+
Sbjct: 257 RKM 259


>gi|254303881|ref|ZP_04971239.1| possible PP-loop family ATPase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324073|gb|EDK89323.1| possible PP-loop family ATPase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 277

 Score = 80.0 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 16/189 (8%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + +++V+ F   L+     I V VSGG DS+ L      +  DRS    +   IS++   
Sbjct: 37  NFVKAVKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPGF 93

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQT--GLMAAAREARYALISEHAKTI 117
              A D  ++  ++   + I   +     W+ +  ++         + R  ++ +  + +
Sbjct: 94  --EAIDVDKFKENLIE-MGIDCELFDANVWQIAFEESPESPCFLCAKMRRGVLYKKVEEL 150

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H FDD +ET  +         G   + +         + I RP    R +DI
Sbjct: 151 GFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREKDI 206

Query: 178 RSFLLQRNI 186
            +F+   +I
Sbjct: 207 INFMKYNDI 215


>gi|260889780|ref|ZP_05901043.1| PP-loop family protein [Leptotrichia hofstadii F0254]
 gi|260860386|gb|EEX74886.1| PP-loop family protein [Leptotrichia hofstadii F0254]
          Length = 310

 Score = 80.0 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 19/186 (10%)

Query: 12  FVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           F+R+L           I VA+SGG DS+ LL  L   L   S        IS++      
Sbjct: 66  FIRALKEFEMVKDGDRIAVAISGGKDSL-LLSKLFQELKRASRTNFDLVFISMNPGFNP- 123

Query: 66  AKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
               +  +      L I   +             +        + R   +   A ++   
Sbjct: 124 --ANLNNLKKNLEHLNIPCEIYNDNIFEIAEKIAKDYPCYMCAKMRRGSLYTKAASLGCN 181

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +   H FDD +ET  M         G   + +      +  + + RP      + I  +
Sbjct: 182 KLALGHHFDDVIETTLMSMF----YMGKFETMLPKLKSDNFEIELIRPLFYVEEKAIIKW 237

Query: 181 LLQRNI 186
           +    I
Sbjct: 238 VRNNGI 243


>gi|326795425|ref|YP_004313245.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Marinomonas
           mediterranea MMB-1]
 gi|326546189|gb|ADZ91409.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Marinomonas
           mediterranea MMB-1]
          Length = 278

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 71/191 (37%), Gaps = 31/191 (16%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS  +L  L ++ +      I+F  ++V+          H L      
Sbjct: 37  GDKVMVCLSGGKDSYTMLEILLNLQAS---APIEFEIVAVNLDQKQPGFPEHIL------ 87

Query: 69  EVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
             +Y+ D+     I     +S+V     + +T         R   +   A+ I AT I  
Sbjct: 88  -PKYLEDIGVNFHILERDTYSIVKEVVPEGKT-TCGLCSRLRRGSLYGFAEEIGATKIAL 145

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD LET+++        K    S     +  D    + RP   C+ EDI  F   +
Sbjct: 146 GHHRDDILETLFLNMFFGGKLK----SMPPKLLSDDGKHVVIRPLAYCKEEDIEKFADYK 201

Query: 185 NISWCEDPSNT 195
           +      P N 
Sbjct: 202 SFPII--PCNL 210


>gi|261403374|ref|YP_003247598.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
 gi|261370367|gb|ACX73116.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
          Length = 304

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 19/183 (10%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     ILVAVSGG D       L  +               ++  ++  + + +R V
Sbjct: 43  KMLNKDEKILVAVSGGKDGHVAAWILKKL-------GYNIELFHINLGIKGFSDESLRAV 95

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE--------ARYALISEHAKTINATLIMTA 125
             +  RL     VV  K    +T +     +         RY L+++        +I+T 
Sbjct: 96  KALAERLNTPLHVVDLKEITGKT-IEDIRGKKCSICGITKRY-LMNKFGYERGFDVIITG 153

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD++ +  + +  ++  + +          +D  L   + F       I  +     
Sbjct: 154 HNLDDEI-SFILNNVLNWNIRYLA-KHEPVLPAHDKFLKKVKIFFEIDEYLILKYAEAEE 211

Query: 186 ISW 188
           I +
Sbjct: 212 IPF 214


>gi|307945599|ref|ZP_07660935.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Roseibium sp.
           TrichSKD4]
 gi|307771472|gb|EFO30697.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Roseibium sp.
           TrichSKD4]
          Length = 312

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 58/189 (30%), Gaps = 17/189 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R+   P   LV +SGG DS  LL  L  +   R    +   A ++D   +     +V   
Sbjct: 51  RAREKPVKWLVCLSGGKDSYALLAVLTEL-KWRGLLPVDILACNLD-QAQPGFPADVLP- 107

Query: 74  SDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                   + H ++                   +     R  ++   A+      ++  H
Sbjct: 108 -KFFEDNGVEHLIIREDTYSIVTDKIPAHRTYCSLCSRLRRGILYRVARENGCETVVLGH 166

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             +D LET +M         G   S     +  + +L + RP       DI  F      
Sbjct: 167 HREDILETFFMNLFHG----GRLASMPPKLVNDEGDLLVLRPLAYSAESDIAKFASGMEF 222

Query: 187 SWCEDPSNT 195
                P N 
Sbjct: 223 PII--PCNL 229


>gi|46198414|ref|YP_004081.1| veg136 protein [Thermus thermophilus HB27]
 gi|46196036|gb|AAS80454.1| veg136 protein [Thermus thermophilus HB27]
          Length = 321

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+   E      R L+    +LVAVSGG DS+ L   L  +        I+         
Sbjct: 30  FVKETERAIRRHRMLLPGERVLVAVSGGKDSLALWDVLSRLGYQAVGLHIEL-------G 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REA--------RYALI 110
           + E +K  +           +   VV  K +        A    R A        RY +I
Sbjct: 83  IGEYSKRSLEVTQAFARERGLELLVVDLKEAYGFGVPELARLSGRVACSACGLSKRY-II 141

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPF 169
           ++ A      ++ T H  DD+   ++         +   LS     +     L    +PF
Sbjct: 142 NQVAVEEGFRVVATGHNLDDEAAVLFGNLL---NPQEETLSRQGPVLPEKPGLAARVKPF 198

Query: 170 LRCRREDIRSFLLQRNISWCEDPS 193
            R    ++ S+ L R I +  +  
Sbjct: 199 YRFSEREVLSYTLLRGIRYLHEEC 222


>gi|108759455|ref|YP_634115.1| hypothetical protein MXAN_5980 [Myxococcus xanthus DK 1622]
 gi|123247362|sp|Q1CZQ8|TTCA_MYXXD RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|108463335|gb|ABF88520.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 284

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 21/179 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--H-CLRETAKDEV 70
           R +     I+V VSGG DS  +L  L  +   R+  K +  A+++D  H       K E 
Sbjct: 27  RLIEDGDRIMVGVSGGKDSYTMLHLLRELQR-RAPVKFELLAVNLDQGHPGF-PADKLEA 84

Query: 71  RYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            +      R    +         +  + + P     +     R  ++   A  +  T I 
Sbjct: 85  YF-----QREGYPYKLLKEDTYSIVLEKTPPGKTQCSVCSRMRRGILYTAAVELGCTKIA 139

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             H  DD + T+ +         G   +        D    + RP      +DI  F  
Sbjct: 140 LGHHRDDLIHTLLLNLF----FAGSIKAMPPLLRSDDGRNVVIRPLCYAPEKDIAKFAE 194


>gi|74318526|ref|YP_316266.1| putative cell cycle control ATPase [Thiobacillus denitrificans ATCC
           25259]
 gi|74058021|gb|AAZ98461.1| putative cell cycle control ATPase [Thiobacillus denitrificans ATCC
           25259]
          Length = 251

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 18/185 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRY 72
           R +     IL+ +SGG D    L+     L  ++  K +  A +VD      +   +   
Sbjct: 28  RMIRDGDRILLGLSGGKD-SLSLLHALHHLQQKAPVKFELLACTVD----PQSDQFDPSP 82

Query: 73  VSDVCSRLRIAHSVVS--------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           ++   + L + + + S           +K      A     R  ++   A+     +I  
Sbjct: 83  LAPYMAALGVPYFLESQPILEDAQRTLTKDTDSYCAYCSRMRRGILYRVAREQRCNVIAL 142

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
           A   DD  ET+ M        + M    + D      +L I RP    R    R+F    
Sbjct: 143 AQHLDDLAETLMMSMFFGGKLRTMSPHYLND----AGDLRIIRPLAYARERQTRAFAADA 198

Query: 185 NISWC 189
            +   
Sbjct: 199 GLPVI 203


>gi|41615074|ref|NP_963572.1| hypothetical protein NEQ283 [Nanoarchaeum equitans Kin4-M]
 gi|40068798|gb|AAR39133.1| NEQ283 [Nanoarchaeum equitans Kin4-M]
          Length = 268

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 80/209 (38%), Gaps = 24/209 (11%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++++ +  SL  P   +L+A+SGG DS+ LL  L+++        I          +
Sbjct: 9   KVLDTIKRY--SLFSPNEKLLLAISGGKDSVTLLDILYNLNYKFDLYFIDL-------GI 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKT 116
           +  +    + V  +     +   +    +         +    A     +  L+++ A  
Sbjct: 60  KGFSDISEKIVESLSKEYGLNLYIDRVADYGITIKPIGKMPACAVCGIVKRYLMNKFAYE 119

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            + TLI TAH FDD +            E  + +    +   Y       +P    R ++
Sbjct: 120 KDYTLI-TAHNFDDIIAFALANLFSGNYEYLLKIRPKNER--YYKLAKKVKPLFFVREKE 176

Query: 177 IRSFLLQRNISWC--EDP---SNTDDRFE 200
              ++ ++N+ +   E P    NT DR++
Sbjct: 177 TLQYVKEKNLPYVNIECPLRRKNTQDRYK 205


>gi|326475107|gb|EGD99116.1| PP-loop ATPase superfamily protein [Trichophyton tonsurans CBS
           112818]
          Length = 402

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 12/181 (6%)

Query: 43  LSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS-----------WKN 91
           L++R    +    +S+D  ++    D +  V     +  +   +VS              
Sbjct: 49  LNERYNYGLDLVLLSIDEGIKGYRDDSLETVKRNAIQYEMPLEIVSYGELYGWTMDQVVA 108

Query: 92  SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
              + G        R   +   A  +N   ++T H  DD  ETV M   R    + +  S
Sbjct: 109 EIGKKGNCTYCGVFRRQALDRGAAKLNIKHVVTGHNADDVAETVMMNLLRGDLPR-LARS 167

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
               T     ++  S+P      ++I  +   + + +            R   R  ++D+
Sbjct: 168 TSIITGSAASDIKRSKPLKYAYEKEIVLYAHHKKLDYFSTECIYSPEAFRGSARTLIKDL 227

Query: 212 D 212
           +
Sbjct: 228 E 228


>gi|222109722|ref|YP_002551986.1| pp-loop domain-containing protein [Acidovorax ebreus TPSY]
 gi|254789874|sp|B9MCI6|TTCA_ACIET RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|221729166|gb|ACM31986.1| PP-loop domain protein [Acidovorax ebreus TPSY]
          Length = 317

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L  +   R+  K    A+++D   +        +V  D  
Sbjct: 57  GDKIMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPDYF 111

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +       V  +         +     R A++ + A  +  T +   H  DD
Sbjct: 112 KSIGVQYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADDLGCTKLALGHHRDD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            + T+ +        KGM        +  D    + RP      +D   +   +      
Sbjct: 172 IVATLMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTARWAQYQQFPII- 226

Query: 191 DPSNT 195
            P N 
Sbjct: 227 -PCNL 230


>gi|47199436|emb|CAF87748.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 286

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 56/169 (33%), Gaps = 12/169 (7%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG D   L   +  +L++R    +    +SVD  +     D +  V     +  
Sbjct: 53  VGIAASGGKDFTVLAHVMK-LLNERYNYGLTLMLLSVDEGITGYRDDSLETVKRNQQQYE 111

Query: 82  IAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   +VS++                          R   +   A  +    I T H  DD
Sbjct: 112 LPLKIVSYEELYGWTMDAIVRQVGLKNNCTFCGVFRRQALDRGAIMLKVDKICTGHNADD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ETV M   R     G+          Y+  + +   F +   +D+ S
Sbjct: 172 VAETVLMNVLRASEGDGVVPRCKPLKYAYEKEIVLYAYFKKTFLKDLES 220


>gi|319761311|ref|YP_004125248.1| pp-loop domain protein [Alicycliphilus denitrificans BC]
 gi|317115872|gb|ADU98360.1| PP-loop domain protein [Alicycliphilus denitrificans BC]
          Length = 310

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L  +   R+  K    A+++D   +        +V  D  
Sbjct: 50  GDRIMVCMSGGKDSYTLLDILRRLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPDYF 104

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +       V  +         +     R A++ + A  +  T +   H  DD
Sbjct: 105 KSIGVEYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADELRCTKLALGHHRDD 164

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            + T+ +        KGM        +  D    + RP      +D   +   +      
Sbjct: 165 IVATLMLNMFYGGRMKGM----PPKLVSDDGRHVVIRPLCYVPEKDTARWAQYQQFPII- 219

Query: 191 DPSNT 195
            P N 
Sbjct: 220 -PCNL 223


>gi|121592925|ref|YP_984821.1| C32 tRNA thiolase [Acidovorax sp. JS42]
 gi|205830365|sp|A1W3C0|TTCA_ACISJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|120605005|gb|ABM40745.1| tRNA s(2)C-32 sulfurtransferase [Acidovorax sp. JS42]
          Length = 317

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              I+V +SGG DS  LL  L  +   R+  K    A+++D   +        +V  D  
Sbjct: 57  GDKIMVCMSGGKDSYTLLDILRKLQK-RAPVKFDIVAVNLD-QKQPG---FPEHVLPDYF 111

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +       V  +         +     R A++ + A  +  T +   H  DD
Sbjct: 112 KSIGVQYHIENQDTYSVVKRVVPEGKTTCSLCSRLRRAILYKVADDLGCTKLALGHHRDD 171

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            + T+ +        KGM        +  D    + RP      +D   +   +      
Sbjct: 172 IVATLMLNMFYGGRMKGM----PPKLVSDDGKHVVIRPLCYVPEKDTARWAQYQQFPII- 226

Query: 191 DPSNT 195
            P N 
Sbjct: 227 -PCNL 230


>gi|55980446|ref|YP_143743.1| ATP pyrophosphatase [Thermus thermophilus HB8]
 gi|55771859|dbj|BAD70300.1| probable ATP pyrophosphatase, PP-loop superfamily [Thermus
           thermophilus HB8]
          Length = 320

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+   E      R L+    +LVAVSGG DS+ L   L  +        I+         
Sbjct: 30  FVKETERAIRRHRMLLPGERVLVAVSGGKDSLALWDVLSRLGYQAVGLHIEL-------G 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REA--------RYALI 110
           + E +K  +           +   VV  K +        A    R A        RY +I
Sbjct: 83  IGEYSKRSLEVTQAFARERGLELLVVDLKEAYGFGVPELARLSGRVACSACGLSKRY-II 141

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPF 169
           ++ A      ++ T H  DD+   ++         +   LS     +     L    +PF
Sbjct: 142 NQVAVEEGFRVVATGHNLDDEAAVLFGNLL---NPQEETLSRQGPVLPEKPGLAARVKPF 198

Query: 170 LRCRREDIRSFLLQRNISWCEDPS 193
            R    ++ S+ L R I +  +  
Sbjct: 199 YRFSEREVLSYTLLRGIRYLHEEC 222


>gi|262068052|ref|ZP_06027664.1| PP-loop family protein [Fusobacterium periodonticum ATCC 33693]
 gi|291378274|gb|EFE85792.1| PP-loop family protein [Fusobacterium periodonticum ATCC 33693]
          Length = 276

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 20/191 (10%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + I++++ F   L+     I V VSGG DS+ L      +  DRS    +   IS++   
Sbjct: 37  NFIKAIKEF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPGF 93

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAK 115
              A D  ++  ++   + I   +  +  +  Q     A         + R  ++ +  +
Sbjct: 94  --EALDVDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPDSPCFLCAKMRRGVLYKKVE 148

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    +   H FDD +ET  +         G   + +         + I RP    R +
Sbjct: 149 ELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREK 204

Query: 176 DIRSFLLQRNI 186
           DI +F+    I
Sbjct: 205 DIINFMKYNEI 215


>gi|262037772|ref|ZP_06011214.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia
           goodfellowii F0264]
 gi|261748244|gb|EEY35641.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Leptotrichia
           goodfellowii F0264]
          Length = 295

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 19/186 (10%)

Query: 12  FVRSLVY------PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           F+R L           I VA+SGG DS+ LL  L   L   S    +   IS++    E 
Sbjct: 53  FIRGLKEFEMVKDGDKIAVAISGGKDSL-LLSKLFQELKRASKTNFELVFISMNPGFNE- 110

Query: 66  AKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
               +  +      L I   +             +        + R   +   A +    
Sbjct: 111 --VNLTNLRKNLEHLEIPCEIYNDNIFEVAEKIAKDYPCYMCAKMRRGSLYTKAASYGCN 168

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +   H  DD +ET  M         G   + +      + ++ + RP      + I  +
Sbjct: 169 KLALGHHLDDVIETTLMSIF----YMGKFETMLPKLKADNFDIELIRPLFYVEEKSIIKW 224

Query: 181 LLQRNI 186
           +    I
Sbjct: 225 IRNNGI 230


>gi|237740722|ref|ZP_04571203.1| PP family ATPase [Fusobacterium sp. 2_1_31]
 gi|294782124|ref|ZP_06747450.1| ATPase of the PP family protein [Fusobacterium sp. 1_1_41FAA]
 gi|229422739|gb|EEO37786.1| PP family ATPase [Fusobacterium sp. 2_1_31]
 gi|294480765|gb|EFG28540.1| ATPase of the PP family protein [Fusobacterium sp. 1_1_41FAA]
          Length = 277

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 20/191 (10%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + I++++ F   L+     I V VSGG DS+ L      +  DRS    +   IS++   
Sbjct: 37  NFIKAIKEF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRS-KNFEVKFISMNPGF 93

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAK 115
              A D  ++  ++   + I   +  +  +  Q     A         + R  ++ +  +
Sbjct: 94  --EALDVDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPDSPCFLCAKMRRGVLYKKVE 148

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    +   H FDD +ET  +         G   + +         + I RP    R +
Sbjct: 149 ELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREK 204

Query: 176 DIRSFLLQRNI 186
           DI +F+    I
Sbjct: 205 DIINFMKYNEI 215


>gi|312134203|ref|YP_004001541.1| phosphoadenosine phosphosulfate reductase [Caldicellulosiruptor
           owensensis OL]
 gi|311774254|gb|ADQ03741.1| phosphoadenosine phosphosulfate reductase [Caldicellulosiruptor
           owensensis OL]
          Length = 303

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       ILV +SGG DSM L   L              + + ++  + + +    + V
Sbjct: 42  RMFDKKDKILVVISGGKDSMALWHILAK-------EGYNVTGMYINLGIGQYSDKSQQVV 94

Query: 74  SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123
                +  +   V   K              +    +     +  L ++ A     + + 
Sbjct: 95  ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSVCGSIKRYLFNKIAYDGGFSAVA 154

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+  T+       + E  +         ++   +   +P       +   ++L 
Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESIHPKLVKKVKPLYTLTERENLFYVLI 213

Query: 184 RNISWCEDPS 193
             I +  D  
Sbjct: 214 NKIEFLHDEC 223


>gi|66770486|ref|YP_245248.1| C32 tRNA thiolase [Xanthomonas campestris pv. campestris str. 8004]
 gi|81303567|sp|Q4UNZ5|TTCA_XANC8 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|66575818|gb|AAY51228.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 300

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 71/242 (29%), Gaps = 20/242 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L  +            A+++D   +     +V     
Sbjct: 46  IAPGDKVMVCLSGGKDSYTLLDMLLQLQRSAPVP-FTLVAVNLD-QKQPDFPADVLP--T 101

Query: 76  VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                ++   +       V  +       + +     R   +  +A+    T I   H  
Sbjct: 102 YLRAQQVPFDIIEQDTYSVVSRVIPQGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHHR 161

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNIS 187
           DD + T +M            L+ M   +  D     + RP    R  DI ++   R   
Sbjct: 162 DDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARQFP 216

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
               P N     +    R+ V  +       +  +   +   + +     +         
Sbjct: 217 II--PCNLCGS-QENLQRQQVGRMLQQWDREQPGRVDQIARALGDVRPEQLADRTLFDFP 273

Query: 248 SI 249
            +
Sbjct: 274 GL 275


>gi|15921747|ref|NP_377416.1| hypothetical protein ST1453 [Sulfolobus tokodaii str. 7]
 gi|15622534|dbj|BAB66525.1| 322aa long hypothetical veg136 protein [Sulfolobus tokodaii str. 7]
          Length = 322

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 71/214 (33%), Gaps = 28/214 (13%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVS 74
           L     IL+AVSGG DS  L   L S +                  +    + E V  + 
Sbjct: 44  LQKAKKILLAVSGGKDSFVLADTLASFIDHNKLIAYNIV-----EGIHGYNRKEQVEQLK 98

Query: 75  DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARYALISEHAKTINA 119
              + L I     S+K+S   T                        R  LI+   + +NA
Sbjct: 99  KFLTDLGIELIEDSFKDSVGYTLDEMVKSSMEKGLNVSACTFCGGFRRKLINNAGRMVNA 158

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--PFLRCRREDI 177
             + T H  DD+++ + +   R    +   L    D  L   + ++ R  P  +    + 
Sbjct: 159 DYVATGHNLDDEVQAIVINLIRGDLIR---LIRFGDKPLKLSSKFVLRVKPLRKIYEWET 215

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
             +   +  ++ E          R  +R  VR++
Sbjct: 216 TMYAYYKGYNFQEVECPY--ITTRPTLRAKVREL 247


>gi|150391073|ref|YP_001321122.1| PP-loop domain-containing protein [Alkaliphilus metalliredigens
           QYMF]
 gi|149950935|gb|ABR49463.1| PP-loop domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 287

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 12/173 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I +A+SGG DS+ L+  L   L        +   I +D    E+ K     + D C 
Sbjct: 53  GDKIAIAISGGKDSL-LMAKLFQELHRHGTANFQMEFIVMDPGYHESIK---ALLVDNCK 108

Query: 79  RLRIAHSVVSWKNSKPQTGLMAA-----AREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L I   +   +  +    +          + R   + + A+ +    +   H ++D +E
Sbjct: 109 HLEIPVHIFEARIFEVAEKMAKEYPCFMCAKMRRGALYQKAQELGCNKLALGHHYNDVIE 168

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T  +            L  +  T      + I RP      E I  F     I
Sbjct: 169 TTMLNLL-YTGNFKTMLPKLKSTNF--EGMEIIRPLYLIEEEAIIDFTESSGI 218


>gi|256546122|ref|ZP_05473475.1| PP-loop family protein [Anaerococcus vaginalis ATCC 51170]
 gi|256398239|gb|EEU11863.1| PP-loop family protein [Anaerococcus vaginalis ATCC 51170]
          Length = 270

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 71/216 (32%), Gaps = 16/216 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I++V+ +   +     +  A+SGG DS+ L   L   L   S    +   I +D    
Sbjct: 22  KFIKAVKKY-ELINEGDKVACAISGGKDSL-LTAKLVEELHKHSNVNFEVEYICMDPGYD 79

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----AREARYALISEHAKTIN 118
           +  +D    +      L I   +      +    +            R   +   AK + 
Sbjct: 80  KENRD---LLEKNLKYLNIPAKIFDSDVFEISEKISGEYPCYMCARMRRGFLYAKAKELG 136

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +   H  +D +ET  M        K M    M        ++ + RP      +D+ 
Sbjct: 137 CNKVALGHHMNDAIETTLMNVLYAGNYKTMKPKLMAQNF---DDMELIRPMYFIEEKDVI 193

Query: 179 SFLLQRNISWCEDP---SNTDDRFERVRVRRFVRDI 211
           ++     +S        +   + + R +++  + D+
Sbjct: 194 AWRDYVGLSALNCACTVTKKSESYTRKKIKNLIEDL 229


>gi|21233521|ref|NP_639438.1| hypothetical protein XCC4099 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|81792269|sp|Q8P3H2|TTCA_XANCP RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830643|sp|B0RYY8|TTCA_XANCB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|21115375|gb|AAM43320.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 300

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 72/242 (29%), Gaps = 20/242 (8%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L  +            A+++D   +     +V     
Sbjct: 46  IAPGDKVMVCLSGGKDSYTLLDMLLQLQRSAPVP-FTLVAVNLD-QKQPDFPADVLP--T 101

Query: 76  VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                ++   +       V  +       + +     R   +  +A+    T I   H  
Sbjct: 102 YLRAQQVPFDIIEQDTYSVVSRVIPQGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHHR 161

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNIS 187
           DD + T +M            L+ M   +  D     + RP    R  DI ++   R+  
Sbjct: 162 DDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARHFP 216

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
               P N     +    R+ V  +       +  +   +   + +     +         
Sbjct: 217 II--PCNLCGS-QENLQRQQVGRMLQQWDREQPGRVDQIARALGDVRPEQLADRTLFDFP 273

Query: 248 SI 249
            +
Sbjct: 274 GL 275


>gi|331083660|ref|ZP_08332771.1| hypothetical protein HMPREF0992_01695 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403871|gb|EGG83423.1| hypothetical protein HMPREF0992_01695 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 292

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 8/147 (5%)

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA-------LYL 218
            RP L  +R +I  +L  + ISW  D +N +  + R ++R  +  +           +  
Sbjct: 9   IRPLLFVKRAEIEKYLKGQGISWVTDSTNEETEYTRNKIRHQIIPVIEEINPQAVSCIGR 68

Query: 219 KMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQ 278
             +    +   +     +L  KY+         I+++  +    +  YL+          
Sbjct: 69  AAENMWKIEEYLQEQTDILYRKYVKKT-GDTFCIAKECFSEKEIMQSYLIMRVLEQASKG 127

Query: 279 ISLPGYRSMERVMLFLKSGKRGCVSIG 305
                   +E V    K      VS+ 
Sbjct: 128 KKNITATHIEAVRRLFKGRTGASVSLA 154


>gi|260577134|ref|ZP_05845111.1| PP-loop domain protein [Rhodobacter sp. SW2]
 gi|259020608|gb|EEW23927.1| PP-loop domain protein [Rhodobacter sp. SW2]
          Length = 287

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 15/173 (8%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                LV +SGG DS  LL  LH +   R    +   A ++D   +    + V    +  
Sbjct: 42  RGDRWLVCLSGGKDSYTLLAVLHEL-KWRGLLPVDLLACNLDQG-QPGFPETVLP--EFL 97

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +R+ +AH +       +            A     R   +   A+    + ++  H  DD
Sbjct: 98  TRMGVAHRIEYQDTYSIVMDKVPAGQTTCALCSRLRRGNLYRIAREEGCSTVVLGHHRDD 157

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            LET +M         G   +     +  + +L++ RP       D  +F   
Sbjct: 158 ILETFFMNLFHG----GRLATMPPRLLNEEGDLFVCRPLAMVAEADCDAFARA 206


>gi|319408558|emb|CBI82211.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 276

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/233 (20%), Positives = 76/233 (32%), Gaps = 44/233 (18%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58
            L  I         L      LVA+SGG DS        AL   L  R   +I+  A ++
Sbjct: 32  LLRHIRQAFDDFSMLSSGKKWLVALSGGKDS----YGLLALLLDLKWRGLLQIEILACNL 87

Query: 59  D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103
           D        H L            D  +  +I + +       V      P     +   
Sbjct: 88  DQGQPGFPKHILP-----------DYLNNYQIPYRIEYQDTYSVVTDKLTPTQTYCSLCS 136

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN- 162
             R   +   A+    + ++  H  DD LET +M            L+ M   ++ D   
Sbjct: 137 RLRRGHLYRIAREEGCSALVLGHHRDDVLETFFMNLFHGGR-----LAAMPGKLINDEGD 191

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDID 212
           L++ RP +    ED++ F           P N        +R  ++  + DI+
Sbjct: 192 LFVLRPLVYAAEEDMKKFSQAMQFPII--PCNLCGSQSGLQRNVIKEMLNDIE 242


>gi|254502065|ref|ZP_05114216.1| hypothetical protein SADFL11_2103 [Labrenzia alexandrii DFL-11]
 gi|222438136|gb|EEE44815.1| hypothetical protein SADFL11_2103 [Labrenzia alexandrii DFL-11]
          Length = 347

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 53/167 (31%), Gaps = 15/167 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             LV +SGG DS  LL  L  +   R    +   A ++D   +         +       
Sbjct: 91  KWLVCLSGGKDSYTLLAVLIEL-KWRGVLPVDLVACNLD---QAQPGFPPEILPKFFEDN 146

Query: 81  RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            I H +V                   +     R  ++   A+      I+  H  DD LE
Sbjct: 147 GIEHIIVREDTYSIVTDKIPEHRTYCSLCSRLRRGILYRVAREQGCEAIVLGHHRDDILE 206

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T +M         G   S     I  + +L + RP       DI+ F
Sbjct: 207 TFFMNLFHG----GRLASMPPKLINDEGDLLVLRPLAYAAERDIQKF 249


>gi|86133422|ref|ZP_01052004.1| PP-loop family protein [Polaribacter sp. MED152]
 gi|85820285|gb|EAQ41432.1| PP-loop family protein [Polaribacter sp. MED152]
          Length = 265

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 70/208 (33%), Gaps = 28/208 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS  LL  L               A+++D   +    +EV       S
Sbjct: 28  GDKIMVCLSGGKDSYTLLDLLLYFQKVAPI-NFDLIAVNLD-QKQPGFPEEVLP--TYLS 83

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            L++   ++     K             +     R   + E AK +    +   H  +D 
Sbjct: 84  NLKVDFKIIEKNTYKVVMDKTPEGKTTCSLCSRLRRGTLYEAAKDLGCNKLALGHHKNDI 143

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYD-----LNLWISRPFLRCRREDIRSFLLQRNI 186
           LET ++             SG  +T+         +L + RP   C   DI  F   +N 
Sbjct: 144 LETFFLNMF---------FSGKLETMPPKFKNDAGDLVVLRPLAFCNESDIEEFSNYKNY 194

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLH 214
                P N     +    R+ V+++  H
Sbjct: 195 PII--PCNLCGS-QENLQRKKVKEMIAH 219


>gi|330834635|ref|YP_004409363.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329566774|gb|AEB94879.1| PP-loop domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 321

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 81/246 (32%), Gaps = 31/246 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           +E V    + +     + VAVSGG DS  LL  L  +     F       I++D  +   
Sbjct: 38  VEKVIKEYKMISEKDVVAVAVSGGKDSTTLLHILKGLSERNGF---DLVGINIDLGIDNG 94

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AARE---------ARYALIS 111
            + +               + + V+  K         A   AR           RY ++ 
Sbjct: 95  TKYSALSTELAVKNFELTHVRYKVIELKREYGFGIDEAKLKARRPVCSTCGLVKRY-VLE 153

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--DTILYDLNLWI--SR 167
           E A+++ A ++ T H  +D      M            L  +     +    N +I   +
Sbjct: 154 EAAESVGANVLATGHNLND------MAVFVMSGYHTGDLQNLARLRAVSPAENGYIKKVK 207

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRF---ERVRVRRFVRDIDLHALYLKMKKFQ 224
           P      ++  ++ +   I +  D    +         ++RR + + +       ++  +
Sbjct: 208 PLFLTSEKETATYAIVNKIPFIMDSCPNNPSVGGPTSDKLRRLIENTEDEIPGFMVRLVE 267

Query: 225 DLRVKV 230
           +   K+
Sbjct: 268 NFENKI 273


>gi|222148435|ref|YP_002549392.1| C32 tRNA thiolase [Agrobacterium vitis S4]
 gi|221735423|gb|ACM36386.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 295

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 18/217 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
              L+ +SGG DS GLL  L  +   R    ++  A ++D   +       ++V  D   
Sbjct: 64  KRWLIGLSGGKDSYGLLALLMDL-KWRGLLPVELIACNLDQG-QPN---FPKHVLPDYLK 118

Query: 79  RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
            + + H +         K   P  G   +     R   +   A+      ++  H  +D 
Sbjct: 119 SIGMPHRIEYRDTYSIVKEKVPAGGTYCSLCSRLRRGNLYRIAREEGCDALVLGHHREDI 178

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190
           LET +M         G   +     +  + +L++ RP      +D+  F           
Sbjct: 179 LETFFMNFFHG----GRLAAMPAKLLNDEGDLFVLRPLAYAAEDDLAKFAAAMQFPIIPC 234

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           D   + D  +R  ++  +  I+      K    + L 
Sbjct: 235 DLCGSQDGLQRNAMKDMLAGIEAKMPGRKDAMLRALS 271


>gi|254429034|ref|ZP_05042741.1| PP-loop family [Alcanivorax sp. DG881]
 gi|196195203|gb|EDX90162.1| PP-loop family [Alcanivorax sp. DG881]
          Length = 297

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 82/239 (34%), Gaps = 20/239 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++        + F  ++V+   ++        + +   
Sbjct: 50  GDKVMVCLSGGKDSYTMLEILRNLQ---HSAPVNFELVAVN-MDQKQPGFPEHILPEYLE 105

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  +A+ ++                         R   +   A+ I A  I   H  DD 
Sbjct: 106 KEGVAYHILEKDTYSIVKEKVPEGKTTCGLCSRLRRGSLYGFAEEIGANKIALGHHRDDI 165

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCE 190
           +ET+++         G  +  M   +  D N   + RP   CR +DI  F   +      
Sbjct: 166 VETLFLNMF-----YGGKMKAMPPKLRSDDNRNVVIRPLAYCREKDIIEFSALKEYPII- 219

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            P N     ++   R+ ++D+       +  + +++   V N     +         ++
Sbjct: 220 -PCNLCGS-QKNLQRQVIKDMLQQWDKQQPGRIENIFAAVQNIAPSQLADTRLFDFENL 276


>gi|20093584|ref|NP_613431.1| ATPase [Methanopyrus kandleri AV19]
 gi|19886440|gb|AAM01361.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 263

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 66/192 (34%), Gaps = 19/192 (9%)

Query: 7   ESVRFFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-SVDHCL 62
           + ++  VR   +P   + ILVA+SGG DS  +   L  +     +         +VD   
Sbjct: 29  DKIKECVRRSGHPRPGSRILVAMSGGKDSFAVAFGLKRLRGGYGWEVEGAHVAPTVDGK- 87

Query: 63  RETAKDEVRYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
            + +  +V  V +    L I          V+  K       +  A R  R   + + A+
Sbjct: 88  -KISAWDV--VEEQAKILEIHAYLLEPESDVLELKEEMNARKVCYACRTLRRIELGQLAE 144

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 I   HT DD   TV +            L  +  T  +     + RP +RC   
Sbjct: 145 EKGFDYIALGHTLDDAAATVILSLLTGAER----LKLLWYTGTWRGGPRLIRPLVRCPEA 200

Query: 176 DIRSFLLQRNIS 187
             ++   +  + 
Sbjct: 201 VTKALAEELKVD 212


>gi|212703980|ref|ZP_03312108.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098]
 gi|212672593|gb|EEB33076.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098]
          Length = 354

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 38/200 (19%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE  + F R       ILVA+SGG DS+ L++       + S      + + +D  +   
Sbjct: 90  IEGQKLFTRD----ERILVALSGGKDSLALML-------ELSRQGYDVTGLHIDLGI-PE 137

Query: 66  AKDEVR-YVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAK 115
           +    R  V   C++  +   V         +     +    + +A  + +    ++ A 
Sbjct: 138 SSPVARGVVERFCAKHGLKLMVKELAAEGLAIPLVKERLNRPVCSACGKIKRHFFNKVAL 197

Query: 116 TINATLIMTAHTFDDQLETVYMRSQR-------DYAEKGMGLSGMCDTILYDLNLWISRP 168
                 + T H  DD++  ++  + R       D   +  G  G              +P
Sbjct: 198 DEGFDALATGHNLDDEVARLFSNTLRWDTAYLSDQGPRLDGEDGFARK---------VKP 248

Query: 169 FLRCRREDIRSFLLQRNISW 188
             R    +  ++     I  
Sbjct: 249 LWRLSEFETANYAFLMGIEH 268


>gi|256845151|ref|ZP_05550609.1| PP family ATPase [Fusobacterium sp. 3_1_36A2]
 gi|256718710|gb|EEU32265.1| PP family ATPase [Fusobacterium sp. 3_1_36A2]
          Length = 277

 Score = 78.8 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 73/192 (38%), Gaps = 20/192 (10%)

Query: 3   LSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            + +++++ F   L+     I V VSGG DS+ L      +  DR+    +   IS++  
Sbjct: 36  RNFVKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDRN-KNFEVKFISMNPG 92

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHA 114
               A D  ++  ++   + I   +  +  +  Q     A         + R  ++ +  
Sbjct: 93  F--EAIDIDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPNSPCFLCAKMRRGVLYKKV 147

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    +   H FDD +ET  +         G   + +         + I RP    R 
Sbjct: 148 EELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVRE 203

Query: 175 EDIRSFLLQRNI 186
           +DI +F+   +I
Sbjct: 204 KDIINFMKYNDI 215


>gi|300120077|emb|CBK19631.2| unnamed protein product [Blastocystis hominis]
          Length = 190

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           MR  R       GL+ M      D      RP L   +  + +   +RN+ +  DPSN D
Sbjct: 1   MRLFRGSGI--AGLACMKQIQTMDDGTRRIRPLLYQSKASLEATCKERNVPFVLDPSNLD 58

Query: 197 DRFERVRVRRFVRD------IDLHALYLKMKKFQDLR 227
             ++R R+R  V+       +    L   +  FQ +R
Sbjct: 59  LTYDRNRIRSGVQQLKSNGSLQGPMLLEAIAYFQSVR 95


>gi|297544017|ref|YP_003676319.1| PP-loop domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841792|gb|ADH60308.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 300

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 23/231 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  I   R F +       +LV VSGG DSM L   L               A+ ++  +
Sbjct: 35  LKNIRKNRMFEK----GEKVLVVVSGGKDSMALWDILVK-------EGYNVVAMYINLGI 83

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112
            E +      V        +   V   K              +    +     +  L ++
Sbjct: 84  GEYSNRSQEVVEKFAKENNLPLIVKDIKKEFGLDIYKLSKTLRRSPCSVCGSIKRYLFNK 143

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A     + + T H  DD+  T++     ++ E  +   G      +   +   +P    
Sbjct: 144 VAYDGGFSAVATGHNLDDEAATLFGNVL-NWEEGYLARQGPVLPQTHPKLIKKVKPLYTL 202

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
              +   ++L   I +  +         R  + + V +          ++F
Sbjct: 203 TERENMYYVLLNKIEFLHEECPHSVG-ARSILYKEVLNKLEEESPGTKQRF 252


>gi|251792546|ref|YP_003007272.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
 gi|247533939|gb|ACS97185.1| threonyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700]
          Length = 322

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 33/192 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS  LL  L ++  +     IKF  ++V+          H L      
Sbjct: 51  GDKVMVCLSGGKDSYTLLDILLNLQQN---APIKFDIVAVNLDQKQPGFPEHVL------ 101

Query: 69  EVRYVSDVCSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +    +I     + +V  K  + +T   +     R  ++   A  +  T I  
Sbjct: 102 -PNYLQSISVDYKIIEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGVTKIAL 159

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183
            H  DD L T+++         G  L  M   ++ D    I  RP   C+ +DI  + + 
Sbjct: 160 GHHRDDMLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVA 214

Query: 184 RNISWCEDPSNT 195
           +       P N 
Sbjct: 215 KAFPII--PCNL 224


>gi|257456412|ref|ZP_05621608.1| PP-loop domain protein [Treponema vincentii ATCC 35580]
 gi|257446072|gb|EEV21119.1| PP-loop domain protein [Treponema vincentii ATCC 35580]
          Length = 235

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 54/156 (34%), Gaps = 10/156 (6%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCLRETAKDEVRYVSD 75
               IL+A SGG DS  L     + L  R +   + +A+ +  D    E A +       
Sbjct: 22  AGDRILIAASGGKDSTALTEYFAARL-QRRYPVFEAAALHIATDIG-SEFAPELAERFKS 79

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
               L I    V  +    +          R   +S++A+      I   H  DD LETV
Sbjct: 80  WGISLHIKTISVLDRLKTGKKMNCWWCSSQRRLELSKYAQEHGFNKIALGHHLDDILETV 139

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFL 170
            M +          L+ M   + +D   L   RP  
Sbjct: 140 LMNALTKGE-----LAAMPPVLKFDKFPLTFIRPLC 170


>gi|118588580|ref|ZP_01545988.1| hypothetical protein SIAM614_17779 [Stappia aggregata IAM 12614]
 gi|118438566|gb|EAV45199.1| hypothetical protein SIAM614_17779 [Stappia aggregata IAM 12614]
          Length = 312

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 54/182 (29%), Gaps = 17/182 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             LV +SGG DS  LL  L  +   R    +   A ++D   +         +       
Sbjct: 57  KWLVCLSGGKDSYTLLAVLIEL-KWRGLLPVDLIACNLD---QAQPGFPTDILPKFFEDN 112

Query: 81  RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            I H +V                   +     R  ++   A+      I+  H  +D LE
Sbjct: 113 GIEHIIVREDTYSIVTDKIPEHRTYCSLCSRLRRGILYRIAREQGCEAIVLGHHREDILE 172

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           T +M         G   S     I  + +L + RP       DI  F           P 
Sbjct: 173 TFFMNLFHG----GRLASMPPKLINDEGDLLVLRPLAYSAESDIARFASGMQFPII--PC 226

Query: 194 NT 195
           N 
Sbjct: 227 NL 228


>gi|110834127|ref|YP_692986.1| hypothetical protein ABO_1266 [Alcanivorax borkumensis SK2]
 gi|123345558|sp|Q0VQ34|TTCA_ALCBS RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|110647238|emb|CAL16714.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 284

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 79/238 (33%), Gaps = 18/238 (7%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS  +L  L ++        + F  ++V+   ++        + +   
Sbjct: 37  GDKVMVCLSGGKDSYTMLEILRNLQ---HSAPVNFELVAVN-MDQKQPGFPEHILPEYLE 92

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +  +A+ ++                         R   +   A+ I A  I   H  DD 
Sbjct: 93  KEGVAYHILEKDTYSIVKEKVPEGKTTCGLCSRLRRGSLYGFAEEIGANKIALGHHRDDI 152

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET+++        K M           D    + RP   CR +DI  F   +       
Sbjct: 153 VETLFLNMFYGGKMKAM----PPKLRSDDSRNVVIRPLAYCREKDIIEFSALKEYPII-- 206

Query: 192 PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           P N     ++   R+ ++++       +  + +++   V N     +         ++
Sbjct: 207 PCNLCGS-QKNLQRQVIKEMLQQWDKQQPGRIENIFAAVQNIAPSQLADTRLFDFENL 263


>gi|42525970|ref|NP_971068.1| hypothetical protein TDE0454 [Treponema denticola ATCC 35405]
 gi|41816020|gb|AAS10949.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
          Length = 276

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 75/241 (31%), Gaps = 24/241 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+   F  + +     IL+A SGG DS  L     S+   R   + +  A+ +     
Sbjct: 49  RTIDRAVFDYKMIEEGDRILLAASGGKDSTALAEYF-SMRLKRPSPRFEVHAMHI----- 102

Query: 64  ETAKDEV-----RYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----AAREARYALISEHA 114
             A D         +        I  ++ +                     R   +++ A
Sbjct: 103 --ATDVAPPLSPDLIKMF-ENWNIPLTIKTVSVLGRLKPNEKMNCWWCSTQRRTELNKFA 159

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCR 173
                  I   H  DD LET+ M       EKG+ LS M   + ++   + + RP     
Sbjct: 160 MEEGFNKIALGHHLDDILETLLMN----SLEKGI-LSTMPPVLKFEKYPVTMIRPLCLAD 214

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
              I     Q          N  +   R   R  +  +   +  LK+  F  L+  +   
Sbjct: 215 LPMIIRHSEQAGYICSTCTCNFQENSARKTARSRLDRLTGGSYKLKINLFNSLKNILPEY 274

Query: 234 V 234
           +
Sbjct: 275 L 275


>gi|149925908|ref|ZP_01914171.1| hypothetical protein LMED105_02630 [Limnobacter sp. MED105]
 gi|149825196|gb|EDM84407.1| hypothetical protein LMED105_02630 [Limnobacter sp. MED105]
          Length = 290

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVSDVC 77
              ++V VSGG DS      L  +L  R    I F  ++V+    +    +EV    +  
Sbjct: 43  GDKVMVCVSGGKDS---YGLLDILLLLRQRAPINFDIVAVNLDQKQPGFPEEVLP--NYL 97

Query: 78  SRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + ++  +       +  +         +     R  ++   A  + AT +   H  DD
Sbjct: 98  RSINVSFHIEEQDTYSIVKRVIPEGKTTCSLCSRLRRGILYRVASELGATKVALGHHKDD 157

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC 189
            L+T+ +         G  + GM   ++ D     I RP   CR  D+  +  +++    
Sbjct: 158 ILQTLLLNLF-----YGGRMKGMPPKLVSDNGEHTIIRPLAYCRESDLARYAEEKSFPII 212

Query: 190 EDPSNT 195
             P N 
Sbjct: 213 --PCNL 216


>gi|109898381|ref|YP_661636.1| PP-loop superfamily ATPase [Pseudoalteromonas atlantica T6c]
 gi|123171263|sp|Q15U56|TTCA_PSEA6 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|109700662|gb|ABG40582.1| tRNA s(2)C-32 sulfurtransferase [Pseudoalteromonas atlantica T6c]
          Length = 318

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L  +        I FS I+V+  L +       +V  +  
Sbjct: 56  GDKVMVCLSGGKDSYTMLDMLLHMQKA---APISFSIIAVN--LDQKQPGFPEHVLPNYL 110

Query: 78  SRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L +  +++                   +     R  ++  +A  +  T I   H  DD
Sbjct: 111 EGLGVDFAIIEEDTYSIVVDKVPEGKTTCSLCSRLRRGILYSNAIKMGVTKIALGHHRDD 170

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++    +   K    S        D    + RP   C  +DI  + +        
Sbjct: 171 MLETLFLNMFHNGRLK----SMPPKLTSDDGRNVVIRPLAYCAEQDIADYSILSGFPII- 225

Query: 191 DPSNT 195
            P N 
Sbjct: 226 -PCNL 229


>gi|315231707|ref|YP_004072143.1| tRNA(U54)-2-thioribothymidine synthetase [Thermococcus barophilus
           MP]
 gi|315184735|gb|ADT84920.1| tRNA(U54)-2-thioribothymidine synthetase [Thermococcus barophilus
           MP]
          Length = 307

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 27/188 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     ILV VSGG DS  +   L  +             + ++  + E +     Y 
Sbjct: 42  KLLKRDERILVVVSGGKDSAVVSYVLKKL-------GYNIECLYINLGIGEYSAKSEEYA 94

Query: 74  SDVCSRLRIAHSVVSW-----------KNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              C  +     +V             K S+P           RY + ++ A      +I
Sbjct: 95  KKQCEMINAKLHIVRVRELLGAGIGELKTSRPTCSYCGI--TKRY-IFNKFAYDNGFDVI 151

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRREDIRSF 180
           +T H  DD+  +    +  ++  + +        +L     ++   +P       ++ ++
Sbjct: 152 VTGHNLDDEA-SFIFGNIMNWNTQYLA---KQGPLLPGEGKFVKKVKPLYEVTEREVVAY 207

Query: 181 LLQRNISW 188
            L   I +
Sbjct: 208 ALAVGIDY 215


>gi|261868040|ref|YP_003255962.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413372|gb|ACX82743.1| threonyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 280

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 39/195 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS  LL  L ++  +     IKF  ++V+          H L      
Sbjct: 50  GDKVMVCLSGGKDSYTLLDILLNLQQN---APIKFRIVAVNLDQKQPGFPEHILPG---- 102

Query: 69  EVRYVSDVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATL 121
                      + + + +V        K   P+     +     R  ++   A  + AT 
Sbjct: 103 -------YLQGIGVGYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATK 155

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSF 180
           I   H  DD L T+++         G  L  M   ++ D    I  RP   C+ +DI  +
Sbjct: 156 IALGHHRDDMLATLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKY 210

Query: 181 LLQRNISWCEDPSNT 195
            + +       P N 
Sbjct: 211 AIAKAFPII--PCNL 223


>gi|93005608|ref|YP_580045.1| PP-loop [Psychrobacter cryohalolentis K5]
 gi|122415717|sp|Q1QCP2|TTCA_PSYCK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|92393286|gb|ABE74561.1| PP-loop [Psychrobacter cryohalolentis K5]
          Length = 381

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 91/283 (32%), Gaps = 31/283 (10%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           ++R F  +++    ++ V VSGG DS      L  +L  +    I F  ++V+    +  
Sbjct: 83  AIRDF--NMIEDGDVVMVCVSGGKDS---YTLLDILLLLKRIAPIHFDIVAVNLDQKQPG 137

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTIN 118
             +EV       +   IAH ++                   +A    R   +   AK I 
Sbjct: 138 YPEEVLPA--YLNEQGIAHYILEKDTYSIVKSVVPEGKTYCSACSRLRRGSLYGFAKQIG 195

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           AT I   H  DD L T ++      A K    S     +  D    + RP      +DI 
Sbjct: 196 ATKIALGHHRDDMLATFFLNLFHGGALK----SMPPKLLSDDKQNMLIRPLAYVEEKDII 251

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +   +       P N          R  + D+        ++++ D   +   ++   +
Sbjct: 252 EYSNLKEFPII--PCNLCGSQT-NLQRAIINDM--------LREWDDAHPQRLASIFKAM 300

Query: 239 PKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281
                  +        + L++D      L        G   SL
Sbjct: 301 QNVAPSQLADRELFDFETLSLDRDDNERLFEGDNIQAGQIESL 343


>gi|187935286|ref|YP_001884957.1| PP-loop family protein [Clostridium botulinum B str. Eklund 17B]
 gi|187723439|gb|ACD24660.1| PP-loop family protein [Clostridium botulinum B str. Eklund 17B]
          Length = 288

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 21/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +++++ +   +     I VA+SGG DS+ L+  L   L        +   I++D    
Sbjct: 39  KFVKAIKNY-ELIQEGDKIGVAISGGKDSL-LMAKLFQELQKHGQMNFEVEFIAMDPGYH 96

Query: 64  ETAKDEVRYVSDV----CSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHA 114
                   ++  +    C  L I  ++         +   +          R   +   A
Sbjct: 97  P-------HIRQLLLDNCEYLNIPITIYESGIFDVVDKMAKDYPCYLCARMRRGSLYNKA 149

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + +    +   H ++D +ET  +        K M L  +        NL + RP      
Sbjct: 150 QELECNKLALGHHYNDVIETTLLNILYGGNFKTM-LPKLKSANF--ENLELIRPMYYIEE 206

Query: 175 EDIRSFLLQRNISW 188
           E I+ F+    I+ 
Sbjct: 207 EYIKKFIKSTGIAP 220


>gi|227486136|ref|ZP_03916452.1| PP-loop family ATPase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235900|gb|EEI85915.1| PP-loop family ATPase [Anaerococcus lactolyticus ATCC 51172]
          Length = 270

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 23/232 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-- 63
           I++++ F + +     + VA+SGG DS+ L   +  +      G + F        L   
Sbjct: 24  IKAIKEF-KLIEEGDRVGVAISGGKDSLILAKLIEEL---HKHGPVDFDVEY----LSMD 75

Query: 64  -ETAKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKT 116
               ++ +  +    + L+I   +   +                     R   +   AK 
Sbjct: 76  PGYDEENLELLKKNLAYLQIPGKIYDSRVFDISETLADGGNPCYLCARMRRGFLYAKAKE 135

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    +   H  +D +ET+ +        K M             ++ + RP    R ED
Sbjct: 136 LGCNKLALGHHLNDVIETIMINVLYAGNYKTMKPKLTAQNF---DDMLLIRPLYYLREED 192

Query: 177 IRSFLLQRNISWCEDP---SNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
           I  +     +   +     + + +   R +V+  + D+      ++M   + 
Sbjct: 193 IIRWRDFAELKALDCACTVTKSSESHTRKKVKDLIADLKKDNPNVEMSILRS 244


>gi|325475681|gb|EGC78857.1| hypothetical protein HMPREF9353_00109 [Treponema denticola F0402]
          Length = 235

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 75/241 (31%), Gaps = 24/241 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+   F  + +     IL+A SGG DS  L     S+   R   + +  A+ +     
Sbjct: 8   RTIDRAVFDYKMIEEGDRILLAASGGKDSTALAEYF-SMRLKRPSPRFEVHAMHI----- 61

Query: 64  ETAKDEV-----RYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----AAREARYALISEHA 114
             A D         +        I  ++ +                     R   +++ A
Sbjct: 62  --ATDVAPPLSPDLIKMF-ENWNIPLTIKTVSVLGRLKPNEKMNCWWCSTQRRTELNKFA 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCR 173
                  I   H  DD LET+ M       EKG+ LS M   + ++   + + RP     
Sbjct: 119 MEEGFNKIALGHHLDDILETLLMN----SLEKGI-LSTMPPVLKFEKYPVTMIRPLCLAD 173

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
              I     Q          N  +   R   R  +  +   +  LK+  F  L+  +   
Sbjct: 174 LPMIIRHSEQAGYICSTCTCNFQENSARKTARSRLDRLTGGSYKLKINLFNSLKNILPEY 233

Query: 234 V 234
           +
Sbjct: 234 L 234


>gi|327398487|ref|YP_004339356.1| PP-loop domain-containing protein [Hippea maritima DSM 10411]
 gi|327181116|gb|AEA33297.1| PP-loop domain protein [Hippea maritima DSM 10411]
          Length = 294

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 65/194 (33%), Gaps = 25/194 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++V+ F +       IL+AVSGG DSM L  AL  +           +A+ VD  +   +
Sbjct: 36  KAVKQF-KMFDKEDKILIAVSGGKDSMSLWSALLEL-------GYNTTALFVDLGIGGFS 87

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK----------PQTGLMAAAREARYALISEHAKT 116
           +     V     R      VV  K              +       R  RY   +     
Sbjct: 88  ELARSKVEAFSDRFDAPLRVVELKKEGIPIPEVVKKIKRPACAVCGRIKRY-YFNTEGLK 146

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SRPFLRCRR 174
               ++ T H  DD  ET   R   +     M        +L      +   +PF R   
Sbjct: 147 GGFDVLATGHNLDD--ETS--RLFSNVLHWKMEYLEDQSPVLPSEEGLLKKVKPFFRLTE 202

Query: 175 EDIRSFLLQRNISW 188
            +I ++   +NI +
Sbjct: 203 FEIAAYAFFKNIDY 216


>gi|188993699|ref|YP_001905709.1| putative PP-loop family ATPase [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735459|emb|CAP53674.1| putative PP-loop family ATPase [Xanthomonas campestris pv.
           campestris]
          Length = 439

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 19/188 (10%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS  LL  L  +            A+++D   +     +V     
Sbjct: 185 IAPGDKVMVCLSGGKDSYTLLDMLLQLQRSAPVP-FTLVAVNLD-QKQPDFPADVLP--T 240

Query: 76  VCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                ++   +       V  +       + +     R   +  +A+    T I   H  
Sbjct: 241 YLRAQQVPFDIIEQDTYSVVSRVIPQGKTMCSLCSRLRRGALYAYAQAHGVTKIALGHHR 300

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNIS 187
           DD + T +M            L+ M   +  D     + RP    R  DI ++   R+  
Sbjct: 301 DDIVATFFMNLFHHAR-----LAAMAPKLRSDDGAHVVIRPLAYVREADIAAYAQARHFP 355

Query: 188 WCEDPSNT 195
               P N 
Sbjct: 356 II--PCNL 361


>gi|110638235|ref|YP_678443.1| ATPase [Cytophaga hutchinsonii ATCC 33406]
 gi|123163527|sp|Q11U13|TTCA_CYTH3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|110280916|gb|ABG59102.1| conserved hypothetical protein; possible ATPase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 285

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 21/197 (10%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E+V  F   L+ P   I+V +SGG DS  +L       + R     +  A+++D   ++ 
Sbjct: 29  EAVEEF--DLIEPGDKIMVCLSGGKDSYTMLDMFIHAQTVRK--NFEIIAVNLD---QKQ 81

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTIN 118
                  + +  + L +   +V           +     + +     R   +   A+ + 
Sbjct: 82  PDYPEHILPEYLTHLGVNFKIVEKDTYSIVIDKTPAGKTMCSLCSRLRRGSLYATAEELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T I   H  +D LET ++         G   +        D    + RP + C+  +I 
Sbjct: 142 VTKIALGHHREDVLETFFLNLF----FSGKMEAMPAKYRTDDGKHVVIRPLVYCKENEIA 197

Query: 179 SFLLQRNISWCEDPSNT 195
            + + +       P N 
Sbjct: 198 EYSIYKKFPII--PCNL 212


>gi|284161871|ref|YP_003400494.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631]
 gi|284011868|gb|ADB57821.1| PP-loop domain protein [Archaeoglobus profundus DSM 5631]
          Length = 290

 Score = 78.0 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 92/240 (38%), Gaps = 27/240 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ILV VSGG DS  +  AL+ +               +D  +   +K+ ++ V +
Sbjct: 43  LKSSEKILVCVSGGKDSTAMAYALNEL-------DYNIELFHIDLGIGNYSKESLKAVEE 95

Query: 76  VCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +   L +  +VV  ++            + +A    +  +++  A+     +I TAHT +
Sbjct: 96  LAQTLNLNLNVVKLEDYGFTIDDVESKKVCSACGIVKRYIMNRFARERGFDVIATAHTCE 155

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW- 188
           D +            E    LS   D   +D  +  ++P      ++  + +L  N+ + 
Sbjct: 156 DIILFFIKNVLSGNVEYISKLSPRIDG--FDKLVAKAKPLFERTEKENATLVLTLNLPFT 213

Query: 189 -CEDPS--NT---DDRFE-----RVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
             E P   N    +  +E     R   + FVR I   A  +K ++++    K+   V+  
Sbjct: 214 PMECPHAPNDIWKEIIYEIEAKRRGFKQNFVRGIVKLAKSVKAEEWEVKHCKICGEVSNF 273


>gi|332024574|gb|EGI64772.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Acromyrmex echinatior]
          Length = 1426

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 72/207 (34%), Gaps = 25/207 (12%)

Query: 1    MFLSPIESVRFFVRSLVYPAHILVAVSG-GSDSMGLLIALHSVLSDRSFGKI--KFSAIS 57
            M+   +E+++ F   +     +LV +S  G DS+ LL  LH          I  +  A +
Sbjct: 1116 MWKPSVEAMQEF-DMIRDNDKVLVCLSAIGKDSLSLLHTLHQYRFYVRSKGIDFEIGAAT 1174

Query: 58   VDHCLRETAKDEVRYVSDVCSRLRIAHS------------VVSWKNSKPQTGLMAAAREA 105
            +D     T+  +   +      L I +             V +  ++   +G  +   ++
Sbjct: 1175 ID-----TSGSDPMELMSYLKTLEIPYFYKEQVTDSNSVNVDNPLDASIASGTCSFCDKS 1229

Query: 106  RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
                +   AK     ++      DD  E+  +        K    +      +   +L +
Sbjct: 1230 VRTQLYSLAKRNGYNVLALGQHLDDLAESFLISVLHGGVLK----TMKAHYYIRREDLRV 1285

Query: 166  SRPFLRCRREDIRSFLLQRNISWCEDP 192
             RPF+  R + +R F   + +    D 
Sbjct: 1286 IRPFIYVREKALRQFTESKKLPISRDS 1312


>gi|303326287|ref|ZP_07356730.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302864203|gb|EFL87134.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 301

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 24/192 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE  + F R       ILVA+SGG DS+ L++ L          +   + + +D  +  +
Sbjct: 38  IEGQKLFTRD----ERILVALSGGKDSLALMLELAR-------QEYNVTGLHIDLAIPGS 86

Query: 66  AKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKT 116
           +      V   C++  +   V         +     +    + +A  + +    ++ A  
Sbjct: 87  SAAARGVVERFCAKHGLKLLVKDMAAEGLPIPAVKERLHRPICSACGKIKRHFFNKVALD 146

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRRE 175
                + T H  DD+   ++  + R        LS     +  +       +P  R    
Sbjct: 147 EGFDALATGHNLDDEAARLFSNTLR---WDTAYLSDQGPLLPGEHGFARKVKPLWRLTEF 203

Query: 176 DIRSFLLQRNIS 187
           +  ++     I 
Sbjct: 204 ETANYAFLMGIE 215


>gi|320537144|ref|ZP_08037116.1| PP-loop family protein [Treponema phagedenis F0421]
 gi|320146017|gb|EFW37661.1| PP-loop family protein [Treponema phagedenis F0421]
          Length = 235

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 27/234 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F +  ++V  + + +     IL+  SGG DS  L     + L  R   +   SA+ +  
Sbjct: 6   LFRTIDKAVSDY-QMIKDGDRILIGASGGKDSTALAEYFAARLKRRD-AQFTVSAMHI-- 61

Query: 61  CLRETAKDEV-----RYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALIS 111
                   ++     + + ++  R  I   + +     +  +            R   ++
Sbjct: 62  ------ATDIGSPFNQNLVELFERWGIPLIIKTVSVLGRLKEGHRMNCWWCSSQRRTELN 115

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDL-NLWISRPF 169
             A       I   H  DD LET+ M +       G G LS M   + ++   + + RP 
Sbjct: 116 NFALKNGFNKIALGHHLDDILETLLMNAL------GKGILSTMPPVLQFEKYPITMIRPL 169

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
                  I      +N        N      R   R  +  +   +  LK+K F
Sbjct: 170 CLADIPMIVRHAQMQNYFSSTCTCNYQSNSTRKEARSRLDALTGGSYELKLKLF 223


>gi|19704203|ref|NP_603765.1| PP family ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328581|ref|ZP_06871098.1| PP-loop family protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|19714425|gb|AAL95064.1| ATPases of the PP superfamily [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296154180|gb|EFG94981.1| PP-loop family protein [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 277

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 73/191 (38%), Gaps = 20/191 (10%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + I++++ F   L+     I V VSGG DS+ L      +  D+S    +   IS++   
Sbjct: 37  NFIKAIKDF--DLIKDGDKIAVGVSGGKDSLLLCKLFQELKKDKS-KNFEVKFISMNPGF 93

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAK 115
              A D  ++  ++   + I   +  +  +  Q     A         + R  ++ +  +
Sbjct: 94  --EAIDIDKFKENLIE-MGIDCEL--FDANVWQIAFEEAPNNPCFLCAKMRRGVLYKKVE 148

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +    +   H FDD +ET  +         G   + +         + I RP    R +
Sbjct: 149 ELGFNKLALGHHFDDIVETTMINMF----FAGTVKTMLPKVPSTSGKMDIIRPLAYVREK 204

Query: 176 DIRSFLLQRNI 186
           DI +F+   +I
Sbjct: 205 DIINFMKYNDI 215


>gi|261402621|ref|YP_003246845.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
 gi|261369614|gb|ACX72363.1| PP-loop domain protein [Methanocaldococcus vulcanius M7]
          Length = 342

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 43/242 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRE--TAKDEVRYVSDV 76
           I+V +SGG DS+   + LH +   R    IK  A +VD     +R      + V+ +   
Sbjct: 81  IIVGLSGGKDSL---LLLHLLEPYRRKYGIKLIAATVDVNIGGIRPWKEDSEGVKLIKHH 137

Query: 77  CSRLRIAH-------------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--- 120
           C  L I H              ++S  +   +     +    +  L+S+  K I+     
Sbjct: 138 CEMLSIPHITLKSELDVVELSEILSKNSRGMEFSPCFSCSVIKRHLLSKLCKEISKRDNL 197

Query: 121 -----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--------LWISR 167
                 I   H  DD  +T+     +    K M      +    D            I R
Sbjct: 198 PYEKVKIAYGHNLDDNSDTILANMFKGERLKFMKPITKFNHSEVDYGTFKIPLEECTIIR 257

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR---VRRFVRDIDLHALYLKMKKFQ 224
           P L    +DI   L + N+S+ +D    +  + R R   VR+   +I L  +  ++   +
Sbjct: 258 PMLPVLEQDIVKSLEECNLSYYKDK--DECPYSRDRGDSVRKRCHEI-LEEVEKEIPNIR 314

Query: 225 DL 226
           ++
Sbjct: 315 EM 316


>gi|332290509|ref|YP_004421361.1| C32 tRNA thiolase [Gallibacterium anatis UMN179]
 gi|330433405|gb|AEC18464.1| C32 tRNA thiolase [Gallibacterium anatis UMN179]
          Length = 306

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 82/241 (34%), Gaps = 20/241 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V +SGG DS   L+ +   L   +    +  A+++D   +    +EV        
Sbjct: 35  GDRVMVCLSGGKDS-YTLLDILLNLKLNAPVNFEIVAVNLD-QKQPGFPEEVLP--TYLQ 90

Query: 79  RLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L + + +V        K   P+     +     R  ++   A  + AT I   H  DD 
Sbjct: 91  QLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDM 150

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           LET+++        K    S     I  D    + RP   CR +DI  +   +       
Sbjct: 151 LETLFLNMFYGGKMK----SMPPKLISDDGKQIVIRPLAYCREKDIARYAEAKQFPII-- 204

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRS 248
           P N        +R  V+  ++  D          F  L+  V + +            R 
Sbjct: 205 PCNLCGSQPNLQRQVVKEMLQQWDRQYPGRIETMFSALQNIVPSHLCDAKLFDFKSIQRG 264

Query: 249 I 249
           +
Sbjct: 265 V 265


>gi|312877002|ref|ZP_07736976.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796233|gb|EFR12588.1| PP-loop domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 303

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       +LV +SGG DSM L   L S            + + ++  + + +    + V
Sbjct: 42  RMFDKKDKVLVVISGGKDSMALWHILAS-------EGYNVTGMYINLGIGQYSDKSQQVV 94

Query: 74  SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123
                +  +   V   K              +    +     +  L ++ A     + + 
Sbjct: 95  ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSVCGSIKRYLFNKVAYDGGFSAVA 154

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+  T+       + E  +          +   +   +P       +   ++L 
Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESTHPKLVKKVKPLYTLTERENLFYVLI 213

Query: 184 RNISWCEDPS 193
             I +  D  
Sbjct: 214 NKIEFLHDEC 223


>gi|219870570|ref|YP_002474945.1| putative ATPase [Haemophilus parasuis SH0165]
 gi|219690774|gb|ACL31997.1| predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Haemophilus parasuis SH0165]
          Length = 295

 Score = 77.6 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS      L  +L+ R    I F  ++V+  L +       +V  +  
Sbjct: 22  GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVN--LDQKQSGFPEHVLPEYL 76

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 77  ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 136

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  L  M   ++ D    I  RP   C+ +DI  + + +     
Sbjct: 137 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII 191

Query: 190 EDPSNT 195
             P N 
Sbjct: 192 --PCNL 195


>gi|256811518|ref|YP_003128887.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
 gi|256794718|gb|ACV25387.1| PP-loop domain protein [Methanocaldococcus fervens AG86]
          Length = 335

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 92/243 (37%), Gaps = 45/243 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEV--RYVSDV 76
           I+V +SGG DS+   + LH +   R    IK  A++VD     +R   +D    + +   
Sbjct: 78  IIVGLSGGKDSL---LLLHLLEVYRRKYGIKLIAVTVDVNIGGVRPWREDTEGVKLIKHH 134

Query: 77  CSRLRIAH-------------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT--- 120
           C  L + H              +++  +   +     +    +  L+ + AK I      
Sbjct: 135 CEMLDVPHLLLKNDLDVVELSEILTKNSKGMEFSPCFSCSVIKRHLLGKLAKEIAEKENI 194

Query: 121 -----LIMTAHTFDDQLETVYMRSQRDYAEKGM-----GLSGMCDTILYDLNL---WISR 167
                 +   H  DD  +T+     +    K M       S + D   + + L    I R
Sbjct: 195 PYEKVKLAYGHNLDDNSDTILANLFKGERLKFMRPLTKFKSNVVDYQSFKIPLEECTIIR 254

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDR-FERVR---VRRFVRDIDLHALYLKMKKF 223
           P L    +DI   L +  I + +D    D   + R R   +RR   +I L +L +++   
Sbjct: 255 PMLPVLEKDIVKALEECGIEYYKDK---DVCPYSRDRGDSIRRRCHEI-LESLEVEIPNI 310

Query: 224 QDL 226
           +++
Sbjct: 311 REM 313


>gi|323342529|ref|ZP_08082761.1| PP-loop family protein [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463641|gb|EFY08835.1| PP-loop family protein [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 276

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 60/178 (33%), Gaps = 10/178 (5%)

Query: 15  SLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RY 72
            L+ P   I V +SGG DSM L+     +L   S        I +D    E  +  + + 
Sbjct: 28  QLIQPNDCIGVCISGGKDSM-LMALCFKILVQHSEVPFTVKYIVMDPGYNEVNRQRIYQN 86

Query: 73  VSDVCSRLRIAHSVVSW--KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             ++   L I              +          R   + + A+ +    I   H +DD
Sbjct: 87  AHEL--ELDIEMFDAKIFDYVDHIEKSPCYLCARMRRGHLYQFAEQLGCNKIALGHHYDD 144

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            +ET  M       + G  +  +  T   D  + + RP    R   I  ++    + +
Sbjct: 145 VIETTVMNLFYG-GQFGTMMPRLKSTSHPD--IELIRPLYLVRESSIIKWVNCTGLEF 199


>gi|317484593|ref|ZP_07943497.1| PP-loop domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924133|gb|EFV45315.1| PP-loop domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 303

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 67/195 (34%), Gaps = 28/195 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE+ + F         ILVA+SGG DS+ L++       + S      + + +D  +   
Sbjct: 39  IETGKLFTHE----DRILVALSGGKDSLSLML-------ELSRQGYDVTGLHIDLGI-PG 86

Query: 66  AKDEVRYV-SDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAK 115
           + + VR V    C +      V         +     + +  + +A  + +    ++ A 
Sbjct: 87  SSEIVRGVIERFCGKHGFKLIVKEMAKEGLAIPLVKQRLKRPICSACGKIKRHYFNKTAL 146

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPFLRCR 173
               T + T H  DD++     R   +     +G        L   +      +PF R  
Sbjct: 147 EEGFTALATGHNLDDEI----ARLFSNTLRWDVGYLSDQGPRLDGEDGFARKVKPFWRLT 202

Query: 174 REDIRSFLLQRNISW 188
             +  ++     I  
Sbjct: 203 EFETATYAFLEEIEH 217


>gi|110798619|ref|YP_696182.1| PP-loop family protein [Clostridium perfringens ATCC 13124]
 gi|110802622|ref|YP_698796.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|168208039|ref|ZP_02634044.1| PP-loop family protein [Clostridium perfringens E str. JGS1987]
 gi|168210083|ref|ZP_02635708.1| PP-loop family protein [Clostridium perfringens B str. ATCC 3626]
 gi|168213775|ref|ZP_02639400.1| PP-loop family protein [Clostridium perfringens CPE str. F4969]
 gi|168216881|ref|ZP_02642506.1| PP-loop family protein [Clostridium perfringens NCTC 8239]
 gi|169347271|ref|ZP_02866210.1| PP-loop family protein [Clostridium perfringens C str. JGS1495]
 gi|182624682|ref|ZP_02952463.1| PP-loop family protein [Clostridium perfringens D str. JGS1721]
 gi|110673266|gb|ABG82253.1| PP-loop family protein [Clostridium perfringens ATCC 13124]
 gi|110683123|gb|ABG86493.1| PP-loop family protein [Clostridium perfringens SM101]
 gi|169296667|gb|EDS78798.1| PP-loop family protein [Clostridium perfringens C str. JGS1495]
 gi|170660672|gb|EDT13355.1| PP-loop family protein [Clostridium perfringens E str. JGS1987]
 gi|170711838|gb|EDT24020.1| PP-loop family protein [Clostridium perfringens B str. ATCC 3626]
 gi|170714722|gb|EDT26904.1| PP-loop family protein [Clostridium perfringens CPE str. F4969]
 gi|177910079|gb|EDT72473.1| PP-loop family protein [Clostridium perfringens D str. JGS1721]
 gi|182381048|gb|EDT78527.1| PP-loop family protein [Clostridium perfringens NCTC 8239]
          Length = 345

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 25/194 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---- 59
             I++++ + + +     I +A+SGG DS   LI        +  G+I F  + +     
Sbjct: 39  KFIKAIKDY-KLVEEGDKIAIAISGGKDS---LIMAKLFQELKKHGQINFELVFLAMDPG 94

Query: 60  -H-CLRETAKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISE 112
            H  +RE        + D C  L I   +         +   +          R   +  
Sbjct: 95  YHPQIRE-------LLEDNCKYLDIPVHIYDSGIFQVVDKIAKDYPCYMCARMRRGSLYG 147

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK +    +   H F+D +ET  +            L  +         + + RP    
Sbjct: 148 KAKELGCNKLALGHHFNDVIETTMLNVL-YAGNFKTMLPKLKAANF--DGIELIRPLYYI 204

Query: 173 RREDIRSFLLQRNI 186
             + I+ ++ +  I
Sbjct: 205 EEKYIKRWIQRAGI 218


>gi|220905538|ref|YP_002480850.1| PP-loop domain-containing protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869837|gb|ACL50172.1| PP-loop domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 303

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 67/192 (34%), Gaps = 24/192 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE  + F R       +LVA+SGG DS+ L++       + S      + + +D  +  +
Sbjct: 38  IEGQKLFTRD----ERVLVALSGGKDSLALML-------ELSRQGYNVTGLHIDLGIPVS 86

Query: 66  AKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKT 116
           +      V   C++  +   +         +    ++    + +A  + +    ++ A  
Sbjct: 87  SAAARGVVERFCAKHGLKLMIREMAAEGLAIPAVKARLNRPVCSACGKIKRHFFNKVALD 146

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRRE 175
                + T H  DD++  ++  + R        LS     +  +       +P  R    
Sbjct: 147 EGFDALATGHNLDDEVARLFSNTLR---WDTAYLSDQGPRLDSEHGFSRKVKPLWRLTEF 203

Query: 176 DIRSFLLQRNIS 187
           +  ++     I 
Sbjct: 204 ETANYAFLMGIE 215


>gi|254519485|ref|ZP_05131541.1| PP-loop domain-containing protein [Clostridium sp. 7_2_43FAA]
 gi|226913234|gb|EEH98435.1| PP-loop domain-containing protein [Clostridium sp. 7_2_43FAA]
          Length = 288

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 15/189 (7%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +++V+ +  +LV     I VA+SGG DS+ L+      L        +   I++D   
Sbjct: 39  KFVKAVKDY--NLVEEGDKIAVAISGGKDSL-LMAKCFQELKKHGQMNFELEFIAMDPGY 95

Query: 63  RETAKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
               K     + + C+ L I   +         +   +          R   +   AK +
Sbjct: 96  HPQIK---ELLIENCNHLGIPVHIYEGKIFEVVDKMARDYPCYLCARMRRGSLYSKAKEL 152

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +   H ++D +ET  +            L  +         + + RP      E I
Sbjct: 153 GCNKLALGHHYNDVIETTLLNVL-YAGNFKTMLPKLKAANF--EGMELVRPLYYVEEEYI 209

Query: 178 RSFLLQRNI 186
           + F     I
Sbjct: 210 KRFTNNAGI 218


>gi|124505367|ref|XP_001351425.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|6562748|emb|CAB62887.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 1245

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 4/148 (2%)

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
               K    +++   H  +D  ETV ++  R    K   L G+   + Y  N  + RPF+
Sbjct: 515 YCILKKKIKSIVFLGHHQNDNNETVLLQFFRGVFLK--NLRGIK-FLTYYKNCLLYRPFI 571

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
           +  +  +  ++   N +W  D SN +    R  +R  V     H L  K  K ++    +
Sbjct: 572 KLNKLHLYRYMQLINKTWNFDSSNNNMSISRNFIRNVVIPNITHMLKDKSYKNRENH-NI 630

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILN 258
           +  +     K++      +    +  L+
Sbjct: 631 DKEINEKNDKHMLDDNVCVDYHDETPLH 658


>gi|121602698|ref|YP_989113.1| PP-loop family protein [Bartonella bacilliformis KC583]
 gi|205830555|sp|A1UT10|TTCA_BARBK RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|120614875|gb|ABM45476.1| PP-loop family protein [Bartonella bacilliformis KC583]
          Length = 278

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/235 (20%), Positives = 83/235 (35%), Gaps = 47/235 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAIS 57
           +  +  +++  F   L      LVA+SGG DS        AL   L  R    ++  A +
Sbjct: 38  LLRNMRQAIDDF-SMLSSGEKWLVALSGGKDS----YGLLALLLDLKWRGLLPVEILACN 92

Query: 58  VD--------HCLRETAKDEVRYVSDVCSRLRIAHSV--------VSWKNSKPQTGLMAA 101
           +D        H L            D     +I H +        V+ K ++ QT   + 
Sbjct: 93  LDQGQPGFPKHILP-----------DFLKSYKIPHRIEYQDTYSIVTGKLAQTQT-YCSL 140

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
               R   +   A+    + ++  H  DD LET +M            L+ M   ++ D 
Sbjct: 141 CSRLRRGHLYRIAREEGCSALVLGHHRDDVLETFFMNLFHGGR-----LAAMPGKLINDE 195

Query: 162 N-LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDID 212
             L++ RP +    ED+  F           P N     D  +R  ++  + DI+
Sbjct: 196 GDLFVLRPLVYAAEEDMEKFSQAMQFPII--PCNLCGSQDGLQRNAMKVMLNDIE 248


>gi|319404220|emb|CBI77813.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 278

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 74/240 (30%), Gaps = 44/240 (18%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58
            L  I         L      L+A+SGG DS        AL   L  R    +   A ++
Sbjct: 34  LLRHIRQALDDFAMLSSGKKWLIALSGGKDS----YGLLALLLDLKWRGLLPVDILACNL 89

Query: 59  D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103
           D        H L            D  +  +I   +       +            +   
Sbjct: 90  DQGQPGFPKHILP-----------DFLNYYQIPFRIEYQDTYSIVTDKLAQTQTYCSLCS 138

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LN 162
             R   +   A+    + ++  H  DD LET  M            L+ M   ++ D  +
Sbjct: 139 RLRRGHLYRIAREEGCSALVLGHHRDDVLETFLMNLFHGGR-----LAAMPGKLINDERD 193

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219
           L++ RP +    ED+  F           P N     D  +R  +++ + DI+      K
Sbjct: 194 LFVLRPLIYAAEEDMEKFSQAMQFPII--PCNFCGSQDGLQRNAMKKMLNDIERKMPGRK 251


>gi|313109042|ref|ZP_07795015.1| hypothetical protein PA39016_001660022 [Pseudomonas aeruginosa
           39016]
 gi|310881517|gb|EFQ40111.1| hypothetical protein PA39016_001660022 [Pseudomonas aeruginosa
           39016]
          Length = 281

 Score = 77.3 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 65/231 (28%), Gaps = 26/231 (11%)

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            L   R ++ ++     + W EDPSN D RF R  +RR +           +        
Sbjct: 1   MLGVSRAELEAYAQAHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWPQAVAGMARCAA 60

Query: 229 KVNNA---VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYR 285
            +  A   +A L    L    +       D L++    L   LR  +A     +      
Sbjct: 61  HLREAEDLLAELAAIDLRACRQPSELDWPDWLDLPRIAL-EPLRRLSAARQRNLLRAWLG 119

Query: 286 SMERV-----------MLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEE 334
            + R+           +            +    + R A  +W       LP        
Sbjct: 120 QLTRLPDSDHWAGWESLRDAGDDADPIWRLESGELRRGAGRIWW------LPADWRAAAG 173

Query: 335 TTVWDGRYQFQNLSDS-----LIQIGPQSYRKADVPSGIPPIIAQRALSSM 380
             VW+       L  +     L ++     R      G    +A R    +
Sbjct: 174 PFVWERPAHPLLLPGNGRLALLGEVPAGPLRVDYRRGGEVLALAGRGRRDL 224


>gi|312792431|ref|YP_004025354.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179571|gb|ADQ39741.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 303

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       +LV +SGG DSM L   L S            + + ++  + + +    + V
Sbjct: 42  RMFDKEDKVLVVISGGKDSMALWHILAS-------EGYNVTGMYINLGIGQYSDKSQQVV 94

Query: 74  SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123
                +  +   V   K              +    +     +  L ++ A     + + 
Sbjct: 95  ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSVCGSIKRYLFNKVAYDGGFSAVA 154

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+  T+       + E  +          +   +   +P       +   ++L 
Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESTHPKLVKKVKPLYTLTERENLFYVLI 213

Query: 184 RNISWCEDPS 193
             I +  D  
Sbjct: 214 NKIEFLHDEC 223


>gi|289193222|ref|YP_003459163.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
 gi|288939672|gb|ADC70427.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
          Length = 336

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 77/226 (34%), Gaps = 50/226 (22%)

Query: 8   SVRFFV--RSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HC 61
            V  F+    ++ P  ++ V +SGG DS+   + LH +   R    IK  A++VD     
Sbjct: 63  KVGRFINKHKIIAPRDVVIVGLSGGKDSL---LLLHLLEVYRRKYGIKLIAVTVDVNIGG 119

Query: 62  LRETAKD--EVRYVSDVCSRLRIAH-------------SVVSWKNSKPQTGLMAAAREAR 106
           +R  ++D   V+ +   C  L + H              +++  +   +     +    +
Sbjct: 120 IRPWSEDKEGVKLIKHHCEMLDVPHLILKNDLDVVELSEILTKNSKGMEFSPCFSCSVIK 179

Query: 107 YALISEHAKTINAT--------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
             L+ + AK I            +   H  DD  +T+     +        L  M     
Sbjct: 180 RHLLGKLAKEIAEEENIPYEKVKLAYGHNLDDNSDTILANIFKGER-----LKFMRPLTR 234

Query: 159 YDLN-------------LWISRPFLRCRREDIRSFLLQRNISWCED 191
           +  N               I RP L     DI   L +  I + +D
Sbjct: 235 FKYNEVDYQSFKIPLEECIIIRPMLPVLERDIIKALEECGIEYYKD 280


>gi|49475605|ref|YP_033646.1| hypothetical protein BH08400 [Bartonella henselae str. Houston-1]
 gi|81648390|sp|Q6G5E1|TTCA_BARHE RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|49238412|emb|CAF27639.1| hypothetical protein BH08400 [Bartonella henselae str. Houston-1]
          Length = 282

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 76/240 (31%), Gaps = 44/240 (18%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58
            L  I         L      LVA+SGG DS        AL   L  R    ++  A ++
Sbjct: 38  LLRHIRQAFDDFSMLSSGKKWLVALSGGKDS----YGLLALLLDLKWRGLLPVEILACNL 93

Query: 59  D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103
           D        H L            D  +  +I H +       +            +   
Sbjct: 94  DQGQPGFPKHILP-----------DFLNSYQIPHRIEYQDTYSIVTDKLVHTQTYCSLCS 142

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN- 162
             R   +   A+    + ++  H  DD LET +M            L+ M   ++ D   
Sbjct: 143 RLRRGNLYRIAREEGCSALVLGHHRDDVLETFFMNLFHGGR-----LAAMPGKLINDEGD 197

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219
           L++ RP +    ED+  F           P N     D  +R  ++  ++DI+      K
Sbjct: 198 LFVLRPLVYAAEEDMEKFSQAMQFPII--PCNLCGSQDGLQRNAMKEMLKDIERKMPGRK 255


>gi|222528237|ref|YP_002572119.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455084|gb|ACM59346.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 301

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 73/251 (29%), Gaps = 21/251 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       ILV +SGG DSM L   L S            + + ++  +   +    + V
Sbjct: 42  KMFDKKDKILVVISGGKDSMALWHILAS-------EGYNVTGMYINLGIGHYSDKSQQVV 94

Query: 74  SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123
                +  +   V   K              +    +     +  L ++ A     + + 
Sbjct: 95  ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSICGSIKRYLFNKVAYDGGFSAVA 154

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+  T+       + E  +          +   +   +P       +   ++L 
Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESTHPKLVKKVKPLYTLTERENLFYVLI 213

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
             I +  D         R  + + V +          ++F  +   +          Y  
Sbjct: 214 NKIEFLHDECPH-AIGARSILYKEVLNRLEEESPGTKQRF--ITSFLEKGRRHFQDVYEK 270

Query: 244 VHMRSIIAISQ 254
           V ++  I+  Q
Sbjct: 271 VELKECISCGQ 281


>gi|108773397|ref|YP_635915.1| hypothetical protein RF62 [Helicosporidium sp. ex Simulium jonesii]
 gi|122197346|sp|Q2EEX9|TILS_HELSJ RecName: Full=tRNA(Ile)-lysidine synthase, plastid; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|87242972|gb|ABD33964.1| tRNA(Ile)-lysidine synthase [Helicosporidium sp. ex Simulium
           jonesi]
          Length = 280

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 87/265 (32%), Gaps = 57/265 (21%)

Query: 1   MFLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M  + I S    +++L+    ++L   S G DS  LL  L  ++S+++  KIK       
Sbjct: 1   MLKNIIYSYITQLKNLLSKKLNVLCTFSAGQDSFFLLYCLIHIISNKN-NKIKLQ--HNH 57

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSV--VSWKNSKPQTGLMAAAREARYA-LISEHAKT 116
           H L+ +          V S  +I   +  +    +         AR+ RY   +      
Sbjct: 58  HFLQSSNILSFWQCIKVASIFKIPLVINLLEINLANKDFMTENEARKWRYDSFLRNSLFQ 117

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL-SGMCDTILY---------------- 159
                I   HT  D LET +    R+       +   +   I Y                
Sbjct: 118 NEKPSIFIGHTGSDLLETFFWHFLRNSIIDYQLIKKKLLWNIPYYISNFSSVGYKNSSKV 177

Query: 160 ---------------DLNLWISRPFLRCRREDIRS----------------FLLQRNI-- 186
                          + NL +++      ++D+                  FL ++N+  
Sbjct: 178 KIKLTNKKKKINCLINHNLMLNKAKKSFLKKDLTQLVLITRPLVNLHRQDIFLFRKNLKL 237

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDI 211
               D SN ++ + R R+R  +  I
Sbjct: 238 PVITDKSNDNNYYYRNRIRNILFPI 262


>gi|225848863|ref|YP_002729027.1| PP-loop domain protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644597|gb|ACN99647.1| PP-loop domain protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 303

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 91/243 (37%), Gaps = 28/243 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F + +E      +       ILVAVSGG DS+ L  AL ++        I          
Sbjct: 31  FDNRVEKTIKEFKMFKKEDKILVAVSGGKDSLSLWKALTNLGYQADGFYINL-------G 83

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK------------NSKPQTGLMAAAREARYAL 109
           + E ++   +  +    ++      +S K            +S+P   +       RY  
Sbjct: 84  IGEYSEKSEKLATAFSEKIGRPLYKISLKQEIMPIPEIKKHDSRPTCSVCGT--VKRY-Y 140

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI--SR 167
           +++ AK     +I T H  DD+   V   +  +++ + +        +L + + +I   +
Sbjct: 141 MNKFAKDNGYKIIATGHNLDDEA-AVLFSNTLNWSVEYL---KRQYPVLPEEDGFIRKVK 196

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P  +   ++   + +   I + E+     +    +  + F+  ++  +   K++ + +  
Sbjct: 197 PLCKISEKESAMYAILSGIEYIEEECPFSEGATSIDYKIFLSQLEEKSPGTKLRFYSEFL 256

Query: 228 VKV 230
            K+
Sbjct: 257 RKM 259


>gi|323143988|ref|ZP_08078642.1| PP-loop family protein [Succinatimonas hippei YIT 12066]
 gi|322416237|gb|EFY06917.1| PP-loop family protein [Succinatimonas hippei YIT 12066]
          Length = 290

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 13/166 (7%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDV 76
               ++V +SGG DS  +L  L S+     F       + +D     T +  V  ++  V
Sbjct: 56  PDDKVMVCISGGKDSYAMLDLLLSLKRSAPFP-FSLIPVHLDPGFPGTPEGVVEGHLQKV 114

Query: 77  CSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
                I       +S +  + +  + +     R   +   A+ +    +   H  DD L 
Sbjct: 115 GLPYHIIKRPVFEISKEKLQGKKTMCSICSRMRRGFLYGFAREMGFNKVALGHHRDDILA 174

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILY--DLNLWISRPFLRCRREDI 177
           T ++           G+      IL   D  L + RP   CR  D+
Sbjct: 175 TYFLNLF------YSGIMKTMPPILRTDDDTLTLIRPLAYCRERDL 214


>gi|315927396|gb|EFV06734.1| PP-loop family protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 200

 Score = 76.9 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 15/151 (9%)

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R      +     C+      N  + RP L   +++I SFL +++I +  D SN +
Sbjct: 1   MQLSRGAGLAEILGMQECEKRS---NYTLLRPLLFISKDEISSFLKEKDIFYFHDESNEN 57

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +++ R  +R+   +  +   +  +K+          + + L      ++    I   Q +
Sbjct: 58  EKYFRNYIRKNFSNAFVSEFHQGLKR----------SFSYLDEDRKKLYDFENIKEIQGL 107

Query: 257 LNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
           L         L+  +  + G  +S    + +
Sbjct: 108 LICPKNE--SLIARAVKMKGLLLSTAQRKEL 136


>gi|312128625|ref|YP_003993499.1| PP-loop domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778644|gb|ADQ08130.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 303

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 57/190 (30%), Gaps = 18/190 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       ILV +SGG DSM L   L S            + + ++  + + +    + V
Sbjct: 42  KMFDKKDKILVVISGGKDSMALWHILAS-------EGYNVTGMYINLGIGQYSDKSQQVV 94

Query: 74  SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123
                +  +   V   K              +    +     +  L ++ A     + + 
Sbjct: 95  ESFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSICGSIKRYLFNKVAYDGGFSAVA 154

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+  T+       + E  +          +   +   +P       +   ++L 
Sbjct: 155 TGHNLDDEAATLLGNVL-SWEEGYLARQSPVLESTHPKLVKKVKPLYTLTERENLFYVLI 213

Query: 184 RNISWCEDPS 193
             I +  D  
Sbjct: 214 NKIEFLHDEC 223


>gi|240850638|ref|YP_002972038.1| putative PP-loop ATPase [Bartonella grahamii as4aup]
 gi|240267761|gb|ACS51349.1| putative PP-loop ATPase [Bartonella grahamii as4aup]
          Length = 291

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 75/240 (31%), Gaps = 44/240 (18%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58
            L  +         L      LVA+SGG DS        AL   L  R    ++  A ++
Sbjct: 48  LLRHMRQALDDFSMLSTGKKWLVALSGGKDS----YGLLALLLDLKWRGLLSVEILACNL 103

Query: 59  D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103
           D        H L            D  S  +I + +       +            +   
Sbjct: 104 DQGQPGFPKHILP-----------DFLSSYKIPYRIEYQDTYSIVTDKLAESQTYCSLCS 152

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN- 162
             R   +   A+    + ++  H  DD LET +M            L+ M   +  D   
Sbjct: 153 RLRRGNLYRIAREEGCSALVLGHHRDDVLETFFMNLFHGGR-----LAAMPGKLKNDEGD 207

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219
           L++ RP +    ED+  F           P N     D  +R  ++  +++I+      K
Sbjct: 208 LFVLRPLVYAAEEDMEKFSQAMQFPII--PCNLCGSQDGLQRNAMKEMLKNIERQMPGRK 265


>gi|121608434|ref|YP_996241.1| PP-loop domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gi|205830636|sp|A1WHW6|TTCA_VEREI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|121553074|gb|ABM57223.1| PP-loop domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 316

 Score = 76.5 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 17/185 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
              +     ++V +SGG DS  LL  L  + + R+       A+++D   +        +
Sbjct: 48  FHMIEAGDKVMVCMSGGKDSYTLLDILLKLRA-RAPIAFDLVAVNLD-QKQPG---FPAH 102

Query: 73  VS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMT 124
           V     +   + + + +                  +     R  ++   A  +  T I  
Sbjct: 103 VLPGYLASAGVPYHIETEDTYGIVKRLIPEGKTTCSLCSRLRRGILYRVASELGCTKIAL 162

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD L+T+ +        K    S     +  D    + RP      +D   +  QR
Sbjct: 163 GHHRDDILQTLLLNMFFGGKMK----SMPPKLVSDDGQHVVIRPLAYVAEKDTARWAAQR 218

Query: 185 NISWC 189
           N    
Sbjct: 219 NFPII 223


>gi|332678208|gb|AEE87337.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf.
           novicida Fx1]
          Length = 267

 Score = 76.5 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 34  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   ++                         R  ++ + A+  N T +   H  DD 
Sbjct: 90  NKGVEFYIIERDTYSVVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + KGM    + D    D    + RP      ++   +   +       
Sbjct: 150 IETFFLNLFYNGSIKGMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242


>gi|114704638|ref|ZP_01437546.1| hypothetical protein FP2506_06876 [Fulvimarina pelagi HTCC2506]
 gi|114539423|gb|EAU42543.1| hypothetical protein FP2506_06876 [Fulvimarina pelagi HTCC2506]
          Length = 297

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 19/175 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
             A  LVA+SGG DS   L+AL   L  R    +   A ++D   +       ++V  D 
Sbjct: 60  QGARWLVAISGGKDS-YGLLALLLDLKWRGLLPVDLLACNLD-QGQPN---FPKHVLPDW 114

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            ++  IAH +       +            +     R   +   A+      ++  H  D
Sbjct: 115 LAKNGIAHRIEYRDTYSIVTDKLPDNATYCSLCSRLRRGHLYRIAREEGCEALVLGHHRD 174

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTIL-YDLNLWISRPFLRCRREDIRSFLLQ 183
           D LET ++            LS M   +L Y+ +L + RP +    ED+  F   
Sbjct: 175 DCLETFFLNLFHGGK-----LSAMPAKLLNYEGDLLVLRPLINSAEEDLARFAEA 224


>gi|257465651|ref|ZP_05630022.1| MesJ protein [Actinobacillus minor 202]
 gi|257451311|gb|EEV25354.1| MesJ protein [Actinobacillus minor 202]
          Length = 310

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS      L  +L+ +    I F  ++V+  L +       +V  +  
Sbjct: 39  GDKVMVCLSGGKDS---YTLLDILLNLKLNAPIHFDIVAVN--LDQKQPGFPEHVLPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++        K M    M D    D    + RP   C+ +DI  + + +      
Sbjct: 154 MLETLFLNMFYGGKLKSMPPKLMSD----DGKQIVIRPLAYCKEKDIEKYAVAKQFPII- 208

Query: 191 DPSNT 195
            P N 
Sbjct: 209 -PCNL 212


>gi|240949554|ref|ZP_04753894.1| hypothetical protein AM305_11435 [Actinobacillus minor NM305]
 gi|240296127|gb|EER46788.1| hypothetical protein AM305_11435 [Actinobacillus minor NM305]
          Length = 310

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 19/185 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS      L  +L+ +    I F  ++V+  L +       +V  +  
Sbjct: 39  GDKVMVCLSGGKDS---YTLLDILLNLKLNAPIHFDIVAVN--LDQKQPGFPEHVLPEYL 93

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 94  ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            LET+++        K M    M D    D    + RP   C+ +DI  + + +      
Sbjct: 154 MLETLFLNMFYGGKLKSMPPKLMSD----DGKQIVIRPLAYCKEKDIEKYAVAKQFPII- 208

Query: 191 DPSNT 195
            P N 
Sbjct: 209 -PCNL 212


>gi|307546134|ref|YP_003898613.1| C32 tRNA thiolase [Halomonas elongata DSM 2581]
 gi|307218158|emb|CBV43428.1| C32 tRNA thiolase [Halomonas elongata DSM 2581]
          Length = 298

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L ++  +         A+++D   +        +V  +  
Sbjct: 55  GDKVMVCLSGGKDSYTMLEILRNLQRNAPV-DFSLVAVNLD-QKQPG---FPEHVLPEYL 109

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + ++                   +     R   +  +A+ I AT I   H  +D
Sbjct: 110 EGIGVDYHILERDTYSVVKEKTPEGKTTCSLCSRLRRGSLYGYAEEIGATKIALGHHRED 169

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  L  M   +L D    I  RP   CR  DI  F         
Sbjct: 170 ILETLFLNMF-----FGGSLKSMPPKLLSDDGKNIVIRPLAYCREADIAEFSRCMEFPII 224

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
             P N     +    R+ V+++          + + +   V N     +          +
Sbjct: 225 --PCNLCGS-QPNLQRQVVKEMLADWEARHPGRLESMFKAVTNVAPSQLADRELFDFAGL 281


>gi|156088345|ref|XP_001611579.1| hypothetical protein [Babesia bovis T2Bo]
 gi|156088349|ref|XP_001611581.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798833|gb|EDO08011.1| conserved hypothetical protein [Babesia bovis]
 gi|154798835|gb|EDO08013.1| conserved hypothetical protein [Babesia bovis]
          Length = 253

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 16/134 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD------------- 68
           + + VSGG DS  L   L ++  +R   K     ++ D  ++    D             
Sbjct: 51  VCIGVSGGKDSSVLAHVLATL-KERYHRKWTLYLLAADEGIKGYRDDSLGVVMGMSNPNY 109

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           +   + +   R      +    +   Q          R  ++   A+ + A  + T H  
Sbjct: 110 DGLKILNFKERFG--FDMDEVVSLIGQKNNCTVCGTFRRQILEIGARMLGANKLCTGHNI 167

Query: 129 DDQLETVYMRSQRD 142
           DD  ETV +   R+
Sbjct: 168 DDNAETVLLNICRN 181


>gi|156088341|ref|XP_001611577.1| PP-loop family protein [Babesia bovis]
 gi|154798831|gb|EDO08009.1| PP-loop family protein [Babesia bovis]
          Length = 407

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 16/134 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD------------- 68
           + + VSGG DS  L   L ++  +R   K     ++ D  ++    D             
Sbjct: 51  VCIGVSGGKDSSVLAHVLATL-KERYHRKWTLYLLAADEGIKGYRDDSLGVVMGMSNPNY 109

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           +   + +   R      +    +   Q          R  ++   A+ + A  + T H  
Sbjct: 110 DGLKILNFKERFG--FDMDEVVSLIGQKNNCTVCGTFRRQILEIGARMLGANKLCTGHNI 167

Query: 129 DDQLETVYMRSQRD 142
           DD  ETV +   R+
Sbjct: 168 DDNAETVLLNICRN 181


>gi|302348148|ref|YP_003815786.1| hypothetical protein ASAC_0348 [Acidilobus saccharovorans 345-15]
 gi|302328560|gb|ADL18755.1| hypothetical protein ASAC_0348 [Acidilobus saccharovorans 345-15]
          Length = 329

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 21/231 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           IL+A+SGG D   LL  +  +        +    I   H   +   ++ RY+        
Sbjct: 53  ILLALSGGKDGYTLLDVMSRIYKSDRLIGLNI--IEGIHGYNKE--EDARYLVMTAKEFG 108

Query: 82  IAHSVVSWKNSKP---------------QTGLMAAAREARYALISEHAKTINATLIMTAH 126
           I   V S K                   +         AR  +++ +A+ + A  + TAH
Sbjct: 109 IDVIVTSIKEYTGLSVDEIMYKAKERSTRVSACTYCGIARRRIMNYYARELGANKLATAH 168

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR--SFLLQR 184
             DD+ +T  +   R   E  +    + + +   + +   +P  +    +    +FL   
Sbjct: 169 NLDDESQTAVINILRGDFESLLRQHPLAELVRDPMLVRRIKPLRKIYEWETATFTFLKGY 228

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +I   E P        R +VRR +   +       ++  + L   +    A
Sbjct: 229 HIQETECPYIYQLPTLRAKVRRELYRYESEHPGALLRFIESLDRMLEPIAA 279


>gi|311740141|ref|ZP_07713973.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304696|gb|EFQ80767.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 219

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +  AHT DDQ ET+ + + R        ++GM +    +    + RP L  RR D     
Sbjct: 28  VAVAHTADDQAETLLLGALRGR------VTGMSERSEVE-GARVVRPLLGVRRADTEGAC 80

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRD 210
            +  +S   DP N D  F RV +RR V  
Sbjct: 81  AELGLSAWRDPQNADTNFRRVALRREVIP 109


>gi|114797440|ref|YP_761448.1| C32 tRNA thiolase [Hyphomonas neptunium ATCC 15444]
 gi|123027763|sp|Q0BYJ5|TTCA_HYPNA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|114737614|gb|ABI75739.1| PP-loop family protein [Hyphomonas neptunium ATCC 15444]
          Length = 295

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 33/193 (17%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--------HCLRETAKDE 69
                LV +SGG DS GLL  L  +        +   A ++D        H L E     
Sbjct: 54  PHPKWLVCLSGGKDSYGLLAVLLDLQWQ-GALPVDLIACNLDQGQPGFPKHILPE----- 107

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLI 122
                   ++  + H +++                  +     R  ++   A+      I
Sbjct: 108 ------WLTQNGVTHKIITEDTYSIVTDKVPEGRTYCSMCSRLRRGILYRVAREEGCEAI 161

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +  H  DD L T  M         G   +     +  D ++ + RP +    +D+  F  
Sbjct: 162 VLGHHRDDALATFMMNLIHG----GRLAAMPPKLLNDDGDVQVFRPLITAAEDDLAKFAE 217

Query: 183 QRNISWCEDPSNT 195
                    P N 
Sbjct: 218 AMEFPII--PCNL 228


>gi|167856039|ref|ZP_02478783.1| hypothetical protein HPS_10445 [Haemophilus parasuis 29755]
 gi|167852834|gb|EDS24104.1| hypothetical protein HPS_10445 [Haemophilus parasuis 29755]
          Length = 316

 Score = 76.1 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS      L  +L+ R    I F  ++V+  L +       +V  +  
Sbjct: 43  GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVN--LDQKQPGFPEHVLPEYL 97

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 98  ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 157

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  L  M   ++ D    I  RP   C+ +DI  + + +     
Sbjct: 158 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVAKQFPII 212

Query: 190 EDPSNT 195
             P N 
Sbjct: 213 --PCNL 216


>gi|289577704|ref|YP_003476331.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527417|gb|ADD01769.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
          Length = 300

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 33/250 (13%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  I   R F +       +L  VSGG DSM L   L               A+ ++  +
Sbjct: 35  LKNIRKNRMFEK----GEKVLAVVSGGKDSMALWDILVK-------EGYNVVAMYINLGI 83

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISE 112
            E +      V        +   V   K              +    +     +  L ++
Sbjct: 84  GEYSNRSQEVVEKFAKENNLPLIVKDIKKEFGLDIYKLSKTLRRSPCSVCGSIKRYLFNK 143

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A     + + T H  DD+  T++      + E  +   G      +   +   +P    
Sbjct: 144 VAYDGGFSAVATGHNLDDEAATLFGNVL-SWEEGYLARQGPVLPQTHPKLIKKVKPLYTL 202

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-----------K 221
              +   ++L   I +  +          +  +  +  ++  +   K            K
Sbjct: 203 TERENMYYVLLNKIEFLHEECPHSVGARSILYKELLNKLEEESPGTKQRFLSGFLKKGKK 262

Query: 222 KFQDLRVKVN 231
            FQD+R K+ 
Sbjct: 263 HFQDVREKLE 272


>gi|330721907|gb|EGG99859.1| tRNA(Cytosine32)-2-thiocytidine synthetase [gamma proteobacterium
           IMCC2047]
          Length = 282

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 15/183 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDV 76
              ++V +SGG DS  +L  L ++       K    A+++D   +    ++V   Y+  +
Sbjct: 36  GDKVMVCLSGGKDSYTMLEILRNLQQHAPV-KFDIIAVNLD-QKQPGFPEDVLPNYLESI 93

Query: 77  CSRLRI----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
                I     +SVV  K  + +T   A     R   +   A  I AT I   H  DD +
Sbjct: 94  DQPYFILEKDTYSVVKEKTPEGKT-TCALCSRLRRGSLYGFANEIGATKIALGHHRDDIM 152

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           ET+++        K M    + D    D    + RP   C+  DI++F   +       P
Sbjct: 153 ETLFLNMFHGGKLKAMPPKLLSD----DKKNVLIRPLAYCKESDIQTFSDFKQFPII--P 206

Query: 193 SNT 195
            N 
Sbjct: 207 CNL 209


>gi|150015538|ref|YP_001307792.1| PP-loop domain-containing protein [Clostridium beijerinckii NCIMB
           8052]
 gi|149902003|gb|ABR32836.1| PP-loop domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 288

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 20/180 (11%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     I V +SGG DS+ L+  L   L      K +   +++D             + +
Sbjct: 50  IQEGDKIAVGISGGKDSI-LMAKLFQELQRHGQVKFELVFLAMDPGYHPD-------IKN 101

Query: 76  V----CSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +    C  L I        +    +   +          R   +   AK      +   H
Sbjct: 102 LLIENCEHLNIPIHMYESGIFDVVDKMAKDYPCYLCARMRRGSLYAKAKEFGCNKLALGH 161

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            ++D +ET  +        K M L  +         L + RP      E I+ F+    I
Sbjct: 162 HYNDVIETTMLNILYGGNFKTM-LPKLKAKNF--EGLELIRPMYFIEEEYIKRFINYSGI 218


>gi|46578552|ref|YP_009360.1| hypothetical protein DVU0135 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603868|ref|YP_968268.1| PP-loop domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46447963|gb|AAS94619.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564097|gb|ABM29841.1| PP-loop domain protein [Desulfovibrio vulgaris DP4]
 gi|311232477|gb|ADP85331.1| PP-loop domain protein [Desulfovibrio vulgaris RCH1]
          Length = 303

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 32/203 (15%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   +E      +   +   ILVA+SGG DS+ L++       + S      + + +D  
Sbjct: 30  FSRQVERGIHEQKLFTHDDRILVALSGGKDSLALML-------ELSRQGYNVTGLHIDLA 82

Query: 62  L---RETAKDEVRYVSDVCSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYAL 109
           +      A+     V   C+   +   V         +     +    + +A  + +   
Sbjct: 83  IPVSSPAARGV---VERFCALHGLPLIVKEMANEGLAIPAVKERLTRPICSACGKIKRYY 139

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE----KGMGLSGMCDTILYDLNLWI 165
            ++ A     T++ T H  DD++  ++  + R  A     +G GL         D     
Sbjct: 140 FNKTAIDEGFTVLATGHNLDDEVARLFSNTLRWDAAYLSDQGPGLD------SEDGFTRK 193

Query: 166 SRPFLRCRREDIRSFLLQRNISW 188
            +P  R    +  ++     I  
Sbjct: 194 VKPLWRLTEFETANYAFLMGIEH 216


>gi|85000461|ref|XP_954949.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65303095|emb|CAI75473.1| hypothetical protein, conserved [Theileria annulata]
          Length = 774

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 89/334 (26%), Gaps = 121/334 (36%)

Query: 23  LVAVSGGSDSMGLLI---------------ALHSVLSDRSFGKIK--------------- 52
           L++ SGG DSM LL                 L  + S  +    K               
Sbjct: 139 LLSCSGGVDSMSLLHSFGIIKTSYEEIIGEILTILKSRLNNNPFKIKSETTKLDHQKRKV 198

Query: 53  ------------FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV------VSWKNSKP 94
                       F  +  +H  RE    ++  +   C + +    +      +  K+   
Sbjct: 199 EVINFLKKFYDNFKVVYFNHKQREDVDKDIEVIKAACEKYKFDLIIEELPQELESKSEVS 258

Query: 95  QTGLMAAAREARYAL-----------------------ISEHAKTINATLI--------- 122
           + G     R+ R                          +    K ++  L+         
Sbjct: 259 KYGPQLMFRKWRRETCIKIIDGLSSADSTSKIGDELRDLEHVMKFLDENLVDLQTVKTPE 318

Query: 123 ---------MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                       H  +D  ET+ ++  RD +   +GL+   D                  
Sbjct: 319 DLIGLKGLVFMGHHLNDNFETLLLKISRDTSIINLGLNNFQDI----------------- 361

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
                      N  +  D +N +  +ER  +R+ V    + ++   +    D   +  N 
Sbjct: 362 -----------NEKYHADSTNDELHYERNILRKNV----IPSIVAGINGTYDTSSESANQ 406

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
                 + +    +S  A  + I        +Y+
Sbjct: 407 SVNEFYQNINNLSKSFDAFKESIEKEVEMFFYYI 440


>gi|325479605|gb|EGC82698.1| PP-loop family protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 269

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 80/214 (37%), Gaps = 15/214 (7%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-- 62
           I++V+ F  SL+     + VA+SGG DS+ LL  L   L   S  K     I +D     
Sbjct: 23  IKAVKEF--SLINEGDKVAVAISGGKDSL-LLAKLIEELHKHSKVKFDVEYICMDPGYDK 79

Query: 63  --RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R+  +  + Y+    +        V+   +K        AR  R   +   AK +   
Sbjct: 80  ENRDQLEKNLAYLKIHANIYDSQVFEVAETITKGDYPCYMCAR-MRRGFLYAKAKELGCN 138

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +   H  +D +ET  M        K M    +        ++ + RP      +DI+ +
Sbjct: 139 KVALGHHMNDVIETTMMNVLYAGNFKTMKPKLVAQNF---DDMQLIRPLYYAHEDDIKRW 195

Query: 181 LLQRNISWCEDP---SNTDDRFERVRVRRFVRDI 211
               ++         + + + + R +V+  + D+
Sbjct: 196 RDYVDLVALNCACTVTKSSESYTRKKVKELISDL 229


>gi|15602471|ref|NP_245543.1| hypothetical protein PM0606 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|81637084|sp|Q9CN39|TTCA_PASMU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|12720877|gb|AAK02690.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 314

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 85/250 (34%), Gaps = 36/250 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS      L  +L+ R    I F  ++V+          H L      
Sbjct: 41  GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFEIVAVNLDQKQPGFPEHIL------ 91

Query: 69  EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +    +I       +V  K  + +T   +     R  ++   A  + AT I  
Sbjct: 92  -PEYLQSIGVDYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 149

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183
            H  DD LET+++         G  L  M   ++ D    I  RP   C+ +DI  +   
Sbjct: 150 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAQA 204

Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           ++      P N        +R  V+  ++  D          F  ++  V + +      
Sbjct: 205 KHFPII--PCNLCGSQPNLQRQVVKEMLQKWDRQYPGRIETMFSAIQNIVPSHLCDTHLF 262

Query: 241 YLTVHMRSII 250
                 R  I
Sbjct: 263 NFKDLQRGQI 272


>gi|302870896|ref|YP_003839532.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302573755|gb|ADL41546.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 303

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 18/190 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       ILV +SGG DSM L   L S        +   + + ++  + E +    + V
Sbjct: 42  KMFDKKDKILVVISGGKDSMALWHILAS-------EEYNVTGMYINLGIGEYSDKSQQVV 94

Query: 74  SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123
                +  +   +   K              +    +     +  L ++ A     + + 
Sbjct: 95  ESFAQKNNLEVIIKDIKKEYGLDIYKLSKLLKRSTCSVCGSIKRYLFNKVAYDGGFSAVA 154

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+  T+               S + D+  +   +   +P       +   ++L 
Sbjct: 155 TGHNLDDEAATLLGNVLSWEEGYLARQSPVLDS-THPKLVKKVKPLYTLTERENLFYVLI 213

Query: 184 RNISWCEDPS 193
             I +  D  
Sbjct: 214 NKIEFLHDEC 223


>gi|87119920|ref|ZP_01075816.1| hypothetical protein MED121_01730 [Marinomonas sp. MED121]
 gi|86164622|gb|EAQ65891.1| hypothetical protein MED121_01730 [Marinomonas sp. MED121]
          Length = 280

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  +L  L ++ +      I FS ++V+  L +       ++  +  
Sbjct: 39  GDKVMVCLSGGKDSYTMLEILRNLQAS---APIDFSIVAVN--LDQKQPGFPEHILPEYL 93

Query: 78  SRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           S + + + ++                         R   +   A  I AT I   H  DD
Sbjct: 94  SSIGVDYHILERDTYSIVKELVPEGKTTCGLCSRLRRGSLYGFADEIGATKIALGHHRDD 153

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            LET+++        K    S     +  D    + RP   C+ +DI +F
Sbjct: 154 ILETLFLNMFFGGKIK----SMPPKLLSDDGRHMVIRPLAYCKEKDIEAF 199


>gi|220906828|ref|YP_002482139.1| C32 tRNA thiolase [Cyanothece sp. PCC 7425]
 gi|219863439|gb|ACL43778.1| PP-loop domain protein [Cyanothece sp. PCC 7425]
          Length = 274

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 35/187 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAK 67
               ++V +SGG DS      L  +L+ +    I F  ++V+          H L E   
Sbjct: 35  AGDRVMVCLSGGKDS---YTLLDLLLNLQRVAPIDFEILAVNLDQKQPGFPTHILPE--- 88

Query: 68  DEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
                      RL + + +       V  +       +       R  ++   A    AT
Sbjct: 89  --------YLQRLGVPYRIIEEDTYSVVKRVIPEGKTMCGLCSRLRRGILYRVATEEGAT 140

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I   H  DD +ET+++        K M    + D    D    + RP   C  EDI  +
Sbjct: 141 KIALGHHRDDIVETLFLNLFFAGQLKAMPPKLLSD----DGQHMVIRPLAYCAEEDIERY 196

Query: 181 LLQRNIS 187
              R   
Sbjct: 197 ANLRQFP 203


>gi|281412254|ref|YP_003346333.1| PP-loop domain protein [Thermotoga naphthophila RKU-10]
 gi|281373357|gb|ADA66919.1| PP-loop domain protein [Thermotoga naphthophila RKU-10]
          Length = 304

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++V+ F +     + IL+AVSGG DS+ L   L  +  +     I+              
Sbjct: 36  KAVKKF-KMFDRNSKILIAVSGGKDSVSLWHMLKKLGHEVDALFIRA-------GKSGMV 87

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISEHAK 115
           +     V      L     +V              A   R          R  L+++ A 
Sbjct: 88  QKAQEIVEKNAELLNTKLHIVDATEYFGGLSTQEIAIMLRRPVCSICGVVRRYLMNKFAY 147

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRC 172
                +++T H  +D+   +             G       +L   +  +     P +  
Sbjct: 148 ENGYNVVVTGHNLNDEASVLLGNILHWQE----GYMERQWPLLPKTHEKLVPKAKPLVLN 203

Query: 173 RREDIRSFLLQRNISWCE 190
             EDI+ +     I   E
Sbjct: 204 YEEDIKLYATLNEIPHLE 221


>gi|312137387|ref|YP_004004724.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311225106|gb|ADP77962.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 297

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 31/201 (15%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     +LVAVSGG DS+ L   L+ +         +F  + +D  + + +       
Sbjct: 42  RLIEKDEKLLVAVSGGKDSLVLAYILNKL-------GYEFEGLHIDLGIEDYS----EMC 90

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINAT 120
                 + S + +   +V  K    +       R           RY ++++ A     T
Sbjct: 91  KKSSKKIFSEIGLPLHIVKIKKLLGRGIGEVKTRRPVCSYCGLTKRY-IMNKFAYDNGFT 149

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            + T H  DD+   V+        +       + +    D  +   +P    R ++I  +
Sbjct: 150 AVATGHNLDDESAFVFSNILHWNIDYLSKQGPLLE--AEDKFVKKIKPLYELRDKEISLY 207

Query: 181 LLQRNISWCEDPSNTDDRFER 201
                I           ++ R
Sbjct: 208 ASFAKIEHVT----KKCKYAR 224


>gi|324998101|ref|ZP_08119213.1| tRNA(Ile)-lysidine synthetase [Pseudonocardia sp. P1]
          Length = 246

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 40/121 (33%), Gaps = 8/121 (6%)

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DDQ ETV +   R    + +                  RP L  RR D      +  +  
Sbjct: 1   DDQAETVLLGLGRGSGARSLAGMRAWSAPW-------LRPLLGLRRADTADACAEAGVPV 53

Query: 189 CEDPSNTDDRFERVRVRRFVRDIDLHALYLKM-KKFQDLRVKVNNAVAMLIPKYLTVHMR 247
             DP N D RF R RVR  V  +    L   + +       ++ +    L  +   +   
Sbjct: 54  WADPHNADPRFTRARVRHEVLPLLEEVLGGGVTEALARTADQLRDDDTALDEQAARLREA 113

Query: 248 S 248
           +
Sbjct: 114 A 114


>gi|296109679|ref|YP_003616628.1| PP-loop domain protein [Methanocaldococcus infernus ME]
 gi|295434493|gb|ADG13664.1| PP-loop domain protein [Methanocaldococcus infernus ME]
          Length = 321

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/204 (20%), Positives = 70/204 (34%), Gaps = 37/204 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRE--TAKDEVRYVSDV 76
           ++V +SGG DS+   + LH +   R    IK  A+++D     +R      + V+ +   
Sbjct: 75  VIVGLSGGKDSL---LLLHLLECYRRKYGIKLIAVTIDVNIGGVRPWKEDSEGVKLIKKH 131

Query: 77  CSRLRIAHSVVSWKNS---------KPQTGLM-----AAAREARY---ALISEHAKTINA 119
           C  L I H ++S             K   G+      + +   RY    L  E A+    
Sbjct: 132 CEMLDIPHYLISNDLDVVQLSEILTKNSKGMEFSPCFSCSIIKRYILGKLAKEIAEREKI 191

Query: 120 T----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--------LWISR 167
           +     +   H  DD  +T+     +    K M          +             I R
Sbjct: 192 SLDKVKLAYGHNLDDNSDTILANIFKGEKIKFMRPITKFSEREFYFGDLTLKLERCTIIR 251

Query: 168 PFLRCRREDIRSFLLQRNISWCED 191
           P L    + I   L +  I + +D
Sbjct: 252 PLLPITEDLIIKALDECKIEYYKD 275


>gi|163868317|ref|YP_001609526.1| C32 tRNA thiolase [Bartonella tribocorum CIP 105476]
 gi|205830556|sp|A9IUA2|TTCA_BART1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|161017973|emb|CAK01531.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 288

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 75/240 (31%), Gaps = 44/240 (18%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58
            L  +         L      LVA+SGG DS        AL   L  R    ++  A ++
Sbjct: 45  LLRHMRQALDDFSMLSTGKKWLVALSGGKDS----YGLLALLLDLKWRGLLPVEILACNL 100

Query: 59  D--------HCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAR 103
           D        H L            D  S  +I + +       +            +   
Sbjct: 101 DQGQPGFPKHILP-----------DFLSSYKIPYRIEYQDTYSIVTDKLAQTQTYCSLCS 149

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN- 162
             R   +   A+    + ++  H  DD LET +M            L+ M   +  D   
Sbjct: 150 RLRRGNLYRIAREEGCSALILGHHRDDVLETFFMNLFHGGR-----LAAMPGKLKNDEGD 204

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219
           L++ RP +    ED+  F           P N     D  +R  ++  +++I+      K
Sbjct: 205 LFVLRPLVYAAEEDMEKFSQAMQFPII--PCNLCGSQDGLQRNAMKEMLKNIERQMPGRK 262


>gi|302671817|ref|YP_003831777.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
 gi|302396290|gb|ADL35195.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
          Length = 387

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 30/185 (16%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS---------VDHCLRETAKDE 69
              I V +S G DSM +      +      GK  F  +          +++         
Sbjct: 146 GDKIAVCISDGKDSMLMAKLFQEL---EKHGKKNFKVVYMVMNPGYNRINY--------- 193

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              +S+    + I  +V         ++  +          R   +   AK +    I  
Sbjct: 194 ETILSN-AKLMGIPVTVFDSDIFDVVDATSKGSPCYLCARMRRGYLYSKAKELGCNKIAL 252

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H +DD +ET++M        + M       +  ++  + + RP    R EDI+ +    
Sbjct: 253 GHHYDDVIETIFMGMTYGGQVQTM--MPKLHSTNFE-GMELIRPLYLVREEDIKRWRDYN 309

Query: 185 NISWC 189
           N+++ 
Sbjct: 310 NLTFI 314


>gi|15668662|ref|NP_247461.1| hypothetical protein MJ_0485 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2496002|sp|Q57909|Y485_METJA RecName: Full=CTU1/ATPBD3 family protein MJ0485
 gi|1591188|gb|AAB98476.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 337

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 75/226 (33%), Gaps = 50/226 (22%)

Query: 8   SVRFFV--RSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HC 61
            V  F+    ++ P  I+ V +SGG DS+   + LH +   R    IK  A++VD     
Sbjct: 63  KVGRFINKHKIIAPRDIVIVGLSGGKDSL---LLLHLLEVYRRKYGIKLIAVTVDVNIGG 119

Query: 62  LRE--TAKDEVRYVSDVCSRLRIAH-------------SVVSWKNSKPQTGLMAAAREAR 106
           +R      + V+ +   C  L + H              +++  +   +     +    +
Sbjct: 120 IRPWKEDTEGVKLIKHHCEMLNVPHIILKNDLDVVELSEILTKHSKGMEFSPCFSCSVIK 179

Query: 107 YALISEHAKTINAT--------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
             L+ + AK I            +   H  DD  +T+     +        L  M     
Sbjct: 180 RHLLGKLAKEIAENENIPYEKVKLAYGHNLDDNSDTILANIFKGER-----LKFMRPLTR 234

Query: 159 YDLN-------------LWISRPFLRCRREDIRSFLLQRNISWCED 191
           +  N               I RP L     DI   L +  I + +D
Sbjct: 235 FKYNEVDYQSFKIPLEECIIIRPMLPILERDIIKALEECGIEYYKD 280


>gi|207093451|ref|ZP_03241238.1| hypothetical protein HpylHP_12006 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 124

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATL 121
           +++++SD+C    I H ++  + +       + ++   +     R   +   A       
Sbjct: 1   DLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNK 60

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +  AH  DD +E+ +M    + +     L  M      +  L + RP ++ R      F+
Sbjct: 61  VAIAHHLDDAVESFFMNFTYNGS-----LRSMPPIYRAENGLLVIRPLIKVREASSIHFV 115

Query: 182 LQRNIS 187
             +NI 
Sbjct: 116 TSQNIP 121


>gi|14601833|ref|NP_148374.1| hypothetical protein APE_2086 [Aeropyrum pernix K1]
 gi|5105785|dbj|BAA81097.1| conserved hypothetical protein [Aeropyrum pernix K1]
          Length = 331

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 77/243 (31%), Gaps = 19/243 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S +E      R +     +L AVSGG DS  LL  L  +     F      A+ +   + 
Sbjct: 33  SKVERAIMRHRLVGKGDRVLAAVSGGKDSSTLLAVLSRLSRRIGF---HVVALYIHLGIY 89

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------YALISEH 113
           E ++        + S+L +   V              A    R            +I+  
Sbjct: 90  EYSEKSREASIRLASQLDVPLIVFDLNEVLGAGIPELAKASKRPPCSVCGMVKRYVINAA 149

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS--GMCDTILYDLNLWISRPFLR 171
           A  +    +   H  DD         +    +    +S  G+    +  + +   RP   
Sbjct: 150 AVELGVDAVALGHNADDIA---VYNLKSFLNQDLEAISKLGVKTESIPGVAVGRVRPLYY 206

Query: 172 CRREDIRSFLLQRNISWCEDPSNT-DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
              ++   + L   + +  +     + R   V ++  V  ++     LK++    L  +V
Sbjct: 207 VYEKESFLYSLLAGLPFLHEECPFVERRQMEVELKETVNQLEDKRPGLKLQMVSKLAKRV 266

Query: 231 NNA 233
            + 
Sbjct: 267 EDY 269


>gi|312623404|ref|YP_004025017.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203871|gb|ADQ47198.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 301

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 24/193 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       ILV +SGG DSM L   L S            + + ++  + E +    + V
Sbjct: 42  KMFDKKDKILVVISGGKDSMALWHVLSS-------EGYNATGMYINLGIGEYSDKSQQVV 94

Query: 74  SDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLIM 123
            +   +  +   V   K              +    +     +  L ++ A       + 
Sbjct: 95  ENFAQKNGLELIVKDIKKEYGLDIYKLSKLLKRSTCSICGSIKRYLFNKVAYDGGFFAVA 154

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS---RPFLRCRREDIRSF 180
           T H  DD+  T+             G       +L   +  +    +P       +   +
Sbjct: 155 TGHNLDDEAATLLGNVL----SWEEGYLARQSPVLESTHPKLVKKAKPLYTLTERENLFY 210

Query: 181 LLQRNISWCEDPS 193
           +L   I +  D  
Sbjct: 211 VLINKIEFLHDEC 223


>gi|310658322|ref|YP_003936043.1| pp-loop family protein [Clostridium sticklandii DSM 519]
 gi|308825100|emb|CBH21138.1| PP-loop family protein [Clostridium sticklandii]
          Length = 290

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 59/192 (30%), Gaps = 30/192 (15%)

Query: 12  FVRSL------VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCLR 63
           F+++L           I VA+SGG DSM +      +     F KI F    I++D    
Sbjct: 40  FLKALNDYEMIQPGDRIAVAISGGKDSMLMAKLFQELQK---FSKIPFEVEYIAMDPGYH 96

Query: 64  ETAKDEVRYVSDVC----SRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHA 114
            +       + ++     + L I   V         +   Q        + R   +    
Sbjct: 97  PS-------IRELMMDNFNYLNIPIKVFETDIFKIADKIAQDYPCYMCAKMRRGALYNKT 149

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K +    +   H F+D +ET  +            L  +  T      L + RP      
Sbjct: 150 KELGCNKLALGHHFNDVIETTMLNML-YTGAFKTMLPRLKSTNF--EGLELIRPLYYVEE 206

Query: 175 EDIRSFLLQRNI 186
             I  F     I
Sbjct: 207 VFIERFTQTNGI 218


>gi|154249688|ref|YP_001410513.1| PP-loop domain-containing protein [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153624|gb|ABS60856.1| PP-loop domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 323

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 65/203 (32%), Gaps = 27/203 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   ++      +       +LVAVS G DS  +L AL  +  +     +K         
Sbjct: 30  FEKRVQKAINDFKMFQKEDKVLVAVSSGKDSSAVLYALKKLGYNVEGLFLKM-------G 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALI 110
               A + V  V  +   + +  ++          G    A   R          R   +
Sbjct: 83  RHTNAAERV--VKSLQESIGVPINIYDTTQHFHGLGTSEIASIVRRPVCSICGIVRRYWM 140

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--- 167
           +  A     ++++T H  DD+  T    +  ++  +          +L   +    R   
Sbjct: 141 NRFAVENGFSVLVTGHNLDDEA-TFLFGNILNWQVEYFA---RQWPVLEKTHEKFVRKAK 196

Query: 168 PFLRCRREDIRSFLLQRNISWCE 190
           P +     +  +++   NI + E
Sbjct: 197 PLIYVTERETYAYVFLNNIPFME 219


>gi|300122192|emb|CBK22766.2| unnamed protein product [Blastocystis hominis]
          Length = 202

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 16/132 (12%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L ++     +G +    +S+D  +       +  V    
Sbjct: 4   RGQRVAIGASGGKDSTVLAYVLSTLNKRYDYG-LDLYLLSIDEGIVGYRDGSLETVKQNS 62

Query: 78  SRLRIAHSVVSWK---------------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
              ++   + S+K               +    T   +     R   ++  A+  +A LI
Sbjct: 63  IDYQLPLVIYSYKELFGYTMDEIVTQTLDESGYTKACSYCGVFRRQALNIGAERSHADLI 122

Query: 123 MTAHTFDDQLET 134
            T H  DD  ET
Sbjct: 123 ATGHNADDNAET 134


>gi|167627923|ref|YP_001678423.1| ATPase [Francisella philomiragia subsp. philomiragia ATCC 25017]
 gi|241668475|ref|ZP_04756053.1| ATPase [Francisella philomiragia subsp. philomiragia ATCC 25015]
 gi|254877009|ref|ZP_05249719.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|205830354|sp|B0U092|TTCA2_FRAP2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|167597924|gb|ABZ87922.1| putative ATPase of the PP-loop superfamily [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254843030|gb|EET21444.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 266

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++  K    A+++D   +    +EV    +   
Sbjct: 33  GDKIMVCLSGGKDSYC-LLEMLLLLQQKAPIKFDIVAVNLD-QKQPGFPEEVLP--NYLK 88

Query: 79  RLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              I   ++                         R  ++ + A+  N T +   H  DD 
Sbjct: 89  TKNIEFHIIERDTYSVVKRVIPDGKTTCGLCSRMRRGILYDFAEQNNITKVALGHHRDDI 148

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +N      
Sbjct: 149 IETFFLNLFYNGSIKSMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSKLKNFPII-- 202

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 203 PCNLCGSQDNLQRVFIKDMLNRWENNNPERKNVIFKALS 241


>gi|320451026|ref|YP_004203122.1| Veg136 protein [Thermus scotoductus SA-01]
 gi|320151195|gb|ADW22573.1| Veg136 protein [Thermus scotoductus SA-01]
          Length = 321

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 23/204 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F+   E      R L     +LVAVSGG DS+ L   L  +  +     ++         
Sbjct: 30  FVKETERAIRRHRMLQPGERVLVAVSGGKDSLALWDVLWRLGYEAVGLHLQL-------G 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA---AREA--------RYALI 110
           +   ++  +           +   VV  + +        A    R A        RY +I
Sbjct: 83  IGAYSERSLEVTQSFAQDRGLELWVVDLRQAYGFGVPELAELSGRVACSACGLSKRY-II 141

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPF 169
           ++ A      ++ T H  DD+   ++         +   L      +     L    +PF
Sbjct: 142 NQVAVEGGFRVVATGHNLDDEAAVLFGNLM---NPQEDALVRQGPVLPEKPGLAARVKPF 198

Query: 170 LRCRREDIRSFLLQRNISWCEDPS 193
            R    ++ S+ L R I +  +  
Sbjct: 199 FRFSEREVLSYTLLRGIRYLHEEC 222


>gi|307206037|gb|EFN84130.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Harpegnathos saltator]
          Length = 1363

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 68/198 (34%), Gaps = 28/198 (14%)

Query: 6    IESVRFFVRSLVYPAHILVAVSG-GSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCL 62
            +E+++ F   +     +LV +S  G DS+ LL  LH          I  + SA +VD   
Sbjct: 1039 VEAMQEF-DMIRDNDRVLVCLSANGKDSLSLLHTLHQYRFYARSKGIDFEISAATVDAG- 1096

Query: 63   RETAKDEVRYVSDVCSRLRIAHSVV---------SWKNSKPQTGLMAAA-----REARYA 108
                  +   +      L + +            +  ++     + + A     R  R  
Sbjct: 1097 ----GADPLELMSYLKTLEVPYFYEEQVTDSSGANVDDNLLDASIASGACSFCDRSVRTQ 1152

Query: 109  LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             +   AK     ++      DD  E+  +         GM  +      +   +L + RP
Sbjct: 1153 -LYSLAKRNGYNVLALGQHLDDLAESFLISVFHG----GMLKTMKAHYYIRREDLRVIRP 1207

Query: 169  FLRCRREDIRSFLLQRNI 186
            F+  R + ++ F   + +
Sbjct: 1208 FIYVREKALKQFTESKKL 1225


>gi|260914014|ref|ZP_05920487.1| PP-loop family protein [Pasteurella dagmatis ATCC 43325]
 gi|260631647|gb|EEX49825.1| PP-loop family protein [Pasteurella dagmatis ATCC 43325]
          Length = 311

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 85/250 (34%), Gaps = 36/250 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS      L  +L+ R    I F  ++V+          H L      
Sbjct: 39  GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVNLDQKQPGFPEHIL------ 89

Query: 69  EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y++ +    +I       +V  K  + +T   +     R  ++   A  + AT I  
Sbjct: 90  -PEYLASIGVDYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 147

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183
            H  DD LET+++         G  L  M   ++ D    I  RP   C+ +DI  +   
Sbjct: 148 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYASA 202

Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +       P N        +R  V+  ++  D          F  ++  V + +      
Sbjct: 203 KQFPII--PCNLCGSQPNLQRQVVKEMLQTWDRQYPGRIETMFSAMQNIVPSHLCDTALF 260

Query: 241 YLTVHMRSII 250
                 R  I
Sbjct: 261 NFKDIKRGQI 270


>gi|319407230|emb|CBI80869.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 278

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 75/231 (32%), Gaps = 26/231 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58
            L  I         L      L+A+SGG DS        AL   L  R    +   A ++
Sbjct: 34  LLRHIRQALDDFAMLSSGKKWLIALSGGKDS----YGLLALLLDLKWRGLLPVDILACNL 89

Query: 59  DHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALI 110
           D   +       +++  D  +  +I   +       +            +     R   +
Sbjct: 90  DQG-QPN---FPKHILPDFLNYYQIPFRIEYQDTYSIVTDKLAQTQTYCSLCSRLRRGHL 145

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPF 169
              A+    + ++  H  DD LET  M            L+ M   ++ D  +L++ RP 
Sbjct: 146 YRIAREEGCSALVLGHHRDDVLETFLMNLFHGGR-----LAAMPGKLINDERDLFVLRPL 200

Query: 170 LRCRREDIRSFLLQRNISWCEDP-SNTDDRFERVRVRRFVRDIDLHALYLK 219
           +    ED+  F               + D  +R  +++ + DI+      K
Sbjct: 201 IYAAEEDMEKFSQAMQFPIIPCSLCGSQDGLQRNAMKKMLNDIERKMPGRK 251


>gi|54113861|gb|AAV29564.1| NT02FT0177 [synthetic construct]
          Length = 267

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 34  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   ++                         R  ++ + A+  N T +   H  DD 
Sbjct: 90  NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +       
Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242


>gi|56708129|ref|YP_170025.1| C32 tRNA thiolase [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670600|ref|YP_667157.1| hypothetical protein FTF1042 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134301940|ref|YP_001121909.1| ATPase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931637|ref|YP_001891621.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|224457220|ref|ZP_03665693.1| predicted ATPase of the PP-loop superfamily protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370615|ref|ZP_04986620.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874929|ref|ZP_05247639.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|81597459|sp|Q5NG17|TTCA1_FRATT RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|122970935|sp|Q14HG9|TTCA1_FRAT1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|205830353|sp|A4IXY7|TTCA1_FRATW RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|205830589|sp|B2SGI4|TTCA_FRATM RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|56604621|emb|CAG45675.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320933|emb|CAL09058.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
 gi|134049717|gb|ABO46788.1| putative ATPase of the PP-loop superfamily [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151568858|gb|EDN34512.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187712546|gb|ACD30843.1| predicted ATPase of the PP-loop superfamily [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|254840928|gb|EET19364.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159330|gb|ADA78721.1| putative ATPase of the PP-loop superfamily protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 267

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 34  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   ++                         R  ++ + A+  N T +   H  DD 
Sbjct: 90  NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +       
Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242


>gi|254372877|ref|ZP_04988366.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570604|gb|EDN36258.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 267

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 34  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   ++                         R  ++ + A+  N T +   H  DD 
Sbjct: 90  NKGVEFHIIERDTYSVVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +       
Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242


>gi|254369353|ref|ZP_04985365.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122303|gb|EDO66443.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 267

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 34  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   ++                         R  ++ + A+  N T +   H  DD 
Sbjct: 90  NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +       
Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242


>gi|325119231|emb|CBZ54785.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 1614

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 85   SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
                 ++   +  + +  R +R               ++ AH   D+LET+ M+  R   
Sbjct: 943  ETEEGRDVTKEENVRSDERASRAR-----DSGEPRAYVVMAHHAGDELETLVMKLLRGSH 997

Query: 145  EKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDD-RFERV 202
               +G       +      + + RPFL  ++  ++ ++     +W ED +N    ++ R 
Sbjct: 998  LTNLGGMSTVSPLSSRTPRFAVFRPFLSLQKAHLQRYVKALGGTWREDETNAMPTKYPRN 1057

Query: 203  RVRRFVRDI 211
             VR  +  +
Sbjct: 1058 AVRLRLLPL 1066



 Score = 38.4 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFG 49
           P   L+  SGGSDS  LL A   + S R+  
Sbjct: 407 PPLFLLCCSGGSDSTALLHAFARLFSPRAIA 437



 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 1/55 (1%)

Query: 42  VLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQ 95
           + +      +    +  DH  R  A   E   V  +C          +     P+
Sbjct: 550 LPAAAGALTLPIHVVYFDHAQRPEAAQKEAASVRRLCEFYGFPFHRCALIRKPPE 604


>gi|291533801|emb|CBL06914.1| Predicted ATPase of the PP-loop superfamily implicated in cell
          cycle control [Megamonas hypermegale ART12/1]
          Length = 105

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 7/81 (8%)

Query: 3  LSPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          +  IE V  F R          +L+A SGG DSM L+     +       K++      +
Sbjct: 13 MEIIERVENFAREYDLFKAHDKLLIACSGGPDSMALVDIFQKLSVK---YKLEIIVAHAE 69

Query: 60 HCLRETAK-DEVRYVSDVCSR 79
          H +R+ +  ++  YV + C +
Sbjct: 70 HGIRKESSLNDAWYVKNYCEQ 90


>gi|62262168|gb|AAX78050.1| unknown protein [synthetic construct]
          Length = 302

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 60  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 115

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   ++                         R  ++ + A+  N T +   H  DD 
Sbjct: 116 NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 175

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +       
Sbjct: 176 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 229

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 230 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 268


>gi|253997958|ref|YP_003050021.1| PP-loop domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253984637|gb|ACT49494.1| PP-loop domain protein [Methylovorus sp. SIP3-4]
          Length = 332

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 90/259 (34%), Gaps = 25/259 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVL---SDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           +LV +SGG DS     A+  +L    +R+    K  A+++D   +    ++V        
Sbjct: 61  VLVCMSGGKDS----HAMLMLLLALQERAPVDFKLIAMNLD-QKQPNFPEDVLPA--YLE 113

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L + + +V                   +     R  +I   AK + A  I   H  DD 
Sbjct: 114 KLGVEYRIVEADTYSIVKEKIPEGKTTCSLCSRLRRGIIYSTAKALGANKIALGHHRDDI 173

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC- 189
           ++T+++         G  L  M   +  +   + + RP   C  +DI ++          
Sbjct: 174 VQTLFLNMF-----FGSKLKAMPPKLSTNRGEFMVIRPLAYCAEKDIAAYARGMEFPIIP 228

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRS 248
            D   + +  +R +++  +   +          F+ +  V+ ++     +  +  +   S
Sbjct: 229 CDLCGSQENLQRQKIKDMLNAWEREQPGRINNIFRAITNVEPSHLADTDLYDFKGLTSAS 288

Query: 249 IIAISQDILNIDSTLLFYL 267
           +        +I       L
Sbjct: 289 LEDEDPLFGDIAKEEQPAL 307


>gi|254374332|ref|ZP_04989814.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151572052|gb|EDN37706.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 267

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 77/219 (35%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 34  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   +       V  +               R  ++ + A+  N T +   H  DD 
Sbjct: 90  NKGVEFYIIERDTYSVVTRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +       
Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242


>gi|325185131|emb|CCA19622.1| unnamed protein product putative [Albugo laibachii Nc14]
 gi|325188334|emb|CCA22872.1| unnamed protein product putative [Albugo laibachii Nc14]
          Length = 996

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 16/223 (7%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +     +L+ VSGG D    L+ +   L  R+  +   +  +VD    +TA  +   +
Sbjct: 752 KMIQNGDRLLLGVSGGKD-SLSLLHILLHLQKRAPIEFDLACATVD---PQTASYDPSPL 807

Query: 74  SDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            D    L + +       +   K     + + +     +  L+ +  +T     ++    
Sbjct: 808 KDYMKALGVEYHYLSENIMERAKCELNGSSICSYCSRMKRGLLYQCCRTNGFNKLVLGQH 867

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD  E+  M    +   + M  +   D      N+ I RP +  R   ++ F     + 
Sbjct: 868 LDDIAESFVMSLFHNGQLRTMKANYWND----ARNIQIIRPLIYVREFLLQKFASDARLP 923

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
              +  N    FE+ + R  V+ +      L  + F  +R  +
Sbjct: 924 VINE--NCPACFEQPKERARVKKLLAQEETLLPQLFHCIRRAL 964


>gi|319898919|ref|YP_004159012.1| hypothetical protein BARCL_0753 [Bartonella clarridgeiae 73]
 gi|319402883|emb|CBI76434.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 272

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 28/232 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISV 58
            L  I         L      L+A+SGG DS        AL   L  R    +   A ++
Sbjct: 28  LLRHIRQALDDFSMLSSGKKWLIALSGGKDS----YGLLALLLDLKWRGLLPVDILACNL 83

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALIS 111
           +   +         + D  +  +I + +       +            +     R   + 
Sbjct: 84  N---QGQPGFPEHILPDFLNYHQIPYRIEYQDTYSIVTDKLTQTQTYCSLCSRLRRGHLY 140

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFL 170
             A+    + ++  H  DD LET +M            L+ M   ++ D   L++ RP +
Sbjct: 141 RIAREEECSAVILGHHRDDVLETFFMNLFHGGR-----LAAMPGKLINDEGDLFVLRPLV 195

Query: 171 RCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLK 219
               +D+  F           P N     D  +R  +++ + DI+      K
Sbjct: 196 YAAEKDMEKFSQAMQFPIV--PCNLCGNQDSLQRNAMKKMLDDIERKMPGRK 245


>gi|313200025|ref|YP_004038683.1| pp-loop domain-containing protein [Methylovorus sp. MP688]
 gi|312439341|gb|ADQ83447.1| PP-loop domain protein [Methylovorus sp. MP688]
          Length = 310

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 25/259 (9%)

Query: 22  ILVAVSGGSDSMGLLIALHSVL---SDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           +LV +SGG DS     A+  +L    +R+    K  A+++D   +    +EV        
Sbjct: 39  VLVCMSGGKDS----HAMLMLLLALQERAPVDFKLIAMNLD-QKQPNFPEEVLPA--YLE 91

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           +L + + +V                   +     R  +I   AK + A  I   H  DD 
Sbjct: 92  KLGVEYRIVEADTYSIVKEKIPEGKTTCSLCSRLRRGIIYSTAKALGANKIALGHHRDDI 151

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISWC- 189
           ++T+++         G  L  M   +  +   + + RP   C  +DI ++          
Sbjct: 152 VQTLFLNMF-----FGSKLKAMPPKLSTNRGEFMVIRPLAYCAEKDIAAYARGMEFPIIP 206

Query: 190 EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHMRS 248
            D   + +  +R +++  +   +          F+ +  V+ ++     +  +  +   S
Sbjct: 207 CDLCGSQENLQRQKIKDMLNAWEREQPGRINNIFRAITNVEPSHLADTDLYDFKGLTSAS 266

Query: 249 IIAISQDILNIDSTLLFYL 267
           +        +I       L
Sbjct: 267 LEDEDPLFGDIAKEEQPAL 285


>gi|296108939|ref|YP_003615888.1| PP-loop domain protein [Methanocaldococcus infernus ME]
 gi|295433753|gb|ADG12924.1| PP-loop domain protein [Methanocaldococcus infernus ME]
          Length = 290

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            + L     ILV +SGG DS      L  +               ++  +   ++  +  
Sbjct: 42  FKMLSKDEKILVPISGGKDSHAAAYILKKL-------GYDIELFHINLGISNFSEISLEK 94

Query: 73  VSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           V ++ + +     +V+ K             +  +       RY L+++         I+
Sbjct: 95  VKELSNFINAKLHIVNLKEITGKTIEDVKGKKCSICGI--TKRY-LMNKFGYEHGFDTIV 151

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H  DD+L +  + +   +  + +    +     +D  L   + F     + I+++   
Sbjct: 152 TGHNMDDEL-SFMLNNLLGWNIRYLA-KHLPVLPAHDKFLKKVKIFYEIEEKYIKAYADA 209

Query: 184 RNISW 188
            NI +
Sbjct: 210 LNIPY 214


>gi|328676039|gb|AEB28714.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Francisella cf.
           novicida 3523]
          Length = 266

 Score = 73.8 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 82/243 (33%), Gaps = 23/243 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVRYVSDVC 77
              I+V +SGG DS      L  +L  +    I F  I+V+    +    +EV    +  
Sbjct: 33  GDKIMVCLSGGKDSYC---LLEMLLLLQKKAPISFDIIAVNLDQKQPGFPEEVLP--NYL 87

Query: 78  SRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
               I   ++                         R  ++ + A+  N T +   H  DD
Sbjct: 88  KNKGIEFYIIERDTYSVVKRVIPDGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDD 147

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +ET ++    + + K M    + D    D    + RP      ++   +   +      
Sbjct: 148 IIETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII- 202

Query: 191 DPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVNNAVAMLIPKYLTVHM 246
            P N     D  +RV ++  +   + +    K   F+ L  +  +  +   +  ++ +  
Sbjct: 203 -PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALSNISPSQMLDKELFDFVNISK 261

Query: 247 RSI 249
           R I
Sbjct: 262 RDI 264


>gi|61657492|emb|CAI44404.1| hypothetical protein [Thermotoga sp. KOL6]
          Length = 304

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 60/198 (30%), Gaps = 26/198 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++++ F R     + IL+AVSGG DS+ L   L  +  D     I+              
Sbjct: 36  KAIKKF-RMFKKDSKILIAVSGGKDSVSLWHILKKLGYDVDALFIRA-------GKSAMV 87

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISEHAK 115
           +     V      L     VV              +   R          R  L+++ A 
Sbjct: 88  QKAQEIVEKNAEILNTKLHVVDATQYFDGLSTQEISIILRRPVCSICGVVRRYLMNKFAY 147

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRC 172
                +++T H  +D+   +             G       +L   +  +     P +  
Sbjct: 148 ENGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPLVFN 203

Query: 173 RREDIRSFLLQRNISWCE 190
             EDI+ +     I   E
Sbjct: 204 YEEDIKLYAKLNEIPHLE 221


>gi|257065750|ref|YP_003152006.1| PP-loop domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256797630|gb|ACV28285.1| PP-loop domain protein [Anaerococcus prevotii DSM 20548]
          Length = 269

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 86/241 (35%), Gaps = 23/241 (9%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA--ISVDHCL 62
           I++V+ F  SL+     + VA+SGG DS+ L   +  +       ++KF    IS+D   
Sbjct: 23  IKAVKEF--SLINEGDKVAVAISGGKDSLILAKLIEEL---HKHSRVKFDVEYISMDPGY 77

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL------MAAAREARYALISEHAKT 116
               +D    +    + L I  ++   +  +    +             R   +   AK 
Sbjct: 78  DNENRD---LLEKNLAYLNIDGTIYDSEVFEVAETITKGDYPCYMCARMRRGFLYAKAKE 134

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    +   H  +D +ET  M        K M    +        ++ + RP      +D
Sbjct: 135 LGCNKVALGHHMNDVIETTMMNVLYAGNFKTMKPKLIAQNF---EDMELIRPLYYLHEDD 191

Query: 177 I---RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           I   R ++    ++     + + + + R +++  + ++      ++    +       + 
Sbjct: 192 IKRWRDYVALSALNCACTVTKSSESYTRKKIKELIAELKKDNPEVEKSILRSAENVNCDM 251

Query: 234 V 234
           V
Sbjct: 252 V 252


>gi|33152734|ref|NP_874087.1| putative ATPase [Haemophilus ducreyi 35000HP]
 gi|33148958|gb|AAP96476.1| putative ATPase [Haemophilus ducreyi 35000HP]
          Length = 343

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 34/227 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAK 67
               ++V +SGG DS      L  +L+ +    I F  ++V+          H L     
Sbjct: 70  AGDKVMVCLSGGKDS---YTLLDILLNLKLSAPINFDIVAVNLDQKQPGFPEHIL----- 121

Query: 68  DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
               Y++ +    +I       +V  K  + +T   +     R  ++   A  + AT I 
Sbjct: 122 --PEYLASIGVEYKIVQENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIA 178

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD LET+++    +   K    S     I  D    + RP   C+ +DI  +   
Sbjct: 179 LGHHRDDMLETLFLNMFYNGKLK----SMPPKLISDDAKHIVIRPLAYCKEKDIEKYAEA 234

Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +       P N        +R  V+  +++ D          F  L+
Sbjct: 235 KQFPII--PCNLCGSQPNLQRQVVKEMLQNWDRQYPGRIETMFSALQ 279


>gi|328950002|ref|YP_004367337.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328450326|gb|AEB11227.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 328

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + +     +LVA+SGG DS+ L   L  +  + +   I+         + E ++      
Sbjct: 42  KMIREGDRVLVAISGGKDSLALWEVLTRLGYEATGLHIQL-------GIGEYSERAYEVT 94

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREA--------RYALISEHAKTINATLI 122
           +       +   VV    S          A  R A        RY L++E A+     ++
Sbjct: 95  TRFARERGLPLIVVDLAESYGLGVPELSLATGRVACSGCGLSKRY-LMNEVAREEGFNVV 153

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFL 181
            T H  DD+   +     R    +   L      +     L    +PF      ++ S+ 
Sbjct: 154 ATGHNLDDEAAVLLGNVLR---WQTDALPRQGPVLPEREGLARRIKPFYLFTEREVASYA 210

Query: 182 LQRNISW 188
           L R I++
Sbjct: 211 LLRRIAY 217


>gi|205830659|sp|Q7VKY7|TTCA_HAEDU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 316

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 34/227 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAK 67
               ++V +SGG DS      L  +L+ +    I F  ++V+          H L     
Sbjct: 43  AGDKVMVCLSGGKDS---YTLLDILLNLKLSAPINFDIVAVNLDQKQPGFPEHIL----- 94

Query: 68  DEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
               Y++ +    +I       +V  K  + +T   +     R  ++   A  + AT I 
Sbjct: 95  --PEYLASIGVEYKIVQENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIA 151

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD LET+++    +   K    S     I  D    + RP   C+ +DI  +   
Sbjct: 152 LGHHRDDMLETLFLNMFYNGKLK----SMPPKLISDDAKHIVIRPLAYCKEKDIEKYAEA 207

Query: 184 RNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +       P N        +R  V+  +++ D          F  L+
Sbjct: 208 KQFPII--PCNLCGSQPNLQRQVVKEMLQNWDRQYPGRIETMFSALQ 252


>gi|323348754|gb|EGA82995.1| Ncs6p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 274

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 16/187 (8%)

Query: 39  LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN------- 91
           +  +L+DR    I+   +S+D  +     D +  V     +  +   + S+K+       
Sbjct: 1   MLKLLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKRNQQQYGLPLEIFSFKDLYDWTMD 60

Query: 92  ----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147
                             R   +   A  +  + ++T H  DD  ETV M   R    + 
Sbjct: 61  EIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVTGHNADDMAETVLMNILRGDVAR- 119

Query: 148 MGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
             L      I       I R  PF    +++I  +     + +            R   R
Sbjct: 120 --LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAHYMKLDYFSTECTYAPEAFRGTAR 177

Query: 206 RFVRDID 212
            ++++++
Sbjct: 178 EYMKNLE 184


>gi|207345529|gb|EDZ72322.1| YGL211Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 205

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 16/187 (8%)

Query: 39  LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN------- 91
           +  +L+DR    I+   +S+D  +     D +  V     +  +   + S+K+       
Sbjct: 1   MLKLLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKRNQQQYGLPLEIFSFKDLYDWTMD 60

Query: 92  ----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147
                             R   +   A  +  + ++T H  DD  ETV M   R    + 
Sbjct: 61  EIVSVAGIRNSCTYCGVFRRQSLDRGAAKLGISHVVTGHNADDMAETVLMNILRGDVAR- 119

Query: 148 MGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
             L      I       I R  PF    +++I  +     + +            R   R
Sbjct: 120 --LEKSTAIITQSSGSPIKRSKPFKYSYQKEIVLYAHYMKLDYFSTECTYAPEAFRGTAR 177

Query: 206 RFVRDID 212
            ++++++
Sbjct: 178 EYMKNLE 184


>gi|307169701|gb|EFN62277.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Camponotus floridanus]
          Length = 1435

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 25/201 (12%)

Query: 6    IESVRFFVRSLVYPAHILVAVSG-GSDSMGLLIALHSVLSDRSFGKI--KFSAISVDHCL 62
            +E+++ F   +     +LV +S  G DS+ LL  LH          I  +  A SVD   
Sbjct: 1120 VEAMQEF-DMIRDNDRVLVCLSANGKDSLSLLHTLHQYRFYARSKGIDFEIGAASVDMG- 1177

Query: 63   RETAKDEVRYVSDVCSRLRIAHS------------VVSWKNSKPQTGLMAAAREARYALI 110
                  +   +      L + +             V +  ++   +G  +   ++    +
Sbjct: 1178 ----GSDPLEIMSYLKALDVPYFYEEHMTDSANTNVDNPLDASVASGTCSFCDKSVRTQL 1233

Query: 111  SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
               AK     ++      DD  E+  +        K    +      +   +L + RPF+
Sbjct: 1234 YSLAKRNGYNVLALGQHLDDLTESFLISVLHGGILK----TMKAHYYIRREDLRVVRPFI 1289

Query: 171  RCRREDIRSFLLQRNISWCED 191
              R + +R F   + +   +D
Sbjct: 1290 YVREKALRQFTESKKLPISQD 1310


>gi|218887418|ref|YP_002436739.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758372|gb|ACL09271.1| PP-loop domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 311

 Score = 73.4 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 22/182 (12%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDV 76
           +   ILVA+SGG DS+ L++ L  +  D +   I  +           +    R  V   
Sbjct: 46  HDDRILVALSGGKDSLSLMLELSRLGYDVTGLHIDLAI--------PGSSPAARGVVERF 97

Query: 77  CSRLRIAHSV---------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           C +  +   V         +    ++    + +A  + +    ++ A   N T++ T H 
Sbjct: 98  CEKHGLNLIVKEMGAEGLAIPDVKARLNRPVCSACGKIKRYFFNKTALDENFTVLATGHN 157

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRREDIRSFLLQRNI 186
            DD++  ++  + R        LS     +  D       +P  R    +  ++     I
Sbjct: 158 LDDEIARLFSNTLR---WDVAYLSDQGPDLAADGGFARKVKPLWRLSEFETANYAFLMGI 214

Query: 187 SW 188
             
Sbjct: 215 EH 216


>gi|190150300|ref|YP_001968825.1| hypothetical protein APP7_1031 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263643|ref|ZP_07545254.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|254789865|sp|B3GXW8|TTCA_ACTP7 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|189915431|gb|ACE61683.1| hypothetical protein APP7_1031 [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871020|gb|EFN02753.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 318

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 33/192 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS      L  +L+ +    I F  ++V+          H L      
Sbjct: 44  GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVNLDQKQPGFPEHTL------ 94

Query: 69  EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +    +I       +V  K  + +T   +     R  ++   A  + AT I  
Sbjct: 95  -PEYLESIGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 152

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183
            H  DD LET+++         G  L  M   ++ D    I  RP   C+ +DI  +   
Sbjct: 153 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQA 207

Query: 184 RNISWCEDPSNT 195
           +       P N 
Sbjct: 208 KQFPII--PCNL 217


>gi|307261460|ref|ZP_07543131.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868855|gb|EFN00661.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 318

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 33/192 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS      L  +L+ +    I F  ++V+          H L      
Sbjct: 44  GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVNLDQKQPGFPEHTL------ 94

Query: 69  EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +    +I       +V  K  + +T   +     R  ++   A  + AT I  
Sbjct: 95  -PEYLESIGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 152

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183
            H  DD LET+++         G  L  M   ++ D    I  RP   C+ +DI  +   
Sbjct: 153 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQA 207

Query: 184 RNISWCEDPSNT 195
           +       P N 
Sbjct: 208 KQFPII--PCNL 217


>gi|325845752|ref|ZP_08169016.1| PP-loop family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481890|gb|EGC84921.1| PP-loop family protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 220

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 13/189 (6%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +++V+ +   +     +  A+SGG DS+ L   L   L   S    +   I +D    
Sbjct: 21  KFVKAVKKY-ELINEGDKVACAISGGKDSL-LTAKLVEELHKHSNVNFEVEYICMDPGYD 78

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTIN 118
           +  +D    +      L I   +     ++ S+  +G          R   +   AK + 
Sbjct: 79  KENRD---LLEKNLKYLNIPAKIFDSDVFEISEKISGDYPCYMCARMRRGFLYAKAKELG 135

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +   H  +D +ET  M        K M    M        N+ + RP      +D+ 
Sbjct: 136 CNKVALGHHMNDAVETTLMNVLYAGNYKTMKPKLMAQNF---DNMELIRPMYFIEEKDVI 192

Query: 179 SFLLQRNIS 187
           ++     + 
Sbjct: 193 AWRDYVGLD 201


>gi|89256381|ref|YP_513743.1| C32 tRNA thiolase [Francisella tularensis subsp. holarctica LVS]
 gi|115314827|ref|YP_763550.1| hypothetical protein FTH_1022 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502470|ref|YP_001428535.1| hypothetical protein FTA_1103 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367718|ref|ZP_04983739.1| hypothetical protein FTHG_00992 [Francisella tularensis subsp.
           holarctica 257]
 gi|290953804|ref|ZP_06558425.1| hypothetical protein FtulhU_05771 [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312815|ref|ZP_06803547.1| hypothetical protein FtulhU_05768 [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122325157|sp|Q0BLX1|TTCA2_FRATO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|122500727|sp|Q2A3F9|TTCA2_FRATH RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|205830355|sp|A7NC76|TTCA2_FRATF RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 2
 gi|89144212|emb|CAJ79482.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129726|gb|ABI82913.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253529|gb|EBA52623.1| hypothetical protein FTHG_00992 [Francisella tularensis subsp.
           holarctica 257]
 gi|156253073|gb|ABU61579.1| PP-loop family protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 267

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 76/219 (34%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 34  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   ++                         R  ++ + A+  N T +   H  DD 
Sbjct: 90  NKGVEFHIIERDTYSIVKRVIPEGKTTCGLCSRMRRGILYDFAEENNVTKVALGHHRDDI 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +       
Sbjct: 150 IETFFLNLFYNGSIKAMPTKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242


>gi|330948475|gb|EGH48735.1| tRNA(Ile)-lysidine synthetase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 79

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRF 207
            GL+ M D  +      + RP L   R+ +  +  +  ++W EDPSN D +F R  +R  
Sbjct: 1   RGLAAMPDQRVLGRG-HLLRPLLDVSRKQLEDYAHRHGLNWIEDPSNDDQQFSRNFLRSQ 59

Query: 208 VRDIDLHAL 216
           V  +  +A+
Sbjct: 60  VLPLLTYAM 68


>gi|146295177|ref|YP_001178948.1| PP-loop domain-containing protein [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408753|gb|ABP65757.1| PP-loop domain protein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 303

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 65/221 (29%), Gaps = 21/221 (9%)

Query: 14  RSLVYPAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +       IL AV SGG DSM L   L               A+ ++  + E +    + 
Sbjct: 42  KMFDKKDKIL-AVISGGKDSMALWDVLVK-------EGYNVVAMYINLGIGEYSNRSQKV 93

Query: 73  VSDVCSRLRIAHSVVSWKNSKP----------QTGLMAAAREARYALISEHAKTINATLI 122
           V    S+  +   V   K              +    +     +  L ++ A     + +
Sbjct: 94  VESFASKNNLPLIVKDIKKEFGLDIYKLSKTLKRSPCSICGSIKRYLFNKVAYDGGFSAV 153

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H  DD+  T+       + E  +          +   +   +P       +   ++L
Sbjct: 154 ATGHNLDDEAATLLGNVL-SWEEGYLARQAPVLPQTHPKLIKKVKPLYSLTERENLYYVL 212

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKF 223
              I +  +         R  + + V +          ++F
Sbjct: 213 LNKIEFLHEECPHSVG-ARSILFKEVLNKLEEESPGTKQRF 252


>gi|259157176|gb|ACV96799.1| TilS [uncultured bacterium]
          Length = 86

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 86  VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145
           V   + ++   G+ A AR+ARY   +     +   +++TA   DDQ ET  +  +     
Sbjct: 1   VERVQLAQEGLGIEAQARQARYQAFARTL--LPGEVLVTAQHLDDQCETFLLALKPGSGP 58

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              GLS M +   +     + RP L   R +
Sbjct: 59  --AGLSAMAEVSEFA-GTRLIRPLLARTRGE 86


>gi|156094549|ref|XP_001613311.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802185|gb|EDL43584.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1060

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +L+   H  +D  ETV     R    K   L G+     +  +  I RPF++  + ++  
Sbjct: 496 SLVFVGHHRNDNNETVLFHFLRGAFIK--NLRGIKFVTAF-KDCLIYRPFIKLSKINLYM 552

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
           ++   N SW  D SN      R  +R  V  
Sbjct: 553 YMQIVNKSWRFDTSNQSLSTSRNFIRHVVIP 583



 Score = 38.4 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 16/82 (19%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS----------------KPQ 95
             + +  +H  RE    E  +V ++C R ++       +                  K  
Sbjct: 325 NVTVVYCNHKTREDCVKEKNFVKNICRRHKLRFRTKVLRRGWRAEQEGAGQKNKPHHKRG 384

Query: 96  TGLMAAAREARYALISEHAKTI 117
              +  ARE R  +  +  + +
Sbjct: 385 NNFLLLAREWRRHVYVQLTRQL 406


>gi|330897080|gb|EGH28560.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 164

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 16/151 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRET 65
           E+V  F   +     ++V +SGG DS  +L  L  +        IKF  ++V+    +  
Sbjct: 21  EAVADF-NMIEEGDKVMVCLSGGKDSYTMLDVLMHLQK---VAPIKFDIVAVNMDQKQPG 76

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
                 +V       L I + +V                   +     R   +   A  I
Sbjct: 77  ---FPEHVLPAYLKELGIEYHIVEKDTYSVVKELVPEGKTTCSLCSRLRRGTLYTFADEI 133

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
            AT +   H  DD +ET ++    + + K M
Sbjct: 134 GATKMALGHHRDDIVETFFLNMFFNGSLKAM 164


>gi|325293258|ref|YP_004279122.1| PP-loop domain protein [Agrobacterium sp. H13-3]
 gi|325061111|gb|ADY64802.1| PP-loop domain protein [Agrobacterium sp. H13-3]
          Length = 321

 Score = 73.0 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 77/209 (36%), Gaps = 18/209 (8%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCS 78
              LV +SGG DS   L+AL   L  R    ++  A ++D   +       ++V  +  +
Sbjct: 79  KRWLVGLSGGKDS-YGLLALLLDLKWRGLLPVELIACNLD-QGQPN---FPKHVLPEYLA 133

Query: 79  RLRIAHSVV------SWKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
           ++ +AH +         K   P  G   +     R   +   A+      ++  H  +D 
Sbjct: 134 KIGVAHRIEYRDTYSVVKEKVPAGGTYCSLCSRLRRGNLYRIAREEGCDALVLGHHREDI 193

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-E 190
           LET +M         GM    M D    + +L + RP   C  ED+  F           
Sbjct: 194 LETFFMNFFHGGRLAGMPAKLMND----EGDLMVLRPLAYCAEEDMAKFAAAMEFPIIPC 249

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLK 219
           D   + D  +R  ++  + DI+      K
Sbjct: 250 DLCGSQDGLQRNAMKEMLADIERRMPGRK 278


>gi|47202707|emb|CAF87749.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 254

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 22/158 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  L   +  +L++R    +    +SVD  +     D V  V     +  
Sbjct: 53  VGIAASGGKDSTVLAHVMK-LLNERYNYGLTLMLLSVDEGITGYRDDSVETVKRNQQQYE 111

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
           +   +V  + +                 +               H  DD  ETV M   R
Sbjct: 112 LPLKIVVLRGAL---------------WLDNGCHRE------AGHNADDVAETVLMNVLR 150

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
                G+          Y+  + +   F +   +D+ S
Sbjct: 151 ASEGDGVVPRCKPLKYAYEKEIVLYAYFKKTFLKDLES 188


>gi|297618556|ref|YP_003706661.1| PP-loop domain-containing protein [Methanococcus voltae A3]
 gi|297618616|ref|YP_003706721.1| PP-loop domain-containing protein [Methanococcus voltae A3]
 gi|297377533|gb|ADI35688.1| PP-loop domain protein [Methanococcus voltae A3]
 gi|297377593|gb|ADI35748.1| PP-loop domain protein [Methanococcus voltae A3]
          Length = 393

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 70/240 (29%), Gaps = 73/240 (30%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKDEV----RY 72
            I+V +SGG DS+ L+  L      R    I  +AI+    ++   R     E     + 
Sbjct: 107 KIIVGLSGGKDSIALMHLL---EPYRRKFGISITAITADLNIN-GKRPWGNIEENPNLKK 162

Query: 73  VSDVCSRLRIAHSVVSWKNS-------------------KPQTGLMAAAREARYALISEH 113
           V   C  L I H ++S   +                    P        R      I EH
Sbjct: 163 VHKQCENLNIPHKIISHCGNVVEMSNYLTENAKIKGMEYSPCFSCSLTRRHIITNYIHEH 222

Query: 114 A--------------------------------KTINATLIMTAHTFDDQLETVYMRSQR 141
                                                   +   HT +D  +T+     +
Sbjct: 223 CNNNYNTYTNTNNTNNNNGNDENRENRENNRKNAEYKNYKVAFGHTLEDNSDTILANMFK 282

Query: 142 DYAEKGMG-------LSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCED 191
               K +        ++   +   +DL+L    I RP L  + E I   L +  + + +D
Sbjct: 283 GDKIKSLAPIKKFTPMNISFEDFGFDLDLKPCTIIRPILAIKEEKIIKALEECGLWYYKD 342


>gi|208779311|ref|ZP_03246657.1| hypothetical protein FTG_1605 [Francisella novicida FTG]
 gi|208745111|gb|EDZ91409.1| hypothetical protein FTG_1605 [Francisella novicida FTG]
          Length = 267

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 34  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89

Query: 79  RLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   ++                         R  ++ + A+  + T +   H  DD 
Sbjct: 90  NKGVEFHIIERDTYSVVKRVIPEGKTTCGLCSRMRRGILYDFAEENSVTKVALGHHRDDI 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +       
Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242


>gi|170717574|ref|YP_001784660.1| C32 tRNA thiolase [Haemophilus somnus 2336]
 gi|205830595|sp|B0UU61|TTCA_HAES2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|168825703|gb|ACA31074.1| PP-loop domain protein [Haemophilus somnus 2336]
          Length = 314

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 33/192 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS      L  +L+ R    I F  ++V+          H L      
Sbjct: 41  GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVNLDQKQPGFPEHIL------ 91

Query: 69  EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +    +I       +V  K  + +T   +     R  ++   A  + AT I  
Sbjct: 92  -PEYLKSISVDYKIVAENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 149

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183
            H  DD LET+++         G  L  M   ++ D    I  RP   C+ +DI  + + 
Sbjct: 150 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVA 204

Query: 184 RNISWCEDPSNT 195
           +       P N 
Sbjct: 205 KQFPII--PCNL 214


>gi|113461006|ref|YP_719073.1| C32 tRNA thiolase [Haemophilus somnus 129PT]
 gi|122945296|sp|Q0I3K3|TTCA_HAES1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|112823049|gb|ABI25138.1| tRNA s(2)C-32 sulfurtransferase [Haemophilus somnus 129PT]
          Length = 314

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/192 (21%), Positives = 70/192 (36%), Gaps = 33/192 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS      L  +L+ R    I F  ++V+          H L      
Sbjct: 41  GDKVMVCLSGGKDS---YTLLDILLNLRLNAPIHFDIVAVNLDQKQPGFPEHIL------ 91

Query: 69  EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +    +I       +V  K  + +T   +     R  ++   A  + AT I  
Sbjct: 92  -PEYLKSISVDYKIVAENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 149

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183
            H  DD LET+++         G  L  M   ++ D    I  RP   C+ +DI  + + 
Sbjct: 150 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYAVA 204

Query: 184 RNISWCEDPSNT 195
           +       P N 
Sbjct: 205 KQFPII--PCNL 214


>gi|118497512|ref|YP_898562.1| ATPase [Francisella tularensis subsp. novicida U112]
 gi|195536206|ref|ZP_03079213.1| hypothetical protein FTE_1165 [Francisella tularensis subsp.
           novicida FTE]
 gi|205830352|sp|A0Q6E3|TTCA1_FRATN RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA 1
 gi|118423418|gb|ABK89808.1| predicted ATPase of the PP-loop superfamily [Francisella novicida
           U112]
 gi|194372683|gb|EDX27394.1| hypothetical protein FTE_1165 [Francisella tularensis subsp.
           novicida FTE]
          Length = 267

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 77/219 (35%), Gaps = 20/219 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I+V +SGG DS   L+ +  +L  ++    +  A+++D   +    +EV    +   
Sbjct: 34  GDKIMVCLSGGKDSYC-LLEMLLLLQKKAPISFEIIAVNLD-QKQPGFPEEVLP--NYLK 89

Query: 79  RLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
              +   +       V  +               R  ++ + A+  + T +   H  DD 
Sbjct: 90  NKGVEFHIIQRDTYSVVKRVIPEGKTTCGLCSRMRRGILYDFAEENSVTKVALGHHRDDI 149

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +ET ++    + + K M    + D    D    + RP      ++   +   +       
Sbjct: 150 IETFFLNLFYNGSIKAMPAKLLSD----DKRNIVIRPLAFVSEKETLEYSQLKEFPII-- 203

Query: 192 PSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           P N     D  +RV ++  +   + +    K   F+ L 
Sbjct: 204 PCNLCGSQDNLQRVFIKDMLNRWEQNNPERKNVIFKALS 242


>gi|262066347|ref|ZP_06025959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379911|gb|EFE87429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 343

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 25/188 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +  ++     VC R
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHL-EESSKDIEDAKKVCDR 53

Query: 80  LRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKTINATLIM 123
           L I H VV+ +                S            E ++ ++ E A    A  + 
Sbjct: 54  LGIIHEVVNIRKNFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEVANKYKADYVA 113

Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           T H T  +  ET      +         S M   +  +    +  P     +++IR   L
Sbjct: 114 TGHYTSVEYSETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEIREIAL 173

Query: 183 QRNISWCE 190
           +  +   +
Sbjct: 174 KIGLEVHD 181


>gi|212695922|ref|ZP_03304050.1| hypothetical protein ANHYDRO_00455 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677045|gb|EEB36652.1| hypothetical protein ANHYDRO_00455 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 221

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 13/189 (6%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +++V+ +   +     +  A+SGG DS+ L   L   L   S    +   I +D    
Sbjct: 22  KFVKAVKKY-ELINEGDKVACAISGGKDSL-LTAKLVEELHKHSKVNFEVEYICMDPGYD 79

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTG--LMAAAREARYALISEHAKTIN 118
           +  +D    +      L I   +     ++ S+  +G          R   +   AK + 
Sbjct: 80  KENRD---LLEKNLKYLNIPAKIFDSDVFEISEKISGDYPCYMCARMRRGFLYAKAKELG 136

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +   H  +D +ET  M        K M    M         + + RP      +D+ 
Sbjct: 137 CNKVALGHHMNDAIETTLMNVLYAGNYKTMKPKLMAQNF---DGMELIRPMYFIEEKDVI 193

Query: 179 SFLLQRNIS 187
           ++     + 
Sbjct: 194 AWRDYVGLD 202


>gi|46143516|ref|ZP_00135037.2| COG0037: Predicted ATPase of the PP-loop superfamily implicated in
           cell cycle control [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 293

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS      L  +L+ +    I F  ++V+  L +       ++  +  
Sbjct: 44  GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVN--LDQKQPGFPEHILPEYL 98

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 99  ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 158

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  L  M   ++ D    I  RP   C+ +DI  +   +     
Sbjct: 159 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQAKQFPII 213

Query: 190 EDPSNT 195
             P N 
Sbjct: 214 --PCNL 217


>gi|221502473|gb|EEE28200.1| cell cycle protein mesj, putative [Toxoplasma gondii VEG]
          Length = 1195

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 35/237 (14%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            ++ AH   D++ET+ M+  R      +G +S +           + RPFL  ++  +  
Sbjct: 626 YVVMAHHAGDEMETLLMKLLRGAHITNLGGMSAVSGLSSQTPRFAVFRPFLSLQKAQLHR 685

Query: 180 FLLQRNISWCEDPSNTDD-RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
           +L     SW ED +N    ++ R  V   +    + A   + K     +  V  A ++ I
Sbjct: 686 YLKALGGSWLEDETNALPEKYPRNAV---LSPSAVEADASRGK----AQGAVPRAGSLGI 738

Query: 239 PKYLTVHMRSIIAISQDILNID------------STLLFYLLRVSAAICGGQISLPGYRS 286
                       A S+  L+                 L    + ++ +   +   P    
Sbjct: 739 SPVFREERGGEAARSRVPLSAPVWAEDCREVHSEGDALEDAEKAASVVSANERGQPSRER 798

Query: 287 --MERVMLFLKSGKRGCVSIGR---VVIDRRANFL---------WITRAVRNLPTLI 329
              + ++  +          G      + RRA+ L         W+ R   N    +
Sbjct: 799 NDAQALLTRIAEAAASIFCKGSEPTHALFRRASGLARQSAALRDWVDREASNWEERV 855


>gi|322514717|ref|ZP_08067743.1| PP-loop family protein [Actinobacillus ureae ATCC 25976]
 gi|322119312|gb|EFX91428.1| PP-loop family protein [Actinobacillus ureae ATCC 25976]
          Length = 317

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 33/192 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------HCLRETAKD 68
              ++V +SGG DS      L  +L+ +    I F  ++V+          H L      
Sbjct: 44  GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVNLDQKQPGFPEHIL------ 94

Query: 69  EVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
              Y+  +    +I       +V  K  + +T   +     R  ++   A  + AT I  
Sbjct: 95  -PEYLKSIGVEYKIVEENTYGIVKEKIPEGKT-TCSLCSRLRRGILYRTATELGATKIAL 152

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQ 183
            H  DD LET+++         G  L  M   ++ D    I  RP   C+ +DI  +   
Sbjct: 153 GHHRDDMLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQA 207

Query: 184 RNISWCEDPSNT 195
           +       P N 
Sbjct: 208 KQFPII--PCNL 217


>gi|165976404|ref|YP_001651997.1| hypothetical protein APJL_0995 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|303251088|ref|ZP_07337274.1| hypothetical protein APP6_0387 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307245883|ref|ZP_07527968.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307250225|ref|ZP_07532181.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252611|ref|ZP_07534505.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254856|ref|ZP_07536682.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257021|ref|ZP_07538797.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259298|ref|ZP_07541027.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|205830591|sp|B0BPR8|TTCA_ACTPJ RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|165876505|gb|ABY69553.1| hypothetical protein APJL_0995 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302650098|gb|EFL80268.1| hypothetical protein APP6_0387 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306853243|gb|EFM85463.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306857754|gb|EFM89854.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859933|gb|EFM91952.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862227|gb|EFM94195.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864505|gb|EFM96412.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866665|gb|EFM98524.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 318

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS      L  +L+ +    I F  ++V+  L +       ++  +  
Sbjct: 44  GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVN--LDQKQPGFPEHILPEYL 98

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 99  ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 158

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  L  M   ++ D    I  RP   C+ +DI  +   +     
Sbjct: 159 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQAKQFPII 213

Query: 190 EDPSNT 195
             P N 
Sbjct: 214 --PCNL 217


>gi|126208449|ref|YP_001053674.1| hypothetical protein APL_0975 [Actinobacillus pleuropneumoniae L20]
 gi|303253571|ref|ZP_07339709.1| hypothetical protein APP2_0759 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247973|ref|ZP_07530004.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|205830366|sp|A3N0Y3|TTCA_ACTP2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|126097241|gb|ABN74069.1| hypothetical protein APL_0975 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|302647491|gb|EFL77709.1| hypothetical protein APP2_0759 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855527|gb|EFM87699.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 318

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS      L  +L+ +    I F  ++V+  L +       ++  +  
Sbjct: 44  GDKVMVCLSGGKDS---YTLLDILLNLKLSAPIHFDIVAVN--LDQKQPGFPEHILPEYL 98

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 99  ESIGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 158

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLRCRREDIRSFLLQRNISWC 189
            LET+++         G  L  M   ++ D    I  RP   C+ +DI  +   +     
Sbjct: 159 MLETLFLNMF-----YGGKLKSMPPKLISDDGKQIVIRPLAYCKEKDIEKYSQAKQFPII 213

Query: 190 EDPSNT 195
             P N 
Sbjct: 214 --PCNL 217


>gi|6573726|gb|AAF17646.1|AC009978_22 T23E18.11 [Arabidopsis thaliana]
          Length = 412

 Score = 72.2 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 60/214 (28%), Gaps = 49/214 (22%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I  V    R   +   + +  SGG DS  L   L  + + R    +    +S+D  
Sbjct: 67  FEEEIHQVIVGNRLFKFGERVAIGASGGKDSSVLAYVLSEL-NRRHSYGLDLFLLSIDEG 125

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREAR 106
           +     D +  V     +  +   +VS+K+                   T      R+ R
Sbjct: 126 ITGYRDDSLETVKRNEVQYGLPLQIVSYKDLYGWTMDEIVKMIGLKNNCTFCGVFRRQVR 185

Query: 107 YALISEH-----------------------------AKTINATLIMTAHTFDDQLETVYM 137
              +                                A  +    ++T H  DD  ETV +
Sbjct: 186 SKFLHSIPSLSKFLQNRLFCFMILCLVEFLKALDRGAALLKVDKLVTGHNADDIAETVVL 245

Query: 138 RSQRDYAEKGMGL----SGMCDTILYDLNLWISR 167
              R    +        +G    I     + ISR
Sbjct: 246 NILRGDIARLSRCTSITTGEDGPIPRFTRMLISR 279


>gi|297721059|ref|NP_001172892.1| Os02g0266500 [Oryza sativa Japonica Group]
 gi|255670789|dbj|BAH91621.1| Os02g0266500 [Oryza sativa Japonica Group]
          Length = 106

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDL-----------NLWISRPFLRCRREDIRSF 180
            E   +R  R+    G+  +     +                + + RP L   ++D+   
Sbjct: 3   AELFVLRLSRNSGVLGLAGTAFVSQLFAPNLKYDGDNFSRYGVILVRPMLEFSKDDMYKI 62

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220
               N  W EDP+N    + R R+R  +R + +    L +
Sbjct: 63  CQGSNHLWVEDPTNNSLLYVRNRIRASLRSLSIEGSQLHL 102


>gi|221482148|gb|EEE20509.1| cell cycle protein mesj, putative [Toxoplasma gondii GT1]
          Length = 1549

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 35/237 (14%)

Query: 121  LIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++ AH   D++ET+ M+  R      +G +S +           + RPFL  ++  +  
Sbjct: 980  YVVMAHHAGDEMETLLMKLLRGAHITNLGGMSAVSGLSSQTPRFAVFRPFLSLQKAQLHR 1039

Query: 180  FLLQRNISWCEDPSNTDD-RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLI 238
            +L     SW ED +N    ++ R  V   +    + A   + K     +  V  A ++ I
Sbjct: 1040 YLKALGGSWLEDETNALPEKYPRNAV---LSPSAVEADASRGK----AQGAVPRAGSLGI 1092

Query: 239  PKYLTVHMRSIIAISQDILNID------------STLLFYLLRVSAAICGGQISLPGYRS 286
                        A S+  L+                 L    + ++ +   +   P    
Sbjct: 1093 SPVFRDERGGEAARSRVPLSAPVWAEDCREVHSEGDALEDAEKAASVVSANERGQPSRER 1152

Query: 287  --MERVMLFLKSGKRGCVSIGR---VVIDRRANFL---------WITRAVRNLPTLI 329
               + ++  +          G      + RRA+ L         W+ R   N    +
Sbjct: 1153 NDAQALLTRIAEAAASIFCKGSEPTHALFRRASGLARQSAALRDWVDREASNWEERV 1209



 Score = 39.1 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           P   L+  SGGSDS  LL A   + S R+    +  A  
Sbjct: 380 PPLFLLCCSGGSDSTALLHAFARLFSPRAVALRQ--ACH 416


>gi|167720280|ref|ZP_02403516.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei DM98]
          Length = 97

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 7  ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
          +++   + +L     I +A SGG DS  LL       + R  G  +  A+ V H L   A
Sbjct: 15 DALGVALSALPDDTPIAIAYSGGLDSTVLLH-----AAARIAGAGRCIALHVHHGLSANA 69

Query: 67 KDEVRYVSDVCSRLRIAHSVVSWKNSK 93
             + + ++    L            +
Sbjct: 70 DAWLAHCAETAQALGARFDAARVDVPR 96


>gi|163784920|ref|ZP_02179681.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879813|gb|EDP73556.1| cell cycle protein MesJ [Hydrogenivirga sp. 128-5-R1-1]
          Length = 80

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            ILVA S G+DS  L   L  +      GKI      ++H +R+ + +E  +      +
Sbjct: 21 DKILVAYSTGADSSALAFLLTKLKEYLKIGKIAL--AYLNHSIRKESDEEEIFAKQFAEK 78

Query: 80 LR 81
          L 
Sbjct: 79 LG 80


>gi|226327026|ref|ZP_03802544.1| hypothetical protein PROPEN_00887 [Proteus penneri ATCC 35198]
 gi|225204244|gb|EEG86598.1| hypothetical protein PROPEN_00887 [Proteus penneri ATCC 35198]
          Length = 65

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
           N ++ RP L   RE I  +  ++ + W ED SN DD ++R  +R  V  +    L  +  
Sbjct: 5   NSYLLRPLLNITREQIEFYATEQELDWIEDDSNQDDSYDRNFLRLRVMPL----LTQRWP 60

Query: 222 KFQDL 226
            F++ 
Sbjct: 61  HFRNR 65


>gi|158522234|ref|YP_001530104.1| PP-loop domain-containing protein [Desulfococcus oleovorans Hxd3]
 gi|158511060|gb|ABW68027.1| PP-loop domain protein [Desulfococcus oleovorans Hxd3]
          Length = 264

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 23/227 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY---VSD 75
              + V VSGG DS+ L   L+  LS R           VD         E  +   + D
Sbjct: 49  GDRVCVGVSGGKDSLTLFWFLYERLS-RIPISYTLFPCYVDPGF------EDGFGGVLQD 101

Query: 76  VCSRLRIA--------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             ++              +V+  ++  +      +R  R  L    +  ++   +   H 
Sbjct: 102 FFAQTGWPPLRVESTDCGIVAHSDANRENPCFLCSRLRRKRLFE-VSAELDCNKLALGHH 160

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +E++++         G          ++   + + RP      +DI+ F       
Sbjct: 161 KDDIIESLFINMC----YAGEISLMKPFLPMFGGKVTLVRPLALADEKDIQRFAGHLRFP 216

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             ++P  + +  +R  ++  +  +      +K   F+ L     + +
Sbjct: 217 EFKNPCPSAETSKRSEIKALLEALYRGNRKVKGNIFRSLSNVKTDYL 263


>gi|221052694|ref|XP_002261070.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|194247074|emb|CAQ38258.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 967

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRC 172
           A+    +LI   H  +D  ETV  +  R    K + G+  +        +  I RPF++ 
Sbjct: 407 ARKFVKSLIFLGHHRNDNNETVLFQFLRGAFIKNLKGMKFLTSI----KDCLIYRPFIKL 462

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217
           R+  +  ++     SW  D SN      R  +R  +       L 
Sbjct: 463 RKIHLYMYMQIVKKSWRFDTSNRKLSASRNFIRHVIIPSISSMLG 507



 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMA 100
             + +  +H  RE    E  +V ++C R ++       KN+           K     + 
Sbjct: 243 NITVLYCNHATREECIKEKNFVKNICRRHKLRFRTKLLKNNWEATPKNEPTRKRGNNFLL 302

Query: 101 AAREARYALISEHAKTI 117
            ARE R  +  +  + +
Sbjct: 303 LAREWRRHVYVQLTRQL 319


>gi|315605197|ref|ZP_07880243.1| helix-turn-helix domain protein [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313014|gb|EFU61085.1| helix-turn-helix domain protein [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 109

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 5   PIESVRFFVRSLVYP--------AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           P+ +    VR+ ++P          ++V +SGG+DS+ L +      S      +    +
Sbjct: 16  PLRACSLAVRAALHPILAGGTRARRLVVGLSGGADSLALALVTVDAASR---AGVPVVTV 72

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK 93
           +VDH LR  ++ E   V+++   L     V +    +
Sbjct: 73  TVDHGLRPGSRAEAESVAELARSLGADAIVETVTVPR 109


>gi|159184950|ref|NP_354840.2| hypothetical protein Atu1858 [Agrobacterium tumefaciens str. C58]
 gi|205830658|sp|Q7CYD2|TTCA_AGRT5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|159140228|gb|AAK87625.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 311

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/212 (20%), Positives = 75/212 (35%), Gaps = 24/212 (11%)

Query: 20  AHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-D 75
              LV +SGG DS        AL   L  R    ++  A ++D   +       ++V  +
Sbjct: 70  KRWLVGLSGGKDS----YGLLALLLDLKWRGLLPVELVACNLDQG-QPN---FPKHVLPE 121

Query: 76  VCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTF 128
             +++ +AH +         K   P  G   +     R   +   A+      ++  H  
Sbjct: 122 YLAKIGVAHRIEYRDTYSIVKEKVPSGGTYCSLCSRLRRGNLYRIAREEGCDALLLGHHR 181

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           +D LET +M         GM    + D    + +L + RP   C  ED+  F        
Sbjct: 182 EDILETFFMNFFHGGRLAGMPAKLLND----EGDLMVMRPLAYCAEEDMAKFAAAMEFPI 237

Query: 189 C-EDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
              D   + D  +R  ++  + DI+      K
Sbjct: 238 IPCDLCGSQDGLQRNAMKDMLADIERRMPGRK 269


>gi|167524896|ref|XP_001746783.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774563|gb|EDQ88190.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1082

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 68/191 (35%), Gaps = 16/191 (8%)

Query: 7    ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            E++R +   +     ILV +SGG DS+  L+     L  ++  + +  A++++       
Sbjct: 822  EAIRDY-DMIQEGDRILVGLSGGKDSLS-LLHCLLALQRKAPVRFEVGAVTMN----PNF 875

Query: 67   -KDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINAT 120
               + R +      L + +   S            + + +     +  ++    +     
Sbjct: 876  PGFDPRPLIPYLKALGVPYFFESQDLLAQAQDTQPSSICSWCARMKRGILYSCLRREGYN 935

Query: 121  LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++      DD  E+  M S  +   + M             ++ I RP +  R    R+F
Sbjct: 936  VLALGQHLDDLAESFVMSSFHNGRLRTMKAHYCNGK----GDVRIIRPLVYTRERQTRTF 991

Query: 181  LLQRNISWCED 191
              + ++   +D
Sbjct: 992  AAESHLPVIQD 1002


>gi|170288548|ref|YP_001738786.1| PP-loop domain-containing protein [Thermotoga sp. RQ2]
 gi|170176051|gb|ACB09103.1| PP-loop domain protein [Thermotoga sp. RQ2]
          Length = 304

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 29/201 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+  + F R+    + IL+AVSGG DS+ L   L  +  +     I+           
Sbjct: 36  KAIKKFKMFGRN----SKILIAVSGGKDSVSLWHMLKKLGYEVDALFIRA-------GKS 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISE 112
              +     V      L     +V              +   R          R  L+++
Sbjct: 85  GMVQKAQEIVEKNAELLNTKLHIVDATEYFEGLSTQEISIMLRRPVCSICGVVRRYLMNK 144

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PF 169
            A      +++T H  +D+   +             G       +L   +  +     P 
Sbjct: 145 FAYENGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPL 200

Query: 170 LRCRREDIRSFLLQRNISWCE 190
           +    EDI+ +     I   E
Sbjct: 201 VLNYEEDIKLYATLNEIPHLE 221


>gi|296237834|ref|XP_002763910.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Callithrix
           jacchus]
          Length = 194

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L  ++       I    ++VD  +       +  V
Sbjct: 46  RLLPPGAVVAVGASGGKDSTVLAHVLRELVPRLG---ISLQLVAVDEGIGGYRDAALAAV 102

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +R  +  +VV++++      + A AR                  R   + E A+ +
Sbjct: 103 RRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRV 162

Query: 118 NATLIMTA 125
            AT I+T 
Sbjct: 163 GATHIVTG 170


>gi|257783999|ref|YP_003179216.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469]
 gi|257472506|gb|ACV50625.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469]
          Length = 529

 Score = 71.1 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 26/197 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +++A+SGG DS  +   +H  + D      + + + V+H  L
Sbjct: 204 NIIEQKVEEIRQKVGNGRVILALSGGVDSSVVAALVHRAIGD------QLTCVFVNHGML 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQ-----TGLMAAAR----EARYALISE 112
           R+    E   V    C +  +    V  +    +     T      R    E       E
Sbjct: 258 RKG---EPEMVEQVFCKQFNVPLIHVHAEERYAELLAGVTEPEKKRRLIGTEFWKVFFDE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFL 170
             K      +     + D +E+      R    K   +    + I +   +   +  P  
Sbjct: 315 AQKLDGVQFLAQGTIYPDIIES----GARKTGGKAATIKSHHNLIPFPEGVHFDLIEPLD 370

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+  +   + 
Sbjct: 371 HFFKDEVRALGVSLGLP 387


>gi|302876712|ref|YP_003845345.1| PP-loop domain-containing protein [Clostridium cellulovorans 743B]
 gi|307687388|ref|ZP_07629834.1| PP-loop domain-containing protein [Clostridium cellulovorans 743B]
 gi|302579569|gb|ADL53581.1| PP-loop domain protein [Clostridium cellulovorans 743B]
          Length = 290

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 68/193 (35%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             I +++ +  +L+     I VA+SGG DS+ +      +L  +     +   I++D   
Sbjct: 39  KFIRAIKDY--NLIEEGDKIAVAISGGKDSLLMAKLFQELLKHKKM-NFEVEFIAMDPGY 95

Query: 63  RETAKDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGL-----MAAAREARYALISEH 113
            E+       +  +       L I   + +    +    +          + R  ++   
Sbjct: 96  HES-------IRTLLEDNLKYLEIDAHIFNADIFEVAEKIAQDYPCYMCAKMRRGVLYSK 148

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ +    +   H ++D +ET  +        K M      D      N+ + RP     
Sbjct: 149 AQELGCNKLALGHHYNDVIETTMLNILYAGNFKTMLPKLKADNF---ENMELIRPLYYIE 205

Query: 174 REDIRSFLLQRNI 186
            + I++F+    I
Sbjct: 206 EKSIKNFIQHSGI 218


>gi|70607306|ref|YP_256176.1| ATP binding protein [Sulfolobus acidocaldarius DSM 639]
 gi|68567954|gb|AAY80883.1| ATP binding protein [Sulfolobus acidocaldarius DSM 639]
          Length = 320

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 82/241 (34%), Gaps = 32/241 (13%)

Query: 6   IESVRFFVRS------LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           IE +R  V+       L   + I++AVSGG DS  L   L S +        K  A ++ 
Sbjct: 28  IEDIRDRVKREIERLGLSRASKIVLAVSGGKDSYVLADTLASFID-----HDKLVAYNII 82

Query: 60  HCLRETAKDEV--RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----REA-------- 105
             +    + E   ++  +  + L I     S++ S   T     A    R          
Sbjct: 83  EGISGYNRVEQVIQF-KNFLNELGIELIEDSFEKSVGFTLDQMVANSKKRNLNVSACTFC 141

Query: 106 ---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
              R  LI+     +N   + T H  DD+++ + +   R    + +   G     L    
Sbjct: 142 GGFRRKLINTAGLKLNGDYVATGHNLDDEVQAIMLNVIRGDLIRLIRF-GDKPIKLSSRF 200

Query: 163 LWISRPFLRCRREDIRSFLLQRNISW--CEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220
           +   +P  R    +   +   +   +   E P        R +VR  +  ++       +
Sbjct: 201 VLRVKPLRRIYEWETTMYAYYKGYKFQEVECPYIELKPTLRAKVRELLYALEEKRPGTLL 260

Query: 221 K 221
           +
Sbjct: 261 Q 261


>gi|73947791|ref|XP_541458.2| PREDICTED: hypothetical protein XP_541458 [Canis familiaris]
          Length = 504

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 19/130 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L   A + V  SGG DS  L   L  +        +    ++VD  +       +  V
Sbjct: 207 RLLPPGAVVAVGASGGKDSTVLAHVLRELAPRLG---VSLRLVAVDEGIGGYRDAALAAV 263

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
               +   +  +VV++ +      + A AR                  R   + E A+ +
Sbjct: 264 RRQAALWDLPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLV 323

Query: 118 NATLIMTAHT 127
            AT I+T   
Sbjct: 324 GATHIVTGEH 333


>gi|148269863|ref|YP_001244323.1| PP-loop domain-containing protein [Thermotoga petrophila RKU-1]
 gi|147735407|gb|ABQ46747.1| PP-loop domain protein [Thermotoga petrophila RKU-1]
          Length = 304

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 29/201 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+  + F R+    + IL+AVSGG DS+ L   L  +  +     I+           
Sbjct: 36  KAIKKFKMFGRN----SKILIAVSGGKDSVSLWHMLKKLGYEVDALFIRA-------GKS 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISE 112
              +     V      L     +V              +   R          R  L+++
Sbjct: 85  GMVQKAQEIVEKNAELLNTKLHIVDATEYFGGLSTQEISIMLRRPVCSICGVVRRYLMNK 144

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PF 169
            A      +++T H  +D+   +             G       +L   +  +     P 
Sbjct: 145 FAYENGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPL 200

Query: 170 LRCRREDIRSFLLQRNISWCE 190
           +    EDI+ +     I   E
Sbjct: 201 VLNYEEDIKLYATLNEIPHLE 221


>gi|15642970|ref|NP_228012.1| hypothetical protein TM0197 [Thermotoga maritima MSB8]
 gi|4980693|gb|AAD35289.1|AE001704_10 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 304

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 29/201 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+  + F R+    + IL+AVSGG DS+ L   L  +  +     I+           
Sbjct: 36  KAIKKFKMFGRN----SKILIAVSGGKDSVSLWHMLKKLGYEVDALFIRA-------GKS 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISE 112
              +     V      L     +V              +   R          R  L+++
Sbjct: 85  GMVQKAQEIVEKNAELLNTKLHIVDATEYFGGLSTQEISIMLRRPVCSICGVVRRYLMNK 144

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PF 169
            A      +++T H  +D+   +             G       +L   +  +     P 
Sbjct: 145 FAYENGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPL 200

Query: 170 LRCRREDIRSFLLQRNISWCE 190
           +    EDI+ +     I   E
Sbjct: 201 VLNYEEDIKLYATLNEIPHLE 221


>gi|163759585|ref|ZP_02166670.1| PP-loop [Hoeflea phototrophica DFL-43]
 gi|162283182|gb|EDQ33468.1| PP-loop [Hoeflea phototrophica DFL-43]
          Length = 305

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 20/217 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVCSR 79
             L+A+SGG DS   L+AL   L  R    +   A ++D   +       +++  D  ++
Sbjct: 73  RWLIALSGGKDS-YGLLALLLDLQWRGMLPVDLIACNLDQG-QPN---FPKHILPDFLTK 127

Query: 80  LRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
             + H +       V  +         A     R   +   A+      ++  H  DD L
Sbjct: 128 HGVRHRIEYRDTYSVVTEKVPEGATYCALCSRLRRGHLYRIAREEGCQALVLGHHRDDIL 187

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDIRSFLLQRNISWC-E 190
           ET ++            L+ M   +L D   + + RP   C  ED+  +           
Sbjct: 188 ETFFLNFFHGGR-----LAAMPPKLLNDEGDVMVLRPLAYCAEEDLARYAEALAFPIIPC 242

Query: 191 DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           D   + D  +R  ++  + +I+      K    + L 
Sbjct: 243 DLCGSQDGLQRNAMKAMISEIERRMPGRKDSMIRALA 279


>gi|205830652|sp|Q98NP4|TTCA_RHILO RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
          Length = 295

 Score = 70.7 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 29/220 (13%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  S+V P    LVA+SGG DS        AL   L  R    ++  A ++D   
Sbjct: 44  QAIEDF--SMVEPGQRWLVALSGGKDS----YGLLALLLDLKWRGLLPVELLACNLDQG- 96

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVV------SWKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +   IAH +          N  P+     +     R   +   A
Sbjct: 97  QPN---FPKHILPDYLNANGIAHRIEYQDTYSVVTNKLPEGSTYCSLCSRLRRGHLYRIA 153

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + ++  H  +D LET +M            L+ M   +L D   + + RP   C 
Sbjct: 154 REEGCSALVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDVMVLRPLSYCA 208

Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDID 212
             D+  F           D   + +  +R  ++  + DI+
Sbjct: 209 EIDLEKFAAAMRFPIIPCDLCGSQEGLQRNAMKAMLEDIE 248


>gi|160946268|ref|ZP_02093479.1| hypothetical protein PEPMIC_00230 [Parvimonas micra ATCC 33270]
 gi|158447791|gb|EDP24786.1| hypothetical protein PEPMIC_00230 [Parvimonas micra ATCC 33270]
          Length = 305

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 56/173 (32%), Gaps = 12/173 (6%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I VA+SGG DS+ +      +  +      +   I++D      +  E+    +  S
Sbjct: 65  GDKIAVAISGGKDSLIMAKLFQELKKN-GKDNFELEFIAMDPGYHP-SIKELLL--ENAS 120

Query: 79  RLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            L I  +     + +  +              R   +   AK +    +   H F+D +E
Sbjct: 121 YLEIPLTYYPADIFAVADKIAGDYPCYMCARMRRGSLYAKAKELGCNKLALGHHFNDVIE 180

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           T  +      + K M             ++ I RP      E I  ++    +
Sbjct: 181 TTMLNLLCAGSFKTMPPKLKAKNF---EDMEIIRPLYLIEEEYIIRWMKSTGL 230


>gi|213853118|ref|ZP_03382650.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 235

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 59/200 (29%), Gaps = 16/200 (8%)

Query: 75  DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
               +L + + +V                   +     R  ++   A  + AT I   H 
Sbjct: 15  AYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHH 74

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD L+T+++        KGM    M D    D    + RP   CR +DI  F   +   
Sbjct: 75  RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKDIVRFAEAKAFP 130

Query: 188 WCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
               P N        +R  +   +RD D          F  ++  V + +          
Sbjct: 131 II--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKG 188

Query: 245 HMRSIIAISQDILNIDSTLL 264
                  I    L  D   +
Sbjct: 189 ITHGSEVIDGGDLAFDREEI 208


>gi|237739846|ref|ZP_04570327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
 gi|229423454|gb|EEO38501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 2_1_31]
          Length = 343

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 25/188 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +KD +     VC R
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCDR 53

Query: 80  LRIAHSVVSWKN---------------SKPQTGLMAAAR-EARYALISEHAKTINATLIM 123
           L I H VV+ +                S            E ++ ++ E A    A  + 
Sbjct: 54  LGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADYVA 113

Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           T H T  +  ET      +         S M   +  +    +  P     +++IR   L
Sbjct: 114 TGHYTSVEYSETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEIREIAL 173

Query: 183 QRNISWCE 190
           +  +   +
Sbjct: 174 KIGLEVHD 181


>gi|88861531|ref|ZP_01136139.1| hypothetical protein PTD2_04990 [Pseudoalteromonas tunicata D2]
 gi|88816471|gb|EAR26318.1| hypothetical protein PTD2_04990 [Pseudoalteromonas tunicata D2]
          Length = 178

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 9/159 (5%)

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R  ++   AK + AT I   H  DD +ET+++        KGM           D    +
Sbjct: 1   RRGILYRTAKELGATKIALGHHRDDMIETLFLNMFYGGKLKGM----PAKLASDDGQHMV 56

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKK 222
            RP   C+  DI  +   +       P N     +  +R  ++  +++ D          
Sbjct: 57  IRPLAYCKEADIEEYAEHKEFPII--PCNLCGSQENLQRKNIKMMLQEWDKTNPGRIETI 114

Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
           F  ++    + +A           +S +AI +  + +D 
Sbjct: 115 FTAMQNVTPSHLADNNLFDFKNLQKSDVAIGEGDIALDK 153


>gi|156086540|ref|XP_001610679.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154797932|gb|EDO07111.1| hypothetical protein BBOV_IV007570 [Babesia bovis]
          Length = 302

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 46/201 (22%), Gaps = 79/201 (39%)

Query: 21  HILVAVSGGSDSMGLLIAL----------------HSVLSDRSFGKI------------K 52
            ++++ SGG DSM LL  L                   L +     +             
Sbjct: 95  PVILSCSGGQDSMSLLHCLGLIKHYAGGMVASTPWSRYLDNNDRFDLPSIYQSLMTLLRN 154

Query: 53  FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS-------VVSWKNSKPQTGLMAAAREA 105
              +  DHC R     ++  +   C +  +          V    +          AR+ 
Sbjct: 155 TYVVYFDHCARPDTDKDIDVIRSACEKYGLKFHLEKAESQVKQLAHDDISGNFQKCARDW 214

Query: 106 RYALISEHAKTINA--------------------------------------------TL 121
           R          I+                                              +
Sbjct: 215 RREAYRRLIDDIDILQDGSDNSVSYSDSLLNGKIFNKRLLLQKSEDLDAASLINEHTRGI 274

Query: 122 IMTAHTFDDQLETVYMRSQRD 142
           ++  H  +D +ET   +  R 
Sbjct: 275 VLMGHHSNDNVETFLFKLLRG 295


>gi|269120310|ref|YP_003308487.1| PP-loop domain protein [Sebaldella termitidis ATCC 33386]
 gi|268614188|gb|ACZ08556.1| PP-loop domain protein [Sebaldella termitidis ATCC 33386]
          Length = 284

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 64/187 (34%), Gaps = 16/187 (8%)

Query: 6   IESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           I++ + F  SLV     I VA+SGG DS+  L  L   L   S  + +   IS++     
Sbjct: 41  IKAAKEF--SLVEDGDRIAVAISGGKDSLL-LAKLLQELQRASRTEFELVFISMNPGFNS 97

Query: 65  TAKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
                +  +      LRI   +             +        + R   +   A ++  
Sbjct: 98  E---NLENLKKNLDHLRIPCEIYDDNIFEIAEKMAKDYPCYMCAKMRRGSLYTKAVSLGC 154

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +   H  DD  ETV M   +    +    + +      + ++ + RP      +DI  
Sbjct: 155 NKLALGHHMDDVAETVLMSMFQMSKYE----TMLPRLKADNFDIELIRPLYYVEEKDIIK 210

Query: 180 FLLQRNI 186
           F     I
Sbjct: 211 FTANNGI 217


>gi|76156692|gb|AAX27848.2| SJCHGC06955 protein [Schistosoma japonicum]
          Length = 148

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 12/122 (9%)

Query: 28  GGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVV 87
           GG DS  L   L ++L+ R     +   +S+D  +     D +  V     +  +   ++
Sbjct: 1   GGKDSTVLAYIL-NLLNKRYDYGAELLLLSIDEGISGYRDDSLMTVKRNQIQYALPLKIL 59

Query: 88  SWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           S++                          R   + + A  + A  I T H  DD  ETV 
Sbjct: 60  SYQELYGWSMDDIVKRIGNKRNCTYCGIFRRQALDKGALLLGANKICTGHNADDIAETVL 119

Query: 137 MR 138
           M 
Sbjct: 120 MN 121


>gi|13470364|ref|NP_101931.1| C32 tRNA thiolase [Mesorhizobium loti MAFF303099]
 gi|14021104|dbj|BAB47717.1| mlr0047 [Mesorhizobium loti MAFF303099]
          Length = 271

 Score = 70.3 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 29/220 (13%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  S+V P    LVA+SGG DS        AL   L  R    ++  A ++D   
Sbjct: 20  QAIEDF--SMVEPGQRWLVALSGGKDS----YGLLALLLDLKWRGLLPVELLACNLDQG- 72

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVV------SWKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +   IAH +          N  P+     +     R   +   A
Sbjct: 73  QPN---FPKHILPDYLNANGIAHRIEYQDTYSVVTNKLPEGSTYCSLCSRLRRGHLYRIA 129

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + ++  H  +D LET +M            L+ M   +L D   + + RP   C 
Sbjct: 130 REEGCSALVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDVMVLRPLSYCA 184

Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDID 212
             D+  F           D   + +  +R  ++  + DI+
Sbjct: 185 EIDLEKFAAAMRFPIIPCDLCGSQEGLQRNAMKAMLEDIE 224


>gi|315605195|ref|ZP_07880242.1| hypoxanthine phosphoribosyltransferase [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313116|gb|EFU61186.1| hypoxanthine phosphoribosyltransferase [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 254

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 72/255 (28%), Gaps = 30/255 (11%)

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++  HT +DQ ETV +R  R        L  +      +  +   RP L  RR D     
Sbjct: 23  VLLGHTMEDQAETVLLRLARGSGP--SSLRAIAPLARDEAGVTWLRPLLGLRRADTAGAC 80

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKY 241
            Q  ++  EDP+N                  +   +         R  + +     +   
Sbjct: 81  AQAGLTPVEDPTNA-----------------VDGPWRAADGSPLRRSALRHRALPALASA 123

Query: 242 LTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL---PGYRSMERVMLFLKSGK 298
           L +     +A S  +   D   L    R          +    P   S+  V    ++ +
Sbjct: 124 LGMDPVPALARSAQLCADDDDALRQWARQLTRGARSGDAPEPGPSGVSLS-VSALAQAPR 182

Query: 299 RGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQS 358
                  R    R            +L  +         W G+      S S  ++G  +
Sbjct: 183 AVRARAVREAASRAGLG------ALSLANVEAVDGLVVAWRGQGPIDLPSGSASRVGRGA 236

Query: 359 -YRKADVPSGIPPII 372
             R    P    P +
Sbjct: 237 EARIVLAPRAGSPAL 251


>gi|222099463|ref|YP_002534031.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359]
 gi|221571853|gb|ACM22665.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359]
          Length = 327

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 26/197 (13%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +++ F +     + IL+AVSGG DS+ L   L  +  +     I+              +
Sbjct: 60  AIKKF-KMFRRDSKILIAVSGGKDSVSLWHMLKKLGYEVDALFIRA-------GRSGMVQ 111

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---RE--------ARYALISEHAKT 116
                V      L     +V              +   R          R  L+++ A  
Sbjct: 112 KAQEIVEKNAELLGTKLHIVDATEYFEGLSTQEISIMLRRPVCSICGVVRRYLMNKFAYE 171

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRCR 173
               +++T H  +D+   +             G       +L   +  +     P +   
Sbjct: 172 NGYDVVVTGHNLNDEASVLLGNILHWQE----GYLERQWPLLPKTHEKLVPKAKPLVLNY 227

Query: 174 REDIRSFLLQRNISWCE 190
            EDI+ +     I   E
Sbjct: 228 EEDIKLYATLNEIPHLE 244


>gi|145550491|ref|XP_001460924.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124428755|emb|CAK93527.1| unnamed protein product [Paramecium tetraurelia]
          Length = 244

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 14/177 (7%)

Query: 50  KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----------NSKPQTGL 98
                 +S+D  ++    D +  V        +   ++S+K                   
Sbjct: 2   GCHLYLLSIDEGIKGYRDDSLETVKQNQITYDLDLKILSYKELFNWSMDEVVAQIGLNNN 61

Query: 99  MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCD 155
                  R   +   A  +    I+T H  DD  ET  M   R       K   +    D
Sbjct: 62  CTYCGVFRRQALDRGAIQLGVDKIITGHNADDMAETFLMNLLRGDIFRLPKSTAIITGDD 121

Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                  L   +PF     ++I  +   + + +            R  VR  +++++
Sbjct: 122 GDNGIATLPRCKPFKYTYEKEIVMYAHYKKLIYFSTECTYSPNAFRGHVRELIKNLE 178


>gi|213581058|ref|ZP_03362884.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 247

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 70/226 (30%), Gaps = 34/226 (15%)

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK---VNNAVAMLIPKYLTVHMRSIIAIS 253
           D ++R  +R       L  L  +   F     +   +      L+ + L   +   I  +
Sbjct: 1   DAYDRNFLRLR----ALPLLQQRWPHFPAAVARSATLCAEQERLLDELLASDLTDCI-TT 55

Query: 254 QDILNIDSTLLFYLLRVSA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGR 306
           +  L +   +    +R +A     +      +P   ++ER+       +     C+  G 
Sbjct: 56  EGTLRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDALERIWQEVALARDDASPCLRFGD 115

Query: 307 VVIDRRANFLWITRAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVP 365
             I R  + LW  + V     T + +P   T          L   L  +      +   P
Sbjct: 116 HEIRRYQSQLWWIKTVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRP 168

Query: 366 SGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
                +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 169 REEESVSIRFKAPGLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 214


>gi|291533799|emb|CBL06912.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Megamonas hypermegale ART12/1]
          Length = 207

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 12/157 (7%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV-------RD 210
           +   N  I RPFL   RE+I ++ L  NI+ C D +N    +ER R+R  +         
Sbjct: 1   MKAKNEDIIRPFLCLYREEIEAYCLAENINPCLDETNNCLDYERNRIRLDLIPRLKAYNP 60

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV----HMRSIIAISQDIL-NIDSTLLF 265
             + A+    K        +N  V       + V      R  I I   +L      +  
Sbjct: 61  KVVTAICNSAKIIAQENDFINYYVENFYRDKVIVDIDNQGRKSIKIDIKVLKQEHKAIRN 120

Query: 266 YLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
            L R         +    +  ++++  FL +G  G +
Sbjct: 121 ALYRYIIKEFKRNLENISFVHIDKIDKFLYNGHTGLI 157


>gi|254173377|ref|ZP_04880050.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp.
           AM4]
 gi|214032786|gb|EEB73615.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp.
           AM4]
          Length = 271

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 15/128 (11%)

Query: 7   ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E VR  ++ L+      +VA SGG DS+  L     V     +   +  A+ VDH L   
Sbjct: 39  EKVRRELKELMRDVNKAVVAYSGGKDSVVALYLAKEV-----YKVPELEAVMVDHGL--M 91

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
           A++ +     +   L +   V+ +  S               A  +     + ++A    
Sbjct: 92  AEEAIENAKRIAEHLGVPFKVLRYDYSDIFRNALLKAQSPCRACSKRTMEKLRKYALRNG 151

Query: 119 ATLIMTAH 126
              I+T H
Sbjct: 152 YRYIITGH 159


>gi|217967925|ref|YP_002353431.1| GMP synthase, large subunit [Dictyoglomus turgidum DSM 6724]
 gi|217337024|gb|ACK42817.1| GMP synthase, large subunit [Dictyoglomus turgidum DSM 6724]
          Length = 507

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+AVSGG DS  L + L   + D+       +AI VDH  LR   K+E  
Sbjct: 204 IREQVGENKVLLAVSGGVDSTTLAVLLQRAIGDK------LTAIFVDHGLLRIGEKEE-- 255

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYAL---ISEHAKTINATLIM 123
            VS     L +   V+  +    +            R   +       E A+       +
Sbjct: 256 -VSRFLKDLGVNLVVIDARERFLEKLRGVIDPEEKRRVIGHEFVGVFKEEARKRGPFKFL 314

Query: 124 TAHTF-DDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIR 178
              T   D +E+         +  GM            +  +L   +  PF    ++++R
Sbjct: 315 AQGTLYPDVIES-------AASNTGMAAKIKTHHNVGGLPEELGFELIEPFRYLFKDEVR 367

Query: 179 SFLLQRNIS 187
                  I 
Sbjct: 368 KIAEILGIP 376


>gi|213424699|ref|ZP_03357452.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. E02-1180]
          Length = 172

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 14/150 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++  F   +     I+V +SGG DS  +L  L ++            A+++D   +   
Sbjct: 28  EAIADF-NMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPI-NFSLVAVNLD-QKQPG- 83

Query: 67  KDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTIN 118
                ++      +L + + +V        K   P+     +     R  ++   A  + 
Sbjct: 84  --FPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELG 141

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
           AT I   H  DD L+T+++        KGM
Sbjct: 142 ATKIALGHHRDDILQTLFLNMFYGGKMKGM 171


>gi|238787189|ref|ZP_04630989.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia
           frederiksenii ATCC 33641]
 gi|238724977|gb|EEQ16617.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Yersinia
           frederiksenii ATCC 33641]
          Length = 225

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 16/200 (8%)

Query: 75  DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
               +  + + +V                   +     R  ++   A  + AT I   H 
Sbjct: 3   AYLDKQGVEYKIVEENTYGIVKEIIPEGKTTCSLCSRLRRGILYRTASELGATKIALGHH 62

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD L+T+++        KGM    M D    D    + RP   CR +DI  F + R   
Sbjct: 63  RDDILQTLFLNMFYGGKLKGMPPKLMSD----DGKHVVIRPLAYCREKDIERFAVAREYP 118

Query: 188 WCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
               P N        +R  ++  +RD D          F  ++  V + +          
Sbjct: 119 II--PCNLCGSQPNLQRQVIKDMLRDWDKQYPGRIETMFSAMQNVVPSHLNDHKLFDFKS 176

Query: 245 HMRSIIAISQDILNIDSTLL 264
              +   +    L  D   L
Sbjct: 177 ITHNSEIVDGGDLAFDREEL 196


>gi|255528397|ref|ZP_05395198.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296186775|ref|ZP_06855177.1| hypothetical protein CLCAR_2240 [Clostridium carboxidivorans P7]
 gi|255507916|gb|EET84355.1| PP-loop domain protein [Clostridium carboxidivorans P7]
 gi|296048812|gb|EFG88244.1| hypothetical protein CLCAR_2240 [Clostridium carboxidivorans P7]
          Length = 267

 Score = 69.9 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 35/191 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +  +  ++ L     +++A SGG DS  LL A    L D         A+++   L    
Sbjct: 5   DKYKELIKYLKSLGKVVLAFSGGVDSTFLLKASKEALGD------NVKAVTI---LSPYI 55

Query: 67  KDEV-RYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATL 121
                    ++   L + H ++        +          + A+ S     AK      
Sbjct: 56  PKWEIEEAKELVKELGVKHEIIEAPIIDSIRYNPEDRCYLCKTAVFSMILNAAKEQGYDC 115

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRS 179
           ++    FDD              +   GL  + +       L I  P L C   + +IR+
Sbjct: 116 VIDGTNFDD------------IGDYRPGLRALKE-------LEIKSPLLECKLTKAEIRA 156

Query: 180 FLLQRNISWCE 190
           F  +  ++  +
Sbjct: 157 FSKELKLNTWD 167


>gi|305664217|ref|YP_003860505.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378786|gb|ADM28625.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230]
          Length = 298

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 67/203 (33%), Gaps = 46/203 (22%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  +E ++  +R       I+V  SGG DS  L    + VL +         A+++D   
Sbjct: 19  LRKLEKIKEAIRE---KEKIVVMFSGGVDSTLLAKLAYDVLGN------NAIAVTID--- 66

Query: 63  RETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISE 112
              +    + E+R    +   + I H V+     + +  +          R+ R A++  
Sbjct: 67  ---SPVIPRSEIRDAIQIAKLIGIRHEVIEIDELRNKYLVENPPDRCYLCRKFRDAIVKN 123

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK I   ++     + D                   L      I       I  PF+  
Sbjct: 124 WAKRIGFDVVADGLHYTD-------------------LEDYRPGIAASTEDGIWHPFIEF 164

Query: 173 --RREDIRSFLLQRNISWCEDPS 193
              +++IR +     +     PS
Sbjct: 165 QVTKDEIREYSRLLGLPTWSKPS 187


>gi|116748162|ref|YP_844849.1| PP-loop domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697226|gb|ABK16414.1| PP-loop domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 310

 Score = 69.6 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 21/183 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSR 79
            +LVAVSGG DS+ +   L  +  +          + +D  +    ++     +    S 
Sbjct: 59  PLLVAVSGGKDSLAMWNVLRDLGYETKG-------LHIDLGIEAGFSRASAEAIERFASP 111

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYAL-----------ISEHAKTINATLIMTAHTF 128
             +     S K +     +    R+ R  +           ++      +   +   H  
Sbjct: 112 RNLPWVTYSLKETI-GYSITDIRRKTRRKICSVCGFLKRQMLNRLTIREDYRALAVGHNL 170

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD+   +     R              +    L   + +P  R   ++IR +  +  I  
Sbjct: 171 DDEAGRLLGNIVRHRTRYFEKQYPYLPSDHPRLPARL-KPLYRLEADEIRIYCAETGIMP 229

Query: 189 CED 191
            +D
Sbjct: 230 LDD 232


>gi|220933394|ref|YP_002512293.1| putative cell cycle control ATPase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994704|gb|ACL71306.1| putative cell cycle control ATPase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 265

 Score = 69.6 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 18/234 (7%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVR 71
            R +     +L+ +SGG D    L+ L      R+  + + +A+++D      ++  +  
Sbjct: 29  FRMIADGDRVLLGLSGGKD-SLSLLHLLHHFQRRAPVRFELAAVTID----PQSESFDPS 83

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTA 125
            +      L + +  V     +  T         A     +  L+   A+     ++  A
Sbjct: 84  PLIPYMKALGVEYHYVREPIMELATEHMDNDSYCAFCSRMKRGLMYRTAREHGFNVLAMA 143

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
              DD  E+  M +      K    +      +   +L + RP +  R     +F     
Sbjct: 144 QHLDDLAESFLMSAFHGGRLK----TMKAHYRIDAGDLRVIRPLVYVRERQTAAFAEAAG 199

Query: 186 ISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           +       P+  D   +R  ++  +   +     L       LR  ++  +  +
Sbjct: 200 LPVISENCPACFDMPTQRQHMKELLAREEAALPRLFRNLLSTLRPLMSQGLEDI 253


>gi|194363836|ref|YP_002026446.1| C32 tRNA thiolase [Stenotrophomonas maltophilia R551-3]
 gi|254790147|sp|B4SRP3|TTCA_STRM5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|194346640|gb|ACF49763.1| PP-loop domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 298

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 19/181 (10%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DV 76
               ++V +SGG DS   L+ L   L  R+    +  A+++D   +        +V  + 
Sbjct: 48  AGDKVMVCLSGGKDS-YTLLDLLLQLQKRAPVPFELVAVNLD-QKQPG---FPEHVLPEY 102

Query: 77  CSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            + L + + +       V  +       + +     R   +  HAK    T I   H  D
Sbjct: 103 LAALGVPYQIIEQDTYSVVSRVIPEGRTMCSLCSRLRRGALYNHAKAHGFTRIALGHHCD 162

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCRREDIRSFLLQRNISW 188
           D + T++M            L+ M   +L D     + RP    R  DI  +   R    
Sbjct: 163 DMVATLFMNLFHHAK-----LAAMPPKLLSDDGQHVVIRPLAYVREHDIAEYAQARRFPI 217

Query: 189 C 189
            
Sbjct: 218 I 218


>gi|294783066|ref|ZP_06748390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294479944|gb|EFG27721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 343

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 25/188 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +KD +     VC R
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCDR 53

Query: 80  LRIAHSVVSWKN---------------SKPQTGLMAAAR-EARYALISEHAKTINATLIM 123
           L I H VV+ +                S            E ++ ++ E A    A  + 
Sbjct: 54  LGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADYVA 113

Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           T H T  +  ET      +         S +   +  +    +  P     +++IR   L
Sbjct: 114 TGHYTSVEYSETFSKYLLKSVHSIIKDQSYILYRLAPEKLERLIFPLKPYSKQEIREIAL 173

Query: 183 QRNISWCE 190
           +  +   +
Sbjct: 174 KIGLEVHD 181


>gi|302338856|ref|YP_003804062.1| PP-loop domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636041|gb|ADK81468.1| PP-loop domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 264

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 62/202 (30%), Gaps = 26/202 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--------- 72
           +++ +SGG D    L    ++     +  I +      H L     D   Y         
Sbjct: 50  VILGISGGKD---SLALALALSLRLKWLPISYKL----HGLH---IDWEEYPVPDQKLTA 99

Query: 73  VSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +      L I    V    +  S             R  +  E A+ +    I   H  D
Sbjct: 100 LRRYFDLLGIPLETVRASMFPESFDGKFNCYLCSRNRRRIFFEKARELGVRKIALGHHLD 159

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D +ET  +        +G   S       +  +L++ RP    R   I       ++   
Sbjct: 160 DIVETTMINLF----FRGQFDSMQPVQDFFGGDLFVIRPMCEVRESIIHRLTSALDLPVV 215

Query: 190 EDPSNTDDRFERVRVRRFVRDI 211
           +      +   R R++  VR++
Sbjct: 216 KPDCPYHETNIRARLKPIVREL 237


>gi|206901586|ref|YP_002251252.1| GMP synthase (glutamine-hydrolyzing) [Dictyoglomus thermophilum
           H-6-12]
 gi|206740689|gb|ACI19747.1| GMP synthase (glutamine-hydrolyzing) [Dictyoglomus thermophilum
           H-6-12]
          Length = 507

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 102/311 (32%), Gaps = 49/311 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+AVSGG DS  L + L   + D      K +AI VDH  LR   K+E  
Sbjct: 204 IRKQIGENRVLLAVSGGVDSTTLAVLLQRAVGD------KLTAIFVDHGLLRMGEKEE-- 255

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTINATLIM 123
            V++V  RL +   VV  +       K         +   +       E AK       +
Sbjct: 256 -VTEVLKRLGVNLVVVDAEERFLEKLKGVVDPEEKRKIIGHEFVEVFKEEAKKRGPFKFL 314

Query: 124 TAHTF-DDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIR 178
              T   D +E+         +  GM            +  +L   +  PF    ++++R
Sbjct: 315 AQGTLYPDVIES-------AASHTGMAAKIKTHHNVGGLPEELGFELIEPFRYLFKDEVR 367

Query: 179 SFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLRVK 229
                  +         ++  +R         VR+   V    L  L        +   K
Sbjct: 368 RIAEILGLP--------ENIIKRQPFPGPGLAVRILGEVTRDKLELLRKADCILMEEIKK 419

Query: 230 VNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMER 289
                  +   +  +     + +  D  + +  +   +++    +    + +P Y  + R
Sbjct: 420 WEKY-DEIWQSFAVLLPIKTVGVKGDFRSYEYVIALRVVKSEDGMTANFVEVP-YEILGR 477

Query: 290 VMLFLKSGKRG 300
           +   + +   G
Sbjct: 478 IARRITNEVSG 488


>gi|227888868|ref|ZP_04006673.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
 gi|227850705|gb|EEJ60791.1| conserved hypothetical protein [Lactobacillus johnsonii ATCC 33200]
          Length = 299

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           M+  R      M    +   +    ++ + RP ++  ++++  +    ++ + ED +N +
Sbjct: 1   MKFIRSGDVAEMNSLQIVGNL---GSMKLLRPLVKYSKDELLKYDEDHHLDFIEDKTNFE 57

Query: 197 DRFERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIP 239
           D   R R+R  V  +   +   L      F +    ++   +    
Sbjct: 58  DDTLRNRLRHHVVPLLKKETTHLVKNANHFSESVALLSKCQSDFFD 103


>gi|240102208|ref|YP_002958516.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3]
 gi|239909761|gb|ACS32652.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3]
          Length = 276

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 7   ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E +R  +  L+      +VA SGG DS+  L     V     +   +  A+ +DH L   
Sbjct: 39  ERIRKELDELMKNVDKAIVAYSGGKDSVVALYLAKEV-----YKVPELEAVMIDHGL--M 91

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
           A++ +     +   L +   V+ +  S               A        + ++A    
Sbjct: 92  AEEAIENARRIAEHLGVPFRVLRYDYSDIFRNALLKGQSPCRACSRRTMEKLRKYAIRKG 151

Query: 119 ATLIMTAH 126
              I+T H
Sbjct: 152 YRYIITGH 159


>gi|241204874|ref|YP_002975970.1| C32 tRNA thiolase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858764|gb|ACS56431.1| PP-loop domain protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 289

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 21/236 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      LV +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 39  RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLKWRGLLPVELIACNLDQ 97

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +++ + H +       +  +         +     R   +  
Sbjct: 98  G-QPN---FPKHVLPDYLNKIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 153

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 154 VAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 209

Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +D+  F +         D   + D  +R  ++  + DI+      K    + L 
Sbjct: 210 AEDDLAKFAVAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALS 265


>gi|218682648|ref|ZP_03530249.1| hypothetical protein RetlC8_27903 [Rhizobium etli CIAT 894]
          Length = 290

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 21/236 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      LV +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 40  RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLQWRGLLPVELVACNLD- 97

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +++ + H +       +  +         +     R   +  
Sbjct: 98  QGQPN---FPKHVLPDYLTKIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 154

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 155 VAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 210

Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +D+  F           D   + D  +R  ++  + DI+      K    + L 
Sbjct: 211 AEDDLAKFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALS 266


>gi|218674152|ref|ZP_03523821.1| hypothetical protein RetlG_22787 [Rhizobium etli GR56]
          Length = 289

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 21/236 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      LV +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 39  RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLKWRGLLPVELIACNLDQ 97

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +R+ + H +       +  +         +     R   +  
Sbjct: 98  G-QPN---FPKHVLPDYLTRIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 153

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 154 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 209

Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +D+  F           D   + D  +R  ++  + DI+      K    + L 
Sbjct: 210 AEDDLAKFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALA 265


>gi|150015449|ref|YP_001307703.1| ExsB family protein [Clostridium beijerinckii NCIMB 8052]
 gi|149901914|gb|ABR32747.1| ExsB family protein [Clostridium beijerinckii NCIMB 8052]
          Length = 274

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 35/191 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +     V+ L     +++A SGG DS  LL      L D         A+++   L    
Sbjct: 5   DKYSELVKYLKGLGKVVLAFSGGVDSTFLLRVAKEALGD------NVKAVTI---LSPYI 55

Query: 67  KDEV-RYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATL 121
                    ++   L + H ++        +          + A+ +     AK      
Sbjct: 56  PKWEIAEARELVRELGVQHEIIEAPIIDSIKFNPEDRCYLCKTAVFTMILNVAKEQGYNC 115

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRS 179
           ++    FDD                   +S     +     L +  P L C   + +IR+
Sbjct: 116 VIDGTNFDD-------------------ISDYRPGLKALKELEVRSPLLECKLTKAEIRA 156

Query: 180 FLLQRNISWCE 190
           F  +  ++  +
Sbjct: 157 FSKELGLNTWD 167


>gi|116252368|ref|YP_768206.1| C32 tRNA thiolase [Rhizobium leguminosarum bv. viciae 3841]
 gi|205830621|sp|Q1MG13|TTCA_RHIL3 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|115257016|emb|CAK08110.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 289

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 21/236 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      LV +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 39  RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLKWRGLLPVELIACNLDQ 97

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +++ + H +       +  +         +     R   +  
Sbjct: 98  G-QPN---FPKHVLPDYLTKIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 153

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 154 VAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 209

Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +D+  F           D   + D  +R  ++  + DI+      K    + L 
Sbjct: 210 AEDDLAKFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALS 265


>gi|15806874|ref|NP_295597.1| GMP synthase [Deinococcus radiodurans R1]
 gi|13627172|sp|Q9RT91|GUAA_DEIRA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|6459656|gb|AAF11428.1|AE002027_1 GMP synthase [Deinococcus radiodurans R1]
          Length = 506

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 27/194 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE VR     +     +L+ +SGG DS  L + L   + +R       +A+ +DH  L
Sbjct: 199 ELIEGVRA---QVGDTGRVLLGISGGVDSSTLALLLAKAVGER------LTAVFIDHGLL 249

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R     E   V    + L +    V  K+         S P+       RE   A   E 
Sbjct: 250 RLG---EREQVEAALTPLGVNLVTVDAKDEFLGQLAGVSDPEQKRKIIGREFIRAFERET 306

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK  +   +     + D +E+             +        +  D+   +  PF    
Sbjct: 307 AKLGDFEFLAQGTLYPDVIES-----AGGEGAANIKSHHNVGGLPDDVQFKLVEPFRTLF 361

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 362 KDEVREIARLLGLP 375


>gi|226355410|ref|YP_002785150.1| GMP synthase [Deinococcus deserti VCD115]
 gi|259647676|sp|C1D0M2|GUAA_DEIDV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226317400|gb|ACO45396.1| putative GMP synthase [Deinococcus deserti VCD115]
          Length = 511

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 19/178 (10%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCS 78
             +L+ +SGG DS  L + L   + +R       +A+ +DH  LR     E   V     
Sbjct: 212 GRVLLGISGGVDSSTLALLLARAVGER------LTAVFIDHGLLRLG---EREQVEAALR 262

Query: 79  RLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            L +    V  +          S P+       RE   A   E AK  +   +     + 
Sbjct: 263 PLGVNLVTVDAREEFLGSLRGVSDPEQKRKIIGREFIRAFERETAKLGDFDFLAQGTLYP 322

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           D +E+             +        +  DL   +  PF    ++++R       + 
Sbjct: 323 DVIESAGGHHGDKSGAANIKSHHNVGGLPEDLKFKLVEPFRTLFKDEVREIAQLLGLP 380


>gi|269986991|gb|EEZ93267.1| PP-loop domain protein [Candidatus Parvarchaeum acidiphilum
           ARMAN-4]
          Length = 209

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 10/158 (6%)

Query: 74  SDVCSRLRIAHSVVSWKN----------SKPQTGLMAAAREARYALISEHAKTINATLIM 123
            + C+R  + + + S+K+             +    +A    R  LI+  A  ++A  + 
Sbjct: 2   EEYCNRYGVDYKIYSYKDFTGRTMDSITKTREGIPCSACGVLRRHLINYAASEVSADKVA 61

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           TAH  DD+ E V M   ++  EK + L      I     +   +PFL    ++   F + 
Sbjct: 62  TAHNMDDEAENVIMNLVQNDIEKMVRLGAYSGVIKEKGFVPRIKPFLFLSEKETMLFSML 121

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMK 221
            +I+    P        R  + R ++ ++   +  K  
Sbjct: 122 NDINAIHTPCPYAGMGLRGLISREIKRMETEFIGAKRN 159


>gi|11498919|ref|NP_070150.1| hypothetical protein AF1321 [Archaeoglobus fulgidus DSM 4304]
 gi|2649255|gb|AAB89924.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 287

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 42/234 (17%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           S++ F R L     +L+A+SGG DS  L   L  +             + +D  +   ++
Sbjct: 37  SIKRF-RILRPEERVLIAISGGKDSSALAAVLKEL-------DYDAELLYIDLGIGNYSE 88

Query: 68  DEVRYVSD------------VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
           +  R V +                       V+ K  +        A   RY +++  A+
Sbjct: 89  ESERVVRELSSSLDLSLNVVRLRDYGFTVDDVARKMRRKTCSACGTA--KRY-IMNRFAR 145

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-WISRPFLRCRR 174
             +  ++ T HT +D                   L  M     +D  +   ++P      
Sbjct: 146 ENSFDVVATGHTAEDIASFYIKNVAGGTRVWAEKL--MPRNEPFDEKIVTRAKPLFEVSE 203

Query: 175 EDIRSFLLQRNISW--CEDPS--NTD------------DRFERVRVRRFVRDID 212
           ++   ++L  +I     E P   N +              F +  VR  VR  +
Sbjct: 204 KENMLYVLVNDIPHTLMECPHAPNPEWKEIVYDIERRKPGFVKNFVRGLVRPAE 257


>gi|315185969|gb|EFU19733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Spirochaeta thermophila DSM 6578]
          Length = 376

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/197 (22%), Positives = 67/197 (34%), Gaps = 28/197 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSV-LSDRSFGKIKF-SAISVDHCLRETAKDEV 70
           +R    P  ++VA+SGG DS      L S  +       I+  +   VDH   E   +E 
Sbjct: 14  IRDTRRPRRLVVAMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAEVDH---EGFSEEA 70

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           R   +V S L I H V++  +      L  A  E R                +  +  +A
Sbjct: 71  RAAREVASHLGIEHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLCNRTLKFGHLVRYA 130

Query: 115 KT-INATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +  + A  I T H      D  E   +   R  A        +  T   DL      P  
Sbjct: 131 REVLRADGIATGHYARIYVD-AEG-CVHLLRGKAGTKEQSYFLAQTRPEDLRHAYF-PLG 187

Query: 171 RCRREDIRSFLLQRNIS 187
              + +IR++     I 
Sbjct: 188 DQTKNEIRTYARHHGIP 204


>gi|186510383|ref|NP_974358.2| RSY3 (RASPBERRY 3) [Arabidopsis thaliana]
 gi|332643400|gb|AEE76921.1| protein raspberry 3 [Arabidopsis thaliana]
          Length = 446

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID----L 213
           + + ++ + RP L   +ED+          W EDP+N    F R R+R  + +++     
Sbjct: 1   MKNQSIRLVRPLLDLWKEDMYKICQWGRQDWVEDPTNRSQLFVRNRIRTSIGNLESGSFK 60

Query: 214 HALYLKMKKFQDLRVKVNNAVAMLIPKYLTV-HMRSIIAISQDILNIDSTLLFYLLRVSA 272
             L   + + +  R  V+     LI + +TV   +    +  + LN        L +   
Sbjct: 61  SELQAVISECRRTRSFVDKVCTDLIHQTVTVTDQKGYAILDLERLNPSGVKDICLSKYLF 120

Query: 273 AI 274
           A+
Sbjct: 121 AV 122


>gi|213971917|ref|ZP_03400017.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|213923342|gb|EEB56937.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 194

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 22/203 (10%)

Query: 75  DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L + + +V                   +     R   +   A  I AT +   H 
Sbjct: 4   AYLKELGVEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADQIGATKMALGHH 63

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET ++    + A K M           D    + RP   C  +DI+++   +   
Sbjct: 64  RDDIIETFFLNMFFNGALKAM----PPKLRADDGRNVVIRPLAYCHEKDIQAYSDLKQFP 119

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
               P N     +    R+ V+D+ L        + + +   + N     +        R
Sbjct: 120 II--PCNLCGS-QENLQRQVVKDMLLDWERKTPGRTESIFRALQNVQPSQLAD------R 170

Query: 248 SIIAISQDILNIDSTLLFYLLRV 270
            +   SQ  L ID T     + V
Sbjct: 171 KLFDFSQ--LRIDETAASRFVNV 191


>gi|15894062|ref|NP_347411.1| PP family ATPase [Clostridium acetobutylicum ATCC 824]
 gi|15023660|gb|AAK78751.1|AE007592_12 ATP-utilizing enzyme of the PP-loop superfamily [Clostridium
           acetobutylicum ATCC 824]
 gi|325508189|gb|ADZ19825.1| ATP-utilizing enzyme of the PP-loop superfamily [Clostridium
           acetobutylicum EA 2018]
          Length = 271

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 35/191 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E  +  ++ L     +++A SGG DS  LL A    L D         A+++   L    
Sbjct: 5   EKYKELIKYLKSLGKVVLAFSGGVDSTFLLKASKEALGD------NVKAVTI---LSPYI 55

Query: 67  KDEV-RYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATL 121
                R   ++   L + H ++        +          + A+ S     AK      
Sbjct: 56  PKWEIREAEELVKELGVEHEIIKAPIIDSIKFNPEDRCYLCKTAVFSMILDAAKRQGYDC 115

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRS 179
           ++    FDD                   +      +     L +  P L C   + +IR+
Sbjct: 116 VIDGTNFDD-------------------IKDYRPGLRALKELSVKSPLLECKLTKAEIRT 156

Query: 180 FLLQRNISWCE 190
           F  +  +   +
Sbjct: 157 FSKELGLKTWD 167


>gi|330892523|gb|EGH25184.1| tRNA 2-thiocytidine biosynthesis protein TtcA [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 225

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 59/203 (29%), Gaps = 22/203 (10%)

Query: 75  DVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                L I + +V                   +     R   +   A  I AT +   H 
Sbjct: 35  AYLKELGIEYHIVEKDTYSVVKELIPEGKTTCSLCSRLRRGTLYTFADEIGATKMALGHH 94

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            DD +ET ++    + + K M           D    + RP   C  +DI+++   +   
Sbjct: 95  RDDIVETFFLNMFFNGSLKAM----PPKLRADDGRNVVIRPLAYCHEKDIQAYSDLKQFP 150

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMR 247
               P N     +    R+ V+D+ +         ++        ++   +       + 
Sbjct: 151 II--PCNLCGS-QENLQRQVVKDMLID--------WERKTPGRTESIFRALQNVQPSQLA 199

Query: 248 SIIAISQDILNIDSTLLFYLLRV 270
                    L ID T     + V
Sbjct: 200 DRNLFDFSNLRIDETAASRFVNV 222


>gi|257459826|ref|ZP_05624932.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
 gi|257442678|gb|EEV17815.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
          Length = 260

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 36/190 (18%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ +E ++  +R L     + VA SGG DS  LL A H  L  R+ G I           
Sbjct: 1   MTKLEKLKADLRGL---GELAVAFSGGVDSSLLLRAAHDALGARAIG-ITIR-------- 48

Query: 63  RET-AKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
               +  E+    +  S   I H +    V+ +            ++A ++ + E A+ +
Sbjct: 49  SPYMSSREIAEAVEFASIYGIRHEILELSVAERIKDNPENRCYLCKKAVFSRLIERAREL 108

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + +      DD  E                       +     L +  P +   + +I
Sbjct: 109 GFSHVADGTNRDDLGE-------------------HRPGLKAKEELGVLSPLINLTKSEI 149

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 150 RELSRELGLP 159


>gi|86357925|ref|YP_469817.1| hypothetical protein RHE_CH02310 [Rhizobium etli CFN 42]
 gi|123511794|sp|Q2K7U6|TTCA_RHIEC RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|86282027|gb|ABC91090.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 290

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 21/236 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      LV +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 40  RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLKWRGLLSVELIACNLD- 97

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +++ + H +       +  +         +     R   +  
Sbjct: 98  QGQPN---FPKHVLPDYLTKIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 154

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 155 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 210

Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +D+  F           D   + D  +R  ++  + DI+      K    + L 
Sbjct: 211 AEDDLARFAAAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALS 266


>gi|257126066|ref|YP_003164180.1| PP-loop domain protein [Leptotrichia buccalis C-1013-b]
 gi|257050005|gb|ACV39189.1| PP-loop domain protein [Leptotrichia buccalis C-1013-b]
          Length = 312

 Score = 67.6 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 14/186 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++++ F   +     I VA+SGG DS+ LL  L   L   S    +   IS++      
Sbjct: 69  VKALKEF-EMVKDGDRIAVAISGGKDSL-LLSKLFQELKRASRTNFEVVFISMNPGFN-- 124

Query: 66  AKDEVRYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
               +  +      L I   +             +        + R   +   A ++   
Sbjct: 125 -TANLNNLKKNLKHLNIPCEIYDDNIFEVAEKIAKDYPCYMCAKMRRGSLYTKATSLGCN 183

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +   H FDD +ET  M         G   + +      + ++ + RP      + I  +
Sbjct: 184 KLALGHHFDDVIETTLMSMF----YMGKFETMLPKLKSDNYDIELIRPLFYVEEKAIIKW 239

Query: 181 LLQRNI 186
           +    I
Sbjct: 240 VRNNGI 245


>gi|255321956|ref|ZP_05363106.1| conserved hypothetical protein [Campylobacter showae RM3277]
 gi|255301060|gb|EET80327.1| conserved hypothetical protein [Campylobacter showae RM3277]
          Length = 260

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 36/190 (18%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ +E ++  +R L     + VA SGG+DS  LL A H  L +R+ G I           
Sbjct: 1   MTKLEKLKADLRGL---GELAVAFSGGADSSLLLRAAHDALGERAIG-ITIR-------- 48

Query: 63  RET-AKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAREARYALISEHAKTI 117
               +  E+    +      I H +    V+ +            ++A ++ + E A+ +
Sbjct: 49  SPYMSSREIAEAVEFARIYGIRHEILELGVAEEIKDNPENRCYLCKKAVFSRLIERAREL 108

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + +      DD  E                       +     L +  P +   + +I
Sbjct: 109 GFSRVADGTNRDDLGE-------------------HRPGLKAKEELGVLSPLINLTKSEI 149

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 150 RELSRELGLP 159


>gi|162450853|ref|YP_001613220.1| putative ATPase [Sorangium cellulosum 'So ce 56']
 gi|205830635|sp|A9G6U6|TTCA_SORC5 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|161161435|emb|CAN92740.1| putative ATPase [Sorangium cellulosum 'So ce 56']
          Length = 283

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--------HCLRETAKDEV 70
              IL AVSGG DS  +  AL   L+ R+  +    A+++D        H L +      
Sbjct: 24  GDRILCAVSGGKDSYAM-HALLVDLARRAPVRFSVIAVNIDQGHPGYPGHLLTDYMAAGG 82

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                +       +S+V+ K  + +T   +     R  ++   A+ +  + I   H  DD
Sbjct: 83  HEFRMISED---TYSIVTEKIPENKT-YCSLCSRLRRGILYRIARELGCSKIALGHHRDD 138

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + T+ +         G   S     I  D +  + RP + C
Sbjct: 139 AVTTLLLNLI----FAGQLKSMPPKLISDDGDNIVIRPLIYC 176


>gi|332796753|ref|YP_004458253.1| GMP synthase domain-containing protein [Acidianus hospitalis W1]
 gi|332694488|gb|AEE93955.1| GMP synthase domain protein [Acidianus hospitalis W1]
          Length = 371

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 26/198 (13%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF   S IE V+  +   V    IL A+SGG DS    + ++ +L  +         I +
Sbjct: 1   MFNPESFIEEVKPQILKEVREEKILAAISGGVDSTTAAVLMYKILGKQLLP------IMI 54

Query: 59  DHC-LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREAR---YAL 109
           D   LR   KDE R V D+   + +   +V          +  +      ++ R   Y+ 
Sbjct: 55  DTGFLR---KDEARKVKDMLKDI-LPLQIVDKSEEFISALEGISDAEEKRKKFRDLFYST 110

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +S  AK      ++      D +ET     Q     +   L  +           +  P 
Sbjct: 111 LSAIAKEHGIRYLVQGTIAADWVET-----QGGIKTQHNVLVQLGIDTEKTWGFKVIEPL 165

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R+      + 
Sbjct: 166 ADLYKDEVRALARYLGLP 183


>gi|327190534|gb|EGE57628.1| hypothetical protein RHECNPAF_4260016 [Rhizobium etli CNPAF512]
          Length = 290

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 21/236 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      L+ +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 40  RLLRQVRQAFDDFDMLKGQKRWLIGLSGGKDS-YGLLALLLDLQWRGLLPVELIACNLDQ 98

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +R+ + H +       +  +         +     R   +  
Sbjct: 99  G-QPN---FPKHVLPDYLTRIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 154

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 155 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLIVLRPLAYA 210

Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +D+  F +         D   + D  +R  ++  + DI+      K    + L 
Sbjct: 211 AEDDLAKFAVAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALA 266


>gi|156937430|ref|YP_001435226.1| GMP synthase (glutamine-hydrolyzing) [Ignicoccus hospitalis KIN4/I]
 gi|156566414|gb|ABU81819.1| GMP synthase (glutamine-hydrolyzing) [Ignicoccus hospitalis KIN4/I]
          Length = 370

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 23/184 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R LV    +L AVSGG DS        + L+ ++ G  +   I +D    R+    E  
Sbjct: 15  IRELVGKEKVLAAVSGGVDSTT-----AAALAYKALGPEQIKVIFIDTGFMRKG---EPE 66

Query: 72  YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREAR---YALISEHAKTINATLIM 123
           +V +V   + +   +V      +   K  +      +  R   Y ++SE AK   A+ ++
Sbjct: 67  WVKNVLRDV-MPVEIVDAKERFFNAVKGLSDAEEKRKAFREVFYQVVSEEAKKWGASWLV 125

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
              T  D +ET           +   L  +   +       +  P +   ++++R+    
Sbjct: 126 QGTTAPDWIET-----TGGIKTQHNVLEQLGINVREKWGFKLLEPLVELYKDEVRAVARA 180

Query: 184 RNIS 187
             + 
Sbjct: 181 LGLP 184


>gi|52548479|gb|AAU82328.1| PP-ATPase subunit of GMP synthase [uncultured archaeon GZfos14B8]
          Length = 310

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 26/199 (13%)

Query: 1   MFL--SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     IE     V+  +     ++AVSGG DS    +  H  + DR        A+ +
Sbjct: 1   MFEPEKFIERQVDEVKETIGDGKAVIAVSGGVDSTVCAVLTHRAVGDR------LVAVFI 54

Query: 59  DHCL-RETAKDEVRYVSDV-----CSRLRIAHSVVSWKNSKPQTGLMAAAREAR---YAL 109
           D  L RE    E   V +       +  ++  +   +   K         +  R   Y++
Sbjct: 55  DDGLMREG---EAEQVMNFFKARNMNARQVDAANEFFDALKGIVDPEEKRKAFRNTFYSV 111

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           ++   +  NA  ++      D  ETV         +    +            L I  P 
Sbjct: 112 LARVVREENANCLVQGTIAADVAETV------KGIKTQHNILEQIGIDPGSYGLTIVEPL 165

Query: 170 LRCRREDIRSFLLQRNISW 188
               + ++R       +  
Sbjct: 166 REIYKPEVREVARSFGVPP 184


>gi|323165891|gb|EFZ51673.1| tRNA(Ile)-lysidine synthetase, C-terminal domain [Shigella sonnei
           53G]
          Length = 238

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 26/208 (12%)

Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDILNIDSTLLFYLLRV 270
           +  L  +   F +   +     A        +    +     SQ  L I   L     R 
Sbjct: 1   MPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQTSQGTLQIAPMLAMSDARR 60

Query: 271 SA----AICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR 323
           +A     + G    +P   ++ R+       +     C+  G   I R  + LW  ++V 
Sbjct: 61  AAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRFGAFEIRRYQSQLWWIKSVT 120

Query: 324 NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSM 380
                I+       W    Q   L   L  +   +      P     +  +     L  +
Sbjct: 121 GQSETIVP------WQTWLQPLELPAGLGSVQLTAGGDIRPPRADEAVSVRFKAPGLLHI 174

Query: 381 PSKEGGKPL--------LAPFSRFMTKF 400
             + GG+ L        + P+ R  T  
Sbjct: 175 VGRNGGRKLKKIWQELGVPPWLRDTTPL 202


>gi|82593996|ref|XP_725240.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480168|gb|EAA16805.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 955

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +LI   H  +D  ET+     R        L G+ + + Y  N  + RPF++  +  I +
Sbjct: 472 SLIFIGHHQNDNNETILFHFFRGIYIX--NLKGI-NFLTYFKNCLLYRPFIKLNKIHIYN 528

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
           ++      W  D SN      R  +R  +  
Sbjct: 529 YMYAIQKKWKYDISNQKLHSSRNFIRNILIP 559


>gi|163843104|ref|YP_001627508.1| PP-loop domain-containing protein [Brucella suis ATCC 23445]
 gi|205830560|sp|B0CLF8|TTCA_BRUSI RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|163673827|gb|ABY37938.1| PP-loop domain protein [Brucella suis ATCC 23445]
          Length = 293

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 28/196 (14%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  ++V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 43  QAIEDF--AMVKPGDRWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 95

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +R  I H +          +  P+T    +     R   +   A
Sbjct: 96  QPN---FPKHILPDFLTRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRIA 152

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + I+  H  +D LET +M            L+ M   +L D   L + RP     
Sbjct: 153 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 207

Query: 174 REDIRSFLLQRNISWC 189
            +D+  F         
Sbjct: 208 EDDLEKFANAMQFPII 223


>gi|190891996|ref|YP_001978538.1| hypothetical protein RHECIAT_CH0002406 [Rhizobium etli CIAT 652]
 gi|190697275|gb|ACE91360.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 290

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 21/236 (8%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      L+ +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 40  RLLRQVRQAFDDFDMLKGQKRWLIGLSGGKDS-YGLLALLLDLQWRGLLPVELIACNLDQ 98

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +R+ + H +       +  +         +     R   +  
Sbjct: 99  G-QPN---FPKHVLPDYLTRIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 154

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 155 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 210

Query: 173 RREDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +D+  F +         D   + D  +R  ++  + DI+      K    + L 
Sbjct: 211 AEDDLAKFAVAMQFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALA 266


>gi|148270897|ref|YP_001245357.1| ExsB family protein [Thermotoga petrophila RKU-1]
 gi|147736441|gb|ABQ47781.1| ExsB family protein [Thermotoga petrophila RKU-1]
          Length = 268

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 43/194 (22%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +  +R  + +L     ++V  SGG DS  L    H  L + S       A+++D      
Sbjct: 1   MSKIRKILEALKEKKKVVVMFSGGVDSTLLAKLTHEALGENS------VALTID------ 48

Query: 66  A----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAK 115
           +    + E+     +   + I H  +     K +  +          R+ R +++   AK
Sbjct: 49  SPVIPRKEIEKAKRLAGLIGIRHEFIELNELKSRHLIENPPDRCYLCRKLRDSVVKNWAK 108

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--R 173
                +I     F D                   L      +       I  PF+     
Sbjct: 109 EHGFEVIADGLNFSD-------------------LQDYRPGVKASTEDGIWHPFIEFEVT 149

Query: 174 REDIRSFLLQRNIS 187
           +E+IR F  + ++ 
Sbjct: 150 KEEIRDFSRKLSLP 163


>gi|217077353|ref|YP_002335071.1| ATPase, PP-loop superfamily [Thermosipho africanus TCF52B]
 gi|217037208|gb|ACJ75730.1| ATPase, PP-loop superfamily [Thermosipho africanus TCF52B]
          Length = 289

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 67/190 (35%), Gaps = 17/190 (8%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS----DRSFGKIKFSAISVDHCLRET 65
           +F  +  +    +LVA+SGG DS+ +   L  +         +  I+    +      E 
Sbjct: 32  KFLEKYKIKNKKLLVAISGGKDSVVVSYVLSKLKEKFNLQIEYFFIRLGIPTFT----EK 87

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTINA 119
           +++    V++    +    ++   K  +       +    +     R  +++++A   + 
Sbjct: 88  SEEIATRVTE---SINYPLTIYDLKKEEGFTIMDVKYKPCSYCGMIRRYILNKYAFENDF 144

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++  H  DD++  ++         +      +  TI     +   +P      E+I  
Sbjct: 145 DYVVLGHNLDDEVFFIFNNMFNKNITQLQRTGPLTQTIKEKKLVGRIKPLYFLTEEEILL 204

Query: 180 FLLQRNISWC 189
           +   +N+   
Sbjct: 205 YAKLKNLPHI 214


>gi|154270042|ref|XP_001535892.1| hypothetical protein HCAG_09200 [Ajellomyces capsulatus NAm1]
 gi|150413777|gb|EDN09157.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 297

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 1/130 (0%)

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRD 142
              +V +       G        R   ++  A  +    ++T H  DD  ET+ M   R 
Sbjct: 2   PLEIVGYVVRDRTKGNCTYCGVFRRQRLTGGAAKLGIGHVVTGHNADDVAETIVMNLLRG 61

Query: 143 YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              + +  S    T     ++  S+P      ++I  +   + + +            R 
Sbjct: 62  DLPR-LARSTNIVTESSASDIKRSKPLKYAYEKEIVLYAHYQKLCYFSTECIYSPEAFRG 120

Query: 203 RVRRFVRDID 212
             R  ++D++
Sbjct: 121 SARTLIKDLE 130


>gi|237829747|ref|XP_002364171.1| PP-loop domain-containing protein [Toxoplasma gondii ME49]
 gi|211961835|gb|EEA97030.1| PP-loop domain-containing protein [Toxoplasma gondii ME49]
 gi|221507032|gb|EEE32636.1| PP-loop domain-containing protein, putative [Toxoplasma gondii VEG]
          Length = 672

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 39/125 (31%)

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R       A+ I A ++ T H  DD  ET  M   R   ++               ++  
Sbjct: 310 RRQAFERGAQDIGADVLCTGHNADDGAETFLMNILRGDMQRLPVSGAPLTGSREGPSVMR 369

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +P L   + ++  +     + +            R  VR F+  +  +    ++     
Sbjct: 370 VKPLLASYQREVVLYAHFNRLDYFATECTYSGAAYRGLVRNFLSSLQDNQHQQRVLDLLH 429

Query: 226 LRVKV 230
              K+
Sbjct: 430 AARKL 434



 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 7   ESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + V  F+R          + V VSGG DS  LL  LH++ + R    +    ++VD  ++
Sbjct: 112 DDVSAFIRRFSLFQRGQKVAVCVSGGKDSAVLLHVLHTL-NAREDLGLSLHLLAVDEGIK 170

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSW 89
                 +  V        +   VVS+
Sbjct: 171 GYRDHALAAVRRNSEVYNLPLHVVSY 196


>gi|23501718|ref|NP_697845.1| C32 tRNA thiolase [Brucella suis 1330]
 gi|62289778|ref|YP_221571.1| C32 tRNA thiolase [Brucella abortus bv. 1 str. 9-941]
 gi|82699706|ref|YP_414280.1| C32 tRNA thiolase [Brucella melitensis biovar Abortus 2308]
 gi|148558840|ref|YP_001258807.1| hypothetical protein BOV_0824 [Brucella ovis ATCC 25840]
 gi|161618795|ref|YP_001592682.1| PP-loop domain-containing protein [Brucella canis ATCC 23365]
 gi|189024021|ref|YP_001934789.1| C32 tRNA thiolase [Brucella abortus S19]
 gi|225627324|ref|ZP_03785361.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|225852344|ref|YP_002732577.1| PP-loop domain-containing protein [Brucella melitensis ATCC 23457]
 gi|237815264|ref|ZP_04594262.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254689085|ref|ZP_05152339.1| PP family ATPase [Brucella abortus bv. 6 str. 870]
 gi|254697218|ref|ZP_05159046.1| PP family ATPase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701597|ref|ZP_05163425.1| PP family ATPase [Brucella suis bv. 5 str. 513]
 gi|254704144|ref|ZP_05165972.1| PP family ATPase [Brucella suis bv. 3 str. 686]
 gi|254706957|ref|ZP_05168785.1| PP family ATPase [Brucella pinnipedialis M163/99/10]
 gi|254709937|ref|ZP_05171748.1| PP family ATPase [Brucella pinnipedialis B2/94]
 gi|254713937|ref|ZP_05175748.1| PP family ATPase [Brucella ceti M644/93/1]
 gi|254717005|ref|ZP_05178816.1| PP family ATPase [Brucella ceti M13/05/1]
 gi|254718939|ref|ZP_05180750.1| PP family ATPase [Brucella sp. 83/13]
 gi|254730117|ref|ZP_05188695.1| PP family ATPase [Brucella abortus bv. 4 str. 292]
 gi|256031430|ref|ZP_05445044.1| PP family ATPase [Brucella pinnipedialis M292/94/1]
 gi|256113368|ref|ZP_05454222.1| PP family ATPase [Brucella melitensis bv. 3 str. Ether]
 gi|256257334|ref|ZP_05462870.1| PP family ATPase [Brucella abortus bv. 9 str. C68]
 gi|256264156|ref|ZP_05466688.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella melitensis
           bv. 2 str. 63/9]
 gi|256369261|ref|YP_003106769.1| hypothetical protein BMI_I830 [Brucella microti CCM 4915]
 gi|260168564|ref|ZP_05755375.1| PP family ATPase [Brucella sp. F5/99]
 gi|260545473|ref|ZP_05821214.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella abortus
           NCTC 8038]
 gi|260566608|ref|ZP_05837078.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella suis bv. 4
           str. 40]
 gi|261758036|ref|ZP_06001745.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella sp. F5/99]
 gi|265983927|ref|ZP_06096662.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella sp. 83/13]
 gi|294852186|ref|ZP_06792859.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella sp. NVSL
           07-0026]
 gi|297248182|ref|ZP_06931900.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella abortus bv.
           5 str. B3196]
 gi|306838830|ref|ZP_07471661.1| PP family ATPase [Brucella sp. NF 2653]
 gi|75496959|sp|Q57DS4|TTCA_BRUAB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|81752782|sp|Q8G189|TTCA_BRUSU RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|123546645|sp|Q2YNH1|TTCA_BRUA2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830558|sp|A9MAK8|TTCA_BRUC2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|205830559|sp|A5VQ10|TTCA_BRUO2 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254789869|sp|B2S568|TTCA_BRUA1 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|254789870|sp|C0RIG5|TTCA_BRUMB RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|23347643|gb|AAN29760.1| conserved hypothetical protein [Brucella suis 1330]
 gi|62195910|gb|AAX74210.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615807|emb|CAJ10808.1| conserved hypothetical protein [Brucella melitensis biovar Abortus
           2308]
 gi|148370097|gb|ABQ60076.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
 gi|161335606|gb|ABX61911.1| PP-loop domain protein [Brucella canis ATCC 23365]
 gi|189019593|gb|ACD72315.1| hypothetical protein BAbS19_I07940 [Brucella abortus S19]
 gi|225617329|gb|EEH14374.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|225640709|gb|ACO00623.1| PP-loop domain protein [Brucella melitensis ATCC 23457]
 gi|237790101|gb|EEP64311.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|255999421|gb|ACU47820.1| hypothetical protein BMI_I830 [Brucella microti CCM 4915]
 gi|260096880|gb|EEW80755.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella abortus
           NCTC 8038]
 gi|260156126|gb|EEW91206.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella suis bv. 4
           str. 40]
 gi|261738020|gb|EEY26016.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella sp. F5/99]
 gi|263094375|gb|EEZ18220.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264662519|gb|EEZ32780.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella sp. 83/13]
 gi|294820775|gb|EFG37774.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella sp. NVSL
           07-0026]
 gi|297175351|gb|EFH34698.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella abortus bv.
           5 str. B3196]
 gi|306406114|gb|EFM62362.1| PP family ATPase [Brucella sp. NF 2653]
 gi|326408852|gb|ADZ65917.1| C32 tRNA thiolase [Brucella melitensis M28]
          Length = 293

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 28/196 (14%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  ++V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 43  QAIEDF--AMVKPGDRWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 95

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +R  I H +          +  P+T    +     R   +   A
Sbjct: 96  QPN---FPKHILPDFLTRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRIA 152

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + I+  H  +D LET +M            L+ M   +L D   L + RP     
Sbjct: 153 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 207

Query: 174 REDIRSFLLQRNISWC 189
            +D+  F         
Sbjct: 208 EDDLEKFANAMQFPII 223


>gi|260754582|ref|ZP_05866930.1| PP-loop domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260757805|ref|ZP_05870153.1| PP-loop domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260761628|ref|ZP_05873971.1| PP-loop domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883609|ref|ZP_05895223.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella abortus bv.
           9 str. C68]
 gi|261218811|ref|ZP_05933092.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella ceti
           M13/05/1]
 gi|261314421|ref|ZP_05953618.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella
           pinnipedialis M163/99/10]
 gi|261317483|ref|ZP_05956680.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella
           pinnipedialis B2/94]
 gi|261321690|ref|ZP_05960887.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella ceti
           M644/93/1]
 gi|261752149|ref|ZP_05995858.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella suis bv. 5
           str. 513]
 gi|261754810|ref|ZP_05998519.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella suis bv. 3
           str. 686]
 gi|265988518|ref|ZP_06101075.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella
           pinnipedialis M292/94/1]
 gi|265994769|ref|ZP_06107326.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella melitensis
           bv. 3 str. Ether]
 gi|260668123|gb|EEX55063.1| PP-loop domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|260672060|gb|EEX58881.1| PP-loop domain-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674690|gb|EEX61511.1| PP-loop domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|260873137|gb|EEX80206.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella abortus bv.
           9 str. C68]
 gi|260923900|gb|EEX90468.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella ceti
           M13/05/1]
 gi|261294380|gb|EEX97876.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella ceti
           M644/93/1]
 gi|261296706|gb|EEY00203.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella
           pinnipedialis B2/94]
 gi|261303447|gb|EEY06944.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella
           pinnipedialis M163/99/10]
 gi|261741902|gb|EEY29828.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella suis bv. 5
           str. 513]
 gi|261744563|gb|EEY32489.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella suis bv. 3
           str. 686]
 gi|262765882|gb|EEZ11671.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella melitensis
           bv. 3 str. Ether]
 gi|264660715|gb|EEZ30976.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella
           pinnipedialis M292/94/1]
 gi|326538569|gb|ADZ86784.1| PP-loop domain protein [Brucella melitensis M5-90]
          Length = 274

 Score = 66.5 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 28/196 (14%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  ++V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 24  QAIEDF--AMVKPGDRWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 76

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +R  I H +          +  P+T    +     R   +   A
Sbjct: 77  QPN---FPKHILPDFLTRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRIA 133

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + I+  H  +D LET +M            L+ M   +L D   L + RP     
Sbjct: 134 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 188

Query: 174 REDIRSFLLQRNISWC 189
            +D+  F         
Sbjct: 189 EDDLEKFANAMQFPII 204


>gi|237843067|ref|XP_002370831.1| hypothetical protein TGME49_015100 [Toxoplasma gondii ME49]
 gi|211968495|gb|EEB03691.1| hypothetical protein TGME49_015100 [Toxoplasma gondii ME49]
          Length = 1555

 Score = 66.5 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 121  LIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++ AH   D++ET+ M+  R      +G +S +           + RPFL  ++  +  
Sbjct: 980  YVVMAHHAGDEMETLLMKLLRGAHITNLGGMSAVSGLSSQTPRFAVFRPFLSLQKAQLHR 1039

Query: 180  FLLQRNISWCEDPSNT 195
            ++     SW ED +N 
Sbjct: 1040 YVKALGGSWLEDETNA 1055



 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           P   L+  SGGSDS  LL A   + S R+    +  A  
Sbjct: 380 PPLFLLCCSGGSDSTALLHAFARLFSPRAVALRQ--ACH 416


>gi|261213832|ref|ZP_05928113.1| PP-loop domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915439|gb|EEX82300.1| PP-loop domain-containing protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 274

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 28/196 (14%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  ++V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 24  QAIEDF--AMVKPGDRWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 76

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +R  I H +          +  P+T    +     R+  +   A
Sbjct: 77  QPN---FPKHILPDFLTRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRHGNLYRIA 133

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + I+  H  +D LET +M            L+ M   +L D   L + RP     
Sbjct: 134 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 188

Query: 174 REDIRSFLLQRNISWC 189
            +D+  F         
Sbjct: 189 EDDLEKFANAMQFPII 204


>gi|254693568|ref|ZP_05155396.1| PP family ATPase [Brucella abortus bv. 3 str. Tulya]
          Length = 293

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 28/196 (14%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  ++V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 43  QAIEDF--AMVKPGDRWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 95

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +R  I H +          +  P+T    +     R+  +   A
Sbjct: 96  QPN---FPKHILPDFLTRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRHGNLYRIA 152

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + I+  H  +D LET +M            L+ M   +L D   L + RP     
Sbjct: 153 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 207

Query: 174 REDIRSFLLQRNISWC 189
            +D+  F         
Sbjct: 208 EDDLEKFANAMQFPII 223


>gi|209549539|ref|YP_002281456.1| C32 tRNA thiolase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535295|gb|ACI55230.1| PP-loop domain protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 290

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 23/237 (9%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      LV +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 40  RLLRQVRQAFDDFDMLKGQKRWLVGLSGGKDS-YGLLALLLDLQWRGLLPVELIACNLDQ 98

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +++ + H +       +  +         +     R   +  
Sbjct: 99  G-QPN---FPKHVLPDYLTKIGVQHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 154

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 155 VAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 210

Query: 173 RREDIRSFLLQRNISWCE--DPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
             +D+  F     +      D   + D  +R  ++  + DI+      K    + L 
Sbjct: 211 AEDDLAKFAAAM-LFPIIPCDLCGSQDGLQRNAMKDMLADIERRMPGRKDTMLRALS 266


>gi|268611361|ref|ZP_06145088.1| hypothetical protein RflaF_17909 [Ruminococcus flavefaciens FD-1]
          Length = 395

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 25/184 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +++   P  +++ +SGG DS+  L  L  +        +  +AI   H     +      
Sbjct: 16  IKNSPNP-RVIMMLSGGKDSIAALCFLKKL-------GLDVTAIHFIHKW--CSDIPTNE 65

Query: 73  VSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTA 125
              +C +L I   +  + N               A  ++  Y ++  +    +   +   
Sbjct: 66  AKRICQQLDIPLKIYDFTNEFYDSISGFTDGRPCALCKKNMYQILIGYLNENDYGWLCIG 125

Query: 126 HTFDDQLETVYMRSQR------DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            T +D+  T  MR +       D   +     G    +     + + RP +    +    
Sbjct: 126 DTSNDR--TTIMRMKSYISEHPDETLECSTYFGSEMGLKLPDGVKVVRPLIALTADQTEQ 183

Query: 180 FLLQ 183
           FL  
Sbjct: 184 FLKS 187


>gi|256060940|ref|ZP_05451098.1| PP family ATPase [Brucella neotomae 5K33]
 gi|261324940|ref|ZP_05964137.1| PP-loop family protein [Brucella neotomae 5K33]
 gi|261300920|gb|EEY04417.1| PP-loop family protein [Brucella neotomae 5K33]
          Length = 322

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 99/292 (33%), Gaps = 30/292 (10%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  ++V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 43  QAIEDF--AMVKPGDRWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLD-QG 95

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +R  I H +          +  P+T    +     R   +   A
Sbjct: 96  QPN---FPKHILPDFLTRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRIA 152

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + I+  H  +D LET +M            L+ M   +L D   L + RP     
Sbjct: 153 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 207

Query: 174 REDIRSFLLQRNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR-VKVN 231
            +D+  F           D   + D  +R  ++  + DI+      K    + L  V+ +
Sbjct: 208 EDDLEKFANAMQFPIIPCDLCGSQDGLQRNAMKAMLIDIEKRMPGRKDTMIRALTNVRPS 267

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283
           + +   +  +  +           +    + L       S +        P 
Sbjct: 268 HLLDRKLFDFAGLMANGEKGSDDALWRWTTRLAGGSSGRSGSQRNNAAFPPS 319


>gi|14602074|ref|NP_148620.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Aeropyrum pernix K1]
 gi|13627227|sp|Q9Y933|GUAA_AERPE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|5106156|dbj|BAA81467.1| GMP synthase [glutamine-hydrolyzing] [Aeropyrum pernix K1]
          Length = 512

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 67/195 (34%), Gaps = 25/195 (12%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +ESV+  V   +     + AVSGG DS    +     +  R +       + +DH
Sbjct: 204 MVSELVESVKKEVGDALA----VAAVSGGVDSTVAALIAKKAIGSRLYP------VFIDH 253

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTG-LMAAAR---EARYALISE 112
            L      EV  V  + SRL +   +V     +  +    G      R        ++  
Sbjct: 254 GLHPE--GEVERVVKLLSRLGLEPVMVDAGEEFLAALEGVGDPEEKRRVVGRVYAEVLER 311

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+ I A  ++    + D +E+      R      +        +  D+ L +  P    
Sbjct: 312 AARDIGAEYLVQGTIYPDVIES----GAR-PGADTIKTHHNVGGLPKDMRLKLVEPLRYF 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 367 YKDEVRLLAEKLGVP 381


>gi|218660342|ref|ZP_03516272.1| hypothetical protein RetlI_12334 [Rhizobium etli IE4771]
          Length = 267

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 20/197 (10%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      L+ +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 39  RLLRQVRQAFDDFDMLKGQKRWLIGLSGGKDS-YGLLALLLDLKWRGLLPVELIACNLDQ 97

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +R+ + H +       +  +         +     R   +  
Sbjct: 98  G-QPN---FPKHVLPDYLTRIGVRHRIEFRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 153

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+      ++  H  +D LET +M         G   S     +  + +L + RP    
Sbjct: 154 IAREEGCDALVLGHHREDILETFFMNFFHG----GRLASMPAKLLNDEGDLMVLRPLAYA 209

Query: 173 RREDIRSFLLQRNISWC 189
             +D+  F         
Sbjct: 210 AEDDLAKFAAAMQFPII 226


>gi|153009722|ref|YP_001370937.1| C32 tRNA thiolase [Ochrobactrum anthropi ATCC 49188]
 gi|205830606|sp|A6X1K4|TTCA_OCHA4 RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|151561610|gb|ABS15108.1| PP-loop domain protein [Ochrobactrum anthropi ATCC 49188]
          Length = 292

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 71/196 (36%), Gaps = 28/196 (14%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  S+V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 43  QAIEDF--SMVKPGERWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 95

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +R  I H +          +  P+T    +     R   +   A
Sbjct: 96  QPN---FPKHILPDFLNRYEIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRIA 152

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + I+  H  +D LET +M            L+ M   +L D   L + RP     
Sbjct: 153 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 207

Query: 174 REDIRSFLLQRNISWC 189
            +D+  F         
Sbjct: 208 EDDLEKFATAMQFPII 223


>gi|270686043|ref|ZP_06222854.1| YdaO protein [Haemophilus influenzae HK1212]
 gi|270316173|gb|EFA28151.1| YdaO protein [Haemophilus influenzae HK1212]
          Length = 156

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 13/138 (9%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-DVC 77
              ++V +SGG DS  LL  L ++       K    A+++D   +        +V  +  
Sbjct: 21  GDKVMVCLSGGKDSYTLLDILLNLQQSAPI-KFDIVAVNLD-QKQPG---FPEHVLPEYL 75

Query: 78  SRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDD 130
             + + + +V        K   P+     +     R  ++   A  + AT I   H  DD
Sbjct: 76  ESIGVDYKIVQENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDD 135

Query: 131 QLETVYMRSQRDYAEKGM 148
            L T+++        K M
Sbjct: 136 MLATLFLNMFYGGKMKSM 153


>gi|251798335|ref|YP_003013066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. JDR-2]
 gi|247545961|gb|ACT02980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. JDR-2]
          Length = 377

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 39/193 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +F      HC   TA+++   V
Sbjct: 9   RVVVGMSGGVDSSVTALLLKQQGYDVVGIFMKNWDDTDEFG-----HC---TAEEDAEDV 60

Query: 74  SDVCSRLRIAHSVVSW----------------KNSKPQTGLMAAAREARYALISEHAKTI 117
             VC ++ I +  V++                K  +     +   RE ++    + A  +
Sbjct: 61  RRVCDQIGIPYYTVNFEKQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGDFLKKANEL 120

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      ++  ET  +R      ++   LS +    L         P     
Sbjct: 121 GADYLATGHYARVERNEDGETRLLRGVDGNKDQTYFLSALNQKQLEKAMF----PIGHLP 176

Query: 174 REDIRSFLLQRNI 186
           + ++R    +  +
Sbjct: 177 KPEVRRIAEEAGL 189


>gi|288818620|ref|YP_003432968.1| GMP synthase [Hydrogenobacter thermophilus TK-6]
 gi|288788020|dbj|BAI69767.1| GMP synthase [Hydrogenobacter thermophilus TK-6]
 gi|308752211|gb|ADO45694.1| GMP synthase, large subunit [Hydrogenobacter thermophilus TK-6]
          Length = 507

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 23/184 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++S V    ++ A+SGG DS       +  + +          I VDH  LR+    EV+
Sbjct: 207 IKSTVKDGKVICALSGGVDSTVAATLTYKAIGN------NLKCIFVDHGLLRKG---EVQ 257

Query: 72  YVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYAL---ISEHAKTINATLIM 123
            V      L +    V  K       +         R   Y       E AK + A  ++
Sbjct: 258 EVEGYFRSLSLPFKTVDAKELFLSRLRGVEDPEEKRRIVGYTFIEVFEEEAKKVGADFLL 317

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+           K +        +   L + +  P     ++++R     
Sbjct: 318 QGTLYPDVVES-----AGLPGAKVIKTHHNVGGLPERLGIKLLEPLRELFKDEVRQIGRS 372

Query: 184 RNIS 187
             + 
Sbjct: 373 LGLP 376


>gi|76664790|emb|CAJ17834.1| MesJ protein [Candidatus Phytoplasma solani]
          Length = 75

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           L      +++VSGG DSM LL  L S        K+    +  +H  R  +  +   V 
Sbjct: 6  KLDPKLTYIISVSGGVDSMALLDFLWS-------QKLDLKVVHFNHLKRLDSFKDKELVK 58

Query: 75 DVCSRLRIAHS 85
          + C +L+I   
Sbjct: 59 NYCLQLKIPFH 69


>gi|237756395|ref|ZP_04584939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691446|gb|EEP60510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 352

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 61/194 (31%), Gaps = 35/194 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----------AISVDHCLRETAKDE 69
             ++V +SGG DS      L     +     +KF+                     +  +
Sbjct: 2   KKVVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCEVDTQVCC--------SDKD 53

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEH 113
           +     V   L I H V++WK+   +                   +   RE +  L +++
Sbjct: 54  ILDAKKVAEFLEIPHYVINWKDIFEKKVINYFIEGYKSGLTPNPCSICNREVKTGLFAKY 113

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K++    + T H     +E      +R   +       M   +  ++   +  P     
Sbjct: 114 IKSLGFDYLATGHYIRTDIEDGVKVLKRGIDKNKDQSYFMA-LVEREVVDTLIFPLGNLT 172

Query: 174 REDIRSFLLQRNIS 187
           +E++R    +  I 
Sbjct: 173 KEEVRKIAQENKIP 186


>gi|18314022|ref|NP_560689.1| GMP synthase [Pyrobaculum aerophilum str. IM2]
 gi|21759181|sp|Q8ZT92|GUAA_PYRAE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|18161600|gb|AAL64871.1| GMP synthetase (glutamine-hydrolysing) [Pyrobaculum aerophilum str.
           IM2]
          Length = 505

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 26/189 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +RS V    ++V VSGG DS    + L+  +  R        A+ +DH L RE   +E  
Sbjct: 204 IRSRVKGGDVIVGVSGGVDSTVTAVLLYKAVGQR------VKAVFIDHGLFREGEPEEA- 256

Query: 72  YVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTI-NATLI 122
             + +   + I    +  K    K   G+     + R        + S+  K + N   +
Sbjct: 257 --ASLLKSIGIDVVYIDAKERFLKRLEGVADCEEKRRIIGETFAEVFSDAVKQMPNVKYL 314

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+             +        +     L +  P     ++++R    
Sbjct: 315 AQGTLYPDVVES-----GAVKGADKIKSHHNVGGLPPWFQLELIEPLREFYKDEVRRIAK 369

Query: 183 QRNISWCED 191
              +   ED
Sbjct: 370 ALGLP--ED 376


>gi|15643726|ref|NP_228774.1| hypothetical protein TM0966 [Thermotoga maritima MSB8]
 gi|222100584|ref|YP_002535152.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359]
 gi|4981504|gb|AAD36045.1|AE001759_9 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|221572974|gb|ACM23786.1| PP-loop domain protein [Thermotoga neapolitana DSM 4359]
          Length = 268

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 43/197 (21%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++ ++    ++     ++V  SGG DS  L      VL           A+++D      
Sbjct: 1   MDKLQRISEAIKSKKKLVVMFSGGVDSTLLAKLAREVLGK------NAVALTID------ 48

Query: 66  A----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAK 115
           +    + E+    ++ + + I H  +     K +  +          R+ R  ++   A+
Sbjct: 49  SPVIPRKEIEEAKNLANLIGIRHEFIELNELKSRHLIENPPDRCYLCRKLRDNIVKNWAR 108

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--R 173
                +I     F D                   L      +       I  PF+     
Sbjct: 109 ENGFDVIADGLNFSD-------------------LQDYRPGVKASTEDGIWHPFIDFEVT 149

Query: 174 REDIRSFLLQRNISWCE 190
           +E+IR +  +  +   +
Sbjct: 150 KEEIREYSKKLGLPTWD 166


>gi|70948260|ref|XP_743666.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56523273|emb|CAH77386.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 888

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           LI   H  +D  ET+     R    K   L G+   + Y  +    RPF++  +  I ++
Sbjct: 387 LIFIGHHQNDNNETMLFHFFRGIYIK--NLKGI-RFLTYFKDCLFYRPFIKLNKIQIYNY 443

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +      W  D SN      R  +R  +   ++  ++ K K+         N V      
Sbjct: 444 MYVIKKKWKYDISNHKLSVSRNFIRNVIVP-NISLIFQKNKQNIKTVESFPNNVQAGQGS 502

Query: 241 YLTVH 245
            LT+H
Sbjct: 503 ELTIH 507


>gi|70937718|ref|XP_739629.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56516768|emb|CAH84248.1| hypothetical protein PC300936.00.0 [Plasmodium chabaudi chabaudi]
          Length = 372

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           LI   H  +D  ET+     R    K   L G+   + Y  +    RPF++  +  I ++
Sbjct: 99  LIFIGHHQNDNNETMLFHFFRGIYIK--NLKGI-RFLTYFKDCLFYRPFIKLNKIQIYNY 155

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           +      W  D SN      R  +R  +   ++  ++ K K+         N V      
Sbjct: 156 MYVIKKKWKYDISNHKLSVSRNFIRNVIVP-NISLIFQKNKQNIKTVESFPNNVQAGQGS 214

Query: 241 YLTVH 245
            LT+H
Sbjct: 215 ELTIH 219


>gi|148642542|ref|YP_001273055.1| PP family ATPase [Methanobrevibacter smithii ATCC 35061]
 gi|148551559|gb|ABQ86687.1| ATP-utilizing enzyme, PP-loop superfamily [Methanobrevibacter
           smithii ATCC 35061]
          Length = 336

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 50/198 (25%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H-- 60
             +E V+  +++      + +A SGG+DS  L      V  D         AI++D H  
Sbjct: 5   EKVEKVKNTLKN----RKVAIAFSGGADSTLLAYLASEVSDDP-------IAITIDNHIF 53

Query: 61  --CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISE 112
                      +++         I H ++     + +  L          R+  Y  I +
Sbjct: 54  PTGF-------IKHCKKTAKEFGIRHQIIDLNFYEHENLLANKSDRCFVCRDLMYGNIKK 106

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR- 171
           +A+      ++  +   D +        R               I Y  N  I  PF+  
Sbjct: 107 YAEKNGYESVLDGNNISDLV------LDRPGIL-----------ITYKNN--IESPFIHA 147

Query: 172 -CRREDIRSFLLQRNISW 188
               ++I  +L + +I +
Sbjct: 148 KLTSKEIHEYLNRHSIPF 165


>gi|223038753|ref|ZP_03609046.1| conserved hypothetical protein [Campylobacter rectus RM3267]
 gi|222880155|gb|EEF15243.1| conserved hypothetical protein [Campylobacter rectus RM3267]
          Length = 260

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 36/190 (18%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ +E +   +R L     + VA SGG+DS  LL A H  L  R+ G I           
Sbjct: 1   MTKLEKLEADLRGL---GELAVAFSGGADSSLLLRAAHGALDARAIG-ITIR-------- 48

Query: 63  RET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTI 117
               +  E+    +      I H ++    ++  +          + A+ S     A+ +
Sbjct: 49  SPYMSSREIAEAVEFARAYGIRHEILELGVAEGIKNNPENRCYLCKKAVFSRLIERAREL 108

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + +      DD  E                       +     L +  P +   + +I
Sbjct: 109 GFSRVADGTNRDDLGE-------------------YRPGLKAKEELGVLSPLINLTKSEI 149

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 150 RELSRELGLP 159


>gi|170289597|ref|YP_001739835.1| PP-loop domain-containing protein [Thermotoga sp. RQ2]
 gi|170177100|gb|ACB10152.1| PP-loop domain protein [Thermotoga sp. RQ2]
          Length = 268

 Score = 65.7 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 43/197 (21%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++ ++    ++     ++V  SGG DS  L    +  L           A+++D      
Sbjct: 1   MDKLQRISEAIKSKKKLVVMFSGGVDSTLLAKLAYEALGK------NAVALTID------ 48

Query: 66  A----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAK 115
           +    + E+    ++ + + I H  +     K +  +          R+ R  ++   A+
Sbjct: 49  SPVIPRKEIEEAKNLANLIGIRHEFIELNELKSRHLIENPPDRCYLCRKLRDNIVKNWAR 108

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--R 173
                +I     F D                   L      +       I  PF+     
Sbjct: 109 ENGFDVIADGLNFSD-------------------LQDYRPGVKASTEDGIWHPFIDFEVT 149

Query: 174 REDIRSFLLQRNISWCE 190
           +E+IR +  +  +   +
Sbjct: 150 KEEIREYSRKLGLPTWD 166


>gi|310659055|ref|YP_003936776.1| pp-loop superfamily ATP-utilizing protein [Clostridium sticklandii
           DSM 519]
 gi|308825833|emb|CBH21871.1| ATP-utilizing enzyme of the PP-loop superfamily (modular protein)
           [Clostridium sticklandii]
          Length = 428

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 48/199 (24%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI----- 56
            +  +E ++ +++       ++VA SGG DS  L+     VL D      +  A+     
Sbjct: 166 LIKKVEDIKNYIK---KDKKVVVAFSGGVDSSLLINLCKEVLKD------EVVAVTVKGP 216

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALI 110
            +       +  E      + + + I H +V       +       R   Y        I
Sbjct: 217 HI-----PES--EFNEAVKLANAIGIKHEIVEEDILSIKEVREGDLRRCYYCKSFVFKYI 269

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            ++AK I A+ +      DD                   LS     +     L +  PFL
Sbjct: 270 DDYAKKIGASAVYDGSNIDD-------------------LSDYRPGMQALEELHVKSPFL 310

Query: 171 --RCRREDIRSFLLQRNIS 187
                + DIR +     + 
Sbjct: 311 ETNWTKSDIREYSKLLGLK 329


>gi|300864184|ref|ZP_07109071.1| tRNA(Ile)-lysidine synthase (fragment) [Oscillatoria sp. PCC 6506]
 gi|300337817|emb|CBN54217.1| tRNA(Ile)-lysidine synthase (fragment) [Oscillatoria sp. PCC 6506]
          Length = 166

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 14/164 (8%)

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV--------RDIDLHALYLKM 220
            L   R    +F  ++N+   ED +N D ++ R R+R  +              AL    
Sbjct: 1   MLEITRTQTGAFCQEQNLEIWEDSTNHDLKYARNRIRAELLPYLQTHFNPQAEQALAQTA 60

Query: 221 KKFQDLRVKVNNAVAML-IPKYLTVHMRSIIAISQDILN-IDSTLLFYLLRVSAAICGGQ 278
           +  +     +  A + L +    +  +     I++ ILN +   L   +LR         
Sbjct: 61  ELLRADTDYLAIAASELCLQASFSNSLDGKYRINRHILNGVHLALQRRVLRQLLQEI--L 118

Query: 279 ISLPGYRSMERVMLFLKSGKRGCVS--IGRVVIDRRANFLWITR 320
              P +  +E++   + +  R   +   G  +      ++  T+
Sbjct: 119 PVSPSFVHIEKIRELISAPNRSQTAPFPGGAIAIVEGQWIIFTK 162


>gi|17987415|ref|NP_540049.1| C32 tRNA thiolase [Brucella melitensis bv. 1 str. 16M]
 gi|256044507|ref|ZP_05447411.1| PP family ATPase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563861|ref|ZP_05834347.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella melitensis
           bv. 1 str. 16M]
 gi|81851747|sp|Q8YGM6|TTCA_BRUME RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA
 gi|17983105|gb|AAL52313.1| atpases of the pp superfamily [Brucella melitensis bv. 1 str. 16M]
 gi|260153877|gb|EEW88969.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella melitensis
           bv. 1 str. 16M]
          Length = 293

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 28/196 (14%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  ++V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 43  QAIEDF--AMVKPGDRWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 95

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +R  I H +          +  P+T    +     R   +   A
Sbjct: 96  QPN---FPKHILPDFLTRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRIA 152

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + I+  H  +D LET +M            L+ M   +L D   L + RP     
Sbjct: 153 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 207

Query: 174 REDIRSFLLQRNISWC 189
            +D+  F         
Sbjct: 208 EDDLEKFANAMQFPII 223


>gi|14521954|ref|NP_127431.1| hypothetical protein PAB1152 [Pyrococcus abyssi GE5]
 gi|5459174|emb|CAB50660.1| Predicted ATPase of the PP-loop superfamily [Pyrococcus abyssi GE5]
          Length = 274

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 16/128 (12%)

Query: 7   ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E +R  +  ++      +VA SGG DS   L         +    I   A+ VDH     
Sbjct: 39  EKIREELEEILRKVDKAIVAYSGGKDSTVALYL------AKVKYGIDVEAVMVDHGF--M 90

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
           A   +     +   L +  +++    S                  +    ++ ++A    
Sbjct: 91  ASQAIENAKRIAEHLNVPLTIIKKDYSDIFREALLKAKSPCRKCSKRTMEILRKYAIEHG 150

Query: 119 ATLIMTAH 126
              I+T H
Sbjct: 151 YRYIITGH 158


>gi|265990931|ref|ZP_06103488.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263001715|gb|EEZ14290.1| tRNA 2-thiocytidine biosynthesis protein ttcA [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 274

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 22/193 (11%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +++  F  ++V P    +V +SGG DS   L+AL   L  R    ++  A+++D   +  
Sbjct: 24  QAIEDF--AMVKPGDRWMVCLSGGKDS-YGLLALLLDLKWRGLLPVELLAVNLDQG-QPN 79

Query: 66  AKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTI 117
                +++  D  +R  I H +          +  P+T    +     R   +   A+  
Sbjct: 80  ---FPKHILPDFLTRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRIAREE 136

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRRED 176
             + I+  H  +D LET +M            L+ M   +L D   L + RP      +D
Sbjct: 137 GCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAAEDD 191

Query: 177 IRSFLLQRNISWC 189
           +  F         
Sbjct: 192 LEKFANAMQFPII 204


>gi|281413177|ref|YP_003347256.1| NAD synthase [Thermotoga naphthophila RKU-10]
 gi|281374280|gb|ADA67842.1| NAD synthase [Thermotoga naphthophila RKU-10]
          Length = 268

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 43/194 (22%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++ ++    ++     ++V  SGG DS  L      VL           A+++D      
Sbjct: 1   MDKLQRISEAIKSKKKLVVMFSGGVDSTLLAKLAREVLEK------NAVALTID------ 48

Query: 66  A----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAK 115
           +    + E+    ++ + + I H  +     K +  +          R+ R  ++   A+
Sbjct: 49  SPVIPRKEIEEAKNLANLIGIRHEFIELNELKSRHLIENPPDRCYLCRKLRDNIVKNWAR 108

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--R 173
                +I     F D                   L      +       I  PF+     
Sbjct: 109 ENGFDVIADGLNFSD-------------------LQDYRPGVKASTEDGIWHPFIDFEVT 149

Query: 174 REDIRSFLLQRNIS 187
           +E+IR +  +  + 
Sbjct: 150 KEEIREYSRKLGLP 163


>gi|239831714|ref|ZP_04680043.1| PP-loop domain-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823981|gb|EEQ95549.1| PP-loop domain-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 292

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 70/195 (35%), Gaps = 26/195 (13%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  S+V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 43  QAIEDF--SMVKPGERWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 95

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D  +R  I H +          +  P+T    +     R   +   A
Sbjct: 96  QPN---FPKHILPDFLNRYEIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRVA 152

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +    + ++  H  +D LET +M         G   +     +  + +L + RP      
Sbjct: 153 REEGCSAVVLGHHREDILETFFMNLFHG----GRLAAMPPKLVNDEGDLMVFRPLAYAAE 208

Query: 175 EDIRSFLLQRNISWC 189
           +D+  F         
Sbjct: 209 DDLEKFATAMQFPII 223


>gi|57641486|ref|YP_183964.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57159810|dbj|BAD85740.1| predicted ATPase, PP-loop superfamily [Thermococcus kodakarensis
           KOD1]
          Length = 276

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 7   ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E +R  +  L+      +VA SGG DS+  L     V     +   +  A+ VDH L   
Sbjct: 39  EKIRRELDELMEKVDRAIVAYSGGKDSVVALYLAKEV-----YKVPELEAVMVDHGL--M 91

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
           A++ +     +   L +   ++ +  S               A        + ++A    
Sbjct: 92  AEEAIENARRMAEALGVLFKILRYDYSDIFREALLKAQSPCRACSRRTMERLRKYALKNG 151

Query: 119 ATLIMTAH 126
              I+T H
Sbjct: 152 YRYIITGH 159


>gi|297716304|ref|XP_002834470.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like, partial
           [Pongo abelii]
          Length = 178

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + V  SGG DS  L   L ++        I    ++VD  +       +  V    +R  
Sbjct: 38  VAVGASGGKDSTVLAHVLRALAPRLG---ISLQLVAVDEGIGGYRDAALAAVRRQAARWE 94

Query: 82  IAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLIMTA 125
           +  +VV++++      + A AR                  R   + E A+ + AT I+T 
Sbjct: 95  LPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRVGATHIVTG 154


>gi|302035850|ref|YP_003796172.1| putative P-loop ATPase [Candidatus Nitrospira defluvii]
 gi|300603914|emb|CBK40246.1| putative PP-loop ATPase, YdaO-related [Candidatus Nitrospira
           defluvii]
          Length = 287

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 22/224 (9%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R +     ++V +SGG DS GLL  L S+ S R+       A+++D   +        +V
Sbjct: 37  RMIEDGDKVMVCLSGGKDSHGLLEILLSIRS-RAPIHFDIIAVNLD-QKQPG---FPAHV 91

Query: 74  S-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             +  +R  +   +       V  +         +     R   +   A  + AT I   
Sbjct: 92  LPEYLTRRGVPFHIETRDTYSVVKRLIPEGQTTCSLCSRLRRGHLYRLATELGATKIALG 151

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQ 183
           H  +D L                G        L   +    + RP    +  D+  +   
Sbjct: 152 HHRNDIL------ETLLLNLLFTGKMKAMPPKLRSKSGRHVVIRPLAYVKEADLARYAAL 205

Query: 184 RNISWC-EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
                   D   + +  +R +V+  ++D D          F  L
Sbjct: 206 LQFPIIPCDLCGSQEDLKRKQVKALLQDWDQRFPGSNDSMFAAL 249


>gi|317011239|gb|ADU84986.1| GMP synthase [Helicobacter pylori SouthAfrica7]
          Length = 508

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKISNAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREAR----YALISEHAKTIN----A 119
            V  +   L+I  + +  K                R+           + AK  +     
Sbjct: 254 RVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEAFEKEAKKHHLKGKI 313

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ + + +     +  P     ++++RS
Sbjct: 314 EFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFK----LIEPLRELFKDEVRS 369

Query: 180 FLLQRNIS 187
              +  +S
Sbjct: 370 LGKELGVS 377


>gi|306841933|ref|ZP_07474611.1| PP family ATPase [Brucella sp. BO2]
 gi|306843768|ref|ZP_07476367.1| PP family ATPase [Brucella sp. BO1]
 gi|306275959|gb|EFM57672.1| PP family ATPase [Brucella sp. BO1]
 gi|306287966|gb|EFM59374.1| PP family ATPase [Brucella sp. BO2]
          Length = 293

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 28/196 (14%)

Query: 7   ESVRFFVRSLVYPA-HILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAISVDHCL 62
           +++  F  ++V P    +V +SGG DS        AL   L  R    ++  A+++D   
Sbjct: 43  QAIEDF--AMVKPGDRWMVCLSGGKDS----YGLLALLLDLKWRGLLPVELLAVNLDQG- 95

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHA 114
           +       +++  D   R  I H +          +  P+T    +     R   +   A
Sbjct: 96  QPN---FPKHILPDFLMRYGIEHRIEYQDTYSIVTDKLPETSTYCSLCSRLRRGNLYRIA 152

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCR 173
           +    + I+  H  +D LET +M            L+ M   +L D   L + RP     
Sbjct: 153 REEGCSAIVLGHHREDILETFFMNLFHGGR-----LAAMPPKLLNDEGDLMVFRPLAYAA 207

Query: 174 REDIRSFLLQRNISWC 189
            +D+  F         
Sbjct: 208 EDDLEKFANAMQFPII 223


>gi|119872114|ref|YP_930121.1| GMP synthase [Pyrobaculum islandicum DSM 4184]
 gi|119673522|gb|ABL87778.1| GMP synthase (glutamine-hydrolyzing) [Pyrobaculum islandicum DSM
           4184]
          Length = 505

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    I++ VSGG DS  + + +H  + +R+       A+ +DH L RE    E  
Sbjct: 204 IRKEVKDGDIIIGVSGGVDSTVVAVLVHMAVGERAK------AVFIDHGLFREG---EPE 254

Query: 72  YVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATLI 122
            V  + + L I    V  +    K   G+     + R        + +E          +
Sbjct: 255 QVVKLLNSLGIKVYYVDARERFLKRLEGVSDCEEKRRIIGETFAEVFTETLSKFPEVKYL 314

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+             +        +    NL +  P     ++++R    
Sbjct: 315 AQGTLYPDVIES-----GAVKGADKIKSHHNVGGLPRWFNLKLIEPLREFYKDEVRKLAR 369

Query: 183 QRNIS 187
              + 
Sbjct: 370 ALGLP 374


>gi|303233021|ref|ZP_07319700.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Atopobium vaginae PB189-T1-4]
 gi|302480892|gb|EFL43973.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Atopobium vaginae PB189-T1-4]
          Length = 566

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V  + +++A+SGG DS  +   +H  + +      + + + V+H  LR   KDE  
Sbjct: 246 IRATVGKSRVILALSGGVDSSVVAALMHRAIGN------QLTCVFVNHGFLR---KDEPE 296

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYA----LISEHAK----TI 117
            V +    +  +    V  +    +     T      R            E AK      
Sbjct: 297 LVEEVFHKQFNVPLVHVHAEERYLELLRDVTDPEEKRRRIGTEFWKVFFEEAAKLSSGKE 356

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRRE 175
               +     + D +E+      R    K   +    + I +   +   +  P     ++
Sbjct: 357 PIRYLAQGTIYPDIIES----GARKTGGKASTIKSHHNLIPFPEGVHFDLIEPLDHFFKD 412

Query: 176 DIRSFLLQRNIS 187
           ++R+      + 
Sbjct: 413 EVRALGCALGLP 424


>gi|146328716|ref|YP_001209536.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Dichelobacter nodosus VCS1703A]
 gi|205816915|sp|A5EVB4|MNMA_DICNV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146232186|gb|ABQ13164.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Dichelobacter nodosus VCS1703A]
          Length = 376

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 37/206 (17%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDHCLRETAKDE 69
                + I V +SGG DS      L     D         +  FS+         +A ++
Sbjct: 7   QAPQGSTIAVGMSGGVDSSVTAYLLKKQGYDVFGIFMKNWEETFSSGYC------SAAED 60

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGL-----MAAA-----------REARYALISEH 113
           +    DVC  L I    V++                 A           RE ++A ++ +
Sbjct: 61  LEDARDVCQTLDIPLHTVNFVQQYHDRVFQLFLDEYRAGRTPNPDVLCNREIKFAELALY 120

Query: 114 AKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A+ + A  + T H       D  E    +      ++   L  +    L         P 
Sbjct: 121 AQQLGADFLATGHYAQRLQSDNHEAALFKGVDAQKDQSYFLHQITPAQLNKA----IFPL 176

Query: 170 LRCRREDIRSFLLQRNISWCE--DPS 193
              +++ +R+   +R ++  +  D +
Sbjct: 177 GGLQKKQVRAIARERGLTTFDKKDST 202


>gi|188527826|ref|YP_001910513.1| GMP synthase [Helicobacter pylori Shi470]
 gi|226739632|sp|B2UUF1|GUAA_HELPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|188144066|gb|ACD48483.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori Shi470]
          Length = 508

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREAR----YALISEHAKTIN----A 119
            V  +   L+I  + +  K                R+           + AK  +     
Sbjct: 254 KVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEAFEKEAKKHHLKGKI 313

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ + + +     +  P     ++++R 
Sbjct: 314 EFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFK----LIEPLRELFKDEVRL 369

Query: 180 FLLQRNIS 187
              +  IS
Sbjct: 370 LGKELGIS 377


>gi|212224909|ref|YP_002308145.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
 gi|212009866|gb|ACJ17248.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 276

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 7   ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E++R  +  L+      ++A SGG DS   L     V     +   +  A+ +DH L   
Sbjct: 39  EAIRQELDDLMKKVDKAILAFSGGKDSTVALYLAKEV-----YKVPELEAVMIDHGL--M 91

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
           A++ +     +   L +   ++ +  S                  +     + ++A    
Sbjct: 92  AEEAIENAKRIAEHLNVPFRILRYDYSDIFREALLKAESPCRRCSKRTMERLRKYALKKG 151

Query: 119 ATLIMTAH 126
              I+T H
Sbjct: 152 YHYIITGH 159


>gi|11499151|ref|NP_070385.1| hypothetical protein AF1556 [Archaeoglobus fulgidus DSM 4304]
 gi|2649005|gb|AAB89691.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 274

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 60/198 (30%), Gaps = 39/198 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E++  F++       +L+A SGG DS  L     +         ++  A++V   L 
Sbjct: 14  KKLENLNHFIQQF---EKVLIAFSGGVDSSTLAAVCSN-------AGVEVLAVTV---LS 60

Query: 64  ETA-KDEVRYVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTI 117
             + + E+     +   L + H  +          +         +    + + E AK  
Sbjct: 61  SVSPRREMEEAKRIAEELGVRHEFLKIDLMDEDFRRNDENRCYYCKRRVLSALVEEAKKR 120

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RRE 175
              +++      D                                  ++ P++     +E
Sbjct: 121 GIEVVLEGTNASDL------------------SDHRPGYRAVRELDGVNSPWVEFGITKE 162

Query: 176 DIRSFLLQRNISWCEDPS 193
           +IR        S+ + PS
Sbjct: 163 EIREIARSMGYSFHDKPS 180


>gi|19705225|ref|NP_602720.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|81479885|sp|Q8R5Z5|MNMA2_FUSNN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|19713176|gb|AAL94019.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 343

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 25/188 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   I+++  L E +KD +     VC +
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGITLNQHLEENSKD-IEDTKKVCDK 53

Query: 80  LRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKTINATLIM 123
           L I H VV+ +               NS            E ++ ++ + A   NA  + 
Sbjct: 54  LGIIHEVVNIRKDFENIVIKYFLEGYNSGKTPSPCIICDDEIKFKILFDIADKYNAEYVA 113

Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           T H T  +  E       +         S M   +  D    +  P     +++IR   L
Sbjct: 114 TGHYTSVEYSEVFSKYLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKDYSKQEIREIAL 173

Query: 183 QRNISWCE 190
           + ++   +
Sbjct: 174 KIDLEVHD 181


>gi|320095488|ref|ZP_08027159.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977584|gb|EFW09256.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 136

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 8   SVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +VR  +R L       ++VA+SGG+     L    + +   +   +    ++VDH LR  
Sbjct: 26  AVRGCLRGLGASPGDSVVVALSGGA---DSLALAAAAIDSGTRMGLDVRTVTVDHGLRPD 82

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
           +  E R V+++   L     VV    +    G    AR AR   +   A
Sbjct: 83  SGHEARAVAELARSLGAVPRVVGVDAAVGADGPEGNARAARMEALRREA 131


>gi|254437199|ref|ZP_05050693.1| hypothetical protein OA307_2069 [Octadecabacter antarcticus 307]
 gi|198252645|gb|EDY76959.1| hypothetical protein OA307_2069 [Octadecabacter antarcticus 307]
          Length = 156

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 11/122 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
             L+ +SGG DS  LL  LH +   R    +   A ++D   +         +      +
Sbjct: 38  KWLICLSGGKDSYTLLAVLHELQ-WRELLPVDLLACNLD---QGQPNFPATVLPKFLKDM 93

Query: 81  RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           R+ H +       +          + A     R   +   A+    + ++  H  DD LE
Sbjct: 94  RVPHRIEYQDTYSIVVDKIPMDRTMCALCSRFRRGNLCRIAREEGCSAVVLGHHRDDILE 153

Query: 134 TV 135
           T 
Sbjct: 154 TF 155


>gi|52841619|ref|YP_095418.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|81603374|sp|Q5ZVQ1|MNMA_LEGPH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|52628730|gb|AAU27471.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|307610092|emb|CBW99633.1| hypothetical protein LPW_14011 [Legionella pneumophila 130b]
          Length = 361

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 56/187 (29%), Gaps = 24/187 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRS---FGKIKFSAISVDHCLRETAKDEVRYVSD 75
            A ++V +SGG DS      L               +      DH     A  ++     
Sbjct: 2   KAKVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQD----DHNDYCPAAKDLADAQA 57

Query: 76  VCSRLRIAHSVVSW------KNSKPQTGLMAAAR----------EARYALISEHAKTINA 119
           VC++LRI    V++      +            R          E ++     HA T+ A
Sbjct: 58  VCNQLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALTLGA 117

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I T H   + +E       +    +      +       L+  I  P     +  IR 
Sbjct: 118 DYIATGHYAKNTIEGSIGYLFKAKDREKDQTYFLHAVEPEALSKTIF-PIGDFTKPQIRE 176

Query: 180 FLLQRNI 186
           F  Q  +
Sbjct: 177 FAKQLGL 183


>gi|148259910|ref|YP_001234037.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Acidiphilium cryptum JF-5]
 gi|326403136|ref|YP_004283217.1| GMP synthase [Acidiphilium multivorum AIU301]
 gi|146401591|gb|ABQ30118.1| GMP synthase (glutamine-hydrolyzing) [Acidiphilium cryptum JF-5]
 gi|325049997|dbj|BAJ80335.1| GMP synthase [Acidiphilium multivorum AIU301]
          Length = 520

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 21/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           +  E+ R  +R+ V    ++  +SGG DS      +H  + D      +   I VDH  L
Sbjct: 207 NFRETARDAIRAQVGTGRVICGLSGGVDSSVAAALIHEAIGD------QLVCIFVDHGLL 260

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R    DEV  V     R  I        +         + P+       R        E 
Sbjct: 261 RAGEADEV--VRVFRDRFNIRLVHRDASDLFFAALEGVTDPEVKRKTIGRLFIEVFEEEA 318

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                A  +     + D +E+V   S R      +        +   + + +  P     
Sbjct: 319 KNLGGADFLAQGTLYPDVIESV---SARGGPSAVIKSHHNVGGLPDRMRMKLVEPLRELF 375

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 376 KDEVRELGRELGLP 389


>gi|253578181|ref|ZP_04855453.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850499|gb|EES78457.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 282

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 68/197 (34%), Gaps = 42/197 (21%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + +E ++ +++ L     + VA S G DS  LL   H VL D++   I  +A       +
Sbjct: 3   NKLEHLKEYLKGL---GSVAVAFSSGVDSTFLLKVAHDVLGDKA---IAITA-------Q 49

Query: 64  ETA--KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAK 115
             +  K E+      C +  I H +   +       SK         ++  +  I + AK
Sbjct: 50  SCSFPKRELNEAKAFCEKEGIQHVICQSEELEIEGFSKNPPNRCYLCKKELFEKIGDIAK 109

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCR 173
                 I      DD              +   GL  + +       L +  P    +  
Sbjct: 110 KNGIEYIAEGSNMDDN------------GDYRPGLIAVKE-------LGVKSPLREAKLT 150

Query: 174 REDIRSFLLQRNISWCE 190
           + +IR +  +  +S  +
Sbjct: 151 KAEIREYSKELGLSTWD 167


>gi|319936290|ref|ZP_08010708.1| GMP synthase domain-containing protein [Coprobacillus sp. 29_1]
 gi|319808666|gb|EFW05210.1| GMP synthase domain-containing protein [Coprobacillus sp. 29_1]
          Length = 433

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    +L+A+SGG DS  +   L   +        +   + V+H L R+   ++V 
Sbjct: 132 IRNQVGDKKVLLALSGGVDSSVVAALLVKAIGK------QLYCVHVNHGLMRKGESEDVV 185

Query: 72  YVSDVCSRLRIAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V    ++L      V             + P+        E       E  K      +
Sbjct: 186 EVFQ--NQLDANLVYVDATERFLTKLENVADPEQKRKIIGAEFIRVFEEEARKLDGIEFL 243

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            K +        +  DL   +  P  +  ++++R+  +
Sbjct: 244 AQGTIYPDIIE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLFQLFKDEVRACGV 297

Query: 183 QRNISW 188
           +  + +
Sbjct: 298 ELGLPY 303


>gi|320334242|ref|YP_004170953.1| GMP synthase [Deinococcus maricopensis DSM 21211]
 gi|319755531|gb|ADV67288.1| GMP synthase (glutamine-hydrolyzing) [Deinococcus maricopensis DSM
           21211]
          Length = 508

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V    +L+A+SGG DS  L + L   + ++       +A+ +DH  LR     E  
Sbjct: 207 VRAQVGDGRVLLAISGGVDSSTLGLLLARAVGEK------LTAVFIDHGLLRLG---ERE 257

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V      L +    V  +          S P+       RE   A   E  +      +
Sbjct: 258 QVEAALRPLGVNLVTVDAREQFLGALAGVSDPEQKRKIIGREFIRAFEREAREYGPFDFL 317

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+             +        +  DL   +  PF    ++++R    
Sbjct: 318 AQGTLYPDVIES-----AGGEGAANIKSHHNVGGLPDDLAFKLVEPFRTLFKDEVREIAR 372

Query: 183 QRNIS 187
              + 
Sbjct: 373 LLGLP 377


>gi|217968149|ref|YP_002353655.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217337248|gb|ACK43041.1| PP-loop domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 268

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 64/202 (31%), Gaps = 41/202 (20%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               +E ++ F+R       ++VA SGG DS  LL      L D         A+++   
Sbjct: 1   MKEKLEELKNFLRD---CKKVVVAYSGGVDSTFLLKVAKDTLGD------NVLAVTL--- 48

Query: 62  LRE-TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISEH 113
           +     + E++    +   L + H ++                      ++  +  I E 
Sbjct: 49  ISPIFPEREIKEAKRIAEELGVRHIILKNDELLKHEEFIKNPPERCYICKKYNFQKIIEV 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           AK  N   ++     DD                   L       +    L I  P   L 
Sbjct: 109 AKENNIDCVLDGSNVDD-------------------LKDYRPGKMALKELGILSPLLELG 149

Query: 172 CRREDIRSFLLQRNISWCEDPS 193
             +E+IR    + N+   E PS
Sbjct: 150 FSKEEIRRLSREFNLPTSEKPS 171


>gi|325119368|emb|CBZ54921.1| PP-loop domain protein, related [Neospora caninum Liverpool]
          Length = 705

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 37/125 (29%)

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R       A+ I A ++ T H  DD  ET  M   R   ++               ++  
Sbjct: 324 RRQAFERGAQDIGADVLCTGHNADDGAETFLMNILRGDVQRLPVSGAPLTGSREGPSVMR 383

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQD 225
            +P L   + ++  +     + +            R  VR F   +  +    ++     
Sbjct: 384 VKPLLASFQREVVLYAHFNRLDYFATECTYSGAAYRGLVRNFFSSLQDNQQQQRILDLLH 443

Query: 226 LRVKV 230
               +
Sbjct: 444 AARNL 448



 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +R F         + V VSGG DS  LL  LH++ + R    +    ++VD  ++     
Sbjct: 138 IRRF-SLFHSGQKVAVCVSGGKDSAVLLHVLHTL-NVREHLGLSLHLLAVDEGIKGYRDQ 195

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN 91
            +  V        +   +VS+ N
Sbjct: 196 ALAAVKRNSHVYNLPLHIVSYDN 218


>gi|221129165|ref|XP_002162174.1| PREDICTED: similar to CG8078 CG8078-PA [Hydra magnipapillata]
          Length = 263

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R   +   A  + A  I+T H  DD  ETV M   R    +    + +   +  D  L  
Sbjct: 21  RRQALDRGAMLVKANKIVTGHNADDVAETVLMNILRGDIARLQRCTAIKTGV--DGALPR 78

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            +PF     ++I  +   + + +            R   R F++D++
Sbjct: 79  CKPFKYTYEKEIVMYAYFKKLDYFTTECIYSPNAYRGHARTFLKDLE 125


>gi|148358920|ref|YP_001250127.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella pneumophila str. Corby]
 gi|296106968|ref|YP_003618668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|205816878|sp|A5IBN1|MNMA_LEGPC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148280693|gb|ABQ54781.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella pneumophila str. Corby]
 gi|295648869|gb|ADG24716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 361

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 24/187 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRS---FGKIKFSAISVDHCLRETAKDEVRYVSD 75
            A ++V +SGG DS      L               +      DH     A  ++     
Sbjct: 2   KAKVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQD----DHNDYCPAAKDLADAQA 57

Query: 76  VCSRLRIAHSVVSW------KNSKPQTGLMAAAR----------EARYALISEHAKTINA 119
           VC++LRI    V++      +            R          E ++     HA  + A
Sbjct: 58  VCNQLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGA 117

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I T H   + +E       +    +      +       L+  I  P     +  IR 
Sbjct: 118 DYIATGHYAKNTIEGSIGYLFKAKDREKDQTYFLHAVEPEALSKTIF-PIGDFTKPQIRE 176

Query: 180 FLLQRNI 186
           F  Q  +
Sbjct: 177 FAKQLGL 183


>gi|302877062|ref|YP_003845695.1| ExsB family protein [Clostridium cellulovorans 743B]
 gi|307687753|ref|ZP_07630199.1| ExsB family protein [Clostridium cellulovorans 743B]
 gi|302579919|gb|ADL53931.1| ExsB family protein [Clostridium cellulovorans 743B]
          Length = 261

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 58/191 (30%), Gaps = 35/191 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +     V  L     +++A SGG DS  LL      L D         A+++   L    
Sbjct: 5   DKYNQLVEYLKSLGKVVIAFSGGVDSTFLLRVAKDALGD------NVKAVTI---LSPYI 55

Query: 67  KDEV-RYVSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAREARYALISEH---AKTINATL 121
                    ++   L + H  + +      +          + A+ S     AK      
Sbjct: 56  PRWEIAEAKELVKELGVKHEIIEAPIIEAIKYNPEDRCYLCKTAVFSMILSVAKEQGYDC 115

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRS 179
           ++    FDD                   +S     +     L +  P L  +  + +IR+
Sbjct: 116 VVDGTNFDD-------------------ISDYRPGLRALKELDVKSPLLVCKFTKAEIRA 156

Query: 180 FLLQRNISWCE 190
              + N++  +
Sbjct: 157 CSKELNLNTWD 167


>gi|256846579|ref|ZP_05552036.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
 gi|294784166|ref|ZP_06749467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
 gi|256718348|gb|EEU31904.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
 gi|294488236|gb|EFG35581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_27]
          Length = 343

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 25/188 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +KD +     VC++
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCNK 53

Query: 80  LRIAHSVVSWKNSKPQ---------------TGLMAAAR-EARYALISEHAKTINATLIM 123
           L I+H V++ +                             E ++ ++ + A    A  + 
Sbjct: 54  LGISHEVINIRKDFENIVIKYFLDGYSSGITPSPCVICDDEIKFKILFDIADKYKAEYVA 113

Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           T H T  +  E       +         S M   I  D    +  P     + +IR   L
Sbjct: 114 TGHYTSVEYSEIFSKYLLKSVHSIIKDQSYMLYRISPDKLERLIFPLKPYTKHEIREIAL 173

Query: 183 QRNISWCE 190
           +  +   +
Sbjct: 174 KIGLEVYD 181


>gi|94984705|ref|YP_604069.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Deinococcus geothermalis DSM 11300]
 gi|226738436|sp|Q1J0T4|GUAA_DEIGD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|94554986|gb|ABF44900.1| GMP synthase [Deinococcus geothermalis DSM 11300]
          Length = 505

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 59/185 (31%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V    +L+A+SGG DS  L + L   + DR       +A+ +DH  LR     E  
Sbjct: 204 VRRQVGAGRVLLAISGGVDSSTLGLLLARAIGDR------LTAVFIDHGLLRLG---ERE 254

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V      L +    V             S P+       RE   A   E  K      +
Sbjct: 255 QVEAALRPLGVNLVTVDASEEFLGALAGVSDPEQKRKIIGREFIRAFEREARKYGPFDFL 314

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+             +        +  DL   +  PF    ++++R    
Sbjct: 315 AQGTLYPDVIES-----AGGEGAANIKSHHNVGGLPEDLAFKLVEPFRTLFKDEVREIAR 369

Query: 183 QRNIS 187
              + 
Sbjct: 370 LLGLP 374


>gi|328950432|ref|YP_004367767.1| GMP synthase (glutamine-hydrolyzing) [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450756|gb|AEB11657.1| GMP synthase (glutamine-hydrolyzing) [Marinithermus hydrothermalis
           DSM 14884]
          Length = 504

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 63/192 (32%), Gaps = 25/192 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +ES+   VR  V    +L+AVSGG DS  L + L     D         A+ VDH  LR 
Sbjct: 197 LESLVREVRERVGEERVLLAVSGGVDSSTLALLLARAGVDH-------VAVFVDHGLLRL 249

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
             + EV +       L +    V             + P+       RE       +  +
Sbjct: 250 GERAEVEHA---LKPLGVNLVTVDASERFLAALEGVTDPEAKRKIIGREFVEVFKEKARE 306

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
               T +     + D +E+             +        +  DL   +  PF    ++
Sbjct: 307 LGPFTFLAQGTLYPDVIES-----AGGAGAANIKSHHNVGGLPKDLGFELLEPFRYLFKD 361

Query: 176 DIRSFLLQRNIS 187
           ++R   L   + 
Sbjct: 362 EVRELALLLGLP 373


>gi|218658572|ref|ZP_03514502.1| putative cell cycle protein MesJ/cytosine deaminase-related protein
           [Rhizobium etli IE4771]
          Length = 87

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 14/78 (17%)

Query: 359 YRKADVPSGIPPIIAQRALSSMPSKE--------------GGKPLLAPFSRFMTKFDLPV 404
             + +   G+P    +RA++S P+                   P  APF RF+T+FD   
Sbjct: 2   RNEGEWSRGLPKAAWKRAVASAPAFAVDGHPLSLQSVGSIHLTPYFAPFDRFLTRFDFIF 61

Query: 405 AYAFSISFGKVFIPRLPF 422
           A   S  F       LPF
Sbjct: 62  ADRLSAVFAMAPYAGLPF 79


>gi|297544225|ref|YP_003676527.1| PP-loop domain-containing protein [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842000|gb|ADH60516.1| PP-loop domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 273

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 38/181 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLR 81
           L+A SGG DS  L    + VL +R+       A++V        AK E++   ++  ++ 
Sbjct: 19  LIAFSGGVDSTFLAKVSYDVLGNRAL------AVTV---TSPIHAKSELKEAVELAKKIG 69

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALIS---EHAKTINATLIMTAHTFDDQLET 134
           I H VV + +     + +   +      ++ L S     A+      I+     DD    
Sbjct: 70  IPHLVVEFNDILEIEEFRKNPLNRCYICKFNLFSGFKAIAEEKGFKYILEGTNADD---- 125

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDP 192
                          +S           L I  P L    ++E+IR    +  +   + P
Sbjct: 126 ---------------VSDFRPGRRALKELGILSPLLECGIKKEEIRILSKEMGLPTWDKP 170

Query: 193 S 193
           S
Sbjct: 171 S 171


>gi|298376303|ref|ZP_06986259.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_19]
 gi|298267340|gb|EFI08997.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_19]
          Length = 435

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            V+  V    +L+A+SGG DS  +   L   + D      K   + V+H L R+   ++V
Sbjct: 133 LVKRQVGDKKVLLALSGGVDSSVVAALLLKAIGD------KLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V               P+        E       E  K      
Sbjct: 187 VEVFK--NQLNANLVYVDATDRFLNKLADVEDPEQKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LAQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|262383281|ref|ZP_06076417.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294179|gb|EEY82111.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 435

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            V+  V    +L+A+SGG DS  +   L   + D      K   + V+H L R+   ++V
Sbjct: 133 LVKRQVGDKKVLLALSGGVDSSVVAALLLKAIGD------KLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V               P+        E       E  K      
Sbjct: 187 VEVFK--NQLNANLVYVDATDRFLNKLADVEDPEQKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LAQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|256841570|ref|ZP_05547077.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
 gi|256737413|gb|EEU50740.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
          Length = 435

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            V+  V    +L+A+SGG DS  +   L   + D      K   + V+H L R+   ++V
Sbjct: 133 LVKRQVGDKKVLLALSGGVDSSVVAALLLKAIGD------KLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V               P+        E       E  K      
Sbjct: 187 VEVFK--NQLNANLVYVDATDRFLNKLADVEDPEQKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LAQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|150008446|ref|YP_001303189.1| putative GMP synthase [Parabacteroides distasonis ATCC 8503]
 gi|255014181|ref|ZP_05286307.1| putative GMP synthase [Bacteroides sp. 2_1_7]
 gi|301309336|ref|ZP_07215278.1| GMP synthase, C- domain protein [Bacteroides sp. 20_3]
 gi|149936870|gb|ABR43567.1| putative GMP synthase [Parabacteroides distasonis ATCC 8503]
 gi|300832425|gb|EFK63053.1| GMP synthase, C- domain protein [Bacteroides sp. 20_3]
          Length = 435

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            V+  V    +L+A+SGG DS  +   L   + D      K   + V+H L R+   ++V
Sbjct: 133 LVKRQVGDKKVLLALSGGVDSSVVAALLLKAIGD------KLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V               P+        E       E  K      
Sbjct: 187 VEVFK--NQLNANLVYVDATDRFLNKLADVEDPEQKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LAQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|260942485|ref|XP_002615541.1| hypothetical protein CLUG_04423 [Clavispora lusitaniae ATCC 42720]
 gi|238850831|gb|EEQ40295.1| hypothetical protein CLUG_04423 [Clavispora lusitaniae ATCC 42720]
          Length = 268

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 1/107 (0%)

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            R   +   A  +    ++T H  DD  ETV M   R    +      +  T      + 
Sbjct: 35  LRRQALDRGAAKLGIQHVVTGHNADDMAETVLMNLLRGDTARLESSCALL-THSEGSPVR 93

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDI 211
            S+PF    +++I  +   + + +            R   R  ++ +
Sbjct: 94  RSKPFKYMYQKEIVLYAHYKRLDYFSTECTYAPEAFRGTARELLKGL 140


>gi|261349498|ref|ZP_05974915.1| PP-loop family protein [Methanobrevibacter smithii DSM 2374]
 gi|288861862|gb|EFC94160.1| PP-loop family protein [Methanobrevibacter smithii DSM 2374]
          Length = 336

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 50/198 (25%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H-- 60
             IE V   +++      I +A SGG+DS  L      V            AI++D H  
Sbjct: 5   EKIEKVENTIKN----RKIAIAFSGGADSTLLAYLASKVSDKP-------IAITIDNHIF 53

Query: 61  --CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISE 112
                      +++         I H V+     + +  L          R+  Y  I +
Sbjct: 54  PTGF-------IKHCKKTAKEFGIKHKVIDLNFYEHENLLSNKSDRCFVCRDLMYGNIKK 106

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR- 171
           +A       ++  +   D +        R               I Y  N+    PF+  
Sbjct: 107 YATDNGYESVLDGNNISDLV------LDRPGIL-----------ITYKNNVE--SPFIHA 147

Query: 172 -CRREDIRSFLLQRNISW 188
               ++I  +L + NI +
Sbjct: 148 KLTSKEIHEYLNKHNIPF 165


>gi|221195451|ref|ZP_03568506.1| GMP synthase [glutamine-hydrolyzing] [Atopobium rimae ATCC 49626]
 gi|221184638|gb|EEE17030.1| GMP synthase [glutamine-hydrolyzing] [Atopobium rimae ATCC 49626]
          Length = 532

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 65/197 (32%), Gaps = 26/197 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +++A+SGG DS  +   +H  + D      + + + V+H  L
Sbjct: 207 NIIEQKVAEIRQKVGNGRVILALSGGVDSSVVAALVHRAIGD------QLTCVFVNHGML 260

Query: 63  RETAKDEVRYVSDVCS-RLRIAHSVVSWKNSKPQ-----TGLMAAAR----EARYALISE 112
           R+    E   V  V   +  +    V  +    +     T      R    E       E
Sbjct: 261 RKG---EPEMVEQVFRTQFNVPLVHVHAEERYAKLLAGVTEPEQKRRLIGTEFWKVFFEE 317

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFL 170
             K      +     + D +E+      R    K   +    + I +   +   +  P  
Sbjct: 318 AQKLDGVQFLAQGTIYPDIIES----GARKTGGKASTIKSHHNLIPFPEGVHFDLIEPLD 373

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   +   + 
Sbjct: 374 HFFKDEVRELGVSLGLP 390


>gi|289577952|ref|YP_003476579.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527665|gb|ADD02017.1| PP-loop domain protein [Thermoanaerobacter italicus Ab9]
          Length = 273

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 64/181 (35%), Gaps = 38/181 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLR 81
           L+A SGG DS  L    + VL +R+       A++V        AK E++   ++  ++ 
Sbjct: 19  LIAFSGGVDSTFLAKVSYDVLGNRAL------AVTV---TSPIHAKSELKEAVELAKKIG 69

Query: 82  IAHSVVSWKN----SKPQTGLMAAAREARYALISE---HAKTINATLIMTAHTFDDQLET 134
           I H VV + +     + +   +      ++ L S     A+      I+     DD    
Sbjct: 70  IPHLVVEFNDILEIEEFRKNPLNRCYICKFNLFSRFKAIAEEKGFKYILEGTNADD---- 125

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDP 192
                          +S           L I  P L    ++E+IR    +  +   + P
Sbjct: 126 ---------------VSDFRPGRRALKELGILSPLLECGIKKEEIRILSKEMGLPTWDKP 170

Query: 193 S 193
           S
Sbjct: 171 S 171


>gi|289807199|ref|ZP_06537828.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 164

 Score = 63.8 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 52/164 (31%), Gaps = 9/164 (5%)

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             R  ++   A  + AT I   H  DD L+T+++        KGM    M D    D   
Sbjct: 2   RLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKH 57

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNT---DDRFERVRVRRFVRDIDLHALYLKM 220
            + RP   CR +DI  F   +       P N        +R  +   +RD D        
Sbjct: 58  IVIRPLAYCREKDIVRFAEAKAFPII--PCNLCGSQPNLQRQVIADMLRDWDKRYPGRIE 115

Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLL 264
             F  ++  V + +                 I    L  D   +
Sbjct: 116 TMFSAMQNVVPSHLCDTNLFDFKGITHGSEVIDGGDLAFDREEI 159


>gi|291518594|emb|CBK73815.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 515

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 20/112 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS  L   L   +        + + + VDH  LR+   DEV 
Sbjct: 210 IRQRVGDGKVLLALSGGVDSSVLAALLAKAIGK------QLTCVFVDHGLLRKNEGDEVE 263

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            V        I    V+             A E  YA ++   +      I+
Sbjct: 264 SVFGEAGSFDINFVRVN-------------AAERYYAKLAGVTEPEQKRKII 302


>gi|217034343|ref|ZP_03439759.1| hypothetical protein HP9810_491g36 [Helicobacter pylori 98-10]
 gi|216943228|gb|EEC22695.1| hypothetical protein HP9810_491g36 [Helicobacter pylori 98-10]
          Length = 508

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 28/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            V  +   L+I  + +  K                R+       E  +          H 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFEKE-----AKKHH 308

Query: 128 FDDQLE-----TVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDIR 178
              ++E     T+Y       + KG             +   ++  +  P     ++++R
Sbjct: 309 LKGKIEFLSQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFKLIEPLRELFKDEVR 368

Query: 179 SFLLQRNIS 187
               +  IS
Sbjct: 369 LLGKELGIS 377


>gi|222445963|ref|ZP_03608478.1| hypothetical protein METSMIALI_01611 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435528|gb|EEE42693.1| hypothetical protein METSMIALI_01611 [Methanobrevibacter smithii
           DSM 2375]
          Length = 336

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 62/198 (31%), Gaps = 50/198 (25%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H-- 60
             IE V   +++      I +A SGG+DS  L      V            AI++D H  
Sbjct: 5   EKIEKVENTIKN----RKIAIAFSGGADSTLLTYLASKVSDKP-------IAITIDNHIF 53

Query: 61  --CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISE 112
                      +++         I H V+     + +  L          R+  Y  I +
Sbjct: 54  PTGF-------IKHCKKTAKEFGIKHKVIDLNFYEHENLLSNKSDRCFVCRDLMYGNIKK 106

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR- 171
           +A       ++  +   D +        R               I Y  N  I  PF+  
Sbjct: 107 YATDNGYESVLDGNNISDLV------LDRPGIL-----------ITYKNN--IESPFIHA 147

Query: 172 -CRREDIRSFLLQRNISW 188
               ++I  +L + NI +
Sbjct: 148 KLTSKEIHEYLNKHNIPF 165


>gi|150020898|ref|YP_001306252.1| PP-loop domain-containing protein [Thermosipho melanesiensis BI429]
 gi|149793419|gb|ABR30867.1| PP-loop domain protein [Thermosipho melanesiensis BI429]
          Length = 287

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 64/188 (34%), Gaps = 13/188 (6%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           +F  +  +    ILV++SGG DS+ +   L  +        ++     +D  +   ++  
Sbjct: 32  KFLDKFKIKNKKILVSISGGKDSVVVSYVLSKLKEK---YNLQIEYFFIDLGIPIFSEKS 88

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTINATLIM 123
                +V  +L     + + +          +    +     R  +++++A   N   ++
Sbjct: 89  KEISLEVTKKLNNELIIYNLEKEDGFTIMDIKYKPCSYCGMIRRYILNKYAYENNFDYVV 148

Query: 124 TAHTFDDQLETVYM--RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
             H  DD  E  ++          +      +  TI     +   +P      E+I  + 
Sbjct: 149 LGHNLDD--EVFFLFNNMFNKNISQLQRTGPLTLTIKEKKLIGRIKPLYFLTEEEILLYA 206

Query: 182 LQRNISWC 189
              ++ + 
Sbjct: 207 KLNSLPYI 214


>gi|34762114|ref|ZP_00143122.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27888191|gb|EAA25249.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 343

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 68/193 (35%), Gaps = 35/193 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +KD +     VC +
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCDK 53

Query: 80  LRIAHSVVSWKNSKP-----------QTGLMAAAR-----EARYALISEHAKTINATLIM 123
           L I H VV+ +               +TG+  +       E ++ ++ + A    A  + 
Sbjct: 54  LGIIHKVVNIRKDFENIVIKYFLDGYKTGITPSPCIICDDEIKFKILFDIADKYKAEYVA 113

Query: 124 TAHTFDDQLE------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T H     +E         ++S     +     S M   +  D    +  P     +++I
Sbjct: 114 TGHYTS--VEYSKIFSKYLLKSVHSIIKDQ---SYMLYRLSPDKLERLIFPLKSYSKQEI 168

Query: 178 RSFLLQRNISWCE 190
           R   L+  +   +
Sbjct: 169 REIALKIGLEVYD 181


>gi|317177792|dbj|BAJ55581.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori F16]
          Length = 508

 Score = 63.4 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEEIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREAR----YALISEHAKTIN----A 119
            V  +   L+I  + +  K                R+        +  + AK  +     
Sbjct: 254 RVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFEKEAKKHHLKGKI 313

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ + + +     +  P     ++++R 
Sbjct: 314 EFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFK----LIEPLRELFKDEVRL 369

Query: 180 FLLQRNIS 187
              +  IS
Sbjct: 370 LGKELGIS 377


>gi|308184782|ref|YP_003928915.1| GMP synthase [Helicobacter pylori SJM180]
 gi|308060702|gb|ADO02598.1| GMP synthase [Helicobacter pylori SJM180]
          Length = 508

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREAR----YALISEHAKTIN----A 119
            V  +   L+I  + +  K                R+        +  + AK  +     
Sbjct: 254 KVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFEKEAKKHHLKGKI 313

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ + + +     +  P     ++++R 
Sbjct: 314 EFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFK----LIEPLRELFKDEVRL 369

Query: 180 FLLQRNIS 187
              +  IS
Sbjct: 370 LGKELGIS 377


>gi|297380221|gb|ADI35108.1| GMP synthase, C-terminal domain-containing protein [Helicobacter
           pylori v225d]
          Length = 508

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREAR----YALISEHAKTIN----A 119
            V  +   L+I  + +  K                R+        +  + AK  +     
Sbjct: 254 KVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFEKEAKKHHLKGKI 313

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ + + +     +  P     ++++R 
Sbjct: 314 EFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFK----LIEPLRELFKDEVRL 369

Query: 180 FLLQRNIS 187
              +  IS
Sbjct: 370 LGKELGIS 377


>gi|323137322|ref|ZP_08072400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylocystis sp. ATCC 49242]
 gi|322397309|gb|EFX99832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylocystis sp. ATCC 49242]
          Length = 412

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 67/215 (31%), Gaps = 46/215 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R+    A  ++
Sbjct: 17  PGDTRVVVAMSGGVDSSVVAALLKEQGYDVVGVTLQLY----DHGEATHRKGACCAGQDI 72

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           +    V +RL I H V+ ++    +  +   A                    +A + E A
Sbjct: 73  QDARAVAARLGIPHFVLDYERRFREKVIDEFAASYASGETPVPCVACNQFIKFADLFETA 132

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLW 164
           K + A ++ T H              RD  E G  L    D              +    
Sbjct: 133 KDLGAHVLATGHYIS----------SRDDGEGGRALYRAKDASRDQSYFLFATTREQLRM 182

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +  P     + ++R       +   + P + D  F
Sbjct: 183 LRFPLGDYTKAEVREMARNYGLEVADKPDSQDICF 217


>gi|134298029|ref|YP_001111525.1| PP-loop domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134050729|gb|ABO48700.1| PP-loop domain protein [Desulfotomaculum reducens MI-1]
          Length = 270

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 59/191 (30%), Gaps = 38/191 (19%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEV 70
           +R L+     +LVA SGG+DS      L   + +     +  +AI        T+ K EV
Sbjct: 10  LRQLLGECGKVLVAYSGGTDS---AFLLAVAVQELGDNVLAVTAI------SPTSTKAEV 60

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------RYALISEHAKTINATLIMT 124
                +   L + H ++  K    +  +   A         RY  + E AK      ++ 
Sbjct: 61  AEAQQLAKELGVHHRIIHSKEMDLRDFVGNTAERCYICKYSRYFDLQEIAKQKKIPWVLD 120

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLL 182
               DD                   L            L +  P   +   + +IR    
Sbjct: 121 GSNMDD-------------------LDDYRPGNRAIKELGLRSPMQEVTLTKSEIRQLSR 161

Query: 183 QRNISWCEDPS 193
           Q  +     PS
Sbjct: 162 QMGLPTWNKPS 172


>gi|317012818|gb|ADU83426.1| GMP synthase [Helicobacter pylori Lithuania75]
          Length = 508

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREAR----YALISEHAKTIN----A 119
            V  +   L+I  + +  K                R+        +  + AK  +     
Sbjct: 254 RVQAMFKDLQIPLNTIDAKGIFLSKLKGVSEPEWKRKIIGETFIEVFEKEAKKHHLKGKI 313

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ + + +     +  P     ++++R 
Sbjct: 314 EFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFK----LIEPLRELFKDEVRL 369

Query: 180 FLLQRNIS 187
              +  +S
Sbjct: 370 LGKELGVS 377


>gi|302389695|ref|YP_003825516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200323|gb|ADL07893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
          Length = 364

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 57/213 (26%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSD------------------RSFGKIKFSAISV 58
           +    ++VA+SGG DS      L     +                  R  G     A+  
Sbjct: 3   LNKNRVVVAMSGGVDSSTCAYLLKKQGYEVIGITMQIWQDPSEDYTYREGGCCSIGAVY- 61

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAA 102
                     + R V     +L I + V+++K    Q  +                 A  
Sbjct: 62  ----------DARKV---AEKLGIPYYVLNFKEEFNQKVIEYFIEEYLRGRTPNPCIACN 108

Query: 103 REARYALISEHAKTINATLIMTAHTFD---DQLET--VYMRSQRDYAEKGMGLSGMCDTI 157
           R  ++  + + A  ++A  + T H      D      +  ++     ++   L  +    
Sbjct: 109 RYIKFEALLQKAMEVDAYYLATGHYARIEYDSASGRYLLKKAVDKSKDQSYALYNLTQGQ 168

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           L      +  P     +  IR    +  +   E
Sbjct: 169 LE----HLIMPLGYFTKSQIRDIAKEAGLPVAE 197


>gi|240272838|gb|EER36367.1| VEG136 protein [Ajellomyces capsulatus H143]
          Length = 308

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 1/124 (0%)

Query: 89  WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
                   G        R   +   A  +    ++T H  DD  ET+ M   R    + +
Sbjct: 19  VVAEIGTKGNCTYCGVFRRQALDRGAAKLGIGHVVTGHNADDVAETIVMNLLRGDLPR-L 77

Query: 149 GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFV 208
             S    T     ++  S+P      ++I  +   + + +            R   R  +
Sbjct: 78  ARSTNIVTESSASDIKRSKPLKYAYEKEIVLYAHYKKLCYFSTECIYSPEAFRGSARTLI 137

Query: 209 RDID 212
           +D++
Sbjct: 138 KDLE 141


>gi|329942917|ref|ZP_08291696.1| guaA GMP synthetase [Chlamydophila psittaci Cal10]
 gi|332287509|ref|YP_004422410.1| GMP synthase [Chlamydophila psittaci 6BC]
 gi|313848086|emb|CBY17085.1| GMP synthase [Chlamydophila psittaci RD1]
 gi|325506895|gb|ADZ18533.1| GMP synthase [Chlamydophila psittaci 6BC]
 gi|328815177|gb|EGF85166.1| guaA GMP synthetase [Chlamydophila psittaci Cal10]
 gi|328914757|gb|AEB55590.1| GMP synthase [Chlamydophila psittaci 6BC]
          Length = 512

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSR 79
            +L+A+SGG DS  L + LH  L DR       S + VD   LR+    E + V  + + 
Sbjct: 219 RVLLALSGGVDSSVLAVLLHRALGDR------LSCVFVDTGLLRKG---EAQEVKQLFAS 269

Query: 80  LRIAHSVVS-----WKNSKPQTGLMAAAREARYAL---ISEHAKTINATLIMTAHTFDDQ 131
           L +   V       +++           +    A        ++ +N   +     + D 
Sbjct: 270 LGLEVIVEDASEKFFRDLSGVYDPELKRKVIGAAFVDVFDNISRDLNVQWLAQGTIYSDV 329

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +E+    ++   A + +        +   LNL +  P     +++IR+      + 
Sbjct: 330 IES----AKSCDATQVIKSHHNVGGLPEKLNLKLLEPLRFLFKDEIRALGKTLGLP 381


>gi|302388969|ref|YP_003824790.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302199597|gb|ADL07167.1| PP-loop domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 278

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 41/201 (20%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +  +E ++  +++L     ++VA SGG DS  LL     VL     GK    A++     
Sbjct: 4   MEKLERLKSCIKNL---GRVVVAFSGGVDSTFLLKVCLDVL-----GKENVLAVTA---- 51

Query: 63  RETA--KDEVRYVSDVCSRLRIAHSVV---SWKNSKPQTGLMAAAREARYALISE---HA 114
           R +     E+     +  +    H ++                     +  L  +    A
Sbjct: 52  RSSTYPARELEEARKLAEKFGANHEIIVSEELDIPGFSENPPERCYHCKKELFGKLVAIA 111

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRC 172
           +      ++     DD                G    GM         L +  P      
Sbjct: 112 RERGFNFVLDGSNMDD---------------TGDFRPGMRAK----DELGVLSPLKEAGL 152

Query: 173 RREDIRSFLLQRNISWCEDPS 193
            + DIR+   +  +     PS
Sbjct: 153 TKADIRALSREMGLPTWNKPS 173


>gi|293369968|ref|ZP_06616535.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634886|gb|EFF53408.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 435

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 64/187 (34%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            ++  V    +L+A+SGG DS  +   L   + +          + V+H L R+   ++V
Sbjct: 133 LIKRQVGDKKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRL--RIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATL 121
             V    ++L   + +  V+ +      G+            E       E  K      
Sbjct: 187 AEV--FSNQLKANLVYVDVTDRFLNKLAGVEDPEQKRKIIGGEFIRVFEEEARKLNGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFQLVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 299 LELGLPY 305


>gi|269123624|ref|YP_003306201.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptobacillus moniliformis DSM 12112]
 gi|268314950|gb|ACZ01324.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Streptobacillus moniliformis DSM 12112]
          Length = 359

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 39/196 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD-------RSFGKIKFSAISVDHCLRETAKDEVR 71
              +++ +SGG DS    I L     +           K +             +  +  
Sbjct: 2   KKRVVLGMSGGVDSSVAAILLKEAGYEVIGVFMKNWEEKDENGVCM--------SDIDYE 53

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAK 115
            V  V  +L I +  V++             +  R AR             +    ++A 
Sbjct: 54  DVISVAEQLEIPYYSVNFVKEYWDRVFEYFLSEYRLARTPNPDVMCNKEIKFKAFLDYAN 113

Query: 116 TINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            + A  I T H    T +++ E V +R   +  ++   L G+    L      +  P   
Sbjct: 114 KLGADYIATGHYARLTTNEKGEKVLLRGVDNNKDQSYFLCGLNQKQLEK----VLFPIGE 169

Query: 172 CRREDIRSFLLQRNIS 187
             + +IR    + N+ 
Sbjct: 170 YEKTEIRKIAEKYNLK 185


>gi|15612037|ref|NP_223689.1| GMP synthase [Helicobacter pylori J99]
 gi|12230201|sp|Q9ZKG4|GUAA_HELPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|4155553|gb|AAD06548.1| GMP SYNTHETASE [Helicobacter pylori J99]
          Length = 508

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E VR  ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+ 
Sbjct: 199 EIVR--LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN 250

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN 91
              E   V  +   L+I  + +  K 
Sbjct: 251 ---EKEKVQAMFKDLQIPLNTIDAKE 273


>gi|298735957|ref|YP_003728482.1| GMP synthase [Helicobacter pylori B8]
 gi|298355146|emb|CBI66018.1| GMP synthase (glutamine-hydrolysing) [Helicobacter pylori B8]
          Length = 508

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKG 273


>gi|217032288|ref|ZP_03437785.1| hypothetical protein HPB128_142g36 [Helicobacter pylori B128]
 gi|216946054|gb|EEC24667.1| hypothetical protein HPB128_142g36 [Helicobacter pylori B128]
          Length = 433

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 156 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 206

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 207 RVQAMFKDLQIPLNTIDAKG 226


>gi|208434941|ref|YP_002266607.1| GMP synthase [Helicobacter pylori G27]
 gi|226739631|sp|B5Z842|GUAA_HELPG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|208432870|gb|ACI27741.1| GMP synthase [Helicobacter pylori G27]
          Length = 508

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKG 273


>gi|269215719|ref|ZP_06159573.1| GMP synthase [Slackia exigua ATCC 700122]
 gi|269131206|gb|EEZ62281.1| GMP synthase [Slackia exigua ATCC 700122]
          Length = 530

 Score = 63.0 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 24/183 (13%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSD 75
           V    +++A+SGG DS  +   L   +        + + + ++H  LR+   +EV  V  
Sbjct: 218 VGDDRVILALSGGVDSSVVGALLSRAIGK------QLTCVFINHGLLRKNEPEEVERV-- 269

Query: 76  VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              +  +    V  +           +P+        +      +   KT     +    
Sbjct: 270 FTEQFDVDFVHVHAEERYAELLDGVVEPEQKRRIIGTQFWKEFFTVAQKTGGVKYLAQGT 329

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRSFLLQR 184
            + D +E+      R    K   +    + I +   +   +  P     +++IR+     
Sbjct: 330 IYPDIIES----GARKTGGKASTIKSHHNLIPFPEGVHFDLIEPLDHFFKDEIRALGTAL 385

Query: 185 NIS 187
            + 
Sbjct: 386 GLP 388


>gi|109947068|ref|YP_664296.1| GMP synthase [Helicobacter acinonychis str. Sheeba]
 gi|123173520|sp|Q17YH9|GUAA_HELAH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|109714289|emb|CAJ99297.1| GMP synthase [Helicobacter acinonychis str. Sheeba]
          Length = 508

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKISDARVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 KVQAMFKDLQIPLNTIDAKE 273


>gi|332673843|gb|AEE70660.1| GMP synthase [Helicobacter pylori 83]
          Length = 508

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKE 273


>gi|317180159|dbj|BAJ57945.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori F32]
          Length = 508

 Score = 63.0 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKE 273


>gi|261839778|gb|ACX99543.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori 52]
          Length = 508

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH V+ D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRVIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 KVQAMFKDLQIPLNTIDAKE 273


>gi|326791915|ref|YP_004309736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium lentocellum DSM 5427]
 gi|326542679|gb|ADZ84538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium lentocellum DSM 5427]
          Length = 360

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 55/206 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--------- 69
              ++V +SGG DS      L     +     ++          +E A ++         
Sbjct: 6   KKKVVVGMSGGVDSSVTAYLLKEQGYEVIGMTMQI--------WQEGAPEDSDGGCCGLS 57

Query: 70  -VRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISE 112
            V     VC +L I H VV++++   +                    A  R  ++  + +
Sbjct: 58  AVDDARRVCQKLDIPHYVVNFRSDFKKHVIDYFLDEYQNARTPNPCIACNRYVKWESMLQ 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI------- 165
            A  I A  I T H           R  RD    G        T+  D    +       
Sbjct: 118 KALQIGADYIATGHYA---------RVIRDE-VTGRYSLKQSKTLAKDQTYALYNLTQHQ 167

Query: 166 ----SRPFLRCRREDIRSFLLQRNIS 187
                 P     ++++R+   +  ++
Sbjct: 168 LAHTLMPLGDYTKDEVRAIAKEIGLA 193


>gi|125974345|ref|YP_001038255.1| hypothetical protein Cthe_1841 [Clostridium thermocellum ATCC
           27405]
 gi|256005576|ref|ZP_05430536.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
 gi|125714570|gb|ABN53062.1| conserved hypothetical protein [Clostridium thermocellum ATCC
           27405]
 gi|255990484|gb|EEU00606.1| PP-loop domain protein [Clostridium thermocellum DSM 2360]
 gi|316941503|gb|ADU75537.1| PP-loop domain protein [Clostridium thermocellum DSM 1313]
          Length = 269

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 68/199 (34%), Gaps = 42/199 (21%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +E ++  ++ +     ++VA SGG DS  LL   H VL +      K  A++     R 
Sbjct: 6   KMEKLKARLKEM---ESVIVAFSGGVDSTFLLKVAHDVLGN------KVLAVTA----RS 52

Query: 65  TA--KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKT 116
            A  + E++   +  S   I    +  +    +             ++  ++ I   A+ 
Sbjct: 53  AAFPERELKDAENFASNYGIPFKTIISEELNVEGFAENPPNRCYLCKKELFSKIKRIAED 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRR 174
                ++    +DD              +   GL  + +       L I  P   +   +
Sbjct: 113 EGYKFVVEGSNYDDL------------GDYRPGLKAIEE-------LEIVSPLREVGLTK 153

Query: 175 EDIRSFLLQRNISWCEDPS 193
            +IR    +  +   + PS
Sbjct: 154 AEIRKLSKEMGLKTWDKPS 172


>gi|295115159|emb|CBL36006.1| Predicted ATPase of the PP-loop superfamily implicated in cell
          cycle control [butyrate-producing bacterium SM4/1]
          Length = 92

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              I V +SGG DS+ LL AL  +            AI+VD         E     + C
Sbjct: 4  SGDKIAVGLSGGKDSLALLYALKHIQKFYP-KSFDLCAITVDLGF-GNFNLEAA--QEFC 59

Query: 78 SRLRIAHSVVSWKNSK 93
          S L + +++V  + S+
Sbjct: 60 SSLCVPYTIVPIEISQ 75


>gi|289548105|ref|YP_003473093.1| GMP synthase, large subunit [Thermocrinis albus DSM 14484]
 gi|289181722|gb|ADC88966.1| GMP synthase, large subunit [Thermocrinis albus DSM 14484]
          Length = 508

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 66/184 (35%), Gaps = 23/184 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +RS V    ++ A+SGG DS    +  H  + D          + VDH  LR+    E+ 
Sbjct: 208 IRSQVKGRKVISALSGGVDSTVAAVLTHRAVGDL------LECVFVDHGLLRKG---ELE 258

Query: 72  YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYAL---ISEHAKTINATLIM 123
            V++   ++ +   VVS      +  +         R   +       + A+ I A L++
Sbjct: 259 QVTEAFRKMNLPFRVVSAGKLFLERLRGVEDPEEKRRIIGHTFIEVFEKEAEKIGAQLLL 318

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+           + +        +   +NL +  P     ++++R     
Sbjct: 319 QGTLYPDVVES-----AGIAGSQVIKSHHNVGGLPEKMNLELLEPLRDMFKDEVRQLGKL 373

Query: 184 RNIS 187
             I 
Sbjct: 374 LGIP 377


>gi|54294275|ref|YP_126690.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens]
 gi|81601380|sp|Q5WWV9|MNMA_LEGPL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|53754107|emb|CAH15580.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens]
          Length = 361

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 24/187 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRS---FGKIKFSAISVDHCLRETAKDEVRYVSD 75
            A ++V +SGG DS      L               +      DH     A  ++     
Sbjct: 2   KAKVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQD----DHNDYCPAAKDLADAQA 57

Query: 76  VCSRLRIAHSVVSW------KNSKPQTGLMAAAR----------EARYALISEHAKTINA 119
           VC++LRI    V++      +            R          E ++     +A T+ A
Sbjct: 58  VCNQLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALTLGA 117

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I T H   + +E       +    +      +       L+  I  P     +  IR 
Sbjct: 118 DYIATGHYAKNTIEGSIGYLFKAKDREKDQTYFLHAVEPEALSKTIF-PIGDFTKPQIRE 176

Query: 180 FLLQRNI 186
           F  Q  +
Sbjct: 177 FAKQLGL 183


>gi|260174366|ref|ZP_05760778.1| putative GMP synthase (glutamine-hydrolyzing) [Bacteroides sp. D2]
 gi|315922634|ref|ZP_07918874.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696509|gb|EFS33344.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 434

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 21/185 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            ++  V    +L+A+SGG DS  +   L   + +          + V+H L R+   ++V
Sbjct: 133 LIKRQVGDKKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATLIM 123
             V +      + +  V+ +      G+            E       E  K      + 
Sbjct: 187 VEVFNQLKA-NLVYVDVTDRFLNKLAGVEDPEQKRKIIGGEFIRVFEEEARKLNGIDFLG 245

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E            K +        +  DL   +  P  +  ++++R+  L+
Sbjct: 246 QGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFQLVEPLRQLFKDEVRACGLE 299

Query: 184 RNISW 188
             + +
Sbjct: 300 LGLPY 304


>gi|54297299|ref|YP_123668.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila str.
           Paris]
 gi|81601865|sp|Q5X5H6|MNMA_LEGPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|53751084|emb|CAH12495.1| hypothetical protein lpp1344 [Legionella pneumophila str. Paris]
          Length = 361

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 24/187 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRS---FGKIKFSAISVDHCLRETAKDEVRYVSD 75
            A ++V +SGG DS      L               +      DH     A  ++     
Sbjct: 2   KAKVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQD----DHNDFCPAAKDLADAQA 57

Query: 76  VCSRLRIAHSVVSW------KNSKPQTGLMAAAR----------EARYALISEHAKTINA 119
           VC++LRI    V++      +            R          E ++     HA  + A
Sbjct: 58  VCNQLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGA 117

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I T H   + +E       +    +      +       L+  I  P     +  IR 
Sbjct: 118 DYIATGHYAKNTIEGSIGYLFKAKDREKDQTYFLHAVEPEALSKTIF-PIGDFTKPQIRE 176

Query: 180 FLLQRNI 186
           F  Q  +
Sbjct: 177 FAKQLGL 183


>gi|160941480|ref|ZP_02088814.1| hypothetical protein CLOBOL_06370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435564|gb|EDP13331.1| hypothetical protein CLOBOL_06370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 288

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 32/179 (17%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           +    I +A SGG DS    + L +     +    K  A++ D  L  +   E+     V
Sbjct: 29  LAKEDICLAFSGGVDSS---LLLKTAADAAAHTGRKVYAVTFDSRLHPSCDLEIA--RRV 83

Query: 77  CSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
              L   H V++    + ++            +   ++ ++E A+      I+     DD
Sbjct: 84  AGELGGIHEVITVDELEQESIKNNPVNRCYLCKRHLFSRLAELAEARGIRYILDGTNEDD 143

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
                 M   R       G+  + +       L I  P   L   +  +++   +  IS
Sbjct: 144 ------MHVYRP------GIRALKE-------LGIISPLAELHITKAQVKALASEYGIS 183


>gi|298387971|ref|ZP_06997519.1| GMP synthase, C- domain protein [Bacteroides sp. 1_1_14]
 gi|298259237|gb|EFI02113.1| GMP synthase, C- domain protein [Bacteroides sp. 1_1_14]
          Length = 435

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   + +          + V+H L R+   ++V
Sbjct: 133 LIRRQVGDKKVLLALSGGVDSSVVAALLLKAIGE------NLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRL--RIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATL 121
             V    ++L   + +  V+ +      G+            E       E  K      
Sbjct: 187 --VEVFSNQLKANLVYVDVTDRFLDKLAGVEDPEQKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFQLVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 299 LELGLPY 305


>gi|29347829|ref|NP_811332.1| putative GMP synthase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253572215|ref|ZP_04849619.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|44887958|sp|Q8A525|GUAA2_BACTN RecName: Full=Putative GMP synthase [glutamine-hydrolyzing] 2;
           AltName: Full=GMP synthetase 2; AltName: Full=Glutamine
           amidotransferase 2
 gi|29339731|gb|AAO77526.1| putative GMP synthase, glutamine-hydrolyzing [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838395|gb|EES66482.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 435

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   + +          + V+H L R+   ++V
Sbjct: 133 LIRRQVGDKKVLLALSGGVDSSVVAALLLKAIGE------NLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRL--RIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATL 121
             V    ++L   + +  V+ +      G+            E       E  K      
Sbjct: 187 --VEVFSNQLKANLVYVDVTDRFLDKLAGVEDPEQKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFQLVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 299 LELGLPY 305


>gi|317014429|gb|ADU81865.1| GMP synthase [Helicobacter pylori Gambia94/24]
          Length = 508

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEQIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 KVQAMFKDLQIPLNTIDAKE 273


>gi|315586935|gb|ADU41316.1| GMP synthase (glutamine-hydrolyzing) [Helicobacter pylori 35A]
          Length = 508

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEEIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKE 273


>gi|329770388|ref|ZP_08261770.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325]
 gi|328836511|gb|EGF86171.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325]
          Length = 370

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 72/197 (36%), Gaps = 36/197 (18%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDE 69
           +     ++V +SGG DS      L     D      +++ +     + V       A+ +
Sbjct: 1   MSNGKKVVVGMSGGVDSSVTAYLLKEQGYDVIGVFMKNWEEKDDKGVCV-------AEKD 53

Query: 70  VRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEH 113
              V  VC +L I +  ++++     K  T  +   ++ R             +    E+
Sbjct: 54  YADVIKVCEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLEY 113

Query: 114 AKTINATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  + T H     D+  + + +R   +  ++   LS +    + +    I  P  
Sbjct: 114 AEDLGADYVATGHYARVKDENGQRLLLRGVDNNKDQTYFLSQLKQHQIKN----ILFPVG 169

Query: 171 RCRREDIRSFLLQRNIS 187
              ++D+R    +  ++
Sbjct: 170 ELEKKDVRRIAEEAGLA 186


>gi|261838378|gb|ACX98144.1| guanosine-5'-monophosphate synthase [Helicobacter pylori 51]
          Length = 508

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 67/188 (35%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +    +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANDKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREAR----YALISEHAKTIN----A 119
            V  +   L+I  + +  K                R+        +  + AK  +     
Sbjct: 254 RVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFEKEAKKHHLKGKI 313

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ + + +     +  P     ++++R 
Sbjct: 314 EFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFK----LIEPLRELFKDEVRL 369

Query: 180 FLLQRNIS 187
              +  IS
Sbjct: 370 LGKELGIS 377


>gi|238897773|ref|YP_002923452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229465530|gb|ACQ67304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 364

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIKFS-AISVDHCLRETAKDEV 70
             ++V +SGG DS      L           + +      +   A +VD  L +T     
Sbjct: 7   KKVVVGMSGGVDSSVAAYLLLEQGYQVCGLFMKNWEEDDNELYCAAAVD--LSDT----- 59

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR--------------YALISEH 113
                VC +L I    V++      +  T  +A  R  R               A +   
Sbjct: 60  ---QAVCDKLNIELHTVNFSAEYWNQVFTLFLAEYRAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + + A  I T H      +  +   +R   +  ++   L  +    L +       P  
Sbjct: 117 LQDLGADYIATGHYVRHQSNNGQHFLLRGIDENKDQSYFLYTIGQQQLANC----LFPIG 172

Query: 171 RCRREDIRSFLLQRNI 186
             ++ ++R    + N+
Sbjct: 173 GLKKSEVRDIAKKLNL 188


>gi|302387387|ref|YP_003823209.1| asparagine synthase [Clostridium saccharolyticum WM1]
 gi|302198015|gb|ADL05586.1| asparagine synthase [Clostridium saccharolyticum WM1]
          Length = 276

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 64/202 (31%), Gaps = 43/202 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG DS  LL                  A++ D  L  +   E+   + V   L 
Sbjct: 24  ICLAFSGGVDSSLLLKVAAEAAEKMGK---TVYAVTFDSRLHPSCDLEIA--ARVAKELG 78

Query: 82  IAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             H VVS    + +             ++  +  + + A  +N   IM     DD     
Sbjct: 79  GVHRVVSVNELEQKEIRFNPVNRCYLCKKKLFRSLKDFAGKMNIPYIMDGTNEDD----- 133

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDPS 193
            +   R       G+  + +       L I  P   L   +  +++      IS    PS
Sbjct: 134 -LHVYRP------GIKALRE-------LGIISPLAELHITKAQVKALASWYGISVASRPS 179

Query: 194 ----------NTDDRFE-RVRV 204
                     NT+  ++   R+
Sbjct: 180 APCMATRLPYNTEIDYDILNRI 201


>gi|210622568|ref|ZP_03293250.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275]
 gi|210154151|gb|EEA85157.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275]
          Length = 357

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 54/221 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------ 72
              +++ +SGG DS      L     D          I V+  L     +E +       
Sbjct: 2   KKKVMLGMSGGVDSSVAAYLLKEQGYD---------VIGVNMMLSNDNTEEEKRMTEDSI 52

Query: 73  --VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHA 114
                V  +L I   V+ ++    +  +       A  R            ++ L  + A
Sbjct: 53  RDARRVAEKLDIPLHVLDFRREFKEKVIDDFIKEYAEGRTPNPCIVCNKFIKFGLFFDVA 112

Query: 115 KTINATLIMTAHTFDDQLE----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +      + T H    ++E    T  +  ++  + K      + + I  +    I  P  
Sbjct: 113 EKFGCDYVATGHYA--RVERDEKTGRLVLKKGESAKKDQTYNLYN-IKQEQLERILLPIG 169

Query: 171 RCRREDIRSFLLQRNISWCEDPSN----------TDDRFER 201
              ++ +R    +  +    D  N           D+ + R
Sbjct: 170 NYEKDTVREIAKKIGL----DVHNKKDSQEICFIKDNDYVR 206


>gi|317182294|dbj|BAJ60078.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori F57]
          Length = 508

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 KVQAMFKDLQIPLNTIDAKE 273


>gi|308063827|gb|ADO05714.1| GMP synthase [Helicobacter pylori Sat464]
          Length = 508

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 KVQAMFKDLQIPLNTIDAKE 273


>gi|254819884|ref|ZP_05224885.1| tRNA(Ile)-lysidine synthetase [Mycobacterium intracellulare ATCC
           13950]
          Length = 125

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
            +V  F++  L       VA+SGG DS+ L      +           +A+ VDH L+  
Sbjct: 12  AAVEAFIKTHLATVDQWCVALSGGPDSLALTAVAAQLRPT--------TAVVVDHGLQPG 63

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           + D           L      V+ +  + Q G       A  A         +   ++  
Sbjct: 64  SADVAEAARAQAVALG----CVAAQVIRVQVGAEGGPEAAARAARYAALAAYHDGPVLLG 119

Query: 126 HTFDDQ 131
           HT DDQ
Sbjct: 120 HTLDDQ 125


>gi|327310318|ref|YP_004337215.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermoproteus uzoniensis 768-20]
 gi|326946797|gb|AEA11903.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermoproteus uzoniensis 768-20]
          Length = 519

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 27/194 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S +E +R  V        +LVAVSGG DS    +     + +R+          V+H L 
Sbjct: 212 SIVERIRAAV---GPHEKVLVAVSGGVDSTVTAVLTARAVGERAVPIF------VNHGLF 262

Query: 63  RETAKDEVRYVSDVCSRLR--IAHSVVSWKNSKPQTGLMAAAREAR-------YALISEH 113
           RE    E   V     RL   + +   S K      G+       R              
Sbjct: 263 REG---EPEEVLSALKRLGLDVVYVDASEKFLARLEGVEDCEERRRIIGETFAEVFAEVA 319

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK   A  +     + D +E+             +        +   L L +  P     
Sbjct: 320 AKIEGAGWLAQGTLYPDVIES-----GAVKGADRIKSHHNVAGLPQWLGLKVLEPLRDFY 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+      + 
Sbjct: 375 KDEVRAIGRALGLP 388


>gi|308062320|gb|ADO04208.1| GMP synthase [Helicobacter pylori Cuz20]
          Length = 508

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   L+  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREAR----YALISEHAKTIN----A 119
            V  +   L+I  + +  K                R+        +  + AK  +     
Sbjct: 254 KVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPEWKRKIIGETFIEVFEKEAKKHHLKGKI 313

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ + + +     +  P     ++++R 
Sbjct: 314 EFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFK----LIEPLRELFKDEVRL 369

Query: 180 FLLQRNIS 187
              +  IS
Sbjct: 370 LGKELGIS 377


>gi|161527848|ref|YP_001581674.1| ExsB family protein [Nitrosopumilus maritimus SCM1]
 gi|160339149|gb|ABX12236.1| ExsB family protein [Nitrosopumilus maritimus SCM1]
          Length = 265

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 37/183 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSR 79
            +++A+SGG DS     AL +  + +  G     A++ D+  L E    E++    +CS 
Sbjct: 16  KVMIALSGGVDS-----ALVAYAAYQKLGDFAI-AVTADYKTLSEE---ELQTAKQICSE 66

Query: 80  LRIAHSVVSWKNSKPQ---TGLMAAAREARYAL---ISEHAKTINATLIMTAHTFDDQLE 133
           + I    + +   + +             R  L   + + AK  +  +I+     DD  E
Sbjct: 67  IGITQFFLDYDELENEEFTKNDSTRCFHCRLELGVHLLKLAKEHHVDVIVDGTNLDDLGE 126

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCED 191
                                       N  I  P +     +  IR       +S  + 
Sbjct: 127 ------------------YRPGIDALRQNG-IRSPLVETNLSKSQIRHIAKSVGLSVHDK 167

Query: 192 PSN 194
           PSN
Sbjct: 168 PSN 170


>gi|253583302|ref|ZP_04860500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
 gi|251833874|gb|EES62437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium varium ATCC 27725]
          Length = 346

 Score = 62.2 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 24/185 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L S              ++++H   E+ KDE++    +C  
Sbjct: 4   KKVVIGMSGGVDSSVAAYLLKS-------EGYGVIGVTLNHKKEESLKDEIKAAQRICHF 56

Query: 80  LRIAHSVVSWKNSKPQTGLMA----------------AAREARYALISEHAKTINATLIM 123
           L I H ++  +    +  +                     + +  ++ E A   NA  + 
Sbjct: 57  LGIEHKIIDIEELFQKEVIDDFLEGYSQGITPSPCVICDEKVKMKILFEIADKENADFVA 116

Query: 124 TAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           T H    +  E       +   +     S M   +  D    +  P     ++ IR    
Sbjct: 117 TGHYSSVEYSEEFKTSLLKVSYDPRKDQSYMLYRLDNDKISRLLFPLHSYEKKQIRDIAK 176

Query: 183 QRNIS 187
              + 
Sbjct: 177 NIGLE 181


>gi|116253697|ref|YP_769535.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|205816894|sp|Q1MC84|MNMA_RHIL3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115258345|emb|CAK09447.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 408

 Score = 62.2 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 19  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 74

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 75  DDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 134

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS R+ + +  G   +      D +            
Sbjct: 135 KELGADALATGH---------YIRSGRNPSPENPGRRALFRPADADRDQSYFLFATTQEQ 185

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R    +  +
Sbjct: 186 IDYLRFPLGGLPKAETRRLAEEMGL 210


>gi|15605784|ref|NP_213161.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Aquifex aeolicus VF5]
 gi|6225492|sp|O66601|GUAA_AQUAE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|2982942|gb|AAC06558.1| GMP synthase [Aquifex aeolicus VF5]
          Length = 510

 Score = 62.2 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 57/188 (30%), Gaps = 30/188 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++ A+SGG DS    +  H  + D+           +DH  LR     E  
Sbjct: 209 IRKTVGDAKVIAALSGGVDSTVAAVLTHRAIGDK------LHCFFIDHGLLR---YKERE 259

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V      L +  +VV               P+       R        E  K   A  +
Sbjct: 260 EVEKNLRSLGLPLTVVDASEEFLEKLKGVEDPEEKRKIIGRTFIEVFEREAKKIEGAEFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +    + D +E            KG            +   +NL +  PF    ++++R 
Sbjct: 320 LQGTLYPDVVE--------SAGIKGSAKIKTHHNVGGLPERMNLKLLEPFRELFKDEVRK 371

Query: 180 FLLQRNIS 187
                 + 
Sbjct: 372 IGKLLGVP 379


>gi|15645037|ref|NP_207207.1| GMP synthase [Helicobacter pylori 26695]
 gi|3122166|sp|O25165|GUAA_HELPY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|2313515|gb|AAD07477.1| GMP synthase (guaA) [Helicobacter pylori 26695]
          Length = 508

 Score = 62.2 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLKIPLNTIDAKE 273


>gi|241206171|ref|YP_002977267.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860061|gb|ACS57728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 403

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 64/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 14  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 69

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 70  DDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 129

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS R+ +    G   +      D +            
Sbjct: 130 KELGADALATGH---------YIRSGRNPSPDNPGRRALFRPADADRDQSYFLFATTQEQ 180

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R    +  +
Sbjct: 181 IDYLRFPLGGLPKAETRRLAEEMGL 205


>gi|261367083|ref|ZP_05979966.1| GMP synthase [Subdoligranulum variabile DSM 15176]
 gi|282571204|gb|EFB76739.1| GMP synthase [Subdoligranulum variabile DSM 15176]
          Length = 514

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 68/194 (35%), Gaps = 20/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  +    +L A+SGG DS      L   +        + + + VDH  L
Sbjct: 200 SFVEHSVQALREKIGDGKVLCALSGGVDSSVCAAMLAKAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHA 114
           R+  +++V  V     +  I    V  ++          A E +          +  + A
Sbjct: 254 RKHEREQVCEVFGEGGQFDINFVCVDARDRFYTKLAGETAPERKRKIIGEEFIRVFEDEA 313

Query: 115 KTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           K I A   +     + D +E+     +    +    + G+ D + +     I  P     
Sbjct: 314 KKIGAVDFLAQGTIYPDVVESGL-GGESATIKSHHNVGGLPDYVDFK---EIVEPLRDLF 369

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 370 KDEVRQAGRELGLP 383


>gi|289581720|ref|YP_003480186.1| asparagine synthase [Natrialba magadii ATCC 43099]
 gi|289531273|gb|ADD05624.1| asparagine synthase [Natrialba magadii ATCC 43099]
          Length = 317

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 67/204 (32%), Gaps = 43/204 (21%)

Query: 3   LSPIESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           ++ +E+ R   R  L     +LVA SGG DS  +    H  L D         A +    
Sbjct: 39  MTTVEAKREAARDELATHDGVLVAFSGGVDSSVVAALAHDALGD------DAVACT---- 88

Query: 62  LRETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALIS 111
               +    + E+   + V   + I H +VS+   +    +          R  R   + 
Sbjct: 89  --AKSETLPEAELEDATRVADEIGIRHEIVSFSELESDQFVENDDERCYHCRTMRLGEMI 146

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL- 170
           E A+ +    +      DD                G G       +     L I  P L 
Sbjct: 147 ETARDLGIETVCDGTNADD---------------PGAGHRPGLQAVEE---LEIHSPLLA 188

Query: 171 -RCRREDIRSFLLQRNISWCEDPS 193
               ++++R+   Q  +S  + PS
Sbjct: 189 HDIAKDEVRAIADQYGLSVADKPS 212


>gi|307637706|gb|ADN80156.1| GMP synthase [Helicobacter pylori 908]
 gi|325996309|gb|ADZ51714.1| GMP synthase [Helicobacter pylori 2018]
 gi|325997898|gb|ADZ50106.1| GMP synthase [Helicobacter pylori 2017]
          Length = 508

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   LH  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLHRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I    +  K 
Sbjct: 254 KVQAMFKDLKIPLDTIDAKE 273


>gi|210620567|ref|ZP_03292115.1| hypothetical protein CLOHIR_00058 [Clostridium hiranonis DSM 13275]
 gi|210155281|gb|EEA86287.1| hypothetical protein CLOHIR_00058 [Clostridium hiranonis DSM 13275]
          Length = 430

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 22/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R+ V    +L+A+SGG DS  +   L   +        +   + V+H L 
Sbjct: 120 NFIEDQVELIRNQVGDKKVLLALSGGVDSSVVAALLIKAIGK------QLVCVHVNHGLM 173

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
           R   ++  V    +      + +     +        + P+        E       E  
Sbjct: 174 RKGESESVVEIFKNQMDA-NLIYVDAEERFLGKLEGVADPEEKRKIIGAEFIRVFEEEAR 232

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K      +     + D +E            K +        +  DL   +  P     +
Sbjct: 233 KLEGIDFLAQGTIYPDIVE------SGTKTAKVVKSHHNVGGLPEDLGFELVEPLYYLFK 286

Query: 175 EDIRSFLLQRNISW 188
           +++R+  ++  +  
Sbjct: 287 DEVRACGVELGLPH 300


>gi|207092000|ref|ZP_03239787.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori HPKX_438_AG0C1]
 gi|207108158|ref|ZP_03242320.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori HPKX_438_CA4C1]
          Length = 508

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E VR  ++  +  A +L AVSGG DS  +   L+  + D         A+ VDH  LR+ 
Sbjct: 199 EIVR--LKEKIADAKVLCAVSGGVDSTVVATLLYRAIKD------NLIAVFVDHGLLRKN 250

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN 91
              E   V  +   L+I  + +  K 
Sbjct: 251 ---EKERVQAMFKDLQIPLNTIDAKE 273


>gi|281418892|ref|ZP_06249910.1| PP-loop domain protein [Clostridium thermocellum JW20]
 gi|281407349|gb|EFB37609.1| PP-loop domain protein [Clostridium thermocellum JW20]
          Length = 269

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 42/199 (21%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +E ++  ++ +     ++VA SGG DS  LL   H VL +      K  A++     R 
Sbjct: 6   KMEKLKARLKEM---ESVIVAFSGGVDSTFLLKVAHDVLGN------KVLAVTA----RS 52

Query: 65  TA--KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKT 116
            A  + E++   +  S   I    +  +    +             ++  ++ I   A+ 
Sbjct: 53  AAFPERELKDAENFASNYGIPFKTIISEELNVEGFAENPPNRCYLCKKELFSKIKRIAED 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRR 174
            +   ++    +DD              +   GL  + +       L I  P   +   +
Sbjct: 113 EDYKFVVEGSNYDDL------------GDYRPGLKAIEE-------LEIVSPLREVGLTK 153

Query: 175 EDIRSFLLQRNISWCEDPS 193
            +IR    +  +   + PS
Sbjct: 154 AEIRKLSKEMGLKTWDKPS 172


>gi|317403592|gb|EFV84082.1| tRNA(Ile)-lysidine synthase [Achromobacter xylosoxidans C54]
          Length = 190

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 26/180 (14%)

Query: 160 DLNLWISRPFLRCRREDIR----SFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
              L   RP+L   R  I     +F         +DP+N D R+ R  +R  +  +    
Sbjct: 6   RDGLTYLRPWLDQDRTTILRAAQAFAGATGWQPVQDPTNADPRYTRAALRELLAPV---- 61

Query: 216 LYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI----------LNIDSTLLF 265
           L  +   ++ +  +    +A        V      A+  D             +      
Sbjct: 62  LDARWPGWRAIVARHARHMAEADEILDEVAREDFAALEPDADGASFSLAAWRRLSPARQA 121

Query: 266 YLLRVSAAICGGQISLPGYRSMERVMLFLK------SGKRGCVSIGRVVIDRRANFLWIT 319
           ++LR    +      +P    +  ++  L+        ++  V     V+      +WI 
Sbjct: 122 HVLRHW--MGRQGARMPTEARLNDLLRQLRGLHSLGHDRQLRVEQAGHVVRCHRGRVWIE 179


>gi|224538050|ref|ZP_03678589.1| hypothetical protein BACCELL_02940 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520340|gb|EEF89445.1| hypothetical protein BACCELL_02940 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            VR  V    +L+A+SGG DS  +   L   + +          + V+H L R+   ++V
Sbjct: 133 LVRRQVGDRKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L+     V   +           P+        E       E  K      
Sbjct: 187 --VEMFGNQLKANLIYVDVTDRFLTKLEGVEDPEQKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 299 LELGLPY 305


>gi|167629769|ref|YP_001680268.1| hypothetical protein HM1_1687 [Heliobacterium modesticaldum Ice1]
 gi|167592509|gb|ABZ84257.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 275

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 40/190 (21%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            +++  +R +    H+LVA SGG DS  LL A H VL +R        A+     + +T 
Sbjct: 14  AALQSALREM---GHVLVAFSGGVDSTFLLKAAHDVLGER------VLAVM---GISQTV 61

Query: 67  -KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINA 119
            K +V    ++ SR+      VS          K         + A +  + + A+    
Sbjct: 62  PKHQVAEARELASRIGAPLLTVSTDEFSREAFVKNGPDRCFHCKTALFETLWQIAEDRQI 121

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDI 177
             I+  +  DD                   +      ++    + +  P L     + +I
Sbjct: 122 PYILDGNNADD-------------------VGDYRPGMMAARRMNVRSPLLEAGLTKAEI 162

Query: 178 RSFLLQRNIS 187
           RS   +  + 
Sbjct: 163 RSLSKELGLP 172


>gi|304321619|ref|YP_003855262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvularcula bermudensis HTCC2503]
 gi|303300521|gb|ADM10120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvularcula bermudensis HTCC2503]
          Length = 409

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 69/210 (32%), Gaps = 35/210 (16%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------RETAKDE 69
           L   A I+VA+SGG DS      +H    D     ++      DH +         A  +
Sbjct: 21  LPKGARIVVAMSGGVDSSVTAALVHRAGYDVVGITLQLY----DHGVAIAKKGACCAGQD 76

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEH 113
           +     V  RL I H V+ +++    + +   A                   ++  +   
Sbjct: 77  IADARAVADRLGIPHYVLDYEDRFGDSVMQDFADTYLAGATPIPCVRCNQRVKFRDLLHT 136

Query: 114 AKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A+ + A  + T H    T DD+     +   R   + G   S        +   ++  P 
Sbjct: 137 ARDLGAAAMATGHYIRRTDDDRG----LAL-RRAEDAGKDQSYFLFATTREQLSFLRFPL 191

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               +E  R    +  +   + P + D  F
Sbjct: 192 GDLPKETTRQIAAELGLGVADKPDSQDICF 221


>gi|90418687|ref|ZP_01226598.1| GMP synthase [Aurantimonas manganoxydans SI85-9A1]
 gi|90336767|gb|EAS50472.1| GMP synthase [Aurantimonas manganoxydans SI85-9A1]
          Length = 518

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + I VDH  LR    DEV 
Sbjct: 214 IRAKVGDGKVICGLSGGVDSSVAAVLIHEAIGD------QLTCIFVDHGLLRMNEADEV- 266

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
            V+       I    V  +++          P+       R       +E  K   A  +
Sbjct: 267 -VAMFRDHYNIPLVHVQAQDTFIDALEGEMDPEVKRKTIGRLFIETFEAEAKKIGGADFL 325

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 326 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRLLGH 382

Query: 183 QRNIS 187
           +  + 
Sbjct: 383 ELGLP 387


>gi|238854516|ref|ZP_04644854.1| GMP synthase [glutamine-hydrolyzing] [Lactobacillus jensenii 269-3]
 gi|260664801|ref|ZP_05865652.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934090|ref|ZP_06339369.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii 208-1]
 gi|313472639|ref|ZP_07813128.1| GMP synthase [Lactobacillus jensenii 1153]
 gi|238832869|gb|EEQ25168.1| GMP synthase [glutamine-hydrolyzing] [Lactobacillus jensenii 269-3]
 gi|239529403|gb|EEQ68404.1| GMP synthase [Lactobacillus jensenii 1153]
 gi|260561284|gb|EEX27257.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301837|gb|EFA94102.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii 208-1]
          Length = 516

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + +      + +AI VDH L R   KDE +
Sbjct: 215 IRKQVGDGKVILGLSGGVDSSVTATLLHKAIGN------QLTAIFVDHGLLR---KDEAK 265

Query: 72  YV-SDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREAR----YALISEHAKTINATLI 122
            V + +   L +    V     + +           R+        + +E AK +N    
Sbjct: 266 QVMAALNRDLGVNIIKVDAKKRFLDKLKGVSEPEQKRKIIGKEFIEVFNEEAKKLNGVKF 325

Query: 123 MTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +   T   D +E            + +        +  DL   +  P  +  ++++R   
Sbjct: 326 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPKDLGFELVEPLRKLFKDEVRELG 379

Query: 182 LQRNISW 188
            +  I  
Sbjct: 380 EKLGIPH 386


>gi|254302170|ref|ZP_04969528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148322362|gb|EDK87612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 343

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 25/185 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +KD +     VC++
Sbjct: 2   KKVVIGISGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCNK 53

Query: 80  LRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTINATLIM 123
           L I+H V++ +     T                       E ++ ++ + A    A  + 
Sbjct: 54  LGISHEVINIRKDFENTVIKYFLDGYSTGITPSPCVICDDEIKFKILFDIADKYKAEYVA 113

Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           T H T  +  E       +         S M   +       +  P     ++ IR   L
Sbjct: 114 TGHYTSVEYSEFFSKYLLKSVHSIIKDQSYMLYRLSPTKLERLIFPLKPYSKQKIREIAL 173

Query: 183 QRNIS 187
           +  + 
Sbjct: 174 KIGLE 178


>gi|291544233|emb|CBL17342.1| GMP synthase (glutamine-hydrolyzing) [Ruminococcus sp. 18P13]
          Length = 554

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
            +V+     +     +L+A+SGG DS  L   L   + +R       + + VDH L R+ 
Sbjct: 244 ATVQSLRDQIGPDGRVLLALSGGVDSSVLAALLAEAIGER------LTCVFVDHGLMRKN 297

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN 91
             DEV   +    +  +    V+ + 
Sbjct: 298 EGDEVE--AAFA-KWDVNFVRVNAEE 320


>gi|302335006|ref|YP_003800213.1| GMP synthase (glutamine-hydrolyzing) [Olsenella uli DSM 7084]
 gi|301318846|gb|ADK67333.1| GMP synthase (glutamine-hydrolyzing) [Olsenella uli DSM 7084]
          Length = 529

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++A+SGG DS  +   +H  + D      + + + V+H  LR+    E  
Sbjct: 213 IREQVGGRKVILALSGGVDSSVVAALVHRAIGD------QLTCVFVNHGLLRKG---EPE 263

Query: 72  YVSDVC-SRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +V   +  +    V  +          S P+        E       E  K  +  +
Sbjct: 264 MVEEVFREQFNVPLVHVHAEERYLRLLAGVSDPEQKRRLIGGEFWKVFFEEAQKIGDVEM 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRS 179
           +     + D +E+      R    K   +    + I +   +   +  P     ++++R+
Sbjct: 324 LAQGTIYPDIIES----GARKTGGKASTIKSHHNLIPFPEGVRFDLIEPLDHFFKDEVRA 379

Query: 180 FLLQRNIS 187
             +   + 
Sbjct: 380 LGIALGLP 387


>gi|27379100|ref|NP_770629.1| GMP synthase [Bradyrhizobium japonicum USDA 110]
 gi|44887956|sp|Q89N53|GUAA_BRAJA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|27352250|dbj|BAC49254.1| GMP synthase [Bradyrhizobium japonicum USDA 110]
          Length = 551

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH L R     E  
Sbjct: 247 IRAQVGKGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRLN---EAE 297

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D+      I    V             + P+T      R       +E  K   A  
Sbjct: 298 QVVDLFRHHYNIPLVHVDASKQFLGELEGVTDPETKRKTIGRLFIEVFEAEAKKIGGADF 357

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 358 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRKLG 414

Query: 182 LQRNIS 187
            +  + 
Sbjct: 415 RELGLP 420


>gi|319406107|emb|CBI79737.1| GMP synthase [Bartonella sp. AR 15-3]
          Length = 518

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 24/192 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V  +H++  +SGG DS  + I LH  + D      + + + VDH L R+ 
Sbjct: 209 EQAVAAIRKKVGKSHVVCGLSGGVDSSVVAILLHEAIGD------QLTCVFVDHGLMRKN 262

Query: 66  AKDEVRYVSDVCSR-LRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
              E   V  +      I    V+  +         + P+       R        E  K
Sbjct: 263 ---EAEEVLTLFREYYNIKLVHVNAADMFINTLEGETDPEKKRKIIGRLFIEVFEEETKK 319

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+V            +        +   + + +  P     ++
Sbjct: 320 IEGAEFLAQGTLYPDVIESV----SAIGEPITIKSHHNVGGLPERMKMQLIEPLRELFKD 375

Query: 176 DIRSFLLQRNIS 187
           D+RS   +  + 
Sbjct: 376 DVRSLGRELGLP 387


>gi|154283359|ref|XP_001542475.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410655|gb|EDN06043.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 543

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 78/237 (32%), Gaps = 47/237 (19%)

Query: 41  SVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA 100
            ++S+R    ++     VDH  RE + DE   VS     L    S+++ +    +    A
Sbjct: 15  QLISERLIPDLQVKPFIVDHLAREGSTDEAHKVSGWLRELGFDPSILTLRCRLTRGQRQA 74

Query: 101 AAREARYALISEHAKTINATLIMTAHTFDDQLE----TVYMRS--------QRDYAEKGM 148
              +   A I    +      +          E    T  M +         RD++ +  
Sbjct: 75  FGLKG-VASIGHIPECHGIYGV---------AESGSVTRLMNAQSTINATRARDFSSRES 124

Query: 149 ----GLSGMCDT--------------ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
               GL     T               + +  +++ RPF    +  + S  LQ  I +  
Sbjct: 125 HSSKGLQPERSTTTDRARRFRADLKLPIAEGGIYLFRPFNSFPKSRLTSTCLQGGIQFVT 184

Query: 191 DPSNTDDRFE-RVRVRRFV------RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
           D +N+D     R  +R  +      R +   ++   ++  Q +  ++ N     +  
Sbjct: 185 DRTNSDPTLTSRNTLRHLLSNDMLPRALQAPSILQLIENSQRISDELGNESNAFLKT 241


>gi|260424888|ref|ZP_05733626.2| PP-loop family protein [Dialister invisus DSM 15470]
 gi|260403540|gb|EEW97087.1| PP-loop family protein [Dialister invisus DSM 15470]
          Length = 285

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 40/201 (19%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L   E +RF ++ +     + VA SGG DS  LL   H+VL  +        A++V   
Sbjct: 22  LLKKQEDLRFRLKEM---GTVAVAFSGGVDSTFLLHEAHAVLGKK--------AVAVTMK 70

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-------LISEHA 114
           L      E +   + C R  I   +V  ++     G     R+  Y         + E A
Sbjct: 71  LNSFPFREWKDAKEFCKREHIRQMIVE-QDQFLIKGFAENERDRCYHCKYFLFSFLKELA 129

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRC 172
           K  + + +     F D      M   R       GL  + +       L +  P      
Sbjct: 130 KKNHISCVADGTNFSD------MGGYRP------GLKALAE-------LGVVSPLREAEL 170

Query: 173 RREDIRSFLLQRNISWCEDPS 193
            +E+IR+   + ++     PS
Sbjct: 171 TKEEIRALSKKEDLPTWNKPS 191


>gi|297526060|ref|YP_003668084.1| GMP synthase, large subunit [Staphylothermus hellenicus DSM 12710]
 gi|297254976|gb|ADI31185.1| GMP synthase, large subunit [Staphylothermus hellenicus DSM 12710]
          Length = 529

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 81/254 (31%), Gaps = 43/254 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E++R   R +     +LVAVSGG DS    + +   +  R         + V+H L 
Sbjct: 222 NIVENIR---RKVKPYEKVLVAVSGGVDSTVTALLVKKAVGKR------LVPVFVNHGLM 272

Query: 63  RETAKDEVRYVSDVCSRLRI-AHSVVS----WKNSKPQTGLMAAAR----EARYALISEH 113
           RE    EV  V +    L I    + +     +  K         R    E         
Sbjct: 273 REG---EVEEVLENLRSLGINPIYIDASNRFLERLKGIRDCEEKRRIIGEEFARIFSDIV 329

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +  +   +    T+ D +E+             +        +   L L +  P     
Sbjct: 330 RRDKDIKWLAQGTTYPDVIES-----GSTPGSDRIKSHHNVAGLPDWLGLKVLEPLRELY 384

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK-MKKFQDLRVKVNN 232
           ++++R   L   +         D  +     R          L ++ + +  + ++++  
Sbjct: 385 KDEVRRLALHLGVP-------KDVAY-----RH---PFPGPGLAVRIIGEVNEEKLRIVR 429

Query: 233 AVAMLIPKYLTVHM 246
             + ++   L  H 
Sbjct: 430 RASRIVEDVLKKHN 443


>gi|218262621|ref|ZP_03477009.1| hypothetical protein PRABACTJOHN_02688 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223270|gb|EEC95920.1| hypothetical protein PRABACTJOHN_02688 [Parabacteroides johnsonii
           DSM 18315]
          Length = 435

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            VR  V    +L+A+SGG DS  +   L   + D+         + V+H L R+   ++V
Sbjct: 133 LVRRQVGDRKVLLALSGGVDSSVVAALLLKAIGDK------LVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L          +         + P+        E       E  K      
Sbjct: 187 VEVFK--NQLNANLIYKDVTDRFLDKLAGVADPEEKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LAQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 299 LELGLPY 305


>gi|189468120|ref|ZP_03016905.1| hypothetical protein BACINT_04514 [Bacteroides intestinalis DSM
           17393]
 gi|189436384|gb|EDV05369.1| hypothetical protein BACINT_04514 [Bacteroides intestinalis DSM
           17393]
          Length = 435

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            VR  V    +L+A+SGG DS  +   L   + D          + V+H L R+   ++V
Sbjct: 133 LVRRQVGNRKVLLALSGGVDSSVVAALLLKAIGD------NLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L+     V               P+        E       E  K      
Sbjct: 187 --VEMFGNQLKANLIYVDATERFLTKLEGVEDPEQKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|308183148|ref|YP_003927275.1| GMP synthase [Helicobacter pylori PeCan4]
 gi|308065333|gb|ADO07225.1| GMP synthase [Helicobacter pylori PeCan4]
          Length = 508

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   L+  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREAR----YALISEHAKTIN----A 119
            V  +   L+I  + +  K                R+        +  + AK  +     
Sbjct: 254 KVQAMFKDLQIPLNTIDAKEIFLSKLKGVSEPELKRKIIGETFIEVFEKEAKKHHLKGKI 313

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ + + +     +  P     ++++R 
Sbjct: 314 EFLAQGTLYPDVIESVSVKGPSKVIKTHHNVGGLPEWMDFK----LIEPLRELFKDEVRL 369

Query: 180 FLLQRNIS 187
              +  IS
Sbjct: 370 LGKELGIS 377


>gi|124485195|ref|YP_001029811.1| hypothetical protein Mlab_0368 [Methanocorpusculum labreanum Z]
 gi|124362736|gb|ABN06544.1| ExsB family protein [Methanocorpusculum labreanum Z]
          Length = 251

 Score = 61.5 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 52/181 (28%), Gaps = 37/181 (20%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--DEVRYV 73
           L   +  LVA+SGG+DSM LL A               SA ++    R      DEV   
Sbjct: 7   LREHSPALVALSGGTDSMTLLAAFVK-------EGGPVSAATI----RSEFTPPDEVTRA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                RL +  +V+       +             +  ++ +  +  +   +      DD
Sbjct: 56  EHFARRLGVNWTVIDVSVLSKENLRFNPQDRCYICKKLIMKKMLEAADGKTVCDGTHADD 115

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISW 188
             E                             L I  PF      +++I +   +  +  
Sbjct: 116 AAE-------------------ERPGRKALKELGIVSPFALAGIGKKEIYALAKELGVPV 156

Query: 189 C 189
            
Sbjct: 157 I 157


>gi|330444363|ref|YP_004377349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pecorum E58]
 gi|328807473|gb|AEB41646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pecorum E58]
          Length = 361

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 41/194 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSV------------LSDRSFGKIKFSAISVDHCLRETAKDE 69
           ++VA+SGG DS  +   L                 +++   +  SA       ++ A   
Sbjct: 5   VVVAMSGGVDSSVVAYLLKRYTSYNVVGLFMKNWEEKTHDDVCLSA-------QDYAD-- 55

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEH 113
              V  VCS+L I +  VS+     +                       RE ++AL+ + 
Sbjct: 56  ---VEKVCSQLDIPYYTVSFVREYQELVFSRFLKEYSLGYTPNPDILCNREIKFALLQKK 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            + +    + T H     L+   +   R           +  T        +  P    +
Sbjct: 113 VRELGGDFLATGHYCRSNLDASGVSLFRGVDRNKDQSYFLSGT-PRQALANVLFPLGEMK 171

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 172 KNEVRALAEEAGLA 185


>gi|149203862|ref|ZP_01880831.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseovarius sp. TM1035]
 gi|149142979|gb|EDM31021.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseovarius sp. TM1035]
          Length = 522

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR+   DEV 
Sbjct: 218 IRAQVGDKQVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRQGEADEV- 270

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V+       I                  S P+T      R          ++   A  +
Sbjct: 271 -VAMFRDNYNIPLIHADEAELFLGELEGVSDPETKRKTIGRLFIDVFQKYASQIEGAEFL 329

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 330 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGR 386

Query: 183 QRNIS 187
           +  + 
Sbjct: 387 ELGLP 391


>gi|160884988|ref|ZP_02065991.1| hypothetical protein BACOVA_02984 [Bacteroides ovatus ATCC 8483]
 gi|237718004|ref|ZP_04548485.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299147700|ref|ZP_07040763.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_23]
 gi|156109338|gb|EDO11083.1| hypothetical protein BACOVA_02984 [Bacteroides ovatus ATCC 8483]
 gi|229452645|gb|EEO58436.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298513883|gb|EFI37769.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_23]
          Length = 435

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 64/187 (34%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            ++  V    +L+A+SGG DS  +   L   + +          + V+H L R+   ++V
Sbjct: 133 LIKRQVGDKKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRL--RIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATL 121
             V    ++L   + +  V+ +      G+            E       E  K      
Sbjct: 187 --VEVFSNQLKANLVYVDVTDRFLNKLAGVEDPEQKRKIIGGEFIRVFEEEARKLNGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFQLVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 299 LELGLPY 305


>gi|171681948|ref|XP_001905917.1| hypothetical protein [Podospora anserina S mat+]
 gi|170940933|emb|CAP66583.1| unnamed protein product [Podospora anserina S mat+]
          Length = 380

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 5/127 (3%)

Query: 88  SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG 147
               +  + G        R   +   AK +    ++T H  DD  ETV M   R    + 
Sbjct: 107 EVVQTIGKKGNCTYCGVFRRQALDRGAKMLGIKHVVTGHNADDVAETVMMNLLRADLSR- 165

Query: 148 MGLSGMCDTILYDLNLWISR--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVR 205
             LS     +  D    + R  P      ++I  +   + + +            R   R
Sbjct: 166 --LSRSTSIVTGDNRSEVKRSKPLKYAYEKEIVLYAFHKKLEYFSTECIYSPEAFRGSAR 223

Query: 206 RFVRDID 212
             ++ ++
Sbjct: 224 GLIKQLE 230


>gi|319408158|emb|CBI81811.1| GMP synthase [Bartonella schoenbuchensis R1]
          Length = 518

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 30/191 (15%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDE 69
             +R  V    ++  +SGG DS    I LH  + +      + + I VDH L R+   +E
Sbjct: 213 AAIRKKVGKGRVICGLSGGVDSSVTAILLHEAIGE------QLTCIFVDHGLMRKNEAEE 266

Query: 70  VRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINAT 120
           V  +        I    V+  +           P+       R        E  K   A 
Sbjct: 267 VLTLFR--DNYNIKLVHVNAAHRFINALKGETDPEKKRKTIGRLFIEVFEEEAKKVGGAQ 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRRED 176
            +     + D +E++        +  G G+          +   +N+ +  P     ++D
Sbjct: 325 FLAQGTLYPDVIESI--------SAVGDGITIKSHHNVGGLPERMNMQLVEPLRELFKDD 376

Query: 177 IRSFLLQRNIS 187
           +RS   +  + 
Sbjct: 377 VRSLGRELGLP 387


>gi|213027555|ref|ZP_03342002.1| C32 tRNA thiolase [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 119

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 11/109 (10%)

Query: 75  DVCSRLRIAHSVVS------WKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHT 127
               +L + + +V        K   P+     +     R  ++   A  + AT I   H 
Sbjct: 15  AYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHH 74

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            DD L+T+++        KGM    M D    D    + RP   CR +D
Sbjct: 75  RDDILQTLFLNMFYGGKMKGMPPKLMSD----DGKHIVIRPLAYCREKD 119


>gi|289423552|ref|ZP_06425353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156054|gb|EFD04718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus anaerobius 653-L]
          Length = 350

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 62/209 (29%), Gaps = 37/209 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEVRYVSDV 76
              +L+ +SGG DS      L     D          + V+  L  R   + +V     V
Sbjct: 3   KKKVLLGMSGGVDSSVAAYLLKKEGYD---------VVGVNMKLWDRPD-EKDVEDAISV 52

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISEHAKTINAT 120
           C +L I   V+  +       +    +E                     + + A+ +   
Sbjct: 53  CEKLDIPFHVIDLQKEFKGKVIENFIKEYEAGHTPNPCVFCNKNIKFGDLFKKAEELGCD 112

Query: 121 LIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            I T H    +   E      ++           M + +  +    I  P  +  ++ IR
Sbjct: 113 YIATGHYALIEYNEEKGIYELKKASNSNKDQTYVMYN-LSQEKLSKILFPIGKYNKDQIR 171

Query: 179 SFLLQRNISWCEDPSNT------DDRFER 201
               +  +     P +       D+ +ER
Sbjct: 172 EMAKEIGLKVYNKPDSQDICFIPDNNYER 200


>gi|254779599|ref|YP_003057705.1| GMP synthase [Helicobacter pylori B38]
 gi|254001511|emb|CAX29529.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Helicobacter pylori B38]
          Length = 508

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   L+  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKG 273


>gi|210135204|ref|YP_002301643.1| GMP synthase [Helicobacter pylori P12]
 gi|226739630|sp|B6JMN5|GUAA_HELP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|210133172|gb|ACJ08163.1| gmp synthase [Helicobacter pylori P12]
          Length = 508

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   L+  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKG 273


>gi|164688047|ref|ZP_02212075.1| hypothetical protein CLOBAR_01692 [Clostridium bartlettii DSM
           16795]
 gi|164602460|gb|EDQ95925.1| hypothetical protein CLOBAR_01692 [Clostridium bartlettii DSM
           16795]
          Length = 265

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 35/189 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E        L     +++A SGG DS  LL      L           A+++   +   +
Sbjct: 5   EKYELLKSKLRDMGKVVIAYSGGVDSNFLLKVASDELGQ------NAIAVTIHAMMH--S 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY---ALISEH---AKTINAT 120
             E+    +   +  + H V+   N   +  +  + +   Y   A+ +     A   +  
Sbjct: 57  DREMDEAKEYTKQFGVKHEVIKVDNFDEKGFIENSKKRCYYCKCAVFNMIKDYAAKNDVK 116

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
            ++      D              +   GL  + +       L +  P       +E+IR
Sbjct: 117 YVLDGTNLSDL------------GDYRPGLKALEE-------LNVVSPLKDSGLTKEEIR 157

Query: 179 SFLLQRNIS 187
               + N+ 
Sbjct: 158 ILSHRLNLK 166


>gi|242017883|ref|XP_002429414.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212514338|gb|EEB16676.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 1407

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 14/181 (7%)

Query: 6    IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD--RSFGKIKFSAISVDHCLR 63
            +++++ F   +     IL+ +S G +S+ +L  L            K    A+  D  L 
Sbjct: 1180 VKALKEF-EMVHDGDRILICISEGKNSLAVLHTLQQYRFYVMSKGMKFDLGAVIFD--L- 1235

Query: 64   ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAREARYALISEHAKTINA 119
            + +   V+ +      L I       K  K     +        + +   +   AK  N 
Sbjct: 1236 KCSNINVKSLLYYLESLGIPCYFDEEKVEKNRDVSKASSFNTCWKIKRRRLYSVAKRKNY 1295

Query: 120  TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +I  +  FDD  E+  + + R+   K M         L    + I RPF+  R + I+ 
Sbjct: 1296 NVIALSQNFDDVAESFLISTFRNGKLKAM----KAHYFLIGEKIRIIRPFVYVREKAIKE 1351

Query: 180  F 180
            +
Sbjct: 1352 Y 1352


>gi|13475784|ref|NP_107351.1| GMP synthase [Mesorhizobium loti MAFF303099]
 gi|21263677|sp|Q987R3|GUAA_RHILO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|14026540|dbj|BAB53137.1| GMP synthetase [Mesorhizobium loti MAFF303099]
          Length = 520

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE 
Sbjct: 215 AIRKQVGKGKVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEA 265

Query: 71  RYVSDVCSRL-RIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINAT 120
             V  +  +   +   +V               P+       R        E  K   A 
Sbjct: 266 AGVVAMFRQHYNLPLILVDASEKFISALEGEVDPEKKRKTIGRLFIEVFEEEAKKLGGAD 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   +N+ +  P     ++++R+ 
Sbjct: 326 FLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRAL 382

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 383 GKELGLP 389


>gi|75674801|ref|YP_317222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
 gi|123614062|sp|Q3SV21|MNMA_NITWN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|74419671|gb|ABA03870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter winogradskyi Nb-255]
          Length = 400

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 46/210 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L S   D     ++      DH     R+    A
Sbjct: 7   LEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLY----DHGAATHRKGACCA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++    +V +RL + H V+ +++   +T +   A                R+ ++  +
Sbjct: 63  GQDIHDARNVAARLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRQVKFRDL 122

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYD 160
              A+ + A  + T H              R  A+    L    DT             +
Sbjct: 123 LATARELGAAALATGHYVS----------SRRLADGSRALLCAADTDRDQSYFLFATTRE 172

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCE 190
              ++  P     ++  R    +  +S  +
Sbjct: 173 QLDFLRFPLGDMTKQQTRELARRFGLSVAD 202


>gi|154244402|ref|YP_001415360.1| GMP synthase [Xanthobacter autotrophicus Py2]
 gi|154158487|gb|ABS65703.1| GMP synthase, large subunit [Xanthobacter autotrophicus Py2]
          Length = 524

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 21/191 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R+ 
Sbjct: 214 ERAIARIREQVGTGRVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLMRQA 267

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
             DEV  VS       I    V               P+       R       +E  K 
Sbjct: 268 EADEV--VSLFRGHYNIPLVHVDASELFLKELEGVEDPEAKRKTIGRLFIDVFDAEARKV 325

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V            +        +   +N+ +  P     +++
Sbjct: 326 GGADFLAQGTLYPDVIESVSFA---GGPSVTIKSHHNVGGLPERMNMKLVEPLRDLFKDE 382

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 383 VRALGRELGLP 393


>gi|317178655|dbj|BAJ56443.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter pylori F30]
          Length = 508

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   L+  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKE 273


>gi|260683439|ref|YP_003214724.1| hypothetical protein CD196_1699 [Clostridium difficile CD196]
 gi|260687035|ref|YP_003218168.1| hypothetical protein CDR20291_1674 [Clostridium difficile R20291]
 gi|260209602|emb|CBA63255.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260213051|emb|CBE04409.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 272

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 35/182 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++VA SGG DS  LL      L +         A+++   +   +  E+         
Sbjct: 23  GSVVVAYSGGVDSNFLLKVAKDTLGE------NVIAVTIHAMMH--SSREIEEAKQYTQN 74

Query: 80  LRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + H +++ +N       +         ++  ++ I E AK  N   I+     DD   
Sbjct: 75  FGVKHIILNIENFDLKEFKENGVDRCYHCKKYIFSKIKEVAKEHNIKYIVDGTNMDDL-- 132

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR--REDIRSFLLQRNISWCED 191
                      +   GL  + +       L +  P       +E+IRS      ++    
Sbjct: 133 ----------GDYRPGLKALSE-------LGVISPLKDSSLKKEEIRSLSKILGLNTFNK 175

Query: 192 PS 193
           PS
Sbjct: 176 PS 177


>gi|254975416|ref|ZP_05271888.1| hypothetical protein CdifQC_08892 [Clostridium difficile QCD-66c26]
 gi|255314545|ref|ZP_05356128.1| hypothetical protein CdifQCD-7_09350 [Clostridium difficile
           QCD-76w55]
 gi|255517220|ref|ZP_05384896.1| hypothetical protein CdifQCD-_08929 [Clostridium difficile
           QCD-97b34]
 gi|255650326|ref|ZP_05397228.1| hypothetical protein CdifQCD_09094 [Clostridium difficile
           QCD-37x79]
 gi|306520292|ref|ZP_07406639.1| ATP-utilizing enzymes of the PP-loop superfamily [Clostridium
           difficile QCD-32g58]
          Length = 267

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 35/182 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++VA SGG DS  LL      L +         A+++   +   +  E+         
Sbjct: 18  GSVVVAYSGGVDSNFLLKVAKDTLGE------NVIAVTIHAMMH--SSREIEEAKQYTQN 69

Query: 80  LRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + H +++ +N       +         ++  ++ I E AK  N   I+     DD   
Sbjct: 70  FGVKHIILNIENFDLKEFKENGVDRCYHCKKYIFSKIKEVAKEHNIKYIVDGTNMDDL-- 127

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR--REDIRSFLLQRNISWCED 191
                      +   GL  + +       L +  P       +E+IRS      ++    
Sbjct: 128 ----------GDYRPGLKALSE-------LGVISPLKDSSLKKEEIRSLSKILGLNTFNK 170

Query: 192 PS 193
           PS
Sbjct: 171 PS 172


>gi|304407559|ref|ZP_07389211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus curdlanolyticus YK9]
 gi|304343510|gb|EFM09352.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus curdlanolyticus YK9]
          Length = 376

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +F      HC   TA+++   V
Sbjct: 9   RVVVGMSGGVDSSVTALLLKQEGYDVIGIFMKNWDDTDEFG-----HC---TAEEDAEDV 60

Query: 74  SDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAA-REARYALISEHAKTI 117
             VC ++ I +  V+++                            RE ++    + A  +
Sbjct: 61  RRVCDQIGIPYYTVNFEQQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGEFLQKAIDL 120

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H      T +   ET  +R      ++   L  +  + L         P   
Sbjct: 121 GADYLATGHYARVERTAN--GETKLLRGVDSNKDQTYFLHQLDQSQLAKAMF----PIGD 174

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  ++
Sbjct: 175 LPKPEVRRIAEEAGLA 190


>gi|319956181|ref|YP_004167444.1| gmp synthase (glutamine-hydrolyzing) [Nitratifractor salsuginis DSM
           16511]
 gi|319418585|gb|ADV45695.1| GMP synthase (glutamine-hydrolyzing) [Nitratifractor salsuginis DSM
           16511]
          Length = 514

 Score = 61.1 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L  VSGG DS  +   LH  + D      +  A+ VD   LR+    E +
Sbjct: 211 IRKQVGDKKVLCGVSGGVDSSVVAALLHEAIGD------QLIAVFVDTGLLRKN---EAQ 261

Query: 72  YVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTINATLIM 123
            V D+  +L I    V           G+    R+ +        +  E AK     +  
Sbjct: 262 QVQDMFKQLGIDLITVDASEKFLSRLKGVTDPERKRKIIGETFIEVFDEEAKKHADEVSF 321

Query: 124 TAH-TF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            A  T   D +E+V ++      +    + G+ + + ++    +  P     ++++R   
Sbjct: 322 LAQGTLYTDVIESVSVKGPSKTIKSHHNVGGLPEWMTFE----LVEPLREIFKDEVRKLG 377

Query: 182 LQRNIS 187
           L+  + 
Sbjct: 378 LELGLP 383


>gi|223986315|ref|ZP_03636326.1| hypothetical protein HOLDEFILI_03636 [Holdemania filiformis DSM
           12042]
 gi|223961723|gb|EEF66224.1| hypothetical protein HOLDEFILI_03636 [Holdemania filiformis DSM
           12042]
          Length = 435

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 22/186 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   +        +   + V+H L R+   + V
Sbjct: 133 LIRRQVGDKKVLLALSGGVDSSVVAALLIKAIGK------QLVCVHVNHGLMRKGESESV 186

Query: 71  RYV-SDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
             V  +      + +   S +        + P+        E       E  K      +
Sbjct: 187 IEVFRNQMDA-NLIYVDASERFLTKLEGVADPEQKRKIIGAEFIRVFEEEARKLEGIDFL 245

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            K +        +  D+N  +  P     ++++R+  L
Sbjct: 246 AQGTIYPDIVE------SGTKTAKVVKSHHNVGGLPEDMNFELVEPLYYLFKDEVRACGL 299

Query: 183 QRNISW 188
           +  +  
Sbjct: 300 ELGLPH 305


>gi|319782264|ref|YP_004141740.1| GMP synthase, large subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168152|gb|ADV11690.1| GMP synthase, large subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 520

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE 
Sbjct: 215 AIRKQVGKGKVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEA 265

Query: 71  RYVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINAT 120
             V  +      +   +V+  +         S P+       R        E  K   A 
Sbjct: 266 AGVVAMFREHYNLPLILVNASDRFIDALEGESDPEKKRKTIGRLFIEVFEEEAKKLGGAE 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   +N+ +  P     ++++R+ 
Sbjct: 326 FLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPARMNMQLVEPLRELFKDEVRAL 382

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 383 GKELGLP 389


>gi|302671339|ref|YP_003831299.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
 gi|302395812|gb|ADL34717.1| PP-loop family protein [Butyrivibrio proteoclasticus B316]
          Length = 286

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 63/197 (31%), Gaps = 38/197 (19%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            ++ +R +++SL     + V  SGG DS  L++  H VL D++   +  +A+ V      
Sbjct: 14  KLDKLRAYIKSL---GSLAVGFSGGVDSSLLMVVAHDVLGDKAIA-VTCTAVFV------ 63

Query: 65  TAKDEVRYVSDVCSRLRIA---HSVVSWKNSKPQTGLMAAAREARYALIS---EHAKTIN 118
               E+R   D C+   I      V        +          +  + S     A    
Sbjct: 64  -PDRELREAHDFCAERGIRQLTCKVDPLSKENVRHNPPDRCYHCKNMIFSEIKRIAAENG 122

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRED 176
              +      DD              +   GL  + +       L I+ P       ++D
Sbjct: 123 IEYVAEGSNMDDL------------GDYRPGLRAVEE-------LEITSPLRQAELTKDD 163

Query: 177 IRSFLLQRNISWCEDPS 193
           IR       +     PS
Sbjct: 164 IRQISRALGLPTWSKPS 180


>gi|294084590|ref|YP_003551348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664163|gb|ADE39264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 419

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 37/226 (16%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           LS I S+ F          ++VA+SGG DS      LH    +     ++      DH +
Sbjct: 30  LSAINSLGFA--KAPADTRVVVAMSGGVDSSVTAAMLHDEGYEVIGITLQLY----DHGV 83

Query: 63  RET------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----R--------- 103
                    A  ++     V +RL I H V+ +++      +   A    R         
Sbjct: 84  AVQTKGACCAGIDIHDARTVSARLGIPHYVLDYESKFRDQVMEDFADSYLRGETPIPCVR 143

Query: 104 ---EARYALISEHAKTINATLIMTAHTFDDQLET----VYMRSQRDYAEKGMGLSGMCDT 156
                ++  +   A+ + A  + T H    +LET    V  R      ++   L      
Sbjct: 144 CNQTVKFTDLLTTAQELGADCLATGHYVQ-RLETPAGPVLRRGIDASKDQSYFLFATTAE 202

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            +     ++  P     +++ R    +  ++  E P + D  F   
Sbjct: 203 QM----DYLRFPLGGLTKDETRDLARKYGLAVSEKPDSQDICFVPN 244


>gi|206902001|ref|YP_002251471.1| hypothetical protein DICTH_1659 [Dictyoglomus thermophilum H-6-12]
 gi|206741104|gb|ACI20162.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
          Length = 268

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 47/203 (23%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E ++ F++       ++VA SGG DS  LL      L +         A+++     
Sbjct: 3   EKLEKLKNFLKE---CQKVIVAYSGGVDSTFLLKIAKDTLGE------NVLAVTL----- 48

Query: 64  ETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALISE 112
             +    K E+    +   +L++ H +++      +              ++  +  I E
Sbjct: 49  -VSPIFPKKEIEEAKEFAKKLKVQHIIINNDELLRKREFIENPPDRCYICKKYNFQKILE 107

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-- 170
            AK  N   I+     DD                   L            L I  P +  
Sbjct: 108 IAKEKNIKCILDGSNADD-------------------LKDYRPGRKALKELGILSPLMEV 148

Query: 171 RCRREDIRSFLLQRNISWCEDPS 193
              +E+IR    + N+   E PS
Sbjct: 149 GFTKEEIRELSKKLNLPTSEKPS 171


>gi|294807986|ref|ZP_06766763.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294444799|gb|EFG13489.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 450

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 64/187 (34%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            ++  V    +L+A+SGG DS  +   L   + +          + V+H L R+   ++V
Sbjct: 148 LIKRQVGDKKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEDV 201

Query: 71  RYVSDVCSRL--RIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATL 121
             V    ++L   + +  V+ +      G+            E       E  K      
Sbjct: 202 --VEVFSNQLKANLIYVDVTDRFLNKLAGVEDPEQKRKIIGGEFIRVFEEEARKLNGIDF 259

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 260 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFELVEPLRQLFKDEVRACG 313

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 314 LELGLPY 320


>gi|237712767|ref|ZP_04543248.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409743|ref|ZP_06086281.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|294645358|ref|ZP_06723069.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|298483134|ref|ZP_07001314.1| GMP synthase, C- domain protein [Bacteroides sp. D22]
 gi|229447179|gb|EEO52970.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352396|gb|EEZ01498.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|292639296|gb|EFF57603.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|295084597|emb|CBK66120.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit [Bacteroides xylanisolvens XB1A]
 gi|298270651|gb|EFI12232.1| GMP synthase, C- domain protein [Bacteroides sp. D22]
          Length = 435

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 64/187 (34%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            ++  V    +L+A+SGG DS  +   L   + +          + V+H L R+   ++V
Sbjct: 133 LIKRQVGDKKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRL--RIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATL 121
             V    ++L   + +  V+ +      G+            E       E  K      
Sbjct: 187 --VEVFSNQLKANLIYVDVTDRFLNKLAGVEDPEQKRKIIGGEFIRVFEEEARKLNGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 299 LELGLPY 305


>gi|53715285|ref|YP_101277.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46]
 gi|81608253|sp|Q64P39|MNMA3_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|52218150|dbj|BAD50743.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Bacteroides fragilis YCH46]
          Length = 362

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 51/195 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LV +SGG DS    + L           +                DE +   ++ 
Sbjct: 4   SKKRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELA 51

Query: 78  SRLRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATL 121
           +R+ I H V   +     T     +   R+ R             + ++ E A  +    
Sbjct: 52  ARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDW 111

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFL 170
           I T H              R     G       D    D + ++ R           P  
Sbjct: 112 IATGH------------YSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLG 159

Query: 171 RCRREDIRSFLLQRN 185
              ++ +R +L ++ 
Sbjct: 160 NYTKQTVRDYLHEKG 174


>gi|254468139|ref|ZP_05081545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
           proteobacterium KB13]
 gi|207086949|gb|EDZ64232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta
           proteobacterium KB13]
          Length = 364

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 60/216 (27%), Gaps = 62/216 (28%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVR 71
              +I+V +SGG DS      L                    H +R        A D+  
Sbjct: 2   KKKNIIVGLSGGVDSAVTAHILKQQG----------------HNVRGLFMKNWEADDDDE 45

Query: 72  YVS---------DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REAR 106
           Y S          V  ++ I   VV++     +                        E +
Sbjct: 46  YCSSKQDLIDAISVAEKIGIDIEVVNFAKEYKEKVFNLFIDGLKKGFTPNPDILCNSEIK 105

Query: 107 YALISEHAKTINATLIMTAHTFDDQLET----VYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           +     HA  + A  I T H   D +E       ++      ++   L  +    L    
Sbjct: 106 FEAFLNHAMQLGADHIATGHYA-DVVEKDGLFYLLKGMDSTKDQSYFLHKLNQQQLSKS- 163

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                P  +  + D+R    + N+       N D +
Sbjct: 164 ---IFPLGKILKSDVRKIAKENNL------HNHDRK 190


>gi|319654551|ref|ZP_08008633.1| bifunctional GMP synthase/glutamine amidotransferase [Bacillus sp.
           2_A_57_CT2]
 gi|317393726|gb|EFV74482.1| bifunctional GMP synthase/glutamine amidotransferase [Bacillus sp.
           2_A_57_CT2]
          Length = 517

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 207 NFIEIEMEKIRQEVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 260

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R   KDE   V         +    V  +          S P+        E  Y    E
Sbjct: 261 R---KDEAEGVMKTFADGFNMNVIKVDAQERFMNKLKGVSDPEQKRKIIGNEFIYVFDDE 317

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      +     + D +E            + +        +  D+   +  P    
Sbjct: 318 AAKLQGIDFLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 371

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 372 FKDEVRALGTELGIP 386


>gi|209964264|ref|YP_002297179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum centenum SW]
 gi|259495835|sp|B6ISD0|MNMA_RHOCS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209957730|gb|ACI98366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum centenum SW]
          Length = 392

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 47/219 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET---A 66
                    ++VA+SGG DS      L     D     ++      DH L   R+    A
Sbjct: 6   FDKAPQDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLY----DHGLTVGRKGACCA 61

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALI 110
             ++     V  R+ I H V+ +++   Q+ +   A                   ++  +
Sbjct: 62  GQDIYDARQVADRIDIPHYVLDYESRFGQSVIDDFADSYLRGETPIPCVRCNQRVKFRDL 121

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YD 160
              A+ + A  + T H             +R     G  L    D               
Sbjct: 122 LAQARDLGADCLATGHYA-----------RRVAGPTGPALHRGADPARDQSYFLFATTPA 170

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
              ++  P     + + R+   +  ++  + P + D  F
Sbjct: 171 QLDYLRFPIGHLPKSETRALAERLGLAVADKPDSQDICF 209


>gi|304436306|ref|ZP_07396284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370711|gb|EFM24358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 361

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 63/205 (30%), Gaps = 53/205 (25%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----------- 67
              ++VA+SGG DS      L     +          + V   L E A+           
Sbjct: 3   KQRVVVAMSGGVDSSVTAALLQEQGYE---------VVGVTMRLSEEARDADLDGRSCCS 53

Query: 68  ----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAREA---------RYALI 110
               D+ R V+D+   L I H V+ + +   +  +       AR           RY   
Sbjct: 54  LSSVDDARRVADI---LGIPHYVMDFTDPFQRLVIDYFTQEYARGRTPNPCIACNRYIKF 110

Query: 111 SEHAKT---INATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
               +    + A  I T H       +D   T      R   +     S +   +  ++ 
Sbjct: 111 EGLLEKTRALGAQYIATGHYARITHTEDG--TY---HLRKGIDAAKDQSYVLYHLTQEMM 165

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P    R+++IR       + 
Sbjct: 166 DHVLFPLGDYRKDEIRRMAEDYGLP 190


>gi|253567176|ref|ZP_04844626.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5]
 gi|251944007|gb|EES84526.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5]
          Length = 362

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 51/195 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LV +SGG DS    + L           +                DE +   ++ 
Sbjct: 4   SKKRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELA 51

Query: 78  SRLRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATL 121
           +R+ I H V   +     T     +   R+ R             + ++ E A  +    
Sbjct: 52  ARMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDW 111

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFL 170
           I T H              R     G       D    D + ++ R           P  
Sbjct: 112 IATGH------------YSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLG 159

Query: 171 RCRREDIRSFLLQRN 185
              ++ +R +L ++ 
Sbjct: 160 NYTKQTVRDYLREKG 174


>gi|255693956|ref|ZP_05417631.1| GMP synthase domain protein [Bacteroides finegoldii DSM 17565]
 gi|260620230|gb|EEX43101.1| GMP synthase domain protein [Bacteroides finegoldii DSM 17565]
          Length = 435

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 26/188 (13%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDE 69
            ++  V    +L+A+SGG DS  +   L   + D          + V+H L  R  ++D 
Sbjct: 133 LIKRQVGDKKVLLALSGGVDSSVVAALLLKAIGD------NLVCVHVNHGLMRRGESEDV 186

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINAT 120
              V    ++L+     V   +         + P+        E       E  K     
Sbjct: 187 ---VEVFSNQLKANLIYVDATDRFLNKLAGVADPEQKRKIIGGEFIRVFEEEARKLDGID 243

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E            K +        +  DL   +  P  +  ++++R+ 
Sbjct: 244 FLGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFELVEPLRQLFKDEVRAC 297

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 298 GLELGLPY 305


>gi|126699388|ref|YP_001088285.1| hypothetical protein CD1779 [Clostridium difficile 630]
 gi|255100916|ref|ZP_05329893.1| hypothetical protein CdifQCD-6_08894 [Clostridium difficile
           QCD-63q42]
 gi|255306806|ref|ZP_05350977.1| hypothetical protein CdifA_09447 [Clostridium difficile ATCC 43255]
 gi|115250825|emb|CAJ68649.1| conserved hypothetical protein [Clostridium difficile]
          Length = 267

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 35/182 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++VA SGG DS  LL      L +         A+++   +   +  E+         
Sbjct: 18  GSVVVAYSGGVDSNFLLKVAKDTLGE------NVIAVTIHAMMH--SSREIEEAKQYTQN 69

Query: 80  LRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + H +++ +N       +         ++  ++ I E AK  N   I+     DD   
Sbjct: 70  FGVKHIILNIENFDLKEFKENGVDRCYHCKKYIFSKIKEVAKEHNIKYIVDGTNIDDL-- 127

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR--REDIRSFLLQRNISWCED 191
                      +   GL  + +       L +  P       +E+IRS      ++    
Sbjct: 128 ----------GDYRPGLKALSE-------LGVISPLKDSSLKKEEIRSLSKTLGLNTFNK 170

Query: 192 PS 193
           PS
Sbjct: 171 PS 172


>gi|60683221|ref|YP_213365.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343]
 gi|81313727|sp|Q5L8X6|MNMA3_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|60494655|emb|CAH09456.1| putative tRNA methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|301164740|emb|CBW24299.1| putative tRNA methyltransferase [Bacteroides fragilis 638R]
          Length = 362

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 51/195 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LV +SGG DS    + L           +                DE +   ++ 
Sbjct: 4   SKKRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELA 51

Query: 78  SRLRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATL 121
           +R+ I H V   +     T     +   R+ R             + ++ E A  +    
Sbjct: 52  ARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDW 111

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFL 170
           I T H              R     G       D    D + ++ R           P  
Sbjct: 112 IATGH------------YSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLG 159

Query: 171 RCRREDIRSFLLQRN 185
              ++ +R +L ++ 
Sbjct: 160 NYTKQTVRDYLREKG 174


>gi|237741407|ref|ZP_04571888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
 gi|229430939|gb|EEO41151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 4_1_13]
          Length = 343

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 35/190 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +KD +     VC +
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCDK 53

Query: 80  LRIAHSVVSWKNSKP-----------QTGLMAAAR-----EARYALISEHAKTINATLIM 123
           L I H VV+ +               +TG+  +       E ++ ++ + A    A  + 
Sbjct: 54  LGIIHKVVNIRKDFENIVIKYFLDGYKTGITPSPCIICDDEIKFKILFDIADKYKAEYVA 113

Query: 124 TAHTFDDQLE------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T H     +E         ++S     +     S M   +  +    +  P     +++I
Sbjct: 114 TGHYTS--VEYSKIFSKYLLKSVHSIIKDQ---SYMLYRLSSNKLERLIFPLKDYSKQEI 168

Query: 178 RSFLLQRNIS 187
           R   L+  + 
Sbjct: 169 REIALKIGLE 178


>gi|260462692|ref|ZP_05810898.1| GMP synthase, large subunit [Mesorhizobium opportunistum WSM2075]
 gi|259031598|gb|EEW32868.1| GMP synthase, large subunit [Mesorhizobium opportunistum WSM2075]
          Length = 520

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE  
Sbjct: 216 IRKQVGKGKVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEAA 266

Query: 72  YVSDVCSRL-RIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V  +  +   +   +V               P+       R        E  K   A  
Sbjct: 267 GVVAMFRQHYNLPLILVDASEKFISALEGEVDPEKKRKTIGRLFIEVFEEEAKKLGGADF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R+  
Sbjct: 327 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  + 
Sbjct: 384 KELGLP 389


>gi|329765762|ref|ZP_08257331.1| ExsB family protein [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137828|gb|EGG42095.1| ExsB family protein [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 265

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 37/183 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSR 79
            +++A+SGG DS     AL +  + +  G     A++ D+  L   +K+E+     +CS 
Sbjct: 16  KVMIALSGGVDS-----ALVAYAAFQKLGNSAI-AVTADYKTL---SKEELETAKQICSE 66

Query: 80  LRIAHSVVSWKNSKPQ---TGLMAAAREARYAL---ISEHAKTINATLIMTAHTFDDQLE 133
           + I   +V +   + +             R  L   +   AK  +  +I+     DD  E
Sbjct: 67  IGIKQILVDYDELQNEEFVKNSSDRCFHCRLELGDHLISLAKQHDVEVIVDGTNLDDLGE 126

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIRSFLLQRNISWCED 191
                                       N  IS P +     + +IRS      +S  + 
Sbjct: 127 ------------------YRPGIEALKKNG-ISSPLVETRFTKNEIRSTAKSVGLSIYDK 167

Query: 192 PSN 194
           PSN
Sbjct: 168 PSN 170


>gi|323702327|ref|ZP_08113992.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323532633|gb|EGB22507.1| PP-loop domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 270

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 26/138 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++     +     +L+A SGG DS  LL  L   L  R+   +  +AI         +
Sbjct: 6   EKLKNLREKIRGYGSVLIAFSGGVDSTLLLKILAEELPSRT---LAVTAI---------S 53

Query: 67  K----DEVRYVSDVCSRLRIAHSVV--------SWKNSKPQTGLMAAAREARYALISEHA 114
                +E+     +   L + H ++         + ++ P+       +  R++ + E A
Sbjct: 54  DTFTLEEIERAQKLAKELGVEHLLIESTEMTDQRFVSNPPER--CYYCKHIRFSKLKEIA 111

Query: 115 KTINATLIMTAHTFDDQL 132
           +      I+     DD  
Sbjct: 112 RDRGIENIVDGSNIDDLA 129


>gi|15899931|ref|NP_344536.1| GMP synthase PP-ATPase subunit [Sulfolobus solfataricus P2]
 gi|284173893|ref|ZP_06387862.1| GMP synthase PP-ATPase subunit [Sulfolobus solfataricus 98/2]
 gi|44887908|sp|Q97TZ8|GUAAB_SULSO RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|13816676|gb|AAK43326.1| GMP synthase, PP-ATPase domain (guaA) [Sulfolobus solfataricus P2]
 gi|261601607|gb|ACX91210.1| GMP synthase (glutamine-hydrolyzing) [Sulfolobus solfataricus 98/2]
          Length = 367

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 70/199 (35%), Gaps = 27/199 (13%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF   S +E +   +R  +    +L AVSGG DS    +  +++L D+    +      V
Sbjct: 1   MFDPASFVEEIGPQLRQKLGNEKVLAAVSGGVDSTTAAVLAYNLLGDKVIPVL------V 54

Query: 59  DHC-LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA---------AAREARYA 108
           D   LR+    E   + D  S + + + ++  K     + +             RE  Y+
Sbjct: 55  DTGFLRKN---EAEKIKDYLSNI-LPNLIIVDKKETFISEIEGIDDAEMKRKRFRELFYS 110

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            IS   K  NA  +M      D +ET     Q     +   L  +      +    +  P
Sbjct: 111 TISSLMKKFNARYLMQGTIAADWVET-----QGGIKTQHNVLVQIGIDTEKEWGFTLIEP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R       + 
Sbjct: 166 LADLYKNEVRELARYLKLP 184


>gi|291296315|ref|YP_003507713.1| GMP synthase large subunit [Meiothermus ruber DSM 1279]
 gi|290471274|gb|ADD28693.1| GMP synthase, large subunit [Meiothermus ruber DSM 1279]
          Length = 508

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+AVSGG DS  L + L   + DR       +A+ VDH  LR   + E  
Sbjct: 204 IRAKVGDEKVLLAVSGGVDSSTLALLLARAIGDR------MTAVFVDHGLLRLGERQE-- 255

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAK--TINAT 120
            V      L  A  VV               P+       RE       E  +       
Sbjct: 256 -VEQALRPLGKALRVVEASGQFLSALRGVTDPEQKRKIVGREFIRVFEREARQLSAQGYR 314

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    +        +        +  DL   +  PF    ++++R  
Sbjct: 315 WLAQGTLYPDVIES----AGSGEGSANIKSHHNVGGLPEDLQFELLEPFRYLFKDEVREL 370

Query: 181 LLQRNIS 187
            L   + 
Sbjct: 371 ALLLGLP 377


>gi|291550741|emb|CBL27003.1| conserved hypothetical protein TIGR00268 [Ruminococcus torques
           L2-14]
          Length = 273

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 42/200 (21%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + +  ++ +++ L     + +A S G DS  LL   H +L D         AI+V    +
Sbjct: 7   NKLAHLKEYIKEL---DSVAIAFSSGVDSTFLLKVAHEILGD------NVMAITV----Q 53

Query: 64  ETA--KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAK 115
            ++  K E+      C +  I H V      K +             + A +  I   A+
Sbjct: 54  SSSFPKRELNEAIAFCKKEDIRHKVCQVDEMKIEGFSQNPPNRCYLCKHALFEKIGAIAE 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCR 173
                 +      DD              +   GL  + +       L +  P       
Sbjct: 114 KNEIAYVAEGSNMDDL------------GDYRPGLQAVAE-------LGVKSPLREAGLT 154

Query: 174 REDIRSFLLQRNISWCEDPS 193
           + +IR    +  +S  E PS
Sbjct: 155 KAEIRELSKEMGLSTWEKPS 174


>gi|153808320|ref|ZP_01960988.1| hypothetical protein BACCAC_02613 [Bacteroides caccae ATCC 43185]
 gi|149129223|gb|EDM20439.1| hypothetical protein BACCAC_02613 [Bacteroides caccae ATCC 43185]
          Length = 435

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            ++  V    +L+A+SGG DS  +   L   + D          + V+H L R+   ++V
Sbjct: 133 LIKRQVGDKKVLLALSGGVDSSVVAALLLKAIGD------NLVCVHVNHGLMRKGESEDV 186

Query: 71  RYVSDVCSRL--RIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATL 121
             V    ++L   + +  V+ +      G+            E       E  K      
Sbjct: 187 --VEVFSNQLKANLIYLDVTDRFLDKLAGVEDPEQKRKIIGSEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFQLVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 299 LELGLPY 305


>gi|317009655|gb|ADU80235.1| GMP synthase [Helicobacter pylori India7]
          Length = 508

 Score = 60.7 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +  A +L AVSGG DS  +   L+  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANAKVLCAVSGGVDSTVVATLLYRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 KVQAMFKDLQIPLNTIDAKE 273


>gi|89068296|ref|ZP_01155706.1| GMP synthase (glutamine-hydrolyzing) [Oceanicola granulosus
           HTCC2516]
 gi|89046213|gb|EAR52271.1| GMP synthase (glutamine-hydrolyzing) [Oceanicola granulosus
           HTCC2516]
          Length = 519

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E++R  +R  V  A ++  +SGG DS    + +H  + D      + + + VDH  LR+ 
Sbjct: 210 EAIRL-IREQVGDARVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRQN 262

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKT 116
             +EV  V        I        +         S P+       R        E  K 
Sbjct: 263 EAEEV--VGMFRDAYNIPLIHADEADLFLGELEGVSDPEVKRKTIGRLFIDVFQREANKI 320

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A+ +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 321 EGASFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 377

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 378 VRALGHELGLP 388


>gi|147920112|ref|YP_686126.1| hypothetical protein RCIA125 [uncultured methanogenic archaeon
           RC-I]
 gi|110621522|emb|CAJ36800.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 271

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 43/206 (20%)

Query: 1   MFLSPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M  + +E+ R  ++ ++     +LVA SGG DS  LL          + G  +  A++  
Sbjct: 1   MSSTILEAKRIRLQEILRDMGSVLVAFSGGVDSTFLLRCAVD-----TLGPDQVVAVT-- 53

Query: 60  HCLRETAK----DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYAL 109
                T+     +E  Y  ++   +   H ++          +          ++ RY  
Sbjct: 54  ----ATSSTLPPEERGYAVELAGLIGARHVLIHADELGSPDFAANPPNRCYYCKQVRYTA 109

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + +  + +    I+     DD                G    GM         L +  P 
Sbjct: 110 LKQVQQELGIESIIDGANADD---------------TGDYRPGMAA----GRELGVRSPL 150

Query: 170 L--RCRREDIRSFLLQRNISWCEDPS 193
           L     + +IR    Q  +   + PS
Sbjct: 151 LEAGLSKSEIRELSKQAGLPTWDRPS 176


>gi|55981521|ref|YP_144818.1| GMP synthase [Thermus thermophilus HB8]
 gi|81363900|sp|Q5SI28|GUAA_THET8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|159795609|pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus
 gi|159795610|pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus
 gi|159795611|pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus
 gi|159795612|pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus
 gi|55772934|dbj|BAD71375.1| GMP synthase [Thermus thermophilus HB8]
          Length = 503

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E +   VR       +L+AVSGG DS  L + L     D         A+ VDH  LR 
Sbjct: 196 LEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHL-------AVFVDHGLLRL 248

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
             ++E   V      L +   VV  K            P+       RE   A      +
Sbjct: 249 GEREE---VEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARE 305

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +     + D +E+        +    +        +  DL   +  PF    ++
Sbjct: 306 RGPFRFLAQGTLYPDVIES-----AGGHGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKD 360

Query: 176 DIRSFLLQRNIS 187
           ++R   L   + 
Sbjct: 361 EVRELALLLGLP 372


>gi|23500114|ref|NP_699554.1| GMP synthase [Brucella suis 1330]
 gi|161620433|ref|YP_001594319.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Brucella canis ATCC 23365]
 gi|254702758|ref|ZP_05164586.1| GMP synthase [Brucella suis bv. 3 str. 686]
 gi|260568335|ref|ZP_05838804.1| GMP synthase [Brucella suis bv. 4 str. 40]
 gi|261753353|ref|ZP_05997062.1| GMP synthase [Brucella suis bv. 3 str. 686]
 gi|38257625|sp|Q8FWT4|GUAA_BRUSU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738394|sp|A9MEB0|GUAA_BRUC2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|23463708|gb|AAN33559.1| GMP synthase [Brucella suis 1330]
 gi|161337244|gb|ABX63548.1| GMP synthase, C-terminal domain [Brucella canis ATCC 23365]
 gi|260155000|gb|EEW90081.1| GMP synthase [Brucella suis bv. 4 str. 40]
 gi|261743106|gb|EEY31032.1| GMP synthase [Brucella suis bv. 3 str. 686]
          Length = 520

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++ A+SGG DS    +  H  + D      + + I VDH L R  
Sbjct: 210 EQAVEAIRKQVGSGKVICALSGGVDSSVAALLAHEAVGD------QLTCILVDHGLMR-- 261

Query: 66  AKDEVRYVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
            KDE + V ++      +   +V   +         S P+       R        E  K
Sbjct: 262 -KDEAQQVVEMFREHYNLPLILVDASDRFIGALEGESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E+V   S        +        +   + + +  P     ++
Sbjct: 321 LGGADFLVQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKD 377

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 378 EVRLLGKELGLP 389


>gi|306840809|ref|ZP_07473556.1| GMP synthase [Brucella sp. BO2]
 gi|306289204|gb|EFM60453.1| GMP synthase [Brucella sp. BO2]
          Length = 520

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++ A+SGG DS    +  H  + D      + + I VDH L R  
Sbjct: 210 EQAVEAIRKQVGSGRVICALSGGVDSSVAALLAHEAVGD------QLTCILVDHGLMR-- 261

Query: 66  AKDEVRYVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
            KDE + V ++      +   +V   +         S P+       R        E  K
Sbjct: 262 -KDEAQQVVEMFREHYNLPLILVDASDRFIGALEGESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E+V   S        +        +   + + +  P     ++
Sbjct: 321 LGGADFLVQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKD 377

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 378 EVRLLGKELGLP 389


>gi|148558733|ref|YP_001257376.1| GMP synthase [Brucella ovis ATCC 25840]
 gi|226738395|sp|A5VU71|GUAA_BRUO2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148370018|gb|ABQ62890.1| GMP synthase [Brucella ovis ATCC 25840]
          Length = 520

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++ A+SGG DS    +  H  + D      + + I VDH L R  
Sbjct: 210 EQAVEAIRKQVGSGKVICALSGGVDSSVAALLAHEAVGD------QLTCILVDHGLMR-- 261

Query: 66  AKDEVRYVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
            KDE + V ++      +   +V   +         S P+       R        E  K
Sbjct: 262 -KDEAQQVVEMFREHYNLPLILVDASDRFIGALESESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E+V   S        +        +   + + +  P     ++
Sbjct: 321 LGGADFLVQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKD 377

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 378 EVRLLGKELGLP 389


>gi|62317722|ref|YP_223575.1| GMP synthase [Brucella abortus bv. 1 str. 9-941]
 gi|83269705|ref|YP_418996.1| GMP synthase [Brucella melitensis biovar Abortus 2308]
 gi|163844537|ref|YP_001622192.1| GMP synthase [Brucella suis ATCC 23445]
 gi|189022977|ref|YP_001932718.1| GMP synthase [Brucella abortus S19]
 gi|225628806|ref|ZP_03786840.1| GMP synthase, C-terminal domain-containing protein [Brucella ceti
           str. Cudo]
 gi|237817265|ref|ZP_04596257.1| GMP synthase, C-terminal domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|254691225|ref|ZP_05154479.1| GMP synthase [Brucella abortus bv. 6 str. 870]
 gi|254695471|ref|ZP_05157299.1| GMP synthase [Brucella abortus bv. 3 str. Tulya]
 gi|254699012|ref|ZP_05160840.1| GMP synthase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254699635|ref|ZP_05161463.1| GMP synthase [Brucella suis bv. 5 str. 513]
 gi|254706107|ref|ZP_05167935.1| GMP synthase [Brucella pinnipedialis M163/99/10]
 gi|254711593|ref|ZP_05173404.1| GMP synthase [Brucella pinnipedialis B2/94]
 gi|254712190|ref|ZP_05174001.1| GMP synthase [Brucella ceti M644/93/1]
 gi|254715260|ref|ZP_05177071.1| GMP synthase [Brucella ceti M13/05/1]
 gi|254720561|ref|ZP_05182372.1| GMP synthase [Brucella sp. 83/13]
 gi|254732459|ref|ZP_05191037.1| GMP synthase [Brucella abortus bv. 4 str. 292]
 gi|256015143|ref|YP_003105152.1| GMP synthase [Brucella microti CCM 4915]
 gi|256029771|ref|ZP_05443385.1| GMP synthase [Brucella pinnipedialis M292/94/1]
 gi|256059419|ref|ZP_05449621.1| GMP synthase [Brucella neotomae 5K33]
 gi|256157944|ref|ZP_05455862.1| GMP synthase [Brucella ceti M490/95/1]
 gi|256253097|ref|ZP_05458633.1| GMP synthase [Brucella ceti B1/94]
 gi|256256412|ref|ZP_05461948.1| GMP synthase [Brucella abortus bv. 9 str. C68]
 gi|260167121|ref|ZP_05753932.1| GMP synthase [Brucella sp. F5/99]
 gi|260544963|ref|ZP_05820784.1| GuaA protein [Brucella abortus NCTC 8038]
 gi|260756828|ref|ZP_05869176.1| GMP synthetase [Brucella abortus bv. 6 str. 870]
 gi|260760259|ref|ZP_05872607.1| GMP synthetase [Brucella abortus bv. 4 str. 292]
 gi|260763498|ref|ZP_05875830.1| GMP synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260882644|ref|ZP_05894258.1| GMP synthase [Brucella abortus bv. 9 str. C68]
 gi|261215857|ref|ZP_05930138.1| GMP synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|261216986|ref|ZP_05931267.1| GMP synthase [Brucella ceti M13/05/1]
 gi|261220200|ref|ZP_05934481.1| GMP synthase [Brucella ceti B1/94]
 gi|261313545|ref|ZP_05952742.1| GMP synthase [Brucella pinnipedialis M163/99/10]
 gi|261319216|ref|ZP_05958413.1| GMP synthase [Brucella pinnipedialis B2/94]
 gi|261319856|ref|ZP_05959053.1| GMP synthase [Brucella ceti M644/93/1]
 gi|261323385|ref|ZP_05962582.1| GMP synthase [Brucella neotomae 5K33]
 gi|261750099|ref|ZP_05993808.1| GMP synthase [Brucella suis bv. 5 str. 513]
 gi|261756521|ref|ZP_06000230.1| bifunctional GMP synthase/glutamine amidotransferase [Brucella sp.
           F5/99]
 gi|265985594|ref|ZP_06098329.1| GMP synthase [Brucella sp. 83/13]
 gi|265986783|ref|ZP_06099340.1| GMP synthase [Brucella pinnipedialis M292/94/1]
 gi|265996453|ref|ZP_06109010.1| GMP synthase [Brucella ceti M490/95/1]
 gi|294853356|ref|ZP_06794028.1| GMP synthase [Brucella sp. NVSL 07-0026]
 gi|297249772|ref|ZP_06933473.1| guaA, GMP synthase [Brucella abortus bv. 5 str. B3196]
 gi|306838072|ref|ZP_07470929.1| GMP synthase [Brucella sp. NF 2653]
 gi|306845655|ref|ZP_07478224.1| GMP synthase [Brucella sp. BO1]
 gi|75495459|sp|Q577H0|GUAA_BRUAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206796|sp|Q2YK38|GUAA_BRUA2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738393|sp|B2SBN5|GUAA_BRUA1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738396|sp|A9WY54|GUAA_BRUSI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|62197915|gb|AAX76214.1| GuaA, GMP synthase [Brucella abortus bv. 1 str. 9-941]
 gi|82939979|emb|CAJ13008.1| Glutamine amidotransferase class-I:Carbamoyl-phosphate synthase,
           GATase domain:GMP synthase, C terminal:GMP synthase,
           N-termi [Brucella melitensis biovar Abortus 2308]
 gi|163675260|gb|ABY39370.1| GMP synthase, C-terminal domain [Brucella suis ATCC 23445]
 gi|189021551|gb|ACD74272.1| GuaA, GMP synthase [Brucella abortus S19]
 gi|225616652|gb|EEH13700.1| GMP synthase, C-terminal domain-containing protein [Brucella ceti
           str. Cudo]
 gi|237788078|gb|EEP62294.1| GMP synthase, C-terminal domain-containing protein [Brucella
           abortus str. 2308 A]
 gi|255997803|gb|ACU49490.1| GMP synthase [Brucella microti CCM 4915]
 gi|260098234|gb|EEW82108.1| GuaA protein [Brucella abortus NCTC 8038]
 gi|260670577|gb|EEX57517.1| GMP synthetase [Brucella abortus bv. 4 str. 292]
 gi|260673919|gb|EEX60740.1| GMP synthetase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260676936|gb|EEX63757.1| GMP synthetase [Brucella abortus bv. 6 str. 870]
 gi|260872172|gb|EEX79241.1| GMP synthase [Brucella abortus bv. 9 str. C68]
 gi|260917464|gb|EEX84325.1| GMP synthetase [Brucella abortus bv. 3 str. Tulya]
 gi|260918784|gb|EEX85437.1| GMP synthase [Brucella ceti B1/94]
 gi|260922075|gb|EEX88643.1| GMP synthase [Brucella ceti M13/05/1]
 gi|261292546|gb|EEX96042.1| GMP synthase [Brucella ceti M644/93/1]
 gi|261298439|gb|EEY01936.1| GMP synthase [Brucella pinnipedialis B2/94]
 gi|261299365|gb|EEY02862.1| GMP synthase [Brucella neotomae 5K33]
 gi|261302571|gb|EEY06068.1| GMP synthase [Brucella pinnipedialis M163/99/10]
 gi|261736505|gb|EEY24501.1| bifunctional GMP synthase/glutamine amidotransferase [Brucella sp.
           F5/99]
 gi|261739852|gb|EEY27778.1| GMP synthase [Brucella suis bv. 5 str. 513]
 gi|262550750|gb|EEZ06911.1| GMP synthase [Brucella ceti M490/95/1]
 gi|264658980|gb|EEZ29241.1| GMP synthase [Brucella pinnipedialis M292/94/1]
 gi|264664186|gb|EEZ34447.1| GMP synthase [Brucella sp. 83/13]
 gi|294819011|gb|EFG36011.1| GMP synthase [Brucella sp. NVSL 07-0026]
 gi|297173641|gb|EFH33005.1| guaA, GMP synthase [Brucella abortus bv. 5 str. B3196]
 gi|306273976|gb|EFM55803.1| GMP synthase [Brucella sp. BO1]
 gi|306406809|gb|EFM63031.1| GMP synthase [Brucella sp. NF 2653]
          Length = 520

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++ A+SGG DS    +  H  + D      + + I VDH L R  
Sbjct: 210 EQAVEAIRKQVGSGKVICALSGGVDSSVAALLAHEAVGD------QLTCILVDHGLMR-- 261

Query: 66  AKDEVRYVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
            KDE + V ++      +   +V   +         S P+       R        E  K
Sbjct: 262 -KDEAQQVVEMFREHYNLPLILVDASDRFIGALEGESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E+V   S        +        +   + + +  P     ++
Sbjct: 321 LGGADFLVQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKD 377

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 378 EVRLLGKELGLP 389


>gi|85713551|ref|ZP_01044541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter sp. Nb-311A]
 gi|85699455|gb|EAQ37322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter sp. Nb-311A]
          Length = 433

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 44/209 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L S   D     ++      DH     R+    A
Sbjct: 40  LEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLY----DHGAATHRKGACCA 95

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++    +V  RL + H V+ +++   +T +   A                R  ++  +
Sbjct: 96  GQDIHDARNVAERLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRLVKFRDL 155

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------LYDL 161
              A+ + A  + T H         Y+ S+R        L                  + 
Sbjct: 156 LATARELGAAALATGH---------YVASRRSPGGSRTLLCAADADRDQSYFLFATTREQ 206

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCE 190
             ++  P     +   R    +  +   +
Sbjct: 207 LDFLRFPLGDMTKAQTRELARRFGLPVAD 235


>gi|291298621|ref|YP_003509899.1| GMP synthase large subunit [Stackebrandtia nassauensis DSM 44728]
 gi|290567841|gb|ADD40806.1| GMP synthase, large subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 516

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 67/198 (33%), Gaps = 28/198 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+     +R+ V    +L  +SGG DS      +H  + D      + + + VDH  L
Sbjct: 201 SVIDEQVEAIRAQVGDKRVLCGLSGGVDSSVAAALVHRAVGD------QLTCVFVDHGLL 254

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           R    ++V    D  +   I   VV  +            P++      RE         
Sbjct: 255 RSGEAEQVE--KDYVAVTGINLKVVDAQETFLKELSGVVDPESKRKIIGREF-IRAFENA 311

Query: 114 AKTINA----TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A+ I+A      ++    + D +E+             +        +  DL   +  P 
Sbjct: 312 AREIDAEGPIEYLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLKFTLVEPL 366

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R+   +  + 
Sbjct: 367 RTLFKDEVRAIGTELGLP 384


>gi|323141405|ref|ZP_08076296.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414154|gb|EFY04982.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain
           [Phascolarctobacterium sp. YIT 12067]
          Length = 517

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 20/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     ++  +    +L A+SGG DS      L   +        + + + VDH  L
Sbjct: 203 SFVEQTVAELKERIGDGKVLCALSGGVDSSVCAAMLAKAIGK------QLTCVFVDHGLL 256

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHA 114
           R+  ++EV  V     +  I    V  +           A E +          +  E A
Sbjct: 257 RKNEREEVCAVFGEGGQFDINFICVDARERFYSKLAGVTAPEGKRKIIGEEFIRVFEEEA 316

Query: 115 KTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           K I A   +     + D +E+     +    +    + G+ D + +     I  P     
Sbjct: 317 KKIGAVDYLAQGTIYPDVVESGL-GGESATIKSHHNVGGLPDFVDFK---EIVEPLRDLF 372

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 373 KDEVRQSGRELGLP 386


>gi|296450964|ref|ZP_06892711.1| PP-loop family protein [Clostridium difficile NAP08]
 gi|296879070|ref|ZP_06903066.1| PP-loop family protein [Clostridium difficile NAP07]
 gi|296260182|gb|EFH07030.1| PP-loop family protein [Clostridium difficile NAP08]
 gi|296429943|gb|EFH15794.1| PP-loop family protein [Clostridium difficile NAP07]
          Length = 272

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 35/182 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++VA SGG DS  LL      L +         A+++   +   +  E+         
Sbjct: 23  GSVVVAYSGGVDSNFLLKVAKDTLGE------NVVAVTIHAMMH--SSREIEEAKQYTQN 74

Query: 80  LRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + H +++ +N       +         ++  ++ I E AK  N   I+     DD   
Sbjct: 75  FGVKHIILNIENFDLKEFKENGIDRCYHCKKYIFSKIKEVAKEHNIKYIVDGTNIDDL-- 132

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCED 191
                      +   GL  + +       L +  P      ++E+IRS      +     
Sbjct: 133 ----------GDYRPGLKALSE-------LGVISPLKDSGLKKEEIRSLSKILGLKTFNK 175

Query: 192 PS 193
           PS
Sbjct: 176 PS 177


>gi|255655798|ref|ZP_05401207.1| hypothetical protein CdifQCD-2_08869 [Clostridium difficile
           QCD-23m63]
          Length = 267

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 35/182 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++VA SGG DS  LL      L +         A+++   +   +  E+         
Sbjct: 18  GSVVVAYSGGVDSNFLLKVAKDTLGE------NVVAVTIHAMMH--SSREIEEAKQYTQN 69

Query: 80  LRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
             + H +++ +N       +         ++  ++ I E AK  N   I+     DD   
Sbjct: 70  FGVKHIILNIENFDLKEFKENGIDRCYHCKKYIFSKIKEVAKEHNIKYIVDGTNIDDL-- 127

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCED 191
                      +   GL  + +       L +  P      ++E+IRS      +     
Sbjct: 128 ----------GDYRPGLKALSE-------LGVISPLKDSGLKKEEIRSLSKILGLKTFNK 170

Query: 192 PS 193
           PS
Sbjct: 171 PS 172


>gi|46199489|ref|YP_005156.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermus thermophilus HB27]
 gi|50400348|sp|Q72IE5|GUAA_THET2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46197115|gb|AAS81529.1| GMP synthase [Thermus thermophilus HB27]
          Length = 503

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E +   VR       +L+AVSGG DS  L + L     D         A+ VDH  LR 
Sbjct: 196 LEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHL-------AVFVDHGLLRL 248

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
             ++E   V      L +   VV  K            P+       RE   A      +
Sbjct: 249 GEREE---VEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARE 305

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +     + D +E+        +    +        +  DL   +  PF    ++
Sbjct: 306 RGPFRFLAQGTLYPDVIES-----AGGHGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKD 360

Query: 176 DIRSFLLQRNIS 187
           ++R   L   + 
Sbjct: 361 EVRELALLLGLP 372


>gi|255975449|ref|ZP_05426035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T2]
 gi|256961498|ref|ZP_05565669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Merz96]
 gi|293385188|ref|ZP_06631008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis R712]
 gi|293388180|ref|ZP_06632702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis S613]
 gi|307277736|ref|ZP_07558822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0860]
 gi|312908274|ref|ZP_07767238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 512]
 gi|312910654|ref|ZP_07769495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 516]
 gi|255968321|gb|EET98943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T2]
 gi|256951994|gb|EEU68626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Merz96]
 gi|291077561|gb|EFE14925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis R712]
 gi|291082420|gb|EFE19383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis S613]
 gi|306505615|gb|EFM74799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0860]
 gi|310625688|gb|EFQ08971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 512]
 gi|311289030|gb|EFQ67586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DAPTO 516]
          Length = 374

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 63/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           + V+ V  ++ I +  V+++             E R                +    ++A
Sbjct: 57  KDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+ET        +R   +  ++   LS +  T L         P
Sbjct: 117 MQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQTQLAKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGGMEKSEVRAIAERAGLA 189


>gi|171914097|ref|ZP_02929567.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 506

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 33/191 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  VSGG DS  L + LH          +K   + VDH  LR+   +E  
Sbjct: 206 IRQEVGGREVICGVSGGVDSTVLAVLLHK-------AGVKQRCLFVDHGLLRKNESEE-- 256

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH------AKTINATLIMTA 125
            V      + +   VV  + +           EA+  +I             +  L+   
Sbjct: 257 -VQAQFKEVGVPIEVVDARETFLGALKGVTDPEAKRKIIGNLFLDVFFGAADHIELMAQG 315

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMC-------DTILYDLNLWISRPFLRCRREDIR 178
             + D +E          A  G   S +          +       +  P     ++++R
Sbjct: 316 TLYPDVIE---------SATSGSIASKIKTHHNRVDRVLELKDQGRVIEPLAELFKDEVR 366

Query: 179 SFLLQRNISWC 189
           +      I   
Sbjct: 367 ALGEALGIPHR 377


>gi|323449292|gb|EGB05181.1| hypothetical protein AURANDRAFT_38620 [Aureococcus anophagefferens]
          Length = 946

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 76  VCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
               L + +      ++ + N+   + L +     +   +   A      ++  A   DD
Sbjct: 752 YVKALGVRYFYLKDHIIDYANTVKPSSLCSYCARMKRGALYTCASREGYNILALAQHLDD 811

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
             E+  M +  +       L  M    + D  + + RP +  R   ++SF ++  +   
Sbjct: 812 LAESFIMGAFHNGQ-----LRTMRSKYIADRGVTVIRPLVYAREHMMKSFAMEAQLPII 865


>gi|114706565|ref|ZP_01439466.1| GMP synthetase [Fulvimarina pelagi HTCC2506]
 gi|114537957|gb|EAU41080.1| GMP synthetase [Fulvimarina pelagi HTCC2506]
          Length = 518

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + I VDH  LR    +EV 
Sbjct: 214 IREKVGDGKVICGLSGGVDSSVAAVLIHEAIGD------QLTCIFVDHGLLRLNEAEEV- 266

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
            VS       I    V  +++          P+       R       +E  K   A  +
Sbjct: 267 -VSMFRDHYNIPLVHVQAEDTFVDALEGEMDPEVKRKTIGRLFIETFEAEAKKLGGADFL 325

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 326 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRILGK 382

Query: 183 QRNIS 187
           +  + 
Sbjct: 383 ELGLP 387


>gi|152993480|ref|YP_001359201.1| GMP synthase [Sulfurovum sp. NBC37-1]
 gi|226739756|sp|A6QBI5|GUAA_SULNB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|151425341|dbj|BAF72844.1| GMP synthase (glutamine-hydrolyzing) [Sulfurovum sp. NBC37-1]
          Length = 513

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L  VSGG DS  +   LH  L      K +   + VD   LR   KDE  
Sbjct: 210 IRAQVGEKKVLCGVSGGVDSSVVAAMLHEAL-----PKEQLICVFVDQGLLR---KDEAE 261

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
            V D+   L I    +  K            P+    A   +       E  K  + + +
Sbjct: 262 QVQDMFKLLDIPLITIDAKKEFMEALAGVTDPEQKRKAIGEKFIEVFDKEAGKHTDVSFL 321

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ D + ++    +  P     ++++R   L
Sbjct: 322 AQGTLYTDVIESVSVKGPSKTIKSHHNVGGLPDWMTFE----LVEPLREIFKDEVRKLGL 377

Query: 183 QRNIS 187
           +  + 
Sbjct: 378 ELGLP 382


>gi|154173946|ref|YP_001408829.1| hypothetical protein CCV52592_1718 [Campylobacter curvus 525.92]
 gi|112803690|gb|EAU01034.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 257

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 33/179 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCS 78
            ++ VA SGG DS  L    + VL +++       AI++        +  E+    + C 
Sbjct: 15  GNLAVAFSGGVDSSLLAKLANDVLGEKA------VAITI---KSPYMSAREIDEAVEFCK 65

Query: 79  RLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              I H ++        +          +++ +A + + A  +  T I      DD  E 
Sbjct: 66  IYNIKHEILELGILEDITDNPKDRCYICKKSVFAQLMKRACELGFTNIADGTNADDLGE- 124

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
                                 +     L +  P     + DIR    + N+   + PS
Sbjct: 125 ------------------YRPGLKAKDELGVLSPLKNLSKVDIRELSRELNLPTHDKPS 165


>gi|154496648|ref|ZP_02035344.1| hypothetical protein BACCAP_00940 [Bacteroides capillosus ATCC
           29799]
 gi|150273900|gb|EDN01000.1| hypothetical protein BACCAP_00940 [Bacteroides capillosus ATCC
           29799]
          Length = 513

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 34/190 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS  +   L   + +      + + + VDH L R+   DEV 
Sbjct: 212 IREKVGSGKVLLALSGGVDSSVVAALLAEAVGN------QLTCVFVDHGLMRKDEGDEVE 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSK--PQTGLMAAAREAR------YALISEHAKTINA-TLI 122
                  R  I    V  ++       G+    R+ +        +  E AK I A   +
Sbjct: 266 --QAFA-RWDINFVRVDAESRFLLKLAGVSEPERKRKIIGEEFIRVFEEEAKKIGAVDFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-----GLSGMCDTILYDLNLWISRPFLRCRREDI 177
                + D +E+          +  +      + G+ D + +     I  P     ++++
Sbjct: 323 AQGTIYPDVIES-------GAGDAAVIKSHHNVGGLPDYVDFK---EIIEPLRLLFKDEV 372

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 373 RQLGRELGLP 382


>gi|49474995|ref|YP_033036.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bartonella henselae str. Houston-1]
 gi|81648415|sp|Q6G5J3|GUAA_BARHE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49237800|emb|CAF26994.1| GMP synthetase [Bartonella henselae str. Houston-1]
          Length = 518

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V  + ++  +SGG DS  + + LH  + D      + + I VDH L R+    EV 
Sbjct: 215 IRQKVGKSRVICGLSGGVDSSVVAVLLHEAIGD------QLTCILVDHGLMRKNEAQEVL 268

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            +        I    V+  N           P+       R        E  K   A  +
Sbjct: 269 TLFR--DHYNIKLIHVNAANMFLNALEGEIDPEKKRKTIGRLFIEVFEEETKKIGGAEFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E++            +        +   +N+ +  P     ++++RS   
Sbjct: 327 AQGTLYPDVIESI----SAIGKSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRSLGK 382

Query: 183 QRNIS 187
           +  + 
Sbjct: 383 ELGLP 387


>gi|144899505|emb|CAM76369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 360

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 32/197 (16%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET---AKDE 69
           +     I+VA+SGG DS      L     D     ++      DH     R     A  +
Sbjct: 1   MTAKGRIVVAMSGGVDSSATAALLKEQGWDVVGVTLQLY----DHGQAVCRPNTCCAGKD 56

Query: 70  VRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEH 113
           +     V   L I H V+    ++          +  R              ++  +   
Sbjct: 57  IHDARTVADVLGIPHYVMDMESTFHADVVDKFAESYIRGETPIPCVLCNQTVKFRDLFSI 116

Query: 114 AKTINATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           A+ + A  + T H     D      M   +     G   S    +   +   ++  P   
Sbjct: 117 ARDLGADALATGHYVQRQDSANGAIM--LKGADP-GRDQSYFLFSTTREQLEFLRFPLGG 173

Query: 172 C-RREDIRSFLLQRNIS 187
              +++ R+   + N+ 
Sbjct: 174 FLSKDETRAIAARYNLP 190


>gi|325847124|ref|ZP_08169950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481096|gb|EGC84141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 369

 Score = 60.3 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 38/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-----DEVRY--V 73
            ++V VSGG DS    + L     D S   +K           E  +      EV Y   
Sbjct: 10  KVIVGVSGGVDSSVAALLLKEEGYDVSGIFMK--------NWDEEDENGVCTAEVDYEDA 61

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             VC+++ I +  ++++                  R          E ++    ++AK +
Sbjct: 62  VKVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDL 121

Query: 118 NATLIMTAHTFD-DQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H    D+   ET  +R      ++   LS +    + D    +  P     +
Sbjct: 122 GADYLATGHYARVDRSSGETKMLRGIDSNKDQTYFLSQLSQDQIKD----VLFPVGNLDK 177

Query: 175 EDIRSFLLQRNIS 187
           +++R    + N++
Sbjct: 178 KEVRKIAKENNLA 190


>gi|291528653|emb|CBK94239.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Eubacterium rectale M104/1]
          Length = 524

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 20/185 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS  L   L   +        + + + VDH  LR+   DEV 
Sbjct: 209 IREQVGDGKVLLALSGGVDSSVLAALLAKAIGK------QLTCVFVDHGLLRKNEGDEVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATLI 122
            V        I    V+ +        G+    R+ +        +  E AK I     +
Sbjct: 263 GVFGKGGSFDINFVRVNAQERYYSKLAGVTEPERKRKIIGEEFIRVFEEEAKKIGKVDFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+     +    +    + G+ + + +     I  P     ++++R   L
Sbjct: 323 AQGTIYPDVVESGL-GGESAVIKSHHNVGGLPEHVDFKD---IVEPLRNLFKDEVRKVGL 378

Query: 183 QRNIS 187
           +  + 
Sbjct: 379 ELGLP 383


>gi|291523877|emb|CBK89464.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Eubacterium rectale DSM 17629]
          Length = 524

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 20/185 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS  L   L   +        + + + VDH  LR+   DEV 
Sbjct: 209 IREQVGDGKVLLALSGGVDSSVLAALLAKAIGK------QLTCVFVDHGLLRKNEGDEVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATLI 122
            V        I    V+ +        G+    R+ +        +  E AK I     +
Sbjct: 263 GVFGKGGSFDINFVRVNAQERYYSKLAGVTEPERKRKIIGEEFIRVFEEEAKKIGKVDFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+     +    +    + G+ + + +     I  P     ++++R   L
Sbjct: 323 AQGTIYPDVVESGL-GGESAVIKSHHNVGGLPEHVDFKD---IVEPLRNLFKDEVRKVGL 378

Query: 183 QRNIS 187
           +  + 
Sbjct: 379 ELGLP 383


>gi|312143962|ref|YP_003995408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904613|gb|ADQ15054.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halanaerobium sp. 'sapolanicus']
          Length = 357

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 40/195 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             +++A+SGG DS      L     +   G +       D+   E A D   +       
Sbjct: 2   KKVMIAMSGGVDSSVAAALLKEKGYEVIGGTMHIFP---DY---EEATDREDHCCSYSAI 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHA 114
                V  +L I H V + K+   +  +       + AR          + ++  +   A
Sbjct: 56  RDAKRVAQKLEIPHFVFNLKDEFQEKVIDYFVYEYSKARTPNPCVMCNKKIKFDALLRKA 115

Query: 115 KTINATLIMTAHTFDDQLET----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + I    I T H    ++E       ++  RD ++    +  + +       L+   P  
Sbjct: 116 REIGCDYIATGHYS--KIEKNNGRYLLKKGRDESKDQSYMLYVLNQEQLSRALF---PLG 170

Query: 171 RCRREDIRSFLLQRN 185
              +++IR    +  
Sbjct: 171 DFTKQEIRQKAKELG 185


>gi|291458778|ref|ZP_06598168.1| GMP synthase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418695|gb|EFE92414.1| GMP synthase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 513

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 21/186 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V    +L+A+SGG DS      L   +        + S + VDH  LR+   DEV
Sbjct: 208 AIREKVGGGKVLLALSGGVDSSVAATLLSKAIGR------QLSCVFVDHGLLRKYEGDEV 261

Query: 71  RYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREA--RY-ALISEHAKTINA-TL 121
             V     +  +    V+      +  K         R    R+  +  + AK I A   
Sbjct: 262 EAVFGSTGKYDLNFIRVNAGPLYLEKLKGVEEPEQKRRIIGERFIRIFEQEAKKIGAVDF 321

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+         +   +G  G+   I +     I  P     ++++R   
Sbjct: 322 LAQGTIYADVVESGLGNGAVIKSHHNVG--GLPKNIEFRG---IIEPLRDLFKDEVRRVG 376

Query: 182 LQRNIS 187
           L+  + 
Sbjct: 377 LELGLP 382


>gi|261856534|ref|YP_003263817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothiobacillus neapolitanus c2]
 gi|261837003|gb|ACX96770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothiobacillus neapolitanus c2]
          Length = 377

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 46/201 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD- 75
                ++V +SGG DS    + L           +K               D   Y +  
Sbjct: 9   PQDTRVIVGLSGGVDSSVAALRLIEAGYQVEGLFMKNW----------EGDDNDEYCAAK 58

Query: 76  --------VCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
                   V  RL I    V+     W            A           RE ++    
Sbjct: 59  ADMLDALSVADRLGIEFHFVNFAQDYWDRVFAHFLDEYRAGRTPNPDILCNREIKFRAFL 118

Query: 112 EHAKTINATLIMTAH-----TF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           +HA+T+ A  I T H         DD  ET  ++      ++   L  +    L      
Sbjct: 119 DHARTLGADYIATGHYARVQHALPDDSGETCLLKGLDANKDQSYFLHALSREQLASA--- 175

Query: 165 ISRPFLRCRREDIRSFLLQRN 185
              P     + ++R    Q  
Sbjct: 176 -LFPIGEMEKPEVRRIAEQAG 195


>gi|297624482|ref|YP_003705916.1| GMP synthase large subunit [Truepera radiovictrix DSM 17093]
 gi|297165662|gb|ADI15373.1| GMP synthase, large subunit [Truepera radiovictrix DSM 17093]
          Length = 525

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 65/197 (32%), Gaps = 28/197 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E +   VR  V    +L+A+SGG DS  L + L+  + +R       +A+ VDH  LR 
Sbjct: 213 LEVMTREVRERVGDERVLLAISGGVDSSTLGLLLNRAIGER------LTAVFVDHGLLRA 266

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
               E   V      + +  +VV             A  E +  +I      +   ++  
Sbjct: 267 G---EAEEVERALRGVGVNLTVVDAAERFLGALTGVADPEEKRKIIGREFIEVFNGVV-- 321

Query: 125 AHTFDDQLE----------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLR 171
               D Q E          T+Y          G            +  DL   +  PF  
Sbjct: 322 ---RDKQAEVGHIRFLAQGTLYPDVIESSGGHGAANIKSHHNVGGLPEDLRFELLEPFRT 378

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R       +  
Sbjct: 379 LFKDEVRELATLLGLPP 395


>gi|167040842|ref|YP_001663827.1| ExsB family protein [Thermoanaerobacter sp. X514]
 gi|300914879|ref|ZP_07132195.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307723887|ref|YP_003903638.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X513]
 gi|166855082|gb|ABY93491.1| ExsB family protein [Thermoanaerobacter sp. X514]
 gi|300889814|gb|EFK84960.1| PP-loop domain protein [Thermoanaerobacter sp. X561]
 gi|307580948|gb|ADN54347.1| PP-loop domain protein [Thermoanaerobacter sp. X513]
          Length = 286

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 60/190 (31%), Gaps = 36/190 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +R     L+   + L+A SGG DS  L    + VL +R       S +         +
Sbjct: 15  EKLRKLQEYLLKLDNALIAFSGGVDSTFLAKVSYDVLGNRVLAVTATSPMH------PKS 68

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN-------SKPQTGLMAAAREARYALISEHAKTINA 119
             E++   ++  ++ I H VV + +        K         +   ++     A+    
Sbjct: 69  --ELKEAVELAKKIGIPHLVVEFNDILEIEEFRKNPLNRCYICKSNLFSRFKAIAEEKGF 126

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDI 177
             I+     DD                   +S           L I  P L    ++E+I
Sbjct: 127 KYILEGTNADD-------------------VSDFRPGRRALKELGILSPLLECGIKKEEI 167

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 168 RILSKELGLP 177


>gi|159795613|pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus In Complex With Xmp
 gi|159795614|pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus In Complex With Xmp
 gi|159795615|pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus In Complex With Xmp
 gi|159795616|pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
           Thermophilus In Complex With Xmp
          Length = 503

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E +   VR       +L+AVSGG DS  L + L     D         A+ VDH  LR 
Sbjct: 196 LEELLREVRERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHL-------AVFVDHGLLRL 248

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
             ++E   V      L +   VV  K            P+       RE   A      +
Sbjct: 249 GEREE---VEGALRALGVNLLVVDAKERFLKALKGVEDPEEKRKIIGREFVAAFSQVARE 305

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +     + D +E+        +    +        +  DL   +  PF    ++
Sbjct: 306 RGPFRFLAQGTLYPDVIES-----AGGHGAAKIKSHHNVGGLPEDLEFELLEPFRLLFKD 360

Query: 176 DIRSFLLQRNIS 187
           ++R   L   + 
Sbjct: 361 EVRELALLLGLP 372


>gi|332296049|ref|YP_004437972.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796]
 gi|332179152|gb|AEE14841.1| PP-loop domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 298

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 33/215 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR-- 79
           +L+AVSGG DS+GL   L  +            A+ +     E ++  +  V     +  
Sbjct: 50  LLLAVSGGKDSLGLWFILKGL-------GFNVKALHIIMPFGEYSEKSLEIVKSCAKKLD 102

Query: 80  -----------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
                      L I          KP           RY ++S +A   +   I+T H  
Sbjct: 103 EKPIYIEANNYLDIDFFKALKIYKKPICSFCGK--IKRY-ILSTYASRNSYNTIVTGHNL 159

Query: 129 DDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---SRPFLRCRREDIRSFLLQR 184
           DD  ET   + +   +  + +         + + N ++    +P +R   E++  F    
Sbjct: 160 DD--ETAFLLGNLLHWHVEYL----KKQGPILEGNQFMPKKVKPLIRITDEEMSFFAKVS 213

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
            I +  +        + V  +  + +ID +    K
Sbjct: 214 KIEYVVERCPYSKEAKSVFFKNILNEIDKYMPGTK 248


>gi|256827441|ref|YP_003151400.1| GMP synthase (glutamine-hydrolyzing) [Cryptobacterium curtum DSM
           15641]
 gi|256583584|gb|ACU94718.1| GMP synthase (glutamine-hydrolyzing) [Cryptobacterium curtum DSM
           15641]
          Length = 530

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 85/280 (30%), Gaps = 44/280 (15%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R+ V    +++A+SGG DS  +       +        + + + V+H  LR+   ++V
Sbjct: 213 AIRAQVGSDRMILALSGGVDSSVVAALCAKAVGK------QLTCVFVNHGLLRKGEPEQV 266

Query: 71  RYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
             V     +  I    V  +            P+        +      +   +T     
Sbjct: 267 EEV--FTKQFDIDFVHVHAEERYAKLLAGVVDPEQKRRIIGTQFWKEFFAVAQETGGIKY 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIRS 179
           +     + D +E+      R    K   +    + I +   +   +  P     ++++R+
Sbjct: 325 LAQGTIYPDIIES----GARKTGGKASTIKSHHNLIPFPEGVRFDLIEPLDHFFKDEVRA 380

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAM 236
                 +    D                V         L ++    +   ++ +      
Sbjct: 381 LGEALGLP---D--------------HIVHRQPFPGPGLAIRIIGAVDAEKLVLLKDADA 423

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICG 276
           ++ + L  +   +I  + +  +  +   ++ +       G
Sbjct: 424 IVREELDAYNEWLIEQTGERNSEHAAWQYFAVLPDIKSVG 463


>gi|229826315|ref|ZP_04452384.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC
           49176]
 gi|229789185|gb|EEP25299.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC
           49176]
          Length = 360

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 24/128 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAI-SVDHC-LRETAKDEVRYVS 74
             ++V +SGG DS      L     +     +      A+ +V+   L   AK++ R V+
Sbjct: 3   KKVVVGLSGGVDSSVAAYLLKKQGYEVYGVTMDIWTEGAVDTVNGGCLGSQAKEDARKVA 62

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
           +    L I + VV  +    +  +   A                R  ++  + + A+   
Sbjct: 63  ET---LDIPYKVVDVRGKFRENVMNYFADSYKNGETPNPCTLCNRRVKWEALFKGAELFG 119

Query: 119 ATLIMTAH 126
           A  + T H
Sbjct: 120 AEYVATGH 127


>gi|312136736|ref|YP_004004073.1| gmp synthase (glutamine-hydrolyzing) [Methanothermus fervidus DSM
           2088]
 gi|311224455|gb|ADP77311.1| GMP synthase (glutamine-hydrolyzing) [Methanothermus fervidus DSM
           2088]
          Length = 308

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 32/198 (16%)

Query: 1   MFL--SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     IE     ++  V  +  ++A+SGG DS          L DR        A+ V
Sbjct: 1   MFKPQEFIEEAVENIKKTVGKSKAIIALSGGVDSSVTAFLAKKALGDR------LIAVFV 54

Query: 59  DHC-LRETAKDEVR-YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------AL 109
           +H  LRE    E+R +  D   +L   +   S +      G+     + R         +
Sbjct: 55  NHGLLREGEAKEIRKFFKD---KLNFRYVDASKRFLDALKGVKDP-EKKRKIISKVFIEI 110

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E A+  +A  ++      D +E+           +G   S     +   L L +  P 
Sbjct: 111 FEEVAREEDAKYLLQGTIAPDWIES-----------RGKIKSHHNVVLPSGLVLKVVEPL 159

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 160 RDLYKDEVRILAKELGLP 177


>gi|312874903|ref|ZP_07734922.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089648|gb|EFQ48073.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2053A-b]
          Length = 517

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREAR------YALISEHAKTI-NA 119
            V + +   L I  +++    ++       G+    R+ +        + +E A+ + + 
Sbjct: 267 QVMAALNKELGI--NIIKVDAAERFLSKLAGVTEPERKRKIIGKEFIEVFNEEAQKLKDI 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  D++  +  P  +  ++++R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRV 378

Query: 180 FLLQRNISW 188
              +  +  
Sbjct: 379 LGEKLGLPH 387


>gi|309808435|ref|ZP_07702334.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|312873911|ref|ZP_07733949.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2052A-d]
 gi|325913133|ref|ZP_08175503.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners UPII 60-B]
 gi|308168263|gb|EFO70382.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 01V1-a]
 gi|311090587|gb|EFQ48993.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2052A-d]
 gi|325477554|gb|EGC80696.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners UPII 60-B]
          Length = 517

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREAR------YALISEHAKTI-NA 119
            V + +   L I  +++    ++       G+    R+ +        + +E A+ + + 
Sbjct: 267 QVMAALNKELGI--NIIKVDAAERFLSKLAGVTEPERKRKIIGKEFIEVFNEEAQKLKDI 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  D++  +  P  +  ++++R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRV 378

Query: 180 FLLQRNISW 188
              +  +  
Sbjct: 379 LGEKLGLPH 387


>gi|309804587|ref|ZP_07698652.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165979|gb|EFO68197.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 09V1-c]
          Length = 512

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 211 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 261

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREAR------YALISEHAKTI-NA 119
            V + +   L I  +++    ++       G+    R+ +        + +E A+ + + 
Sbjct: 262 QVMAALNKELGI--NIIKVDAAERFLSKLAGVTEPERKRKIIGKEFIEVFNEEAQKLKDI 319

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  D++  +  P  +  ++++R 
Sbjct: 320 DFLAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRV 373

Query: 180 FLLQRNISW 188
              +  +  
Sbjct: 374 LGEKLGLPH 382


>gi|309803793|ref|ZP_07697879.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|312872559|ref|ZP_07732627.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2062A-h1]
 gi|308164202|gb|EFO66463.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 11V1-d]
 gi|311091921|gb|EFQ50297.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 517

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 70/189 (37%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREAR------YALISEHAKTI-NA 119
            V + +   L I  +++    ++       G+    R+ +        + +E A+ + + 
Sbjct: 267 QVMAALNKELGI--NIIKVDAAERFLSKLAGVTEPERKRKIIGKEFIEVFNEEAQKLKDI 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  D++  +  P  +  ++++R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRV 378

Query: 180 FLLQRNISW 188
              +  +  
Sbjct: 379 LGEKLGLPH 387


>gi|328954894|ref|YP_004372227.1| GMP synthase (glutamine-hydrolyzing) [Coriobacterium glomerans PW2]
 gi|328455218|gb|AEB06412.1| GMP synthase (glutamine-hydrolyzing) [Coriobacterium glomerans PW2]
          Length = 526

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 26/197 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  V  A +++A+SGG DS  +       +        + + + ++H  L
Sbjct: 201 SIVEAKVAEIRERVGDARVILALSGGVDSSVVAALCARAI------GPRLTCVFINHGLL 254

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAAR----EARYALISE 112
           R+    E   V +   S+  +    V  +                 R    +      + 
Sbjct: 255 RKN---EPEQVEEIFSSQFDVDFVHVHAEERYAALLAGVVDPEEKRRIIGTQFWEEFFAV 311

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISRPFL 170
             +T     +     + D +E+      R    +   +    + I +   +   +  P  
Sbjct: 312 AQRTGGVRFLAQGTIYPDIIES----GARKTGGRAATIKSHHNLIPFPEGVSFDLIEPLD 367

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   LQ  + 
Sbjct: 368 HFFKDEVRELGLQLGLP 384


>gi|325290391|ref|YP_004266572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965792|gb|ADY56571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 352

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
           A + VA+SGG DS    + L     D          + V   +    +D+ +        
Sbjct: 2   AKVFVAMSGGVDSSVAALLLKREGYD---------VVGVTMQIWPQPEDKEKACCSLDAV 52

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RY---ALISEHA 114
                V  +L I H V+++++   +  +    RE              RY    L  + A
Sbjct: 53  NDARRVAWKLGIPHYVLNFRDDFEEKVIRYFCREYLAGRTPNPCIACNRYLKFDLFLQKA 112

Query: 115 KTINATLIMTAH----TFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             + A  I T H      ++Q E   +R       ++   L  +      D       P 
Sbjct: 113 LAMGADYISTGHYARIRRNEQTERYELRKGLDQTKDQSYALYNLQQ----DQLQHTLFPL 168

Query: 170 LRCRREDIRSFLLQRNIS 187
              ++E+ R    +  + 
Sbjct: 169 GTYKKEETRKLAQEGGLP 186


>gi|269303316|gb|ACZ33416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 361

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 39/200 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-------DEVRYVS 74
           ++VA+SGG DS  +        + +  G              E ++        +   V 
Sbjct: 5   VIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMK-------NWEEDSEGGLCSSTKDYEDVE 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
            VC +L I +  VS+     +                       RE ++ L+ +  + + 
Sbjct: 58  RVCLQLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELG 117

Query: 119 ATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              + T H      +  ET  +R      ++   LSG   + L++    +  P     + 
Sbjct: 118 GDYLATGHYCRLNTELQETQLLRGCDPQKDQSYFLSGTPKSALHN----VLFPLGEMNKT 173

Query: 176 DIRSFLLQRNISWCE--DPS 193
           ++R+   Q  +   E  D +
Sbjct: 174 EVRAIAAQAALPTAEKKDST 193


>gi|49473838|ref|YP_031880.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bartonella quintana str. Toulouse]
 gi|81647394|sp|Q6G197|GUAA_BARQU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49239341|emb|CAF25674.1| GMP synthase [Bartonella quintana str. Toulouse]
          Length = 518

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 63/185 (34%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V  + ++  +SGG DS  + + LH  + D      + + I VDH L R+   +EV 
Sbjct: 215 IRKKVGKSRVICGLSGGVDSSVVAVLLHEAIGD------QLTCILVDHGLMRKNEAEEVL 268

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            +        I    V+  N         + P+       R        E  K      +
Sbjct: 269 KLFR--DHYNIELIHVNAANIFLNALEGETDPEKKRKTIGRLFIEVFEEETKKIEGVEFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V            +        +   +N+ +  P     ++++RS   
Sbjct: 327 AQGTLYPDVIESV----SAIGESVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRSLGR 382

Query: 183 QRNIS 187
           +  + 
Sbjct: 383 ELGLP 387


>gi|15618353|ref|NP_224638.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila pneumoniae
           CWL029]
 gi|15835971|ref|NP_300495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae J138]
 gi|16752601|ref|NP_444864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae AR39]
 gi|33241787|ref|NP_876728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae TW-183]
 gi|6647887|sp|Q9Z8A5|MNMA_CHLPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|4376720|gb|AAD18582.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029]
 gi|7189243|gb|AAF38171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila pneumoniae AR39]
 gi|8978810|dbj|BAA98646.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138]
 gi|33236296|gb|AAP98385.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183]
          Length = 361

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 39/200 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-------DEVRYVS 74
           ++VA+SGG DS  +        + +  G              E ++        +   V 
Sbjct: 5   VIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMK-------NWEEDSEGGLCSSTKDYEDVE 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
            VC +L I +  VS+     +                       RE ++ L+ +  + + 
Sbjct: 58  RVCLQLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELG 117

Query: 119 ATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              + T H      +  ET  +R      ++   LSG   + L++    +  P     + 
Sbjct: 118 GDYLATGHYCRLNTELQETQLLRGCDPQKDQSYFLSGTPKSALHN----VLFPLGEMNKT 173

Query: 176 DIRSFLLQRNISWCE--DPS 193
           ++R+   Q  +   E  D +
Sbjct: 174 EVRAIAAQAALPTAEKKDST 193


>gi|329920354|ref|ZP_08277086.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus iners SPIN
           1401G]
 gi|328936030|gb|EGG32483.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus iners SPIN
           1401G]
          Length = 517

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 67/187 (35%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTI-NATL 121
            V + +   L I    V   +       G+    R+ +        + +E A+ + +   
Sbjct: 267 QVMAALNKELGINIIKVDAADRFLSKLAGVTEPERKRKIIGKEFIEVFNEEAQKLKDIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  D++  +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRVLG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGLPH 387


>gi|312871538|ref|ZP_07731631.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 3008A-a]
 gi|311092933|gb|EFQ51284.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LEAF 3008A-a]
          Length = 517

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 67/187 (35%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTI-NATL 121
            V + +   L I    V   +       G+    R+ +        + +E A+ + +   
Sbjct: 267 QVMAALNKELGINIIKVDAADRFLSKLAGVTEPERKRKIIGKEFIEVFNEEAQKLKDIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  D++  +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRVLG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGLPH 387


>gi|309809216|ref|ZP_07703086.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170450|gb|EFO72473.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 517

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 67/187 (35%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTI-NATL 121
            V + +   L I    V   +       G+    R+ +        + +E A+ + +   
Sbjct: 267 QVMAALNKELGINIIKVDAADRFLSKLAGVTEPERKRKIIGKEFIEVFNEEAQKLKDIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  D++  +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRVLG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGLPH 387


>gi|259500954|ref|ZP_05743856.1| GMP synthase [Lactobacillus iners DSM 13335]
 gi|302190594|ref|ZP_07266848.1| GMP synthase [Lactobacillus iners AB-1]
 gi|309806491|ref|ZP_07700495.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 03V1-b]
 gi|259167648|gb|EEW52143.1| GMP synthase [Lactobacillus iners DSM 13335]
 gi|308167090|gb|EFO69265.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners LactinV 03V1-b]
          Length = 517

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 67/187 (35%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTI-NATL 121
            V + +   L I    V   +       G+    R+ +        + +E A+ + +   
Sbjct: 267 QVMAALNKELGINIIKVDAADRFLSKLAGVTEPERKRKIIGKEFIEVFNEEAQKLKDIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  D++  +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRVLG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGLPH 387


>gi|108563408|ref|YP_627724.1| GMP synthase [Helicobacter pylori HPAG1]
 gi|123246942|sp|Q1CSM2|GUAA_HELPH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|107837181|gb|ABF85050.1| GMP synthase [Helicobacter pylori HPAG1]
          Length = 508

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +    +L AVSGG DS  +   L+  + D         A+ VDH  LR+    E  
Sbjct: 203 LKEKIANDKVLCAVSGGVDSTVVATLLYRAIKD------NLIAVFVDHGLLRKN---EKE 253

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V  +   L+I  + +  K 
Sbjct: 254 RVQAMFKDLQIPLNTIDAKG 273


>gi|265767771|ref|ZP_06095303.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
 gi|263252443|gb|EEZ23971.1| tRNA methyl transferase [Bacteroides sp. 2_1_16]
          Length = 362

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 51/195 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LV +SGG DS    + L           +                DE +   ++ 
Sbjct: 4   SKKRVLVGMSGGIDSTATCMMLQE--QGYEIVGVTMRVW----------GDEPQDARELA 51

Query: 78  SRLRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATL 121
           +R+ I H V   +     T     +   R+ R             + ++ E A  +    
Sbjct: 52  ARMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDW 111

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFL 170
           I T H              R     G       D    D + ++ R           P  
Sbjct: 112 IATGH------------YSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLG 159

Query: 171 RCRREDIRSFLLQRN 185
              ++ +R +L ++ 
Sbjct: 160 NYTKQTVRDYLREKG 174


>gi|302672133|ref|YP_003832093.1| GMP synthase GuaA [Butyrivibrio proteoclasticus B316]
 gi|302396606|gb|ADL35511.1| GMP synthase GuaA [Butyrivibrio proteoclasticus B316]
          Length = 516

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 30/199 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  V    +L+A+SGG DS  L   L   +        + + + VDH  L
Sbjct: 202 SFVENTIAEIREKVGDGKVLLALSGGVDSSVLAALLAKAIGK------QLTCVFVDHGLL 255

Query: 63  RETAKDEVRYV-------------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL 109
           R+   DEV  V              +   R       V     K +       R     +
Sbjct: 256 RKNEGDEVESVFGPNGNFDINFIRVNAAERYYAKLKGVEEPERKRKIIGEEFIR-----V 310

Query: 110 ISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             E AK I     +     + D +E+     +    +    + G+ D + +     I  P
Sbjct: 311 FEEEAKKIGKVDFLAQGTIYPDVVESGL-GGESVVIKSHHNVGGLPDYVDFK---EIIEP 366

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R   L+  + 
Sbjct: 367 LRLLFKDEVRKAGLELGLP 385


>gi|257064612|ref|YP_003144284.1| GMP synthase (glutamine-hydrolyzing) [Slackia heliotrinireducens
           DSM 20476]
 gi|256792265|gb|ACV22935.1| GMP synthase (glutamine-hydrolyzing) [Slackia heliotrinireducens
           DSM 20476]
          Length = 536

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 62/200 (31%), Gaps = 32/200 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     ++  V  + +++ +SGG DS  +       +  R       + + V+H  LR+
Sbjct: 209 IEDSVRAIQEQVGDSRVILGLSGGVDSSVVAALCARAIGSR------LTCVFVNHGLLRK 262

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYAL---ISEHA 114
              +EV  V     +  +    V     +   GL           R             A
Sbjct: 263 NEPEEVEEV--FTKQFDVDF--VHVHAEERYAGLLAGVVDPEEKRRIIGTQFWNEFFAVA 318

Query: 115 KTINAT-----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISR 167
           + I         +     + D +E+      R    K   +    + I +   +   +  
Sbjct: 319 QDIAEDGRPVQFMAQGTIYPDIIES----GARKTGGKASTIKSHHNLIPFPEGVHFDLIE 374

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R+      + 
Sbjct: 375 PLDHFFKDEVRALGTALGLP 394


>gi|182679942|ref|YP_001834088.1| tRNA-specific 2-thiouridylase MnmA [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|205813049|sp|B2IBH3|MNMA_BEII9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|182635825|gb|ACB96599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 431

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 68/197 (34%), Gaps = 36/197 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEVRYVS 74
            ++VA+SGG DS  +   L     +     ++      DH     R+    A  +++   
Sbjct: 31  RVVVAMSGGVDSSVVAALLKREGYEVIGVTLQLY----DHGEAVHRKGACCAGQDIQDAR 86

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
            V  +L I H V+ ++    +  +   A                 E ++A + E A+ + 
Sbjct: 87  QVADQLGIPHYVLDYEERFRRKVIDPFAQSYATGETPIPCVSCNSEIKFADLFETAQHLG 146

Query: 119 ATLIMTAHTFDDQLET----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-PFLRCR 173
           A ++ T H    + E        RS     ++   L         +  L + R P     
Sbjct: 147 ADVLATGHYVSSKAEADGGRALYRSLDSSRDQSYFLFATT-----NAQLELLRFPLGDLA 201

Query: 174 REDIRSFLLQRNISWCE 190
           + D+R    Q  +   +
Sbjct: 202 KPDVRQMARQLGLVVAD 218


>gi|118444647|ref|YP_878354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium novyi NT]
 gi|205813888|sp|A0Q152|MNMA_CLONN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118135103|gb|ABK62147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium novyi NT]
          Length = 350

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 52/195 (26%), Gaps = 49/195 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             + V +SGG DS      L     D     +K S             D       V  +
Sbjct: 6   KKVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKVSC----------DLDVSEDAKKVADK 55

Query: 80  LRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLIM 123
           L I + V+          +   A E                 ++  + + AK + A  I 
Sbjct: 56  LGIPYYVIDLTEEFKNKVIDNFAEEYLQGRTPNPCAVCNKHIKFGALIQKAKELGADYIA 115

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGL-----------SGMCDTILYDLNLWISRPFLRC 172
           T H              R     G  L           + M  ++  D+   I  P    
Sbjct: 116 TGHYA------------RIEEHNGRFLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEY 163

Query: 173 RREDIRSFLLQRNIS 187
            ++ IR    +  + 
Sbjct: 164 TKDQIREIAKKIGLE 178


>gi|297566590|ref|YP_003685562.1| GMP synthase large subunit [Meiothermus silvanus DSM 9946]
 gi|296851039|gb|ADH64054.1| GMP synthase, large subunit [Meiothermus silvanus DSM 9946]
          Length = 507

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 26/194 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E++   +R+ V    +++AVSGG DS  L + L   + D+       +AI VDH  LR+
Sbjct: 197 LETLIEEIRAKVGRDRVMLAVSGGVDSSTLALLLSRAVGDK------LTAIFVDHGLLRQ 250

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
             + E   V      L     VV             S P+       RE      +E  K
Sbjct: 251 GERHE---VEAALRPLGDGFRVVDAAEQFLTALKGVSDPEEKRRVVGREFIRVFEAEARK 307

Query: 116 --TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +     + D +E+             +        +  DL   +  PF    
Sbjct: 308 LSQEGYRWLAQGTLYPDVIES-----AGGEGAANIKSHHNVGGLPPDLKFELLEPFRYLF 362

Query: 174 REDIRSFLLQRNIS 187
           ++++R   L   + 
Sbjct: 363 KDEVRELALLLGLP 376


>gi|205372406|ref|ZP_03225220.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus coahuilensis m4-4]
          Length = 517

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R+LV   ++L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 207 NFIEMEMEKIRNLVGDKNVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 260

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   KDE   V         +    V  K+         S P+        E  Y    E
Sbjct: 261 R---KDEAEGVMKTFSEGFNMNVIKVDAKDRFLSKLEGVSDPEKKRKIIGNEFIYVFDDE 317

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      +     + D +E            + +        +  D+   +  P    
Sbjct: 318 AAKLEGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMKFQLIEPLNTL 371

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 372 FKDEVRKLGSELGIP 386


>gi|18976558|ref|NP_577915.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18892117|gb|AAL80310.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 275

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 17/112 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLR 81
           +VA SGG DS   L         +    I   A+ VDH      A +  + VS+    L 
Sbjct: 57  IVAYSGGKDSTVALYL------AKEEYDIDVEAVMVDHGFMAPQAIENAKKVSEY---LN 107

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +  +++    S+                       + ++A       I++ H
Sbjct: 108 VPLTIIREDYSEIFKDALLKAKSPCRKCSRRTMEALRKYALEKGYKYIISGH 159


>gi|239625091|ref|ZP_04668122.1| asparagine synthase [Clostridiales bacterium 1_7_47_FAA]
 gi|239519321|gb|EEQ59187.1| asparagine synthase [Clostridiales bacterium 1_7_47FAA]
          Length = 273

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +S  E ++  +R LV    I +A SGG DS  LL        +      K  A++ D 
Sbjct: 1   MRMSDREMLQARMRELVSED-ICLAFSGGVDSSLLLKVAADAAVETGK---KVYAVTFDS 56

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHA 114
            L  +   E+     V   L   H V+     + +             +   +  + + A
Sbjct: 57  RLHPSCDLEIA--RRVAGELGGIHQVIEVDELEQEEIRMNPVNRCYLCKRHLFMSLKKLA 114

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRC 172
                + I+     DD      M   R       G+  + +       L I  P   L  
Sbjct: 115 GEYGVSRILDGTNEDD------MHVYRP------GIQALKE-------LGIISPLAELHI 155

Query: 173 RREDIRSFLLQRNIS 187
            ++ ++    +  IS
Sbjct: 156 TKDAVKQMAAEYGIS 170


>gi|160914335|ref|ZP_02076554.1| hypothetical protein EUBDOL_00343 [Eubacterium dolichum DSM 3991]
 gi|158433808|gb|EDP12097.1| hypothetical protein EUBDOL_00343 [Eubacterium dolichum DSM 3991]
          Length = 430

 Score = 59.9 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 36/192 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKD--- 68
           +RS V    +L+A+SGG DS  +   L   +        +   + V+H L R+   +   
Sbjct: 129 IRSQVGDKKVLLALSGGVDSSVVAAMLIKAIGK------QLVCVHVNHGLMRKGESESVV 182

Query: 69  -------EVRYV-----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                  +   V          +L             P+        E       E  K 
Sbjct: 183 EVFKNQMDANLVYVDASERFLKKLE--------NVDDPEAKRKIIGAEFIRVFEEEARKL 234

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                +     + D +E            K +        +  DL   +  P     +++
Sbjct: 235 EGIDFLAQGTIYPDIVE------SGTKTAKVVKSHHNVGGLPEDLEFELVEPLYYLFKDE 288

Query: 177 IRSFLLQRNISW 188
           +R+  ++  +  
Sbjct: 289 VRACGVELGLPH 300


>gi|88603431|ref|YP_503609.1| hypothetical protein Mhun_2185 [Methanospirillum hungatei JF-1]
 gi|88188893|gb|ABD41890.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 270

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 36/184 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVC 77
            A +L+A SGG DS      L +VL+  + G      + VD        +  V    +  
Sbjct: 17  HAPLLIAYSGGVDST-----LLAVLTRETIGAEHMHCVLVD---GPEVPRRAVTAAINQS 68

Query: 78  SRLRIAHSV---VSWKNSKPQTGLMAAAREAR---YALISEHAKTINATLIMTAHTFDDQ 131
             L+I  +V   V +     +T      R  +   Y ++ + A     T I       D 
Sbjct: 69  EYLKIPLTVREGVPFSRDLQKTNPHDRCRHCKLGTYTILKQIADDTGCTYIADGANASDL 128

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWC 189
            E                       I    +  +  PF+     ++DIR      ++ + 
Sbjct: 129 GE-------------------HRPGIEAFSSCGVIHPFIMAGITKQDIRDIAKSMDLPFW 169

Query: 190 EDPS 193
           + PS
Sbjct: 170 DKPS 173


>gi|37526694|ref|NP_930038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|81571961|sp|Q7MB22|MNMA_PHOLL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|36786126|emb|CAE15178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 367

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDDEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E R                  A +   
Sbjct: 57  ADAQSVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ +NA  I T H     D   ++  +R   +  ++   L  +    +         P  
Sbjct: 117 AEDLNADYIATGHYVRRRDINGKSQLLRGLDNNKDQSYFLYTLSHQQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 173 ELEKPEVRRIAEKIGL 188


>gi|167037943|ref|YP_001665521.1| ExsB family protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751779|ref|ZP_05492652.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|320116360|ref|YP_004186519.1| PP-loop domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856777|gb|ABY95185.1| ExsB family protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749307|gb|EEU62338.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929451|gb|ADV80136.1| PP-loop domain protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 286

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 60/190 (31%), Gaps = 36/190 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +R     L+   + L+A SGG DS  L    + VL +R       S +         +
Sbjct: 15  EKLRKLQEYLLKLDNALIAFSGGVDSTFLAKVSYDVLGNRVLAVTATSPMH------PKS 68

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN-------SKPQTGLMAAAREARYALISEHAKTINA 119
             E++   ++  ++ I H VV + +        K         +   ++     A+    
Sbjct: 69  --ELKEAVELAKKIGIPHLVVEFNDILEIEEFRKNPLNRCYICKSNLFSRFKAIAEEKGF 126

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDI 177
             I+     DD                   +S           L I  P L    ++E+I
Sbjct: 127 KYILEGTNADD-------------------VSDFRPGRRALKELGILSPLLECGIKKEEI 167

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 168 RILSKEMGLP 177


>gi|256619544|ref|ZP_05476390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 4200]
 gi|307276004|ref|ZP_07557137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2134]
 gi|256599071|gb|EEU18247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 4200]
 gi|295113315|emb|CBL31952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus sp. 7L76]
 gi|306507334|gb|EFM76471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2134]
          Length = 374

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKRRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           + V+ V  ++ I +  V+++             E R                +    ++A
Sbjct: 57  KDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+ET        +R   +  ++   LS +    L         P
Sbjct: 117 MQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGGMEKSEVRAIAERAGLA 189


>gi|255011782|ref|ZP_05283908.1| putative tRNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 364

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 8   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAVR 55

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +     T     +   R+ R             + ++ E A  +    I 
Sbjct: 56  MGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWIA 115

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R     G       D    D + ++ R           P    
Sbjct: 116 TGH------------YSRLEERNGYIYIVAGDDEKKDQSYFLWRLGQDVLRRCIFPLGNY 163

Query: 173 RREDIRSFLLQRN 185
            ++ +R +L ++ 
Sbjct: 164 TKQTVRDYLREKG 176


>gi|254467291|ref|ZP_05080702.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacterales bacterium
           Y4I]
 gi|206688199|gb|EDZ48681.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacterales bacterium
           Y4I]
          Length = 520

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 22/191 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E++R  +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR+ 
Sbjct: 211 EAIRL-IREQVGDKKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRKN 263

Query: 66  AKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI---- 117
             +EV  V        I          +             R+    L  +  +      
Sbjct: 264 EAEEV--VKMFRDNYNIQLIHADESELFLGELEGQSDPETKRKIIGKLFIDVFQKHADTI 321

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 322 DGAEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 378

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 379 VRALGHELGLP 389


>gi|149915285|ref|ZP_01903813.1| GMP synthase [Roseobacter sp. AzwK-3b]
 gi|149811006|gb|EDM70845.1| GMP synthase [Roseobacter sp. AzwK-3b]
          Length = 520

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 64/191 (33%), Gaps = 22/191 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E++R  +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR  
Sbjct: 211 EAIRL-IREQVGDKQVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRHN 263

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKT 116
             DEV  V+       I        +         S P+       R          ++ 
Sbjct: 264 EADEV--VTMFRDHYNIPLIHADEADLFLGELEGVSDPEAKRKTIGRLFIDVFQKYASQI 321

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 322 EGAEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 378

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 379 VRALGHELGLP 389


>gi|56420500|ref|YP_147818.1| hypothetical protein GK1965 [Geobacillus kaustophilus HTA426]
 gi|297529858|ref|YP_003671133.1| asparagine synthase [Geobacillus sp. C56-T3]
 gi|56380342|dbj|BAD76250.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
 gi|297253110|gb|ADI26556.1| asparagine synthase [Geobacillus sp. C56-T3]
          Length = 274

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 44/206 (21%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    ++     +  L    ++LVA SGG DS  LL     VL D+    +  +A+    
Sbjct: 1   MEKHLLQKREQLIHILKGMGNVLVAFSGGVDSTFLLAMAKEVLGDQV---LAVTAV---- 53

Query: 61  CLRETAK----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL------MAAAREARYALI 110
                ++     EV++ + +  ++ + H  +     K +  +          +   Y  +
Sbjct: 54  -----SETFPTREVQHATKLAEQIGVKHIKIQINELKNEDFVKNDLYRCFHCKNNLYTHL 108

Query: 111 SEHAKTINATL-IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            E A+  + T  ++     DD  E                       +     L +  P 
Sbjct: 109 GELARKYSETYTVVDGSNMDDLGE-------------------YRPGLQAARQLGVRSPL 149

Query: 170 --LRCRREDIRSFLLQRNISWCEDPS 193
                 +++IR    +  +   + PS
Sbjct: 150 QEAELYKKEIRILSKEMGLETWDKPS 175


>gi|239624724|ref|ZP_04667755.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521110|gb|EEQ60976.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 432

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 28/189 (14%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   +        + + + V+H L R+   + V
Sbjct: 130 LIREQVGDRKVLLALSGGVDSSVVAALLIKAIGR------QLTCVHVNHGLMRKGESESV 183

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAA----------REARYALISEHAKTINA 119
             V     + ++  ++V     +   G L   A           E       E  K    
Sbjct: 184 IEV----FKNQMDANLVYVDAVERFLGKLEGVADPEQKRKIIGAEFIRVFEEEARKLEGI 239

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  DL+  +  P  +  ++++R+
Sbjct: 240 DFLAQGTIYPDIVE------SGTKTAKVVKSHHNVGGLPEDLDFTLVEPLRQLFKDEVRA 293

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 294 CGLELGLPY 302


>gi|15606458|ref|NP_213838.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5]
 gi|6226257|sp|O67274|MNMA_AQUAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2983672|gb|AAC07238.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5]
          Length = 356

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 62/208 (29%), Gaps = 61/208 (29%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVD--HCLRETAKDEVRYVSD 75
            + V +SGG DS    + L     D     ++F    A  V+  H +   +  +V+  S 
Sbjct: 2   RVAVGMSGGVDSSVTALLLKEQGHDVIRVTLRFHTVEACEVNETHNV-CCSPKDVQDASR 60

Query: 76  VCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTI-N 118
           V  RL I H V SW+                        A   RE +    + + K + +
Sbjct: 61  VAKRLGIPHLVFSWEEIFKSKVIDYFVEEYKRGRTPNPCALCNREVKTGFFARYLKQVAD 120

Query: 119 ATLIMTAHTFD-------------------DQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
              + T H                      DQ  T ++   R                  
Sbjct: 121 IDKLATGHYAKIEEDKKYGLVIKRPKDRKRDQ--TYFLSLVR-----------------R 161

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +    ++ P     +E++R    +  + 
Sbjct: 162 EDLELLTFPLGAYTKEEVREIAKRYGLE 189


>gi|329116668|ref|ZP_08245385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parauberis NCFD 2020]
 gi|326907073|gb|EGE53987.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parauberis NCFD 2020]
          Length = 372

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 7   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDELGVCT--------ATEDYKDV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
           + V  ++ I +  V+++                A R          E ++    ++A T+
Sbjct: 59  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYKAGRTPNPDVMCNKEIKFKAFLDYAMTL 118

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      DQ  TV  +R   +  ++   LS +    L         P    +
Sbjct: 119 GADYVATGHYAQIERDQYGTVHMLRGVDNGKDQTYFLSQLSQKQLQKT----LFPLGHLQ 174

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 175 KPEVRAIAEKAGLA 188


>gi|257870651|ref|ZP_05650304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus gallinarum EG2]
 gi|257804815|gb|EEV33637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus gallinarum EG2]
          Length = 372

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 63/196 (32%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 7   RVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDDTDENGVCT--------ATEDYKDV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++            A  R  R             +    ++A  +
Sbjct: 59  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118

Query: 118 NATLIMTAHTFDDQLE------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H    Q+E      T  +R      ++   LS +    L         P   
Sbjct: 119 GADYVATGHYA--QVETDENGVTHMLRGVDSNKDQTYFLSQLSQAQLSKTMF----PLGG 172

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 173 MEKSEVRAIAERAGLA 188


>gi|325567216|ref|ZP_08143883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158649|gb|EGC70795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 372

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 7   RVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDDTDENGVCT--------ATEDYKDV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++            A  R  R             +    ++A  +
Sbjct: 59  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D+   T  +R   +  ++   LS +    L         P     
Sbjct: 119 GADYVATGHYAQVTVDENGVTHMLRGVDNNKDQTYFLSQLSQEQLSKTMF----PLGGME 174

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 175 KSEVRAIAERAGLA 188


>gi|257876279|ref|ZP_05655932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC20]
 gi|257810445|gb|EEV39265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC20]
          Length = 372

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 7   RVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDDTDENGVCT--------ATEDYKDV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++            A  R  R             +    ++A  +
Sbjct: 59  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D+   T  +R   +  ++   LS +    L         P     
Sbjct: 119 GADYVATGHYAQVTVDENGVTHMLRGVDNNKDQTYFLSQLSQEQLSKTMF----PLGGME 174

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 175 KSEVRAIAERAGLA 188


>gi|257866681|ref|ZP_05646334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC30]
 gi|257872802|ref|ZP_05652455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC10]
 gi|257800639|gb|EEV29667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC30]
 gi|257806966|gb|EEV35788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus casseliflavus EC10]
          Length = 372

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 7   RVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDDTDENGVCT--------ATEDYKDV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++            A  R  R             +    ++A  +
Sbjct: 59  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D+   T  +R   +  ++   LS +    L         P     
Sbjct: 119 GADYVATGHYAQVTVDENGVTHMLRGVDNNKDQTYFLSQLSQEQLSKTMF----PLGGME 174

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 175 KSEVRAIAERAGLA 188


>gi|295105625|emb|CBL03169.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 516

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  +    +L A+SGG DS  L   L   +        + + + VDH  L
Sbjct: 200 SFVENNVKALRERIGEGKVLCALSGGVDSSVLAAMLAKAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYVSDV----CSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALI 110
           R+  K+EV   S       +   I    V  ++       G+    R+ +        + 
Sbjct: 254 RKNEKEEV--CSVFGPGNANGFDINFICVDARDRYFSKLKGITEPERKRKIIGEEFIRVF 311

Query: 111 SEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            E AK I     +     + D +E+     +    +    + G+ DT+ +     +  P 
Sbjct: 312 EEEAKKIGKVDFLAQGTIYPDVVESGL-GGESTVIKSHHNVGGLPDTVDFK---ELVEPL 367

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 368 RNLFKDEVRQAGRELGLP 385


>gi|157363281|ref|YP_001470048.1| thiamine biosynthesis protein [Thermotoga lettingae TMO]
 gi|157313885|gb|ABV32984.1| thiamine biosynthesis protein [Thermotoga lettingae TMO]
          Length = 301

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 82/223 (36%), Gaps = 30/223 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +LVAVSGG DS      L  +    S   I               ++    V  +  + 
Sbjct: 49  KLLVAVSGGKDSSVAWYVLKKLGYTTSGLFIDLGT-----------ENNTEIVKKISEKT 97

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA-----------RYALISEHAKTINATLIMTAHTFD 129
                +V+ K       +   +R             R  ++++ A   N   ++T H  D
Sbjct: 98  GEELLIVNGKQYFGGLTVAEISRIVKRPTCSICGLIRRYIMNKVAYEKNFDAVITGHNLD 157

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS---RPFLRCRREDIRSFLLQRNI 186
           D++ +  + +  ++  + +         + + N  +    +P +    ++I  + L   +
Sbjct: 158 DEV-SFLLGNVLNWQVEYI----KRQAPVLESNGRLIKKAKPLVWLTEKEIYVYALINRL 212

Query: 187 SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
           ++  +          ++ ++ + ++++    +K++ +++ + K
Sbjct: 213 TFSTERCPFSKNASSLKYKKVLNELEITQPGVKLRFYKEFQKK 255


>gi|146302985|ref|YP_001190301.1| GMP synthase [Metallosphaera sedula DSM 5348]
 gi|145701235|gb|ABP94377.1| GMP synthase (glutamine-hydrolyzing) [Metallosphaera sedula DSM
           5348]
          Length = 369

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 69/197 (35%), Gaps = 24/197 (12%)

Query: 1   MFL--SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     IE +   +RS+V    ++ AVSGG DS      ++ +L D      K + + +
Sbjct: 1   MFSPEKFIEEIEPQIRSVVGDNRVVAAVSGGVDSTTAAALMYRILGD------KVTPVMI 54

Query: 59  DHC-LRETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQ-TGLMAAAREAR---YALI 110
           D   LRE    E   V D+      L+I      + +S           ++ R   Y+ I
Sbjct: 55  DTGFLREN---EANRVKDLLKSVMPLKIVDRSERFISSIEGLEDAEEKRKKFRDVFYSTI 111

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           SE     N+  ++      D +ET     Q     +   L  +           +  P  
Sbjct: 112 SEIVAQENSRFLVQGTIAPDWIET-----QGGIKTQHNVLVQLGINTEKTWGFSLVEPLA 166

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R       + 
Sbjct: 167 DLYKNEVRELARYLGLP 183


>gi|313149619|ref|ZP_07811812.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138386|gb|EFR55746.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 362

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAVR 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +     T     +   R+ R             + ++ E A  +    I 
Sbjct: 54  MGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWIA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R     G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEERNGYIYIVAGDDEKKDQSYFLWRLGQDVLRRCIFPLGNY 161

Query: 173 RREDIRSFLLQRN 185
            ++ +R +L ++ 
Sbjct: 162 TKQTVRDYLREKG 174


>gi|257082170|ref|ZP_05576531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis E1Sol]
 gi|256990200|gb|EEU77502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis E1Sol]
          Length = 374

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           + V+ V  ++ I +  V+++             E R                +    ++A
Sbjct: 57  KDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+ET        +R   +  ++   LS +    L         P
Sbjct: 117 IQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGGMEKSEVRAIAERAGLA 189


>gi|85375169|ref|YP_459231.1| GMP synthase [Erythrobacter litoralis HTCC2594]
 gi|84788252|gb|ABC64434.1| GMP synthase [Erythrobacter litoralis HTCC2594]
          Length = 524

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + +      + + + VDH L R+    E  
Sbjct: 220 IRAQVGDGKVICGLSGGVDSAVAAVLIHEAIGE------QLTCVFVDHGLMRQG---EAE 270

Query: 72  YVSDVCS-RLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V  +      I    V  ++            E +   I          E  K   A  
Sbjct: 271 QVVSLFRGHYNIPLVHVDAEDMFLGGLAGVTDPEKKRKFIGGAFIDLFEEEARKIGGADF 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R+  
Sbjct: 331 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRALG 387

Query: 182 LQRNIS 187
            +  + 
Sbjct: 388 RELGLP 393


>gi|171185967|ref|YP_001794886.1| GMP synthase [Thermoproteus neutrophilus V24Sta]
 gi|170935179|gb|ACB40440.1| GMP synthase, large subunit [Thermoproteus neutrophilus V24Sta]
          Length = 505

 Score = 59.5 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +++ VSGG DS    I +H  + DR+       A+ +DH L RE    E  
Sbjct: 204 IREEVKDGDVIIGVSGGIDSTVTAILVHMAVGDRAK------AVFIDHGLFREG---EPE 254

Query: 72  YVSDVCSRLRIA-HSV---VSWKNSKPQTGLMAAARE-----ARYALISEHAKTINATLI 122
            V  + S L I  H V     +             R               +    A  +
Sbjct: 255 RVVALLSSLGIKTHYVDARERFLARLEGVSDCEEKRRIIGETFAEVFAEAISLFPQAKYL 314

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+             +        +     L +  P     ++++R    
Sbjct: 315 AQGTLYPDVIES-----GAVKGADKIKSHHNVGGMPKWFTLKLVEPLREFYKDEVRRLAK 369

Query: 183 QRNIS 187
              + 
Sbjct: 370 ALGLP 374


>gi|329568350|gb|EGG50159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1467]
          Length = 374

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           + V+ V  ++ I +  V+++             E R                +    ++A
Sbjct: 57  KDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+ET        +R   +  ++   LS +    L         P
Sbjct: 117 MQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGGMEKSEVRAIAERAGLA 189


>gi|328788856|ref|XP_003251195.1| PREDICTED: hypothetical protein LOC410867 [Apis mellifera]
          Length = 1615

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 38/179 (21%)

Query: 32   SMGLLIALHSVLSDRSFGKI--KFSAISVDHCLRETAKDEVR-----YVSDVCSRLRIAH 84
            S+ LL  LH          +  +  A +VD                  ++   + L + +
Sbjct: 1320 SLSLLHTLHQYRFYVRSKGVDFEIGAATVD----------ANGPNPVQLASYLNGLNVPY 1369

Query: 85   SVVSWKNSKPQ-----------------TGLMAAAREARYALISEHAKTINATLIMTAHT 127
                   S                    +G  +    A  A +   AK  N  ++     
Sbjct: 1370 FREEEGASNGNGKCDGGGDARGGEGVDASGACSFCDRATRAQLYAIAKRHNYNVLAVGQH 1429

Query: 128  FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD  E   +        +    +      +   +L + RPF+  R + +R F+  + +
Sbjct: 1430 LDDLTEGFLVSVFHGGKLR----TMKAHYYIRRQDLRVVRPFVYVREKALRQFVESKKL 1484


>gi|307287836|ref|ZP_07567872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0109]
 gi|306501170|gb|EFM70476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0109]
 gi|315164727|gb|EFU08744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1302]
          Length = 374

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           + V+ V  ++ I +  V+++             E R                +    ++A
Sbjct: 57  KDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+ET        +R   +  ++   LS +    L         P
Sbjct: 117 MQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGGMEKSEVRAIAERAGLA 189


>gi|229545347|ref|ZP_04434072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1322]
 gi|257084787|ref|ZP_05579148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Fly1]
 gi|229309554|gb|EEN75541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1322]
 gi|256992817|gb|EEU80119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis Fly1]
          Length = 374

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           + V+ V  ++ I +  V+++             E R                +    ++A
Sbjct: 57  KDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+ET        +R   +  ++   LS +    L         P
Sbjct: 117 MQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGGMEKSEVRAIAERAGLA 189


>gi|29376579|ref|NP_815733.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecalis V583]
 gi|227520188|ref|ZP_03950237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0104]
 gi|227555378|ref|ZP_03985425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HH22]
 gi|256762940|ref|ZP_05503520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T3]
 gi|256853584|ref|ZP_05558949.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8]
 gi|257079445|ref|ZP_05573806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis JH1]
 gi|257087270|ref|ZP_05581631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis D6]
 gi|257090346|ref|ZP_05584707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis CH188]
 gi|257419691|ref|ZP_05596685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T11]
 gi|257422150|ref|ZP_05599140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis X98]
 gi|294780347|ref|ZP_06745716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis PC1.1]
 gi|307270242|ref|ZP_07551555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4248]
 gi|307295656|ref|ZP_07575491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0411]
 gi|312900841|ref|ZP_07760135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0470]
 gi|312902847|ref|ZP_07762051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0635]
 gi|73920123|sp|Q820U1|MNMA_ENTFA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|29344043|gb|AAO81803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis V583]
 gi|227072360|gb|EEI10323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0104]
 gi|227175492|gb|EEI56464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HH22]
 gi|256684191|gb|EEU23886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T3]
 gi|256710527|gb|EEU25570.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8]
 gi|256987475|gb|EEU74777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis JH1]
 gi|256995300|gb|EEU82602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis D6]
 gi|256999158|gb|EEU85678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis CH188]
 gi|257161519|gb|EEU91479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T11]
 gi|257163974|gb|EEU93934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis X98]
 gi|294452611|gb|EFG21044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis PC1.1]
 gi|306496368|gb|EFM65945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0411]
 gi|306513458|gb|EFM82077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4248]
 gi|310633901|gb|EFQ17184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0635]
 gi|311291940|gb|EFQ70496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0470]
 gi|315025815|gb|EFT37747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2137]
 gi|315028590|gb|EFT40522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4000]
 gi|315031109|gb|EFT43041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0017]
 gi|315149261|gb|EFT93277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0012]
 gi|315157187|gb|EFU01204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0043]
 gi|315171619|gb|EFU15636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1342]
 gi|315173202|gb|EFU17219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1346]
 gi|315575062|gb|EFU87253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0309B]
 gi|315576621|gb|EFU88812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0630]
 gi|315582488|gb|EFU94679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0309A]
 gi|327535526|gb|AEA94360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis OG1RF]
          Length = 374

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           + V+ V  ++ I +  V+++             E R                +    ++A
Sbjct: 57  KDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+ET        +R   +  ++   LS +    L         P
Sbjct: 117 MQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGGMEKSEVRAIAERAGLA 189


>gi|315231454|ref|YP_004071890.1| hypothetical protein TERMP_01692 [Thermococcus barophilus MP]
 gi|315184482|gb|ADT84667.1| hypothetical protein TERMP_01692 [Thermococcus barophilus MP]
          Length = 274

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 14/111 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +VA SGG DS   L     V     +   +  A+ +DH     A + +     +   L +
Sbjct: 56  IVAFSGGKDSTVALYLAKEV-----YKVPELEAVMIDHGF--MAGEAIENAKRIAEYLNV 108

Query: 83  AHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             +++ +  S                  +     +  +A       I+T H
Sbjct: 109 QFTILRYDYSDIFREAFLKAQSPCRRCSKRTMEKLRRYALKKGVKYIITGH 159


>gi|225686194|ref|YP_002734166.1| GMP synthase [Brucella melitensis ATCC 23457]
 gi|256043277|ref|ZP_05446212.1| GMP synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256111721|ref|ZP_05452705.1| GMP synthase [Brucella melitensis bv. 3 str. Ether]
 gi|256262678|ref|ZP_05465210.1| GuaA [Brucella melitensis bv. 2 str. 63/9]
 gi|260564483|ref|ZP_05834968.1| GuaA family protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989701|ref|ZP_06102258.1| GMP synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993194|ref|ZP_06105751.1| GMP synthase [Brucella melitensis bv. 3 str. Ether]
 gi|254800089|sp|C0RKS9|GUAA_BRUMB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225642299|gb|ACO02212.1| GMP synthase, C-terminal domain-containing protein [Brucella
           melitensis ATCC 23457]
 gi|260152126|gb|EEW87219.1| GuaA family protein [Brucella melitensis bv. 1 str. 16M]
 gi|262764064|gb|EEZ10096.1| GMP synthase [Brucella melitensis bv. 3 str. Ether]
 gi|263000370|gb|EEZ13060.1| GMP synthase [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092464|gb|EEZ16717.1| GuaA [Brucella melitensis bv. 2 str. 63/9]
 gi|326410537|gb|ADZ67601.1| GMP synthase [Brucella melitensis M28]
 gi|326553828|gb|ADZ88467.1| GMP synthase [Brucella melitensis M5-90]
          Length = 520

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++ A+SGG DS    +  H  + D      + + I VDH L R  
Sbjct: 210 EQAVEAIRKQVGSGKVICALSGGVDSSVAALLAHEAVGD------QLTCILVDHGLMR-- 261

Query: 66  AKDEVRYVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
            KDEV+ V ++      +   +V   +         S P+       R        E  K
Sbjct: 262 -KDEVQQVVEMFREHYNLPLILVDASDRFIGALEGESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E+V   S        +        +   + + +  P     ++
Sbjct: 321 LGGADFLVQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKD 377

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 378 EVRLLGKELGLP 389


>gi|115372574|ref|ZP_01459881.1| PP-loop [Stigmatella aurantiaca DW4/3-1]
 gi|115370295|gb|EAU69223.1| PP-loop [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 5/143 (3%)

Query: 85  SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYA 144
             +  + + P     +     R  ++   A  +  T I   H  DD + T+ +       
Sbjct: 47  YSIVLEKTPPGKTQCSVCSRMRRGILYTAAVELGCTKIALGHHRDDLIHTLLLNLF---- 102

Query: 145 EKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC-EDPSNTDDRFERVR 203
             G   +        D    + RP      ++I  F   +       D   + +  +R R
Sbjct: 103 FAGSLKAMPPLLRSDDGRNTVIRPLCYAPEKEIAQFAELKGFPIIPCDLCGSQENLQRKR 162

Query: 204 VRRFVRDIDLHALYLKMKKFQDL 226
           ++R V ++      ++      +
Sbjct: 163 MQRLVEELGREIPNVRQSLLSAM 185


>gi|29840331|ref|NP_829437.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Chlamydophila caviae GPIC]
 gi|33301148|sp|Q822V6|GUAA_CHLCV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29834680|gb|AAP05315.1| GMP synthase [Chlamydophila caviae GPIC]
          Length = 512

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSR 79
            +L+ +SGG DS  L + LH+ L DR       S + VD   LR+    EV  V    S 
Sbjct: 219 RVLLGLSGGVDSSVLAVLLHNALGDR------LSCVFVDTGLLRKN---EVEEVKQQFSS 269

Query: 80  LRIAHSVVSWKNS--KPQTGLM--AAAREARYAL----ISEHAKTINATLIMTAHTFDDQ 131
           L +   VV          +G+      R+   A       E ++ ++   +     + D 
Sbjct: 270 LGLEILVVDASEKFFHDLSGIEDPEQKRKVIGAAFIEVFDEVSRNLDVQWLAQGTIYSDV 329

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +E+    ++   A + +        +   LNL +  P     ++++R+      + 
Sbjct: 330 IES----AKSCDATQVIKSHHNVGGLPEKLNLKLLEPLRFLFKDEVRALGKVLGLP 381


>gi|108760981|ref|YP_631957.1| GMP synthase [Myxococcus xanthus DK 1622]
 gi|108464861|gb|ABF90046.1| GMP synthase [Myxococcus xanthus DK 1622]
          Length = 517

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 26/193 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V    R +     ++ A+SGG DS    + LH  +        +   I VD+  LR+ 
Sbjct: 208 EAVGTIRRQVGEHGRVICALSGGVDSSVAALLLHRAI------GPRLQCIFVDNGVLRQN 261

Query: 66  AKD--EVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHA 114
            +   E  +V     R  +    V  +          + P+       RE          
Sbjct: 262 ERAQVEALFV----DRFHVPLKTVDARQRFLDKLAGVTDPEKKRKIIGREFIAVFEEAAR 317

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              +A  +     + D +E+V  +      +    + G+ +T    + L +  P     +
Sbjct: 318 DVQDAEFLAQGTLYPDVIESVSYKGPSVTIKSHHNVGGLPET----MKLKLVEPLRELFK 373

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 374 DEVRALGRELGLP 386


>gi|307354802|ref|YP_003895853.1| PP-loop domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307158035|gb|ADN37415.1| PP-loop domain-containing protein [Methanoplanus petrolearius DSM
           11571]
          Length = 277

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 60/199 (30%), Gaps = 43/199 (21%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI---KFSAISVDHCLR 63
           E +R     +     +LV+ SGG DS  L +A   VL  R    +               
Sbjct: 20  EKIRKLKDVINSAGSLLVSYSGGVDSTVLAVAAKEVLPARMSCALIDSPLV--------- 70

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKT 116
             ++ E+R   ++   L +  SV+     +  T      R+  Y        L+   A+ 
Sbjct: 71  --SRSEIREALELAESLSLPCSVIKSDILE-DTEFRENGRDRCYICKKKMSGLLLREAEM 127

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRR 174
           +    +       D                G   SG            I  PF+     +
Sbjct: 128 LGLEHVADGSNISDLA----------KFRPGFQASGEAG---------IIHPFIEAGMDK 168

Query: 175 EDIRSFLLQRNISWCEDPS 193
           EDIR       +   E PS
Sbjct: 169 EDIRKLARIYGLPVSEKPS 187


>gi|15835060|ref|NP_296819.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Chlamydia muridarum Nigg]
 gi|270285228|ref|ZP_06194622.1| GMP synthase [Chlamydia muridarum Nigg]
 gi|270289247|ref|ZP_06195549.1| GMP synthase [Chlamydia muridarum Weiss]
 gi|301336623|ref|ZP_07224825.1| GMP synthase [Chlamydia muridarum MopnTet14]
 gi|13627143|sp|Q9PKM3|GUAA_CHLMU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|7190487|gb|AAF39296.1| GMP synthase [Chlamydia muridarum Nigg]
          Length = 512

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSR 79
            +L+ +SGG DS  L + LH+ L DR       S + VD   LR+    EV  V    S 
Sbjct: 219 RVLLGLSGGVDSSVLAVLLHNALGDR------LSCVFVDTGLLRKN---EVEEVKQQFSS 269

Query: 80  LRIAHSVVSWKNS--KPQTGLM--AAAREARYAL----ISEHAKTINATLIMTAHTFDDQ 131
           L +   VV          +G+      R+   A       E +K ++   +     + D 
Sbjct: 270 LGLEILVVDASEKFFHDLSGIEDPEQKRKVIGAAFIEVFDEASKNLDVQWLAQGTIYSDV 329

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +E+    ++   A + +        +   LNL +  P     ++++R+      + 
Sbjct: 330 IES----AKSCDATQVIKSHHNVGGLPEKLNLKLLEPLRFLFKDEVRALGKVLGLP 381


>gi|188588033|ref|YP_001920516.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251778087|ref|ZP_04821007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|205813690|sp|B2V3V9|MNMA_CLOBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|188498314|gb|ACD51450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|243082402|gb|EES48292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 361

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 58/209 (27%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVD 59
           +    +LV +SGG DS      L                    + +R  G    SA+   
Sbjct: 3   LTKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAV--- 59

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AR---------- 103
                   ++ R V   C +L I   V+++++S  +  +          R          
Sbjct: 60  --------EDARRV---CDKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNK 108

Query: 104 EARYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
             ++  +   A+ I    I T H       DD+   + +RS  D  ++   L        
Sbjct: 109 HLKFDELLRKAQGIGVDYIATGHYAKIEKKDDRY--MLIRSDDDRKDQTYALYNFTQ--- 163

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            D       P     ++ IR    +  ++
Sbjct: 164 -DQLAHTLMPCGEYTKDRIREIAKEIGLA 191


>gi|187933232|ref|YP_001885369.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B str.
           Eklund 17B]
 gi|205813703|sp|B2THM7|MNMA_CLOBB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187721385|gb|ACD22606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 361

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 58/209 (27%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVD 59
           +    +LV +SGG DS      L                    + +R  G    SA+   
Sbjct: 3   LTKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAV--- 59

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AR---------- 103
                   ++ R V   C +L I   V+++++S  +  +          R          
Sbjct: 60  --------EDARRV---CDKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNK 108

Query: 104 EARYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
             ++  +   A+ I    I T H       DD+   + +RS  D  ++   L        
Sbjct: 109 HLKFDELLRKAQGIGVDYIATGHYAKIDKKDDRY--MLIRSDDDRKDQTYALYNFTQ--- 163

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            D       P     ++ IR    +  ++
Sbjct: 164 -DQLAHTLMPCGEYTKDRIREIAKEIGLA 191


>gi|284048349|ref|YP_003398688.1| PP-loop domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283952570|gb|ADB47373.1| PP-loop domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 275

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 42/193 (21%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            ++ ++  +R L     + VA SGG DS  LL   H  L D+        A++     R 
Sbjct: 9   KLKQLQAILRDL---GSVAVAFSGGVDSTFLLKVAHDTLGDK------VLAVTA----RS 55

Query: 65  TA--KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKT 116
            +  + E++     C +  I H VV  +       S   T      +   +  I E AK 
Sbjct: 56  CSFPERELKEAKAFCEKEGIRHLVVDSEELSIPGFSHNPTNRCYLCKHELFEKILEVAKE 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRR 174
            +   ++     DD              +   GL  + +       L I+ P       +
Sbjct: 116 NHLAAVVEGSNLDD------------EGDYRPGLQAIAE-------LKIASPLRRAGLYK 156

Query: 175 EDIRSFLLQRNIS 187
           ++IR+   +  + 
Sbjct: 157 KEIRALSKELGLP 169


>gi|257416449|ref|ZP_05593443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis AR01/DG]
 gi|257158277|gb|EEU88237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ARO1/DG]
          Length = 374

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           + V+ V  ++ I +  V+++             E R                +    ++A
Sbjct: 57  KDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+ET        +R   +  ++   LS +    L         P
Sbjct: 117 MQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGGMGKSEVRAIAERAGLA 189


>gi|256851985|ref|ZP_05557372.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260661445|ref|ZP_05862358.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           115-3-CHN]
 gi|282931707|ref|ZP_06337195.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii 208-1]
 gi|297205144|ref|ZP_06922540.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii
           JV-V16]
 gi|256615397|gb|EEU20587.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           27-2-CHN]
 gi|260547900|gb|EEX23877.1| GMP synthase domain-containing protein [Lactobacillus jensenii
           115-3-CHN]
 gi|281304150|gb|EFA96264.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii 208-1]
 gi|297149722|gb|EFH30019.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus jensenii
           JV-V16]
          Length = 516

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + +      + +AI VDH  LR   KDE +
Sbjct: 215 IRKQVGDGKVILGLSGGVDSSVTATLLHKAIGN------QLTAIFVDHGLLR---KDEAK 265

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +   L +    V  +          ++P+       +E       E  K      
Sbjct: 266 QVMEALNRDLGVNIIKVDAQKRFLDKLKGVTEPEQKRKIIGKEFIEVFNEEAKKLDGVKF 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  DL   +  P  +  ++++R   
Sbjct: 326 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPKDLGFELVEPLRKLFKDEVRELG 379

Query: 182 LQRNISW 188
            +  I  
Sbjct: 380 EKLGIPH 386


>gi|296329079|ref|ZP_06871584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296153798|gb|EFG94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 343

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E    ++     VC +
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHL-EENLKDIEDAKKVCDK 53

Query: 80  LRIAHSVVSWKN---------------SKPQTGLMAAAR-EARYALISEHAKTINATLIM 123
           L I H VV+ +                S            E ++ ++ + A    A  + 
Sbjct: 54  LGIIHEVVNIRKDFENIVIKYFLDGYSSGKTPSPCVICDDEIKFKILFDIADKYKAEYVA 113

Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           T H T  +  E       +         S M   I  D    +  P     ++ IR   L
Sbjct: 114 TGHYTSVEYSEVFSKYLLKSVHSIIKDQSYMLYRISPDKLERLIFPLKPYSKQGIREIAL 173

Query: 183 QRNISWCE 190
           +  +   +
Sbjct: 174 KIGLEVHD 181


>gi|121602707|ref|YP_989294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella bacilliformis KC583]
 gi|166234845|sp|A1UTJ1|MNMA_BARBK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120614884|gb|ABM45485.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella bacilliformis KC583]
          Length = 391

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 68/215 (31%), Gaps = 50/215 (23%)

Query: 12  FVRSLVYP-----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           F+ SL  P     + ++VA+SGG DS  +   L     D     ++      DH     R
Sbjct: 2   FLNSLDLPGPPENSRVVVAMSGGVDSSVVAGLLKREGYDVVGITLQLY----DHGAATHR 57

Query: 64  ET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAR------------E 104
                A  ++     V   LRI + V+ +++   +  +     + AR             
Sbjct: 58  AGACCAGQDIEDARRVAETLRIPYYVLDYESRFREAVIDPFAESYARGETPIPCVACNQT 117

Query: 105 ARYALISEHAKTINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCD 155
            ++A +   A+ + A  + T H                    R      ++   L     
Sbjct: 118 VKFADLLVTARELGADALATGHYIRSVSYGTHR------ALFRPLDSERDQSYFLFATTQ 171

Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
             +     ++  P     +  +R    +  ++  +
Sbjct: 172 EQI----DYLRFPLGNLPKARVREIAKEMGLTVAD 202


>gi|315653965|ref|ZP_07906881.1| GMP synthase [Lactobacillus iners ATCC 55195]
 gi|315488661|gb|EFU78307.1| GMP synthase [Lactobacillus iners ATCC 55195]
          Length = 517

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMA---AAREARY-------ALISEHAKTI-NA 119
            V + +   L I  +++    +      +A      + R         + +E A+ + + 
Sbjct: 267 QVMAALNKELGI--NIIKVDAADRFLSKLAGVTEPEKKRKIIGKEFIEVFNEEAQKLKDI 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  D++  +  P  +  ++++R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRV 378

Query: 180 FLLQRNISW 188
              +  +  
Sbjct: 379 LGEKLGLPH 387


>gi|268323711|emb|CBH37299.1| conserved hypothetical protein [uncultured archaeon]
          Length = 265

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 37/197 (18%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E ++   + +    ++LVA SGG DS  LL   H VL+++        A++V +C L  
Sbjct: 1   MEKLKRLEKKIEEKENLLVAFSGGVDSGFLLKVAHDVLAEK------VLAVTV-YCELFP 53

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA------LISEHAKTIN 118
             K E+  +    +   I + +  +   +    +        Y       ++ E A    
Sbjct: 54  --KRELEELESFLNLAGIPYKIAQFYPLRNDNFVRNPCNRCYYCKRDFAMILKEIATEKG 111

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRED 176
            + I    T  D  E                       I       +  P   +   + +
Sbjct: 112 ISTIAEGVTSSDIDE-------------------YRPGIAASKEEGVWHPLVEVGITKHE 152

Query: 177 IRSFLLQRNISWCEDPS 193
           +R       + + + P 
Sbjct: 153 LRQIAKDIGLPFWDKPH 169


>gi|205829105|sp|Q1JED4|MNMA_STRPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+      +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVKRDENGTVYMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVREIAERAGLA 189


>gi|154493619|ref|ZP_02032939.1| hypothetical protein PARMER_02959 [Parabacteroides merdae ATCC
           43184]
 gi|154086829|gb|EDN85874.1| hypothetical protein PARMER_02959 [Parabacteroides merdae ATCC
           43184]
          Length = 435

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            VR  V    +L+A+SGG DS  +   L   + D      K   + V+H L R+   + V
Sbjct: 133 LVRRQVGDRKVLLALSGGVDSSVVAALLLKAIGD------KLVCVHVNHGLMRKGESENV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L          +         + P+        E       E  K      
Sbjct: 187 VEVFK--NQLNANLIYKDVTDRFLDKLAGVADPEEKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LAQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLKFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 299 LELGLPY 305


>gi|94991468|ref|YP_599568.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS10270]
 gi|94544976|gb|ABF35024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS10270]
          Length = 379

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 14  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 118 NATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+      +R   +  ++   LS +    L         P    +
Sbjct: 126 GADYVATGHYAQVKRDENGTVYMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 181

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 182 KSEVREIAERAGLA 195


>gi|76788488|ref|YP_330692.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus agalactiae A909]
 gi|123601021|sp|Q3JYG1|MNMA_STRA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76563545|gb|ABA46129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae A909]
          Length = 373

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D   E   +   R           +       L   +  P    +
Sbjct: 120 GADYVATGHYAQVTRD---ENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLF-PLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KPEVRRIAEEAGLA 189


>gi|77413211|ref|ZP_00789409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 515]
 gi|77160751|gb|EAO71864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 515]
          Length = 373

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGXFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D   E   +   R           +       L   +  P    +
Sbjct: 120 GADYVATGHYAQVTRD---ENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLF-PLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KPEVRRIAEEAGLA 189


>gi|22538278|ref|NP_689129.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus agalactiae
           2603V/R]
 gi|25012138|ref|NP_736533.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus agalactiae
           NEM316]
 gi|76798859|ref|ZP_00781068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 18RS21]
 gi|77406508|ref|ZP_00783561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae H36B]
 gi|77408912|ref|ZP_00785637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae COH1]
 gi|54039756|sp|P66979|MNMA_STRA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|54042260|sp|P66978|MNMA_STRA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|22535193|gb|AAN01002.1|AE014289_2 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 2603V/R]
 gi|24413682|emb|CAD47762.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585782|gb|EAO62331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae 18RS21]
 gi|77172503|gb|EAO75647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae COH1]
 gi|77174880|gb|EAO77696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae H36B]
          Length = 373

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D   E   +   R           +       L   +  P    +
Sbjct: 120 GADYVATGHYAQVTRD---ENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLF-PLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KPEVRRIAEEAGLA 189


>gi|256028712|ref|ZP_05442546.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D11]
 gi|289766621|ref|ZP_06525999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
 gi|289718176|gb|EFD82188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
          Length = 344

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 65/189 (34%), Gaps = 32/189 (16%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +KD +     VC++
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCNK 53

Query: 80  LRIAHSVVSWKN---------------SKPQTGLMAAAR-EARYALISEHAKTINATLIM 123
           L I H VV+ +                S            E ++ ++ + A    A  + 
Sbjct: 54  LEIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEYVA 113

Query: 124 TAH-TFDDQLETV----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           T H T  +  E       ++S     +     S M   +  +    +  P     +++IR
Sbjct: 114 TGHYTSVEYSEIFSKYLLLKSVHSIIKDQ---SYMLYRLSPNKLERLIFPLKYYTKQEIR 170

Query: 179 SFLLQRNIS 187
              L+  + 
Sbjct: 171 EIALKLGLE 179


>gi|169636484|ref|YP_001716025.1| ATP-binding protein [Geobacillus stearothermophilus]
 gi|169403024|emb|CAP08236.1| conserved hypothetical ATP-binding protein [Geobacillus
           stearothermophilus]
          Length = 406

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 37/192 (19%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKDEVR 71
           + +    HI++  SGG DS   L+A   +L+     KI          LR      DE  
Sbjct: 127 KMIEENDHIVLGFSGGRDSTAFLVARQKILNKLPNHKITNVT------LRGLPDWDDETA 180

Query: 72  Y--VSDVCSRLRIAHSVVSWKNSKPQTGLMA--------------------AAREARYAL 109
           +    ++ ++  I   VV  ++ + +  L A                            +
Sbjct: 181 FGYTKELSNKFGIEQYVVEPEDIQQEFNLKAPISEVLDELLHGPDAMHVIWIGHHMIRHM 240

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A+ +NA  +  A   +D L TV        +    G       +    N+    P 
Sbjct: 241 LRRAAERLNANKVALALNEEDCLATVL-------SCYSTGYLTGAMPVRRIGNIDYIYPL 293

Query: 170 LRCRREDIRSFL 181
               ++++  +L
Sbjct: 294 WLFPKKELNLYL 305


>gi|313884882|ref|ZP_07818634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619573|gb|EFR31010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 374

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
             A ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 4   KKARVIVGMSGGVDSSVAALLLKEAGYDVIGLFMKNWDDTDENGVCT--------ATEDY 55

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 56  KDVALVAEKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 115

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  +   H    Q+ET        +R   D  ++   LS +    L         P
Sbjct: 116 MDLGADYVAMGHYA--QVETDADGTVHLLRGLDDNKDQTYFLSQLSQDQLKKS----LFP 169

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++  +R    +  ++
Sbjct: 170 LGHLQKSQVREIAEKAGLA 188


>gi|325679373|ref|ZP_08158958.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Ruminococcus albus 8]
 gi|324108970|gb|EGC03201.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Ruminococcus albus 8]
          Length = 513

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 63/190 (33%), Gaps = 34/190 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS  L   L   +        + + I VDH   R+   DE  
Sbjct: 212 IREKVGDGKVLLALSGGVDSSVLAALLSKAVGR------QLTCIFVDHGFMRKNEGDE-- 263

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V+ K          S P+T       E      +E  K  +   +
Sbjct: 264 -VEAAFKDWDINFVRVNAKEQFMSKLRGVSDPETKRKTIGEEFIRVFEAEAKKIGHVDFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-----GLSGMCDTILYDLNLWISRPFLRCRREDI 177
                + D +E+          +  +      + G+ D + +     I  P     +++ 
Sbjct: 323 AQGTIYPDVIES-------GAGDAAVIKSHHNVGGLPDYVDFK---EIIEPLRMLFKDET 372

Query: 178 RSFLLQRNIS 187
           R    +  +S
Sbjct: 373 RKLGQELGLS 382


>gi|229549592|ref|ZP_04438317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255972288|ref|ZP_05422874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T1]
 gi|256956522|ref|ZP_05560693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DS5]
 gi|256963413|ref|ZP_05567584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HIP11704]
 gi|300860987|ref|ZP_07107074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TUSoD Ef11]
 gi|307272736|ref|ZP_07553983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0855]
 gi|312951194|ref|ZP_07770097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0102]
 gi|229305257|gb|EEN71253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255963306|gb|EET95782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis T1]
 gi|256947018|gb|EEU63650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis DS5]
 gi|256953909|gb|EEU70541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis HIP11704]
 gi|300850026|gb|EFK77776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TUSoD Ef11]
 gi|306510350|gb|EFM79373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0855]
 gi|310630859|gb|EFQ14142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0102]
 gi|315034636|gb|EFT46568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0027]
 gi|315143340|gb|EFT87356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX2141]
 gi|315152679|gb|EFT96695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0031]
 gi|315159473|gb|EFU03490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0312]
 gi|315161320|gb|EFU05337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX0645]
 gi|323481203|gb|ADX80642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis 62]
          Length = 374

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHA 114
           + V+ V  ++ I +  V+++             E R                +    ++A
Sbjct: 57  KDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+ET        +R   +  ++   LS +    L         P
Sbjct: 117 MQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGGMEKSEVRAIADRAGLA 189


>gi|313886018|ref|ZP_07819756.1| protein ExsB [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924548|gb|EFR35319.1| protein ExsB [Porphyromonas asaccharolytica PR426713P-I]
          Length = 217

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 64/189 (33%), Gaps = 39/189 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A+SGG DS  LL           + +    A+  D+   +    E+     +C  L I
Sbjct: 5   LIALSGGVDSTTLLY---------EYREEVACAVGFDYG-SKHNARELAAAKAICRELGI 54

Query: 83  AHSVVS-------WKNSKPQTGLMAA-----AREAR-----------YALISEHAKTINA 119
            + ++        +++    +G             R            ++++  A++ + 
Sbjct: 55  PYLIIPLAFIGEYFRSDLLLSGGEMQLGDYSEENMRSTVVPFRNGIMLSILAGLAESRDL 114

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++ A+ F D          R+     MG +    T      + +  P+    + +I +
Sbjct: 115 QQVLIANHFGDHA---IYPDCRESFVTPMGKAITAGTS---NGVKLVAPYTTLTKAEIVA 168

Query: 180 FLLQRNISW 188
              +  + +
Sbjct: 169 RGTRLGVPY 177


>gi|240103159|ref|YP_002959468.1| putative ATPase of the PP-loop superfamily [Thermococcus
           gammatolerans EJ3]
 gi|239910713|gb|ACS33604.1| Predicted ATPase of the PP-loop superfamily [Thermococcus
           gammatolerans EJ3]
          Length = 262

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 39/202 (19%)

Query: 1   MFLSPIESVRFFVRS-LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M    I  +R FVR   +    ILV  SGG DS   L  L           +  SA++  
Sbjct: 1   MLEETISEIRSFVRETSLTDKRILVLFSGGKDSSLTLYLLKE-------AGLDVSALTFF 53

Query: 60  HCLRETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE------------AR 106
           H     +  E +R+      +L + H +V   +        A  R+              
Sbjct: 54  HRW---SWHETLRWAMKFTRKLGVEHYLVDITD---GLLREAVGRKGPVCIHCKRVMLWN 107

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
                  A      ++      +D++    +   +           +    +  + L I 
Sbjct: 108 AKWF---ALNNGFEILAKGDNANDKIIGALLDQCKGD---------IRLCRIPRIGLPIL 155

Query: 167 RPFLRCRREDIRSFLLQRNISW 188
           RP ++   E++     + ++  
Sbjct: 156 RPLIKYTAEEVERLAEEADVRP 177


>gi|24638313|sp|Q8U9M5|MNMA_AGRT5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                I+VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQT--GLMAAAREA--------------RYALISEHA 114
                VC  L I H V+ ++    +T     A A                 ++A +   A
Sbjct: 66  DDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           + + A  + T H         Y+RS+ +      G   +   I  D +            
Sbjct: 126 QELGADALATGH---------YIRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R+   +  +
Sbjct: 177 IDYLRFPLGGLSKAETRALAEEMGL 201


>gi|229822980|ref|ZP_04449050.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271]
 gi|229787793|gb|EEP23907.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271]
          Length = 375

 Score = 59.2 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 59/192 (30%), Gaps = 31/192 (16%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRY 72
              +++ +SGG DS    + L     +      +++          D     TA ++ + 
Sbjct: 5   GKRVVLGMSGGVDSSVAALLLKEQGYEVIGLFMKNWDDT-------DENGHCTATEDYQD 57

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKT 116
           V  V  ++ I +  V+++            RE R                     ++A  
Sbjct: 58  VVKVAEKIGIPYYSVNFEKEYWDRVFEYFLREYRAGRTPNPDVMCNKEVKFKAFLDYAME 117

Query: 117 INATLIMTAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           + A  I   H    ++ E   +   R           +       L   +  P    ++ 
Sbjct: 118 LGADYIAMGHYARSERDENGVVHLLRGLDNNKDQTYFLSQLSQAQLQKALF-PLGHLQKS 176

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  ++
Sbjct: 177 EVRALAEEAGLA 188


>gi|323333610|gb|EGA75003.1| Ncs6p [Saccharomyces cerevisiae AWRI796]
          Length = 150

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R   +   A  +  + ++T H  DD  ETV M   R    +   L      I       I
Sbjct: 21  RRQSLDRGAAKLGISHVVTGHNADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPI 77

Query: 166 SR--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            R  PF    +++I  +     + +            R   R ++++++
Sbjct: 78  KRSKPFKYSYQKEIVLYAHYMKLDYFSTECTYAPEAFRGTAREYMKNLE 126


>gi|323309206|gb|EGA62431.1| Ncs6p [Saccharomyces cerevisiae FostersO]
          Length = 216

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R   +   A  +  + ++T H  DD  ETV M   R    +   L      I       I
Sbjct: 21  RRQSLDRGAAKLGISHVVTGHNADDMAETVLMNILRGDVAR---LEKSTAIITQSSGSPI 77

Query: 166 SR--PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
            R  PF    +++I  +     + +            R   R ++++++
Sbjct: 78  KRSKPFKYSYQKEIVLYAHYMKLDYFSTECTYAPEAFRGTAREYMKNLE 126


>gi|332364140|gb|EGJ41917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK49]
          Length = 373

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 67/198 (33%), Gaps = 41/198 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++    +       A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            T+ A  + T H      DQ E V   +R + +  ++   LS +    L         P 
Sbjct: 117 LTLGADYVATGHYAQVKRDQ-EGVVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----PL 171

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R+   +  ++
Sbjct: 172 GHLEKPEVRAIAERAGLA 189


>gi|332363581|gb|EGJ41362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1059]
          Length = 373

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++  I +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDIDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H      DQ     +   R      ++   LS +    L         P   
Sbjct: 120 GADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----PLGH 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 174 LEKPEVRAIAERAGLA 189


>gi|15678737|ref|NP_275853.1| GMP synthase subunit B [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|2621797|gb|AAB85215.1| GMP synthetase, subunit B [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 311

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 33/199 (16%)

Query: 1   MFLSP---IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           + L+P   IE     +RS V     ++A+SGG DS        SVL+ R+ G    +A+ 
Sbjct: 3   LMLNPSDFIEEAVEEIRSTVGNEKAIIALSGGVDSSV-----ASVLAGRAIGD-NLTAVF 56

Query: 58  VDHC-LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------A 108
           VDH  LRE    E  YV      RL   +   S +  K   G+     E R         
Sbjct: 57  VDHGLLREG---EAEYVRKTFSERLNFRYIDASEEFLKELEGVTDP-EEKRKIIGRVFIE 112

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +    A+ I A  ++      D +E+           +G   S     + + L L I  P
Sbjct: 113 VFERVAEEIGARYLVQGTIAPDWIES-----------EGQIKSHHNVALPHGLVLEIVEP 161

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R   L+  + 
Sbjct: 162 IRELYKDEVREIGLELGLP 180


>gi|325912457|ref|ZP_08174852.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners UPII 143-D]
 gi|325475799|gb|EGC78970.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus iners UPII 143-D]
          Length = 517

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVILGLSGGVDSSVTATLLHRAIGD------QLTAIFVDHGMLRKN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA----AREAR------YALISEHAKTI-NA 119
            V + +   L I  +++    +      +A      R+ +        + +E A+ + + 
Sbjct: 267 QVMAALNKELGI--NIIKVDAADRFLSKLAGVTKPERKRKIIGKEFIEVFNEEAQKLKDI 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  D++  +  P  +  ++++R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTNTAKTIKSHHNVGGLPKDMHFSLIEPLRKLFKDEVRV 378

Query: 180 FLLQRNISW 188
              +  +  
Sbjct: 379 LGEKLGLPH 387


>gi|313113561|ref|ZP_07799149.1| GMP synthase protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310624076|gb|EFQ07443.1| GMP synthase protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 524

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  +    +L A+SGG DS  L   L   +        + + + VDH  L
Sbjct: 208 SFVENNVKALRERIGDGKVLCALSGGVDSSVLAAMLAKAIGK------QLTCVFVDHGLL 261

Query: 63  RETAKDEVRYVSDV----CSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALI 110
           R+  K+EV   S       +   I    V  +        G+    R+ +        + 
Sbjct: 262 RKNEKEEV--CSVFGPGNANGFDINFICVDARERYFAKLAGVTEPERKRKIIGEEFIRVF 319

Query: 111 SEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            E AK I     +     + D +E+     +    +    + G+ DT+ +     +  P 
Sbjct: 320 EEQAKKIGKVDFLAQGTIYPDVVESGL-GGESTVIKSHHNVGGLPDTVDFK---ELVEPL 375

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 376 RNLFKDEVRQAGRELGLP 393


>gi|218460955|ref|ZP_03501046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli Kim 5]
          Length = 353

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 19  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 74

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 75  DDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 134

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+ + + +  G   +      D +            
Sbjct: 135 KELGADALATGH---------YIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQQQ 185

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R    +  +
Sbjct: 186 IDYLRFPLGGLPKAETRRLAEEMGL 210


>gi|332158483|ref|YP_004423762.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus sp. NA2]
 gi|331033946|gb|AEC51758.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus sp. NA2]
          Length = 273

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 18/129 (13%)

Query: 7   ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           E +R  +  ++      +VA SGG DS   L         +    I   A+ VDH     
Sbjct: 39  EKIRRELEEILKEIDRAIVAYSGGKDSTVALYL------AKEKYGIDVEAVLVDHGFMDP 92

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTI 117
            A +  R V+     L +  +++    S                  +    ++ ++A   
Sbjct: 93  RAIENAREVTKY---LGVPLTIIKRDYSDIFREALLKAKSPCRKCSKRTMEILRKYAVEN 149

Query: 118 NATLIMTAH 126
               I+T H
Sbjct: 150 GYKYIITGH 158


>gi|317128230|ref|YP_004094512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473178|gb|ADU29781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 367

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 10  RVVVGMSGGVDSSVAAYLLKQEGYQVIGIFMKNWDDTDEFGVCT--------ATEDYNDV 61

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEHAKTI 117
             VC++L I +  V+++                A R          E ++    +HA ++
Sbjct: 62  IRVCNQLDIPYYAVNFEKEYWDKVFTYFLNEYRAGRTPNPDVMCNKEIKFKAFLDHAMSL 121

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+ +E   +R   +  ++   L+ + +    D    +  P    
Sbjct: 122 GADYVATGHYARVRHSDNGVE--LLRGIDENKDQTYFLNALSE----DQLKHVLFPIGEI 175

Query: 173 RREDIRSFLLQRNIS 187
            +  +R    + +++
Sbjct: 176 EKPRVREIAKEAHLA 190


>gi|21911376|ref|NP_665644.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS315]
 gi|28896748|ref|NP_803098.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes SSI-1]
 gi|25091447|sp|Q8K5H5|MNMA_STRP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21905592|gb|AAM80447.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus
           pyogenes MGAS315]
 gi|28812002|dbj|BAC64931.1| putative tRNA-(5-methylaminomethyl-2- thiouridylate) [Streptococcus
           pyogenes SSI-1]
          Length = 373

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 39/193 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++V +SGG DS    + L         V         +F   +        A ++ + V+
Sbjct: 9   VVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWHDTDEFGVCT--------ATEDYKDVA 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTIN 118
            V  ++ I +  V+++            A  R  R             +    ++A T+ 
Sbjct: 61  AVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLG 120

Query: 119 ATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  + T H      D+  TV  +R   +  ++   LS +    L         P    ++
Sbjct: 121 ADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQK 176

Query: 175 EDIRSFLLQRNIS 187
            ++R    +  ++
Sbjct: 177 SEVREIAERAGLA 189


>gi|160890962|ref|ZP_02071965.1| hypothetical protein BACUNI_03407 [Bacteroides uniformis ATCC 8492]
 gi|270294277|ref|ZP_06200479.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481491|ref|ZP_07940556.1| GMP synthase domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156859183|gb|EDO52614.1| hypothetical protein BACUNI_03407 [Bacteroides uniformis ATCC 8492]
 gi|270275744|gb|EFA21604.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902337|gb|EFV24226.1| GMP synthase domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 435

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   + D+         + V+H L R+   + V
Sbjct: 133 LIRRQVGDRKVLLALSGGVDSSVVAALLLKAIGDK------LVCVHVNHGLMRKGESEAV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
             V      L+     V   +         + P+        E       E  K      
Sbjct: 187 --VEIFGKELKANLIYVDATDRFLSKLENVADPEEKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|110632855|ref|YP_673063.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mesorhizobium sp. BNC1]
 gi|110283839|gb|ABG61898.1| GMP synthase (glutamine-hydrolyzing) [Chelativorans sp. BNC1]
          Length = 519

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 21/191 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R+ V    ++ A+SGG DS    +  H  + +      + + I VDH L R+ 
Sbjct: 209 EQAVDAIRAQVGSGKVICALSGGVDSSVAALLTHEAVGE------QLTCILVDHGLMRKN 262

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKT 116
              EV  VS       +   +V   +           P+       R        E  K 
Sbjct: 263 EAAEV--VSMFREHYNVPLVLVDASDRFLSALEGETDPEKKRKTIGRLFIEVFEDEAKKL 320

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  ++    + D +E+V   S        +        +   +N+ +  P     +++
Sbjct: 321 GGADFLVQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDE 377

Query: 177 IRSFLLQRNIS 187
           +R    +  + 
Sbjct: 378 VRVLGRKLGLP 388


>gi|320451000|ref|YP_004203096.1| GMP synthase (glutamine-hydrolyzing) [Thermus scotoductus SA-01]
 gi|320151169|gb|ADW22547.1| GMP synthase (glutamine-hydrolyzing) [Thermus scotoductus SA-01]
          Length = 503

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 70/211 (33%), Gaps = 37/211 (17%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +ES+   VR  V    +L+AVSGG DS  L + L     +         A+ VDH  LR 
Sbjct: 196 LESLVKEVRERVGEDRVLLAVSGGVDSSTLALLLAKARVNHL-------AVFVDHGLLRL 248

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKT 116
             ++E   V      L +   VV  +       K         R          S+ A+ 
Sbjct: 249 GEREE---VEGALKALGVNLRVVDARERFLTALKGVEDPEEKRRIIGREFVEVFSQVARE 305

Query: 117 IN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +     + D +E+       +     +        +  DL   +  PF    ++
Sbjct: 306 AGPFRFLAQGTLYPDVIES-----AGEPGAAKIKSHHNVGGLPEDLKFELLEPFRLLFKD 360

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRR 206
           ++R   L   +    DP         +R+R 
Sbjct: 361 EVRELALLLGLP---DP---------IRLRH 379


>gi|227497304|ref|ZP_03927536.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833175|gb|EEH65558.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 534

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 31/194 (15%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R+ V  AH++  +SGG DS      +H  + D      + + I VDH  LR   +++V
Sbjct: 222 AIRAQVGDAHVICGLSGGVDSSVAAALVHRAIGD------QLTCIFVDHGLLRAGEREQV 275

Query: 71  RYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAARE-------ARYALISEHA 114
               D  + + I    V             + P+T      RE       A+  +I    
Sbjct: 276 E--QDYAAGMGIRVITVDESERFLSALAGVTDPETKRKIIGREFIRSFEAAQRRVIEMVG 333

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +       +   T   D +E+             +        +  DLN  +  P     
Sbjct: 334 EQGGEIKFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDLNFALIEPLRTLF 388

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 389 KDEVRAIGRELGVP 402


>gi|30248966|ref|NP_841036.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           protein [Nitrosomonas europaea ATCC 19718]
 gi|81584700|sp|Q82VV0|MNMA_NITEU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|30138583|emb|CAD84874.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           protein [Nitrosomonas europaea ATCC 19718]
          Length = 362

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
            + ++V +SGG DS    + L     D +   +K               D   Y      
Sbjct: 3   KSRVVVGMSGGVDSSVAALLLKQQGYDVTGLFMKNW----------EEDDTDEYCSSRQD 52

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
               + V   L I   VV++     +           A R          E ++    +H
Sbjct: 53  FLDAASVADILDIPLEVVNFSTEYRERVFNLFLKEYQAGRTPNPDVLCNSEIKFRAFLDH 112

Query: 114 AKTINATLIMTAHTFDDQL-ETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           A  + A  I T H    Q+ ET    +  +           +       L+  I  P   
Sbjct: 113 ALNLGADWIATGHYA--QVHETDGLFQLLKGEDGNKDQSYFLYRLNQQQLSHTIF-PIGH 169

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  + 
Sbjct: 170 LYKREVRKIAREHRLP 185


>gi|296282204|ref|ZP_06860202.1| GMP synthase [Citromicrobium bathyomarinum JL354]
          Length = 524

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           +R  V  A ++  +SGG DS    I +H  + +      + + + VDH L  +   +   
Sbjct: 220 IREQVGDAKVICGLSGGVDSSVAAILIHEAIGE------QLTCVFVDHGLLRQGEREQVE 273

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
               D      I   VV  +             E +   I          E  +   A  
Sbjct: 274 TMFRD---HYNIPLVVVDAEERFMAGLAGETDPEKKRKFIGGEFINVFEEEANRIGGADF 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 331 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRDLG 387

Query: 182 LQRNIS 187
            +  + 
Sbjct: 388 RELGLP 393


>gi|39934381|ref|NP_946657.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           CGA009]
 gi|39648230|emb|CAE26749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris CGA009]
          Length = 401

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 36/205 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L +   D     ++      DH     R+    A
Sbjct: 11  LEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLY----DHGEAIHRKGACCA 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 67  GQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRDL 126

Query: 111 SEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
              A+ + A+ + T H       DD    +   + RD  +     +   + + +     +
Sbjct: 127 LATARELGASALATGHYVSSRRLDDGSRALVCAADRDRDQSYFLFATTREQLQF-----L 181

Query: 166 SRPFLRCRREDIRSFLLQRNISWCE 190
             P     +   R    Q  +S  +
Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVAD 206


>gi|260495095|ref|ZP_05815224.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
 gi|260197538|gb|EEW95056.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
          Length = 343

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 25/185 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +KD +     VC +
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQYLEENSKD-IEDTKKVCDK 53

Query: 80  LRIAHSVVSWKN---------------SKPQTGLMAAAR-EARYALISEHAKTINATLIM 123
           L I H VV+ +                S            E ++ ++ + A    A  + 
Sbjct: 54  LGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEYVA 113

Query: 124 TAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           T H T  +  E       +         S M   +  +    +  P     +++IR   L
Sbjct: 114 TGHYTSVEYSEIFSKYLLKSVHSIIKDQSYMLYRLSPNKLERLIFPLKYYTKQEIREIAL 173

Query: 183 QRNIS 187
           +  + 
Sbjct: 174 KLGLE 178


>gi|154151861|ref|YP_001405479.1| PP-loop domain-containing protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000413|gb|ABS56836.1| PP-loop domain protein [Methanoregula boonei 6A8]
          Length = 298

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 19/164 (11%)

Query: 32  SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV----- 86
           S GLL  L  ++ +R    I+  AI+VD  +  +          +     I         
Sbjct: 60  SAGLLFFLFGLIRNRR--DIRLCAITVDPGISGS--PVAERARAIAEGHGIPWFTGSLAE 115

Query: 87  ---VSWKNSKPQTGLMAAAREAR---YALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
              ++        G  AAAR  R     L+SE A++   T    A + D+  E  +    
Sbjct: 116 RYGITLDRLIQDEGQDAAARACRVLTTDLLSEIAESHGVTRCAIATSVDEIAEGFFSDLL 175

Query: 141 RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
               E+    +      +    + + RPF+     ++  +    
Sbjct: 176 TGTPEQ----TIFSRKSVGRSGIPVIRPFIEIPAAELERYGQLH 215


>gi|119386805|ref|YP_917860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paracoccus denitrificans PD1222]
 gi|205816904|sp|A1B9H0|MNMA_PARDP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119377400|gb|ABL72164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paracoccus denitrificans PD1222]
          Length = 389

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 74/231 (32%), Gaps = 59/231 (25%)

Query: 13  VRSLVYPA-----HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-- 65
           V SL +P       ++VA+SGG DS  +   L +   D     ++      DH       
Sbjct: 17  VNSLGFPKPPAQTRVVVAMSGGVDSSVVAAMLAAQGYDVIGVTLQLY----DHG--AALA 70

Query: 66  ------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------R 103
                 A  ++     V  R+   H V+ ++N   ++ +   A                 
Sbjct: 71  KKGACCAGQDIHDARRVAERIGFPHYVLDYENKFRESVIEEFADAYLAGATPVPCIRCNE 130

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             ++  + + A+ ++A  + T H             +R    KG  L  M      D + 
Sbjct: 131 RVKFRDLLQTARELDADCMATGH-----------YIRRLMGPKGAELH-MAADPARDQSY 178

Query: 164 WISR-----------PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
           ++             P      + + R+   Q  ++  + P + D  F   
Sbjct: 179 FLFSTTQEQLDFLRFPLGGLASKAETRALAAQYGLAVADKPDSQDICFVPN 229


>gi|327401200|ref|YP_004342039.1| hypothetical protein Arcve_1319 [Archaeoglobus veneficus SNP6]
 gi|327316708|gb|AEA47324.1| Conserved hypothetical protein CHP00268 [Archaeoglobus veneficus
           SNP6]
          Length = 257

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 48/201 (23%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHC 61
           S  E +R  V        + +A SGG DS  L               I+  A++V  D  
Sbjct: 3   SKFEELRKIV-----GDRVAIAFSGGVDSATLAALCRKW-------GIEAIAVTVKTDLM 50

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAK 115
               A  ++     V   + I H +V      P   L    +   Y        I + A+
Sbjct: 51  ----AARDLENAKRVAEEIGIEHVIVEVAV--PDAVLENTPQRCYYCKKTIIKAIKDVAE 104

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP--FLRCR 173
           +    +I      DD      ++  R       GL  + +         +  P       
Sbjct: 105 SRGFRVI-DGTNADD------LKDFRP------GLKALEEE-------GVISPWAMAGFT 144

Query: 174 REDIRSFLLQRNISWCEDPSN 194
           +++IR       +S    PSN
Sbjct: 145 KKEIRRVAKSLGLSVHNRPSN 165


>gi|13626768|sp|O26806|GUAAB_METTH RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
          Length = 308

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 72/193 (37%), Gaps = 30/193 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +RS V     ++A+SGG DS        SVL+ R+ G    +A+ VDH  L
Sbjct: 6   DFIEEAVEEIRSTVGNEKAIIALSGGVDSSV-----ASVLAGRAIGD-NLTAVFVDHGLL 59

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHA 114
           RE    E  YV      RL   +   S +  K   G+     E R         +    A
Sbjct: 60  REG---EAEYVRKTFSERLNFRYIDASEEFLKELEGVTDP-EEKRKIIGRVFIEVFERVA 115

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + I A  ++      D +E+           +G   S     + + L L I  P     +
Sbjct: 116 EEIGARYLVQGTIAPDWIES-----------EGQIKSHHNVALPHGLVLEIVEPIRELYK 164

Query: 175 EDIRSFLLQRNIS 187
           +++R   L+  + 
Sbjct: 165 DEVREIGLELGLP 177


>gi|83952132|ref|ZP_00960864.1| GMP synthase [Roseovarius nubinhibens ISM]
 gi|83837138|gb|EAP76435.1| GMP synthase [Roseovarius nubinhibens ISM]
          Length = 523

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 22/191 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E++R  +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR  
Sbjct: 214 EAIRK-IREQVGDKQVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLN 266

Query: 66  AKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI---- 117
             DEV  V        I          +             R+    L  +  +      
Sbjct: 267 EADEV--VKMFRDHYNIPLIHADESELFLGELDGVSDPETKRKIIGRLFIDVFQKHANSI 324

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 325 DGAEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 381

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 382 VRALGRELGLP 392


>gi|218663598|ref|ZP_03519528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli IE4771]
          Length = 345

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+ + + +  G   +      D +            
Sbjct: 126 KELGADALATGH---------YIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R    +  +
Sbjct: 177 IDYLRFPLGGLPKAETRRLAEEMGL 201


>gi|15679008|ref|NP_276125.1| hypothetical protein MTH990 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2622091|gb|AAB85487.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 338

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 44/197 (22%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S +E V+  +R       I V  SGG+DS  LL     V            A +VD  + 
Sbjct: 5   SKVERVKTALR----GERIAVGFSGGADSTALLDMAADVAD-------TVVAFTVDTGVM 53

Query: 63  -RETAKDEVRYVSDVCSRLRIAHSVV------SWKNSKPQTGLMAAAREARYALISEHAK 115
            R      +   S +   + + H V+      + + +K         +   Y+ I   A 
Sbjct: 54  PRGF----IEGASGIAREIGVEHVVLEMNLLENVEFAKNAADRCFVCKNIIYSSIIREAH 109

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CR 173
                ++    T  D  E                       +L +  L I  P L    +
Sbjct: 110 NRGLDVVADGTTASDMFED-------------------RPGVLVNHLLGIRTPLLDAGMK 150

Query: 174 REDIRSFLLQRNISWCE 190
           R D+  +L  R +++ E
Sbjct: 151 RSDVIEYLRSRGLNYLE 167


>gi|15675922|ref|NP_270096.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes M1 GAS]
 gi|71911653|ref|YP_283203.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS5005]
 gi|14195262|sp|P58075|MNMA_STRP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|13623161|gb|AAK34817.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus
           pyogenes M1 GAS]
 gi|71854435|gb|AAZ52458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS5005]
          Length = 373

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVREIAERAGLA 189


>gi|218295197|ref|ZP_03496033.1| GMP synthase, large subunit [Thermus aquaticus Y51MC23]
 gi|218244400|gb|EED10925.1| GMP synthase, large subunit [Thermus aquaticus Y51MC23]
          Length = 503

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 25/192 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E++   VR  V    +L+AVSGG DS  L + L     D         A+ VDH  LR 
Sbjct: 196 LENLLKEVRERVGSERVLLAVSGGVDSSTLALLLARAGVDHL-------AVFVDHGLLRL 248

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
             ++E   V      L +   VV  K+           P+       R           +
Sbjct: 249 GEREE---VEGALRALGVNLLVVEAKDHFLKALKGVEDPEAKRQVIGRAFVEVFSQVARE 305

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +     + D +E+        +    +        +  DL   +  PF    ++
Sbjct: 306 RGPFHFLAQGTLYPDVIES-----AGGHGAAKIKSHHNVGGLPEDLAFELLEPFRLLFKD 360

Query: 176 DIRSFLLQRNIS 187
           ++R   L   + 
Sbjct: 361 EVRELALLLGLP 372


>gi|160945133|ref|ZP_02092359.1| hypothetical protein FAEPRAM212_02652 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442864|gb|EDP19869.1| hypothetical protein FAEPRAM212_02652 [Faecalibacterium prausnitzii
           M21/2]
          Length = 521

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  +    +L A+SGG DS  L   L   +        + + + VDH  L
Sbjct: 205 SFVENNVKALRERIGEGKVLCALSGGVDSSVLAAMLAKAIGK------QLTCVFVDHGLL 258

Query: 63  RETAKDEVRYVSDV----CSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALI 110
           R+  K+EV   S       +   I    V  ++       G+    R+ +        + 
Sbjct: 259 RKNEKEEV--CSVFGPGNANGFDINFICVDARDRYFSKLKGVTEPERKRKIIGEEFIRVF 316

Query: 111 SEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            E AK I     +     + D +E+     +    +    + G+ DT+ +     +  P 
Sbjct: 317 EEEAKKIGKVDFLAQGTIYPDVVESGL-GGESTVIKSHHNVGGLPDTVDFK---ELVEPL 372

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 373 RNLFKDEVRQAGRELGLP 390


>gi|163757570|ref|ZP_02164659.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Hoeflea phototrophica DFL-43]
 gi|162285072|gb|EDQ35354.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Hoeflea phototrophica DFL-43]
          Length = 523

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + S I VDH L R     +V 
Sbjct: 219 IRDQVGSGKVICALSGGVDSSVAALLIHEAIGD------QLSCILVDHGLMRMNEAADV- 271

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V+       ++  +V   +         + P+T      R        E  K   A  +
Sbjct: 272 -VAMFREHYNLSLKLVDASDRFISQLEGEADPETKRKTIGRLFIEVFEEEAKKIGGADFL 330

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 331 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRVLGR 387

Query: 183 QRNIS 187
           +  + 
Sbjct: 388 ELGLP 392


>gi|225174283|ref|ZP_03728282.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225170068|gb|EEG78863.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 435

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 32/203 (15%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + +E     VR  V    +L+A+SGG DS  +   L   +        +   + V+H 
Sbjct: 123 MKNFVEDQVELVRKQVGDKKVLLALSGGVDSSVVAALLIKAIGK------QLVCVHVNHG 176

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALIS 111
           L R+   + V  V    ++L      V             S P+        E       
Sbjct: 177 LMRKNESEAVVEVFK--NQLDANLIYVDASERFLNKLANVSDPEEKRKVIGTEFIRVFEE 234

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRP 168
           E  K      +     + D +E            K   +         +  DL   +  P
Sbjct: 235 EARKLEGIDFLAQGTIYPDIVE---------SGTKTASVVKSHHNVGGLPEDLQFSLVEP 285

Query: 169 FLRCRREDIRSFLLQRNISWCED 191
                ++++R+  ++  +   ED
Sbjct: 286 LYHLFKDEVRACGIELGLP--ED 306


>gi|329962135|ref|ZP_08300146.1| GMP synthase domain protein [Bacteroides fluxus YIT 12057]
 gi|328530783|gb|EGF57641.1| GMP synthase domain protein [Bacteroides fluxus YIT 12057]
          Length = 435

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   + D      K   + V+H L R+   + V
Sbjct: 133 LIRRQVGDRKVLLALSGGVDSSVVAALLLKAIGD------KLVCVHVNHGLMRKGESEAV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
             V      L+     V   +         + P+        E       E  K      
Sbjct: 187 --VEIFGKELKANLIYVDATDRFLSKLENVADPEQKRKIIGGEFIRVFEEEARKLDGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|306826439|ref|ZP_07459751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
 gi|304431369|gb|EFM34366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
          Length = 378

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 13  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 65  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 124

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 125 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 180

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 181 KSEVREIAERAGLA 194


>gi|205829103|sp|Q1J988|MNMA_STRPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829104|sp|Q1JJD5|MNMA_STRPC RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVREIAERAGLA 189


>gi|205829100|sp|Q48QM8|MNMA_STRPM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVREIAERAGLA 189


>gi|187924407|ref|YP_001896049.1| GMP synthase [Burkholderia phytofirmans PsJN]
 gi|226738408|sp|B2T5G8|GUAA_BURPP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187715601|gb|ACD16825.1| GMP synthase, large subunit [Burkholderia phytofirmans PsJN]
          Length = 527

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 33/192 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H+++ +SGG DS      LH  + D      + + + VDH  LR     E  
Sbjct: 216 IREQVGNEHVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     L +   V+    S+           P+        E      +E  +  +A
Sbjct: 267 QVMATFADHLGVK--VIHVDASEVFLRKLAGVTDPEAKRKIIGAEFVEVFQAEAGRLTDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRRED 176
             +     + D +E+          +KG            +   LNL +  P     +++
Sbjct: 325 KWLAQGTIYPDVIESA------GKGKKGAQTIKSHHNVGGLPETLNLKLLEPLRELFKDE 378

Query: 177 IRSFLLQRNISW 188
           +R   ++  +  
Sbjct: 379 VRELGVKLGLPP 390


>gi|94989481|ref|YP_597582.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS9429]
 gi|94993368|ref|YP_601467.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS2096]
 gi|94542989|gb|ABF33038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS9429]
 gi|94546876|gb|ABF36923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS2096]
          Length = 379

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 14  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 126 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 181

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 182 KSEVREIAERAGLA 195


>gi|50915203|ref|YP_061175.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS10394]
 gi|94995352|ref|YP_603450.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS10750]
 gi|50904277|gb|AAT87992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS10394]
 gi|94548860|gb|ABF38906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS10750]
          Length = 379

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 14  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 126 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 181

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 182 KSEVREIAERAGLA 195


>gi|71904534|ref|YP_281337.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS6180]
 gi|71803629|gb|AAX72982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes MGAS6180]
          Length = 379

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 14  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 126 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 181

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 182 KSEVREIAERAGLA 195


>gi|139474609|ref|YP_001129325.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes str.
           Manfredo]
 gi|68053070|sp|Q5X9C1|MNMA_STRP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235086|sp|A2RH05|MNMA_STRPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829106|sp|Q1J455|MNMA_STRPF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134272856|emb|CAM31137.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pyogenes str. Manfredo]
          Length = 373

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVREIAERAGLA 189


>gi|56808669|ref|ZP_00366393.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus pyogenes M49 591]
          Length = 299

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 13  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 65  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 124

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 125 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 180

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 181 KSEVREIAERAGLA 194


>gi|205822121|sp|Q6NA79|MNMA_RHOPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 397

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 36/205 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L +   D     ++      DH     R+    A
Sbjct: 7   LEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLY----DHGEAIHRKGACCA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 63  GQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRDL 122

Query: 111 SEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
              A+ + A+ + T H       DD    +   + RD  +     +   + + +     +
Sbjct: 123 LATARELGASALATGHYVSSRRLDDGSRALVCAADRDRDQSYFLFATTREQLQF-----L 177

Query: 166 SRPFLRCRREDIRSFLLQRNISWCE 190
             P     +   R    Q  +S  +
Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVAD 202


>gi|317056278|ref|YP_004104745.1| GMP synthase large subunit [Ruminococcus albus 7]
 gi|315448547|gb|ADU22111.1| GMP synthase, large subunit [Ruminococcus albus 7]
          Length = 513

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 34/190 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS  L   L   +        + + I VDH   R+   DE  
Sbjct: 212 IREKVGDGKVLLALSGGVDSSVLAALLSKAVGR------QLTCIFVDHGFMRKNEGDE-- 263

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V+ K          S P+T       E      +E  K      +
Sbjct: 264 -VEAAFKDWDINFVRVNAKEQFMGKLRGVSDPETKRKTIGEEFIRVFEAEAKKIGKVDFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGM-----GLSGMCDTILYDLNLWISRPFLRCRREDI 177
                + D +E+          +  +      + G+ D + +     I  P     +++ 
Sbjct: 323 AQGTIYPDVIES-------GAGDAAVIKSHHNVGGLPDHVDFK---EIIEPLRMLFKDET 372

Query: 178 RSFLLQRNIS 187
           R    +  +S
Sbjct: 373 RKLGQELGLS 382


>gi|260662339|ref|ZP_05863234.1| GMP synthase [Lactobacillus fermentum 28-3-CHN]
 gi|260553030|gb|EEX25973.1| GMP synthase [Lactobacillus fermentum 28-3-CHN]
          Length = 517

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  + D      + + I VDH  LR+   D V 
Sbjct: 216 IRQTVGDKKVILGLSGGVDSSVTAVLIHKAIGD------QLTCIFVDHGLLRKNEADSVM 269

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
               + + L +    V   +         S P+       +E       E  K  +A  +
Sbjct: 270 --KALSADLGVNIIKVDAADRFLGKLKGISDPEQKRKTIGKEFVAVFDEEAKKMKDADFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +   +   +  P     +++ R    
Sbjct: 328 AQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEKMGFKLIEPLRSLFKDETRQLGE 381

Query: 183 QRNISW 188
           +  I  
Sbjct: 382 KLGIPH 387


>gi|227515348|ref|ZP_03945397.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus fermentum ATCC
           14931]
 gi|227086262|gb|EEI21574.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus fermentum ATCC
           14931]
          Length = 520

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  + D      + + I VDH  LR+   D V 
Sbjct: 219 IRQTVGDKKVILGLSGGVDSSVTAVLIHKAIGD------QLTCIFVDHGLLRKNEADSVM 272

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
               + + L +    V   +         S P+       +E       E  K  +A  +
Sbjct: 273 --KALSADLGVNIIKVDAADRFLGKLKGISDPEQKRKTIGKEFVAVFDEEAKKMKDADFL 330

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +   +   +  P     +++ R    
Sbjct: 331 AQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEKMGFKLIEPLRSLFKDETRQLGE 384

Query: 183 QRNISW 188
           +  I  
Sbjct: 385 KLGIPH 390


>gi|170290101|ref|YP_001736917.1| ExsB family protein [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174181|gb|ACB07234.1| ExsB family protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 260

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 62/176 (35%), Gaps = 36/176 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A+SGG DS  L      +L D++       A++V   L+    +E+     V   + 
Sbjct: 16  VIIALSGGLDSSTLAALCKKLLGDKAI------AVTVASELQPE--EEIEGARRVAEEIG 67

Query: 82  IAHSVVSW-----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           I H ++       + ++         ++A +  I E A+ +    I       D      
Sbjct: 68  IRHILIEVSLLKEEVARNGPDRCYHCKKAMFRRIRELAEELGVREIFDGTNASD------ 121

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCE 190
                     G+G             L I  P+  L  R+E+IR       +S  E
Sbjct: 122 ------SWRPGIGAL---------RELGIRSPWAELGFRKEEIREIARNLGLSVSE 162


>gi|307719725|ref|YP_003875257.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Spirochaeta thermophila DSM 6192]
 gi|306533450|gb|ADN02984.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Spirochaeta thermophila DSM 6192]
          Length = 352

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 61/185 (32%), Gaps = 28/185 (15%)

Query: 25  AVSGGSDSMGLLIALHSV-LSDRSFGKIKF-SAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           A+SGG DS      L S  +       I+  +   VDH   E   +E R   +V S L I
Sbjct: 2   AMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAEVDH---EGFSEEARAAREVASHLGI 58

Query: 83  AHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAKT-INATLIMTA 125
            H V++  +      L  A  E R                +  +  +A+  + A  I T 
Sbjct: 59  EHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLCNRTLKFGHLVRYAREVLRADGIATG 118

Query: 126 HTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           H      D  E       R  A        +  T   DL      P     +++IR++  
Sbjct: 119 HYARIYVD-AEGGV-HLMRGKAGTKEQSYFLAQTRPEDLRHAYF-PLGDQTKDEIRTYAR 175

Query: 183 QRNIS 187
              I 
Sbjct: 176 HHGIP 180


>gi|225016206|ref|ZP_03705398.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum
           DSM 5476]
 gi|224951028|gb|EEG32237.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum
           DSM 5476]
          Length = 352

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 48/213 (22%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-----------DEVRY 72
           + +SGG DS      L     +      +          +               D++  
Sbjct: 2   IGMSGGVDSSVAAALLIEQGYEVVGATFRL--------WKPEDDLFDSEATCCSLDDIND 53

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
             +VC +L I H V++ K    +  +        A R          + ++    + A  
Sbjct: 54  AREVCHQLGIPHYVLNLKREFKEAVVQNFVEEYQAGRTPNPCIVCNQKIKFDYFYQKAAA 113

Query: 117 INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           +    + T H      ++Q E     +     ++   L G    I Y     I  P    
Sbjct: 114 LGFDYVATGHYARIEQNEQGEFQLKTAAYAQKDQSYFLYG----IPYPNLGHILFPLGGY 169

Query: 173 RREDIRSFLLQRN--ISWCEDPSNTDDRF-ERV 202
            +  +R    +    +S   D    +  F +R 
Sbjct: 170 TKPQVRELAEKYGFSVSHKRDS--QEICFVDRN 200


>gi|298244268|ref|ZP_06968074.1| PP-loop domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297551749|gb|EFH85614.1| PP-loop domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 293

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 63/200 (31%), Gaps = 54/200 (27%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++  +R +     +LVA SGG DS  LL   H VL DR+ G I  SA          A
Sbjct: 24  ERLQEILREM---ESVLVAYSGGVDSALLLKVAHDVLGDRALGAIASSAAY--------A 72

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA----------------LI 110
            +E +   +V +++ +    +     + +          RYA                 +
Sbjct: 73  PEETQEAIEVATQMSLPLVTLETHELEDE----------RYASNTVQRCYFCKTELFTSL 122

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              AK  N   I      DD                G    G      + +   +     
Sbjct: 123 EPVAKEHNLRHIAYGVNKDD---------------DGDFRPGQKAAREFGVRGPLKE--A 165

Query: 171 RCRREDIRSFLLQRNISWCE 190
              +++IR+      +   +
Sbjct: 166 EMGKKEIRAIAKMLGMPVWD 185


>gi|192289904|ref|YP_001990509.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           TIE-1]
 gi|192283653|gb|ACF00034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris TIE-1]
          Length = 401

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 36/205 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L +   D     ++      DH     R+    A
Sbjct: 11  LEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLY----DHGEAIHRKGACCA 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 67  GQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRDL 126

Query: 111 SEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
              A+ + A+ + T H       DD    +   + RD  +     +   + + +     +
Sbjct: 127 LATARELGASALATGHYVSSRRLDDGSRALVCAADRDRDQSYFLFATTREQLQF-----L 181

Query: 166 SRPFLRCRREDIRSFLLQRNISWCE 190
             P     +   R    Q  +S  +
Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVAD 206


>gi|126460328|ref|YP_001056606.1| GMP synthase [Pyrobaculum calidifontis JCM 11548]
 gi|126250049|gb|ABO09140.1| GMP synthase (glutamine-hydrolyzing) [Pyrobaculum calidifontis JCM
           11548]
          Length = 505

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 24/192 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           +E +   +R       +++ VSGG DS    + ++  + +R+       A+ +DH L RE
Sbjct: 197 VERLVKEIRERATAGDVIIGVSGGVDSTVTAVLVYKAVGERAK------AVFIDHGLFRE 250

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAR----EARYALISEHAK 115
               E   V ++   + +    V  +       +  +      R              AK
Sbjct: 251 G---EPERVVELLKSIGLEVYYVDARERFLSKLEGVSDCEEKRRIVGETFAEVFTEALAK 307

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             NA  +     + D +E+             +        +     L +  P     ++
Sbjct: 308 FPNAKYLAQGTLYPDVVES-----GAVKGADRIKSHHNVGGLPPWFKLELIEPLREFYKD 362

Query: 176 DIRSFLLQRNIS 187
           ++R       + 
Sbjct: 363 EVRRLAKALGLP 374


>gi|222624284|gb|EEE58416.1| hypothetical protein OsJ_09614 [Oryza sativa Japonica Group]
          Length = 410

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 50/225 (22%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +     +   P  + V VSGG DS   L  LH+     +   +K          +E  
Sbjct: 65  ERLLRCAAAGRAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIW-------FQEDF 117

Query: 67  ---------KDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------- 106
                     D+++Y   VC ++ +   VV   +       + ++   R  R        
Sbjct: 118 RNFWSECPWDDDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLC 177

Query: 107 -----YALISEHAKTINATLIMTAHTFD------DQLE--TVYMRSQRDYAEKGMGLSGM 153
                +    E  + +    I + H         D +E  +V   S+    ++   LS +
Sbjct: 178 NTRIKFGAFLEAIENLGFDYIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHL 237

Query: 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             T L      +  P     ++++R    Q ++       N D +
Sbjct: 238 SQTQLRR----LLFPLGCITKDEVRRLAAQMDLP------NQDRK 272


>gi|222084579|ref|YP_002543108.1| GMP synthase - glutamine amidotransferase protein [Agrobacterium
           radiobacter K84]
 gi|254799665|sp|B9J7L1|GUAA_AGRRK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|221722027|gb|ACM25183.1| GMP synthase - glutamine amidotransferase protein [Agrobacterium
           radiobacter K84]
          Length = 520

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 23/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE 
Sbjct: 215 AIRDQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEA 265

Query: 71  RYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINAT 120
             V  + S    L + H   S +        S P+T      R        E  K   A 
Sbjct: 266 ANVVAMFSEHYNLHLLHVDASERFIGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGAD 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   +N+ +  P     ++++R+ 
Sbjct: 326 FLGQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRAL 382

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 383 GKELGLP 389


>gi|160939548|ref|ZP_02086897.1| hypothetical protein CLOBOL_04441 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437499|gb|EDP15262.1| hypothetical protein CLOBOL_04441 [Clostridium bolteae ATCC
           BAA-613]
          Length = 433

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 28/189 (14%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   +        + + + V+H L R+    E 
Sbjct: 131 LIRQQVGDRKVLLALSGGVDSSVVAALLIKAIGK------QLTCVHVNHGLMRKG---ES 181

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
             V DV  + ++  ++V         G +A              E       E  K    
Sbjct: 182 ESVIDV-FKNQMDANLVYVDAVDRFLGKLAGVADPEQKRKIIGAEFIRVFEEEARKLEGI 240

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  DLN  +  P  +  ++++R+
Sbjct: 241 EFLAQGTIYPDIVE------SGTKTAKVVKSHHNVGGLPEDLNFTLVEPLRQLFKDEVRA 294

Query: 180 FLLQRNISW 188
             L+  +  
Sbjct: 295 CGLELGLPH 303


>gi|209560263|ref|YP_002286735.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes NZ131]
 gi|229487429|sp|B5XJA6|MNMA_STRPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209541464|gb|ACI62040.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Streptococcus pyogenes NZ131]
          Length = 373

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  +   +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVKRDENGKVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVREIAERAGLA 189


>gi|209550765|ref|YP_002282682.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|226704775|sp|B5ZNK8|MNMA_RHILW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209536521|gb|ACI56456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 399

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+ + + +  G   +      D +            
Sbjct: 126 KELGADALATGH---------YIRSRPNPSPEHPGRRALYRPADADRDQSYFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R    +  +
Sbjct: 177 IDYLRFPLGGLPKAETRRLAEEMGL 201


>gi|19747021|ref|NP_608157.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes
           MGAS8232]
 gi|19749279|gb|AAL98656.1| tRNA-methyltransferase [Streptococcus pyogenes MGAS8232]
          Length = 379

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 14  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +     +A T+
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTL 125

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 126 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 181

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 182 KSEVREIAERAGLA 195


>gi|24638305|sp|Q8NZ00|MNMA_STRP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +     +A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVREIAERAGLA 189


>gi|121602609|ref|YP_988663.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bartonella bacilliformis KC583]
 gi|226738390|sp|A1URR0|GUAA_BARBK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120614786|gb|ABM45387.1| GMP synthase [Bartonella bacilliformis KC583]
          Length = 518

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 30/191 (15%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDE 69
             +R  V    ++  +SGG DS    + LH  + D      + + I VDH L R+   +E
Sbjct: 213 AAIREKVGKNRVICGLSGGVDSSVTAVLLHEAIGD------QLTCIFVDHGLIRKNEAEE 266

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINAT 120
           V  +        I    V+  +         + P+       R        E  K   A 
Sbjct: 267 VLKLFR--DNYNIELIHVNAADMFINALEGETDPEKKRKTIGRLFIEVFEEETKKIGGAK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRRED 176
            +     + D +E+V        +  G  +          +   +N+ +  P     ++D
Sbjct: 325 FLAQGTLYPDVIESV--------SAIGEAITIKSHHNVGGLPERMNMKLVEPLRELFKDD 376

Query: 177 IRSFLLQRNIS 187
           +RS   +  + 
Sbjct: 377 VRSLGRELGLP 387


>gi|300855847|ref|YP_003780831.1| hypothetical protein CLJU_c26710 [Clostridium ljungdahlii DSM
           13528]
 gi|300435962|gb|ADK15729.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
          Length = 272

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 46/201 (22%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +E ++  +R++      ++A SGG DS  LL   H +L D      K  A++       
Sbjct: 7   KLEDLKENLRNIKSG---VIAFSGGVDSTFLLKIAHDILED------KVIAVT------A 51

Query: 65  TA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHA 114
            +    K E+         + + H ++  +        +         ++  ++ + E A
Sbjct: 52  ASSTYPKRELDEAKKYAKSIGVRHLIIESEELDIKGYKENPVDRCYYCKKELFSKLKEIA 111

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRC 172
           K  N   ++     DD                G    GM         L I  P      
Sbjct: 112 KENNVAYVLDGANLDD---------------TGDFRPGMKA----AKELGILSPLKEAEL 152

Query: 173 RREDIRSFLLQRNISWCEDPS 193
            +EDIR+   +  +     PS
Sbjct: 153 TKEDIRNLSKRIGLPTWNKPS 173


>gi|237709041|ref|ZP_04539522.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|265755532|ref|ZP_06090153.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229457103|gb|EEO62824.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234138|gb|EEZ19731.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 435

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   + +          + V+H L R+   + V
Sbjct: 133 LIRRQVGDKKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEAV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V   +         + P+        E       E  K      
Sbjct: 187 IEVFK--NQLNANLIYVDATDRFLSKLENVADPEQKRKIIGGEFIRVFEEEARKLNGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|212692102|ref|ZP_03300230.1| hypothetical protein BACDOR_01597 [Bacteroides dorei DSM 17855]
 gi|237724624|ref|ZP_04555105.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|212665494|gb|EEB26066.1| hypothetical protein BACDOR_01597 [Bacteroides dorei DSM 17855]
 gi|229436819|gb|EEO46896.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 435

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   + +          + V+H L R+   + V
Sbjct: 133 LIRRQVGDKKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEAV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V   +         + P+        E       E  K      
Sbjct: 187 IEVFK--NQLNANLIYVDATDRFLSKLENVADPEQKRKIIGGEFIRVFEEEARKLNGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|150006079|ref|YP_001300823.1| putative GMP synthase [Bacteroides vulgatus ATCC 8482]
 gi|254883447|ref|ZP_05256157.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319641766|ref|ZP_07996447.1| GMP synthase 2 [Bacteroides sp. 3_1_40A]
 gi|149934503|gb|ABR41201.1| putative GMP synthase [Bacteroides vulgatus ATCC 8482]
 gi|254836240|gb|EET16549.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386600|gb|EFV67498.1| GMP synthase 2 [Bacteroides sp. 3_1_40A]
          Length = 435

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   + +          + V+H L R+   + V
Sbjct: 133 LIRRQVGDKKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEAV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V   +         + P+        E       E  K      
Sbjct: 187 IEVFK--NQLNANLIYVDATDRFLSKLENVADPEQKRKIIGGEFIRVFEEEARKLNGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|308234263|ref|ZP_07665000.1| GMP synthase, large subunit [Atopobium vaginae DSM 15829]
 gi|328943814|ref|ZP_08241279.1| GMP synthase [Atopobium vaginae DSM 15829]
 gi|327491783|gb|EGF23557.1| GMP synthase [Atopobium vaginae DSM 15829]
          Length = 538

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 28/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +++A+SGG DS  +   +H  +        + + + V+H  LR+    E  
Sbjct: 222 IRARVGDKKVILALSGGVDSSVVAALVHRAIGK------QLTCVFVNHGLLRKG---EPE 272

Query: 72  YVSDVCSR-LRIAHSVVSWKNSKPQTGLM--AAAREARYA--------LISEHAKTINAT 120
            V +V  +   +    V  +  +    L   +   E R             +  K  +  
Sbjct: 273 LVEEVFRKQFDVDLVHVHAE-ERYAKLLEGVSEPEEKRKRIGTEFWKVFFEQAQKIGDVQ 331

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRREDIR 178
            +     + D +E+      R    K   +    + I +   +   +  P     ++++R
Sbjct: 332 FLAQGTIYPDIIES----GARKTGGKASTIKSHHNLIPFPEGIHFDLIEPLDHFFKDEVR 387

Query: 179 SFLLQRNIS 187
              L   + 
Sbjct: 388 ELGLALGLP 396


>gi|218192183|gb|EEC74610.1| hypothetical protein OsI_10221 [Oryza sativa Indica Group]
          Length = 488

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 50/225 (22%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +     +   P  + V VSGG DS   L  LH+     +   +K          +E  
Sbjct: 65  ERLLRCAAAGRAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIW-------FQEDF 117

Query: 67  ---------KDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------- 106
                     D+++Y   VC ++ +   VV   +       + ++   R  R        
Sbjct: 118 RNFWSECPWDDDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLC 177

Query: 107 -----YALISEHAKTINATLIMTAHTFD------DQLE--TVYMRSQRDYAEKGMGLSGM 153
                +    E  + +    I + H         D +E  +V   S+    ++   LS +
Sbjct: 178 NTRIKFGAFLEAIENLGFDYIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHL 237

Query: 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             T L      +  P     ++++R    Q ++       N D +
Sbjct: 238 SQTQLRR----LLFPLGCITKDEVRRLAAQMDLP------NQDRK 272


>gi|50955510|ref|YP_062798.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|81390598|sp|Q6AD51|GUAA_LEIXX RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|50951992|gb|AAT89693.1| GMP synthetase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 503

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 23/191 (12%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE 69
             +R+ V    +L A+SGG DS      +H  + D      +   + VDH  LR   +DE
Sbjct: 190 AAIRAQVGSGRVLCALSGGVDSAVAAALVHKAIGD------QLVCVFVDHGLLR---RDE 240

Query: 70  VRYVSD-VCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            R V +   S   +    V  +     +        A R+          +   A L+  
Sbjct: 241 ARQVQEDYVSATGVRLITVDAEEQFLAALESVSDPEAKRKIIGREFIRVFERAQADLVAE 300

Query: 125 AHTFDDQLE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRRED 176
           A +  D +      T+Y          G            +  DL   +  P     +++
Sbjct: 301 AASEGDPIRFLVQGTLYPDVVESGGGAGTANIKSHHNVSGLPEDLQFELVEPLCTLFKDE 360

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 361 VRAIGRELGLP 371


>gi|42527224|ref|NP_972322.1| GMP synthase [Treponema denticola ATCC 35405]
 gi|50400363|sp|Q73LZ4|GUAA_TREDE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|41817648|gb|AAS12233.1| GMP synthase [Treponema denticola ATCC 35405]
          Length = 523

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 45/201 (22%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E+++  V++ V    +L+A+SGG DS  L   L+  +          + I VDH L R+ 
Sbjct: 217 EAIKD-VQNTVKDGKVLLALSGGVDSSVLAALLNRAVGK------NLTCIFVDHGLMRKN 269

Query: 66  AKDEVR-----------YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
             DEV             V+     L      VS    K +       R     +  E A
Sbjct: 270 EGDEVEAAFRDTPMNFIRVNAESRFLG-KLKGVSDPEKKRKIIGEEFIR-----VFEEEA 323

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS-------GMCDTILYDLNLWIS 166
           + I     +     + D +E            KG  +        G+ D I +     + 
Sbjct: 324 EKIGTVDFLAQGTIYADVVE---------SGTKGSAVIKSHHNVGGLPDHISFKS---LI 371

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     +++IR+   +  + 
Sbjct: 372 EPLKTLFKDEIRNLGTELGLP 392


>gi|145636328|ref|ZP_01791997.1| pyridoxine kinase [Haemophilus influenzae PittHH]
 gi|145270493|gb|EDK10427.1| pyridoxine kinase [Haemophilus influenzae PittHH]
          Length = 156

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 281 LPGYRSMERVM---LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTV 337
           +P  R + +++   +F K        +   VI R  + L++T+   +L    L  E+ T+
Sbjct: 1   MPSKRQLTQLINDVVFAKEEANPQFQLVNKVIRRYQDSLYLTKPFSDLTKYCLKLEQNTL 60

Query: 338 WDGRYQFQNLSDSLIQIGPQSYRKADV 364
                   NL D+L  +  Q      +
Sbjct: 61  --------NLPDNLGNLTVQENEHNLI 79


>gi|238923030|ref|YP_002936543.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Eubacterium rectale ATCC 33656]
 gi|259647682|sp|C4ZCQ4|GUAA_EUBR3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|238874702|gb|ACR74409.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Eubacterium rectale ATCC 33656]
          Length = 524

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS  L   L   +        + + + VDH  LR+   DEV 
Sbjct: 209 IREQVGDGKVLLALSGGVDSSVLAALLAKAIGK------QLTCVFVDHGLLRKNEGDEVE 262

Query: 72  YV 73
            V
Sbjct: 263 GV 264


>gi|240139683|ref|YP_002964160.1| GMP synthetase (glutamine aminotransferase) [Methylobacterium
           extorquens AM1]
 gi|254562094|ref|YP_003069189.1| GMP synthetase [Methylobacterium extorquens DM4]
 gi|240009657|gb|ACS40883.1| GMP synthetase (glutamine aminotransferase) [Methylobacterium
           extorquens AM1]
 gi|254269372|emb|CAX25338.1| GMP synthetase (glutamine aminotransferase) [Methylobacterium
           extorquens DM4]
          Length = 521

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R    DEV 
Sbjct: 217 IREQVGKEKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLMRLGEGDEV- 269

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V  ++           P+       R       +E  K   A  +
Sbjct: 270 -VRLFRDHYNIPLVHVQAQDLFIGALEGVDDPEVKRKTIGRLFIDVFEAEAGKIGGAAFL 328

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 329 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRLLGK 385

Query: 183 QRNIS 187
           +  + 
Sbjct: 386 ELGLP 390


>gi|163852348|ref|YP_001640391.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Methylobacterium extorquens PA1]
 gi|163663953|gb|ABY31320.1| GMP synthase, large subunit [Methylobacterium extorquens PA1]
          Length = 521

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R    DEV 
Sbjct: 217 IREQVGKEKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLMRLGEGDEV- 269

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V  ++           P+       R       +E  K   A  +
Sbjct: 270 -VRLFRDHYNIPLVHVQAQDLFIGALEGVDDPEVKRKTIGRLFIDVFEAEAGKIGGAAFL 328

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 329 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRLLGK 385

Query: 183 QRNIS 187
           +  + 
Sbjct: 386 ELGLP 390


>gi|284998645|ref|YP_003420413.1| GMP synthase (glutamine-hydrolyzing) [Sulfolobus islandicus
           L.D.8.5]
 gi|284446541|gb|ADB88043.1| GMP synthase (glutamine-hydrolyzing) [Sulfolobus islandicus
           L.D.8.5]
          Length = 367

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF   S ++ +   ++  V    +L AVSGG DS    +  +++L ++    +      +
Sbjct: 1   MFDPASFVKEIGPQLKQKVGNERVLAAVSGGVDSTTAAVLAYNLLGNKVIPVL------I 54

Query: 59  DHC-LRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAA-----REARYA 108
           D   LR+    E   +    S + + + +V  +     S+ +    A A     RE  Y+
Sbjct: 55  DTGFLRKN---EAEKIKAYLSNV-LPNLIVVDERETFTSEIEGMEEAEAKRKKFRELFYS 110

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            IS   +  NA  +M      D +ET     Q     +   L  +      +    +  P
Sbjct: 111 SISSLMRKFNAKYLMQGTIAADWVET-----QGGIKTQHNVLVQIGIDTEKEWGFTLIEP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R       + 
Sbjct: 166 LADLYKNEVRELARYLKLP 184


>gi|227831147|ref|YP_002832927.1| GMP synthase domain protein [Sulfolobus islandicus L.S.2.15]
 gi|259647669|sp|C3MJX9|GUAAB_SULIL RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|227457595|gb|ACP36282.1| GMP synthase domain protein [Sulfolobus islandicus L.S.2.15]
          Length = 367

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF   S ++ +   ++  V    +L AVSGG DS    +  +++L ++    +      +
Sbjct: 1   MFDPASFVKEIGPQLKQKVGNERVLAAVSGGVDSTTAAVLAYNLLGNKVIPVL------I 54

Query: 59  DHC-LRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAA-----REARYA 108
           D   LR+    E   +    S + + + +V  +     S+ +    A A     RE  Y+
Sbjct: 55  DTGFLRKN---EAEKIKAYLSNV-LPNLIVVDERETFTSEIEGMEEAEAKRKKFRELFYS 110

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            IS   +  NA  +M      D +ET     Q     +   L  +      +    +  P
Sbjct: 111 SISSLMRKFNAKYLMQGTIAADWVET-----QGGIKTQHNVLVQIGIDTEKEWGFTLIEP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R       + 
Sbjct: 166 LADLYKNEVRELARYLKLP 184


>gi|227828391|ref|YP_002830171.1| GMP synthase domain protein [Sulfolobus islandicus M.14.25]
 gi|229580032|ref|YP_002838432.1| GMP synthase domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581307|ref|YP_002839706.1| GMP synthase domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|229585620|ref|YP_002844122.1| GMP synthase domain protein [Sulfolobus islandicus M.16.27]
 gi|238620583|ref|YP_002915409.1| GMP synthase domain protein [Sulfolobus islandicus M.16.4]
 gi|259647667|sp|C3N0R9|GUAAB_SULIA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|259647668|sp|C4KJU6|GUAAB_SULIK RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|259647670|sp|C3MRT0|GUAAB_SULIM RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|259647671|sp|C3NMG4|GUAAB_SULIN RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|259647672|sp|C3N905|GUAAB_SULIY RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|227460187|gb|ACP38873.1| GMP synthase domain protein [Sulfolobus islandicus M.14.25]
 gi|228010748|gb|ACP46510.1| GMP synthase domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012023|gb|ACP47784.1| GMP synthase domain protein [Sulfolobus islandicus Y.N.15.51]
 gi|228020670|gb|ACP56077.1| GMP synthase domain protein [Sulfolobus islandicus M.16.27]
 gi|238381653|gb|ACR42741.1| GMP synthase domain protein [Sulfolobus islandicus M.16.4]
 gi|323475464|gb|ADX86070.1| GMP synthase domain protein [Sulfolobus islandicus REY15A]
 gi|323478186|gb|ADX83424.1| GMP synthase domain protein [Sulfolobus islandicus HVE10/4]
          Length = 367

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF   S ++ +   ++  V    +L AVSGG DS    +  +++L ++    +      +
Sbjct: 1   MFDPASFVKEIGPQLKQKVGNERVLAAVSGGVDSTTAAVLAYNLLGNKVIPVL------I 54

Query: 59  DHC-LRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAA-----REARYA 108
           D   LR+    E   +    S + + + +V  +     S+ +    A A     RE  Y+
Sbjct: 55  DTGFLRKN---EAEKIKAYLSNV-LPNLIVVDERETFTSEIEGMEEAEAKRKKFRELFYS 110

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            IS   +  NA  +M      D +ET     Q     +   L  +      +    +  P
Sbjct: 111 SISSLMRKFNAKYLMQGTIAADWVET-----QGGIKTQHNVLVQIGIDTEKEWGFTLIEP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R       + 
Sbjct: 166 LADLYKNEVRELARYLKLP 184


>gi|167044130|gb|ABZ08813.1| putative PP-loop family protein [uncultured marine crenarchaeote
           HF4000_APKG5C13]
          Length = 267

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 37/182 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSRL 80
           ILVA+SGG DS     AL +  +    GK    A++ D+  L   A++E+ Y   + S +
Sbjct: 18  ILVALSGGVDS-----ALVAYSAYTKLGKSAI-AVTADYKTL---AQEELEYAKKISSEI 68

Query: 81  RIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            I H V+ +     ++            R      + + AK     +I+     DD    
Sbjct: 69  GIKHIVIEYNELDNESFVKNDNNRCFYCRSELSEHLLQVAKEFETDMIVDGTNIDDL--- 125

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDP 192
                                 +    N  I  P    +  ++ +R       +S  + P
Sbjct: 126 ---------------GDYRPGVLALRENG-IRSPLAETKFSKKMVREVAKNVGLSVYDKP 169

Query: 193 SN 194
           SN
Sbjct: 170 SN 171


>gi|92116313|ref|YP_576042.1| tRNA-specific 2-thiouridylase MnmA [Nitrobacter hamburgensis X14]
 gi|122418585|sp|Q1QQB5|MNMA_NITHX RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91799207|gb|ABE61582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrobacter hamburgensis X14]
          Length = 400

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 26/136 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L S   D     ++      DH     R+    A
Sbjct: 7   LEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLY----DHGAATHRKGACCA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++    +V  RL I H V+ ++N   +T +   A                R  ++  +
Sbjct: 63  GQDIHDARNVAERLGIPHYVLDYENRFRETVIENFADSYASGETPVPCIECNRLVKFRDL 122

Query: 111 SEHAKTINATLIMTAH 126
              A+ + A  + T H
Sbjct: 123 LATARELGAAALATGH 138


>gi|328953818|ref|YP_004371152.1| GMP synthase (glutamine-hydrolyzing) [Desulfobacca acetoxidans DSM
           11109]
 gi|328454142|gb|AEB09971.1| GMP synthase (glutamine-hydrolyzing) [Desulfobacca acetoxidans DSM
           11109]
          Length = 515

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 24/197 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             S +E+    +R  +    ++ A+SGG DS    + LH  + DR       + I V++ 
Sbjct: 201 MRSFVEATTQALRQKIGTERVICALSGGVDSSVTAVLLHRAIGDR------LTCIFVNNG 254

Query: 62  -LRETAKDEVRYVSDVCS---RLRIAHSVVSWKNSKPQTGL---MAAAREARYALISEHA 114
            LR+    E   V  +     RL + +   S    K   G+       R      I   A
Sbjct: 255 VLRQG---EAEKVVRLFRENYRLNLVYVDASKSFLKLLEGIVDPEEKRRRIGREFIRVFA 311

Query: 115 KTIN----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +          +     + D +E+V  +      +    + G+ + +     L +  P  
Sbjct: 312 EEAGKLGQVKYLAQGTLYPDVIESVSFKGPSATIKTHHNVGGLPEVMP----LELIEPLR 367

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  + 
Sbjct: 368 ELFKDEVREVGSELGLP 384


>gi|328948557|ref|YP_004365894.1| AraC family transcriptional regulator [Treponema succinifaciens DSM
           2489]
 gi|328448881|gb|AEB14597.1| transcriptional regulator, AraC family [Treponema succinifaciens
           DSM 2489]
          Length = 382

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 42/194 (21%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E+++ ++RSL     ++VA S G DS  LL   H VL +         A++      
Sbjct: 120 EKLENLKNYLRSL---GSVIVAFSSGVDSTFLLKVAHDVLGE------NAVAVT------ 164

Query: 64  ETA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEH 113
             +    K E     + C +  I H  V  +        +         ++  +  I   
Sbjct: 165 AKSCSFPKREADEAEEFCKKEGIRHISVDSEELDIPEFRRNPKNRCYLCKKEIFTKIIAL 224

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK    T +      DD                G    G+       +   +   +    
Sbjct: 225 AKENKITFVCEGSNMDDN---------------GDYRPGLQAVAELGVKSPLR--YCNLY 267

Query: 174 REDIRSFLLQRNIS 187
           +E+IR+   + N+ 
Sbjct: 268 KEEIRALSKEMNLP 281


>gi|219126278|ref|XP_002183388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405144|gb|EEC45088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 368

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 44/207 (21%)

Query: 24  VAV--SGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRETAKDEVRYVSDVC 77
           VA+  SGG DS   L  L     D +   +K         + HC     +D+ R   +VC
Sbjct: 1   VALLLSGGVDSSVALNLLVQQGYDVTAFYLKIWLEDELAHLGHC--PW-EDDYRVCQEVC 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTINATL 121
            +  I    VS +N+     +      A + R             +    E         
Sbjct: 58  EQAGIPLETVSLQNAYKSRVIAYTVHEAEQGRTPNPDIMCNSRVKFGCFYEAIDQREFDF 117

Query: 122 IMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           + + H      D  ET  MR  R           +C T+  D    +  P    ++  +R
Sbjct: 118 VASGHYAQLVKD-TETGSMRLLRAPDPIKDQSYFLC-TLTQDQLQRVLFPIGHLQKSQVR 175

Query: 179 SFLLQRNISWCEDPSNTDDRFERVRVR 205
               +  +                R+R
Sbjct: 176 DLADEFILP--------------NRLR 188


>gi|293402102|ref|ZP_06646241.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304494|gb|EFE45744.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 437

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 28/188 (14%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   +        +   + V+H L R+   + V
Sbjct: 135 LIREQVKDKKVLLALSGGVDSSVVAALLIKAIGK------QLVCVHVNHGLMRKGESESV 188

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAA--REAR--------YALISEHAKTINA 119
             V     + ++  +++    S+   G L   A   + R             E  K    
Sbjct: 189 VEV----FKNQLDANLIYADASERFLGKLENVADPEKKRKIIGTEFIRVFEEEARKLEGI 244

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  DL   +  P  +  ++++R+
Sbjct: 245 DYLAQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLGFALVEPLRQLFKDEVRA 298

Query: 180 FLLQRNIS 187
             L+  + 
Sbjct: 299 CGLELGLP 306


>gi|295101943|emb|CBK99488.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Faecalibacterium prausnitzii L2-6]
          Length = 516

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  +    +L A+SGG DS  L   L   +        + + + VDH  L
Sbjct: 200 SFVENNVEALRKRIGSGKVLCALSGGVDSSVLAAMLAKAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYVSDV----CSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALI 110
           R+  K+EV   S       +   I    V  ++       G+    R+ +        + 
Sbjct: 254 RKNEKEEV--CSVFGPGNANGFDINFICVDARDRYFAKLAGVTEPERKRKIIGEEFIRVF 311

Query: 111 SEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            E AK I     +     + D +E+     +    +    + G+ DT+ +     +  P 
Sbjct: 312 EEQAKQIGKVDFLAQGTIYPDVVESGL-GGESTVIKSHHNVGGLPDTVDFK---ELVEPL 367

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 368 RNLFKDEVRQAGRELGLP 385


>gi|326803425|ref|YP_004321243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651703|gb|AEA01886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 374

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 41/205 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               +++ +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   KNKKVVLGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA----------------LISEHA 114
           R V  V S++ I +  V+++             E R+                    ++A
Sbjct: 57  RDVQAVASQIGIPYYSVNFEKEYWDRVFEYFLDEYRHDRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             + A  +   H      +DQ E   +R      ++   L+ +    L         P  
Sbjct: 117 LDLGADYVAMGHYARVRTNDQGEVELLRGVDSNKDQTYFLNQLSQEQLQHA----LFPIG 172

Query: 171 RCRREDIRSFLLQRNIS--WCEDPS 193
              + ++R      N+     +D +
Sbjct: 173 ELEKSEVRKIAEDHNLKTAHKKDST 197


>gi|319899244|ref|YP_004159337.1| GMP synthase [Bartonella clarridgeiae 73]
 gi|319403208|emb|CBI76767.1| GMP synthase [Bartonella clarridgeiae 73]
          Length = 518

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 22/191 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V  + ++  +SGG DS  + + LH  + D      +   + VDH L R+ 
Sbjct: 209 EQAVAAIRKKVGKSRVICGLSGGVDSSVVAVLLHEAIGD------QLICVFVDHGLMRKN 262

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
             +EV  +        I    V+              P+       R        E  K 
Sbjct: 263 EAEEVLKLFR--DHYNIKLVHVNAASIFINALEGEIDPEKKRKIIGRLFIEVFEEETKKI 320

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V            +        +   + + +  P     ++D
Sbjct: 321 GGAEFLAQGTLYPDVIESV----SAIGEAVTIKSHHNVGGLPERMKMELIEPLRELFKDD 376

Query: 177 IRSFLLQRNIS 187
           +RS   +  + 
Sbjct: 377 VRSLGRELGLP 387


>gi|317509523|ref|ZP_07967128.1| cell cycle protein MesJ [Segniliparus rugosus ATCC BAA-974]
 gi|316252180|gb|EFV11645.1| cell cycle protein MesJ [Segniliparus rugosus ATCC BAA-974]
          Length = 193

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT 195
            +   R    +      +     +D      RP L  RR   R+   +  I   EDP NT
Sbjct: 6   LLGLGRGSGPRS-----IQGMRAWDD--PWGRPLLGVRRATTRAVCAELGIEPHEDPMNT 58

Query: 196 DDRFERVRVRRFVRDIDLHAL 216
           D RF R R+R  V  +    L
Sbjct: 59  DPRFARARLRAEVLPLLEDVL 79


>gi|238650755|ref|YP_002916609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia peacockii str. Rustic]
 gi|259495838|sp|C4K1W0|MNMA_RICPU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|238624853|gb|ACR47559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia peacockii str. Rustic]
          Length = 365

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------RETAKDEVRYV 73
           + I+VA+SGG DS  +   LH    +     ++      DH +         A  ++   
Sbjct: 9   STIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DHGMAVGKKNSCCAGQDIYDA 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAKTI 117
             V ++L I H V+ +++   ++ +                    +  ++  + + A+ +
Sbjct: 65  KMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTAREL 124

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L       L     ++  P    
Sbjct: 125 GADKLATGHYVRKINGDNGAE--LHTGLDPAKDQSYFLFMTTKEQLE----YLRFPLGGL 178

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            + + R    +  +   + P + D  F
Sbjct: 179 TKGETRKLASKFGLEVADKPDSQDICF 205


>gi|325474270|gb|EGC77458.1| GMP synthase [Treponema denticola F0402]
          Length = 514

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 45/201 (22%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E+++  V++ V    +L+A+SGG DS  L   L+  +          + I VDH L R+ 
Sbjct: 208 EAIKD-VQNTVKDGKVLLALSGGVDSSVLAALLNRAVGK------NLTCIFVDHGLMRKN 260

Query: 66  AKDEVR-----------YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
             DEV             V+     L      VS    K +       R     +  E A
Sbjct: 261 EGDEVEAAFRDAPMNFIRVNAESRFLG-KLKGVSDPEKKRKIIGEEFIR-----VFEEEA 314

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS-------GMCDTILYDLNLWIS 166
           + I     +     + D +E            KG  +        G+ D I +     + 
Sbjct: 315 EKIGTVDFLAQGTIYADIVE---------SGTKGSAVIKSHHNVGGLPDHISFKS---LI 362

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     +++IR+   +  + 
Sbjct: 363 EPLKTLFKDEIRNLGTELGLP 383


>gi|56419544|ref|YP_146862.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
           HTA426]
 gi|81347762|sp|Q5L186|MNMA1_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|56379386|dbj|BAD75294.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Geobacillus kaustophilus HTA426]
          Length = 370

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 30/191 (15%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS      L     D      +++       +        TA ++  
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDDTNDDGVC-------TATEDYE 54

Query: 72  YVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAK 115
            V  V ++L I +  V+++     +  T  +   +  R             +    ++A 
Sbjct: 55  DVKRVANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYAL 114

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           +++A  I T H      E   +   R           +   +  +    +  P     ++
Sbjct: 115 SLDADYIATGHYARINRENGQIALLRGKDPNKDQTYFLSQ-LTAEHLSKVLFPIGELTKD 173

Query: 176 DIRSFLLQRNI 186
           ++R    + N+
Sbjct: 174 EVRKIAQELNL 184


>gi|291534231|emb|CBL07344.1| conserved hypothetical protein TIGR00268 [Megamonas hypermegale
           ART12/1]
          Length = 270

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 82/270 (30%), Gaps = 53/270 (19%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE- 64
           +   +  +  L     + VA SGG DS  L  A    L D++   I  +A+       E 
Sbjct: 1   MNKQQQLIELLKSYQSVAVAFSGGVDSSVLAKATQIALGDKA---IAITAV------SEL 51

Query: 65  ---TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM-AAAREA-----RYALISEHAK 115
                  + + V+ +   + I H + +  +   +        R       R+ L+ +  +
Sbjct: 52  ITTNEISDAKKVAKL---IGIKHELFTVDDLADKKFTCNDKMRCYHCHINRFKLLEDFCQ 108

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCR 173
             N   ++     DD               KG    GM     + L      PF  L   
Sbjct: 109 KNNYNYLLEGSNEDD---------------KGDYRPGMLALKEFKLTK---SPFLELHIT 150

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           +++IR      N+     PS+             +    ++ L +  ++   +    N  
Sbjct: 151 KDEIRQMAKDWNLPVWNKPSSA-----------CLASRLIYGLDVTPERLNQVAKAENIL 199

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
              L  +    H   +  I  +   +    
Sbjct: 200 HKFLQGQIRVRHHGDLARIEVETNEVPKLF 229


>gi|240849849|ref|YP_002971237.1| GMP synthase [Bartonella grahamii as4aup]
 gi|240266972|gb|ACS50560.1| GMP synthase [Bartonella grahamii as4aup]
          Length = 518

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 22/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S  E     +R  V  + ++  +SGG DS  + + LH  + D      + + I VDH L 
Sbjct: 206 SYREQAIATIRQKVGKSRVICGLSGGVDSSVVAVLLHEAIGD------QLTCILVDHGLM 259

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R+   +EV  +        I    V+  +         + P+       R        E 
Sbjct: 260 RKNEAEEVLTLFR--DHYNIELIHVNAADIFLNALEGETDPEKKRKTIGRLFIEVFEEET 317

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K   A  +     + D +E+V            +        +   +N+ +  P     
Sbjct: 318 KKIGGAEFLAQGTLYPDVIESV----SAIGKTVTIKSHHNVGGLPEQMNMQLVEPLRELF 373

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 374 KDEVRLLGRELGLP 387


>gi|257438245|ref|ZP_05614000.1| GMP synthase [Faecalibacterium prausnitzii A2-165]
 gi|257199322|gb|EEU97606.1| GMP synthase [Faecalibacterium prausnitzii A2-165]
          Length = 516

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  +    +L A+SGG DS  L   L   +        + + + VDH  L
Sbjct: 200 SFVENNVKALRERIGDGKVLCALSGGVDSSVLAAMLAKAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYVSDV----CSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALI 110
           R+  K+EV   S       +   I    V  ++       G+    R+ +        + 
Sbjct: 254 RKNEKEEV--CSVFGPGNANGFDINFICVDARDRYFSKLAGVTEPERKRKIIGEEFIRVF 311

Query: 111 SEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            E AK I     +     + D +E+     +    +    + G+ DT+ +     +  P 
Sbjct: 312 EEQAKLIGKVDFLAQGTIYPDVVESGL-GGESTVIKSHHNVGGLPDTVDFK---ELVEPL 367

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 368 RNLFKDEVRQVGRELGLP 385


>gi|86359043|ref|YP_470935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli CFN 42]
 gi|123510891|sp|Q2K4M8|MNMA_RHIEC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86283145|gb|ABC92208.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferaseprotein
           [Rhizobium etli CFN 42]
          Length = 408

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 54/208 (25%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA------K 67
                ++VA+SGG DS  +   L     D     ++      DH     R  +       
Sbjct: 19  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 74

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALIS 111
           D+ R+V   C  L I H V+ ++    +T +   A                   ++A + 
Sbjct: 75  DDARHV---CETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLL 131

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-------- 163
             AK + A  + T H         Y+RS+ + + +  G   +      D +         
Sbjct: 132 ATAKELGADALATGH---------YIRSRPNPSSEHPGRRALFRPADADRDQSYFLFATT 182

Query: 164 -----WISRPFLRCRREDIRSFLLQRNI 186
                ++  P     + + R    +  +
Sbjct: 183 QEQIDYLRFPLGGLPKAETRRLAEEMGL 210


>gi|315453947|ref|YP_004074217.1| GMP synthase [Helicobacter felis ATCC 49179]
 gi|315132999|emb|CBY83627.1| GMP synthase (glutamine-hydrolyzing) [Helicobacter felis ATCC
           49179]
          Length = 514

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L AVSGG DS  +       L +      +   + VDH  LR   +D   
Sbjct: 209 IKDQVGSDRVLCAVSGGVDSSVVAALCARALKE------QVEVVFVDHGLLRAGERD--- 259

Query: 72  YVSDVCSRLRIAHSVVSWKN------------SKPQTGLMAAAREARYALISEHAKTINA 119
            V+ + + L+I   V+  ++             + +  +  A  E       E +K  + 
Sbjct: 260 QVARMFADLQIPLHVLDAQDLFLSRLKGVVEPEQKRQIIGHAFIEVFEQKAQELSKQGSI 319

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V            +        +   +NL +  P     ++++R+
Sbjct: 320 KWLAQGTLYPDVIESV----SAKGPSAVIKSHHNVGGLPEKMNLKLLEPLRELFKDEVRA 375

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 376 LGARLGLP 383


>gi|222099726|ref|YP_002534294.1| GMP synthase [Thermotoga neapolitana DSM 4359]
 gi|221572116|gb|ACM22928.1| GMP synthase [Thermotoga neapolitana DSM 4359]
          Length = 503

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E +R    ++     IL A+SGG DS    + +H  +            + VDH  LR+ 
Sbjct: 196 EKIRHIKETIGNKKAIL-ALSGGVDSSVAAVLVHRAIGK------NLVCVFVDHGLLRKN 248

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
            ++EV  V        +   VV  +          + P+        E    +  E AK 
Sbjct: 249 EREEVERVFK--EHFDMNLVVVDARKRFLEKLRGVTDPEKKRKIIGEEF-IRVFEEEAKK 305

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   ++    + D +E+    +        +        +   +NL +  P     +++
Sbjct: 306 HDVEFLVQGTIYSDVIES----AASGKTTAKIKSHHNVGGLPEKMNLKLVEPLRDLFKDE 361

Query: 177 IRSFLLQRNIS 187
           +R       I 
Sbjct: 362 VRKVGKYLGIP 372


>gi|327192984|gb|EGE59899.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Rhizobium etli CNPAF512]
          Length = 399

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+ + + +  G   +      D +            
Sbjct: 126 KELGADALATGH---------YIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R    +  +
Sbjct: 177 IDYLRFPLGGLPKAETRRLAEEMGL 201


>gi|227823283|ref|YP_002827255.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium fredii NGR234]
 gi|254811457|sp|C3MI00|MNMA_RHISN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|227342284|gb|ACP26502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium fredii NGR234]
          Length = 398

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETLGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+     +  G   +      + +            
Sbjct: 126 KELGADALATGH---------YIRSRPSPKPRYQGQRALYRPTDAERDQSYFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R+   +  +
Sbjct: 177 IDYLRFPLGNLSKPETRALAEEMGL 201


>gi|190893264|ref|YP_001979806.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Rhizobium etli CIAT 652]
 gi|229486418|sp|B3PYW4|MNMA_RHIE6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|190698543|gb|ACE92628.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Rhizobium etli CIAT 652]
          Length = 408

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 19  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 74

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 75  DDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 134

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+ + + +  G   +      D +            
Sbjct: 135 KELGADALATGH---------YIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQ 185

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R    +  +
Sbjct: 186 IDYLRFPLGGLPKAETRRLAEEMGL 210


>gi|225405534|ref|ZP_03760723.1| hypothetical protein CLOSTASPAR_04754 [Clostridium asparagiforme
           DSM 15981]
 gi|225042946|gb|EEG53192.1| hypothetical protein CLOSTASPAR_04754 [Clostridium asparagiforme
           DSM 15981]
          Length = 437

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 20/195 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     VR  V    +L+A+SGG DS  +   L   + +      +   + V+H 
Sbjct: 125 MKNFIEDQVELVRRQVGDRKVLLALSGGVDSSVVAALLLKAIGN------QLVCVHVNHG 178

Query: 62  L-RETAKDEVRYVS--DVCSRLRIAHSVVSWKNSKPQTGLMAAAR-----EARYALISEH 113
           L R+   + V  V    + + L    +V  +             R     E       E 
Sbjct: 179 LMRKNESESVVEVFKNQLHANLIYVDAVERFLGKLENVSDPEQKRKIIGGEFIRVFEEEA 238

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K      +     + D +E            K +        +  DL   +  P  +  
Sbjct: 239 RKLDGIDFLGQGTIYPDIIE------SGTKTAKMVKSHHNVGGLPEDLKFELVEPLKQLF 292

Query: 174 REDIRSFLLQRNISW 188
           ++++R+  ++  +  
Sbjct: 293 KDEVRACGVELGLPH 307


>gi|257063219|ref|YP_003142891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia heliotrinireducens DSM 20476]
 gi|256790872|gb|ACV21542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia heliotrinireducens DSM 20476]
          Length = 353

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 48/198 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----------RETAKDE 69
            +LV +SGG DS      L            +    +++  L           R+   ++
Sbjct: 4   RVLVGMSGGVDSSVTAYLLLR-------QGYEVVGATMN--LYDPGRLGVPDVRDGESND 54

Query: 70  VRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAA------------REARYALISEH 113
           +     V +RL IAH V+     ++N+  +    A A            R  ++ L+ + 
Sbjct: 55  LEDARSVANRLGIAHHVLDFGCEFENNVVRPFAQAYADGLTPNPCIACNRHLKFGLMLKA 114

Query: 114 AKTINATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           A+ +    I T H        D +   V M+   D  ++   L  M      D       
Sbjct: 115 ARELGCDGIATGHYARIAQRLDGRF--VLMKGLDDAKDQAYVLYHMTQ----DQLAHTVL 168

Query: 168 PFLRCRREDIRSFLLQRN 185
           P     ++ +R+   ++ 
Sbjct: 169 PLGEYTKQQVRAIAAEQG 186


>gi|115451057|ref|NP_001049129.1| Os03g0174600 [Oryza sativa Japonica Group]
 gi|108706458|gb|ABF94253.1| tRNA methyl transferase family protein, expressed [Oryza sativa
           Japonica Group]
 gi|113547600|dbj|BAF11043.1| Os03g0174600 [Oryza sativa Japonica Group]
 gi|215737060|dbj|BAG95989.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 488

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 73/225 (32%), Gaps = 50/225 (22%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +     +   P  + V VSGG DS   L  LH+     +   +K          +E  
Sbjct: 65  ERLLRCAAAGRAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIW-------FQEDF 117

Query: 67  ---------KDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------- 106
                     D+++Y   VC ++ +   VV   +       + ++   R  R        
Sbjct: 118 RNFWSECPWDDDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLC 177

Query: 107 -----YALISEHAKTINATLIMTAHTFD------DQLE--TVYMRSQRDYAEKGMGLSGM 153
                +    E  + +    I + H         D +E  +V   S+    ++   LS +
Sbjct: 178 NTRIKFGAFLEAIENLGFDYIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHL 237

Query: 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             T L      +  P     ++++R    Q ++       N D +
Sbjct: 238 SQTQLRR----LLFPLGCITKDEVRRLAAQMDLP------NQDRK 272


>gi|91978423|ref|YP_571082.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           BisB5]
 gi|91684879|gb|ABE41181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris BisB5]
          Length = 402

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 36/205 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L S   D     ++      DH     R+    A
Sbjct: 11  LEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLY----DHGAATHRKGACCA 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 67  GQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRDL 126

Query: 111 SEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
              A+ + A+ + T H       DD    +   + RD  +     +   + + +     +
Sbjct: 127 LATARELGASALATGHYVSSRRLDDGSRALICAADRDRDQSYFLFATTREQLDF-----L 181

Query: 166 SRPFLRCRREDIRSFLLQRNISWCE 190
             P     +   R    Q  +S  +
Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVAD 206


>gi|319787135|ref|YP_004146610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465647|gb|ADV27379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 373

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 50/190 (26%), Gaps = 37/190 (19%)

Query: 23  LVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +V VSGG DS      L           + +    G  +  A        E  + +   V
Sbjct: 8   VVGVSGGVDSSVAAWLLAQSGEPLAGLFMQNWDDDGSGECRA--------EEDRRDAVAV 59

Query: 74  SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTI 117
              C RL I           W           AA           RE ++    + A+ +
Sbjct: 60  ---CGRLGIPFHFRDFSKEYWAGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAREL 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I T H      E    R  R           +       L   +  P     + ++
Sbjct: 117 GAERIATGHYAQVLHEGGRWRLLRGADRDKDQTYFLHQLGQAQLAATLF-PIGHLPKAEV 175

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 176 RRLAREAGLP 185


>gi|266620688|ref|ZP_06113623.1| GMP synthase protein [Clostridium hathewayi DSM 13479]
 gi|288867681|gb|EFC99979.1| GMP synthase protein [Clostridium hathewayi DSM 13479]
          Length = 435

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 28/188 (14%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +RS V    +L+A+SGG DS  +   L   +        + + + V+H L R+    E 
Sbjct: 133 LIRSQVGDKKVLLALSGGVDSSVVAALLIKAIGK------QLTCVHVNHGLMRKG---ES 183

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
             V DV  + ++  ++V    ++   G +A              E       E  K    
Sbjct: 184 ESVIDV-FKHQLDANLVYVDATERFLGKLAGVADPEQKRKIIGAEFIRVFEEEARKLEGI 242

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            K +        +  DL   +  P  +  ++++R+
Sbjct: 243 EFLAQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFQLVEPLRQLFKDEVRA 296

Query: 180 FLLQRNIS 187
             ++  + 
Sbjct: 297 CGVELGLP 304


>gi|170739288|ref|YP_001767943.1| GMP synthase [Methylobacterium sp. 4-46]
 gi|168193562|gb|ACA15509.1| GMP synthase, large subunit [Methylobacterium sp. 4-46]
          Length = 518

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L  +SGG DS    + +H  + +      + + + VDH  LR    +EV 
Sbjct: 214 IRRQVGGEKVLCGLSGGVDSAVAAVLIHEAIGE------QLTCVFVDHGLLRLGEAEEV- 266

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V  ++         + P+       R       +E  K+  A  +
Sbjct: 267 -VRLFRDHYNIPLVHVQAQDLFLGALAGVTDPEVKRKTIGRLFIDVFEAEARKSGGAAFL 325

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 326 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRVLGR 382

Query: 183 QRNIS 187
           +  + 
Sbjct: 383 ELGLP 387


>gi|239833572|ref|ZP_04681900.1| GMP synthase, C-terminal domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821635|gb|EEQ93204.1| GMP synthase, C-terminal domain-containing protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 523

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++ A+SGG DS    +  H  + D      + + I VDH L R+ 
Sbjct: 213 EQAVEAIRKQVGSGKVICALSGGVDSSVAALLAHEAIGD------QLTCILVDHGLMRKN 266

Query: 66  AKDEVRYVSDVCSRL-RIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAK 115
              E + V ++      +   +V   +           P+       R        E  K
Sbjct: 267 ---EAQQVVEMFREHYNLPLILVDASDRFIGELEGETDPEKKRKTIGRLFIEVFEEEAKK 323

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E+V   S        +        +   + + +  P     ++
Sbjct: 324 LGGADFLVQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKD 380

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 381 EVRLLGKELGLP 392


>gi|261405437|ref|YP_003241678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. Y412MC10]
 gi|261281900|gb|ACX63871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. Y412MC10]
          Length = 375

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 38/195 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           +   I+V +SGG DS    + L         +         +    +        A+ + 
Sbjct: 12  HNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDDTDELGYCT--------AEADA 63

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGL-----MAAA-----------REARYALISEHA 114
             V  VC +L I +  V+++                A           RE ++      A
Sbjct: 64  EDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 123

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             + A  + T H      E    R  R      ++   L+ +    L         P   
Sbjct: 124 MDLGADYVATGHYARVIEEDGQYRLLRGVDSNKDQTYFLNALSQEQLAKAMF----PIGH 179

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 180 LPKPEVRRLAEEAGL 194


>gi|217978097|ref|YP_002362244.1| tRNA-specific 2-thiouridylase MnmA [Methylocella silvestris BL2]
 gi|217503473|gb|ACK50882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylocella silvestris BL2]
          Length = 415

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 76/211 (36%), Gaps = 45/211 (21%)

Query: 10  RFFVRSLVYPA-----HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHC 61
           R  + SL  P       ++VA+SGG DS  +   +               A+++   DH 
Sbjct: 15  RRELNSLGLPKPPAQTRVVVAMSGGVDSSVVAALMKE-------QGYDVIAVTMQLYDHG 67

Query: 62  ---LRET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAA--------- 102
               R+    A  +++    V +RL I H V+ ++    +  +     + A         
Sbjct: 68  EAIHRKGACCAGQDIQDARLVAARLDIPHYVLDYEERFREKVINPFSHSYATGETPIPCV 127

Query: 103 ---REARYALISEHAKTINATLIMTAH---TFDDQL-ETVYMRSQRDYAEKGMGLSGMCD 155
               E ++A + + A  + A ++ T H   T  D+  E V  R+     ++   L     
Sbjct: 128 SCNSEIKFADLFDTALDLGADVLATGHYVSTRSDEAGERVLHRAFDGARDQSYFLFATTR 187

Query: 156 TILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             L      +  P     + D+R+   +  +
Sbjct: 188 RQLQ----MLRFPLGDMTKTDVRALARRFGL 214


>gi|327467648|gb|EGF13145.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK330]
          Length = 373

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 63/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++    +       A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H      DQ     +   R      ++   LS +    L         P
Sbjct: 117 LTLGADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKPEVRAIAERAGLA 189


>gi|325689331|gb|EGD31337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK115]
          Length = 373

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 63/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++    +       A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H      DQ     +   R      ++   LS +    L         P
Sbjct: 117 LTLGADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKPEVRAIAERAGLA 189


>gi|298292472|ref|YP_003694411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Starkeya novella DSM 506]
 gi|296928983|gb|ADH89792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Starkeya novella DSM 506]
          Length = 395

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 67/213 (31%), Gaps = 35/213 (16%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC----LRET---AKDE 69
                ++VA+SGG DS  +         D     ++      DH      R     A  +
Sbjct: 11  PSHTRVVVAMSGGVDSSVVAALYAKAGYDVVGVTLQLY----DHGEAMHHRPGACCAGQD 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEH 113
           +     V  +L I H V+ +++      +   A                R  ++  + E 
Sbjct: 67  IYDARTVAEKLGIPHYVLDYESRFRHAVIERFADAYAAGETPIPCVDCNRTVKFRDLLET 126

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPF 169
           A+ + A ++ T H    +     +   R    + +  S      LY         +  P 
Sbjct: 127 ARDLGADILATGHYVTSRA----LEGGRRALFRPLDESRDQSYFLYATTQEQIDMLRFPL 182

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
               + ++R+   +  +   + P + D  F   
Sbjct: 183 GETTKPEVRALAEEFGLKVADKPDSQDICFVPN 215


>gi|197119634|ref|YP_002140061.1| tRNA-specific 2-thiouridylase MnmA [Geobacter bemidjiensis Bem]
 gi|197088994|gb|ACH40265.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter bemidjiensis Bem]
          Length = 355

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 39/195 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR----ETAKDEVRYV 73
               + VA+SGG DS  +   L    ++     +K  A       R      AK + + V
Sbjct: 6   KGKKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFA-------RDGEDPQAKGDAQIV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAA-------------REARY---ALISEHAKTI 117
           ++    L I   +V  +    +  +                 R  RY    L+ + A  +
Sbjct: 59  AEY---LGIEFHLVHLEEQFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDKALEL 115

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC- 172
            A  + T H    + DD      +++     ++   L  +    L      +  P     
Sbjct: 116 GAEYLATGHYVRTSRDDGGSYHLLKAAFLAKDQSYFLYTLTQKQLS----HVVFPLGDMP 171

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 172 SKDEVRRLAEKFGLP 186


>gi|319779430|ref|YP_004130343.1| GMP synthase [Taylorella equigenitalis MCE9]
 gi|317109454|gb|ADU92200.1| GMP synthase [Taylorella equigenitalis MCE9]
          Length = 532

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 21/192 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I+    +++  V    +++ +SGG DS      +H  + D+       + + VDH  LRE
Sbjct: 214 IDEAVAYIKKTVGEDEVILGLSGGVDSSVAAALIHRAIGDK------LTCVFVDHGLLRE 267

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
              D+V     +   L +    V   N         S P+       RE      +E AK
Sbjct: 268 HEGDQVM--QALNENLGVKIIRVDATNQFLGKLEGVSDPEQKRKIIGREFVEVFQAEAAK 325

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             NA  +     + D +E+      +      +        +   LNL +  P     ++
Sbjct: 326 LPNAKWLAQGTIYPDVIES---AGSKTGKAVTIKSHHNVGGLPETLNLKLLEPLRELFKD 382

Query: 176 DIRSFLLQRNIS 187
           ++R   L   I 
Sbjct: 383 EVRKLGLALGIP 394


>gi|315303264|ref|ZP_07873908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria ivanovii FSL F6-596]
 gi|313628376|gb|EFR96865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria ivanovii FSL F6-596]
          Length = 371

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYEDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLNEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +    L      +  P    
Sbjct: 121 GADFVATGHYAQVKQVGDEIE--LLRGVDNNKDQTYFLNQLSQEQLQK----VMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKSEVREIATKAGLA 189


>gi|311029179|ref|ZP_07707269.1| GMP synthase [Bacillus sp. m3-13]
          Length = 512

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E     +R +V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFLEIEMQKIRDVVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   KDE   V         +    V  K+         S P+        E  Y    E
Sbjct: 256 R---KDEADAVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 ASKLEGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFQLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 367 FKDEVRALGTELGIP 381


>gi|218531106|ref|YP_002421922.1| GMP synthase [Methylobacterium chloromethanicum CM4]
 gi|218523409|gb|ACK83994.1| GMP synthase, large subunit [Methylobacterium chloromethanicum CM4]
          Length = 521

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R    DEV 
Sbjct: 217 IREQVGKEKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLMRLGEGDEV- 269

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V  ++           P+       R       +E  K   A  +
Sbjct: 270 -VRLFRDHYNIPLIHVQAQDLFIGALEGVDDPEVKRKTIGRLFIDVFEAEAGKIGGAAFL 328

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 329 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRLLGK 385

Query: 183 QRNIS 187
           +  + 
Sbjct: 386 ELGLP 390


>gi|119962972|ref|YP_948566.1| GMP synthase [Arthrobacter aurescens TC1]
 gi|119949831|gb|ABM08742.1| GMP synthase (Glutamine amidotransferase) [Arthrobacter aurescens
           TC1]
          Length = 529

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 27/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +  + ++  +SGG DS     A+ + L  R+ G  + + + VDH  LRE   ++V 
Sbjct: 218 IRQQIGDSKVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLREGEAEQVE 271

Query: 72  --YVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREA--------RYALISEHAKT 116
             +V+     L +A+    ++      S P+T      RE         R  +    A+ 
Sbjct: 272 RDFVAATGVNLYVANEQERFQSALAGVSDPETKRKIIGREFIRAFEEAERAIIAQAAAEG 331

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E+             +        +  DL   +  P     +++
Sbjct: 332 EKIKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLQFELVEPLRALFKDE 386

Query: 177 IRSFLLQRNIS 187
           +R+   Q  + 
Sbjct: 387 VRAVGAQLGLP 397


>gi|322420793|ref|YP_004200016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
 gi|320127180|gb|ADW14740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
          Length = 357

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 43/197 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RE----TAKDEVR 71
               I VA+SGG DS  +   L    ++          I ++  L  RE     AK + R
Sbjct: 6   KGKKIAVAMSGGVDSSTVAALLKEQGAE---------VIGINMKLFRREGEDPQAKGDAR 56

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-------------REARY---ALISEHAK 115
            V++    L I    V  +    +  +                 R  RY    L+ + A 
Sbjct: 57  IVAEY---LGIEFHQVHLEEEFARLIMEDFRSQYLGGETPNPCVRCNRYVKFGLLLDKAL 113

Query: 116 TINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            + A  + T H    + DD      +++     ++   L  +    L      +  P   
Sbjct: 114 ELGADYLATGHYVRTSRDDSGTYHLLKAAHLAKDQSYFLYTLTQPQLAR----VLFPLGD 169

Query: 172 C-RREDIRSFLLQRNIS 187
              ++++R       I 
Sbjct: 170 MPSKDEVRKRAAAFGIP 186


>gi|291518754|emb|CBK73975.1| conserved hypothetical protein TIGR00268 [Butyrivibrio fibrisolvens
           16/4]
          Length = 269

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 56/199 (28%), Gaps = 45/199 (22%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L   E  +  +  +     + VA S G DS  LL A    L D     I  +AI    
Sbjct: 1   MNLK--EKYQNLIEYIKKLDRVAVAFSSGVDSTFLLYAARQALGD---DAIAITAI---- 51

Query: 61  CLRETAK----DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALI 110
                +      E    S  C+   I   V           S   +      ++  Y+ +
Sbjct: 52  -----SDLIPKREQDEASQFCNERGIKQIVYKANPFEEDGFSGNPSNRCYICKKYLYSHM 106

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF- 169
              A   +   ++     DD               +G    GM           I  P  
Sbjct: 107 KALALGYDIQHVLEGSNLDD---------------EGDYRPGMQAIAELG----ILSPLR 147

Query: 170 -LRCRREDIRSFLLQRNIS 187
            +   +++IR    Q  + 
Sbjct: 148 VIGFTKQEIRDLSAQFGLP 166


>gi|148270235|ref|YP_001244695.1| GMP synthase [Thermotoga petrophila RKU-1]
 gi|226739760|sp|A5ILP6|GUAA_THEP1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|147735779|gb|ABQ47119.1| GMP synthase (glutamine-hydrolyzing) [Thermotoga petrophila RKU-1]
          Length = 501

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E +R    ++     IL A+SGG DS    + +H  +            + VDH  LR+ 
Sbjct: 194 EKIRHIKETIGNKKAIL-ALSGGVDSSVAAVLVHRAIGK------NLVCVFVDHGLLRKN 246

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
            ++EV  V        +   VV  +          + P+        E    +  E AK 
Sbjct: 247 EREEVERVFK--EHFDMNLVVVDARKRFLEKLRGVTDPEKKRKIIGEEF-IRVFEEEAKK 303

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   ++    + D +E+    +        +        +   +NL +  P     +++
Sbjct: 304 HDVEFLVQGTIYSDVIES----AASGKTTAKIKSHHNVGGLPEKMNLKLVEPLRDLFKDE 359

Query: 177 IRSFLLQRNIS 187
           +R       I 
Sbjct: 360 VRKVGKYLGIP 370


>gi|325290475|ref|YP_004266656.1| Conserved hypothetical protein CHP00268 [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965876|gb|ADY56655.1| Conserved hypothetical protein CHP00268 [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 272

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 30/195 (15%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  +E ++  + +L     + +A SGG DS  LL   H VL +      K  A++     
Sbjct: 4   LEKLERLKAILINLDG---LAIAFSGGVDSSFLLKVAHEVLGE------KVIAVTA---- 50

Query: 63  RETA--KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R  +  + E+        +  I H +V       +  +   A   R        K    +
Sbjct: 51  RSCSFPERELNEAVGFARKYGIKHLIV----DSEELDIEGFAENPRNRC--YMCKKELFS 104

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
            I+T    D   E   M          +G       +     L +  P       +E+IR
Sbjct: 105 KIITI--AD---EYQLMNIAEGSNLDDLG--DYRPGMQAIEELGVLSPLREASLTKEEIR 157

Query: 179 SFLLQRNISWCEDPS 193
              L+  +   + PS
Sbjct: 158 ELSLRLGLKTWDKPS 172


>gi|325695737|gb|EGD37636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK150]
          Length = 373

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 66/198 (33%), Gaps = 41/198 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            T+ A  + T H      DQ E V   +R + +  ++   LS +    L         P 
Sbjct: 117 LTLGADYVATGHYAQVKRDQ-EGVVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----PL 171

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R+   +  ++
Sbjct: 172 GHLEKPEVRAIAERAGLA 189


>gi|258546108|ref|ZP_05706342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518660|gb|EEV87519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cardiobacterium hominis ATCC 15826]
          Length = 369

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 44/199 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-------TAKDE 69
              A I V +SGG DS    + L     D     +K           E       +A+++
Sbjct: 7   PQGAKIAVGISGGVDSSVAALLLRDAGYDVFGIFMK--------NWEETYSSGYCSAEED 58

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT-----GLMAAA-----------REARYALISEH 113
           V    DVC  L I    V++     +           A           RE ++A ++ +
Sbjct: 59  VEDARDVCETLGIPLHTVNFVAEYHERVFRHFLAEYGAGRTPNPDILCNREIKFAEMAHY 118

Query: 114 AKTINATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           A  + A  + T H                 +      ++   LS +    L         
Sbjct: 119 AAELGADYLATGHYARRGTHHGAPA---LYKGVDGSKDQSYFLSQITPAQLDKA----LF 171

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + D+R    Q  +
Sbjct: 172 PLGGMAKSDVRRIAEQAGL 190


>gi|313124829|ref|YP_004035093.1| hypothetical protein Hbor_00410 [Halogeometricum borinquense DSM
           11551]
 gi|312291194|gb|ADQ65654.1| conserved hypothetical protein TIGR00268 [Halogeometricum
           borinquense DSM 11551]
          Length = 302

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 55/191 (28%), Gaps = 42/191 (21%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----DEV 70
           SL     +L+A SGG DS  +    H  L D         A +        ++    +E+
Sbjct: 24  SLEERDGVLIAFSGGVDSSVVAALAHDALGD------DAIACT------AKSETLPTEEL 71

Query: 71  RYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                V   + I H +V +                   R  R   + + A+      +  
Sbjct: 72  DDARRVADEIGIRHEIVEFSELDNPDFVANDGDRCYHCRTMRLGRMYDAARERGIETVCD 131

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLL 182
                D  E                  G    +     L +  P L     +E++R+   
Sbjct: 132 GTNASDPGE------------------GHRPGLRAVEELEVLSPLLTHDISKEEVRAIAD 173

Query: 183 QRNISWCEDPS 193
              +S  + PS
Sbjct: 174 SYGLSVADKPS 184


>gi|34580653|ref|ZP_00142133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia sibirica 246]
 gi|28262038|gb|EAA25542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia sibirica 246]
          Length = 365

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           + I+VA+SGG DS  +   LH    +     ++      DH +         A  ++   
Sbjct: 9   STIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIYDA 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAKTI 117
             V ++L I H V+ +++   ++ +                    +  ++  + + A+ +
Sbjct: 65  KMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTAREL 124

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L     T   +   ++  P    
Sbjct: 125 GADKLATGHYVRKINGDNGAE--LHTGLDPAKDQSYFLF----TTTKEQLEYLRFPLGGF 178

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            +++ R    +  +   + P + D  F
Sbjct: 179 TKDETRKLASKFGLEVADKPDSQDICF 205


>gi|294775258|ref|ZP_06740781.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
 gi|294450835|gb|EFG19312.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
          Length = 435

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   + +          + V+H L R+   + V
Sbjct: 133 LIRRQVGDKKVLLALSGGVDSSVVAALLLKAIGN------NLVCVHVNHGLMRKGESEAV 186

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V   +           P+        E       E  K      
Sbjct: 187 IEVFK--NQLNANLIYVDATDRFLSKLENVTDPEQKRKIIGGEFIRVFEEEARKLNGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRACG 298

Query: 182 LQRNISW 188
           ++  + +
Sbjct: 299 VELGLPY 305


>gi|319403803|emb|CBI77387.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 409

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 36/210 (17%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFL+ ++     +      + I+VA+SGG DS  +   L     D     ++      DH
Sbjct: 1   MFLNSLD-----LPGHPKNSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLY----DH 51

Query: 61  C---LRET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----- 109
                R     A  ++     V   L + H ++ ++    +  +   A    YA      
Sbjct: 52  GAATHRVGACCAGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAES--YAHGETPI 109

Query: 110 -------------ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
                        +   A  + A  + T H    +    +    R           +  T
Sbjct: 110 PCVSCNQTVKFSDLLTTAYELGADALATGHYIRSRAHGAHRALFRSLDADRDQSYFLFAT 169

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
               ++ ++  P     +E +R    +  +
Sbjct: 170 TQEQID-YLRFPLGDLSKERVREIATEMGL 198


>gi|284163472|ref|YP_003401751.1| tRNA methyl transferase-like protein [Haloterrigena turkmenica DSM
           5511]
 gi|284013127|gb|ADB59078.1| tRNA methyl transferase-like protein [Haloterrigena turkmenica DSM
           5511]
          Length = 313

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 43/204 (21%)

Query: 3   LSPIESVRFFVRS-LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           ++ +E+     R  L     +LVA SGG DS  +    H  L +         A +    
Sbjct: 1   MTTLEAKLEAAREDLAGRDGVLVAFSGGVDSSVVAALAHDALGE------DAVACT---- 50

Query: 62  LRETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALIS 111
               +    + E+     V   + I H +VS+   +    +          R  R   + 
Sbjct: 51  --AKSETLPEAELEDARRVADEIGIRHEIVSFSELESDDFVENDDDRCYHCRTMRLGEML 108

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL- 170
           E A+ +    +      DD                G G       +     L +  P L 
Sbjct: 109 ETAREVGVETVCDGTNADD---------------PGAGHRPGLQAVEE---LEVHSPLLA 150

Query: 171 -RCRREDIRSFLLQRNISWCEDPS 193
               +E++R    +  +S  + PS
Sbjct: 151 HDVTKEEVREIADRYGLSVADKPS 174


>gi|256822321|ref|YP_003146284.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
 gi|256795860|gb|ACV26516.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Kangiella koreensis DSM 16069]
          Length = 367

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 42/198 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDE 69
               H++V +SGG DS      L           +K           E        A ++
Sbjct: 6   PENTHVIVGMSGGVDSSVSAYLLKKQGYQVEGLFMK--------NWEEDDTDEYCSAAED 57

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
           +     VC +L I    V++                 A R          E ++    ++
Sbjct: 58  LADAQAVCDKLGIKLRTVNFAAEYWDRVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLDY 117

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H       D +     +R      ++   L G+    +         P
Sbjct: 118 AQLLGADYIATGHYVRRGEADGKA--TLLRGLDLNKDQSYFLYGVSHEKIAKT----LFP 171

Query: 169 FLRCRREDIRSFLLQRNI 186
                + ++R    ++ +
Sbjct: 172 VGCIEKPEVRKIAEEQGL 189


>gi|313679741|ref|YP_004057480.1| gmp synthase (glutamine-hydrolyzing) [Oceanithermus profundus DSM
           14977]
 gi|313152456|gb|ADR36307.1| GMP synthase (glutamine-hydrolyzing) [Oceanithermus profundus DSM
           14977]
          Length = 504

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 25/193 (12%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR 63
            +++    VR       +L+AVSGG DS  L + L     D        +A+ VDH  LR
Sbjct: 196 ALDAALEEVRGRAGGERVLLAVSGGVDSSTLALLLARAGVDH-------TAVFVDHGLLR 248

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHA 114
              ++EV     + S   +    V  +            P+       RE       + A
Sbjct: 249 LGEREEVE--RALASA-GVNLVTVDARERFLAALEGVGDPEAKRKIIGREFVEVFKEQAA 305

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      +     + D +E+             +        +  +L   +  PF    +
Sbjct: 306 RLGPFRFLAQGTLYPDVIES-----AGGTGAANIKSHHNVGGLPAELGFELLEPFRYLFK 360

Query: 175 EDIRSFLLQRNIS 187
           +++R   L   + 
Sbjct: 361 DEVRELGLLLGLP 373


>gi|126179558|ref|YP_001047523.1| ExsB family protein [Methanoculleus marisnigri JR1]
 gi|125862352|gb|ABN57541.1| ExsB family protein [Methanoculleus marisnigri JR1]
          Length = 257

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 56/182 (30%), Gaps = 36/182 (19%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     + VA+SGG+DS  LL              I+  AISVD  L      E+     
Sbjct: 11  LKSYEPVAVALSGGTDSSVLLALA-------RHHGIQVIAISVDTGLTP--PGELAAARK 61

Query: 76  VCSRLRIAHSVVSWK------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           +  RL + H V+           + +       + A    I   A+      ++     D
Sbjct: 62  LSERLGLPHVVIPLDMLDIPAVRENRPDRCYVCKRAMMEAIVAEARRQGCRTVVDGTHAD 121

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
           D          R  A  GM +            L I  PF      + D+ +   +  + 
Sbjct: 122 D----------RPAARPGMRVLSE---------LGIKSPFAECGMGKADVEALARELGVP 162

Query: 188 WC 189
             
Sbjct: 163 VR 164


>gi|329926781|ref|ZP_08281189.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. HGF5]
 gi|328938981|gb|EGG35349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus sp. HGF5]
          Length = 389

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 38/195 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           +   I+V +SGG DS    + L         +         +    +        A+ + 
Sbjct: 26  HNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDDTDELGYCT--------AEADA 77

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGL-----MAAA-----------REARYALISEHA 114
             V  VC +L I +  V+++                A           RE ++      A
Sbjct: 78  EDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 137

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             + A  + T H      E    R  R      ++   L+ +    L         P   
Sbjct: 138 MDLGADYVATGHYARVIEEDGQYRLLRGVDSNKDQTYFLNALSQEQLSKAMF----PIGH 193

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 194 LPKPEVRRLAEEAGL 208


>gi|330508537|ref|YP_004384965.1| hypothetical protein MCON_2758 [Methanosaeta concilii GP-6]
 gi|328929345|gb|AEB69147.1| conserved hypothetical protein TIGR00268 [Methanosaeta concilii
           GP-6]
          Length = 265

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 87/262 (33%), Gaps = 43/262 (16%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
            ++     +     +L++ SGG DS  L    H VL + +       A+ +D  +   ++
Sbjct: 6   KLKDLKDRIREKERLLISYSGGVDSSLLAKLAHDVLGEGA------VAVILDSEIYPRSE 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATL 121
            E      +   L +   V  +     Q      +      ++   A++   A+    + 
Sbjct: 60  LEEA--VALAESLGLELRVERFSILDDQAFSQNPSTRCYICKKRSSAILKRVAQKEGMSC 117

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIRS 179
           I      DD                   L      I       I  PF+     ++DIR+
Sbjct: 118 IADGVNADD-------------------LDDYRPGIAACSEEGIWHPFVDSGITKKDIRT 158

Query: 180 FLLQRNISWCEDPSNTDDRFERV----RV-RRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
                 +   + PS+      R+    R+ R  +R ++    YLK   F  LRV+     
Sbjct: 159 LAQDMGLPVWDKPSSACLA-SRIPYNERITREGLRMVEEGEEYLKSLGFGQLRVRSQGKT 217

Query: 235 AMLIPKYLTVHMRSIIAISQDI 256
           A +  +     +   +A  Q+I
Sbjct: 218 ARI--ELEEQELERALACRQEI 237


>gi|308070334|ref|YP_003871939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus polymyxa E681]
 gi|305859613|gb|ADM71401.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus polymyxa E681]
          Length = 373

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 59/195 (30%), Gaps = 38/195 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           +   ++V +SGG DS    + L         +         +F         R TA+++ 
Sbjct: 6   HETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFG--------RCTAEEDA 57

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGL-----MAAA-----------REARYALISEHA 114
             V  VC ++ I +  V+++                A           RE ++      A
Sbjct: 58  EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             + A  + T H      E  +    R      ++   L+ +  T L         P   
Sbjct: 118 LDLGADYVATGHYAQVVEEDGHFTLLRGVDSNKDQTYFLNALSQTQLSRAMF----PIGH 173

Query: 172 CRREDIRSFLLQRNI 186
             + ++R       +
Sbjct: 174 LPKPEVRKIAEAAGL 188


>gi|148253403|ref|YP_001237988.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. BTAi1]
 gi|205811320|sp|A5ED38|MNMA_BRASB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146405576|gb|ABQ34082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bradyrhizobium sp. BTAi1]
          Length = 397

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 69/210 (32%), Gaps = 46/210 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L S   D     ++      DH     R+    A
Sbjct: 7   LEGRPEDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLY----DHGAATHRKGACCA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++    +V  RL I H V+ +++   ++ +   A                R  ++  +
Sbjct: 63  GQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGDL 122

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYD 160
            + A+ + A+++ T H            + R  A+    L    D              +
Sbjct: 123 LKTARELGASVLATGHYV----------ASRRLADGSRALVCAADADRDQSYFLFATTRE 172

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCE 190
              ++  P     + ++R    +  +   +
Sbjct: 173 QLDYLRFPLGDMTKPEVRELARRFGLEVAD 202


>gi|118576754|ref|YP_876497.1| ATP-utilizing enzyme of the PP-loop superfamily [Cenarchaeum
           symbiosum A]
 gi|118195275|gb|ABK78193.1| ATP-utilizing enzyme of the PP-loop superfamily [Cenarchaeum
           symbiosum A]
          Length = 264

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 37/184 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCS 78
             ++VA+SGG DS     AL +  + R+ G     A++ D+  L   A+DE+     VCS
Sbjct: 15  GRVMVALSGGVDS-----ALVAYAAHRALGDGAI-AVTADYKTL---AQDELADAKRVCS 65

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKTINATLIMTAHTFDDQL 132
            + + H ++++   +    +   +R   Y        ++  A      +I+     DD  
Sbjct: 66  EIGMQHMLITYDELENADFVRNDSRRCFYCKTELAGRMAGLAAEHGVKVIVDGTNLDDLS 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIRSFLLQRNISWCE 190
           E                       I    +  I  P      R+ED+R       IS  +
Sbjct: 126 E-------------------YRPGIAAMRDGGILSPLADAGFRKEDVRREARLAGISVHD 166

Query: 191 DPSN 194
            PSN
Sbjct: 167 KPSN 170


>gi|320531457|ref|ZP_08032418.1| GMP synthase protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136337|gb|EFW28324.1| GMP synthase protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 528

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  AH++  +SGG DS      +H  + D      + + I VDH  LR   +++V 
Sbjct: 217 IREQVGDAHVICGLSGGVDSSVAAALVHRAIGD------QLTCIFVDHGLLRAGEREQVE 270

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAARE-------ARYALISEHAK 115
           +  D    + I    V             ++P+       RE       A+  +I     
Sbjct: 271 H--DYAEGMGIRVITVDETERFLSALAGVTEPEAKRKIIGREFIRSFEAAQRRVIEAVGA 328

Query: 116 TINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +   T   D +E+             +        +  DL+  +  P     +
Sbjct: 329 EGGEIRFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLDFELIEPLRELFK 383

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 384 DEVRAIGRELGVP 396


>gi|305663003|ref|YP_003859291.1| GMP synthase (glutamine-hydrolyzing) [Ignisphaera aggregans DSM
           17230]
 gi|304377572|gb|ADM27411.1| GMP synthase (glutamine-hydrolyzing) [Ignisphaera aggregans DSM
           17230]
          Length = 520

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + IE++   +RS V     +L AVSGG DS    + +   + DR        A+ V+H  
Sbjct: 209 NIIENIVNEIRSTVGEDEKVLCAVSGGIDSTTTALLVKKAIGDR------LVAVFVNHGL 262

Query: 62  LRETAKDEVRYVSDVCSRLRI-AHSVVS----WKNSKPQTGLMAAAR---EARYALISEH 113
           LRE    E   V ++   L I    + +        K         R   E    +  + 
Sbjct: 263 LREG---EAEEVLNMLRNLGINPIYIDASKMFLDALKGVRDCEEKRRIIGELFAKIFKDI 319

Query: 114 AKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            ++      +    T+ D +E+ ++          +        +   L L +  P    
Sbjct: 320 VESDKFIKWLAQGTTYPDVIESGFV-----PGADRIKSHHNVAGLPSWLGLKLLEPIKYL 374

Query: 173 RREDIRSFLLQRNISWCED 191
            ++++R+  L+  +   ED
Sbjct: 375 YKDEVRAIALRLGVP--ED 391


>gi|149185324|ref|ZP_01863641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. SD-21]
 gi|148831435|gb|EDL49869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. SD-21]
          Length = 383

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 42/215 (19%)

Query: 2   FLSPIESVRFF-VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            L P  +   F +      + I+VA+SGG DS  +        ++     ++      D+
Sbjct: 6   LLEPALAAGLFDLEKPASESRIVVAMSGGVDSSVVAALAAKSGAEVIGITLQLY----DY 61

Query: 61  CL---RET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----- 109
                R+    A D++     V  RL IAH V   +++  +  +   A E          
Sbjct: 62  GAATGRKGACCAGDDIADARAVADRLGIAHYVSDHESAFREEVVETFADEYLAGRTPVPC 121

Query: 110 -----------ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
                      +   A+ + A  + T H           R       +    +       
Sbjct: 122 IRCNMGPKFTDLFAMARELGADCLATGH--------YVQRLMGPAGPELHRANDPARDQS 173

Query: 159 Y-------DLNLWISRPFLRCRREDIRSFLLQRNI 186
           Y       D   ++  P     +  +R       +
Sbjct: 174 YFLYATTEDQLNFLRFPLGGLPKAQVRELAEAAGL 208


>gi|238926764|ref|ZP_04658524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas flueggei ATCC 43531]
 gi|238885296|gb|EEQ48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas flueggei ATCC 43531]
          Length = 366

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 59/213 (27%), Gaps = 69/213 (32%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------- 65
              ++VA+SGG DS      L     +          + V   L E              
Sbjct: 8   KQRVVVAMSGGVDSSVTAALLQEQGYE---------VVGVTMRLSEEGRDADPDGRSCCS 58

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAREA---------RYALI 110
             + D+ R V+D+   L I H V+ +     Q  +       AR           RY   
Sbjct: 59  LSSVDDARRVADI---LGIPHYVMDFTEPFQQLVIDYFTQEYARGRTPNPCIACNRYIKF 115

Query: 111 SEHA---KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------- 157
                  + + A  I T H           R  R     G G+  +   I          
Sbjct: 116 EGLLGKIRALGAQHIATGHYA---------RITR----TGDGIYHLRKGIDTAKDQSYVL 162

Query: 158 ---LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                 +   +  P    R+++IR       + 
Sbjct: 163 YHLTQKMMDHVLFPLGDYRKDEIRHMAEDYGLP 195


>gi|89054712|ref|YP_510163.1| GMP synthase [Jannaschia sp. CCS1]
 gi|88864261|gb|ABD55138.1| GMP synthase (glutamine-hydrolyzing) [Jannaschia sp. CCS1]
          Length = 535

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E     +R+ V  A ++ A+SGG DS      LH  + D      + + + VDH  LR  
Sbjct: 225 EQAVEAIRAQVGDAKVICALSGGVDSSVTAALLHEAIGD------QLTCVFVDHGLLRLN 278

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK----------NSKPQTGLMAAAREARYALISEHAK 115
              EV  V      + + H + + +           S P+T      R           +
Sbjct: 279 EGAEV--VEMFRDHMNL-HVIHAEEQDLFLGELDGVSDPETKRKIIGRLFIDVFQKYAGQ 335

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+V   S        +        +   + L +  P     ++
Sbjct: 336 IEGADFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLTLVEPLRELFKD 392

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  + 
Sbjct: 393 EVRALGRELGLP 404


>gi|332716432|ref|YP_004443898.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Agrobacterium sp. H13-3]
 gi|325063117|gb|ADY66807.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Agrobacterium sp. H13-3]
          Length = 402

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 61/196 (31%), Gaps = 30/196 (15%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                I+VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 14  PEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 69

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQT--GLMAAAREA--------------RYALISEHA 114
                VC  L I H V+ ++    +T     A A                 ++A +   A
Sbjct: 70  DDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATA 129

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRPFL 170
           + + A  + T H    +   V  +  R    + +         L+        ++  P  
Sbjct: 130 QELGADALATGHYIRSRPNPVAGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLG 189

Query: 171 RCRREDIRSFLLQRNI 186
              + + R+      +
Sbjct: 190 GLSKAETRALAEDMGL 205


>gi|15644564|ref|NP_229617.1| GMP synthase [Thermotoga maritima MSB8]
 gi|170288796|ref|YP_001739034.1| GMP synthase, large subunit [Thermotoga sp. RQ2]
 gi|281412430|ref|YP_003346509.1| GMP synthase, large subunit [Thermotoga naphthophila RKU-10]
 gi|13627216|sp|Q9X2E0|GUAA_THEMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739761|sp|B1LAK3|GUAA_THESQ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|4982402|gb|AAD36883.1|AE001819_6 GMP synthase [Thermotoga maritima MSB8]
 gi|170176299|gb|ACB09351.1| GMP synthase, large subunit [Thermotoga sp. RQ2]
 gi|281373533|gb|ADA67095.1| GMP synthase, large subunit [Thermotoga naphthophila RKU-10]
          Length = 501

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 24/191 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E +R    ++     IL A+SGG DS    + +H  +            + VDH  LR+ 
Sbjct: 194 EKIRHIKETIGNKKAIL-ALSGGVDSSVAAVLVHRAIGK------NLVCVFVDHGLLRKN 246

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
            ++EV  V        +   VV  +          + P+        E    +  E AK 
Sbjct: 247 EREEVERVFK--EHFDMNLVVVDARKRFLEKLRGVTDPEKKRKIIGEEF-IRVFEEEAKK 303

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   ++    + D +E+    +        +        +   +NL +  P     +++
Sbjct: 304 HDVEFLVQGTIYSDVIES----AASGKTTAKIKSHHNVGGLPEKMNLKLVEPLRDLFKDE 359

Query: 177 IRSFLLQRNIS 187
           +R       I 
Sbjct: 360 VRKVGKYLGIP 370


>gi|296109621|ref|YP_003616570.1| GMP synthase, large subunit [Methanocaldococcus infernus ME]
 gi|295434435|gb|ADG13606.1| GMP synthase, large subunit [Methanocaldococcus infernus ME]
          Length = 310

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 30/198 (15%)

Query: 1   MFL--SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     IE     ++  +     ++A+SGG DS    +  H  + D+        A+ V
Sbjct: 1   MFSPEKFIEDAIKEIKEKIGDRKAIIALSGGVDSSVAAVLTHKAIGDK------LVAVFV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAR---EARYAL 109
           D  L R+  ++EV  V     +L +   VV  K       K         +   +    +
Sbjct: 55  DTGLMRKGEREEVERVFR--DQLGLNLIVVDAKERFLEALKGVKDPEEKRKIIGKLFIDI 112

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E A+ + A +++      D +ET           +G   S     + + + L +  P 
Sbjct: 113 FEEIAEKVKAEVLVQGTIAPDWIET-----------EGKIKSHHNVALPHGMVLEVVEPL 161

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R       + 
Sbjct: 162 RELYKDEVREVAKALGLP 179


>gi|15892333|ref|NP_360047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia conorii str. Malish 7]
 gi|20455354|sp|Q92IL0|MNMA_RICCN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|15619478|gb|AAL02948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia conorii str. Malish 7]
          Length = 370

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           + I+VA+SGG DS  +   LH    +     ++      DH +         A  ++   
Sbjct: 14  STIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIYDA 69

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAKTI 117
             V ++L I H V+ ++N   ++ +                    +  ++  + + A+ +
Sbjct: 70  KMVANKLGIPHYVLDYENKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTAREL 129

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L     T   +   ++  P    
Sbjct: 130 GADKLATGHYVRKINGDNGAE--LHTGLDPAKDQSYFLF----TTTKEQLEYLRFPLGGL 183

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            +++ R    +  +   + P + D  F
Sbjct: 184 TKDETRKLASKFGLEVADKPDSQDICF 210


>gi|205822155|sp|Q131Q8|MNMA_RHOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 36/205 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L S   D     ++      DH     R+    A
Sbjct: 7   LEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLY----DHGAATHRKGACCA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 63  GQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRDL 122

Query: 111 SEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
              A+ + A+ + T H       DD    +   + RD  +     +   + + +     +
Sbjct: 123 LATARELGASALATGHYVSSRRLDDGSRALICAADRDRDQSYFLFATTREQLDF-----L 177

Query: 166 SRPFLRCRREDIRSFLLQRNISWCE 190
             P     +   R    Q  +S  +
Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVAD 202


>gi|148255024|ref|YP_001239609.1| GMP synthase [Bradyrhizobium sp. BTAi1]
 gi|146407197|gb|ABQ35703.1| GMP synthase (glutamine-hydrolyzing) [Bradyrhizobium sp. BTAi1]
          Length = 534

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR     E  
Sbjct: 230 IRAQVGKGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLLRLN---EAE 280

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D+      I    V             + P+       R       +E  K   A  
Sbjct: 281 TVVDLFRHHYNIPLVHVDASKLFLGELAGVTDPEQKRKTIGRLFIDVFEAEAKKIGGADF 340

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 341 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPARMNMKLVEPLRELFKDEVRVLG 397

Query: 182 LQRNIS 187
            +  + 
Sbjct: 398 RELGLP 403


>gi|197104883|ref|YP_002130260.1| GMP synthase [Phenylobacterium zucineum HLK1]
 gi|254800109|sp|B4R9R7|GUAA_PHEZH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|196478303|gb|ACG77831.1| GMP synthase [Phenylobacterium zucineum HLK1]
          Length = 520

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    I+  +SGG DS    + +H  + D      + + + VDH  LR     E  
Sbjct: 216 IRDQVGDGRIICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YVSDVCSRL-RIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      I    V               P+T      R        E AK   A  
Sbjct: 267 QVVTMFRDHYNIPLVHVDAAEEFLGALAGVTDPETKRKTIGRLFVEVFDREAAKIEGAAF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S R      +        +   + L +  P     ++++R+  
Sbjct: 327 LAQGTLYPDVIESV---SARGGPSAVIKSHHNVGGLPDYMKLKLVEPLRELFKDEVRALG 383

Query: 182 LQRNISW 188
           ++  +  
Sbjct: 384 VELGLPP 390


>gi|227544860|ref|ZP_03974909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri CF48-3A]
 gi|300909920|ref|ZP_07127380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri SD2112]
 gi|227185134|gb|EEI65205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri CF48-3A]
 gi|300892568|gb|EFK85928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri SD2112]
          Length = 377

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAKTI 117
           + V S++ I +  V+++        K         R          E ++    E+A  +
Sbjct: 60  AKVASKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H  D   D  E   M   R   +       +   + Y     +  P     +
Sbjct: 120 GADYVATGHYADVKRD--ENGRMHLMRAKDQHKDQTYFLSQ-LDYKQLDKVMFPLAGYTK 176

Query: 175 EDIRSFLLQRNIS 187
            +IR    +  ++
Sbjct: 177 PEIRKIAEEAGLA 189


>gi|194468395|ref|ZP_03074381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri 100-23]
 gi|194453248|gb|EDX42146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri 100-23]
          Length = 377

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAKTI 117
           + V S++ I +  V+++        K         R          E ++    E+A  +
Sbjct: 60  AKVASKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H  D   D  E   M   R   +       +   + Y     +  P     +
Sbjct: 120 GADYVATGHYADVKRD--ENGRMHLMRAKDQHKDQTYFLSQ-LDYKQLDKVMFPLAGYTK 176

Query: 175 EDIRSFLLQRNIS 187
            +IR    +  ++
Sbjct: 177 PEIRKIAEEAGLA 189


>gi|148543839|ref|YP_001271209.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri DSM
           20016]
 gi|184153240|ref|YP_001841581.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri JCM 1112]
 gi|227364743|ref|ZP_03848792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM2-3]
 gi|325682630|ref|ZP_08162147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM4-1A]
 gi|166991123|sp|A5VJ48|MNMA_LACRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229486414|sp|B2G6L9|MNMA_LACRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148530873|gb|ABQ82872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri DSM 20016]
 gi|183224584|dbj|BAG25101.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Lactobacillus reuteri JCM 1112]
 gi|227070202|gb|EEI08576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM2-3]
 gi|324978469|gb|EGC15419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus reuteri MM4-1A]
          Length = 377

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAKTI 117
           + V S++ I +  V+++        K         R          E ++    E+A  +
Sbjct: 60  AKVASKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H  D   D  E   M   R   +       +   + Y     +  P     +
Sbjct: 120 GADYVATGHYADVKRD--ENGRMHLMRAKDQHKDQTYFLSQ-LDYKQLDKVMFPLAGYTK 176

Query: 175 EDIRSFLLQRNIS 187
            +IR    +  ++
Sbjct: 177 PEIRKIAEEAGLA 189


>gi|163782973|ref|ZP_02177968.1| GMP synthase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881653|gb|EDP75162.1| GMP synthase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 510

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 31/194 (15%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E V+  +R  V  AH++ A+SGG DS    + +H  + DR           +DH  LR  
Sbjct: 204 EKVKE-IRETVGDAHVIAALSGGVDSTVASVLVHRAIGDR------LHCFFIDHGLLRLG 256

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN--SKPQTGLMAAAREAR-------YALISEHAKT 116
            ++E   V      L +   VV   +   +   G+     + +            E    
Sbjct: 257 EREE---VEKNLRALGLPLKVVDASDLFLERLKGVEDPEEKRKIIGNTFIKVFEREARNV 313

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCR 173
             A  ++    + D +E            KG            +   ++L +  PF    
Sbjct: 314 EGAEFLLQGTLYPDVVE--------SAGIKGSAKIKTHHNVGGLPEKMHLKLLEPFRELF 365

Query: 174 REDIRSFLLQRNIS 187
           ++++R       I 
Sbjct: 366 KDEVREIGKLLGIP 379


>gi|1322852|emb|CAA96927.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 193

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
                 + V  SGG DS  L   L  +L+DR    I+   +S+D  +     D +  V  
Sbjct: 64  FQRGEKVAVGASGGKDSTVLAHMLK-LLNDRYDYGIEIVLLSIDEGIIGYRDDSLATVKR 122

Query: 76  VCSRLRIAHSVVSWKN 91
              +  +   + S+K+
Sbjct: 123 NQQQYGLPLEIFSFKD 138


>gi|317969133|ref|ZP_07970523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0205]
          Length = 397

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 33/198 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDE 69
           +R       + V +SGG DS      L     +     +             L + A   
Sbjct: 28  LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSGKGACCAEGLVDAAG-- 85

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAA------AREARYALISEHAK- 115
                 VC +L + H VV ++    +        G  A       +R  R        + 
Sbjct: 86  ------VCEQLEVPHHVVDFREHFKEQIVDFLVQGYEAGVTPLPCSRCNREVKFGPMLRW 139

Query: 116 ---TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
                    I T H       DQ E    +  R   E+      + D +  +    +  P
Sbjct: 140 AKEERKIDRIATGHYARVRHGDQSENGRHQLLRGLDERKDQSYFLYD-LPQEALGRLVFP 198

Query: 169 FLRCRREDIRSFLLQRNI 186
                + D R    +  +
Sbjct: 199 LGELTKPDTRLEADRHGL 216


>gi|309776979|ref|ZP_07671949.1| GMP synthase, C- domain protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915390|gb|EFP61160.1| GMP synthase, C- domain protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 430

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 22/186 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   +        +   + V+H L R+   + V
Sbjct: 128 LIREQVNDRKVLLALSGGVDSSVVAALLLKAIGK------QLYCVHVNHGLMRKGESESV 181

Query: 71  RYV-SDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
             V  +      + +   S +        ++P+        E       E  K      +
Sbjct: 182 IEVFQNQMDA-NLIYVDASERFLGKLKDVAEPEQKRKIIGAEFIRVFEEEARKLEGIDFL 240

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            K +        +  DL   +  P  +  ++++R+  L
Sbjct: 241 AQGTIYPDIVE------SGTKTAKVVKSHHNVGGLPDDLAFELVEPLRQLFKDEVRACGL 294

Query: 183 QRNISW 188
           +  +  
Sbjct: 295 ELGLPH 300


>gi|167043840|gb|ABZ08529.1| putative PP-loop family protein [uncultured marine crenarchaeote
           HF4000_APKG3E18]
          Length = 268

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 61/182 (33%), Gaps = 37/182 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSRL 80
           +LVA+SGG DS     AL +  +    GK    A++ D+  L   A++E+ Y   +   +
Sbjct: 19  VLVALSGGVDS-----ALVAYSAYAKLGKSAI-AVTADYKTL---AQEELEYAKKISLEI 69

Query: 81  RIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            I H V+ +         K         R      + + AK     +I+     DD    
Sbjct: 70  GIKHIVIEYNELANESFVKNDNNRCFYCRSELSEHLLQVAKEFETDMIVDGTNIDD---- 125

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDP 192
                          L      IL      I  P       ++ +R       +S  + P
Sbjct: 126 ---------------LGDYRPGILALHQNGIRSPLAETGFSKKMVRGTAKSVGLSVYDKP 170

Query: 193 SN 194
           SN
Sbjct: 171 SN 172


>gi|254501298|ref|ZP_05113449.1| GMP synthase, C-terminal domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437369|gb|EEE44048.1| GMP synthase, C-terminal domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 524

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 59/185 (31%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR    +EV 
Sbjct: 220 IRQQVGDKKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLNEAEEV- 272

Query: 72  YVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
            VS       I          +             R+    L  +  +        A  +
Sbjct: 273 -VSMFRDNYNIPLIHADETDLFLGELDGQSDPETKRKIIGKLFIDVFQKHANEIEGAEFL 331

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 332 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGR 388

Query: 183 QRNIS 187
           +  + 
Sbjct: 389 ELGLP 393


>gi|325068144|ref|ZP_08126817.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces oris K20]
          Length = 528

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  AH++  +SGG DS      +H  + D      + + I VDH  LR   +++V 
Sbjct: 217 IREQVGDAHVICGLSGGVDSSVAAALVHRAIGD------QLTCIFVDHGLLRAGEREQVE 270

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAARE-------ARYALISEHAK 115
           +  D    + I    V             ++P+       RE       A+  +I     
Sbjct: 271 H--DYAEGMGIRVITVDETERFLSALAGVTEPEAKRKIIGREFIRSFEAAQRRVIEAVGA 328

Query: 116 TINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +   T   D +E+             +        +  DL+  +  P     +
Sbjct: 329 EGGEIRFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLDFELIEPLRELFK 383

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 384 DEVRAIGRELGVP 396


>gi|319406809|emb|CBI80442.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella sp. 1-1C]
          Length = 409

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 64/219 (29%), Gaps = 54/219 (24%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFL+ ++     +      + ++VA+SGG DS  +   L     D     ++      DH
Sbjct: 1   MFLNSLD-----LPGHPKNSRVVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLY----DH 51

Query: 61  C---LRET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----- 109
                R     A  ++     V   L + H ++ ++    +  +   A    YA      
Sbjct: 52  GAATHRVGACCAGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAES--YAHGETPI 109

Query: 110 -------------ISEHAKTINATLIMTAH---------TFDDQLETVYMRSQRDYAEKG 147
                        +   A  + A  + T H                    RS     ++ 
Sbjct: 110 PCVSCNQTVKFSDLLTTAYELGADALATGHYIRSRVHGAHR------ALFRSLDADRDQS 163

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             L       +     ++  P     +E +R    +  +
Sbjct: 164 YFLFATTQEQI----DYLRFPLGDLSKERVREIATEMGL 198


>gi|300856861|ref|YP_003781845.1| GMP synthase [Clostridium ljungdahlii DSM 13528]
 gi|300436976|gb|ADK16743.1| GMP synthase [Clostridium ljungdahlii DSM 13528]
          Length = 510

 Score = 57.6 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 69/192 (35%), Gaps = 25/192 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++  +R  V    ++ A+SGG DS    + +H  +        + + I VDH  LR+ 
Sbjct: 204 EKIKL-IREKVGNKKVICAMSGGVDSSVAAVLVHKAVGK------QLTCIFVDHGLLRKD 256

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKT 116
             D+V +V     +  +    V+ K+         S P+        E       E  K 
Sbjct: 257 EGDQVEHVFK--KQFDMNFIRVNAKDRFLGKLEGVSDPEKKRKIIGEEFIRVFEEEARKL 314

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            + + ++    + D +E+             +        +  D++  +  P     +++
Sbjct: 315 GDISFLVQGTIYPDVVESGL------GTSATIKSHHNVGGLPEDMDFKLIEPLRELFKDE 368

Query: 177 IRSFLLQRNISW 188
           +R+   +  I  
Sbjct: 369 VRAVGEELGIPH 380


>gi|326774070|ref|ZP_08233352.1| GMP synthase (Glutamine amidotransferase) [Actinomyces viscosus
           C505]
 gi|326636209|gb|EGE37113.1| GMP synthase (Glutamine amidotransferase) [Actinomyces viscosus
           C505]
          Length = 528

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  AH++  +SGG DS      +H  + D      + + I VDH  LR   +++V 
Sbjct: 217 IREQVGDAHVICGLSGGVDSSVAAALVHRAIGD------QLTCIFVDHGLLRAGEREQVE 270

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAARE-------ARYALISEHAK 115
           +  D    + I    V             ++P+       RE       A+  +I     
Sbjct: 271 H--DYAEGMGIRVITVDETERFLNALAGVTEPEAKRKIIGREFIRSFEAAQRRVIEAVGA 328

Query: 116 TINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +   T   D +E+             +        +  DL+  +  P     +
Sbjct: 329 EGGEIRFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLDFELIEPLRELFK 383

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 384 DEVRAIGRELGVP 396


>gi|289191566|ref|YP_003457507.1| GMP synthase, large subunit [Methanocaldococcus sp. FS406-22]
 gi|288938016|gb|ADC68771.1| GMP synthase, large subunit [Methanocaldococcus sp. FS406-22]
          Length = 310

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 114/330 (34%), Gaps = 52/330 (15%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     IE     ++  +     ++A+SGG DS    +  H  + +        +A+ V
Sbjct: 1   MFNPQKFIEEAVEEIKQQIKDRRAIIALSGGVDSSVAAVLTHKAIGN------NLTAVFV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAR---EARYAL 109
           D  L R+  ++EV        +L +   VV  K+      K  T      +   +    +
Sbjct: 55  DTGLMRKGEREEVE--RTFRDKLGLNLIVVDAKDRFLEALKGVTDPEEKRKIIGKLFIDV 112

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E A+ I A +++      D +ET           +G   S     + + + L +  P 
Sbjct: 113 FEEVAEEIKAEVLVQGTIAPDWIET-----------QGKIKSHHNVALPHGMVLEVVEPL 161

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKM 220
               ++++R    +  +         D    R         VRV   V +  L+ +  + 
Sbjct: 162 RELYKDEVRLLAKELGLP--------DSIVYRQPFPGPGLAVRVLGEVTEEKLN-ICREA 212

Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
               +  +K  N    L   +  V       +  D    +  +   +++   A+      
Sbjct: 213 NAIVEEEIKKANLDKDLWQYFAVVLDCKATGVKGDEREYNWIVALRMVKSLDAMTAHVPE 272

Query: 281 LPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
           LP +  ++R+   + S      ++ RVV D
Sbjct: 273 LP-FDLLKRISKRITSEIP---NVARVVFD 298


>gi|260752750|ref|YP_003225643.1| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552113|gb|ACV75059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 370

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 37/194 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETA---KDEVRYVS 74
            I+VA+SGG DS  +     +  ++     ++      DH     R+ +     ++R   
Sbjct: 15  RIVVAMSGGVDSSVVAALAKATGAETIGITLQLY----DHGAAVGRKGSCCAGKDIRDAR 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA------AARE----------ARYALISEHAKTIN 118
            V  ++ I H V  ++N+  ++ +        A R            ++  +   A+ + 
Sbjct: 71  AVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLNVARELG 130

Query: 119 ATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  + T H       +D++E    R+     ++   L       L     ++  P     
Sbjct: 131 ADCLATGHYVRRLVNNDRVE--MHRALDPARDQSYFLFATTKEQL----DYLRFPLGGLP 184

Query: 174 REDIRSFLLQRNIS 187
           +  +R    +  +S
Sbjct: 185 KPKVREMAAELGLS 198


>gi|295402654|ref|ZP_06812599.1| GMP synthase, large subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112492|ref|YP_003990808.1| GMP synthase, large subunit [Geobacillus sp. Y4.1MC1]
 gi|294975311|gb|EFG50944.1| GMP synthase, large subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217593|gb|ADP76197.1| GMP synthase, large subunit [Geobacillus sp. Y4.1MC1]
          Length = 512

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 28/196 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+S    +R LV    +L A+SGG DS    + +H  + D      + + I VDH  L
Sbjct: 202 SFIDSEVRKIRELVGDKKVLCALSGGVDSSVAAVLVHRAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALIS 111
           R+    E   V           +V+     +           P+        E  Y    
Sbjct: 256 RKG---EAESVMKTFRE-GFQMNVIKVDAKERFLSKLKGVIDPEQKRKIIGNEFIYVFDD 311

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E AK      ++    + D +E            + +        +  D+   +  P   
Sbjct: 312 EAAKLEGIEFLVQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMKFKLIEPLKT 365

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R+   +  + 
Sbjct: 366 LFKDEVRALGTELGLP 381


>gi|150398701|ref|YP_001329168.1| GMP synthase [Sinorhizobium medicae WSM419]
 gi|226739739|sp|A6UFA3|GUAA_SINMW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|150030216|gb|ABR62333.1| GMP synthase, large subunit [Sinorhizobium medicae WSM419]
          Length = 520

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R+ V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE 
Sbjct: 215 AIRNQVGDKKVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEA 265

Query: 71  RYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINAT 120
             V  +      L + H   S +        S P+T      R        E  K   A 
Sbjct: 266 ANVVAMFKEHYNLHLLHVDASDRFIGELEGVSDPETKRKIIGRLFIEVFEEEAGKLGGAD 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   +N+ +  P     ++++R  
Sbjct: 326 FLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRVL 382

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 383 GRELGLP 389


>gi|75676328|ref|YP_318749.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrobacter winogradskyi Nb-255]
 gi|91206813|sp|Q3SQP4|GUAA_NITWN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|74421198|gb|ABA05397.1| GMP synthase (glutamine-hydrolyzing) [Nitrobacter winogradskyi
           Nb-255]
          Length = 535

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    I +H  + D      + + + VDH  LR   KDE +
Sbjct: 231 IRTQVGKGRVICGLSGGVDSSVAAILIHEAIGD------QLTCVFVDHGMLR---KDEGK 281

Query: 72  YVSDVCSRL-RIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V D+      I    V               P+       R       +E  K   A  
Sbjct: 282 TVVDLFRHHYNIPLIHVDASKKFLSELAGVTDPEAKRKTIGRLFIDVFEAEAKKIGGADF 341

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R+  
Sbjct: 342 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPDRMNMKLVEPLRELFKDEVRALG 398

Query: 182 LQRNIS 187
            +  + 
Sbjct: 399 RELGLP 404


>gi|241761211|ref|ZP_04759299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283856328|ref|YP_162504.2| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|292495018|sp|Q5NPG7|MNMA_ZYMMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|241374118|gb|EER63615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|283775325|gb|AAV89393.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 370

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 69/194 (35%), Gaps = 37/194 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETA---KDEVRYVS 74
            I+VA+SGG DS  +     +  ++     ++      DH     R+ +     ++R   
Sbjct: 15  RIVVAMSGGVDSSVVAALAKATGAETIGITLQLY----DHGAAVGRKGSCCAGKDIRDAR 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA------AARE----------ARYALISEHAKTIN 118
            V  ++ I H V  ++N+  ++ +        A R            ++  +   A+ + 
Sbjct: 71  AVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLNVARELG 130

Query: 119 ATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  + T H       +D++E    R+     ++   L       L     ++  P     
Sbjct: 131 ADCLATGHYVRRLVNNDRVE--MHRALDPARDQSYFLFATTKEQL----DYLRFPLGGLP 184

Query: 174 REDIRSFLLQRNIS 187
           +  +R    +  +S
Sbjct: 185 KPKVREMAAELGLS 198


>gi|317495071|ref|ZP_07953443.1| tRNA methyl transferase [Gemella moribillum M424]
 gi|316914843|gb|EFV36317.1| tRNA methyl transferase [Gemella moribillum M424]
          Length = 370

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 40/199 (20%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIKFSAISVDHCLRETAK 67
           +     ++V +SGG DS      L           + +      +   +         A+
Sbjct: 1   MSNGKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDDRGGCV---------AE 51

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALIS 111
            +   V  VC +L I +  ++++     K  T  +   ++ R             + +  
Sbjct: 52  KDYEDVIKVCEQLDIPYYSINFEKEYWNKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFL 111

Query: 112 EHAKTINATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           E+A+ + A  + T H     D+  + + +R   +  ++   LS +    + +    I  P
Sbjct: 112 EYAEDLGADYVATGHYARVKDEDNQRLLLRGVDNNKDQTYFLSQLKQHQIKN----ILFP 167

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++D+R    +  ++
Sbjct: 168 VGELEKKDVRRIAEEAGLA 186


>gi|218516809|ref|ZP_03513649.1| hypothetical protein Retl8_26008 [Rhizobium etli 8C-3]
          Length = 204

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 16/156 (10%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             +  VR        L      L+ +SGG DS   L+AL   L  R    ++  A ++D 
Sbjct: 44  RLLRQVRQAFDDFDMLKGQKRWLIGLSGGKDS-YGLLALLLDLQWRGLLPVELIACNLDQ 102

Query: 61  CLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYALISE 112
             +       ++V  D  +R+ + H +       +  +         +     R   +  
Sbjct: 103 G-QPN---FPKHVLPDYLTRIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGNLYR 158

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
            A+      ++  H  +D LET +M          M
Sbjct: 159 IAREEGCDALVLGHHREDILETFFMNFFHGGRLASM 194


>gi|239825809|ref|YP_002948433.1| GMP synthase [Geobacillus sp. WCH70]
 gi|239806102|gb|ACS23167.1| GMP synthase, large subunit [Geobacillus sp. WCH70]
          Length = 512

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 28/196 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+S    +R LV    +L A+SGG DS    + +H  + D      + + I VDH  L
Sbjct: 202 SFIDSEVRKIRELVGDKKVLCALSGGVDSSVAAVLVHRAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALIS 111
           R+    E   V           +V+     +           P+        E  Y    
Sbjct: 256 RKG---EAESVMKTFRE-GFHMNVIKVDAKERFLSKLKGVTDPEQKRKIIGNEFIYVFDD 311

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E AK      ++    + D +E            + +        +  D+   +  P   
Sbjct: 312 EAAKLEGIEFLVQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMKFKLIEPLNT 365

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R+   +  + 
Sbjct: 366 LFKDEVRALGTELGLP 381


>gi|15922676|ref|NP_378345.1| GMP synthase [Sulfolobus tokodaii str. 7]
 gi|44887904|sp|Q96Y23|GUAAB_SULTO RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|15623466|dbj|BAB67454.1| 370aa long hypothetical GMP synthase [Sulfolobus tokodaii str. 7]
          Length = 370

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 25/193 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             ++ +   ++ +V    I  AVSGG DS    +  + +L D+         + +D   L
Sbjct: 7   KFVDEISPQLKEIVDGRAIA-AVSGGVDSTTAAVLSYKILGDKVIP------VMIDTGFL 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREAR---YALISEHA 114
           RE    E   V ++   L +   V+  +       +  +      ++ R   Y  +S   
Sbjct: 60  REN---EAENVKNMLKDL-MPLQVIDEREKFISSLEGMSDAEEKRKKFRQLFYDTLSRIV 115

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  ++      D +ET     Q     +   L  +      +    +  P     +
Sbjct: 116 KEFNAKYLIQGTIAADWVET-----QGGIKTQHNVLVQLGIDTEKEWGFKVVEPLADLYK 170

Query: 175 EDIRSFLLQRNIS 187
           +++R+      + 
Sbjct: 171 DEVRALAKYLGLP 183


>gi|218675488|ref|ZP_03525157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli GR56]
          Length = 399

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+ + + +  G   +      D +            
Sbjct: 126 KELGADALATGH---------YIRSRPNPSLEHPGRRALFRPADADRDQSYFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R    +  +
Sbjct: 177 IDYLRFPLGGLPKAETRRLAEEMGL 201


>gi|126726432|ref|ZP_01742273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
 gi|126704295|gb|EBA03387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2150]
          Length = 377

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 73/232 (31%), Gaps = 44/232 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  +P+ S+ F          ++VA+SGG DS  +   L     D     ++      DH
Sbjct: 1   MLDTPLNSLGFA--KAPADTRVVVAMSGGVDSSVVAAVLAEQGYDVVGVTLQLY----DH 54

Query: 61  CLRET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---------- 102
                        A  ++     V   +   H V+ ++N   +  +   A          
Sbjct: 55  G--AALAKKGACCAGRDIHDARRVAETMGFPHYVLDYENKFKEAVIDEFADSYLAGATPV 112

Query: 103 ------REARYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLS 151
                    ++  + E AK ++A  + T H       D + E    ++     ++   L 
Sbjct: 113 PCIRCNERVKFKDLLETAKDLDADCMATGHYIQRMMGDTKAE--LHQAADGNRDQSYFLF 170

Query: 152 GMCDTILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                   D   ++  P      + + R+   +  +   + P + D  F   
Sbjct: 171 STKQ----DQLDYLRFPLGHLTSKAETRALAAKYGLPVADKPDSQDICFVPN 218


>gi|225869459|ref|YP_002745407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. zooepidemicus]
 gi|259495839|sp|C0MGQ2|MNMA_STRS7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225702735|emb|CAX00880.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 374

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 37/196 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 6   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 57

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 58  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYA 117

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            T+ A  + T H    Q+   E   +   R + +       +       L   +  P   
Sbjct: 118 MTLGADYVATGHYA--QIKRDENGVVHMLRGFDKGKDQTYFLSQLSQKQLQKTMF-PLGH 174

Query: 172 CRREDIRSFLLQRNIS 187
            ++ ++R+   Q  ++
Sbjct: 175 LQKSEVRAIAEQAGLA 190


>gi|239828143|ref|YP_002950767.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
 gi|239808436|gb|ACS25501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. WCH70]
          Length = 370

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 30/191 (15%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS      L     D      +++       +        TA ++  
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDDTNDDGVC-------TATEDYE 54

Query: 72  YVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAK 115
            V  V ++L I +  V+++     +  T  +   +  R             +    ++A 
Sbjct: 55  DVKRVANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYAL 114

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           +++A  I T H      E   +   R           +   +  +    +  P     ++
Sbjct: 115 SLDADYIATGHYARISRENGQIALLRGKDPNKDQTYFLSQ-LTAEHLSKVLFPIGELTKD 173

Query: 176 DIRSFLLQRNI 186
           ++R    + N+
Sbjct: 174 EVRKIAQELNL 184


>gi|325282941|ref|YP_004255482.1| GMP synthase (glutamine-hydrolyzing) [Deinococcus proteolyticus
           MRP]
 gi|324314750|gb|ADY25865.1| GMP synthase (glutamine-hydrolyzing) [Deinococcus proteolyticus
           MRP]
          Length = 514

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 24/183 (13%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYV 73
            +     +L+ +SGG DS  L + L   + DR       +A+ VDH  LR     E   V
Sbjct: 215 QVGSEGRVLLGISGGVDSSTLALLLSRAVGDR------LTAVFVDHGLLRLN---EREQV 265

Query: 74  SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                   +    V  +          S P+       RE       E  K      +  
Sbjct: 266 ETALRGAGVNVVTVDAREEFMHHLDGVSDPEQKRKIIGREFIRVFDRETEKYGPFEFLAQ 325

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
              + D +E+             +        +  DL   +  PF    ++++R      
Sbjct: 326 GTLYPDVIES-----AGGEGAANIKSHHNVGGLPEDLAFKLVEPFRTLFKDEVREIAKLL 380

Query: 185 NIS 187
            + 
Sbjct: 381 GLP 383


>gi|288559923|ref|YP_003423409.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
 gi|288542633|gb|ADC46517.1| PP-loop family protein [Methanobrevibacter ruminantium M1]
          Length = 359

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 56/192 (29%), Gaps = 39/192 (20%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            IE V+  ++       I +A S G+DS  L                   AI+ D+ +  
Sbjct: 6   KIEKVKQILKDY---KKIALAFSAGADSTLLAYLAKE-------SDCDVLAITYDNQIFP 55

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTIN 118
                + +       L I H ++       +  +          R   Y  I + A    
Sbjct: 56  E--GFLEFAKRRADELGIKHEIIENSFLMIYDVAHNTPQRCLTCRRLMYGSIKQVANERG 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE--D 176
             +I+  +   D                   +      ++   N  I  P +    E  +
Sbjct: 114 YDIIIDGNNITDL------------------IHDRPGILMKYANG-IESPLIDANLESYE 154

Query: 177 IRSFLLQRNISW 188
           I  FL + +I +
Sbjct: 155 IHDFLEENDIEY 166


>gi|149185056|ref|ZP_01863373.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Erythrobacter sp. SD-21]
 gi|148831167|gb|EDL49601.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Erythrobacter sp. SD-21]
          Length = 524

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH L R     E  
Sbjct: 220 IRAQVGDGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRMN---EAE 270

Query: 72  YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA--REARY-------ALISEHAKTI-NAT 120
            V  +      I    V+ +      GL       + R         L    AK I  A 
Sbjct: 271 QVVTLFRDHYNIPLVHVNAEEMFLG-GLEGQTDPEKKRKFIGGAFIDLFEAEAKKIGGAD 329

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   +N+ +  P     ++++R  
Sbjct: 330 FLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMELVEPLRELFKDEVRDL 386

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 387 GRELGLP 393


>gi|197118358|ref|YP_002138785.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter bemidjiensis Bem]
 gi|197087718|gb|ACH38989.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter bemidjiensis Bem]
          Length = 359

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 63/200 (31%), Gaps = 43/200 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----------D 68
              ILVA+SGG DS      L     D     ++          R  +            
Sbjct: 7   KKQILVAMSGGVDSSVTAALLKEQGHDVMGVSLQLYE-------RPESTPSGGKTCCSLT 59

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAARE----AR------YALISE 112
           +V   + V  RL I   V+  +    +      T   AA R     AR      + L+ +
Sbjct: 60  DVMDAARVAKRLGIPFEVIDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLD 119

Query: 113 HAKTINATLIMTAHTF---DDQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            A +  A L+ T H      D  E +   ++      ++   L GM    L      I  
Sbjct: 120 MAASFGADLLATGHYARIEQD-AEEIYQLLKGLDPGKDQSYFLFGMNQEQLSR----IVF 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     +  +R    + N+ 
Sbjct: 175 PVGNLEKRVVREHAARFNLP 194


>gi|312865771|ref|ZP_07725993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus downei F0415]
 gi|311098646|gb|EFQ56868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus downei F0415]
          Length = 374

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 68/197 (34%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 6   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 57

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 58  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAKYRAGRTPNPDVMCNKEIKFKAFLDYA 117

Query: 115 KTINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            ++ A  + T H      D+  TV  +R   +  ++   LS +    L      +  P  
Sbjct: 118 MSLGADYVATGHYAQVSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQK----VMFPLG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 174 HLEKPEVRKIAEEAGLA 190


>gi|227824153|ref|YP_002828126.1| GMP synthase [Sinorhizobium fredii NGR234]
 gi|254800111|sp|C3MCS5|GUAA_RHISN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|227343155|gb|ACP27373.1| glutamine-hydrolyzing GMP synthase [Sinorhizobium fredii NGR234]
          Length = 520

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE 
Sbjct: 215 AIRKQVGGKKVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEA 265

Query: 71  RYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINAT 120
             V  +      L + H   S +        S P+T      R        E  K   A 
Sbjct: 266 ANVVAMFQEHYNLHLLHIDASDRFIGELEGVSDPETKRKIIGRLFIEVFEEEAKKLGGAD 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   +N+ +  P     ++++R  
Sbjct: 326 FLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRVL 382

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 383 GRELGLP 389


>gi|332523636|ref|ZP_08399888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314900|gb|EGJ27885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 373

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLE------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+E         +R   +  ++   LS +    L         P
Sbjct: 117 LNLGADYVATGHYA--QVERDSDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKT----LFP 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++  +R    +  ++
Sbjct: 171 LGHLQKSQVREIAERAGLA 189


>gi|218295964|ref|ZP_03496744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus aquaticus Y51MC23]
 gi|218243702|gb|EED10230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus aquaticus Y51MC23]
          Length = 371

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 62/200 (31%), Gaps = 48/200 (24%)

Query: 22  ILVAVSGGSDSMGLLIALH-----------SVLSDRSFGKIKFSAISVDHCLR------- 63
           +LVA+SGG DS      L                D     ++  A       R       
Sbjct: 5   VLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPDLPPVSLETGAA------RAWESCCT 58

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAR------EAR------Y 107
             A  E R V+D+   L I   ++ ++    +      L   AR       AR      +
Sbjct: 59  PDAAYEARRVADL---LGIPFYLLDYREVFEEAIIAPFLEDYARGRTPNPCARCNTFVKF 115

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             + + A+ +    + T H    + E   +R      ++   L G     L      +  
Sbjct: 116 GALLKQARRLGLDYVATGHYVRREGE-ALLRGLDKEKDQSYFLWGTPKEALP----HLLF 170

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R    +  + 
Sbjct: 171 PVGHLTKKEVRQIAQEAGLP 190


>gi|225569309|ref|ZP_03778334.1| hypothetical protein CLOHYLEM_05391 [Clostridium hylemonae DSM
           15053]
 gi|225162108|gb|EEG74727.1| hypothetical protein CLOHYLEM_05391 [Clostridium hylemonae DSM
           15053]
          Length = 272

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 28/175 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCSRL 80
           ++VA SGG+DS  LL A      +        + ++    L   +  +  R V+     L
Sbjct: 23  VVVAFSGGADSALLLRAACDAALENGTDVYAVTVMT---KLHPGSDLDTARRVAREMGAL 79

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEH---AKTINATLIMTAHTFDDQLETVYM 137
                +     +  +   +      + ++  +    A+T+N   ++     DD  E    
Sbjct: 80  HRVLEIDELDEAGIKENPVDRCYRCKKSIFRKIRALAETLNVRCVLEGTNEDDLHE---- 135

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCE 190
                      GL  + +       L I  P       ++++R    +R +S  E
Sbjct: 136 --------YRPGLKALKE-------LRILSPLAQCHITKQEVRELARRRGVSVAE 175


>gi|23012016|ref|ZP_00052207.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 403

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 49/211 (23%)

Query: 15  SLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET--- 65
            L  P H   ++VA+SGG DS  +   L     D     ++      DH     R+    
Sbjct: 23  DLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRKGACC 78

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYAL 109
           A  ++     V   L I H V+ +++   ++ +   A                R  ++  
Sbjct: 79  AGRDIHDARAVAETLGIPHYVLDYEDKFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 138

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------Y 159
           +   A+ + A  + T H            + R  AE G GL    D              
Sbjct: 139 LLALARDLGAEALATGHYV----------ASRPLAEGGRGLFRALDPARDQSYFLYATTP 188

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           +   ++  P     +++ R+   +  ++  +
Sbjct: 189 EQLAFLRFPLGERPKDETRALARELGLAVAD 219


>gi|298345340|ref|YP_003718027.1| GMP synthase (glutamine-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|298235401|gb|ADI66533.1| GMP synthase (glutamine-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
          Length = 528

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + I VDH  LR   +++V 
Sbjct: 217 IRQRVGDAQVICGLSGGVDSSVAAALVHKAIGD------QLTCIFVDHGLLRAGEREQVE 270

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQT-----------GLMAAAREARYALIS 111
              D  + + I    V             S+P+               AA RE    +  
Sbjct: 271 --RDYAANMGIRVKSVDESARFLGALAGVSEPEQKRKIIGREFIRSFEAAQREL---VAE 325

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A       ++    + D +E+             +        +  DL   +  P  +
Sbjct: 326 IGASGGEVKFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLKFELIEPLRK 380

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R+   +  + 
Sbjct: 381 LFKDEVRALGRELGLP 396


>gi|188582356|ref|YP_001925801.1| GMP synthase [Methylobacterium populi BJ001]
 gi|179345854|gb|ACB81266.1| GMP synthase, large subunit [Methylobacterium populi BJ001]
          Length = 521

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R    +EV 
Sbjct: 217 IREQVGTEKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLMRLGEGEEV- 269

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V  ++           P+       R       +E  K   A  +
Sbjct: 270 -VRLFRDHYNIPLVHVEAQDLFIGALEGVDDPEVKRKTIGRLFIDVFEAEAKKIGGAAFL 328

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 329 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMRLVEPLRELFKDEVRLLGK 385

Query: 183 QRNIS 187
           +  + 
Sbjct: 386 ELGLP 390


>gi|329767202|ref|ZP_08258729.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341]
 gi|328836869|gb|EGF86516.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341]
          Length = 370

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 71/193 (36%), Gaps = 36/193 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYV 73
             ++V +SGG DS      L     D      +++ +     + +       A+ +   V
Sbjct: 5   KKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDDRGVCL-------AEKDYEDV 57

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC +L I +  ++++     K  T  +   ++ R             + +  E+A+ +
Sbjct: 58  IKVCEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDL 117

Query: 118 NATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H     D   E + +R   +  ++   LS +    + +    I  P     +
Sbjct: 118 GADYVATGHYARVKDVDGERLMLRGVDNNKDQTYFLSQLKQHQIKN----ILFPVGELEK 173

Query: 175 EDIRSFLLQRNIS 187
           +D+R    +  ++
Sbjct: 174 KDVRKIAEEAGLA 186


>gi|322412887|gb|EFY03795.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 373

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHTFDDQL---ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H    Q+   E   +   R           +       L   +  P    ++
Sbjct: 120 GADYVATGHYA--QVKRDEDGVVHMLRGADNGKDQTYFLSQLSQKQLQKTLF-PLGHLQK 176

Query: 175 EDIRSFLLQRNIS 187
            ++R    +  ++
Sbjct: 177 PEVRQIAERAGLA 189


>gi|241889855|ref|ZP_04777153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gemella haemolysans ATCC 10379]
 gi|241863477|gb|EER67861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gemella haemolysans ATCC 10379]
          Length = 370

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 71/193 (36%), Gaps = 36/193 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYV 73
             ++V +SGG DS      L     D      +++ +     + +       A+ +   V
Sbjct: 5   KKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDDRGVCL-------AEKDYEDV 57

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC +L I +  ++++     K  T  +   ++ R             + +  E+A+ +
Sbjct: 58  IKVCEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDL 117

Query: 118 NATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H     D   E + +R   +  ++   LS +    + +    I  P     +
Sbjct: 118 GADYVATGHYARVKDVDGERLMLRGVDNNKDQTYFLSQLKQHQIKN----ILFPVGELEK 173

Query: 175 EDIRSFLLQRNIS 187
           +D+R    +  ++
Sbjct: 174 KDVRKIAEEAGLA 186


>gi|254294555|ref|YP_003060578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hirschia baltica ATCC 49814]
 gi|254043086|gb|ACT59881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hirschia baltica ATCC 49814]
          Length = 409

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 47/199 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRET----AKDEVRYVS 74
            ++ A+SGG DS  +   LH    D     ++      DH   L++     A  ++    
Sbjct: 41  RVVAAMSGGVDSTVVAALLHHAGYDVVGVTLQLY----DHGAALKKQGACCAGQDIHDAR 96

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA-------------R---EARYALISEHAKTIN 118
             C  L I H V+ +++   +  +   A             R     ++  + E +K + 
Sbjct: 97  RACDALGIPHYVLDYESRFKEQVMEDFADTYLAGSTPIPCVRCNQTVKFRDLLETSKDLG 156

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNLWISRP 168
           A  + T H             +R   E G  L+   D             ++   ++  P
Sbjct: 157 ADCMATGH-----------YIRRVVGENGPELARAADPDKDQSYFLFATTHEQLDYLRFP 205

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +E  R       + 
Sbjct: 206 LGGMNKESTRKVASALGLE 224


>gi|294500187|ref|YP_003563887.1| hypothetical protein BMQ_3431 [Bacillus megaterium QM B1551]
 gi|294350124|gb|ADE70453.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
          Length = 269

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 37/201 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E +   +R +     ++VA SGG DS  LL          + G     A++ D 
Sbjct: 1   MLGKKYEILTSILRDM---ESVVVAFSGGVDSTFLLKVAVE-----TLGNENVIAVTADS 52

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHA 114
               +++ E   V  +  ++ + H ++          S+         + + +  +    
Sbjct: 53  ETYPSSELEEAKV--LARQIGVRHQIIETSELAIPGYSENNKNRCYFCKSSLFDHLKPII 110

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RC 172
           +      I+     DD      M   R          GM           I  P L    
Sbjct: 111 EEYQFKTIVYGAIADD------MNEHR---------PGMKAAKEKG----IRGPLLEANL 151

Query: 173 RREDIRSFLLQRNISWCEDPS 193
            +++IR    Q  +     PS
Sbjct: 152 FKKEIRELSQQLELPTWNKPS 172


>gi|167042206|gb|ABZ06938.1| putative tRNA methyl transferase [uncultured marine crenarchaeote
           HF4000_ANIW93I24]
          Length = 268

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 37/197 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E +   +        +LVA+SGG DS    +  +S  +      I  +A   D+  L   
Sbjct: 4   EQLTKLLNWFDGKNSVLVALSGGVDS---ALVAYSAYAKLGKSAISVTA---DYKTL--- 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINA 119
           A++E+ Y   +   + I H V+ +         K         R      + + AK    
Sbjct: 55  AQEELEYAKKISLEIGIKHIVIEYNELANESFVKNDNNRCFYCRSELSEHLLQVAKEFET 114

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDI 177
            +I+     DD                   L      IL      I  P    +  ++ +
Sbjct: 115 DMIVDGTNIDD-------------------LGDYRPGILALHQNGIRSPLAETKFSKKMV 155

Query: 178 RSFLLQRNISWCEDPSN 194
           R       +S  + PSN
Sbjct: 156 REVAKNVGLSVYDKPSN 172


>gi|46202527|ref|ZP_00053063.2| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 373

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 62/207 (29%), Gaps = 57/207 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHS----------VLSDRSFGKIKFSAISVDHCLRET---AK 67
            ++VA+SGG DS  +   L             L D +   I+  A       R     A 
Sbjct: 14  RVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGAC------RPNTCCAG 67

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALIS 111
            ++     V   L I H V+ ++ +  +  +   A                R  ++  + 
Sbjct: 68  KDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEAKTPVPCIECNRTVKFRDLL 127

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDL 161
             AK + A  + T H             +R    +G  +    D                
Sbjct: 128 GVAKDLGADALATGH-----------YVRRRSGPQGPEMWAGRDPGRDQSYFLYATTRAQ 176

Query: 162 NLWISRPFLRCR-REDIRSFLLQRNIS 187
             ++  P      +E+ R+   + ++ 
Sbjct: 177 LDFLRFPLGDMSGKEETRAIAARHHLP 203


>gi|288958853|ref|YP_003449194.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Azospirillum sp. B510]
 gi|288911161|dbj|BAI72650.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Azospirillum sp. B510]
          Length = 391

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 61/207 (29%), Gaps = 47/207 (22%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRE----TA 66
           +        ++VA+SGG DS      L     D     ++      DH   L++     A
Sbjct: 6   LSKRPQDTRVVVAMSGGVDSSVTAAVLREEGYDVVGITLQLY----DHGLALQKPGACCA 61

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS--------------KPQTGLMAAAREARYAL--I 110
             ++     V  R+ I H V+ ++                + +T +       R     +
Sbjct: 62  GQDIYDARQVADRIGIPHYVLDYEGRFSQDVMDDFADSYLRGETPIPCVRCNQRVKFRDL 121

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI----------LYD 160
              A+ + A  + T H             +R    +G  L    D              +
Sbjct: 122 LNTARDLGADALATGH-----------YVRRIAGPRGAELHRAVDPAKDQSYFLFATTRE 170

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
              ++  P     + + R+   +  + 
Sbjct: 171 QLEFLRFPLGGLTKPETRALAGRHGLE 197


>gi|253699615|ref|YP_003020804.1| tRNA-specific 2-thiouridylase MnmA [Geobacter sp. M21]
 gi|251774465|gb|ACT17046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M21]
          Length = 355

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 39/195 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR----ETAKDEVRYV 73
               + VA+SGG DS  +   L    ++     +K  A       R      AK + + V
Sbjct: 6   KGRKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFA-------RDGEDPQAKGDAQIV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAA-------------REARY---ALISEHAKTI 117
           ++    L I   +V  +    +  +                 R  RY    L+ + A  +
Sbjct: 59  AEY---LGIEFHLVHLEEEFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDKALEL 115

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC- 172
            A  + T H    + DD      +++     ++   L  +    L      +  P     
Sbjct: 116 GAEYLATGHYVRTSRDDGGSYHLLKAAFLAKDQSYFLYTLTQKQLS----HVVFPLGDMP 171

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 172 SKDEVRRLAEKFGLP 186


>gi|315640033|ref|ZP_07895158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus italicus DSM 15952]
 gi|315484161|gb|EFU74632.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus italicus DSM 15952]
          Length = 378

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 13  RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYKDV 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A  +
Sbjct: 65  AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALDL 124

Query: 118 NATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+   T  +R   +  ++   LS +    L         P     
Sbjct: 125 GADYVATGHYAQVVRDEDGLTHMLRGVDNNKDQTYFLSQLSQEQLAKTMF----PLGGME 180

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   + N++
Sbjct: 181 KSEVRAIAQRANLA 194


>gi|304390896|ref|ZP_07372848.1| exopolyphosphatase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304325779|gb|EFL93025.1| exopolyphosphatase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 528

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + I VDH  LR   +++V 
Sbjct: 217 IRQRVGDAQVICGLSGGVDSSVAAALVHKAIGD------QLTCIFVDHGLLRAGEREQVE 270

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQT-----------GLMAAAREARYALIS 111
              D  + + I    V             S+P+               AA RE    +  
Sbjct: 271 --RDYAANMGIRVKSVDESARFLGALAGVSEPEQKRKIIGREFIRSFEAAQREV---VAE 325

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A       ++    + D +E+             +        +  DL   +  P  +
Sbjct: 326 IGASGGEVKFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLKFELIEPLRK 380

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R+   +  + 
Sbjct: 381 LFKDEVRALGRELGLP 396


>gi|229542570|ref|ZP_04431630.1| GMP synthase, large subunit [Bacillus coagulans 36D1]
 gi|229326990|gb|EEN92665.1| GMP synthase, large subunit [Bacillus coagulans 36D1]
          Length = 517

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 216 IRQTVGNKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V  K          S P+        E  Y    E AK      
Sbjct: 267 SVMKTFSEGFNMNVIKVDAKERFLKKLKGVSDPEQKRKIIGNEFIYVFDDEAAKLEGIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 327 LAQGTLYTDVIE------SGTTTAQTIKSHHNVGGLPEDMQFTLIEPLNTLFKDEVRAVG 380

Query: 182 LQRNIS 187
            +  I 
Sbjct: 381 TELGIP 386


>gi|268318799|ref|YP_003292455.1| GMP synthase [Lactobacillus johnsonii FI9785]
 gi|262397174|emb|CAX66188.1| GMP synthase [Lactobacillus johnsonii FI9785]
          Length = 517

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 216 IRQKVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 269

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 270 --QALNKDLGVNIIRVNAQERFLNRLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 328 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPEDMHFELIEPLRKLFKDEVRELGE 381

Query: 183 QRNISW 188
           +  I  
Sbjct: 382 KLGIPH 387


>gi|227888915|ref|ZP_04006720.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850503|gb|EEJ60589.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus johnsonii ATCC 33200]
          Length = 517

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 216 IRQKVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 269

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 270 --QALNKDLGVNIIRVNAQERFLNRLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 328 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPEDMHFELIEPLRKLFKDEVRELGE 381

Query: 183 QRNISW 188
           +  I  
Sbjct: 382 KLGIPH 387


>gi|298372999|ref|ZP_06982989.1| GMP synthase [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275903|gb|EFI17454.1| GMP synthase [Bacteroidetes oral taxon 274 str. F0058]
          Length = 511

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L  +SGG DS  + + L   +        + + + +DH  LR   KDE  
Sbjct: 210 IRRTVGDRKVLCGLSGGVDSTVVAVLLQKAIGQ------QLTCMFIDHGLLR---KDEGE 260

Query: 72  YVSDVCSRL-RIAHSVVSWKNSKPQTG-LMAAA--REAR--------YALISEHAKTINA 119
            V   C  L  I  +VV     +   G L   A   + R        Y    E  K    
Sbjct: 261 QVMQTCGDLFGI--NVVKIDAKQRFLGKLEGVADPEKKRKIIGGEFVYCFDEESKKLGEF 318

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +  D+   +  P  +  ++++R+
Sbjct: 319 DFLAQGTLYSDVVE------SGTNTAQTIKTHHNVGGLPKDMKFKLIEPLRKLFKDEVRA 372

Query: 180 FLLQRNISW 188
                 I  
Sbjct: 373 LGEALGIPH 381


>gi|225871462|ref|YP_002747409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. equi 4047]
 gi|254811462|sp|C0MB53|MNMA_STRE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225700866|emb|CAW95613.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equi subsp. equi 4047]
          Length = 374

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 67/199 (33%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 6   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 57

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 58  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYA 117

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H    Q+   E   +   R      ++   LS +    L         P
Sbjct: 118 MTLGADYVATGHYA--QIKRDENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMF----P 171

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ ++R+   Q  ++
Sbjct: 172 LGHLQKSEVRAIAEQAGLA 190


>gi|195979019|ref|YP_002124263.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|229487422|sp|B4U0P1|MNMA_STREM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|195975724|gb|ACG63250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 374

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 67/199 (33%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 6   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 57

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 58  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYA 117

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H    Q+   E   +   R      ++   LS +    L         P
Sbjct: 118 MTLGADYVATGHYA--QIKRDENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMF----P 171

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ ++R+   Q  ++
Sbjct: 172 LGHLQKSEVRAIAEQAGLA 190


>gi|269128442|ref|YP_003301812.1| GMP synthase large subunit [Thermomonospora curvata DSM 43183]
 gi|268313400|gb|ACY99774.1| GMP synthase, large subunit [Thermomonospora curvata DSM 43183]
          Length = 527

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 75/206 (36%), Gaps = 33/206 (16%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L+  E     +R+ V     +  +SGG DS     A+ + L  R+ G  + + + VDH 
Sbjct: 205 MLNIAEEAIEAIRAQVGGKRAICGLSGGVDS-----AVAAALVQRAIGS-RLTCVFVDHG 258

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALIS 111
            LR+   ++V    D  +   +   VV  +          + P+T      RE    +  
Sbjct: 259 LLRKGEAEQVE--KDFVAATGVQLHVVDAQERFLSALAGVTDPETKRKIIGREF-IRVFE 315

Query: 112 EHAKTINATLIMTAHT-FDDQLE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLN 162
           + A+      I+ AH+  DD +E     T+Y          G            +  DL 
Sbjct: 316 QAARE-----IVAAHSGEDDDVEFLVQGTLYPDVVESGGGTGAANIKSHHNVGGLPEDLK 370

Query: 163 LWISRPFLRCRREDIRSFLLQRNISW 188
             +  P     ++++R+   Q  +  
Sbjct: 371 FKLVEPLRTLFKDEVRALGEQLGLPP 396


>gi|315655759|ref|ZP_07908657.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
 gi|315489823|gb|EFU79450.1| exopolyphosphatase [Mobiluncus curtisii ATCC 51333]
          Length = 528

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + I VDH  LR   +++V 
Sbjct: 217 IRQRVGDAQVICGLSGGVDSSVAAALVHKAIGD------QLTCIFVDHGLLRAGEREQVE 270

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQT-----------GLMAAAREARYALIS 111
              D  + + I    V             S+P+               AA RE    +  
Sbjct: 271 --RDYAANMGIRVKSVDESARFLGALAGVSEPEQKRKIIGREFIRSFEAAQREV---VAE 325

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A       ++    + D +E+             +        +  DL   +  P  +
Sbjct: 326 IGASGGEVKFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLKFELIEPLRK 380

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R+   +  + 
Sbjct: 381 LFKDEVRALGRELGLP 396


>gi|261208073|ref|ZP_05922748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TC 6]
 gi|289565497|ref|ZP_06445945.1| tRNA methyl transferase [Enterococcus faecium D344SRF]
 gi|294615054|ref|ZP_06694941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1636]
 gi|294617680|ref|ZP_06697306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1679]
 gi|314938375|ref|ZP_07845666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a04]
 gi|314942298|ref|ZP_07849146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133C]
 gi|314951434|ref|ZP_07854484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133A]
 gi|314993154|ref|ZP_07858539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133B]
 gi|314996038|ref|ZP_07861116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a01]
 gi|260077657|gb|EEW65373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TC 6]
 gi|289162695|gb|EFD10547.1| tRNA methyl transferase [Enterococcus faecium D344SRF]
 gi|291592089|gb|EFF23711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1636]
 gi|291596054|gb|EFF27321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1679]
 gi|313589792|gb|EFR68637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a01]
 gi|313592331|gb|EFR71176.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133B]
 gi|313596391|gb|EFR75236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133A]
 gi|313598915|gb|EFR77760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133C]
 gi|313642273|gb|EFS06853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0133a04]
          Length = 373

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 63/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V +++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             + A  + T H    T D+      +R   +  ++   LS +    L         P  
Sbjct: 117 MDLGADYVATGHYAQVTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R+   +  ++
Sbjct: 173 GMEKSEVRAIAERAGLA 189


>gi|69244797|ref|ZP_00603021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium DO]
 gi|257879151|ref|ZP_05658804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,230,933]
 gi|257882042|ref|ZP_05661695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,502]
 gi|257883775|ref|ZP_05663428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,501]
 gi|257889981|ref|ZP_05669634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,410]
 gi|258615538|ref|ZP_05713308.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecium DO]
 gi|260560202|ref|ZP_05832379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium C68]
 gi|293553765|ref|ZP_06674382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1039]
 gi|293563497|ref|ZP_06677945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1162]
 gi|293569057|ref|ZP_06680369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1071]
 gi|293571269|ref|ZP_06682303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E980]
 gi|294622809|ref|ZP_06701763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium U0317]
 gi|314947767|ref|ZP_07851174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0082]
 gi|68196151|gb|EAN10581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium DO]
 gi|257813379|gb|EEV42137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,230,933]
 gi|257817700|gb|EEV45028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,502]
 gi|257819613|gb|EEV46761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,501]
 gi|257826341|gb|EEV52967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,410]
 gi|260073769|gb|EEW62094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium C68]
 gi|291588238|gb|EFF20074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1071]
 gi|291597767|gb|EFF28905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium U0317]
 gi|291602058|gb|EFF32293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1039]
 gi|291604499|gb|EFF33985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E1162]
 gi|291608676|gb|EFF37964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium E980]
 gi|313645747|gb|EFS10327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX0082]
          Length = 373

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 63/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V +++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             + A  + T H    T D+      +R   +  ++   LS +    L         P  
Sbjct: 117 MDLGADYVATGHYAQVTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R+   +  ++
Sbjct: 173 GMEKSEVRAIAERAGLA 189


>gi|323128291|gb|ADX25588.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 373

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVKRDEDGTVHMLRGADNGKDQTYFLSQLSQKQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KPEVRQIAERAGLA 189


>gi|251783539|ref|YP_002997844.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242392171|dbj|BAH82630.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 379

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 14  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 66  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P    +
Sbjct: 126 GADYVATGHYAQVKRDEDGTVHMLRGADNGKDQTYFLSQLSQKQLQKT----LFPLGHLQ 181

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 182 KPEVRQIAERAGLA 195


>gi|205821554|sp|A8F172|MNMA_RICM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 365

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           + I+VA+SGG DS  +   LH    +     ++      DH +         A  ++   
Sbjct: 9   STIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIYDA 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL----------MAAAREAR------YALISEHAKTI 117
             V ++L I H V+ +++   ++ +                 R      +  + + A+ +
Sbjct: 65  KMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTAREL 124

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L     T   +   ++  P    
Sbjct: 125 GADKLATGHYVRKINGDNGAE--LYTGLDPAKDQSYFLF----TTTKEQLEYLRFPLGGL 178

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            +++ R    +  +   + P + D  F
Sbjct: 179 TKDETRKLASKFGLEVADKPDSQDICF 205


>gi|157964381|ref|YP_001499205.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia massiliae MTU5]
 gi|157844157|gb|ABV84658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia massiliae MTU5]
          Length = 374

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           + I+VA+SGG DS  +   LH    +     ++      DH +         A  ++   
Sbjct: 18  STIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIYDA 73

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL----------MAAAREAR------YALISEHAKTI 117
             V ++L I H V+ +++   ++ +                 R      +  + + A+ +
Sbjct: 74  KMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTAREL 133

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L     T   +   ++  P    
Sbjct: 134 GADKLATGHYVRKINGDNGAE--LYTGLDPAKDQSYFLF----TTTKEQLEYLRFPLGGL 187

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            +++ R    +  +   + P + D  F
Sbjct: 188 TKDETRKLASKFGLEVADKPDSQDICF 214


>gi|313899439|ref|ZP_07832949.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
 gi|312955727|gb|EFR37385.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
          Length = 430

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 22/186 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   +        +   + V+H L R+   + V
Sbjct: 128 LIREQVKDRKVLLALSGGVDSSVVAALLLKAIGK------QLYCVHVNHGLMRKGESESV 181

Query: 71  RYV-SDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
             V  +      + +   S +        ++P+        E       E  K      +
Sbjct: 182 IEVFKNQMDA-NLIYVDASERFLGKLKDVAEPEQKRKIIGAEFIRVFEEEARKLKGIDFL 240

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            K +        +  DL   +  P  +  ++++R+  L
Sbjct: 241 AQGTIYPDIVE------SGTKTAKVVKSHHNVGGLPDDLAFELVEPLRQLFKDEVRACGL 294

Query: 183 QRNISW 188
           +  +  
Sbjct: 295 ELGLPH 300


>gi|15964067|ref|NP_384420.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sinorhizobium meliloti 1021]
 gi|307301211|ref|ZP_07580973.1| GMP synthase, large subunit [Sinorhizobium meliloti BL225C]
 gi|307321113|ref|ZP_07600518.1| GMP synthase, large subunit [Sinorhizobium meliloti AK83]
 gi|24211760|sp|Q92SQ3|GUAA_RHIME RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|15073243|emb|CAC41751.1| Probable GMP synthase glutamine-hydrolyzing protein [Sinorhizobium
           meliloti 1021]
 gi|306893285|gb|EFN24066.1| GMP synthase, large subunit [Sinorhizobium meliloti AK83]
 gi|306903667|gb|EFN34254.1| GMP synthase, large subunit [Sinorhizobium meliloti BL225C]
          Length = 520

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE 
Sbjct: 215 AIRKQVGDKKVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEA 265

Query: 71  RYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINAT 120
             V  +      L + H   S +        S P+T      R        E  K   A 
Sbjct: 266 ANVVAMFKEHYNLHLLHIDASDRFIGELEGVSDPETKRKIIGRLFIEVFEEEAKKLGGAD 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   +N+ +  P     ++++R  
Sbjct: 326 FLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRVL 382

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 383 GRELGLP 389


>gi|226946013|ref|YP_002801086.1| GMP synthase [Azotobacter vinelandii DJ]
 gi|226720940|gb|ACO80111.1| GMP synthase [Azotobacter vinelandii DJ]
          Length = 526

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 41/196 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---- 65
           VR+ V  A++L+ +SGG DS  +   LH  + DR       + + VD+    L E     
Sbjct: 222 VRAQVGGANVLLGLSGGVDSSVVAALLHRAIGDR------LTCVFVDNGLLRLHEGDQVM 275

Query: 66  -------------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
                        A  E ++++++               S P+       R       +E
Sbjct: 276 AMFAENMGVKVIRADAEAQFLANLAG------------VSDPEQKRKIIGRTFIEVFDAE 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK  N   +     + D +E+      R      +        +  D+NL +  P    
Sbjct: 324 AAKLENIRFLAQGTIYPDVIES---AGARTGKAHVIKSHHNVGGLPEDMNLKLVEPLREL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 381 FKDEVRKIGLELGLPY 396


>gi|83645146|ref|YP_433581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hahella chejuensis KCTC 2396]
 gi|123533626|sp|Q2SJL8|MNMA_HAHCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83633189|gb|ABC29156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hahella chejuensis KCTC 2396]
          Length = 364

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 42/194 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L ++  +     +K           E        A  ++   
Sbjct: 8   RVIVGISGGVDSSVSAYLLKALGYEVEGLFMK--------NWDEDDGTEYCTALSDLEDA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
             VC +L I     S+                R  R             +    ++A+ +
Sbjct: 60  QKVCDKLGIKLHTASFSAEYWDRVFEHFLDEYRAGRTPNPDILCNKEIKFKAFLDYAQAL 119

Query: 118 NATLIMTAHTFDDQL----E-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
              LI T H    Q     E T  M+      E+   L  +    L         P    
Sbjct: 120 GGDLIATGHYA--QFSRFGEHTYLMKGADPSKEQSYFLHAVPGQALART----LFPVGGL 173

Query: 173 RREDIRSFLLQRNI 186
            ++++R    + ++
Sbjct: 174 LKKEVRRIARELDL 187


>gi|326391356|ref|ZP_08212895.1| Queuosine synthesis-like protein [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992619|gb|EGD51072.1| Queuosine synthesis-like protein [Thermoanaerobacter ethanolicus JW
           200]
          Length = 266

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 37/177 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  L    + VL +R       S +         +  E++   ++  ++ +
Sbjct: 12  LIAFSGGVDSTFLAKVSYDVLGNRVLAVTATSPMH------PKS--ELKEAVELAKKIGL 63

Query: 83  AHSVVSWKN-------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            H VV + +        K         +   ++     A+      I+     DD     
Sbjct: 64  PHLVVEFNDILEIEEFKKNPLNRCYICKSNLFSRFKAIAEEKGFKYILEGTNADD----- 118

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNIS-WC 189
                         +S           L I  P L    ++E+IR    +  +  W 
Sbjct: 119 --------------VSDFRPGRRALKELGILSPLLECGIKKEEIRILSKEMGLPTWW 161


>gi|320538125|ref|ZP_08038020.1| GMP synthase protein [Treponema phagedenis F0421]
 gi|320144942|gb|EFW36663.1| GMP synthase protein [Treponema phagedenis F0421]
          Length = 529

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 48/197 (24%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           V+  V    +L+A+SGG DS  L   L+  + +        + I +DH L R+   DEV 
Sbjct: 228 VQKTVGSGKVLLALSGGVDSSVLAALLNKAVGE------NLTCIFIDHGLMRKNEGDEVE 281

Query: 72  YVSDVCSR-------------LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
             +   +              L      VS    K +       R     +  E AK I 
Sbjct: 282 --AAFANSEMNFIRINAQSRFLG-KLKGVSEPEKKRKIIGEEFIR-----VFEEEAKKIG 333

Query: 119 A-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS-------GMCDTILYDLNLWISRPFL 170
               +     + D +E             G  +        G+   I +     +  PF 
Sbjct: 334 IVDFLAQGTIYADVVE---------SGANGSAVIKSHHNVGGLPKNISFKS---LIEPFR 381

Query: 171 RCRREDIRSFLLQRNIS 187
              +++IR   L+  + 
Sbjct: 382 TLFKDEIRRLGLELGLP 398


>gi|220921297|ref|YP_002496598.1| GMP synthase [Methylobacterium nodulans ORS 2060]
 gi|219945903|gb|ACL56295.1| GMP synthase, large subunit [Methylobacterium nodulans ORS 2060]
          Length = 518

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L  +SGG DS    + +H  + +      + + + VDH  LR    +EV 
Sbjct: 214 IRAQVGTGKVLCGLSGGVDSAVAAVLIHEAIGE------QLTCVFVDHGLLRLGEAEEV- 266

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V  ++         + P+       R       +E  K   A  +
Sbjct: 267 -VRLFRDHYNIPLVHVQAQDLFLGALAGVTDPEVKRKTIGRLFIDVFEAEAKKIGGAAFL 325

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 326 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRVLGR 382

Query: 183 QRNIS 187
           +  + 
Sbjct: 383 ELGLP 387


>gi|146342725|ref|YP_001207773.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. ORS278]
 gi|205811327|sp|A4Z082|MNMA_BRASO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146195531|emb|CAL79558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bradyrhizobium sp. ORS278]
          Length = 397

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 26/136 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L S   D     ++      DH     R+    A
Sbjct: 7   LEGRPEDTRVVVAMSGGVDSSVTAALLKSQGYDVVGITLQLY----DHGAATHRKGACCA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++    +V  RL I H V+ +++   ++ +   A                R  ++  +
Sbjct: 63  GQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGDL 122

Query: 111 SEHAKTINATLIMTAH 126
            + A+ + A+++ T H
Sbjct: 123 LKTARELGASVLATGH 138


>gi|323486209|ref|ZP_08091537.1| hypothetical protein HMPREF9474_03288 [Clostridium symbiosum
           WAL-14163]
 gi|323400427|gb|EGA92797.1| hypothetical protein HMPREF9474_03288 [Clostridium symbiosum
           WAL-14163]
          Length = 275

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 81/275 (29%), Gaps = 60/275 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              + +A SGG DS  LL        +    K    A++ +  L      +      V  
Sbjct: 22  KGPVCIAFSGGVDSSLLLKIACD---NGRKYKTPVYAVTFNTMLHPACDLDTA--KKVAR 76

Query: 79  RLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L   H V+     + +             ++  +  + + A+    T I+     DD  
Sbjct: 77  ELGAEHVVIQVDELEMEGMRDNPPERCYLCKKHLFTALLDFAREKGITCILDGTNEDD-- 134

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP--FLRCRREDIRSFLLQRNISWCE 190
            T   R          G+  + +       L I  P       +  ++       IS   
Sbjct: 135 -THVYR---------PGIRALKE-------LGIISPLALCHITKRQVKELSSAFGISVAS 177

Query: 191 DPS------------NTD----------DRFER------VRVRRFVRDIDLHALYLKMKK 222
            PS              D          + + R      VR+R     + L     +M  
Sbjct: 178 RPSTPCMATRLPYGTKLDYEILRKIEKGEAYLRTVFEGNVRLRLHQDTVRLELDPAQMAA 237

Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDIL 257
             + R ++ + +  L   Y+T+ +    + S D+ 
Sbjct: 238 ALEKREEICSVLKKLGFSYITLDLEGFRSGSMDLF 272


>gi|192361469|ref|YP_001982951.1| tRNA-specific 2-thiouridylase MnmA [Cellvibrio japonicus Ueda107]
 gi|190687634|gb|ACE85312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cellvibrio japonicus Ueda107]
          Length = 378

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 38/195 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
             A ++V +SGG DS    + L           +K           E        AK ++
Sbjct: 17  PGAKVIVGMSGGVDSSVSALLLQQQGYAVEGLFMK--------NWDEDDGTEYCTAKADL 68

Query: 71  RYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHA 114
                VC +L I     +     W N          A           RE ++ +  E+A
Sbjct: 69  ADAQRVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKVFMEYA 128

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + +   LI T H     D    T+ ++      ++   L  +     +  +L+   P   
Sbjct: 129 QMLGGELIATGHYVRRADRNGHTLLLKGLDPNKDQSYFLHAV-GEAEFAKSLF---PVGE 184

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 185 LEKPEVRRIAEEHGL 199


>gi|329957022|ref|ZP_08297590.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
 gi|328523779|gb|EGF50871.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
          Length = 435

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 26/188 (13%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+A+SGG DS  +   L   + D          + V+H L R+    E 
Sbjct: 133 LIRRQVGDRKVLLALSGGVDSSVVAALLLKAIGD------NLVCVHVNHGLMRKG---ES 183

Query: 71  RYVSDVCS-RLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINAT 120
             V ++   +L      V   +         + P+        E       E  K     
Sbjct: 184 EAVIEIFKNKLNANLVYVDATDRFLDKLAGVADPEQKRKIIGGEFIRVFEEEARKLDGID 243

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E            K +        +  DL   +  P  +  ++++R+ 
Sbjct: 244 FLGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLRQLFKDEVRAC 297

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 298 GLELGLPY 305


>gi|114768812|ref|ZP_01446438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HTCC2255]
 gi|114549729|gb|EAU52610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HTCC2255]
          Length = 382

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 32/211 (15%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                +LVA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 21  PKDTRVLVAMSGGVDSSVVAAMLSEEGYDVVGVTLQLY----DHG--AALAKKGACCAGR 74

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           +++    V   +   H V+ ++N   ++ +   A                   ++  + E
Sbjct: 75  DIQDARRVAEEMGFPHYVLDYENKFKESVIDEFADAYLAGATPVPCIRCNERVKFRDLLE 134

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK ++A  + T H     +E       +   +       +  T    L+ ++  P    
Sbjct: 135 TAKDLDADCMATGHYIQRFVENGKAELHKAADQDRDQSYFLFSTKQEQLD-YLRFPLGHL 193

Query: 173 -RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
             ++D R    +  +   + P + D  F   
Sbjct: 194 KSKKDTRELAHKYGLPVADKPDSQDICFVPN 224


>gi|325979485|ref|YP_004289201.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325179413|emb|CBZ49457.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 373

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 68/197 (34%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L      +  P  
Sbjct: 117 MTLGADYVATGHYAQVSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQK----VMFPLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRKIAERAGLA 189


>gi|306832460|ref|ZP_07465612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425360|gb|EFM28480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 393

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 68/197 (34%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 25  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 76

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 77  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 136

Query: 115 KTINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L      +  P  
Sbjct: 137 MTLGADYVATGHYAQVSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQK----VMFPLG 192

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 193 HLEKPEVRKIAERAGLA 209


>gi|288906423|ref|YP_003431645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus UCN34]
 gi|288733149|emb|CBI14730.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gallolyticus UCN34]
          Length = 373

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 68/197 (34%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L      +  P  
Sbjct: 117 MTLGADYVATGHYAQVSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQK----VMFPLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRKIAERAGLA 189


>gi|257897740|ref|ZP_05677393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com15]
 gi|257835652|gb|EEV60726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com15]
          Length = 373

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++            A  R  R             +    ++A  +
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D+      +R   +  ++   LS +    L         P     
Sbjct: 120 GADYVATGHYAQVTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMF----PLGGME 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 176 KSEVRAIAERAGLA 189


>gi|227552294|ref|ZP_03982343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX1330]
 gi|257895129|ref|ZP_05674782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com12]
 gi|293377883|ref|ZP_06624064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium PC4.1]
 gi|227178565|gb|EEI59537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium TX1330]
 gi|257831694|gb|EEV58115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium Com12]
 gi|292643430|gb|EFF61559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium PC4.1]
          Length = 373

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++            A  R  R             +    ++A  +
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D+      +R   +  ++   LS +    L         P     
Sbjct: 120 GADYVATGHYAQVTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMF----PLGGME 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 176 KSEVRAIAERAGLA 189


>gi|257892743|ref|ZP_05672396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,408]
 gi|257829122|gb|EEV55729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,231,408]
          Length = 373

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++            A  R  R             +    ++A  +
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D+      +R   +  ++   LS +    L         P     
Sbjct: 120 GADYVATGHYAQVTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMF----PLGGME 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 176 KSEVRAIAERAGLA 189


>gi|193215134|ref|YP_001996333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088611|gb|ACF13886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 365

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 51/222 (22%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCL---RETAKD----- 68
              ++V +SGG DS      L            +   +++     L      +++     
Sbjct: 2   KKKVIVGMSGGVDSSVAACLLAE-------EGFEVIGVTLHTWEKLPKTNNDSEEQNALS 54

Query: 69  ---EVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAR----------EARYAL 109
              E      + +     H  + ++ +  +             R          + ++  
Sbjct: 55  PTHEHEEAKQIAAAKGFLHFTIDFREAFQREVIDYFKSEYLLGRTPNPCVICNTKIKWQA 114

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-- 167
           + + AK   A  I T H        V  +  R    +G   S     +L+ L+  I    
Sbjct: 115 LLQEAKRHGAAYIATGHYAR-----VAKQEGRFRLLQGCDASKDQSYVLWGLSQEILEKA 169

Query: 168 --PFLRCRREDIRSFLLQRNISWCE-DPSNT-----DDRFER 201
             P     ++++R+   + ++   E D S       D+ +ER
Sbjct: 170 RFPLADYTKDEVRALARKYDLPVAEKDESQEICFIPDNNYER 211


>gi|87198574|ref|YP_495831.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134255|gb|ABD24997.1| GMP synthase (glutamine-hydrolyzing) [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 540

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V  + ++  +SGG DS    + +H  + D      + + + VDH L R     E  
Sbjct: 236 IREQVGDSRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRMG---EAE 286

Query: 72  YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V  +      I                     EA+   I         +E  +   A  
Sbjct: 287 QVVSLFRNHYNIPLVHKDVSALFLGGLAGVTDPEAKRKFIGKTFIDVFEAEARQVGGADF 346

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R+  
Sbjct: 347 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRALG 403

Query: 182 LQRNIS 187
            +  + 
Sbjct: 404 RELGLP 409


>gi|229586563|ref|YP_002845064.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia africae ESF-5]
 gi|259495837|sp|C3PN11|MNMA_RICAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|228021613|gb|ACP53321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia africae ESF-5]
          Length = 365

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           + I+VA+SGG DS  +   LH    +     ++      DH +         A  ++   
Sbjct: 9   STIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIYDA 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAKTI 117
             V ++L I H V+ +++   ++ +                    +  ++  + + A+ +
Sbjct: 65  KMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTAREL 124

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L     T   +   ++  P    
Sbjct: 125 GADKLATGHYVRKINGDNGAE--LHTGLDPAKDQSYFLF----TTTKEQLEYLRFPLGGL 178

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            +++ R    +  +   + P + D  F
Sbjct: 179 TKDETRKLASKFGLEVADKPDSQDICF 205


>gi|15669318|ref|NP_248123.1| GMP synthase subunit B [Methanocaldococcus jannaschii DSM 2661]
 gi|13626885|sp|Q58531|GUAAB_METJA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|1592321|gb|AAB99133.1| GMP synthase (guaA) [Methanocaldococcus jannaschii DSM 2661]
          Length = 310

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 30/198 (15%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     I+     ++  +     ++A+SGG DS    +  H  + D      K +A+ V
Sbjct: 1   MFDPKKFIDEAVEEIKQQISDRKAIIALSGGVDSSVAAVLTHKAIGD------KLTAVFV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAR---EARYAL 109
           D  L R+  ++EV        +L +   VV  K+      K  T      +   +    +
Sbjct: 55  DTGLMRKGEREEVE--KTFRDKLGLNLIVVDAKDRFLNALKGVTDPEEKRKIIGKLFIDV 112

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E A+ I A +++      D +ET           +G   S     + + + L +  P 
Sbjct: 113 FEEIAEDIKAEVLVQGTIAPDWIET-----------QGKIKSHHNVALPHGMVLEVVEPL 161

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 162 RELYKDEVRLLAKELGLP 179


>gi|257886541|ref|ZP_05666194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,141,733]
 gi|257822595|gb|EEV49527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecium 1,141,733]
          Length = 373

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 62/193 (32%), Gaps = 39/193 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++            A  R  R             +    ++A  +
Sbjct: 60  AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D+      +R   +  ++   LS +    L         P     
Sbjct: 120 GADYVATGHYAQVTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMF----PLGGME 175

Query: 174 REDIRSFLLQRNI 186
           + ++R+   +  +
Sbjct: 176 KSEVRAIAERAGL 188


>gi|57169043|ref|ZP_00368171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli RM2228]
 gi|57019588|gb|EAL56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli RM2228]
          Length = 338

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L ++  +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKL------HGKPNYHEENIKKVEKVANFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK++    + T
Sbjct: 56  QIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    +LE       R   ++    S    +   +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RLEN---NLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA 167


>gi|328544048|ref|YP_004304157.1| GMP synthase-glutamine amidotransferase protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413792|gb|ADZ70855.1| GMP synthase-glutamine amidotransferase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 515

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + I VDH L R+    E +
Sbjct: 211 IRAQVGSGRVICGLSGGVDSSVAAVLIHEAIGD------QLTCIFVDHGLMRKG---EAK 261

Query: 72  YVSDVCS-RLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      I    V   +         S P+       R       +E  K   A  
Sbjct: 262 EVVSLFRGHYNIPLVHVDAADTFIDALEGESDPEVKRKTIGRLFIEVFEAEATKLGGADF 321

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + + +  P     ++++R+  
Sbjct: 322 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMKLVEPLRELFKDEVRALG 378

Query: 182 LQRNIS 187
            +  + 
Sbjct: 379 RELGLP 384


>gi|312870558|ref|ZP_07730675.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus oris PB013-T2-3]
 gi|311093918|gb|EFQ52245.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus oris PB013-T2-3]
          Length = 517

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  + D      + + I VDH  LR+    E  
Sbjct: 216 IRKEVGDKKVILGLSGGVDSSVTAVLIHKAIDD------QLTCIFVDHGLLRKN---EAD 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NA 119
            V   +   L +  ++V    +    G +A      + R         + +E AK I +A
Sbjct: 267 QVMKALNKDLGV--NIVKVDAADRFLGKLAGVTDPEQKRKIIGKEFIEVFNEEAKKIPDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +   L   +  P  +  +++ R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRKLFKDETRE 378

Query: 180 FLLQRNISW 188
              +  I  
Sbjct: 379 LGEKLGIPH 387


>gi|325686453|gb|EGD28482.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK72]
          Length = 373

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H      DQ     +   R      ++   LS +    L         P
Sbjct: 117 LTLGADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKPEVRAIAERAGLA 189


>gi|324989555|gb|EGC21501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK353]
          Length = 373

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H      DQ     +   R      ++   LS +    L         P
Sbjct: 117 LTLGADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKPEVRAIAERAGLA 189


>gi|297183152|gb|ADI19294.1| GMP synthase, pp-ATPase domain/subunit [uncultured SAR406 cluster
           bacterium HF0500_01L02]
          Length = 516

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +LV VSGG DS  +   +H  + +RS      +A+ +DH L R+    E +
Sbjct: 212 IRDQVGDGKVLVGVSGGVDSTVVAALMHRAIGERS------TAVLIDHGLMRKN---EAK 262

Query: 72  YVSDVCS---RLRIAHSVVS-------WKNSKPQTGLMAAAREARYALISEHAKTINATL 121
                     ++ I     S          + P+        +  Y+      +      
Sbjct: 263 NCVSALKDGLKVNIHCYDESNIFLSKLSDITDPEEKRKIIGNQFIYSFDRISGELGEMQF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +  +   +        +  ++   +  P     ++++R+  
Sbjct: 323 LAQGTLYPDVIES---GVSKGKSAHMIKSHHNVGGLPKNMTFELVEPLRELFKDEVRNVG 379

Query: 182 LQRNIS 187
            +  + 
Sbjct: 380 RELGLP 385


>gi|262281666|ref|ZP_06059435.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA]
 gi|262262120|gb|EEY80817.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA]
          Length = 373

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H      DQ     +   R      ++   LS +    L         P
Sbjct: 117 LTLGADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKPEVRAIAERAGLA 189


>gi|110679988|ref|YP_682995.1| GMP synthase [Roseobacter denitrificans OCh 114]
 gi|123172371|sp|Q165N4|GUAA_ROSDO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|109456104|gb|ABG32309.1| GMP synthase putative [Roseobacter denitrificans OCh 114]
          Length = 522

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + + VDH L R+   +  +
Sbjct: 218 IREQVGSGRVICALSGGVDSSVAAVLIHEAIGD------QLTCVYVDHGLMRK--DESAQ 269

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
            V        +          +             R+    L  E  +        A  +
Sbjct: 270 VVGMFREHYNLPLIHADESDLFLGKLEGVSDPETKRKIIGGLFIEVFEKYAKEIGGADFL 329

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R+   
Sbjct: 330 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRALGH 386

Query: 183 QRNIS 187
           +  + 
Sbjct: 387 ELGLP 391


>gi|260799001|ref|XP_002594488.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae]
 gi|229279722|gb|EEN50499.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae]
          Length = 383

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 41/197 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAK-DEVR 71
            H++VA+SGG DS    + L            R++  + +          +     ++  
Sbjct: 4   RHVVVALSGGVDSSVAALLLKRKGYQVTGVFMRNWDTVNELGVC------QADRDCEDAE 57

Query: 72  YVSDVCSRLRIAHS-----------VVSWKNSKPQTG-------LMAAAREARYALISEH 113
           YV   C RL I              V S    + Q G       L     + R    +  
Sbjct: 58  YV---CRRLDIPFHQVNLVKDYWNDVFSEMLKEYQHGWTPNPDILCNKRIKFR-TFFNYV 113

Query: 114 AKTINATLIMTAHTFDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                A  + T H     +  V  +++   + ++   LS +    L         P    
Sbjct: 114 MDKFEADALATGHYARTSIHDVKLLQALDSWKDQTFFLSQIPQQALRRA----LFPLGEL 169

Query: 173 RREDIRSFLLQRNISWC 189
            +  ++        +  
Sbjct: 170 TKPVVKQMAQDAGFTHI 186


>gi|169831787|ref|YP_001717769.1| GMP synthase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638631|gb|ACA60137.1| GMP synthase, large subunit [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 513

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 28/196 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS      +H  + DR       + + VDH  L
Sbjct: 203 SFLEDAVAQIRREVGDGRVLCALSGGVDSSVAAALVHRAVGDR------LTCVFVDHGLL 256

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR-------YALISEH 113
           R+   ++VR       R  +    V  ++       G+     + R            E 
Sbjct: 257 RQGESEQVR--ETFARRFGMRLVHVEAQDRFLDRLAGVEDPEAKRRIIGTEFIRVFEEEA 314

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLR 171
           AK      ++          T+Y          G  +        +  D+   +  P   
Sbjct: 315 AKLGPIDFLVQG--------TIYPDVVESGTATGAVIKTHHNVGGLPEDIRFKLIEPLRW 366

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +  + 
Sbjct: 367 LFKDEVRVLGEELGLP 382


>gi|260881375|ref|ZP_05404238.2| PP-loop family protein [Mitsuokella multacida DSM 20544]
 gi|260849228|gb|EEX69235.1| PP-loop family protein [Mitsuokella multacida DSM 20544]
          Length = 294

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 63/199 (31%), Gaps = 46/199 (23%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++  ++ L     + VA S G DS  L+   H VL D++   + F+A          +
Sbjct: 25  EKLQSILQQL---GSVAVAFSSGVDSTFLVKVAHDVLGDKA---VAFTAA---------S 69

Query: 67  K----DEVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREARYALISE---HAKT 116
                 +V      C++  I H  V +        +          ++AL +     A  
Sbjct: 70  DFVPQRDVDDAKAFCAKEGIEHHTVPFPILTVPHVEENPEDRCYFCKHALFAHMKELAAE 129

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRR 174
                ++     DD              +   G   + +       L I  P      R+
Sbjct: 130 RGLAAVVDGSNLDD------------DGDYRPGHKALKE-------LAIVSPLHEAGMRK 170

Query: 175 EDIRSFLLQRNISWCEDPS 193
            DIR+      +   + PS
Sbjct: 171 ADIRALSKALGLPTWDKPS 189


>gi|153010381|ref|YP_001371595.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ochrobactrum anthropi ATCC 49188]
 gi|151562269|gb|ABS15766.1| GMP synthase, large subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 523

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++ A+SGG DS    +  H  + D      + + I VDH L R+ 
Sbjct: 213 EQAVEAIRKQVGSGKVICALSGGVDSSVAALLAHEAIGD------QLTCILVDHGLMRKN 266

Query: 66  AKDEVRYVSDVCSRL-RIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAK 115
              E   V ++      +   +V   +           P+       R        E  K
Sbjct: 267 ---EANQVVEMFREHYNLPLILVDAADRFIGELEGETDPEKKRKTIGRLFIEVFEEEAKK 323

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E+V   S        +        +   + + +  P     ++
Sbjct: 324 LGGADFLVQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKD 380

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 381 EVRLLGKELGLP 392


>gi|58336584|ref|YP_193169.1| GMP synthase [Lactobacillus acidophilus NCFM]
 gi|227903135|ref|ZP_04020940.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus acidophilus ATCC 4796]
 gi|75358092|sp|Q5FMD6|GUAA_LACAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|58253901|gb|AAV42138.1| GMP synthase [Lactobacillus acidophilus NCFM]
 gi|227869121|gb|EEJ76542.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus acidophilus ATCC 4796]
          Length = 516

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 215 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 269 --KALNKDLGVNIIRVNAQERFLNKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVDFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+N  +  P  +  ++++R    
Sbjct: 327 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPEDMNFKLIEPLRKLFKDEVRELGE 380

Query: 183 QRNISW 188
           +  I  
Sbjct: 381 KLGIPH 386


>gi|283457610|ref|YP_003362194.1| GMP synthase [Rothia mucilaginosa DY-18]
 gi|283133609|dbj|BAI64374.1| GMP synthase [Rothia mucilaginosa DY-18]
          Length = 530

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS      +H  + D      + +   +DH  LRE  +++V 
Sbjct: 219 IREQVGSDRVICALSGGVDSSVAAALVHKAVGD------QLTCFFIDHGLLREGEREQVE 272

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL------ISEHAKT 116
              D  + + I    +             ++P+    A  RE   +       +   A  
Sbjct: 273 --QDYAASMGIKVITIDESERFLSALEGVTEPEAKRKAIGREFIRSFEEAQRKLIAEAGE 330

Query: 117 INAT--LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             A    ++    + D +E+             +        +  DL   +  P     +
Sbjct: 331 EGADIKFLVQGTLYPDVVES-----GGGDGTANIKSHHNVGGLPDDLTFELVEPLRTLFK 385

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 386 DEVRAIGRELGVP 398


>gi|295402096|ref|ZP_06812056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975878|gb|EFG51496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 370

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 36/194 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS      L     D      +++       +        TA ++  
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDDTNDDGVC-------TATEDYE 54

Query: 72  YVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAK 115
            V  V ++L I +  V+++     +  T  M   +  R             +    ++A 
Sbjct: 55  DVKRVANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYAL 114

Query: 116 TINATLIMTAHTFDDQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           +++A  I T H    + E      +R +    ++   LS + +  L      +  P    
Sbjct: 115 SLDADYIATGHYARIRRENGQVTLLRGKDLNKDQTYFLSQLTEKHLAK----VLFPLGEL 170

Query: 173 RREDIRSFLLQRNI 186
            ++++R    + N+
Sbjct: 171 TKDEVRKIAKELNL 184


>gi|312109803|ref|YP_003988119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
 gi|311214904|gb|ADP73508.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
          Length = 370

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 36/194 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS      L     D      +++       +        TA ++  
Sbjct: 2   KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDDTNDDGVC-------TATEDYE 54

Query: 72  YVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAK 115
            V  V ++L I +  V+++     +  T  M   +  R             +    ++A 
Sbjct: 55  DVKRVANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYAL 114

Query: 116 TINATLIMTAHTFDDQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           +++A  I T H    + E      +R +    ++   LS + +  L      +  P    
Sbjct: 115 SLDADYIATGHYARIRRENGQVTLLRGKDLNKDQTYFLSQLTEKHLAK----VLFPLGEL 170

Query: 173 RREDIRSFLLQRNI 186
            ++++R    + N+
Sbjct: 171 TKDEVRKIAKELNL 184


>gi|331090911|ref|ZP_08339754.1| hypothetical protein HMPREF9477_00397 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405465|gb|EGG84998.1| hypothetical protein HMPREF9477_00397 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 275

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 82/279 (29%), Gaps = 62/279 (22%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           + +    I++A SGG DS  LL       S +++G     AI+V   L      +V   +
Sbjct: 16  NSLAKEDIVLAFSGGVDSSLLLKICCD--SSKNYGT-TVYAITVHTELHPM--KDVEIAT 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------ISEHAKTINATLIMTAHT 127
            V       H VV     +   G+     +  Y         + E AK +    ++    
Sbjct: 71  KVAKEAGAKHLVVYIDELQ-DAGIEYNPIDRCYRCKSLLFGKLKEKAKELGVKNVVEGTN 129

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRN 185
            DD                   L      I     L I  P       + ++R    +  
Sbjct: 130 EDD-------------------LHVYRPGIRALRELNIISPLAESGFTKAEVRKLAAEYG 170

Query: 186 ISWCEDPS----------NTDDRFER------------------VRVRRFVRDIDLHALY 217
           IS    PS               +ER                  VR+R       +    
Sbjct: 171 ISVANRPSTPCMATRFPYGAKLDYERMHQVEEGEEWLKTLGFYNVRIRVHGEIARIEVDE 230

Query: 218 LKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
             M    + RVKV   +      Y+TV +    + S DI
Sbjct: 231 KDMPLLLNNRVKVIEKLKAFGYDYVTVDLEGFRSGSMDI 269


>gi|15966466|ref|NP_386819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti 1021]
 gi|24638324|sp|Q92MB5|MNMA_RHIME RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|15075737|emb|CAC47292.1| Putative tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Sinorhizobium meliloti 1021]
          Length = 398

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  + I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+     +  G   +      + +            
Sbjct: 126 KELGADALATGH---------YIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R+   +  +
Sbjct: 177 IDYLRFPLGGLPKSETRALAEEMGL 201


>gi|296133414|ref|YP_003640661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermincola sp. JR]
 gi|296031992|gb|ADG82760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermincola potens JR]
          Length = 358

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 112/368 (30%), Gaps = 77/368 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVL---------------SDRSFGKIKFSAISVDHCL 62
             + ++VA+SGG DS  L  AL                        G    +A+      
Sbjct: 2   PKSKVVVAMSGGVDS-SLAAALLQEQGYDVIGVTMQIWPAEEQAEGGCCSLAAV------ 54

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REAR 106
                ++ R V+D    L I + V+++++   +T +                    R+ +
Sbjct: 55  -----EDARRVADT---LGIPYYVMNFRDLFRKTVIADFCAEYMAGRTPNPCIVCNRKVK 106

Query: 107 YALISEHAKTINATLIMTAHTF----DDQLETVYMR--SQRDYAEKGMGLSGMCDTILYD 160
           +  + + A  + A  I T H      D+      MR    R   +    L  +    L  
Sbjct: 107 FEALLQKALALGAEYIATGHYARLSYDEARRRYLMRRALDRGKDQT-YALYNLTQYQLKH 165

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF-ERVRVRRFVRDIDLHALYLK 219
             +    P     + + R    +  +     P + +  F      RRF+ +     +   
Sbjct: 166 TLM----PLGNYTKAEAREMAAKLGLRVANKPDSQEICFVTDNNYRRFLEENVDQEIKPG 221

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI--SQDILNIDSTLLFYLL--------R 269
              F DL   V      +    +       IA+     +++ID      +L        R
Sbjct: 222 P--FLDLEGNVLGRHEGIPFYTIGQRKGLGIALGKPMYVVDIDPERNAVILGSNEDVFAR 279

Query: 270 VSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLI 329
              +     I +P  +    V + ++   +      + +I    + + +       P   
Sbjct: 280 GLISTDNNFIYIPELKDPMEVEVKIRYSAQP----AKAIIYPHDDGVRVEFE---KPQRA 332

Query: 330 LYPEETTV 337
           + P +  V
Sbjct: 333 VTPGQAAV 340


>gi|66522082|ref|XP_393336.2| PREDICTED: GMP synthase [glutamine-hydrolyzing] [Apis mellifera]
          Length = 718

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           F+R  V    +L+ VSGG DS      LH  L+     K +  A+ +++   R+    E 
Sbjct: 233 FIRDTVGNKKVLLLVSGGVDSTVCAALLHKALN-----KEQVIALHINNGFMRKG---ET 284

Query: 71  RYVSDVCSRLRIAHSVVS 88
           ++V    ++L I   VV+
Sbjct: 285 QFVEQSLAQLGIRLRVVN 302


>gi|15887630|ref|NP_353311.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Agrobacterium tumefaciens str. C58]
 gi|21759162|sp|Q8UIL2|GUAA_AGRT5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|15155177|gb|AAK86096.1| GMP synthase [Agrobacterium tumefaciens str. C58]
          Length = 525

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R-ETAKDEV 70
           +R  V    +L A+SGG DS    I +H  + D      + + + VDH L R   ++  V
Sbjct: 216 IREQVGTGRVLCALSGGVDSSVAAILIHEAIGD------QLTCVYVDHGLMRLGESEQVV 269

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAR----EARYALISEHAKTI 117
               D      I    V   +         S P+       R              A   
Sbjct: 270 GMFRD---HYNIPLVHVDAADLFLGELSGVSDPEVKRKTIGRLFIEVFEAEAAKIAADGK 326

Query: 118 NATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            A   +   T   D +E+V   S        +        +   +N+ +  P     +++
Sbjct: 327 GAPKFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDE 383

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 384 VRALGRELGLP 394


>gi|326800569|ref|YP_004318388.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21]
 gi|326551333|gb|ADZ79718.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21]
          Length = 362

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 76/240 (31%), Gaps = 60/240 (25%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ILVA+SGG DS    + LH    ++ +  I  +  + D+     +  E      
Sbjct: 1   MSKHGRILVAMSGGVDSSVAAVMLH----EQGYEVIGLTMKTWDYASSGGSTKETGCCSL 56

Query: 74  ------SDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAR----------EARYALIS 111
                   +       H ++  ++               A R            ++  + 
Sbjct: 57  DSINDARALAVGYGFPHYILDIRDEFGDFVINNFVDEYLAGRTPNPCVLCNTHIKWEALL 116

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQ---RDYAEKGMGLSGMCDTILYDLNLW-ISR 167
           + A  ++   I T H  +       +R Q   R    KG         +L+ ++   ++R
Sbjct: 117 KRADKLDCEFIATGHYAN-------IRLQDSGRYVISKGRDEHKDQSYVLWGVSQKNLAR 169

Query: 168 ---PFLRCRREDIRSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDID 212
              P     + +IR   L+              I +  D     + + R  +R  V DID
Sbjct: 170 TKFPLGSFTKAEIRQMALEMGQVELANKSESYEICFVPD-----NDY-RSFLRHRVEDID 223


>gi|150388741|ref|YP_001318790.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Alkaliphilus metalliredigens QYMF]
 gi|259647754|sp|A6TLR3|GUAA_ALKMQ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149948603|gb|ABR47131.1| GMP synthase, large subunit [Alkaliphilus metalliredigens QYMF]
          Length = 510

 Score = 56.8 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R+LV    +L A+SGG DS    + +H  + D        + + VDH  LR+
Sbjct: 202 IEKEIEAIRNLVGDRKVLCALSGGVDSSVAAVLVHQAIGD------NLTCVFVDHGLLRK 255

Query: 65  TAKDEVR 71
              D V 
Sbjct: 256 DEGDWVE 262


>gi|148554242|ref|YP_001261824.1| GMP synthase [Sphingomonas wittichii RW1]
 gi|148499432|gb|ABQ67686.1| GMP synthase (glutamine-hydrolyzing) [Sphingomonas wittichii RW1]
          Length = 530

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R-ETAKDEV 70
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R   A   V
Sbjct: 226 IRQQVGDGRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRMGEADQVV 279

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEHAKTI-NATL 121
               +      I    V+ +             EA+               AK I  A  
Sbjct: 280 GLFRE---HYGIPLVHVNAETLFLNGLKGVTDPEAKRKFIGKTFIEVFEAEAKKIGGADF 336

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R+  
Sbjct: 337 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRALG 393

Query: 182 LQRNIS 187
            +  + 
Sbjct: 394 RELGLP 399


>gi|332359520|gb|EGJ37339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1056]
          Length = 373

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H      DQ     +   R      ++   LS +    L         P   
Sbjct: 120 GADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----PLGH 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 174 LEKPEVRAIAERAGLA 189


>gi|328945150|gb|EGG39305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1087]
          Length = 373

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H      DQ     +   R      ++   LS +    L         P   
Sbjct: 120 GADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----PLGH 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 174 LEKPEVRAIAERAGLA 189


>gi|295705537|ref|YP_003598612.1| hypothetical protein BMD_3422 [Bacillus megaterium DSM 319]
 gi|294803196|gb|ADF40262.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
          Length = 269

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 34/180 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS  LL          + G     A++ D     +++ E   V  +  ++ 
Sbjct: 19  VVVAFSGGVDSTFLLKVAVE-----TLGNENVIAVTADSETYPSSELEEAKV--LARQIG 71

Query: 82  IAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + H ++          S+         + + +  +    +      I+     DD     
Sbjct: 72  VRHQIIETSELAIPGYSENNKNRCYFCKSSLFDHLKPIIEEYQFKTIVYGAIADD----- 126

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDPS 193
            M   R          GM           I  P L     +++IR    Q  +     PS
Sbjct: 127 -MNEHR---------PGMKAAKEKG----IRGPLLEANLFKKEIRELSRQLELPTWNKPS 172


>gi|125719134|ref|YP_001036267.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sanguinis SK36]
 gi|166235087|sp|A3CRB2|MNMA_STRSV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|125499051|gb|ABN45717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Streptococcus sanguinis SK36]
          Length = 373

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H      DQ     +   R      ++   LS +    L         P   
Sbjct: 120 GADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----PLGH 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 174 LEKPEVRAIAERAGLA 189


>gi|323350805|ref|ZP_08086464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis VMC66]
 gi|322122979|gb|EFX94682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis VMC66]
 gi|332365071|gb|EGJ42836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK355]
          Length = 373

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H      DQ     +   R      ++   LS +    L         P   
Sbjct: 120 GADYVATGHYAQIKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----PLGH 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 174 LEKPEVRAIAERAGLA 189


>gi|218682213|ref|ZP_03529814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhizobium etli CIAT 894]
          Length = 294

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 38/200 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHT--------FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           K + A  + T H          D        R      ++   L       +     ++ 
Sbjct: 126 KELGADALATGHYIRSRPNPLADKPGRRALFRPADADRDQSYFLFATTQEQI----DYLR 181

Query: 167 RPFLRCRREDIRSFLLQRNI 186
            P     + + R    +  +
Sbjct: 182 FPLGGLPKAETRRLAEEMGL 201


>gi|292670858|ref|ZP_06604284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas noxia ATCC 43541]
 gi|292647479|gb|EFF65451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas noxia ATCC 43541]
          Length = 365

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 67/210 (31%), Gaps = 61/210 (29%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------ 65
               ++VA+SGG DS        ++L +R +       + V   L               
Sbjct: 6   KKERVVVAMSGGVDS----SLAAALLQERGY-----DVVGVTMRLSAENRDAPSNDRSCC 56

Query: 66  ---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REAR 106
              + D+ R V+DV   L I H V+ +                          A  R  +
Sbjct: 57  SLISVDDARRVADV---LGIPHYVMDFTEPFQHAVIDYFFNEYLHGRTPNPCIACNRFIK 113

Query: 107 YALISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
           +  +   +K + A+ I T H        D   T  +R       KG+ L      +LY +
Sbjct: 114 FEGLLHKSKELGASYIATGHYARIDHGKDG--TYRLR-------KGLDLEKDQSYVLYHM 164

Query: 162 NLWI----SRPFLRCRREDIRSFLLQRNIS 187
           N  I      P     + + R    Q ++ 
Sbjct: 165 NQEILAHVLLPLGVFSKHETRRMAEQYHLP 194


>gi|307300497|ref|ZP_07580277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti BL225C]
 gi|307318362|ref|ZP_07597797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti AK83]
 gi|306896044|gb|EFN26795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti AK83]
 gi|306904663|gb|EFN35247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium meliloti BL225C]
          Length = 398

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  + I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+     +  G   +      + +            
Sbjct: 126 KELGADALATGH---------YIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R+   +  +
Sbjct: 177 IDYLRFPLGGLPKSETRALAEEMGL 201


>gi|103486127|ref|YP_615688.1| GMP synthase [Sphingopyxis alaskensis RB2256]
 gi|98976204|gb|ABF52355.1| GMP synthase (glutamine-hydrolyzing) [Sphingopyxis alaskensis
           RB2256]
          Length = 537

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L  +SGG DS    + +H  + +      + + + VDH  LR   +++V 
Sbjct: 233 IRAQVGDQRVLCGLSGGVDSAVAAVLIHEAIGE------QLTCVFVDHGLLRMNEREQVE 286

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
            +        I   VV  +            P+        E       E  K   A  +
Sbjct: 287 RLFR--DHYNIPLVVVDAEERFMAGLAGITDPEQKRKFIGAEFINVFEEEARKIGGADFL 344

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 345 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRLLGK 401

Query: 183 QRNIS 187
           +  + 
Sbjct: 402 ELGLP 406


>gi|299783033|gb|ADJ41031.1| tRNA methyl transferase [Lactobacillus fermentum CECT 5716]
          Length = 377

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 71/197 (36%), Gaps = 39/197 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++     +  T  +   ++ R             +    E+A  +
Sbjct: 60  AKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H  D   D+   +  MR++    ++   LS +    L      +  P     
Sbjct: 120 GADYVATGHYADLKRDEAGNMHLMRAKDQTKDQTYFLSQLDHAQL----DKVLFPLAGYT 175

Query: 174 REDIRSFLLQRNISWCE 190
           ++++R       +   +
Sbjct: 176 KKEVRQLAKDAGLVVAD 192


>gi|227514810|ref|ZP_03944859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus fermentum ATCC 14931]
 gi|260663608|ref|ZP_05864497.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
 gi|227086800|gb|EEI22112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus fermentum ATCC 14931]
 gi|260551834|gb|EEX24949.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN]
          Length = 377

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 71/197 (36%), Gaps = 39/197 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++     +  T  +   ++ R             +    E+A  +
Sbjct: 60  AKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H  D   D+   +  MR++    ++   LS +    L      +  P     
Sbjct: 120 GADYVATGHYADLKRDEAGNMHLMRAKDQTKDQTYFLSQLDHAQL----DKVLFPLAGYT 175

Query: 174 REDIRSFLLQRNISWCE 190
           ++++R       +   +
Sbjct: 176 KKEVRQLAKDAGLVVAD 192


>gi|184155064|ref|YP_001843404.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus fermentum IFO
           3956]
 gi|229486413|sp|B2GB92|MNMA_LACF3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|183226408|dbj|BAG26924.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Lactobacillus fermentum IFO 3956]
          Length = 377

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 71/197 (36%), Gaps = 39/197 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++     +  T  +   ++ R             +    E+A  +
Sbjct: 60  AKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H  D   D+   +  MR++    ++   LS +    L      +  P     
Sbjct: 120 GADYVATGHYADLKRDEAGNMHLMRAKDQTKDQTYFLSQLDHAQL----DKVLFPLAGYT 175

Query: 174 REDIRSFLLQRNISWCE 190
           ++++R       +   +
Sbjct: 176 KKEVRQLAKDAGLVVAD 192


>gi|295395145|ref|ZP_06805353.1| GMP synthase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971907|gb|EFG47774.1| GMP synthase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 526

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 37/197 (18%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V    ++ A+SGG DS      +H  + D      + + + VDH  LR+  + +V
Sbjct: 214 LIRQQVGDKQVICALSGGVDSAVAAALVHKAVGD------QLTCVFVDHGLLRKDERKQV 267

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
               D  +   +    V   +           P+T      RE    +    A       
Sbjct: 268 E--QDYVASTGVRLVTVDAADQFVNELAGVTDPETKRKIIGREF-IRVFETAAAD----- 319

Query: 122 IMTAHTFDDQLE--------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFL 170
            + A + +D  E        T+Y          G            +  DL   +  P  
Sbjct: 320 -LVAQSRND-AEPIEFLVQGTLYPDVVESGGGSGTANIKSHHNVGGLPEDLQFKLVEPLR 377

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  + 
Sbjct: 378 ALFKDEVREIGRELGLP 394


>gi|258645897|ref|ZP_05733366.1| GMP synthase [Dialister invisus DSM 15470]
 gi|260403268|gb|EEW96815.1| GMP synthase [Dialister invisus DSM 15470]
          Length = 512

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 28/196 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   ++L A+SGG DS    + +H  + D      K + + VDH  LR+    E  
Sbjct: 210 IRQQVGDHNVLCALSGGVDSSVAAVLVHKAVGD------KLTCVFVDHGFLRQG---EAE 260

Query: 72  YVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D   ++ +I                  ++P+    A   E  +    E  K  +   
Sbjct: 261 QVVDTFTNKFKIKLIHKDASRHFLSLLKGVTEPEKKRKAIGAEFIHTFQEEANKLEDVKF 320

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R   
Sbjct: 321 LVQGTLYPDVVE------SGTATAATIKSHHNVGGLPKDMKFELIEPLRELFKDEVRQLG 374

Query: 182 LQRNISWCEDPSNTDD 197
            +  +   ED  N   
Sbjct: 375 RELGLP--EDVINRQP 388


>gi|225016463|ref|ZP_03705655.1| hypothetical protein CLOSTMETH_00369 [Clostridium methylpentosum
           DSM 5476]
 gi|224950765|gb|EEG31974.1| hypothetical protein CLOSTMETH_00369 [Clostridium methylpentosum
           DSM 5476]
          Length = 510

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS  L   L   +        + + + VDH L R+   DEV 
Sbjct: 209 IREKVGNGKVLLALSGGVDSSVLAALLSKAI------GSQLTCVFVDHGLMRKNEGDEVE 262

Query: 72  YV 73
             
Sbjct: 263 AA 264


>gi|146340154|ref|YP_001205202.1| GMP synthase [Bradyrhizobium sp. ORS278]
 gi|226738392|sp|A4YSU1|GUAA_BRASO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|146192960|emb|CAL76967.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Bradyrhizobium sp. ORS278]
          Length = 535

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR     E  
Sbjct: 231 IRAQVGQGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLLRLN---EAE 281

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D+      I    V             + P+       R       +E  K   A  
Sbjct: 282 TVVDLFRHHYNIPLVHVDASKLFLGELAGVTDPEAKRKTIGRLFIDVFEAEAKKIGGADF 341

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 342 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPARMNMKLVEPLRELFKDEVRVLG 398

Query: 182 LQRNIS 187
            +  + 
Sbjct: 399 RELGLP 404


>gi|17989232|ref|NP_541865.1| GMP synthase [Brucella melitensis bv. 1 str. 16M]
 gi|21759171|sp|Q8YBL2|GUAA_BRUME RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|17985091|gb|AAL54129.1| gmp synthase (glutamine-hydrolyzing) [Brucella melitensis bv. 1
           str. 16M]
          Length = 507

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 66/192 (34%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++ A+SGG DS    +  H  + D      + + I VDH L R  
Sbjct: 210 EQAVEAIRKQVGSGKVICALSGGVDSSVAALLAHEAVGD------QLTCILVDHGLMR-- 261

Query: 66  AKDEVRYVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
            KDEV+ V ++      +   +V   +         S P+       R        E  K
Sbjct: 262 -KDEVQQVVEMFREHYNLPLILVDASDRFIGALEGESDPEKKRKTIGRLFIEVFEEEARK 320

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E+V   S        +        +   + + +  P     ++
Sbjct: 321 LGGADFLVQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKD 377

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 378 EVRLLGKELGLP 389


>gi|330835731|ref|YP_004410459.1| GMP synthase (glutamine-hydrolyzing) [Metallosphaera cuprina Ar-4]
 gi|329567870|gb|AEB95975.1| GMP synthase (glutamine-hydrolyzing) [Metallosphaera cuprina Ar-4]
          Length = 369

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 26/198 (13%)

Query: 1   MFL--SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     IE +   V+S+V    ++ AVSGG DS    + ++ +L D      K + + +
Sbjct: 1   MFSPEKFIEEIEPQVKSIVGNNRLVAAVSGGVDSTTAAVIMYRILGD------KVTPVML 54

Query: 59  DHC-LRETAKDEVRYVSDVCSRLRIAHSVVSW-----KNSKPQTGLMAAAREAR---YAL 109
           D   LRE    E   V    S + I   +        K  +      A  ++ R   Y+ 
Sbjct: 55  DTGFLREN---EAERVKSSLSNI-IPLEIEDVSEMFMKGLEGIGDAEAKRKKFRELFYST 110

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           IS      N+  ++      D +ET     +     +   L  +           +  P 
Sbjct: 111 ISNIVSKYNSKFLVQGTIAADWIET-----KGGIKTQHNVLVQLGINTEKTWGFSLIEPL 165

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R       + 
Sbjct: 166 ADLYKNEVRELARYIGLP 183


>gi|218532352|ref|YP_002423168.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium
           chloromethanicum CM4]
 gi|218524655|gb|ACK85240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium chloromethanicum CM4]
          Length = 410

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 49/211 (23%)

Query: 15  SLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET--- 65
            L  P H   ++VA+SGG DS  +   L     D     ++      DH     R+    
Sbjct: 30  DLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRKGACC 85

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYAL 109
           A  ++     V   L I H V+ +++   ++ +   A                R  ++  
Sbjct: 86  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFADSYLSGETPIPCVECNRSVKFRD 145

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------Y 159
           +   A+ + A  + T H            + R   E G  L    D              
Sbjct: 146 LLGLARELGAEALATGHYV----------ASRARPEGGRALYRALDPARDQSYFLYATTP 195

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           +   ++  P     +++ R+   +  ++  +
Sbjct: 196 EQLAYLRFPLGERPKDETRALARELGLAVAD 226


>gi|94496230|ref|ZP_01302808.1| GMP synthase [Sphingomonas sp. SKA58]
 gi|94424409|gb|EAT09432.1| GMP synthase [Sphingomonas sp. SKA58]
          Length = 523

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +RS V    ++  +SGG DS    + +H  + D      + + + VDH L R     E  
Sbjct: 219 IRSQVGDGRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRLG---EAE 269

Query: 72  YVSDVCSRL-RIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      I    V+ ++           P+        E       E AK   A  
Sbjct: 270 QVVSLFREHYGIKLVHVNAEDRFLGGLAGLTDPEKKRKFIGGEFIAVFEEEAAKIGGADF 329

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 330 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRVLG 386

Query: 182 LQRNIS 187
            +  + 
Sbjct: 387 KELGLP 392


>gi|242042037|ref|XP_002468413.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
 gi|241922267|gb|EER95411.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor]
          Length = 489

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 44/203 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KD 68
            P  + V VSGG DS   L  LH+     +   +K          +E            +
Sbjct: 76  APLRVAVLVSGGVDSSVALRLLHAAGHHCTAFYLKIW-------FQEDFRNFWSECPWDE 128

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISE 112
           +++Y   VC ++ +   VV   +                 R            ++    E
Sbjct: 129 DLKYAQAVCDKIDVPLEVVHLSDEYWNYVVSHMINEYRCGRTPNPDVLCNTRIKFGAFLE 188

Query: 113 HAKTINATLIMTAH--------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
             + +    I + H        T + +  ++   S+    ++   LS +    L      
Sbjct: 189 AIENLGFDYIASGHYAHVVHPSTENTEAPSILQLSKDKVKDQTYFLSHLSQPQLRR---- 244

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++R    Q  + 
Sbjct: 245 LLFPLGCITKDEVRRLATQMGLP 267


>gi|294086052|ref|YP_003552812.1| GMP synthase - glutamine amidotransferase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665627|gb|ADE40728.1| GMP synthase - glutamine amidotransferase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 515

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 23/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V  A ++  +SGG DS    + +H  + D      + + + VDH  LR+   +EV
Sbjct: 210 AIRKQVGDAKVICGLSGGVDSSVTAVLIHEAIGD------QLTCVFVDHGLLRKGEAEEV 263

Query: 71  RYVSDVCSRLRIA--HSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKTI-NAT 120
             V        I   H  VS    +  +G+     + R         +  E A+ I  A 
Sbjct: 264 --VRLFGGHYNIPLIHRDVSEMFLERLSGVSDP-EQKRKIIGGSFIEVFDEEAQKIDGAR 320

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E++   S    ++  +        +  D+ L +  P     ++++R+ 
Sbjct: 321 FLAQGTLYPDVIESI---SAAGGSDVTIKSHHNVGGLPDDMKLDLVEPLRELFKDEVRNL 377

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 378 GRELGLP 384


>gi|163867477|ref|YP_001608676.1| GMP synthase [Bartonella tribocorum CIP 105476]
 gi|161017123|emb|CAK00681.1| GMP synthase [Bartonella tribocorum CIP 105476]
          Length = 530

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 22/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S  E     +R  V    ++  +SGG DS  + + LH  + D      + + I VDH L 
Sbjct: 218 SYREQAIATIRQKVGKNRVICGLSGGVDSSVVAVLLHEAIGD------QLTCILVDHGLM 271

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R+    EV  +        I    V+  +         + P+       R        E 
Sbjct: 272 RKNEAQEVLTLFR--DHYNIELIHVNAADIFLNALEGETDPEKKRKTIGRLFIEVFEEET 329

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K   A  +     + D +E+V            +        +   +N+ +  P     
Sbjct: 330 KKIGGAEFLAQGTLYPDVIESV----SAIGESVTIKSHHNVGGLPEQMNMKLVEPLRELF 385

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 386 KDEVRLLGRELGLP 399


>gi|163731722|ref|ZP_02139169.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseobacter litoralis Och 149]
 gi|161395176|gb|EDQ19498.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseobacter litoralis Och 149]
          Length = 522

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + + VDH L R+   +  +
Sbjct: 218 IREQVGSGRVICALSGGVDSSVAAVLIHEAIGD------QLTCVYVDHGLMRK--DESAQ 269

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
            V        +          +             R+    L  E  +        A  +
Sbjct: 270 VVGMFREHYNLPLIHADESDLFLGKLNGVSDPETKRKIIGGLFIEVFEKYAKEIGGADFL 329

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R+   
Sbjct: 330 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRALGH 386

Query: 183 QRNIS 187
           +  + 
Sbjct: 387 ELGLP 391


>gi|257467821|ref|ZP_05631917.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062110|ref|ZP_07926595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313687786|gb|EFS24621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 346

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 30/191 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DS      L            +   ++++H   ++  +E++    +C  L I
Sbjct: 7   VIGMSGGVDSSVGAYLLKE-------QGYEVIGVTLNHKKEKSLNEEIKAAQRICDFLGI 59

Query: 83  AHSVVSWKNSKPQT------------------GLMAAAREARYALISEHAKTINATLIMT 124
            H ++  +    +                    +     + R  ++ E A    A  + T
Sbjct: 60  EHKIIDIEELFQKEVIDDFLEGYSQGITPSPCVICDERVKMR--VLFETADKEGAYFVAT 117

Query: 125 AHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H    +  E       +   +     S M   +  D    +  P     ++ IR     
Sbjct: 118 GHYSSVEYSEEFKRDLLKVSYDPRKDQSYMLYRLDNDKISRLLFPLHSYEKKQIREIAKN 177

Query: 184 RNISWC--EDP 192
             +     ED 
Sbjct: 178 IGLEVHDKEDS 188


>gi|150015984|ref|YP_001308238.1| tRNA-specific 2-thiouridylase MnmA [Clostridium beijerinckii NCIMB
           8052]
 gi|205813680|sp|A6LSF2|MNMA_CLOB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149902449|gb|ABR33282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 358

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 61/207 (29%), Gaps = 58/207 (28%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVDHC 61
              +LV +SGG DS      L                      +R  G    SA+     
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKQQGYDVIGATMQIWQHDEEFEEREGGCCSLSAV----- 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-A 105
                 D+ R V   C +L I   V+++++   +                       +  
Sbjct: 57  ------DDARRV---CDKLDIPFYVLNFRDYFKEKVIDKFVQEYIDGKTPNPCIECNKHL 107

Query: 106 RYALISEHAKTINATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           ++  +   A+ I A  + T H       DD+   + +RS  D  ++   L         D
Sbjct: 108 KFDELLRRARGIGADYVATGHYAKIEKRDDRY--LLIRSDDDRKDQTYALYNFTQ----D 161

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
                  P     +  IR    +  ++
Sbjct: 162 QLEHTLMPCGDYEKTKIREIAKEIGLA 188


>gi|163868748|ref|YP_001609965.1| tRNA-specific 2-thiouridylase MnmA [Bartonella tribocorum CIP
           105476]
 gi|205812594|sp|A9IWH0|MNMA_BART1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161018412|emb|CAK01970.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella tribocorum CIP 105476]
          Length = 407

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 50/217 (23%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFL+ ++     +      + I+VA+SGG DS  +   L     +     ++      DH
Sbjct: 1   MFLNSLD-----LPGQPEDSRIVVAMSGGVDSSVVAGLLKREGYNVIGITLQLY----DH 51

Query: 61  C---LRET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------- 107
                R     A  ++     V   L I H V+ ++    +  +   A    +       
Sbjct: 52  GAATHRVGACCAGQDIEDARRVAEMLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPC 111

Query: 108 ---------ALISEHAKTINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMG 149
                    A +   A+ + A  + T H                    R   +  ++   
Sbjct: 112 IACNQTVKFADLLATARELGADALATGHYIRSRSHGAHR------ALFRPLDNDRDQSYF 165

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           L       +     ++  P     +  +R    +  +
Sbjct: 166 LFATTQEQI----DYLRFPLGDLPKARVREIAAEMGL 198


>gi|86355954|ref|YP_467846.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhizobium etli CFN 42]
 gi|123513305|sp|Q2KDG7|GUAA_RHIEC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|86280056|gb|ABC89119.1| GMP synthase - glutamine amidotransferase protein [Rhizobium etli
           CFN 42]
          Length = 520

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE  
Sbjct: 216 IRKQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEAA 266

Query: 72  YVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      L + H   S +        S P+T      R        E  K   A  
Sbjct: 267 NVVAMFREHYNLHLLHVDASDRFIGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGADF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + + +  P     ++++R+  
Sbjct: 327 LGQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  + 
Sbjct: 384 RELGLP 389


>gi|256846987|ref|ZP_05552433.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715651|gb|EEU30626.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN]
          Length = 377

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 71/197 (36%), Gaps = 39/197 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAKTI 117
           + V +++ I +  V+++        K         R          E ++    E+A  +
Sbjct: 60  AKVATQIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H  D   D    +  MR++  + ++   LS +     ++    +  P     
Sbjct: 120 GADYVATGHYADLKRDADGNMHLMRAKDQHKDQTYFLSQLD----HEQLDHVMFPLANYT 175

Query: 174 REDIRSFLLQRNISWCE 190
           + +IR    +  ++  +
Sbjct: 176 KPEIRQIAKEAGLAVAD 192


>gi|86750300|ref|YP_486796.1| GMP synthase [Rhodopseudomonas palustris HaA2]
 gi|123292405|sp|Q2IV75|GUAA_RHOP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|86573328|gb|ABD07885.1| GMP synthase (glutamine-hydrolyzing) [Rhodopseudomonas palustris
           HaA2]
          Length = 540

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR   KDE +
Sbjct: 236 IRAQVGTGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGMLR---KDEAK 286

Query: 72  YVSDVCSRL-RIAHSVVSWKNSKPQTGLM------AAAREARYALISEHAKTI-----NA 119
            V D+      I    V    S+   G +         R+    L  +           A
Sbjct: 287 TVVDLFRHHYNIPL--VHVDASETFLGALSGVTDPEQKRKIIGKLFIDVFDAEAKVVGGA 344

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V   S        +        +   +N+ +  P     ++++R+
Sbjct: 345 DYLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRA 401

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 402 LGRELGLP 409


>gi|296536614|ref|ZP_06898691.1| GMP synthase (glutamine-hydrolyzing) [Roseomonas cervicalis ATCC
           49957]
 gi|296263060|gb|EFH09608.1| GMP synthase (glutamine-hydrolyzing) [Roseomonas cervicalis ATCC
           49957]
          Length = 520

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + I VDH  +R  A +  +
Sbjct: 216 IRAQVGDGKVICGLSGGVDSSVAAVLIHEAIGD------QLTCIYVDHGVMR--AGETEQ 267

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V+    R  I        +         + P+       R        E  K   A  +
Sbjct: 268 VVATFRDRFNIKLVHRDASDLFLGQLAGVTDPELKRKTIGRLFIEVFEEEQEKIGGADFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +  D+ + +  P     ++++R+   
Sbjct: 328 AQGTLYPDVIESV---SATGGPSVTIKSHHNVGGLPEDMRMKLVEPLRDLFKDEVRALGR 384

Query: 183 QRNIS 187
           +  + 
Sbjct: 385 ELGLP 389


>gi|291539354|emb|CBL12465.1| conserved hypothetical protein TIGR00268 [Roseburia intestinalis
           XB6B4]
          Length = 274

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 57/197 (28%), Gaps = 38/197 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S  E  +     L     + VA S G DS  LL A     + ++ G     A++      
Sbjct: 3   SVQEKYKNLQEYLKSLGSVAVAFSSGVDSTFLLAA-----AKKTLGADHVIAVT------ 51

Query: 64  ETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEH 113
            ++    K E+      C    I H V   +    +             +   +  I E 
Sbjct: 52  ASSCSFPKRELEEAKQFCKEQGIRHIVCKSEELDIEGFRQNPKNRCYLCKHELFEKILEI 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK  +   +      DD                G    G+       +   +    L   
Sbjct: 112 AKEYHINAVAEGSNMDDN---------------GDYRPGLVAVAELGIKSPLREALLN-- 154

Query: 174 REDIRSFLLQRNISWCE 190
           +E+IR+   +  +   +
Sbjct: 155 KEEIRTLSKEMGLPTWD 171


>gi|240145427|ref|ZP_04744028.1| PP-loop family protein [Roseburia intestinalis L1-82]
 gi|257202556|gb|EEV00841.1| PP-loop family protein [Roseburia intestinalis L1-82]
          Length = 274

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 57/197 (28%), Gaps = 38/197 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S  E  +     L     + VA S G DS  LL A     + ++ G     A++      
Sbjct: 3   SVQEKYKNLQEYLKSLGSVAVAFSSGVDSTFLLAA-----AKKTLGADHVIAVT------ 51

Query: 64  ETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEH 113
            ++    K E+      C    I H V   +    +             +   +  I E 
Sbjct: 52  ASSCSFPKRELEEAKQFCKEQGIRHIVCKSEELDIEGFRQNPKNRCYLCKHELFEKILEI 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK  +   +      DD                G    G+       +   +    L   
Sbjct: 112 AKEYHINAVAEGSNMDDN---------------GDYRPGLVAVAELGIKSPLREALLN-- 154

Query: 174 REDIRSFLLQRNISWCE 190
           +E+IR+   +  +   +
Sbjct: 155 KEEIRTLSKEMGLPTWD 171


>gi|322386456|ref|ZP_08060085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus cristatus ATCC 51100]
 gi|321269542|gb|EFX52473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus cristatus ATCC 51100]
          Length = 373

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H      DQ     +   R      ++   LS +    L         P
Sbjct: 117 LTLGADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKPEVRAVAERAGLA 189


>gi|209551875|ref|YP_002283792.1| GMP synthase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|226739711|sp|B5ZYE9|GUAA_RHILW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|209537631|gb|ACI57566.1| GMP synthase, large subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 520

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE  
Sbjct: 216 IRKQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEAA 266

Query: 72  YVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      L + H   S +        S P+T      R        E  K   A  
Sbjct: 267 NVVAMFREHYNLHLLHVDASDRFIGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGADF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + + +  P     ++++R+  
Sbjct: 327 LGQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  + 
Sbjct: 384 RELGLP 389


>gi|323486116|ref|ZP_08091447.1| hypothetical protein HMPREF9474_03198 [Clostridium symbiosum
           WAL-14163]
 gi|323692975|ref|ZP_08107196.1| GMP synthase domain-containing protein [Clostridium symbiosum
           WAL-14673]
 gi|323400683|gb|EGA93050.1| hypothetical protein HMPREF9474_03198 [Clostridium symbiosum
           WAL-14163]
 gi|323502976|gb|EGB18817.1| GMP synthase domain-containing protein [Clostridium symbiosum
           WAL-14673]
          Length = 430

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +RS V    +L+A+SGG DS  +   L   +        +   + V+H 
Sbjct: 118 MKNFIEDQAELIRSQVGDRKVLLALSGGVDSSVVAALLIKAIGQ------QLVCVHVNHG 171

Query: 62  L 62
           L
Sbjct: 172 L 172


>gi|255326899|ref|ZP_05367975.1| GMP synthase [Rothia mucilaginosa ATCC 25296]
 gi|255296116|gb|EET75457.1| GMP synthase [Rothia mucilaginosa ATCC 25296]
          Length = 530

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS      +H  + D      + +   +DH  LRE  +++V 
Sbjct: 219 IREQVGSDRVICALSGGVDSSVAAALVHKAVGD------QLTCFFIDHGLLREGEREQVE 272

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYAL------ISEHAKT 116
              D  + + I    +              +P+    A  RE   +       +   A  
Sbjct: 273 --QDYAASMGIKVITIDESERFLSALDGITEPEAKRKAIGREFIRSFEEAQRKLIAEAGE 330

Query: 117 INAT--LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             A    ++    + D +E+             +        +  DL   +  P     +
Sbjct: 331 EGADIKFLVQGTLYPDVVES-----GGGDGTANIKSHHNVGGLPDDLTFELVEPLRTLFK 385

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 386 DEVRAIGRELGVP 398


>gi|163797472|ref|ZP_02191423.1| GMP synthase (glutamine-hydrolyzing) [alpha proteobacterium BAL199]
 gi|159177221|gb|EDP61780.1| GMP synthase (glutamine-hydrolyzing) [alpha proteobacterium BAL199]
          Length = 515

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR    D+V 
Sbjct: 211 IREQVGSGRVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRAGEADDV- 263

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I                    P+       R        E  K  +A  +
Sbjct: 264 -VRMFRDHYNIPLIARDASELFLGELEGVDDPELKRKTIGRLFIDVFQQEADKIKDARFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +NL +  P     ++++R    
Sbjct: 323 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNLKLVEPLRELFKDEVRELGC 379

Query: 183 QRNIS 187
           +  + 
Sbjct: 380 ELGLP 384


>gi|312978380|ref|ZP_07790122.1| GMP synthase [Lactobacillus crispatus CTV-05]
 gi|310894723|gb|EFQ43795.1| GMP synthase [Lactobacillus crispatus CTV-05]
          Length = 488

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR   KDE  
Sbjct: 187 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLR---KDEGN 237

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +   L +    V+ +          + P+       +E       E  K  +   
Sbjct: 238 QVMQALNKDLGVNIIRVNAQKRFLDKLKGVTDPEKKRKIIGKEFIEVFNEEAKKLKDVDF 297

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D++  +  P  +  ++++R   
Sbjct: 298 LAQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELG 351

Query: 182 LQRNISW 188
            +  I  
Sbjct: 352 EKLGIPH 358


>gi|295692103|ref|YP_003600713.1| gmp synthase (glutamine-hydrolyzing) [Lactobacillus crispatus ST1]
 gi|295030209|emb|CBL49688.1| GMP synthase (Glutamine-hydrolyzing) [Lactobacillus crispatus ST1]
          Length = 516

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR   KDE  
Sbjct: 215 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLR---KDEGN 265

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +   L +    V+ +          + P+       +E       E  K  +   
Sbjct: 266 QVMQALNKDLGVNIIRVNAQKRFLDKLKGVTDPEKKRKIIGKEFIEVFNEEAKKLKDVDF 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D++  +  P  +  ++++R   
Sbjct: 326 LAQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELG 379

Query: 182 LQRNISW 188
            +  I  
Sbjct: 380 EKLGIPH 386


>gi|295676799|ref|YP_003605323.1| GMP synthase, large subunit [Burkholderia sp. CCGE1002]
 gi|295436642|gb|ADG15812.1| GMP synthase, large subunit [Burkholderia sp. CCGE1002]
          Length = 527

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H+++ +SGG DS      LH  + D      + + + VDH  LR     E  
Sbjct: 216 IREQVGNEHVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     L +   V+    S+           P+        E      +E  K  +A
Sbjct: 267 QVMALFADHLGVK--VIHVDASEAFLGKLAGVTDPEAKRKIIGAEFVEVFQAEAGKLTDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+     +   A + +        +   LNL +  P     ++++R 
Sbjct: 325 KWLAQGTIYPDVIES---AGKGKKAAQTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRE 381

Query: 180 FLLQRNISW 188
             ++  +  
Sbjct: 382 LGVKLGLPH 390


>gi|256844375|ref|ZP_05549861.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           125-2-CHN]
 gi|293381957|ref|ZP_06627919.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus crispatus
           214-1]
 gi|256613453|gb|EEU18656.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           125-2-CHN]
 gi|290921464|gb|EFD98504.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus crispatus
           214-1]
          Length = 516

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR   KDE  
Sbjct: 215 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLR---KDEGN 265

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +   L +    V+ +          + P+       +E       E  K  +   
Sbjct: 266 QVMQALNKDLGVNIIRVNAQKRFLDKLKGVTDPEKKRKIIGKEFIEVFNEEAKKLKDVDF 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D++  +  P  +  ++++R   
Sbjct: 326 LAQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELG 379

Query: 182 LQRNISW 188
            +  I  
Sbjct: 380 EKLGIPH 386


>gi|227877995|ref|ZP_03995997.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256849225|ref|ZP_05554658.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           MV-1A-US]
 gi|262047241|ref|ZP_06020199.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           MV-3A-US]
 gi|227862416|gb|EEJ69933.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256714001|gb|EEU28989.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           MV-1A-US]
 gi|260572486|gb|EEX29048.1| GMP synthase/glutamine amidotransferase [Lactobacillus crispatus
           MV-3A-US]
          Length = 516

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR   KDE  
Sbjct: 215 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLR---KDEGN 265

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +   L +    V+ +          + P+       +E       E  K  +   
Sbjct: 266 QVMQALNKDLGVNIIRVNAQKRFLDKLKGVTDPEKKRKIIGKEFIEVFNEEAKKLKDVDF 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D++  +  P  +  ++++R   
Sbjct: 326 LAQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELG 379

Query: 182 LQRNISW 188
            +  I  
Sbjct: 380 EKLGIPH 386


>gi|325291715|ref|YP_004277579.1| GMP synthase [Agrobacterium sp. H13-3]
 gi|325059568|gb|ADY63259.1| GMP synthase [Agrobacterium sp. H13-3]
          Length = 525

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 61/191 (31%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R-ETAKDEV 70
           +R  V    +L A+SGG DS    I +H  + D      + + + VDH L R   ++  V
Sbjct: 216 IRDQVGTGRVLCALSGGVDSSVAAILIHEAIGD------QLTCVYVDHGLMRLGESEQVV 269

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAR----EARYALISEHAKTI 117
               D      I    V   +         S P+       R              A   
Sbjct: 270 GMFRD---HYNIPLVHVDAADMFLGQLSGVSDPEVKRKTIGRLFIEVFEAEAAKIAADGK 326

Query: 118 NA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            A   +     + D +E+V   S        +        +   +N+ +  P     +++
Sbjct: 327 GAPNFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDE 383

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 384 VRALGRELGLP 394


>gi|325684811|gb|EGD26962.1| GMP synthase [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 517

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 28/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A++++ +SGG DS      LH  +        + +AI VDH  LR+   DEV 
Sbjct: 216 IREEVGDANVILGISGGVDSSVTATLLHKAI------GSQLTAIFVDHGLLRKNESDEVM 269

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NAT 120
             + +   L +  ++V           +A      + R         + ++ AK I +A 
Sbjct: 270 --AALKEGLGV--NIVRVDAKDRFMSKLAGVTDPEKKRKIIGNEFVQVFNDEAKKIKDAK 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E              +        +  D+   +  P  +  ++++R  
Sbjct: 326 FLAQGTLYTDVIE------SGTDTAHTIKSHHNVGGLPEDMQFKLIEPLRQLFKDEVRVL 379

Query: 181 LLQRNISW 188
             +  +  
Sbjct: 380 GEKLGLPH 387


>gi|320547685|ref|ZP_08041970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equinus ATCC 9812]
 gi|320447760|gb|EFW88518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus equinus ATCC 9812]
          Length = 373

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 68/197 (34%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQVGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L      +  P  
Sbjct: 117 MTLGADYVATGHYAQVSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQK----VMFPLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRKIAERAGLA 189


>gi|313123027|ref|YP_004033286.1| bifunctional gmp synthase/glutamine amidotransferase protein
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279590|gb|ADQ60309.1| Bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 517

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 28/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A++++ +SGG DS      LH  +        + +AI VDH  LR+   DEV 
Sbjct: 216 IREEVGDANVILGISGGVDSSVTATLLHKAI------GSQLTAIFVDHGLLRKNESDEVM 269

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NAT 120
             + +   L +  ++V           +A      + R         + ++ AK I +A 
Sbjct: 270 --AALKEGLGV--NIVRVDAKDRFMSKLAGVTDPEKKRKIIGNEFVQVFNDEAKKIKDAK 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E              +        +  D+   +  P  +  ++++R  
Sbjct: 326 FLAQGTLYTDVIE------SGTDTAHTIKSHHNVGGLPEDMQFKLIEPLRQLFKDEVRVL 379

Query: 181 LLQRNISW 188
             +  +  
Sbjct: 380 GEKLGLPH 387


>gi|291523444|emb|CBK81737.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit [Coprococcus catus GD/7]
          Length = 329

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 30/196 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     ++  V    +L+A+SGG DS  +   L   +        +   + V+H L 
Sbjct: 23  TFIEEQIALIKEQVGDKKVLLALSGGVDSSVVAALLIKAIGQ------QLVCVHVNHGLL 76

Query: 63  RETAKDEVRYVSDVCSRL---RIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V +V        + +   + +      G+            E       E
Sbjct: 77  RKG---EPEQVVEVFRNQMNANLIYVDATDRFLDKLAGVEDPETKRKIIGGEFIEVFAEE 133

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D LE          +E+G+        +  D++  +  P    
Sbjct: 134 ARKLDGIEFLAQGTIWPDILE----------SEEGIKAHHNAGGLPEDMDFELVEPVRVL 183

Query: 173 RREDIRSFLLQRNISW 188
            ++++R    +  +  
Sbjct: 184 FKDEVRVVGEELGLPH 199


>gi|258510943|ref|YP_003184377.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477669|gb|ACV57988.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 365

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 40/218 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++ +  +  A +        A+ +   V
Sbjct: 4   RVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDETDENGACT--------AEQDFEDV 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTI 117
             VC ++ I +  V+++    +                       RE ++  +   A  +
Sbjct: 56  RRVCEQIGIPYYGVNFEREYEERVFQHFLEEFKRGRTPNPDVLCNREIKFKELLACALDL 115

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H      D+  TV +   RD  +       M         ++   P     +
Sbjct: 116 GADYLATGHYAQVRKDEDGTVALLRGRDKNKDQTYFLHMLTQAPLRRAMF---PIGHLTK 172

Query: 175 EDIRSFLLQRNISWCE--DPSNTDDRFERVRVRRFVRD 210
            ++R       +   +  D +      ER   R F++ 
Sbjct: 173 PEVRQIARDHGLHVAQKKDSTGICFIGERNF-RAFLQQ 209


>gi|190889964|ref|YP_001976506.1| GMP synthase (glutamine-hydrolyzing) protein [Rhizobium etli CIAT
           652]
 gi|218515693|ref|ZP_03512533.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhizobium etli 8C-3]
 gi|226739709|sp|B3PYH7|GUAA_RHIE6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|190695243|gb|ACE89328.1| GMP synthase (glutamine-hydrolyzing) protein [Rhizobium etli CIAT
           652]
          Length = 520

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE  
Sbjct: 216 IRKQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEAA 266

Query: 72  YVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      L + H   S +        S P+T      R        E  K   A  
Sbjct: 267 NVVAMFREHYNLHLLHVDASDRFIGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGADF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + + +  P     ++++R+  
Sbjct: 327 LGQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  + 
Sbjct: 384 RELGLP 389


>gi|118589178|ref|ZP_01546585.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Stappia aggregata IAM 12614]
 gi|118438507|gb|EAV45141.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Stappia aggregata IAM 12614]
          Length = 523

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR    DEV 
Sbjct: 219 IREQVGDKKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLNEADEV- 271

Query: 72  YVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
            VS       I          +             R+    L  +  +        A  +
Sbjct: 272 -VSMFRDNYNIPLIHADESELFLGELDGVSDPETKRKIIGKLFIDVFQKHANEIEGAEFL 330

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 331 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGR 387

Query: 183 QRNIS 187
           +  + 
Sbjct: 388 ELGLP 392


>gi|78042656|ref|YP_360115.1| hypothetical protein CHY_1281 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77994771|gb|ABB13670.1| conserved hypothetical protein TIGR00268 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 275

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 90/288 (31%), Gaps = 80/288 (27%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +E ++  ++ +     +++A SGG DS  LL     VL D         A++       
Sbjct: 8   KLEKLQNILQEM---GSVVIAFSGGVDSTFLLKVAKDVLGD------NVLAVT------A 52

Query: 65  TA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHA 114
           T+      E+     +     + H ++  +    +             ++  ++ + + A
Sbjct: 53  TSSTYPAIELEEAKKLAQTFGVRHLIIESEELDIKEFVNNPPNRCYFCKKELFSKLLQVA 112

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRC 172
           K    + ++     DD                   L+     +     L +  P      
Sbjct: 113 KKEGFSFVLDGSNADD-------------------LNDFRPGMEAAKELGVRSPLKEAGL 153

Query: 173 RREDIRSFLLQRNISWCEDPS-------------------NTDDR---FER------VRV 204
           +++DIR    +  +     PS                   N  DR   F R      +R+
Sbjct: 154 KKDDIRYLSKEMGLPTWNKPSFACLSSRFPYGTKITKEKLNQVDRGENFLRALGFQQIRL 213

Query: 205 RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK---YLTVHMRSI 249
           R      ++  + +K ++F  L  K    V  L      Y+T+ +   
Sbjct: 214 RHH---GEIARIEIKREQFPLLIEKAQEIVEKLKDCGFTYVTLDLEGY 258


>gi|89898235|ref|YP_515345.1| GMP synthase [Chlamydophila felis Fe/C-56]
 gi|123735915|sp|Q254T8|GUAA_CHLFF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|89331607|dbj|BAE81200.1| GMP synthase [Chlamydophila felis Fe/C-56]
          Length = 512

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 26/197 (13%)

Query: 3   LSPIES--VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +  IE   ++     +     +L+ +SGG DS  L + LH+ L DR       S + VD 
Sbjct: 199 IETIEKQLIQRIKEQVGEKERVLLGLSGGVDSSVLAVLLHNALGDR------LSCVFVDT 252

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREARY-------ALI 110
            L R+    EV  V      L +   V     +     +G+     + R         + 
Sbjct: 253 GLLRKN---EVEEVKQQFLSLGLEIIVEDASETFFYELSGIQDP-EQKRKIIGSTFIEVF 308

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + +K +    +     + D +E+    ++   A + +        +   LNL +  P  
Sbjct: 309 DKVSKNLEVQWLAQGTIYSDVIES----AKSCDATQVIKSHHNVGGLPEKLNLKLLEPLR 364

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+      + 
Sbjct: 365 FLFKDEVRALGKVLGLP 381


>gi|89100241|ref|ZP_01173108.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus sp. NRRL B-14911]
 gi|89085091|gb|EAR64225.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus sp. NRRL B-14911]
          Length = 517

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 207 NFIEIETEKIRQAVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 260

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 261 RKG---EAESVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 317

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      +     + D +E            + +        +  D+   +  P    
Sbjct: 318 AAKLEGIEFLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 371

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I+
Sbjct: 372 FKDEVRALGTELGIA 386


>gi|325479285|gb|EGC82381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 367

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 42/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK---FSAISVDHCLRETAKD 68
               ++V +SGG DS    + L     D      +++            VD+       +
Sbjct: 5   KDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDDTDENGVCTAEVDY-------E 57

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISE 112
           +   VS+   ++ I +  ++++     +  T  +   ++ R             +    +
Sbjct: 58  DAVAVSN---QIGIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLD 114

Query: 113 HAKTINATLIMTAH-TFDDQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            AK++ A  + T H    D+   ETV +R   +  ++   LS +    + D    +  P 
Sbjct: 115 FAKSLGADYVATGHYARADRSNGETVMLRGVDNNKDQTYFLSQLSQEQIKD----VLFPV 170

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    + N++
Sbjct: 171 GEFEKKEVREIAHKYNLA 188


>gi|310775002|gb|ADP21914.1| cell cycle protein [Listonella anguillarum]
          Length = 244

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 56/151 (37%), Gaps = 12/151 (7%)

Query: 200 ERVRVRRFVRDI---DLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
           +R  +R  +  +       ++  + +   L  +    +  L+ + +        ++S   
Sbjct: 1   DRNFIRHHITPVLTQRWPHIHQAVARSATLCAQQQVLLEELLQEAMQEAKMPDGSLSITA 60

Query: 257 LNIDSTLLFY-LLRVSAAICGGQISLPGYRSMERVMLFLKS---GKRGCVSIGRVVIDRR 312
           L+  S L  Y LLR+  A  G    +P    +  +   + S        + +G+  + R 
Sbjct: 61  LSHRSELARYQLLRMWLAQLG--EPMPTQEHLAMIWQQVASARIDANPRLKLGQSELRRF 118

Query: 313 ANFLWI---TRAVRNLPTLILYPEETTVWDG 340
              L+     + + +   +I+  +  T+ DG
Sbjct: 119 DQKLYCIQTYQDISDWQAMIVPDQSLTLPDG 149


>gi|209518734|ref|ZP_03267550.1| GMP synthase, large subunit [Burkholderia sp. H160]
 gi|209500848|gb|EEA00888.1| GMP synthase, large subunit [Burkholderia sp. H160]
          Length = 527

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H+++ +SGG DS      LH  + D      + + + VDH  LR     E  
Sbjct: 216 IREQVGNEHVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     L +   V+    S+           P+        E      +E  K  +A
Sbjct: 267 QVMALFADHLGVK--VIHVDASEAFLGKLAGVTDPEAKRKIIGAEFVEVFQAEAGKLTDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+     +   A + +        +   LNL +  P     ++++R 
Sbjct: 325 KWLAQGTIYPDVIES---AGKGKKAAQTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRE 381

Query: 180 FLLQRNISW 188
             ++  +  
Sbjct: 382 LGVKLGLPH 390


>gi|254469025|ref|ZP_05082431.1| GMP synthase [beta proteobacterium KB13]
 gi|207087835|gb|EDZ65118.1| GMP synthase [beta proteobacterium KB13]
          Length = 496

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 31/190 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ V+  H+++ +SGG DS      LH  + D      + + I VDH  LR   KDE  
Sbjct: 192 IKNQVHDEHVILGLSGGVDSSVAAALLHRAIGD------QLTCIFVDHGLLR---KDEAT 242

Query: 72  YVSDVCSR-LRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V  +    L +   V+    +K           P+       R        E  K  NA
Sbjct: 243 KVLSLFKENLGVK--VIHVDATKKFMDDLKGIDDPEEKRKIIGRNFVEVFQDESKKITNA 300

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRCRREDI 177
             +     + D +E+          +KG  +        +   L+L +  P     ++++
Sbjct: 301 KWLAQGTIYPDVIES-----AGGKTKKGHNIKSHHNVGGLPETLHLKLLEPLRELFKDEV 355

Query: 178 RSFLLQRNIS 187
           R   +   + 
Sbjct: 356 RKLGVALGLP 365


>gi|171778579|ref|ZP_02919706.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282802|gb|EDT48226.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 406

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 39/196 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 38  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 89

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 90  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 149

Query: 115 KTINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L      +  P  
Sbjct: 150 MTLGADYVATGHYAQVSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLEK----VMFPLG 205

Query: 171 RCRREDIRSFLLQRNI 186
             ++ ++R    +  +
Sbjct: 206 HLKKPEVRKIAERAGL 221


>gi|42518314|ref|NP_964244.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus johnsonii NCC 533]
 gi|50400372|sp|Q74LF7|GUAA_LACJO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|41582598|gb|AAS08210.1| GMP synthase [Lactobacillus johnsonii NCC 533]
          Length = 517

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 216 IRKKVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 269

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 270 --QALNKDLGVNIIRVNAQERFLNKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 328 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPEDMHFELIEPLRKLFKDEVRELGE 381

Query: 183 QRNISW 188
           +  I  
Sbjct: 382 KLGIPH 387


>gi|150397798|ref|YP_001328265.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium medicae WSM419]
 gi|205828972|sp|A6UCQ0|MNMA_SINMW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150029313|gb|ABR61430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sinorhizobium medicae WSM419]
          Length = 398

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  + I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+     +  G   +      D +            
Sbjct: 126 KELGADALATGH---------YIRSRPSPMPRYPGQRALYRPADADRDQSYFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R+   +  +
Sbjct: 177 IDYLRFPLGGLPKSETRALAEEMGL 201


>gi|33595928|ref|NP_883571.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bordetella parapertussis 12822]
 gi|44887944|sp|Q7WAV6|GUAA_BORPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33566007|emb|CAE36561.1| GMP synthase [glutamine-hydrolyzing] [Bordetella parapertussis]
          Length = 530

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 64/193 (33%), Gaps = 24/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +R  V    +++ +SGG DS+     +H  + D      + + + VDH  LR  
Sbjct: 214 EAVAR-IREQVGSDEVILGLSGGVDSLVAAALIHRAIGD------QLTCVFVDHGLLR-- 264

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
             DE + V       + +    V             + P+       RE       E  K
Sbjct: 265 -LDEGKQVMQTFAENMGVKIVHVDATSQFMGKLTGVADPEAKRKIIGREFVEVFQDEAGK 323

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+      +      +        +   LNL +  P     ++
Sbjct: 324 LQGAKWLAQGTIYPDVIES---AGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFKD 380

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 381 EVRELGVALGLPP 393


>gi|150015222|ref|YP_001307476.1| GMP synthase [Clostridium beijerinckii NCIMB 8052]
 gi|259647752|sp|A6LQ90|GUAA_CLOB8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149901687|gb|ABR32520.1| GMP synthase, large subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 510

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 20/184 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ LV    +L A+SGG DS    + +H  +          + I VDH  LR+   D V 
Sbjct: 209 IKELVGDKKVLCALSGGVDSSVAAMIVHKAIGH------NLTCIFVDHGLLRKDEGDTVE 262

Query: 72  YVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            V      + I    V+ +        S P+T       E       E  K      ++ 
Sbjct: 263 RVFKKEFDMNIKRVNVADRFLGKLAGVSDPETKRKIIGEEFIRVFEEEAKKVGQIDYLVQ 322

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
              + D +E              +        +  D+   +  P     ++++R+   + 
Sbjct: 323 GTIYPDIVE------SGTKTSATIKSHHNVGGLPEDMQFELIEPLRELFKDEVRAVGEEL 376

Query: 185 NISW 188
            I  
Sbjct: 377 GIPH 380


>gi|323465786|gb|ADX69473.1| Bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus helveticus H10]
          Length = 525

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 224 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 277

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 278 --QALNKDLGVNIIRVNAQKRFLDKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVNFL 335

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 336 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELGE 389

Query: 183 QRNISW 188
           +  I  
Sbjct: 390 RLGIPH 395


>gi|299783606|gb|ADJ41604.1| GMP synthase (Glutamine-hydrolyzing) [Lactobacillus fermentum CECT
           5716]
          Length = 517

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +   V    +++ +SGG DS    + +H  + D      + + I VDH  LR+   D V 
Sbjct: 216 ISQTVGDKKVILGLSGGVDSSVTAVLIHKAIGD------QLTCIFVDHGLLRKNEADSVM 269

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
               + + L +    V   +         S P+       +E       E  K  +A  +
Sbjct: 270 --KALSADLGVNIIKVDAADRFLGKLKGISDPEQKRKTIGKEFVAVFDEEAKKMKDADFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +   +   +  P     +++ R    
Sbjct: 328 AQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEKMGFKLIEPLRSLFKDETRQLGE 381

Query: 183 QRNISW 188
           +  I  
Sbjct: 382 KLGIPH 387


>gi|161506835|ref|YP_001576789.1| GMP synthase [Lactobacillus helveticus DPC 4571]
 gi|160347824|gb|ABX26498.1| GMP synthase [Lactobacillus helveticus DPC 4571]
          Length = 494

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 193 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 246

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 247 --QALNKDLGVNIIRVNAQKRFLDKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVNFL 304

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 305 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELGE 358

Query: 183 QRNISW 188
           +  I  
Sbjct: 359 RLGIPH 364


>gi|259502394|ref|ZP_05745296.1| GMP synthase [Lactobacillus antri DSM 16041]
 gi|259169656|gb|EEW54151.1| GMP synthase [Lactobacillus antri DSM 16041]
          Length = 517

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  + D      + + I VDH  LR+    E  
Sbjct: 216 IRKEVGDKKVILGLSGGVDSSVTAVLIHKAIGD------QLTCIFVDHGLLRKN---EAD 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NA 119
            V   +   L +  ++V    +    G +A      + R         + +E AK I +A
Sbjct: 267 QVMKALNKDLGV--NIVKVDAADRFLGKLAGVTDPEQKRKIIGKEFIEVFNEEAKKIPDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +   L   +  P  +  +++ R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRKLFKDETRE 378

Query: 180 FLLQRNISW 188
              +  I  
Sbjct: 379 LGEKLGIPH 387


>gi|188997646|ref|YP_001931897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932713|gb|ACD67343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 352

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 62/194 (31%), Gaps = 35/194 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----------AISVDHCLRETAKDE 69
             I+V +SGG DS      L     +     +KF+                     +  +
Sbjct: 2   KKIVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCELDTQVCC--------SDKD 53

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEH 113
           +     V   L I H V++WK+   +                   +   +E +  L +++
Sbjct: 54  ILDAKKVAEFLEIPHYVINWKDIFEKKVINYFIEVYQSGLTPNPCSICNKEVKTGLFAKY 113

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K++    + T H     ++      +R   +       M   +  ++   ++ P     
Sbjct: 114 IKSLGFDYLATGHYIRTDIQDGIKVLKRGIDKNKDQSYFMA-LVEKEVVDTLTFPLGNLT 172

Query: 174 REDIRSFLLQRNIS 187
           +E++R    +  I 
Sbjct: 173 KEEVRKIAQENRIP 186


>gi|94987032|ref|YP_594965.1| GMP synthase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731281|emb|CAJ54644.1| GMP synthase-Glutamine amidotransferase domain [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 513

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 75/194 (38%), Gaps = 22/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE +    +  +   +++ A+SGG DS  + + L+  +  R         I VD+  L
Sbjct: 201 SFIEKIITQAQKTIGDGNVVCALSGGVDSTVVALILNQAIGKR------LHCIFVDNGLL 254

Query: 63  RETAKDEV-RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHA 114
           RE  KDEV  Y+ +    L +       +  K   G+     E R         +  E A
Sbjct: 255 REGEKDEVISYLREH-FDLNLIFVQAQDRFLKQLEGIQDP-EEKRKIIGHTFIDVFDEEA 312

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + I     +     + D +E++  R      +    + G+ +     ++L +  P     
Sbjct: 313 RAIGKVDFLAQGTLYSDIIESIPHRGSSVVIKSHHNVGGLPEK----MSLKLIEPLKELF 368

Query: 174 REDIRSFLLQRNIS 187
           ++++R   ++  + 
Sbjct: 369 KDEVRKVAVELGLP 382


>gi|15613824|ref|NP_242127.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
           halodurans C-125]
 gi|14195281|sp|Q9KDF2|MNMA_BACHD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|10173877|dbj|BAB04980.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus
           halodurans C-125]
          Length = 371

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 36/192 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 10  RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYQDV 61

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYALISEHAKTI 117
             VC++L IA+  V+++           L    A R          E ++     HA T+
Sbjct: 62  VQVCNQLGIAYYAVNFEKEYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHALTL 121

Query: 118 NATLIMTAHTFDDQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  + T H    Q++ V    +  R           +       L+  +  P     ++
Sbjct: 122 GADYVATGHYA--QVKNVDGQYQLIRGKDPNKDQTYFLNALSQQQLS-RVMFPLGHLEKK 178

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  ++
Sbjct: 179 EVRAIAERAGLA 190


>gi|323526462|ref|YP_004228615.1| GMP synthase large subunit [Burkholderia sp. CCGE1001]
 gi|323383464|gb|ADX55555.1| GMP synthase, large subunit [Burkholderia sp. CCGE1001]
          Length = 527

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H+++ +SGG DS      LH  + D      + + + VDH  LR     E  
Sbjct: 216 IREQVGNEHVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINA 119
            V +     L +   V+    S            P+        E      +E  K  +A
Sbjct: 267 QVMATFADHLGVK--VIHVDASDVFLRKLEGVTDPEAKRKIIGAEFVEVFQTEAGKLTDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+     +   A + +        +   LNL +  P     ++++R 
Sbjct: 325 KWLAQGTIYPDVIES---AGKGKKATQTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRE 381

Query: 180 FLLQRNISW 188
             ++  +  
Sbjct: 382 LGVKLGLPP 390


>gi|157150902|ref|YP_001449344.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|189040513|sp|A8AU84|MNMA_STRGC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157075696|gb|ABV10379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 373

 Score = 56.5 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H      DQ     +   R      ++   LS +    L         P
Sbjct: 117 LTLGADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++RS   +  ++
Sbjct: 171 LGHLEKPEVRSIAERAGLA 189


>gi|147920648|ref|YP_685553.1| hypothetical protein RCIX867 [uncultured methanogenic archaeon
           RC-I]
 gi|110620949|emb|CAJ36227.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 276

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 80/251 (31%), Gaps = 46/251 (18%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHC 61
           L+P   +    R L     +LVA SGG DS  LL  A+ ++ +D+       S I+  H 
Sbjct: 8   LTPEAKLFKLQRILRELGSVLVAFSGGVDSTLLLKCAVDTLGADKVAAATAISEIT--H- 64

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAK 115
            RE   D     + +   L + H ++     +               +  R+A +     
Sbjct: 65  -REDVDD----AAMIAKDLGVRHIIIRSDEVENADFVANTPERCYICKRGRFARLVHLKD 119

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCR 173
            +    I+     DD+ +                  G      +     I  P       
Sbjct: 120 ELGLDYIVDGSNKDDEAD---------------YRPGEKAMKEFG----IRSPLREAGLY 160

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRFERVRV-------RRFVRDIDLHALYLKMKKFQDL 226
           + +IR       +   + PS         R+       R  +R +D     L    F  L
Sbjct: 161 KSEIRELSRLMGLPTWDRPSRACLA---SRIPYGAQITRDRLRMVDEAERALHCFGFGQL 217

Query: 227 RVKVNNAVAML 237
           RV+ +  VA +
Sbjct: 218 RVRYHGDVARI 228


>gi|167757683|ref|ZP_02429810.1| hypothetical protein CLOSCI_00012 [Clostridium scindens ATCC 35704]
 gi|167664703|gb|EDS08833.1| hypothetical protein CLOSCI_00012 [Clostridium scindens ATCC 35704]
          Length = 278

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 53/182 (29%), Gaps = 36/182 (19%)

Query: 22  ILVAVSGGSDSMGLLIAL--HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++VA SGG DS  LL      ++ S+R    +          +  +   + +    V   
Sbjct: 23  VIVAFSGGVDSSLLLKLACEAALKSNRKVYAVFLHTA-----MHPS--GDAQSAKRVAEE 75

Query: 80  LRIAHSVVSWKN---SKPQTGLMAAAREARYALISEH---AKTINATLIMTAHTFDDQLE 133
           +     ++       ++            +  L  +    A  + A  IM     DD   
Sbjct: 76  IGADFRILKIDELETAQIADNPTDRCYRCKRHLFEQIQGEAAKLQAGWIMEGTNADD--- 132

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIRSFLLQRNISWCED 191
                           L      I     L I  P       +E++R    +  IS  + 
Sbjct: 133 ----------------LKAYRPGIRAIRELGIISPLADACITKEEVRLLAKEYGISVAKK 176

Query: 192 PS 193
           PS
Sbjct: 177 PS 178


>gi|281202538|gb|EFA76740.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Polysphondylium pallidum PN500]
          Length = 465

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 66/200 (33%), Gaps = 48/200 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               I V +SGG DS      L            K   + +        KDE+ Y     
Sbjct: 69  KKPEICVGLSGGVDSAVTAYLLKK-------QGFKVQCVYI---KSWDEKDELGYCTGEK 118

Query: 74  -----SDVCSRLRIAHS----VVSWKNSKPQTGLMAAA------------REARYALISE 112
                 DV +RL++       V  + N    + L   +            RE ++ +  E
Sbjct: 119 DYSDAQDVANRLQLPIYHADFVKEYWNRVFNSFLEEYSQGYTPNPDVFCNREIKFNVFYE 178

Query: 113 HAKTINATLIMTAH----TFDDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWI 165
           +AK+I A +I T H     +DD+LE+   R  R       +   L       LY      
Sbjct: 179 YAKSIGADMIATGHYSRLQYDDELESA--RLLRGVDPNKDQSYFLCMTEGRQLYRS---- 232

Query: 166 SRPFLRCRREDIRSFLLQRN 185
             P     + DI++   Q  
Sbjct: 233 LFPIGDYVKTDIKALANQLG 252


>gi|260752318|ref|YP_003225211.1| GMP synthase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551681|gb|ACV74627.1| GMP synthase, large subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 526

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 66/186 (35%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R+    E  
Sbjct: 222 IRKQVGDGRVICGLSGGVDSSVTAVLVHEAIGD------QLTCVFVDHGLMRQG---EAE 272

Query: 72  YVSDVCSRL-RIAHSVVSWKNS--KPQTGLMAAAREARY------ALISEHAKTI-NATL 121
            V  +      I    V+ ++       G+     + ++       +  E AK I  A  
Sbjct: 273 QVVSLFREHYGIKLVHVNAEDRFLAGLKGVTDPETKRKFIGKTFIEIFEEEAKKIGGADF 332

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 333 LAQGTLYPDVIESV---SFLGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRDLG 389

Query: 182 LQRNIS 187
            +  + 
Sbjct: 390 RELGMP 395


>gi|307729357|ref|YP_003906581.1| GMP synthase large subunit [Burkholderia sp. CCGE1003]
 gi|307583892|gb|ADN57290.1| GMP synthase, large subunit [Burkholderia sp. CCGE1003]
          Length = 527

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H+++ +SGG DS      LH  + D      + + + VDH  LR     E  
Sbjct: 216 IREQVGNEHVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINA 119
            V +     L +   V+    S            P+        E      +E  K  +A
Sbjct: 267 QVMATFADHLGVK--VIHVDASDVFLRKLEGVTDPEAKRKIIGAEFVEVFQTEAGKLTDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+     +   A + +        +   LNL +  P     ++++R 
Sbjct: 325 KWLAQGTIYPDVIES---AGKGKKATQTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRE 381

Query: 180 FLLQRNISW 188
             ++  +  
Sbjct: 382 LGVKLGLPP 390


>gi|56552163|ref|YP_163002.1| GMP synthase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|81354934|sp|Q5NN19|GUAA_ZYMMO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56543737|gb|AAV89891.1| GMP synthase, large subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 526

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 66/186 (35%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R+    E  
Sbjct: 222 IRKQVGDGRVICGLSGGVDSSVTAVLVHEAIGD------QLTCVFVDHGLMRQG---EAE 272

Query: 72  YVSDVCSRL-RIAHSVVSWKNS--KPQTGLMAAAREARY------ALISEHAKTI-NATL 121
            V  +      I    V+ ++       G+     + ++       +  E AK I  A  
Sbjct: 273 QVVSLFREHYGIKLVHVNAEDRFLAGLKGVTDPETKRKFIGKTFIEIFEEEAKKIGGADF 332

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 333 LAQGTLYPDVIESV---SFLGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRDLG 389

Query: 182 LQRNIS 187
            +  + 
Sbjct: 390 RELGMP 395


>gi|329666624|gb|AEB92572.1| GMP synthase [Lactobacillus johnsonii DPC 6026]
          Length = 517

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 216 IREKVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 269

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 270 --QALNKDLGVNIIRVNAQERFLNKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 328 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPEDMHFELIEPLRKLFKDEVRELGE 381

Query: 183 QRNISW 188
           +  I  
Sbjct: 382 KLGIPH 387


>gi|311111279|ref|ZP_07712676.1| GMP synthase [Lactobacillus gasseri MV-22]
 gi|311066433|gb|EFQ46773.1| GMP synthase [Lactobacillus gasseri MV-22]
          Length = 504

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 203 IREKVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 256

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 257 --QALNKDLGVNIIRVNAQKRFLDKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVDFL 314

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 315 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPEDMHFELIEPLRKLFKDEVRELGE 368

Query: 183 QRNISW 188
           +  I  
Sbjct: 369 KLGIPH 374


>gi|300362442|ref|ZP_07058618.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus gasseri JV-V03]
 gi|300353433|gb|EFJ69305.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus gasseri JV-V03]
          Length = 517

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 216 IREKVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 269

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 270 --QALNKDLGVNIIRVNAQKRFLGKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 328 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPEDMHFELIEPLRKLFKDEVRELGE 381

Query: 183 QRNISW 188
           +  I  
Sbjct: 382 KLGIPH 387


>gi|116628906|ref|YP_814078.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus gasseri ATCC 33323]
 gi|238852873|ref|ZP_04643278.1| GMP synthase [Lactobacillus gasseri 202-4]
 gi|282852575|ref|ZP_06261917.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus gasseri 224-1]
 gi|122274096|sp|Q046I2|GUAA_LACGA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116094488|gb|ABJ59640.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus gasseri ATCC
           33323]
 gi|238834567|gb|EEQ26799.1| GMP synthase [Lactobacillus gasseri 202-4]
 gi|282556317|gb|EFB61937.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus gasseri 224-1]
          Length = 517

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 216 IREKVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 269

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 270 --QALNKDLGVNIIRVNAQKRFLDKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 328 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPEDMHFELIEPLRKLFKDEVRELGE 381

Query: 183 QRNISW 188
           +  I  
Sbjct: 382 KLGIPH 387


>gi|306834574|ref|ZP_07467687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus bovis ATCC 700338]
 gi|304423376|gb|EFM26529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus bovis ATCC 700338]
          Length = 373

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 37/196 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            T+ A  + T H    Q+   E   +   R           +   +  +    +  P   
Sbjct: 117 MTLGADYVATGHYA--QVSRDEDGIVHMLRGADNNKDQTYFLSQ-LSQEQLQKVMFPLGH 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  ++
Sbjct: 174 LEKPEVRKIAERAGLA 189


>gi|304440238|ref|ZP_07400128.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371287|gb|EFM24903.1| PP-loop family protein [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 271

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 34/195 (17%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M ++  +  +     L     I VA SGG DS  L++A   +L   +   I   +     
Sbjct: 1   MDINIEKKYKKLEDLLKSYGRIAVAFSGGVDSSFLVVAAKKILGKENILAINLIS----- 55

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY---ALIS---EHA 114
            ++  +  E  Y  +   +  I    +       +  +  +     Y   ++ S   E +
Sbjct: 56  SMQPES--EENYAKEFADKYDIDLIRIPADEYSIEGFVENSKDRCYYCKHSIFSKVIEIS 113

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRC 172
           +     ++      DD              +   G+  + +       L +  P   +  
Sbjct: 114 EKNGFKIVADGTNADD------------EGDYRPGMKALKE-------LNVKSPLKEVEL 154

Query: 173 RREDIRSFLLQRNIS 187
            + +IR+ L + N+ 
Sbjct: 155 TKSEIRTLLKEMNVE 169


>gi|283798480|ref|ZP_06347633.1| PP-loop family protein [Clostridium sp. M62/1]
 gi|291073739|gb|EFE11103.1| PP-loop family protein [Clostridium sp. M62/1]
          Length = 280

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 32/174 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG DS  LL       +          A++ D  L      ++     V   L 
Sbjct: 21  VCLAFSGGVDSSLLLKLACDSAAK---YHTTVWAVTFDTMLHP--ACDMENARRVARELN 75

Query: 82  IAHSVVSWKNSKPQT---GLMAAAREARYALISEH---AKTINATLIMTAHTFDDQLETV 135
            +H V++    + +      +      +  L S+    A+    + I+     DD     
Sbjct: 76  ASHVVLTVDELEQEELRRNPVDRCYLCKRRLFSDLKKFAEEKGCSTILDGTNEDD----- 130

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP--FLRCRREDIRSFLLQRNIS 187
                         L      I     L I  P       +++++    +  IS
Sbjct: 131 --------------LHVYRPGIRALRELGIVSPLALCGMTKQEVKELAARLGIS 170


>gi|116628661|ref|YP_821280.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
           LMD-9]
 gi|122266745|sp|Q03I88|MNMA_STRTD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116101938|gb|ABJ67084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus thermophilus LMD-9]
          Length = 373

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H    Q+   E   +   R      ++   LS +    L         P
Sbjct: 117 MTLGADYVATGHYA--QVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKAMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ ++R    +  ++
Sbjct: 171 LGHLQKSEVREIAERAGLA 189


>gi|14591705|ref|NP_143793.1| hypothetical protein PH1968 [Pyrococcus horikoshii OT3]
 gi|3258412|dbj|BAA31095.1| 273aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 273

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 17/112 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSRLR 81
           +VA SGG DS+  L         +    I   A+ VDH  +   A    + V+     L 
Sbjct: 56  IVAYSGGKDSIVALYL------AKEKYSIDVEAVMVDHGFIAPQAIKNAKNVAKY---LD 106

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +  +++    S                       ++ ++A       ++T H
Sbjct: 107 VPLTIIKRDYSDIFREALLKAKSPCRKCSRRTMEILRKYALKKGYRYMITGH 158


>gi|302348658|ref|YP_003816296.1| GMP synthase (glutamine-hydrolyzing) [Acidilobus saccharovorans
           345-15]
 gi|302329070|gb|ADL19265.1| GMP synthase (glutamine-hydrolyzing) [Acidilobus saccharovorans
           345-15]
          Length = 517

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 27/194 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             +E VR     +      +VAVSGG DS    +     L DR+        + ++H  L
Sbjct: 210 KLVEQVR---SQIPREDKAIVAVSGGVDSTTAAVIAKRALGDRA------VVVFINHGLL 260

Query: 63  RETAKDEVRYVSDVCSRLRI-AHSVVSWK--------NSKPQTGLMAAAREARYALISEH 113
           RE    E   V      L +    + +           + P+   +   +          
Sbjct: 261 REG---EAEEVLSALKSLGLNPIYIDASDRFLRALKGVTDPEQKRLVVGKVFAEVFKEVA 317

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
               +   ++   T+ D +E+       +     +        +  DL L +  P     
Sbjct: 318 TSDSSIRWLVQGTTYPDVIES-----GAEAGADRIKSHHNVGGLPRDLGLRVIEPLRYLY 372

Query: 174 REDIRSFLLQRNIS 187
           ++++R   L   I 
Sbjct: 373 KDEVRRLALSLGIP 386


>gi|240140914|ref|YP_002965394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens AM1]
 gi|254563424|ref|YP_003070519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens DM4]
 gi|240010891|gb|ACS42117.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens AM1]
 gi|254270702|emb|CAX26706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 410

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 49/211 (23%)

Query: 15  SLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET--- 65
            L  P H   ++VA+SGG DS  +   L     D     ++      DH     R+    
Sbjct: 30  DLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRKGACC 85

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYAL 109
           A  ++     V   L I H V+ +++   ++ +   A                R  ++  
Sbjct: 86  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 145

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------Y 159
           +   A+ + A  + T H            + R   E G  L    D              
Sbjct: 146 LLGLARELGAEALATGHYV----------ASRARPEGGRALYRALDPARDQSYFLYATTP 195

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           +   ++  P     +++ R+   +  ++  +
Sbjct: 196 EQLAYLRFPLGERPKDETRALARELGLAVAD 226


>gi|226226536|ref|YP_002760642.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27]
 gi|226089727|dbj|BAH38172.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27]
          Length = 381

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 40/198 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC------LRETAKDEV 70
              A +LVA+SGG DS      L     D     +K       H        R     + 
Sbjct: 6   PKGARVLVAMSGGVDSSVAAAILMEHGCDVVGVTMKL------HGDGADVPDRPCCSLDA 59

Query: 71  RY-VSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAREA------------RYALISEH 113
                 VC +L I H V +  +      L       AR              ++  +   
Sbjct: 60  TSDARRVCEKLGIPHYVTNLVDHFSHDVLDDFVQEYARGRTPIPCVRCNTFTKFRDLLHK 119

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A  I+A  + T H         Q   V +R      ++   L G+   +L      +  P
Sbjct: 120 ADAIDAPWLATGHYARIGHRHGQA--VMVRGLDTSKDQSYFLWGIDRPVL----DRLVLP 173

Query: 169 FLRCRREDIRSFLLQRNI 186
                + + R    +  +
Sbjct: 174 IGAQTKAETRDIARRFGL 191


>gi|83591056|ref|YP_431065.1| ExsB [Moorella thermoacetica ATCC 39073]
 gi|83573970|gb|ABC20522.1| preQ(0) biosynthesis protein QueC [Moorella thermoacetica ATCC
           39073]
          Length = 192

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 33/188 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +LV +SGG DS  L+                   + V +  +  A+ E +    + +  
Sbjct: 3   PVLVLLSGGIDSAALVHY-------YRSKNTSVYGLHVQYG-QPVAEREAQAAKAIAAHY 54

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD----DQLETVY 136
            I   +   +    + G     R A + LI+    +     +           D  +   
Sbjct: 55  GIDLRIAHIQPPLARKGEEYLCRNAIFVLIACANLSPGINRVALGIHSGTIYYDCSQGFM 114

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
              QR       G             + +  PFLR  + ++  +     +         D
Sbjct: 115 ADMQRLLDGYFSGA------------VTVEAPFLRWSKLEVYQYCTSHGVPV-------D 155

Query: 197 DRF--ERV 202
             +  ER 
Sbjct: 156 LTYSCERN 163


>gi|320449214|ref|YP_004201310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus scotoductus SA-01]
 gi|320149383|gb|ADW20761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus scotoductus SA-01]
          Length = 372

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 40/198 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVD--HCLR-------ET 65
            +LVA+SGG DS      L     +      R + +      ++D  H  R         
Sbjct: 3   KVLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPEEPPRP-TLDIPHKGRAWESCCTPE 61

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAARE----AR------YAL 109
           A  E R V+++   L I   ++ ++ +  +  +       A  R     AR      +  
Sbjct: 62  AAYEARRVAEI---LDIPFYLLDYRETFEEEIIQPFLKDYAQGRTPNPCARCNTFVKFGA 118

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + + A+ +    + T H    + E+  +R      ++   L G     L      +  P 
Sbjct: 119 LLKQAQRLGLDYVATGHYVRREGES-LLRGIDPLKDQSYFLWGTPKEALP----HLLFPV 173

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R+   +  + 
Sbjct: 174 GGMTKAEVRALAERAGLP 191


>gi|18310476|ref|NP_562410.1| PP-loop family protein [Clostridium perfringens str. 13]
 gi|18145156|dbj|BAB81200.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 277

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 8/121 (6%)

Query: 71  RYVSDVCSRLRIAHSV-----VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             + D C  L I   +         +   +          R   +   AK +    +   
Sbjct: 33  ELLEDNCKYLDIPVHIYDSGIFQVVDKIAKDYPCYMCARMRRGSLYGKAKELGCNKLALG 92

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H F+D +ET  +            L  +         + + RP      + I+ ++ +  
Sbjct: 93  HHFNDVIETTMLNVL-YAGNFKTMLPKLKAANF--DGIELIRPLYYIEEKYIKRWIQRAG 149

Query: 186 I 186
           I
Sbjct: 150 I 150


>gi|34557924|ref|NP_907739.1| GMP synthase [Wolinella succinogenes DSM 1740]
 gi|44887990|sp|Q7M8K2|GUAA_WOLSU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|34483642|emb|CAE10639.1| GMP SYNTHASE [Wolinella succinogenes]
          Length = 521

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L AVSGG DS  +   L+  + ++         + VDH  LR   ++ V 
Sbjct: 218 IQERVKSGKVLCAVSGGVDSSVVAALLYRAIGEKLIP------VFVDHGLLRAGEREAVE 271

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREAR----YALISEHAKTI-NATLI 122
                   L +    V     +             R+        +    AK       +
Sbjct: 272 --KMFKENLHVPLITVDASEIFLGKLKGVSDPETKRKIIGETFIEVFDVEAKKHDGIQYL 329

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ D + ++    +  P     ++++R+   
Sbjct: 330 AQGTLYPDVIESVSVKGPSKTIKSHHNVGGLPDWMTFE----LIEPLRELFKDEVRALGA 385

Query: 183 QRNIS 187
           +  + 
Sbjct: 386 ELGMP 390


>gi|302392812|ref|YP_003828632.1| GMP synthase (glutamine-hydrolyzing) [Acetohalobium arabaticum DSM
           5501]
 gi|302204889|gb|ADL13567.1| GMP synthase (glutamine-hydrolyzing) [Acetohalobium arabaticum DSM
           5501]
          Length = 516

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 27/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V  +H++  +SGG DS      +H  + D      + + I VDH  LR+   +EV+
Sbjct: 214 IKEEVGDSHVICGLSGGVDSSVAAALVHEAIGD------QLTCIFVDHGLLRKNEAEEVK 267

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                     +    V  +            P+        E       E  K  +   +
Sbjct: 268 --QTFGQEFDMNLISVDAQQRFFAKLEGVDDPEEKRKIIGNEFIEVFDEEAGKLGDIEYL 325

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           +    + D +E+          +    +        +  D+NL +  P     ++++R  
Sbjct: 326 VQGTIYSDVIES-------GGTDDSATIKSHHNVGGLPEDMNLKLIEPLRNIFKDEVREV 378

Query: 181 LLQRNIS 187
             +  I 
Sbjct: 379 GEELGIP 385


>gi|167754372|ref|ZP_02426499.1| hypothetical protein ALIPUT_02666 [Alistipes putredinis DSM 17216]
 gi|167658997|gb|EDS03127.1| hypothetical protein ALIPUT_02666 [Alistipes putredinis DSM 17216]
          Length = 218

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 39/186 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +I   A++ D+      K E    +  C +L I H 
Sbjct: 8   VSGGMDSITLLH--------EKVEEIAL-AVTFDYG-SNHNKREAECAARHCQQLGIEHI 57

Query: 86  VVS--WKNSKPQTGLMAAAR---EARYALISE------------------HAKTINATLI 122
           ++   +     ++ L+  A    E  Y   +                    A++   + +
Sbjct: 58  IIPLAFIGQYFKSSLLEGADAVPEGHYEAENMKSTVVPFRNGIMLSVACGLAESRKLSKV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + A+   D          R      M  +    T +    + I  P+   R+ DI     
Sbjct: 118 LIANHGGDHA---IYPDCRAGFVHSMSEAMRHGTYI---GVQIDAPYTGIRKSDIARIGK 171

Query: 183 QRNISW 188
           +  + +
Sbjct: 172 RLGLDY 177


>gi|156086538|ref|XP_001610678.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154797931|gb|EDO07110.1| hypothetical protein BBOV_IV007560 [Babesia bovis]
          Length = 409

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%)

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHA 215
           Y  ++ + RPF++  +  +  FL   N ++ ED SN   ++ R R+R+ V    L+A
Sbjct: 6   YSRDIVVIRPFIQLTKSALGLFLEGVNGTFHEDSSNNTAKYTRNRIRQSVLPELLNA 62


>gi|225175850|ref|ZP_03729843.1| ExsB family protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168774|gb|EEG77575.1| ExsB family protein [Dethiobacter alkaliphilus AHT 1]
          Length = 266

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 43/182 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----DEVRYVSD 75
             +LVA SGG DS  LL      L D+        A++        ++    +E      
Sbjct: 19  GSVLVAFSGGVDSSVLLAMASGTLGDK------VLAVT------AASETYLSEEQEVAER 66

Query: 76  VCSRLRIAHSVVSWKN---SKPQTGLMAAAREARYALIS---EHAKTINATLIMTAHTFD 129
           + ++L++   V+  +       Q          ++ L     E AK      +      D
Sbjct: 67  LAAKLQVPLQVIETEELAIPAFQDNPPERCYYCKHELFGKLTEVAKANGLQYVADGSNAD 126

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
           D                G    GM           +  P       +ED+R    + N+ 
Sbjct: 127 DV---------------GDWRPGMKAAAELG----VRSPLKEAGFTKEDVRRLARELNLE 167

Query: 188 WC 189
             
Sbjct: 168 NW 169


>gi|170692169|ref|ZP_02883332.1| GMP synthase, large subunit [Burkholderia graminis C4D1M]
 gi|170142599|gb|EDT10764.1| GMP synthase, large subunit [Burkholderia graminis C4D1M]
          Length = 527

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H+++ +SGG DS      LH  + D      + + + VDH  LR     E  
Sbjct: 216 IREQVGNEHVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINA 119
            V +     L +   V+    S            P+        E      +E  K  +A
Sbjct: 267 QVMATFADHLGVK--VIHVDASDVFLRKLEGVTDPEAKRKIIGAEFVEVFQTEAGKLTDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+     +   A + +        +   LNL +  P     ++++R 
Sbjct: 325 KWLAQGTIYPDVIES---AGKGKKATQTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRE 381

Query: 180 FLLQRNISW 188
             ++  +  
Sbjct: 382 LGVKLGLPP 390


>gi|312796277|ref|YP_004029199.1| GMP synthase [glutamine-hydrolyzing] [Burkholderia rhizoxinica HKI
           454]
 gi|312168052|emb|CBW75055.1| GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) [Burkholderia
           rhizoxinica HKI 454]
          Length = 527

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 67/201 (33%), Gaps = 30/201 (14%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E+V   +R+ V    +++ +SGG DS      LH  + D      + + + VDH
Sbjct: 205 MGHYIAEAVEQ-IRAQVGNERVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDH 257

Query: 61  C-LRETAKDEVRYV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYAL 109
             LR     E   V       L +    V   ++          P+        E     
Sbjct: 258 GLLRLN---EAEQVMETFGRHLGVKVIHVDASDAFMSKLAGVTDPEHKRKIIGAEFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWIS 166
            +E  K  +A  +     + D +E+          +KG            +   LNL + 
Sbjct: 315 QNEARKLTDAKWLAQGTIYPDVIESA------GKGKKGAHTIKSHHNVGGLPETLNLKLL 368

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     ++++R   ++  + 
Sbjct: 369 EPLRELFKDEVRELGVKLGLP 389


>gi|196251089|ref|ZP_03149769.1| GMP synthase, large subunit [Geobacillus sp. G11MC16]
 gi|196209383|gb|EDY04162.1| GMP synthase, large subunit [Geobacillus sp. G11MC16]
          Length = 590

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E VR  +R  V    +L A+SGG DS    + +H  + D      + + I VDH  LR+ 
Sbjct: 284 EQVRR-IREQVGGKKVLCALSGGVDSSVAAVLVHRAIGD------QLTCIFVDHGLLRKG 336

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
              E   V      + ++    V  K          S P+        E  Y    E AK
Sbjct: 337 ---EAESVMKTFREQFQMNVIKVDAKERFLAKLKGVSDPEQKRKIIGNEFIYVFDDEAAK 393

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 ++    + D +E            + +        +  D+   +  P     ++
Sbjct: 394 LEGIEFLVQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMKFELIEPLNTLFKD 447

Query: 176 DIRSFLLQRNIS 187
           ++R+   Q  I 
Sbjct: 448 EVRALGTQLGIP 459


>gi|104773463|ref|YP_618443.1| GMP synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116513450|ref|YP_812356.1| GMP synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122275780|sp|Q04CA4|GUAA_LACDB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123378530|sp|Q1GBU7|GUAA_LACDA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|103422544|emb|CAI97137.1| GMP synthase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|116092765|gb|ABJ57918.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125089|gb|ADY84419.1| GMP synthase [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 517

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 68/188 (36%), Gaps = 28/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A++++ +SGG DS      LH  +        + +AI VDH  LR+   DEV 
Sbjct: 216 IREEVGNANVILGISGGVDSSVTATLLHKAI------GSQLTAIFVDHGLLRKNESDEVM 269

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NAT 120
             + +   L +  ++V           +A      + R         + ++ AK I +A 
Sbjct: 270 --AALKEGLGV--NIVRVDAKDRFMSKLAGVTDPEKKRKIIGNEFVQVFNDEAKKIKDAK 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E              +        +  D+   +  P  +  ++++R  
Sbjct: 326 FLAQGTLYTDVIE------SGTDTAHTIKSHHNVGGLPEDMQFKLIEPLRQLFKDEVRVL 379

Query: 181 LLQRNISW 188
             +  +  
Sbjct: 380 GEKLGLPH 387


>gi|327191998|gb|EGE58979.1| GMP synthase (glutamine-hydrolyzing) protein [Rhizobium etli
           CNPAF512]
          Length = 520

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE  
Sbjct: 216 IRKQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEAA 266

Query: 72  YVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      L + H   S +        S P+T      R        E  +   A  
Sbjct: 267 NVVAMFREHYNLHLLHVDASDRFIGELEGVSDPETKRKIIGRLFIETFEEEAKRLGGADF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + + +  P     ++++R+  
Sbjct: 327 LGQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  + 
Sbjct: 384 RELGLP 389


>gi|281355523|ref|ZP_06242017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Victivallis vadensis ATCC BAA-548]
 gi|281318403|gb|EFB02423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Victivallis vadensis ATCC BAA-548]
          Length = 358

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 45/199 (22%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD-------RSFGKIKFSAISVDHCLRETAKDEVR 71
              ++VA+SGG DS    +       +             +FSA      L   +K++  
Sbjct: 2   KEKVIVALSGGVDSSVAAVLAQQAGCEVIGVTLRLKHPDPEFSAA----QL-CASKNDEA 56

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR--------EARYAL----ISEHAK 115
            V  +C++L I H  +     ++    +      AR        E  Y +    + E A+
Sbjct: 57  AVESICAKLGIEHHYLELFPEFECKVLRPAAQEYARGRTPNPCCECNYRIKFGKLVEFAR 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAE----KGMGLSGMCDTILYDLNLWISR---- 167
           ++ A  ++T H           +           +G  L       LY L+  I      
Sbjct: 117 SVGAAKVLTGHYA---------KLSEHGGVYELRRGDDLKKDQSYFLYRLDQAILSMVRF 167

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + ++R    +  +
Sbjct: 168 PVGAMDKGEVRRIAAEYGL 186


>gi|27382106|ref|NP_773635.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium japonicum USDA
           110]
 gi|81735060|sp|Q89ES7|MNMA_BRAJA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27355276|dbj|BAC52260.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bradyrhizobium japonicum USDA 110]
          Length = 393

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 36/205 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L +   D     ++      DH     R+    A
Sbjct: 7   LEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLY----DHGAATHRKGACCA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++    DV ++L I H V+ +++   ++ +   A                R  ++  +
Sbjct: 63  GQDIHDARDVAAKLGIPHYVLDYEDRFRESVIDNFADSYALGETPVPCIECNRSIKFRDL 122

Query: 111 SEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            + A+ + A  + T H       DD       R     A+     S        +   ++
Sbjct: 123 LKTARELGAQALATGHYVASRRLDDGS-----RVLVCAADADRDQSYFLFATTQEQLDYL 177

Query: 166 SRPFLRCRREDIRSFLLQRNISWCE 190
             P     + + R    +  ++  +
Sbjct: 178 RFPLGDMTKPETRELARRFGLAVAD 202


>gi|251789549|ref|YP_003004270.1| tRNA-specific 2-thiouridylase MnmA [Dickeya zeae Ech1591]
 gi|247538170|gb|ACT06791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya zeae Ech1591]
          Length = 372

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 9   KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW----------EEDDDTEYCSAATDL 58

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E R                  A +   
Sbjct: 59  ADAQAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFA 118

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 119 AEDLGADYIATGH 131


>gi|85860332|ref|YP_462534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
 gi|123517346|sp|Q2LWA6|MNMA1_SYNAS RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|85723423|gb|ABC78366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophus aciditrophicus SB]
          Length = 372

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 41/211 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-------KDE 69
           +    +L+A+SGG DS    + L            + + +++   +RE         ++ 
Sbjct: 18  ILKKRVLLAISGGVDSSVAALLLKE-------EGYEVAGVTMCLGVREEENKVRCCGREA 70

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RYALISEH--- 113
           +     VC  L I H V+ +        +    RE              RY         
Sbjct: 71  IEDARGVCEILGIPHYVLDYAPLLETCVIDKFVREYRLGRTPNPCIDCNRYLKFGHLLDS 130

Query: 114 AKTINATLIMTAHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+T+    + T H    ++E      +  +++    ++   L      I       I  P
Sbjct: 131 ARTMGFDYLATGHYA--KIERKESRWILKKAKDLVKDQTYFLY----PIPVAALEHILFP 184

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                ++++R    Q  +   E P + D  F
Sbjct: 185 LADRTKDEVREIARQALLPIAEKPESQDLCF 215


>gi|254171778|ref|ZP_04878454.1| GMP synthase, C-terminal domain [Thermococcus sp. AM4]
 gi|214033674|gb|EEB74500.1| GMP synthase, C-terminal domain [Thermococcus sp. AM4]
          Length = 307

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 100/304 (32%), Gaps = 50/304 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V     ++A+SGG DS    I  H  + DR        A+ V+    R+    E  
Sbjct: 13  IRETVGDGKAIIALSGGVDSSTAAILAHKAIGDR------LHAVFVNTGFMRKG---EPE 63

Query: 72  Y-VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYAL---ISEHAKTINATLI 122
           + V        +    V      +K  K  T      +           E AK INA  +
Sbjct: 64  FVVKTFRDEFGLNLHYVDASERFFKALKGVTDPEEKRKIIGRVFIEVFEEIAKEINADFL 123

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +      D +E       R   +    + G+ + +    NL +  P     ++++R    
Sbjct: 124 IQGTIAPDWIE------SRGKIKSHHNVGGLPERL----NLKLIEPLRDLYKDEVRELAK 173

Query: 183 QRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           +  +         +  + R         VRV   + ++    + +  +    +  ++  A
Sbjct: 174 ELGLP--------EKIYNRMPFPGPGLAVRV---LGEVTPEKIAIVREANAIVEEEIEKA 222

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLF 293
                  +  +     + +  DI     T+   ++     +    +++P +  ++R+   
Sbjct: 223 GLKPWQAFAVLLGVKTVGVQGDIRAYKETIAVRVVESLDGMTANAMNVP-FDVLQRIAFR 281

Query: 294 LKSG 297
           + S 
Sbjct: 282 ITSE 285


>gi|121534431|ref|ZP_01666254.1| ExsB family protein [Thermosinus carboxydivorans Nor1]
 gi|121306924|gb|EAX47843.1| ExsB family protein [Thermosinus carboxydivorans Nor1]
          Length = 274

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 40/185 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYVSDVCS 78
            H +VA SGG DS  L  A   VL ++    +  +A+        T+ + E    S +  
Sbjct: 18  GHAVVAFSGGVDSTFLAAAAKRVLGEKV---VAVTAV------SPTSPQREQEDASRLAQ 68

Query: 79  RLRIAHSVV--------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            L IAH ++         +  + P+       ++ R+  +   A+  N   ++ A   DD
Sbjct: 69  VLEIAHFILPSGELDKQEFTANNPER--CYFCKKERFGALVAWAQERNFHWVIEASNADD 126

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISW 188
                 +   R                       +  P L     + +IR+   +  +  
Sbjct: 127 ------LNDYR------------PGLRALRELAQVRSPLLEAGMTKAEIRTLSREWGLPT 168

Query: 189 CEDPS 193
            + PS
Sbjct: 169 WDKPS 173


>gi|83591327|ref|YP_431336.1| hypothetical protein Moth_2511 [Moorella thermoacetica ATCC 39073]
 gi|83574241|gb|ABC20793.1| conserved hypothetical protein [Moorella thermoacetica ATCC 39073]
          Length = 271

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 44/199 (22%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
             +    ++L     ILVA SGG DS  LL    +         +K  A++        +
Sbjct: 8   AKLEQLKKNLTELESILVAYSGGVDSSLLLKVAST-------TPVKVLAVT------AAS 54

Query: 67  K----DEVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREARYALIS---EHAKT 116
                 E+   + +   L + H V++     N +            +  L +   E A+ 
Sbjct: 55  STYPQAEIEAATRLARELGVQHMVINTNEMDNPEFCANPPERCYHCKKELFATLQELARE 114

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRR 174
                I+     DD          R     G   +             +  P       +
Sbjct: 115 HGLKAIVDGANADD----------RSDFRPGSQAA---------REYGVKSPLQEAGLTK 155

Query: 175 EDIRSFLLQRNISWCEDPS 193
           +DIR       +   + PS
Sbjct: 156 DDIRQLARHLGLPNWDKPS 174


>gi|87307052|ref|ZP_01089198.1| Predicted PP-loop superfamily ATPase [Blastopirellula marina DSM
           3645]
 gi|87290425|gb|EAQ82313.1| Predicted PP-loop superfamily ATPase [Blastopirellula marina DSM
           3645]
          Length = 219

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 55/191 (28%), Gaps = 40/191 (20%)

Query: 23  LVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +VAV SGG DS  LL  L     D         AIS+++  R     E+ Y   +C ++ 
Sbjct: 4   VVAVVSGGMDSATLLYHLIDAGHD-------VRAISINYGQRHV--KELDYARQLCDKVG 54

Query: 82  IAHSVVSWKNSKP------QTGLMAAAREARYALISE------------------HAKTI 117
           +   V       P       +G      E  YA  +                    A + 
Sbjct: 55  VPQIVADLSAINPLFGANSLSGREIEIPEGHYAEENMKLTVVPNRNMILLSVSIAWAISQ 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +       D           D   +          +     + + RPF+   + DI
Sbjct: 115 ECVAVAYGAHSGDHA------IYPDCRPEFAAAMDQAAKLCDWSAVELWRPFVDIDKGDI 168

Query: 178 RSFLLQRNISW 188
                +  + +
Sbjct: 169 AQRGSELGVPY 179


>gi|308270746|emb|CBX27356.1| hypothetical protein N47_H21780 [uncultured Desulfobacterium sp.]
          Length = 275

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 47/189 (24%), Gaps = 35/189 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E     V  L     + +A SGG DS  LL   H VL  +       S +          
Sbjct: 9   EKKERLVSILKSYNSLAIAFSGGVDSSFLLALAHQVLGKKVIAITAVSPVH--------P 60

Query: 67  KDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAK---TINAT 120
             E  +      +  I H ++       ++            +  L     +        
Sbjct: 61  ARETEFAKSFAKKRNIKHKIIKSDEMDIAEFTANTRNRCYICKKNLFPRLLECAVKSGIK 120

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIR 178
            +      DD                   L       +    L I+ P +     ++ IR
Sbjct: 121 DLAHGANMDD-------------------LDDFRPGFMAASELKIAAPLIDAGFSKQQIR 161

Query: 179 SFLLQRNIS 187
                 N+ 
Sbjct: 162 ELSKNMNLE 170


>gi|289168790|ref|YP_003447059.1| tRNA methyl transferase [Streptococcus mitis B6]
 gi|288908357|emb|CBJ23199.1| tRNA methyl transferase [Streptococcus mitis B6]
          Length = 373

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      DD      +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDDDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRKLAEKAGLA 189


>gi|84490100|ref|YP_448332.1| GMP synthase subunit B [Methanosphaera stadtmanae DSM 3091]
 gi|84373419|gb|ABC57689.1| GMP synthase [glutamine hydrolyzing], subunit B [Methanosphaera
           stadtmanae DSM 3091]
          Length = 308

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 32/194 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     ++  V    +++A+SGG DS        S+L+ ++ G  +  A+ VDH  L
Sbjct: 6   KFIEESIKSIKEEVKDEKVIIALSGGVDSSV-----ASILASKAIGN-QLEAVFVDHGLL 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH 113
           R+    E + V D     R+   +V+ ++           P+        +    +    
Sbjct: 60  RKN---EAKEVEDTFKD-RLNFKLVNAQDEFIEALDGVTDPEKKREIIGHKF-IEVFERE 114

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK   A  ++      D +E+           KG   S    T+   L L I  P     
Sbjct: 115 AKKSGAKYLLQGTIAPDWIES-----------KGNIKSHHNLTLPEGLVLKIIEPLRELY 163

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 164 KDEVREVGTALELP 177


>gi|99081216|ref|YP_613370.1| GMP synthase [Ruegeria sp. TM1040]
 gi|123077651|sp|Q1GGV8|GUAA_SILST RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|99037496|gb|ABF64108.1| GMP synthase (glutamine-hydrolyzing) [Ruegeria sp. TM1040]
          Length = 520

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS      +H  + D      + + + VDH L R+    E  
Sbjct: 216 IREQVGDKKVICALSGGVDSSVAAALIHEAIGD------QLTCVFVDHGLLRKN---EAE 266

Query: 72  YVSDVCS---RLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
            V  +      L++ H+  +  +             R+    L  +  +        A  
Sbjct: 267 EVVGMFRDHMNLQVIHADETELFLGELEGQSDPETKRKIIGKLFIDVFQKYADQIEGAEF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 327 LAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  + 
Sbjct: 384 RELGLP 389


>gi|227894459|ref|ZP_04012264.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus ultunensis DSM 16047]
 gi|227863618|gb|EEJ71039.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus ultunensis DSM 16047]
          Length = 516

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 215 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+  +           P+       +E       E  K  +   +
Sbjct: 269 --KALNKDLGVNIIRVNAADRFLSKLKGVTDPEKKRKIIGKEFIEVFNEEAKKLKDVDFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 327 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELGE 380

Query: 183 QRNISW 188
           +  I  
Sbjct: 381 KLGIPH 386


>gi|86751223|ref|YP_487719.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           HaA2]
 gi|86574251|gb|ABD08808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris HaA2]
          Length = 402

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 65/206 (31%), Gaps = 46/206 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++VA+SGG DS      L S   D     ++      DH     R+    A  ++
Sbjct: 15  PQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLY----DHGAATHRKGACCAGQDI 70

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
               DV  R+ I H V+ +++   ++ + + A                R  ++  +   A
Sbjct: 71  HDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRDLLATA 130

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNLW 164
           + + A+ + T H              R  A+    L    D              +   +
Sbjct: 131 RELGASALATGHYVS----------SRRLADGSRALICAADRDRDQSYFLFATTREQLDF 180

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCE 190
           +  P     +   R    Q  +S  +
Sbjct: 181 LRFPLGDMTKPQTRDLARQFGLSVAD 206


>gi|320160878|ref|YP_004174102.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerolinea thermophila UNI-1]
 gi|319994731|dbj|BAJ63502.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerolinea thermophila UNI-1]
          Length = 361

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 35/197 (17%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV--- 73
           +    ++VA+SGG DS      L           ++           E  K++       
Sbjct: 3   IRDETVVVAMSGGVDSSVAAALLVEQGYRVIGMMLRL--------WSEEGKEDQNRCCTP 54

Query: 74  ------SDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALIS 111
                   V ++L I    V  +    +      L   A            R  R+ ++ 
Sbjct: 55  DAMALARRVAAKLGIPFYAVDVREKFKEVVVSHFLEGYASGITPNPCLKCNRYIRWGVLH 114

Query: 112 EHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           E+A+++ AT   T H     +LE+  ++  R    +    S +   +  +       P  
Sbjct: 115 EYAQSLGATWFATGHYARLRRLESGEVQLLRGVDVEKDQ-SYVLSVLPQEQLRHTFFPVG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  + 
Sbjct: 174 EYHKPEVRELARRFGLP 190


>gi|319746158|gb|EFV98430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae ATCC 13813]
          Length = 397

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 32  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 83

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 84  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 143

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D       +R   +  ++   LS +    L         P    +
Sbjct: 144 GADYVATGHYAQVTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKT----LFPLGHLQ 199

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 200 KPEVRRIAEEAGLA 213


>gi|256848294|ref|ZP_05553737.1| GMP synthase domain-containing protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714892|gb|EEU29870.1| GMP synthase domain-containing protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 517

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  + D      + + I VDH  LR+   D+V 
Sbjct: 216 IREEVGDKKVILGLSGGVDSSVTAVLLHKAIGD------QLTCIFVDHGLLRKNEADQVM 269

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V   +           P+       +E       E  K  +A  +
Sbjct: 270 NA--LSRDLGVNIIKVDASDRFLGKLKGVTDPEKKRKIIGKEFVEVFNEEAKKMDDAEFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +   L   +  P     +++ R    
Sbjct: 328 AQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRSLFKDETRELGE 381

Query: 183 QRNISW 188
           +  I  
Sbjct: 382 KLGIPH 387


>gi|228477995|ref|ZP_04062606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus salivarius SK126]
 gi|228250175|gb|EEK09428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus salivarius SK126]
          Length = 373

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H    Q+   E   +   R      ++   LS +    L         P
Sbjct: 117 MTLGADYVATGHYA--QVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ ++R    +  ++
Sbjct: 171 LGHLQKPEVREIAERAGLA 189


>gi|77412720|ref|ZP_00788963.1| tRNA methyl transferase [Streptococcus agalactiae CJB111]
 gi|77161229|gb|EAO72297.1| tRNA methyl transferase [Streptococcus agalactiae CJB111]
          Length = 204

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D       +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KPEVRRIAEEAGLA 189


>gi|77412483|ref|ZP_00788784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae CJB111]
 gi|77161459|gb|EAO72469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus agalactiae CJB111]
          Length = 373

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    T D       +R   +  ++   LS +    L         P    +
Sbjct: 120 GADYVATGHYAQVTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKT----LFPLGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KPEVRRIAEEAGLA 189


>gi|218289827|ref|ZP_03494027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240118|gb|EED07303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 365

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 42/219 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++ +  +  A +        A+ +   V
Sbjct: 4   RVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDETDENGACT--------AEQDFEDV 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISEHAKTI 117
             VC ++ I +  V+++    +        E R                   +   A  +
Sbjct: 56  RRVCEQIGIPYYGVNFEREYEERVFQHFLEEFRRGRTPNPDVLCNREIKFKELLACALDL 115

Query: 118 NATLIMTAHTFD-DQLETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H     QLE   +   R      ++   L  +    L         P     
Sbjct: 116 GADYLATGHYAQVRQLEDGSVALVRGRDKNKDQTYFLHMLTQAPLRRAMF----PIGHLT 171

Query: 174 REDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
           + ++R       +     +D +      ER   R F++ 
Sbjct: 172 KPEVRQIARDHGLHVAQKKDSTGICFIGERNF-RAFLQQ 209


>gi|228471015|ref|ZP_04055859.1| ExsB protein [Porphyromonas uenonis 60-3]
 gi|228307235|gb|EEK16258.1| ExsB protein [Porphyromonas uenonis 60-3]
          Length = 217

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 39/189 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A+SGG DS  LL           + +    A+  D+   +    E+     +C  L I
Sbjct: 5   LIALSGGVDSTTLLY---------EYREEIACAVGFDYG-SKHNARELAAAKAICRELEI 54

Query: 83  AHSVVSWK-----------NSKPQTGLMAAARE--------AR----YALISEHAKTINA 119
            + ++               S  +  L   + E         R     ++++  A++ + 
Sbjct: 55  PYLIIPLAFIGEYFRSDLLLSGGEMQLGDYSEENMSSTVVPFRNGIMLSVLAGLAESRDL 114

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++ A+ F D          R+   K MG +    T      + +  P+    + +I +
Sbjct: 115 QQVLIANHFGDHA---IYPDCRESFVKPMGEAITAGTS---NGVKLVAPYTALTKAEIVA 168

Query: 180 FLLQRNISW 188
              +  + +
Sbjct: 169 RGTRLGVPY 177


>gi|189485394|ref|YP_001956335.1| GMP synthase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287353|dbj|BAG13874.1| GMP synthase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 509

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 68/192 (35%), Gaps = 23/192 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E V+  +   V  + +L A+SGG DS    + L+  +        +   + VDH L++ 
Sbjct: 200 VEEVKR-IHKQVGKSKVLCALSGGVDSSVAAVMLYKAIGK------QLICVYVDHGLQK- 251

Query: 66  AKDEVRYVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALIS----EHAK 115
              E   V             +VS K       K  T      +   +  I     E  K
Sbjct: 252 -LGETERVRKVFGRMFGKNLIIVSAKKIFLSKLKGITDPEQKRKIIGHTFIEVFDGEVKK 310

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 ++    + D +E+V ++  +   +    + G+ +     + + +  P     ++
Sbjct: 311 LKGINFLLQGTIYSDVIESVSIKGAKSPIKSHHNVGGLPEK----MKMKLVEPLRFLFKD 366

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 367 EVRVLGKELGVP 378


>gi|159044136|ref|YP_001532930.1| GMP synthase [Dinoroseobacter shibae DFL 12]
 gi|226738439|sp|A8LKW5|GUAA_DINSH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157911896|gb|ABV93329.1| GMP synthase [Dinoroseobacter shibae DFL 12]
          Length = 520

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 65/185 (35%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++ A+SGG DS    + +H  + +      + + + VDH  LR+    EV 
Sbjct: 216 IRAQVGDGKVICALSGGVDSSVAAVLIHEAIGE------QLTCVFVDHGLLRKNEAQEV- 268

Query: 72  YVSDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAR---EARYALISEHAKTI-NATLI 122
            V+       +       + +       Q+      +   +    +    AK I  A  +
Sbjct: 269 -VTMFREHYNLPLIHADETELFLSALDGQSDPETKRKIIGKLFIDVFEAKAKEIGGADFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + + +  P     ++++R+   
Sbjct: 328 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGMKLVEPLRELFKDEVRALGH 384

Query: 183 QRNIS 187
           +  + 
Sbjct: 385 ELGLP 389


>gi|147678963|ref|YP_001213178.1| PP family ATPase [Pelotomaculum thermopropionicum SI]
 gi|146275060|dbj|BAF60809.1| ATP-utilizing enzymes of the PP-loop superfamily [Pelotomaculum
           thermopropionicum SI]
          Length = 359

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 56/194 (28%), Gaps = 45/194 (23%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +      L     +LVA SGG+DS  LL     VL D      K  A++        A
Sbjct: 93  EKLEVLKEILKSCGSVLVAFSGGADSTLLLKVARDVLGD------KVLAVT-------AA 139

Query: 67  KD-----EVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAK 115
            +     E     ++   +   H V + K  K               ++  Y  + + A+
Sbjct: 140 SEIYPPGEAAEAGELARAIGAEHIVFTAKGLKSAAFRNNPPDRCYHCKKEIYTELLKLAR 199

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCR 173
                 +      DD  +                       I   + L +  P       
Sbjct: 200 ERGIKCVADGVNADDAAD-------------------YRPGIRAGIELGVKAPLKEAGLT 240

Query: 174 REDIRSFLLQRNIS 187
           +++I +   Q  + 
Sbjct: 241 KQEIHALSRQLGLP 254


>gi|160871950|ref|ZP_02062082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsiella grylli]
 gi|159120749|gb|EDP46087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsiella grylli]
          Length = 361

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 54/192 (28%), Gaps = 34/192 (17%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
               ++V +SGG DS    + L           + +      +            +A  +
Sbjct: 2   KKKRVMVGLSGGVDSSVAALLLKEQGYQVEGLFMKNWEEDDTEVYC---------SASTD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEH 113
           +     +C +L I    +++            +A  R  R             +    ++
Sbjct: 53  IADAQAICDKLAIPLRTINFAAEYWNAVFMHFLAEYRRGRTPNPDILCNKEIKFKAFLQY 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A    A  I T H      +    +  +   +       +     + L   +  P  R  
Sbjct: 113 ALHTGADFIATGHYAHKSFQNNMYQLLQCADKNKDQTYFLYTLGQHPLAHTLF-PLARLT 171

Query: 174 REDIRSFLLQRN 185
           + ++R+    + 
Sbjct: 172 KSEVRAIAQSKG 183


>gi|51473501|ref|YP_067258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia typhi str. Wilmington]
 gi|73920129|sp|Q68X66|MNMA_RICTY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|51459813|gb|AAU03776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia typhi str. Wilmington]
          Length = 358

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 71/210 (33%), Gaps = 43/210 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           A I+VA+SGG DS  +   LH          ++      D+ +         A  ++   
Sbjct: 2   ATIVVAMSGGVDSSAVAAMLHEQGHHVIGITLQLY----DYGIAVGKKNACCAGKDIYDA 57

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAAREA-RYALISEHAKTI 117
             V ++L I H V+ ++N   ++ +                    +  ++  +   AK +
Sbjct: 58  KMVANKLGIPHYVLDYENKFKESVIDNFVNSYLHGETPLPCVQCNKLVKFRDLINTAKEL 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRD--YAEKGMGLSGMCD------TILYDLNLWISRPF 169
            A  + T H         Y+R       AE   GL    D      TI  +   ++  P 
Sbjct: 118 GADKLATGH---------YVRKINGYNGAELHTGLDAAKDQSYFLFTITREQLEYLIFPL 168

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               + + R    +  +   + P + D  F
Sbjct: 169 GGFTKYETRKLASKFGLDVADKPDSQDICF 198


>gi|85710077|ref|ZP_01041142.1| GMP synthase [Erythrobacter sp. NAP1]
 gi|85688787|gb|EAQ28791.1| GMP synthase [Erythrobacter sp. NAP1]
          Length = 524

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH L R     E  
Sbjct: 220 IRAQVGEGRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVYVDHGLMRLN---ETE 270

Query: 72  YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEHAKTI-NATL 121
            V  +      I    V  + +           E +               AK +  A  
Sbjct: 271 QVVSLFRDHYNIPLIAVDAEETFLAGLAGVTDPEKKRKFIGGAFIDLFEAEAKKVGGADF 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 331 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMELVEPLRELFKDEVRELG 387

Query: 182 LQRNIS 187
            +  + 
Sbjct: 388 RELGLP 393


>gi|255036423|ref|YP_003087044.1| tRNA-specific 2-thiouridylase MnmA [Dyadobacter fermentans DSM
           18053]
 gi|254949179|gb|ACT93879.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Dyadobacter fermentans DSM 18053]
          Length = 368

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 77/241 (31%), Gaps = 59/241 (24%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD-------------RSFGKIKFSAISVDHCL 62
           +     ILVA+SGG DS    + LH    +                 K +    S+D   
Sbjct: 1   MSKHGRILVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTWDYASSGGTKKETGCCSLD--- 57

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EAR 106
              + ++     ++   L   H ++  +           TG     R            +
Sbjct: 58  ---SINDA---RNIAVELGFPHYILDIRAEFGDYVIDHFTGEYLEGRTPNPCVLCNTHIK 111

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-I 165
           +  +   A  ++   I T H  + Q       + R Y  KG+        +L+ ++   +
Sbjct: 112 WDALLRRADRLDCEFIATGHYANMQ-----FNNGRHYVSKGIDAWKDQSYVLWGVSQESL 166

Query: 166 SR---PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDIDL 213
           +R   P     + +IR    +R      D  N  + +E         R  ++R +  ++ 
Sbjct: 167 ARTKLPLGYLHKAEIREMARERG---FIDLVNKSESYEICFVPDNDYRGFLKRRIPGLEA 223

Query: 214 H 214
            
Sbjct: 224 E 224


>gi|86138375|ref|ZP_01056949.1| GMP synthase [Roseobacter sp. MED193]
 gi|85824900|gb|EAQ45101.1| GMP synthase [Roseobacter sp. MED193]
          Length = 538

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 21/191 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E     +R  V    ++  +SGG DS    + LH  + D      + + + VDH  LR+ 
Sbjct: 228 EQAIEAIREQVGDKKVICGLSGGVDSSVTAVLLHEAIGD------QLTCVFVDHGLLRKG 281

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTI---- 117
             +EV  V+       +       ++               R+    L  +  +      
Sbjct: 282 EAEEV--VTMFRDNYNMQFIHADEQDLFLGELEGQSDPETKRKIIGKLFIDVFQKHANTI 339

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 340 DGAEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 396

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 397 VRALGRELGLP 407


>gi|78356066|ref|YP_387515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|123552952|sp|Q313S6|MNMA_DESDG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78218471|gb|ABB37820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 356

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 65/202 (32%), Gaps = 52/202 (25%)

Query: 21  HILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-----VRYVS 74
           HI VAVSGG+DS+  LL  L            + +A+   H L      E      + + 
Sbjct: 2   HIAVAVSGGTDSLFALLQVL--------EAGHQVTALH-AHFLSPHDTPETTAHNTQAIE 52

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTIN 118
             C  L     V     +  +  +     A R+ R             + L+++ A+ + 
Sbjct: 53  KACRALGADFHVEDLSAAFRKHVIEPFIDAYRQGRTPNPCARCNASMKFGLLADTARKLG 112

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----------- 167
           A  I T H           R Q D    G  +S            +              
Sbjct: 113 AQAIATGHYA---------RLQPDLPRPGNTVSLWRGDDPAKDQSYFLSLVPQHRLACAV 163

Query: 168 -PFLRCRREDIRSFLLQRNISW 188
            P    R++D+R+ L QR I  
Sbjct: 164 FPLGGWRKQDVRAHLKQRGIVP 185


>gi|259415755|ref|ZP_05739675.1| GMP synthase [Silicibacter sp. TrichCH4B]
 gi|259347194|gb|EEW58971.1| GMP synthase [Silicibacter sp. TrichCH4B]
          Length = 520

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS      +H  + D      + + + VDH L R+    E  
Sbjct: 216 IREQVGDKKVICALSGGVDSSVAAALIHEAIGD------QLTCVFVDHGLLRKN---EAE 266

Query: 72  YVSDVCS---RLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
            V  +      L++ H+  +  +             R+    L  +  +        A  
Sbjct: 267 EVVGMFRDHMNLQVIHADETELFLGELEGQSDPETKRKIIGKLFIDVFQKYADQIEGAEF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 327 LAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  + 
Sbjct: 384 RELGLP 389


>gi|240102817|ref|YP_002959126.1| GMP synthase subunit B [Thermococcus gammatolerans EJ3]
 gi|239910371|gb|ACS33262.1| GMP synthase [glutamine-hydrolyzing] pyrophosphatase subunit (C
           terminal domain) (guaA_C) [Thermococcus gammatolerans
           EJ3]
          Length = 311

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 103/316 (32%), Gaps = 50/316 (15%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M+   I      +R  V     ++A+SGG DS    +  H  + DR        A+ V+ 
Sbjct: 5   MWKDFIREKVEEIRETVGDGKAIIALSGGVDSSTAAVLAHKAIGDR------LHAVFVNT 58

Query: 61  CL-RETAKDEVRY-VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYAL---I 110
              R+    E  + V        +    V      +K  K  T      +          
Sbjct: 59  GFMRKG---EPEFVVKTFRDEFGLNLHYVDASERFFKALKGVTDPEEKRKIIGRVFIEVF 115

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E AK INA  ++      D +E       +   +    + G+ + +    NL +  P  
Sbjct: 116 EEIAKEINADFLIQGTIAPDWIE------SKGKIKSHHNVGGLPERL----NLKLIEPLR 165

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMK 221
              ++++R    +  +         +  + R         VRV   + ++    + +  +
Sbjct: 166 DLYKDEVRELAKELGLP--------EKIYNRMPFPGPGLAVRV---LGEVTPEKIAIVRE 214

Query: 222 KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281
               +  ++  A       +  +     + +  DI     T+   ++     +    +++
Sbjct: 215 ANAIVEEEIEKAGLRPWQAFAVLLGVKTVGVQGDIRAYKETIAVRVVESLDGMTANAMNV 274

Query: 282 PGYRSMERVMLFLKSG 297
           P +  ++R+   + S 
Sbjct: 275 P-FEVLQRIAFRITSE 289


>gi|218663753|ref|ZP_03519683.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhizobium etli IE4771]
          Length = 348

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE  
Sbjct: 44  IRKQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEAA 94

Query: 72  YVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      L + H   S +        S P+T      R        E  K   A  
Sbjct: 95  NVVAMFREHYNLHLLHVDASDRFIGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGADF 154

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + + +  P     ++++R+  
Sbjct: 155 LGQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRALG 211

Query: 182 LQRNIS 187
            +  + 
Sbjct: 212 RELGLP 217


>gi|170727050|ref|YP_001761076.1| tRNA-specific 2-thiouridylase MnmA [Shewanella woodyi ATCC 51908]
 gi|205816913|sp|B1KID0|MNMA_SHEWM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169812397|gb|ACA86981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella woodyi ATCC 51908]
          Length = 377

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 55/194 (28%), Gaps = 39/194 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A D+++ 
Sbjct: 17  KKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMK--------NWEEDDTDEYCAAADDLKD 68

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    V++ +           A  +  R               A +     
Sbjct: 69  AQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADD 128

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            ++A  I   H     DD  ++  +R      ++   L  +    +         P    
Sbjct: 129 ILDADYIAMGHYVRRSDDSGQSQMLRGIDGNKDQSYFLYTLSHEQVSRS----LFPVGEL 184

Query: 173 RREDIRSFLLQRNI 186
            + ++R    +  +
Sbjct: 185 EKSEVREIAKEMGL 198


>gi|47459275|ref|YP_016137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma mobile 163K]
 gi|81614195|sp|Q6KHK4|MNMA_MYCMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|47458604|gb|AAT27926.1| tRNA-methyltransferase (5-methylaminomethyl-2-thiouridylate)
           [Mycoplasma mobile 163K]
          Length = 370

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 74/230 (32%), Gaps = 59/230 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-----------------VDHCL 62
           + I+VA+SGG DS      L    +       +  A+                  ++  +
Sbjct: 2   SKIVVALSGGVDSSVTAFILKYQQNH------EVIAVFMRNWDSFANNDILGNEDINQDI 55

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR----------Y-- 107
               KD       + S+L I    V +      +  T L+   R+ R          Y  
Sbjct: 56  CPQEKDWED-AKKIASQLNIPIYRVDFVKEYYDEVFTYLIEEYRQGRTPNPDIFCNKYIK 114

Query: 108 --ALISEHAKTINATLIMTAHTFDDQLE-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
               I    K  N   I T H    ++E ++  R++    ++   LS +      D    
Sbjct: 115 FGKFIEYVEKNFNPDFIATGHYA--KVENSLLYRAKDRNKDQSYFLSQLSS----DQLKK 168

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCE--DPS--------NTDDRFERVRV 204
           I  P     ++ IR    + N+   +  D +        N D +F +  +
Sbjct: 169 IIFPLKDLTKDVIRKIAAENNLVTAQKKDSTGICFIGERNFD-KFLQNYI 217


>gi|310643522|ref|YP_003948280.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus polymyxa SC2]
 gi|309248472|gb|ADO58039.1| tRNA-specific 2-thiouridylase mnmA [Paenibacillus polymyxa SC2]
          Length = 373

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 57/195 (29%), Gaps = 38/195 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           +   ++V +SGG DS    + L         +         +F         R TA+++ 
Sbjct: 6   HETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFG--------RCTAEEDA 57

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGL-----MAAA-----------REARYALISEHA 114
             V  VC ++ I +  V+++                A           RE ++      A
Sbjct: 58  EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             + A  + T H      E       R      ++   L+ +    L         P   
Sbjct: 118 LDLGADYVATGHYARVVEEDGRFTLLRGVDSNKDQTYFLNALSQAQLSRTMF----PIGH 173

Query: 172 CRREDIRSFLLQRNI 186
             + ++R       +
Sbjct: 174 LPKPEVRRIAEAAGL 188


>gi|182418877|ref|ZP_02950134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum 5521]
 gi|237667388|ref|ZP_04527372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377160|gb|EDT74728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum 5521]
 gi|237655736|gb|EEP53292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 360

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 58/210 (27%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISV 58
           +     +L+ +SGG DS      L                      +R  G    SA+  
Sbjct: 1   MSSKKKVLIGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEFEEREGGCCSLSAV-- 58

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR--------- 103
                    ++ R V   C +L I   V+++++   +  +          R         
Sbjct: 59  ---------EDARRV---CDKLGIPFYVLNFRDYFKEKVIEPFIQEYMDGRTPNPCIECN 106

Query: 104 -EARYALISEHAKTINATLIMTAHTFDDQLET-----VYMRSQRDYAEKGMGLSGMCDTI 157
              ++  +   A+ I A  + T H    ++E      + +RS  D  ++   L       
Sbjct: 107 KHLKFDELLRRARGIGADYVATGHYA--KIEERDGRYLLIRSDDDSKDQTYALYNFTQ-- 162

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             D       P     +  IR    +  ++
Sbjct: 163 --DQLAHTLMPCGAYEKTKIREIAKEIGLA 190


>gi|196249022|ref|ZP_03147721.1| ExsB family protein [Geobacillus sp. G11MC16]
 gi|196211251|gb|EDY06011.1| ExsB family protein [Geobacillus sp. G11MC16]
          Length = 274

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 92/275 (33%), Gaps = 54/275 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +     V  L    ++LVA SGG DS  LL      L D+    +  +A+         +
Sbjct: 7   QKREQLVHLLKEMGNVLVAFSGGVDSTFLLAMAKEALGDQV---LAVTAV---------S 54

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKT 116
                 EV++ + +  ++ + H  +           K         +   Y  + E A+ 
Sbjct: 55  ETFPAREVQHATKLAEQIGVKHIKIQIHELENEDFVKNDLHRCFHCKHNLYTHLGELARK 114

Query: 117 INATL-IMTAHTFDDQLETVY-MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                 ++     DD  E    +++ R    +    S + +  LY   + I        +
Sbjct: 115 YGHMYTVVDGSNMDDLGEYRPGLQAARQLGVR----SPLQEVQLYKKEIRI------LSK 164

Query: 175 E-DIRSF------LLQRNISW--------CE--DPSNT---DDRFERVRVRRFVRDIDLH 214
           E ++ ++       L   I +         E  D S     +  F ++RVR       + 
Sbjct: 165 EMELETWDKPSFACLSSRIPYGQKITKEKIEQLDQSEEFLLNLGFRQIRVRHHGEIARIE 224

Query: 215 ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            L  +M+        + + +  L   Y+T+ +R  
Sbjct: 225 VLPEEMEMAIKYHQAIYHKLKELGFLYVTLDLRGY 259


>gi|91784093|ref|YP_559299.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia xenovorans LB400]
 gi|123168360|sp|Q13XE2|GUAA_BURXL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91688047|gb|ABE31247.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia xenovorans
           LB400]
          Length = 527

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H+++ +SGG DS      LH  + D      + + + VDH  LR     E  
Sbjct: 216 IREQVGQEHVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     L +   V+    S+           P+        E      +E  K  +A
Sbjct: 267 QVMATFADHLGVK--VIHVDASEVFLRKLAGVTDPEAKRKIIGAEFVEVFQTEAGKLTDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+     +   A + +        +   LNL +  P     ++++R 
Sbjct: 325 KWLAQGTIYPDVIES---AGKGKKATQTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRE 381

Query: 180 FLLQRNISW 188
             ++  +  
Sbjct: 382 LGVKLGLPP 390


>gi|322374000|ref|ZP_08048534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C150]
 gi|321276966|gb|EFX54037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C150]
          Length = 373

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 65/199 (32%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H    Q+   E   +   R      ++   LS +    L         P
Sbjct: 117 MTLGADYVATGHYA--QVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ ++R       ++
Sbjct: 171 LGHLQKPEVREIAEHAGLA 189


>gi|300812014|ref|ZP_07092467.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496997|gb|EFK32066.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 517

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 68/188 (36%), Gaps = 28/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A++++ +SGG DS      LH  +        + +AI VDH  LR+   DEV 
Sbjct: 216 IREEVGDANVILGISGGVDSSVTATLLHKAI------GSQLTAIFVDHGLLRKNESDEVM 269

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NAT 120
             + +   L +  ++V           +A      + R         + ++ A+ I +A 
Sbjct: 270 --AALKEGLGV--NIVRVDAKDRFMSKLAGVTDPEKKRKIIGNEFVQVFNDEAEKIKDAK 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E              +        +  D+   +  P  +  ++++R  
Sbjct: 326 FLAQGTLYTDVIE------SGTDTAHTIKSHHNVGGLPEDMQFKLIEPLRQLFKDEVRVL 379

Query: 181 LLQRNISW 188
             +  +  
Sbjct: 380 GEKLGLPH 387


>gi|315656315|ref|ZP_07909206.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493317|gb|EFU82917.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 528

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 37/196 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + I VDH  LR   +++V 
Sbjct: 217 IRQRVGDAQVICGLSGGVDSSVAAALVHKAIGD------QLTCIFVDHGLLRAGEREQVE 270

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQT-----------GLMAAAREARYALIS 111
              D  + + I    V             S+P+               AA RE    +  
Sbjct: 271 --RDYAANMGIRVKYVDESARFLGALAGVSEPEKKRKIIGREFIRSFEAAQREV---VAE 325

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A       ++    + D +E+             +        +  DL   +  P  +
Sbjct: 326 VGASGGEVKFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLKFELIEPLRK 380

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    Q  + 
Sbjct: 381 LFKDEVRELGRQLGLP 396


>gi|138893907|ref|YP_001124360.1| GMP synthase [Geobacillus thermodenitrificans NG80-2]
 gi|134265420|gb|ABO65615.1| GMP synthetase [Geobacillus thermodenitrificans NG80-2]
          Length = 513

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E VR  +R  V    +L A+SGG DS    + +H  + D      + + I VDH  LR+ 
Sbjct: 207 EQVRR-IREQVGGKKVLCALSGGVDSSVAAVLVHRAIGD------QLTCIFVDHGLLRKG 259

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
              E   V      + ++    V  K          S P+        E  Y    E AK
Sbjct: 260 ---EAESVMKTFREQFQMNVIKVDAKERFLAKLKGVSDPEQKRKIIGNEFIYVFDDEAAK 316

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 ++    + D +E            + +        +  D+   +  P     ++
Sbjct: 317 LEGIEFLVQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMKFELIEPLNTLFKD 370

Query: 176 DIRSFLLQRNIS 187
           ++R+   Q  I 
Sbjct: 371 EVRALGTQLGIP 382


>gi|160913582|ref|ZP_02076272.1| hypothetical protein EUBDOL_00058 [Eubacterium dolichum DSM 3991]
 gi|158434043|gb|EDP12332.1| hypothetical protein EUBDOL_00058 [Eubacterium dolichum DSM 3991]
          Length = 513

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 29/198 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+     +R  V    +L+ +SGG DS  +   LH  + D      +   + +DH  L
Sbjct: 200 SFIDVEIEAIRKKVGNDKVLLGLSGGVDSSVVAALLHKAIGD------QLICMFIDHGLL 253

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V       + I    +  K          S P+        E  Y    E
Sbjct: 254 RKG---EAESVMETFGREMNINLVKIDAKERFLSKLVGVSDPEAKRKIIGNEFVYTFDEE 310

Query: 113 HAKT---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             K     N   +     + D +E         +  + +        +  D+   +  P 
Sbjct: 311 VKKLTSGENIKWLAQGTLYTDVIE------SGTHTAQTIKSHHNVGGLPEDMQFQLIEPL 364

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R+      + 
Sbjct: 365 NTLFKDEVRALGEALGLP 382


>gi|237809068|ref|YP_002893508.1| tRNA-specific 2-thiouridylase MnmA [Tolumonas auensis DSM 9187]
 gi|259495840|sp|C4L952|MNMA_TOLAT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|237501329|gb|ACQ93922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tolumonas auensis DSM 9187]
          Length = 369

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 55/196 (28%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-------VRYV 73
            ++V +SGG DS      L           +K           E   DE       +   
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDSDEYCSAATDLADA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC +L I    V++             A  +  R               A +   A+ 
Sbjct: 60  QAVCDKLGIKLHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119

Query: 117 INATLIMTAH--TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A  I T H    DD   T + R  R      ++   L  +    +         P   
Sbjct: 120 LGADYIATGHYVRRDDS--TGHPRLLRGLDNNKDQSYFLYTLSSEQIAQS----LFPVGD 173

Query: 172 CRREDIRSFLLQRNIS 187
             +  +R+   Q  ++
Sbjct: 174 LEKPQVRAIAEQLGLA 189


>gi|222149632|ref|YP_002550589.1| tRNA-specific 2-thiouridylase MnmA [Agrobacterium vitis S4]
 gi|221736614|gb|ACM37577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Agrobacterium vitis S4]
          Length = 402

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 65/213 (30%), Gaps = 40/213 (18%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61
            P+ ++ F  R       ++VA+SGG DS  +   L     D     ++      DH   
Sbjct: 3   RPVNTLDFDKR--PEDTRVVVAMSGGVDSSVVAGILKREGYDVLGITLQLY----DHGAA 56

Query: 62  -LRETA---KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAA 102
             R  +     ++     VC  L I H V+ ++     T +                 A 
Sbjct: 57  VHRAGSCCAGQDIDDARRVCETLGIPHYVLDYEQRFRDTVINPFMDSYIAGETPIPCVAC 116

Query: 103 RE-ARYALISEHAKTINATLIMTAHTF--------DDQLETVYMRSQRDYAEKGMGLSGM 153
            +  ++A +   A+ + A  + T H          +D       R      ++   L   
Sbjct: 117 NQTVKFADLLATARELGADALATGHYIRSRATPLPNDPGHRALFRPIDSERDQSYFLFAT 176

Query: 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
               +     ++  P     + + R       +
Sbjct: 177 TQEQI----DYLRFPLGGLSKAETRKLAEDMGL 205


>gi|163853494|ref|YP_001641537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens PA1]
 gi|163665099|gb|ABY32466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium extorquens PA1]
          Length = 410

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 49/211 (23%)

Query: 15  SLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET--- 65
            L  P H   ++VA+SGG DS  +   L     D     ++      DH     R+    
Sbjct: 30  DLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRKGACC 85

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYAL 109
           A  ++     V   L I H V+ +++   ++ +   A                R  ++  
Sbjct: 86  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 145

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------Y 159
           +   A+ + A  + T H            + R   E G  L    D              
Sbjct: 146 LLGLARDLGAEALATGHYV----------ASRARPEGGRALYRALDPARDQSYFLYATTP 195

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           +   ++  P     +++ R+   +  ++  +
Sbjct: 196 EQLAYLRFPLGERPKDETRALARELGLAVAD 226


>gi|88608428|ref|YP_506753.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Neorickettsia sennetsu str. Miyayama]
 gi|88600597|gb|ABD46065.1| GMP synthase [Neorickettsia sennetsu str. Miyayama]
          Length = 519

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 25/191 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E  +  V +    A +L AVSGG DS      +H  + +R         I VD   LR+ 
Sbjct: 204 EEEKRMVVATTGDAGVLAAVSGGVDSTVAAKFMHGAIGER------LHCIFVDTGLLRKN 257

Query: 66  AKDEVRYVSDVCSRLRIAHSVV-----SWKNSKPQTGLMAAAREARYALI----SEHAKT 116
              E   V +  S L I   +V      +K            R      I     E  K 
Sbjct: 258 ---EANEVKESFSSLGIPLKIVFAADRFFKKLAGVADPEQKRRIVGETFIQVFEEEALKI 314

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E              +        +   + L +  PF    +++
Sbjct: 315 QGVEFLLQGTLYPDVIE------SGGGGSHTIKSHHNVGGLPKKMGLKLLEPFRLLFKDE 368

Query: 177 IRSFLLQRNIS 187
           +R+   Q  +S
Sbjct: 369 VRAIGRQLGVS 379


>gi|304314860|ref|YP_003850007.1| GMP synthase, subunit B [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588319|gb|ADL58694.1| GMP synthase, subunit B [Methanothermobacter marburgensis str.
           Marburg]
          Length = 308

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 30/193 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R+ V     ++A+SGG DS        SVL+ ++ G    +A+ VDH  L
Sbjct: 6   DFIQKAVEEIRNTVGDEKAIIALSGGVDSSV-----ASVLAGKAIGD-NLTAVFVDHGLL 59

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
           RE    E  YV      RL   +   S +        + P+       R     +    A
Sbjct: 60  REG---EAEYVKKTFSDRLNFRYIDASDEFLGELEGVTDPEEKRKIIGRVF-IEVFERVA 115

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + I A  ++      D +E+           +G   S     + + L L I  P     +
Sbjct: 116 EEIGARYLVQGTIAPDWIES-----------EGKIKSHHNVALPHGLVLEIVEPIRELYK 164

Query: 175 EDIRSFLLQRNIS 187
           +++R   L+  + 
Sbjct: 165 DEVREIGLELGLP 177


>gi|258543332|ref|YP_003188765.1| GMP synthase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634410|dbj|BAI00386.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637468|dbj|BAI03437.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640520|dbj|BAI06482.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643577|dbj|BAI09532.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646632|dbj|BAI12580.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649685|dbj|BAI15626.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652673|dbj|BAI18607.1| glutamine amidotransferase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655729|dbj|BAI21656.1| glutamine amidotransferase [Acetobacter pasteurianus IFO 3283-12]
          Length = 533

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + I VDH  LR    D+V 
Sbjct: 229 IREQVGDGKVICGLSGGVDSSVAAVLIHEAIGD------QLTCIFVDHGMLRAGEADDV- 281

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            +     +  I        +         + P+       R        E  K   A  +
Sbjct: 282 -IKTFRGQFNIQLVHRDASDIFLKELDGVTDPEIKRKTIGRLFVEVFEEEATKLGGAQFL 340

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 341 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPDRMNMKLVEPLRELFKDEVRDLGR 397

Query: 183 QRNIS 187
           +  I 
Sbjct: 398 ELGIP 402


>gi|126737665|ref|ZP_01753395.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseobacter sp. SK209-2-6]
 gi|126721058|gb|EBA17762.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Roseobacter sp. SK209-2-6]
          Length = 527

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    I +H  + D      + + + VDH  LR+   +EV 
Sbjct: 223 IREQVGDKQVICGLSGGVDSSVAAILIHEAIGD------QLTCVFVDHGLLRKNEAEEV- 275

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
            V+       I          +             R+    L  +  +        A  +
Sbjct: 276 -VAMFRDNYNIKLIHADESDLFLGELDGQSDPETKRKIIGKLFIDVFQKHADTIEGAEFL 334

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 335 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGR 391

Query: 183 QRNIS 187
           +  + 
Sbjct: 392 ELGLP 396


>gi|157165563|ref|YP_001466326.1| hypothetical protein CCC13826_1003 [Campylobacter concisus 13826]
 gi|112800843|gb|EAT98187.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 257

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 36/196 (18%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ +E ++  ++ L    ++ VA SGG DS  LL     VL + +       A++V    
Sbjct: 1   MTKLEILKNDIKKL---GNLAVAFSGGVDSSLLLKVAADVLGENAL------ALTV---K 48

Query: 63  RET-AKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTI 117
               +  E+    +      I H +       +            ++A ++ +   A  +
Sbjct: 49  SPYMSLREIDEAVEFTKFYGIRHEIFEVGIVDEIKLNPQNRCYLCKKAVFSRLIARANEL 108

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             T +      DD  E                       +     L +  P +  R+ +I
Sbjct: 109 GFTNLADGTNKDDLGE-------------------YRPGLKAKEELSVLSPLINLRKFEI 149

Query: 178 RSFLLQRNISWCEDPS 193
           R    + N+S  E PS
Sbjct: 150 RELSRELNLSTAEKPS 165


>gi|78043170|ref|YP_361010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|123575599|sp|Q3AA24|MNMA_CARHZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77995285|gb|ABB14184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 365

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 64/196 (32%), Gaps = 37/196 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAI---SVDHCLRETAKDEVR 71
             +LVA+SGG DS      L     +           K   I    V  C    A ++ R
Sbjct: 7   KKVLVAMSGGVDSSVTAALLLEQGYEVVGVTMQIWDPKIEVIGEEYVG-CCSIYAVNDAR 65

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAREA---------RY---ALISEHAK 115
            V+D   RL I + V++++    +  +        R           RY     + + A 
Sbjct: 66  RVAD---RLGIPYYVLNFRELFERKVIDYFTEEYLRGRTPNPCIACNRYIKFDALLKKAL 122

Query: 116 TINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           ++    + T H       DD  +    R      ++   L  +   +L      +  P  
Sbjct: 123 SLGMDYMATGHYARVVYKDDIGKYGLFRGVDRKKDQTYVLYNLTQDMLRR----LLLPLG 178

Query: 171 RCRREDIRSFLLQRNI 186
              +E +R    + N+
Sbjct: 179 EYTKEQVRELARKYNL 194


>gi|257064368|ref|YP_003144040.1| GMP synthase, glutamine-hydrolyzing, C-terminal domain or B
          subunit [Slackia heliotrinireducens DSM 20476]
 gi|256792021|gb|ACV22691.1| GMP synthase, glutamine-hydrolyzing, C-terminal domain or B
          subunit [Slackia heliotrinireducens DSM 20476]
          Length = 327

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 6  IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
          IE    + R  V    +L+A+SGG DS  +   L   +        +   + V+H L
Sbjct: 25 IEEAVAYTREQVGDGKVLLALSGGVDSSVVAALLIKAIGK------QLVCVHVNHGL 75


>gi|296158878|ref|ZP_06841706.1| GMP synthase, large subunit [Burkholderia sp. Ch1-1]
 gi|295890753|gb|EFG70543.1| GMP synthase, large subunit [Burkholderia sp. Ch1-1]
          Length = 527

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H+++ +SGG DS      LH  + D      + + + VDH  LR     E  
Sbjct: 216 IREQVGQEHVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     L +   V+    S+           P+        E      +E  K  +A
Sbjct: 267 QVMATFADHLGVK--VIHVDASEVFLRKLAGVTDPEAKRKIIGAEFVEVFQTEAGKLTDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+     +   A + +        +   LNL +  P     ++++R 
Sbjct: 325 KWLAQGTIYPDVIES---AGKGKKATQTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRE 381

Query: 180 FLLQRNISW 188
             ++  +  
Sbjct: 382 LGVKLGLPP 390


>gi|261367050|ref|ZP_05979933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Subdoligranulum variabile DSM 15176]
 gi|282571170|gb|EFB76705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Subdoligranulum variabile DSM 15176]
          Length = 348

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 29/185 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +L+ +SGG DS   +  L           I+FS               V    +    L
Sbjct: 12  KVLMGMSGGVDSSVAVRILQEQGFAVQGAVIRFSPAH---------DGAVSAAQESAKTL 62

Query: 81  RIAHSVVSWKNSKPQTGL----MAAAREA------------RYALISEHAKTINATLIMT 124
           +I   ++  +++  Q  +     +                 ++ L++E A  +    I T
Sbjct: 63  QIPLHIIDARDAFEQHVILPFCESYCAGMTPNPCILCNPLVKFRLLAEKANELGCQFIAT 122

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            H    ++E  +    R    +      S M   +  ++   +  P     ++DIR    
Sbjct: 123 GHYA--RVEVDHKGVSRIAVPQSTARDQSYMLYRLPQEILSKLILPLGEFEKDDIREMAR 180

Query: 183 QRNIS 187
             +++
Sbjct: 181 DIHLA 185


>gi|95930240|ref|ZP_01312978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133703|gb|EAT15364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 346

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 28/184 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG DS      L     +     ++           + +         +   L 
Sbjct: 6   VLVAMSGGVDSSVTAALLIDQGYEVIGAHMRLLP-------GDQSIQGEADARRIAEELE 58

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINATLIMTA 125
           I    +  +++     +    RE R                   +   A  + A  + T 
Sbjct: 59  IPFHSLDCRDTFNAAIIGDFCREYRAGRTPNPCVRCNQQFKFGALFALADELGADYLATG 118

Query: 126 HTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           H    D Q + V  R  R   ++      +   +       +  P     + ++R+   +
Sbjct: 119 HYARIDRQKDHV--RLCRGLYKQKDQSYFLF-VLSAAQLKRVLFPLGGLTKPEVRNLAEK 175

Query: 184 RNIS 187
            ++S
Sbjct: 176 YHLS 179


>gi|312869501|ref|ZP_07729656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus oris PB013-T2-3]
 gi|311094948|gb|EFQ53237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus oris PB013-T2-3]
          Length = 377

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 45/197 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAKTI 117
           + V +++ I +  V+++        K         R          E ++    E+A  +
Sbjct: 60  AKVAAKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 118 NATLIMTAHTFDDQLETVY-------MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  + T H  D              M   R   +       +   + Y     +  P  
Sbjct: 120 GADYVATGHYAD------LKRDADGRMHLMRAADQHKDQTYFLSQ-LDYHQLDKVLFPLA 172

Query: 171 RCRREDIRSFLLQRNIS 187
              +  IR    +  ++
Sbjct: 173 NYTKPQIREIAKEAGLA 189


>gi|90415927|ref|ZP_01223860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2207]
 gi|90332301|gb|EAS47498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2207]
          Length = 370

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 46/195 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS    + L           +K               DE  Y        
Sbjct: 6   KVIVGMSGGVDSSVAALLLMEQGYSVEGLFMKNW----------DEDDETEYCTAKADLA 55

Query: 74  --SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAK 115
               VC +L I     +     W N          A           RE ++ +  ++A+
Sbjct: 56  DAQQVCDKLGITLHTANFAADYWDNVFEHFLEEYRAGRTPNPDILCNREIKFKVFLDYAQ 115

Query: 116 TINATLIMTAH-TFDDQLE----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A  I T H T     E    T  ++      ++   L  + +   +  +L+   P  
Sbjct: 116 ILGADAIATGHYTR--LAEVDGQTRLLKGLDGNKDQSYFLHAV-EQSAFAKSLF---PVG 169

Query: 171 RCRREDIRSFLLQRN 185
              + ++R    +  
Sbjct: 170 ELEKPEVRRIAEEHG 184


>gi|296268616|ref|YP_003651248.1| GMP synthase large subunit [Thermobispora bispora DSM 43833]
 gi|296091403|gb|ADG87355.1| GMP synthase, large subunit [Thermobispora bispora DSM 43833]
          Length = 517

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 63/210 (30%), Gaps = 40/210 (19%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L+ +E     VR  +     +  +SGG DS      +H  + DR       + + VDH 
Sbjct: 198 MLNIVEDAVEAVREQIGDGRAICGLSGGVDSAVAAAIVHRAIGDR------LTCVFVDHG 251

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVS-----------WKNSKPQTGL---------MA 100
            LR+   ++V    D  +   +   VV             ++ + +  +           
Sbjct: 252 LLRKGEAEQVE--RDFVAATGVKLRVVDASDRFLKALAGVRDPEEKRKIIGREFIRVFED 309

Query: 101 AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
            AR  R               ++    + D +E+             +        +  D
Sbjct: 310 EARAIRATAGGPV------DFLVQGTLYPDVVES-----GHGTGTANIKSHHNVGGLPED 358

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           L   +  P     ++++R    +  +    
Sbjct: 359 LKFTLVEPLRTLFKDEVRRAGEELGLPPAI 388


>gi|254470572|ref|ZP_05083976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudovibrio sp. JE062]
 gi|211960883|gb|EEA96079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudovibrio sp. JE062]
          Length = 400

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 67/193 (34%), Gaps = 27/193 (13%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++VA+SGG DS  +   +     D     ++      DH     R+    A  ++
Sbjct: 11  PEDTRVVVAMSGGVDSSVVAGLMKREGYDVVGVTLQLY----DHGEAIQRKGACCAGQDI 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V  +L I H V+ +++   +  +   A                   ++  + E A
Sbjct: 67  HDARRVAEKLGIPHYVLDYESRFKEQVIERFADSYINGETPIPCVTCNQTVKFKDLLETA 126

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K + A +++T H     +E   +   R           +  T    L+ ++  P     +
Sbjct: 127 KDLGADVLVTGHYVRTGMEGNQLAMFRPVDLDRDQSYFLFATTQEQLD-FLRFPLGGMTK 185

Query: 175 EDIRSFLLQRNIS 187
            ++R    + +++
Sbjct: 186 PEVRELAREFDLA 198


>gi|327182788|gb|AEA31235.1| GMP synthase [Lactobacillus amylovorus GRL 1118]
          Length = 516

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + +      + +AI VDH  LR+   D+V 
Sbjct: 215 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGN------QLTAIFVDHGMLRKDEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 269 --KALNKDLGVNIIRVNAQKRFLDKLKGVTDPEKKRKIIGKEFIEVFNEEAKKIKDVDFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 327 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELGE 380

Query: 183 QRNISW 188
           +  I  
Sbjct: 381 KLGIPH 386


>gi|325955953|ref|YP_004286563.1| GMP synthase [Lactobacillus acidophilus 30SC]
 gi|325332518|gb|ADZ06426.1| GMP synthase [Lactobacillus acidophilus 30SC]
          Length = 511

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + +      + +AI VDH  LR+   D+V 
Sbjct: 215 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGN------QLTAIFVDHGMLRKDEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 269 --KALNKDLGVNIIRVNAQKRFLDKLKGVTDPEKKRKIIGKEFIEVFNEEAKKIKDVDFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 327 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELGE 380

Query: 183 QRNISW 188
           +  I  
Sbjct: 381 KLGIPH 386


>gi|315037493|ref|YP_004031061.1| GMP synthase [Lactobacillus amylovorus GRL 1112]
 gi|312275626|gb|ADQ58266.1| GMP synthase [Lactobacillus amylovorus GRL 1112]
          Length = 516

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + +      + +AI VDH  LR+   D+V 
Sbjct: 215 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGN------QLTAIFVDHGMLRKDEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 269 --KALNKDLGVNIIRVNAQKRFLDKLKGVTDPEKKRKIIGKEFIEVFNEEAKKIKDVDFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 327 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELGE 380

Query: 183 QRNISW 188
           +  I  
Sbjct: 381 KLGIPH 386


>gi|205822340|sp|A9W8W7|MNMA_METEP RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 385

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 49/211 (23%)

Query: 15  SLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET--- 65
            L  P H   ++VA+SGG DS  +   L     D     ++      DH     R+    
Sbjct: 5   DLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRKGACC 60

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYAL 109
           A  ++     V   L I H V+ +++   ++ +   A                R  ++  
Sbjct: 61  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------Y 159
           +   A+ + A  + T H            + R   E G  L    D              
Sbjct: 121 LLGLARDLGAEALATGHYV----------ASRARPEGGRALYRALDPARDQSYFLYATTP 170

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           +   ++  P     +++ R+   +  ++  +
Sbjct: 171 EQLAYLRFPLGERPKDETRALARELGLAVAD 201


>gi|157363094|ref|YP_001469861.1| GMP synthase [Thermotoga lettingae TMO]
 gi|157313698|gb|ABV32797.1| GMP synthase, large subunit [Thermotoga lettingae TMO]
          Length = 504

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 62/182 (34%), Gaps = 17/182 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    ++ A+SGG DS    + +H  + +          + VDH  LR+  ++EV 
Sbjct: 202 LREHLSGKKVVAALSGGVDSSVACVLVHRAIGENLLN------VFVDHGLLRKNEEEEVP 255

Query: 72  YVSDVCSRLR---IAHSVVSWKNSKPQTGLMAAAREARYAL---ISEHAKTINATLIMTA 125
            +      L    I    V  +  +         +           + AK   AT ++  
Sbjct: 256 RIFRQVLGLNLLKIDARKVFLEKLRGIVDPEKKRKIIGEQFIRVFEKEAKRYGATHLIQG 315

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E+    ++       +        +   ++L I  P     ++++R       
Sbjct: 316 TIYSDVIES----AKSGKKTAAIKSHHNVGGLPQRMDLEIVEPLKNLFKDEVRIVGEMLG 371

Query: 186 IS 187
           I 
Sbjct: 372 IP 373


>gi|138895516|ref|YP_001125969.1| hypothetical protein GTNG_1864 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267029|gb|ABO67224.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 274

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 93/275 (33%), Gaps = 54/275 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +     V  L    ++LVA SGG DS  LL      L D+    +  +A+         +
Sbjct: 7   QKREQLVHLLKEMGNVLVAFSGGVDSTFLLAMAKEALGDQV---LAVTAV---------S 54

Query: 67  K----DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKT 116
           +     EV++ + +  ++ + H  +           K         +   Y  + E A+ 
Sbjct: 55  ETFPVREVQHATKLAEQIGVKHIKIQIHELENEDFVKNDLHRCFHCKHNLYTHLGELARK 114

Query: 117 INATL-IMTAHTFDDQLETVY-MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                 ++     DD  E    +++ R    +    S + +  LY   + I        +
Sbjct: 115 YGHMYTVVDGSNMDDLGEYRPGLQAARQLGVR----SPLQEVQLYKKEIRI------LSK 164

Query: 175 E-DIRSF------LLQRNISW--------CE--DPSNT---DDRFERVRVRRFVRDIDLH 214
           E ++ ++       L   I +         E  D S     +  F ++RVR       + 
Sbjct: 165 EMELETWDKPSFACLSSRIPYGQKITKEKIEQLDQSEEFLLNLGFRQIRVRHHGEIARIE 224

Query: 215 ALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
            L  +M+        + + +  L   Y+T+ +R  
Sbjct: 225 VLPEEMEMAIKYHQAIYHKLKELGFLYVTLDLRGY 259


>gi|291561395|emb|CBL40194.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [butyrate-producing bacterium SS3/4]
          Length = 514

 Score = 55.7 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 32/198 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E+    +R  V    +L A+SGG DS    + L   + D      + + + VDH  LR+
Sbjct: 202 VENSIKAIREKVGNGKVLCALSGGVDSSVAAVMLAKAVGD------QLTCVFVDHGLLRK 255

Query: 65  TAKDEVRYVSDVCSRLR----IAHSVVSWKNSKPQ----TGLMAAAREAR------YALI 110
              DEV  V                 +     +       G+    R+ +        + 
Sbjct: 256 NEGDEVEEV------FGPNGPYDLHFIRVNAQQRFYDKLAGVEEPERKRKIIGEEFIRVF 309

Query: 111 SEHAKTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            E AK I A   ++    + D +E+     +    +    + G+ D + +     I  P 
Sbjct: 310 EEEAKKIGAVDFLVQGTIYPDVVESGL-GGESAVIKSHHNVGGLPDYVDFK---EIIEPL 365

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   L+  I 
Sbjct: 366 RDLFKDEVRKAGLELGIP 383


>gi|315230077|ref|YP_004070513.1| TilS-like tRNA(Ile)-lysidine synthetase [Thermococcus barophilus
           MP]
 gi|315183105|gb|ADT83290.1| TilS-like tRNA(Ile)-lysidine synthetase [Thermococcus barophilus
           MP]
          Length = 269

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 62/196 (31%), Gaps = 27/196 (13%)

Query: 1   MFLSPIESVRFFVRS-LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M    I+  + F  +  ++   IL+  SGG DS   L  +           +  SAI+  
Sbjct: 1   MLAEIIKETKQFAENTGLHKKKILLMFSGGKDSSLALYIMKK-------AGLDVSAITFF 53

Query: 60  HCLRETAKDEVRYVS-DVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISE 112
           H     +  E          +LR+ H ++             +  +    ++        
Sbjct: 54  HKW---SWRETLLWGMRFTEKLRVEHYLIDITEGLLKNSIGKKGPICIHCKKVMMRNAYW 110

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK     ++      +D++    +   +           +  + +  + + + RP ++ 
Sbjct: 111 FAKINGFKVLAKGDNANDKIIGALLDQWKGD---------IRLSEIPRIGIPVFRPLIKY 161

Query: 173 RREDIRSFLLQRNISW 188
             E++     +  I  
Sbjct: 162 TAEEVEKLAKEAGIKP 177


>gi|170290743|ref|YP_001737559.1| GMP synthase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174823|gb|ACB07876.1| GMP synthase, large subunit [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 504

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 64/197 (32%), Gaps = 29/197 (14%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            LS IES  +  + +     +L AVSGG DS        ++L+ R  G  K   + V+H 
Sbjct: 196 MLSLIES--YLAKEISGCKKVLAAVSGGVDSTV-----STLLASRVAGD-KVVPVFVNHG 247

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL------MAAAREAR----YALI 110
            LR+    E   V      + I   V+    S+               RE        + 
Sbjct: 248 LLRKG---EAESVLSSLKSIGID--VIYVDASEEFLSSLKGIKDCEKKREIIGEIFARIF 302

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           SE ++      ++    + D +E+       +     +        +       +  P  
Sbjct: 303 SEISEREGCDCLLQGTLYPDVVES-----GAEIGADRIKSHHNVAGLPPWFKGRVLEPLR 357

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R       I 
Sbjct: 358 YLYKDEVRKLAKYLGIP 374


>gi|297584733|ref|YP_003700513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus selenitireducens MLS10]
 gi|297143190|gb|ADH99947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus selenitireducens MLS10]
          Length = 371

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                I+V +SGG DS      L         +         +F   +        A ++
Sbjct: 7   PEDTRIVVGMSGGVDSSVTAHLLKEQGYEVIGIFMKNWDDTDEFGVCT--------ATED 58

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  VC++L I +  V+++                + R          E ++    +H
Sbjct: 59  YEDVIRVCNQLDIPYYAVNFEKQYWDKVFTYFLDEYKSGRTPNPDVMCNKEIKFKAFLDH 118

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A T+ A  + T H        D ++   +R +    ++   L+ +    L      +  P
Sbjct: 119 AMTLGADYVATGHYAKVSHTPDGVK--LLRGKDRNKDQTYFLNALSQDQLR----HVLFP 172

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +  +R    +  ++
Sbjct: 173 LGDIEKPRVREIAEEAGLA 191


>gi|62184976|ref|YP_219761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila abortus S26/3]
 gi|73920121|sp|Q5L6D1|MNMA_CHLAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|62148043|emb|CAH63795.1| tRNA-methyltransferase [Chlamydophila abortus S26/3]
          Length = 362

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 31/189 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-------KDEVRYVS 74
           ++VA+SGG DS  +   L    S R  G              E           +   V 
Sbjct: 5   VVVAMSGGVDSSVVAYLLKKYTSYRVLGIFMK-------NWEEEDSNGLCSTAKDYEDVE 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
            V  +L I +  VS+     +                       RE ++ L+ +    + 
Sbjct: 58  RVAEQLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELG 117

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              + T H     +++  +   R           +C T    L   +  P     + ++R
Sbjct: 118 GDFLATGHYCRLDVKSQRVGLLRGKDPHKDQSYFLCGTHPESLKNVLF-PLGDMTKREVR 176

Query: 179 SFLLQRNIS 187
           S   Q  ++
Sbjct: 177 SIAAQAGLA 185


>gi|316935452|ref|YP_004110434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris DX-1]
 gi|315603166|gb|ADU45701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris DX-1]
          Length = 401

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 63/210 (30%), Gaps = 46/210 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L +   D     ++      DH     R+    A
Sbjct: 11  LEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLY----DHGAAIHRKGACCA 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 67  GQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRDL 126

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYD 160
              A+ + A+ + T H              R        L    D              +
Sbjct: 127 LATARELGASALATGHYVS----------SRRLENGSRALVCAADRDRDQSYFLFATTRE 176

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCE 190
              ++  P     +   R    Q  +S  +
Sbjct: 177 QLQFLRFPLGDMTKPQTRELARQFGLSVAD 206


>gi|227486632|ref|ZP_03916948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235344|gb|EEI85359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 367

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 68/192 (35%), Gaps = 36/192 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     +          TA+++     
Sbjct: 8   KVIVGISGGVDSSVAALLLKEEGYDVTGIFMKNWDDTDENGFC-------TAEEDFEDAV 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            VC+++ I +  ++++                  R          E ++    + AK + 
Sbjct: 61  AVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKNLG 120

Query: 119 ATLIMTAHTFD-DQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           A  + T H    D+   ET  +R   +  ++   LS +    + D    +  P    ++ 
Sbjct: 121 ADYLATGHYARVDRTDGETKMLRGLDNNKDQTYFLSQLSQEQIKD----VLFPVGDLQKS 176

Query: 176 DIRSFLLQRNIS 187
           ++R    +  ++
Sbjct: 177 EVREIAKKAGLA 188


>gi|326390151|ref|ZP_08211712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993799|gb|EGD52230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 364

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 52/234 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH------------CLRETAKD 68
            + + +SGG DS      L     D     +K     VDH             LR  A  
Sbjct: 6   RVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVW---VDHEAKAFDSDKSCCSLR--ATQ 60

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISE 112
           + + V+++   L + H  V +                             R+ ++  + E
Sbjct: 61  DAKKVAEM---LGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNRQIKFGELLE 117

Query: 113 HAKTINATLIMTAHT-FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---- 167
            A  + A  I T H    D  E    +++R   +KG+  S     +LY L          
Sbjct: 118 KAFELGAYYIATGHYVRKDYDE----KTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALF 173

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFERVRVRRFVRDIDLHA 215
           P    ++E+IR+   +  +   + P +       D+ +    ++R V+D     
Sbjct: 174 PLGNYKKEEIRALAEELKLPVAKKPESQEICFIPDNDYS-GFIKRQVKDEIKPG 226


>gi|331082801|ref|ZP_08331923.1| GMP synthase 2 [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400130|gb|EGG79779.1| GMP synthase 2 [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 430

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 24/197 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +R  V    +L+A+SGG DS  +   L   +        +   + V+H 
Sbjct: 118 MKNFIEDQVELIRKQVGDKKVLLALSGGVDSSVVAAMLIKAIGQ------QLVCVHVNHG 171

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSW---------KNSKPQTGLMAAAREARYALIS 111
           L R+   + V  V      L      V             + P+        E       
Sbjct: 172 LMRKNESESV--VKIFRDELHANLIYVDATERFLGKLENVADPEEKRKIIGGEFIRVFEE 229

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  K      +     + D +E            K +        +  DL   +  P  +
Sbjct: 230 EARKLEGIDFLGQGTIYPDIIE------SGTKTAKCVKSHHNVGGLPEDLQFELVEPLKQ 283

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R+  ++  +  
Sbjct: 284 LFKDEVRACGIELGLPH 300


>gi|260587030|ref|ZP_05852943.1| GMP synthase domain protein [Blautia hansenii DSM 20583]
 gi|260542520|gb|EEX23089.1| GMP synthase domain protein [Blautia hansenii DSM 20583]
          Length = 430

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 24/197 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +R  V    +L+A+SGG DS  +   L   +        +   + V+H 
Sbjct: 118 MKNFIEDQVELIRKQVGDKKVLLALSGGVDSSVVAAMLIKAIGQ------QLVCVHVNHG 171

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSW---------KNSKPQTGLMAAAREARYALIS 111
           L R+   + V  V      L      V             + P+        E       
Sbjct: 172 LMRKNESESV--VKIFRDELHANLIYVDATERFLGKLENVADPEEKRKIIGGEFIRVFEE 229

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  K      +     + D +E            K +        +  DL   +  P  +
Sbjct: 230 EARKLEGIDFLGQGTIYPDIIE------SGTKTAKCVKSHHNVGGLPEDLQFELVEPLKQ 283

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R+  ++  +  
Sbjct: 284 LFKDEVRACGIELGLPH 300


>gi|114327814|ref|YP_744971.1| GMP synthase [Granulibacter bethesdensis CGDNIH1]
 gi|114315988|gb|ABI62048.1| GMP synthase (glutamine-hydrolyzing) [Granulibacter bethesdensis
           CGDNIH1]
          Length = 522

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 66/195 (33%), Gaps = 25/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
            P E  R  +R +V    ++  +SGG DS    + +H  + D      + + I VDH L 
Sbjct: 211 RPAEIKR--IREIVGEGRVICGLSGGVDSTVAAVLIHEAIGD------QLTCIFVDHGLL 262

Query: 63  -RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
            +  A+  +    D   R  I        +         S P+       +        E
Sbjct: 263 RQSEAEQVLAMFRD---RFNIKLVHRDASDLFLGALEGVSDPEVKRKTIGKLFIDVFEEE 319

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK   A  +     + D +E++   S        +        +   + + +  P    
Sbjct: 320 AAKIGGADFLAQGTLYPDVIESI---SFTGGPSVTIKSHHNVGGLPERMRMKLVEPLREL 376

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+  L+  + 
Sbjct: 377 FKDEVRALGLELGLP 391


>gi|271500468|ref|YP_003333493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii Ech586]
 gi|270344023|gb|ACZ76788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii Ech586]
          Length = 370

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 53/197 (26%), Gaps = 43/197 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW----------EEDDDTEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E R                  A +   
Sbjct: 57  ADAQAVCDKLGITLHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    L         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDIDGKSRLLRGLDGNKDQSYFLYTLSHQQLAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    Q +++
Sbjct: 173 ELEKPEVRKIAEQLDLA 189


>gi|269119363|ref|YP_003307540.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
 gi|268613241|gb|ACZ07609.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
          Length = 353

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 36/193 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET------AKDE 69
              ++V +SGG DS    + L            +   I++ H    L E       + D+
Sbjct: 2   KTKVIVGMSGGVDSSAAALFLKK-------QGYEVIGITLKHLPDELSENGGKTCCSIDD 54

Query: 70  VRYVSDVCSRLRIAHSVVSW---------------KNSKPQTGLMAAA-REARYALISEH 113
           +    +VCS L I H  +                  N             + +   ++E 
Sbjct: 55  ITDAKNVCSHLEIPHYTIDVSEEFKKEVMDYFIKMYNEGKTPSPCVICDEKIKIKKLAEI 114

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  + A  I T H     LE   +   R+  +    +    DT +    L+   P     
Sbjct: 115 ADKMGAEYIATGHYSGKTLENKLI-WDRENTKDQTYMLYRLDTGILSRMLF---PLSGYN 170

Query: 174 REDIRSFLLQRNI 186
           +++IR  + +  I
Sbjct: 171 KKEIREIVKEAGI 183


>gi|256372326|ref|YP_003110150.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008910|gb|ACU54477.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 341

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 42/198 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRY 72
           A ++VA+SGG DS    +       D     ++ +         E A D       +V  
Sbjct: 2   ARVVVAMSGGVDSSVAALMAREAGHDVIGVTLRLT---------EAAGDRGCCSVGDVED 52

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM----AAAREA---------RY---ALISEHAKT 116
              V + L I H V   +    +  +     A  R           RY     ++  A+ 
Sbjct: 53  ARTVAALLGINHIVADMRAEFHRAVVEPYLDAHRRGWTPNPCMSCNRYVKVTALAAWAQR 112

Query: 117 INATLIMTAHTFDDQLETVYMR----SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           + A+ ++T H       TV         R    +      + D +  ++   +  P    
Sbjct: 113 LGASRLVTGHYA-----TVLDGSRPMLVRGRDRRKDQSYVLAD-VPPEVLARLWLPLGEL 166

Query: 173 RREDIRSFLLQRNISWCE 190
            ++++R+      +   +
Sbjct: 167 SKDEVRTRAHAAGLPVWD 184


>gi|328463846|gb|EGF35386.1| GMP synthase [Lactobacillus helveticus MTCC 5463]
          Length = 516

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 215 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 269 --QALNKDLGVNIIRVNAQKRFLDKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVKFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 327 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELGE 380

Query: 183 QRNISW 188
           +  I  
Sbjct: 381 RLGIPH 386


>gi|188583764|ref|YP_001927209.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium populi BJ001]
 gi|179347262|gb|ACB82674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium populi BJ001]
          Length = 395

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 49/211 (23%)

Query: 15  SLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET--- 65
            L  P H   ++VA+SGG DS  +   L     D     ++      DH     R+    
Sbjct: 15  DLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRKGACC 70

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYAL 109
           A  ++     V   L I H V+ +++   ++ +   A                R  ++  
Sbjct: 71  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 130

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------Y 159
           +   A+ + A  + T H            + R   E G  L    D              
Sbjct: 131 LLGMARDLGAEALATGHYV----------ASRAQPEGGRALYRALDPARDQSYFLYATTP 180

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           +   ++  P     +++ R+   +  ++  +
Sbjct: 181 EQLAFLRFPLGERPKDETRALARELGLAVAD 211


>gi|260102261|ref|ZP_05752498.1| GMP synthase [Lactobacillus helveticus DSM 20075]
 gi|111610209|gb|ABH11596.1| GMP synthase/glutamine amidotransferase [Lactobacillus helveticus
           CNRZ32]
 gi|260083934|gb|EEW68054.1| GMP synthase [Lactobacillus helveticus DSM 20075]
          Length = 525

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + D      + +AI VDH  LR+   D+V 
Sbjct: 224 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGD------QLTAIFVDHGMLRKDEGDQVM 277

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+ +          + P+       +E       E  K  +   +
Sbjct: 278 --QALNKDLGVNIIRVNAQKRFLDKLKGVTDPEQKRKIIGKEFIEVFNEEAKKLKDVKFL 335

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 336 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELGE 389

Query: 183 QRNISW 188
           +  I  
Sbjct: 390 RLGIPH 395


>gi|307131188|ref|YP_003883204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii 3937]
 gi|306528717|gb|ADM98647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii 3937]
          Length = 370

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYRVEGLFMKNW----------EEDDDTEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E R                  A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|300023996|ref|YP_003756607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525817|gb|ADJ24286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 397

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 37/200 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEVR 71
               ++VA+SGG DS      + +   D     ++      DH     R+ +     ++ 
Sbjct: 13  AKKRVVVAMSGGVDSSVAAAIMKAAGHDVIGVTLQLY----DHGSATGRKGSCCAGQDIH 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAK 115
               V   L I H V+ ++    Q  + + A                 E ++  + E AK
Sbjct: 69  DARRVADALGIPHYVLDYEARFAQKVIESFAESYVHGETPIPCVTCNNEIKFRDLLETAK 128

Query: 116 TINATLIMTAH--TFDDQL---ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A +++T H     D     E    R+     ++   L G+    L      +  P  
Sbjct: 129 DLGAEVLVTGHYVQRRDTEHGPE--LARAVDTDRDQSYFLFGITKAQLAA----LWFPVG 182

Query: 171 RCRREDIRSFLLQRNISWCE 190
              + ++R      N+   +
Sbjct: 183 ALEKSEVRDLARSFNLPVAD 202


>gi|205822083|sp|Q2ISK2|MNMA_RHOP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 65/206 (31%), Gaps = 46/206 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++VA+SGG DS      L S   D     ++      DH     R+    A  ++
Sbjct: 11  PQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLY----DHGAATHRKGACCAGQDI 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
               DV  R+ I H V+ +++   ++ + + A                R  ++  +   A
Sbjct: 67  HDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRDLLATA 126

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNLW 164
           + + A+ + T H              R  A+    L    D              +   +
Sbjct: 127 RELGASALATGHYVS----------SRRLADGSRALICAADRDRDQSYFLFATTREQLDF 176

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCE 190
           +  P     +   R    Q  +S  +
Sbjct: 177 LRFPLGDMTKPQTRDLARQFGLSVAD 202


>gi|39935272|ref|NP_947548.1| GMP synthase [Rhodopseudomonas palustris CGA009]
 gi|44887926|sp|P60501|GUAA_RHOPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|39649124|emb|CAE27644.1| GMP synthetase [Rhodopseudomonas palustris CGA009]
          Length = 540

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 45/197 (22%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR   KDE +
Sbjct: 236 IRAQVGTGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLLR---KDEGK 286

Query: 72  YVSDVCSRL-RIAHSVVSW--------------KNSKPQTG------LMAAAREARYALI 110
            V D+      I    V                +  +   G        A AR       
Sbjct: 287 SVVDLFRHHYNIPLVHVDVSETFLGALKGVTDPEQKRKTIGKLFIDVFEAEARRV----- 341

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                   A  +     + D +E+V   S        +        +   +N+ +  P  
Sbjct: 342 ------GGADFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLR 392

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 393 ELFKDEVRALGRELGLP 409


>gi|198282965|ref|YP_002219286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666259|ref|YP_002425168.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|259495823|sp|B7J5X6|MNMA_ACIF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|259495824|sp|B5ENY8|MNMA_ACIF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|198247486|gb|ACH83079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518472|gb|ACK79058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 352

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 30/185 (16%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A+SGG DS    + +     + +   ++    S     R   + ++   +++C+RL I
Sbjct: 7   LIALSGGVDSAVAALLMQGQGYELTGVTMRLWPRS-----RCCDEKDIEDAAEICARLGI 61

Query: 83  AHSVVSWKNSKPQT------GLMAAARE----AR------YALISEHAKTINATLIMTAH 126
            ++V+ ++ +  +           A R     AR      +  +    + + AT++ T H
Sbjct: 62  PYTVLDYREAFRRQVVDVFVAEYQAGRTPNPCARCNQFLKFDALLAEGEKLGATMLATGH 121

Query: 127 TFDDQLE----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                 E    T  +R +    ++   L  +   IL  L      P     ++++R+   
Sbjct: 122 YAR-LAETSSGTALLRGRDHAKDQSYFLFAIGAGILSRLRF----PVGGMNKDEVRAMAR 176

Query: 183 QRNIS 187
           +  + 
Sbjct: 177 KHGLP 181


>gi|326529305|dbj|BAK01046.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 44/203 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KD 68
            P  + V +SGG DS   L  LH+     +   +K          +E            D
Sbjct: 73  APLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIW-------FQEDFRNFWSECPWDD 125

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISE 112
           +++Y   VC ++ +   VV   +       + +++  R  R             +    E
Sbjct: 126 DLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHMISEYRNGRTPNPDVLCNTRIKFGAFLE 185

Query: 113 HAKTINATLIMTAHTFD------DQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
             + +    I + H         +  E  +V   S+ +  ++   LS +  + L      
Sbjct: 186 AIENLGFDYIASGHYAHVVHPPVENAEGPSVLQLSKDEVKDQTYFLSHLSQSQLRR---- 241

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++RS  +Q N+ 
Sbjct: 242 LLFPLGCITKDEVRSLAVQMNLP 264


>gi|222153939|ref|YP_002563116.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus uberis 0140J]
 gi|254811465|sp|B9DWD3|MNMA_STRU0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|222114752|emb|CAR43910.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus uberis 0140J]
          Length = 373

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
           + V  ++ I +  V+++                A R          E ++    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLSEYKAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHTFDDQL---ETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H    Q+   E   +   R      ++   LS +    L         P   
Sbjct: 120 GADYVATGHYA--QVRRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLGH 173

Query: 172 CRREDIRSFLLQRNIS 187
            ++ ++R    +  ++
Sbjct: 174 LQKSEVREIAERAGLA 189


>gi|325698055|gb|EGD39936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK160]
          Length = 373

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I++  V+++    +       A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGISYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H      DQ     +   R      ++   LS +    L         P   
Sbjct: 120 GADYVATGHYAQVKRDQ--DGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----PLGH 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 174 LEKPEVRAIAERAGLA 189


>gi|158319927|ref|YP_001512434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus oremlandii OhILAs]
 gi|205811148|sp|A8MEV9|MNMA_ALKOO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158140126|gb|ABW18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus oremlandii OhILAs]
          Length = 364

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 63/203 (31%), Gaps = 42/203 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRET 65
           +        +++ +SGG DS    + L         +         +    +        
Sbjct: 1   MSKAPKDTKVVIGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDESDELGYCT-------- 52

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYAL 109
           + ++   V  VC ++ I +  V+++                A R          E ++  
Sbjct: 53  SAEDYEDVRRVCDQIGIPYYSVNFEKEYWDRVFTYFLNEYKAGRTPNPDVMCNKEIKFKA 112

Query: 110 ISEHAKTINATLIMTAHTFDDQL-----ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
             +HA  + A  + T H    Q+     E   +R      ++   L+ +    L      
Sbjct: 113 FLDHAIKLGADYLATGHYA--QVDYSDGEYRLLRGVDTNKDQTYFLNQLNQYQLSKAMF- 169

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
              P    +++D+R   L   ++
Sbjct: 170 ---PVGHLQKKDLRQIALDAGLA 189


>gi|284161173|ref|YP_003399796.1| ExsB family protein [Archaeoglobus profundus DSM 5631]
 gi|284011170|gb|ADB57123.1| ExsB family protein [Archaeoglobus profundus DSM 5631]
          Length = 259

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 71/199 (35%), Gaps = 39/199 (19%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S IE ++ F+  +     ++V  SGG DS+ L      V+        +  A++V   +
Sbjct: 1   MSKIEKLKEFISKIGKNG-VVVMFSGGVDSVTLTKLCKDVIK-------RVFAVTV---V 49

Query: 63  RET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAREARYALISEHAKTIN 118
            E  +K +V Y   V   + + H ++       +             +  +I    +  +
Sbjct: 50  SEVLSKYDVEYAKSVAKEIGVDHYILEIDLLNDENFVRNDENRCYFCKKKMIRMVKEFAS 109

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL---WISRPFL--RCR 173
           A  +                   +   +G  +S + +       +    +  P++     
Sbjct: 110 AVGV-------------------ECIVEGTNVSELNEYRPGYRAVVEEGVYSPWIEVGID 150

Query: 174 REDIRSFLLQRNISWCEDP 192
           +E+IRS   +  +S  ++P
Sbjct: 151 KEEIRSIAKKLGLSVHDNP 169


>gi|325662746|ref|ZP_08151340.1| GMP synthase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331086471|ref|ZP_08335550.1| GMP synthase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325470983|gb|EGC74211.1| GMP synthase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330410529|gb|EGG89957.1| GMP synthase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 514

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +R  V    +L A+SGG DS    + L   + +      + + + VDH  L
Sbjct: 200 SFVESSIQAIRERVGNGKVLCALSGGVDSSVAAVMLSKAVGE------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|205822346|sp|B1ZGZ6|MNMA_METPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 385

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 49/211 (23%)

Query: 15  SLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET--- 65
            L  P H   ++VA+SGG DS  +   L     D     ++      DH     R+    
Sbjct: 5   DLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRKGACC 60

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYAL 109
           A  ++     V   L I H V+ +++   ++ +   A                R  ++  
Sbjct: 61  AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------Y 159
           +   A+ + A  + T H            + R   E G  L    D              
Sbjct: 121 LLGMARDLGAEALATGHYV----------ASRAQPEGGRALYRALDPARDQSYFLYATTP 170

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           +   ++  P     +++ R+   +  ++  +
Sbjct: 171 EQLAFLRFPLGERPKDETRALARELGLAVAD 201


>gi|167765362|ref|ZP_02437475.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC
           43183]
 gi|167696990|gb|EDS13569.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC
           43183]
          Length = 361

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 39/187 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                +E     ++   
Sbjct: 12  KRVLVGMSGGIDSTATCLMLRE--QGYEIVGLTMWVW----------GNEPAEARNLADS 59

Query: 80  LRIAHSVVSWKNSKPQ---TGLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   + +  Q      +   R+ R             + +++E A  +N   I 
Sbjct: 60  MGIEHHVADEREAFRQIIVQNFIDEYRQGRTPNPCVMCNPLFKFRILTEWADKLNCRYIA 119

Query: 124 TAHTFDDQLETVYMRSQRD-YAEKGMGLSGMCDTILYDLNLWISR----PFLRCRREDIR 178
           T H       T      R  Y   G          L+ L   + R    P     +  +R
Sbjct: 120 TGHY------TRLEEQNRKIYIVAGDDDKKDQSYFLWRLGQDVLRRCLFPLGTYTKMQVR 173

Query: 179 SFLLQRN 185
            +L  + 
Sbjct: 174 DYLRDKG 180


>gi|219849660|ref|YP_002464093.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aggregans DSM
           9485]
 gi|254811448|sp|B8G5F1|MNMA_CHLAD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|219543919|gb|ACL25657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroflexus aggregans DSM 9485]
          Length = 359

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 40/197 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH------CLRET---AKDEV 70
           A++LVA+SGG DS        ++L +      + + +++         LRE+   A +  
Sbjct: 2   ANVLVAMSGGVDS----SLAAALLQEAGH---QVTGVTMHLWDDDEQGLRESLCCAAEAA 54

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHA 114
                VC+ L I   V +++    +  +                    R  ++  + + A
Sbjct: 55  TSARRVCALLGIPFYVFNYQREFRRHVIEYFIRAYTHGLTPNPCVECNRMIKFRALLDRA 114

Query: 115 KTINATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + +    + T H      DD       R+     ++    S M   +       +  P  
Sbjct: 115 RALGFDAVATGHYARIVRDDCGRYQLWRAVDTEKDQ----SYMLHMLGQADLARLLFPIG 170

Query: 171 RCRREDIRSFLLQRNIS 187
              ++ +R     R + 
Sbjct: 171 EYTKQQVREMAAARCLP 187


>gi|119503231|ref|ZP_01625315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2080]
 gi|119460877|gb|EAW41968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2080]
          Length = 363

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 67/198 (33%), Gaps = 36/198 (18%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKD 68
           S   P+ ++V +SGG DS    + L            +++ +   +    D+C   TAK+
Sbjct: 2   SNPSPSTVIVGMSGGVDSSVAALLLRDQGYRVEGLFMKNWDEDDGT----DYC---TAKE 54

Query: 69  EVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISE 112
           ++     V + L I     +     W            +           RE ++    +
Sbjct: 55  DLADAEAVAASLGIKLHSANFAAEYWDGVFEHFLAEYQSGRTPNPDILCNREIKFRAFLD 114

Query: 113 HAKTINATLIMTAH--TFDDQLE-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +A  + A  I T H    DD  E T  ++      ++   L           +L+   P 
Sbjct: 115 YATELGADFIATGHYVRRDDSGERTALLKGLDPDKDQSYFLH-QVGHRELSRSLF---PV 170

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R    Q  ++
Sbjct: 171 GDLAKPEVRKIAEQAGLT 188


>gi|255264616|ref|ZP_05343958.1| GMP synthase (glutamine-hydrolyzing) [Thalassiobium sp. R2A62]
 gi|255106951|gb|EET49625.1| GMP synthase (glutamine-hydrolyzing) [Thalassiobium sp. R2A62]
          Length = 520

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 21/191 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E     +R  V    ++  +SGG DS    + LH  + D      + + + VDH  LR+ 
Sbjct: 210 EQAIDAIREQVGNKQVICGLSGGVDSSVAAVLLHEAIGD------QLTCVFVDHGLLRKG 263

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTI---- 117
             DEV  V+       +       ++               R+    L  +  +      
Sbjct: 264 EADEV--VTMFRDNYNMKLIHADEQDLFLGELDGQSDPETKRKIIGKLFIDVFQKYANEI 321

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 322 DGAEFLAQGTLYPDVIESV---SFSGGPSATIKSHHNVGGLPEKMGLKLVEPLRELFKDE 378

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 379 VRALGRELGLP 389


>gi|227530110|ref|ZP_03960159.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227349978|gb|EEJ40269.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 517

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  + D      + + I VDH  LR+    E  
Sbjct: 216 IRQEVGDKKVILGLSGGVDSSVTAVLIHKAIGD------QLTCIFVDHGLLRKN---EAD 266

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTG-------LMAAAREARYAL---ISEHAKTI-NA 119
            V   +   L +  +++    +    G            +          +E AK I +A
Sbjct: 267 QVMKALNKDLGV--NIIKVDAADRFLGKLKGVTDPETKRKIIGKEFIEVFNEEAKKIPDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +   L   +  P  +  +++ R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRKLFKDETRE 378

Query: 180 FLLQRNISW 188
              +  I  
Sbjct: 379 LGEKLGIPH 387


>gi|167628194|ref|YP_001678693.1| gmp synthase (glutamine-hydrolyzing) [Heliobacterium modesticaldum
           Ice1]
 gi|226739629|sp|B0TI09|GUAA_HELMI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|167590934|gb|ABZ82682.1| gmp synthase (glutamine-hydrolyzing) [Heliobacterium modesticaldum
           Ice1]
          Length = 513

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 66/200 (33%), Gaps = 30/200 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61
           + IE     +R+ V    +L A+SGG DS    + +H  + +      + + + VDH   
Sbjct: 202 NFIEEQVAAIRARVGSGKVLCALSGGVDSSVAALLVHRAVGE------QLTCVYVDHGFM 255

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALIS 111
            L E+     R +      L +    V             S P+T   +   E       
Sbjct: 256 RLNES----ERIIKTFRDELGMNLIAVEASERFMAKVAGVSDPETKRKSIGNEFIRVFEE 311

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E AK      ++    + D +E            + +        +  D+   +  P   
Sbjct: 312 EAAKLGQVDFLVQGTLYPDVVE------SGTSTAETIKTHHNVGGLPEDMKFELIEPLRT 365

Query: 172 CRREDIRSFLLQRNISWCED 191
             ++++R    +  +   ED
Sbjct: 366 LFKDEVREVGQRLGLP--ED 383


>gi|85715675|ref|ZP_01046655.1| GMP synthase [Nitrobacter sp. Nb-311A]
 gi|85697614|gb|EAQ35491.1| GMP synthase [Nitrobacter sp. Nb-311A]
          Length = 549

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    I +H  + D      + + + VDH  LR   KDE +
Sbjct: 245 IRAQVGKGRVICGLSGGVDSSVAAILIHEAIGD------QLTCVFVDHGMLR---KDEGK 295

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D+      I    V             + P++      R       +E      A  
Sbjct: 296 TVVDLFRHHYNIPLVHVDASKQFLDELAGVTDPESKRKTIGRLFIDVFEAEAKTIGGAEF 355

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R+  
Sbjct: 356 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPDRMNMKLVEPLRELFKDEVRALG 412

Query: 182 LQRNIS 187
            +  + 
Sbjct: 413 RELGLP 418


>gi|323442826|gb|EGB00451.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O46]
          Length = 372

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
            +VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDGNVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 173 IEKSEVRRIAEEQGL 187


>gi|311031538|ref|ZP_07709628.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. m3-13]
          Length = 371

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 46/201 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                +++ +SGG DS    + L         +         +F   +        A ++
Sbjct: 5   PKDTRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YNDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNL------WIS 166
           A  + A  + T H    Q+E       RD   K + GL    D   +   L       + 
Sbjct: 117 ALDLGADYLATGHYA--QVE------FRDGEYKMLRGLDENKDQTYFLNQLGQEQLSKVM 168

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + ++R    +  ++
Sbjct: 169 FPIGNIEKSEVREIAKRAGLA 189


>gi|225026501|ref|ZP_03715693.1| hypothetical protein EUBHAL_00750 [Eubacterium hallii DSM 3353]
 gi|224956189|gb|EEG37398.1| hypothetical protein EUBHAL_00750 [Eubacterium hallii DSM 3353]
          Length = 271

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 61/201 (30%), Gaps = 41/201 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
              E  +  +  L     + +A SGG DS  LL A    L D+        A++   CL 
Sbjct: 5   KLQEKYQKLLSYLKELDSVAIAFSGGVDSTFLLAAAKEALGDK------VIALTAKSCLF 58

Query: 63  --RETAKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHA 114
             RE+ + E     D C  L +   V+   +                 ++  +    + A
Sbjct: 59  PERESGEAE-----DFCKNLGVEQIVLDLGDTELPAFKHNPPNRCYICKKGLFEKFLQKA 113

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRC 172
           K    + +      DD              +   GL  + +       L I  P      
Sbjct: 114 KEYQMSYVAEGSNMDDL------------GDYRPGLQAITE-------LGIKSPLRAAEL 154

Query: 173 RREDIRSFLLQRNISWCEDPS 193
            + +IR    Q  +     PS
Sbjct: 155 TKAEIRELSKQMGLPTWSKPS 175


>gi|300022358|ref|YP_003754969.1| GMP synthase, large subunit [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524179|gb|ADJ22648.1| GMP synthase, large subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 515

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           VR+ V    ++  +SGG DS    + +H  + D      + + + VDH L R    DEV 
Sbjct: 211 VRAQVGNGRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRLGEADEV- 263

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V             S P+T      +       +E  K   A  +
Sbjct: 264 -VGLFRDHYNIPLVHVDASEQFLTALDGVSDPETKRKTIGKHFIDVFEAEAKKIGGADFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +++ +  P     ++++R+   
Sbjct: 323 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMHMKLVEPLRELFKDEVRALGR 379

Query: 183 QRNIS 187
           +  + 
Sbjct: 380 ELGLP 384


>gi|227363964|ref|ZP_03848065.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus reuteri MM2-3]
 gi|325683168|ref|ZP_08162684.1| GMP synthase [Lactobacillus reuteri MM4-1A]
 gi|227071019|gb|EEI09341.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus reuteri MM2-3]
 gi|324977518|gb|EGC14469.1| GMP synthase [Lactobacillus reuteri MM4-1A]
          Length = 538

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  + D      + + I VDH  LR+    E  
Sbjct: 237 IRKEVGDKKVILGLSGGVDSSVTAVLIHKAIGD------QLTCIFVDHGLLRKN---EAD 287

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NA 119
            V D +   L +  +++    +    G +       + R         + +E AK I +A
Sbjct: 288 QVMDALSRDLGV--NIIKVDAADRFLGKLEGVTDPEQKRKIIGKEFIEVFNEEAKKIKDA 345

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +   L   +  P  +  +++ R 
Sbjct: 346 DFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRKLFKDETRE 399

Query: 180 FLLQRNISW 188
              +  I  
Sbjct: 400 LGEKLGIPH 408


>gi|148544824|ref|YP_001272194.1| GMP synthase [Lactobacillus reuteri DSM 20016]
 gi|184154165|ref|YP_001842506.1| GMP synthase [Lactobacillus reuteri JCM 1112]
 gi|254800103|sp|A5VLY3|GUAA_LACRD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800104|sp|B2G994|GUAA_LACRJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148531858|gb|ABQ83857.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri DSM
           20016]
 gi|183225509|dbj|BAG26026.1| GMP synthase [Lactobacillus reuteri JCM 1112]
          Length = 517

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  + D      + + I VDH  LR+    E  
Sbjct: 216 IRKEVGDKKVILGLSGGVDSSVTAVLIHKAIGD------QLTCIFVDHGLLRKN---EAD 266

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NA 119
            V D +   L +  +++    +    G +       + R         + +E AK I +A
Sbjct: 267 QVMDALSRDLGV--NIIKVDAADRFLGKLEGVTDPEQKRKIIGKEFIEVFNEEAKKIKDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +   L   +  P  +  +++ R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRKLFKDETRE 378

Query: 180 FLLQRNISW 188
              +  I  
Sbjct: 379 LGEKLGIPH 387


>gi|329945850|ref|ZP_08293537.1| GMP synthase domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328528298|gb|EGF55276.1| GMP synthase domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 528

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  AH++  +SGG DS      +H  + D      + + I VDH  LR   +++V 
Sbjct: 217 IREQVGDAHVICGLSGGVDSSVAAALVHRAVGD------QLTCIFVDHGLLRAGEREQVE 270

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREA--------RYALISEHA 114
           +  D    + I    V             ++P+       RE         R  + +  A
Sbjct: 271 H--DYAEGMGIRVITVDETERFLSALAGVTEPEAKRKIIGREFIRSFEAAQRRVVEAVGA 328

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      ++    + D +E+             +        +  DL+  +  P     +
Sbjct: 329 EGGEIRFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLDFQLIEPLRELFK 383

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 384 DEVRTIGRELGVP 396


>gi|257790697|ref|YP_003181303.1| GMP synthase, large subunit [Eggerthella lenta DSM 2243]
 gi|257474594|gb|ACV54914.1| GMP synthase, large subunit [Eggerthella lenta DSM 2243]
          Length = 535

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 63/200 (31%), Gaps = 28/200 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S I+     +R  V    +++ +SGG DS  +       +        + + + ++H L 
Sbjct: 206 SIIDDAVAAIREQVGSDRVILGLSGGVDSSVVAALCAKAIGK------QLTCVFINHGLL 259

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R+   +EV  V     +  +    V  ++          +P+        +      +  
Sbjct: 260 RKNEPEEVEDV--FTKQFDVDFVHVHAEDRYAALLADVVEPEQKRRIIGSQFWKEFFAVA 317

Query: 114 AKTINA----TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISR 167
            +          +     + D +E+      R    K   +    + I +   +   +  
Sbjct: 318 EELAEGGRPVKYLAQGTIYPDIIES----GARKTGGKASTIKSHHNLIPFPDGVHFDLIE 373

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R+      + 
Sbjct: 374 PLDHFFKDEVRALGTALGLP 393


>gi|153815930|ref|ZP_01968598.1| hypothetical protein RUMTOR_02175 [Ruminococcus torques ATCC 27756]
 gi|331089830|ref|ZP_08338723.1| GMP synthase 2 [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145846749|gb|EDK23667.1| hypothetical protein RUMTOR_02175 [Ruminococcus torques ATCC 27756]
 gi|330403527|gb|EGG83085.1| GMP synthase 2 [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 430

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 61/194 (31%), Gaps = 20/194 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +R  V    +L+A+SGG DS  +   L   +        +   + V+H 
Sbjct: 118 MKNFIEDQVELIRRQVGDRKVLLALSGGVDSSVVAAMLIKAIGQ------QLVCVHVNHG 171

Query: 62  L-RETAKDEVRYVS--DVCSRLRIAHSVVSWKNSKPQTGLMAAAR-----EARYALISEH 113
           L R+   + V  V    + + L    +   +             R     E       E 
Sbjct: 172 LMRKNESESVVEVFRNQLHANLIYVDATERFLGKLENVSDPEEKRKIIGGEFIRVFEEEA 231

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K      +     + D +E            K +        +  DL   +  P  +  
Sbjct: 232 RKLEGIDFLGQGTIYPDIIE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLKQLF 285

Query: 174 REDIRSFLLQRNIS 187
           ++++R+  ++  + 
Sbjct: 286 KDEVRACGIELGLP 299


>gi|222147262|ref|YP_002548219.1| GMP synthase [Agrobacterium vitis S4]
 gi|254799666|sp|B9JZA3|GUAA_AGRVS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|221734252|gb|ACM35215.1| GMP synthase [Agrobacterium vitis S4]
          Length = 520

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++ A+SGG DS    + +H  + D      + + I VDH L R+    +V 
Sbjct: 216 IRAQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMRKNEAADV- 268

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V+       +    V   +         S P+T      R        E  K   A  +
Sbjct: 269 -VAMFKEHYNLHLIHVDAIDRFVGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGADFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 328 GQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPDRMNMKLVEPLRELFKDEVRVLGK 384

Query: 183 QRNIS 187
           +  + 
Sbjct: 385 ELGLP 389


>gi|306819315|ref|ZP_07453024.1| GMP synthase [Mobiluncus mulieris ATCC 35239]
 gi|304647893|gb|EFM45209.1| GMP synthase [Mobiluncus mulieris ATCC 35239]
          Length = 528

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 37/205 (18%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I++    +R  V  A ++  +SGG DS      +H  + D      + + I VDH  L
Sbjct: 208 SIIDTQVALIREQVGDAQVICGLSGGVDSSVAAALVHRAIGD------QLTCIFVDHGLL 261

Query: 63  RETAKDEVRYVSDVCSRLRI--------------------AHSVVSWKNSKPQTGLMAAA 102
           R+  K++V +  D  + + I                              +      AA 
Sbjct: 262 RKGEKEQVEH--DYAAGMGIRVKYVDESARFLTALKGVTEPEQKRKIIGREFIRSFEAAQ 319

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           R     +    A       ++    + D +E+             +        +  DL 
Sbjct: 320 RAV---IAEAGAAGKEVKFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLK 371

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P  +  ++++R+   +  + 
Sbjct: 372 FELIEPLRQLFKDEVRALGRELGVP 396


>gi|116250083|ref|YP_765921.1| GMP synthase [Rhizobium leguminosarum bv. viciae 3841]
 gi|226739710|sp|Q1MMJ7|GUAA_RHIL3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115254731|emb|CAK05805.1| putative GMP synthase [glutamine hydrolysing] [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 520

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE  
Sbjct: 216 IRAQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEAA 266

Query: 72  YVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      L + H   + +        S P+T      R        E  K   A  
Sbjct: 267 GVVAMFREHYNLHLLHVDAADRFIGELEGVSDPETKRKIIGRLFIETFEEEARKLGGADF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + + +  P     ++++R+  
Sbjct: 327 LGQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  + 
Sbjct: 384 RELGLP 389


>gi|332798405|ref|YP_004459904.1| tRNA-specific 2-thiouridylase mnmA [Tepidanaerobacter sp. Re1]
 gi|332696140|gb|AEE90597.1| tRNA-specific 2-thiouridylase mnmA [Tepidanaerobacter sp. Re1]
          Length = 366

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 63/203 (31%), Gaps = 52/203 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---------------RET 65
            + VA+SGG DS      L     +          I +   +                  
Sbjct: 5   KVAVAMSGGVDSSVCAYLLKEQGYE---------VIGITMQIFDDAPRKVEAKEGGCSSE 55

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYAL 109
           A  + R V     +L I H VV+ K+   +  +   A E                 ++  
Sbjct: 56  AVQDARLV---AEKLGIPHYVVNLKHCFNEKVIKYFANEYLSGKTPNPCIVCNKYLKFTE 112

Query: 110 ISEHAKTINATLIMTAHTF----DDQLETVYMRSQRDY-AEKGMGLSGMCDTILYDLNLW 164
           + + A  + A  + T H      DD L    ++   D   ++   L G+    L      
Sbjct: 113 LLKAAFELGAFYLATGHYARVEYDDTLSRYILKKSVDSDKDQSYVLYGLTQRQLE----H 168

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     +++IR    +  +S
Sbjct: 169 VLFPLGNYTKKEIRQIAQKIGLS 191


>gi|332877855|ref|ZP_08445593.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684150|gb|EGJ57009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 378

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 77/239 (32%), Gaps = 71/239 (29%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDHCLRETAKDEVRY-- 72
             +LV +SGG DS  + + L     +          +           R+ A     Y  
Sbjct: 6   KKVLVGMSGGIDSSAVCLMLLDEGYEVVGVTMRVWDLP----------RQFADTGQEYPD 55

Query: 73  ----VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
                  + +RL IAH V   + +     +        A R            ++ +++E
Sbjct: 56  FIQDARALAARLGIAHYVADERTAFKDIVVRNFVDEYLAGRTPNPCVMCNPAFKFRVLAE 115

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM--GLSGMCDT--ILYDLNLWISR- 167
            A  +    I T H         Y+R + +    G+  G+ G  D    L+ L   +   
Sbjct: 116 WADKLGCDYIATGH---------YVRVKEEGGRYGLYCGVDGKKDQSYFLWRLGQDVLSR 166

Query: 168 ---PFLRCRREDIRSFLLQRNISW-----------CEDPSNTDDRFERVRVRRFVRDID 212
              P    R+ED+R +L ++                 D       + R  +R  V D+D
Sbjct: 167 CIFPLGALRKEDVRGYLARKGFEMKARGGESMEVCFIDK-----DY-REFLREQVPDLD 219


>gi|319892675|ref|YP_004149550.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162371|gb|ADV05914.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|323464287|gb|ADX76440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus pseudintermedius ED99]
          Length = 370

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 69/196 (35%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHALKL 118

Query: 118 NATLIMTA------HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T       H  D  +E   +R   +  ++   L+ + +  L      +  P   
Sbjct: 119 GADYVATGHYARVRHHEDGSVE--MLRGVDNNKDQTYFLNQLTEAQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             ++ +R   L+++++
Sbjct: 173 IDKQKVREIALEQDLA 188


>gi|288574376|ref|ZP_06392733.1| ExsB family protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570117|gb|EFC91674.1| ExsB family protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 271

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 33/178 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + +LV+ SGG DS  +L  L  ++ D +F  + F +      L      E      +C  
Sbjct: 25  SSVLVSFSGGVDSSAILALLAGIMPDGTFHSVLFDSF-----LHPE--KERERAVSLCRD 77

Query: 80  LRIAHSVVSW------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L +   V+        +      G  A  +E R   I    + +    I+     DD   
Sbjct: 78  LGVDLRVLPGPELSDDRVMGNLEGRCAFCKELRICEILRLKEEMGIDTIVDGTNHDDL-- 135

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWC 189
                         +G S +           +  P       +  +R    + +I W 
Sbjct: 136 ---------QDPTRLGNSVL-------NRYPVFSPLAEAGLSKRRVRDLAKELDIPWW 177


>gi|242242895|ref|ZP_04797340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis W23144]
 gi|242233670|gb|EES35982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis W23144]
          Length = 372

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIRRHEDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    ++N++
Sbjct: 173 VEKSEVRRIAEEQNLA 188


>gi|170751444|ref|YP_001757704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium radiotolerans JCM 2831]
 gi|205816882|sp|B1LV15|MNMA_METRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170657966|gb|ACB27021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 384

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 46/215 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
            +   ++VA+SGG DS  +   L     D     ++      DH     R+    A  ++
Sbjct: 10  PHETRVVVAMSGGVDSSVVAGLLKRQGFDVVGVTLQLY----DHGAASHRKGACCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
                    L I H V+ +++      +   A                R  ++  +   A
Sbjct: 66  HDARAAAEHLGIPHYVLDYEDRFRDEVIEKFAESYLAGETPIPCVECNRTVKFRDLLGLA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLW 164
           + ++A  + T H            + R     G  L    D              +   +
Sbjct: 126 RDLDADALATGHYV----------ASRALPGGGRALHRALDPARDQSYFLYATTAEQLDF 175

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +  P     + + R+   +  +S  E P + D  F
Sbjct: 176 LRFPLGEMEKTETRALAKELGLSLAEKPDSQDICF 210


>gi|254449475|ref|ZP_05062912.1| GMP synthase (glutamine-hydrolyzing) [Octadecabacter antarcticus
           238]
 gi|198263881|gb|EDY88151.1| GMP synthase (glutamine-hydrolyzing) [Octadecabacter antarcticus
           238]
          Length = 499

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V    ++  +SGG DS      LH  + D      + + + VDH  LR   A D V
Sbjct: 195 IREQVGDKQVICGLSGGVDSSVTAALLHEAIGD------QLTCVFVDHGLLRLNEADDVV 248

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------REARYALISEHAKTI-----NA 119
               D      +   V+     +   G +         R+    L  +  +        A
Sbjct: 249 AMFRD-----NMNLKVIYADEKELFLGALEGQSDPETKRKIIGGLFIDVFQKYANEIEGA 303

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V   S        +        +   + L +  P     ++++R+
Sbjct: 304 EFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRA 360

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 361 LGRELGLP 368


>gi|293605939|ref|ZP_06688309.1| GMP synthase [Achromobacter piechaudii ATCC 43553]
 gi|292815726|gb|EFF74837.1| GMP synthase [Achromobacter piechaudii ATCC 43553]
          Length = 530

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 63/194 (32%), Gaps = 23/194 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 212 VEEAVARIREQVGTDEVILGLSGGVDSSVAAALIHKAIGD------QLTCVFVDHGLLR- 264

Query: 65  TAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHA 114
              DE + V       + +    V             + P+       RE       +  
Sbjct: 265 --LDEGKQVMQTFAENMGVKIIHVDATAQFMGKLSGVADPEAKRKIIGREFVEVFQEQAG 322

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  +A  +     + D +E+      +      +        +   LNL +  P     +
Sbjct: 323 KQQSAKWLAQGTIYPDVIES---AGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFK 379

Query: 175 EDIRSFLLQRNISW 188
           +++R   +   +  
Sbjct: 380 DEVRELGVALGLPP 393


>gi|239947878|ref|ZP_04699631.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922154|gb|EER22178.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 370

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           + I+VA+SGG DS  +   LH    +     ++      DH +         A  ++   
Sbjct: 14  STIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIYDA 69

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAKTI 117
             V ++L I H V+ +++   ++ +                    +  ++  + + A+ +
Sbjct: 70  KMVANKLGIPHYVLGYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTAREL 129

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L     T   +   ++S P    
Sbjct: 130 GADKLATGHYVRKINGDNGAE--LHTGLDPAKDQSYFLF----TTTKEQLEYLSFPLGGL 183

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            +++ R    +  +   + P + D  F
Sbjct: 184 TKDETRKLASKFGLEVADKPDSQDICF 210


>gi|332799632|ref|YP_004461131.1| hypothetical protein TepRe1_1688 [Tepidanaerobacter sp. Re1]
 gi|332697367|gb|AEE91824.1| Conserved hypothetical protein CHP00268 [Tepidanaerobacter sp. Re1]
          Length = 277

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 41/203 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    + +++  +++L     ++VA SGG DS  LL      L     G+    A++   
Sbjct: 1   MLEQKLSNLKQRIQAL---KQVVVAFSGGVDSTFLLKVCMDAL-----GRDHVLAVTA-- 50

Query: 61  CLRETAKDEVRY-----VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR-EARYAL--ISE 112
             R  A  E  +     ++++ +  +I   +                    RY      +
Sbjct: 51  --RSGAFSEKEFIESQGLANLLNARQIIIELDELNIPGILDNPPERCYFCKRYLFNKFID 108

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--L 170
            A+      ++    F D  E                       ++    L I  P   +
Sbjct: 109 IAREQGYDFVVEGSNFSD-TEDF------------------RPGMVAIQELGIISPLKEV 149

Query: 171 RCRREDIRSFLLQRNISWCEDPS 193
              +++IR    +  +     PS
Sbjct: 150 GLTKDEIRKASKEMGLPTWNKPS 172


>gi|307594745|ref|YP_003901062.1| GMP synthase (glutamine-hydrolyzing) [Vulcanisaeta distributa DSM
           14429]
 gi|307549946|gb|ADN50011.1| GMP synthase (glutamine-hydrolyzing) [Vulcanisaeta distributa DSM
           14429]
          Length = 374

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 27/197 (13%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L+ I+     ++SL     +  A+SGG DS    + +   + DR        A+ +D 
Sbjct: 1   MELAWIDKAVEGIKSLPIKCAVA-AISGGVDSTTAAVLVRRAIGDR------LRAVFIDT 53

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAA------REARYALIS 111
              R     E  +V ++   + +   V+  ++   +   GL  A       RE  Y ++S
Sbjct: 54  GFMRLN---EPAHVKELLRDV-LPIEVIDARDRFYREMLGLSDAEEKRIRFREVFYEVLS 109

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPFL 170
             A+      ++      D +ET      R   +    +        +      +  P  
Sbjct: 110 GVAREYGCDWLVQGTIAPDWIET------RGGIKTQHNVLEQIGIDTVSKYGFKLIEPLR 163

Query: 171 RCRREDIRSFLLQRNIS 187
              ++ +R       + 
Sbjct: 164 ELYKDQVRELAKALGVP 180


>gi|296109387|ref|YP_003616336.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus
           infernus ME]
 gi|295434201|gb|ADG13372.1| Thiamine biosynthesis protein-like protein [Methanocaldococcus
           infernus ME]
          Length = 241

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 85/238 (35%), Gaps = 35/238 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +++A SGG DS+ L I L  V   +             H  +E           + 
Sbjct: 18  KGKKVILAFSGGVDSLILAILLSRVAKVKCVFIKTPYI----HKYKEEDA------KALA 67

Query: 78  SRLRIAHSVVSWKNSKPQTGL-MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
            +  +   ++        + L     ++  ++++++  + ++  L++    +DD  E   
Sbjct: 68  KKFNLDLEILYVDKIVENSKLRCYHCKKMFFSILNKMKEELSYDLVVDGTHYDDLFE--- 124

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRSFLLQRNISWCEDPSN 194
                       GL  + +       L IS PF     R+ DI       NI+     + 
Sbjct: 125 ---------DRPGLKALEE-------LNISSPFAEFKVRKGDILKLAKDLNIN-IPKETC 167

Query: 195 TDDRFERVRVRRFVRDIDLHALYLK--MKKFQDLRVKVNNAVAMLIPKYLTVHMRSII 250
              RF+R    + +R ++    +L+  +K    LR + + A+  +       H R +I
Sbjct: 168 LLTRFDRDVDEKELRKVEALEEFLRKFLKGSIRLRDRGDKAILEIEDIKNFEHNREVI 225


>gi|259503048|ref|ZP_05745950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus antri DSM 16041]
 gi|259168914|gb|EEW53409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus antri DSM 16041]
          Length = 377

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 45/197 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAKTI 117
           + V +++ I +  V+++        K         R          E ++    E+A  +
Sbjct: 60  AKVAAKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119

Query: 118 NATLIMTAHTFDDQLETVY-------MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  + T H  D              M   R   +       +   + Y     +  P  
Sbjct: 120 GADYVATGHYAD------LKRDADGRMHLMRAADQHKDQTYFLSQ-LDYHQLDKVLFPLA 172

Query: 171 RCRREDIRSFLLQRNIS 187
           R  +  IR    +  ++
Sbjct: 173 RYTKPQIREIAKEAGLA 189


>gi|212638074|ref|YP_002314594.1| GMP synthase [Anoxybacillus flavithermus WK1]
 gi|212559554|gb|ACJ32609.1| GMP synthetase [Anoxybacillus flavithermus WK1]
          Length = 511

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 20/192 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+     +R LV    +L A+SGG DS    + +H  + D      + + I VDH  L
Sbjct: 201 SFIDHEVRKIRELVGDKKVLCALSGGVDSSVAAVLVHRAIGD------QLTCIFVDHGLL 254

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAK 115
           R+   D V         + +       +        S P+        E  Y    E AK
Sbjct: 255 RKGEADSVMKTFREGFHMNVIKVDAKERFLNKLKGVSDPEQKRKIIGNEFIYVFDDEAAK 314

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 ++    + D +E            + +        +  D+   +  P     ++
Sbjct: 315 LDGIEFLVQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMKFKLIEPLNTLFKD 368

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  I 
Sbjct: 369 EVRALGTELGIP 380


>gi|300771093|ref|ZP_07080969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761763|gb|EFK58583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 363

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 66/239 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYV--- 73
             +LVA+SGG DS    + LH           +   I++   D+     +  E       
Sbjct: 5   GRVLVAMSGGVDSSVAAVMLHE-------QGYEVIGITMKTWDYASSGGSSKETGCCSLD 57

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
                  +       H ++  ++      +        A R            ++  + +
Sbjct: 58  SINDARALAVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIK 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQ---RDYAEKGMGLSGMCDTILYDLNLW-ISR- 167
            A  ++   I T H  +       +R     R    KG   +     +L+ +    ++R 
Sbjct: 118 RANKLDCEFIATGHYAN-------IRLHENGRHVISKGRDENKDQSYVLWGVTQENLART 170

Query: 168 --PFLRCRREDIRSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDID 212
             P     +++IR                   I +  D     + + R  +R  + D+D
Sbjct: 171 QFPLGSFTKKEIRQMAADMGQMELANKSESYEICFVPD-----NDY-RAFLRHKMPDLD 223


>gi|227540270|ref|ZP_03970319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227239914|gb|EEI89929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 363

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 72/239 (30%), Gaps = 66/239 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYV--- 73
             +LVA+SGG DS    + LH           +   I++   D+     +  E       
Sbjct: 5   GRVLVAMSGGVDSSVAAVMLHE-------QGYEVIGITMKTWDYASSGGSSKETGCCSLD 57

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
                  +       H ++  ++      +        A R            ++  + +
Sbjct: 58  SINDARALAVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIK 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQ---RDYAEKGMGLSGMCDTILYDLNLW-ISR- 167
            A  ++   I T H  +       +R     R    KG   +     +L+ +    ++R 
Sbjct: 118 RANKLDCEFIATGHYAN-------IRLHENGRHVISKGRDENKDQSYVLWGVTQENLART 170

Query: 168 --PFLRCRREDIRSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDID 212
             P     +++IR                   I +  D     + + R  +R  + D+D
Sbjct: 171 QFPLGSFTKKEIRQMAADMGQMELANKSESYEICFVPD-----NDY-RAFLRHKMPDLD 223


>gi|313637741|gb|EFS03100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri FSL S4-171]
          Length = 371

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +    L      +  P    
Sbjct: 121 GADFVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQEQLQK----VMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  ++
Sbjct: 175 EKKEVREIATKAGLA 189


>gi|289434792|ref|YP_003464664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171036|emb|CBH27578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|313633159|gb|EFS00043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria seeligeri FSL N1-067]
          Length = 371

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +    L      +  P    
Sbjct: 121 GADFVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQEQLQK----VMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  ++
Sbjct: 175 EKKEVREIATKAGLA 189


>gi|223044127|ref|ZP_03614166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus capitis SK14]
 gi|314933788|ref|ZP_07841153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus caprae C87]
 gi|222442521|gb|EEE48627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus capitis SK14]
 gi|313653938|gb|EFS17695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus caprae C87]
          Length = 372

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIRRHEDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +++++
Sbjct: 173 IEKSEVRRIAEEQDLA 188


>gi|326792395|ref|YP_004310216.1| GMP synthase, large subunit [Clostridium lentocellum DSM 5427]
 gi|326543159|gb|ADZ85018.1| GMP synthase, large subunit [Clostridium lentocellum DSM 5427]
          Length = 513

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVETTIKALRKKVGNGKVLCALSGGVDSSVAAVMLSKAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|260433934|ref|ZP_05787905.1| GMP synthase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417762|gb|EEX11021.1| GMP synthase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 519

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    I +H  + D      + + + VDH  LR+    EV 
Sbjct: 215 IREQVGDKKVICGLSGGVDSSVAAILIHEAIGD------QLTCVFVDHGLLRKNEAQEV- 267

Query: 72  YVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
            VS       I          +             R+    L  +  +        A  +
Sbjct: 268 -VSMFRDNYNIQLIHADESELFLGELEGVSDPETKRKIIGKLFIDVFQKHADTIEGAEFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 327 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGR 383

Query: 183 QRNISW 188
           +  +  
Sbjct: 384 ELGLPP 389


>gi|167629936|ref|YP_001680435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Heliobacterium modesticaldum Ice1]
 gi|205816855|sp|B0TFA7|MNMA_HELMI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167592676|gb|ABZ84424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Heliobacterium modesticaldum Ice1]
          Length = 385

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 64/221 (28%), Gaps = 57/221 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD----------------RSFGKIKFSAISVDHCLRET 65
           ++VA+SGG DS      L     D                   G    SA+         
Sbjct: 5   VVVAMSGGVDSSVTAALLLEQGYDVIGVTLQIWPKDAPEGAEGGCCSLSAV--------- 55

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RYALISE 112
             ++ + V    S+L + H V+++++      +    RE              R      
Sbjct: 56  --EDAKRV---ASKLGVPHYVLNFRDYFETEVIEYFGREYLAGQTPNPCIRCNRVIKFEG 110

Query: 113 HAKT---INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             +    + A  + T H      D   T   R  R           + +     L+  + 
Sbjct: 111 LLQKSLALGAAKVATGHYARIEQDSA-TGRYRLGRGIDANKDQSYALFNMTQEQLSRTLF 169

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFER 201
            P     + +IR    Q  ++    P +       D+ + R
Sbjct: 170 -PLGGFTKPEIREKAAQLGLAVASKPDSQEICFIPDNDYRR 209


>gi|163751230|ref|ZP_02158458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella benthica KT99]
 gi|161328944|gb|EDQ00018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella benthica KT99]
          Length = 376

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 33/191 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A D+++ 
Sbjct: 12  KKVIVGMSGGVDSSVSAYLLLKQGYRVEGLFMK--------NWEEDDTDEYCAAADDLKD 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    V++             A  +  R               A +    +
Sbjct: 64  AQAVCDKLGIKLHTVNFAAEYWDKVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADE 123

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            ++A  I   H      ET   R  R           +  T+ ++       P     + 
Sbjct: 124 ILDADYIAMGHYVRRCDETGQSRMLRGVDGNKDQSYFLY-TLSHEQIARSLFPVGELEKS 182

Query: 176 DIRSFLLQRNI 186
           ++R    +  +
Sbjct: 183 EVREIAKEMGL 193


>gi|224541534|ref|ZP_03682073.1| hypothetical protein CATMIT_00704 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525571|gb|EEF94676.1| hypothetical protein CATMIT_00704 [Catenibacterium mitsuokai DSM
           15897]
          Length = 514

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   + +      + + + VDH  L
Sbjct: 200 SFVEESIKAIREKVGDGKVLCALSGGVDSSVAAVLLSKAIGN------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|307327693|ref|ZP_07606877.1| GMP synthase, large subunit [Streptomyces violaceusniger Tu 4113]
 gi|306886591|gb|EFN17593.1| GMP synthase, large subunit [Streptomyces violaceusniger Tu 4113]
          Length = 565

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 17/195 (8%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E     +R  V     +  +SGG DS      +   + D      + + + VDH L 
Sbjct: 245 NVVEESVAAIREQVGTKRAICGLSGGVDSAVAAALVQKAIGD------QLTCVYVDHGLM 298

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   + ++          R+          +   A 
Sbjct: 299 RKGESEQVEKDFVAATGVQLKVVEAEERFLSALAGVSDPEEKRKIIGREFIRVFEQAQAE 358

Query: 121 LIMTAHTFDDQLE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRC 172
           L+  A    + +E     T+Y          G            +  D+   +  P  R 
Sbjct: 359 LVAEAGAAGEDVEFLVQGTLYPDVVESGGGSGTANIKSHHNVGGLPDDIEFQLVEPLRRL 418

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 419 FKDEVRMVGQELGLP 433


>gi|224023564|ref|ZP_03641930.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM
           18228]
 gi|224016786|gb|EEF74798.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM
           18228]
          Length = 378

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 50/201 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR------------ET 65
               +LV +SGG DS  + I L            +   ++    +R            + 
Sbjct: 5   KDKRVLVGMSGGIDSSAVCIMLQE-------QGYEVVGVT----MRTWDVPSHFSTPGQE 53

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAARE----------ARYAL 109
             DEV     + +RL I H V   +    Q             R            +  +
Sbjct: 54  QPDEVLEAQALAARLGIEHHVADVREEFRQVIVKYFIDEYMRGRTPNPCVMCNPLFKERI 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLET-----VYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           + E A   +   I T H    QLE        +       ++   L  +   IL  +   
Sbjct: 114 LCEWADRTDCAWIATGHYC--QLEDRNGYRYILTGDDPTKDQSYFLWKLPQEILRRM--- 168

Query: 165 ISRPFLRCRREDIRSFLLQRN 185
              P     ++++R++L ++ 
Sbjct: 169 -IFPLGGMTKQEVRAYLAEKG 188


>gi|169338047|ref|ZP_02621467.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum C str. Eklund]
 gi|169295231|gb|EDS77364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum C str. Eklund]
          Length = 350

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 39/190 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + V +SGG DS      L     D     +K            ++  +V      V  
Sbjct: 6   KKVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKV-----------SSDLDVSEDAKKVAE 54

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLI 122
           +L I + V+       +  + + A E                 ++  + E AK + A  I
Sbjct: 55  KLDIPYYVIDLTEEFKKRVINSFAEEYLQGRTPNPCAVCNKYIKFGAMLEKAKELGADYI 114

Query: 123 MTAHTFDDQLET-----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            T H    ++E      + + ++ D  ++    + M  ++  D+   +  P     +  I
Sbjct: 115 ATGHYA--RIEEHNGRILVLNAKDDKKDQ----TYMFYSLTQDVLKHVLMPCGEYTKVQI 168

Query: 178 RSFLLQRNIS 187
           R       I 
Sbjct: 169 REIAKNIGIE 178


>gi|313889493|ref|ZP_07823139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122105|gb|EFR45198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 373

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLE------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+E         +R   +  ++   LS +    L         P
Sbjct: 117 LNLGADYVATGHYA--QVERDSDGRVHMLRGVDNGKDQTYFLSQLSQEQLQKT----LFP 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++  +R    + +++
Sbjct: 171 LGHLQKSQVREIAARADLA 189


>gi|55380003|ref|YP_137853.1| GMP synthase subunit B [Haloarcula marismortui ATCC 43049]
 gi|57012760|sp|Q5UX56|GUAAB_HALMA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|55232728|gb|AAV48147.1| GMP synthase [Haloarcula marismortui ATCC 43049]
          Length = 305

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 64/174 (36%), Gaps = 20/174 (11%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVC 77
             H ++ +SGG DS       +  + D      + +A+ VD  L R+   DE+R   D  
Sbjct: 21  DKHAVIGLSGGVDSSTAAALAYEAIGD------QLTAVYVDTGLMRKGETDEIRETFDYM 74

Query: 78  SRLRIAHSVVSWKNS-KPQTGLMAAAREARYAL---ISEHAKTINATLIMTAHTFDDQLE 133
             LRI  +   + +  + +T                    A+ ++A  ++    + D++E
Sbjct: 75  DSLRIVEAQDRFLDELEGETDPEEKRHIIGEQFIREFETVAREVDADYLVQGTIYPDRIE 134

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                      +    + G+ + I +D    I  P     ++++R      ++ 
Sbjct: 135 ------SEGTIKSHHNVGGLPERIDFDG---IVEPMRDLYKDEVREVARALDLE 179


>gi|331082285|ref|ZP_08331411.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400771|gb|EGG80372.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 361

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 48/204 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRET 65
               ++V +SGG DS      L                 + +  + +         L   
Sbjct: 2   SGKKVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCC---GLS-- 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYAL 109
           A D+ R V+ +   L I + V++++    +                    A  R  ++  
Sbjct: 57  AVDDARRVAQI---LDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWES 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLETV------YMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           + + +  I A  I T H    ++E +         S     ++   L  +    L    +
Sbjct: 114 LLKRSLDIGADYIATGHYA--RVEQLPNGRYAIRNSVTAKKDQTYALYNLTQEQLSRTLM 171

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
               P     +E+IR    +  + 
Sbjct: 172 ----PVGEYTKEEIRRIAQEAGLP 191


>gi|319898474|ref|YP_004158567.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella clarridgeiae 73]
 gi|319402438|emb|CBI75979.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella clarridgeiae 73]
          Length = 409

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 61/213 (28%), Gaps = 54/213 (25%)

Query: 12  FVRSLVYPAH-----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           F+ SL  P H     I+VA+SGG DS  +   L     D     ++      DH     R
Sbjct: 2   FLNSLDLPGHPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLY----DHGAATHR 57

Query: 64  ET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------- 109
                A  ++     V   L + H ++ ++    +  +   A    YA            
Sbjct: 58  VGACCAGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAES--YAHGETPVPCVSCN 115

Query: 110 -------ISEHAKTINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGM 153
                  +   A  + A  + T H                    R      ++   L   
Sbjct: 116 QTVKFADLLATAYELGADALATGHYIRSRVHGAHR------ALFRPLDADRDQSYFLFAT 169

Query: 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
               +     ++  P     ++ +R    +  +
Sbjct: 170 TQEQI----DYLRFPLGDLSKDRVREIATEMGL 198


>gi|260588149|ref|ZP_05854062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blautia hansenii DSM 20583]
 gi|260541676|gb|EEX22245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blautia hansenii DSM 20583]
          Length = 361

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 48/204 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRET 65
               ++V +SGG DS      L                 + +  + +         L   
Sbjct: 2   SGKKVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCC---GLS-- 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYAL 109
           A D+ R V+ +   L I + V++++    +                    A  R  ++  
Sbjct: 57  AVDDARRVAQI---LDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWES 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLETV------YMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           + + +  I A  I T H    ++E +         S     ++   L  +    L    +
Sbjct: 114 LLKRSLDIGADYIATGHYA--RVEQLPNGRYAIRNSVTAKKDQTYALYNLTQEQLSRTLM 171

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
               P     +E+IR    +  + 
Sbjct: 172 ----PVGEYTKEEIRRIAQEAGLP 191


>gi|126736304|ref|ZP_01752046.1| GMP synthase [Roseobacter sp. CCS2]
 gi|126714125|gb|EBA10994.1| GMP synthase [Roseobacter sp. CCS2]
          Length = 519

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 23/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     ++  V  AH++ A+SGG DS      LH  + D      + + + VDH L R  
Sbjct: 209 EQAIDAIKEQVGDAHVICALSGGVDSSVAAALLHEAIGD------QLTCVFVDHGLLRLN 262

Query: 66  AKDEVRYVSDVCS---RLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI--- 117
              E   V  +      L++ H+  S  +             R+    L  +  +     
Sbjct: 263 ---EAEEVVGMFRDNMNLKVIHADESDLFLGELEGQSDPETKRKIIGKLFIDVFQKYADQ 319

Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +     + D +E+V   S        +        +   + L +  P     ++
Sbjct: 320 IEDAAFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKD 376

Query: 176 DIRSFLLQRNIS 187
           ++R+  ++  + 
Sbjct: 377 EVRALGVELGLP 388


>gi|269977053|ref|ZP_06184027.1| GMP synthase [glutamine-hydrolyzing] [Mobiluncus mulieris 28-1]
 gi|307700094|ref|ZP_07637142.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Mobiluncus mulieris FB024-16]
 gi|269934884|gb|EEZ91444.1| GMP synthase [glutamine-hydrolyzing] [Mobiluncus mulieris 28-1]
 gi|307614744|gb|EFN93965.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Mobiluncus mulieris FB024-16]
          Length = 528

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 37/205 (18%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I++    +R  V  A ++  +SGG DS      +H  + D      + + I VDH  L
Sbjct: 208 SIIDTQVALIREQVGDAQVICGLSGGVDSSVAAALVHRAVGD------QLTCIFVDHGLL 261

Query: 63  RETAKDEVRYVSDVCSRLRI--------------------AHSVVSWKNSKPQTGLMAAA 102
           R+  K++V +  D  + + I                              +      AA 
Sbjct: 262 RKGEKEQVEH--DYAAGMGIRVKYVDESARFLTALKGVTEPEQKRKIIGREFIRSFEAAQ 319

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           R     +    A       ++    + D +E+             +        +  DL 
Sbjct: 320 RAV---IAEAGAAGKEVKFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLK 371

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P  +  ++++R+   +  + 
Sbjct: 372 FELIEPLRQLFKDEVRALGRELGVP 396


>gi|227494865|ref|ZP_03925181.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831317|gb|EEH63700.1| GMP synthase (glutamine-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 523

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 31/202 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+     +R  V  AH++ A+SGG DS      +H  + D      + + I VDH  L
Sbjct: 203 SIIDEQVARIREQVGEAHVICALSGGVDSSVAAALVHKAVGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARY---ALI 110
           R   +++V    D    + I    V             S+P+       RE      A  
Sbjct: 257 RAGEREQVE--EDYAKGMGIRVITVDESERFLTALAGVSEPEEKRKIIGREFIRSFEAAQ 314

Query: 111 SEHAKTINAT-----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
               + + AT      ++    + D +E+             +        +  DL   +
Sbjct: 315 RRVIEEVGATGAEIKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLKFDL 369

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     ++++R+   +  + 
Sbjct: 370 VEPLRTLFKDEVRAIGRELGVP 391


>gi|227876039|ref|ZP_03994158.1| GMP synthase (glutamine-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843338|gb|EEJ53528.1| GMP synthase (glutamine-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 528

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 37/205 (18%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I++    +R  V  A ++  +SGG DS      +H  + D      + + I VDH  L
Sbjct: 208 SIIDTQVALIREQVGDAQVICGLSGGVDSSVAAALVHRAVGD------QLTCIFVDHGLL 261

Query: 63  RETAKDEVRYVSDVCSRLRI--------------------AHSVVSWKNSKPQTGLMAAA 102
           R+  K++V +  D  + + I                              +      AA 
Sbjct: 262 RKGEKEQVEH--DYAAGMGIRVKYVDESARFLTALKGVTEPEQKRKIIGREFIRSFEAAQ 319

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           R     +    A       ++    + D +E+             +        +  DL 
Sbjct: 320 RAV---IAEAGAAGKEVKFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLK 371

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P  +  ++++R+   +  + 
Sbjct: 372 FELIEPLRQLFKDEVRALGRELGVP 396


>gi|23098171|ref|NP_691637.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanobacillus iheyensis HTE831]
 gi|44887959|sp|Q8CXK8|GUAA_OCEIH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|22776396|dbj|BAC12672.1| GMP synthase (glutamine-hydrolyzing) [Oceanobacillus iheyensis
           HTE831]
          Length = 511

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L A+SGG DS  +   +H  + D      + + I VDH  LR+   D+V 
Sbjct: 210 IQETVGDRKVLCALSGGVDSSVVAALIHKAIGD------QLTCIFVDHGLLRKNEGDDVM 263

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V       ++    V  K+         S P+        E  Y    E +K  +   +
Sbjct: 264 KV--FAEDFQMNIIKVDAKDRFLFKLEGVSDPELKRKIIGNEFIYVFDDEASKLKDIDFL 321

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R    
Sbjct: 322 AQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFTLIEPLNTLFKDEVRELGS 375

Query: 183 QRNIS 187
           Q  + 
Sbjct: 376 QLGVP 380


>gi|323143288|ref|ZP_08077981.1| TIGR00268 family protein [Succinatimonas hippei YIT 12066]
 gi|322416969|gb|EFY07610.1| TIGR00268 family protein [Succinatimonas hippei YIT 12066]
          Length = 270

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 54/176 (30%), Gaps = 30/176 (17%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
                 +A SGG+DS  LL  L  +          F A +    L    + E +   ++C
Sbjct: 16  AKKRTALAFSGGADSTLLLFELSKLCRKEGGSVYAFYAST---ALNP--RLEAKEALNIC 70

Query: 78  SRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               ++  ++                   ++  ++ I+  A+     +I      DD  E
Sbjct: 71  QSFNVSLEIIEISVLEYIKNNPINRCYLCKKHIFSAIANKARQRKCDVIFDGTNSDDLKE 130

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP--FLRCRREDIRSFLLQRNIS 187
                          G+  + +       L I  P   +   + ++R  L   +I 
Sbjct: 131 ------------YRPGIKALHE-------LDILSPLALMNINKTEVRHILKNHDIK 167


>gi|331092233|ref|ZP_08341061.1| GMP synthase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330401665|gb|EGG81244.1| GMP synthase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 513

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVEKSIEAIREKVGDGKVLCALSGGVDSSVAAVMLSKAVGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|283955448|ref|ZP_06372946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793075|gb|EFC31846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 338

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 27/182 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L ++  +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKNLGHEIIGCYMKL------HGKPNYHEENIKKVEKVANFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK++    + T
Sbjct: 56  QIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H    +LE       +   ++    S    +   +   ++  P    ++ED++ F    
Sbjct: 116 GHYA--RLEN---NLIKTALDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTI 170

Query: 185 NI 186
            I
Sbjct: 171 EI 172


>gi|67538792|ref|XP_663170.1| hypothetical protein AN5566.2 [Aspergillus nidulans FGSC A4]
 gi|74595047|sp|Q5B1L4|GUAA_EMENI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|40743081|gb|EAA62271.1| hypothetical protein AN5566.2 [Aspergillus nidulans FGSC A4]
 gi|259484974|tpe|CBF81652.1| TPA: GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)(Glutamine
           amidotransferase)(GMP synthetase)
           [Source:UniProtKB/Swiss-Prot;Acc:Q5B1L4] [Aspergillus
           nidulans FGSC A4]
          Length = 533

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 71/200 (35%), Gaps = 40/200 (20%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRETAKDEV 70
           +RSLV P   +L AVSGG DS      +   + DR      F A+ VD  C+R     E 
Sbjct: 220 IRSLVGPDGQVLGAVSGGVDSTVAAKLMTEAIGDR------FHAVLVDNGCMRLN---EC 270

Query: 71  RYVSDVC-SRLRIAHSVVSW--------------KNSKPQTG------LMAAAREARYAL 109
             V +V   +L I  +VV                +  +   G          AR+     
Sbjct: 271 EKVQEVLQEQLGINLTVVDAGEQFLAGLKGVHDPEQKRKFIGGKFIDVFEDEARK----- 325

Query: 110 ISEHAKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
               AK+          T   D +E++  +      +    + G+ + ++    L +  P
Sbjct: 326 --IEAKSNGKVEWFLQGTLYPDVIESISFKGPSQTIKTHHNVGGIAERLMRGHGLKLIEP 383

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R    Q  IS 
Sbjct: 384 LRELFKDEVRELGRQLGISP 403


>gi|297720175|ref|NP_001172449.1| Os01g0598900 [Oryza sativa Japonica Group]
 gi|255673426|dbj|BAH91179.1| Os01g0598900 [Oryza sativa Japonica Group]
          Length = 525

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 19/147 (12%)

Query: 79  RLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           +  +   ++S+K+           +             R   +   A  +    I+T H 
Sbjct: 331 QYGLPLKIISYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGHN 390

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR--SFLLQRN 185
            DD  ETV +   R    +    + +  T   D  +   +PF     ++I    +    +
Sbjct: 391 ADDIAETVLLNILRGDIARLSRCTFI--TTGEDGPIPRCKPFKYTYEKEIVIYPYYAISH 448

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212
           I  C    N    + R   R F++D++
Sbjct: 449 IFSCIYSPNA---Y-RGFAREFIKDLE 471


>gi|261346011|ref|ZP_05973655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rustigianii DSM 4541]
 gi|282565896|gb|EFB71431.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rustigianii DSM 4541]
          Length = 373

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 52/195 (26%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS      L           +K               D+  Y        
Sbjct: 14  KVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNW----------EEDDDEEYCSAATDLA 63

Query: 74  --SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    +++                +  R               A +   A
Sbjct: 64  DAQAVCDKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 123

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + + A  I T H     D   ++  +R   +  ++   L  +    +         P   
Sbjct: 124 EDLGADYIATGHYVRRRDVNGKSQLLRGLDNNKDQSYFLYTLSHEQIAKS----LFPVGE 179

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 180 LEKPEVRRIAEEIGL 194


>gi|227499265|ref|ZP_03929377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus tetradius ATCC 35098]
 gi|227218674|gb|EEI83905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus tetradius ATCC 35098]
          Length = 367

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 68/198 (34%), Gaps = 42/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK---FSAISVDHCLRETAKD 68
               ++V +SGG DS    + L     D      +++            VD+       +
Sbjct: 5   KDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDDTDENGVCTAEVDY-------E 57

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISE 112
           +   V   C+++ I +  ++++     +  T  +   ++ R             +    +
Sbjct: 58  DAVAV---CNQIDIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLD 114

Query: 113 HAKTINATLIMTAHTF--DDQL-ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            AK++ A  + T H    D    ETV +R      ++   LS +    + D    +  P 
Sbjct: 115 FAKSLGADFVATGHYARVDRSADETVMLRGVDSNKDQTYFLSQLSQEQIKD----VLFPV 170

Query: 170 LRCRREDIRSFLLQRNIS 187
               +  +R    +  ++
Sbjct: 171 GELEKSQVREIAHKYKLA 188


>gi|91215966|ref|ZP_01252935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychroflexus torquis ATCC 700755]
 gi|91185943|gb|EAS72317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychroflexus torquis ATCC 700755]
          Length = 397

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 58/197 (29%), Gaps = 40/197 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS            +     +K           + +    DE  ++ D 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLCKEKGYEVIGLFMK--------NWHDDSVTISDECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V       +                       RE ++ +  + A
Sbjct: 54  NDAMLVAEKLGIPFQTVDLSKQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIA 113

Query: 115 KTINATLIMTAHT-FDDQL----ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            ++ A  + T H    D +    ET+  R      +       +C      L   +  P 
Sbjct: 114 TSLGADYVATGHYCRKDSIEKNSETI-YRLLAGKDDNKDQSYFLCQVSQKQLAKTLF-PV 171

Query: 170 LRCRREDIRSFLLQRNI 186
              ++ ++R     +N+
Sbjct: 172 GELQKSEVRQIAKSQNL 188


>gi|116671415|ref|YP_832348.1| GMP synthase [Arthrobacter sp. FB24]
 gi|116611524|gb|ABK04248.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter sp. FB24]
          Length = 529

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 27/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +  A ++  +SGG DS     A+ + L  R+ G  + + + VDH  LRE   ++V 
Sbjct: 218 IRKQIGDARVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLREGEAEQVE 271

Query: 72  --YVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKT-------- 116
             +V+    +L +A+    ++      S P+T      RE   A                
Sbjct: 272 RDFVAATGVKLYVANEQERFQAALAGVSDPETKRKIIGREFIRAFEEAELAIIAEAAAHG 331

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E+             +        +  DL   +  P     +++
Sbjct: 332 EKIKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLQFELVEPLRALFKDE 386

Query: 177 IRSFLLQRNIS 187
           +R+   Q  + 
Sbjct: 387 VRAVGAQLGLP 397


>gi|225405609|ref|ZP_03760798.1| hypothetical protein CLOSTASPAR_04830 [Clostridium asparagiforme
           DSM 15981]
 gi|225042873|gb|EEG53119.1| hypothetical protein CLOSTASPAR_04830 [Clostridium asparagiforme
           DSM 15981]
          Length = 513

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  +    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVETTIKALREKIGDGKVLCALSGGVDSSVAAVMLSKAVGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|254173555|ref|ZP_04880227.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp.
           AM4]
 gi|214032247|gb|EEB73077.1| N-type ATP pyrophosphatase superfamily protein [Thermococcus sp.
           AM4]
          Length = 263

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 59/199 (29%), Gaps = 39/199 (19%)

Query: 4   SPIESVRFFVRS-LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE +R F R   +    IL+  SGG DS   L  L          K+  SA++  H  
Sbjct: 6   TVIEDLRNFARKTGLRDRKILMLFSGGKDSSLALYLLKE-------AKLNVSALTFFHRW 58

Query: 63  RETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE------------ARYAL 109
              +  E + +       L + H +V            A  R+                 
Sbjct: 59  ---SWRETLNWAMKFTKNLGVEHYLVDIT---EGLLREAVGRKGPVCIHCKKVMLWNAKW 112

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               A      ++      +D++    +               +    L  + L I RP 
Sbjct: 113 F---AINNGFDVLAKGDNANDKIIGALLDQCSGD---------IRLCELPRIGLPILRPL 160

Query: 170 LRCRREDIRSFLLQRNISW 188
           +R   E++     +  I  
Sbjct: 161 IRYTAEEVEELADEVGIKP 179


>gi|227509407|ref|ZP_03939456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191119|gb|EEI71186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 374

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 69/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS  +   L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++     +  T  +   ++ R             +    ++A  +
Sbjct: 60  AKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALEL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  I T H    T D+      +R+     ++   LS +    L      +  P     
Sbjct: 120 GADYIATGHYAQLTRDEDGHNHLLRASDGNKDQTYFLSQLSANQL----DRVMFPIGNLV 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KPEVREIARKAGLA 189


>gi|227524073|ref|ZP_03954122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088812|gb|EEI24124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 374

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 69/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS  +   L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++     +  T  +   ++ R             +    ++A  +
Sbjct: 60  AKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALEL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  I T H    T D+      +R+     ++   LS +    L      +  P     
Sbjct: 120 GADYIATGHYAQLTRDEDGHNHLLRASDGNKDQTYFLSQLSANQL----DRVMFPIGNLV 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KPEVREIARKAGLA 189


>gi|227512195|ref|ZP_03942244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus buchneri ATCC 11577]
 gi|227084589|gb|EEI19901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus buchneri ATCC 11577]
          Length = 374

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 69/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS  +   L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++     +  T  +   ++ R             +    ++A  +
Sbjct: 60  AKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALEL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  I T H    T D+      +R+     ++   LS +    L      +  P     
Sbjct: 120 GADYIATGHYAQLTRDEDGHNHLLRASDGNKDQTYFLSQLSANQL----DRVMFPIGNLV 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KPEVREIARKAGLA 189


>gi|157370264|ref|YP_001478253.1| tRNA-specific 2-thiouridylase MnmA [Serratia proteamaculans 568]
 gi|166991124|sp|A8GDD5|MNMA_SERP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157322028|gb|ABV41125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia proteamaculans 568]
          Length = 367

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 52/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNW----------EEDDDEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADFIATGHYVRRQDVDSKSRLLRGVDGNKDQSYFLYTLSHEQVAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q  +
Sbjct: 173 ELEKPEVRRIAEQLEL 188


>gi|83816248|ref|YP_446592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinibacter ruber DSM 13855]
 gi|123528021|sp|Q2RZN9|MNMA_SALRD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83757642|gb|ABC45755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salinibacter ruber DSM 13855]
          Length = 383

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 58/234 (24%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDR--------------SFGKIKFSAISVDHC 61
           +     +LVA+SGG DS    + L     D                    +    S+   
Sbjct: 1   MSKKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSI--- 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EA 105
               + ++ R V    +     H VV  +       +        + R            
Sbjct: 58  ---ESMNDARVV---ATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHI 111

Query: 106 RYALISEHAKTINATLIMTAHTF----DDQLETVYM-RSQRDYAEKGMGLSGMCDTILYD 160
           ++  + + A  ++   I T H      DD+ +   + R      ++   L G+    L  
Sbjct: 112 KWDALLQRADDLDCEYIATGHYANVRYDDERDRYLLSRGLDRNKDQSYALWGLPQEHLAR 171

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCED----------PSNTDDRFERVRV 204
                  P     + +IR    +  +    D          P N   RF + RV
Sbjct: 172 S----IFPLGAYEKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRV 221


>gi|227544348|ref|ZP_03974397.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri
           CF48-3A]
 gi|300908415|ref|ZP_07125878.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri SD2112]
 gi|227185690|gb|EEI65761.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri
           CF48-3A]
 gi|300893822|gb|EFK87180.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus reuteri SD2112]
          Length = 538

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  + D      + + I VDH  LR+    E  
Sbjct: 237 IRKEVGNKKVILGLSGGVDSSVTAVLIHKAIGD------QLTCIFVDHGLLRKN---EAD 287

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NA 119
            V D +   L +  +++    +    G +       + R         + +E AK I +A
Sbjct: 288 QVMDALSRDLGV--NIIKVDAADRFLGKLEGVTDPEQKRKIIGKEFIEVFNEEAKKIKDA 345

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +   L   +  P  +  +++ R 
Sbjct: 346 DFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRKLFKDETRE 399

Query: 180 FLLQRNISW 188
              +  I  
Sbjct: 400 LGEKLGIPH 408


>gi|49474501|ref|YP_032543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella quintana str. Toulouse]
 gi|81646912|sp|Q6FZ46|MNMA_BARQU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49240005|emb|CAF26420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella quintana str. Toulouse]
          Length = 408

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 35/144 (24%)

Query: 12  FVRSLVYP-----AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           F+ SL  P     + I+VA+SGG DS  +   L     D     ++      DH     R
Sbjct: 2   FLNSLDLPGQPDNSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLY----DHGAATHR 57

Query: 64  ET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------- 109
                A  ++     V   L I H V+ ++    +  +   A    YA            
Sbjct: 58  VGACCAGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAES--YAHGETPVPCVACN 115

Query: 110 -------ISEHAKTINATLIMTAH 126
                  +   A+ + A  + T H
Sbjct: 116 QTVKFADLLATARELGADALATGH 139


>gi|258651487|ref|YP_003200643.1| GMP synthase large subunit [Nakamurella multipartita DSM 44233]
 gi|258554712|gb|ACV77654.1| GMP synthase, large subunit [Nakamurella multipartita DSM 44233]
          Length = 523

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 27/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++     VR++V    ++ A+SGG DS      +H  + D      + + + VDH  L
Sbjct: 207 SILDEQVAAVRAVVGTEKVICALSGGVDSAVAAALVHQAVGD------QLTCVFVDHGLL 260

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARY----AL 109
           R   +++V    D  +   I    V  +           +P+T      RE       A 
Sbjct: 261 RAGEREQVE--RDYVAATGIHLVTVDAEQRFLAALDGITEPETKRKIIGREFIRVFETAA 318

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
              +A       ++    + D +E+             +        +  DL   +  P 
Sbjct: 319 AEINAAEGGVKFLVQGTLYPDVVES-----GGGTGTATIKSHHNVGGLPDDLQFQLVEPL 373

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R+   +  + 
Sbjct: 374 RALFKDEVRALGAELGLP 391


>gi|225848332|ref|YP_002728495.1| tRNA-specific 2-thiouridylase MnmA [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644575|gb|ACN99625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 351

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 36/195 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           I      VD   + +       +  ++  
Sbjct: 2   KKVVVGLSGGVDSSTAAFILK--QQGYQVIGITLKLSEVD---QCSLDKQVCCSTKDILD 56

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKT 116
              V S L I H V+ W++   +                   +   RE +  L++++AK 
Sbjct: 57  AKKVASFLGIPHYVIDWQDIFKEKVIDYFIREYQSGYTPNPCSICNREVKTGLLAKYAKK 116

Query: 117 -INATLIMTAHT-FDDQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A    T H    D L  E V  R      ++   ++ +   ++      +  P    
Sbjct: 117 VLKADFFATGHYIKTDFLDGEKVIKRGVDTSKDQSYFMALVEKEVI----DMLIFPLGDF 172

Query: 173 RREDIRSFLLQRNIS 187
            +E++R    +  I 
Sbjct: 173 TKEEVRKIAYENKIP 187


>gi|313623686|gb|EFR93838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria innocua FSL J1-023]
          Length = 371

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYEDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIATKAGLA 189


>gi|255281218|ref|ZP_05345773.1| GMP synthase [Bryantella formatexigens DSM 14469]
 gi|255268175|gb|EET61380.1| GMP synthase [Bryantella formatexigens DSM 14469]
          Length = 514

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   + +      + + + VDH  L
Sbjct: 200 SFVEESIKAIREKVGSGRVLCALSGGVDSSVAAVLLSKAVGE------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|194467107|ref|ZP_03073094.1| GMP synthase, large subunit [Lactobacillus reuteri 100-23]
 gi|194454143|gb|EDX43040.1| GMP synthase, large subunit [Lactobacillus reuteri 100-23]
          Length = 517

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  + D      + + I VDH  LR+    E  
Sbjct: 216 IRKEVGDKKVILGLSGGVDSSVTAVLIHKAIGD------QLTCIFVDHGLLRKN---EAN 266

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NA 119
            V D +   L +  +++    +    G +       + R         + +E AK I +A
Sbjct: 267 QVMDALSRDLGV--NIIKVDAADRFLGKLEGVTDPEQKRKIIGKEFIEVFNEEAKKIKDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +   L   +  P  +  +++ R 
Sbjct: 325 DFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRKLFKDETRE 378

Query: 180 FLLQRNISW 188
              +  I  
Sbjct: 379 LGEKLGIPH 387


>gi|302387288|ref|YP_003823110.1| GMP synthase, large subunit [Clostridium saccharolyticum WM1]
 gi|302197916|gb|ADL05487.1| GMP synthase, large subunit [Clostridium saccharolyticum WM1]
          Length = 513

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +R  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVESSIATIREKVGDGKVLCALSGGVDSSVAAVMLAKAVGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|256830660|ref|YP_003159388.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579836|gb|ACU90972.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 347

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 49/194 (25%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDVCSRL 80
            +A+SGG+DS+  L+ L    ++      +F            A DE  +  +  +C++L
Sbjct: 5   AIALSGGADSLMSLLLLRETGAEVMAVHARFL----------GADDEALHERLHGLCAKL 54

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAKTINATLIMT 124
           R+   +V  +    +  +    R  +                + L+ +  + + A  + T
Sbjct: 55  RVPFHLVDLRREFEELVIAPFVRAYQSGLTPNPCATCNPAIKFGLLLDRVRELGADRLAT 114

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGL----------SGMCDTILYDLNLWISRPFLRCRR 174
            H           R  R     G  L          S     +  +    +  P     +
Sbjct: 115 GHYA---------RLAR--TPHGAALYRGLDADKDQSYFLSRVPRERFEQVIFPLADWTK 163

Query: 175 EDIRSFLLQRNISW 188
             +R  L +R ++ 
Sbjct: 164 SAVRQALAERGLTP 177


>gi|254459568|ref|ZP_05072984.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacterales bacterium
           HTCC2083]
 gi|206676157|gb|EDZ40644.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 524

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR+   DEV
Sbjct: 219 AIRAQVGDKKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRKGEADEV 272

Query: 71  RYVSDVCSRLRIAHSVVSWKNS----------KPQTGLMAAAREARYALISEHAKTINAT 120
             VS       + H + + +             P+T      R           +   A 
Sbjct: 273 --VSMFRDNYNM-HFIHAEEQELFLGELDGQDDPETKRKIIGRLFIDVFQKYAGQIDGAE 329

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   + L +  P     ++++R+ 
Sbjct: 330 FLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRAL 386

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 387 GRELGLP 393


>gi|167761107|ref|ZP_02433234.1| hypothetical protein CLOSCI_03505 [Clostridium scindens ATCC 35704]
 gi|167661341|gb|EDS05471.1| hypothetical protein CLOSCI_03505 [Clostridium scindens ATCC 35704]
          Length = 442

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            V+  V    +L+A+SGG DS  +   L   +        +   + V+H L R+   + V
Sbjct: 140 LVKRQVGDRKVLLALSGGVDSSVVAALLLKAIGQ------QLVCVHVNHGLMRKNESESV 193

Query: 71  RYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V               P+        E       E  K      
Sbjct: 194 VEVFQ--NQLHANLIYVDATERFLGKLEGVKDPEEKRKIIGGEFIRVFEEEARKLDGIDF 251

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 252 LGQGTIYPDIIE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLKQLFKDEVRACG 305

Query: 182 LQRNISW 188
           ++  +  
Sbjct: 306 IELGLPP 312


>gi|134094586|ref|YP_001099661.1| GMP synthase [Herminiimonas arsenicoxydans]
 gi|226739633|sp|A4G4U7|GUAA_HERAR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|133738489|emb|CAL61534.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Herminiimonas arsenicoxydans]
          Length = 539

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 32/191 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR    DE +
Sbjct: 217 IRQQVGNDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLR---LDEGK 267

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
            V +     L +  +V+         G +A             RE       E  K  NA
Sbjct: 268 MVMEMFADHLGV--NVIRIDAVDQFMGHLAGVTDPEAKRKIIGREFVEVFQVEAGKRKNA 325

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRCRREDI 177
             +     + D +E+          +KG  +        +   LNL +  P     ++++
Sbjct: 326 KWLAQGTIYPDVIESA------GKGKKGHTIKSHHNVGGLPETLNLQLLEPLRELFKDEV 379

Query: 178 RSFLLQRNISW 188
           R   +   +  
Sbjct: 380 RQLGVALGLPH 390


>gi|56418789|ref|YP_146107.1| GMP synthase [Geobacillus kaustophilus HTA426]
 gi|261418575|ref|YP_003252257.1| GMP synthase [Geobacillus sp. Y412MC61]
 gi|319765390|ref|YP_004130891.1| GMP synthase, large subunit [Geobacillus sp. Y412MC52]
 gi|81348285|sp|Q5L3E1|GUAA_GEOKA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56378631|dbj|BAD74539.1| GMP synthetase (glutamine amidotransferase) [Geobacillus
           kaustophilus HTA426]
 gi|261375032|gb|ACX77775.1| GMP synthase, large subunit [Geobacillus sp. Y412MC61]
 gi|317110256|gb|ADU92748.1| GMP synthase, large subunit [Geobacillus sp. Y412MC52]
          Length = 510

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E VR  +R  V    +L A+SGG DS    + +H  + D      + + I VDH  LR+ 
Sbjct: 204 EQVRR-IREQVGGKKVLCALSGGVDSSVAAVLVHRAIGD------QLTCIFVDHGLLRKG 256

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAK 115
              E   V      + ++    V  K+           P+        E  Y    E AK
Sbjct: 257 ---EAESVMKTFREQFQMNVIKVDAKDRFLAKLKGVTDPEQKRKIIGNEFIYVFDDEAAK 313

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 ++    + D +E            + +        +  D+   +  P     ++
Sbjct: 314 LEGIEFLVQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMKFELIEPLNTLFKD 367

Query: 176 DIRSFLLQRNIS 187
           ++R+   Q  I 
Sbjct: 368 EVRALGTQLGIP 379


>gi|322833617|ref|YP_004213644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rahnella sp. Y9602]
 gi|321168818|gb|ADW74517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rahnella sp. Y9602]
          Length = 369

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW----------EEDDDEEYCTAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|33601310|ref|NP_888870.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bordetella bronchiseptica RB50]
 gi|44887946|sp|Q7WK13|GUAA_BORBR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33575746|emb|CAE32823.1| GMP synthase [glutamine-hydrolyzing] [Bordetella bronchiseptica
           RB50]
          Length = 530

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 24/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 214 EAVAR-IREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLR-- 264

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
             DE + V       + +    V             + P+       RE       E  K
Sbjct: 265 -LDEGKQVMQTFAENMGVKIVHVDATSQFMGKLTGVADPEAKRKIIGREFVEVFQDEAGK 323

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+      +      +        +   LNL +  P     ++
Sbjct: 324 LQGAKWLAQGTIYPDVIES---AGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFKD 380

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 381 EVRELGVALGLPP 393


>gi|152974097|ref|YP_001373614.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|226738386|sp|A7GKG1|GUAA_BACCN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|152022849|gb|ABS20619.1| GMP synthase, large subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 512

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +  K   G+            E  Y    E
Sbjct: 256 RKG---EAEGVMKTFSEGFHMNVIKIDARERFMKKLKGVEDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 AAKLEGIDFLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 367 FKDEVRVLGSELGIP 381


>gi|313885656|ref|ZP_07819405.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619021|gb|EFR30461.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 518

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 33/193 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D   
Sbjct: 218 IQEKVGNRKVLLGLSGGVDSSVVGVLLQKAIGD------QLVCIFVDHGLLRKNEGDS-- 269

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREAR-------YALISEHAKTINAT 120
            V     +  +   ++             G+    R+ +       Y    E +K     
Sbjct: 270 -VMATLEQFGL--HIIRVDAKDRFLGKLAGVADPERKRKIIGNEFVYVFDDEASKLNGID 326

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E          + + +        +  D+   +  P     ++++R+ 
Sbjct: 327 FLAQGTLYTDVIE------SGTDSAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRAL 380

Query: 181 LLQ----RNISWC 189
                   NI W 
Sbjct: 381 GEALGMPHNIVWR 393


>gi|167464004|ref|ZP_02329093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382960|ref|ZP_08056792.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153080|gb|EFX45538.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 364

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 60/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             I++ +SGG DS    + L         V        ++F      HC   TA+++   
Sbjct: 5   KRIILGMSGGVDSSVSALLLKEQGYDVIGVFMKNWDDTVEFG-----HC---TAEEDAED 56

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGL-----MAAA-----------REARYALISEHAKT 116
           V  VC ++ I    V+++    +                       RE ++    +    
Sbjct: 57  VRRVCDQVGIPFYTVNFEKQYMEKVFSYFLNEYKRGRTPNPDVMCNREIKFGEFLQKGLD 116

Query: 117 INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +    I T H     +   E V +R      ++   L  +    L         P     
Sbjct: 117 LGGDYIATGHYARVEERNGEYVLLRGNDPNKDQTYFLHALNQFQLSKAMF----PIGHLP 172

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 173 KPEVRKLAEEAGLA 186


>gi|158425329|ref|YP_001526621.1| GMP synthase [Azorhizobium caulinodans ORS 571]
 gi|158332218|dbj|BAF89703.1| putative GMP synthase [Azorhizobium caulinodans ORS 571]
          Length = 515

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 24/192 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           ES+R  +R+ V    +L  +SGG DS    + +H  + D      + + + VDH L R  
Sbjct: 206 ESIRK-IRAQVGDKRVLCGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRLG 258

Query: 66  AKDEVRYVSDVCSR-LRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
              E   V  +      I    V             S P+       +       +E  K
Sbjct: 259 ---EAEQVVSLFRNTYNIPLVHVDASELFLKELDGVSDPEKKRKTIGKLFIDVFEAEAKK 315

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+V   S        +        +   +N+ +  P     ++
Sbjct: 316 IGGADFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKD 372

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  + 
Sbjct: 373 EVRALGRELGLP 384


>gi|319404602|emb|CBI78208.1| GMP synthase [Bartonella rochalimae ATCC BAA-1498]
          Length = 518

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 24/192 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V  +H++  +SGG DS    I LH  + D      + + + VDH L R+ 
Sbjct: 209 EQAVTAIREKVGKSHVICGLSGGVDSSVAAILLHEAVGD------QLTCVFVDHGLMRKN 262

Query: 66  AKDEVRYVSDVCS-RLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
              EV  V  +      I    V+  +         + P+       R        E  K
Sbjct: 263 ---EVEEVLTLFRGHYNIKLIHVNAADMFINALEGETDPEKKRKIIGRLFIEVFEEETKK 319

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+V            +        +   + + +  P     ++
Sbjct: 320 IRGAEFLAQGTLYPDVIESV----SAIGEAVTIKSHHNVGGLPERMKMQLVEPLRELFKD 375

Query: 176 DIRSFLLQRNIS 187
           D+RS   +  + 
Sbjct: 376 DVRSLGRELGLP 387


>gi|104773839|ref|YP_618819.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|123077302|sp|Q1GAS1|MNMA_LACDA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|103422920|emb|CAI97582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 375

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++       +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTNDDGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++    +           A R          E ++    E+A  ++
Sbjct: 61  KVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  +   H      D+   T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKR----VMFPLQDLTK 176

Query: 175 EDIRSFLLQRNI 186
            ++R    +  +
Sbjct: 177 PEVRRIAEEAGL 188


>gi|116513846|ref|YP_812752.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|122275384|sp|Q04B58|MNMA_LACDB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116093161|gb|ABJ58314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125503|gb|ADY84833.1| Probable tRNA-methyltransferase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 375

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++       +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTNDDGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++    +           A R          E ++    E+A  ++
Sbjct: 61  KVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  +   H      D+   T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKR----VMFPLQDLTK 176

Query: 175 EDIRSFLLQRNI 186
            ++R    +  +
Sbjct: 177 PEVRRIAEEAGL 188


>gi|329942704|ref|ZP_08291483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci Cal10]
 gi|332287299|ref|YP_004422200.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci 6BC]
 gi|313847883|emb|CBY16878.1| tRNA-methyltransferase [Chlamydophila psittaci RD1]
 gi|325507227|gb|ADZ18865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci 6BC]
 gi|328814964|gb|EGF84953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci Cal10]
 gi|328914545|gb|AEB55378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila psittaci 6BC]
          Length = 362

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 37/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-------KDEVRYVS 74
           ++VA+SGG DS  +   L  + S R  G              E           +   V 
Sbjct: 5   VVVAMSGGVDSSVVAYLLKKMTSYRVLGIFMK-------NWEEEDSNGLCSTAKDYEDVE 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
            V  +L I +  VS+     +                       RE ++ L+ +    + 
Sbjct: 58  RVAEQLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELG 117

Query: 119 ATLIMTAH--TFDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              + T H    D + + V  +R +  + ++   L G     L +    +  P     + 
Sbjct: 118 GDFLATGHYCRLDVRRQGVELLRGKDPHKDQSYFLCGTRQESLKN----VLFPLGDMTKT 173

Query: 176 DIRSFLLQRNIS 187
           ++R+   Q  ++
Sbjct: 174 EVRAIAAQAGLA 185


>gi|186476070|ref|YP_001857540.1| GMP synthase [Burkholderia phymatum STM815]
 gi|226738407|sp|B2JIA0|GUAA_BURP8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|184192529|gb|ACC70494.1| GMP synthase, large subunit [Burkholderia phymatum STM815]
          Length = 527

 Score = 54.9 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H+++ +SGG DS      LH  + D      + + + VDH  LR     E  
Sbjct: 216 IRKQVGDEHVILGLSGGVDSSVAAALLHRAIGD------QLTCVFVDHGLLRLN---EAE 266

Query: 72  YVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V       L +   V+    S+           P+        E      +E  K  +A
Sbjct: 267 QVMSMFADNLGVK--VIHVDASEAFMSKLKGVTDPEAKRKIIGAEFVEVFQTEAGKLTDA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+     +   A   +        +   LNL +  P     ++++R 
Sbjct: 325 KWLAQGTIYPDVIES---AGKGKKAAHTIKSHHNVGGLPETLNLKLLEPLRELFKDEVRE 381

Query: 180 FLLQRNISW 188
             ++  +  
Sbjct: 382 LGVKLGLPP 390


>gi|319407593|emb|CBI81243.1| GMP synthase [Bartonella sp. 1-1C]
          Length = 518

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 24/192 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V  +H++  +SGG DS    I LH  + D      + + + VDH L R+ 
Sbjct: 209 EQAVAAIREKVGKSHVICGLSGGVDSSVAAILLHEAVGD------QLTCVFVDHGLMRKN 262

Query: 66  AKDEVRYVSDVCS-RLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
              E   V  +      I    V+  +         + P+       R        E  K
Sbjct: 263 ---EAEEVLTLFRGHYNIKLIHVNAADMFINALEGETDPEKKRKIIGRLFIEVFEEETKK 319

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+V            +        +   + + +  P     ++
Sbjct: 320 IGGAEFLAQGTLYPDVIESV----SAIGEAVTIKSHHNVGGLPEQMKMQLVEPLRELFKD 375

Query: 176 DIRSFLLQRNIS 187
           D+RS   +  + 
Sbjct: 376 DVRSLGRELGLP 387


>gi|307265214|ref|ZP_07546773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919836|gb|EFN50051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 387

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 81/243 (33%), Gaps = 52/243 (21%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH----------- 60
           F+ ++     + + +SGG DS      L     D     +K     VDH           
Sbjct: 20  FIYNMEINNRVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVW---VDHAAKAFDSDKSC 76

Query: 61  -CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-R 103
             LR  A  + + V+++   L + H  V +                             R
Sbjct: 77  CSLR--ATQDAKKVAEM---LGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNR 131

Query: 104 EARYALISEHAKTINATLIMTAHT-FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           + ++  + E A  + A  I T H    D  E    +++R   +KG+  S     +LY L 
Sbjct: 132 QIKFGELLEKAFELGAYYIATGHYVRKDYDE----KTKRYLLKKGIDSSKDQSYVLYRLT 187

Query: 163 LWISR----PFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFERVRVRRFVRDID 212
                    P    ++E+IR+      +   + P +       D+ +    ++R V+D  
Sbjct: 188 QKQLEHALFPLGNYKKEEIRALAEGLKLPVAKKPESQEICFIPDNDYS-GFIKRQVKDEI 246

Query: 213 LHA 215
              
Sbjct: 247 KPG 249


>gi|94499665|ref|ZP_01306202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanobacter sp. RED65]
 gi|94428419|gb|EAT13392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanobacter sp. RED65]
          Length = 369

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 61/194 (31%), Gaps = 40/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        AK+++   
Sbjct: 10  KVIVGMSGGVDSSVSAYLLMEQGYHVEGLFMK--------NWEEDDGTEYCTAKEDLADA 61

Query: 74  SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTI 117
             VC +L I     +     W N          A           RE ++    ++AK +
Sbjct: 62  QAVCDKLGIKLHSANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAKIL 121

Query: 118 NATLIMTAHTFDDQLE----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  I T H    + E    T  ++   +  ++   L  + +  +         P     
Sbjct: 122 GADYIATGHYVR-RYEKDGSTYLLKGLDNNKDQSYFLHAVGEDEIKQT----LFPVGELE 176

Query: 174 REDIRSFLLQRNIS 187
           + ++R    ++ ++
Sbjct: 177 KPEVRRIAEEQGLA 190


>gi|34498920|ref|NP_903135.1| GMP synthase [Chromobacterium violaceum ATCC 12472]
 gi|44887934|sp|Q7NSG1|GUAA_CHRVO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|34104769|gb|AAQ61126.1| GMP synthetase [Chromobacterium violaceum ATCC 12472]
          Length = 525

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 64/193 (33%), Gaps = 24/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V+  +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 209 EAVKK-IREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN 261

Query: 66  AKDEVRYVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTIN- 118
              E + V +     L +    V  +         +T      +      I    +    
Sbjct: 262 ---EGKMVMEMFAQNLGVKVVHVQAEADFMAKLAGETDPEKKRKIIGAEFIEVFDRESGK 318

Query: 119 ---ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+      +      +        +  D+NL +  P     ++
Sbjct: 319 LTNAKWLAQGTIYPDVIES---AGAKTKKAHTIKSHHNVGGLPEDMNLKLLEPLRELFKD 375

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 376 EVRQLGVALGLPH 388


>gi|71027267|ref|XP_763277.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350230|gb|EAN30994.1| hypothetical protein TP03_0259 [Theileria parva]
          Length = 368

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 57/231 (24%), Gaps = 91/231 (39%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIAL---------------------------- 39
             R    S   P+  L++ SGG DSM LL +                             
Sbjct: 138 KAREHFGSGPLPS--LLSCSGGVDSMSLLHSFGIIKIMYEELINDIITVFNSKMNSVPFK 195

Query: 40  --------------HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
                           ++         F  +  +H  RE    +++ +   C + +    
Sbjct: 196 IISETSKVDYKTKKAELMKFLKEFYDNFKVVYFNHKQREDIDKDIQVIRAACEKYKFDLI 255

Query: 86  VVSW------KNSKPQTGLMAAAREARYA------------------------------- 108
           +         K    + G     R+ R                                 
Sbjct: 256 IEELPQELQSKTEVSKFGPQLMFRKWRRETCMKIIDSLSSSDSTGGNKGDLKNTERVMNF 315

Query: 109 ----LISEHAKTINATLI------MTAHTFDDQLETVYMRSQRDYAEKGMG 149
               LI  H       LI        AH  +D  ET+ ++  RD +   +G
Sbjct: 316 PDENLIDLHTIKTPEDLIGLKGLVFMAHHLNDNFETLLLKISRDTSIFNLG 366


>gi|270261459|ref|ZP_06189732.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13]
 gi|270044943|gb|EFA18034.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13]
          Length = 367

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 35/133 (26%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNW----------EEDDDEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADFIATGH 129


>gi|222086955|ref|YP_002545489.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Agrobacterium radiobacter K84]
 gi|254811443|sp|B9J9F7|MNMA_AGRRK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221724403|gb|ACM27559.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Agrobacterium radiobacter K84]
          Length = 399

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 48/205 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PEDTRVVVAMSGGVDSSVVAGILKRQGYDVLGITLQLY----DHGAAVHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  + I H V+ ++    +T +   A                   ++A +   A
Sbjct: 66  DDARRVCETIGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----------- 163
           K + A  + T H         Y+RS+ + +    G   +      D +            
Sbjct: 126 KELGADALATGH---------YIRSRPNPSADHPGRRALYRPADADRDQSYFLFATTQEQ 176

Query: 164 --WISRPFLRCRREDIRSFLLQRNI 186
             ++  P     + + R+   +  +
Sbjct: 177 IDYLRFPLGGMPKAETRALAEEMGL 201


>gi|283770696|ref|ZP_06343588.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283460843|gb|EFC07933.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus H19]
          Length = 372

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
            +VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYTRIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 173 IEKSEVRRIAEEQGL 187


>gi|258424047|ref|ZP_05686929.1| tRNA methyl transferase [Staphylococcus aureus A9635]
 gi|257845668|gb|EEV69700.1| tRNA methyl transferase [Staphylococcus aureus A9635]
          Length = 372

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
            +VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 173 IEKSEVRRIAEEQGL 187


>gi|240850925|ref|YP_002972325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella grahamii as4aup]
 gi|240268048|gb|ACS51636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella grahamii as4aup]
          Length = 409

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 31/148 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFL+ ++     +      + I+VA+SGG DS  +   L     +     ++      DH
Sbjct: 1   MFLNSLD-----LPGQPEDSRIVVAMSGGVDSSVVAGLLKKEGYNVIGITLQLY----DH 51

Query: 61  C---LRET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------- 107
                R     A  ++     V   L I H V+ ++    +  +   A    +       
Sbjct: 52  GAATHRVGACCAGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPC 111

Query: 108 ---------ALISEHAKTINATLIMTAH 126
                    A +   A+ + A  + T H
Sbjct: 112 IACNQTVKFADLLATARELGADALATGH 139


>gi|221141109|ref|ZP_03565602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
          Length = 364

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
            +VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 173 IEKSEVRRIAEEQGL 187


>gi|82751221|ref|YP_416962.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus RF122]
 gi|123547857|sp|Q2YT57|MNMA_STAAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|82656752|emb|CAI81181.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase tRNA
           [Staphylococcus aureus RF122]
          Length = 372

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
            +VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 173 IEKSEVRRIAEEQGL 187


>gi|15924611|ref|NP_372145.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156979939|ref|YP_001442198.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|255006407|ref|ZP_05145008.2| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|24638325|sp|Q931Q6|MNMA_STAAM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235085|sp|A7X333|MNMA_STAA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|14247392|dbj|BAB57783.1| tRNA-methyltransferase [Staphylococcus aureus subsp. aureus Mu50]
 gi|156722074|dbj|BAF78491.1| 5-methylaminomethyl-2-thiouridylate- methyltransf erase
           [Staphylococcus aureus subsp. aureus Mu3]
          Length = 372

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
            +VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 173 IEKSEVRRIAEEQGL 187


>gi|304321565|ref|YP_003855208.1| GMP synthase [Parvularcula bermudensis HTCC2503]
 gi|303300467|gb|ADM10066.1| GMP synthase [Parvularcula bermudensis HTCC2503]
          Length = 524

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 22/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S  E +   ++  V    ++  +SGG DS    + +H  + D      + + + VD  L 
Sbjct: 212 SFREEMTAKIKDQVGDGRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDTGLM 265

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKN--SKPQTGLMAAAREAR------YALISEH 113
           R+    E R V D+      I    V  ++       G+    R+ +        +    
Sbjct: 266 RQG---EARAVVDLFREHYHIPLVHVEAEDLFLSKLEGVEDPERKRKIIGGTFIDVFEAE 322

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK I    +     + D +E+V            +        +   +NL +  P     
Sbjct: 323 AKKIKGDFLAQGTLYPDVIESVSFD---GGPSVTIKSHHNVGGLPERMNLKLVEPLRELF 379

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 380 KDEVRHLGQELGLP 393


>gi|15927201|ref|NP_374734.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus N315]
 gi|49483866|ref|YP_041090.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|57650503|ref|YP_186516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus COL]
 gi|148268102|ref|YP_001247045.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394170|ref|YP_001316845.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221735|ref|YP_001332557.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509848|ref|YP_001575507.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253316605|ref|ZP_04839818.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253732278|ref|ZP_04866443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253733127|ref|ZP_04867292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257425746|ref|ZP_05602170.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428406|ref|ZP_05604804.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431044|ref|ZP_05607423.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433730|ref|ZP_05610088.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436645|ref|ZP_05612689.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876]
 gi|257793696|ref|ZP_05642675.1| tRNA methyl transferase [Staphylococcus aureus A9781]
 gi|258411005|ref|ZP_05681285.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763]
 gi|258420193|ref|ZP_05683148.1| tRNA methyl transferase [Staphylococcus aureus A9719]
 gi|258438195|ref|ZP_05689479.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299]
 gi|258443658|ref|ZP_05691997.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115]
 gi|258446865|ref|ZP_05695019.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300]
 gi|258448779|ref|ZP_05696891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus A6224]
 gi|258450551|ref|ZP_05698613.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948]
 gi|258453598|ref|ZP_05701576.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937]
 gi|262048616|ref|ZP_06021499.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Staphylococcus aureus D30]
 gi|269203247|ref|YP_003282516.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893124|ref|ZP_06301358.1| tRNA methyl transferase [Staphylococcus aureus A8117]
 gi|282904202|ref|ZP_06312090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906028|ref|ZP_06313883.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908941|ref|ZP_06316759.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282911258|ref|ZP_06319060.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914426|ref|ZP_06322212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282916890|ref|ZP_06324648.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139]
 gi|282919396|ref|ZP_06327131.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427]
 gi|282920169|ref|ZP_06327894.1| tRNA methyl transferase [Staphylococcus aureus A9765]
 gi|282924721|ref|ZP_06332389.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101]
 gi|282928255|ref|ZP_06335860.1| tRNA methyl transferase [Staphylococcus aureus A10102]
 gi|283958382|ref|ZP_06375833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284024678|ref|ZP_06379076.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus 132]
 gi|293503501|ref|ZP_06667348.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510518|ref|ZP_06669224.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809]
 gi|293531058|ref|ZP_06671740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|294848651|ref|ZP_06789397.1| tRNA methyl transferase [Staphylococcus aureus A9754]
 gi|295406743|ref|ZP_06816548.1| tRNA methyl transferase [Staphylococcus aureus A8819]
 gi|295428198|ref|ZP_06820830.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275907|ref|ZP_06858414.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245675|ref|ZP_06929540.1| tRNA methyl transferase [Staphylococcus aureus A8796]
 gi|297590835|ref|ZP_06949473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|304380782|ref|ZP_07363449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|24638330|sp|Q99TM8|MNMA_STAAN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56749735|sp|Q6GG82|MNMA_STAAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71153356|sp|Q5HFE1|MNMA_STAAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|172048920|sp|A6QHG3|MNMA_STAAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040510|sp|A6U290|MNMA_STAA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040511|sp|A5ITE6|MNMA_STAA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189040512|sp|A8Z4F9|MNMA_STAAT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829108|sp|Q2FGA5|MNMA_STAA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829109|sp|Q2FXV6|MNMA_STAA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|13701419|dbj|BAB42713.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus aureus subsp. aureus N315]
 gi|49241995|emb|CAG40692.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57284689|gb|AAW36783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus COL]
 gi|147741171|gb|ABQ49469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946622|gb|ABR52558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|150374535|dbj|BAF67795.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368657|gb|ABX29628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|253724067|gb|EES92796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253728883|gb|EES97612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271440|gb|EEV03586.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275247|gb|EEV06734.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278247|gb|EEV08889.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281823|gb|EEV11960.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257283996|gb|EEV14119.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876]
 gi|257787668|gb|EEV26008.1| tRNA methyl transferase [Staphylococcus aureus A9781]
 gi|257840155|gb|EEV64619.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763]
 gi|257843904|gb|EEV68298.1| tRNA methyl transferase [Staphylococcus aureus A9719]
 gi|257848239|gb|EEV72230.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299]
 gi|257851064|gb|EEV75007.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115]
 gi|257854440|gb|EEV77389.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300]
 gi|257858057|gb|EEV80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus A6224]
 gi|257861709|gb|EEV84508.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948]
 gi|257864329|gb|EEV87079.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937]
 gi|259163263|gb|EEW47822.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Staphylococcus aureus D30]
 gi|262075537|gb|ACY11510.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941107|emb|CBI49493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282313556|gb|EFB43951.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101]
 gi|282317206|gb|EFB47580.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427]
 gi|282319377|gb|EFB49729.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139]
 gi|282321607|gb|EFB51932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324953|gb|EFB55263.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327205|gb|EFB57500.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331320|gb|EFB60834.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590062|gb|EFB95144.1| tRNA methyl transferase [Staphylococcus aureus A10102]
 gi|282594517|gb|EFB99502.1| tRNA methyl transferase [Staphylococcus aureus A9765]
 gi|282595820|gb|EFC00784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282764442|gb|EFC04568.1| tRNA methyl transferase [Staphylococcus aureus A8117]
 gi|283470898|emb|CAQ50109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283790531|gb|EFC29348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285817303|gb|ADC37790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus 04-02981]
 gi|290920326|gb|EFD97392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291095167|gb|EFE25432.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466882|gb|EFF09402.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809]
 gi|294824677|gb|EFG41100.1| tRNA methyl transferase [Staphylococcus aureus A9754]
 gi|294968490|gb|EFG44514.1| tRNA methyl transferase [Staphylococcus aureus A8819]
 gi|295128556|gb|EFG58190.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297177326|gb|EFH36578.1| tRNA methyl transferase [Staphylococcus aureus A8796]
 gi|297575721|gb|EFH94437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|302333295|gb|ADL23488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751450|gb|ADL65627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340658|gb|EFM06591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312437911|gb|ADQ76982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|312830008|emb|CBX34850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129903|gb|EFT85893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195521|gb|EFU25908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198681|gb|EFU29009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140492|gb|EFW32346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144031|gb|EFW35800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323439031|gb|EGA96763.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O11]
 gi|329314296|gb|AEB88709.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727166|gb|EGG63622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329728421|gb|EGG64858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 372

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
            +VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 173 IEKSEVRRIAEEQGL 187


>gi|268316383|ref|YP_003290102.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Rhodothermus marinus DSM 4252]
 gi|262333917|gb|ACY47714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Rhodothermus marinus DSM 4252]
          Length = 382

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 76/245 (31%), Gaps = 68/245 (27%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DH---CLRET---- 65
           +     +LVA+SGG DS      LH           +   I++   D+    +R      
Sbjct: 1   MSRHGRVLVAMSGGVDSSVTAALLHE-------QGYEVVGITMKTWDYTSSGVRTGKEVG 53

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY 107
             + + +     V  RL   H +V  +       +        A R            ++
Sbjct: 54  CCSLESMNDARAVAVRLGFPHFIVDIREEFGDWVIERFTEEYLAGRTPNPCILCNTHIKW 113

Query: 108 ALISEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-N 162
           A +   A  +    I T H      D+          R    +G  L+     +L+ +  
Sbjct: 114 AALLRRADRLGCDYIATGHYARIRYDES-------LGRYVISRGRDLNKDQSYVLWGIAQ 166

Query: 163 LWISR---PFLRCRREDIRSFLLQRN------------ISWCEDPSNTDDRFERVRVRRF 207
             ++R   P     + +IR    +              I +  D     + + R  +R+ 
Sbjct: 167 EHLARTLLPLGDYTKPEIRRMAAEMGFERLAQKPDSYEICFIPD-----NDYRR-FLRQR 220

Query: 208 VRDID 212
           V D+D
Sbjct: 221 VPDLD 225


>gi|83312118|ref|YP_422382.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Magnetospirillum magneticum AMB-1]
 gi|123541366|sp|Q2W2V2|MNMA_MAGMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|82946959|dbj|BAE51823.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Magnetospirillum magneticum AMB-1]
          Length = 373

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 61/207 (29%), Gaps = 57/207 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHS----------VLSDRSFGKIKFSAISVDHCLRET---AK 67
            ++VA+SGG DS  +   L             L D +   I+  A       R     A 
Sbjct: 14  RVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGAC------RPNTCCAG 67

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALIS 111
            ++     V   L I H V+ ++ +  +  +   A                R  ++  + 
Sbjct: 68  KDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEARTPVPCIECNRTVKFRDLL 127

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDL 161
             AK +    + T H             +R     G  L    D              D 
Sbjct: 128 GVAKDLGGDALATGH-----------YVRRRPGVDGPELWTGRDPGRDQSYFLFATTRDQ 176

Query: 162 NLWISRPFLRC-RREDIRSFLLQRNIS 187
             ++  P      +E+ R+   + ++ 
Sbjct: 177 LDFLRFPLGDMAGKEETRAIAARHHLP 203


>gi|225569024|ref|ZP_03778049.1| hypothetical protein CLOHYLEM_05103 [Clostridium hylemonae DSM
           15053]
 gi|225161823|gb|EEG74442.1| hypothetical protein CLOHYLEM_05103 [Clostridium hylemonae DSM
           15053]
          Length = 430

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +R  V    +L+A+SGG DS  +   L   +        + + + V+H 
Sbjct: 118 MKNFIEDQVELIRRQVGDRKVLLALSGGVDSSVVAAMLLKAIGQ------QLTCVHVNHG 171

Query: 62  L 62
           L
Sbjct: 172 L 172


>gi|221233878|ref|YP_002516314.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter crescentus NA1000]
 gi|220963050|gb|ACL94406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter crescentus NA1000]
          Length = 410

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 27/148 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +    +E VR  V  L   A I+ A+SGG DS      L     D     ++      DH
Sbjct: 20  LIARAVEQVRAAV-GLPEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLY----DH 74

Query: 61  CL---RET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------- 104
                R+    A  ++        R+ I H V+ +++   +  +   A            
Sbjct: 75  GAAISRKGACCAGQDILDARMAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPC 134

Query: 105 ------ARYALISEHAKTINATLIMTAH 126
                  ++  + + A+ + A  + T H
Sbjct: 135 VRCNQTVKFRDLLDVARDLGAEAMATGH 162


>gi|116872941|ref|YP_849722.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123461086|sp|A0AIW1|MNMA_LISW6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116741819|emb|CAK20943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 371

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 65/195 (33%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT----GLMAA--AR----------EARYALISEHAKTI 117
             V +++ I +  V+++           L      R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLEEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKIGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIATKAGLA 189


>gi|294508524|ref|YP_003572583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1
           [Salinibacter ruber M8]
 gi|294344853|emb|CBH25631.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           1 [Salinibacter ruber M8]
          Length = 383

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 67/234 (28%), Gaps = 58/234 (24%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDR--------------SFGKIKFSAISVDHC 61
           +     +LVA+SGG DS    + L     D                    +    S+   
Sbjct: 1   MSKKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSI--- 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EA 105
               + ++ R V    +     H VV  +       +        + R            
Sbjct: 58  ---ESMNDARVV---ATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHI 111

Query: 106 RYALISEHAKTINATLIMTAHTF----DDQLETVYM-RSQRDYAEKGMGLSGMCDTILYD 160
           ++  + + A  ++   I T H      DD+ +   + R      ++   L G+    L  
Sbjct: 112 KWDALLQRADDLDCEYIATGHYANVRYDDERDRYLLSRGLDRNKDQSYALWGLPQEHLAR 171

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCED----------PSNTDDRFERVRV 204
                  P     + +IR    +  +    D          P N   RF + RV
Sbjct: 172 S----IFPLGAYEKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRV 221


>gi|323340632|ref|ZP_08080884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091755|gb|EFZ34375.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
          Length = 375

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 65/212 (30%), Gaps = 41/212 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         V       K      +V         ++ + V
Sbjct: 8   RVVVGMSGGVDSSVCAYLLKRQGYDVVGVFMKNWDEKKDSGVCTV--------TEDYQDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V + + I +  V+++        T  +   R  R             +    ++A  +
Sbjct: 60  AKVANEIGIPYYSVNFEKEYWDGVFTYFLDEYRHGRTPNPDVMCNKEVKFKAFLDYAMEL 119

Query: 118 NATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +A  I   H      DD      MR      ++   LS +    L         P    +
Sbjct: 120 DADYIAMGHYAQIKRDDDGTVHLMRGADQNKDQTYFLSQLSGKQLEKAMF----PIGGMQ 175

Query: 174 REDIRSFLLQRNISWCE--DPSNTDDRFERVR 203
           + ++R    +  ++  +  D +      ER  
Sbjct: 176 KSEVREIAKKAGLATADKKDSTGVCFIGERNF 207


>gi|254473501|ref|ZP_05086898.1| GMP synthase - glutamine amidotransferase protein [Pseudovibrio sp.
           JE062]
 gi|211957617|gb|EEA92820.1| GMP synthase - glutamine amidotransferase protein [Pseudovibrio sp.
           JE062]
          Length = 515

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 23/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    ++  +SGG DS    + +H  + D      + + I VDH L R     E 
Sbjct: 210 AIRDQVGDKKVICGLSGGVDSSVAAVLIHEAIGD------QLTCIYVDHGLMRMG---ET 260

Query: 71  RYVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKTI-NAT 120
             V  +      I    V   +         +  E +          +  E AK +  A 
Sbjct: 261 EQVLSMFRDHYNIPLVHVDASDLFIGQLEGESDPEVKRKTIGKLFIEVFEEEAKKLGGAD 320

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   +N+ +  P     ++++R  
Sbjct: 321 FLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRDL 377

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 378 GRELGLP 384


>gi|87122222|ref|ZP_01078105.1| tRNA methyltransferase [Marinomonas sp. MED121]
 gi|86162542|gb|EAQ63824.1| tRNA methyltransferase [Marinomonas sp. MED121]
          Length = 377

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 46/200 (23%)

Query: 17  VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
           +    ++V +SGG DS    LL+       +  F K             E        AK
Sbjct: 15  IKNTKVIVGMSGGVDSSVSALLLIQQGYQVEGLFMK----------NWDEDDGTEYCTAK 64

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALIS 111
           D++     VC +L I     ++                 A R          E ++    
Sbjct: 65  DDLADAQSVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFL 124

Query: 112 EHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           E+A  + A  I T H       D+Q +   ++   +  ++   L  +    +        
Sbjct: 125 EYANALGADYIATGHYVRRTHDDNQAK--LLKGLDNNKDQSYFLYAVGKDEIAKS----L 178

Query: 167 RPFLRCRREDIRSFLLQRNI 186
            P     + ++R    + ++
Sbjct: 179 FPVGELEKPEVRRLAQEHDL 198


>gi|329957309|ref|ZP_08297829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
 gi|328523022|gb|EGF50125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
          Length = 388

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 51/187 (27%), Gaps = 39/187 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE      +   
Sbjct: 39  KRVLVGMSGGIDSTATCLMLQE--QGYEIIGLTMWVW----------GDEPLEARQLARS 86

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   + +         +   R+ R             + + +E A  +N   I 
Sbjct: 87  MGIEHHVADEREAFRNVIVRNFIDEYRQGRTPNPCVMCNPLFKFRIFTEWADKLNCRYIA 146

Query: 124 TAHTFDDQLETVYMRSQ-RDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRREDIR 178
           T H       T       + Y   G          L+ L   + R    P     +  +R
Sbjct: 147 TGHY------TRLEELNGKIYIVAGDDEKKDQSYFLWKLGQDVLRRCLFPLGAYTKLQVR 200

Query: 179 SFLLQRN 185
            +L  + 
Sbjct: 201 DYLRDKG 207


>gi|212225045|ref|YP_002308281.1| GMP synthase subunit B [Thermococcus onnurineus NA1]
 gi|212010002|gb|ACJ17384.1| GMP synthase [Thermococcus onnurineus NA1]
          Length = 307

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 107/316 (33%), Gaps = 50/316 (15%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M+ S I+     +R  V     ++A+SGG DS    +  H  + D      K  A+ V+ 
Sbjct: 1   MWESFIDEKVKEIRETVGDGKAIIALSGGVDSSTAAVLAHRAIGD------KLHAVFVNT 54

Query: 61  C-LRETAKDEVRYV-SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYAL---I 110
             LR+    E  +V       L +    V      ++  K  T      +          
Sbjct: 55  GFLRKG---EPEFVLKTFRDELGMNLHYVDAQGRFFEALKGVTDPEEKRKVIGRVFIEVF 111

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E A+ I+A  ++      D +E       +   +    + G+ + +    NL +  P  
Sbjct: 112 EEVAREIDAEFLIQGTIAPDWIE------SKGKIKSHHNVGGLPERL----NLKLIEPLR 161

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMK 221
              ++++R    +  +         +  + R         VRV   + ++    + +  +
Sbjct: 162 DLYKDEVRELAKELGLP--------EKIYNRMPFPGPGLAVRV---LGEVTPEKVAIVRE 210

Query: 222 KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281
               +  ++  A       +  +     + +  DI     T+   ++     +    +++
Sbjct: 211 ANAIVEEEIAKAGLRPWQAFAVLLGVKTVGVQGDIRAYKETIAIRVVESLDGMTANAMNV 270

Query: 282 PGYRSMERVMLFLKSG 297
           P +  ++R+   + S 
Sbjct: 271 P-FEVLQRIAFRITSE 285


>gi|104781327|ref|YP_607825.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas entomophila L48]
 gi|122403646|sp|Q1IBE4|MNMA_PSEE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|95110314|emb|CAK15021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas entomophila L48]
          Length = 374

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
                ++V +SGG DS    LL+       +  F K             E        A+
Sbjct: 9   PAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMK----------NWEEDDGTEYCTAR 58

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
           +++     VC R+ I     +     W N          A           RE ++    
Sbjct: 59  EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFL 118

Query: 112 EHAKTINATLIMTAH--TFDDQLE-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           ++A ++ A LI T H     D  E T  ++      ++   L  +    +         P
Sbjct: 119 DYALSLGADLIATGHYVRRRDTGELTELLKGLDPNKDQSYFLHAVGGKEIART----LFP 174

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 175 VGELEKPEVRAIAEKHGLA 193


>gi|317488593|ref|ZP_07947138.1| GMP synthase domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325831967|ref|ZP_08165064.1| GMP synthase (glutamine-hydrolyzing) [Eggerthella sp. HGA1]
 gi|316912335|gb|EFV33899.1| GMP synthase domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|325486288|gb|EGC88740.1| GMP synthase (glutamine-hydrolyzing) [Eggerthella sp. HGA1]
          Length = 535

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 61/200 (30%), Gaps = 28/200 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S I+     +R  V    +++ +SGG DS  +       +        + + + ++H L 
Sbjct: 206 SIIDDAVAAIRQQVGSDRVILGLSGGVDSSVVAALCAKAIGK------QLTCVFINHGLL 259

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHA 114
           R+   +EV  V     +  +    V  ++                R             A
Sbjct: 260 RKNEPEEVEDV--FTKQFDVDFVHVHAEDRYAALLADVVEPEQKRRIIGSQFWKEFFAVA 317

Query: 115 KTINAT-----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISR 167
           + +         +     + D +E+      R    K   +    + I +   +   +  
Sbjct: 318 EELAENGRPVKYLAQGTIYPDIIES----GARKTGGKASTIKSHHNLIPFPDGVHFDLIE 373

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R+      + 
Sbjct: 374 PLDHFFKDEVRALGTTLGLP 393


>gi|289625417|ref|ZP_06458371.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649300|ref|ZP_06480643.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866846|gb|EGH01555.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 366

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 42/196 (21%)

Query: 20  AHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
             ++V +SGG DS    LL+       +  F K             E        A++++
Sbjct: 2   KRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMK----------NWEEDDGTEYCTAREDL 51

Query: 71  RYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHA 114
                VC ++ I     +     W N          A           RE ++    ++A
Sbjct: 52  ADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYA 111

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             + A LI T H     D    T  ++      ++   L  +    +         P   
Sbjct: 112 LMLGADLIATGHYVRRRDTDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGE 167

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 168 LEKPEVRAIAEKHGLA 183


>gi|222623719|gb|EEE57851.1| hypothetical protein OsJ_08481 [Oryza sativa Japonica Group]
          Length = 671

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 52/231 (22%), Gaps = 69/231 (29%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L  P   + +  SGG                                +     D +  V
Sbjct: 60  NLFKPGDRVAIGASGGK------------------------------GITGYRDDSLETV 89

Query: 74  SDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                +  +   +VS+K+           +             R   +   A  +    I
Sbjct: 90  KRNEIQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKI 149

Query: 123 MTAHTFDDQLETVYMRSQRD------------YAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +T H  DD  ETV +   R               E G         I             
Sbjct: 150 VTGHNADDIAETVLLNILRGDIARLSRCTFITTGEDGPIPRCKPFKIHLREGDCYISLLC 209

Query: 171 RCRREDIRSFLLQRNISW---------CEDPSNTDDRFERVRVRRFVRDID 212
                 I        + +              N    + R   R F++D++
Sbjct: 210 NIPYNVIL--CSIHQLHFYVIILDLMTRIYSPNA---Y-RGFAREFIKDLE 254


>gi|89895170|ref|YP_518657.1| hypothetical protein DSY2424 [Desulfitobacterium hafniense Y51]
 gi|122482441|sp|Q24US9|MNMA_DESHY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89334618|dbj|BAE84213.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 370

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 59/202 (29%), Gaps = 44/202 (21%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETA 66
           L     ++V +SGG DS      L           + +  S G               TA
Sbjct: 3   LTEKKKVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPSGGPDDVGGCC-----SITA 57

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALI 110
            D+ R V     +L I H V++++                S           R  R+   
Sbjct: 58  IDDARRV---AHQLGIPHYVLNFRTIFDENVIDYFTNAYLSGETPNPCTMCNRVVRWGEF 114

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYM--RSQRDYAEKGMGLS----GMCDTILYDLNLW 164
              A+ + A  + T H        V    +S R +  +          M   +  D    
Sbjct: 115 LRKARALGADYLATGHYA-----KVLQDPQSGRCFLSRPTDTWKDQTYMLYNLTQDQLKH 169

Query: 165 ISRPFLRCRREDIRSFLLQRNI 186
              P    ++E IR    +R +
Sbjct: 170 TLFPLADYKKEHIREMAAERGL 191


>gi|262306059|gb|ACY45622.1| gln amidotransferase [Metajapyx subterraneus]
          Length = 197

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R  V  + +L+ VSGG DS      LH  L +      +F A+ +D+   R+    E 
Sbjct: 36  YIRESVGDSKVLLLVSGGVDSTVCAALLHKALRED-----QFIAVHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V    S+L +   VV+
Sbjct: 88  QKVQQSLSKLGLRLRVVN 105


>gi|139438964|ref|ZP_01772424.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC
           25986]
 gi|133775675|gb|EBA39495.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC
           25986]
          Length = 366

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 56/197 (28%), Gaps = 40/197 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-----------ISVDHCLRETA 66
           +   +LVA+SGG DS      L S   +     ++ +            +          
Sbjct: 2   HNKRVLVAMSGGVDSSVTAYLLKSQGYECVGATMRLTCPAPDPTTGMSKV---------- 51

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  RL I H V+  + +  +  +                    R  ++  +
Sbjct: 52  DRDIADAKAVAERLGIPHHVLDLQQTFDRNVIERFVNAYQEGLTPNPCIICNRHIKFGAL 111

Query: 111 SEHAKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            + A  +    I T H     Q      +  R    K      +       L   I  P 
Sbjct: 112 LDAALDMGCDYIATGHYAKTSQAADGTWQLHRGEDPKKDQSYFLYSLTQERLAHTIF-PL 170

Query: 170 LRCRRE-DIRSFLLQRN 185
               +E D+R    ++ 
Sbjct: 171 AGLDKERDVRRIAAEQG 187


>gi|307711099|ref|ZP_07647521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK321]
 gi|307617061|gb|EFN96239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK321]
          Length = 373

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  RE R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYREGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRKLAEEAGLA 189


>gi|269120194|ref|YP_003308371.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
 gi|268614072|gb|ACZ08440.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sebaldella termitidis ATCC 33386]
          Length = 359

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 67/191 (35%), Gaps = 30/191 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRY 72
              +++ +SGG DS    I L     +      +++ +   + +         A ++ + 
Sbjct: 2   KKRVVLGMSGGVDSSVAAILLKEQGYEVIGVFMKNWDETDENGVC-------PADEDYKD 54

Query: 73  VSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKT 116
           V  V  +L + +  V++      +  T  +   R  R             +    ++A  
Sbjct: 55  VIAVAEQLDVPYYSVNFVKEYWDRVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLDYAVK 114

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I A  I T H    + ++  +R  R   +       +C  +  +    +  P     ++D
Sbjct: 115 IGADYIATGHYARIERDSGKVRLLRGLDDNKDQTYFLCQ-LSQEQLDKVIFPIGEYNKKD 173

Query: 177 IRSFLLQRNIS 187
           IR+   + N+ 
Sbjct: 174 IRAIAEKYNLK 184


>gi|284033881|ref|YP_003383812.1| GMP synthase large subunit [Kribbella flavida DSM 17836]
 gi|283813174|gb|ADB35013.1| GMP synthase, large subunit [Kribbella flavida DSM 17836]
          Length = 518

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 62/187 (33%), Gaps = 22/187 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKD- 68
            +R  V    +L A+SGG DS      +   + D      + + + VDH L+    +   
Sbjct: 211 LIRQQVGDKQVLCALSGGVDSAVAAALVSKAIGD------QLTCVYVDHGLQRAGESDQI 264

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAK---TINAT 120
           E  +V+   +RL +      + ++      P+       RE      +   K     +  
Sbjct: 265 EKDFVAVTGTRLEVVEVEQQFLSALAGVTDPEQKRKIVGREFIRTFEATARKLDAERHIE 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R  
Sbjct: 325 FLVQGTLYPDVVES-----GGGTGAANIKSHHNVGGLPDDLQFSLIEPLRTLFKDEVREL 379

Query: 181 LLQRNIS 187
            L   + 
Sbjct: 380 GLALGLP 386


>gi|83942322|ref|ZP_00954783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. EE-36]
 gi|83846415|gb|EAP84291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. EE-36]
          Length = 380

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 50/231 (21%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--L 62
           P+ S+ F          ++VA+SGG DS  +   L     D     ++      DH   L
Sbjct: 8   PLNSLGFA--KAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLY----DHGAAL 61

Query: 63  -RET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---------------- 102
            R+    A  ++     V   +   H V+ ++N      +   A                
Sbjct: 62  ARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRCN 121

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD------- 155
              ++  + E AK ++A  + T H             QR     G  L    D       
Sbjct: 122 ERVKFKDLLETAKDLDADCMATGH-----------YIQRKMGPDGAELHCAADANRDQSY 170

Query: 156 ---TILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +   +   ++  P      + D R+   +  +S  + P + D  F   
Sbjct: 171 FLFSTTPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPN 221


>gi|325684365|gb|EGD26534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 375

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++       +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTNDDGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++    +           A R          E ++    E+A  ++
Sbjct: 61  KVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  +   H      D+   T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKR----VMFPLQDLTK 176

Query: 175 EDIRSFLLQRNI 186
            ++R    +  +
Sbjct: 177 PEVRRIAEEAGL 188


>gi|300811318|ref|ZP_07091815.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497682|gb|EFK32707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 375

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++       +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTNDDGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++    +           A R          E ++    E+A  ++
Sbjct: 61  KVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  +   H      D+   T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKR----VMFPLQDLTK 176

Query: 175 EDIRSFLLQRNI 186
            ++R    +  +
Sbjct: 177 PEVRRIAEEAGL 188


>gi|301063575|ref|ZP_07204092.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [delta proteobacterium NaphS2]
 gi|300442307|gb|EFK06555.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [delta proteobacterium NaphS2]
          Length = 518

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 41/236 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    ++  +SGG DS    + LH  + D        S I VD+  LR   KDE R
Sbjct: 215 LREKLGGKRVICGLSGGVDSSVTAVLLHEAVGD------NLSCILVDNGLLR---KDEAR 265

Query: 72  YVSDVCSR-LRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  V      I   +V             + P+       RE       + A+  +A  
Sbjct: 266 KVVAVFQEYYGIDLHLVDASKHFLDCLSGVTDPEEKRKIIGREFINIFEKKAAELGSAQY 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V  +      +    + G+ +     +NL +  P     ++++R   
Sbjct: 326 LAQGTLYPDVIESVSFKGPSATIKSHHNVGGLPEV----MNLKLVEPLRELFKDEVREVG 381

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           ++  +                  R  V         L ++   ++  +    + + 
Sbjct: 382 IELGLP-----------------RELVMRQPFPGPGLAIRILGEITAERLEILRLA 420


>gi|291523374|emb|CBK81667.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Coprococcus catus GD/7]
          Length = 513

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  +    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVETTIKSLREKIGDGKVLCALSGGVDSSVAAVLLSKAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|283769417|ref|ZP_06342315.1| GMP synthase (glutamine-hydrolyzing) [Bulleidia extructa W1219]
 gi|283103942|gb|EFC05327.1| GMP synthase (glutamine-hydrolyzing) [Bulleidia extructa W1219]
          Length = 513

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 29/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+A+SGG DS  +   LH  +        +   + +DH  LR+    E  
Sbjct: 209 IRTKVGSDKVLLALSGGVDSSVVAALLHKAI------GSQLHCMFIDHGLLRKG---EAE 259

Query: 72  YV-SDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR-----EARYAL---ISEHAKTIN 118
            V       + I  + V     + N           R     E  Y     + +  K ++
Sbjct: 260 SVMKTFAKNMNIQLTKVDASKRFLNKLKGVSDPEQKRKIIGNEFVYTFQDEVQKLLKGVD 319

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  DLN  +  P  +  ++++R
Sbjct: 320 IHWLAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDLNFKLIEPLNKLFKDEVR 373

Query: 179 SFLLQRNIS 187
           +  ++  + 
Sbjct: 374 TLGIELGLP 382


>gi|259046678|ref|ZP_05737079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella adiacens ATCC 49175]
 gi|259036843|gb|EEW38098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella adiacens ATCC 49175]
          Length = 374

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 65/194 (33%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 7   RVVVGMSGGVDSSVTALLLKEAGYDVIGIFMKNWDDTDENGVCT--------ATEDYKDV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAKTI 117
           + V  ++ I +  V+++            RE R                +    ++A  +
Sbjct: 59  AAVAEQIGIPYYSVNFEKEYWDRVFEYFLREYRLGRTPNPDVMCNKEVKFQAFLDYALQL 118

Query: 118 NATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  +   H      D+      +R + +  ++   LS +    L         P     
Sbjct: 119 GADYVAMGHYARVEKDENGIVHLLRGKDNNKDQTYFLSQLNQKQLEKAMF----PIGHLE 174

Query: 174 REDIRSFLLQRNIS 187
           ++++R    + +++
Sbjct: 175 KKEVREIAEKYDLA 188


>gi|307707803|ref|ZP_07644280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis NCTC 12261]
 gi|307616063|gb|EFN95259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis NCTC 12261]
          Length = 373

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++     +      A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDSVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRKLAEEAGLA 189


>gi|229543733|ref|ZP_04432793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus coagulans 36D1]
 gi|229328153|gb|EEN93828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus coagulans 36D1]
          Length = 371

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 42/203 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRET 65
           ++       ++V +SGG DS      L         +         +    +        
Sbjct: 1   MQKAPKDTRVVVGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDDTDENGVCT-------- 52

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YAL 109
           A ++   V  VC+++ I +  V+++     K  T  +   R  R             +  
Sbjct: 53  ATEDYNDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKA 112

Query: 110 ISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
             EHA  + A  + T H       D   E   +R      ++   L+ +    L      
Sbjct: 113 FLEHALNLGADYLATGHYARVTHQD--GEYKMLRGVDGNKDQTYFLNQLGQYQLSR---- 166

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     +  +R    +  ++
Sbjct: 167 VMFPIGDLEKPRVREIAKEAGLA 189


>gi|169351304|ref|ZP_02868242.1| hypothetical protein CLOSPI_02084 [Clostridium spiroforme DSM 1552]
 gi|169292366|gb|EDS74499.1| hypothetical protein CLOSPI_02084 [Clostridium spiroforme DSM 1552]
          Length = 515

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 24/196 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   + +      + + + VDH  L
Sbjct: 201 SFVEEQVKAIREKVGNGKVLCALSGGVDSSVAAVLLSKAIGN------QLTCVFVDHGLL 254

Query: 63  RETAKDEVRYV----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISE 112
           R+   DEV  V          L         +      G+     + +        +  E
Sbjct: 255 RKNEGDEVEEVFGPNGHY--ELNFIRVNAQQRYYDKLKGIEEPEAKRKIIGEEFIRVFEE 312

Query: 113 HAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            AK I     ++    + D +E+     +    +    + G+ D + +     I  P   
Sbjct: 313 EAKKIGTVDFLVQGTIYPDVVESGL-GGESAVIKSHHNVGGLPDAVDFK---EIIEPLRD 368

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R   L+  I 
Sbjct: 369 LFKDEVRKVGLELGIP 384


>gi|327463811|gb|EGF10127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1057]
          Length = 373

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 63/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H    Q+   +   +   R      ++   LS +    L         P
Sbjct: 117 LTLGADYVATGHYA--QVKRDKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKTEVRAIAERAGLA 189


>gi|296446642|ref|ZP_06888583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylosinus trichosporium OB3b]
 gi|296255870|gb|EFH02956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylosinus trichosporium OB3b]
          Length = 411

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/221 (19%), Positives = 69/221 (31%), Gaps = 54/221 (24%)

Query: 16  LVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA--- 66
           L  PA    ++VA+SGG DS  +   L     D     ++      DH     R+ +   
Sbjct: 19  LPKPAQDTRVVVAMSGGVDSSVVAALLAEQGYDVVGVTLQLY----DHGEAVHRKGSCCA 74

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------- 109
             ++     V +RL I H V+ ++    +T +   A+   YA                  
Sbjct: 75  GQDIHDARRVAARLGIPHYVLDFETRFRETVIDTFAQS--YASGETPVPCVACNQFVKFV 132

Query: 110 -ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL---------- 158
            + E AK + A  + T H                    G GL    D             
Sbjct: 133 DLFETAKDLGADALATGH-----------YIASRPGRGGRGLYRAMDAARDQSYFLFATT 181

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                 +  P     + D+R    + ++   E P + D  F
Sbjct: 182 RPQLDMLRFPLGEYAKPDVRELARRFDLDVAEKPDSQDICF 222


>gi|316934639|ref|YP_004109621.1| GMP synthase large subunit [Rhodopseudomonas palustris DX-1]
 gi|315602353|gb|ADU44888.1| GMP synthase, large subunit [Rhodopseudomonas palustris DX-1]
          Length = 540

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 45/197 (22%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR   KDE +
Sbjct: 236 IRTQVGSGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLLR---KDEGK 286

Query: 72  YVSDVCSRL-RIAHSVVSW--------------KNSKPQTG------LMAAAREARYALI 110
            V D+      I    V                +  +   G        A AR       
Sbjct: 287 AVVDLFRHHYNIPLVHVDASETFLGALKGVTDPEQKRKTIGKLFIDVFEAEARRV----- 341

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                   A  +     + D +E+V   S        +        +   +N+ +  P  
Sbjct: 342 ------GGADFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPARMNMKLVEPLR 392

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 393 ELFKDEVRALGRELGLP 409


>gi|152980120|ref|YP_001353722.1| GMP synthase [Janthinobacterium sp. Marseille]
 gi|226739634|sp|A6SZM5|GUAA_JANMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|151280197|gb|ABR88607.1| GMP synthase (glutamine-hydrolysing) [Janthinobacterium sp.
           Marseille]
          Length = 539

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 28/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR    DE +
Sbjct: 217 IRQQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLR---LDEGK 267

Query: 72  YVSD-VCSRLRI-AHSVVSWK--------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +     L +    + +           S P+       RE       E  K  NA  
Sbjct: 268 MVMEMFAESLGVNVIHIDAVDQFMGHLAGVSDPEAKRKIIGREFVEVFQVEAGKRKNAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +     + D +E+          +KG  +        +   LNL +  P     ++++R 
Sbjct: 328 LAQGTIYPDVIESA------GKGKKGHTIKSHHNVGGLPETLNLQLLEPLRELFKDEVRK 381

Query: 180 FLLQRNISW 188
             +   +  
Sbjct: 382 LGVALGLPH 390


>gi|77360631|ref|YP_340206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|123588218|sp|Q3IH16|MNMA_PSEHT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76875542|emb|CAI86763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 366

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A D+++  
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNDEYCAAADDLKDA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC +L I    V++             A  +  R               A +   A+ 
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQA 119

Query: 117 INATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A  I T H       DD+         R   +       +       +   +  P   
Sbjct: 120 LGADFIATGHYVRRELRDDK-----YVMCRGLDDNKDQSYFLYTLSHEHIGQTLF-PVGD 173

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++++
Sbjct: 174 IAKPEVRRIAEEQDL 188


>gi|225573524|ref|ZP_03782279.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039121|gb|EEG49367.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM
           10507]
          Length = 362

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 64/234 (27%), Gaps = 70/234 (29%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKD----- 68
             +++ +SGG DS      L     +      +++  +            E+A D     
Sbjct: 4   KRVVIGMSGGVDSSVAAYLLKKAGYEVLGVTMKTWTPV-----------SESADDPGLGG 52

Query: 69  ---EVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYAL 109
               +    +V   L I++ VV ++                            R  ++  
Sbjct: 53  SPEVIEDAKEVARALGISYYVVDFQRDFSDYVVDYFTQEYLEGRTPNPCVVCNRYVKWEA 112

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---- 165
           +   AK + A  I T H           R      E G      C+    D    +    
Sbjct: 113 LLNKAKELGADYIATGHYA---------RIV--CLENGRYALKTCEVSAKDQTYALYNLT 161

Query: 166 -------SRPFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFERVRVRR 206
                    P     +E+IR    +  +   + P +       D  +    +R+
Sbjct: 162 QAQLAHTLMPVGDYNKEEIREIASKIGLPVADKPDSQEICFIPDHDYA-NFIRQ 214


>gi|76789009|ref|YP_328095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis A/HAR-13]
 gi|123606993|sp|Q3KM75|MNMA_CHLTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|76167539|gb|AAX50547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis A/HAR-13]
          Length = 358

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 63/204 (30%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RET-----AKDE 69
           ++VA+SGG DS  +   L      +  G+           L       ++      A  +
Sbjct: 5   VIVAMSGGVDSSVVAYLL------KKQGEYNVV------GLFMKNWGEQDENGECTATKD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEH 113
            R V  +  +L I +  VS+     +      L   A            RE ++ L+ + 
Sbjct: 53  FRDVERIAEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKK 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNL 163
            + +    + T H              R     G GLS   D              D   
Sbjct: 113 VRELKGDFLATGH------------YCRG-GADGTGLSRGIDPNKDQSYFLCGTPKDALS 159

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + ++R    +  ++
Sbjct: 160 NVLFPLGGVYKTEVRRIAQEAGLA 183


>gi|323341584|ref|ZP_08081819.1| GMP synthase [Lactobacillus ruminis ATCC 25644]
 gi|323091000|gb|EFZ33637.1| GMP synthase [Lactobacillus ruminis ATCC 25644]
          Length = 520

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS      L+  + D      + + I VDH  LR+    E +
Sbjct: 219 IKEEVGDKKVILGLSGGVDSSVTAALLNKAIGD------QLTCIFVDHGLLRKN---EAQ 269

Query: 72  YVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D +   L +    V             S P+        E       E  K  +   
Sbjct: 270 QVMDALGKGLGVNIIKVDAAKRFLGKLEGVSDPEKKRKIIGAEFIEVFNEEALKLKDVDF 329

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  D++  +  P     +++ R   
Sbjct: 330 LAQGTLYTDVIE------SGTDTAKTIKSHHNVGGLPEDMHFKLIEPLRTLFKDETRELG 383

Query: 182 LQRNISW 188
            +  I  
Sbjct: 384 EKLGIPH 390


>gi|154483751|ref|ZP_02026199.1| hypothetical protein EUBVEN_01455 [Eubacterium ventriosum ATCC
           27560]
 gi|149735242|gb|EDM51128.1| hypothetical protein EUBVEN_01455 [Eubacterium ventriosum ATCC
           27560]
          Length = 471

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 157 SFVEESIKAIREKVGDGKVLCALSGGVDSSVAAVMLSKAIGK------QLTCVFVDHGLL 210

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 211 RKNEGDEVEAV 221


>gi|147676587|ref|YP_001210802.1| ATP-utilizing enzymes [Pelotomaculum thermopropionicum SI]
 gi|146272684|dbj|BAF58433.1| ATP-utilizing enzymes [Pelotomaculum thermopropionicum SI]
          Length = 269

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 35/183 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LVA SGG DS  +L A    L +++       A+++   L      E    + +   
Sbjct: 19  GSVLVAFSGGVDSTFVLKAAVDALKEKA------VAVTITGELYP--PGETEEAARLARF 70

Query: 80  LRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L   H ++  ++    T            ++  Y  I + A+      ++     DD   
Sbjct: 71  LGAEHIIIENRDLDNPTFASNPPDRCYHCKKNEYGEILKVARERGFNAVIDGLNADD--- 127

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCED 191
                           LS     I     L +  P   +   +E+IR+      +   + 
Sbjct: 128 ----------------LSDYRPGIRAGQELGVHSPLKDVGLTKEEIRALSRNFGLPTADK 171

Query: 192 PSN 194
           PSN
Sbjct: 172 PSN 174


>gi|332535582|ref|ZP_08411352.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035000|gb|EGI71520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 366

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A D+++  
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNDEYCAAADDLKDA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC +L I    V++             A  +  R               A +   A+ 
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQA 119

Query: 117 INATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A  I T H       DD+   V  R   +  ++   L  +    +         P   
Sbjct: 120 LGADFIATGHYVRRELRDDKY--VMCRGLDNNKDQSYFLYTLSHEHI----GQTLFPVGD 173

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++++
Sbjct: 174 IEKPEVRRIAEEQDL 188


>gi|310821570|ref|YP_003953928.1| gmp synthase [Stigmatella aurantiaca DW4/3-1]
 gi|309394642|gb|ADO72101.1| GMP synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 517

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+     R +     ++  +SGG DS    + LH  +        +   I VD+  LR+ 
Sbjct: 208 EAEEAIRRQVGAEGRVICGLSGGVDSSVAALLLHRAI------GPRLQCIFVDNGLLRQD 261

Query: 66  AKD--EVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHA 114
            +   E  +V     R  +    V  +          + P+       RE          
Sbjct: 262 ERAQVEALFV----DRFHVPLKTVDARERFLQKLAGVTDPEKKRKTIGREFIAVFEEAAR 317

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +A  +     + D +E+V  +      +    + G+ +     + L +  P     +
Sbjct: 318 EVQDAGFLAQGTLYPDVIESVSYKGPSVTIKSHHNVGGLPEQ----MKLKLVEPLRELFK 373

Query: 175 EDIRSFLLQRNIS 187
           +++R    +  + 
Sbjct: 374 DEVRVLGRELGLP 386


>gi|115377691|ref|ZP_01464884.1| GMP synthase (glutamine-hydrolyzing) [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365297|gb|EAU64339.1| GMP synthase (glutamine-hydrolyzing) [Stigmatella aurantiaca
           DW4/3-1]
          Length = 530

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 26/193 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+     R +     ++  +SGG DS    + LH  +        +   I VD+  LR+ 
Sbjct: 221 EAEEAIRRQVGAEGRVICGLSGGVDSSVAALLLHRAI------GPRLQCIFVDNGLLRQD 274

Query: 66  AKD--EVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHA 114
            +   E  +V     R  +    V  +          + P+       RE          
Sbjct: 275 ERAQVEALFV----DRFHVPLKTVDARERFLQKLAGVTDPEKKRKTIGREFIAVFEEAAR 330

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +A  +     + D +E+V  +      +    + G+ +     + L +  P     +
Sbjct: 331 EVQDAGFLAQGTLYPDVIESVSYKGPSVTIKSHHNVGGLPEQ----MKLKLVEPLRELFK 386

Query: 175 EDIRSFLLQRNIS 187
           +++R    +  + 
Sbjct: 387 DEVRVLGRELGLP 399


>gi|219667493|ref|YP_002457928.1| GMP synthase [Desulfitobacterium hafniense DCB-2]
 gi|219537753|gb|ACL19492.1| GMP synthase, large subunit [Desulfitobacterium hafniense DCB-2]
          Length = 510

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 40/202 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S I++    +R  V    +L A+SGG DS    + +H  + D      + + + VDH   
Sbjct: 200 SFIDAQVKAIREKVGDRQVLCALSGGVDSSVAAVLVHKAIGD------QLTCVFVDHGFM 253

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V      +  +    V  +          S P+T  +    E       E
Sbjct: 254 RKN---EPEQVKKIFTEQFHLKLIFVDARERFMAKIGGVSDPETKRIGIGNEFIRLFEDE 310

Query: 113 HAKTINATLIMTAH-------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
             K      ++          +  D  ET+                     +  D+   +
Sbjct: 311 ARKLGQIDFLVQGTLYPDIVESGTDTAETI-------------KSHHNVGGLPEDMQFEL 357

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     ++++R    +  I 
Sbjct: 358 IEPLDMLFKDEVREVGAELGIP 379


>gi|302787685|ref|XP_002975612.1| hypothetical protein SELMODRAFT_54559 [Selaginella moellendorffii]
 gi|300156613|gb|EFJ23241.1| hypothetical protein SELMODRAFT_54559 [Selaginella moellendorffii]
          Length = 337

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 57/217 (26%), Gaps = 47/217 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCL-----RETAKD 68
             IL+  SGG  S   L  L  + S+       +        + +D  L     RE    
Sbjct: 48  DRILLGFSGGPSSRVALEFLAEIRSEALASRALNAPGFGLGVVFIDEGLAIGTSREERSR 107

Query: 69  EVRYVSDVCSRLRIAHSVVS--------------------WKNSKPQTGLMAAAREARYA 108
            V  V  + SRL +   V                        + K  TG        R  
Sbjct: 108 AVDVVEKIVSRLELPLVVRRLEEVFDDDNQEDCATQLKNLLDSVKDGTGKEDIVEILRME 167

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--IS 166
           L+ + AK    T ++          T           KG G +        D      + 
Sbjct: 168 LLEQVAKKEGYTKLVLG-----LSTTRIAARVVSATAKGQGFALAAGVQYVDSRWHAPVV 222

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
            P   C  +++       ++         +  F R  
Sbjct: 223 LPLRDCATKELALLCHFFHL---------ETLFLRNF 250


>gi|209884347|ref|YP_002288204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oligotropha carboxidovorans OM5]
 gi|229486419|sp|B6JCC3|MNMA_OLICO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|209872543|gb|ACI92339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oligotropha carboxidovorans OM5]
          Length = 393

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 60/203 (29%), Gaps = 48/203 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEVRYVS 74
            ++VA+SGG DS      L +   D     ++      DH     R+    A  ++    
Sbjct: 15  RVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLY----DHGEATHRKGACCAGQDIHDAR 70

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
           DV  R+ I H V+ +++   ++ +   A                R  ++  +   A+ + 
Sbjct: 71  DVAERIGIPHYVLDYESRFRESVIDRFAESYALGETPVPCIECNRSVKFRDLLTTAQELG 130

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----------- 167
           A  + T H                    G            D + ++             
Sbjct: 131 AQALATGH-----------YVASRRQPDGSRAMVCAADADRDQSYFLFATTQDQLNHLRF 179

Query: 168 PFLRCRREDIRSFLLQRNISWCE 190
           P     +   R    + ++   E
Sbjct: 180 PLGDMTKAQTRELARRFDLPVAE 202


>gi|23099469|ref|NP_692935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase
           [Oceanobacillus iheyensis HTE831]
 gi|30173412|sp|Q8CXC7|MNMA_OCEIH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|22777698|dbj|BAC13970.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Oceanobacillus iheyensis HTE831]
          Length = 371

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 71/217 (32%), Gaps = 45/217 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   KDTRVVVGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDDTDEFGVCT--------ATEDF 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHA 114
             V  VC++L I +  V+++                A R          E ++    +HA
Sbjct: 57  DDVVRVCNQLEIPYYSVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 116

Query: 115 KTINATLIMTAHTF------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H        + ++E   +R   +  ++   L+ + +    D+   +  P
Sbjct: 117 LALGADYLATGHYAQVRRDKNGRVE--MLRGNDENKDQTYFLNQLSE----DVLDKVMFP 170

Query: 169 FLRCRREDIRSFLLQRNISWCE--DPSNTDDRFERVR 203
                + ++R    +  +   E  D +      ER  
Sbjct: 171 LGHLPKSEVRKIAKEHELVTAEKKDSTGICFIGERNF 207


>gi|315282423|ref|ZP_07870840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria marthii FSL S4-120]
 gi|313613928|gb|EFR87655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria marthii FSL S4-120]
          Length = 371

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIAKKAGLA 189


>gi|313608681|gb|EFR84517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL F2-208]
          Length = 371

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIAKKAGLA 189


>gi|255023815|ref|ZP_05295801.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           J1-208]
          Length = 291

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIAKKAGLA 189


>gi|290893871|ref|ZP_06556849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J2-071]
 gi|290556588|gb|EFD90124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J2-071]
          Length = 371

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIAKKAGLA 189


>gi|227529026|ref|ZP_03959075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351038|gb|EEJ41329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 377

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 45/197 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAKTI 117
           + V +++ I +  V+++        K         R          E ++    ++A  +
Sbjct: 60  AKVATKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIDYANQL 119

Query: 118 NATLIMTAHTFDDQLETVY-------MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  + T H  D              M   R   +       +   + Y     +  P  
Sbjct: 120 GADYVATGHYAD------LKRDADGRMHLMRAKDQNKDQTYFLSQ-LDYQQLDKVLFPLA 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + +IR    +  ++
Sbjct: 173 NYTKPEIRQIAEEAGLA 189


>gi|241207252|ref|YP_002978348.1| GMP synthase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861142|gb|ACS58809.1| GMP synthase, large subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 520

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE  
Sbjct: 216 IREQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEAA 266

Query: 72  YVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      L + H   + +        S P+T      R        E  K   A  
Sbjct: 267 GVVAMFREHYNLHLLHVDAADRFIGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGADF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + + +  P     ++++R+  
Sbjct: 327 LGQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  + 
Sbjct: 384 RELGLP 389


>gi|46907740|ref|YP_014129.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes serotype
           4b str. F2365]
 gi|226224113|ref|YP_002758220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes Clip81459]
 gi|254824429|ref|ZP_05229430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J1-194]
 gi|254852136|ref|ZP_05241484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL R2-503]
 gi|254931447|ref|ZP_05264806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HPB2262]
 gi|254993966|ref|ZP_05276156.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           J2-064]
 gi|300764822|ref|ZP_07074812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N1-017]
 gi|67461977|sp|Q71ZF8|MNMA_LISMF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|259495831|sp|C1KVF9|MNMA_LISMC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46881009|gb|AAT04306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|225876575|emb|CAS05284.1| Putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258605439|gb|EEW18047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL R2-503]
 gi|293582998|gb|EFF95030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HPB2262]
 gi|293593665|gb|EFG01426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL J1-194]
 gi|300514498|gb|EFK41555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N1-017]
 gi|328465550|gb|EGF36779.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 1816]
 gi|328474873|gb|EGF45673.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 220]
 gi|332311954|gb|EGJ25049.1| tRNA-specific 2-thiouridylase mnmA [Listeria monocytogenes str.
           Scott A]
          Length = 371

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIAKKAGLA 189


>gi|323704377|ref|ZP_08115956.1| Queuosine synthesis-like protein [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536443|gb|EGB26215.1| Queuosine synthesis-like protein [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 275

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 42/194 (21%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              E+++ ++  L      ++A SGG DS  L    + VL DR        A++      
Sbjct: 5   EKYENLKKYIEKLGSA---VIAFSGGVDSTFLAKVCYDVLKDR------CVAVT------ 49

Query: 64  ETAK----DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEH 113
            T+      E +   ++  ++ I H ++  +       SK         +   ++ +   
Sbjct: 50  ATSSTYPQREFKEAQELAKQIGIRHRIIRSEELEIEGFSKNPIDRCYYCKSELFSKLKNV 109

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+      ++    +DD                  G          +L +          
Sbjct: 110 AEEEGIEYVLDGTNYDD-----------------TGDFRPGRRAARELGVKSPLLECGFT 152

Query: 174 REDIRSFLLQRNIS 187
           + DIR       + 
Sbjct: 153 KNDIREMSKILGLP 166


>gi|218134933|ref|ZP_03463737.1| hypothetical protein BACPEC_02838 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990318|gb|EEC56329.1| hypothetical protein BACPEC_02838 [Bacteroides pectinophilus ATCC
           43243]
          Length = 513

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ +    +L A+SGG DS    + L   +        + + + VDH  LR+   DEV 
Sbjct: 209 LRTKIGSGKVLCALSGGVDSSVAAVLLAKAVGK------QLTCVFVDHGLLRKDEGDEVE 262

Query: 72  YVS--DVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAKTINA-TLI 122
            V   D    L         +  +   G+    R+ +        +  E AK I A   +
Sbjct: 263 AVFGPDGPYDLNFIRVNAQERFYEKLKGVEEPERKRKIIGEEFIRVFEEEAKKIGAVDYL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +    + D +E+     +    +    + G+ D + +     I  P     ++++R   L
Sbjct: 323 VQGTIYPDVIESGL--GKSATIKSHHNVGGLPDYVDFK---EIVEPLRDLFKDEVRRAGL 377

Query: 183 QRNIS 187
           +  I 
Sbjct: 378 ELGIP 382


>gi|331269731|ref|YP_004396223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum BKT015925]
 gi|329126281|gb|AEB76226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum BKT015925]
          Length = 346

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 52/199 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + + +SGG DS      L     D     +K             +  +V    + V  
Sbjct: 3   KKVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKV------------SDVDVSEDAAKVAE 50

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLI 122
           +L I + ++  ++      +   A E                 ++ ++ E AK + A  I
Sbjct: 51  KLDIPYHILDLRDEFKNRVIDNFAEEYLQGRTPNPCAMCNKYIKFGVLLEKAKELGADYI 110

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGL-----------SGMCDTILYDLNLWISRPFLR 171
            T H              R     G  L           + M  ++  D+   I  P   
Sbjct: 111 ATGHYA------------RVEEHNGRYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGE 158

Query: 172 CRREDIRSFLLQRNISWCE 190
             +  IR       +   +
Sbjct: 159 YTKVQIREIARNLGLEVHD 177


>gi|312864108|ref|ZP_07724343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis F0396]
 gi|322515817|ref|ZP_08068761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
 gi|311100340|gb|EFQ58548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis F0396]
 gi|322125703|gb|EFX97025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
          Length = 373

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAHTFDDQL---ETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H    Q+   E   +   R      ++   LS +    L         P   
Sbjct: 120 GADYVATGHYA--QVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMF----PLGH 173

Query: 172 CRREDIRSFLLQRNIS 187
            ++ ++R    +  ++
Sbjct: 174 LQKPEVREIAERVGLA 189


>gi|295695739|ref|YP_003588977.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Bacillus tusciae DSM 2912]
 gi|295411341|gb|ADG05833.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Bacillus tusciae DSM 2912]
          Length = 363

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 56/205 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----------AKD 68
              ++VA+SGG DS      L     D          I +   LR            + D
Sbjct: 3   KGTVVVAMSGGVDSSVTAALLKERGYD---------VIGITMRLRGGEETSSGRGCCSVD 53

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGL---MAAAREAR-------------YALISE 112
           +V     VC  L I    V+++ +  +  +       +  R             Y L+ E
Sbjct: 54  DVSDARRVCQSLGIPFYAVNYREAFEKRVIQYFEDEYKRGRTPNPCIACNMYMKYDLLLE 113

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
            A  + A  + T H        V     R     G  +    +    D    +       
Sbjct: 114 QAVDLGADYLATGHYAR-----VLYDESR-----GRYVLRKAEDRRKDQTYVLYHLTQEQ 163

Query: 168 ------PFLRCRREDIRSFLLQRNI 186
                 P     + ++R    +  +
Sbjct: 164 LARTLFPLGEYEKSEVREMARKFGL 188


>gi|295397034|ref|ZP_06807148.1| GMP synthase [Aerococcus viridans ATCC 11563]
 gi|294974725|gb|EFG50438.1| GMP synthase [Aerococcus viridans ATCC 11563]
          Length = 528

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R LV    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   +EV 
Sbjct: 227 IRELVGEGKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKNEAEEVM 280

Query: 72  YVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR-------YALISEHAKTINATLI 122
               +  +  +    V  ++       G+    R+ +       Y    E  K  +   +
Sbjct: 281 --ETLGGKFGLNIIKVDAEDRFLSKLAGVSDPERKRKIIGNEFVYVFDDEAQKIKDVDYL 338

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R+   
Sbjct: 339 AQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMTFSLIEPLNTLFKDEVRAVGT 392

Query: 183 QRN----ISWC 189
           +      I W 
Sbjct: 393 ELGMPDKIVWR 403


>gi|260439327|ref|ZP_05793143.1| GMP synthase [Butyrivibrio crossotus DSM 2876]
 gi|292808337|gb|EFF67542.1| GMP synthase [Butyrivibrio crossotus DSM 2876]
          Length = 514

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 209 IRAKVGNGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKNEGDEVE 262

Query: 72  YV----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAKTINA-T 120
            V          L         +      G+    R+ +        +  E AK I A  
Sbjct: 263 QVFGPNGQF--DLNFIRVNAQERYYSKLAGVTEPERKRKIIGEEFIRVFEEEAKKIGAVD 320

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+     +    +    + G+ D + +     I  P     ++++R  
Sbjct: 321 FLAQGTIYPDVVESGL-GGESAVIKSHHNVGGLPDYVDFK---EIIEPLRNLFKDEVRKA 376

Query: 181 LLQRNIS 187
            L+  I 
Sbjct: 377 GLELGIP 383


>gi|55821970|ref|YP_140412.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus LMG
           18311]
 gi|55823887|ref|YP_142328.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus
           CNRZ1066]
 gi|81558821|sp|Q5LXJ9|MNMA_STRT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81560008|sp|Q5M249|MNMA_STRT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|55737955|gb|AAV61597.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptococcus thermophilus LMG 18311]
 gi|55739872|gb|AAV63513.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Streptococcus thermophilus CNRZ1066]
 gi|312279316|gb|ADQ63973.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus thermophilus ND03]
          Length = 373

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H    Q+   E   +   R      ++   LS +    L         P
Sbjct: 117 MTLGADYVATGHYA--QVVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ ++R    +  ++
Sbjct: 171 LGHLQKPEVREIAERAGLA 189


>gi|298487541|ref|ZP_07005583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157925|gb|EFH99003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 376

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 12  KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 63

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 64  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 123

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 124 LGADLIATGHYVRRRDTDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 179

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 180 KPEVRAIAEKHGLA 193


>gi|332686364|ref|YP_004456138.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Melissococcus plutonius ATCC 35311]
 gi|332370373|dbj|BAK21329.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Melissococcus plutonius ATCC 35311]
          Length = 373

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++  I +    +        A ++ + V
Sbjct: 7   RVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWEDIDENGVCT--------ATEDYKDV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            +  R  R             +     +A  +
Sbjct: 59  AKVADQIGIPYYSVNFEKEYWDHVFEYFLSEYRNGRTPNPDVMCNKEIKFKAFLNYAMQL 118

Query: 118 NATLIMTAHTFDDQLE------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  I T H    Q+E         +R      ++   LS +    L         P   
Sbjct: 119 GADYIATGHYA--QIERTEDGNVRLLRGIDTNKDQTYFLSQLSQEQLSKAMF----PLGG 172

Query: 172 CRREDIRSFLLQRNIS 187
             +  +R    + N++
Sbjct: 173 MEKTQVREIAAKANLA 188


>gi|167770355|ref|ZP_02442408.1| hypothetical protein ANACOL_01698 [Anaerotruncus colihominis DSM
           17241]
 gi|167667677|gb|EDS11807.1| hypothetical protein ANACOL_01698 [Anaerotruncus colihominis DSM
           17241]
          Length = 510

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 38/193 (19%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  +    +L+A+SGG DS      L   +        + + I VDH L R+   DEV
Sbjct: 208 ALRHKIGSGKVLLALSGGVDSSVAAALLSRAVGK------QLTCIFVDHGLMRKNEGDEV 261

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA----AREAR------YALISEHAKTIN-A 119
              +    R       V     +   G +A      R+ +        +  E AK I   
Sbjct: 262 E--AAFADR---DIHFVRVNAGERFLGKLAGVDDPERKRKIIGEEFIRVFEEEAKKIGHV 316

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGM-----GLSGMCDTILYDLNLWISRPFLRCRR 174
             +     + D +E+          +  +      + G+ D + +     I  P     +
Sbjct: 317 DYLAQGTIYPDVIES-------GAGDAAVIKSHHNVGGLPDYVDFK---EIVEPLRLLFK 366

Query: 175 EDIRSFLLQRNIS 187
           ++ R+   +  + 
Sbjct: 367 DETRALGRELGLP 379


>gi|303260932|ref|ZP_07346881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303269624|ref|ZP_07355383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS458]
 gi|301801084|emb|CBW33752.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae INV200]
 gi|302637769|gb|EFL68255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640826|gb|EFL71214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS458]
 gi|332077431|gb|EGI87892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA41301]
          Length = 373

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|329724654|gb|EGG61160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU144]
          Length = 372

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIRRHDDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    ++N++
Sbjct: 173 IEKSEVRRIAEEQNLA 188


>gi|294010559|ref|YP_003544019.1| GMP synthase (glutamine-hydrolyzing) [Sphingobium japonicum UT26S]
 gi|292673889|dbj|BAI95407.1| GMP synthase (glutamine-hydrolyzing) [Sphingobium japonicum UT26S]
          Length = 519

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH L R     E  
Sbjct: 215 IRAQVGEGRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRLG---EAE 265

Query: 72  YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEHAKTI-NATL 121
            V  +      I    V+ +             E +             E AK I  A  
Sbjct: 266 QVVSLFREHYGIKLVHVNAEERFLGGLAGLTDPEKKRKFIGGEFIAVFEEEAKKIGGADF 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 326 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRVLG 382

Query: 182 LQRNIS 187
            +  + 
Sbjct: 383 RELGLP 388


>gi|257485430|ref|ZP_05639471.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330987933|gb|EGH86036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 366

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDTDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|220913321|ref|YP_002488630.1| GMP synthase [Arthrobacter chlorophenolicus A6]
 gi|219860199|gb|ACL40541.1| GMP synthase, large subunit [Arthrobacter chlorophenolicus A6]
          Length = 529

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 27/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ +  A ++  +SGG DS     A+ + L  R+ G  + + + VDH  LRE   ++V 
Sbjct: 218 IRNQIGDARVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLREGEAEQVE 271

Query: 72  --YVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKT-------- 116
             +V+    +L IA+    +       S P+T      RE   A                
Sbjct: 272 RDFVAATGVKLYIANEQERFLSALAGVSDPETKRKIIGREFIRAFEEAELAIIAEAAAHG 331

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E+             +        +  DL   +  P     +++
Sbjct: 332 EKIKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLQFELVEPLRALFKDE 386

Query: 177 IRSFLLQRNIS 187
           +R+   Q  + 
Sbjct: 387 VRAVGAQLGLP 397


>gi|89896684|ref|YP_520171.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Desulfitobacterium hafniense Y51]
 gi|89336132|dbj|BAE85727.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 510

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 40/202 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S I++    +R  V    +L A+SGG DS    + +H  + D      + + + VDH   
Sbjct: 200 SFIDAQVKAIREKVGERQVLCALSGGVDSSVAAVLVHKAIGD------QLTCVFVDHGFM 253

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V      +  +    V  +          S P+T  +    E       E
Sbjct: 254 RKN---EPEQVKKIFTEQFHLKLIFVDARERFMAKIGGVSDPETKRIGIGNEFIRLFEDE 310

Query: 113 HAKTINATLIMTAH-------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
             K      ++          +  D  ET+                     +  D+   +
Sbjct: 311 ARKLGQIDFLVQGTLYPDIVESGTDTAETI-------------KSHHNVGGLPEDMQFEL 357

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     ++++R    +  I 
Sbjct: 358 IEPLDMLFKDEVREVGAELGIP 379


>gi|27468222|ref|NP_764859.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867112|ref|YP_188761.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus epidermidis
           RP62A]
 gi|282875953|ref|ZP_06284820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis SK135]
 gi|293366421|ref|ZP_06613099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|30173406|sp|Q8CSA5|MNMA_STAES RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71153357|sp|Q5HNS9|MNMA_STAEQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27315768|gb|AAO04903.1|AE016748_137 (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637770|gb|AAW54558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis RP62A]
 gi|281294978|gb|EFA87505.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis SK135]
 gi|291319455|gb|EFE59823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735247|gb|EGG71539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU045]
 gi|329737370|gb|EGG73624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis VCU028]
          Length = 372

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIRRHDDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    ++N++
Sbjct: 173 IEKSEVRRIAEEQNLA 188


>gi|331003353|ref|ZP_08326856.1| GMP synthase [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330412623|gb|EGG92008.1| GMP synthase [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 517

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 69/197 (35%), Gaps = 30/197 (15%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +ES    ++  V    +L A+SGG DS    + L   + D        + + VDH  LR+
Sbjct: 205 VESSIKAIKEKVGNGKVLCALSGGVDSSVAAVMLSKAVGD------NLTCVFVDHGLLRK 258

Query: 65  TAKDEVRYV-------------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
              DEV  V              +   R     + VS    K +       R     +  
Sbjct: 259 NEGDEVEAVFGPNGNYKLNFIRVNAAERFYAKLAGVSEPEKKRKVIGEEFIR-----VFE 313

Query: 112 EHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           E AK I     ++    + D +E+     +    +    + G+ D + +     I  P  
Sbjct: 314 EEAKKIGKVDFLVQGTIYPDIVESGL-GGESVVIKSHHNVGGLPDYVDFK---EIIEPLR 369

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   L+  I 
Sbjct: 370 DLFKDEVRKAGLELGIP 386


>gi|308049705|ref|YP_003913271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ferrimonas balearica DSM 9799]
 gi|307631895|gb|ADN76197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ferrimonas balearica DSM 9799]
          Length = 367

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 56/199 (28%), Gaps = 48/199 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNW----------EEDDTEEYCAASQDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHSVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH-----TFDD-QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           A+ + A  I T H       +D Q E   +R      ++   L     T+ ++       
Sbjct: 117 AEALGADYIATGHYVRRRQREDGQFE--MLRGLDGNKDQSYFLY----TLGHEHVAQTLF 170

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + ++R    ++++
Sbjct: 171 PVGELEKPEVRRIAEEQDL 189


>gi|225407981|ref|ZP_03761170.1| hypothetical protein CLOSTASPAR_05202 [Clostridium asparagiforme
           DSM 15981]
 gi|225042484|gb|EEG52730.1| hypothetical protein CLOSTASPAR_05202 [Clostridium asparagiforme
           DSM 15981]
          Length = 291

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 75/263 (28%), Gaps = 50/263 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I +A SGG DS  LL A             +  A++ D  L  +   E+     V + 
Sbjct: 36  GDICLAFSGGVDSSLLLKAAVQAAE---HTGRQVWAVTFDSRLHPSCDLEIA--GRVAAE 90

Query: 80  LRIAHSVVSWKNSKPQ---TGLMAAAREARYALISEH---AKTINATLIMTAHTFDDQLE 133
           L   H V++    + +      +      +  L S     A+      I+     DD   
Sbjct: 91  LGGVHRVITVDELEQEEIRNNPVDRCYLCKRHLFSTLKAFARERGIKRILDGTNEDD--- 147

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCED 191
                           L      I     L I+ P   L   +  ++       IS    
Sbjct: 148 ----------------LHVYRPGIRALRELGITSPLADLHITKAQVKELAAWYGISVASR 191

Query: 192 PS----------NTDDRFE---RV-----RVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           PS          NT   ++   R+      +R  V       L+  + + +     +   
Sbjct: 192 PSTPCMATRIPYNTPIDYDMLRRIGEGEAYLRTLVGGNVRLRLHGDIARIEVDFAAMEQI 251

Query: 234 VAMLIPKYLTVHMRSIIAISQDI 256
           + +       +       I+ D+
Sbjct: 252 LGVKEQAAARLKELGFCYITLDL 274


>gi|156408487|ref|XP_001641888.1| predicted protein [Nematostella vectensis]
 gi|156229028|gb|EDO49825.1| predicted protein [Nematostella vectensis]
          Length = 1023

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 22/204 (10%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAKDEVRYVSDV 76
              +LV +SGG DS+ LL  LH          + F   A +VD    +++  + R +   
Sbjct: 795 GDRVLVCLSGGKDSLSLLHTLHQYQYQARAKGLTFDVGAATVD---PQSSGYDPRPLIPY 851

Query: 77  CSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            + L + +                 +    +  A+ + R       +       I T + 
Sbjct: 852 LATLGVPYFFEEQDILFFAPSIFTPEKHIKIAFASTKCR--KFILISWKKRTKKIRTGNY 909

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           F        M    +   +    +   +  + + +L I RPF+  R +D+R F  +    
Sbjct: 910 FKGITLIFIMSVFHNGLLR----TMKANYTVQEGDLRIIRPFVYVREKDLREFSTKAKFP 965

Query: 188 WCEDPSNTDDRFERVRVRRFVRDI 211
               P N    FE+ + R   + +
Sbjct: 966 VI--PENCPACFEQPKERHRTKQL 987


>gi|332638409|ref|ZP_08417272.1| GMP synthase [Weissella cibaria KACC 11862]
          Length = 517

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+   DEV 
Sbjct: 216 IRETVGDKKVLLGLSGGVDSSVVGVLLQRAIGD------QLTSIFVDHGLLRKNEADEVM 269

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
             + +  +  +    V  +          + P+        E       E AK      +
Sbjct: 270 --AALGGKFGLNIIKVDAQERFLTKLAGVTDPEQKRKIIGNEFIRVFDEEAAKLDGIDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R+   
Sbjct: 328 AQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRALGE 381

Query: 183 QRNISW 188
           +  +  
Sbjct: 382 KLGMPH 387


>gi|205822400|sp|Q030C8|MNMA_LACLS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 376

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 10  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 61

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ + +  V+++            A  R  R             +    ++A  +
Sbjct: 62  AAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMEL 121

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P     
Sbjct: 122 GADYVATGHYAQVRTDEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMF----PLGHLE 177

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 178 KPEVRRIAEKAGLA 191


>gi|205822381|sp|A2RLX1|MNMA_LACLM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 376

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 10  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 61

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ + +  V+++            A  R  R             +    ++A  +
Sbjct: 62  AAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMEL 121

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P     
Sbjct: 122 GADYVATGHYAQVRTDEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMF----PLGHLE 177

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 178 KPEVRRIAEKAGLA 191


>gi|187735243|ref|YP_001877355.1| GMP synthase, large subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425295|gb|ACD04574.1| GMP synthase, large subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 507

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 18/183 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  VSGG DS  L + LH          +   AI VD+  LR+    E  
Sbjct: 206 IRERVGNRQVVCGVSGGVDSTVLAVLLHE-------AGVNMRAIFVDNGLLRKN---EAE 255

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI--NATLIMTA 125
            V    +R+ +    V     +  +          R     L  +       +A ++   
Sbjct: 256 EVRANFARMNVEIETVDASERFLAALDGESDPEKKRRIIGGLFIDVFWDAVGDAEMLAQG 315

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E+    ++   +      + +   +       +  P     ++++R       
Sbjct: 316 TLYPDVIESA-SNAKSKASVIKTHHNRVERVLELQAQGKVLEPLAELFKDEVRELGASMG 374

Query: 186 ISW 188
           I  
Sbjct: 375 IPH 377


>gi|125624516|ref|YP_001032999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493324|emb|CAL98297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071310|gb|ADJ60710.1| tRNA-specific 2-thiouridylase MnmA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 384

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 18  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 69

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ + +  V+++            A  R  R             +    ++A  +
Sbjct: 70  AAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMEL 129

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P     
Sbjct: 130 GADYVATGHYAQVRTDEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMF----PLGHLE 185

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 186 KPEVRRIAEKAGLA 199


>gi|116511650|ref|YP_808866.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107304|gb|ABJ72444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 384

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 18  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 69

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ + +  V+++            A  R  R             +    ++A  +
Sbjct: 70  AAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMEL 129

Query: 118 NATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      D+  TV  +R   +  ++   LS +    L         P     
Sbjct: 130 GADYVATGHYAQVRTDEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMF----PLGHLE 185

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 186 KPEVRRIAEKAGLA 199


>gi|260906013|ref|ZP_05914335.1| GMP synthase [Brevibacterium linens BL2]
          Length = 526

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 37/197 (18%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V    ++ A+SGG DS      +H  + D      + + + VDH  LRE  +++V
Sbjct: 214 LIRDRVGSKKVICALSGGVDSSVAAALVHKAIGD------QLTCVFVDHGLLRENEREQV 267

Query: 71  RYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
               D    + +    +  +          + P+T      RE          ++ +A L
Sbjct: 268 EN--DYVDSIGVRLVTIDARERFLSELAGVTDPETKRKIIGRE-----FIRTFESASADL 320

Query: 122 IMTAHTFDDQLE--------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFL 170
           +  A    D+ E        T+Y          G            +  D+   +  P  
Sbjct: 321 VAEA---KDEGEEIGFLVQGTLYPDVVESGGGSGTANIKSHHNVGGLPDDITFELIEPLR 377

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 378 ALFKDEVRAIGRELGVP 394


>gi|294677395|ref|YP_003578010.1| GMP synthase [Rhodobacter capsulatus SB 1003]
 gi|294476215|gb|ADE85603.1| GMP synthase-1 (glutamine-hydrolyzing) [Rhodobacter capsulatus SB
           1003]
          Length = 518

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH L R    DEV 
Sbjct: 214 IRAQVGDKRVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLMRLNEADEV- 266

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKT-----INATLI 122
            VS       I          +  +          R+    L  +  +        A  +
Sbjct: 267 -VSMFRDNYNIPLIHADEADLFIGALEGVSDPEVKRKTIGKLFIDVFQREANKIEGAEFL 325

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 326 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGR 382

Query: 183 QRNIS 187
           +  + 
Sbjct: 383 ELGLP 387


>gi|163741128|ref|ZP_02148520.1| GMP synthase [Phaeobacter gallaeciensis 2.10]
 gi|161385481|gb|EDQ09858.1| GMP synthase [Phaeobacter gallaeciensis 2.10]
          Length = 522

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 21/191 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++  +SGG DS    I +H  + D      + + + VDH L R+ 
Sbjct: 212 EQAIQAIRDQVGDKQVICGLSGGVDSSVAAILIHEAIGD------QLTCVFVDHGLLRKN 265

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI---- 117
             +EV  V+       I       +                R+    L  +  +      
Sbjct: 266 EAEEV--VTMFRDNYNIQLIHADEQELFLGELDGQSDPETKRKIIGKLFIDVFQKHANTI 323

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 324 EGAEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 380

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 381 VRALGRELGLP 391


>gi|313123455|ref|YP_004033714.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280018|gb|ADQ60737.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 375

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++       +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTNDDGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++    +           A R          E ++    E+A  ++
Sbjct: 61  KVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALALD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  +   H      D+   T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYLAMGHYAKTMVDENGVTHMMRPKDGNKDQTYFLSQLTQEQIKR----VMFPLQDLTK 176

Query: 175 EDIRSFLLQRNI 186
            ++R    +  +
Sbjct: 177 PEVRRIAEEAGL 188


>gi|332654273|ref|ZP_08420017.1| GMP synthase [Ruminococcaceae bacterium D16]
 gi|332517359|gb|EGJ46964.1| GMP synthase [Ruminococcaceae bacterium D16]
          Length = 513

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 57/185 (30%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           VR  V    +L+A+SGG DS  +   L   +        + + + VDH L R    DE  
Sbjct: 212 VREKVGSGKVLLALSGGVDSSVVAALLAEAV------GSQLTCVFVDHGLMRLNEGDE-- 263

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V    S+  I    V  +          S P++       E       E  K      +
Sbjct: 264 -VEQAFSKWDINFVRVDAEQRFLGKLAGISDPESKRKIIGEEFIRVFEEEAKKIGKVDFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+         A        +     Y     I  P     ++++R    
Sbjct: 323 AQGTIYPDVIES-----GAGDAAVIKSHHNVGGLPDYVDFQEIIEPLRMLFKDEVRQLGR 377

Query: 183 QRNIS 187
           +  + 
Sbjct: 378 ELGLP 382


>gi|84501069|ref|ZP_00999304.1| GMP synthase [Oceanicola batsensis HTCC2597]
 gi|84391136|gb|EAQ03554.1| GMP synthase [Oceanicola batsensis HTCC2597]
          Length = 523

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++ A+SGG DS      LH  + +        + + VDH  LR    +EV 
Sbjct: 219 IRDQVGDAKVICALSGGVDSSVAAALLHEAIGE------NLTCVFVDHGLLRLNEAEEVV 272

Query: 72  ------------YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
                       +  +    L     V     S P+T      R           +   A
Sbjct: 273 GMFRDHMNLSVIHAQEQELFLGALEGV-----SDPETKRKTIGRLFIDVFQKYADQIEGA 327

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V   S        +        +   + L +  P     ++++R+
Sbjct: 328 RFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRT 384

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 385 LGRELGLP 392


>gi|15672819|ref|NP_266993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. lactis Il1403]
 gi|12723762|gb|AAK04935.1|AE006317_4 tRNA-methyltransferase [Lactococcus lactis subsp. lactis Il1403]
 gi|326406382|gb|ADZ63453.1| 5-methylaminomethyl-2-thiouridylate-tRNA methyltransferase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 384

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 18  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 69

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ + +  V+++            A  R  R             +    ++A  +
Sbjct: 70  AAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMEL 129

Query: 118 NATLIMTAHTFDDQL---ETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H    Q+   E   +   R      ++   LS +    L         P   
Sbjct: 130 GADYVATGHYA--QVRTDENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMF----PLGH 183

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  ++
Sbjct: 184 LEKPEVRKIAEKAGLA 199


>gi|281491325|ref|YP_003353305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. lactis KF147]
 gi|14195271|sp|Q9CHA1|MNMA_LACLA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|281375066|gb|ADA64584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 376

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 10  RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 61

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ + +  V+++            A  R  R             +    ++A  +
Sbjct: 62  AAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMEL 121

Query: 118 NATLIMTAHTFDDQL---ETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H    Q+   E   +   R      ++   LS +    L         P   
Sbjct: 122 GADYVATGHYA--QVRTDENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMF----PLGH 175

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  ++
Sbjct: 176 LEKPEVRKIAEKAGLA 191


>gi|310829791|ref|YP_003962148.1| GMP synthase [Eubacterium limosum KIST612]
 gi|308741525|gb|ADO39185.1| GMP synthase [Eubacterium limosum KIST612]
          Length = 435

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 24/186 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            ++  V    +L+A+SGG DS  +   L   +        +   + V+H L R+   + V
Sbjct: 133 LIKRQVGDRKVLLALSGGVDSSVVAALLIKAIGK------QLVCVHVNHGLMRKGESESV 186

Query: 71  RYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
             V    ++L      V             + P+        E       E  K      
Sbjct: 187 VEVFK--NQLDANLVYVDATERFLTKLAGVADPEEKRKIIGAEFIRVFEEEARKLEGIDF 244

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            K +        +  DL   +  P  +  ++++R+  
Sbjct: 245 LGQGTIYPDIVE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPVRQLFKDEVRACG 298

Query: 182 LQRNIS 187
            +  + 
Sbjct: 299 TELGLP 304


>gi|297528666|ref|YP_003669941.1| GMP synthase, large subunit [Geobacillus sp. C56-T3]
 gi|297251918|gb|ADI25364.1| GMP synthase, large subunit [Geobacillus sp. C56-T3]
          Length = 510

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E VR  +R  V    +L A+SGG DS    + +H  + D      + + I VDH  LR+ 
Sbjct: 204 EQVRR-IREQVGGKKVLCALSGGVDSSVAAVLVHRAIGD------QLTCIFVDHGLLRKG 256

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAK 115
              E   V      + ++    V  K+           P+        E  Y    E AK
Sbjct: 257 ---EAESVMKTFREQFQMNVIKVDAKDRFLAKLKGVTDPEQKRKIIGNEFIYVFDDEAAK 313

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 ++    + D +E            + +        +  D+   +  P     ++
Sbjct: 314 FEGIEFLVQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMKFELIEPLNTLFKD 367

Query: 176 DIRSFLLQRNIS 187
           ++R+   Q  I 
Sbjct: 368 EVRALGTQLGIP 379


>gi|269217070|ref|ZP_06160924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia exigua ATCC 700122]
 gi|269129207|gb|EEZ60292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Slackia exigua ATCC 700122]
          Length = 362

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 61/199 (30%), Gaps = 44/199 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--L--RET---------A 66
             ++V +SGG DS      L     +     ++       H   L  R+          +
Sbjct: 3   KRVMVGMSGGVDSSVTAYVLKQQGYEVIGATMRL------HGSDLPGRDARSCASRTCCS 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR--------EARYALISE 112
            D+V     V  RL IAH  + + +       KP       AR          R    S 
Sbjct: 57  LDDVEDAKSVARRLGIAHRTIDFTDRFEDAVIKPFVRAYETARTPNPCIDCNRRLKFGSM 116

Query: 113 H--AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----IS 166
              A  +    + T H        +  R  R    +G   S     +LY L  +      
Sbjct: 117 LERALDLGCDYVATGHYAQ-----IVRRGDRFALVRGADASKDQSYVLYSLTQYQLAHTL 171

Query: 167 RPFLRCRREDIRSFLLQRN 185
            P    R+ ++R+   ++ 
Sbjct: 172 LPLGGMRKSEVRAIAAEQG 190


>gi|293396528|ref|ZP_06640804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia odorifera DSM 4582]
 gi|291420792|gb|EFE94045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia odorifera DSM 4582]
          Length = 370

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 35/133 (26%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNW----------EEDDDEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADFIATGH 129


>gi|260892778|ref|YP_003238875.1| GMP synthase, large subunit [Ammonifex degensii KC4]
 gi|260864919|gb|ACX52025.1| GMP synthase, large subunit [Ammonifex degensii KC4]
          Length = 510

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 29/196 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I S    +RS V     L A+SGG DS    + +H  + +R       + + V+H  L
Sbjct: 201 SFIASAIEEIRSQVGEERALAALSGGVDSTVAAVLVHRAIGNR------LTCVFVNHGLL 254

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHA 114
           R+    E   V      L +    V          +         R   +       E A
Sbjct: 255 RKG---EAESVRAAVQALGVPLVYVDASARFLAQLEGVVDPEEKRRRVGHEFIRVFEEEA 311

Query: 115 KTINATLIMTAHTF-DDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + +     +   T   D +E  T      + +   G     M   +L  L          
Sbjct: 312 RKLGKVRFLVQGTLYPDVIESGTALSHRIKSHHNVGGLPEEMELELLEPLRYLF------ 365

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +  + 
Sbjct: 366 --KDEVRELGKELGLP 379


>gi|119899062|ref|YP_934275.1| tRNA-specific 2-thiouridylase MnmA [Azoarcus sp. BH72]
 gi|205812510|sp|A1K983|MNMA_AZOSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119671475|emb|CAL95388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Azoarcus sp. BH72]
          Length = 365

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 60/207 (28%), Gaps = 48/207 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS    + L     + +   +K               D+  Y        
Sbjct: 2   KVVVGMSGGVDSSVTALLLKQQGYEVTGLFMKNW----------EDDDDDEYCSTRQDLV 51

Query: 74  --SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
             + VC  + I   VV++                 A R          E ++    +HA 
Sbjct: 52  DVASVCDVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDILCNSEIKFRCFLDHAM 111

Query: 116 TINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + A  I T H         D + E   ++++    ++   L  +    L         P
Sbjct: 112 QLGAERIATGHYAQVREWINDGRSEFQLLKAEDGTKDQSYFLYRLNQAQLAKT----LFP 167

Query: 169 FLRCRREDIRSFLLQRNISWCE--DPS 193
                + ++R       +      D +
Sbjct: 168 LGGLYKREVRKIAEAAGLHVATKKDST 194


>gi|219669597|ref|YP_002460032.1| tRNA-specific 2-thiouridylase MnmA [Desulfitobacterium hafniense
           DCB-2]
 gi|219539857|gb|ACL21596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfitobacterium hafniense DCB-2]
          Length = 370

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 55/207 (26%), Gaps = 54/207 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETA 66
           L     ++V +SGG DS      L           + +  S G               TA
Sbjct: 3   LTEKKKVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPSGGPDDVGGCC-----SITA 57

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALI 110
            D+ R V     +L I H V++++                S           R  R+   
Sbjct: 58  IDDARRV---AHQLGIPHYVLNFRTIFEENVIDYFTNAYLSGETPNPCTMCNRVVRWGEF 114

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--- 167
              A+ + A  + T H                  + G  L         D    +     
Sbjct: 115 LRKARALGADYLATGH----------YAKILQDPDSGRYLMSRPVDTWKDQTYMLYNLTQ 164

Query: 168 --------PFLRCRREDIRSFLLQRNI 186
                   P    ++E IR    +R +
Sbjct: 165 DQLKHTLFPLADYKKEHIREMAAERGL 191


>gi|228475220|ref|ZP_04059946.1| tRNA-methyltransferase [Staphylococcus hominis SK119]
 gi|228270831|gb|EEK12233.1| tRNA-methyltransferase [Staphylococcus hominis SK119]
          Length = 370

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDSHVE--MLRGIDNNKDQTYFLNQLSQKQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +++++
Sbjct: 173 LEKKEVRKIAEEQDLA 188


>gi|56475956|ref|YP_157545.1| tRNA-specific 2-thiouridylase MnmA [Aromatoleum aromaticum EbN1]
 gi|81598997|sp|Q5P7R7|MNMA_AZOSE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56311999|emb|CAI06644.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein
           [Aromatoleum aromaticum EbN1]
          Length = 374

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 62/207 (29%), Gaps = 48/207 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS    + L     D +   +K               D+  Y        
Sbjct: 11  KVVVGMSGGVDSSVTALLLKQQGFDVTGLFMKNW----------EDDDDDEYCSTRQDLV 60

Query: 74  --SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
             + VC  + I   VV++                 A R          E ++    +HA 
Sbjct: 61  DVASVCDVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDVLCNSEIKFRCFLDHAM 120

Query: 116 TINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + A  I T H         D + E   ++++    ++   L  +    L         P
Sbjct: 121 ALGADRIATGHYAQVREWANDGRSEYQLLKAEDGTKDQSYFLYRLNQAQLAKT----LFP 176

Query: 169 FLRCRREDIRSFLLQRNISWCE--DPS 193
                + D+R    +  +   E  D +
Sbjct: 177 LGALYKRDVRRIAAEAGLHVAEKKDST 203


>gi|85702789|ref|ZP_01033893.1| GMP synthase [Roseovarius sp. 217]
 gi|85671717|gb|EAQ26574.1| GMP synthase [Roseovarius sp. 217]
          Length = 523

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR     +V 
Sbjct: 219 IRAQVGDKQVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLNEAQDV- 271

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V+       I        +         S P+T      R           +   A  +
Sbjct: 272 -VTMFRDNYNIPLIHADESDLFLGELDGVSDPETKRKIIGRLFIDVFQKHANEIEGAEFL 330

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 331 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGR 387

Query: 183 QRNIS 187
           +  + 
Sbjct: 388 ELGLP 392


>gi|307294927|ref|ZP_07574769.1| GMP synthase, large subunit [Sphingobium chlorophenolicum L-1]
 gi|306879401|gb|EFN10619.1| GMP synthase, large subunit [Sphingobium chlorophenolicum L-1]
          Length = 519

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH L R     E  
Sbjct: 215 IRAQVGEGRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRLG---EAE 265

Query: 72  YVSDVCSRL-RIAHSVVSWKNS--KPQTGLMAAAREARY------ALISEHAKTI-NATL 121
            V  +      I    V+ +        GL    ++ ++      AL  E AK I  A  
Sbjct: 266 QVVSLFREHYGIKLVHVNAEERFLGGLAGLTDPEKKRKFIGGEFIALFEEEAKKIGGADF 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 326 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRVLG 382

Query: 182 LQRNIS 187
            +  + 
Sbjct: 383 RELGLP 388


>gi|114797176|ref|YP_760512.1| GMP synthase [Hyphomonas neptunium ATCC 15444]
 gi|114737350|gb|ABI75475.1| GMP synthase [Hyphomonas neptunium ATCC 15444]
          Length = 526

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH L R     E  
Sbjct: 222 IRNQVGKGRVICGLSGGVDSSVAAVLIHEAIGD------QLTCVYVDHGLMRAG---ESE 272

Query: 72  YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V  +      I    V                E +  +I         +E  K   A  
Sbjct: 273 QVVSLFREHYNIPLVHVDASELFLGQLDGVTDPEKKRKIIGGLFIDVFDAEANKIGGADF 332

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + + +  P     ++++R+  
Sbjct: 333 LAQGTLYPDVIESV---SAIGGPSVTIKSHHNVGGLPARMKMKLVEPLRELFKDEVRALG 389

Query: 182 LQRNIS 187
            +  + 
Sbjct: 390 RELGLP 395


>gi|83593359|ref|YP_427111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum rubrum ATCC 11170]
 gi|123526416|sp|Q2RSS1|MNMA_RHORT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83576273|gb|ABC22824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 377

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 65/206 (31%), Gaps = 31/206 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRETAK-----DEVR 71
              ++VA+SGG DS      L     D     ++      DH   L   A+      ++ 
Sbjct: 12  GGRVVVAMSGGVDSSVTAALLKEQGHDVVGLTMRLY----DHGKPLGPGARTCCAGQDIH 67

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAK 115
               V  RL IAH V+ +++   +  +   A                   ++  +   A 
Sbjct: 68  DARRVADRLGIAHYVLDYESRFREDVIEPFAASYGRGETPIPCVLCNQTVKFRDLLAAAL 127

Query: 116 TINATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +  T + T H     D  E    R  R           +  T    L   +        
Sbjct: 128 DLGGTALATGHYVRRLDGPEGP--RLYRAVDPGRDQSYFLFATTKGQLGRLLFPLGAMAS 185

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRF 199
           +++ R+   +  ++  + P + D  F
Sbjct: 186 KDETRAIARRLGLAVGDKPDSQDICF 211


>gi|15790733|ref|NP_280557.1| GMP synthase subunit B [Halobacterium sp. NRC-1]
 gi|169236476|ref|YP_001689676.1| GMP synthase subunit B [Halobacterium salinarum R1]
 gi|13626903|sp|Q9HP33|GUAAB_HALSA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|226738370|sp|B0R6G1|GUAAB_HALS3 RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|10581275|gb|AAG20037.1| GMP synthase subunit B [Halobacterium sp. NRC-1]
 gi|167727542|emb|CAP14330.1| GMP synthase (glutamine-hydrolyzing) subunit B [Halobacterium
           salinarum R1]
          Length = 305

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 70/190 (36%), Gaps = 22/190 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S +E  R  +   +     ++A+SGG DS       +  + D      +   + VD  L 
Sbjct: 6   SFVEDARAEISEALGDETAIIALSGGVDSSTAAALAYEAVGD------QLVPVYVDTGLM 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTI 117
           R+   DE+R V D    LR+  +   + +       P+    A   +         A+ +
Sbjct: 60  RKGETDEIREVFDYMDSLRVVDASDRFFDELAGVTDPEEKRHAIGEQFIRE-FETVAEEV 118

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +AT ++    + D++E           +    + G+ + + ++    I  P     ++++
Sbjct: 119 DATQLVQGTIYPDRIE------SEGTIKSHHNVGGLPERVGFEG---IVEPMRDLYKDEV 169

Query: 178 RSFLLQRNIS 187
           R       + 
Sbjct: 170 REVARHLGLE 179


>gi|315923795|ref|ZP_07920025.1| GMP synthase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622915|gb|EFV02866.1| GMP synthase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 529

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  +    +L+ +SGG DS    + L   +        + + + VDH L R+   DEV
Sbjct: 215 ALREKIGSDRVLLGLSGGVDSTVAAVLLSRAVGK------QLTCVFVDHGLMRKNEGDEV 268

Query: 71  RYV 73
             V
Sbjct: 269 EAV 271


>gi|192290882|ref|YP_001991487.1| GMP synthase [Rhodopseudomonas palustris TIE-1]
 gi|192284631|gb|ACF01012.1| GMP synthase, large subunit [Rhodopseudomonas palustris TIE-1]
          Length = 565

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 64/197 (32%), Gaps = 45/197 (22%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR   KDE +
Sbjct: 261 IRAQVGSGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLLR---KDEGK 311

Query: 72  YVSDVCSRL-RIAHSVVSW--------------KNSKPQTG------LMAAAREARYALI 110
            V D+      I    V                +  +   G        A AR       
Sbjct: 312 SVVDLFRHHYNIPLVHVDVSETFLGALKGVTDPEQKRKTIGKLFIDVFEAEARRV----- 366

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                   A  +     + D +E+V   S        +        +   +N+ +  P  
Sbjct: 367 ------GGADFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLR 417

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 418 ELFKDEVRALGRELGLP 434


>gi|33866156|ref|NP_897715.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. WH 8102]
 gi|81572928|sp|Q7TTU4|MNMA_SYNPX RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33639131|emb|CAE08137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 8102]
          Length = 396

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 57/205 (27%), Gaps = 37/205 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLR 63
           ++    +R+      + V +SGG DS      L     +     +             L 
Sbjct: 17  DAALQRLRTWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSGKGACCAEGLV 76

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------------- 109
           + A         +C +L I H VV  +++  +  +       R  +              
Sbjct: 77  DAAG--------ICEQLGIPHHVVDTRDTFQREIVQRLVDGYREGITPLPCSQCNRSVKF 128

Query: 110 ---ISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
              +   A+      I T H        +Q     +R      ++   L  +   +L   
Sbjct: 129 GPMLDWAAEERGLPRIATGHYARIRHGGEQGRHQLLRGLDSRKDQSYFLYDLPQEVL--- 185

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI 186
              I  P     + D R    +  +
Sbjct: 186 -GRIVFPLGELTKADTRGEAARHGL 209


>gi|255020959|ref|ZP_05293015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969750|gb|EET27256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 348

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 42/194 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----DEVRYVSD 75
           A I+VA+SGG DS           +  +        +++   L   ++     ++   +D
Sbjct: 2   ARIVVALSGGVDS-------AVAAALLADAGHDLVGVTL--RLWPQSRCCDERDIEDAAD 52

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLM------AAARE----AR------YALISEHAKTINA 119
           +C++L I + V+ ++    +  +        A R     AR      +  + + +  + A
Sbjct: 53  LCAQLGIPYRVLDYRQRFREAIVEPFVADYLAGRTPNPCARCNQLLKFTALWQESAALGA 112

Query: 120 TLIMTAHTF------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
             + T H        DD       R+  +  ++   L  +   +L  L      P    R
Sbjct: 113 DFLATGHYVRLREVGDD---WQLRRAVDERKDQSYFLFAVPGELLPRLRF----PLGEWR 165

Query: 174 REDIRSFLLQRNIS 187
           +E++R++  QR ++
Sbjct: 166 KEEVRTWARQRGLA 179


>gi|170722583|ref|YP_001750271.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida W619]
 gi|205816891|sp|B1JBJ1|MNMA_PSEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169760586|gb|ACA73902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida W619]
          Length = 374

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
                ++V +SGG DS    LL+       +  F K             E        A+
Sbjct: 9   PAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMK----------NWEEDDGTEYCTAR 58

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
           +++     VC R+ I     +     W N          A           RE ++    
Sbjct: 59  EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFL 118

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           ++A ++ A LI T H     D    T  ++      ++   L  +    +         P
Sbjct: 119 DYALSLGADLIATGHYVRRRDTGAVTELLKGLDPNKDQSYFLHAVGGKEIART----LFP 174

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 175 VGELEKPEVRAIAEKHGLA 193


>gi|118586895|ref|ZP_01544328.1| GMP synthase [Oenococcus oeni ATCC BAA-1163]
 gi|118432622|gb|EAV39355.1| GMP synthase [Oenococcus oeni ATCC BAA-1163]
          Length = 531

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+ +SGG DS  + + LH  +        + + I VDH  LR+    E +
Sbjct: 230 IRTEVGNKKVLLGLSGGVDSSVVAVLLHKAIGR------QLTCIFVDHGLLRKN---EAK 280

Query: 72  YV-SDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREAR----YALISEHAKTI-NATL 121
            V   +  +  +    V     + +           R+          ++ AK +     
Sbjct: 281 LVMESLAGKFGLNIIKVDAQKRFLDKLEGISEPEQKRKIIGKEFIETFNDEAKKLDGIDF 340

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  +++  +  P     +++ R   
Sbjct: 341 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKEMHFKLIEPLRTLFKDEARKLG 394

Query: 182 LQRNISW 188
            +  +  
Sbjct: 395 EEMQMPH 401


>gi|116491142|ref|YP_810686.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oenococcus oeni PSU-1]
 gi|290890653|ref|ZP_06553723.1| hypothetical protein AWRIB429_1113 [Oenococcus oeni AWRIB429]
 gi|116091867|gb|ABJ57021.1| GMP synthase (glutamine-hydrolyzing) [Oenococcus oeni PSU-1]
 gi|290479628|gb|EFD88282.1| hypothetical protein AWRIB429_1113 [Oenococcus oeni AWRIB429]
          Length = 517

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+ +SGG DS  + + LH  +        + + I VDH  LR+    E +
Sbjct: 216 IRTEVGNKKVLLGLSGGVDSSVVAVLLHKAIGR------QLTCIFVDHGLLRKN---EAK 266

Query: 72  YV-SDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREAR----YALISEHAKTI-NATL 121
            V   +  +  +    V     + +           R+          ++ AK +     
Sbjct: 267 LVMESLAGKFGLNIIKVDAQKRFLDKLEGISEPEQKRKIIGKEFIETFNDEAKKLDGIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  +++  +  P     +++ R   
Sbjct: 327 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPKEMHFKLIEPLRTLFKDEARKLG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EEMQMPH 387


>gi|254487519|ref|ZP_05100724.1| GMP synthase (glutamine-hydrolyzing) [Roseobacter sp. GAI101]
 gi|214044388|gb|EEB85026.1| GMP synthase (glutamine-hydrolyzing) [Roseobacter sp. GAI101]
          Length = 520

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V  A ++  +SGG DS    + +H  + D      + + + VDH  LR+   +EV 
Sbjct: 216 IRAQVGDAKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRKGEAEEV- 268

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V+       +       ++         S P+T      R              +A  +
Sbjct: 269 -VTMFRDNYNMPLIHADEQDLFLGELDGVSDPETKRKIIGRLFIDVFQKHATAVGDAKFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 328 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGR 384

Query: 183 QRNIS 187
           +  + 
Sbjct: 385 ELGLP 389


>gi|296535629|ref|ZP_06897808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseomonas cervicalis ATCC 49957]
 gi|296264053|gb|EFH10499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseomonas cervicalis ATCC 49957]
          Length = 368

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 52/214 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDEVRY 72
            I+VA+SGG DS  +   L     +     ++      DH             A  ++  
Sbjct: 2   RIVVAMSGGVDSSVVAGLLKEQGHEVIGATLQLY----DHG--AAIEKKGACCAGQDIHD 55

Query: 73  VSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAKT 116
             DV  RL I H V+     ++++  +    A AR              ++  + E A+ 
Sbjct: 56  ARDVADRLGIPHYVLDRERRFRDAVIEDFAEAYARGETPIPCVRCNQTVKFQDLVELARD 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---------DLNLWISR 167
           + A  + T H             +R   E G  L    D                L   R
Sbjct: 116 LGADALATGH-----------YVRRTEGEAGAELRRAADPARDQSYFLFATTRAQLEFCR 164

Query: 168 -PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
            P      + ++R+  L+  ++  E P + D  F
Sbjct: 165 FPLGDYTSKAEVRAEALRLGLAVAEKPDSQDICF 198


>gi|299822830|ref|ZP_07054716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria grayi DSM 20601]
 gi|299816359|gb|EFI83597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria grayi DSM 20601]
          Length = 370

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 63/193 (32%), Gaps = 38/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 8   RVVVGMSGGVDSSVTAYLLKQQGYDVVGIFMKNWDDTDEFGVCT--------ATEDYEDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 60  IRVANQIGIPYYAVNFEKQYWDKVFTYFLAEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 119

Query: 118 NATLIMTAHTFDDQL---ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H    ++   E   +R   +  ++   L+ +    L      +  P     +
Sbjct: 120 GADYVATGHYARTEIVDGEVQLLRGVDNNKDQTYFLNQLSQEQLSK----VMFPLGGMEK 175

Query: 175 EDIRSFLLQRNIS 187
            ++R    +  ++
Sbjct: 176 SEVRDIAQKAGLA 188


>gi|225163500|ref|ZP_03725813.1| GMP synthase, large subunit [Opitutaceae bacterium TAV2]
 gi|224801876|gb|EEG20159.1| GMP synthase, large subunit [Opitutaceae bacterium TAV2]
          Length = 521

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 68/189 (35%), Gaps = 26/189 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V  + +L+A+SGG DS      LH  +        + + + VD  L R   KDE +
Sbjct: 214 IRAQVGKSRVLLALSGGVDSSVCAALLHKAIGK------QLTCVYVDTGLMR---KDETK 264

Query: 72  YVSDV-CSRLRIAHSVVSWKNS--KPQTGLMAAAREAR---YALIS-------EHAKTIN 118
           ++  +     +I   +V    +  K   G+    R+ +    A I        E      
Sbjct: 265 HIEALYAKHFKIDLRIVDASRTFLKRLKGITDPERKRKIIGAAFIEVFEKKVRELKHKEG 324

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E++   +  +     +        +   +   +  P  +  ++++R
Sbjct: 325 IEYLGQGTIYPDVIESM---AIGNNPAAMIKSHHNVGGLPERMKFKLVEPLRQLFKDEVR 381

Query: 179 SFLLQRNIS 187
               +  + 
Sbjct: 382 LVGTKLGLP 390


>gi|163736337|ref|ZP_02143756.1| GMP synthase [Phaeobacter gallaeciensis BS107]
 gi|161390207|gb|EDQ14557.1| GMP synthase [Phaeobacter gallaeciensis BS107]
          Length = 522

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 21/191 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++  +SGG DS    I +H  + D      + + + VDH L R+ 
Sbjct: 212 EQAIQAIRDQVGDKQVICGLSGGVDSSVAAILIHEAIGD------QLTCVFVDHGLLRKN 265

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI---- 117
             +EV  V+       I       +                R+    L  +  +      
Sbjct: 266 EAEEV--VTMFRDNYNIQLIHADEQELFLGELDGQSDPETKRKIIGKLFIDVFQKHANTI 323

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 324 EGAEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 380

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 381 VRALGRELGLP 391


>gi|224368901|ref|YP_002603063.1| ATP-utilizing protein of the PP-loop superfamily [Desulfobacterium
           autotrophicum HRM2]
 gi|223691618|gb|ACN14901.1| ATP-utilizing protein of the PP-loop superfamily [Desulfobacterium
           autotrophicum HRM2]
          Length = 276

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 39/195 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-T 65
           + ++  V SL     I +A SGG DS  L                   AI+V        
Sbjct: 3   DKLKNLVHSLKAYGKIAIAFSGGVDSAFLAAVAKDTCGSS-------VAITV---KSAFQ 52

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINA 119
           +  E      +   + I H VV           K  +      ++  ++L+++ A  +  
Sbjct: 53  SGQEAYNAVCMAEAIGIRHVVVQADVLGNSRIVKNTSERCYFCKKMIFSLLTDRADELGL 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDI 177
             I+     DD                   L+     +     + +  P L     + +I
Sbjct: 113 KTIVHGANVDD-------------------LADYRPGLRAAREMGVIAPLLDAGLTKNEI 153

Query: 178 RSFLLQRNI-SWCED 191
           R    +  + +W  D
Sbjct: 154 RDLSRRAGLKTWNMD 168


>gi|166031729|ref|ZP_02234558.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC
           27755]
 gi|166028182|gb|EDR46939.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC
           27755]
          Length = 359

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 61/202 (30%), Gaps = 48/202 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETA 66
              ++V +SGG DS      L                 +  F + +         L   A
Sbjct: 3   KKKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDEFKQQEEGGCC---GLS--A 57

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALI 110
            ++ R V    +RL I + V+++KN   +                    A  R  ++  +
Sbjct: 58  VEDARRV---AARLGIPYYVMNFKNEFKKYVIDYFIDDYLHGRTPNPCIACNRYVKWESL 114

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD------TILYDLNLW 164
              A  I A  I T H    Q+E    +           ++ M D       +  D    
Sbjct: 115 LTRAMEIGADYIATGHYA--QVE----QLPSGRYSIKTSVTSMKDQTYALYNLTQDQLSK 168

Query: 165 ISRPFLRCRREDIRSFLLQRNI 186
              P  +  ++++R       +
Sbjct: 169 TLMPVGKYSKDEVRKMAENIGL 190


>gi|220929349|ref|YP_002506258.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulolyticum H10]
 gi|219999677|gb|ACL76278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cellulolyticum H10]
          Length = 359

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 53/205 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--------------- 64
             +++ +SGG DS      L     +     ++          ++               
Sbjct: 4   KKVMLGMSGGVDSSVAAAILLRQGYEVIGVTLQI--------WQDMDEERRKSEGGCCSL 55

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYA 108
           +A D+ R V++   +L I + V+++K+   +T +                 A  R  ++ 
Sbjct: 56  SAVDDARRVAN---KLGIPYYVLNFKDIFSKTVIEYFKEEYFKGRTPNPCIACNRHVKWQ 112

Query: 109 LISEHAKTINATLIMTAHTF---DDQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLN 162
            + + A ++    I T H      D  ET   +  +S  D  ++   L  +    L    
Sbjct: 113 AMLDKALSMGIDYIATGHYAKVIQD-AETGRFILKKSVTDKKDQTYALYNLTQQQLSHTL 171

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
           +    P     +++IR    +  +S
Sbjct: 172 M----PVGDYTKDEIREIAKEIGLS 192


>gi|89898460|ref|YP_515570.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila felis Fe/C-56]
 gi|123483134|sp|Q253W3|MNMA_CHLFF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89331832|dbj|BAE81425.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 361

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 39/193 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-------KDEVRYVS 74
           ++VA+SGG DS  +   L +  S +  G              E           +   V 
Sbjct: 5   VVVAMSGGVDSSVVAYLLKNYTSYKVLGLFMK-------NWEEEDGEGLCSTAKDYEDVE 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAKTIN 118
            V  +L I +  VS+     +       TG              RE ++ L+ +  + + 
Sbjct: 58  KVAGQLDIPYYTVSFAKEYRERVFSRFLTGYSEGYTPNPDVLCNREIKFDLLQKKVRELG 117

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              + T H      D+      +   R    +      +C T   +    +  P     +
Sbjct: 118 GDFLATGHYCRVSPDENG----VNLLRGIDPQKDQSYFLCGTR-KESLENVIFPLGDKTK 172

Query: 175 EDIRSFLLQRNIS 187
            ++RS   Q  ++
Sbjct: 173 TEVRSIAAQAGLA 185


>gi|16803552|ref|NP_465037.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes EGD-e]
 gi|47097209|ref|ZP_00234773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|224500677|ref|ZP_03669026.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes Finland
           1988]
 gi|224501548|ref|ZP_03669855.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           R2-561]
 gi|254828254|ref|ZP_05232941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N3-165]
 gi|254898322|ref|ZP_05258246.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J0161]
 gi|254912186|ref|ZP_05262198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes J2818]
 gi|254936514|ref|ZP_05268211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes F6900]
 gi|284801902|ref|YP_003413767.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
 gi|284995044|ref|YP_003416812.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
 gi|24638317|sp|Q8Y714|MNMA_LISMO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|16410941|emb|CAC99590.1| lmo1512 [Listeria monocytogenes EGD-e]
 gi|47014423|gb|EAL05392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258600642|gb|EEW13967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes FSL N3-165]
 gi|258609108|gb|EEW21716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes F6900]
 gi|284057464|gb|ADB68405.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578]
 gi|284060511|gb|ADB71450.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923]
 gi|293590159|gb|EFF98493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes J2818]
          Length = 371

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGAM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIAKKAGLA 189


>gi|323703202|ref|ZP_08114855.1| GMP synthase, large subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531861|gb|EGB21747.1| GMP synthase, large subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 513

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 28/196 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     ++  V   H+L A+SGG DS    + +H  + D      K + + VDH  L
Sbjct: 203 SFLEEAIADIKRQVGDRHVLCALSGGVDSSVAAVLVHRAVGD------KLTCVFVDHGLL 256

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V      L  I    V             + P+        E       E
Sbjct: 257 RKN---EAAQVVHTFRNLFNIKLVHVDASERFLGKLKGVTDPEEKRKIIGAEFIRVFEEE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLR 171
             K  +   ++    + D +E+              +        +  D+   +  P   
Sbjct: 314 ARKLGDIDFLVQGTLYPDVVES-------GTGTAAVIKSHHNVGGLPEDMKFELVEPLRW 366

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    Q  + 
Sbjct: 367 LFKDEVRRLGEQLGLP 382


>gi|21227622|ref|NP_633544.1| hypothetical protein MM_1520 [Methanosarcina mazei Go1]
 gi|20906010|gb|AAM31216.1| conserved protein [Methanosarcina mazei Go1]
          Length = 275

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 47/201 (23%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59
           M ++ IE +R  +++       ++A SGG DS  L       L DR+       A+++D 
Sbjct: 1   MDIARIEKIREAIKARESA---VIAFSGGVDSTTLAALAFEELGDRAL------AVTIDS 51

Query: 60  -----HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYA 108
                H L           S     + I H ++ +  +                ++A   
Sbjct: 52  PLFPRHQL--------ETASQAACEIGIQHKILPFSLNSVPYFTANTINRCYFCKKALLE 103

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + E A+      ++                      KG    G     + +    I  P
Sbjct: 104 TLLEFAEKTGYNAVLEGTNA--------------SEIKGENRPGY--RAIQEAGEKIYSP 147

Query: 169 FL--RCRREDIRSFLLQRNIS 187
           F+     +E+IR      ++S
Sbjct: 148 FVEFNVTKEEIREIAANLSLS 168


>gi|326386574|ref|ZP_08208196.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208889|gb|EGD59684.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 519

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V  A ++  +SGG DS    + +H  + D      + + + VDH L R     E  
Sbjct: 215 IREQVGDARVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLMRLG---EAE 265

Query: 72  YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V  +      I            +        EA+   I          E  +   A  
Sbjct: 266 QVVGLFRNHYNIPLVHRDASTLFLKGLEGVTDPEAKRKFIGKTFIDVFEEEARQVGGADF 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 326 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRELG 382

Query: 182 LQRNIS 187
            +  + 
Sbjct: 383 RELGLP 388


>gi|268679904|ref|YP_003304335.1| Queuosine synthesis-like protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617935|gb|ACZ12300.1| Queuosine synthesis-like protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 261

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/199 (21%), Positives = 65/199 (32%), Gaps = 37/199 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF    E      R L     ++VA SGG DS  LL   + VL + +   I      +  
Sbjct: 1   MF----EKYEKLKRLLSSYERLIVAFSGGVDSSFLLKTAYDVLGE-NVLAISLQTPYI-- 53

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSV-VSWKNSKPQTGLMAAAREARYALISEH---AKT 116
                A+ E+     +   +   H V V     + +T         ++AL S     A+ 
Sbjct: 54  -----AESEIEEARRIADEIGARHLVLVKPWMEELRTNPKERCYLCKHALFSSLTTFAQQ 108

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RR 174
            +  +I      DD +E      +R      + LS             I  P L     +
Sbjct: 109 RDFRVIAEGSNVDDTME------KRPGRVALLELS-------------ILTPLLDVGLSK 149

Query: 175 EDIRSFLLQRNISWCEDPS 193
            +IR       +S    PS
Sbjct: 150 AEIRLLSKAVGLSTWNKPS 168


>gi|237733085|ref|ZP_04563566.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383887|gb|EEO33978.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 515

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   + +      + + + VDH  L
Sbjct: 201 SFVEEQIKAIREKVGNGKVLCALSGGVDSSVAAVLLSKAIGN------QLTCVFVDHGLL 254

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 255 RKNEGDEVEAV 265


>gi|328910625|gb|AEB62221.1| GMP synthetase [Bacillus amyloliquefaciens LL3]
          Length = 516

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 206 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 259

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 260 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 316

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 317 AVKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 371 FKDEVRALGTELGIP 385


>gi|321458097|gb|EFX69171.1| hypothetical protein DAPPUDRAFT_202999 [Daphnia pulex]
          Length = 409

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 58/213 (27%), Gaps = 49/213 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             ++  VSGG DS    + L         V      GK +             +  +V  
Sbjct: 8   RRVVCGVSGGVDSSVAALLLKKKGYDVVGVFMKNWDGKDELGVC--------QSDKDVEV 59

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------------LISEHAK 115
               C  L I    V++             ++ +                         +
Sbjct: 60  AQRTCKILNIPFFEVNFVKEYWNHVFENLLQDYQAGLTPNPDILCNYHIKFDLFFDYAKE 119

Query: 116 TINATLIMTAHTFD-----DQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            ++A  + T H        + +E     T  + S+ D+ ++   LS +  + L       
Sbjct: 120 KLDADFVATGHYARSSLGINSVETETENTKLLTSRDDFKDQTFFLSHIKQSSLKKT---- 175

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             P     + ++R       +      SN  + 
Sbjct: 176 LFPIGGLLKSEVRKLASDNGLEHV---SNRQNS 205


>gi|319940179|ref|ZP_08014532.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus
           1_2_62CV]
 gi|319810650|gb|EFW06980.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus
           1_2_62CV]
          Length = 373

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H      D  E   +   R      ++   LS +    L         P
Sbjct: 117 MTLGADYVATGHYARAKRD--EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKSEVRAIAEKAGLA 189


>gi|315221594|ref|ZP_07863514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus anginosus F0211]
 gi|315189428|gb|EFU23123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus anginosus F0211]
          Length = 373

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H      D  E   +   R      ++   LS +    L         P
Sbjct: 117 MTLGADYVATGHYARAKRD--EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKSEVRAIAEKAGLA 189


>gi|308172519|ref|YP_003919224.1| GMP synthetase [Bacillus amyloliquefaciens DSM 7]
 gi|307605383|emb|CBI41754.1| GMP synthetase [Bacillus amyloliquefaciens DSM 7]
          Length = 513

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 203 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 257 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 314 AVKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 368 FKDEVRALGTELGIP 382


>gi|258405113|ref|YP_003197855.1| GMP synthase [Desulfohalobium retbaense DSM 5692]
 gi|257797340|gb|ACV68277.1| GMP synthase, large subunit [Desulfohalobium retbaense DSM 5692]
          Length = 515

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 74/196 (37%), Gaps = 26/196 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E++R  + +L+    ++  +SGG DS  + + LH  +        +   I VD+  L
Sbjct: 203 SFVETMRDSLPTLIGDGKVVCGLSGGIDSTVVAVLLHKAIGK------QLHCIFVDNGLL 256

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISE 112
           R+   DE   V     R   L + +     +      G+     E R         +  E
Sbjct: 257 RQ---DEGEEVVQYLRRHFDLNLKYVQAQDRFLSRLHGVEDP-EEKRKIIGHTFIEVFEE 312

Query: 113 HAKTI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            AK I +   +     + D +E+V  +      +    + G+ +     + + +  P   
Sbjct: 313 EAKEIKDVQYLAQGTLYPDVIESVSFKGPSAVIKSHHNVGGLPE----RMQMDLVEPLRE 368

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R   ++  + 
Sbjct: 369 LFKDEVRKVAVELGLP 384


>gi|242373921|ref|ZP_04819495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348475|gb|EES40077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus epidermidis M23864:W1]
          Length = 372

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIRRHEDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +++++
Sbjct: 173 IEKSEVRRIAEEQDLA 188


>gi|167760717|ref|ZP_02432844.1| hypothetical protein CLOSCI_03102 [Clostridium scindens ATCC 35704]
 gi|167661604|gb|EDS05734.1| hypothetical protein CLOSCI_03102 [Clostridium scindens ATCC 35704]
          Length = 515

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 25/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           ES+R  +R  V    +L A+SGG DS    + L   + D      + + + VDH  LR+ 
Sbjct: 205 ESIRQ-IREKVGKGKVLCALSGGVDSSVAAVLLSKAVGD------QLTCVFVDHGLLRKN 257

Query: 66  AKDEVRYVSDVC--SRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAK 115
             DEV   +         +    V+ +    +     +  EA+          +  E AK
Sbjct: 258 EGDEVE--AAFGPEGAYDLNFIRVNAQQRFYEKLAGVSEPEAKRKIIGEEFIRVFEEEAK 315

Query: 116 TINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            I A   ++    + D +E+     +    +    + G+ D + +     I  P     +
Sbjct: 316 KIGAVDFLVQGTIYPDVVESGL-GGESAVIKSHHNVGGLPDCVDFK---EIIEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   L+  I 
Sbjct: 372 DEVRKAGLELGIP 384


>gi|255263925|ref|ZP_05343267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thalassiobium sp. R2A62]
 gi|255106260|gb|EET48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thalassiobium sp. R2A62]
          Length = 378

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 75/236 (31%), Gaps = 51/236 (21%)

Query: 1   MFLS-PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M L  P+ S+ F          ++VA+SGG DS  +   L     D     ++      D
Sbjct: 1   MSLDQPLNSLGFA--KAPADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLY----D 54

Query: 60  HC----LRET--AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------- 102
           H      +    A  ++     V   +   H V+ ++N+  +  +   A           
Sbjct: 55  HGAALAKQGACCAGLDIHDARRVAQEMGFPHYVLDYENTFKEAVIDEFADSYLAGATPVP 114

Query: 103 -----REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-- 155
                   ++  + E AK ++A  + T H             QR   + G  L    D  
Sbjct: 115 CIRCNERVKFKDLLETAKDLDADCMATGH-----------YIQRKMGDHGAELHCATDAN 163

Query: 156 --------TILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                   +   D   ++  P      + + R+   +  +S  + P + D  F   
Sbjct: 164 RDQSYFLFSTTLDQLDYLRFPLGHLPSKNETRALAEKYGLSVADKPDSQDICFVPN 219


>gi|170755772|ref|YP_001782543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B1 str. Okra]
 gi|205810298|sp|B1ILH4|MNMA1_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|169120984|gb|ACA44820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B1 str. Okra]
          Length = 353

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 38/133 (28%), Gaps = 35/133 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDE 69
               + +A+SGG DS      L                I +D   R+         A ++
Sbjct: 2   SKGTVALAMSGGVDSSVSAYILKE-------RGYDVIGIYMD-LWRDEREEYCNKSAAED 53

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEH 113
            R V     +L I   V++ +                S        A  R  ++      
Sbjct: 54  ARRV---AEKLDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNRTIKFEAFFNA 110

Query: 114 AKTINATLIMTAH 126
           AK   A  + T H
Sbjct: 111 AKEFGADFMATGH 123


>gi|331084260|ref|ZP_08333365.1| GMP synthase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330401795|gb|EGG81372.1| GMP synthase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 514

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   + +      + + + VDH  L
Sbjct: 200 SFVEESIQAIRKKVGNGKVLCALSGGVDSSVAAVMLSKAVGN------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKDEGDEVEAV 264


>gi|328955218|ref|YP_004372551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coriobacterium glomerans PW2]
 gi|328455542|gb|AEB06736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coriobacterium glomerans PW2]
          Length = 380

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 63/207 (30%), Gaps = 43/207 (20%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHS-----------VLSDRSFGKIKFSAISVDHCLRE 64
           +     +LVA+SGG DS      L             +  + + G+              
Sbjct: 1   MTRKQSVLVAMSGGVDSSVAAHLLLERGYTCIGATMSLYDETTMGRDPEGICGC------ 54

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYA 108
              D+V     VC+RL I H V  +K+               S       A   R  ++ 
Sbjct: 55  --ADDVADARAVCARLGIEHRVFDFKDLFERRVIDRFVEQYLSGRTPNPCADCNRALKFG 112

Query: 109 LISEHAKTINATLIMTAH-----TFDDQLETV--YMRSQRDYAEKGMGLSGMCDTILYDL 161
            + + A  I    I T H     T +D  E      R  R   +     S M  ++  + 
Sbjct: 113 ALLDRALEIGCDFIATGHYARIETREDSEEGTGEGARLLRCATDISKDQSYMLYSLGQER 172

Query: 162 NLWISRPFLRCRRE-DIRSFLLQRNIS 187
              +  P     +  D+R    ++   
Sbjct: 173 LRRVLLPLGELIKSRDVRRIAREQGFP 199


>gi|260589941|ref|ZP_05855854.1| GMP synthase [Blautia hansenii DSM 20583]
 gi|260539748|gb|EEX20317.1| GMP synthase [Blautia hansenii DSM 20583]
          Length = 520

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   + +      + + + VDH  L
Sbjct: 206 SFVEESIQAIRKKVGNGKVLCALSGGVDSSVAAVMLSKAVGN------QLTCVFVDHGLL 259

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 260 RKDEGDEVEAV 270


>gi|110669532|ref|YP_659343.1| tRNA methyl transferase [Haloquadratum walsbyi DSM 16790]
 gi|109627279|emb|CAJ53769.1| tRNA methyl transferase [Haloquadratum walsbyi DSM 16790]
          Length = 371

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 57/202 (28%), Gaps = 42/202 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + +        SL     +LVA SGG DS  +    +  L           A +      
Sbjct: 64  TALNRAAAARDSLADCDGVLVAFSGGVDSAVVATLAYDAL------GSNAIACT------ 111

Query: 64  ETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISEH 113
             +      E+     V + + + H +VS+     +  +          R  R   + + 
Sbjct: 112 AKSETLPAAELEDAHQVAAEIGLPHKIVSFSELNDENFVENGSDRCYHCRTMRLGRMYDA 171

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--R 171
           A       +       D                  GL  + +       L I+ P     
Sbjct: 172 AHEHGIETVCDGTNASD-----------ADGGHRPGLDAVDE-------LNITSPLREHG 213

Query: 172 CRREDIRSFLLQRNISWCEDPS 193
             +ED+R       +S  E PS
Sbjct: 214 LDKEDVRIVAAAYGLSVAEKPS 235


>gi|253681080|ref|ZP_04861883.1| GMP synthase (glutamine-hydrolyzing) [Clostridium botulinum D str.
           1873]
 gi|253562929|gb|EES92375.1| GMP synthase (glutamine-hydrolyzing) [Clostridium botulinum D str.
           1873]
          Length = 512

 Score = 54.1 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 25/192 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++  ++ LV    +L A+SGG DS    + +H  +        + + + VDH  LR+ 
Sbjct: 206 EKIK-AIKELVGDKKVLCALSGGVDSSVAAVLVHKAIGK------QLTCVFVDHGLLRKD 258

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
             D+V  +     +  +    V+ +          S P+T       E       E  K 
Sbjct: 259 EGDQVEAIFK--KQFDMNLIRVNAEERFLGKLKGVSDPETKRKIIGEEFIRVFEEEAGKL 316

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E              +        +  D+   +  P     +++
Sbjct: 317 GQIDFLVQGTIYPDVVE------SGTNTSATIKSHHNVGGLPEDMQFSLIEPLRELFKDE 370

Query: 177 IRSFLLQRNISW 188
           +R+   +  I  
Sbjct: 371 VRAVGEELGIPH 382


>gi|28572257|ref|NP_789037.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Tropheryma whipplei TW08/27]
 gi|44887995|sp|Q83ID3|GUAA_TROW8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28410388|emb|CAD66774.1| GMP synthase [glutamine-hydrolyzing] [Tropheryma whipplei TW08/27]
          Length = 503

 Score = 54.1 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS+      H  + DR         + VDH  LR     E  
Sbjct: 203 IRKTVGCKRVLCALSGGVDSVVAATLTHRAIGDR------LRCVFVDHGLLRLN---ERE 253

Query: 72  YVSDVCSRLRI 82
            V + CS L +
Sbjct: 254 QVEEYCSSLGL 264


>gi|311106916|ref|YP_003979769.1| GMP synthase (glutamine-hydrolyzing) [Achromobacter xylosoxidans
           A8]
 gi|310761605|gb|ADP17054.1| GMP synthase (glutamine-hydrolyzing) [Achromobacter xylosoxidans
           A8]
          Length = 530

 Score = 54.1 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 24/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 214 EAVAR-IREQVGTDEVILGLSGGVDSSVAAALIHKAIGD------QLTCVFVDHGLLR-- 264

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
             DE + V       + +    V             + P+       RE       +  K
Sbjct: 265 -LDEGKQVMQTFAENMGVKIIHVDATAQFMGKLAGVADPEAKRKIIGREFVEVFQEQAGK 323

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +     + D +E+      +      +        +   LNL +  P     ++
Sbjct: 324 QQSAKWLAQGTIYPDVIES---AGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFKD 380

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 381 EVRELGVALGLPP 393


>gi|28493046|ref|NP_787207.1| GMP synthase [Tropheryma whipplei str. Twist]
 gi|44887994|sp|Q83GZ6|GUAA_TROWT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28476086|gb|AAO44176.1| GMP synthase [Tropheryma whipplei str. Twist]
          Length = 503

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS+      H  + DR         + VDH  LR     E  
Sbjct: 203 IRKTVGCKRVLCALSGGVDSVVAATLTHRAIGDR------LRCVFVDHGLLRLN---ERE 253

Query: 72  YVSDVCSRLRI 82
            V + CS L +
Sbjct: 254 QVEEYCSSLGL 264


>gi|305432523|ref|ZP_07401685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli JV20]
 gi|304444562|gb|EFM37213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter coli JV20]
          Length = 338

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L ++  +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKL------HGKPNYHEENIKKVEKVANFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK++    + T
Sbjct: 56  QIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    +LE       +   ++    S    +   +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RLEN---NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA 167


>gi|284925349|gb|ADC27701.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 338

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L ++  +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKL------HGKPNYHEENIKKVEKVANFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK++    + T
Sbjct: 56  QIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    +LE       +   ++    S    +   +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RLEN---NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA 167


>gi|283955497|ref|ZP_06372992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792958|gb|EFC31732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 338

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L ++  +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKL------HGKPNYHEENIKKVEKVANFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK++    + T
Sbjct: 56  QIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    +LE       +   ++    S    +   +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RLEN---NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA 167


>gi|254477701|ref|ZP_05091087.1| GMP synthase [Ruegeria sp. R11]
 gi|214031944|gb|EEB72779.1| GMP synthase [Ruegeria sp. R11]
          Length = 552

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 21/191 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E     +R  V    ++  +SGG DS    I +H  + D      + + + VDH L R+ 
Sbjct: 242 EQAIQAIRDQVGDKKVICGLSGGVDSSVAAILIHEAIGD------QLTCVFVDHGLLRKN 295

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTI---- 117
             +EV  V+       I          +             R+    L  +  +      
Sbjct: 296 EAEEV--VTMFRDNYNIQLIHADESDLFLGELDGQSDPETKRKIIGKLFIDVFQKHADTI 353

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 354 EGAEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 410

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 411 VRALGRELGLP 421


>gi|121613044|ref|YP_999778.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004752|ref|ZP_02270510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|166234848|sp|A1VXD7|MNMA_CAMJJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|87249047|gb|EAQ72009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 338

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L ++  +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKL------HGKPNYHEENIKKVEKVANFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK++    + T
Sbjct: 56  QIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    +LE       +   ++    S    +   +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RLEN---NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA 167


>gi|57237061|ref|YP_178073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni RM1221]
 gi|86149727|ref|ZP_01067957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86151459|ref|ZP_01069674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86154052|ref|ZP_01072253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88597704|ref|ZP_01100937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|148926860|ref|ZP_01810538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205356437|ref|ZP_03223201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|218561738|ref|YP_002343517.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|14195288|sp|Q9PJ66|MNMA_CAMJE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71658012|sp|Q5HXB2|MNMA_CAMJR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|57165865|gb|AAW34644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni RM1221]
 gi|85839995|gb|EAQ57254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85841806|gb|EAQ59053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842466|gb|EAQ59680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88190008|gb|EAQ93984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112359444|emb|CAL34227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|145844437|gb|EDK21545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|205345624|gb|EDZ32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|315057493|gb|ADT71822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni S3]
 gi|315929157|gb|EFV08382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 338

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L ++  +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKL------HGKPNYHEENIKKVEKVANFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK++    + T
Sbjct: 56  QIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    +LE       +   ++    S    +   +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RLEN---NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA 167


>gi|262368696|ref|ZP_06062025.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046]
 gi|262316374|gb|EEY97412.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046]
          Length = 377

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 40/196 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             VC +L I     ++                AA R          E ++    +HA  +
Sbjct: 56  QAVCDKLGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMQL 115

Query: 118 NATLIMTAHTFDDQLETV-------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H    + ET+       Y    R   +       +      ++N  +  P  
Sbjct: 116 GADFIATGHYAR-RGETMTNSKGEEYAPLLRGLDKNKDQTYFLHAVHGREINKTLF-PVG 173

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q ++
Sbjct: 174 EIEKPEVRKIAEQYDL 189


>gi|157414371|ref|YP_001481627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|172046984|sp|A8FJL3|MNMA_CAMJ8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157385335|gb|ABV51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747016|gb|ADN90286.1| tRNA-specific 2-thiouridylase mnmA [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 338

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L ++  +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKL------HGKPNYHEENIKKVEKVANFL 55

Query: 81  RIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + +               V            A   R  +   + E AK++    + T
Sbjct: 56  QIPYHILDLQKDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    +LE       +   ++    S    +   +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RLEN---NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA 167


>gi|242399643|ref|YP_002995068.1| Predicted ATPase of the PP-loop superfamily [Thermococcus sibiricus
           MM 739]
 gi|242266037|gb|ACS90719.1| Predicted ATPase of the PP-loop superfamily [Thermococcus sibiricus
           MM 739]
          Length = 275

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 16/128 (12%)

Query: 7   ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           E ++  +  L+      + A SGG DS   L         +   K+   A+ +DH     
Sbjct: 41  EKIKAELEELMSKVDKAIAAFSGGKDSTVALYL------AKEKYKVDVEAVMIDHGF--M 92

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTIN 118
           AK+ +     +   L +  +V+ +  S                        + E+A    
Sbjct: 93  AKEAIENAKRITEHLDVPLTVLRYDYSNIFRGALLKVKSPCKKCSSRTMGGLKEYALKKG 152

Query: 119 ATLIMTAH 126
              I+T H
Sbjct: 153 VKFIITGH 160


>gi|317404195|gb|EFV84633.1| GMP synthase [Achromobacter xylosoxidans C54]
          Length = 530

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 24/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 214 EAVAR-IREQVGEDEVILGLSGGVDSSVAAALIHKAIGD------QLTCVFVDHGLLR-- 264

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
             DE + V       + +    V             + P+       RE       +  K
Sbjct: 265 -LDEGKQVMQTFAENMGVKIIHVDATAQFMGKLSGVADPEAKRKIIGREFVEVFQEQAGK 323

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +     + D +E+      +      +        +   LNL +  P     ++
Sbjct: 324 QKSAKWLAQGTIYPDVIES---AGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFKD 380

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 381 EVRELGVALGLPP 393


>gi|239627909|ref|ZP_04670940.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518055|gb|EEQ57921.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 513

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    +R  +    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVDTTIKALREKIGDGKVLCALSGGVDSSVAAVMLSKAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|260588671|ref|ZP_05854584.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|331081980|ref|ZP_08331108.1| hypothetical protein HMPREF0992_00032 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541146|gb|EEX21715.1| PP-loop family protein [Blautia hansenii DSM 20583]
 gi|330405575|gb|EGG85105.1| hypothetical protein HMPREF0992_00032 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 282

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 30/174 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG DS  LL+ L      +        A++    L      E+     V     
Sbjct: 23  ICIAFSGGVDS-SLLLMLAKECMKQQKKAGNIHAVTFHTVLHPPCDLEIA--QKVAKEAG 79

Query: 82  IAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             H VV     + +             ++  +  + E+AK+   +++M     DD     
Sbjct: 80  AVHKVVFVNELEQEEIRFNPKDRCYLCKKTLFQKLLEYAKSQGISVVMEGTNEDD----- 134

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
            +   R       GL  + +       L +  P       +E++R    + ++S
Sbjct: 135 -LHVYRP------GLRAIKE-------LGVFSPLAEAGFTKEEVRKLAEELSVS 174


>gi|251795808|ref|YP_003010539.1| PP-loop domain protein [Paenibacillus sp. JDR-2]
 gi|247543434|gb|ACT00453.1| PP-loop domain protein [Paenibacillus sp. JDR-2]
          Length = 267

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 80/248 (32%), Gaps = 44/248 (17%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           P E        L     ++VA SGG DS  LL A        + G     A++       
Sbjct: 2   PTEKYVALQDILREMGSVVVAFSGGVDSTFLLKAAVE-----TLGTGNVLAVT------A 50

Query: 65  TAK----DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHA 114
            ++     E+     +  ++R+ H V+S         ++         + + +  +    
Sbjct: 51  DSETYPTSELEEAKKLAKQIRVQHEVISTSELAIPGYAENNKNRCYFCKSSLFDHLYPLL 110

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +   ++     DD+ E                  GM       +   +        +
Sbjct: 111 EERSFANLVYGVIADDKNE---------------HRPGMQAAKERGVRGPLLE--ADLYK 153

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERV----RVRRF-VRDIDLHALYLKMKKFQDLRVK 229
           ++IR       +   + PS       R+    R+    +  ++    YLK    + +RV+
Sbjct: 154 QEIRELSKVFGLPTWDKPSFACLS-SRIAYGERITNEKLLKVERAEAYLKSLHIRQVRVR 212

Query: 230 VNNAVAML 237
            ++ +A +
Sbjct: 213 THDEIARI 220


>gi|315638313|ref|ZP_07893494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481660|gb|EFU72283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 338

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 22/122 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L     +     +K       H      ++ +  V  V   L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKQAGHEVIGCYMKL------HGKSGYHEENIAKVEKVAKFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK++    + T
Sbjct: 56  QIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AH 126
            H
Sbjct: 116 GH 117


>gi|296282975|ref|ZP_06860973.1| tRNA-specific 2-thiouridylase MnmA [Citromicrobium bathyomarinum
           JL354]
          Length = 384

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 64/207 (30%), Gaps = 50/207 (24%)

Query: 15  SLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET--- 65
            L  PA    I+VA+SGG DS  +        +D     ++      D+     R+    
Sbjct: 18  DLPRPASECRIVVAMSGGVDSSVVAALAAKTGADVVGITLQLY----DYGAATGRKGACC 73

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL---------------- 109
           A D++     V  RL IAH V   +++  ++ +   A +                     
Sbjct: 74  AGDDIADARAVADRLGIAHYVFDHESAFRESVVEQFADDYLAGRTPVPCIRCNMGPKFTD 133

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------Y 159
           +   A+ ++A  + T H             +R     G  L    D              
Sbjct: 134 LLTMARELDADCLATGH-----------YVRRVMGAGGSELHRAEDAGRDQSYFLFATTQ 182

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNI 186
               ++  P     +  +R+   +  +
Sbjct: 183 PQLDFLRFPLGGMPKSQVRALAEEAGL 209


>gi|291539156|emb|CBL12267.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Roseburia intestinalis XB6B4]
          Length = 539

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  V    +L+A+SGG DS      L   +        + + + VDH  L
Sbjct: 215 SFVENTVKEIREKVGNGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLL 268

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 269 RKNEGDEVEEV 279


>gi|291536851|emb|CBL09963.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Roseburia intestinalis M50/1]
          Length = 524

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  V    +L+A+SGG DS      L   +        + + + VDH  L
Sbjct: 200 SFVENTVKEIREKVGNGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEEV 264


>gi|240143280|ref|ZP_04741881.1| GMP synthase [Roseburia intestinalis L1-82]
 gi|257204758|gb|EEV03043.1| GMP synthase [Roseburia intestinalis L1-82]
          Length = 524

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  V    +L+A+SGG DS      L   +        + + + VDH  L
Sbjct: 200 SFVENTVKEIREKVGNGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEEV 264


>gi|83590931|ref|YP_430940.1| GMP synthase [Moorella thermoacetica ATCC 39073]
 gi|91206810|sp|Q2RGP2|GUAA_MOOTA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83573845|gb|ABC20397.1| GMP synthase (glutamine-hydrolyzing) [Moorella thermoacetica ATCC
           39073]
          Length = 516

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 67/192 (34%), Gaps = 20/192 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     +R  V    +L A+SGG DS      +H  + DR       + + V+H L 
Sbjct: 206 SFIEDQVAAIRRQVGNGRVLCALSGGVDSSVAAALVHRAVGDR------LTCVFVNHGLL 259

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL---MAAAREARYAL---ISEHAKT 116
           R+   ++V+        + I +   S +  +  TG+       +   +       E A+ 
Sbjct: 260 RQGEAEQVQRAFGQAMGMNIVYVDASRRFLEKLTGVTDPEEKRKIIGHEFIRVFEEEARK 319

Query: 117 IN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           +     ++    + D +E              +        +  D+ L +  P     ++
Sbjct: 320 LGRVDFLVQGTLYPDVIE------SGTETAAVIKSHHNVGGLPEDMELELIEPLRLLFKD 373

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 374 EVRRVGEELGLP 385


>gi|182625650|ref|ZP_02953419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens D str. JGS1721]
 gi|177909052|gb|EDT71527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens D str. JGS1721]
          Length = 359

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 62/218 (28%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVDHC 61
              +++ +SGG DS      L                      +R  G    SA+     
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAV----- 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-A 105
                 D+ R V     +L I   V+++++S  +                    A  +  
Sbjct: 58  ------DDARRV---AQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYL 108

Query: 106 RYALISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           ++  + + AK I A  + T H       D + +   +RS+ D  ++   L  +    L  
Sbjct: 109 KFDELLQKAKGIGADYVATGHYAKIEERDGRFQ--LIRSKDDRKDQTYALYNLTQEQLEH 166

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             +    P     ++ IR    +  +    D  N  D 
Sbjct: 167 TLM----PCGEFTKDKIREIAKEIGL----DVHNKKDS 196


>gi|168334597|ref|ZP_02692750.1| hypothetical protein Epulo_06348 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 267

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 33/196 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +  ++ F+  LV    + +A SGG DS  LL                  A++ +  L   
Sbjct: 1   MNQLKKFMAELVAQG-VAIAFSGGVDSSLLLKVAAEEGKKLGVL---VHAVTFETSLHPK 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAKTINA 119
           A  E+   + V   +   H V+          +          +   +  + ++    N 
Sbjct: 57  ADLEIA--AKVAEEVGAIHKVIFIDELTKAEIIENPIDRCYHCKRFLFEELIDYTAKHNL 114

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDI 177
              +     DD                   LS     I     L I  P   L+  +  +
Sbjct: 115 KYAVDGTNLDD-------------------LSQYRPGIRALEELGIISPLAKLKIDKATV 155

Query: 178 RSFLLQRNISWCEDPS 193
           R +  Q  +S    PS
Sbjct: 156 RKYAQQMGLSVYNRPS 171


>gi|168218238|ref|ZP_02643863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens NCTC 8239]
 gi|182379744|gb|EDT77223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens NCTC 8239]
          Length = 359

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 62/218 (28%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVDHC 61
              +++ +SGG DS      L                      +R  G    SA+     
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAV----- 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-A 105
                 D+ R V     +L I   V+++++S  +                    A  +  
Sbjct: 58  ------DDARRV---AQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYL 108

Query: 106 RYALISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           ++  + + AK I A  + T H       D + +   +RS+ D  ++   L  +    L  
Sbjct: 109 KFDELLQKAKGIGADYVATGHYAKIEERDGRFQ--LIRSKDDRKDQTYALYNLTQEQLEH 166

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             +    P     ++ IR    +  +    D  N  D 
Sbjct: 167 TLM----PCGEFTKDKIREIAKEIGL----DVHNKKDS 196


>gi|168214260|ref|ZP_02639885.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969]
 gi|170714272|gb|EDT26454.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969]
          Length = 359

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 62/218 (28%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVDHC 61
              +++ +SGG DS      L                      +R  G    SA+     
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAV----- 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-A 105
                 D+ R V     +L I   V+++++S  +                    A  +  
Sbjct: 58  ------DDARRV---AQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYL 108

Query: 106 RYALISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           ++  + + AK I A  + T H       D + +   +RS+ D  ++   L  +    L  
Sbjct: 109 KFDELLQKAKGIGADYVATGHYAKIEERDGRFQ--LIRSKDDRKDQTYALYNLTQEQLEH 166

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             +    P     ++ IR    +  +    D  N  D 
Sbjct: 167 TLM----PCGEFTKDKIREIAKEIGL----DVHNKKDS 196


>gi|168207849|ref|ZP_02633854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens E str. JGS1987]
 gi|169343749|ref|ZP_02864748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens C str. JGS1495]
 gi|169298309|gb|EDS80399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens C str. JGS1495]
 gi|170660837|gb|EDT13520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens E str. JGS1987]
          Length = 359

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 62/218 (28%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVDHC 61
              +++ +SGG DS      L                      +R  G    SA+     
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAV----- 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-A 105
                 D+ R V     +L I   V+++++S  +                    A  +  
Sbjct: 58  ------DDARRV---AQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYL 108

Query: 106 RYALISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           ++  + + AK I A  + T H       D + +   +RS+ D  ++   L  +    L  
Sbjct: 109 KFDELLQKAKGIGADYVATGHYAKIEERDGRFQ--LIRSKDDRKDQTYALYNLTQEQLEH 166

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             +    P     ++ IR    +  +    D  N  D 
Sbjct: 167 TLM----PCGEFTKDKIREIAKEIGL----DVHNKKDS 196


>gi|110802009|ref|YP_699068.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens SM101]
 gi|123047295|sp|Q0SS39|MNMA_CLOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110682510|gb|ABG85880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens SM101]
          Length = 359

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 62/218 (28%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVDHC 61
              +++ +SGG DS      L                      +R  G    SA+     
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAV----- 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-A 105
                 D+ R V     +L I   V+++++S  +                    A  +  
Sbjct: 58  ------DDARRV---AQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYL 108

Query: 106 RYALISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           ++  + + AK I A  + T H       D + +   +RS+ D  ++   L  +    L  
Sbjct: 109 KFDELLQKAKGIGADYVATGHYAKIEERDGRFQ--LIRSKDDRKDQTYALYNLTQEQLEH 166

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             +    P     ++ IR    +  +    D  N  D 
Sbjct: 167 TLM----PCGEFTKDKIREIAKEIGL----DVHNKKDS 196


>gi|110801338|ref|YP_696468.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens ATCC
           13124]
 gi|168211408|ref|ZP_02637033.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626]
 gi|24638315|sp|Q8XJH3|MNMA_CLOPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123049729|sp|Q0TPH2|MNMA_CLOP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110675985|gb|ABG84972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens ATCC 13124]
 gi|170710614|gb|EDT22796.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626]
          Length = 359

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 68/218 (31%), Gaps = 62/218 (28%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVDHC 61
              +++ +SGG DS      L                      +R  G    SA+     
Sbjct: 3   KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAV----- 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-A 105
                 D+ R V     +L I   V+++++S  +                    A  +  
Sbjct: 58  ------DDARRV---AQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYL 108

Query: 106 RYALISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           ++  + + AK I A  + T H       D + +   +RS+ D  ++   L  +    L  
Sbjct: 109 KFDELLQKAKGIGADYVATGHYAKIEERDGRFQ--LIRSKDDRKDQTYALYNLTQEQLEH 166

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
             +    P     ++ IR    +  +    D  N  D 
Sbjct: 167 TLM----PCGEFTKDKIREIAKEIGL----DVHNKKDS 196


>gi|322378091|ref|ZP_08052577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M334]
 gi|321280928|gb|EFX57942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M334]
          Length = 391

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 63/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 23  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 74

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 75  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 134

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 135 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 190

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 191 HLEKPEVRRLAEEAGLA 207


>gi|307705802|ref|ZP_07642645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK597]
 gi|307620634|gb|EFN99727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK597]
          Length = 373

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 63/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRRLAEEAGLA 189


>gi|307710241|ref|ZP_07646684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK564]
 gi|307619003|gb|EFN98136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis SK564]
          Length = 373

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 63/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRRLAEEAGLA 189


>gi|260575041|ref|ZP_05843042.1| GMP synthase, large subunit [Rhodobacter sp. SW2]
 gi|259022663|gb|EEW25958.1| GMP synthase, large subunit [Rhodobacter sp. SW2]
          Length = 518

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++ A+SGG DS    I +H  + D      + + + VDH L R    ++V 
Sbjct: 214 IRAQVGKGRVICALSGGVDSSVAAILIHEAIGD------QLTCVYVDHGLMRLNESEQV- 266

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
            VS       +          +             R+    L  E  +        A  +
Sbjct: 267 -VSMFREHYNLPLIHADESALFLGKLEGVSDPETKRKIIGGLFIEVFEKHAKAIGGAEFL 325

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R+   
Sbjct: 326 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPARMNMQLVEPLRELFKDEVRALGR 382

Query: 183 QRNIS 187
           +  + 
Sbjct: 383 ELGLP 387


>gi|206896038|ref|YP_002247576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738655|gb|ACI17733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 347

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 56/193 (29%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--------VRY 72
            I V +SGG DS        S+L  +  G    +A+ ++  L E    E           
Sbjct: 2   KIAVGLSGGIDSTV------SLLRLKEEGH-HVTAVFLN-MLPEGEYQEKTCCSVDSQLL 53

Query: 73  VSDVCSRLRIAHSV--VSWKNSKPQTGLMAAA--------------REARYALISEHAKT 116
              V     +   V  ++    K    +  A               R  +     E A  
Sbjct: 54  AKRVAMNQGVPFEVWDLTETFQKHVINIFKAMVKKGLTPNPCVFCNRCVKIGAFVELAMQ 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                + T H    Q E    ++   + ++    S M   +   +   +  P     RE+
Sbjct: 114 KGFDAVATGHYAR-QREGNLYKAIDSWKDQ----SYMLALVEKQVLAKVLFPLGELTREE 168

Query: 177 IRSFLLQRNISWC 189
           + S+     I   
Sbjct: 169 VISYAHSHGIKHV 181


>gi|298290963|ref|YP_003692902.1| GMP synthase, large subunit [Starkeya novella DSM 506]
 gi|296927474|gb|ADH88283.1| GMP synthase, large subunit [Starkeya novella DSM 506]
          Length = 533

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 24/192 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E++R  +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR  
Sbjct: 224 EAIRR-IREQVGNEKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLG 276

Query: 66  AKDEVRYVSDVCS-RLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
              E   V  +      I    V  +          + P+       +       +E  K
Sbjct: 277 ---EAEKVVTLFRDAYNIPLVHVDAEELFLGALEGVTDPEVKRKTIGKLFIDVFEAEAKK 333

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+V   S        +        +   +N+ +  P     ++
Sbjct: 334 IGGAAFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKD 390

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  + 
Sbjct: 391 EVRALGRELGLP 402


>gi|254479521|ref|ZP_05092841.1| conserved hypothetical protein TIGR00268 [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034541|gb|EEB75295.1| conserved hypothetical protein TIGR00268 [Carboxydibrachium
           pacificum DSM 12653]
          Length = 250

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 56/185 (30%), Gaps = 46/185 (24%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----KDEVRYVSDVC 77
           LVA SGG DS  L    +  L +         A+++       +     K E+     + 
Sbjct: 2   LVAFSGGVDSTFLAKVAYEELGE------DMLAVTI-------STPLHPKREIEESKKLA 48

Query: 78  SRLRIAHSVVSWKN-------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L   H VV ++                   ++  ++ + + A+      I+     DD
Sbjct: 49  KVLGFPHLVVRYEEVLEIEEFKSNPLNRCYVCKKNLFSKLKDIAEERGFYYIVEGTNADD 108

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIRSFLLQRNISW 188
                              ++           L I  P L     +E+IR F  + ++  
Sbjct: 109 -------------------INDFRPGRKALKELGILSPLLDCGITKEEIRLFSKEMDLPT 149

Query: 189 CEDPS 193
              PS
Sbjct: 150 WNKPS 154


>gi|331089846|ref|ZP_08338739.1| GMP synthase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330403543|gb|EGG83101.1| GMP synthase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 515

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +ES    +R+ V    +L A+SGG DS    + L   +        + + + VDH  LR+
Sbjct: 203 VESTIEAIRAKVGDGKVLCALSGGVDSSVAAVMLSKAIGK------QLTCVFVDHGLLRK 256

Query: 65  TAKDEVRYV 73
              DEV  V
Sbjct: 257 DEGDEVEAV 265


>gi|317500678|ref|ZP_07958896.1| GMP synthase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897872|gb|EFV19925.1| GMP synthase [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 545

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +ES    +R+ V    +L A+SGG DS    + L   +        + + + VDH  LR+
Sbjct: 233 VESTIEAIRAKVGDGKVLCALSGGVDSSVAAVMLSKAIGK------QLTCVFVDHGLLRK 286

Query: 65  TAKDEVRYV 73
              DEV  V
Sbjct: 287 DEGDEVEAV 295


>gi|212721228|ref|NP_001131207.1| hypothetical protein LOC100192515 [Zea mays]
 gi|194690872|gb|ACF79520.1| unknown [Zea mays]
          Length = 486

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 44/204 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------K 67
           + P  + V VSGG DS   L  LH+     +   +K          +E            
Sbjct: 72  IAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIW-------FQEDFRNFWSECPWD 124

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALIS 111
           ++++Y   VC ++ +   VV   +                 R            ++    
Sbjct: 125 EDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFL 184

Query: 112 EHAKTINATLIMTAHTF--------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           E  + +    I + H          + +  +V   S+    ++   LS +  + L     
Sbjct: 185 EAIENLGFDYIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRR--- 241

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     ++++R    Q  + 
Sbjct: 242 -LLFPLGCITKDEVRRLATQMGLP 264


>gi|153815912|ref|ZP_01968580.1| hypothetical protein RUMTOR_02157 [Ruminococcus torques ATCC 27756]
 gi|145846731|gb|EDK23649.1| hypothetical protein RUMTOR_02157 [Ruminococcus torques ATCC 27756]
          Length = 471

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +ES    +R+ V    +L A+SGG DS    + L   +        + + + VDH  LR+
Sbjct: 159 VESTIEAIRAKVGDGKVLCALSGGVDSSVAAVMLSKAIGK------QLTCVFVDHGLLRK 212

Query: 65  TAKDEVRYV 73
              DEV  V
Sbjct: 213 DEGDEVEAV 221


>gi|149175981|ref|ZP_01854598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces maris DSM 8797]
 gi|148845135|gb|EDL59481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces maris DSM 8797]
          Length = 369

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 49/207 (23%)

Query: 21  HILVAVSGGSDSMGLLIAL---------------------HSVLSDRSFGKIKFSAISVD 59
            +++A+SGG DS      L                      ++    S   +   A    
Sbjct: 4   RVVLAMSGGVDSSAAAHLLLEQGYEVIGLFMRSGATEETACAIEDKNSLPVLNLKA---- 59

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAARE---------- 104
           H     +  +      V   L I    +++K++  +          A R           
Sbjct: 60  HKQGCCSASDAADARRVADMLDIPFHALNFKDAFGRIKDYFADEYLAGRTPNPCVMCNNW 119

Query: 105 ARYALISEHAKTINATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
            ++  + E A+ + A+ I T H        D+ +   +R      ++   L G+   +L 
Sbjct: 120 LKFGKLWEFAEQVGASYISTGHYAQLTSLPDETQPALIRGLDRSKDQSYVLFGINRGLL- 178

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNI 186
                I  P     + +IR    +  +
Sbjct: 179 ---DKIIFPVGGFVKPEIREMAGEAGL 202


>gi|49475921|ref|YP_033962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella henselae str. Houston-1]
 gi|81647713|sp|Q6G2J9|MNMA_BARHE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49238729|emb|CAF27985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella henselae str. Houston-1]
          Length = 409

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 35/150 (23%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MFL+ ++     +      + I+VA+SGG DS  +   L     D     ++      DH
Sbjct: 1   MFLNSLD-----LPGQPENSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLY----DH 51

Query: 61  C---LRET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----- 109
                R     A  ++     V   L I H V+ ++    +  +   A    YA      
Sbjct: 52  GAATHRVGACCAGQDIEDARCVAETLGIPHYVLDYEERFREAVIDPFAAS--YAHGETPV 109

Query: 110 -------------ISEHAKTINATLIMTAH 126
                        +   A+ ++A  + T H
Sbjct: 110 PCIACNQTVKFADLLATARELDADALATGH 139


>gi|241895377|ref|ZP_04782673.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Weissella paramesenteroides ATCC 33313]
 gi|241871351|gb|EER75102.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Weissella paramesenteroides ATCC 33313]
          Length = 521

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  + + LH  + D      + ++I VDH  LR+   DEV 
Sbjct: 220 IRETIGDKRVLLGLSGGVDSSVVGVLLHKAIGD------QLTSIFVDHGLLRKNEADEVM 273

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
             + +  +  +    V  +          + P+        E       E  K      +
Sbjct: 274 --AALGGKFGLNIIKVDGQERFLNKLAGVTDPEQKRKIIGNEFIRVFDEEAVKLDGIDFL 331

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P  +  ++++RS   
Sbjct: 332 AQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDIQFQLIEPLNKLFKDEVRSLGE 385

Query: 183 QRNISW 188
           +  +  
Sbjct: 386 KLGMPH 391


>gi|145596344|ref|YP_001160641.1| GMP synthase [Salinispora tropica CNB-440]
 gi|145305681|gb|ABP56263.1| GMP synthase (glutamine-hydrolyzing) [Salinispora tropica CNB-440]
          Length = 517

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS      +H  + D      + + + VDH  LR    ++V 
Sbjct: 211 IREQVGTKEVICGLSGGVDSAVAAALVHRAVGD------QLTCVFVDHGLLRAGEAEQVE 264

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARY---ALISEHAKTINA 119
              D  +   I   VV   +           P+       RE      A   + A   + 
Sbjct: 265 --KDYVAATGIKLRVVDAADQFLTALAGVTDPERKRKIIGREFIRTFEAAARDIAAHGDV 322

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 323 EFLVQGTLYPDVVES-----GGGAGTASIKSHHNVGGLPEDLGFSLVEPLRTLFKDEVRA 377

Query: 180 FLLQRNIS 187
             LQ  + 
Sbjct: 378 LGLQLGLP 385


>gi|254517654|ref|ZP_05129710.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226911403|gb|EEH96604.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 517

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     VR  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 204 SFVEKTIQEVREKVGNGKVLCALSGGVDSSVAAVLLSKAV------GSQLTCVFVDHGLL 257

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 258 RKNEGDEVEEV 268


>gi|222151508|ref|YP_002560664.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Macrococcus caseolyticus JCSC5402]
 gi|222120633|dbj|BAH17968.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Macrococcus caseolyticus JCSC5402]
          Length = 371

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 70/198 (35%), Gaps = 42/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 4   SKTKVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 55

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHA 114
             V  VC+++ I +  V+++     K  T  +   ++ R             +    EHA
Sbjct: 56  EDVIRVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHA 115

Query: 115 KTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             + A  + T H       +D +E   +R   +  ++   L+ +    L      +  P 
Sbjct: 116 VKLGADYVATGHYAQIRRSEDGVE--MLRGVDNNKDQTYFLNQLTQEQLSR----VMFPL 169

Query: 170 LRCRREDIRSFLLQRNIS 187
              ++ ++R   L+ +++
Sbjct: 170 GHLQKPEVREIALKHDLA 187


>gi|289450432|ref|YP_003475365.1| GMP synthase family protein [Clostridiales genomosp. BVAB3 str.
          UPII9-5]
 gi|289184979|gb|ADC91404.1| GMP synthase (glutamine-hydrolyzing) family protein
          [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 330

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+A+SGG DS  +   L   +           A+ V+H L
Sbjct: 32 LIRRQVGDNKVLLALSGGVDSSVVAALLIKAIGR------NLVAVHVNHGL 76


>gi|67458888|ref|YP_246512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia felis URRWXCal2]
 gi|75536671|sp|Q4UM73|MNMA_RICFE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|67004421|gb|AAY61347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia felis URRWXCal2]
          Length = 365

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           + I+VA+SGG DS  +   LH    +     ++      DH +         A  ++   
Sbjct: 9   STIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIYDA 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAKTI 117
             V ++L I H V+ +++   ++ +                    +  ++  + + A+ +
Sbjct: 65  KMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTAREL 124

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L     T   +   ++S P    
Sbjct: 125 GAAQLATGHYVRKVNGDNGAE--LHTGLDPAKDQSYFLF----TTTKEQLEYLSFPLGGL 178

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            +++ R    +  +   + P + D  F
Sbjct: 179 TKDETRRLASKFGLEVADKPDSQDICF 205


>gi|331268103|ref|YP_004347752.1| tRNA-Ile lysidine synthase [Chlorella variabilis]
 gi|325296280|gb|ADZ05000.1| tRNA-Ile lysidine synthase [Chlorella variabilis]
          Length = 569

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 48/173 (27%), Gaps = 47/173 (27%)

Query: 16  LVYPAHILVAVSGGSDSMG----LLIAL----------------------------HSVL 43
           L     +L A+SGG DS+     L   L                              + 
Sbjct: 24  LSEKTRLLCALSGGQDSIVTFFILFHLLSISKQLYKKDTFLYGLVPKGEPHLISLSQKLF 83

Query: 44  SDRSFGK----IKFSAISVDHCLRETAKDEVRYVSDVCSRL----RIAHSVVSWKNSKPQ 95
           + +   K     +   +   H  +        + S+   +L     I ++++     K  
Sbjct: 84  AQKKGNKTIKLPRIEIVYCHHFWQPKNF----FCSEFIFQLSFLVHIPYTLI---LPKTI 136

Query: 96  TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM 148
                 +RE R        +      ++T  T  D LE       R  + K +
Sbjct: 137 LASENRSREWRKKNFYRFLELEKIATLVTGLTKSDTLEKNLTNLFRGTSPKSL 189


>gi|78485443|ref|YP_391368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomicrospira crunogena XCL-2]
 gi|123555534|sp|Q31GM9|MNMA_THICR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78363729|gb|ABB41694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomicrospira crunogena XCL-2]
          Length = 379

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 29/128 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++          D+C    A ++++ V 
Sbjct: 12  KVIVGLSGGVDSSVTALLLKQQGYDVEGLFMKNWEGDDTE----DYC---PAAEDLKDVL 64

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            +C +L I   V ++                 + R          E ++    EHA T+ 
Sbjct: 65  AICEKLDIPLHVENFSGEYWDRVFEHFLAEYQSGRTPNPDILCNKEVKFKAFLEHAMTLG 124

Query: 119 ATLIMTAH 126
           A  I T H
Sbjct: 125 ADYIATGH 132


>gi|237802710|ref|YP_002887904.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231273944|emb|CAX10736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 358

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 63/204 (30%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RET-----AKDE 69
           ++VA+SGG DS  +   L      +  G+           L       ++      A  +
Sbjct: 5   VIVAMSGGVDSSVVAYLL------KKQGEYNVV------GLFMKNWGEQDENGECTATKD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEH 113
            R V  +  +L I +  VS+     +      L   A            RE ++ L+ + 
Sbjct: 53  FRDVERIAEQLSIPYYTVSFYKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKK 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNL 163
            + +    + T H              R     G GLS   D              D   
Sbjct: 113 VRELKGDFLATGH------------YCRG-GADGTGLSRGIDPNKDQSYFLCGTPKDALS 159

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + ++R    +  ++
Sbjct: 160 NVLFPLGGMYKTEVRRIAQEAGLA 183


>gi|307822309|ref|ZP_07652541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacter tundripaludum SV96]
 gi|307736875|gb|EFO07720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacter tundripaludum SV96]
          Length = 363

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 45/196 (22%)

Query: 20  AHILVAVSGGSDS--MGLLIA--------LHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
             ++V +SGG DS    LL+         L     +   G  + +A+           ++
Sbjct: 3   KKVIVGMSGGVDSSVTALLLLEQGHQVTGLFMKNWEEDDGTEQCTAM-----------ED 51

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISE 112
           +     VC +L I    V++              E +                  A ++ 
Sbjct: 52  LADAQQVCDKLGIELKTVNFAAEYWDEVFEVFLSEFKAGRTPNPDILCNKHVKFKAFLNY 111

Query: 113 HAKTINATLIMTAHTF--DDQ-LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             + + A  I T H     +Q  E   ++      E+   L  +    L         P 
Sbjct: 112 AIEDLGAEYIATGHYARVSEQDCEYFLLKGLDPNKEQSYFLYTLGQKQLSRT----LFPI 167

Query: 170 LRCRREDIRSFLLQRN 185
               + +IR+   +  
Sbjct: 168 GHLHKPEIRAMADKAG 183


>gi|163794310|ref|ZP_02188282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium BAL199]
 gi|159180478|gb|EDP64999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium BAL199]
          Length = 394

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 47/215 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEVRYV 73
             ++VA+SGG DS      L     D     ++      DH     R+    A  ++   
Sbjct: 19  RRVVVAMSGGVDSSVTAALLKEAGYDVVGITLQLY----DHGAAVARKGACCAGSDIHDA 74

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTI 117
             V  RL I H V+ +++   ++ +   A                   ++  +   A+ +
Sbjct: 75  RTVAERLGIPHYVLDYESRFRESVIDDFADSYLRGETPIPCVRCNQTVKFRDLLTTARDL 134

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNLWISR 167
            A  + T H             +R     G  L    D              +   ++  
Sbjct: 135 GAEALATGH-----------YVRRVLGPDGPELHRAVDPGKDQSYFLFATTPEQLAFLRF 183

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
           P     +E  R    +  +   + P + D  F   
Sbjct: 184 PLGSMSKEATRDEARRLGLVVQDKPDSQDICFVPN 218


>gi|329114013|ref|ZP_08242780.1| GMP synthase [Acetobacter pomorum DM001]
 gi|326696760|gb|EGE48434.1| GMP synthase [Acetobacter pomorum DM001]
          Length = 533

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + I VDH  LR    D+V 
Sbjct: 229 IREQVGDGKVICGLSGGVDSSVAAVLIHEAIGD------QLTCIFVDHGMLRAGEADDV- 281

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            +     +  I        +         + P+       R        E  K   A  +
Sbjct: 282 -IKTFRGQFNIQLVHRDASDIFLKALEGVTDPEIKRKTIGRLFVEVFEEEATKLGGAQFL 340

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 341 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPDRMNMKLVEPLRELFKDEVRDLGR 397

Query: 183 QRNIS 187
           + +I 
Sbjct: 398 ELDIP 402


>gi|11498169|ref|NP_069395.1| hypothetical protein AF0559 [Archaeoglobus fulgidus DSM 4304]
 gi|2650065|gb|AAB90680.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 265

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 62/199 (31%), Gaps = 39/199 (19%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  ++ +R F+        +++A SGG DS  L               +   A++V   +
Sbjct: 6   LEKLQRMRGFLEGFKG---VVIAFSGGVDSSTLAAVCKD-------AGLDVLAVTV---V 52

Query: 63  RETA-KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR-----EARYALISEHAKT 116
            + +   E++  + +   + + H  V+     P+     + R     +   + +   A+ 
Sbjct: 53  SQKSPSREIKDAAKIAMEIGVKHEFVNMDILTPEFRENTSERCYFCKKKVLSSLVSLAEE 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RR 174
                +       D            +      +  M           +  P+      +
Sbjct: 113 RGYDAVFEGTNASD---------LEGHRPGYKAVKEMHG---------VYSPWAEFGITK 154

Query: 175 EDIRSFLLQRNISWCEDPS 193
           ++IR        S+ + PS
Sbjct: 155 KEIRMVAKSMGFSFYDKPS 173


>gi|83953541|ref|ZP_00962262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841486|gb|EAP80655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfitobacter sp. NAS-14.1]
          Length = 380

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 50/231 (21%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--L 62
           P+ S+ F          ++VA+SGG DS  +   L     D     ++      DH   L
Sbjct: 8   PLNSLGFA--KAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLY----DHGAAL 61

Query: 63  -RET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---------------- 102
            R+    A  ++     V   +   H V+ ++N      +   A                
Sbjct: 62  ARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRCN 121

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD------- 155
              ++  + E AK ++A  + T H             QR     G  L    D       
Sbjct: 122 ERVKFKDLLETAKDLDADCMATGH-----------YIQRKMGLDGAELHCAADANRDQSY 170

Query: 156 ---TILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +   +   ++  P      + D R+   +  +S  + P + D  F   
Sbjct: 171 FLFSTTPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPN 221


>gi|114320607|ref|YP_742290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311715|sp|Q0A8N7|MNMA_ALHEH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114227001|gb|ABI56800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 366

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 40/199 (20%)

Query: 16  LVYPAHILVAVSGGSDS----MGLLIALHS---VLSDRSFGKIKFSAISVDHCLRETAKD 68
           +     ++V +SGG DS    M LL A H    +           +     HC    A++
Sbjct: 1   MGKTDKVVVGLSGGVDSAVAAMRLLEAGHHVEGLFMKNWEDDDTLT-----HC---AAEE 52

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
           ++     V   L I     ++     +       RE R                     +
Sbjct: 53  DLAEAQAVADHLGIRLHRANFAARYREQVFEVCLREYRAGRTPNPDILCNQRIKFRAFLD 112

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----P 168
           HA ++ A+ + T H        V  +  R    +G          LY L     R    P
Sbjct: 113 HALSLGASKVATGHYAG-----VGEQGGRFTLLRGEDPHKDQSYFLYTLGQAQLRHSLFP 167

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R       + 
Sbjct: 168 LSELPKPEVRRQAAAAGLP 186


>gi|34556586|ref|NP_906401.1| ATP-utilizing protein of the PP-loop superfamily [Wolinella
           succinogenes DSM 1740]
 gi|34482300|emb|CAE09301.1| ATP-UTILIZING ENZYME OF THE PP-LOOP SUPERFAMILY [Wolinella
           succinogenes]
          Length = 271

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 40/200 (20%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-- 59
            L   ES++  +++L     ++VA SGG DS  LL A H  L +++ G      I+V   
Sbjct: 1   MLERYESLKKEIQAL---ESLIVAFSGGVDSSLLLKAAHDALGEKALG------ITVTTP 51

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAK 115
           +     A+ E++        +   H V+S+       +  T      + A ++ + + A 
Sbjct: 52  YM----AEREIKEAIAFAKEIGARHEVLSFPWIPTLKENPTNRCYLCKHALFSSLKKLAY 107

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCR 173
                 I      DD  E                        +    L I+ P   L   
Sbjct: 108 QRGFAHIAEGSNLDDTKE-------------------ERPGRIALQELGIATPLLSLGLS 148

Query: 174 REDIRSFLLQRNISWCEDPS 193
           + +IR    + ++     PS
Sbjct: 149 KNEIRQISKELSLKSWNRPS 168


>gi|324991889|gb|EGC23812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK405]
 gi|324996221|gb|EGC28131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK678]
 gi|327458514|gb|EGF04864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1]
 gi|327471584|gb|EGF17027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK408]
 gi|327490314|gb|EGF22101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis SK1058]
          Length = 373

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 63/199 (31%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H    Q+   +   +   R      ++   LS +    L         P
Sbjct: 117 LTLGADYVATGHYA--QVKRDKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 171 LGHLEKPEVRAIAERAGLA 189


>gi|313618826|gb|EFR90711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria innocua FSL S4-378]
          Length = 371

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIATKAGLA 189


>gi|16800615|ref|NP_470883.1| tRNA-specific 2-thiouridylase MnmA [Listeria innocua Clip11262]
 gi|24638323|sp|Q92BK1|MNMA_LISIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|16414020|emb|CAC96778.1| lin1547 [Listeria innocua Clip11262]
          Length = 371

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGGM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIATKAGLA 189


>gi|299133665|ref|ZP_07026859.1| GMP synthase, large subunit [Afipia sp. 1NLS2]
 gi|298591501|gb|EFI51702.1| GMP synthase, large subunit [Afipia sp. 1NLS2]
          Length = 531

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 31/197 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE +R  V        ++  +SGG DS    + +H  + D      + + + VDH  L
Sbjct: 222 EAIEKIRAQVGQ----GRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLL 271

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKNSKPQTGLMA------AAREARYALI----- 110
           R     E   V D+      I    V    SK   G +A      A R+    L      
Sbjct: 272 RM---AEAETVVDLFRHHYNIPL--VHVDASKTFLGELAGVTDPEAKRKIIGKLFIDVFD 326

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E  K   A  +     + D +E+V   S        +        +   + + +  P  
Sbjct: 327 EEAKKIGGADFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPARMKMKLVEPLR 383

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 384 ELFKDEVRALGRELGLP 400


>gi|144898006|emb|CAM74870.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 517

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 65/187 (34%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS  +   +H  + D      + + + VDH L R    ++V 
Sbjct: 212 IRQQVGKGKVICGLSGGVDSSVVAALIHEAIGD------QLTCVYVDHGLMRLGESEQVV 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NAT 120
            V     R  I    V    S    G +A      + R         +  E AK I  A 
Sbjct: 266 SVFR--DRFNINL--VHKDASDLFLGRLAGMTDPEQKRKTIGGLFIDVFEEEAKRIGGAD 321

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   +N+ +  P     ++++R  
Sbjct: 322 FLAQGTLYPDVIESV---SFIGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVREL 378

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 379 GRELGLP 385


>gi|88812884|ref|ZP_01128128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrococcus mobilis Nb-231]
 gi|88789806|gb|EAR20929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrococcus mobilis Nb-231]
          Length = 374

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 25/126 (19%)

Query: 21  HILVAVSGGSDS-MGLLIAL---HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             +V +SGG DS +  L+ L   H++              +  +C   +A+ ++ Y   V
Sbjct: 6   RYIVGLSGGVDSAVAALLLLEQGHAIQGLFMRNWEDDDTAT--YC---SAEQDLAYAKQV 60

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINAT 120
           C++L I   V ++ +           RE R                      +A+ +   
Sbjct: 61  CAQLDIPLHVANFAHEYRAEVFDHCLREYRRGHTPNPDILCNQRIKFHAFINYAQRLGTD 120

Query: 121 LIMTAH 126
            I T H
Sbjct: 121 HIATGH 126


>gi|330965599|gb|EGH65859.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 366

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|325273429|ref|ZP_08139681.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51]
 gi|324101442|gb|EGB99036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51]
          Length = 374

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
                ++V +SGG DS    LL+       +  F K             E        A+
Sbjct: 9   PAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMK----------NWEEDDGTEYCTAR 58

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
           +++     VC R+ I     +     W N          A           RE ++    
Sbjct: 59  EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFL 118

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           ++A ++ A LI T H     D    T  ++      ++   L  +    +         P
Sbjct: 119 DYALSLGADLIATGHYVRRRDTGAVTELLKGLDPNKDQSYFLHAVGGKEIART----LFP 174

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 175 VGELEKPEVRAIAEKHGLA 193


>gi|332652624|ref|ZP_08418369.1| GMP synthase, C- domain protein [Ruminococcaceae bacterium D16]
 gi|332517770|gb|EGJ47373.1| GMP synthase, C- domain protein [Ruminococcaceae bacterium D16]
          Length = 429

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 55/195 (28%), Gaps = 42/195 (21%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--------- 62
            +R  V    +L+A+SGG DS  +   L   +        + + + V+H L         
Sbjct: 127 LIRRQVGDKKVLLALSGGVDSSVVAALLIKAIGK------QLTCVHVNHGLLRKGEPEQV 180

Query: 63  ----RETAKDE---VRYVSDVCSRL-RI--AHSVVSWKNSKPQTGLMAAAREARYALISE 112
               R+        V  V     +L  +            +        AR+        
Sbjct: 181 VKVFRDEMDANLVYVDAVDRFLDKLAGVSDPEQKRKIIGGEFIRVFEEEARKL------- 233

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                  + +     + D +E            K +        +  DLN  +  P    
Sbjct: 234 ----EGISFLGQGTIYPDIIE------SGTKTVKAVKSHHNVGGLPEDLNFELVEPLKML 283

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+      + 
Sbjct: 284 FKDEVRACGKALGLP 298


>gi|290581402|ref|YP_003485794.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Streptococcus mutans NN2025]
 gi|254998301|dbj|BAH88902.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Streptococcus mutans NN2025]
          Length = 373

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 39/196 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D   TV  +R   +  ++   LS +    L      +  P  
Sbjct: 117 MTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQK----VMFPLG 172

Query: 171 RCRREDIRSFLLQRNI 186
             ++  +R    +  +
Sbjct: 173 HLQKPRVREIAEKAGL 188


>gi|24380473|ref|NP_722428.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans UA159]
 gi|30173426|sp|Q8DRS4|MNMA_STRMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24378503|gb|AAN59734.1|AE015035_3 putative tRNA [Streptococcus mutans UA159]
          Length = 373

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 39/196 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L     D      +++    +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D   TV  +R   +  ++   LS +    L      +  P  
Sbjct: 117 MTLGADYVATGHYAQVSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQK----VMFPLG 172

Query: 171 RCRREDIRSFLLQRNI 186
             ++  +R    +  +
Sbjct: 173 HLQKPRVREIAEKAGL 188


>gi|289550612|ref|YP_003471516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis HKU09-01]
 gi|315658107|ref|ZP_07910979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis M23590]
 gi|289180144|gb|ADC87389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis HKU09-01]
 gi|315496436|gb|EFU84759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus lugdunensis M23590]
          Length = 370

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEEEYWNKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAHTF-----DD-QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H       DD  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARLKRYDDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    ++ ++
Sbjct: 173 IEKKEVRRIAEEQGLA 188


>gi|255506865|ref|ZP_05382504.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis D(s)2923]
 gi|289525326|emb|CBJ14802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis Sweden2]
 gi|296434876|gb|ADH17054.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/150]
 gi|296438596|gb|ADH20749.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/11023]
          Length = 358

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 63/204 (30%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RET-----AKDE 69
           I+VA+SGG DS  +   L      +  G+           L       ++      A  +
Sbjct: 5   IIVAMSGGVDSSVVAYLL------KKQGECNVV------GLFMKNWGEQDENGECTATKD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEH 113
            R V  +  +L I +  VS+     +      L   A            RE ++ L+ + 
Sbjct: 53  FRDVERIAEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKK 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNL 163
            + +    + T H              R     G GLS   D              D   
Sbjct: 113 VRELKGDFLATGH------------YCRG-GADGTGLSRGIDPNKDQSYFLCGTPKDALS 159

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + ++R    +  ++
Sbjct: 160 NVLFPLGGMYKTEVRRIAQEAGLA 183


>gi|153951834|ref|YP_001397317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|166234847|sp|A7H1D7|MNMA_CAMJD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152939280|gb|ABS44021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter jejuni subsp. doylei 269.97]
          Length = 338

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L ++  +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKL------HGKPNYHEENIKKVEKVANFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK +    + T
Sbjct: 56  QIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    +LE       +   ++    S    +   +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RLEN---NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA 167


>gi|320335245|ref|YP_004171956.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM
           21211]
 gi|319756534|gb|ADV68291.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM
           21211]
          Length = 386

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 36/197 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
              +L A+SGG DS      L       + +   F        + D C    A  E R V
Sbjct: 9   GKRVLCAMSGGVDSSVSAQLLKDQGYDVIGAMMRFWPDNKRTDTFDSCCSPDAAYEARRV 68

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT----GLMAAAR------------EARYALISEHAKTI 117
           +D   ++ +   ++ +++   +      L   AR            + ++  + + A+ +
Sbjct: 69  AD---QVGVPFYLLDYRDEFKRNIMDPFLEDYARGRTPNPCVNCNTKVKFDALVKKARML 125

Query: 118 NATLIMTAH--------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               + T H        T D  +E   ++  R    +      +  T   D   +I  P 
Sbjct: 126 GCEYVATGHYVRREDVPTADGGVE---VQFHRGDDPRKDQTYFLWGT-PRDALKYILFPV 181

Query: 170 LRCRREDIRSFLLQRNI 186
            +  +  +R    +  +
Sbjct: 182 GQMEKPRVREIAEEHGL 198


>gi|256544685|ref|ZP_05472057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399574|gb|EEU13179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 369

 Score = 53.8 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 38/189 (20%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-----DEVRY--VSDVC 77
            VSGG DS    + L     D S   +K           E  +      EV Y     VC
Sbjct: 14  GVSGGVDSSVAALLLKKEGYDVSGIFMK--------NWDEEDENGVCTAEVDYEDAVKVC 65

Query: 78  SRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTINATL 121
           +++ I +  ++++                  R          E ++    ++AK + A  
Sbjct: 66  NQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADY 125

Query: 122 IMTAHTFD-DQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           + T H    D+   ET  +R      ++   LS +    + D    +  P     ++++R
Sbjct: 126 LATGHYARVDRSEGETKMLRGLDSNKDQTYFLSQLSQDQIKD----VLFPVGDLDKKEVR 181

Query: 179 SFLLQRNIS 187
               + N++
Sbjct: 182 KIAKENNLA 190


>gi|294010267|ref|YP_003543727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sphingobium japonicum UT26S]
 gi|292673597|dbj|BAI95115.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sphingobium japonicum UT26S]
          Length = 373

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 51/217 (23%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-- 62
           P +  +F +++      I+VA+SGG DS  +        ++     ++      DH    
Sbjct: 4   PFQPAQFDLKAPPDARRIVVAMSGGVDSSVVAALAARTGAETIGVTLQLY----DHGAAV 59

Query: 63  ----RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------- 109
                  A  ++R    V  R+ IAH V  +++    + +   A E  Y           
Sbjct: 60  GRTGSCCAGQDIRDARAVADRIGIAHYVFDYESRFRDSVIADFADE--YMAGRTPIPCVK 117

Query: 110 ---------ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL-- 158
                    + + A+ + A  + T H             +R    +G  L    D+    
Sbjct: 118 CNMGVKFTDLFQIARDLGADCLATGH-----------YVRRVEGPQGAELHRAADSARDQ 166

Query: 159 --------YDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                        ++  P     +  +R    +  +S
Sbjct: 167 SYFLFATTQAQLDYLRFPLGGLPKPQVREIAAELGLS 203


>gi|255348647|ref|ZP_05380654.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70]
 gi|255503187|ref|ZP_05381577.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70s]
          Length = 358

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 61/204 (29%), Gaps = 63/204 (30%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RET-----AKDE 69
           I+VA+SGG DS  +   L      +  G+           L       ++      A  +
Sbjct: 5   IIVAMSGGVDSSVVAYLL------KKQGEYNVV------GLFMKNWGEQDENGECTATKD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEH 113
            R V  +  +L I +  VS+     +      L   A            RE ++ L+ + 
Sbjct: 53  FRDVERIAEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKK 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNL 163
            + +    + T H              R     G GLS   D              D   
Sbjct: 113 VRELKGDFLATGH------------YCRG-GADGTGLSRGIDPNKDQSYFLCGTPKDALS 159

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + ++R    +  ++
Sbjct: 160 NVLFPLGGMYKTEVRRIAQEAGLA 183


>gi|57640128|ref|YP_182606.1| GMP synthase subunit B [Thermococcus kodakarensis KOD1]
 gi|62286909|sp|Q5JFM1|GUAAB_PYRKO RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|57158452|dbj|BAD84382.1| GMP synthase, PP-loop-ATPase component [Thermococcus kodakarensis
           KOD1]
          Length = 307

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 29/197 (14%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M+ + IE     +R  V     ++A+SGG DS    +  H  + DR        A+ V+ 
Sbjct: 1   MWENFIEEKVKEIRETVGDGKAIIALSGGVDSSTAAVLAHRAIGDR------LHAVFVNT 54

Query: 61  CL-RETAKDEVRY-VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYAL---I 110
              R+    E  + V        +    V      ++  K  T      +          
Sbjct: 55  GFMRKG---EPEFVVKTFRDEFGLNLHYVDASERFFRELKGVTDPEEKRKIIGRVFIEVF 111

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E AK INA  ++      D +E           +    + G+ + +    NL +  P  
Sbjct: 112 EEVAKEINADFLIQGTIAPDWIE------SHGKIKSHHNVGGLPERL----NLKLIEPLR 161

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  + 
Sbjct: 162 DLYKDEVRELAKELGLP 178


>gi|329733069|gb|EGG69406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 372

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 65/195 (33%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            +++ +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVIGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
            +VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 173 IEKSEVRRIAEEQGL 187


>gi|325973331|ref|YP_004250395.1| GMP synthase [Mycoplasma suis str. Illinois]
 gi|325989766|ref|YP_004249465.1| GMP synthase (glutamine-hydrolyzing) [Mycoplasma suis KI3806]
 gi|323574851|emb|CBZ40511.1| GMP synthase (Glutamine-hydrolyzing) [Mycoplasma suis]
 gi|323651933|gb|ADX98015.1| GMP synthase [Mycoplasma suis str. Illinois]
          Length = 538

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54
           S IE++R   +  +  A ILVA+SGG DS  L+  L  +  DR+   +  S
Sbjct: 222 SKIEALREKYKEQLKDARILVALSGGLDSSVLIHFLAEMTIDRNIYPVYIS 272


>gi|160936182|ref|ZP_02083555.1| hypothetical protein CLOBOL_01078 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440992|gb|EDP18716.1| hypothetical protein CLOBOL_01078 [Clostridium bolteae ATCC
           BAA-613]
          Length = 513

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    +R  +    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVDTTIKALREKIGNGKVLCALSGGVDSSVAAVMLSKAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|160890666|ref|ZP_02071669.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492]
 gi|270295763|ref|ZP_06201963.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|317479803|ref|ZP_07938923.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
 gi|156859665|gb|EDO53096.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492]
 gi|270273167|gb|EFA19029.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|316904009|gb|EFV25843.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
          Length = 364

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 55/189 (29%), Gaps = 39/189 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LV +SGG DS    + L           +                DE      + 
Sbjct: 4   PGKRVLVGMSGGIDSTATCLMLRE--QGYEIIGLTMWVW----------GDEPVEARSLA 51

Query: 78  SRLRIAHSVVSWKNSKPQ---TGLMAAAREAR-------------YALISEHAKTINATL 121
             + I H V   +++  +      +   R  R             + +++E A  +    
Sbjct: 52  DSMGIEHYVADERDAFRRIIVRNFIDEYRRGRTPNPCVMCNPLFKFRILTEWADRLGCAF 111

Query: 122 IMTAHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + T H    +LE     T  +    D  ++   L  +   +L         P     +  
Sbjct: 112 VATGHYT--RLEERNGKTYIVAGDDDKKDQSYFLWRLGQEVLKRC----IFPLGAFTKMQ 165

Query: 177 IRSFLLQRN 185
           +R +L  + 
Sbjct: 166 VRGYLRDKG 174


>gi|297171606|gb|ADI22602.1| ATP-utilizing enzymes of the PP-loop superfamily [uncultured
           verrucomicrobium HF0500_16O23]
          Length = 273

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 50/197 (25%), Gaps = 46/197 (23%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  ++S+R  +R        LVA SGG DS+ L    H  L +     I           
Sbjct: 5   LDKLKSLRAVLREY---GSCLVAYSGGVDSVLLAKVAHDELGEHMLAAI----------- 50

Query: 63  RETAK----DEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALI---SE 112
              +      E++    + +       ++    + N    +         +Y L      
Sbjct: 51  -ADSASLPRRELKEAKKISAEFGFPLEILRTAEFTNEDYTSNPENRCYHCKYELFTHLEP 109

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--L 170
            A      +I       D                   +       +      +  P    
Sbjct: 110 LASERGMRVIAYGENASD-------------------IGDWRPGSIAAEEFEVRAPLKEA 150

Query: 171 RCRREDIRSFLLQRNIS 187
              ++DIR       + 
Sbjct: 151 GLSKDDIREISAHLGLP 167


>gi|78222093|ref|YP_383840.1| tRNA-specific 2-thiouridylase MnmA [Geobacter metallireducens
           GS-15]
 gi|123572471|sp|Q39XA9|MNMA_GEOMG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78193348|gb|ABB31115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter metallireducens GS-15]
          Length = 368

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 44/204 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRET-------- 65
             I+VA+SGG DS      L     +      + +   KFSA                  
Sbjct: 7   KRIVVAMSGGVDSSVTAALLKEEGHEVIGISMQVWDYSKFSA--------PEGEKFDTCC 58

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYAL 109
           + D++     V  ++ I   VV+++    +  +          R            ++ L
Sbjct: 59  SLDDIHDARRVAEQIGIPFYVVNFEEEFQRLVIDDFVDEYFRGRTPNPCVRCNQRVKFEL 118

Query: 110 ISEHAKTINATLIMTAHTFDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           +   A+ + A L+ T H    ++E          R     G   S    T+  +    ++
Sbjct: 119 LLRKARELGADLLATGHYA--RIERGGDGLFHLLRGDDP-GKDQSYFLFTLTQEQLARVT 175

Query: 167 RPFLRCRREDIRSFLLQRNISWCE 190
            P     + ++R    +  +   E
Sbjct: 176 FPLGGMTKPEVRQLATRFGLRVAE 199


>gi|218282969|ref|ZP_03489071.1| hypothetical protein EUBIFOR_01657 [Eubacterium biforme DSM 3989]
 gi|218216163|gb|EEC89701.1| hypothetical protein EUBIFOR_01657 [Eubacterium biforme DSM 3989]
          Length = 515

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E     +R  V    +L A+SGG DS    + L   + +      + + + VDH  L
Sbjct: 201 NFVEEQIKAIREKVGDGKVLCALSGGVDSSVAAVLLSKAIGN------QLTCVFVDHGLL 254

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 255 RKNEGDEVEAV 265


>gi|255934774|ref|XP_002558414.1| Pc12g16160 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583033|emb|CAP81243.1| Pc12g16160 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 535

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 71/197 (36%), Gaps = 36/197 (18%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRETAKDEV 70
           +R+LV P   +L AVSGG DS      +   + DR      F A+ VD  C+R    + V
Sbjct: 222 IRNLVGPTGQVLGAVSGGVDSTVAASLMTEAIGDR------FHAVLVDNGCMRLNECEVV 275

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTG-----------LMAAAREARYALI 110
           + V     +L I  +VV               P+                 AR+      
Sbjct: 276 KEVLQ--KQLGINLTVVDASEEFLAGLKGEHDPEKKRKFIGGKFIDVFEEEARKIEAKSA 333

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            +    +  TL      + D +E++  +      +    + G+ + ++    L +  P  
Sbjct: 334 GKVEWFLQGTL------YPDVIESISFKGPSQTIKTHHNVGGIAERLMAGHGLKLIEPLR 387

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    Q  IS
Sbjct: 388 ELFKDEVRELGRQLKIS 404


>gi|160890963|ref|ZP_02071966.1| hypothetical protein BACUNI_03408 [Bacteroides uniformis ATCC 8492]
 gi|270294278|ref|ZP_06200480.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481492|ref|ZP_07940557.1| GMP synthase domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156859184|gb|EDO52615.1| hypothetical protein BACUNI_03408 [Bacteroides uniformis ATCC 8492]
 gi|270275745|gb|EFA21605.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902338|gb|EFV24227.1| GMP synthase domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 517

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 73/193 (37%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    ++  +    +++ +SGG DS    + LH  +          + I VDH  L
Sbjct: 198 SFVDTTVAELKEQLGNDRVILGLSGGVDSSVAAVLLHRAIGK------NLTCIFVDHGLL 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
           R+     V +  D  C  L +     S K        ++P+       R+      +E  
Sbjct: 252 RKNEFKNVMH--DYECLGLNVIGVDASEKFFKDLEGVTEPEQKRKIIGRDFIEVFDAEAH 309

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  +A  +     + D++E+  +       +    + G+ +    ++NL +  P     +
Sbjct: 310 KITDARWLAQGTIYPDRIES--LNITGKTIKSHHNVGGLPE----EMNLRLCEPLQWLFK 363

Query: 175 EDIRSFLLQRNIS 187
           +++R    +  + 
Sbjct: 364 DEVRRVGRELGMP 376


>gi|332157834|ref|YP_004423113.1| hypothetical protein PNA2_0192 [Pyrococcus sp. NA2]
 gi|331033297|gb|AEC51109.1| hypothetical protein PNA2_0192 [Pyrococcus sp. NA2]
          Length = 260

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 61/208 (29%), Gaps = 40/208 (19%)

Query: 1   MFLSPIESVRFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M  S IE ++ F  ++ +    ILV  SGG DS   L  L           +  +A++  
Sbjct: 1   MLDSIIEEIKSFAEKAKLNQEKILVLFSGGKDSSLTLYLLKR-------AGLDVAALTFF 53

Query: 60  HCLRETAKDEVRYVS---DVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALI 110
           H            V         L + H +V        K    +  +    ++      
Sbjct: 54  HRWS-----WPEVVKWGMRFTKELGVEHYLVDITESLLKKAVGRKGPICIHCKKVMLWNA 108

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI----LYDLNLWIS 166
              A     +++      +D++              G  L      I    +  + + I 
Sbjct: 109 KWFALNNGFSILAKGDNANDKI-------------VGTLLDQCPGDIRLCEIPKIGIPIF 155

Query: 167 RPFLRCRREDIRSFLLQRNI-SWCEDPS 193
           RP ++ +   +     +  I  +     
Sbjct: 156 RPLIKYKATMVEKLAEEAGIRPYRMYEH 183


>gi|294055330|ref|YP_003548988.1| exsB protein [Coraliomargarita akajimensis DSM 45221]
 gi|293614663|gb|ADE54818.1| exsB protein [Coraliomargarita akajimensis DSM 45221]
          Length = 240

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 39/187 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS  LL  L +V ++         A+SV++  R     E+   + +C+ + + H 
Sbjct: 7   YSGGLDSTVLLYHLRAVGAE-------LFALSVNYGQRHC--CELERAAQICAVVDVPHQ 57

Query: 86  ------VVSWKNSKPQTGLMAAAREARY------------------ALISEHAKTINATL 121
                 V S       T       E  Y                  AL + HA ++ A  
Sbjct: 58  IADLSSVQSLLAGSSLTSPEIDVAEGHYTEETMKTTVVPNRNMILLALATGHALSVKAES 117

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +  A    D           D   +          +     + + RPF+   + DI    
Sbjct: 118 VAYAAHSGDHA------IYPDCRNEFADAMAAAMALCDWNQVKLDRPFVDWTKADIVRRG 171

Query: 182 LQRNISW 188
            +  + +
Sbjct: 172 AELKVPF 178


>gi|139438181|ref|ZP_01771734.1| Hypothetical protein COLAER_00722 [Collinsella aerofaciens ATCC
           25986]
 gi|133776378|gb|EBA40198.1| Hypothetical protein COLAER_00722 [Collinsella aerofaciens ATCC
           25986]
          Length = 532

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 69/200 (34%), Gaps = 28/200 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E++    R  V    +++A+SGG DS  +          R+ GK + + + ++H  L
Sbjct: 203 NLVETMTAEFREKVGDDRVILALSGGVDSSVVAAL-----GARAVGK-QMTCVFINHGLL 256

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYAL---ISEHA 114
           R+   ++V  V     +  +    V  ++   +     T      R             A
Sbjct: 257 RKGEPEQVEEV--FTKQFDVDFIHVHAEDRYAELLAGVTEPEEKRRIIGTQFWKEFFAVA 314

Query: 115 KTINAT-----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISR 167
           + +         +     + D +E+      R    K   +    + I +   +   +  
Sbjct: 315 QQLETDGKPVKYLAQGTIYPDIIES----GARKTGGKTATIKSHHNLIPFPEGVHFDLIE 370

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R+  L   + 
Sbjct: 371 PLDHFFKDEVRALGLALGLP 390


>gi|115376200|ref|ZP_01463442.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821768|ref|YP_003954126.1| hypothetical protein STAUR_4519 [Stigmatella aurantiaca DW4/3-1]
 gi|115366773|gb|EAU65766.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394840|gb|ADO72299.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 293

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 76/248 (30%), Gaps = 48/248 (19%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +E++R  +R+       LVA SGG DS  +L      L +R+      SA         
Sbjct: 17  KLEAMRAAIRAHGTA---LVAFSGGVDSTFVLKVAVEELGERALAVTALSA--------S 65

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTIN 118
            A +E +   ++ +R    H V++         +   T      +   Y L     + + 
Sbjct: 66  VAPEEEQEARELAARFGARHEVLTSNELANPQYAANPTNRCYFCKTELYDLCEARRQALG 125

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRED 176
             +++     DD                                  +  P       +E+
Sbjct: 126 YAVVLDGFNADD-------------------FKDHRPGHKAAQEHRVQSPLAQAGLTKEE 166

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVRV-------RRFVRDIDLHALYLKMKKFQDLRVK 229
           IR++     +   + P          R+       R  +  I      L+   F+  RV+
Sbjct: 167 IRAWSHHLGLPTWDKP---QMACLASRIPYGTSVTRERLFQIARAESELRRMGFRQFRVR 223

Query: 230 VNNAVAML 237
            +  VA L
Sbjct: 224 YHEQVARL 231


>gi|325189345|emb|CCA23865.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14]
 gi|325189563|emb|CCA24050.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14]
          Length = 439

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 48/201 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           H+++ +SGG DS    + L         V         +  A             +++ V
Sbjct: 29  HVVIGMSGGVDSSVAALLLKQQGHKVTGVYMKNWDSSDEVGAQCC-----PQ-DQDLKDV 82

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT-------GLMAAA---------REARYALISEHAKTI 117
             VC +L I     ++ +S   T       G  A           RE ++      A T+
Sbjct: 83  QSVCKQLDIPIHTTNFVSSYWNTVFAPCLEGFEAGLTPNPDILCNREIKFKEFIRFADTL 142

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEK------GMGLSGMCDTILYDLNL------WI 165
           +A ++ T H          ++  +   +         GL  + D   +   +       +
Sbjct: 143 HADVVATGHYA-------LLKKAKSNGQSNEYHQLYAGLDPLKDQTYFLSQVPGSSFSKV 195

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P    R+ ++R      ++
Sbjct: 196 LFPLGSYRKAEVREIAKSHHL 216


>gi|153814505|ref|ZP_01967173.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756]
 gi|317500546|ref|ZP_07958768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089354|ref|ZP_08338254.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847999|gb|EDK24917.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756]
 gi|316898056|gb|EFV20105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405417|gb|EGG84952.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 356

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 42/211 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDH-----CLRETAKDEV 70
             ++V +SGG DS      L     D     ++        +V+       L   A ++ 
Sbjct: 2   KKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEDVCTVEENGGCCGLS--AVEDA 59

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
           R V    + L I + V++++    +  +   A                R  ++  + + +
Sbjct: 60  RRV---AAALGIPYYVMNFREEFQKNVIDYFADSYVNGQTPNPCIACNRYVKWEALLKRS 116

Query: 115 KTINATLIMTAHTFDDQLETV------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +I A  I T H    ++E +        RS     ++   L  +    L    +    P
Sbjct: 117 ISIGADFIATGHYA--RVEQLSNGRYALRRSATAAKDQTYALYNLTQEQLKRTLM----P 170

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                +E++R    +  +   + P + D  F
Sbjct: 171 VGEYTKEEVRVIAEKIGLLVADKPDSQDICF 201


>gi|297625877|ref|YP_003687640.1| GMP synthase [glutamine-hydrolyzing] (glutamine amidotransferase)
           (GMP synthetase) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921642|emb|CBL56199.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 517

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L A+SGG DS     A+ + L  R+ G  + +   +DH  LR+   ++V+
Sbjct: 211 IRAQVGDKRVLCALSGGVDS-----AVAAALVQRAIGD-QLTCCFIDHGLLRKGEAEQVK 264

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTINA 119
           +  D      +   V              S+P+       RE   +      + A     
Sbjct: 265 H--DFVQITGVDLVVADESERFLSALAGVSEPEAKRKIIGREFIRSFEDVARQIAGDKGI 322

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 323 DFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPDDLQFTLIEPLRALFKDEVRA 377

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 378 VGAELGLP 385


>gi|218128478|ref|ZP_03457282.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697]
 gi|317475697|ref|ZP_07934957.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|217989369|gb|EEC55682.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697]
 gi|316908153|gb|EFV29847.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 362

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 52/193 (26%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE      +   
Sbjct: 11  KRVLVGMSGGIDSTATCLMLRE--QGYEIVGLTMWVW----------GDEPSEARQLAQS 58

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   + +  +      +   R+ R             + +++E A  ++   I 
Sbjct: 59  MGIEHYVADERKAFREVIVRNFIDEYRQGRTPNPCVMCNPLFKFRILTEWADRLDCRYIA 118

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R     G       D    D + ++ R           P    
Sbjct: 119 TGH------------YTRLEERNGKIYIVAGDDEKKDQSYFLWRLGQDVLRRCLFPLGTY 166

Query: 173 RREDIRSFLLQRN 185
            +  +R +L  + 
Sbjct: 167 TKLQVRDYLRGKG 179


>gi|269926148|ref|YP_003322771.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789808|gb|ACZ41949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 355

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 64/241 (26%), Gaps = 60/241 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------- 72
           A ++VA+SGG DS      L     D          I V+  LR  +K++ +        
Sbjct: 2   ATVVVAMSGGVDSSVAAAMLRDQGYD---------VIGVN--LRLYSKEDSQAYSLNKQC 50

Query: 73  --------VSDVCSRLRIAH---------------SVVSWKNSKPQTGLMAAA-REARYA 108
                      VC +L I                   VS            A     ++ 
Sbjct: 51  CTLDSMRDAEAVCRKLGIPFYALNMEREFTRDVVDYFVSEYLQGKTPNPCLACNAHIKFH 110

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD------TILYDLN 162
            + E A  + A  I T H          +R      +   G+    D       +     
Sbjct: 111 HLFERAMALGADYIATGHYAR-------LRRTESGVKLLTGVDAAKDQSYTLYMLSQREL 163

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-----RVRVRRFVRDIDLHALY 217
                P     + + R    +  +     P + D  F      R  VRR     +     
Sbjct: 164 ERTLLPIGEQTKAETRELARKYGLVTANKPESQDICFIPSGDYRAFVRRLAPHAESPGPI 223

Query: 218 L 218
           +
Sbjct: 224 V 224


>gi|326203773|ref|ZP_08193636.1| asparagine synthase [Clostridium papyrosolvens DSM 2782]
 gi|325986213|gb|EGD47046.1| asparagine synthase [Clostridium papyrosolvens DSM 2782]
          Length = 271

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 61/198 (30%), Gaps = 44/198 (22%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             ++ ++  ++SL   A   VA SGG DS  LL   + VL           A++      
Sbjct: 6   DKLDFLKNNIKSLGSAA---VAFSGGVDSSFLLKVAYDVLGK------DVVAVTAH---- 52

Query: 64  ETA---KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHA 114
            ++   + E+    +  +   I H ++  +    +             +   Y  I   A
Sbjct: 53  -SSTYPEREMNEAKEFTASFGIRHRIIDSEELDVEGFSDNPVNRCYLCKNELYDKIQTVA 111

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--C 172
           K  N   I+     DD                G    G+     +     +  P      
Sbjct: 112 KEENVKHILEGSNHDDL---------------GDYRPGLQAVSEHG----VLSPLKDALL 152

Query: 173 RREDIRSFLLQRNISWCE 190
            +++IR    +  +   +
Sbjct: 153 TKDEIRFLSKEMGLKSWD 170


>gi|226325767|ref|ZP_03801285.1| hypothetical protein COPCOM_03580 [Coprococcus comes ATCC 27758]
 gi|225205891|gb|EEG88245.1| hypothetical protein COPCOM_03580 [Coprococcus comes ATCC 27758]
          Length = 515

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 210 IREKVGDGRVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKNEGDEVE 263

Query: 72  YV 73
            V
Sbjct: 264 AV 265


>gi|217964341|ref|YP_002350019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HCC23]
 gi|254811452|sp|B8DDZ8|MNMA_LISMH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|217333611|gb|ACK39405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes HCC23]
 gi|307571093|emb|CAR84272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Listeria monocytogenes L99]
          Length = 371

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADFVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGAM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIAKKAGLA 189


>gi|70726299|ref|YP_253213.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus haemolyticus
           JCSC1435]
 gi|123660380|sp|Q4L6W8|MNMA_STAHJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|68447023|dbj|BAE04607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 370

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHVLKDQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIRRHDDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +++++
Sbjct: 173 IDKKEVRKIAEEQDLA 188


>gi|296435803|gb|ADH17977.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9768]
 gi|296437663|gb|ADH19824.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11074]
 gi|297140162|gb|ADH96920.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9301]
          Length = 358

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 63/204 (30%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RET-----AKDE 69
           ++VA+SGG DS  +   L      +  G+           L       ++      A  +
Sbjct: 5   VIVAMSGGVDSSVVAYLL------KKQGEYNVV------GLFMKNWGEQDENGECTATKD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEH 113
            R V  +  +L I +  VS+     +      L   A            RE ++ L+ + 
Sbjct: 53  FRDVERIAEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKK 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNL 163
            + +    + T H              R     G GLS   D              D   
Sbjct: 113 VRELKGDFLATGH------------YCRG-GADGTGLSRGIDPNKDQSYFLCGTPKDALS 159

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + ++R    +  ++
Sbjct: 160 NVLFPLGGMYKTEVRRIAQEAGLA 183


>gi|296875545|ref|ZP_06899617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296433469|gb|EFH19244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 373

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRP 168
            T+ A  + T H    Q+   E   +   R      ++   LS +    L         P
Sbjct: 117 MTLGADYVATGHYA--QVVRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R    +  ++
Sbjct: 171 LGHLEKPEVRRLAEEAGLA 189


>gi|255311088|ref|ZP_05353658.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276]
          Length = 358

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 63/204 (30%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RET-----AKDE 69
           ++VA+SGG DS  +   L      +  G+           L       ++      A  +
Sbjct: 5   VIVAMSGGVDSSVVAYLL------KKQGEYNVV------GLFMKNWGEQDENGECTATKD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEH 113
            R V  +  +L I +  VS+     +      L   A            RE ++ L+ + 
Sbjct: 53  FRDVERIAEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKK 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNL 163
            + +    + T H              R     G GLS   D              D   
Sbjct: 113 VRELKGDFLATGH------------YCRG-GADGTGLSRGIDPNKDQSYFLCGTPKDALS 159

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + ++R    +  ++
Sbjct: 160 NVLFPLGGMYKTEVRRIAQEAGLA 183


>gi|15605008|ref|NP_219792.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis
           D/UW-3/CX]
 gi|237804632|ref|YP_002888786.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255317389|ref|ZP_05358635.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276s]
 gi|6647880|sp|O84289|MNMA_CHLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3328701|gb|AAC67880.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|231272932|emb|CAX09843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436728|gb|ADH18898.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11222]
 gi|297748416|gb|ADI50962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis D-EC]
 gi|297749296|gb|ADI51974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis D-LC]
          Length = 358

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 63/204 (30%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RET-----AKDE 69
           ++VA+SGG DS  +   L      +  G+           L       ++      A  +
Sbjct: 5   VIVAMSGGVDSSVVAYLL------KKQGEYNVV------GLFMKNWGEQDENGECTATKD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEH 113
            R V  +  +L I +  VS+     +      L   A            RE ++ L+ + 
Sbjct: 53  FRDVERIAEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKK 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNL 163
            + +    + T H              R     G GLS   D              D   
Sbjct: 113 VRELKGDFLATGH------------YCRG-GADGTGLSRGIDPNKDQSYFLCGTPKDALS 159

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + ++R    +  ++
Sbjct: 160 NVLFPLGGMYKTEVRRIAQEAGLA 183


>gi|90422506|ref|YP_530876.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           BisB18]
 gi|90104520|gb|ABD86557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris BisB18]
          Length = 404

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 46/210 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        I+VA+SGG DS      L S   D     ++      DH     R+    A
Sbjct: 11  LEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLY----DHGAAIHRKGACCA 66

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 67  GQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSIKFRDL 126

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYD 160
              A+ + A+ + T H              R  A+    L    D              D
Sbjct: 127 LSTARELGASALATGHYVS----------SRRLADGSRALVCASDADRDQSYFLFATTRD 176

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCE 190
              ++  P     +   R    +  +S  +
Sbjct: 177 QLDYLRFPLGDMTKPQTRELARKFGLSVAD 206


>gi|319405239|emb|CBI78844.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella sp. AR 15-3]
          Length = 409

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 49/203 (24%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
              + I+VA+SGG DS  +   L     D     ++      DH     R     A  ++
Sbjct: 12  PENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLY----DHGAATHRVGACCAGQDI 67

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL------------------ISE 112
                V   L + H ++ ++    +  +   A    YA                   +  
Sbjct: 68  EDARRVAETLGVPHYILDYEERFREAVINPFAES--YAHGETPIPCVACNQTVKFADLLT 125

Query: 113 HAKTINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
            A  + A  + T H                    RS     ++   L       +     
Sbjct: 126 TAYELGADALATGHYIRSRLHGAHR------ALFRSLDADRDQSYFLFATTQEQI----D 175

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
           ++  P     +E +R    +  +
Sbjct: 176 YLRFPLGDLSKEHVREIAAEMGL 198


>gi|314936263|ref|ZP_07843610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313654882|gb|EFS18627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 370

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             ++D+R    +++++
Sbjct: 173 IEKKDVRKIAEEQDLA 188


>gi|227534132|ref|ZP_03964181.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188239|gb|EEI68306.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 517

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 63/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R+ V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR   A   +
Sbjct: 216 IRAEVGDKRVLLGLSGGVDSSVVGVLLHKAI------GTQLTSIFVDHGLLRKGEADQVM 269

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
             +     +  +    V+ K+           P+       R+       E AK      
Sbjct: 270 ESLK---GKFGLNIIKVNAKDRFLGDLKGVTDPEKKRKIIGRDFIEVFNEEAAKLNGIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  DL   +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVVE------SGTDTAQTIKSHHNVGGLPEDLKFKLIEPLNKLFKDEVRELG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGMPH 387


>gi|116495445|ref|YP_807179.1| GMP synthase [Lactobacillus casei ATCC 334]
 gi|191638913|ref|YP_001988079.1| GMP synthase [Lactobacillus casei BL23]
 gi|239629831|ref|ZP_04672862.1| GMP synthase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066953|ref|YP_003788976.1| GMP synthase [Lactobacillus casei str. Zhang]
 gi|122263143|sp|Q036Y5|GUAA_LACC3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739637|sp|B3W952|GUAA_LACCB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116105595|gb|ABJ70737.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus casei ATCC 334]
 gi|190713215|emb|CAQ67221.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Lactobacillus casei BL23]
 gi|239527443|gb|EEQ66444.1| GMP synthase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439360|gb|ADK19126.1| GMP synthase [Lactobacillus casei str. Zhang]
 gi|327382966|gb|AEA54442.1| GMP synthase, large subunit [Lactobacillus casei LC2W]
 gi|327386150|gb|AEA57624.1| GMP synthase, large subunit [Lactobacillus casei BD-II]
          Length = 517

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 63/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R+ V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR   A   +
Sbjct: 216 IRAEVGDKRVLLGLSGGVDSSVVGVLLHKAI------GTQLTSIFVDHGLLRKGEADQVM 269

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
             +     +  +    V+ K+           P+       R+       E AK      
Sbjct: 270 ESLK---GKFGLNIIKVNAKDRFLGDLKGVTDPEKKRKIIGRDFIEVFNEEAAKLNGIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  DL   +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVVE------SGTDTAQTIKSHHNVGGLPEDLKFKLIEPLNKLFKDEVRELG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGMPH 387


>gi|332299348|ref|YP_004441269.1| exsB protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332176411|gb|AEE12101.1| exsB protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 217

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 64/189 (33%), Gaps = 39/189 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+A SGG DS  LL           + +    A+  D+   +    E+     +C  L I
Sbjct: 5   LIAHSGGVDSTTLLY---------EYREEVACAVGFDYG-SKHNARELAAAKAICRELDI 54

Query: 83  AHSVVS-------WKNSKPQTGLMAA-----AREAR-----------YALISEHAKTINA 119
            + ++        +++    +G             R            ++++  A++ + 
Sbjct: 55  PYLIIPLAFIEEYFRSDLLLSGGEMQLGDYSEENMRSTVVPFRNGIMLSVLAGLAESRDL 114

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++ A+ F D          R+   K MG +    T      + +  P+    + +I +
Sbjct: 115 QQVLIANHFGDHA---IYPDCRESFVKPMGEAITAGTS---NGVKLVAPYTALTKAEIVA 168

Query: 180 FLLQRNISW 188
              +  + +
Sbjct: 169 RGTRLGVPY 177


>gi|330958166|gb|EGH58426.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 366

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDTDGHTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           +  +R+   +  ++
Sbjct: 170 KPQVRAIAEKHGLA 183


>gi|330889667|gb|EGH22328.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 366

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|330875781|gb|EGH09930.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 366

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|284931128|gb|ADC31066.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase,
           tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum
           str. F]
          Length = 657

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 41/212 (19%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAI--SV 58
           ++ FF +       ++VA+SGG DS      L                  + F  +    
Sbjct: 277 ALSFFHKQ--EKPRVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFELLSDHA 334

Query: 59  DHCLRE-TAKDEVRYVSDVCSRLRIAHS---------------VVSWKNSKPQTGLMAAA 102
           D  ++   AK +      +C +L+I                  V+               
Sbjct: 335 DDQIQGCDAKQDYEDAQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTPNPDVLC 394

Query: 103 REA-RYALISEHAKTI--NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMC 154
            +  ++       +    N   I   H     T DD  E   + ++    ++   L+ + 
Sbjct: 395 NQFGKFGWFINALRKQFGNNIKIAFGHYAKLITKDD--EVFLVHTKDHNKDQTYFLTMLK 452

Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
              L +    I  P     +  +R    Q N+
Sbjct: 453 KEQLKN----IIFPLSELDKPTVREIAKQANL 480


>gi|331229244|ref|XP_003327288.1| GMP synthase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309306278|gb|EFP82869.1| GMP synthase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 553

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 43/220 (19%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I+     +RS+V P   ++ AVSGG DS      ++  +  R      F AI VD+  
Sbjct: 226 TFIDKEIARIRSVVGPDDQVIGAVSGGVDSSVAAKLMNEAIGHR------FHAIMVDNGL 279

Query: 62  LRETAKDEVRYVSDVCS-RLRIAHSVVSW---------KNSKPQTG-----------LMA 100
           LR    DE + V  +    L +  +VV               P+T              A
Sbjct: 280 LRM---DEAQQVQQMLKVDLGVNLTVVDASQTFLDVLKDVEDPETKRKLIGNTFIHVFEA 336

Query: 101 AAREARYALISEHAKTINAT--LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
            A        S+  KT   T   ++    + D +E++  +      +    + G+ D   
Sbjct: 337 EAARIEAQQASQATKTHQGTIKFLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLD--- 393

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
            ++ L +  P     ++++R+     +I     PSN  +R
Sbjct: 394 -NMKLKLIEPLRELFKDEVRALGKLLHI-----PSNLTNR 427


>gi|205822138|sp|Q21AM9|MNMA_RHOPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 400

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 46/210 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        I+VA+SGG DS      L S   D     ++      DH     R+    A
Sbjct: 7   LEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLY----DHGAAIHRKGACCA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 63  GQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSIKFRDL 122

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYD 160
              A+ + A+ + T H              R  A+    L    D              D
Sbjct: 123 LSTARELGASALATGHYVS----------SRRLADGSRALVCASDADRDQSYFLFATTRD 172

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCE 190
              ++  P     +   R    +  +S  +
Sbjct: 173 QLDYLRFPLGDMTKPQTRELARKFGLSVAD 202


>gi|188586399|ref|YP_001917944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|205816905|sp|B2A5K1|MNMA_NATTJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|179351086|gb|ACB85356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 368

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 61/206 (29%), Gaps = 49/206 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-------- 72
            +LVA+SGG DS    + L     +     ++          RE   DE  Y        
Sbjct: 6   RVLVAMSGGVDSSVAALMLKEQGYEVIGAHMRIW-------YREE--DEELYEQNVKGCC 56

Query: 73  -------VSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYAL 109
                     V  ++ I   V+++K                         A  R  ++  
Sbjct: 57  SLAAVHDAKRVADKIGIPFYVLNFKEPFYDWVVKNFIDEYLQGRTPNPCIACNRFIKWEE 116

Query: 110 ISEHAKTINATLIMTAHTFD---DQLET--VYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
             + A  +    I T H      D L+   +  R +    ++   LS +    L      
Sbjct: 117 FLKRAMALECDYIATGHYSKIVYDNLKNRYLLYRGKDKTKDQSYMLSQLTQEQLART--- 173

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCE 190
              P     +ED+R+   Q  +   +
Sbjct: 174 -LFPLGDYYKEDVRNIAEQNELGVAD 198


>gi|85375520|ref|YP_459582.1| tRNA-specific 2-thiouridylase MnmA [Erythrobacter litoralis
           HTCC2594]
 gi|122543295|sp|Q2N6A6|MNMA_ERYLH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84788603|gb|ABC64785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter litoralis HTCC2594]
          Length = 384

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 74/212 (34%), Gaps = 42/212 (19%)

Query: 5   PIESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           P ++   F   L  PA    I+VA+SGG DS  +    H+  ++     ++      D+ 
Sbjct: 10  PADAADMF--DLPRPAAESRIVVAMSGGVDSSVVAALAHASGAEVIGITLQLY----DYG 63

Query: 62  L---RET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA---------- 105
               R+    A D+++    V  RL IAH V   +++  +  +   A +           
Sbjct: 64  AATGRKGACCAGDDIQDARAVADRLGIAHYVFDHESAFREDVVEQFADDYLSGRTPVPCI 123

Query: 106 ------RYALISEHAKTINATLIMTAHTFDDQL-----ETVYMRSQRDYAEKGMGLSGMC 154
                 ++  +   A+ + A  + T H           E    R+     ++   L G  
Sbjct: 124 RCNMGPKFTDLLRMARELGADCLATGHYVRRVAGEHGPE--LHRALDPARDQSYFLYGTT 181

Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           +T L     ++  P     +  +R       +
Sbjct: 182 ETQL----DFLRFPLGDLPKTAVRELAEAAGL 209


>gi|53804157|ref|YP_114223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylococcus capsulatus str. Bath]
 gi|81681831|sp|Q607H5|MNMA_METCA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|53757918|gb|AAU92209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylococcus capsulatus str. Bath]
          Length = 371

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 32/190 (16%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
             H++V +SGG DS    + L       S   +K           E        A  +  
Sbjct: 2   KPHVVVGMSGGVDSSVTALLLLRQGYRVSGLFMK--------NWEEDDGTEYCTAAQDFA 53

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAK 115
               VC RL +    V++             +  R  R             +    ++A+
Sbjct: 54  DAKQVCERLGVELHTVNFAAEYWDEVFEVFLSEYRAGRTPNPDILCNKQIKFRAFLDYAE 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            + A LI   H      E   ++  +     G   S    T+  +       P    R+ 
Sbjct: 114 DLGADLIAMGHYARVAEEEGRLQLLKGCDP-GKDQSYFLYTLQQEQLARTLFPLGGLRKT 172

Query: 176 DIRSFLLQRN 185
           ++R+      
Sbjct: 173 EVRALAAGAG 182


>gi|238920209|ref|YP_002933724.1| tRNA-specific 2-thiouridylase MnmA [Edwardsiella ictaluri 93-146]
 gi|259495829|sp|C5B8B9|MNMA_EDWI9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|238869778|gb|ACR69489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Edwardsiella ictaluri 93-146]
          Length = 367

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 39/195 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-------VRY 72
             ++V +SGG DS      L       +   +K           E   DE       +  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMK--------NWEEDDSDEYCSAATDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHAK 115
              VC RL I    V++             +E R                  A +   A+
Sbjct: 59  AQAVCDRLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAE 118

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A  I T H     D    T  +R      ++   L  +    +         P    
Sbjct: 119 DLGADYIATGHYVRRRDINGTTQLLRGVDANKDQSYFLYTLSHQQVAQS----LFPVGEL 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    Q +++
Sbjct: 175 EKPEVRRIAAQLDLA 189


>gi|212696912|ref|ZP_03305040.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676202|gb|EEB35809.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 369

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 65/190 (34%), Gaps = 40/190 (21%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-----DEVRY--VSDVC 77
            VSGG DS    + L     D S   +K           E  +      EV Y     VC
Sbjct: 14  GVSGGVDSSVAALLLKEEGYDVSGIFMK--------NWDEEDENGVCTAEVDYEDAVKVC 65

Query: 78  SRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTINATL 121
           +++ I +  ++++                  R          E ++    ++AK + A  
Sbjct: 66  NQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADY 125

Query: 122 IMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           + T H      +D  ET  +R      ++   LS +    + D    +  P     ++++
Sbjct: 126 LATGHYARVDRED-GETKMLRGIDSNKDQTYFLSQLSQDQIKD----VLFPVGNLDKKEV 180

Query: 178 RSFLLQRNIS 187
           R    + N++
Sbjct: 181 RKIAKENNLA 190


>gi|254785838|ref|YP_003073267.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901]
 gi|237686421|gb|ACR13685.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901]
          Length = 367

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 46/196 (23%)

Query: 21  HILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
            ++V +SGG DS    LL+       +  F K             E   D   Y      
Sbjct: 11  KVIVGMSGGVDSSVSALLLLQQGYQVEGLFMK----------NWNE--DDGTEYCTAMTD 58

Query: 74  ----SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
               ++VC +L I     +     W N          A           RE ++ +  ++
Sbjct: 59  LLDAANVCQKLGIPLHTANFATQYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKVFLDY 118

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H   T +   +T   +      ++   L  + +   +   L+   P  
Sbjct: 119 AEQLGANYIATGHYARTRNKAGQTQLCKGLDGNKDQSYFLHAVEEKA-FAKTLF---PIG 174

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R      ++
Sbjct: 175 ELEKPRVRELAEAHDL 190


>gi|320352192|ref|YP_004193531.1| GMP synthase [Desulfobulbus propionicus DSM 2032]
 gi|320120694|gb|ADW16240.1| GMP synthase (glutamine-hydrolyzing) [Desulfobulbus propionicus DSM
           2032]
          Length = 516

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             S I+S    +R+ V    ++ A+SGG DS  +   +H  + D      + + I V++ 
Sbjct: 203 MHSFIDSTVAEIRAKVGSDRVICALSGGVDSSVVAALVHRAIGD------QLTCIHVNNG 256

Query: 62  L-R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYAL--- 109
           L R   ++  +R+  +     + + +V+    ++                +   Y     
Sbjct: 257 LMRTGESESVLRFFRE-----KTSLTVIDVDATEFFLNALDGVADPEEKRKRIGYGFIEI 311

Query: 110 ISEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
               AK +     +     + D +E+V  R      +  +        +   + L +  P
Sbjct: 312 FEAEAKKLGKVRYLAQGTLYPDVIESVVFR-----GKAPIKSHHNVGGLPERMQLDLIEP 366

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R   L+  + 
Sbjct: 367 LRELFKDEVRELGLELGLP 385


>gi|119944723|ref|YP_942403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas ingrahamii 37]
 gi|166235075|sp|A1STI9|MNMA_PSYIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119863327|gb|ABM02804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas ingrahamii 37]
          Length = 367

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 45/196 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            ++V +SGG DS      L           + +                    A  ++  
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYLVEGLFMKNWEEDDTDQYCA---------AAQDLED 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHAK 115
              VC +L I    +++              E +                  A +   A+
Sbjct: 59  AQSVCDKLGIPLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 118

Query: 116 TINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A  I T H       D  ++   +R   +  ++   L  + +  +         P  
Sbjct: 119 DLGADYIATGHYVRRREVDGHVQ--LLRGLDNNKDQSYFLYAIGEKQIAKS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q+++
Sbjct: 173 ELEKPEVRRIAEQQDL 188


>gi|329957023|ref|ZP_08297591.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
 gi|328523780|gb|EGF50872.1| GMP synthase domain protein [Bacteroides clarus YIT 12056]
          Length = 517

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 74/194 (38%), Gaps = 25/194 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    ++  +    +++ +SGG DS    + LH  +          + I VDH  L
Sbjct: 198 SFVDTTVAELKGQLGNDRVILGLSGGVDSSVAAVLLHRAIGK------NLTCIFVDHGLL 251

Query: 63  RETAKDEVRYV-SDV-CSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEH 113
           R+    E R V  D  C  L +     S K        ++P+       R+      +E 
Sbjct: 252 RKN---EFRNVMRDYECLGLNVIGVDASAKFFKDLEGVTEPEQKRKIIGRDFIEVFDAEA 308

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +A  +     + D++E+  +       +    + G+ +    ++NL +  P     
Sbjct: 309 HKITDARWLAQGTIYPDRIES--LNITGKTIKSHHNVGGLPE----EMNLRLCEPLQWLF 362

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 363 KDEVRRVGRELGMP 376


>gi|269139398|ref|YP_003296099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda EIB202]
 gi|267985059|gb|ACY84888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda EIB202]
 gi|304559294|gb|ADM41958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda FL6-60]
          Length = 367

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 55/195 (28%), Gaps = 39/195 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-------VRY 72
             ++V +SGG DS      L       +   +K           E   DE       +  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMK--------NWEEDDSDEYCSAATDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHAK 115
              VC RL I    V++             +E R                  A +   A+
Sbjct: 59  AQAVCDRLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAE 118

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A  I T H     D    T  +R      ++   L  +    +         P    
Sbjct: 119 DLGADYIATGHYVRRRDINGTTQLLRGVDANKDQSYFLYTLSHQQVAQS----LFPVGEL 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    Q +++
Sbjct: 175 EKPEVRRIAAQLDLA 189


>gi|225174584|ref|ZP_03728582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169711|gb|EEG78507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 366

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 50/231 (21%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--- 72
           +     +LVA+SGG DS      L     +     ++              +DE ++   
Sbjct: 1   MKKNNRVLVAMSGGVDSSLCAALLKEQGYEAIGVTMRLWV-------SPDFEDEAKHSGR 53

Query: 73  ----------VSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAA-REAR 106
                        V  ++ +   V+++K S                       A  R  +
Sbjct: 54  GCCSLSAVDDARRVADKMEMPFYVLNFKESFRTQVVDYFVDEYRRGRTPNPCIACNRYLK 113

Query: 107 YALISEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           + L+ + A  + A  + T H      D+ LE    R ++    +      + +     L 
Sbjct: 114 FDLLLKKAFELEAWYVATGHYARVEYDESLERF--RLKKAADARKDQTYTLYNLTQKQLA 171

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFERVRVRRF 207
             +  P     + ++R    +  ++  + P +       DD ++R  +R  
Sbjct: 172 HTLF-PLGGFLKSEVREMAAKYGLAVADKPDSQEICFIPDDDYKR-FLREE 220


>gi|20095126|ref|NP_614973.1| ATPase [Methanopyrus kandleri AV19]
 gi|19888424|gb|AAM02903.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 294

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 31/137 (22%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
              E VR   ++L     +LVAVSGG DS+  L     +  +         A++VD   L
Sbjct: 39  ELREKVR---KALENSEKVLVAVSGGLDSLAALGLALRICDE-------VVALTVDTGAL 88

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVV------------SWKNSKPQTGLMAAAREARYAL 109
              A    R +  +  R+  I   ++                ++   G  +     RY  
Sbjct: 89  HPEA--WRRII--LARRMSGIEWEIIGDQKPFLKLFEERLTRAESPCGPCSRMITRRY-- 142

Query: 110 ISEHAKTINATLIMTAH 126
               A+ +    I+T H
Sbjct: 143 -ERRARELGVDAIVTGH 158


>gi|307293549|ref|ZP_07573393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobium chlorophenolicum L-1]
 gi|306879700|gb|EFN10917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingobium chlorophenolicum L-1]
          Length = 376

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 61/202 (30%), Gaps = 51/202 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------RETAKDEVRYV 73
             I+VA+SGG DS  +        ++     ++      DH           A  ++R  
Sbjct: 22  RRIVVAMSGGVDSSVVAALAARTGAETIGVTLQLY----DHGAAVGRTGSCCAGQDIRDA 77

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL------------------ISEHAK 115
             V  R+ IAH V  +++   ++ +   A E  Y                    + + A+
Sbjct: 78  RAVADRIGIAHYVFDYESRFRESVIADFADE--YMAGRTPIPCVKCNMGVKFTDLFQIAR 135

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLWI 165
            + A  + T H             +R    +G  L    D                  ++
Sbjct: 136 DLGADCLATGH-----------YVRRVEGPQGAELHRAADPARDQSYFLFATTQAQLDYL 184

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     +  +R    +  +S
Sbjct: 185 RFPLGGLPKPQVREIAAELGLS 206


>gi|169829330|ref|YP_001699488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus sphaericus C3-41]
 gi|205816875|sp|B1HUL3|MNMA_LYSSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168993818|gb|ACA41358.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus sphaericus C3-41]
          Length = 374

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 65/194 (33%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 11  RVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDDTDENGVCT--------ATEDYDDV 62

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYALISEHAKTI 117
             VC+++ I +  V+++           L    A R          E ++    EHA ++
Sbjct: 63  IKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMSL 122

Query: 118 NATLIMTAHTFD-DQL---ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H    D+    E   +R   +  ++   L+ +    L      +  P     
Sbjct: 123 GADYLATGHYARIDRSGDGEVKMLRGVDNNKDQTYFLNQLSQEQLA----HVMFPIGDIE 178

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  ++
Sbjct: 179 KKEVRKIAEEAGLA 192


>gi|167034615|ref|YP_001669846.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida GB-1]
 gi|189040506|sp|B0KMQ6|MNMA_PSEPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166861103|gb|ABY99510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida GB-1]
          Length = 374

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 63/201 (31%), Gaps = 46/201 (22%)

Query: 17  VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
                ++V +SGG DS    LL+       +  F K             E        A+
Sbjct: 9   PAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMK----------NWEEDDGTEYCTAR 58

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
           +++     VC R+ I     +     W N          A           RE ++    
Sbjct: 59  EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFL 118

Query: 112 EHAKTINATLIMTAH---TFD--DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           ++A ++ A LI T H     D  D  E   ++      ++   L  +    +        
Sbjct: 119 DYALSLGADLIATGHYVRRRDTGDLTE--LLKGLDPNKDQSYFLHAVGGKEIART----L 172

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + ++R+   +  ++
Sbjct: 173 FPVGELEKPEVRAIAEKHGLA 193


>gi|71735842|ref|YP_275272.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|123635957|sp|Q48H61|MNMA_PSE14 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71556395|gb|AAZ35606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 376

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 12  KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 63

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 64  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 123

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 124 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 179

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 180 KPEVRAIAEKHGLA 193


>gi|18977888|ref|NP_579245.1| GMP synthase subunit B [Pyrococcus furiosus DSM 3638]
 gi|23821600|sp|Q8U0R8|GUAAB_PYRFU RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|18893648|gb|AAL81640.1| GMP synthase [Pyrococcus furiosus DSM 3638]
          Length = 313

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 102/310 (32%), Gaps = 51/310 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E +R  +R  V  +  ++A+SGG DS    +  H  + DR        A+ V+   LR+ 
Sbjct: 14  EKIRE-IRETVGDSKAIIALSGGVDSSTAAVLAHRAIGDR------LHAVFVNTGFLRKG 66

Query: 66  AKDEVRYVSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYAL---ISEHAKT 116
              E  +V              +      +   K  T      +           E AK 
Sbjct: 67  ---EPEFVIKTFRDEFGMNLHYVDAQDRFFAALKGVTDPEEKRKIIGRVFIEVFEEVAKD 123

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I A  ++      D +E       +   +    + G+ + +    NL I  P     +++
Sbjct: 124 IGAEYLIQGTIAPDWIE------SQGKIKSHHNVGGLPEKL----NLKIIEPLRDLYKDE 173

Query: 177 IRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLR 227
           +R    +  +         +  + R         VRV   + ++    + +  +    + 
Sbjct: 174 VRQLAKELGLP--------EKIYNRMPFPGPGLAVRV---IGEVTPEKIRIVREANAIVE 222

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            ++  A       +  +     + +  DI     T+   ++     +    +++P +  +
Sbjct: 223 EEIEKAGLRPWQAFAVLLGVKTVGVQGDIRAYKETIAVRIVESVDGMTANAMNVP-WEVL 281

Query: 288 ERVMLFLKSG 297
           +R+   + S 
Sbjct: 282 QRIAFRITSE 291


>gi|328552283|gb|AEB22775.1| GMP synthase [Bacillus amyloliquefaciens TA208]
          Length = 513

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 203 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 257 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      ++    + D +E            + +        +  D+   +  P    
Sbjct: 314 AVKLKGIDYLVQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 368 FKDEVRALGTELGIP 382


>gi|331270376|ref|YP_004396868.1| GMP synthase, large subunit [Clostridium botulinum BKT015925]
 gi|329126926|gb|AEB76871.1| GMP synthase, large subunit [Clostridium botulinum BKT015925]
          Length = 517

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 25/192 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++  ++ LV    +L A+SGG DS    + +H  +        + + + VDH  LR+ 
Sbjct: 211 EKIK-AIKELVGDKKVLCALSGGVDSSVAAVLVHKAIGK------QLTCVFVDHGLLRKD 263

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
             D+V  +     +  +    V+            S P+T       E       E  K 
Sbjct: 264 EGDQVEAIFK--KQFDMNLIRVNAAERFLGKLKGVSDPETKRKIIGEEFIRVFEEEAGKL 321

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E              +        +  D+   +  P     +++
Sbjct: 322 GQIDFLVQGTIYPDVVE------SGTNTSATIKSHHNVGGLPEDMQFSLIEPLRELFKDE 375

Query: 177 IRSFLLQRNISW 188
           +R+   +  I  
Sbjct: 376 VRAVGEELGIPH 387


>gi|329962136|ref|ZP_08300147.1| GMP synthase domain protein [Bacteroides fluxus YIT 12057]
 gi|328530784|gb|EGF57642.1| GMP synthase domain protein [Bacteroides fluxus YIT 12057]
          Length = 517

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 75/194 (38%), Gaps = 25/194 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    ++  +    +++ +SGG DS    + LH  +          + I VDH  L
Sbjct: 198 SFVDTTVAELKEQLGNDRVILGLSGGVDSSVAAVLLHRAIGK------NLTCIFVDHGLL 251

Query: 63  RETAKDEVRYVSD--VCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEH 113
           R   KDE R V +   C  L +     S K        ++P+       R+      +E 
Sbjct: 252 R---KDEFRNVMNDYECLGLNVIGVDASEKFFKDLEGVTEPEQKRKIIGRDFIEVFDAEA 308

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +A  +     + D++E+  +       +    + G+ +    ++NL +  P     
Sbjct: 309 HKITDARWLAQGTIYPDRIES--LNITGKTIKSHHNVGGLPE----EMNLRLCEPLQWLF 362

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 363 KDEVRRVGRELGMP 376


>gi|325263320|ref|ZP_08130055.1| GMP synthase, C- domain protein [Clostridium sp. D5]
 gi|324031713|gb|EGB92993.1| GMP synthase, C- domain protein [Clostridium sp. D5]
          Length = 430

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     V+  V    +L+A+SGG DS  +   L   +        +   + V+H 
Sbjct: 118 MKNFIEDQVELVKRQVGDKKVLLALSGGVDSSVVAALLIKAIGG------QLVCVHVNHG 171

Query: 62  L 62
           L
Sbjct: 172 L 172


>gi|110825739|sp|Q58742|QUEC_METJA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
          Length = 232

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS  + +    +         + +AI+ ++  R  AK E+     +C  L I H 
Sbjct: 7  LSGGLDSTVVTLIAKDL-------GYEVTAITFNYGQRA-AKREINSAKKICEILGIEHI 58

Query: 86 VVS 88
          VV 
Sbjct: 59 VVD 61


>gi|15669538|ref|NP_248349.1| ExsB [Methanocaldococcus jannaschii DSM 2661]
 gi|1591989|gb|AAB99356.1| ExsB [Methanocaldococcus jannaschii DSM 2661]
          Length = 235

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS  + +    +         + +AI+ ++  R  AK E+     +C  L I H 
Sbjct: 10 LSGGLDSTVVTLIAKDL-------GYEVTAITFNYGQRA-AKREINSAKKICEILGIEHI 61

Query: 86 VVS 88
          VV 
Sbjct: 62 VVD 64


>gi|313906605|ref|ZP_07839930.1| GMP synthase, large subunit [Eubacterium cellulosolvens 6]
 gi|313468566|gb|EFR63943.1| GMP synthase, large subunit [Eubacterium cellulosolvens 6]
          Length = 518

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 20/186 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  +    +L+A+SGG DS      L   +          + + VDH  LR+   DEV
Sbjct: 212 ALREKIGDGKVLLALSGGVDSSVAAGLLAKAVGK------NLTCVFVDHGLLRKDEGDEV 265

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKTINA-TL 121
             V     +  +    V+ +    +        E +          +  E AK I A   
Sbjct: 266 EAVFGPSGQFDLNFIRVNAQERYYKKLAGVTEPEQKRKIIGEEFIRVFEEEAKKIGAVDY 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+     +    +    + G+ + + +     I  P     ++++R   
Sbjct: 326 LAQGTIYPDVVESGL-GGESATIKSHHNVGGLPEFVDFK---EIVEPLRDLFKDEVRKVG 381

Query: 182 LQRNIS 187
           L   I 
Sbjct: 382 LHLGIP 387


>gi|297181386|gb|ADI17576.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase
           domain-protein [uncultured alpha proteobacterium
           HF0130_06E21]
          Length = 454

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 64/221 (28%), Gaps = 59/221 (26%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
                ++VA+SGG DS      LH    D     ++      DH          R+    
Sbjct: 84  PAETRVVVAMSGGVDSSVTAALLHEQGYDVVGITLQLY----DHG-----AATARF-KAC 133

Query: 77  CSRLRI------------AHSVVSWKNSKPQTGLMAAARE----------------ARYA 108
           C+   I             H V+ +++   +  +   A                   ++ 
Sbjct: 134 CAGQDIYDAYRVADMIGFPHYVLDYESRFREDVIENFADAYVRGETPIPCVTCNQTVKFR 193

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL---------- 158
            +   A+ + A  + T H             +R+    G  L    D             
Sbjct: 194 DLVATARDLGADALATGH-----------YIRREAGPGGAELHRAVDASRDQSYFLFATT 242

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +D   ++  P     ++ +R    +  ++  E P + D  F
Sbjct: 243 HDQLDFLRFPLGDMPKDQVREHARRLGLAIAEKPDSQDICF 283


>gi|296330093|ref|ZP_06872575.1| GMP synthase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673338|ref|YP_003865010.1| GMP synthase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296152682|gb|EFG93549.1| GMP synthase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411582|gb|ADM36701.1| GMP synthase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 513

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 203 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 257 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 314 ADKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 368 FKDEVRALGTELGIP 382


>gi|291483073|dbj|BAI84148.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus subtilis subsp. natto BEST195]
          Length = 516

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 206 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 259

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 260 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 316

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 317 ADKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 371 FKDEVRALGTELGIP 385


>gi|255767161|ref|NP_388517.2| GMP synthase [Bacillus subtilis subsp. subtilis str. 168]
 gi|239938892|sp|P29727|GUAA_BACSU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225184788|emb|CAB12455.2| GMP synthetase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 513

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 203 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 257 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 314 ADKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 368 FKDEVRALGTELGIP 382


>gi|221321995|ref|ZP_03603289.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus subtilis subsp. subtilis str. SMY]
          Length = 471

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 204 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 257

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 258 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 315 ADKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 368

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 369 FKDEVRALGTELGIP 383


>gi|221312794|ref|ZP_03594599.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221317718|ref|ZP_03599012.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|2239288|gb|AAB62311.1| GMP synthetase [Bacillus subtilis]
          Length = 513

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 204 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 257

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 258 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 315 ADKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 368

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 369 FKDEVRALGTELGIP 383


>gi|303236575|ref|ZP_07323157.1| protein ExsB [Prevotella disiens FB035-09AN]
 gi|302483228|gb|EFL46241.1| protein ExsB [Prevotella disiens FB035-09AN]
          Length = 217

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 66/195 (33%), Gaps = 40/195 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I++ VSGG DS+ LL         +    I   AIS D+  +  A  E+ + +  C 
Sbjct: 2   KDSIII-VSGGLDSITLLH--------QKANTIAL-AISFDYG-QNHASKELPFAALHCK 50

Query: 79  RLRIAHSVVSWKNSKP--QTGLMAAAR---EARY------------------ALISEHAK 115
           RL I H V+  +      ++ L+  +    E  Y                  A+ +  A+
Sbjct: 51  RLGIRHIVIPLQFMHEYFKSSLLEGSEKIPEGHYEEDNMKSTVVPFRNGIMLAIAAGIAE 110

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           + +   I  A+   D          R      M  +    T     N  I   F    + 
Sbjct: 111 SHHLNRIYIANHGGDHT---IYPDCRPEFIDAMTAATQAGTF---NNTRIEAAFTNITKA 164

Query: 176 DIRSFLLQRNISWCE 190
           DI S   +  I + E
Sbjct: 165 DIVSIGTKLGIDYAE 179


>gi|288870927|ref|ZP_06115784.2| GMP synthase [Clostridium hathewayi DSM 13479]
 gi|288865377|gb|EFC97675.1| GMP synthase [Clostridium hathewayi DSM 13479]
          Length = 521

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +R  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 208 SFVESSIKSIREKVGSGKVLCALSGGVDSSVAAVMLAKAVGK------QLTCVFVDHGLL 261

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 262 RKDEGDEVEAV 272


>gi|197302721|ref|ZP_03167775.1| hypothetical protein RUMLAC_01451 [Ruminococcus lactaris ATCC
           29176]
 gi|197298303|gb|EDY32849.1| hypothetical protein RUMLAC_01451 [Ruminococcus lactaris ATCC
           29176]
          Length = 515

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 210 IREKVGDGRVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKDEGDEVE 263

Query: 72  YV 73
            V
Sbjct: 264 AV 265


>gi|108763299|ref|YP_632241.1| hypothetical protein MXAN_4063 [Myxococcus xanthus DK 1622]
 gi|108467179|gb|ABF92364.1| conserved hypothetical protein TIGR00268 [Myxococcus xanthus DK
           1622]
          Length = 298

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 60/194 (30%), Gaps = 38/194 (19%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +E +R  +R+       LVA SGG DS  +L      L DR+      SA         
Sbjct: 17  KLELMRAALRAHGSA---LVAFSGGVDSTFVLKVAVEELGDRALALTALSA--------S 65

Query: 65  TAKDEVRYVSDVCSRLRIAHSVV------SWKNSKPQTGLMAAAREARYALISEHAKTIN 118
            A +E     ++ +RL   H V+      + + +   T      +   Y +     K++ 
Sbjct: 66  VAPEEADEARELATRLGARHVVLGSNELANPQYAANPTNRCYFCKTELYDICEAQRKSLG 125

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRED 176
             +++     DD                                  +  P       +E+
Sbjct: 126 LAVVLDGFNADD-------------------FKDHRPGHKAAQEHQVVSPLAQAGLTKEE 166

Query: 177 IRSFLLQRNISWCE 190
           IR++     +   +
Sbjct: 167 IRAWSQSLGLPTWD 180


>gi|330940375|gb|EGH43479.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 366

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|313835919|gb|EFS73633.1| GMP synthase protein [Propionibacterium acnes HL037PA2]
 gi|314927235|gb|EFS91066.1| GMP synthase protein [Propionibacterium acnes HL044PA1]
 gi|314970629|gb|EFT14727.1| GMP synthase protein [Propionibacterium acnes HL037PA3]
 gi|328906134|gb|EGG25909.1| GMP synthase, large subunit [Propionibacterium sp. P08]
          Length = 517

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRKGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA--RY--ALISEHAKTINA----TL 121
             +V+   + L +A     + +         A R+   R       + AK +NA      
Sbjct: 265 DDFVAATGADLVVADESQRFLDVLTGISDPEAKRKIIGREFIRTFEDVAKRLNADQPIDF 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+             +        +  DL   +  P     ++++R+  
Sbjct: 325 LVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAVG 379

Query: 182 LQRNIS 187
           L+  + 
Sbjct: 380 LELGLP 385


>gi|295100171|emb|CBK89260.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit/GMP synthase (glutamine-hydrolyzing), N-terminal
           domain or A subunit [Eubacterium cylindroides T2-87]
          Length = 515

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V    +L A+SGG DS    + L   + +      + + + VDH  LR+   DEV
Sbjct: 209 AIREKVGDGKVLCALSGGVDSSVAAVLLSKAIGN------QLTCVFVDHGLLRKNEGDEV 262

Query: 71  RYV 73
             V
Sbjct: 263 EAV 265


>gi|319408925|emb|CBI82582.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bartonella schoenbuchensis R1]
          Length = 409

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 57/200 (28%), Gaps = 45/200 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------RETAKDEV 70
              + I+VA+SGG DS  +   L     D     ++      DH +         A  ++
Sbjct: 12  PENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLY----DHGVATHRVGSCCAGQDI 67

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHA 114
                +   L I H V+ ++    +  +                 A  +  +++ +   A
Sbjct: 68  EDARRIAETLNIPHYVLDYEERFREAVIDPFTESYTHGETPVPCVACNQTVKFSDLLATA 127

Query: 115 KTINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           + + A  + T H                    R      ++   L       +     ++
Sbjct: 128 RELGADALATGHYIRSRSCGAHR------ALFRPLDAERDQSYFLFATTQEQI----DYL 177

Query: 166 SRPFLRCRREDIRSFLLQRN 185
             P     +  +R    +  
Sbjct: 178 RFPLGDLPKARVREIAAEMG 197


>gi|254719618|ref|ZP_05181429.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. 83/13]
 gi|265984628|ref|ZP_06097363.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13]
 gi|306837544|ref|ZP_07470417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella sp. NF 2653]
 gi|264663220|gb|EEZ33481.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13]
 gi|306407370|gb|EFM63576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella sp. NF 2653]
          Length = 398

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 27/193 (13%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 12  PEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLY----DHGAAVHRAGSCCAGQDI 67

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V   L I H V+ ++    +  +   A                   ++A + + A
Sbjct: 68  EDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFADLLQAA 127

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + + A  + T H    +    +    R           +  T    ++ ++  P     +
Sbjct: 128 RDLGADALATGHYIRSRANGAHRALYRPVDTDRDQSYFLFATTQEQID-YLRFPLGHLPK 186

Query: 175 EDIRSFLLQRNIS 187
             +R    +  ++
Sbjct: 187 AQVREIAEELGLT 199


>gi|225374596|ref|ZP_03751817.1| hypothetical protein ROSEINA2194_00211 [Roseburia inulinivorans DSM
           16841]
 gi|225213548|gb|EEG95902.1| hypothetical protein ROSEINA2194_00211 [Roseburia inulinivorans DSM
           16841]
          Length = 538

 Score = 53.4 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +R  V    +L+A+SGG DS      L   +        + + + VDH  L
Sbjct: 214 SFVESTIKDIREKVGDGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLL 267

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 268 RKNEGDEVESV 278


>gi|320323780|gb|EFW79864.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327920|gb|EFW83925.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 366

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|183599450|ref|ZP_02960943.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827]
 gi|188021697|gb|EDU59737.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827]
          Length = 367

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 55/196 (28%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNW----------EEDDDEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 57  ADAQSVCDKLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R   +  ++   L  +    +         P  
Sbjct: 117 AEDLGADYIATGHYVRRRDVNGKSQLLRGLDNNKDQSYFLYTLSYAQIAKS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 173 ELEKPEVRRIAEEVGL 188


>gi|167756430|ref|ZP_02428557.1| hypothetical protein CLORAM_01963 [Clostridium ramosum DSM 1402]
 gi|167703838|gb|EDS18417.1| hypothetical protein CLORAM_01963 [Clostridium ramosum DSM 1402]
          Length = 515

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   + +      + + + VDH  L
Sbjct: 201 SFVEEQIKAIREKVGNGKVLCALSGGVDSSVAAVLLSKAIGN------QLTCVFVDHGLL 254

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 255 RKNEGDEVETV 265


>gi|317500695|ref|ZP_07958913.1| GMP synthase domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897889|gb|EFV19942.1| GMP synthase domain-containing protein [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 430

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 21/189 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           + V    R  V    +L+A+SGG DS  +   L   +        +   + V+H L R+ 
Sbjct: 124 DQVELICRQ-VGDRKVLLALSGGVDSSVVAAMLIKAIGQ------QLVCVHVNHGLMRKN 176

Query: 66  AKDEVRYVS--DVCSRLRIAHSVVSWKNSKPQTGLMAAAR-----EARYALISEHAKTIN 118
             + V  V    + + L    +   +             R     E       E  K   
Sbjct: 177 ESESVVEVFRNQLHANLIYVDATERFLGKLENVSDPEEKRKIIGGEFIRVFEEEARKLEG 236

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            K +        +  DL   +  P  +  ++++R
Sbjct: 237 IDFLGQGTIYPDIIE------SGTKTAKMVKSHHNVGGLPEDLQFELVEPLKQLFKDEVR 290

Query: 179 SFLLQRNIS 187
           +  ++  + 
Sbjct: 291 ACGIELGLP 299


>gi|294140592|ref|YP_003556570.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Shewanella violacea DSS12]
 gi|293327061|dbj|BAJ01792.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Shewanella violacea DSS12]
          Length = 376

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 33/194 (17%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDE 69
           +    ++V +SGG DS      L           +K           E        A D+
Sbjct: 9   LNNKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMK--------NWEEDDTDEYCAAADD 60

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISE 112
           ++    VC +L I    V++ +           A  +  R               A +  
Sbjct: 61  LKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEF 120

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             + ++A  I   H      ET   R  R           +  T+ ++       P    
Sbjct: 121 ADEILDADFIAMGHYVRRSDETGQSRMLRGIDGNKDQSYFLY-TLSHEQIARSLFPVGEL 179

Query: 173 RREDIRSFLLQRNI 186
            + ++R    +  +
Sbjct: 180 EKSEVREIAKEMGL 193


>gi|94237991|gb|ABF13476.2| GMP synthase/glutamine amidotransferase [Arcanobacterium pyogenes]
          Length = 521

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/204 (19%), Positives = 71/204 (34%), Gaps = 42/204 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E VR  +R  V   H +  +SGG DS      +H  + D      + + + VDH  LR+ 
Sbjct: 205 EQVRK-IREQVGDKHAICGLSGGVDSSVAAALVHKAIGD------QLTCVFVDHGLLRKG 257

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQT-----------GLMAAAR 103
             ++V  V D  + L I   VV+   S+           P+T              AA R
Sbjct: 258 EAEQV--VRDYAASLGI--RVVAVDESERFLSALDGVTDPETKRKIIGREFIRSFEAAQR 313

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
                +    A       ++    + D +E+             +        +  DL+ 
Sbjct: 314 AL---VAEAGAAGKEIKFLVQGTLYPDVVES-----GGGDGTANIKSHHNVGGLPDDLDF 365

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     ++++R+  L+  + 
Sbjct: 366 ELVEPLRDLFKDEVRAIGLELGLD 389


>gi|317122065|ref|YP_004102068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter marianensis DSM 12885]
 gi|315592045|gb|ADU51341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter marianensis DSM 12885]
          Length = 405

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 41/199 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------ 72
              +L A+SGG DS  +   L     +     ++             A+DE RY      
Sbjct: 6   KGRVLAAMSGGVDSSVMAALLRDEGYEVIGVTMQTWPAM-------AAEDEARYGGCCSL 58

Query: 73  -----VSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAREA---------RY---ALIS 111
                   V  RL I + V++ +    +  +        R           RY       
Sbjct: 59  SAIDDARRVAERLGIPYYVMNMRQDFEEKVIDYFVEEYLRGRTPNPCIACNRYIKFDEFL 118

Query: 112 EHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             A+ +    + T H      DD      +   R  A++    + +      +       
Sbjct: 119 RRAQALGCDYVATGHYAIVEYDDAAGRFVL---RKSADRRKDQTYVLYNFTQEQLARTLL 175

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P  R  + ++R       +
Sbjct: 176 PIGRFEKSEVRRLAEAYGL 194


>gi|262197371|ref|YP_003268580.1| Queuosine synthesis-like protein [Haliangium ochraceum DSM 14365]
 gi|262080718|gb|ACY16687.1| Queuosine synthesis-like protein [Haliangium ochraceum DSM 14365]
          Length = 296

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 93/278 (33%), Gaps = 48/278 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + ++++R  VR       +LVA SGG DS  LL      L       +   ++++     
Sbjct: 18  TKLDTLRGIVRGY---GRVLVAFSGGVDSAFLLKIASDELGADCHA-LTCVSVTM----- 68

Query: 64  ETAKDEVRYVSDVCSRLRIA---HSVVSWKNSKPQ-----TGLMAAAREARYALISEHAK 115
             A+ EV     +   L +A   H V S +  +P      T   A  +     +    A+
Sbjct: 69  --ARSEVEDARALGDELGLAERHHVVESNELEQPGFADNPTHRCALCKTELMDVARPLAE 126

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            +   +I      DD                G    G+         + +        + 
Sbjct: 127 QLGVEVIAIGTNIDDL---------------GDFRPGIAAAKERAARMPMVE--AGLSKA 169

Query: 176 DIRSFLLQRNISWCEDPS--------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           DIR+   Q  +   + P             +    R+RR    +D     L+   F+ LR
Sbjct: 170 DIRALSRQLGLRTWDKPQLACLSSRFPYGTKITPERLRR----VDAFEDGLRALGFRQLR 225

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLF 265
           V+ ++A+A L      +      A+   I+ +   L F
Sbjct: 226 VRFHDAIARLELDGDELPRACEPAMRAQIVALGKRLDF 263


>gi|253998326|ref|YP_003050389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. SIP3-4]
 gi|313200400|ref|YP_004039058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. MP688]
 gi|253985005|gb|ACT49862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. SIP3-4]
 gi|312439716|gb|ADQ83822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylovorus sp. MP688]
          Length = 361

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 36/194 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS    + L     D     +K               D   Y     
Sbjct: 2   SKKRVVVGLSGGVDSSVTALLLKEQGYDVVGLFMKNW----------EDDDTDEYCPAKQ 51

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISE 112
                + V  ++ I    V++     +           A R          E ++    +
Sbjct: 52  DLIDAAAVADKIGIELEAVNFSKEYKERVFQNFLEEYQAGRTPNPDIFCNSEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           HA  + A LI T H    + +    +  +           +       L+  +  P    
Sbjct: 112 HAMGLGADLIATGHYAQVREKNGLFQLLKAEDGSKDQSYFLYRLNQLQLSKTLF-PLGGL 170

Query: 173 RREDIRSFLLQRNI 186
            + ++R    +  +
Sbjct: 171 LKREVREIAHREGL 184


>gi|229824268|ref|ZP_04450337.1| hypothetical protein GCWU000282_01572 [Catonella morbi ATCC 51271]
 gi|229786241|gb|EEP22355.1| hypothetical protein GCWU000282_01572 [Catonella morbi ATCC 51271]
          Length = 516

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 215 IRQQVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKGEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
               +  +  +    V+ K+         S P+        E  Y    E AK      +
Sbjct: 269 D--SLAGKFGLNIIRVNAKDRFLSKLAGVSDPEQKRKIIGNEFVYVFDDEAAKLEGVDFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R+   
Sbjct: 327 AQGTLYTDIIE------SGTKTAETIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRALGT 380

Query: 183 QRN----ISWC 189
                  + W 
Sbjct: 381 ALGMPDSLVWR 391


>gi|325831243|ref|ZP_08164535.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Eggerthella sp. HGA1]
 gi|325486844|gb|EGC89291.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Eggerthella sp. HGA1]
          Length = 327

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 45/218 (20%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           I+     +R+ +    +L+A+SGG DS  +   L   +        +   + V+H L R+
Sbjct: 23  IDEQMDAIRAQIGDKKVLLALSGGVDSSVVAALLIKAIGK------QLICVHVNHGLMRK 76

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKT 116
              ++V  V    ++L      V   +   +     A  EA+          +  E A+ 
Sbjct: 77  GESEQVVDVFQ--NQLDANLVYVDATDRFLELLDDVAEPEAKRKIIGAEFIRVFEEEARK 134

Query: 117 INATLIMT----------------AHTF-----DD-QLE-----TVYMRSQRDYAEKGMG 149
           +   +                   AH       DD Q E      +  + +     + +G
Sbjct: 135 VGDEVSFLAQGTIYPDILESDGVKAHHNVGGLPDDLQFELCEPVKLLYKDEVRVIGRELG 194

Query: 150 LS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           L  GM +   +       R      R+ + +      I
Sbjct: 195 LPEGMVERQPFPGPGLGVRCLGAITRDRLEALREADAI 232


>gi|304391249|ref|ZP_07373193.1| GMP synthase [Ahrensia sp. R2A130]
 gi|303296605|gb|EFL90961.1| GMP synthase [Ahrensia sp. R2A130]
          Length = 528

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 21/186 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R+ V    ++  +SGG DS    + +H  + D      + + I VDH L R    +  
Sbjct: 223 AIRAQVGDGKVICGLSGGVDSSVAALLIHEAIGD------QLTCILVDHGLMR--MDEAA 274

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
           + V+       I    V   +         S P+T      +        E  K   A  
Sbjct: 275 QVVAMFNEHYDIKLIHVDAADMFIDALEGESDPETKRKTIGKLFIDVFEEEARKIGGAEF 334

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 335 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRVLG 391

Query: 182 LQRNIS 187
            +  + 
Sbjct: 392 HELGLP 397


>gi|212712841|ref|ZP_03320969.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM
           30120]
 gi|212684533|gb|EEB44061.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM
           30120]
          Length = 385

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 52/195 (26%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS      L           +K               D+  Y        
Sbjct: 26  KVIVGMSGGVDSSVSAYLLQQQGYQVIGLFMKNW----------EEDDDEEYCSAATDLA 75

Query: 74  --SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    +++                +  R               A +   A
Sbjct: 76  DAQAVCDKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAA 135

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + + A  I T H     D   ++  +R   +  ++   L  +    +         P   
Sbjct: 136 EDLGADYIATGHYVRRRDVDGKSQLLRGLDNNKDQSYFLYTLSHEQVAKS----LFPVGE 191

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 192 LEKPEVRRIAEEIGL 206


>gi|296446290|ref|ZP_06888236.1| GMP synthase, large subunit [Methylosinus trichosporium OB3b]
 gi|296256191|gb|EFH03272.1| GMP synthase, large subunit [Methylosinus trichosporium OB3b]
          Length = 531

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 28/192 (14%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            VR  V    +L  +SGG DS    + +H  + D        + + VDH  LR    +EV
Sbjct: 221 AVRRQVGAGRVLCGLSGGVDSAVAAVLIHEAIGD------ALTCVFVDHGLLRAGEAEEV 274

Query: 71  RYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINAT- 120
             VS       I    V  +            P+       R        E AK I A  
Sbjct: 275 --VSLFRDHYNIPLVHVEAQEMFLSALSGVEDPEVKRKTIGRLF-IETFEEEAKRIAADG 331

Query: 121 -----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +     + D +E+V   S        +        +   +N+ +  P     ++
Sbjct: 332 RGAPQFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKD 388

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  + 
Sbjct: 389 EVRALGRELGLP 400


>gi|196230867|ref|ZP_03129728.1| exsB protein [Chthoniobacter flavus Ellin428]
 gi|196225208|gb|EDY19717.1| exsB protein [Chthoniobacter flavus Ellin428]
          Length = 232

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 37/192 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + ++V VSGG DS+    AL+   ++         A+S D+   +    E+   +  C R
Sbjct: 4   SKVVVLVSGGMDSVA---ALYHTQAEHPV----VGALSFDYG-SKHNHKEIPLAAYHCER 55

Query: 80  LRIAHSVVSWKNSKP---QTGLMAAAR--EARYA------------------LISEHAKT 116
           L + H V+             L +     +  Y                   +   +A++
Sbjct: 56  LGVPHRVIPLSFINELFASDLLQSGGAIPDGHYEELTMKQTVVPFRNGIMLSIAGGYAES 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + A  ++ A    D           D  E  M   G    +     + + RPF+   +  
Sbjct: 116 VGAQGLIIAAHAGDHA------IYPDCREAFMQAMGEAIRLGTYAEIQLLRPFIHFSKAQ 169

Query: 177 IRSFLLQRNISW 188
           I +   +  + +
Sbjct: 170 IAARGHELGVDF 181


>gi|114798657|ref|YP_761231.1| hypothetical protein HNE_2538 [Hyphomonas neptunium ATCC 15444]
 gi|114738831|gb|ABI76956.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 188

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 24/169 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V VSGG DS     A  ++ ++        + + VD+     A +E      VC+ L I
Sbjct: 10  VVLVSGGIDS----AACAAMYANNGGST---TGVFVDYG-HPAAIEEFASAEKVCAALGI 61

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD----DQLETVYMR 138
                S+   +         R A     +  A  I   +I           D   T   R
Sbjct: 62  PLLKTSFSTDRITGPGEIVGRNALLIWSAVFASGIKKGVIAIGVHAGTTYYDCSSTFITR 121

Query: 139 SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                AE   GL            + IS PF+   + ++ S+L +  + 
Sbjct: 122 MDNMLAESTNGL------------VRISAPFVNASKSEVFSYLQRSKVE 158


>gi|308513324|ref|NP_953615.2| tRNA-specific 2-thiouridylase MnmA [Geobacter sulfurreducens PCA]
 gi|81701559|sp|Q74A22|MNMA_GEOSL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41152729|gb|AAR35942.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sulfurreducens PCA]
 gi|298506604|gb|ADI85327.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase
           [Geobacter sulfurreducens KN400]
          Length = 365

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 40/201 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRET--------A 66
            I++A+SGG DS      L     +      + +    F+A                  +
Sbjct: 8   RIVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYANFAA--------PEGEKFDTCCS 59

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALI 110
            D++     V  ++ I   VV+++    +  +          R            ++ L+
Sbjct: 60  LDDIHDARRVAEQIGIPFYVVNFEEEFRRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELL 119

Query: 111 SEHAKTINATLIMTAHTFDD-QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
              A+ + A  + T H     + E       R           +  T+  D       P 
Sbjct: 120 LHKARELGADFLATGHYARRVRGEDGLYHLLRGLDPAKDQSYFLF-TLTQDQLARTLFPL 178

Query: 170 LRCRREDIRSFLLQRNISWCE 190
               +E +R    +R +   E
Sbjct: 179 GEMTKEQVRRLAAERGLRVAE 199


>gi|299535696|ref|ZP_07049017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus fusiformis ZC1]
 gi|298728896|gb|EFI69450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lysinibacillus fusiformis ZC1]
          Length = 374

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 11  RVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDDTDENGVCT--------ATEDYDDV 62

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYALISEHAKTI 117
             VC+++ I +  V+++           L    A R          E ++    EHA  +
Sbjct: 63  IKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMNL 122

Query: 118 NATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  + T H      +   E   +R   D  ++   L+ +    L      +  P     
Sbjct: 123 GADYLATGHYARIDRNGDGEVRMLRGVDDNKDQTYFLNQLSQEQLA----HVMFPIGDIE 178

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  ++
Sbjct: 179 KKEVRKIAEEAGLA 192


>gi|86133287|ref|ZP_01051869.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Polaribacter sp. MED152]
 gi|85820150|gb|EAQ41297.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Polaribacter sp. MED152]
          Length = 395

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 58/199 (29%), Gaps = 44/199 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS      L     +     +K           + +    +E  ++ D 
Sbjct: 2   KRVVVGLSGGVDSSVTAHLLKEQGYEVIGLFMK--------NWHDDSVTISNECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I   VV       +                       RE ++ +  + A
Sbjct: 54  NDAMIVAEKLGIPFQVVDLSEQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIA 113

Query: 115 KTINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             + A  + T H         DD+     +  + +  ++   L  +    L         
Sbjct: 114 LKLGADYVATGHYCRKAEEIIDDKPVYKLLAGKDNNKDQSYFLCQLSQQQLAKA----LF 169

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + ++R    + ++
Sbjct: 170 PIGELTKPEVREIAKEADL 188


>gi|153878044|ref|ZP_02004464.1| PP-loop [Beggiatoa sp. PS]
 gi|152065492|gb|EDN65536.1| PP-loop [Beggiatoa sp. PS]
          Length = 137

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 6/120 (5%)

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A+  N  ++  A   DD  E+  M +      + M  S + D      ++ I RP 
Sbjct: 1   MYRMAREQNYNVLALAQHLDDLAESFLMSALYSGRLQTMKASYLND----AGDIRIIRPL 56

Query: 170 LRCRREDIRSFLLQRNISWCED--PSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLR 227
           +  R + +  F  +  +    D  P+      +R  V+  + + +    Y+       +R
Sbjct: 57  VYAREKQMTDFANRAQLPMILDNCPACFSAPTQREHVKALLANEEREHEYVFQNLLHTMR 116


>gi|121535460|ref|ZP_01667270.1| GMP synthase, large subunit [Thermosinus carboxydivorans Nor1]
 gi|121305969|gb|EAX46901.1| GMP synthase, large subunit [Thermosinus carboxydivorans Nor1]
          Length = 452

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 64/198 (32%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++     +R  V    +L A+SGG DS    + +H  + D      + + + V+H  L
Sbjct: 142 SFVDQAVKAIRRQVGDKRVLCALSGGVDSSVAAVLVHKAVGD------QLTCVFVNHGLL 195

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           R+   ++V  V        I    V             + P+        E       E 
Sbjct: 196 RKGEAEQV--VKTFRDGFHINLVYVDASERFLNRLRGVTDPEQKRKIIGEEFIRVFEDEA 253

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +   ++    + D +E              +        +  D+   +  P     
Sbjct: 254 RKLGDIEFLVQGTLYPDVIE------SGTATAAVIKSHHNVGGLPEDMQFKLVEPLRDLF 307

Query: 174 REDIRSFLLQRNISWCED 191
           ++++R    + N+   ED
Sbjct: 308 KDEVRILARELNLP--ED 323


>gi|330972900|gb|EGH72966.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 366

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|66046419|ref|YP_236260.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae B728a]
 gi|75501528|sp|Q4ZRK0|MNMA_PSEU2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|63257126|gb|AAY38222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. syringae B728a]
          Length = 376

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 12  KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 63

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 64  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 123

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 124 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 179

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 180 KPEVRAIAEKHGLA 193


>gi|325281986|ref|YP_004254528.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
 gi|324313795|gb|ADY34348.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
          Length = 349

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 36/186 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++V +SGG DS    + L     +     ++              K+++  V D C +
Sbjct: 2   KKVVVGMSGGVDSFVTALLLRRQGYEVIGVTLEL-----------WEKNDLSGVRDSCEK 50

Query: 80  LRIAH-----------SVVSWKNSKPQTGL-----MAAAREARYALISEHAKTINATLIM 123
           L I              VV       ++GL         R  ++ L+ + A  +    I 
Sbjct: 51  LNIPFLCREGHELFRQQVVDPFVKAYRSGLTPSPCCICNRRVKWILLQQVADELGVEYIA 110

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRREDIRS 179
           T H      E    R  R Y  KG+         L+ L   + R    P     ++ ++ 
Sbjct: 111 TGHYVR-IAE----REGRFYIRKGIDPQKDQSYFLWGLPQALLRRALTPLGEYTKKQVKE 165

Query: 180 FLLQRN 185
           +  +  
Sbjct: 166 WAARNG 171


>gi|17986711|ref|NP_539345.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str.
           16M]
 gi|256045209|ref|ZP_05448107.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565193|ref|ZP_05835677.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str.
           16M]
 gi|265991642|ref|ZP_06104199.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|24638318|sp|Q8YIL6|MNMA_BRUME RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|17982334|gb|AAL51609.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260151261|gb|EEW86355.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str.
           16M]
 gi|263002426|gb|EEZ15001.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 398

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 27/193 (13%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 12  PEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLY----DHGAAVHRAGSCCAGQDI 67

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V   L I H V+ ++    +  +   A                   ++A + + A
Sbjct: 68  EDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFADLLQTA 127

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + + A  + T H    +    +    R           +  T    ++ ++  P     +
Sbjct: 128 RDLGADALATGHYIRSRANGAHRALYRPVDTDRDQSYFLFATTQEQID-YLRFPLGHLPK 186

Query: 175 EDIRSFLLQRNIS 187
             +R    +  ++
Sbjct: 187 AQVREIAEELGLT 199


>gi|315927397|gb|EFV06735.1| tRNA/Ile-lysidine synthase [Campylobacter jejuni subsp. jejuni
          DFVF1099]
          Length = 72

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 8  SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++  + SL+     L+A S GSDS  L   L          KI F  + +++  R+ + 
Sbjct: 2  QIKDEILSLLKRGKNLLAFSYGSDSSVLFYLLMQ-------EKIDFDLVMINYKTRKNSD 54

Query: 68 DEVRYVSDVCSRLR 81
           E     ++  +  
Sbjct: 55 LEELKAKELALKFH 68


>gi|302185016|ref|ZP_07261689.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae 642]
 gi|330981378|gb|EGH79481.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 366

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|295091002|emb|CBK77109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cf. saccharolyticum K10]
          Length = 359

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 74/227 (32%), Gaps = 49/227 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDH---CLRETAKDE 69
              ++V +SGG DS      L     D      + +   +  A+  +     L   A D+
Sbjct: 3   KKKVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLS--AVDD 60

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEH 113
            R V      L I + V+++K    +                    A  R  ++  + + 
Sbjct: 61  ARRV---AEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKR 117

Query: 114 AKTINATLIMTAHTFDDQLETV------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           +  I A  I T H    ++E +        +S     ++   L  +    L    +    
Sbjct: 118 SLEIGADYIATGHYA--RIEKLPNGRYALKKSATAAKDQTYALYNLTQEQLAHTLM---- 171

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFERVRVRRFV 208
           P     +++IR    + N+     P +       D+ + R  +R  +
Sbjct: 172 PVGEYTKDEIRKMAQELNLRVAHKPDSQEICFIPDNDYAR-FIREDI 217


>gi|153008906|ref|YP_001370121.1| tRNA-specific 2-thiouridylase MnmA [Ochrobactrum anthropi ATCC
           49188]
 gi|166235072|sp|A6WZ88|MNMA_OCHA4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151560794|gb|ABS14292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 398

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 27/193 (13%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 12  PEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLY----DHGAAVHRAGSCCAGQDI 67

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V   L I H V+ ++    +  +   A                   ++A + + A
Sbjct: 68  EDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFADLLQTA 127

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + + A  + T H    +    +    R           +  T    ++ ++  P     +
Sbjct: 128 RDLGADALATGHYIRSRANGAHRALYRPVDTDRDQSYFLFATTQEQID-YLRFPLGHLPK 186

Query: 175 EDIRSFLLQRNIS 187
             +R    +  ++
Sbjct: 187 AQVREIAEEMGLT 199


>gi|256850945|ref|ZP_05556334.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661159|ref|ZP_05862073.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
 gi|282934142|ref|ZP_06339420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
 gi|256616007|gb|EEU21195.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN]
 gi|260548096|gb|EEX24072.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN]
 gi|281301756|gb|EFA94022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
          Length = 375

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     + +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDDTDDAGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++    Q             R          E ++    E A +++
Sbjct: 61  RVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D    T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYIAMGHYAKTVKDKNGVTHMMRPKDGNKDQTYFLSQLSQEQIK----HVIFPLANLTK 176

Query: 175 EDIRSFLLQRNIS 187
             +R    +  ++
Sbjct: 177 PQVREIAERAGLA 189


>gi|251778793|ref|ZP_04821713.1| GMP synthase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083108|gb|EES48998.1| GMP synthase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 513

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     VR  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVEKTIEEVRQKVGNGKVLCALSGGVDSSVAAVLLSRAVGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVR 71
           R+   DEV 
Sbjct: 254 RKNEGDEVE 262


>gi|188589233|ref|YP_001919810.1| GMP synthase [Clostridium botulinum E3 str. Alaska E43]
 gi|259647751|sp|B2UZ05|GUAA_CLOBA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|188499514|gb|ACD52650.1| GMP synthase [Clostridium botulinum E3 str. Alaska E43]
          Length = 513

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     VR  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVEKTIEEVRQKVGNGKVLCALSGGVDSSVAAVLLSRAVGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVR 71
           R+   DEV 
Sbjct: 254 RKNEGDEVE 262


>gi|187932912|ref|YP_001884624.1| GMP synthase [Clostridium botulinum B str. Eklund 17B]
 gi|259647750|sp|B2TIX3|GUAA_CLOBB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187721065|gb|ACD22286.1| GMP synthase [Clostridium botulinum B str. Eklund 17B]
          Length = 513

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     VR  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVEKTIEEVRQKVGNGKVLCALSGGVDSSVAAVLLSRAVGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVR 71
           R+   DEV 
Sbjct: 254 RKNEGDEVE 262


>gi|307702622|ref|ZP_07639574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
 gi|307623738|gb|EFO02723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
          Length = 373

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  I T H      D   E   +   R      ++   LS +    L         
Sbjct: 117 MTLGADYIATGHYARVARD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 170 PLGHLEKPEVRKLAEEAGLA 189


>gi|293364413|ref|ZP_06611139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
 gi|291317259|gb|EFE57686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis ATCC 35037]
          Length = 415

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 47  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 98

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 99  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 158

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  I T H      D   E   +   R      ++   LS +    L         
Sbjct: 159 MTLGADYIATGHYARVARD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 211

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 212 PLGHLEKPEVRKLAEEAGLA 231


>gi|299131958|ref|ZP_07025153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Afipia sp. 1NLS2]
 gi|298592095|gb|EFI52295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Afipia sp. 1NLS2]
          Length = 393

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 26/132 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++VA+SGG DS      L +   D     ++      DH     R+    A  ++
Sbjct: 11  PSGTRVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLY----DHGAATHRKGACCAGQDI 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
               DV  R+ I H V+ +++   ++ +   A                R  ++  +   A
Sbjct: 67  HDARDVAERIGIPHYVLDYESRFRESVIDRFAESYVLGETPVPCIECNRSVKFRDLLTTA 126

Query: 115 KTINATLIMTAH 126
           + + A  + T H
Sbjct: 127 RELGAKALATGH 138


>gi|94967190|ref|YP_589238.1| hypothetical protein Acid345_0159 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549240|gb|ABF39164.1| conserved hypothetical protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 283

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 60/195 (30%), Gaps = 38/195 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              +S+   +RSL     +LVA SGG DS  L    H VL D     +  SA        
Sbjct: 13  KKQQSLEAHLRSL---GRLLVAYSGGIDSAYLAYVAHQVLGDNMLAILADSA-------- 61

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSW-KNSKPQTGLMAAAR-----EARYALISEHAKTI 117
             A+ ++R          I   VV   +   P      A R     +  +A++   A   
Sbjct: 62  SLARAQMRDALAFGEEQSIPVQVVQTSEMDSPDYRRNDAMRCFHCKDELFAVMERVATEH 121

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRRE 175
             + +      DDQ               G    G      +     +  P L     + 
Sbjct: 122 GYSKVAYGVNLDDQ---------------GDFRPGQRAAKQHG----VVAPLLDAAMTKS 162

Query: 176 DIRSFLLQRNISWCE 190
           DIR    Q  +   +
Sbjct: 163 DIRELARQAGLRVWD 177


>gi|293401686|ref|ZP_06645828.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304944|gb|EFE46191.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 513

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 29/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + D      +   + +DH  LR+    E  
Sbjct: 209 IRKTVGKDKVLLGLSGGVDSSVVAALLHKAIGD------QLICMFIDHGLLRKG---EAE 259

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V       + +    +  K          S P+        E  Y     + + +   +
Sbjct: 260 SVMETFGREMNVHLVKIDAKERFLSKLAGVSDPEKKRKIIGNEFVYTFDEEVKKISAGED 319

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 320 IKWLAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVR 373

Query: 179 SFLLQRNIS 187
           +   +  + 
Sbjct: 374 ALGSELGLP 382


>gi|325964061|ref|YP_004241967.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470148|gb|ADX73833.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 516

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 68/191 (35%), Gaps = 27/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +  A ++  +SGG DS     A+ + L  R+ G  + + + VDH  LRE   ++V 
Sbjct: 205 IRKQIGDARVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLREGEAEQVE 258

Query: 72  --YVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKT-------- 116
             +V+    +L +A+    +       S P+T      RE   A                
Sbjct: 259 RDFVAATGVKLYVANEQERFLSALAGVSDPETKRKIIGREFIRAFEEAELAIIAEAAAHG 318

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E+             +        +  DL   +  P     +++
Sbjct: 319 EKIKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLQFELVEPLRALFKDE 373

Query: 177 IRSFLLQRNIS 187
           +R+   Q  + 
Sbjct: 374 VRAVGAQLGLP 384


>gi|295696590|ref|YP_003589828.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Bacillus tusciae DSM 2912]
 gi|295412192|gb|ADG06684.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Bacillus tusciae DSM 2912]
          Length = 602

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 13/134 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +   +  R  +  L     +++A SGG DS  LL A    L     G  +  A++ D   
Sbjct: 466 VEAHDKCRVLIGRLRELGRVVIAFSGGVDSTFLLKAALEAL-----GPDRVLAVTADSET 520

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAKT 116
               +       ++   L   H ++  +  +        A          ++ +   AK 
Sbjct: 521 YPERERWEA--VELARELGSPHLLIQARELEIPGYAENPADRCYFCKQELFSHLIPLAKQ 578

Query: 117 INATLIMTAHTFDD 130
                ++     DD
Sbjct: 579 KGYDHVIFGAIADD 592


>gi|217976569|ref|YP_002360716.1| GMP synthase, large subunit [Methylocella silvestris BL2]
 gi|217501945|gb|ACK49354.1| GMP synthase, large subunit [Methylocella silvestris BL2]
          Length = 534

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 30/194 (15%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE 69
             +R+ V    +L  +SGG DS    + +   + +R       + + VDH  LR+    E
Sbjct: 223 AAIRAQVGSGRVLCGLSGGVDSAVAALLIFEAIGER------LTCVFVDHGLLRQG---E 273

Query: 70  VRYVSDVCS-RLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINA 119
              V  +      I    V  K            P+       R          AK I A
Sbjct: 274 AEEVVTLFRGHYNIPLHHVEAKALFLGALTGVRDPEEKRKIIGRLF-ITAFEAEAKKIAA 332

Query: 120 T------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +     + D +E+V   S        +        +   +N+ +  P     
Sbjct: 333 DGRGAPEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMNMKLVEPLRELF 389

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 390 KDEVRALGRELGLP 403


>gi|225026476|ref|ZP_03715668.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353]
 gi|224956215|gb|EEG37424.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353]
          Length = 354

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 40/192 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRET---AKDEVRYV 73
           L+A+SGG DS      +     D      + +              RE    +  ++   
Sbjct: 6   LIAMSGGVDSSVAAYLMKEAGYDCIGVTMKLYDNEDIGMA------REKTCCSLSDIEDA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTI 117
             VC +L I + V ++K+   +                       R  ++  + + AK +
Sbjct: 60  RSVCVKLGIPYYVFNFKDDFKEKVIDNFISCYQNGMTPNPCIECNRHLKFEHLYKRAKVL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +  +I+T H    T D+Q     ++   D  ++   L  +    L +       P     
Sbjct: 120 HCDVIVTGHYAKITHDEQG-YHLLKGVDDSKDQSYVLYSLTQEQLANTCF----PLGDYS 174

Query: 174 REDIRSFLLQRN 185
           + +IR    ++ 
Sbjct: 175 KTEIRKIAEEQG 186


>gi|209885588|ref|YP_002289445.1| glutamine-hydrolyzing GMP synthase [Oligotropha carboxidovorans
           OM5]
 gi|226739651|sp|B6JHM4|GUAA_OLICO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|209873784|gb|ACI93580.1| glutamine-hydrolyzing GMP synthase [Oligotropha carboxidovorans
           OM5]
          Length = 531

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 27/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE +R  V        ++  +SGG DS    + +H  + D      + + + VDH  L
Sbjct: 222 EAIEKIRAQVGQ----GRVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLL 271

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R     E   V  +      I    V             + P+       R        E
Sbjct: 272 RM---AEAETVVSLFRDHYNIPLVHVDASKTFLGELAGVTDPELKRKTIGRLFIDVFDEE 328

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K   A  +     + D +E+V   S        +        +   + + +  P    
Sbjct: 329 AKKIGGADFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPARMKMKLVEPLREL 385

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  + 
Sbjct: 386 FKDEVRALGRELGLP 400


>gi|283852168|ref|ZP_06369441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio sp. FW1012B]
 gi|283572394|gb|EFC20381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio sp. FW1012B]
          Length = 357

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 26/124 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DE-VRYVSDVCS 78
            + VAVSGG+DS      L S+   R+ G     A+   H L    K  E  R +   C 
Sbjct: 2   RLAVAVSGGADS------LLSLGLLRAEGH-DVVAVH-AHFLPPDMKGQELARAIETQCG 53

Query: 79  RLRIAHSVVSW---------------KNSKPQTGLMAAA-REARYALISEHAKTINATLI 122
           RL +  + V                   +       AA  R+ ++ L+ E A+ + A  +
Sbjct: 54  RLGVPFAAVDLSREFGRQVVAPFIAAYAAGQTPNPCAACNRDMKFGLLMEAARELGADKL 113

Query: 123 MTAH 126
            T H
Sbjct: 114 ATGH 117


>gi|78185088|ref|YP_377523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9902]
 gi|123580788|sp|Q3AV73|MNMA_SYNS9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78169382|gb|ABB26479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9902]
          Length = 389

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 56/205 (27%), Gaps = 37/205 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLR 63
           E+    +R       + V +SGG DS      L     +     +             L 
Sbjct: 12  EAALGRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSGKGACCAEGLV 71

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARY 107
           + A         +C +L I H VV  + +  +  +                    R  ++
Sbjct: 72  DAAG--------ICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCNRSVKF 123

Query: 108 A-LISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
             ++   A+  N   I T H        D      +R      ++   L  +    L   
Sbjct: 124 GPMLEWAAQERNLPRIATGHYARIRHGGDCGRHQLLRGLDSRKDQSYFLYDLPQEAL--- 180

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI 186
              I  P     + D R    +  +
Sbjct: 181 -GRIVFPLGELTKADTRIEAGRHGL 204


>gi|289679182|ref|ZP_06500072.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           syringae FF5]
          Length = 246

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|237748639|ref|ZP_04579119.1| GMP synthase [Oxalobacter formigenes OXCC13]
 gi|229380001|gb|EEO30092.1| GMP synthase [Oxalobacter formigenes OXCC13]
          Length = 535

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 67/191 (35%), Gaps = 32/191 (16%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR     E 
Sbjct: 219 AIRKKVGKDDVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN---EG 269

Query: 71  RYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTIN 118
           + V D     L +   V+    S+   G +A             RE      +E  K  N
Sbjct: 270 KMVMDMFAKNLGVK--VIHVDASEQFMGQLAGVTDPEEKRKIIGREFVEVFQTEAGKIKN 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRCRRED 176
           A  +     + D +E+          +KG  +        +   LNL +  P     +++
Sbjct: 328 AKWLAQGTIYPDVIESA------GKGKKGQTIKSHHNVGGLPDTLNLQLLEPLRELFKDE 381

Query: 177 IRSFLLQRNIS 187
           +R   L   + 
Sbjct: 382 VRELGLALGLP 392


>gi|317132648|ref|YP_004091962.1| GMP synthase, large subunit [Ethanoligenens harbinense YUAN-3]
 gi|315470627|gb|ADU27231.1| GMP synthase, large subunit [Ethanoligenens harbinense YUAN-3]
          Length = 510

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 28/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV- 70
           ++  +    +L+A+SGG DS      L   +        + + I VDH L R+   DEV 
Sbjct: 209 LKEKIGHGRVLLALSGGVDSAVAAALLSRAVGR------QLTCIFVDHGLMRKNEGDEVD 262

Query: 71  --------RYVS-DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA-T 120
                   ++V  D   R       VS    K +       R     +  + A  I A  
Sbjct: 263 QAFQGRDIQFVRVDAAERFLEKLQGVSDPERKRKIIGEEFIR-----VFEDEANKIGAVD 317

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    +    +   +G  G+ + + +     I  P     ++++R+ 
Sbjct: 318 FLAQGTIYPDVIESGLGDAATIKSHHNVG--GLPEHVRFK---EIVEPLRLLFKDEVRAL 372

Query: 181 LLQRNIS 187
            L+  + 
Sbjct: 373 GLELGLP 379


>gi|313898455|ref|ZP_07831992.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
 gi|312956837|gb|EFR38468.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Clostridium sp. HGF2]
          Length = 513

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 29/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + D      +   + +DH  LR+    E  
Sbjct: 209 IRKTVGTDKVLLGLSGGVDSSVVAALLHKAIGD------QLICMFIDHGLLRKG---EAE 259

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT---IN 118
            V       + I    +  K          S P+        E  Y    E  K     +
Sbjct: 260 SVMETFGREMNINLVKIDAKERFLSKLAGVSDPEKKRKIIGNEFVYTFDEEVKKLTSGED 319

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 320 IKWLAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 373

Query: 179 SFLLQRNIS 187
           +   +  + 
Sbjct: 374 ALGTELGLP 382


>gi|239637572|ref|ZP_04678544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus warneri L37603]
 gi|239596790|gb|EEQ79315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus warneri L37603]
          Length = 372

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    EHA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIRRHEDGHVE--MLRGIDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNIS 187
             ++ +R    +++++
Sbjct: 173 IDKKRVREIAEEQDLA 188


>gi|163816407|ref|ZP_02207773.1| hypothetical protein COPEUT_02596 [Coprococcus eutactus ATCC 27759]
 gi|158448404|gb|EDP25399.1| hypothetical protein COPEUT_02596 [Coprococcus eutactus ATCC 27759]
          Length = 513

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ +    +L A+SGG DS    + L   +        + + + VDH  LR+   DEV 
Sbjct: 209 LRAKIGDGKVLCALSGGVDSSVAAVLLSKAIGK------QLTCVFVDHGLLRKNEGDEVE 262

Query: 72  YV 73
            V
Sbjct: 263 AV 264


>gi|326201928|ref|ZP_08191798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987723|gb|EGD48549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium papyrosolvens DSM 2782]
          Length = 359

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 53/206 (25%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-------------- 64
           P  +++ +SGG DS      L     +     ++          ++              
Sbjct: 3   PKKVMLGMSGGVDSSVAAAILLKQGYEVIGVTLQI--------WQDMDEERQKSEGGCCS 54

Query: 65  -TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARY 107
            +A D+ R V++   +L I + V+++K+   +T +                 A  R  ++
Sbjct: 55  LSAVDDARRVAN---KLGIPYYVLNFKDIFNKTVIEYFKEEYFKGRTPNPCIACNRHVKW 111

Query: 108 ALISEHAKTINATLIMTAHTF---DDQLET---VYMRSQRDYAEKGMGLSGMCDTILYDL 161
             + + A ++    I T H      D  +T   +  +S  D  ++   L  +    L   
Sbjct: 112 QAMLDKALSMGIDYIATGHYAKVMQD-AKTGRFILKKSVTDRKDQTYALYNLTQQQLSHT 170

Query: 162 NLWISRPFLRCRREDIRSFLLQRNIS 187
            +    P     +++IR    +  +S
Sbjct: 171 LM----PVGDYTKDEIREIAKEIGLS 192


>gi|71483021|gb|AAZ32455.1| NH(3)-dependent NAD+ synthetase [uncultured euryarchaeote Alv-FOS1]
          Length = 264

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 19/110 (17%)

Query: 1   MFLSP------IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54
           M LSP      ++++  F+   V    ++V +SGG DS  +L          S G  +  
Sbjct: 1   MNLSPELPDYALDTITHFISDFVGDGKVVVGLSGGLDSAVVLKLCA-----MSLGPERVL 55

Query: 55  AISVDHCLRETA---KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA 101
           A+ +       +   ++E     +V     +    +   ++      MAA
Sbjct: 56  AVHM-----PDSVTPEEESEDARNVAKEAEVEFREIRIDDAVETIADMAA 100


>gi|321314361|ref|YP_004206648.1| GMP synthase [Bacillus subtilis BSn5]
 gi|320020635|gb|ADV95621.1| GMP synthase [Bacillus subtilis BSn5]
          Length = 513

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 203 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  ++         S P+        E  Y    E
Sbjct: 257 RKG---EAEGVMKTFSEGFNMNVIKVDAQDRFLDKLKGVSDPEQKRKIIGNEFIYVFDDE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 314 ADKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 368 FKDEVRALGTELGIP 382


>gi|304311842|ref|YP_003811440.1| GMP synthase [gamma proteobacterium HdN1]
 gi|301797575|emb|CBL45795.1| GMP synthase [gamma proteobacterium HdN1]
          Length = 521

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 69/195 (35%), Gaps = 23/195 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E +   +R  V    +L+ +SGG DS  +   L+  + D      K + + VDH  L
Sbjct: 208 NIVEDMVRRIREQVGEDEVLLGLSGGVDSSVVAALLNRAIGD------KLTCVFVDHGLL 261

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R+    E   V +     + I    V  ++         +  E +  +I           
Sbjct: 262 RKN---EGNQVMATFAQHMGIRVIRVDAEDVFLGKLKGESDPERKRKIIGNTFIEVFDQE 318

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A+  N   +     + D +E+      ++     +        +  D+ + +  P    
Sbjct: 319 SARLNNIKWLAQGTIYPDVIES---AGTKNGKAHLIKSHHNVGGLPEDMKMKLVEPLREL 375

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   ++  + 
Sbjct: 376 FKDEVRRIGVELGLP 390


>gi|134298633|ref|YP_001112129.1| tRNA-specific 2-thiouridylase MnmA [Desulfotomaculum reducens MI-1]
 gi|172044262|sp|A4J2K1|MNMA_DESRM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134051333|gb|ABO49304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotomaculum reducens MI-1]
          Length = 367

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 45/201 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDH--CLRETAKDEVRY 72
             +LVA+SGG DS      L     D           + + +  D+  C   TA D+ R 
Sbjct: 5   KRVLVAMSGGVDSSVTAALLQQQGYDIVGVTMQIWDPEVTVVGDDYVGCCSLTAVDDARR 64

Query: 73  VSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKT 116
           V++V   L I + V++++                         A  R  ++  + + A+ 
Sbjct: 65  VANV---LGIPYYVLNFRELFTEKVIQYFVDEYFQGRTPNPCIACNRFIKFEALLQRARQ 121

Query: 117 INATLIMTAHTFDDQLETVYMRS------QRDYAEKGMGLSGMCDTILYD-LNLWISR-- 167
           +    I T H           R       QR   +K +        +LY      I+   
Sbjct: 122 MGFDYIATGHYA---------RLGYSEEFQRYTVKKALDDKKDQSYVLYGFTQDQIAHTL 172

Query: 168 -PFLRCRREDIRSFLLQRNIS 187
            P     ++ +R    +  + 
Sbjct: 173 MPLADYTKDQVRGIAKEMGLP 193


>gi|253682565|ref|ZP_04863362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum D str. 1873]
 gi|253562277|gb|EES91729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum D str. 1873]
          Length = 346

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 52/199 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + + +SGG DS      L     D     +K             +  +V    + +  
Sbjct: 3   KKVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKV------------SDVDVSEDAAKIAQ 50

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLI 122
           +L I + ++  ++      +   A+E                 ++ ++ + AK + A  I
Sbjct: 51  KLDIPYHILDLRDEFKNHVIDNFAKEYLQGRTPNPCAMCNKYIKFGVLLQKAKELGADYI 110

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGL-----------SGMCDTILYDLNLWISRPFLR 171
            T H              R     G  L           + M  ++  D+   I  P   
Sbjct: 111 ATGHYA------------RVEEHNGRYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGE 158

Query: 172 CRREDIRSFLLQRNISWCE 190
             +  IR      ++   +
Sbjct: 159 YTKVQIREIARNLDLEVHD 177


>gi|217969633|ref|YP_002354867.1| tRNA-specific 2-thiouridylase MnmA [Thauera sp. MZ1T]
 gi|217506960|gb|ACK53971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thauera sp. MZ1T]
          Length = 365

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 61/207 (29%), Gaps = 48/207 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS    + L       +   +K               D+  Y        
Sbjct: 2   KVVVGMSGGVDSAVTALLLKRQGYQVTGLFMKNW----------EDDDDSEYCSTRQDLV 51

Query: 74  --SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
             + VC  + I   VV++                 A R          E ++    +HA 
Sbjct: 52  DVASVCDVIGIDLEVVNFSAEYKDRVFADFLHEYEAGRTPNPDVLCNSEIKFRCFLDHAM 111

Query: 116 TINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + A  I T H         D + E   ++++    ++   L  +    L         P
Sbjct: 112 QLGAERIATGHYAQVREWANDGRSEYQLLKAEDGTKDQSYFLYRLNQEQLAKTMF----P 167

Query: 169 FLRCRREDIRSFLLQRNISWCE--DPS 193
                + ++R    +  +   E  D +
Sbjct: 168 LGALYKREVRRIAAEAGLHVAEKKDST 194


>gi|149194412|ref|ZP_01871509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caminibacter mediatlanticus TB-2]
 gi|149135587|gb|EDM24066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caminibacter mediatlanticus TB-2]
          Length = 339

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 58/184 (31%), Gaps = 30/184 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            +LV VSGG DS      L     +     +K  +  V+H       + ++ +  +  ++
Sbjct: 2   RVLVGVSGGVDSAVTTYLLKKAGYEVIGIYLKMHS-GVNH------SENLKKIEKLSKKI 54

Query: 81  RIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLIMT 124
             ++ V   +    +                   A   ++ ++ +     +  N     T
Sbjct: 55  GFSYVVEDVEEEFRKEVYEYFIKSYEEGSTPNPCAMCNKQIKFGIFMNFLEKYNCEKAAT 114

Query: 125 AHT-FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H   +D        ++    ++   L G+   +L      +  P     + +I+    +
Sbjct: 115 GHYVRNDG--KFLYEAKDKNKDQSYFLFGIKKEVLPK----LIFPLGEYTKNEIKLIAKE 168

Query: 184 RNIS 187
             + 
Sbjct: 169 IGLE 172


>gi|21283300|ref|NP_646388.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486454|ref|YP_043675.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|297207658|ref|ZP_06924093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911740|ref|ZP_07129183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|24638304|sp|Q8NW84|MNMA_STAAW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56749706|sp|Q6G8U8|MNMA_STAAS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21204740|dbj|BAB95436.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244897|emb|CAG43358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296887675|gb|EFH26573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300885986|gb|EFK81188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 372

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
            +VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118

Query: 118 NATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +    L      +  P   
Sbjct: 119 GADYVATGHYARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGD 172

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 173 IEKIEVRRIAEEQGL 187


>gi|84516171|ref|ZP_01003531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Loktanella vestfoldensis SKA53]
 gi|84509867|gb|EAQ06324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Loktanella vestfoldensis SKA53]
          Length = 379

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 74/234 (31%), Gaps = 54/234 (23%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SPI S+ F          ++VA+SGG DS  +   L     D     ++      DH   
Sbjct: 5   SPINSLGFA--KAPADTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLY----DHG-- 56

Query: 64  ET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------------- 102
                     A  ++     V   +   H V+ ++N+  +  +   A             
Sbjct: 57  AALAKKGACCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCI 116

Query: 103 ---REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD---- 155
                 ++  + + A+ ++A  + T H             QR    +G  L    D    
Sbjct: 117 RCNERVKFKDLLQTARDLDADCMATGH-----------YIQRKMGVQGAELHSAADAAKD 165

Query: 156 ------TILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 +   D   ++  P      +++ R+   +  +S  + P + D  F   
Sbjct: 166 QSYFLFSTTQDQLDYLRFPLGHHKSKDETRALAAKYGLSVADKPDSQDICFVPN 219


>gi|309774715|ref|ZP_07669739.1| GMP synthase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917615|gb|EFP63331.1| GMP synthase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 513

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 29/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + D      +   + +DH  LR+    E  
Sbjct: 209 IRKTVGTDKVLLGLSGGVDSSVVAALLHKAIGD------QLICMFIDHGLLRKG---EAE 259

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT---IN 118
            V       + I    +  K          S P+        E  Y    E  K     +
Sbjct: 260 SVMETFGREMNINLVKIDAKERFLSKLAGVSDPEKKRKIIGNEFVYTFDEEVKKLTSGED 319

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 320 IKWLAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVR 373

Query: 179 SFLLQRNIS 187
           +   +  + 
Sbjct: 374 ALGTELGLP 382


>gi|315501325|ref|YP_004080212.1| gmp synthase, large subunit [Micromonospora sp. L5]
 gi|315407944|gb|ADU06061.1| GMP synthase, large subunit [Micromonospora sp. L5]
          Length = 518

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    ++  +SGG DS      +H  + D      + + + VDH  LR    ++V 
Sbjct: 212 IREQIGDKEVICGLSGGVDSAVAAALVHRAVGD------QLTCVFVDHGLLRAGEAEQVE 265

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARY---ALISEHAKTINA 119
              D  +   I   VV  +          + P+       RE      A   E A   + 
Sbjct: 266 --KDYVAATGIKLKVVDARERFLGALAGVTDPEQKRKIIGREFIRVFEAAAREIAAHGDV 323

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 324 EYLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLKFALVEPLRTLFKDEVRT 378

Query: 180 FLLQRNIS 187
             L+  + 
Sbjct: 379 IGLELGLP 386


>gi|212223802|ref|YP_002307038.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
 gi|212008759|gb|ACJ16141.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 264

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 39/187 (20%)

Query: 1   MFLSPIESVRFF-VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M  S +  +R F  RS +Y   ILV  SGG DS   L  L+          +  SA++  
Sbjct: 1   MIESVVNEIREFSKRSGLYEKRILVLFSGGKDSSLALYLLNE-------AGLNVSALTFF 53

Query: 60  HCLRETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE------------AR 106
           H     +  E + +      +L + H +V   +   +     A R+              
Sbjct: 54  HRW---SWRETLNWAMKFTKKLGVEHYLVDVTDGLLR---ETAGRKGPICINCKKVMLWN 107

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
                  A      ++      +D++    +   R    +  GL          + +   
Sbjct: 108 AKWF---AINNGFDVLAKGDNANDKIIGALLDQCR-TDIRLCGLP--------RIGIPFF 155

Query: 167 RPFLRCR 173
           RP ++  
Sbjct: 156 RPLIKYT 162


>gi|71666942|ref|XP_820425.1| GMP synthase [Trypanosoma cruzi strain CL Brener]
 gi|70885769|gb|EAN98574.1| GMP synthase, putative [Trypanosoma cruzi]
          Length = 657

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           ++R           +L +A SGG DS    + L   L     G  +   + +DH    LR
Sbjct: 210 ALRMIRERTAQGQKVLCLA-SGGVDSTVCAVLLLKAL-----GPERVVCVHIDHGFMRLR 263

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104
                E   V        ++  VV  +    +      AR 
Sbjct: 264 -----ETEEVVAALREAGVSVVVVHARAQFAEATTEMPARR 299


>gi|332187411|ref|ZP_08389149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. S17]
 gi|332012572|gb|EGI54639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. S17]
          Length = 365

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                I+VA+SGG DS  +    H+  ++     ++      DH     R     A  ++
Sbjct: 10  PRAKRIVVAMSGGVDSSVVAALAHATGAETIGVTLQLY----DHGEAVGRAGACCAGRDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISEHA 114
           R    VC RL IAH V   ++S     +   A E                     + + A
Sbjct: 66  RDARAVCDRLGIAHYVFDHEDSFRTQVVDRFADEYLAGRTPIPCVQCNMGPKFTDLLKLA 125

Query: 115 KTINATLIMTAHTFDDQLE-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + + A  + T H    ++E T      R           +  T    LN ++  P     
Sbjct: 126 RDLGADCLATGHYVR-RVEGTHGAELHRGADPARDQSYFLFATTQEQLN-FLRFPLGALP 183

Query: 174 REDIRSFLLQRNIS 187
           +  +R    + ++S
Sbjct: 184 KSRVREIAAELSLS 197


>gi|317056376|ref|YP_004104843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 7]
 gi|315448645|gb|ADU22209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 7]
          Length = 360

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 41/197 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH------CLRET---AKDEV 70
             +L A+SGG DS   +  L            + +  ++         +RE    + ++V
Sbjct: 4   KKVLAAMSGGVDSSTAVKLLLD-------AGYEVAGATMHLYNNEDIGIREKSCCSLNDV 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAARE-ARYALISEHA 114
                V  +L I   V ++ +                           +  ++    + A
Sbjct: 57  EDARLVALKLGIDFHVFNFSDEFKTCVMDNFVDTYLAGGTPNPCIECNKHLKFGRFLDRA 116

Query: 115 KTINATLIMTAH----TFDD-QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + +    I T H     +DD     +  RS     ++   L GM      D       P 
Sbjct: 117 RMLGFDYIATGHYVTSHYDDASGRWLLKRSADSSKDQSYVLYGMTQ----DQLAHTIFPV 172

Query: 170 LRCRREDIRSFLLQRNI 186
               + +IR+   +  +
Sbjct: 173 GEMSKPEIRAIAEENGL 189


>gi|323342676|ref|ZP_08082908.1| GMP synthase [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463788|gb|EFY08982.1| GMP synthase [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 510

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 20/190 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E     +R  V   H++ A+SGG DS  +   LH  + D      + + I VDH  LR+
Sbjct: 202 VEEQTAIIREKVGNEHVICALSGGVDSAVVAALLHHAIGD------QLTCIFVDHGLLRK 255

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTI 117
              D V  V     ++ +       +          P+        E  Y    E  K  
Sbjct: 256 GEADSVVEVFQDHFKMNLIKVDAQRRFLDKLAGVDDPEKKRKIIGNEFIYVFEDETKKLR 315

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +     + D +E            + +        +  D++  +  P     ++++
Sbjct: 316 DAKWLAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMDFKLIEPLDTLFKDEV 369

Query: 178 RSFLLQRNIS 187
           R   L   + 
Sbjct: 370 RKLGLVLGLP 379


>gi|253700862|ref|YP_003022051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M21]
 gi|251775712|gb|ACT18293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M21]
          Length = 359

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 61/200 (30%), Gaps = 43/200 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----------D 68
              ILVA+SGG DS      L     D     ++          R  +            
Sbjct: 7   KKRILVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYE-------RPESTPSGGKTCCSLT 59

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAARE----AR------YALISE 112
           +V   + V  RL I   VV  +    +      T   AA R     AR      + L+ E
Sbjct: 60  DVMDAARVAKRLGIPFEVVDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLE 119

Query: 113 HAKTINATLIMTAHTF---DDQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
              +    L+ T H      D  E +   ++      ++   L GM    L      I  
Sbjct: 120 MTASFGTDLLATGHYARIEQDS-EGIYQLLKGLDPGKDQSYFLFGMNQEQLSR----IVF 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     +  +R    + N+ 
Sbjct: 175 PVGNLEKRVVREHAARFNLP 194


>gi|50121369|ref|YP_050536.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium atrosepticum
           SCRI1043]
 gi|71658013|sp|Q6D4E9|MNMA_ERWCT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49611895|emb|CAG75344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 368

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNW----------EEDDDTEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|119386404|ref|YP_917459.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Paracoccus denitrificans PD1222]
 gi|119376999|gb|ABL71763.1| GMP synthase (glutamine-hydrolyzing) [Paracoccus denitrificans
           PD1222]
          Length = 519

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 22/191 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E++R  +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR  
Sbjct: 210 EAIRK-IREQVGSKRVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLN 262

Query: 66  AKDEVRYVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI---- 117
             +EV  V+       I          + ++          R+    L  +  +      
Sbjct: 263 EAEEV--VTMFRDNYNIPLIHADESELFLSALEGVSDPEVKRKTIGKLFIDVFQKYASEI 320

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 321 EGAEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 377

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 378 VRALGRELGLP 388


>gi|302869863|ref|YP_003838500.1| GMP synthase large subunit [Micromonospora aurantiaca ATCC 27029]
 gi|302572722|gb|ADL48924.1| GMP synthase, large subunit [Micromonospora aurantiaca ATCC 27029]
          Length = 518

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    ++  +SGG DS      +H  + D      + + + VDH  LR    ++V 
Sbjct: 212 IREQIGDKEVICGLSGGVDSAVAAALVHRAVGD------QLTCVFVDHGLLRAGEAEQVE 265

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARY---ALISEHAKTINA 119
              D  +   I   VV  +          + P+       RE      A   E A   + 
Sbjct: 266 --KDYVAATGIKLKVVDARERFLGALAGVTDPEQKRKIIGREFIRVFEAAAREIAAHGDV 323

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 324 EYLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLKFALVEPLRTLFKDEVRT 378

Query: 180 FLLQRNIS 187
             L+  + 
Sbjct: 379 IGLELGLP 386


>gi|194398405|ref|YP_002036838.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae G54]
 gi|229487424|sp|B5E605|MNMA_STRP4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|194358072|gb|ACF56520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae G54]
          Length = 373

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 60/197 (30%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHA 114
           + V  V  ++ I +  V+++             E R                     ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYXXAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|317473498|ref|ZP_07932790.1| GMP synthase domain-containing protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899009|gb|EFV21031.1| GMP synthase domain-containing protein [Anaerostipes sp. 3_2_56FAA]
          Length = 513

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS    + L   +        + + + VDH  LR+   DEV 
Sbjct: 209 IREKVGDGKVLCALSGGVDSSVAAVMLAKAVGK------QLTCVFVDHGLLRKNEGDEVE 262

Query: 72  YV 73
            V
Sbjct: 263 AV 264


>gi|332652518|ref|ZP_08418263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcaceae bacterium D16]
 gi|332517664|gb|EGJ47267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcaceae bacterium D16]
          Length = 361

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 48/200 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----------KDE 69
            I  A+SGG DS   +  L     D     +              A             +
Sbjct: 3   PIAAAMSGGVDSSTAVWLLQQAGYDPVGFTMSL--------FSPDALPPDQRSQCHTARD 54

Query: 70  VRYVSDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISEH 113
           V     V  RL I+H                 V                R  ++  + + 
Sbjct: 55  VADAQAVAQRLGISHHTLDLSESFCREVMDPFVQAYEQGQTPNPCVLCNRAIKFGALLQA 114

Query: 114 AKTINATLIMTAHTFDDQLE-------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           A+ +   L+ T H    Q+E        +  ++     ++   L  +    L        
Sbjct: 115 AQEMGCPLLATGHYA--QVEQDSGSGRWLLKKALHPDKDQSYVLWTLTQQQLAATRF--- 169

Query: 167 RPFLRCRREDIRSFLLQRNI 186
            P  +  +E+IR+  L++ +
Sbjct: 170 -PLGQLSKEEIRAIALEQGL 188


>gi|224541157|ref|ZP_03681696.1| hypothetical protein CATMIT_00310 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525908|gb|EEF95013.1| hypothetical protein CATMIT_00310 [Catenibacterium mitsuokai DSM
           15897]
          Length = 266

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 48/175 (27%), Gaps = 34/175 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS  LL                  A+++   L      E      +   L 
Sbjct: 15  VMIAFSGGVDSTLLLKMAVEASKK---YHTHVYAVTIQTALHPVM--EADEAKRIAEELG 69

Query: 82  IAHSVVSWKNSKPQTGLM----AAAREARYALISEH---AKTINATLIMTAHTFDDQLET 134
             H V+         G+           +  + ++    A ++  + I+     DD    
Sbjct: 70  AIHKVIHVD-ELEGAGIENNPVDRCYLCKKYMFTKVKELAHSLGISTILEGTNADD---- 124

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNIS 187
                          L      I     L +  P L     +++IR       + 
Sbjct: 125 ---------------LKQYRPGIKAIKELGLHSPLLEANMTKKEIRELAATYGLK 164


>gi|167747719|ref|ZP_02419846.1| hypothetical protein ANACAC_02440 [Anaerostipes caccae DSM 14662]
 gi|167653081|gb|EDR97210.1| hypothetical protein ANACAC_02440 [Anaerostipes caccae DSM 14662]
          Length = 513

 Score = 53.0 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS    + L   +        + + + VDH  LR+   DEV 
Sbjct: 209 IREKVGDGKVLCALSGGVDSSVAAVMLAKAVGK------QLTCVFVDHGLLRKNEGDEVE 262

Query: 72  YV 73
            V
Sbjct: 263 AV 264


>gi|261821429|ref|YP_003259535.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium wasabiae WPP163]
 gi|261605442|gb|ACX87928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium wasabiae WPP163]
          Length = 368

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNW----------EEDDDTEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|227111563|ref|ZP_03825219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
 gi|227327064|ref|ZP_03831088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 368

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNW----------EEDDDTEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|23502454|ref|NP_698581.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis 1330]
 gi|62290471|ref|YP_222264.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700395|ref|YP_414969.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis biovar
           Abortus 2308]
 gi|148559837|ref|YP_001259458.1| tRNA-specific 2-thiouridylase MnmA [Brucella ovis ATCC 25840]
 gi|189024699|ref|YP_001935467.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus S19]
 gi|225628026|ref|ZP_03786062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella ceti str. Cudo]
 gi|225853065|ref|YP_002733298.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis ATCC 23457]
 gi|237815980|ref|ZP_04594977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus str. 2308 A]
 gi|254689772|ref|ZP_05153026.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 6 str.
           870]
 gi|254694261|ref|ZP_05156089.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697916|ref|ZP_05159744.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702309|ref|ZP_05164137.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 5 str. 513]
 gi|254704837|ref|ZP_05166665.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 3 str. 686]
 gi|254708251|ref|ZP_05170079.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis
           M163/99/10]
 gi|254710623|ref|ZP_05172434.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis B2/94]
 gi|254714807|ref|ZP_05176618.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M644/93/1]
 gi|254717867|ref|ZP_05179678.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M13/05/1]
 gi|254730806|ref|ZP_05189384.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 4 str.
           292]
 gi|256032116|ref|ZP_05445730.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis
           M292/94/1]
 gi|256061638|ref|ZP_05451777.1| tRNA-specific 2-thiouridylase MnmA [Brucella neotomae 5K33]
 gi|256114160|ref|ZP_05454914.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160312|ref|ZP_05458006.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M490/95/1]
 gi|256255517|ref|ZP_05461053.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti B1/94]
 gi|256258024|ref|ZP_05463560.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 9 str.
           C68]
 gi|256263452|ref|ZP_05465984.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str.
           63/9]
 gi|256370004|ref|YP_003107515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella microti CCM 4915]
 gi|260169251|ref|ZP_05756062.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. F5/99]
 gi|260547004|ref|ZP_05822743.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038]
 gi|260755305|ref|ZP_05867653.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str.
           870]
 gi|260758526|ref|ZP_05870874.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str.
           292]
 gi|260762350|ref|ZP_05874693.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884320|ref|ZP_05895934.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str.
           C68]
 gi|261214569|ref|ZP_05928850.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str.
           Tulya]
 gi|261219714|ref|ZP_05933995.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1]
 gi|261222726|ref|ZP_05937007.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94]
 gi|261315753|ref|ZP_05954950.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M163/99/10]
 gi|261318196|ref|ZP_05957393.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94]
 gi|261322603|ref|ZP_05961800.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1]
 gi|261325648|ref|ZP_05964845.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33]
 gi|261752876|ref|ZP_05996585.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513]
 gi|261755533|ref|ZP_05999242.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686]
 gi|261758765|ref|ZP_06002474.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99]
 gi|265989227|ref|ZP_06101784.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M292/94/1]
 gi|265995479|ref|ZP_06108036.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998689|ref|ZP_06111246.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1]
 gi|294852904|ref|ZP_06793577.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026]
 gi|297248856|ref|ZP_06932574.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196]
 gi|306843064|ref|ZP_07475687.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO2]
 gi|38258585|sp|Q8CY38|MNMA_BRUSU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71658011|sp|Q57BT1|MNMA_BRUAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123547133|sp|Q2YQB2|MNMA_BRUA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234846|sp|A5VRW1|MNMA_BRUO2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229486334|sp|B2S746|MNMA_BRUA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811446|sp|C0REM2|MNMA_BRUMB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|23348445|gb|AAN30496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella suis 1330]
 gi|62196603|gb|AAX74903.1| TrmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616496|emb|CAJ11563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis biovar Abortus 2308]
 gi|148371094|gb|ABQ61073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella ovis ATCC 25840]
 gi|189020271|gb|ACD72993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus S19]
 gi|225617189|gb|EEH14235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella ceti str. Cudo]
 gi|225641430|gb|ACO01344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis ATCC 23457]
 gi|237789278|gb|EEP63489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella abortus str. 2308 A]
 gi|256000167|gb|ACU48566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella microti CCM 4915]
 gi|260096054|gb|EEW79931.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038]
 gi|260668844|gb|EEX55784.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str.
           292]
 gi|260672782|gb|EEX59603.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675413|gb|EEX62234.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str.
           870]
 gi|260873848|gb|EEX80917.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str.
           C68]
 gi|260916176|gb|EEX83037.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str.
           Tulya]
 gi|260921310|gb|EEX87963.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94]
 gi|260924803|gb|EEX91371.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1]
 gi|261295293|gb|EEX98789.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1]
 gi|261297419|gb|EEY00916.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94]
 gi|261301628|gb|EEY05125.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33]
 gi|261304779|gb|EEY08276.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M163/99/10]
 gi|261738749|gb|EEY26745.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99]
 gi|261742629|gb|EEY30555.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513]
 gi|261745286|gb|EEY33212.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686]
 gi|262553313|gb|EEZ09147.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1]
 gi|262766592|gb|EEZ12381.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str.
           Ether]
 gi|263093459|gb|EEZ17509.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661424|gb|EEZ31685.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis
           M292/94/1]
 gi|294821493|gb|EFG38492.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026]
 gi|297176025|gb|EFH35372.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196]
 gi|306286743|gb|EFM58293.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO2]
 gi|326409608|gb|ADZ66673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis M28]
 gi|326539311|gb|ADZ87526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella melitensis M5-90]
          Length = 398

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 27/193 (13%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 12  PEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLY----DHGAAVHRAGSCCAGQDI 67

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V   L I H V+ ++    +  +   A                   ++A + + A
Sbjct: 68  EDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFADLLQTA 127

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + + A  + T H    +    +    R           +  T    ++ ++  P     +
Sbjct: 128 RDLGADALATGHYIRSRANGAHRALYRPVDTDRDQSYFLFATTQEQID-YLRFPLGHLPK 186

Query: 175 EDIRSFLLQRNIS 187
             +R    +  ++
Sbjct: 187 AQVREIAEELGLT 199


>gi|315651082|ref|ZP_07904116.1| GMP synthase [Eubacterium saburreum DSM 3986]
 gi|315486672|gb|EFU77020.1| GMP synthase [Eubacterium saburreum DSM 3986]
          Length = 517

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 30/197 (15%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E+    ++  V    +L A+SGG DS    + L   + +        + + VDH  LR+
Sbjct: 205 VENSIKAIKEKVGNGKVLCALSGGVDSSVAAVMLSKAVGE------NLTCVFVDHGLLRK 258

Query: 65  TAKDEVRYV-------------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
              DEV  V              +   R     + VS    K +       R     +  
Sbjct: 259 NEGDEVEAVFGPNGNYKLNFIRVNAAERFYSKLAGVSEPEKKRKIIGEEFIR-----VFE 313

Query: 112 EHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           E AK I     ++    + D +E+     +    +    + G+ D + +     I  P  
Sbjct: 314 EEAKKIGKIDFLVQGTIYPDVVESGL-GGESVVIKSHHNVGGLPDYVDFK---EIIEPLR 369

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   L+  I 
Sbjct: 370 DLFKDEVRKAGLELGIP 386


>gi|163789149|ref|ZP_02183592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriales bacterium ALC-1]
 gi|159875562|gb|EDP69623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriales bacterium ALC-1]
          Length = 395

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 38/196 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS      L     +     +K           + +    DE  ++ D 
Sbjct: 2   KRVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMK--------NWHDDSVTISDECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V       +                       RE ++ +  + A
Sbjct: 54  NDAMLVADKLGIPFQTVDLSVQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMDIA 113

Query: 115 KTINATLIMTAHT-FDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             + A  + T H      +E    V  +              +C      L   +  P  
Sbjct: 114 LELGADYVATGHYCRKSTIEKDGKVIHQLLSGADNNKDQSYFLCQLSQAQLAKALF-PIG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R     + +
Sbjct: 173 ELTKPEVREIAKAQGL 188


>gi|281419704|ref|ZP_06250703.1| GMP synthase [Prevotella copri DSM 18205]
 gi|281406233|gb|EFB36913.1| GMP synthase [Prevotella copri DSM 18205]
          Length = 536

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFVETTVAELKEQLGDDKVILGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
           R+    +V    D  C  L +     S K        + P+       R+      +E  
Sbjct: 252 RKNEFRDVM--EDYKCLGLNVIGVDASEKFFADLAGVTDPEKKRKIIGRDFVEVFNAEAK 309

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D++E++      +   K +        +  ++NL +  P     +
Sbjct: 310 KQTGAKWLAQGTIYPDRIESL------NITGKVIKSHHNVGGLPKEMNLQLCEPLKWLFK 363

Query: 175 EDIRSFLLQRNIS 187
           +++R       + 
Sbjct: 364 DEVRRVGRSMGMP 376


>gi|303243667|ref|ZP_07330008.1| Queuosine synthesis-like protein [Methanothermococcus okinawensis
           IH1]
 gi|302485909|gb|EFL48832.1| Queuosine synthesis-like protein [Methanothermococcus okinawensis
           IH1]
          Length = 292

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 21/191 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + ++ F  + +    I+  +SGG DS   L     +  D          +   H      
Sbjct: 26  DIIKNFEENNLKDKKIVSMLSGGKDSSTALHIAKDLGLDVCL------CVHFVHKWSWNL 79

Query: 67  KDEVRYVSDVCSRLRIA--HSVVSWKNSK-----PQTGLMAAAREARYALISEHAKTINA 119
             E      +  +L I      ++    K         +    ++     I E AK   A
Sbjct: 80  AKEQA--KKIADKLDIPIIFYDITGDLKKRTKGAKGGSICRICKDIMKDKIIEIAKDEGA 137

Query: 120 TLIMTAHTFDDQLETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +I+T  T    LE +     +  R+              +    N    RP +RC  +D
Sbjct: 138 EIILTGDTA---LEKISGPIFQHLRETYGTEKFDKMELTPVPKRYNKMFFRPLIRCGYDD 194

Query: 177 IRSFLLQRNIS 187
           +        ++
Sbjct: 195 VIKLKNYYGLN 205


>gi|229015662|ref|ZP_04172648.1| GMP synthase, large subunit [Bacillus cereus AH1273]
 gi|229021854|ref|ZP_04178426.1| GMP synthase, large subunit [Bacillus cereus AH1272]
 gi|228739442|gb|EEL89866.1| GMP synthase, large subunit [Bacillus cereus AH1272]
 gi|228745634|gb|EEL95650.1| GMP synthase, large subunit [Bacillus cereus AH1273]
          Length = 515

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R   KDE   V    S    + +       +      G+            E  Y    E
Sbjct: 259 R---KDEAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|258508963|ref|YP_003171714.1| GMP synthase [Lactobacillus rhamnosus GG]
 gi|257148890|emb|CAR87863.1| GMP synthase [Lactobacillus rhamnosus GG]
 gi|259650257|dbj|BAI42419.1| GMP synthase/glutamine amidotransferase [Lactobacillus rhamnosus
           GG]
          Length = 517

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+    E  
Sbjct: 216 IRAEVGDKRVLLGLSGGVDSSVVGVLLHKAI------GTQLTSIFVDHGLLRKG---EAE 266

Query: 72  YVSDVCS-RLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V D    +  +    V+ K+           P+       R+       E AK      
Sbjct: 267 QVMDSLKGKFGLNIIKVNAKDRFLNDLKGVTDPEKKRKIIGRDFIEVFNEEAAKLNGIEF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  DL   +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVVE------SGTDTAQTIKSHHNVGGLPEDLKFKLIEPLNKLFKDEVRELG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGMPH 387


>gi|242398043|ref|YP_002993467.1| GMP synthase [glutamine-hydrolyzing] subunit B [Thermococcus
           sibiricus MM 739]
 gi|242264436|gb|ACS89118.1| GMP synthase [glutamine-hydrolyzing] subunit B [Thermococcus
           sibiricus MM 739]
          Length = 313

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 109/329 (33%), Gaps = 53/329 (16%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M+   IE     ++  V     ++A+SGG DS    I  +  + DR        A+ V+ 
Sbjct: 7   MWEKFIEEKVKEIKKTVGEKKAIIALSGGVDSSTAAILAYKAIGDR------LHAVFVNT 60

Query: 61  C-LRETAKDEVRYV-SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYAL---I 110
             LR+    E  +V         +    V      +   K  T      +          
Sbjct: 61  GFLRKG---EPEFVIKTFKEEFGLNLIYVDAQERFFTALKGVTDPEEKRKIIGKTFIDVF 117

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E A  I+A  ++      D +E       +   +    + G+ + +    NL +  P  
Sbjct: 118 EEVANEIDADFLIQGTIAPDWIE------SQGKIKSHHNVGGLPERL----NLKLIEPLR 167

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMK 221
              ++++R    +  +         +  + R         VRV   + ++    + +  +
Sbjct: 168 DLYKDEVREVAKELGLP--------EKIYHRMPFPGPGLAVRV---LGEVTPEKVAVVRE 216

Query: 222 KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISL 281
               +  ++ NA       +  +     + +  DI     T+   ++     +    + +
Sbjct: 217 ANAIVEEEIENAGLKPWQAFAVLLGVKTVGVQGDIRAYKETIAVRVVESLDGMTANAMKV 276

Query: 282 PGYRSMERVMLFLKSGKRGCVSIGRVVID 310
           P +  ++R+   + S       +GRV+ D
Sbjct: 277 P-FEVLQRIAFRITSEIP---QVGRVLYD 301


>gi|229553236|ref|ZP_04441961.1| GMP synthase [Lactobacillus rhamnosus LMS2-1]
 gi|258540150|ref|YP_003174649.1| GMP synthase [Lactobacillus rhamnosus Lc 705]
 gi|229313322|gb|EEN79295.1| GMP synthase [Lactobacillus rhamnosus LMS2-1]
 gi|257151826|emb|CAR90798.1| GMP synthase [Lactobacillus rhamnosus Lc 705]
          Length = 517

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+    E  
Sbjct: 216 IRAEVGDKRVLLGLSGGVDSSVVGVLLHKAI------GTQLTSIFVDHGLLRKG---EAE 266

Query: 72  YVSDVCS-RLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V D    +  +    V+ K+           P+       R+       E AK      
Sbjct: 267 QVMDSLKGKFGLNIIKVNAKDRFLNDLKGVTDPEKKRKIIGRDFIEVFNEEAAKLNGIEF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  DL   +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVVE------SGTDTAQTIKSHHNVGGLPEDLKFKLIEPLNKLFKDEVRELG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGMPH 387


>gi|199599149|ref|ZP_03212553.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus rhamnosus HN001]
 gi|199589972|gb|EDY98074.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus rhamnosus HN001]
          Length = 517

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+    E  
Sbjct: 216 IRAEVGDKRVLLGLSGGVDSSVVGVLLHKAI------GTQLTSIFVDHGLLRKG---EAE 266

Query: 72  YVSDVCS-RLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V D    +  +    V+ K+           P+       R+       E AK      
Sbjct: 267 QVMDSLKGKFGLNIIKVNAKDRFLNDLKGVTDPEKKRKIIGRDFIEVFNEEAAKLNGIEF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  DL   +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVVE------SGTDTAQTIKSHHNVGGLPEDLKFKLIEPLNKLFKDEVRELG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGMPH 387


>gi|254437220|ref|ZP_05050714.1| GMP synthase, C-terminal domain protein [Octadecabacter antarcticus
           307]
 gi|198252666|gb|EDY76980.1| GMP synthase, C-terminal domain protein [Octadecabacter antarcticus
           307]
          Length = 507

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V    ++  +SGG DS      LH  + D      + + + VDH  LR   A D +
Sbjct: 203 IREQVGDKQVICGLSGGVDSSVTAALLHEAIGD------QLTCVFVDHGLLRLNEADDVM 256

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------REARYALISEHAKTI-----NA 119
               D      +   V+     +   G +         R+    L  +  +        A
Sbjct: 257 TMFRD-----NMNLKVIYADEKELFLGALEGQSDPETKRKIIGGLFIDVFQKYANKIEGA 311

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V   S        +        +   + L +  P     ++++R+
Sbjct: 312 EFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRA 368

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 369 LGRELGLP 376


>gi|13627050|sp|O85192|GUAA_LACRH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|3483135|gb|AAC33274.1| GMP synthetase [Lactobacillus rhamnosus]
          Length = 517

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+    E  
Sbjct: 216 IRAEVGDKRVLLGLSGGVDSSVVGVLLHKAI------GTQLTSIFVDHGLLRKG---EAE 266

Query: 72  YVSDVCS-RLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V D    +  +    V+ K+           P+       R+       E AK      
Sbjct: 267 QVMDSLKGKFGLNIIKVNAKDRFLNDLRGVTDPEKKRKIIGRDFIEVFNEEAAKLNGIEF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  DL   +  P  +  ++++R   
Sbjct: 327 LAQGTLYTDVVE------SGTDTAQTIKSHHNVGGLPEDLKFKLIEPLNKLFKDEVRELG 380

Query: 182 LQRNISW 188
            +  +  
Sbjct: 381 EKLGMPH 387


>gi|323142835|ref|ZP_08077547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Succinatimonas hippei YIT 12066]
 gi|322417377|gb|EFY07999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Succinatimonas hippei YIT 12066]
          Length = 374

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 38/197 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           +  AH+++ +SGG DS      L         L  +++ +     +         A  + 
Sbjct: 12  LQGAHVVIGLSGGVDSSLSAALLKENGMKVTALFMKNWEEDDTDTVC-------AAAADR 64

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    +++              E +                  A     
Sbjct: 65  EDAQKVCDKLGIELKTINFAAEYWDRVFENFLSEYQAGRTPNPDILCNKEIKFKAFFDYA 124

Query: 114 AKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
              ++A  I T H      +D L    +RS     ++   L  +   +L+     +  P 
Sbjct: 125 LTDLHADFIATGHYAQRSFNDPLAAHLLRSVDKNKDQTYFLHAIGPNVLHK----VLFPV 180

Query: 170 LRCRREDIRSFLLQRNI 186
               +  +R    +R +
Sbjct: 181 GAIEKPQVRLMAEERGL 197


>gi|315171357|gb|EFU15374.1| GMP synthase protein [Enterococcus faecalis TX1342]
          Length = 520

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   L D      + + I VDH  LR+    E  
Sbjct: 216 IREQVGDKKVLLGLSGGVDSSVVGVLLQKALGD------QLTCIFVDHGLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 267 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +   +      I W 
Sbjct: 381 ALGTELGMPDAIVWR 395


>gi|255690530|ref|ZP_05414205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
 gi|260623984|gb|EEX46855.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
          Length = 361

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++ +R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAAR 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  ++   I 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLDCDWIA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R   + G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEEKNGHIYIIAGDDDKKDQSYFLWRLGQDVLRRCIFPLGAY 161

Query: 173 RREDIRSFLLQRN 185
            +  +R +L ++ 
Sbjct: 162 TKIKVREYLAEKG 174


>gi|70606252|ref|YP_255122.1| GMP synthase [Sulfolobus acidocaldarius DSM 639]
 gi|68566900|gb|AAY79829.1| GMP synthase [Sulfolobus acidocaldarius DSM 639]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 25/193 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + I+ V+  +  ++    I  AVSGG DS       + ++ D+         I +D   L
Sbjct: 7   NFIDEVKPQLEKILDGKAIA-AVSGGVDSTTAATLTYKLMGDKVIP------IIIDTGFL 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREAR---YALISEHA 114
           RE    EV  V ++   + +   VV  K       +  +      +  R   Y ++SE  
Sbjct: 60  REG---EVEKVKNMVKNV-LPLQVVDAKEKFLRALEGLSDAEEKRKTFRKIFYDILSELV 115

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  NA  ++      D +ET     Q     +   L  +      +    +  P     +
Sbjct: 116 RKYNAKYLIQGTIAADWVET-----QGGIKTQHNVLVQLGIDTEREWGFKVVEPLADLYK 170

Query: 175 EDIRSFLLQRNIS 187
            ++R       + 
Sbjct: 171 NEVRKLGEYLGLP 183


>gi|304439805|ref|ZP_07399702.1| GMP synthase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371711|gb|EFM25320.1| GMP synthase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 506

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V    +L+A+SGG DS  +   L   + +      + + I VDH L R+   DEV 
Sbjct: 205 IKEKVGDKKVLLALSGGVDSSVVAALLSKAVGE------QLTCIFVDHGLMRKNEGDEVE 258

Query: 72  YV 73
             
Sbjct: 259 AA 260


>gi|205689227|sp|A8MXG8|ABP3L_HUMAN RecName: Full=Putative ATP-binding domain-containing protein 3-like
           protein
          Length = 288

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 28/159 (17%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L   A + +  SGG DS  L   L ++        ++  A+                   
Sbjct: 48  LPPGAVVALGTSGGKDSTVLAHVLRTLAPGLGIL-LQLMAV------------------- 87

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
                 I   +     S  +  + +     R++       ++  + I+  H  DD ++TV
Sbjct: 88  ---DKGIGRGLAGGSQSLLKAHVGSTCGSLRWSKAGF--SSLWVSDIILGHNADDMVDTV 142

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            M   R     G G    C  + +     +  P+   RR
Sbjct: 143 LMNFLRG-GWPGGGALPRCRPLQFASQEVV--PYGHFRR 178


>gi|297620680|ref|YP_003708817.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Waddlia chondrophila WSU 86-1044]
 gi|297375981|gb|ADI37811.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Waddlia chondrophila WSU 86-1044]
          Length = 354

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 48/214 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDEV 70
           ++V +SGG DS    + L                ++                + ++  + 
Sbjct: 5   VVVGLSGGVDSAVAALLLKQQGYSVIGLFMKNWEEKDSDG------------QCSSAADY 52

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
             VS VC  L I +  V++      +                      RE ++ ++ E A
Sbjct: 53  EDVSRVCDLLDIPYYGVNFSQEYWDSVFADCLEEFKKGHTPNPDVLCNREIKFKVLFEKA 112

Query: 115 KTINATLIMTAHTFDDQL---ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           K +    + T H    ++   E   ++      ++   L  +   IL      +  P   
Sbjct: 113 KELGGDYLATGHYCRTRIYEGEAQLLKGADPDKDQSYFLYMIKSDILQS----VLFPIGS 168

Query: 172 CRREDIRSFLLQRNISWC--EDPSNTDDRFERVR 203
             ++++R    + N+     +D +      ER  
Sbjct: 169 LPKKEVREIARRHNLPVHSKKDSTGICFIGERNF 202


>gi|148656262|ref|YP_001276467.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus sp. RS-1]
 gi|205816909|sp|A5UV64|MNMA_ROSS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148568372|gb|ABQ90517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseiflexus sp. RS-1]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 79/252 (31%), Gaps = 60/252 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------- 72
           A I+VA+SGG DS      LH    D        + +++   L E   D +         
Sbjct: 2   AKIMVAMSGGVDSSLAAALLHEAGHD-------VTGVTLH--LWEGDDDRLAESLCCSQE 52

Query: 73  ----VSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISE 112
                  VC++L I + V +++    +  +                    RE ++  +  
Sbjct: 53  MTESARRVCAQLGIPYYVFNYQREFRRYVIEYFLREYASGFTPNPCLECNREIKFRALLA 112

Query: 113 HAKTINATLIMTA-----------HTFDD-------QLETVYMRSQRDYAEKGMGLSGMC 154
            A+T+    + T            H  +D       + +    R  R    +    S M 
Sbjct: 113 RARTLGFDYVATGHYARIRADETRHNGEDAGLPPAERAQRTTYRLLRAVDREKDQ-SYML 171

Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-----RVRVRRFVR 209
             +  D    +  P     + ++R+    R ++    P + D  F      R  +R    
Sbjct: 172 YMLGQDDLARLIFPIGEYTKAEVRAMAAARGLASANRPESQDICFVPGGDYRNLLREERP 231

Query: 210 DIDLHALYLKMK 221
           D       L ++
Sbjct: 232 DALRPGPILDLE 243


>gi|310778027|ref|YP_003966360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
 gi|309747350|gb|ADO82012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
          Length = 356

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 63/203 (31%), Gaps = 42/203 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-----------AK 67
              ++V +SGG DS      L            +   +++ H L +            + 
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKE-------EGYEVIGVTLKH-LSDEDSENTNTKTCCSL 53

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALIS 111
           D++      C +L I H VV       +                        + +   ++
Sbjct: 54  DDIYDAKMACFKLGIPHYVVDAVEPFKKDVIDYFIGEYSKGITPSPCVVCDEKIKIKKLA 113

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           E A  + A  I T H  D     +L +  ++  ++ A+    +       +    L+   
Sbjct: 114 ETADKLGADYISTGHYCDVSYSQELGSHLLKLSKNSAKDQTYMLYRIGENILKRMLF--- 170

Query: 168 PFLRCRREDIRSFLLQRNISWCE 190
           P     ++ +R    +  IS  +
Sbjct: 171 PLKNFEKKKVRGIAKEAGISVHD 193


>gi|291535108|emb|CBL08220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis M50/1]
          Length = 359

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 48/201 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETAK 67
             ++V +SGG DS      L                 +  F + +         L   A 
Sbjct: 4   KKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCC---GLS--AV 58

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           D+ R V+D   RL I + V+++K    +                    A  R  ++  + 
Sbjct: 59  DDARRVAD---RLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALL 115

Query: 112 EHAKTINATLIMTAHTFDDQLETV------YMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
             +  I A  I T H    ++E +         S     ++   L  +    L    +  
Sbjct: 116 NRSLAIGADYIATGHYA--RIEQLSNGRYAIKNSVTAAKDQTYALYNLTQEQLSHTLM-- 171

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P     +++IR    +  +
Sbjct: 172 --PVGAYHKDEIRKIAEEIGL 190


>gi|87307823|ref|ZP_01089966.1| GMP synthase [Blastopirellula marina DSM 3645]
 gi|87289437|gb|EAQ81328.1| GMP synthase [Blastopirellula marina DSM 3645]
          Length = 529

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 65/194 (33%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS  +   L+  +        + S I VD+  LR   K E  
Sbjct: 225 IRERVGDNRVICGLSGGVDSAVVAALLYQAI------GPQLSCILVDNGLLR---KQEAE 275

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISE----HAKTINATL 121
            V ++     +    VV  K+   +     T      R   Y  +        K  +A  
Sbjct: 276 SVIAEFTKHFKTDLHVVDAKDQFLKELAGITEPQEKRRRIGYQFVECFKAEALKIKDAKF 335

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDI 177
           +     + D +E+         A  G      L      +  +L   +  P     ++++
Sbjct: 336 LAQGTLYPDVIES-------GAALDGPAATIKLHHNVGGLPKELGFELIEPLRDLFKDEV 388

Query: 178 RSFLLQRNISWCED 191
           R   L+  +   ED
Sbjct: 389 RKLGLELGLP--ED 400


>gi|154685131|ref|YP_001420292.1| GMP synthase [Bacillus amyloliquefaciens FZB42]
 gi|226738381|sp|A7Z235|GUAA_BACA2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|154350982|gb|ABS73061.1| GuaA [Bacillus amyloliquefaciens FZB42]
          Length = 513

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  +   +H  + D      + + I VDH  L
Sbjct: 203 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAALIHKAIGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 257 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 314 ADKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  + 
Sbjct: 368 FKDEVRALGTELGLP 382


>gi|303255169|ref|ZP_07341245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS455]
 gi|303259175|ref|ZP_07345153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP-BS293]
 gi|303263258|ref|ZP_07349181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS397]
 gi|303265423|ref|ZP_07351323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS457]
 gi|302597999|gb|EFL65069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS455]
 gi|302639593|gb|EFL70050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP-BS293]
 gi|302644863|gb|EFL75110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS457]
 gi|302647031|gb|EFL77255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae BS397]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 ITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|238855258|ref|ZP_04645577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 269-3]
 gi|260664617|ref|ZP_05865469.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
 gi|282932449|ref|ZP_06337874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
 gi|313471923|ref|ZP_07812415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 1153]
 gi|238832150|gb|EEQ24468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 269-3]
 gi|239529151|gb|EEQ68152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 1153]
 gi|260561682|gb|EEX27654.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US]
 gi|281303398|gb|EFA95575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii 208-1]
          Length = 375

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     + +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDDTDDAGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++    Q             R          E ++    E A +++
Sbjct: 61  RVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D    T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYIAMGHYAKTVKDANGVTHMMRPKDGNKDQTYFLSQLSQEQIK----HVIFPLANLTK 176

Query: 175 EDIRSFLLQRNIS 187
             +R    +  ++
Sbjct: 177 PQVREIAEKAGLA 189


>gi|225853749|ref|YP_002735261.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae JJA]
 gi|254811466|sp|C1CBU0|MNMA_STRZJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225723263|gb|ACO19116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae JJA]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 ITLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|184200328|ref|YP_001854535.1| GMP synthase [Kocuria rhizophila DC2201]
 gi|183580558|dbj|BAG29029.1| GMP synthetase [Kocuria rhizophila DC2201]
          Length = 532

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 33/203 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R+ V     L  +SGG DS     A+ + L  R+ G  + + + VDH L 
Sbjct: 212 NIIEEQVAAIRAQVGDGKALCGLSGGVDS-----AVAAALVQRAIGD-RLTCVLVDHGLM 265

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISE 112
           R+   DEV  V  D  +   +   V   ++           P+T   A  RE   A  + 
Sbjct: 266 RQ---DEVEQVEKDYVAATGVKLHVAREQDRFLEALKGVTDPETKRKAIGREFIRAFEAA 322

Query: 113 HAKTINATL--------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
             K + A          ++    + D +E+             +        +  DL   
Sbjct: 323 EEKVLRAEAQDGEPVRFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLQFE 377

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++R+   +  + 
Sbjct: 378 LVEPLRALFKDEVRAVGRELGLP 400


>gi|148983522|ref|ZP_01816841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP3-BS71]
 gi|221231050|ref|YP_002510202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae ATCC 700669]
 gi|254811464|sp|B8ZK04|MNMA_STRPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147923669|gb|EDK74781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP3-BS71]
 gi|220673510|emb|CAR67990.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae ATCC 700669]
 gi|301799298|emb|CBW31824.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae OXC141]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 ITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|254241058|ref|ZP_04934380.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192]
 gi|126194436|gb|EAZ58499.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192]
          Length = 375

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
            ++V +SGG DS    LL+       +  F K             E        A++++ 
Sbjct: 12  RVIVGMSGGVDSSVSALLLLQQGYQVEGLFMK----------NWDEDDGTEYCTAREDLA 61

Query: 72  YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAK 115
               VC R+ I     +     W N          A           RE ++    ++A 
Sbjct: 62  DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A LI T H     D    T  ++      ++   L  +    +         P    
Sbjct: 122 MLGADLIATGHYVRRRDRDGRTELLKGLDPNKDQSYFLHAVGGEQIARS----LFPVGEL 177

Query: 173 RREDIRSFLLQRNIS 187
            + ++R+   +  ++
Sbjct: 178 EKPEVRAIAEKHGLA 192


>gi|325263183|ref|ZP_08129918.1| GMP synthase [Clostridium sp. D5]
 gi|324031576|gb|EGB92856.1| GMP synthase [Clostridium sp. D5]
          Length = 515

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 24/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS    + L   +        + + + VDH  LR+   DEV 
Sbjct: 210 IREKVGTGKVLCALSGGVDSSVAAVMLSEAI------GSQLTCVFVDHGLLRKDEGDEVE 263

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTINA-T 120
            V           + +     +     +A A    E R         +  E A+ I A  
Sbjct: 264 AV--FGPEGHYDLNFIRVNAQERFYSKLAGAVEPEEKRKIIGEEFIRVFEEEAQKIGAVD 321

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+     +    +    + G+ D + +     I  P     ++++R  
Sbjct: 322 FLVQGTIYPDVVESGL-GGESAVIKSHHNVGGLPDYVDFK---EIIEPLRDLFKDEVRKA 377

Query: 181 LLQRNIS 187
            L+  I 
Sbjct: 378 GLELGIP 384


>gi|257791282|ref|YP_003181888.1| GMP synthase, large subunit [Eggerthella lenta DSM 2243]
 gi|257475179|gb|ACV55499.1| GMP synthase, large subunit [Eggerthella lenta DSM 2243]
          Length = 327

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 45/218 (20%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           I+     +R+ +    +L+A+SGG DS  +   L   +        +   + V+H L R+
Sbjct: 23  IDEQMDAIRAQIGDKKVLLALSGGVDSSVVAALLIKAIGK------QLICVHVNHGLMRK 76

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKT 116
              ++V  V    ++L      V   +   +     A  EA+          +  E A+ 
Sbjct: 77  GESEQVVDVFQ--NQLDANLVYVDATDRFLELLDDVAEPEAKRKIIGAEFIRVFEEEARK 134

Query: 117 INATLIMT----------------AHTF-----DD-QLE-----TVYMRSQRDYAEKGMG 149
           +   +                   AH       DD Q E      +  + +     + +G
Sbjct: 135 VGDEVSFLAQGTIYPDILESDGVKAHHNVGGLPDDLQFELCEPVKLLYKDEVRVIGRELG 194

Query: 150 LS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           L  GM +   +       R      R+ + +      I
Sbjct: 195 LPEGMVERQPFPGPGLGVRCLGAITRDRLEALREADAI 232


>gi|167553799|ref|ZP_02347544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205321840|gb|EDZ09679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 368

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 50/198 (25%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L  +        +K               D   Y     
Sbjct: 4   SPKKVIVGMSGGVDSSVSAWLLQQLGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 54  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 113

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 114 FAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 169

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 170 VGELEKPQVRKIAEDLGL 187


>gi|149194572|ref|ZP_01871668.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Caminibacter mediatlanticus TB-2]
 gi|149135316|gb|EDM23796.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Caminibacter mediatlanticus TB-2]
          Length = 511

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 69/185 (37%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++ A+SGG DS      LH  + D+           VD   LR+  ++EV 
Sbjct: 208 IKEEVGDNKVICALSGGVDSSVTAALLHEAIGDKLIPIF------VDTGLLRKNEREEVE 261

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTI-NATLI 122
           +     + L +    V  K+      K  T      +   +       E AK   +A  +
Sbjct: 262 HAFK--NVLHVPLITVDAKDKFLSRLKGVTDPEEKRKIIGHTFIEVFDEEAKKHKDAKFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ + + ++    +  P     ++++R   L
Sbjct: 320 AQGTLYPDVIESVSVKGPSKTIKSHHNVGGLPEWMKFE----LIEPLRELFKDEVRKLGL 375

Query: 183 QRNIS 187
           +  + 
Sbjct: 376 ELGLP 380


>gi|15900060|ref|NP_344664.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae TIGR4]
 gi|111656982|ref|ZP_01407790.1| hypothetical protein SpneT_02001784 [Streptococcus pneumoniae
           TIGR4]
 gi|225860166|ref|YP_002741675.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229174|ref|ZP_06962855.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255779|ref|ZP_06979365.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501928|ref|YP_003723868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|24638327|sp|Q97T38|MNMA_STRPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811468|sp|C1CP03|MNMA_STRZT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|14971585|gb|AAK74304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae TIGR4]
 gi|225726555|gb|ACO22406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237523|gb|ADI68654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327390539|gb|EGE88879.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA04375]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 ITLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRRLAEEAGLS 189


>gi|295702455|ref|YP_003595530.1| GMP synthase [Bacillus megaterium DSM 319]
 gi|294800114|gb|ADF37180.1| GMP synthase (glutamine-hydrolyzing) [Bacillus megaterium DSM 319]
          Length = 509

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + + VDH  L
Sbjct: 199 NFIEVEMDKIRETVGDRKVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFVDHGLL 252

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    +  K+         S P+        E  Y    E
Sbjct: 253 RKG---EAESVMETFSEGFNMNVIKIDAKDRFLEKLNGVSDPEQKRKIIGNEFIYVFDDE 309

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      +     + D +E            + +        +  D+   +  P    
Sbjct: 310 AAKLKGFDFLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 363

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 364 FKDEVRALGSELGIP 378


>gi|294497090|ref|YP_003560790.1| GMP synthase [Bacillus megaterium QM B1551]
 gi|294347027|gb|ADE67356.1| GMP synthase (glutamine-hydrolyzing) [Bacillus megaterium QM B1551]
          Length = 506

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + + VDH  L
Sbjct: 196 NFIEVEMDKIRETVGDRKVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFVDHGLL 249

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    +  K+         S P+        E  Y    E
Sbjct: 250 RKG---EAESVMETFSEGFNMNVIKIDAKDRFLEKLNGVSDPEQKRKIIGNEFIYVFDDE 306

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      +     + D +E            + +        +  D+   +  P    
Sbjct: 307 AAKLKGFDFLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 360

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 361 FKDEVRALGSELGIP 375


>gi|229918430|ref|YP_002887076.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sp. AT1b]
 gi|229469859|gb|ACQ71631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Exiguobacterium sp. AT1b]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 42/194 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++V +SGG DS      L         +         +    +        A ++   V 
Sbjct: 13  VVVGMSGGVDSSVTAHVLKEQGYNVIGIFMKNWDDTDENGVCT--------ATEDYEDVI 64

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAKTIN 118
            V +++ I +  V+++             E R                +    +HA  + 
Sbjct: 65  AVANQIGIPYYAVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDHALRLG 124

Query: 119 ATLIMTAHTFDDQL-----ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  + T H    Q+     E   +R + D  ++   L+ +    L         P     
Sbjct: 125 ADFVATGHYA--QVKYVDGEHRLLRGKDDNKDQTYFLNQLSQDQLARTMF----PIGHMD 178

Query: 174 REDIRSFLLQRNIS 187
           ++D+R+   +  ++
Sbjct: 179 KKDVRAIAEEAGLA 192


>gi|157813152|gb|ABV81321.1| putative GMP synthetase [Triops longicaudatus]
          Length = 197

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           ++R+ V    +L+ VSGG DS      LH  L  +     +  A+ +D+  LR    DE 
Sbjct: 36  YIRNAVGGKQVLMLVSGGVDSTVCAALLHKALPQQ-----QVIAVHIDNGFLR---LDES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V      L +   VV 
Sbjct: 88  EQVEVSLRALGLELQVVK 105


>gi|254829729|ref|ZP_05234384.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 10403S]
          Length = 371

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIDIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H        D++E   +R   +  ++   L+ +      D    +  P    
Sbjct: 121 GADYVATGHYAQVKKVGDEIE--LLRGVDNNKDQTYFLNQLSQ----DQLKKVMFPLGAM 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  ++
Sbjct: 175 EKTEVREIAKKAGLA 189


>gi|302783631|ref|XP_002973588.1| hypothetical protein SELMODRAFT_54556 [Selaginella moellendorffii]
 gi|300158626|gb|EFJ25248.1| hypothetical protein SELMODRAFT_54556 [Selaginella moellendorffii]
          Length = 337

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 38/201 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCL-----RETAKD 68
             IL+  SGG  S   L  L  + S+       +        + +D  L     RE    
Sbjct: 48  DRILLGFSGGPSSRVALEFLAEIRSEALASRALNAPGFGLGVVFIDEGLAIGTSREERSH 107

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN--------------------SKPQTGLMAAAREARYA 108
            V  V  + SRL +   V   +                      K  TG        R  
Sbjct: 108 AVDVVEKIVSRLELPLVVRRLEEVFDDDNQEDCSTQLKNLLDSVKDGTGKEDIVEILRME 167

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--IS 166
           L+ + AK    T ++          T           KG G +        D      + 
Sbjct: 168 LLEQVAKKEGYTKLVLG-----LSTTRIAARVVSATAKGQGFALAAGVQYVDSRWHAPVV 222

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P   C  +++       ++ 
Sbjct: 223 LPLRDCATKELALLCHFFHLE 243


>gi|251771882|gb|EES52456.1| GMP synthase [glutamine-hydrolyzing] [Leptospirillum
           ferrodiazotrophum]
          Length = 513

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V   H++ A+SGG DS    +  H  L +R      F A  VD+  LR+    E+ 
Sbjct: 210 IRARVGTDHLICALSGGIDSTVTALLCHRALGER------FHAFFVDNGLLRKNELPEME 263

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
              D+ S L I   ++  ++         + P+       R      + E  +      +
Sbjct: 264 --RDL-SSLGIPLEIIDARDLFLDRLKGVADPEKKRKTIGRTFIDVFVREARRRGTYRYL 320

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +   +  P     ++++R    
Sbjct: 321 AQGTLYPDVIESV---SSFGGPSAVIKSHHNVGGLPKRMPFELVEPLRELFKDEVRRLGR 377

Query: 183 QRNIS 187
           +  +S
Sbjct: 378 ELGLS 382


>gi|253570358|ref|ZP_04847767.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6]
 gi|205814939|sp|Q8A0Y3|MNMA3_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3
 gi|251840739|gb|EES68821.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6]
          Length = 362

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++ +R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAAR 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  ++   I 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDCAYIA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R     G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEERSGHIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDY 161

Query: 173 RREDIRSFLLQRN 185
            +  +R +L ++ 
Sbjct: 162 TKIKVREYLAEKG 174


>gi|52079121|ref|YP_077912.1| GMP synthase [Bacillus licheniformis ATCC 14580]
 gi|52784488|ref|YP_090317.1| GMP synthase [Bacillus licheniformis ATCC 14580]
 gi|319647105|ref|ZP_08001331.1| GMP synthase [Bacillus sp. BT1B_CT2]
 gi|81386308|sp|Q65MU0|GUAA_BACLD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52002332|gb|AAU22274.1| GMP synthetase [Bacillus licheniformis ATCC 14580]
 gi|52346990|gb|AAU39624.1| GuaA [Bacillus licheniformis ATCC 14580]
 gi|317390929|gb|EFV71730.1| GMP synthase [Bacillus sp. BT1B_CT2]
          Length = 513

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 203 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 257 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 314 AEKLKGIDFLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 368 FKDEVRALGTELGIP 382


>gi|322391188|ref|ZP_08064660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus peroris ATCC 700780]
 gi|321145941|gb|EFX41330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus peroris ATCC 700780]
          Length = 453

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 85  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 136

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 137 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 196

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  + T H      D   E   +   R      ++   LS +    L         
Sbjct: 197 MTLGADYVATGHYARVARD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 249

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 250 PLGHLEKPEVRKIAEEAGLA 269


>gi|84684953|ref|ZP_01012853.1| GMP synthase (glutamine-hydrolyzing) [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667288|gb|EAQ13758.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacterales bacterium
           HTCC2654]
          Length = 526

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  +H++  +SGG DS    + LH  + D      + + + VDH  LR     E  
Sbjct: 222 IREQVGSSHVICGLSGGVDSSVTAVLLHEAIGD------QLTCVFVDHGLLRLN---EAE 272

Query: 72  YVSDVCSRL---RIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
            V  +       ++ H+  S  +             R+    L  +  +       +A  
Sbjct: 273 EVVTMFRDHYNMKLIHADESDLFLGELEGVSDPEQKRKTIGKLFIDVFQKYASEIEDADF 332

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 333 LAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALG 389

Query: 182 LQRNIS 187
            +  + 
Sbjct: 390 HELGLP 395


>gi|148547054|ref|YP_001267156.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida F1]
 gi|166235073|sp|A5W1G2|MNMA_PSEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148511112|gb|ABQ77972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida F1]
          Length = 374

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
                ++V +SGG DS    LL+       +  F K             E        A+
Sbjct: 9   PAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMK----------NWEEDDGTEYCTAR 58

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
           +++     VC R+ I     +     W N          A           RE ++    
Sbjct: 59  EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFL 118

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           ++A ++ A LI T H     D    T  ++      ++   L  +    +         P
Sbjct: 119 DYALSLGADLIATGHYVRRRDTGALTELLKGLDPNKDQSYFLHAVGGQEIART----LFP 174

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 175 VGELEKPEVRAIAEKHGLA 193


>gi|114332296|ref|YP_748518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas eutropha C91]
 gi|122313046|sp|Q0ADM9|MNMA_NITEC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114309310|gb|ABI60553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas eutropha C91]
          Length = 361

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 56/199 (28%), Gaps = 46/199 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
            + ++V +SGG DS    + L     D     +K               D   Y      
Sbjct: 3   KSRVVVGMSGGVDSSVAALLLKQQGYDVIGLFMKNW----------EDDDTDEYCSSRKD 52

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
               + V   L I    V++     +           A R          E ++    +H
Sbjct: 53  FLDAASVADILDIPLEAVNFSAEYRERVFSLFLAEYQAGRTPNPDVLCNSEIKFKAFLDH 112

Query: 114 AKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A  + A  I T H       + Q +   ++ +    ++   L  +    L         P
Sbjct: 113 ALALGADWIATGHYAQVHEINGQFQ--LLKGEDGNKDQSYFLYRLNQQQLSRT----IFP 166

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R    +  + 
Sbjct: 167 IGHLYKREVRKIAHKHGLP 185


>gi|315126737|ref|YP_004068740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas sp. SM9913]
 gi|315015251|gb|ADT68589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas sp. SM9913]
          Length = 366

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 38/130 (29%), Gaps = 32/130 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A ++++  
Sbjct: 8   KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNDEYCAAAEDLKDA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC +L I    V++             A  +  R               A +   A+ 
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQA 119

Query: 117 INATLIMTAH 126
           + A  I T H
Sbjct: 120 LGADFIATGH 129


>gi|253688256|ref|YP_003017446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259495833|sp|C6DFW7|MNMA_PECCP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|251754834|gb|ACT12910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 368

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNW----------EEDDDTEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|217967082|ref|YP_002352588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus turgidum DSM 6724]
 gi|217336181|gb|ACK41974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus turgidum DSM 6724]
          Length = 343

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 36/187 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + V +SGG DS      L           +  +          ++  + + V++    L
Sbjct: 4   KVAVGMSGGVDSSITAYLLKK--EGYEVIGLTMNIAY------SSSIKDAKKVAEY---L 52

Query: 81  RIAHSVVSWKNSKPQT---------------GLMAAAREA-RYALISEHAKTINATLIMT 124
            I H  V  KN   +                       +  ++ L+ E AK + A  + T
Sbjct: 53  NIPHFFVDLKNEFEEKIIKYFVESYKHGYTPNPCVFCNKLIKFGLLLEKAKELGADFLST 112

Query: 125 AHTF----DDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            H      D++ +T + MR++    ++   L  +    +         P     +E++R 
Sbjct: 113 GHYVRKVWDEERKTYLLMRAKDLKKDQSYFLGMLTQEQIKKT----LFPLGELTKEEVRK 168

Query: 180 FLLQRNI 186
              +  I
Sbjct: 169 IADELGI 175


>gi|331701087|ref|YP_004398046.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128430|gb|AEB72983.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL
           B-30929]
          Length = 374

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS  +   L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++     +  T  +   ++ R             +    ++A  +
Sbjct: 60  AKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALEL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  I T H    T D       +R+     ++   LS +      D    +  P     
Sbjct: 120 GADYIATGHYAQLTRDADGHNHLLRASDGNKDQTYFLSQLSA----DQLDRVMFPIGNLV 175

Query: 174 REDIRSFLLQRNIS 187
           + D+R    +  ++
Sbjct: 176 KPDVRKIAREAGLA 189


>gi|315167394|gb|EFU11411.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX1341]
          Length = 278

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 85/279 (30%), Gaps = 72/279 (25%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            VR L     + VA SGG DS  LL  AL ++ ++         A+ V+  L   + DE 
Sbjct: 11  LVRELQKMDKLAVAYSGGIDSSYLLKKALDTLGAE------NVLAVVVNSEL--FSDDEF 62

Query: 71  RYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               D+ + L            +      + P +   +   +  Y  I    +     ++
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIVANNPNSWFYSK--KLLYKTIRSAIQKEGFDVL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSF 180
                 DD   T +    R   ++G                 +  P   ++  + +IR  
Sbjct: 121 ADGMIMDDN--TDFRPGLRARDQEG-----------------VISPLQQVKLYKIEIRQL 161

Query: 181 LLQRNISWC----------------------EDPSNTDDRFER------VRVR--RFVRD 210
                IS                         D     +++ R      VRVR    +  
Sbjct: 162 AKDAGISNWSKVASCSIASRIPYGIKLTRSAIDQVFASEKYLREIGFPIVRVRAHHDLAR 221

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           I++     K+    + R K+ + +      Y+T  +   
Sbjct: 222 IEIPE--DKLSLLLENREKIADYLKKQGFNYVTFDLEGF 258


>gi|314969849|gb|EFT13947.1| GMP synthase protein [Propionibacterium acnes HL037PA1]
          Length = 517

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALSGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|170746885|ref|YP_001753145.1| GMP synthase [Methylobacterium radiotolerans JCM 2831]
 gi|170653407|gb|ACB22462.1| GMP synthase, large subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 518

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 59/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR     E  
Sbjct: 214 IREQVGSEKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLLRLG---EAE 264

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      I    V             S P+       R       +E  K   A  
Sbjct: 265 QVVALFRDHYNIPLVHVEASGMFLAALEGVSDPEIKRKTIGRLFIDVFEAESKKIGGAKF 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 325 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRVLG 381

Query: 182 LQRNIS 187
            +  + 
Sbjct: 382 KELGLP 387


>gi|22125693|ref|NP_669116.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis KIM 10]
 gi|45441579|ref|NP_993118.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51596752|ref|YP_070943.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP
           32953]
 gi|108807881|ref|YP_651797.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Antiqua]
 gi|108812155|ref|YP_647922.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Nepal516]
 gi|145599092|ref|YP_001163168.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Pestoides F]
 gi|149366398|ref|ZP_01888432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis CA88-4125]
 gi|162421419|ref|YP_001607233.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Angola]
 gi|165925423|ref|ZP_02221255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165938528|ref|ZP_02227085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008070|ref|ZP_02228968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211105|ref|ZP_02237140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401703|ref|ZP_02307194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421866|ref|ZP_02313619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426312|ref|ZP_02318065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167470788|ref|ZP_02335492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis FV-1]
 gi|170023961|ref|YP_001720466.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis
           YPIII]
 gi|186895819|ref|YP_001872931.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928774|ref|YP_002346649.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis CO92]
 gi|229841625|ref|ZP_04461783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843742|ref|ZP_04463885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229894486|ref|ZP_04509668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Pestoides A]
 gi|229902476|ref|ZP_04517595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Nepal516]
 gi|270490345|ref|ZP_06207419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis KIM D27]
 gi|294504164|ref|YP_003568226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Z176003]
 gi|24638321|sp|Q8ZFQ5|MNMA_YERPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|73920130|sp|Q669Q4|MNMA_YERPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122980130|sp|Q1CI58|MNMA_YERPN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123245748|sp|Q1C6S0|MNMA_YERPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828988|sp|B2K711|MNMA_YERPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828989|sp|A9R0L5|MNMA_YERPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828990|sp|A4TLN3|MNMA_YERPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828991|sp|B1JI67|MNMA_YERPY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21958608|gb|AAM85367.1|AE013782_8 hypothetical protein y1799 [Yersinia pestis KIM 10]
 gi|45436440|gb|AAS61995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51590034|emb|CAH21668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis IP 32953]
 gi|108775803|gb|ABG18322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Nepal516]
 gi|108779794|gb|ABG13852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Antiqua]
 gi|115347385|emb|CAL20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis CO92]
 gi|145210788|gb|ABP40195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Pestoides F]
 gi|149290772|gb|EDM40847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis CA88-4125]
 gi|162354234|gb|ABX88182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Angola]
 gi|165913643|gb|EDR32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922532|gb|EDR39683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992452|gb|EDR44753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166208285|gb|EDR52765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960351|gb|EDR56372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167048808|gb|EDR60216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054667|gb|EDR64471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|169750495|gb|ACA68013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis YPIII]
 gi|186698845|gb|ACC89474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis PB1/+]
 gi|229680522|gb|EEO76619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Nepal516]
 gi|229689350|gb|EEO81413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694088|gb|EEO84136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229703505|gb|EEO90522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Pestoides A]
 gi|262362281|gb|ACY59002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis D106004]
 gi|262366214|gb|ACY62771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis D182038]
 gi|270338849|gb|EFA49626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis KIM D27]
 gi|294354623|gb|ADE64964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pestis Z176003]
 gi|320014781|gb|ADV98352.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 371

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDDEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++             A  +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVDGKSRLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q ++
Sbjct: 173 ELEKPEVRRIAEQLDL 188


>gi|315427307|dbj|BAJ48918.1| GMP synthase (glutamine-hydrolysing) [Candidatus Caldiarchaeum
           subterraneum]
 gi|315428189|dbj|BAJ49773.1| GMP synthase (glutamine-hydrolysing) [Candidatus Caldiarchaeum
           subterraneum]
          Length = 510

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 25/194 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E     V  +V P  +L AVSGG DS      +   +  R         + V+H  LR+
Sbjct: 199 LEKAVSEVVEVVGPGRVLCAVSGGIDSTVTAAIVSKAVGKR------LKCLFVNHGLLRK 252

Query: 65  TA-KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAKTI 117
              +  +  +  +     I +   S +      G++    + R       A+  E +K  
Sbjct: 253 NEPEKVLETLRKIVGEDNIIYIDASERFLNRLRGVVDPEEKRRIIGHEFAAIFEEVSKAY 312

Query: 118 N-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCR 173
              T +     + D +E+         +  G  +         +  +  + +  P     
Sbjct: 313 GPFTHLAQGTLYPDVVES-------GKSVGGSAVIKTHHNVGGMPQNFGMKLVEPLRELY 365

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 366 KDEVRQLAEMMGLP 379


>gi|229917939|ref|YP_002886585.1| GMP synthase, large subunit [Exiguobacterium sp. AT1b]
 gi|229469368|gb|ACQ71140.1| GMP synthase, large subunit [Exiguobacterium sp. AT1b]
          Length = 513

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R +V    +L A+SGG DS  +   +H  + D      + + + VDH L R+   D V 
Sbjct: 212 IREIVGDKQVLCALSGGVDSSVVAALVHRAIGD------QLTCMFVDHGLLRKGEADSVM 265

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
                     +    +  +          S P+        E  Y    E +K ++   +
Sbjct: 266 --KTFADGFNMKVIKIDAQERFLTKLAGVSDPEQKRKIIGNEFIYVFDEEASKLVDMDFL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+N  +  P     ++++R+   
Sbjct: 324 AQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDMNFTLIEPLNTLFKDEVRALGT 377

Query: 183 QRNIS 187
           +  + 
Sbjct: 378 ELGLP 382


>gi|262405518|ref|ZP_06082068.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294646343|ref|ZP_06723990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294806678|ref|ZP_06765509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|262356393|gb|EEZ05483.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|292638298|gb|EFF56669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CC 2a]
 gi|294446098|gb|EFG14734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295086173|emb|CBK67696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens XB1A]
          Length = 379

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 30/185 (16%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS     A+  + +      + F    ++      + + +    ++  R
Sbjct: 6   KRVLLGMSGGTDSSV--AAMRLLEAGYEVIGVTFRFYELN-----GSTEYLEDARNLAER 58

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIM 123
           L I H     +    +  +        A R            ++ L+++ A  +    I 
Sbjct: 59  LGIRHITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGIFYIA 118

Query: 124 TAH-TFDDQL-ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T H   + QL ET Y+    D  +     L G+   IL  +      P     + + R++
Sbjct: 119 TGHYAQNIQLNETFYITYAADSDKDQTFFLWGLKQDILNRM----LLPMGDITKAEARAW 174

Query: 181 LLQRN 185
             +  
Sbjct: 175 AAEHG 179


>gi|225857998|ref|YP_002739508.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae 70585]
 gi|254811463|sp|C1CAE7|MNMA_STRP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225721738|gb|ACO17592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae 70585]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|225571441|ref|ZP_03780437.1| hypothetical protein CLOHYLEM_07539 [Clostridium hylemonae DSM
           15053]
 gi|225159917|gb|EEG72536.1| hypothetical protein CLOHYLEM_07539 [Clostridium hylemonae DSM
           15053]
          Length = 515

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 201 SFVEESIRSIREKVGSGKVLCALSGGVDSSVAAVMLSKAI------GSQLTCVFVDHGLL 254

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 255 RKNEGDEVEAV 265


>gi|205829101|sp|B2IRK2|MNMA_STRPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|182683091|ref|YP_001834838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CGSP14]
 gi|182628425|gb|ACB89373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CGSP14]
          Length = 391

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 23  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 74

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 75  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 134

Query: 115 KTINATLIMTAHTF---DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 135 MTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 190

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 191 HLEKPEVRKLAEEAGLS 207


>gi|168492409|ref|ZP_02716552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183573402|gb|EDT93930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC0288-04]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|168487074|ref|ZP_02711582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1087-00]
 gi|183570004|gb|EDT90532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1087-00]
 gi|332202053|gb|EGJ16122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA41317]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|153875033|ref|ZP_02003007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Beggiatoa sp. PS]
 gi|152068503|gb|EDN66993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Beggiatoa sp. PS]
          Length = 359

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 33/130 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
            ++V +SGG DS    + L           + +      +      ++C   +A ++VR 
Sbjct: 2   KVIVGMSGGVDSSVAALLLKKQGYEVQGLFMKNWEEDDTE------NYC---SAAEDVRD 52

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC  L I    V+     W N          A           RE ++ +  EHA  
Sbjct: 53  AQAVCDTLEIPLHTVNFATEYWDNVFTHCLQEYQAGRTPNPDILCNREIKFKVFLEHALH 112

Query: 117 INATLIMTAH 126
           +    I T H
Sbjct: 113 LGGKAIATGH 122


>gi|149001781|ref|ZP_01826754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS69]
 gi|147760239|gb|EDK67228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP14-BS69]
          Length = 266

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|149005874|ref|ZP_01829603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP18-BS74]
 gi|225855906|ref|YP_002737417.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae P1031]
 gi|237649790|ref|ZP_04524042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237821488|ref|ZP_04597333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|307126353|ref|YP_003878384.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae 670-6B]
 gi|254811467|sp|C1CI29|MNMA_STRZP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147762230|gb|EDK69191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP18-BS74]
 gi|225725914|gb|ACO21766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae P1031]
 gi|306483415|gb|ADM90284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae 670-6B]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|149010994|ref|ZP_01832299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP19-BS75]
 gi|147764630|gb|EDK71560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP19-BS75]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRKLAEEAGLS 189


>gi|26990719|ref|NP_746144.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida KT2440]
 gi|37999625|sp|Q88FR9|MNMA_PSEPK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24985713|gb|AAN69608.1|AE016594_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas putida KT2440]
          Length = 374

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
                ++V +SGG DS    LL+       +  F K             E        A+
Sbjct: 9   PAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMK----------NWEEDDGTEYCTAR 58

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
           +++     VC R+ I     +     W N          A           RE ++    
Sbjct: 59  EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFL 118

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           ++A ++ A LI T H     D    T  ++      ++   L  +    +         P
Sbjct: 119 DYALSLGADLIATGHYVRRRDTGALTELLKGLDPNKDQSYFLHAVGGQEIART----LFP 174

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 175 VGELEKPEVRAIAEKHGLA 193


>gi|115525265|ref|YP_782176.1| GMP synthase [Rhodopseudomonas palustris BisA53]
 gi|115519212|gb|ABJ07196.1| GMP synthase (glutamine-hydrolyzing) [Rhodopseudomonas palustris
           BisA53]
          Length = 561

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 66/188 (35%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR   KDE R
Sbjct: 257 IRGQVGQGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLLR---KDEAR 307

Query: 72  YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NA 119
            V D+      I    V    +K   G +       + R         +    AK I  A
Sbjct: 308 SVVDLFRHHYNIPL--VHVDAAKLFLGQLDGVTDPEQKRKIIGKLFIDVFEGEAKMIGGA 365

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V   S        +        +   +N+ +  P     ++++R 
Sbjct: 366 DFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPARMNMKLVEPLRELFKDEVRV 422

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 423 LGKELGLP 430


>gi|254797216|ref|YP_003082057.1| GMP synthase, glutamine-hydrolyzing [Neorickettsia risticii str.
           Illinois]
 gi|254590466|gb|ACT69828.1| GMP synthase, glutamine-hydrolyzing [Neorickettsia risticii str.
           Illinois]
          Length = 519

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 25/191 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E  +  V +    A +L AVSGG DS      +H  + +R         I VD   LR+ 
Sbjct: 204 EEEKRIVVATTGDAGVLAAVSGGVDSTVAAKFMHGAIGER------LHCIFVDTGLLRKN 257

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKT 116
              E   V +  S L I   +V   +           P+                E  K 
Sbjct: 258 ---EANEVKESFSSLGIPLKIVFAADRFFKKLAGVTDPEQKRKIVGETFIQVFEEEALKI 314

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E              +        +   + L +  PF    +++
Sbjct: 315 QGVEFLLQGTLYPDVIE------SGGGGSHTIKSHHNVGGLPEKMGLKLLEPFRLLFKDE 368

Query: 177 IRSFLLQRNIS 187
           +R+   Q  +S
Sbjct: 369 VRAIGRQLGVS 379


>gi|239832470|ref|ZP_04680799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ochrobactrum intermedium LMG 3301]
 gi|239824737|gb|EEQ96305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ochrobactrum intermedium LMG 3301]
          Length = 411

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 27/193 (13%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 25  PEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLY----DHGAAVHRAGSCCAGQDI 80

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V   L I H V+ ++    +  +   A                   ++A + + A
Sbjct: 81  EDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFADLLQTA 140

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + + A  + T H    +    +    R           +  T    ++ ++  P     +
Sbjct: 141 RDLGADALATGHYIRSRANGAHRALYRPVDTDRDQSYFLFATTQEQID-YLRFPLGHLPK 199

Query: 175 EDIRSFLLQRNIS 187
             +R    +  ++
Sbjct: 200 AQVREIAEEMGLT 212


>gi|148987860|ref|ZP_01819323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP6-BS73]
 gi|148992708|ref|ZP_01822351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP9-BS68]
 gi|149017799|ref|ZP_01834258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP23-BS72]
 gi|168489391|ref|ZP_02713590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP195]
 gi|168493828|ref|ZP_02717971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC3059-06]
 gi|147926324|gb|EDK77397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147928434|gb|EDK79449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP9-BS68]
 gi|147931363|gb|EDK82341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP23-BS72]
 gi|183572139|gb|EDT92667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP195]
 gi|183576137|gb|EDT96665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC3059-06]
 gi|301793411|emb|CBW35778.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae INV104]
 gi|332075800|gb|EGI86267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA17570]
 gi|332076573|gb|EGI87035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA17545]
 gi|332204143|gb|EGJ18208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA47901]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRRLAEEAGLS 189


>gi|148996542|ref|ZP_01824260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP11-BS70]
 gi|307066804|ref|YP_003875770.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Streptococcus pneumoniae AP200]
 gi|147757117|gb|EDK64156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae SP11-BS70]
 gi|306408341|gb|ADM83768.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus pneumoniae AP200]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  +S
Sbjct: 173 HLEKPEVRRLAEEAGLS 189


>gi|317491853|ref|ZP_07950288.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920287|gb|EFV41611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 367

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 53/197 (26%), Gaps = 43/197 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDNEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D    T  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADYIATGHYVRRRDIDGTTQLLRGVDTNKDQSYFLYTLSHEQVAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    Q +++
Sbjct: 173 ELEKPEVRKIAEQLDLA 189


>gi|153950153|ref|YP_001400589.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP
           31758]
 gi|205828987|sp|A7FH61|MNMA_YERP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152961648|gb|ABS49109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia pseudotuberculosis IP 31758]
          Length = 371

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDDEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++             A  +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVDGKSRLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q ++
Sbjct: 173 ELEKPEVRRIAEQLDL 188


>gi|84516251|ref|ZP_01003611.1| GMP synthase (glutamine-hydrolyzing) [Loktanella vestfoldensis
           SKA53]
 gi|84509947|gb|EAQ06404.1| GMP synthase (glutamine-hydrolyzing) [Loktanella vestfoldensis
           SKA53]
          Length = 519

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 21/192 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E     +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR+ 
Sbjct: 209 EQAIAAIREQVGDKQVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRQG 262

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI---- 117
             +EV  V+      ++       K                R+    L  +  +      
Sbjct: 263 EAEEV--VTMFRDHYQMPLIHADEKELFLGKLDGVSDPETKRKIIGGLFIDVFQKYANGI 320

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+V   S        +        +   + L +  P     +++
Sbjct: 321 EGAEFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDE 377

Query: 177 IRSFLLQRNISW 188
           +R+   +  +  
Sbjct: 378 VRALGAELGLPP 389


>gi|254519285|ref|ZP_05131341.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA]
 gi|226913034|gb|EEH98235.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA]
          Length = 360

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 54/206 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------ 72
              ++V +SGG DS      L     ++ +  I  +    D        ++  Y      
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLK----EQGYEVIGVTMKHFD-------DEDEDYIEREGG 50

Query: 73  ---------VSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-ARY 107
                       V  +L I   V+++K+S  +                    A  +  ++
Sbjct: 51  CCSLSSVEDARRVADKLGIPFYVLNFKDSFKEKVIDYFVQEYMEGKTPNPCIACNKHIKF 110

Query: 108 ALISEHAKTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDL 161
                 AK I A  + T H    ++E       + +++  D  ++   L       L   
Sbjct: 111 DEFLRRAKGIGADYVATGHYA--KIEKNEDGRYLLIKADDDKKDQTYALYNFTQEQLSQT 168

Query: 162 NLWISRPFLRCRREDIRSFLLQRNIS 187
            +    P     ++ IR    +  ++
Sbjct: 169 LM----PCGDYTKDKIREIAKEIGLA 190


>gi|229827773|ref|ZP_04453842.1| hypothetical protein GCWU000182_03165 [Abiotrophia defectiva ATCC
           49176]
 gi|229787972|gb|EEP24086.1| hypothetical protein GCWU000182_03165 [Abiotrophia defectiva ATCC
           49176]
          Length = 514

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS    + L   +        + + + VDH  LR+   DEV 
Sbjct: 209 IREKVGNGKVLCALSGGVDSSVAAVLLSKAVGK------QLTCVFVDHGLLRKNEGDEVE 262

Query: 72  YV 73
            V
Sbjct: 263 AV 264


>gi|168483769|ref|ZP_02708721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1873-00]
 gi|172042905|gb|EDT50951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae CDC1873-00]
 gi|332203292|gb|EGJ17359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae GA47368]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTF---DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
             ++ ++R    +  +S
Sbjct: 173 HLKKPEVRKLAEEAGLS 189


>gi|15902166|ref|NP_357716.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae R6]
 gi|15457661|gb|AAK98926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae R6]
          Length = 391

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 23  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 74

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 75  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 134

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 135 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 190

Query: 171 RCRREDIRSFLLQRNIS 187
             ++ ++R    +  +S
Sbjct: 191 HLKKPEVRKLAEEAGLS 207


>gi|116516757|ref|YP_815643.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae D39]
 gi|30173410|sp|Q8CWW0|MNMA_STRR6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122279467|sp|Q04MV1|MNMA_STRP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116077333|gb|ABJ55053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae D39]
          Length = 373

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
             ++ ++R    +  +S
Sbjct: 173 HLKKPEVRKLAEEAGLS 189


>gi|90424556|ref|YP_532926.1| GMP synthase [Rhodopseudomonas palustris BisB18]
 gi|122475962|sp|Q212S9|GUAA_RHOPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|90106570|gb|ABD88607.1| GMP synthase (glutamine-hydrolyzing) [Rhodopseudomonas palustris
           BisB18]
          Length = 535

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 62/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR   KDE +
Sbjct: 231 IRAQVGSGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLLR---KDEGK 281

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D+      I    V             S P+       R        E      A  
Sbjct: 282 TVVDLFRHHYNIPLVHVDAAKLFLGELEGVSDPELKRKTIGRLFINVFEGEAKMIGGADF 341

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 342 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMQLVEPLRELFKDEVRVLG 398

Query: 182 LQRNIS 187
            +  + 
Sbjct: 399 RELGLP 404


>gi|15597822|ref|NP_251316.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAO1]
 gi|107102147|ref|ZP_01366065.1| hypothetical protein PaerPA_01003197 [Pseudomonas aeruginosa PACS2]
 gi|116050613|ref|YP_790568.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|14195276|sp|Q9I0L2|MNMA_PSEAE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122259736|sp|Q02NB8|MNMA_PSEAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|9948693|gb|AAG06014.1|AE004691_5 tRNA methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|115585834|gb|ABJ11849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 375

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
            ++V +SGG DS    LL+       +  F K             E        A++++ 
Sbjct: 12  RVIVGMSGGVDSSVSALLLLQQGYQVEGLFMK----------NWDEDDGTEYCTAREDLA 61

Query: 72  YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAK 115
               VC R+ I     +     W N          A           RE ++    ++A 
Sbjct: 62  DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A LI T H     D    T  ++      ++   L  +    +         P    
Sbjct: 122 MLGADLIATGHYVRRRDRDGRTELLKGLDPNKDQSYFLHAVGGEQIARS----LFPVGEL 177

Query: 173 RREDIRSFLLQRNIS 187
            + ++R+   +  ++
Sbjct: 178 EKPEVRAIAEKHGLA 192


>gi|313673847|ref|YP_004051958.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940603|gb|ADR19795.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 343

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 26/187 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++VA+SGG DS      L  +  D     IK           E  +  ++    V  +
Sbjct: 2   KRVVVAMSGGVDSSVTAYILKKMGYDVVGVTIKMF---------ENQEKYLKDAEAVAKK 52

Query: 80  LRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLIM 123
           L I   ++       +T                  A   R A++  +        A  I 
Sbjct: 53  LDIKWEMIDKTIEFQETVISYFINSYRKGLTPNPCAYCNRNAKFFFLYNEMLKYGADHIA 112

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           T H   D +E    +  +         S     I  DL   +  P     + ++R     
Sbjct: 113 TGHYA-DIVEVDGHKYIKKSTNTKKDQSYYLALIRDDLLDKLLFPLGMMDKSEVRKIASS 171

Query: 184 RNISWCE 190
             +   E
Sbjct: 172 IGLEVAE 178


>gi|289191719|ref|YP_003457660.1| exsB protein [Methanocaldococcus sp. FS406-22]
 gi|288938169|gb|ADC68924.1| exsB protein [Methanocaldococcus sp. FS406-22]
          Length = 232

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS    +    +         + +AI+ ++  R  AK E+     +C  L I H 
Sbjct: 7  LSGGLDSTVATLIAKDL-------GYEVTAITFNYGQRA-AKREINSAKKICEILGIEHI 58

Query: 86 VVS 88
          VV 
Sbjct: 59 VVD 61


>gi|300311521|ref|YP_003775613.1| GMP synthase [Herbaspirillum seropedicae SmR1]
 gi|124483428|emb|CAM32587.1| GMP synthase protein [Herbaspirillum seropedicae]
 gi|300074306|gb|ADJ63705.1| GMP synthase protein [Herbaspirillum seropedicae SmR1]
          Length = 530

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 24/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 215 EAVEM-IRQQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLR-- 265

Query: 66  AKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAK 115
             DE + V +     L +    V               P+       RE      +E AK
Sbjct: 266 -LDEGKMVMEMFAKNLGVKVIHVDATAQFMGHLAGVTDPEAKRKIIGREFVEVFQAESAK 324

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +     + D +E+     +       +        +   LNL +  P     ++
Sbjct: 325 LTSAKWLAQGTIYPDVIES---AGKGKKTAHTIKSHHNVGGLPETLNLKLLEPLRELFKD 381

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 382 EVRELGVALGLPP 394


>gi|77164138|ref|YP_342663.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrosococcus oceani ATCC 19707]
 gi|254435046|ref|ZP_05048553.1| GMP synthase, C-terminal domain protein [Nitrosococcus oceani
           AFC27]
 gi|91206812|sp|Q3JDG3|GUAA_NITOC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|76882452|gb|ABA57133.1| GMP synthase (glutamine-hydrolyzing) [Nitrosococcus oceani ATCC
           19707]
 gi|207088157|gb|EDZ65429.1| GMP synthase, C-terminal domain protein [Nitrosococcus oceani
           AFC27]
          Length = 524

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           +R+ V    +L+ +SGG DS      LH  + D      +   + VD+ L  +  A   +
Sbjct: 220 IRTKVGADTVLLGLSGGVDSSVAAALLHKAIGD------QLICVFVDNGLLRQGEADQVM 273

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
              +     L I    +S +            P+       R        E AK  NA  
Sbjct: 274 ---ATFARHLGIKVIHISAETRFLEALAGVIDPEAKRKIIGRVFIEVFEEEAAKLPNAQW 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +    + +        +  +LNL +  P     ++++R   
Sbjct: 331 LAQGTIYPDVIES---AGGKTGKAQVIKSHHNVGGLPEELNLKLLEPLRELFKDEVRQLG 387

Query: 182 LQRNISW 188
            +  + +
Sbjct: 388 TELGLPF 394


>gi|83942346|ref|ZP_00954807.1| GMP synthase (glutamine-hydrolyzing) [Sulfitobacter sp. EE-36]
 gi|83953565|ref|ZP_00962286.1| GMP synthase (glutamine-hydrolyzing) [Sulfitobacter sp. NAS-14.1]
 gi|83841510|gb|EAP80679.1| GMP synthase (glutamine-hydrolyzing) [Sulfitobacter sp. NAS-14.1]
 gi|83846439|gb|EAP84315.1| GMP synthase (glutamine-hydrolyzing) [Sulfitobacter sp. EE-36]
          Length = 520

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 21/188 (11%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE 69
             +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR+   +E
Sbjct: 214 AAIREQVGDQKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRKGEAEE 267

Query: 70  VRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREAR----YALISEHAKTIN-AT 120
           V  V+       +       +                R+        +  +HAK +  AT
Sbjct: 268 V--VTMFRDNYNMPLIHADEQELFLGELDGVSDPETKRKIIGKLFIDVFQKHAKEVGDAT 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   + L +  P     ++++R  
Sbjct: 326 FLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVREL 382

Query: 181 LLQRNISW 188
             +  +  
Sbjct: 383 GRELGLPP 390


>gi|115523063|ref|YP_779974.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           BisA53]
 gi|115517010|gb|ABJ04994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris BisA53]
          Length = 419

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 26/136 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L +   D     ++      DH     R+    A
Sbjct: 26  LEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLY----DHGEAIHRKGACCA 81

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 82  GQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSIKFRDL 141

Query: 111 SEHAKTINATLIMTAH 126
              A+ + A ++ T H
Sbjct: 142 LSTARELGAAVLATGH 157


>gi|330881196|gb|EGH15345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 303

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|322829891|gb|EFZ33128.1| GMP synthase, putative [Trypanosoma cruzi]
          Length = 686

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           ++R           +L +A SGG DS    + L   L     G  +   + +DH    LR
Sbjct: 239 ALRMIRERTAQGQKVLCLA-SGGVDSTVCAVLLLKAL-----GPERVVCVHIDHGFMRLR 292

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104
                E   V        ++  VV  +    +      AR 
Sbjct: 293 -----ETEEVVAALREAGVSVFVVDARAQFAEATTEMPARR 328


>gi|317490418|ref|ZP_07948901.1| GMP synthase domain-containing protein [Eggerthella sp. 1_3_56FAA]
 gi|316910462|gb|EFV32088.1| GMP synthase domain-containing protein [Eggerthella sp. 1_3_56FAA]
          Length = 327

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 45/218 (20%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           I+     +R+ +    +L+A+SGG DS  +   L   +        +   + V+H L R+
Sbjct: 23  IDEQMDAIRAQIGDKKVLLALSGGVDSSVVAALLIKAIGK------QLICVHVNHGLMRK 76

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKT 116
              ++V  V    ++L      V   +   +     A  EA+          +  E A+ 
Sbjct: 77  GESEQVVDVFQ--NQLDANLVYVDATDRFLELLDDVAEPEAKRKIIGAEFIRVFEEEARK 134

Query: 117 INATLIMT----------------AHTF-----DD-QLE-----TVYMRSQRDYAEKGMG 149
           +   +                   AH       DD Q E      +  + +     + +G
Sbjct: 135 VGDEVSFLAQGTIYPDILESDGVKAHHNVGGLPDDLQFELCEPVKLLYKDEVRVIGRELG 194

Query: 150 LS-GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           L  GM +   +       R      R+ + +      I
Sbjct: 195 LPEGMVERQPFPGPGLGVRCLGAITRDRLEALREADAI 232


>gi|320540371|ref|ZP_08040021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia symbiotica str. Tucson]
 gi|320029302|gb|EFW11331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Serratia symbiotica str. Tucson]
          Length = 366

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS----- 74
             ++V +SGG DS      L       +   +K               D+  Y S     
Sbjct: 7   KKVIVGISGGVDSSVTAYLLQQQGYQVAGLFMKNW----------EEDDDEEYCSAAADL 56

Query: 75  ----DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E +                  A +   
Sbjct: 57  ADAQAVCDKLGIKLHTVNFAAEYWDNVFELFLEEYQAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ ++A  I T H
Sbjct: 117 AEDLDADFIATGH 129


>gi|194016061|ref|ZP_03054676.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Bacillus pumilus ATCC 7061]
 gi|194012416|gb|EDW21983.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Bacillus pumilus ATCC 7061]
          Length = 513

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 203 NFIEIEMQKIRQTVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 257 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 314 SDKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 368 FKDEVRALGSELGIP 382


>gi|330828858|ref|YP_004391810.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Aeromonas veronii B565]
 gi|328803994|gb|AEB49193.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Aeromonas veronii B565]
          Length = 368

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A  ++   
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDTDEYCSAAQDLADA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC +L +    +++                +  R               A +   A+ 
Sbjct: 60  KAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEE 119

Query: 117 INATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + AT I T H    DD   T   R  R           +       +   +  P     +
Sbjct: 120 LGATYIATGHYVRRDDS--TGRPRLLRGLDTNKDQSYFLYTLSEKQVGQSLF-PVGDLEK 176

Query: 175 EDIRSFLLQRNI 186
            ++R    Q ++
Sbjct: 177 PEVRRIAEQLDL 188


>gi|313888971|ref|ZP_07822630.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844957|gb|EFR32359.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 506

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V    +L+A+SGG DS      L   + +      K + I VDH L R+   DEV 
Sbjct: 206 IKEKVGDGKVLLALSGGVDSSVTAALLSKAVGE------KLTCIFVDHGLMRKNEGDEVE 259

Query: 72  YV 73
             
Sbjct: 260 EA 261


>gi|308161314|gb|EFO63767.1| Hypothetical protein GLP15_3840 [Giardia lamblia P15]
          Length = 553

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 44/208 (21%)

Query: 20  AHILVAVSGGSDS------------MG---LLIALHSVLSDRSFGKIKFSAISVDHC--- 61
             + VA SGG DS            M    LL      +  R  G ++ + ++ D     
Sbjct: 290 RRVAVAFSGGKDSLCLLLHLALLSLMARRGLL----DPVGLRDLGMLEVTPVTFDPRIPG 345

Query: 62  -----LR---------ETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAR 103
                +R         +   +    +      + ++  +            +    +   
Sbjct: 346 FILDTIRGLCPCMLSIDGTAEGTVRLEQQVVGMDVSAKIARLDGASRQEAKKASACSVCS 405

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---- 159
             R   ++    T     +   H   D LET+ +      +  G+     C+   +    
Sbjct: 406 RCRRGTLASFVSTGGYDALALGHHLMDDLETLAITGIHGASFFGLRGYYHCEARDFASKV 465

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS 187
              + I RP L     +I   +    +S
Sbjct: 466 KHRVCILRPMLSVHVSEISRVVFHNGLS 493


>gi|292654369|ref|YP_003534266.1| hypothetical protein HVO_0190 [Haloferax volcanii DS2]
 gi|291372836|gb|ADE05063.1| conserved hypothetical protein TIGR00268 [Haloferax volcanii DS2]
          Length = 298

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 58/206 (28%), Gaps = 43/206 (20%)

Query: 1   MFLSPIESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M    + +    VR +L     +L+A SGG DS  +    H  L D         A +  
Sbjct: 1   MSERDVAAKADAVREALAERESVLIAFSGGVDSSVVAALAHEALGD------DAVACT-- 52

Query: 60  HCLRETA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYAL 109
                 +      E+     V   + I H  V +                   R  R   
Sbjct: 53  ----AKSETLPDAELDDAKRVAEEIGIEHLTVEFSELDNPDFVANDDDRCYHCRTMRLGR 108

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + E A+      +       D  E                  G    +     L +  P 
Sbjct: 109 MYEAARDRGIEAVCDGTNASDPGE------------------GHRPGLRAVEELEVLSPL 150

Query: 170 L--RCRREDIRSFLLQRNISWCEDPS 193
           L     +E++R+     ++S  + PS
Sbjct: 151 LAHGITKEEVRAIADDYDLSVADKPS 176


>gi|290475827|ref|YP_003468719.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus bovienii SS-2004]
 gi|289175152|emb|CBJ81955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus bovienii SS-2004]
          Length = 367

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 54/197 (27%), Gaps = 45/197 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS----- 74
             ++V +SGG DS      L       +   +K               D+  Y S     
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYKVAGLFMKNW----------EEDDDEEYCSAAADL 56

Query: 75  ----DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    +++              E +                  A +   
Sbjct: 57  ADAQAVCDKLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A+ + A  I T H     D D + +  +R      ++   L  +    +         P 
Sbjct: 117 AEDLGADYIATGHYVRRRDVDGI-SQLLRGLDGNKDQSYFLYTLSHQQIAKS----LFPV 171

Query: 170 LRCRREDIRSFLLQRNI 186
               + ++R    +  +
Sbjct: 172 GELEKPEVRRLAEEIGL 188


>gi|119476176|ref|ZP_01616528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2143]
 gi|119450803|gb|EAW32037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2143]
          Length = 372

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDE 69
                ++V +SGG DS    + L           +K           E        AKD+
Sbjct: 9   PSDQKVIVGMSGGVDSSVSALLLQQQGYQVEGLFMK--------NWDEDDGSEYCTAKDD 60

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
           +     VC +L+I     +     W N          A           RE ++    ++
Sbjct: 61  LADAQAVCDQLKITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDVLCNREIKFKAFLDY 120

Query: 114 AKTINATLIMTA-----HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A  + A  I T      H   D+ +   ++ + +  ++   L  +  T +         P
Sbjct: 121 ALVLGADYIATGHYVRKHQMGDRAQ--LIKGRDNNKDQSYFLHAVSGTEIAKT----LFP 174

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + D+R+   + +++
Sbjct: 175 VGDLEKPDVRAIAEKYSLT 193


>gi|71281561|ref|YP_269601.1| tRNA-specific 2-thiouridylase MnmA [Colwellia psychrerythraea 34H]
 gi|123632113|sp|Q480B8|MNMA_COLP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71147301|gb|AAZ27774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Colwellia psychrerythraea 34H]
          Length = 375

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A  ++   
Sbjct: 14  KVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMK--------NWEEDDTDEYCAASQDLEDA 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             +C +L I    +++             A  +  R               A +    + 
Sbjct: 66  QAICDKLDIKLHTINFATEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFACED 125

Query: 117 INATLIMTAHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A  I T H    Q E        +R   +  ++   L  + +  L         P   
Sbjct: 126 LGADYIATGHYV--QRELRDNSWKMIRGLDNNKDQSYFLYTLDEAQLAHT----LFPVGH 179

Query: 172 CRREDIRSFLLQRNI 186
             + ++R+   +  +
Sbjct: 180 IEKPEVRAIAEKAGL 194


>gi|327325596|gb|EGE67395.1| GMP synthase [Propionibacterium acnes HL103PA1]
          Length = 517

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|306844591|ref|ZP_07477178.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO1]
 gi|306275035|gb|EFM56798.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brucella sp. BO1]
          Length = 398

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 27/189 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEVRYVS 74
            ++VA+SGG DS  +   L     D     ++      DH     R  +     ++    
Sbjct: 16  RVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLY----DHGAAVHRAGSCCAGQDIEDAR 71

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTIN 118
            V   L I H V+ ++    +  +   A                   ++A + + A+ + 
Sbjct: 72  RVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFADLLQTARDLG 131

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  + T H    +    +    R           +  T    ++ ++  P     +  +R
Sbjct: 132 ADALATGHYIRSRANGAHRALYRPVDTDRDQSYFLFATTQEQID-YLRFPLGHLPKAQVR 190

Query: 179 SFLLQRNIS 187
               +  ++
Sbjct: 191 EIAEELGLT 199


>gi|225575528|ref|ZP_03784138.1| hypothetical protein RUMHYD_03620 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037254|gb|EEG47500.1| hypothetical protein RUMHYD_03620 [Blautia hydrogenotrophica DSM
           10507]
          Length = 512

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L A+SGG DS    + +   + D      + + + VDH  L
Sbjct: 200 SFVEESIKAIREKVGSGKVLCALSGGVDSSVAAVMMSKAVGD------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 254 RKNEGDEVEAV 264


>gi|161619531|ref|YP_001593418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella canis ATCC 23365]
 gi|260565920|ref|ZP_05836390.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40]
 gi|189036218|sp|A9M700|MNMA_BRUC2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161336342|gb|ABX62647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella canis ATCC 23365]
 gi|260155438|gb|EEW90518.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40]
          Length = 398

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 27/189 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEVRYVS 74
            ++VA+SGG DS  +   L     D     ++      DH     R  +     ++    
Sbjct: 16  RVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLY----DHGAAVHRAGSCCAGQDIEDAR 71

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTIN 118
            V   L I H V+ ++    +  +   A                   ++A + + A+ + 
Sbjct: 72  RVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFADLLQTARDLG 131

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  + T H    +    +    R           +  T    ++ ++  P     +  +R
Sbjct: 132 ADALATGHYIRSRANGAHRALYRPVDTDRDQSYFLFATTQEQID-YLRFPLGHLPKAQVR 190

Query: 179 SFLLQRNIS 187
               +  ++
Sbjct: 191 EIAEELGLT 199


>gi|157828286|ref|YP_001494528.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|166235079|sp|A8GRJ5|MNMA_RICRS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822057|sp|B0BWZ7|MNMA_RICRO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157800767|gb|ABV76020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia rickettsii str. 'Sheila Smith']
          Length = 365

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           + I+VA+SGG DS  +   L+    +     ++      DH +         A  ++   
Sbjct: 9   STIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIYDA 64

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAKTI 117
             V ++L I H V+ +++   ++ +                    +  ++  + + A+ +
Sbjct: 65  KMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTAREL 124

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L     T   +   ++  P    
Sbjct: 125 GADKLATGHYVRKINGDNGAE--LHTGLDPAKDQSYFLF----TTTKEQLEYLRFPLGGL 178

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            + + R    +  +   + P + D  F
Sbjct: 179 TKGETRKLASKFGLEVADKPDSQDICF 205


>gi|165932990|ref|YP_001649779.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str.
           Iowa]
 gi|165908077|gb|ABY72373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia rickettsii str. Iowa]
          Length = 370

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 70/207 (33%), Gaps = 37/207 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           + I+VA+SGG DS  +   L+    +     ++      DH +         A  ++   
Sbjct: 14  STIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIYDA 69

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAKTI 117
             V ++L I H V+ +++   ++ +                    +  ++  + + A+ +
Sbjct: 70  KMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTAREL 129

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  + T H       D+  E           ++   L     T   +   ++  P    
Sbjct: 130 GADKLATGHYVRKINGDNGAE--LHTGLDPAKDQSYFLF----TTTKEQLEYLRFPLGGL 183

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            + + R    +  +   + P + D  F
Sbjct: 184 TKGETRKLASKFGLEVADKPDSQDICF 210


>gi|218891213|ref|YP_002440079.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa LESB58]
 gi|226704774|sp|B7UV15|MNMA_PSEA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218771438|emb|CAW27205.1| tRNA methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 375

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
            ++V +SGG DS    LL+       +  F K             E        A++++ 
Sbjct: 12  RVIVGMSGGVDSSVSALLLLQQGYQVEGLFMK----------NWDEDDGTEYCTAREDLA 61

Query: 72  YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAK 115
               VC R+ I     +     W N          A           RE ++    ++A 
Sbjct: 62  DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A LI T H     D    T  ++      ++   L  +    +         P    
Sbjct: 122 MLGADLIATGHYVRRRDRDGRTELLKGLDPNKDQSYFLHAVGGEQIARS----LFPVGEL 177

Query: 173 RREDIRSFLLQRNIS 187
            + ++R+   +  ++
Sbjct: 178 EKPEVRAIAEKHGLA 192


>gi|195953020|ref|YP_002121310.1| GMP synthase, large subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195932632|gb|ACG57332.1| GMP synthase, large subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 507

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 106/318 (33%), Gaps = 54/318 (16%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR 63
            IE +R  V +      ++ A+SGG DS    +  H  + D      K + I VDH  LR
Sbjct: 203 KIEEIRVTVGN----KKVICAISGGVDSAVAAVLTHKAIGD------KLTCIFVDHGLLR 252

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN--SKPQTGLMAAAREARY-------ALISEHA 114
           +    E   V    ++L +    +   N   +    +     + R         +  E A
Sbjct: 253 KNESKE---VISNLTKLGLNIVALDRSNLFLEKLKNVEDP-EQKRKIIGNTFIEIFEEEA 308

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLR 171
           K  NA  ++          T+Y          G            +   +NL +  P   
Sbjct: 309 KKYNAEFLLQG--------TLYPDLVESAGIHGSAKIKSHHNVGGLPEKMNLKLLEPLRE 360

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKK 222
             ++++R+  L+ ++         D  + R         +R+   V++ DL+ L      
Sbjct: 361 LFKDEVRALGLELDLP-------KDMVY-RHPFPGPGLAIRIIGDVKEEDLNILREADAI 412

Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
           F +   K N          + + ++S + +  D       L    +     +      LP
Sbjct: 413 FIEELKKWNLYDKTWQASAVLLPIKS-VGVMGDNRTYGKVLALRAVDSQDGMTAEPSKLP 471

Query: 283 GYRSMERVMLFLKSGKRG 300
            Y  +E VM  +    +G
Sbjct: 472 -YEFLEHVMRRIIQEVKG 488


>gi|331267205|ref|YP_004326835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis Uo5]
 gi|326683877|emb|CBZ01495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus oralis Uo5]
          Length = 373

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  + T H      D   E   +   R      ++   LS +    L         
Sbjct: 117 MTLGADYVATGHYARVARD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 170 PLGHLEKPEVRKLAEEAGLA 189


>gi|322375113|ref|ZP_08049627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C300]
 gi|321280613|gb|EFX57652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. C300]
          Length = 415

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 47  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 98

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 99  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 158

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  + T H      D   E   +   R      ++   LS +    L         
Sbjct: 159 MTLGADYVATGHYARVARD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 211

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 212 PLGHLEKPEVRKLAEEAGLA 231


>gi|315612257|ref|ZP_07887171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
 gi|315315650|gb|EFU63688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
          Length = 415

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 47  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 98

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 99  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 158

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  + T H      D   E   +   R      ++   LS +    L         
Sbjct: 159 MTLGADYVATGHYARVARD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 211

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 212 PLGHLEKPEVRKLAEEAGLA 231


>gi|313808738|gb|EFS47192.1| GMP synthase protein [Propionibacterium acnes HL087PA2]
          Length = 517

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGGGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|306826063|ref|ZP_07459399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431779|gb|EFM34759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 415

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 47  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 98

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 99  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 158

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  + T H      D   E   +   R      ++   LS +    L         
Sbjct: 159 MTLGADYVATGHYARVARD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 211

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 212 PLGHLEKPEVRKLAEEAGLA 231


>gi|270291927|ref|ZP_06198142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M143]
 gi|270279455|gb|EFA25297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus sp. M143]
          Length = 383

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 15  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 67  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 126

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  + T H      D   E   +   R      ++   LS +    L         
Sbjct: 127 MTLGADYVATGHYARVARD---EDGIVHMLRGVDTGKDQTYFLSQLSQEQLQKTMF---- 179

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 180 PLGHLEKPEVRKLAEEAGLA 199


>gi|225026163|ref|ZP_03715355.1| hypothetical protein EUBHAL_00404 [Eubacterium hallii DSM 3353]
 gi|224956414|gb|EEG37623.1| hypothetical protein EUBHAL_00404 [Eubacterium hallii DSM 3353]
          Length = 515

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 210 IREKVGDGRVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKDEGDEVE 263

Query: 72  YV 73
            V
Sbjct: 264 SV 265


>gi|306828717|ref|ZP_07461909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis ATCC 6249]
 gi|304428895|gb|EFM31983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus mitis ATCC 6249]
          Length = 373

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  + T H      D   E   +   R      ++   LS +    L         
Sbjct: 117 MTLGADYVATGHYARVARD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 170 PLGHLEKPEVRRLAEEAGLA 189


>gi|298384831|ref|ZP_06994390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
 gi|298261975|gb|EFI04840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
          Length = 362

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++ +R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAAR 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  ++   I 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDCAYIA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R     G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEERNGHIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDY 161

Query: 173 RREDIRSFLLQRN 185
            +  +R +L ++ 
Sbjct: 162 TKIKVREYLAEKG 174


>gi|257462397|ref|ZP_05626811.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D12]
 gi|317060061|ref|ZP_07924546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
 gi|313685737|gb|EFS22572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
          Length = 350

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 46/199 (23%), Gaps = 46/199 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + +A+SGG DS  +   L           +                 + + V   C  L
Sbjct: 14  RVGIALSGGVDSSTVAYLLKK--RGYDIFGVTMRTCH-------EEDADAKKV---CQDL 61

Query: 81  RIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
            I H V               V                R  ++  + +      A  + T
Sbjct: 62  GIQHYVLDLTEDFSEKVMDYFVEEYMQGRTPNPCMVCNRHIKFGKLLDFILEQGAQYMAT 121

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H       T  +       + G          +  +    I  P     +  +R    +
Sbjct: 122 GHY------TKLVDGHLSVGDDGGKDQVYFLSQVPKEKLKNIIFPVGDLEKRQVRELAKE 175

Query: 184 RN-----------ISWCED 191
                        I + ED
Sbjct: 176 LGVRVHAKKDSQEICFVED 194


>gi|229131264|ref|ZP_04260168.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST196]
 gi|228652202|gb|EEL08135.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST196]
          Length = 515

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R   KDE   V         +    V  +            P+        E  Y    E
Sbjct: 259 R---KDEAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229009759|ref|ZP_04166981.1| GMP synthase, large subunit [Bacillus mycoides DSM 2048]
 gi|229165241|ref|ZP_04293031.1| GMP synthase, large subunit [Bacillus cereus AH621]
 gi|228618236|gb|EEK75271.1| GMP synthase, large subunit [Bacillus cereus AH621]
 gi|228751519|gb|EEM01323.1| GMP synthase, large subunit [Bacillus mycoides DSM 2048]
          Length = 515

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R   KDE   V         +    V  +            P+        E  Y    E
Sbjct: 259 R---KDEAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|163938259|ref|YP_001643143.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus weihenstephanensis KBAB4]
 gi|226738389|sp|A9VQG9|GUAA_BACWK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|163860456|gb|ABY41515.1| GMP synthase, large subunit [Bacillus weihenstephanensis KBAB4]
          Length = 512

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R   KDE   V         +    V  +            P+        E  Y    E
Sbjct: 256 R---KDEAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 367 FKDEVRVLGSELGIP 381


>gi|118443777|ref|YP_878930.1| GMP synthase [Clostridium novyi NT]
 gi|226738427|sp|A0Q2S8|GUAA_CLONN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118134233|gb|ABK61277.1| GMP synthase [Clostridium novyi NT]
          Length = 512

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 25/192 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++  ++ LV    +L A+SGG DS    + +H  +        + + + VDH  LR+ 
Sbjct: 206 EKIK-AIKELVGDKKVLCALSGGVDSSVAAVLVHKAIGK------QLTCVFVDHGLLRKD 258

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKT 116
             D+V  +     +  +    V+            S P+T       E       E  K 
Sbjct: 259 EGDQVEAIFK--KQFDMNLIRVNAGERFLGKLKGVSDPETKRKIIGEEFIRVFEEEAGKL 316

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E              +        +  D+   +  P     +++
Sbjct: 317 GQIDFLVQGTIYPDVVE------SGTNTSATIKSHHNVGGLPEDMQFSLIEPLRELFKDE 370

Query: 177 IRSFLLQRNISW 188
           +R+   +  I  
Sbjct: 371 VRAVGEELGIPH 382


>gi|319946006|ref|ZP_08020255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus australis ATCC 700641]
 gi|319747814|gb|EFW00059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus australis ATCC 700641]
          Length = 373

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  + T H      D   E   +   R      ++   LS +    L         
Sbjct: 117 MTLGADYVATGHYARVARD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 170 PLGHLEKPEVRRLAEEAGLA 189


>gi|156538919|ref|XP_001600789.1| PREDICTED: similar to CG8078-PA [Nasonia vitripennis]
 gi|156540338|ref|XP_001600006.1| PREDICTED: similar to CG8078-PA [Nasonia vitripennis]
 gi|156542662|ref|XP_001605189.1| PREDICTED: similar to CG8078-PA [Nasonia vitripennis]
          Length = 185

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               + +  SGG DS  L   L  +L++R    ++   +S++  +     D +  V    
Sbjct: 50  RGDKVAIGASGGKDSTVLAYILK-LLNERYDYGLELFLLSIEEGISGYRDDSLETVKQNR 108

Query: 78  SRLRIAHSVVSWKN 91
              ++   ++ +K+
Sbjct: 109 DDYQLPLKILFYKD 122


>gi|157375020|ref|YP_001473620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sediminis HAW-EB3]
 gi|189040509|sp|A8FUG9|MNMA_SHESH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157317394|gb|ABV36492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sediminis HAW-EB3]
          Length = 372

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 39/197 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDE 69
           +    ++V +SGG DS      L           +K           E        A D+
Sbjct: 9   INNKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMK--------NWEEDDTDEYCAAADD 60

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISE 112
           ++    VC +L I    V++ +           A  +  R               A +  
Sbjct: 61  LKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEF 120

Query: 113 HAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               ++A  I   H     D+  ++  +R +    ++   L  +    +         P 
Sbjct: 121 ADDILDADYIAMGHYVRRSDESGQSQMLRGRDGNKDQSYFLYTLSHEQISRS----LFPV 176

Query: 170 LRCRREDIRSFLLQRNI 186
               + ++R    +  +
Sbjct: 177 GELEKSEVREIAKEMGL 193


>gi|298480486|ref|ZP_06998683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
 gi|298273307|gb|EFI14871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
          Length = 379

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 30/185 (16%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS     A+  + +      + F    ++      + + +    ++  R
Sbjct: 6   KRVLLGMSGGTDSSV--AAMRLLEAGYEVIGVTFRFYELN-----GSTEYLEDARNLAER 58

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIM 123
           L I H     +    +  +        A R            ++ L+++ A  +    I 
Sbjct: 59  LGIRHITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGIFYIA 118

Query: 124 TAH-TFDDQL-ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T H   + QL ET Y+    D  +     L G+   IL  +      P     + + R++
Sbjct: 119 TGHYAQNIQLNETFYITYAADSDKDQTFFLWGLKQDILNRM----LLPMGDITKAEARAW 174

Query: 181 LLQRN 185
             +  
Sbjct: 175 AAEHG 179


>gi|253574914|ref|ZP_04852254.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845960|gb|EES73968.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 378

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 38/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +F   +        A+ +   V
Sbjct: 10  RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDDTDEFGYCT--------AEADAEDV 61

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL-----MAAA-----------REARYALISEHAKTI 117
             VC ++ I +  V+++                            RE ++      A  +
Sbjct: 62  RRVCEQIDIPYYTVNFEKQYYDKVFAYFLEEYKRGRTPNPDVMCNREIKFGEFLNKALDL 121

Query: 118 NATLIMTAHTFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H      E    +  R      ++   L+ +    L         P     +
Sbjct: 122 GADYVATGHYARVVEENKTYKLLRGVDSNKDQTYFLNALNQEQLSKAMF----PIGHLPK 177

Query: 175 EDIRSFLLQRNI 186
            ++R    +  +
Sbjct: 178 PEVRRIAEEAGL 189


>gi|205821605|sp|Q07SU0|MNMA_RHOP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 400

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 26/136 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---A 66
           +        ++VA+SGG DS      L +   D     ++      DH     R+    A
Sbjct: 7   LEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLY----DHGEAIHRKGACCA 62

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALI 110
             ++     V  R+ I H V+ +++   ++ + + A                R  ++  +
Sbjct: 63  GQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSIKFRDL 122

Query: 111 SEHAKTINATLIMTAH 126
              A+ + A ++ T H
Sbjct: 123 LSTARELGAAVLATGH 138


>gi|159039742|ref|YP_001538995.1| GMP synthase [Salinispora arenicola CNS-205]
 gi|157918577|gb|ABW00005.1| GMP synthase, large subunit [Salinispora arenicola CNS-205]
          Length = 517

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS      +H  + D      + + + VDH  LR    ++V 
Sbjct: 211 IREQVGTKEVICGLSGGVDSAVAAALVHRAVGD------QLTCVFVDHGLLRAGEAEQVE 264

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARY---ALISEHAKTINA 119
              D  +   I   VV   +         S P+       RE      A   + A   + 
Sbjct: 265 --KDYVAATGIRLKVVDSADRFLTALAGVSDPERKRKIIGREFIRTFEAAARDIAAHGDV 322

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 323 EFLVQGTLYPDVVES-----GGGAGTASIKSHHNVGGLPEDLGFSLVEPLRTLFKDEVRA 377

Query: 180 FLLQRNIS 187
             LQ  + 
Sbjct: 378 LGLQLGLP 385


>gi|167772092|ref|ZP_02444145.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM
           17241]
 gi|167665890|gb|EDS10020.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM
           17241]
          Length = 349

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 31/186 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA+SGG DS    + L     + +    +      + C        VR    VC  L 
Sbjct: 5   VLVAMSGGVDSSVAALLLKRQGYEVAGATFEL----FNGC--PEGN--VRDARAVCDCLG 56

Query: 82  IAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINATLIMTA 125
           I H V  ++    +  L                 A  R  ++    + A  +  T I T 
Sbjct: 57  IRHYVFDYRALFQKRVLEHFVDSYLTGKTPNPCVACNRSVKFGAFLQDAMRLGYTHISTG 116

Query: 126 HTFD---DQ-LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           H      DQ      ++  R   +     S +   +  +    +  P     ++++R+F 
Sbjct: 117 HYAGVAYDQTAGRYCLQRSRQTRKDQ---SYVLYHLSQEQLSRLLLPVDGYTKDEVRAFA 173

Query: 182 LQRNIS 187
            +  + 
Sbjct: 174 AEAGLP 179


>gi|119470125|ref|ZP_01612891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alteromonadales bacterium TW-7]
 gi|119446546|gb|EAW27820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alteromonadales bacterium TW-7]
          Length = 366

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 57/195 (29%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A ++++  
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNDEYCAAAEDLKDA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC +L I    V++                +  R               A +   A+ 
Sbjct: 60  QAVCDKLGIELHTVNFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAQA 119

Query: 117 INATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A  I T H       DD+   V  R   +  ++   L  +    +         P   
Sbjct: 120 LGADFIATGHYVRRELRDDKY--VMCRGLDNNKDQSYFLYTLSHEHIAQT----LFPVGD 173

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++++
Sbjct: 174 IAKPEVRRIAEEQDL 188


>gi|15643833|ref|NP_228881.1| hypothetical protein TM1075 [Thermotoga maritima MSB8]
 gi|4981620|gb|AAD36152.1|AE001768_1 hypothetical protein TM_1075 [Thermotoga maritima MSB8]
          Length = 303

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 50/182 (27%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDV 76
               + VA SGG DS      L ++L+  + G+ +   ++VD        +     V + 
Sbjct: 2   KDGKLYVAFSGGKDSS-----LVAILAKMALGEERVELVTVD--WSPYTYERSREIVRNF 54

Query: 77  CSRLRIAHSVVS-----WKNSKPQTGLMAAAREA------RYALISEHAKTINATLIMTA 125
             +  + H+ +       K  K      A  R+       RYA            L+ + 
Sbjct: 55  AEKHGLKHTFIPSNRMQEKVWKHGPSCNACTRDVKTVLVKRYA---------QGHLVASG 105

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
               D                     G     ++D    +  P  R  +E+I   L    
Sbjct: 106 ANASD-------------------SWGKTGLKVFDG---VYSPLCRVGKEEINEMLKFLG 143

Query: 186 IS 187
           + 
Sbjct: 144 LE 145


>gi|331017263|gb|EGH97319.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 366

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC R+ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           +  +R+   +  ++
Sbjct: 170 KPQVRAIAEKHGLA 183


>gi|314924249|gb|EFS88080.1| GMP synthase protein [Propionibacterium acnes HL001PA1]
 gi|314982160|gb|EFT26253.1| GMP synthase protein [Propionibacterium acnes HL110PA3]
 gi|315090391|gb|EFT62367.1| GMP synthase protein [Propionibacterium acnes HL110PA4]
 gi|315093777|gb|EFT65753.1| GMP synthase protein [Propionibacterium acnes HL060PA1]
 gi|315103896|gb|EFT75872.1| GMP synthase protein [Propionibacterium acnes HL050PA2]
          Length = 517

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|313763136|gb|EFS34500.1| GMP synthase protein [Propionibacterium acnes HL013PA1]
 gi|313816475|gb|EFS54189.1| GMP synthase protein [Propionibacterium acnes HL059PA1]
 gi|313828309|gb|EFS66023.1| GMP synthase protein [Propionibacterium acnes HL063PA2]
 gi|314914434|gb|EFS78265.1| GMP synthase protein [Propionibacterium acnes HL005PA4]
 gi|314917757|gb|EFS81588.1| GMP synthase protein [Propionibacterium acnes HL050PA1]
 gi|314919516|gb|EFS83347.1| GMP synthase protein [Propionibacterium acnes HL050PA3]
 gi|314930107|gb|EFS93938.1| GMP synthase protein [Propionibacterium acnes HL067PA1]
 gi|314957092|gb|EFT01197.1| GMP synthase protein [Propionibacterium acnes HL027PA1]
 gi|314957682|gb|EFT01785.1| GMP synthase protein [Propionibacterium acnes HL002PA1]
 gi|315097885|gb|EFT69861.1| GMP synthase protein [Propionibacterium acnes HL059PA2]
 gi|315100650|gb|EFT72626.1| GMP synthase protein [Propionibacterium acnes HL046PA1]
 gi|315109277|gb|EFT81253.1| GMP synthase protein [Propionibacterium acnes HL030PA2]
 gi|327451308|gb|EGE97962.1| GMP synthase protein [Propionibacterium acnes HL087PA3]
 gi|327451786|gb|EGE98440.1| GMP synthase protein [Propionibacterium acnes HL083PA2]
 gi|328752271|gb|EGF65887.1| GMP synthase protein [Propionibacterium acnes HL087PA1]
 gi|328755345|gb|EGF68961.1| GMP synthase protein [Propionibacterium acnes HL025PA2]
          Length = 517

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALSGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|81427749|ref|YP_394748.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus sakei subsp. sakei 23K]
 gi|91206809|sp|Q38ZE1|GUAA_LACSS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78609390|emb|CAI54436.1| Guanosine monophosphate synthase (Glutamine amidotransferase)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 517

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  + D      +  +I VDH  LR+    EV 
Sbjct: 216 IREQVGDKKVLLGLSGGVDSSVVGVLLHRAIGD------QLVSIFVDHGLLRKG---EVE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +  +  +    V  K          S P+        E       E  K      
Sbjct: 267 QVMESLGGKFGLNIIQVDAKERFMSKLAGVSDPEKKRKIIGNEFIQVFDEEATKLNGIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E              +        +  D+   +  P     ++++R   
Sbjct: 327 LAQGTLYTDIIE------SGTSTATTIKSHHNVGGLPEDMQFSLIEPLNTLFKDEVRDLG 380

Query: 182 LQRNISW 188
            +  + +
Sbjct: 381 EKLGMPY 387


>gi|46447434|ref|YP_008799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/
           antisuppressor [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|81626468|sp|Q6MA75|MNMA_PARUW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46401075|emb|CAF24524.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase/
           Antisuppressor [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 376

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 41/201 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++V +SGG DS    + +         +       K +            ++  +   V 
Sbjct: 7   VVVGMSGGVDSSVSALLMKEQGYNVIGLFMKNWEEKDENGVC--------SSAQDYDDVR 58

Query: 75  DVCSRLRIAHSVVSW-KNSKPQTGLMAAA---------------REARYALISEHAKTIN 118
            VC  + I +  V++ +N + Q      A               RE ++ +  E A  + 
Sbjct: 59  RVCDHINIPYYAVNFVENYRKQVFTQFIADFQKGWTPNPDILCNREIKFKVFLEKALELG 118

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRR 174
           A  + T H      + + +        KG+  +      LY LN  I +    P     +
Sbjct: 119 ADFLATGH----YCQNLILDKGSPSLVKGIDHNKDQTYFLYTLNQQILQQVLFPVGGLEK 174

Query: 175 EDIRSFLLQRNISWCE--DPS 193
             +R    +  +   E  D +
Sbjct: 175 SQVRDIARKHQLVTAEKKDST 195


>gi|28870522|ref|NP_793141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|37999578|sp|Q87ZR6|MNMA_PSESM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28853770|gb|AAO56836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 376

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 12  KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 63

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC R+ I     +     W N          A           RE ++    ++A  
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 123

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 124 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 179

Query: 174 REDIRSFLLQRNIS 187
           +  +R+   +  ++
Sbjct: 180 KPQVRAIAEKHGLA 193


>gi|88855841|ref|ZP_01130504.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine actinobacterium PHSC20C1]
 gi|88815165|gb|EAR25024.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine actinobacterium PHSC20C1]
          Length = 533

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      +   I VDH  LR+  + +V 
Sbjct: 222 IREQVGSARVICGLSGGVDSAVAAAIVHKAVGD------QLVCIFVDHGLLRQDERRQVE 275

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
              D  +   +    V   +           P+T      RE   +          A  +
Sbjct: 276 --EDYVASTGVRLVTVDAVDQFMDALAGVTDPETKRKIIGREFIRSF------ENAAEAL 327

Query: 123 MTAHTFDDQLETVYMRSQ---------RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +      D+     ++                  +        +  DL   +  P     
Sbjct: 328 VLETQGSDETVKFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLQFDLVEPLRTLF 387

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 388 KDEVRAIGRELGLP 401


>gi|258545827|ref|ZP_05706061.1| GMP synthase (glutamine-hydrolyzing) [Cardiobacterium hominis ATCC
           15826]
 gi|258518843|gb|EEV87702.1| GMP synthase (glutamine-hydrolyzing) [Cardiobacterium hominis ATCC
           15826]
          Length = 525

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 27/196 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R+ V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 208 IEEAVEKIRAQVGNDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 261

Query: 65  TAKDEVRYV-SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISE 112
               E + V       L +  +V+    S            P+        E       E
Sbjct: 262 N---EAKSVMQMFARNLGV--NVIHVDASADFMAKLAGVTDPEQKRKIIGAEFVEVFQRE 316

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +   LNL +  P    
Sbjct: 317 AGKRANARWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPETLNLKLLEPLRDL 373

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   +   +  
Sbjct: 374 FKDEVRELGVALGLPH 389


>gi|70946522|ref|XP_742967.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56522234|emb|CAH80335.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 142

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             I +AVSGG DS  L   L ++    ++       +++D  ++    D ++ V  +   
Sbjct: 49  DKICIAVSGGKDSSVLTHVLVNIKKKYNY-NWNLFLLAIDEGIKGYRDDSLKVVYKLEKL 107

Query: 80  LRIAHSVVSWKN 91
             +  SV+ +++
Sbjct: 108 YNLPLSVLKFQD 119


>gi|330813890|ref|YP_004358129.1| Glutamine-hydrolyzing GMP synthase [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486985|gb|AEA81390.1| Glutamine-hydrolyzing GMP synthase [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 281

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S +E + F ++  V    +L A+SGG DS  L   L   L++R         + +D  L 
Sbjct: 206 SKLEKIIFEIKKTVGKKKVLCALSGGVDSSVLAHILKKALNNR------VYCVYIDTGLM 259

Query: 63  RETAKDE 69
           R+    E
Sbjct: 260 RKNESKE 266


>gi|160901537|ref|YP_001567118.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Petrotoga mobilis SJ95]
 gi|226739655|sp|A9BER7|GUAA_PETMO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|160359181|gb|ABX30795.1| GMP synthase, large subunit [Petrotoga mobilis SJ95]
          Length = 507

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 24/197 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            +  +E+    ++  +     ++A+SGG DS    +  H  + +         AI V+H 
Sbjct: 193 LMDFVENKIKEIKDTIGDKKAIIALSGGVDSSVAAVLTHRAIGN------NLKAIFVNHG 246

Query: 62  -LRETAKDEVRYVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALI 110
            LR     EV  V         +  + V  +          + P+        E      
Sbjct: 247 FLRMN---EVEEVESTFRDYMGLNLTTVDAQERFLSKLKGVTDPEQKRKIIGEEFIRVFE 303

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E  K      ++    + D +E+    ++       +        +  D++L I  P  
Sbjct: 304 QEAKKEEGCEYLIQGTIYSDVIES----AKSGKKTFKIKSHHNVGGLPEDIDLKIVEPLK 359

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++RS      + 
Sbjct: 360 ELFKDEVRSVGEILGLP 376


>gi|301381398|ref|ZP_07229816.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058396|ref|ZP_07249937.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato
           K40]
 gi|302130355|ref|ZP_07256345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 366

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC R+ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           +  +R+   +  ++
Sbjct: 170 KPQVRAIAEKHGLA 183


>gi|242277963|ref|YP_002990092.1| ExsB family protein [Desulfovibrio salexigens DSM 2638]
 gi|242120857|gb|ACS78553.1| ExsB family protein [Desulfovibrio salexigens DSM 2638]
          Length = 269

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 58/180 (32%), Gaps = 39/180 (21%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR-YVSDVCSRLR 81
           ++A SGG DS  LL      L D++      S   V            +    +   ++ 
Sbjct: 22  VIAFSGGVDSTLLLHTAKEALGDKAIAA-SISTPYV--------PQWEQGEAKEFAEQME 72

Query: 82  IAHSVV------SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + H VV        + + P+       +   ++ + E A+  +   ++     DD     
Sbjct: 73  VKHVVVDMGFPEELRMNPPEH--CYTCKNILFSKLLEIAQENDIEHVLEGTNIDD----- 125

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWCEDPS 193
                         LS     I     L I  PF+     +++IR    + N+     PS
Sbjct: 126 --------------LSDYRPGIKALRELEIRSPFVEAELTKQEIRDISRRFNLPTWNKPS 171


>gi|312114447|ref|YP_004012043.1| GMP synthase, large subunit [Rhodomicrobium vannielii ATCC 17100]
 gi|311219576|gb|ADP70944.1| GMP synthase, large subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 525

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R-ETAKDEV 70
           +R  V    ++  +SGG DS    + +H  + D      + + I VDH L R   ++  V
Sbjct: 216 IREQVGNERVICGLSGGVDSSVAAVLIHEAIGD------QLTCIYVDHGLMRLGESEQVV 269

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINAT- 120
               D      I    V   +         + P+       R     +    AK I A  
Sbjct: 270 GMFRD---HYNIPLVHVDASDLFIDQLEGEADPEKKRKTIGRLF-IEVFEAEAKKIAADG 325

Query: 121 -----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +     + D +E+V   S        +        +   +++ +  P     ++
Sbjct: 326 RGAPRFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPERMHMKLVEPLRELFKD 382

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  + 
Sbjct: 383 EVRALGRELGLP 394


>gi|224824532|ref|ZP_03697639.1| GMP synthase, large subunit [Lutiella nitroferrum 2002]
 gi|224603025|gb|EEG09201.1| GMP synthase, large subunit [Lutiella nitroferrum 2002]
          Length = 525

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 64/196 (32%), Gaps = 27/196 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + +      + + + VDH  LR 
Sbjct: 207 IEEAIQKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGE------QLTCVFVDHGLLRL 260

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKT 116
               E + V +     L +   V+    ++        +T      +      +    + 
Sbjct: 261 N---EGKMVMEMFAQNLGVK--VIHVDATEQFMGKLAGETDPEKKRKIIGAEFVEVFQRE 315

Query: 117 IN----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                 A  +     + D +E+      +      +        +  D+NL +  P    
Sbjct: 316 SGKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPDDMNLKLLEPLRDL 372

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   +   +  
Sbjct: 373 FKDEVRQLGVALGLPH 388


>gi|213970042|ref|ZP_03398174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato T1]
 gi|213925146|gb|EEB58709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas syringae pv. tomato T1]
          Length = 376

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 12  KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 63

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC R+ I     +     W N          A           RE ++    ++A  
Sbjct: 64  AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 123

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 124 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 179

Query: 174 REDIRSFLLQRNIS 187
           +  +R+   +  ++
Sbjct: 180 KPQVRAIAEKHGLA 193


>gi|16125867|ref|NP_420431.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Caulobacter crescentus CB15]
 gi|221234629|ref|YP_002517065.1| GMP synthase [Caulobacter crescentus NA1000]
 gi|24211765|sp|Q9A7U9|GUAA_CAUCR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800091|sp|B8GVI7|GUAA_CAUCN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|13423021|gb|AAK23599.1| GMP synthase [Caulobacter crescentus CB15]
 gi|220963801|gb|ACL95157.1| GMP synthase (glutamine-hydrolyzing) [Caulobacter crescentus
           NA1000]
          Length = 520

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VD   LR+    E  
Sbjct: 216 IRDQVGDGKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDTGLLRKN---EAD 266

Query: 72  YVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      I    V   +         S P+T      R        E AK   AT 
Sbjct: 267 QVVTLFRDHYNIPLVHVDAGDLFLGELAGVSDPETKRKTIGRLFIDVFDKEAAKIEGATF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S R      +        +   + L +  P     ++++R+  
Sbjct: 327 LAQGTLYPDVVESV---SARGGPSAVIKSHHNVGGLPDYMKLKLVEPLRELFKDEVRALG 383

Query: 182 LQRNISW 188
           ++  ++ 
Sbjct: 384 VELGLAP 390


>gi|85712895|ref|ZP_01043936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Idiomarina baltica OS145]
 gi|85693275|gb|EAQ31232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Idiomarina baltica OS145]
          Length = 376

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 45/203 (22%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       ++V +SGG DS      L           +K               D+  Y 
Sbjct: 5   KKNPSETKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNW----------EEDDDDEYC 54

Query: 74  ---------SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY- 107
                      VC +L I    V++                 A R          E ++ 
Sbjct: 55  AAADDLADAEAVCEKLGIELHTVNFAAEYWDNVFEHFLDEYKAGRTPNPDIMCNKEIKFK 114

Query: 108 ALISEHAKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           A +   A+ + A  I T H     F+D  +   +R   +  ++   L     T+ ++   
Sbjct: 115 AFLEFAAEALGADYIATGHYVRRAFND-GKWQLLRGLDNNKDQSYFLY----TLSHEHVA 169

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
               P     + ++R    ++ +
Sbjct: 170 QTLFPVGELEKPEVRRIAEEQGL 192


>gi|309799040|ref|ZP_07693293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis SK1302]
 gi|308117275|gb|EFO54698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis SK1302]
          Length = 373

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+   V  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEAGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRRLAEEAGLA 189


>gi|300115023|ref|YP_003761598.1| GMP synthase large subunit [Nitrosococcus watsonii C-113]
 gi|299540960|gb|ADJ29277.1| GMP synthase, large subunit [Nitrosococcus watsonii C-113]
          Length = 524

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           +R+ V    +L+ +SGG DS      LH  + D      +   + VD+ L  +  A   +
Sbjct: 220 IRTEVGADTVLLGLSGGVDSSVAAALLHKAIGD------QLICVFVDNGLLRQGEADQVM 273

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
              +     L I    +S +            P+       R        E AK  NA  
Sbjct: 274 ---ATFARHLGIKVIRISAEARFLEALAGVIDPEAKRKIIGRVFIEVFEEEAAKLSNAQW 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +    + +        +  +LNL +  P     ++++R   
Sbjct: 331 LAQGTIYPDVIES---AGGKTGKAQVIKSHHNVGGLPEELNLKLLEPLRELFKDEVRQLG 387

Query: 182 LQRNISW 188
            +  + +
Sbjct: 388 TELGLPF 394


>gi|289612991|emb|CBI59975.1| unnamed protein product [Sordaria macrospora]
          Length = 400

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + +      + + + VD   LR     E  
Sbjct: 96  IREQVGDGKVICGLSGGVDSSVAALLIHEAIGE------QLTCVFVDGGILRAG---EAE 146

Query: 72  YVSDVCS-RLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V  +      I    V  ++            EA+   I         +E  K   A  
Sbjct: 147 QVVSLFRGHYNIPLVHVDAQDLFMDGLAGVTDPEAKRKFIGKTFIDVFEAEANKLGGAQF 206

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R+  
Sbjct: 207 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMALVEPLRELFKDEVRALG 263

Query: 182 LQRNIS 187
            +  + 
Sbjct: 264 RELGLP 269


>gi|116073367|ref|ZP_01470629.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9916]
 gi|116068672|gb|EAU74424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9916]
          Length = 520

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 54/198 (27%), Gaps = 33/198 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDE 69
           +R       + V +SGG DS      L     +     +             L + A   
Sbjct: 149 LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSGKGACCAEGLVDAAG-- 206

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM-------------AAAREARYALISEHA-- 114
                 +C +L + H VV ++    +  +                +R  R          
Sbjct: 207 ------ICEQLGVPHHVVDFREHFKEQIVQFLVDGYAEGVTPLPCSRCNREVKFGPMLAW 260

Query: 115 --KTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             +  +   I T H       DQ +    +  R   ++      + D +  +    +  P
Sbjct: 261 AERERSIDRIATGHYARVRHGDQSDNGRHQLLRGLDQRKDQSYFLYD-LPQEALGRLVFP 319

Query: 169 FLRCRREDIRSFLLQRNI 186
                + D R    +  +
Sbjct: 320 LGELTKPDTRLEAERFGL 337


>gi|323357244|ref|YP_004223640.1| GMP synthase, PP-ATPase domain/subunit [Microbacterium testaceum
           StLB037]
 gi|323273615|dbj|BAJ73760.1| GMP synthase, PP-ATPase domain/subunit [Microbacterium testaceum
           StLB037]
          Length = 526

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 21/188 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  + ++ A+SGG DS      +H  + D      +  A+ VDH  LR+  +++V 
Sbjct: 215 IRQQVGTSRVISALSGGVDSAVSTALVHEAVGD------QLIAVFVDHGLLRQGEREQVE 268

Query: 72  YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
              D  +   +    V  +    N+          R+          + + A L+  A  
Sbjct: 269 N--DYVASTGVKLITVDARETFLNALAGVSDPEQKRKIIGREFIRAFEKVQADLVAEAKA 326

Query: 128 FDDQLE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +Q+      T+Y          G            +  DL   +  P     ++++R+
Sbjct: 327 EGEQVRFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLQFELVEPLRTLFKDEVRA 386

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 387 IGRELGLP 394


>gi|229135219|ref|ZP_04264018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST196]
 gi|228648261|gb|EEL04297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST196]
          Length = 376

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKD 68
            L     +++ +SGG DS    + L     D      +++     + +        TA +
Sbjct: 8   KLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDANGVC-------TATE 60

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISE 112
           +   V +VC+++ I +  V+++     K  T  +   R  R             +    E
Sbjct: 61  DYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLE 120

Query: 113 HAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           HA  + A  + T H       D  E   +R   D  ++   L+ +    L         P
Sbjct: 121 HAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF----P 175

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++  IR    +  ++
Sbjct: 176 LGELKKPQIREMATEAGLA 194


>gi|229013614|ref|ZP_04170745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides DSM 2048]
 gi|229062091|ref|ZP_04199416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH603]
 gi|229169139|ref|ZP_04296854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH621]
 gi|228614367|gb|EEK71477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH621]
 gi|228717243|gb|EEL68918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH603]
 gi|228747673|gb|EEL97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus mycoides DSM 2048]
          Length = 376

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKD 68
            L     +++ +SGG DS    + L     D      +++     + +        TA +
Sbjct: 8   KLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDANGVC-------TATE 60

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISE 112
           +   V +VC+++ I +  V+++     K  T  +   R  R             +    E
Sbjct: 61  DYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLE 120

Query: 113 HAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           HA  + A  + T H       D  E   +R   D  ++   L+ +    L         P
Sbjct: 121 HAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF----P 175

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++  IR    +  ++
Sbjct: 176 LGELKKPQIREMATEAGLA 194


>gi|163942146|ref|YP_001647030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus weihenstephanensis KBAB4]
 gi|205812536|sp|A9VIM2|MNMA_BACWK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163864343|gb|ABY45402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus weihenstephanensis KBAB4]
          Length = 371

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 38/199 (19%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKD 68
            L     +++ +SGG DS    + L     D      +++     + +        TA +
Sbjct: 3   KLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDANGVC-------TATE 55

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISE 112
           +   V +VC+++ I +  V+++     K  T  +   R  R             +    E
Sbjct: 56  DYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLE 115

Query: 113 HAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           HA  + A  + T H       D  E   +R   D  ++   L+ +    L         P
Sbjct: 116 HAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF----P 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++  IR    +  ++
Sbjct: 171 LGELKKPQIREMATEAGLA 189


>gi|313773174|gb|EFS39140.1| GMP synthase protein [Propionibacterium acnes HL074PA1]
 gi|313810468|gb|EFS48182.1| GMP synthase protein [Propionibacterium acnes HL083PA1]
 gi|313812197|gb|EFS49911.1| GMP synthase protein [Propionibacterium acnes HL025PA1]
 gi|313817918|gb|EFS55632.1| GMP synthase protein [Propionibacterium acnes HL046PA2]
 gi|313819831|gb|EFS57545.1| GMP synthase protein [Propionibacterium acnes HL036PA1]
 gi|313823321|gb|EFS61035.1| GMP synthase protein [Propionibacterium acnes HL036PA2]
 gi|313824795|gb|EFS62509.1| GMP synthase protein [Propionibacterium acnes HL063PA1]
 gi|313830153|gb|EFS67867.1| GMP synthase protein [Propionibacterium acnes HL007PA1]
 gi|313833132|gb|EFS70846.1| GMP synthase protein [Propionibacterium acnes HL056PA1]
 gi|314925824|gb|EFS89655.1| GMP synthase protein [Propionibacterium acnes HL036PA3]
 gi|314960768|gb|EFT04869.1| GMP synthase protein [Propionibacterium acnes HL002PA2]
 gi|314972998|gb|EFT17094.1| GMP synthase protein [Propionibacterium acnes HL053PA1]
 gi|314975612|gb|EFT19707.1| GMP synthase protein [Propionibacterium acnes HL045PA1]
 gi|314979811|gb|EFT23905.1| GMP synthase protein [Propionibacterium acnes HL072PA2]
 gi|314984804|gb|EFT28896.1| GMP synthase protein [Propionibacterium acnes HL005PA1]
 gi|314986155|gb|EFT30247.1| GMP synthase protein [Propionibacterium acnes HL005PA2]
 gi|314988768|gb|EFT32859.1| GMP synthase protein [Propionibacterium acnes HL005PA3]
 gi|315079971|gb|EFT51947.1| GMP synthase protein [Propionibacterium acnes HL078PA1]
 gi|315083298|gb|EFT55274.1| GMP synthase protein [Propionibacterium acnes HL027PA2]
 gi|315086929|gb|EFT58905.1| GMP synthase protein [Propionibacterium acnes HL002PA3]
 gi|315090020|gb|EFT61996.1| GMP synthase protein [Propionibacterium acnes HL072PA1]
 gi|315096658|gb|EFT68634.1| GMP synthase protein [Propionibacterium acnes HL038PA1]
 gi|327325073|gb|EGE66879.1| GMP synthase [Propionibacterium acnes HL096PA3]
 gi|327325300|gb|EGE67105.1| GMP synthase [Propionibacterium acnes HL096PA2]
 gi|327444103|gb|EGE90757.1| GMP synthase protein [Propionibacterium acnes HL043PA1]
 gi|327447533|gb|EGE94187.1| GMP synthase protein [Propionibacterium acnes HL043PA2]
 gi|327449272|gb|EGE95926.1| GMP synthase protein [Propionibacterium acnes HL013PA2]
 gi|328761283|gb|EGF74810.1| GMP synthase [Propionibacterium acnes HL099PA1]
 gi|332676163|gb|AEE72979.1| GMP synthase (glutamine-hydrolyzing) [Propionibacterium acnes 266]
          Length = 517

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|313896319|ref|ZP_07829872.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975118|gb|EFR40580.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 519

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 68/195 (34%), Gaps = 23/195 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++     +R  +     L A+SGG DS    + L   +          + + VDH  L
Sbjct: 206 SFVQKTIEELRKKIGGGRALCALSGGVDSSVAAVLLSKAIGK------NLTCVFVDHGLL 259

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           R+   DEV  V        +    ++ +          ++P+        E    +  E 
Sbjct: 260 RKNEGDEVEAVFGSAGTYDVNFIRINAQERFYEKLKGVTEPEQKRKIIGAEF-IRVFEEA 318

Query: 114 AKTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           A  I A   ++    + D +E+     +    +    + G+ D + +     I  P    
Sbjct: 319 AHEIGAVDFLVQGTIYPDVIESGL--GKSAVIKSHHNVGGLPDHVDFK---EIVEPLRLL 373

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 374 FKDEVRAAGRELGIP 388


>gi|220925891|ref|YP_002501193.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium nodulans ORS
           2060]
 gi|254811453|sp|B8IU32|MNMA_METNO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|219950498|gb|ACL60890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium nodulans ORS 2060]
          Length = 382

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 64/213 (30%), Gaps = 42/213 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R     A  ++
Sbjct: 10  PQDTRVVVAMSGGVDSSVVAGLLKRQGYDVVGITLQLY----DHGAATHRRGACCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
                    L I H V+ +++   +  +   A                R  ++  +   A
Sbjct: 66  HDARRAAETLGIPHYVLDYEDRFREAVIDRFADSYIHGETPIPCVECNRSIKFRDLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGM--GLSGMCDTILY-----DLNLWISR 167
             + A  + T H              R    + +   L    D   +        L + R
Sbjct: 126 LDLGADALATGH--------YVASRPRPGGSRALYRALDPARDQSYFLYATTAEQLDVLR 177

Query: 168 -PFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            P     +++ R    +  +S  + P + D  F
Sbjct: 178 FPLGELPKDETRRLAREFGLSVADKPDSQDICF 210


>gi|160883140|ref|ZP_02064143.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483]
 gi|299148187|ref|ZP_07041249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
 gi|156111365|gb|EDO13110.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483]
 gi|298512948|gb|EFI36835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
          Length = 361

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAER 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  +N   + 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R   + G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEEKSGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDY 161

Query: 173 RREDIRSFLLQRN 185
            +  +R +L ++ 
Sbjct: 162 TKVKVREYLAEKG 174


>gi|55379466|ref|YP_137316.1| tRNA methyl transferase [Haloarcula marismortui ATCC 43049]
 gi|55232191|gb|AAV47610.1| tRNA methyl transferase [Haloarcula marismortui ATCC 43049]
          Length = 290

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 42/199 (21%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +      L     +L+A SGG DS  +    +  L D         A +        +
Sbjct: 6   EKLAAAREDLKSRDGVLIAFSGGVDSSVVAALAYDALGD------DAIACT------AKS 53

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAKT 116
                 E+   + V   + I H +V +     +  +          R  R   + + A+ 
Sbjct: 54  ETLPAAELTDATRVAEEIGIRHEIVEFSELDSEEFMQNDDMRCYHCRSMRLGAMYDRARE 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRR 174
           +   ++       D  E                  G    +     L    P L     +
Sbjct: 114 LGIDIVCDGTNASDTGE------------------GHRPGLRAVEELDAYSPLLEHDIEK 155

Query: 175 EDIRSFLLQRNISWCEDPS 193
            ++R    + ++S  + PS
Sbjct: 156 SEVREIAREYDLSVADKPS 174


>gi|284163626|ref|YP_003401905.1| argininosuccinate synthase [Haloterrigena turkmenica DSM 5511]
 gi|284013281|gb|ADB59232.1| argininosuccinate synthase [Haloterrigena turkmenica DSM 5511]
          Length = 429

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 64/201 (31%), Gaps = 54/201 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + +A SGG D+   +  L     +  +G      ++VD   +  ++ E     +    L
Sbjct: 3   RVALAFSGGLDTTVCVPLL-----EEEYGYDDVIGVTVDVG-QPASEFEEA--EETADAL 54

Query: 81  RIAHSVVSWKNSKPQTGLM---------------AAAREARYALISEHAKTINATLIMTA 125
            + H VV  K       L                A AR      I E A+  + T I  A
Sbjct: 55  GLEHYVVDAKEEFADLCLEGVRANATYQGYPLGTALARPVIAEAILEVAEEQDCTGI--A 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDIRSFLL 182
           H                    G G   +  + I  D +L +  P   L   RE  + +  
Sbjct: 113 H-----------------GCTGKGNDQLRFEAIWRDSDLEVIAPVRELGLTREWEQEYAA 155

Query: 183 QRNIS--------WCEDPSNT 195
           ++++         W  D +N 
Sbjct: 156 EKDLPVEGGSGGDWSID-TNL 175


>gi|328756383|gb|EGF69999.1| GMP synthase protein [Propionibacterium acnes HL020PA1]
          Length = 517

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|257437854|ref|ZP_05613609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199514|gb|EEU97798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
          Length = 371

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 62/191 (32%), Gaps = 36/191 (18%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-----------AKDEVR 71
           L+A+SGG DS      +     D +   ++ +        R             ++ ++ 
Sbjct: 17  LIAMSGGVDSSVAAWLMQQAGYDCTGITMRLT--------RNETLGQSGFHTCCSEKDIE 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RY---ALISEHAK 115
             ++V   + I + V+ +     +  +    R               RY     +   A+
Sbjct: 69  DAAEVAFAMDIPYEVLDFTADFREKIIEKFIRVYEMGGTPNPCIDCNRYMKFDHLLRWAE 128

Query: 116 TINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +     ++T H    +Q E       +   ++G   S +   +  +    +  P     +
Sbjct: 129 SHGMEYVVTGHYARVEQDEATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHVRLPLGGLHK 188

Query: 175 EDIRSFLLQRN 185
            ++R    +++
Sbjct: 189 AEVREIAEKQH 199


>gi|163843840|ref|YP_001628244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella suis ATCC 23445]
 gi|189036219|sp|B0CI68|MNMA_BRUSI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163674563|gb|ABY38674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brucella suis ATCC 23445]
          Length = 398

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 60/194 (30%), Gaps = 29/194 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISVDHCLRETA---KDE 69
                ++VA+SGG DS  +   L     D     ++      A+      R  +     +
Sbjct: 12  PEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHSAAVH-----RAGSCCAGQD 66

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEH 113
           +     V   L I H V+ ++    +  +   A                   ++A + + 
Sbjct: 67  IEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFADLLQT 126

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+ + A  + T H    +    +    R           +  T    ++ ++  P     
Sbjct: 127 ARDLGADALATGHYIRSRANGAHRALYRPVDTDRDQSYFLFATTQEQID-YLRFPLGHLP 185

Query: 174 REDIRSFLLQRNIS 187
           +  +R    +  ++
Sbjct: 186 KAQVREIAEELGLT 199


>gi|307947086|ref|ZP_07662421.1| GMP synthase [Roseibium sp. TrichSKD4]
 gi|307770750|gb|EFO29976.1| GMP synthase [Roseibium sp. TrichSKD4]
          Length = 516

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L  +  A++ V
Sbjct: 212 IREQVGDKKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRQGEAEEVV 265

Query: 71  RYVSDV-------CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI-NATLI 122
               D             +    +    S P+       R     +  +HA  I  A  +
Sbjct: 266 TMFRDHYNMQLIHADEQDLFLGALEG-VSDPEEKRKTIGRLF-IDVFQKHANEIDGAEFL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R   +
Sbjct: 324 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRRLGV 380

Query: 183 QRNIS 187
           +  + 
Sbjct: 381 ELGLP 385


>gi|304409068|ref|ZP_07390689.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS183]
 gi|307303071|ref|ZP_07582826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica BA175]
 gi|304352889|gb|EFM17286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS183]
 gi|306913431|gb|EFN43853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica BA175]
          Length = 372

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 44/203 (21%)

Query: 16  LVYPAH----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------ 65
           L+ P H    ++V +SGG DS      L           +K           E       
Sbjct: 3   LIEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYC 54

Query: 66  -AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------Y 107
            A ++++    VC +L I    V++             A  +  R               
Sbjct: 55  AAAEDLKDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFK 114

Query: 108 ALISEHAKTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           A +    + ++A  I   H     D  +  T  +R      ++   L  +    +     
Sbjct: 115 AFLEFADEILDADYIAMGHYVRRRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS-- 172

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
               P     + ++R    +  +
Sbjct: 173 --LFPVGELEKHEVREIAKEMGL 193


>gi|284052528|ref|ZP_06382738.1| tRNA-specific 2-thiouridylase MnmA [Arthrospira platensis str.
           Paraca]
 gi|291571991|dbj|BAI94263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Arthrospira platensis NIES-39]
          Length = 359

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 59/201 (29%), Gaps = 55/201 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIK----FSAISVDHCLRETAK 67
            I+V +SGG DS      LH          +   R  G+        A  +         
Sbjct: 3   KIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLMRGKGQCCSEGMVDAAHI--------- 53

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGL----MAAA-REARYA-LI 110
                    C +L I H +V  ++                G+     +   R  ++  ++
Sbjct: 54  ---------CEQLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPML 104

Query: 111 SEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
              +  +N   I T H      + Q +    + +R           + D +  D+   + 
Sbjct: 105 GYASTELNINRIATGHYARVSYNSQCD--RHQLKRAVDRTKDQSYFLYD-LTQDILGAVV 161

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + + R    Q N+ 
Sbjct: 162 FPLGEVPKSETRRIAAQYNLK 182


>gi|297205825|ref|ZP_06923220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii JV-V16]
 gi|297148951|gb|EFH29249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus jensenii JV-V16]
          Length = 375

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     + +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDDTDDAGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++    Q             R          E ++    E A +++
Sbjct: 61  RVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D    T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYIAMGHYAKTVKDKNGVTHMMRPKDGNKDQTYFLSQLSQEQIK----HVIFPLANLTK 176

Query: 175 EDIRSFLLQRNIS 187
             +R    +  ++
Sbjct: 177 PQVREIAERSGLA 189


>gi|114569244|ref|YP_755924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maricaulis maris MCS10]
 gi|122316614|sp|Q0ARV1|MNMA_MARMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114339706|gb|ABI64986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maricaulis maris MCS10]
          Length = 405

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 58/220 (26%), Gaps = 51/220 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS      LH +  D     ++      DH             A  
Sbjct: 33  PGDHRVVVAMSGGVDSSVTAALLHHLGYDVVGVTLQLY----DHG--AAMAKKGACCAGQ 86

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISE 112
           ++     V       H V+ +++   +  +   A                       +  
Sbjct: 87  DIYDAKRVAEACGFRHYVLDYESRFREAVIEEFADTYLAGFTPIPCVRCNQTVKFADLLT 146

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            A+ + A  + T H             QR     G  L    D             +D  
Sbjct: 147 TARQLGAVCMATGH-----------YIQRVDGPNGAELRRAADAGKDQSYFLFATTHDQL 195

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P     ++  R       +   + P + D  F   
Sbjct: 196 DFLRFPLGHLNKDQTRELAEAFGLIVADKPDSQDICFVPN 235


>gi|302388936|ref|YP_003824757.1| GMP synthase (glutamine-hydrolyzing) [Thermosediminibacter oceani
           DSM 16646]
 gi|302199564|gb|ADL07134.1| GMP synthase (glutamine-hydrolyzing) [Thermosediminibacter oceani
           DSM 16646]
          Length = 511

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E +R  +R  V     L A+SGG DS    +  H  L D        + I VDH  LR  
Sbjct: 205 EQIRL-IRERVGNGRALCALSGGVDSSVAAVITHRALGD------NLTCIFVDHGLLR-- 255

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYAL---ISEHAKT 116
            KDE R V      +  I    V       K  +  T   A  R           + AK 
Sbjct: 256 -KDEARKVIETFKDKFHINLIAVDASDRFLKRLEGVTDPEAKRRIIGEEFIRVFEDEAKK 314

Query: 117 IN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFLRC 172
           +     ++    + D +E            +   +         +  DLN  +  P    
Sbjct: 315 LGKIDFLVQGTLYPDVIE---------SGTQTAAVIKTHHNVGGLPQDLNFELIEPLRDL 365

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   LQ  + 
Sbjct: 366 FKDEVRKVGLQLGLP 380


>gi|329906758|ref|ZP_08274508.1| GMP synthase (glutamine-hydrolyzing) [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547160|gb|EGF32023.1| GMP synthase (glutamine-hydrolyzing) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 534

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 32/190 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR    D   
Sbjct: 216 IRQQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLNEGD--- 266

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
            V D   + L +   V+    +    G +A             RE       E AK  NA
Sbjct: 267 MVMDMFATNLGVK--VIRVDATDQFMGHLAGVTDPEAKRKIIGREFVEVFQVESAKLKNA 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRCRREDI 177
             +     + D +E+          +KG  +        +   LNL +  P     ++++
Sbjct: 325 KWLAQGTIYPDVIESA------GKGKKGHTIKSHHNVGGLPETLNLKLLEPLRELFKDEV 378

Query: 178 RSFLLQRNIS 187
           R+  +   + 
Sbjct: 379 RALGVALGLP 388


>gi|317124173|ref|YP_004098285.1| GMP synthase (glutamine-hydrolyzing) [Intrasporangium calvum DSM
           43043]
 gi|315588261|gb|ADU47558.1| GMP synthase (glutamine-hydrolyzing) [Intrasporangium calvum DSM
           43043]
          Length = 527

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 37/205 (18%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + ++ +   +R  V    +L A+SGG DS      +   + D      + + + VDH  L
Sbjct: 207 NVVDELVESIRDQVGEDRVLCALSGGVDSSVAAALVQRAVGD------QLTCVFVDHGLL 260

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTG-----------LMAAA 102
           RE   ++V    D      +   VV  +          ++P+                AA
Sbjct: 261 REGEAEQVE--KDFVEATGVDLVVVDAQERFLTALAGVTEPEAKRKIIGEQFIRVFEQAA 318

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           R+    + S   +      ++    + D +E+             +        +  DL 
Sbjct: 319 RDV---VGSHADEEHPVKWLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQ 370

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P     ++++R   L+  + 
Sbjct: 371 FKLIEPLRTLFKDEVRQVGLELGVP 395


>gi|257419554|ref|ZP_05596548.1| hypothetical protein EFMG_00667 [Enterococcus faecalis T11]
 gi|257161382|gb|EEU91342.1| hypothetical protein EFMG_00667 [Enterococcus faecalis T11]
          Length = 278

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 85/279 (30%), Gaps = 72/279 (25%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            VR L     + VA SGG DS  LL  AL ++ ++         A+ V+  L   + DE 
Sbjct: 11  LVRELQKMDKLAVAYSGGIDSSYLLKKALDTLGAE------NVLAVVVNSEL--FSDDEF 62

Query: 71  RYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               D+ + L            +      + P +   +   +  Y  I    +     ++
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIVANNPNSWFYSK--KLLYKTIRSAIQKEGFDVL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSF 180
                 DD   T +    R   ++G                 +  P   ++  + +IR  
Sbjct: 121 ADGMIMDDN--TDFRPGLRARDQEG-----------------VISPLQQVKLYKIEIRQL 161

Query: 181 LLQRNISWC----------------------EDPSNTDDRFER------VRVR--RFVRD 210
                IS                         D     +++ R      VRVR    +  
Sbjct: 162 AKDAGISNWSKVASCSIASRIPYGIKLTRSAIDQVFASEKYLREIGFPIVRVRAHHDLAR 221

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           I++     K+    + R K+ + +      Y+T  +   
Sbjct: 222 IEIPE--DKLSLLLENRGKIADYLKKQGFNYVTFDLEGF 258


>gi|303234345|ref|ZP_07320984.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Finegoldia magna BVS033A4]
 gi|302494461|gb|EFL54228.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Finegoldia magna BVS033A4]
          Length = 510

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +          + + VDH L R+   DEV 
Sbjct: 209 IRKTVGDKKVLLALSGGVDSSVCAALLSRAIGK------NLTCVFVDHGLMRKNEGDEVE 262

Query: 72  YV 73
             
Sbjct: 263 AA 264


>gi|302379961|ref|ZP_07268440.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312187|gb|EFK94189.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Finegoldia magna ACS-171-V-Col3]
          Length = 510

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +          + + VDH L R+   DEV 
Sbjct: 209 IRKTVGDKKVLLALSGGVDSSVCAALLSRAIGK------NLTCVFVDHGLMRKNEGDEVE 262

Query: 72  YV 73
             
Sbjct: 263 AA 264


>gi|169824011|ref|YP_001691622.1| GMP synthase [Finegoldia magna ATCC 29328]
 gi|254800099|sp|B0S0S7|GUAA_FINM2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|167830816|dbj|BAG07732.1| GMP synthase [Finegoldia magna ATCC 29328]
          Length = 510

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +          + + VDH L R+   DEV 
Sbjct: 209 IRKTVGDKKVLLALSGGVDSSVCAALLSRAIGK------NLTCVFVDHGLMRKNEGDEVE 262

Query: 72  YV 73
             
Sbjct: 263 AA 264


>gi|319891351|ref|YP_004148226.1| GMP synthase, glutamine-hydrolyzing [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161047|gb|ADV04590.1| GMP synthase, glutamine-hydrolyzing [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465495|gb|ADX77648.1| GMP synthase [Staphylococcus pseudintermedius ED99]
          Length = 513

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IREKVGDRRVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFAEGFNMNIIRVNAKDRFMSKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|261415273|ref|YP_003248956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371729|gb|ACX74474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327007|gb|ADL26208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 355

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 42/196 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR----ETAKDEVR-- 71
               + V +SGG DS    + L            +   ++    LR      +  +V   
Sbjct: 2   SKTRVAVGMSGGVDSSVAALLLQQ-------QGYEVVGVT----LRVLPDVDSAFDVEND 50

Query: 72  ----YVSDVCSRLRIAHSVVSWKN-------SKPQTGLMAAA---------REARYALIS 111
                   +  +L I H V +  +        +       A          R  ++  + 
Sbjct: 51  PSVVRAKMIAEKLGIEHHVANCSDAFTGEVLKRCHADFSHARTPNPCCYCNRFIKFGWMM 110

Query: 112 EHAKTINATLIMTAHTFDDQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           ++AK++ A  + T H    ++E V    R  R     G   S     +  +    +  P 
Sbjct: 111 DYAKSLGAEFLATGHYV--RIEEVNGVRRLLRGRDP-GKDQSYFLFWVPDERRNHVLTPL 167

Query: 170 LRCRREDIRSFLLQRN 185
               + ++R    Q  
Sbjct: 168 GTYVKSEVREIAAQNG 183


>gi|257387062|ref|YP_003176835.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halomicrobium mukohataei DSM 12286]
 gi|257169369|gb|ACV47128.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halomicrobium mukohataei DSM 12286]
          Length = 289

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 43/204 (21%)

Query: 3   LSPIESVRFFVRS-LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           ++ +E+     R+ L     +L+A SGG DS  +    H  L D         A +    
Sbjct: 1   MTAVETKLDAARADLADREGVLIAFSGGVDSSVVAALAHDALGD------DAVACT---- 50

Query: 62  LRETAKD--EVRYV--SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALIS 111
               ++   E   V  + V   + I H +V +     +             R  R + + 
Sbjct: 51  --AKSETLPEAELVDANRVADEIGIRHEIVEFSELDSEAFVANDDERCYHCRSMRLSAMY 108

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL- 170
           + A+ +   ++       D  E                  G    +     L    P L 
Sbjct: 109 DEARRLGIDVVCDGTNASDPGE------------------GHRPGLRAVEELNAYSPLLE 150

Query: 171 -RCRREDIRSFLLQRNISWCEDPS 193
               +E++R    + ++S  + PS
Sbjct: 151 HDITKEEVREIAREYDLSVADKPS 174


>gi|33593602|ref|NP_881246.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bordetella pertussis Tohama I]
 gi|44887942|sp|Q7VVM4|GUAA_BORPE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33572958|emb|CAE42900.1| GMP synthase [glutamine-hydrolyzing] [Bordetella pertussis Tohama
           I]
 gi|332383007|gb|AEE67854.1| GMP synthase [Bordetella pertussis CS]
          Length = 530

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 24/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 214 EAVAR-IREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLR-- 264

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
             DE + V       + +    V             + P+       RE       E  K
Sbjct: 265 -LDEGKQVMQTFTENMGVKIVHVDATSQFMGKLTGVADPEAKRKIIGREFVEVFQDEAGK 323

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+      +      +        +   LNL +  P     ++
Sbjct: 324 LQGAKWLAQGTIYPDVIES---AGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFKD 380

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 381 EVRELGVALGLPP 393


>gi|14591154|ref|NP_143230.1| GMP synthase subunit B [Pyrococcus horikoshii OT3]
 gi|13626774|sp|O59072|GUAAB_PYRHO RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|119389212|pdb|2DPL|A Chain A, Crystal Structure Of The Gmp Synthase From Pyrococcus
           Horikoshii Ot3
 gi|119389213|pdb|2DPL|B Chain B, Crystal Structure Of The Gmp Synthase From Pyrococcus
           Horikoshii Ot3
 gi|188036150|pdb|2Z0C|A Chain A, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
           Horikoshii Ot3
 gi|188036151|pdb|2Z0C|B Chain B, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
           Horikoshii Ot3
 gi|254574796|pdb|3A4I|A Chain A, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
           Horikoshii Ot3
 gi|254574797|pdb|3A4I|B Chain B, Crystal Structure Of Gmp Synthetase Ph1347 From Pyrococcus
           Horikoshii Ot3
 gi|3257770|dbj|BAA30453.1| 308aa long hypothetical GMP synthase [Pyrococcus horikoshii OT3]
          Length = 308

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 30/191 (15%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E VR  +R  V  +  ++A+SGG DS    +  H  + DR        A+ V+   LR+ 
Sbjct: 9   EKVRE-IRETVGDSKAIIALSGGVDSSTAAVLAHKAIGDR------LHAVFVNTGFLRKG 61

Query: 66  AKDEVRYVSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYAL---ISEHAKT 116
              E  +V              +      +   K  T      +           E AK 
Sbjct: 62  ---EPEFVVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKK 118

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I A  ++      D +E       +   +    + G+ + +    NL +  P     +++
Sbjct: 119 IGAEYLIQGTIAPDWIE------SQGKIKSHHNVGGLPEKL----NLKLIEPLRDLYKDE 168

Query: 177 IRSFLLQRNIS 187
           +R       + 
Sbjct: 169 VRELAKFLGLP 179


>gi|260886986|ref|ZP_05898249.1| PP-loop family protein [Selenomonas sputigena ATCC 35185]
 gi|330839229|ref|YP_004413809.1| Conserved hypothetical protein CHP00268 [Selenomonas sputigena ATCC
           35185]
 gi|260863048|gb|EEX77548.1| PP-loop family protein [Selenomonas sputigena ATCC 35185]
 gi|329746993|gb|AEC00350.1| Conserved hypothetical protein CHP00268 [Selenomonas sputigena ATCC
           35185]
          Length = 278

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 40/183 (21%)

Query: 23  LVAVSGGSDSMGLLIA----LHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            VA+SGG DS  LL+A    L +          +  A        E   ++ +  + +  
Sbjct: 27  AVALSGGVDSAVLLMAAVRTLGAAHVAAVTAASELLA--------EGELEDAKRCASLA- 77

Query: 79  RLRIAHSVVSWKN-SKPQTGLMAAAR-----EARYALISEHAKTINATLIMTAHTFDDQL 132
              +  +++   + + P        R     + R+ ++   AK      ++     DD  
Sbjct: 78  --GVPLTILPADDLASPDVARNDERRCYYCKKRRFEMLIAWAKEHGFRRVLDGTNADD-- 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCE 190
                       +   GL+ + +   +     ++ P    R  + DIR       +    
Sbjct: 134 ----------AGDYRPGLAAIEELAPF-----VASPLKEARWTKCDIREAAKAWGVPVWS 178

Query: 191 DPS 193
            PS
Sbjct: 179 KPS 181


>gi|238753867|ref|ZP_04615227.1| GMP synthase [glutamine-hydrolyzing] [Yersinia ruckeri ATCC 29473]
 gi|238707855|gb|EEQ00213.1| GMP synthase [glutamine-hydrolyzing] [Yersinia ruckeri ATCC 29473]
          Length = 525

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAVARLREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLNALAGIDEPEAKRKTIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|304436679|ref|ZP_07396648.1| GMP synthase [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304370375|gb|EFM24031.1| GMP synthase [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 518

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 23/195 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++     +R  +     L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 205 SFVQKTIEELRQQIGGGRALCALSGGVDSSVAAVLLSKAI------GSQLTCVFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH 113
           R+   DEV  V        +    ++ ++          +P+        E    +  E 
Sbjct: 259 RKNEGDEVEAVFGRGGTYDVNFVRINARDRFYARLKGVTEPEQKRKIIGEEF-IRVFEEA 317

Query: 114 AKTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           A+ I A   ++    + D +E+     +    +    + G+ D + +     I  P    
Sbjct: 318 AREIGAVDFLVQGTIYPDVIESGL--GKSAVIKSHHNVGGLPDHVDFK---EIVEPLRLL 372

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 373 FKDEVRAAGRELGIP 387


>gi|253582748|ref|ZP_04859968.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251835324|gb|EES63865.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 302

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 37/194 (19%)

Query: 12  FVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           F+++L+      ++ VA SGG DS  LL A  + LS    GK K  A+++   L     +
Sbjct: 35  FLQNLMEKYTMENVAVAFSGGVDSSLLLKA--ACLSAVKNGK-KVYAVTMHTTLHPM--N 89

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM----AAAREARYALISEH---AKTINATL 121
           E+         +   H ++     + + G+           +  L  +    A+++    
Sbjct: 90  EIESSKKTAEEIGAEHLIIKVDELR-EAGIENNPVERCYLCKKYLFQKILDKAESLGIKT 148

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRS 179
           ++     DD      +   R       GL  + +       L I  P       + D+R 
Sbjct: 149 VLDGTNEDD------LHLFRP------GLKALRE-------LGIKSPLAESGFTKSDVRK 189

Query: 180 FLLQRNISWCEDPS 193
              +  +S  + PS
Sbjct: 190 LAEEYGLSVSKKPS 203


>gi|282855107|ref|ZP_06264439.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes J139]
 gi|282581695|gb|EFB87080.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes J139]
          Length = 524

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 218 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 271

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 272 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 331 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 385

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 386 GLELGLP--ED 394


>gi|242239492|ref|YP_002987673.1| tRNA-specific 2-thiouridylase MnmA [Dickeya dadantii Ech703]
 gi|242131549|gb|ACS85851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dickeya dadantii Ech703]
          Length = 370

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 35/133 (26%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS----- 74
             ++V +SGG DS      L           +K               D+  Y S     
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW----------EEDDDTEYCSAAADL 56

Query: 75  ----DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E R                  A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLCADYIATGH 129


>gi|223986594|ref|ZP_03636589.1| hypothetical protein HOLDEFILI_03911 [Holdemania filiformis DSM
           12042]
 gi|223961453|gb|EEF65970.1| hypothetical protein HOLDEFILI_03911 [Holdemania filiformis DSM
           12042]
          Length = 513

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 29/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L+A+SGG DS  +   LH  +        +   + +DH  LR+    E  
Sbjct: 209 IRAQVGTDKVLLALSGGVDSSVVAALLHKAI------GPQLYCMFIDHGLLRKG---EAE 259

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V       +++  + +             S P+        E  Y     + + A+  N
Sbjct: 260 SVMETFGRNMKLNLTKIDASKKFLDKLKGVSDPEQKRKIIGNEFVYTFDEEVKKLAEGEN 319

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 320 IHWLAQGTLYTDVIE------SGTQTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVR 373

Query: 179 SFLLQRNIS 187
               +  + 
Sbjct: 374 QLGKELGLP 382


>gi|126697100|ref|YP_001091986.1| PP family ATPase [Prochlorococcus marinus str. MIT 9301]
 gi|126544143|gb|ABO18385.1| ATP-utilizing enzymes of the PP-loop superfamily [Prochlorococcus
           marinus str. MIT 9301]
          Length = 274

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 62/191 (32%), Gaps = 38/191 (19%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++R ++++L     + +A SGG DS  +       L  ++      S    +  LRE A+
Sbjct: 18  TIRRYIKNL---DSVCIAYSGGVDSTLVASLAFEQLGSKAIAITGVSPALAN-TLREEAR 73

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATL 121
            + +++        + H  +          SK       A ++  +   +  +K +N  +
Sbjct: 74  RQAKWI-------GVKHLEIKTSELDQSSYSKNPKDRCFACKKELHKHTTYLSKKLNYKI 126

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRS 179
           ++     DD                   L      +       +  P  +    ++DIR 
Sbjct: 127 VLDGVNLDD-------------------LKDYRPGMQASKQAGVISPLAKFKVSKQDIRD 167

Query: 180 FLLQRNISWCE 190
                   W +
Sbjct: 168 ISRALGFPWWD 178


>gi|294630984|ref|ZP_06709544.1| GMP synthase [Streptomyces sp. e14]
 gi|292834317|gb|EFF92666.1| GMP synthase [Streptomyces sp. e14]
          Length = 526

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R LV     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 209 NVIEEQVAAIRELVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 262

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   + ++          R+          +   A 
Sbjct: 263 RKGETEQVEKDFVAATGVQLKVVDAEKRFLDALKGVSDPEEKRKIIGREFIRVFEQAQAE 322

Query: 121 LIMTAHTFDDQ---LE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPF 169
           +I       D+   +E     T+Y          G            +  DL   +  P 
Sbjct: 323 IIA------DEGPAVEFLVQGTLYPDVVESGGGTGAANIKSHHNVGGLPEDLEFKLIEPL 376

Query: 170 LRCRREDIRSFLLQRNIS 187
            +  ++++R    +  + 
Sbjct: 377 RKLFKDEVRMVGQELGLP 394


>gi|257082299|ref|ZP_05576660.1| hypothetical protein EFJG_00743 [Enterococcus faecalis E1Sol]
 gi|307287988|ref|ZP_07568021.1| hypothetical protein TIGR00268 [Enterococcus faecalis TX0109]
 gi|256990329|gb|EEU77631.1| hypothetical protein EFJG_00743 [Enterococcus faecalis E1Sol]
 gi|306501133|gb|EFM70440.1| hypothetical protein TIGR00268 [Enterococcus faecalis TX0109]
 gi|315027986|gb|EFT39918.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX2137]
 gi|315163772|gb|EFU07789.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX1302]
          Length = 278

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 84/279 (30%), Gaps = 72/279 (25%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            VR L     + VA SGG DS  LL  AL ++ ++         A+ V+  L   + DE 
Sbjct: 11  LVRELQKMDKLAVAYSGGIDSSYLLKKALDTLGAE------NVLAVVVNSEL--FSDDEF 62

Query: 71  RYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               D+ + L            +      + P +   +   +  Y  I    +     ++
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIVANNPNSWFYSK--KLLYKTIRSAIQKEGFDVL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSF 180
                 DD   T +    R   ++G                 +  P    +  + +IR  
Sbjct: 121 ADGMIMDDN--TDFRPGLRARDQEG-----------------VISPLQQAKLYKIEIRQL 161

Query: 181 LLQRNISWC----------------------EDPSNTDDRFER------VRVR--RFVRD 210
                IS                         D     +++ R      VRVR    +  
Sbjct: 162 AKDAGISNWSKVASCSIASRIPYGIKLTRSAIDQVFASEKYLREIGFPIVRVRAHHDLAR 221

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           I++     K+    + R K+ + +      Y+T  +   
Sbjct: 222 IEIPE--DKLSLLLENREKIADYLKKQGFNYVTFDLEGF 258


>gi|261403487|ref|YP_003247711.1| GMP synthase, large subunit [Methanocaldococcus vulcanius M7]
 gi|261370480|gb|ACX73229.1| GMP synthase, large subunit [Methanocaldococcus vulcanius M7]
          Length = 310

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 30/198 (15%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF   + IE     ++  +   + ++A+SGG DS    +  H  + D+       +A+ V
Sbjct: 1   MFDPKAFIEESVKEIKEQIGDRNAIIALSGGVDSSVAAVLTHKAIGDK------LTAVFV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAR---EARYAL 109
           D  L R+  K+EV        +L +   +V  K+      K         +   +    +
Sbjct: 55  DTGLMRKGEKEEVE--KTFKEKLEMNLIIVDAKDRFLNALKGVKDPEEKRKIIGKLFIDV 112

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E A+ I A +++      D +ET      R   +     S     + + + L +  P 
Sbjct: 113 FEEIAEKIKAEVLVQGTIAPDWIET------RGNIK-----SHHNVALPHGMVLEVVEPL 161

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 162 RELYKDEVRILARELGLP 179


>gi|255532078|ref|YP_003092450.1| tRNA-specific 2-thiouridylase MnmA [Pedobacter heparinus DSM 2366]
 gi|255345062|gb|ACU04388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter heparinus DSM 2366]
          Length = 363

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 54/238 (22%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ILVA+SGG DS    + LH    ++ +  I  +  + D+    ++  E      
Sbjct: 1   MSKKGRILVAMSGGVDSSVAAVMLH----EQGYEVIGLTMKTWDYATSGSSSKETGCCSL 56

Query: 74  ------SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALIS 111
                   +       H ++  ++      +        A R            ++  + 
Sbjct: 57  DSINDARTLAVNYGFPHYILDIRDEFGDFVIDNFVDEYLAGRTPNPCVLCNTHIKWEALL 116

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           + A  ++   I T H  +    D    V  + + +  ++   L G+    L         
Sbjct: 117 KRANKLDCEFIATGHYANIRQQDSGRYVISKGKDENKDQSYVLWGVSQENLSRTQF---- 172

Query: 168 PFLRCRREDIRSFL------------LQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213
           P     + +IR                   I +  D     + + R  ++  V D++ 
Sbjct: 173 PLGSFAKSEIRQMALDMGQEELAKKSESYEICFVPD-----NDY-RAFLKHKVEDLEQ 224


>gi|225435460|ref|XP_002282827.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 540

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 68/203 (33%), Gaps = 44/203 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEVR 71
            I V +SGG DS   L  LH+     +   +K          +E           +D+++
Sbjct: 85  KIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIW-------FQEDFENFWSECPWEDDLK 137

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAK 115
           Y   VC ++ +   VV   +   +  +     E R                +    +   
Sbjct: 138 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 197

Query: 116 TINATLIMTAHTFD------DQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           +     + + H  +      DQ++  +V   S+    ++   LS +    L      +  
Sbjct: 198 SKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKR----LIF 253

Query: 168 PFLRCRREDIRSFLLQRNISWCE 190
           P     ++++RS   + ++   +
Sbjct: 254 PLGCIPKDEVRSLATKLDLPNRD 276


>gi|20807253|ref|NP_622424.1| PP family ATPase [Thermoanaerobacter tengcongensis MB4]
 gi|20515760|gb|AAM24028.1| ATP-utilizing enzymes of the PP-loop superfamily
           [Thermoanaerobacter tengcongensis MB4]
          Length = 255

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 46/185 (24%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----KDEVRYVSDVC 77
           LVA SGG DS  L    +  L +         A+++       +     K E+     + 
Sbjct: 2   LVAFSGGVDSTFLAKVAYEELGE------DMLAVTI-------STPLHPKREIEESKKLA 48

Query: 78  SRLRIAHSVVSWKN-------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             L   H VV ++                   ++  ++ + + A+      I+     DD
Sbjct: 49  KVLGFPHLVVRYEEVLEIEEFKSNPLNRCYVCKKNLFSKLKDIAEERGFYYIVEGTNADD 108

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIRSFLLQRNISW 188
             +    R  R   ++                L I  P L     +E+IR F  + +++ 
Sbjct: 109 VND---FRPGRKALKE----------------LGILSPLLDCGITKEEIRLFSKEMDLTT 149

Query: 189 CEDPS 193
              PS
Sbjct: 150 WNKPS 154


>gi|307213208|gb|EFN88703.1| GMP synthase [glutamine-hydrolyzing] [Harpegnathos saltator]
          Length = 718

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R+ V    +L+ VSGG DS      LH  LS     K +  A+ +++   R+    E 
Sbjct: 233 YIRNTVGNKKVLLLVSGGVDSTVCAALLHKALS-----KEQVIALHINNGFMRKG---ET 284

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V    ++L +   VV+
Sbjct: 285 QSVEQSLAQLGVKLKVVN 302


>gi|298480213|ref|ZP_06998411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
 gi|298273494|gb|EFI15057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D22]
          Length = 361

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAER 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  +N   + 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R   + G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDY 161

Query: 173 RREDIRSFLLQRN 185
            +  +R +L ++ 
Sbjct: 162 TKVKVREYLAEKG 174


>gi|295086500|emb|CBK68023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens XB1A]
          Length = 361

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAER 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  +N   + 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R   + G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDY 161

Query: 173 RREDIRSFLLQRN 185
            +  +R +L ++ 
Sbjct: 162 TKVKVREYLAEKG 174


>gi|293370352|ref|ZP_06616907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
 gi|292634573|gb|EFF53107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
          Length = 361

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAER 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  +N   + 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R   + G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDY 161

Query: 173 RREDIRSFLLQRN 185
            +  +R +L ++ 
Sbjct: 162 TKVKVREYLAEKG 174


>gi|262408193|ref|ZP_06084740.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294806750|ref|ZP_06765577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|262353745|gb|EEZ02838.1| tRNA methyl transferase [Bacteroides sp. 2_1_22]
 gi|294446032|gb|EFG14672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 361

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAER 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  +N   + 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R   + G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDY 161

Query: 173 RREDIRSFLLQRN 185
            +  +R +L ++ 
Sbjct: 162 TKVKVREYLAEKG 174


>gi|237719106|ref|ZP_04549587.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451485|gb|EEO57276.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 361

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 57/193 (29%), Gaps = 51/193 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAER 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  +N   + 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVA 113

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRC 172
           T H              R   + G       D    D + ++ R           P    
Sbjct: 114 TGH------------YSRLEEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDY 161

Query: 173 RREDIRSFLLQRN 185
            +  +R +L ++ 
Sbjct: 162 TKVKVREYLAEKG 174


>gi|218135010|ref|ZP_03463814.1| hypothetical protein BACPEC_02915 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990395|gb|EEC56406.1| hypothetical protein BACPEC_02915 [Bacteroides pectinophilus ATCC
           43243]
          Length = 166

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 48/136 (35%), Gaps = 21/136 (15%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ ++++R +++SL     + VA S G DS  LL      L D         A++     
Sbjct: 21  MAKLDALREYLKSL---ESVAVAFSSGVDSTFLLKTAKDTLGD------NVIAVTA---- 67

Query: 63  RETA--KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHA 114
           R  +    E+    + C +  I H V   +       ++         ++  +  I E A
Sbjct: 68  RSCSFPGRELNEALEFCKKEGIRHFVCESEELSIDGFAQNPKNRCYLCKKELFRKIQEIA 127

Query: 115 KTINATLIMTAHTFDD 130
                  I      DD
Sbjct: 128 DENGIAAIAEGSNMDD 143


>gi|205821998|sp|A9L4G9|MNMA_SHEB9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 372

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++A  I   H     D  +  T  +R      ++   L  +    +         P  
Sbjct: 122 EILDADYIAMGHYVRRRDNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 178 ELEKHEVREIAKEMGL 193


>gi|169834334|ref|YP_001693654.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|205828976|sp|B1I833|MNMA_STRPI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168996836|gb|ACA37448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 373

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V  V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT---FDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+  TV  +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRRLAEEAGLA 189


>gi|160875703|ref|YP_001555019.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS195]
 gi|160861225|gb|ABX49759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS195]
 gi|315267892|gb|ADT94745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS678]
          Length = 392

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 30  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYCAAAEDLK 81

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 82  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 141

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++A  I   H     D  +  T  +R      ++   L  +    +         P  
Sbjct: 142 EILDADYIAMGHYVRRRDNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVG 197

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 198 ELEKHEVREIAKEMGL 213


>gi|15604175|ref|NP_220690.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia prowazekii str.
           Madrid E]
 gi|6226259|sp|Q9ZDM1|MNMA_RICPR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|3860867|emb|CAA14767.1| unknown [Rickettsia prowazekii]
 gi|292571906|gb|ADE29821.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia prowazekii Rp22]
          Length = 358

 Score = 52.2 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 73/210 (34%), Gaps = 43/210 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYV 73
           A I+VA+SGG DS  +   LH    +     ++      D+ +         A  ++   
Sbjct: 2   ATIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DYGIAVGKKNACCAGQDIYDA 57

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAKTI 117
             V ++L I H V+ ++N   ++ +                    +  ++  +   AK +
Sbjct: 58  KMVANKLGIPHYVLDYENKFKESVIDNFVDSYLHGETPLPCVQCNKSVKFRDLINTAKEL 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRD--YAEKGMGLSGMCD------TILYDLNLWISRPF 169
            A  + T H         Y+R       AE   GL    D      TI  +   ++S P 
Sbjct: 118 GADKLATGH---------YVRKINGYNGAELHTGLDTTKDQSYFLFTITREQLEYLSFPL 168

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               + + R    +  +   + P + D  F
Sbjct: 169 GGFTKYETRKLASKFGLDIADKPDSQDICF 198


>gi|324328299|gb|ADY23559.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 371

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 3   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 55  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 114

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 115 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 170 PLGELKKPQIREMAKEAGLA 189


>gi|228910232|ref|ZP_04074050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 200]
 gi|228849396|gb|EEM94232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 200]
          Length = 376

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMAKEAGLA 194


>gi|228917030|ref|ZP_04080590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228842637|gb|EEM87725.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 376

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMAKEAGLA 194


>gi|228902924|ref|ZP_04067065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 4222]
 gi|228967471|ref|ZP_04128500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228792248|gb|EEM39821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228856708|gb|EEN01227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis IBL 4222]
          Length = 376

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMAKEAGLA 194


>gi|229086959|ref|ZP_04219116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-44]
 gi|228696335|gb|EEL49163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-44]
          Length = 376

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYID-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMAKEAGLA 194


>gi|229186636|ref|ZP_04313797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BGSC 6E1]
 gi|228596895|gb|EEK54554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BGSC 6E1]
          Length = 376

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMAKEAGLA 194


>gi|228923148|ref|ZP_04086439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228941564|ref|ZP_04104113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228954681|ref|ZP_04116704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228960668|ref|ZP_04122313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228974494|ref|ZP_04135061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981088|ref|ZP_04141389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis Bt407]
 gi|229048104|ref|ZP_04193677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH676]
 gi|229071905|ref|ZP_04205116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus F65185]
 gi|229081661|ref|ZP_04214156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock4-2]
 gi|229111869|ref|ZP_04241415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-15]
 gi|229129677|ref|ZP_04258645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-Cer4]
 gi|229146967|ref|ZP_04275331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST24]
 gi|229152600|ref|ZP_04280789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1550]
 gi|229180672|ref|ZP_04308012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 172560W]
 gi|229192608|ref|ZP_04319569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 10876]
 gi|228590915|gb|EEK48773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 10876]
 gi|228602817|gb|EEK60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 172560W]
 gi|228630861|gb|EEK87501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1550]
 gi|228636566|gb|EEK93032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST24]
 gi|228653794|gb|EEL09664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-Cer4]
 gi|228671625|gb|EEL26923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-15]
 gi|228701665|gb|EEL54156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock4-2]
 gi|228711201|gb|EEL63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus F65185]
 gi|228723259|gb|EEL74631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH676]
 gi|228778629|gb|EEM26895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis Bt407]
 gi|228785211|gb|EEM33223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228799032|gb|EEM46004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228805008|gb|EEM51604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228818120|gb|EEM64196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228836527|gb|EEM81877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 376

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMAKEAGLA 194


>gi|218899565|ref|YP_002447976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9842]
 gi|218543622|gb|ACK96016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9842]
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 4   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 55

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 56  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 115

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 116 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 170

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 171 PLGELKKPQIREMAKEAGLA 190


>gi|196039389|ref|ZP_03106695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus NVH0597-99]
 gi|206976034|ref|ZP_03236944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus H3081.97]
 gi|217961886|ref|YP_002340456.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus AH187]
 gi|218905591|ref|YP_002453425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH820]
 gi|225866378|ref|YP_002751756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB102]
 gi|196030016|gb|EDX68617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus NVH0597-99]
 gi|206745786|gb|EDZ57183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus H3081.97]
 gi|217066211|gb|ACJ80461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH187]
 gi|218535576|gb|ACK87974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH820]
 gi|225789110|gb|ACO29327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB102]
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 4   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 55

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 56  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 115

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 116 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 170

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 171 PLGELKKPQIREMAKEAGLA 190


>gi|196044752|ref|ZP_03111986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB108]
 gi|196024240|gb|EDX62913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 03BB108]
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 4   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 55

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 56  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 115

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 116 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 170

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 171 PLGELKKPQIREMAKEAGLA 190


>gi|165872748|ref|ZP_02217376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0488]
 gi|167636496|ref|ZP_02394793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0442]
 gi|167638584|ref|ZP_02396860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0193]
 gi|170689637|ref|ZP_02880819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0465]
 gi|170709396|ref|ZP_02899807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0389]
 gi|177653267|ref|ZP_02935519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0174]
 gi|190566853|ref|ZP_03019769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227817175|ref|YP_002817184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. CDC 684]
 gi|229601635|ref|YP_002868683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0248]
 gi|164711524|gb|EDR17073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0488]
 gi|167513432|gb|EDR88802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0193]
 gi|167528089|gb|EDR90886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0442]
 gi|170125695|gb|EDS94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0389]
 gi|170666407|gb|EDT17188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0465]
 gi|172081549|gb|EDT66621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0174]
 gi|190561844|gb|EDV15813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227004048|gb|ACP13791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. CDC 684]
 gi|229266043|gb|ACQ47680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. A0248]
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 4   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 55

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 56  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 115

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 116 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 170

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 171 PLGELKKPQIREMAKEAGLA 190


>gi|118479554|ref|YP_896705.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis str. Al
           Hakam]
 gi|228929441|ref|ZP_04092462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228935717|ref|ZP_04098530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948110|ref|ZP_04110394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228987648|ref|ZP_04147762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229093467|ref|ZP_04224570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-42]
 gi|229123937|ref|ZP_04253129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 95/8201]
 gi|229141133|ref|ZP_04269675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST26]
 gi|229158012|ref|ZP_04286083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 4342]
 gi|118418779|gb|ABK87198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis str. Al Hakam]
 gi|228625465|gb|EEK82221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 4342]
 gi|228642411|gb|EEK98700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus BDRD-ST26]
 gi|228659239|gb|EEL14887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus 95/8201]
 gi|228689938|gb|EEL43742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-42]
 gi|228772108|gb|EEM20560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228811468|gb|EEM57805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823955|gb|EEM69774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830229|gb|EEM75845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 376

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMAKEAGLA 194


>gi|73919895|sp|Q812R6|MNMA_BACCR RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 3   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 55  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 114

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 115 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 170 PLGELKKPQIREMAKEAGLA 189


>gi|30022472|ref|NP_834103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 14579]
 gi|206969454|ref|ZP_03230408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1134]
 gi|296504889|ref|YP_003666589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis BMB171]
 gi|29898030|gb|AAP11304.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Bacillus cereus ATCC 14579]
 gi|206735142|gb|EDZ52310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1134]
 gi|296325941|gb|ADH08869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis BMB171]
 gi|326942178|gb|AEA18074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 4   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 55

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 56  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 115

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 116 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 170

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 171 PLGELKKPQIREMAKEAGLA 190


>gi|42783525|ref|NP_980772.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus ATCC 10987]
 gi|73919894|sp|Q730D7|MNMA_BACC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|42739454|gb|AAS43380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus ATCC 10987]
          Length = 371

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 3   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 55  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 114

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 115 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 170 PLGELKKPQIREMAKEAGLA 189


>gi|30264466|ref|NP_846843.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Ames]
 gi|47529924|ref|YP_021273.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187287|ref|YP_030539.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Sterne]
 gi|254684152|ref|ZP_05148012.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254736499|ref|ZP_05194205.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741537|ref|ZP_05199224.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Kruger
           B]
 gi|254751364|ref|ZP_05203401.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Vollum]
 gi|254757696|ref|ZP_05209723.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str.
           Australia 94]
 gi|73919893|sp|Q81JE5|MNMA_BACAN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|30259124|gb|AAP28329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. Ames]
 gi|47505072|gb|AAT33748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181214|gb|AAT56590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis str. Sterne]
          Length = 371

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 3   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 55  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 114

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 115 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 170 PLGELKKPQIREMAKEAGLA 189


>gi|65321763|ref|ZP_00394722.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Bacillus anthracis str. A2012]
          Length = 376

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMAKEAGLA 194


>gi|47566584|ref|ZP_00237406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9241]
 gi|49481478|ref|YP_038446.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141111|ref|YP_085718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus E33L]
 gi|222097839|ref|YP_002531896.1| tRNA-specific 2-thiouridylase mnma [Bacillus cereus Q1]
 gi|254724677|ref|ZP_05186460.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A1055]
 gi|300119218|ref|ZP_07056915.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
 gi|301055904|ref|YP_003794115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus anthracis CI]
 gi|71658010|sp|Q634E9|MNMA_BACCZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|73919896|sp|Q6HDD0|MNMA_BACHK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205814924|sp|A0RJ05|MNMA_BACAH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811444|sp|B9IYG1|MNMA_BACCQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|47556614|gb|EAL14946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus G9241]
 gi|49333034|gb|AAT63680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51974580|gb|AAU16130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus E33L]
 gi|221241897|gb|ACM14607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Q1]
 gi|298723438|gb|EFI64183.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1]
 gi|300378073|gb|ADK06977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 371

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 3   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 55  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 114

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 115 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 170 PLGELKKPQIREMAKEAGLA 189


>gi|315106189|gb|EFT78165.1| GMP synthase protein [Propionibacterium acnes HL030PA1]
          Length = 517

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  D    +  P     ++++R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDFQFSLVEPLRTLFKDEVRAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|257413240|ref|ZP_04742446.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis L1-82]
 gi|257204162|gb|EEV02447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis L1-82]
 gi|291539633|emb|CBL12744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseburia intestinalis XB6B4]
          Length = 363

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 48/201 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETAK 67
             ++V +SGG DS      L                 +  F + +         L   A 
Sbjct: 8   KKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCC---GLS--AV 62

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           D+ R V+D   RL I + V+++K    +                    A  R  ++  + 
Sbjct: 63  DDARRVAD---RLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALL 119

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WI 165
             +  I A  I T H    ++E    +           ++ + D      NL        
Sbjct: 120 NRSLAIGADYIATGHYA--RIE----QLSNGRYAIKNSVTAVKDQTYALYNLTQEQLSHT 173

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P     +++IR    +  +
Sbjct: 174 LMPVGAYHKDEIRKIAEEIGL 194


>gi|28198570|ref|NP_778884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Temecula1]
 gi|182681251|ref|YP_001829411.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M23]
 gi|32130276|sp|Q87DM0|MNMA_XYLFT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828984|sp|B2I9X8|MNMA_XYLF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28056654|gb|AAO28533.1| tRNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|182631361|gb|ACB92137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa M23]
 gi|307579701|gb|ADN63670.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 379

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+VA+SGG DS      L+S         +     + D   +  A+++ R    VC  L
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQREA--IAGLFMRNWTDDGNGQCHAEEDRRDAVAVCGIL 62

Query: 81  RIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEHAKTINATLIMT 124
            IA     + +   Q      L   A            RE ++    E A+ + A  I T
Sbjct: 63  GIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRIAT 122

Query: 125 AHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            H    ++E        +R      ++   L  +    L         P     ++ +R 
Sbjct: 123 GHYA--RIEHYRQRWHLLRGADRSKDQSYFLHQLGQEQLAAT----LFPIGDLEKQQLRQ 176

Query: 180 FLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
              Q  +     +D +      ER   R F++   L A   +++  Q+ R+ 
Sbjct: 177 LAHQTGLPTHAKKDSTGICFIGERNF-REFLKQY-LPAQPGEIRDPQEQRIA 226


>gi|322390500|ref|ZP_08064018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 903]
 gi|321142774|gb|EFX38234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis ATCC 903]
          Length = 373

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 61/200 (30%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISR 167
            T+ A  + T H    + D   E   +   R      ++   LS +    L         
Sbjct: 117 MTLGADYVATGHYARVSRD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  ++
Sbjct: 170 PLGHLEKPEVRRLAEEAGLA 189


>gi|170780979|ref|YP_001709311.1| GMP synthase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155547|emb|CAQ00659.1| GMP synthase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 526

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V  A ++  +SGG DS      +H  + D      + + + VDH  LR+  + +V 
Sbjct: 215 IRAQVGDARVICGLSGGVDSAVAAAIVHRAVGD------QLTCVFVDHGLLRQDERRQVE 268

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAARE--------ARYALISEHA 114
              D  +   +    V   +           P+       RE        A   ++   A
Sbjct: 269 --EDYVAATGVRLVTVDAADQFLDGLAGVTDPEAKRKIIGREFIRSFEGAAEALVLEAKA 326

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  ++    + D +E+             +        +  DL   +  P     +
Sbjct: 327 DGEPIRFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLKFELVEPLRTLFK 381

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 382 DEVRAIGRELGLP 394


>gi|114566016|ref|YP_753170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122318873|sp|Q0AZQ5|MNMA_SYNWW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114336951|gb|ABI67799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 338

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 42/212 (19%)

Query: 24  VAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           VAV  SGG DS    + L     ++ +     + + +        + E     + + + L
Sbjct: 3   VAVLMSGGIDSTVSALLL----REQGYEVTGLTMVHL--------EREAGEKAARIANEL 50

Query: 81  RIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTINATLIMT 124
           +I H VV  +       +    R                E ++ L+ + A  + A  + +
Sbjct: 51  QIEHKVVDLREPFQSAVVDYFCREYEQGHTPNPCVKCNEEIKFGLLLKAALDLGADKVAS 110

Query: 125 AHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            H      DD+ +    R  +    +      +       L+  I  P    R+E++R  
Sbjct: 111 GHYARIDYDDKSQ--CYRLMKGVDPRKDQSYFLYRLKQQQLSRLIF-PLGGYRKEEVREM 167

Query: 181 LLQRNISWCEDPSNTDDRFE----RVRVRRFV 208
             + ++   E+  + +  F     R  +R  V
Sbjct: 168 ARRYHLQLAEEKESQEVCFIPGDYREFIRPHV 199


>gi|325290764|ref|YP_004266945.1| GMP synthase (glutamine-hydrolyzing) [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324966165|gb|ADY56944.1| GMP synthase (glutamine-hydrolyzing) [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 510

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 20/183 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS    + +H  + D      + + I VDH   R+    +V+
Sbjct: 209 IRQRVGGKKVLCALSGGVDSSVAAVLVHKAIGD------QLTCIYVDHGFMRKDESVQVK 262

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTIN-ATLIMT 124
             +       L    +   +             R+        L  + A+ +     ++ 
Sbjct: 263 KTFTEQFHLNLDFVEADERFMAKVSGVSEPEEKRKLIGNEFIRLFEDEARKLGQVDFLVQ 322

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
              + D +E            + +        +  D+   +  P     ++++R   ++ 
Sbjct: 323 GTLYPDIVE------SGTETAETIKTHHNVGGLPEDMKFELIEPLRMLFKDEVRKVGIEL 376

Query: 185 NIS 187
            + 
Sbjct: 377 GLP 379


>gi|229198523|ref|ZP_04325227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1293]
 gi|228585026|gb|EEK43140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus m1293]
          Length = 376

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 40/199 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P    ++  IR    +  +
Sbjct: 175 PLGELKKPQIREMAKEAGL 193


>gi|145298399|ref|YP_001141240.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166234842|sp|A4SKS0|MNMA_AERS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|142851171|gb|ABO89492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 368

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 53/192 (27%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A  ++   
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDTDEYCSASQDLADA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC +L +    +++                +  R               A +   A+ 
Sbjct: 60  KAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEE 119

Query: 117 INATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + AT I T H    DD   T + R  R           +       +   +  P     +
Sbjct: 120 LGATYIATGHYVRRDDS--TGHPRLLRGLDSNKDQSYFLYTLSEKQVGQSLF-PVGDLEK 176

Query: 175 EDIRSFLLQRNI 186
            ++R    Q ++
Sbjct: 177 PEVRRIAEQLDL 188


>gi|305667726|ref|YP_003864013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maribacter sp. HTCC2170]
 gi|88709776|gb|EAR02009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maribacter sp. HTCC2170]
          Length = 396

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 57/200 (28%), Gaps = 45/200 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             +++ +SGG DS      L     +     +K           + +    +E  ++ D 
Sbjct: 2   KKVVIGLSGGVDSSVAAYLLKEQGYEVIGLFMK--------NWHDDSVTISEECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V       +                       RE ++ +  + A
Sbjct: 54  NDALIVAEKLGIPFQTVDLSVEYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFLKIA 113

Query: 115 KTINATLIMTAHTF------DDQL-ETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             + A  + T H        +D+  ET   +  + D  ++   L  +    L        
Sbjct: 114 LQLGADYVATGHYCRKGTLVNDKGEETFQLLSGKDDNKDQSYFLCQLSQEQLSKT----L 169

Query: 167 RPFLRCRREDIRSFLLQRNI 186
            P     + ++R       +
Sbjct: 170 FPIGNLTKPEVRQIAADNAL 189


>gi|327405404|ref|YP_004346242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fluviicola taffensis DSM 16823]
 gi|327320912|gb|AEA45404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fluviicola taffensis DSM 16823]
          Length = 392

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 41/196 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLR------ETAK 67
             ++V +SGG DS      L     +      R++     +       L       + + 
Sbjct: 2   KRVVVGLSGGVDSSVTAHLLQQEGYEVIGLFMRNWHDETVT-------LSNDCPWIDDSN 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALIS 111
           D +     +  +L I   V+       +           A           RE ++ +  
Sbjct: 55  DALL----IAEQLGIPFQVLDLSKEYKERIVDYMFAEYEAGRTPNPDVLCNREIKFDVFL 110

Query: 112 EHAKTINATLIMTAHT-FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + A  + A  + T H       E                   +C      L+  +  P  
Sbjct: 111 KAAMELGADFVATGHYCRKITTEDGIHHLLTGLDPNKDQSYFLCQLSQDQLSKALF-PIG 169

Query: 171 RCRREDIRSFLLQRNI 186
             ++ ++R+   +  +
Sbjct: 170 NLQKSEVRAIAKEIGL 185


>gi|281354848|ref|ZP_06241342.1| GMP synthase, large subunit [Victivallis vadensis ATCC BAA-548]
 gi|281317728|gb|EFB01748.1| GMP synthase, large subunit [Victivallis vadensis ATCC BAA-548]
          Length = 479

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 63/185 (34%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +RS V    +++ +SGG DS  +   +H  +        + + + V+H  LR+    E  
Sbjct: 176 IRSQVGGQKVVLGLSGGVDSSVVAALIHKAIGK------QLTCVFVNHGLLRKN---EPE 226

Query: 72  YVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREAR----YALISEHAKTINATLI 122
            V +       +    V     + +           R+        + +E A  ++A  +
Sbjct: 227 MVQEIFARNFDMNLCYVDASDRFLDKLKGVSDPEQKRKVIGKEFIEVFAEAAAKVDAPFL 286

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D LE++ +          +        +  ++   +  P  R  ++++R    
Sbjct: 287 GQGTIYPDILESIPLD---GNPNGVIKSHHNVGGLPENMKFKLVEPVERLFKDEVREVGR 343

Query: 183 QRNIS 187
              + 
Sbjct: 344 MLGLP 348


>gi|154150640|ref|YP_001404258.1| exsB protein [Candidatus Methanoregula boonei 6A8]
 gi|167016434|sp|A7I7A4|QUEC_METB6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|153999192|gb|ABS55615.1| exsB protein [Methanoregula boonei 6A8]
          Length = 217

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 33/134 (24%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS  LL  L            + SAI+ D+   +  K E+      C++L 
Sbjct: 4   VLI-LSGGMDSTTLLYDLID-------QGYEVSAITFDY--HQKHKKEIACAQKTCAKLS 53

Query: 82  IAHSVV--SWKNSKPQTGLMAAAR---EARYA------------------LISEHAKTIN 118
           I H +V  S  N    + L  A R   E  YA                  L + +A  I 
Sbjct: 54  IPHKIVNLSVLNDLAPSSLTRADRDVPEGHYAEESMKQTVVPNRNMVFLSLAASYAIGIG 113

Query: 119 ATLIMTAHTFDDQL 132
           A  +  A    D  
Sbjct: 114 AGHLFYAAHAGDHA 127


>gi|322388413|ref|ZP_08062016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|321140726|gb|EFX36228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus infantis ATCC 700779]
          Length = 373

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 61/197 (30%), Gaps = 39/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +    +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHA 114
           + V+ V  ++ I +  V+++            A  R  R             +    ++A
Sbjct: 57  KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            T+ A  + T H      D+      +R   +  ++   LS +    L         P  
Sbjct: 117 MTLGADYVATGHYARVLRDEDGVVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRKLAEEAGLA 189


>gi|289810023|ref|ZP_06540652.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 178

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 24/153 (15%)

Query: 263 LLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWIT 319
               +LR   A+      +P   ++ER+       +     C+  G   I R  + LW  
Sbjct: 2   RRAAILRRWLAM--RNAPMPSRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWI 59

Query: 320 RAVR-NLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---R 375
           + V     T + +P   T          L   L  +      +   P     +  +    
Sbjct: 60  KTVAGQHETTVAWPVWQT-------PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAP 112

Query: 376 ALSSMPSKEGGKPL--------LAPFSRFMTKF 400
            L  +  + GG+ L        + P+ R  T  
Sbjct: 113 GLLHIVGRHGGRKLKKIWQEQGIPPWRRDTTPL 145


>gi|205821993|sp|A6WP69|MNMA_SHEB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++A  I   H     D  +  T  +R      ++   L  +    +         P  
Sbjct: 122 EILDADYIAMGHYVRRRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 178 ELEKHEVREIAKEMGL 193


>gi|217973050|ref|YP_002357801.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS223]
 gi|205821978|sp|A3D5F8|MNMA_SHEB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811460|sp|B8E945|MNMA_SHEB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|217498185|gb|ACK46378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS223]
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++A  I   H     D  +  T  +R      ++   L  +    +         P  
Sbjct: 122 EILDADYIAMGHYVRRRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 178 ELEKHEVREIAKEMGL 193


>gi|153000990|ref|YP_001366671.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS185]
 gi|151365608|gb|ABS08608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS185]
          Length = 392

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 30  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYCAAAEDLK 81

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 82  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 141

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++A  I   H     D  +  T  +R      ++   L  +    +         P  
Sbjct: 142 EILDADYIAMGHYVRRRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVG 197

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 198 ELEKHEVREIAKEMGL 213


>gi|77463571|ref|YP_353075.1| GMP synthase [Rhodobacter sphaeroides 2.4.1]
 gi|221639412|ref|YP_002525674.1| GMP synthase [Rhodobacter sphaeroides KD131]
 gi|91206826|sp|Q3J210|GUAA_RHOS4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800112|sp|B9KT27|GUAA_RHOSK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77387989|gb|ABA79174.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacter sphaeroides
           2.4.1]
 gi|221160193|gb|ACM01173.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodobacter sphaeroides KD131]
          Length = 518

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR   A+  V
Sbjct: 214 IRAQVGDQKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLGEAEQVV 267

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
           +   D      +        +         S P+       R          A    AT 
Sbjct: 268 KMFRD---HYNMPLIHADESDLFLGALEGVSDPEVKRKTIGRLFIDVFQKHAADVGGATF 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 325 LAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALG 381

Query: 182 LQRNIS 187
            +  + 
Sbjct: 382 RELGLP 387


>gi|126174691|ref|YP_001050840.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS155]
 gi|125997896|gb|ABN61971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella baltica OS155]
          Length = 392

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 30  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYCAAAEDLK 81

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 82  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 141

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++A  I   H     D  +  T  +R      ++   L  +    +         P  
Sbjct: 142 EILDADYIAMGHYVRRRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVG 197

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 198 ELEKHEVREIAKEMGL 213


>gi|297746327|emb|CBI16383.3| unnamed protein product [Vitis vinifera]
          Length = 544

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 68/203 (33%), Gaps = 44/203 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEVR 71
            I V +SGG DS   L  LH+     +   +K          +E           +D+++
Sbjct: 89  KIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIW-------FQEDFENFWSECPWEDDLK 141

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAK 115
           Y   VC ++ +   VV   +   +  +     E R                +    +   
Sbjct: 142 YAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIS 201

Query: 116 TINATLIMTAHTFD------DQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           +     + + H  +      DQ++  +V   S+    ++   LS +    L      +  
Sbjct: 202 SKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKR----LIF 257

Query: 168 PFLRCRREDIRSFLLQRNISWCE 190
           P     ++++RS   + ++   +
Sbjct: 258 PLGCIPKDEVRSLATKLDLPNRD 280


>gi|289427690|ref|ZP_06429402.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes J165]
 gi|295131290|ref|YP_003581953.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289159181|gb|EFD07373.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes J165]
 gi|291375776|gb|ADD99630.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes SK137]
          Length = 524

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 218 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 271

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 272 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 331 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 385

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 386 GLELGLP--ED 394


>gi|157273520|gb|ABV27419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Chloracidobacterium thermophilum]
          Length = 392

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 61/206 (29%), Gaps = 53/206 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVD-HCL----RETAKDEVRY 72
            I VA+SGG DS      L     D     ++      I+VD        R  + D++  
Sbjct: 4   RIAVAMSGGVDSSTAAALLKEQGYDVVGFSMQLWNQRRINVDAEGNPLPSRCCSLDDLYD 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-----------------------YAL 109
              V   L I   V++++           AR  R                       +  
Sbjct: 64  ARAVAEALGIPFYVLNFEE-------EFEARVVRPFVVSYLNGNTPSPCVACNSRMKFDT 116

Query: 110 ISEHAKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-- 163
           +   A+ + A  + T H     F+D          R    KG  L       L++L    
Sbjct: 117 LVALARDVGAAKVATGHYARVQFNDTT-------GRWELRKGRDLHKDQSYFLFELTQEQ 169

Query: 164 --WISRPFLRCRREDIRSFLLQRNIS 187
             W   P     + + R+   +  + 
Sbjct: 170 LAWALFPLGELSKAETRALARRYGLP 195


>gi|303241844|ref|ZP_07328339.1| GMP synthase, large subunit [Acetivibrio cellulolyticus CD2]
 gi|302590619|gb|EFL60372.1| GMP synthase, large subunit [Acetivibrio cellulolyticus CD2]
          Length = 511

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 25/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     ++  V    +L A+SGG DS    + ++  +        + + I VDH  L
Sbjct: 200 SFVEQSIKAIKEKVGDKKVLCALSGGVDSSVAAVLINKAIGK------QLTCIFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH 113
           R+   D+V  V    ++  I     + ++           P+T       E    +    
Sbjct: 254 RKYEGDQVEEVFR--NQYDINLIRANVEDRFMDRLAGVTDPETKRKIIGEEF-IRVFEVE 310

Query: 114 AKTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           AK I A   ++    + D +E+    +    +   +G  G+ D + +     I  P    
Sbjct: 311 AKKIGAVDFLVQGTIYPDVIESGLGNAAVIKSHHNVG--GLPDYVDFK---EIIEPLRNL 365

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 366 FKDEVRRVGTELGIP 380


>gi|298368617|ref|ZP_06979935.1| GMP synthase (glutamine-hydrolyzing) [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282620|gb|EFI24107.1| GMP synthase (glutamine-hydrolyzing) [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 521

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQ-------TGLMAAAREARYALISEHAKT 116
               E + V D     L +   V+     +         T      R      I      
Sbjct: 258 N---EGKMVMDMFARNLGVK--VIHVDAEEQFMAKLAGVTDPEKKRRIIGAEFIEVFDAE 312

Query: 117 I----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                NA  +     + D +E+      +      +        +  ++ L +  P    
Sbjct: 313 EKKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLQLLEPLRDL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 370 FKDEVRELGVALGLP 384


>gi|302879502|ref|YP_003848066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gallionella capsiferriformans ES-2]
 gi|302582291|gb|ADL56302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gallionella capsiferriformans ES-2]
          Length = 366

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 46/201 (22%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     ++V +SGG DS    + L     D     +K               D   Y S 
Sbjct: 1   MNKNKRVVVGMSGGVDSSVTALLLKQQGYDVIGLFMKNW----------EDDDNSEYCSS 50

Query: 75  --------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALI 110
                    V   + I    V++          A  RE +                +   
Sbjct: 51  RQDLLDAVSVADTIGIPIEAVNFAKEYKDRVFSAFLREYQSGRTPNPDILCNAEIKFKAF 110

Query: 111 SEHAKTINATLIMTAHTFDDQLETV-----YMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            +HA  + A  I T H    Q+  V      +++     ++   L  +    L      +
Sbjct: 111 LDHAIELGADTIATGHYA--QVREVDGLFQLLKATDASKDQSYFLHRLNQAQLSRAMFPL 168

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            R      + +IR    Q  +
Sbjct: 169 GRLL----KSEIRKIAEQHGL 185


>gi|157813154|gb|ABV81322.1| putative GMP synthetase [Tanystylum orbiculare]
          Length = 197

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++  V    +LV VSGG DS      LH  L        +  A+ +D+   R   K E 
Sbjct: 36  YIQESVGSNKVLVLVSGGVDSTVCAALLHKALEQN-----QVIAVHIDNGFMR---KQES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V +   +L +  +V++
Sbjct: 88  KQVEESLRKLGLQLTVIN 105


>gi|189425988|ref|YP_001953165.1| ExsB family protein [Geobacter lovleyi SZ]
 gi|189422247|gb|ACD96645.1| ExsB family protein [Geobacter lovleyi SZ]
          Length = 261

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYV 73
          L     + VA SGG DS  LL   H  L DR        AI++D  +  R+   D  R+ 
Sbjct: 11 LTRSTPLAVAFSGGVDSTLLLKVAHDTLGDR------CCAITIDAPYHFRQEQDDATRFA 64

Query: 74 SDVCSRLRIAHSVVSW 89
            +     + H ++ +
Sbjct: 65 RQI----GVRHLIIPF 76


>gi|31544324|ref|NP_852902.1| multifunctional FAD synthetase/riboflavin kinase/tRNA-specific
           2-thiouridylase [Mycoplasma gallisepticum str. R(low)]
 gi|81572856|sp|Q7NBZ0|MNMA_MYCGA RecName: Full=Trifunctional protein ribF/mnmA; Includes: RecName:
           Full=FMN adenylyltransferase; AltName: Full=FAD
           pyrophosphorylase; AltName: Full=FAD synthase; Includes:
           RecName: Full=Riboflavin kinase; AltName:
           Full=Flavokinase; Includes: RecName: Full=tRNA-specific
           2-thiouridylase mnmA
 gi|31541168|gb|AAP56470.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase,
           tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum
           str. R(low)]
 gi|284930363|gb|ADC30302.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase,
           tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum
           str. R(high)]
          Length = 657

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 61/213 (28%), Gaps = 41/213 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAI--S 57
            ++ FF +       ++VA+SGG DS      L                  + F  +   
Sbjct: 276 AALSFFHKQ--EKPKVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFELLSDH 333

Query: 58  VDHCLRE-TAKDEVRYVSDVCSRLRIAHS---------------VVSWKNSKPQTGLMAA 101
            D  ++   AK +      +C +L+I                  V+              
Sbjct: 334 ADDQIQGCDAKQDYEDTQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTPNPDVL 393

Query: 102 AREA-RYALISEHAKTINAT--LIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGM 153
             +  ++       +        I   H     T DD  E   + ++    ++   L+ +
Sbjct: 394 CNQFGKFGWFINALRKQFGDDIKIAFGHYAKLITKDD--EVFLVHTKDHNKDQTYFLTML 451

Query: 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
               L +    I  P     +  +R    Q N+
Sbjct: 452 KKEQLKN----IIFPLSELDKPTVREIAKQANL 480


>gi|163856396|ref|YP_001630694.1| GMP synthase [Bordetella petrii DSM 12804]
 gi|226738391|sp|A9IKK0|GUAA_BORPD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|163260124|emb|CAP42425.1| GMP synthase [Bordetella petrii]
          Length = 531

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 24/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 215 EAVAR-IREQVGSDEVILGLSGGVDSSVAAALIHKAIGD------QLTCVFVDHGLLR-- 265

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
             DE + V       + +    V             + P+       RE      +E  K
Sbjct: 266 -LDEGKQVMQTFAENMGVKIIHVDATEQFMGKLAGQADPEAKRKIIGREFVEVFQAEAGK 324

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +     + D +E+      +      +        +   LNL +  P     ++
Sbjct: 325 LKSAKWLAQGTIYPDVIES---AGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFKD 381

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 382 EVRELGVALGLPP 394


>gi|15895957|ref|NP_349306.1| GMP synthase [Clostridium acetobutylicum ATCC 824]
 gi|24211761|sp|Q97FM9|GUAA_CLOAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|15025732|gb|AAK80646.1|AE007767_11 GMP synthase [Clostridium acetobutylicum ATCC 824]
 gi|325510109|gb|ADZ21745.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Clostridium acetobutylicum EA 2018]
          Length = 510

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L A+SGG DS    + +H  +        + + + VDH  LR   KDE  
Sbjct: 209 IKDIVGDKKVLCALSGGVDSSVAAVLVHKAIGK------QLTCVFVDHGLLR---KDEGD 259

Query: 72  YVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAKTIN-ATL 121
            V  +  +   + +       +      G+    R+ +        +  E A  +     
Sbjct: 260 QVESIFRKQFDMNLIRVNAKDRFLGKLKGISDPERKRKIIGEEFIRVFEEEANKLGQIDF 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R+  
Sbjct: 320 LVQGTIYPDVVE------SGTDTSATIKSHHNVGGLPEDMQFELIEPLRELFKDEVRAVG 373

Query: 182 LQRNISW 188
            +  I  
Sbjct: 374 EELGIPH 380


>gi|330900616|gb|EGH32035.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 366

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 59/194 (30%), Gaps = 38/194 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLIEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + A LI T H     D    T  ++      ++   L  +    +         P     
Sbjct: 114 LGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELE 169

Query: 174 REDIRSFLLQRNIS 187
           + ++R+   +  ++
Sbjct: 170 KPEVRAIAEKHGLA 183


>gi|229055099|ref|ZP_04195529.1| GMP synthase, large subunit [Bacillus cereus AH603]
 gi|228721247|gb|EEL72773.1| GMP synthase, large subunit [Bacillus cereus AH603]
          Length = 515

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R   KDE   V    S    + +       +      G+            E  Y    E
Sbjct: 259 R---KDEAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            ++      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASRLKGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|254428365|ref|ZP_05042072.1| ExsB family [Alcanivorax sp. DG881]
 gi|196194534|gb|EDX89493.1| ExsB family [Alcanivorax sp. DG881]
          Length = 523

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           +R  V    +++ +SGG DS  +   LH  + D      + + + VD+ L   +     +
Sbjct: 219 IREQVGTDEVILGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRHQEGDQVM 272

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
                    + +    V  +++        A  E +  +I          E  K  NA  
Sbjct: 273 EM---FADNMGVKVIRVDAEDNFLGKLAGEADPELKRKIIGNTFIDIFDEEAGKLENANW 329

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + +      +        +  D+ L +  P     ++++R   
Sbjct: 330 LAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKIG 386

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 387 LELGLPY 393


>gi|148270790|ref|YP_001245250.1| ExsB family protein [Thermotoga petrophila RKU-1]
 gi|147736334|gb|ABQ47674.1| ExsB family protein [Thermotoga petrophila RKU-1]
          Length = 303

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 50/182 (27%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDV 76
               + VA SGG DS      L ++L+  + G+ +   ++VD        +     V + 
Sbjct: 2   KDGKLYVAFSGGKDSS-----LVAILAKMALGEERVELVTVD--WSPYTYERSREIVRNF 54

Query: 77  CSRLRIAHSVVS-----WKNSKPQTGLMAAAREA------RYALISEHAKTINATLIMTA 125
             +  + H+ +       K  +      A  R+       RYA            L+ + 
Sbjct: 55  AEKHGLKHTFIPSNRMQEKVWRHGPSCNACTRDVKTVLVKRYA---------QGHLVASG 105

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
               D                     G     ++D    +  P  R  +E+I   L    
Sbjct: 106 ANASD-------------------SWGKTGLKVFDG---VYSPLCRVGKEEINEMLKFLG 143

Query: 186 IS 187
           + 
Sbjct: 144 LE 145


>gi|331002457|ref|ZP_08325975.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330410273|gb|EGG89707.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 363

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 60/202 (29%), Gaps = 48/202 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------ 72
              ++V +SGG DS      L     D +   ++             ++DE         
Sbjct: 3   KKKVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIW----------QSEDEEDMSGSGGC 52

Query: 73  --------VSDVCSRLRIAHSVVSWKNSKPQT------GLMAAARE-------ARYALIS 111
                      V   + I + V+++++                AR         RY    
Sbjct: 53  CGLSAVDDARRVARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWE 112

Query: 112 EHAKT---INATLIMTAHTFD-DQLET--VYMRSQRDYAEKGM-GLSGMCDTILYDLNLW 164
              +    + A  I T H    ++LE     +R  +  A+     L  +    L    + 
Sbjct: 113 SLLERSMMLGADYIATGHYARIEKLENGRFALRMSKTSAKDQTYALYNLTQDQLSKTLM- 171

Query: 165 ISRPFLRCRREDIRSFLLQRNI 186
              P     +++IR    + N+
Sbjct: 172 ---PVGDYEKDEIREIAKKFNL 190


>gi|309388972|gb|ADO76852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halanaerobium praevalens DSM 2228]
          Length = 360

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 70/221 (31%), Gaps = 54/221 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             +++A+SGG DS      L     +   G +       D+   E A D   +       
Sbjct: 2   KKVMIAMSGGVDSSVAAALLKEEGYEVIGGTMHIFP---DY---EEATDREDHCCSYSAV 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHA 114
                V  +L I H V + +    +  +       +  R          E ++A + + A
Sbjct: 56  RDAKRVAQKLEIPHFVFNLREEFQEKVIDYFVDEYSLGRTPNPCVMCNKEIKFAALHKKA 115

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFL 170
             I    I + H    + E       R   +KG+  +     +LY LN         P  
Sbjct: 116 IEIGCDYIASGHYAKIEKEN-----GRYILKKGLDENKDQSYMLYVLNQEQLSQTLFPLS 170

Query: 171 RCRREDIRSFLLQRNISWCEDPSNT----------DDRFER 201
              + +IR     +N+ +     N           DD + R
Sbjct: 171 EYTKSEIRE--KAKNLGFEI--HNKAESQEICFVPDDDYVR 207


>gi|194289765|ref|YP_002005672.1| gmp synthase [Cupriavidus taiwanensis LMG 19424]
 gi|226738433|sp|B3R290|GUAA_CUPTR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|193223600|emb|CAQ69607.1| GMP synthetase (glutamine aminotransferase) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 539

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 69/197 (35%), Gaps = 21/197 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L--RETAKDEVR-YVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALIS 111
           L  ++  K  +  +V  + ++  + H   S +        + P+       RE      +
Sbjct: 259 LLRQDEGKLVMEMFVGRLHAK--VVHVDASEQFLGHLAGVTDPEQKRKIIGREFVEVFQA 316

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  K  NA  +     + D +E+      +      +        +   L L +  P   
Sbjct: 317 EARKLTNAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEPLRD 373

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R   ++  +  
Sbjct: 374 LFKDEVRELGVELGLPP 390


>gi|299143875|ref|ZP_07036955.1| GMP synthase [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518360|gb|EFI42099.1| GMP synthase [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 505

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           V++ V    +L+A+SGG DS      L   +        K + I VDH L R+   DEV 
Sbjct: 204 VKNKVGDGKVLLALSGGVDSSVTAALLSKAV------GSKLTCIFVDHGLMRKNEGDEVE 257

Query: 72  YV 73
             
Sbjct: 258 AA 259


>gi|227877338|ref|ZP_03995411.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256842900|ref|ZP_05548388.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256848726|ref|ZP_05554160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
           MV-1A-US]
 gi|262045866|ref|ZP_06018830.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
 gi|293381734|ref|ZP_06627715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus 214-1]
 gi|312977582|ref|ZP_07789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus CTV-05]
 gi|227863194|gb|EEJ70640.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256614320|gb|EEU19521.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN]
 gi|256714265|gb|EEU29252.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus
           MV-1A-US]
 gi|260573825|gb|EEX30381.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US]
 gi|290921781|gb|EFD98802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus 214-1]
 gi|310895321|gb|EFQ44388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus crispatus CTV-05]
          Length = 375

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 40/221 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     S +        TA ++  
Sbjct: 5   SKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGVC-------TATEDYE 57

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
            V  V  ++ I +  ++++                  R          + ++    E A 
Sbjct: 58  DVKKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAM 117

Query: 116 TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            ++A  I   H      D    T  MR +    ++   LS +    +      +  P   
Sbjct: 118 DLDADYIAMGHYAKTVKDTNGVTHMMRPKDGNKDQTYFLSQLSQEQISK----VIFPLAN 173

Query: 172 CRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +  +R   L   ++    +D +      ER   R+F+ +
Sbjct: 174 LTKPQVREIALANGLATAKKKDSTGICFIGERNF-RKFLSE 213


>gi|89094503|ref|ZP_01167442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanospirillum sp. MED92]
 gi|89081239|gb|EAR60472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanospirillum sp. MED92]
          Length = 371

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 43/132 (32%), Gaps = 35/132 (26%)

Query: 20  AHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
           A ++V +SGG DS    LL+       +  F K             E        AK+++
Sbjct: 12  AKVIVGMSGGVDSSVSALLLMQQGYQVEGLFMK----------NWDEDDGTEYCTAKEDL 61

Query: 71  RYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHA 114
                VC +L I     +     W N          A           RE ++    E+A
Sbjct: 62  ADAQAVCDKLGIHLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYA 121

Query: 115 KTINATLIMTAH 126
             + A  I T H
Sbjct: 122 VELGADFIATGH 133


>gi|312866787|ref|ZP_07727000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis F0405]
 gi|311097570|gb|EFQ55801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus parasanguinis F0405]
          Length = 373

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 45/197 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L         +         +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  + T H    + D   E   +   R      ++   LS +    L         P  
Sbjct: 120 GADYVATGHYARVSRD---EDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMF----PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  ++
Sbjct: 173 HLEKPEVRRLAEEAGLA 189


>gi|78044956|ref|YP_359914.1| GMP synthase [Carboxydothermus hydrogenoformans Z-2901]
 gi|91206799|sp|Q3AD70|GUAA_CARHZ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77997071|gb|ABB15970.1| GMP synthase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 509

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++ A+SGG DS    + +H  + D        + I VDH  LR+   +EV 
Sbjct: 208 IKEQVGEEKVVCALSGGVDSSVAAVLVHKAIGD------NLTCIFVDHGLLRKGEAEEV- 260

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
            V     + ++    V  K            P+        E       E AK  +   +
Sbjct: 261 -VRTFKEQFQMNLVFVDAKEQFLAKLKGVRDPEQKRKIIGHEFIRVFEEEAAKLGDIRFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +    + D +E              +        +  D+   +  P     ++++R   L
Sbjct: 320 VQGTLYPDVVE------SGTATAATIKSHHNVGGLPEDMKFQLIEPLKWLFKDEVRELGL 373

Query: 183 QRNIS 187
           +  + 
Sbjct: 374 ELGLP 378


>gi|317472707|ref|ZP_07932022.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA]
 gi|316899884|gb|EFV21883.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA]
          Length = 301

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 54/218 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------------------RSFGKIKFSAISVDH 60
              ++V +SGG DS      L     +                   + G    SA+    
Sbjct: 2   KEKVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAV---- 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-RE 104
                  D+ R V      L I + V+++K    +                    A  R 
Sbjct: 58  -------DDARRV---AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRY 107

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETV---YMRSQRDYAEKGMGLSGMCDTILYDL 161
            ++  + + +  I A  I T H    ++E +       +R    +      + +     L
Sbjct: 108 VKWESLLKRSLDIGADYIATGHYA--RIEKLSNGRYALKRSATPEKDQTYALYNLTQNQL 165

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +  +  P     +++IR    + ++     P + D  F
Sbjct: 166 SKTLM-PVGEYTKDEIREIAEKIHLPVAHKPDSQDICF 202


>gi|224055025|ref|XP_002298404.1| predicted protein [Populus trichocarpa]
 gi|222845662|gb|EEE83209.1| predicted protein [Populus trichocarpa]
          Length = 434

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 68/203 (33%), Gaps = 44/203 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KD 68
            P  I V +SGG DS   L  LH+     +   +K          +E           ++
Sbjct: 6   KPLRIAVLLSGGVDSSVALRLLHAAGHHCTAFYLKIW-------FQEDFNNFWSECPWEE 58

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISE 112
           ++++   VC ++ +   VV   +   S   + ++   R  R             +    +
Sbjct: 59  DLKFAKGVCDQVGVPLEVVHLTDEYWSNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 118

Query: 113 HAKTINATLIMTAHTF------DDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
               +    + + H         DQ+   +V   S+    ++   LS +    L      
Sbjct: 119 AINNMEFDYVASGHYAHVIHPVSDQINKPSVLELSKDKLKDQTYFLSHLTQAQLKR---- 174

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     +E++R+   + ++ 
Sbjct: 175 LIFPLGCIPKEEVRNLASKFDLP 197


>gi|167745698|ref|ZP_02417825.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662]
 gi|167655010|gb|EDR99139.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662]
          Length = 356

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 54/218 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------------------RSFGKIKFSAISVDH 60
              ++V +SGG DS      L     +                   + G    SA+    
Sbjct: 2   KEKVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAV---- 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-RE 104
                  D+ R V      L I + V+++K    +                    A  R 
Sbjct: 58  -------DDARRV---AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRY 107

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETV---YMRSQRDYAEKGMGLSGMCDTILYDL 161
            ++  + + +  I A  I T H    ++E +       +R    +      + +     L
Sbjct: 108 VKWESLLKRSLDIGADYIATGHYA--RIEKLSNGRYALKRSATPEKDQTYALYNLTQNQL 165

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +  +  P     +++IR    + ++     P + D  F
Sbjct: 166 SKTLM-PVGEYTKDEIREIAEKIHLPVAHKPDSQDICF 202


>gi|50843224|ref|YP_056451.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Propionibacterium acnes KPA171202]
 gi|81611253|sp|Q6A6X1|GUAA_PROAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|50840826|gb|AAT83493.1| GMP synthase [glutamine-hydrolyzing] [Propionibacterium acnes
           KPA171202]
          Length = 530

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 224 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 277

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 278 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 336

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  D    +  P     ++++R+ 
Sbjct: 337 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDFQFSLVEPLRTLFKDEVRAV 391

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 392 GLELGLP--ED 400


>gi|329570895|gb|EGG52605.1| GMP synthase domain protein [Enterococcus faecalis TX1467]
          Length = 523

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 216 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 267 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +   +      I W 
Sbjct: 381 ALGTELGMPDAIVWR 395


>gi|257421462|ref|ZP_05598452.1| bifunctional GMP synthase/glutamine amidotransferase [Enterococcus
           faecalis X98]
 gi|257163286|gb|EEU93246.1| bifunctional GMP synthase/glutamine amidotransferase [Enterococcus
           faecalis X98]
          Length = 455

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 151 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 201

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 202 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 261

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 262 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 315

Query: 179 SFLLQRN----ISWC 189
           +   +      I W 
Sbjct: 316 ALGTELGMPDAIVWR 330


>gi|256960703|ref|ZP_05564874.1| GMP synthase [Enterococcus faecalis Merz96]
 gi|293384761|ref|ZP_06630613.1| GMP synthase [Enterococcus faecalis R712]
 gi|293388022|ref|ZP_06632552.1| GMP synthase [Enterococcus faecalis S613]
 gi|312908689|ref|ZP_07767630.1| GMP synthase protein [Enterococcus faecalis DAPTO 512]
 gi|312909163|ref|ZP_07768021.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis DAPTO 516]
 gi|256951199|gb|EEU67831.1| GMP synthase [Enterococcus faecalis Merz96]
 gi|291077938|gb|EFE15302.1| GMP synthase [Enterococcus faecalis R712]
 gi|291082580|gb|EFE19543.1| GMP synthase [Enterococcus faecalis S613]
 gi|310625370|gb|EFQ08653.1| GMP synthase protein [Enterococcus faecalis DAPTO 512]
 gi|311290505|gb|EFQ69061.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis DAPTO 516]
          Length = 520

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 216 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 267 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +   +      I W 
Sbjct: 381 ALGTELGMPDAIVWR 395


>gi|302553630|ref|ZP_07305972.1| GMP synthase domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471248|gb|EFL34341.1| GMP synthase domain-containing protein [Streptomyces
           viridochromogenes DSM 40736]
          Length = 526

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     +R  V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 209 SVIEEQVAAIREQVGDRRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 262

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   +  +          R+          +   A 
Sbjct: 263 RKGETEQVEKDFVAATGVQLKVVDAEERFLKALAGVSDPEEKRKIIGREFIRVFEQAQAE 322

Query: 121 LIMTAHTFDDQ---LE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPF 169
           +I       DQ   +E     T+Y          G            +  DL   +  P 
Sbjct: 323 IIA------DQGPAVEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFKLIEPL 376

Query: 170 LRCRREDIRSFLLQRNIS 187
            +  ++++R    +  + 
Sbjct: 377 RKLFKDEVRMVGQELGLP 394


>gi|256855130|ref|ZP_05560491.1| bifunctional GMP synthase/glutamine amidotransferase [Enterococcus
           faecalis T8]
 gi|256709643|gb|EEU24690.1| bifunctional GMP synthase/glutamine amidotransferase [Enterococcus
           faecalis T8]
 gi|315028785|gb|EFT40717.1| GMP synthase protein [Enterococcus faecalis TX4000]
          Length = 520

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 216 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 267 QVMESLGGKFGLNIIKVDAKERFLSKLVGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +   +      I W 
Sbjct: 381 ALGTELGMPDAIVWR 395


>gi|300861889|ref|ZP_07107969.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis TUSoD Ef11]
 gi|300848414|gb|EFK76171.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis TUSoD Ef11]
          Length = 520

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 216 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 267 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +   +      I W 
Sbjct: 381 ALGTELGMPDAIVWR 395


>gi|229496306|ref|ZP_04390026.1| GMP synthase [Porphyromonas endodontalis ATCC 35406]
 gi|229316884|gb|EEN82797.1| GMP synthase [Porphyromonas endodontalis ATCC 35406]
          Length = 506

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  +    +L+A+SGG DS  + + L+  +          + I VDH  LR 
Sbjct: 199 IERTVAELREQLQNDKVLLALSGGVDSSVVAVLLNKAIGR------NLTCIFVDHGLLR- 251

Query: 65  TAKDEVRYV-SDV-CSRLRI 82
             KDE   V  D  C  L +
Sbjct: 252 --KDEATQVMQDYRCLGLNV 269


>gi|229550585|ref|ZP_04439310.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis ATCC 29200]
 gi|229304304|gb|EEN70300.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis ATCC 29200]
          Length = 520

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 216 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 267 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +   +      I W 
Sbjct: 381 ALGTELGMPDAIVWR 395


>gi|89890355|ref|ZP_01201865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium BBFL7]
 gi|89517270|gb|EAS19927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium BBFL7]
          Length = 392

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 34/194 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHC-LRETAKDEVRYVS 74
           A ++V +SGG DS      L     +             +++ D C   E + D    V+
Sbjct: 2   AKVVVGLSGGVDSSVAAYLLKEQGHEVIGLFMKNWHDDTVTISDECPWLEDSND-AMLVA 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGL-----MAAA-----------REARYALISEHAKTIN 118
           D   +L I    V       +  +       A            RE ++ +  + A  + 
Sbjct: 61  D---KLGIPFQTVDLSEQYKERIVDYMFDEYARGRTPNPDVLCNREIKFDVFMDIALELG 117

Query: 119 ATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           A  + T H      T  D  E                   +C      L   I  P    
Sbjct: 118 ADYVATGHYCQKTTTMIDGKE--IHHLIGGADLNKDQSYFLCQVSQEQLARTIF-PIGHL 174

Query: 173 RREDIRSFLLQRNI 186
           ++ ++R     +++
Sbjct: 175 QKPEVREIAASQDL 188


>gi|29374817|ref|NP_813969.1| GMP synthase [Enterococcus faecalis V583]
 gi|227519958|ref|ZP_03950007.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis TX0104]
 gi|227555820|ref|ZP_03985867.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis HH22]
 gi|229547002|ref|ZP_04435727.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis TX1322]
 gi|255971671|ref|ZP_05422257.1| GMP synthase [Enterococcus faecalis T1]
 gi|255974676|ref|ZP_05425262.1| GMP synthase [Enterococcus faecalis T2]
 gi|256618415|ref|ZP_05475261.1| GMP synthase [Enterococcus faecalis ATCC 4200]
 gi|256761969|ref|ZP_05502549.1| GMP synthase [Enterococcus faecalis T3]
 gi|256956895|ref|ZP_05561066.1| GMP synthase [Enterococcus faecalis DS5]
 gi|256964099|ref|ZP_05568270.1| GMP synthase [Enterococcus faecalis HIP11704]
 gi|257078566|ref|ZP_05572927.1| GMP synthase [Enterococcus faecalis JH1]
 gi|257081462|ref|ZP_05575823.1| GMP synthase [Enterococcus faecalis E1Sol]
 gi|257084112|ref|ZP_05578473.1| GMP synthase [Enterococcus faecalis Fly1]
 gi|257087939|ref|ZP_05582300.1| GMP synthase [Enterococcus faecalis D6]
 gi|257088617|ref|ZP_05582978.1| GMP synthase [Enterococcus faecalis CH188]
 gi|257417542|ref|ZP_05594536.1| GMP synthase [Enterococcus faecalis AR01/DG]
 gi|257418732|ref|ZP_05595726.1| GMP synthase [Enterococcus faecalis T11]
 gi|294781523|ref|ZP_06746861.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis PC1.1]
 gi|307269051|ref|ZP_07550413.1| GMP synthase protein [Enterococcus faecalis TX4248]
 gi|307274136|ref|ZP_07555344.1| GMP synthase protein [Enterococcus faecalis TX0855]
 gi|307276360|ref|ZP_07557485.1| GMP synthase protein [Enterococcus faecalis TX2134]
 gi|307278570|ref|ZP_07559641.1| GMP synthase protein [Enterococcus faecalis TX0860]
 gi|307287053|ref|ZP_07567126.1| GMP synthase protein [Enterococcus faecalis TX0109]
 gi|312901158|ref|ZP_07760445.1| GMP synthase protein [Enterococcus faecalis TX0470]
 gi|312903895|ref|ZP_07763066.1| GMP synthase protein [Enterococcus faecalis TX0635]
 gi|312952567|ref|ZP_07771432.1| GMP synthase protein [Enterococcus faecalis TX0102]
 gi|44887950|sp|Q839J8|GUAA_ENTFA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29342275|gb|AAO80041.1| GMP synthase [Enterococcus faecalis V583]
 gi|227072506|gb|EEI10469.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis TX0104]
 gi|227174987|gb|EEI55959.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis HH22]
 gi|229307930|gb|EEN73917.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Enterococcus faecalis TX1322]
 gi|237512927|gb|AAL27449.2| GuaA [Enterococcus faecalis]
 gi|255962689|gb|EET95165.1| GMP synthase [Enterococcus faecalis T1]
 gi|255967548|gb|EET98170.1| GMP synthase [Enterococcus faecalis T2]
 gi|256597942|gb|EEU17118.1| GMP synthase [Enterococcus faecalis ATCC 4200]
 gi|256683220|gb|EEU22915.1| GMP synthase [Enterococcus faecalis T3]
 gi|256947391|gb|EEU64023.1| GMP synthase [Enterococcus faecalis DS5]
 gi|256954595|gb|EEU71227.1| GMP synthase [Enterococcus faecalis HIP11704]
 gi|256986596|gb|EEU73898.1| GMP synthase [Enterococcus faecalis JH1]
 gi|256989492|gb|EEU76794.1| GMP synthase [Enterococcus faecalis E1Sol]
 gi|256992142|gb|EEU79444.1| GMP synthase [Enterococcus faecalis Fly1]
 gi|256995969|gb|EEU83271.1| GMP synthase [Enterococcus faecalis D6]
 gi|256997429|gb|EEU83949.1| GMP synthase [Enterococcus faecalis CH188]
 gi|257159370|gb|EEU89330.1| GMP synthase [Enterococcus faecalis ARO1/DG]
 gi|257160560|gb|EEU90520.1| GMP synthase [Enterococcus faecalis T11]
 gi|294451380|gb|EFG19844.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecalis PC1.1]
 gi|306501832|gb|EFM71122.1| GMP synthase protein [Enterococcus faecalis TX0109]
 gi|306504736|gb|EFM73935.1| GMP synthase protein [Enterococcus faecalis TX0860]
 gi|306506965|gb|EFM76110.1| GMP synthase protein [Enterococcus faecalis TX2134]
 gi|306509098|gb|EFM78160.1| GMP synthase protein [Enterococcus faecalis TX0855]
 gi|306514621|gb|EFM83174.1| GMP synthase protein [Enterococcus faecalis TX4248]
 gi|310629468|gb|EFQ12751.1| GMP synthase protein [Enterococcus faecalis TX0102]
 gi|310632729|gb|EFQ16012.1| GMP synthase protein [Enterococcus faecalis TX0635]
 gi|311291747|gb|EFQ70303.1| GMP synthase protein [Enterococcus faecalis TX0470]
 gi|315026770|gb|EFT38702.1| GMP synthase protein [Enterococcus faecalis TX2137]
 gi|315031190|gb|EFT43122.1| GMP synthase protein [Enterococcus faecalis TX0017]
 gi|315035975|gb|EFT47907.1| GMP synthase protein [Enterococcus faecalis TX0027]
 gi|315143272|gb|EFT87288.1| GMP synthase protein [Enterococcus faecalis TX2141]
 gi|315147095|gb|EFT91111.1| GMP synthase protein [Enterococcus faecalis TX4244]
 gi|315151188|gb|EFT95204.1| GMP synthase protein [Enterococcus faecalis TX0012]
 gi|315153422|gb|EFT97438.1| GMP synthase protein [Enterococcus faecalis TX0031]
 gi|315156291|gb|EFU00308.1| GMP synthase protein [Enterococcus faecalis TX0043]
 gi|315158571|gb|EFU02588.1| GMP synthase protein [Enterococcus faecalis TX0312]
 gi|315160860|gb|EFU04877.1| GMP synthase protein [Enterococcus faecalis TX0645]
 gi|315165827|gb|EFU09844.1| GMP synthase protein [Enterococcus faecalis TX1302]
 gi|315168180|gb|EFU12197.1| GMP synthase protein [Enterococcus faecalis TX1341]
 gi|315172592|gb|EFU16609.1| GMP synthase protein [Enterococcus faecalis TX1346]
 gi|315573619|gb|EFU85810.1| GMP synthase protein [Enterococcus faecalis TX0309B]
 gi|315579392|gb|EFU91583.1| GMP synthase protein [Enterococcus faecalis TX0630]
 gi|315582033|gb|EFU94224.1| GMP synthase protein [Enterococcus faecalis TX0309A]
 gi|323479384|gb|ADX78823.1| Glutamineamidotransferase [Enterococcus faecalis 62]
 gi|327533968|gb|AEA92802.1| GMP synthase (glutamine-hydrolyzing) [Enterococcus faecalis OG1RF]
          Length = 520

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 216 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 267 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +   +      I W 
Sbjct: 381 ALGTELGMPDAIVWR 395


>gi|254509508|ref|ZP_05121575.1| GMP synthase [Rhodobacteraceae bacterium KLH11]
 gi|221533219|gb|EEE36207.1| GMP synthase [Rhodobacteraceae bacterium KLH11]
          Length = 519

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    I +H  + D      + + + VDH  LR+    EV 
Sbjct: 215 IREQVGDKKVICGLSGGVDSSVAAILIHEAIGD------QLTCVFVDHGLLRKNEATEV- 267

Query: 72  YVSDVCSRLRIAH----SVVSWKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
            V        I          +             R+    L  +  +        A  +
Sbjct: 268 -VGMFRDNYNIRLIHADESELFLGELDGQSDPETKRKIIGKLFIDVFQKHADTIEGAEFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 327 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLIEPLRELFKDEVRALGR 383

Query: 183 QRNIS 187
           +  + 
Sbjct: 384 ELGLP 388


>gi|312961679|ref|ZP_07776177.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6]
 gi|311283938|gb|EFQ62521.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6]
          Length = 374

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 38/196 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
               ++V +SGG DS    + L     +     +K           E        A D++
Sbjct: 10  QKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMK--------NWEEDDGTEYCTAMDDL 61

Query: 71  RYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHA 114
                VC ++ I     +     W N          A           RE ++    ++A
Sbjct: 62  ADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYA 121

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             + A LI T H     D    T  ++      ++   L  +    +         P   
Sbjct: 122 MMLGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKT----LFPVGE 177

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    Q  ++
Sbjct: 178 LEKPEVRRIAEQHGLA 193


>gi|260597502|ref|YP_003210073.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter turicensis z3032]
 gi|260216679|emb|CBA30030.1| tRNA-specific 2-thiouridylase mnmA [Cronobacter turicensis z3032]
          Length = 369

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 39/194 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A  ++  
Sbjct: 7   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMK--------NWEEDDGEDYCTAASDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHAK 115
              VC +L I    V++              E +                  A +   A+
Sbjct: 59  AQAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAE 118

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A  I T H     D   ++  +R      ++   L     T+ +D       P    
Sbjct: 119 DLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLY----TLGHDQVAQSLFPVGEL 174

Query: 173 RREDIRSFLLQRNI 186
            + ++R    + ++
Sbjct: 175 EKPEVRRIAEELDL 188


>gi|166154498|ref|YP_001654616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis 434/Bu]
 gi|166155373|ref|YP_001653628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335758|ref|ZP_07224002.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis L2tet1]
 gi|205813555|sp|B0B7K3|MNMA_CHLT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205813565|sp|B0BBR8|MNMA_CHLTB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|165930486|emb|CAP03979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis 434/Bu]
 gi|165931361|emb|CAP06933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 358

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 60/204 (29%), Gaps = 63/204 (30%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RET-----AKDE 69
           ++VA+SGG DS  +   L      +  G+           L       ++      A  +
Sbjct: 5   VIVAMSGGVDSSVVAYLL------KKQGEYNVV------GLFMKNWGEQDENGECTATKD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEH 113
            R V  +  +L I +  VS+     +      L   A            RE ++ L+ + 
Sbjct: 53  FRDVERIAEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKK 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYDLNL 163
              +    + T H              R     G GLS   D              D   
Sbjct: 113 VLELKGDFLATGH------------YCRG-GADGTGLSRGIDPNKDQSYFLCGTPKDALS 159

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + ++R    +  ++
Sbjct: 160 NVLFPLGGMYKTEVRRIAQEAGLA 183


>gi|163758747|ref|ZP_02165834.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hoeflea phototrophica DFL-43]
 gi|162284037|gb|EDQ34321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hoeflea phototrophica DFL-43]
          Length = 401

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 26/132 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R     A  ++
Sbjct: 15  PRDTRVVVAMSGGVDSSVVAGLLAREGYDVLGVTLQLY----DHGAAVHRAGACCAGQDI 70

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                VC  L I H V+ ++    +  +   A                   ++A +   A
Sbjct: 71  DDARRVCEVLGIPHYVLDYEKRFQEAVINPFAESYVAGETPIPCVACNQTVKFADLLATA 130

Query: 115 KTINATLIMTAH 126
           + + A  + T H
Sbjct: 131 RDLGADALATGH 142


>gi|219667442|ref|YP_002457877.1| ExsB family protein [Desulfitobacterium hafniense DCB-2]
 gi|219537702|gb|ACL19441.1| ExsB family protein [Desulfitobacterium hafniense DCB-2]
          Length = 267

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 49/186 (26%), Gaps = 47/186 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETA-KDEVRYVSD 75
           ++VA SGG DS  LL   H  L               DHCL      ET    +      
Sbjct: 18  VVVAFSGGVDSTFLLKVAHETLG--------------DHCLAVIGASETMPSADYNNALQ 63

Query: 76  VCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                     V+  +    +             +   +  +   A+      ++     D
Sbjct: 64  QAKEFGAKFLVIETEEMGKEEFVKNPQNRCFHCKNELFTKLLGIAQEKKINWVLDGSNAD 123

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
           D                   L      +     L I  P       +E+IR    +  +S
Sbjct: 124 D-------------------LKDYRPGMQAARALGIRSPLQEAGLSKEEIRQLSKKMGLS 164

Query: 188 WCEDPS 193
             + PS
Sbjct: 165 TWDKPS 170


>gi|311067107|ref|YP_003972030.1| GMP synthase [Bacillus atrophaeus 1942]
 gi|310867624|gb|ADP31099.1| GMP synthase [Bacillus atrophaeus 1942]
          Length = 513

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   ++L A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 212 IRETVGDKNVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLLRKG---EAE 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V  K+         S P+        E  Y    E  K      
Sbjct: 263 GVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDEADKLKGIDY 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRALG 376

Query: 182 LQRNIS 187
            +  I 
Sbjct: 377 SELGIP 382


>gi|302387623|ref|YP_003823445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium saccharolyticum WM1]
 gi|302198251|gb|ADL05822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium saccharolyticum WM1]
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 67/214 (31%), Gaps = 48/214 (22%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET- 65
           E  R  VR  +  A ++V +SGG DS      L     D     ++          ++  
Sbjct: 4   EQGRKVVRETMSKAKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQI--------WQDED 55

Query: 66  --------------AKDEVRYVSDVCSRLRIAHSVVSWK---------------NSKPQT 96
                         A D+ R V+     L I + V+++K                     
Sbjct: 56  TGTQEENGGCCGLSAVDDARRVAW---DLGIPYYVMNFKEEFKSQVIDYFVGEYQKGRTP 112

Query: 97  GLMAAA-REARYALISEHAKTINATLIMTAHTFDDQLETV---YMRSQRDYAEKGMGLSG 152
               A  R  ++  + + +  I A  I T H    Q+E +       ++           
Sbjct: 113 NPCIACNRYVKWESLLKRSLDIGADYIATGHYA--QIEKLPNGRYALKKSVTAAKDQTYA 170

Query: 153 MCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           + +   + L+  +  P     ++ IR    + N+
Sbjct: 171 LYNLTQHQLSHTLM-PVGAYSKDQIREIADRINL 203


>gi|71274784|ref|ZP_00651072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Dixon]
 gi|71901076|ref|ZP_00683185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
 gi|170729970|ref|YP_001775403.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M12]
 gi|205828985|sp|B0U6Q7|MNMA_XYLFM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71164516|gb|EAO14230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Dixon]
 gi|71729158|gb|EAO31280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
 gi|167964763|gb|ACA11773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa M12]
          Length = 379

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+VA+SGG DS      L+S         +     + D   +  A+++ R    VC  L
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQREA--IAGLFMRNWTDDGNGQCHAEEDRRDAVAVCGIL 62

Query: 81  RIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEHAKTINATLIMT 124
            IA     + +   Q      L   A            RE ++    E A+ + A  I T
Sbjct: 63  GIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRIAT 122

Query: 125 AHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            H    ++E        +R      ++   L  +    L         P     ++ +R 
Sbjct: 123 GHYA--RIEHYRQRWHLLRGADRSKDQSYFLHQLGQEQLAAT----LFPIGDLEKQQLRQ 176

Query: 180 FLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
              Q  +     +D +      ER   R F++   L A   +++  Q+ R+ 
Sbjct: 177 LAHQTGLPTHAKKDSTGICFIGERNF-REFLKQY-LPAQPGEIRDPQEQRIA 226


>gi|284043336|ref|YP_003393676.1| GMP synthase, large subunit [Conexibacter woesei DSM 14684]
 gi|283947557|gb|ADB50301.1| GMP synthase, large subunit [Conexibacter woesei DSM 14684]
          Length = 533

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + + VDH L R+   ++V 
Sbjct: 228 IREQVGGGRVICALSGGVDSSVAALLVHRAIGD------QLTCVFVDHGLMRKNEGEQV- 280

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK--TINAT 120
            ++      ++    V  +          ++P+    A   E       E AK     A 
Sbjct: 281 -ITAFRDHYKVPLVAVDAEERFLNRLRGVTEPEQKRKAIGDEFIRVFEEESAKLAEGGAR 339

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 340 FLVQGTLYSDVIES-----GGGTGAATIKSHHNVGGLPDDLQFELVEPLRALFKDEVRAV 394

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 395 GAELGLP 401


>gi|153853932|ref|ZP_01995265.1| hypothetical protein DORLON_01256 [Dorea longicatena DSM 13814]
 gi|149753314|gb|EDM63245.1| hypothetical protein DORLON_01256 [Dorea longicatena DSM 13814]
          Length = 471

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 166 IREKVGDGRVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKDEGDEVE 219

Query: 72  YV 73
            V
Sbjct: 220 GV 221


>gi|126731353|ref|ZP_01747160.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sagittula stellata E-37]
 gi|126708264|gb|EBA07323.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sagittula stellata E-37]
          Length = 523

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS    I LH  + D      + + + VDH  LR     E  
Sbjct: 219 IREQVGDKQVICALSGGVDSSVTGILLHEAIGD------QLTCVFVDHGLLRLN---EAE 269

Query: 72  YVSDVCS---RLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
            V  +      L + H+  S  +  +          R+    L  +  +        A  
Sbjct: 270 QVVQMFRDNYNLNLIHADESDLFLGALEGVSDPEIKRKTIGKLFIDVFQKYADQIEGAEF 329

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 330 LAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALG 386

Query: 182 LQRNIS 187
            +  + 
Sbjct: 387 HELGLP 392


>gi|117617943|ref|YP_855954.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166234841|sp|A0KI53|MNMA_AERHH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117559350|gb|ABK36298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 368

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A  ++   
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDTDEYCSAAQDLADA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC +L +    +++                +  R               A +   A+ 
Sbjct: 60  KAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEE 119

Query: 117 INATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           + AT I T H    DD   T   R  R           +       +   +  P     +
Sbjct: 120 LGATYIATGHYVRRDDS--TGRPRLLRGLDTNKDQSYFLYTLSEAQVGQSLF-PVGDLEK 176

Query: 175 EDIRSFLLQRNI 186
            ++R    Q ++
Sbjct: 177 PEVRRIAEQLDL 188


>gi|296132308|ref|YP_003639555.1| GMP synthase, large subunit [Thermincola sp. JR]
 gi|296030886|gb|ADG81654.1| GMP synthase, large subunit [Thermincola potens JR]
          Length = 513

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 60/198 (30%), Gaps = 32/198 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     ++  V    +L A+SGG DS      +H  + D      + + + VDH  L
Sbjct: 203 SFVEQAVREIKEKVGDKKVLCALSGGVDSSVAAALVHKAVGD------QLTCVFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   KDE R V      +  I    V             + P+        E       E
Sbjct: 257 R---KDEARQVIQTFRDQFHINLVAVDASARFLNKLKGVTDPEQKRKIIGNEFIRVFEEE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPF 169
             K      ++    + D +E                +         +  D+   +  P 
Sbjct: 314 ARKLGEIDFLVQGTLYPDVVE---------SGTDTAAVIKSHHNVGGLPEDMKFDLVEPL 364

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    Q  + 
Sbjct: 365 RWLFKDEVRQVGEQLGLP 382


>gi|255972478|ref|ZP_05423064.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256762813|ref|ZP_05503393.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|255963496|gb|EET95972.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256684064|gb|EEU23759.1| conserved hypothetical protein [Enterococcus faecalis T3]
          Length = 275

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 84/279 (30%), Gaps = 72/279 (25%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            VR L     + VA SGG DS  LL  AL ++ ++         A+ V+  L   + DE 
Sbjct: 8   LVRELQKMDKLAVAYSGGIDSSYLLKKALDTLGAE------NVLAVVVNSEL--FSDDEF 59

Query: 71  RYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               D+ + L            +      + P +   +   +  Y  I    +     ++
Sbjct: 60  DKAVDLANGLGANVLGLEMSELADDRIVANNPNSWFYSK--KLLYKTIRSAIQKEGFDVL 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSF 180
                 DD   T +    R   ++G                 +  P    +  + +IR  
Sbjct: 118 ADGMIMDDN--TDFRPGLRARDQEG-----------------VISPLQQAKLYKIEIRQL 158

Query: 181 LLQRNISWC----------------------EDPSNTDDRFER------VRVR--RFVRD 210
                IS                         D     +++ R      VRVR    +  
Sbjct: 159 AKDAGISNWSKVASCSIASRIPYGIKLTRSAIDQVFASEKYLREIGFPIVRVRAHHDLAR 218

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           I++     K+    + R K+ + +      Y+T  +   
Sbjct: 219 IEIPE--DKLSLLLENREKIADYLKKQGFNYVTFDLEGF 255


>gi|163747172|ref|ZP_02154528.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanibulbus indolifex HEL-45]
 gi|161379733|gb|EDQ04146.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanibulbus indolifex HEL-45]
          Length = 520

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 21/188 (11%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE 69
             +R  V    ++  +SGG DS    + +H  + D      + + + VDH  LR+   +E
Sbjct: 214 AAIREQVGDQKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRKGEAEE 267

Query: 70  VRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALISEHAKTI-----NAT 120
           V  V+       +       +                R+    L  +  +       +AT
Sbjct: 268 V--VTMFRDHYNMPLIHADEQELFLGELDGVSDPETKRKIIGKLFIDVFQKHAKDVGDAT 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   + L +  P     ++++R  
Sbjct: 326 FLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVREL 382

Query: 181 LLQRNISW 188
             +  +  
Sbjct: 383 GRELGLPP 390


>gi|153955119|ref|YP_001395884.1| hypothetical protein CKL_2501 [Clostridium kluyveri DSM 555]
 gi|219855555|ref|YP_002472677.1| hypothetical protein CKR_2212 [Clostridium kluyveri NBRC 12016]
 gi|146347977|gb|EDK34513.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219569279|dbj|BAH07263.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 274

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 63/205 (30%), Gaps = 45/205 (21%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L   E  +    ++       VA SGG DS  L+   H VL D      K  A++   
Sbjct: 1   MLLQ--EKFKLLKGNIKKRGSAAVAFSGGVDSTFLVRVAHEVLGD------KLIAVT--- 49

Query: 61  CLRETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALI 110
               T+    + E++        + + H ++S +    +             ++  +  I
Sbjct: 50  ---ATSSTYPERELKEAIKYAKDMSVKHLIISSEELDIEGFASNPKNRCYYCKKELFTKI 106

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF- 169
            + A+  +   +     FDD                G    GM         L +  P  
Sbjct: 107 KKVAEENDVEYVFDGSNFDD---------------TGDYRPGMQA----AKELEVISPLK 147

Query: 170 -LRCRREDIRSFLLQRNISWCEDPS 193
                + DIR    +  +     PS
Sbjct: 148 EANLTKADIRELSKELGLPTWNKPS 172


>gi|260435745|ref|ZP_05789715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 8109]
 gi|260413619|gb|EEX06915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 8109]
          Length = 383

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 50/199 (25%), Gaps = 37/199 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDE 69
           +R       + V +SGG DS      L           +             L + A   
Sbjct: 18  LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMSGKGACCAEGLVDAAG-- 75

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-----------------ISE 112
                 +C +L I H VV  + +  Q  +       R  +                 +  
Sbjct: 76  ------ICEQLGIPHHVVDTRETFQQEIVQRLVDGYRDGITPLPCSQCNRSVKFGPMLDW 129

Query: 113 HAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             K      I T H        DQ     +R      ++   L  +   +L      I  
Sbjct: 130 ALKERKLLRIATGHYARIRHDGDQGRHQLLRGLDTRKDQSYFLYDLPQEVL----GRIVF 185

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + D R       +
Sbjct: 186 PLGELTKPDTRLEAALHGL 204


>gi|46579456|ref|YP_010264.1| GMP synthase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602993|ref|YP_967393.1| GMP synthase [Desulfovibrio vulgaris DP4]
 gi|50400347|sp|Q72D86|GUAA_DESVH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738438|sp|A1VEV0|GUAA_DESVV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46448870|gb|AAS95523.1| GMP synthase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563222|gb|ABM28966.1| GMP synthase (glutamine-hydrolyzing) [Desulfovibrio vulgaris DP4]
 gi|311233272|gb|ADP86126.1| GMP synthase, large subunit [Desulfovibrio vulgaris RCH1]
          Length = 515

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 36/201 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61
           S +E     +  +V   H++ A+SGG DS  + + LH  +        +   I VD+   
Sbjct: 203 SFVERAVKEMAEVVGDRHVVCALSGGIDSTVVAVLLHKAIGK------QLHCIFVDNGVL 256

Query: 62  -----------LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110
                      LRE     ++YV      L   H V   +  +   G         Y  I
Sbjct: 257 RLNEGQEVVDYLREHFDLNLKYVQAQERFLSKLHGVDDPEQKRKIIG---------YTFI 307

Query: 111 SEHAKTINA----TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
               +   A      +     + D +E+V  +      +    + G+ +     +NL + 
Sbjct: 308 EVFDEEAKALGHVDFLAQGTLYPDVIESVSHKGPSAVIKSHHNVGGLPEK----MNLKLI 363

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     ++++R    +  + 
Sbjct: 364 EPLRELFKDEVRKVAAELGLP 384


>gi|256831890|ref|YP_003160617.1| GMP synthase, large subunit [Jonesia denitrificans DSM 20603]
 gi|256685421|gb|ACV08314.1| GMP synthase, large subunit [Jonesia denitrificans DSM 20603]
          Length = 534

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 37/205 (18%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + + +    +R  V    ++  +SGG DS      +   + D      + + + VDH  L
Sbjct: 214 NVVAAQMELIREQVGSDQVICGLSGGVDSSVAAALVQRAIGD------QLTCVFVDHGLL 267

Query: 63  RETAKD--EVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALIS 111
           RE   +  EV +V        +   V+  +            P+T      RE       
Sbjct: 268 REGEAEQVEVDFVQST----GVHLKVIDAREQFLNALAGVTDPETKRKIIGREF-IRAFE 322

Query: 112 EHAKTINAT---------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
             A+ I A           ++    + D +E+             +        +  DL 
Sbjct: 323 GAAREIVADAGDKDGDVKWLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQ 377

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P     ++++R+  ++  + 
Sbjct: 378 FQLIEPLRTLFKDEVRAVGVELGVP 402


>gi|262306015|gb|ACY45600.1| gln amidotransferase [Armadillidium vulgare]
          Length = 197

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+   ++R  V    +L+ VSGG DS      L   L++      +  A+ +D+  LR  
Sbjct: 31  ENCIKYIRETVSSNKVLMLVSGGVDSTVCAALLRKALTED-----QVIAVHIDNGFLR-- 83

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
            K EV+ V +   +L +   VVS
Sbjct: 84  -KKEVQQVEESLQKLGLKLKVVS 105


>gi|257387449|ref|YP_003177222.1| GMP synthase subunit B [Halomicrobium mukohataei DSM 12286]
 gi|257169756|gb|ACV47515.1| GMP synthase, large subunit [Halomicrobium mukohataei DSM 12286]
          Length = 305

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 62/170 (36%), Gaps = 20/170 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLR 81
           ++A+SGG DS       +  + D      + + + VD  L R+   DE+R   D    LR
Sbjct: 25  VIALSGGVDSSTAAALAYEAIGD------QLTPVYVDTGLMRKGETDEIRETFDYMDSLR 78

Query: 82  IAHSVVSW-KNSKPQTGLMAAAREARYAL---ISEHAKTINATLIMTAHTFDDQLETVYM 137
           I  +   +    + +T                    AK ++A  ++    + D++E    
Sbjct: 79  IVDATDRFLDALEGETDPEEKRHIIGEQFIREFETVAKDVDADYLVQGTIYPDRIE---- 134

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                  +    + G+ + + ++    I  P     ++++R      ++ 
Sbjct: 135 --SEGTIKSHHNVGGLPEVVDFEG---IVEPMRDLYKDEVREVARALDLE 179


>gi|150391390|ref|YP_001321439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus metalliredigens QYMF]
 gi|205811141|sp|A6TUB2|MNMA_ALKMQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149951252|gb|ABR49780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alkaliphilus metalliredigens QYMF]
          Length = 369

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 67/201 (33%), Gaps = 40/201 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETA 66
           ++       +++ +SGG DS    + L     D      +++ +        ++    TA
Sbjct: 1   MKKDPKDTKVVIGMSGGVDSSVAALKLKEQGYDVIGIFMKNWDEPD------EYGY-CTA 53

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALI 110
            ++   V  VC ++ I +  V+++    +             R          E ++   
Sbjct: 54  AEDYEDVRRVCEQIGIPYYTVNFEKEYWEKVFQYFLDEYKKGRTPNPDVMCNKEIKFKAF 113

Query: 111 SEHAKTINATLIMTAHTFDDQL-----ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            EHA  + A  + T H    Q+     E   +R      ++   L+ +    L       
Sbjct: 114 LEHALKLGADYLATGHYA--QVDYKDGEYRLLRGVDSNKDQTYFLNTLGQYQLSKAMF-- 169

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P     ++ +R   L  ++
Sbjct: 170 --PIGHIDKKKVREMALAHDL 188


>gi|312900465|ref|ZP_07759770.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX0470]
 gi|311292416|gb|EFQ70972.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX0470]
          Length = 278

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 84/279 (30%), Gaps = 72/279 (25%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            VR L     + VA SGG DS  LL  AL ++ ++         A+ V+  L   + DE 
Sbjct: 11  LVRELQKMDKLAVAYSGGIDSSYLLKKALDTLGAE------NVLAVVVNSEL--FSDDEF 62

Query: 71  RYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               D+ + L            +      + P +   +   +  Y  I    +     ++
Sbjct: 63  DKAVDLANGLGANVLSLEMSELADDRIVANNPNSWFYSK--KLLYKTIRSAIQKEGFDVL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSF 180
                 DD   T +    R   ++G                 +  P    +  + +IR  
Sbjct: 121 ADGMIMDDN--TDFRPGLRARDQEG-----------------VISPLQQAKLYKIEIRQL 161

Query: 181 LLQRNISWC----------------------EDPSNTDDRFER------VRVR--RFVRD 210
                IS                         D     +++ R      VRVR    +  
Sbjct: 162 AKDAGISNWSKVASCSIASRIPYGIKLTRSAIDQVFASEKYLREIGFPIVRVRAHHDLAR 221

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           I++     K+    + R K+ + +      Y+T  +   
Sbjct: 222 IEIPE--DKLSLLLENRGKIADYLKKQGFNYVTFDLEGF 258


>gi|281413095|ref|YP_003347174.1| NAD synthase [Thermotoga naphthophila RKU-10]
 gi|281374198|gb|ADA67760.1| NAD synthase [Thermotoga naphthophila RKU-10]
          Length = 303

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 50/182 (27%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDV 76
               + VA SGG DS      L ++L+  + G+ +   ++VD        +     V + 
Sbjct: 2   KDGKLYVAFSGGKDSS-----LVAILAKMALGEERVELVTVD--WSPYTYERSREIVRNF 54

Query: 77  CSRLRIAHSVVS-----WKNSKPQTGLMAAAREA------RYALISEHAKTINATLIMTA 125
             +  + H+ +       K  +      A  R+       RYA            L+ + 
Sbjct: 55  AEKHGLKHTFIPSNRMQEKVWRHGPSCNACTRDVKTVLVKRYA---------QGHLVASG 105

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
               D                     G     ++D    +  P  R  +E+I   L    
Sbjct: 106 ANASD-------------------SWGKTGLKVFDG---VYSPLCRVGKEEINEMLKFLG 143

Query: 186 IS 187
           + 
Sbjct: 144 LE 145


>gi|315147528|gb|EFT91544.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX4244]
 gi|327535393|gb|AEA94227.1| PP-loop family protein [Enterococcus faecalis OG1RF]
          Length = 278

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 84/279 (30%), Gaps = 72/279 (25%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            VR L     + VA SGG DS  LL  AL ++ ++         A+ V+  L   + DE 
Sbjct: 11  LVRELQKMDKLAVAYSGGIDSSYLLKKALDTLGAE------NVLAVVVNSEL--FSDDEF 62

Query: 71  RYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               D+ + L            +      + P +   +   +  Y  I    +     ++
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIVANNPNSWFYSK--KLLYKTIRSAIQKEGFDVL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSF 180
                 DD   T +    R   ++G                 +  P    +  + +IR  
Sbjct: 121 ADGMIMDDN--TDFRPGLRARDQEG-----------------VISPLQQAKLYKIEIRQL 161

Query: 181 LLQRNISWC----------------------EDPSNTDDRFER------VRVR--RFVRD 210
                IS                         D     +++ R      VRVR    +  
Sbjct: 162 AKDAGISNWSKVASCSIASRIPYGIKLTRSAIDQVFASEKYLREIGFPIVRVRAHHDLAR 221

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           I++     K+    + R K+ + +      Y+T  +   
Sbjct: 222 IEIPE--DKLSLLLENRGKIADYLKKQGFNYVTFDLEGF 258


>gi|42526204|ref|NP_971302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema denticola ATCC 35405]
 gi|81570437|sp|Q73PV6|MNMA_TREDE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41816316|gb|AAS11183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema denticola ATCC 35405]
          Length = 366

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 64/218 (29%), Gaps = 49/218 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            +LV +SGG DS      L     D      +   K+          + +   D++    
Sbjct: 2   KVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLS--------GIYKEQTDDIEDAK 53

Query: 75  DVCSRLRIAHSV----VSWKNSKPQTGLMA--AAR----------EARYALISEHAKTIN 118
            V  +L I H V     ++K       +      R          + ++ L  E A    
Sbjct: 54  KVADKLGIKHIVYDMRETFKTEIIDYFVEEYKQGRTPNPCFICNSKIKFGLFLEQALKDG 113

Query: 119 ATLIMTAHTF--------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              I T H           D  E   +R   D  +       +        +++   P  
Sbjct: 114 FDKIATGHYAKIEKTEIEGD--ERFLLRQAEDAQKDQSYFLALLTQEQLSRSIF---PLG 168

Query: 171 RCRREDIRSFLLQRNI--SWCEDPSNT----DDRFERV 202
              +E +RS      +  +   D  +     DD + RV
Sbjct: 169 DFTKEKVRSIAEDAGLINAHRPDSQDICFVPDDDYTRV 206


>gi|255320585|ref|ZP_05361763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter radioresistens SK82]
 gi|262378583|ref|ZP_06071740.1| tRNA methyl transferase [Acinetobacter radioresistens SH164]
 gi|255302347|gb|EET81586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter radioresistens SK82]
 gi|262299868|gb|EEY87780.1| tRNA methyl transferase [Acinetobacter radioresistens SH164]
          Length = 377

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 40/197 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             VC R+ I     ++                AA R          E ++    +HA  +
Sbjct: 56  QAVCDRIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVKL 115

Query: 118 NATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H         + Q E       R           +      ++N  +  P  
Sbjct: 116 GADFIATGHYARRGETKYNSQGEAYA-ELLRGVDTNKDQTYFLHAVHGREINKTLF-PVG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              +  +R    +  ++
Sbjct: 174 EIEKPQVRKIAEELGLA 190


>gi|323139064|ref|ZP_08074123.1| GMP synthase, large subunit [Methylocystis sp. ATCC 49242]
 gi|322395724|gb|EFX98266.1| GMP synthase, large subunit [Methylocystis sp. ATCC 49242]
          Length = 534

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 61/193 (31%), Gaps = 28/193 (14%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE 69
             +R  V    +L  +SGG DS    + +H  + DR       + + VDH  LR    +E
Sbjct: 223 AAIRHQVGDGRVLCGLSGGVDSAVAAVLIHEAIGDR------LTCVFVDHGLLRLGEAEE 276

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINAT 120
           V  VS       I    V   +           P+       R          AK I   
Sbjct: 277 V--VSLFRDHYNIPLHHVEAADLFLGALEGVEDPEVKRKTIGRLF-IETFEAEAKKIAQD 333

Query: 121 ------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +     + D +E+V   S        +        +   +N+ +  P     +
Sbjct: 334 GRGAPQFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMALVEPLRELFK 390

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 391 DEVRALGRELGLP 403


>gi|238917726|ref|YP_002931243.1| GMP synthase (glutamine-hydrolysing) [Eubacterium eligens ATCC
           27750]
 gi|259647681|sp|C4Z3X1|GUAA_EUBE2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|238873086|gb|ACR72796.1| GMP synthase (glutamine-hydrolysing) [Eubacterium eligens ATCC
           27750]
          Length = 524

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 20/185 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 209 IREKVGSGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKDEGDEVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKTINA-TLI 122
            V     +  +    V+ +             EA+          +  E AK I A   +
Sbjct: 263 SVFGPEGQFDLNFIRVNAQERYYSKLAGVTEPEAKRKIIGEEFIRVFEEEAKKIGAVDFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+     +    +    + G+ D + +     I  P     ++++R   L
Sbjct: 323 AQGTIYPDVVESGL-GGESAVIKSHHNVGGLPDFVDFK---EIIEPLRNLFKDEVRKAGL 378

Query: 183 QRNIS 187
           +  I 
Sbjct: 379 ELGIP 383


>gi|222481007|ref|YP_002567244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorubrum lacusprofundi ATCC 49239]
 gi|222453909|gb|ACM58174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorubrum lacusprofundi ATCC 49239]
          Length = 334

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 54/188 (28%), Gaps = 38/188 (20%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYV 73
           L     +LVA SGG DS  +       L D     +  +A       R       E+   
Sbjct: 55  LAERDDVLVAFSGGVDSSVVAALACDALGD---DAVACTA-------RSETLPAAELDDA 104

Query: 74  SDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             V   + I H  V++                   R  R   + E A+ +    +     
Sbjct: 105 ERVAGEIGIRHETVTFSELDDPNFVANDGDRCYHCRTMRLGQMYETAQDLGIGTVCDGTN 164

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIRSFLLQRN 185
            DD  E                  G    +     L +  P L     ++++R      +
Sbjct: 165 ADDPGE------------------GHRPGLRAVEELDVFSPLLDAEITKDEVREIAEAYD 206

Query: 186 ISWCEDPS 193
           +S  + PS
Sbjct: 207 LSVADKPS 214


>gi|94498089|ref|ZP_01304652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. SKA58]
 gi|94422524|gb|EAT07562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingomonas sp. SKA58]
          Length = 368

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 51/202 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------RETAKDEVRYV 73
             I+VA+SGG DS  +        ++     ++      DH           A  ++R  
Sbjct: 14  RRIVVAMSGGVDSSVVAALAAKTGAEVIGVTLQLY----DHGAAVGRTGSCCAGQDIRDA 69

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL------------------ISEHAK 115
             V  R+ IAH V  +++    + +   A E  Y                    + + A+
Sbjct: 70  RAVADRIGIAHYVFDYESRFRDSVIADFADE--YMAGRTPIPCVKCNMGVKFTDLFQIAR 127

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLWI 165
            + A  + T H             +R     G  L    D                  ++
Sbjct: 128 DLGADCLATGH-----------YVRRVEGAAGAELHRAADPARDQSYFLFATTQAQLDYL 176

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     +  +R    +  +S
Sbjct: 177 RFPLGGLPKSQVREIAAELGLS 198


>gi|289424975|ref|ZP_06426754.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes SK187]
 gi|289154674|gb|EFD03360.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Propionibacterium acnes SK187]
          Length = 524

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 218 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 271

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + +       P+T      RE       + AK +NA     
Sbjct: 272 NDFVAATGADLVVADESQRFLDVLAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 331 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 385

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 386 GLELGLP--ED 394


>gi|229163345|ref|ZP_04291297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus R309803]
 gi|228620126|gb|EEK77000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus R309803]
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L     +++ +SGG DS    + L         +         +    +        A 
Sbjct: 4   KLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 55

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 56  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 115

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 116 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 170

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 171 PLGELKKPQIREMAKEAGLA 190


>gi|269955513|ref|YP_003325302.1| GMP synthase large subunit [Xylanimonas cellulosilytica DSM 15894]
 gi|269304194|gb|ACZ29744.1| GMP synthase, large subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 524

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 31/195 (15%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDE 69
             +R  V  A ++ A+SGG DS      +   + D      + + + VDH L R    ++
Sbjct: 211 ALIREQVGSARVICALSGGVDSAVAAALVQKAVGD------QLTCVHVDHGLMRAGEVEQ 264

Query: 70  VRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAARE-------ARYALISEH 113
           +    D  +   +   V   K          + P+T      RE       A+  +I + 
Sbjct: 265 IE--RDFVASTGVRLIVRDEKERFLTALAGVTDPETKRKIIGREFIRVFEDAQRQIIKDA 322

Query: 114 AKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +       +   T   D +E+             +        +  DL   +  P    
Sbjct: 323 GEAGEDVKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFELVEPLRAL 377

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 378 FKDEVRAVGRELGIP 392


>gi|218232235|ref|YP_002369206.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus B4264]
 gi|218160192|gb|ACK60184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus B4264]
          Length = 372

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L     +++ +SGG DS    + L         +         +    +        A 
Sbjct: 4   KLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 55

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 56  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 115

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 116 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 170

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 171 PLGELKKPQIREMAKEAGLA 190


>gi|325107944|ref|YP_004269012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces brasiliensis DSM 5305]
 gi|324968212|gb|ADY58990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planctomyces brasiliensis DSM 5305]
          Length = 370

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 40/201 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHS--------------------VLSDRSFGKIKFSAISVDH 60
            +++A+SGG DS      L                      +    +   I   A    H
Sbjct: 4   RVVLAMSGGVDSSAAAHLLQEQGYEVIGLFMRSGVNEETCSLDDPNALPVINLKA----H 59

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAARE----------A 105
                +  +      V   L I    ++++++  +          A R            
Sbjct: 60  KQGCCSASDAADARRVADELDIPFHALNFQDAFGRIKDYFADEYLAGRTPNPCVQCNNWL 119

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           ++  + E A+ + AT I + H      +      +R     G   S +   I  DL   I
Sbjct: 120 KFGKLWEFAQQVGATKIASGHYARITEQDGEYHLERGLDP-GKDQSYVLFGIRPDLLPHI 178

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P    ++ +IR    +  +
Sbjct: 179 LFPVGGFQKGEIREMAGEAGL 199


>gi|260426477|ref|ZP_05780456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citreicella sp. SE45]
 gi|260420969|gb|EEX14220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citreicella sp. SE45]
          Length = 380

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 70/230 (30%), Gaps = 49/230 (21%)

Query: 5   PIESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           P+++ +     L  P     ++VA+SGG DS  +   L     D     ++      DH 
Sbjct: 2   PLDAPKLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLY----DHG 57

Query: 62  LRET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------- 102
                       A  ++     V  ++   H V+ ++N      +   A           
Sbjct: 58  --AALAKKGACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVP 115

Query: 103 -----REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
                   ++  + E AK ++A  + T H           R   D   +    +      
Sbjct: 116 CIRCNERVKFKDLLETAKDLDADCMATGH--------YIQRMVGDRGPELHSAADANRDQ 167

Query: 158 LY------DLNLWISR-PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
            Y         L   R P      + + R+   +  +S  + P + D  F
Sbjct: 168 SYFLFSTTPEQLSFLRFPLGHLKSKAETRALAAKYGLSVADKPDSQDICF 217


>gi|330998316|ref|ZP_08322141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329568705|gb|EGG50506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 378

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 72/238 (30%), Gaps = 69/238 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------V 73
             +LV +SGG DS  + + L     +     ++   ++     R+       Y       
Sbjct: 6   KKVLVGMSGGIDSSAVCLMLQDEGYEVVGVTMRVWDLA-----RQFTDAGQEYPDFIQDA 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKTI 117
             + +RL I H V   + +     +        A R            ++ ++ E A  +
Sbjct: 61  RALAARLGIVHYVADERTAFKDIVVRDFVDEYLAGRTPNPCVMCNPAFKFRVLVEWADKL 120

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---------- 167
               I T H              R   E G            D + ++ R          
Sbjct: 121 GCDYIATGH------------YVRVKEEDGHYALYCGVDGKKDQSYFLWRLGQDVLSRCI 168

Query: 168 -PFLRCRREDIRSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDID 212
            P    R+ED+R +L ++             I +       D  + R  +R  V D+D
Sbjct: 169 FPLGAMRKEDVRGYLARKGFEMKARSGESMEICFI------DKDY-RDFLREQVPDLD 219


>gi|322435678|ref|YP_004217890.1| Queuosine synthesis-like protein [Acidobacterium sp. MP5ACTX9]
 gi|321163405|gb|ADW69110.1| Queuosine synthesis-like protein [Acidobacterium sp. MP5ACTX9]
          Length = 279

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 82/264 (31%), Gaps = 43/264 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E      ++L     +L+A SGG+DS  L  A H  L D+    I              +
Sbjct: 5   EKSALLYQTLQDLGSVLIAYSGGTDSAYLAYAAHQTLGDKMLAVI------------ADS 52

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------RYALISEHAKT 116
               + E+       +   I   ++     +    +   AR         +A +  +  T
Sbjct: 53  PSLPRAELAQALAFTATHNIPTHILQTDELEKPDYIRNDARRCFHCKDTLFAAMESYRAT 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                +      DDQ               G    G     L++    +        +++
Sbjct: 113 YAFAHLAYGMNLDDQ---------------GDFRPGQQAATLHNAVAPLV--TAHLTKKE 155

Query: 177 IRSFLLQRNISWCEDPSNTDD----RFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
           IR    Q N++  + P++        + R   R  +  ++     L    F  +RV+ + 
Sbjct: 156 IRLLAQQANLTLWDKPASACLSSRIEYGRPVTRENLSQVEQAEAALHTLGFPQVRVRHHG 215

Query: 233 AVAMLIPKYLTVHMRSIIAISQDI 256
            +A +      +     +A+   I
Sbjct: 216 DLARIEIAREDLPRALSLAVLDQI 239


>gi|282860894|ref|ZP_06269960.1| GMP synthase, large subunit [Streptomyces sp. ACTE]
 gi|282564630|gb|EFB70166.1| GMP synthase, large subunit [Streptomyces sp. ACTE]
          Length = 530

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 68/196 (34%), Gaps = 20/196 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E     +R  V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 211 NVVEEQIALIREQVGTKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 264

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   + ++          R+          +   A 
Sbjct: 265 RKGETEQVEKDFVAATGVQLKVVDAEKRFLDALAGVSDPEQKRKIIGREFIRVFEQAQAE 324

Query: 121 LIMTAHTFDDQLETVYMRSQ---------RDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++  A   +D      ++                  +        +  D+   +  P  +
Sbjct: 325 IVAEAAEGEDVA--FLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDIEFQLVEPLRQ 382

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +  + 
Sbjct: 383 LFKDEVRMVGQELGLP 398


>gi|209528181|ref|ZP_03276652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrospira maxima CS-328]
 gi|209491390|gb|EDZ91774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arthrospira maxima CS-328]
          Length = 359

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 55/201 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIK----FSAISVDHCLRETAK 67
            I+V +SGG DS      LH          +   R  G+        A  +         
Sbjct: 3   KIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLMRGKGQCCSEGMVDAAHI--------- 53

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGL----MAAA-REARYA-LI 110
                    C +L I H +V  ++                G+     +   R  ++  ++
Sbjct: 54  ---------CEQLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPML 104

Query: 111 SEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
              +  +N   I T H      + Q +    + +R           + D +  DL   + 
Sbjct: 105 GYASTELNINHIATGHYARVSYNSQCD--RHQLKRAVDRTKDQSYFLYD-LTQDLLAGVV 161

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + + R    Q N+ 
Sbjct: 162 FPLGEVPKSETRRIAAQYNLK 182


>gi|197284773|ref|YP_002150645.1| tRNA-specific 2-thiouridylase MnmA [Proteus mirabilis HI4320]
 gi|227357779|ref|ZP_03842128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Proteus mirabilis ATCC 29906]
 gi|229486421|sp|B4EVG2|MNMA_PROMH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|194682260|emb|CAR41993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Proteus mirabilis HI4320]
 gi|227162108|gb|EEI47122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Proteus mirabilis ATCC 29906]
          Length = 367

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNW----------EEDDDTEYCSASADL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 57  ADAQAVCDKLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|229591246|ref|YP_002873365.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens SBW25]
 gi|259495834|sp|C3JY68|MNMA_PSEFS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|229363112|emb|CAY50124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas fluorescens SBW25]
          Length = 374

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 58/196 (29%), Gaps = 38/196 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
               ++V +SGG DS    + L     +     +K           E        A D++
Sbjct: 10  QKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMK--------NWEEDDGTEYCTAMDDL 61

Query: 71  RYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHA 114
                VC ++ I     +     W N          A           RE ++    ++A
Sbjct: 62  ADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYA 121

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             + A LI T H     D    T  ++      ++   L  +    +         P   
Sbjct: 122 MMLGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKT----LFPVGE 177

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  ++
Sbjct: 178 LEKPEVRKIAEKHGLA 193


>gi|210610918|ref|ZP_03288643.1| hypothetical protein CLONEX_00833 [Clostridium nexile DSM 1787]
 gi|210152218|gb|EEA83225.1| hypothetical protein CLONEX_00833 [Clostridium nexile DSM 1787]
          Length = 514

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVENSIKAIREKVGDGKVLCALSGGVDSSVAAVMLSKAV------GSQLTCVFVDHGLL 253

Query: 63  RETAKDEVR 71
           R+   DEV 
Sbjct: 254 RKNEGDEVE 262


>gi|169335396|ref|ZP_02862589.1| hypothetical protein ANASTE_01808 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258134|gb|EDS72100.1| hypothetical protein ANASTE_01808 [Anaerofustis stercorihominis DSM
           17244]
          Length = 515

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     ++  V    +L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 202 SFVEDTIKNIKEKVGNGKVLCALSGGVDSSVAAVMLAKAVGK------QLTCVFVDHGLL 255

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 256 RKNEGDEVEAV 266


>gi|116751037|ref|YP_847724.1| ExsB family protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700101|gb|ABK19289.1| GMP synthase (glutamine-hydrolyzing) [Syntrophobacter fumaroxidans
           MPOB]
          Length = 320

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 24/173 (13%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLRIA 83
           A+SGG DS  + +  H  L +R         + +++ L RE    E   V+     L + 
Sbjct: 35  ALSGGVDSSTVTLLGHRALGNR------LRTVFIENGLMREG---EAAQVAGWFRELGVT 85

Query: 84  HSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             VV  ++           P+    A  +     +     K   A  ++      D  ET
Sbjct: 86  VDVVEARDEFFAALAGIADPEEKREAITQTFYRDVFGRIVKESGARYLLQGTILTDIDET 145

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           +    ++    + +G+              I  P +  R++ +R+      + 
Sbjct: 146 IAGIKRQHNVFEQLGIDPQDA-----FGYRIIEPLIELRKDGVRAVGKALGLP 193


>gi|71897609|ref|ZP_00679854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
 gi|71732512|gb|EAO34565.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xylella fastidiosa Ann-1]
          Length = 379

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/232 (19%), Positives = 79/232 (34%), Gaps = 33/232 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+VA+SGG DS      L+S         +     + D   +  A+++ R    VC  L
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQREA--IAGLFMRNWTDDGNGQCHAEEDRRDAVAVCGIL 62

Query: 81  RIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEHAKTINATLIMT 124
            IA     + +   Q      L   A            RE ++    E A+ + A  I T
Sbjct: 63  GIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRIAT 122

Query: 125 AHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            H    ++E        +R      ++   L  +    L         P     ++ +R 
Sbjct: 123 GHYA--RIEHYRQRWRLLRGADRSKDQSYFLHQLGQEQLAAT----LFPIGDLEKQQLRQ 176

Query: 180 FLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
              Q  +     +D +      ER   R F++   L A   +++  Q+ R+ 
Sbjct: 177 LAHQTGLPTHAKKDSTGICFIGERNF-REFLKQY-LPAQPGEIRDPQEQRIA 226


>gi|317498604|ref|ZP_07956897.1| GMP synthase domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894091|gb|EFV16280.1| GMP synthase domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 515

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 210 IREKVGDGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKDEGDEVE 263

Query: 72  YV 73
            V
Sbjct: 264 GV 265


>gi|282855790|ref|ZP_06265096.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
 gi|282586422|gb|EFB91684.1| conserved hypothetical protein [Pyramidobacter piscolens W5455]
          Length = 269

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 63/202 (31%), Gaps = 46/202 (22%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              E ++  +R L     + VA SGG DS  LL A    L DR        AI+      
Sbjct: 6   EKYERLKDLLRGL---GGVAVAFSGGVDSTFLLKAAREALGDR------VLAIT------ 50

Query: 64  ETA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEH 113
             +    + E+    + C R RI H +            +         + A +  +   
Sbjct: 51  AQSCFFPRRELDEADEFCERERIRHEICVCDELSVPGIRENPRNRCYLCKRALFEKMIAL 110

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           A +     +      DD              +   GL  + +       L +  P     
Sbjct: 111 AASRGFRRVAEGSNMDD------------MGDYRPGLQAVAE-------LGVKSPLRDAG 151

Query: 172 CRREDIRSFLLQRNISWCEDPS 193
            R+++IR+   +  +     PS
Sbjct: 152 LRKDEIRALSKELGLPTWNKPS 173


>gi|253579384|ref|ZP_04856654.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849482|gb|EES77442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 525

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 210 IREKVGDGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKDEGDEVE 263

Query: 72  YV 73
            V
Sbjct: 264 GV 265


>gi|167767535|ref|ZP_02439588.1| hypothetical protein CLOSS21_02054 [Clostridium sp. SS2/1]
 gi|167710827|gb|EDS21406.1| hypothetical protein CLOSS21_02054 [Clostridium sp. SS2/1]
          Length = 515

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 210 IREKVGDGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKDEGDEVE 263

Query: 72  YV 73
            V
Sbjct: 264 GV 265


>gi|166032156|ref|ZP_02234985.1| hypothetical protein DORFOR_01859 [Dorea formicigenerans ATCC
           27755]
 gi|166027879|gb|EDR46636.1| hypothetical protein DORFOR_01859 [Dorea formicigenerans ATCC
           27755]
          Length = 515

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 210 IREKVGDGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKDEGDEVE 263

Query: 72  YV 73
            V
Sbjct: 264 GV 265


>gi|163815111|ref|ZP_02206492.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759]
 gi|158449520|gb|EDP26515.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759]
          Length = 363

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 42/196 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS-----------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           + V +SGG DS    + L             +  D     +   A      L   A D+ 
Sbjct: 11  VCVGMSGGVDSSVAALLLKEQGYNVIGVTMQIWQDEDRDVVSAHAGCC--GLS--AVDDA 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHA 114
           R V    S+L I + V+++K    +                    A  R  ++  +    
Sbjct: 67  RRV---ASQLDIPYYVMNFKEEFKKYVIDYFVDEYKHGRTPNPCIACNRYVKWESLLTRC 123

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISR---PFL 170
             I    I T H        + + + R   ++  G+       LY+     ++R   P  
Sbjct: 124 MAIGGDYIATGH----YARIIQLPNGRYTLQEARGIDKDQTYALYNLTQEQLARTLMPVG 179

Query: 171 RCRREDIRSFLLQRNI 186
              + +IR       +
Sbjct: 180 EYSKPEIRKIAEDHGL 195


>gi|153811188|ref|ZP_01963856.1| hypothetical protein RUMOBE_01580 [Ruminococcus obeum ATCC 29174]
 gi|149832686|gb|EDM87770.1| hypothetical protein RUMOBE_01580 [Ruminococcus obeum ATCC 29174]
          Length = 481

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +        + + + VDH  LR+   DEV 
Sbjct: 166 IREKVGDGKVLLALSGGVDSSVAAGLLSRAIGK------QLTCVFVDHGLLRKDEGDEVE 219

Query: 72  YV 73
            V
Sbjct: 220 GV 221


>gi|329119897|ref|ZP_08248571.1| GMP synthase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464053|gb|EGF10364.1| GMP synthase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 521

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR+    E +
Sbjct: 211 IREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRQN---EGK 261

Query: 72  YVSD-VCSRLRIAHSVVSWKNSK----PQTGLMAAAREAR---YALISEHAKTI----NA 119
            V D     L +   V+     K       G+    R+ +      I           NA
Sbjct: 262 MVMDMFARNLGV--RVIHVDAEKQFLDKLAGVTDPERKRKIIGAEFIEVFDAEEKKLTNA 319

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++ L +  P     ++++R 
Sbjct: 320 KWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRE 376

Query: 180 FLLQRNIS 187
             +   + 
Sbjct: 377 LGVALGLP 384


>gi|262306003|gb|ACY45594.1| gln amidotransferase [Achelia echinata]
          Length = 197

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           +E VR  ++  V  + +LV VSGG DS      LH  L        +  A+ +D+   R+
Sbjct: 31  MECVRS-IQXAVGSSKVLVLVSGGVDSTVCAALLHKALQ-----PEQVIAVHIDNGFMRK 84

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVS 88
               E + V +   +L +   VV+
Sbjct: 85  E---ESKQVEESLRKLGLHLLVVN 105


>gi|319759218|gb|ADV71160.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis JS14]
          Length = 419

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 37/196 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     +          TA ++ +
Sbjct: 51  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGFC-------TATEDYK 103

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAK 115
            V+ V  ++ I +  V+++            A  R  R             +    ++A 
Sbjct: 104 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 163

Query: 116 TINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            + A  + T H    T D+      +R   +  ++   LS +    L         P   
Sbjct: 164 NLGADYVATGHYAQVTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMF----PLGH 219

Query: 172 CRREDIRSFLLQRNIS 187
            ++  +R    +  ++
Sbjct: 220 LQKPQVREIAERAGLA 235


>gi|315920277|ref|ZP_07916517.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694152|gb|EFS30987.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 361

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 39/187 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAVR 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  +N   I 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWIA 113

Query: 124 TAHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           T H    +LE     T  +    D  ++   L  +   +L         P     +  +R
Sbjct: 114 TGHYS--RLEEKNGYTYIVAGDDDKKDQSYFLWRLGQEVLKRC----IFPLGDYTKVKVR 167

Query: 179 SFLLQRN 185
            +L ++ 
Sbjct: 168 EYLAEKG 174


>gi|146322015|ref|YP_001201726.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 98HAH33]
 gi|145692821|gb|ABP93326.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus suis 98HAH33]
 gi|292559420|gb|ADE32421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis GZ1]
          Length = 423

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 37/196 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     +          TA ++ +
Sbjct: 55  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGFC-------TATEDYK 107

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAK 115
            V+ V  ++ I +  V+++            A  R  R             +    ++A 
Sbjct: 108 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 167

Query: 116 TINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            + A  + T H    T D+      +R   +  ++   LS +    L         P   
Sbjct: 168 NLGADYVATGHYAQVTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMF----PLGH 223

Query: 172 CRREDIRSFLLQRNIS 187
            ++  +R    +  ++
Sbjct: 224 LQKPQVREIAERAGLA 239


>gi|146319824|ref|YP_001199536.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 05ZYH33]
 gi|253752800|ref|YP_003025941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis SC84]
 gi|253754625|ref|YP_003027766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis P1/7]
 gi|253756558|ref|YP_003029698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis BM407]
 gi|205828994|sp|A4VYE7|MNMA_STRSY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829102|sp|A4W4N7|MNMA_STRS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145690630|gb|ABP91136.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Streptococcus suis 05ZYH33]
 gi|251817089|emb|CAZ52741.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis SC84]
 gi|251819022|emb|CAZ56869.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis BM407]
 gi|251820871|emb|CAR47637.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis P1/7]
          Length = 374

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 37/196 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     +          TA ++ +
Sbjct: 6   SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGFC-------TATEDYK 58

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAK 115
            V+ V  ++ I +  V+++            A  R  R             +    ++A 
Sbjct: 59  DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 118

Query: 116 TINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            + A  + T H    T D+      +R   +  ++   LS +    L         P   
Sbjct: 119 NLGADYVATGHYAQVTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMF----PLGH 174

Query: 172 CRREDIRSFLLQRNIS 187
            ++  +R    +  ++
Sbjct: 175 LQKPQVREIAERAGLA 190


>gi|169774339|ref|XP_001821637.1| GMP synthase [glutamine-hydrolyzing] [Aspergillus oryzae RIB40]
 gi|238497143|ref|XP_002379807.1| GMP synthase [Aspergillus flavus NRRL3357]
 gi|121802477|sp|Q2UFN0|GUAA_ASPOR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83769500|dbj|BAE59635.1| unnamed protein product [Aspergillus oryzae]
 gi|220694687|gb|EED51031.1| GMP synthase [Aspergillus flavus NRRL3357]
          Length = 541

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 33/199 (16%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +R LV P   +L AVSGG DS      +   + DR      F A+ VD    R     E 
Sbjct: 223 IRKLVGPTGQVLGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDTGFMRLN---EC 273

Query: 71  RYVSD-VCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTINATLI--M 123
             V   +   L I   V      +             R+       +  +   A  I   
Sbjct: 274 EQVKQTLAEHLGINLIVADASQVFMEGLKGISDPEQKRKFIGNKFIDVFEEE-AKKIEDA 332

Query: 124 TAHTFD--------------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            AH+                D +E++  +      +    + G+   +     L +  P 
Sbjct: 333 AAHSETAGKIGFFLQGTLYPDVIESISFKGPSATIKTHHNVGGLPKRMTEGQGLKLIEPL 392

Query: 170 LRCRREDIRSFLLQRNISW 188
               ++++R    Q  I+ 
Sbjct: 393 RELFKDEVRDLGRQLGIAH 411


>gi|119775197|ref|YP_927937.1| tRNA-specific 2-thiouridylase MnmA [Shewanella amazonensis SB2B]
 gi|205816912|sp|A1S7B1|MNMA_SHEAM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119767697|gb|ABM00268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella amazonensis SB2B]
          Length = 377

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 39/194 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A ++++ 
Sbjct: 17  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDTDEYCAAAEDLKD 68

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    V++             A  +  R               A +     
Sbjct: 69  AQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADD 128

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            ++A  I   H     D   +T  +R      ++   L  +    +         P    
Sbjct: 129 ILDADYIAMGHYVRRRDTDGKTEMLRGIDGNKDQSYFLYTLSHEQVARS----LFPVGEL 184

Query: 173 RREDIRSFLLQRNI 186
            + ++R    ++ +
Sbjct: 185 EKPEVRRIAEEQGL 198


>gi|295692704|ref|YP_003601314.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus crispatus ST1]
 gi|295030810|emb|CBL50289.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus ST1]
          Length = 375

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 40/221 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     S +        TA ++  
Sbjct: 5   SKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGVC-------TATEDYE 57

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
            V  V  ++ I +  ++++                  R          + ++    E A 
Sbjct: 58  DVKKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAM 117

Query: 116 TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            ++A  I   H      D    T  MR +    ++   LS +    +      +  P   
Sbjct: 118 DLDADYIAMGHYAKTVKDANGVTHMMRPKDGNKDQTYFLSQLSQEQISK----VIFPLAN 173

Query: 172 CRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +  +R   L   ++    +D +      ER   R+F+ +
Sbjct: 174 LTKPQVREIALANGLATAKKKDSTGICFIGERNF-RKFLSE 213


>gi|262306023|gb|ACY45604.1| gln amidotransferase [Carcinoscorpius rotundicauda]
          Length = 196

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    IE +  F++  V    +L+ VSGG DS      +H     R+ G+ +  AI V++
Sbjct: 26  MHSREIECIE-FIKKTVGDKKVLMLVSGGVDSTVCAALVH-----RALGEERLIAIHVNN 79

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVS 88
              R+    E   V     +L +   VV 
Sbjct: 80  GFMRKN---ESLQVEHSLRQLGLKLRVVD 105


>gi|88860122|ref|ZP_01134761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas tunicata D2]
 gi|88818116|gb|EAR27932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas tunicata D2]
          Length = 366

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 32/130 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A D+++  
Sbjct: 8   KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDTDEYCAAADDLKDA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC +L I    V++ +              +  R               A +   A+ 
Sbjct: 60  QAVCEKLGIPLHTVNFASEYWDNVFQYFLEEYKAGRTPNPDIMCNKEIKFKAFLQFAAEA 119

Query: 117 INATLIMTAH 126
           +NA  I T H
Sbjct: 120 LNADFIATGH 129


>gi|146277904|ref|YP_001168063.1| GMP synthase [Rhodobacter sphaeroides ATCC 17025]
 gi|226739713|sp|A4WTP4|GUAA_RHOS5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145556145|gb|ABP70758.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacter sphaeroides ATCC
           17025]
          Length = 518

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR   A+  V
Sbjct: 214 IRAQVGDQKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLGEAEQVV 267

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
               D      +        +         S P+       R          A    AT 
Sbjct: 268 TMFRD---HYNMPLIHADESDLFLGALEGVSDPEVKRKTIGRLFIDVFQKHAADVGGATF 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 325 LAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALG 381

Query: 182 LQRNIS 187
            +  + 
Sbjct: 382 RELGLP 387


>gi|307291609|ref|ZP_07571485.1| GMP synthase protein [Enterococcus faecalis TX0411]
 gi|306497370|gb|EFM66911.1| GMP synthase protein [Enterococcus faecalis TX0411]
          Length = 520

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 216 IREQVDDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 267 QVMESLGGKFGLNIIKVDAKERFLSKLVGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +   +      I W 
Sbjct: 381 ALGTELGMPDAIVWR 395


>gi|92118055|ref|YP_577784.1| GMP synthase [Nitrobacter hamburgensis X14]
 gi|122990144|sp|Q1QKC3|GUAA_NITHX RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91800949|gb|ABE63324.1| GMP synthase (glutamine-hydrolyzing) [Nitrobacter hamburgensis X14]
          Length = 540

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 67/192 (34%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    I +H  + +      + + + VDH  LR   KDE +
Sbjct: 231 IRAQVGKGRVICGLSGGVDSSVAAILIHEAIGE------QLTCVFVDHGMLR---KDEGK 281

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAR------EARYALISEHAK 115
            V ++      I    V             + P+       R      EA    I+    
Sbjct: 282 TVVELFRHHYNIPLVHVDASKQFLGELAGVTDPEMKRKTIGRLFIDVFEAEAKKIA-ALG 340

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +     + D +E+V   S        +        +   +N+ +  P     ++
Sbjct: 341 KGSAEFLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPDRMNMKLVEPLRELFKD 397

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  + 
Sbjct: 398 EVRALGRELGLP 409


>gi|315925493|ref|ZP_07921703.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621034|gb|EFV01005.1| PP-loop family protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 293

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 40/196 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            +++  +RSL     + VA SGG DS  LL A H VL D++ G      ++V       A
Sbjct: 29  AALKANIRSL---GSVAVAFSGGVDSTLLLKAAHDVLGDKAIG------VTV------QA 73

Query: 67  K----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                 E+   +D C   +I   +V   ++    G      +  Y       K  N + I
Sbjct: 74  DIVPPREMEEAADFCKTEQIR-QIVCGVDALGLEGFADNPPDRCY-----WCKKNNFSEI 127

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRREDI 177
           +           +   +      +G  L  + D          L +  P       ++DI
Sbjct: 128 L----------KIAAANGFAAVAEGSNLDDLGDYRPGMQAVAELAVVSPLREAGLTKDDI 177

Query: 178 RSFLLQRNISWCEDPS 193
           R+   +  +   + PS
Sbjct: 178 RAISRELGLPTWDKPS 193


>gi|297529272|ref|YP_003670547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. C56-T3]
 gi|297252524|gb|ADI25970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. C56-T3]
          Length = 371

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 61/199 (30%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
            +   ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YEDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMR-----SQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A +I A  I T H    ++E    R       R           +   +       +  P
Sbjct: 117 AMSIGADYIATGHYA--RVE---FRDGEYKMLRGADPNKDQTYFLNQ-LGQAQLSKVMFP 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ D+R    +  ++
Sbjct: 171 IGHLQKADVRRIAKEAGLA 189


>gi|261418420|ref|YP_003252102.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. Y412MC61]
 gi|319767620|ref|YP_004133121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y412MC52]
 gi|261374877|gb|ACX77620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y412MC61]
 gi|317112486|gb|ADU94978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y412MC52]
          Length = 371

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 61/199 (30%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
            +   ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YEDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMR-----SQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A +I A  I T H    ++E    R       R           +   +       +  P
Sbjct: 117 AMSIGADYIATGHYA--RVE---FRDGEYKMLRGADPNKDQTYFLNQ-LGQAQLSKVMFP 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ D+R    +  ++
Sbjct: 171 IGHLQKADVRRIAKEAGLA 189


>gi|213409906|ref|XP_002175723.1| GMP synthase [Schizosaccharomyces japonicus yFS275]
 gi|212003770|gb|EEB09430.1| GMP synthase [Schizosaccharomyces japonicus yFS275]
          Length = 539

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 28/201 (13%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + ++     +R ++ P  H++ AVSGG DS      L   + DR      F AI VD+  
Sbjct: 220 NFVDKEIDRIRKMIGPNEHVIGAVSGGVDSTVAAKVLKEAIDDR------FHAIMVDNGL 273

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEH 113
           LR    +EVR    +   L I  +VV                E +  +            
Sbjct: 274 LRLNEAEEVR--QTLGEYLGIKLTVVDASEEFIGKLAGVTDPEKKRKIIGNTFIHVFERE 331

Query: 114 AKTI------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           A+ I          ++    + D +E++  +      +    + G+    L D+ L +  
Sbjct: 332 AERIVSETSGKVEYLLQGTLYPDVIESISFKGPSQTIKTHHNVGGL----LADMKLKLIE 387

Query: 168 PFLRCRREDIRSFLLQRNISW 188
           P     ++++R       I  
Sbjct: 388 PLRELFKDEVRQLGELLGIEH 408


>gi|256005388|ref|ZP_05430352.1| GMP synthase, large subunit [Clostridium thermocellum DSM 2360]
 gi|281417096|ref|ZP_06248116.1| GMP synthase, large subunit [Clostridium thermocellum JW20]
 gi|255990614|gb|EEU00732.1| GMP synthase, large subunit [Clostridium thermocellum DSM 2360]
 gi|281408498|gb|EFB38756.1| GMP synthase, large subunit [Clostridium thermocellum JW20]
 gi|316940865|gb|ADU74899.1| GMP synthase, large subunit [Clostridium thermocellum DSM 1313]
          Length = 511

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 25/198 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +R  V    +L A+SGG DS    + +H  +        + + I VDH  L
Sbjct: 200 SFIEHSINSIREKVGDKKVLCALSGGVDSSVAAVLVHKAVGK------QLTCIFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHA 114
           R+   D+V  V     +  I+   V+ ++   +   G+    R+ +        +  E A
Sbjct: 254 RKYEGDQVEEVFK--KQFDISLIRVNAEDRFLEKLKGVTDPERKRKIIGEEFIRVFEEEA 311

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           K I     ++    + D +E+    +    +   +G  G+ D I +     I  P     
Sbjct: 312 KKIGTVDFLVQGTIYPDVIESGVGDAAVIKSHHNVG--GLPDYIDFK---EIIEPLRSLF 366

Query: 174 REDIRSFLLQRNISWCED 191
           ++++R   ++  I   ED
Sbjct: 367 KDEVRKVGIELGIP--ED 382


>gi|157691340|ref|YP_001485802.1| GMP synthase [Bacillus pumilus SAFR-032]
 gi|226738387|sp|A8FAH5|GUAA_BACP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157680098|gb|ABV61242.1| GMP synthase (glutamine-hydrolyzing) [Bacillus pumilus SAFR-032]
          Length = 513

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 203 NFIEIEMQKIRETVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+         S P+        E  Y    E
Sbjct: 257 RKG---EAEGVMKTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 314 SDKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  I 
Sbjct: 368 FKDEVRALGSELGIP 382


>gi|56421098|ref|YP_148416.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus
           HTA426]
 gi|81557817|sp|Q5KWT8|MNMA2_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|56380940|dbj|BAD76848.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Geobacillus kaustophilus HTA426]
          Length = 371

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 61/199 (30%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
            +   ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YEDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMR-----SQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A +I A  I T H    ++E    R       R           +   +       +  P
Sbjct: 117 AMSIGADYIATGHYA--RVE---FRDGEYKMLRGADPNKDQTYFLNQ-LGQAQLSKVMFP 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ D+R    +  ++
Sbjct: 171 IGHLQKADVRRIAKEAGLA 189


>gi|125972896|ref|YP_001036806.1| GMP synthase [Clostridium thermocellum ATCC 27405]
 gi|259647675|sp|A3DCD4|GUAA_CLOTH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|125713121|gb|ABN51613.1| GMP synthase (glutamine-hydrolyzing) [Clostridium thermocellum ATCC
           27405]
          Length = 511

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 25/198 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +R  V    +L A+SGG DS    + +H  +        + + I VDH  L
Sbjct: 200 SFIEHSINSIREKVGDKKVLCALSGGVDSSVAAVLVHKAVGK------QLTCIFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHA 114
           R+   D+V  V     +  I+   V+ ++   +   G+    R+ +        +  E A
Sbjct: 254 RKYEGDQVEEVFK--KQFDISLIRVNAEDRFLEKLKGVTDPERKRKIIGEEFIRVFEEEA 311

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           K I     ++    + D +E+    +    +   +G  G+ D I +     I  P     
Sbjct: 312 KKIGTVDFLVQGTIYPDVIESGVGDAAVIKSHHNVG--GLPDYIDFK---EIIEPLRSLF 366

Query: 174 REDIRSFLLQRNISWCED 191
           ++++R   ++  I   ED
Sbjct: 367 KDEVRKVGIELGIP--ED 382


>gi|297587726|ref|ZP_06946370.1| GMP synthase (glutamine-hydrolyzing) [Finegoldia magna ATCC 53516]
 gi|297574415|gb|EFH93135.1| GMP synthase (glutamine-hydrolyzing) [Finegoldia magna ATCC 53516]
          Length = 510

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS      L   +          + + VDH L R+   DEV 
Sbjct: 209 IRKTVGDKKVLLALSGGVDSSVCASLLSRAIGK------NLTCVFVDHGLMRKNEGDEVE 262

Query: 72  YV 73
             
Sbjct: 263 AA 264


>gi|325967840|ref|YP_004244032.1| queuosine synthesis protein [Vulcanisaeta moutnovskia 768-28]
 gi|323707043|gb|ADY00530.1| Queuosine synthesis [Vulcanisaeta moutnovskia 768-28]
          Length = 235

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 69/187 (36%), Gaps = 34/187 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE-VRYVSDVCS-- 78
           IL+ +SGG DS   L  L S             AIS+++  R   + E  R ++ + +  
Sbjct: 6   ILL-LSGGIDSAVALYLLKS-------RNYDVVAISINYPGRGERERESARILAKLTNTR 57

Query: 79  --RLRIAH--SVVSWKNSKPQTGLMAA--------AREAR-YALISEHAKTINATLIMTA 125
              + I     +V   N+K +              AR A  YA+ + +A+ +   +I+  
Sbjct: 58  LIEVDIPFMKEIVELWNNKEERPEHLRDAHPSTIPARNAIIYAVAAYYAEILGINIIVAG 117

Query: 126 HTFDDQLETVYM----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           H  DD   T Y     R  R    + + +            L +  P  +  + ++    
Sbjct: 118 HNADD---TKYFPDTSRMFRKIISRALTIGTHIGKT---KGLRVIAPLSKLNKTEVVKLG 171

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 172 LKLGVPF 178


>gi|227549907|ref|ZP_03979956.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078003|gb|EEI15966.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 517

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKD--E 69
           V+  V   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR+  ++  E
Sbjct: 211 VKQQVGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRQGEREQVE 264

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +V+   ++L +          K        A+          +     + +++ HT D
Sbjct: 265 QDFVAATGAKL-VTVDEREAFLDKLAGVTEPEAKRKVIGAEFIRSFERAVSSVLSDHTVD 323

Query: 130 ---------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
                    D +E+             +        +  D+   +  P     ++++R+ 
Sbjct: 324 YLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDVEFKLVEPLRLLFKDEVRAV 378

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 379 GRELGLP 385


>gi|282854547|ref|ZP_06263883.1| NAD+ synthetase [Propionibacterium acnes J139]
 gi|282582408|gb|EFB87789.1| NAD+ synthetase [Propionibacterium acnes J139]
 gi|314922030|gb|EFS85861.1| NAD+ synthetase [Propionibacterium acnes HL001PA1]
 gi|314965986|gb|EFT10085.1| NAD+ synthetase [Propionibacterium acnes HL082PA2]
 gi|314980691|gb|EFT24785.1| NAD+ synthetase [Propionibacterium acnes HL110PA3]
 gi|315090990|gb|EFT62966.1| NAD+ synthetase [Propionibacterium acnes HL110PA4]
 gi|315095215|gb|EFT67191.1| NAD+ synthetase [Propionibacterium acnes HL060PA1]
 gi|315105332|gb|EFT77308.1| NAD+ synthetase [Propionibacterium acnes HL050PA2]
 gi|327328842|gb|EGE70602.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL103PA1]
          Length = 689

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      DH  
Sbjct: 360 LRRRLESMRSP-QIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTMPGFATTDH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDLCRALGIPCEVLDIRPAATQMLKGMSHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|288932827|ref|YP_003436887.1| asparagine synthase [Ferroglobus placidus DSM 10642]
 gi|288895075|gb|ADC66612.1| asparagine synthase [Ferroglobus placidus DSM 10642]
          Length = 265

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 60/202 (29%), Gaps = 41/202 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  + ++ +  F+ +      ++VA SGG DS  L    + +         +  A+++  
Sbjct: 1   MNEAKLKKLEKFISNF---ESVVVAFSGGVDSSTLAGLANELT--------EVLAVTI-- 47

Query: 61  CLRETA-KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---GLMAAAR---EARYALISEH 113
            +  T    E+R    +   L + H        + +                    + + 
Sbjct: 48  -ISPTTPSREIRDAERIARELNLKHRFHELNELEDENFVRNTEDRCYFCKRMVLTSLKKI 106

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           A+      +       +          + +      +  + D         +  P+    
Sbjct: 107 AEKEGYEAVFEGTNASE---------LQGHRPGYRAVVELED---------VYSPWAIFG 148

Query: 172 CRREDIRSFLLQRNISWCEDPS 193
             +E+IR     +  S+   PS
Sbjct: 149 FTKEEIREIAKMKGYSFWNKPS 170


>gi|58337130|ref|YP_193715.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus NCFM]
 gi|227903706|ref|ZP_04021511.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
 gi|73920126|sp|Q5FKU0|MNMA_LACAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58254447|gb|AAV42684.1| tRNA-methyltransferase [Lactobacillus acidophilus NCFM]
 gi|227868593|gb|EEJ76014.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796]
          Length = 375

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 40/218 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++                  R          + ++    E A  ++
Sbjct: 61  KVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D    T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYIAMGHYAKTITDANGVTHMMRPKDGNKDQTYFLSQLSQDQIKK----VIFPLANLTK 176

Query: 175 EDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +R   L   +     +D +      ER   R+F+ +
Sbjct: 177 PQVREIALANGLVTAKKKDSTGICFIGERNF-RKFLSE 213


>gi|238789081|ref|ZP_04632870.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC
           33641]
 gi|238722845|gb|EEQ14496.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC
           33641]
          Length = 373

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 52/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDDEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    L         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q  +
Sbjct: 173 ELEKPEVRRIAEQLEL 188


>gi|321460868|gb|EFX71906.1| hypothetical protein DAPPUDRAFT_308688 [Daphnia pulex]
          Length = 686

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 69/199 (34%), Gaps = 25/199 (12%)

Query: 12  FVRSLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKD 68
           ++R  V    I++  VSGG DS      LH  L        +  AI +D+  LR + ++ 
Sbjct: 225 YIRRTVGRDKIVLMLVSGGVDSAVCAALLHKALQQ-GDDSSRVQAIHIDNGFLRKDESEQ 283

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSK------------PQTGLMAAAR-------EARYAL 109
            V  +  +   LR+  + +++ ++                      R       +     
Sbjct: 284 VVTSLQQLGLNLRVVKASLTFYDASTNVHGRQTLSLCRTVNPEEKRRIIGDTFVKVADRT 343

Query: 110 ISEHAKTINATLIMTAHTFDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            ++   T +  L+       D +E+  +M S R  A K    +          +  +  P
Sbjct: 344 ANDLNLTWDNLLLGQGTLRPDLIESASHMASSRADAIK-THHNDSEMVRQLRHHGRVVEP 402

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R+   +  + 
Sbjct: 403 LKDFHKDEVRALGRELGLP 421


>gi|225376291|ref|ZP_03753512.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM
           16841]
 gi|225211937|gb|EEG94291.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM
           16841]
          Length = 358

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 48/201 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETAK 67
             ++V +SGG DS      L                 +  F + K         L   A 
Sbjct: 3   KKVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQDEDEFTQEKNGGCC---GLS--AV 57

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           ++ R V+D   RL I + V+++K    +                    A  R  ++  + 
Sbjct: 58  NDARRVAD---RLEIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETV------YMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           + +  I A  I T H    ++E +         S     ++   L  +  T L    +  
Sbjct: 115 DRSLAIGADYIATGHYA--RVEQLPNGRYAIKNSVTAEKDQTYALYNLTQTQLSRTLM-- 170

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P     +++IR    +  +
Sbjct: 171 --PVGDYHKDEIRQIAEEIGL 189


>gi|56460418|ref|YP_155699.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina loihiensis L2TR]
 gi|73920125|sp|Q5QYZ7|MNMA_IDILO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56179428|gb|AAV82150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Idiomarina loihiensis L2TR]
          Length = 371

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A D++  
Sbjct: 6   KKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDTDEYCAASDDLAD 57

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC  L I    +++                +  R               A +   A+
Sbjct: 58  AEKVCETLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 117

Query: 116 TINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            ++A  I T H       D + E   +R      ++   L  +    +         P  
Sbjct: 118 ALDADYIATGHYVRRQQRDGKWE--MLRGLDSNKDQSYFLYTLSHEHIAQT----LFPVG 171

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    ++ +
Sbjct: 172 ELEKPEVRRIAEEQGL 187


>gi|255659674|ref|ZP_05405083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mitsuokella multacida DSM 20544]
 gi|260848239|gb|EEX68246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mitsuokella multacida DSM 20544]
          Length = 366

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 55/206 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----------- 67
              ++VA+SGG DS      L     +         AI V   L E ++           
Sbjct: 3   KKKVVVAMSGGVDSSLTAALLKEQGYE---------AIGVTMRLSEESRDFDENDRGCCS 53

Query: 68  ----DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARYA 108
               D+ R V+++   + I H  +++K    +                    A    RY 
Sbjct: 54  LSSVDDARRVAEI---IGIPHYTMNFKEMFQEKVIDYFLADYAKGWTPNPCIACN--RYV 108

Query: 109 LISEH---AKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
                   A  + A  + T H      D+    V  +    + ++   L  +    L   
Sbjct: 109 KFEGLLQKAMELGADYVATGHYARIAQDESGRYVLKKGIDTHKDQSYALYHLNQQSLA-- 166

Query: 162 NLWISRPFLRCRREDIRSFLLQRNIS 187
                 P     + + R    +  + 
Sbjct: 167 --HFLMPLGDYTKVETREMAERYKLP 190


>gi|323490019|ref|ZP_08095240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planococcus donghaensis MPA1U2]
 gi|323396315|gb|EGA89140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Planococcus donghaensis MPA1U2]
          Length = 371

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 66/199 (33%), Gaps = 41/199 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS      L         +         +    +        A ++
Sbjct: 5   PQDTRVVVGMSGGVDSSVAAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYALISEH 113
              V  VC+++ I +  V+++           L    A R          E ++    EH
Sbjct: 57  YEDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A ++ A  + T H       +   ET  +R + +  ++   L+ +    L      +  P
Sbjct: 117 ALSLGADYLATGHYAQVEHAE-NGETKMLRGKDNNKDQTYFLNQLDQHQLSK----VMFP 171

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++ +R   L+  ++
Sbjct: 172 IGHMEKKKVREIALEAELA 190


>gi|312144175|ref|YP_003995621.1| GMP synthase, large subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904826|gb|ADQ15267.1| GMP synthase, large subunit [Halanaerobium sp. 'sapolanicus']
          Length = 512

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 29/189 (15%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V    ++  +SGG DS      +H  + D      + + I VDH  LR+    E 
Sbjct: 209 AIRKQVGKGKVICGLSGGVDSAVASAIVHKAIGD------QLTCIFVDHGLLRKG---EA 259

Query: 71  RYVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINAT 120
           + V         I    V  K          S+P+        E       E  K  N  
Sbjct: 260 KQVRRTFGEEFNIPLIYVDAKERFLDKLSGVSEPEAKRKIIGEEFIKVFDEEAEKLENVR 319

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRCRREDIR 178
            ++    + D +E+          EK   +        +  ++NL +  P     ++++R
Sbjct: 320 YLVQGTIYSDVIES-------GGTEKSATIKSHHNVGGLPDEMNLELVEPLHFLFKDEVR 372

Query: 179 SFLLQRNIS 187
                  + 
Sbjct: 373 KIGEVLGLP 381


>gi|19699031|gb|AAL91135.1| MG083-like protein [Mycoplasma gallisepticum]
          Length = 57

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              L+ VSGG DS+ LL        DR   +IK  A  +++  R TA  +   VSD C 
Sbjct: 6  KKQYLIGVSGGPDSIYLL--------DRYQDQIKV-ACHINYNKRPTALRDQLIVSDYCL 56

Query: 79 R 79
          +
Sbjct: 57 K 57


>gi|89896728|ref|YP_520215.1| hypothetical protein DSY3982 [Desulfitobacterium hafniense Y51]
 gi|89336176|dbj|BAE85771.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 267

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 49/186 (26%), Gaps = 47/186 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETA-KDEVRYVSD 75
           ++VA SGG DS  LL   H  L               DHCL      ET    +      
Sbjct: 18  VVVAFSGGVDSTFLLKVAHETLG--------------DHCLAVIGASETMPSADYNNALQ 63

Query: 76  VCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
                     V+  +    +             +   +  +   A+      ++     D
Sbjct: 64  QAKEFGAKFLVIETEEMGKEEFVKNPQNRCFHCKNELFTKLLGIAQEKKINWVLDGSNAD 123

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
           D                   L      +     L I  P       +E+IR    +  +S
Sbjct: 124 D-------------------LKDYRPGMQAARALGIRSPLQEAGLSKEEIRQLSKKMGLS 164

Query: 188 WCEDPS 193
             + PS
Sbjct: 165 TWDKPS 170


>gi|315169506|gb|EFU13523.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX1342]
          Length = 283

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 84/279 (30%), Gaps = 72/279 (25%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            VR L     + VA SGG DS  LL  AL ++ ++         A+ V+  L   + DE 
Sbjct: 11  LVRELQKMDKLAVAYSGGIDSSYLLKKALDTLGAE------NVLAVVVNSEL--FSDDEF 62

Query: 71  RYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               D+ + L            +      + P +   +   +  Y  I    +     ++
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIVANNPNSWFYSK--KLLYKTIRSAIQKEGFDVL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSF 180
                 DD   T +    R   ++G                 +  P    +  + +IR  
Sbjct: 121 ADGMIMDDN--TDFRPGLRARDQEG-----------------VISPLQQAKLYKIEIRQL 161

Query: 181 LLQRNISWC----------------------EDPSNTDDRFER------VRVR--RFVRD 210
                IS                         D     +++ R      VRVR    +  
Sbjct: 162 AKDAGISNWSKVASCSIASRIPYGIKLTRSAIDQVFASEKYLREIGFPIVRVRAHHDLAR 221

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           I++     K+    + R K+ + +      Y+T  +   
Sbjct: 222 IEIPE--DKLSLLLENREKIADYLKKQGFNYVTFDLEGF 258


>gi|224475544|ref|YP_002633150.1| GMP synthase [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254800115|sp|B9DLM7|GUAA_STACT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222420151|emb|CAL26965.1| putative GMP synthase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 513

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IREQVGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVNAKDRFMDKLKGVSDPEQKRKIIGNEFVYVFDDEASKLEGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMQFELIEPINTLFKDEVRALG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|149175320|ref|ZP_01853942.1| GMP synthase [Planctomyces maris DSM 8797]
 gi|148845929|gb|EDL60270.1| GMP synthase [Planctomyces maris DSM 8797]
          Length = 532

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 29/198 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    ++  +SGG DS  +   L+  +        + S I VD+  L
Sbjct: 219 NLIEQEIETIRKRVGDKQVICGLSGGVDSSVVAALLYRAI------GSQLSCIFVDNGLL 272

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R+   DEV +        +    VV  ++         + PQ       R        E 
Sbjct: 273 RKGEADEVEH--RFGEHFKTDLHVVDARDLFLSELAGVTDPQEKRKIIGRLFIEVFQKEA 330

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPF 169
           A   NA  +     + D +E+            G             +   L   +  P 
Sbjct: 331 ASIENAKFLAQGTLYPDVIES-------GANPDGPAATIKSHHNVGGLPEKLGFELIEPL 383

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 384 RELFKDEVRQMGHELGLP 401


>gi|222055075|ref|YP_002537437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. FRC-32]
 gi|221564364|gb|ACM20336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. FRC-32]
          Length = 370

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 60/203 (29%), Gaps = 38/203 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---------- 67
               +++A+SGG DS      L           I       D+     A+          
Sbjct: 6   SKKRVVIAMSGGVDSSVSAALLQE--QGFEVIGISMQVW--DYGKFAAAEGEKFDTCCSL 61

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAAREA-RYALIS 111
           D++     V  +L I   VV++++                           +  ++ L+ 
Sbjct: 62  DDIHDARRVAEQLGIPFYVVNFEDEFEDLVIKDFVDEYLKGRTPNPCVRCNQWIKFELLL 121

Query: 112 EHAKTINATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           + A+ + A  I T H      DD   T      +   +       +       L + +  
Sbjct: 122 KKARGLGADFIATGHYARTLRDD---TGRFHLLKGVDQTKDQSYFLFTLTQEQLAMTLF- 177

Query: 168 PFLRCRREDIRSFLLQRNISWCE 190
           P     +  +R+   + N+   E
Sbjct: 178 PLGEMTKTQVRALAARYNLRVAE 200


>gi|118594656|ref|ZP_01552003.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Methylophilales bacterium HTCC2181]
 gi|118440434|gb|EAV47061.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Methylophilales bacterium HTCC2181]
          Length = 521

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E+    ++S+V    +++ +SGG DS      +H  +        + + I VDH  LR 
Sbjct: 210 VETAVNHIKSIVGDDEVILGLSGGVDSSVAAALIHRAI------GAQLTCIFVDHGMLRL 263

Query: 65  TAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHA 114
               E   V       L +    V   +         S P+       R+          
Sbjct: 264 N---EAEIVMETFKKNLGVKVIHVDATDKFMSDLVGISDPEEKRKIIGRDFVEVFQEHAE 320

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K      +     + D +E+      +      +        +   LNL +  P     +
Sbjct: 321 KFHQVKWLAQGTIYPDVIES---AGGKTKKAHNIKSHHNVGGLPETLNLQLLEPLRELFK 377

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 378 DEVRELGVALGLP 390


>gi|325851988|ref|ZP_08171071.1| protein ExsB [Prevotella denticola CRIS 18C-A]
 gi|325484544|gb|EGC87460.1| protein ExsB [Prevotella denticola CRIS 18C-A]
          Length = 218

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 53/193 (27%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL      ++          A+S D+  +     E+ + +  C +L I H 
Sbjct: 8   VSGGLDSITLLYDKAETIAL---------AVSFDYG-QNHGAKELPFAAHHCRKLGIPHI 57

Query: 86  VV--SWKNSKPQTGLMAAAR---EARY------------------ALISEHAKTINATLI 122
            +  S+ +   ++ L+  A    E  Y                  A+ +  A++     +
Sbjct: 58  TIPLSFMHRYFKSSLLDGAEAIPEGHYAEENMKSTVVPFRNGIMLAIATGIAESHGLKRV 117

Query: 123 MTAHTFDDQLETV-------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             A+   D   T+       ++++    A  G  +           N+ I  P+    + 
Sbjct: 118 YIANHGGDH--TIYPDCRPDFIQAMDGAATAGTFI-----------NVRIEAPYTNITKA 164

Query: 176 DIRSFLLQRNISW 188
           DI        + +
Sbjct: 165 DIVRRGTALGVDY 177


>gi|226330495|ref|ZP_03806013.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198]
 gi|225201290|gb|EEG83644.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198]
          Length = 367

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNW----------EEDDDTEYCSASTDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 57  ADAQAVCDKLGIELYTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|170754234|ref|YP_001779731.1| hypothetical protein CLD_0682 [Clostridium botulinum B1 str. Okra]
 gi|169119446|gb|ACA43282.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum B1
           str. Okra]
 gi|322804375|emb|CBZ01925.1| ATP-utilizing enzyme of the PP-loop superfamily [Clostridium
           botulinum H04402 065]
          Length = 268

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           + VA SGG DS  LL A    L D +   I  + +               R   ++  ++
Sbjct: 20  VAVAFSGGVDSTLLLKAAKEALGDNA---ISITIV------SPYIPKWEIREARELVDKI 70

Query: 81  RIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDD 130
            I    V     +  ++         + ++ ++    A+      I+     DD
Sbjct: 71  GIKSYFVEVPMLEEIRSNPEDRCYICKKSVFNKIKDLAREKGIKYIVDGTNADD 124


>gi|170743223|ref|YP_001771878.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium sp. 4-46]
 gi|205816883|sp|B0UIW7|MNMA_METS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168197497|gb|ACA19444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacterium sp. 4-46]
          Length = 382

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 46/215 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++VA+SGG DS  +   L     D     ++      DH     R     A  ++
Sbjct: 10  PQDTRVVVAMSGGVDSSVVAGLLRRQGYDVVGITLQLY----DHGAATHRRGACCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
                    L I H V+ +++   +  +   A                R  ++  +   A
Sbjct: 66  HDARRAAETLGIPHYVLDYEDRFREAVIDRFAESYIHGETPIPCVECNRSIKFRDLLATA 125

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---------DLNLWI 165
             + A  + T H            + R     G  L    D                L +
Sbjct: 126 LDLGADALATGHYV----------ASRARPGGGRALYRALDPARDQSYFLYATTPEQLDV 175

Query: 166 SR-PFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            R P     +++ R    +  ++  + P + D  F
Sbjct: 176 LRFPLGELPKDETRRLAREFGLAVADKPDSQDICF 210


>gi|330838778|ref|YP_004413358.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC
           35185]
 gi|329746542|gb|AEB99898.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC
           35185]
          Length = 352

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 47/199 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD---------E 69
              + VA+SGG DS        ++L ++ +  +  +       L + +++         +
Sbjct: 2   KKKVAVAMSGGVDS----SLCAALLQEQGYEVLGITM-----QLSDDSREMNGVSSAATD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEH 113
            R V+D    L I H V  ++                +           R  ++  +   
Sbjct: 53  ARRVADF---LGIEHVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSF 109

Query: 114 AKTINATLIMTAHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           AK   A  + T H    ++E     +  ++  RD  +     S +   +  ++   I  P
Sbjct: 110 AKEKGADFLATGHYV--RVEKEEDGSFSLKKGRDEKKDQ---SYVLYRLPREILSHILFP 164

Query: 169 FLRCRREDIRSFLLQRNIS 187
               R+E+ R+   + ++ 
Sbjct: 165 LGSYRKEETRALAQKLSLP 183


>gi|257876105|ref|ZP_05655758.1| GMP synthase [Enterococcus casseliflavus EC20]
 gi|257810271|gb|EEV39091.1| GMP synthase [Enterococcus casseliflavus EC20]
          Length = 521

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 217 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 267

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 268 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGEEG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 328 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|257870487|ref|ZP_05650140.1| GMP synthase [Enterococcus gallinarum EG2]
 gi|257804651|gb|EEV33473.1| GMP synthase [Enterococcus gallinarum EG2]
          Length = 521

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 217 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 267

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 268 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGEEG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 328 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|257866501|ref|ZP_05646154.1| GMP synthase [Enterococcus casseliflavus EC30]
 gi|257872983|ref|ZP_05652636.1| GMP synthase [Enterococcus casseliflavus EC10]
 gi|257800459|gb|EEV29487.1| GMP synthase [Enterococcus casseliflavus EC30]
 gi|257807147|gb|EEV35969.1| GMP synthase [Enterococcus casseliflavus EC10]
          Length = 521

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 217 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 267

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 268 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGEEG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 328 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|320103478|ref|YP_004179069.1| asparagine synthase [Isosphaera pallida ATCC 43644]
 gi|319750760|gb|ADV62520.1| asparagine synthase [Isosphaera pallida ATCC 43644]
          Length = 296

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 37/180 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCS 78
             + VA SGG DS  +  A H  L +R+   +  +A+       ++ A  E+    ++  
Sbjct: 26  GTVGVAYSGGIDSTVVAQAAHLALGERA---VAITAV------SDSLASGELEEAVELAK 76

Query: 79  RLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           R+ + H V+  +        +  +      +   Y  ++   + +    I++    DD  
Sbjct: 77  RIGVRHRVIRTEEFADPNYLRNHSDRCYFCKSELYGRLTALREELGVETIVSGANLDD-- 134

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCE 190
                       +   GL    +         I  P       + D+R+      +   +
Sbjct: 135 ----------MGDHRPGLIAAAEN-------GIRHPLQECGLTKADVRALAKAWGLPTWD 177


>gi|301301394|ref|ZP_07207534.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300850999|gb|EFK78743.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 518

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  + +      + ++I VDH  LR+    E  
Sbjct: 217 IRETVGDKKVLLGLSGGVDSSVVGVLLHKAIGN------QLTSIFVDHGLLRKG---EAE 267

Query: 72  YVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D +  +  +    V  K          S P+        E       E AK      
Sbjct: 268 QVMDSLGGKFGLNIIKVDAKERFLNKLAGVSDPEKKRKIIGNEFIRVFDDEAAKLEGIEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 328 LAQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDVQFKLIEPLNTLFKDEVRELG 381

Query: 182 LQRNISW 188
            +  +  
Sbjct: 382 EKLGMPH 388


>gi|168182287|ref|ZP_02616951.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Bf]
 gi|237793422|ref|YP_002860974.1| hypothetical protein CLJ_B0142 [Clostridium botulinum Ba4 str. 657]
 gi|182674652|gb|EDT86613.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Bf]
 gi|229263939|gb|ACQ54972.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Ba4
           str. 657]
          Length = 268

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 14/129 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +     ++ L     + VA SGG DS  LL A    L D     I  + +          
Sbjct: 5   DKYNNLIKYLKDLKSVAVAFSGGVDSTLLLKAAKEALGD---NVISITVV------SPYI 55

Query: 67  KDEV-RYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATL 121
                +   ++  ++ I    +     +  ++         + ++ ++    A+      
Sbjct: 56  PKWEIKEARELVDKIGIKSYFIEVPMLEEIRSNPEDRCYICKKSVFNKIKDLAREKGIKY 115

Query: 122 IMTAHTFDD 130
           I+     DD
Sbjct: 116 IVDGTNADD 124


>gi|170591100|ref|XP_001900309.1| GMP synthase [Brugia malayi]
 gi|158592459|gb|EDP31059.1| GMP synthase, putative [Brugia malayi]
          Length = 786

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           +RS+V    +LV VSGG DS      LH  L     G  +  AI +D+       +    
Sbjct: 321 IRSVVVDKKVLVMVSGGVDSTVCAALLHKAL-----GSDRVIAIHIDNGFMRSNESDQ-- 373

Query: 71  RYVSDVCSRLRIA 83
             V D+ + L + 
Sbjct: 374 --VVDLLNELNLK 384


>gi|313206777|ref|YP_004045954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Riemerella anatipestifer DSM 15868]
 gi|312446093|gb|ADQ82448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Riemerella anatipestifer DSM 15868]
 gi|315023849|gb|EFT36851.1| tRNA-specific 2-thiouridylase MnmA [Riemerella anatipestifer RA-YM]
 gi|325335784|gb|ADZ12058.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Riemerella anatipestifer RA-GD]
          Length = 395

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 59/199 (29%), Gaps = 45/199 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS      L     +      R++     +            +DE  ++ 
Sbjct: 2   KVVVGLSGGVDSSVAAYLLQQQGHEVIGLFMRNWNDASVTL-----------EDECPWIE 50

Query: 75  D------VCSRLRIAHSVVS----WKNSKPQTGLMAAA------------REARYALISE 112
           D      V  +L I   V+     +K                        RE ++ +  +
Sbjct: 51  DSNDALLVAQKLGIPFQVIDMSELYKERIVDYMFEEYEKGRTPNPDVLCNREVKFDVFMK 110

Query: 113 HAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            A ++ A  + T H     T +D+  T                  +C      L+  +  
Sbjct: 111 TALSLGADKVATGHYARLSTTEDENGTTTYHLLAGKDHNKDQSYFLCQLNQEQLSKALF- 169

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + ++R    +  +
Sbjct: 170 PIGELTKPEVREIAKEIGL 188


>gi|46200029|ref|YP_005696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus thermophilus HB27]
 gi|55980227|ref|YP_143524.1| tRNA-specific 2-thiouridylase MnmA [Thermus thermophilus HB8]
 gi|81405338|sp|Q72GX1|MNMA_THET2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81600559|sp|Q5SLN5|MNMA_THET8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46197656|gb|AAS82069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus thermophilus HB27]
 gi|55771640|dbj|BAD70081.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermus thermophilus HB8]
          Length = 367

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 59/202 (29%), Gaps = 48/202 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD---------RSFGKIKFSA---------ISVDHC 61
             +LVA+SGG DS    + L     +                  A          +    
Sbjct: 2   KRVLVAMSGGVDSSVAALLLKEAGYEVVGAMMRFWPDLPPPSLEAGKPRAWESCCT---- 57

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAARE----AR----- 106
               A  E R V+D   RL I   ++ ++    +  +       A  R     AR     
Sbjct: 58  --PDAAYEARRVAD---RLGIPFYLLDYREVFEEEIISPFLQDYAQGRTPNPCARCNTFV 112

Query: 107 -YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            +  + + A+ +    + T H    + E   +   R           +  T   +    +
Sbjct: 113 KFGALLKQARRLGLDYVATGHYV--RKEG--LALLRGLDPHKDQTYFLWGT-PKEALPHL 167

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     + ++R+   +  + 
Sbjct: 168 LFPVGGLTKPEVRALAEKAGLP 189


>gi|158425974|ref|YP_001527266.1| tRNA-specific 2-thiouridylase MnmA [Azorhizobium caulinodans ORS
           571]
 gi|172047846|sp|A8HVS0|MNMA_AZOC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158332863|dbj|BAF90348.1| TRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Azorhizobium caulinodans ORS 571]
          Length = 390

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 54/215 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSV----------LSDRSFGKIKFSAISVDHCLRETAKDEV 70
            ++VA+SGG DS  +   L             L D+     +  A          A  ++
Sbjct: 16  RVVVAMSGGVDSSVVAGLLARAGFDVVGVTLQLYDQGEAARRKGACC--------AGQDI 67

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
               DV  RL I H V+ +++   +  +   A                R  ++  +   A
Sbjct: 68  YDARDVADRLGIPHYVLDYESRFREEVIERFADSYAAGFTPIPCVDCNRTVKFRDLLATA 127

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLW 164
           + + A+++ T H            + R   +   GL    +                   
Sbjct: 128 EDLGASVLATGHYV----------ASRALPDGRRGLFRAAEENRDQSYFLYATTQAQATK 177

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +  P    R+ D+R+   +  +   + P + D  F
Sbjct: 178 LRFPLGGMRKSDVRALAAELGLPVADKPDSQDICF 212


>gi|146296983|ref|YP_001180754.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|259647688|sp|A4XKX8|GUAA_CALS8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145410559|gb|ABP67563.1| GMP synthase (glutamine-hydrolyzing) [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 511

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 70/205 (34%), Gaps = 45/205 (21%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +R +V    ++ A+SGG DS    + +H  +            I VDH  L
Sbjct: 200 SFIEERINEIRKIVGNQKVVCALSGGVDSSVAAVLVHKAIGK------NLFCIFVDHGLL 253

Query: 63  RETAKDE-------------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR 103
           R+   +E                    R++  +C        V+  +  +   G      
Sbjct: 254 RKGEAEEVIKTFKGQFDMNVIKVDAKERFLKALC-------GVIDPERKRKIIGEEFI-- 304

Query: 104 EARYALISEHAKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
                +  E A  +     +   T   D +E+   ++    +   +G  G+ + I ++  
Sbjct: 305 ----RVFEEEASKLGDVKFLVQGTIYPDVVESGVGKAATIKSHHNVG--GLPEHIKFER- 357

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             I  P     ++++R   ++  I 
Sbjct: 358 --IIEPLRELFKDEVRRVGVELGIP 380


>gi|255593058|ref|XP_002535783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
 gi|223521982|gb|EEF26602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
          Length = 156

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 31/129 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +F   +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  V+++            A  R  R             +    ++A T+
Sbjct: 60  AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119

Query: 118 NATLIMTAH 126
            A  + T H
Sbjct: 120 GADYVATGH 128


>gi|242013853|ref|XP_002427615.1| GMP synthase, putative [Pediculus humanus corporis]
 gi|212512030|gb|EEB14877.1| GMP synthase, putative [Pediculus humanus corporis]
          Length = 685

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++ +V    +L+ VSGG DS      LH  L        +  A+ +D+   R+    E  
Sbjct: 223 IKEIVGNNKVLLLVSGGVDSTVCAALLHKALR-----PDQVIAVHIDNGFMRKN---ESA 274

Query: 72  YVSDVCSRLRIAHSVVS 88
            V +   RL +   VV+
Sbjct: 275 LVEESLQRLGLKLKVVN 291


>gi|146344277|ref|YP_001202133.1| hypothetical protein pQBR0387 [Pseudomonas fluorescens SBW25]
 gi|146188089|emb|CAM96419.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 387

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR---YVSDVCS 78
          + V VSGG DS+  LIA+H  L    F   +  A+  D      + +  +      +V  
Sbjct: 23 VAVGVSGGKDSVACLIAVHRYLDSIGFEGPRC-AVHADLG----SVEWEQSLIKCQEVAD 77

Query: 79 RLRIAHSVVSWKNSK 93
          +L     VV      
Sbjct: 78 KLGWRLEVVQRPAGG 92


>gi|309782108|ref|ZP_07676838.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia sp. 5_7_47FAA]
 gi|308919174|gb|EFP64841.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia sp. 5_7_47FAA]
          Length = 539

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 27/200 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I+     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIDEAVKAIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  -LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYA 108
            LR    DE + V D    RL     VV    S+   G +A             RE    
Sbjct: 259 LLR---LDEGKMVMDMFAGRLH--AKVVHVDASEQFLGHLAGVTDPEAKRKIIGREFVEV 313

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             +E  K  NA  +     + D +E+      +      +        +   L L +  P
Sbjct: 314 FQAEAKKLSNAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEP 370

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R   +   +  
Sbjct: 371 LRDLFKDEVRELGVALGLPH 390


>gi|262306113|gb|ACY45649.1| gln amidotransferase [Streptocephalus seali]
          Length = 197

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ LV    +LV VSGG DS      L      R+    +  AI +D+  LR+    EV 
Sbjct: 37  IKKLVGNQKVLVLVSGGVDSTVCAALL-----TRALNPDQLIAIHIDNGFLRKG---EVT 88

Query: 72  YVSDVCSRLRIAHSVVS 88
            V    +RL +   V+ 
Sbjct: 89  QVEKNLTRLGLKLKVIR 105


>gi|254445125|ref|ZP_05058601.1| exsB protein [Verrucomicrobiae bacterium DG1235]
 gi|198259433|gb|EDY83741.1| exsB protein [Verrucomicrobiae bacterium DG1235]
          Length = 243

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 51/196 (26%)

Query: 23  LVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
            VAV SGG DS  +L  +  +            A+SV++  ++ +K E+   ++ C  L 
Sbjct: 12  AVAVYSGGMDSTVMLYRMRELGIAIK------GALSVNYG-QKHSK-ELDAAAEFCRALG 63

Query: 82  IAHSVVSWKNSK---PQTGLMAAAREA---RYA------------------LISEHAKTI 117
           I H V      +    ++ L ++A E     Y                   + +  A ++
Sbjct: 64  IEHRVADLSGLQGIFGKSSLTSSAEEVPEGHYEEEQMKSTVVPNRNMILLSVATSWAISL 123

Query: 118 NATLIMTAHTFDDQL------ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  +  A    D        E           +K + L    +  LY       RPF+ 
Sbjct: 124 GAEAVAYAAHGGDHAIYPDCREEFAEAL-----DKAIRLCDWSEVSLY-------RPFVT 171

Query: 172 CRREDIRSFLLQRNIS 187
             + DI     +  + 
Sbjct: 172 WTKADIAKAGAKLGVK 187


>gi|196034345|ref|ZP_03101754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus W]
 gi|195992887|gb|EDX56846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus W]
          Length = 372

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 4   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 55

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 56  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 115

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 116 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 170

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 171 PLGELKKPQIREMAKKAGLA 190


>gi|127512489|ref|YP_001093686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella loihica PV-4]
 gi|166235081|sp|A3QD79|MNMA_SHELP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126637784|gb|ABO23427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella loihica PV-4]
          Length = 371

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 39/197 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDE 69
                ++V +SGG DS      L           +K           E        A ++
Sbjct: 8   PNGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDTDEYCAAAED 59

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISE 112
           ++    VC +L I    V++             A  +  R               A +  
Sbjct: 60  LKDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEF 119

Query: 113 HAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               ++A  I   H     D   ++  +R      ++   L  +    +         P 
Sbjct: 120 ADDILDADYIAMGHYVRRSDASGQSQMLRGVDGNKDQSYFLYTLSHEQIARS----LFPV 175

Query: 170 LRCRREDIRSFLLQRNI 186
               + ++R    +  +
Sbjct: 176 GELEKSEVREIAKEMGL 192


>gi|310640301|ref|YP_003945059.1| gmp synthase pp-atpase domain/subunit-like protein [Paenibacillus
           polymyxa SC2]
 gi|309245251|gb|ADO54818.1| GMP synthase PP-ATPase domain/subunit-like protein [Paenibacillus
           polymyxa SC2]
          Length = 512

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 25/191 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E +R  +R  V    +L A+SGG DS  + + +H  + D      + + + +DH  LR+ 
Sbjct: 206 EQIRE-IRQQVGDKKVLCALSGGVDSSVVAMLIHRAIGD------QLTCMFIDHGLLRKG 258

Query: 66  AKDE--VRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKT 116
             +     +V      +++       +          P+        E  Y    E AK 
Sbjct: 259 EAESVMETFVGKF--DMKVVKIDARERFLSKLAGVDDPEQKRKIIGNEFIYVFEEESAKF 316

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 317 DDFDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMKFKLIEPLNALFKDE 370

Query: 177 IRSFLLQRNIS 187
           +R    +  + 
Sbjct: 371 VRKVGEECGLP 381


>gi|300932931|ref|ZP_07148187.1| GMP synthase [Corynebacterium resistens DSM 45100]
          Length = 530

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE VR     +      +  +SGG DS     A+ + L  R+ G  + + + VDH  LR+
Sbjct: 216 IEQVR---EQVGPEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRQ 266

Query: 65  TAKDEVR--YVSDVCSRLRIAHS----------VVSWKNSKPQTGLMAAAREARY--ALI 110
             +++V   +V+   ++L  AH           V   +  +   G        R    ++
Sbjct: 267 GEREQVEKDFVAATGAKLVTAHEKDAFLKKLAGVTEPEAKRKAIGAEFIRSFERAVTEVL 326

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
               +      ++    + D +E+             +        +  D+   +  P  
Sbjct: 327 ESAPEGSTVDYLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFELVEPLR 381

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 382 LLFKDEVRAVGRELGLP 398


>gi|295690747|ref|YP_003594440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter segnis ATCC 21756]
 gi|295432650|gb|ADG11822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter segnis ATCC 21756]
          Length = 409

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 27/148 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +    +E  R  V  L     I+ A+SGG DS      L     D     ++      DH
Sbjct: 20  LIARAVEQARAAV-GLPEGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLY----DH 74

Query: 61  CL---RET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---------- 104
                R+    A  ++        R+ I H V+ +++   +  +   A            
Sbjct: 75  GAAISRKGACCAGQDILDARMAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPC 134

Query: 105 ------ARYALISEHAKTINATLIMTAH 126
                  ++  + + A+ + A  + T H
Sbjct: 135 VRCNQTVKFRDLLDVARDLGAEAMATGH 162


>gi|148273738|ref|YP_001223299.1| GMP synthase [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147831668|emb|CAN02637.1| GMP synthase [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
          Length = 526

 Score = 51.4 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 62/195 (31%), Gaps = 35/195 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKD-E 69
           +R+ V  A ++  +SGG DS      +H  + D      + + + VDH L   +  +  E
Sbjct: 215 IRAQVGDAKVICGLSGGVDSAVAAAIVHRAVGD------QLTCVFVDHGLLRHDERRQVE 268

Query: 70  VRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAARE--------ARYALISE 112
             YV+       +    V   +           P+       RE        A   ++  
Sbjct: 269 EDYVAAT----GVRLVTVDAADQFLDGLTGVTDPEAKRKIIGREFIRSFEGAAEALVLEA 324

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A       ++    + D +E+             +        +  DL   +  P    
Sbjct: 325 KADGEPIRFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLKFELVEPLRTL 379

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  + 
Sbjct: 380 FKDEVRAIGRELGLP 394


>gi|222082947|ref|YP_002542312.1| succinoglycan biosynthesis transcriptional regulator protein
          [Agrobacterium radiobacter K84]
 gi|254764294|sp|B9JLH9|QUEC_AGRRK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|221727626|gb|ACM30715.1| succinoglycan biosynthesis transcriptional regulator protein
          [Agrobacterium radiobacter K84]
          Length = 236

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I+V  SGG DS+ L    H V +++         +S D+  R   + E+ + +    RL 
Sbjct: 4  IVV-CSGGLDSVSLA---HKVAAEQQL----IGLVSFDYGQRH--RKELDFAAACAKRLG 53

Query: 82 IAHSVVSWKNSKPQ 95
          + H ++        
Sbjct: 54 VPHEIIDITTIGKH 67


>gi|295689966|ref|YP_003593659.1| GMP synthase large subunit [Caulobacter segnis ATCC 21756]
 gi|295431869|gb|ADG11041.1| GMP synthase, large subunit [Caulobacter segnis ATCC 21756]
          Length = 520

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VD   LR+    E  
Sbjct: 216 IRDQVGTGKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDTGLLRKN---EAE 266

Query: 72  YVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      I    V   +         S P+T      R        E AK   A  
Sbjct: 267 QVVTLFRDHYNIPLVHVDAGDLFLGELAGVSDPETKRKTIGRLFIDVFDKEAAKIDGAQF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S R      +        +   + L +  P     ++++R+  
Sbjct: 327 LAQGTLYPDVVESV---SARGGPSAVIKSHHNVGGLPDYMKLKLVEPLRELFKDEVRALG 383

Query: 182 LQRNISW 188
           ++  ++ 
Sbjct: 384 VELGLAP 390


>gi|290958063|ref|YP_003489245.1| GMP synthase [Streptomyces scabiei 87.22]
 gi|260647589|emb|CBG70694.1| GMP synthase [Streptomyces scabiei 87.22]
          Length = 526

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 24/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R LV     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 209 NVIEEQVEAIRELVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 262

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   +  +          R+          +   A 
Sbjct: 263 RKNETEQVEKDFVAATGVQLKVVDAEERFLKALAGVSDPEQKRKIIGREFIRVFEQAQAE 322

Query: 121 LIMTAHTFDDQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFL 170
           +I      D+  E       T+Y          G            +  DL   +  P  
Sbjct: 323 IIA-----DEGPEVAFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFKLIEPLR 377

Query: 171 RCRREDIRSFLLQRNIS 187
           +  ++++R    +  + 
Sbjct: 378 KLFKDEVRMVGQELGLP 394


>gi|154151662|ref|YP_001405280.1| PP-loop domain-containing protein [Candidatus Methanoregula boonei
           6A8]
 gi|154000214|gb|ABS56637.1| PP-loop domain protein [Methanoregula boonei 6A8]
          Length = 278

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 35/199 (17%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E  +     +V    +LVA SGG DS  L +    VL +RS   +  S +      
Sbjct: 1   MSTDERRQRLCDQIVGRGSMLVAFSGGVDSSLLAVLAQKVLGERSRCVLLDSPVV----- 55

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKT 116
              A +E R    +  + ++   ++  K    +      A    +      A++   A+ 
Sbjct: 56  PREAIEEARL---IAQKYQLDLEILPVKVMDDERFTKNPAERCYWCKKNSAAVLKWRARE 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRR 174
           +    +       D  E                       ++      +  PFL     +
Sbjct: 113 LGFACVADGINVSDTGE-------------------HRPGLVASTEEGVVHPFLEAGISK 153

Query: 175 EDIRSFLLQRNISWCEDPS 193
            +IR       + + + PS
Sbjct: 154 NEIREIARNEGMVFWDKPS 172


>gi|241662973|ref|YP_002981333.1| GMP synthase [Ralstonia pickettii 12D]
 gi|240865000|gb|ACS62661.1| GMP synthase, large subunit [Ralstonia pickettii 12D]
          Length = 539

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 27/200 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVKRIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  -LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYA 108
            LR    DE + V D    RL     VV    S+   G +A             RE    
Sbjct: 259 LLR---LDEGKMVMDMFAGRLH--AKVVHVDASEQFLGHLAGVTDPEAKRKIIGREFVEV 313

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             +E  K  NA  +     + D +E+      +      +        +   L L +  P
Sbjct: 314 FQAEAKKLSNAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEP 370

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R   +   +  
Sbjct: 371 LRDLFKDEVRELGVALGLPH 390


>gi|300741998|ref|ZP_07072019.1| GMP synthase (Glutamine amidotransferase) [Rothia dentocariosa
           M567]
 gi|300381183|gb|EFJ77745.1| GMP synthase (Glutamine amidotransferase) [Rothia dentocariosa
           M567]
          Length = 530

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS      +H  + D      + +   +DH  LR   +++V 
Sbjct: 219 IREQVGEDRVICALSGGVDSSVAAALVHKAVGD------QLTCFFIDHGLLRAGEREQVE 272

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL------ISEHAKT 116
              D  + + I    +             S+P+       RE   +       + E A  
Sbjct: 273 --QDYAASMGIRVITIDESERFLTALAGVSEPEQKRKIIGREFIRSFEQAERKLIEEAGE 330

Query: 117 INAT--LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             A    ++    + D +E+             +        +  DL   +  P     +
Sbjct: 331 EGAQIKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLAFELVEPLRTLFK 385

Query: 175 EDIRSFLLQRNIS 187
           +++R+   Q  + 
Sbjct: 386 DEVRAIGRQLGVP 398


>gi|258514039|ref|YP_003190261.1| GMP synthase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777744|gb|ACV61638.1| GMP synthase, large subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 510

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    V   V    +L A+SGG DS    + +H  + D      + + + VDH  L
Sbjct: 200 SFLETEVAEVHKTVGNRQVLCALSGGVDSSVAAVLVHRAIGD------QLTCVFVDHGLL 253

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V S    +  I    V  +          + P+        E       E
Sbjct: 254 RKG---EAEQVISTFRDKFHINLIAVDAEERFLSRLQGVTDPERKRKIIGEEFIRVFEEE 310

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      ++    + D +E              +        +  D+ L +  P    
Sbjct: 311 AAKLGQIDYLVQGTLYPDVVE------SGTATAAVIKSHHNVGGLPEDMKLKLIEPLRWL 364

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 365 FKDEVRVLGEELGIP 379


>gi|154496654|ref|ZP_02035350.1| hypothetical protein BACCAP_00946 [Bacteroides capillosus ATCC
          29799]
 gi|150273906|gb|EDN01006.1| hypothetical protein BACCAP_00946 [Bacteroides capillosus ATCC
          29799]
          Length = 168

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
          +++ V    +L+A+SGG DS  +   L   +        +   + V+H L
Sbjct: 30 IQAQVGDKKVLLALSGGVDSSVVAALLIKAIGK------QLVCVHVNHGL 73


>gi|73541543|ref|YP_296063.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ralstonia eutropha JMP134]
 gi|91206824|sp|Q470G4|GUAA_RALEJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|72118956|gb|AAZ61219.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia eutropha JMP134]
          Length = 539

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 67/200 (33%), Gaps = 27/200 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MKDHIEEAVALIRKQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  -LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYA 108
            LR    DE + V D    RL     VV    S+   G +A             RE    
Sbjct: 259 LLR---LDEGKMVMDMFAGRLH--AKVVHIDASEQFLGHLAGVTDPEQKRKIIGREFVEV 313

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             +E  K  NA  +     + D +E+      +      +        +   L L +  P
Sbjct: 314 FQAEAKKLSNAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEP 370

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R   +   +  
Sbjct: 371 LRDLFKDEVRQLGVALGLPP 390


>gi|152976810|ref|YP_001376327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189036217|sp|A7GT74|MNMA_BACCN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152025562|gb|ABS23332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 371

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 3   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 54

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 55  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 114

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 115 EHAMALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLGQEQLSKTMF---- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 170 PLGELKKPQIREMAKEAGLA 189


>gi|307189324|gb|EFN73755.1| GMP synthase [glutamine-hydrolyzing] [Camponotus floridanus]
          Length = 732

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R+ V    +L+ VSGG DS      L      ++  K +  A+ +++   R+    E 
Sbjct: 231 YIRNTVGDKKVLLLVSGGVDSTVCAALL-----QKALNKEQVIALHINNGFMRKG---ET 282

Query: 71  RYVSDVCSRLRIAHSVVS 88
           ++V    ++L +   VV+
Sbjct: 283 QFVEQCLAQLCVTLRVVN 300


>gi|294790765|ref|ZP_06755923.1| GMP synthase (Glutamine amidotransferase) [Scardovia inopinata
           F0304]
 gi|294458662|gb|EFG27015.1| GMP synthase (Glutamine amidotransferase) [Scardovia inopinata
           F0304]
          Length = 520

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 62/191 (32%), Gaps = 27/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +RS V    ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IRSQVGDKRVICGLSGGVDSAVAAALVHKAVGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNSKPQT--GLMAAAREARY--ALISEHAKTINATLIMTAH 126
            V  D      I    V           G+    R+ +          +     ++  AH
Sbjct: 260 QVKHDFVQATGIKLVTVDASEEFLSALDGVTEPERKRKIIGEKFIRTFEKATRQIVADAH 319

Query: 127 TFDDQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRRED 176
             D+  E       T+Y          G            +  DL+  +  P     +++
Sbjct: 320 --DEGGEIKFLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPEDLDFELIEPLRTLFKDE 377

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 378 VRAIGTKLGLP 388


>gi|241767515|ref|ZP_04765194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax delafieldii 2AN]
 gi|241361655|gb|EER58004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax delafieldii 2AN]
          Length = 310

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 47/198 (23%), Gaps = 38/198 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV--- 73
                ++V +SGG DS      L     +     +K               D+  Y    
Sbjct: 4   PTKQRVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNW----------EDDDDSEYCSSN 53

Query: 74  ------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALIS 111
                 + V   + I    V++             RE +                     
Sbjct: 54  IDFVDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFL 113

Query: 112 EHAKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +HA  + A  I T H         T      +           +       L+  +  P 
Sbjct: 114 DHAMRLGAEKIATGHYARVRQNAATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLF-PV 172

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R    +  + 
Sbjct: 173 GELHKAEVRRIAAEIGLP 190


>gi|229098868|ref|ZP_04229804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-29]
 gi|229105030|ref|ZP_04235684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-28]
 gi|229117893|ref|ZP_04247255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-3]
 gi|228665550|gb|EEL21030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock1-3]
 gi|228678407|gb|EEL32630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-28]
 gi|228684541|gb|EEL38483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus Rock3-29]
          Length = 376

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMATEAGLA 194


>gi|213692591|ref|YP_002323177.1| GMP synthase, large subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213524052|gb|ACJ52799.1| GMP synthase, large subunit [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458743|dbj|BAJ69364.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 520

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 63/194 (32%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREKVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNSKPQT--GLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +   +   G+    R              +A+  ++ E  
Sbjct: 260 QVKHDFVAATGIKLITVDAADDFLEALKGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 320 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDIKFQLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|229815927|ref|ZP_04446250.1| hypothetical protein COLINT_02983 [Collinsella intestinalis DSM
           13280]
 gi|229808480|gb|EEP44259.1| hypothetical protein COLINT_02983 [Collinsella intestinalis DSM
           13280]
          Length = 563

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 67/200 (33%), Gaps = 28/200 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E++    R+ V    +++A+SGG DS  +          R+ G+ + + + ++H  L
Sbjct: 234 NLVETMTDEFRAAVGEDRVILALSGGVDSSVVAAL-----GARAVGR-QMTCVFINHGLL 287

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHA 114
           R+   ++V  V     +  +    V  +          T      R             A
Sbjct: 288 RKGEPEQVEEV--FTKQFDVDFVHVHAEERYAALLDGVTDPEEKRRIIGTQFWNEFFAVA 345

Query: 115 KTINAT-----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISR 167
           K +         +     + D +E+      R    K   +    + I +   +   +  
Sbjct: 346 KELEQDGRPVKYLAQGTIYPDIIES----GARKTGGKTATIKSHHNLIPFPEGVHFDLIE 401

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R   L   + 
Sbjct: 402 PLDHFFKDEVRELGLALGLP 421


>gi|195652181|gb|ACG45558.1| tRNA methyltransferase [Zea mays]
          Length = 486

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 44/204 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------K 67
           + P  + V VSGG DS   L  LH+     +   +K          +E            
Sbjct: 72  IAPLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIW-------FQEDFRNFWSECPWD 124

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALIS 111
           ++++Y   VC ++ +   VV   +                 R            ++    
Sbjct: 125 EDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFL 184

Query: 112 EHAKTINATLIMTAHTF--------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           E  + +    I + H          + +  +V   S+    ++   LS +  + L     
Sbjct: 185 EAIENLGFDYIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRR--- 241

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     ++++R    Q  + 
Sbjct: 242 -LLFPLGCITKDEVRRLATQMALP 264


>gi|182419676|ref|ZP_02950917.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237665920|ref|ZP_04525908.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376413|gb|EDT73994.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237658867|gb|EEP56419.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 274

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 89/271 (32%), Gaps = 60/271 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++A SGG DS  LL         +S    K  A+++   L      ++     V +   
Sbjct: 23  IMIAFSGGVDSSLLLKIACDCSKKKST---KVYAVTLHTSLHPM--KDIEIARKVANESG 77

Query: 82  IAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            AH ++     K               ++  +  I E A  +N   +      DD     
Sbjct: 78  AAHIILKIDELKDAGIINNPVNRCYLCKKHLFTKIKEKAAELNIKNVFDGTNEDD----- 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP--FLRCRREDIRSFLLQRNISWCEDPS 193
            M   R       G+  + +       L +  P       ++D+R    +  IS  + PS
Sbjct: 133 -MHVYRP------GIKALKE-------LSVISPLQLTGFTKQDVRKMAEEYKISVADRPS 178

Query: 194 --------------NTD--------DRFER------VRVRRFVRDIDLHALYLKMKKFQD 225
                         N++        + F R      VR+R     + +     +M KF +
Sbjct: 179 APCLATRFPYGTSLNSEEMRNVEKGEDFVRKLGFYNVRLRVHKDIVRIEVDDKEMMKFLE 238

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSIIAISQDI 256
            R  +   +  L   Y+T+ +    + S DI
Sbjct: 239 YRKSIIEFLKTLNYSYITLDIEGFRSGSMDI 269


>gi|171463294|ref|YP_001797407.1| GMP synthase, large subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|226739656|sp|B1XTW6|GUAA_POLNS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|171192832|gb|ACB43793.1| GMP synthase, large subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 535

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 33/191 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR    D   
Sbjct: 224 IRKQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLNEGD--- 274

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAKTI-----NA 119
            V +     L +   V+     +   G +A      A R+       E  +       NA
Sbjct: 275 MVMEMFARNLGVK--VIRVDAKETFMGELAGVSDPEAKRKIIGKEFVEIFQAESGKIKNA 332

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRRED 176
             +     + D +E+          +KG            +  D++L +  P     +++
Sbjct: 333 KWLAQGTIYPDVIESA------GKGKKGAHTIKSHHNVGGLPEDMHLKLLEPLRELFKDE 386

Query: 177 IRSFLLQRNIS 187
           +R   +   + 
Sbjct: 387 VRELGVALGLP 397


>gi|157363475|ref|YP_001470242.1| ExsB family protein [Thermotoga lettingae TMO]
 gi|157314079|gb|ABV33178.1| ExsB family protein [Thermotoga lettingae TMO]
          Length = 313

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 56/184 (30%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-------- 72
            +LVA SGG DS      L + L+ ++ G+ K   ++VD           ++        
Sbjct: 12  KLLVAFSGGEDST-----LVAYLAKQALGEKKVILVTVD---------WGKFTYEKARKG 57

Query: 73  VSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
           V++V   L ++H  +     +       P   +       RYA +          ++ T 
Sbjct: 58  VAEVSKLLGLSHYFIDGVEKQSQIWRYGPSCNMCT-----RYAKLQSILDFGEEAVVATG 112

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
               D                  G++G+       +N     P +   +  IR+ L    
Sbjct: 113 ANRSD----------------SWGINGVK------INGKFYSPLIDLDKGTIRNMLSFFG 150

Query: 186 ISWC 189
           +   
Sbjct: 151 LQPV 154


>gi|222823281|ref|YP_002574854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter lari RM2100]
 gi|254811447|sp|B9KEW8|MNMA_CAMLR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|222538502|gb|ACM63603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter lari RM2100]
          Length = 338

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 61/177 (34%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L     +     +K       H      ++ ++ V  V + L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKQAGHEIIGCYMKL------HGKPNYHEENIQKVEKVANFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
            I + ++  +                        A   R  +   + E AK++    + T
Sbjct: 56  GIKYHILDLQEDFKNQVYMPFINTYKDGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    ++E   +++  D ++         D    +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RIENGLIKTAFDDSKDQSYFLANADKEALE---YLIFPLGEMKKEDVKKFA 167


>gi|321309601|ref|YP_004191930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma haemofelis str. Langford 1]
 gi|319801445|emb|CBY92091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycoplasma haemofelis str. Langford 1]
          Length = 368

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 67/227 (29%), Gaps = 82/227 (36%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-------VDHCLRET------- 65
             +++A+SGG DS         +L  ++       A+        V+    E        
Sbjct: 5   KKVVIALSGGVDS----AISAFLLKQKNH---DLHAVYMQNWDSQVN----EENAEDSGC 53

Query: 66  -AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA---------------- 108
            ++++++YV ++C++L I  +V ++     +           Y                 
Sbjct: 54  SSREDLKYVKEICNKLNIPLTVYNFVPEYWEYVFEP------YLNLVQNNLLSNPDILCN 107

Query: 109 -------LISEHAKTINAT-LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                  L++   +       + T H              R     G  +  +C     D
Sbjct: 108 SKIKFGVLLNRIIQDFGPDIKLATGH------------WARVINRDGRYMLAVCSNPNKD 155

Query: 161 LNLWISR-----------PFLRC-RREDIRSFLLQRNISWC--EDPS 193
              ++SR           P      +E+IR       +S     D +
Sbjct: 156 QTYFLSRLAPDQLKYILFPLQDIQSKEEIREIAKDLELSVWNRRDST 202


>gi|312127518|ref|YP_003992392.1| gmp synthase, large subunit [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777537|gb|ADQ07023.1| GMP synthase, large subunit [Caldicellulosiruptor hydrothermalis
           108]
          Length = 511

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 23/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++S+V    ++ A+SGG DS    + +H  +            I VDH  L
Sbjct: 200 SFIEEKVNEIKSIVGNQKVVCALSGGVDSSVAAVLVHKAIGK------NLYCIFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLR-----IAHSVVSWKNSKPQTGLMAAA----REARYALISEH 113
           R+   +EV  V     +       +          K  T          RE       E 
Sbjct: 254 RKGEAEEVMSVFK--DQFDMNVIKVDAKDRFLDALKGVTEPEEKRKIIGREFIRVFEEEA 311

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +   ++    + D +E+   ++    +   +G  G+ + I ++    I  P     
Sbjct: 312 EKLGDIKFLVQGTIYPDVVESGVGKAATIKSHHNVG--GLPEKIKFEQ---IIEPLRELF 366

Query: 174 REDIRSFLLQRNIS 187
           ++++R   ++  I 
Sbjct: 367 KDEVRRVGIELGIP 380


>gi|291456539|ref|ZP_06595929.1| GMP synthase [Bifidobacterium breve DSM 20213]
 gi|291381816|gb|EFE89334.1| GMP synthase [Bifidobacterium breve DSM 20213]
          Length = 520

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 63/194 (32%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREKVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNS--KPQTGLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +   K   G+    R              +A+  ++ E  
Sbjct: 260 QVKHDFVAATGIKLITVDAADDFLKALKGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 320 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDIKFQLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|317154023|ref|YP_004122071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944274|gb|ADU63325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 349

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 32/125 (25%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-----ETAKDEVRYVSDVC 77
            VAVSGG DS+ L +AL         G  +  A+   H  R       +   +  +++ C
Sbjct: 4   AVAVSGGMDSL-LALALMRA------GGHEVLAV---HG-RFLPSGPDSDKAIAGLAEAC 52

Query: 78  SRLRIAHSVVSWKNSKPQ---TGLMAAAREAR-------------YALISEHAKTINATL 121
           +RL +   V   +    +        A R+ R             +  +   A ++ A  
Sbjct: 53  ARLGVPLHVADLRREFEREVVAPFADAYRQGRTPNPCAVCNPRMKFGALFRFALSLGADA 112

Query: 122 IMTAH 126
           + T H
Sbjct: 113 LATGH 117


>gi|262306111|gb|ACY45648.1| gln amidotransferase [Tomocerus sp. 'Tom2']
          Length = 196

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           ++R  V    +L+ +SGG DS      L   L +      +  A+ VD+  LR+   D  
Sbjct: 36  YIRENVRNQKVLMLLSGGVDSTVCAALLKKALRED-----QIIAVHVDNGFLRKNESD-- 88

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V    SRL +   VV 
Sbjct: 89  -AVEQSLSRLGLKIQVVK 105


>gi|332159562|ref|YP_004424841.1| GMP synthase subunit B [Pyrococcus sp. NA2]
 gi|331035025|gb|AEC52837.1| GMP synthase subunit B [Pyrococcus sp. NA2]
          Length = 308

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/310 (14%), Positives = 102/310 (32%), Gaps = 51/310 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E VR  +R  V  +  ++A+SGG DS    +  +  + DR        A+ V+   LR+ 
Sbjct: 9   EKVRE-IRETVGNSKAIIALSGGVDSSTAAVLAYKAIGDR------LHAVFVNTGFLRKG 61

Query: 66  AKDEVRYVSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYAL---ISEHAKT 116
              E  +V              +      +   K  T      +           E A+ 
Sbjct: 62  ---EPEFVVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVARE 118

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I A  ++      D +E       +   +    + G+ + +    NL +  P     +++
Sbjct: 119 IGAEYLIQGTIAPDWIE------SQGKIKSHHNVGGLPERL----NLKLIEPLRDLYKDE 168

Query: 177 IRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLR 227
           +R       +         +  + R         VRV   + ++    + +  +    + 
Sbjct: 169 VRELAKFLGLP--------EKIYNRMPFPGPGLAVRV---IGEVTPEKIRIVREANAIVE 217

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            +V  A       +  +     + +  DI     T+   ++  +  +    +++P +  +
Sbjct: 218 EEVEKAGLRPWQAFAVLLGVKTVGVQGDIRAYKETIAVRIVESTDGMTANAMNVP-WEVL 276

Query: 288 ERVMLFLKSG 297
           +R+   + S 
Sbjct: 277 QRIAFRITSE 286


>gi|224372387|ref|YP_002606759.1| tRNA-specific 2-thiouridylase MnmA [Nautilia profundicola AmH]
 gi|223589875|gb|ACM93611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nautilia profundicola AmH]
          Length = 341

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 34/187 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD---V 76
             +LV VSGG DS   +  L     D     +K     V+H         V  V+    +
Sbjct: 3   KRVLVGVSGGVDSAMSVYLLKEQGYDVVGIYMKMHE-GVNH---------VENVAKLNRL 52

Query: 77  CSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTINAT 120
             +L   + +   ++   +                   A    + ++ +     +     
Sbjct: 53  SKKLGFEYVIEDVEDEFRKEVYEYFVESYKQGITPNPCAMCNIKIKFGIFMGFLEKYGCE 112

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           L  T H   +  E    +++    ++   L G+   +L      I  P     +++I+  
Sbjct: 113 LAATGHYVRNDGE-FLYQAKDQSKDQSYFLFGIKKKVLPK----ILFPLGEYTKDEIKKL 167

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 168 ASEIGLD 174


>gi|221639030|ref|YP_002525292.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides KD131]
 gi|254811459|sp|B9KR64|MNMA_RHOSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221159811|gb|ACM00791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides KD131]
          Length = 379

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 54/237 (22%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M   P+ S+ F          ++VA+SGG DS  +   L +   D     ++      DH
Sbjct: 1   MLDHPLNSLGFA--KPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLY----DH 54

Query: 61  CLRET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--- 109
                        A  ++     V   +   H V+ ++N+  +  +   A          
Sbjct: 55  G--AALAKKGACCAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPV 112

Query: 110 -------------ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
                        + + AK ++A  + T H             QR     G  L    D 
Sbjct: 113 PCIRCNERVKFKDLLQTAKDLDADCMATGH-----------YIQRKMGPAGPELHCAADP 161

Query: 157 IL----------YDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                        +   ++  P      + + R+   +  +   + P + D  F   
Sbjct: 162 ARDQSYFLFSTTPEQLAFLRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPN 218


>gi|330833760|ref|YP_004402585.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3]
 gi|329307983|gb|AEB82399.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3]
          Length = 419

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     +          TA ++ +
Sbjct: 51  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGFC-------TATEDYK 103

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAK 115
            V+ V  ++ I +  V+++            A  R  R             +    ++A 
Sbjct: 104 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 163

Query: 116 TINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            + A  + T H      D+  TV  +R   +  ++   LS +    L         P   
Sbjct: 164 NLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMF----PLGH 219

Query: 172 CRREDIRSFLLQRNIS 187
            ++  +R    +  ++
Sbjct: 220 LQKPQVREIAERAGLA 235


>gi|255994274|ref|ZP_05427409.1| GMP synthase domain protein [Eubacterium saphenum ATCC 49989]
 gi|255993942|gb|EEU04031.1| GMP synthase domain protein [Eubacterium saphenum ATCC 49989]
          Length = 326

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
          +R+ +    +L+A+SGG DS  +   L   + D      +   + V+H L
Sbjct: 30 LRAQIGSDRVLLALSGGVDSSVVAALLIKAVGD------QLIGVHVNHGL 73


>gi|223933686|ref|ZP_03625662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis 89/1591]
 gi|223897639|gb|EEF64024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Streptococcus suis 89/1591]
          Length = 419

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     +          TA ++ +
Sbjct: 51  SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGFC-------TATEDYK 103

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAK 115
            V+ V  ++ I +  V+++            A  R  R             +    ++A 
Sbjct: 104 DVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAM 163

Query: 116 TINATLIMTAHTFD---DQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            + A  + T H      D+  TV  +R   +  ++   LS +    L         P   
Sbjct: 164 NLGADYVATGHYAQVSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMF----PLGH 219

Query: 172 CRREDIRSFLLQRNIS 187
            ++  +R    +  ++
Sbjct: 220 LQKPQVREIAERAGLA 235


>gi|169832175|ref|YP_001718157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Desulforudis audaxviator MP104C]
 gi|205816638|sp|B1I677|MNMA_DESAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169639019|gb|ACA60525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 343

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 54/192 (28%), Gaps = 41/192 (21%)

Query: 20  AHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           A + VA+SGG DS    LL      + +        +  +                + V 
Sbjct: 2   ATVAVALSGGVDSSTTALL------MKEAGHRVFTLTMAT--------NDRVAAEAARVS 47

Query: 78  SRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATL 121
           + L + H V+                            A  R+ +Y  +   A    A  
Sbjct: 48  AFLGLPHHVLDISGLFEQRVIGPFCAAYLEGRTPNPCIACNRDLKYGTLFRQAVEWGADY 107

Query: 122 IMTAHTFDDQLET-----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             T H    + E      V +R++    ++   L  +    L      +  P     +E 
Sbjct: 108 FATGHYARVRFEPEPGRYVLLRARDPRKDQSYVLFYLDQERLAR----LLLPLGDLTKET 163

Query: 177 IRSFLLQRNISW 188
           +R       I +
Sbjct: 164 VREKARAAGIPF 175


>gi|92112863|ref|YP_572791.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Chromohalobacter salexigens DSM 3043]
 gi|91795953|gb|ABE58092.1| GMP synthase (glutamine-hydrolyzing) [Chromohalobacter salexigens
           DSM 3043]
          Length = 525

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V   H+L+ +SGG DS  +   LH  + D      + + + VD+  LR+   D+V 
Sbjct: 221 VREQVGDRHVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRKNEGDQVM 274

Query: 72  YVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALI-----SEHAKTINAT 120
                 S + +   V+                   A R+            E AK     
Sbjct: 275 --ETFASHMGV--RVLRVDAEDEFLTKLEGENDPEAKRKIIGNTFIDVFDREAAKIEGVD 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +   + L +  P     ++++R  
Sbjct: 331 FLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPETMKLKLVEPLRELFKDEVRKL 387

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 388 GLELGLPY 395


>gi|295107449|emb|CBL04992.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
          subunit [Gordonibacter pamelaeae 7-10-1-b]
          Length = 327

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R+ +    +L+A+SGG DS  +   L   +        +   + V+H L
Sbjct: 29 AIRAQIGDQKVLLALSGGVDSSVVAALLIKAIGK------QLICVHVNHGL 73


>gi|259047787|ref|ZP_05738188.1| GMP synthase [Granulicatella adiacens ATCC 49175]
 gi|259035464|gb|EEW36719.1| GMP synthase [Granulicatella adiacens ATCC 49175]
          Length = 517

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 28/200 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  L
Sbjct: 207 SFIEMEIAKIREKVGHKKVLLGLSGGVDSSVVGVLLQKAIDD------QLICIFVDHGLL 260

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           R+   D+V     +  +  +    V+ +          S P+        E  Y    E 
Sbjct: 261 RKGEGDQVM--ESLSGKFGLNIIRVNAQERFLSKLKGVSDPEQKRKIIGNEFVYVFDDEA 318

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK  +   +     + D +E            + +        +  D+   +  P     
Sbjct: 319 AKLTDVDFLAQGTLYTDIIE------SGTKTAQTIKSHHNVGGLPEDMQFELIEPLNTLF 372

Query: 174 REDIRSFLLQRN----ISWC 189
           ++++R+          I W 
Sbjct: 373 KDEVRALGTALGMPDSIVWR 392


>gi|157414176|ref|YP_001485042.1| PP family ATPase [Prochlorococcus marinus str. MIT 9215]
 gi|157388751|gb|ABV51456.1| ATP-utilizing enzymes of the PP-loop superfamily [Prochlorococcus
           marinus str. MIT 9215]
          Length = 274

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 38/191 (19%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++R ++++L     + +A SGG DS  +       L  ++      S    +  LRE AK
Sbjct: 18  TIRRYIKNL---ESVCIAYSGGVDSTLVASLAFEQLGSKAIAITGISPALAN-TLREEAK 73

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATL 121
            + +++        + H  +          SK       A ++  +   +  +K +N  +
Sbjct: 74  SQAKWI-------GVKHLEIKTSELDKSSYSKNPKDRCFACKKELHKHTTYLSKKLNYKI 126

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRS 179
           ++     DD                   L      I       +  P    +  ++DIR 
Sbjct: 127 VLDGVNLDD-------------------LKDYRPGIQASKQAGVISPLAKFKFSKQDIRD 167

Query: 180 FLLQRNISWCE 190
                   W +
Sbjct: 168 ISKALGFPWWD 178


>gi|240047229|ref|YP_002960617.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma conjunctivae
           HRC/581]
 gi|239984801|emb|CAT04780.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma conjunctivae]
          Length = 370

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 60/203 (29%), Gaps = 51/203 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-------SV-----------DHC 61
           + I+V +SGG DS      L            +  A+       ++           DH 
Sbjct: 2   SRIVVGLSGGVDSSVTAYLLKQ-------QGHEVIAVFMRNWDSTINNDIKGNDSYQDH- 53

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR--------------- 106
           +    KD +     +  +L I    V + +            + +               
Sbjct: 54  ICPQEKDWLD-AQKIAKQLDIPIHRVDFIDEYWNEVFEDLIEKYKNGKTPNPDILCNKNI 112

Query: 107 --YALISEHAKTINATLIMTAHTFDDQLE-TVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
                ++   +   A  I   H    + E +    ++ +  ++   LS + +  L     
Sbjct: 113 KFKHFLNYSIEKFKADFIAMGHYA--KTENSFLFEAKDENKDQSYFLSQLSNEQLKK--- 167

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
            +  P     ++ +R    ++N+
Sbjct: 168 -VLFPLGDYTKDQVRKIAFEQNL 189


>gi|78776623|ref|YP_392938.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sulfurimonas denitrificans DSM 1251]
 gi|91206838|sp|Q30TH8|GUAA_SULDN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78497163|gb|ABB43703.1| GMP synthase (glutamine-hydrolyzing) [Sulfurimonas denitrificans
           DSM 1251]
          Length = 516

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L  +SGG DS  +   L+  + D      +   + VD+  LR+  +++V 
Sbjct: 213 IRAKVGSGKVLCGLSGGVDSSVVAAMLYEAIGD------QLVPVFVDNGLLRKGEREQVE 266

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V  +   L++   VV  +          S P+                E  K      +
Sbjct: 267 EVFKI--NLKVPLVVVDARENFLSKLAGVSDPEKKRKIIGHTFIEEFEKEAKKHDGIKFL 324

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E++ +    +  +    + G+ D + ++    +  P     ++++R   L
Sbjct: 325 AQGTLYPDVIESISVNGPSEVIKSHHNVGGLPDWMDFE----LIEPLRELFKDEVRKIGL 380

Query: 183 QRNIS 187
           +  + 
Sbjct: 381 ELGLP 385


>gi|77413629|ref|ZP_00789815.1| GMP synthase [Streptococcus agalactiae 515]
 gi|77160338|gb|EAO71463.1| GMP synthase [Streptococcus agalactiae 515]
          Length = 520

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGLLRKNEGD--- 269

Query: 72  YVSDVCSRLRIAH--SVVSWKNSKPQ----TGLMAAAREAR-------YALISEHAKTIN 118
               V   L      +++    SK      +G+    R+ +       Y    E +K   
Sbjct: 270 ---QVMDMLGGKFGLNIIRVDASKRFLDLLSGVEDPERKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRNIS 187
           +      + 
Sbjct: 381 ALGTALGMP 389


>gi|77408612|ref|ZP_00785347.1| GMP synthase [Streptococcus agalactiae COH1]
 gi|77172805|gb|EAO75939.1| GMP synthase [Streptococcus agalactiae COH1]
          Length = 520

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGLLRKNEGD--- 269

Query: 72  YVSDVCSRLRIAH--SVVSWKNSKPQ----TGLMAAAREAR-------YALISEHAKTIN 118
               V   L      +++    SK      +G+    R+ +       Y    E +K   
Sbjct: 270 ---QVMDMLGGKFGLNIIRVDASKRFLDLLSGVEDPERKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRNIS 187
           +      + 
Sbjct: 381 ALGTALGMP 389


>gi|22537128|ref|NP_687979.1| GMP synthase [Streptococcus agalactiae 2603V/R]
 gi|25011007|ref|NP_735402.1| GMP synthase [Streptococcus agalactiae NEM316]
 gi|76788259|ref|YP_329683.1| GMP synthase [Streptococcus agalactiae A909]
 gi|76797788|ref|ZP_00780054.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus agalactiae 18RS21]
 gi|77405704|ref|ZP_00782791.1| GMP synthase [Streptococcus agalactiae H36B]
 gi|77412429|ref|ZP_00788735.1| GMP synthase [Streptococcus agalactiae CJB111]
 gi|44887960|sp|Q8E5M8|GUAA_STRA3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|44888000|sp|Q8DZX7|GUAA_STRA5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206833|sp|Q3K1C0|GUAA_STRA1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|22533990|gb|AAM99851.1|AE014236_5 GMP synthase [Streptococcus agalactiae 2603V/R]
 gi|23095407|emb|CAD46612.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563316|gb|ABA45900.1| GMP synthase [Streptococcus agalactiae A909]
 gi|76586864|gb|EAO63356.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus agalactiae 18RS21]
 gi|77161520|gb|EAO72525.1| GMP synthase [Streptococcus agalactiae CJB111]
 gi|77175700|gb|EAO78482.1| GMP synthase [Streptococcus agalactiae H36B]
          Length = 520

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGLLRKNEGD--- 269

Query: 72  YVSDVCSRLRIAH--SVVSWKNSKPQ----TGLMAAAREAR-------YALISEHAKTIN 118
               V   L      +++    SK      +G+    R+ +       Y    E +K   
Sbjct: 270 ---QVMDMLGGKFGLNIIRVDASKRFLDLLSGVEDPERKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRNIS 187
           +      + 
Sbjct: 381 ALGTALGMP 389


>gi|323485784|ref|ZP_08091119.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum
           WAL-14163]
 gi|323693136|ref|ZP_08107354.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum
           WAL-14673]
 gi|323400772|gb|EGA93135.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum
           WAL-14163]
 gi|323502619|gb|EGB18463.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum
           WAL-14673]
          Length = 359

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 38/198 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETA 66
              ++V +SGG DS      L                 +    + +         L   A
Sbjct: 3   KKKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEEPEIQEENGGCC---GLS--A 57

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALI 110
            D+ R V      L I + V+++K    +                    A  R  ++  +
Sbjct: 58  VDDARRV---AENLGIPYYVMNFKREFKENVMDYFVQEYIEGKTPNPCIACNRFVKWESL 114

Query: 111 SEHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            + +  I A  I T H    +QLE      ++           + +   + L+  +  P 
Sbjct: 115 LKRSMDIGADYIATGHYARIEQLENGRYTLRKSATAAKDQTYALYNLTQHQLSHTLM-PV 173

Query: 170 LRCRREDIRSFLLQRNIS 187
               +++IR    +  ++
Sbjct: 174 GEYTKDEIRGMADKIGLN 191


>gi|296501081|ref|YP_003662781.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus thuringiensis BMB171]
 gi|296322133|gb|ADH05061.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus thuringiensis BMB171]
          Length = 466

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 156 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 209

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 210 RKG---EAEGVMKTFSEGFHMNVIKVDARDRFMDKLKGVEDPEQKRKIIGNEFIYVFDDE 266

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 267 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 320

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 321 FKDEVRVLGSELGIP 335


>gi|228956693|ref|ZP_04118482.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229042155|ref|ZP_04189912.1| GMP synthase, large subunit [Bacillus cereus AH676]
 gi|229143053|ref|ZP_04271489.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST24]
 gi|228640418|gb|EEK96812.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST24]
 gi|228727190|gb|EEL78390.1| GMP synthase, large subunit [Bacillus cereus AH676]
 gi|228802994|gb|EEM49823.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 515

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDARDRFMDKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|187928397|ref|YP_001898884.1| GMP synthase [Ralstonia pickettii 12J]
 gi|254800110|sp|B2UBD1|GUAA_RALPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187725287|gb|ACD26452.1| GMP synthase, large subunit [Ralstonia pickettii 12J]
          Length = 539

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 27/200 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I+     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIDEAVKAIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  -LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYA 108
            LR    DE + V D    RL     VV    S+   G +A             RE    
Sbjct: 259 LLR---LDEGKMVMDMFAGRLH--AKVVHVDASEQFLGHLAGVTDPEAKRKIIGREFVEV 313

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             +E  K  NA  +     + D +E+      +      +        +   L L +  P
Sbjct: 314 FQAEAKKLSNAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEP 370

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R   +   +  
Sbjct: 371 LRDLFKDEVRELGVALGLPH 390


>gi|159116221|ref|XP_001708332.1| Hypothetical protein GL50803_115232 [Giardia lamblia ATCC 50803]
 gi|157436443|gb|EDO80658.1| hypothetical protein GL50803_115232 [Giardia lamblia ATCC 50803]
          Length = 552

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 91  NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150
               +    +     R   ++          +   H   D LET+ +      +  G+  
Sbjct: 392 QEARKASACSVCSRCRRGTLASFVSAGGYDALALGHHLLDDLETLAITGVHGASFFGLRG 451

Query: 151 SGMCDTILY----DLNLWISRPFLRCRREDIRSFLLQRNIS 187
              C+   +       + I RP L     +I   +L   +S
Sbjct: 452 YYNCEVRDFASRARHRVCILRPMLSVHVSEISRVVLHNGLS 492


>gi|30018516|ref|NP_830147.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus cereus ATCC 14579]
 gi|229125762|ref|ZP_04254790.1| GMP synthase, large subunit [Bacillus cereus BDRD-Cer4]
 gi|44887947|sp|Q81IS3|GUAA_BACCR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29894056|gb|AAP07348.1| GMP synthase, glutamine-hydrolyzing [Bacillus cereus ATCC 14579]
 gi|228657702|gb|EEL13512.1| GMP synthase, large subunit [Bacillus cereus BDRD-Cer4]
          Length = 515

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDARDRFMDKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|28211997|ref|NP_782941.1| GMP synthase [Clostridium tetani E88]
 gi|44887955|sp|Q891G7|GUAA_CLOTE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28204440|gb|AAO36878.1| GMP synthase (glutamine-hydrolyzing) [Clostridium tetani E88]
          Length = 510

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R LV    ++ A+SGG DS    + +H  + D      + + I VDH  LR+   D+V 
Sbjct: 209 IRELVGDKKVICALSGGVDSSVAAVIVHKAIGD------QLTCIFVDHGLLRKDEGDQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATLI 122
            +     + ++    V+ ++       G+    R+ +        +  E A  +     +
Sbjct: 263 SIFK--EKFQMNLIRVNAQDRFLGKLKGVTEPERKRKIIGEEFIRVFEEEANKLGKIDYL 320

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +    + D +E              +        +  D+   +  P     ++++R    
Sbjct: 321 VQGTIYPDVVE------SGTDTSATIKSHHNVGGLPEDIEFELIEPLRELFKDEVRRVGE 374

Query: 183 QRNISW 188
           +  I  
Sbjct: 375 ELGIPH 380


>gi|322378352|ref|ZP_08052808.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter suis HS1]
 gi|322380922|ref|ZP_08054993.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter suis HS5]
 gi|321146645|gb|EFX41474.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter suis HS5]
 gi|321149209|gb|EFX43653.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Helicobacter suis HS1]
          Length = 512

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 99/300 (33%), Gaps = 60/300 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L AVSGG DS  +       L        +   + VDH  LR   KD   
Sbjct: 207 IKKQVGKERVLCAVSGGVDSSVVACLCSQALPG------QLEVVFVDHGLLRLGEKD--- 257

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTG-----------LMAAAREARYALIS 111
            V  +   L I   V+               P++                A+E R     
Sbjct: 258 QVIKMFQGLSIPLHVIEASSLFLERLSGVVDPESKRKIIGHTFIEVFEKKAQELRA---- 313

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
               +     +     + D +E+V ++   +  +    + G+ + + +     +  P   
Sbjct: 314 ----SGKIKFLAQGTLYPDVIESVRIKGPSEVIKSHHNVGGLPEKMDFK----LLEPLKE 365

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKK 222
             ++++R+  L+  +         +   +R         +R+   +   +L  L      
Sbjct: 366 LFKDEVRALGLELGLP--------EFMLKRHPFPGPGLAIRILGAIDSKNLEILREADAI 417

Query: 223 FQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
           F     + N    +     + +++RS + +  D    ++TL    ++ S  +    + LP
Sbjct: 418 FIKTLQQANLYDQIWQAFCVLLNVRS-VGVMGDRRTYENTLALRAVQASDGMSAQCVPLP 476


>gi|322434612|ref|YP_004216824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX9]
 gi|321162339|gb|ADW68044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX9]
          Length = 379

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 25/133 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCL------RETAKDE 69
           P  I VA+SGG DS  +   LH    D     ++      ++    +      R  + D+
Sbjct: 8   PETIAVAMSGGVDSSAVAALLHEQGYDLIGLTLQLWNQRRLAGHEGMPESVQGRCCSIDD 67

Query: 70  VRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAR----------EARYALISEH 113
           V     V  ++ I + +V+          KP      A R            ++  +   
Sbjct: 68  VYDARRVAEKIGIPYYLVNQQERFEADVVKPFVSEYLAGRTPIPCTLCNNHLKFDQLLLT 127

Query: 114 AKTINATLIMTAH 126
           A+ + AT I T H
Sbjct: 128 ARQVGATKIATGH 140


>gi|239929411|ref|ZP_04686364.1| GMP synthase [Streptomyces ghanaensis ATCC 14672]
 gi|291437737|ref|ZP_06577127.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptomyces ghanaensis ATCC 14672]
 gi|291340632|gb|EFE67588.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptomyces ghanaensis ATCC 14672]
          Length = 526

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 26/190 (13%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R LV     +  +SGG DS     A+ + L  ++ G  + + + VDH L R+   ++V
Sbjct: 217 AIRELVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLMRKGETEQV 270

Query: 71  R--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
              +V+    +L++  +   +  +          R+          +   A ++      
Sbjct: 271 EKDFVAATGVQLKVVDASERFLAALKGVSDPEEKRKIIGREFIRVFEQAQAEIVA----- 325

Query: 129 DDQ---LE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDI 177
            D+   +E     T+Y          G            +  DL   +  P  +  ++++
Sbjct: 326 -DEGPAVEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFKLIEPLRQLFKDEV 384

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 385 RMVGQELGLP 394


>gi|126462403|ref|YP_001043517.1| GMP synthase [Rhodobacter sphaeroides ATCC 17029]
 gi|332558427|ref|ZP_08412749.1| GMP synthase [Rhodobacter sphaeroides WS8N]
 gi|226739712|sp|A3PK79|GUAA_RHOS1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|126104067|gb|ABN76745.1| GMP synthase (glutamine-hydrolyzing) [Rhodobacter sphaeroides ATCC
           17029]
 gi|332276139|gb|EGJ21454.1| GMP synthase [Rhodobacter sphaeroides WS8N]
          Length = 518

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR   A+  V
Sbjct: 214 IRAQVGDQKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLLRLGEAEQVV 267

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
               D      +        +         S P+       R          A    AT 
Sbjct: 268 TMFRD---HYNMPLIHADESDLFLGALEGVSDPEVKRKTIGRLFIDVFQKHAADVGGATF 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 325 LAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALG 381

Query: 182 LQRNIS 187
            +  + 
Sbjct: 382 RELGLP 387


>gi|332186867|ref|ZP_08388609.1| GMP synthase (glutamine-hydrolyzing) [Sphingomonas sp. S17]
 gi|332013200|gb|EGI55263.1| GMP synthase (glutamine-hydrolyzing) [Sphingomonas sp. S17]
          Length = 517

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VD   LR+    E  
Sbjct: 213 IREQVGSGRVICGLSGGVDSSVAALLIHEAIGD------QLTCVFVDGGILRQG---EAE 263

Query: 72  YVSDVCS-RLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEHAKTI-NATL 121
            V  +      I    V  +             EA+               AK I  A  
Sbjct: 264 QVVSLFRGHYNIPLVHVDAQELFMGGLAGVTDPEAKRKFIGKTFIDVFEAEAKKIGGAEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 324 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRVLG 380

Query: 182 LQRNIS 187
            +  + 
Sbjct: 381 RELGLP 386


>gi|163785075|ref|ZP_02179792.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879656|gb|EDP73443.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 351

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 41/196 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--------EVRY 72
            + V +SGG DS    + L     D +   +K S+I       E + D        +V+ 
Sbjct: 2   KVAVGMSGGVDSSVAALLLKEKGYDVTGITLKLSSI-------ENSCDIQVCCSPQDVKD 54

Query: 73  VSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKT 116
              V S L I H  + W+                        +   RE +   + ++   
Sbjct: 55  AEKVASFLGIEHYTIDWEKDFKNKVIDYFVNELKEGKTPNPCSVCNREIKTGRLYKYVNL 114

Query: 117 -INATLIMTAHTFDDQLETVYMR----SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
              A  + T H     ++TV +      +R    K      M       LN  +  P   
Sbjct: 115 VFGADFLATGH----YIKTVEINGQKLIKRGKDLKKDQSYFMALVEKEVLNGLLF-PLGD 169

Query: 172 CRREDIRSFLLQRNIS 187
             +E++R    +  + 
Sbjct: 170 FTKEEVRKIAEKYGLP 185


>gi|220928361|ref|YP_002505270.1| ExsB family protein [Clostridium cellulolyticum H10]
 gi|219998689|gb|ACL75290.1| ExsB family protein [Clostridium cellulolyticum H10]
          Length = 269

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 59/199 (29%), Gaps = 41/199 (20%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  + + F   ++       VA SGG DS  LL   + VL +         A++     
Sbjct: 1   MSVFDKLDFLKTNIKALGSAAVAFSGGVDSSLLLKVAYDVLGN------GVVAVTAH--- 51

Query: 63  RETA---KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEH 113
             ++   + E+    +  +   I H ++     + +             +   Y  I   
Sbjct: 52  --SSTYPEREMNEAKEFTANYGIKHRIIDSDELEVKGFSDNPVNRCYLCKNELYDKIQLV 109

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR-- 171
           AK  N   I+     DD                G    G      +     +  P     
Sbjct: 110 AKEENVKYILEGSNHDDL---------------GDYRPGFQAVSEHG----VLSPLKDAL 150

Query: 172 CRREDIRSFLLQRNISWCE 190
             +++IR    +  +   +
Sbjct: 151 LTKDEIRFLSKEMGLKSWD 169


>gi|293376552|ref|ZP_06622780.1| protein ExsB [Turicibacter sanguinis PC909]
 gi|325839386|ref|ZP_08166825.1| protein ExsB [Turicibacter sp. HGF1]
 gi|292644778|gb|EFF62860.1| protein ExsB [Turicibacter sanguinis PC909]
 gi|325490506|gb|EGC92822.1| protein ExsB [Turicibacter sp. HGF1]
          Length = 219

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +LV  SGG DS   L        +         A++ D+  R     E+     +C  L 
Sbjct: 7  VLV-FSGGQDSTTCLYWALETFKE-------VIAVTFDYGQRHH--LELECAKAICQELG 56

Query: 82 IAHSVVS 88
          + H V+ 
Sbjct: 57 VEHHVLD 63


>gi|313113898|ref|ZP_07799457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623777|gb|EFQ07173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 367

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 60/191 (31%), Gaps = 36/191 (18%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-----------AKDEVR 71
           L+A+SGG DS      +     D +   ++ +        R             ++ ++ 
Sbjct: 13  LIAMSGGVDSSVAAWLMQQAGYDCTGITMRLT--------RNETLGQSGFHTCCSEKDIE 64

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAK 115
             ++V   + I + V+ +     +  +    R                  ++  + + A+
Sbjct: 65  DAAEVAYAMDIPYEVLDFTADFREQIIEKFVRVYEAGGTPNPCIDCNKYMKFRHLLDWAR 124

Query: 116 TINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                 ++T H    +Q E       +   ++G   S +   +  +    I  P     +
Sbjct: 125 AHGMEYVVTGHYARVEQDEATGRFLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPLGGLHK 184

Query: 175 EDIRSFLLQRN 185
            ++R    Q  
Sbjct: 185 TEVREIAEQHK 195


>gi|237736558|ref|ZP_04567039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420420|gb|EEO35467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 352

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 64/188 (34%), Gaps = 30/188 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS   +  L            +   ++++H   E+ K+E+     V + 
Sbjct: 4   KKVVLGMSGGVDSSISVYLLQK-------QGYEVIGVTLNHKKEESLKEEIDSAKKVANF 56

Query: 80  LRIAHSVVSWKNSKPQT---------------GLMAAAREA-RYALISEHAKTINATLIM 123
             I H V+  ++   +                       E  +  ++ + A    A  + 
Sbjct: 57  FNIKHRVIDIEDIFQKEVVNNFLDGYSKGITPSPCVICDERVKMKILFDIADEEKAYYVA 116

Query: 124 TAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T H      +++ + + ++  +D  +     S M   +  D    +  P  +  + +IR 
Sbjct: 117 TGHYCSTEYNEEFDKILLKKAKDSKKDQ---SYMLYRLDSDKISRLLFPLFKYTKNEIRE 173

Query: 180 FLLQRNIS 187
                 + 
Sbjct: 174 IGENIGLE 181


>gi|228919192|ref|ZP_04082565.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840470|gb|EEM85738.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 515

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+           P+        E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229107930|ref|ZP_04237560.1| GMP synthase, large subunit [Bacillus cereus Rock1-15]
 gi|228675528|gb|EEL30742.1| GMP synthase, large subunit [Bacillus cereus Rock1-15]
          Length = 515

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+           P+        E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229148655|ref|ZP_04276908.1| GMP synthase, large subunit [Bacillus cereus m1550]
 gi|229176849|ref|ZP_04304248.1| GMP synthase, large subunit [Bacillus cereus 172560W]
 gi|228606631|gb|EEK64053.1| GMP synthase, large subunit [Bacillus cereus 172560W]
 gi|228634816|gb|EEK91392.1| GMP synthase, large subunit [Bacillus cereus m1550]
          Length = 515

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+           P+        E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229188527|ref|ZP_04315569.1| GMP synthase, large subunit [Bacillus cereus ATCC 10876]
 gi|228594955|gb|EEK52732.1| GMP synthase, large subunit [Bacillus cereus ATCC 10876]
          Length = 515

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+           P+        E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|218231195|ref|YP_002365095.1| GMP synthase [Bacillus cereus B4264]
 gi|226738385|sp|B7H4Q8|GUAA_BACC4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218159152|gb|ACK59144.1| GMP synthase [Bacillus cereus B4264]
          Length = 512

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  K+           P+        E  Y    E
Sbjct: 256 RKG---EAEGVMKTFSEGFHMNVIKVDAKDRFMDKLKGVEDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 367 FKDEVRVLGSELGIP 381


>gi|311111904|ref|YP_003983126.1| GMP synthase [Rothia dentocariosa ATCC 17931]
 gi|310943398|gb|ADP39692.1| GMP synthase [Rothia dentocariosa ATCC 17931]
          Length = 530

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS      +H  + D      + +   +DH  LR   +++V 
Sbjct: 219 IREQVGEDRVICALSGGVDSSVAAALVHKAVGD------QLTCFFIDHGLLRAGEREQVE 272

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL------ISEHAKT 116
              D  + + I    +             S P+       RE   +       + E A  
Sbjct: 273 --QDYAASMGIRVITIDESERFLTALAGVSDPEQKRKIIGREFIRSFEQAERKLIEEAGE 330

Query: 117 INAT--LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             A    ++    + D +E+             +        +  DL   +  P     +
Sbjct: 331 EGAQIKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLAFELVEPLRTLFK 385

Query: 175 EDIRSFLLQRNIS 187
           +++R+   Q  + 
Sbjct: 386 DEVRAIGRQLGVP 398


>gi|222100468|ref|YP_002535036.1| ExsB family protein [Thermotoga neapolitana DSM 4359]
 gi|221572858|gb|ACM23670.1| ExsB family protein [Thermotoga neapolitana DSM 4359]
          Length = 314

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 38/183 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR- 71
           +R  V    + VA SGG DS      L ++L+  + G+ +   ++VD        ++ R 
Sbjct: 8   IRETVKDGKLYVAFSGGKDSS-----LVAILAKMALGEERVELVTVD--WGPYTYEKSRK 60

Query: 72  YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            V     +  + H+ +       K  +      A  R+ +  L+ E+A      L+ +  
Sbjct: 61  IVRSFAEKYGLKHTFIPSNGLQEKVWRYGPSCNACTRDVKTRLVKEYA---GGCLVASGA 117

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
              D                     G     ++D    +  P  R  + +I + +    I
Sbjct: 118 NASD-------------------SWGKTGLKVFDG---VYSPLYRVGKAEINAMIDHLGI 155

Query: 187 SWC 189
              
Sbjct: 156 EVR 158


>gi|153812066|ref|ZP_01964734.1| hypothetical protein RUMOBE_02462 [Ruminococcus obeum ATCC 29174]
 gi|149831965|gb|EDM87051.1| hypothetical protein RUMOBE_02462 [Ruminococcus obeum ATCC 29174]
          Length = 261

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 42/183 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSD 75
             + VA S G DS  LL A    L     GK K  A++       ++    + E++  ++
Sbjct: 2   GSVAVAFSSGVDSTFLLKAALEAL-----GKDKVIAVT------ASSCSFPERELKEATE 50

Query: 76  VCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
            C    + H +   +        +         +   +  I + AK  +   +      D
Sbjct: 51  FCKENGVRHIICKSEELDIDGFRQNPKNRCYLCKHELFEKIWQIAKENSMNAVAEGSNMD 110

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
           D              +   GL  + +       L +S P       +E+IR    +  + 
Sbjct: 111 DN------------GDYRPGLIAVKE-------LGVSSPLRQAELYKEEIRELSKEMGLP 151

Query: 188 WCE 190
             +
Sbjct: 152 TWD 154


>gi|154251625|ref|YP_001412449.1| GMP synthase [Parvibaculum lavamentivorans DS-1]
 gi|154155575|gb|ABS62792.1| GMP synthase, large subunit [Parvibaculum lavamentivorans DS-1]
          Length = 526

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRETAKDEVR 71
           VR+ V    ++  +SGG DS  + + LH  + D      +   + VD   +R     E  
Sbjct: 222 VRAQVGKGRVICGLSGGVDSSVVAVLLHEAIGD------QLQCVFVDTGMMRAG---EAE 272

Query: 72  YVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      I        +         S P+                E      A  
Sbjct: 273 QVVSLFRNHYNIPLVHRDASDLFLGKLEGVSDPEKKRKIIGATFIDVFEEEARNIGGADF 332

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 333 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRELG 389

Query: 182 LQRNISW 188
            +  +  
Sbjct: 390 RELGLPP 396


>gi|114706635|ref|ZP_01439536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fulvimarina pelagi HTCC2506]
 gi|114538027|gb|EAU41150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fulvimarina pelagi HTCC2506]
          Length = 394

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 57/206 (27%), Gaps = 53/206 (25%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS----------VLSDRSFGKIKFSAISVDHCLRETA 66
                ++VA+SGG DS      L             L D      K  A          A
Sbjct: 14  PEDTRVIVAMSGGVDSSVTAAILKDEGYDVVGITLQLYDAGDTPAKAGACC--------A 65

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALI 110
             ++R    VC  L I H V+ ++ +  +  +   A                   ++  +
Sbjct: 66  GQDIRDARRVCDLLGIPHYVLDYEENFREAVIDPFADAYVAGETPIPCVSCNQTVKFRDL 125

Query: 111 SEHAKTINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
            + A  +    + T H                    R      ++   L G     +   
Sbjct: 126 LKTAMDLGGDALATGHYIESRKRGNHRS------LHRPFDLDRDQSYFLYGTTQKQV--- 176

Query: 162 NLWISRPFLRCRREDIRSFLLQRNIS 187
             ++  P     +++ R    +  ++
Sbjct: 177 -DFLRFPLASLTKDETREIAAKHGLA 201


>gi|186681209|ref|YP_001864405.1| GMP synthase [Nostoc punctiforme PCC 73102]
 gi|226739650|sp|B2J9G3|GUAA_NOSP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|186463661|gb|ACC79462.1| GMP synthase, large subunit [Nostoc punctiforme PCC 73102]
          Length = 540

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 67/194 (34%), Gaps = 22/194 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++R  +R+ V    +L+A+SGG DS  L   L+  + +      + + + +D    R+ 
Sbjct: 225 EAIRE-IRTRVGEKRVLLALSGGVDSSTLAFLLYKAIGE------QLTCVFIDQGFMRKY 277

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYAL---ISEHAKTI 117
             +  R V     +  I    V+ ++         T      R   +       E +K +
Sbjct: 278 --EPERLVKLFQEQFHIPVEYVNARDRFLAKVAGVTDPEEKRRRIGHEFINVFEETSKRL 335

Query: 118 N-ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFLRCR 173
                +     + D +E+    +     E+             +  DL   +  P  +  
Sbjct: 336 GHFDYLAQGTLYPDVIESADTNADPQTGERVAVKIKSHHNVGGLPKDLRFKLVEPLRKLF 395

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 396 KDEVRKVGRSIGLP 409


>gi|333029309|ref|ZP_08457370.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides coprosuis DSM
           18011]
 gi|332739906|gb|EGJ70388.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides coprosuis DSM
           18011]
          Length = 371

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 41/191 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    I L           ++             A  E     ++  R
Sbjct: 13  KRVLVGLSGGIDSSATCIMLMEQGYTPIGVTMQVW---------GDAPSEA---KELADR 60

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           L + H +   ++    +     +   R  R             + ++ ++A  +N   I 
Sbjct: 61  LGMEHYIADERDDFKASVVKNFIDEYRSGRTPNPCVMCNPLFKFRILKDYADKLNCQWIA 120

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT--ILYDLNLWISR----PFLRCRREDI 177
           T H          +  +        G     D    L+ L   I      P     + ++
Sbjct: 121 TGHYS-------LLEERNGKVYLLAGRDTKKDQSYFLWRLGQDILSRCMFPLGPFVKTEV 173

Query: 178 RSFLLQRNISW 188
           R +L  +    
Sbjct: 174 REYLKNKGFVH 184


>gi|326794627|ref|YP_004312447.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1]
 gi|326545391|gb|ADZ90611.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1]
          Length = 371

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 119/383 (31%), Gaps = 83/383 (21%)

Query: 21  HILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
            ++V +SGG DS    LL+       +  F K             E        AK+++ 
Sbjct: 11  KVIVGMSGGVDSSVSALLLMQQGYQVEGLFMK----------NWDEDDGTEYCTAKEDLA 60

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAK 115
               VC +L I     ++                 A R          E ++    E+A 
Sbjct: 61  DAQAVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEYAM 120

Query: 116 TINATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            + A  I T H     FD+    + ++   +  ++   L  +    +         P   
Sbjct: 121 ALKADYIATGHYVRKGFDENGNALLLKGLDNNKDQSYFLYAVGKGEIAKTFF----PVGE 176

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             + ++R    + ++                 +    +D      ++  ++F+D      
Sbjct: 177 LEKPEVRRLAEEHDL-----------------ITHNKKDSTG-ICFIGERRFKD------ 212

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFY-LLRVSAAICGGQISLPGY------ 284
                 + +YL      I  +  D +     L+++ + +      GG    P        
Sbjct: 213 -----FLEQYLPAQPGDIETLEGDKIGRHHGLMYHTIGQRQGLGIGGLSKYPDEPWYVVA 267

Query: 285 RSMER-VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQ 343
           + +ER V+   + G+   +    ++ D   NF W+ R   +LP            D    
Sbjct: 268 KDLERNVLQVTQGGQHPSLYKTHLIAD---NFDWVAREKPSLPLTCKAKCRYRQPDQDCT 324

Query: 344 FQNLSDSLIQIGPQSYRKADVPS 366
              L D  I++     ++A  P 
Sbjct: 325 ISELKDGRIEVSFSEPQRAITPG 347


>gi|306835899|ref|ZP_07468893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49726]
 gi|304568224|gb|EFM43795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49726]
          Length = 361

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 41/193 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H----CLRETAK-----DEV 70
            +LVA+SGG DS           +           + +  H      RE A+     ++ 
Sbjct: 2   RVLVAMSGGVDSSV-------AAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDS 54

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHA 114
                +C +L I   V  +     +                        + ++  + +  
Sbjct: 55  ADARRICDKLGIPFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKG 114

Query: 115 KTINATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +    + T H  T DD     YMR  +D  +    + G+      D   +   P    
Sbjct: 115 MALGFDAVATGHYATLDDDG---YMRRSKDENKDQSYVLGVISAEELDHCFF---PIGDT 168

Query: 173 RREDIRSFLLQRN 185
            +  IR       
Sbjct: 169 PKPQIREEAAAHG 181


>gi|262306063|gb|ACY45624.1| gln amidotransferase [Libinia emarginata]
          Length = 194

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++  V    +L+ VSGG DS      LH  L++      +  A+ +D+   R+    E 
Sbjct: 32  YIKEHVGSNKVLMLVSGGVDSTVCAALLHKALAEE-----QVIAVHIDNGFMRKN---ES 83

Query: 71  RYVSDVCSRLRIAHSVVSWK 90
             V     RL +  +VV+ +
Sbjct: 84  LQVEQSLRRLGLKLTVVNAR 103


>gi|262306053|gb|ACY45619.1| gln amidotransferase [Heterometrus spinifer]
          Length = 196

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++  V    +L+ VSGG DS      LH  L +      +  AI +D+   R+    E 
Sbjct: 36  YIKRTVGNNRVLMLVSGGVDSTVCAALLHKALKED-----QVIAIHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           R V     +L +   VV+
Sbjct: 88  RQVEQSLRKLGLKLQVVN 105


>gi|319936217|ref|ZP_08010637.1| GMP synthase [Coprobacillus sp. 29_1]
 gi|319808791|gb|EFW05324.1| GMP synthase [Coprobacillus sp. 29_1]
          Length = 514

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V    +L A+SGG DS    + L   + +      + + + VDH  LR+   DEV
Sbjct: 208 AIREKVGNGKVLCALSGGVDSSVAAVLLSKAIGN------QLTCVFVDHGLLRKNEGDEV 261

Query: 71  R 71
            
Sbjct: 262 E 262


>gi|260427551|ref|ZP_05781530.1| GMP synthase [Citreicella sp. SE45]
 gi|260422043|gb|EEX15294.1| GMP synthase [Citreicella sp. SE45]
          Length = 523

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS    I LH  + D      + + + VDH  LR     E  
Sbjct: 219 IREQVGDKKVICALSGGVDSSVTGILLHEAIGD------QLTCVFVDHGLLRLN---EAE 269

Query: 72  YVSDVCS---RLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
            V  +      L + H+  S  +  +          R+    L  +  +        A  
Sbjct: 270 QVVSMFRDNYNLNLIHADESDLFLGALEGVSDPETKRKTIGKLFIDVFQKYADQIEGAEF 329

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 330 LAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALG 386

Query: 182 LQRNIS 187
            +  + 
Sbjct: 387 HELGLP 392


>gi|332685756|ref|YP_004455530.1| GMP synthase [Melissococcus plutonius ATCC 35311]
 gi|332369765|dbj|BAK20721.1| GMP synthase (glutamine-hydrolyzing) [Melissococcus plutonius ATCC
           35311]
          Length = 521

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E +
Sbjct: 217 IREKVVDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKN---EAK 267

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  +            P+        E  Y       + A    
Sbjct: 268 QVMESLGGKFGLNIIKVDAQKRFLDLLKGIEDPEKKRKIIGNEFVYVFDDEAKKLAGQKG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D++  +  P     ++++R
Sbjct: 328 IDFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMHFELIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|325968952|ref|YP_004245144.1| GMP synthase domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708155|gb|ADY01642.1| GMP synthase domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 380

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 72/198 (36%), Gaps = 33/198 (16%)

Query: 3   LSPIESVRFFVRSLVYPAHI---LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +S I+ V   +RSL    HI   L A+SGG DS        ++L+ R  G  +  A+ +D
Sbjct: 9   ISAIDKVIENMRSL----HINCALAAISGGVDSTT-----AAILTRRIIGD-RLRAVFID 58

Query: 60  HCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAA------REARYALI 110
               R     E  ++ ++   + +   +++  +   +   GL  A       RE  Y ++
Sbjct: 59  TGFMRLN---EPEHIKEILRAV-LPLEIINASDRFYREMLGLSDAEEKRTRFREVFYTVL 114

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT-ILYDLNLWISRPF 169
           SE AK  +   ++      D +ET      R   +    +               +  P 
Sbjct: 115 SEIAKEYDCDWLVQGTIAPDWIET------RGGIKTQHNVLEQVGIDTASKYGFKLIEPL 168

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++ +R       + 
Sbjct: 169 KDLYKDQVRELAKSLGVP 186


>gi|315149756|gb|EFT93772.1| conserved hypothetical protein TIGR00268 [Enterococcus faecalis
           TX0012]
          Length = 278

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 84/279 (30%), Gaps = 72/279 (25%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLL-IALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            VR L     + VA SGG DS  LL  AL ++ ++         AI V+  L   + DE 
Sbjct: 11  LVRELQKMDKLAVAYSGGIDSSYLLKKALDTLGAE------NVLAIVVNSEL--FSDDEF 62

Query: 71  RYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               D+ + L            +      + P +   +   +  Y  I    +     ++
Sbjct: 63  DKAVDLANGLGANVLGLEMSELADDRIVANNPNSWFYSK--KLLYKTIRSAIQKEGFDVL 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSF 180
                 DD   T +    R   ++G                 +  P    +  + +IR  
Sbjct: 121 ADGMIMDDN--TDFRPGLRARDQEG-----------------VISPLQQAKLYKIEIRQL 161

Query: 181 LLQRNISWC----------------------EDPSNTDDRFER------VRVR--RFVRD 210
                IS                         D     +++ R      VRVR    +  
Sbjct: 162 AKDAGISNWSKVASCSIASRIPYGIKLTRSAIDQIFASEKYLREIGFPIVRVRAHHDLAR 221

Query: 211 IDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           I++     K+    + R K+ + +      Y+T  +   
Sbjct: 222 IEIPE--DKLSLLLENREKIADYLKKQGFNYVTFDLEGF 258


>gi|283478712|emb|CAY74628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia pyrifoliae DSM 12163]
          Length = 384

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNW----------EEDDDEAYCTAAEDL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E +                  A +   
Sbjct: 71  ADAQAVCDKLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|218288250|ref|ZP_03492549.1| GMP synthase, large subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218241609|gb|EED08782.1| GMP synthase, large subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 509

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + I+     +R  V    +LVA+SGG DS      +H  +        + +A+ VDH 
Sbjct: 197 MRNFIDESIASIRERVGDKRVLVAISGGVDSSVAAALVHRAIGH------QLTAMFVDHG 250

Query: 62  -LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYA 108
            LR   +   ++ + D   +L I   VV     +   G +               E    
Sbjct: 251 LLRKGESDSVMQSLRD---KLGID--VVRVDAKERFLGRLEGVTDPERKRKIIGEEFIRV 305

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
              E  +      ++    + D +E         +    +        +  D+   I  P
Sbjct: 306 FEEESERLGPFDYLVQGTLYTDIIE------SGTHTAATIKSHHNVGGLPEDVRFEIIEP 359

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R       ++ 
Sbjct: 360 LRDLFKDEVRRLGEALGLAP 379


>gi|168703909|ref|ZP_02736186.1| hypothetical protein GobsU_30530 [Gemmata obscuriglobus UQM 2246]
          Length = 301

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 37/178 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRL 80
           + VA SGG DS  +  A H  L  R+       A++ D     + A++E+R   ++   +
Sbjct: 31  VAVAFSGGIDSTVVAKAAHLALGTRA------VAVTAD---SPSVARNELRDARELAKLI 81

Query: 81  RIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            I H VV          +K         +   Y  +      +  ++I +    DD    
Sbjct: 82  GIRHVVVRTDEFRNPDYTKNDGSRCYHCKTELYTTVESILPELEVSIIASGANLDD---- 137

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCE 190
                 R     G+  +             +  P       + D+R+      +   +
Sbjct: 138 ------RGDYRPGLLAAAEHS---------VRHPLQDAGFTKADVRALARFWGLPTWD 180


>gi|319954152|ref|YP_004165419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cellulophaga algicola DSM 14237]
 gi|319422812|gb|ADV49921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cellulophaga algicola DSM 14237]
          Length = 396

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 45/200 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISVDHCLRETAKDEVRYVSD- 75
             ++V +SGG DS      L     +             +++         DE  ++ D 
Sbjct: 2   KKVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDTVTI--------SDECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEHA 114
                V  +L I    V       +          A            RE ++ +  + A
Sbjct: 54  NDAMIVAEKLGIPFQTVDLSAEYKERIVDYMFDEYAKGRTPNPDVLCNREIKFDVFMKIA 113

Query: 115 KTINATLIMTAHTF-------DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             + A  + T H          D  ET   +  +    ++   L  +    L        
Sbjct: 114 LQLGADYVATGHYCKKGIIKNSDGSETYQLLAGEDPNKDQSYFLCQLSQEQLAKT----L 169

Query: 167 RPFLRCRREDIRSFLLQRNI 186
            P     + ++R       +
Sbjct: 170 FPVGELLKPEVRRIAAANEL 189


>gi|237745832|ref|ZP_04576312.1| GMP synthase [Oxalobacter formigenes HOxBLS]
 gi|229377183|gb|EEO27274.1| GMP synthase [Oxalobacter formigenes HOxBLS]
          Length = 535

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 28/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR     E +
Sbjct: 220 IRKKVGKDDVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN---EGK 270

Query: 72  YVSD-VCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D     L +    V             + P+       RE      +E  K  NA  
Sbjct: 271 TVMDMFAKNLGVKVIHVDASEQFMSKLADVTDPEEKRKIIGREFVEVFQNEAGKISNAKW 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +     + D +E+          +KG  +        +   LNL +  P     ++++R 
Sbjct: 331 LAQGTIYPDVIESA------GKGKKGQTIKSHHNVGGLPDTLNLQLLEPLRELFKDEVRE 384

Query: 180 FLLQRNIS 187
             L   + 
Sbjct: 385 LGLALGLP 392


>gi|183601501|ref|ZP_02962871.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683957|ref|YP_002470340.1| GMP synthase [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190999|ref|YP_002968393.1| GMP synthase [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196405|ref|YP_002969960.1| GMP synthase [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183219107|gb|EDT89748.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621607|gb|ACL29764.1| GMP synthase glutamine amidotransferase [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249391|gb|ACS46331.1| bifunctional GMP synthase/glutamineamidotransferase protein
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250959|gb|ACS47898.1| bifunctional GMP synthase/glutamineamidotransferase protein
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178740|gb|ADC85986.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295793988|gb|ADG33523.1| bifunctional GMP synthase/glutamineamidotransferase protein
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 520

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 31/203 (15%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
            + I+     +R  V  A ++  +SGG DS      +H  + D      + + + VDH  
Sbjct: 199 RNIIDEQVAAIREKVGDARVICGLSGGVDSAVAAALVHRAIGD------QLTCVFVDHGL 252

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REA 105
           LR+   ++V++  D  +   I    V          K  +                  +A
Sbjct: 253 LRKGEAEQVKH--DFVAATGIKLIAVDASKDFLDALKGVSDPETKRKIIGEKFIRTFEKA 310

Query: 106 RYALISEHAKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           +  +I E          +   T   D +E+             +        +  D+   
Sbjct: 311 QRQVIEEAGAQGKEVKFLVQGTLYPDVVES-----GGGDGASNIKSHHNVGGLPDDIKFE 365

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++R+   +  + 
Sbjct: 366 LIEPLRSLFKDEVRAIGTELGLP 388


>gi|227820050|ref|YP_002824021.1| succinoglycan biosynthesis regulator [Sinorhizobium fredii NGR234]
 gi|75440536|sp|Q6W2G5|QUEC_RHISN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|36958584|gb|AAQ87052.1| Succinoglycan biosynthesis regulator, ExsB [Sinorhizobium fredii
           NGR234]
 gi|227339049|gb|ACP23268.1| succinoglycan biosynthesis regulator [Sinorhizobium fredii NGR234]
          Length = 236

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 59/192 (30%), Gaps = 37/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++  SGG DS+ L    H + ++          +S D+  R   + E+ + +    RL 
Sbjct: 4   IVI-CSGGLDSVSLA---HRIAAEHEL----LGLLSFDYGQRH--RKELDFAAACAKRLG 53

Query: 82  IAHSVVSWKNSKPQTGLMAAA----------------------REARYALISE-HAKTIN 118
           + H ++  +         A                        R A    I+   A T  
Sbjct: 54  VPHQIIDIREIGRHLTGSALTDDVDVPDGHYAEETMKTTVVPNRNAIMLAIAFGVAATRK 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  +  A    D          R        +        Y  ++ +  P++   + DI 
Sbjct: 114 ADAVAAAVHGGDH---FIYPDCRPGFIDAFQVMQNHALEGYA-DVILYTPYVNVSKADIV 169

Query: 179 SFLLQRNISWCE 190
           +   + +  + E
Sbjct: 170 ADGAKHHTPFAE 181


>gi|225570688|ref|ZP_03779711.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM
           15053]
 gi|225160515|gb|EEG73134.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM
           15053]
          Length = 361

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 46/214 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDHCLRET-------- 65
              ++V +SGG DS      L     D         + +  A+      +E         
Sbjct: 3   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEERAV------QEENGGCCGLS 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYAL 109
           A D+ R V    ++L I + V++++    +                    A  R  ++  
Sbjct: 57  AVDDARRV---AAQLGIPYYVMNFRQEFKEHVIDYFVDEYTHGRTPNPCIACNRYVKWES 113

Query: 110 ISEHAKTINATLIMTAHTFD-DQL--ETVYMRSQR-DYAEKGMGLSGMCDTILYDLNLWI 165
           + + +  I A  I T H    +QL  E   ++    D  ++   L  +    L    +  
Sbjct: 114 LLKRSMDIGADYIATGHYARIEQLPNERYALKVSATDTKDQTYALYNLTQEQLRRTLM-- 171

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
             P     +E+IR       +     P + D  F
Sbjct: 172 --PVGMYEKEEIRRIAGSLGLEVANKPDSQDICF 203


>gi|110834711|ref|YP_693570.1| GMP synthase [Alcanivorax borkumensis SK2]
 gi|123050395|sp|Q0VNF0|GUAA_ALCBS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|110647822|emb|CAL17298.1| GMP synthase (glutamine-hydrolysing) [Alcanivorax borkumensis SK2]
          Length = 523

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           +R  V    +++ +SGG DS  +   LH  + D      + + + VD+ L   +     +
Sbjct: 219 IREQVGTDEVILGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRHQEGDQVM 272

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE---------HAKTINATL 121
                    + +    V  +++        A  E +  +I            +K  NA  
Sbjct: 273 EM---FADNMGVKVIRVDAEDNFLGKLAGEADPEKKRKIIGNTFIDIFDDEASKLQNANW 329

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + +      +        +  D+ L +  P     ++++R   
Sbjct: 330 LAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRKIG 386

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 387 LELGLPY 393


>gi|324324271|gb|ADY19531.1| GMP synthase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 512

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 256 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 ASKLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 367 FKDEVRVLGSELGIP 381


>gi|228983515|ref|ZP_04143723.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776222|gb|EEM24580.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 515

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229119924|ref|ZP_04249181.1| GMP synthase, large subunit [Bacillus cereus 95/8201]
 gi|228663538|gb|EEL19121.1| GMP synthase, large subunit [Bacillus cereus 95/8201]
          Length = 515

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229194645|ref|ZP_04321441.1| GMP synthase, large subunit [Bacillus cereus m1293]
 gi|228588838|gb|EEK46860.1| GMP synthase, large subunit [Bacillus cereus m1293]
          Length = 515

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|239813406|ref|YP_002942316.1| tRNA-specific 2-thiouridylase MnmA [Variovorax paradoxus S110]
 gi|239799983|gb|ACS17050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Variovorax paradoxus S110]
          Length = 369

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 57/200 (28%), Gaps = 44/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               I+V +SGG DS      L     +     +K               D+  Y     
Sbjct: 2   AKQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNW----------EDDDDSEYCSSNI 51

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
                + V   L I    V++                 A R          E ++    +
Sbjct: 52  DFVDAASVADVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTFDDQL-ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---- 167
           HA  + A  I T H    +L ET    + R    KG+  S      L+ LN         
Sbjct: 112 HAMRLGAEKIATGHYARVRLNET----TGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLF 167

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  + 
Sbjct: 168 PVGELHKTEVRRIAEEIGLP 187


>gi|206978313|ref|ZP_03239189.1| GMP synthase [Bacillus cereus H3081.97]
 gi|217957827|ref|YP_002336371.1| GMP synthase [Bacillus cereus AH187]
 gi|222094026|ref|YP_002528078.1| gmp synthase [Bacillus cereus Q1]
 gi|229137099|ref|ZP_04265721.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST26]
 gi|206743481|gb|EDZ54912.1| GMP synthase [Bacillus cereus H3081.97]
 gi|217066941|gb|ACJ81191.1| GMP synthase [Bacillus cereus AH187]
 gi|221238076|gb|ACM10786.1| GMP synthase [Bacillus cereus Q1]
 gi|228646359|gb|EEL02571.1| GMP synthase, large subunit [Bacillus cereus BDRD-ST26]
          Length = 515

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|49476755|ref|YP_034594.1| GMP synthase [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|81397417|sp|Q6HPC6|GUAA_BACHK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49328311|gb|AAT58957.1| GMP synthase [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 515

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|56696977|ref|YP_167339.1| GMP synthase [Ruegeria pomeroyi DSS-3]
 gi|81349738|sp|Q5LRL6|GUAA_SILPO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56678714|gb|AAV95380.1| GMP synthase [Ruegeria pomeroyi DSS-3]
          Length = 519

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    I +H  + D      + + + VDH  LR+    EV 
Sbjct: 215 IREQVGDKKVICGLSGGVDSSVAAILIHEAIGD------QLTCVFVDHGLLRKNEATEV- 267

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
            V        I          +             R+    L  +  +        A  +
Sbjct: 268 -VGMFRDNYNIQLIHADESDLFLGELDGQSDPETKRKIIGKLFIDVFQKHADTIEGAEFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 327 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALGR 383

Query: 183 QRNIS 187
           +  + 
Sbjct: 384 ELGLP 388


>gi|42779372|ref|NP_976619.1| GMP synthase [Bacillus cereus ATCC 10987]
 gi|50400359|sp|Q73ER7|GUAA_BACC1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|42735288|gb|AAS39227.1| GMP synthase [Bacillus cereus ATCC 10987]
          Length = 512

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 256 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 ASKLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 367 FKDEVRVLGSELGIP 381


>gi|30260444|ref|NP_842821.1| GMP synthase [Bacillus anthracis str. Ames]
 gi|47777798|ref|YP_016877.2| GMP synthase [Bacillus anthracis str. 'Ames Ancestor']
 gi|167634217|ref|ZP_02392539.1| GMP synthase [Bacillus anthracis str. A0442]
 gi|218901460|ref|YP_002449294.1| GMP synthase [Bacillus cereus AH820]
 gi|254686663|ref|ZP_05150521.1| GMP synthase [Bacillus anthracis str. CNEVA-9066]
 gi|254724731|ref|ZP_05186514.1| GMP synthase [Bacillus anthracis str. A1055]
 gi|254735439|ref|ZP_05193147.1| GMP synthase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254744183|ref|ZP_05201865.1| GMP synthase [Bacillus anthracis str. Kruger B]
 gi|254756031|ref|ZP_05208062.1| GMP synthase [Bacillus anthracis str. Vollum]
 gi|254761681|ref|ZP_05213699.1| GMP synthase [Bacillus anthracis str. Australia 94]
 gi|300119510|ref|ZP_07057062.1| GMP synthase [Bacillus cereus SJ1]
 gi|301051994|ref|YP_003790205.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus anthracis CI]
 gi|44887948|sp|Q81VE0|GUAA_BACAN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738383|sp|B7JM61|GUAA_BACC0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|30253765|gb|AAP24307.1| GMP synthase [Bacillus anthracis str. Ames]
 gi|47551503|gb|AAT29352.2| GMP synthase [Bacillus anthracis str. 'Ames Ancestor']
 gi|167530531|gb|EDR93246.1| GMP synthase [Bacillus anthracis str. A0442]
 gi|218540109|gb|ACK92507.1| GMP synthase [Bacillus cereus AH820]
 gi|298723100|gb|EFI63990.1| GMP synthase [Bacillus cereus SJ1]
 gi|300374163|gb|ADK03067.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus cereus biovar anthracis str. CI]
          Length = 512

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 256 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 ASKLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 367 FKDEVRVLGSELGIP 381


>gi|47567509|ref|ZP_00238221.1| GMP synthase [Bacillus cereus G9241]
 gi|49183286|ref|YP_026538.1| GMP synthase [Bacillus anthracis str. Sterne]
 gi|52144972|ref|YP_081857.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus cereus E33L]
 gi|65317699|ref|ZP_00390658.1| COG0519: GMP synthase, PP-ATPase domain/subunit [Bacillus anthracis
           str. A2012]
 gi|118476016|ref|YP_893167.1| GMP synthase [Bacillus thuringiensis str. Al Hakam]
 gi|167640155|ref|ZP_02398422.1| GMP synthase [Bacillus anthracis str. A0193]
 gi|170687797|ref|ZP_02879012.1| GMP synthase [Bacillus anthracis str. A0465]
 gi|170709230|ref|ZP_02899652.1| GMP synthase [Bacillus anthracis str. A0389]
 gi|177655761|ref|ZP_02937036.1| GMP synthase [Bacillus anthracis str. A0174]
 gi|190567444|ref|ZP_03020358.1| GMP synthase [Bacillus anthracis Tsiankovskii-I]
 gi|196036858|ref|ZP_03104246.1| GMP synthase [Bacillus cereus W]
 gi|196041138|ref|ZP_03108434.1| GMP synthase [Bacillus cereus NVH0597-99]
 gi|196046204|ref|ZP_03113431.1| GMP synthase [Bacillus cereus 03BB108]
 gi|225862311|ref|YP_002747689.1| GMP synthase [Bacillus cereus 03BB102]
 gi|227812935|ref|YP_002812944.1| GMP synthase [Bacillus anthracis str. CDC 684]
 gi|228912998|ref|ZP_04076640.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925514|ref|ZP_04088606.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931760|ref|ZP_04094660.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944066|ref|ZP_04106448.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089392|ref|ZP_04220665.1| GMP synthase, large subunit [Bacillus cereus Rock3-42]
 gi|229154027|ref|ZP_04282155.1| GMP synthase, large subunit [Bacillus cereus ATCC 4342]
 gi|229182657|ref|ZP_04309901.1| GMP synthase, large subunit [Bacillus cereus BGSC 6E1]
 gi|229603516|ref|YP_002864893.1| GMP synthase [Bacillus anthracis str. A0248]
 gi|81689732|sp|Q63GV4|GUAA_BACCZ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738382|sp|A0R8W7|GUAA_BACAH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254799668|sp|C3PBL1|GUAA_BACAA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254799669|sp|C3L508|GUAA_BACAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800084|sp|C1EUB4|GUAA_BACC3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|47555911|gb|EAL14250.1| GMP synthase [Bacillus cereus G9241]
 gi|49177213|gb|AAT52589.1| GMP synthase [Bacillus anthracis str. Sterne]
 gi|51978441|gb|AAU19991.1| GMP synthase [Bacillus cereus E33L]
 gi|118415241|gb|ABK83660.1| GMP synthase (glutamine-hydrolyzing) [Bacillus thuringiensis str.
           Al Hakam]
 gi|167511966|gb|EDR87345.1| GMP synthase [Bacillus anthracis str. A0193]
 gi|170125863|gb|EDS94768.1| GMP synthase [Bacillus anthracis str. A0389]
 gi|170668324|gb|EDT19072.1| GMP synthase [Bacillus anthracis str. A0465]
 gi|172079990|gb|EDT65092.1| GMP synthase [Bacillus anthracis str. A0174]
 gi|190561571|gb|EDV15542.1| GMP synthase [Bacillus anthracis Tsiankovskii-I]
 gi|195990540|gb|EDX54520.1| GMP synthase [Bacillus cereus W]
 gi|196022949|gb|EDX61629.1| GMP synthase [Bacillus cereus 03BB108]
 gi|196028073|gb|EDX66684.1| GMP synthase [Bacillus cereus NVH0597-99]
 gi|225787406|gb|ACO27623.1| GMP synthase [Bacillus cereus 03BB102]
 gi|227006016|gb|ACP15759.1| GMP synthase [Bacillus anthracis str. CDC 684]
 gi|228600826|gb|EEK58402.1| GMP synthase, large subunit [Bacillus cereus BGSC 6E1]
 gi|228629447|gb|EEK86146.1| GMP synthase, large subunit [Bacillus cereus ATCC 4342]
 gi|228693941|gb|EEL47631.1| GMP synthase, large subunit [Bacillus cereus Rock3-42]
 gi|228815616|gb|EEM61855.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827909|gb|EEM73643.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834152|gb|EEM79697.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846652|gb|EEM91662.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229267924|gb|ACQ49561.1| GMP synthase [Bacillus anthracis str. A0248]
          Length = 515

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|307151112|ref|YP_003886496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7822]
 gi|306981340|gb|ADN13221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 7822]
          Length = 353

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 53/200 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
            ++V +SGG DS      LH          +   +  G+                  +  
Sbjct: 3   PVVVGLSGGVDSSTAAATLHHQGYEVVGLTLWLMKGKGQCC-----------SEGMVDAA 51

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYA-LISEHA 114
           +   +C +L I H +V  ++   +       +G  A           R  ++  ++    
Sbjct: 52  F---ICEQLGIPHHIVDSRDVFQENIIDYLVSGYEAGITPLPCSQCNRAVKFGPMLRYAR 108

Query: 115 KTINATLIMTAHTFD---DQLETV----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           + +    I T H      D  ET      +R+     ++   L  +   +L         
Sbjct: 109 QELGIDCIATGHYARIRYD--ETTQRYQLLRAVDRNKDQSYFLYDLTQDLLAGT----IF 162

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     +E+ R    +  + 
Sbjct: 163 PLGNQTKEETRRIANEFGLK 182


>gi|258510406|ref|YP_003183840.1| GMP synthase, large subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477132|gb|ACV57451.1| GMP synthase, large subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 509

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 30/200 (15%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + I+     +R  V    +LVA+SGG DS      +H  +        + +A+ VDH 
Sbjct: 197 MRNFIDESIASIRERVGDKRVLVAISGGVDSSVAAALVHRAIGH------QLTAMFVDHG 250

Query: 62  -LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYA 108
            LR   +   ++ + D   +L I   VV     +   G +               E    
Sbjct: 251 LLRKGESDSVMQSLRD---KLGID--VVRVDAKERFLGRLEGVTDPERKRKIIGEEFIRV 305

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
              E  +      ++    + D +E         +    +        +  D+   I  P
Sbjct: 306 FEEESERLGPFDYLVQGTLYTDIIE------SGTHTAATIKSHHNVGGLPEDVRFEIIEP 359

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R       ++ 
Sbjct: 360 LRDLFKDEVRRLGEALGLAP 379


>gi|227825121|ref|ZP_03989953.1| bifunctional GMP synthase/glutamine amidotransferase
           [Acidaminococcus sp. D21]
 gi|226905620|gb|EEH91538.1| bifunctional GMP synthase/glutamine amidotransferase
           [Acidaminococcus sp. D21]
          Length = 515

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 27/188 (14%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V   ++L A+SGG DS    + +H  +        + + + VDH  LR+   D+V
Sbjct: 212 AIREKVGDKNVLCAMSGGVDSSVAAVLVHKAVGK------QLTCVFVDHGLLRKNEGDQV 265

Query: 71  RYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             V      + +       +        S P+        E       E  K  +   ++
Sbjct: 266 EQVFKRDFDMNLIRVDAKERFLSKLKGVSDPEKKRKIIGEEFIRVFEEESKKIGHVDYLV 325

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIRS 179
               + D +E             G             +  D++L +  P     ++++R+
Sbjct: 326 QGTIYPDVVE---------SGGTGTSATIKSHHNVGGLPEDMDLDLIEPLRALFKDEVRA 376

Query: 180 FLLQRNIS 187
              +  I 
Sbjct: 377 VGEELGIP 384


>gi|319426629|gb|ADV54703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella putrefaciens 200]
          Length = 372

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++A  I   H     D  +  T  +R      ++   L  +    +         P  
Sbjct: 122 EILDADYIAMGHYVRRRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    +  +
Sbjct: 178 ELEKHQVREIAKEMGL 193


>gi|152989329|ref|YP_001347945.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PA7]
 gi|205816889|sp|A6V4G0|MNMA_PSEA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150964487|gb|ABR86512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa PA7]
          Length = 375

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 59/193 (30%), Gaps = 38/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS    + L           +K           E        A++++   
Sbjct: 12  RVIVGMSGGVDSSVSALLLQQQGYQVEGLFMK--------NWDEDDGTEYCTAREDLADA 63

Query: 74  SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTI 117
             VC R+ I     +     W N          A           RE ++    ++A  +
Sbjct: 64  QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123

Query: 118 NATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A LI T H     D    T  ++      ++   L  +    +         P     +
Sbjct: 124 GADLIATGHYVRRRDLDGRTELLKGLDPNKDQSYFLHAVGGEQIARS----LFPVGELEK 179

Query: 175 EDIRSFLLQRNIS 187
            ++R+   +  ++
Sbjct: 180 PEVRAIAEKHGLA 192


>gi|120598593|ref|YP_963167.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. W3-18-1]
 gi|166235084|sp|A1RIW8|MNMA_SHESW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120558686|gb|ABM24613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. W3-18-1]
          Length = 372

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++A  I   H     D  +  T  +R      ++   L  +    +         P  
Sbjct: 122 EILDADYIAMGHYVRRRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    +  +
Sbjct: 178 ELEKHQVREIAKEMGL 193


>gi|146293329|ref|YP_001183753.1| tRNA-specific 2-thiouridylase MnmA [Shewanella putrefaciens CN-32]
 gi|166235082|sp|A4Y7M1|MNMA_SHEPC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145565019|gb|ABP75954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella putrefaciens CN-32]
          Length = 372

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNNEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++A  I   H     D  +  T  +R      ++   L  +    +         P  
Sbjct: 122 EILDADYIAMGHYVRRRDNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    +  +
Sbjct: 178 ELEKHQVREIAKEMGL 193


>gi|313893961|ref|ZP_07827527.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441525|gb|EFR59951.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 511

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    +L+A+SGG DS      +   + D      + + I VDH L R+   DEV 
Sbjct: 210 IRNTVGDGKVLLALSGGVDSSVAAALISKAVGD------QLTCIFVDHGLMRKNEGDEVE 263

Query: 72  YV 73
             
Sbjct: 264 AA 265


>gi|303229933|ref|ZP_07316707.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302515299|gb|EFL57267.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 511

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    +L+A+SGG DS      +   + D      + + I VDH L R+   DEV 
Sbjct: 210 IRNTVGDGKVLLALSGGVDSSVAAALISKAVGD------QLTCIFVDHGLMRKNEGDEVE 263

Query: 72  YV 73
             
Sbjct: 264 AA 265


>gi|303231772|ref|ZP_07318494.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302513563|gb|EFL55583.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 511

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    +L+A+SGG DS      +   + D      + + I VDH L R+   DEV 
Sbjct: 210 IRNTVGDGKVLLALSGGVDSSVAAALISKAVGD------QLTCIFVDHGLMRKNEGDEVE 263

Query: 72  YV 73
             
Sbjct: 264 AA 265


>gi|238019870|ref|ZP_04600296.1| hypothetical protein VEIDISOL_01746 [Veillonella dispar ATCC 17748]
 gi|237863394|gb|EEP64684.1| hypothetical protein VEIDISOL_01746 [Veillonella dispar ATCC 17748]
          Length = 517

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    +L+A+SGG DS      +   + D      + + I VDH L R+   DEV 
Sbjct: 216 IRNTVGDGKVLLALSGGVDSSVAAALISKAVGD------QLTCIFVDHGLMRKNEGDEVE 269

Query: 72  YV 73
             
Sbjct: 270 AA 271


>gi|297562935|ref|YP_003681909.1| GMP synthase, large subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847383|gb|ADH69403.1| GMP synthase, large subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 526

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 75/202 (37%), Gaps = 27/202 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++ +E     +R  +    ++ A+SGG DS     A+   L  R+ G  + + + VDH 
Sbjct: 204 MVNIVEEQLERIREDIGDKRVICALSGGVDS-----AVAGALVQRAVGD-QLTCVFVDHG 257

Query: 62  -LRETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA--RY--ALISEHA 114
            LR+   ++V   +V+   ++L++  +   + ++          R+   R    +  + A
Sbjct: 258 LLRKGEAEQVEKDFVAITGAKLKVVDAEERFLSALAGVSDPEEKRKIIGREFIRVFEQAA 317

Query: 115 KTINA---------TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           + + A           ++    + D +E+             +        +  DL   +
Sbjct: 318 REVVAESGETGAEVEFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDLQFTL 372

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     ++++R    +  + 
Sbjct: 373 VEPLRELFKDEVRKVGEELGLP 394


>gi|269797249|ref|YP_003311149.1| GMP synthase, large subunit [Veillonella parvula DSM 2008]
 gi|269093878|gb|ACZ23869.1| GMP synthase, large subunit [Veillonella parvula DSM 2008]
          Length = 511

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    +L+A+SGG DS      +   + D      + + I VDH L R+   DEV 
Sbjct: 210 IRNTVGDGKVLLALSGGVDSSVAAALISKAVGD------QLTCIFVDHGLMRKNEGDEVE 263

Query: 72  YV 73
             
Sbjct: 264 AA 265


>gi|90408225|ref|ZP_01216392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas sp. CNPT3]
 gi|90310671|gb|EAS38789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychromonas sp. CNPT3]
          Length = 369

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 49/199 (24%), Gaps = 51/199 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A  +++  
Sbjct: 8   KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDSSEYCAAAQDLQDA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHAKT 116
             VC +L I    V++              E +                  A +   A+ 
Sbjct: 60  QAVCDKLDIKLHTVNFSAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAED 119

Query: 117 INATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           + A  I T H                    +  R           +       +   +  
Sbjct: 120 LGADFIATGHYVRRREVNGHV---------QLLRGLDTNKDQSYFLYAVGEKQIAQTLF- 169

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + ++R    Q+ +
Sbjct: 170 PVGELEKPEVRRIAEQQGL 188


>gi|84497925|ref|ZP_00996722.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Janibacter sp. HTCC2649]
 gi|84381425|gb|EAP97308.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Janibacter sp. HTCC2649]
          Length = 529

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 33/203 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +ES+   V+  V    +L A+SGG DS      +   + D      + + + VDH  L
Sbjct: 209 NVVESLVEQVKETVGDKRVLCALSGGVDSSVAAALVQRAVGD------QLTCVFVDHGLL 262

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R    ++VR   +  +   +    V  K+         S P+       RE    +  + 
Sbjct: 263 RSGEAEQVR--QEFVAATGVDLVTVDAKDQFLSALAGVSDPEEKRKIIGREF-IRVFEQA 319

Query: 114 AKTINATLIMTAHTFD---------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           A+ +  +     H  +         D +E+             +        +  DL   
Sbjct: 320 ARDVVGSAESDGHPVEFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDLQFK 374

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++R   L+  + 
Sbjct: 375 LVEPLRLLFKDEVRQVGLELGVP 397


>gi|259908739|ref|YP_002649095.1| tRNA-specific 2-thiouridylase MnmA [Erwinia pyrifoliae Ep1/96]
 gi|224964361|emb|CAX55870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia pyrifoliae Ep1/96]
          Length = 369

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNW----------EEDDDEAYCTAAEDL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E +                  A +   
Sbjct: 56  ADAQAVCDKLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|138896133|ref|YP_001126586.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250086|ref|ZP_03148780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. G11MC16]
 gi|166234855|sp|A4IR87|MNMA_GEOTN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134267646|gb|ABO67841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermodenitrificans NG80-2]
 gi|196210270|gb|EDY05035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. G11MC16]
          Length = 371

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 61/199 (30%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
            +   ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YEDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMR-----SQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A +I A  + T H    ++E    R       R           +   +       +  P
Sbjct: 117 AMSIGADYVATGHYA--RVE---FRDGEYKMLRGADPNKDQTYFLNQ-LGQAQLSKVMFP 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ D+R    +  ++
Sbjct: 171 IGHLQKADVRRIAKEAGLA 189


>gi|152964718|ref|YP_001360502.1| GMP synthase [Kineococcus radiotolerans SRS30216]
 gi|151359235|gb|ABS02238.1| GMP synthase, large subunit [Kineococcus radiotolerans SRS30216]
          Length = 547

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 75/200 (37%), Gaps = 27/200 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +++ +    ++ A+SGG DS     A+   L  R+ G  + + + VDH  L
Sbjct: 227 NVIEEQVARIKAQIGDGKVICALSGGVDS-----AVAGALVQRAVGD-QLTCVFVDHGLL 280

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA--RY--ALISEHAKT 116
           R    ++V   +V+    +L +  +V  + ++          R+   R    +  + A+ 
Sbjct: 281 RAGEAEQVEKDFVAATGVKLHVVDAVQRFADALDGVSDPEQKRKIIGREFIRVFEQAARD 340

Query: 117 INA---------TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           + A           ++    + D +E+             +        +  DL   +  
Sbjct: 341 VVAKEGTDGGEVRFLVQGTLYPDVVES-----GGGTGAATIKSHHNVGGLPDDLAFELVE 395

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R+  +Q  + 
Sbjct: 396 PLRALFKDEVRAVGVQLGLP 415


>gi|312891399|ref|ZP_07750916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296093|gb|EFQ73245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mucilaginibacter paludis DSM 18603]
          Length = 362

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 66/247 (26%), Gaps = 74/247 (29%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------------------RSFGKIKFSAIS 57
           +     ILVA+SGG DS    + LH    +                  +  G        
Sbjct: 1   MSKHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGTNTKETGCCSL---- 56

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR-------- 103
                   + ++      +       H ++  ++      +        A R        
Sbjct: 57  -------DSINDA---RALAVGYGFPHYILDIRSEFGDFVIDNFVDEYLAGRTPNPCVLC 106

Query: 104 --EARYALISEHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTI 157
               ++  + + A  ++   I T H  +    D    V  +      ++   L G+    
Sbjct: 107 NTHIKWEALLKRADKLDCEFIATGHYANIRQHDNGRYVISKGLDQNKDQSYVLWGVSQRN 166

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRN------------ISWCEDPSNTDDRFERVRVR 205
           L         P     + +IR                   I +  D     + + R  +R
Sbjct: 167 LARTRF----PLGSFAKAEIRQMAKDMGQLELANKSESYEICFVPD-----NDY-RSFLR 216

Query: 206 RFVRDID 212
             V D++
Sbjct: 217 HKVGDLE 223


>gi|300813340|ref|ZP_07093691.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300512483|gb|EFK39632.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 504

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS      +   + +        + I VDH L R+   DEV 
Sbjct: 204 IRKKVGKGKVLLALSGGVDSSVTAALVSKAIGE------NLTCIFVDHGLMRKNEGDEVE 257

Query: 72  YV 73
             
Sbjct: 258 EA 259


>gi|157813136|gb|ABV81313.1| putative GMP synthetase [Limulus polyphemus]
          Length = 196

 Score = 51.1 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    IE +  F++  V    +L+ VSGG DS      +H     R+ G+ +  AI V++
Sbjct: 26  MHSREIECIE-FIKKTVGDKKVLMLVSGGVDSTVCAALVH-----RALGEERVIAIHVNN 79

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVS 88
              R+    E   V     +L +   VV 
Sbjct: 80  GFMRKN---ESLQVEHSLRQLGLKLRVVD 105


>gi|228989434|ref|ZP_04149422.1| GMP synthase, large subunit [Bacillus pseudomycoides DSM 12442]
 gi|228995630|ref|ZP_04155295.1| GMP synthase, large subunit [Bacillus mycoides Rock3-17]
 gi|229003258|ref|ZP_04161091.1| GMP synthase, large subunit [Bacillus mycoides Rock1-4]
 gi|228757992|gb|EEM07204.1| GMP synthase, large subunit [Bacillus mycoides Rock1-4]
 gi|228764126|gb|EEM13008.1| GMP synthase, large subunit [Bacillus mycoides Rock3-17]
 gi|228770305|gb|EEM18881.1| GMP synthase, large subunit [Bacillus pseudomycoides DSM 12442]
          Length = 515

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            ++      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASRLEGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|212638582|ref|YP_002315102.1| tRNA-specific 2-thiouridylase MnmA [Anoxybacillus flavithermus WK1]
 gi|212560062|gb|ACJ33117.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Anoxybacillus flavithermus WK1]
          Length = 371

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 40/195 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           A ++V +SGG DS    + L         +         +    +        A ++   
Sbjct: 8   ARVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATEDYED 59

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
           V  VC+++ I +  V+++    +           A R          E ++    EHA  
Sbjct: 60  VVRVCNQIGIPYYAVNFEKQYWEKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMA 119

Query: 117 INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           + A  + T H       D  E   +R      ++   L+ +    L      +  P    
Sbjct: 120 LGADYLATGHYARVAYRD-GEYQLLRGLDANKDQTYFLNQLGQAQLSK----VLFPIGEL 174

Query: 173 RREDIRSFLLQRNIS 187
           ++  +R    +  ++
Sbjct: 175 QKSKVREIAKEAGLA 189


>gi|238763559|ref|ZP_04624520.1| GMP synthase [glutamine-hydrolyzing] [Yersinia kristensenii ATCC
           33638]
 gi|238698191|gb|EEP90947.1| GMP synthase [glutamine-hydrolyzing] [Yersinia kristensenii ATCC
           33638]
          Length = 538

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 225 TIIEDAIVRLREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 278

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 279 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLSALAGVDEPEAKRKIIGRVFVELFDEE 335

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 336 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 392

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 393 FKDEVRKIGLELGLPY 408


>gi|238797973|ref|ZP_04641463.1| GMP synthase [glutamine-hydrolyzing] [Yersinia mollaretii ATCC
           43969]
 gi|238718178|gb|EEQ10004.1| GMP synthase [glutamine-hydrolyzing] [Yersinia mollaretii ATCC
           43969]
          Length = 525

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAIVRLREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLSALAGVDEPEAKRKIIGRVFVELFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|229032046|ref|ZP_04188029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1271]
 gi|228729291|gb|EEL80285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1271]
          Length = 376

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L     +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMATEAGLA 194


>gi|229175070|ref|ZP_04302588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus MM3]
 gi|228608438|gb|EEK65742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus MM3]
          Length = 376

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 64/200 (32%), Gaps = 40/200 (20%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L     +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           EHA  + A  + T H       D  E   +R   D  ++   L+ +    L         
Sbjct: 120 EHAIALGADYVATGHYARVAYMD-GEYKMLRGVDDNKDQTYFLNQLSQEQLSKTMF---- 174

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    ++  IR    +  ++
Sbjct: 175 PLGELKKPQIREMATEAGLA 194


>gi|156934382|ref|YP_001438298.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166234851|sp|A7MFV2|MNMA_ENTS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|156532636|gb|ABU77462.1| hypothetical protein ESA_02213 [Cronobacter sakazakii ATCC BAA-894]
          Length = 369

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 39/194 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A  ++  
Sbjct: 7   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMK--------NWEEDDGEDYCTAASDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHAK 115
              VC +L I    V++              E +                  A +   A+
Sbjct: 59  AQAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAE 118

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A  I T H     D   ++  +R      ++   L     T+ +D       P    
Sbjct: 119 DLGADYIATGHYVRRADVDGKSRLLRGLDGNKDQSYFLY----TLGHDQVAQSLFPVGEL 174

Query: 173 RREDIRSFLLQRNI 186
            + ++R    + ++
Sbjct: 175 EKPEVRRIAEELDL 188


>gi|167644970|ref|YP_001682633.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter sp. K31]
 gi|205811623|sp|B0SWD8|MNMA_CAUSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167347400|gb|ABZ70135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter sp. K31]
          Length = 409

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 31/150 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +    +E  R  V  L     I+ A+SGG DS      L     D     ++      DH
Sbjct: 20  LMDRAVEQARAAV-GLPVGTRIVAAMSGGVDSTVTAALLAKAGYDVVGVTLQLY----DH 74

Query: 61  CLRET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-------- 104
                        A  ++        R+ I H V+ +++   +  +   A          
Sbjct: 75  G--AAITKKGACCAGQDILDARMAAERIGIPHYVLDYESRFKEQVIEEFADAYLRGETPI 132

Query: 105 --------ARYALISEHAKTINATLIMTAH 126
                    ++  + + A+ + A  + T H
Sbjct: 133 PCVRCNQTVKFRDLLDVARDLGAEAMATGH 162


>gi|310767364|gb|ADP12314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia sp. Ejp617]
          Length = 369

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNW----------EEDDDEAYCTAAEDL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E +                  A +   
Sbjct: 56  ADAQAVCDKLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|315038064|ref|YP_004031632.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
           1112]
 gi|325956515|ref|YP_004291927.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
 gi|312276197|gb|ADQ58837.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
           1112]
 gi|325333080|gb|ADZ06988.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC]
 gi|327183344|gb|AEA31791.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL
           1118]
          Length = 375

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 40/218 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     + +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDAGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++                  R          + ++    E A  ++
Sbjct: 61  KVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D    T  MR +    ++   LS +    +      +  P     +
Sbjct: 121 ADYIAMGHYAKTVKDANGVTHMMRPKDGNKDQTYFLSQLNQDQIKK----VIFPLANLTK 176

Query: 175 EDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +R   L   ++    +D +      ER   R+F+ +
Sbjct: 177 PQVREIALANGLATAKKKDSTGICFIGERNF-RKFLSE 213


>gi|291557133|emb|CBL34250.1| GMP synthase (glutamine-hydrolyzing) [Eubacterium siraeum V10Sc8a]
          Length = 519

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E+++  +R  V    +L+A+SGG DS      L   + +      + + + VDH   R+ 
Sbjct: 213 EAIKQ-IREKVGDGKVLLALSGGVDSSVACALLSKAVGN------QLTCVFVDHGFMRKN 265

Query: 66  AKDEVRYV 73
             DEV   
Sbjct: 266 EGDEVEQA 273


>gi|291530320|emb|CBK95905.1| GMP synthase (glutamine-hydrolyzing) [Eubacterium siraeum 70/3]
          Length = 519

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E+++  +R  V    +L+A+SGG DS      L   + +      + + + VDH   R+ 
Sbjct: 213 EAIKQ-IREKVGDGKVLLALSGGVDSSVACALLSKAVGN------QLTCVFVDHGFMRKN 265

Query: 66  AKDEVRYV 73
             DEV   
Sbjct: 266 EGDEVEQA 273


>gi|167751537|ref|ZP_02423664.1| hypothetical protein EUBSIR_02538 [Eubacterium siraeum DSM 15702]
 gi|167655345|gb|EDR99474.1| hypothetical protein EUBSIR_02538 [Eubacterium siraeum DSM 15702]
          Length = 519

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E+++  +R  V    +L+A+SGG DS      L   + +      + + + VDH   R+ 
Sbjct: 213 EAIKQ-IREKVGDGKVLLALSGGVDSSVACALLSKAVGN------QLTCVFVDHGFMRKN 265

Query: 66  AKDEVRYV 73
             DEV   
Sbjct: 266 EGDEVEQA 273


>gi|149183668|ref|ZP_01862082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. SG-1]
 gi|148848616|gb|EDL62852.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. SG-1]
          Length = 155

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 47/144 (32%), Gaps = 33/144 (22%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRET 65
           ++       ++V +SGG DS    + L         +         +    +        
Sbjct: 1   MKKEPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT-------- 52

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYAL 109
           A ++   V  VC+++ I +  V+++                A R          E ++  
Sbjct: 53  ATEDYEDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKA 112

Query: 110 ISEHAKTINATLIMTAHTFDDQLE 133
             EHA  + A  + T H    Q+E
Sbjct: 113 FLEHAMKLGADYLATGHYA--QVE 134


>gi|327312420|ref|YP_004327857.1| queuosine biosynthesis protein QueC [Prevotella denticola F0289]
 gi|326944366|gb|AEA20251.1| queuosine biosynthesis protein QueC [Prevotella denticola F0289]
          Length = 230

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 53/193 (27%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +    A+S D+  +     E+ + +  C +L I H 
Sbjct: 20  VSGGLDSITLLY---------DRAETIALAVSFDYG-QNHGAKELPFAAHHCRKLGIPHI 69

Query: 86  VV--SWKNSKPQTGLMAAAR---EARY------------------ALISEHAKTINATLI 122
            +  S+ +   ++ L+  A    E  Y                  A+ +  A++     +
Sbjct: 70  TIPLSFMHRFFKSSLLDGAEAIPEGHYAEENMKSTVVPFRNGIMLAIATGIAESHGLRRV 129

Query: 123 MTAHTFDDQLETV-------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             A+   D   T+       ++++    A  G  +           N+ I  P+    + 
Sbjct: 130 YIANHGGDH--TIYPDCRPDFIQAMDGAATAGTFV-----------NVRIEAPYTNITKA 176

Query: 176 DIRSFLLQRNISW 188
           DI        + +
Sbjct: 177 DIVRRGTALGVDY 189


>gi|268589250|ref|ZP_06123471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rettgeri DSM 1131]
 gi|291315435|gb|EFE55888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Providencia rettgeri DSM 1131]
          Length = 366

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS----- 74
             ++V +SGG DS      L       +   +K               D+  Y S     
Sbjct: 6   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDDTEYCSAAADL 55

Query: 75  ----DVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 56  ADAQAVCDKLGIELHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 116 AEDLGADYIATGHYVRRRDIDGKSQLLRGLDGNKDQSYFLYTLSHEQVAKS----LFPVG 171

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 172 ELEKPEVRRIAEEIGL 187


>gi|228950789|ref|ZP_04112917.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808876|gb|EEM55367.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 515

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229068012|ref|ZP_04201323.1| GMP synthase, large subunit [Bacillus cereus F65185]
 gi|229077613|ref|ZP_04210246.1| GMP synthase, large subunit [Bacillus cereus Rock4-2]
 gi|228705693|gb|EEL58046.1| GMP synthase, large subunit [Bacillus cereus Rock4-2]
 gi|228715115|gb|EEL66979.1| GMP synthase, large subunit [Bacillus cereus F65185]
          Length = 515

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229083547|ref|ZP_04215880.1| GMP synthase, large subunit [Bacillus cereus Rock3-44]
 gi|228699764|gb|EEL52416.1| GMP synthase, large subunit [Bacillus cereus Rock3-44]
          Length = 515

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|206972695|ref|ZP_03233634.1| GMP synthase [Bacillus cereus AH1134]
 gi|206732381|gb|EDZ49564.1| GMP synthase [Bacillus cereus AH1134]
          Length = 512

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V    S    + +       +      G+            E  Y    E
Sbjct: 256 RKG---EAEGVMKTFSEGFHMNVIKVDAKERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 367 FKDEVRVLGSELGIP 381


>gi|313826865|gb|EFS64579.1| NAD+ synthetase [Propionibacterium acnes HL063PA1]
 gi|314979103|gb|EFT23197.1| NAD+ synthetase [Propionibacterium acnes HL072PA2]
 gi|315089649|gb|EFT61625.1| NAD+ synthetase [Propionibacterium acnes HL072PA1]
 gi|327334026|gb|EGE75741.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL096PA3]
          Length = 689

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      DH  
Sbjct: 360 LRRRLESMGSP-KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTMPGFATTDH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDMCRALGIPCEVLDIRPAATQMLKGMSHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|304316499|ref|YP_003851644.1| NAD synthase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778001|gb|ADL68560.1| NAD synthase [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 275

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 46/196 (23%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              E+++ +++ L      ++A SGG DS  L      VL+D         A++      
Sbjct: 5   EKYENLKKYIKQLGSA---VIAFSGGVDSTFLAKVCKDVLND------SCLAVT------ 49

Query: 64  ETA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEH 113
            T+    + E +   ++   + I H ++  +       SK         +   ++ + + 
Sbjct: 50  ATSSTYPEREFKEALELAKEIGIRHKIIKSEELEIEGFSKNPIDRCYYCKSELFSKLKKV 109

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--R 171
           A       ++     DD   T   R  R  A++                L +  P L   
Sbjct: 110 ADDEGIEYVLDGTNADD---TGDFRPGRRAAKE----------------LGVKSPLLECG 150

Query: 172 CRREDIRSFLLQRNIS 187
             ++DIR    +  + 
Sbjct: 151 FTKDDIREMSKRLGLP 166


>gi|189219049|ref|YP_001939690.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Methylacidiphilum infernorum V4]
 gi|189185907|gb|ACD83092.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase
           [Methylacidiphilum infernorum V4]
          Length = 367

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 63/198 (31%), Gaps = 41/198 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAK-----DEVRY 72
            I+V +SGG DS      L     D     +K      + +      +++     D +  
Sbjct: 13  RIVVGMSGGVDSTVAAYLLKREGFDVVGITLKIWTDRCMHI------SSEKCCGPDAIND 66

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKT 116
             ++ +++ I H V+   +   +  +    RE                 ++  +    ++
Sbjct: 67  ARNMAAQIGIPHYVLDEADCFEKEVISYFLREYSLGRTPNPCVKCNEKIKFGRLWTRVQS 126

Query: 117 INATLIMTAHTFDDQLETV-----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
                + T H     +E         +++    ++   L  +    L  +      P   
Sbjct: 127 WGVEYLATGHYA--LVENQDHIPRLKKAKDKRRDQSYFLFSLSAGQLSRM----ITPLGN 180

Query: 172 CRREDIRSFLLQRNISWC 189
             ++++R+   +  ++  
Sbjct: 181 LEKKEVRAIAKEAGLNVW 198


>gi|85709728|ref|ZP_01040793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. NAP1]
 gi|85688438|gb|EAQ28442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erythrobacter sp. NAP1]
          Length = 390

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 63/207 (30%), Gaps = 50/207 (24%)

Query: 15  SLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET--- 65
            L  PA    I+VA+SGG DS  +        ++     ++      D+     R+    
Sbjct: 22  DLPRPASECRIVVAMSGGVDSSVVAALAADTGAEVIGITLQLY----DYGAATGRKGACC 77

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL---------------- 109
           A D++     V  RL IAH V   +++  +  +   A E                     
Sbjct: 78  AGDDIADARAVSDRLGIAHYVFDHESAFREDVVEQFADEYLAGRTPVPCIRCNMGPKFTD 137

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------Y 159
           +   A+ + A  + T H             +R  AE G  L    D              
Sbjct: 138 LFRMARELGADCLATGH-----------YVRRVEAEGGPHLYRANDPSRDQSYFLYATTQ 186

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNI 186
           +   +I  P     +  +R       +
Sbjct: 187 EQLDFIRFPLGGLPKTKVRELAEAAGL 213


>gi|91976746|ref|YP_569405.1| GMP synthase [Rhodopseudomonas palustris BisB5]
 gi|91683202|gb|ABE39504.1| GMP synthase (glutamine-hydrolyzing) [Rhodopseudomonas palustris
           BisB5]
          Length = 556

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + + VDH  LR   KDE +
Sbjct: 252 IRAQVGQGKVICGLSGGVDSAVAAVLIHEAIGD------QLTCVFVDHGLLR---KDEGK 302

Query: 72  YVSDVCSRL-RIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
            V D+      I    V    ++  +          R+    L  +           A  
Sbjct: 303 SVVDLFRHHYNIPLVHVDAADTFLGALKGVTDPEQKRKIIGKLFIDVFDAEAKVVGGADF 362

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   +N+ +  P     ++++R+  
Sbjct: 363 LAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRALG 419

Query: 182 LQRNIS 187
            +  + 
Sbjct: 420 RELGLP 425


>gi|329667542|gb|AEB93490.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii DPC 6026]
          Length = 375

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 40/218 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V   + I +  ++++    +             R          E ++    + A  ++
Sbjct: 61  KVADEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      DD      MR +    ++   LS +      D    +  P     +
Sbjct: 121 ADYIAMGHYAATRVDDNGVVHMMRPKDGNKDQTYFLSQLSQ----DQLKKVIFPLANLTK 176

Query: 175 EDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +R   +   ++    +D +      ER   R+F+ +
Sbjct: 177 PQVREIAIASGLATAKKKDSTGICFIGERNF-RKFLSE 213


>gi|268319690|ref|YP_003293346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii FI9785]
 gi|262398065|emb|CAX67079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii FI9785]
          Length = 375

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 40/218 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V   + I +  ++++    +             R          E ++    + A  ++
Sbjct: 61  KVADEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      DD      MR +    ++   LS +      D    +  P     +
Sbjct: 121 ADYIAMGHYAATRVDDNGVVHMMRPKDGNKDQTYFLSQLSQ----DQLKKVIFPLANLTK 176

Query: 175 EDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +R   +   ++    +D +      ER   R+F+ +
Sbjct: 177 PQVREIAIASGLATAKKKDSTGICFIGERNF-RKFLSE 213


>gi|220929615|ref|YP_002506524.1| GMP synthase [Clostridium cellulolyticum H10]
 gi|259647674|sp|B8I4P0|GUAA_CLOCE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|219999943|gb|ACL76544.1| GMP synthase, large subunit [Clostridium cellulolyticum H10]
          Length = 511

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 25/198 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  V    +L A+SGG DS    + +H  +        + + I VDH  L
Sbjct: 200 SFVENSINAIREKVGDKKVLCALSGGVDSSVAAVLIHKAIGK------QLTCIFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R+   D+V  +     +  I    V+ ++         S P+T       E       E 
Sbjct: 254 RKYEGDQVEQIFR--KQYDINLIRVNCEDRFLQRLKGVSDPETKRKIIGEEFIRVFEDEA 311

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K      ++    + D +E+    +    +   +G  G+ + + +     I  P     
Sbjct: 312 KKIGKVDFLVQGTIYPDVIESGIGDAAVIKSHHNVG--GLPEHVDFK---EIIEPLRSLF 366

Query: 174 REDIRSFLLQRNISWCED 191
           ++++R    +  I   ED
Sbjct: 367 KDEVRRAGEELGIP--ED 382


>gi|78485956|ref|YP_391881.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thiomicrospira crunogena XCL-2]
 gi|91206836|sp|Q31F66|GUAA_THICR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78364242|gb|ABB42207.1| GMP synthase (glutamine-hydrolyzing) [Thiomicrospira crunogena
           XCL-2]
          Length = 526

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 13/83 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           +R  V    +L+ +SGG DS  +   LH  + D      + + + VDH L   +     +
Sbjct: 222 IRQQVGSDEVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDHGLLRHQEGDQVM 275

Query: 71  RYVSDVCSRLRIAHSVVSWKNSK 93
                    + I   V+      
Sbjct: 276 SM---FAENMGIK--VIRVDAED 293


>gi|313813912|gb|EFS51626.1| NAD+ synthetase [Propionibacterium acnes HL025PA1]
          Length = 689

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      DH  
Sbjct: 360 LRRRLESMGSP-KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTMPGFATTDH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDMCRALGIPCEVLDIRPAATQMLKGMSHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|295425130|ref|ZP_06817835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295065189|gb|EFG56092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 375

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 71/221 (32%), Gaps = 40/221 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     + +        TA ++  
Sbjct: 5   KKKRVVVGMSGGVDSSVSALLLKQQGYDVIGVFMKNWDDTDDAGVC-------TATEDYE 57

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
            V  V  ++ I +  ++++                  R          + ++    E A 
Sbjct: 58  DVKKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAM 117

Query: 116 TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            ++A  I   H      D+      MR +    ++   LS +    +      +  P   
Sbjct: 118 DLDADYIAMGHYAKTVKDENGIVHMMRPKDGNKDQTYFLSQLSQEQIKK----VIFPLAD 173

Query: 172 CRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +  +R   L   ++    +D +      ER   R+F+ +
Sbjct: 174 LTKPQVREIALANGLATAKKKDSTGICFIGERNF-RKFLSE 213


>gi|257052580|ref|YP_003130413.1| argininosuccinate synthase [Halorhabdus utahensis DSM 12940]
 gi|256691343|gb|ACV11680.1| argininosuccinate synthase [Halorhabdus utahensis DSM 12940]
          Length = 404

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 45/186 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             + +A SGG D+   +  L        +G      ++VD    +   DE     +    
Sbjct: 8   GTVALAFSGGLDTTVCVPLLKE-----EYGYDDVIGVTVDVGQPDYEFDEAE---ETAEA 59

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYA---------------LISEHAKTINATLIMT 124
           L + H VV  + +     L A    A Y                 I++ A+    +    
Sbjct: 60  LGLDHYVVDAREAFADLCLQAVEANADYQGYPLGTALARPVIAEGIADVAREQGCS--AL 117

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDIRSFL 181
           AH                    G G   +  + +  D ++ +  P   L   RE    + 
Sbjct: 118 AH-----------------GCTGKGNDQLRFEAVWRDTDMDVIAPIRELGLTREWENEYA 160

Query: 182 LQRNIS 187
            ++ + 
Sbjct: 161 EEKGLP 166


>gi|257052111|ref|YP_003129944.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halorhabdus utahensis DSM 12940]
 gi|256690874|gb|ACV11211.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Halorhabdus utahensis DSM 12940]
          Length = 276

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 38/197 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + +      L     +LVA SGG DS  +       L       +  +A       R   
Sbjct: 10  DKLAAARADLAERDGVLVAFSGGVDSSVVAAIAEDAL---GADAVACTA-------RSET 59

Query: 67  --KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAKTIN 118
             + E++    V   + I H +V +   + +  +          R  R + + + AK ++
Sbjct: 60  LPEAELQEAKRVAEEIGIRHDIVEFSELESEAFIENDGDRCYHCRSMRLSAMYDRAKELD 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRRED 176
              +       D  E                  G    +     L  + P L     +E+
Sbjct: 120 IETVCDGTNAADPGE------------------GHRPGLQAVEELDATSPLLEHDITKEE 161

Query: 177 IRSFLLQRNISWCEDPS 193
           +R      ++S  E PS
Sbjct: 162 VREIADHYDLSVAEKPS 178


>gi|113969944|ref|YP_733737.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-4]
 gi|123029751|sp|Q0HJT7|MNMA_SHESM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113884628|gb|ABI38680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. MR-4]
          Length = 372

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNDEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
               VC +L I    V++                 A R          E ++    + A 
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFAD 121

Query: 116 TI-NATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            I +A  I   H     D  +  T  +R   +  ++   L  +    +         P  
Sbjct: 122 DILDADYIAMGHYVRRRDNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 178 ELEKHEVREIAKKMGL 193


>gi|117920194|ref|YP_869386.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. ANA-3]
 gi|166235083|sp|A0KW11|MNMA_SHESA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117612526|gb|ABK47980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. ANA-3]
          Length = 372

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNDEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
               VC +L I    V++                 A R          E ++    + A 
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFAD 121

Query: 116 TI-NATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            I +A  I   H     D  +  T  +R   +  ++   L  +    +         P  
Sbjct: 122 DILDADYIAMGHYVRRRDNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 178 ELEKHEVREIAKKMGL 193


>gi|114047179|ref|YP_737729.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-7]
 gi|122944742|sp|Q0HW33|MNMA_SHESR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113888621|gb|ABI42672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella sp. MR-7]
          Length = 372

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 56/196 (28%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNDEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
               VC +L I    V++                 A R          E ++    + A 
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFAD 121

Query: 116 TI-NATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            I +A  I   H     D  +  T  +R   +  ++   L  +    +         P  
Sbjct: 122 DILDADYIAMGHYVRRRDNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 178 ELEKHEVREIAKKMGL 193


>gi|326430758|gb|EGD76328.1| GMP synthase [Salpingoeca sp. ATCC 50818]
          Length = 662

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R LV    +LV VSGG DS      L+  L     G  +  A+ +D+   R    DE +
Sbjct: 206 IRRLVGKKSVLVMVSGGVDSAVCAALLNKAL-----GPQRVIALHIDNGFMR---LDESK 257

Query: 72  YVSDVCSRLRIAHSVVS 88
            V     RL +   V+ 
Sbjct: 258 QVKVSLERLGLPLHVID 274


>gi|300087159|ref|YP_003757681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526892|gb|ADJ25360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 359

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 63/201 (31%), Gaps = 41/201 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-------------DHCLRETAK 67
            ILVA+SGG DS     A+ + L+  S   +    +++               C     +
Sbjct: 4   KILVALSGGVDS-----AVAAALAQESGYDVTGIIMTIYDGPESPNEKSHKHGCYGPGEE 58

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALIS 111
           ++V+    V   L I   V   KN      L +   E R                   + 
Sbjct: 59  EDVKDAEAVAQHLGIKLQVFDLKNEYRTNILESFKNEYRAGRTPNPCVYCNQQIKLGALL 118

Query: 112 EHAKTINAT--LIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           + A+        + T H    D   ++   R  R           +  + L    L I R
Sbjct: 119 DKARESGLDFEFVFTGHYARTDFHHQSNRYRLLRARYHNKDQSYFL--SRLSQAQLRILR 176

Query: 168 -PFLRCRREDIRSFLLQRNIS 187
            P     ++++R    + N+ 
Sbjct: 177 FPLGDLSKDEVRKLAERINLP 197


>gi|288818711|ref|YP_003433059.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Hydrogenobacter thermophilus TK-6]
 gi|288788111|dbj|BAI69858.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Hydrogenobacter thermophilus TK-6]
 gi|308752298|gb|ADO45781.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Hydrogenobacter thermophilus TK-6]
          Length = 354

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 48/201 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-----SVDHCLR-ETAKDEVRYVS 74
            + V +SGG DS    + L     +     ++F  I     + D  LR   + ++V+  +
Sbjct: 2   RVAVGMSGGVDSSVSALLLKMAGHEVIGVTLRFHTIPESCSTDD--LRVCCSPEDVKDAA 59

Query: 75  DVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKTI- 117
            V  +L I H    W+                        A   R+ +   ++ + + + 
Sbjct: 60  KVSEKLGIPHITFDWERIFKERVIDYFVQEYAEGKTPNPCAICNRDVKTGFLARYLREVA 119

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---------- 167
               + T H              R    KG  L         D + +++           
Sbjct: 120 QVDRLATGHYA------------RLVEYKGKRLIARAKDKSKDQSYFLALVRKKDLELLE 167

Query: 168 -PFLRCRREDIRSFLLQRNIS 187
            P     +E +R   ++ ++ 
Sbjct: 168 FPLGDLTKEQVRRIAVEYSLP 188


>gi|251798293|ref|YP_003013024.1| exsB protein [Paenibacillus sp. JDR-2]
 gi|247545919|gb|ACT02938.1| exsB protein [Paenibacillus sp. JDR-2]
          Length = 221

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 32/131 (24%)

Query: 16  LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           +     ++V  SGG DS   L  AL            +  A++ ++  R     E+   +
Sbjct: 1   MKKGKAVVV-FSGGQDSTTCLFWALERYE--------EVEAVTFNYGQRH--ALELECAA 49

Query: 75  DVCSRLRIAHSVVSW---------KNSKPQTGLMAA----------AREARY-ALISEHA 114
            +   L + H V+             ++P   +              R   + +  +  A
Sbjct: 50  QIAEELGVRHHVLDMSLLNQLAPNALTRPDIEIEQQEGGLPTTFVDGRNLLFLSFAAVLA 109

Query: 115 KTINATLIMTA 125
           K I A  I+T 
Sbjct: 110 KQIGARAIVTG 120


>gi|167759055|ref|ZP_02431182.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704]
 gi|167663462|gb|EDS07592.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704]
          Length = 361

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 66/221 (29%), Gaps = 60/221 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALH------------------SVLSDRSFGKIKFSAISVDH 60
              ++V +SGG DS      L                    ++ +   G    SA+    
Sbjct: 3   KKKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEERIVEEEQGGCCGLSAV---- 58

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAA-RE 104
                  D+ R V    + L I + V+++K                         A  R 
Sbjct: 59  -------DDARRV---AASLGIPYYVMNFKQEFKTYVIDYFMDEYLHGRTPNPCIACNRY 108

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRS------QRDYAEKGMGLSGMCDTIL 158
            ++  + + +  I A  I T H    ++E    R        R  A      +    ++ 
Sbjct: 109 VKWESLLKRSMEIGADYIATGHYA--RIE----RLGNGRCSLRTSAASAKDQTYALYSLT 162

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            +       P     +++IR    +  ++  + P + D  F
Sbjct: 163 QEQLKRTLMPVGEYTKDEIRKLAGKIGLNVADKPDSQDICF 203


>gi|22125262|ref|NP_668685.1| GMP synthase [Yersinia pestis KIM 10]
 gi|45442508|ref|NP_994047.1| GMP synthase [Yersinia pestis biovar Microtus str. 91001]
 gi|108808305|ref|YP_652221.1| GMP synthase [Yersinia pestis Antiqua]
 gi|108811431|ref|YP_647198.1| GMP synthase [Yersinia pestis Nepal516]
 gi|145599487|ref|YP_001163563.1| GMP synthase [Yersinia pestis Pestoides F]
 gi|149365330|ref|ZP_01887365.1| putative GMP synthase [Yersinia pestis CA88-4125]
 gi|162420748|ref|YP_001605014.1| GMP synthase [Yersinia pestis Angola]
 gi|165925969|ref|ZP_02221801.1| GMP synthase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937037|ref|ZP_02225602.1| GMP synthase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008131|ref|ZP_02229029.1| GMP synthase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212257|ref|ZP_02238292.1| GMP synthase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398814|ref|ZP_02304338.1| GMP synthase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421428|ref|ZP_02313181.1| GMP synthase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423295|ref|ZP_02315048.1| GMP synthase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|218929930|ref|YP_002347805.1| GMP synthase [Yersinia pestis CO92]
 gi|229838446|ref|ZP_04458605.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895147|ref|ZP_04510323.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis
           Pestoides A]
 gi|229899013|ref|ZP_04514157.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901691|ref|ZP_04516813.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis
           Nepal516]
 gi|270489885|ref|ZP_06206959.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Yersinia pestis KIM D27]
 gi|294504567|ref|YP_003568629.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Yersinia pestis Z176003]
 gi|24211757|sp|Q8ZCU4|GUAA_YERPE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123072717|sp|Q1C5J6|GUAA_YERPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123073463|sp|Q1CK82|GUAA_YERPN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739773|sp|A9R7Z2|GUAA_YERPG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739774|sp|A4TMS8|GUAA_YERPP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21958134|gb|AAM84936.1|AE013739_2 GMP synthetase (glutamine-hydrolyzing) [Yersinia pestis KIM 10]
 gi|45437373|gb|AAS62924.1| putative GMP synthase [Yersinia pestis biovar Microtus str. 91001]
 gi|108775079|gb|ABG17598.1| GMP synthase (glutamine-hydrolyzing) [Yersinia pestis Nepal516]
 gi|108780218|gb|ABG14276.1| GMP synthase (glutamine-hydrolyzing) [Yersinia pestis Antiqua]
 gi|115348541|emb|CAL21481.1| putative GMP synthase [Yersinia pestis CO92]
 gi|145211183|gb|ABP40590.1| GMP synthase (glutamine-hydrolyzing) [Yersinia pestis Pestoides F]
 gi|149291743|gb|EDM41817.1| putative GMP synthase [Yersinia pestis CA88-4125]
 gi|162353563|gb|ABX87511.1| GMP synthase [Yersinia pestis Angola]
 gi|165914900|gb|EDR33512.1| GMP synthase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922173|gb|EDR39350.1| GMP synthase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992513|gb|EDR44814.1| GMP synthase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206188|gb|EDR50668.1| GMP synthase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960917|gb|EDR56938.1| GMP synthase [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051318|gb|EDR62726.1| GMP synthase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057465|gb|EDR67211.1| GMP synthase [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229681620|gb|EEO77714.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis
           Nepal516]
 gi|229687958|gb|EEO80030.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694812|gb|EEO84859.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701909|gb|EEO89932.1| GMP synthetase (glutamine aminotransferase) [Yersinia pestis
           Pestoides A]
 gi|262362438|gb|ACY59159.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Yersinia pestis D106004]
 gi|262366555|gb|ACY63112.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Yersinia pestis D182038]
 gi|270338389|gb|EFA49166.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Yersinia pestis KIM D27]
 gi|294355026|gb|ADE65367.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Yersinia pestis Z176003]
 gi|320016003|gb|ADV99574.1| GMP synthase [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 525

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAIVRLREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLSALTGVDEPEAKRKIIGRVFVELFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|114766398|ref|ZP_01445367.1| GMP synthase [Pelagibaca bermudensis HTCC2601]
 gi|114541339|gb|EAU44387.1| GMP synthase [Roseovarius sp. HTCC2601]
          Length = 521

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS    I LH  + D      + + + VDH  LR     E  
Sbjct: 217 IREQVGDKQVICALSGGVDSSVTGILLHEAIGD------QLTCVFVDHGLLRLN---EAE 267

Query: 72  YVSDVCS---RLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
            V  +      L + H+  S  +  +          R+    L  +  +        A  
Sbjct: 268 QVVSMFRDNYNLNLIHADESELFLGALEGVSDPETKRKTIGKLFIDVFQKYADQIEGAEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 328 LAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRALG 384

Query: 182 LQRNIS 187
            +  + 
Sbjct: 385 HELGLP 390


>gi|312898012|ref|ZP_07757421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera micronuciformis F0359]
 gi|310620937|gb|EFQ04488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera micronuciformis F0359]
          Length = 358

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 42/210 (20%)

Query: 22  ILVAVSGGSDSMGLLIALH-----------SVLSDRSFGKIK--FSAISVDHCLRETAKD 68
           I VA+SGG DS      L             +  +    K++    A          + +
Sbjct: 5   IAVAMSGGVDSSVTAGLLKEQGYEVIGITLRLWEEEPACKVERNIHACC-----SLDSVN 59

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAA-REARYALISE 112
           + + V+DV   L I H  + +++                        A  R  ++ L+ +
Sbjct: 60  DAKAVADV---LGIRHYTLDFRDVFRHDVIDYFIDSYAHGKTPNPCIACNRFIKFGLLWD 116

Query: 113 HAKTINATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            A+   A L+ T H      D  E      +R   E+      +   +  DL   I  P 
Sbjct: 117 QAQQFGADLLATGHYARIVYDN-ERKIYTLRRGKDERKDQSYVLYQ-LTQDLLKHIIFPM 174

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
               +   R    +  +     P + D  F
Sbjct: 175 ADLEKTKTRELAKEWGLPVFNKPESQDICF 204


>gi|330995299|ref|ZP_08319209.1| GMP synthase domain protein [Paraprevotella xylaniphila YIT 11841]
 gi|329575794|gb|EGG57318.1| GMP synthase domain protein [Paraprevotella xylaniphila YIT 11841]
          Length = 525

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 73/193 (37%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 216 SFVDTTVAELKAQLGDDRVILGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 269

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
           R+     V +  D  C  L +     S K        + P+       R+      +E  
Sbjct: 270 RKNEFKNVLH--DYECLGLNVIGVDASAKFFKDLEGVTDPEQKRKIIGRDFVEVFDAEAR 327

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  +A  +     + D++E+  +       +    + G+ +    ++NL +  P     +
Sbjct: 328 KITDAKWLAQGTIYPDRIES--LNITGKTIKSHHNVGGLPE----EMNLQLCEPLKWLFK 381

Query: 175 EDIRSFLLQRNIS 187
           +++R    Q  + 
Sbjct: 382 DEVRRVGRQMGMP 394


>gi|189460624|ref|ZP_03009409.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136]
 gi|189432583|gb|EDV01568.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136]
          Length = 374

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 60/201 (29%), Gaps = 46/201 (22%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR------------ 63
           +     ILV +SGG DS    I L            +   ++    +R            
Sbjct: 1   MEKEKRILVGMSGGIDSSATCIMLQE-------QGYEVVGVT----MRTWDIPSHFSTPE 49

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAARE----------ARY 107
           +   DE+     +  RL I H V   +       +          R            + 
Sbjct: 50  QEQPDEILEAKALAERLGIEHHVADVREEFRNVIVQYFIDEYMKGRTPNPCVMCNPLFKE 109

Query: 108 ALISEHAKTINATLIMTAH--TFDDQLE-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            ++ E A       I T H    +D+ E    +       ++   L  +   IL  +   
Sbjct: 110 RILCEWADRTGCAQIATGHYCRLEDRKEHRYIVTGDDPTKDQSYFLWKLPQEILKRM--- 166

Query: 165 ISRPFLRCRREDIRSFLLQRN 185
              P     + ++R++L ++ 
Sbjct: 167 -VFPLGGMTKTEVRAYLAEKG 186


>gi|116072337|ref|ZP_01469604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. BL107]
 gi|116064859|gb|EAU70618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. BL107]
          Length = 389

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 57/205 (27%), Gaps = 37/205 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLR 63
           E+    +R       + V +SGG DS      L     +     +             L 
Sbjct: 12  EAALTRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSGKGACCAEGLV 71

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARY 107
           + A         +C +L I H VV  + +  +  +                    R  ++
Sbjct: 72  DAAG--------ICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCNRSVKF 123

Query: 108 ALISEHAKTI-NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
             + E AK   +   I T H        D+     +R      ++   L  +    L   
Sbjct: 124 GPMLEWAKQERHLPRIATGHYARIRHGGDRGRHQLLRGLDSRKDQSYFLYDLPQEAL--- 180

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI 186
              I  P     + D R    +  +
Sbjct: 181 -GRIVFPLGELTKADTRIEAGRHGL 204


>gi|315497620|ref|YP_004086424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Asticcacaulis excentricus CB 48]
 gi|315415632|gb|ADU12273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Asticcacaulis excentricus CB 48]
          Length = 402

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 69/207 (33%), Gaps = 30/207 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I  VR  V  L   A ++ A+SGG DS      LH+   +     ++      DH  +
Sbjct: 20  EAIARVRQSV-GLSQGARVVAAMSGGVDSSVAAALLHAAGYEVIGVTLQLY----DHG-Q 73

Query: 64  E-------TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------------- 103
                    A  ++        ++ IAH V+ +++    + +   A              
Sbjct: 74  ALKKTGACCAGQDIHDARVAAEKIGIAHYVLDYESRFKDSVIEEFADSYLRGETPVPCIR 133

Query: 104 ---EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                ++  + + A+ + A  + T H  + + +T      R   ++    S        +
Sbjct: 134 CNQTVKFRDLLDVARDLGAEAMATGHYVE-RRDTGNRAELRRAIDRNRDQSYFLFATTRE 192

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
              ++  P     +  +R    Q  ++
Sbjct: 193 QLDFLRFPLADIPKPQVRDIARQMGLN 219


>gi|194429520|ref|ZP_03062041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B171]
 gi|194412394|gb|EDX28695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B171]
 gi|323163677|gb|EFZ49499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E128010]
          Length = 368

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTATADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|323214164|gb|EFZ98924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
          Length = 230

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 4   SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 54  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 113

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 114 FAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 169

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 170 VGELEKPQVRKIAEDLGL 187


>gi|284048040|ref|YP_003398379.1| GMP synthase, large subunit [Acidaminococcus fermentans DSM 20731]
 gi|283952261|gb|ADB47064.1| GMP synthase, large subunit [Acidaminococcus fermentans DSM 20731]
          Length = 514

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   ++L A+SGG DS    + +H  +        + + + VDH  LR+   D+V 
Sbjct: 212 IREKVGDKNVLCAMSGGVDSSVAAVLVHKAVGK------QLTCVFVDHGLLRKDEGDQVE 265

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        +    V+ ++         S P+        E       E  K  +   +
Sbjct: 266 QVFK--RDFDMNLIRVNAQDRFLSKLKGVSDPEKKRKIIGEEFIRVFEEESKKIGHVDFL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDIR 178
           +    + D +E             G             +  D+ L +  P     ++++R
Sbjct: 324 VQGTIYPDVVE---------SGGTGTSATIKSHHNVGGLPKDMKLGLIEPLRELFKDEVR 374

Query: 179 SFLLQRNIS 187
           +   +  I 
Sbjct: 375 AVGEELGIP 383


>gi|146282652|ref|YP_001172805.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri A1501]
 gi|166235074|sp|A4VLW2|MNMA_PSEU5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145570857|gb|ABP79963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas stutzeri A1501]
          Length = 375

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 48/204 (23%)

Query: 15  SLVYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------- 65
           S      ++V +SGG DS    LL+       +  F K             E        
Sbjct: 7   SAPEKTRVIVGMSGGVDSSVSALLLLEQGYQVEGLFMK----------NWEEDDGTEYCT 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYAL 109
           AK+++     VC R+ I     +     W N          A           RE ++  
Sbjct: 57  AKEDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKA 116

Query: 110 ISEHAKTINATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL---- 163
             ++A  + A LI T H     D       R  R    KG+  +      L+ +      
Sbjct: 117 FLDYALMLGADLIATGHYVRRRD-------RDGRSELLKGLDPNKDQSYFLHAVGGEQLA 169

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
               P     + ++R+   + +++
Sbjct: 170 KTLFPVGELEKPEVRAIAEKHSLA 193


>gi|325955195|ref|YP_004238855.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922]
 gi|323437813|gb|ADX68277.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922]
          Length = 397

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 39/135 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYV 73
             ++V +SGG DS      L     +      R++     +            +DE  ++
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMRNWNDASVTL-----------EDECPWI 50

Query: 74  SD------VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALIS 111
            D         +L I   V+    S  +                       RE ++ L  
Sbjct: 51  EDSADALLTAEKLNIPFQVIDMSASYKERIVDYMFAEYEQGRTPNPDVLCNREIKFDLFL 110

Query: 112 EHAKTINATLIMTAH 126
           + A  + A  + T H
Sbjct: 111 KTALELGADYVATGH 125


>gi|314964923|gb|EFT09022.1| GMP synthase protein [Propionibacterium acnes HL082PA2]
          Length = 517

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     +++ R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEARAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|167010288|ref|ZP_02275219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica FSC200]
          Length = 378

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 23  KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 74

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKT 116
              VC  + I    +++                 A R          E ++     +   
Sbjct: 75  AQAVCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 134

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H      +T           KG+  +      LY L     R    P    
Sbjct: 135 LGGDYIATGH----YAQTRLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 190

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 191 EKSKVREIAKENNLVTFDKKDST 213


>gi|115314034|ref|YP_762757.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|254366943|ref|ZP_04982980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica 257]
 gi|115128933|gb|ABI82120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|134252770|gb|EBA51864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica 257]
          Length = 381

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 26  KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 77

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKT 116
              VC  + I    +++                 A R          E ++     +   
Sbjct: 78  AQAVCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 137

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H      +T           KG+  +      LY L     R    P    
Sbjct: 138 LGGDYIATGH----YAQTRLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 193

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 194 EKSKVREIAKENNLVTFDKKDST 216


>gi|89255515|ref|YP_512876.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica LVS]
 gi|156501449|ref|YP_001427514.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954256|ref|ZP_06558877.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312320|ref|ZP_06803107.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|122501358|sp|Q2A5X5|MNMA_FRATH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166234852|sp|A7N9A5|MNMA_FRATF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205821924|sp|Q0BP64|MNMA_FRATO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89143346|emb|CAJ78513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156252052|gb|ABU60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 359

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKT 116
              VC  + I    +++                 A R          E ++     +   
Sbjct: 56  AQAVCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H      +T           KG+  +      LY L     R    P    
Sbjct: 116 LGGDYIATGH----YAQTRLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 171

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 172 EKSKVREIAKENNLVTFDKKDST 194


>gi|314932532|gb|EFS96363.1| NAD+ synthetase [Propionibacterium acnes HL067PA1]
          Length = 689

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      DH  
Sbjct: 360 LRRRLESMGSP-KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTMPGFATTDH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDMCRALGIPCEVLDIRPAATQMLKGMSHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|313808558|gb|EFS47018.1| NAD+ synthetase [Propionibacterium acnes HL087PA2]
 gi|313819098|gb|EFS56812.1| NAD+ synthetase [Propionibacterium acnes HL046PA2]
 gi|313821625|gb|EFS59339.1| NAD+ synthetase [Propionibacterium acnes HL036PA1]
 gi|313823761|gb|EFS61475.1| NAD+ synthetase [Propionibacterium acnes HL036PA2]
 gi|314926101|gb|EFS89932.1| NAD+ synthetase [Propionibacterium acnes HL036PA3]
 gi|314960940|gb|EFT05041.1| NAD+ synthetase [Propionibacterium acnes HL002PA2]
 gi|314985915|gb|EFT30007.1| NAD+ synthetase [Propionibacterium acnes HL005PA2]
 gi|314989225|gb|EFT33316.1| NAD+ synthetase [Propionibacterium acnes HL005PA3]
 gi|315084910|gb|EFT56886.1| NAD+ synthetase [Propionibacterium acnes HL027PA2]
 gi|315087441|gb|EFT59417.1| NAD+ synthetase [Propionibacterium acnes HL002PA3]
 gi|327450400|gb|EGE97054.1| NAD+ synthetase [Propionibacterium acnes HL013PA2]
 gi|328757666|gb|EGF71282.1| NAD+ synthetase [Propionibacterium acnes HL020PA1]
 gi|332676654|gb|AEE73470.1| glutamine-dependent NAD(+) synthase [Propionibacterium acnes 266]
          Length = 689

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      DH  
Sbjct: 360 LRRRLESMGSP-KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTMPGFATTDH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDMCRALGIPCEVLDIRPAATQMLKGMSHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|242279051|ref|YP_002991180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio salexigens DSM 2638]
 gi|242121945|gb|ACS79641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio salexigens DSM 2638]
          Length = 360

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 64/195 (32%), Gaps = 31/195 (15%)

Query: 13  VRSLVYPAHILVAVSGGSD---SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           ++ L     + +AVSGG+D   SM LL                  A+      +E A+  
Sbjct: 10  LKDLAAGRKVAMAVSGGADSLLSMVLL----------KESGADIVAVHGCFLGKEKAEVA 59

Query: 70  VRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEH 113
           V  +   C+ L ++  V      +     +  +    R            E ++ ++ + 
Sbjct: 60  VAGLEKRCAELDVSLHVFDLTAEFDRLVVEPFVQEYLRGNTPNPCALCNPEIKFGVLYKA 119

Query: 114 AKTINATLIMTAHTFDDQLETVYM-RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           A+ +   L+ T H      E     R     A+ G   S     +  D  L    P    
Sbjct: 120 AQELGCDLLGTGHYVR-IAEDARYGRVLARGADMGKDQSYFLSLVPRDSVLNAIFPLGGH 178

Query: 173 RREDIRSFLLQRNIS 187
            ++   + L +R + 
Sbjct: 179 SKDQTYAELDKRGVE 193


>gi|51246022|ref|YP_065906.1| hypothetical protein DP2170 [Desulfotalea psychrophila LSv54]
 gi|50877059|emb|CAG36899.1| hypothetical protein DP2170 [Desulfotalea psychrophila LSv54]
          Length = 294

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 87/257 (33%), Gaps = 40/257 (15%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E  R  ++++     + VA SGG DS  LL A     + ++ G  K   ++V      ++
Sbjct: 32  EKYRRLLQTIKKYPQVAVAFSGGIDSSFLLHA-----ARQALGPSKVHVVTV-----ISS 81

Query: 67  KDEVRYVSD----VCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATL 121
             +  +       +  +   +           Q    +   RE  Y       K      
Sbjct: 82  LQDEFFAKRVDAFLALQFGNSCVAHKLILDPMQWNQFVNNGRERCY-----ICKKNMYRA 136

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGM-----GLSGMCDTILYDLNLWISRPFLRCR--R 174
           + T+ +   Q E V ++      +  +     GL  + +         ++RP       +
Sbjct: 137 LKTSLSSG-QGE-VLIQLLDGTNKSDLEADRPGLQALIEE-------EVARPLAEVGLVK 187

Query: 175 EDIRSFLLQRNISWCEDPSN--TDDRFER-VRV-RRFVRDIDLHALYLKMKKFQDLRVKV 230
            +IR    +  ++     SN     R ER  ++    +  I+    +L+   F   RV+ 
Sbjct: 188 GEIRLLAKKHGLANWNLSSNSCLATRIERGTKISLNLLTSIEQGERFLQGLGFSGCRVQP 247

Query: 231 NNAVAMLIPKYLTVHMR 247
              + +L  +   + + 
Sbjct: 248 RADMVLLQLQEKDIILA 264


>gi|51597148|ref|YP_071339.1| GMP synthase [Yersinia pseudotuberculosis IP 32953]
 gi|153949679|ref|YP_001400177.1| GMP synthase [Yersinia pseudotuberculosis IP 31758]
 gi|170023549|ref|YP_001720054.1| GMP synthase [Yersinia pseudotuberculosis YPIII]
 gi|186896242|ref|YP_001873354.1| GMP synthase [Yersinia pseudotuberculosis PB1/+]
 gi|81638867|sp|Q668A8|GUAA_YERPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739771|sp|A7FFZ9|GUAA_YERP3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739772|sp|B2K9P0|GUAA_YERPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739775|sp|B1JSB0|GUAA_YERPY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|51590430|emb|CAH22070.1| putative GMP synthase [Yersinia pseudotuberculosis IP 32953]
 gi|152961174|gb|ABS48635.1| GMP synthase [Yersinia pseudotuberculosis IP 31758]
 gi|169750083|gb|ACA67601.1| GMP synthase, large subunit [Yersinia pseudotuberculosis YPIII]
 gi|186699268|gb|ACC89897.1| GMP synthase, large subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 525

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAIVRLREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLSALAGVDEPEAKRKIIGRVFVELFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|266619710|ref|ZP_06112645.1| putative NH(3)-dependent NAD(+) synthetase [Clostridium hathewayi
          DSM 13479]
 gi|288868734|gb|EFD01033.1| putative NH(3)-dependent NAD(+) synthetase [Clostridium hathewayi
          DSM 13479]
          Length = 94

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I +A SGG DS  LL A    +        K  A++ D  L  +   E+     V   L 
Sbjct: 24 ICLAFSGGVDSSLLLKAAAEAVKKTGK---KVYAVTFDSRLHPSCDLEIA--RRVAEELG 78

Query: 82 IAHSVVSWKNSKPQ 95
            H V++    + +
Sbjct: 79 GIHEVITVDELEQK 92


>gi|326204361|ref|ZP_08194219.1| GMP synthase, large subunit [Clostridium papyrosolvens DSM 2782]
 gi|325985393|gb|EGD46231.1| GMP synthase, large subunit [Clostridium papyrosolvens DSM 2782]
          Length = 511

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 25/196 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E+    +R  V    +L A+SGG DS    + +H  +        + + I VDH  LR+
Sbjct: 202 VENSIKAIREKVGDKKVLCALSGGVDSSVAAVLIHKAVGK------QLTCIFVDHGLLRK 255

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAK 115
              D+V  +     +  I    V+            S P+T       E       E  K
Sbjct: 256 HEGDQVEQIFR--KQYDINLVRVNCEDRFLDRLKDVSDPETKRKIIGEEFIRVFEDEAKK 313

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 ++    + D +E+    +    +   +G  G+ D + +     I  P     ++
Sbjct: 314 IGKVDFLVQGTIYPDVIESGLGDAAVIKSHHNVG--GLPDHVDFK---EIIEPLRNLFKD 368

Query: 176 DIRSFLLQRNISWCED 191
           ++R    + +I   ED
Sbjct: 369 EVRKAGEELDIP--ED 382


>gi|163815378|ref|ZP_02206753.1| hypothetical protein COPEUT_01543 [Coprococcus eutactus ATCC
          27759]
 gi|158449352|gb|EDP26347.1| hypothetical protein COPEUT_01543 [Coprococcus eutactus ATCC
          27759]
          Length = 230

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   LL AL            K  A+S D+  R     E+    ++  + 
Sbjct: 16 VVV-FSGGQDSTTCLLWALKKYK--------KVYAVSFDYGQRH--ALELECAREIADKF 64

Query: 81 RIAHSVVS 88
           + H ++ 
Sbjct: 65 GVEHHILD 72


>gi|149926560|ref|ZP_01914821.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Limnobacter sp. MED105]
 gi|149824923|gb|EDM84137.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Limnobacter sp. MED105]
          Length = 540

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 67/198 (33%), Gaps = 27/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++     +R+ V    +++ +SGG DS      +H  + D      + + + VDH  L
Sbjct: 208 SFVDEAVERIRAQVGTDEVILGLSGGVDSSVAAALIHKAIGD------QLTCVFVDHGLL 261

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAREARYALISEHAK 115
           R     E   V       L +   VV    ++   G +       A R+       +  +
Sbjct: 262 R---FKEGEQVMETFAKHLGV--RVVHVNATEEFMGQLKGVTDPEAKRKIIGKAFVDVFQ 316

Query: 116 TI-----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                  NA  +     + D +E+      +      +        +   LNL +  P  
Sbjct: 317 REAGMRANAKWLAQGTIYPDVIES---AGAKTGKATSIKSHHNVGGLPDTLNLKLLEPLR 373

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R   ++  +  
Sbjct: 374 DLFKDEVRKLGVELGLDP 391


>gi|308510318|ref|XP_003117342.1| hypothetical protein CRE_01794 [Caenorhabditis remanei]
 gi|308242256|gb|EFO86208.1| hypothetical protein CRE_01794 [Caenorhabditis remanei]
          Length = 707

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           ++++V    +LV VSGG DS      L      R+ G  + +AI +D+     E +    
Sbjct: 228 IKNIVGDKKVLVMVSGGVDSAVCAALLS-----RALGPNRVTAIHIDNGFMRHEESDA-- 280

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA 101
             V    + L +     ++  +   +G  A 
Sbjct: 281 --VEKSLAALNLPVHRYNYGTTFRSSGEHAQ 309


>gi|153938867|ref|YP_001390531.1| hypothetical protein CLI_1265 [Clostridium botulinum F str.
           Langeland]
 gi|152934763|gb|ABS40261.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum F
           str. Langeland]
 gi|295318612|gb|ADF98989.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum F
           str. 230613]
          Length = 266

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + VA SGG DS  LL A    L D +   I  + +                   ++ +
Sbjct: 16  GSVAVAFSGGVDSTLLLKAAKEALGDNA---ISITVV------SPYIPKWEIEEAKELAN 66

Query: 79  RLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDD 130
            + I    +     +  +          +  + S+    AK      I+     DD
Sbjct: 67  NIGIKSYFLEVPMLEEIRFNPEDRCYICKKGVFSKIKELAKENGVKYIVDGTNLDD 122


>gi|126649625|ref|ZP_01721866.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus sp. B14905]
 gi|126593950|gb|EAZ87873.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus sp. B14905]
          Length = 517

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R +V    +L A+SGG DS  + + +H  + D      + + + VDH L    K EV  
Sbjct: 216 IREIVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFVDHNL--NRKGEVEQ 267

Query: 73  V-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
           V         +    +  +          S P+        E  Y    E +K      +
Sbjct: 268 VMKTFTEDFDMNLIKIDARKRFMDKLAGVSDPEKKRKIIGNEFIYVFDEEASKLEGMDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R+  L
Sbjct: 328 AQGTLYTDIIE------SGTSTAQTIKSHHNVGGLPEDMQFKLIEPLKTLFKDEVRALGL 381

Query: 183 QRNIS 187
           +  + 
Sbjct: 382 ELGLD 386


>gi|119025704|ref|YP_909549.1| GMP synthase [Bifidobacterium adolescentis ATCC 15703]
 gi|154487478|ref|ZP_02028885.1| hypothetical protein BIFADO_01331 [Bifidobacterium adolescentis
           L2-32]
 gi|118765288|dbj|BAF39467.1| GMP synthase [Bifidobacterium adolescentis ATCC 15703]
 gi|154083996|gb|EDN83041.1| hypothetical protein BIFADO_01331 [Bifidobacterium adolescentis
           L2-32]
          Length = 520

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + +      + + + VDH  LR+   ++V+
Sbjct: 209 IREKVGDAQVICGLSGGVDSAVAAALVHKAIGE------QLTCVFVDHGLLRKGEAEQVK 262

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAK 115
           +  D      I    V     +  +          R            +A+  +I E   
Sbjct: 263 H--DFVEATGIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGA 320

Query: 116 TINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      +   T   D +E+             +        +  D+   +  P     +
Sbjct: 321 SGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDIKFQLIEPLRTLFK 375

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 376 DEVRAIGTELGLP 388


>gi|289428164|ref|ZP_06429863.1| NAD+ synthetase [Propionibacterium acnes J165]
 gi|289158644|gb|EFD06848.1| NAD+ synthetase [Propionibacterium acnes J165]
          Length = 689

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      DH  
Sbjct: 360 LRRRLESMGSP-KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTMPGFATTDH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDMCRALGIPCEVLDIRPAATQMLKGMSHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|218262620|ref|ZP_03477008.1| hypothetical protein PRABACTJOHN_02687 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223269|gb|EEC95919.1| hypothetical protein PRABACTJOHN_02687 [Parabacteroides johnsonii
           DSM 18315]
          Length = 506

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S IES    ++  +    +++A+SGG DS    + LH  +          + I VDH L
Sbjct: 197 SFIESTVAELKEQLGDDKVILALSGGVDSSVTAVLLHKAIGK------NLTCIFVDHGL 249


>gi|154493620|ref|ZP_02032940.1| hypothetical protein PARMER_02960 [Parabacteroides merdae ATCC
           43184]
 gi|154086830|gb|EDN85875.1| hypothetical protein PARMER_02960 [Parabacteroides merdae ATCC
           43184]
          Length = 506

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S IES    ++  +    +++A+SGG DS    + LH  +          + I VDH L
Sbjct: 197 SFIESTVAELKEQLGDDKVILALSGGVDSSVTAVLLHKAIGK------NLTCIFVDHGL 249


>gi|50843699|ref|YP_056926.1| NAD synthetase [Propionibacterium acnes KPA171202]
 gi|289425931|ref|ZP_06427683.1| NAD+ synthetase [Propionibacterium acnes SK187]
 gi|295131790|ref|YP_003582453.1| NAD+ synthetase [Propionibacterium acnes SK137]
 gi|50841301|gb|AAT83968.1| glutamine-dependent NAD(+) synthetase [Propionibacterium acnes
           KPA171202]
 gi|289153707|gb|EFD02416.1| NAD+ synthetase [Propionibacterium acnes SK187]
 gi|291375470|gb|ADD99324.1| NAD+ synthetase [Propionibacterium acnes SK137]
 gi|313765123|gb|EFS36487.1| NAD+ synthetase [Propionibacterium acnes HL013PA1]
 gi|313771610|gb|EFS37576.1| NAD+ synthetase [Propionibacterium acnes HL074PA1]
 gi|313812007|gb|EFS49721.1| NAD+ synthetase [Propionibacterium acnes HL083PA1]
 gi|313817151|gb|EFS54865.1| NAD+ synthetase [Propionibacterium acnes HL059PA1]
 gi|313832441|gb|EFS70155.1| NAD+ synthetase [Propionibacterium acnes HL007PA1]
 gi|313834129|gb|EFS71843.1| NAD+ synthetase [Propionibacterium acnes HL056PA1]
 gi|314916870|gb|EFS80701.1| NAD+ synthetase [Propionibacterium acnes HL005PA4]
 gi|314919048|gb|EFS82879.1| NAD+ synthetase [Propionibacterium acnes HL050PA1]
 gi|314921122|gb|EFS84953.1| NAD+ synthetase [Propionibacterium acnes HL050PA3]
 gi|314956238|gb|EFT00610.1| NAD+ synthetase [Propionibacterium acnes HL027PA1]
 gi|314958737|gb|EFT02839.1| NAD+ synthetase [Propionibacterium acnes HL002PA1]
 gi|314968763|gb|EFT12861.1| NAD+ synthetase [Propionibacterium acnes HL037PA1]
 gi|314975106|gb|EFT19201.1| NAD+ synthetase [Propionibacterium acnes HL053PA1]
 gi|314977516|gb|EFT21611.1| NAD+ synthetase [Propionibacterium acnes HL045PA1]
 gi|314985895|gb|EFT29987.1| NAD+ synthetase [Propionibacterium acnes HL005PA1]
 gi|315096853|gb|EFT68829.1| NAD+ synthetase [Propionibacterium acnes HL038PA1]
 gi|315100085|gb|EFT72061.1| NAD+ synthetase [Propionibacterium acnes HL059PA2]
 gi|315102754|gb|EFT74730.1| NAD+ synthetase [Propionibacterium acnes HL046PA1]
 gi|315107307|gb|EFT79283.1| NAD+ synthetase [Propionibacterium acnes HL030PA1]
 gi|327333034|gb|EGE74766.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL096PA2]
 gi|327448742|gb|EGE95396.1| NAD+ synthetase [Propionibacterium acnes HL043PA1]
 gi|327449063|gb|EGE95717.1| NAD+ synthetase [Propionibacterium acnes HL043PA2]
 gi|327455558|gb|EGF02213.1| NAD+ synthetase [Propionibacterium acnes HL087PA3]
 gi|327456216|gb|EGF02871.1| NAD+ synthetase [Propionibacterium acnes HL083PA2]
 gi|328756777|gb|EGF70393.1| NAD+ synthetase [Propionibacterium acnes HL087PA1]
 gi|328759059|gb|EGF72675.1| NAD+ synthetase [Propionibacterium acnes HL025PA2]
 gi|328762168|gb|EGF75664.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL099PA1]
          Length = 689

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      DH  
Sbjct: 360 LRRRLESMGSP-KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTMPGFATTDH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDMCRALGIPCEVLDIRPAATQMLKGMSHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|57241962|ref|ZP_00369902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis RM3195]
 gi|57017154|gb|EAL53935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter upsaliensis RM3195]
          Length = 338

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 27/177 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L     +     +K       H      ++ +  V  V   L
Sbjct: 2   KILVAMSGGVDSTVTAYKLKKAGHEVIGCYMKL------HGKPGYHEENIAKVEKVAKFL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
           +I + ++  +                        A   R  +   + E AK +    + T
Sbjct: 56  QIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    +LE   ++   D ++         D    +   ++  P    ++ED++ F 
Sbjct: 116 GHYA--RLENGCIKVAVDESKDQSYFLANADK---EALQYLIFPLGEMKKEDVKKFA 167


>gi|326623649|gb|EGE29994.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628111|gb|EGE34454.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 383

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 19  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 68

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 69  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 128

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 129 FAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 184

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 185 VGELEKPQVRKIAEDLGL 202


>gi|320086325|emb|CBY96098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 383

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 19  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 68

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 69  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 128

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 129 FAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 184

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 185 VGELEKPQVRKIAEDLGL 202


>gi|313674593|ref|YP_004052589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marivirga tractuosa DSM 4126]
 gi|312941291|gb|ADR20481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marivirga tractuosa DSM 4126]
          Length = 378

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 66/235 (28%), Gaps = 47/235 (20%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     +LVA+SGG DS    + LH    +     +K      D+    ++K E      
Sbjct: 1   MSKKGRVLVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTW----DYASSGSSKKETGCCSL 56

Query: 74  ------SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALIS 111
                  ++   L   H ++  +           T    A R            ++  + 
Sbjct: 57  DSINDARNLAVNLGFPHYILDIREEFGDYVIDHFTDEYLAGRTPNPCVLCNTHIKWDSLL 116

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A  +    I T H    + E       R           +       L+  I  P   
Sbjct: 117 RRADKLGCDYIATGHYAKVREENGRYIISRGKDLNKDQSYALWGVSQESLSRTIL-PLGD 175

Query: 172 CRREDIRSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
             + +IR     +             I +  D     + + R  ++R V  ++  
Sbjct: 176 LTKPEIRKMAEDKGFYELVNKSESYEICFVPD-----NDY-RGFLKRRVEGLEEE 224


>gi|296130388|ref|YP_003637638.1| GMP synthase, large subunit [Cellulomonas flavigena DSM 20109]
 gi|296022203|gb|ADG75439.1| GMP synthase, large subunit [Cellulomonas flavigena DSM 20109]
          Length = 533

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V  A ++  +SGG DS      +   + D      + + + VDH  LR    ++V 
Sbjct: 222 IRAQVGDARVICGLSGGVDSSVAAALVQRAVGD------QLTCVFVDHGLLRAGEAEQVE 275

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
              D  +   +   VV  +          + P+T      RE    +  + A+ +     
Sbjct: 276 --QDFVAATGVQLKVVDARERFLTALAGVTDPETKRKIIGREF-IRVFEDAARQVVED-- 330

Query: 123 MTAHTFDDQLE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRR 174
             AH   + +E     T+Y         +G            +  DL   +  P     +
Sbjct: 331 AGAH--GEAVEFLVQGTLYPDVVESGGGEGAANIKSHHNVGGLPDDLQFELVEPLRTLFK 388

Query: 175 EDIRSFLLQRNIS 187
           +++R+  L+  + 
Sbjct: 389 DEVRAVGLELGVP 401


>gi|260584346|ref|ZP_05852093.1| GMP synthase [Granulicatella elegans ATCC 700633]
 gi|260157864|gb|EEW92933.1| GMP synthase [Granulicatella elegans ATCC 700633]
          Length = 517

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 216 IREKVGNKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 269

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
               +  +  +    V+ +          S P+        E  Y    E AK  +   +
Sbjct: 270 --ESLSGKFGLNIIRVNAQERFLSKLKGVSDPEQKRKIIGNEFVYVFDDEAAKLTDVDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R+   
Sbjct: 328 AQGTLYTDIIE------SGTKTAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRALGT 381

Query: 183 QRN----ISWC 189
                  I W 
Sbjct: 382 ALGMPDSIVWR 392


>gi|145234420|ref|XP_001400581.1| GMP synthase [glutamine-hydrolyzing] [Aspergillus niger CBS 513.88]
 gi|134057527|emb|CAK48881.1| unnamed protein product [Aspergillus niger]
          Length = 539

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 29/196 (14%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHCLRETAKDEV 70
           +R LV    H+L AVSGG DS      +   + DR      F A+ V + C+R     E 
Sbjct: 223 IRKLVGETDHVLGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVNNGCMRLN---EC 273

Query: 71  RYVSDVCSR-LRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
             V +  ++ L I  +VV     + +           R+       +  +     +   A
Sbjct: 274 DIVEETLNKHLGINLTVVDASKRFLDGLKGVTEPEKKRKFIGNTFIDVFEEEAQKIEAEA 333

Query: 126 HTFD-------------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                            D +E++  +      +    + G+   ++    + +  P    
Sbjct: 334 EHQGAKVKWFLQGTLYPDVIESISFKGPSATIKTHHNVGGLPQRMIDGQGMRLIEPLREL 393

Query: 173 RREDIRSFLLQRNISW 188
            ++++R+   Q  I+ 
Sbjct: 394 FKDEVRALGRQLGIAH 409


>gi|16760109|ref|NP_455726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142120|ref|NP_805462.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413780|ref|YP_150855.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161614531|ref|YP_001588496.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168233116|ref|ZP_02658174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168244308|ref|ZP_02669240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168467196|ref|ZP_02701038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168822341|ref|ZP_02834341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194444280|ref|YP_002040490.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449928|ref|YP_002045236.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472097|ref|ZP_03078081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197249278|ref|YP_002146807.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362703|ref|YP_002142340.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198245672|ref|YP_002215901.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204930753|ref|ZP_03221626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205353032|ref|YP_002226833.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857259|ref|YP_002243910.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213428090|ref|ZP_03360840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213580464|ref|ZP_03362290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213612639|ref|ZP_03370465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213648222|ref|ZP_03378275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|224584258|ref|YP_002638056.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|24638320|sp|Q8Z7G9|MNMA_SALTI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71658018|sp|Q5PMJ4|MNMA_SALPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816911|sp|A9N4K8|MNMA_SALPB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|25298380|pir||AC0647 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502403|emb|CAD08358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137749|gb|AAO69311.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|56128037|gb|AAV77543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|161363895|gb|ABX67663.1| hypothetical protein SPAB_02280 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402943|gb|ACF63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194408232|gb|ACF68451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194458461|gb|EDX47300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195630429|gb|EDX49055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197094180|emb|CAR59684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|197212981|gb|ACH50378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197940188|gb|ACH77521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|204320212|gb|EDZ05416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205272813|emb|CAR37739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205332653|gb|EDZ19417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336786|gb|EDZ23550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205341217|gb|EDZ27981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|206709062|emb|CAR33395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224468785|gb|ACN46615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|322616610|gb|EFY13519.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619875|gb|EFY16749.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622443|gb|EFY19288.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629439|gb|EFY26216.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632935|gb|EFY29678.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636820|gb|EFY33523.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641380|gb|EFY38019.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322645145|gb|EFY41674.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652308|gb|EFY48664.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655660|gb|EFY51962.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660965|gb|EFY57195.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665449|gb|EFY61637.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667574|gb|EFY63735.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673632|gb|EFY69734.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677558|gb|EFY73622.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679777|gb|EFY75816.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687250|gb|EFY83222.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193058|gb|EFZ78280.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199445|gb|EFZ84538.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203633|gb|EFZ88655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208826|gb|EFZ93764.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323217800|gb|EGA02515.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218889|gb|EGA03400.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226637|gb|EGA10837.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229603|gb|EGA13726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232828|gb|EGA16924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240136|gb|EGA24180.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242877|gb|EGA26898.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246793|gb|EGA30763.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254307|gb|EGA38124.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255573|gb|EGA39332.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259407|gb|EGA43043.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267003|gb|EGA50488.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272107|gb|EGA55521.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 368

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 4   SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 54  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 113

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 114 FAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 169

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 170 VGELEKPQVRKIAEDLGL 187


>gi|39546313|ref|NP_460204.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991976|ref|ZP_02573075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168264253|ref|ZP_02686226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|197263918|ref|ZP_03163992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|200391023|ref|ZP_03217634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|24638322|sp|Q8ZPZ4|MNMA_SALTY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|197242173|gb|EDY24793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|199603468|gb|EDZ02014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205329792|gb|EDZ16556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205347303|gb|EDZ33934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|267993013|gb|ACY87898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301157775|emb|CBW17268.1| Probable tRNA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912222|dbj|BAJ36196.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223852|gb|EFX48915.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
          Length = 368

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 4   SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 54  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 113

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 114 FAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 169

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 170 VGELEKPQVRKIAEDLGL 187


>gi|329909731|ref|ZP_08275115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546403|gb|EGF31411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 369

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 55/206 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---S 74
               +++ +SGG DS      L     +     +K               D+  Y     
Sbjct: 2   SKKKVVIGLSGGVDSSVSAALLKEQGYEVIGLFMKNW----------EDDDDAEYCSTRQ 51

Query: 75  DV------CSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
           D          L I    V++             RE +                     +
Sbjct: 52  DWIDAVSVADVLGIDIEAVNFSAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
           HA  + A LI T H           R +   ++ G            D + ++ R     
Sbjct: 112 HAMHLGADLIATGHYA---------RVRESASDAGRFELLKAIDHTKDQSYFLHRLNQAQ 162

Query: 168 ------PFLRCRREDIRSFLLQRNIS 187
                 P    R+ ++R    Q  + 
Sbjct: 163 LSKTLFPLGEIRKTEVRKMAEQLGLP 188


>gi|332162627|ref|YP_004299204.1| GMP synthase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606728|emb|CBY28226.1| GMP synthase [glutamine-hydrolyzing] [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666857|gb|ADZ43501.1| GMP synthase [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330860290|emb|CBX70605.1| GMP synthase [glutamine-hydrolyzing] [Yersinia enterocolitica
           W22703]
          Length = 525

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAIVRLREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLAALAGVDEPEAKRKIIGRVFVELFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|168239141|ref|ZP_02664199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194738212|ref|YP_002114241.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713714|gb|ACF92935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288113|gb|EDY27500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 368

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 49/197 (24%), Gaps = 43/197 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
           P  ++V +SGG DS      L           +K               D   Y      
Sbjct: 5   PKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAAD 54

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISE 112
                 VC +L I    V++                +  R               A +  
Sbjct: 55  LADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEF 114

Query: 113 HAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            A+ + A  I T H     D   ++  +R      ++   L  +    +         P 
Sbjct: 115 AAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFPV 170

Query: 170 LRCRREDIRSFLLQRNI 186
               +  +R       +
Sbjct: 171 GELEKPQVRKIAEDLGL 187


>gi|123441427|ref|YP_001005414.1| GMP synthase [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|226739770|sp|A1JKT2|GUAA_YERE8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122088388|emb|CAL11179.1| putative GMP synthase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 525

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAIVRLREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLAALAGVDEPEAKRKIIGRVFVELFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|16419753|gb|AAL20163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|261246446|emb|CBG24256.1| 5-methylaminomethyl-2-thiouridylate-methyltrans ferase EC 2.1.1.61
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|323129504|gb|ADX16934.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988125|gb|AEF07108.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 383

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 19  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 68

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 69  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 128

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 129 FAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 184

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 185 VGELEKPQVRKIAEDLGL 202


>gi|162139594|ref|YP_216172.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|71658017|sp|Q57QC0|MNMA_SALCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|322714225|gb|EFZ05796.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 368

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 4   SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 54  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 113

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 114 FAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 169

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 170 VGELEKPQVRKIAEDLGL 187


>gi|330470075|ref|YP_004407818.1| GMP synthase [Verrucosispora maris AB-18-032]
 gi|328813046|gb|AEB47218.1| GMP synthase [Verrucosispora maris AB-18-032]
          Length = 521

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS      +H  + D      + + + VDH  LR    ++V 
Sbjct: 215 IRAQVGDKEVICGLSGGVDSAVAAALVHKAVGD------QLTCVFVDHGLLRAGEAEQVE 268

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARY---ALISEHAKTINA 119
              D  +   I   VV   +           P+       RE      A   E A   + 
Sbjct: 269 --KDYVAATGIKLKVVDAADRFLGALAGVTDPEQKRKIIGREFIRVFEAAAREIASHGDV 326

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 327 EFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLKFALVEPLRTLFKDEVRT 381

Query: 180 FLLQRNIS 187
             LQ  + 
Sbjct: 382 LGLQLGLP 389


>gi|163755895|ref|ZP_02163012.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Kordia algicida OT-1]
 gi|161324066|gb|EDP95398.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Kordia algicida OT-1]
          Length = 395

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 57/201 (28%), Gaps = 48/201 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS      L     +     +K           + +    +E  ++ D 
Sbjct: 2   KRVIVGLSGGVDSSVTAYLLKEQGYEVIGLFMK--------NWHDDSVTISNECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V       +                       RE ++ +  + A
Sbjct: 54  NDAMIVAEKLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFLKIA 113

Query: 115 KTINATLIMTAHTFDDQLETV---------YMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
             + A  + T H    + ET+          +  +    ++   L  +    L       
Sbjct: 114 LDLGADYVATGHYC--RKETIEKNGKQIHKLLAGKDGNKDQSYFLCQLSQEQLEKS---- 167

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P     + ++R    + ++
Sbjct: 168 LFPIGELTKPEVREIAAKADL 188


>gi|62127388|gb|AAX65091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 383

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 19  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 68

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 69  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 128

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 129 FAAEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 184

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 185 VGELEKPQVRKIAEDLGL 202


>gi|238785330|ref|ZP_04629319.1| GMP synthase [glutamine-hydrolyzing] [Yersinia bercovieri ATCC
           43970]
 gi|238713783|gb|EEQ05806.1| GMP synthase [glutamine-hydrolyzing] [Yersinia bercovieri ATCC
           43970]
          Length = 525

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAIVRLREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLSALAGVDEPEAKRKIIGRVFVELFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|328675274|gb|AEB27949.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)
           -methyltransferase [Francisella cf. novicida 3523]
          Length = 358

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 59/206 (28%), Gaps = 45/206 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
           P  ++V +SGG DS    + L     D +   +K           E        A+ ++ 
Sbjct: 2   PQKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIA 53

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAK 115
               VC  + I    +++                 A R          E ++     +  
Sbjct: 54  DAQAVCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVH 113

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD------TILYDLNLWISRPF 169
            +    I T H      +T   ++     +   GL    D      T+  +       P 
Sbjct: 114 LLGGDYIATGH----YAQTR--QAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPI 167

Query: 170 LRCRREDIRSFLLQRNISWCE--DPS 193
               +  +R    + N+   +  D +
Sbjct: 168 GNVEKSKVREIAKENNLVTFDKKDST 193


>gi|325567405|ref|ZP_08144072.1| GMP synthase [Enterococcus casseliflavus ATCC 12755]
 gi|325158838|gb|EGC70984.1| GMP synthase [Enterococcus casseliflavus ATCC 12755]
          Length = 521

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 217 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKG---EAE 267

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 268 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGDEG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 328 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|322807224|emb|CBZ04798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum H04402 065]
          Length = 353

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 35/133 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDE 69
               + +A+SGG DS      L                I +D   R+         A ++
Sbjct: 2   SKGTVALAMSGGVDSSVSAYILKE-------RGYDVIGIYMD-LWRDEREEYCNKSAAED 53

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAARE-ARYALISEH 113
            R V     +L I   V++ +                S        A  +  ++      
Sbjct: 54  ARRV---AEKLDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNA 110

Query: 114 AKTINATLIMTAH 126
           AK   A  + T H
Sbjct: 111 AKEFGADFMATGH 123


>gi|313793359|gb|EFS41417.1| GMP synthase protein [Propionibacterium acnes HL110PA1]
 gi|313800999|gb|EFS42267.1| GMP synthase protein [Propionibacterium acnes HL110PA2]
 gi|313838049|gb|EFS75763.1| GMP synthase protein [Propionibacterium acnes HL086PA1]
 gi|314963442|gb|EFT07542.1| GMP synthase protein [Propionibacterium acnes HL082PA1]
 gi|315077290|gb|EFT49352.1| GMP synthase protein [Propionibacterium acnes HL053PA2]
 gi|327451714|gb|EGE98368.1| GMP synthase protein [Propionibacterium acnes HL092PA1]
          Length = 517

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+   ++V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAEQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     +++ R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEARAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|298711646|emb|CBJ32701.1| GMP synthase (glutamine-hydrolyzing) [Ectocarpus siliculosus]
          Length = 434

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 23/184 (12%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           VR LV P   ++ AVSGG DS    + L   + DR      F A+ VD+  LR+    EV
Sbjct: 130 VRELVGPEGQVIGAVSGGVDSSVAAVLLQKAIGDR------FHAVLVDNGLLRKNEAVEV 183

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
             VS +  +L I    V  K+           P++      +   +    E  +      
Sbjct: 184 --VSRLKEKLGINLHCVDAKDRFLTLLDGCTDPESKRKIIGKTFIHVFQEEAERIGKVDF 241

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E++  +      +    + G+ DT    ++L +  P     ++++RS  
Sbjct: 242 LLQGTLYPDVIESISYKGPSATIKSHHNVGGLPDT----MHLKLIEPLRELFKDEVRSLG 297

Query: 182 LQRN 185
           +   
Sbjct: 298 MALG 301


>gi|169832363|ref|YP_001718345.1| ExsB family protein [Candidatus Desulforudis audaxviator MP104C]
 gi|169639207|gb|ACA60713.1| ExsB family protein [Candidatus Desulforudis audaxviator MP104C]
          Length = 265

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 38/195 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E VR  ++ L     ++VA+SGG DS  +L     VL +R       + I         A
Sbjct: 6   ERVRAIIKKL---GGVVVALSGGVDSATVLCLAREVLGERVAAATAVAGIH--------A 54

Query: 67  KDEVRYVSDVCSRLRIAHSVVS-WKNSKPQTGLMAAAREAR-----YALISEHAKTINAT 120
           + +++    + + L + H      + + P     +  R  R     +  + E A +    
Sbjct: 55  RADLQRARALAALLGVRHLEFPGGQLADPLFLANSRDRCYRCKSMLFRKLREIACSEGLA 114

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIR 178
            I+      D  E                       +       +  P L     + ++R
Sbjct: 115 SIIDGTNASDARE-------------------YRPGLQAAAEAGVVSPLLEAGLGKPEVR 155

Query: 179 SFLLQRNISWCEDPS 193
           S      + +   PS
Sbjct: 156 SLAFSLGLKFWNQPS 170


>gi|168179339|ref|ZP_02614003.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226950335|ref|YP_002805426.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str.
           Kyoto]
 gi|182669769|gb|EDT81745.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226844215|gb|ACO86881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 353

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 35/133 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDE 69
               + +A+SGG DS      L                I +D   R+         A ++
Sbjct: 2   SKGTVALAMSGGVDSSVSAYILKE-------RGYDVIGIYMD-LWRDEREEYCNKSAAED 53

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAARE-ARYALISEH 113
            R V     +L I   V++ +                S        A  +  ++      
Sbjct: 54  ARRV---AEKLDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNA 110

Query: 114 AKTINATLIMTAH 126
           AK   A  + T H
Sbjct: 111 AKEFGADFMATGH 123


>gi|154503546|ref|ZP_02040606.1| hypothetical protein RUMGNA_01370 [Ruminococcus gnavus ATCC 29149]
 gi|153795646|gb|EDN78066.1| hypothetical protein RUMGNA_01370 [Ruminococcus gnavus ATCC 29149]
          Length = 515

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L A+SGG DS    + L   + +      + + + VDH  LR+   DEV 
Sbjct: 210 IRAKVGDGKVLCALSGGVDSSVAAVMLSKAIGN------QLTCVFVDHGLLRKNEGDEVE 263


>gi|153939777|ref|YP_001392187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. Langeland]
 gi|205810589|sp|A7GHC7|MNMA2_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|152935673|gb|ABS41171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. Langeland]
 gi|295320186|gb|ADG00564.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. 230613]
          Length = 353

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 35/133 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDE 69
               + +A+SGG DS      L                I +D   R+         A ++
Sbjct: 2   SKGTVALAMSGGVDSSVSAYILKE-------RGYDVIGIYMD-LWRDEREEYCNKSAAED 53

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAARE-ARYALISEH 113
            R V     +L I   V++ +                S        A  +  ++      
Sbjct: 54  ARRV---AEKLDIPFHVINIEKKFKNNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNA 110

Query: 114 AKTINATLIMTAH 126
           AK   A  + T H
Sbjct: 111 AKEFGADFMATGH 123


>gi|85860898|ref|YP_463100.1| GMP synthase [Syntrophus aciditrophicus SB]
 gi|85723989|gb|ABC78932.1| GMP synthase (glutamine-hydrolyzing) [Syntrophus aciditrophicus SB]
          Length = 510

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 68/186 (36%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +RS V    +++ +SGG DS    + LH  + +      + + + VD+  LR+    E  
Sbjct: 206 IRSTVGDRKVVLGLSGGVDSSVAALLLHQAIGN------QLTCVFVDNGLLRQG---EAE 256

Query: 72  YVSDVCSRL---RIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKTI-NATL 121
            V  +  +     +  +    +      G++   R+ +        +  + A+ I +   
Sbjct: 257 KVRSLFKQHFHMNVRFARAKAQFLDALKGIVDPERKRKIIGRVFVEVFDQEARKIRDVDY 316

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+   RS        +        +   + L +  P     ++++R   
Sbjct: 317 LAQGTLYPDVIES---RSAFGGPSAVIKSHHNVGGLPRRMKLKLIEPLKHLFKDEVRLLG 373

Query: 182 LQRNIS 187
            +  +S
Sbjct: 374 RELGLS 379


>gi|299537437|ref|ZP_07050732.1| GMP synthase (glutamine-hydrolyzing) [Lysinibacillus fusiformis
           ZC1]
 gi|298727125|gb|EFI67705.1| GMP synthase (glutamine-hydrolyzing) [Lysinibacillus fusiformis
           ZC1]
          Length = 517

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R +V    +L A+SGG DS  + + +H  + D      + + + VDH L    K EV  
Sbjct: 216 IREIVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFVDHNL--NRKGEVEQ 267

Query: 73  V-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
           V         +    +  +          S P+        E  Y    E +K      +
Sbjct: 268 VMKTFTEDFDMNLIKIDARKRFMDKLAGVSDPEKKRKIIGNEFIYVFDEEASKLEGMDFL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R+  L
Sbjct: 328 AQGTLYTDIIE------SGTSTAQTIKSHHNVGGLPEDMQFQLIEPLKTLFKDEVRALGL 381

Query: 183 QRNIS 187
           +  + 
Sbjct: 382 ELGLD 386


>gi|169825804|ref|YP_001695962.1| GMP synthase [Lysinibacillus sphaericus C3-41]
 gi|168990292|gb|ACA37832.1| GMP synthase (glutamine-hydrolyzing) [Lysinibacillus sphaericus
           C3-41]
          Length = 530

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R +V    +L A+SGG DS  + + +H  + D      + + + VDH L    K EV  
Sbjct: 229 IREIVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFVDHNL--NRKGEVEQ 280

Query: 73  V-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
           V         +    +  +          S P+        E  Y    E +K      +
Sbjct: 281 VMKTFTEDFDMNLIKIDARKRFMDKLAGVSDPEKKRKIIGNEFIYVFDEEASKLEGMDFL 340

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R+  L
Sbjct: 341 AQGTLYTDIIE------SGTSTAQTIKSHHNVGGLPEDMQFQLIEPLKTLFKDEVRALGL 394

Query: 183 QRNIS 187
           +  + 
Sbjct: 395 ELGLD 399


>gi|145589603|ref|YP_001156200.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|226739657|sp|A4SYS2|GUAA_POLSQ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145048009|gb|ABP34636.1| GMP synthase (glutamine-hydrolyzing) [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 535

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 30/195 (15%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 219 EAVEH-IRKQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN 271

Query: 66  AKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH---------AK 115
             D    V +     L +    V   ++        A  EA+  +I +           K
Sbjct: 272 EGD---MVMEMFARNLGVKVIRVDAASTFMGKLTGVADPEAKRKIIGKEFVEIFQSESGK 328

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRC 172
             NA  +     + D +E+          +KG            +  D++L +  P    
Sbjct: 329 IENAKWLAQGTIYPDVIESA------GKGKKGAHTIKSHHNVGGLPEDMHLKLLEPLREL 382

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 383 FKDEVRELGVALGLP 397


>gi|332558047|ref|ZP_08412369.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides WS8N]
 gi|332275759|gb|EGJ21074.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides WS8N]
          Length = 379

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 54/237 (22%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M   P+ S+ F          ++VA+SGG DS  +   L +   D     ++      DH
Sbjct: 1   MLDHPLNSLGFA--KPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLY----DH 54

Query: 61  CLRET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--- 109
                        A  ++     V   +   H V+ ++N+  +  +   A          
Sbjct: 55  G--AALAKKGACCAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPV 112

Query: 110 -------------ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
                        + + AK ++A  + T H             QR     G  L    D 
Sbjct: 113 PCIRCNERVKFKDLLQTAKDLDADCMATGH-----------YIQRKMGPAGPELHCAADA 161

Query: 157 IL----------YDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                        +   ++  P      + + R+   +  +   + P + D  F   
Sbjct: 162 ARDQSYFLFSTTPEQLAFLRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPN 218


>gi|308161061|gb|EFO63522.1| Hypothetical protein GLP15_2785 [Giardia lamblia P15]
          Length = 258

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 4/102 (3%)

Query: 90  KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149
           +    +    +     R   ++    T     +   H   D LET+ +      +  G+ 
Sbjct: 97  RQEAKKASACSVCSRCRRRTLASFVSTGGYDALALCHHLMDDLETLAITGIHGASFFGLR 156

Query: 150 LSGMCDTILY----DLNLWISRPFLRCRREDIRSFLLQRNIS 187
               C+   +       + I RP L     +I   +    +S
Sbjct: 157 GYYHCEARDFASKVKHRVCILRPMLSVHVSEISRVVFHNGLS 198


>gi|296453920|ref|YP_003661063.1| GMP synthase large subunit [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183351|gb|ADH00233.1| GMP synthase, large subunit [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 520

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 63/194 (32%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREKVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNSKPQT--GLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +   +   G+    R              +A+  ++ E  
Sbjct: 260 QVKHDFVAATGIRLITVDAADDFLEALKGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 320 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDIKFQLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|322419745|ref|YP_004198968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
 gi|320126132|gb|ADW13692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter sp. M18]
          Length = 356

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 39/201 (19%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---------- 65
           +     I+VA+SGG DS      L     D     ++          R            
Sbjct: 1   MSEKKRIVVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYE-------RPEQTVSGGKTCC 53

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAARE----AR------YAL 109
           +  +V   + V  RL I   V+  +    +  +       AA R     AR      + L
Sbjct: 54  SLTDVMDAARVARRLGIPFQVIDLRERFRELVIDDFITEYAAGRTPNPCARCNERIKFGL 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           + E   + +A L+ T H    ++E   T   +  +    +      +       L   I 
Sbjct: 114 LLELTASFDADLLATGHYA--RIEADGTGTYQLLKGLDPRKDQTYFLFGMNQQQLARTIF 171

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P  R  + ++R    + N+ 
Sbjct: 172 -PVGRLEKHEVRELAARFNLP 191


>gi|187778511|ref|ZP_02994984.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC
           15579]
 gi|187772136|gb|EDU35938.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC
           15579]
          Length = 353

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 35/133 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDE 69
               + +A+SGG DS      L                I +D   R+         A ++
Sbjct: 2   SKGTVALAMSGGVDSSVSAYILKE-------RGYDVIGIYMD-LWRDEREEYCNKSASED 53

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAARE-ARYALISEH 113
            R V     +L I   V++ +                S        A  +  ++      
Sbjct: 54  ARRV---AEKLNIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNA 110

Query: 114 AKTINATLIMTAH 126
           AK   A  + T H
Sbjct: 111 AKEFGADFMATGH 123


>gi|172038551|ref|YP_001805052.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. ATCC 51142]
 gi|171700005|gb|ACB52986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. ATCC 51142]
          Length = 367

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 68/207 (32%), Gaps = 50/207 (24%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCL 62
           F + L     ++V +SGG DS     +LH          +   +  G+            
Sbjct: 7   FKKRLTMK-KVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLMKGKGQCC---------- 55

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK-----------NSKPQTGL----MAAA-REAR 106
                 +  +   +C +L + H +V  +            S  ++G+     +   R  +
Sbjct: 56  -SEGMVDAAF---ICEQLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVK 111

Query: 107 YA-LISEHAKTINATLIMTAHTF----DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYD 160
           +  +++   + +N   I T H      D+Q      +R+     ++   L  +   IL  
Sbjct: 112 FGPMLAYAKEELNCDRIATGHYARIRYDEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKG 171

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
                  P     +E+ R    + ++ 
Sbjct: 172 T----IFPLGEQTKEETRRIAAEFDLK 194


>gi|238788161|ref|ZP_04631956.1| GMP synthase [glutamine-hydrolyzing] [Yersinia frederiksenii ATCC
           33641]
 gi|238723748|gb|EEQ15393.1| GMP synthase [glutamine-hydrolyzing] [Yersinia frederiksenii ATCC
           33641]
          Length = 528

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 215 TIIEDAIVRLREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 268

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 269 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLAALAGVDEPEAKRKIIGRVFVELFDEE 325

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 326 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 382

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 383 FKDEVRKIGLELGLPY 398


>gi|312135230|ref|YP_004002568.1| gmp synthase, large subunit [Caldicellulosiruptor owensensis OL]
 gi|311775281|gb|ADQ04768.1| GMP synthase, large subunit [Caldicellulosiruptor owensensis OL]
          Length = 511

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 72/192 (37%), Gaps = 19/192 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++S+V    ++ A+SGG DS    + +H  +            I VDH  L
Sbjct: 200 SFIEEKVNEIKSVVGNHKVVCALSGGVDSSVAAVLVHKAIGK------NLYCIFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAK 115
           R+   +EV  V  V   + +       +        + P+       RE       E  K
Sbjct: 254 RKGEAEEVMNVFKVQFDMNVIKVDAKDRFLNALRGVTDPEEKRKIIGREFIRVFEEEAEK 313

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +   ++    + D +E+   ++    +   +G  G+ + I ++    I  P     ++
Sbjct: 314 LGDIKFLVQGTIYPDVVESGVGKAATIKSHHNVG--GLPENIKFNQ---IIEPLRELFKD 368

Query: 176 DIRSFLLQRNIS 187
           ++R   ++  I 
Sbjct: 369 EVRRVGIELGIP 380


>gi|260438131|ref|ZP_05791947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Butyrivibrio crossotus DSM 2876]
 gi|292809456|gb|EFF68661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Butyrivibrio crossotus DSM 2876]
          Length = 357

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 50/204 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------- 65
              ++V +SGG DS    + L     D     ++          ++              
Sbjct: 2   KKKVVVGMSGGVDSSVAALILKEQGYDVIGVTMQI--------WQDEDYCDMSENGGCCG 53

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARY 107
             A D+ R V++    + I + V+++K    +T                   A  R  ++
Sbjct: 54  LSAVDDARRVAET---IGIPYYVMNFKEEFKKTVIDYFVAEYLRGRTPNPCIACNRYVKW 110

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL---- 163
             +      I A  I T H  +  +E   + + R    K   L+     +LY+L      
Sbjct: 111 EALLHRCLGIGADYIATGHYGN--IEK--LPNGRFAVTKSASLNKDQSYVLYNLTQEELS 166

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
               P     ++++R    +  + 
Sbjct: 167 HTLFPISTMEKDEVRKIAERAGLP 190


>gi|313124956|ref|YP_004035220.1| argininosuccinate synthase [Halogeometricum borinquense DSM 11551]
 gi|312291321|gb|ADQ65781.1| argininosuccinate synthase [Halogeometricum borinquense DSM 11551]
          Length = 411

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 54/200 (27%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + +A SGG D+   +  L        +G  +   ++VD   +  ++ E     +      
Sbjct: 4   VALAFSGGLDTTVCVSLLQE-----EYGYDEVVGVTVDVG-QPESEFEEA--KETADAHG 55

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYA---------------LISEHAKTINATLIMTAH 126
           +   VV  K+   +    +    A Y                 I E A+         AH
Sbjct: 56  LDIHVVDAKDEFAELCFDSVRANATYQGYPLGTALARPVIAEAILEVAQEEGCD--ALAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDIRSFLLQ 183
                               G G   +  + +    +L +  P   +   RE  + +  +
Sbjct: 114 -----------------GCTGKGNDQLRFEAVWRASDLDVIAPVREMGLTREWEKQYADE 156

Query: 184 RNIS--------WCEDPSNT 195
           +N+         W  D +N 
Sbjct: 157 KNLPVQAGNDGVWSID-TNL 175


>gi|313498097|gb|ADR59463.1| MnmA [Pseudomonas putida BIRD-1]
          Length = 374

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
                ++V +SGG DS    LL+       +  F K             E        A+
Sbjct: 9   PAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMK----------NWEEDDGTEYCTAR 58

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
           +++     VC R+ I     +     W N          A           RE ++    
Sbjct: 59  EDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLDEYKAGRTPNPDILCNREIKFKAFL 118

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           ++A ++ A LI T H     D    T  ++      ++   L  +    +         P
Sbjct: 119 DYALSLGADLIATGHYVRRRDTGTLTELLKGLDPNKDQSYFLHAVGGKEIART----LFP 174

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R+   +  ++
Sbjct: 175 VGELEKPEVRAIAEKHGLA 193


>gi|294786811|ref|ZP_06752065.1| GMP synthase (Glutamine amidotransferase) [Parascardovia
           denticolens F0305]
 gi|315226441|ref|ZP_07868229.1| GMP synthase [Parascardovia denticolens DSM 10105]
 gi|294485644|gb|EFG33278.1| GMP synthase (Glutamine amidotransferase) [Parascardovia
           denticolens F0305]
 gi|315120573|gb|EFT83705.1| GMP synthase [Parascardovia denticolens DSM 10105]
          Length = 520

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 41/207 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +R  V    ++  +SGG DS      +H  + +      + + + VDH  L
Sbjct: 200 SIIEDQVARIREQVGDKQVICGLSGGVDSAVAAALVHKAIGE------QLTCVFVDHGFL 253

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVSWK---------NSKPQTG-----------LMAA 101
           R+    EV  V  D      I    V             S+P+                A
Sbjct: 254 RKG---EVEQVKHDFVKATGIKLVAVDASEDFLSALKGVSEPERKRKIIGEKFIRTFEKA 310

Query: 102 AREARYALISEHAKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           AR+    ++++          +   T   D +E+             +        +  D
Sbjct: 311 ARD----IVAQAGNEGGEVKFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPAD 361

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
           L+  +  P     ++++R+   +  + 
Sbjct: 362 LDFSLIEPLRTLFKDEVRAIGTELGLP 388


>gi|294793177|ref|ZP_06758323.1| GMP synthase [Veillonella sp. 6_1_27]
 gi|294456122|gb|EFG24486.1| GMP synthase [Veillonella sp. 6_1_27]
          Length = 511

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS      +   + D      + + I VDH L R+   DEV 
Sbjct: 210 IRKTVGDGKVLLALSGGVDSSVAAALISKAVGD------QLTCIFVDHGLMRKNEGDEVE 263

Query: 72  YV 73
             
Sbjct: 264 AA 265


>gi|294794793|ref|ZP_06759928.1| GMP synthase [Veillonella sp. 3_1_44]
 gi|294454155|gb|EFG22529.1| GMP synthase [Veillonella sp. 3_1_44]
          Length = 511

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS      +   + D      + + I VDH L R+   DEV 
Sbjct: 210 IRKTVGDGKVLLALSGGVDSSVAAALISKAVGD------QLTCIFVDHGLMRKNEGDEVE 263

Query: 72  YV 73
             
Sbjct: 264 AA 265


>gi|282849345|ref|ZP_06258730.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella parvula ATCC 17745]
 gi|282581049|gb|EFB86447.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Veillonella parvula ATCC 17745]
          Length = 511

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS      +   + D      + + I VDH L R+   DEV 
Sbjct: 210 IRKTVGDGKVLLALSGGVDSSVAAALISKAVGD------QLTCIFVDHGLMRKNEGDEVE 263

Query: 72  YV 73
             
Sbjct: 264 AA 265


>gi|261417332|ref|YP_003251015.1| exsB protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373788|gb|ACX76533.1| exsB protein [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326040|gb|ADL25241.1| protein ExsB [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 217

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 40/192 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LV +SGG DS+ LL              I   A+S D+        E+ +    C +L 
Sbjct: 5   LLV-LSGGMDSVTLLY--------DRAADIAL-AVSFDYG-SNHNDKEIPFARMHCEKLG 53

Query: 82  IAHSVVSWK-NSKPQTGLMAAAREAR----YA------------------LISEHAKTIN 118
           I H  +  K      T  + +  +A     YA                  + +  A++ +
Sbjct: 54  IPHITIPLKFMHDYFTSSLLSGADAIPEGTYADENMKSTVVPFRNGIMLSVAAGLAESRD 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +M A+ F D          R+   K M  +    T     N+ I  P+    + DI 
Sbjct: 114 LKRVMMANHFGDHA---IYPDCREEFVKNMSAAISAGTY---ANITIDAPYTNISKADIA 167

Query: 179 SFLLQRNISWCE 190
                  + + E
Sbjct: 168 RKGKALGLDYSE 179


>gi|113868007|ref|YP_726496.1| GMP synthase [Ralstonia eutropha H16]
 gi|122946825|sp|Q0KA43|GUAA_RALEH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|113526783|emb|CAJ93128.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia eutropha H16]
          Length = 539

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 68/197 (34%), Gaps = 21/197 (10%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L--RETAKDEVR-YVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALIS 111
           L  ++  K  +  +V  + ++  + H   S +        + P+       RE      +
Sbjct: 259 LLRQDEGKLVMEMFVGRLHAK--VVHIDASEQFLGHLAGVTDPEQKRKIIGREFVEVFQA 316

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  K  NA  +     + D +E+      +      +        +   L L +  P   
Sbjct: 317 EARKLSNAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEPLRD 373

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R   +   +  
Sbjct: 374 LFKDEVRELGVALGLPP 390


>gi|168186048|ref|ZP_02620683.1| GMP synthase [Clostridium botulinum C str. Eklund]
 gi|169296037|gb|EDS78170.1| GMP synthase [Clostridium botulinum C str. Eklund]
          Length = 512

 Score = 50.7 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 63/192 (32%), Gaps = 25/192 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++  ++ LV    +L A+SGG DS    + +H  +        + + + VDH  LR+ 
Sbjct: 206 EKIK-AIKELVGDKKVLCALSGGVDSSVAAVLVHKAIGK------QLTCVFVDHGLLRKD 258

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKT 116
             D+V  +     +  +    V+            S P+        E       E  K 
Sbjct: 259 EGDQVETIFK--KQFDMNLIRVNAGERFLGKLKGVSDPEKKRKIIGEEFIRVFEEEANKL 316

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E              +        +  D+   +  P     +++
Sbjct: 317 GQIDFLVQGTIYPDVVE------SGTNTSATIKSHHNVGGLPEDMQFSLIEPLRELFKDE 370

Query: 177 IRSFLLQRNISW 188
           +R+   +  I  
Sbjct: 371 VRAVGEELGIPH 382


>gi|332981931|ref|YP_004463372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mahella australiensis 50-1 BON]
 gi|332699609|gb|AEE96550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mahella australiensis 50-1 BON]
          Length = 360

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 64/227 (28%), Gaps = 65/227 (28%)

Query: 21  HILVAVSGGSDSMGLLIALHSV------------------LSDRSFGKIKFSAISVDHCL 62
            ++V +SGG DS      L                           G     A+      
Sbjct: 5   RVVVGMSGGVDSSVTAYLLKQQGYDVIGVTMQVWQDDDPERQRLEGGCCSLYAV------ 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREARY 107
                D+ R V+ +   L I + V+++K+                        A    RY
Sbjct: 59  -----DDARRVAQM---LDIPYYVMNFKDVFRRKVIDYFVDEYTKGRTPNPCLACN--RY 108

Query: 108 ALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
               E  +    I A  I T H      D+ L       +R   +K      +     Y 
Sbjct: 109 IKFEELMRRAHAIGAYYIATGHYAKIEYDEDLRRFI--LKRSIDDKKDQSYVLYTFTQYQ 166

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFER 201
           L   +  P     + ++R    +  ++  + P +       DD + R
Sbjct: 167 LEHTLM-PLGSYTKTEVREIARKIGLTVADKPDSQEICFVEDDDYGR 212


>gi|313794103|gb|EFS42123.1| NAD+ synthetase [Propionibacterium acnes HL110PA1]
 gi|313803224|gb|EFS44420.1| NAD+ synthetase [Propionibacterium acnes HL110PA2]
 gi|313839242|gb|EFS76956.1| NAD+ synthetase [Propionibacterium acnes HL086PA1]
 gi|314963998|gb|EFT08098.1| NAD+ synthetase [Propionibacterium acnes HL082PA1]
 gi|315078355|gb|EFT50392.1| NAD+ synthetase [Propionibacterium acnes HL053PA2]
 gi|315081448|gb|EFT53424.1| NAD+ synthetase [Propionibacterium acnes HL078PA1]
 gi|327334445|gb|EGE76156.1| putative NH(3)-dependent NAD(+) synthetase [Propionibacterium acnes
           HL097PA1]
 gi|327457535|gb|EGF04190.1| NAD+ synthetase [Propionibacterium acnes HL092PA1]
          Length = 689

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      DH  
Sbjct: 360 LRRRLESMGSP-KIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTMPGFATTDH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDMCRALGIPCEVLDIRPAATQMLKGMSHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|302871771|ref|YP_003840407.1| GMP synthase, large subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302574630|gb|ADL42421.1| GMP synthase, large subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 511

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 23/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++S+V    ++ A+SGG DS    + +H  +            I VDH  L
Sbjct: 200 SFIEEKVNEIKSIVGNQKVVCALSGGVDSSVAAVLVHKAIGK------NLYCIFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH 113
           R+   +EV  V     +  +    V  K+           P+       RE       E 
Sbjct: 254 RKGEAEEVMSVFR--DKFDMNVIKVDAKDRFLSALRGVIDPEEKRKIIGREFIRVFEEEA 311

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +   ++    + D +E+   ++    +   +G  G+ + I ++    I  P     
Sbjct: 312 EKLGDIKFLVQGTIYPDVVESGVGKAATIKSHHNVG--GLPEKIKFEK---IIEPLRELF 366

Query: 174 REDIRSFLLQRNIS 187
           ++++R   ++  I 
Sbjct: 367 KDEVRRVGIELGIP 380


>gi|262306005|gb|ACY45595.1| gln amidotransferase [Ammothea hilgendorfi]
          Length = 197

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 9/79 (11%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDE 69
            +++  V    +L+ VSGG DS      LH  L        +  A+ +D+   R   KDE
Sbjct: 35  RYIQETVGHNKVLMLVSGGVDSTVCAALLHKALQPN-----QVLAVHIDNGFMR---KDE 86

Query: 70  VRYVSDVCSRLRIAHSVVS 88
            ++V     +L +  SVV+
Sbjct: 87  SKHVESSLRKLNLQLSVVN 105


>gi|319399776|gb|EFV88024.1| GMP synthase [glutamine-hydrolyzing] [Staphylococcus epidermidis
           FRI909]
          Length = 513

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D   
Sbjct: 212 IRQQVGNRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCS--RLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAKTINATL 121
            V         + I       +      G+    R+ +       Y    E AK  +   
Sbjct: 263 MVMEQFGEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYVFDDEAAKLTDVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|282874643|ref|ZP_06283525.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis SK135]
 gi|281296567|gb|EFA89079.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis SK135]
          Length = 513

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D   
Sbjct: 212 IRQQVGNRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCS--RLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAKTINATL 121
            V         + I       +      G+    R+ +       Y    E AK  +   
Sbjct: 263 MVMEQFGEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYVFDDEAAKLTDVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|251811289|ref|ZP_04825762.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805156|gb|EES57813.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 515

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + +      + + I VDH L R+   D   
Sbjct: 214 IRQQVGNRKVLCAMSGGVDSSVVAVLLHKAIGE------QLTCIFVDHGLLRKGEGD--- 264

Query: 72  YV-SDVCS--RLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAKTINATL 121
            V         + I       +      G+    R+ +       Y    E AK  +   
Sbjct: 265 MVMEQFGEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYVFDDEAAKLTDVDF 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 325 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 378

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 379 IELGIP 384


>gi|242243328|ref|ZP_04797773.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis W23144]
 gi|293367654|ref|ZP_06614306.1| GMP synthase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|242233277|gb|EES35589.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis W23144]
 gi|291318224|gb|EFE58618.1| GMP synthase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 515

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D   
Sbjct: 214 IRQQVGNRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 264

Query: 72  YV-SDVCS--RLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAKTINATL 121
            V         + I       +      G+    R+ +       Y    E AK  +   
Sbjct: 265 MVMEQFGEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYVFDDEAAKLTDVDF 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 325 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 378

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 379 IELGIP 384


>gi|291087963|ref|ZP_06348006.2| GMP synthase [Clostridium sp. M62/1]
 gi|291073391|gb|EFE10755.1| GMP synthase [Clostridium sp. M62/1]
          Length = 509

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS    + +   +        + + + VDH  LR+   DEV 
Sbjct: 205 IREKVGSGRVLCALSGGVDSSVAAVMMAKAVGK------QLTCVFVDHGLLRKNEGDEVE 258

Query: 72  YV 73
            V
Sbjct: 259 AV 260


>gi|206901317|ref|YP_002250407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740420|gb|ACI19478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dictyoglomus thermophilum H-6-12]
          Length = 345

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 58/194 (29%), Gaps = 37/194 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  + V +SGG DS      L           +  +           +  +   ++    
Sbjct: 2   PIKVAVGMSGGVDSSTTAYLLKK--EGYEVIGLTMNIAY------SDSIKDAEKIAKY-- 51

Query: 79  RLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLI 122
            L I H  V  +    +                       R  ++ L+ + A+ + A  +
Sbjct: 52  -LNIPHFYVDLRKEFEEQIIKYFIDSYKSGYTPNPCTFCNRIIKFGLLLKKAQELGAEYL 110

Query: 123 MTAHTF----DDQLETVYM-RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            T H      D++ +   + R++    ++   L+ +    +         P     + ++
Sbjct: 111 ATGHYVRKVWDEEKKVFLLKRAKDLKKDQSYFLAYLTQEQIEKS----LFPLGDLTKNEV 166

Query: 178 RSFLLQRNISWCED 191
           R    +  + +  D
Sbjct: 167 RKLAEEIGL-FVSD 179


>gi|153940729|ref|YP_001389467.1| hypothetical protein CLI_0159 [Clostridium botulinum F str.
           Langeland]
 gi|152936625|gb|ABS42123.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum F
           str. Langeland]
 gi|295317569|gb|ADF97946.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum F
           str. 230613]
          Length = 268

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           + VA SGG DS  LL      L D +   I  + +               R   ++  ++
Sbjct: 20  VAVAFSGGVDSTLLLKVAKEALGDNA---ISITIV------SPYIPKWEIREARELVDKI 70

Query: 81  RIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDD 130
            I    V     +  ++         + ++ ++    A+      I+     DD
Sbjct: 71  GIKSYFVEVPMLEEIRSNPEDRCYICKKSVFNKIKDLAREKGIKYIVDGTNADD 124


>gi|57866023|ref|YP_187668.1| GMP synthase [Staphylococcus epidermidis RP62A]
 gi|71152096|sp|Q5HRX1|GUAA_STAEQ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57636681|gb|AAW53469.1| GMP synthase [Staphylococcus epidermidis RP62A]
 gi|329727970|gb|EGG64417.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis VCU144]
 gi|329734333|gb|EGG70647.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis VCU028]
 gi|329736119|gb|EGG72392.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis VCU045]
          Length = 513

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D   
Sbjct: 212 IRQQVGNRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCS--RLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAKTINATL 121
            V         + I       +      G+    R+ +       Y    E AK  +   
Sbjct: 263 MVMEQFGEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYVFDDEAAKLTDVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|27469265|ref|NP_765902.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|38372353|sp|Q8CMQ8|GUAA_STAES RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|27316815|gb|AAO05990.1|AE016752_23 GMP synthase [Staphylococcus epidermidis ATCC 12228]
          Length = 513

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + +      + + I VDH L R+   D   
Sbjct: 212 IRQQVGNRKVLCAMSGGVDSSVVAVLLHKAIGE------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCS--RLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAKTINATL 121
            V         + I       +      G+    R+ +       Y    E AK  +   
Sbjct: 263 MVMEQFGEGFDMNIIRVNAQERFMSKLKGVSDPERKRKIIGNEFVYVFDDEAAKLTDVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|117926294|ref|YP_866911.1| GMP synthase [Magnetococcus sp. MC-1]
 gi|117610050|gb|ABK45505.1| GMP synthase (glutamine-hydrolyzing) [Magnetococcus sp. MC-1]
          Length = 533

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 25/189 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+LV    +++ +SGG DS  +   LH  + +      + + + VD+  LR    D+V 
Sbjct: 229 VRALVGDDKVILGLSGGVDSSVVAALLHRAIGE------QLTCVFVDNGLLRLNEGDQVM 282

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG-------LMAAAREARYALI----SEHAKTINAT 120
                   + +   V+         G            +   +  I     E  K  NA 
Sbjct: 283 --ETFAQNMGVK--VIRVDAEARFLGKLAGVSDPEKKRKIIGHTFIEIFDEEAGKIENAK 338

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  D+ L +  P     ++++R  
Sbjct: 339 WLAQGTIYPDVVES---AGTKTGKATNIKSHHNVGGLPEDMQLKLLEPLRELFKDEVRKV 395

Query: 181 LLQRNISWC 189
            L+  +   
Sbjct: 396 GLELGLPHR 404


>gi|313829234|gb|EFS66948.1| NAD+ synthetase [Propionibacterium acnes HL063PA2]
 gi|315110544|gb|EFT82520.1| NAD+ synthetase [Propionibacterium acnes HL030PA2]
          Length = 689

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      DH  
Sbjct: 360 LRRRLESMGSP-KIVIGVSGGLDSTHALLVAAKAMDQMRRPRTDILAFTMPGFATTDH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDMCRALGIPCEVLDIRPAATQMLKGMSHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|282159938|gb|ADA79329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 378

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 23  KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 74

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLM-AAAR----------EARYALISEHAKT 116
              VC  + I    ++     W N      +   A R          E ++     +   
Sbjct: 75  AQAVCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 134

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H      +T           KG+  +      LY L     R    P    
Sbjct: 135 LGGDYIATGH----YAQTRLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 190

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 191 EKSKVREIAKENNLVTFDKKDST 213


>gi|126726861|ref|ZP_01742700.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodobacterales bacterium HTCC2150]
 gi|126703819|gb|EBA02913.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodobacterales bacterium HTCC2150]
          Length = 519

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 62/188 (32%), Gaps = 23/188 (12%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE 69
             +R+ V    ++  +SGG DS      +H  + D      + + + VDH  LR+    E
Sbjct: 213 AAIRAQVGDEKVICGLSGGVDSSVAARLIHEAIGD------QLTCVFVDHGLLRKG---E 263

Query: 70  VRYVSDVCS---RLRIAHSVVS--WKNSKPQTGLMAAAREARYALISEHAKTI-----NA 119
              V  +      +++ H+     +             R+    L  +  +        A
Sbjct: 264 AEEVVTMFRDNYNMQLIHADEQELFLGELDGQSDPETKRKIIGKLFIDVFQKHASEVGGA 323

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V   S        +        +   + L +  P     ++++R+
Sbjct: 324 KFLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRA 380

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 381 LGEELGLP 388


>gi|56708687|ref|YP_170583.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671159|ref|YP_667716.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254875562|ref|ZP_05248272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605179|emb|CAG46310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110321492|emb|CAL09693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|254841561|gb|EET19997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis MA00-2987]
          Length = 381

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 26  KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 77

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLM-AAAR----------EARYALISEHAKT 116
              VC  + I    ++     W N      +   A R          E ++     +   
Sbjct: 78  AQAVCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 137

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H      +T           KG+  +      LY L     R    P    
Sbjct: 138 LGGDYIATGH----YAQTRLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 193

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 194 EKSKVREIAKENNLVTFDKKDST 216


>gi|187930950|ref|YP_001890934.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224457896|ref|ZP_03666369.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371318|ref|ZP_04987320.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|71658014|sp|Q5NEF9|MNMA_FRATT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816649|sp|B2SEJ7|MNMA_FRATM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822328|sp|Q14FW2|MNMA_FRAT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151569558|gb|EDN35212.1| hypothetical protein FTBG_01100 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|187711859|gb|ACD30156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 359

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLM-AAAR----------EARYALISEHAKT 116
              VC  + I    ++     W N      +   A R          E ++     +   
Sbjct: 56  AQAVCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H      +T           KG+  +      LY L     R    P    
Sbjct: 116 LGGDYIATGH----YAQTRLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 171

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 172 EKSKVREIAKENNLVTFDKKDST 194


>gi|237743285|ref|ZP_04573766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
 gi|229433064|gb|EEO43276.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
          Length = 343

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 62/190 (32%), Gaps = 35/190 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +++ +SGG DS      L            +   ++++  L E +KD +     VC +
Sbjct: 2   KKVVIGMSGGVDSSVSAYLLKE-------QGYEVIGVTLNQHLEENSKD-IEDAKKVCDK 53

Query: 80  LRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKTINATLIM 123
           L + H VV+ +                S            E ++ ++ + A       + 
Sbjct: 54  LEMIHKVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKTEYVA 113

Query: 124 TAHTFDDQLE------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T +     +E         ++S     +     S M   +  D    +  P     +++I
Sbjct: 114 TGYYTS--VEYSKDFDKYLLKSVHSIIKDQ---SYMLYRLSPDKLERLIFPLKDYSKQEI 168

Query: 178 RSFLLQRNIS 187
           R   L+  + 
Sbjct: 169 REIALKIGLE 178


>gi|254526343|ref|ZP_05138395.1| conserved hypothetical protein TIGR00268 [Prochlorococcus marinus
           str. MIT 9202]
 gi|221537767|gb|EEE40220.1| conserved hypothetical protein TIGR00268 [Prochlorococcus marinus
           str. MIT 9202]
          Length = 274

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 38/191 (19%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++R ++++L     + +A SGG DS  +       L  ++      S    +  LRE AK
Sbjct: 18  TIRRYIKNL---ESVCIAYSGGVDSTLVASLAFEQLGSKAIAITGISPALAN-TLREEAK 73

Query: 68  DEVRYVSDVCSRLRIAH---SVVSWKNSKPQTGLMA---AAREARYALISEHAKTINATL 121
            + +++        + H          S           A ++  +   +  +K +N  +
Sbjct: 74  SQAKWI-------GVKHLEIKTSELDQSSYSKNPQDRCFACKKELHKHTTYFSKKLNYKI 126

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRS 179
           ++     DD                   L      I       +  P    +  ++DIR 
Sbjct: 127 VLDGVNLDD-------------------LKDYRPGIQASKQAGVISPLAKFKFSKQDIRD 167

Query: 180 FLLQRNISWCE 190
                   W +
Sbjct: 168 ISKALGFPWWD 178


>gi|326938042|gb|AEA13938.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 512

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  +            P+        E  Y    E
Sbjct: 256 RKG---EAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 367 FKDEVRVLGSELGIP 381


>gi|228906038|ref|ZP_04069929.1| GMP synthase, large subunit [Bacillus thuringiensis IBL 200]
 gi|228853608|gb|EEM98374.1| GMP synthase, large subunit [Bacillus thuringiensis IBL 200]
          Length = 515

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  +            P+        E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|228963346|ref|ZP_04124509.1| GMP synthase, large subunit [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228796333|gb|EEM43778.1| GMP synthase, large subunit [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 526

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 216 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 269

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  +            P+        E  Y    E
Sbjct: 270 RKG---EAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 326

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 327 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 380

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 381 FKDEVRVLGSELGIP 395


>gi|229094972|ref|ZP_04225971.1| GMP synthase, large subunit [Bacillus cereus Rock3-29]
 gi|229113925|ref|ZP_04243354.1| GMP synthase, large subunit [Bacillus cereus Rock1-3]
 gi|228669525|gb|EEL24938.1| GMP synthase, large subunit [Bacillus cereus Rock1-3]
 gi|228688442|gb|EEL42321.1| GMP synthase, large subunit [Bacillus cereus Rock3-29]
          Length = 515

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  +            P+        E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229028112|ref|ZP_04184258.1| GMP synthase, large subunit [Bacillus cereus AH1271]
 gi|229159423|ref|ZP_04287442.1| GMP synthase, large subunit [Bacillus cereus R309803]
 gi|228624053|gb|EEK80860.1| GMP synthase, large subunit [Bacillus cereus R309803]
 gi|228733203|gb|EEL84039.1| GMP synthase, large subunit [Bacillus cereus AH1271]
          Length = 515

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  +            P+        E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|229171103|ref|ZP_04298700.1| GMP synthase, large subunit [Bacillus cereus MM3]
 gi|228612376|gb|EEK69601.1| GMP synthase, large subunit [Bacillus cereus MM3]
          Length = 515

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  +            P+        E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|209967210|ref|YP_002300125.1| GMP synthase (glutamine-hydrolyzing) [Rhodospirillum centenum SW]
 gi|209960676|gb|ACJ01313.1| GMP synthase (glutamine-hydrolyzing) [Rhodospirillum centenum SW]
          Length = 525

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + +      + + I VD  L R     EV 
Sbjct: 221 IRAQVGTGKVICGLSGGVDSSVAAVLIHEAVGE------QLTCIFVDTGLMRAGEAQEV- 273

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V+       I    V   +         S P+       R        E AK   A  +
Sbjct: 274 -VTLFRDHYNIPLVHVDAADLFLGELEGVSDPEVKRKTIGRLFIEVFDREAAKIGGAEFL 332

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 333 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKLKLVEPLRELFKDEVRALGR 389

Query: 183 QRNISW 188
           +  +  
Sbjct: 390 ELGLPH 395


>gi|205822308|sp|A7HV69|MNMA_PARL1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 399

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET---AKDEV 70
                ++VA+SGG DS      L     D     ++      DH     R+    A  ++
Sbjct: 13  PEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLY----DHGAAVSRKGACCAGQDI 68

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
           +    V  ++ I H V+ +++   +  +   A                   ++  + + A
Sbjct: 69  QDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCNERVKFRDLLDTA 128

Query: 115 KTINATLIMTAH 126
           + + A  + T H
Sbjct: 129 RDLGAAALATGH 140


>gi|218895379|ref|YP_002443790.1| GMP synthase [Bacillus cereus G9842]
 gi|226738384|sp|B7IUT1|GUAA_BACC2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218543592|gb|ACK95986.1| GMP synthase [Bacillus cereus G9842]
          Length = 512

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 202 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  +            P+        E  Y    E
Sbjct: 256 RKG---EAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 313 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 367 FKDEVRVLGSELGIP 381


>gi|75762461|ref|ZP_00742326.1| GMP synthase (glutamine-hydrolyzing) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228898997|ref|ZP_04063272.1| GMP synthase, large subunit [Bacillus thuringiensis IBL 4222]
 gi|228937552|ref|ZP_04100193.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970439|ref|ZP_04131093.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977009|ref|ZP_04137416.1| GMP synthase, large subunit [Bacillus thuringiensis Bt407]
 gi|74490054|gb|EAO53405.1| GMP synthase (glutamine-hydrolyzing) [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228782719|gb|EEM30890.1| GMP synthase, large subunit [Bacillus thuringiensis Bt407]
 gi|228789288|gb|EEM37213.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822126|gb|EEM68113.1| GMP synthase, large subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228860640|gb|EEN05025.1| GMP synthase, large subunit [Bacillus thuringiensis IBL 4222]
          Length = 515

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 205 NFIEVELEKIRETVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 258

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V         +    V  +            P+        E  Y    E
Sbjct: 259 RKG---EAEGVMKTFSEGFHMNVIKVDAQERFMNKLKGVEDPEQKRKIIGNEFIYVFDDE 315

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E            + +        +  D+   +  P    
Sbjct: 316 ASKLQGMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 370 FKDEVRVLGSELGIP 384


>gi|328958127|ref|YP_004375513.1| GMP synthase [Carnobacterium sp. 17-4]
 gi|328674451|gb|AEB30497.1| GMP synthase [Carnobacterium sp. 17-4]
          Length = 516

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+S    +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  L
Sbjct: 206 DFIDSEIAIIRETVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLL 259

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V   +  +  +    V  K          S P+T       E  Y    E
Sbjct: 260 RKG---ESEQVMESLVGKFGLNIIRVDAKERFMAKLAGVSDPETKRKIIGNEFVYLFDDE 316

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 317 ATKLEGVDFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPDDMQFKLIEPLNTL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +Q  + 
Sbjct: 371 FKDEVRELGIQLGMP 385


>gi|170758457|ref|YP_001785433.1| hypothetical protein CLK_3279 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405446|gb|ACA53857.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A3
           str. Loch Maree]
          Length = 268

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           + VA SGG DS  LL A    L D +   I  + +               +   ++  ++
Sbjct: 20  VAVAFSGGVDSTLLLKAAKEALGDNA---ISITIV------SPYIPKWEIKEARELVDKI 70

Query: 81  RIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDD 130
            I    +     +  ++         + ++ ++    A+      I+     DD
Sbjct: 71  GIKSYFIEVPMLQEIRSNPEDRCYICKKSIFNKIKDLAREKGIKYIVDGTNADD 124


>gi|91070233|gb|ABE11153.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
           clone HF10-11H11]
          Length = 285

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 38/191 (19%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++R ++++L     + +A SGG DS  +       L  ++      S    +  LRE A+
Sbjct: 29  TIRRYIKNL---DSVCIAYSGGVDSTLIASLAFEQLGSKAIAITGISPALAN-TLREEAR 84

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAKTINATL 121
            + +++        + H  +        +          A ++  +   +  +K +N  +
Sbjct: 85  RQAKWI-------GVKHLEIKTSELDQSSYSENPKDRCFACKKELHKHTTYLSKKLNYKI 137

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRS 179
           ++     DD                   L      I       +  P    +  ++DIR 
Sbjct: 138 VLDGVNLDD-------------------LKDYRPGIQASKQAGVISPLAKFKFSKKDIRD 178

Query: 180 FLLQRNISWCE 190
                   W +
Sbjct: 179 ISRALGFPWWD 189


>gi|84500833|ref|ZP_00999068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola batsensis HTCC2597]
 gi|84390900|gb|EAQ03318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola batsensis HTCC2597]
          Length = 382

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 63/222 (28%), Gaps = 54/222 (24%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLY----DHG--AALAKKGACCAGL 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V   +   H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
            A+ ++A  + T H             QR     G  L    D    D + ++       
Sbjct: 132 TARDLDADCMATGH-----------YIQRKMGAAGAELHSAAD-AARDQSYFLFSTTPEQ 179

Query: 168 ------PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 P      + + R+   +  +   + P + D  F   
Sbjct: 180 LSFLRFPLGHLASKAETRALAAKYGLPVADKPDSQDICFVPN 221


>gi|317487335|ref|ZP_07946129.1| GMP synthase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316921434|gb|EFV42726.1| GMP synthase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 513

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 22/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E V   VR  V   H++ A+SGG DS  + + LH  +            I VD+  L
Sbjct: 201 SFVERVINEVRETVGDGHVVCALSGGVDSTVVAVLLHKAIGK------NLHCIFVDNGVL 254

Query: 63  RETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHA 114
           R    DE V Y+ +    L +       +      G+     + R         +  E A
Sbjct: 255 RSGEGDEVVTYLREH-FDLNLKLVNAQDRFLDLLAGVEDP-EKKRKIIGHTFIDVFDEEA 312

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + I     +     + D +E+V  +      +    + G+ +     +N+ +  P     
Sbjct: 313 RAIGNVEWLAQGTLYPDVIESVSHKGPSAVIKSHHNVGGLPEK----MNMKLIEPLRELF 368

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 369 KDEVRQVGAELGMP 382


>gi|238061016|ref|ZP_04605725.1| bifunctional GMP synthase/glutamine amidotransferase
           [Micromonospora sp. ATCC 39149]
 gi|237882827|gb|EEP71655.1| bifunctional GMP synthase/glutamine amidotransferase
           [Micromonospora sp. ATCC 39149]
          Length = 524

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS      +H  + D      + + + VDH  LR    ++V 
Sbjct: 218 IREQVGDKEVICGLSGGVDSAVAAALVHRAVGD------QLTCVFVDHGLLRAGEAEQVE 271

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARY---ALISEHAKTINA 119
              D  +   I   VV   +           P+       RE      A   E A   + 
Sbjct: 272 --KDYVAATGIKLKVVDAADRFLGALAGVTDPEQKRKIIGREFIRVFEAAAREVAAHGDV 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 330 EFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLKFALVEPLRTLFKDEVRT 384

Query: 180 FLLQRNIS 187
             L+  + 
Sbjct: 385 LGLELGLP 392


>gi|227891440|ref|ZP_04009245.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus salivarius ATCC 11741]
 gi|227866587|gb|EEJ74008.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus salivarius ATCC 11741]
          Length = 521

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  + +      + ++I VDH  LR+    E  
Sbjct: 220 IRETVGDKKVLLGLSGGVDSSVVGVLLHKAIGN------QLTSIFVDHGLLRKG---EAE 270

Query: 72  YVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V D +  +  +    V  K            P+        E       E AK      
Sbjct: 271 QVMDSLGGKFGLNIIKVDAKERFLNKLAGVFDPEKKRKIIGNEFIRVFDDEAAKLEGIEF 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 331 LAQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDVQFKLIEPLNTLFKDEVRELG 384

Query: 182 LQRNISW 188
            +  +  
Sbjct: 385 EKLGMPH 391


>gi|157825546|ref|YP_001493266.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia akari str. Hartford]
 gi|166235076|sp|A8GMY3|MNMA_RICAH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157799504|gb|ABV74758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia akari str. Hartford]
          Length = 365

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 68/202 (33%), Gaps = 47/202 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVR 71
             + I+VA+SGG DS  +   LH    +     ++      DH +         A  ++ 
Sbjct: 7   KHSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLY----DHGMAVGKKNACCAGQDIY 62

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHAK 115
               V ++L I H V+ +++   ++ +                       ++  + + A+
Sbjct: 63  DAKMVANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNNSVKFRDLIKTAR 122

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKG----MGLSGMCDTILY------DLNLWI 165
            + A+ + T H             ++   + G     GL    D   +      +   ++
Sbjct: 123 ELGASQLATGH-----------YVRKVSGDNGVELHTGLDPAKDQSYFLFTTTKEQLEYL 171

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
           S P     +++ R    +  + 
Sbjct: 172 SFPLGWFTKDETRKLASKFGLE 193


>gi|126736443|ref|ZP_01752184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. CCS2]
 gi|126713981|gb|EBA10851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. CCS2]
          Length = 379

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 72/234 (30%), Gaps = 54/234 (23%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP+ S+ F          ++VA+SGG DS  +   L     D     ++      DH   
Sbjct: 5   SPLNSLGFA--KSPAQTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLY----DHG-- 56

Query: 64  ET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------------- 102
                     A  ++     V   +   H V+ ++N+  +  +   A             
Sbjct: 57  AALAKKGACCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCI 116

Query: 103 ---REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT--- 156
                 ++  + E AK ++A  + T H             QR     G  L    D    
Sbjct: 117 RCNERVKFKDLLETAKDLDADCMATGH-----------YIQRMMGANGAELHSAADPTKD 165

Query: 157 -------ILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                     D   ++  P      +E+ R+   +  +S  + P + D  F   
Sbjct: 166 QSYFLFSTTQDQLDYLRFPLGHHASKEETRALAAKYGLSVADKPDSQDICFVPN 219


>gi|332993407|gb|AEF03462.1| tRNA-specific 2-thiouridylase MnmA [Alteromonas sp. SN2]
          Length = 369

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 54/196 (27%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A ++++ 
Sbjct: 10  KKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMK--------NWEEDDNDEYCLAAEDLKD 61

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              V  +L I    +++                +  R               A +   A+
Sbjct: 62  AQAVADKLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 121

Query: 116 TINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A  I T H       D   +   +R   +  ++   L  + +  +         P  
Sbjct: 122 DLGADYIATGHYVRRRHQD--GKWQLLRGLDENKDQSYFLYTLGEEHVAKT----LFPVG 175

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    ++ +
Sbjct: 176 DIEKPLVRKIAEEQGL 191


>gi|134302735|ref|YP_001122703.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166234854|sp|A4J081|MNMA_FRATW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|134050512|gb|ABO47583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 359

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKT 116
              VC  + I    +++                 A R          E ++     +   
Sbjct: 56  AQAVCDSIGIPFKKINFAAEYWDNVFEHFLIKYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H      +T           KG+  +      LY L     R    P    
Sbjct: 116 LGGDYIATGH----YAQTRLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 171

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 172 EKSKVREIAKENNLVTFDKKDST 194


>gi|82703361|ref|YP_412927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
 gi|123544047|sp|Q2Y6T6|MNMA_NITMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|82411426|gb|ABB75535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
          Length = 363

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 46/200 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
             A ++V +SGG DS    + L     +     +K               D   Y     
Sbjct: 2   SKARVVVGMSGGVDSSVAALLLKQQGYEVIGLFMKNW----------EDDDTDEYCSSRQ 51

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
                + V   + I    V++     +           A R          E ++    +
Sbjct: 52  DLIDAASVADVIGIPLEAVNFSAEYKERVFSHFLAEYKAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTFDDQLETV-----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           HA  + A  I T H    Q+         ++ +    ++   L  +    L         
Sbjct: 112 HAAGLGADYIATGHYA--QVRNTDGVFQLLKGEDGTKDQSYFLYRLNQAQLSRA----LF 165

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + D+RS      + 
Sbjct: 166 PIGHLYKRDVRSIAKDHGLP 185


>gi|121606705|ref|YP_984034.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas naphthalenivorans
           CJ2]
 gi|205816918|sp|A1VTY5|MNMA_POLNA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120595674|gb|ABM39113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaromonas naphthalenivorans CJ2]
          Length = 394

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 50/197 (25%), Gaps = 38/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               I+V +SGG DS      L     +     +K               D+  +     
Sbjct: 6   SKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNW----------EDDDDSEFCSSNI 55

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + I    V++  +          RE +                     +
Sbjct: 56  DFVDAAAVADVIGIEIEHVNFAANYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLD 115

Query: 113 HAKTINATLIMTAHTFD-DQLE-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           HA  + A  I T H     Q E T      +           +       L+  +  P  
Sbjct: 116 HAMRLGAEKIATGHYARVRQNEATGLHELLKGLDPSKDQSYFLHRLNQAQLSKTLF-PVG 174

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  + 
Sbjct: 175 ELHKTEVRRIADEIGLP 191


>gi|332716136|ref|YP_004443602.1| succinoglycan biosynthesis regulator [Agrobacterium sp. H13-3]
 gi|325062821|gb|ADY66511.1| succinoglycan biosynthesis regulator [Agrobacterium sp. H13-3]
          Length = 236

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I++  SGG DS+ L    H + ++        + +S D+  R   K E+ + +D   RL 
Sbjct: 4  IVI-CSGGLDSVSLA---HKIAAEHEL----LALVSFDYGQRH--KKELDFAADCAKRLG 53

Query: 82 IAHSVVSW 89
          + H V+  
Sbjct: 54 VPHHVIDI 61


>gi|91776467|ref|YP_546223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacillus flagellatus KT]
 gi|123254088|sp|Q1GZF5|MNMA_METFK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91710454|gb|ABE50382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylobacillus flagellatus KT]
          Length = 360

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 54/194 (27%), Gaps = 36/194 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
              ++V +SGG DS    + L     +     +K               D   Y      
Sbjct: 2   KKKVIVGMSGGVDSSVAALLLKEQGYEVVGLFMKNW----------EDDDTDEYCPAKQD 51

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
               + V  ++ I    V++     +          +A R          E ++    +H
Sbjct: 52  LIDAAAVADKIGIELEAVNFSKEYKERVFANFLEEYSAGRTPNPDILCNSEIKFKAFLDH 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  +   L+ T H    + +    +  +           +       L+  +  P     
Sbjct: 112 AMALGGDLMATGHYAQVREKNGLFQLMKADDGTKDQSYFLYRLNQAQLSKTLF-PLGHLL 170

Query: 174 REDIRSFLLQRNIS 187
           + +IR    +  + 
Sbjct: 171 KREIRDIARRAGLP 184


>gi|226310118|ref|YP_002770012.1| GMP synthase [Brevibacillus brevis NBRC 100599]
 gi|226093066|dbj|BAH41508.1| GMP synthase [Brevibacillus brevis NBRC 100599]
          Length = 513

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 63/195 (32%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS  +   +H  + D      + + + VDH  L
Sbjct: 203 TFIEDELVRIRETVGNKQVLCALSGGVDSSVVAALIHKAIGD------QLTCMFVDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V      +  +    +  +          S P+        E  Y    E
Sbjct: 257 RQG---EAEGVMETFGEKFSMKVIKIDARERFMSKLKGVSDPEQKRKIIGNEFIYVFDEE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK  +   +     + D +E            + +        +  D+   +  P    
Sbjct: 314 AAKLTDMDFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMKFTLIEPLKAL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 368 FKDEVRKLGTELGLP 382


>gi|154148437|ref|YP_001406222.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter hominis ATCC BAA-381]
 gi|226738411|sp|A7I131|GUAA_CAMHC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|153804446|gb|ABS51453.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) (gmps) [Campylobacter hominis ATCC
           BAA-381]
          Length = 511

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L AVSGG DS  +   L   + +          + VD+  LR    DE +
Sbjct: 209 IKKQVGKDRVLCAVSGGVDSSVVAALLAHCIKE------NLIVVFVDNGLLR---TDEAK 259

Query: 72  YVSDVCS-RLRIAHSVVSWKN-----SKPQTGLMAAAREARYAL---ISEHAKTI-NATL 121
            V      +L +    +          K  T      +             AK   N   
Sbjct: 260 QVEQTFKLKLGVELISIDASELFLGRLKGITDPEEKRKIIGKTFIEVFEREAKKHQNVKY 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+  +      + K +        +  D+   +  P     ++++R   
Sbjct: 320 LAQGTLYTDIIESSVV-----GSSKTIKSHHNVGGLPKDMKFKLIEPLKEIFKDEVRKLG 374

Query: 182 LQRNISW 188
            +  +S 
Sbjct: 375 TELGLSP 381


>gi|143012|gb|AAA22497.1| GMP synthetase [Bacillus subtilis]
          Length = 513

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 24/194 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L  +SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 204 NFIEIEMQKIREQVGDKQVLCGLSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLL 257

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R+  ++ V           +    V  K+         S P+        E  Y    E 
Sbjct: 258 RKGEREGVM--KTFSEGFNMNVIKVDAKDRFLNKLKGVSDPEQKRKIIGNEFIYVFDDEA 315

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K      +     + D +E            + +        +  D+   +  P     
Sbjct: 316 DKLKGIDYLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTLF 369

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  I 
Sbjct: 370 KDEVRALGTELGIP 383


>gi|253989307|ref|YP_003040663.1| GMP synthase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780757|emb|CAQ83919.1| GMP synthase [glutamine-hydrolyzing] [Photorhabdus asymbiotica]
          Length = 525

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +R  V   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 SIIEDTVVRLREQVGEDHVILGLSGGVDSSVTALLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +    +  +    V  ++         + P+       R        E
Sbjct: 266 RLN---EAEQVMEMFAGKFGLNIVHVPAEDRFLAALAGINDPEEKRKTIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ASKQTQVNWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPEEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L   + +
Sbjct: 380 FKDEVRKIGLALGLPY 395


>gi|229019618|ref|ZP_04176430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1273]
 gi|228741666|gb|EEL91854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus cereus AH1273]
          Length = 376

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 31/135 (22%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAK 67
            L +   +++ +SGG DS    + L         +         +    +        A 
Sbjct: 8   KLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------AT 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALIS 111
           ++   V +VC+++ I +  V+++     K  T  +   R  R             +    
Sbjct: 60  EDYNDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFL 119

Query: 112 EHAKTINATLIMTAH 126
           EHA  + A  + T H
Sbjct: 120 EHAIALGADYVATGH 134


>gi|254830134|ref|ZP_05234789.1| GMP synthase [Listeria monocytogenes 10403S]
          Length = 514

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 32/201 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E V+  ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  L
Sbjct: 206 SEVEIVK--IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLL 257

Query: 63  RETAKDEVRYVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISE 112
           R+    E   V +       + I       +        S P+        E  Y    E
Sbjct: 258 RKG---EADQVMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D+   +  P    
Sbjct: 315 ANKLDGVEFLAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTL 368

Query: 173 RREDIRSFLLQRN----ISWC 189
            ++++R+   +      I W 
Sbjct: 369 FKDEVRALGTELGMPDAIVWR 389


>gi|297852856|ref|XP_002894309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis lyrata subsp. lyrata]
 gi|297340151|gb|EFH70568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 68/203 (33%), Gaps = 44/203 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KD 68
            P  + V +SGG DS   L  LH+     +   +K          +E           +D
Sbjct: 83  KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIW-------FQEGFENFWNQCPWED 135

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISE 112
           +++Y   VC ++ +   VV   +    +  + ++   R  R             +    +
Sbjct: 136 DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 195

Query: 113 HAKTINATLIMTAHTFD------DQ--LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
               +    + + H         DQ    +V   SQ    ++   LS +  T L      
Sbjct: 196 AISDMEYDYVGSGHYAKVVHPPVDQNDASSVLELSQDMVKDQTYFLSHLSQTQLKR---- 251

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P    +++++R    Q ++ 
Sbjct: 252 LIFPLGCVKKDEVRKLATQFDLP 274


>gi|291533382|emb|CBL06495.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B
           subunit [Megamonas hypermegale ART12/1]
          Length = 340

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L A+SGG DS    + +H  +        + + + VDH  LR   KDE  
Sbjct: 103 IKQIVGDKKVLCALSGGVDSSVAAVLVHKAVGK------QLTCVFVDHGLLR---KDEGD 153

Query: 72  YVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAKTIN-ATL 121
            V  +  +   + +       +      G+    R+ +        +    A  +     
Sbjct: 154 QVETIFRKQFDMNLIRVDAKDRFLGKLAGVSDPERKRKIIGEEFIRVFEAEANKLGKIDF 213

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R+  
Sbjct: 214 LVQGTIYPDIVE------SGTKTSATIKSHHNVGGLPEDIQFDLIEPLRELFKDEVRAVG 267

Query: 182 LQRNISW 188
            +  I  
Sbjct: 268 EELGIPH 274


>gi|218248292|ref|YP_002373663.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8801]
 gi|226704769|sp|B7K1G5|MNMA_CYAP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218168770|gb|ACK67507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 8801]
          Length = 349

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 49/198 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
            ++V +SGG DS      LH          +   +  G+                  +  
Sbjct: 3   KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLMKGKGQCC-----------SEGMVDAA 51

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYA-LISEHA 114
           +   +C +L I H +V  ++           +G  A           R  ++  +++   
Sbjct: 52  F---ICEQLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLNYAR 108

Query: 115 KTINATLIMTAHTF----DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + +    I T H      D+  +    +R+     ++   L  +   +L         P 
Sbjct: 109 QELGCDRIATGHYARIRYDEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGT----VFPL 164

Query: 170 LRCRREDIRSFLLQRNIS 187
               +ED R    + ++ 
Sbjct: 165 GDQTKEDTRRIAAEFDLK 182


>gi|108756833|ref|YP_631693.1| tRNA-specific 2-thiouridylase MnmA [Myxococcus xanthus DK 1622]
 gi|123374481|sp|Q1D6N0|MNMA_MYXXD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|108460713|gb|ABF85898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Myxococcus xanthus DK 1622]
          Length = 348

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 31/189 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA------ISVDHCLRETAKDEVRYVS 74
            ++VA+SGG DS      L           I           +   C      D+ R V+
Sbjct: 2   RVVVAMSGGVDSSAAAALLKE--QGHEVIGITLRVWSYEGKATCGSCCSPDDIDDARAVA 59

Query: 75  DVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISEHAKTIN 118
                L I   V               V             A  R+ ++  + + A+ + 
Sbjct: 60  QT---LGIPFYVANAEEIFQDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALG 116

Query: 119 ATLIMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           A  + T H    ++E V  R   R   +     S    T+  D    I  P     + ++
Sbjct: 117 AR-LATGHYA--RVEEVDGRFVLRRAVDAAKDQSYFLFTLGQDELRDILFPVGGMTKAEV 173

Query: 178 RSFLLQRNI 186
           R+   +  +
Sbjct: 174 RAVAERHGL 182


>gi|78212421|ref|YP_381200.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9605]
 gi|123578503|sp|Q3AL87|MNMA_SYNSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78196880|gb|ABB34645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9605]
          Length = 383

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 54/205 (26%), Gaps = 37/205 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLR 63
           E+    +R       + + +SGG DS      L     +     +             L 
Sbjct: 12  EAALERLRQWPGEHRVAIGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSGKGACCAEGLV 71

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------------- 109
           + A         +C +L I H VV  + +  Q  +       R  +              
Sbjct: 72  DAAG--------ICEQLGIPHHVVDMRETFQQEIVQRLVDGYRDGITPLPCSQCNRSVKF 123

Query: 110 ---ISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
              +    +      I T H        D+     +R      ++   L  +   +L   
Sbjct: 124 GPMLDWALQERKLPRIATGHYARIRHGGDRGRHQLLRGLDTRKDQSYFLYDLPQEVL--- 180

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI 186
              I  P     + D R    +  +
Sbjct: 181 -GRIVFPLGELTKPDTRLEAARHGL 204


>gi|134300214|ref|YP_001113710.1| GMP synthase [Desulfotomaculum reducens MI-1]
 gi|134052914|gb|ABO50885.1| GMP synthase (glutamine-hydrolyzing) [Desulfotomaculum reducens
           MI-1]
          Length = 513

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V+  V+  V    +L A+SGG DS    + +H  + D        + + VDH  LR+ 
Sbjct: 207 EAVKE-VKQRVGNRQVLCALSGGVDSSVAAVLVHRAVGD------NLTCVFVDHGLLRKN 259

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
             ++V  V     +  I    V 
Sbjct: 260 EAEQV--VKTFRDQFNIKLVHVD 280


>gi|253743642|gb|EES99986.1| Hypothetical protein GL50581_2769 [Giardia intestinalis ATCC 50581]
          Length = 552

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 3/100 (3%)

Query: 91  NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY---AEKG 147
               +T   +     R   ++          +   H   D LET+ +           +G
Sbjct: 394 QETKKTSACSVCSRCRRGSLANFVSINGYDALALGHHLLDDLETMVITGVHGASFFGLRG 453

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                + DT      + I RP L     +I   +L+ ++S
Sbjct: 454 CYSGEVKDTNGAVRRVCILRPMLSVHVHEISQVVLKNDLS 493


>gi|329961014|ref|ZP_08299293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
 gi|328532300|gb|EGF59104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
          Length = 355

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 56/195 (28%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
           +I V +SGG DS  ++  L       S   I+          R+        A++++   
Sbjct: 2   NIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIRIG--------RDDTDYMDCSAEEDLEMA 53

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKTIN-- 118
           S +  R  ++  VV             A  + R  L                  + +   
Sbjct: 54  SAIARRYGLSLEVVDLHREYWDNVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFERQVGRE 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLRC 172
                T H       TV +         G  +  + D   +   +       +  P    
Sbjct: 114 FDFTATGHYAT----TVLLD---GKTWLGTAVDPIKDQTDFLAQIDYLQVSRLMFPLGGL 166

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   L+  + 
Sbjct: 167 MKQEVRDIALRAGLP 181


>gi|295093083|emb|CBK82174.1| preQ(0) biosynthesis protein QueC [Coprococcus sp. ART55/1]
          Length = 225

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   LL AL            K  A+S D+  R     E+    ++  + 
Sbjct: 11 VVV-FSGGQDSTTCLLWALKKYK--------KVYAVSFDYGQRH--ALELECAKEIADKF 59

Query: 81 RIAHSVVS 88
           + H ++ 
Sbjct: 60 GVEHHILD 67


>gi|94969297|ref|YP_591345.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Koribacter
           versatilis Ellin345]
 gi|189036216|sp|Q1IPC9|MNMA_ACIBL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94551347|gb|ABF41271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 370

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 58/197 (29%), Gaps = 30/197 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCL------RETAKDEVR 71
           I VA+SGG DS  +   L +   +     ++                    R  + D+V 
Sbjct: 7   IAVAMSGGVDSSTVAAMLRAEGYNLVGLTMQLWNQRRLAH-HEGFGEPGVGRCCSLDDVY 65

Query: 72  YVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAR----------EARYALISEHAK 115
               V   L I + VV+          KP      + R            ++  +   A+
Sbjct: 66  DARRVAETLAIPYYVVNQEDRFERDVVKPFVEDYLSGRTPIPCSLCNNHLKFDQLLRTAQ 125

Query: 116 TINATLIMTAH-TFDD-QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            I A  I T H   +D   +T     +R           +       L+  +  P     
Sbjct: 126 QIGAEKIATGHYARNDFNAQTGRWELKRPADRAKDQTYFLFGLTQEQLSRTLF-PLGHKT 184

Query: 174 REDIRSFLLQRNISWCE 190
           + ++R       +   E
Sbjct: 185 KPEVREDAKNHGLKLFE 201


>gi|319901314|ref|YP_004161042.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides helcogenes P
           36-108]
 gi|319416345|gb|ADV43456.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides helcogenes P
           36-108]
          Length = 517

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 72/193 (37%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    ++  V    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFVDTTVAELKEQVGNDRVILGLSGGVDSSVAAVLLNRAIGK------NLTCIFVDHGLL 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
           R+     V +  D  C  L +     S K        + P+       R+      +E  
Sbjct: 252 RKDEFKNVMH--DYECLGLNVIGVDASAKFFKDLEGVTDPEQKRKIIGRDFIEVFDAEAH 309

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  +A  +     + D++E+  +       +    + G+ +    ++NL +  P     +
Sbjct: 310 KITDARWLAQGTIYPDRIES--LNITGKTIKSHHNVGGLPE----EMNLKLCEPLQWLFK 363

Query: 175 EDIRSFLLQRNIS 187
           +++R    +  + 
Sbjct: 364 DEVRRVGRELGMP 376


>gi|295838491|ref|ZP_06825424.1| GMP synthase [Streptomyces sp. SPB74]
 gi|197699566|gb|EDY46499.1| GMP synthase [Streptomyces sp. SPB74]
          Length = 527

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V     +  +SGG DS     A+ + L  R+ G  + + + VDH L R+   ++V 
Sbjct: 216 IRARVGTKRAICGLSGGVDS-----AVAAALVQRAIGS-QLTCVYVDHGLMRKGETEQVE 269

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +V+    +L++  +   + ++          R+          +   A ++  A    
Sbjct: 270 KDFVAATGVQLKVVDAAERFLDALAGVSDPEQKRKIIGREFIRVFEQAQAEIV--AENAA 327

Query: 130 DQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           D  +       T+Y          G            +  DL   +  P  +  ++++R+
Sbjct: 328 DGADVAFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFELIEPLRKLFKDEVRA 387

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 388 VGQELGLP 395


>gi|281355414|ref|ZP_06241908.1| GMP synthase, large subunit [Victivallis vadensis ATCC BAA-548]
 gi|281318294|gb|EFB02314.1| GMP synthase, large subunit [Victivallis vadensis ATCC BAA-548]
          Length = 513

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 74/200 (37%), Gaps = 27/200 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +R+ V  A++++ +SGG DS      +H  +        + + I V++  L
Sbjct: 200 SFIEQQVREIRAKVGSANVILGLSGGVDSSVAAALIHKAIGK------QLNCIFVNNGLL 253

Query: 63  RETAKDEVRYVSDV---CSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISE 112
           R+    E   V ++      +++ +   + +      G+     + R         +  +
Sbjct: 254 RKN---EAERVRNLFGRAFDMKLIYVDATERFLARLAGVEEP-EKKRKIIGNEFVQVFDD 309

Query: 113 H-AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A+   A  +    T+ D +E+V +          +        +  ++   +  P  R
Sbjct: 310 ASAQIEQAEFLAQGTTYPDVIESVPID---GNPAAMIKSHHNVGGLPKEMKFQLLEPLSR 366

Query: 172 CRREDIRSFLLQRNISWCED 191
             ++++R    Q  +   ED
Sbjct: 367 LFKDEVREVGRQLGLP--ED 384


>gi|56750177|ref|YP_170878.1| hypothetical protein syc0168_c [Synechococcus elongatus PCC 6301]
 gi|81300196|ref|YP_400404.1| hypothetical protein Synpcc7942_1387 [Synechococcus elongatus PCC
           7942]
 gi|56685136|dbj|BAD78358.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169077|gb|ABB57417.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 275

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 40/199 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  + +E VR  +RS       LVA SGG DS  +       L DR+   I  +A+    
Sbjct: 1   MLQAKLEQVRSQLRSFPSA---LVAYSGGIDSSLVAYLAAQELGDRA---IAVTAV---- 50

Query: 61  CLRETAK---DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALIS 111
               +A    +++         + IAH  +          +   +      +   +  + 
Sbjct: 51  ----SASLLPEDLEAARSQAEWMGIAHEQIQTDELANPNYASNPSNRCYFCKSELHDRLQ 106

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A++    +++     DD                G    G+       +   ++     
Sbjct: 107 PLAQSRGFAVVLDGVNADDL---------------GDHRPGLQAAAERGVRSPLAE--AG 149

Query: 172 CRREDIRSFLLQRNISWCE 190
             + ++R    +  + W +
Sbjct: 150 ISKLEVRQLARELGMPWWD 168


>gi|17230338|ref|NP_486886.1| GMP synthase [Nostoc sp. PCC 7120]
 gi|44887971|sp|Q8YT80|GUAA_ANASP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|17131940|dbj|BAB74545.1| GMP synthase (glutamine-hydrolyzing) [Nostoc sp. PCC 7120]
          Length = 540

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 22/194 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++R  VR+ V    +L+A+SGG DS  L   +H  + D      + + + +D    R+ 
Sbjct: 225 EAIRE-VRAKVGDKRVLLALSGGVDSSTLAFLMHKAIGD------QLTCVFIDQGFMRKY 277

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTI 117
             +  R V     +  I    V+ ++         T      R   +       E +K +
Sbjct: 278 --EPERLVKLFQEQFHIPVEYVNARDRFLDIMSGVTDPEEKRRRIGHEFIQVFEETSKNL 335

Query: 118 N-ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFLRCR 173
                +     + D +E+          E+             +  DL   +  P  +  
Sbjct: 336 GPFDYLAQGTLYPDVIESADTNVDPQTGERVAVKIKSHHNVGGLPKDLRFKLVEPLRKLF 395

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 396 KDEVRKVGRSVGLP 409


>gi|116512291|ref|YP_809507.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactococcus lactis subsp. cremoris SK11]
 gi|123320327|sp|Q02Y87|GUAA_LACLS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116107945|gb|ABJ73085.1| GMP synthase (glutamine-hydrolyzing) [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 513

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 212 VREKVGDKKVLLGLSGGVDSSVVGVLLQRAIGD------QLTSIFVDHGFLRKG---EAD 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +  +  +    V  +          S P+T       E  Y    E  K      
Sbjct: 263 QVMETLGGKFGLNIIKVDAQKRFMDKLVGLSDPETKRKIIGNEFVYVFDDEANKLEGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRALG 376

Query: 182 LQRN----ISWC 189
            Q      I W 
Sbjct: 377 TQLGMPDEIVWR 388


>gi|254588106|ref|NP_956881.2| GMP synthase [Danio rerio]
 gi|220672808|emb|CAX14207.1| guanine monphosphate synthetase [Danio rerio]
          Length = 692

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V  + +LV +SGG DS      L+  L+       +  A+ +D+   R   K E +
Sbjct: 229 IREKVDKSKVLVLLSGGVDSTVCTALLNKALNQE-----QVIAVHIDNGFMR---KRESQ 280

Query: 72  YVSDVCSRLRIAHSVVS 88
            V +  ++L I   VV+
Sbjct: 281 SVEEALTKLGIKLKVVN 297


>gi|157803967|ref|YP_001492516.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia canadensis str.
           McKiel]
 gi|166235078|sp|A8EZE8|MNMA_RICCK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157785230|gb|ABV73731.1| hypothetical protein A1E_04020 [Rickettsia canadensis str. McKiel]
          Length = 368

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 37/205 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYVSD 75
           I+VA+SGG DS  +   LH+   +     ++      DH +         A  ++     
Sbjct: 11  IVVAMSGGVDSAAVAAMLHAQGYNVIGITLQLY----DHGMAVGKKNACCAGQDIYDAKM 66

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTINA 119
           V ++L I H V+ +++   ++ +                    +  ++  + + AK + A
Sbjct: 67  VANKLGIPHYVLDYESKFKESVIENFVDSYLQGETPLPCVQCNKSVKFKDLIKTAKELGA 126

Query: 120 TLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             + T H       D+  E           ++   L     T   +   ++S P     +
Sbjct: 127 AQLATGHYVRKINGDNGAE--LHIGIDPAKDQSYFLF----TTTKEQLDYLSFPLGWFTK 180

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRF 199
           ++ R    +  +     P + D  F
Sbjct: 181 DETRKLASKFGLEVANKPDSQDICF 205


>gi|34785183|gb|AAH56730.1| Guanine monphosphate synthetase [Danio rerio]
 gi|220672807|emb|CAX14206.1| guanine monphosphate synthetase [Danio rerio]
          Length = 359

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V  + +LV +SGG DS      L+  L+       +  A+ +D+   R   K E +
Sbjct: 229 IREKVDKSKVLVLLSGGVDSTVCTALLNKALNQE-----QVIAVHIDNGFMR---KRESQ 280

Query: 72  YVSDVCSRLRIAHSVVS 88
            V +  ++L I   VV+
Sbjct: 281 SVEEALTKLGIKLKVVN 297


>gi|71992710|ref|NP_001022256.1| hypothetical protein M106.4 [Caenorhabditis elegans]
 gi|6016175|sp|Q09580|GUAA_CAEEL RecName: Full=Probable GMP synthase [glutamine-hydrolyzing];
           AltName: Full=Glutamine amidotransferase
 gi|3878715|emb|CAA87052.1| C. elegans protein M106.4a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 792

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 57/221 (25%), Gaps = 77/221 (34%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           + S+V    +LV VSGG DS      L      R+ G  + +AI +D+     E +    
Sbjct: 313 INSIVGDKKVLVMVSGGVDSAVCAALL-----RRALGPNRVTAIHIDNGFMRHEESDA-- 365

Query: 71  RYVSDVCSRLRIAHS-----------VVSWKNSKPQTGLMAAAREAR------------- 106
             V    + L +                  K+ +            R             
Sbjct: 366 --VEKSLAALDLPIHRYNFGTTFRSSTEHCKDGEVALDECDDPEMKRKIIGNTFIRVKDV 423

Query: 107 -----------YALISEHAKT---INATLIMTAH------TFDDQLETVYMRSQRDYAEK 146
                      Y L     +     +A+ + + H        +D   T  +R  R     
Sbjct: 424 IMKDLNINHDEYFLAQGTLRPDLIESASALASGHADTIKTHHND---TFLVRELRKLG-- 478

Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                             +  P     ++++R       + 
Sbjct: 479 -----------------KVVEPLKDFHKDEVRELGKDLGLP 502


>gi|325109160|ref|YP_004270228.1| hypothetical protein Plabr_2606 [Planctomyces brasiliensis DSM
           5305]
 gi|324969428|gb|ADY60206.1| Conserved hypothetical protein CHP00268 [Planctomyces brasiliensis
           DSM 5305]
          Length = 277

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 55/199 (27%), Gaps = 37/199 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  +  +     +  L     + VA S G DS  L        + R        A+  D 
Sbjct: 1   MTENLTDKTDQLLDFLRRSGRVAVAFSAGVDSTVL------CQAARMACGDDAIAVIAD- 53

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEH 113
               + A   +    ++  ++RI   VV  +                  ++  Y  + + 
Sbjct: 54  --SPSLATGVLEEAEELAKQIRIPLHVVRTEEFARPEYQANAGNRCFYCKDTLYTAVEQL 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--R 171
              +   +I+     DD                   L      +    N  +  PF+   
Sbjct: 112 HADLKFDVIVNGANTDD-------------------LGDYRPGMQAAANHQVLSPFVECG 152

Query: 172 CRREDIRSFLLQRNISWCE 190
             + +IR      ++   +
Sbjct: 153 IGKAEIRQLAKSWDLPVWD 171


>gi|282882183|ref|ZP_06290822.1| GMP synthase (glutamine-hydrolyzing) [Peptoniphilus lacrimalis
           315-B]
 gi|281297948|gb|EFA90405.1| GMP synthase (glutamine-hydrolyzing) [Peptoniphilus lacrimalis
           315-B]
          Length = 504

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS      +   + +        + I VDH L R+   DEV 
Sbjct: 204 IRKKVGNGKVLLALSGGVDSSVTAALVSKAIGE------NLTCIFVDHGLMRKNEGDEVE 257

Query: 72  YV 73
             
Sbjct: 258 EA 259


>gi|229542770|ref|ZP_04431830.1| ExsB family protein [Bacillus coagulans 36D1]
 gi|229327190|gb|EEN92865.1| ExsB family protein [Bacillus coagulans 36D1]
          Length = 269

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 38/197 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E      + L     ++VA SGG DS  LL     VL     G  K  A++        +
Sbjct: 3   EKYDRLKQILKEMDSVVVAFSGGVDSTFLLKVAVDVL-----GADKVLAVT------ADS 51

Query: 67  K----DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKT 116
           +     E+     + + +   H V+          +K         +   +  I      
Sbjct: 52  ETYPSTELEEAKKLAALIGARHQVIKTSELSIPGYAKNDWNRCYFCKNGLFEEILPIMNQ 111

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++     DD                G    G+     + +   +        +E+
Sbjct: 112 KGFRNVVYGLIADD---------------MGEHRPGIRAAKEHGVRGPLQE--ANLYKEE 154

Query: 177 IRSFLLQRNISWCEDPS 193
           IR    +  +   E PS
Sbjct: 155 IRKLSKELGLPTWEKPS 171


>gi|71992717|ref|NP_001022257.1| hypothetical protein M106.4 [Caenorhabditis elegans]
 gi|37620046|emb|CAE48508.1| C. elegans protein M106.4b, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 794

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 57/221 (25%), Gaps = 77/221 (34%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           + S+V    +LV VSGG DS      L      R+ G  + +AI +D+     E +    
Sbjct: 315 INSIVGDKKVLVMVSGGVDSAVCAALL-----RRALGPNRVTAIHIDNGFMRHEESDA-- 367

Query: 71  RYVSDVCSRLRIAHS-----------VVSWKNSKPQTGLMAAAREAR------------- 106
             V    + L +                  K+ +            R             
Sbjct: 368 --VEKSLAALDLPIHRYNFGTTFRSSTEHCKDGEVALDECDDPEMKRKIIGNTFIRVKDV 425

Query: 107 -----------YALISEHAKT---INATLIMTAH------TFDDQLETVYMRSQRDYAEK 146
                      Y L     +     +A+ + + H        +D   T  +R  R     
Sbjct: 426 IMKDLNINHDEYFLAQGTLRPDLIESASALASGHADTIKTHHND---TFLVRELRKLG-- 480

Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                             +  P     ++++R       + 
Sbjct: 481 -----------------KVVEPLKDFHKDEVRELGKDLGLP 504


>gi|148242801|ref|YP_001227958.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. RCC307]
 gi|205828978|sp|A5GUP6|MNMA_SYNR3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147851111|emb|CAK28605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RCC307]
          Length = 383

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 57/207 (27%), Gaps = 37/207 (17%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHC 61
            + +V   +++      + V +SGG DS      L           +             
Sbjct: 11  AVNAVIERLQAWPGEHRVAVGLSGGVDSSLTAALLRDAQWQVEGLTLWLMSGKGACCAEG 70

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM-------------AAAREARYA 108
           L + A         +C  L I H VV  +++  Q  +                +R  R  
Sbjct: 71  LVDAAG--------LCEELEIPHHVVDSRDTFQQEIVQFLVQGYGDGITPLPCSRCNRAV 122

Query: 109 LISEHA----KTINATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
                     K    T + T H        D   T  +R      ++   L  +   +L 
Sbjct: 123 KFGPMLDWAEKERGITRVATGHYARLRPNADGGRTQLLRGLDARKDQSYFLYDLPQAVLQ 182

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNI 186
                +  P     + D R+   +  +
Sbjct: 183 R----LIFPLGELTKPDTRAEAARLGL 205


>gi|167040124|ref|YP_001663109.1| tRNA-specific 2-thiouridylase MnmA [Thermoanaerobacter sp. X514]
 gi|166854364|gb|ABY92773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
          Length = 387

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 41/207 (19%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH----------C 61
           F+ ++     + + +SGG DS      L     D     ++     VDH          C
Sbjct: 20  FIYNMEINNRVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVW---VDHEAKAFDSDKSC 76

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REA 105
               A  + + V+++   L I H                 V+               R+ 
Sbjct: 77  CSLKATQDAKKVAEI---LGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQI 133

Query: 106 RYALISEHAKTINATLIMTAHT-FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           ++  + E A  + A  I T H    +  E    +++R   +KG+  S     +LY L   
Sbjct: 134 KFGELLEKAFELGAYYIATGHYVRKEYDE----KTKRYLLKKGIDSSKDQSYVLYRLTQK 189

Query: 165 ISR----PFLRCRREDIRSFLLQRNIS 187
                  P    ++E+IR+   +  + 
Sbjct: 190 QLEHALFPLGNYKKEEIRALAEELKLP 216


>gi|237746906|ref|ZP_04577386.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
 gi|229378257|gb|EEO28348.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS]
          Length = 369

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 58/198 (29%), Gaps = 46/198 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD---- 75
             +++ +SGG DS      L     +     +K               D+  + S     
Sbjct: 4   KKVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNW----------EDDDDSEFCSARQDW 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHA 114
                V   + I   VV++     +           A R          E ++    +HA
Sbjct: 54  LDAVTVADVIGIDIEVVNFAAEYKERVFSEFLKEYEAGRTPNPDVLCNAEIKFKAFLDHA 113

Query: 115 KTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            ++ A  I T H       +   E   +++  D  ++   L  +    L         P 
Sbjct: 114 ISLGAERIATGHYARVRENNGFFE--LLKAVDDTKDQSYFLHRLNQQQLSKT----IFPL 167

Query: 170 LRCRREDIRSFLLQRNIS 187
              R+ ++R    +  + 
Sbjct: 168 GEIRKTEVRQIAEKIGLP 185


>gi|299822540|ref|ZP_07054426.1| GMP synthase (glutamine-hydrolyzing) [Listeria grayi DSM 20601]
 gi|299816069|gb|EFI83307.1| GMP synthase (glutamine-hydrolyzing) [Listeria grayi DSM 20601]
          Length = 514

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IREKVGDKKVLLALSGGVDSSVVGVLIHQAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS-RLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V +       +    V  K+         S P+        E  Y    E +K      
Sbjct: 264 QVMETLQGEFNMNIIKVDAKDRFLNKLAGVSDPEQKRKIIGNEFIYVFDDEASKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|281492046|ref|YP_003354026.1| GMP synthase [Lactococcus lactis subsp. lactis KF147]
 gi|161702166|gb|ABX75631.1| GMP synthase (glutamine-hydrolyzing) [Lactococcus lactis subsp.
           lactis KF147]
          Length = 513

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 212 IREKVGDKKVLLGLSGGVDSSVVGVLLQRAIGD------QLTSIFVDHGFLRKG---EAD 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +  +  +    V  +          S P+T       E  Y    E  K      
Sbjct: 263 QVMETLGGKFGLNIIKVDAQKRFMDKLVGLSDPETKRKIIGNEFVYVFDDEANKLEGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRALG 376

Query: 182 LQRN----ISWC 189
            Q      I W 
Sbjct: 377 TQLGMPDEIVWR 388


>gi|125623845|ref|YP_001032328.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|146345430|sp|Q9Z6H4|GUAA_LACLM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|124492653|emb|CAL97602.1| GMP synthase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070612|gb|ADJ60012.1| GMP synthase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 513

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 212 IREKVGDKKVLLGLSGGVDSSVVGVLLQRAIGD------QLTSIFVDHGFLRKG---EAD 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +  +  +    V  +          S P+T       E  Y    E  K      
Sbjct: 263 QVMETLGGKFGLNIIKVDAQKRFMDKLVGLSDPETKRKIIGNEFVYVFDDEANKLEGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRALG 376

Query: 182 LQRN----ISWC 189
            Q      I W 
Sbjct: 377 TQLGMPDEIVWR 388


>gi|119486285|ref|ZP_01620344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lyngbya sp. PCC 8106]
 gi|119456498|gb|EAW37628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lyngbya sp. PCC 8106]
          Length = 352

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 57/206 (27%), Gaps = 63/206 (30%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI----------SVDHCLRETAKDE 69
             ++V +SGG DS      LH    D     +    +           VD          
Sbjct: 2   KKVVVGLSGGVDSSAAAAILHH--QDYEVVGLTLWLMKGKGQCCSEGMVD---------- 49

Query: 70  VRYVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREARYAL---------------- 109
             +   +C +L + H +V     ++       +        Y+                 
Sbjct: 50  AAF---ICEQLGVPHHIVDSRELFQTHIVDYLVEG------YSAGITPLPCSQCNKTVKF 100

Query: 110 ---ISEHAKTINATLIMTAHTF----DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDL 161
              +    + +   LI T H      D+Q      +R+     ++   L  +   +L   
Sbjct: 101 GPMLRHAKEELGIDLIATGHYARIRYDEQNNRYQLLRAVDKSKDQSYFLYDLTQDLLAG- 159

Query: 162 NLWISRPFLRCRREDIRSFLLQRNIS 187
              +  P     + + R    Q N+ 
Sbjct: 160 ---VVFPLGEVLKTETRRIAAQYNLK 182


>gi|133901714|ref|NP_001076631.1| hypothetical protein M106.4 [Caenorhabditis elegans]
 gi|112982608|emb|CAL36508.1| C. elegans protein M106.4c, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 709

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 57/221 (25%), Gaps = 77/221 (34%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           + S+V    +LV VSGG DS      L      R+ G  + +AI +D+     E +    
Sbjct: 230 INSIVGDKKVLVMVSGGVDSAVCAALL-----RRALGPNRVTAIHIDNGFMRHEESDA-- 282

Query: 71  RYVSDVCSRLRIAHS-----------VVSWKNSKPQTGLMAAAREAR------------- 106
             V    + L +                  K+ +            R             
Sbjct: 283 --VEKSLAALDLPIHRYNFGTTFRSSTEHCKDGEVALDECDDPEMKRKIIGNTFIRVKDV 340

Query: 107 -----------YALISEHAKT---INATLIMTAH------TFDDQLETVYMRSQRDYAEK 146
                      Y L     +     +A+ + + H        +D   T  +R  R     
Sbjct: 341 IMKDLNINHDEYFLAQGTLRPDLIESASALASGHADTIKTHHND---TFLVRELRKLG-- 395

Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                             +  P     ++++R       + 
Sbjct: 396 -----------------KVVEPLKDFHKDEVRELGKDLGLP 419


>gi|15673468|ref|NP_267642.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactococcus lactis subsp. lactis Il1403]
 gi|13627131|sp|Q9CFJ0|GUAA_LACLA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|12724481|gb|AAK05584.1|AE006379_1 GMP synthase [Lactococcus lactis subsp. lactis Il1403]
 gi|326406956|gb|ADZ64027.1| GMP synthase [Lactococcus lactis subsp. lactis CV56]
          Length = 513

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 212 IREKVGDKKVLLGLSGGVDSSVVGVLLQRAIGD------QLTSIFVDHGFLRKG---EAD 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +  +  +    V  +          S P+T       E  Y    E  K      
Sbjct: 263 QVMETLGGKFGLNIIKVDAQKRFMDKLVGLSDPETKRKIIGNEFVYVFDDEANKLEGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRALG 376

Query: 182 LQRN----ISWC 189
            Q      I W 
Sbjct: 377 TQLGMPDEIVWR 388


>gi|329890336|ref|ZP_08268679.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brevundimonas diminuta ATCC 11568]
 gi|328845637|gb|EGF95201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Brevundimonas diminuta ATCC 11568]
          Length = 410

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 31/146 (21%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            IESVR  V  L   A ++ A+SGG DS  +   LH    D     ++      DH   E
Sbjct: 31  AIESVRQAV-GLPQGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLY----DHG--E 83

Query: 65  T--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------------- 103
                    A  ++         + I H V+ ++N      +   A              
Sbjct: 84  ALKKKGACCAGQDIHDARLAADLIGIPHYVLDYENRFKDAVIDQFADSYLKGQTPVPCIR 143

Query: 104 ---EARYALISEHAKTINATLIMTAH 126
                ++  + + A+ + A  + T H
Sbjct: 144 CNQTVKFRDLLDVARDLGAEAMATGH 169


>gi|254499186|ref|ZP_05111866.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella drancourtii LLAP12]
 gi|254351576|gb|EET10431.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase
           [Legionella drancourtii LLAP12]
          Length = 361

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 52/193 (26%), Gaps = 36/193 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
            A I+V +SGG DS      L     +     +K               D   +      
Sbjct: 2   KAKIIVGMSGGVDSSVAAWLLKEQGYEVEGLFMKNW----------EQDDTDGFCPAAQD 51

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEH 113
                 VC++L I    V++     +             R          E ++     +
Sbjct: 52  LADAQAVCNQLNIPLHSVNFSEQYWERVFMHFLSEYEKGRTPNPDVLCNKEIKFNAFLNY 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  + A  I T H   +++        +           +       L   +  P     
Sbjct: 112 ALDLGADYIATGHYAKNKISNNIGHLLKAKDRDKDQTYFLHAVDPAALAKTLF-PIGDYT 170

Query: 174 REDIRSFLLQRNI 186
           + +IR F  Q  +
Sbjct: 171 KPEIREFAKQLGL 183


>gi|162148917|ref|YP_001603378.1| GMP synthase [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787494|emb|CAP57090.1| gmp synthase [glutamine-hydrolyzing] (glutamin amidotransferase)
           (gmp synthetase) [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 562

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H++  +SGG DS    + +H  + D      + + I VD   LR    +EV 
Sbjct: 258 IREQVGSGHVICGLSGGVDSSVAAVLIHEAIGD------QLTCIFVDPGILRAGEAEEV- 310

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V     R  I        +         + P+       R        + AK   A  +
Sbjct: 311 -VKTFRGRFNIKLVHRDASDLFLSALEGVTDPEIKRKTIGRLFVEVFEEQAAKLGGADFL 369

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + + +  P     ++++R    
Sbjct: 370 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPDRMKMQLVEPLRELFKDEVRELGR 426

Query: 183 QRNIS 187
           +  I 
Sbjct: 427 ELGIP 431


>gi|149377360|ref|ZP_01895105.1| Predicted PP-loop superfamily ATPase [Marinobacter algicola
          DG893]
 gi|149358372|gb|EDM46849.1| Predicted PP-loop superfamily ATPase [Marinobacter algicola
          DG893]
          Length = 221

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS  LL               +  A+S D+  R     E+     VC  L 
Sbjct: 5  VVVIYSGGMDSFTLLHLA-------RARGYRVHALSFDYGQRHV--RELECARQVCEALS 55

Query: 82 IAHSVVSWKN 91
          + H V+  + 
Sbjct: 56 VPHKVIDIRA 65


>gi|16125150|ref|NP_419714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter crescentus CB15]
 gi|14195261|sp|P58074|MNMA_CAUCR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|13422162|gb|AAK22882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caulobacter crescentus CB15]
          Length = 383

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 26/133 (19%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET---AKDE 69
           L   A I+ A+SGG DS      L     D     ++      DH     R+    A  +
Sbjct: 7   LPEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLY----DHGAAISRKGACCAGQD 62

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEH 113
           +        R+ I H V+ +++   +  +   A                   ++  + + 
Sbjct: 63  ILDARMAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDV 122

Query: 114 AKTINATLIMTAH 126
           A+ + A  + T H
Sbjct: 123 ARDLGAEAMATGH 135


>gi|315652097|ref|ZP_07905095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saburreum DSM 3986]
 gi|315485589|gb|EFU75973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saburreum DSM 3986]
          Length = 363

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 55/199 (27%), Gaps = 42/199 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------ 72
              ++V +SGG DS      L     D +   ++             ++DE         
Sbjct: 3   KKKVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIW----------QSEDEEDMSGSGGC 52

Query: 73  --------VSDVCSRLRIAHSVVSWKNSKPQT------GLMAAARE-------ARYALIS 111
                      V   + I + V+++++                AR         RY    
Sbjct: 53  CGLSAVDDARRVARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWE 112

Query: 112 EHAKT---INATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
              +    + A  I T H    ++LE       R         +     +  D       
Sbjct: 113 SLLERSMMLGADYIATGHYARIEKLENGRYAL-RTSKTSAKDQTYALYNLTQDQLSRTLM 171

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     +++IR    + N+
Sbjct: 172 PVGDYEKDEIREIAKKFNL 190


>gi|312135463|ref|YP_004002801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor owensensis OL]
 gi|311775514|gb|ADQ05001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor owensensis OL]
          Length = 360

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 66/203 (32%), Gaps = 47/203 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETA------K 67
              +LVA+SGG DS      L         +     + +      D  +RE +       
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETE----DELIREKSCCSLTAV 57

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           D+ R V+ +   L I + V + K++  +                       R+ ++ L  
Sbjct: 58  DDARRVAHI---LDIPYYVFNMKDNFKKEVINYFVGEYIKGRTPNPCIMCNRKIKFELFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR- 167
           + A  +    I T H     +E   T      R   ++          +LY++   I   
Sbjct: 115 KKAIALGMDYIATGHYA--IIEYDNT----LCRYLLKRSKAREKDQTYVLYNMTQEILSK 168

Query: 168 ---PFLRCRREDIRSFLLQRNIS 187
              P  R  ++++R    +  + 
Sbjct: 169 TIFPLGRFSKDEVRKLAEKFKLP 191


>gi|229817822|ref|ZP_04448104.1| hypothetical protein BIFANG_03102 [Bifidobacterium angulatum DSM
           20098]
 gi|229785611|gb|EEP21725.1| hypothetical protein BIFANG_03102 [Bifidobacterium angulatum DSM
           20098]
          Length = 520

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+   ++V+
Sbjct: 209 IREQVGDAQVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKGEAEQVK 262

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAK 115
           +  D      I    V     +  +          R            +A+  +I E   
Sbjct: 263 H--DFVKATGIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGA 320

Query: 116 TINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      +   T   D +E+             +        +  D+   +  P     +
Sbjct: 321 SGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDIKFQLIEPLRTLFK 375

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 376 DEVRAIGTELGLP 388


>gi|205374227|ref|ZP_03227026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus coahuilensis m4-4]
          Length = 371

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  V +++ I +  V+++                A R          E ++    +H
Sbjct: 57  YEDVIRVANQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDH 116

Query: 114 AKTINATLIMTAHTFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           A  + A  + T H    Q+E     ++  R   E       +   +  D+   +  P   
Sbjct: 117 AMKLGADYLATGHYA--QVEERDGEIKMLRGKDENKDQTYFLNQ-LSQDVLKKVLFPIGS 173

Query: 172 CRREDIRSFLLQRNIS 187
             +  +R    +  ++
Sbjct: 174 LDKSRVREIAKEAGLA 189


>gi|171913655|ref|ZP_02929125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 365

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 58/201 (28%), Gaps = 50/201 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA---ISVDHC-LRETAKDEVRYVSDV 76
            IL A+SGG DS      L     D S   +K        + HC  +E    ++     V
Sbjct: 2   KILAALSGGVDSSVAAALLVREGHDVSGAYMKNWINEENIIGHCPWQE----DIEDARAV 57

Query: 77  CSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAKTINAT 120
             +L I   VV+      +        G              RE ++ ++ E AK     
Sbjct: 58  ADQLGIEFRVVNLMREYREKVVKYLLAGYQEGITPNPDVMCNREMKFGVLWEWAKDHGYD 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT-------------ILYDLNLWISR 167
            I T H              R       G   +                ++    + I+R
Sbjct: 118 AIATGHYA------------RWELPAEPGAHPIVRRGVDGNKDQTYFLAMMRPEQVEIAR 165

Query: 168 -PFLRCRREDIRSFLLQRNIS 187
            P     + ++R    +  + 
Sbjct: 166 FPIGHLPKAEVRVEASRLGLK 186


>gi|72162988|ref|YP_290645.1| GMP synthase [Thermobifida fusca YX]
 gi|91206835|sp|Q47LQ0|GUAA_THEFY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71916720|gb|AAZ56622.1| GMP synthase (glutamine-hydrolyzing) [Thermobifida fusca YX]
          Length = 528

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 17/197 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++ +E     +R+ +     +  +SGG DS     A+ + L  R+ G  + + + VDH 
Sbjct: 206 MVNIVEDQVARIRAQIGSKRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHG 259

Query: 62  L--RETAKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           L  +  A+  E  +V+   + L++  +   +  +          R+          +   
Sbjct: 260 LLRQGEAEQVEKDFVAATGASLKVVDAQERFLTALAGVTDPETKRKIIGREFIRVFEQAA 319

Query: 119 ATLIMTAHTFDDQLE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFL 170
             ++  A   D+ +E     T+Y          G            +  DL   +  P  
Sbjct: 320 REIVAEAGEGDEAVEFLVQGTLYPDVVESGGGNGTANIKSHHNVGGLPDDLQFTLVEPLR 379

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  + 
Sbjct: 380 ELFKDEVRRVGEELGLP 396


>gi|313886379|ref|ZP_07820102.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924155|gb|EFR34941.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 506

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 27/178 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R-ETAKDEV 70
           +++ V    +++A+SGG DS    + LH  + D      + + I VDH L R   A    
Sbjct: 206 IKAQVGDEQVIMALSGGVDSSVAAVLLHRAIGD------QLTCIFVDHGLMRLGEA---E 256

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
           + ++D    L +    V               P+       R+      +E  K   A  
Sbjct: 257 QILADY-KALGLGCIKVDASAKFLGDLAGVRDPEAKRKVIGRDFIEVFEAEAKKLPQARW 315

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +     + D +E++      +   K +        +   ++L +  P     ++++R 
Sbjct: 316 LGQGTIYPDIIESI------NITGKVIKSHHNVGGLPERMHLKLVEPLKHLFKDEVRR 367


>gi|126462045|ref|YP_001043159.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC
           17029]
 gi|205816923|sp|A3PJ71|MNMA_RHOS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126103709|gb|ABN76387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 379

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 54/237 (22%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M   P+ S+ F          ++VA+SGG DS  +   L +   D     ++      DH
Sbjct: 1   MLDHPLNSLGFA--KPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLY----DH 54

Query: 61  CLRET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--- 109
                        A  ++     V   +   H V+ ++N+  +  +   A          
Sbjct: 55  G--AALAKKGACCAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPV 112

Query: 110 -------------ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
                        + + AK ++A  + T H             QR     G  L    D 
Sbjct: 113 PCIRCNERVKFKDLLQTAKDLDADCMATGH-----------YIQRKMGPAGPELHCAADA 161

Query: 157 IL----------YDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                        +   ++  P      + + R+   +  +   + P + D  F   
Sbjct: 162 ARDQSYFLFSTTPEQLAFLRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPN 218


>gi|296102847|ref|YP_003612993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295057306|gb|ADF62044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 370

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 51/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    + ++
Sbjct: 173 ELEKPEVRKIAEELDL 188


>gi|126665592|ref|ZP_01736574.1| Predicted PP-loop superfamily ATPase [Marinobacter sp. ELB17]
 gi|126630220|gb|EBA00836.1| Predicted PP-loop superfamily ATPase [Marinobacter sp. ELB17]
          Length = 222

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS  LL              +   AIS ++  R     E+    +VC RL 
Sbjct: 5  VVVIYSGGMDSFTLLH-------KARADGLNVHAISFNYGQRHV--RELDCAQEVCQRLA 55

Query: 82 IAHSVVSWKN 91
          + H V+  + 
Sbjct: 56 VPHKVIDIRA 65


>gi|320528555|ref|ZP_08029712.1| GMP synthase protein [Solobacterium moorei F0204]
 gi|320131141|gb|EFW23714.1| GMP synthase protein [Solobacterium moorei F0204]
          Length = 513

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 29/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    +L+A+SGG DS  +   L   +            + +DH L R+    E  
Sbjct: 209 IRAQVGNDKVLLALSGGVDSSVVAALLDKAIGK------NLYCMFIDHGLLRKG---EAE 259

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINAT- 120
            V       + +    +  +          S P+        E  Y    E AK +  T 
Sbjct: 260 GVMETFTRNMSLNLIKIDARERFLNKLAGVSDPEQKRKIIGSEFIYTFRDEVAKLLQGTD 319

Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+N  +  P  +  ++++R
Sbjct: 320 IKWLAQGTLYTDIIE------SGTKTAQTIKSHHNVGGLPEDMNFKLIEPLNKLFKDEVR 373

Query: 179 SFLLQRNIS 187
           +   +  + 
Sbjct: 374 ALGTELGLP 382


>gi|255324545|ref|ZP_05365662.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
 gi|255298451|gb|EET77751.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141]
          Length = 365

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 62/189 (32%), Gaps = 33/189 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAK-----DEVRYVS 74
            +LVA+SGG DS     A  +V +      +   A+  D    RE A+     ++     
Sbjct: 6   RVLVAMSGGVDSSV--AAARAVEAGHEVIGVHL-ALHKDAQQTREKARGCCSLEDSADAR 62

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGL----MAAAR------------EARYALISEHAKTIN 118
            +C +L I   V  +     +  +     + AR            + ++  + +    + 
Sbjct: 63  RICDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALG 122

Query: 119 ATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              + T H  T D   E  YMR   D  +    + G+      +   +   P     +  
Sbjct: 123 FDAVATGHYATID---EDGYMRRSLDENKDQSYVLGVISAEELEHCFF---PIGDTPKPQ 176

Query: 177 IRSFLLQRN 185
           IR       
Sbjct: 177 IREEAAAHG 185


>gi|18978317|ref|NP_579674.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18894145|gb|AAL82069.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 204

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 48/177 (27%), Gaps = 35/177 (19%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS      L  +  +     I F  +           +  ++  +    L   H 
Sbjct: 14  FSGGKDSSLAAWILKKLGYEVKLITITFGVL----------DNW-KFARETAEILGFDHE 62

Query: 86  VVSWKNSKPQTGLMAAAREARY---------ALISEHAKTINATLIMTAHTFDDQLETVY 136
           V+       +       +E R            +   A       I      DD++   +
Sbjct: 63  VIEMPIGILEKATEMCIKEGRAGNAIQYIHERALEYIASREEVKRISDGTRRDDRV--PF 120

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPS 193
           +   +              ++    N+   RP L    + IR  + +      ED S
Sbjct: 121 LDLSK------------ARSLEDRYNVAYIRPLLGLGYKTIRELVNEI-FVVVEDES 164


>gi|311064162|ref|YP_003970887.1| GMP synthase [Bifidobacterium bifidum PRL2010]
 gi|310866481|gb|ADP35850.1| GuaA GMP synthase (glutamine-hydrolyzing) [Bifidobacterium bifidum
           PRL2010]
          Length = 520

 Score = 50.3 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 63/194 (32%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREKVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNSKPQT--GLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +   +   G+    R              +A+  ++ E  
Sbjct: 260 QVKHDFVAATGIRLITVDAADDFLEALKGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 320 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDIKFQLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|319790619|ref|YP_004152252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermovibrio ammonificans HB-1]
 gi|317115121|gb|ADU97611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermovibrio ammonificans HB-1]
          Length = 357

 Score = 50.3 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 54/192 (28%), Gaps = 28/192 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +L+  SGG DS     A H +L            +     L   A       
Sbjct: 9   KELAVMKRVLLGFSGGVDS---FYAAHLLLEQ----GFNVYPVYF--KLLPDAD--TTKP 57

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTI 117
                 L +  +VV       +                   A   RE +   + + A+ +
Sbjct: 58  RRSAELLNLKLTVVDLTEEFKKAVIDYFIAYYRKGLTPNPCAVCNREIKLKELYKLARKL 117

Query: 118 NATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               I T H    +++E+   +  +   E G   S     +   +   +  P     + +
Sbjct: 118 KIPYIATGHYARVEKVESFGRKLIKRGVEPGKEQSYFLALVEQRVFENLILPLGNLTKRE 177

Query: 177 IRSFLLQRNISW 188
           +     +    +
Sbjct: 178 VIEKAKKLGFPF 189


>gi|291167092|gb|EFE29138.1| GMP synthase [Filifactor alocis ATCC 35896]
          Length = 510

 Score = 50.3 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    +++A+SGG DS  +   +   +        + + I VDH L R+   DEV 
Sbjct: 209 IRTKVGDGKVVLALSGGVDSSVVAALISKAI------GSQLTCIFVDHGLMRKNEGDEVE 262

Query: 72  YV 73
             
Sbjct: 263 QA 264


>gi|226939706|ref|YP_002794779.1| GMP synthase [Laribacter hongkongensis HLHK9]
 gi|226714632|gb|ACO73770.1| GuaA [Laribacter hongkongensis HLHK9]
          Length = 525

 Score = 50.3 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 64/195 (32%), Gaps = 28/195 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V+  +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 209 EAVKK-IREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN 261

Query: 66  AKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEH 113
              E   V D     L +   V+    S    G +A              E       E 
Sbjct: 262 ---EGEMVMDMFARNLGVK--VIHVDASAEFMGKLAGVTDPEQKRKIIGAEFVAVFQREA 316

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K   A  +     + D +E+      +      +        +   LNL +  P     
Sbjct: 317 EKLPKAKWLAQGTIYPDVIES---AGAKTQKAHTIKSHHNVGGLPETLNLKLLEPLRELF 373

Query: 174 REDIRSFLLQRNISW 188
           ++++R   +   +  
Sbjct: 374 KDEVRQLGIALGLPH 388


>gi|224476719|ref|YP_002634325.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254811461|sp|B9DNH6|MNMA_STACT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|222421326|emb|CAL28140.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 370

 Score = 50.3 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 67/196 (34%), Gaps = 43/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 7   RVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDV 58

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC+++ I +  V+++     K  T  +   ++ R             +    +HA  +
Sbjct: 59  IAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMKL 118

Query: 118 NATLIMTAHT------FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            A  + T H        D  +E   +R   +  ++   L+ +     ++    +  P   
Sbjct: 119 GADYVATGHYAQVRRDADGNVE--MLRGVDNNKDQTYFLNQLT----HEQLSKVMFPLGG 172

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +++++
Sbjct: 173 MEKSEVRRIAAEQDLA 188


>gi|206896027|ref|YP_002246488.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738644|gb|ACI17722.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Coprothermobacter proteolyticus DSM
           5265]
          Length = 511

 Score = 50.3 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++R    ++     +L A+SGG DS     A+ +VL+ R+ G  +   + +D  L+   
Sbjct: 204 EAIREIRETVGENGMVLGALSGGVDS-----AVAAVLTHRALGCGRLQCLYIDTGLQ--R 256

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN 91
            ++  +V ++   L +   VV  K 
Sbjct: 257 AEDEAHVRNLSKHLGLKIKVVDAKE 281


>gi|148379168|ref|YP_001253709.1| hypothetical protein CBO1183 [Clostridium botulinum A str. ATCC
           3502]
 gi|153933287|ref|YP_001383544.1| hypothetical protein CLB_1214 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935920|ref|YP_001387093.1| hypothetical protein CLC_1226 [Clostridium botulinum A str. Hall]
 gi|168178602|ref|ZP_02613266.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum
           NCTC 2916]
 gi|226948450|ref|YP_002803541.1| hypothetical protein TIGR00268 [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288652|emb|CAL82733.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152929331|gb|ABS34831.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931834|gb|ABS37333.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A
           str. Hall]
 gi|182671522|gb|EDT83496.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum
           NCTC 2916]
 gi|226843653|gb|ACO86319.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A2
           str. Kyoto]
          Length = 266

 Score = 50.3 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 35/175 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + VA SGG DS  LL A    L D +   I  + +                   ++ +
Sbjct: 16  GSVAVAFSGGVDSTLLLKAAKEALGDNA---ISITVV------SPYIPKWEIEEAKELAN 66

Query: 79  RLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDDQLET 134
            + I    +     +  +          +  + S+    AK      I+     DD    
Sbjct: 67  NIGIKSYFLEVPMLEEIRFNPEDRCYICKKGVFSKIKELAKEKGVKYIVDGTNLDD---- 122

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNIS 187
                     +   G+  + +       L +  P L     +E+IR+   +  + 
Sbjct: 123 --------TKDYRPGMRALKE-------LDVKSPLLENSINKEEIRTLSKELGLE 162


>gi|262376896|ref|ZP_06070123.1| GMP synthase domain-containing protein [Acinetobacter lwoffii
           SH145]
 gi|262308241|gb|EEY89377.1| GMP synthase domain-containing protein [Acinetobacter lwoffii
           SH145]
          Length = 522

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LRQQIGDEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSKP-------QTGLMAAA----REARYALISEHAKTINAT 120
                   + I   V+     +        +    A      RE       E  K     
Sbjct: 272 --QMFADNMGI--RVIRADAEERFLTALAGEVDPEAKRKIIGREFIAVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPADLAFELVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|226312727|ref|YP_002772621.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599]
 gi|226095675|dbj|BAH44117.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599]
          Length = 370

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 42/198 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS      L         +         +F      HC   TA+++
Sbjct: 4   PEDTRVVVGMSGGVDSSVTAYLLKQQGYDVIGIFMKNWDDTDEFG-----HC---TAEED 55

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEH 113
            + V  VC ++ I +  V+++                            RE ++  +   
Sbjct: 56  FQDVRRVCEQIGIPYYTVNFEKEYMDKVFQYFLDEYKRGRTPNPDVMCNREIKFGELLAK 115

Query: 114 AKTINATLIMTAHTFDDQL-----ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
              + A  I T H    Q+     E   +R   +  ++   L+ +    L         P
Sbjct: 116 VMDLGADYIATGHYA--QVKYIDGEYKLIRGADNNKDQTYFLNVLGQEQLSKTMF----P 169

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R    +  +
Sbjct: 170 IGHLPKPQVREIAEKAGL 187


>gi|110679829|ref|YP_682836.1| tRNA-specific 2-thiouridylase MnmA [Roseobacter denitrificans OCh
           114]
 gi|123065538|sp|Q166E3|MNMA_ROSDO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|109455945|gb|ABG32150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter denitrificans OCh 114]
          Length = 380

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 52/206 (25%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLY----DHG--AALAKKGACCAGL 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V  ++   H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            AK ++A  + T H             QR     G  L    D          +   +  
Sbjct: 132 TAKDLDADCMATGH-----------YIQRKSGPYGAELHSAADANRDQSYFLFSTTPEQL 180

Query: 163 LWISRPFLRC-RREDIRSFLLQRNIS 187
            ++  P      +ED R+   +  +S
Sbjct: 181 AFLRFPLGHLPSKEDTRALAEKYGLS 206


>gi|4321715|gb|AAD15805.1| GMP synthase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 513

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 212 IREKVGDKKVLLGLSGGVDSSVVGVLLQRAIGD------QLTSIFVDHGFLRKG---EAD 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V   +  +  +    V  +          S P+T       E  Y    E  K      
Sbjct: 263 QVMETLGGKFGLNIIKVDAQKRFMDKLVGLSDPETQRKIIGNEFVYVFDDEANKLEGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRALG 376

Query: 182 LQRN----ISWC 189
            Q      I W 
Sbjct: 377 TQLGMPDEIVWR 388


>gi|205829088|sp|A7ICB9|MNMA_XANP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 389

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 64/213 (30%), Gaps = 50/213 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS------ 74
            ++VA+SGG DS  +         D     ++      DH   E A       +      
Sbjct: 17  RVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLY----DHG--EAAHRRGACCAGQDIYD 70

Query: 75  --DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKT 116
             +V   L I H V+ +++   +  +   A                R  ++  +   A+ 
Sbjct: 71  ASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRTVKFRDLLATAEE 130

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLWIS 166
           + A  + T H            + R   +   GL    +                   + 
Sbjct: 131 LGARYLATGHYV----------ASRALPDGRRGLYRAAEEARDQSYFLYATTAAQLERLR 180

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            P    R+ D+R+   +  +   + P + D  F
Sbjct: 181 FPLGEMRKADVRALAAEFGLPVADKPDSQDICF 213


>gi|205822510|sp|Q5FR73|MNMA_GLUOX RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 361

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 27/128 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYVS 74
            ILVA+SGG DS  +   L     +     ++      DH  +        A  ++    
Sbjct: 2   RILVAMSGGVDSSVVAALLKRQGHEVIGATLQLY----DHG-QAAKPGACCAGRDIMDAR 56

Query: 75  DVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAKTIN 118
            V  RL   H V+     +++S  ++   A AR              ++  +   A+ + 
Sbjct: 57  AVADRLGFPHYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLG 116

Query: 119 ATLIMTAH 126
              + T H
Sbjct: 117 CEAMATGH 124


>gi|19115224|ref|NP_594312.1| GMP synthase [glutamine-hydrolyzing] (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|74625347|sp|Q9P772|GUAA_SCHPO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|7630124|emb|CAB88269.1| GMP synthase [glutamine-hydrolyzing] (predicted)
           [Schizosaccharomyces pombe]
          Length = 539

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 40/207 (19%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + ++     +R ++ P+ H++ AVSGG DS      L   + DR      F AI VD+  
Sbjct: 220 NFVDKEILRIRKMIGPSDHVIGAVSGGVDSTVASKVLKEAIGDR------FHAIMVDNGL 273

Query: 62  LRETAKDEVRYVSDVCSR-LRIAHSVVSWKNS-----KPQTGLMAAA------------R 103
           LR     E   V +  ++ L I  +VV          K  T                  R
Sbjct: 274 LRLN---EAEIVRETLNKHLGIQLTVVDASEEFIGKLKGVTDPEKKRKIIGNTFIHVFER 330

Query: 104 EARYALISEHAKTINA--TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
           EA         K  N     ++    + D +E++  +      +    + G+    L D+
Sbjct: 331 EA-----ERIVKETNGKVEYLLQGTLYPDVIESISFKGPSQTIKTHHNVGGL----LKDM 381

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISW 188
            L +  P     ++++R+      I  
Sbjct: 382 KLKLIEPLRELFKDEVRALGELLGIEH 408


>gi|154244361|ref|YP_001415319.1| tRNA-specific 2-thiouridylase MnmA [Xanthobacter autotrophicus Py2]
 gi|154158446|gb|ABS65662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthobacter autotrophicus Py2]
          Length = 436

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 64/213 (30%), Gaps = 50/213 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS------ 74
            ++VA+SGG DS  +         D     ++      DH   E A       +      
Sbjct: 64  RVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLY----DHG--EAAHRRGACCAGQDIYD 117

Query: 75  --DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKT 116
             +V   L I H V+ +++   +  +   A                R  ++  +   A+ 
Sbjct: 118 ASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRTVKFRDLLATAEE 177

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLWIS 166
           + A  + T H            + R   +   GL    +                   + 
Sbjct: 178 LGARYLATGHYV----------ASRALPDGRRGLYRAAEEARDQSYFLYATTAAQLERLR 227

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            P    R+ D+R+   +  +   + P + D  F
Sbjct: 228 FPLGEMRKADVRALAAEFGLPVADKPDSQDICF 260


>gi|89069527|ref|ZP_01156871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola granulosus HTCC2516]
 gi|89044862|gb|EAR50952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicola granulosus HTCC2516]
          Length = 379

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 65/215 (30%), Gaps = 48/215 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--L-RET---AKDEVRYVS 74
            ++VA+SGG DS  +   L     D     ++      DH   L R+    A  ++    
Sbjct: 20  RVVVAMSGGVDSSVVAAELAREGYDVVGVTLQLY----DHGAALARKGACCAGRDIHDAR 75

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
            V   +   H V+ ++N      +   A                   ++  + E A+ ++
Sbjct: 76  RVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLETARDLD 135

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLWISRP 168
           A  + T H             QR     G  L    D              +   ++  P
Sbjct: 136 ADCMATGH-----------YIQRKMGAHGPELHSAADAARDQSYFLFSTTPEQLAYLRFP 184

Query: 169 FLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 + + R+   +  +   + P + D  F   
Sbjct: 185 LGHLASKAETRALAGRHGLPVADKPDSQDICFVPN 219


>gi|295399328|ref|ZP_06809310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978794|gb|EFG54390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 371

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 40/198 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YEDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A +I A  + T H       D  E   +R      ++   L+ +    L      +  P 
Sbjct: 117 ALSIGADYVATGHYARIEYRD-GEYKLLRGVDQKKDQTYFLNQLGQEQLSK----VMFPL 171

Query: 170 LRCRREDIRSFLLQRNIS 187
               +  +R       ++
Sbjct: 172 GHLEKAQVRQIAKDAGLA 189


>gi|260102614|ref|ZP_05752851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus helveticus DSM 20075]
 gi|260083568|gb|EEW67688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus helveticus DSM 20075]
 gi|328468659|gb|EGF39653.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus MTCC
           5463]
          Length = 375

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 71/221 (32%), Gaps = 40/221 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     S +        TA ++  
Sbjct: 5   SKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGVC-------TATEDYE 57

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
            V  V  ++ I +  ++++                  R          + ++    + A 
Sbjct: 58  DVKKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAM 117

Query: 116 TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            ++A  I   H      D    T  MR +    ++   LS +    +      +  P   
Sbjct: 118 DLDADYIAMGHYAKTVKDADGLTHMMRPKDGNKDQTYFLSQLNQDQIKK----VIFPLAN 173

Query: 172 CRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +  +R   L   ++    +D +      ER   R+F+ +
Sbjct: 174 LTKPQVREIALANGLATAKKKDSTGICFIGERNF-RKFLSE 213


>gi|312110111|ref|YP_003988427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
 gi|311215212|gb|ADP73816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. Y4.1MC1]
          Length = 371

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 60/198 (30%), Gaps = 40/198 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YEDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A +I A  + T H       D  E   +R      ++   L+ +    L      +  P 
Sbjct: 117 ALSIGADYVATGHYARIEYRD-GEYKLLRGVDQKKDQTYFLNQLGQEQLSK----VMFPL 171

Query: 170 LRCRREDIRSFLLQRNIS 187
               +  +R       ++
Sbjct: 172 GHLEKAQVRQIAKDAGLA 189


>gi|161507327|ref|YP_001577281.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus DPC
           4571]
 gi|205816860|sp|A8YUQ2|MNMA_LACH4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160348316|gb|ABX26990.1| tRNA-methyltransferase [Lactobacillus helveticus DPC 4571]
          Length = 375

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 71/221 (32%), Gaps = 40/221 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     S +        TA ++  
Sbjct: 5   SKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGVC-------TATEDYE 57

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
            V  V  ++ I +  ++++                  R          + ++    + A 
Sbjct: 58  DVKKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAM 117

Query: 116 TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            ++A  I   H      D    T  MR +    ++   LS +    +      +  P   
Sbjct: 118 DLDADYIAMGHYAKTVKDADGLTHMMRPKDGNKDQTYFLSQLNQDQIKK----VIFPLAN 173

Query: 172 CRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +  +R   L   ++    +D +      ER   R+F+ +
Sbjct: 174 LTKPQVREIALANGLATAKKKDSTGICFIGERNF-RKFLSE 213


>gi|330810455|ref|YP_004354917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327378563|gb|AEA69913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 374

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 58/197 (29%), Gaps = 40/197 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--------DE 69
               ++V +SGG DS    + L     +     +K           E           D+
Sbjct: 10  SKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMKNW---------EEDDGTEYCTAMDD 60

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
           +     VC ++ I     +     W N          A           RE ++    ++
Sbjct: 61  LADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDY 120

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A  + A LI T H     D    T  ++      ++   L  +    +         P  
Sbjct: 121 AMMLGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKT----LFPVG 176

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R+   +  ++
Sbjct: 177 ELEKPEVRAIAEKHQLA 193


>gi|313205278|ref|YP_004043935.1| exsb protein [Paludibacter propionicigenes WB4]
 gi|312444594|gb|ADQ80950.1| exsB protein [Paludibacter propionicigenes WB4]
          Length = 214

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 48/197 (24%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDVC 77
           I++  SGG DS     AL+              A++ +    H LR     E+ Y +  C
Sbjct: 4   IVILYSGGMDSSV---ALYEHADRIR------RALTFNYGSKHNLR-----EMEYAARNC 49

Query: 78  SRLRIAHSVVSWKNSK---PQTGLMAAAR--EARYA------------------LISEHA 114
            RL I H V+    +K       L +        Y                   + +  A
Sbjct: 50  KRLGIEHHVIELDMNKMGFVSDLLQSGGDIPNGHYEDQNMIKTVVPFRNGIMLSIAAGIA 109

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           ++I    +M ++   D           D  E+ +       ++    +  I  P+    +
Sbjct: 110 ESIGCDKLMISNHAGDHA------IYPDCREEFIQTMNKAISLGTYNHCEILAPYTNLTK 163

Query: 175 EDIRSFLLQRNISWCED 191
            +I     +  + + ED
Sbjct: 164 REIALIGKEIGVPF-ED 179


>gi|307565167|ref|ZP_07627671.1| protein ExsB [Prevotella amnii CRIS 21A-A]
 gi|307346125|gb|EFN91458.1| protein ExsB [Prevotella amnii CRIS 21A-A]
          Length = 234

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 59/186 (31%), Gaps = 39/186 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL              I   AIS D+  +  +K+E+      C +L I H 
Sbjct: 25  VSGGLDSITLLY--------EKADDIAL-AISFDYG-QNHSKNELPLAEYHCKKLGIPHI 74

Query: 86  VVSWK---NSKPQTGLM--AAAREARYA------------------LISEHAKTINATLI 122
            +  K        + L    A  E  Y                   +    A++ N   +
Sbjct: 75  TIPLKFMNVYLKSSLLEGSEAIPEGHYEEENMKSTVVPFRNGIMLSIAIGIAESHNLKYV 134

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           M A+   D          R      M  +    T +   N+ +  P+    + +I    +
Sbjct: 135 MIANHGGDHT---IYPDCRPEFISAMNKAACAGTYI---NVKVVAPYTNISKTEIVKRGV 188

Query: 183 QRNISW 188
              I +
Sbjct: 189 ALGIDY 194


>gi|296119548|ref|ZP_06838106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295967431|gb|EFG80698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 361

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 58/194 (29%), Gaps = 43/194 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H----CLRETAK-----DEV 70
            +LVA+SGG DS           +       +   + +  H      RE A+     ++ 
Sbjct: 2   RVLVAMSGGVDSSV-------AAARAVEAGHEVVGVHLALHKDAQQTREKARGCCSLEDS 54

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAR------------EARYALISEHA 114
                +C +L I   V  +     +  +     + AR            + ++A +    
Sbjct: 55  ADARRICDKLGIPFYVWDFSEEFKEAVITDFVDSYARGETPNPCLRCNEKIKFAALLRKG 114

Query: 115 KTINATLIMTAH--TFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             +    + T H  T D D          R   ++    S +   I  +   +   P   
Sbjct: 115 MALGFDAVATGHYATLDKD-------GYMRRSLDENKDQSYVLGVITAEELSYCYFPIGD 167

Query: 172 CRREDIRSFLLQRN 185
             +  IR    +  
Sbjct: 168 TPKPQIREEAKRHG 181


>gi|159118813|ref|XP_001709625.1| Hypothetical protein GL50803_113986 [Giardia lamblia ATCC 50803]
 gi|157437742|gb|EDO81951.1| hypothetical protein GL50803_113986 [Giardia lamblia ATCC 50803]
          Length = 272

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 91  NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150
               +    +     R   ++          +   H   D LET+ +      +  G+  
Sbjct: 112 QEARKASACSVCSRCRRGTLASFVSAGGYDALALGHHLLDDLETLAITGVHGASFFGLRG 171

Query: 151 SGMCDTILY----DLNLWISRPFLRCRREDIRSFLLQRNIS 187
              C+   +       + I RP L     +I   +L   +S
Sbjct: 172 YYNCEVRDFASRARHRVCILRPMLSVHVSEISRVVLHNGLS 212


>gi|148380860|ref|YP_001255401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153934263|ref|YP_001385167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153935159|ref|YP_001388636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. Hall]
 gi|205810535|sp|A7FXG3|MNMA2_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|205810559|sp|A5I5Y9|MNMA2_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|148290344|emb|CAL84469.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152930307|gb|ABS35807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152931073|gb|ABS36572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. Hall]
          Length = 353

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 35/129 (27%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDEVRYV 73
           + +A+SGG DS      L                I +D   R+         A ++ R V
Sbjct: 6   VALAMSGGVDSSVSAYILKE-------RGYDVIGIYMD-LWRDERKGYCNKSAAEDARRV 57

Query: 74  SDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAARE-ARYALISEHAKTI 117
                +L I   V++ +                S        A  +  ++      AK  
Sbjct: 58  ---AEKLDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEF 114

Query: 118 NATLIMTAH 126
            A  + T H
Sbjct: 115 GADFMATGH 123


>gi|159185866|ref|NP_356917.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Agrobacterium tumefaciens str. C58]
 gi|25298384|pir||AC3012 hypothetical protein trmU [imported] - Agrobacterium tumefaciens
           (strain C58, Dupont)
 gi|159141000|gb|AAK89702.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Agrobacterium tumefaciens str. C58]
          Length = 380

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 48/195 (24%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEVRYVSDVCSRL 80
           SGG DS  +   L     D     ++      DH     R  +     ++     VC  L
Sbjct: 2   SGGVDSSVVAGILKREGYDVLGITLQLY----DHGAAVHRAGSCCAGQDIDDARRVCETL 57

Query: 81  RIAHSVVSWKNSKPQT--GLMAAAREA--------------RYALISEHAKTINATLIMT 124
            I H V+ ++    +T     A A                 ++A +   A+ + A  + T
Sbjct: 58  GIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATAQELGADALAT 117

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-------------WISRPFLR 171
            H         Y+RS+ +      G   +   I  D +              ++  P   
Sbjct: 118 GH---------YIRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLGG 168

Query: 172 CRREDIRSFLLQRNI 186
             + + R+   +  +
Sbjct: 169 LSKAETRALAEEMGL 183


>gi|225176011|ref|ZP_03730003.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168599|gb|EEG77401.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 511

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 36/198 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+VR    ++     ++  +SGG DS    + +H  + DR       + I VDH  LR+ 
Sbjct: 204 ETVRQIRETVGEDEQVVCGLSGGVDSSVAAVLVHKAIGDR------LTCIFVDHGLLRKN 257

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEH 113
              E   V         +   V+         G +A              E       E 
Sbjct: 258 ---EAEQVMETFSGDFNMK--VIKADEQDNFLGKLAGVTDPEEKRKIIGNEFIRVFEREA 312

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFL 170
           AK      ++    + D +E            +   L         +  D+   +  P  
Sbjct: 313 AKIAQIDYLVQGTLYTDVIE---------SGTETAALIKSHHNVGGLPEDMKFKLIEPLN 363

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R    +  +  
Sbjct: 364 HLFKDEVRKVGEELGMPH 381


>gi|154503928|ref|ZP_02040988.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149]
 gi|153795527|gb|EDN77947.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149]
          Length = 356

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 64/199 (32%), Gaps = 44/199 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETAK 67
           + ++V +SGG DS      L                 +    + +         L   A 
Sbjct: 2   SKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEEQAAQEENGGCC---GLS--AV 56

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           D+ R V    + L I + V+++K    +                    A  R  ++  + 
Sbjct: 57  DDARRV---AAALEIPYYVMNFKKEFKENVIDYFVEEYQNGRTPNPCIACNRYVKWESLL 113

Query: 112 EHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISR 167
           + + +I A  I T H     QLE      +R       +   L  +    L    +    
Sbjct: 114 QRSLSIGAEYIATGHYARVVQLENGRYTLRRSATLAKDQTYALYNLTQEQLKRTLM---- 169

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P  +  ++++R+   + N+
Sbjct: 170 PVGKYTKDEVRAIAEKINL 188


>gi|20094490|ref|NP_614337.1| ATPase [Methanopyrus kandleri AV19]
 gi|19887592|gb|AAM02267.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 310

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 24/136 (17%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGK------IKFSAISVDHCLRETAKDEVR 71
               + +  SGG DS    +AL   L +           ++   + V    R   K+   
Sbjct: 73  PKGDLAIGFSGGKDSFTCALALEPFLREWDVNPKLVTVDVRVRGVEV---WRPYRKE--- 126

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAREARYALISEHAKTINATLIMTA 125
            +  +   L     +V  +    +                R  +++         +++  
Sbjct: 127 -LDRMAKALGYEFELVRAEEDVAEPSEELNKPPCKICSAIRRRILA-----ERHDVVVYG 180

Query: 126 HTFDDQLETVYMRSQR 141
           HT +D +ET+ M   R
Sbjct: 181 HTAEDAIETLLMSVNR 196


>gi|327439665|dbj|BAK16030.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Solibacillus silvestris StLB046]
          Length = 372

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 38/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            +++ +SGG DS      L         +         +F   +        A ++   V
Sbjct: 11  RVVIGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 62

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYALISEHAKTI 117
             VC+++ I +  V+++           L    A R          E ++    EHA  +
Sbjct: 63  IAVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHALAL 122

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A  + T H      D+     +R   +  ++   L+ +    L      +  P     +
Sbjct: 123 GADYLATGHYARVAHDENGVKMLRGIDNNKDQTYFLNQLTSEQLEK----VMFPIGHLPK 178

Query: 175 EDIRSFLLQRNIS 187
            ++R    +  ++
Sbjct: 179 PEVRKIAEEAGLA 191


>gi|238026928|ref|YP_002911159.1| GMP synthase [Burkholderia glumae BGR1]
 gi|237876122|gb|ACR28455.1| GMP synthase, large subunit [Burkholderia glumae BGR1]
          Length = 539

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 27/200 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVALIREQVGSEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  -LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYA 108
            LR     E + V D    RL     VV    S+   G +A             RE    
Sbjct: 259 LLRLN---EGQMVLDMFAGRLH--AKVVHVDASEQFLGQLAGVTDPEAKRKIIGREFVEV 313

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             +E  K  NA  +     + D +E+      +      +        +   L L +  P
Sbjct: 314 FQAEARKLGNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEP 370

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R   +   +  
Sbjct: 371 LRDLFKDEVRELGVALGLPP 390


>gi|307545655|ref|YP_003898134.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Halomonas elongata DSM 2581]
 gi|307217679|emb|CBV42949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halomonas elongata DSM 2581]
          Length = 370

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 42/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L     D     +K           E        AK+++  
Sbjct: 6   GKVIVGMSGGVDSSVSAQLLLEQGFDVEGLFMK--------NWDEDDGTEYCTAKEDLAD 57

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC++L I     +     W N          A           RE ++ +  E+A+ 
Sbjct: 58  AEAVCAKLGIHLHTANFAAEYWDNVFEHFLAEYQAGRTPNPDILCNREIKFKVFLEYAEM 117

Query: 117 INATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + A  I T H       D       ++      ++   L  + +  +         P   
Sbjct: 118 LGADWIATGHYVRRAERDGHA--RLLKGLDANKDQSYFLHAVPEAAIARS----LFPVGE 171

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  ++
Sbjct: 172 LEKSEVRDIAERHGLA 187


>gi|198274021|ref|ZP_03206553.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135]
 gi|198273099|gb|EDY97368.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135]
          Length = 375

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 50/191 (26%), Gaps = 31/191 (16%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRYVSD 75
               +LV +SGG DS    I L           +      V            EV    +
Sbjct: 4   REKRVLVGMSGGIDSSAACIMLQE--QGYEVVGVTMRTWDVASHFTPGNDQPNEVIEAQE 61

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINA 119
           + +RL I H V   +    Q  +          R            +  ++ E A   N 
Sbjct: 62  LAARLGIEHHVADVRTEFRQVIVQYFIDEYMRGRTPNPCVMCNPLFKERILCEWADKCNC 121

Query: 120 TLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRCRR 174
             I T H     D      +   R        L      +       + R   P     +
Sbjct: 122 AWIATGHYCQLKD------LNGYRYILTGDDPLKDQSYFLWKLPQEILKRMMFPLGGMTK 175

Query: 175 EDIRSFLLQRN 185
             +R +L  + 
Sbjct: 176 ASVRDYLASKG 186


>gi|170760258|ref|YP_001786566.1| hypothetical protein CLK_0618 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407247|gb|ACA55658.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A3
           str. Loch Maree]
          Length = 266

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + VA SGG DS  LL A    L D +   I  + +                   ++ +
Sbjct: 16  GSVAVAFSGGVDSTLLLKAAKEALGDNA---ISITVV------SPYIPKWEIEEAKELAN 66

Query: 79  RLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDD 130
            + I    +     +  +          +  + S+    AK      I+     DD
Sbjct: 67  NIGIKSYFLEVPMLEEIRFNPEDRCYICKKGVFSKIKELAKEKGVKYIVDGTNLDD 122


>gi|163731902|ref|ZP_02139349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter litoralis Och 149]
 gi|161395356|gb|EDQ19678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter litoralis Och 149]
          Length = 380

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 65/217 (29%), Gaps = 52/217 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDEVRY 72
            ++VA+SGG DS  +   L     D     ++      DH             A  ++  
Sbjct: 22  RVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLY----DHG--AALAKKGACCAGLDIHD 75

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKT 116
              V  ++   H V+ ++N      +   A                   ++  + E AK 
Sbjct: 76  ARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRCNERVKFKDLLETAKD 135

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLNLWIS 166
           ++A  + T H             QR     G  L    D          +   +   ++ 
Sbjct: 136 LDADCMATGH-----------YIQRKSGPCGAELHSAADANRDQSYFLFSTTPEQLAFLR 184

Query: 167 RPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            P      +ED R+   +  +S    P + D  F   
Sbjct: 185 FPLGHLPSKEDTRALAEKYGLSVANKPDSQDICFVPN 221


>gi|205814656|sp|B1X0U7|MNMA_CYAA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 355

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 49/199 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
             ++V +SGG DS     +LH          +   +  G+                  + 
Sbjct: 2   KKVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLMKGKGQCC-----------SEGMVDA 50

Query: 71  RYVSDVCSRLRIAHSVVSWK-----------NSKPQTGL----MAAA-REARYA-LISEH 113
            +   +C +L + H +V  +            S  ++G+     +   R  ++  +++  
Sbjct: 51  AF---ICEQLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYA 107

Query: 114 AKTINATLIMTAHTF----DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + +N   I T H      D+Q      +R+     ++   L  +   IL         P
Sbjct: 108 KEELNCDRIATGHYARIRYDEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKGT----IFP 163

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +E+ R    + ++ 
Sbjct: 164 LGEQTKEETRRIAAEFDLK 182


>gi|209545327|ref|YP_002277556.1| GMP synthase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533004|gb|ACI52941.1| GMP synthase, large subunit [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 541

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   H++  +SGG DS    + +H  + D      + + I VD   LR    +EV 
Sbjct: 237 IREQVGSGHVICGLSGGVDSSVAAVLIHEAIGD------QLTCIFVDPGILRAGEAEEV- 289

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V     R  I        +         + P+       R        E AK   A  +
Sbjct: 290 -VKTFRGRFNIKLVHRDASDLFLSALEGVTDPEIKRKTIGRLFVEVFEEEAAKLGGADFL 348

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + + +  P     ++++R    
Sbjct: 349 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPDRMKMQLVEPLRELFKDEVRELGR 405

Query: 183 QRNIS 187
           +  I 
Sbjct: 406 ELGIP 410


>gi|114766932|ref|ZP_01445852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelagibaca bermudensis HTCC2601]
 gi|114540839|gb|EAU43901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. HTCC2601]
          Length = 380

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 55/233 (23%)

Query: 5   PIESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           P+++       L  P     ++VA+SGG DS  +   L     D     ++      DH 
Sbjct: 2   PLDAPTLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLY----DHG 57

Query: 62  LRET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------- 102
                       A  ++     V  ++   H V+ ++N      +   A           
Sbjct: 58  --AALAKKGACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVP 115

Query: 103 -----REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-- 155
                   ++  + E AK ++A  + T H             QR   ++G  L    D  
Sbjct: 116 CIRCNERVKFKDLLETAKDLDADCMATGH-----------YIQRMVGDQGAELHSAADAN 164

Query: 156 --------TILYDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
                   +   +   ++  P      + + R    +  +S  + P + D  F
Sbjct: 165 RDQSYFLFSTTPEQLDYLRFPLGHLKSKAETRELAAKYGLSVADKPDSQDICF 217


>gi|313836422|gb|EFS74136.1| NAD+ synthetase [Propionibacterium acnes HL037PA2]
 gi|314929035|gb|EFS92866.1| NAD+ synthetase [Propionibacterium acnes HL044PA1]
 gi|314971017|gb|EFT15115.1| NAD+ synthetase [Propionibacterium acnes HL037PA3]
 gi|328906681|gb|EGG26456.1| NAD synthetase [Propionibacterium sp. P08]
          Length = 689

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 49/201 (24%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------DHCL 62
           +R  + S+  P  I++ VSGG DS   L+     +      +    A ++      +H  
Sbjct: 360 LRRRLESIGSP-RIVIGVSGGLDSTHALLVAAKAMDQMGRPRTDILAFTMPGFATTNH-- 416

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------------TGLMAAAREA 105
                       D+C  L I   V+  + +  Q                           
Sbjct: 417 ------TKNNALDLCHALGIPCEVLDIRPAATQMLKGMGHPAGDGAEVYDVTFENVQAGL 470

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           RY  +   A      ++ T     D  E         +   G+G         Y +N  +
Sbjct: 471 RYDYLFRIANQRGGIVLGTG----DLSE-----LALGWCTFGVG----DQMSHYGVNTGV 517

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
            +  +    + +  + +    
Sbjct: 518 PKTLI----QHLIRWCISSGQ 534


>gi|15677751|ref|NP_274914.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Neisseria meningitidis MC58]
 gi|13627136|sp|Q9JXR2|GUAA_NEIMB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|7227178|gb|AAF42250.1| GMP synthase [Neisseria meningitidis MC58]
 gi|325133559|gb|EGC56222.1| GMP synthase [Neisseria meningitidis M13399]
 gi|325139574|gb|EGC62114.1| GMP synthase [Neisseria meningitidis CU385]
 gi|325143631|gb|EGC65950.1| GMP synthase [Neisseria meningitidis M01-240013]
 gi|325200972|gb|ADY96427.1| GMP synthase [Neisseria meningitidis H44/76]
 gi|325206827|gb|ADZ02280.1| GMP synthase [Neisseria meningitidis M04-240196]
          Length = 521

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---ESKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|323702190|ref|ZP_08113857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532877|gb|EGB22749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 366

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 74/242 (30%), Gaps = 56/242 (23%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDH--CLRETAKD 68
           +     ++ A+SGG DS      L     +             + +  D+  C   +A D
Sbjct: 1   MTTKGKVIAAMSGGVDSSVTAALLQQQGYEVVGVTMQIWDPDVTVVDGDYVGCCSLSAVD 60

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISE 112
           + R V+++   L I + V +++    +  +                 A  R  ++  + +
Sbjct: 61  DARRVANI---LGIPYYVFNFRELFTEKVIQYFVDEYLRGRTPNPCIACNRFIKFEALLQ 117

Query: 113 HAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISR 167
            A+ +    I T H       ++ +   +R  RD  +     L G     +    +    
Sbjct: 118 KARQMGFDYIATGHYARLGYSEEYKRYTVRKARDERKDQTYVLYGFTQDQIAHTLM---- 173

Query: 168 PFLRCRREDIRSFLLQRNIS-----------WCEDPSNTDDRFERVRVRRFVRDIDLHAL 216
           P     +E +R    +  +            +  D             R F+ +  +  +
Sbjct: 174 PLADYTKEQVREMARRWGLPTATKPESQEICFVHD----------NNYRNFLEERSVEGI 223

Query: 217 YL 218
             
Sbjct: 224 KP 225


>gi|188994499|ref|YP_001928751.1| GMP synthase [Porphyromonas gingivalis ATCC 33277]
 gi|226739658|sp|B2RIF9|GUAA_PORG3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|188594179|dbj|BAG33154.1| glutamine-hydrolyzing GMP synthase [Porphyromonas gingivalis ATCC
           33277]
          Length = 506

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S IE+    +R  +    +++A+SGG DS  + + L+  +          + I VDH L
Sbjct: 197 SFIEATVQELRERLGDDKVILALSGGVDSSVVAVLLNKAIGR------NLTCIFVDHGL 249


>gi|307297502|ref|ZP_07577308.1| GMP synthase, large subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916762|gb|EFN47144.1| GMP synthase, large subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 501

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 28/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++ +V  + ++  +SGG DS    +     + D       F+ I V+H L R+    EV 
Sbjct: 200 IKRIVGSSKVVGGLSGGVDSTVAAVLTSKAVGD------AFTGIFVNHGLMRKNEDIEV- 252

Query: 72  YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYAL---ISEHAKTINATLIM 123
               +   L I    V      ++  K         +             A  +NA+ ++
Sbjct: 253 -CEAL-RSLGIKLINVDASEEFFRELKGIDNPEEKRKIIGKTFIKVFEREANKLNASFLL 310

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
               + D +E+         A K             +   +NL +  P     ++++R+ 
Sbjct: 311 QGTIYSDVIES-------GAASKNSAKIKSHHNVGGLPDKMNLKLLEPIRELFKDEVRNL 363

Query: 181 LLQRNISW 188
                I  
Sbjct: 364 GYSLGIEP 371


>gi|224282873|ref|ZP_03646195.1| GMP synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|310287318|ref|YP_003938576.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium bifidum S17]
 gi|313140034|ref|ZP_07802227.1| GMP synthase [Bifidobacterium bifidum NCIMB 41171]
 gi|309251254|gb|ADO53002.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium bifidum S17]
 gi|313132544|gb|EFR50161.1| GMP synthase [Bifidobacterium bifidum NCIMB 41171]
          Length = 520

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 63/194 (32%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREKVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNSKPQT--GLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +   +   G+    R              +A+  ++ E  
Sbjct: 260 QVKHDFVAATGIRLITVDAADDFLEALKGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 320 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDIKFQLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|34540397|ref|NP_904876.1| GMP synthase [Porphyromonas gingivalis W83]
 gi|44887930|sp|Q7MWL9|GUAA_PORGI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|34396710|gb|AAQ65775.1| GMP synthase [Porphyromonas gingivalis W83]
          Length = 506

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S IE+    +R  +    +++A+SGG DS  + + L+  +          + I VDH L
Sbjct: 197 SFIEATVQELRERLGDDKVILALSGGVDSSVVAVLLNKAIGR------NLTCIFVDHGL 249


>gi|148263558|ref|YP_001230264.1| tRNA-specific 2-thiouridylase MnmA [Geobacter uraniireducens Rf4]
 gi|205816712|sp|A5GE36|MNMA_GEOUR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146397058|gb|ABQ25691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter uraniireducens Rf4]
          Length = 375

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 40/202 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRET-------- 65
             +++A+SGG DS      L     +      + +   +F+A        E         
Sbjct: 8   KRVVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYTRFTA--------EEGEKFDTCC 59

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAAREA-RYAL 109
           + D++     V  +L I   VV+++                            +  ++ L
Sbjct: 60  SLDDIHDARRVAEQLEIPFYVVNFEEEFQNLVIDDFVNEYLLGRTPNPCVRCNQWIKFEL 119

Query: 110 ISEHAKTINATLIMTAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           + + A+ + A +I T H    +Q      R  +           +       L + +  P
Sbjct: 120 LLKKARGLGADMIATGHYARTEQDADGRYRLMKGVDPAKDQSYFLFTLTQEQLAMTLF-P 178

Query: 169 FLRCRREDIRSFLLQRNISWCE 190
                ++++R+      +   E
Sbjct: 179 LGGMTKQEVRALAAGYGLRVAE 200


>gi|328953724|ref|YP_004371058.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM
           11109]
 gi|328454048|gb|AEB09877.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM
           11109]
          Length = 351

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 57/187 (30%), Gaps = 36/187 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA+SGG DS      L +   +     +  +              ++  +  +C  L
Sbjct: 7   RVAVALSGGLDSTVAAALLLNQGFEVQGVHLTLT----------EKSADISGIESLCQFL 56

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAKTINATLIMT 124
            IA+  +  +       +   A + R                +  + +  ++     + T
Sbjct: 57  GIAYFQLDLRREFKARIIADFAAQYRLGLTPNPCVRCNELIKFGFLFQAVRSQGFDYLAT 116

Query: 125 AHTFDDQLETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H    ++E      M   +           +   +  D    +  P  R  +  +R   
Sbjct: 117 GHYA--RVEAAPNGMMGLWQGVDPDKEQSYFLHR-LSPDCLPAVLLPLGRLTKSQVR--- 170

Query: 182 LQRNISW 188
            +++++W
Sbjct: 171 -EKSLAW 176


>gi|257051513|ref|YP_003129346.1| GMP synthase subunit B [Halorhabdus utahensis DSM 12940]
 gi|256690276|gb|ACV10613.1| GMP synthase, large subunit [Halorhabdus utahensis DSM 12940]
          Length = 305

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 70/189 (37%), Gaps = 20/189 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + I   +  + + +  +  ++A+SGG DS       +  + D      + + + VD  L 
Sbjct: 6   TFIPEAKAEIDAQIGDSKAVIALSGGVDSSTAAALAYDAIGD------QLTPVYVDTGLM 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTIN 118
           R+   +++R   D    LRI  +   + +           R A            A+ ++
Sbjct: 60  RKGETEQIRETFDYMDSLRIVDATDRFLDELEGVTDPEEKRHAIGEQFIREFETVAREVD 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  ++    + D++E           +    + G+ D + +D    I  P     ++++R
Sbjct: 120 ADYLVQGTIYPDRIE------SEGTIKSHHNVGGLPDVVDFDG---IVEPMRDLYKDEVR 170

Query: 179 SFLLQRNIS 187
               + ++ 
Sbjct: 171 EVARELDLE 179


>gi|227540223|ref|ZP_03970272.1| GMP synthase [Sphingobacterium spiritivorum ATCC 33300]
 gi|300771945|ref|ZP_07081816.1| GMP synthase (glutamine-hydrolyzing) [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|227239947|gb|EEI89962.1| GMP synthase [Sphingobacterium spiritivorum ATCC 33300]
 gi|300761331|gb|EFK58156.1| GMP synthase (glutamine-hydrolyzing) [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 516

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E+    ++  +   H+++A+SGG DS    + LH  +            I VDH L
Sbjct: 200 VETTVADLKKQLGNDHVILALSGGVDSTVAGVLLHQAIGK------NLHCIFVDHGL 250


>gi|210630569|ref|ZP_03296519.1| hypothetical protein COLSTE_00404 [Collinsella stercoris DSM 13279]
 gi|210160427|gb|EEA91398.1| hypothetical protein COLSTE_00404 [Collinsella stercoris DSM 13279]
          Length = 563

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 63/191 (32%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
            R+ V    +++A+SGG DS  +          R+ G+ + + + ++H  LR++  ++V 
Sbjct: 243 FRAAVGEDRVILALSGGVDSSVVAAL-----GARAVGR-QMTCVFINHGLLRKSEPEQVE 296

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTINAT--- 120
            V     +  +    V  +          T      R             AK +      
Sbjct: 297 EV--FTKQFDVDFVHVHAEERYAALLDGVTDPEEKRRIIGTQFWNEFFAVAKDLETDGRP 354

Query: 121 --LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISRPFLRCRRED 176
              +     + D +E+      R    K   +    + I +   +   +  P     +++
Sbjct: 355 VKYLAQGTIYPDIIES----GARKTGGKTATIKSHHNLIPFPEGVHFDLIEPLDHFFKDE 410

Query: 177 IRSFLLQRNIS 187
           +R   L   + 
Sbjct: 411 VRELGLALGLP 421


>gi|126656453|ref|ZP_01727714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. CCY0110]
 gi|126622139|gb|EAZ92846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. CCY0110]
          Length = 349

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 70/197 (35%), Gaps = 45/197 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAK--DEVRY 72
             ++V +SGG DS        + L  + +  I  +       L     +  ++   +  +
Sbjct: 2   KKVVVGLSGGVDSSV----AAASLQHQGYTVIGLTLW-----LMKGKGQCCSEGMVDAAF 52

Query: 73  VSDVCSRLRIAHSVVSWK-----------NSKPQTGL----MAAA-REARYA-LISEHAK 115
              +C +L + H +V  +            S  ++G+     +   R  ++  +++   +
Sbjct: 53  ---ICEQLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYARE 109

Query: 116 TINATLIMTAHTF----DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            +N   I T H      D+Q++    +R+     ++   L  +   IL         P  
Sbjct: 110 ELNCDRIATGHYARIRYDEQMDRYQLLRAIDRNKDQSYFLYDLSQDILKGT----IFPLG 165

Query: 171 RCRREDIRSFLLQRNIS 187
              +E+ R    + ++ 
Sbjct: 166 EQTKEETRRIAAEFDLK 182


>gi|327332315|gb|EGE74051.1| GMP synthase [Propionibacterium acnes HL097PA1]
          Length = 517

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 26/191 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LR+    +V+
Sbjct: 211 IRGQVGDRRVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLRQGEAGQVK 264

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINA----T 120
             +V+   + L +A     + ++      P+T      RE       + AK +NA     
Sbjct: 265 NDFVAATGADLVVADESQRFLDALAGVTDPETKRKIIGREF-IRTFEDVAKRLNADQPID 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E+             +        +  DL   +  P     ++++R+ 
Sbjct: 324 FLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRTLFKDEVRAV 378

Query: 181 LLQRNISWCED 191
            L+  +   ED
Sbjct: 379 GLELGLP--ED 387


>gi|312136706|ref|YP_004004043.1| pp-loop domain protein [Methanothermus fervidus DSM 2088]
 gi|311224425|gb|ADP77281.1| PP-loop domain protein [Methanothermus fervidus DSM 2088]
          Length = 323

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 86/247 (34%), Gaps = 38/247 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +I VA SGG DS  LL     V ++         A++VD  +    K+++     +   +
Sbjct: 20  NIAVAFSGGVDSTLLLKIAKEVSNE-------VIAVTVD--IGAIPKNQITEAKKIAREI 70

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
            + H ++     + +           Y       +                 E       
Sbjct: 71  GVKHKIIKENFLEYEWFQHEK-----YRCYFCKKRMYKLIKNFVG-------EKF----- 113

Query: 141 RDYAEKGMGLSGMCDTIL-----YDLNLWISRPFLR--CRREDIRSFLLQRNISWCEDPS 193
                 G  ++ M +        Y+ N  I  P +      ++   +L  +NI   +D +
Sbjct: 114 --EIIDGTNVTDMLEDRPGIVANYEEN--IKSPLVEAQISHDEAAEYLKNKNIRHLKDTT 169

Query: 194 NTDDRFERVRV-RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
               R ++ ++ +  ++ I+     +K     ++RV+  + +A++  +   +  + +  +
Sbjct: 170 CLATRVKKGKLTKNKIKRINKAENIVKKFFAGNIRVRDLDGIAVIEAEKFNIDEKILEKL 229

Query: 253 SQDILNI 259
            + +  +
Sbjct: 230 CKSLKKL 236


>gi|289581434|ref|YP_003479900.1| argininosuccinate synthase [Natrialba magadii ATCC 43099]
 gi|289530987|gb|ADD05338.1| argininosuccinate synthase [Natrialba magadii ATCC 43099]
          Length = 409

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 19/172 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + +A SGG D+   +  L     +  +G  +   ++VD   +  ++ +     +    L
Sbjct: 3   RVALAFSGGLDTTVCVPLL-----EEEYGYDEVIGVTVDVG-QPASEFDEA--EETADAL 54

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYA---LISEHAKTINATLIMTAHTFDDQLETVYM 137
            + H VV  K+        +    A Y    L +  A+ + A  I+     +D   T   
Sbjct: 55  NLDHYVVDAKDEFADLCFDSVCANATYQGYPLGTALARPVIAEAILEVAEENDC--TGIA 112

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
                     +      + +  D +L +  P   L   RE  + +  ++ + 
Sbjct: 113 HGCTGKGNDQL----RFEAVWRDSDLEVIAPVRELGLTREWEQEYAAEKGLP 160


>gi|317127134|ref|YP_004093416.1| GMP synthase, large subunit [Bacillus cellulosilyticus DSM 2522]
 gi|315472082|gb|ADU28685.1| GMP synthase, large subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 512

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 20/183 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR LV    +L A+SGG DS  +   +H  + D      +   + +DH  LR+   D V 
Sbjct: 211 VRELVGNKKVLCALSGGVDSSVVAALIHKAIGD------QLICMFIDHGLLRKGEADSVM 264

Query: 72  YVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                   + +       +          P+        E  Y    E  K  +   +  
Sbjct: 265 KTFSEGFDMNVIKIDAQERFLSKLEGVKDPEQKRKIIGNEFIYVFEEEAGKLTDVDFLAQ 324

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
              + D +E            + +        +  D++  +  P     ++++R    + 
Sbjct: 325 GTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDMHFKLIEPLNTLFKDEVREVGTEL 378

Query: 185 NIS 187
            + 
Sbjct: 379 GLP 381


>gi|323466789|gb|ADX70476.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus helveticus H10]
          Length = 375

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 71/218 (32%), Gaps = 40/218 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++                  R          + ++    + A  ++
Sbjct: 61  KVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D    T  MR +    ++   L+ +    +      +  P     +
Sbjct: 121 ADYIAMGHYAKTVKDADGLTHMMRPKDGNKDQTYFLNQLNQDQIKK----VIFPLANLTK 176

Query: 175 EDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +R   L   ++    +D +      ER   R+F+ +
Sbjct: 177 PQVREIALANGLAIAKKKDSTGICFIGERNF-RKFLSE 213


>gi|168181589|ref|ZP_02616253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
 gi|237796359|ref|YP_002863911.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum Ba4 str.
           657]
 gi|182675018|gb|EDT86979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
 gi|229264171|gb|ACQ55204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Ba4 str. 657]
          Length = 353

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 35/133 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDE 69
               + +A+SGG DS      L                I +D   R+         A ++
Sbjct: 2   SKGTVALAMSGGVDSSVSAYILKE-------RGYDVIGIYMD-LWRDEREEYCNKSAAED 53

Query: 70  VRYVSDVCSRLRIAHSVVSW---------------KNSKPQTGLMAAARE-ARYALISEH 113
            R V     +L I   V++                  S        A  +  ++      
Sbjct: 54  ARRV---AEKLDIPFHVINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNA 110

Query: 114 AKTINATLIMTAH 126
           AK   A  + T H
Sbjct: 111 AKEFGADFMATGH 123


>gi|168035636|ref|XP_001770315.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678346|gb|EDQ64805.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 376

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 46/201 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEVR 71
           +I V +SGG DS   L  L +     +   +K          +E           +D+++
Sbjct: 2   NIAVLLSGGVDSSVALRLLCAAGHSCTAYYLKIW-------FQEDFENFWSECPWEDDLK 54

Query: 72  YVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAARE----------ARYALISEHAK 115
               VC  + +   VV + +             + A R            ++    +H K
Sbjct: 55  NAQAVCDEVGVELRVVHFTDEYWNLVVSHSISEIQAGRTPNPDILCNTCVKFGAFLDHIK 114

Query: 116 TINATLIMTAH--------TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
                 + + H          D   E  T  +    +  ++   LS +    L      +
Sbjct: 115 DEQFDRVASGHYARIRKIYNCDTGAEERTELLLCPDEVKDQTYFLSHLTQEQLSR----L 170

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P     + ++R       +
Sbjct: 171 IFPLGGFTKAEVRQLAEVMGL 191


>gi|76803253|ref|YP_331348.1| argininosuccinate synthase [Natronomonas pharaonis DSM 2160]
 gi|119361295|sp|Q3IME2|ASSY_NATPD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|76559118|emb|CAI50717.1| argininosuccinate synthase [Natronomonas pharaonis DSM 2160]
          Length = 400

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 58/186 (31%), Gaps = 47/186 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + +A SGG D+   +  L     +  +G  +   ++VD   +  A  E +   +    L
Sbjct: 6   RVALAFSGGLDTTVCVPLL-----EEEYGYDEVIGVTVDVG-QPEA--EFKEAEETAEAL 57

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYA---------------LISEHAKTINATLIMTA 125
            + H VV  K    +    A    A Y                 I E AK    + +   
Sbjct: 58  DLEHHVVDAKPEFAELCFDAVRANASYQGYPLGTALARPVIAEAILEVAKEEGCSGVAHG 117

Query: 126 HT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFL 181
            T   +DQL                      + +  D +L +  P   L   R   + + 
Sbjct: 118 STGKGNDQL--------------------RFEAVWRDSDLEVIAPVRELGLTRTFEQEYA 157

Query: 182 LQRNIS 187
            +R + 
Sbjct: 158 EERGLP 163


>gi|312622345|ref|YP_004023958.1| gmp synthase, large subunit [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202812|gb|ADQ46139.1| GMP synthase, large subunit [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 511

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 23/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++ +V    ++ A+SGG DS    + +H  +            I VDH  L
Sbjct: 200 SFIEEKVNEIKDIVGNQKVVCALSGGVDSSVAAVLVHKAIGK------NLYCIFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH 113
           R+   +EV  V     +  +    V  K+           P+       RE       E 
Sbjct: 254 RKGEAEEVMSVFK--DQFDMNVIKVDAKDRFLEALRGVTDPEEKRKIIGREFIRVFEEEA 311

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +   ++    + D +E+   ++    +   +G  G+ + I ++    I  P     
Sbjct: 312 EKLGDIKFLVQGTIYPDVVESGVGKAATIKSHHNVG--GLPEKIKFEQ---IIEPLRELF 366

Query: 174 REDIRSFLLQRNIS 187
           ++++R   ++  I 
Sbjct: 367 KDEVRRVGIELGIP 380


>gi|289549263|ref|YP_003474251.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermocrinis albus DSM 14484]
 gi|289182880|gb|ADC90124.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Thermocrinis albus DSM 14484]
          Length = 349

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 42/197 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLR-ETAKDEVRYVSDVCS 78
            I V +SGG DS    + L     +     ++F     +   LR   +  +V+    V  
Sbjct: 2   RIAVGMSGGVDSSVTALLLKEEGHEVIGVTLRFYKAVCNTEDLRVCCSPQDVKDAVLVSQ 61

Query: 79  RLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKTIN-ATL 121
           RL I H  + W+                        A   RE +   ++ + + +     
Sbjct: 62  RLGIPHITLDWEKIFYERVIKYFVEGYKEGITPNPCAVCNREVKTGFLARYLRNVALIDR 121

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW--ISR----PFLRC--- 172
           + T H              R     G  L         D + +  + R    P L     
Sbjct: 122 LATGH------------YVRKIQYMGYSLLARGKDTTRDQSYFMALVRGEDIPLLEFPLG 169

Query: 173 --RREDIRSFLLQRNIS 187
              +E++R    ++ + 
Sbjct: 170 DKTKEEVRKIAEEKGLP 186


>gi|257060381|ref|YP_003138269.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8802]
 gi|256590547|gb|ACV01434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanothece sp. PCC 8802]
          Length = 349

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 60/198 (30%), Gaps = 49/198 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
            ++V +SGG DS      LH          +   +  G+                  +  
Sbjct: 3   KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLMKGKGQCC-----------SEGMVDAA 51

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYA-LISEHA 114
           +   +C +L I H +V  ++           +G  A           R  ++  ++    
Sbjct: 52  F---ICEQLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLDYAR 108

Query: 115 KTINATLIMTAHTF----DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + +    I T H      D+  +    +R+     ++   L  +   +L         P 
Sbjct: 109 QELGCDRIATGHYARIRYDEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGT----VFPL 164

Query: 170 LRCRREDIRSFLLQRNIS 187
               +ED R    + ++ 
Sbjct: 165 GDQTKEDTRRIAAEFDLK 182


>gi|70731250|ref|YP_260991.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf-5]
 gi|123654441|sp|Q4K9U2|MNMA_PSEF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|68345549|gb|AAY93155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas fluorescens Pf-5]
          Length = 377

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 42/198 (21%)

Query: 18  YPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKD 68
               ++V +SGG DS    LL+       +  F K             E        A D
Sbjct: 10  QKKRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMK----------NWEEDDGTEYCTAMD 59

Query: 69  EVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISE 112
           ++     VC ++ I     +     W N          A           RE ++    +
Sbjct: 60  DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119

Query: 113 HAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +A  + A LI T H     D    T  ++      ++   L  +    +         P 
Sbjct: 120 YAMMLGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKT----LFPV 175

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R+   + +++
Sbjct: 176 GELEKPEVRAIAEKHDLA 193


>gi|318075485|ref|ZP_07982817.1| GMP synthase [Streptomyces sp. SA3_actF]
 gi|333026600|ref|ZP_08454664.1| putative GMP synthase [Streptomyces sp. Tu6071]
 gi|332746452|gb|EGJ76893.1| putative GMP synthase [Streptomyces sp. Tu6071]
          Length = 529

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V     +  +SGG DS     A+ + L  R+ G  + + + VDH L R+   ++V 
Sbjct: 218 IRARVGTKRAICGLSGGVDS-----AVAAALVQRAIGS-QLTCVYVDHGLMRKGETEQVE 271

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +V+    +L++  +   + ++          R+          +   A ++  A    
Sbjct: 272 KDFVAATGVQLKVVDAADRFLDALAGVSDPEQKRKIIGREFIRVFEQAQAEIV--AENAA 329

Query: 130 DQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           D  +       T+Y          G            +  DL   +  P  +  ++++R+
Sbjct: 330 DGADVAFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFELIEPLRKLFKDEVRA 389

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 390 VGQELGLP 397


>gi|295425684|ref|ZP_06818371.1| GMP synthase [Lactobacillus amylolyticus DSM 11664]
 gi|295064700|gb|EFG55621.1| GMP synthase [Lactobacillus amylolyticus DSM 11664]
          Length = 494

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      LH  +        + + I VDH  LR+   D+V 
Sbjct: 193 IRKEVGDKKVILGLSGGVDSSVTATLLHKAIGQ------QLTCIFVDHGMLRKDEGDQVM 246

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V+  +           P+       +E       E  K  +   +
Sbjct: 247 --KALNKDLGVNIIRVNAADRFLGKLKGVTDPEKKRKIIGKEFIEVFNEEAKKLNDVDFL 304

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D++  +  P  +  ++++R    
Sbjct: 305 AQGTLYTDVIE------SGTNTAQTIKSHHNVGGLPKDMHFKLIEPLRKLFKDEVRELGE 358

Query: 183 Q----RNISWC 189
           +     ++ W 
Sbjct: 359 KLSSTHDLLWR 369


>gi|262306089|gb|ACY45637.1| gln amidotransferase [Peripatus sp. 'Pep']
          Length = 197

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R+ V    +L+ VSGG DS      LH  L        +  A+ +D+   R   K E 
Sbjct: 36  YIRNTVKDNKVLMLVSGGVDSTVCAALLHKALKRH-----QVIAVHIDNGFMR---KKES 87

Query: 71  RYVSDVCSRLRIAHSVVSWKNS 92
             V +  +++ +   VV+  +S
Sbjct: 88  EQVENSLNKIGLKLKVVNASHS 109


>gi|218133009|ref|ZP_03461813.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991882|gb|EEC57886.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC
           43243]
          Length = 375

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 63/205 (30%), Gaps = 42/205 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDE 69
           ++ +     ++V +SGG DS      L     D     ++          ++    + +E
Sbjct: 8   IKEITVKERVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQI--------WQDEDSCSMEE 59

Query: 70  ---------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAARE 104
                    V     V  +L I + V+++KN   +  +                 A  R 
Sbjct: 60  NGGCCGWSAVEDARRVAQQLDIPYYVMNFKNEFRENVIEYFVNEYKNGRTPNPCIACNRY 119

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMR---SQRDYAEKGMGLSGMCDTILYDL 161
            ++  + + +  I A  I T H    ++E          R+        +     +  + 
Sbjct: 120 VKWESLLKRSMEIGADYIATGHYA--RIEQ-LSNGRYVVRNSVTAAKDQTYALYNLTQEQ 176

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI 186
                 P     +E IR    QR +
Sbjct: 177 LRHTLMPIGEYDKEHIRQIAAQRGL 201


>gi|262306081|gb|ACY45633.1| gln amidotransferase [Neogonodactylus oerstedii]
          Length = 197

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V    +L+ VSGG DS      LH  LS+      +  A+ +D+   R+    E 
Sbjct: 36  AIREAVGSNKVLMLVSGGVDSTVCAALLHKALSED-----QVIAVHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVSWKNS 92
             V     +L +   V++ ++ 
Sbjct: 88  LQVEQSLRKLGLKLRVINARHQ 109


>gi|253989217|ref|YP_003040573.1| tRNA -specific 2-thiouridylase MnmA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780667|emb|CAQ83829.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photorhabdus asymbiotica]
          Length = 367

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDNEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    V++                 A R          E ++ A +   
Sbjct: 57  ADAQSVCDKLDIELHTVNFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R   +  ++   L  +    +         P  
Sbjct: 117 AEDLGADYIATGHYVRRKDINGKSQLLRGLDNNKDQSYFLYTLNHQQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 173 ELEKPEVRRIAEKIGL 188


>gi|160931216|ref|ZP_02078618.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753]
 gi|156869771|gb|EDO63143.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753]
          Length = 357

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 72/228 (31%), Gaps = 55/228 (24%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------ 65
              +++ +SGG D S+  L+ L              + +++   LR              
Sbjct: 2   KKKVMLGMSGGVDSSVAALLLLQQ--------GYDVTGVTM--KLRPDQYMAESQSGGCC 51

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYAL 109
           + D++     V  RL I H V+++     +  +   A E                 ++  
Sbjct: 52  SLDDIDDARRVAYRLGIEHLVLNFTQVFSEKVIDYFASEYLAGRTPNPCIACNAHVKFDA 111

Query: 110 ISEHAKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           +   A ++    + T H    T +D+     ++      ++   L  +    L    +  
Sbjct: 112 LLRKALSLEYDYVATGHYAVITQNDEGRW-LLKKAPCSKDQSYVLYHLTQHQLAHTLM-- 168

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSN------TDDRFERVRVRRF 207
             P     + + R    +  +     P +       D+ +    +RR+
Sbjct: 169 --PLAGMEKSEARELAREAGLPVAHKPDSQEICFVQDNDYA-SFIRRY 213


>gi|119473739|ref|XP_001258745.1| GMP synthase [Neosartorya fischeri NRRL 181]
 gi|119406898|gb|EAW16848.1| GMP synthase [Neosartorya fischeri NRRL 181]
          Length = 539

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 29/205 (14%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHC 61
             ++     +R LV    H+L AVSGG DS      +   + DR      F A+ V + C
Sbjct: 214 KFVDQEILRIRKLVGETDHVLGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVNNGC 267

Query: 62  LRETAKDEVRYVSDVCSR-LRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116
           +R     E   V++  ++ L I  +VV     + +           R    A   +  + 
Sbjct: 268 MRLN---ECETVAETLNKHLGINLTVVDACKRFLDGLKGVTDPEKKRMFIGATFIDVFEE 324

Query: 117 INATLIMTAHTFD-------------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
               +   A                 D +E++  +      +    +  +   ++    +
Sbjct: 325 EAEKIEALAEHSGAKVKWFLQGTLYPDVIESISFKGPSATIKTHHNVGALPKRMIEGQGM 384

Query: 164 WISRPFLRCRREDIRSFLLQRNISW 188
            +  P     ++++R    +  I+ 
Sbjct: 385 KLIEPLRELFKDEVRQLGRELGIAH 409


>gi|77463173|ref|YP_352677.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides 2.4.1]
 gi|123592152|sp|Q3J358|MNMA_RHOS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77387591|gb|ABA78776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 379

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 71/239 (29%), Gaps = 58/239 (24%)

Query: 1   MFLSPIESVRFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M   P+ S+ F       PA   ++VA+SGG DS  +   L +   D     ++      
Sbjct: 1   MLDHPLNSLGFA----KPPAVTRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLY---- 52

Query: 59  DHCLRET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL- 109
           DH             A  ++     V   +   H V+ ++N+  +  +   A        
Sbjct: 53  DHG--AALAKKGACCAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGAT 110

Query: 110 ---------------ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154
                          + + AK ++A  + T H             QR     G  L    
Sbjct: 111 PVPCIRCNERVKFKDLLQTAKDLDADCMATGH-----------YIQRKMGPAGPELHSAA 159

Query: 155 DTIL----------YDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
           D              +   ++  P      + + R+   +  +   + P + D  F   
Sbjct: 160 DPARDQSYFLFSTTPEQLAFLRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPN 218


>gi|299138824|ref|ZP_07032001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598978|gb|EFI55139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium sp. MP5ACTX8]
          Length = 375

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 38/198 (19%)

Query: 22  ILVAVSGGSDSMGLLIALH-----------SVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           I VA+SGG DS  +   LH            + + R     +    +V    R  + D+V
Sbjct: 7   IAVAMSGGVDSSAVAALLHAEGRDLIGLTLQLWNQRRLAGREGMPETV--QGRCCSIDDV 64

Query: 71  RYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAR----------EARYALISEHA 114
                V  ++ I + +V+ +        +P      A R            ++  +   A
Sbjct: 65  YDARRVAEQIGIPYYLVNAQERFENEVVRPFVDEYLAGRTPIPCTLCNNHLKFDQLLLTA 124

Query: 115 KTINATLIMTAH----TFDDQLE-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + I A  I T H     +D+  E  V  R      ++   L G+    L         P 
Sbjct: 125 RQIGADRIATGHYARNHYDEARERWVLSRPADKSKDQTYFLFGLTQDQLSRT----LFPL 180

Query: 170 LRCRREDIRSFLLQRNIS 187
              ++  +RS      + 
Sbjct: 181 GEMQKPAVRSMAADHGLE 198


>gi|318058801|ref|ZP_07977524.1| GMP synthase [Streptomyces sp. SA3_actG]
          Length = 527

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V     +  +SGG DS     A+ + L  R+ G  + + + VDH L R+   ++V 
Sbjct: 216 IRARVGTKRAICGLSGGVDS-----AVAAALVQRAIGS-QLTCVYVDHGLMRKGETEQVE 269

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +V+    +L++  +   + ++          R+          +   A ++  A    
Sbjct: 270 KDFVAATGVQLKVVDAADRFLDALAGVSDPEQKRKIIGREFIRVFEQAQAEIV--AENAA 327

Query: 130 DQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           D  +       T+Y          G            +  DL   +  P  +  ++++R+
Sbjct: 328 DGADVAFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFELIEPLRKLFKDEVRA 387

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 388 VGQELGLP 395


>gi|312065441|ref|XP_003135792.1| hypothetical protein LOAG_00204 [Loa loa]
 gi|307769046|gb|EFO28280.1| hypothetical protein LOAG_00204 [Loa loa]
          Length = 996

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +RS+V    +LV VSGG DS      LH  L     G  +  A+ +D
Sbjct: 531 IRSVVVDKKVLVMVSGGVDSTVCAALLHKAL-----GSDRVIAVHID 572


>gi|300215125|gb|ADJ79541.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [Lactobacillus salivarius CECT 5713]
          Length = 518

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  + +      + ++I VDH  LR+    E  
Sbjct: 217 IRETVGDKKVLLGLSGGVDSSVVGVLLHKAIGN------QLTSIFVDHGLLRKG---EAE 267

Query: 72  YVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D +  +  +    V  K          S P+        E       E AK      
Sbjct: 268 QVMDSLGGKFGLNIIKVDAKERFLNKLAGVSDPEKKRKIIGNEFIRVFDDESAKLEGIEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 328 LAQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDVQFKLIEPLNTLFKDEVRELG 381

Query: 182 LQRNISW 188
            +  +  
Sbjct: 382 EKLGMPH 388


>gi|257466420|ref|ZP_05630731.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917577|ref|ZP_07913817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691452|gb|EFS28287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 350

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 47/206 (22%), Gaps = 46/206 (22%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       + VA+SGG DS  +   L           +                ++    
Sbjct: 7   REENKKVRVGVALSGGVDSSTVAYLLKK--QGYDIFGVTMKTCH---------AEDAD-A 54

Query: 74  SDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISEHAKTI 117
             VC  L I H V               V                R  ++  + +     
Sbjct: 55  KKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGKLLDFILGQ 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRRED 176
            A  + T H       T  +       + G          +  +    I  P     +  
Sbjct: 115 GAQYMATGHY------TKLVDGHLSVGDDGGKDQVYFLSQVPKEKLKKIIFPVGELEKTQ 168

Query: 177 IRSFLLQRN-----------ISWCED 191
           +R    +             I + ED
Sbjct: 169 VRELAKELGVRVYAKKDSQEICFVED 194


>gi|210615810|ref|ZP_03290791.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787]
 gi|210150146|gb|EEA81155.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787]
          Length = 362

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 64/203 (31%), Gaps = 50/203 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDHCLRET-------- 65
              ++V +SGG DS      L     D         + +  AI      +E         
Sbjct: 3   KKKVVVGMSGGVDSSVAAYLLKEEGYDVIGVTMQIWQDEDRAI------QEENGGCCGLT 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYAL 109
           A D+ R V    S L I + V+++K    +                    A  R  ++  
Sbjct: 57  AVDDARRV---ASDLGIPYYVMNFKKEFKENVIDYFVDEYLNGRTPNPCIACNRYVKWES 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLETV------YMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           + + +  I A  I T H    ++E +        RS     ++   L  +    L    +
Sbjct: 114 LLKRSMDIGADYIATGHYA--RIEKLPNGRYSLRRSATLAKDQTYALYNLTQEQLKRTLM 171

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
               P     +E++R    +  +
Sbjct: 172 ----PVGAYAKEEVREIAEKIGL 190


>gi|90962508|ref|YP_536424.1| GMP synthase [Lactobacillus salivarius UCC118]
 gi|122448520|sp|Q1WRY8|GUAA_LACS1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|90821702|gb|ABE00341.1| GMP synthase [Lactobacillus salivarius UCC118]
          Length = 518

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  + +      + ++I VDH  LR+    E  
Sbjct: 217 IRETVGDKKVLLGLSGGVDSSVVGVLLHKAIGN------QLTSIFVDHGLLRKG---EAE 267

Query: 72  YVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D +  +  +    V  K          S P+        E       E AK      
Sbjct: 268 QVMDSLGGKFGLNIIKVDAKERFLNKLAGVSDPEKKRKIIGNEFIRVFDDESAKLEGIEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 328 LAQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDVQFKLIEPLNTLFKDEVRELG 381

Query: 182 LQRNISW 188
            +  +  
Sbjct: 382 EKLGMPH 388


>gi|14521010|ref|NP_126485.1| GMP synthase subunit B [Pyrococcus abyssi GE5]
 gi|13626967|sp|Q9V0I7|GUAAB_PYRAB RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|5458227|emb|CAB49716.1| guaA-C GMP synthase [glutamine-hydrolyzing] pyrophosphatase subunit
           (EC 6.3.5.2) [Pyrococcus abyssi GE5]
          Length = 308

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 101/310 (32%), Gaps = 51/310 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E V+  +R  V  +  ++A+SGG DS    +  +  + D+        A+ V+   LR+ 
Sbjct: 9   EKVKE-IRETVGDSKAIIALSGGVDSSTAAVLAYKAIGDK------LHAVFVNTGFLRKG 61

Query: 66  AKDEVRYVSDVCSR------LRIAHSVVSWKNSKPQTGLMAAAREARYAL---ISEHAKT 116
              E  +V              +      +   K  T      +           E A+ 
Sbjct: 62  ---EPEFVVKTFRDEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVFIEVFEEVARE 118

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I A  ++      D +E       +   +    + G+ + +    NL +  P     +++
Sbjct: 119 IGAEYLIQGTIAPDWIE------SQGKIKSHHNVGGLPERL----NLKLIEPLRDLYKDE 168

Query: 177 IRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLR 227
           +R       +         +  + R         VRV   + ++    + +  +    + 
Sbjct: 169 VRELAKFLGLP--------EKIYNRMPFPGPGLAVRV---IGEVTPEKIRIVREANAIVE 217

Query: 228 VKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSM 287
            +V  A       +  +     + +  DI     T+   ++     +    +++P +  +
Sbjct: 218 EEVERAGLRPWQAFAVLLGVKTVGVQGDIRAYKETIAVRIVESLDGMTANAMNVP-WEVL 276

Query: 288 ERVMLFLKSG 297
           +R+   + S 
Sbjct: 277 QRIAFRITSE 286


>gi|325262735|ref|ZP_08129471.1| PP-loop family protein [Clostridium sp. D5]
 gi|324031829|gb|EGB93108.1| PP-loop family protein [Clostridium sp. D5]
          Length = 285

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 46/233 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRETAKDEVRYVSDVCS 78
           I VA SGG+DS  LL         +        A+++    H L     +++     V  
Sbjct: 31  IAVAFSGGADSSLLLKLACECAKKQGK---NVYAMTIQTELHTL-----EDLNIAEKVAK 82

Query: 79  RLRIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATLIMTAHTFDDQ 131
                H V+       + G+           ++  +  I E A     + I+     DD 
Sbjct: 83  ETGSFHEVLYVD-ELEEAGIEMNPVNRCYLCKKLLFTKIREKALQRGISRILEGTNADD- 140

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWC 189
                             L+     I     L I  P       + ++R    +  IS  
Sbjct: 141 ------------------LTMYRPGIQAIRELRIGSPLAEAEMTKAEVRRLAAEFGISVA 182

Query: 190 EDPSNTDDRFER----VRV-RRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
           E P+       R     R+ R  ++  +L   Y++   F ++R++V + +A +
Sbjct: 183 ERPA-APCMATRFPYGTRLDREKMKAAELGENYIRSLGFYNVRLRVQDNLARI 234


>gi|315608141|ref|ZP_07883133.1| transcription regulator ExsB [Prevotella buccae ATCC 33574]
 gi|315250110|gb|EFU30107.1| transcription regulator ExsB [Prevotella buccae ATCC 33574]
          Length = 217

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 43/190 (22%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +I    IS D+        E+ +    C RL I H 
Sbjct: 8   VSGGMDSITLLY--------DKKDEIALG-ISFDYG-SNHNAREIPFAQMHCERLGIKHI 57

Query: 86  VVSWKNSKP--QTGLMAAAR---EARYAL------------------ISEHAKTINATLI 122
           V++        ++ L+  A    E  Y                        A++ N   +
Sbjct: 58  VINLDFMHRYFKSSLLDGADAIPEGHYEADNMKSTVVPFRNGIMLSIAIGIAESHNLKKV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSF 180
           + A+   D   T+Y         +   +  +     Y   +N+ +S P+    +  I S 
Sbjct: 118 LIANHGGDH--TIY------PDCRPEFIHAIDKAARYGTFINVGVSAPYTDITKGQIASI 169

Query: 181 LLQRNISWCE 190
             +  I + E
Sbjct: 170 GKRLGIDYRE 179


>gi|288925099|ref|ZP_06419035.1| ExsB protein [Prevotella buccae D17]
 gi|288338289|gb|EFC76639.1| ExsB protein [Prevotella buccae D17]
          Length = 217

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 63/190 (33%), Gaps = 43/190 (22%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +I    IS D+        E+ +    C RL I H 
Sbjct: 8   VSGGMDSITLLY--------DKKDEIALG-ISFDYG-SNHNAREIPFAQMHCERLGIKHI 57

Query: 86  VVSWKNSKP--QTGLMAAAR---EARYAL------------------ISEHAKTINATLI 122
           V++        ++ L+  A    E  Y                        A++ N   +
Sbjct: 58  VINLDFMHRYFKSSLLDGADAIPEGHYEADNMKSTVVPFRNGIMLSIAIGIAESHNLKKV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD--LNLWISRPFLRCRREDIRSF 180
           + A+   D   T+Y         +   +  +     Y   +N+ +S P+    +  I S 
Sbjct: 118 LIANHGGDH--TIY------PDCRPEFIHAIDKAARYGTFINVGVSAPYTDITKGQIASI 169

Query: 181 LLQRNISWCE 190
             +  I + E
Sbjct: 170 GKRLGIDYRE 179


>gi|205829096|sp|B1XM11|MNMA_SYNP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 353

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 65/201 (32%), Gaps = 53/201 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
             + V +SGG DS      LH          +   +  G+   S   VD           
Sbjct: 2   GKVAVGLSGGVDSSVTAGILHRQGYTVEGVTLWLMKGKGQC-CSEGMVD----------- 49

Query: 71  RYVSDVCSRLRIAHS-----------VVSWKNSKPQTGL----MAAA-REARYALISEHA 114
              +D+C +L I H            +V +  S  + G+     +   R  ++  + + A
Sbjct: 50  --AADICEQLGIPHHIVDSRDLFQKYIVDYVVSGYEVGVTPLPCSQCNRMVKFGPMLQWA 107

Query: 115 K-TINATLIMTAHTF----DDQL---ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           K  +    I T H      +DQ    E   +R+   + ++   L  +   +L        
Sbjct: 108 KAELGIDQIATGHYARIRYNDQTGRYE--LLRAVDRHKDQSYFLYDLTQEMLAGT----L 161

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + + R    +  +S
Sbjct: 162 FPLGEMTKGETRQIAAEMQLS 182


>gi|42518912|ref|NP_964842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii NCC 533]
 gi|73920127|sp|Q74JW9|MNMA_LACJO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|41583198|gb|AAS08808.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii NCC 533]
          Length = 375

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 61/193 (31%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V   + I +  ++++    +             R          E ++    + A  ++
Sbjct: 61  KVADEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      DD      MR +    ++   LS +      D    +  P     +
Sbjct: 121 ADYIAMGHYAATRVDDNGVVHMMRPKDGNKDQTYFLSQLSQ----DQLKKVIFPLANLTK 176

Query: 175 EDIRSFLLQRNIS 187
             +R   +   ++
Sbjct: 177 PQVREIAIASGLA 189


>gi|125973240|ref|YP_001037150.1| tRNA-specific 2-thiouridylase MnmA [Clostridium thermocellum ATCC
           27405]
 gi|256003718|ref|ZP_05428706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum DSM 2360]
 gi|281417440|ref|ZP_06248460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum JW20]
 gi|205813738|sp|A3DDC8|MNMA_CLOTH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|125713465|gb|ABN51957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum ATCC 27405]
 gi|255992279|gb|EEU02373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum DSM 2360]
 gi|281408842|gb|EFB39100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum JW20]
 gi|316940529|gb|ADU74563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium thermocellum DSM 1313]
          Length = 359

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 61/202 (30%), Gaps = 45/202 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     +     ++               +E + V    
Sbjct: 2   SKKKVMVGMSGGVDSSVAAAILLEQGYEVIGATMQIW---------PDTDEETKLVEGGC 52

Query: 74  ---------SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYA 108
                      V ++L I + V+++K+   ++                   A  R  ++ 
Sbjct: 53  CSLSAVDDARSVANKLGIPYYVLNFKDIFEKSVINYFKDEYLKGRTPNPCIACNRFVKFE 112

Query: 109 LISEHAKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            +   A ++    I T H    T+DD  +   ++      +           +  +    
Sbjct: 113 SMLNKALSMGIDYIATGHYAIITYDDNKKRYLLKKSVTQQKDQTYALY---NVTQEQLKH 169

Query: 165 ISRPFLRCRREDIRSFLLQRNI 186
           I  P     +E +R+   +  +
Sbjct: 170 ILMPIGNFTKEQVRAKAKELGL 191


>gi|262306075|gb|ACY45630.1| gln amidotransferase [Hexagenia limbata]
          Length = 197

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    +++  V    +L+ VSGG DS      LH  L +      +  A+ +D+   R+ 
Sbjct: 31  EQCIKYIKETVGSNKVLLLVSGGVDSTVCAALLHKALRED-----QVIAVHIDNGFMRKG 85

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
              E + V     +L +   VV+
Sbjct: 86  ---ESQKVEQSLEKLGLHLKVVN 105


>gi|332025647|gb|EGI65809.1| GMP synthase [Acromyrmex echinatior]
          Length = 716

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R+ V    +L+ VSGG DS      L   LS     K +  A+ +++   R+    E 
Sbjct: 231 YIRNTVGDKKVLLLVSGGVDSTVCAALLQKALS-----KEQVIALHINNGFMRKG---ET 282

Query: 71  RYVSDVCSRLRIAHSVVS 88
           ++V    ++L +   VV+
Sbjct: 283 QFVEQSLAQLCVTLRVVN 300


>gi|262306027|gb|ACY45606.1| gln amidotransferase [Craterostigmus tasmanianus]
          Length = 197

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R +V    +L+ VSGG DS      LH  L      K +  A+ +D+   R++   E 
Sbjct: 36  YIRDIVGDNKVLMLVSGGVDSTVCAALLHKALK-----KDQVIALHIDNGFMRKS---ET 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V +   +L +   +V 
Sbjct: 88  LQVKESLEKLGLKLKIVR 105


>gi|62719475|gb|AAX93338.1| GMP synthetase [Lactobacillus sanfranciscensis]
          Length = 236

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 11/81 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     ++  V    +L+ +SGG DS  + + LH  + D      +  ++ VDH  L
Sbjct: 142 DFIEDAIANIKETVGDKKVLLGLSGGVDSSVVAVLLHRAIGD------QLISVFVDHGLL 195

Query: 63  RETAKDEVRYV-SDVCSRLRI 82
           R+    E + V   +     +
Sbjct: 196 RKN---EAQQVLKALGDDFGL 213


>gi|222529421|ref|YP_002573303.1| GMP synthase [Caldicellulosiruptor bescii DSM 6725]
 gi|259647755|sp|B9MS76|GUAA_ANATD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222456268|gb|ACM60530.1| GMP synthase, large subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 511

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 23/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++ +V    ++ A+SGG DS    + +H  +            I VDH  L
Sbjct: 200 SFIEEKVNEIKDIVGNQKVVCALSGGVDSSVAAVLVHKAIGK------NLYCIFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH 113
           R+   +EV  V     +  +    V  K+           P+       RE       E 
Sbjct: 254 RKGEAEEVVSVFK--DKFDMNVIKVDAKDRFLEALKGVTDPEEKRKIIGREFIRVFEEEA 311

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +   ++    + D +E+   ++    +   +G  G+ + I +     I  P     
Sbjct: 312 EKLGDIKFLVQGTIYPDVVESGVGKAATIKSHHNVG--GLPEKIKFKQ---IIEPLRDLF 366

Query: 174 REDIRSFLLQRNIS 187
           ++++R   ++  I 
Sbjct: 367 KDEVRRVGIELGIP 380


>gi|188534099|ref|YP_001907896.1| tRNA-specific 2-thiouridylase MnmA [Erwinia tasmaniensis Et1/99]
 gi|188029141|emb|CAO97013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia tasmaniensis Et1/99]
          Length = 369

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMK--------NWEEDDGEEYCTAAEDLAD 57

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    V++                +  R               A +   A+
Sbjct: 58  AQAVCDKLGIYLHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAE 117

Query: 116 TINATLIMTAH 126
            + A  I T H
Sbjct: 118 DLGADYIATGH 128


>gi|323694000|ref|ZP_08108184.1| asparagine synthase [Clostridium symbiosum WAL-14673]
 gi|323501936|gb|EGB17814.1| asparagine synthase [Clostridium symbiosum WAL-14673]
          Length = 144

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             + +A SGG DS  LL        +    K    A++ +  L      +      V  
Sbjct: 22 KGPVCIAFSGGVDSSLLLKIACD---NGRKYKTPVYAVTFNTMLHPACDLDTA--KKVAR 76

Query: 79 RLRIAHSVVSWKNSKPQT 96
           L   H V+     + + 
Sbjct: 77 ELGAEHVVIQVDELEMEG 94


>gi|300723601|ref|YP_003712906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630123|emb|CBJ90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 367

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 51/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS----- 74
             ++V +SGG DS      L       +   +K               D   Y S     
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAADDL 56

Query: 75  ----DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    +++              E +                  A +   
Sbjct: 57  ADAQAVCDKLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D    +  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADYIATGHYVRRRDADGISQLLRGLDGNKDQSYFLYTLSHQQIAKS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 173 ELEKPEVRRIAEEIGL 188


>gi|167747226|ref|ZP_02419353.1| hypothetical protein ANACAC_01940 [Anaerostipes caccae DSM 14662]
 gi|167653204|gb|EDR97333.1| hypothetical protein ANACAC_01940 [Anaerostipes caccae DSM 14662]
          Length = 277

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 56/192 (29%), Gaps = 37/192 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+VR FV+       + +A SGG DS  LL  L             F+ ++    L  + 
Sbjct: 13  EAVRGFVKE-----DVALAFSGGVDSSLLLKLLCLAAEKTGKKVAAFTMVT---KLHPS- 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINAT 120
             + +    V       H V+                     +   Y  + + AK +   
Sbjct: 64  -GDAKIAERVAGEAGAVHRVIHVDELSHAGIMDNPENRCYLCKRYLYTELLKSAKALGIQ 122

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIR 178
            ++     DD                   L+     I     L I  P +     + DIR
Sbjct: 123 TVLEGTNADD-------------------LNAYRPGIRAVKELGILSPLVQAGMTKADIR 163

Query: 179 SFLLQRNISWCE 190
               +  IS  E
Sbjct: 164 RMASEYGISVAE 175


>gi|319638175|ref|ZP_07992938.1| GMP synthase [Neisseria mucosa C102]
 gi|317400448|gb|EFV81106.1| GMP synthase [Neisseria mucosa C102]
          Length = 521

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGNDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISE 112
               E + V D     L +   V+     +           P+        E      +E
Sbjct: 258 N---EGKMVMDMFARNLGV--RVIHVDAEEQFLAKLAGVTDPEKKRKIIGAEFIEVFDAE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +  ++ L +  P    
Sbjct: 313 EKKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 370 FKDEVRELGVALGLP 384


>gi|303238932|ref|ZP_07325463.1| Queuosine synthesis-like protein [Acetivibrio cellulolyticus CD2]
 gi|302593565|gb|EFL63282.1| Queuosine synthesis-like protein [Acetivibrio cellulolyticus CD2]
          Length = 267

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 50/249 (20%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
            +E ++  + SL      +VA SGG DS  LL     VL +         A++       
Sbjct: 6   KLEKLKKHIESLGSA---VVAFSGGVDSSFLLKVAFDVLGN------NVLAVT------A 50

Query: 65  TAK----DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHA 114
            +      E     +  ++  I H  ++ +       ++  T      +   ++ I++ A
Sbjct: 51  KSATFPEREYNEAVEFINKYGIRHLTIASEELELEGFAQNSTNRCYICKHELFSKINDIA 110

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRC 172
           K  N   +      DD                   LS     +     L +  P      
Sbjct: 111 KKENLKYVFEGSNHDD-------------------LSDFRPGLKAVEELLVVSPLREAEL 151

Query: 173 RREDIRSFLLQRNISWCEDPS--NTDDR--FERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            ++DIR    +  +S  + PS      R  + +   R  ++ +D    +L    F+ +RV
Sbjct: 152 TKDDIRFLSKEMGLSTWDKPSFACLSSRFPYGQTITREKLQMVDKAEQFLIDLGFRQVRV 211

Query: 229 KVNNAVAML 237
           + +  +A +
Sbjct: 212 RHHGELARI 220


>gi|311114462|ref|YP_003985683.1| GMP synthase (glutamine-hydrolyzing) [Gardnerella vaginalis ATCC
           14019]
 gi|310945956|gb|ADP38660.1| GMP synthase (glutamine-hydrolyzing) [Gardnerella vaginalis ATCC
           14019]
          Length = 520

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IRAEVGDAQVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNS--KPQTGLMAAAR--------------EARYALISEHA 114
            V  D      I    V  ++       G+    R              +A+  +I E  
Sbjct: 260 QVKHDFVEATGIKLIAVDAEDDFLDALKGVSEPERKRKIIGEKFIRTFEKAQRQVIEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           K+      +   T   D +E+             +        +  DL   +  P     
Sbjct: 320 KSGAEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDLKFKLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|206889695|ref|YP_002248055.1| GMP synthase (glutamine-hydrolyzing) [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741633|gb|ACI20690.1| GMP synthase (glutamine-hydrolyzing) [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 510

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 24/197 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             S +E     +R  V    ++ A+SGG DS    + +H  + D        + I VD+ 
Sbjct: 196 MHSFVERETEEIRKKVGKYKVVCALSGGVDSTVTAVLVHKAIGD------ALTCIFVDNG 249

Query: 62  -LRETAKDEVRYVSDVCS-RLRIAHSVV--SWKNSKPQTGLMAAAREAR------YALIS 111
            LR     E   V ++      I   VV  S +  K   G+    R+ +        +  
Sbjct: 250 LLRAG---EREKVEEMLRNNFHINLKVVDASERFLKRLKGVHDPERKRKIIGGEFIKIFE 306

Query: 112 EHAKTI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           E AK I     +     + D +E++  +      +    + G+    L  + L +  P  
Sbjct: 307 EEAKKIEGVKFLAQGTLYPDVIESISFKGPSATIKSHHNVGGL----LKRMKLKLIEPLR 362

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  I 
Sbjct: 363 ELFKDEVRELGKELGIP 379


>gi|315231792|ref|YP_004072228.1| GMP synthase (glutamine-hydrolyzing) [Thermococcus barophilus MP]
 gi|315184820|gb|ADT85005.1| GMP synthase (glutamine-hydrolyzing) [Thermococcus barophilus MP]
          Length = 307

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 31/198 (15%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M+ S IE     +R  V     ++A+SGG DS    I  H  + D      K  A+ V+ 
Sbjct: 1   MWESFIEEKVKEIREKVGDGKAIIALSGGVDSSTAAILAHKAIGD------KLYAVFVNT 54

Query: 61  C-LRETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREARY-------AL 109
             LR+    E  +V         L + +     +      G++    + R         +
Sbjct: 55  GFLRKG---EPEFVIKTFRDEFGLNLIYVDAQERFFNALKGIVDP-EQKRKIIGKVFIDV 110

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E AK I+A  ++      D +E       +   +    + G+ + +    NL +  P 
Sbjct: 111 FEEVAKEIDAEFLIQGTIAPDWIE------SKGKIKSHHNVGGLPERL----NLKLIEPL 160

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 161 RDLYKDEVREVAKELGLP 178


>gi|302882329|ref|XP_003040075.1| hypothetical protein NECHADRAFT_64031 [Nectria haematococca mpVI
           77-13-4]
 gi|256720942|gb|EEU34362.1| hypothetical protein NECHADRAFT_64031 [Nectria haematococca mpVI
           77-13-4]
          Length = 542

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 68/196 (34%), Gaps = 31/196 (15%)

Query: 13  VRSLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHCLRETAKDEV 70
           +R LV P  +++  VSGG DS      +   + DR      F AI V + C+R    +EV
Sbjct: 224 IRELVGPKALVIGGVSGGVDSTVGATLMREAIGDR------FHAIGVNNGCMRLNEFEEV 277

Query: 71  RYVSDVCSRLRIAHSVVS-----------WKNSKPQTGL---------MAAAREARYALI 110
           +   ++   L I   VV              + + +  +            A        
Sbjct: 278 K--KNLRDHLGINLHVVEAGELFLGRLAGVTDPEKKRKIIGSTFIDVFEQEAIRIEKEA- 334

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                +      +    + D +E++  R      +    + G+ + ++    L +  P  
Sbjct: 335 ENTPNSGRVEWFLQGTLYPDVIESLSWRGPSATIKTHHNVGGLPERMMKGQGLRLIEPLR 394

Query: 171 RCRREDIRSFLLQRNI 186
              ++++R+   Q  I
Sbjct: 395 LLFKDEVRAIGRQLGI 410


>gi|297582999|ref|YP_003698779.1| GMP synthase large subunit [Bacillus selenitireducens MLS10]
 gi|297141456|gb|ADH98213.1| GMP synthase, large subunit [Bacillus selenitireducens MLS10]
          Length = 512

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 30/188 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  +   +H  + D      +   + +DH  LR+    E +
Sbjct: 211 IRENVGDRKVLCALSGGVDSSVVAALVHKAIGD------QLICMFIDHGLLRKN---EAK 261

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
            V            +V+     +   G +A              E  Y    E AK  + 
Sbjct: 262 SVMETFAE--GFDMNVIKIDAQERFLGKLAGVSDPEQKRKIIGNEFIYIFEEEAAKLEDV 319

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +  D+   +  P     ++++R+
Sbjct: 320 DFLAQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDMKFDLIEPLNTLFKDEVRA 373

Query: 180 FLLQRNIS 187
              +  +S
Sbjct: 374 VGSELGLS 381


>gi|118465034|ref|YP_883483.1| GMP synthase [Mycobacterium avium 104]
 gi|118166321|gb|ABK67218.1| glutamine-hydrolyzing GMP synthase [Mycobacterium avium 104]
          Length = 509

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   + +V+
Sbjct: 203 VRAQIGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGERAQVQ 256

Query: 72  --YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTIN---ATL 121
             +V+   + L  +  +    +     T          R+   A        +       
Sbjct: 257 RDFVAATGANLVTVDAADTFLQALAGVTNPEGKRKIIGRQFIRAFEGAVRDVLGDKPVEF 316

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+      R      +        +  DL   +  P     ++++R+  
Sbjct: 317 LVQGTLYPDVVES-----GRGSGTANIKSHHNVGGLPGDLKFTLVEPLRLLFKDEVRAVG 371

Query: 182 LQRNIS 187
            +  + 
Sbjct: 372 RELGLP 377


>gi|238794821|ref|ZP_04638422.1| GMP synthase [glutamine-hydrolyzing] [Yersinia intermedia ATCC
           29909]
 gi|238725834|gb|EEQ17387.1| GMP synthase [glutamine-hydrolyzing] [Yersinia intermedia ATCC
           29909]
          Length = 525

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  +   H+++ +SGG DS    + LH  + +R       + + VD+  L
Sbjct: 212 KIIEDAIVRLREQIGEDHVILGLSGGVDSSVTAMLLHRAIGNR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLAALAGVDEPEAKRKIIGRVFVELFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQDQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|330444576|ref|YP_004377562.1| GMP synthase [Chlamydophila pecorum E58]
 gi|328807686|gb|AEB41859.1| GMP synthase [Chlamydophila pecorum E58]
          Length = 513

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 68/188 (36%), Gaps = 22/188 (11%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAK 67
           +R     +     +L+ +SGG DS      LH  L +R         + VD   LRE   
Sbjct: 208 IRDIQEKVEENERVLLGLSGGVDSTITAALLHKALGER------VICVLVDTGFLREN-- 259

Query: 68  DEVRYVSDVCSRLR----IAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTINA 119
            EV  ++  C+ L+    I ++   + +           R+        +    AK ++ 
Sbjct: 260 -EVEEIASQCAFLKENLLIENASELFYSKLKGIHDPEEKRKLLGQTFIEVFESIAKNLDI 318

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    +    + + +        +   L+L +  P     ++++R+
Sbjct: 319 HWLAQGTIYSDVIES----AHSGNSSQVIKSHHNVGGLPEHLHLKLLEPLRYLFKDEVRT 374

Query: 180 FLLQRNIS 187
                ++S
Sbjct: 375 LGRSLSLS 382


>gi|315605031|ref|ZP_07880085.1| GMP synthase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313310|gb|EFU61373.1| GMP synthase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 526

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 35/195 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++ A+SGG DS      +H  + D      + +   +DH  LR   +++V 
Sbjct: 215 IREQVGDAQVICALSGGVDSSVAAALVHRAVGD------QLTCFFIDHGLLRAGEREQVE 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------ARE-------ARYALISEH 113
              D    + I   V++   S+     +A             RE       A+  +I E 
Sbjct: 269 --GDYARGMGI--RVITCDESERFLSALAGVTEPEAKRKIIGREFIRSFEAAQKQVIEEV 324

Query: 114 AKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                    +   T   D +E+             +        +  D+   +  P    
Sbjct: 325 GAAGGEVKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDMTFELVEPLRTL 379

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  + 
Sbjct: 380 FKDEVRAVGRELGLP 394


>gi|294140155|ref|YP_003556133.1| GMP synthase [Shewanella violacea DSS12]
 gi|293326624|dbj|BAJ01355.1| GMP synthase [Shewanella violacea DSS12]
          Length = 525

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    ++  +    +++ +SGG DS  + + LH  + D      K + + VD+  L
Sbjct: 212 SIIENAIASLKQQIGDDEVILGLSGGVDSSVVAMLLHRAIGD------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V D       +    V+ +N         A  EA+  +I           
Sbjct: 266 RLN---EAEQVMDMFGDHFGLKIIHVNAENRFLDAMKGEAEPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +  D++L +  P    
Sbjct: 323 SKKCANAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMDLGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|288560676|ref|YP_003424162.1| GMP synthase subunit B GuaAb [Methanobrevibacter ruminantium M1]
 gi|288543386|gb|ADC47270.1| GMP synthase subunit B GuaAb [Methanobrevibacter ruminantium M1]
          Length = 308

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 31/197 (15%)

Query: 2   FLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
            L P E +   +   +  +     ++A+SGG DS        SVL+  + G    +A+ V
Sbjct: 1   MLEPKEFISDAIAKIKEEIGDEKTIIALSGGVDSSV-----CSVLTQEAIGD-NLTAVFV 54

Query: 59  DHC-LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALI 110
           +H  LRE   ++V  V +   RL   +   S +      G+     E R         + 
Sbjct: 55  NHGLLREGEAEQVCSVFE--ERLNFKYIDASDEFLSELAGVEDP-EEKRKIIGRVFIEVF 111

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              A+ ++A  ++      D +ET           +G   +     +   + L +  P  
Sbjct: 112 EREAQAVDAKYLVQGTIAPDWIET-----------EGEIKTHHNMALPSGMVLKVVEPVR 160

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  + 
Sbjct: 161 DLYKDEVRLVGTELGLP 177


>gi|23465533|ref|NP_696136.1| GMP synthase [Bifidobacterium longum NCC2705]
 gi|44887966|sp|Q8G5P4|GUAA_BIFLO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|23326195|gb|AAN24772.1| GMP synthase glutamine amidotransferase [Bifidobacterium longum
           NCC2705]
          Length = 535

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 224 IREQVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 274

Query: 72  YVS-DVCSRLRIAHSVVSWKNS--KPQTGLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +       G+    R              +A+  ++ E  
Sbjct: 275 QVKHDFVAATGIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 334

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 335 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDIKFQLIEPLRTLF 389

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 390 KDEVRAIGTELGLP 403


>gi|89100972|ref|ZP_01173817.1| TrmU [Bacillus sp. NRRL B-14911]
 gi|89084308|gb|EAR63464.1| TrmU [Bacillus sp. NRRL B-14911]
          Length = 370

 Score = 49.9 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 42/199 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YEDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A ++ A  + T H    ++E        +R   +  ++   L+ + +  L      +  P
Sbjct: 117 AMSLGADYLATGHYA--RVEHGENGVKMLRGLDENKDQTYFLNQLTEEQLSK----VMFP 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R    +  ++
Sbjct: 171 IGSIEKSEVREIAKKAGLA 189


>gi|302519571|ref|ZP_07271913.1| GMP synthase domain-containing protein [Streptomyces sp. SPB78]
 gi|302428466|gb|EFL00282.1| GMP synthase domain-containing protein [Streptomyces sp. SPB78]
          Length = 527

 Score = 49.9 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 21/188 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V     +  +SGG DS     A+ + L  R+ G  + + + VDH L R+   ++V 
Sbjct: 216 IRARVGTKRAICGLSGGVDS-----AVAAALVQRAIGS-QLTCVYVDHGLMRKGETEQVE 269

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +V+    +L++  +   + ++          R+          +   A ++  A    
Sbjct: 270 KDFVAATGVQLKVVDAADRFLDALAGVSDPEQKRKIIGREFIRVFEQAQAEIV--AENAA 327

Query: 130 DQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           D  +       T+Y          G            +  DL   +  P  +  ++++R+
Sbjct: 328 DGADVAFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFELIEPLRKLFKDEVRA 387

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 388 VGQELGLP 395


>gi|317131257|ref|YP_004090571.1| asparagine synthase [Ethanoligenens harbinense YUAN-3]
 gi|315469236|gb|ADU25840.1| asparagine synthase [Ethanoligenens harbinense YUAN-3]
          Length = 272

 Score = 49.9 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 73/245 (29%), Gaps = 42/245 (17%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           +     +R L     + VA SGG DS  LL +    L       +   + +         
Sbjct: 7   QKREILLRYLQGLGSVAVAFSGGVDSSFLLRSACDALGVSHVLAVTARSAT-------YP 59

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINAT 120
           + E+R    +     + H V+  +           T      +   +  I   A      
Sbjct: 60  ERELREAVALAKAFGVQHEVIRSEELDVAGFENNPTDRCYLCKNELFHKIRAVADRHGVA 119

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            I      DD                G    GM       ++  +     +  + +IR+ 
Sbjct: 120 EIAEGSNLDD---------------IGDFRPGMKAVAEQGIHSPLR--AAKLAKAEIRAL 162

Query: 181 LLQRNISWCEDPS--------NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNN 232
             +  +   + PS           ++  R ++R     ID     L    F+ +RV+ + 
Sbjct: 163 SRELGLPTWDKPSFACLSSRIPYGEKITREKLR----AIDEAEQLLLDMGFRQVRVRHHG 218

Query: 233 AVAML 237
            +A +
Sbjct: 219 DIARI 223


>gi|284007318|emb|CBA72670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arsenophonus nasoniae]
          Length = 364

 Score = 49.9 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 47/198 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD---- 75
             ++V +SGG DS      L       +   +K               D   Y +     
Sbjct: 2   KKVIVGMSGGVDSSVSAYLLKQQGYQVAGLFMKNW----------EEDDNEEYCAAATDL 51

Query: 76  -----VCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR--------------YALISEH 113
                VC +L I    V++            +A  +  R               A +   
Sbjct: 52  ADAQSVCDKLDIELHTVNFAAEYWDNVFAHFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 111

Query: 114 AKTINATLIMTAHTFDDQLETV-----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H    + +TV      +R   +  ++   L  +    L         P
Sbjct: 112 AEDLAADYIATGHYA--RCKTVNGRHQLLRGLDNNKDQSYFLYTLDQAQLAQS----LFP 165

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R    +  +
Sbjct: 166 IGELEKSTVRRIAEEIGL 183


>gi|171057122|ref|YP_001789471.1| tRNA-specific 2-thiouridylase MnmA [Leptothrix cholodnii SP-6]
 gi|205816874|sp|B1XX60|MNMA_LEPCP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170774567|gb|ACB32706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptothrix cholodnii SP-6]
          Length = 380

 Score = 49.9 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 55/211 (26%), Gaps = 60/211 (28%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV- 73
            L     I+V +SGG DS      L     +     +K               D+  +  
Sbjct: 4   QLPPKQRIVVGLSGGVDSAVSAWLLKQQGHEVVAIFMKNW----------EDDDDSEFCS 53

Query: 74  --------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYAL 109
                   + V   L I    V++             R                E ++  
Sbjct: 54  SRQDFLDAASVADVLGIEIEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKA 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISR 167
             +HA  + A  I T H              R       GL  +   +  L D + ++ R
Sbjct: 114 FLDHAMRLGADRIATGHYA------------RVRHNPATGLHELLKGLDPLKDQSYFLHR 161

Query: 168 -----------PFLRCRREDIRSFLLQRNIS 187
                      P     + ++R   L+  + 
Sbjct: 162 LNQAQLASTLFPVGELPKTEVRRIALEIGLP 192


>gi|87125503|ref|ZP_01081348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9917]
 gi|86166803|gb|EAQ68065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. RS9917]
          Length = 583

 Score = 49.9 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 33/198 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDE 69
           +R       + V +SGG DS      L           +             L + A   
Sbjct: 205 LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMSGKGACCAEGLVDAAG-- 262

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAA------AREARYALISEHAK- 115
                 +C +L I H VV ++    +        G          +R  R        + 
Sbjct: 263 ------ICDQLGIPHHVVDFRAHFKEQIVDFLVQGYGEGITPLPCSRCNREVKFGPMLQW 316

Query: 116 ---TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
                    I T H        Q +    +  R           + D +  +    +  P
Sbjct: 317 ALDERGIERIATGHYARIRHGAQSDNGCHQLLRGCDSHKDQSYFLYD-LPQEALGRLVFP 375

Query: 169 FLRCRREDIRSFLLQRNI 186
                + D R    +  +
Sbjct: 376 LGELTKSDTRLEAARHGL 393


>gi|300703331|ref|YP_003744933.1| ATP-sulfurylase subunit 2 [Ralstonia solanacearum CFBP2957]
 gi|299070994|emb|CBJ42303.1| ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase)
           [Ralstonia solanacearum CFBP2957]
          Length = 316

 Score = 49.9 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H  +E      + V+++ +RL +
Sbjct: 45  FSGGKDSIVMLHLALKAFRLGDRKIELPFPLVHIDTGHNYQEVIAFRDQRVAELGARLVV 104

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  ++     +M     D
Sbjct: 105 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIESHGFDALMGGARRD 152


>gi|311744725|ref|ZP_07718522.1| GMP synthase [Aeromicrobium marinum DSM 15272]
 gi|311312034|gb|EFQ81954.1| GMP synthase [Aeromicrobium marinum DSM 15272]
          Length = 531

 Score = 49.9 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E     +R  V  + ++ A+SGG DS     A+ + L  R+ G  + +A+ VDH  L
Sbjct: 214 NIVEEQIALIREQVGDSRVISALSGGVDS-----AVSTALVQRAIGD-RLTAVFVDHGLL 267

Query: 63  RETAKDEVRYVS-DVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISE 112
           RE    E   V  D  +   +   VV  +            P+T      RE        
Sbjct: 268 REG---EAEQVELDYVAATGVDLKVVDAREQFLGHLAGVTDPETKRKIIGRE-----FIR 319

Query: 113 HAKTINATLIMT----------AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
             +   A ++ T             + D +E+             +        +  DL 
Sbjct: 320 VFEAAEAEVLATPGPPVKFLVQGTLYPDVVES-----GGGEGAATIKSHHNVGGLPEDLE 374

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P     ++++R    Q  I 
Sbjct: 375 FSLIEPLRALFKDEVREVGRQLGIP 399


>gi|78780048|ref|YP_398160.1| hypothetical protein PMT9312_1663 [Prochlorococcus marinus str. MIT
           9312]
 gi|78713547|gb|ABB50724.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 274

 Score = 49.9 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 61/191 (31%), Gaps = 38/191 (19%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++R ++++L     + +A SGG DS  +       L  ++      S    +  LRE A+
Sbjct: 18  TIRRYIKNL---DSVCIAYSGGVDSTLVASLAFEQLGSKAIAITGISPALAN-TLREDAR 73

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAKTINATL 121
            + +++        + H  +     +  +          A ++  +   +  +K  N  +
Sbjct: 74  SQAKWI-------GVKHLEIQTSELEQSSYSENPKDRCFACKKELHKHTTYLSKKFNYKI 126

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRS 179
           ++     DD                   L      I       +  P    +  ++DIR 
Sbjct: 127 VLDGVNLDD-------------------LKDHRPGIQAAKKAGVISPLAKFKFSKQDIRD 167

Query: 180 FLLQRNISWCE 190
                   W +
Sbjct: 168 ISRALGFPWWD 178


>gi|224373011|ref|YP_002607383.1| GMP synthase [Nautilia profundicola AmH]
 gi|223588494|gb|ACM92230.1| GMP synthase (glutamine-hydrolyzing) [Nautilia profundicola AmH]
          Length = 511

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS      LH  + D+         I VD   LR+  +++V 
Sbjct: 208 IREQVGDNKVICALSGGVDSSVTAALLHEAIGDK------LVPIFVDTGLLRKNEREQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTI-NATLI 122
           +     + L +    V  +       K         +   +       E AK   +A  +
Sbjct: 262 HAFK--NVLHVPLITVDAREKFLSKLKGVVDPEEKRKIIGHTFIEVFDEEAKKHKDAKFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ D + ++    +  P     ++++R   +
Sbjct: 320 AQGTLYPDVIESVSVKGPSKTIKSHHNVGGLPDWMQFE----LIEPLRELFKDEVRKLGI 375

Query: 183 QRNIS 187
           +  + 
Sbjct: 376 ELGLP 380


>gi|171743082|ref|ZP_02918889.1| hypothetical protein BIFDEN_02208 [Bifidobacterium dentium ATCC
           27678]
 gi|283455908|ref|YP_003360472.1| GMP synthase glutamine amidotransferase [Bifidobacterium dentium
           Bd1]
 gi|171278696|gb|EDT46357.1| hypothetical protein BIFDEN_02208 [Bifidobacterium dentium ATCC
           27678]
 gi|283102542|gb|ADB09648.1| GMP synthase glutamine amidotransferase [Bifidobacterium dentium
           Bd1]
          Length = 520

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+   ++VR
Sbjct: 209 IRDKVGDAQVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKGEAEQVR 262

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAK 115
           +  D      I    V     +  +          R            +A+  +I E   
Sbjct: 263 H--DFVEATGIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGA 320

Query: 116 TINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      +   T   D +E+             +        +  D+   +  P     +
Sbjct: 321 SGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPDDIKFQLVEPLRTLFK 375

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 376 DEVRAIGTELGLP 388


>gi|311896498|dbj|BAJ28906.1| putative GMP synthase [Kitasatospora setae KM-6054]
          Length = 528

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 30/200 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E     +R  V     +  +SGG DS     A+ + L  R+ G  + + + VDH L 
Sbjct: 211 NVVEEQVALIREQVGDKRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVYVDHGLM 264

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTIN 118
           R+   ++V    D  +   +   VV     +  +          R+          +   
Sbjct: 265 RKGETEQVE--KDFVAATGVKLVVVDAEERFLTALKGVSDPEQKRKIIGREFIRVFEQAQ 322

Query: 119 ATLIMTAHTFDDQ---LE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISR 167
           A +I       D+   +E     T+Y          G            +  DL   +  
Sbjct: 323 ADIIA------DEGPAVEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFQLVE 376

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P  +  ++++R    +  + 
Sbjct: 377 PLRKLFKDEVRMVGQELGLP 396


>gi|289208445|ref|YP_003460511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. K90mix]
 gi|288944076|gb|ADC71775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. K90mix]
          Length = 373

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 52/205 (25%), Gaps = 58/205 (28%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
           P  ++V +SGG DS      L           +K               D+  Y      
Sbjct: 4   PERVIVGLSGGVDSAVAASRLLEAGYRVEGLFMKNW----------EDDDDAEYCAAEAD 53

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGL-------MAAA---------REARYALISEH 113
                +V + L I     ++     Q           A           RE ++    +H
Sbjct: 54  FEMAREVAACLEIPLHKANFAEDYRQRVFRHFLHEYEAGRTPNPDILCNREIKFRSFLDH 113

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-------- 165
           A+ + A  I T H              R     G     M      D   ++        
Sbjct: 114 ARQLGAQWIATGHYA------------RVRHLPGHSELCMAADANKDQTYFLHTLTQEQL 161

Query: 166 ---SRPFLRCRREDIRSFLLQRNIS 187
                P     ++ +R+   +  + 
Sbjct: 162 RPALFPLGDIPKDQVRARARELGLP 186


>gi|198275231|ref|ZP_03207762.1| hypothetical protein BACPLE_01390 [Bacteroides plebeius DSM 17135]
 gi|198271814|gb|EDY96084.1| hypothetical protein BACPLE_01390 [Bacteroides plebeius DSM 17135]
          Length = 517

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 27/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIETTVAELKQQLGDDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAK 115
           R+     V +  D  C  L +     S K      G+    R+ +        +  E A 
Sbjct: 252 RKNEFKNVLH--DYECLGLNVIGVDASEKFFSELAGVTEPERKRKIIGKGFIDVFDEEAH 309

Query: 116 TI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRC 172
            I +   +     + D +E++        +  G  +        +   +NL +  P    
Sbjct: 310 KIQDVKWLAQGTIYPDCIESL--------SITGTVIKSHHNVGGLPEKMNLKLCEPLRLL 361

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 362 FKDEVRRVGRELGMP 376


>gi|154509654|ref|ZP_02045296.1| hypothetical protein ACTODO_02187 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799288|gb|EDN81708.1| hypothetical protein ACTODO_02187 [Actinomyces odontolyticus ATCC
           17982]
          Length = 518

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 35/195 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++ A+SGG DS      +H  + D      + +   +DH  LR   +++V 
Sbjct: 207 IREQVGDAQVICALSGGVDSSVAAALVHKAVGD------QLTCFFIDHGLLRAGEREQVE 260

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------ARE-------ARYALISEH 113
              D    + I   V++   S+     +A             RE       A+  +I E 
Sbjct: 261 N--DYARGMGI--RVITCDESERFLSALAGVTEPEAKRKIIGREFIRSFEAAQKQVIEEV 316

Query: 114 AKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                    +   T   D +E+             +        +  D+   +  P    
Sbjct: 317 GAAGGEVKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDMTFELVEPLRTL 371

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  + 
Sbjct: 372 FKDEVRAVGRELGLP 386


>gi|167469978|ref|ZP_02334682.1| GMP synthase [Yersinia pestis FV-1]
          Length = 353

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 40  TIIEDAIVRLREQIGDDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 93

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 94  RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLSALTGVDEPEAKRKIIGRVFVELFDEE 150

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 151 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 207

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 208 FKDEVRKIGLELGLPY 223


>gi|75907277|ref|YP_321573.1| GMP synthase [Anabaena variabilis ATCC 29413]
 gi|91206794|sp|Q3MEA8|GUAA_ANAVT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|75701002|gb|ABA20678.1| GMP synthase (glutamine-hydrolyzing) [Anabaena variabilis ATCC
           29413]
          Length = 540

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 22/194 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++R  VR+ V    +L+A+SGG DS  L   +H  + D      + + + +D    R+ 
Sbjct: 225 EAIRE-VRAKVGDKRVLLALSGGVDSSTLAFLMHKAIGD------QLTCVFIDQGFMRKY 277

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYAL---ISEHAKTI 117
             +  R V     +  I    V+ ++         T      R   +       E ++ +
Sbjct: 278 --EPERLVKLFQEQFHIPVEYVNARDRFLDIMVGVTDPEEKRRRIGHEFIQVFEETSRNL 335

Query: 118 N-ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFLRCR 173
                +     + D +E+          E+             +  DL   +  P  +  
Sbjct: 336 GPFDYLAQGTLYPDVIESADTNVDPQTGERVAVKIKSHHNVGGLPKDLRFKLVEPLRKLF 395

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 396 KDEVRKVGRSVGLP 409


>gi|332882932|ref|ZP_08450539.1| GMP synthase domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332679140|gb|EGJ52130.1| GMP synthase domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 507

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 73/193 (37%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFVDTTVAELKAQLGDDRVILGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
           R+     V +  D  C  L +     S K        + P+       R+      +E  
Sbjct: 252 RKNEFKNVLH--DYECLGLNVIGVDASAKFFKDLEGVTDPEQKRKIIGRDFVEVFDAEAR 309

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  +A  +     + D++E+  +       +    + G+ +    +++L +  P     +
Sbjct: 310 KITDAKWLAQGTIYPDRIES--LNITGKTIKSHHNVGGLPE----EMHLQLCEPLKWLFK 363

Query: 175 EDIRSFLLQRNIS 187
           +++R    Q  + 
Sbjct: 364 DEVRRVGRQMGMP 376


>gi|325473540|gb|EGC76733.1| tRNA-specific 2-thiouridylase mnmA [Treponema denticola F0402]
          Length = 383

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 45/227 (19%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLR 63
           R   + ++    +LV +SGG DS      L     D      +   K+          + 
Sbjct: 8   RRNFKRILNLMKVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLS--------GIY 59

Query: 64  ETAKDEVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMA--AAR----------EARY 107
           +   D++     V ++L I H V     ++K       +      R          + ++
Sbjct: 60  KEQTDDIEDAKKVAAKLGIKHIVYDMRETFKAEIIDYFVEEYKQGRTPNPCFICNSKIKF 119

Query: 108 ALISEHAKTINATLIMTAHTFD------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
            L  E A       I T H         +  E   +R   D  +       +        
Sbjct: 120 GLFLEQALKDGFDKIATGHYAKIEKTEIEGEERFLLRQAEDVQKDQSYFLALLTQEQLSH 179

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI--SWCEDPSNT----DDRFERV 202
           +++   P     ++ +RS      +  +   D  +     DD + RV
Sbjct: 180 SIF---PLGDFTKKKVRSIAEDAGLINAHRPDSQDICFVPDDDYTRV 223


>gi|306819683|ref|ZP_07453344.1| GMP synthase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304552249|gb|EFM40179.1| GMP synthase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 509

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           VR  V    +L+A+SGG DS  +   +   +          + I VDH L R+   DEV 
Sbjct: 208 VRQRVGDKKVLLALSGGVDSSVVAAVISKAI------GSNLTCIFVDHGLMRKNEGDEVE 261

Query: 72  YV 73
             
Sbjct: 262 AA 263


>gi|262306043|gb|ACY45614.1| gln amidotransferase [Endeis laevis]
          Length = 189

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++  V  + +L+ VSGG DS      LH  L        +  A+ +D+   R   KDE 
Sbjct: 31  YIQDTVGQSKVLMFVSGGVDSTVCAALLHKALKPN-----QVIAVHIDNGFMR---KDES 82

Query: 71  RYVSDVCSRLRIAHSVVS 88
           ++V +  ++L +   VV 
Sbjct: 83  KHVEESLNKLGLHPIVVR 100


>gi|261339434|ref|ZP_05967292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cancerogenus ATCC 35316]
 gi|288318240|gb|EFC57178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 370

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R      ++
Sbjct: 173 ELEKPEVRKIAEALDL 188


>gi|71908904|ref|YP_286491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dechloromonas aromatica RCB]
 gi|123626679|sp|Q47AW0|MNMA_DECAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71848525|gb|AAZ48021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dechloromonas aromatica RCB]
          Length = 365

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 60/208 (28%), Gaps = 48/208 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS--- 74
               ++V +SGG DS    + L     +     +K               D   Y S   
Sbjct: 2   SKKTVVVGLSGGVDSSVAALLLKQQGWNVIGLFMKNW----------EDDDTEEYCSSRQ 51

Query: 75  ------DVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
                  V  ++ I   VV++     +           A R          E ++    +
Sbjct: 52  DLIDVMSVADKIGIDVEVVNFAAEYRERVFAEFLSEYQAGRTPNPDILCNSEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           HA  + A  I T H       D + +   ++++    ++   L  +    L         
Sbjct: 112 HAMQLGAEKIATGHYAGVREFDGKFQ--LLKAEDGTKDQSYFLYRLNQAQLSKT----LF 165

Query: 168 PFLRCRREDIRSFLLQRNISWC--EDPS 193
           P     + D+R       +     +D +
Sbjct: 166 PLADIYKRDVRKIAEAEGLHVAAKKDST 193


>gi|148378111|ref|YP_001252652.1| hypothetical protein CBO0104 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931931|ref|YP_001382511.1| hypothetical protein CLB_0140 [Clostridium botulinum A str. ATCC
           19397]
 gi|153934535|ref|YP_001386063.1| hypothetical protein CLC_0152 [Clostridium botulinum A str. Hall]
 gi|148287595|emb|CAL81660.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927975|gb|ABS33475.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930449|gb|ABS35948.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A
           str. Hall]
          Length = 268

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 14/114 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           + VA SGG DS    + L S         I  + +               R   ++  ++
Sbjct: 20  VAVAFSGGVDST---LLLKSAKEALGDNAISITIV------SPYIPKWEIREARELVDKI 70

Query: 81  RIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDD 130
            I    V     +  ++         + ++ ++    A+      I+     DD
Sbjct: 71  GIKSYFVEVPMLEEIRSNPEDRCYICKKSVFNKIKDLAREKGIKYIVDGTNADD 124


>gi|32473865|ref|NP_866859.1| ATP-utilizing enzyme [Rhodopirellula baltica SH 1]
 gi|32444401|emb|CAD74400.1| conserved hypothetical protein-putative ATP-utilizing enzyme
           [Rhodopirellula baltica SH 1]
          Length = 316

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 19/137 (13%)

Query: 2   FLSPIESVR-FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           F++ ++ +    +  L     ++VA SGG DS  +  A H    D         A++   
Sbjct: 10  FMTDVQQLADQLIAHLKEMGGLVVAFSGGVDSSVVAAAAHRTGRD-------VVAVT--- 59

Query: 61  CLRETAKDEV-RYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEH 113
                       +   V  ++ I H  VS   S      +  +      ++  Y  ++  
Sbjct: 60  AQSPAVARWQLDWARRVAEQVGITHQFVSTDESDRSSYRRNHSDRCFYCKQTLYEFLTPI 119

Query: 114 AKTINATLIMTAHTFDD 130
           A+   AT I++    DD
Sbjct: 120 AEQRGAT-IVSGTNADD 135


>gi|146296722|ref|YP_001180493.1| PP family ATPase [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410298|gb|ABP67302.1| ATP-utilizing enzymes of the PP-loop superfamily-like protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 270

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 74/274 (27%), Gaps = 49/274 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E ++  ++S      +LVA SGG DS  LL     VL +        SA      L 
Sbjct: 9   EKLEKLKDLLQSY---KSVLVAFSGGVDSTFLLKVCRDVLGENCVAVFSSSA------LS 59

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKTI 117
              K E +    +   +     V+       +  L        Y        + E  + +
Sbjct: 60  P--KREKQEAEKLAGSIGAKLIVLERDIFDNEDFLKNDMFRCYYCKKDLIKKLKELKEDL 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRRE 175
               I+     DD                   L              I  P L     ++
Sbjct: 118 KINQIVEGSNIDD-------------------LKDFRPGRKALEEENIKSPLLEVGFTKD 158

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
           +IR    +  +   + PS              +     +   + ++K + +       + 
Sbjct: 159 EIRFLSKEFGLPTFDKPSMA-----------CLVTRIPYGSQVTLQKLEMIEKAEEVLLE 207

Query: 236 MLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLR 269
               +    H   I  I  D   +       L++
Sbjct: 208 KGFKQVRVRHHDDIARIEVDFEELPRFFDLELIK 241


>gi|331091036|ref|ZP_08339878.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405258|gb|EGG84794.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 360

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 46/201 (22%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDHCLRET-------- 65
              ++V +SGG DS      L     D         + +  AI      +E         
Sbjct: 3   KKKVVVGMSGGVDSSVAAHLLKEQGYDVIGVTMQIWQDEDRAI------QEENGGCCGLS 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YAL 109
           A D+ R V     +L I + V+++K    +  +       R+ R             +  
Sbjct: 57  AVDDARRV---AGQLEIPYYVMNFKKEFKKEVIDYFIEEYRQGRTPNPCIACNRYVKWES 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WI 165
           + + +  I A  I T H        V + + R   ++   L+      LY+L        
Sbjct: 114 LLKRSMDIGADYIATGH----YARIVKLENGRYTLKRSATLAKDQTYALYNLTQNQLSHT 169

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P     +++IR    + ++
Sbjct: 170 LMPVGEYTKDEIRQIAEKIHL 190


>gi|325298570|ref|YP_004258487.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
 gi|324318123|gb|ADY36014.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
          Length = 532

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 27/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 223 SFIETTVAHLKEQLGNDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 276

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAK 115
           R+     V +  D  C  L +     S K      G+    R+ +        +  E A 
Sbjct: 277 RKNEFRNVLH--DYECLGLNVIGVDASEKFFTELAGVTEPERKRKIIGKGFIDVFDEEAH 334

Query: 116 TIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRC 172
            IN    +     + D +E++        +  G  +        +   +NL +  P    
Sbjct: 335 KINDVKWLAQGTIYPDCIESL--------SITGTVIKSHHNVGGLPEKMNLKLCEPLRLL 386

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 387 FKDEVRRVGRELGMP 401


>gi|302332128|gb|ADL22321.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|300709585|ref|YP_003735399.1| tRNA methyl transferase [Halalkalicoccus jeotgali B3]
 gi|299123268|gb|ADJ13607.1| tRNA methyl transferase [Halalkalicoccus jeotgali B3]
          Length = 288

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 56/201 (27%), Gaps = 44/201 (21%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +S  E +      L     +LVA SGG DS  +    +  L +         A +     
Sbjct: 1   MSTEEKLAAARADLATEEGVLVAFSGGVDSSAVAAIAYDALGE------DAVACT----- 49

Query: 63  RETA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISE 112
              +      E+     V   + I H +V +         K         R  R   + E
Sbjct: 50  -AKSETLPDAELEDARRVAGEIGIRHEIVEFSELDDPEFVKNDGDRCYHCRSMRLGKMFE 108

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL-SGMCDTILYDLNLWISRPFL- 170
            A  +   ++       D                G G   G+      D       P L 
Sbjct: 109 RAAELGIPVVCDGTNASD---------------PGEGHRPGLQAVAELDAR----SPLLD 149

Query: 171 -RCRREDIRSFLLQRNISWCE 190
               ++D+R      ++S  E
Sbjct: 150 HDITKDDVREIAATYDLSVAE 170


>gi|282926485|ref|ZP_06334116.1| GMP synthase [Staphylococcus aureus A9765]
 gi|282592205|gb|EFB97225.1| GMP synthase [Staphylococcus aureus A9765]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|258436914|ref|ZP_05689254.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9299]
 gi|257848705|gb|EEV72692.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9299]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|258424557|ref|ZP_05687434.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9635]
 gi|257845152|gb|EEV69189.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9635]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|239826405|ref|YP_002949029.1| exsB protein [Geobacillus sp. WCH70]
 gi|259551536|sp|C5D7Y2|QUEC_GEOSW RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|239806698|gb|ACS23763.1| exsB protein [Geobacillus sp. WCH70]
          Length = 221

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   L  AL            +  A++ D+  R   + E+   + +   L
Sbjct: 7  IVV-FSGGQDSTTCLFWALKQFD--------EVEAVTFDYGQRH--RLEIEVAASIAKEL 55

Query: 81 RIAHSVVS 88
           + H+V+ 
Sbjct: 56 GVPHTVLD 63


>gi|82750102|ref|YP_415843.1| GMP synthase [Staphylococcus aureus RF122]
 gi|91206830|sp|Q2YVL5|GUAA_STAAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|82655633|emb|CAI80029.1| glutamine-hydrolyzing GMP synthase [Staphylococcus aureus RF122]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|57652648|ref|YP_185351.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus COL]
 gi|87160103|ref|YP_493103.1| GMP synthase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194173|ref|YP_498964.1| GMP synthase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151220593|ref|YP_001331415.1| GMP synthase [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161508662|ref|YP_001574321.1| GMP synthase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141367|ref|ZP_03565860.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452995|ref|ZP_05700988.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A5948]
 gi|262048950|ref|ZP_06021830.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus D30]
 gi|262052555|ref|ZP_06024751.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus 930918-3]
 gi|284023425|ref|ZP_06377823.1| GMP synthase [Staphylococcus aureus subsp. aureus 132]
 gi|294850039|ref|ZP_06790777.1| guaA [Staphylococcus aureus A9754]
 gi|304380398|ref|ZP_07363078.1| GMP synthase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|71152095|sp|Q5HIQ6|GUAA_STAAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122540206|sp|Q2G0Y6|GUAA_STAA8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123487241|sp|Q2FJM5|GUAA_STAA3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739743|sp|A6QE71|GUAA_STAAE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739744|sp|A8Z0R1|GUAA_STAAT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57286834|gb|AAW38928.1| GMP synthase [Staphylococcus aureus subsp. aureus COL]
 gi|87126077|gb|ABD20591.1| GMP synthase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87201731|gb|ABD29541.1| GMP synthase, putative [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|150373393|dbj|BAF66653.1| glutamine-hydrolyzing GMP synthase [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160367471|gb|ABX28442.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257859205|gb|EEV82060.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A5948]
 gi|259159536|gb|EEW44584.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus 930918-3]
 gi|259163022|gb|EEW47584.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus D30]
 gi|269939968|emb|CBI48341.1| putative GMP synthase [Staphylococcus aureus subsp. aureus TW20]
 gi|294823173|gb|EFG39604.1| guaA [Staphylococcus aureus A9754]
 gi|302750282|gb|ADL64459.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304341073|gb|EFM06993.1| GMP synthase [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198075|gb|EFU28407.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139299|gb|EFW31178.1| GMP synthase protein [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320142849|gb|EFW34645.1| GMP synthase protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329313107|gb|AEB87520.1| GMP synthase [Staphylococcus aureus subsp. aureus T0131]
 gi|329724256|gb|EGG60769.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|21282096|ref|NP_645184.1| GMP synthase [Staphylococcus aureus subsp. aureus MW2]
 gi|49485271|ref|YP_042492.1| GMP synthase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297209095|ref|ZP_06925494.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300911096|ref|ZP_07128545.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|24211742|sp|Q8NY69|GUAA_STAAW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56748992|sp|Q6GC81|GUAA_STAAS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21203532|dbj|BAB94232.1| GMP synthase [Staphylococcus aureus subsp. aureus MW2]
 gi|49243714|emb|CAG42139.1| putative GMP synthase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|283469695|emb|CAQ48906.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Staphylococcus aureus subsp. aureus
           ST398]
 gi|296886028|gb|EFH24962.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300887275|gb|EFK82471.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|329732341|gb|EGG68691.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|15923381|ref|NP_370915.1| GMP synthase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926092|ref|NP_373625.1| GMP synthase [Staphylococcus aureus subsp. aureus N315]
 gi|49482642|ref|YP_039866.1| GMP synthase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|148266876|ref|YP_001245819.1| GMP synthase [Staphylococcus aureus subsp. aureus JH9]
 gi|150392922|ref|YP_001315597.1| GMP synthase [Staphylococcus aureus subsp. aureus JH1]
 gi|156978719|ref|YP_001440978.1| GMP synthase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316508|ref|ZP_04839721.1| GMP synthase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253730756|ref|ZP_04864921.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253735137|ref|ZP_04869302.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005187|ref|ZP_05143788.2| GMP synthase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257424535|ref|ZP_05600964.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427202|ref|ZP_05603604.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429838|ref|ZP_05606225.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257432541|ref|ZP_05608904.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435445|ref|ZP_05611496.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus M876]
 gi|257794224|ref|ZP_05643203.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9781]
 gi|258413490|ref|ZP_05681765.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9763]
 gi|258421387|ref|ZP_05684314.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9719]
 gi|258444369|ref|ZP_05692703.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A8115]
 gi|258444907|ref|ZP_05693228.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A6300]
 gi|258448112|ref|ZP_05696241.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A6224]
 gi|258455945|ref|ZP_05703900.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A5937]
 gi|269202037|ref|YP_003281306.1| GMP synthase [Staphylococcus aureus subsp. aureus ED98]
 gi|282893552|ref|ZP_06301785.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus A8117]
 gi|282902998|ref|ZP_06310891.1| GMP synthase [Staphylococcus aureus subsp. aureus C160]
 gi|282907394|ref|ZP_06315242.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282907737|ref|ZP_06315579.1| GMP synthase domain-containing protein [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282912624|ref|ZP_06320420.1| GMP synthase domain-containing protein [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282913249|ref|ZP_06321041.1| GMP synthase [Staphylococcus aureus subsp. aureus M899]
 gi|282915734|ref|ZP_06323504.1| GMP synthase [Staphylococcus aureus subsp. aureus D139]
 gi|282918197|ref|ZP_06325938.1| GMP synthase [Staphylococcus aureus subsp. aureus C427]
 gi|282922876|ref|ZP_06330566.1| guaA, GMP synthase [Staphylococcus aureus subsp. aureus C101]
 gi|282927446|ref|ZP_06335064.1| GMP synthase [Staphylococcus aureus A10102]
 gi|283768117|ref|ZP_06341032.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus H19]
 gi|283959850|ref|ZP_06377291.1| GMP synthase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293498299|ref|ZP_06666153.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509239|ref|ZP_06667957.1| GMP synthase [Staphylococcus aureus subsp. aureus M809]
 gi|293550504|ref|ZP_06673176.1| GMP synthase [Staphylococcus aureus subsp. aureus M1015]
 gi|295405663|ref|ZP_06815473.1| GMP synthase [Staphylococcus aureus A8819]
 gi|295426946|ref|ZP_06819585.1| GMP synthase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296276083|ref|ZP_06858590.1| GMP synthase [Staphylococcus aureus subsp. aureus MR1]
 gi|297245570|ref|ZP_06929438.1| GMP synthase [Staphylococcus aureus A8796]
 gi|297588839|ref|ZP_06947480.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus MN8]
 gi|54037236|sp|P99105|GUAA_STAAN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54041333|sp|P64296|GUAA_STAAM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56749046|sp|Q6GJQ6|GUAA_STAAR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739740|sp|A7WY93|GUAA_STAA1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739741|sp|A6TYP2|GUAA_STAA2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739742|sp|A5IPX0|GUAA_STAA9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|13700305|dbj|BAB41603.1| GMP synthase [Staphylococcus aureus subsp. aureus N315]
 gi|14246159|dbj|BAB56553.1| GMP synthase [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240771|emb|CAG39433.1| putative GMP synthase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|147739945|gb|ABQ48243.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945374|gb|ABR51310.1| GMP synthase, large subunit [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720854|dbj|BAF77271.1| GMP synthase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253725600|gb|EES94329.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253726937|gb|EES95666.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273553|gb|EEV05655.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276833|gb|EEV08284.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280319|gb|EEV10906.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283420|gb|EEV13552.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257286041|gb|EEV16157.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus M876]
 gi|257788196|gb|EEV26536.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9781]
 gi|257839737|gb|EEV64206.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9763]
 gi|257842811|gb|EEV67233.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A9719]
 gi|257850628|gb|EEV74576.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A8115]
 gi|257856225|gb|EEV79139.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A6300]
 gi|257858627|gb|EEV81501.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A6224]
 gi|257862157|gb|EEV84930.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus A5937]
 gi|262074327|gb|ACY10300.1| GMP synthase [Staphylococcus aureus subsp. aureus ED98]
 gi|282315097|gb|EFB45483.1| guaA, GMP synthase [Staphylococcus aureus subsp. aureus C101]
 gi|282317894|gb|EFB48262.1| GMP synthase [Staphylococcus aureus subsp. aureus C427]
 gi|282320363|gb|EFB50703.1| GMP synthase [Staphylococcus aureus subsp. aureus D139]
 gi|282323349|gb|EFB53668.1| GMP synthase [Staphylococcus aureus subsp. aureus M899]
 gi|282324320|gb|EFB54636.1| GMP synthase domain-containing protein [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282328642|gb|EFB58913.1| GMP synthase domain-containing protein [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330293|gb|EFB59814.1| bifunctional GMP synthase/glutamine amidotransferase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590770|gb|EFB95846.1| GMP synthase [Staphylococcus aureus A10102]
 gi|282597457|gb|EFC02416.1| GMP synthase [Staphylococcus aureus subsp. aureus C160]
 gi|282764238|gb|EFC04365.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus A8117]
 gi|283461996|gb|EFC09080.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus H19]
 gi|283789442|gb|EFC28269.1| GMP synthase [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816113|gb|ADC36600.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus
           04-02981]
 gi|290919551|gb|EFD96627.1| GMP synthase [Staphylococcus aureus subsp. aureus M1015]
 gi|291097230|gb|EFE27488.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467991|gb|EFF10499.1| GMP synthase [Staphylococcus aureus subsp. aureus M809]
 gi|294969738|gb|EFG45757.1| GMP synthase [Staphylococcus aureus A8819]
 gi|295129398|gb|EFG59025.1| GMP synthase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297177556|gb|EFH36807.1| GMP synthase [Staphylococcus aureus A8796]
 gi|297577350|gb|EFH96063.1| GMP synthase (glutamine-hydrolyzing) [Staphylococcus aureus subsp.
           aureus MN8]
 gi|298693727|gb|ADI96949.1| GMP synthase [Staphylococcus aureus subsp. aureus ED133]
 gi|312436494|gb|ADQ75565.1| GMP synthase [Staphylococcus aureus subsp. aureus TCH60]
 gi|312828911|emb|CBX33753.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315130041|gb|EFT86030.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315194874|gb|EFU25263.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus aureus subsp. aureus CGS00]
 gi|323439287|gb|EGA97012.1| GMP synthase [Staphylococcus aureus O11]
 gi|323442528|gb|EGB00156.1| GMP synthase [Staphylococcus aureus O46]
 gi|329725749|gb|EGG62228.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus aureus subsp. aureus 21172]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ K+         S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|314947948|ref|ZP_07851352.1| GMP synthase protein [Enterococcus faecium TX0082]
 gi|313645546|gb|EFS10126.1| GMP synthase protein [Enterococcus faecium TX0082]
          Length = 515

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 211 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTSIFVDHGLLRKG---EAE 261

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V+ ++         S P+        E  Y      ++ A    
Sbjct: 262 QVMESLGGKFGLNIIKVNARDRFLDKLKGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 321

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 322 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 375

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 376 ELGTQLGMPDSIVWR 390


>gi|262394626|ref|YP_003286480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
 gi|262338220|gb|ACY52015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. Ex25]
          Length = 374

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 53/196 (27%), Gaps = 41/196 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAHTFD----DQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            ++A  I   H       D  E    +R      ++   L  +    +         P  
Sbjct: 119 VLDADYIAMGHYVRRSFPDNGEKPAMLRGLDGNKDQSYFLYTLSHEQIGRS----LFPVG 174

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    ++ +
Sbjct: 175 DLEKPEVRRIAEEQGL 190


>gi|258615235|ref|ZP_05713005.1| GMP synthase [Enterococcus faecium DO]
          Length = 463

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 159 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTSIFVDHGLLRKG---EAE 209

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V+ ++         S P+        E  Y      ++ A    
Sbjct: 210 QVMESLGGKFGLNIIKVNARDRFLDKLKGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 269

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 270 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 323

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 324 ELGTQLGMPDSIVWR 338


>gi|124003360|ref|ZP_01688210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microscilla marina ATCC 23134]
 gi|123991458|gb|EAY30889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microscilla marina ATCC 23134]
          Length = 386

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 59/239 (24%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRY 72
           +     +LVA+SGG DS    + LH           +   I++   D+     +K E   
Sbjct: 1   MSKKGRVLVAMSGGIDSSLAAVLLHE-------QGYEVVGITMKTWDYASSGGSKKETGC 53

Query: 73  V--------SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYA 108
                     ++   L   H ++  +N          T      R            ++ 
Sbjct: 54  CSLDSINDARNIAVDLGFPHLILDIRNEFGDYVIDHFTNEYLDGRTPNPCVLCNTHIKWD 113

Query: 109 LISEHAKTINATLIMTAHTFDDQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            +   A  ++   I T H  + + E    V  +   +  ++   L G+    L       
Sbjct: 114 ALLRRADKLDCEHIATGHYANIREENGRYVISKGIDEGKDQSYALWGVSQQSLSRT---- 169

Query: 166 SRPFLRCRREDIRSFLLQRN------------ISWCEDPSNTDDRFERVRVRRFVRDID 212
             P  +  +  IR   ++R             I +  D     + + R  ++R V +++
Sbjct: 170 ILPLGQLYKSQIREMAIERGFVELVNKSESYEICFVPD-----NDY-RGFLKRRVPELE 222


>gi|74317769|ref|YP_315509.1| GMP synthase [Thiobacillus denitrificans ATCC 25259]
 gi|91206837|sp|Q3SI29|GUAA_THIDA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|74057264|gb|AAZ97704.1| GMP synthase [Thiobacillus denitrificans ATCC 25259]
          Length = 520

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VRS V    +++ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 216 VRSEVGSDEVILGLSGGVDSSVVAALLHRAVGD------QLTCVFVDNGLLRLN---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V       L +    V             S P+       RE  +    E  K   A  
Sbjct: 267 QVMETFAQNLGVKVIHVDATERFMRELAGVSDPEQKRKIIGREFVHVFQEEAEKLPKAKW 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+   ++++ +  K          +   L+L +  P     ++++R   
Sbjct: 327 LAQGTIYPDVIESASAKTKKAHTIKS---HHNVGGLPETLHLQLLEPLRELFKDEVRELG 383

Query: 182 LQRNISW 188
           +   +  
Sbjct: 384 IALGLPH 390


>gi|69247087|ref|ZP_00604219.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Enterococcus
           faecium DO]
 gi|257881344|ref|ZP_05660997.1| GMP synthase [Enterococcus faecium 1,231,502]
 gi|257890562|ref|ZP_05670215.1| GMP synthase [Enterococcus faecium 1,231,410]
 gi|260558263|ref|ZP_05830459.1| GMP synthase [Enterococcus faecium C68]
 gi|293562922|ref|ZP_06677389.1| GMP synthase [Enterococcus faecium E1162]
 gi|294623793|ref|ZP_06702621.1| GMP synthase [Enterococcus faecium U0317]
 gi|68194971|gb|EAN09438.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Enterococcus
           faecium DO]
 gi|257817002|gb|EEV44330.1| GMP synthase [Enterococcus faecium 1,231,502]
 gi|257826922|gb|EEV53548.1| GMP synthase [Enterococcus faecium 1,231,410]
 gi|260075437|gb|EEW63743.1| GMP synthase [Enterococcus faecium C68]
 gi|291596747|gb|EFF27970.1| GMP synthase [Enterococcus faecium U0317]
 gi|291605048|gb|EFF34515.1| GMP synthase [Enterococcus faecium E1162]
          Length = 521

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 217 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTSIFVDHGLLRKG---EAE 267

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V+ ++         S P+        E  Y      ++ A    
Sbjct: 268 QVMESLGGKFGLNIIKVNARDRFLDKLKGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 328 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|325266943|ref|ZP_08133614.1| GMP synthase [Kingella denitrificans ATCC 33394]
 gi|324981684|gb|EGC17325.1| GMP synthase [Kingella denitrificans ATCC 33394]
          Length = 546

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR     E  
Sbjct: 236 IREQVGNDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN---EAE 286

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V       L +   V+    S+           P+        E      +E  K  NA
Sbjct: 287 NVMKMFADNLGV--RVIHVDASEQFMAKLAGVTDPEQKRKIIGAEFIEVFDAEEKKLTNA 344

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++ L +  P     ++++R 
Sbjct: 345 KWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRE 401

Query: 180 FLLQRNIS 187
             +   + 
Sbjct: 402 LGVALGLP 409


>gi|284929056|ref|YP_003421578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [cyanobacterium UCYN-A]
 gi|284809515|gb|ADB95220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [cyanobacterium UCYN-A]
          Length = 352

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 53/200 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-------------SAISVDHCLRETA 66
           + I+V +SGG DS     +L     + S   +                A  +        
Sbjct: 2   SKIVVGLSGGVDSSVAAASLCDQGYEVSGLTLWLMKGKGQCCSEGMVDAAHI-------- 53

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK-----------NSKPQTGL----MAAA-REARYA-L 109
                     C +L I H +V  K            S  ++G+     +   R  ++  +
Sbjct: 54  ----------CEQLNIPHYIVDAKELFKKNIIDYLVSGYKSGITPLPCSQCNRSVKFKPM 103

Query: 110 ISEHAKTINATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           +    + ++  LI T H      D+ ET   +  R           + D +  D+     
Sbjct: 104 LDYAQQELDCDLIATGHYARIRYDK-ETDKYKLLRAIDPNKDQSYFLYD-LPQDILAKTI 161

Query: 167 RPFLRCRREDIRSFLLQRNI 186
            P     +ED R    +  +
Sbjct: 162 FPLGEQTKEDTRRMATEFKL 181


>gi|207721418|ref|YP_002251859.1| sulfate adenylyltransferase subunit 2 protein [Ralstonia
           solanacearum MolK2]
 gi|207742602|ref|YP_002258994.1| sulfate adenylyltransferase subunit 2 protein [Ralstonia
           solanacearum IPO1609]
 gi|206586577|emb|CAQ17164.1| sulfate adenylyltransferase subunit 2 protein [Ralstonia
           solanacearum MolK2]
 gi|206593996|emb|CAQ60923.1| sulfate adenylyltransferase subunit 2 protein [Ralstonia
           solanacearum IPO1609]
          Length = 314

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H  +E      + V+++ +RL +
Sbjct: 43  FSGGKDSIVMLHLALKAFRLGDRKIELPFPLVHIDTGHNYQEVIAFRDQRVAELGARLVV 102

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  ++     +M     D
Sbjct: 103 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIESHGFDALMGGARRD 150


>gi|317482305|ref|ZP_07941326.1| GMP synthase domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916321|gb|EFV37722.1| GMP synthase domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 520

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREQVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNS--KPQTGLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +       G+    R              +A+  ++ E  
Sbjct: 260 QVKHDFVAATGIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 320 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDIKFQLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|282163083|ref|YP_003355468.1| GMP synthase [glutamine-hydrolyzing] subunit B [Methanocella
           paludicola SANAE]
 gi|282155397|dbj|BAI60485.1| GMP synthase [glutamine-hydrolyzing] subunit B [Methanocella
           paludicola SANAE]
          Length = 304

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 19/179 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++S V     L+A+SGG DS    I  H  L +R         + VD  L R+   D +R
Sbjct: 14  IKSKVKDGRALIALSGGVDSSVCAILAHRALGER------LVPVYVDTGLMRKGETDRIR 67

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL---ISEHAKTINATLIMTAHTF 128
            +    +   +  S   +   K  T      +           + A+ INA  ++    +
Sbjct: 68  DIFSFMNPRIVDASGQFFNALKGATDPEKKRKAVGETFIRVFEQVARDINADYLIQGTIY 127

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            D++E           +    + GM   + +     +  P     ++++R       + 
Sbjct: 128 PDRIE------SEGGIKSHHNVGGMPSVMEFKG---VVEPIGDLYKDEVREVARALGLP 177


>gi|228470931|ref|ZP_04055776.1| GMP synthase [Porphyromonas uenonis 60-3]
 gi|228307328|gb|EEK16342.1| GMP synthase [Porphyromonas uenonis 60-3]
          Length = 506

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 27/178 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R-ETAKDEV 70
           +++ V    +++A+SGG DS    + LH  + D      + + I VDH L R   A    
Sbjct: 206 IQAQVGDEQVIMALSGGVDSSVAAVLLHRAIGD------QLTCIFVDHGLMRLGEA---E 256

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
           + ++D    L +    V               P+       R+      +E  K   A  
Sbjct: 257 QILADY-KALGLGCIKVDASAKFLDDLAGVRDPEAKRKVIGRDFIEVFEAEAKKLPQARW 315

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +     + D +E++      +   K +        +   ++L +  P     ++++R 
Sbjct: 316 LGQGTIYPDIIESI------NITGKVIKSHHNVGGLPERMHLKLVEPLKHLFKDEVRR 367


>gi|57640895|ref|YP_183373.1| ATPase [Thermococcus kodakarensis KOD1]
 gi|57159219|dbj|BAD85149.1| predicted ATPase, PP-loop superfamily [Thermococcus kodakarensis
           KOD1]
          Length = 272

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 58/208 (27%), Gaps = 40/208 (19%)

Query: 1   MFLSPIESVRFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M    IE  R F  +  ++   +L+  SGG DS   L  L           +  SA++  
Sbjct: 1   MLAEVIEETRKFAEKKGLFEKRVLMLFSGGKDSSLALYILKE-------AGLDVSALTFF 53

Query: 60  HCLRETAKDE-VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE------------AR 106
           H     +  E + +      +L + H +V            A  R+              
Sbjct: 54  HRW---SWRETLNWAMRFTKKLSVEHYLVDIT---EGLLREAVGRKGPVCINCKKVMLWN 107

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
                  A      ++      +D++    +               +    +  + +   
Sbjct: 108 AKWF---ALNSGFDVLAKGDNANDKIIGALLDQCEGD---------IRLCEIPRMGIPFF 155

Query: 167 RPFLRCRREDIRSFLLQRNI-SWCEDPS 193
           RP ++   E +     +  I  +     
Sbjct: 156 RPLIKYPAEIVEELAEEAGIRPYRMYEH 183


>gi|205814741|sp|A8AHK2|MNMA_CITK8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 4   SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 54  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 113

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 114 FAAEDLGADYIATGHYVRRADVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 169

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 170 VGELEKPQVRKIAEDLGL 187


>gi|170758983|ref|YP_001788227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|205810606|sp|B1KZJ2|MNMA2_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|169405972|gb|ACA54383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 353

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 35/129 (27%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDEVRYV 73
           + +A+SGG DS      L            +   I +D   R+         A ++ R V
Sbjct: 6   VALAMSGGVDSSVSAYILKE-------RGYEVIGIYMD-LWRDEREEYCNKSAAEDARRV 57

Query: 74  SDVCSRLRIAHSVVSW---------------KNSKPQTGLMAAARE-ARYALISEHAKTI 117
                +L I   +++                  S        A  +  ++      AK  
Sbjct: 58  ---AEKLDIPFHIINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEF 114

Query: 118 NATLIMTAH 126
            A  + T H
Sbjct: 115 GADFMATGH 123


>gi|222480998|ref|YP_002567235.1| GMP synthase, large subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|254799663|sp|B9LTX1|GUAAB_HALLT RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|222453900|gb|ACM58165.1| GMP synthase, large subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 305

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 20/189 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             I   +  +R  +  A+ ++A+SGG DS       +  + D      + + + VD  L 
Sbjct: 6   EFIAEAKAEIREAIGDANAVIALSGGVDSSVAATLAYEAVGD------QLTPVYVDTGLM 59

Query: 63  RETAKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYAL---ISEHAKTIN 118
           R+   +E+R        LR I      +      T                    A  + 
Sbjct: 60  RKGETEEIRETFSFMESLRVIEAQERFFDRLAGVTDPEEKRHVIGEGFIDEFETVANDVG 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  ++    + D++E           +    + G+ D + ++    I  P     ++++R
Sbjct: 120 ADYLVQGTIYPDRIE------SEGNIKSHHNVGGLPDIVDFEG---IVEPVRDLYKDEVR 170

Query: 179 SFLLQRNIS 187
                  + 
Sbjct: 171 EVARALGLE 179


>gi|326332153|ref|ZP_08198435.1| tRNA methyl transferase [Nocardioidaceae bacterium Broad-1]
 gi|325950051|gb|EGD42109.1| tRNA methyl transferase [Nocardioidaceae bacterium Broad-1]
          Length = 261

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 84/256 (32%), Gaps = 33/256 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VDHCLRETAKDEVRYVSDVCSRLR 81
           LVA SGG+DS  LL A     + R+ G    +A +   H L   ++ +    ++    L 
Sbjct: 2   LVAFSGGADSAFLLAA-----ATRALGSADVAAATGYSHSL-PVSERDPA--AEFARSLG 53

Query: 82  IA------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +       H +         T      +      ++  A+ +    + T    DD +E  
Sbjct: 54  VRLITPQTHEMEREGYRANGTDRCFFCKAELLDTLTPLARELGLAHVATGTNADDAIE-- 111

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDPS 193
                        GL+G+   I          P       +  IR    + ++   + P+
Sbjct: 112 -------------GLNGLRPGIRAAAERGAITPLKDAGLTKAQIREASRRWDLPTWDKPA 158

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
                  R+     V    L  +    +  + L     +  A +  +      ++ + +S
Sbjct: 159 AACLS-SRIAYGLEVTPRRLARVEQAEQGVRSLLATHGHDAARVDLRVRDHGEKATVELS 217

Query: 254 QDILNIDSTLLFYLLR 269
            ++L +D      +LR
Sbjct: 218 ANLLPLDPDHADEVLR 233


>gi|313638402|gb|EFS03604.1| GMP synthase (glutamine-hydrolyzing) [Listeria seeligeri FSL
           S4-171]
          Length = 414

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +       + I       +        S+P+        E  Y    E  K      
Sbjct: 264 QVMETLQGEFNMNIIKVDAKKRFMDKLAGVSEPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|291085497|ref|ZP_06353231.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter youngae ATCC 29220]
 gi|291071151|gb|EFE09260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter youngae ATCC 29220]
          Length = 383

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 19  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 68

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 69  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 128

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 129 FAAEDLGADYIATGHYVRRADVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 184

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 185 VGELEKPQVRKIAEDLGL 202


>gi|253577510|ref|ZP_04854824.1| GMP synthase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843129|gb|EES71163.1| GMP synthase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 512

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 25/191 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           ++VR  +R+ V    +L A+SGG DS  + + +H  + D      + + + +DH  LR+ 
Sbjct: 206 DAVRD-IRTQVGDGKVLCALSGGVDSSVVAMLIHKAIGD------QLTCMFIDHGLLRKG 258

Query: 66  AKDE--VRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKT 116
             +     +V      +++       +          P+        E  Y    E AK 
Sbjct: 259 EAESVMETFVGKF--DMKVVKIDARERFLSKLAGVDDPEQKRKIIGNEFIYVFDEESAKF 316

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            + T +     + D +E            + +        +  D+   +  P     +++
Sbjct: 317 DDFTYLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMKFKLIEPLKTLFKDE 370

Query: 177 IRSFLLQRNIS 187
           +R    +  + 
Sbjct: 371 VRKVGEELGLP 381


>gi|237731114|ref|ZP_04561595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter sp. 30_2]
 gi|226906653|gb|EEH92571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter sp. 30_2]
          Length = 383

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 19  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 68

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 69  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 128

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 129 FAAEDLGADYIATGHYVRRADVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 184

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 185 VGELEKPQVRKIAEDLGL 202


>gi|170289520|ref|YP_001739758.1| ExsB family protein [Thermotoga sp. RQ2]
 gi|170177023|gb|ACB10075.1| ExsB family protein [Thermotoga sp. RQ2]
          Length = 303

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 54/182 (29%), Gaps = 50/182 (27%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDV 76
               + VA SGG DS      L ++L+  + G+ +   ++VD        +     V + 
Sbjct: 2   KDGKLYVAFSGGKDSS-----LVAILAKMALGEERVELVTVD--WGPYTYERSREIVRNF 54

Query: 77  CSRLRIAHSVVS-----WKNSKPQTGLMAAAREA------RYALISEHAKTINATLIMTA 125
             +  + H+ +       K  +      A  R+       RYA            L+ + 
Sbjct: 55  AEKHGLKHTFIPSNRMQEKVWRHGPSCNACTRDVKTVLVKRYA---------QGHLVASG 105

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
               D                     G     ++D    +  P  R  +E+I   L    
Sbjct: 106 ANASD-------------------SWGKTGLKIFDG---VYSPLYRVGKEEINEMLKFLG 143

Query: 186 IS 187
           + 
Sbjct: 144 LE 145


>gi|24638328|sp|Q98HL0|MNMA_RHILO RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 396

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 58/202 (28%), Gaps = 45/202 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                I+VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V   L I H V+ ++    +  +   A                   ++A +   A
Sbjct: 66  DDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFADLLATA 125

Query: 115 KTINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           K + A  + T H                    R      ++   L       +     ++
Sbjct: 126 KELGADALATGHYIRSGANGAHR------ALYRPVDADRDQSYFLFATTQAQI----DYL 175

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     +  +R+   +  ++
Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLT 197


>gi|325270155|ref|ZP_08136762.1| transcription regulator ExsB [Prevotella multiformis DSM 16608]
 gi|324987456|gb|EGC19432.1| transcription regulator ExsB [Prevotella multiformis DSM 16608]
          Length = 218

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 53/193 (27%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +I   AIS D+  +     E+ +    C++L I H 
Sbjct: 8   VSGGLDSVTLLY--------DKAEEIAL-AISFDYG-QNHGARELPFAEYHCTKLGIPHI 57

Query: 86  VV--SWKNSKPQTGLMAAAR---EARY------------------ALISEHAKTINATLI 122
            +  S+ +   ++ L+  A    E  Y                  A+ +  A++     +
Sbjct: 58  TIPLSFMHRYFKSSLLDGAEAIPEGHYAEENMKSTVVPFRNGIMLAIATGIAESHGLKRV 117

Query: 123 MTAHTFDDQLETV-------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             A+   D   T+       ++R+    A  G  +           N+ I  P+    + 
Sbjct: 118 YIANHGGDH--TIYPDCRPDFIRAMDGAATAGTFV-----------NVRIEAPYTNITKA 164

Query: 176 DIRSFLLQRNISW 188
           DI       +I +
Sbjct: 165 DIVRRGTALDIDY 177


>gi|157146082|ref|YP_001453401.1| tRNA-specific 2-thiouridylase MnmA [Citrobacter koseri ATCC
           BAA-895]
 gi|157083287|gb|ABV12965.1| hypothetical protein CKO_01838 [Citrobacter koseri ATCC BAA-895]
          Length = 383

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 49/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 19  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 68

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 69  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 128

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A+ + A  I T H     D   ++  +R      ++   L  +    +         P
Sbjct: 129 FAAEDLGADYIATGHYVRRADVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFP 184

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R       +
Sbjct: 185 VGELEKPQVRKIAEDLGL 202


>gi|29840118|ref|NP_829224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila caviae GPIC]
 gi|33301704|sp|Q820E9|MNMA_CHLCV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|29834466|gb|AAP05102.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlamydophila caviae GPIC]
          Length = 360

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 35/191 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRYVS 74
           ++VA+SGG DS  +   L +    +  G              E   D       +   V 
Sbjct: 5   VVVAMSGGVDSSVVAYLLKTTTPYKVIGLFMK-------NWEEEDSDGLCSTAKDYEDVE 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
            V  +L I +  VS+     +                       RE ++ L+    + + 
Sbjct: 58  RVAGQLDIPYYTVSFAKEYRERVFSRFLREYSKGYTPNPDVLCNREIKFDLLQRKVRELG 117

Query: 119 ATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              + T H        E       R    +      +C T    L+  +  P     +  
Sbjct: 118 GDFLATGHYCRLSSAAEGR--HLLRGLDPQKDQSYFLCGTRRESLDNVLF-PLGGMTKTK 174

Query: 177 IRSFLLQRNIS 187
           +R+   Q  ++
Sbjct: 175 VRAIAEQARLA 185


>gi|315281840|ref|ZP_07870382.1| GMP synthase (glutamine-hydrolyzing) [Listeria marthii FSL S4-120]
 gi|313614515|gb|EFR88117.1| GMP synthase (glutamine-hydrolyzing) [Listeria marthii FSL S4-120]
          Length = 394

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 30/193 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +       + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWCE 190
            +      I W  
Sbjct: 382 TELGMPDAIVWRH 394


>gi|330930353|ref|XP_003302998.1| hypothetical protein PTT_15010 [Pyrenophora teres f. teres 0-1]
 gi|311321300|gb|EFQ88898.1| hypothetical protein PTT_15010 [Pyrenophora teres f. teres 0-1]
          Length = 541

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 40/203 (19%)

Query: 13  VRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R LV     ++ AVSGG DS      +   + DR      F A+ VD+  LR     E 
Sbjct: 226 IRKLVGDKGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVMVDNGVLRLN---EA 276

Query: 71  RYVSDVCSR-LRIAHSVVSWKN--SKPQTGLMAAAREARY-------ALISEHAKTINAT 120
             V       L I  +V+   +       G+     + R         +  + A+ I A 
Sbjct: 277 VQVKKTLDEGLGINLTVIDASDLFLDRLKGVTDDPEKKRKIIGNTFIEVFQQQAEKIKAE 336

Query: 121 LIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------LYDLNLWISRP 168
               AH      + +E +   +      + +   G   TI           D+ L +  P
Sbjct: 337 ----AHESANAGE-IEWLLQGTLYPDVIESLSFKGPSQTIKTHHNVGGLPKDMKLKVIEP 391

Query: 169 FLRCRREDIRSFLLQRNISWCED 191
                ++++R    +  I   ED
Sbjct: 392 LRELFKDEVRQLGKELGIP--ED 412


>gi|283784944|ref|YP_003364809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter rodentium ICC168]
 gi|282948398|emb|CBG87986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Citrobacter rodentium ICC168]
          Length = 368

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 34/135 (25%), Gaps = 36/135 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 4   SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 54  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 113

Query: 112 EHAKTINATLIMTAH 126
             A+ + A  I T H
Sbjct: 114 FAAEDLGADYIATGH 128


>gi|284992813|ref|YP_003411367.1| GMP synthase large subunit [Geodermatophilus obscurus DSM 43160]
 gi|284066058|gb|ADB76996.1| GMP synthase, large subunit [Geodermatophilus obscurus DSM 43160]
          Length = 520

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 29/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V     L A+SGG DS     A+ + L  R+ G  + + + VDH L RE   +++ 
Sbjct: 209 IRAQVGDRRALCALSGGVDS-----AVAAALVQRAIGD-RLTCVYVDHGLMREGETEQIE 262

Query: 72  --YVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTINATLIMT 124
             +V+   + LR+  +   +       S P+       RE    +  + A  + A     
Sbjct: 263 RDFVAVTGADLRVVDAREQFLGALAGISDPEQKRKTIGREF-IRVFEQAALDVVADAKAH 321

Query: 125 AHTFD---------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             T D         D +E+             +        +  DL   +  P     ++
Sbjct: 322 GETVDFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLTFTLVEPLRTLFKD 376

Query: 176 DIRSFLLQRNIS 187
           ++R   LQ  + 
Sbjct: 377 EVREVGLQLGLP 388


>gi|218888208|ref|YP_002437529.1| GMP synthase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226738437|sp|B8DNB9|GUAA_DESVM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218759162|gb|ACL10061.1| GMP synthase, large subunit [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 515

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 24/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +   V   H++ A+SGG DS  + + LH  +  R         I VD+  L
Sbjct: 203 SFVERAIKEMAETVGDRHVVCALSGGIDSTVVAVLLHKAIGKR------LHCIFVDNGVL 256

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREAR---YALISEHAKT 116
           R     E   V D       L + +     +      G+    ++ +   Y  I    + 
Sbjct: 257 RLNEGQE---VVDYLREHFDLNLKYVQAQRRFLDKLEGVEDPEQKRKIIGYTFIEVFDEE 313

Query: 117 INA----TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             A      +     + D +E+V  +      +    + G+ +     +NL +  P    
Sbjct: 314 AKALGHVDFLAQGTLYPDVIESVSHKGPSAVIKSHHNVGGLPEK----MNLKLIEPLREL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 370 FKDEVRKVAGELGLP 384


>gi|189194249|ref|XP_001933463.1| GMP synthase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187979027|gb|EDU45653.1| GMP synthase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 541

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 40/203 (19%)

Query: 13  VRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R LV     ++ AVSGG DS      +   + DR      F A+ VD+  LR     E 
Sbjct: 226 IRKLVGDKGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVMVDNGVLRLN---EA 276

Query: 71  RYVSDVCSR-LRIAHSVVSWKN--SKPQTGLMAAAREARY-------ALISEHAKTINAT 120
             V       L I  +V+   +       G+     + R         +  + A+ I A 
Sbjct: 277 VQVKKTLDEGLGINLTVIDASDLFLDRLKGVTDDPEKKRKIIGNTFIEVFQQQAEKIKAE 336

Query: 121 LIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------LYDLNLWISRP 168
               AH      + +E +   +      + +   G   TI           D+ L +  P
Sbjct: 337 ----AHESANAGE-IEWLLQGTLYPDVIESLSFKGPSQTIKTHHNVGGLPKDMKLKVIEP 391

Query: 169 FLRCRREDIRSFLLQRNISWCED 191
                ++++R    +  I   ED
Sbjct: 392 LRELFKDEVRQLGKELGIP--ED 412


>gi|83859630|ref|ZP_00953150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83851989|gb|EAP89843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 433

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 56/199 (28%), Gaps = 41/199 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++ A+SGG DS  +   LH          ++      DH     R+    A  ++
Sbjct: 72  PSDHRVVAAMSGGVDSSVVAAVLHRAGYQVVGMTLQLY----DHGEAVHRKGACCAGQDI 127

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISEHA 114
                V   +  AH V+ ++    +  +   A                       +   +
Sbjct: 128 HDARRVAEAMGFAHYVLDYETRFREAVIEDFADTYLAGFTPIPCVRCNQSVKFADLLATS 187

Query: 115 KTINATLIMTAHTFDDQLETVYMRS-------QRDYAEKGMGLSGMCDTILYDLNLWISR 167
           K + A  ++T H           R+        R  A+ G   S        +   ++  
Sbjct: 188 KQLGADCLVTGH--------YIQRTMSGNRPELRRAADAGKDQSYFLFATTEEQLDYLRF 239

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     +E  R       +
Sbjct: 240 PLGHLNKEQTRELAAALGL 258


>gi|262306019|gb|ACY45602.1| gln amidotransferase [Ctenolepisma lineata]
          Length = 197

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDE 69
            +V+  V    +L+ +SGG DS      LH  L +      +  A+ +D+   R+    E
Sbjct: 35  RYVKESVGNNKVLLLISGGVDSTVCAALLHKALRED-----QVIAVHIDNGFMRKN---E 86

Query: 70  VRYVSDVCSRLRIAHSVVS 88
            + V     +L +   VV 
Sbjct: 87  SQRVEQSLEKLGLRIKVVK 105


>gi|205822040|sp|A9MG80|MNMA_SALAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 34/135 (25%), Gaps = 36/135 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 4   SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 54  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 113

Query: 112 EHAKTINATLIMTAH 126
             A+ + A  I T H
Sbjct: 114 FAAEDLGADYIATGH 128


>gi|154252635|ref|YP_001413459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156585|gb|ABS63802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
          Length = 462

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 26/132 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET---AKDEV 70
                ++VA+SGG DS      L     D     ++      DH     R+    A  ++
Sbjct: 76  PEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLY----DHGAAVSRKGACCAGQDI 131

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHA 114
           +    V  ++ I H V+ +++   +  +   A                   ++  + + A
Sbjct: 132 QDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCNERVKFRDLLDTA 191

Query: 115 KTINATLIMTAH 126
           + + A  + T H
Sbjct: 192 RDLGAAALATGH 203


>gi|161503672|ref|YP_001570784.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865019|gb|ABX21642.1| hypothetical protein SARI_01756 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 383

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 34/135 (25%), Gaps = 36/135 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
            P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 19  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 68

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  VC +L I    V++                +  R               A + 
Sbjct: 69  DLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLE 128

Query: 112 EHAKTINATLIMTAH 126
             A+ + A  I T H
Sbjct: 129 FAAEDLGADYIATGH 143


>gi|292488015|ref|YP_003530892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora CFBP1430]
 gi|292899233|ref|YP_003538602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora ATCC 49946]
 gi|291199081|emb|CBJ46192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora ATCC 49946]
 gi|291553439|emb|CBA20484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora CFBP1430]
          Length = 369

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 39/194 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMK--------NWEEEDGEEYCTAAEDLAD 57

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHAK 115
              VC +L I    +++              E +                  A +   A+
Sbjct: 58  AQAVCDKLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAE 117

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A  I T H     D   ++  +R      ++   L  +    +         P    
Sbjct: 118 DLGADYIATGHYVRRQDVDGKSRLLRGLDGNKDQSYFLYTLSHQQIAQS----LFPVGEL 173

Query: 173 RREDIRSFLLQRNI 186
            + ++R    Q  +
Sbjct: 174 AKPEVRRIAEQLEL 187


>gi|237794469|ref|YP_002862021.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Ba4
           str. 657]
 gi|229262993|gb|ACQ54026.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Ba4
           str. 657]
          Length = 266

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 53/175 (30%), Gaps = 35/175 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + VA SGG DS  LL      L D +        I+V   L         +   ++ +
Sbjct: 16  GSVAVAFSGGVDSTLLLKVAKEALGDNAIS------ITV---LSPYIPKWEIKEAKELAN 66

Query: 79  RLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDDQLET 134
            + I    +     +  +          +  + S+    AK      I+     DD    
Sbjct: 67  HIGIKSYFLEVPMLEEIRFNPEDRCYICKKGVFSKIKELAKEKGVKYIVDGTNLDD---- 122

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNIS 187
                     +   G+  + +       L +  P L     +E+IR+   +  + 
Sbjct: 123 --------TKDYRPGMRALKE-------LDVKSPLLENSINKEEIRTLSKELGLE 162


>gi|227872194|ref|ZP_03990561.1| GMP synthase (glutamine-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841977|gb|EEJ52240.1| GMP synthase (glutamine-hydrolyzing) [Oribacterium sinus F0268]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 66/197 (33%), Gaps = 27/197 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +++ +    +L+A+SGG DS      L   +        +   + VDH  L
Sbjct: 200 SFVEEQVSLLKNKIGSGKVLLALSGGVDSSVAAGLLSRAIGK------QLYCVFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREARY-------ALIS 111
           R+   D+V  +     +     + V     +       G+     + R         +  
Sbjct: 254 RKNEGDQVEEI--FGEKGDFELNFVRVNAGEEYFEKLAGVEDP-EKKRKIIGEQFIRIFE 310

Query: 112 EHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             A  I     +     + D +E+   +     +   +G  G+   I +     I  P  
Sbjct: 311 REANKIGTVDFLAQGTIYADVVESGLGKGAVIKSHHNVG--GLPKNISFK---EIVEPLR 365

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   L+  + 
Sbjct: 366 LLFKDEVRKVGLELGLP 382


>gi|222529697|ref|YP_002573579.1| tRNA-specific 2-thiouridylase MnmA [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456544|gb|ACM60806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 360

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETA------K 67
              +LVA+SGG DS      L         +     + +      D  +RE +       
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETE----DELIREKSCCSLTAV 57

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           D+ R V+ +   L I + V + K+   +                       R+ ++ L  
Sbjct: 58  DDARRVAHI---LDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  +    I T H    + +    R   +R  A +      + +     L+  I  P 
Sbjct: 115 KKAMVLGMDYIATGHYAIIEYDKSLYRYILKRSKAREKDQTYVLYNMTQEMLSKTIF-PL 173

Query: 170 LRCRREDIRSFLLQRNIS 187
            R  ++++R    +  + 
Sbjct: 174 GRFSKDEVRKLAEKFKLP 191


>gi|254168882|ref|ZP_04875722.1| GMP synthase, C-terminal domain [Aciduliprofundum boonei T469]
 gi|197622146|gb|EDY34721.1| GMP synthase, C-terminal domain [Aciduliprofundum boonei T469]
          Length = 312

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 31/194 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE ++  +R        ++A SGG DS    + +H  ++D         AI VD    
Sbjct: 10  EKIEELKNEIR-----GKAIIACSGGVDSTVAAVLVHKAIND------NLLAIFVDTGFM 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT--GLMAAAREARY-------ALISEH 113
           R+   +E+     + SR+ + + +V       +   G+     + R         +    
Sbjct: 59  RKNEAEEID---GLFSRMGLNYKIVDASREFIEALKGVEDP-EKKRKIIGAKFIEVFERE 114

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+   A  ++      D +E              +        +   +NL +  P     
Sbjct: 115 AEEFGAEYLVQGTIAPDWIE------SGGGLRDTIKSHHNVGGLPEKMNLKLVEPLRELY 168

Query: 174 REDIRSFLLQRNIS 187
           ++++R      N+ 
Sbjct: 169 KDEVREIARFFNLE 182


>gi|308390015|gb|ADO32335.1| putative GMP synthetase [Neisseria meningitidis alpha710]
 gi|325129455|gb|EGC52285.1| GMP synthase [Neisseria meningitidis OX99.30304]
 gi|325135512|gb|EGC58130.1| GMP synthase [Neisseria meningitidis M0579]
          Length = 521

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISE 112
               E + V D     L +   V+     +           P+        E      +E
Sbjct: 258 N---EGKMVMDMFARNLGVK--VIHVDAERQFMAKLAGVTDPEKKRKIIGAEFIEVFDAE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +  ++ L +  P    
Sbjct: 313 EKKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 370 FKDEVRELGVALGLP 384


>gi|237749060|ref|ZP_04579540.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13]
 gi|229380422|gb|EEO30513.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13]
          Length = 367

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 55/200 (27%), Gaps = 46/200 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-- 75
               +++ +SGG DS      L     +     +K               D+  Y S   
Sbjct: 2   SKKKVVIGMSGGVDSSVSAWLLKEQGYEVVGLFMKNW----------EDDDDGEYCSARQ 51

Query: 76  -------VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                  V   + +   VV++     +       RE                       +
Sbjct: 52  DWLDAVSVADVIGVDIEVVNFAAEYKERVFSEFLREYEAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           HA ++ A  I T H       +   E   M++  D  ++   L  +    L         
Sbjct: 112 HAVSLGAEQIATGHYARVRENNGLFE--LMKAVDDTKDQSYFLHRLNQKQLSKA----IF 165

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P    R+ ++R    +  + 
Sbjct: 166 PLGEIRKTEVRKIAEKLGLP 185


>gi|227832922|ref|YP_002834629.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262182589|ref|ZP_06042010.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|254811450|sp|C3PFT7|MNMA_CORA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|227453938|gb|ACP32691.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 361

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 35/190 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAK-----DEVRYVS 74
            +LVA+SGG DS     A  +V +      +   A+  D    RE A+     ++     
Sbjct: 2   RVLVAMSGGVDSSV--AAARAVEAGHDVIGVHL-ALHKDAQQTREKARGCCSLEDSADAR 58

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA----AAR------------EARYALISEHAKTIN 118
            +C +L I   V  +     +  +       AR            + ++A +      + 
Sbjct: 59  RICDKLGIPFYVWDFSEEFKEAVIGDFVDSYARGETPNPCLRCNEKIKFAALLRKGMALG 118

Query: 119 ATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              + T H      D          R   ++    S +   I  +       P     + 
Sbjct: 119 FDAVATGHYATIDSD-------GYMRRSLDENKDQSYVLGVITKEELDHCFFPIGDTPKP 171

Query: 176 DIRSFLLQRN 185
            IR    +  
Sbjct: 172 QIREEAKRHG 181


>gi|153805563|ref|YP_001382138.1| hypothetical chloroplast RF62 [Leptosira terrestris]
 gi|134270094|gb|ABO69283.1| hypothetical chloroplast RF62 [Leptosira terrestris]
          Length = 315

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 2  FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           L  I++     R L     IL+++SGG DS+ L      +    ++     S +  +H 
Sbjct: 10 LLKIIDNTLNNKRLLEPNLSILLSISGGQDSVCLFFLFEILKIQWNW---NISIVYCNHL 66

Query: 62 LRETA 66
           ++ +
Sbjct: 67 WQKES 71



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 99  MAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEK 146
              +R  RY L  + +       ++T HT  D++ET+ +   R  A++
Sbjct: 267 EQKSRNWRYELWQKLSFFYEYKFLITGHTTTDRVETLLLNLVRGRAKR 314


>gi|83746683|ref|ZP_00943732.1| Sulfate adenylyltransferase subunit 2 [Ralstonia solanacearum
           UW551]
 gi|83726636|gb|EAP73765.1| Sulfate adenylyltransferase subunit 2 [Ralstonia solanacearum
           UW551]
          Length = 329

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H  +E      + V+++ +RL +
Sbjct: 58  FSGGKDSIVMLHLALKAFRLGDRKIELPFPLVHIDTGHNYQEVIAFRDQRVAELGARLVV 117

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  ++     +M     D
Sbjct: 118 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIESHGFDALMGGARRD 165


>gi|296388914|ref|ZP_06878389.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAb1]
 gi|313107663|ref|ZP_07793846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa 39016]
 gi|310880348|gb|EFQ38942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas aeruginosa 39016]
          Length = 363

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 42/193 (21%)

Query: 23  LVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
           +V +SGG DS    LL+       +  F K             E        A++++   
Sbjct: 2   IVGMSGGVDSSVSALLLLQQGYQVEGLFMK----------NWDEDDGTEYCTAREDLADA 51

Query: 74  SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTI 117
             VC R+ I     +     W N          A           RE ++    ++A  +
Sbjct: 52  QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 111

Query: 118 NATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A LI T H     D    T  ++      ++   L  +    +         P     +
Sbjct: 112 GADLIATGHYVRRRDRDGRTELLKGLDPNKDQSYFLHAVGGEQIARS----LFPVGELEK 167

Query: 175 EDIRSFLLQRNIS 187
            ++R+   +  ++
Sbjct: 168 PEVRAIAEKHGLA 180


>gi|88812303|ref|ZP_01127554.1| hypothetical protein NB231_02848 [Nitrococcus mobilis Nb-231]
 gi|88790554|gb|EAR21670.1| hypothetical protein NB231_02848 [Nitrococcus mobilis Nb-231]
          Length = 256

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 19/115 (16%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-------DHCLRETAKDEVR 71
           PA +L+A SGG DSM   +ALH++ +D  +  +      V        H +RE       
Sbjct: 11  PAKVLLAWSGGKDSM---LALHALQTDPRYEVVALLTTLVQEYRRISHHGVRE------P 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA---RYALISEHAKTINATLIM 123
            +    + L +    V    S        A  E    RYA    H        + 
Sbjct: 62  LLEQQAAALGLPLEKVYLPASSCTNAQYEACMERVLTRYAASGVHGVAHGDIFLA 116


>gi|306822887|ref|ZP_07456263.1| GMP synthase [Bifidobacterium dentium ATCC 27679]
 gi|309801283|ref|ZP_07695412.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bifidobacterium dentium JCVIHMP022]
 gi|304553519|gb|EFM41430.1| GMP synthase [Bifidobacterium dentium ATCC 27679]
 gi|308222172|gb|EFO78455.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bifidobacterium dentium JCVIHMP022]
          Length = 520

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+   ++VR
Sbjct: 209 IREKVGDAQVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKGEAEQVR 262

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAK 115
           +  D      I    V     +  +          R            +A+  +I E   
Sbjct: 263 H--DFVEATGIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGA 320

Query: 116 TINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      +   T   D +E+             +        +  D+   +  P     +
Sbjct: 321 SGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPDDIKFQLVEPLRTLFK 375

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 376 DEVRAIGTELGLP 388


>gi|254713616|ref|ZP_05175427.1| exsB protein [Brucella ceti M644/93/1]
 gi|254716030|ref|ZP_05177841.1| exsB protein [Brucella ceti M13/05/1]
 gi|261217798|ref|ZP_05932079.1| queuosine biosynthesis protein queC [Brucella ceti M13/05/1]
 gi|261321354|ref|ZP_05960551.1| queuosine biosynthesis protein queC [Brucella ceti M644/93/1]
 gi|260922887|gb|EEX89455.1| queuosine biosynthesis protein queC [Brucella ceti M13/05/1]
 gi|261294044|gb|EEX97540.1| queuosine biosynthesis protein queC [Brucella ceti M644/93/1]
          Length = 232

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H + ++     +    +S D+ LR   K E+ +      RL + H 
Sbjct: 7  CSGGLDSVSLA---HKMAAEHELTGL----LSFDYGLRH--KKELDFAQACAKRLGVPHQ 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDIR 62


>gi|187780206|ref|ZP_02996679.1| hypothetical protein CLOSPO_03802 [Clostridium sporogenes ATCC
           15579]
 gi|187773831|gb|EDU37633.1| hypothetical protein CLOSPO_03802 [Clostridium sporogenes ATCC
           15579]
          Length = 266

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 14/116 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + VA SGG DS  LL A    L D     I  + +                   ++ +
Sbjct: 16  GSVAVAFSGGVDSTLLLKAAKEALGD---NVISITVV------SPYIPKWEIEEAKELAN 66

Query: 79  RLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDD 130
            + I    +     +  +          +  + S+    AK      I+     DD
Sbjct: 67  NIGIKSYFLEVPMLEEIRFNPEDRCYICKKGVFSKIKELAKEKGVKYIVDGTNLDD 122


>gi|168177436|ref|ZP_02612100.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum
           NCTC 2916]
 gi|226947327|ref|YP_002802418.1| hypothetical protein CLM_0147 [Clostridium botulinum A2 str. Kyoto]
 gi|182670391|gb|EDT82365.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum
           NCTC 2916]
 gi|226842808|gb|ACO85474.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum A2
           str. Kyoto]
          Length = 268

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           + VA SGG DS  LL A    L D +   I  + +               R   ++  ++
Sbjct: 20  VAVAFSGGVDSTLLLKAAKEALGDNA---ISITIV------SPYIPKWEIREARELVDKI 70

Query: 81  RIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDD 130
            I    V     +  ++         + ++ ++    A+      I+     DD
Sbjct: 71  GIKSYFVEVPMLEEIRSNQEDRCYICKKSVFNKIKDLAREKGIKYIVDGTNEDD 124


>gi|152991082|ref|YP_001356804.1| GMP synthase [Nitratiruptor sp. SB155-2]
 gi|226739649|sp|A6Q4N8|GUAA_NITSB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|151422943|dbj|BAF70447.1| GMP synthase (glutamine-hydrolyzing) [Nitratiruptor sp. SB155-2]
          Length = 516

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 74/185 (40%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  +   L+  + D+         + VD+  LRE  +++V 
Sbjct: 213 IRQRVGEDKVLCALSGGVDSSVVTALLYEAIGDKLIP------VFVDNGLLREGEREKVE 266

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTI-NATLI 122
           YV    + L++   VV  K       +  T      +   +       E AK   +   +
Sbjct: 267 YVFK--NMLKVPLIVVDAKERFLNALQGITDPEQKRKIIGHTFIEVFEEEAKKHTDVKYL 324

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++   +  +    + G+ D + ++    +  P     ++++R   L
Sbjct: 325 AQGTLYPDVIESVSVKGPSETIKSHHNVGGLPDWMKFE----LIEPLRELFKDEVRKLGL 380

Query: 183 QRNIS 187
           +  + 
Sbjct: 381 ELGLP 385


>gi|325285134|ref|YP_004260924.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489]
 gi|324320588|gb|ADY28053.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489]
          Length = 396

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 33/132 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS      L     D     +K           + +    +E  ++ D 
Sbjct: 2   KKVVVGLSGGVDSSVTAYLLKEQGYDVIGLFMK--------NWHDDSVTISNECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V       +                       RE ++ +  + A
Sbjct: 54  NDALIVAEKLGIPFQTVDLSAEYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIA 113

Query: 115 KTINATLIMTAH 126
             + A  + T H
Sbjct: 114 MQLGADYVATGH 125


>gi|269838417|ref|YP_003320645.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787680|gb|ACZ39823.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sphaerobacter thermophilus DSM 20745]
          Length = 353

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 53/208 (25%), Gaps = 57/208 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF----------SAISVDHCLRETAKDE 69
           A ILVA+SGG DS    + L S+  +     ++                D      A  +
Sbjct: 2   ARILVALSGGVDSAVAALTLQSLGWEPIGIHLRLFDSDPESIAEGVCCGD-----QAAFD 56

Query: 70  VRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEH 113
            R V++    L I   V      +        + + AR              R   +   
Sbjct: 57  ARLVANW---LGIPFYVRDLREEFSREVAGMTVESYARAETPNPCIACNHRVRIPALLRL 113

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR------ 167
           A ++    + T H              R                  D +  + R      
Sbjct: 114 ADSLGIPAVATGH------------YVRKVRVGDRWYLAESRDGRRDQSYALYRLTSEDL 161

Query: 168 -----PFLRCRREDIRSFLLQRNISWCE 190
                P     +E +R       +   +
Sbjct: 162 ERLEFPLGELDKETVRQRARAAGLPVAD 189


>gi|254467069|ref|ZP_05080480.1| exsB protein [Rhodobacterales bacterium Y4I]
 gi|206687977|gb|EDZ48459.1| exsB protein [Rhodobacterales bacterium Y4I]
          Length = 233

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 37/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++  SGG DS+ L      V  +    ++    +S D+  R   + E+ Y +    RL 
Sbjct: 4   IVI-CSGGLDSVSLAHM---VAEEHQLTRL----VSFDYGQRH--RKELDYAAAAAKRLG 53

Query: 82  IAHSVVSWKNSKPQTGLMAAAREA-----RYA------------------LISEHAKTIN 118
           + H ++  +         A   +       YA                  +    A    
Sbjct: 54  VPHDIIDMRGIGAALSGSALTDDIDVPDGHYAEETMKVTVVPNRNAIMLTIAYGIAAANG 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              + TA    D          R    +            Y  ++ +  PF+   + DI 
Sbjct: 114 DDAVATAVHGGDH---FIYPDCRPAFTEAFDAMQRAALDGYA-DVRLYTPFVHRTKGDIV 169

Query: 179 SFLLQRNISWCE 190
           +   + N  + E
Sbjct: 170 TAGAKHNTPFAE 181


>gi|168333408|ref|ZP_02691688.1| GMP synthase, large subunit [Epulopiscium sp. 'N.t. morphotype B']
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R+ V     L+A+SGG DS    + L   +          + + VDH  LR+   DEV
Sbjct: 208 AIRAKVGAGKALLALSGGVDSSVAAMILSKAIGK------GLTCVFVDHGLLRKNEGDEV 261

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKP 94
             +     + ++  + +    SK 
Sbjct: 262 EAI--FADKNKLDLNFIRVDASKR 283


>gi|94986647|ref|YP_594580.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Lawsonia intracellularis PHE/MN1-00]
 gi|205816877|sp|Q1MRW7|MNMA_LAWIP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94730896|emb|CAJ54259.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 352

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 44/133 (33%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-------- 72
           ++ VAVSGG+DS   L  L ++     FG     A+              R+        
Sbjct: 2   NVAVAVSGGTDS---LYTLATLREA--FGNHHVFALH------------ARFKEQITNDP 44

Query: 73  ---VSDVCSRLRIAHSVVSWKNSKPQTGLM----AAA------------REARYALISEH 113
              + + C  L +   VV       +  +     A A             + ++ L+ + 
Sbjct: 45  VPALKEQCHNLNVPLHVVDLHKEFNELIIRPFIKAYADGKTPNPCVHCNAKVKFGLLQKK 104

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 105 AQELGANQIATGH 117


>gi|332300167|ref|YP_004442088.1| GMP synthase (glutamine-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332177230|gb|AEE12920.1| GMP synthase (glutamine-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 506

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 27/178 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R-ETAKDEV 70
           +++ V    +++A+SGG DS    + LH  + +      + + I VDH L R   A    
Sbjct: 206 IKAQVGDEQVIMALSGGVDSSVAAVLLHRAIGN------QLTCIFVDHGLMRLGEA---E 256

Query: 71  RYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
           + ++D    L +    V               P+       R+      +E  K   A  
Sbjct: 257 QILADY-KALGLGCIKVDASAKFLGDLAGVRDPEAKRKVIGRDFIEVFEAEAKKLPQARW 315

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +     + D +E++      +   K +        +   ++L +  P     ++++R 
Sbjct: 316 LGQGTIYPDIIESI------NITGKVIKSHHNVGGLPERMHLKLVEPLKHLFKDEVRR 367


>gi|312172139|emb|CBX80396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 369

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 53/194 (27%), Gaps = 39/194 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMK--------NWEEEDGEEYCTAAEDLAD 57

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHAK 115
              VC +L I    +++              E +                  A +   A+
Sbjct: 58  AQAVCDKLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAE 117

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A  I T H     D   ++  +R      ++   L  +    +         P    
Sbjct: 118 DLGADYIATGHYARRQDVDGKSRLLRGLDGNKDQSYFLYTLSHQQIAQS----LFPVGEL 173

Query: 173 RREDIRSFLLQRNI 186
            + ++R    Q  +
Sbjct: 174 AKPEVRRIAEQLEL 187


>gi|294636777|ref|ZP_06715115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda ATCC 23685]
 gi|291089992|gb|EFE22553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Edwardsiella tarda ATCC 23685]
          Length = 376

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 42/152 (27%), Gaps = 40/152 (26%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF S  ES+     S      ++V +SGG DS      L       +   +K        
Sbjct: 1   MFHSDCESLM----SDNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW------ 50

Query: 61  CLRETAKDEVRYVS---------DVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-- 106
                  D   Y S          VC +L I    V++                R  R  
Sbjct: 51  ----EEDDNDEYCSAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLQEYRAGRTP 106

Query: 107 ------------YALISEHAKTINATLIMTAH 126
                        A +   A+ + A  I T H
Sbjct: 107 NPDILCNKEIKFKAFLEFAAEDLGADYIATGH 138


>gi|254294170|ref|YP_003060193.1| GMP synthase [Hirschia baltica ATCC 49814]
 gi|254042701|gb|ACT59496.1| GMP synthase, large subunit [Hirschia baltica ATCC 49814]
          Length = 527

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + LH  + D      + + + V++  LR+   +EV 
Sbjct: 223 IREQVGDKQVICGLSGGVDSSVTALLLHQAIGD------QLTCVFVNNGLLRKNEAEEV- 275

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V+      +I                    P+T      R               A  +
Sbjct: 276 -VAMFTENYKIKLVYADESELFLGELEGQDDPETKRKIIGRLFIDVFQKYADTIEGAEFL 334

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R    
Sbjct: 335 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRILGR 391

Query: 183 QRNIS 187
           +  + 
Sbjct: 392 ELGLP 396


>gi|228473347|ref|ZP_04058101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275249|gb|EEK14047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 397

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 58/192 (30%), Gaps = 30/192 (15%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHC-LRETAKDEVRYVS 74
             ++V +SGG DS      L     +            ++++ + C   E + D    V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLQKQGYEVIGLFMKNWHDDSVTISNECPWLEDSND-ALMV- 59

Query: 75  DVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAKTIN 118
               +L I    V       Q                       RE ++A   + A ++ 
Sbjct: 60  --AEKLGIPFQTVDMSVPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFLDLALSLG 117

Query: 119 ATLIMTAHT-FDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  + T H    +++E       R              +C      L+  +  P    ++
Sbjct: 118 ADYVATGHYCRKEEIEVDGKPIYRLLAGKDTNKDQSYFLCQLSQEQLSRALF-PIGDLQK 176

Query: 175 EDIRSFLLQRNI 186
            ++R+   +  +
Sbjct: 177 NEVRAIAKELGL 188


>gi|159113851|ref|XP_001707151.1| Hypothetical protein GL50803_114336 [Giardia lamblia ATCC 50803]
 gi|157435254|gb|EDO79477.1| hypothetical protein GL50803_114336 [Giardia lamblia ATCC 50803]
          Length = 272

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 4/101 (3%)

Query: 91  NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL 150
               +    +     R   ++          +   H   D LET+ +      +  G+  
Sbjct: 112 QEARKASACSVCSRCRRGTLASFVSAGGYDALALGHHLLDDLETLAITGVHGASFFGLRG 171

Query: 151 SGMCDTILY----DLNLWISRPFLRCRREDIRSFLLQRNIS 187
              C+ + +       + I RP L     +I   +L   +S
Sbjct: 172 YYNCEVMDFASRAKHRVCILRPMLSVHVSEISRVVLHNGLS 212


>gi|298369001|ref|ZP_06980319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298283004|gb|EFI24491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 367

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 52/197 (26%), Gaps = 42/197 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRETAKDE-VRYVS- 74
           P +I+V +SGG DS      L                    H   ++    D+   Y S 
Sbjct: 7   PQNIIVGLSGGVDSSVTAALLKQQGHRV-------------HGVFMQNWEDDDNDEYCSI 53

Query: 75  --------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALI 110
                    V   L I   +V++                 A R          E ++   
Sbjct: 54  KQDSFDAIAVADILGIDIDIVNFAAQYKDKVFAYFLKEYGAGRTPNPDVLCNAEIKFKCF 113

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            ++A    A  I T H    ++        +           +     + L   I  P  
Sbjct: 114 LDYALEQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLQPFQLERAIF-PLG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    +  + 
Sbjct: 173 GLEKPEVRRLAAEFKLP 189


>gi|315660070|ref|ZP_07912928.1| GMP synthase [Staphylococcus lugdunensis M23590]
 gi|315494971|gb|EFU83308.1| GMP synthase [Staphylococcus lugdunensis M23590]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D   
Sbjct: 212 IRKRVGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ +          S P+        E  Y    E AK  +   
Sbjct: 263 MVMEQFGEGFDMNIIRVNAQERFMNKLKGVSDPEQKRKIIGNEFVYVFDDEAAKLTDVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|293189088|ref|ZP_06607814.1| GMP synthase [Actinomyces odontolyticus F0309]
 gi|292821933|gb|EFF80866.1| GMP synthase [Actinomyces odontolyticus F0309]
          Length = 518

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 35/195 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++ A+SGG DS      +H  + D      + +   +DH  LR   +++V 
Sbjct: 207 IREQVGDAQVICALSGGVDSSVAAALVHRAVGD------QLTCFFIDHGLLRAGEREQVE 260

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------ARE-------ARYALISEH 113
              D    + I   V++   S+     +A             RE       A+  +I E 
Sbjct: 261 N--DYARGMGI--RVITCDESERFLSALAGVTEPEAKRKIIGREFIRSFEAAQKQVIEEV 316

Query: 114 AKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                    +   T   D +E+             +        +  D+   +  P    
Sbjct: 317 GAAGGEVKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDMTFELVEPLRTL 371

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  + 
Sbjct: 372 FKDEVRAVGRELGLP 386


>gi|289551759|ref|YP_003472663.1| glutamine-hydrolyzing GMP synthase [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181290|gb|ADC88535.1| glutamine-hydrolyzing GMP synthase [Staphylococcus lugdunensis
           HKU09-01]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D   
Sbjct: 212 IRKRVGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ +          S P+        E  Y    E AK  +   
Sbjct: 263 MVMEQFGEGFDMNIIRVNAQERFMNKLKGVSDPEQKRKIIGNEFVYVFDDEAAKLTDVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|197104258|ref|YP_002129635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phenylobacterium zucineum HLK1]
 gi|196477678|gb|ACG77206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phenylobacterium zucineum HLK1]
          Length = 371

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 47/216 (21%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRET----AKDE 69
           L     I+ A+SGG DS      L     D     ++      DH   +++     A  +
Sbjct: 3   LPAGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLY----DHGAAVQKKGACCAGQD 58

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEH 113
           +         + I H V+ +++   Q  +   A                   ++  + + 
Sbjct: 59  IHDARTAAEGIGIPHYVLDYESRFKQQVIEDFADAYLRGETPIPCIRCNQTVKFRDLLDV 118

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNL 163
           A+ + A  + T H             +R+   +G  L    D              +   
Sbjct: 119 ARDLGAQAMATGH-----------YVRREAGAEGPELHRAADPARDQSYFLFATTAEQLD 167

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           ++  P     +  +R+   +  ++  + P + D  F
Sbjct: 168 YLRFPLGAMPKPAVRAAAAELGLAVADKPDSQDICF 203


>gi|168183034|ref|ZP_02617698.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Bf]
 gi|182673749|gb|EDT85710.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum Bf]
          Length = 266

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + VA SGG DS  LL      L D +        I+V   L         +   ++ +
Sbjct: 16  GSVAVAFSGGVDSTLLLKVAKEALGDNAIS------ITV---LSPYIPKWEIKEAKELAN 66

Query: 79  RLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDD 130
            + I    +     +  +          +  + S+    AK      I+     DD
Sbjct: 67  HIGIKSYFLEVPMLEEIRFNPEDRCYICKKGVFSKIKELAKEKGVKYIVDGTNLDD 122


>gi|145336613|ref|NP_175542.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis thaliana]
 gi|332194528|gb|AEE32649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arabidopsis thaliana]
          Length = 497

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 68/203 (33%), Gaps = 44/203 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KD 68
            P  + V +SGG DS   L  LH+     +   +K          +E           +D
Sbjct: 80  KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIW-------FQEGFENFWNQCPWED 132

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISE 112
           +++Y   VC ++ +   VV   +    +  + ++   R  R             +    +
Sbjct: 133 DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 192

Query: 113 HAKTINATLIMTAHTFD------DQ--LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
               +    + + H         DQ    +V   SQ    ++   LS +  T L      
Sbjct: 193 AISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKR---- 248

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P    +++++R    Q ++ 
Sbjct: 249 LLFPLGCVKKDEVRKLATQFDLP 271


>gi|4836940|gb|AAD30642.1|AC006085_15 Unknown protein [Arabidopsis thaliana]
 gi|119935887|gb|ABM06024.1| At1g51310 [Arabidopsis thaliana]
          Length = 421

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 68/203 (33%), Gaps = 44/203 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KD 68
            P  + V +SGG DS   L  LH+     +   +K          +E           +D
Sbjct: 4   KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIW-------FQEGFENFWNQCPWED 56

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISE 112
           +++Y   VC ++ +   VV   +    +  + ++   R  R             +    +
Sbjct: 57  DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 116

Query: 113 HAKTINATLIMTAHTFD------DQ--LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
               +    + + H         DQ    +V   SQ    ++   LS +  T L      
Sbjct: 117 AISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKR---- 172

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P    +++++R    Q ++ 
Sbjct: 173 LLFPLGCVKKDEVRKLATQFDLP 195


>gi|70727581|ref|YP_254497.1| GMP synthase [Staphylococcus haemolyticus JCSC1435]
 gi|91206831|sp|Q4L386|GUAA_STAHJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|68448307|dbj|BAE05891.1| GMP synthase [Staphylococcus haemolyticus JCSC1435]
          Length = 513

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D   
Sbjct: 212 IRKRVGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V+ +          S P+        E  Y    E AK  +   
Sbjct: 263 MVMEQFGEGFDMNIIRVNAQERFMDKLKGVSDPEQKRKIIGNEFVYVFDDEAAKLTDVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|326571721|gb|EGE21734.1| GMP synthase [Moraxella catarrhalis BC8]
 gi|326574365|gb|EGE24308.1| GMP synthase [Moraxella catarrhalis CO72]
          Length = 519

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 215 LKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLNEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+   +       +A             RE       E  K     
Sbjct: 269 --QMFAENMGI--RVIRADSEARFLNALAGVSDPEAKRKIIGREFIEVFSEEARKLDGVK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P L   ++++R  
Sbjct: 325 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLLDLFKDEVRKL 381

Query: 181 LLQRNISW 188
            +   I  
Sbjct: 382 GVALGIPH 389


>gi|310779706|ref|YP_003968038.1| GMP synthase (glutamine-hydrolyzing) [Ilyobacter polytropus DSM
           2926]
 gi|309749029|gb|ADO83690.1| GMP synthase (glutamine-hydrolyzing) [Ilyobacter polytropus DSM
           2926]
          Length = 512

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 25/198 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IES    +R  V    +++A+SGG DS    + +H  + D      + S   VD  L R 
Sbjct: 202 IESTVEEIREKVGDRKVILALSGGVDSSVAAVLIHKAIGD------QLSCFFVDTGLMR- 254

Query: 65  TAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHA 114
             KDE + V         I    +  ++         S P+        E  Y    +  
Sbjct: 255 --KDEAKKVMETYGEHYNINIECIDAEDRFLSKLAGVSDPEEKRKIIGNEFIYIFEDQKK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +A  +     + D +E+  ++      +    + G+ + + ++    +  P     +
Sbjct: 313 RFKDADFLAQGTIYPDVIESQSVKGPSATIKSHHNVGGLPEEMKFE----LLEPLRELFK 368

Query: 175 EDIRSFLLQRNIS-WCED 191
           +++R    +  I     D
Sbjct: 369 DEVRQVGRELGIPDHMID 386


>gi|254423738|ref|ZP_05037456.1| conserved hypothetical protein TIGR00268 [Synechococcus sp. PCC
           7335]
 gi|196191227|gb|EDX86191.1| conserved hypothetical protein TIGR00268 [Synechococcus sp. PCC
           7335]
          Length = 269

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 37/180 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLR 81
           L+A SGG DS  +      VL D++       A++ +     +   ++        ++L 
Sbjct: 19  LIAYSGGIDSTLVAKVAWDVLGDQAL------AVTAN---SPSLMPEDFEDAKTQAAQLG 69

Query: 82  IAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           IAH VV       +             +   +  +   A  +    ++     DD     
Sbjct: 70  IAHRVVETHEMDNEQYTSNPVNRCYFCKSELHDTLRPLADELGYDYVVDGLNADD----- 124

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDPS 193
                         L      I       +  P   +   + ++R    Q  + W + PS
Sbjct: 125 --------------LLDYRPGIAAAKERGVRSPLAEVGITKLEVREISRQLGLPWWDKPS 170


>gi|153809107|ref|ZP_01961775.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185]
 gi|149128440|gb|EDM19659.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185]
          Length = 361

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 28/123 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++ ++
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--RGYEIVGVTMRVW----------GDEPQDARELAAQ 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  +    + 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLGCAWVA 113

Query: 124 TAH 126
           T H
Sbjct: 114 TGH 116


>gi|303247271|ref|ZP_07333545.1| GMP synthase, large subunit [Desulfovibrio fructosovorans JJ]
 gi|302491430|gb|EFL51318.1| GMP synthase, large subunit [Desulfovibrio fructosovorans JJ]
          Length = 516

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 24/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    ++  V    ++ A+SGG DS  + + LH  +  +         I VD+  L
Sbjct: 204 SFVETELAALKKQVGDDEVVCALSGGVDSTVVAVMLHKAIGKK------LHCIFVDNGLL 257

Query: 63  R-ETAKDEVRYVSDV---------CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
           R    ++   Y+ +           S+L +          K +  +     E      +E
Sbjct: 258 RLGEGEEVAAYLREHFDLNLYYIKASKLFLDRLAGVTDPEKKRKIIGTTFIEV---FEAE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK   A  +     + D +E+   R      +    + G+ +     + L +  P    
Sbjct: 315 AAKLPKAKYLAQGTLYPDVIESESFRGPSAVIKSHHNVGGLPE----HMKLQLIEPLREL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 371 FKDEVRKVAAEIGLP 385


>gi|163747144|ref|ZP_02154500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanibulbus indolifex HEL-45]
 gi|161379705|gb|EDQ04118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanibulbus indolifex HEL-45]
          Length = 380

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 70/234 (29%), Gaps = 56/234 (23%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           P+ S+ F          ++VA+SGG DS  +   L     D     ++      DH    
Sbjct: 8   PLNSLGFA--KAPADTRVVVAMSGGVDSSVVAAMLADEGYDVVGVTLQLY----DHG--A 59

Query: 65  T--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-------------- 102
                    A  +++    V   +   H V+ ++N      +   A              
Sbjct: 60  ALAKKGACCAGVDIQDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIR 119

Query: 103 --REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                ++  + E AK + A  + T H             QR   E G  L    D    D
Sbjct: 120 CNERVKFKDLLETAKDLEADCMATGH-----------YIQRKMGENGPELHAAADGN-RD 167

Query: 161 LNLWISR-----------PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            + ++             P      ++D R+   +  +   + P + D  F   
Sbjct: 168 QSYFLFSTTEEQLDYLRFPLGHLPSKDDTRALAAKYGLVVADKPDSQDICFVPN 221


>gi|312875894|ref|ZP_07735884.1| GMP synthase, large subunit [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797375|gb|EFR13714.1| GMP synthase, large subunit [Caldicellulosiruptor lactoaceticus 6A]
          Length = 511

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++S+V    ++ A+SGG DS    + +H  +            I VDH  L
Sbjct: 200 SFIEEKVSEIKSIVGSQKVVCALSGGVDSSVAAVLVHKAIGK------NLYCIFVDHGLL 253

Query: 63  RETAKDEV 70
           R+   DEV
Sbjct: 254 RKGEADEV 261


>gi|312793609|ref|YP_004026532.1| gmp synthase, large subunit [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180749|gb|ADQ40919.1| GMP synthase, large subunit [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 511

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++S+V    ++ A+SGG DS    + +H  +            I VDH  L
Sbjct: 200 SFIEEKVSEIKSIVGSQKVVCALSGGVDSSVAAVLVHKAIGK------NLYCIFVDHGLL 253

Query: 63  RETAKDEV 70
           R+   DEV
Sbjct: 254 RKGEADEV 261


>gi|312622559|ref|YP_004024172.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203026|gb|ADQ46353.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 276

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 48/200 (24%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              E ++ +++SL     + +A SGG DS  L+   + VL DR        A++      
Sbjct: 11  EKYEKLKNYIKSL---GSLAIAYSGGVDSTFLVKVAYDVLGDR------VIAVT------ 55

Query: 64  ETAK--------DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-- 113
            T+         D + ++  + ++  I       +        +      +  L  +   
Sbjct: 56  ATSSTYPKRELNDAITFIKQIGAK-HIVIESEELEIEGFNKNPVDRCYYCKKELFEKIWK 114

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--L 170
            AK      +     FDD      +   R       G+   C+       L +  P    
Sbjct: 115 VAKAHGIEYVADGSNFDD------LNDFRP------GMKAACE-------LNVVSPLKVA 155

Query: 171 RCRREDIRSFLLQRNISWCE 190
              +EDIR    +  +   +
Sbjct: 156 GLTKEDIRKLSKELGLPTWD 175


>gi|312127735|ref|YP_003992609.1| PP-loop domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777754|gb|ADQ07240.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 278

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 48/200 (24%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              E ++ +++SL     + +A SGG DS  L+   + VL DR        A++      
Sbjct: 11  EKYEKLKNYIKSL---GSLAIAYSGGVDSTFLVKVAYDVLGDR------VIAVT------ 55

Query: 64  ETAK--------DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-- 113
            T+         D + ++  + ++  I       +        +      +  L  +   
Sbjct: 56  ATSSTYPKRELNDAITFIKQIGAK-HIVIESEELEIEGFNKNPVDRCYYCKKELFEKIWK 114

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--L 170
            AK      +     FDD      +   R       G+   C+       L +  P    
Sbjct: 115 VAKAHGIEYVADGSNFDD------LNDFRP------GMKAACE-------LNVVSPLKVA 155

Query: 171 RCRREDIRSFLLQRNISWCE 190
              +EDIR    +  +   +
Sbjct: 156 GLTKEDIRKLSKELGLPTWD 175


>gi|229828236|ref|ZP_04454305.1| hypothetical protein GCWU000342_00293 [Shuttleworthia satelles DSM
           14600]
 gi|229792830|gb|EEP28944.1| hypothetical protein GCWU000342_00293 [Shuttleworthia satelles DSM
           14600]
          Length = 514

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 20/185 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L  +SGG DS    + L   +        + + + VDH  LR+   D+V 
Sbjct: 209 LRRKIGDGKVLCGLSGGVDSSVAAVLLSKAIGR------QLTCVFVDHGLLRKDEGDQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATLI 122
            V        +    V+ K+   +   G+    R+ +        +    AK I     +
Sbjct: 263 AVFGPEGPYELNFVRVNAKDRFYEKLAGVEEPERKRKIIGEEFIRVFEAEAKKIGRVDYL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +    + D +E+     +    +    + G+ D + +     I  P     ++++R   L
Sbjct: 323 VQGTIYPDVVESGL-GGESATIKSHHNVGGLPDYVDFK---EIVEPLRDLFKDEVRKVGL 378

Query: 183 QRNIS 187
              I 
Sbjct: 379 HLGIP 383


>gi|254523199|ref|ZP_05135254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas sp. SKA14]
 gi|219720790|gb|EED39315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas sp. SKA14]
          Length = 380

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 54/199 (27%), Gaps = 51/199 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            ++V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L I           W+          AA           RE ++    + 
Sbjct: 52  RRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H         Q   + +R      ++   L  +    L         P
Sbjct: 112 ARELGAERIATGHYARVTQRGGQ--WLLLRGADRSKDQSYFLHQLGQQQLAAT----LFP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + D+R       + 
Sbjct: 166 IGDLEKSDLRRIARDVGLP 184


>gi|212634687|ref|YP_002311212.1| tRNA-specific 2-thiouridylase MnmA [Shewanella piezotolerans WP3]
 gi|226704776|sp|B8CLH4|MNMA_SHEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|212556171|gb|ACJ28625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella piezotolerans WP3]
          Length = 371

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 54/195 (27%), Gaps = 39/195 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A D+++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMK--------NWEEDDTDEYCAAADDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++ +           A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + ++A  I   H     D    +  +R      ++   L  +    +         P   
Sbjct: 122 EILDADYIAMGHYVRRRDIDGTSQMLRGVDGNKDQSYFLYTLSHEQVARS----LFPVGE 177

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 178 LEKSEVRDIAKEMGL 192


>gi|297618762|ref|YP_003706867.1| N-acetyl sugar amidotransferase [Methanococcus voltae A3]
 gi|297377739|gb|ADI35894.1| N-acetyl sugar amidotransferase [Methanococcus voltae A3]
          Length = 381

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 20/116 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG+DS  +   +  +        ++  A+ VD+     +   V+ + +  ++L I
Sbjct: 73  IIGVSGGADSTYVAYLVKKL-------GLRPLAVHVDNGW--NSDLSVKNIENTLNKLGI 123

Query: 83  AH--SVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                V+ W                 L      A YA++ + A   N   I++ + 
Sbjct: 124 ELYTHVLDWDEFRDLQLSYIKSSTPDLEVPTDHAIYAVMFKIASKNNIKYILSGYN 179


>gi|313633851|gb|EFS00574.1| GMP synthase (glutamine-hydrolyzing) [Listeria seeligeri FSL
           N1-067]
          Length = 518

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +       + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|284801428|ref|YP_003413293.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria monocytogenes 08-5578]
 gi|284994570|ref|YP_003416338.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria monocytogenes 08-5923]
 gi|284056990|gb|ADB67931.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria monocytogenes 08-5578]
 gi|284060037|gb|ADB70976.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria monocytogenes 08-5923]
          Length = 518

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +       + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|225025729|ref|ZP_03714921.1| hypothetical protein EIKCOROL_02633 [Eikenella corrodens ATCC
           23834]
 gi|224941510|gb|EEG22719.1| hypothetical protein EIKCOROL_02633 [Eikenella corrodens ATCC
           23834]
          Length = 522

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR     E  
Sbjct: 212 IREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN---EAE 262

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V       L +   V+    S+           P+        E      +E  K  NA
Sbjct: 263 NVMKMFADNLGV--RVIHVDASEQFMAKLAGVTDPEQKRKIIGAEFIEVFDAEEKKLANA 320

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++ L +  P     ++++R 
Sbjct: 321 KWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRE 377

Query: 180 FLLQRNIS 187
             +   + 
Sbjct: 378 LGVALGLP 385


>gi|224502590|ref|ZP_03670897.1| GMP synthase [Listeria monocytogenes FSL R2-561]
          Length = 514

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +       + I       +        S P+        E  Y    E  K      
Sbjct: 264 QVMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|16803136|ref|NP_464621.1| GMP synthase [Listeria monocytogenes EGD-e]
 gi|24211754|sp|Q8Y822|GUAA_LISMO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|16410498|emb|CAC99174.1| guaA [Listeria monocytogenes EGD-e]
          Length = 518

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +       + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMETLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|293571201|ref|ZP_06682236.1| GMP synthase [Enterococcus faecium E980]
 gi|291608712|gb|EFF37999.1| GMP synthase [Enterococcus faecium E980]
          Length = 521

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 217 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTSIFVDHGLLRKG---EAE 267

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  ++         S P+        E  Y      ++ A    
Sbjct: 268 QVMESLGGKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 328 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|260583885|ref|ZP_05851633.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella elegans ATCC 700633]
 gi|260158511|gb|EEW93579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Granulicatella elegans ATCC 700633]
          Length = 374

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 65/194 (33%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++ + V
Sbjct: 7   RVIVGMSGGVDSSVTALLLKQAGYDVIGIFMKNWDDTDENGVCT--------ATEDYKDV 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAKTI 117
           + V  ++ I +  V+++            +E R                +    E+A  +
Sbjct: 59  AAVAEQIGIPYYSVNFEKEYWDRVFEYFLKEYRLGRTPNPDVMCNKEVKFQAFLEYALQL 118

Query: 118 NATLIMTAHTFD-DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  +   H    ++ E   +R  R      ++   LS +    L         P     
Sbjct: 119 GADYVAMGHYARVEKDENGVVRLLRGVDNNKDQTYFLSQLNQQQLSKAMF----PIGHLE 174

Query: 174 REDIRSFLLQRNIS 187
           ++++R    + +++
Sbjct: 175 KKEVRKIAEEFDLA 188


>gi|260462497|ref|ZP_05810704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
 gi|259031693|gb|EEW32962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium opportunistum WSM2075]
          Length = 396

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 58/202 (28%), Gaps = 45/202 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                I+VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V   L I H V+ ++    +  +   A                   ++A +   A
Sbjct: 66  DDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFADLLATA 125

Query: 115 KTINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           K + A  + T H                    R      ++   L       +     ++
Sbjct: 126 KELGADALATGHYIRSGANGAHR------ALYRPVDADRDQSYFLFATTQAQI----DYL 175

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     +  +R+   +  ++
Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLT 197


>gi|257885611|ref|ZP_05665264.1| GMP synthase [Enterococcus faecium 1,231,501]
 gi|257821467|gb|EEV48597.1| GMP synthase [Enterococcus faecium 1,231,501]
          Length = 521

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 217 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTSIFVDHGLLRKG---EAE 267

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  ++         S P+        E  Y      ++ A    
Sbjct: 268 QVMESLGGKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 328 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|257878703|ref|ZP_05658356.1| GMP synthase [Enterococcus faecium 1,230,933]
 gi|257888045|ref|ZP_05667698.1| GMP synthase [Enterococcus faecium 1,141,733]
 gi|257893150|ref|ZP_05672803.1| GMP synthase [Enterococcus faecium 1,231,408]
 gi|257896336|ref|ZP_05675989.1| GMP synthase [Enterococcus faecium Com12]
 gi|257899311|ref|ZP_05678964.1| GMP synthase [Enterococcus faecium Com15]
 gi|261206969|ref|ZP_05921658.1| GMP synthase [Enterococcus faecium TC 6]
 gi|289565394|ref|ZP_06445844.1| GMP synthase [Enterococcus faecium D344SRF]
 gi|293379422|ref|ZP_06625566.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecium PC4.1]
 gi|293556575|ref|ZP_06675143.1| GMP synthase [Enterococcus faecium E1039]
 gi|294615416|ref|ZP_06695289.1| GMP synthase [Enterococcus faecium E1636]
 gi|294618343|ref|ZP_06697924.1| GMP synthase [Enterococcus faecium E1679]
 gi|257812931|gb|EEV41689.1| GMP synthase [Enterococcus faecium 1,230,933]
 gi|257824099|gb|EEV51031.1| GMP synthase [Enterococcus faecium 1,141,733]
 gi|257829529|gb|EEV56136.1| GMP synthase [Enterococcus faecium 1,231,408]
 gi|257832901|gb|EEV59322.1| GMP synthase [Enterococcus faecium Com12]
 gi|257837223|gb|EEV62297.1| GMP synthase [Enterococcus faecium Com15]
 gi|260078597|gb|EEW66299.1| GMP synthase [Enterococcus faecium TC 6]
 gi|289162884|gb|EFD10734.1| GMP synthase [Enterococcus faecium D344SRF]
 gi|291591790|gb|EFF23426.1| GMP synthase [Enterococcus faecium E1636]
 gi|291595437|gb|EFF26749.1| GMP synthase [Enterococcus faecium E1679]
 gi|291601251|gb|EFF31535.1| GMP synthase [Enterococcus faecium E1039]
 gi|292641945|gb|EFF60111.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Enterococcus faecium PC4.1]
          Length = 521

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 217 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTSIFVDHGLLRKG---EAE 267

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  ++         S P+        E  Y      ++ A    
Sbjct: 268 QVMESLGGKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 328 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|227550696|ref|ZP_03980745.1| GMP synthase (glutamine-hydrolyzing) [Enterococcus faecium TX1330]
 gi|314937585|ref|ZP_07844911.1| GMP synthase protein [Enterococcus faecium TX0133a04]
 gi|314942916|ref|ZP_07849729.1| GMP synthase protein [Enterococcus faecium TX0133C]
 gi|314950864|ref|ZP_07853933.1| GMP synthase protein [Enterococcus faecium TX0133A]
 gi|314991487|ref|ZP_07856964.1| GMP synthase protein [Enterococcus faecium TX0133B]
 gi|314994993|ref|ZP_07860113.1| GMP synthase protein [Enterococcus faecium TX0133a01]
 gi|227180157|gb|EEI61129.1| GMP synthase (glutamine-hydrolyzing) [Enterococcus faecium TX1330]
 gi|313590719|gb|EFR69564.1| GMP synthase protein [Enterococcus faecium TX0133a01]
 gi|313593967|gb|EFR72812.1| GMP synthase protein [Enterococcus faecium TX0133B]
 gi|313596873|gb|EFR75718.1| GMP synthase protein [Enterococcus faecium TX0133A]
 gi|313598388|gb|EFR77233.1| GMP synthase protein [Enterococcus faecium TX0133C]
 gi|313642962|gb|EFS07542.1| GMP synthase protein [Enterococcus faecium TX0133a04]
          Length = 515

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E  
Sbjct: 211 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTSIFVDHGLLRKG---EAE 261

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  ++         S P+        E  Y      ++ A    
Sbjct: 262 QVMESLGGKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEG 321

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 322 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 375

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 376 ELGTQLGMPDSIVWR 390


>gi|20089138|ref|NP_615213.1| hypothetical protein MA0240 [Methanosarcina acetivorans C2A]
 gi|19914006|gb|AAM03693.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 281

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 43/205 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  + I ++R  +++       ++A SGG DS  L       L +++       A+++D 
Sbjct: 1   MDAAKIGTIRKAIKARESA---VIAFSGGVDSSTLAALAFEELGEKAL------AVTID- 50

Query: 61  CLRETA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALI 110
                +    + ++   +     + I H ++ +        S          ++A    +
Sbjct: 51  -----SPLFPRQQLETAAQTACEIGIQHKILPFSLTSVPYFSANTINRCYFCKKALLETL 105

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E A+     +++                      KG    G     + +    I  PF+
Sbjct: 106 VEFAEKAGYNVVLEGTNA--------------SEIKGENRPGY--RAIEEAGDKIFSPFV 149

Query: 171 --RCRREDIRSFLLQRNISWCEDPS 193
                +E+IR     R +S    PS
Sbjct: 150 EFNVTKEEIREIASNRALSVASKPS 174


>gi|213962751|ref|ZP_03391012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sputigena Capno]
 gi|213954746|gb|EEB66067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sputigena Capno]
          Length = 397

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 59/196 (30%), Gaps = 38/196 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS      L     +     +K           + +    DE  ++ D 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMK--------NWHDDSVTISDECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V                               RE ++ +  + A
Sbjct: 54  NDALLVAEKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLA 113

Query: 115 KTINATLIMTAHT-FDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            ++ A  + T H    +++E       R      E       +C      L+  +  P  
Sbjct: 114 LSLGADYVATGHYCRKEEIEINGKKIYRLLSGKDENKDQSYFLCQLSQEQLSKALF-PIG 172

Query: 171 RCRREDIRSFLLQRNI 186
             ++ ++R+    +++
Sbjct: 173 ELQKSEVRAIAKAQDL 188


>gi|189460122|ref|ZP_03008907.1| hypothetical protein BACCOP_00758 [Bacteroides coprocola DSM 17136]
 gi|189433164|gb|EDV02149.1| hypothetical protein BACCOP_00758 [Bacteroides coprocola DSM 17136]
          Length = 517

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 27/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIETTVAELKQQLGNDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAK 115
           R+     V +  D  C  L +     S K      G+    R+ +        +  E A 
Sbjct: 252 RKNEFKNVLH--DYECLGLNVIGVDASEKFFSELAGVTEPERKRKIIGKGFIDVFDEEAH 309

Query: 116 TI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRC 172
            I +   +     + D +E++        +  G  +        +   +NL +  P    
Sbjct: 310 KIKDVKWLAQGTIYPDCIESL--------SITGTVIKSHHNVGGLPEKMNLKLCEPLRLL 361

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 362 FKDEVRRVGRELGMP 376


>gi|226322606|ref|ZP_03798124.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758]
 gi|225208943|gb|EEG91297.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758]
          Length = 359

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 61/201 (30%), Gaps = 44/201 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRET 65
               ++V +SGG DS      L                 + S  + +         L   
Sbjct: 2   AKKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEESKIQEENGGCC---GLS-- 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYAL 109
           A D+ R V    +++ I + V+++K    +                    A  R  ++  
Sbjct: 57  AVDDARKV---AAQIGIPYYVMNFKKDFQEKVIDYFVDEYLHGRTPNPCIACNRYVKWES 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-- 167
           +   +  I A  I T H    ++E   + + R         S      LY+L     R  
Sbjct: 114 LLTRSMEIGADYIATGHYA--RVEQ--LPNGRYAIRHSATWSKDQTYALYNLTQDQLRRT 169

Query: 168 --PFLRCRREDIRSFLLQRNI 186
             P     ++ IR    +  +
Sbjct: 170 LMPVGEYEKDQIREIAKEIGL 190


>gi|329889248|ref|ZP_08267591.1| GMP synthase glutamine-hydrolyzing [Brevundimonas diminuta ATCC
           11568]
 gi|328844549|gb|EGF94113.1| GMP synthase glutamine-hydrolyzing [Brevundimonas diminuta ATCC
           11568]
          Length = 520

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS    + +H  + D      + + + VD   LR   KDE +
Sbjct: 216 IREQVGDAKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDTGLLR---KDEAK 266

Query: 72  YVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V+++      I    V             S P+T      R        E  K   A  
Sbjct: 267 QVTELFREHYNIPLVHVDASKEFLGELAGISDPETKRKTIGRVFIEVFDREAVKIEGAAF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S        +        +   + L +  P     ++++R+  
Sbjct: 327 LAQGTLYPDVIESV---SPTGGPSHVIKSHHNVGGLPDFMKLKLVEPLRELFKDEVRALG 383

Query: 182 LQRNIS 187
            +  ++
Sbjct: 384 RELGLT 389


>gi|313681611|ref|YP_004059349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154471|gb|ADR33149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 339

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 37/185 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLRETAKDEVRYVSD 75
              +L+ +SGG DS    + L     D     +K       H      E  +   +  +D
Sbjct: 2   GKKVLIGMSGGVDSTVSTLLLKEQGYDVEGVYMKL------HSKPGYHEIHQARAQRAAD 55

Query: 76  VCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINA 119
                 +   ++  +                        A   R  ++  +  +A +I A
Sbjct: 56  FA---GVKLHILDLQEEFNAKVFTPFIETYKEGKTPNPCALCNRNIKFGAMVAYADSIGA 112

Query: 120 TLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + T H    D Q     +++  D  ++   L  +   ++      +  P     + DI
Sbjct: 113 DYVATGHYIRHDGQ---YLLQAHDDTKDQSYFLFYIDPALVPR----LLFPLGERHKSDI 165

Query: 178 RSFLL 182
           +++  
Sbjct: 166 KAYAA 170


>gi|295134761|ref|YP_003585437.1| tRNA methyl transferase [Zunongwangia profunda SM-A87]
 gi|294982776|gb|ADF53241.1| tRNA methyl transferase [Zunongwangia profunda SM-A87]
          Length = 395

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 33/132 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS      L     +     +K           + +    DE  ++ D 
Sbjct: 2   KKVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMK--------NWHDDSVTISDECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V       +                       RE ++ +  + A
Sbjct: 54  NDAMIVAEKLGIPFQTVDLSEQYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFMKIA 113

Query: 115 KTINATLIMTAH 126
            ++ A  + T H
Sbjct: 114 LSLGADYVATGH 125


>gi|241762674|ref|ZP_04760743.1| GMP synthase, small subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241372724|gb|EER62451.1| GMP synthase, small subunit [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 341

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 11/81 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R+    E  
Sbjct: 222 IRKQVGDGRVICGLSGGVDSSVTAVLVHEAIGD------QLTCVFVDHGLMRQG---EAE 272

Query: 72  YVSDVCSRL-RIAHSVVSWKN 91
            V  +      I    V+ ++
Sbjct: 273 QVVSLFREHYGIKLVHVNAED 293


>gi|205822022|sp|A8H5M1|MNMA_SHEPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 39/195 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A D+++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMK--------NWEEDDTDEYCAAADDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++ +           A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + ++A  I   H     D    +  +R      ++   L     T+ Y+       P   
Sbjct: 122 EILDADYIAMGHYVRRRDIDGTSQMLRGVDGNKDQSYFLY----TLGYEQVARSLFPVGE 177

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 178 LDKSEVREIAKEMGL 192


>gi|157962359|ref|YP_001502393.1| tRNA-specific 2-thiouridylase MnmA [Shewanella pealeana ATCC
           700345]
 gi|157847359|gb|ABV87858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella pealeana ATCC 700345]
          Length = 398

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 39/195 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A D+++
Sbjct: 37  GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMK--------NWEEDDTDEYCAAADDLK 88

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++ +           A  +  R               A +    
Sbjct: 89  DAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 148

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           + ++A  I   H     D    +  +R      ++   L     T+ Y+       P   
Sbjct: 149 EILDADYIAMGHYVRRRDIDGTSQMLRGVDGNKDQSYFLY----TLGYEQVARSLFPVGE 204

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 205 LDKSEVREIAKEMGL 219


>gi|114569735|ref|YP_756415.1| GMP synthase [Maricaulis maris MCS10]
 gi|114340197|gb|ABI65477.1| GMP synthase (glutamine-hydrolyzing) [Maricaulis maris MCS10]
          Length = 519

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L  +SGG DS    + LH  + D      +   + VD  L R+   DEV 
Sbjct: 215 IREQVGDKRVLCGLSGGVDSSVAAVLLHEAIGD------QLVCVFVDTGLMRQGEADEV- 267

Query: 72  YVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALI-----SEHAKTINATLI 122
            V+       I       ++    +          R+   +L       +  +   A  +
Sbjct: 268 -VTLFREHYNIPLVHAEAEDLFLTALKGVDDPEKKRKIIGSLFIDVFDEKAKEAGGADFL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V            +        +   + + +  P     ++++R+   
Sbjct: 327 AQGTLYPDVIESVSFD---GGPSVTIKSHHNVGGLPARMKMKLVEPLRELFKDEVRALGR 383

Query: 183 QRNIS 187
           +  + 
Sbjct: 384 ELGLP 388


>gi|313887530|ref|ZP_07821213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846408|gb|EFR33786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 353

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 66/199 (33%), Gaps = 42/199 (21%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----VR 71
           +     +++ +SGG DS    I L              +A+     +R  A+D+     R
Sbjct: 1   MQEKKKVILGMSGGVDSSVSAILLKE-------AGYDVTAVF----MRNWAEDDGMCTAR 49

Query: 72  Y----VSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALIS 111
                V  VCS+L I +  V+++                  R          E ++    
Sbjct: 50  EDYIDVVSVCSQLGIKYFTVNFEKEYRDRVFSYFLSEYKKGRTPNPDVMCNTEIKFKAFL 109

Query: 112 EHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           ++A   +A  I   H   T     +T  ++   +  ++   LS +    L         P
Sbjct: 110 DYAMDFDADYIAMGHYARTKKVHGKTYLLKGLDNNKDQSYFLSRVKSEALEKT----LFP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R    +  +S
Sbjct: 166 VGDLTKDEVRRIAEKYELS 184


>gi|254670895|emb|CBA07439.1| GMP synthase [Neisseria meningitidis alpha153]
 gi|325204871|gb|ADZ00325.1| GMP synthase [Neisseria meningitidis M01-240355]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIVGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|62320516|dbj|BAD95081.1| hypothetical protein [Arabidopsis thaliana]
          Length = 497

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 68/203 (33%), Gaps = 44/203 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KD 68
            P  + V +SGG DS   L  LH+     +   +K          +E           +D
Sbjct: 80  KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIW-------FQEGFENFWNQCPWED 132

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISE 112
           +++Y   VC ++ +   VV   +    +  + ++   R  R             +    +
Sbjct: 133 DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 192

Query: 113 HAKTINATLIMTAHTFD------DQ--LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
               +    + + H         DQ    +V   SQ    ++   LS +  T L      
Sbjct: 193 AISDMEYDYVGSGHYARVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKR---- 248

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P    +++++R    Q ++ 
Sbjct: 249 LLFPLGCVKKDEVRKLATQFDLP 271


>gi|325915390|ref|ZP_08177707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538437|gb|EGD10116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 378

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 53/199 (26%), Gaps = 51/199 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            I+V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L I           W           AA           RE ++    + 
Sbjct: 52  RRDAVAVCGVLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAHTFDDQL-----ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H    Q+         +R      ++   L  +  T L         P
Sbjct: 112 AQALGAERIATGHYA--QVAYRGGRWRLLRGADRGKDQSYFLHQLGQTQLAAT----VFP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +  +R       + 
Sbjct: 166 IGDLEKSTLRRIAQDAGLP 184


>gi|294787843|ref|ZP_06753087.1| GMP synthase (glutamine-hydrolyzing) [Simonsiella muelleri ATCC
           29453]
 gi|294484136|gb|EFG31819.1| GMP synthase (glutamine-hydrolyzing) [Simonsiella muelleri ATCC
           29453]
          Length = 520

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 64/188 (34%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR   A + +
Sbjct: 210 IREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLNEADNVM 263

Query: 71  RYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
           +      + L +   V+    S+           P+        E      +E  K  NA
Sbjct: 264 QM---FANNLGVK--VIHVDASEQFMAKLAGVTDPEQKRKIIGAEFIEVFDAEEKKLTNA 318

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++ L +  P     ++++R 
Sbjct: 319 KWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRE 375

Query: 180 FLLQRNIS 187
             +   + 
Sbjct: 376 LGVALGLP 383


>gi|269213735|ref|ZP_05982744.2| GMP synthase [Neisseria cinerea ATCC 14685]
 gi|269145638|gb|EEZ72056.1| GMP synthase [Neisseria cinerea ATCC 14685]
          Length = 522

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 205 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 258

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISE 112
               E + V D     L +   V+     +           P+        E      +E
Sbjct: 259 N---EGKMVMDMFARNLGVK--VIHVDAEEQFMAKLASVTDPEKKRKIIGAEFIEVFDAE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +  ++ L +  P    
Sbjct: 314 EKKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 371 FKDEVRELGVALGLP 385


>gi|197303193|ref|ZP_03168235.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC
           29176]
 gi|197297733|gb|EDY32291.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC
           29176]
          Length = 358

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 62/208 (29%), Gaps = 58/208 (27%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRET 65
               ++V +SGG DS      L                 + +  + +         L   
Sbjct: 2   SKGKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENTVQEENGGCC---GLS-- 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYAL 109
           A D+ R V    + + I + V+++K+   ++ +                 A  R  ++  
Sbjct: 57  AVDDARRV---AAAIGIPYYVMNFKDEFQKSVIEYFTKEYLAGRTPNPCIACNRYVKWEA 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI---- 165
           + + + +I A  I T H    ++E         +   G        T+  D    +    
Sbjct: 114 LLQRSLSIGADYIATGHYA--RIE---------HLPNGRYAIRRSATMEKDQTYALYNLT 162

Query: 166 -------SRPFLRCRREDIRSFLLQRNI 186
                    P     ++ IR    +  +
Sbjct: 163 QEQLARTLMPVGEYSKDRIREMADEIGL 190


>gi|254437717|ref|ZP_05051211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 307]
 gi|198253163|gb|EDY77477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 307]
          Length = 379

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 59/202 (29%), Gaps = 52/202 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDEVRY 72
            ++VA+SGG DS  +   L     D     ++      DH             A  ++  
Sbjct: 20  RVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLY----DHG--AALAKKGACCAGRDIHD 73

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKT 116
              V   +   H V+ ++N+  +  +   A                   ++  + E AK 
Sbjct: 74  ARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFKDLLETAKD 133

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL---------YDLNLWISR 167
           ++A  + T H             QR    +G  L    D                L   R
Sbjct: 134 LDADCMATGH-----------YIQRKMGPRGAQLHCAEDANRDQSYFLFSTKPEQLEYLR 182

Query: 168 -PFLRC-RREDIRSFLLQRNIS 187
            P      ++  R    +  ++
Sbjct: 183 FPLGHLPSKDATRELARKYGLA 204


>gi|170757538|ref|YP_001780806.1| hypothetical protein CLD_3386 [Clostridium botulinum B1 str. Okra]
 gi|169122750|gb|ACA46586.1| conserved hypothetical protein TIGR00268 [Clostridium botulinum B1
           str. Okra]
          Length = 272

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 35/175 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + VA SGG DS  LL A    L D +   I  + +               +   ++ +
Sbjct: 22  GSVAVAFSGGVDSTLLLKAAKEALGDNA---ISITVV------SPYIPKWEIKEAKELAN 72

Query: 79  RLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDDQLET 134
            + I    +     +  +          +  + S+    AK      I+     DD    
Sbjct: 73  NIGIKSYFLEVPMLEEIRFNPEDRCYICKKGVFSKIKELAKEKGVKYIVDGTNLDD---- 128

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNIS 187
                     +   G+  + +       L +  P L     +E+IR+   +  + 
Sbjct: 129 --------TKDYRPGMRALKE-------LDVKSPLLENSINKEEIRTLSKELGLE 168


>gi|163781841|ref|ZP_02176841.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883061|gb|EDP76565.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 356

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 65/195 (33%), Gaps = 29/195 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVD--HCLRETAKDEVRYVSD 75
            + V +SGG DS    + +     +     ++F    A  V+  H +   +  +V+  + 
Sbjct: 2   RVAVGMSGGVDSSVTALLMKEKGHEVIGVTLRFHTIEACEVEGTHNV-CCSPKDVQDAAR 60

Query: 76  VCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHAKTI-N 118
           V  +L I H    W+    +                   A   RE +    + + + + +
Sbjct: 61  VSQKLGIPHLTFDWERIFKERVIDYFVEEYSRGRTPNPCAVCNREVKTGYFARYLRAVAD 120

Query: 119 ATLIMTAHTFDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              + T H    ++E   +     +R    K      +      DL+L +  P     +E
Sbjct: 121 IDRLATGHYA--RIEEDPSFGRVIKRGTDRKRDQSYFLALVRREDLDL-LEFPLGNMTKE 177

Query: 176 DIRSFLLQRNISWCE 190
           ++R       +   +
Sbjct: 178 EVRELARSYGLEVAD 192


>gi|146308500|ref|YP_001188965.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudomonas mendocina ymp]
 gi|226739704|sp|A4XY17|GUAA_PSEMY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145576701|gb|ABP86233.1| GMP synthase (glutamine-hydrolyzing) [Pseudomonas mendocina ymp]
          Length = 525

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 41/205 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61
           + +E     VR+ V  A++L+ +SGG DS  +   LH  + D      + + + VD+   
Sbjct: 212 NIVEDAVAAVRAQVGDANVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLL 265

Query: 62  -LRET-----------------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR 103
            L E                  A  E +++S++               S P+       R
Sbjct: 266 RLHEGDQVMAMFAENMGVKVIRANAEEQFLSNLAGE------------SDPEKKRKIIGR 313

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
                  +E +K  N   +     + D +E+      +      +        +  ++NL
Sbjct: 314 TFIDVFDAEASKLDNIQFLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNL 370

Query: 164 WISRPFLRCRREDIRSFLLQRNISW 188
            +  P     ++++R   L+  + +
Sbjct: 371 KLVEPLRELFKDEVRKIGLELGLPY 395


>gi|332704335|ref|ZP_08424423.1| GMP synthase (glutamine-hydrolyzing) [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554484|gb|EGJ51528.1| GMP synthase (glutamine-hydrolyzing) [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 513

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 73/195 (37%), Gaps = 24/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +R  +   H++  +SGG DS  + + LH  +  R         I VD+  L
Sbjct: 201 SFVESTIKDLRDTLGDDHVVCGLSGGIDSTVVAVLLHKAIGKR------LHCIFVDNGLL 254

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREAR---YALI----SE 112
           R   ++E   V D  +    L + +         P  G+    R+ +   +  I    +E
Sbjct: 255 RINEREE---VIDFLTESFDLNLKYVEAQELFLSPLEGVTDPERKRKIIGHNFIEVFDAE 311

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E++  +      +    + G+ +     +NL +  P    
Sbjct: 312 AHKLQGVKWLAQGTLYPDVIESISFKGPSAVIKSHHNVGGLPEK----MNLKLVEPLREL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 368 FKDEVRKVAYELGLP 382


>gi|242279024|ref|YP_002991153.1| GMP synthase [Desulfovibrio salexigens DSM 2638]
 gi|259647677|sp|C6BSD8|GUAA_DESAD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|242121918|gb|ACS79614.1| GMP synthase, large subunit [Desulfovibrio salexigens DSM 2638]
          Length = 515

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 73/193 (37%), Gaps = 20/193 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  +    +++ +SGG DS  + + LH  +  R         I VD+  L
Sbjct: 203 SFVENCIEEMREKIGDNQVVLGLSGGIDSTVVAVLLHKAIGKR------LHCIFVDNGLL 256

Query: 63  RETAKDEVR-YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---YALISEHAKTIN 118
           R   ++EV  ++ +    L +     +        G+    ++ +   Y  I    +  +
Sbjct: 257 RMHEREEVIGFLEEH-FELNVKCVDSAELFLDKLKGVEDPEKKRKLIGYTFIDVFNEEAS 315

Query: 119 A----TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A      +     + D +E+   +      +    + G+ +    D++L +  P     +
Sbjct: 316 ALKDVKFLAQGTLYPDVIESESFKGPSAVIKSHHNVGGLPE----DMDLDLVEPLRELFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R    +  + 
Sbjct: 372 DEVRKVAYELGLP 384


>gi|326563088|gb|EGE13361.1| GMP synthase [Moraxella catarrhalis 12P80B1]
          Length = 519

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 215 LKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLNEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+   +       +A             RE       E  K     
Sbjct: 269 --QMFAENMGI--RVIRADSEARFLNALAGVSDPEAKRKIIGREFIEVFSEEARKLDGVK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P L   ++++R  
Sbjct: 325 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLLDLFKDEVRKL 381

Query: 181 LLQRNISW 188
            +   I  
Sbjct: 382 GVALGIPH 389


>gi|291521316|emb|CBK79609.1| conserved hypothetical protein TIGR00268 [Coprococcus catus GD/7]
          Length = 269

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 44/174 (25%), Gaps = 32/174 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA SGG DS      L +     +    K  A++ +  L   A   +     V     
Sbjct: 19  LCVAFSGGVDSSV---ILRAACEAAAANGKKVYAVTFETKLHPKAD--LPQAQKVAKEAG 73

Query: 82  IAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
             H V+       +             ++  +  +   A       IM  +  DD     
Sbjct: 74  AIHHVIYVNELDNEEMLNNPVNRCYLCKKYLFQNLLTFAAEKGIDTIMEGNNADD----- 128

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
                         L            L +  P   L   +  +R       +S
Sbjct: 129 --------------LHIYRPGTQAVKELGVLSPLAELGITKAQVREIAADMGLS 168


>gi|241760486|ref|ZP_04758579.1| GMP synthase [Neisseria flavescens SK114]
 gi|241318990|gb|EER55492.1| GMP synthase [Neisseria flavescens SK114]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISE 112
               E + V D     L +   V+     +           P+        E      +E
Sbjct: 258 N---EGKMVMDMFARNLGV--RVIHVDAEEQFLAKLAGVTDPEKKRKIIGAEFIEVFDAE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +  ++ L +  P    
Sbjct: 313 EKKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 370 FKDEVRELGVALGLP 384


>gi|255067638|ref|ZP_05319493.1| GMP synthase [Neisseria sicca ATCC 29256]
 gi|261363746|ref|ZP_05976629.1| GMP synthase [Neisseria mucosa ATCC 25996]
 gi|294668524|ref|ZP_06733621.1| GMP synthase [Neisseria elongata subsp. glycolytica ATCC 29315]
 gi|255048112|gb|EET43576.1| GMP synthase [Neisseria sicca ATCC 29256]
 gi|288568320|gb|EFC89880.1| GMP synthase [Neisseria mucosa ATCC 25996]
 gi|291309487|gb|EFE50730.1| GMP synthase [Neisseria elongata subsp. glycolytica ATCC 29315]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISE 112
               E + V D     L +   V+     +           P+        E      +E
Sbjct: 258 N---EGKMVMDMFARNLGVK--VIHVDAEEQFMAKLAGVTDPEKKRKIIGAEFIEVFDAE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +  ++ L +  P    
Sbjct: 313 EKKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 370 FKDEVRELGVALGLP 384


>gi|157869227|ref|XP_001683165.1| GMP synthase; glutamine amidotransferase [Leishmania major strain
           Friedlin]
 gi|68224049|emb|CAJ03818.1| putative GMP synthase [Leishmania major strain Friedlin]
          Length = 656

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 63/215 (29%), Gaps = 48/215 (22%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           ++R           +L +A SGG DS    + L   L     G  +   I +DH    L 
Sbjct: 211 ALRLIRERTSGGQKVLCLA-SGGVDSTVCAVLLLKAL-----GPERVVCIHIDHGFMRLN 264

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN----- 118
           E+    V+ V  + +   +   +V  +    Q      A+ +R A  +   + +      
Sbjct: 265 ES----VQAVEAL-NAAGVRVHLVKAQEDFAQASTEMTAKGSRAAYTTNKLREVTDPEEK 319

Query: 119 -----------ATLIMTAHTFDDQLETVYMR--------SQRDYAEKGMGLSGM------ 153
                         ++     D  +E + +          +       +  + +      
Sbjct: 320 RNIIGNTFMTVCDRVIKELQLD--VENLLLAQGTLRPDLIESGSKYASVNAAAIKTHHND 377

Query: 154 -CDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                L      I  P     ++++R    +  I 
Sbjct: 378 TAVVRLLRDAGRIIEPLCDYHKDEVRELGARLGIP 412


>gi|325131559|gb|EGC54266.1| GMP synthase [Neisseria meningitidis M6190]
 gi|325139186|gb|EGC61732.1| GMP synthase [Neisseria meningitidis ES14902]
 gi|325141549|gb|EGC64018.1| GMP synthase [Neisseria meningitidis 961-5945]
 gi|325197583|gb|ADY93039.1| GMP synthase [Neisseria meningitidis G2136]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMEKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|309379529|emb|CBX21895.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|304388468|ref|ZP_07370574.1| GMP synthase [Neisseria meningitidis ATCC 13091]
 gi|304337585|gb|EFM03748.1| GMP synthase [Neisseria meningitidis ATCC 13091]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      ++  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAKEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTQKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|261393251|emb|CAX50874.1| GMP synthase [glutamine-hydrolyzing] (glutamine amidotransferase;
           GMP synthetase) [Neisseria meningitidis 8013]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|240079877|ref|ZP_04724420.1| GMP synthase [Neisseria gonorrhoeae FA19]
 gi|240122671|ref|ZP_04735627.1| GMP synthase [Neisseria gonorrhoeae PID332]
 gi|268596020|ref|ZP_06130187.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae FA19]
 gi|268681269|ref|ZP_06148131.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID332]
 gi|293397813|ref|ZP_06642019.1| GMP synthase [Neisseria gonorrhoeae F62]
 gi|268549808|gb|EEZ44827.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae FA19]
 gi|268621553|gb|EEZ53953.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID332]
 gi|291611759|gb|EFF40828.1| GMP synthase [Neisseria gonorrhoeae F62]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|239998115|ref|ZP_04718039.1| GMP synthase [Neisseria gonorrhoeae 35/02]
 gi|268593966|ref|ZP_06128133.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae 35/02]
 gi|268547355|gb|EEZ42773.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae 35/02]
 gi|317165558|gb|ADV09099.1| GMP synthase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|269214512|ref|ZP_05986724.2| GMP synthase [Neisseria lactamica ATCC 23970]
 gi|269209679|gb|EEZ76134.1| GMP synthase [Neisseria lactamica ATCC 23970]
          Length = 522

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 205 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 258

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 259 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 315

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 316 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 372

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 373 DEVRELGVALGLP 385


>gi|161869294|ref|YP_001598461.1| GMP synthase [Neisseria meningitidis 053442]
 gi|226739647|sp|A9M138|GUAA_NEIM0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|161594847|gb|ABX72507.1| GMP synthetase (glutamine-hydrolysing) [Neisseria meningitidis
           053442]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTQKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|121634172|ref|YP_974417.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Neisseria meningitidis FAM18]
 gi|226739648|sp|A1KRY5|GUAA_NEIMF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120865878|emb|CAM09614.1| putative GMP synthetase [Neisseria meningitidis FAM18]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMEKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|218767506|ref|YP_002342018.1| GMP synthase [Neisseria meningitidis Z2491]
 gi|13627135|sp|Q9JW60|GUAA_NEIMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|121051514|emb|CAM07811.1| putative GMP synthetase [Neisseria meningitidis Z2491]
 gi|319409771|emb|CBY90078.1| GMP synthase [glutamine-hydrolyzing] (glutamine amidotransferase;
           GMP synthetase) [Neisseria meningitidis WUE 2594]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|290969182|ref|ZP_06560707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780688|gb|EFD93291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 362

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 47/221 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----AISVDHCLRE----TAKDEVRYV 73
           + VA+SGG DS      L     D     ++         V   +      +A ++ + V
Sbjct: 5   VAVAMSGGVDSSVTAGLLQRRGLDVIGITLRLWEAPPTCEVTENIHACCSLSAVEDAKAV 64

Query: 74  SDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREA-RYALISEHAKTI 117
           +DV   L I H  + +++                        A  +  ++ L+ + A+  
Sbjct: 65  ADV---LGIPHYTLDFRDVFSQDVITYFIQAYKDGKTPNPCIACNKWIKFGLLWQRAQQF 121

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD------TILYDLNLWISRPFLR 171
            A  + T H        +   ++R       G     D       +  DL   I  P   
Sbjct: 122 GADFLATGHYAR-----IVYDARRKVYSLLRGADRRKDQSYVLYQLQQDLLPHILFPMAE 176

Query: 172 CRREDIRSFLLQRNISWC-----ED----PSNTDDRFERVR 203
             + + R    + ++        +D    P N   +F R R
Sbjct: 177 LTKTETRRLAKEWHLPVFNKPESQDICFIPDNDYKKFLRSR 217


>gi|240112085|ref|ZP_04726575.1| GMP synthase [Neisseria gonorrhoeae MS11]
 gi|240124859|ref|ZP_04737745.1| GMP synthase [Neisseria gonorrhoeae SK-92-679]
 gi|254492895|ref|ZP_05106066.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae 1291]
 gi|268598143|ref|ZP_06132310.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae MS11]
 gi|268683440|ref|ZP_06150302.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae SK-92-679]
 gi|226511935|gb|EEH61280.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae 1291]
 gi|268582274|gb|EEZ46950.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae MS11]
 gi|268623724|gb|EEZ56124.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae SK-92-679]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|194100128|ref|YP_002003268.1| GMP synthase [Neisseria gonorrhoeae NCCP11945]
 gi|240013295|ref|ZP_04720208.1| GMP synthase [Neisseria gonorrhoeae DGI18]
 gi|240015741|ref|ZP_04722281.1| GMP synthase [Neisseria gonorrhoeae FA6140]
 gi|240120367|ref|ZP_04733329.1| GMP synthase [Neisseria gonorrhoeae PID24-1]
 gi|240127374|ref|ZP_04740035.1| GMP synthase [Neisseria gonorrhoeae SK-93-1035]
 gi|268685746|ref|ZP_06152608.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|226739646|sp|B4RJH7|GUAA_NEIG2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|193935418|gb|ACF31242.1| GMP synthase [Neisseria gonorrhoeae NCCP11945]
 gi|268626030|gb|EEZ58430.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|322805502|emb|CBZ03066.1| ATP-utilizing enzyme of the PP-loop superfamily [Clostridium
           botulinum H04402 065]
          Length = 266

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 35/175 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCS 78
             + VA SGG DS  LL A    L D +   I  + +               +   ++ +
Sbjct: 16  GSVAVAFSGGVDSTLLLKAAKEALGDNA---ISITVV------SPYIPKWEIKEAKELAN 66

Query: 79  RLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH---AKTINATLIMTAHTFDDQLET 134
            + I    +     +  +          +  + S+    AK      I+     DD    
Sbjct: 67  DIGIKSYFLEVPMLEEIRFNPEDRCYICKKGVFSKIKELAKEKGVKYIVDGTNLDD---- 122

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNIS 187
                     +   G+  + +       L +  P L     +E+IR+   +  + 
Sbjct: 123 --------TKDYRPGMRALKE-------LDVKSPLLENSINKEEIRTLSKELGLE 162


>gi|319745034|gb|EFV97362.1| GMP synthase [Streptococcus agalactiae ATCC 13813]
          Length = 520

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGLLRKNEGD--- 269

Query: 72  YVSDVCSRLRIAH--SVVSWKNSKPQ----TGLMAAAREAR-------YALISEHAKTIN 118
               V   L      +++    SK      +G+    R+ +       Y    E +K   
Sbjct: 270 ---QVMDMLGGKFGLNIIRVDASKRFLDLLSGVEDPERKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++ 
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVH 380

Query: 179 SFLLQRNIS 187
           +      + 
Sbjct: 381 ALGTALGMP 389


>gi|262372981|ref|ZP_06066260.1| tRNA methyl transferase [Acinetobacter junii SH205]
 gi|262313006|gb|EEY94091.1| tRNA methyl transferase [Acinetobacter junii SH205]
          Length = 377

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 58/197 (29%), Gaps = 40/197 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTALEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V  ++ I     ++                AA R          E ++    +HA T+
Sbjct: 56  QAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTL 115

Query: 118 NATLIMTAH-------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H       T + + ET      R           +      ++N  +  P  
Sbjct: 116 GADFIATGHYARRGVSTQNSRGETYA-PLLRGVDNNKDQTYFLHAVHGREINKTLF-PVG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    Q +++
Sbjct: 174 EIEKPEVRRIAEQLDLA 190


>gi|158317731|ref|YP_001510239.1| GMP synthase [Frankia sp. EAN1pec]
 gi|226739620|sp|A8LAX2|GUAA_FRASN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|158113136|gb|ABW15333.1| GMP synthase, large subunit [Frankia sp. EAN1pec]
          Length = 534

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 70/203 (34%), Gaps = 24/203 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++ +E     VR+ V    ++  +SGG DS     A+ + L  R+ G    + + VDH 
Sbjct: 213 MINIVEEAVTAVRAQVGNGRLICGLSGGVDS-----AVAAALVQRAVGD-TLTCVFVDHG 266

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALIS 111
            LR    ++V    D  +   +    V   +           P+       RE    +  
Sbjct: 267 LLRAGEAEQVE--RDFVASTGVDLVHVKAADRFASALAGVTDPEQKRKIIGREF-IRVFE 323

Query: 112 EHAKTINATLIMTAHTFDDQLE-TVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRP 168
           E A+ ++A            ++ T+Y       +     +        +  DL   +  P
Sbjct: 324 ESARELDARAEAEGTHIGFLVQGTLYPDVIESGSPTAAKIKSHHNVGGLPDDLQFDLVEP 383

Query: 169 FLRCRREDIRSFLLQRNISWCED 191
                ++++R    +  +   ED
Sbjct: 384 LRTLFKDEVRRLGEELGLP--ED 404


>gi|284162129|ref|YP_003400752.1| GMP synthase, large subunit [Archaeoglobus profundus DSM 5631]
 gi|284012126|gb|ADB58079.1| GMP synthase, large subunit [Archaeoglobus profundus DSM 5631]
          Length = 304

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 25/191 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             +E     +R  V     ++A+SGG DS    +  +  + DR         + VD  L 
Sbjct: 6   EFVEKAIKEIREKVGDGKAIIALSGGVDSSVCAVLAYKAIGDRLIP------VFVDTGLM 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAR---EARYALISEHAKT 116
           RE    E   + ++   + +         +K  K  T      +   E    +    A+ 
Sbjct: 60  REG---EPERIKEIFGHMGLVFVDAKEEFFKALKGVTDPEEKRKIIGELFVRIFERVAEE 116

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  ++    + D +E++         +    + G      +     +  P     +++
Sbjct: 117 HKADYLIQGTIYPDIIESM------GGIKSHHNVGGFPTKYKFKG---VIEPLRELYKDE 167

Query: 177 IRSFLLQRNIS 187
           +R       + 
Sbjct: 168 VREVARYLGLP 178


>gi|325201444|gb|ADY96898.1| GMP synthase [Neisseria meningitidis M01-240149]
 gi|325207425|gb|ADZ02877.1| GMP synthase [Neisseria meningitidis NZ-05/33]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|302871531|ref|YP_003840167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574390|gb|ADL42181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 360

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 63/199 (31%), Gaps = 39/199 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETA------K 67
              +LVA+SGG DS      L         +     + +      D  +RE +       
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETE----DELIREKSCCSLTAV 57

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           D+ R V+ +   L I + V + K    +                       R+ ++ L  
Sbjct: 58  DDARRVAHI---LDIPYYVFNMKEDFKKEVINYFIDEYIKGRTPNPCIMCNRKIKFELFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           + A  +    I T H     +E   T+     +    +    + +   +  ++      P
Sbjct: 115 KRAMVLGMDYIATGHYA--IIEYDNTLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTIFP 172

Query: 169 FLRCRREDIRSFLLQRNIS 187
             R  ++++R    +  + 
Sbjct: 173 LGRFSKDEVRKLAEKFKLP 191


>gi|302039012|ref|YP_003799334.1| hypothetical protein NIDE3731 [Candidatus Nitrospira defluvii]
 gi|300607076|emb|CBK43409.1| conserved protein of unknown function, PP-loop superfamily
           [Candidatus Nitrospira defluvii]
          Length = 273

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 42/199 (21%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVD 59
            +  +   R  +  +     ++VA SGG DS  +L   H  L +++ G    +A+  ++ 
Sbjct: 7   LIDKLARARQILHEM---GSVIVAFSGGIDSSLVLKLAHDELGEQAVG---VTAVSPTL- 59

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREAR-----YALISEH 113
                 A+ +      + + +   H +V       P+     A R        Y+L+   
Sbjct: 60  ----PAAELDAT--QTIAAEIGARHRIVETDQLDIPEFVRNDATRCYHCKTDLYSLLETL 113

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--R 171
                A  I+     DD              +   GL    +         +  P L   
Sbjct: 114 RTEYAAGYIVDGTNMDDL------------GDDRPGLKAARER-------GVRSPLLEAG 154

Query: 172 CRREDIRSFLLQRNISWCE 190
             + DIR    +  +S  +
Sbjct: 155 FSKADIRDVARELGLSNWD 173


>gi|296313949|ref|ZP_06863890.1| GMP synthase [Neisseria polysaccharea ATCC 43768]
 gi|296839492|gb|EFH23430.1| GMP synthase [Neisseria polysaccharea ATCC 43768]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISE 112
               E + V D     L +   V+     +           P+        E      +E
Sbjct: 258 N---EGKMVMDMFARNLGVK--VIHVDAERQFMAKLAGVTDPEKKRKIIGAEFIEVFDAE 312

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +  ++ L +  P    
Sbjct: 313 EKKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDL 369

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 370 FKDEVRELGVALGLP 384


>gi|292670966|ref|ZP_06604392.1| GMP synthase [Selenomonas noxia ATCC 43541]
 gi|292647587|gb|EFF65559.1| GMP synthase [Selenomonas noxia ATCC 43541]
          Length = 518

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 21/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++     +R  +     L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 205 SFVQKTVEELREKIGSGRALCALSGGVDSSVAAVLLSKAI------GSQLTCVFVDHGLL 258

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHA 114
           R+   DEV  V        +    ++ ++   +        E +          +  E A
Sbjct: 259 RKNEGDEVEAVFGSSGVYDVNFIRINAQDRFYEKLRGITEPEQKRKIIGEEFIRVFEEAA 318

Query: 115 KTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + I A   ++    + D +E+     +    +    + G+ D + +     I  P     
Sbjct: 319 REIGAVDFLVQGTIYPDVIESGL--GKSAVIKSHHNVGGLPDHVDFK---EIVEPLRLLF 373

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  I 
Sbjct: 374 KDEVRAAGRELGIP 387


>gi|303247462|ref|ZP_07333734.1| tRNA methyl transferase-like protein [Desulfovibrio fructosovorans
           JJ]
 gi|302491158|gb|EFL51050.1| tRNA methyl transferase-like protein [Desulfovibrio fructosovorans
           JJ]
          Length = 346

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 26/123 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCSR 79
           + VA SGG+DS+        +L     G     A    H L    K +     ++  C  
Sbjct: 4   LAVAASGGADSL----LALGLLQKEGHGVFAIHA----HFLPPDDKQQQLADAIAAQCEA 55

Query: 80  LRIAHS---------------VVSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIM 123
           + +                   ++   +       AA  R+ ++ L++E A ++ A  I 
Sbjct: 56  IGVPFQAIDLSDAFRARVIAPFIAAYVAGETPNPCAACNRDLKFGLLAEAAISLGADKIA 115

Query: 124 TAH 126
           T H
Sbjct: 116 TGH 118


>gi|167037462|ref|YP_001665040.1| tRNA-specific 2-thiouridylase MnmA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300914208|ref|ZP_07131524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307724557|ref|YP_003904308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
 gi|320115876|ref|YP_004186035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|205810696|sp|B0K991|MNMA2_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|205815314|sp|B0K0P8|MNMA2_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|166856296|gb|ABY94704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889143|gb|EFK84289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307581618|gb|ADN55017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
 gi|319928967|gb|ADV79652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 364

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 41/198 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH----------CLRETAKDEV 70
            + + +SGG DS      L     D     ++     VDH          C    A  + 
Sbjct: 6   RVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVW---VDHEAKAFDSDKSCCSLKATQDA 62

Query: 71  RYVSDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISEHA 114
           + V+++   L I H                 V+               R+ ++  + E A
Sbjct: 63  KKVAEI---LGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKA 119

Query: 115 KTINATLIMTAHT-FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PF 169
             + A  I T H    +  E    +++R   +KG+  S     +LY L          P 
Sbjct: 120 FELGAYYIATGHYVRKEYDE----KTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPL 175

Query: 170 LRCRREDIRSFLLQRNIS 187
              ++E+IR+   +  + 
Sbjct: 176 GNYKKEEIRALAEELKLP 193


>gi|157813158|gb|ABV81324.1| putative GMP synthetase [Cydia pomonella]
          Length = 194

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 2   FLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             S  E+   ++R  V  +  +LV VSGG DS      L + L +      +  A+ +D+
Sbjct: 26  LRSRREACVQYIRDAVGDSNKVLVLVSGGVDSTVCAALLRTALRED-----QVIALHIDN 80

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG---LMAAAREA 105
              R+    E   V      L +   VV+  +   Q       A  R  
Sbjct: 81  GFMRKN---ESSKVERCLRELGVRLHVVNASHQFRQGSTVVREAGGRTR 126


>gi|313669142|ref|YP_004049426.1| GMP synthetase [Neisseria lactamica ST-640]
 gi|313006604|emb|CBN88069.1| putative GMP synthetase [Neisseria lactamica 020-06]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|220905069|ref|YP_002480381.1| GMP synthase [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869368|gb|ACL49703.1| GMP synthase, large subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 511

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 71/201 (35%), Gaps = 26/201 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E V   +   V   H++ A+SGG DS  + + LH  +  R         I VD+  L
Sbjct: 199 SFVERVVKEMAEQVGDKHVVCALSGGIDSTVVAVLLHRAIGKR------LHCIFVDNGLL 252

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHA 114
           R     + V Y+ +    L +       +      G+     + R         +  E A
Sbjct: 253 RLGEGDEVVSYLREH-FDLNLNFVQAQERFLSKLKGVEDP-EKKRKIIGHTFIEIFDEEA 310

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
             ++    +     + D +E++  +      +    + G+ DT    + L +  P     
Sbjct: 311 NKLDQVDFLAQGTLYPDVIESISHKGPSAVIKSHHNVGGLPDT----MKLKLIEPLRELF 366

Query: 174 REDIRSFLLQRN----ISWCE 190
           ++++R    +      I W  
Sbjct: 367 KDEVRKVAAELGMPDSIVWRH 387


>gi|59802458|ref|YP_209170.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Neisseria gonorrhoeae FA 1090]
 gi|240114831|ref|ZP_04728893.1| GMP synthase [Neisseria gonorrhoeae PID18]
 gi|240117033|ref|ZP_04731095.1| GMP synthase [Neisseria gonorrhoeae PID1]
 gi|260441353|ref|ZP_05795169.1| GMP synthase [Neisseria gonorrhoeae DGI2]
 gi|268600487|ref|ZP_06134654.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID18]
 gi|268602719|ref|ZP_06136886.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID1]
 gi|291044713|ref|ZP_06570422.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae DGI2]
 gi|75355263|sp|Q5F4X9|GUAA_NEIG1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|59719353|gb|AAW90758.1| putative GMP synthetase [Neisseria gonorrhoeae FA 1090]
 gi|268584618|gb|EEZ49294.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID18]
 gi|268586850|gb|EEZ51526.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae PID1]
 gi|291011607|gb|EFE03603.1| bifunctional GMP synthase/glutamine amidotransferase [Neisseria
           gonorrhoeae DGI2]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|262306025|gb|ACY45605.1| gln amidotransferase [Cryptocellus centralis]
          Length = 196

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           F+R  V    +L+ +SGG DS      LH  L +      +  A+ +D+   R+    E 
Sbjct: 36  FIRRSVGSNKVLMLLSGGVDSTVCAALLHKALKED-----QVIAVHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V     RL +   V++
Sbjct: 88  LQVEQSLRRLGVKMRVIN 105


>gi|260551320|ref|ZP_05825521.1| GMP synthetase [Acinetobacter sp. RUH2624]
 gi|260405634|gb|EEW99125.1| GMP synthetase [Acinetobacter sp. RUH2624]
          Length = 522

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LREQIGNEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+     +     +A             RE       E  K     
Sbjct: 272 --QMFAENMGI--RVIRADAEQRFLNALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|73663631|ref|YP_302412.1| GMP synthase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
 gi|91206832|sp|Q49UU9|GUAA_STAS1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|72496146|dbj|BAE19467.1| GMP synthase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 513

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D   
Sbjct: 212 IRNQVGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD--- 262

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    V  +          S P+        E  Y    E +K      
Sbjct: 263 MVMEQFGEGFNMNIIRVDAQERFMSKLQGVSDPEQKRKIIGNEFIYVFDDEASKLKGVDF 322

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 323 LAQGTLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFQLIEPINTLFKDEVRELG 376

Query: 182 LQRNIS 187
           ++  I 
Sbjct: 377 IELGIP 382


>gi|146277942|ref|YP_001168101.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC
           17025]
 gi|205817026|sp|A4WTT2|MNMA_RHOS5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145556183|gb|ABP70796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 378

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 54/237 (22%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M   P+ S+ F          ++VA+SGG DS  +   L +   D     ++      DH
Sbjct: 1   MLDHPLNSLGFA--KPPSATRVVVAMSGGVDSSVVAAELAADGYDVVGVTLQLY----DH 54

Query: 61  CLRET--------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--- 109
                        A  ++     V   +   H V+ ++N+  +  +   A          
Sbjct: 55  G--AALAKKGACCAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPV 112

Query: 110 -------------ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
                        + + AK ++A  + T H             QR     G  L    D 
Sbjct: 113 PCIRCNERVKFKDLLQTAKDLDADCMATGH-----------YIQRKMGAAGPELHCAADA 161

Query: 157 IL----------YDLNLWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                        +   ++  P      + + R+   +  +   + P + D  F   
Sbjct: 162 ARDQSYFLFSTTREQLDYLRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPN 218


>gi|294645485|ref|ZP_06723186.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
 gi|292639186|gb|EFF57503.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a]
          Length = 134

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 28/123 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L           +                DE +   ++  R
Sbjct: 6   KRVLVGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAER 53

Query: 80  LRIAHSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I H V   +    +T     +   ++ R             + +++E A  +N   + 
Sbjct: 54  MGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVA 113

Query: 124 TAH 126
           T H
Sbjct: 114 TGH 116


>gi|238783798|ref|ZP_04627817.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970]
 gi|238715349|gb|EEQ07342.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970]
          Length = 373

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 53/196 (27%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++             A  +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    L         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q ++
Sbjct: 173 ELEKPEVRRIAEQLDL 188


>gi|238752466|ref|ZP_04613942.1| GMP synthase [glutamine-hydrolyzing] [Yersinia rohdei ATCC 43380]
 gi|238709315|gb|EEQ01557.1| GMP synthase [glutamine-hydrolyzing] [Yersinia rohdei ATCC 43380]
          Length = 554

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  + +R       + + VD+  L
Sbjct: 241 TIIEDAIVRLREQIGEDHVILGLSGGVDSSVTAMLLHRAIGNR------LTCVFVDNGLL 294

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +    +  +    V+ ++          +P+       R        E
Sbjct: 295 RLN---EANQVLEMFGDKFGLNIVHVAAEDRFLTALAGVDEPEAKRKIIGRVFVELFDEE 351

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 352 ACKQEQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 408

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 409 FKDEVRKIGLELGLPY 424


>gi|14591383|ref|NP_143461.1| hypothetical protein PH1608 [Pyrococcus horikoshii OT3]
 gi|3258037|dbj|BAA30720.1| 295aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 295

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 57/208 (27%), Gaps = 51/208 (24%)

Query: 1   MFLSPIESVRFF-VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M  + I  ++ F   + +    I++  SGG DS   L  L              SA++  
Sbjct: 35  MLNNVIRELKRFGEETKIINKRIILMFSGGKDSSLALYLLKE-------AGYNVSALTFF 87

Query: 60  HCLRETAKDEVRYVS---DVCSRLRIAHSVVSWKNSKPQTGLMAAARE------------ 104
           H            +        +L + H ++       +    A  R+            
Sbjct: 88  HKWS-----WPEVLRWGMKFTKKLGVTHYLIDITEGLKR---EAIGRKGPICIHCKKVML 139

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI----LYD 160
                    A      LI      +D++              G  L      I    +  
Sbjct: 140 WNAKWF---AVNNGFELIAKGDNANDKI-------------IGTLLDQCPGDIRICEIPK 183

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISW 188
           + + I RP ++ +  +I     +  I  
Sbjct: 184 IGIPIFRPLIKYKAREIEMLTNEAGIKP 211


>gi|262306101|gb|ACY45643.1| gln amidotransferase [Scutigera coleoptrata]
          Length = 197

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R +V    +L+ VSGG DS      LH  L D      +  A+ +D+   R+    E 
Sbjct: 36  YIREIVGTNKVLMLVSGGVDSTVCAALLHKALKDD-----QVIAVHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           R V    S++ +   VV+
Sbjct: 88  RQVEQSLSKIGLKLKVVN 105


>gi|239787342|emb|CAX83819.1| tRNA-specific 2-thiouridylase MnmA [uncultured bacterium]
          Length = 366

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 69/199 (34%), Gaps = 31/199 (15%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRET--- 65
           F +  +   A + VA+SGG DS  +   +H          ++      DH   +++T   
Sbjct: 8   FALAGIPKGARVAVAMSGGVDSSVVAALMHKEGYQVVGITLQLY----DHGEAIQKTKTC 63

Query: 66  -AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----R------------EARYA 108
            A  ++     V  ++   H V+ +++   +  +   A    R            + ++ 
Sbjct: 64  CAGQDIYDARRVSEKIGFHHYVLDYESIFKEEVIDDFADSYLRGETPIPCVQCNQKIKFR 123

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +   A+ ++   ++T H     ++ +     + +         +  T   DLN ++  P
Sbjct: 124 DLLRTARDLDCAALVTGH----YVQNINGELHQAHDPSRDQSYFLFSTKQQDLN-YLRFP 178

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +   R    +  + 
Sbjct: 179 LGGIPKSQTRILAEEFGLE 197


>gi|256824629|ref|YP_003148589.1| GMP synthase (glutamine-hydrolyzing) [Kytococcus sedentarius DSM
           20547]
 gi|256688022|gb|ACV05824.1| GMP synthase (glutamine-hydrolyzing) [Kytococcus sedentarius DSM
           20547]
          Length = 527

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 43/210 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE++   VR+ V    ++  +SGG DS      +   + D      + + + VDH  L
Sbjct: 203 NVIETLVQEVRAKVGDDRVICGLSGGVDSSVAAALVQRAVGD------QLTCVFVDHGLL 256

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNS---------KPQT-----------GLMA 100
           R   +++V   +V        +    V   +          +P+T               
Sbjct: 257 RSGEREQVENDFVEAT----GVDLVTVDATDQFLDALAGVTEPETKRKIIGREFIRSFEQ 312

Query: 101 AAREA---RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
           AAR+    R               ++    + D +E+             +        +
Sbjct: 313 AARDVVSGRAG--EGTDDEHPVKWLVQGTLYPDVVES-----GGGAGTATIKSHHNVGGL 365

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             DL   +  P     ++++R+   +  + 
Sbjct: 366 PDDLQFGLVEPLRMLFKDEVRAIGRELGVP 395


>gi|225351906|ref|ZP_03742929.1| hypothetical protein BIFPSEUDO_03510 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157153|gb|EEG70492.1| hypothetical protein BIFPSEUDO_03510 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 520

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+   ++V+
Sbjct: 209 IREKVGDAQVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKGEAEQVK 262

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAK 115
           +  D      I    V     +  +          R            +A+  +I E   
Sbjct: 263 H--DFVEATGIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGA 320

Query: 116 TINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      +   T   D +E+             +        +  D+   +  P     +
Sbjct: 321 SGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPDDIKFQLVEPLRTLFK 375

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 376 DEVRAIGTELGLP 388


>gi|282899767|ref|ZP_06307730.1| Glutamine amidotransferase, class-I [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195382|gb|EFA70316.1| Glutamine amidotransferase, class-I [Cylindrospermopsis raciborskii
           CS-505]
          Length = 540

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 27/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC----LRETAKD 68
           +R+ V    +L+A+SGG DS  L   LH  + D      + + + +D      L      
Sbjct: 230 IRAKVSDRRVLLALSGGVDSSTLAFLLHKAIGD------QLTCVFIDQGFMRKLEPE--- 280

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTIN-A 119
             R +     +  I    V+ ++         T      R   +       E +K +   
Sbjct: 281 --RLLKLFQEQFHIPVEYVNARDRFINAIAGVTDPEEKRRRIGHEFIRVFEETSKRLGHF 338

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFLRCRRED 176
             +     + D +E+          E+             +  DL   +  P  +  +++
Sbjct: 339 DYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHNVGGLPKDLRFKLVEPLRKLFKDE 398

Query: 177 IRSFLLQRNIS 187
           +R       + 
Sbjct: 399 VRKVGRSLGLP 409


>gi|262281331|ref|ZP_06059112.1| GMP synthetase [Acinetobacter calcoaceticus RUH2202]
 gi|262257157|gb|EEY75894.1| GMP synthetase [Acinetobacter calcoaceticus RUH2202]
          Length = 522

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LRKQIGDEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINAT 120
                   + I   V+     +           P+       RE       E  K     
Sbjct: 272 --QMFAENMGI--RVIRADAEERFLTALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLEFELVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|258404437|ref|YP_003197179.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfohalobium retbaense DSM 5692]
 gi|257796664|gb|ACV67601.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfohalobium retbaense DSM 5692]
          Length = 349

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 26/122 (21%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCSRL 80
            VAVSGG+DS+  L+AL     D         A+   H L   A   D    +   C  L
Sbjct: 4   AVAVSGGADSLFALLALREAGHD-------VLALH-AHFLAPDAVDADVQDRLRHCCKTL 55

Query: 81  RIAHSVVSWKNSKPQ---------------TGLMAAAR-EARYALISEHAKTINATLIMT 124
            +   +V   +   +                   A      ++ ++ + AK +      T
Sbjct: 56  GVDLEIVDLHHKFAELVITPFIEHYAQGMTPNPCALCNPRIKFGILRDAAKQLGCKGFAT 115

Query: 125 AH 126
            H
Sbjct: 116 GH 117


>gi|218506241|ref|ZP_03504119.1| hypothetical protein RetlB5_00882 [Rhizobium etli Brasil 5]
          Length = 180

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 22/145 (15%)

Query: 4   SPIESVRFFVRS---LVYPAHILVAVSGGSDSMGLLI---ALHSVLSDRSFGKIKFSAIS 57
             +  VR        L      L+ +SGG DS        AL   L  R    ++  A +
Sbjct: 44  RLLRQVRQAFDDFDMLKGQKRWLIGLSGGKDS----YGLLALLLDLQWRGLLPVELIACN 99

Query: 58  VDHCLRETAKDEVRYVS-DVCSRLRIAHSV-------VSWKNSKPQTGLMAAAREARYAL 109
           +D   +       ++V  D  +R+ + H +       +  +         +     R   
Sbjct: 100 LDQG-QPN---FPKHVLPDYLTRIGVRHRIEYRDTYSIVKEKVPEGATYCSLCSRLRRGN 155

Query: 110 ISEHAKTINATLIMTAHTFDDQLET 134
           +   A+      ++  H  +D LET
Sbjct: 156 LYRIAREEGCDALVLGHHREDILET 180


>gi|212716079|ref|ZP_03324207.1| hypothetical protein BIFCAT_00992 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661446|gb|EEB22021.1| hypothetical protein BIFCAT_00992 [Bifidobacterium catenulatum DSM
           16992]
          Length = 520

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 63/193 (32%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+   ++V+
Sbjct: 209 IREKVGDAQVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKGEAEQVK 262

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAK 115
           +  D      I    V     +  +          R            +A+  +I E   
Sbjct: 263 H--DFVEATGIKLIAVDASEDFLTALKGVSEPEKKRKIIGEKFIRTFEKAQRQVIEEAGA 320

Query: 116 TINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      +   T   D +E+             +        +  D+   +  P     +
Sbjct: 321 SGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPDDIKFQLVEPLRTLFK 375

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 376 DEVRAIGTELGLP 388


>gi|146311302|ref|YP_001176376.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter sp. 638]
 gi|205816867|sp|A4W9E5|MNMA_ENT38 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145318178|gb|ABP60325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter sp. 638]
          Length = 369

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 36/136 (26%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV--- 73
             P  ++V +SGG DS      L           +K               D   Y    
Sbjct: 3   ASPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAA 52

Query: 74  ------SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALI 110
                   VC +L I    V++                +  R               A +
Sbjct: 53  ADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFL 112

Query: 111 SEHAKTINATLIMTAH 126
              A+ + A  I T H
Sbjct: 113 EFAAEDLGADFIATGH 128


>gi|330016186|ref|ZP_08308416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. MS 92-3]
 gi|328529471|gb|EGF56376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. MS 92-3]
          Length = 388

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 26  KKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 75

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 76  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 135

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 136 AEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 191

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    + ++
Sbjct: 192 ELEKPQVRKIAEELDL 207


>gi|288555376|ref|YP_003427311.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus
           pseudofirmus OF4]
 gi|288546536|gb|ADC50419.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus
           pseudofirmus OF4]
          Length = 367

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 40/202 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETA 66
           ++       ++V +SGG DS    + L     D      +++     S          TA
Sbjct: 1   MKKRPEDTKVVVGMSGGVDSSVTALVLKEQGYDVIGIFMKNWDDTDESGFC-------TA 53

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYALI 110
            ++   V  VC+++ I +  V+++           L    A R          E ++   
Sbjct: 54  TEDYEDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAF 113

Query: 111 SEHAKTINATLIMTAHTFDDQLETV-----YMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
             HA  + A  + T H    ++E V      +R      ++   L+ +    L       
Sbjct: 114 LNHAMALGADYVATGHYA--RVEEVDGEFQLLRGVDSNKDQTYFLNALSQQQLSKTMF-- 169

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     ++++R   L  +++
Sbjct: 170 --PIGHIPKKEVREKALAADLA 189


>gi|288554931|ref|YP_003426866.1| GMP synthase [Bacillus pseudofirmus OF4]
 gi|288546091|gb|ADC49974.1| GMP synthase [Bacillus pseudofirmus OF4]
          Length = 513

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 26/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R+ V    +L A+SGG DS  + + +H  + D      + + + +DH  L
Sbjct: 203 NFIEIEMEKIRAQVGNKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFIDHGLL 256

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R   KDE   V         +    +  +          S P+        E  Y    E
Sbjct: 257 R---KDEAEGVMKTFSEGFNMNVIKIDAQERFLSKLKGVSDPEQKRKIIGNEFIYVFEEE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            ++  +   +     + D +E            + +        +  D+   +  P    
Sbjct: 314 TSQLTDMDFLAQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDMKFTLIEPLNTL 367

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  I 
Sbjct: 368 FKDEVRELGSELGIP 382


>gi|269796118|ref|YP_003315573.1| GMP synthase [Sanguibacter keddieii DSM 10542]
 gi|269098303|gb|ACZ22739.1| GMP synthase (glutamine-hydrolyzing) [Sanguibacter keddieii DSM
           10542]
          Length = 526

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKD--E 69
           +R  V  A ++  +SGG DS      +   +        + + + VDH  LRE   +  E
Sbjct: 215 IREQVGDARVICGLSGGVDSSVAAALVQKAV------GSQLTCVFVDHGLLREGEAEQVE 268

Query: 70  VRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTI--- 117
           V +V        +   VV  +          S P+T      RE    +  + A+ +   
Sbjct: 269 VDFVEST----GVKLKVVDARERFLSALAGVSDPETKRKIIGREF-IRVFEDAAREVVEE 323

Query: 118 ------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
                     ++    + D +E+             +        +  DL   +  P   
Sbjct: 324 AGEVGSEVKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFSLVEPLRT 378

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R+  L+  + 
Sbjct: 379 LFKDEVRAVGLELGVP 394


>gi|227546020|ref|ZP_03976069.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213654|gb|EEI81503.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 520

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREKVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNS--KPQTGLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +       G+    R              +A+  ++ E  
Sbjct: 260 QVKHDFVAATGIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 320 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPEDIKFQLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|157371830|ref|YP_001479819.1| GMP synthase [Serratia proteamaculans 568]
 gi|226739724|sp|A8GHV1|GUAA_SERP5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157323594|gb|ABV42691.1| GMP synthase, large subunit [Serratia proteamaculans 568]
          Length = 525

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAVERIRQQVGEDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +       +    V+ ++          +P+       R        E
Sbjct: 266 RLN---EAEQVLEMFGDHFGLNIVHVAAEDRFLSALAGVDEPEAKRKIIGRVFVELFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQSEVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|328542757|ref|YP_004302866.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           contains the PP-loop ATPase domain [polymorphum gilvum
           SL003B-26A1]
 gi|326412503|gb|ADZ69566.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Polymorphum gilvum SL003B-26A1]
          Length = 393

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 54/183 (29%), Gaps = 33/183 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEV 70
                ++VA+SGG DS  +   +     D     ++      DH     R     A  ++
Sbjct: 11  PQDTRVVVAMSGGVDSSVVAGLMKQEGYDVVGVTLQLY----DHGAAVQRAGACCAGQDI 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT--F 128
                V  RL I H V+ ++    +  +   A        S  A       +    T  F
Sbjct: 67  HDARRVAERLGIPHYVLDYERRFKEAVIDRFAE-------SYMAGETPIPCVACNQTVKF 119

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP---------FLRCRREDIRS 179
            D LET      R      +       +        + RP         FL    ++   
Sbjct: 120 SDLLET-----ARTLGADVLATGHYVRSAPAGNRRALYRPADLDRDQSYFLFATTQEQLD 174

Query: 180 FLL 182
           FL 
Sbjct: 175 FLR 177


>gi|319944511|ref|ZP_08018782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lautropia mirabilis ATCC 51599]
 gi|319742224|gb|EFV94640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lautropia mirabilis ATCC 51599]
          Length = 393

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 55/195 (28%), Gaps = 37/195 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
              I+V +SGG DS      L       +   +K               D+  Y      
Sbjct: 10  GRQIVVGLSGGVDSAVSAWLLKEAGWQVTGLFMKNW----------EDDDDSEYCSSRQD 59

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQT--GLMAAAREA--------------RYALISEH 113
               + V   + I    V++     +    L   A EA              ++    +H
Sbjct: 60  WLDAASVADVIGIDLEAVNFAADYRERVFSLFLQAYEAGFTPNPDILCNAEIKFKAFLDH 119

Query: 114 AKTINATLIMTAHTFDDQL-ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           A  + A  I T H   +++      +  R           +     Y L+  +  P    
Sbjct: 120 ALALGAERIATGHYAGNRIGPDGLAQLLRGADANKDQSYFLHRLNQYQLSRAVF-PLAGI 178

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  + 
Sbjct: 179 TKPEVREIAARIGLP 193


>gi|282895929|ref|ZP_06303969.1| Glutamine amidotransferase, class-I [Raphidiopsis brookii D9]
 gi|281199174|gb|EFA74043.1| Glutamine amidotransferase, class-I [Raphidiopsis brookii D9]
          Length = 540

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 27/198 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---- 61
           +E+    +R+ V    +L+A+SGG DS  L   LH  + D      + + + +D      
Sbjct: 223 VENAIREIRAKVSDRRVLLALSGGVDSSTLAFLLHKAIGD------QLTCVFIDQGFMRK 276

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEH 113
           L        R +     +  I    V+ ++         T      R   +       E 
Sbjct: 277 LEPE-----RLLKLFQEQFHIPVEYVNARDRFINAIAGVTDPEEKRRRIGHEFIRVFEET 331

Query: 114 AKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPF 169
           +K +     +     + D +E+          E+             +  DL   +  P 
Sbjct: 332 SKRLGHFDYLAQGTLYPDVIESAGTNVDPKTGERVAVKIKSHHNVGGLPKDLRFKLVEPL 391

Query: 170 LRCRREDIRSFLLQRNIS 187
            +  ++++R       + 
Sbjct: 392 RKLFKDEVRKVGRSLGLP 409


>gi|260062425|ref|YP_003195505.1| tRNA-specific 2-thiouridylase MnmA [Robiginitalea biformata
           HTCC2501]
 gi|88783988|gb|EAR15159.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Robiginitalea biformata HTCC2501]
          Length = 399

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 55/203 (27%), Gaps = 51/203 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA------------K 67
             ++V +SGG DS    + L     +     +K           + +             
Sbjct: 5   RKVVVGLSGGVDSSVTALLLKQQGYEVIGLFMK--------NWHDDSVTISRECPWLDDS 56

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALIS 111
           ++   V     +L I    V    +  +                       RE ++ L  
Sbjct: 57  NDALIV---AEKLGIPFQTVDLSAAYKERIVNYMFREYQQGRTPNPDVLCNREIKFDLFL 113

Query: 112 EHAKTINATLIMTAHTF--------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           + A  + A  + T H          D Q+    +       ++   L  +    L     
Sbjct: 114 KIAMDLGADFVATGHYCRKDEATGPDGQVRYRLLAGADANKDQSYFLCQLNQEQLSRA-- 171

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
               P    ++ ++R+   +  +
Sbjct: 172 --LFPIGHLQKSEVRALAAENGL 192


>gi|255536681|ref|YP_003097052.1| tRNA-specific 2-thiouridylase MnmA [Flavobacteriaceae bacterium
           3519-10]
 gi|255342877|gb|ACU08990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 395

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 60/202 (29%), Gaps = 51/202 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            I+V +SGG DS      L     +      R++     +            +DE  ++ 
Sbjct: 2   KIVVGLSGGVDSSVAAYLLQKQGHEVVALFMRNWNDASVTL-----------EDECPWIE 50

Query: 75  D------VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISE 112
           D      V  +L I   V+       +                       RE ++ +  +
Sbjct: 51  DSNDALMVAQKLGIPFQVIDMSELYKEKIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMK 110

Query: 113 HAKTINATLIMTAH------TFDDQL-ETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            A ++ A  + T H      T D+   E    +  + +  ++   L  +    L      
Sbjct: 111 TALSLGAEKVATGHYARVDSTVDENGNEMFHLLAGKDNNKDQSYFLCQLSQDQLSKS--- 167

Query: 165 ISRPFLRCRREDIRSFLLQRNI 186
              P     + ++R    +  +
Sbjct: 168 -LFPIGELTKPEVREIAKEIGL 188


>gi|239618500|ref|YP_002941822.1| phosphoadenosine phosphosulfate reductase [Kosmotoga olearia TBF
           19.5.1]
 gi|239507331|gb|ACR80818.1| phosphoadenosine phosphosulfate reductase [Kosmotoga olearia TBF
           19.5.1]
          Length = 319

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 39/187 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I  +R F         ++VA SGG DS      L ++L+  + GK     I+V  C  
Sbjct: 10  KSIAEIRTFAN------KLVVAFSGGEDST-----LVALLAREALGKDNVKLINV--CFG 56

Query: 64  ETA-KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--REARYALISEHAKTINAT 120
             +    +  V+ + ++L +          + +      +  R  R+A  +   K   A 
Sbjct: 57  PYSYSAGLEIVASLAAKLGLRLEFTPGYEEQEKIWRHGPSCNRCTRFAKFNSVRKATTA- 115

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           LI T     D            + + G+ LS             +  P     +E+I+  
Sbjct: 116 LIATGANQSD-----------TWGQTGIALSK-----------GLYSPIRDWTKEEIKKA 153

Query: 181 LLQRNIS 187
           L    + 
Sbjct: 154 LNFFGVE 160


>gi|167589354|ref|ZP_02381742.1| GMP synthase, large subunit [Burkholderia ubonensis Bu]
          Length = 539

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 65/200 (32%), Gaps = 27/200 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  -LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYA 108
            LR     E + V D    RL     VV    S+   G +A             RE    
Sbjct: 259 LLRLN---EGQMVLDMFAGRLH--AKVVHVDASEQFLGHLAGVTDPEAKRKIIGREFVEV 313

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             +E  K   A  +     + D +E+      +      +        +   L L +  P
Sbjct: 314 FQAEAKKLSKAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEP 370

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R   +   +  
Sbjct: 371 LRDLFKDEVRELGVALGLPP 390


>gi|163790890|ref|ZP_02185314.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Carnobacterium sp. AT7]
 gi|159873843|gb|EDP67923.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Carnobacterium sp. AT7]
          Length = 516

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 30/201 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IES    +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  L
Sbjct: 206 DFIESEIAIIRETVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLL 259

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V   +  +  +    V  K          S P+T       E  Y    E
Sbjct: 260 RKG---ESEQVMESLVGKFGLNIIRVDAKERFMAKLAGVSDPETKRKIIGNEFVYVFDDE 316

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  ++   +  P    
Sbjct: 317 ATKLDGVNFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPENMQFKLIEPLNTL 370

Query: 173 RREDIRSFLLQRN----ISWC 189
            ++++R   +Q      + W 
Sbjct: 371 FKDEVRELGIQLGMPESLVWR 391


>gi|90021322|ref|YP_527149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharophagus degradans 2-40]
 gi|123090544|sp|Q21K42|MNMA_SACD2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89950922|gb|ABD80937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Saccharophagus degradans 2-40]
          Length = 380

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 64/206 (31%), Gaps = 45/206 (21%)

Query: 12  FVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           F  +   PA+   ++V +SGG DS    + L           +K               D
Sbjct: 8   FTPNDPRPANEITVIVGMSGGVDSSVSALLLKQQGYKVEGLFMKNW----------DEDD 57

Query: 69  EVRYV---------SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------R 103
              Y          + VC +L I     +     W N          A           R
Sbjct: 58  GTEYCTAMTDLMDAAAVCQKLDIHLHTANFARQYWDNVFEYFLEEYKACRTPNPDILCNR 117

Query: 104 EARYALISEHAKTINATLIMTAH-TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYD 160
           E ++ +  E+AK + A  I T H T   Q E  T   +      ++   L  +     + 
Sbjct: 118 EIKFKVFLEYAKKLGADYIATGHYTRTSQHEGCTQLRKGLDPNKDQSYFLHAV-GEQEFA 176

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNI 186
             L+   P     +  +R+   +R +
Sbjct: 177 QTLF---PIGDIEKPQVRAIAEERGL 199


>gi|324503970|gb|ADY41713.1| GMP synthase [glutamine-hydrolyzing] [Ascaris suum]
          Length = 769

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +R++V    +LV VSGG DS      +H  L     G  K  AI +D
Sbjct: 304 IRNVVGDKKVLVMVSGGVDSTVCAALMHKAL-----GPDKVVAIHID 345


>gi|307152944|ref|YP_003888328.1| GMP synthase large subunit [Cyanothece sp. PCC 7822]
 gi|306983172|gb|ADN15053.1| GMP synthase, large subunit [Cyanothece sp. PCC 7822]
          Length = 528

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 22/194 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           ESVR  +R+ V    +L+A+SGG DS  L   LH  + D      + + + +D    R+ 
Sbjct: 213 ESVRE-IRAKVGDKRVLLALSGGVDSSTLAFLLHRAIGD------QLTCMFIDQGFMRKG 265

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTIN-- 118
             +  R V     +  I    V+ +       K  T      R   +  I    +  N  
Sbjct: 266 --EPERLVQIFDQQFHIPVVYVNSRERFLTQLKGVTDPEEKRRLIGHEFIKVFEEESNRL 323

Query: 119 --ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFLRCR 173
                +     + D +E+          E+             +  +L   +  P  +  
Sbjct: 324 GPFDYLAQGTLYPDVIESADSNVDPQTGERVAVKIKSHHNVGGLPKNLRFKLVEPLRKLF 383

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 384 KDEVRKLARAIGLP 397


>gi|238796003|ref|ZP_04639515.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969]
 gi|238720208|gb|EEQ12012.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969]
          Length = 373

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 52/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    L         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q ++
Sbjct: 173 ELEKPEVRRIAEQLDL 188


>gi|315223915|ref|ZP_07865760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga ochracea F0287]
 gi|314946087|gb|EFS98091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga ochracea F0287]
          Length = 397

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 59/196 (30%), Gaps = 38/196 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS      L     +     +K           + +    DE  ++ D 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMK--------NWHDDSVTISDECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V                               RE ++ +  + A
Sbjct: 54  NDALLVAEKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLA 113

Query: 115 KTINATLIMTAHT-FDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            ++ A  + T H    +++E       R      E       +C      L+  +  P  
Sbjct: 114 LSLGADYVATGHYCRKEEIEINGKKIYRLLSGKDENKDQSYFLCQLSQDQLSKALF-PIG 172

Query: 171 RCRREDIRSFLLQRNI 186
             ++ ++R+    +++
Sbjct: 173 ELQKSEVRAIAKAQDL 188


>gi|312966389|ref|ZP_07780611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 2362-75]
 gi|312288842|gb|EFR16740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 2362-75]
          Length = 368

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGISGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|262371371|ref|ZP_06064689.1| GMP synthetase [Acinetobacter johnsonii SH046]
 gi|262313708|gb|EEY94757.1| GMP synthetase [Acinetobacter johnsonii SH046]
          Length = 522

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 218 LRQQIGDQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLN---EGE 268

Query: 72  YVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V D     + I   V+     +           P+       RE       E  K    
Sbjct: 269 QVMDMFAKNMGI--RVIRADAEERFLTALAGEVDPEKKRKIIGREFIEVFAEEARKLDGV 326

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + ++     +        +  DL   +  P     ++++R 
Sbjct: 327 NFLAQGTIYPDVIES---AATKNGKAHVIKSHHNVGGLPDDLAFELVEPIRDLFKDEVRR 383

Query: 180 FLLQRNISW 188
                 + +
Sbjct: 384 LGTTLGLPF 392


>gi|225868533|ref|YP_002744481.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus equi subsp.
           zooepidemicus]
 gi|259647689|sp|C0MFC7|GUAA_STRS7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225701809|emb|CAW99237.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus equi subsp.
           zooepidemicus]
          Length = 520

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 219 IRKTVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKNEGD--- 269

Query: 72  YVSDVCSRLR--IAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTIN 118
               V   L      +++    SK    L+A              E  Y    E +K   
Sbjct: 270 ---QVMEMLGGRFGLNIIRVDASKRFLDLLAGVEDPEKKRKIIGNEFVYVFDDEASKLEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRNIS 187
           +      + 
Sbjct: 381 ALGTALGMP 389


>gi|24374174|ref|NP_718217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella oneidensis MR-1]
 gi|30173411|sp|Q8CX40|MNMA_SHEON RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|24348681|gb|AAN55661.1|AE015704_12 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella oneidensis MR-1]
          Length = 372

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 40/196 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A ++++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMK--------NWEEDDNDEYCAAAEDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             ++A  I   H     D  +  T  +R   +  ++   L  +    +         P  
Sbjct: 122 DILDADYIAMGHYVRRRDNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q  +
Sbjct: 178 ELEKHEVREIAKQMGL 193


>gi|241999384|ref|XP_002434335.1| GMP synthase, putative [Ixodes scapularis]
 gi|215497665|gb|EEC07159.1| GMP synthase, putative [Ixodes scapularis]
          Length = 696

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R  V  + +L+ VSGG DS      LH  L +      +  A+ +D+   R+    E 
Sbjct: 232 YIRRTVGNSKVLMLVSGGVDSTVCAALLHKALRED-----QVIALHIDNGFMRKE---ES 283

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V     +L +   VV 
Sbjct: 284 VQVEQSLRQLGLRLRVVD 301


>gi|126661854|ref|ZP_01732853.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Flavobacteria bacterium BAL38]
 gi|126625233|gb|EAZ95922.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase
           [Flavobacteria bacterium BAL38]
          Length = 395

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 25/128 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHC-LRETAKDEVRYVS 74
             ++V +SGG DS      L     +            ++++ + C   E + D    V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISNECPWLEDSND-ALLV- 59

Query: 75  DVCSRLRIAHSVVSWKNSKPQT-------GLMAAA---------REARYALISEHAKTIN 118
               +L I    V       +                       RE ++ +  + A ++ 
Sbjct: 60  --AEKLGIPFQTVDLSEQYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIAMSLG 117

Query: 119 ATLIMTAH 126
           A  + T H
Sbjct: 118 ADYVATGH 125


>gi|299065982|emb|CBJ37163.1| ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase)
           [Ralstonia solanacearum CMR15]
          Length = 314

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H   E      + V+++ +RL +
Sbjct: 43  FSGGKDSIVMLHLALKAFRLGDRKIELPFPLVHIDTGHNYSEVIAFRDQRVAELGARLVV 102

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  ++     +M     D
Sbjct: 103 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIESHGFDALMGGARRD 150


>gi|260779096|ref|ZP_05887988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605260|gb|EEX31555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 373

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 56/198 (28%), Gaps = 41/198 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
               ++V +SGG DS      L           +K           E        A +++
Sbjct: 9   SKKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDL 60

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    +++             A  +  R               A +   
Sbjct: 61  ADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 120

Query: 114 AKTINATLIMTAH----TFDDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + ++A  I   H    TF D  E    +R      ++   L  +    +         P
Sbjct: 121 DEVLDADYIAMGHYVRRTFPDNGEKPQMLRGLDGNKDQSYFLYTLSSDQIARS----LFP 176

Query: 169 FLRCRREDIRSFLLQRNI 186
                + ++R    ++++
Sbjct: 177 VGELEKPEVRRIAEEQDL 194


>gi|262306045|gb|ACY45615.1| gln amidotransferase [Euperipatoides rowelli]
          Length = 197

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R+ V    +L+ VSGG DS      LH  L +      +  A+ +D+   R   K E 
Sbjct: 36  YIRNTVKDNKVLMLVSGGVDSTVCAALLHKALKED-----QVIAVHIDNGFMR---KKES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V    +++ +   VV+
Sbjct: 88  EQVEKSLNKIGLKLKVVN 105


>gi|325689720|gb|EGD31724.1| GMP synthase [Streptococcus sanguinis SK115]
          Length = 520

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+V 
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 71  ---------RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
                      +    ++            S P+        E  Y    E +K  +   
Sbjct: 273 DMLGGKFGLNIIKAYAAK---RFLDKLAGVSDPEQKRKIIGNEFVYVFDDEASKLKDVKF 329

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 330 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRALG 383

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 384 TELGMPDEIVWR 395


>gi|296876515|ref|ZP_06900566.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432508|gb|EFH18304.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus parasanguinis
           ATCC 15912]
          Length = 521

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 34/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR   KDE  
Sbjct: 220 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLR---KDEAD 270

Query: 72  YVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V D +  +  +  ++V    +K           P+        E  Y    E +K  + 
Sbjct: 271 QVMDMLGGKFGL--NIVKADAAKRFLDKLAGVSDPEKKRKIIGNEFVYVFDDEASKLKDV 328

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +  D+   +  P     ++++R+
Sbjct: 329 KFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRA 382

Query: 180 FLLQRN----ISWC 189
              +      I W 
Sbjct: 383 LGTELGMPDHIVWR 396


>gi|288928273|ref|ZP_06422120.1| ExsB protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331107|gb|EFC69691.1| ExsB protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 217

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 58/204 (28%)

Query: 19  PAHILVAVSGGSDSMGLLI------AL---HSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
              ++V VSGG DS+ LL       AL       S+ +  ++  +A+             
Sbjct: 2   KDSVIV-VSGGMDSVTLLYEKKDEIALGISFDYGSNHNHNELPLAALH------------ 48

Query: 70  VRYVSDVCSRLRIAHSVVS--WKNSKPQTGLMAAARE-----------------AR---- 106
                  C RL IAH V+   + +   ++ L+ +                     R    
Sbjct: 49  -------CQRLGIAHVVIPLGFMHQYFKSSLLESGESIPDGSYDEENMKSTVVPFRNGVM 101

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            A+ +  A++   T ++ A+   D   T+Y     D   + +              + + 
Sbjct: 102 LAVAAGIAESNGLTKVLIANHGGDH--TIY----PDCRPEFIAAMDAAVEAGTFARVRVV 155

Query: 167 RPFLRCRREDIRSFLLQRNISWCE 190
            P+    + DI        I + E
Sbjct: 156 APYTNISKADIARRGRALGIDYAE 179


>gi|300774572|ref|ZP_07084435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chryseobacterium gleum ATCC 35910]
 gi|300506387|gb|EFK37522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chryseobacterium gleum ATCC 35910]
          Length = 395

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 60/202 (29%), Gaps = 51/202 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            I+V +SGG DS      L     +      R++     +            +DE  ++ 
Sbjct: 2   KIVVGLSGGVDSSVTAYLLQQQGHEVVALFMRNWNDASVTL-----------EDECPWIE 50

Query: 75  D------VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISE 112
           D      V  +L I   V+       +                       RE ++ +  +
Sbjct: 51  DSNDALMVAQKLGIPFQVIDMSELYKERIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMK 110

Query: 113 HAKTINATLIMTAH------TFDDQL-ETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            A ++ A  + T H      TFD+   E    +  + +  ++   L  +    L      
Sbjct: 111 TAMSLGADKVATGHYARVTSTFDENGKEIFHLLAGKDNNKDQSYFLCQLSQDQLSKA--- 167

Query: 165 ISRPFLRCRREDIRSFLLQRNI 186
              P     +  +R    +  +
Sbjct: 168 -LFPIGELTKPQVREIAKEIGL 188


>gi|223940664|ref|ZP_03632505.1| ExsB family protein [bacterium Ellin514]
 gi|223890676|gb|EEF57196.1| ExsB family protein [bacterium Ellin514]
          Length = 275

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 42/140 (30%), Gaps = 25/140 (17%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M L  +  +R  + S       LVA SGG DS+ L      VL  +S   I         
Sbjct: 1   MTLDKLNRLRNVISSY---GSCLVAYSGGVDSVFLAKVAKDVLGKKSLAAI--------- 48

Query: 61  CLRETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALI 110
                +    + E+    ++  R  I   +V  K     +            +   +  +
Sbjct: 49  ---ADSPSLPRRELEEALEIARRFEIPVRIVRTKEFDNSSYLANPNNRCYFCKHELFTEL 105

Query: 111 SEHAKTINATLIMTAHTFDD 130
              AK     +I       D
Sbjct: 106 EPLAKAEQFAVIAYGENASD 125


>gi|146283337|ref|YP_001173490.1| GMP synthase [Pseudomonas stutzeri A1501]
 gi|145571542|gb|ABP80648.1| GMP synthase [Pseudomonas stutzeri A1501]
 gi|327481729|gb|AEA85039.1| GMP synthase [Pseudomonas stutzeri DSM 4166]
          Length = 526

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V  A++L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 222 VRAQVGDANVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 275

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG-LMAAA----------REARYALISEHAKTINAT 120
             +     + +   V+         G L   A          R       +E +K  N  
Sbjct: 276 --AMFAENMGVK--VIRADAEAQFLGNLEGEADPEKKRKIIGRTFIDVFDAEASKLPNIQ 331

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  ++NL +  P     ++++R  
Sbjct: 332 FLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRKI 388

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 389 GLELGLPY 396


>gi|14195297|sp|Q9RTK1|MNMA_DEIRA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 380

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 32/195 (16%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
                +L A+SGG DS      L       + +   F        + D C    A  E R
Sbjct: 17  AQGERVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAYEAR 76

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAK 115
            V     ++ +   ++     ++       L   AR            + ++  + + AK
Sbjct: 77  RV---AEQVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAK 133

Query: 116 TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            +    + T H      + Q E  + R      ++   L G       D   +I  P   
Sbjct: 134 MLGCRYVATGHYVKRVDNAQGEVEFHRGDDPRKDQTYFLWG----TPRDALPYILFPVGE 189

Query: 172 CRREDIRSFLLQRNI 186
             +  +R    +R +
Sbjct: 190 LEKPQVREIAAERGL 204


>gi|318606118|emb|CBY27616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 373

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L     T+ ++       P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVNGKSRLLRGLDGNKDQSYFLY----TLSHEQLTQSLFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q  +
Sbjct: 173 ELEKPEVRRIAEQLEL 188


>gi|309790491|ref|ZP_07685051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oscillochloris trichoides DG6]
 gi|308227478|gb|EFO81146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oscillochloris trichoides DG6]
          Length = 359

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 44/199 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------- 72
           A I+VA+SGG DS      LH             + + V   L +   D +         
Sbjct: 2   ATIMVAMSGGVDSSLTAALLHEQGH---------TVVGVTMHLWDGDDDHLAESLCCSLE 52

Query: 73  ----VSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISE 112
                  VC++L I + V +++    +                    A  RE ++  +  
Sbjct: 53  MTASARRVCNQLGIPYYVFNYQREFRRAVVDAFVHAYSHGYTPNPCIACNREIKFRALLA 112

Query: 113 HAKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            A  +    + T H       D  +   +R+     ++   L  +  T L      +  P
Sbjct: 113 RANQLGYDYVATGHYVRRRVTDANQYKLLRAHDHGKDQSYVLYMLGQTELAR----LLFP 168

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ ++R+    R + 
Sbjct: 169 LGEYQKSEVRAMATARGLE 187


>gi|157693155|ref|YP_001487617.1| tRNA-specific 2-thiouridylase MnmA [Bacillus pumilus SAFR-032]
 gi|194017112|ref|ZP_03055724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pumilus ATCC 7061]
 gi|166991121|sp|A8FFP0|MNMA_BACP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157681913|gb|ABV63057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pumilus SAFR-032]
 gi|194010980|gb|EDW20550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus pumilus ATCC 7061]
          Length = 372

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 63/197 (31%), Gaps = 38/197 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PEDTRVVVGMSGGVDSSVAALMLKEQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YEDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTFD-DQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A ++ A  + T H    D+   E   +R      ++   L+ +    L      +  P  
Sbjct: 117 ALSLGADYLATGHYARVDRTGDEVKMLRGLDANKDQTYFLNQLTQEQL----DKVMFPIG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              ++ +R    +  ++
Sbjct: 173 DLEKKRVRELAKEAELA 189


>gi|120553049|ref|YP_957400.1| exsB protein [Marinobacter aquaeolei VT8]
 gi|189038922|sp|A1TWU4|QUEC_MARAV RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|120322898|gb|ABM17213.1| preQ(0) biosynthesis protein QueC [Marinobacter aquaeolei VT8]
          Length = 221

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS  LL              +K  A+S ++  R   + +V   +DVC    
Sbjct: 5  VVVIYSGGMDSFTLLHLA-------RARGLKVHALSFNYGQRHVRELDVA--ADVCRAEG 55

Query: 82 IAHSVVSWKN 91
          I H V+  + 
Sbjct: 56 IPHKVIDIRA 65


>gi|323142167|ref|ZP_08077004.1| TIGR00268 family protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413359|gb|EFY04241.1| TIGR00268 family protein [Phascolarctobacterium sp. YIT 12067]
          Length = 277

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 36/200 (18%)

Query: 3   LSPIESVRFFV--RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           L      +F V  + L     +LVA SGG DS  LL A H  L D++      S +    
Sbjct: 7   LEIQAEAKFAVLQQELRRLGSVLVAFSGGVDSTFLLQAAHLTLGDKALAVTARSGVV--- 63

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREARYALISEHAK-- 115
                   ++    + C +  I H    +   +               +  L S   +  
Sbjct: 64  ---PQ--RDIAEAEEFCRKQGICHLYFDFDELQVPGFAENPPDRCYICKKTLFSNFLRIA 118

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCR 173
             N  ++      DD              +   GL  + +       L +  P       
Sbjct: 119 QENGAVLCEGSNMDDL------------GDYRPGLRALAE-------LKVQSPLRTAELT 159

Query: 174 REDIRSFLLQRNISWCEDPS 193
           +E+IR    +  +   + PS
Sbjct: 160 KEEIRLLSHKLQLPTWDKPS 179


>gi|114771028|ref|ZP_01448468.1| GMP synthase [alpha proteobacterium HTCC2255]
 gi|114548310|gb|EAU51196.1| GMP synthase [alpha proteobacterium HTCC2255]
          Length = 519

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 20/184 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++  +SGG DS    + LH  + D      + + + VDH  LR    +EV 
Sbjct: 216 IKETVGDNQVICGLSGGVDSSVAAVLLHEAIGD------QLTCVFVDHGLLRMGEAEEV- 268

Query: 72  YVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAR---EARYALISEHAKTINATLIM 123
            V+       +       +         Q+      +   +    +  ++AK I A  + 
Sbjct: 269 -VTMFRDHYNMKLIHADEQELFLGQLDGQSDPETKRKIIGKLFIDVFDKYAKPIGAKFLA 327

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+V   S        +        +   +++ +  P     ++++R    +
Sbjct: 328 QGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMDMALVEPLRELFKDEVRELGKE 384

Query: 184 RNIS 187
             + 
Sbjct: 385 LGLP 388


>gi|229505277|ref|ZP_04394787.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae BX 330286]
 gi|229511053|ref|ZP_04400532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|229518173|ref|ZP_04407617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC9]
 gi|229608296|ref|YP_002878944.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae MJ-1236]
 gi|254848257|ref|ZP_05237607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MO10]
 gi|255745540|ref|ZP_05419488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholera CIRS 101]
 gi|262158386|ref|ZP_06029502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae INDRE 91/1]
 gi|262170249|ref|ZP_06037936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC27]
 gi|229344888|gb|EEO09862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC9]
 gi|229351018|gb|EEO15959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|229357500|gb|EEO22417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae BX 330286]
 gi|229370951|gb|ACQ61374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MJ-1236]
 gi|254843962|gb|EET22376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MO10]
 gi|255736615|gb|EET92012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholera CIRS 101]
 gi|262021264|gb|EEY39978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC27]
 gi|262029827|gb|EEY48475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae INDRE 91/1]
          Length = 371

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 52/199 (26%), Gaps = 47/199 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 11  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 62

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 63  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 122

Query: 116 TINATLIMTAHTFDDQLETV--------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            ++A  I   H       T          +R      ++   L  +    +         
Sbjct: 123 VLDADYIAMGHYV---RRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVART----LF 175

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + ++R    ++ +
Sbjct: 176 PVGELEKPEVRRIAEEQGL 194


>gi|15806762|ref|NP_295482.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus radiodurans R1]
 gi|6459532|gb|AAF11314.1|AE002017_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus radiodurans R1]
          Length = 413

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 32/195 (16%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
                +L A+SGG DS      L       + +   F        + D C    A  E R
Sbjct: 50  AQGERVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAYEAR 109

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAK 115
            V     ++ +   ++     ++       L   AR            + ++  + + AK
Sbjct: 110 RV---AEQVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAK 166

Query: 116 TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            +    + T H      + Q E  + R      ++   L G       D   +I  P   
Sbjct: 167 MLGCRYVATGHYVKRVDNAQGEVEFHRGDDPRKDQTYFLWG----TPRDALPYILFPVGE 222

Query: 172 CRREDIRSFLLQRNI 186
             +  +R    +R +
Sbjct: 223 LEKPQVREIAAERGL 237


>gi|15641141|ref|NP_230773.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587442|ref|ZP_01677211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 2740-80]
 gi|121726243|ref|ZP_01679533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V52]
 gi|147673628|ref|YP_001216596.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O395]
 gi|153816924|ref|ZP_01969591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae NCTC 8457]
 gi|153822021|ref|ZP_01974688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|227081301|ref|YP_002809852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae M66-2]
 gi|14195282|sp|Q9KSX8|MNMA_VIBCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828983|sp|A5F2F2|MNMA_VIBC3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|9655600|gb|AAF94287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548362|gb|EAX58426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 2740-80]
 gi|121631189|gb|EAX63562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V52]
 gi|126512511|gb|EAZ75105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae NCTC 8457]
 gi|126520486|gb|EAZ77709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae B33]
 gi|146315511|gb|ABQ20050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae O395]
 gi|227009189|gb|ACP05401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae M66-2]
 gi|227012943|gb|ACP09153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae O395]
          Length = 372

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 52/199 (26%), Gaps = 47/199 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 12  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 64  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 123

Query: 116 TINATLIMTAHTFDDQLETV--------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            ++A  I   H       T          +R      ++   L  +    +         
Sbjct: 124 VLDADYIAMGHYV---RRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVART----LF 176

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + ++R    ++ +
Sbjct: 177 PVGELEKPEVRRIAEEQGL 195


>gi|326692579|ref|ZP_08229584.1| GMP synthase [Leuconostoc argentinum KCTC 3773]
          Length = 515

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R +V    +L+ +SGG DS  + + LH  + D      + ++I VDH  LR+    E  
Sbjct: 214 IREVVGDKKVLLGLSGGVDSSVVGVLLHKAIGD------QLTSIFVDHGLLRKN---EAA 264

Query: 72  YVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V + +  +  +    V  +          + P+        E       E AK  +   
Sbjct: 265 QVMEMMGKQFGLNIIKVDAQERFLSKLAGVTDPEQKRKIIGNEFIEVFNDEAAKLKDIDF 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 325 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRELG 378

Query: 182 LQRNISW 188
              ++  
Sbjct: 379 EALDMPH 385


>gi|320108171|ref|YP_004183761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Terriglobus saanensis SP1PR4]
 gi|319926692|gb|ADV83767.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Terriglobus saanensis SP1PR4]
          Length = 389

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 60/205 (29%), Gaps = 50/205 (24%)

Query: 21  HILVAVSGGSDSMGLLIALH-----------SVLSDRSFGKIKFSAISVDHCL------R 63
            I VA+SGG DS  +   L             + + R               +      R
Sbjct: 19  PIAVAMSGGVDSSAVAALLRSQGHTLVGLTLQLWNQRRLAG--------HEGMPEQVRGR 70

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVS------WKNSKPQTGLMAAAR----------EARY 107
             + D+V     V  +L I + VV+          KP      A R            ++
Sbjct: 71  CCSIDDVYDARRVAEQLEIPYYVVNQQERFEADVVKPFVAEYLAGRTPIPCTLCNNHLKF 130

Query: 108 ALISEHAKTINATLIMTAHTFD---DQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
             +   A+ I A  I T H      D      +  R      ++   L G+    L    
Sbjct: 131 DQLLLTARQIGAEKIATGHYARNEFDVARNRWILKRPTDRSKDQTYFLFGLTQPQLART- 189

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
                P     +  +R+   + +++
Sbjct: 190 ---LFPLGHMEKPAVRAMAEEHDLA 211


>gi|156059236|ref|XP_001595541.1| hypothetical protein SS1G_03630 [Sclerotinia sclerotiorum 1980]
 gi|154701417|gb|EDO01156.1| hypothetical protein SS1G_03630 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 548

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--- 59
             ++     +R+LV     +L AVSGG DS      +H  + DR      F A+ V+   
Sbjct: 218 KFVDQEIARIRTLVGEKGQVLGAVSGGVDSTVAAKLMHEAIGDR------FHAVLVNNGV 271

Query: 60  ------HCLRET-----------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
                   +R+T           A    +++  +   L    +   +   K      A A
Sbjct: 272 MRLNECEQVRKTLTENLGINLIVADASEQFLDGLA-GLDEPEAKRKFIGGKFIDVFEAEA 330

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           ++   A  +   K       +    + D +E++  +      +    + G+   +     
Sbjct: 331 KKIEDAAANSD-KAGKIEFFLQGTLYPDVIESISFKGPSATIKTHHNVGGLPKRMTEGQG 389

Query: 163 LWISRPFLRCRREDIRSFLLQRNISW 188
           L +  P     ++++R    +  I+ 
Sbjct: 390 LKLIEPLRELFKDEVRQLGRELGIAH 415


>gi|241589867|ref|YP_002979892.1| phosphoadenosine phosphosulfate reductase [Ralstonia pickettii 12D]
 gi|240868579|gb|ACS66238.1| phosphoadenosine phosphosulfate reductase [Ralstonia pickettii 12D]
          Length = 346

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 16/87 (18%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAK--DE 69
            L      +V  SGG DS+     LH +       +I+       H L   RE ++  D 
Sbjct: 26  DLASYDRFVVGFSGGKDSVA--CVLHLLEMGVDPNRIEL-----HHHLVDGREGSELMDW 78

Query: 70  ---VRYVSDVCSRLRIAHSVVSWKNSK 93
                Y +       +     SWK   
Sbjct: 79  PVTEAYCAAFARAFGLKLY-FSWKVGG 104


>gi|281415680|ref|ZP_06247422.1| GMP synthase (glutamine-hydrolyzing) [Micrococcus luteus NCTC 2665]
          Length = 539

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 24/191 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  +     +  +SGG DS     A+ + L  R+ G  + + + VDH L RE    E+ 
Sbjct: 225 IREQIGDKRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVYVDHGLMREGESAEIE 278

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM-----AAAREARYALISEHAKTINATLIMTAH 126
                      A  V+        + L       A R+          +   A +++ + 
Sbjct: 279 --QAFGEAHGGARLVMVDAREDFLSALAGVTDPEAKRKIIGERFIRTFEKAQADIVLESE 336

Query: 127 TFDDQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRRED 176
              D  E       T+Y          G       G    +  D+   +  P     +++
Sbjct: 337 HDPDATEVRFLVQGTLYPDVVESGGGDGAANIKRHGNVGGLPDDIEFELCEPLRELFKDE 396

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 397 VRAVGAELGLP 407


>gi|169632146|ref|YP_001705882.1| GMP synthase [Acinetobacter baumannii SDF]
 gi|169150938|emb|CAO99551.1| GMP synthetase (glutamine aminotransferase) [Acinetobacter
           baumannii]
          Length = 522

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LREQIGNEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+           +A             RE       E  K     
Sbjct: 272 --QMFAENMGI--RVIRADAEARFLNALAGVTDPEAKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|169797667|ref|YP_001715460.1| GMP synthase [Acinetobacter baumannii AYE]
 gi|184156475|ref|YP_001844814.1| GMP synthase [Acinetobacter baumannii ACICU]
 gi|213155539|ref|YP_002317584.1| GMP synthase [Acinetobacter baumannii AB0057]
 gi|215485021|ref|YP_002327262.1| GMP synthase [Acinetobacter baumannii AB307-0294]
 gi|239503066|ref|ZP_04662376.1| GMP synthase [Acinetobacter baumannii AB900]
 gi|260557610|ref|ZP_05829824.1| GMP synthase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|301345547|ref|ZP_07226288.1| GMP synthase [Acinetobacter baumannii AB056]
 gi|301512572|ref|ZP_07237809.1| GMP synthase [Acinetobacter baumannii AB058]
 gi|301596487|ref|ZP_07241495.1| GMP synthase [Acinetobacter baumannii AB059]
 gi|332852631|ref|ZP_08434285.1| GMP synthase domain protein [Acinetobacter baumannii 6013150]
 gi|332869346|ref|ZP_08438724.1| GMP synthase domain protein [Acinetobacter baumannii 6013113]
 gi|332875608|ref|ZP_08443420.1| GMP synthase domain protein [Acinetobacter baumannii 6014059]
 gi|169150594|emb|CAM88503.1| GMP synthetase (glutamine aminotransferase) [Acinetobacter
           baumannii AYE]
 gi|183208069|gb|ACC55467.1| GMP synthase, PP-ATPase domain/subunit [Acinetobacter baumannii
           ACICU]
 gi|193076025|gb|ABO10615.2| GMP synthetase [Acinetobacter baumannii ATCC 17978]
 gi|213054699|gb|ACJ39601.1| GMP synthase [Acinetobacter baumannii AB0057]
 gi|213986883|gb|ACJ57182.1| GMP synthase [Acinetobacter baumannii AB307-0294]
 gi|260408783|gb|EEX02087.1| GMP synthase domain-containing protein [Acinetobacter baumannii
           ATCC 19606]
 gi|322506343|gb|ADX01797.1| guaA [Acinetobacter baumannii 1656-2]
 gi|323516212|gb|ADX90593.1| GMP synthase [Acinetobacter baumannii TCDC-AB0715]
 gi|332729099|gb|EGJ60446.1| GMP synthase domain protein [Acinetobacter baumannii 6013150]
 gi|332732764|gb|EGJ63980.1| GMP synthase domain protein [Acinetobacter baumannii 6013113]
 gi|332736181|gb|EGJ67196.1| GMP synthase domain protein [Acinetobacter baumannii 6014059]
          Length = 522

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LREQIGNEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+           +A             RE       E  K     
Sbjct: 272 --QMFAENMGI--RVIRADAEARFLNALAGVTDPEAKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|21242742|ref|NP_642324.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|24638307|sp|Q8PL08|MNMA_XANAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21108220|gb|AAM36860.1| tRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 378

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 52/198 (26%), Gaps = 49/198 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            I+V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L I           W +         AA           RE ++    + 
Sbjct: 52  RRDAVAVCGVLGIPFHFRDFSGEYWSDVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPF 169
           A+ + A  I T H        V  R  R    +G          L+ L          P 
Sbjct: 112 AQALGAERIATGHYAQ-----VAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPI 166

Query: 170 LRCRREDIRSFLLQRNIS 187
               +  +R       + 
Sbjct: 167 GDLEKSTLRRIAQDAGLP 184


>gi|330718567|ref|ZP_08313167.1| GMP synthase [Leuconostoc fallax KCTC 3537]
          Length = 516

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 26/196 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  L
Sbjct: 206 SFIEEQIQIIREEVGDKKVLLGLSGGVDSSVVGVLLQRAIGD------QLTSIFVDHGLL 259

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R+    E   V   +  +  +    V  +          + P+        E       E
Sbjct: 260 RKN---EADAVMESLGGKFGLNIIKVDAQERFLTKLSGVTDPEKKRKIIGNEFIQVFNDE 316

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E            + +        +  D++  +  P  + 
Sbjct: 317 AQKLDGIDYLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMHFKLIEPLNKL 370

Query: 173 RREDIRSFLLQRNISW 188
            ++++R       +  
Sbjct: 371 FKDEVRELGEALGMPH 386


>gi|317498544|ref|ZP_07956838.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894237|gb|EFV16425.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 363

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 36/136 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETA 66
              ++V +SGG DS      L                 +  F + +         L   A
Sbjct: 2   KEKVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCC---GLS--A 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALI 110
            D+ R V+ +   + I H V++++                         A  R  ++  +
Sbjct: 57  VDDARRVAQM---IGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESL 113

Query: 111 SEHAKTINATLIMTAH 126
            +    I A  I T H
Sbjct: 114 LKRCLDIGADYIATGH 129


>gi|297243651|ref|ZP_06927582.1| GMP synthase [Gardnerella vaginalis AMD]
 gi|296888402|gb|EFH27143.1| GMP synthase [Gardnerella vaginalis AMD]
          Length = 520

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 64/194 (32%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + +      + + + VDH  LR+    EV 
Sbjct: 209 IREEVGDAQVICGLSGGVDSAVAAALVHKAIGN------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNS--KPQTGLMAAAR--------------EARYALISEHA 114
            V  D      I    V  ++       G+    R              +A+  +I E  
Sbjct: 260 QVKHDFVEATGIKLIAVDAEDDFLNALKGVSEPERKRKIIGEKFIRTFEKAQRQVIEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           K+      +   T   D +E+             +        +  DL   +  P     
Sbjct: 320 KSGAEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDLKFKLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|295096181|emb|CBK85271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 370

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADYIATGHYVRRADVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R      ++
Sbjct: 173 ELEKPEVRKIAEDLDL 188


>gi|188587455|ref|YP_001919000.1| ExsB family protein [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352142|gb|ACB86412.1| ExsB family protein [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 278

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 43/177 (24%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVCS 78
           +VA SGG DS  LL     VLSD      +  A++       T+    + E+    ++  
Sbjct: 31  VVAFSGGVDSTLLLKVAQEVLSD------QVLAVT------STSETIPERELDRAKELAE 78

Query: 79  RLRIAH------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +   H       ++  +  K         ++  ++ + E AK+   + ++    +DD  
Sbjct: 79  DIGAKHKTIYTEEILQEEFRKNPPNRCYYCKQELFSHLWEIAKSYGFSYVLDGSNYDD-- 136

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS 187
                       +   GL            L +  P       +ED+R    +  + 
Sbjct: 137 ----------GGDFRPGLEAAAK-------LQVQSPLKETGFTKEDVRQLSKELGLP 176


>gi|167765590|ref|ZP_02437654.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1]
 gi|167712775|gb|EDS23354.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1]
          Length = 363

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 41/136 (30%), Gaps = 36/136 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETA 66
              ++V +SGG DS      L                 +  F + +         L   A
Sbjct: 2   KEKVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCC---GLS--A 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALI 110
            D+ R V+ +   + I H V++++                         A  R  ++  +
Sbjct: 57  VDDARRVAQM---IGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESL 113

Query: 111 SEHAKTINATLIMTAH 126
            +    I A  I T H
Sbjct: 114 LKRCLDIGADYIATGH 129


>gi|46190409|ref|ZP_00121545.2| COG0519: GMP synthase, PP-ATPase domain/subunit [Bifidobacterium
           longum DJO10A]
 gi|189439565|ref|YP_001954646.1| GMP synthase [Bifidobacterium longum DJO10A]
 gi|312132974|ref|YP_004000313.1| guaa1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688874|ref|YP_004208608.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. infantis 157F]
 gi|322690849|ref|YP_004220419.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|189428000|gb|ACD98148.1| GMP synthase [Bifidobacterium longum DJO10A]
 gi|291517080|emb|CBK70696.1| GMP synthase (glutamine-hydrolyzing) [Bifidobacterium longum subsp.
           longum F8]
 gi|311773957|gb|ADQ03445.1| GuaA1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455705|dbj|BAJ66327.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|320460210|dbj|BAJ70830.1| GMP synthase/glutamine amidotransferase [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 520

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREQVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNS--KPQTGLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +       G+    R              +A+  ++ E  
Sbjct: 260 QVKHDFVAATGIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 320 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPEDIKFQLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|301167152|emb|CBW26731.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteriovorax marinus SJ]
          Length = 382

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 64/218 (29%), Gaps = 43/218 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           ++V +SGG DS      L         +       + +             +  E   V 
Sbjct: 18  VIVGMSGGVDSSVCAAVLKEQGYNVIGMFMKNWEEQDENGVC--------QSSKEYADVI 69

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAA----------REARYALISEHAKTIN 118
            VC +L I +  V +                 A           RE ++ +    A  + 
Sbjct: 70  SVCEKLDIPYYSVDFVKEYRDNVFQHFLDEYEAGFTPNPDILCNREIKFKVFLNKALELG 129

Query: 119 ATLIMTAHTFDDQLETVYM----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  + T H      + + +       +     G   +    T+  +    +  P     +
Sbjct: 130 ADYLATGH----YCQNILIDGENHLVKGNDP-GKDQTYFLYTMKKEKLEHVHFPIGHLPK 184

Query: 175 EDIRSFLLQRNIS--WCEDPSNTDDRFERVRVRRFVRD 210
            ++R    + ++S    +D +      ER   + F+ +
Sbjct: 185 TEVRKLAEKFDLSTKHKKDSTGICFIGERNF-KNFLSN 221


>gi|257452558|ref|ZP_05617857.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|317059098|ref|ZP_07923583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313684774|gb|EFS21609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
          Length = 350

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 47/206 (22%), Gaps = 46/206 (22%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R       + VA+SGG DS  +   L           +                ++    
Sbjct: 7   REENKKVRVGVALSGGVDSSTVAYLLKK--QGYDIFGVTMKTCH---------AEDAD-A 54

Query: 74  SDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISEHAKTI 117
             VC  L I H V               V                R  ++  + +     
Sbjct: 55  KKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGKLLDFILGQ 114

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRRED 176
            A  + T H       T  +       + G          +  +    I  P     +  
Sbjct: 115 GAQYMATGHY------TKLVDGHLSVGDDGGKDQVYFLSQVPKEKLKKIIFPVGELEKIQ 168

Query: 177 IRSFLLQRN-----------ISWCED 191
           +R    +             I + ED
Sbjct: 169 VRELAKELGVRVYAKKDSQEICFVED 194


>gi|239994884|ref|ZP_04715408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alteromonas macleodii ATCC 27126]
          Length = 369

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A ++++ 
Sbjct: 10  KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNDEYCAAAEDLKD 61

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              V  +L I    +++                +  R               A +   A+
Sbjct: 62  AQAVADKLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 121

Query: 116 TINATLIMTAH 126
            + A  I T H
Sbjct: 122 DLGADYIATGH 132


>gi|167623646|ref|YP_001673940.1| tRNA-specific 2-thiouridylase MnmA [Shewanella halifaxensis
           HAW-EB4]
 gi|189040508|sp|B0TQ02|MNMA_SHEHH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167353668|gb|ABZ76281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella halifaxensis HAW-EB4]
          Length = 371

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 58/198 (29%), Gaps = 45/198 (22%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L           +K           E        A D+++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMK--------NWEEDDTDEYCAAADDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++ +           A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY---DLNLWISR---P 168
           + ++A  I   H        V  R     ++   G+ G  D   +     +  ++R   P
Sbjct: 122 EILDADYIAMGHY-------VRRRDIDGTSQMLRGIDGNKDQSYFLYTLGHEQVARSLFP 174

Query: 169 FLRCRREDIRSFLLQRNI 186
                + ++R    +  +
Sbjct: 175 VGELEKSEVREIAKEMGL 192


>gi|158299176|ref|XP_319294.4| AGAP010139-PA [Anopheles gambiae str. PEST]
 gi|157014240|gb|EAA13830.4| AGAP010139-PA [Anopheles gambiae str. PEST]
          Length = 679

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 15/86 (17%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVDHC---L 62
           E    ++R  V  + +L+ VSGG DS      L H++  D      +  A+ +D+    L
Sbjct: 218 EECIAYIREHVGNSKVLLLVSGGVDSTVCAALLRHALKPD------QVIAVHIDNGFMRL 271

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS 88
            E+A      V      L +   V +
Sbjct: 272 NESAN-----VEKSLRELGVDLFVKN 292


>gi|254291552|ref|ZP_04962342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae AM-19226]
 gi|150422504|gb|EDN14461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae AM-19226]
          Length = 372

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 39/195 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 12  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 64  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 123

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISR---PFLR 171
            ++A  I   H       T     ++    +G+  +      LY L +  ++R   P   
Sbjct: 124 VLDADYIAMGHYV---RRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGE 180

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 181 LEKPEVRRIAEEQGL 195


>gi|153214224|ref|ZP_01949259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 1587]
 gi|153802718|ref|ZP_01957304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-3]
 gi|153828671|ref|ZP_01981338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 623-39]
 gi|254225518|ref|ZP_04919128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V51]
 gi|297578730|ref|ZP_06940658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC385]
 gi|124115473|gb|EAY34293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 1587]
 gi|124121758|gb|EAY40501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-3]
 gi|125621988|gb|EAZ50312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae V51]
 gi|148875824|gb|EDL73959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 623-39]
 gi|297536324|gb|EFH75157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae RC385]
          Length = 372

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 39/195 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 12  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 64  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 123

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISR---PFLR 171
            ++A  I   H       T     ++    +G+  +      LY L +  ++R   P   
Sbjct: 124 VLDADYIAMGHYV---RRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGE 180

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 181 LEKPEVRRIAEEQGL 195


>gi|229515510|ref|ZP_04404969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TMA 21]
 gi|229520442|ref|ZP_04409867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TM 11079-80]
 gi|229525739|ref|ZP_04415144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae bv. albensis VL426]
 gi|229529783|ref|ZP_04419173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 12129(1)]
 gi|229333557|gb|EEN99043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae 12129(1)]
 gi|229339320|gb|EEO04337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae bv. albensis VL426]
 gi|229342540|gb|EEO07533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TM 11079-80]
 gi|229347279|gb|EEO12239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae TMA 21]
 gi|327483833|gb|AEA78240.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Vibrio cholerae LMA3894-4]
          Length = 371

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 39/195 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 11  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 62

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 63  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 122

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISR---PFLR 171
            ++A  I   H       T     ++    +G+  +      LY L +  ++R   P   
Sbjct: 123 VLDADYIAMGHYV---RRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGE 179

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 180 LEKPEVRRIAEEQGL 194


>gi|255526450|ref|ZP_05393361.1| GMP synthase, large subunit [Clostridium carboxidivorans P7]
 gi|296184824|ref|ZP_06853235.1| GMP synthase (glutamine-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|255509832|gb|EET86161.1| GMP synthase, large subunit [Clostridium carboxidivorans P7]
 gi|296050606|gb|EFG90029.1| GMP synthase (glutamine-hydrolyzing) [Clostridium carboxidivorans
           P7]
          Length = 510

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 65/187 (34%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            ++  V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V
Sbjct: 208 AIKEKVGDKKVICALSGGVDSSVAAVLVHRAIGK------QLTCIFVDHGLLRKDEGDQV 261

Query: 71  RYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATL 121
             +     +  +    V+ K+       G+    R+ +        +  E A  +   + 
Sbjct: 262 ETIFK--KQFDMNLIRVNAKDRFLGKLAGVSDPERKRKIIGEEFIRVFEEEANKLGEISF 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R+  
Sbjct: 320 LVQGTIYPDVVE------SGTNTSATIKSHHNVGGLPEDMQFKLIEPLRELFKDEVRAVG 373

Query: 182 LQRNISW 188
            +  I  
Sbjct: 374 EELGIPH 380


>gi|126640233|ref|YP_001083217.1| GMP synthase [Acinetobacter baumannii ATCC 17978]
          Length = 485

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 181 LREQIGNEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 234

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+           +A             RE       E  K     
Sbjct: 235 --QMFAENMGI--RVIRADAEARFLNALAGVTDPEAKRKIIGREFIEVFAEEARKLDGVK 290

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 291 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 347

Query: 181 LLQRNISW 188
                +  
Sbjct: 348 GTTLGLPH 355


>gi|270156742|ref|ZP_06185399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae D-4968]
 gi|289164811|ref|YP_003454949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae NSW150]
 gi|269988767|gb|EEZ95021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae D-4968]
 gi|288857984|emb|CBJ11844.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Legionella longbeachae NSW150]
          Length = 361

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 59/195 (30%), Gaps = 40/195 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
            A +++ +SGG DS      L           +K           E    +  +      
Sbjct: 2   KAKVIIGMSGGVDSSVAAWLLQETGYQVEGLFMKNW---------EQDDKDG-FCPAAQD 51

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEH 113
                 VC++LRI     ++     Q             R          E ++    +H
Sbjct: 52  LADAQAVCNQLRIPLHTTNFSKEYWQNVFTYFLSEYEKGRTPNPDVLCNKEIKFKAFLDH 111

Query: 114 AKTINATLIMTAHTFDDQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           A T+ A  I T H   + +  +T ++   +D  +         D       L+   P   
Sbjct: 112 ALTLGADYIATGHYAKNVIDGDTGFLFKAKDRDKDQTYFLHAVDPKALGKTLF---PIGD 168

Query: 172 CRREDIRSFLLQRNI 186
             + +IR F  +  +
Sbjct: 169 YTKTEIREFAQKLGL 183


>gi|120613352|ref|YP_973030.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax citrulli AAC00-1]
 gi|166991120|sp|A1TWB8|MNMA_ACIAC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120591816|gb|ABM35256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax citrulli AAC00-1]
          Length = 378

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 51/208 (24%), Gaps = 60/208 (28%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               I+V +SGG DS      L     +     +K               D+  Y     
Sbjct: 5   PKQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNW----------EDDDDSEYCSSNV 54

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + I    V++             RE                       +
Sbjct: 55  DFVDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLD 114

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI--LYDLNLWISR--- 167
           HA  + A  I T H              R       GL  +   +    D + ++ R   
Sbjct: 115 HAMRVGAEKIATGHYA------------RVRHNPATGLHELLKGLDPAKDQSYFLHRLNQ 162

Query: 168 --------PFLRCRREDIRSFLLQRNIS 187
                   P    R+ ++R    +  + 
Sbjct: 163 SQLSRTLFPVGELRKTEVRRIAEEIGLP 190


>gi|116493418|ref|YP_805153.1| PP family ATPase [Pediococcus pentosaceus ATCC 25745]
 gi|116103568|gb|ABJ68711.1| ATP-utilizing enzyme of the PP-loop superfamily [Pediococcus
           pentosaceus ATCC 25745]
          Length = 276

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 55/195 (28%), Gaps = 42/195 (21%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
                 ++ L     + +A SGG DS  LL            GK    A+ V+      +
Sbjct: 6   AKENNLIKDLASKQRVAIAYSGGIDSTYLLKVAVD-----ELGKDNVLAMVVN------S 54

Query: 67  ----KDEVRYVSDVCSRLRI--------AHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
                DE     ++   L            +      + P++   +   +  Y  I + A
Sbjct: 55  ELFLDDEYNKALELAKDLGANAMGVSMSELADERIAANTPESWYYSK--QLLYRTIKKAA 112

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                 +++     DD  +       R          GM      +  +  S       +
Sbjct: 113 AEKGFDIVLDGMIMDDNAD------FR---------PGMKART--EEGIVSSLQDADLYK 155

Query: 175 EDIRSFLLQRNISWC 189
            +IR     R IS  
Sbjct: 156 SEIRELAKDRGISNW 170


>gi|332982204|ref|YP_004463645.1| GMP synthase [Mahella australiensis 50-1 BON]
 gi|332699882|gb|AEE96823.1| GMP synthase (glutamine-hydrolyzing) [Mahella australiensis 50-1
           BON]
          Length = 511

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 71/197 (36%), Gaps = 29/197 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  V     L A+SGG DS    + +H  +  R       + I VDH L 
Sbjct: 200 SFIEDTVASIKERVGNGSALCALSGGVDSSVAAMLVHKAIGRR------LTCILVDHGLM 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHA 114
           R+   +EV  V     +  +   VV   +       G+    R+ +        +  E A
Sbjct: 254 RQDEVEEVERVFK--EQFNVNLVVVDASDRFLSKLKGVTDPERKRKIIGEEFIRVFEEQA 311

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFL 170
           K +     ++    + D +E+      R  A        + G+ + I +     I  P  
Sbjct: 312 KALGHIDYLVQGTIYPDVIES-----GRGDAAVIKSHHNVGGLPEDIDFKG---IIEPLR 363

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   L+  + 
Sbjct: 364 NLFKDEVRKVGLELGMP 380


>gi|329954341|ref|ZP_08295433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
 gi|328527609|gb|EGF54602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
          Length = 365

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 35/191 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVDHCLRETAKDEVRYVSDVC 77
           +I V +SGG DS  ++  L       S   IK     A  +D     +A++++   S V 
Sbjct: 2   NIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIGKDDADYMD----CSAEEDLEMASAVA 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKTIN--ATLI 122
            R  ++  VV             A  + R                     + +       
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIEKVRRGFTPNPDVMCNKLIKFGCFEQQVGKDFDFT 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLRCRRED 176
            T H       TV           G  L  + D   +   +       +  P     + +
Sbjct: 118 ATGHYAT----TVLRN---GKTWLGTALDPIKDQTDFLAQIDYLQVSKLMFPLGGLMKRE 170

Query: 177 IRSFLLQRNIS 187
           +R   L+  + 
Sbjct: 171 VRDIALKAKLP 181


>gi|170077976|ref|YP_001734614.1| GMP synthase [Synechococcus sp. PCC 7002]
 gi|226739757|sp|B1XLR5|GUAA_SYNP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|169885645|gb|ACA99358.1| GMP synthetase [Synechococcus sp. PCC 7002]
          Length = 540

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 68/194 (35%), Gaps = 22/194 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++R  +R+ V    +L+A+SGG DS  L   LH  + D      + + + +D    R+ 
Sbjct: 225 EAIRE-IRARVGDQRVLLALSGGVDSSTLAFLLHQAIGD------QLTCMFIDQGFMRKG 277

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTI 117
             +  R V     +  I  + ++ ++      K  T      R   +       E +K +
Sbjct: 278 --EPERLVEIFDEQFHIPVAYINARDRFIDKLKGVTDPEEKRRLIGHEFIAVFEEESKRL 335

Query: 118 N-ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFLRCR 173
                +     + D +E+          E+             +  DL   +  P  +  
Sbjct: 336 GPFDYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSHHNVGGLPEDLRFKLVEPLRKLF 395

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 396 KDEVRKVAASIGLP 409


>gi|332311498|gb|EGJ24593.1| GMP synthase [glutamine-hydrolyzing] [Listeria monocytogenes str.
           Scott A]
          Length = 518

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|330994458|ref|ZP_08318383.1| GMP synthase [Gluconacetobacter sp. SXCC-1]
 gi|329758458|gb|EGG74977.1| GMP synthase [Gluconacetobacter sp. SXCC-1]
          Length = 494

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + I VD   LR    DEV 
Sbjct: 190 IRQQVGKGRVICGLSGGVDSSVAAVLIHQAIGD------QLTCIFVDPGILRAGEADEV- 242

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            +     R  I        +         S P+       R        E AK   A  +
Sbjct: 243 -IRTFRDRFNIHLIHRDASDLFLNALEGVSDPEIKRKTIGRLFIEVFEEEAAKLGGADFL 301

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + + +  P     ++++R    
Sbjct: 302 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMQLVEPLRELFKDEVRELGR 358

Query: 183 QRNIS 187
           + +I 
Sbjct: 359 EMDIP 363


>gi|315302615|ref|ZP_07873423.1| GMP synthase (glutamine-hydrolyzing) [Listeria ivanovii FSL F6-596]
 gi|313629015|gb|EFR97340.1| GMP synthase (glutamine-hydrolyzing) [Listeria ivanovii FSL F6-596]
          Length = 416

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|313624201|gb|EFR94264.1| GMP synthase (glutamine-hydrolyzing) [Listeria innocua FSL J1-023]
          Length = 514

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 264 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|313619458|gb|EFR91158.1| GMP synthase (glutamine-hydrolyzing) [Listeria innocua FSL S4-378]
          Length = 518

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|307570623|emb|CAR83802.1| GMP synthase [Listeria monocytogenes L99]
 gi|313609403|gb|EFR85008.1| GMP synthase (glutamine-hydrolyzing) [Listeria monocytogenes FSL
           F2-208]
          Length = 518

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|255520350|ref|ZP_05387587.1| GMP synthase [Listeria monocytogenes FSL J1-175]
          Length = 514

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + +      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGE------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 264 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|226223707|ref|YP_002757814.1| GMP synthetase [Listeria monocytogenes Clip81459]
 gi|225876169|emb|CAS04875.1| Putative GMP synthetase [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 518

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|224536253|ref|ZP_03676792.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522139|gb|EEF91244.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 359

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 51/195 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LV +SGG DS    + L           +                DE      + 
Sbjct: 4   PDKRVLVGMSGGIDSTATCLMLKE--QGYEIVGLTMWVW----------GDEPVEARQLA 51

Query: 78  SRLRIAHSVVSWKNSKPQ---TGLMAAAREAR-------------YALISEHAKTINATL 121
             + I H V   + +  +      +    + R             + +++E A  +    
Sbjct: 52  GSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKLGCAF 111

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFL 170
           I T H              R   + G       D    D + ++ R           P  
Sbjct: 112 ISTGH------------YSRLEEKNGKIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLG 159

Query: 171 RCRREDIRSFLLQRN 185
              +  +R +L ++ 
Sbjct: 160 TYTKLQVREYLREKG 174


>gi|224500529|ref|ZP_03668878.1| GMP synthase [Listeria monocytogenes Finland 1988]
          Length = 514

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 264 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|218129687|ref|ZP_03458491.1| hypothetical protein BACEGG_01266 [Bacteroides eggerthii DSM 20697]
 gi|317475981|ref|ZP_07935236.1| GMP synthase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988099|gb|EEC54423.1| hypothetical protein BACEGG_01266 [Bacteroides eggerthii DSM 20697]
 gi|316907913|gb|EFV29612.1| GMP synthase domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 517

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 27/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIETTVAQLKEQLGDDKVVLGLSGGVDSSVAAVLLNRAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAK 115
           R+     V +  D  C  L +     S K      G+    R+ +        +  E A 
Sbjct: 252 RKNEFKNVLH--DYECLGLNVVGVDASAKFFAELAGVTEPERKRKIIGKGFIDVFDEEAH 309

Query: 116 TI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRC 172
            I +   +     + D +E++        +  G  +        +   ++L +  P    
Sbjct: 310 KIKDVKWLAQGTIYPDCIESL--------SITGTVIKSHHNVGGLPEKMHLKLCEPLRLL 361

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 362 FKDEVRRVGRELGMP 376


>gi|217964817|ref|YP_002350495.1| GMP synthase (glutamine-hydrolyzing) (Glutamineamidotransferase)
           (GMP synthetase) [Listeria monocytogenes HCC23]
 gi|290894354|ref|ZP_06557319.1| GMP synthase [Listeria monocytogenes FSL J2-071]
 gi|217334087|gb|ACK39881.1| GMP synthase (glutamine-hydrolyzing) (Glutamineamidotransferase)
           (GMP synthetase) [Listeria monocytogenes HCC23]
 gi|290556109|gb|EFD89658.1| GMP synthase [Listeria monocytogenes FSL J2-071]
          Length = 514

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 264 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|205822290|sp|Q122U9|MNMA_POLSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 401

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 49/199 (24%), Gaps = 42/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               I+V +SGG DS      L     +     +K               D+  Y     
Sbjct: 6   SKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNW----------EDDDDSEYCSSNI 55

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + I    V++             RE +                     +
Sbjct: 56  DFVDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLD 115

Query: 113 HAKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           HA  + A  I T H      ++   T      +           +       L+  +  P
Sbjct: 116 HAMRLGAEKIATGHYARVRRNES--TGLHELLKGLDPAKDQSYFLHRLNQAQLSKTLF-P 172

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R    +  + 
Sbjct: 173 VGELHKTEVRRIADEIGLP 191


>gi|254933199|ref|ZP_05266558.1| guaA [Listeria monocytogenes HPB2262]
 gi|293584758|gb|EFF96790.1| guaA [Listeria monocytogenes HPB2262]
          Length = 514

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 264 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|254828475|ref|ZP_05233162.1| bifunctional GMP synthase/glutamine amidotransferase [Listeria
           monocytogenes FSL N3-165]
 gi|258600870|gb|EEW14195.1| bifunctional GMP synthase/glutamine amidotransferase [Listeria
           monocytogenes FSL N3-165]
          Length = 514

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 264 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|116872487|ref|YP_849268.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|123463685|sp|A0AHK7|GUAA_LISW6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116741365|emb|CAK20489.1| GMP synthetase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 518

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|16800150|ref|NP_470418.1| GMP synthase [Listeria innocua Clip11262]
 gi|24211759|sp|Q92CU0|GUAA_LISIN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|16413540|emb|CAC96312.1| guaA [Listeria innocua Clip11262]
          Length = 518

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 267

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 268 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 328 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 381

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 382 TELGMPDAIVWR 393


>gi|46907321|ref|YP_013710.1| GMP synthase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47091892|ref|ZP_00229686.1| GMP synthase [Listeria monocytogenes str. 4b H7858]
 gi|254823634|ref|ZP_05228635.1| GMP synthase [Listeria monocytogenes FSL J1-194]
 gi|254853020|ref|ZP_05242368.1| GMP synthase [Listeria monocytogenes FSL R2-503]
 gi|300764251|ref|ZP_07074245.1| GMP synthase [Listeria monocytogenes FSL N1-017]
 gi|50400343|sp|Q720X7|GUAA_LISMF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46880588|gb|AAT03887.1| GMP synthase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47019608|gb|EAL10347.1| GMP synthase [Listeria monocytogenes str. 4b H7858]
 gi|258606368|gb|EEW18976.1| GMP synthase [Listeria monocytogenes FSL R2-503]
 gi|293592857|gb|EFG00618.1| GMP synthase [Listeria monocytogenes FSL J1-194]
 gi|300514903|gb|EFK41956.1| GMP synthase [Listeria monocytogenes FSL N1-017]
 gi|328466753|gb|EGF37874.1| GMP synthase [Listeria monocytogenes 1816]
          Length = 514

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 264 QVMATLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|326428152|gb|EGD73722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salpingoeca sp. ATCC 50818]
          Length = 518

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 29/131 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
           +   + V +SGG DS      L     D      R++ + +   +        T++ E  
Sbjct: 47  WHGRVAVGMSGGVDSTVAAALLKQQGWDVHGFFMRNWDEKEERNVC-------TSEAEYA 99

Query: 72  YVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAA----------REARYALISEHAK 115
            V  +C+RL I    V +          P      A              ++    ++ +
Sbjct: 100 SVQRICNRLSIPCQRVDFVADYWNDVFTPTVHAYEAGITPNPDVLCNAHIKFDAFYDYVR 159

Query: 116 TINATLIMTAH 126
            +    + T H
Sbjct: 160 NLGFDWVATGH 170


>gi|262306085|gb|ACY45635.1| gln amidotransferase [Orchesella imitari]
          Length = 196

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           ++R  V    +L+ +SGG DS      L   L +      +  A+ VD+  LR+   D  
Sbjct: 36  YIRDAVKHHKVLMLLSGGVDSTVCAALLKKALRED-----QIIAVHVDNGFLRKNESD-- 88

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V    SR+ +  +VV 
Sbjct: 89  -AVEQSLSRIGLKVNVVR 105


>gi|110634566|ref|YP_674774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium sp. BNC1]
 gi|123353475|sp|Q11G66|MNMA_MESSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110285550|gb|ABG63609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chelativorans sp. BNC1]
          Length = 391

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 62/189 (32%), Gaps = 27/189 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEVRYVS 74
            ++VA+SGG DS  +   L     +     ++      DH     R  +     ++    
Sbjct: 14  RVVVAMSGGVDSSVVAGLLAREGYEVVGVTLQLY----DHGAAVHRAGSCCAGQDIDDAR 69

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTIN 118
            V   L IAH V+ ++    +  +   A                   +++ + E A+ + 
Sbjct: 70  RVAETLGIAHYVLDYEERFRKAVIDPFAESYVTGETPIPCVACNQTVKFSDLLETARELG 129

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  + T H    +    +    R           +  T    ++ ++  P     +  +R
Sbjct: 130 ADALATGHYIRSRANGAHRALYRPVDADRDQSYFLFATTQEQID-YLRFPLGGMSKPQVR 188

Query: 179 SFLLQRNIS 187
           +   +  +S
Sbjct: 189 AIAEEMGLS 197


>gi|332162070|ref|YP_004298647.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666300|gb|ADZ42944.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330860067|emb|CBX70393.1| tRNA-specific 2-thiouridylase mnmA [Yersinia enterocolitica W22703]
          Length = 373

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 51/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    L         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q  +
Sbjct: 173 ELEKPEVRRIAEQLEL 188


>gi|319781789|ref|YP_004141265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167677|gb|ADV11215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 396

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 26/132 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEV 70
                I+VA+SGG DS  +   L     D     ++      DH     R  +     ++
Sbjct: 10  PENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRAGSCCAGQDI 65

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V   L I H V+ ++    +  +   A                   ++A +   A
Sbjct: 66  DDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFADLLATA 125

Query: 115 KTINATLIMTAH 126
           K + A  + T H
Sbjct: 126 KELGADALATGH 137


>gi|262306073|gb|ACY45629.1| gln amidotransferase [Lynceus sp. 'Lyn']
          Length = 193

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 7   ESVRFFVRSLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           E    +VR +V    +++  VSGG DS      LH  L + S G+ +  AI +D+  LR+
Sbjct: 31  EECIDYVRQVVGDQKVVLMLVSGGVDSAVCAALLHKALRN-SGGESRVRAIHIDNGFLRK 89

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKN 91
               E   V D    L +   V+  ++
Sbjct: 90  N---ESEQVVDSLRSLGLNLKVIQARH 113


>gi|212218582|ref|YP_002305369.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuK_Q154]
 gi|259495827|sp|B6J7H5|MNMA_COXB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|212012844|gb|ACJ20224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii CbuK_Q154]
          Length = 371

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 42/192 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           I V +SGG DS    + L           + +  +  K  F           TA+ ++  
Sbjct: 19  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETDSKDPFC----------TAEQDLSD 68

Query: 73  VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKT 116
              +   + I   VV++                             RE ++  + +HAK 
Sbjct: 69  AKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKK 128

Query: 117 INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + AT + T H     ++  E   ++S   + ++   L  +    L +       P    +
Sbjct: 129 LGATHLATGHYACIQNENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS----VFPIGGYQ 184

Query: 174 REDIRSFLLQRN 185
           + ++R+   +R 
Sbjct: 185 KSEVRAIAKKRG 196


>gi|209364013|ref|YP_001424605.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii Dugway
           5J108-111]
 gi|207081946|gb|ABS77207.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 371

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 42/192 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           I V +SGG DS    + L           + +  +  K  F           TA+ ++  
Sbjct: 19  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETDSKDPFC----------TAEQDLSD 68

Query: 73  VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKT 116
              +   + I   VV++                             RE ++  + +HAK 
Sbjct: 69  AKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKK 128

Query: 117 INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + AT + T H     ++  E   ++S   + ++   L  +    L +       P    +
Sbjct: 129 LGATHLATGHYACIQNENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS----VFPIGGYQ 184

Query: 174 REDIRSFLLQRN 185
           + ++R+   +R 
Sbjct: 185 KSEVRAIAKKRG 196


>gi|212212452|ref|YP_002303388.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuG_Q212]
 gi|215919120|ref|NP_820145.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 493]
 gi|259495828|sp|B6IZW5|MNMA_COXB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|206584005|gb|AAO90659.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 493]
 gi|212010862|gb|ACJ18243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii CbuG_Q212]
          Length = 371

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 42/192 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           I V +SGG DS    + L           + +  +  K  F           TA+ ++  
Sbjct: 19  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETDSKDPFC----------TAEQDLSD 68

Query: 73  VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKT 116
              +   + I   VV++                             RE ++  + +HAK 
Sbjct: 69  AKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKK 128

Query: 117 INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + AT + T H     ++  E   ++S   + ++   L  +    L +       P    +
Sbjct: 129 LGATHLATGHYACIQNENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS----VFPIGGYQ 184

Query: 174 REDIRSFLLQRN 185
           + ++R+   +R 
Sbjct: 185 KSEVRAIAKKRG 196


>gi|123442025|ref|YP_001006008.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|205828986|sp|A1JLK6|MNMA_YERE8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122088986|emb|CAL11797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 373

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 51/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    L         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q  +
Sbjct: 173 ELEKPEVRRIAEQLEL 188


>gi|153208378|ref|ZP_01946716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|120576035|gb|EAX32659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii 'MSU Goat Q177']
          Length = 362

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 42/192 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           I V +SGG DS    + L           + +  +  K  F           TA+ ++  
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETDSKDPFC----------TAEQDLSD 59

Query: 73  VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKT 116
              +   + I   VV++                             RE ++  + +HAK 
Sbjct: 60  AKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKK 119

Query: 117 INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + AT + T H     ++  E   ++S   + ++   L  +    L +       P    +
Sbjct: 120 LGATHLATGHYACIQNENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS----VFPIGGYQ 175

Query: 174 REDIRSFLLQRN 185
           + ++R+   +R 
Sbjct: 176 KSEVRAIAKKRG 187


>gi|161830166|ref|YP_001597021.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 331]
 gi|189040503|sp|A9NDN1|MNMA_COXBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161762033|gb|ABX77675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 331]
          Length = 362

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 42/192 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           I V +SGG DS    + L           + +  +  K  F           TA+ ++  
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETDSKDPFC----------TAEQDLSD 59

Query: 73  VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKT 116
              +   + I   VV++                             RE ++  + +HAK 
Sbjct: 60  AKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKK 119

Query: 117 INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + AT + T H     ++  E   ++S   + ++   L  +    L +       P    +
Sbjct: 120 LGATHLATGHYACIQNENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS----VFPIGGYQ 175

Query: 174 REDIRSFLLQRN 185
           + ++R+   +R 
Sbjct: 176 KSEVRAIAKKRG 187


>gi|189036221|sp|A9KE87|MNMA_COXBN RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 362

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 42/192 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           I V +SGG DS    + L           + +  +  K  F           TA+ ++  
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETDSKDPFC----------TAEQDLSD 59

Query: 73  VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKT 116
              +   + I   VV++                             RE ++  + +HAK 
Sbjct: 60  AKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKK 119

Query: 117 INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + AT + T H     ++  E   ++S   + ++   L  +    L +       P    +
Sbjct: 120 LGATHLATGHYACIQNENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS----VFPIGGYQ 175

Query: 174 REDIRSFLLQRN 185
           + ++R+   +R 
Sbjct: 176 KSEVRAIAKKRG 187


>gi|91790389|ref|YP_551341.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas sp. JS666]
 gi|91699614|gb|ABE46443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaromonas sp. JS666]
          Length = 421

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 49/199 (24%), Gaps = 42/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               I+V +SGG DS      L     +     +K               D+  Y     
Sbjct: 26  SKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNW----------EDDDDSEYCSSNI 75

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + I    V++             RE +                     +
Sbjct: 76  DFVDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLD 135

Query: 113 HAKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           HA  + A  I T H      ++   T      +           +       L+  +  P
Sbjct: 136 HAMRLGAEKIATGHYARVRRNES--TGLHELLKGLDPAKDQSYFLHRLNQAQLSKTLF-P 192

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R    +  + 
Sbjct: 193 VGELHKTEVRRIADEIGLP 211


>gi|81628239|sp|Q820W2|MNMA_COXBU RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 362

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 64/192 (33%), Gaps = 42/192 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           I V +SGG DS    + L           + +  +  K  F           TA+ ++  
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETDSKDPFC----------TAEQDLSD 59

Query: 73  VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKT 116
              +   + I   VV++                             RE ++  + +HAK 
Sbjct: 60  AKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKK 119

Query: 117 INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + AT + T H     ++  E   ++S   + ++   L  +    L +       P    +
Sbjct: 120 LGATHLATGHYACIQNENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS----VFPIGGYQ 175

Query: 174 REDIRSFLLQRN 185
           + ++R+   +R 
Sbjct: 176 KSEVRAIAKKRG 187


>gi|262306083|gb|ACY45634.1| gln amidotransferase [Nicoletia meinerti]
          Length = 197

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++  V    +L+ VSGG DS      LH  L +      +  A+ +D+   R+    E 
Sbjct: 36  YIKETVGNNKVLLLVSGGIDSTVCAALLHKALRED-----QVIAVHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVV 87
           + V +   +L +   V+
Sbjct: 88  QKVEESLEKLGLRLKVI 104


>gi|260888183|ref|ZP_05899446.1| GMP synthase [Selenomonas sputigena ATCC 35185]
 gi|330838474|ref|YP_004413054.1| GMP synthase (glutamine-hydrolyzing) [Selenomonas sputigena ATCC
           35185]
 gi|260862017|gb|EEX76517.1| GMP synthase [Selenomonas sputigena ATCC 35185]
 gi|329746238|gb|AEB99594.1| GMP synthase (glutamine-hydrolyzing) [Selenomonas sputigena ATCC
           35185]
          Length = 517

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
              S +++    +R  +     L A+SGG DS    + L   +        + + + VDH
Sbjct: 201 QMSSFVKTTVEALREKIGAGKALCALSGGVDSSVAAVLLSKAIGK------QLTCVFVDH 254

Query: 61  C-LRETAKDEVRYV 73
             LR+   DEV  V
Sbjct: 255 GLLRKDEGDEVEAV 268


>gi|238754412|ref|ZP_04615768.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473]
 gi|238707445|gb|EEP99806.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473]
          Length = 371

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDNEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|227893351|ref|ZP_04011156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864766|gb|EEJ72187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus ultunensis DSM 16047]
          Length = 375

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 72/225 (32%), Gaps = 48/225 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     D      +++     + +        TA ++  
Sbjct: 5   SKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDAGVC-------TATEDYE 57

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
            V  V  ++ I +  ++++                  R          + ++    + A 
Sbjct: 58  DVKKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAM 117

Query: 116 TINATLIMTAHTFDDQLETV--------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            ++A  I   H      +TV         MR +    ++   LS +    +      +  
Sbjct: 118 DLDADYIAMGH----YAKTVKDKNGIVHMMRPKDGNKDQTYFLSQLSQDQIQK----VIF 169

Query: 168 PFLRCRREDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
           P     +  +R   L   ++    +D +      ER   R+F+ +
Sbjct: 170 PLANLTKPQVREIALANGLATAKKKDSTGICFIGERNF-RKFLSE 213


>gi|165923972|ref|ZP_02219804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 334]
 gi|165916580|gb|EDR35184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coxiella burnetii RSA 334]
          Length = 362

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 42/192 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           I V +SGG DS    + L           + +  +  K  F           TA+ ++  
Sbjct: 10  IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETDSKDPFC----------TAEQDLSD 59

Query: 73  VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKT 116
              +   + I   VV++                             RE ++  + EHAK 
Sbjct: 60  AKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLEHAKK 119

Query: 117 INATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           + AT + T H     ++  E   ++S   + ++   L  +    L +       P    +
Sbjct: 120 LGATHLATGHYACIQNENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS----VFPIGGYQ 175

Query: 174 REDIRSFLLQRN 185
           + ++R+   +R 
Sbjct: 176 KSEVRAIAKKRG 187


>gi|119029679|gb|ABL59963.1| GMP synthase [uncultured bacterium]
          Length = 419

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 21/184 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R  V    ++  +SGG DS  + + L+  + +RS           +  LR     E R 
Sbjct: 117 IRETVGKGKVICGLSGGVDSSVVAMLLNKAIGNRSVP-----IFIDNGLLRHN---EARK 168

Query: 73  VSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLIM 123
           V +  ++  +    +   +         + P+       R       +E  K   A  + 
Sbjct: 169 VKEAFTKFGVKIKTIDASDLFLRRLKGIADPELKRKKIGRAFIEVFSAEAKKFKGAHFLA 228

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+V  +      +    + G+       + L +  P     ++++R    +
Sbjct: 229 QGTLYPDLIESVSYKGPSATIKTHHNVGGL----PKRMKLKLIEPLKELFKDEVRLVGRK 284

Query: 184 RNIS 187
             + 
Sbjct: 285 LGLP 288


>gi|148265922|ref|YP_001232628.1| PP-loop domain-containing protein [Geobacter uraniireducens Rf4]
 gi|146399422|gb|ABQ28055.1| PP-loop domain protein [Geobacter uraniireducens Rf4]
          Length = 296

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 60/197 (30%), Gaps = 48/197 (24%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++  +R +     +L+A SGG DS  LL   H VL D++       AI+       T+
Sbjct: 30  EKLKGLLREM---GSVLIAFSGGVDSTFLLKVAHDVLGDKA------CAIT------ATS 74

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHAK 115
               + E R    +   +  A  +V   N     G     R+  Y        L  E A 
Sbjct: 75  PTYPESEFRQAVSLAREIG-ARQIVMESNELEIPGFAENPRDRCYHCKKELFQLCVEKAA 133

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCR 173
                 I      DD                   L            L +  P L     
Sbjct: 134 LEGYACIADGSNTDD-------------------LGDYRPGRRAVGELKVRSPLLEAGLS 174

Query: 174 REDIRSFLLQRNISWCE 190
           ++DIR    +  +   +
Sbjct: 175 KDDIRGLSRELGLPTWD 191


>gi|313204026|ref|YP_004042683.1| gmp synthase (glutamine-hydrolyzing) [Paludibacter propionicigenes
           WB4]
 gi|312443342|gb|ADQ79698.1| GMP synthase (glutamine-hydrolyzing) [Paludibacter propionicigenes
           WB4]
          Length = 505

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +ES    ++  +    +++A+SGG DS    + L+  +          + + VDH L
Sbjct: 196 SFVESTVAELKKQLGDDKVVLALSGGVDSSVAAVLLNKAIGK------NLTCVFVDHGL 248


>gi|311740139|ref|ZP_07713972.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304835|gb|EFQ80905.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase)
          [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 62

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
          +R+      + V +SGG+DS+ L+ AL +          +  A+ VDH L++ +
Sbjct: 1  MRAAGLDHAVAVGLSGGADSLALMAALVA-------EGHEVLALCVDHGLQDGS 47


>gi|239621924|ref|ZP_04664955.1| GMP synthase [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515115|gb|EEQ54982.1| GMP synthase [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 520

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREQVGDAEVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNS--KPQTGLMAAAR--------------EARYALISEHA 114
            V  D  +   I    V   +       G+    R              +A+  ++ E  
Sbjct: 260 QVKHDFVAATGIRLITVDAADDFLDALAGVSEPERKRKIIGEKFIRTFEKAQRQVLEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 320 ARGKEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPEDIKFQLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|303243807|ref|ZP_07330147.1| GMP synthase, large subunit [Methanothermococcus okinawensis IH1]
 gi|302485743|gb|EFL48667.1| GMP synthase, large subunit [Methanothermococcus okinawensis IH1]
          Length = 310

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 110/330 (33%), Gaps = 52/330 (15%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     IE     ++  +     ++A+SGG DS    +  +  + DR        A+ V
Sbjct: 1   MFNAKKFIEESISEIKEKIGNKKAIIALSGGVDSSVAAVLTYRAIGDR------LLAVFV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREA--RY--AL 109
           D  L R+   +E+  +      + +   ++  K+               R+   R    +
Sbjct: 55  DTGLMRKNEAEEIYKIFK--ENMGLNLKIIDAKDIFLKELKGVSDPEQKRKIIGRLFIEV 112

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E AK     +++      D +E+           +G   +     +   + L +  P 
Sbjct: 113 FEEVAKENGEEVLVQGTIAPDWIES-----------EGAIKTHHNIALPSGMVLEVVEPL 161

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKM 220
               ++++R    +  +         D+   R         VR+   + D  L+ +  + 
Sbjct: 162 RELYKDEVRILAKELGLP--------DNVANRQPFPGPGLAVRILGEITDEKLN-ICREA 212

Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
               +  ++       L   +  V       +  DI   +  +    +    A+      
Sbjct: 213 NAIVEEEIEKEGLNKDLWQYFAAVLDTKATGVKGDIREYNWVVALRFVESLDAMTASVPE 272

Query: 281 LPGYRSMERVMLFLKSGKRGCVSIGRVVID 310
           LP ++ ++R+   + S      ++ RVV+D
Sbjct: 273 LP-FKVLKRISKRITSEVP---NVARVVLD 298


>gi|318042099|ref|ZP_07974055.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0101]
          Length = 394

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 33/198 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDE 69
           +++      + V +SGG DS      L           +             L + A   
Sbjct: 28  LQAWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMSGKGACCAEGLVDAAG-- 85

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEH 113
                 +C +L + H VV ++    +                   +   RE ++  +   
Sbjct: 86  ------ICEQLGVEHHVVDFREHFKEQIVDFLVQGYGDGITPLPCSRCNREVKFGPMLHW 139

Query: 114 AKTI-NATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+     + I T H       +Q +    +  R    +      + D +  +    +  P
Sbjct: 140 AQEERGISRIATGHYARVCHGEQSDNGRHQLLRGLDRQKDQSYFLYD-LPQEALGRLVFP 198

Query: 169 FLRCRREDIRSFLLQRNI 186
                + D R    +  +
Sbjct: 199 LGELTKADTRVEAARHGL 216


>gi|299771967|ref|YP_003733993.1| GMP synthase [Acinetobacter sp. DR1]
 gi|298702055|gb|ADI92620.1| GMP synthase [Acinetobacter sp. DR1]
          Length = 522

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LREQIGDEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINAT 120
                   + I   V+     +           P+       RE       E  K     
Sbjct: 272 --QMFAENMGI--RVIRADAEQRFLTALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLEFELVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|262306087|gb|ACY45636.1| gln amidotransferase [Periplaneta americana]
          Length = 197

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +V+  V    +L+ VSGG DS      LH  L +      +  A+ +D+   R+    E 
Sbjct: 36  YVKETVGSNKVLMLVSGGVDSTVCAALLHKALRED-----QVIAVHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V     +L +   V++
Sbjct: 88  QRVEQSLEKLGLRLKVIN 105


>gi|220931051|ref|YP_002507959.1| GMP synthase (glutamine-hydrolyzing) [Halothermothrix orenii H 168]
 gi|254800102|sp|B8D0Z5|GUAA_HALOH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|219992361|gb|ACL68964.1| GMP synthase (glutamine-hydrolyzing) [Halothermothrix orenii H 168]
          Length = 510

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V  + ++  +SGG DS     A+ S +  R+ G  + + I VDH  LR+    E  
Sbjct: 209 IKEEVGSSQVISGLSGGVDS-----AVASTMVHRAIGD-QLTCIFVDHGLLRKG---EAE 259

Query: 72  YVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         I    V  +            P+T       E       E  K  +A  
Sbjct: 260 QVKRTFVDEFNIPLVYVDARERFLNRLNGVKDPETKRKIIGEEFIRVFEEEARKLGDARY 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E            + +        +  +++  +  P     ++++R   
Sbjct: 320 LVQGTLYSDVIE------SGSETAETIKSHHNVGGLPDNMDFKLIEPLRNLFKDEVRKIG 373

Query: 182 LQRNIS 187
               + 
Sbjct: 374 EVLGLP 379


>gi|88803301|ref|ZP_01118827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
 gi|88780867|gb|EAR12046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polaribacter irgensii 23-P]
          Length = 173

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 39/135 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA------------K 67
             ++V +SGG DS      L     +     +K           + +             
Sbjct: 2   KRVIVGLSGGVDSSVTAYLLKKQGYEVIGLFMK--------NWHDDSVTISNDCPWLEDS 53

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALIS 111
           ++   V     +L I   VV       +                       RE ++ +  
Sbjct: 54  NDAMLV---AEKLGIPFQVVDLSKDYKERIVDYMFSEYRKGRTPNPDVLCNREIKFDVFM 110

Query: 112 EHAKTINATLIMTAH 126
           + A  + A  + T H
Sbjct: 111 DIALKLGADYVATGH 125


>gi|284799943|ref|ZP_06390439.1| GMP synthase protein [Neisseria subflava NJ9703]
 gi|284796421|gb|EFC51768.1| GMP synthase protein [Neisseria subflava NJ9703]
          Length = 438

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 121 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 174

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISE 112
               E + V D     L +   V+     +           P+        E      +E
Sbjct: 175 N---EGKMVMDMFARNLGV--RVIHVDAEEQFLAKLAGVTDPEKKRKIIGAEFIEVFDAE 229

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +  ++ L +  P    
Sbjct: 230 EKKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDL 286

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 287 FKDEVRELGVALGLP 301


>gi|56479231|ref|YP_160820.1| GMP synthase [Aromatoleum aromaticum EbN1]
 gi|81356291|sp|Q5NYE5|GUAA_AZOSE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56315274|emb|CAI09919.1| GMP synthase [Aromatoleum aromaticum EbN1]
          Length = 521

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 63/196 (32%), Gaps = 27/196 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE VR  V        +++ +SGG DS  +   LH  + +      + + + VD+  L
Sbjct: 212 EAIEKVRAQVGQ----EEVILGLSGGVDSSVVAALLHRAIGE------QLTCVFVDNGLL 261

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R     E   V       L +    V             S P+       RE      +E
Sbjct: 262 RLN---EAEQVMLTFARNLGVKVIHVDATEQFMGHLKGVSDPEAKRKIIGREFVEVFQAE 318

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +   LNL +  P    
Sbjct: 319 ANKLPNAKWLAQGTIYPDVIES---AGSKTGKAHTIKSHHNVGGLPETLNLKLLEPLREL 375

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   +   +  
Sbjct: 376 FKDEVRELGIALGLPH 391


>gi|289450037|ref|YP_003475194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184584|gb|ADC91009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 380

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 60/205 (29%), Gaps = 50/205 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---------DHCLRE---- 64
               +LVA+SGG DS      L              +  ++         +HC R     
Sbjct: 2   SKGKVLVAMSGGVDSSVAAKLLVD-------HGYDVTGATMQIWQNEREENHCDRGCCSL 54

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYA 108
           +A ++ R V    +++ I + V+++K+   +                       R  ++ 
Sbjct: 55  SAVEDARRV---AAKIGIPYYVLNFKDDFRKQVIAPFVDAYWQGETPNPCILCNRHIKFE 111

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD------TILYDLN 162
              + A  +    I T H        V            +  +   D      T+     
Sbjct: 112 EFLQKALMMGFDHIATGHYGR-----VVYNQATGRYALALSATTAKDQTYALYTLTQQQL 166

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P     +E +R   L+  + 
Sbjct: 167 SHLLLPLGDLVKERVREIALEAGLP 191


>gi|283956644|ref|ZP_06374123.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791893|gb|EFC30683.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 511

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 71/187 (37%), Gaps = 27/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGSDKVLCAVSGGVDSSVVAALLASAIKE------QVIVVFVDNGLLRSGEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARY-------ALISEHAKTI-NAT 120
           ++    + L I    +S   S+     +A  R   + R         +  E AK   +  
Sbjct: 263 FMFK--NTLGIDL--ISIDASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVK 318

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+  +   +               +   +NL +  P     ++++R+ 
Sbjct: 319 YLAQGTLYTDIIESSVIGVSKTIKS-----HHNVGGLPEKMNLKLIEPLKEIFKDEVRAL 373

Query: 181 LLQRNIS 187
            L+  +S
Sbjct: 374 GLELGLS 380


>gi|262196644|ref|YP_003267853.1| GMP synthase, large subunit [Haliangium ochraceum DSM 14365]
 gi|262079991|gb|ACY15960.1| GMP synthase, large subunit [Haliangium ochraceum DSM 14365]
          Length = 525

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 62/179 (34%), Gaps = 22/179 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVC 77
              ++ A+SGG DS  +   LH  + DR       + I VD+  LR   ++ V  V    
Sbjct: 228 DGRVICALSGGVDSSVVAALLHKAIGDR------LTCIFVDNGLLRAGERETVASVFR-- 279

Query: 78  SRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
              RI   V+  +            P+       RE       E     NA  +     +
Sbjct: 280 DHFRIDLHVIDAEQRFLDRLADITDPEHKRKLIGREFIAVFEEESQHIENAAYLAQGTLY 339

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            D +E+V  +      +    + G+ +     + L +  P     ++++R    +  + 
Sbjct: 340 PDVIESVSFKGPSAVIKSHHNVGGLPE----RMKLKLIEPLRELFKDEVRVLGAELGLP 394


>gi|261880515|ref|ZP_06006942.1| transcription regulator ExsB [Prevotella bergensis DSM 17361]
 gi|270332737|gb|EFA43523.1| transcription regulator ExsB [Prevotella bergensis DSM 17361]
          Length = 242

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 59/188 (31%), Gaps = 39/188 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ +L        DR    + F     D+        E+ Y    C RL I H 
Sbjct: 32  VSGGMDSITMLY----EFQDRIALGLSF-----DYG-SNHNAREIPYAEMHCKRLGIPHI 81

Query: 86  VVSWKNSKP--QTGLMAAAR---EARYA------------------LISEHAKTINATLI 122
           ++         ++ L+  A    E  Y                   + +  A++ N   I
Sbjct: 82  IIPLDFMSRYFKSSLLEGADAIPEGDYNEVGMKSTVVPFRNGIMLSIAAGMAESQNLKYI 141

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           M A+   D    +     R    + M  +    T      + I  P+    + DI     
Sbjct: 142 MMANHSGDH---IIYPDCRPEFIRAMSKATQTGTFP---GIKILAPYTDITKGDIACRGK 195

Query: 183 QRNISWCE 190
              + + E
Sbjct: 196 ALGLDYTE 203


>gi|302878076|ref|YP_003846640.1| GMP synthase, large subunit [Gallionella capsiferriformans ES-2]
 gi|302580865|gb|ADL54876.1| GMP synthase, large subunit [Gallionella capsiferriformans ES-2]
          Length = 539

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 60/187 (32%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +++ +SGG DS      LH  +        + + + VD+  LR     E  
Sbjct: 229 IRAQVGGDEVILGLSGGVDSSVAAALLHRAI------GTQLTCVFVDNGLLRLN---EAE 279

Query: 72  YV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V       L +    V               P+       RE       E AK   A  
Sbjct: 280 QVMETFAQNLGVKVIHVDASAEFLHHLAGVTDPEQKRKIIGREFVEVFQRESAKLSQAKW 339

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      ++     +        +   ++L +  P     ++++R   
Sbjct: 340 LAQGTIYPDVIES---AGGKNKKAHTIKSHHNVGGLPDTMHLKLLEPLRELFKDEVRELG 396

Query: 182 LQRNISW 188
           +Q  +  
Sbjct: 397 VQLGLPP 403


>gi|332521153|ref|ZP_08397611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lacinutrix algicola 5H-3-7-4]
 gi|332043246|gb|EGI79443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lacinutrix algicola 5H-3-7-4]
          Length = 396

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 27/130 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHCLRETAKD--EVRY 72
              ++V +SGG DS      L     +            ++++ D C      D  +   
Sbjct: 2   KKRVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISDEC--PWLDDSNDAML 59

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAKT 116
           V     +L I    V       +                       RE ++ +  + A  
Sbjct: 60  V---AEKLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALD 116

Query: 117 INATLIMTAH 126
           + A  + T H
Sbjct: 117 LGADYVATGH 126


>gi|227501015|ref|ZP_03931064.1| PP-loop superfamily ATP-binding protein [Anaerococcus tetradius
           ATCC 35098]
 gi|227216788|gb|EEI82186.1| PP-loop superfamily ATP-binding protein [Anaerococcus tetradius
           ATCC 35098]
          Length = 285

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 34/200 (17%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F S  E +   ++ L+     ++A SGG DS  +L         R+       AI   + 
Sbjct: 4   FNSQKEKLDKIIKDLLED-KFVLAFSGGVDSSLILKLASDFRKKRN----DIVAIM--YN 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAK--- 115
              T   ++    ++   + +   +V+   + N   +   +      +  L  +  K   
Sbjct: 57  TNTTPDGDLENAQNLADEMDVELRIVNIDVFDNDHIKNNSIDRCYHCKSFLFEQAFKLRD 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCR 173
            +    ++     DD       +  R       G+  + D         +  P       
Sbjct: 117 ELGYKHVVDGSNLDD------YKVFRP------GVRALNDK-------GVISPLKDAGFS 157

Query: 174 REDIRSFLLQRNISWCEDPS 193
           ++ +R++  +  +   + PS
Sbjct: 158 KKMVRAYAKELGLEVYKRPS 177


>gi|297180723|gb|ADI16931.1| GMP synthase, pp-ATPase domain/subunit [uncultured SAR406 cluster
           bacterium HF0010_18O13]
          Length = 515

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +++ V    +L+ +SGG DS  + + LH  + +          I VDH L
Sbjct: 213 IKNKVKNEKVLLGLSGGVDSSVVAMLLHKAIGN------NLICIFVDHGL 256


>gi|297537830|ref|YP_003673599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera sp. 301]
 gi|297257177|gb|ADI29022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera sp. 301]
          Length = 369

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 59/205 (28%), Gaps = 55/205 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS--- 74
              H++V +SGG DS    + L     + +   +K               D   Y S   
Sbjct: 7   SKKHVVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNW----------EDDDTDEYCSSKQ 56

Query: 75  ------DVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISE 112
                  V  ++ I    V++                 A R          E ++    +
Sbjct: 57  DLIDAVSVADKIGIDIEAVNFSKEYKDRVFDNFLSEYKAGRTPNPDILCNAEIKFKAFLD 116

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
           HA  + A +I T H           + + +  + G+      D    D + ++ R     
Sbjct: 117 HAMGLGADVIATGHYA---------QVRENPLKPGLFQLMKADDGSKDQSYFLHRLNQAQ 167

Query: 168 ------PFLRCRREDIRSFLLQRNI 186
                 P  +  + ++R       +
Sbjct: 168 LSKTLFPLGQMLKREVREIARGAGL 192


>gi|294666592|ref|ZP_06731831.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292603612|gb|EFF47024.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 378

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 51/198 (25%), Gaps = 49/198 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            I+V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L I           W           AA           RE ++    + 
Sbjct: 52  RRDAVAVCGVLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPF 169
           A+ + A  I T H        V  R  R    +G          L+ L          P 
Sbjct: 112 AQALGAERIATGHYAQ-----VAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPI 166

Query: 170 LRCRREDIRSFLLQRNIS 187
               +  +R       + 
Sbjct: 167 GDLEKSTLRRIAQDAGLP 184


>gi|256425783|ref|YP_003126436.1| tRNA-specific 2-thiouridylase MnmA [Chitinophaga pinensis DSM 2588]
 gi|256040691|gb|ACU64235.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Chitinophaga pinensis DSM 2588]
          Length = 366

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 69/244 (28%), Gaps = 65/244 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------------------RSFGKIKF---- 53
           +     +LVA+SGG DS    + LH    +                  +  G        
Sbjct: 1   MSRHGKVLVAMSGGIDSTVTALMLHEQGYEVVGITMKTWDYASAGSSKKETGCCNLDSFN 60

Query: 54  --SAISVDHCLRETAKDEVRYVSDVCSRLR--IAHSVVSWKNSKPQTGLMAAAR-EARYA 108
              A +V H           +V D+       + ++ V    +              ++ 
Sbjct: 61  DARAAAVHHGF-------PHFVLDIRDEFGDFVINNFVDEYIAGRTPNPCVLCNTHIKWR 113

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD------TILYDLN 162
            + + A  ++   I T H          +R Q        G+  + D       +  D+ 
Sbjct: 114 ALMKRADAMDCAFIATGHYAQ-------IREQDGRHILSKGIDDLKDQSYVLWGLQQDVL 166

Query: 163 LWISRPFLRCRREDIRSF------------LLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
                P  + R+ +IR                   I +  D     + + R  ++R V  
Sbjct: 167 ARTILPLGQYRKTEIRQMAFDFGYPELAKKAESYEICFVPD-----NDY-RGFLKRKVDG 220

Query: 211 IDLH 214
           ++  
Sbjct: 221 LEEQ 224


>gi|225388352|ref|ZP_03758076.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme
           DSM 15981]
 gi|225045595|gb|EEG55841.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme
           DSM 15981]
          Length = 361

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 38/195 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--------- 72
           ++V +SGG DS      L           ++          ++   D             
Sbjct: 8   VVVGMSGGVDSSVAAYLLKQQGYRVIGVTMQI--------WQDEDGDVQEEQGGCCGLSA 59

Query: 73  ---VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RYALISEHAKT 116
                 V  +L I + V+++K    +  +   A E              RY       + 
Sbjct: 60  VDDARRVAMQLEIPYYVMNFKQEFREHVMDYFAGEYLEGRTPNPCIACNRYVKWESLLRR 119

Query: 117 ---INATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
              I A  I T H    ++LE      +R   E       + +     L+  +  P    
Sbjct: 120 SIAIGADYIATGHYARIERLENGRFALRRSVTEAKDQTYALYNLTQEQLSRTLM-PVGSY 178

Query: 173 RREDIRSFLLQRNIS 187
            +++IR    +  ++
Sbjct: 179 HKDEIRRMAEEIGLN 193


>gi|71027269|ref|XP_763278.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350231|gb|EAN30995.1| hypothetical protein TP03_0260 [Theileria parva]
          Length = 450

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 4/182 (2%)

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLK 219
             N  + RPF+   +  + SF+   N  +  D +N +  +ER  +R+ V    +  +  K
Sbjct: 9   HKNYLLVRPFVSTIKSRLYSFMEDINEKYHRDSTNDESHYERNILRKSVIPSIVAGIDGK 68

Query: 220 MKKFQDLRVKVNN----AVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAIC 275
                D   +  N    ++  L  +  T+       +      I+S      +  S+   
Sbjct: 69  HTACSDALDQSVNGFYQSINNLSRRCDTLKESVDKEVEMYFHYINSKYKSQPVPYSSNYT 128

Query: 276 GGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEET 335
               S    +   R+       +     +    I  R N  +  R     P +    E  
Sbjct: 129 SNSHSTDAEKESYRIFYETLFKRTYGDKLNSFEIRFRNNLAYFNRIGLKFPRIFSLKELN 188

Query: 336 TV 337
            +
Sbjct: 189 II 190


>gi|310657611|ref|YP_003935332.1| gmp synthetase [Clostridium sticklandii DSM 519]
 gi|308824389|emb|CBH20427.1| GMP synthetase (glutamine aminotransferase) [Clostridium
           sticklandii]
          Length = 509

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           + VR  +R  V     L A+SGG DS    + +H  + D        + I VDH  LR+ 
Sbjct: 203 DKVRL-IRQQVGDKKTLCALSGGVDSSVAAVLVHKAIGD------NLTCIFVDHGLLRKN 255

Query: 66  AKDEVR 71
             D+V 
Sbjct: 256 EGDDVE 261


>gi|256826638|ref|YP_003150597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptobacterium curtum DSM 15641]
 gi|256582781|gb|ACU93915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cryptobacterium curtum DSM 15641]
          Length = 394

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/200 (19%), Positives = 61/200 (30%), Gaps = 30/200 (15%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLR-ETA 66
              F R       +LV +SGG DS      L     D     +K    ++D   +R   A
Sbjct: 38  AHMFQRDHQRIPRVLVGLSGGVDSSVCAALLVETGWDVCGAYMKN--WTMDVPGMRCPWA 95

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG---LMAAAREAR-------------YALI 110
            D +     V  RL I   V  ++ +  +     L+   R  R             + L 
Sbjct: 96  DD-LADAKRVAVRLGIDFRVYDFQEAYKREVVDYLVDEYRAGRTPNPDVMCNQQVKFGLF 154

Query: 111 SEHAKTINATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            + A+      I T H      D +     R  R           +       +   I  
Sbjct: 155 FDAAQDDGFDYIATGHYARASHDPV-----RLLRAADTHKDQTYFLYRMSSDAVAHTIF- 208

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     +  +R+   QRN+S
Sbjct: 209 PLGGLLKTQVRAAAEQRNLS 228


>gi|108803920|ref|YP_643857.1| hypothetical protein Rxyl_1079 [Rubrobacter xylanophilus DSM 9941]
 gi|108765163|gb|ABG04045.1| conserved hypothetical protein [Rubrobacter xylanophilus DSM 9941]
          Length = 279

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 80/264 (30%), Gaps = 64/264 (24%)

Query: 23  LVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           LVA SGG D S+ L +A+ ++  +R       +   +          E+    ++ + L 
Sbjct: 22  LVAFSGGVDSSLALAVAVRALSRERVLAVTSCNETYL--------PSELEKARELAASLG 73

Query: 82  IAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           + H V++ +       +   +      +   YA +   A+      ++     DD+    
Sbjct: 74  VRHEVINTRELDDPNYASNPSNRCYFCKSTLYAELGRMARERGYGCVVDGANADDE---- 129

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDP- 192
                                      L +  P       +E++R       +S  + P 
Sbjct: 130 ---------------GDWRPGRKAARELGVLSPLSEAGVGKEEVRRLARHLGLSTWDKPA 174

Query: 193 --------------SN-------TDDRFER------VRVRRFVRDIDLHALYLKMKKFQD 225
                         +          + F R      VRVR       L     +M++   
Sbjct: 175 LACLSSRFPYGQRITPEKLSQVAQAEEFLRSRGFRQVRVRHHGEIARLEVAEEEMERAFR 234

Query: 226 LRVKVNNAVAMLIPKYLTVHMRSI 249
           +R ++ +A+      Y+ + +   
Sbjct: 235 MREEICSALKEAGFAYVALDLSGY 258


>gi|283783106|ref|YP_003373860.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Gardnerella vaginalis 409-05]
 gi|298253862|ref|ZP_06977449.1| GMP synthase [Gardnerella vaginalis 5-1]
 gi|283441154|gb|ADB13620.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Gardnerella vaginalis 409-05]
 gi|297532005|gb|EFH70980.1| GMP synthase [Gardnerella vaginalis 5-1]
          Length = 520

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V  A ++  +SGG DS      +H  + +      + + + VDH  LR+    EV 
Sbjct: 209 IRAEVGNAQVICGLSGGVDSAVAAALVHKAIGN------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVVSWKNS--KPQTGLMAAAR--------------EARYALISEHA 114
            V  D      I    V  ++       G+    R              +A+  +I E  
Sbjct: 260 QVKHDFVEATGIKLIAVDAEDDFLNALKGVSEPERKRKIIGEKFIRTFEKAQRQVIEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           KT      +   T   D +E+             +        +  DL   +  P     
Sbjct: 320 KTGAEVKFLVQGTLYPDVVES-----GGGDGAANIKSHHNVGGLPKDLKFKLIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|196247862|ref|ZP_03146564.1| exsB protein [Geobacillus sp. G11MC16]
 gi|196212646|gb|EDY07403.1| exsB protein [Geobacillus sp. G11MC16]
          Length = 223

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 57/199 (28%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS   L       ++         A++ D+  R   + E+   + +   L 
Sbjct: 9   VVV-FSGGQDSTTCLFWAKKQFAE-------VEAVTFDYGQRH--RREIEVAASIADELG 58

Query: 82  IAHSVVSW---------KNSKPQTGLMAA----------AREARY-ALISEHAKTINATL 121
           + H+V+             ++ +  +              R   + +  +  AK   A  
Sbjct: 59  VRHTVLDMSLLGQLAPNALTRGEIAIEQKEGELPTTFVDGRNLLFLSFAAVLAKQRGARH 118

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLR 171
           I+T        ET              G     D  +  LN+           I  P + 
Sbjct: 119 IVTG-----VCET-----------DFSGYPDCRDIFIKSLNVTLNLAMDYPFVIYTPLMW 162

Query: 172 CRREDIRSFLLQRN-ISWC 189
             + +      +   + + 
Sbjct: 163 LTKAETWKLADELGALEFV 181


>gi|319791106|ref|YP_004152746.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase
           [Variovorax paradoxus EPS]
 gi|315593569|gb|ADU34635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Variovorax paradoxus EPS]
          Length = 366

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 50/206 (24%), Gaps = 56/206 (27%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               I+V +SGG DS      L     +     +K               D+  Y     
Sbjct: 2   AKQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNW----------EDDDDSEYCSSNI 51

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
                + V   L I    V++                 A R          E ++    +
Sbjct: 52  DFIDAASVADVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
           HA  + A  I T H              R     G            D + ++ R     
Sbjct: 112 HAMRLGAEKIATGH----------YARVRHNEVTGRHELLKGLDPSKDQSYFLHRLNQAQ 161

Query: 168 ------PFLRCRREDIRSFLLQRNIS 187
                 P     + ++R    +  + 
Sbjct: 162 LSKTLFPVGELHKTEVRRIAEEIGLP 187


>gi|227889771|ref|ZP_04007576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227849635|gb|EEJ59721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 383

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 40/218 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 16  RVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 68

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V   + I +  ++++                  R          E ++    + A  ++
Sbjct: 69  KVADEIGIPYYSINFEKDYWDRVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLD 128

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      DD      MR +    ++   L+ +      D    +  P     +
Sbjct: 129 ADYIAMGHYAATRVDDNGVVHMMRPKDGNKDQTYFLNQLSQ----DQLKKVIFPLANLTK 184

Query: 175 EDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +R   +   ++    +D +      ER   R+F+ +
Sbjct: 185 PQVREIAIASGLATAKKKDSTGICFIGERNF-RKFLSE 221


>gi|237653287|ref|YP_002889601.1| GMP synthase [Thauera sp. MZ1T]
 gi|237624534|gb|ACR01224.1| GMP synthase, large subunit [Thauera sp. MZ1T]
          Length = 521

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 27/196 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 210 IEEAVQKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 263

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISE 112
               E + V +    RL     VV    ++           P+       RE      +E
Sbjct: 264 N---EGKLVMEMFAGRLH--AKVVHVDATEQFMGHLKGVTDPEQKRKIIGREFVEVFQAE 318

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +   L L +  P    
Sbjct: 319 ARKLPNARWLAQGTIYPDVIES---GGAKSKKAHTIKSHHNVGGLPETLGLKLLEPLRDL 375

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   +   +  
Sbjct: 376 FKDEVRELGVALGLPH 391


>gi|330959655|gb|EGH59915.1| hypothetical protein PMA4326_13969 [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 387

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR---YVSDVCS 78
          + + VSGG DS+  LIA+H  L+   F   + +A+  D      + +  +      +   
Sbjct: 23 VALGVSGGKDSIACLIAVHRYLNSIGFQGPR-TAVHADLG----SVEWEQSVIKCQEAAD 77

Query: 79 RLRIAHSVVSWKNSK 93
          +L     VV      
Sbjct: 78 KLGWKLEVVKRAAGG 92


>gi|256820771|ref|YP_003142050.1| tRNA-specific 2-thiouridylase MnmA [Capnocytophaga ochracea DSM
           7271]
 gi|256582354|gb|ACU93489.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Capnocytophaga ochracea DSM 7271]
          Length = 397

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 33/132 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS      L     +     +K           + +    DE  ++ D 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMK--------NWHDDSVTISDECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V                               RE ++ +  + A
Sbjct: 54  NDALLVAEKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLA 113

Query: 115 KTINATLIMTAH 126
            ++ A  + T H
Sbjct: 114 LSLGADYVATGH 125


>gi|169839127|ref|ZP_02872315.1| Cell cycle protein MesJ [candidate division TM7 single-cell isolate
           TM7a]
          Length = 60

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
                 I T H  DD +ET   R  R  +  G  L G+ +  
Sbjct: 9   KYWYNKIATGHNMDDNVETFIFRLLRGTSMNG--LKGIPEVR 48


>gi|320161725|ref|YP_004174950.1| hypothetical protein ANT_23240 [Anaerolinea thermophila UNI-1]
 gi|319995579|dbj|BAJ64350.1| hypothetical protein ANT_23240 [Anaerolinea thermophila UNI-1]
          Length = 273

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 39/203 (19%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +S     +     L      +VA SGG DS  + +  H  L +R        A++   
Sbjct: 5   MDVSLQNKYQSLKTYLASLGSAVVAFSGGVDSGLVAVVAHQALGERML------AVT--- 55

Query: 61  CLRE--TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISE 112
            L+      D V+    V  +    H V+ + + +  T +          +  R  L+ E
Sbjct: 56  -LQSPVETPDGVQAAIQVARQFGFPHRVMPYDDLEKHTFVENTPERCYFCKRERLGLLVE 114

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-- 170
            AK    + ++     DD                   L            L +  P +  
Sbjct: 115 LAKQAGFSAVLEGSNVDD-------------------LQDYRPGKRAVNELGVLSPLIEA 155

Query: 171 RCRREDIRSFLLQRNISWCEDPS 193
              ++++R+   +  +     PS
Sbjct: 156 GLTKDEVRALSRELELPVWNRPS 178


>gi|315640189|ref|ZP_07895309.1| GMP synthase [Enterococcus italicus DSM 15952]
 gi|315484071|gb|EFU74547.1| GMP synthase [Enterococcus italicus DSM 15952]
          Length = 515

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 33/196 (16%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V    +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E 
Sbjct: 210 AIREKVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTSIFVDHGLLRKG---EA 260

Query: 71  RYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTI 117
             V D +  +  +    V  K+         S P+        E  Y      ++ A   
Sbjct: 261 DQVMDALGGKFGLNIIKVDAKDRFLSKLAGVSDPEQKRKIIGNEFVYLFDDEATKLAGEE 320

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             + +     + D +E            + +        +  D+   +  P     ++++
Sbjct: 321 GISFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEV 374

Query: 178 RSFLLQRN----ISWC 189
           R+   +      I W 
Sbjct: 375 RALGTELGMPDSIVWR 390


>gi|257457992|ref|ZP_05623151.1| GMP synthase [Treponema vincentii ATCC 35580]
 gi|257444705|gb|EEV19789.1| GMP synthase [Treponema vincentii ATCC 35580]
          Length = 515

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 30/198 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           +  ++V   ++  V    ++ A+SGG DS    + +H  + D      + + I VDH  L
Sbjct: 203 TAADTVIQEIKRKVGDKKVISALSGGVDSSVASVLVHKAVGD------QLTCIFVDHGLL 256

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEH 113
           R   KDE   V         L I H   S +  K   G+    R+ +        +  E 
Sbjct: 257 R---KDEAAQVLKTYRETLGLNIIHVDASERFLKKLAGVTEPERKRKIIGEEFIRVFEEE 313

Query: 114 AKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL---WISRPF 169
           AK I     ++    + D +E+         ++K   +    +      ++    +  P 
Sbjct: 314 AKKIGTVDFLVQGTIYPDVIES-------GGSKKAAVIKSHHNVGGLPEHIDFKELIEPL 366

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R+      I 
Sbjct: 367 RMLFKDEVRALGKALGIP 384


>gi|84686908|ref|ZP_01014792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665105|gb|EAQ11585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2654]
          Length = 381

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 65/214 (30%), Gaps = 52/214 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDEVRY 72
            ++VA+SGG DS  +   L     D     ++      DH             A  ++  
Sbjct: 22  RVVVAMSGGVDSSVVAAKLKREGYDVIGVTLQLY----DHG--AALAKKGACCAGVDIHD 75

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKT 116
              V   +   H V+ ++N   +  +   A                   ++  +   AK 
Sbjct: 76  ARRVAEEMGFPHYVLDYENIFREAVIEEFADSYLGGATPVPCIRCNERVKFKDLLATAKD 135

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLNLWIS 166
           ++A  + T H             QR   + G  L    D          +   +   ++ 
Sbjct: 136 LDADCMATGH-----------YIQRFDGDAGPELHRAADANRDQSYFLFSTTPEQLSFLR 184

Query: 167 RPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
            P      +++ R+   +  +   + P + D  F
Sbjct: 185 FPLGHLKTKDETRALAREFGLEVADKPDSQDICF 218


>gi|226940740|ref|YP_002795814.1| tRNA-specific 2-thiouridylase MnmA [Laribacter hongkongensis HLHK9]
 gi|226715667|gb|ACO74805.1| TrmU [Laribacter hongkongensis HLHK9]
          Length = 359

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 54/207 (26%), Gaps = 60/207 (28%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVS-- 74
               I+V +SGG DS      L      +  G            ++    D +  Y S  
Sbjct: 4   KKKRIVVGLSGGVDSSVTAYLL------KQQGHEVIGVF-----MQNWEDDNDSEYCSIK 52

Query: 75  -------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALIS 111
                   V   L I   +V++     +          +A R          E ++    
Sbjct: 53  QDSLDAMSVADLLGIDMEIVNFAREYKERVFQYFLDEYSAGRTPNPDVLCNAEIKFKAFL 112

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---- 167
           ++A  + A  I T H              R     G            D + ++ R    
Sbjct: 113 DYAMQLGADCIATGHYA------------RKLERDGRHYLLKGVDPGKDQSYFLYRLVPA 160

Query: 168 -------PFLRCRREDIRSFLLQRNIS 187
                  P     + ++R    +  + 
Sbjct: 161 QLEKALFPLGDLHKTEVRRIAGEIGLP 187


>gi|283795899|ref|ZP_06345052.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. M62/1]
 gi|291076535|gb|EFE13899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. M62/1]
          Length = 359

 Score = 48.8 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 74/227 (32%), Gaps = 49/227 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDH---CLRETAKDE 69
              ++V +SGG DS      L     D      + +   +  A+  +     L   A D+
Sbjct: 3   KKKVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLS--AVDD 60

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEH 113
            R V      L I + V+++K    +                    A  R  ++  + + 
Sbjct: 61  ARRV---AEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKR 117

Query: 114 AKTINATLIMTAHTFDDQLETV------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           +  I A  I T H    ++E +        +S     ++   L  +    L    +    
Sbjct: 118 SLEIGADYIATGHYA--RIEKLPNGRYALKKSATAAKDQTYALYNLTQEQLAHTLM---- 171

Query: 168 PFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFERVRVRRFV 208
           P     +++IR    + N+     P +       D+ + +  +R  +
Sbjct: 172 PVGEYTKDEIRKMAQELNLRVAHKPDSQEICFIPDNDYAK-FIREDI 217


>gi|169828574|ref|YP_001698732.1| queuosine biosynthesis protein [Lysinibacillus sphaericus C3-41]
 gi|254764358|sp|B1HPF6|QUEC_LYSSC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|168993062|gb|ACA40602.1| Queuosine biosynthesis protein [Lysinibacillus sphaericus C3-41]
          Length = 219

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I+V  SGG DS   L       ++         A++ ++  R   + E+     +   L 
Sbjct: 7  IVV-FSGGQDSTTCLFWAKERFAE-------IEAVTFNYGQRH--RLEIECAEQIAEELG 56

Query: 82 IAHSVVS 88
          I H ++ 
Sbjct: 57 IKHHILD 63


>gi|262306103|gb|ACY45644.1| gln amidotransferase [Scutigerella sp. 'Scu3']
          Length = 197

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++RS+V    +L+ VSGG DS      LH  L +      +  A+ +++   R+    E 
Sbjct: 36  YIRSMVGENKVLMLVSGGVDSTVCAALLHKALKED-----QVIALHINNGFMRKG---ET 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V     ++ +   VV+
Sbjct: 88  QQVETSLRKIGLKLKVVN 105


>gi|163840499|ref|YP_001624904.1| GMP synthase [Renibacterium salmoninarum ATCC 33209]
 gi|162953975|gb|ABY23490.1| GMP synthase (glutamine-hydrolyzing) [Renibacterium salmoninarum
           ATCC 33209]
          Length = 529

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 17/186 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS     A+ + L  R+ G  + + + VDH  LRE   ++V 
Sbjct: 218 IRAQVGSGKVICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLLREGEAEQVE 271

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +V+     L +A     + ++          R+          +     L+  A    
Sbjct: 272 RDFVAVTGVNLYVAREADRFLDALAGVSDPETKRKIIGREFIRSFEEAERALVAQAGQDG 331

Query: 130 DQLE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +Q++     T+Y         +G            +  DL   +  P     ++++RS  
Sbjct: 332 EQIKFLVQGTLYPDVVESGGGEGAANIKSHHNVGGLPDDLQFDLVEPLRALFKDEVRSVG 391

Query: 182 LQRNIS 187
            Q  + 
Sbjct: 392 AQLGLP 397


>gi|118595168|ref|ZP_01552515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophilales bacterium HTCC2181]
 gi|118440946|gb|EAV47573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophilales bacterium HTCC2181]
          Length = 369

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 55/204 (26%), Gaps = 47/204 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS--- 74
               I+V +SGG DS      L     D +   +K               DE  Y S   
Sbjct: 2   KGESIVVGLSGGVDSAVTAWLLKDQGYDVTALFMKNW----------EDDDEDEYCSSKQ 51

Query: 75  ------DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
                  V  ++ +   VV++     +                        E ++     
Sbjct: 52  DLLDAIAVAEKIGVDIEVVNFAKEYKEKVFSLFIDGLKTGITPNPDILCNSEIKFDAFLN 111

Query: 113 HAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           HA  + A  I T H       D       ++      ++   L  +    L         
Sbjct: 112 HALALGADKIATGHYAKVMERDGLF--YLLKGDDGSKDQSYFLHRLNQDQLSKS----VF 165

Query: 168 PFLRCRREDIRSFLLQRNISWCED 191
           P     ++D+R    + ++    D
Sbjct: 166 PLGGLLKKDVREIARKNSL-HIHD 188


>gi|301167728|emb|CBW27312.1| GMP synthase [Bacteriovorax marinus SJ]
          Length = 522

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 66/203 (32%), Gaps = 30/203 (14%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E VR      +    +L A SGG DS+   +  H VL D            VDH
Sbjct: 205 MLEEATEMVRA-----IGDKKVLCAFSGGVDSLVAAMLSHRVLGD------NLYCFFVDH 253

Query: 61  C-LRETAKDEVRYVSDVCSRLRIAHSVVSWKN----SKPQTGLMAAAREARYALISEHAK 115
             LR     ++ ++  +  +L +   ++  K+               R+       E  +
Sbjct: 254 GLLRP---QDLGHIKLLQEKLPLNIEIIDVKDLFLSKLKGLSDPEEKRKMIGNTFIEVFE 310

Query: 116 T----------INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
                      IN   ++    + D +E++    +   +   +        +   + L +
Sbjct: 311 KKVHEFEESHGINFDYLLQGTLYPDVIESISPHEEDGKSVT-IKSHHNVGGLPERMKLKL 369

Query: 166 SRPFLRCRREDIRSFLLQRNISW 188
             P     ++++R    + ++  
Sbjct: 370 LEPLRHLFKDEVRKLGEELSLEH 392


>gi|164687029|ref|ZP_02211057.1| hypothetical protein CLOBAR_00655 [Clostridium bartlettii DSM
           16795]
 gi|164603914|gb|EDQ97379.1| hypothetical protein CLOBAR_00655 [Clostridium bartlettii DSM
           16795]
          Length = 511

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L A+SGG DS    + +H  + D        + + VDH  LR+   D+V 
Sbjct: 209 LKATIGDKKVLCALSGGVDSSVAAVLVHKAIGD------NLTCVFVDHGLLRKNEGDDVE 262


>gi|194759139|ref|XP_001961807.1| GF15152 [Drosophila ananassae]
 gi|190615504|gb|EDV31028.1| GF15152 [Drosophila ananassae]
          Length = 680

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+   R  
Sbjct: 216 EECIRYIREKVGSNKVLLLVSGGVDSSVCAALL-----RRALYPNQIIAVHVDNGFMR-- 268

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
            KDE   V      + I   V  
Sbjct: 269 -KDESEKVERSLREIGIELIVRK 290


>gi|332881980|ref|ZP_08449621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332680106|gb|EGJ53062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 397

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 33/132 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVSD- 75
             ++V +SGG DS      L     +     +K           + +    DE  ++ D 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMK--------NWHDDSVTISDECPWLEDS 53

Query: 76  -----VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHA 114
                V  +L I    V                               RE ++ +  + A
Sbjct: 54  NDALLVAEKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLA 113

Query: 115 KTINATLIMTAH 126
            ++ A  + T H
Sbjct: 114 LSLGADYVATGH 125


>gi|311740584|ref|ZP_07714411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304104|gb|EFQ80180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 365

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 37/191 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAK-----DEVRYVS 74
            +LVA+SGG DS     A  +V +      +   A+  D    RE A+     ++     
Sbjct: 6   RVLVAMSGGVDSSV--AAARAVEAGHEVIGVHL-ALHKDAQQTREKARGCCSLEDSADAR 62

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGL----MAAAR------------EARYALISEHAKTIN 118
            +C +L I   V  +     +  +     + AR            + ++  + +    + 
Sbjct: 63  RICDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALG 122

Query: 119 ATLIMTAHTFDDQLETV----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              + T H       T+    YMR   D  +    + G+      +   +   P     +
Sbjct: 123 FDAVATGHYA-----TIDKDGYMRRSLDEKKDQSYVLGVISAEELEHCFF---PIGDTPK 174

Query: 175 EDIRSFLLQRN 185
             IR       
Sbjct: 175 PQIREEAAAHG 185


>gi|146300143|ref|YP_001194734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacterium johnsoniae UW101]
 gi|205816863|sp|A5FHA9|MNMA_FLAJO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146154561|gb|ABQ05415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacterium johnsoniae UW101]
          Length = 395

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 25/128 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHC-LRETAKDEVRYVS 74
             ++V +SGG DS      L     +            ++++ + C   E + D    V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLQQQGYEVIGLFMKNWHDDSVTISNECPWLEDSND-ALLV- 59

Query: 75  DVCSRLRIAHSVVSWKNSKPQT-------GLMAAA---------REARYALISEHAKTIN 118
               +L I    V       +                       RE ++ +  + A ++ 
Sbjct: 60  --AEKLGIPFQTVDLSEEYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSLG 117

Query: 119 ATLIMTAH 126
           A  + T H
Sbjct: 118 ADYVATGH 125


>gi|300716270|ref|YP_003741073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia billingiae Eb661]
 gi|299062106|emb|CAX59222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Erwinia billingiae Eb661]
          Length = 367

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMK--------NWEEDDGEEYCTAAEDLAD 57

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHAK 115
              VC +L I    V++              E +                  A +   A+
Sbjct: 58  AQAVCDKLGIYLHTVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAE 117

Query: 116 TINATLIMTAH 126
            + A  I T H
Sbjct: 118 DLGADFIATGH 128


>gi|330504661|ref|YP_004381530.1| GMP synthase [Pseudomonas mendocina NK-01]
 gi|328918947|gb|AEB59778.1| GMP synthase [Pseudomonas mendocina NK-01]
          Length = 525

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 41/205 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61
           + +E     VR+ V  A++L+ +SGG DS  +   LH  + D      + + + VD+   
Sbjct: 212 NIVEDAIAAVRAQVGDANVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLL 265

Query: 62  -LRET-----------------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR 103
            L E                  A  E +++S++               + P+       R
Sbjct: 266 RLHEGDQVMAMFAENMGVKVIRANAEEQFLSNLAGE------------ADPEKKRKIIGR 313

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
                  +E +K  N   +     + D +E+      +      +        +  ++NL
Sbjct: 314 TFIDVFDAEASKLDNIQFLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNL 370

Query: 164 WISRPFLRCRREDIRSFLLQRNISW 188
            +  P     ++++R   L+  + +
Sbjct: 371 KLVEPLRELFKDEVRKIGLELGLPY 395


>gi|212703506|ref|ZP_03311634.1| hypothetical protein DESPIG_01551 [Desulfovibrio piger ATCC 29098]
 gi|212673074|gb|EEB33557.1| hypothetical protein DESPIG_01551 [Desulfovibrio piger ATCC 29098]
          Length = 514

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 34/205 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61
           S +E V   +   +   H++ A+SGG DS  + + LH  +  R         I VD+   
Sbjct: 202 SFVERVVKEMAEKIGDKHVVCALSGGIDSTVVAVLLHKAIGHR------LHCIFVDNGLL 255

Query: 62  -----------LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110
                      LRE     + +V      L +   V   +  +   G           + 
Sbjct: 256 RLNEGEEVVSYLREHFDLNLNFVQAQDRFLDLLKGVEDPEKKRKIIGHTFI------DIF 309

Query: 111 SEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            E AK +     +     + D +E+V  +      +    + G+ +T    + L +  P 
Sbjct: 310 DEEAKKLPEVEYLAQGTLYPDVIESVSHKGPSAVIKSHHNVGGLPET----MKLKLVEPL 365

Query: 170 LRCRREDIRSFLLQRN----ISWCE 190
               ++++R    +      I W  
Sbjct: 366 RELFKDEVRKVAAELGMPDSIVWRH 390


>gi|37526602|ref|NP_929946.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|44887931|sp|Q7N3K4|GUAA_PHOLL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|36786034|emb|CAE15086.1| GMP synthetase [glutamine-hydrolyzing] (glutamine amidotransferase)
           (GMP synthetase) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 525

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +R  V   H+++ +SGG DS    + LH  + +R       + + VD+  L
Sbjct: 212 SIIEDTVVRLREQVGEDHVILGLSGGVDSSVTALLLHRAIGNR------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +    +  +    V  ++         + P+       R        E
Sbjct: 266 RLN---EATQVMEMFAGKFGLNIVHVPAEDRFLTALAGINDPEEKRKTIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ASKQAQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPEEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|329768495|ref|ZP_08259984.1| GMP synthase [Gemella haemolysans M341]
 gi|328836723|gb|EGF86378.1| GMP synthase [Gemella haemolysans M341]
          Length = 514

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 30/191 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L A+SGG DS  +   L   + D      +   + +DH  LR+    E  
Sbjct: 209 IRAEVGDQKVLCALSGGVDSSVVAALLDKAIGD------QLICMFIDHGLLRKG---EAE 259

Query: 72  YV-----SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTI 117
            V      ++     +    V  K+         S P+        E  Y    E AK  
Sbjct: 260 AVMNTFSKEIEGGFNMNLIKVDAKDRFLGKLKGVSDPEQKRKIIGNEFVYVFDEECAKLH 319

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +   +     + D +E            + +        +  D+   +  P     ++++
Sbjct: 320 DVPFLAQGTLYTDVIE------SGTKNAQTIKSHHNVGGLPEDMRFSLIEPLNTLFKDEV 373

Query: 178 RSFLLQRNISW 188
           R+      +  
Sbjct: 374 RALGEALGLPH 384


>gi|312136612|ref|YP_004003949.1| exsb protein [Methanothermus fervidus DSM 2088]
 gi|311224331|gb|ADP77187.1| exsB protein [Methanothermus fervidus DSM 2088]
          Length = 231

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS+    AL   +     G  +  AI+ D+  +++A+ E+     +C  L I HS
Sbjct: 11 LSGGLDSVV---ALFDFIKKNPNG--EVHAITFDYG-QKSAEMEINASKKICKYLGIKHS 64

Query: 86 VVSWK 90
          V++ K
Sbjct: 65 VLNVK 69


>gi|317133301|ref|YP_004092615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ethanoligenens harbinense YUAN-3]
 gi|315471280|gb|ADU27884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ethanoligenens harbinense YUAN-3]
          Length = 363

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 55/207 (26%), Gaps = 56/207 (27%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------- 68
           +    +L A+SGG DS      L    +  S   I  +            ++        
Sbjct: 7   LAGKTVLAAMSGGVDSSVTAALLKEQGA--SVIGITLNVW-------PEEENPCARSCCS 57

Query: 69  --EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE--------------ARYALISE 112
             +V     VC+ L I H V++ +    +  +   A E              AR    + 
Sbjct: 58  VTDVDDARAVCNVLGIPHYVLNTQADFKRGVIDYFAAEYLRGRTPNPCIACNARVKFTAM 117

Query: 113 HAK--TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYD 160
             K     A  I T H           R  RD    G  L    D           +   
Sbjct: 118 LRKADEFQADFIATGHYA---------RILRDAG--GCRLVRAADARKDQTYVLYMLTQT 166

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
               I  P     +  IR+      + 
Sbjct: 167 QLGRILFPCGGYEKPQIRALAKAFGLP 193


>gi|262402513|ref|ZP_06079074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC586]
 gi|262351295|gb|EEZ00428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC586]
          Length = 371

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 11  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 62

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 63  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 122

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 123 VLDADYIAMGH 133


>gi|258621706|ref|ZP_05716737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM573]
 gi|258626348|ref|ZP_05721195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM603]
 gi|262171838|ref|ZP_06039516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus MB-451]
 gi|258581400|gb|EEW06302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM603]
 gi|258585937|gb|EEW10655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus VM573]
 gi|261892914|gb|EEY38900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio mimicus MB-451]
          Length = 371

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 11  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 62

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 63  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 122

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 123 VLDADYIAMGH 133


>gi|241889310|ref|ZP_04776613.1| GMP synthase [Gemella haemolysans ATCC 10379]
 gi|241864147|gb|EER68526.1| GMP synthase [Gemella haemolysans ATCC 10379]
          Length = 461

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 30/191 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L A+SGG DS  +   L   + D      +   + +DH  LR+    E  
Sbjct: 156 IRAEVGDQKVLCALSGGVDSSVVAALLDKAIGD------QLICMFIDHGLLRKG---EAE 206

Query: 72  YV-----SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTI 117
            V      ++     +    V  K+         S P+        E  Y    E AK  
Sbjct: 207 AVMNTFSKEIEGGFNMNLIKVDAKDRFLGKLKGVSDPEQKRKIIGNEFVYVFDEECAKLH 266

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +   +     + D +E            + +        +  D+   +  P     ++++
Sbjct: 267 DVPFLAQGTLYTDVIE------SGTKNAQTIKSHHNVGGLPEDMRFSLIEPLNTLFKDEV 320

Query: 178 RSFLLQRNISW 188
           R+      +  
Sbjct: 321 RALGEALGLPH 331


>gi|268679235|ref|YP_003303666.1| GMP synthase, large subunit [Sulfurospirillum deleyianum DSM 6946]
 gi|268617266|gb|ACZ11631.1| GMP synthase, large subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 511

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 23/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ V    +L  VSGG DS  +   L   + D      K  ++ VD+  LR     E  
Sbjct: 209 IQAQVGDKKVLCGVSGGVDSSVVATLLAEAIGD------KLVSVFVDNGLLRAN---ERA 259

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V  +     +    V             S P+                E  K      +
Sbjct: 260 QVEAMFKSRGVPLITVDASEKFLSRLAGVSDPEKKRKIIGETFIEVFDEEAKKHNGIQFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ D + ++    +  P     ++++R+   
Sbjct: 320 AQGTLYTDVIESVSVKGPSKTIKSHHNVGGLPDWMSFE----LIEPLREIFKDEVRTLGA 375

Query: 183 QRNIS 187
           +  + 
Sbjct: 376 ELGLP 380


>gi|154317352|ref|XP_001557996.1| hypothetical protein BC1G_03578 [Botryotinia fuckeliana B05.10]
 gi|150844995|gb|EDN20188.1| hypothetical protein BC1G_03578 [Botryotinia fuckeliana B05.10]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 33/208 (15%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
             ++     +R+LV     +L AVSGG DS      +H  + DR      F A+ V++  
Sbjct: 216 KFVDQEIARIRTLVGEKGQVLGAVSGGVDSTVAAKLMHEAIGDR------FHAVLVNNGV 269

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVVSW--------------KNSKPQTG------LMA 100
           +R     E   V   +   L I   V                 +  +   G        A
Sbjct: 270 MRLN---ECEQVRKTLTENLGINLIVADASEDFLDGLAGLDEPEAKRKFIGGKFIDVFEA 326

Query: 101 AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
            A++   A  +   K       +    + D +E++  +      +    + G+   +   
Sbjct: 327 EAKKIEDAAANSD-KAGKIEFFLQGTLYPDVIESISFKGPSATIKTHHNVGGLPKRMTEG 385

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISW 188
             L +  P     ++++R    +  I+ 
Sbjct: 386 QGLKLIEPLRELFKDEVRQLGRELGIAH 413


>gi|148381238|ref|YP_001255779.1| GMP synthase [Clostridium botulinum A str. ATCC 3502]
 gi|153933266|ref|YP_001385613.1| GMP synthase [Clostridium botulinum A str. ATCC 19397]
 gi|153935009|ref|YP_001389019.1| GMP synthase [Clostridium botulinum A str. Hall]
 gi|226738421|sp|A7FYP0|GUAA_CLOB1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738422|sp|A5I720|GUAA_CLOBH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148290722|emb|CAL84853.1| GMP synthase [glutamine-hydrolyzing] [Clostridium botulinum A str.
           ATCC 3502]
 gi|152929310|gb|ABS34810.1| GMP synthase [Clostridium botulinum A str. ATCC 19397]
 gi|152930923|gb|ABS36422.1| GMP synthase [Clostridium botulinum A str. Hall]
          Length = 510

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            ++  V    ++ A+SGG DS    + +H  +        + + + VDH  LR+   D+V
Sbjct: 208 AIKEKVGDKKVICALSGGVDSSVAAVIVHKAIGK------QLTCVFVDHGLLRKDEGDQV 261

Query: 71  RYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATL 121
             +     +  +    V+ ++       G+    R+ +        +  E AK +   + 
Sbjct: 262 ERIFK--DQFDMNLIRVNAQDRFLGKLKGVSDPERKRKIIGEEFIRVFEEEAKKLGDISF 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R+  
Sbjct: 320 LVQGTIYPDIVE------SGTNTSATIKSHHNVGGLPEDMEFKLIEPLRELFKDEVRAVG 373

Query: 182 LQRNISW 188
            +  I  
Sbjct: 374 EELGIPH 380


>gi|14520772|ref|NP_126247.1| hypothetical protein PAB1992 [Pyrococcus abyssi GE5]
 gi|5457988|emb|CAB49478.1| Predicted ATPase of the PP-loop superfamily [Pyrococcus abyssi GE5]
          Length = 260

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 57/208 (27%), Gaps = 51/208 (24%)

Query: 1   MFLSPIESVRFF-VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M    I  +R F   + +    +L+  SGG DS   L  L              SA++  
Sbjct: 1   MLKDAIREIRRFGEETGIIEKKVLLLFSGGKDSSLALYILKE-------AGYDVSALTFF 53

Query: 60  HCLRETAKDEVRYVS---DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
           H            +         L + H +V       +  +       R   I  H K 
Sbjct: 54  HKWS-----WPEVIKWGMKFTKSLGVEHYLVDLTEGLRRVSIG------RKGPICVHCKK 102

Query: 117 I------------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI----LYD 160
           I               ++      +D++              G  L      I    +  
Sbjct: 103 IMLWNAKWFALNNGFEILAKGDNANDKI-------------VGTLLDQCPGDIRLCEIPK 149

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISW 188
           + + I RP ++ +  ++     +  I  
Sbjct: 150 IGIPIFRPLIKYKAIEVEEMAKEARIEP 177


>gi|237801139|ref|ZP_04589600.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023996|gb|EGI04053.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 155

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 31/130 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH 126
           + A LI T H
Sbjct: 114 LGADLIATGH 123


>gi|91214760|ref|ZP_01251733.1| hypothetical protein P700755_17884 [Psychroflexus torquis ATCC
           700755]
 gi|91187187|gb|EAS73557.1| hypothetical protein P700755_17884 [Psychroflexus torquis ATCC
           700755]
          Length = 69

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 21/64 (32%)

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            L   +  I+    +    W E+ SN  + + R R+   V  +        +  FQ    
Sbjct: 3   LLPFSKNAIQDEAEKHGWDWREEASNQKNTYFRNRICNKVIPLLEEENPNLLVSFQHTLN 62

Query: 229 KVNN 232
            +  
Sbjct: 63  HLQQ 66


>gi|114563431|ref|YP_750944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella frigidimarina NCIMB 400]
 gi|122299537|sp|Q081F9|MNMA_SHEFN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114334724|gb|ABI72106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella frigidimarina NCIMB 400]
          Length = 372

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 53/198 (26%), Gaps = 44/198 (22%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
              ++V +SGG DS      L     +     +K           E        A D+++
Sbjct: 10  GKKVIVGMSGGVDSSVSAYLLMQQGFEVEGLFMK--------NWEEDDTDEYCAAADDLK 61

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHA 114
               VC +L I    V++             A  +  R               A +    
Sbjct: 62  DAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAD 121

Query: 115 KTINATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             ++A  I   H        D  +E   +R      ++   L  +    +         P
Sbjct: 122 DILDADYIAMGHYVRRRDNSDGSVE--MLRGVDGNKDQSYFLYTLSHEQVARS----LFP 175

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R    +  +
Sbjct: 176 VGELEKHQVREIAQKLGL 193


>gi|328676178|gb|AEB27048.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella cf. novicida Fx1]
          Length = 359

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLM-AAAR----------EARYALISEHAKT 116
              VC  + I    ++     W N      +   A R          E ++     +   
Sbjct: 56  AQAVCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H       T  +        KG+  +      LY L     R    P    
Sbjct: 116 LGGDYIATGH----YARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 171

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 172 EKSKVREIAKENNLVTFDKKDST 194


>gi|266623735|ref|ZP_06116670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium hathewayi DSM 13479]
 gi|288864455|gb|EFC96753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium hathewayi DSM 13479]
          Length = 369

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 44/218 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------ 72
              ++V +SGG DS      L     D     ++          ++   +          
Sbjct: 13  KPKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQI--------WQDEETEVQEESGGCCG 64

Query: 73  ------VSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALI 110
                    V   L I + V+++K    +                    A  R  ++  +
Sbjct: 65  LSAVDDARRVAWDLGIPYYVMNFKEEFRENVIDYFVDEYRNGRTPNPCIACNRYVKWESL 124

Query: 111 SEHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            + +  I A  I T H    +QLE      +            + +   Y L   +  P 
Sbjct: 125 LKRSLDIGADYIATGHYARIEQLENGRYALKMSVTAAKDQTYALYNLTQYQLAHTLM-PV 183

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNT------DDRFER 201
               ++ IR    + N+     P +       D  + R
Sbjct: 184 GAYSKDQIREIADRINLKVAHKPDSQEICFIPDHDYAR 221


>gi|208780006|ref|ZP_03247349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella novicida FTG]
 gi|208744010|gb|EDZ90311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella novicida FTG]
          Length = 359

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLM-AAAR----------EARYALISEHAKT 116
              VC  + I    ++     W N      +   A R          E ++     +   
Sbjct: 56  AQAVCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H       T  +        KG+  +      LY L     R    P    
Sbjct: 116 LGGDYIATGH----YARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 171

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 172 EKSKVREIAKENNLVTFDKKDST 194


>gi|118496723|ref|YP_897773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. novicida U112]
 gi|194324030|ref|ZP_03057805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. novicida FTE]
 gi|166234853|sp|A0Q454|MNMA_FRATN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118422629|gb|ABK89019.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella novicida U112]
 gi|194321927|gb|EDX19410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella tularensis subsp. novicida FTE]
          Length = 359

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLM-AAAR----------EARYALISEHAKT 116
              VC  + I    ++     W N      +   A R          E ++     +   
Sbjct: 56  AQAVCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H       T  +        KG+  +      LY L     R    P    
Sbjct: 116 LGGDYIATGH----YARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 171

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 172 EKSKVREIAKENNLVTFDKKDST 194


>gi|77165505|ref|YP_344030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani ATCC 19707]
 gi|76883819|gb|ABA58500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani ATCC 19707]
          Length = 391

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 24/197 (12%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-------ISVDHCL 62
           R F R+ +    ++V +SGG DS    + L       S   +K           +V    
Sbjct: 18  RRFPRNQMNKPKVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVDFADESECTVA-QD 76

Query: 63  RETAKD----------EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-REARYALIS 111
           RE A+           E  +  +   R  + H  +                RE ++    
Sbjct: 77  REDAQAVTSLLGISFHEANFAMEYWDR--VFHYFLEEYRLGRTPNPDILCNREIKFKTFL 134

Query: 112 EHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +HA  +  TLI T H    DQ E    R  +   +       +       L+  +  P  
Sbjct: 135 DHALALGNTLIATGHYARIDQKEGR-YRLLKGRDKNKDQSYFLYTLGQKQLSHTLF-PLG 192

Query: 171 RCRREDIRSFLLQRNIS 187
              +  +R   +Q  + 
Sbjct: 193 ELEKPQVRRIAIQARLP 209


>gi|33862127|ref|NP_893688.1| hypothetical protein PMM1571 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634345|emb|CAE20030.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 274

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 40/196 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             ++ +R F ++L     + VA SGG DS  +       L  ++       AI+    + 
Sbjct: 14  EKLKEIRNFFKNLNS---VCVAYSGGVDSTLVASLAFEQLGSKAI------AIT---GVS 61

Query: 64  ET-AKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKT 116
              AK  +         + I H  +          SK       A ++  +   +  +K 
Sbjct: 62  PALAKTLLEEAKTQARWIGIQHLEIETSELDQSSYSKNPKNRCFACKKELHKHTTFLSKK 121

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP--FLRCRR 174
           +N  ++      DD                   L      I       +  P    +  +
Sbjct: 122 LNYKIVCDGVNLDD-------------------LDDYRPGIKAAKEAGVLSPLALFKFTK 162

Query: 175 EDIRSFLLQRNISWCE 190
           +DIR         W +
Sbjct: 163 KDIRDISRALGFPWWD 178


>gi|294625260|ref|ZP_06703899.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292600434|gb|EFF44532.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 378

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 51/198 (25%), Gaps = 49/198 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            I+V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L I           W           AA           RE ++    + 
Sbjct: 52  RRDAVAVCGLLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPF 169
           A+ + A  I T H        V  R  R    +G          L+ L          P 
Sbjct: 112 AQALGAERIATGHYAQ-----VAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPI 166

Query: 170 LRCRREDIRSFLLQRNIS 187
               +  +R       + 
Sbjct: 167 GDLEKSTLRRIAQDAGLP 184


>gi|289706606|ref|ZP_06502956.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Micrococcus luteus SK58]
 gi|289556741|gb|EFD50082.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Micrococcus luteus SK58]
          Length = 539

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 24/191 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  +     +  +SGG DS     A+ + L  R+ G  + + + VDH L RE    E+ 
Sbjct: 225 IREQIGDKRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVYVDHGLMREGESAEIE 278

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM-----AAAREARYALISEHAKTINATLIMTAH 126
                      A  V+        + L       A R+          +   A +++ + 
Sbjct: 279 --QAFGEAHGGARLVMVDAREDFLSALAGVTDPEAKRKIIGERFIRTFEKAQADIVLESE 336

Query: 127 TFDDQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRRED 176
              D  E       T+Y          G            +  D+   +  P     +++
Sbjct: 337 HDPDATEVRFLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPDDIEFELCEPLRELFKDE 396

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 397 VRAVGAELGLP 407


>gi|213964802|ref|ZP_03393001.1| GMP synthase [glutamine-hydrolyzing] [Corynebacterium amycolatum
           SK46]
 gi|213952338|gb|EEB63721.1| GMP synthase [glutamine-hydrolyzing] [Corynebacterium amycolatum
           SK46]
          Length = 524

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 41/205 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE VR     +      +  +SGG DS     A+ + L  R+ G  + + + VDH  L
Sbjct: 208 ELIEQVR---NQVGETGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLL 258

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAARE----- 104
           R+  +++V   +V+   ++L      ++  +SK           P+T      RE     
Sbjct: 259 RQGEREQVEKDFVAATGAKL------ITVDDSKVFLDALAGITDPETKRKTIGREFIRSF 312

Query: 105 --ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
             A    +    +      ++    + D +E+             +        +  D+ 
Sbjct: 313 ERAVAQALEGAPEGETVDFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVE 367

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P     ++++R+   +  + 
Sbjct: 368 FTLVEPLRLLFKDEVRAVGRELGLP 392


>gi|148652768|ref|YP_001279861.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter sp. PRwf-1]
 gi|205816892|sp|A5WE20|MNMA_PSYWF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|148571852|gb|ABQ93911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter sp. PRwf-1]
          Length = 398

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 44/198 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS    + L           +K           E        A +++   
Sbjct: 29  RVVVGMSGGVDSSVSAVLLQQAGFQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 80

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             VC ++ I     ++                 A R          E ++    ++A T+
Sbjct: 81  QAVCDKIGINLHTANFAMEYWDRVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYAVTL 140

Query: 118 NATLIMTAH--------TFDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            A  I T H        T +D LE    MR   +  ++   L  +    +         P
Sbjct: 141 GADYIATGHYTRRSVNYTREDGLEVAHLMRGLDNNKDQSYFLHAVGGDKIAKT----LFP 196

Query: 169 FLRCRREDIRSFLLQRNI 186
                + ++R    + ++
Sbjct: 197 VGELEKPEVRRIAEEHDL 214


>gi|78224180|ref|YP_385927.1| hypothetical protein Gmet_2987 [Geobacter metallireducens GS-15]
 gi|78195435|gb|ABB33202.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
          Length = 280

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 55/189 (29%), Gaps = 38/189 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++  +R +     +LVA SGG DS  LL   H VL DR+      S           +
Sbjct: 9   EKLKAILREM---GSVLVAFSGGVDSTFLLRVAHDVLGDRAVALTATSPTY------PES 59

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINAT 120
             E R    +   + +   VV          +          ++  + L    A  +  +
Sbjct: 60  --EFREAVALALEIGVRQVVVESNELEIPGFAGNPRNRCYHCKKELFQLAGARAAGLGLS 117

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIR 178
                   DD                   LS           L +  P L     +EDIR
Sbjct: 118 WAADGSNVDD-------------------LSDFRPGRQAIQELGVRSPLLEAGLGKEDIR 158

Query: 179 SFLLQRNIS 187
               +  + 
Sbjct: 159 QLSRELGLP 167


>gi|289666030|ref|ZP_06487611.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 378

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 52/189 (27%), Gaps = 31/189 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVCS 78
            I+V VSGG DS      L       +   ++  A   D        A+D+ R    VC 
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEQIAGLFMQNWA---DDG-SGDCRAEDDRRDAVAVCG 60

Query: 79  RLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTINATLI 122
            L I           W           AA           RE ++    + A+ + A  I
Sbjct: 61  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRPFLRCRREDIR 178
            T H        V  R  R    +G          L+ L          P     +  +R
Sbjct: 121 ATGHYAQ-----VAHRGGRWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175

Query: 179 SFLLQRNIS 187
                  + 
Sbjct: 176 RTAQDAGLP 184


>gi|238762225|ref|ZP_04623197.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC
           33638]
 gi|238699572|gb|EEP92317.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC
           33638]
          Length = 373

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 45/197 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH--TFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A+ + A  I T H     D +E  +  +R      ++   L  +    L         P 
Sbjct: 117 AEDLGADYIATGHYVRRQD-VEGKSRLLRGLDGNKDQSYFLYTLSHEQLAQS----LFPV 171

Query: 170 LRCRREDIRSFLLQRNI 186
               + ++R    Q ++
Sbjct: 172 GELEKPEVRRIAEQLDL 188


>gi|77459818|ref|YP_349325.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf0-1]
 gi|123604062|sp|Q3KA70|MNMA_PSEPF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77383821|gb|ABA75334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas fluorescens Pf0-1]
          Length = 374

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 38/196 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
               ++V +SGG DS    + L     +     +K           E        A D++
Sbjct: 10  SKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMK--------NWEEDDGTEYCTAMDDL 61

Query: 71  RYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHA 114
                VC ++ I     +     W N          A           RE ++    ++A
Sbjct: 62  ADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYA 121

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             + A LI T H     D    T  ++      ++   L  +    +         P   
Sbjct: 122 MMLGADLIATGHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKT----LFPVGE 177

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 178 LEKPEVRAIAEKYELA 193


>gi|327474241|gb|EGF19648.1| GMP synthase [Streptococcus sanguinis SK408]
          Length = 520

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S+P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIIKADAAKRFLDKL--------AGVSEPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMRFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|327400840|ref|YP_004341679.1| exsB protein [Archaeoglobus veneficus SNP6]
 gi|327316348|gb|AEA46964.1| exsB protein [Archaeoglobus veneficus SNP6]
          Length = 211

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 57/199 (28%)

Query: 24  VAV-SGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           VAV SGG DS + +  AL         G I+  A++ D+  +  AK E+ Y   +C    
Sbjct: 4   VAVLSGGMDSGVAMAKALQE-------GSIEL-ALTFDYG-QMAAKKEIEYAGKLCKYYG 54

Query: 82  IAHSVVSW-----------KNSKPQTG---LMAAAREARYA------------LISEHAK 115
           +AH V+             +   P+     L A A E   A            + +  A+
Sbjct: 55  VAHKVIELPWLANLSSGLTEGRIPEVSEEILEAVAEETAKAVWVPNRNMVFISIAAAFAE 114

Query: 116 TINATLIMT------AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           ++    ++       A TF D  E                +  M D +     + +  P 
Sbjct: 115 SMGCNAVVVGFNGEEAQTFPDNSEEF--------------VKAMNDALRIVNGVSVYAPL 160

Query: 170 LRCRREDIRSFLLQRNISW 188
           ++  + +I    +  N  +
Sbjct: 161 IKLDKTEIVKLGMSMNFPF 179


>gi|312897894|ref|ZP_07757308.1| GMP synthase protein [Megasphaera micronuciformis F0359]
 gi|310620989|gb|EFQ04535.1| GMP synthase protein [Megasphaera micronuciformis F0359]
          Length = 521

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           VR  V    +++A+SGG DS      +   + +      + + I VDH L R+   DEV 
Sbjct: 220 VRRTVGAGKVVLALSGGVDSSVAAALISRAVGN------QLTCIFVDHGLMRKNEGDEVE 273

Query: 72  YV 73
             
Sbjct: 274 AA 275


>gi|157813142|gb|ABV81316.1| putative GMP synthetase [Nebalia hessleri]
          Length = 200

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V    +L+ VSGG DS      LH  L +      +  A+ +D+   R+    E  
Sbjct: 37  IKESVGTNKVLMLVSGGVDSTVCAALLHKALPEE-----QVLAVHIDNGFMRKN---ESL 88

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V     +L +   V+  ++ 
Sbjct: 89  QVEQSLRKLGLKLRVIKARHE 109


>gi|293394889|ref|ZP_06639179.1| GMP synthase [Serratia odorifera DSM 4582]
 gi|291422640|gb|EFE95879.1| GMP synthase [Serratia odorifera DSM 4582]
          Length = 525

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAVARIREQVGEDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R   A   +           +    V  +           +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDHFGLNIVHVPAEERFLSALAGVDEPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQSEVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|205822016|sp|Q12N64|MNMA_SHEDO RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 372

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 44/204 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------- 65
           ++ +     ++V +SGG DS      L     +     +K           E        
Sbjct: 4   IKPIHNGKKVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMK--------NWEEDDTDEYCA 55

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YA 108
           A D+++    VC +L I    V++             A  +  R               A
Sbjct: 56  AADDLKDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKA 115

Query: 109 LISEHAKTINATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
            +      ++A  I   H        D  ++   +R      ++   L  +    +    
Sbjct: 116 FLEFADDILDADYIAMGHYVRRRDNSDGSVQ--MLRGVDGNKDQSYFLYTLSHEQVARS- 172

Query: 163 LWISRPFLRCRREDIRSFLLQRNI 186
                P     + ++R    Q  +
Sbjct: 173 ---LFPVGELEKHEVRDIAKQMGL 193


>gi|91793184|ref|YP_562835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella denitrificans OS217]
 gi|91715186|gb|ABE55112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shewanella denitrificans OS217]
          Length = 377

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 44/204 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------- 65
           ++ +     ++V +SGG DS      L     +     +K           E        
Sbjct: 9   IKPIHNGKKVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMK--------NWEEDDTDEYCA 60

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YA 108
           A D+++    VC +L I    V++             A  +  R               A
Sbjct: 61  AADDLKDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKA 120

Query: 109 LISEHAKTINATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
            +      ++A  I   H        D  ++   +R      ++   L  +    +    
Sbjct: 121 FLEFADDILDADYIAMGHYVRRRDNSDGSVQ--MLRGVDGNKDQSYFLYTLSHEQVARS- 177

Query: 163 LWISRPFLRCRREDIRSFLLQRNI 186
                P     + ++R    Q  +
Sbjct: 178 ---LFPVGELEKHEVRDIAKQMGL 198


>gi|224061092|ref|XP_002187518.1| PREDICTED: guanine monphosphate synthetase [Taeniopygia guttata]
          Length = 693

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKDRVGSSKVLVLLSGGVDSTVCTALL-----NRALNREQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   VV+  +S
Sbjct: 282 AVEEALRKLGIHVKVVNAAHS 302


>gi|157813146|gb|ABV81318.1| putative GMP synthetase [Podura aquatica]
          Length = 220

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +RS+V    +L+ +SGG DS      L   L +      +  A+ +D+  LR+    E  
Sbjct: 37  IRSVVQNKQVLMLLSGGVDSTVCAALLKKALRED-----QIIAVHIDNGFLRKN---ESE 88

Query: 72  YVSDVCSRLRIAHSVVS 88
            V     +L +   VV 
Sbjct: 89  NVEKSLVKLGLKIHVVK 105


>gi|329963139|ref|ZP_08300919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
 gi|328529180|gb|EGF56110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides fluxus YIT 12057]
          Length = 359

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 53/199 (26%), Gaps = 63/199 (31%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYV 73
             +LV +SGG DS    + L     +        +G     A                  
Sbjct: 6   KRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVWGDKPVDAC----------------- 48

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
            ++   + I H +   +++  +  +       R+ R             + ++ E A  +
Sbjct: 49  -ELAESMGIGHYIADERDAFRRIIVQDFIDEYRQGRTPNPCVMCNPMFKFRILMEWADKL 107

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---------- 167
               I T H              R     G       D    D + ++ R          
Sbjct: 108 GCKYIATGH------------YTRLEEIDGKVYIIAGDDDKKDQSYFLWRLGQDVLKRCI 155

Query: 168 -PFLRCRREDIRSFLLQRN 185
            P     +  +R +L  + 
Sbjct: 156 FPLGTYTKPQVRGYLRDKG 174


>gi|154484342|ref|ZP_02026790.1| hypothetical protein EUBVEN_02055 [Eubacterium ventriosum ATCC
           27560]
 gi|149734819|gb|EDM50736.1| hypothetical protein EUBVEN_02055 [Eubacterium ventriosum ATCC
           27560]
          Length = 263

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 38/182 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSR 79
           ++ +A+SGG DS+ L+              +K          +    K +      +C +
Sbjct: 28  NVAIALSGGVDSVFLVYMAKKYAKSVKAYFVKSV-------FQPEFEKKDAE---KICRQ 77

Query: 80  LRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           L +   +++      +             ++  +  I E AK    T+I+      D   
Sbjct: 78  LGVDLKILNVDVLSNKLVTDNPVNRCYYCKQGVFGTILEAAKNDGMTVILDGTNASDDA- 136

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCED 191
                      +   G+  + +         +  P       + +IR    +  +     
Sbjct: 137 -----------DDRPGMKALQEM-------KVLSPLRMCGYVKSEIRKQSKEAGLFVYNK 178

Query: 192 PS 193
           PS
Sbjct: 179 PS 180


>gi|111023165|ref|YP_706137.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodococcus jostii RHA1]
 gi|110822695|gb|ABG97979.1| GMP synthase (glutamine-hydrolyzing)/ GMP synthase [Rhodococcus
           jostii RHA1]
          Length = 523

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKD--E 69
           VR  V     +  +SGG DS     A+ + L  R+ G    + + VDH L R   +   E
Sbjct: 212 VREQVGDGKAICGLSGGVDS-----AVAAALVQRAIGD-NLTCVFVDHGLMRAGERAQVE 265

Query: 70  VRYVSDVCSRLRIAHSVVSWK--------NSKPQTGLMAAAREARYALISEHAKTINATL 121
             +V+   ++L    +V +           S P+T      RE   +     +  +    
Sbjct: 266 QDFVAATGAKL---ITVDAADTFIGELAGVSDPETKRKIIGREFIRSFEGAVSDVLGENA 322

Query: 122 IMTAHTFDDQLE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCR 173
              AH   D +E     T+Y          G            +  DL   +  P     
Sbjct: 323 ---AH--GDTVEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLQFTLVEPLRLLF 377

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 378 KDEVRAVGRELGLP 391


>gi|325265024|ref|ZP_08131751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. D5]
 gi|324029714|gb|EGB91002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sp. D5]
          Length = 356

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 46/200 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDHCLRET--------A 66
           + ++V +SGG DS      L     D         + +  A+      +E         A
Sbjct: 2   SKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAV------QEENGGCCGLSA 55

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALI 110
            ++ R V    + L I + V+++K    +                    A  R  ++  +
Sbjct: 56  VEDARRV---AAELEIPYYVMNFKQEFKEHVIDYFVEEYRNGRTPNPCIACNRYVKWESL 112

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WIS 166
              +  I A  I T H        V + + R    +   L+      LY+L         
Sbjct: 113 LHRSMAIGAEYIATGH----YARVVKLDNGRFTLRRSATLAKDQTYALYNLTQEQLEHTL 168

Query: 167 RPFLRCRREDIRSFLLQRNI 186
            P     ++++R    +  +
Sbjct: 169 MPVGEYSKDEVRRIAEKIGL 188


>gi|293611169|ref|ZP_06693467.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826420|gb|EFF84787.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124118|gb|ADY83641.1| GMP synthetase (glutamine aminotransferase) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 522

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LREQIGNEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINAT 120
                   + I   V+     +           P+       RE       E  K     
Sbjct: 272 --QMFAENMGI--RVIRADAEQRFLTALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPEDLAFELVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|87198069|ref|YP_495326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|123487802|sp|Q2G2Z1|MNMA_NOVAD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|87133750|gb|ABD24492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 384

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 47/200 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET---AKDEVRYV 73
             I+VA+SGG DS  +     +  ++     ++      D+     R+    A D++R  
Sbjct: 23  RRIVVAMSGGVDSSVVAGLAAATGAEVIGVTLQLY----DYGAATGRKGACCAGDDIRDA 78

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------AR------YALISEHAKTI 117
             V  RL IAH V   ++S  +  +   A +           R      +  +   A+ +
Sbjct: 79  RAVADRLGIAHYVFDHESSFREEVVERFADDYLSGRTPIPCVRCNMGPKFTDLLAMAREL 138

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLWISR 167
            A  + T H             +R     G  L    D              +   ++  
Sbjct: 139 GADCLATGH-----------YVRRVMGPAGPELHRAVDPARDQSYFLYGTTEEQLAFLRF 187

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + + R    +  ++
Sbjct: 188 PLGGLPKTETRLIAEELGLA 207


>gi|254166597|ref|ZP_04873451.1| GMP synthase, C-terminal domain [Aciduliprofundum boonei T469]
 gi|289596163|ref|YP_003482859.1| GMP synthase, large subunit [Aciduliprofundum boonei T469]
 gi|197624207|gb|EDY36768.1| GMP synthase, C-terminal domain [Aciduliprofundum boonei T469]
 gi|289533950|gb|ADD08297.1| GMP synthase, large subunit [Aciduliprofundum boonei T469]
          Length = 312

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 64/194 (32%), Gaps = 31/194 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE ++  +R        ++A SGG DS    + +H  + D      K  AI VD    
Sbjct: 10  EKIEELKNEIR-----GKAIIACSGGVDSTVAAVLVHKAIGD------KLLAIFVDTGFM 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT--GLMAAAREARY-------ALISEH 113
           R+    E+     + SR+ + + +V       +   G+     + R         +    
Sbjct: 59  RKNEAKEID---GLFSRMGLNYKIVDASREFIEALKGVEDP-EKKRKIIGAKFIEVFERE 114

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+   A  ++      D +E              +        +   +NL +  P     
Sbjct: 115 AEEFGAEYLVQGTIAPDWIE------SGGGLRDTIKSHHNVGGLPEKMNLKLVEPLRELY 168

Query: 174 REDIRSFLLQRNIS 187
           ++++R      N+ 
Sbjct: 169 KDEVREIARFFNLE 182


>gi|172056478|ref|YP_001812938.1| GMP synthase, large subunit [Exiguobacterium sibiricum 255-15]
 gi|254800098|sp|B1YIZ1|GUAA_EXIS2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|171988999|gb|ACB59921.1| GMP synthase, large subunit [Exiguobacterium sibiricum 255-15]
          Length = 514

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L A+SGG DS  +   +H+ + D      + + + VDH  LR+    E  
Sbjct: 213 IKEEVGDKKVLCALSGGVDSSVVAALIHAAIGD------QLTCMFVDHGLLRKG---EAE 263

Query: 72  YV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    +  ++         S P+        E  Y    E +K  +   
Sbjct: 264 SVMKTFADHFHMNVIKIDAQDRFLNKLKGISDPEQKRKIIGNEFVYVFDEEASKLTDMDF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 324 LAQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDMQFKLIEPINTLFKDEVRELG 377

Query: 182 LQRNIS 187
            +  +S
Sbjct: 378 KELGLS 383


>gi|157813156|gb|ABV81323.1| putative GMP synthetase [Antheraea paukstadtorum]
          Length = 199

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 17/122 (13%)

Query: 2   FLSPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             S  ES   ++R  V     +LV VSGG DS      L + L +      +  A+ +D+
Sbjct: 26  LRSRRESCLQYIRDTVGDTNKVLVLVSGGVDSTVCAALLRTALRED-----QVIALHIDN 80

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISE 112
              R+    E   V      L +   VV+  +          ++G    A   R+  +  
Sbjct: 81  GFMRKN---ESAKVERCLRELGVRLHVVNAAHQFAVGSTVIRESGAGGVAGRVRHTPLLC 137

Query: 113 HA 114
           HA
Sbjct: 138 HA 139


>gi|330836254|ref|YP_004410895.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM
          17374]
 gi|329748157|gb|AEC01513.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM
          17374]
          Length = 357

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSD---------RSFGKIKFSAISVDHCLRETAKDEVR 71
           ILV +SGG DS      L     +         +        A   + C +   ++E+ 
Sbjct: 2  KILVGMSGGIDSSVAAWLLKQQGYEVIGATMSIWKEGTPYNGPA--GNSCYQPETQEELA 59

Query: 72 YVSDVCSRLRIAHSVVSWKN 91
           + ++C ++ I H VV  ++
Sbjct: 60 EIQEICRKIGIPHVVVDCQD 79


>gi|226365671|ref|YP_002783454.1| GMP synthase [Rhodococcus opacus B4]
 gi|226244161|dbj|BAH54509.1| GMP synthetase [Rhodococcus opacus B4]
          Length = 523

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKD--E 69
           VR  V     +  +SGG DS     A+ + L  R+ G    + + VDH L R   +   E
Sbjct: 212 VREQVGDGKAICGLSGGVDS-----AVAAALVQRAIGD-NLTCVFVDHGLMRAGERAQVE 265

Query: 70  VRYVSDVCSRLRIAHSVVSWK--------NSKPQTGLMAAAREARYALISEHAKTINATL 121
             +V+   +RL    +V +           S P+T      RE   +     +  +    
Sbjct: 266 QDFVAATGARL---ITVDAADTFIGELAGVSDPETKRKIIGREFIRSFEGAVSDVLGENA 322

Query: 122 IMTAHTFDDQLE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCR 173
              AH   D +E     T+Y          G            +  DL   +  P     
Sbjct: 323 ---AH--GDTVEFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLQFTLVEPLRLLF 377

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 378 KDEVRAVGRELGLP 391


>gi|332366914|gb|EGJ44655.1| GMP synthase [Streptococcus sanguinis SK1059]
          Length = 520

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|317473871|ref|ZP_07933151.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909948|gb|EFV31622.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 365

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVDHCLRETAKDEVRYVSDVC 77
           +I V +SGG DS  ++  L       S   IK     A  +D     +A++++   S V 
Sbjct: 2   NIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKIGKDDADYMD----CSAEEDLEMASAVA 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISEHAKTINATL 121
            R  ++  VV             A  + R  L                   +A   +   
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFGCFERYAGK-DFDF 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLRCRRE 175
             T H       T+           G  L  + D   +   +       +  P     ++
Sbjct: 117 TATGH----YAATILQN---GKVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169

Query: 176 DIRSFLLQRNIS 187
           ++R   L+  + 
Sbjct: 170 EVRDIALKAKLP 181


>gi|218130411|ref|ZP_03459215.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697]
 gi|217987412|gb|EEC53742.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697]
          Length = 365

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 58/192 (30%), Gaps = 37/192 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVDHCLRETAKDEVRYVSDVC 77
           +I V +SGG DS  ++  L       S   IK     A  +D     +A++++   S V 
Sbjct: 2   NIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKIGKDDADYMD----CSAEEDLEMASAVA 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISEHAKTINATL 121
            R  ++  VV             A  + R  L                   +A   +   
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFGCFERYAGK-DFDF 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLRCRRE 175
             T H       T+           G  L  + D   +   +       +  P     ++
Sbjct: 117 TATGH----YAATILQN---GKVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169

Query: 176 DIRSFLLQRNIS 187
           ++R   L+  + 
Sbjct: 170 EVRDIALKAKLP 181


>gi|327470051|gb|EGF15515.1| GMP synthase [Streptococcus sanguinis SK330]
          Length = 520

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVSDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 NMLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|302544557|ref|ZP_07296899.1| GMP synthase (Glutamine amidotransferase) [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462175|gb|EFL25268.1| GMP synthase (Glutamine amidotransferase) [Streptomyces
           himastatinicus ATCC 53653]
          Length = 528

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 68/204 (33%), Gaps = 29/204 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E     +R  V     +  +SGG DS      +   + D      + + + VDH L 
Sbjct: 208 NVVEESVAAIREQVGTKRAICGLSGGVDSAVAAALVQKAIGD------QLTCVYVDHGLM 261

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   + ++          R+          +   A 
Sbjct: 262 RKGESEQVEKDFVAATGVQLKVVEAEQRFLDALAGVSDPEEKRKIIGREFIRVFEQAQAE 321

Query: 121 L-------------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           L             ++    + D +E+             +        +  D+   +  
Sbjct: 322 LVAEAGAAGEAVEFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDIEFQLVE 376

Query: 168 PFLRCRREDIRSFLLQRNISWCED 191
           P  R  ++++R+   +  +   ED
Sbjct: 377 PLRRLFKDEVRNVGQELGLP--ED 398


>gi|322382666|ref|ZP_08056530.1| GMP synthase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153364|gb|EFX45787.1| GMP synthase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 512

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 30/188 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + +H  + D      + + + +DH  LR   KDE  
Sbjct: 211 IREQVGDRKVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFIDHGLLR---KDEAE 261

Query: 72  -----YVSDVCSRLRIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINA 119
                +V      +++       +      G+            E  Y    E A     
Sbjct: 262 GVMETFVGKF--DMKVIKIDARDRFLGKLAGVEDPEQKRKIIGNEFIYVFEEESAHIGEF 319

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +   +   +  P     ++++R 
Sbjct: 320 DFLAQGTLYTDIVE------SGTDTAQTIKSHHNVGGLPEGMRFELIEPLKALFKDEVRK 373

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 374 VGEECGLP 381


>gi|296273590|ref|YP_003656221.1| GMP synthase large subunit [Arcobacter nitrofigilis DSM 7299]
 gi|296097764|gb|ADG93714.1| GMP synthase, large subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 511

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 59/185 (31%), Gaps = 23/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L  VSGG DS  +   L   + D      +   + VD+  LR     E  
Sbjct: 209 IQDQVGDKKVLCGVSGGVDSSVVATLLAEAIGD------QLIPVFVDNGLLRAN---ERE 259

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
            V  +     +    V               P+T               E  K      +
Sbjct: 260 QVEAMFKARGVPLITVDATEQFLSKLAGVTDPETKRKIIGETFIKVFDEEAKKHDGIEFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ D + +D    +  P     ++++R   L
Sbjct: 320 AQGTLYTDVIESVSVKGPSKTIKSHHNVGGLPDWMTFD----LIEPLREIFKDEVRLLGL 375

Query: 183 QRNIS 187
           +  I 
Sbjct: 376 ELGIP 380


>gi|289741327|gb|ADD19411.1| GMP synthase [Glossina morsitans morsitans]
          Length = 683

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    +++  V    +L+ VSGG DS      L   L        +  A+ VD+   R  
Sbjct: 216 EECLKYIKDKVGKNKVLLLVSGGVDSTVCAALLRHAL-----HPSQIIAVHVDNGFMR-- 268

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
            KDE   V      + I   V  
Sbjct: 269 -KDESEKVEKSLRDIGIDLIVRK 290


>gi|167464930|ref|ZP_02330019.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 494

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 30/188 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + +H  + D      + + + +DH  LR   KDE  
Sbjct: 193 IREQVGDRKVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFIDHGLLR---KDEAE 243

Query: 72  -----YVSDVCSRLRIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINA 119
                +V      +++       +      G+            E  Y    E A     
Sbjct: 244 GVMETFVGKF--DMKVIKIDARDRFLGKLAGVEDPEQKRKIIGNEFIYVFEEESAHIGEF 301

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +   +   +  P     ++++R 
Sbjct: 302 DFLAQGTLYTDIVE------SGTDTAQTIKSHHNVGGLPEGMRFELIEPLKALFKDEVRK 355

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 356 VGEECGLP 363


>gi|309389860|gb|ADO77740.1| GMP synthase (glutamine-hydrolyzing) [Halanaerobium praevalens DSM
           2228]
          Length = 512

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 29/195 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    ++  +SGG DS      +H  + D      + + I VDH  LR+
Sbjct: 203 IEEEIARIRKQVGQGKVICGLSGGVDSAVASAIVHKAIGD------QLTCIFVDHGLLRK 256

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAK 115
               E   V         I    V  K             EA+          +  E A+
Sbjct: 257 G---EAEQVKRTFGEEFNIPLIYVDAKKRFLDRLAGVTEPEAKRKIIGDEFIQVFDEEAE 313

Query: 116 TI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRC 172
            I +   ++    + D +E+          +K   +        +  ++NL +  P    
Sbjct: 314 KIKDVGYLVQGTIYSDVIES-------GGTDKAATIKSHHNVGGLPEEMNLELVEPLRFL 366

Query: 173 RREDIRSFLLQRNIS 187
            ++++R       + 
Sbjct: 367 FKDEVRKIGEVLGLP 381


>gi|294102033|ref|YP_003553891.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Aminobacterium colombiense DSM 12261]
 gi|293617013|gb|ADE57167.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Aminobacterium colombiense DSM 12261]
          Length = 352

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 56/187 (29%), Gaps = 25/187 (13%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              +LV +SGG DS    + L     +        S         + +  E R  +D+  
Sbjct: 2   KKKVLVGMSGGLDSAVTSLLLKKQGYEVVGVFFALSGA-------DESVAE-RQAADLAQ 53

Query: 79  RLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTINATLI 122
           +L I   V   +    +  L    +A E               ++ L+   A+      +
Sbjct: 54  KLDIKFEVYDGRELFQKNVLTKLLSAYEKGMTPNPCILCNPSVKFKLLFFLAEQKAIPYV 113

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T H      E       R   EK    S M   +  +    I  P    R+E++R    
Sbjct: 114 ATGHYARIVEEESGPAIARGVDEKKDQ-SYMLYRLPREWLSSIVFPLGDLRKEEVREIAK 172

Query: 183 QRNISWC 189
                W 
Sbjct: 173 SFLPEWV 179


>gi|327480910|gb|AEA84220.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri DSM 4166]
          Length = 362

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 48/196 (24%)

Query: 23  LVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
           +V +SGG DS    LL+       +  F K             E        AK+++   
Sbjct: 2   IVGMSGGVDSSVSALLLLEQGYQVEGLFMK----------NWEEDDGTEYCTAKEDLADA 51

Query: 74  SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTI 117
             VC R+ I     +     W N          A           RE ++    ++A  +
Sbjct: 52  QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 111

Query: 118 NATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRPFLR 171
            A LI T H     D       R  R    KG+  +      L+ +          P   
Sbjct: 112 GADLIATGHYVRRRD-------RDGRSELLKGLDPNKDQSYFLHAVGGEQLAKTLFPVGE 164

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R+   +  ++
Sbjct: 165 LEKPEVRAIAEKHGLA 180


>gi|310826721|ref|YP_003959078.1| GMP synthase [Eubacterium limosum KIST612]
 gi|308738455|gb|ADO36115.1| GMP synthase [Eubacterium limosum KIST612]
          Length = 512

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 30/198 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +L A+SGG DS      +H  + D      + + I VDH  L
Sbjct: 202 NFIEEQIKAIRERVGDKKVLCALSGGVDSSVASTLVHRAIGD------QLTCIFVDHGLL 255

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR-------YALISEH 113
           R+   D+V  +    +R ++    V+ ++       G+    R+ +            E 
Sbjct: 256 RKDEGDQVEEIFK--NRFKMNFIRVNCEDRFLGKLAGIDDPERKRKIIGEEFIRVFEEES 313

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFL 170
           +K  N   ++    + D +E            K   +         +  D++  +  P  
Sbjct: 314 SKLKNIDYLLQGTIYPDVIE---------SGTKNAAVIKSHHNVGGLPEDVDFELIEPLR 364

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R    +  +  
Sbjct: 365 NLFKDEVRELGEELGLDH 382


>gi|254283074|ref|ZP_04958042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR51-B]
 gi|219679277|gb|EED35626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR51-B]
          Length = 363

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 42/135 (31%), Gaps = 31/135 (22%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
           SL     ++V +SGG DS    + L           +K           E        AK
Sbjct: 2   SLNANTKVIVGMSGGVDSSVSALLLRDAGYRVEGLFMK--------NWEEDDGTEYCTAK 53

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
           +++   S V  RL I     +     W N          A           RE ++    
Sbjct: 54  EDLADASSVADRLGIPLHEANFAAEYWDNVFEHFLSEYRAGRTPNPDILCNREIKFRAFI 113

Query: 112 EHAKTINATLIMTAH 126
           ++A  + A  I T H
Sbjct: 114 DYATLLGADCIATGH 128


>gi|123969310|ref|YP_001010168.1| PP family ATPase [Prochlorococcus marinus str. AS9601]
 gi|123199420|gb|ABM71061.1| ATP-utilizing enzymes of the PP-loop superfamily [Prochlorococcus
           marinus str. AS9601]
          Length = 274

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 38/191 (19%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++R ++++L     + +A SGG DS  +       L  ++      S    +  LRE AK
Sbjct: 18  TIRRYIKNL---DSVCIAYSGGVDSTLVTSLAFEQLGSKAIAITGISPALAN-TLREEAK 73

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATL 121
            + +++        + H  +          SK       A ++  +   +  +K +N  +
Sbjct: 74  SQAKWI-------GVKHLEIKTSELDQSSYSKNPKDRCFACKKELHKHTTYLSKKLNYKI 126

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRS 179
           ++     DD                   L      I       +  P    +  ++DIR 
Sbjct: 127 VLDGVNVDD-------------------LKDYRPGIQASKQAGVISPLAKFKFSKKDIRD 167

Query: 180 FLLQRNISWCE 190
                   W +
Sbjct: 168 ISRALGFPWWD 178


>gi|317484664|ref|ZP_07943565.1| tRNA methyl transferase [Bilophila wadsworthia 3_1_6]
 gi|316924020|gb|EFV45205.1| tRNA methyl transferase [Bilophila wadsworthia 3_1_6]
          Length = 356

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 62/191 (32%), Gaps = 40/191 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDVCS 78
           I VAVSGG+DS   L A+ S+  +     I F A      L++      D V  +   C 
Sbjct: 3   IAVAVSGGADS---LYAMASLQREYPGQVIAFHA------LQKETSPEDDPVPGLEVSCR 53

Query: 79  RLRIAHSVVSWKNS---------------KPQTGLMAAAREA-RYALISEHAKTINATLI 122
            L +   ++  + +                             ++ L  + A+ + A  +
Sbjct: 54  ALGVPLHILDLQEAFFRQIVRPFAESYAHGETPNPCVRCNALVKFGLWMDEARKLGADRL 113

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR------PFLRCRRED 176
            T H              R       G     D   +     ISR      P  R R+ +
Sbjct: 114 ATGHYVS------LAEHPRYGMALHQGADEAKDQSYFLALTPISRLKNAVFPLARVRKSE 167

Query: 177 IRSFLLQRNIS 187
           +R+ L +  +S
Sbjct: 168 VRAALAEWGLS 178


>gi|300691576|ref|YP_003752571.1| GMP synthetase [Ralstonia solanacearum PSI07]
 gi|299078636|emb|CBJ51294.1| GMP synthetase [Ralstonia solanacearum PSI07]
          Length = 547

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 25/199 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 213 MRDHIEEAVKAIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 266

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 267 LLRLN---EGQMVLDMFEG-RLHARVVHVDASEQFLGHLAGVTDPEAKRKIIGREFVEVF 322

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 323 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 379

Query: 170 LRCRREDIRSFLLQRNISW 188
               ++++R   +   +  
Sbjct: 380 RDLFKDEVRELGVALGLPP 398


>gi|281201631|gb|EFA75840.1| GMP synthetase [Polysphondylium pallidum PN500]
          Length = 689

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 11/79 (13%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDE 69
           ++R  V    +LV VSGG DS        + L  ++ G  +  A+ +D+     E +   
Sbjct: 240 YIRETVGDGKVLVLVSGGVDSTV-----CAALIAKAIGPERVIALHIDNGFMRHEESAR- 293

Query: 70  VRYVSDVCSRLRIAHSVVS 88
              V      L +   VV 
Sbjct: 294 ---VEQALKVLGLRLIVVD 309


>gi|262306061|gb|ACY45623.1| gln amidotransferase [Lepas anserifera]
          Length = 197

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E +   +R+ V    +L+ VSGG DS      LH  LS       +  A+ +D+   R+ 
Sbjct: 31  EDLLNLIRATVGTQKVLLLVSGGVDSTVCAALLHKALS-----PEQVVAVHIDNGFMRKN 85

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS 92
              E   V     R+ +   V++ ++S
Sbjct: 86  ---ESLQVEQSLKRIGLKLRVINARHS 109


>gi|255320629|ref|ZP_05361806.1| gmp synthase [Acinetobacter radioresistens SK82]
 gi|262380738|ref|ZP_06073891.1| GMP synthase domain-containing protein [Acinetobacter
           radioresistens SH164]
 gi|255302245|gb|EET81485.1| gmp synthase [Acinetobacter radioresistens SK82]
 gi|262297686|gb|EEY85602.1| GMP synthase domain-containing protein [Acinetobacter
           radioresistens SH164]
          Length = 522

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LREQIGNEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+     +   G +A             RE       E  K     
Sbjct: 272 --QMFAQNMGI--RVIRAAAEERFLGALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|225715026|gb|ACO13359.1| ATP-binding domain-containing protein 3 [Esox lucius]
          Length = 202

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 30/88 (34%)

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ETV M   R    +    + +      +  +   +P      ++I  +   +
Sbjct: 25  GHNADDVAETVLMNVLRGDIARLRRCTAISTASEGEGVVPRCKPLKYAYEKEIVLYAYFK 84

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +            R   R F++D++
Sbjct: 85  KLDYFSTECIYSPNAYRGHARTFLKDLE 112


>gi|262306109|gb|ACY45647.1| gln amidotransferase [Stenochrus portoricensis]
          Length = 196

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R ++    +L+ +SGG DS      LH  L +      +  AI +++   R+    E 
Sbjct: 36  YIRKIIGSNKVLMLLSGGVDSTVCAALLHKALKED-----QVIAIHINNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V     RL +   V+ 
Sbjct: 88  LQVEQSLKRLGLKLKVID 105


>gi|260430380|ref|ZP_05784353.1| ExsB protein [Citreicella sp. SE45]
 gi|260418409|gb|EEX11666.1| ExsB protein [Citreicella sp. SE45]
          Length = 233

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 36/188 (19%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS+ L      +       ++    +S D+  R   + E+ + +    RL + H 
Sbjct: 7   CSGGLDSVSLAHI---IADQHRLTRL----VSFDYGQRH--RKELDFAAAAARRLNVPHH 57

Query: 86  VVSWKNSKPQTGLMA------------AAREAR-----------YALISEHAKTINATLI 122
           ++  +         A            A    R            A+    A       +
Sbjct: 58  LIDMRGIGASLSGSALTDDIDVPDGHYAEETMRITVVPNRNAIMLAIGFGVAAANGDEAV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            TA    D          R    +            Y  ++ +  PF+   + DI     
Sbjct: 118 ATAVHGGDH---FIYPDCRPAFTQAFDAMQQAALDGYA-SVRLHTPFVERSKADIVRAGA 173

Query: 183 QRNISWCE 190
                + E
Sbjct: 174 AHGTPFAE 181


>gi|239918131|ref|YP_002957689.1| GMP synthase (glutamine-hydrolyzing) [Micrococcus luteus NCTC 2665]
 gi|259647685|sp|C5CBZ4|GUAA_MICLC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|239839338|gb|ACS31135.1| GMP synthase (glutamine-hydrolyzing) [Micrococcus luteus NCTC 2665]
          Length = 539

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 61/191 (31%), Gaps = 24/191 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  +     +  +SGG DS     A+ + L  R+ G  + + + VDH L RE    E+ 
Sbjct: 225 IREQIGDKRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVYVDHGLMREGESAEIE 278

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM-----AAAREARYALISEHAKTINATLIMTAH 126
                      A  V+        + L       A R+          +   A +++ + 
Sbjct: 279 --QAFGEAHGGARLVMVDAREDFLSALAGVTDPEAKRKIIGERFIRTFEKAQADIVLESE 336

Query: 127 TFDDQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRRED 176
              D  E       T+Y          G            +  D+   +  P     +++
Sbjct: 337 HDPDATEVRFLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPDDIEFELCEPLRELFKDE 396

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 397 VRAVGAELGLP 407


>gi|330832790|ref|YP_004401615.1| GMP synthase [Streptococcus suis ST3]
 gi|329307013|gb|AEB81429.1| GMP synthase [Streptococcus suis ST3]
          Length = 516

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 66/198 (33%), Gaps = 32/198 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE+    +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  L
Sbjct: 206 NFIETEIEKIRQTVGDKKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGLL 259

Query: 63  RETAKDEVRYVSDVCSRLRIAH--SVVSWKNSKPQTGLMAA-----------AREARYAL 109
           R+   D       V   L      +++    +K    L+A              E  Y  
Sbjct: 260 RKNEGD------QVMEMLGGKFGLNIIRVDAAKRFLDLLAGVSDPEKKRKIIGNEFVYVF 313

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E +K  +   +     + D +E            + +        +  D+   +  P 
Sbjct: 314 DDEASKLTDVEFLAQGTLYTDIIE------SGTDTAETIKSHHNVGGLPEDMQFKLIEPL 367

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R+      + 
Sbjct: 368 NTLFKDEVRALGTALGMP 385


>gi|296284927|ref|ZP_06862925.1| exsB protein [Citromicrobium bathyomarinum JL354]
          Length = 231

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 60/205 (29%)

Query: 19  PAHILVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           P ++  A+ SGG DSM       ++  +R     +  A+++D+  R     E+     + 
Sbjct: 6   PDNVAAALLSGGLDSMV----AAALARERGH---EVHALTIDYGQRHV--REIEAARKIA 56

Query: 78  SRLRIA-HSVVSWKNSKPQTGLMAA-------------------AREARYALISEH-AKT 116
             L +A H  ++    K     + A                   AR   +  ++   A++
Sbjct: 57  KALGLASHREITLDLRKFGGSALTADIDVPKDGVDGTIPVTYVPARNLVFLALTTAFAES 116

Query: 117 INATLIMTAHTFDD--------------QLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           I A  I+      D                ET   R       +G G +           
Sbjct: 117 IGAGRIVIGVNALDYSGYPDCRPEFIASFAETA--RLGTKAGIEGGGFA----------- 163

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             I  P     + +I S   +  + 
Sbjct: 164 --IDAPLQFLGKAEIASEANRLGLD 186


>gi|227432364|ref|ZP_03914356.1| GMP synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351885|gb|EEJ42119.1| GMP synthase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 514

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R +     +L+ +SGG DS  + + LH  + D      + ++I VDH  LR+   D+V
Sbjct: 213 IREIAGDKKVLLGLSGGVDSSVVGVLLHRAIGD------QLTSIFVDHGLLRKNEADQV 265


>gi|20093491|ref|NP_613338.1| ATPase [Methanopyrus kandleri AV19]
 gi|19886320|gb|AAM01268.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 305

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 41/193 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCL----RETAKDEVRYVS 74
           ++V  SGG DS+  L+ L  +        ++   + V+   H      RE    EV    
Sbjct: 78  VVVGFSGGKDSVTCLLMLEPLTRRLG---LRIRPVLVETRLHGDPIWGREG--REV--CE 130

Query: 75  DVCSRLRI------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
           ++C  L            V     +              +LI           ++ AHT 
Sbjct: 131 EICRSLGFQLEYVEPREDVGELAEEHGESPCLIC-----SLIRRRELRERGDKLVLAHTL 185

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-----------NLWISRPFLRCRREDI 177
           DD + T         A KG GL+ +                      I RP +R      
Sbjct: 186 DDAIVTAM-----ASAIKGEGLNILRPVEELGGMRSEYVDYDFPETTIVRPMIRVPEVWT 240

Query: 178 RSFLLQRNISWCE 190
           R    +  +   E
Sbjct: 241 RLIPGEVGLPIFE 253


>gi|146318527|ref|YP_001198239.1| GMP synthase [Streptococcus suis 05ZYH33]
 gi|146320723|ref|YP_001200434.1| GMP synthase [Streptococcus suis 98HAH33]
 gi|223932136|ref|ZP_03624140.1| GMP synthase, large subunit [Streptococcus suis 89/1591]
 gi|253751654|ref|YP_003024795.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis SC84]
 gi|253753556|ref|YP_003026697.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis P1/7]
 gi|253755631|ref|YP_003028771.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis BM407]
 gi|302023758|ref|ZP_07248969.1| GMP synthase [Streptococcus suis 05HAS68]
 gi|145689333|gb|ABP89839.1| GMP synthase, PP-ATPase domain/subunit [Streptococcus suis 05ZYH33]
 gi|145691529|gb|ABP92034.1| GMP synthase, PP-ATPase domain/subunit [Streptococcus suis 98HAH33]
 gi|223899117|gb|EEF65474.1| GMP synthase, large subunit [Streptococcus suis 89/1591]
 gi|251815943|emb|CAZ51557.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis SC84]
 gi|251818095|emb|CAZ55889.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis BM407]
 gi|251819802|emb|CAR45737.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus suis P1/7]
 gi|292558297|gb|ADE31298.1| GMP synthase [Streptococcus suis GZ1]
 gi|319758080|gb|ADV70022.1| GMP synthase [Streptococcus suis JS14]
          Length = 516

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 66/198 (33%), Gaps = 32/198 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE+    +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  L
Sbjct: 206 NFIETEIEKIRQTVGDKKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGLL 259

Query: 63  RETAKDEVRYVSDVCSRLRIAH--SVVSWKNSKPQTGLMAA-----------AREARYAL 109
           R+   D       V   L      +++    +K    L+A              E  Y  
Sbjct: 260 RKNEGD------QVMEMLGGKFGLNIIRVDAAKRFLDLLAGVSDPEKKRKIIGNEFVYVF 313

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E +K  +   +     + D +E            + +        +  D+   +  P 
Sbjct: 314 DDEASKLTDVEFLAQGTLYTDIIE------SGTDTAETIKSHHNVGGLPEDMQFKLIEPL 367

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R+      + 
Sbjct: 368 NTLFKDEVRALGTALGMP 385


>gi|313903525|ref|ZP_07836915.1| GMP synthase (glutamine-hydrolyzing) [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466078|gb|EFR61602.1| GMP synthase (glutamine-hydrolyzing) [Thermaerobacter subterraneus
           DSM 13965]
          Length = 524

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 61/196 (31%), Gaps = 29/196 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E     +R  +  A  L A+SGG DS    + +H  +        + + + VD   LR 
Sbjct: 213 VEEAVPALRRQLEGARALCALSGGVDSTVAAVLVHRAI------GPRLACVFVDTGLLRA 266

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKN-------------SKPQTGLMAAAREARYALIS 111
               EV  V +    L I   VV  ++             +K +       R        
Sbjct: 267 G---EVEEVQESLVGLGIELRVVDARDRFLAALDGIADPEAKRKAVGETFIRVFEEEARQ 323

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
              +      ++   T+ D +E          A   +        +  DL   +  P   
Sbjct: 324 LAEELGPIPFLVQGTTYPDVIE------SGGGAAATIKSHHNVGGLPPDLAFRLVEPLRY 377

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +  + 
Sbjct: 378 LFKDEVREVGRRLGLP 393


>gi|238894182|ref|YP_002918916.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546498|dbj|BAH62849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 388

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 26  KKVIVGMSGGVDSSVSAYLLLQQGYKVGGLFMKNW----------EEDDGEEYCTAAADL 75

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 76  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 135

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 136 AEDLGADYIATGHYVRRADVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 191

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    + ++
Sbjct: 192 ELEKPQVRKIAEELDL 207


>gi|255544898|ref|XP_002513510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
 gi|223547418|gb|EEF48913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Ricinus communis]
          Length = 497

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 61/200 (30%), Gaps = 44/200 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEVR 71
            I + +SGG DS   L  LH+     +   +K          +E           +++++
Sbjct: 72  RIALLLSGGVDSSVALRLLHAAGHHCTAFYLKIW-------FQEDFENFWSECPWEEDLK 124

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAK 115
           Y   VC ++ I   VV   +   +  +     E R                +    +   
Sbjct: 125 YAKAVCDQVDIPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAIN 184

Query: 116 TINATLIMTAH-----T--FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISR 167
            +    + + H         D+  +   +   +D  +     LS +    L      +  
Sbjct: 185 NMEFDYVASGHYAKVIHPSADEINQPSVLELSKDMVKDQTYFLSHLSQAQLRR----LIF 240

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R      N+ 
Sbjct: 241 PLGGISKDEVRKLATLFNLP 260


>gi|157813148|gb|ABV81319.1| putative GMP synthetase [Speleonectes tulumensis]
          Length = 197

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R  V    +L+ VSGG DS      LH  L +      +  A+ +D+   R   K E 
Sbjct: 36  YIRETVGNNKVLMLVSGGVDSTVCAALLHKALKED-----QVVAVHIDNGFMR---KLES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
            +V     +L +   +++
Sbjct: 88  HHVEQSLRKLGLQLRMIN 105


>gi|156551429|ref|XP_001604269.1| PREDICTED: similar to gmp synthase [Nasonia vitripennis]
          Length = 710

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V  + +L+ VSGG DS      LH  L+     K +  A+ +++   R+    E  
Sbjct: 234 IRETVGNSKVLLLVSGGVDSTVCAALLHKALN-----KDQVIAVHINNGFMRKG---ETP 285

Query: 72  YVSDVCSRLRIAHSVVS 88
            V    +++ I   V++
Sbjct: 286 LVEQSLAQIGIKLQVIN 302


>gi|148980239|ref|ZP_01815947.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrionales bacterium SWAT-3]
 gi|145961333|gb|EDK26642.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrionales bacterium SWAT-3]
          Length = 517

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 70/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + +  H  + D      K + + VD+  L
Sbjct: 204 SIIEDAVARIKEQVGDDEVILGLSGGVDSSVVAMLAHRAIGD------KLTCVFVDNGLL 257

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R   A   +       ++  +    V  ++   +     A  EA+  +I           
Sbjct: 258 RLNEADQVMEM---FGNKFGLNIIKVDAEDRFLKALEGEAEPEAKRKIIGHVFVDIFDEE 314

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLSNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|239827834|ref|YP_002950458.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70]
 gi|239808127|gb|ACS25192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacillus sp. WCH70]
          Length = 371

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 40/197 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YEDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A +I A  + T H       D  E   +R      ++   L+ +  ++L      +  P 
Sbjct: 117 ALSIGADYVATGHYARVEYRD-GEYKMLRGVDQNKDQTYFLNQLGQSVLSK----VMFPI 171

Query: 170 LRCRREDIRSFLLQRNI 186
               +  +R       +
Sbjct: 172 GHLEKAQVRQIAKDAGL 188


>gi|116334036|ref|YP_795563.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Lactobacillus brevis ATCC 367]
 gi|122269280|sp|Q03QJ0|MNMA_LACBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116099383|gb|ABJ64532.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, PP-loop ATPase [Lactobacillus brevis
           ATCC 367]
          Length = 375

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 69/194 (35%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS  + + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVVALRLKQQGYDVIGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V +++ I +  V+++     +  T  +   ++ R             +    ++A  +
Sbjct: 60  AKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYALEL 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  I T H    T D+      MR+     ++   LS +    L      +  P     
Sbjct: 120 GADYIATGHYAQLTRDEAGHAHLMRAVDQNKDQTYFLSQLSTEQL----DRVMFPIGDLV 175

Query: 174 REDIRSFLLQRNIS 187
           +  +R    +  ++
Sbjct: 176 KPQVREIAKEAGLA 189


>gi|87301094|ref|ZP_01083935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 5701]
 gi|87284062|gb|EAQ76015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 5701]
          Length = 376

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 32/198 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSM---GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           +R+      + V +SGG DS     LL+A    +   +   +          L + A   
Sbjct: 1   MRAWPGEHRVAVGLSGGVDSSLTAALLVAAGWQVEGLTLWLMSGKGACCAEGLVDAAG-- 58

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM-------------AAAREARYALISEHAK- 115
                 +C +L + H VV  +    +  +                +R  R    +   + 
Sbjct: 59  ------LCEQLGVPHHVVDSRERFREQIVEFLVQGYEGGVTPLPCSRCNREVKFTPMLEW 112

Query: 116 ---TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRP 168
               +  + I T H    +L     R+ R    +G+ +       LYDL       +  P
Sbjct: 113 AEAELGISRIATGHYARVRLADAGARAGRHQLLRGLDVHKDQSYFLYDLPQAVLARLVFP 172

Query: 169 FLRCRREDIRSFLLQRNI 186
                + D R       +
Sbjct: 173 LGELTKPDTRLEAEALGL 190


>gi|187777304|ref|ZP_02993777.1| hypothetical protein CLOSPO_00856 [Clostridium sporogenes ATCC
           15579]
 gi|187774232|gb|EDU38034.1| hypothetical protein CLOSPO_00856 [Clostridium sporogenes ATCC
           15579]
          Length = 279

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRL 80
           + VA SGG DS  LL A    L D +   I  + +               +   ++ +++
Sbjct: 31  VAVAFSGGVDSTLLLKAAKEALGDNA---ISITIV------SPYIPKWEIKEAKELVNKI 81

Query: 81  RIAHSVVSWKNSKP-QTGLMAAAREARYALIS---EHAKTINATLIMTAHTFDD 130
            I    +     +  +          + ++ +     AK      I+     DD
Sbjct: 82  GIKSYFIEVPMLEEIRFNPEDRCYICKKSVFNKIKCLAKEKGIKYIVDGTNADD 135


>gi|73990460|ref|XP_866440.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 6
           [Canis familiaris]
          Length = 690

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           V+  V  + +LV +SGG DS      L+  LS       +  A+ +D+   R   K E +
Sbjct: 235 VKERVGTSKVLVLLSGGVDSTVCTALLNRALSQD-----QVIAVHIDNGFMR---KRESQ 286

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104
            V +   +L I         +  Q    A  RE
Sbjct: 287 SVEEALKKLGIQREREREAETYRQREKQAPCRE 319


>gi|328884512|emb|CCA57751.1| GMP synthase [Streptomyces venezuelae ATCC 10712]
          Length = 533

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 69/197 (35%), Gaps = 21/197 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R+ V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 213 NVIEEQVAAIRAQVGTKRAVCGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 266

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+     L++  +   +  +          R+          +   A 
Sbjct: 267 RKGETEQVEKDFVASTGVNLKVVDAQERFLTALAGVSDPETKRKIIGREFIRVFEQAQAE 326

Query: 121 LIM-TAHTFDDQLETVYMR------SQRDYAEKGMG---LSGMCDTILYDLNLWISRPFL 170
           ++  +A T +D      ++              G            +  DL   +  P  
Sbjct: 327 IVAESAGTGEDVA--FLVQGTLYPDIVESGGGTGTANIKSHHNVGGLPEDLEFELVEPLR 384

Query: 171 RCRREDIRSFLLQRNIS 187
           +  ++++R    +  + 
Sbjct: 385 QLFKDEVRMVGQELGLP 401


>gi|320168295|gb|EFW45194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capsaspora owczarzaki ATCC 30864]
          Length = 554

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 45/147 (30%), Gaps = 30/147 (20%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAI 56
           L PI        +   P  + V VSGG DS      L     D      +++ ++  +  
Sbjct: 102 LEPIPRSHPTWPAGAPPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDELDETG- 160

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREA------- 105
              HC  E    +       C+ L I    V++     N      L    R         
Sbjct: 161 ---HCTGEQDMRDAAL---SCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPDIL 214

Query: 106 --R----YALISEHAKTINATLIMTAH 126
             R     AL++    +  A  + T H
Sbjct: 215 CNREIKFKALLNVVQTSFGAQFLATGH 241


>gi|303256580|ref|ZP_07342594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderiales bacterium 1_1_47]
 gi|302860071|gb|EFL83148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderiales bacterium 1_1_47]
          Length = 378

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 47/218 (21%)

Query: 1   MFLSPIESVRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M ++ +   R + +   V    ++V +SGG DS      L     +     +K       
Sbjct: 1   MLIANLLKCRDYRKEFCVETKTVVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNW----- 55

Query: 60  HCLRETAKDEVRYVS---------DVCSRLRIAHSVVSWKNSKPQT------GLMAAAR- 103
                   D+  Y S          V   + I    V++                +A R 
Sbjct: 56  -----EDDDDSEYCSSRQDLIDATAVADVIGIDIEAVNFAKEYKDRVFAEFLSEYSAGRT 110

Query: 104 ---------EARYALISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMG 149
                    E ++    +HA  + A  I T H       D   E   ++   +  ++   
Sbjct: 111 PNPDVLCNSEIKFKAFLDHAIRLGADKIATGHYARVRERDGLFE--LLKGVDNTKDQSYF 168

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           L+ +    L         P     + ++R    +  + 
Sbjct: 169 LNRLNQYQLSKAMF----PVGDMCKTEVRRIAEEIGLP 202


>gi|325679422|ref|ZP_08159007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 8]
 gi|324109019|gb|EGC03250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus albus 8]
          Length = 356

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 41/198 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH------CLRET---AKDE 69
              +L A+SGG DS   +  L            + +  ++         +RE    + ++
Sbjct: 3   KKRVLAAMSGGVDSSAAVKLLLD-------KGYEVAGATMHLYNNEDIGIREKNCCSLND 55

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAARE-ARYALISEH 113
           V     V  +L I   V ++ +               S           +  ++    E 
Sbjct: 56  VEDARLVALKLGIDFHVFNFSDEFKMRVMDDFVNTYLSGGTPNPCIECNKHLKFGRFLER 115

Query: 114 AKTINATLIMTAH----TFDD-QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ +    I T H     +D+     +  RS     ++   L GM    L         P
Sbjct: 116 AELLGFDYIATGHYVTSHYDEASGRWLLKRSADRAKDQSYVLYGMTQHQLAHT----IFP 171

Query: 169 FLRCRREDIRSFLLQRNI 186
                + DIR+   +  +
Sbjct: 172 VGDMNKTDIRALAEENGL 189


>gi|114777702|ref|ZP_01452662.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551918|gb|EAU54452.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 515

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 61/193 (31%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I+     +R  V    +++ +SGG DS      LH  + +      + + + VD+  LR 
Sbjct: 204 IDEAVARIREQVGEEEVILGLSGGVDSSVAAALLHRAIGE------QLTCVFVDNGLLR- 256

Query: 65  TAKDEVRYV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E   V       L +    V   +           P+       RE       E A
Sbjct: 257 --LHEAEQVMQTFADNLGVKVIHVDASDEFLKHLAGVTDPEAKRKIIGREFVEVFQQESA 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D +E+      +      +        +   L+L +  P     +
Sbjct: 315 KLPQARWLAQGTIYPDVIES---AGSKTKKAHTIKSHHNVGGLPDTLHLKLLEPLRELFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|110669560|ref|YP_659371.1| argininosuccinate synthase [Haloquadratum walsbyi DSM 16790]
 gi|119361280|sp|Q18E36|ASSY_HALWD RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|109627307|emb|CAJ53797.1| argininosuccinate synthase [Haloquadratum walsbyi DSM 16790]
          Length = 397

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 36/192 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + +A SGG D+   +  L        +G  +   ++VD     T  +E           
Sbjct: 3   RVALAFSGGLDTTVCVSLLKE-----EYGYDEVIGVTVDVGQPATEFEEA---QATADAH 54

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYA------LISEHAKTINATLIMTAHTFDDQLET 134
            I   VV            +    A Y        ++      +   +  A   D     
Sbjct: 55  GIDLHVVDATAEFVDLCFDSVRANATYQGYPLGTALARPIIAESIVSVAKAENCDALA-- 112

Query: 135 VYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDIRSFLLQRNIS---- 187
                   +   G G   +  + +  + +L +  P   L   RE  + +  + N+     
Sbjct: 113 --------HGCTGKGNDQLRFEAVWRNSDLTVIAPIRELELTREWEQEYAAEHNLPVQAG 164

Query: 188 ----WCEDPSNT 195
               W  D +N 
Sbjct: 165 NDGVWSID-TNL 175


>gi|301309337|ref|ZP_07215279.1| GMP synthase [Bacteroides sp. 20_3]
 gi|300832426|gb|EFK63054.1| GMP synthase [Bacteroides sp. 20_3]
          Length = 506

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S IES    ++  +    +++A+SGG DS    + L+  +          + I VDH L
Sbjct: 197 SFIESTVAELKEQLGDDKVILALSGGVDSSVTAVLLNKAIGK------NLTCIFVDHGL 249


>gi|262383282|ref|ZP_06076418.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 2_1_33B]
 gi|262294180|gb|EEY82112.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 2_1_33B]
          Length = 506

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S IES    ++  +    +++A+SGG DS    + L+  +          + I VDH L
Sbjct: 197 SFIESTVAELKEQLGDDKVILALSGGVDSSVTAVLLNKAIGK------NLTCIFVDHGL 249


>gi|255014182|ref|ZP_05286308.1| GMP synthase [Bacteroides sp. 2_1_7]
          Length = 506

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S IES    ++  +    +++A+SGG DS    + L+  +          + I VDH L
Sbjct: 197 SFIESTVAELKEQLGDDKVILALSGGVDSSVTAVLLNKAIGK------NLTCIFVDHGL 249


>gi|189465036|ref|ZP_03013821.1| hypothetical protein BACINT_01380 [Bacteroides intestinalis DSM
           17393]
 gi|189437310|gb|EDV06295.1| hypothetical protein BACINT_01380 [Bacteroides intestinalis DSM
           17393]
          Length = 350

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 68/203 (33%), Gaps = 58/203 (28%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRETAKDEVRYVS 74
           +     +L+ +SGG+DS    + L     + +    +F     D     E + D+     
Sbjct: 1   MKSKKRVLLGMSGGTDSSVAAMLLQEAGYEVTGVTFRFY----DSEGF-EESLDDA---R 52

Query: 75  DVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEHAKTIN 118
            + SRL I H +   +    +       G   +AR          E ++ L+++ A  + 
Sbjct: 53  TLASRLNIPHIIYDARELFRERIIRYFIGEYLSARTPVPCTLCNNELKWPLLAKIADEMG 112

Query: 119 ATLIMTAH---------------TFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
              I T H                 D D+ +T +             L G+   IL  + 
Sbjct: 113 IYWISTGHYVRKVFQDNHYFIAPAADRDKDQTFF-------------LWGLKQDILERM- 158

Query: 163 LWISRPFLRCRREDIRSFLLQRN 185
                P     ++++R++   R 
Sbjct: 159 ---ILPMGDWTKDEVRTYAAGRG 178


>gi|150008447|ref|YP_001303190.1| GMP synthase [Parabacteroides distasonis ATCC 8503]
 gi|256841569|ref|ZP_05547076.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
 gi|298376302|ref|ZP_06986258.1| GMP synthase [Bacteroides sp. 3_1_19]
 gi|226739652|sp|A6LD04|GUAA_PARD8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149936871|gb|ABR43568.1| glutaminne-hydrolyzing GMP synthase [Parabacteroides distasonis
           ATCC 8503]
 gi|256737412|gb|EEU50739.1| GMP synthase domain-containing protein [Parabacteroides sp. D13]
 gi|298267339|gb|EFI08996.1| GMP synthase [Bacteroides sp. 3_1_19]
          Length = 506

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S IES    ++  +    +++A+SGG DS    + L+  +          + I VDH L
Sbjct: 197 SFIESTVAELKEQLGDDKVILALSGGVDSSVTAVLLNKAIGK------NLTCIFVDHGL 249


>gi|319442945|ref|ZP_07992101.1| GMP synthase [Corynebacterium variabile DSM 44702]
          Length = 512

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE+VR     +      +  +SGG DS     A+ + L  R+ G  + + + VDH  LR+
Sbjct: 198 IEAVR---EQVGPEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRK 248

Query: 65  TAKD--EVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
             ++  E  +V+   ++L     R A        S P+    A   E   +     A  +
Sbjct: 249 GEREQVETDFVAATGAKLVTVDEREAFLSKLAGVSDPEAKRKAIGAEFIRSFERAVAGVL 308

Query: 118 N-------ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                      ++    + D +E+             +        +  D+   +  P  
Sbjct: 309 GDAPEGSTVDFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFTLVEPLR 363

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 364 LLFKDEVRAVGRELGLP 380


>gi|229814917|ref|ZP_04445255.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM
           13280]
 gi|229809404|gb|EEP45168.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM
           13280]
          Length = 409

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 26/127 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE----TAKDEVRYVSD 75
             +LVA+SGG DS      L     D     +        H         +  +    + 
Sbjct: 4   KRVLVAMSGGVDSSVTAYLLTQQGYDCLGATMLL------HGDAAPGACGSGSDADDAAA 57

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISEHAKTINA 119
           +C+RL   H V+  + +  +  +                    R  ++  +  +A+  + 
Sbjct: 58  ICARLGFPHEVIDMRETFERHVVEKFVRTYETGRTPNPCIDCNRHLKFDALLSYAREHDC 117

Query: 120 TLIMTAH 126
             I T H
Sbjct: 118 DFIATGH 124


>gi|126465693|ref|YP_001040802.1| phosphoadenosine phosphosulfate reductase [Staphylothermus marinus
           F1]
 gi|126014516|gb|ABN69894.1| phosphoadenosine phosphosulfate reductase [Staphylothermus marinus
           F1]
          Length = 418

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 19/90 (21%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD------HCL 62
            R F+ SL  P  +LV+ SGG DS+ +L       +   +G+     I VD      H  
Sbjct: 204 ARRFLDSLGKPDIVLVSFSGGKDSLVVLHM-----AKMHYGEDMVRGIYVDTGVDFPH-T 257

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           R       +YV ++ + L +   +V     
Sbjct: 258 R-------KYVEEISTMLGLEIDIVRADVD 280


>gi|312622080|ref|YP_004023693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202547|gb|ADQ45874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 360

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 66/198 (33%), Gaps = 37/198 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETA------K 67
              +LVA+SGG DS      L         +     + +      D  +RE +       
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETE----DELIREKSCCSLTAV 57

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           D+ R V+ +   L I + V + K+   +                       R+ ++ L  
Sbjct: 58  DDARRVAHI---LDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  +    I T H    + +    R   +R  A +      + +     L+  +  P 
Sbjct: 115 KKAMVLGMDYIATGHYAIIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLF-PL 173

Query: 170 LRCRREDIRSFLLQRNIS 187
            R  ++++R    + N+ 
Sbjct: 174 GRFSKDEVRKLAEKFNLP 191


>gi|307705158|ref|ZP_07642033.1| GMP synthase [Streptococcus mitis SK597]
 gi|307621297|gb|EFO00359.1| GMP synthase [Streptococcus mitis SK597]
          Length = 513

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 212 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 265

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 266 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 317

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 318 KDVNFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 371

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 372 VRALGTELGMPDHIVWR 388


>gi|262374642|ref|ZP_06067915.1| GMP synthase domain-containing protein [Acinetobacter junii SH205]
 gi|262310432|gb|EEY91523.1| GMP synthase domain-containing protein [Acinetobacter junii SH205]
          Length = 522

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LRKQIGDEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINAT 120
                   + I   V+     +           P+       RE       E  K     
Sbjct: 272 --QMFAENMGI--RVIRADAEERFLTALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPEDLAFDLVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|198423337|ref|XP_002126319.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) [Ciona
           intestinalis]
          Length = 719

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E+    +++ +  + +LV VSGG DS  L    +  L        +  AI VD+   R+ 
Sbjct: 248 EACIQQIKTTIGKSKVLVLVSGGVDSTVLATLCYKALDA-----TQVVAIHVDNGFMRKN 302

Query: 66  AKDEV 70
              EV
Sbjct: 303 ESQEV 307


>gi|254459256|ref|ZP_05072678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
 gi|207084149|gb|EDZ61439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacterales bacterium GD 1]
          Length = 344

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 26/174 (14%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++V +SGG DS      L     +     +K   +  +       +D +     V   
Sbjct: 3   KKVIVGMSGGIDSSVTAYLLQQEGYEVIGVYMKLHDLIENFH-----EDNIASGKKVARS 57

Query: 80  LRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLIM 123
           L I + ++   +   +                       R  ++  + + AK   A  + 
Sbjct: 58  LGIEYHILDLSSKFKEEVYDYFVGEYLNGNTPNPCVKCNRTIKFGALFDFAKEQGADFLA 117

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T H      E    +++ D  ++   L+ +   +L      +  P  + R+ +I
Sbjct: 118 TGHYAKTDGE-FIYKAEDDTKDQSYFLAQIKQDVLK----HLIFPMNKYRKTEI 166


>gi|196234632|ref|ZP_03133450.1| GMP synthase, large subunit [Chthoniobacter flavus Ellin428]
 gi|196221301|gb|EDY15853.1| GMP synthase, large subunit [Chthoniobacter flavus Ellin428]
          Length = 521

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 65/190 (34%), Gaps = 26/190 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V   H+++ +SGG DS      LH  + D      + + + V++  LR    + V+
Sbjct: 212 VRQQVGDDHVILGLSGGVDSSVAAALLHKAIGD------QLTCVFVNNGLLRSNEAETVQ 265

Query: 72  YVSDVCSRLRIAHSVV--SWKNSKPQTGLMAAAREARY------ALISEHAKTI------ 117
            V        +    V  S +  K   G+    R+ +        +  +  K +      
Sbjct: 266 RV--FGDNFHVKLKYVDASTRFLKKLKGVTDPERKRKIIGNEFVRVFEDATKQLTRGKKS 323

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               +     + D +E+V   +        +        +  ++   +  P  +  ++++
Sbjct: 324 KFKFLAQGTLYPDVIESV---AIGGNPASLIKSHHNVGGLPKNMKFKLVEPLRQLFKDEV 380

Query: 178 RSFLLQRNIS 187
           R    Q  + 
Sbjct: 381 REVGAQLGLP 390


>gi|329938153|ref|ZP_08287604.1| GMP synthase [Streptomyces griseoaurantiacus M045]
 gi|329302642|gb|EGG46532.1| GMP synthase [Streptomyces griseoaurantiacus M045]
          Length = 524

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 26/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R  V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 207 NVIEEQVAAIREQVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 260

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   +  +          R+          +   A 
Sbjct: 261 RKGETEQVEKDFVAATGVQLKVVDAEERFLKALAGVSDPEQKRKIIGREFIRVFEQAQAE 320

Query: 121 LIMTAHTFDDQ---LE-----TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPF 169
           +I       D+   +E     T+Y          G            +  DL   +  P 
Sbjct: 321 IIA------DEGPAVEFLVQGTLYPDVVESGGGTGAANIKSHHNVGGLPEDLEFQLIEPL 374

Query: 170 LRCRREDIRSFLLQRNIS 187
            +  ++++R    +  + 
Sbjct: 375 RKLFKDEVRMVGQELGLP 392


>gi|326386236|ref|ZP_08207860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326209461|gb|EGD60254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 401

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 29/137 (21%)

Query: 15  SLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET--- 65
            L  PA    I+VA+SGG DS  +        ++     ++      DH     R+    
Sbjct: 31  DLPRPAQDCRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLY----DHGAATGRKGACC 86

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA----------------RYAL 109
           A +++R    V  RL  AH V   ++   +  +   A +                 ++  
Sbjct: 87  AGEDIRDARAVADRLGFAHYVFDHESDFREAVVERFADDYLSGRTPIPCIRCNMGPKFTD 146

Query: 110 ISEHAKTINATLIMTAH 126
           +   A+ + A  + T H
Sbjct: 147 LMAMARDLGADCLATGH 163


>gi|304315126|ref|YP_003850273.1| ATP-utilizing enzyme [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588585|gb|ADL58960.1| predicted ATP-utilizing enzyme [Methanothermobacter marburgensis
           str. Marburg]
          Length = 361

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 80/263 (30%), Gaps = 47/263 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V+  +    + V  S G+DS  LL        +        +A +VD          +  
Sbjct: 10  VKDALKGRKVAVGFSCGADSTALLDIAGDSADE-------VAAFTVDTGFMP--PGFIEN 60

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAH 126
            S +   L + H +++    + Q             +   Y+ I   A+      ++   
Sbjct: 61  ASSIAGSLGVEHFIINRPLLENQEFVSNTPERCLVCKNIIYSSILSEARKRGFEAVLDGT 120

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRREDIRSFLLQR 184
           T  D  E                        L +  L I  P L     R D+  +L +R
Sbjct: 121 TASDMFED-------------------RPGTLVNHLLGIETPLLDAGITRSDVLEYLKKR 161

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
           N+ + E   NT     R++        D      ++ +       V       I +    
Sbjct: 162 NLEYSE---NTTCLATRIK--------DQEITPERINRVSYAETLVRGLYGEGIVRVRHE 210

Query: 245 HMRSIIAISQDILNIDSTLLFYL 267
              +II + +    +++  L ++
Sbjct: 211 GDSAIIEVDEPERLLNAANLRHI 233


>gi|225075889|ref|ZP_03719088.1| hypothetical protein NEIFLAOT_00912 [Neisseria flavescens
           NRL30031/H210]
 gi|224952835|gb|EEG34044.1| hypothetical protein NEIFLAOT_00912 [Neisseria flavescens
           NRL30031/H210]
          Length = 322

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 5   IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 58

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 59  N---EGKMVMDMFARNLGVKVIHVDAEGQFIAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 115

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 116 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 172

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 173 DEVRELGVALGLP 185


>gi|159905817|ref|YP_001549479.1| ExsB family protein [Methanococcus maripaludis C6]
 gi|159887310|gb|ABX02247.1| ExsB family protein [Methanococcus maripaludis C6]
          Length = 258

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 16/138 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S +E     ++       ++VA SGG DS         ++S  +    K  A+++D+
Sbjct: 4   MDKSLLEKYN-ALKDFFKNKKVIVAYSGGVDST--------LISKIANDTTKTLAVTIDN 54

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAK 115
                +++ +    +   +  I    +         SK         ++     ++   +
Sbjct: 55  GF--FSENVITNAENRAKKYNIPQKTIKIDYLNEITSKDLKNRCYNCKKRIAEELNVIKE 112

Query: 116 TINATLIMTAHTFDDQLE 133
            +N  +I+    +DD  E
Sbjct: 113 ELNYDIIVDGTIYDDIFE 130


>gi|126729666|ref|ZP_01745479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sagittula stellata E-37]
 gi|126709785|gb|EBA08838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sagittula stellata E-37]
          Length = 379

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 62/218 (28%), Gaps = 52/218 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 16  PSETRVVVAMSGGVDSSVVAAMLKEEGYDVVGVTLQLY----DHG--AALAKKGACCAGI 69

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V   +   H V+ ++N   +  +   A                   ++  + E
Sbjct: 70  DIHDARRVAEDMGFPHYVLDYENIFQEAVIEEFADSYLGGATPVPCIRCNERVKFKDLLE 129

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLN 162
            AK + A  + T H             QR    +G  L    D              +  
Sbjct: 130 TAKDLEADCMATGH-----------YIQRKTGARGPELHSAADAARDQSYFLFSTTPEQL 178

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
            ++  P      +   R    +  ++  + P + D  F
Sbjct: 179 DFLRFPLGHLPSKAATRELAARYGLAVADKPDSQDICF 216


>gi|325127496|gb|EGC50425.1| GMP synthase [Neisseria meningitidis N1568]
          Length = 521

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   ++
Sbjct: 372 DEVRELGVALGLT 384


>gi|261867343|ref|YP_003255265.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412675|gb|ACX82046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 383

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 59/210 (28%), Gaps = 49/210 (23%)

Query: 10  RFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +   + L   A   I+  +SGG DS      L           +K               
Sbjct: 12  KLTAQQLAENATKKIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EED 61

Query: 68  DEVRYV---------SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR--------- 103
           D+  Y            VC +L I    +++                 A R         
Sbjct: 62  DDTDYCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCN 121

Query: 104 -EARY-ALISEHAKTINATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
            E ++ A +   A+ + A  I T H       DD  +   +R   +  ++   L  +  T
Sbjct: 122 KEIKFKAFLEYAAEDLGANYIATGHYVRRRGADDNAQ--LLRGLDNNKDQSYFLYTLSKT 179

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            +         P     +  +R+   +  +
Sbjct: 180 QV----GQSLFPVGNIEKPIVRAIAEELGL 205


>gi|297565299|ref|YP_003684271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Meiothermus silvanus DSM 9946]
 gi|296849748|gb|ADH62763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Meiothermus silvanus DSM 9946]
          Length = 371

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 52/204 (25%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK----FSAISVDHCLRET 65
           LV    +LVA+SGG DS      L +   +      R +   K    F            
Sbjct: 2   LVSKGRVLVAMSGGVDSSVSAALLKAQGYEVIGAMMRFWPDNKKDDCFETCC-----SPD 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--AAREA------------RYAL-- 109
           A  E R V+D+   + +   ++ ++    +  +    A   A            R     
Sbjct: 57  AAYEARRVADI---VGVPFYLLDYREEFQEKIIDPFIAGYAAGETPNPCVNCNTRVKFDS 113

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMR----SQRDYAEK--GMGLSGMCDTILYDLNL 163
           + + A+ +    + T H          +R      R   +K     L G     +  +  
Sbjct: 114 LLKKARMLGCDFVATGH--------YVIREGNALFRGDPKKDQTYFLWGTPKEAIPHMMF 165

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
               P     +  +R+   Q  + 
Sbjct: 166 ----PVGHLEKPQVRAIAEQYGLP 185


>gi|238758422|ref|ZP_04619599.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236]
 gi|238703326|gb|EEP95866.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236]
          Length = 373

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 52/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    L         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q ++
Sbjct: 173 ELEKPEVRRIAEQLDL 188


>gi|284161710|ref|YP_003400333.1| phosphoadenosine phosphosulfate reductase [Archaeoglobus profundus
           DSM 5631]
 gi|284011707|gb|ADB57660.1| phosphoadenosine phosphosulfate reductase [Archaeoglobus profundus
           DSM 5631]
          Length = 396

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 16/101 (15%)

Query: 1   MFLSPIESVRF-FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV- 58
           MFL  +E +   F+R      ++ V  SGG DS+  LI     L D         AI + 
Sbjct: 204 MFLEVMERISIKFIREHAN--NVAVPFSGGKDSLACLILAKKALGD-------VKAIYIK 254

Query: 59  -DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL 98
            ++           Y+  VC RL +   V S K    + G+
Sbjct: 255 TNY----EMPYTEEYIERVCKRLGVDLIVESVKFDVEKYGM 291


>gi|187478068|ref|YP_786092.1| GMP synthase [Bordetella avium 197N]
 gi|123515157|sp|Q2L1U0|GUAA_BORA1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115422654|emb|CAJ49180.1| GMP synthase [glutamine-hydrolyzing] [Bordetella avium 197N]
          Length = 530

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 22/192 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 214 EAVAR-IREQVGNDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN 266

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
              +V         + +    V             + P+       RE      +E  K 
Sbjct: 267 EGLQVM--QTFSENMGVKIIHVDATEQFMGKLAGVADPEAKRKIIGREFVEVFQTEAGKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
             A  +     + D +E+   ++ +  A K          +   LNL +  P     +++
Sbjct: 325 QGAKWLAQGTIYPDVIESAGAKTGKAAAIKS---HHNVGGLPETLNLQLLEPLRELFKDE 381

Query: 177 IRSFLLQRNISW 188
           +R   +   +  
Sbjct: 382 VRELGVALGLPP 393


>gi|53712261|ref|YP_098253.1| GMP synthase [Bacteroides fragilis YCH46]
 gi|60680438|ref|YP_210582.1| GMP synthase [Bacteroides fragilis NCTC 9343]
 gi|253563703|ref|ZP_04841160.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. 3_2_5]
 gi|265762449|ref|ZP_06091017.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_16]
 gi|81316492|sp|Q5LGV6|GUAA_BACFN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81383393|sp|Q64XQ7|GUAA_BACFR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52215126|dbj|BAD47719.1| glutaminne-hydrolyzing GMP synthase [Bacteroides fragilis YCH46]
 gi|60491872|emb|CAH06630.1| putative GMP synthase [glutamine-hydrolyzing] [Bacteroides fragilis
           NCTC 9343]
 gi|251947479|gb|EES87761.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. 3_2_5]
 gi|263255057|gb|EEZ26403.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_16]
 gi|301161971|emb|CBW21515.1| putative GMP synthase [glutamine-hydrolyzing] [Bacteroides fragilis
           638R]
          Length = 507

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 27/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKAQLGDDKVVLGLSGGVDSSVAAVLLNRAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAK 115
           R+     V +  D  C  L +     S K      G+    R+ +        +  E A 
Sbjct: 252 RKNEFKNVMH--DYECLGLNVIGVDASEKFFSELEGVTEPERKRKIIGKGFIDVFDEEAH 309

Query: 116 TI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRC 172
            + +   +     + D +E++        +  G  +        +   +NL +  P    
Sbjct: 310 KLKDVKWLAQGTIYPDCIESL--------SITGTVIKSHHNVGGLPEKMNLKLCEPLRLL 361

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 362 FKDEVRRVGRELGMP 376


>gi|328947275|ref|YP_004364612.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM
           2489]
 gi|328447599|gb|AEB13315.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM
           2489]
          Length = 406

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 24/106 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----------------DH 60
               ++V +SGG DS    + L              + +++                 D 
Sbjct: 16  KGDRVVVGLSGGVDSTMTAMLLKE-------KGCDVTCVTMSLWQEADLNLPDDYKIPDS 68

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR 106
           C      +++      C+   I + VV  K    Q  +    RE R
Sbjct: 69  CYSPKEVEDIEENRKFCAEQGIPYVVVDVKEKYQQEVIEYFKREYR 114


>gi|288936092|ref|YP_003440151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella variicola At-22]
 gi|290510856|ref|ZP_06550226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. 1_1_55]
 gi|288890801|gb|ADC59119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella variicola At-22]
 gi|289777572|gb|EFD85570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella sp. 1_1_55]
          Length = 388

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 26  KKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 75

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 76  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 135

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 136 AEDLGADYIATGHYVRRADVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 191

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    + ++
Sbjct: 192 ELEKPQVRKIAEELDL 207


>gi|251793304|ref|YP_003008032.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534699|gb|ACS97945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 384

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++  +SGG DS      L           +K           E        A  ++  
Sbjct: 25  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMK--------NWEEDDDTDYCTAAADLED 76

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEHAK 115
              VC +L I    +++                 A R          E ++ A +   A+
Sbjct: 77  AQAVCDKLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFKAFLEYAAE 136

Query: 116 TINATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A  I T H       DD       +  R           +       +   +  P  
Sbjct: 137 DLGANYIATGHYVRRRGADDNA-----QLLRGLDTNKDQSYFLYTLSTKQVGQSLF-PVG 190

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R+      +
Sbjct: 191 DIAKPIVRAIAEDLGL 206


>gi|238922133|ref|YP_002935647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium eligens ATCC 27750]
 gi|238873805|gb|ACR73513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium eligens ATCC 27750]
          Length = 355

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 34/134 (25%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------ 72
              ++V +SGG DS      L     D     ++          ++ A +          
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQI--------WQDDATEAAENGCCGIS 53

Query: 73  ----VSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAA-REARYALISE 112
                  V  +L I + V+++KN                        A  R  ++  + +
Sbjct: 54  AVDDARRVAGQLDIPYYVMNFKNEFKCNVIDYFVDEYKKGRTPNPCIACNRYVKWESLLK 113

Query: 113 HAKTINATLIMTAH 126
            +  I A  I T H
Sbjct: 114 RSLEIGADYIATGH 127


>gi|152969695|ref|YP_001334804.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954544|gb|ABR76574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 388

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 26  KKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 75

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 76  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 135

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 136 AEDLGADYIATGHYVRRADVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 191

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    + ++
Sbjct: 192 ELEKPQVRKIAEELDL 207


>gi|206576946|ref|YP_002239233.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae 342]
 gi|229486343|sp|B5XSN3|MNMA_KLEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|206566004|gb|ACI07780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae 342]
          Length = 368

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 116 AEDLGADYIATGHYVRRADVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 171

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    + ++
Sbjct: 172 ELEKPQVRKIAEELDL 187


>gi|205822469|sp|A6T7K3|MNMA_KLEP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 116 AEDLGADYIATGHYVRRADVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 171

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    + ++
Sbjct: 172 ELEKPQVRKIAEELDL 187


>gi|160878422|ref|YP_001557390.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Clostridium phytofermentans ISDg]
 gi|160427088|gb|ABX40651.1| GMP synthase, large subunit [Clostridium phytofermentans ISDg]
          Length = 507

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 25/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S  E     +R  +    +L A+SGG DS    + +   +        + + I VDH  L
Sbjct: 196 SFTEESIQALRDKIGDKKVLCALSGGVDSSVAAVMISKAVGK------QLTCIFVDHGLL 249

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           R+   DEV  +    ++  +    V+ +          + P+T       E    +  E 
Sbjct: 250 RKNEGDEVEQI--FTTQFDVNFVRVNAQQRFYDRLAGVTDPETKRKIIGEEF-IRVFEEE 306

Query: 114 AKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           AK I     +     + D +E+     +    +    + G+ + + +     I  P    
Sbjct: 307 AKKIGTVDFLAQGTIYPDVIESGL--GKSAVIKSHHNVGGLPEHVDFK---EIVEPLRLL 361

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   L+  I 
Sbjct: 362 FKDEVRKAGLELGIP 376


>gi|15891587|ref|NP_357259.1| succinoglycan biosynthesis regulator [Agrobacterium tumefaciens
          str. C58]
 gi|81489986|sp|Q8UAM7|QUEC_AGRT5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|15160023|gb|AAK90044.1| succinoglycan biosynthesis regulator [Agrobacterium tumefaciens
          str. C58]
          Length = 236

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I++  SGG DS+ L    H + ++        + +S D+  R   K E+ + +D   RL 
Sbjct: 4  IVI-CSGGLDSVSLA---HKIAAEHEL----LALVSFDYGQRH--KKELDFAADCAKRLG 53

Query: 82 IAHSVVSW 89
          + H ++  
Sbjct: 54 VPHHLIDI 61


>gi|262043152|ref|ZP_06016290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259039540|gb|EEW40673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 388

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 26  KKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 75

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 76  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 135

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 136 AEDLGADYIATGHYVRRADVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 191

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    + ++
Sbjct: 192 ELEKPQVRKIAEELDL 207


>gi|332361217|gb|EGJ39021.1| GMP synthase [Streptococcus sanguinis SK1056]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|332360642|gb|EGJ38451.1| GMP synthase [Streptococcus sanguinis SK49]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|332360435|gb|EGJ38246.1| GMP synthase [Streptococcus sanguinis SK355]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|328946326|gb|EGG40470.1| GMP synthase [Streptococcus sanguinis SK1087]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|327489576|gb|EGF21368.1| GMP synthase [Streptococcus sanguinis SK1058]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|324994448|gb|EGC26361.1| GMP synthase [Streptococcus sanguinis SK678]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|324992915|gb|EGC24835.1| GMP synthase [Streptococcus sanguinis SK405]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|314996626|ref|ZP_07861655.1| GMP synthase protein [Enterococcus faecium TX0133a01]
 gi|313589222|gb|EFR68067.1| GMP synthase protein [Enterococcus faecium TX0133a01]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 216 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHVLLRKG---EAE 266

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 267 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGEEG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 381 ELGTQLGMPDSIVWR 395


>gi|309386087|gb|ADO66968.1| GMP synthase [Enterococcus faecium]
          Length = 521

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 217 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHVLLRKG---EAE 267

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 268 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGEEG 327

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 328 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 381

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 382 ELGTQLGMPDSIVWR 396


>gi|299143928|ref|ZP_07037008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518413|gb|EFI42152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 355

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 38/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRYVS 74
           +++ +SGG DS      L     D +   +K           E   D       +   V 
Sbjct: 7   VILGMSGGVDSSVCAALLKEQGYDVTAVFMK--------NWDEEDDDGVCTATEDYLDVI 58

Query: 75  DVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEHAKTIN 118
            VCS L I +  V+++                  R          E ++    E A   N
Sbjct: 59  RVCSELGIKYYTVNFEKEYKDRVFSYFLSEYEKGRTPNPDVMCNTEIKFKAFLEFAMKFN 118

Query: 119 ATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           +  I   H   T     +T  +R   +  ++   LS + +  L         P    ++E
Sbjct: 119 SDYIAMGHYARTLKKDGKTYLLRGLDENKDQSYFLSRVPEAALSKT----LFPIGNMKKE 174

Query: 176 DIRSFLLQRNIS 187
            +R    + N++
Sbjct: 175 QVRELAQKYNLA 186


>gi|294621454|ref|ZP_06700624.1| GMP synthase [Enterococcus faecium U0317]
 gi|291598979|gb|EFF30026.1| GMP synthase [Enterococcus faecium U0317]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 206 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHVLLRKG---EAE 256

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 257 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGEEG 316

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 317 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 370

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 371 ELGTQLGMPDSIVWR 385


>gi|258616836|ref|ZP_05714606.1| GMP synthase [Enterococcus faecium DO]
          Length = 451

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 147 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHVLLRKG---EAE 197

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 198 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGEEG 257

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 258 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 311

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 312 ELGTQLGMPDSIVWR 326


>gi|257880522|ref|ZP_05660175.1| GMP synthase [Enterococcus faecium 1,230,933]
 gi|257883529|ref|ZP_05663182.1| GMP synthase [Enterococcus faecium 1,231,502]
 gi|257891928|ref|ZP_05671581.1| GMP synthase [Enterococcus faecium 1,231,410]
 gi|260558205|ref|ZP_05830402.1| GMP synthase [Enterococcus faecium C68]
 gi|261206582|ref|ZP_05921281.1| GMP synthase [Enterococcus faecium TC 6]
 gi|257814750|gb|EEV43508.1| GMP synthase [Enterococcus faecium 1,230,933]
 gi|257819187|gb|EEV46515.1| GMP synthase [Enterococcus faecium 1,231,502]
 gi|257828288|gb|EEV54914.1| GMP synthase [Enterococcus faecium 1,231,410]
 gi|260075787|gb|EEW64092.1| GMP synthase [Enterococcus faecium C68]
 gi|260079199|gb|EEW66891.1| GMP synthase [Enterococcus faecium TC 6]
          Length = 482

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 178 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHVLLRKG---EAE 228

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 229 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGEEG 288

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 289 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 342

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 343 ELGTQLGMPDSIVWR 357


>gi|149908394|ref|ZP_01897057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moritella sp. PE36]
 gi|149808557|gb|EDM68492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moritella sp. PE36]
          Length = 379

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 60/205 (29%), Gaps = 48/205 (23%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRE 64
           ++L     ++V +SGG DS      L           + +       ++ A         
Sbjct: 11  KALNSTKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEDDDNDEYCA--------- 61

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------Y 107
            A +++     VC +L I    +++             A  +  R               
Sbjct: 62  -AAEDLADAQAVCDKLGIELHAINFSAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFK 120

Query: 108 ALISEHAKTINATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
           A +   ++ + A  I   H      T D + E   +R      ++   L  +    +   
Sbjct: 121 AFLQFASEVLAADYIAMGHYVSRRQTADGKFE--MLRGLDSNKDQSYFLYTLDHVQVSRS 178

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI 186
                 P     + ++R    ++ +
Sbjct: 179 ----LFPVGELEKPEVRRIAEEQGL 199


>gi|125717986|ref|YP_001035119.1| GMP synthase [Streptococcus sanguinis SK36]
 gi|125497903|gb|ABN44569.1| GMP synthase [glutamine-hydrolyzing], putative [Streptococcus
           sanguinis SK36]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|72053243|ref|XP_783757.1| PREDICTED: similar to GMPS protein [Strongylocentrotus purpuratus]
 gi|115924043|ref|XP_001183900.1| PREDICTED: similar to GMPS protein [Strongylocentrotus purpuratus]
          Length = 684

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           ++  V    +LV VSGG DS      L   L        +  A+ +D+    R  +    
Sbjct: 220 IQKSVGNNKVLVLVSGGVDSTVCAALLRKALRAD-----QVVALHIDNGFMRRNES---- 270

Query: 71  RYVSDVCSRLRIAHSVVSWKNS 92
           + V +  SRL +   VV+   S
Sbjct: 271 QLVEESLSRLGLKLKVVNASQS 292


>gi|15613170|ref|NP_241473.1| GMP synthase [Bacillus halodurans C-125]
 gi|13627137|sp|Q9KF78|GUAA_BACHD RecName: Full=Putative GMP synthase [glutamine-hydrolyzing];
           AltName: Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|10173221|dbj|BAB04326.1| GMP synthetase [Bacillus halodurans C-125]
          Length = 513

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + +H  + D      + + + +DH  LR+   D V 
Sbjct: 212 IREQVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFIDHGLLRKGEADSVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                     +    +  K+         S P+        E  Y    E +K  +   +
Sbjct: 266 --KTFSEGFNMNVIKIDAKDRFLSKLEGVSDPEQKRKIIGNEFIYVFEEEASKLKDMDFL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R    
Sbjct: 324 AQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMRFELIEPLNTLFKDEVRKLGT 377

Query: 183 QRNIS 187
           +  I 
Sbjct: 378 ELGIP 382


>gi|69247008|ref|ZP_00604209.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Enterococcus
           faecium DO]
 gi|68194993|gb|EAN09459.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Enterococcus
           faecium DO]
          Length = 537

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 62/195 (31%), Gaps = 33/195 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-CLRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+    E  
Sbjct: 233 IREQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHVLLRKG---EAE 283

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---ISEHAKTIN 118
            V   +  +  +    V  K          S P+        E  Y      ++ A    
Sbjct: 284 QVMESLGGKFGLNIIKVDAKERFLSKLAGVSDPEEKRKIIGNEFVYVFDDEATKLAGEEG 343

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 344 VSFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVR 397

Query: 179 SFLLQRN----ISWC 189
               Q      I W 
Sbjct: 398 ELGTQLGMPDSIVWR 412


>gi|309799578|ref|ZP_07693805.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus infantis
           SK1302]
 gi|308116798|gb|EFO54247.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus infantis
           SK1302]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IREKVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 TDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|290969038|ref|ZP_06560573.1| GMP synthase (glutamine-hydrolyzing) [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780994|gb|EFD93587.1| GMP synthase (glutamine-hydrolyzing) [Megasphaera genomosp. type_1
           str. 28L]
          Length = 511

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +++A+SGG DS      +   +        + + I VDH L R+   DEV 
Sbjct: 210 IRRTVGNGKVVLALSGGVDSSVAAALISRAVGK------QLTCIFVDHGLMRKNEGDEVE 263

Query: 72  YV 73
             
Sbjct: 264 RA 265


>gi|296135318|ref|YP_003642560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomonas intermedia K12]
 gi|295795440|gb|ADG30230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomonas intermedia K12]
          Length = 368

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 53/196 (27%), Gaps = 44/196 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   GTVVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNW----------EDDDDSEYCSTRQDW 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHA 114
              + V  R+ I    V++     +          AA R          E ++    +HA
Sbjct: 57  LDAASVADRIGIDIEAVNFAAEYKERVFADFLREYAAGRTPNPDVLCNAEIKFKAFLDHA 116

Query: 115 KTINATLIMTAHTFDDQLETV----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             + A  I T H      ET      +R      ++   L  +    L         P  
Sbjct: 117 MRLGADRIATGHYAR-VRETDHGFELLRGLDASKDQSYFLHRLNQAQLART----LFPVG 171

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R       +
Sbjct: 172 ELNKTEVRKVAEAIGL 187


>gi|225870537|ref|YP_002746484.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus equi subsp.
           equi 4047]
 gi|254800116|sp|C0MAM2|GUAA_STRE4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225699941|emb|CAW93884.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus equi subsp.
           equi 4047]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKNEGD--- 269

Query: 72  YVSDVCSRLR--IAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTIN 118
               V   L      +++    SK    L+A              E  Y    E +K   
Sbjct: 270 ---QVMEMLGGRFGLNIIRVDASKRFLDLLAGVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRNIS 187
           +      + 
Sbjct: 381 ALGTALGMP 389


>gi|195978133|ref|YP_002123377.1| GMP synthase [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974838|gb|ACG62364.1| GMP synthase [glutamine-hydrolyzing] GuaA [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 515

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 214 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKNEGD--- 264

Query: 72  YVSDVCSRLR--IAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTIN 118
               V   L      +++    SK    L+A              E  Y    E +K   
Sbjct: 265 ---QVMEMLGGRFGLNIIRVDASKRFLDLLAGVEDPEKKRKIIGNEFVYVFDDEASKLKG 321

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 322 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 375

Query: 179 SFLLQRNIS 187
           +      + 
Sbjct: 376 ALGTALGMP 384


>gi|254372089|ref|ZP_04987582.1| hypothetical protein FTCG_01230 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569820|gb|EDN35474.1| hypothetical protein FTCG_01230 [Francisella novicida GA99-3549]
          Length = 359

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLM-AAAR----------EARYALISEHAKT 116
              VC  + I    ++     W N      +   A R          E ++     +   
Sbjct: 56  AQAVCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H       T  +        KG+  +      LY L     R    P    
Sbjct: 116 LGGNYIATGH----YARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 171

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 172 EKSKVREIAKENNLVTFDKKDST 194


>gi|116253991|ref|YP_769829.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|110816252|sp|Q1MBE0|QUEC_RHIL3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|115258639|emb|CAK09743.1| putative transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 236

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS+ L    H V +++         +S D+  R   + E+ + +   SRL 
Sbjct: 4   IVV-CSGGLDSVTLA---HKVAAEQQL----IGLVSFDYGQRH--RKELDFAARCASRLS 53

Query: 82  IAHSVVSWKNSKPQTGLMA 100
           + H ++            A
Sbjct: 54  VPHHIIDIAGIGGHLSGSA 72


>gi|260576792|ref|ZP_05844777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sp. SW2]
 gi|259021044|gb|EEW24355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter sp. SW2]
          Length = 379

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 52/221 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 16  PQETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLY----DHG--AALAKKGACCAGR 69

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISE 112
           ++     V   +   H V+ ++N+     +   A                       +  
Sbjct: 70  DIHDARRVAEAMGFPHYVLDYENTFRAAVIDEFADAYLAGATPVPCIRCNERVKFKDLLA 129

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLN 162
            A+ ++A  + T H             QR     G  L    D              +  
Sbjct: 130 TARELDADCMATGH-----------YIQRKLGLHGPELHSATDPARDQSYFLFSTTAEQL 178

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P      + + R+   +  ++  + P + D  F   
Sbjct: 179 DYLRFPLGHLASKAETRALAARYGLAVADKPDSQDICFVPN 219


>gi|258515487|ref|YP_003191709.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779192|gb|ACV63086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 362

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 47/142 (33%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDR-----------------SFGKIKFSAISVDH 60
               ++VA+SGG DS      L     +                    G    SA+    
Sbjct: 2   KGKKVVVAMSGGVDSSVTAALLLEEGYEITGVTMQIWDPEQKDATGEEGCCSLSAV---- 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-RE 104
                  D+ R V+++   L I + V++++    ++                   A  R 
Sbjct: 58  -------DDARRVANI---LNIPYYVLNFRKQFEKSVIDYFLAEYLEGRTPNPCIACNRY 107

Query: 105 ARYALISEHAKTINATLIMTAH 126
            ++  + + A +I A  I T H
Sbjct: 108 VKFTALLQKAISIGADFIATGH 129


>gi|325299223|ref|YP_004259140.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
 gi|324318776|gb|ADY36667.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM
           18170]
          Length = 379

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 60/205 (29%), Gaps = 54/205 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR------------ 63
           +     +LV +SGG DS    I L            +   ++    +R            
Sbjct: 1   MTKDKRVLVGMSGGIDSSATCIMLQE-------QGYEVVGVT----MRTWDIPSHFSTPG 49

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAARE----------ARY 107
           +   DE+     V +RL I H V   +    +  +          R            + 
Sbjct: 50  QEQPDEILEAQAVAARLGIEHHVADVREEFRKVIVQYFIDEYMRGRTPNPCVLCNPLFKE 109

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLW 164
            ++ E A       I T H    Q+E      +R+       G   +      L+ L   
Sbjct: 110 RILCEWADRTGCQWIATGHYC--QIE------KRNGWFYIVTGDDATKDQSYFLWKLPQE 161

Query: 165 ISR----PFLRCRREDIRSFLLQRN 185
           I      P     ++ +R +L  + 
Sbjct: 162 ILSRMLFPLGGMTKDKVREYLAHKG 186


>gi|270264715|ref|ZP_06192980.1| GMP synthase, glutamine-hydrolyzing [Serratia odorifera 4Rx13]
 gi|270041398|gb|EFA14497.1| GMP synthase, glutamine-hydrolyzing [Serratia odorifera 4Rx13]
          Length = 546

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 233 TIIEDAVERIREQVGEDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 286

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +           +    V+ +N          +P+       R        E
Sbjct: 287 RLNEADQVLEM---FGDHFGLNIVHVAAENRFLDALAGVDEPEAKRKIIGRVFVEVFDEE 343

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 344 ACKQDEVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 400

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 401 FKDEVRKIGLELGLPY 416


>gi|238758844|ref|ZP_04620017.1| GMP synthase [glutamine-hydrolyzing] [Yersinia aldovae ATCC 35236]
 gi|238702952|gb|EEP95496.1| GMP synthase [glutamine-hydrolyzing] [Yersinia aldovae ATCC 35236]
          Length = 525

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +   H+++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAIVRLREQIGEDHVILGLSGGVDSSVTAMLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +        +  +    V+ ++          +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDKFGLNIVHVAAEDRFLSALAGVDEPEAKRKIIGRVFVELFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQDLVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|298490690|ref|YP_003720867.1| GMP synthase large subunit ['Nostoc azollae' 0708]
 gi|298232608|gb|ADI63744.1| GMP synthase, large subunit ['Nostoc azollae' 0708]
          Length = 540

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 28/197 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC----L 62
           ES+R  +R+ V    +L+A+SGG DS  L   L+  + +      + + + +D      L
Sbjct: 225 ESIRE-IRARVGEKRVLLALSGGVDSSTLAFLLYKAIGE------QLTCVFIDQGFMRKL 277

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-----GLMAAAREARYAL---ISEHA 114
                   R +     +  I    V+ ++   +            R   +       E +
Sbjct: 278 EPE-----RLLKLFQEQFHIPVEYVNARDRFIKAIADIIDPEEKRRRIGHEFIRVFEETS 332

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFL 170
           K +     +     + D +E+          E+             +  DL   +  P  
Sbjct: 333 KKLGHFDYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSHHNVGGLPKDLRFKLVEPLR 392

Query: 171 RCRREDIRSFLLQRNIS 187
           +  ++++R       + 
Sbjct: 393 KLFKDEVRKVGRSIGLP 409


>gi|213052788|ref|ZP_03345666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
          Length = 374

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 48/196 (24%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 12  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 61

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 62  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 121

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 122 AEDLGADYIATGHYVRRADVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQS----LFPVG 177

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R       +
Sbjct: 178 ELEKPQVRKIAEDLGL 193


>gi|325302866|tpg|DAA34469.1| TPA_exp: GMP synthase [Amblyomma variegatum]
          Length = 293

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R  V  + +L+ VSGG DS      LH  L +      +  A+ +D+   R   KDE 
Sbjct: 47  YIRRTVGQSKVLMLVSGGVDSTVCAALLHKALRED-----QVIALHIDNGFMR---KDES 98

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V      L +   VV 
Sbjct: 99  AQVEQSLKHLGLRLRVVD 116


>gi|302392703|ref|YP_003828523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetohalobium arabaticum DSM 5501]
 gi|302204780|gb|ADL13458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acetohalobium arabaticum DSM 5501]
          Length = 361

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 66/221 (29%), Gaps = 55/221 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVDHCLR 63
            ++VA+SGG DS      L                      D   G    SA+       
Sbjct: 8   RVVVAMSGGVDSSLAAAILKKEGYEVIGITMKIWPSEETPVDNENGCCSLSAV------- 60

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAARE----------ARY 107
               ++ R V     +L I   V+++++   +T +       A AR            ++
Sbjct: 61  ----NDARRV---AYKLDIPFYVINFEDLFKRTVIQNFKNEYAQARTPNPCVVCNKVIKF 113

Query: 108 ALISEHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
                 AK + A  + T H     Q E      ++  A        + +     L   I 
Sbjct: 114 NAFLNKAKELGAYYMATGHYAKIIQNEDGRYLLKKSAAPDKDQTYMLYNLTQEQLKHTIF 173

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFER 201
            P     ++  R      ++   + P +       DD + R
Sbjct: 174 -PLAEYTKQQTRELAKDYDLKVYDKPESQEICFIPDDDYRR 213


>gi|238791830|ref|ZP_04635467.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909]
 gi|238728934|gb|EEQ20451.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909]
          Length = 373

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 51/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    L         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q  +
Sbjct: 173 ELEKPEVRRIAEQLEL 188


>gi|94310405|ref|YP_583615.1| GMP synthase [Cupriavidus metallidurans CH34]
 gi|123383866|sp|Q1LND0|GUAA_RALME RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|93354257|gb|ABF08346.1| GMP synthetase (glutamine aminotransferase) [Cupriavidus
           metallidurans CH34]
          Length = 539

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 23/198 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I      +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIAEAVEKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  -LRETAKDEVRYVSD-VCSRLR--IAHSVVSWK-------NSKPQTGLMAAAREARYALI 110
            LR    DE + V D    RL   + H   S +        + P+       RE      
Sbjct: 259 LLR---LDEGKMVMDMFAGRLHAKVVHIDASEQFLGHLTGVTDPEQKRKIIGREFVEVFQ 315

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +E  K  NA  +     + D +E+      +      +        +   L L +  P  
Sbjct: 316 AEAKKLSNAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEPLR 372

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R   +   +  
Sbjct: 373 DLFKDEVRELGVALGLPP 390


>gi|332074768|gb|EGI85242.1| GMP synthase [Streptococcus pneumoniae GA17545]
          Length = 520

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   +       ++   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAI------GVQLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|327398195|ref|YP_004339064.1| GMP synthase [Hippea maritima DSM 10411]
 gi|327180824|gb|AEA33005.1| GMP synthase (glutamine-hydrolyzing) [Hippea maritima DSM 10411]
          Length = 506

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 73/186 (39%), Gaps = 25/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++ AVSGG DS  + + ++  + DR      F  + V+   LR+    E  
Sbjct: 204 IKQTVKDKRVIGAVSGGVDSSVVAVLMNKAIGDR------FVGVFVNTGLLRKN---EPE 254

Query: 72  YVSDVCSRL--RIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKTI-NATL 121
           YV ++  +L   I +   S    +   G+     + R         + ++ AK   NA  
Sbjct: 255 YVLNLFKKLNVNIRYEDASELFLERLKGIEDP-EKKRKIIGHTFIDVFAKIAKEYNNAEF 313

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V ++      +    + G+      DLN  +  P     ++++R   
Sbjct: 314 LAQGTLYPDIIESVSVKGPSATIKSHHNVGGL----PKDLNFKLIEPLRELFKDEVRQLG 369

Query: 182 LQRNIS 187
            Q  I 
Sbjct: 370 RQLGID 375


>gi|312127260|ref|YP_003992134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777279|gb|ADQ06765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 360

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 49/204 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------- 65
              +LVA+SGG DS      L     +     ++          +               
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQI--------WQSGCGEELITGKSCCS 53

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARY 107
             A D+ R V+++   L I + V + K+   +                       R+ ++
Sbjct: 54  LYAVDDARRVANI---LDIPYYVFNMKDDFKKMVIDYFVDEYIKGRTPNPCIMCNRKIKF 110

Query: 108 ALISEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
               + A TI    I T H      D+ L    ++  +   +    +       +    L
Sbjct: 111 EFFLKKAITIGMDYIATGHYAIVEYDNSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTL 170

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
           +   P  R  ++++R    +  + 
Sbjct: 171 F---PLGRFSKDEVRRLAEKFKLP 191


>gi|303327985|ref|ZP_07358424.1| GMP synthase [Desulfovibrio sp. 3_1_syn3]
 gi|302861811|gb|EFL84746.1| GMP synthase [Desulfovibrio sp. 3_1_syn3]
          Length = 514

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 40/208 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61
           S +E V   +   V   H++ A+SGG DS  + + LH  +  R         I VD+   
Sbjct: 202 SFVERVVKEMAEQVGDRHVVCALSGGIDSTVVAVLLHRAIGKR------LHCIFVDNGLL 255

Query: 62  -----------LRETAKDEVRYVSD---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY 107
                      LRE     + +V       SRL+        +     T +         
Sbjct: 256 RLNEGEEVVNYLREHFDLNLDFVQAQELFLSRLKGVEDPEKKRKIIGHTFIE-------- 307

Query: 108 ALISEHAKTI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            +  E AK +     +     + D +E+V  +      +    + G+ DT    + L + 
Sbjct: 308 -IFDEEAKKLPQVDFLAQGTLYPDVIESVSHKGPSAVIKSHHNVGGLPDT----MKLKLI 362

Query: 167 RPFLRCRREDIRSFLLQRN----ISWCE 190
            P     ++++R    +      I W  
Sbjct: 363 EPLRELFKDEVRKVAAELGMPDSIVWRH 390


>gi|254512926|ref|ZP_05124992.1| exsB protein [Rhodobacteraceae bacterium KLH11]
 gi|221532925|gb|EEE35920.1| exsB protein [Rhodobacteraceae bacterium KLH11]
          Length = 232

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L   L       + G +    +S D+  R T   E+ + +   +RL + H 
Sbjct: 7  CSGGLDSVSLAHVLA------NQGDLS-RLVSFDYGQRHT--KELDFAAACATRLGVPHH 57

Query: 86 VVSWK 90
          V+  +
Sbjct: 58 VIDLR 62


>gi|304394517|ref|ZP_07376438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ahrensia sp. R2A130]
 gi|303293427|gb|EFL87806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ahrensia sp. R2A130]
          Length = 406

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 26/136 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRET----A 66
                    ++VA+SGG DS  +   L     +     ++      DH   +++     A
Sbjct: 8   FDKAPADTRVVVAMSGGVDSSVVACLLKEQGYEVLGMTLQLY----DHGAAVQKKGACCA 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALI 110
             ++     V  ++   H V+ ++    +  +   A+                  +++ +
Sbjct: 64  GQDIHDARRVSEQMGFPHYVLDYEQKFREQVIDPFAKAYINGETPIPCVACNQTVKFSDL 123

Query: 111 SEHAKTINATLIMTAH 126
              A+ + A  + T H
Sbjct: 124 LTTARELGADCLATGH 139


>gi|282164942|ref|YP_003357327.1| hypothetical protein MCP_2272 [Methanocella paludicola SANAE]
 gi|282157256|dbj|BAI62344.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 272

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 36/183 (19%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VDHCLRETAKDEVRY 72
           R L     +LVA SGG DS  LL          + G  K +A + V   L     D    
Sbjct: 15  RILTEMGSVLVAFSGGVDSSFLLKCAVD-----TLGTQKVAAATAVSEILSPEDFD---L 66

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGL------MAAAREARYALISEHAKTINATLIMTAH 126
              +   L + H +V+    +    +          ++ R++ + E  + ++   I    
Sbjct: 67  AESIAKDLGVRHVIVTSSEMENAEFIANTPERCYVCKKGRFSKLIEEKEKLSLAYIADGS 126

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQR 184
             DD+ +                             L I  P    +  + +IR    + 
Sbjct: 127 NRDDEAD-------------------YRPGERAMKELGIRSPLREAQLYKSEIRELSREM 167

Query: 185 NIS 187
            + 
Sbjct: 168 GLP 170


>gi|262306097|gb|ACY45641.1| gln amidotransferase [Pedetontus saltator]
          Length = 198

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 15/87 (17%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD------HCLRET 65
           ++R  V  + +L+ VSGG DS      LH  L +      +  A+ +D      H     
Sbjct: 36  YIRETVGNSKVLLLVSGGVDSTVCGALLHKALPED-----QVIAVHIDNGYMRKH----E 86

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS 92
           ++   + ++ V  RLR+ H+  ++ N+
Sbjct: 87  SQKVEQSLAKVGLRLRVIHAAHTFSNA 113


>gi|260892132|ref|YP_003238229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ammonifex degensii KC4]
 gi|260864273|gb|ACX51379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ammonifex degensii KC4]
          Length = 344

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 55/190 (28%), Gaps = 35/190 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA+SGG DS      L  + +      +                +E    ++V ++L
Sbjct: 3   RVAVALSGGVDSATAAFLL--LQAGYEVFGVTMLV----------TGEEGEKAAEVAAKL 50

Query: 81  RIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLIMT 124
           +I H V   +    Q                       R+ ++ L+ E A  + A  + T
Sbjct: 51  KIPHFVFDLRQEFAQEVIKPFVEAYLAGLTPNPCVWCNRKLKFGLLLEKALKLGADFLAT 110

Query: 125 AHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            H      D   E       R    +      +  ++       +  P     + +    
Sbjct: 111 GHYARVWFDPARERYL--LARGKDRRKDQSYFLY-SLNQQQLARVLFPLGGRTKAENLLL 167

Query: 181 LLQRNISWCE 190
           + +  +   E
Sbjct: 168 VKKLGLPLRE 177


>gi|170289837|ref|YP_001736653.1| hypothetical protein Kcr_0210 [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173917|gb|ACB06970.1| conserved hypothetical protein [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 291

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
            + +L  +SGG DS+    A+HS    +     +  A+ +D      + + +R  +++  
Sbjct: 44  GSSLLFGISGGKDSIA---AIHSTDLLKEKYGFRIGAVMID----TGSDECLRVFNELKD 96

Query: 79  RLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            L     V+S ++        P+          RY L++ +A       + T H  DD  
Sbjct: 97  MLGFEGEVLSLRDWGIEIPRDPKLACFVCGVVNRY-LLNRYAVERGYDYVATGHNLDDMA 155

Query: 133 ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                   +   +  +     + + +         +P       D  S++  + + 
Sbjct: 156 YFGLNNLIKHSLDYLLYQYDSVTEPVPELRMAGKVKPLFWLSDSDSLSYVKLKGLP 211


>gi|149203606|ref|ZP_01880575.1| hypothetical protein RTM1035_06058 [Roseovarius sp. TM1035]
 gi|149142723|gb|EDM30765.1| hypothetical protein RTM1035_06058 [Roseovarius sp. TM1035]
          Length = 232

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I++  SGG DS+ L    H V ++     +    +S D+  R     EV Y +    RL 
Sbjct: 4  IVI-CSGGLDSVSLA---HKVAAEHELAGL----LSFDYGQRHV--KEVEYAAACARRLG 53

Query: 82 IAHSVVSWKN 91
          + H VV  + 
Sbjct: 54 VPHKVVDIRQ 63


>gi|113474718|ref|YP_720779.1| GMP synthase [Trichodesmium erythraeum IMS101]
 gi|110165766|gb|ABG50306.1| GMP synthase (glutamine-hydrolyzing) [Trichodesmium erythraeum
           IMS101]
          Length = 575

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  +R+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 260 EAIRE-IRAKVGDKRVLLALSGGVDSSTLAFLLHQAIGDK 298


>gi|257469696|ref|ZP_05633788.1| PP-loop domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317063928|ref|ZP_07928413.1| asparagine synthase [Fusobacterium ulcerans ATCC 49185]
 gi|313689604|gb|EFS26439.1| asparagine synthase [Fusobacterium ulcerans ATCC 49185]
          Length = 277

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 42/186 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD---HCLRE-TAKDEVRYVSDV 76
           +++VA SGG DS    + L +   +      K  A+++    H + E  +  E       
Sbjct: 22  NVVVAFSGGVDSS---LLLKTACINAVKNGTKVFAVTMHTTLHTMNEIESSKE------T 72

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATLIMTAHTFD 129
              +   H ++S    K + G+           ++  +  + + A+++   +I+     D
Sbjct: 73  AGEVGAEHLIISVDELK-EAGIENNPVERCYLCKKYLFQKMKDKAESLGVKIILDGTNED 131

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNIS 187
           D      +   R       GL  + +       L I  P       + D+R    +  +S
Sbjct: 132 D------LHMFRP------GLKALKE-------LEIKSPLAESDFSKTDVRKLAEEYGLS 172

Query: 188 WCEDPS 193
             + PS
Sbjct: 173 VSKKPS 178


>gi|222099125|ref|YP_002533693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga neapolitana DSM 4359]
 gi|254811469|sp|B9KBD1|MNMA_THENN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221571515|gb|ACM22327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga neapolitana DSM 4359]
          Length = 358

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 57/201 (28%), Gaps = 48/201 (23%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFG------------KIKFSAISVDHCLRETAK 67
            + VA+SGG DS + L + L      ++F             +IK            +  
Sbjct: 2   KVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCC-----SPSDT 56

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RY---ALIS 111
            +      +   L +   +V  +    +  +    R+              RY       
Sbjct: 57  ADA---IRIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFM 113

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---- 167
           ++  +       + H    ++E      +        G+ G  D   +   +   R    
Sbjct: 114 DYVLSQGFDAFASGHYA--RVE---FSGKYGKKVIKKGVDGKKDQSYFLARIEPWRIEKL 168

Query: 168 --PFLRCRREDIRSFLLQRNI 186
             P     +E+IR    +  I
Sbjct: 169 LFPNGIYTKEEIRRIAEEAGI 189


>gi|170288218|ref|YP_001738456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga sp. RQ2]
 gi|205828981|sp|B1L8X5|MNMA_THESQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170175721|gb|ACB08773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga sp. RQ2]
          Length = 358

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 57/201 (28%), Gaps = 48/201 (23%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFG------------KIKFSAISVDHCLRETAK 67
            + VA+SGG DS + L + L      ++F             +IK            +  
Sbjct: 2   KVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCC-----SPSDT 56

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RY---ALIS 111
            +      +   L +   +V  +    +  +    R+              RY       
Sbjct: 57  ADA---IRIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFM 113

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---- 167
           ++  +       + H    ++E      +        G+ G  D   +   +   R    
Sbjct: 114 DYVLSQGFDAFASGHYA--RVE---FSGKYGKKVIKKGVDGKKDQSYFLARIEPWRIEKL 168

Query: 168 --PFLRCRREDIRSFLLQRNI 186
             P     +E+IR    +  I
Sbjct: 169 LFPNGIYTKEEIRRIAEEAGI 189


>gi|297158199|gb|ADI07911.1| GMP synthase [Streptomyces bingchenggensis BCW-1]
          Length = 528

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 68/200 (34%), Gaps = 27/200 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E     +R  V     +  +SGG DS     A+ + L  R+ G  + + + VDH L 
Sbjct: 208 NVVEEAVAAIREQVGTKRAICGLSGGVDS-----AVAAALVQRAIGD-QLTCVYVDHGLM 261

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   +  +          R+          +   A 
Sbjct: 262 RKGESEQVEKDFVAATGVQLKVVDAEERFLTALAGVSDPEEKRKIIGREFIRVFEQAQAE 321

Query: 121 L-------------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           L             ++    + D +E+             +        +  DL   +  
Sbjct: 322 LVAEAGAAGEAVEFLVQGTLYPDVVES-----GGGTGAANIKSHHNVGGLPDDLEFQLIE 376

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P  R  ++++R    +  + 
Sbjct: 377 PLRRLFKDEVRMVGQELGLP 396


>gi|226950720|ref|YP_002805811.1| GMP synthase [Clostridium botulinum A2 str. Kyoto]
 gi|254800092|sp|C1FLV2|GUAA_CLOBJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226844589|gb|ACO87255.1| GMP synthase [Clostridium botulinum A2 str. Kyoto]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            ++  V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V
Sbjct: 208 AIKEKVGDKKVICALSGGVDSSVAAVIVHKAIGK------QLTCIFVDHGLLRKDEGDQV 261

Query: 71  RYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATL 121
             +     +  +    V+ ++       G+    R+ +        +  E AK +   + 
Sbjct: 262 EKIFK--DQFDMNLIRVNAQDRFLGKLKGVSDPERKRKIIGEEFIRVFEEEAKKLGNISF 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R+  
Sbjct: 320 LVQGTIYPDIVE------SGTNTSATIKSHHNVGGLPEDMEFKLIEPLRELFKDEVRAVG 373

Query: 182 LQRNISW 188
            +  I  
Sbjct: 374 EELGIPH 380


>gi|187776788|ref|ZP_02993261.1| hypothetical protein CLOSPO_00304 [Clostridium sporogenes ATCC
           15579]
 gi|187775447|gb|EDU39249.1| hypothetical protein CLOSPO_00304 [Clostridium sporogenes ATCC
           15579]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            ++  V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V
Sbjct: 208 AIKEKVGDKKVICALSGGVDSSVAAVIVHKAIGK------QLTCIFVDHGLLRKDEGDQV 261

Query: 71  RYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATL 121
             +     +  +    V+ ++       G+    R+ +        +  E AK +   + 
Sbjct: 262 EKIFK--DQFDMNLIRVNAQDRFLGKLKGVSDPERKRKIIGEEFIRVFEEEAKKLGDISF 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R+  
Sbjct: 320 LVQGTIYPDIVE------SGTNTSATIKSHHNVGGLPEDMEFKLIEPLRELFKDEVRAVG 373

Query: 182 LQRNISW 188
            +  I  
Sbjct: 374 EELGIPH 380


>gi|168179058|ref|ZP_02613722.1| GMP synthase [Clostridium botulinum NCTC 2916]
 gi|182670215|gb|EDT82191.1| GMP synthase [Clostridium botulinum NCTC 2916]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            ++  V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V
Sbjct: 208 AIKEKVGDKKVICALSGGVDSSVAAVIVHKAIGK------QLTCIFVDHGLLRKDEGDQV 261

Query: 71  RYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATL 121
             +     +  +    V+ ++       G+    R+ +        +  E AK +   + 
Sbjct: 262 EKIFK--DQFDMNLIRVNAQDRFLGKLKGVSDPERKRKIIGEEFIRVFEEEAKKLGDISF 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R+  
Sbjct: 320 LVQGTIYPDIVE------SGTNTSATIKSHHNVGGLPEDMEFKLIEPLRELFKDEVRAVG 373

Query: 182 LQRNISW 188
            +  I  
Sbjct: 374 EELGIPH 380


>gi|153940088|ref|YP_001392640.1| GMP synthase [Clostridium botulinum F str. Langeland]
 gi|170756813|ref|YP_001782918.1| GMP synthase [Clostridium botulinum B1 str. Okra]
 gi|226738423|sp|B1IFD1|GUAA_CLOBK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738424|sp|A7GIN0|GUAA_CLOBL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|152935984|gb|ABS41482.1| GMP synthase [Clostridium botulinum F str. Langeland]
 gi|169122025|gb|ACA45861.1| GMP synthase [Clostridium botulinum B1 str. Okra]
 gi|295320625|gb|ADG01003.1| GMP synthase [Clostridium botulinum F str. 230613]
 gi|322807605|emb|CBZ05180.1| gmp synthase [glutamine-hydrolyzing] [Clostridium botulinum H04402
           065]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            ++  V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V
Sbjct: 208 AIKEKVGDKKVICALSGGVDSSVAAVIVHKAIGK------QLTCIFVDHGLLRKDEGDQV 261

Query: 71  RYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATL 121
             +     +  +    V+ ++       G+    R+ +        +  E AK +   + 
Sbjct: 262 EKIFK--DQFDMNLIRVNAQDRFLGKLKGVSDPERKRKIIGEEFIRVFEEEAKKLGDISF 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R+  
Sbjct: 320 LVQGTIYPDIVE------SGTNTSATIKSHHNVGGLPEDMEFKLIEPLRELFKDEVRAVG 373

Query: 182 LQRNISW 188
            +  I  
Sbjct: 374 EELGIPH 380


>gi|330506762|ref|YP_004383190.1| ExsB protein [Methanosaeta concilii GP-6]
 gi|328927570|gb|AEB67372.1| ExsB protein [Methanosaeta concilii GP-6]
          Length = 220

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 38/190 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS  LL  L +             A++ ++   +  K E+     + SRL 
Sbjct: 4   VLI-LSGGLDSTTLLYKLLA-------DGYLVDALTFNYG--QKHKKEIDCAIAITSRLD 53

Query: 82  IAHSVVSWKNSKPQTGL---------------MAAAREA----R----YALISEHAKTIN 118
           + H ++         G                  AAR+     R     ++ + +A+   
Sbjct: 54  VPHQIIDLSTLAAFLGESALLGKKEVPSCHYTEEAARQTVVPNRNMIMLSVAAGYAEAHE 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T +  A   +DQ         R    + +  +    T      + +  PF+   + DI 
Sbjct: 114 ITELFYAAHKNDQT---IYPDCRPEFVEALKPAIRLGTAW--NPVELQAPFVHMTKADIV 168

Query: 179 SFLLQRNISW 188
              L+  + +
Sbjct: 169 RMGLKLQVPY 178


>gi|289450239|ref|YP_003475271.1| hypothetical protein HMPREF0868_0965 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184786|gb|ADC91211.1| TIGR00268 family protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 417

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 56/182 (30%), Gaps = 36/182 (19%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVRYV 73
           +L     + VA SGG DS  LL     VL  ++   I          +     + E++  
Sbjct: 155 ALPKDGKLAVAFSGGVDSSLLLYVADRVLGGQNATGIL--------GISPFTPRREIQAA 206

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---GLMAAAR---EARYALISEHAKTINATLIMTAHT 127
             +     +A S  S+ +++ +T             +  ++   + A       +     
Sbjct: 207 LSMSKSYGLALSTASFSDTEMRTLYPNPEDRCYHCKKMLFSNFIDFAVKHGFPYLAEGSN 266

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRN 185
            DD              +   GL  + +       L +  P    +  ++ IRS      
Sbjct: 267 LDD------------MGDYRPGLKAIAE-------LHVLSPLRVAQFDKKKIRSLSAALG 307

Query: 186 IS 187
           + 
Sbjct: 308 LP 309


>gi|300361472|ref|ZP_07057649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri JV-V03]
 gi|300354091|gb|EFJ69962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri JV-V03]
          Length = 383

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 40/218 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 16  RVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 68

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V   + I +  ++++    +             R          E ++    + A  ++
Sbjct: 69  KVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLD 128

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D+      MR +    ++   LS +      D    +  P     +
Sbjct: 129 ADYIAMGHYAATKVDENGIVHMMRPKDGNKDQTYFLSQLSQ----DQLKKVIFPLANLTK 184

Query: 175 EDIRSFLLQRNISWC--EDPSNTDDRFERVRVRRFVRD 210
             +R   +   ++    +D +      ER   R+F+ +
Sbjct: 185 PQVREIAIAAGLATAKKKDSTGICFIGERNF-RKFLSE 221


>gi|187931657|ref|YP_001891641.1| GMP synthase [Francisella tularensis subsp. mediasiatica FSC147]
 gi|226739622|sp|B2SGK4|GUAA_FRATM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187712566|gb|ACD30863.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 516

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 212 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEDDQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 266 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|183599368|ref|ZP_02960861.1| hypothetical protein PROSTU_02837 [Providencia stuartii ATCC 25827]
 gi|188021606|gb|EDU59646.1| hypothetical protein PROSTU_02837 [Providencia stuartii ATCC 25827]
          Length = 525

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 68/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           ++  +   H+++A+SGG DS    + L+  +  R       + + VD+  LR   A   +
Sbjct: 221 LKEQIGDDHVILALSGGVDSSVTALLLNRAIGKR------LTCVFVDNGLLRLNEADQVM 274

Query: 71  R-YVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREARYALI-----SEHAKTINATLI 122
             +       L I H     +      G+    A R+A   +       E +K      +
Sbjct: 275 EMFAGKF--DLNIIHVKAEDRFLSALAGIHDPEAKRKAIGHVFIDVFDEEASKQTQVKWL 332

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+    + + +  K          +  D+ L +  P     ++++R   L
Sbjct: 333 AQGTIYPDIIESAASATGKAHVIKS---HHNVGGLPEDMKLGLVEPLKELFKDEVRKIGL 389

Query: 183 QRNISW 188
           +  + +
Sbjct: 390 ELGLPY 395


>gi|156365939|ref|XP_001626899.1| predicted protein [Nematostella vectensis]
 gi|156213792|gb|EDO34799.1| predicted protein [Nematostella vectensis]
          Length = 701

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +LV VSGG DS      LH  L     G  +  A+ +D+   R   K E  
Sbjct: 238 IRHTVGNHKVLVLVSGGVDSTVCAALLHKAL-----GPDRVVAVHIDNGFMR---KQESM 289

Query: 72  YVSDVCSRLRIAHSVVS 88
            V +    L +   V++
Sbjct: 290 QVEESLKCLGLRLKVLN 306


>gi|138894533|ref|YP_001124986.1| aluminum resistance protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266046|gb|ABO66241.1| Aluminum resistance protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 223

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 57/199 (28%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS   L       ++         A++ D+  R   + E+   + +   L 
Sbjct: 9   VVV-FSGGQDSTTCLFWAKKQFAE-------VEAVTFDYGQRH--RREIEVAASIADELG 58

Query: 82  IAHSVVSW---------KNSKPQTGLMAA----------AREARY-ALISEHAKTINATL 121
           + H+V+             ++ +  +              R   + +  +  AK   A  
Sbjct: 59  VRHTVLDMSLLGQLAPNALTRGEIAIEQKEGELPTTFVDGRNLLFLSFAAVLAKQRGARH 118

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLR 171
           I+T        ET              G     D  +  LN+           I  P + 
Sbjct: 119 IVTG-----VCET-----------DFSGYPDCRDIFIKSLNVTLNLAMDYPFVIHTPLMW 162

Query: 172 CRREDIRSFLLQRN-ISWC 189
             + +      +   + + 
Sbjct: 163 LTKAETWKLADELGALEFV 181


>gi|50083437|ref|YP_044947.1| GMP synthase [Acinetobacter sp. ADP1]
 gi|81393985|sp|Q6FFN2|GUAA_ACIAD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49529413|emb|CAG67125.1| GMP synthetase (glutamine aminotransferase) [Acinetobacter sp.
           ADP1]
          Length = 550

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 246 LRAQIGDEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 299

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINAT 120
                   + I   V+     +           P+       RE       E  K     
Sbjct: 300 --QMFADNMGI--RVIRADAEERFLTALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVK 355

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 356 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLEFELVEPLRDLFKDEVRKL 412

Query: 181 LLQRNISW 188
                +  
Sbjct: 413 GTTLGLPH 420


>gi|291550046|emb|CBL26308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus torques L2-14]
          Length = 358

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 59/198 (29%), Gaps = 38/198 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRET 65
               ++V +SGG DS      L                 + +  + +         L   
Sbjct: 2   SKGKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENEVQEENGGCC---GLS-- 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYAL 109
           A D+ R V    S + I + V+++K    +                    A  R  ++  
Sbjct: 57  AVDDARRV---ASSIGIPYYVMNFKQEFQKNVIDYFTKEYLNGRTPNPCIACNRYVKWEA 113

Query: 110 ISEHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           + + + +I A  I T H    D+L       +R           + + +  +       P
Sbjct: 114 LLQRSLSIGADYIATGHYARIDKLSNGRYAIRRSATLAKDQTYALYN-LTQEQLEHTLMP 172

Query: 169 FLRCRREDIRSFLLQRNI 186
                ++ IR    +  +
Sbjct: 173 VGNYSKDQIREMAEKIGL 190


>gi|283781959|ref|YP_003372714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Pirellula staleyi DSM 6068]
 gi|283440412|gb|ADB18854.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Pirellula staleyi DSM 6068]
          Length = 373

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 47/211 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISV--------------DH 60
           + I++A+SGG DS      L     +        G+   +A +V              DH
Sbjct: 2   SRIVLAMSGGVDSSVAAAILTRAGHEVIGVFMRHGEEAQAACAVDAPGFQLPIFKERSDH 61

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--------------TGLMAAAREA- 105
                +  +      V  RL I    ++ ++   Q                         
Sbjct: 62  KQGCCSASDAEDARRVADRLDIPFYALNLQSEFRQIIDYFIDEYTVGRTPNPCVQCNNWL 121

Query: 106 RYALISEHAKTINATLIMTAHTF------DDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
           ++  + ++A ++ A  + T H         D       R   D  ++   L G+   +L 
Sbjct: 122 KFGKLFDYADSVGAEFVATGHYARLAQIDGDLA---LCRGVDDGKDQSYVLFGIKKELLP 178

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +      P     +  IR    +  +   +
Sbjct: 179 RM----LLPIGDYYKPQIRKLAHEIGLRVAD 205


>gi|262306051|gb|ACY45618.1| gln amidotransferase [Hadrurus arizonensis]
          Length = 196

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++  V    +L+ VSGG DS      LH  L +      +  AI +D+   R+    E 
Sbjct: 36  YIKRTVGNNRVLMLVSGGVDSTVCAALLHKALKED-----QVIAIHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V     +L +   V++
Sbjct: 88  VQVEQSLRKLGLKLQVIN 105


>gi|254479828|ref|ZP_05093076.1| GMP synthase, C-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039390|gb|EEB80049.1| GMP synthase, C-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 525

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 27/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E     VR+ V    +L+ +SGG DS  +   LH  + D      + + + VD+  L
Sbjct: 212 NIVEDAIARVRATVGSDKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTG-LMAAA--REARY-------ALIS 111
           R    D   +V D   S + +  +V+         G L   A   + R         +  
Sbjct: 266 RLNEGD---HVMDMFASNMGV--TVIRADAESLFLGKLQGEADPEKKRKIIGNTFIDIFD 320

Query: 112 EHA-KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           E A K  N   +     + D +E+      +      +        +  D+NL +  P  
Sbjct: 321 EQATKLQNVNWLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPDDMNLELVEPLR 377

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R   L+  + +
Sbjct: 378 ELFKDEVRKIGLELGLPY 395


>gi|254368479|ref|ZP_04984496.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121373|gb|EDO65574.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 359

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 59/206 (28%), Gaps = 47/206 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKT 116
              VC  + I    +++                 A R          E ++     +   
Sbjct: 56  AQAVCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGM-GLSGMCD------TILYDLNLWISRPF 169
           +    I T H          +R   D + + + GL    D      T+  +       P 
Sbjct: 116 LGGDYIATGHYAQ-------IRLAADGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPI 168

Query: 170 LRCRREDIRSFLLQRNISWCE--DPS 193
               +  +R    + N+   +  D +
Sbjct: 169 GNIEKSKVREIAKENNLVTFDKKDST 194


>gi|29830022|ref|NP_824656.1| GMP synthase [Streptomyces avermitilis MA-4680]
 gi|44887993|sp|Q82HM9|GUAA_STRAW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29607132|dbj|BAC71191.1| putative GMP synthase [Streptomyces avermitilis MA-4680]
          Length = 525

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 24/189 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
            +R  V     +  +SGG DS     A+ + L  ++ G  + + + VDH L R+   ++V
Sbjct: 216 LIREQVGTRRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLMRQGETEQV 269

Query: 71  R--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF 128
              +V+    +L++  +   +  +          R+          +   A +I      
Sbjct: 270 EKDFVAATGVQLKVVDAEERFLTALKGVSDPEEKRKIIGREFIRVFEQAQAEIIA----- 324

Query: 129 DDQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIR 178
           D+  E       T+Y          G            +  DL   +  P  +  ++++R
Sbjct: 325 DEGPEVAFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPEDLEFELIEPLRKLFKDEVR 384

Query: 179 SFLLQRNIS 187
               +  + 
Sbjct: 385 MVGQELGLP 393


>gi|11497869|ref|NP_069091.1| GMP synthase subunit B [Archaeoglobus fulgidus DSM 4304]
 gi|13626770|sp|O29986|GUAAB_ARCFU RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|2650384|gb|AAB90977.1| GMP synthase (guaA-1) [Archaeoglobus fulgidus DSM 4304]
          Length = 303

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 25/191 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             +E+    +R  V     ++A+SGG DS    +  H  L DR         + VD  L 
Sbjct: 5   KFVENAIKEIRERVKDGKAIIALSGGVDSSVCTVLAHKALGDRLIP------VFVDTGLM 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAR---EARYALISEHAKT 116
           RE    E   + ++   + +         +K  K  T      +   E    +    A+ 
Sbjct: 59  REG---EPEKIKEIFGNMGLVFIDAKEEFFKALKGVTDPEEKRKVIGELFVRIFERVAEE 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            NA  ++    + D +E       +   +    + G   +  +     +  P     +++
Sbjct: 116 HNAEYLIQGTIYPDIIE------SQGGIKSHHNVGGFPTSYKFKD---VIEPLRELYKDE 166

Query: 177 IRSFLLQRNIS 187
           +R       + 
Sbjct: 167 VREVARYLGLP 177


>gi|121613709|ref|YP_001000924.1| GMP synthase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005834|ref|ZP_02271592.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|226738414|sp|A1W0N3|GUAA_CAMJJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|87249935|gb|EAQ72894.1| GMP synthase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 511

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 27/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGNDKVLCAVSGGVDSSVVAALLASAIKE------QVIVVFVDNGLLRSGEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARY-------ALISEHAKTI-NAT 120
           ++    + L I    +S   S+     +A  R   + R         +  E AK   +  
Sbjct: 263 FMFK--NTLGIDL--ISIDASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVK 318

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+  + + +               +   +NL +  P     ++++R+ 
Sbjct: 319 YLAQGTLYTDIIESSVVGASKTIKS-----HHNVGGLPEKMNLKLIEPLKEIFKDEVRAL 373

Query: 181 LLQRNIS 187
            L+  +S
Sbjct: 374 GLELGLS 380


>gi|86152664|ref|ZP_01070869.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85843549|gb|EAQ60759.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 511

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 27/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGNDKVLCAVSGGVDSSVVAALLASAIKE------QVIVVFVDNGLLRSGEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARY-------ALISEHAKTI-NAT 120
           ++    + L I    +S   S+     +A  R   + R         +  E AK   +  
Sbjct: 263 FMFK--NTLGIDL--ISIDASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVK 318

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+  + + +               +   +NL +  P     ++++R+ 
Sbjct: 319 YLAQGTLYTDIIESSVVGASKTIKS-----HHNVGGLPEKMNLKLIEPLKEIFKDEVRAL 373

Query: 181 LLQRNIS 187
            L+  +S
Sbjct: 374 GLELGLS 380


>gi|86150709|ref|ZP_01068925.1| GMP synthase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315124708|ref|YP_004066712.1| GMP synthase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|85841879|gb|EAQ59125.1| GMP synthase [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018430|gb|ADT66523.1| GMP synthase [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 511

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 27/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGNDKVLCAVSGGVDSSVVAALLASAIKE------QVIVVFVDNGLLRSGEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARY-------ALISEHAKTI-NAT 120
           ++    + L I    +S   S+     +A  R   + R         +  E AK   +  
Sbjct: 263 FMFK--NTLGIDL--ISIDASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVK 318

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+  + + +               +   +NL +  P     ++++R+ 
Sbjct: 319 YLAQGTLYTDIIESSVVGASKTIKS-----HHNVGGLPEKMNLKLIEPLKEIFKDEVRAL 373

Query: 181 LLQRNIS 187
            L+  +S
Sbjct: 374 GLELGLS 380


>gi|332290675|ref|YP_004429284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168761|gb|AEE18016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 397

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 27/127 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHCLRETAKD--EVRYVSD 75
           ++V +SGG DS      L     +            ++++ D C      D  +   V  
Sbjct: 4   VVVGLSGGVDSSVTAHLLKEQGYNVIGLFMKNWHDDSVTISDEC--PWLDDSNDAMLV-- 59

Query: 76  VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAKTINA 119
              +L I    V       +                       RE ++ +  + A ++ A
Sbjct: 60  -AEKLGIPFQTVDLSEQYRERIVNYMFKEYEMGRTPNPDVLCNREIKFDVFMKIALSLGA 118

Query: 120 TLIMTAH 126
             + T H
Sbjct: 119 DYVATGH 125


>gi|254392021|ref|ZP_05007212.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
 gi|326442932|ref|ZP_08217666.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
 gi|197705699|gb|EDY51511.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
          Length = 528

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 69/201 (34%), Gaps = 29/201 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R+ V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 208 NVIEEQVTAIRAQVGTKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 261

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   +  +          R+          +   A 
Sbjct: 262 RKGETEQVEKDFVAATGVQLKVVDAEERFLAALAGVSDPEEKRKIIGREFIRVFEQAQAE 321

Query: 121 LIMTAHTFD--------------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           ++    + D              D +E+             +        +  DL   + 
Sbjct: 322 IVAEG-SADGEEVAFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLEFQLV 375

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P  +  ++++R    +  + 
Sbjct: 376 EPLRQLFKDEVRMVGQELGLP 396


>gi|171910032|ref|ZP_02925502.1| hypothetical protein VspiD_02630 [Verrucomicrobium spinosum DSM
           4136]
          Length = 273

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 27/181 (14%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRY 72
           R L       VA SGG DS  LL     VL D + G +  SA      L R+   D    
Sbjct: 9   RHLAEMKQAAVAFSGGVDSSLLLKVAVDVLGDDAVGVVAVSA-----SLPRKERDDASEL 63

Query: 73  VSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              + +RL +        +   +          ++  YA +  +A+      I+     +
Sbjct: 64  ARFMGARL-VFLETQELDDPAYAANAPNRCFHCKDHVYAALLNYARGQGIPHILDGMNAE 122

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           D   T+ +R  R  A+K    S + +              L   + ++R       +   
Sbjct: 123 D---TLDLRPGRAAAKKHGVSSPLHE--------------LGFSKAEVREAARHLGLPNW 165

Query: 190 E 190
           +
Sbjct: 166 D 166


>gi|182419326|ref|ZP_02950578.1| GMP synthase [Clostridium butyricum 5521]
 gi|237666785|ref|ZP_04526770.1| GMP synthase (glutamine-hydrolyzing) [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376657|gb|EDT74229.1| GMP synthase [Clostridium butyricum 5521]
 gi|237657984|gb|EEP55539.1| GMP synthase (glutamine-hydrolyzing) [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 513

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R+ V     L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 200 SFVEKTIEEIRAKVGNGKALCALSGGVDSSVAAVLLSKAIGK------QLTCVFVDHGLL 253

Query: 63  RETAKDEVR 71
           R+   DEV 
Sbjct: 254 RKNEGDEVE 262


>gi|154337399|ref|XP_001564932.1| GMP synthase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134061971|emb|CAM45055.1| putative glutamine amidotransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 656

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 15/106 (14%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           ++R           +L +A SGG DS    + L   L     G  +   I +DH    L 
Sbjct: 211 ALRLIRERTSNGQKVLCLA-SGGVDSTVCAMLLLKAL-----GPERVVCIHIDHGFMRLH 264

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL 109
           E+A      V +  +   +   +V  ++       +  A+  R A 
Sbjct: 265 ESA-----QVVEALNAAGVRVHLVKAQDDFATASTVMTAKRGRAAY 305


>gi|121998460|ref|YP_001003247.1| GMP synthase [Halorhodospira halophila SL1]
 gi|121589865|gb|ABM62445.1| GMP synthase (glutamine-hydrolyzing) [Halorhodospira halophila SL1]
          Length = 529

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           VR  V   H+++ +SGG DS      LH  + D      + + + VD+ L  +  A   +
Sbjct: 225 VREQVGDRHVVLGLSGGVDSSVTAALLHRAIGD------QLTCVFVDNGLLRQGEADQVM 278

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREARY------ALISEHA-KTINA 119
              +     + +   V+            +G+     + R        +  E A K    
Sbjct: 279 ---ATFARHMGV--RVIHIDAEDRFLTALSGVEDPEEKRRIIGNLFVEIFDEEAGKLQGV 333

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+             +        +   + L +  P     ++++R 
Sbjct: 334 DFLAQGTIYPDVVES---AGNAGGKSHVIKSHHNVGGLPETMKLKLVEPLRELFKDEVRR 390

Query: 180 FLLQRNIS 187
             L+  + 
Sbjct: 391 VGLELGLP 398


>gi|87311761|ref|ZP_01093876.1| hypothetical protein DSM3645_20117 [Blastopirellula marina DSM
           3645]
 gi|87285545|gb|EAQ77464.1| hypothetical protein DSM3645_20117 [Blastopirellula marina DSM
           3645]
          Length = 276

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 39/194 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E      + +       VA+SGG DS  +  A H  L +         A++     R  +
Sbjct: 5   EKAELLTQQIASYQRCAVALSGGVDSAVVAKAAHLALRE------SAVAVTA----RSPS 54

Query: 67  --KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------AREARYALISEHAKTIN 118
               E+     V + + I H +V  + ++    +  A       +   Y+ I      I+
Sbjct: 55  VPASEIEEARRVAAEIGIRHEIVDTQETQNPLYIQNAPDRCFHCKTELYSQIELLVAAID 114

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRRED 176
           A LI+     DDQ               G    GM    +   N  +  P +     + D
Sbjct: 115 APLIINGANVDDQ---------------GDHRPGM----IAAKNHQVRSPLIECGLTKAD 155

Query: 177 IRSFLLQRNISWCE 190
           +R+     N+S  +
Sbjct: 156 VRALAQHWNLSVHD 169


>gi|319943796|ref|ZP_08018077.1| GMP synthase [Lautropia mirabilis ATCC 51599]
 gi|319743029|gb|EFV95435.1| GMP synthase [Lautropia mirabilis ATCC 51599]
          Length = 538

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 209 MRDHIEEAVAAIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 262

Query: 62  L 62
           L
Sbjct: 263 L 263


>gi|260889735|ref|ZP_05900998.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
 gi|260860341|gb|EEX74841.1| tRNA methyl transferase [Leptotrichia hofstadii F0254]
          Length = 229

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 64/197 (32%), Gaps = 42/197 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +++ +SGG DS    I L         V       K +             A+++ + 
Sbjct: 11  KKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDENGVCM--------AEEDYKD 62

Query: 73  VSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKT 116
           V  V  +L I +  V++      K  T  +   ++ R             +    ++A  
Sbjct: 63  VIAVAEQLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMK 122

Query: 117 INATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  + T H         D ++++  +R   D  ++   L  +    L      +  P 
Sbjct: 123 LGADYVATGHYARIIHEEKDGKIKSTMLRGIDDNKDQTYFLCQLSQEQLEK----VLFPL 178

Query: 170 LRCRREDIRSFLLQRNI 186
               +  IR    + N+
Sbjct: 179 GEYTKPQIREIAEKYNL 195


>gi|291303519|ref|YP_003514797.1| exsB family protein [Stackebrandtia nassauensis DSM 44728]
 gi|290572739|gb|ADD45704.1| ExsB family protein [Stackebrandtia nassauensis DSM 44728]
          Length = 283

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 21/126 (16%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVR 71
            L     +LVA SGG+DS  LL A     + R+ G    +A +    +  +   ++ +  
Sbjct: 19  RLRGHGSLLVAFSGGADSAFLLAA-----ATRALGPDAVAAAT---AVSPSLPPSELDAA 70

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKTINATLIMT 124
              +  + L + H      +   + G  A A +  Y         ++  A  +    I T
Sbjct: 71  --REFAASLGVRHLT-PGTDELSREGYRANAGDRCYFCKSELLDTLNPLASQLGIATIAT 127

Query: 125 AHTFDD 130
               DD
Sbjct: 128 GTNADD 133


>gi|309811460|ref|ZP_07705245.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Dermacoccus sp. Ellin185]
 gi|308434586|gb|EFP58433.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Dermacoccus sp. Ellin185]
          Length = 525

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 39/207 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E VR      +     +  +SGG DS      +   + DR       + + VDH
Sbjct: 206 MAEELVEQVR----EQIGEGRAICGLSGGVDSSVAAAMVQKAIGDR------LTCVFVDH 255

Query: 61  C-LRETAKDEVRYVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL 109
             LR     E   V +   +   +   VV             S P+T      RE    +
Sbjct: 256 GLLRAG---EAEQVKEDFVAATGVDLVVVDASQQFLDALAGQSDPETKRKIIGREF-IRV 311

Query: 110 ISEHAK---------TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
             + A+               ++    + D +E+             +        +  D
Sbjct: 312 FEQAARDIVGAESSSEHPVEFLVQGTLYPDVVES-----GGGTGAANIKSHHNVGGLPDD 366

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
           L   +  P     ++++R   L+  + 
Sbjct: 367 LQFTLVEPLRSLFKDEVRQVGLELGVP 393


>gi|187251179|ref|YP_001875661.1| GMP synthase, large subunit [Elusimicrobium minutum Pei191]
 gi|226738452|sp|B2KCS8|GUAA_ELUMP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|186971339|gb|ACC98324.1| GMP synthase, large subunit [Elusimicrobium minutum Pei191]
          Length = 510

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 68/193 (35%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S + +    ++  +   H++  +SGG DS  +   L   +            I VD   L
Sbjct: 199 SIMTASIAAMKKQIGKGHVICGLSGGVDSSVVAALLAKAIGK------NLYCIYVDTGLL 252

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           R   ++       +  +L++   +V  +          + P+                E 
Sbjct: 253 RTGDRERTE---GLAKKLKVNLKIVDAEKLFLTKLAGVTDPEKKRKIIGALFIEVFEKEA 309

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +A  +     + D +E++ ++   D  +    + G+ +     +NL +  P     
Sbjct: 310 KKFKDAQFLAQGTLYPDVIESMSVKGPSDVIKSHHNVGGLPEK----MNLKLVEPLRFLF 365

Query: 174 REDIRSFLLQRNI 186
           ++++R+   +  +
Sbjct: 366 KDEVRALGRELGL 378


>gi|159904616|ref|YP_001548278.1| putative ATP binding-like protein [Methanococcus maripaludis C6]
 gi|159886109|gb|ABX01046.1| putative ATP binding related protein [Methanococcus maripaludis C6]
          Length = 291

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRLR 81
           ++  SGG DS+  L  L   L  R         ++VD        +E      +V     
Sbjct: 70  ILGFSGGKDSVVALYLLVKELRIRPL------CVTVD---NGYLAEEALTNCKNVAKHFG 120

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   V++   +K                 +     I + A+  N   I+T H
Sbjct: 121 VDWLVINKDFTKFFKETISKGESPCRVCSDMNMHEIWQFARQTNIDTIVTGH 172


>gi|150403600|ref|YP_001330894.1| putative ATP binding-like protein [Methanococcus maripaludis C7]
 gi|150034630|gb|ABR66743.1| putative ATP binding related protein [Methanococcus maripaludis C7]
          Length = 291

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRLR 81
           ++  SGG DS+  L  L   L  R         ++VD        +E      +V     
Sbjct: 70  ILGFSGGKDSVVALYLLVKELRIRPL------CVTVD---NGYLAEEALTNCKNVAKHFG 120

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   V++   +K                 +     I + A+  N   I+T H
Sbjct: 121 VDWLVINKDFTKFFKETISKGESPCRVCSDMNMHEIWQFARQTNIDTIVTGH 172


>gi|254804264|ref|YP_003082485.1| GMP synthase [Neisseria meningitidis alpha14]
 gi|254667806|emb|CBA03780.1| GMP synthase [Neisseria meningitidis alpha14]
          Length = 521

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 62/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH L R 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E       E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDVEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|254419496|ref|ZP_05033220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas sp. BAL3]
 gi|196185673|gb|EDX80649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas sp. BAL3]
          Length = 400

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 27/144 (18%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--L 62
            +ES R  V  L   A ++ A+SGG DS  +   LH    D     ++      DH   L
Sbjct: 21  AVESARAAV-GLPVGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLY----DHGAAL 75

Query: 63  RET----AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR--------------- 103
           ++     A  ++         + I H V+ +++      +   A                
Sbjct: 76  KKKGACCAGQDIHDARLAAEMIGIPHYVLDYESRFKDAVIDQFADSYLKGQTPVPCIRCN 135

Query: 104 -EARYALISEHAKTINATLIMTAH 126
              ++  + + A+ + A  + T H
Sbjct: 136 QTVKFRDLLDVARDLGAEAMATGH 159


>gi|322388227|ref|ZP_08061831.1| GMP synthase [Streptococcus infantis ATCC 700779]
 gi|321140899|gb|EFX36400.1| GMP synthase [Streptococcus infantis ATCC 700779]
          Length = 414

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 234 IREKVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 287

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 288 EMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 339

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 340 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 393

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 394 VRALGTELGMPDHIVWR 410


>gi|319947042|ref|ZP_08021276.1| GMP synthase [Streptococcus australis ATCC 700641]
 gi|319747090|gb|EFV99349.1| GMP synthase [Streptococcus australis ATCC 700641]
          Length = 521

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 220 IREKVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 273

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 274 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 325

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 326 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 379

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 380 VRALGTELGMPDHIVWR 396


>gi|227328663|ref|ZP_03832687.1| GMP synthase [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 525

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V   H+++ +SGG DS    + LH  + DR       + + VD+  LR   A   +
Sbjct: 221 IREQVGNDHVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLLRLNEADQVL 274

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
                   +  +    V+ ++            EA+  +I          E +K      
Sbjct: 275 EM---FGDQFGLNIVHVAAEDRFLSELAGEDEPEAKRKIIGRVFVGVFDEEASKQEQVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|219850754|ref|YP_002465186.1| GMP synthase subunit B [Methanosphaerula palustris E1-9c]
 gi|254799664|sp|B8GIB2|GUAAB_METPE RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|219545013|gb|ACL15463.1| GMP synthase, large subunit [Methanosphaerula palustris E1-9c]
          Length = 305

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 21/180 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R L   A +++A+SGG DS          + +R         I VD  L R+   D +R
Sbjct: 15  IRELTADARVVMALSGGVDSSVCAALAAQAIGERLEP------IYVDTGLMRKGETDRIR 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA---RY-ALISEHAKTINATLIMTAHT 127
           ++      LRI  +   + ++          R+    R+  +    A+   AT+++    
Sbjct: 69  HLFGH-LNLRIVDASDEFLDALAGVADPETKRKIIGERFIRVFEREAEKTGATVLLQGTI 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + D++E           +    + GM   I +     +  P     ++++R       + 
Sbjct: 128 YPDRIE------SEGGIKSHHNVGGMPLGIAF---TQVLEPLRDLYKDEVREVAGALGLP 178


>gi|47094954|ref|ZP_00232567.1| GMP synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|254898730|ref|ZP_05258654.1| GMP synthase [Listeria monocytogenes J0161]
 gi|254911781|ref|ZP_05261793.1| GMP synthase [Listeria monocytogenes J2818]
 gi|254936107|ref|ZP_05267804.1| GMP synthase [Listeria monocytogenes F6900]
 gi|47016572|gb|EAL07492.1| GMP synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|258608697|gb|EEW21305.1| GMP synthase [Listeria monocytogenes F6900]
 gi|293589733|gb|EFF98067.1| GMP synthase [Listeria monocytogenes J2818]
          Length = 514

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+    E  
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKG---EAD 263

Query: 72  YVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V         + I       +        S P+        E  Y    E  K      
Sbjct: 264 QVMTTLQGEFNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R+  
Sbjct: 324 LAQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALG 377

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 378 TELGMPDAIVWR 389


>gi|322831780|ref|YP_004211807.1| GMP synthase, large subunit [Rahnella sp. Y9602]
 gi|321166981|gb|ADW72680.1| GMP synthase, large subunit [Rahnella sp. Y9602]
          Length = 525

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  +   H+++ +SGG DS    + LH  + DR       + + VD+  L
Sbjct: 212 KIIEDAVERLRVQIGDDHVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           R   A   +        R  +    V+ +           +P+       R        E
Sbjct: 266 RLNEADQVLEM---FGDRFGLNIVHVAAEERFLSALAGVDEPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQDEVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|311279962|ref|YP_003942193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae SCF1]
 gi|308749157|gb|ADO48909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterobacter cloacae SCF1]
          Length = 369

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 33/133 (24%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNW----------EEDDGEEYCTAAADL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 117 AEDLGADYIATGH 129


>gi|225026615|ref|ZP_03715807.1| hypothetical protein EUBHAL_00866 [Eubacterium hallii DSM 3353]
 gi|224956065|gb|EEG37274.1| hypothetical protein EUBHAL_00866 [Eubacterium hallii DSM 3353]
          Length = 274

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 25/135 (18%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +  +++ L     + VA  GG DS  LL   H  L +      K  A++        +
Sbjct: 11  EDLENYLKEL---GSVAVAFFGGVDSTFLLKVAHDTLGE------KCIAVT------AKS 55

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKT 116
               + E++     C +  I H VV  +    +             ++  +  I + AK 
Sbjct: 56  CSFPERELKEAKAFCEKEGIRHLVVESEELDIEGFRHNPKNRCYLCKKELFEKIWKIAKE 115

Query: 117 INATLIMTAHTFDDQ 131
            +   I     FDD 
Sbjct: 116 EHVVAIAEGSNFDDN 130


>gi|126653986|ref|ZP_01725821.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
 gi|126589503|gb|EAZ83646.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Bacillus sp. B14905]
          Length = 137

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 31/129 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +    +        A ++   V
Sbjct: 11  RVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDDTDENGVCT--------ATEDYDDV 62

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYALISEHAKTI 117
             VC+++ I +  V+++           L    A R          E ++    EHA ++
Sbjct: 63  IKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMSL 122

Query: 118 NATLIMTAH 126
            A  + T H
Sbjct: 123 GADYLATGH 131


>gi|257093517|ref|YP_003167158.1| GMP synthase [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046041|gb|ACV35229.1| GMP synthase, large subunit [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 521

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 24/193 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   +RS V    +++ +SGG DS      +H  + D      + + + VD+  LR  
Sbjct: 212 EAVAR-IRSQVGHDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRLN 264

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
              E   V       L +    V             S P+       RE      +E ++
Sbjct: 265 ---EAEQVMQTFARNLGVKVIHVDAAARFLGHLQGVSDPEQKRKIIGREFVEVFQAEASR 321

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             NA  +     + D +E+      +      +        +   LNL +  P     ++
Sbjct: 322 LDNARWLAQGTIYPDVIES---AGAKTKKAHTIKSHHNVGGLPETLNLDLLEPLRELFKD 378

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 379 EVRELGVALGLPH 391


>gi|291278885|ref|YP_003495720.1| GMP synthase glutamine-hydrolyzing [Deferribacter desulfuricans
           SSM1]
 gi|290753587|dbj|BAI79964.1| GMP synthase, glutamine-hydrolyzing [Deferribacter desulfuricans
           SSM1]
          Length = 517

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 24/189 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + L+  +          + + V++  LR+   ++V 
Sbjct: 214 IREQVGDKKVLCALSGGVDSSVVAVLLNEAIGK------NLTCVFVNNGLLRKNEAEQV- 266

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKTIN-ATLI 122
            V        I    V  +    +        E +          +    A+ +     +
Sbjct: 267 -VKTFRDNFNINLIFVDAEEEFLKALRGVTDPEKKRKIIGNLFIKIFEREAEKLGRFDFL 325

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V  +      +    + G+ +     +N  +  P     ++++R   L
Sbjct: 326 AQGTLYPDVIESVSFKGPSATIKTHHNVGGLPEK----MNFKLIEPLRELFKDEVRQVGL 381

Query: 183 QRNISWCED 191
           +  +   ED
Sbjct: 382 ELGLP--ED 388


>gi|294814542|ref|ZP_06773185.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
 gi|294327141|gb|EFG08784.1| GMP synthase [Streptomyces clavuligerus ATCC 27064]
          Length = 551

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 69/201 (34%), Gaps = 29/201 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R+ V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 231 NVIEEQVTAIRAQVGTKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 284

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   +  +          R+          +   A 
Sbjct: 285 RKGETEQVEKDFVAATGVQLKVVDAEERFLAALAGVSDPEEKRKIIGREFIRVFEQAQAE 344

Query: 121 LIMTAHTFD--------------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           ++    + D              D +E+             +        +  DL   + 
Sbjct: 345 IVAEG-SADGEEVAFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLEFQLV 398

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P  +  ++++R    +  + 
Sbjct: 399 EPLRQLFKDEVRMVGQELGLP 419


>gi|332140738|ref|YP_004426476.1| putative regulator protein [Alteromonas macleodii str. 'Deep
          ecotype']
 gi|254764297|sp|B4RTX3|QUEC_ALTMD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|327550760|gb|AEA97478.1| putative regulator protein [Alteromonas macleodii str. 'Deep
          ecotype']
          Length = 218

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          +++V  SGG DS  +L    ++ + +     K  A+S D+  R   K E+ Y + VC+ L
Sbjct: 4  NVVVIYSGGMDSFTVLH--KALRAGK-----KVHALSFDYGQRH--KKELDYAAAVCTSL 54

Query: 81 RIAHSVVSWKN 91
           + H +V    
Sbjct: 55 GVPHKIVDISA 65


>gi|320095663|ref|ZP_08027319.1| GMP synthase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977384|gb|EFW09071.1| GMP synthase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 526

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 66/193 (34%), Gaps = 31/193 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V  A ++ A+SGG DS      +H  + D      + +   +DH  LR   +++V 
Sbjct: 215 IRAQVGGAQVICALSGGVDSSVAAALVHKAVGD------QLTCFFIDHGLLRAGEREQVE 268

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARY---ALISEHAKTINA 119
              D    + I                  ++P+T      RE      A   +  + + A
Sbjct: 269 --GDYARGMGIRVITCDESQRFLDALAGVTEPETKRKIIGREFIRSFEAAQKQVVEQVGA 326

Query: 120 T-----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +      ++    + D +E+             +        +  D+   +  P     +
Sbjct: 327 SGGEVKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDMAFELVEPLRTLFK 381

Query: 175 EDIRSFLLQRNIS 187
           +++R+   +  + 
Sbjct: 382 DEVRAVGRELGLP 394


>gi|319939115|ref|ZP_08013479.1| GMP synthase [Streptococcus anginosus 1_2_62CV]
 gi|319812165|gb|EFW08431.1| GMP synthase [Streptococcus anginosus 1_2_62CV]
          Length = 519

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 218 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 271

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 272 DSLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 323

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 324 KDVRFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFKLIEPLNTLYKDE 377

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 378 VRALGTELGMPDEIVWR 394


>gi|254420777|ref|ZP_05034501.1| ExsB family [Brevundimonas sp. BAL3]
 gi|196186954|gb|EDX81930.1| ExsB family [Brevundimonas sp. BAL3]
          Length = 520

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 31/190 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS    + +H  + D      + + + VD   LR   KDE +
Sbjct: 216 IREQVGDAKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDTGLLR---KDEAK 266

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V+ +      I    V             S P+T      R        E  K   A  
Sbjct: 267 QVTTLFREHYNIPLVHVDASKEFLGELAGQSDPETKRKIIGRVFIEIFDREANKVEGAEF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDI 177
           +     + D +E+V        +  G             +   + L +  P     ++++
Sbjct: 327 LAQGTLYPDVIESV-------SSSSGKAHVIKSHHNVGGLPDYMKLKLVEPLRELFKDEV 379

Query: 178 RSFLLQRNIS 187
           R+   +  +S
Sbjct: 380 RALGRELGLS 389


>gi|149916375|ref|ZP_01904895.1| hypothetical protein RAZWK3B_12312 [Roseobacter sp. AzwK-3b]
 gi|149809829|gb|EDM69681.1| hypothetical protein RAZWK3B_12312 [Roseobacter sp. AzwK-3b]
          Length = 230

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I++  SGG DS+ L    H V ++     +    +S D+  R     E+ + +    RL 
Sbjct: 4  IVI-CSGGLDSVSLA---HKVAAEHELAGL----LSFDYGQRH--AKELDFAARCAERLG 53

Query: 82 IAHSVVSWKNSK 93
          +AH VV  +   
Sbjct: 54 VAHRVVDLRAVG 65


>gi|153952329|ref|YP_001397662.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|226738413|sp|A7H2D2|GUAA_CAMJD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|152939775|gb|ABS44516.1| GMP synthase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 511

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 27/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGNDKVLCAVSGGVDSSVVAALLASAIKE------QVIVVFVDNGLLRSGEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARY-------ALISEHAKTI-NAT 120
           ++    + L I    +S   S+     +A  R   + R         +  E AK   +  
Sbjct: 263 FMFK--NTLGIDL--ISIDASEIFLSRLANVRDPEQKRKIIGNTFIEIFEEEAKKHKDVK 318

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+  + + +               +   +NL +  P     ++++R+ 
Sbjct: 319 YLAQGTLYTDIIESSVVGASKTIKS-----HHNVGGLPEKINLKLIEPLKEIFKDEVRAL 373

Query: 181 LLQRNIS 187
            L+  +S
Sbjct: 374 GLELGLS 380


>gi|282859128|ref|ZP_06268255.1| protein ExsB [Prevotella bivia JCVIHMP010]
 gi|282588083|gb|EFB93261.1| protein ExsB [Prevotella bivia JCVIHMP010]
          Length = 217

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 39/186 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +I   AIS D+  +  +K+E+   +  C +L I H 
Sbjct: 8   VSGGLDSVTLLY--------EKADEIAL-AISFDYG-QNHSKNELPLAAYHCEKLGIRHI 57

Query: 86  VVSWK--NSKPQTGLMAAAR---EARYA------------------LISEHAKTINATLI 122
           V+  K  N   ++ L+       E  Y                   + +  A++     +
Sbjct: 58  VIPLKFINEYFKSSLLDGGEAIPEGHYEENNMKSTVVPFRNGIMLSIATGIAESHALKRV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           M A+   D          R    + M  +    T +   N+ +  P+    + +I     
Sbjct: 118 MIANHGGDHT---IYPDCRPAFIQAMNGATATGTYI---NVQVEAPYTNITKAEIVHRGA 171

Query: 183 QRNISW 188
              I +
Sbjct: 172 ALGIDY 177


>gi|154149044|ref|YP_001406760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter hominis ATCC BAA-381]
 gi|205811613|sp|A7I2L9|MNMA_CAMHC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|153805053|gb|ABS52060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter hominis ATCC BAA-381]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 29/180 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            ILVA+SGG DS      L     +     +K       H   +     +  V DV + L
Sbjct: 2   KILVALSGGVDSAVSAKILKDAGYEIEGCYMKL------HGRDDYHAKNIEKVQDVGNFL 55

Query: 81  RIAHSVVSW---------------KNSKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
            I   ++                           A   R  ++    + A++     I T
Sbjct: 56  EIKTHILDLCDDFKREVFEPFLQTYKVGKTPNPCALCNRTIKFGKFLDFARSKGCDKIAT 115

Query: 125 AHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H    ++E   ++ +     ++   L+ +   ++ +    I  P     ++D++ F   
Sbjct: 116 GHYA--KIENNLIKSAVDLSKDQSYFLANIEPRVIPN----IVFPLGNMLKKDVKKFAAS 169


>gi|134103131|ref|YP_001108792.1| GMP synthase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003926|ref|ZP_06561899.1| GMP synthase [Saccharopolyspora erythraea NRRL 2338]
 gi|133915754|emb|CAM05867.1| GMP synthase glutamine amidotransferase [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 528

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 33/203 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++     +R  V     +  +SGG DS     A+ + L  R+ G  + + + VDH  L
Sbjct: 208 SIVDDTVAAIREQVGDKRAICGLSGGVDS-----AVAAALVQRAVGD-QLTCVFVDHGLL 261

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH 113
           R   + +V    D  +   +    +  ++           P+       RE    +  + 
Sbjct: 262 RAGERAQVE--RDFVAATGVRLVTIDARDRFLAALAGVTDPEEKRKIIGREF-IRVFEQA 318

Query: 114 AKTINATLIMTAHTFD---------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           A+ + A         D         D +E+             +        +  DL   
Sbjct: 319 ARDLQAEAGAEGEQIDFLVQGTLYPDVVES-----GGGSGAANIKSHHNVGGLPEDLQFD 373

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++R   L+  + 
Sbjct: 374 LVEPLRALFKDEVRRVGLELGLP 396


>gi|297561372|ref|YP_003680346.1| exsB protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
          43111]
 gi|296845820|gb|ADH67840.1| exsB protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM
          43111]
          Length = 243

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
          P  ++V  SGG DS  LL    ++       + +  A++V++  R     EV     +  
Sbjct: 15 PFTVVVVFSGGMDSTTLLAHFAAL-------RFRLVAVTVEYGQRHG--KEVDAARAIAR 65

Query: 79 RLRIAHSVV 87
               H ++
Sbjct: 66 HYGAEHHIL 74


>gi|222445379|ref|ZP_03607894.1| hypothetical protein METSMIALI_01007 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434944|gb|EEE42109.1| hypothetical protein METSMIALI_01007 [Methanobrevibacter smithii
           DSM 2375]
          Length = 391

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 55/192 (28%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +++A SGG D S+        +L ++    ++     VD        +E+     +  
Sbjct: 2   DKVVLAFSGGLDTSVC-----VKLLEEK--YDVEVITACVDVG---QGDEEIAKAEKMAK 51

Query: 79  RL-RIAHSVVSWKNS--------KPQTGLM--------AAAREARYALISEHAKTINATL 121
            +    H  +  K            +            A AR      I + AK   AT 
Sbjct: 52  EIGGYKHYTIDAKEEFANEYIARGIKANAEYEGYPLSTALARPLIAQKIIDIAKKEGATA 111

Query: 122 IMTAHT--FDDQ--LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRE 175
           I    T   +DQ   E V +                        +L I  P   L   R 
Sbjct: 112 IAHGCTGKGNDQFRFEAVILAMS---------------------DLDIIAPIRELNLTRT 150

Query: 176 DIRSFLLQRNIS 187
           + +++  +  I 
Sbjct: 151 EEQAYAAENGIK 162


>gi|70985853|ref|XP_748432.1| GMP synthase [Aspergillus fumigatus Af293]
 gi|74668392|sp|Q4WFT3|GUAA_ASPFU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|66846061|gb|EAL86394.1| GMP synthase [Aspergillus fumigatus Af293]
 gi|159128433|gb|EDP53548.1| GMP synthase [Aspergillus fumigatus A1163]
          Length = 557

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 29/205 (14%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHC 61
             ++     +R LV    H+L AVSGG DS      +   + DR      F A+ V + C
Sbjct: 214 KFVDQEILRIRKLVGETDHVLGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVNNGC 267

Query: 62  LRETAKDEVRYVSDVCSR-LRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116
           +R     E   V++  ++ L I  +VV     + +           R    A   +  + 
Sbjct: 268 MRLN---ECETVAETLNKHLGINLTVVDASKRFLDGLKGVTDPEKKRMFIGATFIDVFEE 324

Query: 117 INATLIMTAHTFD-------------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
               +   A                 D +E++  +      +    +  +   ++    +
Sbjct: 325 EAEKIEALAENSGAKVKWFLQGTLYPDVIESISFKGPSATIKTHHNVGALPKRMIEGQGM 384

Query: 164 WISRPFLRCRREDIRSFLLQRNISW 188
            +  P     ++++R    +  I+ 
Sbjct: 385 KLIEPLRELFKDEVRQLGRELGIAH 409


>gi|325269171|ref|ZP_08135791.1| GMP synthase [Prevotella multiformis DSM 16608]
 gi|324988558|gb|EGC20521.1| GMP synthase [Prevotella multiformis DSM 16608]
          Length = 514

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 71/198 (35%), Gaps = 33/198 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +R  V    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFVESTVQEIRRQVGDDRVILGLSGGVDSSVCAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALIS 111
           R+       +   + +   +  +V+    S           +P+       R+      +
Sbjct: 252 RKN-----EFAKVMEAYKGLGLNVIGVDASEKFFKDLEGVTEPEQKRKIIGRDFVEVFNA 306

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPF 169
           E  K  +A  +     + D++E++        +  GM +        +  ++ L +  P 
Sbjct: 307 EAKKITDARWLAQGTIYPDRIESL--------SITGMIIKSHHNVGGLPEEMRLQLCEPL 358

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    Q  + 
Sbjct: 359 RWLFKDEVRRVGYQLGMP 376


>gi|319651666|ref|ZP_08005793.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
 gi|317396733|gb|EFV77444.1| TrmU protein [Bacillus sp. 2_A_57_CT2]
          Length = 371

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 31/137 (22%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRET 65
           ++       ++V +SGG DS    + L         +         +    +        
Sbjct: 1   MKKDPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDENGVCT-------- 52

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYAL 109
           A ++   V  VC+++ I +  V+++           L    A R          E ++  
Sbjct: 53  ATEDYNDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKA 112

Query: 110 ISEHAKTINATLIMTAH 126
             EHA ++ A  + T H
Sbjct: 113 FLEHAMSLGADYLATGH 129


>gi|257125929|ref|YP_003164043.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
 gi|257049868|gb|ACV39052.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
          Length = 364

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 42/198 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +++ +SGG DS    I L         V       K +             A+++ + 
Sbjct: 5   KKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDENGVCM--------AEEDYKD 56

Query: 73  VSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKT 116
           V  V  +L I +  V++      K  T  +   ++ R             +    ++A  
Sbjct: 57  VIAVAEQLGIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMK 116

Query: 117 INATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           I A  + T H         D ++++  +R   D  ++   L  +    L      +  P 
Sbjct: 117 IGADYVATGHYARIIHEEKDGEMKSTMLRGIDDNKDQTYFLCQLNQEQLEK----VLFPL 172

Query: 170 LRCRREDIRSFLLQRNIS 187
               +  IR    + N++
Sbjct: 173 GEYTKPKIREIAEKYNLA 190


>gi|254474583|ref|ZP_05087969.1| exsB protein [Ruegeria sp. R11]
 gi|214028826|gb|EEB69661.1| exsB protein [Ruegeria sp. R11]
          Length = 232

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 54/189 (28%), Gaps = 38/189 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS+ L   L +              +S D+  R   + E+ Y +    RL + H 
Sbjct: 7   CSGGLDSVSLAHVLAAQGQLSRL-------VSFDYGQRH--RKELDYAAACGQRLGVPHE 57

Query: 86  VVSWKNSKPQTGLMAAAREA-----RYA------------------LISEHAKTINATLI 122
           ++  ++        A   +       YA                  +    A     T +
Sbjct: 58  IIDMRSIGAALSGSALTDDIDVPDGHYAEETMKVTVVPNRNAIMLTIAYGIAAAKGDTAV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD-LNLWISRPFLRCRREDIRSFL 181
            TA    D          R           M    L    ++ +  PF+   + DI +  
Sbjct: 118 ATAVHGGDH---FIYPDCRPAFTD--AFDAMQRMALDGYADVSLVTPFVHRSKGDIVAAG 172

Query: 182 LQRNISWCE 190
              N  + E
Sbjct: 173 AAVNTPFAE 181


>gi|32475335|ref|NP_868329.1| GMP synthase [Rhodopirellula baltica SH 1]
 gi|44887935|sp|Q7UFS3|GUAA_RHOBA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|32445876|emb|CAD78607.1| GMP synthase [Rhodopirellula baltica SH 1]
          Length = 587

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 31/190 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS  +   L+  +        + S I VD+  LR+    E +
Sbjct: 283 IRKQVGNKRVICGLSGGVDSSVVAALLYKAI------GPQLSCILVDNGLLRKN---EQQ 333

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISE----HAKTINATL 121
            V  +  +  +    +V  ++                R   +A I       AK  +A  
Sbjct: 334 IVLEEFSNHFKTDLHIVEAEDRFLADLAGIDEPQEKRRRIGHAFIECFKDEAAKIEDAHF 393

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDI 177
           +     + D +E+          + G      L      +  +L   +  P     ++++
Sbjct: 394 LAQGTLYPDVIES-------GADKDGPAATIKLHHNVGGLPEELGFELIEPLRDLFKDEV 446

Query: 178 RSFLLQRNIS 187
           R   L+  + 
Sbjct: 447 RRLGLELGLP 456


>gi|330988020|gb|EGH86123.1| ExsB family protein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 201

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS+ L            + K    A ++++  +  A+ E+     +C +L I+H 
Sbjct: 7   LSGGMDSLALA-----------WWKRPDIAFTLNYG-QLAAQAEIEASRTICRQLNISHQ 54

Query: 86  VVSWKNSKPQTGLMAAARE 104
           V+     +  +G MA  R 
Sbjct: 55  VIEIDCRQLGSGDMAGTRA 73


>gi|322373059|ref|ZP_08047595.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus sp. C150]
 gi|321278101|gb|EFX55170.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus sp. C150]
          Length = 520

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKGEGD--- 269

Query: 72  YVSDVCSRLRIAH--SVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTIN 118
               V   L      +++    SK    L+A              E  Y    E +K   
Sbjct: 270 ---QVMEMLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRNIS 187
           +   +  + 
Sbjct: 381 ALGTEMGMP 389


>gi|312862892|ref|ZP_07723132.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus vestibularis F0396]
 gi|322516905|ref|ZP_08069802.1| GMP synthase [Streptococcus vestibularis ATCC 49124]
 gi|311101752|gb|EFQ59955.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus vestibularis F0396]
 gi|322124528|gb|EFX96010.1| GMP synthase [Streptococcus vestibularis ATCC 49124]
          Length = 520

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKGEGD--- 269

Query: 72  YVSDVCSRLRIAH--SVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTIN 118
               V   L      +++    SK    L+A              E  Y    E +K   
Sbjct: 270 ---QVMEMLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRNIS 187
           +   +  + 
Sbjct: 381 ALGTEMGMP 389


>gi|228476736|ref|ZP_04061402.1| GMP synthase [Streptococcus salivarius SK126]
 gi|228251607|gb|EEK10708.1| GMP synthase [Streptococcus salivarius SK126]
          Length = 520

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 32/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKGEGD--- 269

Query: 72  YVSDVCSRLRIAH--SVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTIN 118
               V   L      +++    SK    L+A              E  Y    E +K   
Sbjct: 270 ---QVMEMLGGKFGLNIIRVDASKRFLDLLAGVDDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRNIS 187
           +   +  + 
Sbjct: 381 ALGTEMGMP 389


>gi|170768217|ref|ZP_02902670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia albertii TW07627]
 gi|170122983|gb|EDS91914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia albertii TW07627]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 49/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 116 AEDLGADYIATGHYVRRADVNGKSRLLRGLDSNKDQSYFLYTLSHEQIAQS----LFPVG 171

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R       +
Sbjct: 172 ELEKPQVRKIAEDLGL 187


>gi|55376178|ref|YP_134034.1| phosphoadenosine phosphosulfate reductase [Haloarcula marismortui
           ATCC 43049]
 gi|55228903|gb|AAV44328.1| phosphoadenosine phosphosulfate reductase [Haloarcula marismortui
           ATCC 43049]
          Length = 326

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 51/178 (28%), Gaps = 31/178 (17%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS   L   +        G I       +  L E+      YV ++  +  +   
Sbjct: 88  CSGGKDSTAALHHTYRNAEFPLDGIIFIDT---NIGLHES----KEYVQNLGEKFDLPVH 140

Query: 86  VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAE 145
           +   +N   +       R  +Y       ++     I      D  L+         +  
Sbjct: 141 IADTRNKADRY----RERIEKYGFAGPTRQSHRFEYIC---NKDKPLQKFL----TGFEG 189

Query: 146 KGMGLSGM-------------CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           + + +SG               D I  D       P  R  + D+  +L +  +   E
Sbjct: 190 QSLLISGATRQESDARYEAVSADGIEQDGTRTFVSPLARWTQSDVDDYLNEHGVEVSE 247


>gi|82702328|ref|YP_411894.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrosospira multiformis ATCC 25196]
 gi|91206811|sp|Q2Y9R9|GUAA_NITMU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|82410393|gb|ABB74502.1| GMP synthase (glutamine-hydrolyzing) [Nitrosospira multiformis ATCC
           25196]
          Length = 522

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 64/189 (33%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +RS V P  +++ +SGG DS      +H  +        + + + VD+  LR     E  
Sbjct: 218 IRSEVGPDEVILGLSGGVDSSVAAALIHRAIGK------QLTCVFVDNGLLRLN---EAE 268

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTG-------LMAAAREARYALIS----EHAKTINA 119
            V D     L +   V+    S+   G         A  R      +     E AK  NA
Sbjct: 269 QVMDTFSRNLGVK--VIHVDASEEFLGHLQGITDPEAKRRIIGREFVEVFQREAAKIANA 326

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +   L+L +  P     ++++R 
Sbjct: 327 RWLAQGTIYPDVIES---AGAKTKKANTIKSHHNVGGLPETLHLKLLEPLRELFKDEVRE 383

Query: 180 FLLQRNISW 188
             L   +  
Sbjct: 384 LGLTLGLPH 392


>gi|330955382|gb|EGH55642.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae Cit 7]
          Length = 177

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 31/130 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L           +K           E        A++++  
Sbjct: 2   KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLAD 53

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              VC ++ I     +     W N          A           RE ++    ++A  
Sbjct: 54  AQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALM 113

Query: 117 INATLIMTAH 126
           + A LI T H
Sbjct: 114 LGADLIATGH 123


>gi|312971270|ref|ZP_07785448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
 gi|310336472|gb|EFQ01658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1827-70]
          Length = 234

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|88798697|ref|ZP_01114280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Reinekea sp. MED297]
 gi|88778460|gb|EAR09652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Reinekea sp. MED297]
          Length = 364

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 53/194 (27%), Gaps = 40/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        AK+++   
Sbjct: 8   KVIVGMSGGVDSSVTAALLLEQGYQVEGLFMK--------NWDEDDGTEYCTAKEDLADA 59

Query: 74  SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTI 117
             V  RL I     +     W N          A           RE ++    E+A T+
Sbjct: 60  QAVADRLGIHLHKANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYALTL 119

Query: 118 NATLIMTAHTFDDQLETVYM----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            A  I T H       T  M    R  R           +           +  P     
Sbjct: 120 GADKIATGH----YARTDTMNGKGRLLRGNDHNKDQTYFLHAVGHEQFEKTLF-PVGELE 174

Query: 174 REDIRSFLLQRNIS 187
           +  +R+   +  ++
Sbjct: 175 KPQVRAIAEKYKLA 188


>gi|114562316|ref|YP_749829.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella frigidimarina NCIMB 400]
 gi|122300411|sp|Q085S4|GUAA_SHEFN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|114333609|gb|ABI70991.1| GMP synthase (glutamine-hydrolyzing) [Shewanella frigidimarina
           NCIMB 400]
          Length = 525

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  +    +++ +SGG DS  + + LH  + D      K + + VD+  L
Sbjct: 212 SIIEDAIERLKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGD------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +       +    V  +N         A  EA+  +I           
Sbjct: 266 RLN---EAEQVLEMFGDHFGLNIVHVDAENRFLDAMAGEAEPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +  D+ + +  P    
Sbjct: 323 SKKCANAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPADMKMGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|222150715|ref|YP_002559868.1| ExsB protein [Macrococcus caseolyticus JCSC5402]
 gi|222119837|dbj|BAH17172.1| ExsB protein [Macrococcus caseolyticus JCSC5402]
          Length = 222

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 63/212 (29%), Gaps = 50/212 (23%)

Query: 13  VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           ++ L     ++V  SGG DS   +  A+H           +   ++ ++  R     E+ 
Sbjct: 1   MKQLNSNKALVV-FSGGQDSTTCMFYAMHHYD--------EVELVTFNYGQRH--ALEID 49

Query: 72  YVSDVCSRLRIAHSVVSWK-----------------NSKPQTGLMAAAREARY-ALISEH 113
               +     + H V+                     +         AR   + +  +  
Sbjct: 50  IAKQIAEEQGLKHHVLDMSLLSQLSPNALTHHDLTIENNDIPNTFVPARNLLFMSFAAAL 109

Query: 114 AKTINATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           A  INA  I+T        ET +      RD   K + ++        DLN  I  P + 
Sbjct: 110 AYQINAKHIITG-----VCETDFSGYPDCRDNFIKSLNVTINLSM---DLNFEIHTPLMW 161

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVR 203
             +++  +                   + R +
Sbjct: 162 LDKKETWALADTLGQ----------LDYIRNK 183


>gi|149188299|ref|ZP_01866593.1| hypothetical protein VSAK1_18934 [Vibrio shilonii AK1]
 gi|148837888|gb|EDL54831.1| hypothetical protein VSAK1_18934 [Vibrio shilonii AK1]
          Length = 273

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 38/190 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           + IE +   ++ L     + VAVSGG DSM L    H VL   +            H + 
Sbjct: 6   NKIERLENQLQQL---GKVTVAVSGGVDSMTLAFVAHRVLGANAKMV---------HSIS 53

Query: 64  ETA-KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                 + + + D  +R         W     ++G +       Y   +   +       
Sbjct: 54  PAVPPQDTQRIEDFATRYG-------WNMMFVESGEIDTP---NYQS-NPVNRCYYCKSC 102

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGM---CDTILYDLNLWISRPFLR--CRREDI 177
           +          T            G  L  +      ++      +  PF+     ++DI
Sbjct: 103 LY---------TTLGSLSFGQVVSGTNLDDLDDYRPGLIAAKEHRVVHPFVDASINKQDI 153

Query: 178 RSFLLQRNIS 187
           R    Q  + 
Sbjct: 154 RDIANQLGLP 163


>gi|15895501|ref|NP_348850.1| tRNA-specific 2-thiouridylase MnmA [Clostridium acetobutylicum ATCC
           824]
 gi|24638326|sp|Q97GY2|MNMA_CLOAB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|15025232|gb|AAK80190.1|AE007723_8 TRNA 5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           PP-loop ATPase [Clostridium acetobutylicum ATCC 824]
 gi|325509648|gb|ADZ21284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium acetobutylicum EA 2018]
          Length = 355

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 62/204 (30%), Gaps = 48/204 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-----------------VLSDRSFGKIKFSAISVDHCL 62
             +++ +SGG DS      L                     +++  G    SA+      
Sbjct: 3   KKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLTPDDAFYTEQEGGCCSLSAV------ 56

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-AR 106
                ++ R V     R+ I   VV++ +   +                    A  +  +
Sbjct: 57  -----EDARRV---AYRIGIPFYVVNFTDIFKEKVIDYFTEEYLNGKTPNPCIACNKYIK 108

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           +  + + A+++ A  I T H      E       R   ++    + +   +  D      
Sbjct: 109 FDALLKKAESLGADYIATGHYCRIVEENGRY-VIRKSEDEKKDQTYVMYNMTQDQLKHTL 167

Query: 167 RPFLRCRREDIRSFLLQRNISWCE 190
            P    +++ IR    +  ++  +
Sbjct: 168 MPCGDYKKDRIREIAREIGLNVFD 191


>gi|268532154|ref|XP_002631205.1| Hypothetical protein CBG03001 [Caenorhabditis briggsae]
          Length = 741

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +RS++    +LV VSGG DS      L     +R+ G  + +A+ +D
Sbjct: 264 IRSIIGDKKVLVMVSGGVDSAVCAALL-----NRALGPGRVTAVHID 305


>gi|331006794|ref|ZP_08330060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC1989]
 gi|330419412|gb|EGG93812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC1989]
          Length = 426

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 48/142 (33%), Gaps = 37/142 (26%)

Query: 16  LVYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------A 66
           L     ++V +SGG DS    LL+     L +  F K             E        A
Sbjct: 57  LPQETRVMVGMSGGVDSSVTALLLQQQGYLVEGLFMK----------NWDEDDGTEYCSA 106

Query: 67  KDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALI 110
           KD++     VC  L I     +     W N          A           RE ++ + 
Sbjct: 107 KDDLADAQRVCDTLGITLHTANFAAEYWDNVFEYFLDEYKAGRTPNPDILCNREIKFKVF 166

Query: 111 SEHAKTINATLIMTAH--TFDD 130
            ++A+ + A +I T H    DD
Sbjct: 167 LDYAQVLGADMIATGHYVRRDD 188


>gi|262039106|ref|ZP_06012439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
 gi|261746895|gb|EEY34401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
          Length = 365

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 40/197 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYV 73
             +++ +SGG DS    I L     D      +++ +   + +    C+ E    +   V
Sbjct: 4   KKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDDNGV----CMSEEDYKD---V 56

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             V  +L I +  V++      K  T  +   ++ R             +    ++A  I
Sbjct: 57  VAVAEQLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDYAMKI 116

Query: 118 NATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  + T H         D ++++V +R   D  ++   L  +    L      +  P  
Sbjct: 117 GADHVATGHYARIIHEEKDGKIKSVMLRGIDDNKDQTYFLCQLNQKQLEK----VLFPIG 172

Query: 171 RCRREDIRSFLLQRNIS 187
              +  IR    + N+ 
Sbjct: 173 EYTKPQIREIAEKYNLK 189


>gi|255007776|ref|ZP_05279902.1| GMP synthase [Bacteroides fragilis 3_1_12]
 gi|313145481|ref|ZP_07807674.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           fragilis 3_1_12]
 gi|313134248|gb|EFR51608.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           fragilis 3_1_12]
          Length = 507

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 27/195 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKAQLGNDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAK 115
           R+     V +  D  C  L +     S K      G+    R+ +        +  E A 
Sbjct: 252 RKDEFKNVMH--DYECLGLNVIGVDASRKFFSELEGVTEPERKRKIIGKGFIDVFDEEAH 309

Query: 116 TI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLRC 172
            + +   +     + D +E++        +  G  +        +   +NL +  P    
Sbjct: 310 KLKDVKWLAQGTIYPDCIESL--------SITGTVIKSHHNVGGLPEKMNLKLCEPLRLL 361

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 362 FKDEVRRVGRELGMP 376


>gi|85707172|ref|ZP_01038259.1| hypothetical protein ROS217_16351 [Roseovarius sp. 217]
 gi|85668331|gb|EAQ23205.1| hypothetical protein ROS217_16351 [Roseovarius sp. 217]
          Length = 232

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I++  SGG DS+ L    H V ++     +    +S D+  R     EV Y +    RL 
Sbjct: 4  IVI-CSGGLDSVSLA---HKVAAEHELAGL----LSFDYGQRHV--KEVEYAAACARRLG 53

Query: 82 IAHSVVSWKN 91
          + H VV  + 
Sbjct: 54 VPHKVVDIRQ 63


>gi|282877536|ref|ZP_06286354.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella buccalis ATCC 35310]
 gi|281300360|gb|EFA92711.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella buccalis ATCC 35310]
          Length = 514

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S IES    +R  V    +++ +SGG DS      L+  +          + I VDH L
Sbjct: 198 SFIESTVESIRQQVGNDKVILGLSGGVDSSVCATLLNKAIGR------NLTCIFVDHGL 250


>gi|295401299|ref|ZP_06811271.1| exsB protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111881|ref|YP_003990197.1| exsB protein [Geobacillus sp. Y4.1MC1]
 gi|294976706|gb|EFG52312.1| exsB protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216982|gb|ADP75586.1| exsB protein [Geobacillus sp. Y4.1MC1]
          Length = 222

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  AL            +  A++ D+  R   + E+   + +   L
Sbjct: 8  VVV-FSGGQDSTTCLFWALKQFD--------EVEAVTFDYGQRH--RLEIEVAASIAKEL 56

Query: 81 RIAHSVVS 88
           I+H+V+ 
Sbjct: 57 GISHTVLD 64


>gi|212710851|ref|ZP_03318979.1| hypothetical protein PROVALCAL_01919 [Providencia alcalifaciens DSM
           30120]
 gi|212686548|gb|EEB46076.1| hypothetical protein PROVALCAL_01919 [Providencia alcalifaciens DSM
           30120]
          Length = 525

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 71/194 (36%), Gaps = 23/194 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE     ++  +   H+L+A+SGG DS    + LH  +  R       + + VD+ L R 
Sbjct: 214 IEDTVARLKEQIGDDHVLLALSGGVDSSVTALLLHRAIGKR------LTCVFVDNGLLRL 267

Query: 65  TAKDEVRYVSDVCS---RLRIAHSVVSWKNSKPQTGL---MAAAREARYALISEH----A 114
               E   V ++      L I H+    +      G+       ++  +  I       +
Sbjct: 268 N---EAEQVMEMFQGKFDLNIIHAKAEDRFMNALAGISDPEEKRKKIGHVFIEVFDEESS 324

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  N   +     + D +E+    + + +  K          +  D+ L +  P     +
Sbjct: 325 KLQNIKWLAQGTIYPDIIESAASATGKAHVIKS---HHNVGGLPEDMKLGLVEPLKELFK 381

Query: 175 EDIRSFLLQRNISW 188
           +++R   L+  + +
Sbjct: 382 DEVRKIGLELGLPY 395


>gi|290580496|ref|YP_003484888.1| putative GMP synthase [Streptococcus mutans NN2025]
 gi|254997395|dbj|BAH87996.1| putative GMP synthase [Streptococcus mutans NN2025]
          Length = 533

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 232 IREQVGNRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKGEGD--- 282

Query: 72  YVSDVCSRLR--IAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTIN 118
               V   L      +++    SK    L+A              E  Y    E +K   
Sbjct: 283 ---QVMEMLGGRFGLNIIRVDASKRFLDLLAGIDDPEKKRKIIGNEFVYVFDDEASKQKG 339

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 340 VDFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 393

Query: 179 SFLLQRN----ISWC 189
           +          I W 
Sbjct: 394 TLGTALGMPDEIVWR 408


>gi|218883790|ref|YP_002428172.1| GMP synthase [Desulfurococcus kamchatkensis 1221n]
 gi|218765406|gb|ACL10805.1| GMP synthase [Desulfurococcus kamchatkensis 1221n]
          Length = 523

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 20/166 (12%)

Query: 31  DSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLRIAHSVV-- 87
           DS    +    + +D+    +      VDH L RE    E   V     +L +   +V  
Sbjct: 238 DSTVTALIGKKLFNDKLIPVL------VDHGLLREG---ERELVVTSLEKLGLNPLIVDA 288

Query: 88  --SWKNSKPQTGLMAAAREAR----YALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              + +    +      R         + SE  +   A   +   T+ D +E+   R   
Sbjct: 289 GERFISKLEGSTDCEERRRVIGEEFARIFSEIIEKEGAEYFLQGTTYPDVIESGGTRKAA 348

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
              +    + G+ +   +   + I  P     ++++R       + 
Sbjct: 349 SVIKSHHNVGGLPE--WFRGRVKILEPLRFLYKDEVREIARLLGVP 392


>gi|114798727|ref|YP_759370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomonas neptunium ATCC 15444]
 gi|123323559|sp|Q0C4H3|MNMA_HYPNA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|114738901|gb|ABI77026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hyphomonas neptunium ATCC 15444]
          Length = 394

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 60/204 (29%), Gaps = 51/204 (25%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
            +   ++ A+SGG DS  +   L +   D     ++      DH             A  
Sbjct: 22  PHETRVVAAMSGGVDSSVVAAMLKAEGYDVIGITLQLY----DHG--AAIEKKGACCAGQ 75

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISE 112
           ++    +V   + I H V+ +++   +  +   A                   ++A +  
Sbjct: 76  DIHDARNVSDAIGIPHYVLDYESRFREQVMEDFADTYLSGSTPIPCIRCNQTVKFADLLA 135

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLN 162
            AK + A  + T H             +R    +G  L    D                 
Sbjct: 136 TAKELGADCLATGH-----------YIRRTDGPEGPELHRAQDASRDQSYFLFATTRAQL 184

Query: 163 LWISRPFLRCRREDIRSFLLQRNI 186
            ++  P     + ++R    +  +
Sbjct: 185 DFLRFPLGSLPKSEVRELAEKFAL 208


>gi|27262188|gb|AAN87375.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Heliobacillus mobilis]
          Length = 376

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 67/227 (29%), Gaps = 63/227 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIAL----------------HSVLSDRSFGKIKFSAISVDHCL 62
           P  ++VA+SGG DS      L                         G    SA+      
Sbjct: 2   PETVVVAMSGGVDSSVTAALLLEKGYNVIGVTLQIWPKDAPEGAEGGCCSLSAV------ 55

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT-----GLMAAA--------REARYAL 109
                ++ R V      L I H V+++++   +      G    A        R  R   
Sbjct: 56  -----EDARRV---AFTLGIPHYVMNFRDYFEEEVINYFGQEYLAGQTPNPCIRCNRVIK 107

Query: 110 ISEHAKT---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-- 164
                +    + A  + T H    ++E     ++R     G       D      N+   
Sbjct: 108 FEGLLQKSLALGADKVATGHYA--RIE---YDAERQRYRLGQAKDAKKDQSYVLFNMTQE 162

Query: 165 -ISR---PFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFER 201
            +SR   P     + +IR      N++    P +       D+ + R
Sbjct: 163 QLSRTMFPLGGFTKPEIREMARAYNLAVASKPDSQEICFIPDNDYRR 209


>gi|24379503|ref|NP_721458.1| GMP synthase [Streptococcus mutans UA159]
 gi|44887999|sp|Q8DU81|GUAA_STRMU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|24377443|gb|AAN58764.1|AE014945_1 putative GMP synthase [Streptococcus mutans UA159]
          Length = 517

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 216 IREQVGNRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKGEGD--- 266

Query: 72  YVSDVCSRLR--IAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTIN 118
               V   L      +++    SK    L+A              E  Y    E +K   
Sbjct: 267 ---QVMEMLGGRFGLNIIRVDASKRFLDLLAGIDDPEKKRKIIGNEFVYVFDDEASKQKG 323

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 324 VDFLAQGTLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 377

Query: 179 SFLLQRN----ISWC 189
           +          I W 
Sbjct: 378 TLGTALGMPDEIVWR 392


>gi|319941892|ref|ZP_08016213.1| GMP synthase [Sutterella wadsworthensis 3_1_45B]
 gi|319804545|gb|EFW01415.1| GMP synthase [Sutterella wadsworthensis 3_1_45B]
          Length = 521

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 67/185 (36%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +++ +SGG DS      +H  +  R       + + VD+  LR+  +++VR
Sbjct: 217 IRAEVGDEEVILGLSGGVDSSVTAALIHRAIGQR------LTCVFVDNGLLRKNEREQVR 270

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
                   + +   VV   +         S P+       RE       E AK  NA  +
Sbjct: 271 --ETFEKNMGLKLIVVDAIDRFMNALAGISDPEQKRKIIGREFVNVFQEEAAKIKNAKWL 328

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      +    K +        +   L+L +  P     ++++R   +
Sbjct: 329 AQGTIYPDVIES---AGAKTKKAKVIKSHHNVGGLPDTLHLKLLEPLRSLFKDEVRELGI 385

Query: 183 QRNIS 187
              + 
Sbjct: 386 ALGLP 390


>gi|237738505|ref|ZP_04568986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229420385|gb|EEO35432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 357

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 28/122 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I VA+SGG DS  +   L      + +  I  +  + +       +D       VC  L
Sbjct: 20  KIAVAMSGGVDSSTVAYILKK----QGYDLIGITMRTCN----PEDED----AKKVCEDL 67

Query: 81  RIAHSVVSWKNS---------------KPQTGLMAAARE-ARYALISEHAKTINATLIMT 124
            I H V+                               +  ++ ++ + A++  A  + T
Sbjct: 68  GIPHYVLDATKEFKTKVMDYFIEEYLQGKTPNPCMVCNKHIKFGMLIDFARSKGADFMAT 127

Query: 125 AH 126
            H
Sbjct: 128 GH 129


>gi|222481179|ref|YP_002567415.1| ExsB family protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454555|gb|ACM58818.1| ExsB family protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 195

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 28/128 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
           P  +L+ +SGG DS  L              +   + ++VD+  +  A  E++  + +  
Sbjct: 2   PESVLL-LSGGLDSATLAY----------THRPDLT-VTVDYG-QCCADAEIQASAQIAD 48

Query: 79  RLRIAHSVVSWK---------NSKPQTGLMAAAREARYA------LISEHAKTINATLIM 123
           +L + H V+              + +T L  A     Y       L++       A  ++
Sbjct: 49  QLNLEHEVIEVDCENLGAGTMAGQQETDLGDAPEWWPYRNQLVVTLVAMKVVRRGADRLL 108

Query: 124 TAHTFDDQ 131
                DDQ
Sbjct: 109 VGAVADDQ 116


>gi|195034678|ref|XP_001988949.1| GH10300 [Drosophila grimshawi]
 gi|193904949|gb|EDW03816.1| GH10300 [Drosophila grimshawi]
          Length = 693

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+   R+ 
Sbjct: 216 EECIRYIREKVGNNKVLLLVSGGVDSSVCAALL-----RRALHPSQIIAVHVDNGFMRKN 270

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
              E   V      + I   V  
Sbjct: 271 ---ESEQVERSLRDIGIELIVRK 290


>gi|167749316|ref|ZP_02421443.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702]
 gi|167657707|gb|EDS01837.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702]
          Length = 387

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 63/223 (28%), Gaps = 63/223 (28%)

Query: 7   ESVRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH----- 60
            +V + +R   +    + +A+SGG DS   L+ L     + S   +K       H     
Sbjct: 17  AAVNYNIRGHNIMAEKLAIAMSGGVDSSVALVLLKD-KYEVSGYTLKL------HDSRGT 69

Query: 61  ---CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA 102
               L   +  ++     + ++  + H ++  ++               S          
Sbjct: 70  DDSGL-CGSASDIEDAKAIAAKFGVPHYLLDMRDLFSDTVQKSFVQSYLSGRTPNPCVEC 128

Query: 103 RE-ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---- 157
            E  ++  + +  K      I T H              R   ++  G   +   I    
Sbjct: 129 NETIKFGALLDAVKKQGINHIATGH------------YVRSCYDEKSGRWLLKKAINADG 176

Query: 158 ---LYDLNLWISR-----------PFLRCRREDIRSFLLQRNI 186
                D +  + R           P     +++IR       +
Sbjct: 177 TSNAKDQSYVLYRLSQQQLAASVFPLGEMTKDEIRHIAADSGL 219


>gi|73668265|ref|YP_304280.1| hypothetical protein Mbar_A0722 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395427|gb|AAZ69700.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 272

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 43/195 (22%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +  IE ++  +++       ++A SGG DS  L      VL +++       A++++ 
Sbjct: 1   MAIEKIELIKEAIKARESA---VIAFSGGVDSATLAALAFEVLGEKAL------AVTIN- 50

Query: 61  CLRETA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALI 110
                +    K ++    +    + I H ++S+        S          ++A    +
Sbjct: 51  -----SPLFPKKQLETAVETACEIGIEHKILSFSQLSLPYFSANTLNRCYFCKKALLETL 105

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A+      ++                       G    G     + +    I  PF+
Sbjct: 106 LDFAEKAGYNAVLEGTN--------------SSEIHGENRPGY--RAVQEAGEKIYSPFV 149

Query: 171 --RCRREDIRSFLLQ 183
                +++IR    +
Sbjct: 150 EFNVTKDEIREVASK 164


>gi|295694944|ref|YP_003588182.1| GMP synthase, large subunit [Bacillus tusciae DSM 2912]
 gi|295410546|gb|ADG05038.1| GMP synthase, large subunit [Bacillus tusciae DSM 2912]
          Length = 530

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 60/201 (29%), Gaps = 27/201 (13%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E+V   +R  V    +L A+SGG DS    + +H  + DR       + + VDH
Sbjct: 218 MSSYAREAVEE-IRRQVGNGQVLCALSGGVDSAVAAVLVHRAVGDR------LTCVFVDH 270

Query: 61  C-LRETAKDEVRYVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALI 110
             LR+   D V           +    V               P+        E      
Sbjct: 271 GLLRKGEADRVM--EAFGRGFGMKIVRVDAGGRFLARLVGVRDPEQKRKIIGEEFIRVFE 328

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E  +      +     + D +E              +        +   ++  +  P  
Sbjct: 329 EEADRLGKFDFLAQGTLYTDIIE------SGTKTAATIKSHHNVGGLPERMSFRLIEPLN 382

Query: 171 RCRREDIRSFLLQRNISWCED 191
              ++++R+   +  I   ED
Sbjct: 383 TLFKDEVRALGTELGIP--ED 401


>gi|189039054|sp|A4ILN7|QUEC_GEOTN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
          Length = 221

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 57/199 (28%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS   L       ++         A++ D+  R   + E+   + +   L 
Sbjct: 7   VVV-FSGGQDSTTCLFWAKKQFAE-------VEAVTFDYGQRH--RREIEVAASIADELG 56

Query: 82  IAHSVVSW---------KNSKPQTGLMAA----------AREARY-ALISEHAKTINATL 121
           + H+V+             ++ +  +              R   + +  +  AK   A  
Sbjct: 57  VRHTVLDMSLLGQLAPNALTRGEIAIEQKEGELPTTFVDGRNLLFLSFAAVLAKQRGARH 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLR 171
           I+T        ET              G     D  +  LN+           I  P + 
Sbjct: 117 IVTG-----VCET-----------DFSGYPDCRDIFIKSLNVTLNLAMDYPFVIHTPLMW 160

Query: 172 CRREDIRSFLLQRN-ISWC 189
             + +      +   + + 
Sbjct: 161 LTKAETWKLADELGALEFV 179


>gi|86606329|ref|YP_475092.1| GMP synthase [Synechococcus sp. JA-3-3Ab]
 gi|86554871|gb|ABC99829.1| GMP synthase, glutamine-hydrolyzing [Synechococcus sp. JA-3-3Ab]
          Length = 538

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 22/194 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++R  VR+ V    +L+A+SGG DS  L   LH  + D      + + + +D    R+ 
Sbjct: 222 EAIRE-VRARVGDKRVLLALSGGVDSSTLAFLLHKAIGD------QLTCVFIDQGFMRK- 273

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
             +  R +     +  I    V  +          + P+        E       E  + 
Sbjct: 274 -DEPQRLLRLFQEQFHIPVHYVDGQERFLRQLQGVTDPEEKRKRIGAEFIRVFEEESQRL 332

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFLRCR 173
                +     + D +E+          E+             +  +L   +  P  +  
Sbjct: 333 GPFEYLAQGTLYPDVIESANTNVDPVTGERIAVKIKSHHNVGGLPENLRFKLVEPLRKLF 392

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 393 KDEVRQLARSLGLP 406


>gi|309364979|emb|CAP23621.2| hypothetical protein CBG_03001 [Caenorhabditis briggsae AF16]
          Length = 808

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +RS++    +LV VSGG DS      L     +R+ G  + +A+ +D
Sbjct: 331 IRSIIGDKKVLVMVSGGVDSAVCAALL-----NRALGPGRVTAVHID 372


>gi|238020666|ref|ZP_04601092.1| hypothetical protein GCWU000324_00555 [Kingella oralis ATCC 51147]
 gi|237867646|gb|EEP68652.1| hypothetical protein GCWU000324_00555 [Kingella oralis ATCC 51147]
          Length = 549

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR    DE +
Sbjct: 239 IREQVGNDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLR---LDEGK 289

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINA 119
            V       L +   VV    S            P+        E      +E  K   A
Sbjct: 290 NVMQMFAQNLGVK--VVHVDASAQFMAKLAGVTDPEQKRKIIGAEFIEVFDAEEKKLTQA 347

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++ L +  P     ++++R 
Sbjct: 348 KWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFKDEVRE 404

Query: 180 FLLQRNIS 187
             +   + 
Sbjct: 405 LGVALGLP 412


>gi|168182080|ref|ZP_02616744.1| GMP synthase (glutamine-hydrolyzing) [Clostridium botulinum Bf]
 gi|237796735|ref|YP_002864287.1| GMP synthase [Clostridium botulinum Ba4 str. 657]
 gi|259647673|sp|C3KUC5|GUAA_CLOB6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|182674773|gb|EDT86734.1| GMP synthase (glutamine-hydrolyzing) [Clostridium botulinum Bf]
 gi|229263393|gb|ACQ54426.1| GMP synthase [Clostridium botulinum Ba4 str. 657]
          Length = 510

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 24/187 (12%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            ++  V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V
Sbjct: 208 AIKEKVGNKKVICALSGGVDSSVAAVIVHKAIGK------QLTCIFVDHGLLRKDEGDQV 261

Query: 71  RYVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISEHAKTIN-ATL 121
             +     +  +    V+ ++       G+    R+ +        +  E AK +   + 
Sbjct: 262 EKIFK--DQFDMNLIRVNAQDRFLGKLKGVSDPERKRKIIGEEFIRVFEEEAKKLGDISF 319

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E              +        +  D+   +  P     ++++R+  
Sbjct: 320 LVQGTIYPDIVE------SGTNTSATIKSHHNVGGLPEDMEFKLIEPLRELFKDEVRAVG 373

Query: 182 LQRNISW 188
            +  I  
Sbjct: 374 EELGIPH 380


>gi|332993961|gb|AEF04016.1| putative regulator protein [Alteromonas sp. SN2]
          Length = 218

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          +++V  SGG DS      LH  L D         A+S D+  R   K E+ Y + VC  L
Sbjct: 4  NVVVIYSGGMDS---FTVLHKALRD----GKTVHALSFDYGQRH--KKELDYAAAVCKSL 54

Query: 81 RIAHSVVSWKN 91
           + H +V    
Sbjct: 55 NVPHKIVDISA 65


>gi|308050952|ref|YP_003914518.1| preQ(0) biosynthesis protein QueC [Ferrimonas balearica DSM 9799]
 gi|307633142|gb|ADN77444.1| preQ(0) biosynthesis protein QueC [Ferrimonas balearica DSM 9799]
          Length = 220

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 62/192 (32%), Gaps = 41/192 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++  SGG DS      LH V+++         AI+ D+  R     EV Y   VCS L 
Sbjct: 6   VVI-YSGGMDS---FTVLHKVITE----GYTPYAITFDYGQRH--DKEVEYAKVVCSELG 55

Query: 82  IAHSVVSWKNSKPQTGLMAAAR-------EARYA------------------LISEHAKT 116
           I H ++            +  R       E  YA                  L + +A +
Sbjct: 56  INHKIIDITAINQLISGSSLTRDSESDIPEGHYAEDNMKSTVVPNRNMILISLATGYAAS 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I A  +       D          R    + +  + M         + +  P+L   + +
Sbjct: 116 IGAGKVFYGAHSGDHA---IYPDCRPEFVEKINAATMIANYEP---IEVVSPYLYQSKIE 169

Query: 177 IRSFLLQRNISW 188
           I    L+  + +
Sbjct: 170 ILKDGLEMGLDY 181


>gi|289434353|ref|YP_003464225.1| GMP synthase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170597|emb|CBH27137.1| GMP synthase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 518

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+   D+V
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKGEADQV 269


>gi|255031007|ref|ZP_05302958.1| GMP synthase [Listeria monocytogenes LO28]
          Length = 118

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
          ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+   D+V
Sbjct: 14 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKGEADQV 66


>gi|255024903|ref|ZP_05296889.1| GMP synthase [Listeria monocytogenes FSL J1-208]
          Length = 179

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+   D+V
Sbjct: 49  IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKGEADQV 101


>gi|227890864|ref|ZP_04008669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ATCC 11741]
 gi|227867273|gb|EEJ74694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ATCC 11741]
          Length = 375

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         V       K      +V         ++ + V
Sbjct: 8   RVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDSGVCTV--------TEDYQDV 59

Query: 74  SDVCSRLRIAHSVVSW----------------KNSKPQTGLMAAAREARYALISEHAKTI 117
           + V S++ I +  V++                K+ +     +   +E ++    ++A +I
Sbjct: 60  AKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKDGRTPNPDIMCNKEVKFKAFLDYAMSI 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +A  I   H      D+      +R   D  ++   LS +    L      +  P    +
Sbjct: 120 DADYIAMGHYAQLRRDEDGRVHLLRGADDNKDQTYFLSQLSQEQLQK----VMFPIGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVRRIAEEAGLA 189


>gi|254994297|ref|ZP_05276487.1| GMP synthase [Listeria monocytogenes FSL J2-064]
          Length = 379

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH  LR+   D+V
Sbjct: 213 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGLLRKGEADQV 265


>gi|145593248|ref|YP_001157545.1| argininosuccinate synthase [Salinispora tropica CNB-440]
 gi|145302585|gb|ABP53167.1| Argininosuccinate synthase [Salinispora tropica CNB-440]
          Length = 408

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 29/186 (15%)

Query: 14  RSLVYPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           R+ + P HI++A SGG D S+ L+         +     + +A   +           R 
Sbjct: 4   RNTIAPQHIVLAFSGGLDTSVALVWL-------KERYHCRLTAFIANLGQGAELDTAARK 56

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              + +   +  + +  + ++           A Y        +I   LI  A      +
Sbjct: 57  AEKLGAD-EVRVADLRGEFAR-DYAFPMYRANALYEGQYLMGSSIGRPLIAAAQLR--VV 112

Query: 133 ETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRC----------RREDIRSFL 181
           E V             G +G   D I +++ L   RP +             R D+ ++ 
Sbjct: 113 EEV------GADAVAHGATGKGNDQIRFEMTLAALRPDIMVISPWREWDLSSRSDLLAYA 166

Query: 182 LQRNIS 187
            +  I 
Sbjct: 167 RRHGIE 172


>gi|225851037|ref|YP_002731271.1| tRNA-specific 2-thiouridylase MnmA [Persephonella marina EX-H1]
 gi|254811456|sp|C0QRH5|MNMA_PERMH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225646565|gb|ACO04751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Persephonella marina EX-H1]
          Length = 353

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 58/193 (30%), Gaps = 34/193 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DHCL--RETAKDEVRYVSDV 76
            + V +SGG DS    + L     D     +K S+I    D  +        + + V+  
Sbjct: 2   RVAVGMSGGVDSSVAALLLKEKGYDVIGVTLKLSSIVCSNDIQVCCSPQDIKDAKRVASY 61

Query: 77  CSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REA---RYALISEHAKTI 117
              L I H V+ W++                       +   RE    R A        +
Sbjct: 62  ---LGIEHYVIDWEDIFREKVINYFVEEYKKGKTPNPCSVCNREVKTGRLAKFVNIV--L 116

Query: 118 NATLIMTAHTFDDQLETVYMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            A    T H    ++E   +     +R    K      M   +  D+   +  P     +
Sbjct: 117 GADKFATGHYI--KIEDHPVYGKVIKRGSDIKKDQSYFMA-LLERDVLDLLIFPLSDLTK 173

Query: 175 EDIRSFLLQRNIS 187
           E++R       I 
Sbjct: 174 EEVRKIAEDYKIP 186


>gi|163749538|ref|ZP_02156785.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella benthica KT99]
 gi|161330648|gb|EDQ01585.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella benthica KT99]
          Length = 525

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  +    +++ +SGG DS  + + LH  + D      K + + VD+  L
Sbjct: 212 SIIEDAIAKLKQQIGDDEVILGLSGGVDSSVVAMLLHRAIGD------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V D       +    V+ +N         A  EA+  +I           
Sbjct: 266 RLN---EAEQVMDMFGDHFGLKIVHVTAENRFLDAMKGEADPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 SKKCANAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|301301190|ref|ZP_07207346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300214575|gb|ADJ78991.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus salivarius CECT
           5713]
 gi|300851189|gb|EFK78917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 375

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         V       K      +V         ++ + V
Sbjct: 8   RVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDSGVCTV--------TEDYQDV 59

Query: 74  SDVCSRLRIAHSVVSW----------------KNSKPQTGLMAAAREARYALISEHAKTI 117
           + V S++ I +  V++                KN +     +   +E ++    ++A +I
Sbjct: 60  AKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMSI 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +A  I   H      D+      +R   D  ++   LS +    L      +  P    +
Sbjct: 120 DADYIAMGHYAQLRRDEDGRVHLLRGADDNKDQTYFLSQLSQEQLQK----VMFPIGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVRRIAEEAGLA 189


>gi|90961839|ref|YP_535755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius UCC118]
 gi|122449023|sp|Q1WTT7|MNMA_LACS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|90821033|gb|ABD99672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus salivarius UCC118]
          Length = 375

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         V       K      +V         ++ + V
Sbjct: 8   RVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDSGVCTV--------TEDYQDV 59

Query: 74  SDVCSRLRIAHSVVSW----------------KNSKPQTGLMAAAREARYALISEHAKTI 117
           + V S++ I +  V++                KN +     +   +E ++    ++A +I
Sbjct: 60  AKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMSI 119

Query: 118 NATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +A  I   H      D+      +R   D  ++   LS +    L      +  P    +
Sbjct: 120 DADYIAMGHYAQLRRDEDGRVHLLRGADDNKDQTYFLSQLSQEQLQK----VMFPIGHLQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVRRIAEEAGLA 189


>gi|327537782|gb|EGF24487.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhodopirellula baltica WH47]
          Length = 506

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 66/186 (35%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS  +   L+  +        + S I VD+  LR+    E +
Sbjct: 202 IRKQVGNKRVICGLSGGVDSSVVAALLYKAI------GPQLSCILVDNGLLRKN---EQQ 252

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISE----HAKTINATL 121
            V  +  +  +    +V  ++                R   +A I       AK  +A  
Sbjct: 253 IVLEEFSNHFKTDLHIVEAEDRFLADLAGIDEPQEKRRRIGHAFIECFKDEAAKIEDAHF 312

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + +D     + L      +  +L   +  P     ++++R   
Sbjct: 313 LAQGTLYPDVIES---GADKDGPAATIKLHHNVGGLPEELGFELIEPLRDLFKDEVRRLG 369

Query: 182 LQRNIS 187
           L+  + 
Sbjct: 370 LELGLP 375


>gi|304383964|ref|ZP_07366420.1| GMP synthase [Prevotella marshii DSM 16973]
 gi|304334856|gb|EFM01130.1| GMP synthase [Prevotella marshii DSM 16973]
          Length = 514

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 33/198 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    ++  +    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 198 SYIETTVEELKQQIGNDRVILGLSGGVDSSVCATLLNRAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALIS 111
           R+       Y   + +   +  +VV    SK           P+       R+      +
Sbjct: 252 RKN-----EYAKVMEAYRGLGLNVVGIDASKKFFTDLRGVTDPEEKRKIIGRDFVEVFNA 306

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPF 169
           E  K  +A  +     + D++E++        +  GM +        +  ++ L +  P 
Sbjct: 307 EAKKITDAKWLAQGTIYPDRIESL--------SITGMVIKSHHNVGGLPKEMKLRLCEPL 358

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 359 QWLFKDEVRRVGQELGMP 376


>gi|322392267|ref|ZP_08065728.1| GMP synthase [Streptococcus peroris ATCC 700780]
 gi|321144802|gb|EFX40202.1| GMP synthase [Streptococcus peroris ATCC 700780]
          Length = 520

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEKKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDNIVWR 395


>gi|312866569|ref|ZP_07726784.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus parasanguinis F0405]
 gi|311097868|gb|EFQ56097.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus parasanguinis F0405]
          Length = 521

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 220 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 273

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 274 EMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEKKRKIIGNEFVYVFDDEASKL 325

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 326 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 379

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 380 VRALGTELGMPDHIVWR 396


>gi|299067487|emb|CBJ38686.1| GMP synthetase [Ralstonia solanacearum CMR15]
          Length = 547

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 27/200 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 213 MRDHIEEAVKSIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 266

Query: 62  L-RETAKDEVRYVSDVCS-RLRIAHSVVSWKNSKPQTG-------LMAAA----REARYA 108
           L R     E + V D+   RL     VV    S+   G         A      RE    
Sbjct: 267 LLRLN---EGQMVLDMFEGRLH--AKVVHVDASEQFLGHLTGVTDPEAKRKIIGREFVEV 321

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             +E  K  NA  +     + D +E+      +      +        +   L L +  P
Sbjct: 322 FQAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEP 378

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R   +   +  
Sbjct: 379 LRDLFKDEVRELGVALGLPP 398


>gi|296112235|ref|YP_003626173.1| GMP synthase [Moraxella catarrhalis RH4]
 gi|295919929|gb|ADG60280.1| GMP synthase [Moraxella catarrhalis RH4]
          Length = 519

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 215 LKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLNEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+   +       +A             RE       E  K     
Sbjct: 269 --QMFAENMGI--RVIRADSEARFLNALAGVSDPEAKRKIIGREFIEVFSEEARKLDGVK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 325 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 381

Query: 181 LLQRNISW 188
            +   I  
Sbjct: 382 GVALGIPH 389


>gi|241668495|ref|ZP_04756073.1| GMP synthase [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877029|ref|ZP_05249739.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843050|gb|EET21464.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 516

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 212 IKKQVGSDRVILGLSGGVDSSVVAAILHEAIGD------QLTCIFVDTGLLRLNEGDQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALI-----SEHAKTINATLI 122
            V      + I    V+ K    ++    G     R+    L       E AK  NA  +
Sbjct: 266 EV--FAEHMDINVIRVNAKNRFLDALKGIGDPEEKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+             +        +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIES---AGNSQSKAHVIKSHHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|228474151|ref|ZP_04058888.1| GMP synthase [Staphylococcus hominis SK119]
 gi|314935155|ref|ZP_07842508.1| GMP synthase [Staphylococcus hominis subsp. hominis C80]
 gi|228271846|gb|EEK13183.1| GMP synthase [Staphylococcus hominis SK119]
 gi|313656490|gb|EFS20229.1| GMP synthase [Staphylococcus hominis subsp. hominis C80]
          Length = 513

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 26/182 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYV-S 74
           V    +L A+SGG DS  + + LH  + D      + + I VDH  LR+   D    V  
Sbjct: 216 VGHRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD---MVME 266

Query: 75  DVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  +    V+ K          S P+        E  Y    E AK  +   +   
Sbjct: 267 QFGEGFDMNIIRVNAKERFMEKLKGVSDPEKKRKIIGNEFVYVFDDEAAKLTDVDFLAQG 326

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E            + +        +  D+   +  P     ++++R+  ++  
Sbjct: 327 TLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALGIELG 380

Query: 186 IS 187
           I 
Sbjct: 381 IP 382


>gi|169632892|ref|YP_001706628.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii SDF]
 gi|229486328|sp|B0VUD6|MNMA_ACIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169151684|emb|CAP00474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii]
          Length = 377

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 42/198 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--------DEVRY 72
            ++V +SGG DS      L           +K           E           +++  
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNW---------EEDDGTEYCTAMEDLAD 54

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
              V  ++ I     ++                AA R          E ++    +HA T
Sbjct: 55  AQAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMT 114

Query: 117 INATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  I T H    + ET        Y    R           +      ++N  +  P 
Sbjct: 115 LGADFIATGHYAR-RAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLF-PV 172

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R    + +++
Sbjct: 173 GEIEKPEVRRIAEELDLA 190


>gi|167627943|ref|YP_001678443.1| GMP synthase [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|226738458|sp|B0U0B2|GUAA_FRAP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|167597944|gb|ABZ87942.1| GMP synthase (glutamine-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 516

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 65/186 (34%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 212 IKKQVGSDRVILGLSGGVDSSVVAAILHEAIGD------QLTCIFVDTGLLRLNEGDQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREARYALI-----SEHAKTINATLI 122
            V      + I    V+ K    ++    G     R+    L       E AK  NA  +
Sbjct: 266 EV--FAEHMDINVIRVNAKNRFLDALKGIGDPEEKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+             +        +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIES---AGNSQSKAHVIKSHHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|18977994|ref|NP_579351.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus
           DSM 3638]
 gi|18893773|gb|AAL81746.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM
           3638]
          Length = 261

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 61/202 (30%), Gaps = 39/202 (19%)

Query: 1   MFLSPIESVRFF-VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M    I+ VR F  ++ +    +LV  SGG DS   L  L            K SA++  
Sbjct: 1   MMEQVIKDVREFGEKTGIINKRVLVLYSGGIDSSVTLYVLKK-------AGFKVSALTFF 53

Query: 60  HCLRETAKDEVRYVS---DVCSRLRIAHSVVSW------KNSKPQTGLMAAAREARYALI 110
           H            +         L + H ++        +    +  +    ++      
Sbjct: 54  HKWS-----WPEVLRWGMKFTKSLNVEHYLIDITDALLRRAVGRKGPICIHCKKVMLENA 108

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI----LYDLNLWIS 166
              A   N + +      +D++              G  L      I    +  + + I 
Sbjct: 109 KWFALNNNFSYLAKGDNANDKI-------------IGTLLDQCPGDIRLCEIPKIGIPIF 155

Query: 167 RPFLRCRREDIRSFLLQRNISW 188
           RP ++ + + I+    +  I  
Sbjct: 156 RPLVKYKADFIQKLADEAKIKP 177


>gi|261337316|ref|ZP_05965200.1| GMP synthase [Bifidobacterium gallicum DSM 20093]
 gi|270277687|gb|EFA23541.1| GMP synthase [Bifidobacterium gallicum DSM 20093]
          Length = 520

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS      +H  + D      + + + VDH  LR+    EV 
Sbjct: 209 IREQVGDAQVICGLSGGVDSAVAAALVHKAIGD------QLTCVFVDHGLLRKG---EVE 259

Query: 72  YVS-DVCSRLRIAHSVV----SWKNSKPQTGLMAAARE------------ARYALISEHA 114
            V  D  +   I    V     + ++          R+            A+  +I E  
Sbjct: 260 QVKHDFVAATGIKLIAVDASEEFLSALKGVSEPEKKRKIIGEKFIRTFEQAQRQVIEEAG 319

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  DL   +  P     
Sbjct: 320 AQGKEVKFLVQGTLYPDVVES-----GGGDGASNIKSHHNVGGLPDDLKFELIEPLRTLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 375 KDEVRAIGTELGLP 388


>gi|194365696|ref|YP_002028306.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
           R551-3]
 gi|229487423|sp|B4SIN4|MNMA_STRM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|194348500|gb|ACF51623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas maltophilia R551-3]
          Length = 380

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 39/193 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVCS 78
            ++V VSGG DS      L       +   ++  A   D        A+D+ R    VC 
Sbjct: 5   RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWA---DDG-SGECRAEDDRRDAVAVCG 60

Query: 79  RLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTINATLI 122
            L I           W+          AA           RE ++    + A+ + A  I
Sbjct: 61  LLGIPFHFRDFSNEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120

Query: 123 MTAH--------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            T H                + +R      ++   L  +    L         P     +
Sbjct: 121 ATGHYARVAQRGHQ-----WLLLRGADRSKDQSYFLHQLGQQQLAAT----LFPIGDLEK 171

Query: 175 EDIRSFLLQRNIS 187
            D+R      ++ 
Sbjct: 172 TDLRRIARDVSLP 184


>gi|170761419|ref|YP_001788611.1| GMP synthase [Clostridium botulinum A3 str. Loch Maree]
 gi|226738425|sp|B1L1J7|GUAA_CLOBM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|169408408|gb|ACA56819.1| GMP synthase [Clostridium botulinum A3 str. Loch Maree]
          Length = 510

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 26/188 (13%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            ++  V    ++ A+SGG DS    + +H  +        + + I VDH  LR   KDE 
Sbjct: 208 AIKEKVGDKKVICALSGGVDSSVAAVIVHKAIGK------QLTCIFVDHGLLR---KDEG 258

Query: 71  RYVSDVCS---RLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAKTIN-AT 120
             V  +      + +       +      G+    R+ +        +  E AK +   +
Sbjct: 259 DQVEKIFKDQFEMNLIRVNAQDRFLGKLKGVSDPERKRKIIGEEFIRVFEEEAKKLGDIS 318

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            ++    + D +E              +        +  D+   +  P     ++++R+ 
Sbjct: 319 FLVQGTIYPDIVE------SGTNTSATIKSHHNVGGLPEDMEFKLIEPLRELFKDEVRAV 372

Query: 181 LLQRNISW 188
             +  I  
Sbjct: 373 GEELGIPH 380


>gi|170725915|ref|YP_001759941.1| GMP synthase [Shewanella woodyi ATCC 51908]
 gi|226739737|sp|B1KLC1|GUAA_SHEWM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|169811262|gb|ACA85846.1| GMP synthase, large subunit [Shewanella woodyi ATCC 51908]
          Length = 525

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  +    +++ +SGG DS  + + LH  + D+       + + VD+  L
Sbjct: 212 SIIEDAIERLKQQIGDDEVILGLSGGVDSSVVAMLLHRAIGDK------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E + V D       +    V  +N         A  EA+  +I           
Sbjct: 266 RLN---EAQQVMDMFGDHFGLNIVHVDAENRFLDAMAGEADPEAKRKIIGHVFVDIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K +NA  +     + D +E+             +        +  D+ + +  P    
Sbjct: 323 SKKCVNAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|333004970|gb|EGK24490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri VA-6]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|307553134|gb|ADN45909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ABU 83972]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|296119260|ref|ZP_06837828.1| GMP synthase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967652|gb|EFG80909.1| GMP synthase [Corynebacterium ammoniagenes DSM 20306]
          Length = 512

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I+ VR     +      +  +SGG DS     A+ + L  R+ G  + + + VDH  LR 
Sbjct: 198 IDDVR---EQIGPEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRA 248

Query: 65  TAKDEVR--YVSDVCSRLRIAHS----------VVSWKNSKPQTGLMAAAREAR--YALI 110
             +++V   +V+   ++L  AH           V+  +  +   G        R     +
Sbjct: 249 GEREQVEKDFVASTGAKLITAHEADAFLAKLSGVIDPEAKRKAIGAEFIRSFERAVAQAL 308

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E  +      ++    + D +E+             +        +  D+   +  P  
Sbjct: 309 EESPEGSTVDFLVQGTLYPDVVES-----GGGDGTANIKSHHNVGGLPDDVEFELVEPLR 363

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 364 LLFKDEVRAVGRELGLP 380


>gi|215486387|ref|YP_002328818.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264459|emb|CAS08822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|161984923|ref|YP_408327.2| tRNA-specific 2-thiouridylase MnmA [Shigella boydii Sb227]
 gi|205821943|sp|Q31ZK9|MNMA_SHIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|332094391|gb|EGI99440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella boydii 3594-74]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|197117160|ref|YP_002137587.1| GMP synthase [Geobacter bemidjiensis Bem]
 gi|197086520|gb|ACH37791.1| guanosine monophosphate synthase [Geobacter bemidjiensis Bem]
          Length = 516

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 24/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE+    +R  V    +L A+SGG DS  + + +H  + D      +   + V++  L
Sbjct: 204 NFIETELASIREKVGTGKVLCALSGGVDSAVVAVLIHKAIGD------QLHCVFVNNGLL 257

Query: 63  RETAKDEVRYVSDVCSRL---RIAHSVVSWK-------NSKPQTGLMAAAREARYALISE 112
           R+    E   V ++ ++     +AH   + +        S P+        E  Y    E
Sbjct: 258 RKG---EADKVVNLFTKHFKINLAHVDAADRFLGMLEGVSDPEQKRKIIGNEFIYLFEEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+V  +      +    + G+ +     +NL +  P    
Sbjct: 315 AKKLGQVDYLAQGTLYPDVIESVSTKGPSAVIKSHHNVGGLPEK----MNLKLLEPVREL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 371 FKDEVRLLGKELGMP 385


>gi|114793688|pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Initial Trna Binding State
 gi|114793689|pdb|2DER|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Initial Trna Binding State
 gi|114793692|pdb|2DET|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Pre-Reaction State
 gi|114793694|pdb|2DEU|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Adenylated Intermediate State
 gi|114793695|pdb|2DEU|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And
           Trna-Glu In The Adenylated Intermediate State
          Length = 380

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 18  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 67

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 68  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 127

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 128 AEDLGADYIATGH 140


>gi|110805161|ref|YP_688681.1| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 5 str. 8401]
 gi|161485922|ref|NP_707062.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str. 301]
 gi|161486505|ref|NP_836851.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str.
           2457T]
 gi|123342960|sp|Q0T5N9|MNMA_SHIF8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205828969|sp|Q83LF7|MNMA_SHIFL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110614709|gb|ABF03376.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|313650389|gb|EFS14796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri 2a str. 2457T]
 gi|332758322|gb|EGJ88645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri 4343-70]
 gi|332761100|gb|EGJ91387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri K-671]
 gi|332767378|gb|EGJ97572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri 2930-71]
 gi|333005353|gb|EGK24871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri K-218]
 gi|333019439|gb|EGK38722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri K-304]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|110641310|ref|YP_669040.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 536]
 gi|191173062|ref|ZP_03034595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli F11]
 gi|218558015|ref|YP_002390928.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli S88]
 gi|218689086|ref|YP_002397298.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ED1a]
 gi|306814017|ref|ZP_07448190.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101]
 gi|331657197|ref|ZP_08358159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA206]
 gi|123344119|sp|Q0TIU0|MNMA_ECOL5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822319|sp|A1AA27|MNMA_ECOK1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205822366|sp|Q1RD20|MNMA_ECOUT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110342902|gb|ABG69139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 536]
 gi|190906607|gb|EDV66213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli F11]
 gi|218364784|emb|CAR02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli S88]
 gi|218426650|emb|CAR07478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ED1a]
 gi|294491197|gb|ADE89953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli IHE3034]
 gi|305852654|gb|EFM53102.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101]
 gi|307627395|gb|ADN71699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UM146]
 gi|323187621|gb|EFZ72928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli RN587/1]
 gi|323953180|gb|EGB49046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H252]
 gi|323957959|gb|EGB53671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H263]
 gi|331055445|gb|EGI27454.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA206]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|89107979|ref|AP_001759.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli str. K-12 substr. W3110]
 gi|90111218|ref|NP_415651.4| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157156703|ref|YP_001462402.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli E24377A]
 gi|157160657|ref|YP_001457975.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli HS]
 gi|170020474|ref|YP_001725428.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ATCC 8739]
 gi|170080784|ref|YP_001730104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|191168327|ref|ZP_03030119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B7A]
 gi|193066260|ref|ZP_03047312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E22]
 gi|193071716|ref|ZP_03052616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E110019]
 gi|194436948|ref|ZP_03069047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 101-1]
 gi|209918390|ref|YP_002292474.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SE11]
 gi|218553711|ref|YP_002386624.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI1]
 gi|218694667|ref|YP_002402334.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 55989]
 gi|238900387|ref|YP_002926183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BW2952]
 gi|253773843|ref|YP_003036674.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161240|ref|YP_003044348.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli B str. REL606]
 gi|256018611|ref|ZP_05432476.1| tRNA-specific 2-thiouridylase MnmA [Shigella sp. D9]
 gi|256023169|ref|ZP_05437034.1| tRNA-specific 2-thiouridylase MnmA [Escherichia sp. 4_1_40B]
 gi|260843449|ref|YP_003221227.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|260854815|ref|YP_003228706.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|260867562|ref|YP_003233964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|293433421|ref|ZP_06661849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B088]
 gi|297518453|ref|ZP_06936839.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli OP50]
 gi|301029558|ref|ZP_07192636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 196-1]
 gi|307137768|ref|ZP_07497124.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli H736]
 gi|307310090|ref|ZP_07589740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli W]
 gi|331667534|ref|ZP_08368398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA271]
 gi|8039808|sp|P25745|MNMA_ECOLI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816868|sp|A7ZZ88|MNMA_ECOHS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816869|sp|B1XA43|MNMA_ECODH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816870|sp|A7ZKS3|MNMA_ECO24 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816881|sp|B1IUD4|MNMA_ECOLC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|4062697|dbj|BAA35955.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli str. K12 substr. W3110]
 gi|87081837|gb|AAC74217.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157066337|gb|ABV05592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli HS]
 gi|157078733|gb|ABV18441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E24377A]
 gi|169755402|gb|ACA78101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ATCC 8739]
 gi|169888619|gb|ACB02326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|190901622|gb|EDV61379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B7A]
 gi|192926109|gb|EDV80751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E22]
 gi|192954978|gb|EDV85481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E110019]
 gi|194423931|gb|EDX39919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 101-1]
 gi|209911649|dbj|BAG76723.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli SE11]
 gi|218351399|emb|CAU97105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 55989]
 gi|218360479|emb|CAQ98033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli IAI1]
 gi|238863704|gb|ACR65702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BW2952]
 gi|242376935|emb|CAQ31656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|253324887|gb|ACT29489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973141|gb|ACT38812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B str. REL606]
 gi|253977355|gb|ACT43025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|257753464|dbj|BAI24966.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|257758596|dbj|BAI30093.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|257763918|dbj|BAI35413.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|260449728|gb|ACX40150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli DH1]
 gi|291324240|gb|EFE63662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B088]
 gi|299877553|gb|EFI85764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 196-1]
 gi|306909808|gb|EFN40302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli W]
 gi|309701457|emb|CBJ00761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli ETEC H10407]
 gi|315060410|gb|ADT74737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli W]
 gi|315616009|gb|EFU96635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 3431]
 gi|320175639|gb|EFW50731.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Shigella dysenteriae CDC 74-1112]
 gi|320184390|gb|EFW59201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Shigella flexneri CDC 796-83]
 gi|320201029|gb|EFW75613.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Escherichia coli EC4100B]
 gi|323153179|gb|EFZ39443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli EPECa14]
 gi|323179331|gb|EFZ64901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1180]
 gi|323185683|gb|EFZ71044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 1357]
 gi|323379030|gb|ADX51298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli KO11]
 gi|323937873|gb|EGB34137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E1520]
 gi|323942603|gb|EGB38770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E482]
 gi|323962732|gb|EGB58310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H489]
 gi|323973277|gb|EGB68466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA007]
 gi|324117296|gb|EGC11203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli E1167]
 gi|331065119|gb|EGI37014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA271]
 gi|332342735|gb|AEE56069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU
           [Escherichia coli UMNK88]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|315222977|ref|ZP_07864856.1| GMP synthase protein [Streptococcus anginosus F0211]
 gi|315187927|gb|EFU21663.1| GMP synthase protein [Streptococcus anginosus F0211]
          Length = 519

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 218 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 271

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 272 DSLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 323

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 324 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFKLIEPLNTLYKDE 377

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 378 VRALGTELGMPDEIVWR 394


>gi|331682639|ref|ZP_08383258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H299]
 gi|331080270|gb|EGI51449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H299]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|293390912|ref|ZP_06635246.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951446|gb|EFE01565.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 383

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 58/210 (27%), Gaps = 49/210 (23%)

Query: 10  RFFVRSLVYPA--HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           +   + L   A   I+  +SGG DS      L           +K               
Sbjct: 12  KLTAQQLAENATKKIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EED 61

Query: 68  DEVRYV---------SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR--------- 103
           D+  Y            VC +L I    +++                 A R         
Sbjct: 62  DDTDYCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCN 121

Query: 104 -EARY-ALISEHAKTINATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
            E ++ A +   A+ + A  I T H       DD  +   +R   +  ++   L  +   
Sbjct: 122 KEIKFKAFLEYAAEDLGANYIATGHYVRRRGADDNAQ--LLRGLDNNKDQSYFLYTLSKI 179

Query: 157 ILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            +         P     +  +R+   +  +
Sbjct: 180 QV----GQSLFPVGNIEKPIVRAIAEELGL 205


>gi|254672472|emb|CBA05920.1| GMP synthase [Neisseria meningitidis alpha275]
          Length = 543

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 23/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
               E + V D     L +    V  +            P+        E      +E  
Sbjct: 258 N---EGKMVMDMFARNLGVKVIHVDAEGQFMAKLAGVTDPEKKRKIIGAEFIEVFDAEEK 314

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  NA  +     + D +E+      +      +        +  ++ L +  P     +
Sbjct: 315 KLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDLFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R   +   + 
Sbjct: 372 DEVRELGVALGLP 384


>gi|218700344|ref|YP_002407973.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI39]
 gi|218704607|ref|YP_002412126.1| tRNA -specific 2-thiouridylase MnmA [Escherichia coli UMN026]
 gi|218370330|emb|CAR18133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli IAI39]
 gi|218431704|emb|CAR12586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli UMN026]
 gi|284920959|emb|CBG34022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 042]
 gi|330910947|gb|EGH39457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli AA86]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|170682526|ref|YP_001744044.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SMS-3-5]
 gi|218549144|ref|YP_002382935.1| tRNA-specific 2-thiouridylase MnmA [Escherichia fergusonii ATCC
           35469]
 gi|205816880|sp|B1LI10|MNMA_ECOSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|170520244|gb|ACB18422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli SMS-3-5]
 gi|218356685|emb|CAQ89312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia fergusonii ATCC 35469]
 gi|323967072|gb|EGB62498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M863]
 gi|323976496|gb|EGB71584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TW10509]
 gi|324113924|gb|EGC07898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia fergusonii B253]
 gi|325497565|gb|EGC95424.1| orf, hypothetical protein [Escherichia fergusonii ECD227]
 gi|327253837|gb|EGE65466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli STEC_7v]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|167574454|ref|ZP_02367328.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia oklahomensis C6786]
          Length = 539

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVALIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVTDPEAKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|161986546|ref|YP_310111.2| tRNA-specific 2-thiouridylase MnmA [Shigella sonnei Ss046]
 gi|205829110|sp|Q3Z2Y6|MNMA_SHISS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|161950103|ref|YP_403605.2| tRNA-specific 2-thiouridylase MnmA [Shigella dysenteriae Sd197]
 gi|309788203|ref|ZP_07682809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1617]
 gi|205821961|sp|Q32EZ1|MNMA_SHIDS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|308924055|gb|EFP69556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1617]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|300816836|ref|ZP_07097056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 107-1]
 gi|300821083|ref|ZP_07101232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 119-7]
 gi|300906948|ref|ZP_07124620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 84-1]
 gi|300917906|ref|ZP_07134539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 115-1]
 gi|300922663|ref|ZP_07138760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 182-1]
 gi|300928309|ref|ZP_07143845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 187-1]
 gi|300949484|ref|ZP_07163481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 116-1]
 gi|300955539|ref|ZP_07167901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 175-1]
 gi|301306077|ref|ZP_07212155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 124-1]
 gi|301328492|ref|ZP_07221558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 78-1]
 gi|301644551|ref|ZP_07244544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 146-1]
 gi|309796520|ref|ZP_07690927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 145-7]
 gi|331641677|ref|ZP_08342812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H736]
 gi|331652184|ref|ZP_08353203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M718]
 gi|331676926|ref|ZP_08377622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H591]
 gi|332279679|ref|ZP_08392092.1| conserved hypothetical protein [Shigella sp. D9]
 gi|300317578|gb|EFJ67362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 175-1]
 gi|300401295|gb|EFJ84833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 84-1]
 gi|300414896|gb|EFJ98206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 115-1]
 gi|300421012|gb|EFK04323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 182-1]
 gi|300451104|gb|EFK14724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 116-1]
 gi|300463695|gb|EFK27188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 187-1]
 gi|300526382|gb|EFK47451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 119-7]
 gi|300530610|gb|EFK51672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 107-1]
 gi|300838649|gb|EFK66409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 124-1]
 gi|300845099|gb|EFK72859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 78-1]
 gi|301077133|gb|EFK91939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 146-1]
 gi|308119832|gb|EFO57094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 145-7]
 gi|315135765|dbj|BAJ42924.1| trmU [Escherichia coli DH1]
 gi|315254893|gb|EFU34861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 85-1]
 gi|324017533|gb|EGB86752.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 117-3]
 gi|331038475|gb|EGI10695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H736]
 gi|331050462|gb|EGI22520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M718]
 gi|331075615|gb|EGI46913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H591]
 gi|332102031|gb|EGJ05377.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 383

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|81245791|gb|ABB66499.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 383

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|4580030|gb|AAD24213.1| unknown [Pseudomonas putida GB-1]
          Length = 436

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           VR+ V  A++L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 132 VRAQVGSANVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLHEG-DQV 184

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAA----------REARYALISEHAKTIN 118
           +    +    + +   V+     K     L   A          R       +E +K  N
Sbjct: 185 MAMFKE---NMGVK--VIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDIFDAEASKLEN 239

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E+      +      +        +  ++NL +  P     ++++R
Sbjct: 240 IQFLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVR 296

Query: 179 SFLLQRNISW 188
              L+  + +
Sbjct: 297 KIGLELGLPY 306


>gi|38703944|ref|NP_309632.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           Sakai]
 gi|161367616|ref|NP_287347.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7
           EDL933]
 gi|168749736|ref|ZP_02774758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168756472|ref|ZP_02781479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168762550|ref|ZP_02787557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771001|ref|ZP_02796008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776054|ref|ZP_02801061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168782470|ref|ZP_02807477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168787608|ref|ZP_02812615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|168800455|ref|ZP_02825462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|195938765|ref|ZP_03084147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808537|ref|ZP_03250874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814775|ref|ZP_03255954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208822542|ref|ZP_03262861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209397379|ref|YP_002270050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217328487|ref|ZP_03444569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254792593|ref|YP_003077430.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227234|ref|ZP_05941515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258759|ref|ZP_05951292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291282168|ref|YP_003498986.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Escherichia coli O55:H7 str. CB9615]
 gi|24638314|sp|Q8X735|MNMA_ECO57 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187768490|gb|EDU32334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188016000|gb|EDU54122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000055|gb|EDU69041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189356337|gb|EDU74756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189360141|gb|EDU78560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189367117|gb|EDU85533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189372405|gb|EDU90821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|189377259|gb|EDU95675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|208728338|gb|EDZ77939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208731423|gb|EDZ80111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208738027|gb|EDZ85710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209158779|gb|ACI36212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217318914|gb|EEC27340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254591993|gb|ACT71354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290762041|gb|ADD56002.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Escherichia coli O55:H7 str. CB9615]
 gi|320187860|gb|EFW62530.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Escherichia coli O157:H7 str. EC1212]
 gi|320637601|gb|EFX07401.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           G5101]
 gi|320643161|gb|EFX12362.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str.
           493-89]
 gi|320648098|gb|EFX16774.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str. H
           2687]
 gi|320653931|gb|EFX22005.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320659411|gb|EFX26980.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320664548|gb|EFX31699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326339412|gb|EGD63224.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str.
           1044]
 gi|326341465|gb|EGD65256.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Escherichia coli O157:H7 str. 1125]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|188494195|ref|ZP_03001465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 53638]
 gi|188489394|gb|EDU64497.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 53638]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|187730842|ref|YP_001879941.1| tRNA-specific 2-thiouridylase MnmA [Shigella boydii CDC 3083-94]
 gi|205816914|sp|B2TZ86|MNMA_SHIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187427834|gb|ACD07108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella boydii CDC 3083-94]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWNNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|326403958|ref|YP_004284040.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301]
 gi|325050820|dbj|BAJ81158.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301]
          Length = 345

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 26/128 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET---AKDEVRYVS 74
            ++VA+SGG DS  +   +H    +     ++      DH     R+    A  ++    
Sbjct: 2   RVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLY----DHGAATSRKGACCAGQDIHDAR 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA---REAR-------------YALISEHAKTIN 118
           +V  RL IAH V+  + +     +   A    E R             +  +   A+ + 
Sbjct: 58  NVADRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLG 117

Query: 119 ATLIMTAH 126
           A  + T H
Sbjct: 118 AEALATGH 125


>gi|293409499|ref|ZP_06653075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B354]
 gi|291469967|gb|EFF12451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B354]
          Length = 395

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 33  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 82

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 83  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 142

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 143 AEDLGADYIATGH 155


>gi|293414424|ref|ZP_06657073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B185]
 gi|291434482|gb|EFF07455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli B185]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|227886510|ref|ZP_04004315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 83972]
 gi|300975599|ref|ZP_07173078.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 45-1]
 gi|301051077|ref|ZP_07197911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 185-1]
 gi|227836714|gb|EEJ47180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli 83972]
 gi|300297249|gb|EFJ53634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 185-1]
 gi|300410262|gb|EFJ93800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 45-1]
 gi|315293099|gb|EFU52451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 153-1]
          Length = 383

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|222032885|emb|CAP75625.1| hypothetical protein LF82_1359 [Escherichia coli LF82]
 gi|312945695|gb|ADR26522.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|91210289|ref|YP_540275.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UTI89]
 gi|117623318|ref|YP_852231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli APEC O1]
 gi|237706881|ref|ZP_04537362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia sp. 3_2_53FAA]
 gi|300982382|ref|ZP_07176080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 200-1]
 gi|91071863|gb|ABE06744.1| probable ATPase YcfB [Escherichia coli UTI89]
 gi|115512442|gb|ABJ00517.1| putative ATPase [Escherichia coli APEC O1]
 gi|226898091|gb|EEH84350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia sp. 3_2_53FAA]
 gi|300307219|gb|EFJ61739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 200-1]
 gi|315287470|gb|EFU46881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 110-3]
 gi|315296602|gb|EFU55897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 16-3]
 gi|324013226|gb|EGB82445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 60-1]
          Length = 383

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|24051447|gb|AAN42769.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30040928|gb|AAP16658.1| hypothetical protein S1235 [Shigella flexneri 2a str. 2457T]
 gi|281600566|gb|ADA73550.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Shigella flexneri 2002017]
          Length = 383

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|12514787|gb|AAG55959.1|AE005329_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361069|dbj|BAB35028.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209772838|gb|ACI84731.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772840|gb|ACI84732.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772842|gb|ACI84733.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772844|gb|ACI84734.1| hypothetical protein ECs1605 [Escherichia coli]
 gi|209772846|gb|ACI84735.1| hypothetical protein ECs1605 [Escherichia coli]
          Length = 383

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|194433661|ref|ZP_03065937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1012]
 gi|194418090|gb|EDX34183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 1012]
 gi|320179167|gb|EFW54125.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Shigella boydii ATCC 9905]
 gi|332089265|gb|EGI94371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella boydii 5216-82]
 gi|332092905|gb|EGI97973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella dysenteriae 155-74]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|324005950|gb|EGB75169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 57-2]
          Length = 383

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|300173520|ref|YP_003772686.1| GMP synthase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887899|emb|CBL91867.1| GMP synthase [glutamine-hydrolyzing] [Leuconostoc gasicomitatum LMG
           18811]
          Length = 516

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 68/188 (36%), Gaps = 28/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R +V    +L+ +SGG DS  + + LH  + D      + ++I VDH  LR+    E +
Sbjct: 215 IREVVGDKKVLLGLSGGVDSSVVGVLLHKAIGD------QLTSIFVDHGLLRKN---EAK 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA---AREARY-------ALISEHAKTI-NAT 120
            V ++  + +   +++     +     +A      + R         + ++ A  +    
Sbjct: 266 QVMEMMGK-QFGLNIIKVDAQERFLSKLAGIKDPEQKRKIIGNEFIQVFNDEATKLDGIE 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E            + +        +  DL   +  P     ++++R  
Sbjct: 325 FLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDLQFKLIEPLNTLFKDEVREL 378

Query: 181 LLQRNISW 188
               N+  
Sbjct: 379 GEALNMPH 386


>gi|293404489|ref|ZP_06648483.1| trmU [Escherichia coli FVEC1412]
 gi|298380264|ref|ZP_06989869.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302]
 gi|300896838|ref|ZP_07115333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 198-1]
 gi|300938705|ref|ZP_07153429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 21-1]
 gi|301024581|ref|ZP_07188253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 69-1]
 gi|331646392|ref|ZP_08347495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M605]
 gi|281178243|dbj|BAI54573.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Escherichia coli SE15]
 gi|291429075|gb|EFF02100.1| trmU [Escherichia coli FVEC1412]
 gi|298279962|gb|EFI21470.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302]
 gi|300359320|gb|EFJ75190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 198-1]
 gi|300396506|gb|EFJ80044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 69-1]
 gi|300456350|gb|EFK19843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli MS 21-1]
 gi|331045144|gb|EGI17271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli M605]
          Length = 383

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|81241404|gb|ABB62114.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
          Length = 383

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|73855169|gb|AAZ87876.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 383

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLGADYIATGH 143


>gi|13638101|sp|O52831|GUAA_CORAM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|6705971|dbj|BAA89456.1| GMP synthetase [Corynebacterium ammoniagenes]
          Length = 524

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 68/197 (34%), Gaps = 29/197 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I+ VR     +      +  +SGG DS     A+ + L  R+ G  + + + VDH  LR 
Sbjct: 210 IDDVRA---QIGPEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRA 260

Query: 65  TAKDEVR--YVSDVCSRLRIAHS----------VVSWKNSKPQTGLMAAAREAR--YALI 110
             +++V   +V+   ++L  AH           V   +  +   G        R     +
Sbjct: 261 GEREQVEKDFVASTGAKLITAHEADAFLSKLAGVTDPEAKRKAIGAEFIRSFERAVAQAL 320

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E  +      ++    + D +E+             +        +  D+   +  P  
Sbjct: 321 EESPEDSTVDFLVQGTLYPDVVES-----GGGDGTANIKSHHNVGGLPDDVEFELVEPLR 375

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 376 LLFKDEVRAVGRELGLP 392


>gi|148260759|ref|YP_001234886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidiphilium cryptum JF-5]
 gi|205811039|sp|A5FZD5|MNMA_ACICJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146402440|gb|ABQ30967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidiphilium cryptum JF-5]
          Length = 345

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 26/128 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RET---AKDEVRYVS 74
            ++VA+SGG DS  +   +H    +     ++      DH     R+    A  ++    
Sbjct: 2   RVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLY----DHGAATGRKGACCAGQDIHDAR 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA---REAR-------------YALISEHAKTIN 118
           +V  RL IAH V+  + +     +   A    E R             +  +   A+ + 
Sbjct: 58  NVADRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLG 117

Query: 119 ATLIMTAH 126
           A  + T H
Sbjct: 118 AEALATGH 125


>gi|238749636|ref|ZP_04611141.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380]
 gi|238712291|gb|EEQ04504.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380]
          Length = 373

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 51/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L       +   +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW----------EEDDGEEYCSAATDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    L         P  
Sbjct: 117 AEDLGADYIATGHYVRRQDVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q  +
Sbjct: 173 ELEKPEVRRIAEQLEL 188


>gi|148992672|ref|ZP_01822340.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP9-BS68]
 gi|168483941|ref|ZP_02708893.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC1873-00]
 gi|182684403|ref|YP_001836150.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae CGSP14]
 gi|303254394|ref|ZP_07340501.1| GMP synthase [Streptococcus pneumoniae BS455]
 gi|303259041|ref|ZP_07345020.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae SP-BS293]
 gi|303261721|ref|ZP_07347668.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|303264394|ref|ZP_07350314.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS397]
 gi|303267538|ref|ZP_07353386.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS457]
 gi|303269320|ref|ZP_07355093.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS458]
 gi|226739754|sp|B2IQR1|GUAA_STRPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|147928689|gb|EDK79703.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP9-BS68]
 gi|172042797|gb|EDT50843.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC1873-00]
 gi|182629737|gb|ACB90685.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae CGSP14]
 gi|301802175|emb|CBW34920.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pneumoniae
           INV200]
 gi|302598641|gb|EFL65680.1| GMP synthase [Streptococcus pneumoniae BS455]
 gi|302637301|gb|EFL67789.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae SP14-BS292]
 gi|302639984|gb|EFL70440.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae SP-BS293]
 gi|302641150|gb|EFL71524.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS458]
 gi|302642939|gb|EFL73238.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS457]
 gi|302646206|gb|EFL76433.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae BS397]
 gi|332201883|gb|EGJ15953.1| GMP synthase [Streptococcus pneumoniae GA47368]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRKTVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|120612021|ref|YP_971699.1| GMP synthase [Acidovorax citrulli AAC00-1]
 gi|120590485|gb|ABM33925.1| GMP synthase (glutamine-hydrolyzing) [Acidovorax citrulli AAC00-1]
          Length = 541

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 65/217 (29%), Gaps = 52/217 (23%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I      +R+ V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 210 MKDHIAEAVESIRAQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 263

Query: 62  L----------------------RETAKDEVRYVSDVC------SRLRI--AHSVVSWKN 91
           L                      R  A +   ++ ++        + +I     V  +K 
Sbjct: 264 LLRLNEGDMVMDMFVGKLHAKVVRVDASE--LFLRELAGVSDPEQKRKIIGRLFVDVFKA 321

Query: 92  SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
              +     A+R           K   AT +     + D +E+      +      +   
Sbjct: 322 EAAKLTASGASR-----------KEKGATFLAQGTIYPDVIES---GGAKSKKAVTIKSH 367

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
                +   L L +  P     ++++R   +   +  
Sbjct: 368 HNVGGLPEQLGLKLLEPLRDLFKDEVRELGVALGLPH 404


>gi|88799912|ref|ZP_01115484.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Reinekea sp. MED297]
 gi|88777343|gb|EAR08546.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Reinekea sp. MED297]
          Length = 525

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR+   D+V 
Sbjct: 221 VREQVGDRNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRKDEGDQVM 274

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAAREARYALI----SEHAKTINAT 120
             +     + +   V+                      +   +  I     +     +  
Sbjct: 275 --AMFAENMGV--RVIRADAEDRFLNALKGVSDPEEKRKIIGHQFIEVFDEQAHSIQDVD 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  ++ L +  P     ++++R  
Sbjct: 331 FLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPEEMKLSLVEPLRELFKDEVRKI 387

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 388 GLELGLPY 395


>gi|333030074|ref|ZP_08458135.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides coprosuis DSM
           18011]
 gi|332740671|gb|EGJ71153.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides coprosuis DSM
           18011]
          Length = 507

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +E     ++  +    +++A+SGG DS    + L+  +          + + VDH L
Sbjct: 198 SFVEHTVAELKKQLGDDKVVLALSGGVDSSVAAVLLNKAIGK------NLTCVFVDHGL 250


>gi|332874746|ref|ZP_08442616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii 6014059]
 gi|332737007|gb|EGJ67964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii 6014059]
          Length = 381

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 58/197 (29%), Gaps = 40/197 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 8   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V  ++ I     ++                AA R          E ++    +HA T+
Sbjct: 60  QAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTL 119

Query: 118 NATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H    + ET        Y    R   +       +      ++N  +  P  
Sbjct: 120 GADFIATGHYAR-RAETAYNSKGEAYAPLLRGLDKNKDQTYFLHAVHGREINKTLF-PVG 177

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    + +++
Sbjct: 178 EIEKPEVRRIAEELDLA 194


>gi|306829399|ref|ZP_07462589.1| GMP synthase [Streptococcus mitis ATCC 6249]
 gi|304428485|gb|EFM31575.1| GMP synthase [Streptococcus mitis ATCC 6249]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 42/198 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
                                 +L  I         S P+        E  Y    E +K
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKLAGI---------SDPEQKRKIIGNEFVYVFDDEASK 323

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +   +     + D +E            + +        +  D+   +  P     ++
Sbjct: 324 LKDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKD 377

Query: 176 DIRSFLLQRN----ISWC 189
           ++R+   +      I W 
Sbjct: 378 EVRALGTELGMPDHIVWR 395


>gi|171692935|ref|XP_001911392.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946416|emb|CAP73217.1| unnamed protein product [Podospora anserina S mat+]
          Length = 518

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 33/201 (16%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R LV P A ++ AVSGG DS      +   + DR      F A+ VD+  +R     E 
Sbjct: 200 IRKLVGPKAQVIGAVSGGVDSTVAARLMTEAIGDR------FHAVLVDNGVMRLN---EC 250

Query: 71  RYVSDVCSR-LRIAHSVVSWKN---SKPQTGLMAAARE----------------ARYALI 110
           + V +   + L I  +V+   +   S+ +      A+                       
Sbjct: 251 QQVKETLEKHLGINLTVIDGADLFLSRLKGLTEPEAKRKVIGSTFIDLFEEEAIRIEKAA 310

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                       +    + D +E++  +      +    + G+   ++    L +  P  
Sbjct: 311 ENTPNAGKVEYFLQGTLYPDVIESLSFKGPSATIKTHHNVGGLPARMMNGQGLKLIEPLR 370

Query: 171 RCRREDIRSFLLQRNISWCED 191
              ++++R F  Q  I   ED
Sbjct: 371 ELFKDEVREFGRQLGIH--ED 389


>gi|167563152|ref|ZP_02356068.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia oklahomensis EO147]
          Length = 539

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVALIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVTDPEAKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|326561747|gb|EGE12082.1| GMP synthase [Moraxella catarrhalis 7169]
          Length = 519

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 215 LKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLNEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+   +       +A             RE       E  K     
Sbjct: 269 --QMFAENMGI--RVIRADSEARFLNALAGVSDPEAKRKIIGREFIEVFSEEARKLDGVK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 325 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 381

Query: 181 LLQRNISW 188
            +   I  
Sbjct: 382 GVALGIPH 389


>gi|190574280|ref|YP_001972125.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia
           K279a]
 gi|205828975|sp|B2FQX2|MNMA_STRMK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|190012202|emb|CAQ45825.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stenotrophomonas maltophilia K279a]
          Length = 380

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 54/202 (26%), Gaps = 57/202 (28%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            ++V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L I           W+          AA           RE ++    + 
Sbjct: 52  RRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAH--------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           A+ + A  I T H                + +R      ++   L  +    L       
Sbjct: 112 ARELGAERIATGHYARVTQRGHQ-----WLLLRGADRSKDQSYFLHQLGQEQLAAT---- 162

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     + D+R      ++ 
Sbjct: 163 LFPIGDLEKTDLRRIARDVSLP 184


>gi|75909219|ref|YP_323515.1| hypothetical protein Ava_3010 [Anabaena variabilis ATCC 29413]
 gi|75702944|gb|ABA22620.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 276

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 40/199 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E ++     +      L+A SGG DS  +    + VL DR+   +  +A+    
Sbjct: 2   MLTEKLEQLKALFTEMEQA---LIAYSGGVDSTLVAKIAYDVLGDRA---LAVTAV---- 51

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEH 113
               +   +E+       + + I H VV                     +   +  +   
Sbjct: 52  --SPSLLPEELEDAKIQAATIGIPHKVVQTHEMDNPNYTSNPVNRCYFCKSELHDTLKPL 109

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           A  ++   ++     DD                   L      I          P   + 
Sbjct: 110 AVEMDYPYVVDGVNADD-------------------LHDYRPGIQAAKERGARSPLAEVG 150

Query: 172 CRREDIRSFLLQRNISWCE 190
             + ++R    Q  + W E
Sbjct: 151 VTKLEVRQLSQQLGLPWWE 169


>gi|330817413|ref|YP_004361118.1| GMP synthase, large subunit [Burkholderia gladioli BSR3]
 gi|327369806|gb|AEA61162.1| GMP synthase, large subunit [Burkholderia gladioli BSR3]
          Length = 539

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 25/199 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVALIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGQMVLDMFQG-RLHAKVVHVDASEQFLGHLAGVTDPEAKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            SE  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QSEAKKLSNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNISW 188
               ++++R   +   +  
Sbjct: 372 RDLFKDEVRELGVALGLPP 390


>gi|297530834|ref|YP_003672109.1| exsB protein [Geobacillus sp. C56-T3]
 gi|297254086|gb|ADI27532.1| exsB protein [Geobacillus sp. C56-T3]
          Length = 223

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 56/194 (28%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS   L       + + FG+++  A++ D+  R   + E+     +   L 
Sbjct: 9   VVV-FSGGQDSTTCLF-----WAKKQFGEVE--AVTFDYGQRH--RREIDVAQAIADELG 58

Query: 82  IAHSVVSWKNSKPQTGLMAAAREAR--------------------YALISEHAKTINATL 121
           + H+V+               R+                       +  +  AK   A  
Sbjct: 59  VRHTVLDLSLLGQLAPNALTRRDIAIEQKEGELPTTFVDGRNLLFLSFAAVFAKQRGARH 118

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLR 171
           I+T        ET              G     D  +  LN+           I  P + 
Sbjct: 119 IVTG-----VCET-----------DFSGYPDCRDVFIKSLNVTLNLAMDYEFVIHTPLMW 162

Query: 172 CRREDIRSFLLQRN 185
             + +      +  
Sbjct: 163 LTKAETWKLADELG 176


>gi|269218863|ref|ZP_06162717.1| GMP synthase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211974|gb|EEZ78314.1| GMP synthase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 522

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 31/194 (15%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            +R  V  A ++ A+SGG DS        +     +    + +   +DH  LR   +++V
Sbjct: 210 AIRRRVGGAQVICALSGGVDSS------VAAALVHAAVGDQLTCFFIDHGLLRAGEREQV 263

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHA 114
               D    + I    V     + ++        A R             A+  LI++  
Sbjct: 264 E--RDYAEGMGIRVVAVDESQRFLDALNGVSDPEAKRKIIGREFIRSFEAAQARLIADIG 321

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +   T   D +E+             +        +  D+   +  P     
Sbjct: 322 AEGGEVKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDMAFELIEPLRALF 376

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 377 KDEVRAVGRELGVP 390


>gi|146307422|ref|YP_001187887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas mendocina ymp]
 gi|205816890|sp|A4XUY9|MNMA_PSEMY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145575623|gb|ABP85155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudomonas mendocina ymp]
          Length = 370

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 35/137 (25%)

Query: 15  SLVYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------- 65
                  ++V +SGG DS    LL+       +  F K             E        
Sbjct: 2   QAPSTQRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMK----------NWDEDDGTEYCT 51

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYAL 109
           A D++     VC R+ I     +     W N          A           RE ++  
Sbjct: 52  AMDDLADAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKA 111

Query: 110 ISEHAKTINATLIMTAH 126
             ++A ++ A LI T H
Sbjct: 112 FLDYALSLGADLIATGH 128


>gi|16330497|ref|NP_441225.1| hypothetical protein slr1717 [Synechocystis sp. PCC 6803]
 gi|2829609|sp|P73846|Y1717_SYNY3 RecName: Full=Uncharacterized protein slr1717
 gi|1652988|dbj|BAA17905.1| slr1717 [Synechocystis sp. PCC 6803]
          Length = 268

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 36/197 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S +E++R F   L      L+A SGG DS  +    + VL       +  +A+    
Sbjct: 1   MLESKLENLRQFFGELDRA---LIAYSGGVDSTLVAKVAYDVL---GQNAVAITAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEH 113
               +   +E+         + IAH +V          +          +   +  +   
Sbjct: 51  --SPSLLPEELEDAQAQAQWIGIAHELVQTNEMANPNYTANPENRCYFCKSELHDTLQPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  +    ++     DD      +R  R          G+           ++   L+  
Sbjct: 109 ALALGYNYVIDGVNGDD------LRDYR---------PGIQAAKERGGRSPLAE--LQIS 151

Query: 174 REDIRSFLLQRNISWCE 190
           + ++R       + W +
Sbjct: 152 KLEVRQISQLLGLPWWD 168


>gi|317129079|ref|YP_004095361.1| exsB protein [Bacillus cellulosilyticus DSM 2522]
 gi|315474027|gb|ADU30630.1| exsB protein [Bacillus cellulosilyticus DSM 2522]
          Length = 218

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            ++V  SGG DS   L  AL            +  A++ D+  R +  +E++   ++ S 
Sbjct: 5   KVIVVFSGGQDSTTCLFWALKKYD--------EVEAVTFDYHQRHS--EEIQVAKEITSE 54

Query: 80  LRIAHSVVS-----------------WKNSKPQTGLMAA---AREARYALISEH-AKTIN 118
           L++ H ++                          GL +     R   +   +   A+ I 
Sbjct: 55  LKVKHHILDMSLLNQLAPSALTREEIVVKDGEAGGLPSTFVPGRNLIFLSFATILARQIG 114

Query: 119 ATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           A  I+T        ET +      RD   K + +S        D    I  P +   + +
Sbjct: 115 AKHIVTG-----VCETDFSGYPDCRDVFIKSLNVSLNLSM---DDQFVIHTPLMWLDKSE 166

Query: 177 IRSFLLQ-RNISWCEDPS 193
                     + +  D +
Sbjct: 167 TWKLADDLHALQYVRDKT 184


>gi|281200695|gb|EFA74913.1| cytosolic thiouridylase subunit 2 [Polysphondylium pallidum PN500]
          Length = 484

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 74/237 (31%), Gaps = 52/237 (21%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV 58
           F + I   R   R L       V++SGG  SM +L  +   + +   R+    K  AI +
Sbjct: 59  FKNNISKSRSDKREL---ETFAVSLSGGPSSMVMLDLIDQCIGENVKRAKMFFKVHAIHI 115

Query: 59  DH----CLRETA---KDE--------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR 103
           D      L   +     E         + + ++CS  ++  ++V  +N           R
Sbjct: 116 DQSVLRGLNGNSNSNDSEDNNTGLAIQKQLEEICSSYKVPLTIVPLENIYGDANETREQR 175

Query: 104 E-----------------------ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQ 140
                                    R  L+ E A  +    I+   + +       +R  
Sbjct: 176 RQQLVEVFEQMESNNTSKEDLLEHFRAQLVYETAHKLGLGRILNGSSSNRLA----IRLL 231

Query: 141 RDYAEKGMGLSGMCDTILYDLNL---WISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                KG G S   +T L D +     +  P      ++I  +     +     PSN
Sbjct: 232 -SSTSKGRGNSVPNETNLLDYHRTSTTVCHPMRDFLLKEIAIYHRYLGLQDLTVPSN 287


>gi|300770183|ref|ZP_07080062.1| possible argininosuccinate synthase [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762659|gb|EFK59476.1| possible argininosuccinate synthase [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 394

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 52/193 (26%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +++A SGG D S   +     +        ++  ++ V+      + +E+  +     
Sbjct: 2   KKVVLAFSGGLDTSFCCIYLTRDL-------GLEVHSVIVNTG--GFSAEELATIEKRAY 52

Query: 79  RLRIA-HSVVSWKNSKPQTGLM-----------------AAAREARYALISEHAKTINAT 120
            L +  H+VV    +  +  +                  +A R  +   I+ +AK I A 
Sbjct: 53  ELGVKSHAVVDETENYYRDSIKYLIFGNVLKNATYPLSVSAERVCQATAIANYAKKIGAE 112

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRRE 175
            +  AH                    G G   +   ++++     + I  P   L+  RE
Sbjct: 113 CV--AH-----------------GSTGAGNDQVRFDMIFNTLIPGVEIITPIRDLKLSRE 153

Query: 176 DIRSFLLQRNISW 188
               +L +  + +
Sbjct: 154 AEIEYLSKHGVEY 166


>gi|227538644|ref|ZP_03968693.1| possible argininosuccinate synthase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241563|gb|EEI91578.1| possible argininosuccinate synthase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 394

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 52/193 (26%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +++A SGG D S   +     +        ++  ++ V+      + +E+  +     
Sbjct: 2   KKVVLAFSGGLDTSFCCIYLTRDL-------GLEVHSVIVNTG--GFSAEELATIEKRAY 52

Query: 79  RLRIA-HSVVSWKNSKPQTGLM-----------------AAAREARYALISEHAKTINAT 120
            L +  H+VV    +  +  +                  +A R  +   I+ +AK I A 
Sbjct: 53  ELGVKSHAVVDETENYYRDSIKYLIFGNVLKNATYPLSVSAERVCQATAIANYAKKIGAE 112

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRRE 175
            +  AH                    G G   +   ++++     + I  P   L+  RE
Sbjct: 113 CV--AH-----------------GSTGAGNDQVRFDMIFNTLIPGVEIITPIRDLKLSRE 153

Query: 176 DIRSFLLQRNISW 188
               +L +  + +
Sbjct: 154 AEIEYLSKHGVEY 166


>gi|167043534|gb|ABZ08230.1| putative GMP synthase C terminal domain protein [uncultured marine
           microorganism HF4000_APKG2J17]
          Length = 537

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +++ +SGG DS      LH  + +      + + + VD  L RE   D+V 
Sbjct: 233 IREQVGAGQVVLGLSGGVDSSVTAALLHEAIGE------QLTCVFVDTGLMREGEGDQV- 285

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I        +         + P+                E AK  +A  +
Sbjct: 286 -VELFRDHYNIPLIHRDAGDLFLDKLDGVTDPEEKRKIIGSTFIDVFEEEAAKVGDAEFL 344

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 345 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKLKLVEPLRELFKDEVRALGR 401

Query: 183 QRNIS 187
           +  + 
Sbjct: 402 ELGLP 406


>gi|157415511|ref|YP_001482767.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|226738412|sp|A8FMV3|GUAA_CAMJ8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157386475|gb|ABV52790.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748153|gb|ADN91423.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932397|gb|EFV11340.1| GMP synthase [Campylobacter jejuni subsp. jejuni 327]
          Length = 511

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 72/187 (38%), Gaps = 27/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGSDKVLCAVSGGVDSSVVAALLASAIKE------QVIVVFVDNGLLRSGEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARY-------ALISEHAKTI-NAT 120
           ++    + L I    +S   S+     +A  R   + R         +  E AK   +  
Sbjct: 263 FMFK--NTLGIDL--ISIDASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVK 318

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+  + + +               +   +NL +  P     ++++R+ 
Sbjct: 319 YLAQGTLYTDIIESSVVGASKTIKS-----HHNVGGLPEKMNLKLIEPLKEIFKDEVRAL 373

Query: 181 LLQRNIS 187
            L+  +S
Sbjct: 374 GLELGLS 380


>gi|119512578|ref|ZP_01631655.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nodularia spumigena CCY9414]
 gi|119462778|gb|EAW43738.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nodularia spumigena CCY9414]
          Length = 539

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 28/197 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC----L 62
           E++R  +R+ V    +L+A+SGG DS  L   L+  + +      + + + +D      L
Sbjct: 224 EAIRE-IRARVGDKRVLLALSGGVDSSTLAFLLYKAIGE------QLTCVFIDQGFMRKL 276

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHA 114
                   R +     +  I    V  ++      +  T      R   +       E +
Sbjct: 277 EPE-----RLLKLFKEQFHIPVEYVMARDRFLNMIEGITDPEEKRRRIGHEFIQVFEETS 331

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFL 170
           K +     +     + D +E+          E+             +  DL   +  P  
Sbjct: 332 KRLGHFDYLAQGTLYPDVIESADTNVDPQTGERVAVKIKSHHNVGGLPKDLRFKLVEPLR 391

Query: 171 RCRREDIRSFLLQRNIS 187
           +  ++++R       + 
Sbjct: 392 KLFKDEVRKVGRSIGLP 408


>gi|92114562|ref|YP_574490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chromohalobacter salexigens DSM 3043]
 gi|122419524|sp|Q1QUR7|MNMA_CHRSD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91797652|gb|ABE59791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chromohalobacter salexigens DSM 3043]
          Length = 384

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 46/197 (23%)

Query: 21  HILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
            ++V +SGG DS    L +       +  F K             E        AK+++ 
Sbjct: 17  KVIVGMSGGVDSSVTALTLLEQGYAVEGLFMK----------NWDEDDGTEYCTAKEDLA 66

Query: 72  YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAK 115
               VC  L I     +     W N          A           RE ++ +  E+A+
Sbjct: 67  DAQAVCDTLGITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLEYAE 126

Query: 116 TINATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A  I T H       D       ++      ++   L  + +  +         P  
Sbjct: 127 MLGAEKIATGHYVRQGWRDGHC--RLLKGLDANKDQSYFLHAVPEVAIART----LFPVG 180

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R+   +  ++
Sbjct: 181 EMEKSEVRAIAERHGLT 197


>gi|87162110|ref|YP_494273.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87128084|gb|ABD22598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|298694901|gb|ADI98123.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA
           [Staphylococcus aureus subsp. aureus ED133]
          Length = 361

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 61/189 (32%), Gaps = 43/189 (22%)

Query: 27  SGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           SGG DS      L         +         +    +        A ++   V +VC++
Sbjct: 2   SGGVDSSVTAHVLKEQGYDVIGIFMKNWDDTDENGVCT--------ATEDYNDVIEVCNQ 53

Query: 80  LRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTINATLIM 123
           + I +  V+++     K  T  +   ++ R             +    +HA  + A  + 
Sbjct: 54  IGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVA 113

Query: 124 TAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T H        D  +E   +R   +  ++   L+ +    L      +  P     + ++
Sbjct: 114 TGHYARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSK----VMFPIGDIEKSEV 167

Query: 178 RSFLLQRNI 186
           R    ++ +
Sbjct: 168 RRIAEEQGL 176


>gi|116619734|ref|YP_821890.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122255775|sp|Q02BG1|MNMA_SOLUE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116222896|gb|ABJ81605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 371

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 41/203 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIAL-----------HSVLSDRSFGKIKFSAISVDHCLRETA 66
               I VA+SGG DS  +   L             + + R   ++     +     R  +
Sbjct: 2   PEQPIAVAMSGGVDSSVVAAMLVREGRTVVGMTMQLWNQRRLPELAVEGATTG---RCCS 58

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAARE----------ARYALI 110
            D+V     V  ++ I + VV+++        KP      A R            ++   
Sbjct: 59  LDDVYDARRVAEQVGIPYYVVNFEEQFEEHVVKPFVDEYLAGRTPIPCTLCNNYIKFDRF 118

Query: 111 SEHAKTINATLIMTAHTFD---DQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            E A ++ A  + T H      D+  T     +R+  D  ++   L G+    L      
Sbjct: 119 LEMADSVGAYHMATGHYARIRHDEA-TGRYQLLRAVDDSKDQTYFLFGLTQAQLART--- 174

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
              P     + ++R      +++
Sbjct: 175 -LFPLGELNKPEVRDMARSMDLA 196


>gi|288803674|ref|ZP_06409104.1| GMP synthase [Prevotella melaninogenica D18]
 gi|288333914|gb|EFC72359.1| GMP synthase [Prevotella melaninogenica D18]
          Length = 514

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +R  V    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFVESAVQEIREQVGNDRVILGLSGGVDSSVCAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|260912184|ref|ZP_05918738.1| transcription regulator ExsB [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633711|gb|EEX51847.1| transcription regulator ExsB [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 217

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 64/204 (31%), Gaps = 58/204 (28%)

Query: 19  PAHILVAVSGGSDSMGLLI------AL---HSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
              ++V VSGG DS+ LL       AL       S+ +  ++  +A+             
Sbjct: 2   KDSVIV-VSGGMDSITLLYEKKDEIALGISFDYGSNHNHNELPLAALH------------ 48

Query: 70  VRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAARE----------------AR---- 106
                  C RL IAH V+           + L + A                   R    
Sbjct: 49  -------CQRLGIAHVVIPLGFMHQYFKSSLLESGANIPDGSYDEDNMKSTVVPFRNGIM 101

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            A+ +  A++   T ++ A+   D   T+Y     D   + +             N+ + 
Sbjct: 102 LAVAAGIAESNGLTKVLIANHGGDH--TIY----PDCRPEFIAAMDAAVKAGTFANVHVV 155

Query: 167 RPFLRCRREDIRSFLLQRNISWCE 190
            P+    + DI        I + E
Sbjct: 156 APYTNISKADIARKGSFLGIDYAE 179


>gi|260655135|ref|ZP_05860623.1| PP-loop family protein [Jonquetella anthropi E3_33 E1]
 gi|260630057|gb|EEX48251.1| PP-loop family protein [Jonquetella anthropi E3_33 E1]
          Length = 271

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-ISVDHCLRETAKDEVRYVSDVCSRLR 81
           +V++SGG DS  +L  L  ++ + S   + F +             DE      +CS   
Sbjct: 28  VVSLSGGVDSSCVLALLAGLMPEGSLWAVNFRSFFHF--------PDEQERCVKMCSDFG 79

Query: 82  IAH------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +         + S +  +      A  +  R   +   A+ + A +I+     DD
Sbjct: 80  VPLLSLPGPELTSDEVRQNVPRRCALCKSLRLERLQAEAQELGA-VIVDGTNADD 133


>gi|302345658|ref|YP_003814011.1| GMP synthase (glutamine-hydrolyzing) [Prevotella melaninogenica
           ATCC 25845]
 gi|302149063|gb|ADK95325.1| GMP synthase (glutamine-hydrolyzing) [Prevotella melaninogenica
           ATCC 25845]
          Length = 514

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +R  V    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFVESAVQEIREQVGNDRVILGLSGGVDSSVCAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|326571824|gb|EGE21830.1| GMP synthase [Moraxella catarrhalis BC7]
          Length = 519

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 215 LKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLNEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+   +       +A             RE       E  K     
Sbjct: 269 --QMFAENMGI--CVIRADSEARFLNALAGVSDPEAKRKIIGREFIEVFSEEARKLDGVK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 325 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 381

Query: 181 LLQRNISW 188
            +   I  
Sbjct: 382 GVALGIPH 389


>gi|323351585|ref|ZP_08087239.1| GMP synthase [Streptococcus sanguinis VMC66]
 gi|322122071|gb|EFX93797.1| GMP synthase [Streptococcus sanguinis VMC66]
 gi|324991167|gb|EGC23101.1| GMP synthase [Streptococcus sanguinis SK353]
 gi|325687446|gb|EGD29467.1| GMP synthase [Streptococcus sanguinis SK72]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + +      +   I VDH  LR+   D+  
Sbjct: 219 IRQTVGDKKVLLGLSGGVDSSVVGVLLQKAIGN------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDEIVWR 395


>gi|20807693|ref|NP_622864.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Thermoanaerobacter tengcongensis MB4]
 gi|24638309|sp|Q8RAH7|MNMA1_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|20516242|gb|AAM24468.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Thermoanaerobacter tengcongensis MB4]
          Length = 364

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 49/205 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRETAKDEVRYV------ 73
            ++V +SGG DS      L           +      VD +     A+D+ +        
Sbjct: 6   RVVVGMSGGVDSSVTAYLLKE--QGFEVIGVTMRVW-VDPYG---KARDDDKSCCSLKAI 59

Query: 74  ---SDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHA 114
                V   L I H  V+                              R  ++  + E A
Sbjct: 60  HDAKKVAEILGIPHYTVNLSEVFYDKIVKYFIDEYLKGRTPNPCVFCNRFIKFGDLLEKA 119

Query: 115 KTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-- 167
             + A  I T H       +D+        +R   +KG+        +LY L     +  
Sbjct: 120 HELGAYYIATGHYVRKEYDEDR--------KRYLLKKGLDFKKDQSYMLYRLTQEQLKHA 171

Query: 168 --PFLRCRREDIRSFLLQRNISWCE 190
             P     +E++R+   +  +   +
Sbjct: 172 LFPLGNYTKEEVRALAEKIGLPVAD 196


>gi|323489888|ref|ZP_08095111.1| GMP synthase (glutamine-hydrolyzing) [Planococcus donghaensis
           MPA1U2]
 gi|323396457|gb|EGA89280.1| GMP synthase (glutamine-hydrolyzing) [Planococcus donghaensis
           MPA1U2]
          Length = 512

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + +H  + D      + + + VDH  LR+    E  
Sbjct: 211 IREEVGDKKVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFVDHGLLRKG---EAE 261

Query: 72  YV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V         +    +  ++           P+        E  Y    E +K      
Sbjct: 262 SVMKTFADGFNMNVIKIDARDRFMSKLEGVTDPEKKRKIIGNEFIYVFDDEASKLEGMDF 321

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 322 LAQGTLYTDIIE------SGTTTAQTIKSHHNVGGLPDDMQFKLIEPLNTLFKDEVRVLG 375

Query: 182 LQRN----ISWC 189
            +      I W 
Sbjct: 376 TELGMPEEIVWR 387


>gi|313157960|gb|EFR57366.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Alistipes sp. HGB5]
          Length = 519

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 23/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    +R  +    +++ +SGG DS    + LH  +            I VD   L
Sbjct: 208 SFVEATVRELREKLGDDKVVLGLSGGVDSSVAAVLLHKAIGK------NLYCIFVDSGLL 261

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH 113
           R+   ++V  +      + +    V               P+T      R+       E 
Sbjct: 262 RKNEFEDV--LESY-KNMGLNVKGVKAGAKFLGDLAGVCDPETKRKIIGRDFVEVFNEEA 318

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +  +   +     + D +E+V +       +    + G+ +     +NL I  P     
Sbjct: 319 VQIKDVRWLAQGTIYPDVIESVSVNGPSATIKSHHNVGGLPEK----MNLRIVEPLRLLF 374

Query: 174 REDIRSFLLQRNIS 187
           ++++R       IS
Sbjct: 375 KDEVRRVGRSLGIS 388


>gi|195952741|ref|YP_002121031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|226704772|sp|B4U7E2|MNMA_HYDS0 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|195932353|gb|ACG57053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 342

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 49/196 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           I V +SGG DS      L           +   +   K                  + R 
Sbjct: 3   IAVGMSGGVDSSVAAYLLKEQGHDVIGVTLRFYKEECKENARVCC-----SPKDVQDARI 57

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHAKT 116
           V   C  L I H  + W+N   +                   A   ++ + A +  + K 
Sbjct: 58  V---CDMLGIPHITLDWENLFKERVIDYFIKSYKTGLTPNPCAICNKDVKTAFLGFYLKQ 114

Query: 117 -INATLIMTAHTFDDQLETVYM----RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             +   + T H          +    + +R   +       +      D   ++  P   
Sbjct: 115 TADIDFLATGH--------YVIKEEGKIKRAKEKDQSYFMALVPKQSLD---YLMFPVGY 163

Query: 172 CRREDIRSFLLQRNIS 187
             +++IR    + N+ 
Sbjct: 164 MTKQEIRDIAKKINLP 179


>gi|119476442|ref|ZP_01616793.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine gamma proteobacterium HTCC2143]
 gi|119450306|gb|EAW31541.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine gamma proteobacterium HTCC2143]
          Length = 526

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 70/198 (35%), Gaps = 27/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E     VRSLV    +L+ +SGG DS  +   LH  +        + + + VD+  L
Sbjct: 213 NIVEDAVDTVRSLVGTDKVLLGLSGGVDSSVVAALLHRAI------GSQLTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGL---MAAAREARY-------ALIS 111
           R+   D    V D     + +   V+    +    G     +   + R         +  
Sbjct: 267 RKNEGD---QVMDMFAKNMGVK--VIRADAADIFLGNLVGESDPEKKRKIIGNTFIDIFD 321

Query: 112 EHAKTI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + A  I +   +     + D +E+    + +      +        +  D+   +  P  
Sbjct: 322 QQAALIQDVNWLAQGTIYPDVIES---AAGKTGKAHVIKSHHNVGGLPDDMQFKLIEPLR 378

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R   L+  + +
Sbjct: 379 ELFKDEVRKIGLELGLPY 396


>gi|327438518|dbj|BAK14883.1| GMP synthase, PP-ATPase domain/subunit [Solibacillus silvestris
           StLB046]
          Length = 544

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R  V    +L A+SGG DS  + + +H  + D      + + + VDH L    K EV  
Sbjct: 243 IREQVGDKQVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFVDHNL--NRKGEVEQ 294

Query: 73  V-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
           V         +    +  +          S P+        E  Y    E +K  +   +
Sbjct: 295 VMKTFTEDFDMKLIKIDARERFMNKLAGVSDPEQKRKIIGNEFIYVFDEESSKLKDMDFL 354

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R+  L
Sbjct: 355 AQGTLYTDIIE------SGTATAQTIKSHHNVGGLPEDMKFELIEPLNTLFKDEVRALGL 408

Query: 183 QRNIS 187
           +  + 
Sbjct: 409 ELGLP 413


>gi|326560705|gb|EGE11073.1| GMP synthase [Moraxella catarrhalis 46P47B1]
          Length = 519

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 215 LKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLNEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+   +       +A             RE       E  K     
Sbjct: 269 --QMFAENMGI--CVIRADSEARFLNALAGVSDPEAKRKIIGREFIEVFSEEARKLDGVK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 325 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 381

Query: 181 LLQRNISW 188
            +   I  
Sbjct: 382 GVALGIPH 389


>gi|126338491|ref|XP_001372324.1| PREDICTED: similar to guanosine 5-monophosphate synthetase
           [Monodelphis domestica]
          Length = 815

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 352 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALDQDQVIAVHIDNGFMR---KRESQ 403

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   VV+  +S
Sbjct: 404 SVEEALRKLGIQVKVVNAAHS 424


>gi|332975269|gb|EGK12169.1| GMP synthase [Kingella kingae ATCC 23330]
          Length = 523

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 66/195 (33%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH L R 
Sbjct: 205 IEEAIVKIREQVGNEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 258

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISE 112
               E + V D     L +   VV    ++   G +A              E      +E
Sbjct: 259 N---EGKNVMDMFARNLGVK--VVHIDATEQFMGKLAGVTDPEQKRKIIGAEFIEVFDAE 313

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +      +        +  ++ L +  P    
Sbjct: 314 EKKLTNAKWLAQGTIYPDVIES---AGAKTKKAHAIKSHHNVGGLPENMKLKLLEPLRDL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 371 FKDEVRELGVALGLP 385


>gi|295706703|ref|YP_003599778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium DSM 319]
 gi|294804362|gb|ADF41428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium DSM 319]
          Length = 370

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 40/198 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YNDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A T+ A  + T H       D  E   +R      ++   L+ +      D    +  P 
Sbjct: 117 AMTLGADYLATGHYARVAYRD-GEYKMLRGVDGNKDQTYFLNQLGQ----DQLSKVMFPI 171

Query: 170 LRCRREDIRSFLLQRNIS 187
               +  +R    +  ++
Sbjct: 172 GEIEKSKVREIAKEAGLA 189


>gi|294501356|ref|YP_003565056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium QM B1551]
 gi|294351293|gb|ADE71622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacillus megaterium QM B1551]
          Length = 370

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 40/198 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
                ++V +SGG DS    + L         +         +    +        A ++
Sbjct: 5   PKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDDTDENGVCT--------ATED 56

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
              V  VC+++ I +  V+++                A R          E ++    EH
Sbjct: 57  YNDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEH 116

Query: 114 AKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A T+ A  + T H       D  E   +R      ++   L+ +      D    +  P 
Sbjct: 117 AMTLGADYLATGHYARVAYRD-GEYKMLRGVDGNKDQTYFLNQLGQ----DQLSKVMFPI 171

Query: 170 LRCRREDIRSFLLQRNIS 187
               +  +R    +  ++
Sbjct: 172 GEIEKSKVREIAKEAGLA 189


>gi|229917716|ref|YP_002886362.1| exsB protein [Exiguobacterium sp. AT1b]
 gi|259551529|sp|C4L0V4|QUEC_EXISA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|229469145|gb|ACQ70917.1| exsB protein [Exiguobacterium sp. AT1b]
          Length = 214

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          + +   ++V  SGG DS   L       + + F  ++  A++  +  R  A+ EV    +
Sbjct: 1  MQHEKALVV-FSGGQDSTTCLF-----WAKQQFSHVE--AVTFAYGQRHDAEIEVA--KE 50

Query: 76 VCSRLRIAHSVVS 88
          + + L + H ++ 
Sbjct: 51 IAAELDVPHHILD 63


>gi|148643144|ref|YP_001273657.1| argininosuccinate synthase [Methanobrevibacter smithii ATCC 35061]
 gi|261350059|ref|ZP_05975476.1| argininosuccinate synthase [Methanobrevibacter smithii DSM 2374]
 gi|148552161|gb|ABQ87289.1| argininosuccinate synthase, ArgG [Methanobrevibacter smithii ATCC
           35061]
 gi|288860845|gb|EFC93143.1| argininosuccinate synthase [Methanobrevibacter smithii DSM 2374]
          Length = 391

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 55/192 (28%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +++A SGG D S+        +L ++    ++     VD        +E+     +  
Sbjct: 2   DKVVLAFSGGLDTSVC-----VKLLEEK--YDVEVITACVDVG---QGDEEIAKAEKMAK 51

Query: 79  RL-RIAHSVVSWKNS--------KPQTGLM--------AAAREARYALISEHAKTINATL 121
            +    H  +  K            +            A AR      I + AK   AT 
Sbjct: 52  EIGGYKHYTIDAKEEFANEYIARGIKANAEYEGYPLSTALARPLIAQKIIDIAKKEGATA 111

Query: 122 IMTAHT--FDDQ--LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRE 175
           I    T   +DQ   E V +                        +L I  P   L   R 
Sbjct: 112 IAHGCTGKGNDQFRFEAVILAMS---------------------DLDIIAPIRELNLTRT 150

Query: 176 DIRSFLLQRNIS 187
           + +++  ++ I 
Sbjct: 151 EEQAYAAEKGIK 162


>gi|119511902|ref|ZP_01631001.1| hypothetical protein N9414_02154 [Nodularia spumigena CCY9414]
 gi|119463470|gb|EAW44408.1| hypothetical protein N9414_02154 [Nodularia spumigena CCY9414]
          Length = 275

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 55/199 (27%), Gaps = 40/199 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E ++     +      L+A SGG DS  +    + VL DR+   +  +A+    
Sbjct: 1   MLTEKLEQLKVLFGEMEQA---LIAYSGGIDSTLVAKIAYDVLGDRA---LAVTAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEH 113
               +   +E+       + + I H +V                     +   +  +   
Sbjct: 51  --SPSLLPEELEDAKIQAATMGIPHKIVQTHEMDNPNYTSNPVNRCYFCKSELHDTLKPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           A  +    ++     DD                   L      I          P   + 
Sbjct: 109 ALQLGYPYVVDGVNADD-------------------LHDYRPGIQAAQERGARSPLAEIG 149

Query: 172 CRREDIRSFLLQRNISWCE 190
             +  +R    Q  + W +
Sbjct: 150 VTKAQVRQLSQQLGLPWWD 168


>gi|56419510|ref|YP_146828.1| aluminum resistance protein [Geobacillus kaustophilus HTA426]
 gi|56379352|dbj|BAD75260.1| aluminum resistance protein [Geobacillus kaustophilus HTA426]
          Length = 224

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 56/194 (28%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS   L       + + FG+++  A++ D+  R   + E+     +   L 
Sbjct: 10  VVV-FSGGQDSTTCLF-----WAKKQFGEVE--AVTFDYGQRH--RREIDVAQAIADELG 59

Query: 82  IAHSVVSWKNSKPQTGLMAAAREAR--------------------YALISEHAKTINATL 121
           + H+V+               R+                       +  +  AK   A  
Sbjct: 60  VRHTVLDLSLLGQLAPNALTRRDIAIEQKKGELPTTFVDGRNLLFLSFAAVFAKQRGARH 119

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLR 171
           I+T        ET              G     D  +  LN+           I  P + 
Sbjct: 120 IVTG-----VCET-----------DFSGYPDCRDVFIKSLNVTLNLAMDYEFVIHTPLMW 163

Query: 172 CRREDIRSFLLQRN 185
             + +      +  
Sbjct: 164 LTKAETWKLADELG 177


>gi|15838041|ref|NP_298729.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa 9a5c]
 gi|14195287|sp|Q9PDD9|MNMA_XYLFA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|9106458|gb|AAF84249.1|AE003974_4 tRNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 379

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 33/232 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+VA+SGG DS      L+S         +     + D   +  A+++ R    VC  L
Sbjct: 5   RIIVAMSGGVDSSVAAWRLNSQRET--IAGLFMRNWTDDGNGQCHAEEDRRDAVAVCGIL 62

Query: 81  RIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEHAKTINATLIMT 124
            IA     + +   Q      L   A            RE ++    E A+ + A  I T
Sbjct: 63  GIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADSIAT 122

Query: 125 AH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            H      +  +     +R      ++   L  +    L         P     +  +R 
Sbjct: 123 GHYARIKHY--RQRWHLLRGADRSKDQSYFLHQLGQEQLAATMF----PIGDLEKPQLRQ 176

Query: 180 FLLQRNISWC--EDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVK 229
              Q  +     +D +      ER   R F++   L A   +++  Q+ R+ 
Sbjct: 177 LAHQAGLPTHAKKDSTGICFIGERNF-REFLKQY-LPAQPGEIRDPQEQRIA 226


>gi|331005662|ref|ZP_08329029.1| GMP synthase (glutamine-hydrolyzing) [gamma proteobacterium
           IMCC1989]
 gi|330420520|gb|EGG94819.1| GMP synthase (glutamine-hydrolyzing) [gamma proteobacterium
           IMCC1989]
          Length = 524

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 67/197 (34%), Gaps = 25/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             +E     VR  V    +L+ +SGG DS  +   LH  + D      + + + VD+  L
Sbjct: 211 RIVEDAIVRVREQVGSEQVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLL 264

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEH--- 113
           R+   D+V   S     + +   V+     +               R+A      E    
Sbjct: 265 RKNEGDQVM--SMFAENMGVK--VIRVDAEELFLSKLAGVSDPELKRKAIGNTFIEIFDE 320

Query: 114 --AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             +K      +     + D +E+    + +      +        +  D+ + +  P   
Sbjct: 321 ESSKLNGVNWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMELVEPLRE 377

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R   L+  + +
Sbjct: 378 LFKDEVRKIGLELGLPY 394


>gi|326562312|gb|EGE12638.1| GMP synthase [Moraxella catarrhalis 103P14B1]
          Length = 519

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 215 LKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLNEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+   +       +A             RE       E  K     
Sbjct: 269 --QMFAENMGI--RVIRADSEARFLNALAGVSDPEAKRKIIGREFIEVFSEEARKLDGVK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 325 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 381

Query: 181 LLQRNISW 188
            +   I  
Sbjct: 382 GVALGIPH 389


>gi|312877398|ref|ZP_07737363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795872|gb|EFR12236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 360

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETA------K 67
              +LVA+SGG DS      L         +     + +      D  +RE +       
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETE----DELIREKSCCSLTAV 57

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           D+ R V+ +   L I + V + K+   +                       R+ ++ L  
Sbjct: 58  DDARRVAHI---LDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  +    I T H    + +    R   +R  A +      + +     L+  +  P 
Sbjct: 115 KKAMVLGMDYIATGHYAIIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLF-PL 173

Query: 170 LRCRREDIRSFLLQRNIS 187
            R  ++++R    +  + 
Sbjct: 174 GRFSKDEVRKLAEKFKLP 191


>gi|312793905|ref|YP_004026828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181045|gb|ADQ41215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 360

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 37/198 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETA------K 67
              +LVA+SGG DS      L         +     + +      D  +RE +       
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETE----DELIREKSCCSLTAV 57

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALIS 111
           D+ R V+ +   L I + V + K+   +                       R+ ++ L  
Sbjct: 58  DDARRVAHI---LDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  +    I T H    + +    R   +R  A +      + +     L+  +  P 
Sbjct: 115 KKAMVLGMDYIATGHYAIIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLF-PL 173

Query: 170 LRCRREDIRSFLLQRNIS 187
            R  ++++R    +  + 
Sbjct: 174 GRFSKDEVRKLAEKFKLP 191


>gi|297616542|ref|YP_003701701.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144379|gb|ADI01136.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 340

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 32/184 (17%)

Query: 24  VAV--SGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           VAV  SGG DS +  L     +L ++ +  I  + +         + +  +  ++V   L
Sbjct: 5   VAVLMSGGVDSGVAAL-----LLKEQGYDVIGLTML-------NWSAEVCQKAAEVARFL 52

Query: 81  RIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLIMT 124
            I+H VV  +    +  +    R                  ++ L+ E A  +    + T
Sbjct: 53  GISHHVVDLRAEFKRQVIDYFCRTYEEGLTPNPCVVCNEFVKFGLMLEQAWDVGCRWVAT 112

Query: 125 AHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H    +  ET      +   +     S     +  +    +  P     +++ +S   +
Sbjct: 113 GHYARVELDETTGRHLLKKGVDPKKDQSYFLYRLKQNQLCRLLFPLGNMTKQETKSIAAK 172

Query: 184 RNIS 187
             + 
Sbjct: 173 YGLP 176


>gi|170575385|ref|XP_001893218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Brugia malayi]
 gi|158600895|gb|EDP37948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase,
           putative [Brugia malayi]
          Length = 383

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 46/201 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRY 72
             ++ A+SGG DS      L      R F  I    ++ D   R            + + 
Sbjct: 5   RKVVCAISGGVDSAVSAYLLKK----RGFDVIGVHMVNWD---RAEEDSNNCPQSVDEKD 57

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC+ L+I   V ++ +       M      R+ R                       
Sbjct: 58  AEKVCNHLQIPFYVTNFVDKYWNEIFMYLLDNYRKGRTVVSDVLCNKTIKFDRFHKYAFD 117

Query: 116 TINATLIMTAHTF--------DDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLW 164
            + A  + T H          +++LET  +R          +   LS +  + L      
Sbjct: 118 ELQADAVATGHFARTSFGDFLENRLETGLIRLLAAVDPIKDQTFFLSTLTQSQLRRSMF- 176

Query: 165 ISRPFLRCRREDIRSFLLQRN 185
              P     ++ +R   +   
Sbjct: 177 ---PVGSLTKQQVRQIAIDAG 194


>gi|81428407|ref|YP_395407.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564381|sp|Q38XI3|MNMA_LACSS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78610049|emb|CAI55098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 379

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 39/194 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS    + L     D      +++    +    +        A ++   V
Sbjct: 8   RVVVGMSGGVDSSVTALLLKQQGYDVIGVFMKNWDDTDENGVCT--------ATEDYEDV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
           + V S++ I +  V+++                  R          E ++    ++A  +
Sbjct: 60  AKVASKIGIPYYSVNFEKEYWDRVFEYFLDEYKHGRTPNPDVMCNKEVKFKAFLDYAMEL 119

Query: 118 NATLIMTAHTFD-DQLETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +A  I   H    ++ E       R      ++   LS +    L         P    +
Sbjct: 120 DADFIAMGHYAQIERDENGIAHMLRGGDSNKDQTYFLSALSQDQLQKSMF----PIGHMQ 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  ++
Sbjct: 176 KSEVRRLAEEAGLA 189


>gi|159903879|ref|YP_001551223.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9211]
 gi|205816902|sp|A9BBQ7|MNMA_PROM4 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|159889055|gb|ABX09269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 406

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 67/220 (30%), Gaps = 49/220 (22%)

Query: 3   LSPIE-SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-----SAI 56
            SPIE  V   ++ L     I V +SGG DS      L           +       S  
Sbjct: 19  RSPIEMEVVSHLKQLQGEHAIAVGLSGGVDSSLTAALLVEAGWKVEGLTLWLMEGKGSCC 78

Query: 57  S---VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------------ 101
           +   VD              + +C +L+I H VV  +++  +  +               
Sbjct: 79  TEGLVD-------------AAGICEQLKIPHHVVDERSTFQKEVVENLVNGYQEGITPLP 125

Query: 102 -AREARYALISE----HAKTINATLIMTAHTFD-DQLETVYMRSQ-----RDYAEKGMGL 150
            +R  R+   S       K  N   I T H       ET  + S      R    +G+  
Sbjct: 126 CSRCNRFVKFSPMINWARKNRNLKRIATGHYARIKHAETNKLNSLDERKNRHQLLRGIDQ 185

Query: 151 SGMCDTILYDLN----LWISRPFLRCRREDIRSFLLQRNI 186
           +      LYDL+      +  P     +   R    +  +
Sbjct: 186 NKDQSYFLYDLSQEILGHVVFPLGALTKSFTRKEANRYGL 225


>gi|326578065|gb|EGE27925.1| GMP synthase [Moraxella catarrhalis O35E]
          Length = 519

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 215 LKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLNEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+   +       +A             RE       E  K     
Sbjct: 269 --QMFAENMGI--RVIRADSEARFLNALAGVSDPEAKRKIIGREFIEVFSEEARKLDGVK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 325 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 381

Query: 181 LLQRNISW 188
            +   I  
Sbjct: 382 GVALGIPH 389


>gi|324997628|ref|ZP_08118740.1| GMP synthase [Pseudonocardia sp. P1]
          Length = 531

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 14/191 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+     +R+ V   H + A+SGG DS     A+   L  R+ G  + + + VDH  L
Sbjct: 216 SIIDETVDAIRAQVGDGHAICALSGGVDS-----AVAGALVQRAIGD-RLTCVFVDHGLL 269

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R   +++V   +V+   + L        + ++          R+          +   A 
Sbjct: 270 RAGEREQVEKDFVAATGATLHTVDVADRFLDALAGVTDPEEKRKIIGREFIRVFEAATAE 329

Query: 121 LIMTAHTFDDQLE-TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRRED 176
           ++   H     ++ T+Y          G            +  D+   +  P     +++
Sbjct: 330 VVAD-HHVGFLVQGTLYPDVVESGGGDGTATIKSHHNVGGLPDDIEFALVEPLRALFKDE 388

Query: 177 IRSFLLQRNIS 187
           +R    +  + 
Sbjct: 389 VRMVGAELGLP 399


>gi|323700751|ref|ZP_08112663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio sp. ND132]
 gi|323460683|gb|EGB16548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio desulfuricans ND132]
          Length = 345

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 68/189 (35%), Gaps = 35/189 (18%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY---VSDVCS 78
           I VAVSGG DS+       ++L +R        A+         +         ++  C+
Sbjct: 3   IAVAVSGGMDSL----LALALLKERGEP---LLAVHGHFL--PPSPAWETVTTGLAGACA 53

Query: 79  RLRIAHS-----------VVSWKNSKPQTGL----MAAAR-EARYALISEHAKTINATLI 122
            L +              V+    ++ + GL     A      ++ ++ + A+ + A  +
Sbjct: 54  VLGVPFHALDLHASFDDRVIKPFVAEYKAGLTPNPCAMCNPRMKFGVLFDAARNLGAERL 113

Query: 123 MTAH--TFDDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            T H  + +D+ +  + +R      ++   LS +    L      ++R      + D+ +
Sbjct: 114 ATGHYVSMEDRAQGRMLVRGADQSKDQSYFLSMVPVEKLRLAEFPLARTL----KRDVPA 169

Query: 180 FLLQRNISW 188
            L    ++ 
Sbjct: 170 VLAAHGLTP 178


>gi|238926157|ref|ZP_04657917.1| GMP synthase (glutamine-hydrolyzing) [Selenomonas flueggei ATCC
           43531]
 gi|238885837|gb|EEQ49475.1| GMP synthase (glutamine-hydrolyzing) [Selenomonas flueggei ATCC
           43531]
          Length = 529

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    +R  +     L A+SGG DS    + L   +        + + + VDH  L
Sbjct: 216 SFVQTAIEELRQKIGRGRALCALSGGVDSSVAAVLLSKAI------GSQLTCVFVDHGLL 269

Query: 63  RETAKDEVRYV 73
           R+   DEV  V
Sbjct: 270 RKNEGDEVEAV 280


>gi|332073782|gb|EGI84260.1| GMP synthase [Streptococcus pneumoniae GA41301]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|331266499|ref|YP_004326129.1| bifunctional GMP synthase/glutamine amidotransferase protein,
           GMP-synthase [Streptococcus oralis Uo5]
 gi|326683171|emb|CBZ00789.1| bifunctional GMP synthase/glutamine amidotransferase protein,
           GMP-synthase [Streptococcus oralis Uo5]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|322376887|ref|ZP_08051380.1| GMP synthase [Streptococcus sp. M334]
 gi|321282694|gb|EFX59701.1| GMP synthase [Streptococcus sp. M334]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|322385509|ref|ZP_08059153.1| GMP synthase [Streptococcus cristatus ATCC 51100]
 gi|321270247|gb|EFX53163.1| GMP synthase [Streptococcus cristatus ATCC 51100]
          Length = 519

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 218 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 271

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 272 EMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 323

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 324 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 377

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 378 VRALGTELGMPDEIVWR 394


>gi|320586022|gb|EFW98701.1| gmp synthase [Grosmannia clavigera kw1407]
          Length = 1139

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDEVRYVSD 75
            A ++ AVSGG DS  +   +   + DR      F A+ VD+    L E A      V  
Sbjct: 234 KAQVIGAVSGGVDSTVVARLMKEAIGDR------FHAVLVDNGVMRLNECAD-----VKK 282

Query: 76  VCSR-LRIAHSVVSWKN---------SKPQTG------------LMAAAREARYALISEH 113
                L I  +++             ++P+T                A R          
Sbjct: 283 ALQEHLGINLTIIDGGALFLGRLKGVTEPETKRKIIGGTFIDLFEEEAIRIE--KAAENT 340

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A        +    + D +E++ + +  +  +    + G+   ++    L +  P     
Sbjct: 341 ANAGKVEFFVQGTLYPDVIESLSLNTN-NTVKTHHNVGGLPARMMNGQGLKLIEPLRELF 399

Query: 174 REDIRSFLLQRNIS 187
           ++++R+F  +  I 
Sbjct: 400 KDEVRAFGRKLGIP 413


>gi|315613049|ref|ZP_07887960.1| GMP synthase [Streptococcus sanguinis ATCC 49296]
 gi|315315159|gb|EFU63200.1| GMP synthase [Streptococcus sanguinis ATCC 49296]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|307703820|ref|ZP_07640761.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus oralis ATCC
           35037]
 gi|307622655|gb|EFO01651.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus oralis ATCC
           35037]
          Length = 513

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 212 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 265

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 266 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 317

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 318 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 371

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 372 VRALGTELGMPDHIVWR 388


>gi|307709035|ref|ZP_07645495.1| GMP synthase [Streptococcus mitis SK564]
 gi|307620371|gb|EFN99487.1| GMP synthase [Streptococcus mitis SK564]
          Length = 513

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 212 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 265

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 266 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 317

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 318 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 371

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 372 VRALGTELGMPDHIVWR 388


>gi|307706804|ref|ZP_07643609.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus mitis SK321]
 gi|307617889|gb|EFN97051.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus mitis SK321]
          Length = 513

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 212 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 265

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 266 EMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 317

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 318 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 371

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 372 VRALGTELGMPDHIVWR 388


>gi|306825339|ref|ZP_07458680.1| GMP synthase [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432471|gb|EFM35446.1| GMP synthase [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|304315237|ref|YP_003850384.1| transcriptional regulator [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588696|gb|ADL59071.1| predicted transcriptional regulator [Methanothermobacter
           marburgensis str. Marburg]
          Length = 223

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 45/192 (23%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +S G DS      L S        + +  A++ D+  R +A  E+ +   +   L I H+
Sbjct: 8   LSAGMDSAVATALLAS--------EYEIHALTFDYGQR-SAAMEIEHARKLAKHLGIEHT 58

Query: 86  VVSW---------------------KNSKPQTGLMAAAREA---RYALISEH----AKTI 117
            +                            +  L  A R     R  + +      A+ +
Sbjct: 59  TIELPWLGRLGGSALTAGGEIPSPADLDDREECLETARRVWVPGRNIVFTAIGVSFAEAL 118

Query: 118 NATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +A  ++    +D ++ ET       + AE     + +         + +  P +   + +
Sbjct: 119 DADAVIVG--WDLEEAETF----PDNSAEFLDAFNRLLGIGTLR-GVEVRAPLIGMTKRE 171

Query: 177 IRSFLLQRNISW 188
           I        + +
Sbjct: 172 IVEVGSAVGLPF 183


>gi|293365279|ref|ZP_06611996.1| GMP synthase [Streptococcus oralis ATCC 35037]
 gi|291316729|gb|EFE57165.1| GMP synthase [Streptococcus oralis ATCC 35037]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|289168181|ref|YP_003446450.1| GMP-synthase [Streptococcus mitis B6]
 gi|288907748|emb|CBJ22585.1| GMP-synthase [Streptococcus mitis B6]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|225857075|ref|YP_002738586.1| GMP synthase [Streptococcus pneumoniae P1031]
 gi|254800121|sp|C1CLE8|GUAA_STRZP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|225725470|gb|ACO21322.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae P1031]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|221232174|ref|YP_002511327.1| GMP synthase [Streptococcus pneumoniae ATCC 700669]
 gi|225854888|ref|YP_002736400.1| GMP synthase [Streptococcus pneumoniae JJA]
 gi|254800118|sp|B8ZKZ5|GUAA_STRPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800120|sp|C1CF29|GUAA_STRZJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|220674635|emb|CAR69203.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pneumoniae ATCC
           700669]
 gi|225723988|gb|ACO19841.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae JJA]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|168486141|ref|ZP_02710649.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC1087-00]
 gi|183570763|gb|EDT91291.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC1087-00]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|157149979|ref|YP_001450409.1| GMP synthase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074773|gb|ABV09456.1| GMP synthase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 518

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 217 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 270

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 271 EMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 322

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 323 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 376

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 377 VRALGTELGMPDEIVWR 393


>gi|15901295|ref|NP_345899.1| GMP synthase [Streptococcus pneumoniae TIGR4]
 gi|15903343|ref|NP_358893.1| GMP synthase [Streptococcus pneumoniae R6]
 gi|111657364|ref|ZP_01408121.1| hypothetical protein SpneT_02001417 [Streptococcus pneumoniae
           TIGR4]
 gi|116516474|ref|YP_816740.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae D39]
 gi|148984786|ref|ZP_01818039.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP3-BS71]
 gi|148990253|ref|ZP_01821464.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP6-BS73]
 gi|148997498|ref|ZP_01825103.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP11-BS70]
 gi|149002837|ref|ZP_01827763.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007285|ref|ZP_01830943.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP18-BS74]
 gi|149019388|ref|ZP_01834750.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP23-BS72]
 gi|168489607|ref|ZP_02713806.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae SP195]
 gi|168491344|ref|ZP_02715487.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC0288-04]
 gi|168575904|ref|ZP_02721819.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae MLV-016]
 gi|169833631|ref|YP_001694864.1| GMP synthase [Streptococcus pneumoniae Hungary19A-6]
 gi|194397166|ref|YP_002038080.1| GMP synthase [Streptococcus pneumoniae G54]
 gi|225859208|ref|YP_002740718.1| GMP synthase [Streptococcus pneumoniae 70585]
 gi|225860783|ref|YP_002742292.1| GMP synthase [Streptococcus pneumoniae Taiwan19F-14]
 gi|237651096|ref|ZP_04525348.1| GMP synthase [Streptococcus pneumoniae CCRI 1974]
 gi|237821029|ref|ZP_04596874.1| GMP synthase [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229110|ref|ZP_06962791.1| GMP synthase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254966|ref|ZP_06978552.1| GMP synthase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502600|ref|YP_003724540.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|307068096|ref|YP_003877062.1| GMP synthase [Streptococcus pneumoniae AP200]
 gi|307126986|ref|YP_003879017.1| GMP synthase [Streptococcus pneumoniae 670-6B]
 gi|54037232|sp|P64298|GUAA_STRR6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54041336|sp|P64297|GUAA_STRPN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122278374|sp|Q04JQ8|GUAA_STRP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739747|sp|B5E5U0|GUAA_STRP4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739753|sp|B1ICM9|GUAA_STRPI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800117|sp|C1C842|GUAA_STRP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800122|sp|C1CQS0|GUAA_STRZT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|14972933|gb|AAK75539.1| GMP synthase [Streptococcus pneumoniae TIGR4]
 gi|15458943|gb|AAL00104.1| Glutamine amidotransferase [Streptococcus pneumoniae R6]
 gi|116077050|gb|ABJ54770.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae D39]
 gi|147756553|gb|EDK63594.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP11-BS70]
 gi|147759131|gb|EDK66125.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP14-BS69]
 gi|147761089|gb|EDK68057.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP18-BS74]
 gi|147922808|gb|EDK73924.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP3-BS71]
 gi|147924392|gb|EDK75482.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae SP6-BS73]
 gi|147931258|gb|EDK82237.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996133|gb|ACA36745.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae Hungary19A-6]
 gi|183571993|gb|EDT92521.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae SP195]
 gi|183574391|gb|EDT94919.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC0288-04]
 gi|183578306|gb|EDT98834.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae MLV-016]
 gi|194356833|gb|ACF55281.1| GMP synthase [Streptococcus pneumoniae G54]
 gi|225720527|gb|ACO16381.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae 70585]
 gi|225727150|gb|ACO23001.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238195|gb|ADI69326.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|301794473|emb|CBW36911.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pneumoniae
           INV104]
 gi|301800299|emb|CBW32924.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pneumoniae
           OXC141]
 gi|306409633|gb|ADM85060.1| GMP synthase, PP-ATPase domain/subunit [Streptococcus pneumoniae
           AP200]
 gi|306484048|gb|ADM90917.1| GMP synthase [Streptococcus pneumoniae 670-6B]
 gi|327389631|gb|EGE87976.1| GMP synthase [Streptococcus pneumoniae GA04375]
 gi|332073751|gb|EGI84230.1| GMP synthase [Streptococcus pneumoniae GA17570]
 gi|332200887|gb|EGJ14959.1| GMP synthase [Streptococcus pneumoniae GA41317]
 gi|332203275|gb|EGJ17343.1| GMP synthase [Streptococcus pneumoniae GA47901]
          Length = 520

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|332857065|ref|ZP_08436371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii 6013150]
 gi|332870003|ref|ZP_08438979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii 6013113]
 gi|332726880|gb|EGJ58394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii 6013150]
 gi|332732503|gb|EGJ63754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii 6013113]
          Length = 381

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 40/197 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 8   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V  ++ I     ++                AA R          E ++    +HA T+
Sbjct: 60  QAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTL 119

Query: 118 NATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H    + ET        Y    R           +      ++N  +  P  
Sbjct: 120 GADFIATGHYAR-RAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLF-PVG 177

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    + +++
Sbjct: 178 EIEKPEVRRIAEELDLA 194


>gi|326926259|ref|XP_003209320.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Meleagris
           gallopavo]
          Length = 710

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 247 IKEKVGSSKVLVLLSGGVDSTVCTALL-----NRALNRDQVIAVHIDNGFMR---KRESQ 298

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   VV+  +S
Sbjct: 299 SVEEALKKLGIQVKVVNAAHS 319


>gi|302387619|ref|YP_003823441.1| argininosuccinate synthase [Clostridium saccharolyticum WM1]
 gi|302198247|gb|ADL05818.1| argininosuccinate synthase [Clostridium saccharolyticum WM1]
          Length = 408

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 51/208 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------------HCLRET 65
              +++A SGG D+         +   +     +     +D               L   
Sbjct: 2   KEKVILAYSGGLDTTA------IIPWLKEHFDYEVVCCCIDCGQGNELDGLEERAKLSGA 55

Query: 66  AKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +K      V D C    +   + +           + AR A    + E A+   AT I  
Sbjct: 56  SKLYIEDLVDDFCDNYIVPCVLANAVYENKYLLGTSMARPAIAKRLVEIARKEGATAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC------RRED 176
             T   +DQ+               +G+  +        +L I  P+          RED
Sbjct: 116 GATGKGNDQI------------RFELGIKALAP------DLTIIAPWRMTDVWTMKSRED 157

Query: 177 IRSFLLQRNISWCED-PSNTDDRFERVR 203
              +  Q  I    D P + D+ + R R
Sbjct: 158 EIEYCKQHGI----DLPFSADNSYSRDR 181


>gi|239996402|ref|ZP_04716926.1| putative regulator protein [Alteromonas macleodii ATCC 27126]
          Length = 218

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 9/71 (12%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          +++V  SGG DS  +L    ++ + +     K  A+S ++  R   K E+ Y ++VC+ L
Sbjct: 4  NVVVIYSGGMDSFTVLH--KALKAGK-----KVHALSFNYGQRH--KKELDYAANVCNSL 54

Query: 81 RIAHSVVSWKN 91
           + H +V    
Sbjct: 55 NVPHKIVDISA 65


>gi|57529561|ref|NP_001006556.1| GMP synthase [Gallus gallus]
 gi|53136506|emb|CAG32582.1| hypothetical protein RCJMB04_30a22 [Gallus gallus]
          Length = 693

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKEKVGSSKVLVLLSGGVDSTVCTALL-----NRALNRDQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   VV+  +S
Sbjct: 282 SVEEALKKLGIQVKVVNAAHS 302


>gi|282901416|ref|ZP_06309341.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193695|gb|EFA68667.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 350

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 61/205 (29%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIK----FSAISVDHCLRETA 66
             ++V +SGG DS      LH+         +   +  G+        A ++        
Sbjct: 3   KKVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLMKGKGQCCSEGMVDAATI-------- 54

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGL----MAAA-REARYA-L 109
                     C +L I H +V  ++           S    G+     +   R  ++  +
Sbjct: 55  ----------CQQLSIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPM 104

Query: 110 ISEHAKTINATLIMTAH-------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           +    + + + +I T H          ++ +   +R+     ++   L  +   +L    
Sbjct: 105 LEYAREKLGSDVIATGHYARIAYDHGTERYQ--LLRAFDRNKDQSYFLYDLSQELLAGT- 161

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
                P     + D R    +  + 
Sbjct: 162 ---IFPLGELNKNDTRKIAAEYGLK 183


>gi|184158965|ref|YP_001847304.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii ACICU]
 gi|205811014|sp|B2HVN5|MNMA_ACIBC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|183210559|gb|ACC57957.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Acinetobacter baumannii ACICU]
 gi|322508947|gb|ADX04401.1| trmU [Acinetobacter baumannii 1656-2]
 gi|323518933|gb|ADX93314.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 377

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 58/197 (29%), Gaps = 40/197 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V  ++ I     ++                AA R          E ++    +HA T+
Sbjct: 56  QAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTL 115

Query: 118 NATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H    + ET        Y    R   +       +      ++N  +  P  
Sbjct: 116 GADFIATGHYAR-RAETAYNSKGEAYAPLLRGLDKNKDQTYFLHAVHGREINKTLF-PVG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    + +++
Sbjct: 174 EIEKPEVRRIAEELDLA 190


>gi|331702163|ref|YP_004399122.1| GMP synthase [Lactobacillus buchneri NRRL B-30929]
 gi|329129506|gb|AEB74059.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus buchneri NRRL
           B-30929]
          Length = 517

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+    E  
Sbjct: 216 IREEVGDKKVLLGLSGGVDSSVVGVLLHKAIGK------QLTSIFVDHGLLRKN---EAD 266

Query: 72  YVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V D +  +  +    V  ++           P+        E       E +K      
Sbjct: 267 QVMDSLVGKFGLNIIKVDAQDRFLSKLKGVTDPEKKRKIIGNEFIQVFNDEASKLHGIDF 326

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     +++ R+  
Sbjct: 327 LAQGTLYTDVVE------SGTDTAQTIKSHHNVGGLPEDMKFKLIEPLNTLFKDEARAIG 380

Query: 182 LQRN----ISWC 189
            +      + W 
Sbjct: 381 EKLGMPETLVWR 392


>gi|212692103|ref|ZP_03300231.1| hypothetical protein BACDOR_01598 [Bacteroides dorei DSM 17855]
 gi|237709042|ref|ZP_04539523.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. 9_1_42FAA]
 gi|237724623|ref|ZP_04555104.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. D4]
 gi|265755531|ref|ZP_06090152.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 3_1_33FAA]
 gi|212665495|gb|EEB26067.1| hypothetical protein BACDOR_01598 [Bacteroides dorei DSM 17855]
 gi|229436818|gb|EEO46895.1| glutaminne-hydrolyzing GMP synthase [Bacteroides dorei 5_1_36/D4]
 gi|229457104|gb|EEO62825.1| glutaminne-hydrolyzing GMP synthase [Bacteroides sp. 9_1_42FAA]
 gi|263234137|gb|EEZ19730.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 3_1_33FAA]
          Length = 517

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 29/196 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIETTVAELKAQLGNDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHA 114
           R+     V +  D  C  L +     S K      G+     + R         +  E A
Sbjct: 252 RKNEFKNVLH--DYECLGLNVIGVDASQKFFSELAGVEEP-EKKRKIIGKGFIDVFDEEA 308

Query: 115 KTI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLR 171
             I +   +     + D +E++        +  G  +        +   +NL +  P   
Sbjct: 309 HKIKDVKWLAQGTIYPDCIESL--------SITGTVIKSHHNVGGLPEKMNLKLCEPLRL 360

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +  + 
Sbjct: 361 LFKDEVRHVGRELGMP 376


>gi|254451424|ref|ZP_05064861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 238]
 gi|198265830|gb|EDY90100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Octadecabacter antarcticus 238]
          Length = 379

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 47/186 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDEVRY 72
            ++VA+SGG DS  +   L     D     ++      DH             A  ++  
Sbjct: 20  RVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLY----DHG--AALAKKGACCAGRDIHD 73

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKT 116
              V   +   H V+ ++N+  +  +   A                   ++  + E AK 
Sbjct: 74  ARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFKDLLETAKD 133

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           ++A  + T H             QR    +G  L    +    D +      FL   + +
Sbjct: 134 LDADCMATGH-----------YIQRKMGARGAELHC-AEDANRDQSY-----FLFSTKPE 176

Query: 177 IRSFLL 182
              +L 
Sbjct: 177 QLDYLR 182


>gi|150006078|ref|YP_001300822.1| GMP synthase [Bacteroides vulgatus ATCC 8482]
 gi|254883446|ref|ZP_05256156.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 4_3_47FAA]
 gi|294775257|ref|ZP_06740780.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
 gi|319641767|ref|ZP_07996448.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 3_1_40A]
 gi|226738388|sp|A6L686|GUAA_BACV8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149934502|gb|ABR41200.1| glutaminne-hydrolyzing GMP synthase [Bacteroides vulgatus ATCC
           8482]
 gi|254836239|gb|EET16548.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 4_3_47FAA]
 gi|294450834|gb|EFG19311.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides vulgatus PC510]
 gi|317386601|gb|EFV67499.1| glutamine-hydrolyzing GMP synthase [Bacteroides sp. 3_1_40A]
          Length = 517

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 29/196 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIETTVAELKAQLGNDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHA 114
           R+     V +  D  C  L +     S K      G+     + R         +  E A
Sbjct: 252 RKNEFKNVLH--DYECLGLNVIGVDASQKFFSELAGVEEP-EKKRKIIGKGFIDVFDEEA 308

Query: 115 KTI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPFLR 171
             I +   +     + D +E++        +  G  +        +   +NL +  P   
Sbjct: 309 HKIKDVKWLAQGTIYPDCIESL--------SITGTVIKSHHNVGGLPEKMNLKLCEPLRL 360

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +  + 
Sbjct: 361 LFKDEVRHVGRELGMP 376


>gi|18310765|ref|NP_562699.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens str. 13]
 gi|18145446|dbj|BAB81489.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium perfringens str. 13]
          Length = 350

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 62/210 (29%)

Query: 27  SGGSDSMGLLIALHSV-----------------LSDRSFGKIKFSAISVDHCLRETAKDE 69
           SGG DS      L                      +R  G    SA+           D+
Sbjct: 2   SGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAV-----------DD 50

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-ARYALISEH 113
            R V     +L I   V+++++S  +                    A  +  ++  + + 
Sbjct: 51  ARRV---AQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQK 107

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           AK I A  + T H       D + +   +RS+ D  ++   L  +    L    +    P
Sbjct: 108 AKGIGADYVATGHYAKIEERDGRFQ--LIRSKDDRKDQTYALYNLTQEQLEHTLM----P 161

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDR 198
                ++ IR    +  +    D  N  D 
Sbjct: 162 CGEFTKDKIREIAKEIGL----DVHNKKDS 187


>gi|148265151|ref|YP_001231857.1| GMP synthase [Geobacter uraniireducens Rf4]
 gi|146398651|gb|ABQ27284.1| GMP synthase (glutamine-hydrolyzing) [Geobacter uraniireducens Rf4]
          Length = 516

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 24/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE+    +R  V    +L A+SGG DS  + + +H  + D      +   + V++  L
Sbjct: 204 NFIETEIESIRRKVGTGRVLCALSGGVDSSVVAVLIHKAIGD------QLHCVFVNNGLL 257

Query: 63  RETAKDEVRYVSDVCSRL---RIAHSVVSWK-------NSKPQTGLMAAAREARYALISE 112
           R+    E   V ++ S+     + +   S +        S P+T       E  Y    E
Sbjct: 258 RKG---EAEKVVNLFSKHFRINLDYVDASDRFLEKLSGVSDPETKRKIIGNEFIYLFEEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+V            +        +   +NL +  P    
Sbjct: 315 AKKIGKVDYLAQGTLYPDVIESV----STKGPSAVIKSHHNVGGLPEKMNLKLLEPVREL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 371 FKDEVRLLGKELGMP 385


>gi|312144534|ref|YP_003995980.1| hypothetical protein Halsa_2216 [Halanaerobium sp. 'sapolanicus']
 gi|311905185|gb|ADQ15626.1| hypothetical protein Halsa_2216 [Halanaerobium sp. 'sapolanicus']
          Length = 272

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 43/191 (22%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HC 61
           E     + +L      ++A SGG DS  L  A           +++F A++V+       
Sbjct: 8   EKYSILLDNLKNLEPFILAFSGGVDSTFLTAAALD-------AEVEFEAVTVNTPFVP-- 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA---LISEHAKTIN 118
                + E+  + ++   L+  H  +    S+ +  L        Y    + S+  +   
Sbjct: 59  -----QREINEIKELVKELKFEHRQLDIGLSELEKALENTPERCYYCKEIIFSKIKEYAG 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRRED 176
              I+     DD              +   G   + +       L +  P L     +++
Sbjct: 114 EREIIEGSNLDD------------TGDYRPGRKALKE-------LKVKSPLLDAGFTKKE 154

Query: 177 IRSFLLQRNIS 187
           IRS   + ++S
Sbjct: 155 IRSLSKKMDLS 165


>gi|205814682|sp|Q11UP4|MNMA_CYTH3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 50/218 (22%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDE 69
           +     +LVA+SGG DS    + LH    +      +++                 +K E
Sbjct: 1   MSKKGRVLVAMSGGIDSSVAAVMLHEQGYEVIGMTMKTWDYANLG----------GSKKE 50

Query: 70  VRYV--------SDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAAR-EA 105
                        ++   L   H +V  +                               
Sbjct: 51  TGCCSLDSINDARNIAVSLGFPHYIVDIREEFGDYVINHFNKEYLDGRTPNPCVLCNTHI 110

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           ++  +   A  ++   I T H    + E    V  +   +  ++   L G+    L    
Sbjct: 111 KWDSLLRRADKMDCDFIATGHYAQVRSENNRFVISKGLDENKDQSYALWGISQQSLSRTM 170

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                P     + DIR+   +R      D  N  + +E
Sbjct: 171 F----PLGHLHKTDIRAMAAERG---FMDLVNKSESYE 201


>gi|222823526|ref|YP_002575100.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter lari RM2100]
 gi|254800090|sp|B9KFL4|GUAA_CAMLR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222538748|gb|ACM63849.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter lari RM2100]
          Length = 511

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 27/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L AVSGG DS  +   L S + D      +   + VD+  LR   K++V 
Sbjct: 209 IKEEVGNDKVLCAVSGGVDSSVVAALLASAIKD------QVVVVFVDNGLLRSGEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARY-------ALISEHAKTI-NAT 120
           Y+      L I    +S    +     +A  R   + R         +  E AK   +  
Sbjct: 263 YMFK--HTLGIDL--ISIDAREIFLSRLAGVRDPEQKRKIIGNTFIEVFEEEAKKHKDVK 318

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+  + + +               +   +NL +  P     ++++R+ 
Sbjct: 319 YLAQGTLYTDIIESSVVGASKTIKS-----HHNVGGLPEKMNLKLIEPLKEIFKDEVRAL 373

Query: 181 LLQRNIS 187
            ++  +S
Sbjct: 374 GMELGLS 380


>gi|78356515|ref|YP_387964.1| GMP synthase [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|91206806|sp|Q311X7|GUAA_DESDG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78218920|gb|ABB38269.1| GMP synthase (glutamine-hydrolyzing) [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 516

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 69/190 (36%), Gaps = 24/190 (12%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAK 67
           ++     +     ++ A+SGG DS  + + LH  +  R         I VD+  LR    
Sbjct: 209 IKEVSEQVGPDDQVVCALSGGIDSTVVAVLLHKAIGHR------LHCIFVDNGVLRLN-- 260

Query: 68  DEVRYVSDVCSRL-RIAHSVVSWKNS--KPQTGLMAAAREAR---YALISEHAKTI---- 117
            EV  VS        +  +VV  +    K   G+    ++ +   Y  I    +      
Sbjct: 261 -EVDEVSGYLREHFDLNLTVVDARERFMKQFAGVEDPEKKRKIIGYTFIDVFDEESQKIP 319

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   +     + D +E++  +      +    + G+ +T    + L +  P     ++++
Sbjct: 320 NVKYLAQGTLYPDVIESISHKGPSAVIKSHHNVGGLPET----MKLKLIEPLRELFKDEV 375

Query: 178 RSFLLQRNIS 187
           R   ++  + 
Sbjct: 376 RKLAVELGLP 385


>gi|323143708|ref|ZP_08078378.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain
           [Succinatimonas hippei YIT 12066]
 gi|322416511|gb|EFY07175.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain
           [Succinatimonas hippei YIT 12066]
          Length = 522

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 69/195 (35%), Gaps = 22/195 (11%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           ++ I+     +R  V  A +L+ +SGG DS    + LH  + D      K + + VD+  
Sbjct: 209 MAIIDDAVARIRREVGDAKVLLGLSGGVDSSVTALLLHKAIGD------KLTCVFVDNGL 262

Query: 62  LRETAKDEVRYVSDVCSRLRIAHS----VVSWKNSKPQTGLMAAAREA-----RYALISE 112
           LR     E + V D+ + + +          + ++        A R+A           E
Sbjct: 263 LRLN---EGQQVKDMFADMGLNIVYADASERFLSALKGISDPEAKRKAIGHTFIDVFADE 319

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + +      +        +  DL   +  P    
Sbjct: 320 ARKLEGVDFLAQGTIYPDVIES---AAAKTGKAHVIKSHHNVGGLPDDLKFKLVEPLREL 376

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   ++  + 
Sbjct: 377 FKDEVRRIGVKLGLP 391


>gi|304413559|ref|ZP_07395032.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Candidatus Regiella insecticola LSR1]
 gi|304284402|gb|EFL92795.1| putative tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Candidatus Regiella insecticola LSR1]
          Length = 367

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 59/195 (30%), Gaps = 41/195 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             I+V +SGG DS      L       +   +K           E        A  ++  
Sbjct: 7   KKIIVGMSGGVDSSVAAYLLKQQGYQVAGLFMK--------NWEEDDNDTYCGAAKDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARY-ALISEHAK 115
              VC +L I    V++         K       A R          E ++ A +S   +
Sbjct: 59  AQAVCDKLNINLHRVNFAAEYWDNVFKLFLAEYQAGRTPNPDILCNKEIKFNAFLSFACE 118

Query: 116 TINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            + A  I T H          +   +R   D  ++   L  +    L         P   
Sbjct: 119 ELEADYIATGHYVRRHTS-AGKNCLLRGLDDNKDQSYFLYTLNQQQLARS----LFPIGD 173

Query: 172 CRREDIRSFLLQRNI 186
            ++ ++R+   Q N+
Sbjct: 174 LKKSEVRNIAEQLNL 188


>gi|254416610|ref|ZP_05030361.1| GMP synthase, C-terminal domain protein [Microcoleus chthonoplastes
           PCC 7420]
 gi|196176576|gb|EDX71589.1| GMP synthase, C-terminal domain protein [Microcoleus chthonoplastes
           PCC 7420]
          Length = 542

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 28/197 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC----L 62
           E++R  +R+ V    +L+A+SGG DS  L   LH  + D      + + + +D      L
Sbjct: 227 EAIRE-IRAKVGDKRVLLALSGGVDSSTLAFLLHKAIGD------QLTCMFIDQGFMRKL 279

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHA 114
                   R V        I    V+ ++      +  T      R   +       E +
Sbjct: 280 EPE-----RLVKLFQDEFHIPVEYVNARDRFLARLEGVTDPEEKRRRIGHEFIRVFEEQS 334

Query: 115 KTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFL 170
           K +     +     + D +E+          E+             +  DL   +  P  
Sbjct: 335 KILGPFDYLAQGTLYPDVIESADTNVDPKTGERVAVKIKSHHNVGGLPKDLRFKLVEPLR 394

Query: 171 RCRREDIRSFLLQRNIS 187
           +  ++++R       + 
Sbjct: 395 KLFKDEVRKVGRSIGLP 411


>gi|157813134|gb|ABV81312.1| putative GMP synthetase [Lithobius forticatus]
          Length = 197

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDE 69
            +++  V    +L+ VSGG DS      LH  L +      +  A+ +D+   R+    E
Sbjct: 35  HYIQETVGNHKVLMLVSGGVDSTVCAALLHKALKED-----QVIAVHIDNGFMRKN---E 86

Query: 70  VRYVSDVCSRLRIAHSVVS 88
            + V    +++ +   VV+
Sbjct: 87  SKQVEQSLNKIGLKLKVVN 105


>gi|239943680|ref|ZP_04695617.1| GMP synthase [Streptomyces roseosporus NRRL 15998]
 gi|239990132|ref|ZP_04710796.1| GMP synthase [Streptomyces roseosporus NRRL 11379]
 gi|291447144|ref|ZP_06586534.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptomyces roseosporus NRRL 15998]
 gi|291350091|gb|EFE76995.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Streptomyces roseosporus NRRL 15998]
          Length = 528

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 72/197 (36%), Gaps = 24/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E     +R  V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 211 NVVEEQVALIREQVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 264

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARY---ALISE 112
           R+   ++V   +V+   ++L++  +   + +     S P+       RE          E
Sbjct: 265 RKGETEQVEKDFVAATGAKLKVVDAEKRFLDALAGVSDPEQKRKIIGREFIRVFEQAQLE 324

Query: 113 HAKTINATL--IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             +     +  ++    + D +E+             +        +  D+   +  P  
Sbjct: 325 ILQEEGPEVAFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDIEFQLVEPLR 379

Query: 171 RCRREDIRSFLLQRNIS 187
           +  ++++R    +  + 
Sbjct: 380 QLFKDEVRMVGQELGLP 396


>gi|220935011|ref|YP_002513910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996321|gb|ACL72923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 364

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 60/203 (29%), Gaps = 40/203 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVR 71
           P HI+V +SGG DS    + L           +K           E        A +++ 
Sbjct: 4   PRHIIVGMSGGVDSSVAALLLIQAGYRVEGLFMK--------NWEEDDEPGYCAAAEDLA 55

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
               VC  L I    V++                 A R          E ++    ++A+
Sbjct: 56  DAKAVCEVLEIPLHKVNFSADYWHRVFSHFLDEYQAGRTPNPDILCNKEIKFRAFLDYAR 115

Query: 116 TINATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            + A  I T H      D  E+  + + RD  +                +L+   P    
Sbjct: 116 QLGADGIATGHYARIGRD-GESYTLLAGRDANKDQTYFLYTLGQEQLSKSLF---PIGEL 171

Query: 173 RREDIRSFLLQRNISWC--EDPS 193
            +  +R       +     +D +
Sbjct: 172 EKPRVRDLARAHGLPVFAKKDST 194


>gi|223940293|ref|ZP_03632151.1| GMP synthase, large subunit [bacterium Ellin514]
 gi|223891060|gb|EEF57563.1| GMP synthase, large subunit [bacterium Ellin514]
          Length = 513

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 65/197 (32%), Gaps = 23/197 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             S I+     +R+ V    +++ +SGG DS      LH  + +      + + I V++ 
Sbjct: 198 MHSYIDQAVEAIRNQVGNEKVILGLSGGVDSSVAAALLHKAIGN------QLTCIFVNNG 251

Query: 62  -LRETAKDEVRYVSD-VCSRLRIAHSVVSWKN--SKPQTGLMAAAREAR------YALIS 111
            LR     E + V +      +I        N   K   G+    R+ +        +  
Sbjct: 252 LLRG---REAKTVQEVFGRHFKIKLQYEDASNLFLKRLKGVTDPERKRKIIGKTFIEVFE 308

Query: 112 EHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              K    A  +     + D +E+V +          +        +   +   +  P  
Sbjct: 309 AATKRAGKAKFLAQGTLYPDIIESVPIA---GNPAAMIKSHHNVGGLPKKMRFQLVEPLK 365

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   L+  + 
Sbjct: 366 SLFKDEVRELGLELGLP 382


>gi|262306037|gb|ACY45611.1| gln amidotransferase [Eumesocampa frigilis]
          Length = 196

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++ +V    +L+ VSGG DS      L+  L +      +  A+ +D+   R+    E 
Sbjct: 36  YIKEVVQNNKVLLLVSGGVDSTVCAALLNKALKED-----QVIAVHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V     +L +   VV+
Sbjct: 88  IKVEQSLRKLGLRLRVVN 105


>gi|227487027|ref|ZP_03917343.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093101|gb|EEI28413.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 609

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 64/186 (34%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKD--E 69
           VR  +     +  +SGG DS     A+ + +  R+ G  + + + VDH L R   +   E
Sbjct: 303 VRQQIGDGRAICGLSGGVDS-----AVAAAIVQRAIGD-RLTCVFVDHGLLRAGERQQVE 356

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------R--YALISEHAKTINATL 121
             +V    ++L       ++ +         A R+A      R     ++      +   
Sbjct: 357 EDFVKATGAKLVTVDESEAFLSKLAGVTEPEAKRKAIGAEFIRSFERAVAGVLDGQDVGF 416

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+             +        +  D+   +  P     ++++R+  
Sbjct: 417 LVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFELVEPLRLLFKDEVRAVG 471

Query: 182 LQRNIS 187
            +  + 
Sbjct: 472 RELGLP 477


>gi|326569032|gb|EGE19101.1| GMP synthase [Moraxella catarrhalis BC1]
 gi|326575516|gb|EGE25441.1| GMP synthase [Moraxella catarrhalis 101P30B1]
          Length = 519

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 215 LKNQIGNQKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLNEGDQVM 268

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
                   + I   V+   +       +A             RE       E  K     
Sbjct: 269 --QMFAENMGI--RVIRADSEARFLNALAGVSDPEAKRKIIGREFIEVFSEEARKLDGVK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 325 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLAFELVEPLRDLFKDEVRKL 381

Query: 181 LLQRNISW 188
            +   I  
Sbjct: 382 GVALGIPH 389


>gi|297624808|ref|YP_003706242.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Truepera radiovictrix DSM 17093]
 gi|297165988|gb|ADI15699.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Truepera radiovictrix DSM 17093]
          Length = 372

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 59/222 (26%), Gaps = 59/222 (26%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSM---GLL---------IALHSVLSDRSFG 49
            L+P  ++            +L A+SGG DS     LL           L     DR  G
Sbjct: 1   MLAPSPTLEPQTTDAAPKGRVLCAMSGGVDSSLAAALLKEAGYAVQGAMLRFWPDDRPKG 60

Query: 50  KIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL-------MAAA 102
                           A  + R V+D    + +   ++  +    +  +        A  
Sbjct: 61  AFDLCC-------SPDAAFDARRVAD---AIDVPFYLLDAREQFDEVVISPFVPTYEAGR 110

Query: 103 ---------REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM 153
                    RE ++    + A+ +    I T H             +R     G+ L   
Sbjct: 111 TPNPCVWCNREIKFGTFLKKARRLGCDYIATGH-----------YVRRVDGPGGVELHRG 159

Query: 154 CD----------TILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            D           +   +   +  P     +  +R     R 
Sbjct: 160 EDDTKDQTYFLWALERSILPHLLFPLGALSKTQVRELAEARG 201


>gi|330340409|ref|NP_001193365.1| GMP synthase [Bos taurus]
 gi|296491166|gb|DAA33239.1| guanine monphosphate synthetase [Bos taurus]
          Length = 699

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE +R  ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R 
Sbjct: 230 IECIRE-IKEGVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR- 282

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
             K E + V +   +L I   V++  +S
Sbjct: 283 --KRESQSVEEALRKLGIQVKVINAAHS 308


>gi|83405734|gb|AAI11274.1| GMPS protein [Bos taurus]
          Length = 704

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE +R  ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R 
Sbjct: 235 IECIRE-IKEGVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR- 287

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
             K E + V +   +L I   V++  +S
Sbjct: 288 --KRESQSVEEALRKLGIQVKVINAAHS 313


>gi|327266954|ref|XP_003218268.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Anolis
           carolinensis]
          Length = 707

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           +E +R  ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R 
Sbjct: 238 LECIRD-IKEKVGSSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR- 290

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVS 88
             K E + V +   +L I   VV+
Sbjct: 291 --KRESQSVEEALKKLGIQVKVVN 312


>gi|320101712|ref|YP_004177303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Isosphaera pallida ATCC 43644]
 gi|319748994|gb|ADV60754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Isosphaera pallida ATCC 43644]
          Length = 401

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 28/190 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----AKDEVRYVSDV 76
            +++A+SGG DS      L +   D     ++ + +  D   R      ++ +      V
Sbjct: 5   RVVLAMSGGVDSSVAAGLLKNQGYDVVGLFMR-TGVHFDDPTRRAKTCCSQFDALDAQAV 63

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREAR---------------YALISEHAKTINATL 121
             RL I    + ++    +          R               +  +  + K + A  
Sbjct: 64  ADRLDIPFHALDFEADFGRIMEDFTEEYLRGRTPNPCVMCNIWLKFGKLWAYGKKVGADF 123

Query: 122 IMTAHTFD-DQLETVYMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           + T H     Q E+   R  R      ++   LSG+   IL  +      P     +E+I
Sbjct: 124 VATGHYARVVQDESGRPRIARGVDRAKDQSYVLSGVRREILQRM----LLPVGGFTKEEI 179

Query: 178 RSFLLQRNIS 187
           R+     N+ 
Sbjct: 180 RAKARDWNLP 189


>gi|302344576|ref|YP_003809105.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfarculus baarsii DSM 2075]
 gi|301641189|gb|ADK86511.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfarculus baarsii DSM 2075]
          Length = 340

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 50/192 (26%), Gaps = 42/192 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A I VA+SGG DS    + L     +     +   A           +  +   ++    
Sbjct: 2   ARIAVALSGGVDSTVAALMLRRAGHEVIGLTLALGA---------GPRRALTEAAEAARA 52

Query: 80  LRIAHSVVSWKNSKPQT---------------GLMAAAREARYA-LISEHAKTINATLIM 123
           L + H V+    +  +                   A    A     +   A+      + 
Sbjct: 53  LGLTHQVIDVAAAFERAVIAPAARAYAAGRTPNPCAVCNAALKIPALWRAAQAFGCQALA 112

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMC--------DTILYDLNLWISRPFLRCRRE 175
           T H           R  R      +  +             +   L   +  P     ++
Sbjct: 113 TGHYA---------RLARLGGRPVLARAADAAKSQAYFLARLRPALLERLIFPLGGLTKD 163

Query: 176 DIRSFLLQRNIS 187
           ++R    +  ++
Sbjct: 164 EVRRVARESGLA 175


>gi|255994055|ref|ZP_05427190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saphenum ATCC 49989]
 gi|255993723|gb|EEU03812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium saphenum ATCC 49989]
          Length = 348

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 53/195 (27%), Gaps = 41/195 (21%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L     + V  SGG DS    + L                +     LR    +++  + 
Sbjct: 3   RLGDKTKVAVGFSGGVDSTAACLLLKE-------KGYDVHPVY----LRMGEAEDISELK 51

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------------------ALISEHAKT 116
            + + + +   V+   +    + +     +  Y                    + + A  
Sbjct: 52  KIANDIGLELKVLDLTDRFNNSVVDNF--KKAYMNGMTPNPCIVCNPLVKFRGLMDFADD 109

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN----LWISRPFLRC 172
               LI T H        +          +G         +LY L+      +  P    
Sbjct: 110 NGIDLIATGHYAR-----IVKNGDNPVLCRGRNAQKDQSYMLYGLDSNVFERLILPLGEY 164

Query: 173 R-REDIRSFLLQRNI 186
             +EDIR+ L    I
Sbjct: 165 GNKEDIRNILRTNEI 179


>gi|149278805|ref|ZP_01884940.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pedobacter sp. BAL39]
 gi|149230424|gb|EDM35808.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pedobacter sp. BAL39]
          Length = 509

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 23/198 (11%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           L+ +E+    ++  +    +++A+SGG DS    I LH  +            I VD+  
Sbjct: 197 LAFVETTIADLKEKLGDDKVVLALSGGVDSSVAAILLHKAIGK------NLHCIFVDNGL 250

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISE 112
           LR   KDE   V +    L +    V  K          + P+    A  R        E
Sbjct: 251 LR---KDEYASVLEQYKHLGLNIKGVDAKERFLSQLAGVTDPELKRKAIGRVFIEVFDDE 307

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +  +   +     + D +E++ ++      +    + G+ D     + L +  P    
Sbjct: 308 AHQVQDVKWLAQGTIYPDVIESISVKGPSATIKSHHNVGGLPD----FMKLKVVEPLNTL 363

Query: 173 RREDIRSFLLQRNISWCE 190
            ++++R       +    
Sbjct: 364 FKDEVRRVGTSLGLEHFI 381


>gi|311746884|ref|ZP_07720669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Algoriphagus sp. PR1]
 gi|126578570|gb|EAZ82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Algoriphagus sp. PR1]
          Length = 403

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 25/132 (18%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHC-LRETAKDEV 70
           +     ++V +SGG DS      L     +            ++++ + C   E + D +
Sbjct: 1   MKTKPRVVVGLSGGVDSSVAAHLLLEQGYEVIGMFMKNWHDESVTISNECPWMEDSTDAM 60

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGL-----MAAA-----------REARYALISEHA 114
                V  +L I    +       +  +        A           RE ++ +  + A
Sbjct: 61  L----VAEKLGIPFQAIDLSEEYRERIVDYMFGEYKAGRTPNPDILCNREIKFDIFLKAA 116

Query: 115 KTINATLIMTAH 126
           + + A  + T H
Sbjct: 117 QKLKADFVATGH 128


>gi|22298784|ref|NP_682031.1| hypothetical protein tll1241 [Thermosynechococcus elongatus BP-1]
 gi|22294965|dbj|BAC08793.1| tll1241 [Thermosynechococcus elongatus BP-1]
          Length = 277

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 59/200 (29%), Gaps = 44/200 (22%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +  + ++R  +  L      L+A SGG DS  +      VL DR+   +  +A+    
Sbjct: 2   MGVEKLAALRNLIAELDRA---LIAYSGGIDSTLVAKVAQDVLGDRA---VAVTAV---- 51

Query: 61  CLRET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALIS 111
               +   A  E   +    + + I H ++     +               +   +  + 
Sbjct: 52  --SPSLFPADLEDARIQ--AAAIGIRHELIETHELENPNYATNPVNRCYFCKSELHDRLR 107

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF-- 169
           E A+      ++     DD                   L      I       +  P   
Sbjct: 108 ELAQAWGYDYVLDGVNADD-------------------LQDYRPGIAAAKERGVRSPLAE 148

Query: 170 LRCRREDIRSFLLQRNISWC 189
           +   + ++R+      + W 
Sbjct: 149 VGISKLEVRAIAKSLGLPWW 168


>gi|310826072|ref|YP_003958429.1| hypothetical protein ELI_0450 [Eubacterium limosum KIST612]
 gi|308737806|gb|ADO35466.1| hypothetical protein ELI_0450 [Eubacterium limosum KIST612]
          Length = 271

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 42/193 (21%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-- 62
            ++S+R  +R    P    +A SGG DS  LL      +  R    +     +V+  +  
Sbjct: 11  KLDSLRDVIRGYEKP---CIAFSGGVDSTLLLRV---AVETRGAAAVPM---TVNGSMMP 61

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL------ISEHAKT 116
           R    D       +   +  +  V+          +   ++   Y        I  HA+ 
Sbjct: 62  RSEFGD----AKALAQSMGASLCVLDVDVFSVPEFVENGSQRCYYCKKNIFTQIKGHAQE 117

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRR 174
           +   +I      DD      +   R       GL  + + +       +  PF+     +
Sbjct: 118 LGCDVIFDGSNLDD------LDDYRP------GLLALEEMM-------VVSPFIKAGLTK 158

Query: 175 EDIRSFLLQRNIS 187
           +DIR       + 
Sbjct: 159 QDIRGLSAFYGLP 171


>gi|257463089|ref|ZP_05627490.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D12]
 gi|317060688|ref|ZP_07925173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
 gi|313686364|gb|EFS23199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D12]
          Length = 345

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 56/194 (28%), Gaps = 34/194 (17%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS--VDHCLRETAKDEVRYVSDV 76
              +++ +SGG DS      L            +  A+   V H   E  + E++    +
Sbjct: 2   KEKVILGMSGGVDSAVAAYLLQK-------EGYEVIAVHFSV-HNT-EATQKELQDCQKI 52

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINAT 120
             +  +     S +    +  +     E                 ++ L+ + A+   A 
Sbjct: 53  ADKFSLTLYSYSLEKEFREKIISYYLSETGKGKTPSPCPLCDDSIKFHLLFQEAEKRKAN 112

Query: 121 LIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            + T H    + ++   T  +  +    +       M   +       I  P     + +
Sbjct: 113 YVATGHYASISRNNICNTTLLEVKHHIHKDQ---CYMLYRLSPKKLNKILFPLASLEKAE 169

Query: 177 IRSFLLQRNISWCE 190
           +R       +   E
Sbjct: 170 VRELARDIGLFVSE 183


>gi|167770719|ref|ZP_02442772.1| hypothetical protein ANACOL_02065 [Anaerotruncus colihominis DSM
           17241]
 gi|167667314|gb|EDS11444.1| hypothetical protein ANACOL_02065 [Anaerotruncus colihominis DSM
           17241]
          Length = 248

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 48/181 (26%), Gaps = 40/181 (22%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYV 73
                 + VA SGG DS  LL A  +             A  +    +      D  R+V
Sbjct: 7   FAEHPRVAVAFSGGVDSAYLLYAAKT-------AGCDVHAYFIHSQFQPRFELDDTQRFV 59

Query: 74  SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                 L +  +V+              T      + A +  + + A+     ++     
Sbjct: 60  ----EMLHVPLTVLDCDVLSDPAVCANDTLRCYYCKRALFTRLWQAARADGYDVLCDGTN 115

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRN 185
             D+                   +        D  L +  P       + DIR+   Q  
Sbjct: 116 ASDEA------------------ADRPGMRALDE-LEVLSPLRICGLTKTDIRALSKQAG 156

Query: 186 I 186
           +
Sbjct: 157 L 157


>gi|218508534|ref|ZP_03506412.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Rhizobium etli Brasil 5]
          Length = 347

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 50/134 (37%), Gaps = 20/134 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++ A+SGG DS    + +H  + D      + + I VDH L R   KDE  
Sbjct: 216 IRKQVGDKRVICALSGGVDSSVAALLIHEAVGD------QLTCILVDHGLMR---KDEAA 266

Query: 72  YVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +      L + H   S +        S P+T      R        E  K   A  
Sbjct: 267 NVVAMFREHYNLHLLHVDASDRFIGELEGVSDPETKRKIIGRLFIETFEEEAKKLGGADF 326

Query: 122 IMTAHTFDDQLETV 135
           +     + D +E+V
Sbjct: 327 LGQGTLYPDVIESV 340


>gi|255530904|ref|YP_003091276.1| GMP synthase [Pedobacter heparinus DSM 2366]
 gi|255343888|gb|ACU03214.1| GMP synthase, large subunit [Pedobacter heparinus DSM 2366]
          Length = 508

 Score = 47.2 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 65/188 (34%), Gaps = 23/188 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +    +++A+SGG DS    I LH  +            I VD+  LR   KDE  
Sbjct: 206 LKEKLGNDKVVLALSGGVDSSVAAILLHKAIGK------NLHCIFVDNGLLR---KDEYA 256

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V +    L +    V  K+         S P+    A  R        E  +  +   +
Sbjct: 257 AVLEQYKHLGLNIKGVDAKDRFLSQLAGVSDPELKRKAIGRVFIEVFDDEAHQVQDVKWL 316

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ D     + L +  P     ++++R    
Sbjct: 317 AQGTIYPDIIESVSVKGPSATIKSHHNVGGLPD----FMKLKVVEPLNTLFKDEVRRVGT 372

Query: 183 QRNISWCE 190
              +    
Sbjct: 373 SLGLEHFI 380


>gi|227541810|ref|ZP_03971859.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182253|gb|EEI63225.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 609

 Score = 47.2 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 64/186 (34%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKD--E 69
           VR  +     +  +SGG DS     A+ + +  R+ G  + + + VDH L R   +   E
Sbjct: 303 VRQQIGDGRAICGLSGGVDS-----AVAAAIVQRAIGD-RLTCVFVDHGLLRAGERQQVE 356

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------R--YALISEHAKTINATL 121
             +V    ++L       ++ +         A R+A      R     ++      +   
Sbjct: 357 EDFVKATGAKLVTVDESEAFLSKLAGVTEPEAKRKAIGAEFIRSFERAVAGVLDGQDVGF 416

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+             +        +  D+   +  P     ++++R+  
Sbjct: 417 LVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFELVEPLRLLFKDEVRAVG 471

Query: 182 LQRNIS 187
            +  + 
Sbjct: 472 RELGLP 477


>gi|169795184|ref|YP_001712977.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AYE]
 gi|213158152|ref|YP_002320203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB0057]
 gi|215482732|ref|YP_002324930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB307-0294]
 gi|239501147|ref|ZP_04660457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB900]
 gi|260556664|ref|ZP_05828882.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606]
 gi|301346855|ref|ZP_07227596.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB056]
 gi|301511134|ref|ZP_07236371.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB058]
 gi|301596413|ref|ZP_07241421.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB059]
 gi|205811029|sp|B0VBY5|MNMA_ACIBY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205815008|sp|A3M7G3|MNMA_ACIBT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226704765|sp|B7GZ21|MNMA_ACIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226704766|sp|B7I4K8|MNMA_ACIB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169148111|emb|CAM85974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AYE]
 gi|213057312|gb|ACJ42214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB0057]
 gi|213987036|gb|ACJ57335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter baumannii AB307-0294]
 gi|260409923|gb|EEX03223.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606]
          Length = 377

 Score = 47.2 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 40/197 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V  ++ I     ++                AA R          E ++    +HA T+
Sbjct: 56  QAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTL 115

Query: 118 NATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H    + ET        Y    R           +      ++N  +  P  
Sbjct: 116 GADFIATGHYAR-RAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLF-PVG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    + +++
Sbjct: 174 EIEKPEVRRIAEELDLA 190


>gi|120436568|ref|YP_862254.1| tRNA methyl transferase [Gramella forsetii KT0803]
 gi|205816859|sp|A0M3J2|MNMA_GRAFK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117578718|emb|CAL67187.1| tRNA methyl transferase [Gramella forsetii KT0803]
          Length = 395

 Score = 47.2 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 27/129 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHCLRETAKD--EVRYV 73
             ++V +SGG DS      L     +            ++++ D C      D  +   V
Sbjct: 2   KKVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDSVTISDEC--PWLDDSNDAMMV 59

Query: 74  SDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAKTI 117
           +D   +L I    V       +                       RE ++ +  + A ++
Sbjct: 60  AD---KLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSL 116

Query: 118 NATLIMTAH 126
            A  + T H
Sbjct: 117 GADYVATGH 125


>gi|187736084|ref|YP_001878196.1| ExsB family protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426136|gb|ACD05415.1| ExsB family protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 271

 Score = 47.2 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 66/196 (33%), Gaps = 47/196 (23%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +P E +R     L+    I VA+SGG DS  LL A   +L               DHCL 
Sbjct: 7   TPFERLRAV---LLPRKRIAVALSGGLDSSVLLAAAVRILGA-------------DHCLA 50

Query: 64  ETAK------DEVRYVSDVCSRLRIAHSVVSWKNSKPQTG----LMAAAREARYALISEH 113
            TA+      +EVR  + +C RL +    +++                 + A ++ ++  
Sbjct: 51  LTARTPYVMEEEVRDSTALCRRLGVRQEKLAFPILPALANNPPLRCYLCKHALFSSLAAR 110

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A  +   L+      DD                   L            L I  PFL   
Sbjct: 111 AAEMGFPLLADGSNLDD-------------------LDDYRPGRKALQELGIPSPFLEAS 151

Query: 174 --REDIRSFLLQRNIS 187
             +EDIR    +  + 
Sbjct: 152 MDKEDIRRLACRLGLP 167


>gi|332886244|gb|EGK06488.1| GMP synthase [Dysgonomonas mossii DSM 22836]
          Length = 506

 Score = 47.2 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S I++    ++  +    +++A+SGG DS    + L+  +          + + VDH L
Sbjct: 197 SFIDTTVAELKEQLGDDKVILALSGGVDSSVTAVLLNKAIGK------NLTCVFVDHGL 249


>gi|296116400|ref|ZP_06835014.1| GMP synthase [Gluconacetobacter hansenii ATCC 23769]
 gi|295976993|gb|EFG83757.1| GMP synthase [Gluconacetobacter hansenii ATCC 23769]
          Length = 532

 Score = 47.2 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + +      + + I VD   LR    DEV 
Sbjct: 228 IREQVGKGRVICGLSGGVDSSVAAVLIHQAIGE------QLTCIFVDPGILRAGEADEV- 280

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            +     R  I        +         S P+       R        E AK   A  +
Sbjct: 281 -IKTFRDRFNIHLIHRDASDLFLSALEGVSDPEIKRKTIGRLFIEVFEEEAAKLGGAEFL 339

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + + +  P     ++++R+   
Sbjct: 340 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMKLVEPLRELFKDEVRALGR 396

Query: 183 QRNIS 187
           + +I 
Sbjct: 397 ELDIP 401


>gi|254480686|ref|ZP_05093933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2148]
 gi|214039269|gb|EEB79929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine gamma proteobacterium HTCC2148]
          Length = 363

 Score = 47.2 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 59/203 (29%), Gaps = 46/203 (22%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
           SL     ++V +SGG DS    + L           +K           E        AK
Sbjct: 2   SLNASKKVIVGMSGGVDSSVSALLLKEQGYAVEGLFMK--------NWEEDDGTEYCTAK 53

Query: 68  DEVRYVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAA-----------REARYALIS 111
           ++      V  +L I           W N          A           RE ++    
Sbjct: 54  EDFADAQAVADKLGIKLHGANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFKAFL 113

Query: 112 EHAKTINATLIMTAH-TFDDQLETVYMRSQRDYAEKGMGLSGMCDT------ILYDLNLW 164
           ++A T+ A LI T H T         +      A    GL    D       + +     
Sbjct: 114 DYALTLGADLIATGHYTR--------LGLAAGQATLLKGLDPNKDQSYFLHAVGHRELAK 165

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
              P     + ++RS   + +++
Sbjct: 166 TLFPVGDIEKPEVRSLAEEYDLA 188


>gi|332818178|ref|XP_003310107.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] isoform 2 [Pan
           troglodytes]
          Length = 594

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 131 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQEQVIAVHIDNGFMR---KRESQ 182

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 183 SVEEALKKLGIQVKVINAAHS 203


>gi|332818176|ref|XP_003310106.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] isoform 1 [Pan
           troglodytes]
          Length = 693

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQEQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|314935047|ref|ZP_07842406.1| GMP synthase [Staphylococcus caprae C87]
 gi|313652977|gb|EFS16740.1| GMP synthase [Staphylococcus caprae C87]
          Length = 513

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 26/182 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYV-S 74
           V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D    V  
Sbjct: 216 VGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD---MVME 266

Query: 75  DVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  +    V+ ++         S P+        E  Y    E AK  +   +   
Sbjct: 267 QFGEGFDMNIIRVNAQDRFMDKLKGVSDPEQKRKIIGNEFVYVFDDEAAKLTDVDFLAQG 326

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E            + +        +  D+   +  P     ++++R+  ++  
Sbjct: 327 TLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALGIELG 380

Query: 186 IS 187
           I 
Sbjct: 381 IP 382


>gi|261210711|ref|ZP_05925003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC341]
 gi|260840196|gb|EEX66776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. RC341]
          Length = 371

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 11  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 62

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 63  AQAVCDKLDIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 122

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 123 VLDADYIAMGH 133


>gi|271501561|ref|YP_003334587.1| GMP synthase large subunit [Dickeya dadantii Ech586]
 gi|270345116|gb|ACZ77881.1| GMP synthase, large subunit [Dickeya dadantii Ech586]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  + DR       + + VD+  LR     E  
Sbjct: 221 IRQQVGGDKVILGLSGGVDSSVTALLLHRAIGDR------LTCVFVDNGLLRLN---EAE 271

Query: 72  YVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V +       +    V  +N           P+       R        E  K  +   
Sbjct: 272 QVMEMFGDEFGLNIVHVQAENRFLSALAGIDDPEAKRKTIGRVFVDVFDEEAGKLTDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  D+ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPDDMALGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|223043330|ref|ZP_03613376.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Staphylococcus capitis SK14]
 gi|222443119|gb|EEE49218.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Staphylococcus capitis SK14]
          Length = 513

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 26/182 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYV-S 74
           V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D    V  
Sbjct: 216 VGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD---MVME 266

Query: 75  DVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  +    V+ ++         S P+        E  Y    E AK  +   +   
Sbjct: 267 QFGEGFDMNIIRVNAQDRFMDKLKGVSDPEQKRKIIGNEFVYVFDDEAAKLTDVDFLAQG 326

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E            + +        +  D+   +  P     ++++R+  ++  
Sbjct: 327 TLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALGIELG 380

Query: 186 IS 187
           I 
Sbjct: 381 IP 382


>gi|196049679|pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
 gi|196049680|pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
          Length = 697

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 234 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQEQVIAVHIDNGFMR---KRESQ 285

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 286 SVEEALKKLGIQVKVINAAHS 306


>gi|194374669|dbj|BAG62449.1| unnamed protein product [Homo sapiens]
          Length = 642

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 179 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQEQVIAVHIDNGFMR---KRESQ 230

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 231 SVEEALKKLGIQVKVINAAHS 251


>gi|160934354|ref|ZP_02081741.1| hypothetical protein CLOLEP_03225 [Clostridium leptum DSM 753]
 gi|156867027|gb|EDO60399.1| hypothetical protein CLOLEP_03225 [Clostridium leptum DSM 753]
          Length = 515

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +    +L A+SGG DS    + +H  +        + + I VDH  LR+   D+V 
Sbjct: 213 LKEKIGDKKVLCALSGGVDSSVAALLVHKAVGK------QLTCIFVDHGLLRKDEGDQVE 266

Query: 72  YV 73
            V
Sbjct: 267 TV 268


>gi|62898359|dbj|BAD97119.1| guanine monophosphate synthetase variant [Homo sapiens]
          Length = 693

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQEQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|12483930|gb|AAG53900.1| MLL/GMPS fusion protein [Homo sapiens]
          Length = 551

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 363 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQEQVIAVHIDNGFMR---KRESQ 414

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 415 SVEEALKKLGIQVKVINAAHS 435


>gi|197099468|ref|NP_001124563.1| GMP synthase [glutamine-hydrolyzing] [Pongo abelii]
 gi|75041859|sp|Q5RA96|GUAA_PONAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|55729155|emb|CAH91314.1| hypothetical protein [Pongo abelii]
          Length = 693

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQEQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|45358224|ref|NP_987781.1| putative ATP binding-like protein [Methanococcus maripaludis S2]
 gi|44920981|emb|CAF30217.1| Putative ATP binding related protein [Methanococcus maripaludis S2]
          Length = 291

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRLR 81
           ++  SGG DS+  L  L   L  R         ++VD        +E      +V     
Sbjct: 70  ILGFSGGKDSVVALYLLVKELRIRPL------CVTVD---NGYLAEEALTNCKNVAKYFG 120

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   V++   +K                 +     + + A+  N   I+T H
Sbjct: 121 VDWLVINKDFTKFFKETISKGESPCRVCSDMNMHELWQFARQTNIDTIVTGH 172


>gi|4504035|ref|NP_003866.1| GMP synthase [glutamine-hydrolyzing] [Homo sapiens]
 gi|1708072|sp|P49915|GUAA_HUMAN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|595410|gb|AAA60331.1| guanosine 5'-monophosphate synthetase [Homo sapiens]
 gi|15082535|gb|AAH12178.1| Guanine monphosphate synthetase [Homo sapiens]
 gi|119599147|gb|EAW78741.1| guanine monphosphate synthetase, isoform CRA_b [Homo sapiens]
 gi|124000223|gb|ABM87620.1| guanine monphosphate synthetase [synthetic construct]
 gi|157929256|gb|ABW03913.1| guanine monphosphate synthetase [synthetic construct]
 gi|158256440|dbj|BAF84193.1| unnamed protein product [Homo sapiens]
 gi|164691081|dbj|BAF98723.1| unnamed protein product [Homo sapiens]
          Length = 693

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQEQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|327189841|gb|EGE56979.1| succinoglycan biosynthesis transcriptional regulator protein
           [Rhizobium etli CNPAF512]
          Length = 236

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS+ L   + +              +S D+  R   + E+ + +   +RL 
Sbjct: 4   IVV-CSGGLDSVSLAHKMAAEQQL-------IGLVSFDYGQRH--RKELDFAARCAARLA 53

Query: 82  IAHSVVSWKNSKPQTGLMA 100
           + H ++            A
Sbjct: 54  VPHHIIDIAAIGGHLSGSA 72


>gi|47210539|emb|CAF90658.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 720

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 14/82 (17%)

Query: 13  VRSLVYPAHILVA-----VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETA 66
           +R  V  + +LV+     +SGG DS      L+  L+       +  A+ +D+   R   
Sbjct: 227 IREKVGKSKVLVSGAEVLLSGGVDSTVCTALLNKALNQE-----QVIAVHIDNGFMR--- 278

Query: 67  KDEVRYVSDVCSRLRIAHSVVS 88
           K E + V +  ++L I   VV+
Sbjct: 279 KRESQSVEEALTKLGIKLKVVN 300


>gi|16264811|ref|NP_437603.1| hypothetical protein SM_b20940 [Sinorhizobium meliloti 1021]
 gi|307308043|ref|ZP_07587761.1| exsB protein [Sinorhizobium meliloti BL225C]
 gi|307319888|ref|ZP_07599311.1| exsB protein [Sinorhizobium meliloti AK83]
 gi|81811844|sp|Q92UN9|QUEC_RHIME RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|15140949|emb|CAC49463.1| probable succinoglycan biosynthesis regulator [Sinorhizobium
          meliloti 1021]
 gi|306894428|gb|EFN25191.1| exsB protein [Sinorhizobium meliloti AK83]
 gi|306901447|gb|EFN32051.1| exsB protein [Sinorhizobium meliloti BL225C]
          Length = 236

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I++  SGG DS+ L    H V +++    +    +S D+  R   + E+ + +    RL 
Sbjct: 4  IVI-CSGGLDSVSLA---HKVAAEQELSGL----LSFDYGQRH--RKELDFAAACARRLG 53

Query: 82 IAHSVVSWKNSKPQ 95
          + H ++  +    +
Sbjct: 54 VPHQIIDIREIGRR 67


>gi|291556233|emb|CBL33350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium siraeum V10Sc8a]
          Length = 358

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 56/208 (26%), Gaps = 62/208 (29%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--------CLRETAKDEVRY 72
            + +A+SGG DS   L+ L     D S   +K       H         L   +  ++  
Sbjct: 3   KLAIAMSGGVDSSVALVLLKD-KYDVSGYTLKL------HDSRGTDDSGL-CGSASDIED 54

Query: 73  VSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAARE-ARYALISEHAKT 116
              + ++  + H ++  +                S           E  ++  + +  K 
Sbjct: 55  AKAIAAKFGVPHYLLDMRELFSKTVQKSFTESYLSGRTPNPCVECNETIKFGALLDAVKK 114

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI-------LYDLNLWISR-- 167
                I T H              R   ++  G   +   I         D +  + R  
Sbjct: 115 QGINHIATGH------------YVRSCYDEKSGRWLLKKAINADGTSNAKDQSYVLYRLS 162

Query: 168 ---------PFLRCRREDIRSFLLQRNI 186
                    P     +++IR       +
Sbjct: 163 QQQLAASVFPLGEMTKDEIRHIAADSGL 190


>gi|241667518|ref|ZP_04755096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254876064|ref|ZP_05248774.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254842085|gb|EET20499.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 359

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 58/207 (28%), Gaps = 49/207 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             I+V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKIIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKT 116
              VC  + I    +++                 A R          E ++     +   
Sbjct: 56  AQAVCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHT-----FDD---QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +    I T H       DD   Q     ++   D  ++   L  +    L         P
Sbjct: 116 LGGDYIATGHYARTKVADDGSVQ----LVKGLDDSKDQTYFLYTLGQEQLKQTMF----P 167

Query: 169 FLRCRREDIRSFLLQRNISWCE--DPS 193
                +  +R    + N+   +  D +
Sbjct: 168 IGDIEKSRVREIAKENNLVTFDKKDST 194


>gi|312865121|ref|ZP_07725349.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus downei F0415]
 gi|311099232|gb|EFQ57448.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus downei F0415]
          Length = 517

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D   
Sbjct: 216 IRQTVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKNEGD--- 266

Query: 72  YVSDVCSRLR--IAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTIN 118
               V + L      +++    S+           P+        E  Y    E +K   
Sbjct: 267 ---QVMNMLGGNFGLNIIRVDASERFLKLLAGVDDPEKKRKIIGNEFVYVFDDEASKLKG 323

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 324 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFQLIEPLDTLFKDEVR 377

Query: 179 SFLLQRN----ISWC 189
           +          I W 
Sbjct: 378 ALGTALGMPDEIVWR 392


>gi|291514578|emb|CBK63788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alistipes shahii WAL 8301]
          Length = 399

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 54/197 (27%), Gaps = 37/197 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H-------CLRETAKDEVR 71
           A +++ +SGG DS      L      +  G        ++ H              D V 
Sbjct: 2   ARVVIGLSGGVDSSVAAWLL------KEQGHEVVGLFMINWHDTTGTLEGDCPWHDDRV- 54

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAK 115
           +   V  +L I   VV                               RE ++ +    A 
Sbjct: 55  FAELVARKLDIELHVVDLSADYRTRVVDYMFAEYERGRTPNPDVLCNREIKFDVFLREAL 114

Query: 116 TINATLIMTAHTFDDQLETV-----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + A  + T H      ET+       +              +C      L+  +  P  
Sbjct: 115 KLGADYVATGHYCRKAEETLPDGRTIHKLLAGSDPNKDQSYFLCQLSQEQLSRALF-PVG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    ++ ++
Sbjct: 174 GLLKPEVRRIAEEQGLA 190


>gi|271962728|ref|YP_003336924.1| GMP synthase C terminal domain-containing protein
           [Streptosporangium roseum DSM 43021]
 gi|270505903|gb|ACZ84181.1| GMP synthase C terminal domain protein [Streptosporangium roseum
           DSM 43021]
          Length = 523

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 29/197 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             +E+VR     +      + A+SGG DS      +   + DR       + + VDH  L
Sbjct: 211 DAVEAVRA---QIGPEGRAICALSGGVDSAVAAAMVQRAIGDR------LTCVFVDHGLL 261

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTI 117
           R+   ++V    D  +   +   VV       K     T      +      I       
Sbjct: 262 RKGEAEQVE--RDFVAVTGVKLRVVDAQERFLKALDGVTDPEEKRKIIGREFIRVFEDEQ 319

Query: 118 NA-------TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A         ++    + D +E+             +        +  DL   +  P  
Sbjct: 320 RAIIADGPVDFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDLQFSLVEPLR 374

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  + 
Sbjct: 375 ALFKDEVRRAGEELGLP 391


>gi|260592231|ref|ZP_05857689.1| GMP synthase [Prevotella veroralis F0319]
 gi|260535865|gb|EEX18482.1| GMP synthase [Prevotella veroralis F0319]
          Length = 514

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 70/199 (35%), Gaps = 35/199 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +R  V    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 198 SFVESAVQEIREQVGNDRVILGLSGGVDSSVCATLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKNSK-----------PQTGLMAAAREARYALI 110
           R+       +   V      +  +V+    S+           P+       R+      
Sbjct: 252 RKN-----EF-QKVMDAYKGLGLNVIGVDASEKFFKDLEGVSDPEEKRKIIGRDFVEVFN 305

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRP 168
           +E  K  +A  +     + D++E++        +  GM +        +  +++L +  P
Sbjct: 306 AEAKKITDAKWLAQGTIYPDRIESL--------SITGMVIKSHHNVGGLPKEMHLQLCEP 357

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R    +  + 
Sbjct: 358 LRWLFKDEVRRVGHEMGMP 376


>gi|119512160|ref|ZP_01631251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nodularia spumigena CCY9414]
 gi|119463191|gb|EAW44137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nodularia spumigena CCY9414]
          Length = 351

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 61/205 (29%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
             ++V +SGG DS      LH          +   +  G+             E   D  
Sbjct: 2   KKVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLMKGKGQCC----------SEGMID-- 49

Query: 71  RYVSDVCSRLRIAHSVVSWK-----------NSKPQTGL----MAAARE-------ARYA 108
              +D+C +L + H VV  +            +    G+     +   +        +YA
Sbjct: 50  --AADICEQLGVPHEVVDIREVFQTQIVDFLVTGYSAGITPLPCSQCNKTVKFGPMVQYA 107

Query: 109 LISEHAKTINATLIMTAHTFD---DQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLN 162
                 + ++   I T H      D+  T     +R+     ++   L  +   +L    
Sbjct: 108 -----REKLDCDRIATGHYAQINYDEA-TGRYQLLRAVDRNKDQSYFLYDLSQELLKAT- 160

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
                P  +  + D R    +  ++
Sbjct: 161 ---VFPLGKLDKADTRRIAAEYGLT 182


>gi|317490879|ref|ZP_07949315.1| GMP synthase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920426|gb|EFV41749.1| GMP synthase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAVVRLREQVGEDEVILGLSGGVDSSVTALLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V D    +  +    V  ++         + P+       R        E
Sbjct: 266 RLN---EGEQVMDMFGDKFGLNIIHVKAEDRFLNALAGINDPEAKRKTIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  N   +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ACKQPNVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|300814306|ref|ZP_07094578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511573|gb|EFK38801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 351

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 39/195 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               +++ +SGG DS    I L +   D      R++        + D+           
Sbjct: 2   KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWADDGICTATEDYMD--------- 52

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEHAK 115
            V  V S+L I +  V+++                  R          E ++     +A 
Sbjct: 53  -VVKVASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYAL 111

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +   I   H   T +   +T   R   +  ++   LS + +  L         P    
Sbjct: 112 NFDCDYIAMGHYARTKNIDGKTYLCRGLDNNKDQSYFLSRVTEDALKKT----LFPIGEL 167

Query: 173 RREDIRSFLLQRNIS 187
           +++ +R       +S
Sbjct: 168 QKDQVRKIAKDYGLS 182


>gi|134045397|ref|YP_001096883.1| PP-loop domain-containing protein [Methanococcus maripaludis C5]
 gi|132663022|gb|ABO34668.1| PP-loop domain protein [Methanococcus maripaludis C5]
          Length = 258

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 19/137 (13%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L    S+  F ++      ++VA SGG DS         ++S  +    K  A++VD+ 
Sbjct: 8   LLEKYNSLLEFFKN----KKVIVAYSGGVDST--------LISKIASDATKTLAVTVDNG 55

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWK--NSKPQTGLMAAAREARYALISEHAK---T 116
               +++ ++   D   +  I          N      L       +  +  E  K    
Sbjct: 56  F--FSENVIKKAEDCAKKYNIPQKTEKIDYLNEITSKNLENRCYNCKKRIAEELKKIKNE 113

Query: 117 INATLIMTAHTFDDQLE 133
           +N  +I+    +DD  E
Sbjct: 114 LNYDIIVDGTIYDDIFE 130


>gi|92114160|ref|YP_574088.1| ExsB [Chromohalobacter salexigens DSM 3043]
 gi|110816222|sp|Q1QVW9|QUEC_CHRSD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|91797250|gb|ABE59389.1| preQ(0) biosynthesis protein QueC [Chromohalobacter salexigens DSM
           3043]
          Length = 251

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 60/187 (32%), Gaps = 39/187 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS       ++VL        +  A+S  +  R + + E  +  DVC RL IAH 
Sbjct: 35  YSGGMDS-------YTVLHRALRAGFEVHALSFHYGQRHSRELETAH--DVCQRLGIAHQ 85

Query: 86  VVSWKNSKPQTGLMAA-------------AREARY-----------ALISEHAKTINATL 121
           VV  +      G  A              A                +L   HA  I A +
Sbjct: 86  VVDIRAIHGLIGNSALTDATQTMPDGDYDADNMAATVVPNRNMILLSLAIGHAVNIGANV 145

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
                   D +         D   + +        I     + I+ P+L   +E+I +  
Sbjct: 146 CFYGAHGGDHV------LYPDCRPEFVERMNDVAAIADFTPVRIAAPYLHASKEEILADG 199

Query: 182 LQRNISW 188
           L   + +
Sbjct: 200 LAMGLDY 206


>gi|325859994|ref|ZP_08173121.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella denticola CRIS 18C-A]
 gi|325482520|gb|EGC85526.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella denticola CRIS 18C-A]
          Length = 536

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +R  V    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 220 SFIESTVQEIRGQVGNDRVILGLSGGVDSSVCAVLLNKAIGK------NLTCIFVDHGML 273

Query: 63  RET 65
           R+ 
Sbjct: 274 RKN 276


>gi|189424960|ref|YP_001952137.1| GMP synthase [Geobacter lovleyi SZ]
 gi|189421219|gb|ACD95617.1| GMP synthase, large subunit [Geobacter lovleyi SZ]
          Length = 517

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 73/196 (37%), Gaps = 26/196 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE+    +R  V    ++ A+SGG DS  + + LH  + D      +   I V++  L
Sbjct: 205 NFIETEIAAIREKVGNGKVICALSGGVDSSVVAVLLHKAIGD------QLQCIFVNNGLL 258

Query: 63  RETAKDEVRYVSDVCSRL---RIAHSVVSWKNSKPQTGLMA-------AAREARYALISE 112
           R+    E   V ++ +R     + +   S +      G+            E  Y L  +
Sbjct: 259 RKG---EAEKVVNLFTRHFKINLDYVEASSRFLDKLKGITDPEQKRKIIGNEFIY-LFED 314

Query: 113 HAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            AK I     +     + D +E+V  +      +    + G+ D     + + +  P   
Sbjct: 315 EAKKIGTVDWLAQGTLYPDVIESVSTKGPSAVIKSHHNVGGLPD----RMKMKLIEPVRE 370

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +  + 
Sbjct: 371 LFKDEVRLLGKELGLP 386


>gi|307354521|ref|YP_003895572.1| GMP synthase large subunit [Methanoplanus petrolearius DSM 11571]
 gi|307157754|gb|ADN37134.1| GMP synthase, large subunit [Methanoplanus petrolearius DSM 11571]
          Length = 305

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 71/194 (36%), Gaps = 31/194 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE     +R   +   +++A+SGG DS        + L+ R+ G+    +I VD  L 
Sbjct: 6   KFIEQAIAEIREKSHGKKVVMALSGGVDSSV-----CAELARRAIGE-NLISIYVDTGLM 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAR---EARYALISEHA 114
           R+    E   + ++ S L +   VV      ++  K         +   E    +    A
Sbjct: 60  RKG---ETERIRELFSDLNL--QVVEAGEEFFEALKGVIDPEEKRKVIGEKFIRIFEREA 114

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRPFLRCR 173
           K   A  ++    + D +E          +E G+        + YD++   +  P +   
Sbjct: 115 KKTKAAYLLQGTIYPDIIE----------SEGGIKSHHNVGGLPYDIDFEGLIEPLIDLY 164

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 165 KDEVRDVAGALGLP 178


>gi|289616997|emb|CBI56280.1| unnamed protein product [Sordaria macrospora]
          Length = 520

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 16/181 (8%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R LV P   +L AVSGG DS      +   + DR      F A+ V++  +R    DE 
Sbjct: 217 IRDLVGPEGQVLGAVSGGVDSTVAAKLMKEAIGDR------FWAVLVNNGVMR---LDEC 267

Query: 71  RYV-SDVCSRLRIAHSVVSWKNS--KPQTGLM--AAAREARYALISEHAKTINATLIMTA 125
             V  D+   L I  +V+       +   GL      R+       +  K       +  
Sbjct: 268 EQVERDLKQHLGINLTVIDASKDFLEGLKGLHDPEQKRKFIGGKFIDSGKGTKIGFFLQG 327

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E++  +      +    + G+ + +     L +  P     ++++R       
Sbjct: 328 TLYPDVIESLSFKGPSATIKTHHNVGGLPERMTNGQGLQLIEPLRSLYKDEVRELGRTLG 387

Query: 186 I 186
           I
Sbjct: 388 I 388


>gi|226952213|ref|ZP_03822677.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Acinetobacter sp. ATCC 27244]
 gi|294648847|ref|ZP_06726303.1| GMP synthase [Acinetobacter haemolyticus ATCC 19194]
 gi|226837051|gb|EEH69434.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Acinetobacter sp. ATCC 27244]
 gi|292825238|gb|EFF83985.1| GMP synthase [Acinetobacter haemolyticus ATCC 19194]
          Length = 522

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LREQIGNEKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINAT 120
                   + I   V+     +           P+       RE       E  K     
Sbjct: 272 --QMFADNMGI--RVIRADAEERFLTALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPEDLAFDLVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|159028008|emb|CAO87968.1| trmU [Microcystis aeruginosa PCC 7806]
          Length = 352

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 61/201 (30%), Gaps = 53/201 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
             ++V +SGG DS     ALH+         +   +  G+                  + 
Sbjct: 2   GKVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLMKGKGQCC-----------SEGMVDA 50

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAA-----AREARYAL-----ISEH 113
            +   +C +L + H +V  +    +       +G  A        +   A+     +   
Sbjct: 51  AF---ICEQLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYA 107

Query: 114 AKTINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            +T+    I T H         +++ +   MR+     ++   L  +   +L        
Sbjct: 108 RETLETDTIATGHYARIRFSPENNRYQ--LMRAVDKNKDQSYFLYDLTQDVLRGT----L 161

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + + R    +  + 
Sbjct: 162 FPLGEQTKAETRRIAQEFGLK 182


>gi|149641234|ref|XP_001512299.1| PREDICTED: similar to guanosine 5-monophosphate synthetase, partial
           [Ornithorhynchus anatinus]
          Length = 631

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++     + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 168 IKERAGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 219

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   VV+  +S
Sbjct: 220 SVEEALKKLGIRVKVVNAAHS 240


>gi|147678886|ref|YP_001213101.1| GMP synthase [Pelotomaculum thermopropionicum SI]
 gi|146274983|dbj|BAF60732.1| hypothetical GMP synthase [Pelotomaculum thermopropionicum SI]
          Length = 513

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 63/197 (31%), Gaps = 30/197 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     V+  V     L A+SGG DS    + +H  + DR       + + V+H  L
Sbjct: 203 SFLERAVAEVQEQVGSGRALCALSGGVDSSVAAVLVHRAVGDR------LTCVFVNHGLL 256

Query: 63  RETAKDEVRYVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISE 112
           R+    E   V        ++ + +     +        + P+        E       +
Sbjct: 257 RKG---EAEQVQKTFKEKFKMNLIYVDARRRFLSRLAGVTDPEMKRKIIGEEFIRVFEDQ 313

Query: 113 HAKTINATLIMTAHTFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A       ++    + D +E  T      + +   G         +  D+   +  P  
Sbjct: 314 AAALGQVDFLVQGTLYPDVVESGTATAAVIKSHHNVGC--------LPGDMRFGLVEPLR 365

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  + 
Sbjct: 366 WLFKDEVRELGEEMGLP 382


>gi|322374426|ref|ZP_08048940.1| GMP synthase [Streptococcus sp. C300]
 gi|321279926|gb|EFX56965.1| GMP synthase [Streptococcus sp. C300]
          Length = 520

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 34/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+    E  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKG---EAD 269

Query: 72  YVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V D +  +  +  ++V    SK           P+        E  Y    E +K  + 
Sbjct: 270 QVMDMLGGKFGL--NIVKADASKRFLDKLAGVSDPEQKRKIIGNEFVYVFDDEASKLKDV 327

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +  D+   +  P     ++++R+
Sbjct: 328 KFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRA 381

Query: 180 FLLQRN----ISWC 189
              +      I W 
Sbjct: 382 LGTELGMPDHIVWR 395


>gi|270292845|ref|ZP_06199056.1| GMP synthase [Streptococcus sp. M143]
 gi|270278824|gb|EFA24670.1| GMP synthase [Streptococcus sp. M143]
          Length = 520

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 34/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+    E  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKG---EAD 269

Query: 72  YVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V D +  +  +  ++V    SK           P+        E  Y    E +K  + 
Sbjct: 270 QVMDMLGGKFGL--NIVKADASKRFLDKLAGVSDPEQKRKIIGNEFVYVFDDEASKLKDV 327

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +  D+   +  P     ++++R+
Sbjct: 328 KFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRA 381

Query: 180 FLLQRN----ISWC 189
              +      I W 
Sbjct: 382 LGTELGMPDHIVWR 395


>gi|260549713|ref|ZP_05823930.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624]
 gi|260407230|gb|EEX00706.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624]
          Length = 377

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 42/198 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--------DEVRY 72
            ++V +SGG DS      L           +K           E           +++  
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNW---------EEDDGTEYCTAMEDLAD 54

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
              V  ++ I     ++                AA R          E ++    +HA T
Sbjct: 55  AQAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMT 114

Query: 117 INATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  I T H    + ET        Y    R           +      ++N  +  P 
Sbjct: 115 LGADFIATGHYAR-RAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLF-PV 172

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R    + +++
Sbjct: 173 GEIEKPEVRRIAEELDLA 190


>gi|255534090|ref|YP_003094462.1| argininosuccinate synthase [Pedobacter heparinus DSM 2366]
 gi|255347074|gb|ACU06400.1| argininosuccinate synthase [Pedobacter heparinus DSM 2366]
          Length = 397

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 52/194 (26%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              +++A SGG D S         +  DR    ++  ++ V+      + +E++ +    
Sbjct: 2   KKKVVLAFSGGLDTS----FCCIYLAQDRG---LEVHSVIVNTG--GFSDEELKEIEKRA 52

Query: 78  SRLRIA-HSVVSWKNSKPQTGLM-----------------AAAREARYALISEHAKTINA 119
             L +A H+VV    +   + +                  +A R ++   I+ + K I A
Sbjct: 53  YALGVASHAVVDETENYYNSCIRYLVFGNVLKNATYPLSVSAERVSQATAIANYVKKIGA 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRR 174
             +  AH                    G G   +   +++++    + I  P   L+  R
Sbjct: 113 DYV--AH-----------------GSTGAGNDQVRFDMIFNIIIPEVEIITPIRDLKLSR 153

Query: 175 EDIRSFLLQRNISW 188
           E    +L    + +
Sbjct: 154 EAEIEYLNAHGVEY 167


>gi|224418922|ref|ZP_03656928.1| guanosine monophosphate synthetase GuaA [Helicobacter canadensis
           MIT 98-5491]
 gi|253827873|ref|ZP_04870758.1| GMP synthase [Helicobacter canadensis MIT 98-5491]
 gi|313142437|ref|ZP_07804630.1| GMP synthase [Helicobacter canadensis MIT 98-5491]
 gi|253511279|gb|EES89938.1| GMP synthase [Helicobacter canadensis MIT 98-5491]
 gi|313131468|gb|EFR49085.1| GMP synthase [Helicobacter canadensis MIT 98-5491]
          Length = 727

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 72/202 (35%), Gaps = 29/202 (14%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +    + S  F       P  +L AVSGG DS  +   L+  + +          I VD 
Sbjct: 409 LVCDHLTSCAFGHTDKAKPHKVLCAVSGGVDSSVVATLLYRAIGE------NLIPIFVDT 462

Query: 61  C-LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---ARY-------AL 109
             LR+  ++ V         LR+    +    S+   GL+   R+    R         +
Sbjct: 463 GLLRKGEREAVE--KMFRENLRVPLITI--DASEEFLGLLKGVRDPESKRKIIGETFIKV 518

Query: 110 ISEHAKTINAT----LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
               AK  NA      +     + D +E+V ++      +    + G+ D + ++    +
Sbjct: 519 FDGEAKKHNANGEIKFLAQGTLYPDVIESVSVKGPSKTIKSHHNVGGLPDWMKFE----L 574

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     ++++R+   +  + 
Sbjct: 575 IEPLRELFKDEVRALGRELGMP 596


>gi|154496175|ref|ZP_02034871.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC
           29799]
 gi|150274730|gb|EDN01794.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC
           29799]
          Length = 342

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 54/186 (29%), Gaps = 34/186 (18%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           + +SGG DS      L            +   + +D  L  T + +   V     RL I 
Sbjct: 2   LGLSGGVDSAVAAQLLSR--------DYEVHGLYLDIGLGGTGQADAAAV---AHRLDIP 50

Query: 84  HSVVSWKNS------KPQTGLMAAARE----AR------YALISEHAKTINATLIMTAHT 127
                 +         P      A R     AR      +  +   A+ I A  + T H 
Sbjct: 51  FHTADIRQELENQVCGPFAADYLAGRTPLPCARCNPTVKFPALLALAEEIGAEKVATGH- 109

Query: 128 FDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
                 T      R    KG+     S M   +  ++   +  P     +  +R+   Q 
Sbjct: 110 ---YARTALAPDGRVLLRKGLPANDQSYMLSRLPQNILQKVIFPLGDYEKTAVRAMAGQA 166

Query: 185 NISWCE 190
            +   +
Sbjct: 167 ELPVAD 172


>gi|23502820|ref|NP_698947.1| exsB protein [Brucella suis 1330]
 gi|161619890|ref|YP_001593777.1| exsB protein [Brucella canis ATCC 23365]
 gi|254704980|ref|ZP_05166808.1| exsB protein [Brucella suis bv. 3 str. 686]
 gi|260567546|ref|ZP_05838016.1| queuosine biosynthesis protein queC [Brucella suis bv. 4 str. 40]
 gi|261755681|ref|ZP_05999390.1| queuosine biosynthesis protein queC [Brucella suis bv. 3 str.
          686]
 gi|81751945|sp|Q8FYB3|QUEC_BRUSU RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189038898|sp|A9M959|QUEC_BRUC2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|23348844|gb|AAN30862.1| exsB protein [Brucella suis 1330]
 gi|161336701|gb|ABX63006.1| exsB protein [Brucella canis ATCC 23365]
 gi|260157064|gb|EEW92144.1| queuosine biosynthesis protein queC [Brucella suis bv. 4 str. 40]
 gi|261745434|gb|EEY33360.1| queuosine biosynthesis protein queC [Brucella suis bv. 3 str.
          686]
          Length = 232

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H + ++     +    +S D+  R   K E+ +      RL + H 
Sbjct: 7  CSGGLDSVSLA---HKMAAEHELTGL----LSFDYGQRH--KKELDFAQACAKRLGVPHQ 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDIR 62


>gi|331085021|ref|ZP_08334108.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408721|gb|EGG88186.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 357

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 39/136 (28%), Gaps = 36/136 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------ 72
              ++V +SGG DS      L     D     ++          ++  +           
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQI--------WQDEDRAVEEENGGCCG 53

Query: 73  ------VSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALI 110
                    V + L I + V+++K    +                    A  R  ++  +
Sbjct: 54  LSAVDDARRVAAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESL 113

Query: 111 SEHAKTINATLIMTAH 126
            + +  I A  I T H
Sbjct: 114 LKRSMDIGADYIATGH 129


>gi|325661222|ref|ZP_08149849.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472729|gb|EGC75940.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 357

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 39/136 (28%), Gaps = 36/136 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------ 72
              ++V +SGG DS      L     D     ++          ++  +           
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQI--------WQDEDRAVEEENGGCCG 53

Query: 73  ------VSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALI 110
                    V + L I + V+++K    +                    A  R  ++  +
Sbjct: 54  LSAVDDARRVAAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESL 113

Query: 111 SEHAKTINATLIMTAH 126
            + +  I A  I T H
Sbjct: 114 LKRSMDIGADYIATGH 129


>gi|291288176|ref|YP_003504992.1| Queuosine synthesis-like protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885336|gb|ADD69036.1| Queuosine synthesis-like protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 223

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VD-HCLRETAKDEVRYVSDVCSRL 80
           +VA+SGG+DS  +L+           GK    A++ V+ H      + E+   + + + L
Sbjct: 12  IVALSGGADSAAVLMLAAE-----HIGKNNVLAVTCVNQHFF----ESELENAAKIAAIL 62

Query: 81  RIAHSVVSWKNSKP-QTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
            + H   + +       G        + A++S   K      I      DD
Sbjct: 63  GVRHQSYTVEMPNEFYLGGNEKCYYCKKAVMSGMLKMKGFDTIFDGTNADD 113


>gi|167751814|ref|ZP_02423941.1| hypothetical protein ALIPUT_00055 [Alistipes putredinis DSM 17216]
 gi|167660055|gb|EDS04185.1| hypothetical protein ALIPUT_00055 [Alistipes putredinis DSM 17216]
          Length = 448

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 31/131 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H-------CLRETAKDEVR 71
           A +++ +SGG DS      L      +  G        ++ H              D + 
Sbjct: 2   ARVVIGLSGGVDSSVAAYLL------QQAGHEVIGLFMINWHDTTGTLEGDCPWHDDRL- 54

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISEHAK 115
           +   V  RL I    V   +   +          A            RE ++ +  + A 
Sbjct: 55  FAELVARRLDIPFHTVDLSDQYRRRVVDYMFSEYAKGRTPNPDVLCNREIKFDVFLKEAL 114

Query: 116 TINATLIMTAH 126
            + A  + T H
Sbjct: 115 KLGADFVATGH 125


>gi|320168110|gb|EFW45009.1| tRNA methyl transferase [Capsaspora owczarzaki ATCC 30864]
          Length = 647

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 30/133 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEV 70
             P  + V VSGG DS      L     D      +++ ++  +     HC  E    + 
Sbjct: 209 APPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDELDETG----HCTGEQDMRDA 264

Query: 71  RYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREA---------R----YALISEH 113
                 C+ L I    V++     N      L    R           R     AL++  
Sbjct: 265 AL---SCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPDILCNREIKFKALLNVV 321

Query: 114 AKTINATLIMTAH 126
             +  A  + T H
Sbjct: 322 QTSFGAQFLATGH 334


>gi|307944132|ref|ZP_07659473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseibium sp. TrichSKD4]
 gi|307772478|gb|EFO31698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseibium sp. TrichSKD4]
          Length = 390

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 66/211 (31%), Gaps = 33/211 (15%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC------LRETAKDEV 70
                ++VA+SGG DS  +   +     D     ++      DH           A  ++
Sbjct: 11  PEDTRVVVAMSGGVDSSVVAALMKEEGYDVIGVTLQLY----DHGAAVSRAKSCCAGVDI 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                   ++ I H V+ +++   +  +   A                   ++  + + A
Sbjct: 67  HDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDLLKTA 126

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           K + A ++ T H   +  D  +    R      ++   L       L     +I  P   
Sbjct: 127 KDLGADVLATGHYVRSRPDGNKRALFRPVDLDRDQSYFLFATTQEQL----DFIRFPLGG 182

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
             + ++R    +  +S    P + D  F   
Sbjct: 183 RPKSEVRQLAEKFGLSVANKPDSQDICFVPN 213


>gi|222529193|ref|YP_002573075.1| PP-loop domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456040|gb|ACM60302.1| PP-loop domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 276

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 48/200 (24%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              E ++ +++SL     + +A SGG DS  L+   + VL DR        A++      
Sbjct: 11  EKYEKLKNYIKSL---GSLAIAYSGGVDSTFLVKVAYDVLGDR------VIAVT------ 55

Query: 64  ETAK--------DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-- 113
            T+         D + ++  V ++  I       +        +      +  L  +   
Sbjct: 56  ATSSTYPKRELNDAITFIKQVGAK-HIVIESEELEIEGFNKNPVDRCYYCKKELFEKIWK 114

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--L 170
            AK      +     FDD      +   R       G+   C+       L +  P    
Sbjct: 115 VAKAHGIEYVADGSNFDD------LNDFRP------GMKAACE-------LNVVSPLKVA 155

Query: 171 RCRREDIRSFLLQRNISWCE 190
              +EDIR    +  +   +
Sbjct: 156 GLTKEDIRKLSKELELPTWD 175


>gi|187478638|ref|YP_786662.1| tRNA-specific 2-thiouridylase MnmA [Bordetella avium 197N]
 gi|123514648|sp|Q2KZ71|MNMA_BORA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115423224|emb|CAJ49755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella avium 197N]
          Length = 370

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 62/207 (29%), Gaps = 48/207 (23%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           V++L     ++V +SGG DS      L     +     +K               D+  Y
Sbjct: 2   VQTLQKKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNW----------EDDDDSEY 51

Query: 73  V---------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARY 107
                     + V   + +    V++ +           R                E ++
Sbjct: 52  CSTRQDLLDAASVADLIGVEFEYVNFASEYKDRVFADFLREYSAGRTPNPDVLCNAEIKF 111

Query: 108 ALISEHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
               +HA ++ A  I T H       D       R QR    K +  S      L+ LN 
Sbjct: 112 KAFLDHAMSLGAEHIATGHYARVRAVDTA-----RGQRFQLLKALDASKDQSYFLHRLNQ 166

Query: 164 -WISR---PFLRCRREDIRSFLLQRNI 186
             +SR   P     + ++R    +  +
Sbjct: 167 AQLSRTLFPLGELHKTEVRRIAHEIGL 193


>gi|332970210|gb|EGK09204.1| GMP synthase [Desmospora sp. 8437]
          Length = 508

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           ++VR  ++  +    +L A+SGG DS  +   +H  + D      + + + VDH  LR+ 
Sbjct: 202 DTVRE-LQEKIGEKRVLCALSGGVDSSVVAALIHRAIGD------QLTCVFVDHGLLRKG 254

Query: 66  AKD 68
             D
Sbjct: 255 EAD 257


>gi|298383937|ref|ZP_06993498.1| GMP synthase [Bacteroides sp. 1_1_14]
 gi|298263541|gb|EFI06404.1| GMP synthase [Bacteroides sp. 1_1_14]
          Length = 507

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKAQLGDDKVVLGLSGGVDSSVAAVLLNRAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|153807599|ref|ZP_01960267.1| hypothetical protein BACCAC_01881 [Bacteroides caccae ATCC 43185]
 gi|149129961|gb|EDM21173.1| hypothetical protein BACCAC_01881 [Bacteroides caccae ATCC 43185]
          Length = 507

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKAQLGDDKVVLGLSGGVDSSVAAVLLNRAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|29349673|ref|NP_813176.1| GMP synthase [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569956|ref|ZP_04847365.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. 1_1_6]
 gi|44887957|sp|Q89ZV6|GUAA1_BACTN RecName: Full=GMP synthase [glutamine-hydrolyzing] 1; AltName:
           Full=GMP synthetase 1; AltName: Full=Glutamine
           amidotransferase 1
 gi|29341583|gb|AAO79370.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840337|gb|EES68419.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. 1_1_6]
          Length = 507

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKAQLGDDKVVLGLSGGVDSSVAAVLLNRAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|291519650|emb|CBK74871.1| argininosuccinate synthase [Butyrivibrio fibrisolvens 16/4]
          Length = 406

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 58/206 (28%), Gaps = 52/206 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------HCLRETAKDE---- 69
            +++A SGG D+         +   +     +     +D         L E A+      
Sbjct: 5   KVILAYSGGLDTTA------IIPWLKENYGYEVICCCIDCGQGEELDGLSERAEASGATK 58

Query: 70  ---VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                 V D C    +                 A AR    A + E A+   AT I    
Sbjct: 59  LYIEDIVDDFCDNYIVPCVQAGAVYENKYLLGTAMARPGIAAKLVEIARKEGATAICHGA 118

Query: 127 T--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR-----CRREDIRS 179
           T   +DQ+               +G+  +        +L I  P+         R+D   
Sbjct: 119 TGKGNDQI------------RFELGIKALAP------DLKIIAPWRNDKWKMQSRQDEID 160

Query: 180 FLLQRNI--SWCEDPSNTDDRFERVR 203
           +     I   +  D S     + R R
Sbjct: 161 YCKAHGIDLPFSTDQS-----YSRDR 181


>gi|268589343|ref|ZP_06123564.1| GMP synthase [Providencia rettgeri DSM 1131]
 gi|291315369|gb|EFE55822.1| GMP synthase [Providencia rettgeri DSM 1131]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 21/193 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR- 63
           IE     ++  +   H+L+A+SGG DS    + L+  +  R       + + VD+  LR 
Sbjct: 214 IEDTVARLKEQIGDDHVLLALSGGVDSSVTALLLNRAIGKR------LTCVFVDNGLLRL 267

Query: 64  ETAKDEVR-YVSDVCSRLRIAHSVV--SWKNSKPQTGLMAAAREARYALISEHAKTI--- 117
             A   +  +       L I H+     + N+        A R+    +  E        
Sbjct: 268 NEADQVMEMFAGKF--DLNIIHAKAEDRFLNALAGISDPEAKRKKIGHVFIEVFDEESSK 325

Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             N   +     + D +E+    + + +  K          +  D+ L +  P     ++
Sbjct: 326 LPNIKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPDDMKLGLVEPLKELFKD 382

Query: 176 DIRSFLLQRNISW 188
           ++R   L+  + +
Sbjct: 383 EVRKIGLELGLPY 395


>gi|222152184|ref|YP_002561344.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Macrococcus caseolyticus JCSC5402]
 gi|254800105|sp|B9E8Y0|GUAA_MACCJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222121313|dbj|BAH18648.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Macrococcus caseolyticus JCSC5402]
          Length = 513

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 26/182 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYV-S 74
           V    ++ A+SGG DS  + + +H  + D      + + I VDH  LR+   D    V  
Sbjct: 216 VGDRKVICAMSGGVDSSVVAVLIHKAIGD------QLTCIFVDHGLLRKGEGD---MVMK 266

Query: 75  DVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  +    V  K          S P+        E  Y    E AK  +A  +   
Sbjct: 267 QFGEGFNMNIIRVDAKERFMSKLAGVSDPEQKRKIIGNEFVYLFDEEAAKLKDADFLAQG 326

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E            + +        +  D+   +  P     ++++R+  ++  
Sbjct: 327 TLYTDIIE------SGTKTAQTIKSHHNVGGLPEDMQFELIEPVNTLFKDEVRALGIELG 380

Query: 186 IS 187
           I 
Sbjct: 381 IP 382


>gi|164688541|ref|ZP_02212569.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM
           16795]
 gi|164602954|gb|EDQ96419.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM
           16795]
          Length = 362

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 55/230 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------- 65
              +++ +SGG DS      L     D     +K          ++              
Sbjct: 2   KKKVMIGMSGGVDSSVAAYLLKEQGYDVIGVTMKL--------WQDDEEYELIENDGGCC 53

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-ARYAL 109
           + + V     V  +L I   V+++K    +                    A  +  ++  
Sbjct: 54  SLEAVEDARSVAQKLDIPFYVLNFKEVFKEKVIDYFIDEYINGRTPNPCIACNKYIKFED 113

Query: 110 ISEHAKTINATLIMTAHTF---DDQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           +   A+ I    + T H      D+ ET   +  +S  D  ++   L  M      D   
Sbjct: 114 LYRRARQIGCDYVATGHYARIEKDE-ETGRYLLTKSVTDKKDQTYALYNMTQ----DQLE 168

Query: 164 WISRPFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFERVRVRRF 207
               P     +E +R    +  +     P +       D+ +    V+R 
Sbjct: 169 HTLLPIGDFEKEKVREMAKELGLVVHNKPDSQEICFVKDNDYA-NYVKRH 217


>gi|163742268|ref|ZP_02149656.1| hypothetical protein RG210_03618 [Phaeobacter gallaeciensis 2.10]
 gi|161384598|gb|EDQ08979.1| hypothetical protein RG210_03618 [Phaeobacter gallaeciensis 2.10]
          Length = 232

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L   L +       G++    +S D+  R   + E+ Y +    RL + H 
Sbjct: 7  CSGGLDSVSLAHVLAA------KGQLS-RLVSFDYGQRH--RKELDYAAACGQRLGVPHE 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDMR 62


>gi|121533884|ref|ZP_01665710.1| exsB protein [Thermosinus carboxydivorans Nor1]
 gi|121307395|gb|EAX48311.1| exsB protein [Thermosinus carboxydivorans Nor1]
          Length = 223

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 46/203 (22%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L  A+            +  A++ D+  R   + E+     + +  
Sbjct: 10  LVV-FSGGQDSTTCLFWAMKHFQ--------EVEAVTFDYGQRH--RAEIECAQKIAAEQ 58

Query: 81  RIAHSVVSWK-------NSKPQTGLMAAA-------------REARY-ALISEHAKTINA 119
            IAH+++          ++  +  +   A             R   + +  +  A+  N 
Sbjct: 59  GIAHTILDLSLLNQLAPSALTRADIEVKAGENGGLPTTFVPGRNLLFLSFAAVLARQKNI 118

Query: 120 TLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             I+T        ET +      RD   K + ++        D    I  P +   + + 
Sbjct: 119 RHIVTG-----VCETDFSGYPDCRDAFIKSLNVTIQLAM---DYQFVIHTPLMWLNKAET 170

Query: 178 RSFLLQRN-ISWCEDPSNTDDRF 199
                Q   + +    SNT   +
Sbjct: 171 WELADQLGVLDYIR--SNTLTCY 191


>gi|121596352|ref|YP_988248.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax sp. JS42]
 gi|205811052|sp|A1WD47|MNMA_ACISJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120608432|gb|ABM44172.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax sp. JS42]
          Length = 379

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 46/197 (23%), Gaps = 38/197 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     +     +K               D+  +     
Sbjct: 2   KKHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNW----------EDDDDSEFCSSRQ 51

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + I    V++             RE +                     +
Sbjct: 52  DFLDAASVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           HA  + A  I T H         T      +           +       L+  +  P  
Sbjct: 112 HAMRLGAEKIATGHYARVRQNPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLF-PVG 170

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R       + 
Sbjct: 171 ELHKTEVRRIAADIGLP 187


>gi|71907956|ref|YP_285543.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Dechloromonas aromatica RCB]
 gi|91206803|sp|Q47DK8|GUAA_DECAR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71847577|gb|AAZ47073.1| GMP synthase (glutamine-hydrolyzing) [Dechloromonas aromatica RCB]
          Length = 544

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 33/198 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           I      +R  V    +++ +SGG DS      +H  + D      + + + VDH L R 
Sbjct: 214 IAEAVDAIRRQVGDEEVILGLSGGVDSSVAAALIHKAIGD------QLTCVFVDHGLLRL 267

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEH 113
              D    V +     L +   V+         G +A      + R         +    
Sbjct: 268 NEGD---MVMEMFARNLGVK--VIRVDAVDDFMGKLAGVSDPEQKRKIIGKEFVEVFQVE 322

Query: 114 AKTINAT-LIMTAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPF 169
           +K + A   +     + D +E+          +KG            +  D++L +  P 
Sbjct: 323 SKKLAAAKWLAQGTIYPDVIESA------GKGKKGAHTIKSHHNVGGLPEDMHLKLLEPL 376

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 377 RELFKDEVRELGIALGLP 394


>gi|301607403|ref|XP_002933290.1| PREDICTED: LOW QUALITY PROTEIN: GMP synthase
           [glutamine-hydrolyzing]-like [Xenopus (Silurana)
           tropicalis]
          Length = 702

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           +E +R  ++  V  + +LV +SGG DS      L+  L+       +  A+ +D+   R 
Sbjct: 224 VECIRE-IKEKVGSSKVLVLLSGGVDSTVCTALLNKALNQD-----QVIAVHIDNGFMR- 276

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
             K E + V +   +L I   VV+  +S
Sbjct: 277 --KRESQSVEEALKKLGIQVKVVNAAHS 302


>gi|294674357|ref|YP_003574973.1| GMP synthase (glutamine-hydrolyzing) [Prevotella ruminicola 23]
 gi|294473645|gb|ADE83034.1| GMP synthase (glutamine-hydrolyzing) [Prevotella ruminicola 23]
          Length = 534

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 72/203 (35%), Gaps = 43/203 (21%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++S    +++ +    +++ +SGG DS    + L+  + +R       + I VDH  L
Sbjct: 196 SFVDSTVAELKAQLGDDRVILGLSGGVDSSVAAVLLNKAIGNR------LTCIFVDHGML 249

Query: 63  RETA------------------KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104
           R+                        ++ +D+     +         + P+       R+
Sbjct: 250 RKNEFNQVMDDYKVLGLNVIGVDASAKFFADLA---GV---------TDPEQKRKIIGRD 297

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
                 +E  K  +A  +     + D++E++      +   K +        +  +++L 
Sbjct: 298 FVEVFNAEAKKITDAKWLAQGTIYPDRIESL------NITGKVIKSHHNVGGLPKEMHLQ 351

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++R    Q  + 
Sbjct: 352 LCEPLQWLFKDEVRRVGRQLGMP 374


>gi|104783362|ref|YP_609860.1| GMP synthase [Pseudomonas entomophila L48]
 gi|122402037|sp|Q1I5K9|GUAA_PSEE4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|95112349|emb|CAK17076.1| GMP synthetase (glutamine aminotransferase) [Pseudomonas
           entomophila L48]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDE 69
           VR+ V  A++L+ +SGG DS  +   LH  + D      + + + VD+ L    E     
Sbjct: 221 VRAQVGSANVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLHEG-DQV 273

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAA----------REARYALISEHAKTIN 118
           +    +    + +   V+     K     L   A          R       +E +K  N
Sbjct: 274 MAMFKE---NMGVK--VIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDVFDAEASKLEN 328

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E+      +      +        +  ++NL +  P     ++++R
Sbjct: 329 IQFLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVR 385

Query: 179 SFLLQRNISW 188
              L+  + +
Sbjct: 386 KIGLELGLPY 395


>gi|26987768|ref|NP_743193.1| GMP synthase [Pseudomonas putida KT2440]
 gi|38257494|sp|Q88P21|GUAA_PSEPK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|24982461|gb|AAN66657.1|AE016293_7 GMP synthase [Pseudomonas putida KT2440]
 gi|313497398|gb|ADR58764.1| GuaA [Pseudomonas putida BIRD-1]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDE 69
           VR+ V  A++L+ +SGG DS  +   LH  + D      + + + VD+ L    E     
Sbjct: 221 VRAQVGSANVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLHEG-DQV 273

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAA----------REARYALISEHAKTIN 118
           +    +    + +   V+     K     L   A          R       +E +K  N
Sbjct: 274 MAMFKE---NMGVK--VIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDVFDAEASKLEN 328

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E+      +      +        +  ++NL +  P     ++++R
Sbjct: 329 IQFLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVR 385

Query: 179 SFLLQRNISW 188
              L+  + +
Sbjct: 386 KIGLELGLPY 395


>gi|327313700|ref|YP_004329137.1| GMP synthase [Prevotella denticola F0289]
 gi|326945198|gb|AEA21083.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella denticola F0289]
          Length = 537

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +R  V    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 221 SFIESTVQELRGQVGNDRVILGLSGGVDSSVCAVLLNKAIGK------NLTCIFVDHGML 274

Query: 63  RET 65
           R+ 
Sbjct: 275 RKN 277


>gi|322498973|emb|CBZ34045.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 656

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 67/251 (26%), Gaps = 65/251 (25%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           ++R           +L +A SGG DS    + L   L     G  +   I +DH    L 
Sbjct: 211 ALRLIRERTSDGQKVLCLA-SGGVDSTVCAVLLLKAL-----GPERVVCIHIDHGFMRLN 264

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN----- 118
           E+    V+ V  + +   +   +V  +    Q      A+ +R A  +   + +      
Sbjct: 265 ES----VQVVEAL-NAAGVCVHLVQAQEDFAQASTEMTAKGSRAAYTTNKLREVTDPEEK 319

Query: 119 -----------ATLIMTAHTFDDQLETVYMR--------SQRDYAEKGMGLSGM------ 153
                         ++     D  +E + +          +       +    +      
Sbjct: 320 RNIIGNTFMTVCDRVIKELQLD--VENLLLAQGTLRPDLIESGSKYASVNADSIKTHHND 377

Query: 154 -CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                L      I  P     ++++R    +  I                  R  V    
Sbjct: 378 TAVVRLLRDAGRIIEPLCDYHKDEVRELGARLGIP-----------------RHLVERQP 420

Query: 213 LHALYLKMKKF 223
                L ++  
Sbjct: 421 FPGPGLAIRTL 431


>gi|310780562|ref|YP_003968894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
 gi|309749885|gb|ADO84546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ilyobacter polytropus DSM 2926]
          Length = 376

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 35/133 (26%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAK-------DE 69
           + V +SGG DS  +   L                I++ H      L E +        D+
Sbjct: 23  VAVGMSGGVDSSTVAYMLKK-------QGYNVIGITMKHWSGMDELSEDSNSKTCCSLDD 75

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAARE-------ARYALISEHAK- 115
           +     VC  L I H V++ K    +  +          R         RY  + +  + 
Sbjct: 76  IYDAKRVCDDLDIPHYVINLKEPFKEKVVDYFIEEYEKGRTPNPCMVCNRYIKLGKLLEY 135

Query: 116 --TINATLIMTAH 126
              + A  + T H
Sbjct: 136 GIKMGADFVATGH 148


>gi|282889933|ref|ZP_06298468.1| hypothetical protein pah_c008o016 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281500126|gb|EFB42410.1| hypothetical protein pah_c008o016 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 221

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS  +L  LH         +I+  AIS D+  R   + E+ +   +     I H 
Sbjct: 7  LSGGLDSAVMLARLHE-------QQIETLAISFDYGQRH--RVELEFAKKIADFYGIEHE 57

Query: 86 VVSWK 90
          V+   
Sbjct: 58 VIPID 62


>gi|294851210|ref|ZP_06791883.1| exsB protein [Brucella sp. NVSL 07-0026]
 gi|294819799|gb|EFG36798.1| exsB protein [Brucella sp. NVSL 07-0026]
          Length = 232

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H + ++     +    +S D+  R   K E+ +      RL + H 
Sbjct: 7  CSGGLDSVSLA---HKMAAEHELTGL----LSFDYGQRH--KKELDFAQACAKRLGVPHQ 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDIR 62


>gi|162455579|ref|YP_001617946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sorangium cellulosum 'So ce 56']
 gi|205828973|sp|A9EXM5|MNMA_SORC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161166161|emb|CAN97466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sorangium cellulosum 'So ce 56']
          Length = 385

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 57/196 (29%), Gaps = 35/196 (17%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----------RETAK 67
             A + +A+SGG DS      L            +   +++ H            R  A 
Sbjct: 20  SGARVFIAMSGGVDSSVAAARLCD-------AGYEVVGVTL-HLWDYPDDGSVKSRCCAP 71

Query: 68  DEVRYVSDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REARYALIS 111
           ++      V   L I H                 V    +        A  R  +   + 
Sbjct: 72  EDQHDARRVADHLGIPHYTFDRRALFREHVVDPFVEAYLAGETPSPCVACNRSVKLRELF 131

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A+ +  + + T H     LE    R  R   ++    S     +  D    +  P   
Sbjct: 132 PLAERLGVSWVATGHYARVVLEEGGARLYRGR-DRHKDQSYFLHMLRSDELSRLLFPLGD 190

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R+  + R + 
Sbjct: 191 STKDEVRAEAIARGLP 206


>gi|116627714|ref|YP_820333.1| GMP synthase [Streptococcus thermophilus LMD-9]
 gi|116100991|gb|ABJ66137.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus thermophilus
           LMD-9]
 gi|312278262|gb|ADQ62919.1| Bifunctional GMP synthase/glutamineamidotransferase protein
           [Streptococcus thermophilus ND03]
          Length = 520

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 30/188 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR   +   +
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKGESDQVM 272

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
                +  +  +  +++    SK    L+A              E  +    E +K    
Sbjct: 273 EM---LGGKFGL--NIIRVDASKRFLDLLAGVDDPEKKRKIIGNEFVHVFDDEASKLKGV 327

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +  D+   +  P     ++++R+
Sbjct: 328 DFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRA 381

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 382 LGTELGMP 389


>gi|301780780|ref|XP_002925806.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Ailuropoda
           melanoleuca]
          Length = 699

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE +R  ++  V  + +LV +SGG DS      L+  LS       +  A+ +D+   R 
Sbjct: 230 IECIRE-IKERVGTSKVLVLLSGGVDSTVCTALLNRALSQD-----QVIAVHIDNGFMR- 282

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
             K E + V +   +L I   V++  +S
Sbjct: 283 --KRESQSVEEALKKLGIQVKVINAAHS 308


>gi|300781387|ref|ZP_07091241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
 gi|300533094|gb|EFK54155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
          Length = 361

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 48/193 (24%), Gaps = 53/193 (27%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------HCLRETAK-----DEVRYVS 74
           SGG DS      L     D          + V        H  RE+A+     ++     
Sbjct: 2   SGGVDSSVAAARLVDAGHD---------VVGVHLALSKDAHQTRESARGCCSLEDSADAR 52

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA----AAR------------EARYALISEHAKTIN 118
            VC +L I   V  + +   +  +       AR            + ++A + E A  + 
Sbjct: 53  RVCDKLGIPFYVWDFSDRFKEDVIDDFVDSYARGETPNPCLRCNEKIKFAALLERAVQLG 112

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD------TILYDLNLWISRPFLRC 172
              I T H                       +    D       +  D       P    
Sbjct: 113 FDAIATGH----------YALIDGAGNLRRSIDPQKDQSYVLGVMTRDELDRCIFPVGDT 162

Query: 173 RREDIRSFLLQRN 185
            +  IR       
Sbjct: 163 EKPQIREEAAAYG 175


>gi|257452732|ref|ZP_05618031.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|257466593|ref|ZP_05630904.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917748|ref|ZP_07913988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059273|ref|ZP_07923758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313684949|gb|EFS21784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 3_1_5R]
 gi|313691623|gb|EFS28458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 345

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 38/196 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS--VD--HCLRETAKDEVRYVS 74
              +++ +SGG DS      L               A+   V      +E  KD      
Sbjct: 2   KEKVILGMSGGVDSAVAAYLLQK-------NGYDVIAVHFSVHKTERTQEEVKDS----Q 50

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTIN 118
            + ++  I       +    +  +          R            ++ L+ + A+   
Sbjct: 51  TIANQFSIPLYSYCLEKEFQEKIISYYLTEIEKGRTPSPCPLCDDSVKFHLLFQEAEKHG 110

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  + T H      ++  +T  + +     +       M   +  +    I  P     +
Sbjct: 111 AKYVATGHYASISSNNVFKTSLLEANHHIHKDQ---CYMLYRLSSEKLKRILFPLSSLEK 167

Query: 175 EDIRSFLLQRNISWCE 190
            ++R    +  +   E
Sbjct: 168 SEVREIARKIGLFVSE 183


>gi|150402069|ref|YP_001329363.1| GMP synthase subunit B [Methanococcus maripaludis C7]
 gi|166215313|sp|A6VFI6|GUAAB_METM7 RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|150033099|gb|ABR65212.1| GMP synthase, large subunit [Methanococcus maripaludis C7]
          Length = 310

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 72/199 (36%), Gaps = 32/199 (16%)

Query: 1   MFLS--PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF +   IE     +R  +     ++A+SGG DS        +VL+DR+ G  K  A+ V
Sbjct: 1   MFKTEPFIEESIEEIRKQIDNRRTIIALSGGVDSSV-----AAVLADRAIGD-KLLAVYV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYA 108
           D  L R+   +E+  +     ++ +   +V  K+           P+       R     
Sbjct: 55  DTGLMRKNESEEIWKIFK--EQMGLNLKIVEAKDIFLKELEGVIDPEEKRKIIGRLF-IE 111

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +  + A+     +++      D +E+           +G   +     +   + L +  P
Sbjct: 112 VFEKVAEEQGEEVLVQGTIAPDWIES-----------EGQIKTHHNIALPGGMVLDVVEP 160

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R       + 
Sbjct: 161 LRELYKDEVRLLAEALGLP 179


>gi|147919832|ref|YP_686419.1| hypothetical protein RCIX1925 [uncultured methanogenic archaeon
           RC-I]
 gi|110621815|emb|CAJ37093.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 377

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 64/203 (31%), Gaps = 38/203 (18%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F   I  ++   R   Y    +V VSGG DS  +L     +        ++  A+  D+ 
Sbjct: 51  FEKLIAKIKHEGRKKEYDC--VVGVSGGRDSTYVLYNAIKL-------GLRPLAVHFDNG 101

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--------PQTGLMAAAREARYALISEH 113
               +   V  +    +RL +    V     +         +  +  A     YA++S  
Sbjct: 102 W--NSDIAVSNIKRATTRLNVDLHTVVADWEEFKDLQKSFLKASVSDAEIPTDYAILSVL 159

Query: 114 AKT---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI----S 166
            +         I+  H            S R      +G + M    ++ ++        
Sbjct: 160 YREAANAGTRYILNGH------------SFRTEGIVPLGWTYMDGRYVHSVHKQFGRMRI 207

Query: 167 RPFLRCRREDIRSFLLQRNISWC 189
           R F      D+  + L + I++ 
Sbjct: 208 RSFPVMSMSDLIYYTLVKRITFV 230


>gi|77919454|ref|YP_357269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter carbinolicus DSM 2380]
 gi|123573968|sp|Q3A3F8|MNMA_PELCD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|77545537|gb|ABA89099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter carbinolicus DSM 2380]
          Length = 352

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 43/197 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA------------ISVDHCLRET 65
              HILVA+SGG DS      L  +        +                  +       
Sbjct: 4   KNKHILVAMSGGVDSTVAAALL--LAQGHQVSGVTMRVWDTEPLGDGREPAHI------- 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYAL 109
                R    V   L I   VV  +                S           R  +++ 
Sbjct: 55  -----RDARKVAFDLGIPLHVVDLREEFLQQVVTPFCEEYLSGRTPNPCVLCNRVFKFSR 109

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A  + A  + T H     +E   ++     + +    S    T+       +  P 
Sbjct: 110 LLREADRLGADALATGHYAR-IVEHDGLKVLAKGSNRQKDQSYFLFTLTQQQLQRVVFPL 168

Query: 170 LRCRREDIRSFLLQRNI 186
               +E++R+   +  +
Sbjct: 169 GEMSKEEVRTHAERLGL 185


>gi|46205154|ref|ZP_00048944.2| COG0518: GMP synthase - Glutamine amidotransferase domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 304

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS    + +H  + D      + + + VDH L R    DEV 
Sbjct: 217 IREQVGSEKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDHGLMRLGEGDEV- 269

Query: 72  YVSDVCSRLRIAHSVVSWKN 91
            V        I    V  ++
Sbjct: 270 -VRLFRDHYNIPLVHVEAQD 288


>gi|310827767|ref|YP_003960124.1| argininosuccinate synthase [Eubacterium limosum KIST612]
 gi|308739501|gb|ADO37161.1| argininosuccinate synthase [Eubacterium limosum KIST612]
          Length = 413

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 81/269 (30%), Gaps = 54/269 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC------------LRETAK 67
             +++A SGG D+         +   +     +   + VD              L   A 
Sbjct: 4   KKVILAYSGGLDTTT------IIPWLKETYDYEVICVCVDVGQGKETEGLEERALSSGAS 57

Query: 68  ----DEV--RYVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
               ++V   +V + C     +    V  K     T L   AR     ++ + A    A 
Sbjct: 58  KLYIEDVTDEFVEEYC--WPALKADAVYEKKYLLGTSL---ARPLIAKVLVDIAHKEGAE 112

Query: 121 LIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            I    T   +DQ+     R +         L  +    ++DL            RED  
Sbjct: 113 AICHGATGKGNDQV-----RFELGIGALDPQLKIIAPWRIWDLQ----------SREDCM 157

Query: 179 SFLLQRNISWCEDPSNTDDRFERVR----VRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
            F ++ +I       + D  + R R    +     +++  +L  K      L   +  A 
Sbjct: 158 DFCIEHDIKV---SMSHDQSYSRDRNLLHISHEGLELEDPSLEPKYDHLLKLTKTLEEAP 214

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTL 263
                  +       I I+ + ++    L
Sbjct: 215 DTPEEIEIEFLNGEPIKINGEAMSPRKIL 243


>gi|306821357|ref|ZP_07454965.1| PP-loop superfamily ATP-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550575|gb|EFM38558.1| PP-loop superfamily ATP-binding protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 278

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 41/192 (21%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +  +++ L     +L+A SGG DS  +L     V       K    A++ +  L    
Sbjct: 13  ERLFEYIKKLA-DEKVLIAFSGGVDSSLVLKIAREVTE-----KSNVIAVTFNTILHP-- 64

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           K+++  V ++     +   +V       +  L            ++  +           
Sbjct: 65  KNDIEIVKNLAQDFDVTLQIVEINEITNEKIL-----------YNDVKRCYYCKK----- 108

Query: 127 TFDDQLETVYM---RSQRDYAEKGMGLSGMCDTILYDLN------LWISRPF--LRCRRE 175
              D  E + M        +   G   S   D  +Y         L +  P   ++  + 
Sbjct: 109 ---DIFEKIVMLKDSLNFGHIMDG---SNFDDVFVYRPGKVALKELNVISPLQDMKFTKN 162

Query: 176 DIRSFLLQRNIS 187
           ++R    + NIS
Sbjct: 163 EVRELAKKLNIS 174


>gi|328715380|ref|XP_001943073.2| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 1
           [Acyrthosiphon pisum]
          Length = 682

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++R  V  + +LV +SGG DS      LH     R+  + +  A+ +D
Sbjct: 218 YIRDQVGQSKVLVLLSGGVDSTVCAALLH-----RALDREQVIAVHID 260


>gi|328715378|ref|XP_003245614.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 2
           [Acyrthosiphon pisum]
          Length = 713

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++R  V  + +LV +SGG DS      LH     R+  + +  A+ +D
Sbjct: 249 YIRDQVGQSKVLVLLSGGVDSTVCAALLH-----RALDREQVIAVHID 291


>gi|300868100|ref|ZP_07112736.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506]
 gi|300333898|emb|CBN57914.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506]
          Length = 352

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 58/200 (29%), Gaps = 53/200 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
            I+V +SGG DS      LH          +   +  G+   S   VD            
Sbjct: 3   KIVVGLSGGVDSSTAAAILHHQGYEVVGLTLWLMKGKGQC-CSEGMVD------------ 49

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAA------------REARYA-LISEHA 114
             + +C +L I H +V     ++ S     +                R  ++  ++    
Sbjct: 50  -AAQICEQLGIPHEIVDSRDLFQASIVDYLVEGYGAGITPLPCSQCNRTVKFGPMLRYAR 108

Query: 115 KTINATLIMTAHTFD-------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           + +    I T H          D+ +    R+     ++   L  +   +L         
Sbjct: 109 EKLGIEKIATGHYAQISYDGSVDRYQ--LRRAVDSTKDQSYFLYDLTQEMLAGS----VF 162

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + + R    +  + 
Sbjct: 163 PLGDIAKTETRRIAAEFGLK 182


>gi|146086376|ref|XP_001465531.1| GMP synthase [Leishmania infantum JPCM5]
 gi|321399442|emb|CBZ08655.1| putative GMP synthase [Leishmania infantum JPCM5]
          Length = 656

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 67/251 (26%), Gaps = 65/251 (25%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           ++R           +L +A SGG DS    + L   L     G  +   I +DH    L 
Sbjct: 211 ALRLIRERTSDGQKVLCLA-SGGVDSTVCAVLLLKAL-----GPERVVCIHIDHGFMRLN 264

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN----- 118
           E+    V+ V  + +   +   +V  +    Q      A+ +R A  +   + +      
Sbjct: 265 ES----VQVVEAL-NAAGVCVHLVQAQEDFAQASTEMTAKGSRAAYTTNKLREVTDPEEK 319

Query: 119 -----------ATLIMTAHTFDDQLETVYMR--------SQRDYAEKGMGLSGM------ 153
                         ++     D  +E + +          +       +    +      
Sbjct: 320 RNIIGNTFMTVCDRVIKELQLD--VENLLLAQGTLRPDLIESGSKYASVNADSIKTHHND 377

Query: 154 -CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                L      I  P     ++++R    +  I                  R  V    
Sbjct: 378 TAVVRLLRDAGRIIEPLCDYHKDEVRELGARLGIP-----------------RHLVERQP 420

Query: 213 LHALYLKMKKF 223
                L ++  
Sbjct: 421 FPGPGLAIRTL 431


>gi|70732263|ref|YP_262019.1| GMP synthase [Pseudomonas fluorescens Pf-5]
 gi|91206820|sp|Q4K6W4|GUAA_PSEF5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|68346562|gb|AAY94168.1| GMP synthase [Pseudomonas fluorescens Pf-5]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 31/191 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           +R+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 221 IRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEG---- 270

Query: 70  VRYV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTI 117
              V +     + +   V+     +     +A             R       +E  K  
Sbjct: 271 -EQVMAMFAENMGVK--VIRANAEEQFLNNLAGEADPEKKRKIIGRTFIDVFDAESCKLE 327

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   +     + D +E+      +      +        +  ++NL +  P     ++++
Sbjct: 328 NIKYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEV 384

Query: 178 RSFLLQRNISW 188
           R   L+  + +
Sbjct: 385 RRLGLELGLPY 395


>gi|17986379|ref|NP_539013.1| succinoglycan biosynthesis regulator [Brucella melitensis bv. 1
          str. 16M]
 gi|62290820|ref|YP_222613.1| exsB protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700732|ref|YP_415306.1| ExsB protein [Brucella melitensis biovar Abortus 2308]
 gi|148559755|ref|YP_001259789.1| exsB protein [Brucella ovis ATCC 25840]
 gi|163843994|ref|YP_001628398.1| exsB protein [Brucella suis ATCC 23445]
 gi|189025039|ref|YP_001935807.1| ExsB protein [Brucella abortus S19]
 gi|225628171|ref|ZP_03786206.1| exsB protein [Brucella ceti str. Cudo]
 gi|225853408|ref|YP_002733641.1| ExsB protein [Brucella melitensis ATCC 23457]
 gi|237816334|ref|ZP_04595327.1| exsB protein [Brucella abortus str. 2308 A]
 gi|254690110|ref|ZP_05153364.1| exsB protein [Brucella abortus bv. 6 str. 870]
 gi|254694600|ref|ZP_05156428.1| exsB protein [Brucella abortus bv. 3 str. Tulya]
 gi|254696225|ref|ZP_05158053.1| exsB protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700610|ref|ZP_05162438.1| exsB protein [Brucella suis bv. 5 str. 513]
 gi|254707505|ref|ZP_05169333.1| exsB protein [Brucella pinnipedialis M163/99/10]
 gi|254708955|ref|ZP_05170766.1| exsB protein [Brucella pinnipedialis B2/94]
 gi|254731143|ref|ZP_05189721.1| exsB protein [Brucella abortus bv. 4 str. 292]
 gi|256030482|ref|ZP_05444096.1| exsB protein [Brucella pinnipedialis M292/94/1]
 gi|256112300|ref|ZP_05453221.1| exsB protein [Brucella melitensis bv. 3 str. Ether]
 gi|256158468|ref|ZP_05456366.1| exsB protein [Brucella ceti M490/95/1]
 gi|256253887|ref|ZP_05459423.1| exsB protein [Brucella ceti B1/94]
 gi|256258364|ref|ZP_05463900.1| exsB protein [Brucella abortus bv. 9 str. C68]
 gi|256263112|ref|ZP_05465644.1| queuosine biosynthesis protein queC [Brucella melitensis bv. 2
          str. 63/9]
 gi|256370374|ref|YP_003107885.1| queuosine biosynthesis protein QueC [Brucella microti CCM 4915]
 gi|260169389|ref|ZP_05756200.1| queuosine biosynthesis protein QueC [Brucella sp. F5/99]
 gi|260546087|ref|ZP_05821827.1| queuosine biosynthesis protein queC [Brucella abortus NCTC 8038]
 gi|260562884|ref|ZP_05833370.1| queuosine biosynthesis protein queC [Brucella melitensis bv. 1
          str. 16M]
 gi|260755649|ref|ZP_05867997.1| queuosine biosynthesis protein queC [Brucella abortus bv. 6 str.
          870]
 gi|260758874|ref|ZP_05871222.1| queuosine biosynthesis protein queC [Brucella abortus bv. 4 str.
          292]
 gi|260760598|ref|ZP_05872941.1| queuosine biosynthesis protein queC [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260884674|ref|ZP_05896288.1| queuosine biosynthesis protein queC [Brucella abortus bv. 9 str.
          C68]
 gi|261214924|ref|ZP_05929205.1| queuosine biosynthesis protein queC [Brucella abortus bv. 3 str.
          Tulya]
 gi|261221024|ref|ZP_05935305.1| queuosine biosynthesis protein queC [Brucella ceti B1/94]
 gi|261314988|ref|ZP_05954185.1| queuosine biosynthesis protein queC [Brucella pinnipedialis
          M163/99/10]
 gi|261316454|ref|ZP_05955651.1| queuosine biosynthesis protein queC [Brucella pinnipedialis
          B2/94]
 gi|261751119|ref|ZP_05994828.1| queuosine biosynthesis protein queC [Brucella suis bv. 5 str.
          513]
 gi|261758911|ref|ZP_06002620.1| queuosine biosynthesis protein queC [Brucella sp. F5/99]
 gi|265987524|ref|ZP_06100081.1| queuosine biosynthesis protein queC [Brucella pinnipedialis
          M292/94/1]
 gi|265993733|ref|ZP_06106290.1| queuosine biosynthesis protein queC [Brucella melitensis bv. 3
          str. Ether]
 gi|265996984|ref|ZP_06109541.1| queuosine biosynthesis protein queC [Brucella ceti M490/95/1]
 gi|297247206|ref|ZP_06930924.1| exsB protein [Brucella abortus bv. 5 str. B3196]
 gi|75496157|sp|Q57AT2|QUEC_BRUAB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81852586|sp|Q8YJI8|QUEC_BRUME RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|110816216|sp|Q2YR96|QUEC_BRUA2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|167016411|sp|A5VSU2|QUEC_BRUO2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189038899|sp|B0CIX5|QUEC_BRUSI RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764309|sp|B2S8M9|QUEC_BRUA1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764310|sp|C0RFL5|QUEC_BRUMB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|17981969|gb|AAL51277.1| succinoglycan biosynthesis regulator [Brucella melitensis bv. 1
          str. 16M]
 gi|62196952|gb|AAX75252.1| exsB protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616833|emb|CAJ11929.1| ExsB protein [Brucella melitensis biovar Abortus 2308]
 gi|148371012|gb|ABQ60991.1| exsB protein [Brucella ovis ATCC 25840]
 gi|163674717|gb|ABY38828.1| exsB protein [Brucella suis ATCC 23445]
 gi|189020611|gb|ACD73333.1| ExsB protein [Brucella abortus S19]
 gi|225616996|gb|EEH14043.1| exsB protein [Brucella ceti str. Cudo]
 gi|225641773|gb|ACO01687.1| exsB protein [Brucella melitensis ATCC 23457]
 gi|237788401|gb|EEP62616.1| exsB protein [Brucella abortus str. 2308 A]
 gi|256000537|gb|ACU48936.1| queuosine biosynthesis protein QueC [Brucella microti CCM 4915]
 gi|260096194|gb|EEW80070.1| queuosine biosynthesis protein queC [Brucella abortus NCTC 8038]
 gi|260152900|gb|EEW87992.1| queuosine biosynthesis protein queC [Brucella melitensis bv. 1
          str. 16M]
 gi|260669192|gb|EEX56132.1| queuosine biosynthesis protein queC [Brucella abortus bv. 4 str.
          292]
 gi|260671030|gb|EEX57851.1| queuosine biosynthesis protein queC [Brucella abortus bv. 2 str.
          86/8/59]
 gi|260675757|gb|EEX62578.1| queuosine biosynthesis protein queC [Brucella abortus bv. 6 str.
          870]
 gi|260874202|gb|EEX81271.1| queuosine biosynthesis protein queC [Brucella abortus bv. 9 str.
          C68]
 gi|260916531|gb|EEX83392.1| queuosine biosynthesis protein queC [Brucella abortus bv. 3 str.
          Tulya]
 gi|260919608|gb|EEX86261.1| queuosine biosynthesis protein queC [Brucella ceti B1/94]
 gi|261295677|gb|EEX99173.1| queuosine biosynthesis protein queC [Brucella pinnipedialis
          B2/94]
 gi|261304014|gb|EEY07511.1| queuosine biosynthesis protein queC [Brucella pinnipedialis
          M163/99/10]
 gi|261738895|gb|EEY26891.1| queuosine biosynthesis protein queC [Brucella sp. F5/99]
 gi|261740872|gb|EEY28798.1| queuosine biosynthesis protein queC [Brucella suis bv. 5 str.
          513]
 gi|262551452|gb|EEZ07442.1| queuosine biosynthesis protein queC [Brucella ceti M490/95/1]
 gi|262764714|gb|EEZ10635.1| queuosine biosynthesis protein queC [Brucella melitensis bv. 3
          str. Ether]
 gi|263093013|gb|EEZ17163.1| queuosine biosynthesis protein queC [Brucella melitensis bv. 2
          str. 63/9]
 gi|264659721|gb|EEZ29982.1| queuosine biosynthesis protein queC [Brucella pinnipedialis
          M292/94/1]
 gi|297174375|gb|EFH33722.1| exsB protein [Brucella abortus bv. 5 str. B3196]
 gi|326409971|gb|ADZ67036.1| ExsB protein [Brucella melitensis M28]
 gi|326539688|gb|ADZ87903.1| exsB protein [Brucella melitensis M5-90]
          Length = 232

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H + ++     +    +S D+  R   K E+ +      RL + H 
Sbjct: 7  CSGGLDSVSLA---HKMAAEHELTGL----LSFDYGQRH--KKELDFAQACAKRLGVPHQ 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDIR 62


>gi|299148581|ref|ZP_07041643.1| GMP synthase [Bacteroides sp. 3_1_23]
 gi|298513342|gb|EFI37229.1| GMP synthase [Bacteroides sp. 3_1_23]
          Length = 507

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKAQLGDDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|237721354|ref|ZP_04551835.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. 2_2_4]
 gi|293369434|ref|ZP_06616019.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|229449150|gb|EEO54941.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. 2_2_4]
 gi|292635601|gb|EFF54108.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 507

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKAQLGDDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|255693367|ref|ZP_05417042.1| GMP synthase [Bacteroides finegoldii DSM 17565]
 gi|260620844|gb|EEX43715.1| GMP synthase [Bacteroides finegoldii DSM 17565]
          Length = 507

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKAQLGDDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|160887083|ref|ZP_02068086.1| hypothetical protein BACOVA_05099 [Bacteroides ovatus ATCC 8483]
 gi|260171605|ref|ZP_05758017.1| GMP synthase [Bacteroides sp. D2]
 gi|315919919|ref|ZP_07916159.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156107494|gb|EDO09239.1| hypothetical protein BACOVA_05099 [Bacteroides ovatus ATCC 8483]
 gi|313693794|gb|EFS30629.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 507

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKAQLGDDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|159044055|ref|YP_001532849.1| tRNA-specific 2-thiouridylase MnmA [Dinoroseobacter shibae DFL 12]
 gi|205816871|sp|A8LK49|MNMA_DINSH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|157911815|gb|ABV93248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dinoroseobacter shibae DFL 12]
          Length = 384

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 52/221 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 21  PSETRVVVAMSGGVDSSVVAAELACEGYDVVGVTLQLY----DHG--AALAKKGACCAGR 74

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V   +   H V+ ++N+  +  +   A                   ++  + E
Sbjct: 75  DIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLGGATPVPCIRCNERVKFKDLLE 134

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            A+ + A  + T H             QR        L    D          +   +  
Sbjct: 135 TARDLEADCMATGH-----------YIQRKMGPAKAELHSAADANRDQSYFLFSTTQEQL 183

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P      + + R+   +  +S  + P + D  F   
Sbjct: 184 DYLRFPLGHLASKAETRALAAKHGLSVADKPDSQDICFVPN 224


>gi|83649265|ref|YP_437700.1| PP-loop superfamily ATPase [Hahella chejuensis KCTC 2396]
 gi|110816229|sp|Q2S7U9|QUEC_HAHCH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|83637308|gb|ABC33275.1| predicted PP-loop superfamily ATPase [Hahella chejuensis KCTC
          2396]
          Length = 231

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          SL+    + +  SGG DS  LL  L     +         A+S ++  R +   E+    
Sbjct: 7  SLIPNRAVAI-FSGGMDSFTLLNELVQEGKE-------VFALSFNYGQRHS--KELECAR 56

Query: 75 DVCSRLRIAHSVVSWKN 91
           VC  L IAH ++    
Sbjct: 57 QVCESLNIAHKIIDITA 73


>gi|319764949|ref|YP_004128886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicycliphilus denitrificans BC]
 gi|317119510|gb|ADV01999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alicycliphilus denitrificans BC]
          Length = 373

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 47/196 (23%), Gaps = 38/196 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
              ++V +SGG DS      L     +     +K               D+  Y      
Sbjct: 6   KQRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNW----------EDDDDSEYCSSRQD 55

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEH 113
               + V   + I    V++             RE +                     +H
Sbjct: 56  FLDAASVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDH 115

Query: 114 AKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           A  + A  I T H         T      +           +       L   +  P   
Sbjct: 116 AMRLGAEKIATGHYARVRHNPATGLFELLKGLDPAKDQSYFLHRLNQEQLARTLF-PVGE 174

Query: 172 CRREDIRSFLLQRNIS 187
            R+ ++R    +  + 
Sbjct: 175 LRKTEVRRIAEEIGLP 190


>gi|296110531|ref|YP_003620912.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leuconostoc kimchii IMSNU 11154]
 gi|295832062|gb|ADG39943.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leuconostoc kimchii IMSNU 11154]
          Length = 515

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R +V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+    E  
Sbjct: 214 IREVVGDKKVLLGLSGGVDSSVVGVLLHKAI------GSQLTSIFVDHGLLRKN---EAE 264

Query: 72  YV 73
            V
Sbjct: 265 QV 266


>gi|242372682|ref|ZP_04818256.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis M23864:W1]
 gi|242349599|gb|EES41200.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Staphylococcus epidermidis M23864:W1]
          Length = 513

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 26/182 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYV-S 74
           V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D    V  
Sbjct: 216 VGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD---MVME 266

Query: 75  DVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  +    V+ +          S P+        E  Y    E AK  +   +   
Sbjct: 267 QFGEGFDMNIIRVNAQERFMDKLKGVSDPEQKRKIIGNEFVYVFDDEAAKLTDVDFLAQG 326

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E            + +        +  D+   +  P     ++++R+  ++  
Sbjct: 327 TLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALGIELG 380

Query: 186 IS 187
           I 
Sbjct: 381 IP 382


>gi|227112674|ref|ZP_03826330.1| GMP synthase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V   H+++ +SGG DS    + LH  + DR       + + VD+  LR   A   +
Sbjct: 221 IREQVGNDHVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLLRLNEADQVL 274

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
                      +    V+ ++            EA+  +I          E +K  +   
Sbjct: 275 EM---FGDHFGLNIVHVAAEDRFLGELAGEDEPEAKRKIIGRVFVEVFDEEASKQTDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|17538240|ref|NP_502120.1| hypothetical protein B0035.16 [Caenorhabditis elegans]
 gi|20141962|sp|Q17440|MTU1_CAEEL RecName: Full=Probable mitochondrial tRNA-specific 2-thiouridylase
           1
 gi|13548315|emb|CAA97418.2| C. elegans protein B0035.16, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 375

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 63/200 (31%), Gaps = 46/200 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------HCLRETAKDEVRYV 73
            +++ +SGG DS      L      R F  I    I+ D       HC    +KDE    
Sbjct: 3   RVVIGMSGGVDSAVSAFLLKK----RGFDVIGLHMINWDVQEEGTSHC--PRSKDESD-A 55

Query: 74  SDVCSRLRIAHSVVSW----------------KNSKPQTGLMAAAREARYALISEHAKT- 116
            +VC RL I    V++                KN +     +   +  ++ +  + A+  
Sbjct: 56  RNVCDRLNIPFHTVNFVKEYWNDVFLKFLENYKNGRTTVPDIDCNQSIKFDVFHKIAREK 115

Query: 117 INATLIMTAH-----------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            NA  I T H              D  E      +    ++   L  +    L       
Sbjct: 116 FNADFIATGHYATTNFGDFQQNAKDSDEIRLFSGKDPLKDQTFFLCTVNQEQLKRAMF-- 173

Query: 166 SRPFLRCRREDIRSFLLQRN 185
             P    ++ +++    ++ 
Sbjct: 174 --PLGSLQKSEVKRIAEEQG 191


>gi|330827143|ref|YP_004390446.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans
           K601]
 gi|329312515|gb|AEB86930.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans
           K601]
          Length = 373

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 47/196 (23%), Gaps = 38/196 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
              ++V +SGG DS      L     +     +K               D+  Y      
Sbjct: 6   KQRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNW----------EDDDDSEYCSSRQD 55

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEH 113
               + V   + I    V++             RE +                     +H
Sbjct: 56  FLDAASVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDH 115

Query: 114 AKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           A  + A  I T H         T      +           +       L   +  P   
Sbjct: 116 AMRLGAEKIATGHYARVRHNPATGLFELLKGLDPAKDQSYFLHRLNQEQLARTLF-PVGE 174

Query: 172 CRREDIRSFLLQRNIS 187
            R+ ++R    +  + 
Sbjct: 175 LRKTEVRRIAEEIGLP 190


>gi|288958012|ref|YP_003448353.1| GMP synthase (glutamine-hydrolyzing) [Azospirillum sp. B510]
 gi|288910320|dbj|BAI71809.1| GMP synthase (glutamine-hydrolyzing) [Azospirillum sp. B510]
          Length = 522

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + D      + + I VD  L R    +EV 
Sbjct: 218 IRAQVGKGKVICGLSGGVDSSVAAVLIHEAIGD------QLTCIFVDTGLMRAGESEEV- 270

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH---------AKTINATLI 122
            V        I        +            E +  +I            AK   A  +
Sbjct: 271 -VRLFRDHYNIPLVHREAADLFLGKLAGVTDPEQKRKIIGGLFIEVFDEESAKVGGAEFL 329

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 330 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKLKLVEPLRELFKDEVRALGR 386

Query: 183 QRNISW 188
           +  +  
Sbjct: 387 ELGLPP 392


>gi|261345936|ref|ZP_05973580.1| GMP synthase [Providencia rustigianii DSM 4541]
 gi|282566021|gb|EFB71556.1| GMP synthase [Providencia rustigianii DSM 4541]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 21/193 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR- 63
           IE     ++  +   H+L+A+SGG DS    + LH  +  R       + + VD+  LR 
Sbjct: 214 IEDTVARLKEQIGDDHVLLALSGGVDSSVTALLLHRAIGKR------LTCVFVDNGLLRL 267

Query: 64  ETAKDEVR-YVSDVCSRLRIAHSVVSWKNSKPQTGL---MAAAREARYALISEH----AK 115
             A+  +  +       L I H+    +      G+       ++  +  I       +K
Sbjct: 268 NEAEQVMEMFAGKF--DLNIIHAKAQDRFMNALAGISDPEEKRKKIGHVFIEVFDEESSK 325

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             N   +     + D +E+    + + +  K          +  D+ L +  P     ++
Sbjct: 326 LPNIKWLAQGTIYPDIIESAASATGKAHVIKS---HHNVGGLPDDMKLGLVEPLKELFKD 382

Query: 176 DIRSFLLQRNISW 188
           ++R   L+  + +
Sbjct: 383 EVRKIGLELGLPY 395


>gi|194378708|dbj|BAG63519.1| unnamed protein product [Homo sapiens]
          Length = 594

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 131 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALDQEQVIAVHIDNGFMR---KRESQ 182

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 183 SVEEALKKLGIQVKVINAAHS 203


>gi|113953824|ref|YP_729973.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9311]
 gi|123327918|sp|Q0IC49|MNMA_SYNS3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|113881175|gb|ABI46133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. CC9311]
          Length = 391

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 56/197 (28%), Gaps = 33/197 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDE 69
           +R       + V +SGG DS      +     +     +             L + A   
Sbjct: 23  LRQWPGEHRVAVGLSGGVDSSLTAALMVEAGWEVEGLTLWLMSGKGACCAEGLVDAAG-- 80

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-----------------ISE 112
                 +C +L + H VV  +++  +  +       R  +                 ++ 
Sbjct: 81  ------ICQQLGVPHHVVDSRDTFVREIVQGLVDGYRAGITPLPCSKCNRSVKFGPMLAW 134

Query: 113 HAKTINATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             +  N   I T H      D+ E    +  R    +      + D +  ++   +  P 
Sbjct: 135 AEQERNLPRIATGHYARIRLDR-EDGRWKLLRGLDRRKDQSYFLYD-LPQEVLARVVFPL 192

Query: 170 LRCRREDIRSFLLQRNI 186
               + D R    +  +
Sbjct: 193 GELTKADTRLEAGRHGL 209


>gi|127512230|ref|YP_001093427.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella loihica PV-4]
 gi|226739730|sp|A3QCH0|GUAA_SHELP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|126637525|gb|ABO23168.1| GMP synthase (glutamine-hydrolyzing) [Shewanella loihica PV-4]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + + LH  +        K + + VD+  L
Sbjct: 212 SIIEDAVARIKEQVGDDEVILGLSGGVDSSVVAMLLHRAI------GSKLTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R   A   +           +    V  ++         A  EA+  +I +         
Sbjct: 266 RLNEADQVLEM---FGDHFGLNIVHVDAESRFLDALAGEAEPEAKRKIIGKVFVDIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K +NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 SRKCVNAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|332711800|ref|ZP_08431731.1| conserved hypothetical protein TIGR00268 [Lyngbya majuscula 3L]
 gi|332349778|gb|EGJ29387.1| conserved hypothetical protein TIGR00268 [Lyngbya majuscula 3L]
          Length = 275

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 52/178 (29%), Gaps = 39/178 (21%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVCS 78
           L+A SGG DS  +    + VLSDR        A++        +     +E+       +
Sbjct: 20  LIAYSGGVDSTLVAKIAYDVLSDR------VIAVT------AESPSLLPEELEDARIQAA 67

Query: 79  RLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            + I H VV                     +   +  +   A       ++     DD  
Sbjct: 68  TIGITHEVVQTHEMDNPNYTSNPVNRCYFCKSELHDTLKPLALERGYPYVVDGVNGDD-- 125

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
               +R  R          G+           ++   +   + ++R    Q  + W +
Sbjct: 126 ----LRDYR---------PGIQAAKERGARSPLAE--VGVTKAEVRQLSKQLGLPWWD 168


>gi|222149729|ref|YP_002550686.1| succinoglycan biosynthesis regulator [Agrobacterium vitis S4]
 gi|254764295|sp|B9JS46|QUEC_AGRVS RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|221736711|gb|ACM37674.1| succinoglycan biosynthesis regulator [Agrobacterium vitis S4]
          Length = 235

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ILV  SGG DS+ L      + ++          IS D+  R   K E+ + +    RL
Sbjct: 2  KILVVCSGGLDSVSLAD---KMAAEHEL----IGLISFDYGQRH--KKELDFAALAAKRL 52

Query: 81 RIAHSVVSWKN 91
           + H ++   N
Sbjct: 53 GVPHQIIDMTN 63


>gi|58040378|ref|YP_192342.1| GMP synthase [Gluconobacter oxydans 621H]
 gi|81351534|sp|Q5FPL0|GUAA_GLUOX RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|58002792|gb|AAW61686.1| GMP synthase [glutamine-hydrolyzing] [Gluconobacter oxydans 621H]
          Length = 533

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 59/185 (31%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    ++  +SGG DS      +H  + D      + + I VD  + R    DEV 
Sbjct: 229 IRKQVGSGRVICGLSGGVDSSVAAKLIHDAIGD------QLTCIFVDPGIMRTGEADEV- 281

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V     R  I                  + P+T      R        E AK   A  +
Sbjct: 282 -VKTFRGRFNIRLVHRDASELFLKELAGVTDPETKRKTIGRLFIEVFEEEAAKLGGAQFL 340

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R    
Sbjct: 341 AQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPDRMNMELVEPLRELFKDEVRMLGR 397

Query: 183 QRNIS 187
           +  I 
Sbjct: 398 ELGIP 402


>gi|17547141|ref|NP_520543.1| sulfate adenylyltransferase subunit 2 [Ralstonia solanacearum
           GMI1000]
 gi|17429443|emb|CAD16129.1| putative sulfate adenylyltransferase subunit 2 protein [Ralstonia
           solanacearum GMI1000]
          Length = 316

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H   E      + V+++ +RL +
Sbjct: 45  FSGGKDSIVMLHLALKAFRLGDRKIELPFPLVHIDTGHNYPEVIAFRDQRVAELGARLVV 104

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  ++     +M     D
Sbjct: 105 GHVEDSIKRGTVRLRRETDSRNAAQAVTLLETIESHGFDALMGGARRD 152


>gi|325273801|ref|ZP_08139989.1| GMP synthase [Pseudomonas sp. TJI-51]
 gi|324101060|gb|EGB98718.1| GMP synthase [Pseudomonas sp. TJI-51]
          Length = 525

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDE 69
           VR+ V  A++L+ +SGG DS  +   LH  + D      + + + VD+ L    E     
Sbjct: 221 VRAQVGSANVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLHEG-DQV 273

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAA----------REARYALISEHAKTIN 118
           +    +    + +   V+     K     L   A          R       +E +K  N
Sbjct: 274 MAMFKE---NMGVK--VIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDVFDAEASKLEN 328

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E+      +      +        +  ++NL +  P     ++++R
Sbjct: 329 IQFLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVR 385

Query: 179 SFLLQRNISW 188
              L+  + +
Sbjct: 386 KIGLELGLPY 395


>gi|325678174|ref|ZP_08157803.1| TIGR00268 family protein [Ruminococcus albus 8]
 gi|324110066|gb|EGC04253.1| TIGR00268 family protein [Ruminococcus albus 8]
          Length = 267

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 52/181 (28%), Gaps = 43/181 (23%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVCSRL 80
           A SGG DS  LL A    L D      +  A++        +    K E+     +C +L
Sbjct: 24  AFSGGVDSAFLLAAAKEALGD------EVIAVT------AVSPSLPKRELADAEALCRQL 71

Query: 81  RIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
            +  +V            K         +   +  I E A+      ++     DD    
Sbjct: 72  SVRLTVFQSDELELEEYRKNPKNRCYYCKHRLFTRILEIAEKNGLAHVIEGSNKDD---- 127

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDP 192
                       G    GM         L I  P       + +IR    +  +   + P
Sbjct: 128 -----------DGDYRPGMQALA----KLGIISPLRECGFTKAEIRRLSQEMGLPTYDKP 172

Query: 193 S 193
           S
Sbjct: 173 S 173


>gi|262376077|ref|ZP_06069308.1| tRNA methyl transferase [Acinetobacter lwoffii SH145]
 gi|262309171|gb|EEY90303.1| tRNA methyl transferase [Acinetobacter lwoffii SH145]
          Length = 379

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 56/196 (28%), Gaps = 40/196 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             VC ++ I     ++                AA R          E ++    +HA  +
Sbjct: 56  QAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVNL 115

Query: 118 NATLIMTAHTFDDQLETV-------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H    + ET+       Y    R           +      ++N  +  P  
Sbjct: 116 GADFIATGHYCR-RGETMTNSRGEEYAPLLRGVDNNKDQTYFLHAVHGREINKTLF-PVG 173

Query: 171 RCRREDIRSFLLQRNI 186
              +  +R    + ++
Sbjct: 174 EIEKPQVRKIAEELDL 189


>gi|190893557|ref|YP_001980099.1| succinoglycan biosynthesis transcriptional regulator protein
           [Rhizobium etli CIAT 652]
 gi|254764371|sp|B3Q0Y0|QUEC_RHIE6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|190698836|gb|ACE92921.1| succinoglycan biosynthesis transcriptional regulator protein
           [Rhizobium etli CIAT 652]
          Length = 236

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS+ L   + +              +S D+  R   + E+ + +   +RL 
Sbjct: 4   IVV-CSGGLDSVSLAHKMAAEQQL-------IGLVSFDYGQRH--RKELDFAARCAARLA 53

Query: 82  IAHSVVSWKNSKPQTGLMA 100
           + H ++            A
Sbjct: 54  VPHHIIDIAAIGGHLSGSA 72


>gi|222112576|ref|YP_002554840.1| tRNA-specific 2-thiouridylase mnma [Acidovorax ebreus TPSY]
 gi|254811451|sp|B9MIA2|MNMA_DIAST RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|221732020|gb|ACM34840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax ebreus TPSY]
          Length = 370

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 46/196 (23%), Gaps = 38/196 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
              ++V +SGG DS      L     +     +K               D+  +      
Sbjct: 3   KHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNW----------EDDDDSEFCSSRQD 52

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEH 113
               + V   + I    V++             RE +                     +H
Sbjct: 53  FLDAASVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDH 112

Query: 114 AKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           A  + A  I T H         T      +           +       L+  +  P   
Sbjct: 113 AMRLGAEKIATGHYARVRQNPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLF-PVGD 171

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R       + 
Sbjct: 172 LHKTEVRRIAADIGLP 187


>gi|167765182|ref|ZP_02437295.1| hypothetical protein BACSTE_03568 [Bacteroides stercoris ATCC
           43183]
 gi|167696810|gb|EDS13389.1| hypothetical protein BACSTE_03568 [Bacteroides stercoris ATCC
           43183]
          Length = 517

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIETTVAQLKEQLGDDKVVLGLSGGVDSSVAAVLLNRAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKD 254


>gi|110816227|sp|Q5L1C0|QUEC_GEOKA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
          Length = 221

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 56/194 (28%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS   L       + + FG+++  A++ D+  R   + E+     +   L 
Sbjct: 7   VVV-FSGGQDSTTCLF-----WAKKQFGEVE--AVTFDYGQRH--RREIDVAQAIADELG 56

Query: 82  IAHSVVSWKNSKPQTGLMAAAREAR--------------------YALISEHAKTINATL 121
           + H+V+               R+                       +  +  AK   A  
Sbjct: 57  VRHTVLDLSLLGQLAPNALTRRDIAIEQKKGELPTTFVDGRNLLFLSFAAVFAKQRGARH 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLR 171
           I+T        ET              G     D  +  LN+           I  P + 
Sbjct: 117 IVTG-----VCET-----------DFSGYPDCRDVFIKSLNVTLNLAMDYEFVIHTPLMW 160

Query: 172 CRREDIRSFLLQRN 185
             + +      +  
Sbjct: 161 LTKAETWKLADELG 174


>gi|226944910|ref|YP_002799983.1| tRNA-specific 2-thiouridylase MnmA [Azotobacter vinelandii DJ]
 gi|226719837|gb|ACO79008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Azotobacter vinelandii DJ]
          Length = 372

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 46/201 (22%)

Query: 17  VYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AK 67
                ++V +SGG DS    LL+       +  F K             E        AK
Sbjct: 4   PAHTRVIVGMSGGVDSSVSALLLLQQGYQVEGLFMK----------NWEEDDGTEYCTAK 53

Query: 68  DEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALIS 111
           +++     VC R+ +     +     W N          A           RE ++    
Sbjct: 54  EDLADAQAVCDRIGMRLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFL 113

Query: 112 EHAKTINATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           ++A ++ A +I T H       +D+ E   ++      ++   L  +    L        
Sbjct: 114 DYALSLGADMIATGHYVRRRDAEDRTE--LLKGLDPNKDQSYFLHAVASEQLAKS----L 167

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     +  +R+      ++
Sbjct: 168 FPVGELEKPAVRAIAELHGLA 188


>gi|332706057|ref|ZP_08426129.1| glutamine-hydrolyzing GMP synthase [Lyngbya majuscula 3L]
 gi|332355149|gb|EGJ34617.1| glutamine-hydrolyzing GMP synthase [Lyngbya majuscula 3L]
          Length = 547

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  VR+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 232 EAIRE-VRAKVGEKRVLLALSGGVDSSTLAFLLHRAIGDK 270


>gi|330446458|ref|ZP_08310110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490649|dbj|GAA04607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 371

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMK--------NWEEDDNDEYCSAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            + A  I   H
Sbjct: 119 VLEADYIAMGH 129


>gi|298504665|gb|ADI83388.1| adenosine nucleotide alpha-hydrolase superfamily protein [Geobacter
           sulfurreducens KN400]
          Length = 269

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 54/193 (27%), Gaps = 40/193 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++  +R +     +LVA SGG DS  LL   H +L D++      S           +
Sbjct: 9   EQLKAILREM---GSVLVAFSGGVDSTFLLRVAHDLLGDKAVAFTATSPTY------PES 59

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-------LISEHAKTINA 119
             E R    +   +  A  VV   N     G     R   Y        L    A  +  
Sbjct: 60  --EFREAVGLARSMG-ARQVVVESNELEIPGFAFNPRNRCYHCKKELFGLCGRTAAELGL 116

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDI 177
             +      DD                   L            L +  P +     + DI
Sbjct: 117 AWVADGSNCDD-------------------LDDYRPGRAAAGELGVRSPLVEAGLTKADI 157

Query: 178 RSFLLQRNISWCE 190
           R    +  +   +
Sbjct: 158 RELSRELGLPTWD 170


>gi|224538422|ref|ZP_03678961.1| hypothetical protein BACCELL_03316 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519957|gb|EEF89062.1| hypothetical protein BACCELL_03316 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 517

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIETTVAELKEQLGDDKVVLGLSGGVDSSVAAVLLNRAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|192896495|gb|ACF06644.1| ToyM [Streptomyces rimosus]
          Length = 238

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V +SGG DS  LL       +  +  + + +A++VD+  R   + E+     +     
Sbjct: 14 VVV-LSGGMDSTTLL-------AHYAMLRYRLTAVTVDYGQRH--RREIDAARTIAGHYG 63

Query: 82 IAHSVVS 88
            H VV 
Sbjct: 64 AEHHVVD 70


>gi|189467907|ref|ZP_03016692.1| hypothetical protein BACINT_04299 [Bacteroides intestinalis DSM
           17393]
 gi|189436171|gb|EDV05156.1| hypothetical protein BACINT_04299 [Bacteroides intestinalis DSM
           17393]
          Length = 517

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIETTVAELKEQLGDDKVVLGLSGGVDSSVAAVLLNRAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|209551069|ref|YP_002282986.1| exsB protein [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|254764372|sp|B5ZR38|QUEC_RHILW RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|209536825|gb|ACI56760.1| exsB protein [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 236

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS+ L    H + +++         +S D+  R   + E+ + +   +RL 
Sbjct: 4   IVV-CSGGLDSVSLA---HKIAAEQQL----IGLVSFDYGQRH--RKELDFAARCAARLA 53

Query: 82  IAHSVVSWKNSKPQTGLMA 100
           + H ++            A
Sbjct: 54  VPHHIIDISAIGGHLSGSA 72


>gi|90579124|ref|ZP_01234934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio angustum S14]
 gi|90439957|gb|EAS65138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio angustum S14]
          Length = 371

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMK--------NWEEDDNDEYCSAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            + A  I   H
Sbjct: 119 VLEADYIAMGH 129


>gi|89073381|ref|ZP_01159905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium sp. SKA34]
 gi|89050868|gb|EAR56342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium sp. SKA34]
          Length = 371

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMK--------NWEEDDNDEYCSAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            + A  I   H
Sbjct: 119 VLEADYIAMGH 129


>gi|298206785|ref|YP_003714964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Croceibacter atlanticus HTCC2559]
 gi|83849417|gb|EAP87285.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Croceibacter atlanticus HTCC2559]
          Length = 396

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 59/196 (30%), Gaps = 42/196 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHCLRETAKD--EVRYVSD 75
           ++V +SGG DS      L     +             +++ D C      D  +   V  
Sbjct: 4   VVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDTVTISDEC--PWLDDSNDAMLV-- 59

Query: 76  VCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHAKTINA 119
              +L I    V       +                       RE ++ +  + A ++ A
Sbjct: 60  -AEKLGIPFQTVDLSEEYKERIVDYMFNEYKNGRTPNPDVLCNREIKFDVFMKIAMSLGA 118

Query: 120 TLIMTAH-------TFDDQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             + T H         D   ET+   +  + +  ++   L  +    L         P  
Sbjct: 119 DYVATGHYCRKSSIEKD--GETIYQLLSGKDNNKDQSYFLCQLSQEQLSKT----LFPIG 172

Query: 171 RCRREDIRSFLLQRNI 186
             ++ ++R    ++++
Sbjct: 173 ELQKSEVRKIAAEQDL 188


>gi|262306009|gb|ACY45597.1| gln amidotransferase [Amblyomma sp. 'Amb2']
          Length = 196

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R  V  + +L+ VSGG DS      LH  L +      +  A+ +D+   R   KDE 
Sbjct: 36  YIRRTVGQSKVLMLVSGGVDSTVCAALLHKALRED-----QVIALHIDNGFMR---KDES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V     +L ++  +V 
Sbjct: 88  VQVEQSLRQLGLSLRMVD 105


>gi|124262876|ref|YP_001023346.1| hypothetical protein Mpe_B0336 [Methylibium petroleiphilum PM1]
 gi|124262122|gb|ABM97111.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 341

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 16/81 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAK--DE---VRY 72
            +L+  SGG DS+  ++ L  +   +   ++        H L   RE ++  D      Y
Sbjct: 30  RVLIFFSGGKDSVACVLHLLELGVPKERIEL-------HHHLIDGREGSELMDWPVTEAY 82

Query: 73  VSDVCSRLRIAHSVVSWKNSK 93
                  + I     SWK   
Sbjct: 83  CKAFADAMGIPI-TFSWKQGG 102


>gi|322389543|ref|ZP_08063093.1| GMP synthase [Streptococcus parasanguinis ATCC 903]
 gi|321143737|gb|EFX39165.1| GMP synthase [Streptococcus parasanguinis ATCC 903]
          Length = 519

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 65/194 (33%), Gaps = 34/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+    E  
Sbjct: 220 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKG---EAN 270

Query: 72  YVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V D +  +  +  ++V    +K           P+        E  Y    E +K  + 
Sbjct: 271 QVMDMLGGKFGL--NIVKADAAKRFLDKLAGVSDPEKKRKIIGNEFVYVFDDEASKLKDV 328

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +  D+   +  P     ++++R+
Sbjct: 329 KFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRA 382

Query: 180 FLLQRN----ISWC 189
              +      I W 
Sbjct: 383 LGTELGMPDHIVWR 396


>gi|295086827|emb|CBK68350.1| GMP synthase (glutamine-hydrolyzing) [Bacteroides xylanisolvens
           XB1A]
          Length = 507

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKEQLGDDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|288556799|ref|YP_003428734.1| Queuosine biosynthesis protein QueC [Bacillus pseudofirmus OF4]
 gi|288547959|gb|ADC51842.1| Queuosine biosynthesis protein QueC [Bacillus pseudofirmus OF4]
          Length = 222

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  AL            + + ++ D+  R +   E+     +   L
Sbjct: 7  VVV-FSGGQDSTTCLFWALKEFK--------EVATVTFDYGQRHS--KEIECARKIADEL 55

Query: 81 RIAHSVVS 88
           ++  V+ 
Sbjct: 56 GVSFHVLD 63


>gi|320009022|gb|ADW03872.1| GMP synthase, large subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 528

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 69/190 (36%), Gaps = 24/190 (12%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDE 69
             +R  V     +  +SGG DS     A+ + L  ++ G  + + + VDH L R+   ++
Sbjct: 218 ALIREQVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLMRKGETEQ 271

Query: 70  VR--YVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARY---ALISEHAKTINA 119
           V   +V+   ++L++  +   + +     S P+       RE          E  +    
Sbjct: 272 VEKDFVAATGAKLKVVDAEKRFLDALAGVSDPEQKRKIIGREFIRVFEQAQLEILQEEGP 331

Query: 120 TL--IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            +  ++    + D +E+             +        +  D+   +  P  +  ++++
Sbjct: 332 EVAFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDIEFELVEPLRQLFKDEV 386

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 387 RMVGQELGLP 396


>gi|237715568|ref|ZP_04546049.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. D1]
 gi|262408577|ref|ZP_06085123.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|294647045|ref|ZP_06724658.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809879|ref|ZP_06768555.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298481412|ref|ZP_06999604.1| GMP synthase [Bacteroides sp. D22]
 gi|229444277|gb|EEO50068.1| bifunctional GMP synthase/glutamine amidotransferase [Bacteroides
           sp. D1]
 gi|262353442|gb|EEZ02536.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22]
 gi|292637622|gb|EFF56027.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442908|gb|EFG11699.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|298272276|gb|EFI13845.1| GMP synthase [Bacteroides sp. D22]
          Length = 507

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    ++  +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIESTVAELKEQLGDDKVVLGLSGGVDSSVAAVLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|140063954|gb|ABO82466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Liberibacter asiaticus]
          Length = 408

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 65/211 (30%), Gaps = 55/211 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAK--------DE 69
            ++VA+SGG DS  +   L                ++V   L   R+ +K         +
Sbjct: 22  RVVVAMSGGVDSSVVAALLKR-------DGYDVIGVTV--QLYNSRKASKRKGSCCAGQD 72

Query: 70  VRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAA----------REARYALISEH 113
           V     VC  + ++H V  ++         P     AA           R  +++ +   
Sbjct: 73  VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR------ 167
            + + A ++ T H        +  R       K   +      +  D + ++        
Sbjct: 133 TRQLGADVLATGHY-------IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185

Query: 168 -----PFLRCRREDIRSFLLQRNISWCEDPS 193
                P    ++E +R    +  +    D S
Sbjct: 186 CDLRFPLGDMKKESVRDLAREMGLD-IADKS 215


>gi|45358802|ref|NP_988359.1| hypothetical protein MMP1239 [Methanococcus maripaludis S2]
 gi|45047668|emb|CAF30795.1| Conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 258

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E     +        ++VA SGG DS         ++S  +    +  A+++D+
Sbjct: 4   MEKGLLEKYNSLL-EFFKNKKVIVAYSGGVDST--------LISKIASDNAQTLAVTIDN 54

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAK 115
                +++ ++   +   +  I    +         SK         ++     +     
Sbjct: 55  GF--FSENVIKKAENRAKKYNIPQKTIKIDYLNEITSKDLENRCYNCKKRIAEELKRIKN 112

Query: 116 TINATLIMTAHTFDDQLE 133
            +N  +I+    +DD  E
Sbjct: 113 ELNYDIIVDGTIYDDIFE 130


>gi|283853712|ref|ZP_06370941.1| ExsB family protein [Desulfovibrio sp. FW1012B]
 gi|283570890|gb|EFC18921.1| ExsB family protein [Desulfovibrio sp. FW1012B]
          Length = 201

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +V  + IL+  SGG DS  L            F K    A ++D+  ++ A  E+R    
Sbjct: 1   MVKNSAILL--SGGMDSTSLA-----------FWKKPNFAFTIDYG-QKAAMAEIRAARQ 46

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAR 103
           V   + I+H  ++   S   +G MA A 
Sbjct: 47  VAKEIGISHDTIAIDCSSLGSGDMAMAA 74


>gi|302340314|ref|YP_003805520.1| PP-loop domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637499|gb|ADK82926.1| PP-loop domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 293

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 56/206 (27%), Gaps = 50/206 (24%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-----S 57
           ++  +     +  +     + +A SGG DS  L  A       R    I  S +      
Sbjct: 19  MTIQDKYNKLLEHISAYERVAIAFSGGVDSTFLCRAAMEASCLR---PIAISLVSPFIPH 75

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
                      EV    D+  ++ I H  +  +                    +   +  
Sbjct: 76  ----------REVEEAKDLAKKIGIEHVCIQAQLLSETV------------AANPKDRCY 113

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN--------LWISRPF 169
           +   I+          T  +++   Y   G  L G      YD          L I  P 
Sbjct: 114 HCKRIVF---------TTLLQTAAGYGI-GTILDGSNADDRYDYRPGMRALAELGIHSPL 163

Query: 170 LRC--RREDIRSFLLQRNISWCEDPS 193
           L     + +IR      ++     PS
Sbjct: 164 LEIGLGKNEIRELSKILHLPTWNKPS 189


>gi|300690713|ref|YP_003751708.1| ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase)
           [Ralstonia solanacearum PSI07]
 gi|299077773|emb|CBJ50411.1| ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase)
           [Ralstonia solanacearum PSI07]
          Length = 316

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H   E      + V+++ +RL +
Sbjct: 45  FSGGKDSIVMLHLALKAFRLGDRKIELPFPLVHIDTGHNYPEVIAFRDQRVAELGARLVV 104

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  ++     +M     D
Sbjct: 105 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIESHGFDALMGGARRD 152


>gi|294339421|emb|CAZ87777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiomonas sp. 3As]
          Length = 368

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 49/194 (25%), Gaps = 44/194 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-------- 73
           ++V +SGG DS      L           +K               D+  Y         
Sbjct: 9   VVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNW----------EDDDDSEYCSTRQDWLD 58

Query: 74  -SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKT 116
            + V  R+ I    V++     +       RE                       +HA  
Sbjct: 59  AASVADRIGIDIEAVNFAAEYKERVFAEFLREYAAGRTPNPDVLCNAEIKFKAFLDHAMR 118

Query: 117 INATLIMTAHTFDDQLETV----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           + A  I T H      ET      +R      ++   L  +    L         P    
Sbjct: 119 LGADRIATGHYAR-VRETDHGFELLRGLDASKDQSYFLHRLNQAQLART----LFPVGEL 173

Query: 173 RREDIRSFLLQRNI 186
            + ++R       +
Sbjct: 174 NKTEVRKVAETIGL 187


>gi|167626941|ref|YP_001677441.1| tRNA-specific 2-thiouridylase MnmA [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189040504|sp|B0TW32|MNMA_FRAP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167596942|gb|ABZ86940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 359

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 49/206 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----VRY---V 73
            I+V +SGG DS    + L     D +   +K           E   DE     ++    
Sbjct: 5   KIIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQHIADA 56

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKTI 117
             VC  + I    +++                 A R          E ++     +   +
Sbjct: 57  QAVCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLL 116

Query: 118 NATLIMTAHTF-----DD---QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               I T H       DD   Q     ++   D  ++   L  +    L         P 
Sbjct: 117 GGDYIATGHYARTKVIDDGSVQ----LVKGLDDSKDQTYFLYTLGQEQLKQTMF----PI 168

Query: 170 LRCRREDIRSFLLQRNISWCE--DPS 193
               +  +R    + N+   +  D +
Sbjct: 169 GDIEKSRVREIAKENNLVTFDKKDST 194


>gi|150025823|ref|YP_001296649.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Flavobacterium psychrophilum JIP02/86]
 gi|205816862|sp|A6H0G9|MNMA_FLAPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149772364|emb|CAL43842.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 395

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 25/128 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHC-LRETAKDEVRYVS 74
             ++V +SGG DS      L     +            ++++ + C   E + D    V 
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLQEQGYEVIGLFMKNWHDDSVTISNECPWLEDSND-ALLV- 59

Query: 75  DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTIN 118
               +L I    V       +                       RE ++ +  + A ++ 
Sbjct: 60  --AEKLGIPFQTVDLSQQYQEKIVDYMFSEYKKGRTPNPDVLCNREIKFDVFMKIALSLG 117

Query: 119 ATLIMTAH 126
           A  + T H
Sbjct: 118 ADYVATGH 125


>gi|146297250|ref|YP_001181021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|205814264|sp|A4XLP5|MNMA_CALS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145410826|gb|ABP67830.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 361

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 49/204 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------- 65
              +LVA+SGG DS      L     +     ++          +               
Sbjct: 2   KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQI--------WQNECGEELITGKSCCS 53

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARY 107
             A D+ R V+++   L I + V + K+   +                       R+ ++
Sbjct: 54  IYAVDDARKVANI---LDIPYYVFNMKDDFRKIVIDYFIDEYIKGRTPNPCIMCNRKIKF 110

Query: 108 ALISEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
            L  + A  I    I T H      D  L    ++  +   +    +       +    L
Sbjct: 111 ELFLKKAIAIGMDYIATGHYAIIEYDSSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTL 170

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
           +   P  R  ++++R    +  + 
Sbjct: 171 F---PLGRFSKDEVRKLAEKFKLP 191


>gi|330685228|gb|EGG96890.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Staphylococcus epidermidis VCU121]
          Length = 513

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYV-S 74
           V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D    V  
Sbjct: 216 VGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD---MVME 266

Query: 75  DVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  +    V+ ++         S P+        E  Y    E +K      +   
Sbjct: 267 QFGEGFNMNIIRVNAQDRFMKKLAGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQG 326

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E            + +        +  D+   +  P     ++++R+  ++  
Sbjct: 327 TLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALGIELG 380

Query: 186 IS 187
           I 
Sbjct: 381 IP 382


>gi|325478807|gb|EGC81917.1| TIGR00268 family protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 286

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 65/195 (33%), Gaps = 34/195 (17%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +   ++ L+     ++A SGG DS      +  + SD    +    AI   +    T 
Sbjct: 9   EKLNKRIKELLED-KFVLAFSGGVDS----SLILKLASDLREEENDVVAIM--YNTNTTP 61

Query: 67  KDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAREARYALISEHAK---TINAT 120
             ++    ++   + +   VV+   + N   +   +      +  L  +  K    +   
Sbjct: 62  DGDLDNAQNLADDMDVKLEVVNIDVFDNEHIKNNTIDRCYHCKSFLFEQAFKLKDKLGYK 121

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
            ++     DD       +  R       G+  + D         +  P       +E +R
Sbjct: 122 YVVDGSNLDDN------KVFRP------GVKALNDK-------GVVSPLKECGFTKEMVR 162

Query: 179 SFLLQRNISWCEDPS 193
           ++  +  +S  + PS
Sbjct: 163 AYAKELGVSVYKRPS 177


>gi|313902383|ref|ZP_07835786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467314|gb|EFR62825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 404

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 57/207 (27%), Gaps = 49/207 (23%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSD------------------RSFGKIKFSAI 56
           S      +L A+SGG DS  +   L     +                  R  G    SA+
Sbjct: 2   SQGRKGRVLAAMSGGVDSSVMAALLRDQGYEVIGVTMQTWPAMEPEDEARYGGCCSLSAV 61

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAA 101
                      D+ R V     RL I + V++ +    +                    A
Sbjct: 62  -----------DDARRV---AERLGIPYYVMNMRQDFEEKVIDYFVAEYLQGRTPNPCIA 107

Query: 102 A-REARYALISEHAKTINATLIMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILY 159
             R  ++      A+ +    + T H    + +    R   R  A++    + +      
Sbjct: 108 CNRYIKFDEFLRRAEALGCDYVATGHYAIVEYDEALGRFILRKSADRRKDQTYVLYNFTQ 167

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNI 186
           +       P  R  +  +R       +
Sbjct: 168 EQLARTLLPIGRFEKSQVRQLAEAYGL 194


>gi|239637212|ref|ZP_04678200.1| GMP synthase [Staphylococcus warneri L37603]
 gi|239597168|gb|EEQ79677.1| GMP synthase [Staphylococcus warneri L37603]
          Length = 513

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 26/182 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYV-S 74
           V    +L A+SGG DS  + + LH  + D      + + I VDH L R+   D    V  
Sbjct: 216 VGDRKVLCAMSGGVDSSVVAVLLHKAIGD------QLTCIFVDHGLLRKGEGD---MVME 266

Query: 75  DVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
                  +    V+ ++         S P+        E  Y    E +K      +   
Sbjct: 267 QFGEGFNMNIIRVNAQDRFMKKLAGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQG 326

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E            + +        +  D+   +  P     ++++R+  ++  
Sbjct: 327 TLYTDVIE------SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALGIELG 380

Query: 186 IS 187
           I 
Sbjct: 381 IP 382


>gi|160872414|ref|ZP_02062546.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) (gmps) [Rickettsiella grylli]
 gi|159121213|gb|EDP46551.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) (gmps) [Rickettsiella grylli]
          Length = 523

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           +R+ V    +L+A+SGG DS  L   LH  +  +
Sbjct: 219 IRTNVGKEKVLLALSGGVDSTVLAALLHKAIGKQ 252


>gi|83945246|ref|ZP_00957595.1| GMP synthase [Oceanicaulis alexandrii HTCC2633]
 gi|83851416|gb|EAP89272.1| GMP synthase [Oceanicaulis alexandrii HTCC2633]
          Length = 522

 Score = 46.8 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 31/190 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEV 70
           +R  V    ++  +SGG DS    + +H  + D      + + + VD  L     A   V
Sbjct: 218 IREQVGSGRVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDTGLMRSGEADQVV 271

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-----REARY-------ALISEHAKTI- 117
               +      I          + +  L A A      + R         +  + AK + 
Sbjct: 272 TLFRE---HYNIPL----VAADEEERFLSALAGESDPEKKRKTIGKLFIDVFEDKAKGVG 324

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  +     + D +E+V            +        +   +N+ +  P     ++++
Sbjct: 325 GADFLAQGTLYPDVIESVSFD---GGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEV 381

Query: 178 RSFLLQRNIS 187
           R+   +  + 
Sbjct: 382 RALGRELGLP 391


>gi|332974491|gb|EGK11413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desmospora sp. 8437]
          Length = 352

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 55/194 (28%), Gaps = 38/194 (19%)

Query: 27  SGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           SGG DS    + L         +         +    +        A ++   V  V  +
Sbjct: 2   SGGVDSSVAALLLKEQGYDVIGLFMKNWDDTDELGNCT--------ATEDFEDVRRVAGQ 53

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTINATLIM 123
           L I +  V+++                  R          E ++    E A  + A  I 
Sbjct: 54  LGIPYYSVNFEKEYRDKVFQYFLDEYEKGRTPNPDVMCNKEIKFGEFMEKALQLGADYIA 113

Query: 124 TAHTFDDQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           T H    +LE      R  R           +       L+  +  P     ++++R   
Sbjct: 114 TGHYA--RLEKTDGSHRLLRGADPNKDQTYFLYTLGQEQLSKTLF-PIGHLHKKELRKIA 170

Query: 182 LQRNISWCE--DPS 193
            +  ++  E  D +
Sbjct: 171 EEAGLATAEKKDST 184


>gi|150398787|ref|YP_001322554.1| GMP synthase subunit B [Methanococcus vannielii SB]
 gi|166215315|sp|A6UN70|GUAAB_METVS RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|150011490|gb|ABR53942.1| GMP synthase, large subunit [Methanococcus vannielii SB]
          Length = 310

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 72/199 (36%), Gaps = 32/199 (16%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF   S IE     ++  +     ++A+SGG DS        +VL+ ++ G  +  A+ V
Sbjct: 1   MFDAKSFIEESVEDIKKQINGRKTIIALSGGVDSSV-----AAVLTGKAIGD-QLLAVYV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYA 108
           D  L R+   +E+  +     ++ +   +V  K+           P+       R     
Sbjct: 55  DTGLMRKNESNEIWNIFK--EQMGLNLKIVEAKDLFLSELAGIDDPEQKRKIIGRIF-IE 111

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +  + AK     +++      D +E+           +G   +     +   + L +  P
Sbjct: 112 VFEKVAKEQGEEILVQGTIAPDWIES-----------EGQIKTHHNIALPSGMVLEVVEP 160

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R    +  + 
Sbjct: 161 LRDLYKDEVRKLATELGLP 179


>gi|86140336|ref|ZP_01058895.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832278|gb|EAQ50727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leeuwenhoekiella blandensis MED217]
          Length = 399

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 40/195 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHCLRETAKD--EVRYVSD 75
           ++V +SGG DS      L     +            ++++ D C      D  +   V  
Sbjct: 4   VVVGLSGGVDSSVSAYLLKEAGYNVIGLFMKNWHDDSVTISDEC--PWLDDSNDAMLV-- 59

Query: 76  VCSRLRIAHSVVSWKNSKPQT-------GLMAAA---------REARYALISEHAKTINA 119
              +L I    V       +                       RE ++ +  + A  + A
Sbjct: 60  -AEKLGIPFQTVDLSEQYKERIVDYMFWEYEMGRTPNPDVLCNREIKFDVFMKIALDLGA 118

Query: 120 TLIMTAHTFDDQLET--------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             + T H    + ET          +       ++   L  +    L         P   
Sbjct: 119 DYVATGHYCQ-RGETEIDGKPVYQLLAGADANKDQSYFLCQLSQEQLAKT----LFPIGH 173

Query: 172 CRREDIRSFLLQRNI 186
            ++ ++R     +++
Sbjct: 174 LQKSEVRKIAKAQDL 188


>gi|327401838|ref|YP_004342677.1| GMP synthase subunit B [Archaeoglobus veneficus SNP6]
 gi|327317346|gb|AEA47962.1| GMP synthase (glutamine-hydrolyzing) subunit B [Archaeoglobus
           veneficus SNP6]
          Length = 303

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 31/194 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             +E     +R  V     ++A+SGG DS    +  +  + DR         + VD  L 
Sbjct: 5   KFVEQAIQEIREKVKDGKAIIALSGGVDSSVCTVLAYKAIGDRLIP------VFVDTGLM 58

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAR---EARYALISEHAKT 116
           RE    E   V ++   + +         ++  K  T      +   E    +    A+ 
Sbjct: 59  REG---EPERVKEIFGHMNLVFVDAKDEFFEALKGVTDPEEKRKIVGELFVRVFERVAEE 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISRPFLRCR 173
             A  ++    + D +E++             G+    +   + L+     +  P     
Sbjct: 116 YKAEYLIQGTIYPDIIESM------------GGIKSHHNVGGFPLHYKFKDVIEPLRELY 163

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 164 KDEVREVARYLGLP 177


>gi|306843409|ref|ZP_07476010.1| exsB protein [Brucella sp. BO1]
 gi|306276100|gb|EFM57800.1| exsB protein [Brucella sp. BO1]
          Length = 232

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H + ++     +    +S D+  R   + E+ +      RL + H 
Sbjct: 7  CSGGLDSVSLA---HKMAAEHELTGL----LSFDYGQRH--RKELDFAQACAKRLGVPHQ 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDIR 62


>gi|284052412|ref|ZP_06382622.1| GMP synthase [Arthrospira platensis str. Paraca]
 gi|291570501|dbj|BAI92773.1| GMP synthase (glutamine-hydrolyzing) [Arthrospira platensis
           NIES-39]
          Length = 541

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  +R  V    +L+A+SGG DS  L   LH  + D+
Sbjct: 226 EAIRE-IRGKVGDKRVLLALSGGVDSSTLAFLLHQAIGDQ 264


>gi|254718022|ref|ZP_05179833.1| exsB protein [Brucella sp. 83/13]
 gi|265982970|ref|ZP_06095705.1| queuosine biosynthesis protein queC [Brucella sp. 83/13]
 gi|306839803|ref|ZP_07472604.1| exsB protein [Brucella sp. NF 2653]
 gi|264661562|gb|EEZ31823.1| queuosine biosynthesis protein queC [Brucella sp. 83/13]
 gi|306405158|gb|EFM61436.1| exsB protein [Brucella sp. NF 2653]
          Length = 232

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H + ++     +    +S D+  R   + E+ +      RL + H 
Sbjct: 7  CSGGLDSVSLA---HKMAAEHELTGL----LSFDYGQRH--RKELDFAQACAKRLGVPHQ 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDIR 62


>gi|182679806|ref|YP_001833952.1| GMP synthase, large subunit [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182635689|gb|ACB96463.1| GMP synthase, large subunit [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 533

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 58/193 (30%), Gaps = 28/193 (14%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKD 68
             +++ V    +L  +SGG DS    + +H  + DR       + + VDH L     A  
Sbjct: 222 AAIQAKVGTGRVLCGLSGGVDSAVAALLIHEAIGDR------LTCVFVDHGLLRHGEA-- 273

Query: 69  EVRYVSDVCSRLRIAH-----SVVSWKNSKPQTGLMAAAREARYAL---ISEHAKTINAT 120
               VS       I         +        +      R             AKTI + 
Sbjct: 274 -EEIVSLFRGHYNIPLIHAQAQDLFLDALAGVSDPEEKRRIIGRLFIETFEAEAKTIASD 332

Query: 121 ------LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +     + D +E+V   S        +        +   +N+ +  P     +
Sbjct: 333 GKGVPEFLGQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFK 389

Query: 175 EDIRSFLLQRNIS 187
           +++R    +  + 
Sbjct: 390 DEVRELGRELGLP 402


>gi|197121929|ref|YP_002133880.1| GMP synthase [Anaeromyxobacter sp. K]
 gi|196171778|gb|ACG72751.1| GMP synthase, large subunit [Anaeromyxobacter sp. K]
          Length = 518

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 26/195 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+    +R+ V   H++ A+SGG DS    + +H  + DR         I VD+  LR  
Sbjct: 205 EAAVEQIRAQVKDGHVICALSGGVDSAVAALLVHRAIGDR------LRCIFVDNGVLRAG 258

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE------------- 112
            + +V  V    +   +    V                E +  +I               
Sbjct: 259 ERQQVEDV--FGAMFHLPLVTVDASRRFLGALAGVTDPERKRKIIGHEFIAVFEQEVERL 316

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A    A  ++    + D +E+V  R      +    + G+ +     +NL +  P    
Sbjct: 317 AAHGARAKFLVQGTLYPDVIESVSFRGPSATIKSHHNVGGLPEK----MNLSLVEPLREL 372

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   L+  + 
Sbjct: 373 FKDEVRQLGLELGLP 387


>gi|325528227|gb|EGD05401.1| GMP synthase [Burkholderia sp. TJI49]
          Length = 539

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 25/199 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFQG-RLHAKVVHVDASEQFLGHLAGVTDPEQKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNISW 188
               ++++R   +   +  
Sbjct: 372 RDLFKDEVRELGVALGLPP 390


>gi|312127332|ref|YP_003992206.1| PP-loop domain-containing protein [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777351|gb|ADQ06837.1| PP-loop domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 289

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 94/281 (33%), Gaps = 62/281 (22%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E ++  ++       +LVA SGG DS  LL     VL +++      S       L 
Sbjct: 30  EKLERLKEIIKDY---ESVLVAFSGGVDSTFLLKVSFDVLGEKAIAVFSSSV------LS 80

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKTI 117
              + E    + +   +     V+       +  +        Y        +    + +
Sbjct: 81  PQREKEDA--AKLAKDIGARLIVIERDVFSNEDFMKNDRLRCYYCKKDLIKRLKVLKEEL 138

Query: 118 NATLIMTAHTFDD-------------------QLETVYMRSQRDYAEKGMGLS------- 151
           N   I+     DD                    +ET   + +  Y  K  GLS       
Sbjct: 139 NLNEIVEGSNIDDLQDFRPGRKAFEEEGIKSPLVETGLTKEEIRYLSKEFGLSTYQKHSS 198

Query: 152 -GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRD 210
             +   I Y   + + +  +   + +   FL+Q+              F +VRVR     
Sbjct: 199 ACLVTRIPYGDEITLEKLQM-IEKAE--DFLVQKG-------------FSQVRVRHHGAI 242

Query: 211 IDLHALYLKMKKFQDLRV--KVNNAVAMLIPKYLTVHMRSI 249
             +     ++ KF DL++  +V+NA+  L  KY+T+ +   
Sbjct: 243 ARIEVAKEELSKFFDLKLLDEVSNALKALGFKYVTLDLSGY 283


>gi|163738315|ref|ZP_02145730.1| ExsB [Phaeobacter gallaeciensis BS107]
 gi|161388236|gb|EDQ12590.1| ExsB [Phaeobacter gallaeciensis BS107]
          Length = 232

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L   L +       G++    +S D+  R   + E+ Y +    RL + H 
Sbjct: 7  CSGGLDSVSLAHVLAA------KGQLS-RLVSFDYGQRH--RKELDYAAACGQRLGVPHE 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDMR 62


>gi|148379169|ref|YP_001253710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931319|ref|YP_001383546.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936775|ref|YP_001387095.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str.
           Hall]
 gi|205810260|sp|A7FT69|MNMA1_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|205810283|sp|A5I123|MNMA1_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|148288653|emb|CAL82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927363|gb|ABS32863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932689|gb|ABS38188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A str. Hall]
          Length = 356

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 67/242 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVDHC 61
              +LV +SGG DS      L                      ++  G    SA+     
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAV----- 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREA- 105
                  + R V++   ++ I   V+++K++  +                    A  +  
Sbjct: 57  ------ADARRVAN---KIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFI 107

Query: 106 RYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           +++   + A  I    + T H       +D+   +  +S+ D  ++   L  +    L  
Sbjct: 108 KFSSFLDKAMAIGIDYVATGHYAIIEKHNDRY--IIKKSEDDKKDQTYALYNLTQFQLER 165

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVRDI 211
             +    P  + ++  IR    +  +     +D       P N   R+ + R    VR+ 
Sbjct: 166 TLM----PCGQYKKSKIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREG 221

Query: 212 DL 213
           + 
Sbjct: 222 NF 223


>gi|325958150|ref|YP_004289616.1| exsB protein [Methanobacterium sp. AL-21]
 gi|325329582|gb|ADZ08644.1| exsB protein [Methanobacterium sp. AL-21]
          Length = 228

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS           S +     +  A++ ++  +++A+ E++    VC  L   H+
Sbjct: 9  LSGGLDSTV--------ASAKFREDYQIHALTFNYG-QKSAEMEIKSAKAVCKELGAEHT 59

Query: 86 VVS 88
          V+ 
Sbjct: 60 VIE 62


>gi|309807240|ref|ZP_07701212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166378|gb|EFO68585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 375

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKEQRYDVVGVFMKNWDDTDDSGVC-------TATEDFEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++                  R          E ++    + A  ++
Sbjct: 61  RVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D+      MR +    ++   LS +    L         P     +
Sbjct: 121 ADYIAMGHYAKTVTDENGIVHMMRPKDGNKDQTYFLSQVTQEQLKKA----IFPLADLSK 176

Query: 175 EDIRSFLLQRNIS 187
             +R    Q  ++
Sbjct: 177 PQVRMIAEQAGLA 189


>gi|307544220|ref|YP_003896699.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Halomonas elongata DSM 2581]
 gi|307216244|emb|CBV41514.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Halomonas elongata DSM 2581]
          Length = 589

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 67/188 (35%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V   H+L+ +SGG DS  +   LH  + D      + + + VD+  LR+   D+V 
Sbjct: 285 VREQVGDRHVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRKDEGDQVM 338

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG-LM-----AAAREARYALI-----SEHAKTINAT 120
                 S + +   V+     +     L       A R+           +E AK     
Sbjct: 339 --KTFSSHMGV--RVIRVDAEEQFLSRLEDVHDPEAKRKIIGNTFIDVFDAEAAKIEGVE 394

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +   + L +  P     ++++R  
Sbjct: 395 FLAQGTIYPDVIES---AAAKTGKAHVIKSHHNVGGLPETMKLQLVEPLRELFKDEVRKL 451

Query: 181 LLQRNISW 188
            ++  + +
Sbjct: 452 GVELGLPY 459


>gi|325983111|ref|YP_004295513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas sp. AL212]
 gi|325532630|gb|ADZ27351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosomonas sp. AL212]
          Length = 359

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 52/205 (25%), Gaps = 58/205 (28%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS---- 74
              ++V +SGG DS      L     D     +K               D   Y S    
Sbjct: 3   KHRVIVGMSGGVDSSVAAYVLKQQGYDVVGLFMKNW----------EDDDTDEYCSSRQD 52

Query: 75  -----DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
                 V   + I   +V++     +           A R          E ++    +H
Sbjct: 53  FIDAVSVADVIDIPIEIVNFSIEYKERVFSQFLAEYQAGRTPNPDVLCNAEIKFKAFLDH 112

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR------ 167
           A  + A  I T H              R        L G       D + ++ R      
Sbjct: 113 ANKLGADYIATGH----------YARVRKAGGVFQLLKGEDGN--KDQSYFLYRLNQAQL 160

Query: 168 -----PFLRCRREDIRSFLLQRNIS 187
                P     + ++R    +  + 
Sbjct: 161 AKSLFPIGHLYKREVRKIARELKLP 185


>gi|225012689|ref|ZP_03703124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium MS024-2A]
 gi|225003222|gb|EEG41197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Flavobacteria bacterium MS024-2A]
          Length = 394

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 49/203 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRE-----TAK 67
              I+V +SGG DS      L     +      +++     +       L          
Sbjct: 3   KGRIIVGLSGGVDSSVAAYLLKKEGYEVIGLFMKNWHDETVT-------LSNECPWLEDS 55

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALIS 111
           ++   V     +L I    V       +                       RE ++ +  
Sbjct: 56  NDAMLV---AEKLGIPFQTVDLSKEYKERIVDYMFDEYSKGRTPNPDVLCNREIKFDVFL 112

Query: 112 EHAKTINATLIMTAHTFDDQLETVY--------MRSQRDYAEKGMGLSGMCDTILYDLNL 163
           E A ++ A  + T H      +T +         + +            +C      L+ 
Sbjct: 113 EIALSLGADYVATGHY---CQKTFFATPSGDHIHQLKSGADNNKDQSYFLCQLNQKQLS- 168

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
            +  P    ++E++R   L++++
Sbjct: 169 HVLFPIGHLQKEEVRKIALEQDL 191


>gi|195155452|ref|XP_002018618.1| GL25858 [Drosophila persimilis]
 gi|198476816|ref|XP_001357491.2| GA21637 [Drosophila pseudoobscura pseudoobscura]
 gi|194114771|gb|EDW36814.1| GL25858 [Drosophila persimilis]
 gi|198137863|gb|EAL34561.2| GA21637 [Drosophila pseudoobscura pseudoobscura]
          Length = 666

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+   R+ 
Sbjct: 216 EECIRYIREKVGSNKVLLLVSGGVDSSVCAALL-----RRALYPNQIIAVHVDNGFMRKN 270

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
              E   V      + I   V  
Sbjct: 271 ---ESEKVERSLREIGIDLIVRK 290


>gi|182625513|ref|ZP_02953284.1| GMP synthase [Clostridium perfringens D str. JGS1721]
 gi|177909201|gb|EDT71666.1| GMP synthase [Clostridium perfringens D str. JGS1721]
          Length = 509

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++++V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V 
Sbjct: 208 IKNIVGDKKLICALSGGVDSSVAAVMVHKAVGK------QLTCIFVDHGLLRKDEGDQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +      + +       +        S P+T       E       E  K  +   ++ 
Sbjct: 262 KIFKEGFDMNLIRVNAQDRFLGKLKGVSDPETKRKIIGEEFIRVFEEEAGKLGDIKFLVQ 321

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
              + D +E                +         +  D+   +  P     ++++R+  
Sbjct: 322 GTIYPDVVE---------SGTDTSAVIKSHHNVGGLPEDMEFSLIEPLRELFKDEVRAVG 372

Query: 182 LQRNISW 188
            +  I  
Sbjct: 373 EELGIPH 379


>gi|289423312|ref|ZP_06425120.1| GMP synthase [Peptostreptococcus anaerobius 653-L]
 gi|289156243|gb|EFD04900.1| GMP synthase [Peptostreptococcus anaerobius 653-L]
          Length = 511

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++++V     L A+SGG DS      +H  +          + + VDH  LR+   D+V 
Sbjct: 209 IKAMVGDKKALCALSGGVDSSVAAALMHKAIGK------NLTCVFVDHGLLRKNEGDDVE 262


>gi|255017709|ref|ZP_05289835.1| GMP synthase [Listeria monocytogenes FSL F2-515]
          Length = 267

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ +V    +L+A+SGG DS  + + +H  + D      + + I VDH L
Sbjct: 217 IQEIVGDKKVLLALSGGVDSSVVGVLIHKAIGD------QLTCIFVDHGL 260


>gi|134045948|ref|YP_001097434.1| putative ATP binding-like protein [Methanococcus maripaludis C5]
 gi|132663573|gb|ABO35219.1| putative ATP binding related protein [Methanococcus maripaludis C5]
          Length = 291

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSDVCSRLR 81
           ++  SGG DS+  L  L   L  R         ++VD        +E      ++     
Sbjct: 70  ILGFSGGKDSVVALYLLVKELRIRPL------CVTVD---NGYLAEEALTNCKNIAKYFG 120

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   V++   +K                 +     I + A+  N   I+T H
Sbjct: 121 VDWLVINKDFTKFFKETISKGESPCRVCSDMNMHEIWQFARQTNIDTIVTGH 172


>gi|170723354|ref|YP_001751042.1| GMP synthase [Pseudomonas putida W619]
 gi|226739707|sp|B1JDH6|GUAA_PSEPW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|169761357|gb|ACA74673.1| GMP synthase, large subunit [Pseudomonas putida W619]
          Length = 525

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 29/190 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           VR  V  A++L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 221 VRQQVGSANVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLHEG-DQV 273

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAA----------REARYALISEHAKTIN 118
           +    +    + +   V+     K     L   A          R       +E +K  N
Sbjct: 274 MAMFKE---NMGVK--VIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDVFDAEASKLDN 328

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E+      +      +        +  ++NL +  P     ++++R
Sbjct: 329 IQFLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVR 385

Query: 179 SFLLQRNISW 188
              L+  + +
Sbjct: 386 KIGLELGLPY 395


>gi|156741610|ref|YP_001431739.1| PP-loop domain-containing protein [Roseiflexus castenholzii DSM
           13941]
 gi|156232938|gb|ABU57721.1| PP-loop domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 278

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 47/185 (25%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVCS 78
           L+A SGG DS  LL   H  L +R+       A +        +    ++E+     + +
Sbjct: 23  LIAFSGGVDSTLLLKVAHDTLGERAI------AAT------ADSETYPREELEQARALAT 70

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAR----EARYAL------ISEHAKTINATLIMTAHTF 128
            +   H VV       +      AR       Y        +   A  +    I+     
Sbjct: 71  LIGCRHIVVCTN----ELSDEHYARNQPDRCYYCKRTLFTELQPLAAELGVAAILYGAMA 126

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
           DD                G    G    + + +   +        +++IR    +  +  
Sbjct: 127 DD---------------IGTHRPGHRAAMEFAVRSPLIE--AGLGKQEIRELARRLGLPN 169

Query: 189 CEDPS 193
              PS
Sbjct: 170 WNKPS 174


>gi|15614807|ref|NP_243110.1| aluminum resistance protein [Bacillus halodurans C-125]
 gi|81786626|sp|Q9KAP3|QUEC_BACHD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|10174863|dbj|BAB05963.1| aluminum resistance protein [Bacillus halodurans C-125]
          Length = 223

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  AL +          + + ++ D+  R    +E+    ++  +L
Sbjct: 9  VVV-FSGGQDSTTCLFWALKTFD--------EVATVTFDYGQRH--AEEIECAKEIAEQL 57

Query: 81 RIAHSVVS 88
           ++  V+ 
Sbjct: 58 GVSFRVLD 65


>gi|320546686|ref|ZP_08040998.1| GMP synthase [Streptococcus equinus ATCC 9812]
 gi|320448741|gb|EFW89472.1| GMP synthase [Streptococcus equinus ATCC 9812]
          Length = 520

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH L
Sbjct: 219 IRQKVGDRKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGL 262


>gi|171779380|ref|ZP_02920344.1| hypothetical protein STRINF_01225 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281997|gb|EDT47428.1| hypothetical protein STRINF_01225 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 520

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH L
Sbjct: 219 IRQKVGDRKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGL 262


>gi|326803273|ref|YP_004321091.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651304|gb|AEA01487.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 516

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V
Sbjct: 215 IRDRVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKGEADQV 267


>gi|291562696|emb|CBL41512.1| argininosuccinate synthase [butyrate-producing bacterium SS3/4]
          Length = 405

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 48/205 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---DEVRYVS- 74
              +++A SGG D+  L      +   +         + +D           +  +Y   
Sbjct: 2   KEKVILAYSGGLDTTVL------IPWLKENYDYDVVCVCIDVGQGNELDGLEERAKYCGA 55

Query: 75  ----------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                     + C          +           A AR     ++ + AK   A  I  
Sbjct: 56  FKLYIEHVVDEFCDEYIAPCVKANATYENKYLLGTAMARPLIAKILVDIAKKEGAVAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC---RREDIRS 179
             T   +DQ+               +G+  +        ++ I  P+       RE+   
Sbjct: 116 GATGKGNDQV------------RFELGIKALAP------DMKIIAPWRTWNIQSREEELE 157

Query: 180 FLLQRNISWCED-PSNTDDRFERVR 203
           +  + NI    D P   +D + R R
Sbjct: 158 YCAKHNI----DLPFKKNDSYSRDR 178


>gi|262306069|gb|ACY45627.1| gln amidotransferase [Leiobunum verrucosum]
          Length = 196

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++S V    +L+ VSGG DS      LH  L +      +  A+ +D+   R+    E 
Sbjct: 36  YIQSSVGDNKVLMLVSGGVDSTVCAALLHKALKED-----QVIALHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V     R+ +   VV+
Sbjct: 88  LQVEQSLKRIGLKLKVVN 105


>gi|194221748|ref|XP_001488278.2| PREDICTED: similar to GMPS protein [Equus caballus]
          Length = 1032

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 569 IRERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 620

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 621 SVEEALKKLGIQVKVINAAHS 641


>gi|317496474|ref|ZP_07954824.1| GMP synthase domain-containing protein [Gemella moribillum M424]
 gi|316913405|gb|EFV34901.1| GMP synthase domain-containing protein [Gemella moribillum M424]
          Length = 514

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 30/191 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  +   L   + +      +   + +DH  LR+    E  
Sbjct: 209 IREEVGDQKVLCALSGGVDSSVVAALLDKAIGN------QLICMFIDHGLLRKG---EAE 259

Query: 72  YV-----SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTI 117
            V      ++     +    V  K          S P+        E  Y    E AK  
Sbjct: 260 AVMSTFSKEIDGGFNMNLIKVDAKERFLGKLKGVSDPEKKRKIIGNEFVYVFDEECAKLH 319

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +   +     + D +E            + +        +  D+   +  P     ++++
Sbjct: 320 DVPFLAQGTLYTDVIE------SGTKNAQTIKSHHNVGGLPEDMRFSLIEPLNTLFKDEV 373

Query: 178 RSFLLQRNISW 188
           R+      +  
Sbjct: 374 RALGEALGLPH 384


>gi|307701980|ref|ZP_07638988.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus mitis NCTC
           12261]
 gi|307616625|gb|EFN95814.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus mitis NCTC
           12261]
          Length = 520

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + +      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGN------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  D+   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|282881825|ref|ZP_06290478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus lacrimalis 315-B]
 gi|281298317|gb|EFA90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus lacrimalis 315-B]
          Length = 351

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 39/195 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               +++ +SGG DS    I L +   D      R++        + D+           
Sbjct: 2   KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWADDGVCTATEDYMD--------- 52

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEHAK 115
            V  V S+L I +  V+++                  R          E ++     +A 
Sbjct: 53  -VVKVASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYAL 111

Query: 116 TINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +   I   H   T +   +T   R   +  ++   LS + +  L         P    
Sbjct: 112 NFDCDYIAMGHYARTKNIDGKTYLCRGLDNNKDQSYFLSRVTEDALKKT----LFPIGEL 167

Query: 173 RREDIRSFLLQRNIS 187
           +++ +R       +S
Sbjct: 168 QKDQVRKIAKDYGLS 182


>gi|260598891|ref|YP_003211462.1| GMP synthase [Cronobacter turicensis z3032]
 gi|260218068|emb|CBA32807.1| GMP synthase [glutamine-hydrolyzing] [Cronobacter turicensis z3032]
          Length = 525

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  + DR       + + VD+  LR     E  
Sbjct: 221 IRQQVGNDRVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLLRLN---EAE 271

Query: 72  YVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V D       +    V  +           +P+       R        E  K  +   
Sbjct: 272 QVMDMFGDHFGLNIVHVPAEARFLDALAGIDEPEAKRKTIGRVFVEVFDEEALKLEDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|281411874|ref|YP_003345953.1| NAD+ synthetase [Thermotoga naphthophila RKU-10]
 gi|281372977|gb|ADA66539.1| NAD+ synthetase [Thermotoga naphthophila RKU-10]
          Length = 290

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 1  MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVD 59
          M  S I  +R  +    Y   + V VSGG DS  +L     ++  DR FG I        
Sbjct: 10 MKESLISFIREKIEEYNYKGAV-VGVSGGIDSAVVLSLCVQALGKDRVFGLILPE----- 63

Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL 98
             R+++KD V+   ++C  L + + + S      + G+
Sbjct: 64 ---RDSSKDSVKDAVELCESLNVEYKIKSITPILRKIGV 99


>gi|220916722|ref|YP_002492026.1| GMP synthase, large subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954576|gb|ACL64960.1| GMP synthase, large subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 518

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 26/195 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+    +R+ V   H++ A+SGG DS    + +H  + DR         I VD+  LR  
Sbjct: 205 EAAVEQIRAQVKDGHVICALSGGVDSAVAALLVHRAIGDR------LRCIFVDNGVLRAG 258

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE------------- 112
            + +V  V    +   +    V                E +  +I               
Sbjct: 259 ERQQVEDV--FGAMFHLPLVTVDASRRFLGALAGVTDPERKRKIIGHEFIAVFEQEVERL 316

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A    A  ++    + D +E+V  R      +    + G+ +     +NL +  P    
Sbjct: 317 AAHGARAKFLVQGTLYPDVIESVSFRGPSATIKSHHNVGGLPEK----MNLSLVEPLREL 372

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   L+  + 
Sbjct: 373 FKDEVRQLGLELGLP 387


>gi|156932952|ref|YP_001436868.1| GMP synthase [Cronobacter sakazakii ATCC BAA-894]
 gi|226738454|sp|A7MGU1|GUAA_ENTS8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|156531206|gb|ABU76032.1| hypothetical protein ESA_00755 [Cronobacter sakazakii ATCC BAA-894]
          Length = 525

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  + DR       + + VD+  LR     E  
Sbjct: 221 IRQQVGNDRVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLLRLN---EAE 271

Query: 72  YVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V D       +    V  +           +P+       R        E  K  +   
Sbjct: 272 QVMDMFGDHFGLNIVHVPAEARFLDALAGIDEPEAKRKTIGRVFVEVFDEEALKLEDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|149064654|gb|EDM14805.1| guanine monphosphate synthetase, isoform CRA_a [Rattus norvegicus]
          Length = 529

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKEKVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|148269429|ref|YP_001243889.1| NAD+ synthetase [Thermotoga petrophila RKU-1]
 gi|147734973|gb|ABQ46313.1| NH(3)-dependent NAD(+) synthetase [Thermotoga petrophila RKU-1]
          Length = 281

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 1  MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVD 59
          M  S I  +R  +    Y   + V VSGG DS  +L     ++  DR FG I        
Sbjct: 1  MKESLISFIREKIEEYNYKGAV-VGVSGGIDSAVVLSLCVQALGKDRVFGLILPE----- 54

Query: 60 HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL 98
             R+++KD V+   ++C  L + + + S      + G+
Sbjct: 55 ---RDSSKDSVKDAVELCESLNVEYKIKSITPILRKIGV 90


>gi|124486431|ref|YP_001031047.1| hypothetical protein Mlab_1618 [Methanocorpusculum labreanum Z]
 gi|189038924|sp|A2STX4|QUEC_METLZ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|124363972|gb|ABN07780.1| exsB protein [Methanocorpusculum labreanum Z]
          Length = 222

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 8/57 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +SGG DS  L      +            A+ V++  R   + E+     V   L +
Sbjct: 8  LSGGMDSTTLAFVAKKM-------GYDILALHVNYGQRTE-RKELEAAKKVADVLGV 56


>gi|74144707|dbj|BAE27334.1| unnamed protein product [Mus musculus]
          Length = 693

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKEKVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|51873878|gb|AAH80685.1| Gmps protein [Mus musculus]
          Length = 477

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
          ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 14 IKEKVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 65

Query: 72 YVSDVCSRLRIAHSVVSWKNS 92
           V +   +L I   V++  +S
Sbjct: 66 SVEEALKKLGIQVKVINAAHS 86


>gi|85861218|ref|NP_001028472.2| GMP synthase [glutamine-hydrolyzing] [Mus musculus]
 gi|145558920|sp|Q3THK7|GUAA_MOUSE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|74139380|dbj|BAE40832.1| unnamed protein product [Mus musculus]
 gi|74146610|dbj|BAE41314.1| unnamed protein product [Mus musculus]
 gi|74226222|dbj|BAE25299.1| unnamed protein product [Mus musculus]
 gi|148703454|gb|EDL35401.1| mCG6377, isoform CRA_a [Mus musculus]
 gi|187952891|gb|AAI38412.1| Guanine monphosphate synthetase [Mus musculus]
 gi|187953909|gb|AAI38413.1| Guanine monphosphate synthetase [Mus musculus]
          Length = 693

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKEKVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|67078508|ref|NP_001019925.1| GMP synthase [glutamine-hydrolyzing] [Rattus norvegicus]
 gi|81908630|sp|Q4V7C6|GUAA_RAT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|66910916|gb|AAH98016.1| Guanine monphosphate synthetase [Rattus norvegicus]
          Length = 693

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKEKVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|74212049|dbj|BAE40189.1| unnamed protein product [Mus musculus]
          Length = 693

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKEKVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|74193453|dbj|BAE20667.1| unnamed protein product [Mus musculus]
          Length = 682

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 219 IKEKVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 270

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 271 SVEEALKKLGIQVKVINAAHS 291


>gi|329116978|ref|ZP_08245695.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus parauberis NCFD 2020]
 gi|326907383|gb|EGE54297.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus parauberis NCFD 2020]
          Length = 520

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRKQVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
               +  +  +    V  KN           P+        E  Y    E +K      +
Sbjct: 273 --GMLGGKFGLNIIRVDAKNRFLDLLAGVDDPEKKRKIIGNEFVYVFDDEASKLKGVDFL 330

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R+  +
Sbjct: 331 AQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRALGI 384

Query: 183 QRN----ISWC 189
                  I W 
Sbjct: 385 ALGMPEHIVWR 395


>gi|325919552|ref|ZP_08181566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas gardneri ATCC 19865]
 gi|325549961|gb|EGD20801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas gardneri ATCC 19865]
          Length = 378

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 53/199 (26%), Gaps = 51/199 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            I+V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RIIVGVSGGVDSSVAAWRLAQQGESIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L I           W           AA           RE ++    + 
Sbjct: 52  RRDAVAVCGVLGIPFHFRDFSNEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H         +     +R      ++   L  +  T L         P
Sbjct: 112 AQALGAERIATGHYARVAHSGGR--WRLLRGADRGKDQSYFLHQLGQTQLAAT----LFP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +  +R      N+ 
Sbjct: 166 IGDLEKSTLRRIAQDANLP 184


>gi|302382556|ref|YP_003818379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302193184|gb|ADL00756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 407

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 26/133 (19%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRET----AKDE 69
           L   + ++ A+SGG DS  +   LH    D     ++      DH   L++     A  +
Sbjct: 36  LPVGSRVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLY----DHGAALKKKGACCAGQD 91

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEH 113
           +         L I H V+ +++      +   A                   ++  + + 
Sbjct: 92  IHDARLAAEMLGIPHYVLDYESRFRDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDV 151

Query: 114 AKTINATLIMTAH 126
           A+ + A  + T H
Sbjct: 152 ARDLGAAAMATGH 164


>gi|281343173|gb|EFB18757.1| hypothetical protein PANDA_015366 [Ailuropoda melanoleuca]
          Length = 784

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE +R  ++  V  + +LV +SGG DS      L+  LS       +  A+ +D+   R 
Sbjct: 315 IECIRE-IKERVGTSKVLVLLSGGVDSTVCTALLNRALSQD-----QVIAVHIDNGFMR- 367

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
             K E + V +   +L I   V++  +S
Sbjct: 368 --KRESQSVEEALKKLGIQVKVINAAHS 393


>gi|301091051|ref|XP_002895718.1| GMP synthase [glutamine-hydrolyzing], putative [Phytophthora
           infestans T30-4]
 gi|262097036|gb|EEY55088.1| GMP synthase [glutamine-hydrolyzing], putative [Phytophthora
           infestans T30-4]
          Length = 528

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 28/194 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE VR  V       H++ AVSGG DS    + L   L DR      F A+ +D+  LR 
Sbjct: 220 IEEVRETV---GPEGHVIGAVSGGVDSSVAAVLLQRALGDR------FHAVLIDNGLLR- 269

Query: 65  TAKDEVRYVSDVCS-RLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT--- 116
             KDE   V D    +L I    +     +  +        + R+    L  E  +    
Sbjct: 270 --KDEATEVVDRLQSKLGINLKCIDASDRFLAALKGVTEPESKRKTIGNLFIELFQEEAE 327

Query: 117 ---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   ++    + D +E++  +      +    + G+ +     ++L +  P     
Sbjct: 328 RIGHPVDFLLQGTLYPDVIESISYKGPSATIKTHHNVGGLPEK----MHLKLIEPLRELF 383

Query: 174 REDIRSFLLQRNIS 187
           ++++R   +   I 
Sbjct: 384 KDEVRELGMALGID 397


>gi|170016947|ref|YP_001727866.1| GMP synthase [Leuconostoc citreum KM20]
 gi|169803804|gb|ACA82422.1| GMP synthase [Leuconostoc citreum KM20]
          Length = 515

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  + +      + ++I VDH  LR+    E  
Sbjct: 214 IRETVGDKKVLLGLSGGVDSSVVGVLLHKAIGN------QLTSIFVDHGLLRKN---EAE 264

Query: 72  YV 73
            V
Sbjct: 265 QV 266


>gi|158319585|ref|YP_001512092.1| GMP synthase, large subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139784|gb|ABW18096.1| GMP synthase, large subunit [Alkaliphilus oremlandii OhILAs]
          Length = 319

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
          +R  V     + A+SGG DS    + +H  + D      + + I VDH L R+   D V 
Sbjct: 18 IREKVGNKKAICALSGGVDSTVSAVLVHKAIGD------QLTCIFVDHGLMRKNEGDWVE 71


>gi|42523689|ref|NP_969069.1| succinoglycan biosynthesis regulator [Bdellovibrio bacteriovorus
          HD100]
 gi|81617090|sp|Q6MKZ5|QUEC_BDEBA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|39575896|emb|CAE80062.1| succinoglycan biosynthesis regulator [Bdellovibrio bacteriovorus
          HD100]
          Length = 231

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +     ++V +S G DS       ++  + +   +I   A++ ++  R  AK E+   ++
Sbjct: 1  MKKNKKVVVLLSAGLDSTV-----NAYEAIKHHHEI-VLALTFNYGQRA-AKKELEASAN 53

Query: 76 VCSRLRIAHSVVS 88
          +   L I H VV 
Sbjct: 54 IAKHLGIPHKVVE 66


>gi|332214514|ref|XP_003256381.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] isoform 2 [Nomascus
           leucogenys]
          Length = 594

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 131 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 182

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 183 SVEEALKKLGIQVKVINAAHS 203


>gi|332214512|ref|XP_003256380.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] isoform 1 [Nomascus
           leucogenys]
          Length = 693

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|325103525|ref|YP_004273179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter saltans DSM 12145]
 gi|324972373|gb|ADY51357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter saltans DSM 12145]
          Length = 362

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 72/236 (30%), Gaps = 52/236 (22%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRET---- 65
           +     ILVA+SGG DS    + LH    +      +++      A        +     
Sbjct: 1   MSKHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGA------NSKETGCC 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYAL 109
           + D +     +       H ++  +N      +        A R            ++  
Sbjct: 55  SLDSINDARSLAVGYGFPHYILDIRNEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEA 114

Query: 110 ISEHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           + + A  ++   I T H  +    D    V  + + +  ++   L G+    L       
Sbjct: 115 LLKRADKLDCEFIATGHYANIRQQDNGRYVISKGRDENKDQSYVLWGVSQENLARTKF-- 172

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE---------RVRVRRFVRDID 212
             P     + +IR           ED +   + +E         R  ++  V +++
Sbjct: 173 --PLGSFTKAEIRQMAFDMGQ---EDLAKKSESYEICFVPDNDYRSFLKHRVPELE 223


>gi|312877455|ref|ZP_07737418.1| PP family ATPase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795776|gb|EFR12142.1| PP family ATPase [Caldicellulosiruptor lactoaceticus 6A]
          Length = 268

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 17/133 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E ++  ++       +LVA SGG DS  LL     VL +++ G    S       L 
Sbjct: 9   EKLEKLKRIIKGY---ESVLVAFSGGVDSTFLLKVSFDVLGEKAIGVFSSSV------LS 59

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKTI 117
              + E    + +   +     V+       +  +        Y        +    + +
Sbjct: 60  PQREKEDA--AKLAKDIGARLIVIERDVFSNEDFMKNDRLRCYYCKKDLIKRLKVLKEEL 117

Query: 118 NATLIMTAHTFDD 130
           N   I+     DD
Sbjct: 118 NLNEIVEGSNIDD 130


>gi|311269579|ref|XP_003132551.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Sus scrofa]
          Length = 330

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 87  IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 138

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 139 SVEEALKKLGIQVKVINAAHS 159


>gi|306842892|ref|ZP_07475528.1| exsB protein [Brucella sp. BO2]
 gi|306286915|gb|EFM58435.1| exsB protein [Brucella sp. BO2]
          Length = 232

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H + ++     +    +S D+  R   + E+ +      RL + H 
Sbjct: 7  CSGGLDSVSLA---HKMAAEHELTGL----LSFDYGQRH--RKELDFAQACAKRLGVPHQ 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDIR 62


>gi|296227744|ref|XP_002759511.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] [Callithrix
           jacchus]
          Length = 693

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|291613422|ref|YP_003523579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583534|gb|ADE11192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sideroxydans lithotrophicus ES-1]
          Length = 361

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 54/202 (26%), Gaps = 58/202 (28%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS------- 74
           ++V +SGG DS    + L     +     +K               D+  Y S       
Sbjct: 9   VVVGMSGGVDSSVTALLLKEQGYEVIGLFMKNW----------EDDDDSEYCSSRQDLID 58

Query: 75  --DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
              V   + I    V++                 A R          E ++    +HA  
Sbjct: 59  AVSVADTIGIPIEAVNFAKEYKDRVFNYFLREYEAGRTPNPDILCNSEIKFKAFLDHAIR 118

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--------- 167
           + A  I T H              +   + G       D    D + ++ R         
Sbjct: 119 LGAEKIATGHYA------------KVREQDGAFQLLKADDDSKDQSYFLHRLNQHQLSKS 166

Query: 168 --PFLRCRREDIRSFLLQRNIS 187
             P     +  +R    Q N+S
Sbjct: 167 MFPLGDIPKSKVREIARQHNLS 188


>gi|109048628|ref|XP_001105046.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] isoform 1 [Macaca
           mulatta]
 gi|297286583|ref|XP_002803006.1| PREDICTED: GMP synthase [glutamine-hydrolyzing] isoform 2 [Macaca
           mulatta]
          Length = 693

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 230 IKERVGTSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|322491706|emb|CBZ26978.1| putative GMP synthase [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 656

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 65/250 (26%), Gaps = 63/250 (25%)

Query: 8   SVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LR 63
           ++R           +L +A SGG DS    + L   L     G  +   I +DH    L 
Sbjct: 211 ALRLIRERTSGDQKVLCLA-SGGVDSTVCAVLLLKAL-----GPERVVCIHIDHGFMRLS 264

Query: 64  ETAK-DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL------------- 109
           E+ +  E   V+       +   +V  +    Q      A+ +R A              
Sbjct: 265 ESVQVLEALNVA------GVRVHLVQAQEDFAQASTEMTAKGSRAAYTTNKLSEVTDPEE 318

Query: 110 --------ISEHAK------TINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGM 153
                                ++   ++ A      D +E+    +  +        +  
Sbjct: 319 KRNIIGNTFMTVCDRVIKELQLDVENLLLAQGTLRPDLIESGSKYASANADAIKTHHNDT 378

Query: 154 CDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDL 213
               L      I  P     ++++R    +  I                  R  V     
Sbjct: 379 AVVRLLREAGRIIEPLCDYHKDEVRELGARLGIP-----------------RHLVERQPF 421

Query: 214 HALYLKMKKF 223
               L ++  
Sbjct: 422 PGPGLAIRTL 431


>gi|290475585|ref|YP_003468473.1| GMP synthetase (glutamine aminotransferase) [Xenorhabdus bovienii
           SS-2004]
 gi|289174906|emb|CBJ81707.1| GMP synthetase (glutamine aminotransferase) [Xenorhabdus bovienii
           SS-2004]
          Length = 525

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 65/217 (29%), Gaps = 65/217 (29%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS---------------- 47
           S I+ +   +R+ +   H+++A+SGG DS    + L+  +  R                 
Sbjct: 212 SIIDDIVERLRTQIGDDHVILALSGGVDSSVTALLLNRAIGKRLTCVFVDNGLLRLNEAD 271

Query: 48  ------FGKIKFSAISVDHCLRETAKDEVRYVSDV-------CSRLRIAHSVVSWKNSKP 94
                  GK   + + V        K E R++S +         R  I H  +   + + 
Sbjct: 272 QVMAMFEGKFDLNLVHV--------KAEERFLSALAGIDEPEAKRKTIGHVFIDVFDEEA 323

Query: 95  QTGLM---AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
                    A       +I   A       ++ +H                         
Sbjct: 324 SKQTQVKWLAQGTIYPDVIESAASATGNAHVIKSHH------------------------ 359

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
                +  D+ L +  P     ++++R   L+  + +
Sbjct: 360 -NVGGLPDDMKLGLVEPLKELFKDEVRRIGLELGLPY 395


>gi|86605284|ref|YP_474047.1| PP-loop family protein [Synechococcus sp. JA-3-3Ab]
 gi|86553826|gb|ABC98784.1| PP-loop family protein [Synechococcus sp. JA-3-3Ab]
          Length = 274

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 49/193 (25%), Gaps = 37/193 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET- 65
           +      + L     +LVA SGG DS    +           G +  +A           
Sbjct: 4   QKFEQLAQILAKMGRVLVAYSGGVDSS---LVAKLAWDQLGEGALAVTAA------SPAL 54

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINA 119
             +++         + I H +V  +       +          +   + L+   A+    
Sbjct: 55  LPEDLEEAIWQAQSIGIRHQIVETQELQDPRYAANPANRCYFCKSHLHDLLCRLAQAQGY 114

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDI 177
             ++     DD                   L+     +       +  P       + ++
Sbjct: 115 DYVVDGLNADD-------------------LADYRPGVQAARERGVRSPLAEVGMSKLEV 155

Query: 178 RSFLLQRNISWCE 190
           R       + W +
Sbjct: 156 RQLSRHLGLPWWD 168


>gi|78043673|ref|YP_358888.1| hypothetical protein CHY_0016 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995788|gb|ABB14687.1| conserved hypothetical protein TIGR00268 [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 267

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 43/180 (23%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----DEVRYVSDVC 77
           ++VA SGG DS  LL     VL D+       +A+ +       +     DE+    ++ 
Sbjct: 19  VVVAFSGGVDSSFLLKVARDVLGDKV-----VAAVGI-------SDTYKPDELLEAENIA 66

Query: 78  SRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAK---TINATLIMTAHTFDDQ 131
             L +         + +              +  L ++  +    +N   ++     DD 
Sbjct: 67  KMLEVKLLKVYTDEFSDPNFVNNPPDRCYYCKKNLFTKLIELKEQLNFNYVVDGANLDDN 126

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWC 189
                              +           L +  P       +E+IR F  +  +   
Sbjct: 127 -------------------NDYRPGHRAIAELGVRSPLREAGFTKEEIRRFAREMGLPNW 167


>gi|19551841|ref|NP_599843.1| GMP synthase [Corynebacterium glutamicum ATCC 13032]
 gi|62389498|ref|YP_224900.1| GMP synthase [Corynebacterium glutamicum ATCC 13032]
 gi|24211741|sp|Q8NSR1|GUAA_CORGL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21323372|dbj|BAB98000.1| GMP synthase - PP-ATPase domain [Corynebacterium glutamicum ATCC
           13032]
 gi|41324832|emb|CAF19314.1| PUTATIVE GMP SYNTHASE [Corynebacterium glutamicum ATCC 13032]
          Length = 523

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 68/200 (34%), Gaps = 31/200 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE VR     +      +  +SGG DS     A+   L  R+ G  + + + VDH L 
Sbjct: 207 ELIEKVR---EQIGEDGRAICGLSGGVDS-----AVAGALVQRAIGD-RLTCVFVDHGLL 257

Query: 63  RETAKDEVR--YVSDVCSRL-----------RIAHSVVSWKNSKPQTGLMAAAREARYAL 109
           R   +++V   +V+   ++L           ++A  V   +  +   G        R   
Sbjct: 258 RAGEREQVEKDFVAATGAKLVTVDERQAFLSKLA-GVTEPEAKRKAIGAEFIRSFERAVA 316

Query: 110 --ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             + E  +      ++    + D +E+             +        +  D+   +  
Sbjct: 317 GVLEEAPEGSTVDFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFKLVE 371

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R+   +  + 
Sbjct: 372 PLRDLFKDEVRAVGRELGLP 391


>gi|193213013|ref|YP_001998966.1| exsB protein [Chlorobaculum parvum NCIB 8327]
 gi|254764320|sp|B3QPB3|QUEC_CHLP8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|193086490|gb|ACF11766.1| exsB protein [Chlorobaculum parvum NCIB 8327]
          Length = 227

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +L+ VSGG DS+      H           + +A+ V++  R   + E+     +C    
Sbjct: 4  VLL-VSGGMDSLVATALAH-------HHGFELAAMHVNYGQRTW-QKELECFRQICDHYG 54

Query: 82 IA 83
          I 
Sbjct: 55 IE 56


>gi|187780204|ref|ZP_02996677.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC
           15579]
 gi|187773829|gb|EDU37631.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC
           15579]
          Length = 359

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 78/244 (31%), Gaps = 67/244 (27%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVD 59
           +    +LV +SGG DS      L                      ++  G    SA+   
Sbjct: 3   ILKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAV--- 59

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE 104
                    + R V++   ++ I   V+++K++  +                    A  +
Sbjct: 60  --------ADARRVAN---KIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNK 108

Query: 105 A-RYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
             +++   + A  +    + T H       +D+   +  +S+ D  ++   L  +    L
Sbjct: 109 FIKFSSFLDKAMAMGIDYVATGHYAIIEKHNDRY--IIKKSEDDKKDQTYALYNLTQFQL 166

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVR 209
               +    P  + ++  IR    +  +     +D       P N   R+ + R    VR
Sbjct: 167 ERTLM----PCGQYKKSKIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVR 222

Query: 210 DIDL 213
           + + 
Sbjct: 223 EGNF 226


>gi|111220611|ref|YP_711405.1| GMP synthase [Frankia alni ACN14a]
 gi|111148143|emb|CAJ59812.1| GMP synthetase (glutamine aminotransferase) [Frankia alni ACN14a]
          Length = 562

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 66/199 (33%), Gaps = 22/199 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++ ++     VR+ V    ++  +SGG DS      +H  + D        + + VDH 
Sbjct: 241 MVNIVDEAVAAVRAQVGSGRLICGLSGGVDSAVAAALVHRAVGD------ALTCVFVDHG 294

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALIS 111
            LR    ++V    D  +   +    V             + P+       RE    +  
Sbjct: 295 LLRAGEAEQVE--RDFVASTGVDLVHVKAADRFAAALAGVTDPEHKRKIIGREF-IRVFE 351

Query: 112 EHAKTINATLIMTAHTFDDQLE-TVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRP 168
           E A+ + A       T +  ++ T+Y       +     +        +  DL   +  P
Sbjct: 352 ESARELEARAEAEGATIEHLVQGTLYPDVIESGSPTAAKIKSHHNVGGLPEDLRFGLVEP 411

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R    +  + 
Sbjct: 412 LRTLFKDEVRRLGEELGLP 430


>gi|91205346|ref|YP_537701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia bellii RML369-C]
 gi|157826947|ref|YP_001496011.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia bellii OSU 85-389]
 gi|122425762|sp|Q1RJ52|MNMA_RICBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235077|sp|A8GVU7|MNMA_RICB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91068890|gb|ABE04612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia bellii RML369-C]
 gi|157802251|gb|ABV78974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rickettsia bellii OSU 85-389]
          Length = 367

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 76/213 (35%), Gaps = 49/213 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD----------E 69
           + ++VA+SGG DS  +   L     +     ++      DH +  TAK           +
Sbjct: 9   STLVVAMSGGVDSSVVAGILCEQGYNVIGITLQLY----DHGM-ATAKKNACCAGQDIYD 63

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEH 113
            + V++   +L + H V+ +++   ++ +                    +  ++  + + 
Sbjct: 64  AKMVAN---KLGMPHYVLDYESKFKESVIDNFVDSYLRGETPLPCVQCNKSVKFRDLIKT 120

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEK-GMGLSGMCDTILY------DLNLWIS 166
           AK + A  ++T H           +   D   +  MGL  + D   +      +   ++ 
Sbjct: 121 AKELGADKLVTGH--------YVRKINGDNGPELHMGLDPLKDQSYFLFATTKEQLEYLD 172

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
            P     +++ R    +  +   + P + D  F
Sbjct: 173 FPLGALTKDETRKLASKFGLEVADKPDSQDICF 205


>gi|1143535|emb|CAA90569.1| ExsB [Sinorhizobium meliloti]
 gi|2808500|emb|CAA12530.1| ExsB protein [Sinorhizobium meliloti]
          Length = 234

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I++  SGG DS+ L    H V +++    +    +S D+  R   + E+ + +    RL 
Sbjct: 4  IVI-CSGGLDSVSLA---HKVAAEQELSGL----LSFDYGQRH--RKELDFAAACARRLG 53

Query: 82 IAHSVVSWKNSKPQ 95
          + H ++  +    +
Sbjct: 54 VPHQIIDIREIGRR 67


>gi|288927700|ref|ZP_06421547.1| GMP synthase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330534|gb|EFC69118.1| GMP synthase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 514

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +++ +    +++ +SGG DS      L+  + D      K + I VDH  L
Sbjct: 198 SFVESTVNELKAQLGDDRVILGLSGGVDSSVCAALLNRAIGD------KLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|260911659|ref|ZP_05918239.1| GMP synthase [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634207|gb|EEX52317.1| GMP synthase [Prevotella sp. oral taxon 472 str. F0295]
          Length = 514

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +++ +    +++ +SGG DS      L+  + D      K + I VDH  L
Sbjct: 198 SFVESTVNELKAQLGDDRVILGLSGGVDSSVCAALLNRAIGD------KLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|257054547|ref|YP_003132379.1| GMP synthase [Saccharomonospora viridis DSM 43017]
 gi|256584419|gb|ACU95552.1| GMP synthase (glutamine-hydrolyzing) [Saccharomonospora viridis DSM
           43017]
          Length = 514

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 28/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ +   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   + +V 
Sbjct: 208 IRAQIGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGERAQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINA--- 119
              D  +   +    V             + P+       RE    +  + A+ + A   
Sbjct: 262 --RDFVAATGVKLVTVDASERFLSALAGVTDPEQKRKIIGREF-IRVFEQAARDVKAAGD 318

Query: 120 -TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              ++    + D +E+             +        +  DL   +  P     ++++R
Sbjct: 319 VEFLVQGTLYPDVVES-----GGGAGTSNIKSHHNVGGLPDDLQFTLVEPLRMLFKDEVR 373

Query: 179 SFLLQRNIS 187
              L+  + 
Sbjct: 374 RVGLELGLP 382


>gi|157813138|gb|ABV81314.1| putative GMP synthetase [Mastigoproctus giganteus]
          Length = 196

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++  V  + +L+ VSGG DS      LH  L +      +  AI +D+   R+    E 
Sbjct: 36  YIKKTVGTSKVLMLVSGGVDSTVCAALLHKALKED-----QVIAIHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVSWKNS 92
             V     +L +   V++  +S
Sbjct: 88  LQVEQSLKQLGLKMKVINASHS 109


>gi|73990462|ref|XP_866454.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 7
           [Canis familiaris]
          Length = 700

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           V+  V  + +LV +SGG DS      L+  LS       +  A+ +D+   R   K E +
Sbjct: 237 VKERVGTSKVLVLLSGGVDSTVCTALLNRALSQD-----QVIAVHIDNGFMR---KRESQ 288

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 289 SVEEALKKLGIQVKVINAAHS 309


>gi|73990454|ref|XP_866405.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 3
           [Canis familiaris]
          Length = 727

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           V+  V  + +LV +SGG DS      L+  LS       +  A+ +D+   R   K E +
Sbjct: 237 VKERVGTSKVLVLLSGGVDSTVCTALLNRALSQD-----QVIAVHIDNGFMR---KRESQ 288

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 289 SVEEALKKLGIQVKVINAAHS 309


>gi|73990456|ref|XP_866417.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 4
           [Canis familiaris]
          Length = 724

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           V+  V  + +LV +SGG DS      L+  LS       +  A+ +D+   R   K E +
Sbjct: 235 VKERVGTSKVLVLLSGGVDSTVCTALLNRALSQD-----QVIAVHIDNGFMR---KRESQ 286

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 287 SVEEALKKLGIQVKVINAAHS 307


>gi|57103704|ref|XP_534316.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 1
           [Canis familiaris]
 gi|73990451|ref|XP_852817.1| PREDICTED: similar to GMP synthase [glutamine-hydrolyzing]
           (Glutamine amidotransferase) (GMP synthetase) isoform 2
           [Canis familiaris]
          Length = 698

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           V+  V  + +LV +SGG DS      L+  LS       +  A+ +D+   R   K E +
Sbjct: 235 VKERVGTSKVLVLLSGGVDSTVCTALLNRALSQD-----QVIAVHIDNGFMR---KRESQ 286

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 287 SVEEALKKLGIQVKVINAAHS 307


>gi|269468097|gb|EEZ79807.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [uncultured SUP05 cluster bacterium]
          Length = 367

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 35/131 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            I+V +SGG DS    + L     D     +K               D   +        
Sbjct: 11  KIIVGLSGGVDSSVAALLLLEQGYDVEALFMKNW----------EEDDSEEHCSAEQDLS 60

Query: 74  --SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAK 115
               V  +L I    +++                   R          + ++ +  EHA 
Sbjct: 61  DAQKVADKLSIKLHTINFSADYWDDVFDHFLKEHKKGRTPNPDVLCNQKIKFKVFLEHAI 120

Query: 116 TINATLIMTAH 126
            + A  I T H
Sbjct: 121 LLGADKIATGH 131


>gi|313125718|ref|YP_004035988.1| GMP synthase (glutamine-hydrolyzing) [Halogeometricum borinquense
           DSM 11551]
 gi|312292083|gb|ADQ66543.1| GMP synthase (glutamine-hydrolyzing) [Halogeometricum borinquense
           DSM 11551]
          Length = 305

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 20/189 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  V  A+ ++A+SGG DS       +  + D      + + + VD  L 
Sbjct: 6   SFIEEATEEIQETVGDANAIIALSGGVDSSVAAALAYRAIGD------QLTPVYVDTGLM 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTIN 118
           R+   + +R   D    LR+  +   +  +          R+             AK  +
Sbjct: 60  RKGETEGIRETFDYMESLRVVEAQDRFLGALEGVIDPEEKRKVIGEQFIREFEREAKDTD 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  ++    + D++E           +    + G+ D + ++    I  P     ++++R
Sbjct: 120 ANYLVQGTIYPDRIE------SEGNIKSHHNVGGLPDVVDFEG---IVEPVRDLYKDEVR 170

Query: 179 SFLLQRNIS 187
               +  + 
Sbjct: 171 EVARELGLE 179


>gi|255283411|ref|ZP_05347966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bryantella formatexigens DSM 14469]
 gi|255266059|gb|EET59264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bryantella formatexigens DSM 14469]
          Length = 357

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 55/213 (25%), Gaps = 70/213 (32%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------------------RSFGKIKFSAISVDH 60
              ++V +SGG DS      L     D                   + G    SA+    
Sbjct: 2   KKKVVVGMSGGVDSSVAAWLLKEQGYDVVGVTMQIWQDEEEQTQEENGGCCGLSAV---- 57

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-RE 104
                  ++ R V+     L I + V+++K    +                    A  R 
Sbjct: 58  -------EDARRVAQT---LEIPYYVMNFKAEFKEKVMDYFAQEYLCGRTPNPCIACNRY 107

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            ++  + + +  I A  I T H              R     G        T   D    
Sbjct: 108 VKWEALLQRSLAIGADYIATGH----------YARIR-QLPGGRYTICRSATAAKDQTYA 156

Query: 165 I-----------SRPFLRCRREDIRSFLLQRNI 186
           +             P     +E+IR    +  +
Sbjct: 157 LYNLTQEQLAHTLMPVGEYTKEEIRGIAEKIGL 189


>gi|317121131|ref|YP_004101134.1| GMP synthase (glutamine-hydrolyzing) [Thermaerobacter marianensis
           DSM 12885]
 gi|315591111|gb|ADU50407.1| GMP synthase (glutamine-hydrolyzing) [Thermaerobacter marianensis
           DSM 12885]
          Length = 526

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 29/201 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             +E     +R  +  A  L A+SGG DS      +H  +        +   + VD   L
Sbjct: 213 EFVERAVPALRRQLAGARALCALSGGVDSAVAAALVHRAI------GPRLICVFVDTGLL 266

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN-------------SKPQTGLMAAAREARYAL 109
           RE    EV  V  + + L +   VV  ++             +K +       R      
Sbjct: 267 REG---EVEEVRSIFTGLGMDLRVVDARDRFLAALDGLADPEAKRKAVGETFIRVFEEEA 323

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               A+      ++   T+ D +E          A   +        +  DL   +  P 
Sbjct: 324 RRLEAQVGAIPFLVQGTTYPDVIE------SGGGAAATIKSHHNVGGLPADLEFQLVEPL 377

Query: 170 LRCRREDIRSFLLQRNISWCE 190
               ++++R    +  +    
Sbjct: 378 RDLFKDEVREVGRRLGLPPAI 398


>gi|163790364|ref|ZP_02184796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carnobacterium sp. AT7]
 gi|159874435|gb|EDP68507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carnobacterium sp. AT7]
          Length = 374

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 65/199 (32%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
               ++V +SGG DS    + L         +         +F   +        A ++ 
Sbjct: 5   SKTRVVVGMSGGVDSSVTALVLKQQGYDVVGIFMKNWDDTDEFGMCT--------ATEDY 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYALISEHA 114
             V+ V +++ I +  ++++           L      R          E ++    ++A
Sbjct: 57  NDVALVANQIGIPYYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYA 116

Query: 115 KTINATLIMTAHTFDDQLE------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             + A  + T H    Q+E      T  +R   +  ++   L+ +    L         P
Sbjct: 117 IELGADYVATGHYA--QVERDENGVTHMLRGVDNNKDQTYFLNQLSQEQLAKT----LFP 170

Query: 169 FLRCRREDIRSFLLQRNIS 187
               ++ ++R    +  ++
Sbjct: 171 LGGMQKPEVRRIAEEAGLA 189


>gi|167032045|ref|YP_001667276.1| GMP synthase [Pseudomonas putida GB-1]
 gi|226739706|sp|B0KRE6|GUAA_PSEPG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|166858533|gb|ABY96940.1| GMP synthase, large subunit [Pseudomonas putida GB-1]
          Length = 525

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 29/190 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           VR+ V  A++L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 221 VRAQVGSANVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLHEG-DQV 273

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT-GLMAAA----------REARYALISEHAKTIN 118
           +    +    + +   V+     K     L   A          R       +E +K  N
Sbjct: 274 MAMFKE---NMGVK--VIRADAEKQFLDNLEGEADPEKKRKIIGRTFIDIFDAEASKLEN 328

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E+      +      +        +  ++NL +  P     ++++R
Sbjct: 329 IQFLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVR 385

Query: 179 SFLLQRNISW 188
              L+  + +
Sbjct: 386 KIGLELGLPY 395


>gi|237714361|ref|ZP_04544842.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445525|gb|EEO51316.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 353

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 55/189 (29%), Gaps = 51/189 (26%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS    + L           +                DE +   ++  R+ I 
Sbjct: 2   VGMSGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAERMGIE 49

Query: 84  HSVVSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIMTAHT 127
           H V   +    +T     +   ++ R             + +++E A  +N   + T H 
Sbjct: 50  HYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVATGH- 108

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRCRRED 176
                        R   + G       D    D + ++ R           P     +  
Sbjct: 109 -----------YSRLEEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKVK 157

Query: 177 IRSFLLQRN 185
           +R +L ++ 
Sbjct: 158 VREYLAEKG 166


>gi|189463744|ref|ZP_03012529.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM
           17393]
 gi|189438694|gb|EDV07679.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM
           17393]
          Length = 359

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 41/190 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
               +LV +SGG DS    + L           +                DE      + 
Sbjct: 4   PEKRVLVGMSGGIDSTATCLMLKE--QGYEIVGLTMWVW----------GDEPVEARQLA 51

Query: 78  SRLRIAHSVVSWKNSKPQ---TGLMAAAREAR-------------YALISEHAKTINATL 121
             + I H V   + +  +      +    + R             + +++E A  ++   
Sbjct: 52  DSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKLDCAF 111

Query: 122 IMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRRE 175
           I T H    +++   +Y+         G          L+ L   + +    P     + 
Sbjct: 112 ISTGHYSHLEEKNGNIYI-------VAGDDDKKDQSYFLWRLGQDVLKRCLFPLGTYTKL 164

Query: 176 DIRSFLLQRN 185
            +R +L ++ 
Sbjct: 165 QVRKYLREKG 174


>gi|170755439|ref|YP_001780808.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B1 str.
           Okra]
 gi|205810574|sp|B1IIY2|MNMA2_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|169120651|gb|ACA44487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum B1 str. Okra]
          Length = 356

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 67/242 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVDHC 61
              +LV +SGG DS      L                      ++  G    SA+     
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAV----- 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREA- 105
                  + R V++   ++ I   V+++K++  +                    A  +  
Sbjct: 57  ------ADARRVAN---KIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFI 107

Query: 106 RYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           +++   + A  +    + T H       +D+   +  +S+ D  ++   L  +    L  
Sbjct: 108 KFSSFLDKAMAMGIDYVATGHYAIIEKHNDRY--IIKKSEDDRKDQTYALYNLTQFQLER 165

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVRDI 211
             +    P  + ++  IR    +  +     +D       P N   R+ + R    VR+ 
Sbjct: 166 TLM----PCGQYKKSKIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREG 221

Query: 212 DL 213
           + 
Sbjct: 222 NF 223


>gi|67921332|ref|ZP_00514851.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67857449|gb|EAM52689.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 515

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  +R+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 200 ETIRE-IRAKVGDKRVLLALSGGVDSSTLAFLLHQAIGDK 238


>gi|209523582|ref|ZP_03272136.1| GMP synthase, large subunit [Arthrospira maxima CS-328]
 gi|209495987|gb|EDZ96288.1| GMP synthase, large subunit [Arthrospira maxima CS-328]
          Length = 541

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  +R+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 226 EAIRE-IRARVGDKRVLLALSGGVDSSTLAFLLHQAIGDQ 264


>gi|153826012|ref|ZP_01978679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-2]
 gi|149740232|gb|EDM54379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio cholerae MZO-2]
          Length = 372

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 58/195 (29%), Gaps = 39/195 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 12  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 63

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC ++ I    +++             A  +  R               A +    +
Sbjct: 64  AQAVCDKIGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 123

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISR---PFLR 171
            ++A  I   H       T     ++    +G+  +      LY L +  ++R   P   
Sbjct: 124 VLDADYIAMGHYV---RRTFPQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGE 180

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 181 LEKPEVRRIAEEQGL 195


>gi|124266815|ref|YP_001020819.1| GMP synthase [Methylibium petroleiphilum PM1]
 gi|226739641|sp|A2SG95|GUAA_METPP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|124259590|gb|ABM94584.1| GMP synthase (glutamine-hydrolyzing) [Methylibium petroleiphilum
           PM1]
          Length = 534

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               +      +R+ V    +++ +SGG DS      +H  + DR       + + VDH 
Sbjct: 205 MKDHVAEAVAAIRAQVGDEEVILGLSGGVDSSVAAALIHRAIGDR------LTCVFVDHG 258

Query: 62  L 62
           L
Sbjct: 259 L 259


>gi|284164051|ref|YP_003402330.1| GMP synthase, large subunit [Haloterrigena turkmenica DSM 5511]
 gi|284013706|gb|ADB59657.1| GMP synthase, large subunit [Haloterrigena turkmenica DSM 5511]
          Length = 305

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 61/171 (35%), Gaps = 22/171 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLR 81
           ++A+SGG DS       +  + DR       + + VD  L R+   D++R   D    LR
Sbjct: 25  VIALSGGVDSSVAAALAYEAIGDR------LTPVYVDTGLMRKGETDQIRETFDYMESLR 78

Query: 82  IAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           I  +   +  +      P+        +         AK  +A  ++    + D++E   
Sbjct: 79  IVDAKDRFLEALAGVTDPEEKREIIGEQFIRE-FEREAKDADADYLVQGTIYPDRIE--- 134

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                   +    + G+ + + ++    I  P     ++++R       + 
Sbjct: 135 ---SEGGIKSHHNVGGLPEVVDFEG---IVEPVRDLYKDEVREVARHLGLD 179


>gi|222110464|ref|YP_002552728.1| gmp synthase [Acidovorax ebreus TPSY]
 gi|221729908|gb|ACM32728.1| GMP synthase, large subunit [Acidovorax ebreus TPSY]
          Length = 538

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 209 MRDHIEEAVQKIREQVGGEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 262

Query: 62  L 62
           L
Sbjct: 263 L 263


>gi|89054998|ref|YP_510449.1| tRNA-specific 2-thiouridylase MnmA [Jannaschia sp. CCS1]
 gi|122498420|sp|Q28PD8|MNMA_JANSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|88864547|gb|ABD55424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Jannaschia sp. CCS1]
          Length = 380

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 54/222 (24%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PADTRVVVAMSGGVDSSAVAAQLADEGYDVVGVTLQLY----DHG--AALAKKGACCAGR 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++   + V   +   H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDAARVAETMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
            AK ++A  + T H             QR    +   L    D    D + ++       
Sbjct: 132 TAKDLDADCMATGH-----------YIQRKMGREKAELHSAAD-AARDQSYFLFSTKQEQ 179

Query: 168 ------PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 P      + + R+   +  +S  + P + D  F   
Sbjct: 180 LDFLRFPLGHLESKAETRALAAKYGLSVADKPDSQDICFVPN 221


>gi|26553576|ref|NP_757510.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycoplasma penetrans HF-2]
 gi|44887963|sp|Q8EWS9|GUAA_MYCPE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|26453582|dbj|BAC43914.1| GMP synthase [Mycoplasma penetrans HF-2]
          Length = 511

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           L  IE +    +S+V   ++L A+SGG DS+   +     + D      K   + VDH  
Sbjct: 201 LEKIEEI----KSIVKDDYVLCAISGGVDSLVAAVLTAQAIGD------KLYCVFVDHGL 250

Query: 62  LRETAKDEV 70
           LR+    EV
Sbjct: 251 LRKNESQEV 259


>gi|312793382|ref|YP_004026305.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180522|gb|ADQ40692.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 276

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 67/199 (33%), Gaps = 46/199 (23%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
              E ++ +++SL     + VA SGG DS  L+   + VL DR        A++      
Sbjct: 11  EKYEKLKNYIKSL---GSLAVAYSGGVDSTFLVKVAYDVLGDR------VIAVT------ 55

Query: 64  ETAK--------DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL--MAAAREARYALISEH 113
            T+         D + ++  + ++  I  S         +  +      ++  +  I + 
Sbjct: 56  ATSSTYPKRELNDAITFIKQIGAKHIIIESEELEIEGFNKNPVDRCYYCKKELFEKIWKV 115

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           AK      +     FDD      +   R       G+   C+       L +  P     
Sbjct: 116 AKAHGIEYVADGSNFDD------LNDFRP------GMKAACE-------LNVVSPLKVAG 156

Query: 172 CRREDIRSFLLQRNISWCE 190
             +EDIR    +  +   +
Sbjct: 157 LTKEDIRKLSKELGLPTWD 175


>gi|299749176|ref|XP_001838564.2| GMP synthase [Coprinopsis cinerea okayama7#130]
 gi|298408318|gb|EAU83257.2| GMP synthase [Coprinopsis cinerea okayama7#130]
          Length = 538

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 11/73 (15%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDV 76
               ++ AVSGG DS      +H  + DR      F AI VD+  LR   KDE + V ++
Sbjct: 225 PKGRVIGAVSGGVDSTVAAKLMHEAIGDR------FHAIMVDNGVLR---KDEAKQVYEM 275

Query: 77  CSR-LRIAHSVVS 88
            +R L +  +VV 
Sbjct: 276 LNRDLGVNLTVVD 288


>gi|294650884|ref|ZP_06728231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter haemolyticus ATCC 19194]
 gi|292823302|gb|EFF82158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 377

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 56/197 (28%), Gaps = 40/197 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTALEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V  ++ I     ++                AA R          E ++    +HA T+
Sbjct: 56  QAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTL 115

Query: 118 NATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H         + + ET      R           +      ++N  +  P  
Sbjct: 116 GADFIATGHYARRGASMQNSRGETYA-PLLRGVDNNKDQTYFLHAVHGREINKTLF-PVG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              +  +R    + +++
Sbjct: 174 EIEKPQVRKIAEELDLA 190


>gi|256810256|ref|YP_003127625.1| GMP synthase, large subunit [Methanocaldococcus fervens AG86]
 gi|256793456|gb|ACV24125.1| GMP synthase, large subunit [Methanocaldococcus fervens AG86]
          Length = 321

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 30/198 (15%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     IE     ++  +     ++A+SGG DS    +  H  + +      K +A+ V
Sbjct: 12  MFNPQKFIEEAVEEIKQQIGDRKAIIALSGGVDSSVAAVLTHKAIGN------KLTAVFV 65

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAR---EARYAL 109
           D  L R+  ++EV         L +   VV  K+      K         +   +    +
Sbjct: 66  DTGLMRKGEREEVE--KTFRDNLGLNLIVVDAKDRFLEALKGVKDPEEKRKIIGKLFIDV 123

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E A+ I A +++      D +ET           +G   S     + + + L +  P 
Sbjct: 124 FEEIAEEIKAEVLVQGTIAPDWIET-----------QGKIKSHHNVALPHGMVLEVVEPL 172

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 173 RELYKDEVRLLAKELGLP 190


>gi|145294778|ref|YP_001137599.1| GMP synthase [Corynebacterium glutamicum R]
 gi|226738428|sp|A4QBV0|GUAA_CORGB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|140844698|dbj|BAF53697.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 523

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 68/200 (34%), Gaps = 31/200 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE VR     +      +  +SGG DS     A+   L  R+ G  + + + VDH L 
Sbjct: 207 ELIEKVR---EQIGEDGRAICGLSGGVDS-----AVAGALVQRAIGD-RLTCVFVDHGLL 257

Query: 63  RETAKDEVR--YVSDVCSRL-----------RIAHSVVSWKNSKPQTGLMAAAREARYAL 109
           R   +++V   +V+   ++L           ++A  V   +  +   G        R   
Sbjct: 258 RAGEREQVEKDFVAATGAKLVTVDERQAFLSKLA-GVTEPEAKRKAIGAEFIRSFERAVA 316

Query: 110 --ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             + E  +      ++    + D +E+             +        +  D+   +  
Sbjct: 317 GVLEEAPEGSTVDFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFKLVE 371

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R+   +  + 
Sbjct: 372 PLRDLFKDEVRAVGRELGLP 391


>gi|295102218|emb|CBK99763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii L2-6]
          Length = 370

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 70/189 (37%), Gaps = 32/189 (16%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVD-HCLR-ETAKDEVRYVSDVC 77
           L+A+SGG DS      +     D +   ++ +   A  V+   L    ++ ++   ++V 
Sbjct: 14  LIAMSGGVDSSVAAWLMQRDGFDCTGVTMRLTRNEA--VNTEGLHTCCSERDIEDAAEVA 71

Query: 78  SRLRIAHSVVSWKNSKPQTGL-------MAAA---------REARYALISEHAKTINATL 121
             + I + V+ +     +  +        A           R  ++  +   A+      
Sbjct: 72  YAMDIPYEVLDFTADFQERIIDKFIRVYEAGGTPNPCIDCNRYMKFDHLLRWAEAHGLDH 131

Query: 122 IMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRPFLRCRRED 176
           ++T H    +Q E     + R   +KG+  +     +LY+L       +  P     + +
Sbjct: 132 VVTGHYARVEQDE----ATGRWLLKKGLDENKDQSYVLYNLTQEQLAHVRLPLGGLHKSE 187

Query: 177 IRSFLLQRN 185
           +R+   Q++
Sbjct: 188 VRAIAEQQH 196


>gi|227874307|ref|ZP_03992494.1| argininosuccinate synthase [Oribacterium sinus F0268]
 gi|227839858|gb|EEJ50301.1| argininosuccinate synthase [Oribacterium sinus F0268]
          Length = 414

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 34/186 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----------AK 67
               I++A SGG D+         +   +     K   + VD    E           + 
Sbjct: 11  KGEKIILAYSGGLDTTA------IIPWLKENFGYKVVCVCVDVGQEEELSDLPERAKLSG 64

Query: 68  DE---VRYVS-DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            E   + ++  + C    +     +           + AR A    + E AK   A+ I 
Sbjct: 65  AEKLYIEHIQDEFCEEYVLPCIQANACYENKYLLGTSMARPAIAKRLVEIAKKEGASAIC 124

Query: 124 TAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
              T   +DQ+               +G+  +   +       ++  +    RED  ++ 
Sbjct: 125 HGATGKGNDQI------------RFELGIKALAPELHILAPWRMTELWTFQSREDEMAYC 172

Query: 182 LQRNIS 187
            ++ I 
Sbjct: 173 KEKGID 178


>gi|218665557|ref|YP_002425737.1| hypothetical protein AFE_1301 [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|218517770|gb|ACK78356.1| hypothetical protein AFE_1301 [Acidithiobacillus ferrooxidans
          ATCC 23270]
          Length = 339

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 14/78 (17%)

Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----DE- 69
           L    HILVA SGG DSM  L+ L  +   R   ++        H + + A     D  
Sbjct: 23 DLDSYDHILVAFSGGKDSMACLLHLLELGVSRKRLELW------HHRI-DGADGALMDWP 75

Query: 70 --VRYVSDVCSRLRIAHS 85
              Y S + +   +   
Sbjct: 76 VTEDYCSTIAAHFCLPIF 93


>gi|315230856|ref|YP_004071292.1| ATPase [Thermococcus barophilus MP]
 gi|315183884|gb|ADT84069.1| ATPase [Thermococcus barophilus MP]
          Length = 201

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 63/213 (29%), Gaps = 36/213 (16%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS      L  +  +     I F  +           +  +Y  +   RL   H 
Sbjct: 7   YSGGKDSSLAAWILQKLGYEVKLVTISFGLL----------DNW-KYAKETADRLGFNHE 55

Query: 86  VVSWKNSKPQTGLMAAARE---------ARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           VV       +       R+              + E A   +   I      DD++   +
Sbjct: 56  VVVLGREILEEAAEMCIRDGHPSNAIQFIHEKALEEIASRKDVERISDGTRRDDRV--PF 113

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-ISWCEDPSNT 195
           +  +R              ++    N+   RP L    + IR    +   I   E     
Sbjct: 114 LDLRR------------TRSLEDRFNVQYIRPLLGLGYKTIRELAEKLFIIEIRESEKLE 161

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
              +E V +R  +R   +  L +  K+    RV
Sbjct: 162 KSDYE-VELRHLLRLRGIDPLTIFPKRHYQSRV 193


>gi|302875784|ref|YP_003844417.1| GMP synthase, large subunit [Clostridium cellulovorans 743B]
 gi|307689219|ref|ZP_07631665.1| GMP synthase [Clostridium cellulovorans 743B]
 gi|302578641|gb|ADL52653.1| GMP synthase, large subunit [Clostridium cellulovorans 743B]
          Length = 510

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 26/183 (14%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSD 75
           V    +L A+SGG DS    + +H  +          + + VDH  LR   KDE   V  
Sbjct: 213 VGDKKVLCALSGGVDSSVAAVLVHKAIGK------NLTCVFVDHGLLR---KDEGDQVEQ 263

Query: 76  VCS-RLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLIMTA 125
           +   +  +    V+ +          S P+        E       E  K      ++  
Sbjct: 264 IFRGQFDMNLIRVNAQERFLGKLAGVSDPEAKRKIIGEEFIRVFEEEANKLGEIDFLVQG 323

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E              +        +  D+   +  P     ++++R+   +  
Sbjct: 324 TIYPDIVE------SGTATSATIKSHHNVGGLPEDMEFELIEPLRELFKDEVRAVGEEVG 377

Query: 186 ISW 188
           I  
Sbjct: 378 IPH 380


>gi|150402404|ref|YP_001329698.1| PP-loop domain-containing protein [Methanococcus maripaludis C7]
 gi|150033434|gb|ABR65547.1| PP-loop domain protein [Methanococcus maripaludis C7]
          Length = 296

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 21/139 (15%)

Query: 1   MFLSPI--ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AIS 57
           M L+ +  + +  F    +    I+V +SGG DS   L     +        +     + 
Sbjct: 18  MHLNQLKDDILNNFEELNLKDEKIVVMLSGGKDSAVALAIAKDL-------GLNVHLCVH 70

Query: 58  VDHCLR-ETAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYAL 109
             H    + + +E      +  R  +          +           +    +    A 
Sbjct: 71  FVHKWSWDISTNEA---KKLADRFNVPIIFPDITEELAKKTQGAKGKSICRICKTIMKAR 127

Query: 110 ISEHAKTINATLIMTAHTF 128
           + + AK  NA +IMT  T 
Sbjct: 128 MIDIAKEENAKIIMTGETA 146


>gi|221134862|ref|ZP_03561165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Glaciecola sp. HTCC2999]
          Length = 372

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 36/137 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETA 66
           +     ++V +SGG DS      L           + +       ++ A          A
Sbjct: 8   IPADTKVIVGMSGGVDSSVSAYLLKQQGFQVEGVFMKNWEEDDNDEYCA----------A 57

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YAL 109
            +++     V  +L I    +++             A  +  R               A 
Sbjct: 58  AEDLADAHAVADKLGITLHSINFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAF 117

Query: 110 ISEHAKTINATLIMTAH 126
           +   A+ + A  I T H
Sbjct: 118 LEYAAEDLGADYIATGH 134


>gi|218439824|ref|YP_002378153.1| GMP synthase [Cyanothece sp. PCC 7424]
 gi|226738434|sp|B7K8T7|GUAA_CYAP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218172552|gb|ACK71285.1| GMP synthase, large subunit [Cyanothece sp. PCC 7424]
          Length = 542

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  +R+ +    +L+A+SGG DS  L   LH  + D+
Sbjct: 227 EAIRE-IRAKIGDKRVLLALSGGVDSSTLAFLLHRAIGDQ 265


>gi|150399298|ref|YP_001323065.1| thiamine biosynthesis protein [Methanococcus vannielii SB]
 gi|150012001|gb|ABR54453.1| thiamine biosynthesis protein [Methanococcus vannielii SB]
          Length = 299

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 60/207 (28%), Gaps = 46/207 (22%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET- 65
           E +  F  S +    I+V +SGG DS   L    S+        +        H L +  
Sbjct: 26  EIMENFQNSGLNNEKIVVMLSGGKDSAVSLAIAKSL-------GLNVHLCV--HFLHDWS 76

Query: 66  ---AKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAK 115
              + DE      +  R  +          ++          +    +    A + E AK
Sbjct: 77  WNISTDEA---KKLADRFNVKIIFPDITEELLKKTQGAKGKSICRICKTIMKARMVEIAK 133

Query: 116 TINATLIMTAHTFDDQLETVY---------------MRSQRDYAEKGMGLSGMCDTILYD 160
             NA +IMT        ET                    +R   ++      +   +   
Sbjct: 134 EENAKIIMTG-------ETALEKIAGPIFEHIRENNKNIKRKSEQELYSQMELT-KVPKR 185

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
             +   RP +R    DI +     N+ 
Sbjct: 186 YKIHFFRPLIRVGHFDIFNLQKYYNLE 212


>gi|108803659|ref|YP_643596.1| GMP synthase [Rubrobacter xylanophilus DSM 9941]
 gi|108764902|gb|ABG03784.1| GMP synthase (glutamine-hydrolyzing) [Rubrobacter xylanophilus DSM
           9941]
          Length = 506

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 71/191 (37%), Gaps = 25/191 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V   VR  V  +  + A+SGG DS    + +H  + D      K + + VDH  LR+ 
Sbjct: 200 EAVER-VREQVGASRAICALSGGVDSATAAMLVHRAIGD------KLTCVFVDHGLLRQN 252

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
             ++V  V        +    V  +          + P+        E       E  K 
Sbjct: 253 EAEQV--VEAFRREAGLPLVHVDARERFLDRLAGVTDPEAKRKIVGEEFIRVFEEEAGKI 310

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +A  ++    + D +E+    + R  +   +G  G+ +     ++L +  P     +++
Sbjct: 311 RDARFLVQGTLYSDVIESGTRDAARIKSHHNVG--GLPEV----MDLELVEPLRNLFKDE 364

Query: 177 IRSFLLQRNIS 187
           +R    +  + 
Sbjct: 365 VRVVAAELGMP 375


>gi|300294862|gb|ADJ96638.1| GMP synthetase [Curtobacterium albidum]
          Length = 521

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 218 LRQQIGDEKVLLGLSGGVDSSVVRALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINAT 120
                   + I   V+     +           P+       RE       E  K     
Sbjct: 272 --QMFAENMGI--RVIRADAEQRFLTALAGEVDPEKKRKIIGREFIEVFAEEARKLDGVK 327

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  DL   +  P     ++++R  
Sbjct: 328 FLAQGTIYPDVIES---AASKQGKAHVIKSHHNVGGLPDDLEFELVEPLRDLFKDEVRKL 384

Query: 181 LLQRNISW 188
                +  
Sbjct: 385 GTTLGLPH 392


>gi|163746922|ref|ZP_02154279.1| ExsB [Oceanibulbus indolifex HEL-45]
 gi|161380036|gb|EDQ04448.1| ExsB [Oceanibulbus indolifex HEL-45]
          Length = 233

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 36/188 (19%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS+ L         +    ++    +S D+  R   + EV +      RL +   
Sbjct: 7   CSGGLDSVSLAHI---TAVEHQLTRL----VSFDYGQRH--RKEVDFAEAAAKRLGVPFH 57

Query: 86  VVSWKNSKPQTGLMAAAREA-------------------RYALI----SEHAKTINATLI 122
           ++  +         A   +                    R A++       A       +
Sbjct: 58  LIDMRGIGAALSGSALTDDIDVPDGHYAEDTMKITVVPNRNAIMLSIGFGIAAAQGDEAV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            TA    D          R    +            Y   + +  PF+   + +I     
Sbjct: 118 ATAVHGGDH---FIYPDCRPEFTRAFDAMQQAALDGYA-QVRLHTPFVEQSKAEIVRQGA 173

Query: 183 QRNISWCE 190
           Q    + E
Sbjct: 174 QHGTPFAE 181


>gi|149011672|ref|ZP_01832868.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP19-BS75]
 gi|147764103|gb|EDK71035.1| GMP synthase, C-terminal domain [Streptococcus pneumoniae
           SP19-BS75]
          Length = 520

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 59/197 (29%), Gaps = 40/197 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+  
Sbjct: 219 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVM 272

Query: 70  -------------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
                                 +L           S P+        E  Y    E +K 
Sbjct: 273 DMLGGKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKL 324

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            +   +     + D +E            + +        +  ++   +  P     +++
Sbjct: 325 KDVKFLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEEMQFELIEPLNTLYKDE 378

Query: 177 IRSFLLQRN----ISWC 189
           +R+   +      I W 
Sbjct: 379 VRALGTELGMPDHIVWR 395


>gi|262306017|gb|ACY45601.1| gln amidotransferase [Semibalanus balanoides]
          Length = 197

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 10/116 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE-TAKDEV 70
           +R+ V    +L+ VSGG DS      LH  LS       +  A+ +D+   R+  +    
Sbjct: 37  IRTTVGTHKVLLLVSGGVDSTVCAALLHKALSQD-----QVIAVHIDNGFMRKHESLQVE 91

Query: 71  RYVSDVCSRLRI---AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           + +  +  +LR+    H+ ++   + P+TG     R+    L+           I+
Sbjct: 92  QSLRKIGLKLRVINARHNFLNGSTTVPETGANGVLRKRALGLLCRTTHPEQKRKII 147


>gi|253699425|ref|YP_003020614.1| GMP synthase [Geobacter sp. M21]
 gi|251774275|gb|ACT16856.1| GMP synthase, large subunit [Geobacter sp. M21]
          Length = 516

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 24/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE+    +R  V    +L A+SGG DS  + + +H  + D      +   + V++  L
Sbjct: 204 NFIETELASIREKVGTGKVLCALSGGVDSAVVAVLIHKAIGD------QLHCVFVNNGLL 257

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V ++ ++  +I  + V   +         S P+        E  Y    E
Sbjct: 258 RKG---EADKVVNLFTKHFKINLTHVDAADRFLGMLEGISDPEQKRKIIGNEFIYLFEEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+V  +      +    + G+ +     +NL +  P    
Sbjct: 315 AKKLGQVDYLAQGTLYPDVIESVSTKGPSAVIKSHHNVGGLPEK----MNLKLLEPVREL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 371 FKDEVRLLGKELGMP 385


>gi|160902013|ref|YP_001567594.1| phosphoadenosine phosphosulfate reductase [Petrotoga mobilis SJ95]
 gi|160359657|gb|ABX31271.1| phosphoadenosine phosphosulfate reductase [Petrotoga mobilis SJ95]
          Length = 322

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 96/297 (32%), Gaps = 53/297 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             I+S++  ++ ++   H+ +A SGG DS  + +    +     F K K + ++V  C  
Sbjct: 7   EKIDSIKKEMKEIIGNEHLYIAFSGGMDSTVVALLAKDI-----FPKSKITLVNV--CFG 59

Query: 64  ETA-KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
             +    +  V  +  +L +       +  +               ++         T I
Sbjct: 60  GYSYSKGLEAVLTLSKQLGLKLFFSRGEEEQEG-------------IMYHGPNCNQCTRI 106

Query: 123 M-TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +        +++    +             G      +D    I  P L   +E+IR  L
Sbjct: 107 VKIG-----KVKQFSYKGIVASGANLSDSWGNTGIKFFDG---IYSPILNLNKEEIREIL 158

Query: 182 LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN-NAVAMLIPK 240
              N+           +     +R             K K    + V  + ++ A +I  
Sbjct: 159 QYYNVKI--------PKIGENSIRE----------GCKYKHLLKMSVNRDYHSRADIIAN 200

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
            +   +     + ++I N+    +   L  + A+      LP  + +E +   L++ 
Sbjct: 201 EVIHDVLDFYNVQREIANVK---IIGPLSKNIALI-NVKPLPSKKILEEIKHLLQNE 253


>gi|121594885|ref|YP_986781.1| GMP synthase [Acidovorax sp. JS42]
 gi|120606965|gb|ABM42705.1| GMP synthase (glutamine-hydrolyzing) [Acidovorax sp. JS42]
          Length = 538

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 209 MRDHIEEAVQKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 262

Query: 62  L 62
           L
Sbjct: 263 L 263


>gi|45358457|ref|NP_988014.1| GMP synthase subunit B [Methanococcus maripaludis S2]
 gi|50400320|sp|Q6LYU3|GUAAB_METMP RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|44921215|emb|CAF30450.1| GMP synthase (glutamine-hydrolyzing) [Methanococcus maripaludis S2]
          Length = 310

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 32/199 (16%)

Query: 1   MFLS--PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF +   IE     +R  +     ++A+SGG DS     A+ +VL+DR+ G  K  A+ V
Sbjct: 1   MFKTEPFIEESIEEIRKQINNRKTIIALSGGVDS-----AVAAVLTDRAVGD-KLLAVYV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYA 108
           D  L R+   +E+  +     ++ +   +V  K+           P+       R     
Sbjct: 55  DTGLMRKNESEEIWKIFK--EQMGLNLKIVEAKDIFLKELEGVIDPEEKRKIIGRLF-IE 111

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +  + A+     +++      D +E+           +G   +     +   + L +  P
Sbjct: 112 VFEKVAEEQGEEVLVQGTIAPDWIES-----------EGQIKTHHNIALPGGMVLDVVEP 160

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R   +   + 
Sbjct: 161 LRELYKDEVRLLAVALGLP 179


>gi|195388470|ref|XP_002052903.1| GJ19601 [Drosophila virilis]
 gi|194149360|gb|EDW65058.1| GJ19601 [Drosophila virilis]
          Length = 684

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+   R+ 
Sbjct: 216 EECIRYIREKVGNNKVLLLVSGGVDSSVCAALL-----RRALHPSQIIAVHVDNGFMRKN 270

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
              E   V      + I   V  
Sbjct: 271 ---ESEKVERSLRDIGIDLIVRK 290


>gi|159906142|ref|YP_001549804.1| GMP synthase subunit B [Methanococcus maripaludis C6]
 gi|159887635|gb|ABX02572.1| GMP synthase, large subunit [Methanococcus maripaludis C6]
          Length = 310

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 75/199 (37%), Gaps = 32/199 (16%)

Query: 1   MFLS--PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF +   IE     +R  +     ++A+SGG DS     A+ +VL+D++ G  K  A+ V
Sbjct: 1   MFKTEPFIEESIEEIRKQINNRKTIIALSGGVDS-----AVAAVLADKAIGD-KLLAVYV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYA 108
           D  L R+   +E+  +     ++ +   +V  K+           P+       R     
Sbjct: 55  DTGLMRKNESEEIWKIFK--EQMGLNLKIVEAKDIFLKELEGVIDPEEKRKIIGRLF-IE 111

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +  + A+     +++      D +E+           +G   +     +   + L +  P
Sbjct: 112 VFEKVAEEQGEEVLVQGTIAPDWIES-----------EGQIKTHHNIALPGGMVLDVVEP 160

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R   +   + 
Sbjct: 161 LRELYKDEVRLLAVALGLP 179


>gi|86158770|ref|YP_465555.1| GMP synthase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775281|gb|ABC82118.1| GMP synthase (glutamine-hydrolyzing) [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 518

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 68/195 (34%), Gaps = 26/195 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+    +R+ V   H++ A+SGG DS    + +H  + DR         I VD+  LR  
Sbjct: 205 EAAVEQIRAQVKDGHVICALSGGVDSAVAALLVHRAIGDR------LRCIFVDNGVLRAG 258

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE------------- 112
            + +V  V    +   +    V                E +  +I               
Sbjct: 259 ERKQVEDV--FGAMFHLPLVTVDASRRFLGALAGVTDPERKRKIIGHEFIAVFEQEVERL 316

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A    A  ++    + D +E+V  R      +    + G+ +     +NL +  P    
Sbjct: 317 AAHGARARFLVQGTLYPDVIESVSFRGPSATIKSHHNVGGLPEK----MNLALVEPLREL 372

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   L+  + 
Sbjct: 373 FKDEVRELGLELGLP 387


>gi|312793831|ref|YP_004026754.1| PP-loop domain-containing protein [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180971|gb|ADQ41141.1| PP-loop domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 268

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 17/133 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E ++  ++       +LVA SGG DS  LL     VL +++ G    S       L 
Sbjct: 9   EKLEKLKRIIKGY---ESVLVAFSGGVDSTFLLKVSFDVLGEKAIGVFSSSV------LS 59

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKTI 117
              + E    + +   +     V+       +  +        Y        +    + +
Sbjct: 60  PQREKEDA--AKLAKDIGARLIVIERDVFSNEDFMKNDRLRCYYCKKDLIKRLKVLKEEL 117

Query: 118 NATLIMTAHTFDD 130
           N   I+     DD
Sbjct: 118 NLNEIVEGSNIDD 130


>gi|296134482|ref|YP_003641729.1| Queuosine synthesis-like protein [Thermincola sp. JR]
 gi|296033060|gb|ADG83828.1| Queuosine synthesis-like protein [Thermincola potens JR]
          Length = 276

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 37/180 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRLR 81
           ++A SGG DS  L    H VL  ++   +  +A+           + E+     +   L 
Sbjct: 21  VIAFSGGCDSTLLAKVAHDVLGSKA---LAVTAV------SPTYTQAEIEEAKKLADSLG 71

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL------ISEHAKTINATLIMTAHTFDDQLETV 135
           + H ++     +    +        Y        + E A++ N  +I+     DD+    
Sbjct: 72  LNHMIIYTNELENPDFVSNPPERCYYCKKELMSQLRELARSKNIEIILDGANADDR---- 127

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDPS 193
                                      L +  P   +   + +IRS   + N+     PS
Sbjct: 128 ---------------HDFRPGQKASKELGVRSPLQEVGLTKAEIRSLSRELNLPTWNKPS 172


>gi|300779755|ref|ZP_07089611.1| GMP synthase (glutamine-hydrolyzing) [Corynebacterium genitalium
           ATCC 33030]
 gi|300533865|gb|EFK54924.1| GMP synthase (glutamine-hydrolyzing) [Corynebacterium genitalium
           ATCC 33030]
          Length = 535

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 66/192 (34%), Gaps = 33/192 (17%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKD--EVR 71
            +    H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR+  ++  E  
Sbjct: 226 QIGPDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRKGEREQVETD 279

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-----REARYAL-ISEHAKTINATLIMTA 125
           +V+   +RL            + +  L   A      E R A+          A   + +
Sbjct: 280 FVAATGARL--------VTVDEREAFLCKLAGVTDPEEKRKAIGAEFIRSFERAVADVVS 331

Query: 126 HTFDDQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRRE 175
           H+   Q +       T+Y          G            +  D+   +  P     ++
Sbjct: 332 HSASGQQDVGFLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPDDVEFELVEPLRTLFKD 391

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  + 
Sbjct: 392 EVRAVGRELGLP 403


>gi|254168784|ref|ZP_04875625.1| NAD+ synthetase [Aciduliprofundum boonei T469]
 gi|197622221|gb|EDY34795.1| NAD+ synthetase [Aciduliprofundum boonei T469]
          Length = 263

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 42/196 (21%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVDHCLRET 65
           E++  F+R  V   + ++ +SGG DS  +      ++  DR  G     +++      + 
Sbjct: 12  ETIIRFIRDFVGDKNAVIGLSGGLDSSTVAFLCVKALGRDRVLGVHMPDSVT-----SKE 66

Query: 66  AKDEVRYVSDVCSRLRIAH------SVVSWKNSKPQTGLMA-----AAREARYALISEHA 114
            K++ + V+D    L I         +V   N K +           AR  R A++   A
Sbjct: 67  DKEDAKLVAD---ELGIEFRTIEIGEIVEKMNEKIKLNNEMSTANLKAR-IRMAILYGIA 122

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              N                   R     + K   L G      Y        P     +
Sbjct: 123 NDEN-------------------RLVTGTSNKSEILIGYFTK--YGDGASDFAPIGDLYK 161

Query: 175 EDIRSFLLQRNISWCE 190
             +R    +  + +  
Sbjct: 162 TQVRMLAEKLGVPFRI 177


>gi|182436538|ref|YP_001824257.1| GMP synthase [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326777161|ref|ZP_08236426.1| GMP synthase (glutamine-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465054|dbj|BAG19574.1| putative GMP synthase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326657494|gb|EGE42340.1| GMP synthase (glutamine-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 528

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 24/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E     +R  V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 211 NVVEEQIALIREQVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 264

Query: 63  RETAKDEVR--YVSDVCSRLRI---------AHSVVSWKNSKPQTGLMAAAREARYALIS 111
           R+   ++V   +V+   ++L++         A + VS    K +       R    A + 
Sbjct: 265 RKGETEQVEKDFVAATGAKLKVVDAEKRFLDALAGVSDPEQKRKIIGREFIRVFEQAQLE 324

Query: 112 EHAKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              +       +   T   D +E+             +        +  D+   +  P  
Sbjct: 325 ILQEEGPEVAFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDIEFELVEPLR 379

Query: 171 RCRREDIRSFLLQRNIS 187
           +  ++++R    +  + 
Sbjct: 380 QLFKDEVRMVGQELGLP 396


>gi|160944760|ref|ZP_02091987.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443944|gb|EDP20948.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii
           M21/2]
          Length = 367

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 59/189 (31%), Gaps = 34/189 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH----CLRET----AKDEVRYVS 74
           L+A+SGG DS      +     D +   ++ +     H             ++ ++   +
Sbjct: 13  LIAMSGGVDSSVAACLMQQAGYDCTGITMRLT-----HNETLGQSGYQTCCSEKDIEDAA 67

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTIN 118
           +V   L + + V+ +        +    R                  ++  + + A+   
Sbjct: 68  EVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDWAEEHG 127

Query: 119 ATLIMTAHTFDDQLETVYM---RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              ++T H    ++E          +   ++G   S +   +  +    I  P     + 
Sbjct: 128 MEYVVTGHYA--RVEQDAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPLGALHKT 185

Query: 176 DIRSFLLQR 184
           ++R    + 
Sbjct: 186 EVREIAQEH 194


>gi|218768524|ref|YP_002343036.1| tRNA-specific 2-thiouridylase MnmA [Neisseria meningitidis Z2491]
 gi|11277501|pir||H81798 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC
           2.1.1.61) NMA1744 [imported] - Neisseria meningitidis
           (strain Z2491 serogroup A)
 gi|121052532|emb|CAM08872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis Z2491]
          Length = 383

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 21  ANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 70

Query: 75  -------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALIS 111
                   V   + I   +V++                +A R          E ++    
Sbjct: 71  QDSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFL 130

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +   +       +     + L   I  P   
Sbjct: 131 DYAVGQGADTIATGHYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERAIF-PLGG 189

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    + N+ 
Sbjct: 190 LEKPEVRRLAAEFNLP 205


>gi|14195277|sp|Q9JTJ9|MNMA_NEIMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 367

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 54/196 (27%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 5   ANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 54

Query: 75  -------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALIS 111
                   V   + I   +V++                +A R          E ++    
Sbjct: 55  QDSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +   +       +     + L   I  P   
Sbjct: 115 DYAVGQGADTIATGHYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERAIF-PLGG 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    + N+ 
Sbjct: 174 LEKPEVRRLAAEFNLP 189


>gi|319900025|ref|YP_004159753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
 gi|319415056|gb|ADV42167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
          Length = 357

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 57/190 (30%), Gaps = 39/190 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V+   +LV +SGG DS    + L           +                DE      +
Sbjct: 3   VFEKRVLVGMSGGIDSTATCLMLK--GQGYEIVGLTMWVW----------GDEPVEAGQL 50

Query: 77  CSRLRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINAT 120
              + I H +V  + S  +  +       +  R            ++ +++E A  +   
Sbjct: 51  ADSMGIEHYIVDERESFRRIIVQNFIDEYSGGRTPNPCVMCNPLFKFRILTEWADKLCCK 110

Query: 121 LIMTAHTFDDQLETV-----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            I T H    +LE +      +    D  ++   L  +   +L         P     + 
Sbjct: 111 YIATGHYT--RLEEINHKIYIIAGDDDKKDQSYFLWRLGQDVLKRC----IFPLGTYTKI 164

Query: 176 DIRSFLLQRN 185
            +R +L    
Sbjct: 165 QVREYLRDNG 174


>gi|257458988|ref|ZP_05624107.1| GMP synthase [Campylobacter gracilis RM3268]
 gi|257443373|gb|EEV18497.1| GMP synthase [Campylobacter gracilis RM3268]
          Length = 511

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 62/185 (33%), Gaps = 23/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V  A +L AVSGG DS  +   L   +           A+ VD+  LR   +  V 
Sbjct: 209 IKERVGSAKVLCAVSGGVDSSVVAALLAHAVPQ------SLIAVFVDNGLLRTGERKAVE 262

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            +  +  +L ++  V+               P+                E AK  N   +
Sbjct: 263 EMFRL--KLGVSLDVIDASELFLSRLKGAVDPEQKRKIIGATFIEVFSKEAAKHKNVKFL 320

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+         + K +        +  D+   +  P     ++++R   L
Sbjct: 321 AQGTLYTDIIESSV-----AGSSKTIKSHHNVGGLPKDMKFELIEPLREIFKDEVRQLGL 375

Query: 183 QRNIS 187
           +  +S
Sbjct: 376 ELGLS 380


>gi|168070921|ref|XP_001786986.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660006|gb|EDQ48200.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 257

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 40/187 (21%)

Query: 27  SGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           SGG DS    + L         +         +F   +        A+D+   V  VC +
Sbjct: 2   SGGVDSSVTALLLKQQGYDVIGIFMKNWDDTDEFGNCT--------AEDDAEDVRRVCEQ 53

Query: 80  LRIAHSVVSWKNS---------------KPQTGLMAAA-REARYALISEHAKTINATLIM 123
           + I +  V+++                            RE ++      A  + A  + 
Sbjct: 54  IGIPYYTVNFEKEYYDKVFSYFLDEYKLGRTPNPDVMCNREIKFGEFLTKALNLGAQYVA 113

Query: 124 TAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T H       D + T  +R      ++   L+ +    L         P     + ++R 
Sbjct: 114 TGHYARVVEQDGVYT-LLRGVDSNKDQTYFLNALNQQQLSKAMF----PIGHLPKPEVRR 168

Query: 180 FLLQRNI 186
              +  +
Sbjct: 169 IAEEAGL 175


>gi|51891639|ref|YP_074330.1| GMP synthase [Symbiobacterium thermophilum IAM 14863]
 gi|81389576|sp|Q67S57|GUAA_SYMTH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|51855328|dbj|BAD39486.1| GMP synthetase [Symbiobacterium thermophilum IAM 14863]
          Length = 513

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L A+SGG DS    + +H  + D      + + I VDH L R+   ++V 
Sbjct: 212 IRRQVGSGRVLCALSGGVDSSVAAVLVHKAVGD------QLTCIFVDHGLMRKGEPEQV- 264

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            V        I    V             + P+        E       E  K      +
Sbjct: 265 -VRTFRDHFHIHLVHVDASERFLSKLRGVTDPEQKRKIIGNEFIRLFEDEARKLGQIDFL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +    + D +E            + +        +  D+   +  PF +  ++++R+   
Sbjct: 324 VQGTVYPDVIE------SGTETARVIKSHHNVGGLPEDMRFQLIEPFRQLFKDEVRAVGR 377

Query: 183 QRNIS 187
              + 
Sbjct: 378 ALGVP 382


>gi|121998186|ref|YP_001002973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorhodospira halophila SL1]
 gi|166234856|sp|A1WWV9|MNMA_HALHL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|121589591|gb|ABM62171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halorhodospira halophila SL1]
          Length = 383

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 62/207 (29%), Gaps = 44/207 (21%)

Query: 18  YPAHILVAVSGGSDS-MGLLIALHS------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
            P  I+V +SGG DS +  L  + +      +           +        + +A+D++
Sbjct: 4   SPKRIVVGLSGGVDSAVAALRLVRAGHEVIGLFMKNWEDDDTLT--------QCSAEDDI 55

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                V   L I    V++     +     A +E R                    +   
Sbjct: 56  AAAVAVAEHLGIPIRRVNFAAHYRREVFEHALQELRAGRTPNPDILCNRHVKFDRFLRHA 115

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +   A  + T H        D  E   +R      ++   L+G+    L  +      P
Sbjct: 116 REQFEADAVATGHYARTGRAGD-GEPALLRGIDPSKDQSYFLAGVPRQALDAVRF----P 170

Query: 169 FLRCRREDIRSFLLQRNISWCE--DPS 193
                +E +R+      +   +  D +
Sbjct: 171 LGDSTKETVRAEARSAALPNFDRPDST 197


>gi|293567955|ref|ZP_06679296.1| GMP synthase [Enterococcus faecium E1071]
 gi|291589540|gb|EFF21347.1| GMP synthase [Enterococcus faecium E1071]
          Length = 303

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 33/188 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYV-SDVC 77
             +L+ +SGG DS  + + L   + D      + ++I VDH  LR+    E   V   + 
Sbjct: 6   KKVLLGLSGGVDSSVVGVLLQKAIGD------QLTSIFVDHGLLRKG---EAEQVMESLG 56

Query: 78  SRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL---ISEHAKTINATLIMTA 125
            +  +    V  ++         S P+        E  Y      ++ A     + +   
Sbjct: 57  GKFGLNIIKVDARDRFLDKLKGVSDPEQKRKIIGNEFVYVFDDEATKLAGEEGVSFLAQG 116

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E            + +        +  D+   +  P     ++++R    Q  
Sbjct: 117 TLYTDVIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVRELGTQLG 170

Query: 186 ----ISWC 189
               I W 
Sbjct: 171 MPDSIVWR 178


>gi|281411738|ref|YP_003345817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga naphthophila RKU-10]
 gi|281372841|gb|ADA66403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga naphthophila RKU-10]
          Length = 358

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 58/199 (29%), Gaps = 44/199 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFG------------KIKFSAISVDHCLRETAK 67
            + VA+SGG DS + L + L      ++F             +IK            +  
Sbjct: 2   KVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKKVCC-----SPSDT 56

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RYALISEHA 114
            +   ++     L +   +V  K    +  +    R+              R+       
Sbjct: 57  ADAMRIAHF---LGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLM 113

Query: 115 K---TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISR 167
                       + H    ++E    +  R   +KG+ L       L  +  W    +  
Sbjct: 114 DYVLNQGFDAFASGHYA--RIE-FSEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIF 170

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     +E+IR    +  I
Sbjct: 171 PNGIYTKEEIRKIAEEAGI 189


>gi|167581513|ref|ZP_02374387.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia thailandensis TXDOH]
          Length = 539

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVTDPEHKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|56751331|ref|YP_172032.1| GMP synthase [Synechococcus elongatus PCC 6301]
 gi|81595982|sp|Q5N2F8|GUAA_SYNP6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56686290|dbj|BAD79512.1| GMP synthetase [Synechococcus elongatus PCC 6301]
          Length = 534

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  +R+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 219 EAIRE-IRARVGDKRVLLALSGGVDSSTLAFLLHRAIGDQ 257


>gi|308067527|ref|YP_003869132.1| GMP synthase (glutamin-hydrolyzing) [Paenibacillus polymyxa E681]
 gi|305856806|gb|ADM68594.1| GMP synthase (glutamin-hydrolyzing) [Paenibacillus polymyxa E681]
          Length = 512

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 62/185 (33%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V    +L A+SGG DS  + + +H  + D      + + + +DH  LR+   +   
Sbjct: 211 IRQQVGDKKVLCALSGGVDSSVVAMLIHKAIGD------QLTCMFIDHGLLRKGEAESVM 264

Query: 70  VRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
             +V      +++       +          P+        E  Y    E ++  + T +
Sbjct: 265 ETFVGKF--DMKVVKIDARERFLSKLAGVDDPEQKRKIIGNEFIYVFEEESSQFDDFTFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  ++   +  P     ++++R    
Sbjct: 323 AQGTLYTDIVE------SGTATAQTIKSHHNVGGLPENMKFKLIEPLNALFKDEVRKVGE 376

Query: 183 QRNIS 187
           +  + 
Sbjct: 377 ECGLP 381


>gi|198283571|ref|YP_002219892.1| GMP synthase large subunit [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666576|ref|YP_002426196.1| GMP synthase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248092|gb|ACH83685.1| GMP synthase, large subunit [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218518789|gb|ACK79375.1| GMP synthase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 514

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 24/197 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             S +++    +R+ V    ++ A+SGG DS   ++ +H  + D      + + I VD+ 
Sbjct: 200 MHSYVDTAVATIRAQVGKGRVIAALSGGVDSAVAVVLIHRAIGD------QLTCIFVDNG 253

Query: 62  -LRETAKDEVRYVSDVCSRL-RIAHSVVSWKNSKPQTGLM----AAAREARYALISEHAK 115
            LR     E   V+ V     +I   VV  +                R+A   L  E  +
Sbjct: 254 LLR---FGEAEKVATVFRNYFQIPLQVVDARQRFLDVLADVTDPEKKRKAIGNLFIEIFE 310

Query: 116 T-----INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                   A  +     + D +E++  +      +    + G+ +     + L +  P  
Sbjct: 311 EESKHLEGADFLAQGTLYPDVIESISFKGPSATIKSHHNVGGLPE----RMRLQLVEPLR 366

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  + 
Sbjct: 367 ELFKDEVRELGRELGMP 383


>gi|167623309|ref|YP_001673603.1| GMP synthase [Shewanella halifaxensis HAW-EB4]
 gi|226739729|sp|B0TLJ4|GUAA_SHEHH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|167353331|gb|ABZ75944.1| GMP synthase, large subunit [Shewanella halifaxensis HAW-EB4]
          Length = 525

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +++ +    +++ +SGG DS  + + LH  + D      K + + VD+  L
Sbjct: 212 SIIEDAIERLKAQIGDDEVILGLSGGVDSSVVAMLLHRAIGD------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +       +    V  +N         A  EA+  +I           
Sbjct: 266 RLN---EAEQVMEMFGDHFGLNIVHVDAENRFLDAMAGEAEPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K +NA  +     + D +E+    + + +  K          +  D+ + +  P    
Sbjct: 323 SKKCVNAKWLAQGTIYPDVIESAGSATGKAHCIKS---HHNVGGLPDDMEMGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|158604989|gb|ABW74802.1| NAD+ synthetase [Campylobacter concisus 13826]
          Length = 245

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 42/193 (21%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E++ F ++       +L+ VSGG DS  +         D +   I  +A         ++
Sbjct: 9   ETLVFSLKDKTKGKKLLLGVSGGIDSAVVATLCARAKPDETHALIMPTA---------SS 59

Query: 67  KDE-VRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAA--AREARYALISEHA 114
             E +    ++C +L I + V+S +              + L     A   R +L+ +++
Sbjct: 60  NKENMDDALNLCEKLNIKYKVLSIEGILNAFYETIDVNLSNLRKGNLAARVRMSLLYDYS 119

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            +INA +I T              S +     G G        ++        P     +
Sbjct: 120 SSINALVIGT--------------SNKSELMLGYG-------TIFGDLACAINPIGELYK 158

Query: 175 EDIRSFLLQRNIS 187
            +I  F     + 
Sbjct: 159 SEIFEFAKHLGVD 171


>gi|53719738|ref|YP_108724.1| GMP synthase [Burkholderia pseudomallei K96243]
 gi|76810657|ref|YP_333938.1| GMP synthase [Burkholderia pseudomallei 1710b]
 gi|81379520|sp|Q63T42|GUAA_BURPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206797|sp|Q3JR65|GUAA_BURP1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52210152|emb|CAH36130.1| GMP synthase [glutamine-hydrolyzing] [Burkholderia pseudomallei
           K96243]
 gi|76580110|gb|ABA49585.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1710b]
          Length = 547

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 213 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 266

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 267 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVADPEHKRKIIGREFVEVF 322

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 323 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 379

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 380 RDLFKDEVRELGVALGLP 397


>gi|167816341|ref|ZP_02448021.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 91]
 gi|254189258|ref|ZP_04895769.1| GMP synthase [Burkholderia pseudomallei Pasteur 52237]
 gi|254259268|ref|ZP_04950322.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1710a]
 gi|157936937|gb|EDO92607.1| GMP synthase [Burkholderia pseudomallei Pasteur 52237]
 gi|254217957|gb|EET07341.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1710a]
          Length = 539

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVADPEHKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|262306099|gb|ACY45642.1| gln amidotransferase [Prokoenenia wheeleri]
          Length = 196

 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++ +V    +L+ +SGG DS      LH     +S  + +  A+ +D+   R+    E 
Sbjct: 36  YIKKIVGXNKVLMLLSGGVDSTVCAALLH-----KSLKEGQVIAVHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVV 87
             V     RL +   VV
Sbjct: 88  LQVEQSLKRLGLKIKVV 104


>gi|213029130|ref|ZP_03343577.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 46

 Score = 46.4 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 180 FLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL 226
           + ++  + W ED SN DD ++R  +R       L  L  +   F   
Sbjct: 4   WAVRHGLCWIEDESNQDDAYDRNFLRLR----ALPLLQQRWPHFPRR 46


>gi|153953713|ref|YP_001394478.1| tRNA-specific 2-thiouridylase MnmA [Clostridium kluyveri DSM 555]
 gi|219854333|ref|YP_002471455.1| hypothetical protein CKR_0990 [Clostridium kluyveri NBRC 12016]
 gi|205813712|sp|A5N749|MNMA_CLOK5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146346594|gb|EDK33130.1| TrmU [Clostridium kluyveri DSM 555]
 gi|219568057|dbj|BAH06041.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 356

 Score = 46.4 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 54/203 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-----------------VLSDRSFGKIKFSAISVDHCL 62
             ++V +SGG DS      L                      D   G    SA+      
Sbjct: 3   KKVVVGMSGGVDSSVAAHLLKEQGYEVIGVTMQVWQEDDYYEDMESGCCSLSAV------ 56

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARY 107
                ++ + V      L I H V+++K +  +                    A  +  Y
Sbjct: 57  -----EDAKMV---AYHLNIPHYVMNFKEAFKKNVIDYFIQEYMEGKTPNPCIACNK--Y 106

Query: 108 ALISEHAKT---INATLIMTAHTFDDQLETVYMRS-QRDYAEKGMGLSGMCDTILYDLNL 163
               E  K    + A  + T H     +E +  R   R   +     +     +      
Sbjct: 107 IKFDELLKRAMDLGADYVATGHYAT--VEKINDRYTLRKSKDHNKDQTYALYNLTQFQLA 164

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
               P    ++E+IR    +  +
Sbjct: 165 HTLMPCGIYKKEEIREIAREIGL 187


>gi|126660833|ref|ZP_01731927.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Cyanothece sp. CCY0110]
 gi|126617884|gb|EAZ88659.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Cyanothece sp. CCY0110]
          Length = 542

 Score = 46.4 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45
           E++R  +R+ V    +L+A+SGG DS  L   LH  + D
Sbjct: 227 ETIRE-IRAKVRDKRVLLALSGGVDSSTLAFLLHQAIGD 264


>gi|81299000|ref|YP_399208.1| GMP synthase [Synechococcus elongatus PCC 7942]
 gi|81167881|gb|ABB56221.1| GMP synthase (glutamine-hydrolyzing) [Synechococcus elongatus PCC
           7942]
          Length = 575

 Score = 46.4 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  +R+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 260 EAIRE-IRARVGDKRVLLALSGGVDSSTLAFLLHRAIGDQ 298


>gi|83953728|ref|ZP_00962449.1| hypothetical protein NAS141_05873 [Sulfitobacter sp. NAS-14.1]
 gi|83841673|gb|EAP80842.1| hypothetical protein NAS141_05873 [Sulfitobacter sp. NAS-14.1]
          Length = 233

 Score = 46.4 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 37/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++  SGG DS+ L      V + R    +    +S D+  R   + E+ Y +    RL 
Sbjct: 4   IVI-CSGGLDSVSLAHM---VAAKRKLTGL----VSFDYGQRH--RKELDYAALCAKRLD 53

Query: 82  IAHSVV----------------SWKNSKPQTGLMAAA------REAR-YALISEHAKTIN 118
           + H ++                                     R A    +    A    
Sbjct: 54  VPHDIIDMRGIGAALTGSALTDDVDVPDGHYAEETMRVTVVPNRNAIMLTVAYGIAAARG 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              + TA    D          R    +            Y  ++ +  PF+   + DI 
Sbjct: 114 DQAVATAVHGGDH---FIYPDCRPDFTQAFEFMQYMALDGYA-DVSLYTPFVHRSKADIV 169

Query: 179 SFLLQRNISWCE 190
           +   + N  + E
Sbjct: 170 TEGQRHNTPFAE 181


>gi|254197639|ref|ZP_04904061.1| GMP synthase [Burkholderia pseudomallei S13]
 gi|169654380|gb|EDS87073.1| GMP synthase [Burkholderia pseudomallei S13]
          Length = 539

 Score = 46.4 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVADPEHKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|330975919|gb|EGH75985.1| GMP synthase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 511

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 31/191 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 207 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEG---- 256

Query: 70  VRYV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTI 117
              V +     + +   V+     +     +A             R       +E  K  
Sbjct: 257 -EQVMAMFAENMGVK--VIRANAEEQFLNNLAGESDPEKKRKIIGRTFIDVFDAESCKLD 313

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   +     + D +E+      +      +        +  ++NL +  P     ++++
Sbjct: 314 NIKYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEV 370

Query: 178 RSFLLQRNISW 188
           R   L+  + +
Sbjct: 371 RRLGLELGLPY 381


>gi|304387037|ref|ZP_07369292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|304338909|gb|EFM05008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 367

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 5   ANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 54

Query: 75  -------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALIS 111
                   V   + I   +V++                +A R          E ++    
Sbjct: 55  QDSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +           +     + L   I  P   
Sbjct: 115 DYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIF-PLGG 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    + N+ 
Sbjct: 174 LEKPEVRRLAAEFNLP 189


>gi|260590123|ref|ZP_05856036.1| argininosuccinate synthase [Blautia hansenii DSM 20583]
 gi|260539635|gb|EEX20204.1| argininosuccinate synthase [Blautia hansenii DSM 20583]
          Length = 423

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 41/220 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD- 59
           M+++ I++    +   V    +++A SGG D+  L      +   +     +     ++ 
Sbjct: 1   MYITFIQNNS--LEDFVMKEKVILAYSGGLDTTAL------IPWLKENFDYEVICCCINC 52

Query: 60  ------HCLRETAKDE-------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR 106
                   L E A             V + C    +                 + AR   
Sbjct: 53  GQGSELDGLEERAALSGASKLYIEDIVDEFCDDYIVPCVQAGAVYENKYLLGTSMARPPI 112

Query: 107 YALISEHAKTINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
              + E A+   A  I    T   +DQ+     R +         L  +    + D+   
Sbjct: 113 AKKLVEIARKEGAVAICHGATGKGNDQI-----RFELGIKALAPDLKIIAPWRMTDV--- 164

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCED-PSNTDDRFERVR 203
               +    RED   +     I    D P N  + + R R
Sbjct: 165 ----WTMQSREDEMEYCKAHGI----DLPFNMSNSYSRDR 196


>gi|254672922|emb|CBA07279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha275]
          Length = 367

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 5   ANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 54

Query: 75  -------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALIS 111
                   V   + I   +V++                +A R          E ++    
Sbjct: 55  QDSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +           +     + L   I  P   
Sbjct: 115 DYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIF-PLGG 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    + N+ 
Sbjct: 174 LEKPEVRRLAAEFNLP 189


>gi|167619625|ref|ZP_02388256.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia thailandensis Bt4]
 gi|257138790|ref|ZP_05587052.1| GMP synthase [Burkholderia thailandensis E264]
          Length = 539

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVADPEHKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|121535962|ref|ZP_01667756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosinus carboxydivorans Nor1]
 gi|121305454|gb|EAX46402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosinus carboxydivorans Nor1]
          Length = 364

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 65/215 (30%), Gaps = 59/215 (27%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------------------RSFGKIKFSAIS 57
           +     ++VA+SGG DS      L     D                     G    SA+ 
Sbjct: 1   MGAKPRVVVAMSGGVDSSLTAALLVHQGYDVIGVTMQIWENDLPEIDPEHRGCCSLSAV- 59

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------------ 105
                     ++ R V+D   +L I + V++++    +T +    RE             
Sbjct: 60  ----------NDARRVAD---KLGIPYYVLNFREMFQETVVDYFIREYAAGKTPNPCIAC 106

Query: 106 -RYALISEHAKT---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT--ILY 159
            RY       +    ++A  + T H    ++E       R       G+    D    LY
Sbjct: 107 NRYVKFEGLLQKALALDAQYVATGHYA--RIE---YDKGRGRYILRKGVDRTKDQSYALY 161

Query: 160 DLNLWISR----PFLRCRREDIRSFLLQRNISWCE 190
            LN    R    P     +   R    Q  ++  E
Sbjct: 162 HLNQHTLRHFLMPLGEYTKVQTRQMARQFGLAVAE 196


>gi|332284100|ref|YP_004416011.1| GMP synthase [Pusillimonas sp. T7-7]
 gi|330428053|gb|AEC19387.1| GMP synthase [Pusillimonas sp. T7-7]
          Length = 528

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R+ V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 210 IEEAVANIRAQVGSDEVILGLSGGVDSSVAAALIHKAIGD------QLTCVFVDHGLLRL 263

Query: 65  TAKDEVRYV-SDVCSRLRIAHSVVSWKNSKPQTG 97
               E   V S       I   V+    +    G
Sbjct: 264 N---EAEQVMSTFADHFGIK--VIHVDATDAFMG 292


>gi|323345389|ref|ZP_08085612.1| GMP synthase [Prevotella oralis ATCC 33269]
 gi|323093503|gb|EFZ36081.1| GMP synthase [Prevotella oralis ATCC 33269]
          Length = 514

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 68/199 (34%), Gaps = 35/199 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    ++  +    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 198 SFVETTVKELKEQLGNDRVILGLSGGVDSSVCATLLNKAI------GSNLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKNSK-----------PQTGLMAAAREARYALI 110
           R+       +   V      +   V+    SK           P+       R+      
Sbjct: 252 RKN-----EF-RKVMDAYQGLGLHVIGIDASKKFFDDLAGVTDPEQKRKIIGRDFVEVFN 305

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRP 168
           +E  K  +A  +     + D++E++        +  GM +        +  ++ L +  P
Sbjct: 306 AEAKKITDAKWLAQGTIYPDRIESL--------SITGMTIKSHHNVGGLPKEMKLQLCEP 357

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R    +  + 
Sbjct: 358 LQWLFKDEVRRVGRELGMP 376


>gi|152974868|ref|YP_001374385.1| exsB protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|189038895|sp|A7GMN2|QUEC_BACCN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|152023620|gb|ABS21390.1| exsB protein [Bacillus cytotoxicus NVH 391-98]
          Length = 220

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ ++  R   K E+   +++   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAMQQFA--------EVEAVTFNYNQRH--KLEIECAANIAKEL 55

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 56 GIKHTVLD 63


>gi|332669610|ref|YP_004452618.1| GMP synthase, large subunit [Cellulomonas fimi ATCC 484]
 gi|332338648|gb|AEE45231.1| GMP synthase, large subunit [Cellulomonas fimi ATCC 484]
          Length = 527

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 37/196 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V  A ++  +SGG DS      +   + D      + + + VDH  LR    ++V 
Sbjct: 216 IRTQVGDARVICGLSGGVDSSVAAALVQRAVGD------QLTCVFVDHGLLRSGEAEQVE 269

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
              D      +   VV  +         ++ P+T      RE    +  + A+ +     
Sbjct: 270 --KDFVDATGVQLKVVDARERFLHALAGHTDPETKRKIIGREF-IRVFEDAAREVVED-- 324

Query: 123 MTAHTFD-----------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             AH              D +E+             +        +  DL   +  P   
Sbjct: 325 AGAHGEAVKFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPDDLQFELVEPLRT 379

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R+  L+  + 
Sbjct: 380 LFKDEVRAVGLELGVP 395


>gi|320582784|gb|EFW97001.1| GMP synthetase, putative glutamine amidotransferase, putative
           [Pichia angusta DL-1]
          Length = 526

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 76/209 (36%), Gaps = 40/209 (19%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE+    +R+LV P A ++ AVSGG DS      +   + DR      F AI VD+ L
Sbjct: 208 NFIETEIKRIRTLVGPSAEVIGAVSGGVDSTVGAKIMKEAIGDR------FHAIYVDNGL 261

Query: 63  -RETAKDEVRYVSDVCSR-LRIAHSVVSWKNS-----KPQTGLMAAAREARY-------A 108
            R+    E   V       L I  +VV   N      K  T       + R         
Sbjct: 262 MRKN---ETVQVKKTLDEGLGINLTVVDASNQFLDKLKGVTDPE----KKRKIIGNTFIH 314

Query: 109 LISEHAKTI------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           +  + A  I          ++    + D +E++  +      +    + G+ +    D+ 
Sbjct: 315 VFEKVASEIKPKDGSQIEYLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLE----DMK 370

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWCED 191
           L +  P     ++++R       I   ED
Sbjct: 371 LKLIEPLRELFKDEVRDLGKLMGIP--ED 397


>gi|288799903|ref|ZP_06405362.1| ExsB protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333151|gb|EFC71630.1| ExsB protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 222

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 40/195 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I++ VSGG DS+ LL             +I    IS ++        E+ +    C 
Sbjct: 2   KDSIII-VSGGMDSITLLY--------DKKDEIALG-ISFNYG-SNHNNKEIPFAKMHCE 50

Query: 79  RLRIAHSVVSWK--NSKPQTGLMAAAR---EARYA------------------LISEHAK 115
            L I H  +     +   ++ L+  A    E  YA                  +    A+
Sbjct: 51  HLGIQHITIDLDFMHQYFKSSLLEGAEKIPEGHYASDNMKSTVVPFRNGIMLSIAIGIAE 110

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           +     ++ A+   D          R+   + M L+    T +   N+ I  P+    + 
Sbjct: 111 SNGLKKVLIANHGGDHT---IYPDCRNDFIEAMNLASQAGTFV---NITIEAPYTHITKG 164

Query: 176 DIRSFLLQRNISWCE 190
           DI     + +I++ E
Sbjct: 165 DIAKIGKKLDINFAE 179


>gi|217077171|ref|YP_002334887.1| GMP synthase [Thermosipho africanus TCF52B]
 gi|226739758|sp|B7IHI2|GUAA_THEAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|217037024|gb|ACJ75546.1| GMP synthase: glutamine-hydrolyzing [Thermosipho africanus TCF52B]
          Length = 513

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 63/190 (33%), Gaps = 28/190 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R +V    +++ +SGG DS  + + L   +   S          VD   LR   + EV 
Sbjct: 206 IRKVVGNDKVILGLSGGVDSSVVALLLDKAIGKNSIPIF------VDTGLLRLNERQEVE 259

Query: 72  YVSDVCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR----------YALISEHAKTIN- 118
              +   +L I   VV  K        G+     + +          Y    +  +    
Sbjct: 260 --ENF-RKLGIDIVVVDAKERFLSNLKGVEDPEEKRKIIGHTFIDVFYEASMKLLEKHGN 316

Query: 119 ATLIMTAHTFDDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
              +     + D +E+ V  R      +    + G+ + + +     I  PF    ++++
Sbjct: 317 IKYLAQGTLYPDIIESKVSERKAAAKIKTHHNVGGLPEKLPFK----IIEPFRYLFKDEV 372

Query: 178 RSFLLQRNIS 187
           R       + 
Sbjct: 373 RKIGKILGLP 382


>gi|210630940|ref|ZP_03296685.1| hypothetical protein COLSTE_00570 [Collinsella stercoris DSM 13279]
 gi|210160255|gb|EEA91226.1| hypothetical protein COLSTE_00570 [Collinsella stercoris DSM 13279]
          Length = 327

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 60/185 (32%), Gaps = 30/185 (16%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRY 72
           R  +     L+A+SGG DS  +   L   +        +   + V+H L R+    E   
Sbjct: 31  REQIGDKKALLALSGGVDSSVVAALLIKAIGK------QLICVHVNHGLMRKG---ESEQ 81

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREARY-------ALISEHAKTINATLI 122
           V DV  R ++  ++V    +     L+   A     R         +  E A+ +   + 
Sbjct: 82  VVDV-FRNQLDANLVYVDATDRFLSLLDGVAEPEAKRKIIGAEFIRVFEEEARKVGDEVS 140

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             A        T+Y         K          +  DL   +  P     ++++R    
Sbjct: 141 FLAQG------TIYPDILESDGVK---AHHNVGGLPDDLQFELCEPVRLLYKDEVRVVGR 191

Query: 183 QRNIS 187
           +  + 
Sbjct: 192 ELGLP 196


>gi|166712080|ref|ZP_02243287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 378

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 54/199 (27%), Gaps = 51/199 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            I+V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L IA          W           AA           RE ++    + 
Sbjct: 52  RRDAVAVCGVLGIAFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAHTFDDQL-----ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H    Q+         +R      ++   L  +  + L         P
Sbjct: 112 AQALGAERIATGHYA--QVAHRGGRWRLLRGADRGKDQSYFLHQLGQSQLAAT----LFP 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +  +R       + 
Sbjct: 166 IGDLEKSTLRRIARDAGLP 184


>gi|149278290|ref|ZP_01884428.1| argininosuccinate synthetase [Pedobacter sp. BAL39]
 gi|149231056|gb|EDM36437.1| argininosuccinate synthetase [Pedobacter sp. BAL39]
          Length = 397

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 52/194 (26%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              +++A SGG D S         +  DR    ++  ++ V+      +++E++ +    
Sbjct: 2   KKKVVLAFSGGLDTS----FCCIYLAQDRG---LEVHSVIVNTG--GFSEEELQEIEKRA 52

Query: 78  SRLRIA-HSVVSWKNSKPQTGLM-----------------AAAREARYALISEHAKTINA 119
             L +A H+VV    +     +                  +A R ++   I+ + K I A
Sbjct: 53  YALGVASHAVVDETANYYDGCIKYLVFGNVLKNATYPLSVSAERVSQATAIANYVKKIGA 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRR 174
             +  AH                    G G   +   +++++   N+ I  P   L+  R
Sbjct: 113 DYV--AH-----------------GSTGAGNDQVRFDMIFNIIIPNVEIITPIRDLKLSR 153

Query: 175 EDIRSFLLQRNISW 188
           E   ++L    + +
Sbjct: 154 EAEIAYLANHGVEY 167


>gi|116749554|ref|YP_846241.1| GMP synthase [Syntrophobacter fumaroxidans MPOB]
 gi|116698618|gb|ABK17806.1| GMP synthase (glutamine-hydrolyzing) [Syntrophobacter fumaroxidans
           MPOB]
          Length = 518

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 104/328 (31%), Gaps = 61/328 (18%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             S +ES    +R  V    ++ A+SGG DS  + + LH+ +  R         I V++ 
Sbjct: 204 MKSFVESAVASIREQVGDDQVICALSGGVDSSVVAVLLHNAIGSR------LHCIFVNNG 257

Query: 62  -LRETAKDEVRYVSD---------------VCSRLRIAHSVVSWKNSKPQTGLMAAAREA 105
            LR+   + V+ V                    RL+        +       +    REA
Sbjct: 258 LLRKGEAESVQRVFRDHFSINLIYADASDLFLERLKDVTDPERKRKIIGNLFVELFEREA 317

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
                    +  +   +     + D +E+V  +      +    + G+ +     +NL +
Sbjct: 318 --------GRLESVKYLAQGTLYPDVIESVSFKGPSATIKTHHNVGGLPE----RMNLKL 365

Query: 166 SRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRR-------------FVRDID 212
             P     ++++R    +  +             ER+ +R               V    
Sbjct: 366 IEPLRELFKDEVRMLGRELGLP------------ERIIMRHPFPGPGLAIRTIGAVTPES 413

Query: 213 LHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSA 272
           L  L    +   +          +     + + +RS + +  D    D  +    +    
Sbjct: 414 LEILRDADRIILEEIEASGWYDHVWQAFAVLLPIRS-VGVMGDERTYDQVVAVRAVESVD 472

Query: 273 AICGGQISLPGYRSMERVMLFLKSGKRG 300
           A+      LP Y  ++R+   + +  +G
Sbjct: 473 AMTADWARLP-YEVLQRISNRIINEVKG 499


>gi|322805504|emb|CBZ03068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum H04402 065]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 67/242 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVDHC 61
              +LV +SGG DS      L                      ++  G    SA+     
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAV----- 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREA- 105
                  + R V++   ++ I   V+++K++  +                    A  +  
Sbjct: 57  ------ADARRVAN---KIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFI 107

Query: 106 RYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           +++   + A  +    + T H       +D+   +  +S+ D  ++   L  +    L  
Sbjct: 108 KFSSFLDKAMAMGIDYVATGHYAIIEKHNDRY--IIKKSEDDKKDQTYALYNLTQFQLER 165

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVRDI 211
             +    P  + ++  IR    +  +     +D       P N   R+ + R    VR+ 
Sbjct: 166 TLM----PCGQYKKSKIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREG 221

Query: 212 DL 213
           + 
Sbjct: 222 NF 223


>gi|312875501|ref|ZP_07735504.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2053A-b]
 gi|325912819|ref|ZP_08175197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 60-B]
 gi|311089012|gb|EFQ47453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2053A-b]
 gi|325477812|gb|EGC80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 60-B]
          Length = 375

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGVC-------TATEDFEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++                  R          E ++    + A  ++
Sbjct: 61  RVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D+      MR +    ++   LS +    L         P     +
Sbjct: 121 ADYIAMGHYAKTVTDENGVVHMMRPKDGNKDQTYFLSQVTQEQLKKA----IFPLADLSK 176

Query: 175 EDIRSFLLQRNIS 187
             +R    Q  ++
Sbjct: 177 PQVRMIAEQAGLA 189


>gi|261881270|ref|ZP_06007697.1| GMP synthase [Prevotella bergensis DSM 17361]
 gi|270331979|gb|EFA42765.1| GMP synthase [Prevotella bergensis DSM 17361]
          Length = 514

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +E+    ++  +    +++ +SGG DS    + L+  +          + I VDH L
Sbjct: 198 SFVETTVEELKKQLGNDRVILGLSGGVDSSVCAVLLNRAIGK------NLTCIFVDHGL 250


>gi|259500706|ref|ZP_05743608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners DSM 13335]
 gi|302191396|ref|ZP_07267650.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus iners AB-1]
 gi|309803957|ref|ZP_07698040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 11V1-d]
 gi|309809301|ref|ZP_07703170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312873992|ref|ZP_07734028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653459|ref|ZP_07906380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners ATCC 55195]
 gi|325911482|ref|ZP_08173893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 143-D]
 gi|329921278|ref|ZP_08277716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 1401G]
 gi|259168090|gb|EEW52585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners DSM 13335]
 gi|308163959|gb|EFO66223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308170414|gb|EFO72438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311090541|gb|EFQ48949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315489150|gb|EFU78791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners ATCC 55195]
 gi|325476682|gb|EGC79837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners UPII 143-D]
 gi|328934570|gb|EGG31074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners SPIN 1401G]
          Length = 375

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGVC-------TATEDFEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++                  R          E ++    + A  ++
Sbjct: 61  RVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D+      MR +    ++   LS +    L         P     +
Sbjct: 121 ADYIAMGHYAKTVTDENGVVHMMRPKDGNKDQTYFLSQVTQEQLKKA----IFPLADLSK 176

Query: 175 EDIRSFLLQRNIS 187
             +R    Q  ++
Sbjct: 177 PQVRMIAEQAGLA 189


>gi|237794471|ref|YP_002862023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Ba4 str. 657]
 gi|229260617|gb|ACQ51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Ba4 str. 657]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 67/242 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVDHC 61
              +LV +SGG DS      L                      ++  G    SA+     
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAV----- 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREA- 105
                  + R V++   ++ I   V+++K++  +                    A  +  
Sbjct: 57  ------ADARRVAN---KIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFI 107

Query: 106 RYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           +++   + A  +    + T H       +D+   +  +S+ D  ++   L  +    L  
Sbjct: 108 KFSSFLDKAMAMGIDYVATGHYAIIKKHNDRY--IIKKSEDDKKDQTYALYNLTQFQLER 165

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVRDI 211
             +    P  + ++  IR    +  +     +D       P N   R+ + R    VR+ 
Sbjct: 166 TLM----PCGQYKKSKIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREG 221

Query: 212 DL 213
           + 
Sbjct: 222 NF 223


>gi|168183036|ref|ZP_02617700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
 gi|182673881|gb|EDT85842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum Bf]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 67/242 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVDHC 61
              +LV +SGG DS      L                      ++  G    SA+     
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAV----- 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREA- 105
                  + R V++   ++ I   V+++K++  +                    A  +  
Sbjct: 57  ------ADARRVAN---KIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFI 107

Query: 106 RYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           +++   + A  +    + T H       +D+   +  +S+ D  ++   L  +    L  
Sbjct: 108 KFSSFLDKAMAMGIDYVATGHYAIIKKHNDRY--IIKKSEDDKKDQTYALYNLTQFQLER 165

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVRDI 211
             +    P  + ++  IR    +  +     +D       P N   R+ + R    VR+ 
Sbjct: 166 TLM----PCGQYKKSKIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREG 221

Query: 212 DL 213
           + 
Sbjct: 222 NF 223


>gi|168178604|ref|ZP_02613268.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226948452|ref|YP_002803543.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670342|gb|EDT82316.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916]
 gi|226842334|gb|ACO85000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 67/242 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVDHC 61
              +LV +SGG DS      L                      ++  G    SA+     
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAV----- 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREA- 105
                  + R V++   ++ I   V+++K++  +                    A  +  
Sbjct: 57  ------ADARRVAN---KIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFI 107

Query: 106 RYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           +++   + A  +    + T H       +D+   +  +S+ D  ++   L  +    L  
Sbjct: 108 KFSSFLDKAMAMGIDYVATGHYAIIEKHNDRY--IIKKSEDDKKDQTYALYNLTQFQLER 165

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVRDI 211
             +    P  + ++  IR    +  +     +D       P N   R+ + R    VR+ 
Sbjct: 166 TLM----PCGQYKKSKIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREG 221

Query: 212 DL 213
           + 
Sbjct: 222 NF 223


>gi|153938615|ref|YP_001390533.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum F str.
           Langeland]
 gi|205810312|sp|A7GCM3|MNMA1_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|152934511|gb|ABS40009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. Langeland]
 gi|295318614|gb|ADF98991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum F str. 230613]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 67/242 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVDHC 61
              +LV +SGG DS      L                      ++  G    SA+     
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAV----- 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREA- 105
                  + R V++   ++ I   V+++K++  +                    A  +  
Sbjct: 57  ------ADARRVAN---KIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFI 107

Query: 106 RYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           +++   + A  +    + T H       +D+   +  +S+ D  ++   L  +    L  
Sbjct: 108 KFSSFLDKAMAMGIDYVATGHYAIIEKHNDRY--IIKKSEDDKKDQTYALYNLTQFQLER 165

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVRDI 211
             +    P  + ++  IR    +  +     +D       P N   R+ + R    VR+ 
Sbjct: 166 TLM----PCGQYKKSKIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREG 221

Query: 212 DL 213
           + 
Sbjct: 222 NF 223


>gi|156741720|ref|YP_001431849.1| GMP synthase [Roseiflexus castenholzii DSM 13941]
 gi|156233048|gb|ABU57831.1| GMP synthase, large subunit [Roseiflexus castenholzii DSM 13941]
          Length = 512

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V    ++ A+SGG DS    + +H  + DR       + + VD+  LR+   ++V 
Sbjct: 208 VRAQVGDGRVICALSGGVDSAVAALIVHHAIGDR------LTCVFVDNGLLRQGEAEQV- 260

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
            V+       I    V   +           P+        +       E  +   A  +
Sbjct: 261 -VATFREHFHIPLIAVDAADEFLEALAGVADPEQKRTIIGEKFVRIFEREARRIEGARFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+     Q+    K          +  D+ L +  P     ++++R+   
Sbjct: 320 AQGTLYPDVIESRAPDRQKGVTIK---THHNVGGLPADMQLTLVEPLRYLFKDEVRAAGH 376

Query: 183 QRNIS 187
              + 
Sbjct: 377 ALGLP 381


>gi|237812771|ref|YP_002897222.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia pseudomallei MSHR346]
 gi|237505145|gb|ACQ97463.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia pseudomallei MSHR346]
          Length = 539

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVADPEHKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|254421737|ref|ZP_05035455.1| glutamine amidotransferase, SNO family [Synechococcus sp. PCC 7335]
 gi|196189226|gb|EDX84190.1| glutamine amidotransferase, SNO family [Synechococcus sp. PCC 7335]
          Length = 542

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  VR+ V    +L+A+SGG DS  L   LH  + ++
Sbjct: 227 EAIRE-VRAKVGDQRVLLALSGGVDSSTLAFLLHKAIGEQ 265


>gi|195580620|ref|XP_002080133.1| GD21646 [Drosophila simulans]
 gi|194192142|gb|EDX05718.1| GD21646 [Drosophila simulans]
          Length = 677

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+   R  
Sbjct: 216 EECIRYIREKVGNNKVLLLVSGGVDSSVCAALL-----RRALYPHQIIAVHVDNGFMR-- 268

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
            K E   V      + I   V  
Sbjct: 269 -KKESEKVERSLRDIGIDLIVRK 290


>gi|169347058|ref|ZP_02866000.1| GMP synthase [Clostridium perfringens C str. JGS1495]
 gi|169296741|gb|EDS78870.1| GMP synthase [Clostridium perfringens C str. JGS1495]
          Length = 509

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V 
Sbjct: 208 IKKIVGDKKLICALSGGVDSSVAAVMVHKAVGK------QLTCIFVDHGLLRKDEGDQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +      + +       +        S P+T       E       E  K  +   ++ 
Sbjct: 262 KIFKEGFDMNLIRVNAQDRFLGKLKGVSDPETKRKIIGEEFIRVFEEEAGKLGDIKFLVQ 321

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
              + D +E                +         +  D+   +  P     ++++R+  
Sbjct: 322 GTIYPDVVE---------SGTDTSAVIKSHHNVGGLPEDMEFSLIEPLRELFKDEVRAVG 372

Query: 182 LQRNISW 188
            +  I  
Sbjct: 373 EELGIPH 379


>gi|110802816|ref|YP_699536.1| GMP synthase [Clostridium perfringens SM101]
 gi|110683317|gb|ABG86687.1| GMP synthase [Clostridium perfringens SM101]
          Length = 509

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V 
Sbjct: 208 IKKIVGDKKLICALSGGVDSSVAAVMVHKAVGK------QLTCIFVDHGLLRKDEGDQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +      + +       +        S P+T       E       E  K  +   ++ 
Sbjct: 262 KIFKEGFDMNLIRVNAQDRFLGKLKGVSDPETKRKIIGEEFIRVFEEEAGKLGDIKFLVQ 321

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
              + D +E                +         +  D+   +  P     ++++R+  
Sbjct: 322 GTIYPDVVE---------SGTDTSAVIKSHHNVGGLPEDMEFSLIEPLRELFKDEVRAVG 372

Query: 182 LQRNISW 188
            +  I  
Sbjct: 373 EELGIPH 379


>gi|281365319|ref|NP_620114.3| burgundy [Drosophila melanogaster]
 gi|21428562|gb|AAM49941.1| LD42771p [Drosophila melanogaster]
 gi|272407126|gb|AAF53975.3| burgundy [Drosophila melanogaster]
          Length = 683

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+   R  
Sbjct: 216 EECIRYIREKVGNNKVLLLVSGGVDSSVCAALL-----RRALYPHQIIAVHVDNGFMR-- 268

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
            K E   V      + I   V  
Sbjct: 269 -KKESEKVERSLRDIGIDLIVRK 290


>gi|18461323|gb|AAL71891.1|AF015270_1 GMP synthetase [Drosophila melanogaster]
          Length = 720

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+   R  
Sbjct: 216 EECIRYIREKVGNNKVLLLVSGGVDSSVCAALL-----RRALYPHQIIAVHVDNGFMR-- 268

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
            K E   V      + I   V  
Sbjct: 269 -KKESEKVERSLRDIGIDLIVRK 290


>gi|86608644|ref|YP_477406.1| GMP synthase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557186|gb|ABD02143.1| GMP synthase, glutamine-hydrolyzing [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 536

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 63/194 (32%), Gaps = 22/194 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++R  VR+ V    +L+A+SGG DS  L   LH  + D      + + + +D    R+ 
Sbjct: 220 EAIRE-VRARVGNKKVLLALSGGVDSSTLAFLLHKAIGD------QLTCVFIDQGFMRK- 271

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKT 116
             +  R +     +  I    V  +          + P+        E       E  + 
Sbjct: 272 -DEPQRLLRLFQEQFHIPVHYVDGQERFLRQLQGVTDPEEKRKRIGAEFIRVFEEESQRL 330

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFLRCR 173
                +     + D +E+          E+             +  +L   +  P  +  
Sbjct: 331 GPFEYLAQGTLYPDVIESANTHVDPVTGERIAVKIKSHHNVGGLPENLRFKLVEPLRKLF 390

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 391 KDEVRQLARSLGLP 404


>gi|41409587|ref|NP_962423.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254776776|ref|ZP_05218292.1| GMP synthase [Mycobacterium avium subsp. avium ATCC 25291]
 gi|50400366|sp|Q73U79|GUAA_MYCPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|41398418|gb|AAS06039.1| GuaA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 525

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   + +V+
Sbjct: 219 VRAQIGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGERAQVQ 272

Query: 72  --YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTIN---ATL 121
             +V+   + L  +  +    +     T          R+   A        +       
Sbjct: 273 RDFVAATGANLVTVDAADTFLQALAGVTNPEGKRKIIGRQFIRAFEGAVRDVLGDKPVEF 332

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+             +        +  DL   +  P     ++++R+  
Sbjct: 333 LVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPGDLKFTLVEPLRLLFKDEVRAVG 387

Query: 182 LQRNIS 187
            +  + 
Sbjct: 388 RELGLP 393


>gi|18311257|ref|NP_563191.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Clostridium perfringens str. 13]
 gi|110800712|ref|YP_696947.1| GMP synthase [Clostridium perfringens ATCC 13124]
 gi|168205103|ref|ZP_02631108.1| GMP synthase [Clostridium perfringens E str. JGS1987]
 gi|168211656|ref|ZP_02637281.1| GMP synthase [Clostridium perfringens B str. ATCC 3626]
 gi|168213184|ref|ZP_02638809.1| GMP synthase [Clostridium perfringens CPE str. F4969]
 gi|168216761|ref|ZP_02642386.1| GMP synthase [Clostridium perfringens NCTC 8239]
 gi|24211752|sp|Q8XI46|GUAA_CLOPE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|18145940|dbj|BAB81981.1| GMP synthetase [Clostridium perfringens str. 13]
 gi|110675359|gb|ABG84346.1| GMP synthase [Clostridium perfringens ATCC 13124]
 gi|170663325|gb|EDT16008.1| GMP synthase [Clostridium perfringens E str. JGS1987]
 gi|170710386|gb|EDT22568.1| GMP synthase [Clostridium perfringens B str. ATCC 3626]
 gi|170715290|gb|EDT27472.1| GMP synthase [Clostridium perfringens CPE str. F4969]
 gi|182381223|gb|EDT78702.1| GMP synthase [Clostridium perfringens NCTC 8239]
          Length = 509

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 26/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V 
Sbjct: 208 IKKIVGDKKLICALSGGVDSSVAAVMVHKAVGK------QLTCIFVDHGLLRKDEGDQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
            +      + +       +        S P+T       E       E  K  +   ++ 
Sbjct: 262 KIFKEGFDMNLIRVNAQDRFLGKLKGVSDPETKRKIIGEEFIRVFEEEAGKLGDIKFLVQ 321

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
              + D +E                +         +  D+   +  P     ++++R+  
Sbjct: 322 GTIYPDVVE---------SGTDTSAVIKSHHNVGGLPEDMEFSLIEPLRELFKDEVRAVG 372

Query: 182 LQRNISW 188
            +  I  
Sbjct: 373 EELGIPH 379


>gi|302391059|ref|YP_003826879.1| PP-loop domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203136|gb|ADL11814.1| PP-loop domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 272

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 42/184 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +LVA SGG DS  LL   H +L D++      +A++V+  +    + E     ++  ++ 
Sbjct: 21  LLVAFSGGVDSTLLLKVAHDILGDQA------AALTVEASIHPPGEAEEA--EELAQQMG 72

Query: 82  IAHSVVSWKNSKPQTGLMAAAR--EAR-----YALISE---HAKTINATLIMTAHTFDDQ 131
           + H +V     +        AR  + R     Y + S+    A       +     +DD 
Sbjct: 73  VEHILVEADPLQN----EDFARNDKLRCYYCKYNIFSDLKEIAAKEGYAELADGANYDDF 128

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWC 189
                        +   GL    +       L +  P       +E++R    + ++   
Sbjct: 129 -----------TGDYRPGLKAAEE-------LGVRSPLKEAEITKEEVRKLSKRLDLPTW 170

Query: 190 EDPS 193
           + PS
Sbjct: 171 DKPS 174


>gi|254458633|ref|ZP_05072057.1| GMP synthase [Campylobacterales bacterium GD 1]
 gi|207084399|gb|EDZ61687.1| GMP synthase [Campylobacterales bacterium GD 1]
          Length = 516

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L  +SGG DS  +   L+  + D      +   + VD+  LR+  +++V 
Sbjct: 213 IRQRVGTGKVLCGLSGGVDSSVVAALLYEAIGD------QLIPVFVDNGLLRKGEREQVE 266

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V  +   L+     V   +         S P+T               E  K      +
Sbjct: 267 EVFKI--NLKTPLITVDAADNFLGKLAGISDPETKRKIIGHTFIEEFEKEAKKHDGIKFL 324

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E++ +    +  +    + G+ D + ++    +  P     ++++R   L
Sbjct: 325 AQGTLYPDVIESISVNGPSEVIKSHHNVGGLPDWMDFE----LIEPLRELFKDEVRKIGL 380

Query: 183 QRNIS 187
           +  + 
Sbjct: 381 ELGLP 385


>gi|172038179|ref|YP_001804680.1| GMP synthase [Cyanothece sp. ATCC 51142]
 gi|254800094|sp|B1WY30|GUAA_CYAA5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|171699633|gb|ACB52614.1| GMP synthetase [Cyanothece sp. ATCC 51142]
          Length = 542

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45
           E++R  +R+ V    +L+A+SGG DS  L   LH  + D
Sbjct: 227 ETIRE-IRAKVRDKRVLLALSGGVDSSTLAFLLHQAIGD 264


>gi|90021107|ref|YP_526934.1| GMP synthase [Saccharophagus degradans 2-40]
 gi|89950707|gb|ABD80722.1| GMP synthase (glutamine-hydrolyzing) [Saccharophagus degradans
           2-40]
          Length = 542

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 67/189 (35%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V    +L+ +SGG DS  +   LH  + D      K + + VD+  LR+   D   
Sbjct: 238 VRAQVGDDKVLLGLSGGVDSSVVAALLHKAIGD------KLTCVFVDNGLLRKNEGD--- 288

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGL---MAAAREARY-------ALISEHAKTI-NA 119
            V D     + +   V+    +    G     +   + R         +  + A  + + 
Sbjct: 289 QVMDMFAKNMGVK--VIRADAADLFLGNLAGESDPEKKRKIIGNTFIDIFDQEASKLKDV 346

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + +      +        +  D+   +  P     ++++R 
Sbjct: 347 KWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRK 403

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 404 IGLELGLPY 412


>gi|310828741|ref|YP_003961098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
 gi|308740475|gb|ADO38135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium limosum KIST612]
          Length = 359

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 55/191 (28%), Gaps = 35/191 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            I+V +SGG DS    + L         V       K +    +        A ++   V
Sbjct: 2   KIVVGMSGGVDSSVAALLLKQQGYDVIGVFMKNWEEKDEDGVCT--------ATEDYEDV 53

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
             VC  + I +  V++                ++ R                 +      
Sbjct: 54  QRVCETIDIPYYTVNFTREYYDHVFAYFLDEYKKGRTPNPDVLCNKEIKFKRFLDYALGV 113

Query: 117 INATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           +   ++ T H    D  E    R  R +         +C    + L   +  P     ++
Sbjct: 114 VGGDVLATGHYAQKDVHEG-KFRLIRAFDHNKDQTYFLCQLGQHQL-ENVMFPIGHLDKK 171

Query: 176 DIRSFLLQRNI 186
           ++R    + N+
Sbjct: 172 EVREIAEKNNL 182


>gi|238921023|ref|YP_002934538.1| GMP synthase [Edwardsiella ictaluri 93-146]
 gi|259647680|sp|C5BER5|GUAA_EDWI9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|238870592|gb|ACR70303.1| GMP synthase [Edwardsiella ictaluri 93-146]
          Length = 525

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +    +++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAVVRMREQIGDDEVILGLSGGVDSSVTALLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V D    R  +    V+ +          + P+       R        E
Sbjct: 266 RLN---EAEQVMDMFGDRFGLNIIHVNAEARFLSALSGIADPEAKRKTIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 AAKLPQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPEEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|88809139|ref|ZP_01124648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7805]
 gi|88787081|gb|EAR18239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7805]
          Length = 409

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 53/198 (26%), Gaps = 35/198 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDE 69
           +R       + V +SGG DS      L     D     +             L + A   
Sbjct: 41  LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWDVEGLTLWLMSGKGACCAEGLVDAAG-- 98

Query: 70  VRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAA---------REARYALISEHAK- 115
                 +C +L I H VV    +++       +             R  R    S   + 
Sbjct: 99  ------ICEQLEIPHHVVDSRETFQREIVNGLIEGYQAGITPLPCSRCNRAVKFSPMLRW 152

Query: 116 ---TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
                    I T H      DD   +   R  R    +      + D +  ++   +  P
Sbjct: 153 AQEERGLARIATGHYARLRFDDS--SSRWRLLRGLDARKDQSYFLYD-LTQEVLDRVVFP 209

Query: 169 FLRCRREDIRSFLLQRNI 186
                + D R    +  +
Sbjct: 210 LGELTKPDTRLEAARHGL 227


>gi|330813834|ref|YP_004358073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486929|gb|AEA81334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 379

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 68/212 (32%), Gaps = 35/212 (16%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC----LRET--AKDEV 70
                ++VA+SGG DS  +   L           ++      D+        T  A  ++
Sbjct: 21  PEETKVVVAMSGGVDSSTVAGLLKEQNYHVIGITLQLY----DYGKIGKTSGTCCAGKDI 76

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                V  +L I H V ++++   +  +   A                   ++  + + A
Sbjct: 77  YDAKRVSEQLNIEHHVFNYESLFKEEVIEKFADSYLKGETPIPCVSCNQTVKFRDLFKSA 136

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFL 170
           K + A  ++T H              +    + +  +      L+    +   ++  P  
Sbjct: 137 KKLGADALVTGHYV-----KRLGNLNQSKMYQPVDANRDQSYFLFSTTQEQLDYLRFPLA 191

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERV 202
              +++ R    + N+S  + P + D  F   
Sbjct: 192 DLPKQETRDLAKKMNLSVADKPDSQDICFVPN 223


>gi|300710635|ref|YP_003736449.1| GMP synthase subunit B [Halalkalicoccus jeotgali B3]
 gi|299124318|gb|ADJ14657.1| GMP synthase subunit B [Halalkalicoccus jeotgali B3]
          Length = 305

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 65/180 (36%), Gaps = 20/180 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  +  A+ ++A+SGG DS       +  + D      + + + VD  L R+   ++V 
Sbjct: 15  IRDEIGDANAVIALSGGVDSSVAAALAYEAVGD------QLTPVYVDTGLMRKGETEQVS 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTINATLIMTAHT 127
                   LR+  +   + +         A RE             AK  +A  ++    
Sbjct: 69  ETFSYMESLRVVDAEERFLDLLSGVTDPEAKREVIGEGFIREFEREAKEADADYLVQGTI 128

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + D++E           +    + G+ D I ++    I  P     ++++R    +  + 
Sbjct: 129 YPDRIE------SEGGIKSHHNVGGLPDVIDFEG---IVEPVRDLYKDEVREVARELGLE 179


>gi|227509854|ref|ZP_03939903.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190778|gb|EEI70845.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 538

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+    E +
Sbjct: 237 IRETVGDKKVLLGLSGGVDSSVVGVLLHKAI------GSQLTSIFVDHGLLRKN---EAQ 287

Query: 72  YVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D +  +  +    V  +          + P+        E       E  K      
Sbjct: 288 QVMDSLVGKFGLNIIKVDAQERFLSKLEGVTDPEKKRKIIGNEFIQVFNDEARKLDGIDF 347

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P  +  +++ R   
Sbjct: 348 LAQGTLYTDVVE------SGTDTAQTIKSHHNVGGLPKDMKFKLIEPLNKLFKDEAREIG 401

Query: 182 LQRN----ISWC 189
            +      + W 
Sbjct: 402 EKLGMPESLVWR 413


>gi|227512790|ref|ZP_03942839.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus buchneri ATCC 11577]
 gi|227522914|ref|ZP_03952963.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus hilgardii ATCC 8290]
 gi|227083990|gb|EEI19302.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus buchneri ATCC 11577]
 gi|227089943|gb|EEI25255.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus hilgardii ATCC 8290]
          Length = 538

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 62/192 (32%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+    E +
Sbjct: 237 IRETVGDKKVLLGLSGGVDSSVVGVLLHKAI------GSQLTSIFVDHGLLRKN---EAQ 287

Query: 72  YVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V D +  +  +    V  +          + P+        E       E  K      
Sbjct: 288 QVMDSLVGKFGLNIIKVDAQERFLSKLEGVTDPEKKRKIIGNEFIQVFNDEARKLDGIDF 347

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P  +  +++ R   
Sbjct: 348 LAQGTLYTDVVE------SGTDTAQTIKSHHNVGGLPKDMKFKLIEPLNKLFKDEAREIG 401

Query: 182 LQRN----ISWC 189
            +      + W 
Sbjct: 402 EKLGMPESLVWR 413


>gi|116629824|ref|YP_814996.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase,
           PP-loop ATPase [Lactobacillus gasseri ATCC 33323]
 gi|116095406|gb|ABJ60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri ATCC 33323]
          Length = 383

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 16  RVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 68

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V   + I +  ++++    +             R          E ++    + A  ++
Sbjct: 69  KVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLD 128

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D+      MR +    ++   LS +      D    +  P     +
Sbjct: 129 ADYIAMGHYAATKVDENGIVHMMRPKDGNKDQTYFLSQLSQ----DQLKKVIFPLANLTK 184

Query: 175 EDIRSFLLQRNIS 187
             +R   +   ++
Sbjct: 185 PQVREIAIDAGLA 197


>gi|108804192|ref|YP_644129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
 gi|123177389|sp|Q1AWB1|MNMA_RUBXD RecName: Full=Bifunctional protein nifU/mnmA; Includes: RecName:
           Full=NifU-like protein; Includes: RecName:
           Full=tRNA-specific 2-thiouridylase mnmA
 gi|108765435|gb|ABG04317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 488

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 58/196 (29%), Gaps = 49/196 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDEVRYV 73
           ++ A+SGG DS    + L            +  A++    L +         + D V + 
Sbjct: 146 VVAAMSGGVDSAVTALLLKE-------RGYEVVAVTF--RLHDGEPGSRSCCSPDTVLFA 196

Query: 74  SDVCSRLRIAHSVVSW------KNSKPQTGLMAAAR----------EARYALISEHAKTI 117
            +    L I H  ++       +  +   G  AA R            ++   +  A  +
Sbjct: 197 RETAHGLGIPHFTLNLRELFDRRVMRDFVGSYAAGRTPNPCVACNAHVKFHAAAFLADRL 256

Query: 118 NATLIMTAHTFDDQLETVYMR------SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
               + T H           R       +R    +      +       L   I  P   
Sbjct: 257 GLRHVATGHYA---------RVGEGPCLERPEDGRKDQTYVLWPVPPRLLGRTIF-PLGD 306

Query: 172 CRREDIRSFLLQRNIS 187
            R+ ++R    +R ++
Sbjct: 307 YRKSEVRRIAEERGLA 322


>gi|282851667|ref|ZP_06261032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 224-1]
 gi|311110534|ref|ZP_07711931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri MV-22]
 gi|205822450|sp|Q042R4|MNMA_LACGA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|282557635|gb|EFB63232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 224-1]
 gi|311065688|gb|EFQ46028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri MV-22]
          Length = 375

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V   + I +  ++++    +             R          E ++    + A  ++
Sbjct: 61  KVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D+      MR +    ++   LS +      D    +  P     +
Sbjct: 121 ADYIAMGHYAATKVDENGIVHMMRPKDGNKDQTYFLSQLSQ----DQLKKVIFPLANLTK 176

Query: 175 EDIRSFLLQRNIS 187
             +R   +   ++
Sbjct: 177 PQVREIAIDAGLA 189


>gi|323475431|gb|ADX86037.1| exsB protein [Sulfolobus islandicus REY15A]
          Length = 464

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 34/129 (26%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS     A   +L +      + + I  ++   +  + E   V  +   L+
Sbjct: 245 LVVA-SGGLDSTV---AATKLLRE----GHEVTLIHFNYH-HKAEEREREAVRKIAEHLQ 295

Query: 82  IAHSVVS-------------------WKNSKPQTGLMAA-----AREAR-YALISEHAKT 116
           +    ++                    K+ K + G   A     AR    ++     A+ 
Sbjct: 296 VPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGAEFAHEWVPARNLIFFSAALAIAEA 355

Query: 117 INATLIMTA 125
                I + 
Sbjct: 356 YGYDAIASG 364


>gi|302343799|ref|YP_003808328.1| GMP synthase, large subunit [Desulfarculus baarsii DSM 2075]
 gi|301640412|gb|ADK85734.1| GMP synthase, large subunit [Desulfarculus baarsii DSM 2075]
          Length = 517

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
            ++ +    +L A+SGG DS  + + LH  +            I VD+  LR     EV 
Sbjct: 214 FKARLGGKKVLCALSGGVDSSVVALLLHKAI------GPDLHCIFVDNGLLRAG---EVN 264

Query: 72  YVSDVCSR-LRIAHSV-----VSWKNSKPQTGLMAAAREARYAL---ISEHAKTIN-ATL 121
            VS+V      +   V     +               R   +         AK I     
Sbjct: 265 EVSNVFREVFGVNLVVAKAAELFLSRLAGVVDPEQKRRIIGHTFIEVFEAEAKKIGKVDY 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V  R      +    + G+ +     + + +  P     +++ R   
Sbjct: 325 LAQGTLYPDVIESVSFRGPSAVIKSHHNVGGLPE----HMKMELVEPLRELFKDECREVG 380

Query: 182 LQRNIS 187
            +  + 
Sbjct: 381 RELGLP 386


>gi|227828356|ref|YP_002830136.1| exsB protein [Sulfolobus islandicus M.14.25]
 gi|229585586|ref|YP_002844088.1| exsB protein [Sulfolobus islandicus M.16.27]
 gi|238620549|ref|YP_002915375.1| exsB protein [Sulfolobus islandicus M.16.4]
 gi|227460152|gb|ACP38838.1| exsB protein [Sulfolobus islandicus M.14.25]
 gi|228020636|gb|ACP56043.1| exsB protein [Sulfolobus islandicus M.16.27]
 gi|238381619|gb|ACR42707.1| exsB protein [Sulfolobus islandicus M.16.4]
 gi|323478152|gb|ADX83390.1| exsB protein [Sulfolobus islandicus HVE10/4]
          Length = 464

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 34/129 (26%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS     A   +L +      + + I  ++   +  + E   V  +   L+
Sbjct: 245 LVVA-SGGLDSTV---AATKLLRE----GHEVTLIHFNYH-HKAEEREREAVRKIAEHLQ 295

Query: 82  IAHSVVS-------------------WKNSKPQTGLMAA-----AREAR-YALISEHAKT 116
           +    ++                    K+ K + G   A     AR    ++     A+ 
Sbjct: 296 VPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGAEFAHEWVPARNLIFFSAALAIAEA 355

Query: 117 INATLIMTA 125
                I + 
Sbjct: 356 YGYDAIASG 364


>gi|229579998|ref|YP_002838398.1| exsB protein [Sulfolobus islandicus Y.G.57.14]
 gi|229581341|ref|YP_002839740.1| exsB protein [Sulfolobus islandicus Y.N.15.51]
 gi|284998612|ref|YP_003420380.1| exsB protein [Sulfolobus islandicus L.D.8.5]
 gi|228010714|gb|ACP46476.1| exsB protein [Sulfolobus islandicus Y.G.57.14]
 gi|228012057|gb|ACP47818.1| exsB protein [Sulfolobus islandicus Y.N.15.51]
 gi|284446508|gb|ADB88010.1| exsB protein [Sulfolobus islandicus L.D.8.5]
          Length = 464

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 34/129 (26%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS     A   +L +      + + I  ++   +  + E   V  +   L+
Sbjct: 245 LVVA-SGGLDSTV---AATKLLRE----GHEVTLIHFNYH-HKAEEREREAVRKIAEHLQ 295

Query: 82  IAHSVVS-------------------WKNSKPQTGLMAA-----AREAR-YALISEHAKT 116
           +    ++                    K+ K + G   A     AR    ++     A+ 
Sbjct: 296 VPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGAEFAHEWVPARNLIFFSAALAIAEA 355

Query: 117 INATLIMTA 125
                I + 
Sbjct: 356 YGYDAIASG 364


>gi|154151678|ref|YP_001405296.1| GMP synthase subunit B [Candidatus Methanoregula boonei 6A8]
 gi|166215312|sp|A7IA92|GUAAB_METB6 RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|154000230|gb|ABS56653.1| GMP synthase, large subunit [Methanoregula boonei 6A8]
          Length = 305

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 53/197 (26%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS---------------------FGKI 51
           ++       +++A+SGG DS          + DR                      FG I
Sbjct: 15  IQKEAGNEKVVMALSGGVDSSVCASLAARAIGDRLIPIYIDTGLMRKGETERIKAVFGNI 74

Query: 52  KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS 111
           +   +         A DE  +V+ +     I          K +  +    R  R  +  
Sbjct: 75  RLQVV--------DAGDE--FVAALA---GI------TDPEKKRKAIGE--RFIR--VFE 111

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             AK   AT ++    + D++E           +    + GM +   +     +  P   
Sbjct: 112 REAKKSGATCLLQGTIYPDRIE------SEGGIKSHHNVGGMPEHTAFKK---VIEPIRD 162

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R       +  
Sbjct: 163 LYKDEVREVAGALGLPP 179


>gi|53723708|ref|YP_103163.1| GMP synthase [Burkholderia mallei ATCC 23344]
 gi|67641679|ref|ZP_00440448.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia mallei GB8 horse
           4]
 gi|121601427|ref|YP_993337.1| GMP synthase [Burkholderia mallei SAVP1]
 gi|124385687|ref|YP_001029226.1| GMP synthase [Burkholderia mallei NCTC 10229]
 gi|126439536|ref|YP_001059434.1| GMP synthase [Burkholderia pseudomallei 668]
 gi|126448173|ref|YP_001080843.1| GMP synthase [Burkholderia mallei NCTC 10247]
 gi|126455031|ref|YP_001066714.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 1106a]
 gi|167000587|ref|ZP_02266398.1| GMP synthase [Burkholderia mallei PRL-20]
 gi|167720125|ref|ZP_02403361.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei DM98]
 gi|167830039|ref|ZP_02461510.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 9]
 gi|167846262|ref|ZP_02471770.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei B7210]
 gi|167894841|ref|ZP_02482243.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 7894]
 gi|167903231|ref|ZP_02490436.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei NCTC 13177]
 gi|167919478|ref|ZP_02506569.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei BCC215]
 gi|226200092|ref|ZP_03795638.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           Pakistan 9]
 gi|242315579|ref|ZP_04814595.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1106b]
 gi|254178353|ref|ZP_04885008.1| GMP synthase [Burkholderia mallei ATCC 10399]
 gi|254200114|ref|ZP_04906480.1| GMP synthase [Burkholderia mallei FMH]
 gi|254206452|ref|ZP_04912804.1| GMP synthase [Burkholderia mallei JHU]
 gi|81604845|sp|Q62JF6|GUAA_BURMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738402|sp|A3MKQ7|GUAA_BURM7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738403|sp|A2SBA7|GUAA_BURM9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738404|sp|A1V534|GUAA_BURMS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738405|sp|A3NWJ3|GUAA_BURP0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738406|sp|A3NAR3|GUAA_BURP6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52427131|gb|AAU47724.1| GMP synthase [Burkholderia mallei ATCC 23344]
 gi|121230237|gb|ABM52755.1| GMP synthase [Burkholderia mallei SAVP1]
 gi|124293707|gb|ABN02976.1| GMP synthase [Burkholderia mallei NCTC 10229]
 gi|126219029|gb|ABN82535.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           668]
 gi|126228673|gb|ABN92213.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1106a]
 gi|126241043|gb|ABO04136.1| GMP synthase [Burkholderia mallei NCTC 10247]
 gi|147749710|gb|EDK56784.1| GMP synthase [Burkholderia mallei FMH]
 gi|147753895|gb|EDK60960.1| GMP synthase [Burkholderia mallei JHU]
 gi|160699392|gb|EDP89362.1| GMP synthase [Burkholderia mallei ATCC 10399]
 gi|225927776|gb|EEH23817.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           Pakistan 9]
 gi|238522636|gb|EEP86079.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia mallei GB8 horse
           4]
 gi|242138818|gb|EES25220.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           1106b]
 gi|243063515|gb|EES45701.1| GMP synthase [Burkholderia mallei PRL-20]
          Length = 539

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVADPEHKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|157124722|ref|XP_001654171.1| gmp synthase [Aedes aegypti]
 gi|108882800|gb|EAT47025.1| gmp synthase [Aedes aegypti]
          Length = 684

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V  + +L+ VSGG DS      L + L        +  A+ +D+   R+ 
Sbjct: 218 EECINYIRERVGNSKVLLLVSGGVDSTVCAALLRTALK-----PEQVIAVHIDNGFMRKN 272

Query: 66  AKDEVRYVSDVCSRLRIAH 84
              E   V      L +  
Sbjct: 273 ---ESATVEKSLRELGVDL 288


>gi|312881247|ref|ZP_07741045.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309371139|gb|EFP98593.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 369

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 51/199 (25%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
               ++V +SGG DS      L           +K           E        A +++
Sbjct: 5   SKKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEDYCTAAEDL 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    +++             A  +  R               A +   
Sbjct: 57  ADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLDFA 116

Query: 114 AKTINATLIMTAHT------FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
              + A  I   H         DQ   +  R      ++   L  +    +         
Sbjct: 117 DDVLEADYIAMGHYVRRSCIESDQKPQML-RGLDGNKDQSYFLYTLSHEQIGRS----LF 171

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     + ++R    ++ +
Sbjct: 172 PVGELEKPEVRRIAEEQGL 190


>gi|307721702|ref|YP_003892842.1| GMP synthase (glutamine-hydrolyzing) [Sulfurimonas autotrophica DSM
           16294]
 gi|306979795|gb|ADN09830.1| GMP synthase (glutamine-hydrolyzing) [Sulfurimonas autotrophica DSM
           16294]
          Length = 516

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 69/185 (37%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A +L  +SGG DS  +   L+  + D      +   + VD+  LR+  +++V 
Sbjct: 213 IRERVGDAKVLCGLSGGVDSSVVAAMLYEAIGD------QLIPVFVDNGLLRKGEREQVE 266

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEHAKTI-NATLI 122
            V  +   L+     V   ++        +  E +  +          + AK       +
Sbjct: 267 EVFKI--NLKAPLITVDAVDNFLGKLAGVSDPEQKRKIIGHTFIEEFEKEAKKHDGIKFL 324

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E++ +    +  +    + G+ D + ++    +  P     ++++R    
Sbjct: 325 AQGTLYPDVIESISVNGPSEVIKSHHNVGGLPDWMDFE----LIEPLRELFKDEVRKIGF 380

Query: 183 QRNIS 187
           +  + 
Sbjct: 381 ELGLP 385


>gi|296242518|ref|YP_003650005.1| GMP synthase [Thermosphaera aggregans DSM 11486]
 gi|296095102|gb|ADG91053.1| GMP synthase (glutamine-hydrolyzing) [Thermosphaera aggregans DSM
           11486]
          Length = 521

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 49/191 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETA------------ 66
             ++ AVSGG DS         VL DR    +      VDH L RE              
Sbjct: 226 GPVIAAVSGGVDSTVAAAVARKVLGDRVIPVL------VDHGLFREGEVEEVVEKLSATG 279

Query: 67  ------KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
                  +  R++S +         VV  +  +   G   A       +  +  +   A 
Sbjct: 280 LKPLVLDERERFLSRL-------EGVVDCEERRRIIGEEFA------KVFDQVMEAEGAR 326

Query: 121 LIMTAHTFDDQLET----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           L +   T+ D +E+    V  R +  +   G+          +     ++ P     +++
Sbjct: 327 LFVQGTTYPDIVESGGTVVADRIKSHHNVAGL-------PSWFREKYLVAEPLKHLYKDE 379

Query: 177 IRSFLLQRNIS 187
           +R       + 
Sbjct: 380 VREVARMLGVP 390


>gi|330684948|gb|EGG96627.1| queuosine biosynthesis protein QueC [Staphylococcus epidermidis
          VCU121]
          Length = 223

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L     I+V  SGG DS   L        D          I+ ++  R  A+ EV   
Sbjct: 4  HTLDQNKAIVV-FSGGQDSTTCLFYAKKHFKD-------VILITFNYGQRHDAEIEVA-- 53

Query: 74 SDVCSRLRIAHSVVS 88
            +     + H ++ 
Sbjct: 54 KKIAQEQNVEHHILD 68


>gi|308179905|ref|YP_003924033.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308045396|gb|ADN97939.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 518

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R+ V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+   D+V
Sbjct: 217 IRAEVGDKKVLLGLSGGVDSSVVGVLLHKAI------GTQLTSIFVDHGLLRKGEADQV 269


>gi|296168797|ref|ZP_06850482.1| GMP synthase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295896531|gb|EFG76177.1| GMP synthase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 511

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 67/188 (35%), Gaps = 24/188 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  +   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   +++V+
Sbjct: 203 VREQIGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGEREQVQ 256

Query: 72  --YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTINA----- 119
             +V+   + L  +  +    K     T          R+   A        ++A     
Sbjct: 257 RDFVAATGANLVTVDAADTFLKALSGVTNPEGKRKIIGRQFIRAFEGAVRDILSATGSEV 316

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 317 DFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDLKFKLVEPLRLLFKDEVRA 371

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 372 VGRELGLP 379


>gi|284047421|ref|YP_003397760.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidaminococcus fermentans DSM 20731]
 gi|283951642|gb|ADB46445.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Acidaminococcus fermentans DSM 20731]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 33/130 (25%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----------DEVRY 72
           L+A+SGG DS      +     D     +K             A            +V  
Sbjct: 4   LIAMSGGVDSSVSAKLMQDAGYDCIGCNMKLY-------NNPDAGYCSTKTCCSLSDVED 56

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKT 116
              VC+RL +   V ++        +   AR                  ++  + + A+ 
Sbjct: 57  ARSVCARLGMPFYVFNYTEEFKHDVMEKFARSYTLGHTPNPCIDCNKFLKFGALYQRARE 116

Query: 117 INATLIMTAH 126
           +    ++T H
Sbjct: 117 LGCDCVVTGH 126


>gi|254822979|ref|ZP_05227980.1| GMP synthase [Mycobacterium intracellulare ATCC 13950]
          Length = 514

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 27/197 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++   VR+ +   H +  +SGG DS     A+ + L  R+ G  + + + VDH L RE 
Sbjct: 197 EALVEQVRAQIGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLREG 250

Query: 66  AKDEVR--YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREA-RY--ALISEHAKTI-- 117
            + +V+  +V+   + L  +  +          T      +   R+         + I  
Sbjct: 251 ERAQVQRDFVAATGANLVTVDAADTFLDALAGVTNPEGKRKIIGRHFIRAFEGAVRDIVG 310

Query: 118 -------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                      ++    + D +E+             +        +  DL   +  P  
Sbjct: 311 DNASDGSGVEFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPGDLTFKLVEPLR 365

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 366 LLFKDEVRAVGRELGLP 382


>gi|300767720|ref|ZP_07077630.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300494705|gb|EFK29863.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 521

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R+ V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+   D+V
Sbjct: 220 IRAEVGDKKVLLGLSGGVDSSVVGVLLHKAI------GTQLTSIFVDHGLLRKGEADQV 272


>gi|190571202|ref|YP_001975560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213018602|ref|ZP_03334410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|229487430|sp|B3CLZ0|MNMA_WOLPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|190357474|emb|CAQ54908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995553|gb|EEB56193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 368

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 68/207 (32%), Gaps = 44/207 (21%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD----------EVRY 72
           +VA+SGG DS      L+++  +     ++       +     A+           + +Y
Sbjct: 22  IVAMSGGVDSSVAAALLYNLGYEVIGVTLQL------YGSDGNARKGACCAGQDIYDAKY 75

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-AR---------------YALISEHAKT 116
           V      +   H +++++    +  +   A    R               +  + +  K 
Sbjct: 76  V---AESVGFPHYILNYEEIFKKEVIEDFANTYMRGETPIPCVRCNQTVKFRDLLQVTKN 132

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-PFLRC 172
           + A +++T H     ++  E    RS     ++   L    +       L + R P    
Sbjct: 133 LGADVLVTGHYVRRLEENGEVKLCRSIDKSKDQSYFLFATTEE-----QLKLLRFPLGGF 187

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            + DIR       +   E P + D  F
Sbjct: 188 YKSDIRKLAKYFGLQISEKPDSQDICF 214


>gi|149185387|ref|ZP_01863703.1| exsB protein [Erythrobacter sp. SD-21]
 gi|148830607|gb|EDL49042.1| exsB protein [Erythrobacter sp. SD-21]
          Length = 238

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
          P   +V +SGG DSM       ++  +R        A+++D+  R     E++    +  
Sbjct: 9  PGPAVVLLSGGLDSMV----TAALARERGHA---LHALTIDYGQRHM--RELQSAKSIAE 59

Query: 79 RLRIAHSV 86
          +L +   V
Sbjct: 60 KLGVERHV 67


>gi|33151616|ref|NP_872969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus ducreyi 35000HP]
 gi|71153355|sp|Q7U342|MNMA_HAEDU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33147837|gb|AAP95358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus ducreyi 35000HP]
          Length = 384

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 35/133 (26%), Gaps = 32/133 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
               +++ +SGG DS      L           +K           E        A  ++
Sbjct: 23  KNKKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMK--------NWEEDDDTDYCTAAADL 74

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
               +V  RL I    +++              E +                  A +   
Sbjct: 75  ADAQNVADRLGIKLHKINFAAEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLEYA 134

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 135 AEDLGADYIATGH 147


>gi|28377744|ref|NP_784636.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus plantarum WCFS1]
 gi|254555928|ref|YP_003062345.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus plantarum JDM1]
 gi|38257526|sp|Q88Y74|GUAA_LACPL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28270577|emb|CAD63481.1| GMP synthase (glutamine-hydrolysing) [Lactobacillus plantarum
           WCFS1]
 gi|254044855|gb|ACT61648.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus plantarum JDM1]
          Length = 518

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R+ V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+   D+V
Sbjct: 217 IRAEVGDKKVLLGLSGGVDSSVVGVLLHKAI------GTQLTSIFVDHGLLRKGEADQV 269


>gi|218246420|ref|YP_002371791.1| ExsB family protein [Cyanothece sp. PCC 8801]
 gi|218166898|gb|ACK65635.1| ExsB family protein [Cyanothece sp. PCC 8801]
          Length = 274

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 36/197 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +  V+     +      L+A SGG DS  +    + VL DR+   +  +A+    
Sbjct: 1   MIDQKLNQVKTLFSQMEQA---LIAYSGGIDSTLVAKIAYDVLGDRA---LAITAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQ-----TGLMAAAREARYALISEH 113
               +   +E+       + + I H  + + +   P             +   +  +   
Sbjct: 51  --SPSLLPEELEEAKIQAATIGIKHELIETHEMDNPNYTSNPVNRCYFCKSELHDTLKPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A       I+     DD      ++  R          G+           ++   +   
Sbjct: 109 AIKRGYAYIVDGVNADD------LQDYR---------PGIQAAKERGARSPLAE--VGLT 151

Query: 174 REDIRSFLLQRNISWCE 190
           + +IR    Q  + W +
Sbjct: 152 KTEIRQLSQQLGLPWWD 168


>gi|83591695|ref|YP_425447.1| GMP synthase [Rhodospirillum rubrum ATCC 11170]
 gi|91206825|sp|Q2RXI5|GUAA_RHORT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83574609|gb|ABC21160.1| GMP synthase (glutamine-hydrolyzing) [Rhodospirillum rubrum ATCC
           11170]
          Length = 525

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V    ++  +SGG DS  +   +H  + +      +   + VDH  +R+   ++V 
Sbjct: 220 VREQVGSGRVICGLSGGVDSSVVAALIHEAIGE------QLVCVLVDHGMMRQGETEQV- 272

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTG-------LMAAAREARYALI----SEHAKTINAT 120
            V     R  I    V    S+   G         A  +      I     E  K   A 
Sbjct: 273 -VRVFRDRFNITL--VHRDASELFLGKLDGVVDPEAKRKIIGATFIDVFDEEARKVGGAD 329

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   + + +  P     ++++R  
Sbjct: 330 FLAQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMKMALVEPLRELFKDEVRDL 386

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 387 GRELGLP 393


>gi|312880532|ref|ZP_07740332.1| N-acetyl sugar amidotransferase [Aminomonas paucivorans DSM 12260]
 gi|310783823|gb|EFQ24221.1| N-acetyl sugar amidotransferase [Aminomonas paucivorans DSM 12260]
          Length = 374

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 60/179 (33%), Gaps = 26/179 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DS  +   L           ++  A+ +D+     ++  V+ + ++ ++L I
Sbjct: 70  VIGLSGGVDSSYVAHLLVR-------HGVRPLAVHLDNGW--NSELAVKNIENLVTKLGI 120

Query: 83  AHSVVSWKNSKPQTGLMAAARE-----------ARYALISEHAKTINATLIMTAHTFDDQ 131
                     + +   +A  R            A  AL+   A       ++T    + Q
Sbjct: 121 DLITHVVDWEEFRDLQLAFLRASTPDSEIPSDHAIVALLCRTAVKHRIRFMVTG--RNYQ 178

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            E+      R ++   +    + + +         R F       +  +L    + W +
Sbjct: 179 TES---HLPRRWSSGHLDWKYIRE-LNRRFGGRPLRTFPHVSVLQLSLWLATGRLEWVD 233


>gi|255522399|ref|ZP_05389636.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL
           J1-175]
          Length = 168

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 41/150 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS      L         +         +F   +        A ++   V
Sbjct: 9   RVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDDTDEFGVCT--------ATEDYDDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V +++ I +  V+++                  R          E ++    EHA+++
Sbjct: 61  IRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESL 120

Query: 118 NATLIMTAHTFD-----DQLETVYMRSQRD 142
            A  + T H        D++E       R 
Sbjct: 121 GADYVATGHYAQVKKVGDEIE-----LLRG 145


>gi|149372147|ref|ZP_01891417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [unidentified eubacterium SCB49]
 gi|149354914|gb|EDM43476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [unidentified eubacterium SCB49]
          Length = 418

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 27/131 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHCLRETAKD--EVR 71
               ++V +SGG DS      L     +            ++++ D C      D  +  
Sbjct: 20  KKKRVVVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVTISDEC--PWLDDSNDAM 77

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHAK 115
            V      L I    V       +                       RE ++ +  + A 
Sbjct: 78  LV---AQALDIPFQTVDLSAEYKERIVDYMFREYKMGRTPNPDVLCNREIKFDVFLKIAL 134

Query: 116 TINATLIMTAH 126
            + A  + T H
Sbjct: 135 ELGADFVATGH 145


>gi|89256406|ref|YP_513768.1| GMP synthase [Francisella tularensis subsp. holarctica LVS]
 gi|167010428|ref|ZP_02275359.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella tularensis subsp. holarctica FSC200]
 gi|254367742|ref|ZP_04983763.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           holarctica 257]
 gi|122500707|sp|Q2A3D4|GUAA_FRATH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|89144237|emb|CAJ79510.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253553|gb|EBA52647.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           holarctica 257]
          Length = 516

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 212 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGDQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 266 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIESASNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|262306071|gb|ACY45628.1| gln amidotransferase [Loxothylacus texanus]
          Length = 197

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++RS      +L+ VSGG DS      LH  L     G  +   + +D+   R   KDE 
Sbjct: 36  YIRSATGDHKVLLLVSGGVDSTVCAALLHKAL-----GSDRVITLHIDNGFMR---KDES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V +  S++ +   VV 
Sbjct: 88  KQVQESLSKIGLNLKVVD 105


>gi|207743214|ref|YP_002259606.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) protein [Ralstonia solanacearum
           IPO1609]
 gi|206594611|emb|CAQ61538.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) protein [Ralstonia solanacearum
           IPO1609]
          Length = 547

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 213 MRDHIEEAVKLIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 266

Query: 62  L-RETAKDEVRYVSDVCS-RLR--IAHSVVSWK-------NSKPQTGLMAAAREARYALI 110
           L R     E + V D+   RL   + H+  S +        + P+       RE      
Sbjct: 267 LLRLN---EGQMVLDMFEGRLHAKVVHANASEQFLGHLAGVTDPEAKRKIIGREFVEVFQ 323

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +E  K  NA  +     + D +E+      +      +        +   L L +  P  
Sbjct: 324 AEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPLR 380

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R   +   +  
Sbjct: 381 DLFKDEVRELGVALGLPP 398


>gi|166367576|ref|YP_001659849.1| tRNA-specific 2-thiouridylase MnmA [Microcystis aeruginosa
           NIES-843]
 gi|205816884|sp|B0JVR4|MNMA_MICAN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166089949|dbj|BAG04657.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Microcystis aeruginosa NIES-843]
          Length = 352

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 61/201 (30%), Gaps = 53/201 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
             ++V +SGG DS     ALH+         +   +  G+                  + 
Sbjct: 2   GKVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLMKGKGQCC-----------SEGMVDA 50

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAA-----AREARYAL-----ISEH 113
            +   +C +L + H +V  +    +       +G  A        +   A+     +   
Sbjct: 51  AF---ICEQLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYA 107

Query: 114 AKTINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            +T+    I T H         +++ +   +R+     ++   L  +   +L        
Sbjct: 108 RETLQTDTIATGHYARIRFSPENNRYQ--LLRAVDQNKDQSYFLYDLTQDVLRGT----L 161

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + + R    +  + 
Sbjct: 162 FPLGEQTKAETRRIAQEFGLK 182


>gi|222481023|ref|YP_002567260.1| argininosuccinate synthase [Halorubrum lacusprofundi ATCC 49239]
 gi|222453925|gb|ACM58190.1| argininosuccinate synthase [Halorubrum lacusprofundi ATCC 49239]
          Length = 412

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 56/199 (28%), Gaps = 53/199 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           A + +A SGG D+   +  L        +G  +   ++VD        DE     +    
Sbjct: 2   ATVALAFSGGLDTTVCVPLLKE-----EYGYDEVIGVNVDVGQPTEEFDEAE---ETADA 53

Query: 80  LRIAHSVVSWKNS-------KPQTGL--------MAAAREARYALISEHAKTINATLIMT 124
           L +   VV  K           +T           A AR      I   A+      I  
Sbjct: 54  LGLDLHVVDAKEEFADLCYDAVKTNATYQGYPLGTALARPVIAEAILGVAEEQGCDAI-- 111

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDIRSFL 181
           AH                    G G   +  + +    +L +  P   L   RE    + 
Sbjct: 112 AH-----------------GCTGKGNDQLRFEAVWRGSDLEVIAPVRELGLTREWEIDYA 154

Query: 182 LQRNIS--------WCEDP 192
            ++++         W  D 
Sbjct: 155 AEKDLPVEAGDGGVWSIDE 173


>gi|313157065|gb|EFR56495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alistipes sp. HGB5]
          Length = 438

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 39/198 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H-------CLRETAKDEVR 71
           AH+++ +SGG DS      L     D +          ++ H              D V 
Sbjct: 2   AHVVIGLSGGVDSSVAAYLLKRQGHDVT------GLFMINWHDTTGTLEGDCPWHDDRV- 54

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAK 115
           +   V  RL I   VV                               RE ++ +    A 
Sbjct: 55  FAELVAKRLDIPLRVVDLSADYRTRVVDYMFAEYEKGRTPNPDVLCNREIKFDVFLREAL 114

Query: 116 TINATLIMTAHTFDDQLETVY------MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            + A  + T H    + E V        +              +C      L   +  P 
Sbjct: 115 KLGADFVATGHYCR-KAEEVLPDGRTVFKLLAGADPNKDQSYFLCQLSQEQLRYALF-PI 172

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R    ++ ++
Sbjct: 173 GDLLKPEVRRIAAKQGLA 190


>gi|262282315|ref|ZP_06060083.1| bifunctional GMP synthase/glutamine amidotransferase [Streptococcus
           sp. 2_1_36FAA]
 gi|262261606|gb|EEY80304.1| bifunctional GMP synthase/glutamine amidotransferase [Streptococcus
           sp. 2_1_36FAA]
          Length = 518

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R  V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+V
Sbjct: 217 IRETVGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQV 269


>gi|227831113|ref|YP_002832893.1| exsB protein [Sulfolobus islandicus L.S.2.15]
 gi|227457561|gb|ACP36248.1| exsB protein [Sulfolobus islandicus L.S.2.15]
          Length = 464

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 34/129 (26%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS     A   +L +      + + I  ++   +  + E   V ++   L+
Sbjct: 245 LVVA-SGGLDSTV---AATKLLRE----GHEVTLIHFNYH-HKAEEREREAVRNIAEHLQ 295

Query: 82  IAHSVVS-------------------WKNSKPQTGLMAA-----AREAR-YALISEHAKT 116
           +    ++                    K+ K + G   A     AR    ++     A+ 
Sbjct: 296 VPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGAEFAHEWVPARNLIFFSAALAIAEA 355

Query: 117 INATLIMTA 125
                I + 
Sbjct: 356 YGYDAIASG 364


>gi|160893111|ref|ZP_02073899.1| hypothetical protein CLOL250_00657 [Clostridium sp. L2-50]
 gi|156865194|gb|EDO58625.1| hypothetical protein CLOL250_00657 [Clostridium sp. L2-50]
          Length = 226

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   LL AL            K  A+S D+   +    E+     +  + 
Sbjct: 11 VVV-FSGGQDSTTCLLWALKKYK--------KVYAVSFDYG--QKHIKELECAKKIAEKF 59

Query: 81 RIAHSVVS 88
           + H ++ 
Sbjct: 60 GVEHHILD 67


>gi|117619436|ref|YP_856351.1| exsB protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|167016410|sp|A0KJA0|QUEC_AERHH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|117560843|gb|ABK37791.1| exsB protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 235

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +  AI+ D+  R   ++E+     + S+L
Sbjct: 5   VVV-FSGGQDSTTCLVQALSRYD--------EVHAITFDYGQRH--REEIETARRLASQL 53

Query: 81  RIAHSVVSWKNSKPQTGLMAAARE 104
            IA   V       +  + A  R+
Sbjct: 54  GIAAHKVMDVTMLGELAISALTRD 77


>gi|22299799|ref|NP_683046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermosynechococcus elongatus BP-1]
 gi|30173409|sp|Q8CWM0|MNMA_THEEB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|22295983|dbj|BAC09808.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Thermosynechococcus elongatus BP-1]
          Length = 369

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 64/199 (32%), Gaps = 53/199 (26%)

Query: 22  ILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++V +SGG DS   + +L +         +   +  G+     + VD             
Sbjct: 7   VVVGLSGGVDSSVAIASLKAQGHPVVGLTLWLMKGKGQCCSEGL-VD------------- 52

Query: 73  VSDVCSRLRIAHSVV---------------SWKNSKPQTGLMAAA-REARYA-LISEHAK 115
            + +C +L + H +V               S   +       +   R  ++  +++   +
Sbjct: 53  AARLCEQLGVPHHIVDSREIFEKYIVNYLISGYANGVTPLPCSQCNRLVKFGPMLAYSRE 112

Query: 116 TINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +    I T H          D+ E    R+   + ++   L  +   IL      +  P
Sbjct: 113 QLGIDYIATGHYAQVKYNPTSDRYE--LWRAVDRHKDQSYFLYDLPQEILA----HVLFP 166

Query: 169 FLRCRREDIRSFLLQRNIS 187
             +  + + R+   Q  + 
Sbjct: 167 LGQQTKAETRALAAQYGLP 185


>gi|302348074|ref|YP_003815712.1| NAD+ synthetase [Acidilobus saccharovorans 345-15]
 gi|302328486|gb|ADL18681.1| NAD+ synthetase [Acidilobus saccharovorans 345-15]
          Length = 278

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 34/153 (22%)

Query: 4   SPIESVRFFVRSLVYPAHI---LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             I+++  F++  +  + +   ++ VSGG DS     A     + ++ G  K  A+ +  
Sbjct: 18  KAIDAITSFIKDFLESSSVKGFVIGVSGGVDS-----AATYFAAVKAVGPEKVMALIMH- 71

Query: 61  CLRETAK-------DEVRYVSDVCS-RLRI---------AHSVVSWKNSKPQTGLMAAAR 103
                +        D+ +++ ++   +  I           S +   +      L     
Sbjct: 72  ----DSTVTPKEDVDDAKHLIEIARTQYNIIDIAPIVETYRSTIPVYDPADTVPLGNLRA 127

Query: 104 EARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             R +L+  +A   N  ++ T     D+ E   
Sbjct: 128 RIRMSLLYYYANKFNYAVLGTG----DRSEAFL 156


>gi|260772624|ref|ZP_05881540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio metschnikovii CIP 69.14]
 gi|260611763|gb|EEX36966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio metschnikovii CIP 69.14]
          Length = 372

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 57/202 (28%), Gaps = 41/202 (20%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------A 66
           RS      ++V +SGG DS      L           +K           E        A
Sbjct: 5   RSANSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCTA 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YAL 109
            +++     VC +L I    +++             A  +  R               A 
Sbjct: 57  AEDLADAQAVCDKLGIYLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAF 116

Query: 110 ISEHAKTINATLIMTAH----TFDDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           +    + ++A  I   H    TF  Q E    +R      ++   L  +    +      
Sbjct: 117 LEFADEVLDADYIAMGHYVRRTFPTQGEKPQMLRGLDSNKDQSYFLYTLSHEQVARS--- 173

Query: 165 ISRPFLRCRREDIRSFLLQRNI 186
              P     + ++R    ++ +
Sbjct: 174 -LFPVGELEKPEVRRIAEEQGL 194


>gi|86739358|ref|YP_479758.1| GMP synthase [Frankia sp. CcI3]
 gi|86566220|gb|ABD10029.1| GMP synthase (glutamine-hydrolyzing) [Frankia sp. CcI3]
          Length = 556

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 22/199 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++ ++     VR+ V    ++  +SGG DS      +H  + D        + + VDH 
Sbjct: 235 MINIVDEAVAAVRAQVGTGRLICGLSGGVDSAVAAALVHRAVGD------ALTCVFVDHG 288

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALIS 111
            LR    ++V    D  +   +    V   +           P+       RE    +  
Sbjct: 289 LLRAGEAEQVE--RDFVATTGVDLVHVKAADRFSAALSGVTDPERKRKIIGREF-IRVFE 345

Query: 112 EHAKTINATLIMTAHTFDDQLE-TVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRP 168
           E A+ +         T D  ++ T+Y       +     +        +  DL   +  P
Sbjct: 346 ESARELEVRAEAEGATIDFLVQGTLYPDVIESGSPTAAKIKSHHNVGGLPEDLRFDLVEP 405

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R    +  + 
Sbjct: 406 LRTLFKDEVRRLGEELGLP 424


>gi|56962710|ref|YP_174436.1| GMP synthase [Bacillus clausii KSM-K16]
 gi|81366846|sp|Q5WJI0|GUAA_BACSK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56908948|dbj|BAD63475.1| GMP synthetase [Bacillus clausii KSM-K16]
          Length = 515

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +R  V   H+L A+SGG DS  + + +H  + D      + + + +DH L
Sbjct: 203 NFIEEEIKKIREQVGDRHVLCALSGGVDSSVVAVLIHKAIGD------QLTCMFIDHGL 255


>gi|328676062|gb|AEB28737.1| GMP synthase (glutamine-hydrolyzing) [Francisella cf. novicida
           3523]
          Length = 522

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 218 IKQKVGNDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGDQVM 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 272 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 329

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 330 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 386

Query: 183 QRNISW 188
              + +
Sbjct: 387 GLGLPY 392


>gi|316985540|gb|EFV64487.1| GMP synthase [glutamine-hydrolyzing] [Neisseria meningitidis
           H44/76]
          Length = 330

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 13/90 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR 
Sbjct: 204 IEEAVAKIREQVGSDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRL 257

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK 93
               E + V D     L +   V+      
Sbjct: 258 N---ESKMVMDMFARNLGVK--VIHVDAEG 282


>gi|313893420|ref|ZP_07826992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442061|gb|EFR60481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 353

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 42/194 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY----VSDVC 77
           I VA+SGG DS   L A   +        I             T  DEV         +C
Sbjct: 5   IAVAMSGGVDSS--LTAAMLLKQGYKVFGITLWLWV-----SGTPYDEVPLAVTDAKKMC 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINATL 121
             L I H V+  ++   +  +    +E  Y                 L+   A  + AT 
Sbjct: 58  DFLGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATH 117

Query: 122 IMTAHTFDDQL----ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCR 173
           ++T H    Q+    ET      +               ++Y++N  I      P     
Sbjct: 118 MVTGHYA--QVNFNEETGLYELHKGVDPT-----KDQSYVMYNMNQRILSHLMFPLGGQC 170

Query: 174 REDIRSFLLQRNIS 187
           + + R    + ++ 
Sbjct: 171 KTETRKLAAEYDLP 184


>gi|262277406|ref|ZP_06055199.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [alpha proteobacterium HIMB114]
 gi|262224509|gb|EEY74968.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [alpha proteobacterium HIMB114]
          Length = 520

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
             I+S+R  V+       IL A+SGG DS  L   L   +            + VD
Sbjct: 210 RIIKSIRLSVK---KNEKILCALSGGVDSSVLAHLLLKAVKK------NLVCVYVD 256


>gi|255318486|ref|ZP_05359719.1| ExsB family protein [Acinetobacter radioresistens SK82]
 gi|262378716|ref|ZP_06071873.1| ExsB superfamily [Acinetobacter radioresistens SH164]
 gi|255304478|gb|EET83662.1| ExsB family protein [Acinetobacter radioresistens SK82]
 gi|262300001|gb|EEY87913.1| ExsB superfamily [Acinetobacter radioresistens SH164]
          Length = 201

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 13/79 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +L+ +SGG DS              ++ K    A+++D+  +  AK E+     +C  L 
Sbjct: 4   VLL-LSGGMDSTA-----------IAWWKRPDYALTIDYG-QLAAKAEIAASQSICRYLN 50

Query: 82  IAHSVVSWKNSKPQTGLMA 100
           I H +++       +G MA
Sbjct: 51  IPHEILTVDCRNIGSGDMA 69


>gi|269797937|ref|YP_003311837.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Veillonella parvula DSM 2008]
 gi|282850166|ref|ZP_06259545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella parvula ATCC 17745]
 gi|269094566|gb|ACZ24557.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Veillonella parvula DSM 2008]
 gi|282579659|gb|EFB85063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella parvula ATCC 17745]
          Length = 353

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 38/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY----VSDVC 77
           I VA+SGG DS   L A   +        I             T  DEV         +C
Sbjct: 5   IAVAMSGGVDSS--LTAAMLLKQGYKVFGITLWLWV-----SGTPYDEVPLAVTDAKKMC 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINATL 121
             L I H V+  ++   +  +    +E  Y                 L+   A  + AT 
Sbjct: 58  DFLGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATH 117

Query: 122 IMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRRE 175
           ++T H    +   ET      +               ++Y++N  I      P     + 
Sbjct: 118 MVTGHYAQVNYNEETGLYELHKGVDPT-----KDQSYVMYNMNQRILSHLMFPLGGQCKT 172

Query: 176 DIRSFLLQRNIS 187
           + R    + ++ 
Sbjct: 173 ETRKLAAEYDLP 184


>gi|170760751|ref|YP_001786568.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|205810328|sp|B1KZE1|MNMA1_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|169407740|gb|ACA56151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 77/242 (31%), Gaps = 67/242 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVDHC 61
              +LV +SGG DS      L                      ++  G    SA+     
Sbjct: 2   KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAV----- 56

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAARE----------A 105
                  + R V++   ++ I   V+++K++  +  +          R            
Sbjct: 57  ------ADARRVAN---KIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCITCNKFI 107

Query: 106 RYALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           +++   + A  +    + T H       +D+   +  +S+ D  ++   L  +    L  
Sbjct: 108 KFSSFLDKAMAMGIDYVATGHYAIIEKHNDRY--IIKKSEDDKKDQTYALYNLTQFQLER 165

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVRDI 211
             +    P  + ++  IR    +  +     +D       P N   R+ + R    VR+ 
Sbjct: 166 TLM----PCGQYKKSKIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREG 221

Query: 212 DL 213
           + 
Sbjct: 222 NF 223


>gi|158520983|ref|YP_001528853.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509809|gb|ABW66776.1| GMP synthase, large subunit [Desulfococcus oleovorans Hxd3]
          Length = 509

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 64/186 (34%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  +        + + I VD+  LR   KDE +
Sbjct: 205 IRERVGEKRVILGLSGGVDSSVAALLIHHAIGR------QLTCIFVDNGLLR---KDEAK 255

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEHAKTI-NATL 121
            +      +L++    V+      +     A  E +  +            AK I  A  
Sbjct: 256 KLKAVFAEKLQLNIRFVNAAGRFLKALAGVADPEKKRKIIGKIFMDVFEAEAKKIKGADF 315

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+   +S        +        +   + L +  P     ++++R   
Sbjct: 316 LAQGTLYPDVIES---QSAFGGPTSIIKSHHNVGGLPAKMKLSLIEPLRFLFKDEVRLLG 372

Query: 182 LQRNIS 187
               + 
Sbjct: 373 KTLGLD 378


>gi|58582179|ref|YP_201195.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188576740|ref|YP_001913669.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576931|ref|YP_001913860.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|75435215|sp|Q5GZR1|MNMA_XANOR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829009|sp|B2SMD7|MNMA_XANOP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58426773|gb|AAW75810.1| tRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188521192|gb|ACD59137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521383|gb|ACD59328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 378

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 50/199 (25%), Gaps = 51/199 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
           HI+V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   HIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L +           W           AA           RE ++    + 
Sbjct: 52  RRDAVAVCGVLGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H         +      R  R           +       L   +  P
Sbjct: 112 AQALGAERIATGHYAQVAHRGGR-----WRLLRGADRDKDQSYFLHQLGQSQLAATLF-P 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +  +R       + 
Sbjct: 166 IGDLEKSTLRRIARDAGLP 184


>gi|116748502|ref|YP_845189.1| PP-loop domain-containing protein [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697566|gb|ABK16754.1| PP-loop domain protein [Syntrophobacter fumaroxidans MPOB]
          Length = 276

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 14/130 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
             +R     L     I +A SGG DS  L    H+ L  + F     S           +
Sbjct: 13  AKIRRLSALLAPCDRIGIAFSGGVDSSLLAWFAHAWLKKKVFVFFAESGF--------AS 64

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKTINAT 120
             + R  + V   + +   +V       +       R   +      + I   A      
Sbjct: 65  GSDRRNAARVAEEIGLPLEIVPVDVFSIEALRDNHPRRCYFCKKEMLSRIRMKAAESGCD 124

Query: 121 LIMTAHTFDD 130
           ++       D
Sbjct: 125 ILFDGSHAGD 134


>gi|283780585|ref|YP_003371340.1| GMP synthase, large subunit [Pirellula staleyi DSM 6068]
 gi|283439038|gb|ADB17480.1| GMP synthase, large subunit [Pirellula staleyi DSM 6068]
          Length = 522

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 69/194 (35%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ +  A ++  +SGG DS      L+  +        K S I VD+  LR   KDE  
Sbjct: 218 MRAQIGDARVICGLSGGVDSAVTAALLYRAI------GPKLSCILVDNGLLR---KDEQA 268

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAAREARYALISE----HAKTINATL 121
            V ++  +  +    VV  +    +     T   A  ++  Y  I        K  +A  
Sbjct: 269 GVIAEFTNHFKTDLHVVEGEKRFLEALAGVTEPQAKRKKIGYEFIECFKDEAKKIEDARF 328

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPFLRCRREDI 177
           +     + D +E+         A  G      L      +  +L   +  P     ++++
Sbjct: 329 LAQGTLYPDVIES-------GAAPDGPAATIKLHHNVGGLPAELGFELVEPLRDLFKDEV 381

Query: 178 RSFLLQRNISWCED 191
           R   L+  +   ED
Sbjct: 382 RKLGLELGLP--ED 393


>gi|39995643|ref|NP_951594.1| hypothetical protein GSU0536 [Geobacter sulfurreducens PCA]
 gi|39982406|gb|AAR33867.1| conserved hypothetical protein TIGR00268 [Geobacter sulfurreducens
           PCA]
          Length = 269

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 54/193 (27%), Gaps = 40/193 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++  +R +     +LVA SGG DS  LL   H +L D++      S           +
Sbjct: 9   EQLKAILREM---GSVLVAFSGGVDSTFLLRVAHGLLGDKAVAFTATSPTY------PES 59

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-------LISEHAKTINA 119
             E R    +   +  A  VV   N     G     R   Y        L    A  +  
Sbjct: 60  --EFREAVGLARSMG-ARQVVVESNELEIPGFAFNPRNRCYHCKKELFGLCGRTAAELGL 116

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDI 177
             +      DD                   L            L +  P +     + DI
Sbjct: 117 AWVADGSNCDD-------------------LDDYRPGRAAAGELGVRSPLVEAGLTKADI 157

Query: 178 RSFLLQRNISWCE 190
           R    +  +   +
Sbjct: 158 RELSRELGLPTWD 170


>gi|86132339|ref|ZP_01050934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dokdonia donghaensis MED134]
 gi|85817258|gb|EAQ38441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dokdonia donghaensis MED134]
          Length = 397

 Score = 46.1 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 27/127 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD---RSFGKIKFSAISV-DHCLRETAKD--EVRYVSD 75
           ++V +SGG DS      L     +            ++++ D C      D  +   V  
Sbjct: 4   VVVGLSGGVDSSVTAYLLKEQGYNVIGLFMKNWHDDSVTISDEC--PWLDDSNDAMLV-- 59

Query: 76  VCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAKTINA 119
              +L I    V       +                       RE ++ +  + A ++ A
Sbjct: 60  -AEKLGIPFQTVDLSEQYQERIVDYMFREYEMGRTPNPDVLCNREIKFDVFMKIALSLGA 118

Query: 120 TLIMTAH 126
             + T H
Sbjct: 119 DYVATGH 125


>gi|312199971|ref|YP_004020032.1| GMP synthase, large subunit [Frankia sp. EuI1c]
 gi|311231307|gb|ADP84162.1| GMP synthase, large subunit [Frankia sp. EuI1c]
          Length = 571

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 62/207 (29%), Gaps = 38/207 (18%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++ ++     VR+ V  A ++  +SGG DS     A+   L  R+ G    + + VDH 
Sbjct: 250 MVNIVDEAVAAVRAQVGGARLICGLSGGVDS-----AVAGALVQRAVGD-ALTCVFVDHG 303

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG--------------------LMA 100
            LR    ++V    D  +   +    +   +                             
Sbjct: 304 LLRAGEAEQVE--RDFVASTGVELVHIKAADRFAAALAGVTDPEQKRKIIGREFIRVFEE 361

Query: 101 AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           AAR+         A       ++    + D +E              +        +  D
Sbjct: 362 AARDLEARA---EAAGSRIEYLVQGTLYPDVIE------SGSPDAAKIKSHHNVGGLPDD 412

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
           L   +  P     ++++R    +  + 
Sbjct: 413 LQFGLVEPLRTLFKDEVRRLGEELGLP 439


>gi|292493716|ref|YP_003529155.1| GMP synthase, large subunit [Nitrosococcus halophilus Nc4]
 gi|291582311|gb|ADE16768.1| GMP synthase, large subunit [Nitrosococcus halophilus Nc4]
          Length = 524

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V    +L+ +SGG DS      LH  + +      +   + VD+  LR   A   +
Sbjct: 220 IRGKVGTDTVLLGLSGGVDSSVAAALLHKAIGN------QLICVFVDNGLLRLGEADQVM 273

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEHAKTINA 119
              +     L I   V+                 P+       R          A+  N 
Sbjct: 274 ---ATFARHLGIK--VIRIDAESRFLEALAGVVDPEAKRKIIGRVFIEVFEEAAAELPNV 328

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +    + +        +  +LNL +  P     ++++R 
Sbjct: 329 QWLAQGTIYPDVIES---AGGKTGKAQVIKSHHNVGGLPEELNLKLLEPLRELFKDEVRH 385

Query: 180 FLLQRNISW 188
              +  + +
Sbjct: 386 LGTELGLPF 394


>gi|257458053|ref|ZP_05623212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema vincentii ATCC 35580]
 gi|257444766|gb|EEV19850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema vincentii ATCC 35580]
          Length = 358

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 54/190 (28%), Gaps = 33/190 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKDEVRYVSDV 76
            I V +SGG DS  +   L           +    ++    V    +E ++  +   +  
Sbjct: 2   KIAVGLSGGVDSTVVAKLLME--QGHEVCGVTLRVLNEKNPVA---KEQSERIIGEAAQA 56

Query: 77  CSRLRIAHSVVSWKNS---------------KPQTGLMAAA-REARYALISEHAKTINAT 120
              L I H V  ++                            ++ ++ L+ E A      
Sbjct: 57  ARILGIPHRVYDFRAEFQTHIIDYFIQSYCNGETPNPCYICNKQIKFGLLLERALQEGCD 116

Query: 121 LIMTAHTFDDQLET----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            + T H      E+    V  R      ++   L+ +    L         P     + +
Sbjct: 117 AVATGHYAKVFQESSGRYVLERGVDAQKDQSYFLALLSQEQLSRT----LFPLAELTKPE 172

Query: 177 IRSFLLQRNI 186
           +R    +  +
Sbjct: 173 VRLIAEKAGL 182


>gi|153953103|ref|YP_001393868.1| GMP synthase [Clostridium kluyveri DSM 555]
 gi|219853754|ref|YP_002470876.1| hypothetical protein CKR_0411 [Clostridium kluyveri NBRC 12016]
 gi|226738426|sp|A5N5D9|GUAA_CLOK5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800093|sp|B9DYY7|GUAA_CLOK1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|146345984|gb|EDK32520.1| GuaA [Clostridium kluyveri DSM 555]
 gi|219567478|dbj|BAH05462.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 510

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 64/189 (33%), Gaps = 30/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++ A+SGG DS    + +H  +        + + I VDH  LR+   D+V 
Sbjct: 209 IKEEVGDKKVICAMSGGVDSSVAAMIVHKAVGK------QLTCIFVDHGLLRKDEGDQVE 262

Query: 72  ----------YVSDVCSRLRI-AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-A 119
                     ++     +  +     +S    K +       R     +  E AK +   
Sbjct: 263 DIFKKQFNMNFIRVNAEKRFLQKLKDISDPEKKRKIIGEEFIR-----VFEEEAKKLGEI 317

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  D++  +  P     ++++R+
Sbjct: 318 AFLVQGTIYPDVVESGL------GTSATIKSHHNVGGLPEDMDFKLIEPLRELFKDEVRA 371

Query: 180 FLLQRNISW 188
              +  I  
Sbjct: 372 VGEELGIPH 380


>gi|312140823|ref|YP_004008159.1| gmp synthase [Rhodococcus equi 103S]
 gi|325675540|ref|ZP_08155224.1| GMP synthase [Rhodococcus equi ATCC 33707]
 gi|311890162|emb|CBH49480.1| GMP synthase [Rhodococcus equi 103S]
 gi|325553511|gb|EGD23189.1| GMP synthase [Rhodococcus equi ATCC 33707]
          Length = 525

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 73/203 (35%), Gaps = 37/203 (18%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE VR      V     +  +SGG DS     A+ + L  R+ G  + + + VDH L 
Sbjct: 209 SLIEQVR----EQVGDGKAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLM 258

Query: 63  RETAKDEVR--YVSDVCSRL---RIAHSVVSWKN--SKPQTGLMAAAREARYALISEHAK 115
           R   + +V   +V+   +RL     + + +      S P+T      RE   +     ++
Sbjct: 259 RAGERQQVEKDFVAATGARLITVDASETFLRELAGVSDPETKRKIIGREFIRSFEGAVSE 318

Query: 116 TINATLIMTAH--TFD---------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            +  +    AH  T D         D +E+             +        +  DL   
Sbjct: 319 VLGESA---AHGETVDFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLQFK 370

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++R+   +  + 
Sbjct: 371 LVEPLRLLFKDEVRAVGRELGLP 393


>gi|260642609|ref|ZP_05416575.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
 gi|260621349|gb|EEX44220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides finegoldii DSM 17565]
          Length = 365

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 32/186 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS     A+  +        I F    ++      + + +     +  R
Sbjct: 6   RRVLLGMSGGTDSSV--AAMRLLEGGYEVTGITFRFYELN-----DSTEYLEDARSLAER 58

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIM 123
           L I H     ++   +  +          R            ++ L+++ A  +    I 
Sbjct: 59  LGIRHITYDARDVFRKQIIEYFVQEYMEGRTPVPCTLCNNCLKWPLLAKVADEMGIFYIA 118

Query: 124 TAHTFDDQLE---TVYM-RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           T H    ++E   T Y+  +     ++   L G+   IL      I  P     + + R 
Sbjct: 119 TGHYVQ-KVELEGTYYITHAADPDKDQSFFLWGLKQDILRR----ILLPMGNITKVEARV 173

Query: 180 FLLQRN 185
           +  +R 
Sbjct: 174 WAAERG 179


>gi|326804082|ref|YP_004321900.1| TIGR00268 family protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650049|gb|AEA00232.1| TIGR00268 family protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 264

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 88/282 (31%), Gaps = 60/282 (21%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    ++ +   ++ +     + VA SGG DS      L   L+ +  GK    AI +  
Sbjct: 1   MEQKKLQQLENLLKEM---GQVCVAFSGGVDST-----LLLYLARKLLGKENTLAIIIQS 52

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSW---KNSKPQTGLMAAAREAR---YALISEHA 114
            L   A D+      +   + +   ++     ++ + Q         ++   Y  + E A
Sbjct: 53  DLVSEADDQEALA--LAQAMDVESQLIPVNELEDPRIQKNDENIWYYSKLLFYQAVQEAA 110

Query: 115 KTINATLIMT-AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
              N   ++      DD      +   R          G+     +D+   +        
Sbjct: 111 MAQNKDYVLVDGMIVDD------LNDYR---------PGLKARKEFDIKSPLI--LCDFT 153

Query: 174 REDIRSFLLQRNISWCEDPS--------------NTDDRFERVRVRRFVRDIDLHALYLK 219
           +ED+R    +  IS     S              N D+          V+ I     Y++
Sbjct: 154 KEDVRQLAKKEGISNWNRSSGCSVISRFPTGTSLNQDN----------VQQILASEAYMR 203

Query: 220 MKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDS 261
            K F  +RV+  N +A L  +              +IL    
Sbjct: 204 QKGFDPVRVRYYNELAKL--ELSPDQFEQFFREKDEILAQFK 243


>gi|284928867|ref|YP_003421389.1| GMP synthase [cyanobacterium UCYN-A]
 gi|284809326|gb|ADB95031.1| GMP synthase (glutamine-hydrolyzing) [cyanobacterium UCYN-A]
          Length = 544

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45
           +R  V    +L+A+SGG DS  L   LH  + D
Sbjct: 234 IRKKVKDRKVLLALSGGVDSSTLAFLLHQAIGD 266


>gi|226356219|ref|YP_002785959.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus deserti VCD115]
 gi|226318209|gb|ACO46205.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus deserti VCD115]
          Length = 391

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 58/197 (29%), Gaps = 36/197 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
                +L A+SGG DS      L       V +   F        + D C    A  E R
Sbjct: 16  PQGERVLCAMSGGVDSSVTAALLKDQGYQVVGAMMRFWPDDKRVDTFDTCCSPDAAYEAR 75

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAR------------EARYALISEHAK 115
            V     ++ +   ++     ++       L   AR            + ++  + + AK
Sbjct: 76  RV---AEQVGVPFYLLDYREQFQRHIVGPFLDEYARGRTPNPCVNCNTKVKFDELVKKAK 132

Query: 116 TINATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +    + T H          ++E       R    +      +  T   D   +I  P 
Sbjct: 133 MLGCRYVATGHYVKRVENAAGEVE-----FWRGDDPRKDQTYFLWGT-PRDALPYILFPV 186

Query: 170 LRCRREDIRSFLLQRNI 186
               +  +R    +R +
Sbjct: 187 GELEKPQVRQIAEERGL 203


>gi|159030575|emb|CAO88238.1| guaA [Microcystis aeruginosa PCC 7806]
          Length = 541

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           ES+R  +R+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 226 ESIRE-IRAKVGDKRVLLALSGGVDSSTLAFLLHRAIGDQ 264


>gi|87123303|ref|ZP_01079154.1| GMP synthase [Synechococcus sp. RS9917]
 gi|86169023|gb|EAQ70279.1| GMP synthase [Synechococcus sp. RS9917]
          Length = 528

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E+VR  VR  V    +L+A+SGG DS  L   L   + D+
Sbjct: 213 EAVRL-VREQVGEKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|299531933|ref|ZP_07045333.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44]
 gi|298720108|gb|EFI61065.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44]
          Length = 376

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 44/202 (21%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L     +     +K               D+  Y   
Sbjct: 1   MSNKQRVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNW----------EDDDDSEYCSS 50

Query: 74  -------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALI 110
                  + V   + I    V++             RE +                    
Sbjct: 51  NIDFVDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAF 110

Query: 111 SEHAKTINATLIMTAH----TFDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            +HA  + A  I T H      +   +    ++   +  ++   L  +    L       
Sbjct: 111 LDHAMRLGAEKIATGHYARVRQNPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMF-- 168

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     + ++R    +  + 
Sbjct: 169 --PVGELHKTEVRRIAEEIGLP 188


>gi|302536332|ref|ZP_07288674.1| GMP synthase [Streptomyces sp. C]
 gi|302445227|gb|EFL17043.1| GMP synthase [Streptomyces sp. C]
          Length = 530

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 28/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E     +++ V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 213 NIVEEQIAAIKAQVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 266

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---- 109
           R+   ++V    D  +   +   VV  +          S P+T      RE         
Sbjct: 267 RKGETEQVE--KDFVAATGVQLKVVDAQERFLTALAGVSDPETKRKIIGREFIRVFEQAQ 324

Query: 110 ISEHAKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +    +   A   +   T   D +E+             +        +  D+   +  P
Sbjct: 325 LEILQEDGPAVAFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDIEFELVEP 379

Query: 169 FLRCRREDIRSFLLQRNIS 187
             +  ++++R    +  + 
Sbjct: 380 LRQLFKDEVRMVGQELGLP 398


>gi|304317430|ref|YP_003852575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778932|gb|ADL69491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 372

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 36/192 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS    + L     D     +K           E        A ++   V
Sbjct: 9   KVVVGMSGGVDSSVSALLLKEQGYDVVGIFMK--------NWDEEDDSGYCTAAEDYEDV 60

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
             VC ++ I +  +++      +     +   R  R             +    + +  I
Sbjct: 61  VRVCDKIGIPYYSINFTQEYWDRVFKYFLDEYRSGRTPNPDVMCNKEIKFKAFLDFSLKI 120

Query: 118 NATLIMTAHTFDDQLE--TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  I T H    ++E      R  +   +       +C+     L+  I  P     + 
Sbjct: 121 GADYIATGHYA--RIEYSNGKYRMLKGVDKNKDQTYFLCELGQKQLSKTIF-PIGHLNKF 177

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 178 EVREIARKAGLK 189


>gi|62484872|emb|CAI78889.1| gmp synthase [uncultured bacterium]
          Length = 517

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 27/197 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---R 63
           +SV    + +     ++  +SGG DS  +   LH  + DR         I VD+ L   R
Sbjct: 205 DSVETTRQRVGPDERVICGLSGGVDSSVVAALLHRAIGDR------LVCIFVDNGLLRRR 258

Query: 64  ETAKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREARYALIS----EHAKTIN 118
           E    E  +      +LR +                    R   +  I     E  +   
Sbjct: 259 EAELVEATFHGHFGMQLRAVDARQRFLTRLAGVVDPQEKRRIIGHEFIEVFKDEATRIEG 318

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRR 174
           A  +     + D +E+        +   G             +  +L   +  P     +
Sbjct: 319 ARFLAQGTIYPDVIES-------GHGPTGHAAVIKSHHNVGALPKELGFELIEPLRLLFK 371

Query: 175 EDIRSFLLQRNISWCED 191
           +++R   L   +   ED
Sbjct: 372 DEVRQVGLALGLP--ED 386


>gi|58698498|ref|ZP_00373403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630917|ref|YP_002727708.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia sp. wRi]
 gi|254811470|sp|C0R4S5|MNMA_WOLWR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|58534992|gb|EAL59086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225592898|gb|ACN95917.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia sp. wRi]
          Length = 370

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 30/207 (14%)

Query: 18  YPAHI--LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRY 72
            P  I  +VA+SGG DS      LH++        ++      +   R+    A  ++  
Sbjct: 15  APHQIKAIVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNANARKGACCAGQDIYD 74

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE-AR---------------YALISEHAKT 116
              V   +   H +++++    +  +   A    R               +  + +  K 
Sbjct: 75  AKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVTKN 134

Query: 117 INATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-PFLRC 172
           + A +++T H     +   E    RS     ++   L            L + R P    
Sbjct: 135 LGADVLVTGHYVRRLEKNGEVKLCRSIDKSKDQSYFLFATTQE-----QLKLLRFPLGGF 189

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRF 199
            + DIR      ++   E P + D  F
Sbjct: 190 YKSDIRKLAKYFSLQISEKPDSQDICF 216


>gi|326336750|ref|ZP_08202918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691220|gb|EGD33191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 396

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 35/135 (25%), Gaps = 39/135 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA------------K 67
             ++V +SGG DS      L     +     +K           + +             
Sbjct: 2   KRVVVGLSGGVDSSVAAYLLQREGYEVIGIFMK--------NWHDDSVTISNECPWLEDS 53

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALIS 111
           ++   V     +L I    V       Q                       RE ++A   
Sbjct: 54  NDALMV---AEKLGIPFQTVDMSEPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFL 110

Query: 112 EHAKTINATLIMTAH 126
           E A  + A  + T H
Sbjct: 111 ELALNLGADYVATGH 125


>gi|325182303|emb|CCA16757.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 525

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 24/191 (12%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAK 67
           ++    ++    H++ AVSGG DS    + L   L DR      F A+ +D+  LRE   
Sbjct: 218 IKQVQETVGPTGHVIGAVSGGVDSSVAAVLLQRALGDR------FHAVLIDNGLLRE--- 268

Query: 68  DEVRY-VSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTI 117
           DE  + V  +  +++I    ++  +           P+                E  +  
Sbjct: 269 DEAIHVVKRLKDKMKINLHCINASDRFLTALKGVTDPEKKRKTIGNLFIEIFQEEAIRLG 328

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   ++    + D +E+V  +      +    + G+ +     ++L +  P     ++++
Sbjct: 329 NIQFLLQGTLYPDVIESVSYKGPSATIKTHHNVGGLPEK----MHLKLIEPLRELFKDEV 384

Query: 178 RSFLLQRNISW 188
           R   +   I  
Sbjct: 385 RELGVALGIDH 395


>gi|312193993|ref|YP_004014054.1| haloacid dehalogenase domain protein hydrolase [Frankia sp. EuI1c]
 gi|311225329|gb|ADP78184.1| haloacid dehalogenase domain protein hydrolase [Frankia sp. EuI1c]
          Length = 471

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 23/122 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSD 75
             +LVA SGG+DS  LL       + R+ G     A +        +      E+     
Sbjct: 219 GSVLVAFSGGADSAFLL-----AWAARTLGPGAVVAAT------AVSPSLPAAELDAARA 267

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKTINATLIMTAHTF 128
             + L + H V+   + + + G +A   +  Y         +   A  +    ++T    
Sbjct: 268 FVAALGVRH-VLPSTDEQSRPGYLANGADRCYFCKAELTETLGPLAADLGLAHVVTGTNA 326

Query: 129 DD 130
           DD
Sbjct: 327 DD 328


>gi|260579165|ref|ZP_05847056.1| GMP synthase [Corynebacterium jeikeium ATCC 43734]
 gi|258602711|gb|EEW15997.1| GMP synthase [Corynebacterium jeikeium ATCC 43734]
          Length = 513

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 73/197 (37%), Gaps = 29/197 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE VR     +      + A+SGG DS     A+ + L  R+ G  + + + VDH  LR 
Sbjct: 199 IEQVR---EQIGDEGRAICALSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRA 249

Query: 65  TAKDEVR--YVSDVCSRL-----------RIAHSVV-SWKNSKPQTGLMAAAREARYALI 110
             +++V   +V+   ++L           ++A       K      G + +   A   ++
Sbjct: 250 GEREQVEKDFVAATGAKLVTVDEREAFLQKLAGVTEPEAKRKAIGAGFIRSFERAVAGVL 309

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           ++  +  +   ++    + D +E+             +        +  D+   +  P  
Sbjct: 310 ADAPEGSSVDFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDVEFKLVEPLR 364

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 365 LLFKDEVRAVGRELGLP 381


>gi|166364457|ref|YP_001656730.1| GMP synthase [Microcystis aeruginosa NIES-843]
 gi|166086830|dbj|BAG01538.1| GMP synthetase [Microcystis aeruginosa NIES-843]
          Length = 541

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           ES+R  +R+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 226 ESIRE-IRAKVGDKRVLLALSGGVDSSTLAFLLHRAIGDQ 264


>gi|16331412|ref|NP_442140.1| GMP synthase [Synechocystis sp. PCC 6803]
 gi|1346218|sp|P49057|GUAA_SYNY3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|1001583|dbj|BAA10210.1| GMP synthetase [Synechocystis sp. PCC 6803]
          Length = 542

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45
           ES+R  VRS V    +L+A+SGG DS  L   LH  + D
Sbjct: 227 ESIRE-VRSQVGDRRVLLALSGGVDSSTLAFLLHRAIGD 264


>gi|310816020|ref|YP_003963984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ketogulonicigenium vulgare Y25]
 gi|308754755|gb|ADO42684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ketogulonicigenium vulgare Y25]
          Length = 379

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 65/218 (29%), Gaps = 52/218 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
           V    ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 16  VAETRVVVAMSGGVDSSVVAAQLKREGYDVVGVTLQLY----DHG--AALAKKGACCAGR 69

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V   +   H V+ ++N+  +  +   A                   ++  + +
Sbjct: 70  DIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFKDLLQ 129

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLN 162
            AK ++A  + T H             QR   +    L    D              +  
Sbjct: 130 TAKDLDADCMATGH-----------YIQRKMGDYAPELHSAADPNRDQSYFLFSTTPEQL 178

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
            ++  P      + + R+   +  +   + P + D  F
Sbjct: 179 AYLRFPLGHLKSKAETRALAAEFGLGVADKPDSQDICF 216


>gi|260433794|ref|ZP_05787765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417622|gb|EEX10881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 381

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 61/222 (27%), Gaps = 54/222 (24%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLY----DHG--AALAKKGACCAGI 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--------------REARYAL--ISE 112
           ++     V       H V+ ++N      +   A               + R     + E
Sbjct: 72  DIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCKERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
            AK + A  + T H             QR     G  L    +    D + ++       
Sbjct: 132 TAKDLEADCMATGH-----------YIQRKMGPNGPELHC-AEDANRDQSYFLFSTTPEQ 179

Query: 168 ------PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 P      ++  R    Q  +S  + P + D  F   
Sbjct: 180 LEFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPN 221


>gi|169334910|ref|ZP_02862103.1| hypothetical protein ANASTE_01316 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257648|gb|EDS71614.1| hypothetical protein ANASTE_01316 [Anaerofustis stercorihominis DSM
           17244]
          Length = 248

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 36/182 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             + +A SGG DS  LL  L  +  + +   +K          +     E++    + ++
Sbjct: 11  KKVALAFSGGVDSSYLLYILKKLNIESTAYFVKSE-------FQP--DFELKESITLATK 61

Query: 80  LRIAHSVVS---WKNSKPQTGLMAAAREARYALISEH---AKTINATLIMTAHTFDDQLE 133
           L     ++        K  T   +     +  + S     AK     +I+      D   
Sbjct: 62  LGADLKIIDNPILNEEKIITNDSSRCYYCKQNIFSHIIKTAKQDGYNIIIDGTNATD--- 118

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCED 191
                   D  ++  G+  + +         I  P       ++DIR+   +  +   + 
Sbjct: 119 --------DEGDRP-GMKALKEM-------KILSPLKICSLTKQDIRTLSKEAGLPTWDK 162

Query: 192 PS 193
           PS
Sbjct: 163 PS 164


>gi|17546150|ref|NP_519552.1| bifunctional GMP synthase/glutamine amidotransferase [Ralstonia
           solanacearum GMI1000]
 gi|44887970|sp|Q8XZG4|GUAA_RALSO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|17428446|emb|CAD15133.1| probable gmp synthase [glutamine-hydrolyzing]
           (glutamineamidotransferase) (gmp synthetase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 547

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 213 MRDHIEEAVKSIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 266

Query: 62  L 62
           L
Sbjct: 267 L 267


>gi|254412279|ref|ZP_05026054.1| conserved hypothetical protein TIGR00268 [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181245|gb|EDX76234.1| conserved hypothetical protein TIGR00268 [Microcoleus
           chthonoplastes PCC 7420]
          Length = 274

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 58/201 (28%), Gaps = 44/201 (21%)

Query: 1   MFLSPIESV-RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M  +  E + R F +        L+A SGG DS  +    + VL DR+       A++  
Sbjct: 1   MLNNKFEQLTRLFAQM----DRALIAYSGGVDSTLVAKIAYDVLGDRAL------AVT-- 48

Query: 60  HCLRETA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYAL 109
                 +     +E+       + + I H +V          +          +   +  
Sbjct: 49  ----AESPSLLPEELEDARIQAAVIGIPHELVQTDEMNNPNYTANPVNRCYFCKSELHDT 104

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A       ++     DD                G    G+           ++   
Sbjct: 105 LKPLALQRGYPYVVDGVNADDL---------------GDYRPGIQAAQERGARSPLAE-- 147

Query: 170 LRCRREDIRSFLLQRNISWCE 190
           +   + ++R    Q  + W +
Sbjct: 148 VGVTKAEVRQLSQQLGLPWWD 168


>gi|119953460|ref|YP_945669.1| tRNA-specific 2-thiouridylase MnmA [Borrelia turicatae 91E135]
 gi|254811445|sp|A1R0A7|MNMA_BORT9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119862231|gb|AAX17999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia turicatae 91E135]
          Length = 354

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 42/196 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI---------SVDHCLRETAKDEVR 71
            I V +SGG DS   L  +      + +  IK   +          +  C     K+++ 
Sbjct: 2   QIAVLLSGGVDSSVALYIMI----QKGYKNIKCYYLKIWLEDELSYIGEC--PW-KEDIN 54

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA--------------RYALISEHAK-T 116
           YV  VC +  + + ++S ++   +  +  A  E               R    +   K  
Sbjct: 55  YVEAVCKKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKIN 114

Query: 117 INATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            +  LI+T H       +D    +  +++    ++   LS +    +  L+     P   
Sbjct: 115 EHYDLIVTGHYAKIENKNDHY--ILKQAKDKIKDQSYFLSHLSRKQISKLHF----PLGD 168

Query: 172 CRREDIRSFLLQRNIS 187
             + +IR    + ++ 
Sbjct: 169 LLKTEIRQIAQKIDLP 184


>gi|86150584|ref|ZP_01068807.1| GMP synthase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596187|ref|ZP_01099424.1| GMP synthase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562860|ref|YP_002344639.1| GMP synthase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|13627146|sp|Q9PN49|GUAA_CAMJE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|85838935|gb|EAQ56201.1| GMP synthase [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191028|gb|EAQ95000.1| GMP synthase [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360566|emb|CAL35363.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926473|gb|ADC28825.1| GMP synthase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927127|gb|EFV06478.1| GMP synthase [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 511

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 23/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGNDKVLCAVSGGVDSSVVAALLASAIKE------QIIVVFVDNGLLRSGEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           ++    + L I    +             + P+                E  K  +   +
Sbjct: 263 FMFK--NTLGIDLISIDASEIFLSRLVNVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYL 320

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+  + + +               +   +NL +  P     ++++R+  L
Sbjct: 321 AQGTLYTDIIESSVVGASKTIKS-----HHNVGGLPEKMNLKLIEPLKEIFKDEVRALGL 375

Query: 183 QRNIS 187
           +  +S
Sbjct: 376 ELGLS 380


>gi|307243697|ref|ZP_07525837.1| GMP synthase (glutamine-hydrolyzing) [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492906|gb|EFM64919.1| GMP synthase (glutamine-hydrolyzing) [Peptostreptococcus stomatis
           DSM 17678]
          Length = 511

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ V     L A+SGG DS      +H  + D        + + VDH  LR+   D+V 
Sbjct: 209 IKAKVGDKKALCALSGGVDSSVAAALMHRAIGD------NLTCVFVDHGLLRKNEGDDVE 262


>gi|317049125|ref|YP_004116773.1| GMP synthase large subunit [Pantoea sp. At-9b]
 gi|316950742|gb|ADU70217.1| GMP synthase, large subunit [Pantoea sp. At-9b]
          Length = 526

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 60/207 (28%), Gaps = 45/207 (21%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS---------------- 47
             IE     +R  V    +++ +SGG DS    + LH  + DR                 
Sbjct: 213 KIIEDAVERIREQVGEDKVILGLSGGVDSSVTAMLLHRAIGDRLTCVFVDNGLLRLNEAE 272

Query: 48  ------FGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA 101
                       + + V          E R++  +               + P+      
Sbjct: 273 QVLEMFGDHFGLNIVHV--------AAEARFLEALAGE------------NDPEAKRKII 312

Query: 102 AREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
            R        E  K  +   +     + D +E+    + + +  K          +  ++
Sbjct: 313 GRVFVEVFDEEAGKLTDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEM 369

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISW 188
            L +  P     ++++R   L+  + +
Sbjct: 370 KLGLVEPLKELFKDEVRKIGLELGLPY 396


>gi|256059943|ref|ZP_05450128.1| exsB protein [Brucella neotomae 5K33]
 gi|261323915|ref|ZP_05963112.1| queuosine biosynthesis protein queC [Brucella neotomae 5K33]
 gi|261299895|gb|EEY03392.1| queuosine biosynthesis protein queC [Brucella neotomae 5K33]
          Length = 232

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H + ++     +    +S D+  R   K E+ +      RL + H 
Sbjct: 7  CSGGLDSVSLT---HKMAAEHELTGL----LSFDYGQRH--KKELDFAQACAKRLGVPHQ 57

Query: 86 VVSWK 90
          ++  +
Sbjct: 58 IIDIR 62


>gi|187929757|ref|YP_001900244.1| sulfate adenylyltransferase subunit 2 [Ralstonia pickettii 12J]
 gi|309781527|ref|ZP_07676263.1| sulfate adenylyltransferase, small subunit [Ralstonia sp.
           5_7_47FAA]
 gi|187726647|gb|ACD27812.1| sulfate adenylyltransferase, small subunit [Ralstonia pickettii
           12J]
 gi|308919940|gb|EFP65601.1| sulfate adenylyltransferase, small subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 316

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H   E        V+ + +RL +
Sbjct: 45  FSGGKDSIVMLHLALKAFRLGERKIELPFPLVHIDTGHNYPEVITFRDEQVAKLGARLVV 104

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  ++     +M     D
Sbjct: 105 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIESHGFDALMGGARRD 152


>gi|39973869|ref|XP_368325.1| hypothetical protein MGG_00919 [Magnaporthe oryzae 70-15]
 gi|145018133|gb|EDK02412.1| hypothetical protein MGG_00919 [Magnaporthe oryzae 70-15]
          Length = 543

 Score = 46.1 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 31/208 (14%)

Query: 2   FLSPIESVRFFVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             + IE     +R+L+   A ++ AVSGG DS      +   + DR      F A+ VD 
Sbjct: 214 MHNFIEQEISRIRNLIGDKAQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDQ 267

Query: 61  C-LRETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTG-----------LM 99
             +R     EV+    +   L I  +V                P+               
Sbjct: 268 GVMRHNECAEVK--KALQDHLGINLTVADASERFLSGLKGVEDPEQKRKFIGNTFIDIFE 325

Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
             A +                  +    + D +E++  +      +    + G+   ++ 
Sbjct: 326 EEAIKIE-KAAENTPNAGKVEWFLQGTLYPDVIESISFKGPSATIKTHHNVGGLPKRMME 384

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS 187
              L +  P     ++++R+   +  I+
Sbjct: 385 GQGLRLIEPLRELFKDEVRAMGRELKIN 412


>gi|304439506|ref|ZP_07399414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372014|gb|EFM25612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 355

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 42/197 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHS--------VLSDRSFGKIKFSAISVDHCLRETAKDE 69
               +++ +SGG DS      L           + +      + +A            D+
Sbjct: 4   KKRTVVLGISGGVDSSVAAYLLKEQGYNVIGVFMKNWDENDEECTA-----------TDD 52

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEH 113
              V  V + L I +  V+++     T            R            ++    + 
Sbjct: 53  YLDVVKVANALDIKYYTVNFEKEYWDTVFTYFLNEYKKGRTPNPDVMCNQNIKFKAFLDF 112

Query: 114 AKTINATLIMTAHTFDDQLE---TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A  + A  I   H    + E   +  +R   +  ++   LS + +  L         P  
Sbjct: 113 ALKLGADYIAMGHYARVKHENGHSYLLRGVDENKDQSYFLSRVKEEALKKT----IFPIG 168

Query: 171 RCRREDIRSFLLQRNIS 187
             ++E +R    + N++
Sbjct: 169 DIKKERVREIAEELNLA 185


>gi|298486037|ref|ZP_07004111.1| GMP synthase [glutamine-hydrolyzing] [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159514|gb|EFI00561.1| GMP synthase [glutamine-hydrolyzing] [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA----------AREARYALISEHAKTINAT 120
            V +     + +   + +    +    L              R       +E  K  N  
Sbjct: 272 QVMAMFAENMGVK-VIRANAEERFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLDNIK 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  ++NL +  P     ++++R  
Sbjct: 331 YLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRRL 387

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 388 GLELGLPY 395


>gi|297571855|ref|YP_003697629.1| GMP synthase, large subunit [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932202|gb|ADH93010.1| GMP synthase, large subunit [Arcanobacterium haemolyticum DSM
           20595]
          Length = 521

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 26/190 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V   H + A+SGG DS      +H  + D      + + + VDH  LR+    E  
Sbjct: 211 IRAQVGDKHAICALSGGVDSSVAAALVHRAIGD------QLTCVFVDHGLLRKG---EAE 261

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARYALISEHAKTINATLIMTAHT 127
            V  D      +   +V+   S+     +A  R   E R  +  E  ++  A  I     
Sbjct: 262 QVIEDYAEARGMK--IVAVDESERFLTALAGVRDPEEKRKIIGREFIRSFEAAQIKLMEE 319

Query: 128 FDDQLE-------TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDI 177
             + +E       T+Y          G            +  D+   +  P     ++++
Sbjct: 320 APEGVEFAFLVQGTLYPDVVESGGGDGTANIKSHHNVGGLPDDIEFSLVEPLRDLFKDEV 379

Query: 178 RSFLLQRNIS 187
           R+  L+  +S
Sbjct: 380 RAIGLELGLS 389


>gi|262306001|gb|ACY45593.1| gln amidotransferase [Aphonopelma chalcodes]
          Length = 197

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++ ++  + +L+ VSGG DS      LH  L        +  AI +D+   R+    E 
Sbjct: 36  YIKKIIGNSKVLMLVSGGVDSTVCAALLHRALQAD-----QVIAIHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V     +L +   V++
Sbjct: 88  FQVETSLKKLGLQLKVLN 105


>gi|315499649|ref|YP_004088452.1| gmp synthase, large subunit [Asticcacaulis excentricus CB 48]
 gi|315417661|gb|ADU14301.1| GMP synthase, large subunit [Asticcacaulis excentricus CB 48]
          Length = 516

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 65/185 (35%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + +      + + + VD   LR+   ++V 
Sbjct: 212 IRAQVGSGRVICGLSGGVDSSVAAVLIHEAIGE------QLTCVFVDTGLLRKNEGEQV- 264

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            VS       I    V  ++         S P+       R        E AK   A  +
Sbjct: 265 -VSLFRDHYNIPLIHVQAQDKFLGALKGLSDPEQKRKTIGRLFIEVFDEEAAKIDGAEFL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 324 AQGTLYPDVVESV---SPHGGPSTVIKSHHNVGGLPDYMKLKLVEPLRELFKDEVRALGR 380

Query: 183 QRNIS 187
           +  +S
Sbjct: 381 ELGLS 385


>gi|15679507|ref|NP_276624.1| NH(3)-dependent NAD+ synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2622628|gb|AAB85985.1| NH(3)-dependent NAD+ synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 274

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 32/194 (16%)

Query: 4   SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVD 59
             +  +  F+R  V  +    +++ +SGG DS  +     +++  DR  G I        
Sbjct: 18  EVVSVIEDFIRQKVAESGASGVVLGLSGGVDSSTVAYLAVNALGPDRVLGLIM------- 70

Query: 60  HCLRETA---KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAA-AREARYALISEHA 114
                ++   +D++R+   V   L I    +         TGL +  A E   A +   A
Sbjct: 71  ----PSSTTPRDDLRHARTVADELGIESETIDIDPIIESLTGLCSHNANELALANLKPRA 126

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +     +I+  H           R       +   L G      Y        P     +
Sbjct: 127 RM----VILYYHANS------LNRLVAGTGNRTELLLGYFTK--YGDGGVDMLPIGGLYK 174

Query: 175 EDIRSFLLQRNISW 188
             +R    +  +  
Sbjct: 175 GQVRELAGRLGVPP 188


>gi|121604901|ref|YP_982230.1| GMP synthase [Polaromonas naphthalenivorans CJ2]
 gi|120593870|gb|ABM37309.1| GMP synthase (glutamine-hydrolyzing) [Polaromonas naphthalenivorans
           CJ2]
          Length = 540

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 27/193 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKD--E 69
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR    D   
Sbjct: 221 IRQQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLNEGDMVM 274

Query: 70  VRYVSDVCSR----------LRIAHSVVSWKNSKPQTGLM----AAAREARYALISEHAK 115
             +V  + ++          L     V   +  +   G        A  AR     + A 
Sbjct: 275 EMFVGKLHAKVIRVDAAEQFLGHLAGVSDPEAKRKIIGREFVEVFKAEAARLKAGLDGAY 334

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  +     + D +E+      +      +        +   L L +  P     ++
Sbjct: 335 K-GAKWLAQGTIYPDVIES---GGAKSKKAVSIKSHHNVGGLPEQLGLKLLEPLRELFKD 390

Query: 176 DIRSFLLQRNISW 188
           ++R   +   +  
Sbjct: 391 EVRELGVALGLPH 403


>gi|167739138|ref|ZP_02411912.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 14]
 gi|217421659|ref|ZP_03453163.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           576]
 gi|254297240|ref|ZP_04964693.1| GMP synthase [Burkholderia pseudomallei 406e]
 gi|157807404|gb|EDO84574.1| GMP synthase [Burkholderia pseudomallei 406e]
 gi|217395401|gb|EEC35419.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           576]
          Length = 539

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L 62
           L
Sbjct: 259 L 259


>gi|332527176|ref|ZP_08403249.1| GMP synthase [Rubrivivax benzoatilyticus JA2]
 gi|332111600|gb|EGJ11582.1| GMP synthase [Rubrivivax benzoatilyticus JA2]
          Length = 534

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               +E     +R  V    +++ +SGG DS      +H  + +      + + + VDH 
Sbjct: 205 MRDHVEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGE------QLTCVFVDHG 258

Query: 62  L 62
           L
Sbjct: 259 L 259


>gi|294055153|ref|YP_003548811.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614486|gb|ADE54641.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 356

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 30/129 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            +LVA+SGG DS    + L       S   I+         + E        A+ ++   
Sbjct: 3   KVLVALSGGVDSAVAALLLKEQGYAVSGAYIRTW-------MNEEAPLADCPAQQDIEDS 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHAKTI 117
             V   L I + +V+  N   +                       RE ++ +   +A + 
Sbjct: 56  RAVAQHLGIDYEIVNLVNEYSEHVVNYLVDGYKRGITPNPDMMCNREMKFGIFQNYALSQ 115

Query: 118 NATLIMTAH 126
               + T H
Sbjct: 116 GFDAMATGH 124


>gi|261820583|ref|YP_003258689.1| GMP synthase [Pectobacterium wasabiae WPP163]
 gi|261604596|gb|ACX87082.1| GMP synthase, large subunit [Pectobacterium wasabiae WPP163]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-R-ETAKDEV 70
           +R  V   H+++ +SGG DS    + LH  + DR       + + VD+ L R   A   +
Sbjct: 221 IREQVGNDHVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLLRLNEADQVL 274

Query: 71  RYVSDVCSRLRIAHSVV--SWKNSKPQTGLMAAAREARYALI-----SEHAKTINATLIM 123
               D    L I H      + N         A R+    +       E  K  +   + 
Sbjct: 275 EMFGDH-FGLNIVHVAAEDRFLNELAGENDPEAKRKIIGRVFVEVFDEEANKQTDVKWLA 333

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+    + + +  K          +  ++ L +  P     ++++R   L+
Sbjct: 334 QGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKELFKDEVRKIGLE 390

Query: 184 RNISW 188
             + +
Sbjct: 391 LGLPY 395


>gi|300768828|ref|ZP_07078722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300493561|gb|EFK28735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 379

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 32/146 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS  + + L     D      +++    +    +        A ++ + V
Sbjct: 13  RVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 64

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  ++++     +  T  +   ++ R             +    ++A  +
Sbjct: 65  AKVADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDL 124

Query: 118 NATLIMTAHTFDDQL-ETVYMRSQRD 142
            A  I T H    Q  E   M   R 
Sbjct: 125 GADYIATGHYARLQHDEDGTMHLLRG 150


>gi|261419197|ref|YP_003252879.1| exsB protein [Geobacillus sp. Y412MC61]
 gi|261375654|gb|ACX78397.1| exsB protein [Geobacillus sp. Y412MC61]
          Length = 224

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 56/194 (28%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS   L       +   FG+++  A++ D+  R   + E+     +   L 
Sbjct: 10  VVV-FSGGQDSTTCLF-----WAKEQFGEVE--AVTFDYGQRH--RREIDVAQAIADELG 59

Query: 82  IAHSVVSWKNSKPQTGLMAAAREAR--------------------YALISEHAKTINATL 121
           + H+V+               R+                       +  +  AK   A  
Sbjct: 60  VRHTVLDLSLLGQLAPNALTRRDIAIEQKEGELPTTFVDGRNLLFLSFAAVFAKQRGARH 119

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLR 171
           I+T        ET              G     D  +  LN+           I  P + 
Sbjct: 120 IVTG-----VCET-----------DFSGYPDCRDVFIKSLNVTLNLAMDYEFVIHTPLMW 163

Query: 172 CRREDIRSFLLQRN 185
             + +      +  
Sbjct: 164 LTKAETWKLADELG 177


>gi|28378785|ref|NP_785677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum WCFS1]
 gi|254556990|ref|YP_003063407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum JDM1]
 gi|308180978|ref|YP_003925106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|38258513|sp|Q88V96|MNMA_LACPL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|28271622|emb|CAD64528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum WCFS1]
 gi|254045917|gb|ACT62710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum JDM1]
 gi|308046469|gb|ADN99012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 374

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 32/146 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKDEVRYV 73
            ++V +SGG DS  + + L     D      +++    +    +        A ++ + V
Sbjct: 8   RVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDDTDENGVCT--------ATEDYKDV 59

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YALISEHAKTI 117
           + V  ++ I +  ++++     +  T  +   ++ R             +    ++A  +
Sbjct: 60  AKVADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDL 119

Query: 118 NATLIMTAHTFDDQL-ETVYMRSQRD 142
            A  I T H    Q  E   M   R 
Sbjct: 120 GADYIATGHYARLQHDEDGTMHLLRG 145


>gi|313672100|ref|YP_004050211.1| gmp synthase (glutamine-hydrolyzing) [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938856|gb|ADR18048.1| GMP synthase (glutamine-hydrolyzing) [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 516

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 26/190 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +RSLV    +L A+SGG DS    + +H  + D      +   + V++  LR     E  
Sbjct: 213 IRSLVGEKKVLCALSGGVDSSVAAVLVHEAIGD------QLICVFVNNGLLR---YREAE 263

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKTINATLI 122
            V        +I    V  ++   +        E +          +  E AK +     
Sbjct: 264 QVLKTFRDNFKINLIYVDAEDRFLEALRDIEEPEKKRKTIGNLFIRIFEEEAKKLGDFEF 323

Query: 123 MTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +   T   D +E+V  +      +    + G+ +    D+   +  P     ++++R   
Sbjct: 324 LVQGTLYPDVIESVSFKGPSATIKTHHNVGGLPE----DMKFKLIEPLRELFKDEVRKVG 379

Query: 182 LQRNISWCED 191
           L+  +S  ED
Sbjct: 380 LELGLS--ED 387


>gi|257125311|ref|YP_003163425.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
 gi|257049250|gb|ACV38434.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Leptotrichia buccalis C-1013-b]
          Length = 364

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 36/195 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET------AK 67
           +    ++V +SGG DS    + L            +   +++ H    L E       + 
Sbjct: 5   LDDKKVVVGMSGGIDSSVAALLLKQ-------QGYEVIGVTLKHLPDELSENPGKTCCSL 57

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----------------AAREARYALIS 111
           D++      C  L I H V++      +  +                     + +   + 
Sbjct: 58  DDINDARYTCYNLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLV 117

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E A  +    I T H        + +  + +  ++    + M   +  D+      P   
Sbjct: 118 EFADKMGIKYISTGHYSKVSENNMLLWDKNNRKDQ----TYMLYRLDKDIVERFLFPLAE 173

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    Q  I
Sbjct: 174 YEKSEVREIARQNGI 188


>gi|195475939|ref|XP_002090240.1| GE12995 [Drosophila yakuba]
 gi|194176341|gb|EDW89952.1| GE12995 [Drosophila yakuba]
          Length = 683

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+   R+ 
Sbjct: 216 EECIRYIREKVGSNKVLLLVSGGVDSSVCAALL-----RRALYPNQIIAVHVDNGFMRKN 270

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
              E   V      + I   V  
Sbjct: 271 ---ESEKVERSLRDIGIDLIVRK 290


>gi|241663812|ref|YP_002982172.1| sulfate adenylyltransferase subunit 2 [Ralstonia pickettii 12D]
 gi|240865839|gb|ACS63500.1| sulfate adenylyltransferase, small subunit [Ralstonia pickettii
           12D]
          Length = 316

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H   E        V+ + +RL +
Sbjct: 45  FSGGKDSIVMLHLALKAFRLGERKIELPFPLVHIDTGHNYPEVITFRDEQVAKLGARLVV 104

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  ++     +M     D
Sbjct: 105 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIESHGFDALMGGARRD 152


>gi|52550452|gb|AAU84301.1| argininosuccinate synthase [uncultured archaeon GZfos9D1]
          Length = 388

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 56/186 (30%), Gaps = 46/186 (24%)

Query: 20  AHILVAVSGGSD-SMG--LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSD 75
             +++A SGG D S+   LL           +G     A++VD    E    E     + 
Sbjct: 2   KKVVLAYSGGLDTSVCIPLL--------KEHYGYDNVIAVTVDVGQPEDDIKEAKERGAK 53

Query: 76  VCSRLR-IAHSVVSWKNS-----KPQTGLM------AAAREARYALISEHAKTINATLIM 123
           +C   R I       ++      K            A AR      + E A+  NA    
Sbjct: 54  LCDSYREIDAKEEFVRDYIFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREENAD--A 111

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDIRSF 180
            AH                    G G   +  D +    +L +  P   L   R + R +
Sbjct: 112 VAH-----------------GCTGKGNDQLRFDAVFRTTDLDVVAPMRELSLTRAEERKY 154

Query: 181 LLQRNI 186
             +  I
Sbjct: 155 AAEHGI 160


>gi|22299961|ref|NP_683208.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Thermosynechococcus elongatus BP-1]
 gi|44887998|sp|Q8DGA5|GUAA_THEEB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|22296146|dbj|BAC09970.1| GMP synthetase [Thermosynechococcus elongatus BP-1]
          Length = 535

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E++R  VR+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 220 EAIRE-VRAKVGDKRVLLALSGGVDSSTLAFLLHRAIGDQ 258


>gi|8039796|sp|O27554|NADE_METTH RecName: Full=Probable NH(3)-dependent NAD(+) synthetase
          Length = 266

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 32/194 (16%)

Query: 4   SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVD 59
             +  +  F+R  V  +    +++ +SGG DS  +     +++  DR  G I        
Sbjct: 10  EVVSVIEDFIRQKVAESGASGVVLGLSGGVDSSTVAYLAVNALGPDRVLGLIM------- 62

Query: 60  HCLRETA---KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAA-AREARYALISEHA 114
                ++   +D++R+   V   L I    +         TGL +  A E   A +   A
Sbjct: 63  ----PSSTTPRDDLRHARTVADELGIESETIDIDPIIESLTGLCSHNANELALANLKPRA 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +     +I+  H           R       +   L G      Y        P     +
Sbjct: 119 RM----VILYYHANS------LNRLVAGTGNRTELLLGYFTK--YGDGGVDMLPIGGLYK 166

Query: 175 EDIRSFLLQRNISW 188
             +R    +  +  
Sbjct: 167 GQVRELAGRLGVPP 180


>gi|319766013|ref|YP_004131514.1| exsB protein [Geobacillus sp. Y412MC52]
 gi|317110879|gb|ADU93371.1| exsB protein [Geobacillus sp. Y412MC52]
          Length = 223

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 56/194 (28%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++V  SGG DS   L       +   FG+++  A++ D+  R   + E+     +   L 
Sbjct: 9   VVV-FSGGQDSTTCLF-----WAKEQFGEVE--AVTFDYGQRH--RREIDVAQAIADELG 58

Query: 82  IAHSVVSWKNSKPQTGLMAAAREAR--------------------YALISEHAKTINATL 121
           + H+V+               R+                       +  +  AK   A  
Sbjct: 59  VRHTVLDLSLLGQLAPNALTRRDIAIEQKEGELPTTFVDGRNLLFLSFAAVFAKQRGARH 118

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLR 171
           I+T        ET              G     D  +  LN+           I  P + 
Sbjct: 119 IVTG-----VCET-----------DFSGYPDCRDVFIKSLNVTLNLAMDYEFVIHTPLMW 162

Query: 172 CRREDIRSFLLQRN 185
             + +      +  
Sbjct: 163 LTKAETWKLADELG 176


>gi|297618684|ref|YP_003706789.1| Queuosine synthesis-like protein [Methanococcus voltae A3]
 gi|297377661|gb|ADI35816.1| Queuosine synthesis-like protein [Methanococcus voltae A3]
          Length = 250

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +++      ++V+ SGG DS         +++  +       A+++D+     +K  ++Y
Sbjct: 9   IKNFFRGKKVIVSYSGGVDST--------LVAKLAQNGEDCVAVTIDNGF--FSKSSLKY 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---YALISEHAKTINATLIMTAHTFD 129
                  + + H ++          +     E +     +++E    +   +I+    ++
Sbjct: 59  AEKKAKLMNLKHVIIDVNQLDENVCVENRCYECKKMMAKILNEVKDQLEFDIIVDGTIYE 118

Query: 130 DQLE 133
           D  E
Sbjct: 119 DLSE 122


>gi|21223164|ref|NP_628943.1| GMP synthase [Streptomyces coelicolor A3(2)]
 gi|256785738|ref|ZP_05524169.1| GMP synthase [Streptomyces lividans TK24]
 gi|289769630|ref|ZP_06529008.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           lividans TK24]
 gi|13627139|sp|Q9L0H2|GUAA_STRCO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|7320904|emb|CAB82024.1| GMP synthase [Streptomyces coelicolor A3(2)]
 gi|289699829|gb|EFD67258.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           lividans TK24]
          Length = 526

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 71/197 (36%), Gaps = 24/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R+ V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 209 NVIEEQVAAIRAQVGDRRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 262

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARY---ALISE 112
           R+   ++V   +V+    +L++  +   +       S P+       RE          E
Sbjct: 263 RKGETEQVEKDFVAATGVQLKVVDASERFLGALAGVSDPEQKRKIIGREFIRVFEQAQLE 322

Query: 113 HAKTINATL--IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             +     +  ++    + D +E+             +        +  D+   +  P  
Sbjct: 323 IMREDGPEVAFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDIEFELVEPLR 377

Query: 171 RCRREDIRSFLLQRNIS 187
           +  ++++R    +  + 
Sbjct: 378 QLFKDEVRMVGQELGLP 394


>gi|306831323|ref|ZP_07464483.1| GMP synthase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426559|gb|EFM29671.1| GMP synthase [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH L
Sbjct: 219 IRKKVGDRKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGL 262


>gi|306833433|ref|ZP_07466560.1| GMP synthase [Streptococcus bovis ATCC 700338]
 gi|304424203|gb|EFM27342.1| GMP synthase [Streptococcus bovis ATCC 700338]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH L
Sbjct: 219 IRKKVGDRKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGL 262


>gi|289677927|ref|ZP_06498817.1| GMP synthase [Pseudomonas syringae pv. syringae FF5]
 gi|302185731|ref|ZP_07262404.1| GMP synthase [Pseudomonas syringae pv. syringae 642]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
            V +     + +   V+     +     +A             R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLAGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|288905251|ref|YP_003430473.1| bifunctional GMP synthase/glutamine amidotransferase [Streptococcus
           gallolyticus UCN34]
 gi|325978227|ref|YP_004287943.1| GMP synthase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|288731977|emb|CBI13542.1| putative bifunctional GMP synthase/glutamine amidotransferase
           [Streptococcus gallolyticus UCN34]
 gi|325178155|emb|CBZ48199.1| GMP synthase [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH L
Sbjct: 219 IRKKVGDRKVLLGLSGGVDSSVVGVLLQRAIGD------QLTCIFVDHGL 262


>gi|225631290|ref|ZP_03787968.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
 gi|225591011|gb|EEH12215.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia endosymbiont of Muscidifurax uniraptor]
          Length = 370

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 28/200 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDVCSR 79
           +VA+SGG DS      LH++        ++      +   R+    A  ++     V   
Sbjct: 22  VVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNANARKGACCAGQDIYDAKRVAES 81

Query: 80  LRIAHSVVSWKNSKPQTGLMAAARE-AR---------------YALISEHAKTINATLIM 123
           +   H +++++    +  +   A    R               +  + +  K + A +++
Sbjct: 82  VGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVTKNLGADVLV 141

Query: 124 TAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-PFLRCRREDIRS 179
           T H     +   E    RS     ++   L            L + R P     + DIR 
Sbjct: 142 TGHYVRRLEKNGEVKLCRSIDKSKDQSYFLFATTQE-----QLKLLRFPLGGFYKSDIRK 196

Query: 180 FLLQRNISWCEDPSNTDDRF 199
                ++   E P + D  F
Sbjct: 197 LAKYFSLQISEKPDSQDICF 216


>gi|194878400|ref|XP_001974055.1| GG21516 [Drosophila erecta]
 gi|190657242|gb|EDV54455.1| GG21516 [Drosophila erecta]
          Length = 677

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E +R ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+
Sbjct: 211 MGSRKDECIR-YIREKVGNNKVLLLVSGGVDSSVCAALL-----RRALYPNQIIAVHVDN 264

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVS 88
              R+    E   V      + I   V  
Sbjct: 265 GFMRKN---ESEKVERSLRDIGIDLIVRK 290


>gi|66044510|ref|YP_234351.1| GMP synthase [Pseudomonas syringae pv. syringae B728a]
 gi|75503069|sp|Q4ZX09|GUAA_PSEU2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|63255217|gb|AAY36313.1| GMP synthase, C-terminal:GMP synthase, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
            V +     + +   V+     +     +A             R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLAGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|322368177|ref|ZP_08042746.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haladaptatus paucihalophilus DX253]
 gi|320552193|gb|EFW93838.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haladaptatus paucihalophilus DX253]
          Length = 320

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 51/181 (28%), Gaps = 42/181 (23%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRY--VSDVC 77
           +LVA SGG DS  +    H  L D         A +        ++   E      + V 
Sbjct: 21  VLVAFSGGVDSSVVAAIAHDALGD------DAVACT------AKSETLPEAELGDANRVA 68

Query: 78  SRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             + I H V  +         +         R  R   + + A  ++  ++      DD 
Sbjct: 69  DEIGIRHVVAEFSELDDPNFVENGDDRCYHCRTMRLGAMFDKAAELDIDIVCDGTNADDV 128

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNISWC 189
                              +G    +     L    P L     + ++R      ++S  
Sbjct: 129 ------------------SAGHRPGLRAVEELDAYSPLLQHDISKAEVREIAEAYDLSVA 170

Query: 190 E 190
           +
Sbjct: 171 D 171


>gi|188585091|ref|YP_001916636.1| GMP synthase (glutamine-hydrolyzing) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|226739645|sp|B2A5V5|GUAA_NATTJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|179349778|gb|ACB84048.1| GMP synthase (glutamine-hydrolyzing) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 510

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 26/194 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +++       +  +SGG DS        ++L  ++ G    + I V+H  L
Sbjct: 200 SYIEETVEQIKTEAQGRKAVCGLSGGIDSTV-----AALLVQKAIGD-DLTCIFVNHGLL 253

Query: 63  RETAKDEVRYVSDVCSR-LRIAHSVVSWKNS---------KPQTGLMAAAREARYALISE 112
           R+    E   V ++  +   I    V   +           P+        E       E
Sbjct: 254 RKN---EQDQVRELFEQEFDINLVYVDASDRFLNKLQGVTDPEQKRKIIGEEFIRVFEEE 310

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   ++    + D +E              +        +   ++L +  P    
Sbjct: 311 ARKIGDVDFLVQGTLYTDVVE------SGTETASVIKSHHNVGGLPEKMDLSLIEPLNSL 364

Query: 173 RREDIRSFLLQRNI 186
            ++++R    +  +
Sbjct: 365 FKDEVRQVARELGL 378


>gi|153005212|ref|YP_001379537.1| tRNA-specific 2-thiouridylase MnmA [Anaeromyxobacter sp. Fw109-5]
 gi|205811178|sp|A7HCV7|MNMA_ANADF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|152028785|gb|ABS26553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 349

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDEVRYVSD 75
            +LVA+SGG DS      L  V        +       D+          A D++     
Sbjct: 2   RVLVALSGGVDSSTAAALL--VAEGHDVIGVSMRVA--DYSDARRGRSCCAPDDLEDARA 57

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTINA 119
              RL I   V + +    +  +    R                + ++  +   A+ + A
Sbjct: 58  AARRLDIPFYVANVEARFRERVIEPFVRDYVEGRTPNPCVACNSDVKFDWLLARARALGA 117

Query: 120 TLIMTAHTFDDQLET-----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             + T H    ++E         R+     ++   L G+    L D    +  P     +
Sbjct: 118 -KLATGHYA--RVERRGGRFALCRAGDPAKDQTYFLYGLGQEALRD----VLFPVGDLAK 170

Query: 175 EDIRSFLLQRNIS 187
            D+R+   Q  + 
Sbjct: 171 RDVRAVAAQAGLP 183


>gi|330969055|gb|EGH69121.1| GMP synthase [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
            V +     + +   V+     +     +A             R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLAGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|306827317|ref|ZP_07460604.1| GMP synthase [Streptococcus pyogenes ATCC 10782]
 gi|304430464|gb|EFM33486.1| GMP synthase [Streptococcus pyogenes ATCC 10782]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|237716742|ref|ZP_04547223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
 gi|229442725|gb|EEO48516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. D1]
          Length = 368

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 30/178 (16%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86
           SGG+DS     A+  + +      + F    ++      + + +    ++  RL I H  
Sbjct: 2   SGGTDSSV--AAMRLLEAGYEVIGVTFRFYELN-----GSTEYLEDARNLAERLGIRHIT 54

Query: 87  VSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIMTAH-TFD 129
              +    +  +        A R            ++ L+++ A  +    I T H   +
Sbjct: 55  YDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGIFYIATGHYAQN 114

Query: 130 DQL-ETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            QL ET Y+    D  +     L G+   IL  +      P     + + R++  +  
Sbjct: 115 IQLNETFYITYAADSDKDQTFFLWGLKQDILNRM----LLPMGDITKAEARAWAAEHG 168


>gi|171058746|ref|YP_001791095.1| GMP synthase large subunit [Leptothrix cholodnii SP-6]
 gi|170776191|gb|ACB34330.1| GMP synthase, large subunit [Leptothrix cholodnii SP-6]
          Length = 532

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 34/200 (17%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E+V   +R+ V    +++ +SGG DS      +H  + D      + + + VDH L R  
Sbjct: 212 EAVAH-IRAQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN 264

Query: 66  AKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEH 113
              E   V +    RL     VV  + ++           P+       RE      +E 
Sbjct: 265 ---EGAMVMEMFAGRLH--AKVVHVEAAEQFLGHLKGVTDPEQKRKIIGREFVEVFQAEA 319

Query: 114 AKTIN-----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           AK        A  +     + D +E+    S++   +    + G+ +T+     L +  P
Sbjct: 320 AKLKGDGNKGAKWLAQGTIYPDVVESGGTASKKATIKSHHNVGGLPETL----GLKLLEP 375

Query: 169 FLRCRREDIRSFLLQRNISW 188
                ++++R   +   +  
Sbjct: 376 LRELFKDEVRELGVALGLPH 395


>gi|139473722|ref|YP_001128438.1| GMP synthase [Streptococcus pyogenes str. Manfredo]
 gi|226739752|sp|A2RED2|GUAA_STRPG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|134271969|emb|CAM30207.1| GMP synthase [Streptococcus pyogenes str. Manfredo]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|94990542|ref|YP_598642.1| GMP synthase [Streptococcus pyogenes MGAS10270]
 gi|226739750|sp|Q1JGP6|GUAA_STRPD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|94544050|gb|ABF34098.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS10270]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|94988651|ref|YP_596752.1| GMP synthase [Streptococcus pyogenes MGAS9429]
 gi|94992475|ref|YP_600574.1| GMP synthase [Streptococcus pyogenes MGAS2096]
 gi|226739748|sp|Q1JBM8|GUAA_STRPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739749|sp|Q1JLL1|GUAA_STRPC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|94542159|gb|ABF32208.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS9429]
 gi|94545983|gb|ABF36030.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS2096]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|50914254|ref|YP_060226.1| GMP synthase [Streptococcus pyogenes MGAS10394]
 gi|73919721|sp|Q5XC20|GUAA_STRP6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|50903328|gb|AAT87043.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus pyogenes
           MGAS10394]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|21910381|ref|NP_664649.1| GMP synthase [Streptococcus pyogenes MGAS315]
 gi|28895957|ref|NP_802307.1| GMP synthase [Streptococcus pyogenes SSI-1]
 gi|25452983|sp|Q8K7E6|GUAA_STRP3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21904578|gb|AAM79452.1| putative GMP synthase [Streptococcus pyogenes MGAS315]
 gi|28811207|dbj|BAC64140.1| putative GMP synthase [Streptococcus pyogenes SSI-1]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|148546315|ref|YP_001266417.1| GMP synthase [Pseudomonas putida F1]
 gi|226739705|sp|A5VZC3|GUAA_PSEP1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148510373|gb|ABQ77233.1| GMP synthase (glutamine-hydrolyzing) [Pseudomonas putida F1]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 41/196 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---- 65
           VR+ V  A++L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 221 VRAQVGSANVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLHEGDQVM 274

Query: 66  -------------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
                        A  E +++ ++               + P+       R       +E
Sbjct: 275 AMFKENMGVKVIRADAEKQFLDNLAGE------------ADPEKKRKIIGRTFIDVFDAE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K  N   +     + D +E+      +      +        +  ++NL +  P    
Sbjct: 323 ASKLENIQFLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|15675169|ref|NP_269343.1| GMP synthase [Streptococcus pyogenes M1 GAS]
 gi|19746136|ref|NP_607272.1| GMP synthase [Streptococcus pyogenes MGAS8232]
 gi|56808413|ref|ZP_00366163.1| COG0519: GMP synthase, PP-ATPase domain/subunit [Streptococcus
           pyogenes M49 591]
 gi|71903556|ref|YP_280359.1| GMP synthase [Streptococcus pyogenes MGAS6180]
 gi|71910732|ref|YP_282282.1| GMP synthase [Streptococcus pyogenes MGAS5005]
 gi|94994464|ref|YP_602562.1| GMP synthase [Streptococcus pyogenes MGAS10750]
 gi|209559474|ref|YP_002285946.1| GMP synthase [Streptococcus pyogenes NZ131]
 gi|54037233|sp|P64300|GUAA_STRP8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54041337|sp|P64299|GUAA_STRP1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206834|sp|Q48TF6|GUAA_STRPM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739751|sp|Q1J6G5|GUAA_STRPF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739755|sp|B5XLN9|GUAA_STRPZ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|13622332|gb|AAK34064.1| putative GMP synthase [Streptococcus pyogenes M1 GAS]
 gi|19748312|gb|AAL97771.1| putative GMP synthase [Streptococcus pyogenes MGAS8232]
 gi|71802651|gb|AAX72004.1| glutamine-hydrolyzing GMP synthase [Streptococcus pyogenes
           MGAS6180]
 gi|71853514|gb|AAZ51537.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS5005]
 gi|94547972|gb|ABF38018.1| GMP synthase (glutamine-hydrolyzing) [Streptococcus pyogenes
           MGAS10750]
 gi|209540675|gb|ACI61251.1| GMP synthase - glutamine-hydrolyzing [Streptococcus pyogenes NZ131]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|330894507|gb|EGH27168.1| GMP synthase [Pseudomonas syringae pv. mori str. 301020]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 31/191 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEG---- 270

Query: 70  VRYV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTI 117
              V +     + +   V+     +           P+       R       +E  K  
Sbjct: 271 -EQVMAMFAENMGVK--VIRANAEEQFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLD 327

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   +     + D +E+      +      +        +  ++NL +  P     ++++
Sbjct: 328 NIKYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEV 384

Query: 178 RSFLLQRNISW 188
           R   L+  + +
Sbjct: 385 RRLGLELGLPY 395


>gi|298245087|ref|ZP_06968893.1| phosphoadenosine phosphosulfate reductase [Ktedonobacter
          racemifer DSM 44963]
 gi|297552568|gb|EFH86433.1| phosphoadenosine phosphosulfate reductase [Ktedonobacter
          racemifer DSM 44963]
          Length = 289

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 13/74 (17%)

Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VR 71
           L     ++V+VSGG DS+ +L      L        +       H +    +D    V 
Sbjct: 5  DLHQATRVVVSVSGGKDSIAML------LEVLETVPHELVIAH--HQI--VLEDWPGTVE 54

Query: 72 YVSDVCSRLRIAHS 85
          Y   VC RL +   
Sbjct: 55 YCGTVCRRLGVPLY 68


>gi|288800069|ref|ZP_06405528.1| GMP synthase [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333317|gb|EFC71796.1| GMP synthase [Prevotella sp. oral taxon 299 str. F0039]
          Length = 514

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 73/199 (36%), Gaps = 35/199 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    ++  V    +++ +SGG DS    + L   + +      + + I VDH  L
Sbjct: 198 SYVETTVEELKKQVGSDRVILGLSGGVDSTVCAMLLKKAIGN------QLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKNSK-----------PQTGLMAAAREARYALI 110
           R+   +      +V      +  +V+    S+           P+       R+      
Sbjct: 252 RKNEFN------NVMEAYSGLGLNVIGVDASEKFFKDLEGITDPEQKRKIIGRDFVEVFN 305

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRP 168
           +E  K  +A  +     + D++E++        +  GM +        +  +++L +  P
Sbjct: 306 AEAKKITDAKWLAQGTIYPDRIESL--------SITGMTIKSHHNVGGLPKEMHLQLCEP 357

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R    +  I 
Sbjct: 358 LQWLFKDEVRRVGYELGIP 376


>gi|167518011|ref|XP_001743346.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778445|gb|EDQ92060.1| predicted protein [Monosiga brevicollis MX1]
          Length = 706

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 62/205 (30%), Gaps = 36/205 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHC-----LRETAKDEVRYV 73
            I +A SGG+ S  LL  +   ++     +++     I +D        +   +     +
Sbjct: 84  RIALAFSGGNRSTALLGIIRRHMTKGEHRQLRIVPTVIHIDDGCLFGATQAEHERRAERI 143

Query: 74  SDVCSRLR------IAHSVVSWKNSKPQTGLMAAA------------------REARYAL 109
             + + L       +    +   + +P     AA                   R  +  L
Sbjct: 144 QSLANALDYEEVHVLRLEELYRADDEPDLTAAAARVCALFADLSTVTARQDFLRTMKARL 203

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-ISRP 168
           +    + ++   +M      D  + + MR      +   G      T   +++   + RP
Sbjct: 204 LRAATQQLDCHKLMVG----DCHDQIAMRILVQTTQGRGGNMTRFSTFCDEVDGTAMLRP 259

Query: 169 FLRCRREDIRSFLLQRNISWCEDPS 193
                  ++  +   R +     P+
Sbjct: 260 LRAISARELGYYNHFRRLEPVLYPT 284


>gi|15679119|ref|NP_276236.1| hypothetical protein MTH1108 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|41018374|sp|O27180|QUEC_METTH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|2622210|gb|AAB85597.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|3023053|gb|AAC12720.1| ORF2R [Methanothermobacter thermautotrophicus]
          Length = 222

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 55/197 (27%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS        +V +     + +  AI+ D+  R +A+ E+ Y   +   L I H+
Sbjct: 7   LSGGMDS--------AVATALMMDEYEIHAITFDYGQR-SARMELEYARRLSEHLGIEHT 57

Query: 86  VVSWKNSKPQTG--------------------LMAAAREA----RYALISEH----AKTI 117
            +  +      G                     +  AR+     R  + +      A+ +
Sbjct: 58  TLDLQWLGRLGGSVLTAGGDIPSPSNLDDTVECLETARKVWVPGRNLVFTSIGVSFAEAM 117

Query: 118 NATLIMT------AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +A  ++       A TF D  E       R      +              + +  P + 
Sbjct: 118 DAGAVIVGWDLEEAETFPDNSEEFLDAFNRLLEIGTL------------DGVRVVAPVIG 165

Query: 172 CRREDIRSFLLQRNISW 188
             + +I     +  + +
Sbjct: 166 MTKREIVEAGHEVGLPF 182


>gi|325927859|ref|ZP_08189083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas perforans 91-118]
 gi|325541699|gb|EGD13217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas perforans 91-118]
          Length = 378

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 49/199 (24%), Gaps = 51/199 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            I+V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L I           W           AA           RE ++    + 
Sbjct: 52  RRDAVAVCGVLGIPFHFRDFSGEYWSGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H         +      R  R           +       L   +  P
Sbjct: 112 AQALGAERIATGHYAQVAHRGGR-----WRLLRGADRGKDQSYFLHQLGQAQLAATLF-P 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +  +R       + 
Sbjct: 166 IGDLEKSALRRIAQDAGLP 184


>gi|302819257|ref|XP_002991299.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
 gi|300140879|gb|EFJ07597.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii]
          Length = 375

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 64/201 (31%), Gaps = 46/201 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEVR 71
            + V VSGG DS   L  L +     +   IK          +E           +++++
Sbjct: 2   RVAVLVSGGVDSSVALRLLCAAGHSCTAFYIKIW-------FQEDFQNFWSSCPWEEDLK 54

Query: 72  YVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISEHAK 115
           Y  DVC  + +   +V   +   +K  +  +   R  R             +    +H  
Sbjct: 55  YAQDVCDEVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHID 114

Query: 116 TINATLIMTAHTF------DDQLETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWIS 166
                 + + H        D+Q  T+  R +       ++   LS +    L     ++ 
Sbjct: 115 RTKFDRVASGHYARVERYVDEQG-TIRARLKLSKDEVKDQTYFLSQLSQEQL----GFLM 169

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + ++R      N+ 
Sbjct: 170 FPLGSLAKPEVRQLAHSLNLP 190


>gi|258593582|emb|CBE69923.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) [NC10 bacterium 'Dutch sediment']
          Length = 510

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 63/185 (34%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L A+SGG DS  + + +H  +        K + + VD+  LR+    +V 
Sbjct: 207 IRRRVGDQRVLCALSGGVDSSVVALLVHRAI------GPKLTCVFVDNGLLRKGEAAQVE 260

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
               +   L +    V  +            P+        E       E  +      +
Sbjct: 261 --QAMGEHLGVHLVSVDARERFLTRLKGIIDPEEKRKIIGAEFIAVFEEESRRLGRFDFL 318

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ +   ++    +  P     ++++R    
Sbjct: 319 AQGTLYPDVIESVSVKGPSVTIKSHHNVGGLPEQFDFE----LLEPLRELFKDEVRELGR 374

Query: 183 QRNIS 187
           +  + 
Sbjct: 375 ELGLP 379


>gi|264680822|ref|YP_003280732.1| Predicted tRNA(5-methylaminomethyl-2-
           thiouridylate)methyltransferase [Comamonas testosteroni
           CNB-2]
 gi|262211338|gb|ACY35436.1| Predicted tRNA(5-methylaminomethyl-2-
           thiouridylate)methyltransferase [Comamonas testosteroni
           CNB-2]
          Length = 376

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 44/202 (21%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L     +     +K               D+  Y   
Sbjct: 1   MSNKQRVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNW----------EDDDDSEYCSS 50

Query: 74  -------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALI 110
                  + V   + I    V++             RE +                    
Sbjct: 51  NIDFVDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAF 110

Query: 111 SEHAKTINATLIMTAH----TFDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            +HA  + A  I T H      +   +    ++   +  ++   L  +    L       
Sbjct: 111 LDHAMRLGAEKIATGHYARVRQNPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMF-- 168

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     + ++R    +  + 
Sbjct: 169 --PVGELHKTEVRRIAEEIGLP 188


>gi|229816665|ref|ZP_04446954.1| hypothetical protein COLINT_03714 [Collinsella intestinalis DSM
          13280]
 gi|229807793|gb|EEP43606.1| hypothetical protein COLINT_03714 [Collinsella intestinalis DSM
          13280]
          Length = 327

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
          R  +     L+A+SGG DS  +   L   +        +F  + V+H L
Sbjct: 31 REQIGDKKALLALSGGVDSSVVAALLIKAIGK------QFICVHVNHGL 73


>gi|152998143|ref|YP_001342978.1| GMP synthase [Marinomonas sp. MWYL1]
 gi|226739640|sp|A6W2W4|GUAA_MARMS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|150839067|gb|ABR73043.1| GMP synthase, large subunit [Marinomonas sp. MWYL1]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L+A+SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 221 MQEQVGDKKVLLALSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 274

Query: 72  YVSDVCSRLRIAHSVVSWKNSK---PQTGLMAAAREARY-------ALISEHAKTI-NAT 120
                   + +   V+          +    A   + R         +    A  + +  
Sbjct: 275 --KMFADNMGVK--VIRVDAEDLFLGKLANEADPEKKRKIIGNTFIDVFDTEATKLTDVE 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  D+   +  P     ++++R  
Sbjct: 331 FLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPEDMQFKLVEPLRELFKDEVRKL 387

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 388 GLELGLPY 395


>gi|57234425|ref|YP_181511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides ethenogenes 195]
 gi|123618735|sp|Q3Z8D8|MNMA_DEHE1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|57224873|gb|AAW39930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides ethenogenes 195]
          Length = 357

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 61/195 (31%), Gaps = 44/195 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----------VR 71
           I+VA+SGG DS    + L     D +   ++             + +E          + 
Sbjct: 8   IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQLK-----------SNNEPYGNGYNLKLIN 56

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-------------REARYALISEHAKTI- 117
              +V + L I H VV   +   Q  +                 R   Y  I    + I 
Sbjct: 57  RAREVAAALGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLEKIP 116

Query: 118 --NATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             NA  + T H      D+  T  ++   +  ++   L  +    L      +  P  + 
Sbjct: 117 DFNAGYLATGHYARVLSDENGTHLLKGADEKKDQSYFLYTLPPESLSR----LIFPLGKR 172

Query: 173 RREDIRSFLLQRNIS 187
            ++DI     +  + 
Sbjct: 173 YKKDIIRLADKMKLP 187


>gi|213971502|ref|ZP_03399613.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudomonas syringae pv. tomato T1]
 gi|301386107|ref|ZP_07234525.1| GMP synthase [Pseudomonas syringae pv. tomato Max13]
 gi|302060193|ref|ZP_07251734.1| GMP synthase [Pseudomonas syringae pv. tomato K40]
 gi|302135136|ref|ZP_07261126.1| GMP synthase [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213923694|gb|EEB57278.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pseudomonas syringae pv. tomato T1]
 gi|330965930|gb|EGH66190.1| GMP synthase [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     + +   V+     +           P+       R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|149191014|ref|ZP_01869275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio shilonii AK1]
 gi|148835148|gb|EDL52124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio shilonii AK1]
          Length = 369

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 55/195 (28%), Gaps = 39/195 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLR 171
            ++A  I   H       T     ++    +G+      S    T+ +D       P   
Sbjct: 119 VLDADYIAMGHYVS---RTFPENGEKPQMLRGLDSNKDQSYFLYTLSHDQVARSLFPVGE 175

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    ++ +
Sbjct: 176 LEKPEVRRIAEEQGL 190


>gi|254503485|ref|ZP_05115636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Labrenzia alexandrii DFL-11]
 gi|222439556|gb|EEE46235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Labrenzia alexandrii DFL-11]
          Length = 449

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 26/132 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC------LRETAKDEV 70
                ++VA+SGG DS  +   +H+   D     ++      DH           A  ++
Sbjct: 68  PEDTRVVVAMSGGVDSSVVAAMMHAEGYDVIGVTLQLY----DHGAAVAKTKSCCAGVDI 123

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                   ++ I H V+ +++   +  +   A                   ++  + + A
Sbjct: 124 HDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDLLKTA 183

Query: 115 KTINATLIMTAH 126
           + + A  + T H
Sbjct: 184 RDLGADALATGH 195


>gi|258648364|ref|ZP_05735833.1| GMP synthase [Prevotella tannerae ATCC 51259]
 gi|260851533|gb|EEX71402.1| GMP synthase [Prevotella tannerae ATCC 51259]
          Length = 517

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IES    ++S +    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 198 SFIESTVAQLKSQLGNDKVILGLSGGVDSSVCATLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|254786599|ref|YP_003074028.1| GMP synthase [Teredinibacter turnerae T7901]
 gi|259647690|sp|C5BLU3|GUAA_TERTT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|237687074|gb|ACR14338.1| GMP synthase (glutamine-hydrolyzing) [Teredinibacter turnerae
           T7901]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V    +L+ +SGG DS  +   LH  + D      + + + VD+  LR   K E  
Sbjct: 221 VREKVGSDKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLR---KQEGD 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALI-----SEHAKTINA 119
            V D     + +   VV                     R+           +E AK  N 
Sbjct: 272 QVMDMFAKNMGVK--VVRADAEDLFLSKLHGINDPEQKRKIIGNTFIEVFDTEAAKLQNV 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + +      +        +  D+   +  P     ++++R 
Sbjct: 330 KWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRK 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 IGLELGLPY 395


>gi|298490709|ref|YP_003720886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           ['Nostoc azollae' 0708]
 gi|298232627|gb|ADI63763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           ['Nostoc azollae' 0708]
          Length = 351

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 59/208 (28%), Gaps = 67/208 (32%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
             ++V +SGG DS      LH+         +   +  G+             E   D  
Sbjct: 2   KKVVVGLSGGVDSSVAAAMLHNQGYDVIGLTLWLMKGKGQCC----------SEGMID-- 49

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------------------- 109
              + VC +L I H VV  ++          A    Y L                     
Sbjct: 50  --AASVCEQLGIPHEVVDIRDVF-------QANIVDYLLSGYSMGITPLPCSQCNKTVKF 100

Query: 110 ---ISEHAKTINATLIMTAHTFDDQL---ETV----YMRSQRDYAEKGMGLSGMCDTILY 159
              +    + + +  I T H    Q+   ET      +R+     ++   L  +   +L 
Sbjct: 101 GPMVEYAREKLGSNAIATGHYA--QVRYDETTGRYKLLRAVYRNKDQSYFLYDLSQDLLS 158

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS 187
                   P     + D R    +  ++
Sbjct: 159 AS----VFPLGELNKTDTRRIAAEYGLT 182


>gi|154282387|ref|XP_001541989.1| GMP synthase subunit B [Ajellomyces capsulatus NAm1]
 gi|150410169|gb|EDN05557.1| GMP synthase subunit B [Ajellomyces capsulatus NAm1]
          Length = 543

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 38/204 (18%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I+ +R  V        ++ AVSGG DS      +   + +R      F A+ VD+  LR 
Sbjct: 225 IDRIRKLV---GEKGQVIGAVSGGVDSTVAAKLMQEAIGNR------FHAVLVDNGVLRL 275

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSW------------------KNSKPQTGLMAAAREA 105
               E   V + +   L I  +VV                    +     T +     EA
Sbjct: 276 N---EAATVKETLTKHLGINLTVVDASERFLGKLKGITDDPEKKRKVIGNTFIEVFQEEA 332

Query: 106 R--YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           +   A     +       ++    + D +E++  +      +    + G+ +     ++L
Sbjct: 333 KNIAAAAKGFSNEGEIKWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLE----GMHL 388

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     ++++R    Q  I 
Sbjct: 389 KLIEPLRELFKDEVRELGKQLGIP 412


>gi|147677391|ref|YP_001211606.1| tRNA-specific 2-thiouridylase MnmA [Pelotomaculum thermopropionicum
           SI]
 gi|205816885|sp|A5D3F0|MNMA_PELTS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146273488|dbj|BAF59237.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Pelotomaculum thermopropionicum SI]
          Length = 365

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 53/210 (25%), Gaps = 61/210 (29%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYV-- 73
              ++VA+SGG DS      L     +     ++              + E    R    
Sbjct: 3   KTKVVVAMSGGVDSSVTAALLLEQGFEVIGITMQI--------WNPGEEAESKGERTCCS 54

Query: 74  -------SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALI 110
                    V  +L I+H V+++++   +                    A  R  ++  +
Sbjct: 55  LTAIDDARRVADKLGISHYVLNFRSIFEEKVIDYFTSEYLRGRTPNPCIACNRYVKFEAL 114

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--- 167
            + A +I A  I T H              R       G   +   +    +        
Sbjct: 115 LDRALSIGAEYIATGHYA------------RLGYSGEYGRYTVRRPVDRRKDQTYVLYGM 162

Query: 168 ----------PFLRCRREDIRSFLLQRNIS 187
                     P     +  +R       + 
Sbjct: 163 TQRQIARTMMPLGNYTKGQVRKIAEDFGLP 192


>gi|91775492|ref|YP_545248.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Methylobacillus flagellatus KT]
 gi|123254665|sp|Q1H280|GUAA_METFK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91709479|gb|ABE49407.1| GMP synthase (glutamine-hydrolyzing) [Methylobacillus flagellatus
           KT]
          Length = 526

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 27/196 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E+    +R  V    +++ +SGG DS      +H  + D      + + + VD+  LR 
Sbjct: 209 VETAVQRIREEVGCDEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRL 262

Query: 65  TAKDEVRYV-SDVCSRLRIAHSVVSWKNSKPQTG-------LMAAA----REARYALISE 112
               E   V       L +   V+    S    G         A      RE       E
Sbjct: 263 N---EAEQVMETFGKNLGVK--VIHVDASAKFLGDLSGVNDPEAKRKIIGREFVEVFQQE 317

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK   A  +     + D +E+      +      +        +   L L +  P    
Sbjct: 318 AAKLPQAKWLAQGTIYPDVIES---AGAKTKKAHTIKSHHNVGGLPDTLKLKLLEPLREL 374

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   +   +  
Sbjct: 375 FKDEVRELGIALGLPH 390


>gi|87119585|ref|ZP_01075482.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Marinomonas sp. MED121]
 gi|86165061|gb|EAQ66329.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Marinomonas sp. MED121]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+A+SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 221 MREQVGDKQVLLALSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLNEGDQVM 274

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATLI 122
             +     + +    V  ++         A  EA+  +I          E +K      +
Sbjct: 275 --AMFAENMGVKVIRVDAEDLFLSRLKGEADPEAKRKIIGNSFIEIFDEESSKLNEIEFL 332

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+    + +      +        +  D+ + +  P     ++++R   L
Sbjct: 333 AQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMELVEPLRELFKDEVRKLGL 389

Query: 183 QRNISW 188
              + +
Sbjct: 390 ALGLPY 395


>gi|330872844|gb|EGH06993.1| GMP synthase [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     + +   V+     +           P+       R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|322421067|ref|YP_004200290.1| GMP synthase large subunit [Geobacter sp. M18]
 gi|320127454|gb|ADW15014.1| GMP synthase, large subunit [Geobacter sp. M18]
          Length = 516

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 24/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE+    +R  V    +L A+SGG DS  + + +H  + D      +   + V++  L
Sbjct: 204 NFIETEMEEIRRKVGTGKVLCALSGGVDSAVVAVLIHKAIGD------QLHCVFVNNGLL 257

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R+    E   V ++ ++  +I  + V   +         S P+        E  Y    E
Sbjct: 258 RKG---EADKVVNLFTKHFKINLTHVDAADRFLGMLEGISDPEQKRKIIGNEFIYLFEEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+V            +        +   +NL +  P    
Sbjct: 315 AKKLGQVDYLAQGTLYPDVIESV----STKGPSAVIKSHHNVGGLPEKMNLKLLEPVREL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R    +  + 
Sbjct: 371 FKDEVRLLGKELGMP 385


>gi|157961142|ref|YP_001501176.1| GMP synthase [Shewanella pealeana ATCC 700345]
 gi|226739731|sp|A8H254|GUAA_SHEPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157846142|gb|ABV86641.1| GMP synthase, large subunit [Shewanella pealeana ATCC 700345]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  +    +++ +SGG DS  + + LH  + D+       + + VD+  L
Sbjct: 212 SIIEDAIERLKEQIGDDEVILGLSGGVDSSVVAMLLHRAIGDK------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E + V D       +    V  +N         A  EA+  +I           
Sbjct: 266 RLN---EAQQVMDMFGDHFGLNIVHVDAENRFLDAMAGEAEPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K +NA  +     + D +E+    + + +  K          +  D+ + +  P    
Sbjct: 323 SKKCVNAKWLAQGTIYPDVIESAGSATGKAHCIKS---HHNVGGLPDDMAMGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|71737468|ref|YP_273592.1| GMP synthase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257487182|ref|ZP_05641223.1| GMP synthase [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|91206819|sp|Q48LY0|GUAA_PSE14 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71558021|gb|AAZ37232.1| GMP synthase [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320329970|gb|EFW85958.1| GMP synthase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874766|gb|EGH08915.1| GMP synthase [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330985028|gb|EGH83131.1| GMP synthase [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009200|gb|EGH89256.1| GMP synthase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     + +   V+     +           P+       R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|77460808|ref|YP_350315.1| GMP synthase [Pseudomonas fluorescens Pf0-1]
 gi|91206822|sp|Q3K7D0|GUAA_PSEPF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77384811|gb|ABA76324.1| GMP synthase (glutamine-hydrolyzing) [Pseudomonas fluorescens
           Pf0-1]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 31/191 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           +R+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 221 IRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEG---- 270

Query: 70  VRYV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTI 117
              V +     + +   V+           +A             R       +E  K  
Sbjct: 271 -EQVMAMFAENMGVK--VIRANAEDQFLNNLAGEADPEKKRKIIGRTFIDVFDAESCKLD 327

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   +     + D +E+      +      +        +  ++NL +  P     ++++
Sbjct: 328 NIKYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEV 384

Query: 178 RSFLLQRNISW 188
           R   L+  + +
Sbjct: 385 RRLGLELGLPY 395


>gi|295104304|emb|CBL01848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 367

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 60/191 (31%), Gaps = 34/191 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH----CLRET----AKDEVRY 72
           H L+A+SGG DS      +     D +   ++ +     H             ++ ++  
Sbjct: 11  HALIAMSGGVDSSVAACLMQQAGYDCTGITMRLT-----HNETLGQSGYQTCCSEKDIED 65

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKT 116
            ++V   L + + V+ +        +    R                  ++  + + A+ 
Sbjct: 66  AAEVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDWAEE 125

Query: 117 INATLIMTAHTFDDQLETVYM---RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                ++T H    ++E          +   ++G   S +   +  +    I  P     
Sbjct: 126 HGMEYVVTGHYA--RVEQDAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPLGALH 183

Query: 174 REDIRSFLLQR 184
           + ++R    + 
Sbjct: 184 KTEVRKIAQEH 194


>gi|228990440|ref|ZP_04150405.1| hypothetical protein bpmyx0001_12020 [Bacillus pseudomycoides DSM
          12442]
 gi|228996541|ref|ZP_04156180.1| hypothetical protein bmyco0003_11280 [Bacillus mycoides Rock3-17]
 gi|229004191|ref|ZP_04161992.1| hypothetical protein bmyco0002_11560 [Bacillus mycoides Rock1-4]
 gi|228757052|gb|EEM06296.1| hypothetical protein bmyco0002_11560 [Bacillus mycoides Rock1-4]
 gi|228763173|gb|EEM12081.1| hypothetical protein bmyco0003_11280 [Bacillus mycoides Rock3-17]
 gi|228768966|gb|EEM17564.1| hypothetical protein bpmyx0001_12020 [Bacillus pseudomycoides DSM
          12442]
          Length = 223

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAMQQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +D+   L I H+V+ 
Sbjct: 50 CAADIAKELGIKHTVLD 66


>gi|256830263|ref|YP_003158991.1| GMP synthase, large subunit [Desulfomicrobium baculatum DSM 4028]
 gi|256579439|gb|ACU90575.1| GMP synthase, large subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 515

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 20/193 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++S+   +   +    ++  +SGG DS  + + L+  +            I VD+  L
Sbjct: 203 SFVDSMLQALPEQIGDDKVVCGLSGGIDSTVVAVLLNKAIGK------NLHCIFVDNGLL 256

Query: 63  RETAKDEVR-YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---YAL---ISEHAK 115
           R    DEV  Y+      L + +     K      GL    ++ +   Y       E AK
Sbjct: 257 RAGEGDEVIGYLRQH-FDLNLHYIKAQDKFLSRLEGLEDPEQKRKIIGYTFIEVFEEEAK 315

Query: 116 TI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
            I     +     + D +E++  +      +    + G+ +     ++L +  P     +
Sbjct: 316 KIPGVKYLAQGTLYPDVIESISFKGPSAVIKSHHNVGGLPEK----MDLALVEPLRELFK 371

Query: 175 EDIRSFLLQRNIS 187
           +++R    +  + 
Sbjct: 372 DEVRKVAQELGLP 384


>gi|134278032|ref|ZP_01764747.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           305]
 gi|167911465|ref|ZP_02498556.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia pseudomallei 112]
 gi|134251682|gb|EBA51761.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia pseudomallei
           305]
          Length = 539

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 23/197 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCS-RLR--IAHSVVSWK-------NSKPQTGLMAAAREARYALI 110
           L R     E + V D+   RL   + H   S +        + P+       RE      
Sbjct: 259 LLRLN---EGKMVLDMFEGRLHAKVVHVDASEQFLSHLAGVADPEHKRKIIGREFVEVFQ 315

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +E  K  NA  +     + D +E+      +      +        +   L L +  P  
Sbjct: 316 AEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPLR 372

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   +   + 
Sbjct: 373 DLFKDEVRELGVALGLP 389


>gi|326793643|ref|YP_004311463.1| GMP synthase (glutamine-hydrolyzing) [Marinomonas mediterranea
           MMB-1]
 gi|326544407|gb|ADZ89627.1| GMP synthase (glutamine-hydrolyzing) [Marinomonas mediterranea
           MMB-1]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+A+SGG DS  +   LH  + D+       + + VD+ L R    DE  
Sbjct: 221 MREQVGNKKVLLALSGGVDSSVVAALLHKAIGDK------LTCVFVDNGLLR---LDEGD 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V       + +    V  ++         A  E +  +I          E AK  +   
Sbjct: 272 QVMSMFAENMGVNVIRVDAEDLFLGKLAGVADPEQKRKIIGNTFIDIFDEEAAKLTDVDF 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + +      +        +  D+   +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRKLG 388

Query: 182 LQRNISW 188
           ++  +  
Sbjct: 389 VELGLPP 395


>gi|307265916|ref|ZP_07547465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919085|gb|EFN49310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 376

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 65/256 (25%)

Query: 6   IESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE 64
           IES R     S+     ++V +SGG DS      L     +          I V   + +
Sbjct: 2   IESTRRLENLSMQKNNRVVVGMSGGVDSSVAAYLLKEQGYE---------VIGVTMQIWQ 52

Query: 65  TAKDEVRYV-------------SDVCSRLRIAHSVVSWKNSKPQT--------------- 96
              +E   V               V +++ I + V+++K+   +                
Sbjct: 53  DKDEEAVRVEGGCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTP 112

Query: 97  GLMAAAREARYALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMG 149
               A  +  Y    E  K    I+A  + T H      D++     ++   D ++    
Sbjct: 113 NPCIACNK--YIKFEELLKRAWMIDAYYVATGHYAIKEYDEERGRYLLKKSVDTSKDQTY 170

Query: 150 -LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPSNTDD 197
            L  +  T L      I  P  + +++++R       +            +  D  N   
Sbjct: 171 VLYNLTQTQLE----HILFPLGKYKKDEVRKLAQNLGLPVASKPDSQEICFVTD--NDYG 224

Query: 198 RFERVRVRRFVRDIDL 213
           +F R   +  ++  + 
Sbjct: 225 KFIRENAKEEIKPGEF 240


>gi|332827699|gb|EGK00438.1| GMP synthase [Dysgonomonas gadei ATCC BAA-286]
          Length = 506

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S I+S    +++ +    +++A+SGG DS    + L+  +          + + VDH L
Sbjct: 197 SFIDSTVEELKTTLGDDKVILALSGGVDSSVTAVLLNKAIGK------NLTCVFVDHGL 249


>gi|291527010|emb|CBK92596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale M104/1]
          Length = 362

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 36/136 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETA 66
              ++V +SGG DS      L                 +  F + +         L   A
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCC---GLS--A 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALI 110
            ++ R V+ V   L I + V+++K    +                    A  R  ++  +
Sbjct: 57  VEDARRVAAV---LDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESL 113

Query: 111 SEHAKTINATLIMTAH 126
              +  I A  I T H
Sbjct: 114 LHRSLEIGADYIATGH 129


>gi|291526521|emb|CBK92108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale DSM 17629]
          Length = 362

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 36/136 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETA 66
              ++V +SGG DS      L                 +  F + +         L   A
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCC---GLS--A 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALI 110
            ++ R V+ V   L I + V+++K    +                    A  R  ++  +
Sbjct: 57  VEDARRVAAV---LDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESL 113

Query: 111 SEHAKTINATLIMTAH 126
              +  I A  I T H
Sbjct: 114 LHRSLEIGADYIATGH 129


>gi|238922734|ref|YP_002936247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale ATCC 33656]
 gi|238874406|gb|ACR74113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium rectale ATCC 33656]
          Length = 362

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 36/136 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHS------------VLSDRSFGKIKFSAISVDHCLRETA 66
              ++V +SGG DS      L                 +  F + +         L   A
Sbjct: 2   KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCC---GLS--A 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALI 110
            ++ R V+ V   L I + V+++K    +                    A  R  ++  +
Sbjct: 57  VEDARRVAAV---LDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESL 113

Query: 111 SEHAKTINATLIMTAH 126
              +  I A  I T H
Sbjct: 114 LHRSLEIGADYIATGH 129


>gi|212538631|ref|XP_002149471.1| GMP synthase [Penicillium marneffei ATCC 18224]
 gi|210069213|gb|EEA23304.1| GMP synthase [Penicillium marneffei ATCC 18224]
          Length = 542

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 31/196 (15%)

Query: 13  VRSLVYPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +R LV P  +++ A SGG DS      +   + DR      F AI +D+   R    +EV
Sbjct: 224 IRELVGPRALVLGACSGGVDSTVGAKLMREAIGDR------FKAILIDNGFMRLNECEEV 277

Query: 71  RYVSDVCSRLRIAHSVVS-----------WKNSKPQTGL---------MAAAREARYALI 110
           +    +   L I  +VV+             + + +  +            A        
Sbjct: 278 K--KTLEEHLGINLTVVNAGELFMSRLAGVSDPEKKRKIIGSTFIDLFEQEAIRIEKEA- 334

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
              + +      +    + D +E++  R      +    + G+ + ++    L +  P  
Sbjct: 335 ENTSNSGKVEWFLQGTLYPDVIESLSFRGPSATIKTHHNVGGLPERMMNGQGLRLIEPLR 394

Query: 171 RCRREDIRSFLLQRNI 186
              ++++R+   Q  I
Sbjct: 395 LLFKDEVRAIGRQLGI 410


>gi|257059463|ref|YP_003137351.1| PP-loop domain protein [Cyanothece sp. PCC 8802]
 gi|256589629|gb|ACV00516.1| PP-loop domain protein [Cyanothece sp. PCC 8802]
          Length = 274

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 36/197 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +  V+     +      L+A SGG DS  +    + VL DR+   +  +A+    
Sbjct: 1   MIDQKLNQVKTLFSQMEQA---LIAYSGGIDSTLVAKIAYDVLGDRA---LAITAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHS-VVSWKNSKPQ-----TGLMAAAREARYALISEH 113
               +   +E+       + + I H  + + +   P             +   +  +   
Sbjct: 51  --SPSLLPEELEEAKIQAATIGIKHELIETHEMDNPNYTSNPVNRCYFCKSELHDTLKPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A       I+     DD      ++  R          G+           ++   +   
Sbjct: 109 ALKRGYAYIVDGVNADD------LQDYR---------PGIQAAKERGARSPLAE--VGLT 151

Query: 174 REDIRSFLLQRNISWCE 190
           + +IR    Q  + W +
Sbjct: 152 KTEIRQLSQQLGLPWWD 168


>gi|167837010|ref|ZP_02463893.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia thailandensis MSMB43]
          Length = 539

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVSRIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVTDPERKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 372 RDLFKDEVRELGVALGLP 389


>gi|302812430|ref|XP_002987902.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
 gi|300144291|gb|EFJ10976.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii]
          Length = 375

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 46/201 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEVR 71
            + V VSGG DS   L  L       +   IK          +E           +++++
Sbjct: 2   RVAVLVSGGVDSSVALRLLCGAGHSCTAFYIKIW-------FQEDFQNFWSSCPWEEDLK 54

Query: 72  YVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREAR-------------YALISEHAK 115
           Y  DVC  + +   +V   +   +K  +  +   R  R             +    +H  
Sbjct: 55  YAQDVCDEVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHID 114

Query: 116 TINATLIMTAHTF------DDQLETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
                 + + H        D+Q  T+    M S+ +  ++   LS +    L     ++ 
Sbjct: 115 RTKFDRVASGHYARVERYVDEQG-TIRARLMLSKDEVKDQTYFLSQLSQEQL----GFLM 169

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + ++R      N+ 
Sbjct: 170 FPLGSLAKPEVRQLAHSLNLP 190


>gi|227832313|ref|YP_002834020.1| GMP synthase [Corynebacterium aurimucosum ATCC 700975]
 gi|262183830|ref|ZP_06043251.1| GMP synthase [Corynebacterium aurimucosum ATCC 700975]
 gi|227453329|gb|ACP32082.1| GMP synthase [Corynebacterium aurimucosum ATCC 700975]
          Length = 522

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 67/184 (36%), Gaps = 22/184 (11%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR-- 71
            +      +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   +++V   
Sbjct: 218 QIGEEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGEREQVEKD 271

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------R--YALISEHAKTINATLIM 123
           +V+   ++L  A    ++ N         A R+A      R     + +     +A  ++
Sbjct: 272 FVASTGAKLITADEREAFLNKLAGVTEPEAKRKAIGAEFIRSFERAVDQALDGQDAAFLV 331

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+             +        +  D+   +  P     ++++R+   +
Sbjct: 332 QGTLYPDVVES-----GGGDGTANIKSHHNVGGLPDDVEFELVEPLRLLFKDEVRAVGRE 386

Query: 184 RNIS 187
             + 
Sbjct: 387 LGLP 390


>gi|297618568|ref|YP_003706673.1| GMP synthase, large subunit [Methanococcus voltae A3]
 gi|297618628|ref|YP_003706733.1| GMP synthase, large subunit [Methanococcus voltae A3]
 gi|297377545|gb|ADI35700.1| GMP synthase, large subunit [Methanococcus voltae A3]
 gi|297377605|gb|ADI35760.1| GMP synthase, large subunit [Methanococcus voltae A3]
          Length = 310

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 108/317 (34%), Gaps = 54/317 (17%)

Query: 1   MFLS-PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           MF+   IE ++  +         ++A+SGG DS        SVL  ++ G+    A+ VD
Sbjct: 6   MFIEETIEEIKTAI----NGRKTIIALSGGVDSSV-----ASVLVSKAVGE-NLLAVFVD 55

Query: 60  HCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYAL 109
             L R+   +E++ +      + +   VV  K+         + P+       R     +
Sbjct: 56  TGLMRKNETEEIKKIFQ--EEMGVNLKVVYAKDMFLKELAGITDPEEKRKIIGRLF-IEI 112

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             + AK     +++      D +E+           +G   +     +   + L +  P 
Sbjct: 113 FEDVAKENGEEVLIQGTIAPDWIES-----------EGEIKTHHNIALPSGMVLDVVEPI 161

Query: 170 LRCRREDIRSFLLQRNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKM 220
               ++++R   ++  +         D+   R         VR+   + +  L  +  + 
Sbjct: 162 RELYKDEVRQVAVELGLP--------DNVAFRQPFPGPGLAVRILGEITEEKLE-ICKEA 212

Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
                  ++       L   +  V       +  DI + +  +    +    A+      
Sbjct: 213 NAIVSEEIEKEGLDKELWQYFAAVLDTKATGVKGDIRDYNWVVALRFVESLDAMTATAPE 272

Query: 281 LPGYRSMERVMLFLKSG 297
           LP ++ ++R+   + S 
Sbjct: 273 LP-FKIIKRISKRITSE 288


>gi|320322907|gb|EFW78997.1| GMP synthase [Pseudomonas syringae pv. glycinea str. B076]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     + +   V+     +           P+       R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|326791555|ref|YP_004309376.1| argininosuccinate synthase [Clostridium lentocellum DSM 5427]
 gi|326542319|gb|ADZ84178.1| argininosuccinate synthase [Clostridium lentocellum DSM 5427]
          Length = 402

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 54/208 (25%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              +++A SGG D S+        +   +        A+ ++         E+  + +  
Sbjct: 2   KEKVVLAYSGGLDTSV-------IIPWLKENYDYDVIAVCINVGQ----DAELEGLEERA 50

Query: 78  SRLRIAHSVVSWKNSKPQTGLM--------------------AAAREARYALISEHAKTI 117
             + +  S V  +N K +                        + AR      +   A   
Sbjct: 51  LSMGV--SKVYVENVKDEFMREYVFPMIQSGAIYESKYYLGTSIARAVIAKTLVNVALKE 108

Query: 118 NATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  I    T   +DQ+     R +   A     L  +    ++D++           RE
Sbjct: 109 GAVAICHGCTGKGNDQI-----RFELGIAALAPHLKVIAPWRIWDIS----------SRE 153

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVR 203
           +   +L +R +     P   +D + R R
Sbjct: 154 EEIEYLEKRGLPV---PMKKEDSYSRDR 178


>gi|298491152|ref|YP_003721329.1| queuosine synthesis-like protein ['Nostoc azollae' 0708]
 gi|298233070|gb|ADI64206.1| Queuosine synthesis-like protein ['Nostoc azollae' 0708]
          Length = 273

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 60/196 (30%), Gaps = 40/196 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E V+     +      L+A SGG DS  +    + +L DR+   +  +A+       
Sbjct: 5   EKLEQVKHLFVEMGQA---LIAYSGGVDSTLVAKIAYDLLGDRA---LAVTAV------S 52

Query: 64  ET-AKDEVRYVSDVCSRLRIAHSVV------SWKNSKPQTGLMAAAREARYALISEHAKT 116
            +   +E+   +   + + IAH +V      +   +          +   +  ++     
Sbjct: 53  PSLLPEELADATAQAATIGIAHKIVQSHEMENLNYTSNPINRCYFCKSELHDTLNPLVLE 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRR 174
           +  + ++     DD                   L      I          P   +   +
Sbjct: 113 LGYSYVVDGVNADD-------------------LHDYRPGIQAAKERGARSPLAEIGVTK 153

Query: 175 EDIRSFLLQRNISWCE 190
            ++R    Q  + W +
Sbjct: 154 AEVRQLSQQLGLPWWD 169


>gi|332529592|ref|ZP_08405548.1| tRNA-specific 2-thiouridylase MnmA [Hylemonella gracilis ATCC
           19624]
 gi|332040942|gb|EGI77312.1| tRNA-specific 2-thiouridylase MnmA [Hylemonella gracilis ATCC
           19624]
          Length = 386

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 50/201 (24%), Gaps = 46/201 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     D     +K               D+  Y     
Sbjct: 6   RGQRVVVGLSGGVDSAVTAYLLKKQGHDVVGIFMKNW----------EDDDDNEYCSSNV 55

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + I    V++             RE +                     +
Sbjct: 56  DFVDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLD 115

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WIS 166
           HA  + A  I T H        V +  +    E   GL    D   +   L         
Sbjct: 116 HAMRLGAEKIATGHYAR-----VRLNEKTGKHELLKGLDPSKDQSYFLHRLNQAQLSKTL 170

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + ++R    +  + 
Sbjct: 171 FPVGELHKTEVRRIAAEIGLP 191


>gi|288941240|ref|YP_003443480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Allochromatium vinosum DSM 180]
 gi|288896612|gb|ADC62448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Allochromatium vinosum DSM 180]
          Length = 371

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 58/198 (29%), Gaps = 47/198 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD-----------RSFGKIKFSAISVDHCLRETAKDE 69
            ++V +SGG DS    IA H +L                   +             A ++
Sbjct: 12  RVIVGLSGGVDS---AIAAHRLLEQGYAVEALFMKNWEEDDAEGYCA---------AAED 59

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
           +     V  RL I    V+     W            A           RE ++A   +H
Sbjct: 60  LADARAVAERLGIRLHTVNFSAEYWDRVFEYFLREYQALRTPNPDVLCNREIKFAAFLDH 119

Query: 114 AKTINATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A  + A  I T H      D Q      R+     ++   L  +    L         P 
Sbjct: 120 ALGLGAEAIATGHYARVVADAQGGYHLHRAVDADKDQTYFLHLLDQEQLSRA----LFPL 175

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R+   +  ++
Sbjct: 176 ADLTKGEVRALARRLGLA 193


>gi|237800059|ref|ZP_04588520.1| GMP synthase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806388|ref|ZP_04593092.1| GMP synthase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022914|gb|EGI02971.1| GMP synthase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027501|gb|EGI07556.1| GMP synthase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     + +   V+     +           P+       R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|134045741|ref|YP_001097227.1| GMP synthase subunit B [Methanococcus maripaludis C5]
 gi|132663366|gb|ABO35012.1| GMP synthase (glutamine-hydrolyzing) [Methanococcus maripaludis C5]
          Length = 310

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 75/199 (37%), Gaps = 32/199 (16%)

Query: 1   MFLS--PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF +   IE     +R  +     ++A+SGG DS     A+ +VL+D++ G  K  A+ V
Sbjct: 1   MFKTEPFIEESIEEIRKQINNRKTIIALSGGVDS-----AVAAVLTDKAIGD-KLLAVYV 54

Query: 59  DHCL-RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYA 108
           D  L R+   +E+  +     ++ +   +V  K+           P+       R     
Sbjct: 55  DTGLMRKNESEEIWKIFK--EQMGLNLKIVEAKDIFLKELEGVIDPEEKRKIIGRLF-IE 111

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +  + A+     +++      D +E+           +G   +     +   + L +  P
Sbjct: 112 VFEKVAEEQGEEVLVQGTIAPDWIES-----------EGQIKTHHNIALPGGMVLDVVEP 160

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R   +   + 
Sbjct: 161 LRELYKDEVRLLAVALGLP 179


>gi|330950770|gb|EGH51030.1| GMP synthase [Pseudomonas syringae Cit 7]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
            V +     + +   V+     +     +A             R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLAGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|282896191|ref|ZP_06304214.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Raphidiopsis brookii D9]
 gi|281198880|gb|EFA73758.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Raphidiopsis brookii D9]
          Length = 350

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 60/203 (29%), Gaps = 57/203 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIK----FSAISVDHCLRETA 66
             ++V +SGG DS      LH+         +   +  G+        A ++        
Sbjct: 3   KKVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLMKGKGQCCSEGMVDAATI-------- 54

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN-----------SKPQTGL----MAAA-REARYA-L 109
                     C +L I H +V  ++           S    G+     +   R  ++  +
Sbjct: 55  ----------CQQLDIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPM 104

Query: 110 ISEHAKTINATLIMTAHTF----DDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           +      + +  I T H      D + E    +R+     ++   L  +   +L      
Sbjct: 105 LQYAKDKLQSDTIATGHYARIAYDHRTERYQLLRAFDRNKDQSYFLYDLSQELLAGT--- 161

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
              P     + D R    +  + 
Sbjct: 162 -IFPLGELNKNDTRKIASEYGLK 183


>gi|198437911|ref|XP_002122274.1| PREDICTED: similar to UPF0432 protein C16orf84 homolog B [Ciona
           intestinalis]
          Length = 432

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 61/198 (30%), Gaps = 28/198 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISVDHC-LRETAKDE-VRYV 73
           +   + +A SGG++S  LL  +   L   +  K+KF+   I VD   L  +   E V+ +
Sbjct: 65  HHDKVALAYSGGNNSSALLNLIKKGLDPATVKKLKFTPGLIFVDERILYPSDDYEKVKEI 124

Query: 74  SDVCSRLRIAHSVVSWKNSKPQ-----------------------TGLMAAAREARYALI 110
            ++       + +V  +                            T         R  L+
Sbjct: 125 EEIMRNTGFPYHIVKLEEVFSTEDTDEKMTNAEKLEKLFNSITTLTSKQETLYRLRCYLL 184

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPF 169
           S  AK +    +    T       +               +G  D + ++   + + RP 
Sbjct: 185 SRKAKELGYDHVFMGETSTRLAINILSNFSLGRGVHLPQDTGFSDGLRFEGVGVKLLRPM 244

Query: 170 LRCRREDIRSFLLQRNIS 187
                ++I  +     + 
Sbjct: 245 REMSMKEIAVYNALNKVP 262


>gi|15643286|ref|NP_228330.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga maritima MSB8]
 gi|8134745|sp|Q9WYZ0|MNMA_THEMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|4981033|gb|AAD35605.1|AE001728_6 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga maritima MSB8]
          Length = 358

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 42/198 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIK------------FSAISVDHCLRETAKD 68
            + VA+SGG DS   L  L     +     +K               +        +   
Sbjct: 2   KVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIKKEIKKKVCC----SPSDTA 57

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RYALISEHAK 115
           +   ++     L +   +V  K    +  +    R+              R+        
Sbjct: 58  DAMRIAHF---LGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMD 114

Query: 116 ---TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISRP 168
                      + H    ++E    +  R   +KG+ L       L  +  W    +  P
Sbjct: 115 YVLNQGFDAFASGHYA--RIE-FSEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFP 171

Query: 169 FLRCRREDIRSFLLQRNI 186
                +E+IR    +  I
Sbjct: 172 NGIYTKEEIRKIAEEAGI 189


>gi|332306349|ref|YP_004434200.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173678|gb|AEE22932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 377

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 49/200 (24%), Gaps = 51/200 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A ++++ 
Sbjct: 18  KKVIVGMSGGVDSSVSAYILLQQGYQVEGLFMK--------NWEEDDNDEYCAAAEDLKD 69

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              V  +L I    +++                +  R               A +   A+
Sbjct: 70  AQAVADKLGIELHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFKAFLEFAAE 129

Query: 116 TINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            + A  I T H                    +  R   +       +       +   + 
Sbjct: 130 ELEADYIATGHYVRRREVDGH---------WQMLRGMDDNKDQSYFLYTLGEQHVGQTLF 180

Query: 167 RPFLRCRREDIRSFLLQRNI 186
            P     +  +R    ++ +
Sbjct: 181 -PIGDIEKPQVREIAQEQGL 199


>gi|330957542|gb|EGH57802.1| GMP synthase [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     + +   V+     +           P+       R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|313889383|ref|ZP_07823031.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122215|gb|EFR45306.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
               +  +  +    V  K+           P+        E  Y    E +K      +
Sbjct: 273 --GMLGGKFGLNIIRVDAKDRFLDLLAGVDDPEKKRKIIGNEFVYVFDDEASKLKGVDFL 330

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R   +
Sbjct: 331 AQGTLYTDIIE------SGTETAETIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRELGI 384

Query: 183 QRN----ISWC 189
                  I W 
Sbjct: 385 ALGMPENIVWR 395


>gi|298529215|ref|ZP_07016618.1| asparagine synthase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510651|gb|EFI34554.1| asparagine synthase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 260

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 17/107 (15%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV--DH 60
           ++P + +R   + L+  + + +A+SGG DS  L               I+F+A +   DH
Sbjct: 1   MNPTDRLR---KHLLSLSPLAIALSGGVDSSTLTFFCLE-------NHIEFTAYTFCGDH 50

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY 107
                   E  +V  V +   I H  +  +  K    + A +RE  Y
Sbjct: 51  LTS----FEAEHVQKVVTENSIPHLFIPCQPLKDPK-IAANSRERCY 92


>gi|251794871|ref|YP_003009602.1| GMP synthase, large subunit [Paenibacillus sp. JDR-2]
 gi|247542497|gb|ACS99515.1| GMP synthase, large subunit [Paenibacillus sp. JDR-2]
          Length = 511

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 30/188 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L  +SGG DS  + + +H  + D      + + + +DH  LR   KDE  
Sbjct: 210 IRNQVGDRKVLCGLSGGVDSSVVAMLIHKAIGD------QLTCMFIDHGMLR---KDEAE 260

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V      +  +   VV    S+           P+        E  Y    E AK    
Sbjct: 261 SVMETFVGKFDMK--VVKIDASERFLGKLKGVTDPEQKRKIIGNEFIYVFDEESAKLGEF 318

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E            + +        +  D+   +  P     ++++R 
Sbjct: 319 DFLAQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMKFELVEPLKTLFKDEVRK 372

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 373 VGAECGLP 380


>gi|83719399|ref|YP_442582.1| GMP synthase [Burkholderia thailandensis E264]
 gi|83653224|gb|ABC37287.1| GMP synthase [Burkholderia thailandensis E264]
          Length = 599

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 25/198 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 265 MRDHIEEAVARIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 318

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 319 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVADPEHKRKIIGREFVEVF 374

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 375 QAEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 431

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 432 RDLFKDEVRELGVALGLP 449


>gi|332523340|ref|ZP_08399592.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314604|gb|EGJ27589.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
               +  +  +    V  K+           P+        E  Y    E +K      +
Sbjct: 273 --GMLGGKFGLNIIRVDAKDRFLDLLANVDDPEKKRKIIGNEFVYVFDDEASKLKGVDFL 330

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R   +
Sbjct: 331 AQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRELGI 384

Query: 183 QRN----ISWC 189
                  I W 
Sbjct: 385 ALGMPENIVWR 395


>gi|312871416|ref|ZP_07731511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 3008A-a]
 gi|311093069|gb|EFQ51418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 3008A-a]
          Length = 375

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 45/197 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGVC-------TATEDFEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++                  R          E ++    + A  ++
Sbjct: 61  RVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLD 120

Query: 119 ATLIMTAHTFDDQLETV--------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A  I   H      +TV         MR +    ++   LS +    L         P  
Sbjct: 121 ADYIAMGH----YAKTVTDKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKA----IFPLA 172

Query: 171 RCRREDIRSFLLQRNIS 187
              +  +R    Q  ++
Sbjct: 173 DLSKPQVRMIAEQAGLA 189


>gi|312872357|ref|ZP_07732427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311092180|gb|EFQ50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 375

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 45/197 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGVC-------TATEDFEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++                  R          E ++    + A  ++
Sbjct: 61  RVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLD 120

Query: 119 ATLIMTAHTFDDQLETV--------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A  I   H      +TV         MR +    ++   LS +    L         P  
Sbjct: 121 ADYIAMGH----YAKTVTDKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKA----IFPLA 172

Query: 171 RCRREDIRSFLLQRNIS 187
              +  +R    Q  ++
Sbjct: 173 DLSKPQVRMIAEQAGLA 189


>gi|309805355|ref|ZP_07699405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165355|gb|EFO67588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus iners LactinV 09V1-c]
          Length = 375

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 45/197 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDSGVC-------TATEDFEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V  ++ I +  ++++                  R          E ++    + A  ++
Sbjct: 61  RVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLD 120

Query: 119 ATLIMTAHTFDDQLETV--------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A  I   H      +TV         MR +    ++   LS +    L         P  
Sbjct: 121 ADYIAMGH----YAKTVTDKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKA----IFPLA 172

Query: 171 RCRREDIRSFLLQRNIS 187
              +  +R    Q  ++
Sbjct: 173 DLSKPQVRMIAEQAGLA 189


>gi|222153042|ref|YP_002562219.1| GMP synthase [Streptococcus uberis 0140J]
 gi|254800119|sp|B9DUB2|GUAA_STRU0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|222113855|emb|CAR41980.1| GMP synthase [glutamine-hydrolyzing] [Streptococcus uberis 0140J]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 28/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
               +  +  +    V  K+           P+        E  Y    E +K      +
Sbjct: 273 --GMLGGKFGLNIIRVDAKDRFLELLAGVDDPEKKRKIIGNEFVYVFDDEASKLKGVDFL 330

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R   +
Sbjct: 331 AQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFQLIEPLNTLFKDEVRELGI 384

Query: 183 QRN----ISWC 189
                  I W 
Sbjct: 385 ALGMPENIVWR 395


>gi|20094193|ref|NP_614040.1| ATPase [Methanopyrus kandleri AV19]
 gi|19887215|gb|AAM01970.1| Predicted ATPase of the PP-loop superfamily implicated in cell
           cycle control [Methanopyrus kandleri AV19]
          Length = 334

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 51/178 (28%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH------CLRETAKDEVRYVSDVC 77
           +A+SGG DS+       +++       +K  A++V H      CL E A+    +V    
Sbjct: 8   IALSGGKDSVA------TLIDAADRWNVKV-AVTVVHEFTDKTCL-ENARKAAEHV---- 55

Query: 78  SRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
               + H VV         +  K    +      +        A+ +    ++T H    
Sbjct: 56  ---GVDHEVVKLRLREWFARALKEGRPICTKCGRSVLTAACLRARELGCATVLTGHEL-- 110

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR---EDIRSFLLQRN 185
                             G  G   T  Y   + + R +   RR   EDIR  +    
Sbjct: 111 -----------------RGKFGRRTTHPYPPGVTVVR-YPALRRWTWEDIRDIVSSLG 150


>gi|291400046|ref|XP_002716320.1| PREDICTED: guanine monophosphate synthetase [Oryctolagus cuniculus]
          Length = 713

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L     +R+  + +  A+ +D+   R   K E +
Sbjct: 250 IKERVGMSKVLVLLSGGVDSTVCTALL-----NRALNQDQVIAVHIDNGFMR---KRESQ 301

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 302 SVEEALKKLGIQVKVINAAHS 322


>gi|148244833|ref|YP_001219527.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166235089|sp|A5CW80|MNMA_VESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146326660|dbj|BAF61803.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 362

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 35/139 (25%)

Query: 13  VRSLVYPAHILVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----- 65
           +++L     I+V +SGG DS    LL+       +  F K             E      
Sbjct: 1   MKNLNKNTKIIVGLSGGVDSSVTALLLLKQGYQVEALFMK----------NWEEDDKGRY 50

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------Y 107
             AK ++    ++ ++L I    +++         T  +   ++ R             +
Sbjct: 51  CSAKQDLSDAQNITNKLSIKLHTINFSVDYWNDVFTHFLKEYKKGRTPNPDILCNQKIKF 110

Query: 108 ALISEHAKTINATLIMTAH 126
               +HA ++ A  I T H
Sbjct: 111 GAFLKHAISLGADKIATGH 129


>gi|147921307|ref|YP_684879.1| succinoglycan biosynthesis regulator [uncultured methanogenic
           archaeon RC-I]
 gi|110620275|emb|CAJ35553.1| succinoglycan biosynthesis regulator [uncultured methanogenic
           archaeon RC-I]
          Length = 222

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +S G DS+       +   +     +   AI+ D+  R  +K E+     +C+R  + H 
Sbjct: 2   LSSGLDSVV------AFKKEHDEHGVAL-AITFDYGQRAASK-EIEMARQICARYHVRHE 53

Query: 86  VVSWKNSKPQTGLMAAAREA 105
           V+     K  T     +R+A
Sbjct: 54  VIELPWLKQITRTALVSRQA 73


>gi|74316869|ref|YP_314609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiobacillus denitrificans ATCC 25259]
 gi|123612137|sp|Q3SKH7|MNMA_THIDA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|74056364|gb|AAZ96804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thiobacillus denitrificans ATCC 25259]
          Length = 358

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS      L     D      +++     +    +HC   TA+ +   V 
Sbjct: 4   RVVVGLSGGVDSAVAAYLLKQQGYDVLGVFMKNWDDDDNT----EHC---TARQDFLDVL 56

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V   L I    V++     +           A R          E ++    + A    
Sbjct: 57  AVADVLGIEVEAVNFAAEYKERVFSYFLAEYQAGRTPNPDVLCNAEIKFKAFLDDAIARG 116

Query: 119 ATLIMTAHTFDDQLETV----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I T H      +T      +R++    ++   L  +    L         P  R  +
Sbjct: 117 ADYIATGHYVGKGHDTFGRAALLRARDANKDQSYFLYRLNQAQLSPA----LFPLARLPK 172

Query: 175 EDIRSFLLQRNIS 187
            ++R    +  + 
Sbjct: 173 PEVREIARRIGLP 185


>gi|54022864|ref|YP_117106.1| GMP synthase [Nocardia farcinica IFM 10152]
 gi|81375915|sp|Q5Z1E9|GUAA_NOCFA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54014372|dbj|BAD55742.1| putative GMP synthase [Nocardia farcinica IFM 10152]
          Length = 524

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 30/194 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   +++V+
Sbjct: 210 VRAQVGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGEREQVQ 263

Query: 72  --YVSDVCSRL--------------RI--AHSVVSWKNSKPQTGLMAAAREARYALISEH 113
             +V+   ++L               +            +       A R+      +  
Sbjct: 264 QDFVASTGAKLVTVDAVDKFLGELKGVTDPEEKRKIIGREFIRSFEDAVRQIVDEQGAAE 323

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K      ++    + D +E+             +        +  DL   +  P     
Sbjct: 324 GKQPEVEFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLEFELVEPLRLLF 378

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 379 KDEVRAVGRELGLP 392


>gi|158337547|ref|YP_001518722.1| GMP synthase [Acaryochloris marina MBIC11017]
 gi|158307788|gb|ABW29405.1| GMP synthase [Acaryochloris marina MBIC11017]
          Length = 541

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45
           E++R  VR+ V    +L+A+SGG DS  L   LH  + D
Sbjct: 226 EAIRE-VRAKVGNKRVLLALSGGVDSSTLAFLLHKAIGD 263


>gi|221069865|ref|ZP_03545970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Comamonas testosteroni KF-1]
 gi|220714888|gb|EED70256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Comamonas testosteroni KF-1]
          Length = 376

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 52/202 (25%), Gaps = 44/202 (21%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L     +     +K               D+  Y   
Sbjct: 1   MSNKQRVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNW----------EDDDDSEYCSS 50

Query: 74  -------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALI 110
                  + V   + I    V++             RE +                    
Sbjct: 51  NIDFVDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAF 110

Query: 111 SEHAKTINATLIMTAH----TFDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            +HA  + A  I T H      +   +    ++   +  ++   L  +    L       
Sbjct: 111 LDHAMRLGAEKIATGHYARVRQNPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMF-- 168

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     + ++R    +  + 
Sbjct: 169 --PVGELHKTEVRRIAEEIGLP 188


>gi|254252086|ref|ZP_04945404.1| GMP synthase PP-ATPase subunit [Burkholderia dolosa AUO158]
 gi|124894695|gb|EAY68575.1| GMP synthase PP-ATPase subunit [Burkholderia dolosa AUO158]
          Length = 539

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 25/199 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGRLAGVADPEAKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K   A  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLSKAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNISW 188
               ++++R   +   +  
Sbjct: 372 RDLFKDEVRELGVALGLPP 390


>gi|319762648|ref|YP_004126585.1| gmp synthase, large subunit [Alicycliphilus denitrificans BC]
 gi|330824738|ref|YP_004388041.1| GMP synthase, large subunit [Alicycliphilus denitrificans K601]
 gi|317117209|gb|ADU99697.1| GMP synthase, large subunit [Alicycliphilus denitrificans BC]
 gi|329310110|gb|AEB84525.1| GMP synthase, large subunit [Alicycliphilus denitrificans K601]
          Length = 538

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I      +R+ V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 209 MKDHIAEAVEAIRAQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 262

Query: 62  L 62
           L
Sbjct: 263 L 263


>gi|298387127|ref|ZP_06996681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
 gi|298260277|gb|EFI03147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 1_1_14]
          Length = 369

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 34/187 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS    + L     + +    +F  +         + + +     +  R
Sbjct: 5   KRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYEL-------NDSTEYLEDARHLAER 57

Query: 80  LRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLIM 123
           L I H     +    +  +    RE                 ++ L+S+ A  +    I 
Sbjct: 58  LGIRHITYDAREIFRKQIIEYFVREYMVGHTPVPCTLCNNYLKWPLLSKIADEMGIFYIA 117

Query: 124 TAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           T H       DD        +     ++   L G+   IL  +      P     + + R
Sbjct: 118 TGHYVRKVKVDDTC--YITYAADSDKDQTFFLWGLKQDILRRM----LLPMGDITKVEAR 171

Query: 179 SFLLQRN 185
            F  +R 
Sbjct: 172 VFAAERG 178


>gi|289626139|ref|ZP_06459093.1| GMP synthase [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289649045|ref|ZP_06480388.1| GMP synthase [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330869563|gb|EGH04272.1| GMP synthase [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 525

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     + +   V+     +           P+       R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|186685498|ref|YP_001868694.1| tRNA-specific 2-thiouridylase MnmA [Nostoc punctiforme PCC 73102]
 gi|205816898|sp|B2J5L9|MNMA_NOSP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|186467950|gb|ACC83751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nostoc punctiforme PCC 73102]
          Length = 351

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 58/202 (28%), Gaps = 55/202 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
             ++V +SGG DS      LH          +   +  G+             E   D  
Sbjct: 2   KKVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLMKGKGQCC----------SEGMID-- 49

Query: 71  RYVSDVCSRLRIAHSVVSWKN-----------SKPQTGL----MAAARE-------ARYA 108
              +D+C +L + H +V  ++           +    G+     +   +        +YA
Sbjct: 50  --AADLCEQLGVPHQIVDIRDLFQTHIVDYLVTGYSAGITPLPCSQCNKTVKFGPMVQYA 107

Query: 109 LISEHAKTINATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
                 + +    I T H      D+  T   +  R           + D +  DL    
Sbjct: 108 -----REELGCDRIATGHYARISYDEA-TGRYQLLRAIDRNKDQSYFLYD-LSQDLLAAT 160

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     + D R    +  + 
Sbjct: 161 IFPLGELEKTDTRRIATEYGLK 182


>gi|194476897|ref|YP_002049076.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Paulinella chromatophora]
 gi|171191904|gb|ACB42866.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Paulinella chromatophora]
          Length = 527

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE     +R+ V    +L+A+SGG DS  L   LH  + +      + + + +D    R+
Sbjct: 210 IEEAMDQIRTQVGTKRVLLALSGGVDSSTLAFLLHKTIRN------QLTCMFIDQGFMRK 263

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAK 115
               E  ++ D   R   L++ +     +  +   G+     + R        +  E +K
Sbjct: 264 G---EPEFLMDFFDRKFNLKVQYINARERFIEKLRGIFDPEEKRRIIGTEFIRVFEEESK 320

Query: 116 TIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGM---GLSGMCDTILYDLNLWISRPFLR 171
            +     +     + D +E+          E+             +  DL   +  P  R
Sbjct: 321 LLGPFDYLAQGTLYPDVIESAGTNLDPKTGERVAVKIKSHHNVGGLPKDLQFKLVEPLRR 380

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R       + 
Sbjct: 381 LFKDEVRRVGRSLGLP 396


>gi|116074322|ref|ZP_01471584.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. RS9916]
 gi|116069627|gb|EAU75379.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. RS9916]
          Length = 528

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           IE     VR  V    +L+A+SGG DS  L   L   + D+
Sbjct: 211 IEEAVALVRDQVGDKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|119719071|ref|YP_919566.1| phosphoadenosine phosphosulfate reductase [Thermofilum pendens Hrk
           5]
 gi|119524191|gb|ABL77563.1| phosphoadenosine phosphosulfate reductase [Thermofilum pendens Hrk
           5]
          Length = 353

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 30/174 (17%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC--LRETAKDEVRYVSDVCSRLRIA 83
           +SGG DS   L  L  +     F   K +A+ V H   L     + + +   V SRL + 
Sbjct: 95  LSGGKDSTANLYLLTKLQEIVGF---KVTAVYV-HMPYLEPV--ENIAFAEKVASRLGVD 148

Query: 84  HSVVSWKNSKPQTGLMAAA---REARY------ALISEHAKTINATLIMTAHTFDDQLET 134
             +V     K +  L+      R  R+        + E  K I A +         + E 
Sbjct: 149 LRIVEPDRRKLEFYLLREGLPKRGDRWCTYLKTRALREAKKEIGAEVEA-------KAER 201

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
                  +  ++   LSG+    +Y  N  +          ++   + +  +  
Sbjct: 202 AL-----EAGKRYERLSGLAKRKVY-FNGGVVNLVHDLSAAEVAGIVRRAGLVH 249


>gi|42557756|emb|CAF28730.1| putative GMP synthetase [uncultured crenarchaeote]
          Length = 510

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +RS V    +L A+SGG DS  L + L+  +S         + + V++  LR+   DE  
Sbjct: 207 IRSKVQEDRVLCAISGGIDSTTLAVLLNKAISK------NLACVFVNNGLLRQ---DEET 257

Query: 72  YV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATL 121
            V   +   L I    +  +            P+        E     +           
Sbjct: 258 LVPELISKHLGIDTITIDAEQRFLSRLNGITDPEQKRKIIGEEFAQVFLKVTKDYGPFQW 317

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+ + +      +    + G+ D +    NL +  PF    ++++R   
Sbjct: 318 LAQGTLYPDVIESGFSKGPAAVIKTHHNVGGLPDWL----NLKVLEPFRSLYKDEVRKIA 373

Query: 182 LQRNIS 187
           L  +I 
Sbjct: 374 LLLDIP 379


>gi|310780052|ref|YP_003968384.1| preQ(0) biosynthesis protein QueC [Ilyobacter polytropus DSM
          2926]
 gi|309749375|gb|ADO84036.1| preQ(0) biosynthesis protein QueC [Ilyobacter polytropus DSM
          2926]
          Length = 222

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +LV  SGG DS  LL       + + F   +  A+S ++   +    E++   D+C +  
Sbjct: 11 VLV-FSGGQDSSTLLF-----WAKKKFK--EVIALSFNYG--QKHDLELQCAKDICKKYD 60

Query: 82 IAHSVVS 88
          + H ++ 
Sbjct: 61 VEHHILD 67


>gi|291222319|ref|XP_002731165.1| PREDICTED: guanine monophosphate synthetase-like [Saccoglossus
           kowalevskii]
          Length = 578

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +RS+V    +L  VSGG DS      LH  L +      +  A+ +D+   R+    E +
Sbjct: 122 IRSVVGDHKVLALVSGGVDSTVCAALLHKALDNS-----QVIAVHIDNGFMRKN---ESQ 173

Query: 72  YVSDVCSRLRIAHS 85
            V++  S L +   
Sbjct: 174 SVAESLSELGLKLK 187


>gi|156741716|ref|YP_001431845.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus castenholzii DSM
           13941]
 gi|156233044|gb|ABU57827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseiflexus castenholzii DSM 13941]
          Length = 383

 Score = 45.7 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 37/146 (25%)

Query: 9   VRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           V  F   ++ P A I++A+SGG DS      LH    D        + +++   L E   
Sbjct: 2   VTAFCSEVIIPMAKIMIAMSGGVDSSLAAALLHEAGHD-------VTGVTLH--LWEGDD 52

Query: 68  DEVRY-----------VSDVCSRLRIAHSVVSWKNSKPQTGLM----------------A 100
           D +                VC++L I + V +++    ++ +                  
Sbjct: 53  DRLAESLCCSQEMTESARRVCAQLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLE 112

Query: 101 AAREARYALISEHAKTINATLIMTAH 126
             RE ++  +   A+ +    + T H
Sbjct: 113 CNREIKFRALLARARALGFDYVATGH 138


>gi|304386260|ref|ZP_07368593.1| GMP synthase [Pediococcus acidilactici DSM 20284]
 gi|304327617|gb|EFL94844.1| GMP synthase [Pediococcus acidilactici DSM 20284]
          Length = 520

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L+  + D      +   I VDH L
Sbjct: 219 IREEVGDRKVLLGLSGGVDSSVVGVLLNKAIGD------QLVCIFVDHGL 262


>gi|297569866|ref|YP_003691210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925781|gb|ADH86591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 358

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 38/197 (19%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           ++ +Y   + VA+SGG DS      +    ++     ++ +        +   +D  R V
Sbjct: 5   KTSLYQKRVAVAMSGGVDSSVTAALMLQAGAEVEGVFMRLA--------QPGIEDHQRRV 56

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM--AAA--------------REARYALISEHAKTI 117
             V + L I  +V+       Q  L    AA              R+ ++ L+ E   + 
Sbjct: 57  EGVAAHLGIPLTVLDLAEPFGQKVLQPFVAAYLAGLTPNPCVFCNRQIKFGLLLEAMLSR 116

Query: 118 NATLIMTAHTFD-------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
               + T H          D+L        R    +      +C  +  ++   I  P  
Sbjct: 117 GVDFLATGHYVRLTPALPLDRL------LCRGLDPRKDQSYFLCR-LKREVLPRILFPLG 169

Query: 171 RCRREDIRSFLLQRNIS 187
             R+ ++        +S
Sbjct: 170 EKRKTEVYELAASLGLS 186


>gi|270290741|ref|ZP_06196965.1| GMP synthase [Pediococcus acidilactici 7_4]
 gi|270280801|gb|EFA26635.1| GMP synthase [Pediococcus acidilactici 7_4]
          Length = 517

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L+  + D      +   I VDH L
Sbjct: 216 IREEVGDRKVLLGLSGGVDSSVVGVLLNKAIGD------QLVCIFVDHGL 259


>gi|229084430|ref|ZP_04216710.1| hypothetical protein bcere0022_10700 [Bacillus cereus Rock3-44]
 gi|228698970|gb|EEL51675.1| hypothetical protein bcere0022_10700 [Bacillus cereus Rock3-44]
          Length = 220

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ ++  R   K E+   +D+   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAMQQFA--------EVEAVTFNYNQRH--KLEIDCAADIAKEL 55

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 56 GIKHTVLD 63


>gi|221632638|ref|YP_002521859.1| hypothetical protein trd_0620 [Thermomicrobium roseum DSM 5159]
 gi|221155552|gb|ACM04679.1| conserved hypothetical protein TIGR00268 [Thermomicrobium roseum
           DSM 5159]
          Length = 279

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 76/272 (27%), Gaps = 48/272 (17%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     +     +  L     ++VA S G DS  LL A    L DR        A +   
Sbjct: 1   MLEELHDKYERLLERLRRLGSVVVAFSAGVDSTFLLYAAREALGDR------VIAAT--- 51

Query: 61  CLRE-TAKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQTGLMAAAR-----EARYALISEH 113
            L E   ++E+     +   L + H  + + + + P+    +  R     +  Y+ +   
Sbjct: 52  GLSETYPEEEIEEARQLARELGVHHMLIRTEELTDPRYASNSHQRCFFCKQELYSKLRAL 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           A       ++     DD                   L+     +     L +  P   + 
Sbjct: 112 ADAAGFAAVIDGTNADD-------------------LADYRPGLRAARQLGVYHPLAEVG 152

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             + +IR       +   +        +        +     +   + ++K + +     
Sbjct: 153 LTKREIRELSRHFGLRTWD-----KPAYA------CLSSRFPYGTPITVEKLRQVAAAER 201

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTL 263
               +    +   H   I  +     +    L
Sbjct: 202 ALRELGFRAFRVRHHDQIARLELQPEDFPRAL 233


>gi|254369376|ref|ZP_04985388.1| GMP synthase [Francisella tularensis subsp. holarctica FSC022]
 gi|157122326|gb|EDO66466.1| GMP synthase [Francisella tularensis subsp. holarctica FSC022]
          Length = 516

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 212 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGDQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 266 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|254372829|ref|ZP_04988318.1| GMP synthetase [Francisella tularensis subsp. novicida GA99-3549]
 gi|151570556|gb|EDN36210.1| GMP synthetase [Francisella novicida GA99-3549]
          Length = 516

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 212 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGDQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 266 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|134301919|ref|YP_001121888.1| GMP synthase [Francisella tularensis subsp. tularensis WY96-3418]
 gi|226739624|sp|A4IXW6|GUAA_FRATW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|134049696|gb|ABO46767.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 516

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 212 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGDQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 266 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|115314848|ref|YP_763571.1| GMP synthase [Francisella tularensis subsp. holarctica OSU18]
 gi|156502497|ref|YP_001428562.1| GMP synthase [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|290953829|ref|ZP_06558450.1| GMP synthase [Francisella tularensis subsp. holarctica URFT1]
 gi|295312840|ref|ZP_06803572.1| GMP synthase [Francisella tularensis subsp. holarctica URFT1]
 gi|122325137|sp|Q0BLV0|GUAA_FRATO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739621|sp|A7NCA3|GUAA_FRATF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115129747|gb|ABI82934.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253100|gb|ABU61606.1| GMP synthase(glutamine-hydrolyzing) protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 516

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 212 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGDQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 266 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|62261326|gb|AAX77978.1| unknown protein [synthetic construct]
          Length = 551

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 238 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGDQVM 291

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 292 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 349

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 350 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 406

Query: 183 QRNISW 188
              + +
Sbjct: 407 GLGLPY 412


>gi|56708108|ref|YP_170004.1| GMP synthase [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670579|ref|YP_667136.1| GMP synthase [Francisella tularensis subsp. tularensis FSC198]
 gi|224457200|ref|ZP_03665673.1| GMP synthase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370592|ref|ZP_04986597.1| GMP synthase [Francisella tularensis subsp. tularensis FSC033]
 gi|254874907|ref|ZP_05247617.1| GMP synthase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|81597476|sp|Q5NG38|GUAA_FRATT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123359471|sp|Q14HJ0|GUAA_FRAT1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56604600|emb|CAG45652.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320912|emb|CAL09035.1| GMP synthase (glutamine-hydrolyzing) [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568835|gb|EDN34489.1| GMP synthase [Francisella tularensis subsp. tularensis FSC033]
 gi|254840906|gb|EET19342.1| GMP synthase [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159308|gb|ADA78699.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 516

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    D+V 
Sbjct: 212 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGDQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 266 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|268536380|ref|XP_002633325.1| Hypothetical protein CBG06062 [Caenorhabditis briggsae]
          Length = 377

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 39/134 (29%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL----RET-------AKDE 69
            +++ +SGG DS      L      + F  +        H +    +E        +KDE
Sbjct: 5   RVVIGMSGGVDSAVSAFLLK----QKGFDVVGL------HMINWDSQEEGSSTCPRSKDE 54

Query: 70  VRYVSDVCSRLRIAHSVVSW----------------KNSKPQTGLMAAAREARYALISEH 113
                +VC+RL I    V++                K  +     +      ++    + 
Sbjct: 55  AD-ARNVCNRLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCNYSIKFDAFHKV 113

Query: 114 AKT-INATLIMTAH 126
           A+   +A  I T H
Sbjct: 114 AQETFDADFIATGH 127


>gi|17228781|ref|NP_485329.1| hypothetical protein alr1286 [Nostoc sp. PCC 7120]
 gi|17130633|dbj|BAB73243.1| alr1286 [Nostoc sp. PCC 7120]
          Length = 275

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 59/199 (29%), Gaps = 40/199 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E ++     +      L+A SGG DS  +    +  L DR+   +  +A+    
Sbjct: 1   MLTEKLEQLKALFTEMGQA---LIAYSGGVDSTLVAKIAYDALGDRA---LAVTAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVV-SWKNSKPQ-----TGLMAAAREARYALISEH 113
               +   +E+       + + I+H +V +++   P             +   +  +   
Sbjct: 51  --SPSLLPEELEDAKIQAATIGISHKIVQTYEMDNPNYTSNPVNRCYFCKSELHDTLKPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC- 172
           A  +    ++     DD                   L      I          P     
Sbjct: 109 ALEMGYPYVVDGVNADD-------------------LHDYRPGIQAAKERGARSPLAEFG 149

Query: 173 -RREDIRSFLLQRNISWCE 190
             + ++R    Q  + W E
Sbjct: 150 ITKLEVRQLSQQLGLPWWE 168


>gi|88703376|ref|ZP_01101092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Congregibacter litoralis KT71]
 gi|88702090|gb|EAQ99193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Congregibacter litoralis KT71]
          Length = 372

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 54/195 (27%), Gaps = 44/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS    + L     D     +K               D   Y        
Sbjct: 10  KVIVGMSGGVDSSVAALILLEQGYDVEGLFMKNW----------DEDDGTEYCTAKVDYA 59

Query: 74  --SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAK 115
               V  +L I     +     W N          A           RE ++    ++A 
Sbjct: 60  DAQAVADKLGITLHAANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFRAFLDYAL 119

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRPFLR 171
            + A  I T H          MR  R    KG+  +      L+ +          P   
Sbjct: 120 ELGADRIATGHYAR-----RGMRHGRPALCKGLDNNKDQSYFLHAVGHAELSKTLFPLGE 174

Query: 172 CRREDIRSFLLQRNI 186
             + ++R+   +  +
Sbjct: 175 IEKPEVRALAERAGL 189


>gi|85702766|ref|ZP_01033870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. 217]
 gi|85671694|gb|EAQ26551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. 217]
          Length = 383

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 62/221 (28%), Gaps = 52/221 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L S   D     ++      DH             A  
Sbjct: 18  PAETRVVVAMSGGVDSSVVAAHLASEGYDVVGVTLQLY----DHG--AALAKKGACCAGV 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V   +   H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLN 162
            A+ + A  + T H             QR    +G  L    D+             +  
Sbjct: 132 TARDLEADCMATGH-----------YIQRKLGSQGPELHCASDSARDQSYFLFSTTPEQL 180

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P      +   R    Q  +   + P + D  F   
Sbjct: 181 DYLRFPLGHLPSKAATRELAAQYGLQVADKPDSQDICFVPN 221


>gi|262404008|ref|ZP_06080563.1| queuosine Biosynthesis QueC ATPase [Vibrio sp. RC586]
 gi|262349040|gb|EEY98178.1| queuosine Biosynthesis QueC ATPase [Vibrio sp. RC586]
          Length = 231

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEIAQKLAKQL 53

Query: 81 RI-AHSVVSWK 90
           + AH V+   
Sbjct: 54 GVTAHKVMDVN 64


>gi|325841863|ref|ZP_08167494.1| GMP synthase (glutamine-hydrolyzing) [Turicibacter sp. HGF1]
 gi|325489818|gb|EGC92171.1| GMP synthase (glutamine-hydrolyzing) [Turicibacter sp. HGF1]
          Length = 511

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V   ++L A+SGG DS  +   +H  + D      + + + VDH  LR+    E  
Sbjct: 210 IRAQVGSENVLCALSGGVDSSVVAALIHRAIGD------QLTCMFVDHGLLRKG---EAE 260

Query: 72  YVSDVCS-RLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +    +  +    +  +          S P+        E  Y    E AK  +   
Sbjct: 261 SVVETFDGKFNMNFIKIDAQERFLNKLKGVSDPEQKRKIIGNEFVYCFDEESAKLKDMKF 320

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 321 LAQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDMEFELIEPLNTLFKDEVRQLG 374

Query: 182 LQRNIS 187
           L+  + 
Sbjct: 375 LELGLP 380


>gi|293374623|ref|ZP_06620939.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Turicibacter sanguinis PC909]
 gi|292646773|gb|EFF64767.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Turicibacter sanguinis PC909]
          Length = 511

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 26/186 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V   ++L A+SGG DS  +   +H  + D      + + + VDH  LR+    E  
Sbjct: 210 IRAQVGSENVLCALSGGVDSSVVAALIHRAIGD------QLTCMFVDHGLLRKG---EAE 260

Query: 72  YVSDVCS-RLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +    +  +    +  +          S P+        E  Y    E AK  +   
Sbjct: 261 SVVETFDGKFNMNFIKIDAQERFLNKLKGVSDPEQKRKIIGNEFVYCFDEESAKLKDMKF 320

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D+   +  P     ++++R   
Sbjct: 321 LAQGTLYTDIIE------SGTDTAQTIKSHHNVGGLPEDMEFELIEPLNTLFKDEVRQLG 374

Query: 182 LQRNIS 187
           L+  + 
Sbjct: 375 LELGLP 380


>gi|221119829|ref|XP_002168506.1| PREDICTED: similar to guanine monphosphate synthetase, partial
           [Hydra magnipapillata]
          Length = 652

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 40/195 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSRLRIAH 84
           VSGG DS        ++L  ++ G  +  A+ +D+  LR   KDE   V  +     +  
Sbjct: 203 VSGGVDSTV-----CTILLQKAIGVERVIAVHIDNGFLR---KDESEKVKQLYEYHGLKL 254

Query: 85  SVVSWKNSKPQTGLM-----------------------AAAREARYALISEHAKTI---- 117
            V + K+    +                             R+       E  + I    
Sbjct: 255 HVYNEKHHFLHSSTRIPKKTETGTVNIQVGPLHSVTDPEEKRKIIGDTFIEVCERILNDL 314

Query: 118 ----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                 TL+       D +E+    +  +        +             I  P     
Sbjct: 315 KLDPETTLLAQGTLRPDLIESASHLASGNACTIKTHHNDTNMVRQLREKGRIVEPLKDFH 374

Query: 174 REDIRSFLLQRNISW 188
           ++++R+   Q  +  
Sbjct: 375 KDEVRALGRQLGVPH 389


>gi|218245564|ref|YP_002370935.1| GMP synthase [Cyanothece sp. PCC 8801]
 gi|257058608|ref|YP_003136496.1| GMP synthase [Cyanothece sp. PCC 8802]
 gi|226738435|sp|B7JXM2|GUAA_CYAP8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218166042|gb|ACK64779.1| GMP synthase, large subunit [Cyanothece sp. PCC 8801]
 gi|256588774|gb|ACU99660.1| GMP synthase, large subunit [Cyanothece sp. PCC 8802]
          Length = 542

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45
           ES+R  +R+ V    +L+A+SGG DS  L   LH  + D
Sbjct: 227 ESIRE-IRAKVGDKRVLLALSGGVDSSTLAFLLHRAIGD 264


>gi|124485953|ref|YP_001030569.1| GMP synthase [Methanocorpusculum labreanum Z]
 gi|124363494|gb|ABN07302.1| GMP synthase (glutamine-hydrolyzing) [Methanocorpusculum labreanum
           Z]
          Length = 508

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  +    +L A+SGG DS    + ++  +        + + I VDH  L
Sbjct: 197 SFVEDQVLQLREKIGDKKVLCALSGGVDSSVAAVLINKAVGK------QLTCIFVDHGLL 250

Query: 63  RETAKDEVR 71
           R+   +EV 
Sbjct: 251 RKNEGNEVE 259


>gi|154173866|ref|YP_001408766.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter curvus 525.92]
 gi|205811591|sp|A7GZX4|MNMA_CAMC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|112802625|gb|EAT99969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter curvus 525.92]
          Length = 339

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 53/179 (29%), Gaps = 27/179 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+VA+SGG DS      L     +     +K       H      ++ +R V  V   L
Sbjct: 2   KIMVAMSGGVDSTMTAKILKEAGHEIEGCYMKL------HQKPGYHEENIRKVKKVGEYL 55

Query: 81  RIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
            I   +               V            A   R  +   +   AK      + T
Sbjct: 56  GIKVHILDLQDKFNEFVYDPFVRLYKEGKTPNPCALCNRFIKLGALLNFAKQNGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H     ++     ++    ++   L+ +   +L D    +  P     + DI+    +
Sbjct: 116 GHYVQ-IIDGFVTMAKDPSKDQSYFLAQVPKEVLKD----VIFPLGDKFKADIKELARE 169


>gi|109898694|ref|YP_661949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas atlantica T6c]
 gi|122971887|sp|Q15T93|MNMA_PSEA6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|109700975|gb|ABG40895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoalteromonas atlantica T6c]
          Length = 396

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 49/200 (24%), Gaps = 51/200 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A D+++ 
Sbjct: 37  KKVIVGMSGGVDSSVSAYILLQQGYQVEGLFMK--------NWEEDDNDEYCAAADDLKD 88

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              V  +L I    +++                +  R               A +   A+
Sbjct: 89  AQAVADKLGIVLHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFKAFLEFAAE 148

Query: 116 TINATLIMTAH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            + A  I T H                    +  R   +       +       +   + 
Sbjct: 149 ELEADYIATGHYVRRREVDGH---------WQMLRGMDDNKDQSYFLYTLGEQHVGQTLF 199

Query: 167 RPFLRCRREDIRSFLLQRNI 186
            P     +  +R    ++ +
Sbjct: 200 -PIGDIEKPQVREIAQEQGL 218


>gi|288930774|ref|YP_003434834.1| GMP synthase, large subunit [Ferroglobus placidus DSM 10642]
 gi|288893022|gb|ADC64559.1| GMP synthase, large subunit [Ferroglobus placidus DSM 10642]
          Length = 304

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 25/182 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V     ++A+SGG DS    +  +  + DR         + VD  L RE    E  
Sbjct: 15  IKREVGDGKAIIALSGGVDSSVCAVLAYKAIGDRLIP------VFVDTGLMREG---EPE 65

Query: 72  YVSDVCSRLRIAHSVVS---WKNSKPQTGLMAAAR---EARYALISEHAKTINATLIMTA 125
            V +V   + +         +K  K  T      +   E    +  + A+   A  ++  
Sbjct: 66  RVKEVFGHMNLVFIDARDEFFKALKGVTDPEEKRKIVGELFVRIFEKVAEEKGAEYLIQG 125

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
             + D +E       +   +    + G      +     +  P     ++++R       
Sbjct: 126 TIYPDIIE------SQGGIKSHHNVGGFPTKYKFKK---VIEPLRELYKDEVREIARYLG 176

Query: 186 IS 187
           + 
Sbjct: 177 LP 178


>gi|229172079|ref|ZP_04299644.1| hypothetical protein bcere0006_11930 [Bacillus cereus MM3]
 gi|228611422|gb|EEK68679.1| hypothetical protein bcere0006_11930 [Bacillus cereus MM3]
          Length = 223

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIKQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +++   L I H+V+ 
Sbjct: 50 CAAEIAKELGIKHTVLD 66


>gi|333019852|gb|EGK39124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri K-227]
          Length = 368

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 35/133 (26%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR--------------YALISEH 113
                VC +L I    V++            +A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFKLFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLGADYIATGH 128


>gi|304398574|ref|ZP_07380446.1| GMP synthase, large subunit [Pantoea sp. aB]
 gi|304353785|gb|EFM18160.1| GMP synthase, large subunit [Pantoea sp. aB]
          Length = 526

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  V    +++ +SGG DS    + LH  + DR       + + VD+  L
Sbjct: 213 KIIEDAVERLREQVGNDKVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E + V D       +    V  +           +P+       R        E
Sbjct: 267 RLN---EAQQVMDMFGDHFGLNIIHVPAEMRFLDALAGIDEPEAKRKTIGRVFVEVFDEE 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 324 ALKLQDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 381 FKDEVRKIGLELGLPY 396


>gi|264678545|ref|YP_003278452.1| GMP synthase, large subunit [Comamonas testosteroni CNB-2]
 gi|262209058|gb|ACY33156.1| GMP synthase, large subunit [Comamonas testosteroni CNB-2]
          Length = 541

 Score = 45.7 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 216 IEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 266


>gi|320539284|ref|ZP_08038954.1| GMP synthetase (glutamine aminotransferase) [Serratia symbiotica
           str. Tucson]
 gi|320030676|gb|EFW12685.1| GMP synthetase (glutamine aminotransferase) [Serratia symbiotica
           str. Tucson]
          Length = 499

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V   H+++ +SGG DS    + L+  +  R       + + VD+  L
Sbjct: 186 TIIEDAVERIRQQVGEDHVILGLSGGVDSSVTAMLLYRAIGTR------LTCVFVDNGLL 239

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +           +    V+ +N          +P+       R        E
Sbjct: 240 RLNEADQVLEM---FGDGFGLNIVHVAAENRFLSELAGVDEPEAKRKIIGRVFVEVFDEE 296

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 297 ACKQSDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPQEMKLGLVEPLKEL 353

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   L+  + 
Sbjct: 354 FKDEVRKIGLELGLP 368


>gi|270293669|ref|ZP_06199871.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|270275136|gb|EFA20996.1| tRNA methyl transferase [Bacteroides sp. D20]
          Length = 366

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-------DEVRYV 73
           +I V +SGG DS  ++  L       S   IK          R+ A        +++   
Sbjct: 14  NIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIG--------RDDADYMDCSAEEDMEMA 65

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKTIN-- 118
           S +  R  ++  VV             A  + R  L                  + +   
Sbjct: 66  SAIARRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFEQRVGKD 125

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLRC 172
             +  T H       T  +R        G     + D   +   +       +  P  R 
Sbjct: 126 FDVTATGHYA-----TTVLR--DGKTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRL 178

Query: 173 RREDIRSFLLQRNIS 187
            + ++R   L+  + 
Sbjct: 179 MKNEVRDIALRAGLP 193


>gi|254375237|ref|ZP_04990717.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
 gi|151572955|gb|EDN38609.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548]
          Length = 359

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 59/203 (29%), Gaps = 41/203 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS    + L     D +   +K           E        A+ ++  
Sbjct: 4   KKVIVGISGGVDSSVSALLLKQQGYDVTGVFMK--------NWEEDDTDEFCSAEQDIAD 55

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLM-AAAR----------EARYALISEHAKT 116
              VC  + I    ++     W N      +   A R          E ++     +   
Sbjct: 56  AQAVCDSIGIRFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHL 115

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRC 172
           +    I T H       T  +        KG+  +      LY L     R    P    
Sbjct: 116 LGGNYIATGH----YARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNI 171

Query: 173 RREDIRSFLLQRNISWCE--DPS 193
            +  +R    + N+   +  D +
Sbjct: 172 EKSKVREIAKENNLVTFDKKDST 194


>gi|169611454|ref|XP_001799145.1| hypothetical protein SNOG_08840 [Phaeosphaeria nodorum SN15]
 gi|121920215|sp|Q0UHC4|GUAA_PHANO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|111062888|gb|EAT84008.1| hypothetical protein SNOG_08840 [Phaeosphaeria nodorum SN15]
          Length = 541

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 38/202 (18%)

Query: 13  VRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R LV     ++ AVSGG DS      +   + DR      F A+ VD+  LR     E 
Sbjct: 226 IRKLVGEKGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVMVDNGVLRLN---EA 276

Query: 71  RYVSDVCSR-LRIAHSVVSWKNS--KPQTGLMAAAREARY-------ALISEHAKTI--- 117
           + V +   + L I  +V+   +       G+     + R         +  E AK I   
Sbjct: 277 KQVKETLEKGLGINLTVIDASDMFLDRLKGITDNPEQKRKVIGNTFIEIFQEKAKEIAAA 336

Query: 118 --------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
                       ++    + D +E++  +      +    + G+      ++NL +  P 
Sbjct: 337 AKNSSNAGEIEWLLQGTLYPDVIESLSFKGPSQTIKTHHNVGGLPA----NMNLKLIEPL 392

Query: 170 LRCRREDIRSFLLQRNISWCED 191
               ++++R+  ++  I   ED
Sbjct: 393 RELFKDEVRALGVELGIP--ED 412


>gi|321309568|ref|YP_004191897.1| GMP synthase large subunit (glutamine-hydrolyzing) [Mycoplasma
           haemofelis str. Langford 1]
 gi|319801412|emb|CBY92058.1| GMP synthase large subunit (glutamine-hydrolyzing) [Mycoplasma
           haemofelis str. Langford 1]
          Length = 512

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           +R++V    +L+A+SGG DS  +   L              + + +D         E++ 
Sbjct: 209 IRNIVGNNKVLLALSGGLDSSVVAKLLKRACEH------NLTGVFIDTGFYP--DKEIKK 260

Query: 73  VSDVCS-RLRIAHSVVSWKNS-----KPQTGLMAAAR---EARYALISEHAKTINATLIM 123
           V D     LR +  ++  K       +  +      R   +          +        
Sbjct: 261 VMDYFKGELRSSFHIIDEKEKYMNALRGVSNPEEKRRIIGKLFLNSFENFLEKTGEGKFF 320

Query: 124 TAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            A      D +E+      +         +          N+ +  P     + ++R   
Sbjct: 321 LAQGTIQSDLIES-----GKKSDSSHTIKTHHNTIAELRENITVIEPLSDLFKNEVRELG 375

Query: 182 LQRNIS 187
            + ++ 
Sbjct: 376 RKLDLP 381


>gi|224536736|ref|ZP_03677275.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521652|gb|EEF90757.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 350

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 72/206 (34%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRETAKDEVRYVSDVCS 78
             +L+ +SGG+DS    + L     + +    +F     D     E + D+     ++ S
Sbjct: 5   KRVLLGMSGGTDSSVAAMLLQEAGYEVTGVTFRFY----DSEGF-EESLDDA---RNLAS 56

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------------ALISEHAK 115
           RL I H +   +    +       R  RY                        L+++ A 
Sbjct: 57  RLNIPHIIYDARELFRE-------RIIRYFVDEYLSAHTPVPCTLCNNELKWPLLAKIAD 109

Query: 116 TINATLIMTAH---------------TFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
            +    I T H                 D D+ +T +             L G+   IL 
Sbjct: 110 EMGIYWISTGHYVRKVFRDGYYFIAPAADRDKDQTFF-------------LWGLQQNILE 156

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRN 185
            +      P     + ++R++  +R 
Sbjct: 157 RM----LLPMGDWTKNEVRAYAAKRG 178


>gi|124027296|ref|YP_001012616.1| phosphoadenosine phosphosulphate reductase or sulphotransferase
           [Hyperthermus butylicus DSM 5456]
 gi|123977990|gb|ABM80271.1| phosphoadenosine phosphosulphate reductase or sulphotransferase
           [Hyperthermus butylicus DSM 5456]
          Length = 405

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVS 74
           +    IL+  SGG DS+  LI L  ++   SF K+    I +         +   VR++ 
Sbjct: 103 IRGRRILLGFSGGKDSVAALITLVKLMEYVSF-KLHVMYIHI-----PFLESPRNVRFIE 156

Query: 75  DVCSRLRIAHSVVSWKNSKPQT 96
            V  RL +   V+       ++
Sbjct: 157 QVSRRLGVEIEVLEAPRRDMKS 178


>gi|161524460|ref|YP_001579472.1| GMP synthase [Burkholderia multivorans ATCC 17616]
 gi|189350785|ref|YP_001946413.1| GMP synthase [Burkholderia multivorans ATCC 17616]
 gi|221198291|ref|ZP_03571337.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD2M]
 gi|221208230|ref|ZP_03581234.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD2]
 gi|221215487|ref|ZP_03588451.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD1]
 gi|226738401|sp|A9AIP4|GUAA_BURM1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|160341889|gb|ABX14975.1| GMP synthase, large subunit [Burkholderia multivorans ATCC 17616]
 gi|189334807|dbj|BAG43877.1| glutamine-hydrolysing GMP synthase [Burkholderia multivorans ATCC
           17616]
 gi|221164671|gb|EED97153.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD1]
 gi|221171878|gb|EEE04321.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD2]
 gi|221182223|gb|EEE14624.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Burkholderia multivorans CGD2M]
          Length = 539

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 25/199 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
           L R     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHIDASEQFLGHLAGVTDPEAKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K  NA  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAKKLSNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNISW 188
               ++++R   +   +  
Sbjct: 372 RDLFKDEVRELGVALGLPP 390


>gi|118474706|ref|YP_892420.1| GMP synthase [Campylobacter fetus subsp. fetus 82-40]
 gi|226738410|sp|A0RQD7|GUAA_CAMFF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118413932|gb|ABK82352.1| GMP synthase, glutamine-hydrolyzing [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 510

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 76/196 (38%), Gaps = 27/196 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S  +     +R  V    +L AVSGG DS  +   L   + D          + VD+  L
Sbjct: 199 SFAKKEVQAIREKVGNDKVLCAVSGGVDSSVVAALLAHAIPD------NLIVVFVDNGLL 252

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARY-------ALISE 112
           R     E + V ++  +L++  +++S   S+     +   R   + R         +  +
Sbjct: 253 RTN---EAKQVEEM-FKLKLGVNLISIDASELFLSRLKGVRDPEKKRKIIGETFIEVFDK 308

Query: 113 HAKTI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            AK   N   +     + D +E+  + S +   +    + G+ + + ++    +  P   
Sbjct: 309 EAKKHSNVKYLAQGTLYTDVIESSVVGSSK-TIKSHHNVGGLPEWMEFE----LIEPLRE 363

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R   L+  +S
Sbjct: 364 IFKDEVRRLGLELGLS 379


>gi|73748589|ref|YP_307828.1| tRNA-specific 2-thiouridylase MnmA [Dehalococcoides sp. CBDB1]
 gi|289432615|ref|YP_003462488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. GT]
 gi|123619640|sp|Q3ZXD7|MNMA_DEHSC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205814533|sp|A5FR85|MNMA_DEHSB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|73660305|emb|CAI82912.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. CBDB1]
 gi|288946335|gb|ADC74032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. GT]
          Length = 357

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 57/195 (29%), Gaps = 44/195 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----------VR 71
           ++VA+SGG DS    + L     + +   ++             + +E          + 
Sbjct: 8   VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQLK-----------SNNEPYGNGYNLKLIN 56

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-------------REARY---ALISEHAK 115
              +V + L I H VV   +   Q  +                 R   Y     +    +
Sbjct: 57  RAREVAAALNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQ 116

Query: 116 TINATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
              A  + T H      D+  T  +R      ++   L  +    L      +  P  + 
Sbjct: 117 DFKADYLATGHYARIVSDENGTHLLRGADGKKDQSYFLYTLPPESLSR----LMFPLGQK 172

Query: 173 RREDIRSFLLQRNIS 187
            ++DI        + 
Sbjct: 173 YKKDIVRLATNMKLP 187


>gi|147669349|ref|YP_001214167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. BAV1]
 gi|146270297|gb|ABQ17289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. BAV1]
          Length = 361

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 57/195 (29%), Gaps = 44/195 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE----------VR 71
           ++VA+SGG DS    + L     + +   ++             + +E          + 
Sbjct: 12  VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQLK-----------SNNEPYGNGYNLKLIN 60

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-------------REARY---ALISEHAK 115
              +V + L I H VV   +   Q  +                 R   Y     +    +
Sbjct: 61  RAREVAAALNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQ 120

Query: 116 TINATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
              A  + T H      D+  T  +R      ++   L  +    L      +  P  + 
Sbjct: 121 DFKADYLATGHYARIVSDENGTHLLRGADGKKDQSYFLYTLPPESLSR----LMFPLGQK 176

Query: 173 RREDIRSFLLQRNIS 187
            ++DI        + 
Sbjct: 177 YKKDIVRLATNMKLP 191


>gi|323127250|gb|ADX24547.1| GMP synthase [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 520

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGNRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|322411707|gb|EFY02615.1| GMP synthase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 520

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGNRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|313668065|ref|YP_004048349.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Neisseria lactamica ST-640]
 gi|313005527|emb|CBN86963.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Neisseria lactamica 020-06]
          Length = 383

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 21  ANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 70

Query: 75  -------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALIS 111
                   V   + I   +V++                +A R          E ++    
Sbjct: 71  QDSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFL 130

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +   +       +     + L   I  P   
Sbjct: 131 DYAVGQGADTIATGHYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERAIF-PLGG 189

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  + 
Sbjct: 190 LEKPEVRRLAAEFKLP 205


>gi|251782367|ref|YP_002996669.1| GMP synthase [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390996|dbj|BAH81455.1| bifunctional GMP synthase/glutamineamidotransferase protein
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 520

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH  LR+   D+V 
Sbjct: 219 IRETVGNRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGLLRKDEGDQVM 272

Query: 71  -----RYVSDVCSRLRI-------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                ++       L I           +      P+        E  Y    E +K   
Sbjct: 273 GMLGGKF------GLNIIRVDASKRFLDLLADVEDPEKKRKIIGNEFVYVFDDEASKLKG 326

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +     + D +E            + +        +  D+   +  P     ++++R
Sbjct: 327 VDFLAQGTLYTDIIE------SGTETAQTIKSHHNVGGLPEDMQFELIEPLNTLFKDEVR 380

Query: 179 SFLLQRN----ISWC 189
           +  +       I W 
Sbjct: 381 ALGIALGMPEEIVWR 395


>gi|257076313|ref|ZP_05570674.1| GMP synthase subunit B [Ferroplasma acidarmanus fer1]
          Length = 306

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 63/194 (32%), Gaps = 29/194 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE  R  + S ++   IL A SGG DS  LL  + +              I VD   L
Sbjct: 5   KFIEESREMILSKLHGKGIL-ACSGGQDST-LLSLIAA-------PIKNIEIIFVDTGLL 55

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           R     EV  V  +  +  + + ++  K            P+T      +     +  + 
Sbjct: 56  RLN---EVDRVKSLFEKFGVKYKLIDAKKIFLDNLKGVVDPETKRKIIGKTF-IDVFKKE 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+T  AT ++      D +E          +   +        +  DL   +  P     
Sbjct: 112 AETFGATYLLQGTIAPDWIE------SGGASRDTIKSHHNVGGLPADLGFELIEPLRDLY 165

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 166 KDEVREVSRYFGLP 179


>gi|86356407|ref|YP_468299.1| asparagine synthetase (glutamine-hydrolyzing) protein [Rhizobium
           etli CFN 42]
 gi|86280509|gb|ABC89572.1| asparagine synthetase (glutamine-hydrolyzing) protein [Rhizobium
           etli CFN 42]
          Length = 613

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA+SGG DS      L + L+ R F   +  A ++ +  R    DE  + + +   L
Sbjct: 257 PVAVALSGGIDSS-----LVAALTARHFPG-QLHAFTIGYKGRPD-TDERGFAATLAKEL 309

Query: 81  RIAHSVVSWKNS 92
            I  + V     
Sbjct: 310 GIGFTEVELDTG 321


>gi|83749991|ref|ZP_00946936.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia solanacearum UW551]
 gi|83723341|gb|EAP70574.1| GMP synthase (glutamine-hydrolyzing) [Ralstonia solanacearum UW551]
          Length = 593

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 259 MRDHIEEAVKLIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 312

Query: 62  L-RETAKDEVRYVSDVCS-RLR--IAHSVVSWK-------NSKPQTGLMAAAREARYALI 110
           L R     E + V D+   RL   + H+  S +        + P+       RE      
Sbjct: 313 LLRLN---EGQMVLDMFEGRLHAKVVHANASEQFLGHLAGVTDPEAKRKIIGREFVEVFQ 369

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +E  K  NA  +     + D +E+      +      +        +   L L +  P  
Sbjct: 370 AEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPLR 426

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R   +   +  
Sbjct: 427 DLFKDEVRELGVALGLPP 444


>gi|312622161|ref|YP_004023774.1| PP-loop domain-containing protein [Caldicellulosiruptor
          kronotskyensis 2002]
 gi|312202628|gb|ADQ45955.1| PP-loop domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 267

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 4  SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
            +E ++  ++S      +LVA SGG DS  LL     VL  ++ G    S       L 
Sbjct: 8  EKLERLKEIIKSY---ESVLVAFSGGVDSTFLLKVSFDVLGKKAIGVFSSSV------LS 58

Query: 64 ETAKDEVRYVSDVCSRLRIAHSVVSWKN 91
             + E    + +   +     V+    
Sbjct: 59 PQREKEDA--AKLAKDIGARLIVIERDV 84


>gi|331000512|ref|ZP_08324184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parasutterella excrementihominis YIT 11859]
 gi|329571476|gb|EGG53161.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Parasutterella excrementihominis YIT 11859]
          Length = 388

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 63/218 (28%), Gaps = 47/218 (21%)

Query: 1   MFLSPIESVRFFVRSL-VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           + ++ +   R + +   V    ++V +SGG DS      L     +     +K       
Sbjct: 11  LLIANLLKCRDYRKEFCVETKTVVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNW----- 65

Query: 60  HCLRETAKDEVRYVS---------DVCSRLRIAHSVVSWKNSKPQT------GLMAAAR- 103
                   D+  Y S          V   + I    V++                +A R 
Sbjct: 66  -----EDDDDSEYCSSRQDLIDATAVADVIGIDIEAVNFAKEYKDRVFAEFLSEYSAGRT 120

Query: 104 ---------EARYALISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMG 149
                    E ++    +HA  + A  I T H       D   E   ++   +  ++   
Sbjct: 121 PNPDVLCNSEIKFKAFLDHAIRLGADKIATGHYARVRERDGLFE--LLKGVDNTKDQSYF 178

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           L+ +    L         P     + ++R    +  + 
Sbjct: 179 LNRLNQYQLSKAMF----PVGDMCKTEVRRIAEEIGLP 212


>gi|257063226|ref|YP_003142898.1| conserved hypothetical protein TIGR00268 [Slackia
           heliotrinireducens DSM 20476]
 gi|256790879|gb|ACV21549.1| conserved hypothetical protein TIGR00268 [Slackia
           heliotrinireducens DSM 20476]
          Length = 272

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 79/269 (29%), Gaps = 44/269 (16%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L     + VA SGG DS  L    H VL D +       A++   C+      E+    
Sbjct: 16  ELRRMGSVAVAFSGGVDSTLLTKVAHDVLGDAA------VAVTAHPCVMP--DRELDEAK 67

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM---AAAREARYALISEHAKTINAT---LIMTAHTF 128
             C+   I   VV       +             + AL ++      A     ++     
Sbjct: 68  AFCAGEGIRQVVVETDVFAIEGFAQNPPDRCYLCKKALFNQIMDAAAAAGAVHVVEGSNM 127

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNI 186
           DD              +   G+  + +         +  P       + +IR    +  +
Sbjct: 128 DDL------------GDYRPGMRALEEM-------GVESPLRTAELTKAEIRELSRELGL 168

Query: 187 SWCEDPSNTDDR----FERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
                PS         +     R  +  +     ++  + F  +RV+++  +A      +
Sbjct: 169 PTWSKPSFACLASRFVYGEEITREKLDRVGAAEQFVMDQGFAQVRVRMHGDMA-----RI 223

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVS 271
            V  + +  I+ + L          L  S
Sbjct: 224 EVPEQDVARIAAEPLRARIAERLRGLGFS 252


>gi|332289173|ref|YP_004420025.1| tRNA-specific 2-thiouridylase MnmA [Gallibacterium anatis UMN179]
 gi|330432069|gb|AEC17128.1| tRNA-specific 2-thiouridylase MnmA [Gallibacterium anatis UMN179]
          Length = 384

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 59/217 (27%), Gaps = 53/217 (24%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +SP +    F  +      ++V +SGG DS      L           +K        
Sbjct: 12  MTISPQQ----FAENQQK--KVIVGMSGGVDSSVSAYILQQQGYQVEGLFMKNW------ 59

Query: 61  CLRETAKDEVRYV---------SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR-- 103
                  D+  Y            VC +L I    +++                 A R  
Sbjct: 60  ----EEDDDTDYCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTP 115

Query: 104 --------EARY-ALISEHAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMG 149
                   E ++ A +   A+ + A  I T H       D+  +   +R      ++   
Sbjct: 116 NPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRRGDDENAQ--LLRGLDGNKDQSYF 173

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
           L  +    +         P     +  +R       +
Sbjct: 174 LYTLSHKQV----GQSLFPVGELEKPVVRQIAEDLGL 206


>gi|195352054|ref|XP_002042530.1| GM23268 [Drosophila sechellia]
 gi|194124399|gb|EDW46442.1| GM23268 [Drosophila sechellia]
          Length = 677

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD+   R  
Sbjct: 216 EECIRYIREKVGNNKVLLLVSGGVDSSVCAALL-----RRALYPDQIIAVHVDNGFMR-- 268

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
            K E   V      + I   V  
Sbjct: 269 -KKESEKVERSLRDIGIDLIVRK 290


>gi|237807722|ref|YP_002892162.1| exsB protein [Tolumonas auensis DSM 9187]
 gi|237499983|gb|ACQ92576.1| exsB protein [Tolumonas auensis DSM 9187]
          Length = 232

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 12/85 (14%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   LL A+            +  AI+ D+  R     E+     + + L
Sbjct: 9   VVV-FSGGQDSTTCLLYAVQQYD--------EVHAITFDYGQRHV--QEIEVARQIAADL 57

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA 105
            +A   V       +  + A  R+A
Sbjct: 58  GLAAHKVLDVGLLNELAVSALTRDA 82


>gi|317498352|ref|ZP_07956648.1| exsB protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894357|gb|EFV16543.1| exsB protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 221

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +  P   +V  SGG DS   L        +         A+S ++  R +   E+     
Sbjct: 1  MAKPNKAVVVFSGGQDSTTCLFWAKKKYDE-------VIALSFNYGQRHS--KELECAKK 51

Query: 76 VCSRLRIAHSVVS 88
          +C    + H ++ 
Sbjct: 52 ICKEHGVEHHILD 64


>gi|300704204|ref|YP_003745807.1| gmp synthetase [Ralstonia solanacearum CFBP2957]
 gi|299071868|emb|CBJ43197.1| GMP synthetase [Ralstonia solanacearum CFBP2957]
          Length = 539

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MRDHIEEAVKSIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L-RETAKDEVRYVSDVCS-RLR--IAHSVVSWK-------NSKPQTGLMAAAREARYALI 110
           L R     E + V D+   RL   + H+  S +        + P+       RE      
Sbjct: 259 LLRLN---EGQMVLDMFEGRLHAKVVHANASEQFLGHLAGVTDPEAKRKIIGREFVEVFQ 315

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +E  K  NA  +     + D +E+      +      +        +   L L +  P  
Sbjct: 316 AEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPLR 372

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R   +   +  
Sbjct: 373 DLFKDEVRELGVALGLPP 390


>gi|299530953|ref|ZP_07044366.1| GMP synthase [Comamonas testosteroni S44]
 gi|298720910|gb|EFI61854.1| GMP synthase [Comamonas testosteroni S44]
          Length = 538

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 213 IEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 263


>gi|291561059|emb|CBL39859.1| preQ(0) biosynthesis protein QueC [butyrate-producing bacterium
          SSC/2]
          Length = 221

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +  P   +V  SGG DS   L        +         A+S ++  R +   E+     
Sbjct: 1  MAKPNKAVVVFSGGQDSTTCLFWAKKKYDE-------VIALSFNYGQRHS--KELECAKK 51

Query: 76 VCSRLRIAHSVVS 88
          +C    + H ++ 
Sbjct: 52 ICKEHGVEHHILD 64


>gi|182412017|ref|YP_001817083.1| GMP synthase, large subunit [Opitutus terrae PB90-1]
 gi|254800108|sp|B1ZNB4|GUAA_OPITP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|177839231|gb|ACB73483.1| GMP synthase, large subunit [Opitutus terrae PB90-1]
          Length = 512

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+    + +++ +SGG DS      LH  +        + + + VD+  LR+  +D   
Sbjct: 208 IRAKAGKSRVILGLSGGVDSSVAAALLHKAIGR------QLTCVFVDNGLLRKGERD--- 258

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
           YV  +  +   I   +V             ++P+       R              +A  
Sbjct: 259 YVEALYKKHFHIDLRIVDASKLFLKRLKGVTEPEQKRKIIGRTFVEVFEKALKTVGHADF 318

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S  +     +        +   + L +  P     ++++R   
Sbjct: 319 LGQGTLYPDVIESV---SIGNNPASVIKTHHNVGGLPERMKLKLIEPLRELFKDEVRKVG 375

Query: 182 LQRNIS 187
               + 
Sbjct: 376 AALGLP 381


>gi|183220730|ref|YP_001838726.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910831|ref|YP_001962386.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|205816873|sp|B0SPC6|MNMA_LEPBP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205816879|sp|B0SG84|MNMA_LEPBA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|167775507|gb|ABZ93808.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779152|gb|ABZ97450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 380

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 57/217 (26%), Gaps = 65/217 (29%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---------- 65
           +     I+VA+SGG DS      L     D          I V+  LR            
Sbjct: 1   MKEKEKIIVAMSGGVDSAVAAGLLMEAGYD---------VIGVN--LRTWEYEAPACDTT 49

Query: 66  -----AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA------ARE---------- 104
                + +++R   DV   L I   V+  +    +  +          R           
Sbjct: 50  KKSCCSPEDIRDARDVGLSLNIPFYVIKMEKVFGERVIDRFISDYKDGRTPNPCVECNTF 109

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            ++  + E AK +    I T H              R     G         +  +   +
Sbjct: 110 VKFGALFEQAKKLGIDKIATGHYA------------RVIEVDGRYAIRNAVDMKKNQTYY 157

Query: 165 ISR-----------PFLRCRREDIRSFLLQRNISWCE 190
           +             P     + ++R    +  +   E
Sbjct: 158 LYGLSQDNIKNTVFPLGEMDKSEVREIAKRMGLPVAE 194


>gi|167768060|ref|ZP_02440113.1| hypothetical protein CLOSS21_02604 [Clostridium sp. SS2/1]
 gi|167710389|gb|EDS20968.1| hypothetical protein CLOSS21_02604 [Clostridium sp. SS2/1]
          Length = 221

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +  P   +V  SGG DS   L        +         A+S ++  R +   E+     
Sbjct: 1  MAKPNKAVVVFSGGQDSTTCLFWAKKKYDE-------VIALSFNYGQRHS--KELECAKK 51

Query: 76 VCSRLRIAHSVVS 88
          +C    + H ++ 
Sbjct: 52 ICKEHGVEHHILD 64


>gi|134295998|ref|YP_001119733.1| GMP synthase [Burkholderia vietnamiensis G4]
 gi|226738409|sp|A4JF45|GUAA_BURVG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|134139155|gb|ABO54898.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia vietnamiensis
           G4]
          Length = 539

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 67/199 (33%), Gaps = 25/199 (12%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MKNHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYAL 109
            LR     E + V D+    R+   VV    S+   G +A             RE     
Sbjct: 259 LLRLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLAGVTDPEQKRKIIGREFVEVF 314

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            +E  K   A  +     + D +E+      +      +        +   L L +  P 
Sbjct: 315 QAEAQKLSKAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEPL 371

Query: 170 LRCRREDIRSFLLQRNISW 188
               ++++R   +   +  
Sbjct: 372 RDLFKDEVRELGVALGLPP 390


>gi|325142740|gb|EGC65116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis 961-5945]
 gi|325198666|gb|ADY94122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis G2136]
 gi|325201768|gb|ADY97222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M01-240149]
 gi|325208488|gb|ADZ03940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis NZ-05/33]
          Length = 367

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 5   ANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 54

Query: 75  -------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALIS 111
                   V   + I   +V++                +A R          E ++    
Sbjct: 55  QDSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +           +     + L   I  P   
Sbjct: 115 DYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIF-PLGG 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  + 
Sbjct: 174 LEKPEVRRLAAEFKLP 189


>gi|302330131|gb|ADL20325.1| bifunctional GMP synthase [Corynebacterium pseudotuberculosis 1002]
          Length = 526

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 66/199 (33%), Gaps = 29/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             I++VR     +      +  +SGG DS     A+   L  R+ G  + + + VDH L 
Sbjct: 210 ELIQAVR---EQVGPEGRAICGLSGGVDS-----AVAGALVQRAIGD-RLTCVFVDHGLL 260

Query: 63  RETAKDEVR--YVS----------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL- 109
           R   +++V   +V+          +  + L     V   +  +   G        R    
Sbjct: 261 RAGEREQVEKDFVASTGAKLVTVDERAAFLNKLAGVTDPEAKRKAIGAEFIRSFERAVAG 320

Query: 110 -ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +    +  +   ++    + D +E+             +        +  D+   +  P
Sbjct: 321 VLESAPEGSSVDFLVQGTLYPDVVES-----GGGAGTANIKSHHNVGGLPDDVEFKLVEP 375

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R+   +  + 
Sbjct: 376 LRLLFKDEVRAVGRELGLP 394


>gi|254805310|ref|YP_003083531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha14]
 gi|254668852|emb|CBA06922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis alpha14]
 gi|319410773|emb|CBY91158.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis WUE 2594]
 gi|325140698|gb|EGC63213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis CU385]
          Length = 367

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 52/196 (26%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 5   ANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 54

Query: 75  -------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALIS 111
                   V   + I   +V++                +A R          E ++    
Sbjct: 55  QDSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +           +     + L   I  P   
Sbjct: 115 DYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIF-PLGG 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    +  + 
Sbjct: 174 LEKPEVRRLAAEFKLP 189


>gi|160881034|ref|YP_001560002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium phytofermentans ISDg]
 gi|205813731|sp|A9KPI9|MNMA_CLOPH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160429700|gb|ABX43263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium phytofermentans ISDg]
          Length = 357

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 51/206 (24%), Gaps = 58/206 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------- 72
             ++V +SGG DS      L     D     ++          ++     V         
Sbjct: 2   KKVVVGMSGGVDSSVAAYLLKEAGYDVIGVTMQI--------WQDEDNQTVEENGGCCGL 53

Query: 73  -----VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALIS 111
                   V + L I + V+++K                +        A  R  ++  + 
Sbjct: 54  SAVDDARRVANSLDIPYYVMNFKSEFKANVMDYFVKEYQAGRTPNPCIACNRYVKWESLL 113

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI------ 165
             +  I A  I T H           R        G        T   D    +      
Sbjct: 114 TRSLQIGADYIATGHYA---------RIV--TLPNGRFALKKSATAAKDQTYALYNLTQD 162

Query: 166 -----SRPFLRCRREDIRSFLLQRNI 186
                  P     +E++R    +  +
Sbjct: 163 QLSKTLMPVGEYTKEEVREIAAKIGL 188


>gi|295097951|emb|CBK87041.1| GMP synthase (glutamine-hydrolyzing) [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 525

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 221 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 271

Query: 72  YVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALI-----SEHAKTINATL 121
            V D       +    V     + ++        A R+    +       E  K  +   
Sbjct: 272 QVMDMFGDHFGLNIVHVEGEQRFLDALKGENDPEAKRKIIGRVFVEVFDEEALKLEDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|156551968|ref|XP_001600621.1| PREDICTED: similar to ENSANGP00000015341 [Nasonia vitripennis]
          Length = 395

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 59/202 (29%), Gaps = 45/202 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI------SVDHCLRETAKDEVRYV 73
             ++V +SGG DS    + L S          K + I       V+      A+ +    
Sbjct: 3   KKVIVGISGGVDSAVAALLLKS-------KGFKVTGIFMRNWDIVNELGECQAEKDYEDA 55

Query: 74  SDVCSRLRIAHSVVSW-----------------KNSKPQTGLMAAAREARYALISEHAKT 116
             +C+RL+I    V++                     P   +    +             
Sbjct: 56  KWICNRLKIPLHDVNFVKDYWNEVFSYLLENYEVGKTPNPDIQCNKKIKFNKFFHYARTE 115

Query: 117 INATLIMTAHTFDDQLETV-----------YMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           + A  I T H   +   +             +R++    ++   LS +    L       
Sbjct: 116 LGADAIATGHYARNSFGSFLEDYKPDTNASLLRAKDSLKDQTFFLSQIPQLSLRRTMF-- 173

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     ++D++    + N+ 
Sbjct: 174 --PLGEYLKKDVKKMAKEANLE 193


>gi|21672533|ref|NP_660600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Sg (Schizaphis graminum)]
 gi|25009493|sp|Q8K9Q8|MNMA_BUCAP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21623156|gb|AAM67811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 367

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 59/209 (28%), Gaps = 49/209 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               +++A+SGG DS      L +         +K               DE  Y     
Sbjct: 4   KNKKVIIAMSGGVDSSVSAWFLKNENYQVEGLFMKNW----------EEDDEKEYCNAAK 53

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------------LIS 111
                 +VC +L I    V++     +        E +                     +
Sbjct: 54  DLSDAEEVCKKLNIHLHKVNFSKEYWEKVFENFLNEHKKGKTPNPDILCNKEIKFKIFFN 113

Query: 112 EHAKTINATLIMTAHTFDDQLET-----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
              + + +  I T H    Q++        +++     ++   L  +    L +    I 
Sbjct: 114 YAIQELQSDYIATGHYA--QIKKKNGKYFLLKAVDLNKDQSYFLYTLKGIQLKN----IL 167

Query: 167 RPFLRCRREDIRSFLLQRNISWCE--DPS 193
            P    ++  +R    +  +   E  D +
Sbjct: 168 FPIGGLKKSQVRIIAKKIGLKVAEKKDST 196


>gi|94984899|ref|YP_604263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus geothermalis DSM 11300]
 gi|205816613|sp|Q1J090|MNMA_DEIGD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|94555180|gb|ABF45094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Deinococcus geothermalis DSM 11300]
          Length = 381

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 36/193 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
            +L A+SGG DS      L             F        + D C    A  E R V  
Sbjct: 10  RVLCAMSGGVDSSVTAALLKDAGYQVIGAMMRFWPDDKRVDTFDTCCSPDAAYEARRV-- 67

Query: 76  VCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAKTINA 119
              ++ +   ++ ++         P     A  R          + ++  + + AK +  
Sbjct: 68  -AEQVGVPFYLLDYREQFQHHIVGPFLSEYAQGRTPNPCVNCNTKVKFDELVKKAKMLGC 126

Query: 120 TLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
             + T H        D  +E       R    +      +  T   +   +I  P     
Sbjct: 127 RYVATGHYVKRVEREDGSVE-----FHRGDDPRKDQTYFLWGT-PREALPFILFPVGELE 180

Query: 174 REDIRSFLLQRNI 186
           +  +R    ++ +
Sbjct: 181 KPRVREIAAEKGL 193


>gi|289641673|ref|ZP_06473833.1| ExsB family protein [Frankia symbiont of Datisca glomerata]
 gi|289508542|gb|EFD29481.1| ExsB family protein [Frankia symbiont of Datisca glomerata]
          Length = 472

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 23/122 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSD 75
             +LVA SGG+DS  LL A     + R+ G  +  A +       ++      E+   +D
Sbjct: 206 GSVLVAFSGGADSAFLLTA-----AVRTLGADRVVAAT------ASSASLPAAELAAATD 254

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKTINATLIMTAHTF 128
             +RL + H      N   + G  A   +  Y         +   A ++    ++T    
Sbjct: 255 FAARLGVRHLT-PATNEMGREGYRANGPDRCYFCKAELTETLRPLADSLGLVHVVTGTNA 313

Query: 129 DD 130
           DD
Sbjct: 314 DD 315


>gi|254478804|ref|ZP_05092171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydibrachium pacificum DSM 12653]
 gi|214035259|gb|EEB75966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Carboxydibrachium pacificum DSM 12653]
          Length = 376

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 76/246 (30%), Gaps = 64/246 (26%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV- 73
           S+     ++V +SGG DS      L     +          I V   + +   +E   V 
Sbjct: 12  SMQKNNRVVVGMSGGVDSSVAAYLLKEQGYE---------VIGVTMQIWQDKDEEAVRVE 62

Query: 74  ------------SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREAR 106
                         V +++ I + V+++K+   +                    A  +  
Sbjct: 63  GGCCSLAAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNK-- 120

Query: 107 YALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMG-LSGMCDTIL 158
           Y    E  K    I+A  + T H      D++     ++   D ++     L  +  T L
Sbjct: 121 YIKFEELLKRAWMIDAYYVATGHYAIKEYDEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPSNTDDRFERVRVRRF 207
                 I  P  + +++++R       +            +  D  N   +F R   +  
Sbjct: 181 E----HILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTD--NDYGKFIRENAKEE 234

Query: 208 VRDIDL 213
           ++  + 
Sbjct: 235 IKPGEF 240


>gi|116492215|ref|YP_803950.1| GMP synthase [Pediococcus pentosaceus ATCC 25745]
 gi|122266321|sp|Q03H14|GUAA_PEDPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|116102365|gb|ABJ67508.1| GMP synthase (glutamine-hydrolyzing) [Pediococcus pentosaceus ATCC
           25745]
          Length = 517

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L+  + D      +   I VDH L
Sbjct: 216 IRETVGDRKVLLGLSGGVDSSVVGVLLNKAIGD------QLVCIFVDHGL 259


>gi|270012865|gb|EFA09313.1| hypothetical protein TcasGA2_TC030725 [Tribolium castaneum]
          Length = 687

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +V++ V    +L+ VSGG DS      LH  L        +  AI +D
Sbjct: 223 YVKNAVGNNKVLLLVSGGVDSTVAAALLHKALR-----PDQIIAIHID 265


>gi|189240082|ref|XP_001812886.1| PREDICTED: similar to gmp synthase [Tribolium castaneum]
          Length = 748

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +V++ V    +L+ VSGG DS      LH  L        +  AI +D
Sbjct: 284 YVKNAVGNNKVLLLVSGGVDSTVAAALLHKALR-----PDQIIAIHID 326


>gi|221066857|ref|ZP_03542962.1| GMP synthase, large subunit [Comamonas testosteroni KF-1]
 gi|220711880|gb|EED67248.1| GMP synthase, large subunit [Comamonas testosteroni KF-1]
          Length = 538

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 213 IEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 263


>gi|99035878|ref|ZP_01314930.1| hypothetical protein Wendoof_01000225 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 370

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 28/183 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDVCSR 79
           +VA+SGG DS      LH++        ++      +   R+    A  ++     V   
Sbjct: 22  VVAMSGGVDSSVAAALLHNLGYKVVGMTLQLYGTDGNANARKGACCAGQDIYDAKRVAES 81

Query: 80  LRIAHSVVSWKNSKPQTGLMAAARE-AR---------------YALISEHAKTINATLIM 123
           +   H +++++    +  +   A    R               +  + +  K + A +++
Sbjct: 82  VGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVTKNLGADVLV 141

Query: 124 TAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-PFLRCRREDIRS 179
           T H     +   E    RS     ++   L            L + R P     + DIR 
Sbjct: 142 TGHYVRRLEKNGEVKLCRSIDKSKDQSYFLFATTQE-----QLKLLRFPLGGFYKSDIRK 196

Query: 180 FLL 182
              
Sbjct: 197 LAK 199


>gi|332799658|ref|YP_004461157.1| GMP synthase [Tepidanaerobacter sp. Re1]
 gi|332697393|gb|AEE91850.1| GMP synthase (glutamine-hydrolyzing) [Tepidanaerobacter sp. Re1]
          Length = 511

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 27/192 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++  ++  V     + A+SGG DS    + +H  + D        + I VDH  LR+ 
Sbjct: 205 EQIKL-IKDKVADKKAICALSGGVDSSVAALLVHKAIGD------NLTCIFVDHGLLRKN 257

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
              E   V      +  +    V             + P+        E       E AK
Sbjct: 258 ---EAENVIKTFKDKFHMNLIAVDASKRFLSKLKGVTDPEKKRKIIGEEFIRVFEEEAAK 314

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 ++    + D +E+V         +    + G+ + + ++    +  P     ++
Sbjct: 315 LGKVNFLVQGTVYPDVIESV--NPIGGAVKSHHNVGGLPEDLEFE----LIEPLRELFKD 368

Query: 176 DIRSFLLQRNIS 187
           ++R   L+  + 
Sbjct: 369 EVRKIGLELGLP 380


>gi|315179841|gb|ADT86755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio furnissii NCTC 11218]
          Length = 372

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 32/137 (23%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------A 66
           R+      ++V +SGG DS      L           +K           E        A
Sbjct: 5   RNANSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCTA 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YAL 109
            +++     VC +L I    +++             A  +  R               A 
Sbjct: 57  AEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAF 116

Query: 110 ISEHAKTINATLIMTAH 126
           +    + ++A  I   H
Sbjct: 117 LEFADEVLDADYIAMGH 133


>gi|260768141|ref|ZP_05877075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio furnissii CIP 102972]
 gi|260616171|gb|EEX41356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio furnissii CIP 102972]
          Length = 372

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 32/137 (23%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------A 66
           R+      ++V +SGG DS      L           +K           E        A
Sbjct: 5   RNANSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCTA 56

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YAL 109
            +++     VC +L I    +++             A  +  R               A 
Sbjct: 57  AEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAF 116

Query: 110 ISEHAKTINATLIMTAH 126
           +    + ++A  I   H
Sbjct: 117 LEFADEVLDADYIAMGH 133


>gi|226951365|ref|ZP_03821829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|226837887|gb|EEH70270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter sp. ATCC 27244]
          Length = 377

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 58/199 (29%), Gaps = 44/199 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTALEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V  ++ I     ++                AA R          E ++    +HA T+
Sbjct: 56  QAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTL 115

Query: 118 NATLIMTAHTF-------DDQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            A  I T H         + + ET    +R   +  ++   L  +    +         P
Sbjct: 116 GADFIATGHYARRGASMQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREISKT----LFP 171

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +  +R    + +++
Sbjct: 172 VGEIEKPQVRKIAEELDLA 190


>gi|309378502|emb|CBX22855.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 383

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 52/194 (26%), Gaps = 36/194 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS---- 74
           P++I+V +SGG DS      L           ++               D   Y S    
Sbjct: 23  PSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIKQD 72

Query: 75  -----DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
                 V   + I   +V++                +A R          E ++    ++
Sbjct: 73  SFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDY 132

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A    A  I T H    ++        +           +     + L   I  P     
Sbjct: 133 AVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIF-PLGGLE 191

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  + 
Sbjct: 192 KPEVRRLAAEFKLP 205


>gi|307595994|ref|YP_003902311.1| Queuosine synthesis [Vulcanisaeta distributa DSM 14429]
 gi|307551195|gb|ADN51260.1| Queuosine synthesis [Vulcanisaeta distributa DSM 14429]
          Length = 235

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 30/185 (16%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS--- 78
           IL+ +SGG DS   L  L S             A+S+++  R   + E     ++     
Sbjct: 6   ILL-LSGGIDSAVALYLLKS-------RGYDVIALSINYPGRGERERESA--RELARLTN 55

Query: 79  ----RLRIAH---SVVSWKNSKPQTG-LMAA------AREAR-YALISEHAKTINATLIM 123
                + +         W N   +   L  A      AR A  YA+ + +A+      I+
Sbjct: 56  TKLIEVDLPFMREVDELWNNDDERPSHLRNAHPSTIPARNAIIYAVAAYYAEVFGIDTIV 115

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             H  DD     +  + R++         +   I     L +  P     + D+    L+
Sbjct: 116 AGHNADDT--KYFPDTSREFRRFISRALTIGTYIGRARGLRVIAPLSGLSKTDVVRLGLK 173

Query: 184 RNISW 188
             + +
Sbjct: 174 LGVPF 178


>gi|294637669|ref|ZP_06715948.1| GMP synthase [Edwardsiella tarda ATCC 23685]
 gi|291089224|gb|EFE21785.1| GMP synthase [Edwardsiella tarda ATCC 23685]
          Length = 525

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +    +++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAVARMREQIGDDEVILGLSGGVDSSVTALLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +    +  +    V+ ++         + P+       R        E
Sbjct: 266 RLN---EAEQVMAMFGDQFGLNIIHVNAEDRFLAALAGIADPEAKRKTIGRVFIEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 AAKLPQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPEEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  +  
Sbjct: 380 FKDEVRKIGLELGLPH 395


>gi|297526033|ref|YP_003668057.1| phosphoadenosine phosphosulfate reductase [Staphylothermus
           hellenicus DSM 12710]
 gi|297254949|gb|ADI31158.1| phosphoadenosine phosphosulfate reductase [Staphylothermus
           hellenicus DSM 12710]
          Length = 418

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           R F+ SL  P  +LV+ SGG DS+ +L       +   +G+     I VD
Sbjct: 205 RRFLNSLGKPDIVLVSFSGGKDSLVVLHM-----AKMHYGEDMVRGIYVD 249


>gi|206560424|ref|YP_002231188.1| GMP synthase [Burkholderia cenocepacia J2315]
 gi|226738400|sp|B4EC68|GUAA_BURCJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|198036465|emb|CAR52361.1| GMP synthase [glutamine-hydrolyzing] [Burkholderia cenocepacia
           J2315]
          Length = 539

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MKNHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L 62
           L
Sbjct: 259 L 259


>gi|160888906|ref|ZP_02069909.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492]
 gi|317479366|ref|ZP_07938500.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
 gi|156861805|gb|EDO55236.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492]
 gi|316904440|gb|EFV26260.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
          Length = 354

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-------DEVRYV 73
           +I V +SGG DS  ++  L       S   IK          R+ A        +++   
Sbjct: 2   NIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIG--------RDDADYMDCSAEEDMEMA 53

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKTIN-- 118
           S +  R  ++  VV             A  + R  L                  + +   
Sbjct: 54  SAIARRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFEQRVGKD 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLRC 172
             +  T H       T  +R        G     + D   +   +       +  P  R 
Sbjct: 114 FDVTATGHYA-----TTVLR--DGKTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRL 166

Query: 173 RREDIRSFLLQRNIS 187
            + ++R   L+  + 
Sbjct: 167 MKNEVRDIALRAGLP 181


>gi|254247913|ref|ZP_04941234.1| GMP synthase [Burkholderia cenocepacia PC184]
 gi|124872689|gb|EAY64405.1| GMP synthase [Burkholderia cenocepacia PC184]
          Length = 539

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MKNHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L 62
           L
Sbjct: 259 L 259


>gi|107028831|ref|YP_625926.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia cenocepacia AU 1054]
 gi|116690010|ref|YP_835633.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia cenocepacia HI2424]
 gi|170733345|ref|YP_001765292.1| GMP synthase [Burkholderia cenocepacia MC0-3]
 gi|123070961|sp|Q1BHF2|GUAA_BURCA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738398|sp|B1JUC0|GUAA_BURCC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738399|sp|A0K8B3|GUAA_BURCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|105897995|gb|ABF80953.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia cenocepacia AU
           1054]
 gi|116648099|gb|ABK08740.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia cenocepacia
           HI2424]
 gi|169816587|gb|ACA91170.1| GMP synthase, large subunit [Burkholderia cenocepacia MC0-3]
          Length = 539

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MKNHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L 62
           L
Sbjct: 259 L 259


>gi|316963376|gb|EFV49033.1| ATP-binding domain-containing protein 3 [Trichinella spiralis]
          Length = 131

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETA 66
           ++++ VSGG DS  +L  L+ +L+ R    +  S ++V+  +   R+ +
Sbjct: 74  NVVIGVSGGKDSAVVLHVLY-LLNKRFNYGLHLSMLAVNEGIAGYRDES 121


>gi|300857847|ref|YP_003782830.1| GMP synthase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685301|gb|ADK28223.1| GMP synthase [Corynebacterium pseudotuberculosis FRC41]
 gi|302205577|gb|ADL09919.1| bifunctional GMP synthase [Corynebacterium pseudotuberculosis C231]
 gi|308275812|gb|ADO25711.1| bifunctional GMP synthase [Corynebacterium pseudotuberculosis I19]
          Length = 525

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 66/199 (33%), Gaps = 29/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             I++VR     +      +  +SGG DS     A+   L  R+ G  + + + VDH L 
Sbjct: 209 ELIQAVR---EQVGPEGRAICGLSGGVDS-----AVAGALVQRAIGD-RLTCVFVDHGLL 259

Query: 63  RETAKDEVR--YVS----------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL- 109
           R   +++V   +V+          +  + L     V   +  +   G        R    
Sbjct: 260 RAGEREQVEKDFVASTGAKLVTVDERAAFLNKLAGVTDPEAKRKAIGAEFIRSFERAVAG 319

Query: 110 -ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +    +  +   ++    + D +E+             +        +  D+   +  P
Sbjct: 320 VLESAPEGSSVDFLVQGTLYPDVVES-----GGGAGTANIKSHHNVGGLPDDVEFKLVEP 374

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R+   +  + 
Sbjct: 375 LRLLFKDEVRAVGRELGLP 393


>gi|260778538|ref|ZP_05887430.1| queuosine Biosynthesis QueC ATPase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604702|gb|EEX30997.1| queuosine Biosynthesis QueC ATPase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 231

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 61/189 (32%), Gaps = 45/189 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL +          +  AI+ D+  R   K E+    D+   L
Sbjct: 5   VVV-FSGGQDSTTCLVQALKNYD--------EVHAITFDYGQRH--KLEIEVAQDLAKEL 53

Query: 81  RIAHSVVSWKNSKPQTGLMAAARE-------------------AR----YALISEHAKTI 117
            +    V       +  + +  R+                    R      L   +A  I
Sbjct: 54  GVKAHKVMDVGLLNELAISSLTRDDIPVSHELQENGLPNSFVPGRNILFLTLAGIYAYQI 113

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  ++T        ET +      R+   K M  + +      D NL I  P +   + 
Sbjct: 114 GAQAVITG-----VCETDFSGYPDCRNDFVKAMNSALVQGM---DRNLDIVTPLMWLNKA 165

Query: 176 DIRSFLLQR 184
           +  +   Q 
Sbjct: 166 ETWALADQY 174


>gi|241206474|ref|YP_002977570.1| exsB protein [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860364|gb|ACS58031.1| exsB protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 236

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS+ L    H V +++         +S D+  R   + E+ + +   SRL 
Sbjct: 4   IVV-CSGGLDSVTLA---HKVAAEQQL----IGLVSFDYGQRH--RKELDFAARCASRLA 53

Query: 82  IAHSVVSWKNSKPQTGLMA 100
           + + ++   +        A
Sbjct: 54  VPYHIIDIASIGGHLSGSA 72


>gi|152985472|ref|YP_001346731.1| GMP synthase [Pseudomonas aeruginosa PA7]
 gi|150960630|gb|ABR82655.1| GMP synthase [Pseudomonas aeruginosa PA7]
          Length = 527

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 46/289 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E     VR+ V  + +L+ +SGG DS  +   LH  + D      + + + VD+  L
Sbjct: 214 NIVEDAIATVRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLL 267

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALIS 111
           R    D+V   +     + +   V+         G +A             R        
Sbjct: 268 RLHEGDQVM--AMFAENMGVK--VIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDE 323

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  K  +   +     + D +E+      +      +        +  D+   +  P   
Sbjct: 324 EATKLQDVKFLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRE 380

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVN 231
             ++++R   L+  + +       D  +     R          L ++      +  +V 
Sbjct: 381 LFKDEVRKIGLELGLPY-------DMVY-----RH---PFPGPGLGVR------ILGEVK 419

Query: 232 NAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
              A L+ +   + +  + A         + ++F  ++    +  G+  
Sbjct: 420 KEYADLLRQADHIFIEELRAFDWYHKTSQAFVVFQPVKSVGVVGDGRRY 468


>gi|318043016|ref|ZP_07974972.1| GMP synthase [Synechococcus sp. CB0101]
          Length = 531

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           VR  V    +L+A+SGG DS  L   LH  + D+
Sbjct: 221 VRRQVGDKRVLLALSGGVDSSTLAFLLHKAIGDQ 254


>gi|297182319|gb|ADI18487.1| ATP-utilizing enzymes of the PP-loop superfamily [uncultured
           Verrucomicrobiales bacterium HF4000_13K17]
          Length = 273

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 25/140 (17%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           + L+ ++S+R  +R        LVA SGG DS+ L       L  +    I         
Sbjct: 3   LGLAKLDSLRAVLRGY---GSCLVAYSGGVDSVLLAKVARDELGGKMLAAI--------- 50

Query: 61  CLRETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALI 110
                +    + E+    ++ +       ++       +             +   +  +
Sbjct: 51  ---ADSPSLPRRELEEAKNIAAEFGFPLEILRTAEFTNEDYTSNPVNRCYYCKHELFTHL 107

Query: 111 SEHAKTINATLIMTAHTFDD 130
              A      +I       D
Sbjct: 108 EPLASERGMRVIAYGENASD 127


>gi|114776442|ref|ZP_01451487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mariprofundus ferrooxydans PV-1]
 gi|114553272|gb|EAU55670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mariprofundus ferrooxydans PV-1]
          Length = 374

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 60/220 (27%), Gaps = 46/220 (20%)

Query: 1   MFLSPIESVRFFVRSL--VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M     E  R  ++ L  +    ++ A+SGG DS  + + L     D     +       
Sbjct: 1   MSDEIAEIARNIIKELAPLKGVRVIAAMSGGVDSSVMAVLLKEAGVDVIGVFLNVW---- 56

Query: 59  DHCLRETAKDEVRY------------VSDVCSRLRIAHS----------------VVSWK 90
                + ++DEV                 V   + I                   +  ++
Sbjct: 57  -----DYSRDEVNRHGSCCSLEDSYDARRVADHIGIPFYAMDMRDEFRRDVIDPFIQDYE 111

Query: 91  NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKG 147
             +         R  ++  + E A  + A  + T H     DD       +      ++ 
Sbjct: 112 TGRTPNPCERCNRFVKFGALLEAADKLEAAYVATGHYVRRRDDNDGIHLFKGNDARKDQS 171

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             L+    T        I  P     ++D R       + 
Sbjct: 172 YFLA----TTNRAQAERILFPVGGLEKDDTRRLAHFYKLP 207


>gi|296451277|ref|ZP_06893017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP08]
 gi|296880371|ref|ZP_06904334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP07]
 gi|296259883|gb|EFH06738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP08]
 gi|296428612|gb|EFH14496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile NAP07]
          Length = 361

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 34/137 (24%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE------ 69
           +     +++ +SGG DS      L     D     +K          ++    E      
Sbjct: 1   MFMNKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKL--------WQDDDDVEIEGGCC 52

Query: 70  ----VRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-ARYAL 109
               V     V +++ I   V++++    +                    A  +  ++  
Sbjct: 53  SLSAVEDARRVANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDD 112

Query: 110 ISEHAKTINATLIMTAH 126
             + A+ I    + T H
Sbjct: 113 FYKKARQIGCDYVATGH 129


>gi|168700409|ref|ZP_02732686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gemmata obscuriglobus UQM 2246]
          Length = 357

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 58/197 (29%), Gaps = 43/197 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------RET-----AKD 68
           A +++A+SGG DS    + L      +    I     +  H        R+      +  
Sbjct: 2   ARVVLAMSGGVDSSASAVLLKK----QGHEVIGLFMRTGTHGHDQPDERRDNKKGCCSAI 57

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR---------------YALISEH 113
           +      V  +L I    + +++   +     A    R               +  +   
Sbjct: 58  DAGDARRVADKLDIPFYALDFESEFNRIIDYFADEYVRGRTPNPCVVCNNWLKFGQLWTF 117

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PF 169
            + + A  I T H           + +     KG+        +L+ +   +      P 
Sbjct: 118 GQKLGADFIATGHYA---------QVRNGELHKGVDADKDQSYVLHGIKREVLPHLLFPV 168

Query: 170 LRCRREDIRSFLLQRNI 186
               +  IR F  + ++
Sbjct: 169 GGYTKPQIRQFAREASL 185


>gi|157376255|ref|YP_001474855.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella sediminis HAW-EB3]
 gi|226739735|sp|A8FY04|GUAA_SHESH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157318629|gb|ABV37727.1| GMP synthase, large subunit [Shewanella sediminis HAW-EB3]
          Length = 525

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  +    +++ +SGG DS  + + LH  + D+       + + VD+  L
Sbjct: 212 SIIEDAVERLKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGDK------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R   A   +           +    V+ +N         A  EA+  +I           
Sbjct: 266 RLNEADQVMDM---FGDHFGLNIVHVNAENRFLDAMKGEADPEAKRKIIGHVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 SKKCKNAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|78066768|ref|YP_369537.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Burkholderia sp. 383]
 gi|91206798|sp|Q39F73|GUAA_BURS3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77967513|gb|ABB08893.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia sp. 383]
          Length = 539

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             + IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 205 MKNHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 258

Query: 62  L 62
           L
Sbjct: 259 L 259


>gi|321263847|ref|XP_003196641.1| glutamine amidotransferase (glutamine-hydrolyzing) [Cryptococcus
           gattii WM276]
 gi|317463118|gb|ADV24854.1| Glutamine amidotransferase (glutamine-hydrolyzing), putative
           [Cryptococcus gattii WM276]
          Length = 544

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVC 77
              ++ AVSGG DS      +H  + DR      F AI VD+  LR   KDE + V  + 
Sbjct: 231 KGQVIGAVSGGVDSTVAAKLMHEAIGDR------FHAIMVDNGVLR---KDEAKKVHKML 281

Query: 78  S-RLRIAHSVVSWKN--SKPQTGLMAAAREA 105
           +  L ++ +VV           G+    R+ 
Sbjct: 282 TIDLGVSLTVVDASELFLARLKGVEDPERKR 312


>gi|317503468|ref|ZP_07961505.1| GMP synthase [Prevotella salivae DSM 15606]
 gi|315665419|gb|EFV05049.1| GMP synthase [Prevotella salivae DSM 15606]
          Length = 514

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +++ +    +++ +SGG DS      L+  + D        + I VDH  L
Sbjct: 198 SFVESTVAELKAQLGNDRVILGLSGGVDSSVCATLLNKAIGDH------LTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|238853983|ref|ZP_04644340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 202-4]
 gi|238833428|gb|EEQ25708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lactobacillus gasseri 202-4]
          Length = 375

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 37/193 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            ++V +SGG DS    + L     D      +++     S +        TA ++   V 
Sbjct: 8   RVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDSGVC-------TATEDYEDVK 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTIN 118
            V   + I +  ++++    +             R          E ++    + A  ++
Sbjct: 61  KVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLD 120

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           A  I   H      D+      MR +    ++   LS +      D    +  P     +
Sbjct: 121 ADYIAMGHYAATKVDENGIVHMMRPKDGNKDQTYFLSQLSQ----DQLKKVIFPLANLTK 176

Query: 175 EDIRSFLLQRNIS 187
             +R   +   ++
Sbjct: 177 PQVREIAIYAGLA 189


>gi|37522184|ref|NP_925561.1| GMP synthase [Gloeobacter violaceus PCC 7421]
 gi|44887933|sp|Q7NHC2|GUAA_GLOVI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|35213184|dbj|BAC90556.1| GMP synthetase [Gloeobacter violaceus PCC 7421]
          Length = 551

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45
           E++R  VR+ V    +L+A+SGG DS  L   LH  + D
Sbjct: 236 EAIRE-VRARVGDKRVLLALSGGVDSSTLAFLLHRAIGD 273


>gi|291451817|ref|ZP_06591207.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           albus J1074]
 gi|291354766|gb|EFE81668.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           albus J1074]
          Length = 530

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 21/188 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V     +  +SGG DS  +  AL            + + + VDH L R+   ++V 
Sbjct: 219 IRARVGTKRAICGLSGGVDS-AVAAALVQ-----KAIGTQLTCVYVDHGLMRKGETEQVE 272

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM-TAHTF 128
             +V+    +L++  +   +  +          R+          +   A ++   A   
Sbjct: 273 KDFVAATGVQLKVVDAEERFLTALAGVSDPEQKRKIIGREFIRVFEQAQAEIVAEAAGEG 332

Query: 129 DDQLETVYMRSQ---------RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +D      ++                  +        +  D+   +  P     ++++R 
Sbjct: 333 EDVA--FLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPDDIEFELVEPLRMLFKDEVRM 390

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 391 VGQELGLP 398


>gi|228995353|ref|ZP_04155038.1| hypothetical protein bpmyx0001_59560 [Bacillus pseudomycoides DSM
          12442]
 gi|228764395|gb|EEM13258.1| hypothetical protein bpmyx0001_59560 [Bacillus pseudomycoides DSM
          12442]
          Length = 221

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   L  A+            +  A++ ++  R   K E+   +++ + L
Sbjct: 8  IVV-FSGGQDSTTCLFWAMQQFA--------EVEAVTFNYNQRH--KLEIDCAAEIANEL 56

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 57 GIKHTVLD 64


>gi|229002866|ref|ZP_04160742.1| hypothetical protein bmyco0003_57960 [Bacillus mycoides Rock3-17]
 gi|229008540|ref|ZP_04165967.1| hypothetical protein bmyco0002_53200 [Bacillus mycoides Rock1-4]
 gi|228752735|gb|EEM02336.1| hypothetical protein bmyco0002_53200 [Bacillus mycoides Rock1-4]
 gi|228758391|gb|EEM07562.1| hypothetical protein bmyco0003_57960 [Bacillus mycoides Rock3-17]
          Length = 221

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   L  A+            +  A++ ++  R   K E+   +++ + L
Sbjct: 8  IVV-FSGGQDSTTCLFWAMQQFA--------EVEAVTFNYNQRH--KLEIDCAAEIANEL 56

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 57 GIKHTVLD 64


>gi|86359301|ref|YP_471193.1| succinoglycan biosynthesis transcriptional regulator protein
           [Rhizobium etli CFN 42]
 gi|110816251|sp|Q2K3X0|QUEC_RHIEC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|86283403|gb|ABC92466.1| succinoglycan biosynthesis transcriptional regulator protein
           [Rhizobium etli CFN 42]
          Length = 236

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 10/79 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I+V  SGG DS+ L    H   S+          +S D+  R   + E+ + +   +RL 
Sbjct: 4   IVV-CSGGLDSVSLA---HRTASEEQL----IGLVSFDYGQRH--RKELDFAAKCAARLA 53

Query: 82  IAHSVVSWKNSKPQTGLMA 100
           + H ++            A
Sbjct: 54  VPHHIIDIAAIGGHLSGSA 72


>gi|329297572|ref|ZP_08254908.1| GMP synthase [Plautia stali symbiont]
          Length = 526

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  V    +++ +SGG DS    + LH  + +R       + + VD+  L
Sbjct: 213 KIIEDAVERIREQVGEDRVILGLSGGVDSSVTAMLLHRAIGER------LTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALI-----SE 112
           R     E   V D       +    V     + ++        A R+    +       E
Sbjct: 267 RLN---EAEQVMDMFGDHFGLNIVHVAAEGRFLDALAGENDPEAKRKIIGRVFVEVFDEE 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    +        +        +  ++ + +  P    
Sbjct: 324 ALKLTDVKWLAQGTIYPDVIES---AASTTGKAHVIKSHHNVGGLPKEMKMGLIEPLKEL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 381 FKDEVRKIGLELGLPY 396


>gi|303235866|ref|ZP_07322469.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella disiens FB035-09AN]
 gi|302483739|gb|EFL46731.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella disiens FB035-09AN]
          Length = 513

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 71/198 (35%), Gaps = 33/198 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    ++  +    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 197 SYVETTVKELKEQLGNDRVILGLSGGVDSSVCATLLNRAIGK------NLTCIFVDHGML 250

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALIS 111
           R+       +   + +   +  +V+    S+           P+       R+      +
Sbjct: 251 RKN-----EFAKVMEAYEGLGLNVIGVDASEKFFADLAGVTDPEQKRKIIGRDFVEVFNA 305

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPF 169
           E  K  +A  +     + D++E++        +  GM +        +  ++NL +  P 
Sbjct: 306 EAKKITDAKWLAQGTIYPDRIESL--------SITGMVIKSHHNVGGLPKEMNLKLCEPL 357

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 358 QWLFKDEVRRVGYELGMP 375


>gi|222054503|ref|YP_002536865.1| PP-loop domain-containing protein [Geobacter sp. FRC-32]
 gi|221563792|gb|ACM19764.1| PP-loop domain-containing protein [Geobacter sp. FRC-32]
          Length = 270

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 7  ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
          E ++  ++ +     +LVA SGG DS  LL   H +L D+
Sbjct: 9  EKLKSILQEM---GSVLVAFSGGVDSTFLLRVAHDLLGDK 45


>gi|94971670|ref|YP_593718.1| ExsB [Candidatus Koribacter versatilis Ellin345]
 gi|94553720|gb|ABF43644.1| ExsB [Candidatus Koribacter versatilis Ellin345]
          Length = 257

 Score = 45.3 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 7  ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
          E+V+  V+       ++V +SGG DS        + L+ R +G     A+ V +  R  A
Sbjct: 19 EAVK--VQRGDTGKAVVV-LSGGMDSTV-----CATLAVREYGAENIGALHVSYGQRTAA 70

Query: 67 KDEVRYVSDVCSRLRI 82
          +++  + + V  RL I
Sbjct: 71 REKQAFAA-VAERLGI 85


>gi|315608621|ref|ZP_07883602.1| GMP synthase [Prevotella buccae ATCC 33574]
 gi|315249660|gb|EFU29668.1| GMP synthase [Prevotella buccae ATCC 33574]
          Length = 514

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 35/199 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    ++  +    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 198 SFVESTVAELKRQLGNDRVILGLSGGVDSSVCATLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKNS-----------KPQTGLMAAAREARYALI 110
           R+       +   V      +  +VV    S            P+       R+      
Sbjct: 252 RKN-----EF-KKVMEAYEGLGLNVVGVDASDKFFKDLEGVTDPEKKRKIIGRDFVEVFN 305

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRP 168
           +E  K  +A  +     + D++E++        +  GM +        +  +++L +  P
Sbjct: 306 AEAKKITDAKWLAQGTIYPDRIESL--------SITGMVIKSHHNVGGLPKEMHLQLCEP 357

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R    +  + 
Sbjct: 358 LQWLFKDEVRRVGYELGMP 376


>gi|288926453|ref|ZP_06420373.1| GMP synthase, C- domain protein [Prevotella buccae D17]
 gi|288336744|gb|EFC75110.1| GMP synthase, C- domain protein [Prevotella buccae D17]
          Length = 331

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 35/199 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    ++  +    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 15  SFVESTVAELKRQLGNDRVILGLSGGVDSSVCATLLNKAIGK------NLTCIFVDHGML 68

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKNS-----------KPQTGLMAAAREARYALI 110
           R+       +   V      +  +VV    S            P+       R+      
Sbjct: 69  RKN-----EF-KKVMEAYEGLGLNVVGVDASDKFFKDLEGVTDPEKKRKIIGRDFVEVFN 122

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRP 168
           +E  K  +A  +     + D++E++        +  GM +        +  +++L +  P
Sbjct: 123 AEAKKITDAKWLAQGTIYPDRIESL--------SITGMVIKSHHNVGGLPKEMHLQLCEP 174

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R    +  + 
Sbjct: 175 LQWLFKDEVRRVGYELGMP 193


>gi|302382750|ref|YP_003818573.1| GMP synthase, large subunit [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193378|gb|ADL00950.1| GMP synthase, large subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 519

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 63/190 (33%), Gaps = 31/190 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V  A ++  +SGG DS    + +H  + D      + + + VD   LR   KDE  
Sbjct: 215 IREQVGSAKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDTGLLR---KDEAT 265

Query: 72  YVSDVCSRL-RIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V+ +      I    V             S P+T      R        E  K   A  
Sbjct: 266 QVTTLFREHYNIPLIHVDASKEFLGELAGQSDPETKRKIIGRVFIEVFDREAGKIDGAEF 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDI 177
           +     + D +E+V        +  G             +   + L +  P     ++++
Sbjct: 326 LAQGTLYPDVIESV-------SSSSGKAHVIKSHHNVGGLPDYMKLKLVEPLRELFKDEV 378

Query: 178 RSFLLQRNIS 187
           R+   +  ++
Sbjct: 379 RALGRELGLT 388


>gi|254788130|ref|YP_003075559.1| asparagine synthase family protein [Teredinibacter turnerae T7901]
 gi|237683896|gb|ACR11160.1| asparagine synthase family protein [Teredinibacter turnerae T7901]
          Length = 432

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           + VA+SGG DS  +        ++         A+++D    E    +      + ++L 
Sbjct: 164 VFVALSGGLDSSTMAHYAKRFCANP-------IAVTLDLGGSE----DAEKAQKIAAQLA 212

Query: 82  IAHSVVSWKNSKPQTGLMAA---AREARYALISEHAKTINA 119
           I H V      +    +  A    ++ R    + H   +N 
Sbjct: 213 IRHCVFGVSEDEILAAVEKAPLLCQDFRD--FNVHCAALNC 251


>gi|168493347|ref|ZP_02717490.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC3059-06]
 gi|183576575|gb|EDT97103.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Streptococcus pneumoniae CDC3059-06]
          Length = 520

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 40/193 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE------ 69
           V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+      
Sbjct: 223 VGDKRVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVMDMLG 276

Query: 70  ---------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
                             +L           S P+        E  Y    E +K  +  
Sbjct: 277 GKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKLKDVK 328

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E            + +        +  D+   +  P     ++++R+ 
Sbjct: 329 FLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRAL 382

Query: 181 LLQRN----ISWC 189
             +      I W 
Sbjct: 383 GTELGMPDHIVWR 395


>gi|78047602|ref|YP_363777.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|123585152|sp|Q3BTY6|MNMA_XANC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78036032|emb|CAJ23723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 378

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 49/199 (24%), Gaps = 51/199 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
            I++ VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   RIVLGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L I           W           AA           RE ++    + 
Sbjct: 52  RRDAVAVCGVLGIPFHFRDFSGEYWNGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H         +      R  R           +       L   +  P
Sbjct: 112 AQALGAERIATGHYAQVAHRGGR-----WRLLRGADRGKDQSYFLHQLGQAQLAATLF-P 165

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +  +R       + 
Sbjct: 166 IGDLEKSTLRRIAQDAGLP 184


>gi|167763337|ref|ZP_02435464.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC
           43183]
 gi|167698631|gb|EDS15210.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC
           43183]
          Length = 365

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 55/191 (28%), Gaps = 35/191 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVDHCLRETAKDEVRYVSDVC 77
           +I V +SGG DS  ++  L       S   IK     A  +D     +A++++   S V 
Sbjct: 2   NIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKIGKDDAEYMD----CSAEEDLEMASAVA 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKTIN--ATLI 122
            R  ++  VV             A  +                       + +       
Sbjct: 58  RRYGLSLEVVDLHREYWDNVAAYAIEKVSRGFTPNPDVMCNKLIKFGCFEQRVGRHFDFT 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLRCRRED 176
            T H       TV           G  L  + D   +   +       +  P     +++
Sbjct: 118 ATGHYAT----TVLQN---GKTWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQE 170

Query: 177 IRSFLLQRNIS 187
           +R   L+  + 
Sbjct: 171 VRDIALKAQLP 181


>gi|118470807|ref|YP_885988.1| GMP synthase [Mycobacterium smegmatis str. MC2 155]
 gi|118172094|gb|ABK72990.1| glutamine-hydrolyzing GMP synthase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 520

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 67/190 (35%), Gaps = 25/190 (13%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
            VR  +     +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   + +V
Sbjct: 210 AVREQIGDGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGERAQV 263

Query: 71  R--YVSDVCSRL---RIAHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTI------ 117
           +  +V+   ++L    +A   +      + P+       RE   A        +      
Sbjct: 264 QRDFVAATGAKLVTVDVADRFLEALTGVTNPEGKRKIIGREFIRAFEGAVRDLVEDEGSG 323

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +   ++    + D +E+             +        +  DL   +  P     ++++
Sbjct: 324 DIDFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDLKFKLVEPLRLLFKDEV 378

Query: 178 RSFLLQRNIS 187
           R+   +  + 
Sbjct: 379 RAVGRELGLP 388


>gi|52079921|ref|YP_078712.1| queuosine (Q) synthesis protein QueC [Bacillus licheniformis ATCC
          14580]
 gi|52785292|ref|YP_091121.1| YkvJ [Bacillus licheniformis ATCC 14580]
 gi|319646262|ref|ZP_08000492.1| queuosine biosynthesis protein queC [Bacillus sp. BT1B_CT2]
 gi|81385781|sp|Q65KI6|QUEC_BACLD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|52003132|gb|AAU23074.1| Queuosine (Q) synthesis protein QueC [Bacillus licheniformis ATCC
          14580]
 gi|52347794|gb|AAU40428.1| YkvJ [Bacillus licheniformis ATCC 14580]
 gi|317392012|gb|EFV72809.1| queuosine biosynthesis protein queC [Bacillus sp. BT1B_CT2]
          Length = 219

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   LL AL            +  A++  +  R   K E+     + ++L
Sbjct: 7  IVV-FSGGQDSTTCLLWALRQFQ--------EVEAVTFQYNQRH--KQEIEVAKKIAAKL 55

Query: 81 RIAHSVVSWK 90
           + H ++  +
Sbjct: 56 GVKHHLLDME 65


>gi|219119443|ref|XP_002180482.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407955|gb|EEC47890.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 538

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 70/207 (33%), Gaps = 47/207 (22%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCL 62
             IE VR     +    H+L AVSGG DS    + +   + DR      F A+ VD  CL
Sbjct: 225 EFIEEVRA---KVGPDGHVLGAVSGGVDSTVAAVLMTRAIGDR------FHAVLVDNGCL 275

Query: 63  RETAKDEVRYVSDVCSR-LRIAHSVVS-----------WKNSKPQTGL----------MA 100
           R   KDE   V         +    V              + + +  +            
Sbjct: 276 R---KDEASAVLKRMREDCGVNLRCVDASDRFLDLLKGVTDPEKKRKIIGGTFIDVFQEE 332

Query: 101 AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
           AA+  R        ++     ++    + D +E++  +      +    + G+  +    
Sbjct: 333 AAKIER--------ESGPCQYLLQGTLYPDVIESISYKGPSATIKTHHNVGGLPAS---- 380

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
           +NL +  P     ++++R   +   I 
Sbjct: 381 MNLKLIEPLRELFKDEVRELGMALGID 407


>gi|323497848|ref|ZP_08102859.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326]
 gi|323317076|gb|EGA70076.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326]
          Length = 369

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 119 VLDADYIAMGH 129


>gi|323494972|ref|ZP_08100063.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546]
 gi|323310767|gb|EGA63940.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546]
          Length = 378

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 11  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 62

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 63  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 122

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 123 VLDADYIAMGH 133


>gi|269960819|ref|ZP_06175190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi 1DA3]
 gi|269834483|gb|EEZ88571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi 1DA3]
          Length = 380

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 119 VLDADYIAMGH 129


>gi|269967776|ref|ZP_06181823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 40B]
 gi|269827596|gb|EEZ81883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 40B]
          Length = 430

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 63  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 114

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 115 AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 174

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 175 VLDADYIAMGH 185


>gi|261252577|ref|ZP_05945150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio orientalis CIP 102891]
 gi|260935968|gb|EEX91957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio orientalis CIP 102891]
          Length = 378

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 11  KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 62

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 63  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 122

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 123 VLDADYIAMGH 133


>gi|260172511|ref|ZP_05758923.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2]
          Length = 385

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 46/242 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS     A+  + +      + F    ++      + + +    ++  R
Sbjct: 6   KRVLLGMSGGTDSSV--AAMRLLEAGYEVIGVTFRFYELN-----GSTEYLEDARNLAER 58

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIM 123
           L I H     +    +  +        A R            ++ L+++ A  +    I 
Sbjct: 59  LGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGIFYIA 118

Query: 124 TAH-TFDDQL-ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T H   + QL  T Y+    D  +     L G+   IL  +      P     + + R +
Sbjct: 119 TGHYAQNIQLNNTFYITYAADSDKDQTFFLWGLKQDILCRM----LLPMGDITKVEARVW 174

Query: 181 LLQRN----------ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             +            I  C  P      + R  +R ++   +  AL  + +  ++ +V V
Sbjct: 175 AAEHGFRKVATKKDSIGVCFCP----MDY-RTFLRNWLAQ-NSAALAGEEQMMEEDQVLV 228

Query: 231 NN 232
            +
Sbjct: 229 ED 230


>gi|253998936|ref|YP_003050999.1| GMP synthase large subunit [Methylovorus sp. SIP3-4]
 gi|253985615|gb|ACT50472.1| GMP synthase, large subunit [Methylovorus sp. SIP3-4]
          Length = 540

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 217 EAVER-IRQQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 265


>gi|207723384|ref|YP_002253783.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) protein [Ralstonia solanacearum MolK2]
 gi|206588583|emb|CAQ35546.1| gmp synthase [glutamine-hydrolyzing] (glutamineamidotransferase)
           (gmp synthetase) protein [Ralstonia solanacearum MolK2]
          Length = 547

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 213 MRDHIEEAVKSIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 266

Query: 62  L-RETAKDEVRYVSDVCS-RLR--IAHSVVSWK-------NSKPQTGLMAAAREARYALI 110
           L R     E + V D+   RL   + H+  S +        + P+       RE      
Sbjct: 267 LLRLN---EGQMVLDMFEGRLHAKVVHANASEQFLGHLAGVTDPEAKRKIIGREFVEVFQ 323

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           +E  K  NA  +     + D +E+      +      +        +   L L +  P  
Sbjct: 324 AEAKKLTNAKWLAQGTIYPDVIES---GGAKTKKATTIKSHHNVGGLPETLGLKLLEPLR 380

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R   +   +  
Sbjct: 381 DLFKDEVRELGVALGLPP 398


>gi|163801953|ref|ZP_02195849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. AND4]
 gi|159174094|gb|EDP58902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. AND4]
          Length = 374

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 119 VLDADYIAMGH 129


>gi|153835174|ref|ZP_01987841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi HY01]
 gi|148868331|gb|EDL67456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi HY01]
          Length = 374

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 119 VLDADYIAMGH 129


>gi|91226036|ref|ZP_01260963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 12G01]
 gi|91189477|gb|EAS75754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio alginolyticus 12G01]
          Length = 374

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 119 VLDADYIAMGH 129


>gi|57168146|ref|ZP_00367285.1| GMP synthase [Campylobacter coli RM2228]
 gi|305431705|ref|ZP_07400874.1| GMP synthase [Campylobacter coli JV20]
 gi|57020520|gb|EAL57189.1| GMP synthase [Campylobacter coli RM2228]
 gi|304445300|gb|EFM37944.1| GMP synthase [Campylobacter coli JV20]
          Length = 511

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 27/187 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L + + D      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGKDKVLCAVSGGVDSSVVAALLANAIKD------QVIVVFVDNGLLRSDEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTINATL 121
           ++    + L I    +S   SK     +A      + R         +  E AK      
Sbjct: 263 FMFK--NTLGINL--ISIDASKIFLDRLAGVTDPEQKRKIIGNTFIEIFEEEAKKHKDVK 318

Query: 122 IMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +   T   D +E+  + + +               +   +NL +  P     ++++R+ 
Sbjct: 319 FLAQGTLYTDIIESSVIGASKTIKS-----HHNVGGLPEKMNLKLVEPLKEIFKDEVRAL 373

Query: 181 LLQRNIS 187
            ++  +S
Sbjct: 374 GIELGLS 380


>gi|325982651|ref|YP_004295053.1| GMP synthase, large subunit [Nitrosomonas sp. AL212]
 gi|325532170|gb|ADZ26891.1| GMP synthase, large subunit [Nitrosomonas sp. AL212]
          Length = 520

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 27/195 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E     +R+ V    +++ +SGG DS      +H  + D      + + + VD+  LR 
Sbjct: 209 VEEAISRIRAAVGSDQVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRA 262

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISE 112
               E + V +     L +   V+    S+           P+T      RE       E
Sbjct: 263 N---EAKQVRETFAGNLAVK--VIHIDASRDFYRSLTGISDPETKRKIIGREFVEVFQRE 317

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK  +A  +     + D +E+      +      +        +   L+L +  P    
Sbjct: 318 SAKINDAKWLAQGTIYPDVIES---AGGKTKKAHTIKSHHNVGGLPETLHLKLLEPLREL 374

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   L   + 
Sbjct: 375 FKDEVRELGLVLGLP 389


>gi|187940192|gb|ACD39320.1| hypothetical protein PACL_0661 [Pseudomonas aeruginosa]
          Length = 222

 Score = 45.3 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             I+V  SGG DS   L+  HS    R    +        H        E+ Y +  C+
Sbjct: 15 KRKIVVLHSGGLDSTVCLLLAHS----RGHEVVSLGVSYNQHH-----HVELDYAAAQCA 65

Query: 79 RLRIAHSVVSWKNSKP 94
          R  I   +VS   SKP
Sbjct: 66 RYGIERKIVSVAWSKP 81


>gi|300864149|ref|ZP_07109043.1| GMP synthase [Oscillatoria sp. PCC 6506]
 gi|300337839|emb|CBN54189.1| GMP synthase [Oscillatoria sp. PCC 6506]
          Length = 537

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           ES+R  +R+ V    +L+A+SGG DS  L   LH  +
Sbjct: 222 ESIRE-IRARVGDKRVLLALSGGVDSSTLAFLLHKAI 257


>gi|300784984|ref|YP_003765275.1| ExsB family protein [Amycolatopsis mediterranei U32]
 gi|299794498|gb|ADJ44873.1| ExsB family protein [Amycolatopsis mediterranei U32]
          Length = 262

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 62/188 (32%), Gaps = 37/188 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVR 71
            RS   PA   VA SGG+DS     AL    + R+ G     A++ D     + A  E+ 
Sbjct: 2   ARSPSAPAPSAVAFSGGTDS-----ALVLAAAVRALGPADVLAVTAD---SASLAAVELA 53

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKTINATLIMT 124
               + + L + H          + G  A  R+  Y         I+E A       + T
Sbjct: 54  GARRIAAELGVRHLT-PETGELAEPGYAANGRQRCYFCKTTVLTTIAEVAVAHGFPALAT 112

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLL 182
               DD                   +      I     L +  P   L   +ED+R+   
Sbjct: 113 GTNADD------------------AVDPFRPGIRAGDELGVHTPLRTLGLSKEDVRAIAR 154

Query: 183 QRNISWCE 190
           +  ++W +
Sbjct: 155 RWGLAWAD 162


>gi|257453848|ref|ZP_05619126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enhydrobacter aerosaccus SK60]
 gi|257448775|gb|EEV23740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 57/199 (28%), Gaps = 48/199 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS    + L     D     +K               D   Y        
Sbjct: 19  RVIVGMSGGVDSSVTAVLLKQAGFDVEGLFMKNW----------EEDDGTEYCTAMTDLA 68

Query: 74  --SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
               V  ++ I     ++                +A R          E ++    ++A 
Sbjct: 69  DAQAVADKIGIKLHTANFAMEYWDRVFEHFLAEYSAGRTPNPDILCNKEVKFKAFLDYAL 128

Query: 116 TINATLIMTAHTF----DDQLETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           T+ A  I T H       D  ET     +R   +  ++   L  +    +         P
Sbjct: 129 TLGADYIATGHYARRGFSD--ETGKAPLLRGLDNNKDQSYFLHAVAGDKIAKT----LFP 182

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R    Q +++
Sbjct: 183 VGALEKPEVRRIAEQYDLA 201


>gi|193075024|gb|ACF08514.1| GuaA [Pseudomonas aeruginosa]
          Length = 281

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V  + +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 73  VRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 126

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
             +     + +   V+         G +A             R        E  K  +  
Sbjct: 127 --AMFAENMGVK--VIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATKLQDVK 182

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  D+   +  P     ++++R  
Sbjct: 183 FLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRKI 239

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 240 GLELGLPY 247


>gi|88809316|ref|ZP_01124824.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 7805]
 gi|88786535|gb|EAR17694.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 7805]
          Length = 528

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E+V+  VRS V    +L+A+SGG DS  L   L   + D+
Sbjct: 213 EAVKQ-VRSQVGDKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|296315198|ref|ZP_06865139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria polysaccharea ATCC 43768]
 gi|296837925|gb|EFH21863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria polysaccharea ATCC 43768]
          Length = 367

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 52/194 (26%), Gaps = 36/194 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS---- 74
           P++I+V +SGG DS      L           ++               D   Y S    
Sbjct: 7   PSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIKQD 56

Query: 75  -----DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
                 V   + I   +V++                +A R          E ++    ++
Sbjct: 57  SFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDY 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A    A  I T H    ++        +           +     + L   I  P     
Sbjct: 117 AVVQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIF-PLGGLE 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  + 
Sbjct: 176 KPEVRRLAAEFKLP 189


>gi|260772756|ref|ZP_05881672.1| queuosine Biosynthesis QueC ATPase [Vibrio metschnikovii CIP 69.14]
 gi|260611895|gb|EEX37098.1| queuosine Biosynthesis QueC ATPase [Vibrio metschnikovii CIP 69.14]
          Length = 232

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 45/190 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5   VVV-FSGGQDSTTCLVQALQEFD--------EVHAITFDYGQRH--KLEIEVAQQLALKL 53

Query: 81  RI------------AHSVVSWKNSKPQTGLMAAA----------REARYALISEH-AKTI 117
            +              ++ S             A          R   +  ++   A  I
Sbjct: 54  GVKAHKVMDVSLLNELAISSLTRDDIPVSHELQANGLPNSFVPGRNILFLTLAGIYAYQI 113

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  I+T        ET +      R+   K M  + +      D  L I  P +   + 
Sbjct: 114 GADTIITG-----VCETDFSGYPDCRNDFVKAMNHALVQGM---DRQLTIRTPLMWLNKA 165

Query: 176 DIRSFLLQRN 185
           +  +   Q  
Sbjct: 166 ETWALADQYQ 175


>gi|255655293|ref|ZP_05400702.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-23m63]
          Length = 359

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 34/133 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---------- 69
             +++ +SGG DS      L     D     +K          ++    E          
Sbjct: 3   KKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKL--------WQDDDDVEIEGGCCSLSA 54

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-ARYALISEH 113
           V     V +++ I   V++++    +                    A  +  ++    + 
Sbjct: 55  VEDARRVANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKK 114

Query: 114 AKTINATLIMTAH 126
           A+ I    + T H
Sbjct: 115 ARQIGCDYVATGH 127


>gi|260790337|ref|XP_002590199.1| hypothetical protein BRAFLDRAFT_283497 [Branchiostoma floridae]
 gi|229275389|gb|EEN46210.1| hypothetical protein BRAFLDRAFT_283497 [Branchiostoma floridae]
          Length = 688

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R +V    +LV VSGG DS      LH  L      K +  A+ +D+   R+    E +
Sbjct: 225 IREIVGKHKVLVLVSGGVDSAVCAALLHKALD-----KDQVIAVHIDNGFMRKN---ESQ 276

Query: 72  YVSDVCSRLRIAHSVVS 88
            V +  +RL +   +V+
Sbjct: 277 MVYESLTRLGLDLKMVN 293


>gi|164427028|ref|XP_959751.2| GMP synthase [Neurospora crassa OR74A]
 gi|157071575|gb|EAA30515.2| GMP synthase [Neurospora crassa OR74A]
          Length = 537

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 33/197 (16%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R LV P   +L AVSGG DS      +   + DR      F A+ V++  +R    DE 
Sbjct: 219 IRDLVGPEGQVLGAVSGGVDSTVAAKLMKEAIGDR------FWAVLVNNGVMR---LDEC 269

Query: 71  RYV-SDVCSRLRIAHSVVSW--------------KNSKPQTG------LMAAAREARYAL 109
             V  D+   L I  +V+                +  +   G        A A++   A 
Sbjct: 270 EQVERDLKQHLGINLTVIDASKDFLEGLKGLHDPEQKRKFIGGKFIDVFEAEAQKIEEAA 329

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
                K       +    + D +E++  +      +    + G+ + +     L +  P 
Sbjct: 330 AKS-GKGTKIGFFLQGTLYPDVIESLSFKGPSATIKTHHNVGGLPERMTNGQGLQLIEPL 388

Query: 170 LRCRREDIRSFLLQRNI 186
               ++++R       I
Sbjct: 389 RSLYKDEVRELGRTLGI 405


>gi|146296665|ref|YP_001180436.1| ExsB family protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410241|gb|ABP67245.1| ExsB family protein [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 285

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 46/198 (23%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
                E+++ F++SL     + +A SGG DS  L+   + VL D++       A++    
Sbjct: 9   LKEKYENLKSFLKSL---GSVAIAYSGGVDSTFLVKVAYDVLGDKAL------AVT---- 55

Query: 62  LRETA----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALIS 111
              T+    K E+         +   H ++  +       +K         ++  +  I 
Sbjct: 56  --ATSSTYPKRELEDAKKFIKEIGAKHIIIESEELEIEGFNKNPVDRCYYCKKELFEKIW 113

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF-- 169
           + AK      +     FDD      +   R       G+   C+       L +  P   
Sbjct: 114 KVAKAHGIEYVADGSNFDD------LNDFRP------GMKAACE-------LNVVSPLKV 154

Query: 170 LRCRREDIRSFLLQRNIS 187
            +  +EDIR       + 
Sbjct: 155 AKLTKEDIRKLSKYLGLP 172


>gi|322706302|gb|EFY97883.1| GMP synthase [Metarhizium anisopliae ARSEF 23]
          Length = 528

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 31/196 (15%)

Query: 13  VRSLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHCLRETAKDEV 70
           +R LV P  +++  VSGG DS      +   + DR      F AI + + C+R    +EV
Sbjct: 210 IRDLVGPKALVIGGVSGGVDSTVGATLMREAIGDR------FIAIGINNGCMRLNEFEEV 263

Query: 71  RYVSDVCSRLRIAHSVVS-----------WKNSKPQTGL---------MAAAREARYALI 110
           +   ++   L I  +VV              + + +  +            A        
Sbjct: 264 K--KNLRDHLGINLTVVDAGELFLSRLEGVTDPEKKRKIIGSTFIDVFEKEAIRIEKEA- 320

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                +      +    + D +E++  R      +      G+ + ++    L +  P  
Sbjct: 321 ENTPNSGKVEWFLQGTLYPDVIESLSWRGPSATIKTHHNTGGLPERMMNGQGLRLIEPLR 380

Query: 171 RCRREDIRSFLLQRNI 186
              ++++R+   Q  I
Sbjct: 381 LLFKDEVRAIGRQLGI 396


>gi|313201039|ref|YP_004039697.1| gmp synthase large subunit [Methylovorus sp. MP688]
 gi|312440355|gb|ADQ84461.1| GMP synthase, large subunit [Methylovorus sp. MP688]
          Length = 535

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E+V   +R  V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 212 EAVER-IRQQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 260


>gi|304313871|ref|YP_003849018.1| NAD synthetase [Methanothermobacter marburgensis str. Marburg]
 gi|302587330|gb|ADL57705.1| predicted NAD synthetase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 261

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 30/189 (15%)

Query: 7   ESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALH-SVLSDRSFGKIKFSAISVDHCL 62
           E +  F+++ V  +    +++ +SGG DS  +      ++  DR  G I           
Sbjct: 13  ERIEEFIKARVDDSRTDGVVLGLSGGVDSSTVAYLAADALGPDRVLGIIM---------- 62

Query: 63  RETAK---DEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALISEHAKTIN 118
             +A    +++++   V     I +  V  +      +G+       R + I+       
Sbjct: 63  -PSATTPPEDLKHAELVAEETGIEYETVDIEPILESFSGICGH----RASKIALANLKPR 117

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A +++  +  +        R       +   L G      Y        P     ++ +R
Sbjct: 118 ARMMVLYYHAN-----SMNRLVAGTGNRTELLVGYFTK--YGDGGVDILPIGCLYKKQVR 170

Query: 179 SFLLQRNIS 187
               +  + 
Sbjct: 171 MLAEELGVP 179


>gi|262276991|ref|ZP_06054784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HIMB114]
 gi|262224094|gb|EEY74553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha
           proteobacterium HIMB114]
          Length = 377

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 26/128 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET-----AKDEVRYVS 74
            ++VA+SGG DS  +   L     D     ++      D+  + +T     A  ++    
Sbjct: 24  KVVVAMSGGVDSSVVAALLKKDGYDVIGITLQL----FDYGKIGKTKGTCCAGKDIYDAK 79

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTIN 118
            VC +L I H V ++++   +  +   A                   ++  + + AK ++
Sbjct: 80  KVCDQLEIKHEVFNYESIFKEEVIEKFADSYIKGETPIPCVDCNQTVKFRDLFKSAKNLD 139

Query: 119 ATLIMTAH 126
           A  + T H
Sbjct: 140 ADALATGH 147


>gi|148240074|ref|YP_001225461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7803]
 gi|205828977|sp|A5GMJ9|MNMA_SYNPW RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147848613|emb|CAK24164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus sp. WH 7803]
          Length = 389

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 56/197 (28%), Gaps = 33/197 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDE 69
           +R       + V +SGG DS      L     +     +             L + A   
Sbjct: 21  LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSGKGACCAEGLVDAAG-- 78

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAA------AREARYALISEHAK- 115
                 +C +L I H VV  +++  +        G  A       +R  R    S   + 
Sbjct: 79  ------ICEQLEIPHHVVDSRDTFQREIVNGLIEGYQAGITPLPCSRCNRAVKFSPMLQW 132

Query: 116 ---TINATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
                    I T H      D+  T   R  R    +      + D +  ++   +  P 
Sbjct: 133 AQEKRGLARIATGHYARLRFDET-TGRWRLLRGLDARKDQSYFLYD-LTQEVLARVVFPL 190

Query: 170 LRCRREDIRSFLLQRNI 186
               + D R    +  +
Sbjct: 191 GELTKPDTRLEAARHGL 207


>gi|150377058|ref|YP_001313654.1| exsB protein [Sinorhizobium medicae WSM419]
 gi|150031605|gb|ABR63721.1| exsB protein [Sinorhizobium medicae WSM419]
          Length = 236

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I++  SGG DS+ L    H V +++         +S D+  R   + E+ + +    RL 
Sbjct: 4  IVI-CSGGLDSVSLA---HKVAAEQEL----VCLLSFDYGQRH--RKELDFAAVCARRLG 53

Query: 82 IAHSVVSWKNSKPQ 95
          + H ++  +     
Sbjct: 54 VPHQIIDIREIGRH 67


>gi|289670488|ref|ZP_06491563.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 130

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 39/124 (31%), Gaps = 22/124 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVCS 78
            I+V VSGG DS      L       +   ++  A   D        A+D+ R    VC 
Sbjct: 4   RIVVGVSGGVDSSVAAWKLAQQGEQIAGLFMQNWA---DDG-SGDCRAEDDRRDAVAVCG 59

Query: 79  RLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTINATLI 122
            L I           W           AA           RE ++    + A+ + A  I
Sbjct: 60  VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 119

Query: 123 MTAH 126
            T H
Sbjct: 120 ATGH 123


>gi|150402411|ref|YP_001329705.1| ExsB family protein [Methanococcus maripaludis C7]
 gi|150033441|gb|ABR65554.1| ExsB family protein [Methanococcus maripaludis C7]
          Length = 258

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 15/126 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++  +    ++VA SGG DS         ++S  +    K  A+++D+     +++ ++ 
Sbjct: 15  LKEFLNNKKVIVAYSGGVDST--------LVSKIASDNTKTLAVTIDNGF--FSENIIKK 64

Query: 73  VSDVCSRLRIAHSVVSWK-----NSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
             +   +  I    +         SK         ++     + +     N  +I+    
Sbjct: 65  AENRAKKYNIPQKTIKIDYLDEITSKDLKNRCYNCKKRIAEELRKIKNEFNYDIIVDGTI 124

Query: 128 FDDQLE 133
           ++D  E
Sbjct: 125 YNDTFE 130


>gi|148656258|ref|YP_001276463.1| GMP synthase [Roseiflexus sp. RS-1]
 gi|148568368|gb|ABQ90513.1| GMP synthase (glutamine-hydrolyzing) [Roseiflexus sp. RS-1]
          Length = 512

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 65/194 (33%), Gaps = 21/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I      VR  V    ++ A+SGG DS    + +H  + DR       + + VD+  L
Sbjct: 199 SFIAEAIARVRDQVGNGRVICALSGGVDSAVAALIVHRAIGDR------LTCVFVDNGLL 252

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH 113
           R+   ++V  V+       I    V   +           P+        +       E 
Sbjct: 253 RQGEAEQV--VATFREHFHIPLIAVDAADEFLDALAGVADPEQKRKIIGEKFVRIFEREA 310

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +   A  +     + D +E+     Q+    K          +  D+ L +  P     
Sbjct: 311 RRIEGARFLAQGTLYPDVIESKAPDRQKGVTIK---THHNVGGLPADMQLTLVEPLRYLF 367

Query: 174 REDIRSFLLQRNIS 187
           ++++R+  L   + 
Sbjct: 368 KDEVRAAGLALGLP 381


>gi|88603768|ref|YP_503946.1| GMP synthase subunit B [Methanospirillum hungatei JF-1]
 gi|88189230|gb|ABD42227.1| GMP synthase (glutamine-hydrolyzing) [Methanospirillum hungatei
           JF-1]
          Length = 305

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 65/192 (33%), Gaps = 34/192 (17%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++   ++       +++A+SGG DS          + +R         I VD  L R+ 
Sbjct: 10  EAIHR-IQEESNGEKVVIALSGGVDSSVCAELASRAIGERLIP------IYVDTGLMRKG 62

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAA-----REARYALISEHAK 115
              E + +S++   L +   VV+  +      + ++           R  R  +    A 
Sbjct: 63  ---ETKRISEIFGHLGLK--VVNAADEFLDALEGESDPEKKRKIVGERFIR--VFEREAT 115

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E           +    + G+  T+ +     +  P     ++
Sbjct: 116 ATGAQYLLQGTIYPDCIE------SEGGIKSHHNVGGLPLTMQFQG---VIEPLRDLYKD 166

Query: 176 DIRSFLLQRNIS 187
           ++R       + 
Sbjct: 167 EVREVAEALGLP 178


>gi|329954242|ref|ZP_08295336.1| phosphoadenosine phosphosulfate reductase family protein
          [Bacteroides clarus YIT 12056]
 gi|328527948|gb|EGF54934.1| phosphoadenosine phosphosulfate reductase family protein
          [Bacteroides clarus YIT 12056]
          Length = 368

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 7  ESVRFFVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF 53
          E+ +  +R L      + V  SGG DS  LL     V  +    K+  
Sbjct: 11 EAAKERIRQLFSIGGRLGVCFSGGKDSTALLHITLEVARELGIRKLPV 58


>gi|323704672|ref|ZP_08116250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536134|gb|EGB25907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 369

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS    + L     D     +K           E        A ++   V
Sbjct: 9   KVVVGMSGGVDSSVSALLLKEQGYDVIGIFMK--------NWDEEDDSGYCTAAEDYEDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             VC ++ I +  +++                 + R          E ++    E +  I
Sbjct: 61  VRVCDKIGIPYYSINFTKEYWDRVFQYFLNEYKSGRTPNPDVMCNKEIKFKAFLEFSMKI 120

Query: 118 NATLIMTAHTFDDQLETV-----YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  I T H    ++E +      ++      ++   L  +    L         P    
Sbjct: 121 GADYIATGHYA--RIEHIDGHYKMLKGVDKNKDQTYFLCELGQKQLSKTMF----PIGHL 174

Query: 173 RREDIRSFLLQRNIS 187
            + ++R    +  + 
Sbjct: 175 DKSEVREIARKAGLK 189


>gi|291459813|ref|ZP_06599203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417603|gb|EFE91322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 363

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 35/131 (26%)

Query: 23  LVAVSGGSDSMGLLIALHS-----------VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           LVA+SGG DS      +             +      G  +  +            ++  
Sbjct: 6   LVAMSGGVDSSVAAALMKERGYDCIGVTMKLYEKEGGGTCRVGSCC--------TAEDAE 57

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAK 115
                 S L I + V ++     +  +   A                R  ++  + + A+
Sbjct: 58  DARQAASVLGIPYYVFNFTGDFEREVIRRFAETYLKGGTPNPCIDCNRYMKHRRLYQRAR 117

Query: 116 TINATLIMTAH 126
            +    I T H
Sbjct: 118 ELGFDSIATGH 128


>gi|148238384|ref|YP_001223771.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 7803]
 gi|147846923|emb|CAK22474.1| GMP synthase (glutamine-hydrolyzing) [Synechococcus sp. WH 7803]
          Length = 539

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           E+V+  VRS V    +L+A+SGG DS  L   L   + D+
Sbjct: 224 EAVKQ-VRSQVGDKRVLLALSGGVDSSTLAFLLKKAIGDQ 262


>gi|222055275|ref|YP_002537637.1| GMP synthase, large subunit [Geobacter sp. FRC-32]
 gi|254800100|sp|B9M9G4|GUAA_GEOSF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|221564564|gb|ACM20536.1| GMP synthase, large subunit [Geobacter sp. FRC-32]
          Length = 520

 Score = 45.3 bits (106), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 25/195 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     ++  V    +++ +SGG DS      +H  + +      + + + VD+  LR 
Sbjct: 209 IEDAVARIKQQVGSDRVILGLSGGVDSSVAAALIHRAIGE------QLTCVFVDNGLLRL 262

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------REARYALISEHAKTI- 117
              D+V   +     L +   V+           +A        R+    L  E  +   
Sbjct: 263 GEGDQVM--ATFAQNLGVK--VIRVDAEDRFLSALAGVSDPEKKRKIIGGLFVEIFEEES 318

Query: 118 ----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
               +A  +     + D +E+      +      +        +   + L +  P     
Sbjct: 319 NKITDARWLAQGTIYPDVIES---AGAKTGKAHNIKSHHNVGGLPEHMKLKLLEPLRELF 375

Query: 174 REDIRSFLLQRNISW 188
           ++++R+   +  +  
Sbjct: 376 KDEVRAIGEELGLPH 390


>gi|254303789|ref|ZP_04971147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323981|gb|EDK89231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 362

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 51/183 (27%), Gaps = 35/183 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25  RIGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81  RIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLIMT 124
            I H V+  ++   +                       R  ++  + +   +  A  + T
Sbjct: 73  GIEHYVLDVRDEFKEKVMDYFVDEYMNGRTPNPCMVCNRHIKFGKMLDFILSKGANFMAT 132

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H       T          +            I  D    I  P     +  +R F  Q
Sbjct: 133 GHY------TKLKNGLLSVGDDSNKDQVYFLSQIEKDRLSKIIFPVGDLEKPKLREFAQQ 186

Query: 184 RNI 186
             +
Sbjct: 187 MGV 189


>gi|222529622|ref|YP_002573504.1| PP family ATPase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456469|gb|ACM60731.1| PP family ATPase [Caldicellulosiruptor bescii DSM 6725]
          Length = 267

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 59/190 (31%), Gaps = 34/190 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E ++  ++       +LVA SGG DS  LL     VL +++      S       L 
Sbjct: 8   EKLERLKEIIKDY---ESVLVAFSGGVDSTFLLKVSFDVLGEKAIAVFSSSV------LS 58

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKTI 117
              + E    + +   +     V+       +  +        Y        +    + +
Sbjct: 59  PQREKEDA--AKLAKDIGARLIVIERDVFSNEDFMKNDRLRCYYCKKDLIKRLKVLKEEL 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   I+     DD      ++  R    K +   G+   ++               +E+I
Sbjct: 117 NLNEIVEGSNIDD------LQDFR-PGRKALEEEGIKSPLVE----------TGLTKEEI 159

Query: 178 RSFLLQRNIS 187
           R    +  IS
Sbjct: 160 RYLSKEFGIS 169


>gi|187779779|ref|ZP_02996252.1| hypothetical protein CLOSPO_03375 [Clostridium sporogenes ATCC
          15579]
 gi|187773404|gb|EDU37206.1| hypothetical protein CLOSPO_03375 [Clostridium sporogenes ATCC
          15579]
          Length = 219

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          I+V  SGG DS   L  A             +  A+S D    H L      E+ +  D+
Sbjct: 7  IVV-FSGGQDSTTCLFWAKKKYK--------EVIAVSFDYNQKHKL------ELEFAKDI 51

Query: 77 CSRLRIAHSVVS 88
          C +  I H ++ 
Sbjct: 52 CKKHNIEHKILD 63


>gi|182414771|ref|YP_001819837.1| asparagine synthase [Opitutus terrae PB90-1]
 gi|177841985|gb|ACB76237.1| asparagine synthase [Opitutus terrae PB90-1]
          Length = 439

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           + V  ++RS+     I V  SGG DS  + + ++ V+        +  A ++D       
Sbjct: 157 DEVAKWLRSMPEHEPIGVCFSGGVDSGAVFVTVYEVMRKLGMNPARLKAFTLDFGDGP-- 214

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR 103
             +VR   +   RL +   + + +       +    R
Sbjct: 215 --DVRQAREFLERLGLGLFLETIEADPASLNVADTLR 249


>gi|94311890|ref|YP_585100.1| tRNA-specific 2-thiouridylase MnmA [Cupriavidus metallidurans CH34]
 gi|205816893|sp|Q1LJ45|MNMA_RALME RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|93355742|gb|ABF09831.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cupriavidus metallidurans CH34]
          Length = 359

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 54/201 (26%), Gaps = 47/201 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     +     +K               D+  Y     
Sbjct: 2   SGKRVVVGLSGGVDSSVTAWLLKQQGYEVIGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
                + V   + +    V++                 A R          E ++    +
Sbjct: 52  DWLDVASVADVIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAH------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           HA ++ A  I T H        + + E   +++     ++   L  +    L        
Sbjct: 112 HAMSLGANTIATGHYARVRQAANGKFE--LLKAFDHTKDQSYFLHRLNQAQLSRT----L 165

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     +  +R    +  + 
Sbjct: 166 FPLGEIPKTRVREIAAEIGLP 186


>gi|327460370|gb|EGF06707.1| GMP synthase [Streptococcus sanguinis SK1057]
          Length = 520

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 40/193 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE------ 69
           V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+      
Sbjct: 223 VGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVMDMLG 276

Query: 70  ---------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
                             +L           S P+        E  Y    E +K  +  
Sbjct: 277 GKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKLKDVK 328

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E            + +        +  D+   +  P     ++++R+ 
Sbjct: 329 FLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRAL 382

Query: 181 LLQRN----ISWC 189
             +      I W 
Sbjct: 383 GTELGMPDEIVWR 395


>gi|325696489|gb|EGD38379.1| GMP synthase [Streptococcus sanguinis SK160]
 gi|327462221|gb|EGF08548.1| GMP synthase [Streptococcus sanguinis SK1]
          Length = 520

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 40/193 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE------ 69
           V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+      
Sbjct: 223 VGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVMDMLG 276

Query: 70  ---------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
                             +L           S P+        E  Y    E +K  +  
Sbjct: 277 GKFGLNIIKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKLKDVK 328

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E            + +        +  D+   +  P     ++++R+ 
Sbjct: 329 FLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRAL 382

Query: 181 LLQRN----ISWC 189
             +      I W 
Sbjct: 383 GTELGMPDEIVWR 395


>gi|325694516|gb|EGD36425.1| GMP synthase [Streptococcus sanguinis SK150]
          Length = 520

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 40/193 (20%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE------ 69
           V    +L+ +SGG DS  + + L   + D      +   I VDH  LR+   D+      
Sbjct: 223 VGDKKVLLGLSGGVDSSVVGVLLQKAIGD------QLICIFVDHGLLRKGEADQVMDMLG 276

Query: 70  ---------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
                             +L           S P+        E  Y    E +K  +  
Sbjct: 277 GKFGLNIVKADAAKRFLDKL--------AGVSDPEQKRKIIGNEFVYVFDDEASKLKDVK 328

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E            + +        +  D+   +  P     ++++R+ 
Sbjct: 329 FLAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMQFELIEPLNTLYKDEVRAL 382

Query: 181 LLQRN----ISWC 189
             +      I W 
Sbjct: 383 GTELGMPDEIVWR 395


>gi|315920804|ref|ZP_07917044.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694679|gb|EFS31514.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 384

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 83/242 (34%), Gaps = 46/242 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS     A+  + +      + F    ++      + + +    ++  R
Sbjct: 5   KRVLLGMSGGTDSSV--AAMRLLEAGYEVIGVTFRFYELN-----GSTEYLEDARNLAER 57

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIM 123
           L I H     +    +  +        A R            ++ L+++ A  +    I 
Sbjct: 58  LGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGIFYIA 117

Query: 124 TAH-TFDDQL-ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T H   + QL  T Y+    D  +     L G+   IL  +      P     + + R +
Sbjct: 118 TGHYAQNIQLNNTFYITYAADSDKDQTFFLWGLKQDILCRM----LLPMGDITKVEARVW 173

Query: 181 LLQRN----------ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             +            I  C  P      + R  +R ++   +  AL  + +  ++ +V V
Sbjct: 174 AAEHGFRKVATKKDSIGVCFCP----MDY-RTFLRNWLAQ-NSAALAGEEQMMEEDQVLV 227

Query: 231 NN 232
            +
Sbjct: 228 ED 229


>gi|310816163|ref|YP_003964127.1| GMP synthase [Ketogulonicigenium vulgare Y25]
 gi|308754898|gb|ADO42827.1| GMP synthase [Ketogulonicigenium vulgare Y25]
          Length = 518

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 70/187 (37%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS    I ++  + D      + + + VDH  LR   KDE  
Sbjct: 214 IRDQVGDKQVICALSGGVDSSVTAILINEAIGD------QLTCVFVDHGLLR---KDEAI 264

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE---ARY-------ALISEHAKTI-NAT 120
            V+ +        ++++   S+   G +    +    R         +  ++AK I  A 
Sbjct: 265 EVTRMFRE-NYNLNLIAADESEMFLGALEGVTDPEVKRKTIGKLFIDVFDKYAKEIDGAE 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+V   S        +        +   + L +  P     ++++R+ 
Sbjct: 324 FLAQGTLYPDVIESV---SFSGGPSVTIKSHHNVGGLPEKMGLKLVEPLRELFKDEVRAL 380

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 381 GRELGLP 387


>gi|307298729|ref|ZP_07578532.1| phosphoadenosine phosphosulfate reductase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915894|gb|EFN46278.1| phosphoadenosine phosphosulfate reductase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 338

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 54/179 (30%), Gaps = 35/179 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVDHCLRETA-KDEV 70
           ++ L     + VA SGG DS  +    LH++  DR    +K     ++ C    +    +
Sbjct: 27  IKELAGKDRLTVAFSGGLDSTLVAYLALHALGRDR----VKL----INVCFGPYSYSRGL 78

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--REARYALISEHAKTINATLIMTAHTF 128
             V+ +  RL +         ++        +  R  R A +      +   L+ T    
Sbjct: 79  EIVASLAERLDLRLEFTPGYEAQENVWKRGPSCNRCTRLAKLPAVRSGV-LGLVATGANQ 137

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            D                     G    ++ D       P     + +I   L   NI 
Sbjct: 138 SD-------------------TWGKTGIVIKDG---FYAPLRNWTKAEIEEALSYLNIE 174


>gi|255524816|ref|ZP_05391766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
 gi|296188647|ref|ZP_06857035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
 gi|255511483|gb|EET87773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
 gi|296046911|gb|EFG86357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium carboxidivorans P7]
          Length = 358

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 35/134 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--------- 70
             +++ +SGG DS      L     D     ++          +E  + E          
Sbjct: 3   KKVVIGMSGGVDSSVAAYLLKQQGYDVIGVTMQV--------WQEDEEYEAVEGGCCSLS 54

Query: 71  --RYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAAREA-RYALISE 112
                  V  +L I   V+++K+                        A  +  ++  + +
Sbjct: 55  AVEDARRVAYKLDIPFYVMNFKDIFKKNVIDYFIDEYMQGRTPNPCVACNKFIKFDALLK 114

Query: 113 HAKTINATLIMTAH 126
            A  + A  + T H
Sbjct: 115 KAMELGADYVATGH 128


>gi|253995996|ref|YP_003048060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera mobilis JLW8]
 gi|253982675|gb|ACT47533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylotenera mobilis JLW8]
          Length = 369

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 57/206 (27%), Gaps = 55/206 (26%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
                I+V +SGG DS    + L     + +   +K               D   Y S  
Sbjct: 6   AQKKKIVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNW----------EDDDTDEYCSSK 55

Query: 75  -------DVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALIS 111
                   V  ++ I    V++                 A R          E ++    
Sbjct: 56  QDLIDAVSVADKIGIDIEAVNFSKEYKDRVFANFLSEYQAGRTPNPDILCNAEIKFKAFL 115

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---- 167
           +HA  + A LI T H           + + +  + G       D    D + ++ R    
Sbjct: 116 DHAMGMGADLIATGHYA---------QVRENPLQPGKFQLLKADDGSKDQSYFLYRLNQA 166

Query: 168 -------PFLRCRREDIRSFLLQRNI 186
                  P  +  + ++R       +
Sbjct: 167 QLSKTLFPLGQHLKREVREIARSAGL 192


>gi|269120170|ref|YP_003308347.1| GMP synthase, large subunit [Sebaldella termitidis ATCC 33386]
 gi|268614048|gb|ACZ08416.1| GMP synthase, large subunit [Sebaldella termitidis ATCC 33386]
          Length = 512

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 24/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++ +V    +++ +SGG DS    + +++ +        + + I VD   L
Sbjct: 200 SFIEEETEKIKQIVKDDKVILGLSGGVDSSVAAVLINNAIGK------QLTCIFVDTGLL 253

Query: 63  RETAKDEVRYVSDVCSR---LRIAHSVVS---WKNSKPQTGLMAAAREARYALI----SE 112
           R   KDE + V +       L I         ++  K         +   +  I     E
Sbjct: 254 R---KDEAKKVLEYYKEHFDLDIKFVDAKNRFFEKLKGADEPEQKRKIIGHEFIEIFNEE 310

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K   A  +     + D +E+  ++      +    + G+ + + ++    +  P    
Sbjct: 311 TYKLKGAKFLAQGTIYPDVIESQSIKGPSHTIKSHHNVGGLPEDLAFE----LLEPLKEL 366

Query: 173 RREDIRSFLLQRNISWC 189
            ++++R    +  +   
Sbjct: 367 FKDEVRKVGAELGLPHF 383


>gi|193075062|gb|ACF08533.1| GuaA [Pseudomonas aeruginosa]
          Length = 281

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V  + +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 73  VRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 126

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
             +     + +   V+         G +A             R        E  K  +  
Sbjct: 127 --AMFAENMGVK--VIRANVEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATKLQDVK 182

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  D+   +  P     ++++R  
Sbjct: 183 FLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRKI 239

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 240 GLELGLPY 247


>gi|283786121|ref|YP_003365986.1| GMP synthase [glutamine-hydrolyzing] [Citrobacter rodentium ICC168]
 gi|282949575|emb|CBG89193.1| GMP synthase [glutamine-hydrolyzing] [Citrobacter rodentium ICC168]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 221 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 271

Query: 72  YVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTINATL 121
            V D+           +          K +    A      R        E  K  +   
Sbjct: 272 QVMDMFGDHFGLNIVHVPAEERFLAALKGENDPEAKRKIIGRVFVEVFDEEALKLEDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|172060937|ref|YP_001808589.1| GMP synthase [Burkholderia ambifaria MC40-6]
 gi|226738397|sp|B1YS44|GUAA_BURA4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|171993454|gb|ACB64373.1| GMP synthase, large subunit [Burkholderia ambifaria MC40-6]
          Length = 539

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 25/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  L
Sbjct: 207 NHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLL 260

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG-------LMAAA----REARYALIS 111
           R     E + V D+    R+   VV    S+   G         A      RE      +
Sbjct: 261 RLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLTGVTDPEAKRKIIGREFVEVFQA 316

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  K   A  +     + D +E+      +      +        +   L L +  P   
Sbjct: 317 EAKKLSKAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEPLRD 373

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R   +   +  
Sbjct: 374 LFKDEVRELGVALGLPP 390


>gi|28868657|ref|NP_791276.1| GMP synthase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|38257474|sp|Q886X5|GUAA_PSESM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|28851896|gb|AAO54971.1| GMP synthase [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331019365|gb|EGH99421.1| GMP synthase [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V    +L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDSVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINA 119
            V +     + +   V+     +           P+       R       +E  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLEGESDPEKKRKIIGRTFIDVFDAESCKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|317968376|ref|ZP_07969766.1| GMP synthase [Synechococcus sp. CB0205]
          Length = 531

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           VR  V    +L+A+SGG DS  L   LH  + D+
Sbjct: 221 VRRQVGDKRVLLALSGGVDSSTLAFLLHKAIGDQ 254


>gi|282898163|ref|ZP_06306154.1| conserved hypothetical protein [Raphidiopsis brookii D9]
 gi|281196694|gb|EFA71599.1| conserved hypothetical protein [Raphidiopsis brookii D9]
          Length = 263

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 54/180 (30%), Gaps = 37/180 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCS 78
            H L+A SGG DS  +    H VL DR+   +  +A+        +   +E+   S   +
Sbjct: 2   GHALIAYSGGVDSTLVAKVAHDVLGDRA---VAVTAV------SPSLLPEELTEASAQAA 52

Query: 79  RLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            + I H +V  +       +          +   +  +   A     + ++     DD  
Sbjct: 53  TIGITHKIVHTQEMANPNYTSNPVNRCYFCKSELHDTLKPLALEWGYSYVIDGVNADD-- 110

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCE 190
                            L      I          P   +   + ++R    Q  + W +
Sbjct: 111 -----------------LKDYRPGIQAAKERGARSPLAEIGITKMEVRQLSQQLALPWWD 153


>gi|297619529|ref|YP_003707634.1| cell cycle control-like ATPase [Methanococcus voltae A3]
 gi|297378506|gb|ADI36661.1| ATPase of the PP-loop superfamily protein implicated in cell cycle
           control-like protein [Methanococcus voltae A3]
          Length = 323

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 15/111 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++  SGG DS+  L  L + L  +         I+VD+     A++ +    ++    ++
Sbjct: 106 ILGFSGGKDSVVALYLLINDLKMKPL------CITVDNGY--MAEESMENCKNIAKYFKV 157

Query: 83  AHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              V++   +K                 +     +   A+  N   I+T H
Sbjct: 158 DWIVLNRDYTKFFNKMISRGESPCRICSDMNMHELWHFARQTNIDTIVTGH 208


>gi|148655490|ref|YP_001275695.1| ExsB family protein [Roseiflexus sp. RS-1]
 gi|148567600|gb|ABQ89745.1| ExsB family protein [Roseiflexus sp. RS-1]
          Length = 285

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 54/181 (29%), Gaps = 39/181 (21%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVCS 78
           L+A SGG DS  LL   H  L DR+       A +        +    ++E+     + +
Sbjct: 30  LIAFSGGVDSTLLLKVAHDTLGDRAI------AAT------ADSETYPREELEQACALAA 77

Query: 79  RLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +   H VV          ++         +   +  +   A  +    I+     DD  
Sbjct: 78  LIGCRHIVVRTDELSDERYARNHPDRCYYCKRTLFTHLQPLAAELGVAAILYGAMADD-- 135

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
                         G    G+   + + +   +        + +IR    +  +     P
Sbjct: 136 -------------IGDHRPGLRAAVEFAVRSPLIE--AGLGKREIRELARRLGLPNWNKP 180

Query: 193 S 193
           S
Sbjct: 181 S 181


>gi|329769467|ref|ZP_08260878.1| GMP synthase [Gemella sanguinis M325]
 gi|328838798|gb|EGF88394.1| GMP synthase [Gemella sanguinis M325]
          Length = 514

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 24/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV- 70
           +R+ V    +L A+SGG DS  +   L   + D      +   + +DH L R+   + V 
Sbjct: 209 IRAEVGNQKVLCALSGGVDSSVVAALLDKAIGD------QLICMFIDHGLLRKGEAEGVM 262

Query: 71  -RYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINAT 120
             +  ++     +    +  K          S P+        E  Y    E AK  +  
Sbjct: 263 NTFSKEIEGGFNMNLIKIDAKERFLGKLKGVSDPEKKRKIIGNEFVYVFDEECAKLHDVP 322

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E            + +        +  D+   +  P     ++++R+ 
Sbjct: 323 FLAQGTLYTDVIE------SGTKNAQTIKSHHNVGGLPEDMRFSLIEPLNTLFKDEVRAL 376

Query: 181 LLQRNIS 187
                + 
Sbjct: 377 GEALGLP 383


>gi|309799283|ref|ZP_07693531.1| tRNA(Ile)-lysidine synthase [Streptococcus infantis SK1302]
 gi|308117128|gb|EFO54556.1| tRNA(Ile)-lysidine synthase [Streptococcus infantis SK1302]
          Length = 51

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSF 48
           + +++A+SGG DSM L   L +   +   
Sbjct: 19 HSRVVLALSGGLDSMFLFHLLSTYQEELGI 48


>gi|254383092|ref|ZP_04998446.1| GMP synthase [Streptomyces sp. Mg1]
 gi|194341991|gb|EDX22957.1| GMP synthase [Streptomyces sp. Mg1]
          Length = 545

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 67/199 (33%), Gaps = 28/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + +E     +R  V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 211 NIVEEQIAAIREQVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 264

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL---- 109
           R+   ++V    D  +   +   VV  +          S P+T      RE         
Sbjct: 265 RKGETEQVE--KDFVAATGVQLKVVDAQERFLNALAGVSDPETKRKIIGREFIRVFEQAQ 322

Query: 110 ISEHAKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +    +   A   +   T   D +E+             +        +  D+   +  P
Sbjct: 323 LEILQEDGPAVAFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDIEFELVEP 377

Query: 169 FLRCRREDIRSFLLQRNIS 187
             +  ++++R    +  + 
Sbjct: 378 LRQLFKDEVRMVGQELGLP 396


>gi|116334330|ref|YP_795857.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lactobacillus brevis ATCC 367]
 gi|116099677|gb|ABJ64826.1| GMP synthase (glutamine-hydrolyzing) [Lactobacillus brevis ATCC
           367]
          Length = 521

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 65/192 (33%), Gaps = 30/192 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  + + LH  +        + ++I VDH  LR+    E +
Sbjct: 220 IRETVGDKKVLLGLSGGVDSSVVGVLLHKAI------GSQLTSIFVDHGLLRKG---EAK 270

Query: 72  YVSDVCS-RLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKTI-NATL 121
            V D    +  +    V+ ++            E +          + ++ A+ +     
Sbjct: 271 QVMDSLEGKFGLNIVQVNAQDRFLSKLAGVTEPEKKRKIIGNEFIQVFNDEAQKLDGIDF 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E            + +        +  D++  +  P     +++ R   
Sbjct: 331 LAQGTLYTDVIE------SGTDTAQTIKSHHNVGGLPEDMHFQLIEPLRSLFKDEARELG 384

Query: 182 LQRN----ISWC 189
            +      + W 
Sbjct: 385 EKLGMPSELVWR 396


>gi|301154862|emb|CBW14325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parainfluenzae T3T1]
          Length = 382

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 53/198 (26%), Gaps = 47/198 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 24  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 73

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 74  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 133

Query: 114 AKTINATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H       D+Q E   +R      ++   L  +    +         P
Sbjct: 134 AEDLGANYIATGHYVRRRGADNQAE--LLRGLDSNKDQSYFLYTLSKHQV----GQSLFP 187

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R+      +
Sbjct: 188 VGEIEKPIVRAIAEDLGL 205


>gi|242240146|ref|YP_002988327.1| GMP synthase, large subunit [Dickeya dadantii Ech703]
 gi|242132203|gb|ACS86505.1| GMP synthase, large subunit [Dickeya dadantii Ech703]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  + DR       + + VD+  LR     E  
Sbjct: 221 IREQVGADKVILGLSGGVDSSVTALLLHRAIGDR------LTCVFVDNGLLRLN---EAE 271

Query: 72  YVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V +    +  +    V  +          + P+       R        E  K  +   
Sbjct: 272 QVMEMFGDQFGLNIVHVPAEERFLSALAGIADPEAKRKTIGRVFVDVFDEEAGKLTDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  D+ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPDDMALGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|239979964|ref|ZP_04702488.1| GMP synthase [Streptomyces albus J1074]
          Length = 542

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 21/188 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R+ V     +  +SGG DS  +  AL            + + + VDH L R+   ++V 
Sbjct: 231 IRARVGTKRAICGLSGGVDS-AVAAALVQ-----KAIGTQLTCVYVDHGLMRKGETEQVE 284

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM-TAHTF 128
             +V+    +L++  +   +  +          R+          +   A ++   A   
Sbjct: 285 KDFVAATGVQLKVVDAEERFLTALAGVSDPEQKRKIIGREFIRVFEQAQAEIVAEAAGEG 344

Query: 129 DDQLETVYMRSQ---------RDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           +D      ++                  +        +  D+   +  P     ++++R 
Sbjct: 345 EDVA--FLVQGTLYPDVVESGGGTGTANIKSHHNVGGLPDDIEFELVEPLRMLFKDEVRM 402

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 403 VGQELGLP 410


>gi|55820926|ref|YP_139368.1| GMP synthase [Streptococcus thermophilus LMG 18311]
 gi|81560671|sp|Q5M4P4|GUAA_STRT2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|55736911|gb|AAV60553.1| GMP synthase [Streptococcus thermophilus LMG 18311]
          Length = 527

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH L
Sbjct: 226 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGL 269


>gi|55822848|ref|YP_141289.1| GMP synthase [Streptococcus thermophilus CNRZ1066]
 gi|81559474|sp|Q5M029|GUAA_STRT1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|55738833|gb|AAV62474.1| GMP synthase [Streptococcus thermophilus CNRZ1066]
          Length = 527

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS  + + L   + D      + + I VDH L
Sbjct: 226 IRETVGDRKVLLGLSGGVDSSVVGVLLQKAIGD------QLTCIFVDHGL 269


>gi|28211134|ref|NP_782078.1| tRNA-specific 2-thiouridylase MnmA [Clostridium tetani E88]
 gi|75542384|sp|Q894S7|MNMA2_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|28203574|gb|AAO36015.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Clostridium tetani E88]
          Length = 358

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 72/240 (30%), Gaps = 59/240 (24%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLS-----------------DRSFGKIKFSAISVD 59
           +    +LV +SGG DS      L                      +R  G    SA+   
Sbjct: 3   ILKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQDDKEFIEREGGCCSLSAV--- 59

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE 104
                    + R V++   ++ I   V+++K++  +                    A  +
Sbjct: 60  --------ADARRVAN---KIGIPFYVMNFKDAFKKNVIDYFVDEYMEGRTPNPCVACNK 108

Query: 105 A-RYALISEHAKTINATLIMTAHTFDDQLETVYMR-SQRDYAEKGMGLSGMCDTILYDLN 162
             +++   + A T+    + T H     +E    R   R   +     +     +     
Sbjct: 109 FIKFSSFLDKAMTLGIDYVATGHYA--IIEKQNNRYIVRKSEDDKKDQTYALYNLTQFQL 166

Query: 163 LWISRPFLRCRREDIRSFLLQRNISWC--ED-------PSNTDDRFERVRVRRFVRDIDL 213
                P  R ++ +IR    +  +     +D       P N   ++ + R    VR  + 
Sbjct: 167 ERTLMPCGRYKKSEIREIAKKIGLRVHNKKDSQEICFIPDNDHGKYIKNRFPSKVRQGNF 226


>gi|83951896|ref|ZP_00960628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius nubinhibens ISM]
 gi|83836902|gb|EAP76199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius nubinhibens ISM]
          Length = 380

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 52/221 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 16  PSETRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLY----DHG--AALAKKGACCAGI 69

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V   +   H V+ ++N      +   A                   ++  + +
Sbjct: 70  DIHDARRVAEEMGFPHYVLDYENIFQDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLQ 129

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            A+ ++A  + T H             QR   + G  L    D          +   +  
Sbjct: 130 TARDLDADCMATGH-----------YIQRKQGQNGPELHCATDANRDQSYFLFSTTPEQL 178

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P      ++  R    +  +S  + P + D  F   
Sbjct: 179 EFLRFPLGHLPSKDATRELAAKYGLSVADKPDSQDICFVPN 219


>gi|331699094|ref|YP_004335333.1| GMP synthase [Pseudonocardia dioxanivorans CB1190]
 gi|326953783|gb|AEA27480.1| GMP synthase (glutamine-hydrolyzing) [Pseudonocardia dioxanivorans
           CB1190]
          Length = 526

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 9/81 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+     +R+ V   H +  +SGG DS     A+ + L  R+ G  + + + VDH  L
Sbjct: 211 SIIDDSVAAIRAQVGDGHAVCGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLL 264

Query: 63  RETAKDEVR--YVSDVCSRLR 81
           R   +++V   +V+   ++L 
Sbjct: 265 RAGEREQVERDFVAATGAKLH 285


>gi|292656744|ref|YP_003536641.1| GMP synthase (glutamine-hydrolyzing) subunit B [Haloferax volcanii
           DS2]
 gi|291371351|gb|ADE03578.1| GMP synthase (glutamine-hydrolyzing) subunit B [Haloferax volcanii
           DS2]
          Length = 305

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 30/194 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE     +R  +   H ++A+SGG DS       +  + +      + + + VD  L 
Sbjct: 6   EFIEDATASIRDQIGDEHAIIALSGGVDSSVAATLAYEAVGE------QLTPVYVDTGLM 59

Query: 63  RETAKDEVRYVSDVCSRLRI---------AHSVVSWKNSKPQTGLMAAAREARYALISEH 113
           R+   +++         LR+         A   V     K +       RE         
Sbjct: 60  RKGETEQIADTFSFMESLRVVDARDRFFDALEGVVDPEEKRKVIGEQFIRE-----FERE 114

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK  +A  ++    + D++E           +    + G+ D + ++    I  P     
Sbjct: 115 AKETDAQYLVQGTIYPDRIE------SEGNIKSHHNVGGLPDVVDFEG---IVEPVRDLY 165

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 166 KDEVREVARALGLE 179


>gi|193075014|gb|ACF08509.1| GuaA [Pseudomonas aeruginosa]
 gi|193075016|gb|ACF08510.1| GuaA [Pseudomonas aeruginosa]
 gi|193075018|gb|ACF08511.1| GuaA [Pseudomonas aeruginosa]
 gi|193075020|gb|ACF08512.1| GuaA [Pseudomonas aeruginosa]
 gi|193075022|gb|ACF08513.1| GuaA [Pseudomonas aeruginosa]
 gi|193075026|gb|ACF08515.1| GuaA [Pseudomonas aeruginosa]
 gi|193075028|gb|ACF08516.1| GuaA [Pseudomonas aeruginosa]
 gi|193075030|gb|ACF08517.1| GuaA [Pseudomonas aeruginosa]
 gi|193075032|gb|ACF08518.1| GuaA [Pseudomonas aeruginosa]
 gi|193075034|gb|ACF08519.1| GuaA [Pseudomonas aeruginosa]
 gi|193075036|gb|ACF08520.1| GuaA [Pseudomonas aeruginosa]
 gi|193075038|gb|ACF08521.1| GuaA [Pseudomonas aeruginosa]
 gi|193075040|gb|ACF08522.1| GuaA [Pseudomonas aeruginosa]
 gi|193075042|gb|ACF08523.1| GuaA [Pseudomonas aeruginosa]
 gi|193075044|gb|ACF08524.1| GuaA [Pseudomonas aeruginosa]
 gi|193075046|gb|ACF08525.1| GuaA [Pseudomonas aeruginosa]
 gi|193075048|gb|ACF08526.1| GuaA [Pseudomonas aeruginosa]
 gi|193075050|gb|ACF08527.1| GuaA [Pseudomonas aeruginosa]
 gi|193075052|gb|ACF08528.1| GuaA [Pseudomonas aeruginosa]
 gi|193075054|gb|ACF08529.1| GuaA [Pseudomonas aeruginosa]
 gi|193075056|gb|ACF08530.1| GuaA [Pseudomonas aeruginosa]
 gi|193075058|gb|ACF08531.1| GuaA [Pseudomonas aeruginosa]
 gi|193075060|gb|ACF08532.1| GuaA [Pseudomonas aeruginosa]
 gi|193075064|gb|ACF08534.1| GuaA [Pseudomonas aeruginosa]
 gi|193075066|gb|ACF08535.1| GuaA [Pseudomonas aeruginosa]
 gi|193075068|gb|ACF08536.1| GuaA [Pseudomonas aeruginosa]
 gi|193075072|gb|ACF08538.1| GuaA [Pseudomonas aeruginosa]
 gi|193075074|gb|ACF08539.1| GuaA [Pseudomonas aeruginosa]
 gi|193075076|gb|ACF08540.1| GuaA [Pseudomonas aeruginosa]
 gi|193075078|gb|ACF08541.1| GuaA [Pseudomonas aeruginosa]
 gi|193075080|gb|ACF08542.1| GuaA [Pseudomonas aeruginosa]
          Length = 281

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V  + +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 73  VRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 126

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
             +     + +   V+         G +A             R        E  K  +  
Sbjct: 127 --AMFAENMGVK--VIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATKLQDVK 182

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  D+   +  P     ++++R  
Sbjct: 183 FLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRKI 239

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 240 GLELGLPY 247


>gi|171321379|ref|ZP_02910333.1| GMP synthase, large subunit [Burkholderia ambifaria MEX-5]
 gi|171093337|gb|EDT38531.1| GMP synthase, large subunit [Burkholderia ambifaria MEX-5]
          Length = 539

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 25/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH  L
Sbjct: 207 NHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLL 260

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG-------LMAAA----REARYALIS 111
           R     E + V D+    R+   VV    S+   G         A      RE      +
Sbjct: 261 RLN---EGKMVLDMFEG-RLHAKVVHVDASEQFLGHLTGVTDPEAKRKIIGREFVEVFQA 316

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  K   A  +     + D +E+      +      +        +   L L +  P   
Sbjct: 317 EAKKLSKAKWLAQGTIYPDVVES---GGTKTKKATTIKSHHNVGGLPETLGLKLLEPLRD 373

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R   +   +  
Sbjct: 374 LFKDEVRELGVALGLPP 390


>gi|119484405|ref|ZP_01619022.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lyngbya sp. PCC 8106]
 gi|119457879|gb|EAW39002.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Lyngbya sp. PCC 8106]
          Length = 539

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD 45
           E++R  VR+ V    +L+A+SGG DS  L   +H  + D
Sbjct: 224 EAIRE-VRAKVGDKRVLLALSGGVDSSTLAFLMHRAIGD 261


>gi|127512990|ref|YP_001094187.1| exsB protein [Shewanella loihica PV-4]
 gi|167016453|sp|A3QEN0|QUEC_SHELP RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|126638285|gb|ABO23928.1| exsB protein [Shewanella loihica PV-4]
          Length = 227

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL+           +  A++ D+  R +  +E+   + +   L
Sbjct: 5   VVV-FSGGQDSTTCLIQALNQYD--------EVHAVTFDYGQRHS--EEIATAAKLAKDL 53

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA 105
           ++    +       +  + A  R+A
Sbjct: 54  KVDSHKILDVTVLNELAISALTRDA 78


>gi|332296116|ref|YP_004438039.1| GMP synthase (glutamine-hydrolyzing) [Thermodesulfobium narugense
           DSM 14796]
 gi|332179219|gb|AEE14908.1| GMP synthase (glutamine-hydrolyzing) [Thermodesulfobium narugense
           DSM 14796]
          Length = 515

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 60/183 (32%), Gaps = 17/183 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++ +V     + A+SGG DS    + +H  + D        +   VD  L R+    +++
Sbjct: 211 IKEMVGDQKAICALSGGVDSSAAAVLVHKAIGD------NLTCFYVDTGLMRKNENRDIK 264

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAKTINATLIMT 124
            + D    L +       +      G+    R+ +                  +   ++ 
Sbjct: 265 RIFDEEFHLNVKFIDARERFLSKLEGVSDPERKRKIIGEEFIRTFEDAIKGLGDFDWLVQ 324

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
              + D +E+             +        +  D+   +  PF    ++++R+  L+ 
Sbjct: 325 GTLYPDVIES---AVSVGGKAVRIKSHHNVAGLPEDMKFKLLEPFRNLFKDEVRNLALEL 381

Query: 185 NIS 187
            + 
Sbjct: 382 GLP 384


>gi|238751013|ref|ZP_04612509.1| Queuosine biosynthesis protein queC [Yersinia rohdei ATCC 43380]
 gi|238710703|gb|EEQ02925.1| Queuosine biosynthesis protein queC [Yersinia rohdei ATCC 43380]
          Length = 232

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   I+ D+  R +A+ EV     + ++L
Sbjct: 5  VVV-FSGGQDSTTCLIQALQQYD--------EVHCITFDYGQRHSAEIEVA--RQLATQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVKAHKVLDV 63


>gi|169630437|ref|YP_001704086.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium abscessus ATCC
           19977]
 gi|229486416|sp|B1MDW3|MNMA_MYCA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|169242404|emb|CAM63432.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium abscessus]
          Length = 356

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 40/193 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAK-----DEVRYV 73
            IL A+SGG DS      +     +     +  SA   +    LR  ++     ++    
Sbjct: 2   KILAAMSGGVDSSVAAARMVDAGHEVVGVHLALSAAPGT----LRTGSRGCCSKEDAADA 57

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
             V   L I   V  + +   +  +     A  E R             +A +++ A  +
Sbjct: 58  RRVADMLGIPFYVWDFADRFKEDVIDDFVEAYAEGRTPNPCVKCNEKIKFAALADRAVAL 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCR 173
               + T H           R Q     + +        +L  L     R    P     
Sbjct: 118 GFDAVATGHYA---------RLQDGRLRRAVDADKDQSYVLGVLTPEQLRRAMFPVGDSP 168

Query: 174 REDIRSFLLQRNI 186
           + DIR+   QR +
Sbjct: 169 KPDIRAEAEQRGL 181


>gi|311747046|ref|ZP_07720831.1| argininosuccinate synthase [Algoriphagus sp. PR1]
 gi|126578747|gb|EAZ82911.1| argininosuccinate synthase [Algoriphagus sp. PR1]
          Length = 397

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 52/192 (27%)

Query: 20  AHILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +++A SGG D+    L     +         +  A+ V+      +++E+  + +   
Sbjct: 2   KKVVLAYSGGLDTTFCALHLSKEL-------GYEVHAVLVNTG--GFSEEELTTIQNRAE 52

Query: 79  RLRIA-HSVVSWKNSKPQTGLM-----------------AAAREARYALISEHAKTINAT 120
            L IA   V+    +  Q  +                  +A R  +   ++E+AK+I A 
Sbjct: 53  NLGIASFKVLDVVETYYQEVIKFLVFGNVLKNQTYPLSVSAERILQAKSLAEYAKSIGAK 112

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRRE 175
            +  AH                    G G   +   +++     ++ I  P   L+  R+
Sbjct: 113 SV--AH-----------------GSTGAGNDQVRFDMIFQTIVPDIEIITPIRDLKLSRQ 153

Query: 176 DIRSFLLQRNIS 187
           +   +L +  +S
Sbjct: 154 EEIEYLKKHGVS 165


>gi|115352073|ref|YP_773912.1| GMP synthase [Burkholderia ambifaria AMMD]
 gi|122322865|sp|Q0BE45|GUAA_BURCM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115282061|gb|ABI87578.1| GMP synthase (glutamine-hydrolyzing) [Burkholderia ambifaria AMMD]
          Length = 539

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 207 NHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 259


>gi|269925434|ref|YP_003322057.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789094|gb|ACZ41235.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798]
          Length = 417

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M LSP+E ++     +     + +A SGG DS     AL  VL    +G  +   I+VD 
Sbjct: 1   MALSPLEKIQAV--EVPKYRKVALAYSGGLDS-----ALCLVLLREKYGAEEIIPITVDV 53

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104
                 +DEV         L +   ++  K+      L  A R 
Sbjct: 54  G---QGQDEVEQSFKKAEVLGVEPLLIDAKSEFTNEWLTKAIRA 94


>gi|158338517|ref|YP_001519694.1| hypothetical protein AM1_5419 [Acaryochloris marina MBIC11017]
 gi|158308758|gb|ABW30375.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 274

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 46/179 (25%), Gaps = 41/179 (22%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDVCSR 79
           L+A SGG DS  +      VL        K  AI+ +     +      E   V    + 
Sbjct: 21  LIAYSGGIDSTLVAKVAFDVL------GYKALAITAN---SPSLLPEDFEDAQVQ--AAD 69

Query: 80  LRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
           + I+H VV+                    +   Y  +   A       ++     DD   
Sbjct: 70  IGISHEVVATHEMDNPNYTTNPVNRCYFCKSELYDALKPLASEWGYAYVVDGVNADD--- 126

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCE 190
                           L      I          P   +   + ++R       + W +
Sbjct: 127 ----------------LQDYRPGIRAAKERGTRSPLAEVGITKLEVREISKLLGLPWWD 169


>gi|50084409|ref|YP_045919.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. ADP1]
 gi|73919892|sp|Q6FCW2|MNMA_ACIAD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|49530385|emb|CAG68097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter sp. ADP1]
          Length = 377

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 57/197 (28%), Gaps = 40/197 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTALEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V  ++ I     ++                AA R          E ++    +HA T+
Sbjct: 56  QAVADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFIDHAMTL 115

Query: 118 NATLIMTAHT-------FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H         + + E+      R           +      ++N  +  P  
Sbjct: 116 GADFIATGHYTRRGESMQNSRGESYA-PLLRGVDNNKDQSYFLHAVHGREINKTLF-PVG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    + +++
Sbjct: 174 EIEKPEVRKIAEKLDLA 190


>gi|103487513|ref|YP_617074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingopyxis alaskensis RB2256]
 gi|123379667|sp|Q1GRI1|MNMA_SPHAL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|98977590|gb|ABF53741.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sphingopyxis alaskensis RB2256]
          Length = 382

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 26/131 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEVR 71
               I+VA+SGG DS  +        ++     ++      DH     R     A  ++R
Sbjct: 27  KDRRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLY----DHGAKAKRVGACCAGQDIR 82

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISEHAK 115
               V  RL   H V   ++    T +   A E                     + + A+
Sbjct: 83  DARAVADRLGFVHHVHDHESRFRDTVIDQFADEYLAGRTPIPCVRCNMGVKFTDLFQLAR 142

Query: 116 TINATLIMTAH 126
            + A  + T H
Sbjct: 143 ELGADCLATGH 153


>gi|262165605|ref|ZP_06033342.1| queuosine Biosynthesis QueC ATPase [Vibrio mimicus VM223]
 gi|262025321|gb|EEY43989.1| queuosine Biosynthesis QueC ATPase [Vibrio mimicus VM223]
          Length = 231

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQKLAKQL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 GVAAHKV 60


>gi|262171604|ref|ZP_06039282.1| queuosine Biosynthesis QueC ATPase [Vibrio mimicus MB-451]
 gi|261892680|gb|EEY38666.1| queuosine Biosynthesis QueC ATPase [Vibrio mimicus MB-451]
          Length = 231

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQKLAKQL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 GVAAHKV 60


>gi|258621537|ref|ZP_05716570.1| ExsB protein [Vibrio mimicus VM573]
 gi|258586155|gb|EEW10871.1| ExsB protein [Vibrio mimicus VM573]
          Length = 231

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQKLAKQL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 GVAAHKV 60


>gi|258627552|ref|ZP_05722329.1| ExsB protein [Vibrio mimicus VM603]
 gi|258580134|gb|EEW05106.1| ExsB protein [Vibrio mimicus VM603]
          Length = 231

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQKLAKQL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 GVAAHKV 60


>gi|162451952|ref|YP_001614319.1| GMP synthase [Sorangium cellulosum 'So ce 56']
 gi|161162534|emb|CAN93839.1| GMP synthase (glutamine-hydrolysing) [Sorangium cellulosum 'So ce
           56']
          Length = 524

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 106/327 (32%), Gaps = 45/327 (13%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           S +E     VR    P+  +++ +SGG DS    +     L DR       + I VD+  
Sbjct: 211 SFVEEAIAAVREKAGPSDRVILGLSGGVDSSVAAVLCQRALGDR------LTCIFVDNGL 264

Query: 62  LRETAKDEVRYVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALIS 111
           LRE    E   V         + +     S +          P+       R        
Sbjct: 265 LREG---EAESVERTFRGHFHMNLDAVDASARFLEGLRGVVDPEQKRKVIGRLFIEVFEE 321

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  +   A  ++    + D +E+V  +      +    + G+ +     +NL +  P   
Sbjct: 322 EAKRVQGAKWLVQGTLYPDVIESVSFKGPSAVIKSHHNVGGLPE----RMNLGLIEPLRE 377

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRFER--------VRVRRFVRDIDLHALYLKMKKF 223
             ++++R+      +         D  + +        VR    V    L  L      F
Sbjct: 378 LFKDEVRAAGEALGMP-------RDILYRQPFPGPGLAVRCLGEVTPEKLRVLREADAIF 430

Query: 224 QDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPG 283
                      ++     + + +RS + +  D    D  +    +  +  +      LP 
Sbjct: 431 DQEIRAAGLYESLWQSFCVLLPVRS-VGVMGDERTYDEAIALRAVHSTDGMTADWARLP- 488

Query: 284 YRSMERVMLFLKSGKRGCVSIGRVVID 310
           Y  + RV   + +  RG   + RVV+D
Sbjct: 489 YDLIARVSSRIINEVRG---VNRVVLD 512


>gi|226295086|gb|EEH50506.1| GMP synthase [Paracoccidioides brasiliensis Pb18]
          Length = 548

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 30/200 (15%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE +R  V        ++ AVSGG DS      +   + DR      F A+ VD+  LR 
Sbjct: 225 IERIRKLV---GEKGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDNGVLRL 275

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVV--SWKNSKPQTGLMAAAREARY---ALISEHAKTI- 117
               E   V + +   L +  +VV  S +      G+       R        E  +   
Sbjct: 276 N---EAAIVKETLTRHLGVNLTVVDASERFLGKLKGIKDDPERKRKVIGNTFIEVFQEEA 332

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------LYDLNLWISR 167
                       + ++E +   +      + +   G   TI         L  ++L +  
Sbjct: 333 KKIAAAAKGSHNEGEIEWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLEGMHLKLIE 392

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R   +Q  I 
Sbjct: 393 PLRELFKDEVRELGVQLGIP 412


>gi|254462137|ref|ZP_05075553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium HTCC2083]
 gi|206678726|gb|EDZ43213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 381

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 57/190 (30%), Gaps = 47/190 (24%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L S   D     ++      DH             A  
Sbjct: 18  PSDTRVVVAMSGGVDSSVVAAQLASEGYDVVGVTLQLY----DHG--AALAKKGACCAGL 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V   +   H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK ++A  + T H             QR    +   L    D    D +      FL  
Sbjct: 132 TAKDLDADCMATGH-----------YIQRKMGPEKAELHAAADGA-RDQSY-----FLFS 174

Query: 173 RREDIRSFLL 182
            +++   FL 
Sbjct: 175 TKQEQLDFLR 184


>gi|134093604|ref|YP_001098679.1| tRNA-specific 2-thiouridylase MnmA [Herminiimonas arsenicoxydans]
 gi|205816908|sp|A4G213|MNMA_HERAR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|133737507|emb|CAL60550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 372

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 52/203 (25%), Gaps = 47/203 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               +++ +SGG DS      L     +     +K               D+  Y     
Sbjct: 2   AKKRVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + +    V++             RE                       +
Sbjct: 52  DWIDAASVADVVGVDIEAVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTFD--------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           HA  + A +I T H           D  +   +++     ++   L  +    L      
Sbjct: 112 HAMLLGADMIATGHYARVREVTSGPDAGQVQLLKAVDASKDQSYFLHRLNQAQLSKT--- 168

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
              P    R+ ++R    Q  + 
Sbjct: 169 -LFPLGEIRKTEVRKIAEQLQLP 190


>gi|116051794|ref|YP_789364.1| GMP synthase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|122260940|sp|Q02RS2|GUAA_PSEAB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115587015|gb|ABJ13030.1| GMP synthase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 90/280 (32%), Gaps = 46/280 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V  + +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 221 VRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 274

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
             +     + +   V+         G +A             R        E  K  +  
Sbjct: 275 --AMFAENMGVK--VIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATKLQDVK 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  D+   +  P     ++++R  
Sbjct: 331 FLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRKI 387

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            L+  + +       D  +     R          L ++      +  +V    A L+ +
Sbjct: 388 GLELGLPY-------DMVY-----RH---PFPGPGLGVR------ILGEVKKEYADLLRQ 426

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
              + +  + A         + ++F  ++    +  G+  
Sbjct: 427 ADHIFIEELRAFDWYHKTSQAFVVFQPVKSVGVVGDGRRY 466


>gi|86608784|ref|YP_477546.1| hypothetical protein CYB_1309 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557326|gb|ABD02283.1| conserved hypothetical protein TIGR00268 [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 306

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 43/182 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDV 76
            +LVA SGG DS  +       L +R+       A++        +     +++      
Sbjct: 50  QVLVAYSGGVDSSLVAKLACDQLGERAL------AVT------AASPSLLPEDLEEAIQQ 97

Query: 77  CSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             ++ I H +V          +          +   +  +   A+      ++     DD
Sbjct: 98  ARQIGIRHQIVETHELEDPSYAANPVNRCYFCKSHLHDTLRLLAQAQGYNHVVDGLNADD 157

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRSFLLQRNISW 188
                              L+             +  P       + ++R       +SW
Sbjct: 158 -------------------LADYRPGTQAARERGVRSPLAEVGMSKLEVRQLSRHLGLSW 198

Query: 189 CE 190
            +
Sbjct: 199 WD 200


>gi|160936272|ref|ZP_02083645.1| hypothetical protein CLOBOL_01168 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441082|gb|EDP18806.1| hypothetical protein CLOBOL_01168 [Clostridium bolteae ATCC
           BAA-613]
          Length = 424

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 66/222 (29%), Gaps = 51/222 (22%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----- 59
            ++SV+     +     +++A SGG D+         +   +     +     +D     
Sbjct: 2   KVQSVQQSQEDINMKEKVVLAYSGGLDTTA------IIPWLKEHFGYEVICCCIDCGQGS 55

Query: 60  --------HCLRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI 110
                     L   +K      V D C    +     +           + AR A    +
Sbjct: 56  ELDGLDERAKLSGASKLYIEDLVDDFCDNYIMPCVKANAVYENKYLLGTSMARPAIAKRL 115

Query: 111 SEHAKTINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + A+   A+ I    T   +DQ+               +G+  +        ++ I  P
Sbjct: 116 VDIARKEGASAICHGATGKGNDQI------------RFELGIKALAP------DIKIIAP 157

Query: 169 FLRC------RREDIRSFLLQRNISWCED-PSNTDDRFERVR 203
           +          RED   +  Q  I    D P + D  + R R
Sbjct: 158 WRMTDVWTMQSREDEIEYCKQHGI----DLPFSADSSYSRDR 195


>gi|293609749|ref|ZP_06692051.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828201|gb|EFF86564.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 377

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 42/198 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--------DEVRY 72
            ++V +SGG DS      L           +K           E           +++  
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNW---------EEDDGTEYCTAMEDLAD 54

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
              V  ++ I     ++                AA R          E ++    +HA T
Sbjct: 55  AQAVADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMT 114

Query: 117 INATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  I T H    + ET        Y    R           +      ++N  +  P 
Sbjct: 115 LGADFIATGHYAR-RGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLF-PV 172

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R    + +++
Sbjct: 173 GEIEKPEVRRIAEELDLA 190


>gi|291443190|ref|ZP_06582580.1| exsB protein [Streptomyces roseosporus NRRL 15998]
 gi|291346137|gb|EFE73041.1| exsB protein [Streptomyces roseosporus NRRL 15998]
          Length = 229

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 23 LVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++A VSGG DS+ L   LH+          +   +S+D+  R   + E  Y      R+ 
Sbjct: 10 VIAIVSGGLDSVVLAHHLHA-------EGHEVHLLSIDYGQRH--RKEHDYARIAADRIG 60

Query: 82 IAHSVVSWKNSK 93
            H +V   N  
Sbjct: 61 AEHEIVDLSNVA 72


>gi|282879609|ref|ZP_06288340.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella timonensis CRIS 5C-B1]
 gi|281306557|gb|EFA98586.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella timonensis CRIS 5C-B1]
          Length = 514

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    ++  +    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 198 SFVETTVKELKQQLGNDRVILGLSGGVDSSVCATLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKD 254


>gi|113868951|ref|YP_727440.1| sulfate adenylyltransferase subunit 2 [Ralstonia eutropha H16]
 gi|113527727|emb|CAJ94072.1| sulfate adenylyltransferase subunit 2 [Ralstonia eutropha H16]
          Length = 321

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H   E      + V+++ +RL +
Sbjct: 50  FSGGKDSIVMLHLALKAFRLGERKIELPFPLVHIDTGHNYPEVIAFRDQRVAELGARLVV 109

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E         +M     D
Sbjct: 110 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIGEHQFDALMGGARRD 157


>gi|68536810|ref|YP_251515.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium jeikeium K411]
 gi|91206802|sp|Q4JTG0|GUAA_CORJK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|68264409|emb|CAI37897.1| GMP synthase [Corynebacterium jeikeium K411]
          Length = 529

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 69/197 (35%), Gaps = 29/197 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE VR     +      +  +SGG DS     A+ + L  R+ G  + + + VDH L R 
Sbjct: 215 IEQVR---EQIGDEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRA 265

Query: 65  TAKDEVR--YVSDVCSRL----------RIAHSVVSWKNSKPQTGLMAAAREARYAL--I 110
             +++V   +V+   ++L          +    V   +  +   G        R     +
Sbjct: 266 GEREQVEKDFVAATGAKLVTVDEREAFLQKLAGVTEPEAKRKAIGAEFIRSFERAVAGVL 325

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           ++  +  +   ++    + D +E+             +        +  D+   +  P  
Sbjct: 326 ADAPEGSSVDFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPDDVEFELVEPLR 380

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 381 LLFKDEVRAVGRELGLP 397


>gi|23014122|ref|ZP_00053956.1| COG0519: GMP synthase, PP-ATPase domain/subunit [Magnetospirillum
           magnetotacticum MS-1]
          Length = 444

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           VR+ V    ++  +SGG DS  +   LH  + D      + + + VD    R    ++V 
Sbjct: 213 VRAQVGSGRVICGLSGGVDSSVVAALLHEAIGD------QLTCVFVDTGFMRAGESEQVV 266

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V     R  I                  + P+                E      A  +
Sbjct: 267 SVFR--DRFNIKLVHKDASGLFLDKLAGLTDPEKKRKIIGATFIDVFEEEARAVGGADFL 324

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R+   
Sbjct: 325 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRALGR 381

Query: 183 QRNIS 187
           +  + 
Sbjct: 382 ELGLP 386


>gi|319902815|ref|YP_004162543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Bacteroides helcogenes P 36-108]
 gi|319417846|gb|ADV44957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Bacteroides helcogenes P 36-108]
          Length = 354

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVDHCLRETAKDEVRYVSDVC 77
          +I V +SGG DS  ++  L       S   IK     A  +D      A++++   S + 
Sbjct: 2  NIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKIGKDDADYMD----CAAEEDLEIASAIA 57

Query: 78 SRLRIAHSVVSWKNS 92
           R  +   VV     
Sbjct: 58 RRYGLPLEVVDLHRE 72


>gi|319793529|ref|YP_004155169.1| gmp synthase, large subunit [Variovorax paradoxus EPS]
 gi|315595992|gb|ADU37058.1| GMP synthase, large subunit [Variovorax paradoxus EPS]
          Length = 538

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I      +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 210 MRDHIAEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 263

Query: 62  L 62
           L
Sbjct: 264 L 264


>gi|170704055|ref|ZP_02894692.1| GMP synthase, large subunit [Burkholderia ambifaria IOP40-10]
 gi|170131034|gb|EDS99724.1| GMP synthase, large subunit [Burkholderia ambifaria IOP40-10]
          Length = 539

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 207 NHIEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 259


>gi|145554190|gb|ABP68893.1| unknown [Bacillus sp. PL-12]
          Length = 218

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ D+  R   + E++   D+ S L
Sbjct: 7  VVV-FSGGQDSTTCLFWAMKEFK--------EVEAVTFDYNQRX--RTEIQCAKDIASGL 55

Query: 81 RIAHSVVS 88
           + H V+ 
Sbjct: 56 GVKHHVLD 63


>gi|56416599|ref|YP_153673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma marginale str. St. Maries]
 gi|222474965|ref|YP_002563380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Florida]
 gi|269958985|ref|YP_003328774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma centrale str. Israel]
 gi|81359210|sp|Q5PBB1|MNMA_ANAMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56387831|gb|AAV86418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma marginale str. St. Maries]
 gi|222419101|gb|ACM49124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Florida]
 gi|269848816|gb|ACZ49460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma centrale str. Israel]
          Length = 387

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 59/233 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRYVS 74
           ++VA+SGG DS  +   LH          ++       H     +         ++    
Sbjct: 31  VVVAMSGGVDSSVVAALLHERGYKVIGATMQL------HSSSPASGAKSCCGSVDIYDAK 84

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS----------------------- 111
            V S L   H V+ ++            RE     I+                       
Sbjct: 85  RVASTLGFPHYVLDYE--------EVFRREVIDDFINSYKRGETPIPCVKCNQTVKFRDM 136

Query: 112 -EHAKTINATLIMTAHT------FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            + A+ I   ++ T H         +Q      +  R    +      +  ++  +   +
Sbjct: 137 LKAARAIGGDVVATGHYVRRVEIAGEQ------QILRGKDPQKDQSYFLF-SVTSEQLKF 189

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHAL 216
           +  P     + ++R    Q N+   + P + D  F      R  +R++D  ++
Sbjct: 190 LRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 242


>gi|256752921|ref|ZP_05493754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748201|gb|EEU61272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 172

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 32/141 (22%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH----------C 61
           F+ ++     + + +SGG DS      L     D     ++     VDH          C
Sbjct: 20  FIYNMEINNRVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVW---VDHEAKAFDSDKSC 76

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REA 105
               A  + + V+++   L I H                 V+               R+ 
Sbjct: 77  CSLKATQDAKKVAEI---LGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQI 133

Query: 106 RYALISEHAKTINATLIMTAH 126
           ++  + E A  + A  I T H
Sbjct: 134 KFGELLEKAFELGAYYIATGH 154


>gi|229892363|gb|ACQ89825.1| MIP06849p [Drosophila melanogaster]
          Length = 283

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           E    ++R  V    +L+ VSGG DS      L      R+    +  A+ VD
Sbjct: 216 EECIRYIREKVGNNKVLLLVSGGVDSSVCAALL-----RRALYPHQIIAVHVD 263


>gi|239815742|ref|YP_002944652.1| GMP synthase [Variovorax paradoxus S110]
 gi|239802319|gb|ACS19386.1| GMP synthase, large subunit [Variovorax paradoxus S110]
          Length = 539

 Score = 44.9 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I      +R  V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 210 MRDHIAEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 263

Query: 62  L 62
           L
Sbjct: 264 L 264


>gi|332528907|ref|ZP_08404877.1| GMP synthase [Hylemonella gracilis ATCC 19624]
 gi|332041664|gb|EGI78020.1| GMP synthase [Hylemonella gracilis ATCC 19624]
          Length = 539

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
            I+     ++  V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 213 HIDEAVAAIKHQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 264


>gi|255002942|ref|ZP_05277906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Puerto Rico]
 gi|255004068|ref|ZP_05278869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Virginia]
          Length = 379

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 59/233 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRYVS 74
           ++VA+SGG DS  +   LH          ++       H     +         ++    
Sbjct: 23  VVVAMSGGVDSSVVAALLHERGYKVIGATMQL------HSSSPASGAKSCCGSVDIYDAK 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS----------------------- 111
            V S L   H V+ ++            RE     I+                       
Sbjct: 77  RVASTLGFPHYVLDYE--------EVFRREVIDDFINSYKRGETPIPCVKCNQTVKFRDM 128

Query: 112 -EHAKTINATLIMTAHT------FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            + A+ I   ++ T H         +Q      +  R    +      +  ++  +   +
Sbjct: 129 LKAARAIGGDVVATGHYVRRVEIAGEQ------QILRGKDPQKDQSYFLF-SVTSEQLKF 181

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHAL 216
           +  P     + ++R    Q N+   + P + D  F      R  +R++D  ++
Sbjct: 182 LRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234


>gi|172040081|ref|YP_001799795.1| GMP synthase [Corynebacterium urealyticum DSM 7109]
 gi|171851385|emb|CAQ04361.1| GMP synthase [Corynebacterium urealyticum DSM 7109]
          Length = 523

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 68/199 (34%), Gaps = 29/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE VR     +      +  +SGG DS     A+ + +  R+ G  + + + VDH  L
Sbjct: 207 ELIEQVR---EQIGEDGRAICGLSGGVDS-----AVAAAIVQRAVGD-RLTCVFVDHGLL 257

Query: 63  RETAKDEVR--YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA--------REARYALIS 111
           R   +++V   +V+   ++L  +       K     T   A          R    A+  
Sbjct: 258 RAGEREQVENDFVAATGAKLVTVDEREAFLKRLDGVTDPEAKRKAIGAEFIRSFERAVAG 317

Query: 112 EHAKTINA---TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
             A +        ++    + D +E+             +        +  D+   +  P
Sbjct: 318 VLADSPEGSTVDFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFKLVEP 372

Query: 169 FLRCRREDIRSFLLQRNIS 187
             +  ++++R+   +  + 
Sbjct: 373 LRQLFKDEVRAVGRELGLP 391


>gi|119775492|ref|YP_928232.1| GMP synthase [Shewanella amazonensis SB2B]
 gi|226739725|sp|A1S856|GUAA_SHEAM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|119767992|gb|ABM00563.1| GMP synthase (glutamine-hydrolyzing) [Shewanella amazonensis SB2B]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +++ V    +++ +SGG DS    + LH  + +R       + + VD+  L
Sbjct: 212 SIIEDAVERIKAQVGDDEVILGLSGGVDSSVTAMLLHRAIGER------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAA----REARYALISE 112
           R     E + V +       +    V  +N      K +    A      R        E
Sbjct: 266 RLN---EAKQVLEMFGDHFGLNIVHVDAENRFLEALKGENDPEAKRKIIGRVFVEIFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            +K +NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 ASKCVNAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|312116059|ref|YP_004013655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311221188|gb|ADP72556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 395

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 49/200 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET---AKDEVRYVS 74
            I+VA+SGG DS      +     D     ++      DH     R+    A  ++    
Sbjct: 34  RIVVAMSGGVDSSLTAALVKRAGYDTVGITLQLY----DHGEAMARKGACCAGQDIMDAR 89

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTIN 118
            V  RL + H V+ +++   Q+ +   A                   ++  +   A+ + 
Sbjct: 90  GVADRLGVPHYVLDYEDRFRQSVIDDFADSYLAGETPVPCVRCNQTVKFRDLLGAARELG 149

Query: 119 ATLIMTAHTFDDQLETVYMRSQRD-YAEKGMGLSGMCDT----------ILYDLNLWISR 167
           A+ ++T H              R     +G+ +    D                  ++  
Sbjct: 150 ASALVTGH------------YVRSVPGPRGIEMHQAADPDRDQSYFLFATTQAQLDFLRF 197

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + + R      ++ 
Sbjct: 198 PLGGMTKTETREMAAALHLP 217


>gi|254510076|ref|ZP_05122143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacteraceae bacterium KLH11]
 gi|221533787|gb|EEE36775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacteraceae bacterium KLH11]
          Length = 381

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 54/222 (24%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLY----DHG--AALAKKGACCAGI 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V       H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
            A+ + A  + T H             QR     G  L    +    D + ++       
Sbjct: 132 TARDLEADCMATGH-----------YIQRKMGPNGSELHS-AEDANRDQSYFLFSTTPEQ 179

Query: 168 ------PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                 P      ++  R    Q  ++  + P + D  F   
Sbjct: 180 LDFLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPN 221


>gi|218130121|ref|ZP_03458925.1| hypothetical protein BACEGG_01708 [Bacteroides eggerthii DSM 20697]
 gi|217987625|gb|EEC53953.1| hypothetical protein BACEGG_01708 [Bacteroides eggerthii DSM 20697]
          Length = 377

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           L+ VSGG DS  +               ++  AI +D+     ++   + + ++  +L+I
Sbjct: 70  LIGVSGGVDSTYVAYLCVKY-------GLRPLAIHLDNGW--NSELAEQNIKNLVDKLQI 120

Query: 83  AHSVVSWK 90
               +   
Sbjct: 121 DFERIKVD 128


>gi|148651832|ref|YP_001278925.1| GMP synthase [Psychrobacter sp. PRwf-1]
 gi|148570916|gb|ABQ92975.1| GMP synthase (glutamine-hydrolyzing) [Psychrobacter sp. PRwf-1]
          Length = 532

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 31/194 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 222 LKEQIGDKQVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 275

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGL---MAAAREARY-------ALISEHAKTIN--- 118
            V      + +   VV               +     R         + ++ A+ I+   
Sbjct: 276 QV--FAENMGVK--VVRVDAEDRFLSALAGESEPEAKRKIIGKTFIDVFADAARDISQGS 331

Query: 119 ----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +     + D +E+      + +  K          +  DL   +  P     +
Sbjct: 332 DGKPVEFLAQGTIYPDVIESAKSHQGKAHVIKS---HHNVGGLPDDLQFELVEPLRDLFK 388

Query: 175 EDIRSFLLQRNISW 188
           +++R   +   +  
Sbjct: 389 DEVRKLGIALGLPH 402


>gi|269468374|gb|EEZ80039.1| GMP synthase, PP-ATPase domain/subunit [uncultured SUP05 cluster
           bacterium]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 67/187 (35%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ V   ++L+ +SGG DS  +   LH  + +      + + + VD+  LR    DEV 
Sbjct: 221 LKNQVGNNNVLLGLSGGVDSSVVAALLHQAVGN------QLTCVFVDNGLLRLNEGDEVM 274

Query: 72  YVSDVCSRLRIAHSVVSWKNSKP---QTGLMAAAREARY-------ALISEHAKTI-NAT 120
                   + +   V+     K         A   + R         +  E AK + N  
Sbjct: 275 --QTFADNMGVK--VIRANAQKKFYDALADEADPEKKRKIIGGAFIEVFEEEAKNLDNIK 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +    K +        +  DL   +  P     ++++R+ 
Sbjct: 331 FLAQGTIYPDVIES---AGAKSGKAKVIKSHHNVGGLPEDLKFELVEPLKELFKDEVRTI 387

Query: 181 LLQRNIS 187
            ++  I 
Sbjct: 388 GVKLGIP 394


>gi|317047745|ref|YP_004115393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. At-9b]
 gi|316949362|gb|ADU68837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. At-9b]
          Length = 370

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 51/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAADDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEH 113
                VC +L I    V++              E +                  A +   
Sbjct: 57  ADAQAVCDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADFIATGHYVRRQDIDGQSRLLRGLDGNKDQSYFLYTLSHEQVAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q ++
Sbjct: 173 ELEKPEVRRIAEQLDL 188


>gi|242814184|ref|XP_002486320.1| GMP synthase [Talaromyces stipitatus ATCC 10500]
 gi|218714659|gb|EED14082.1| GMP synthase [Talaromyces stipitatus ATCC 10500]
          Length = 543

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 68/206 (33%), Gaps = 33/206 (16%)

Query: 4   SPIESVRFFVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I+     +R LV   A +L AVSGG DS      + + + DR      F A+ +++  
Sbjct: 216 NFIDKEIARIRKLVGDKAQVLGAVSGGVDSTVAAQLMKTAIGDR------FHAVLINNGV 269

Query: 62  LRETAKDEVRYVSDVCSR-LRIAHSVVSW--------------KNSKPQTG------LMA 100
           +R    DE   V     + L I  ++V                +  +   G         
Sbjct: 270 MR---LDECTQVQQTLQQHLGINLTIVDGSELFLGRLKGVTEPERKRKIIGETFIDLFEE 326

Query: 101 AAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
            A+                   +    + D +E++  +      +    + G+   ++  
Sbjct: 327 EAKRIEKEA-ENTPNAGKVEWFLQGTLYPDVIESLSFKGPSATIKTHHNVGGLPARMMNG 385

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNI 186
             L +  P     ++++R    Q  I
Sbjct: 386 QGLKLIEPLRELFKDEVRDLGRQLGI 411


>gi|254469725|ref|ZP_05083130.1| exsB protein [Pseudovibrio sp. JE062]
 gi|211961560|gb|EEA96755.1| exsB protein [Pseudovibrio sp. JE062]
          Length = 232

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 27 SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86
          SGG DS+ L      V  +          +S D+  R   K E+ Y +    +L + H +
Sbjct: 8  SGGLDSVTLAY---KVAREHEL----LGLVSFDYGQRH--KKELDYAAHAAKQLGVPHHI 58

Query: 87 VS 88
          + 
Sbjct: 59 LD 60


>gi|160898454|ref|YP_001564036.1| GMP synthase [Delftia acidovorans SPH-1]
 gi|160364038|gb|ABX35651.1| GMP synthase, large subunit [Delftia acidovorans SPH-1]
          Length = 540

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 215 IEEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 265


>gi|83590486|ref|YP_430495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moorella thermoacetica ATCC 39073]
 gi|123524262|sp|Q2RHY7|MNMA_MOOTA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|83573400|gb|ABC19952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Moorella thermoacetica ATCC 39073]
          Length = 357

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 56/201 (27%), Gaps = 54/201 (26%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDR-----------------SFGKIKFSAISVDHCLRETA 66
           VA+SGG DS      L     +                    G     A+          
Sbjct: 2   VAMSGGVDSSTAAALLKEAGYEVIGVTLALWPEDTPPPPGETGCCSLKAV---------- 51

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALI 110
            D+ R V+++   L I + V+++++                        A  R  ++  +
Sbjct: 52  -DDARRVANI---LDIPYYVLNFRDLFEREVIDYFIASYLEGETPNPCIACNRRIKFGAL 107

Query: 111 SEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
              A+ +    I T H      D +     +   RD  +     S    T   +      
Sbjct: 108 LAKARALGIDYIATGHYARRWYDKEKGRYLLARGRDAGKDQ---SYALYTFTQEQLAHTL 164

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P     + ++R    +  + 
Sbjct: 165 LPLGDYTKVEVREIAARYGLP 185


>gi|16330399|ref|NP_441127.1| tRNA-specific 2-thiouridylase MnmA [Synechocystis sp. PCC 6803]
 gi|3122978|sp|P73755|MNMA_SYNY3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|1652889|dbj|BAA17807.1| sll0844 [Synechocystis sp. PCC 6803]
          Length = 358

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 23/80 (28%)

Query: 21 HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           ++V +SGG DS      LH          +   +  G+     + VD            
Sbjct: 4  KVVVGLSGGVDSSVAAALLHRQGYAVVGVTLWLMKGKGQCCSEGL-VD------------ 50

Query: 72 YVSDVCSRLRIAHSVVSWKN 91
            + +C +L + H +V  ++
Sbjct: 51 -AASICEQLGVPHEIVDTRD 69


>gi|291522307|emb|CBK80600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Coprococcus catus GD/7]
          Length = 368

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 48/141 (34%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------------------RSFGKIKFSAISVDHC 61
             ++V +SGG DS      L     D                   + G    SA+     
Sbjct: 4   KKVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQIWQEEEDEIVEENGGCCGLSAV----- 58

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAARE-------ARY- 107
                 D+ R V     R+ I + V++++    +             R         RY 
Sbjct: 59  ------DDARRV---AERIGIPYYVMNFREVFREKVIDNFVSEYEKGRTPNPCIVCNRYV 109

Query: 108 --ALISEHAKTINATLIMTAH 126
               + E A  + A  I T H
Sbjct: 110 KWEALLEKALALGADYIATGH 130


>gi|289678019|ref|ZP_06498909.1| ExsB family protein [Pseudomonas syringae pv. syringae FF5]
          Length = 201

 Score = 44.9 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS+         ++      I   A ++++  +  A+ E+     +C +L I H 
Sbjct: 7   LSGGMDSLT--------IAWWKRPDI---AFTLNYG-QLAAQAEIEASRTICQQLGIPHH 54

Query: 86  VVSWKNSKPQTGLMA 100
           V+     +  +G MA
Sbjct: 55  VIEVDCRQLGSGDMA 69


>gi|315634990|ref|ZP_07890271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
 gi|315476252|gb|EFU67003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
          Length = 383

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 52/198 (26%), Gaps = 47/198 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 24  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 73

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 74  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFKAFLEYA 133

Query: 114 AKTINATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           A+ + A  I T H       DD  +   +R      ++   L  +    +         P
Sbjct: 134 AEDLGANYIATGHYVRRRGADDNAQ--LLRGLDANKDQSYFLYTLSKKQV----GQSLFP 187

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R+      +
Sbjct: 188 VGDIEKPIVRAIAEDLGL 205


>gi|262306065|gb|ACY45625.1| gln amidotransferase [Limnadia lenticularis]
          Length = 193

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRY 72
           R++     IL+ VSGG DS      LH  LSD      +  A+ +D+  LR+    E   
Sbjct: 39  RTVGRDKTILMLVSGGVDSAVCAALLHKALSD-GEDNSRVQAVHIDNGFLRKN---ESEQ 94

Query: 73  VSDVCSRLRIAHSVVS 88
           V +    L +   VV+
Sbjct: 95  VVESLRSLGLNLKVVN 110


>gi|298529721|ref|ZP_07017124.1| GMP synthase, large subunit [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511157|gb|EFI35060.1| GMP synthase, large subunit [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 516

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 4   SPIESVRFFVRSLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           S I+     +R ++     ++  +SGG DS  + + LH  +  R         I VD+  
Sbjct: 203 SFIQDCIQEIREMIPDDEQVVCGLSGGIDSTVVAVLLHKAIGKR------LHCILVDNGV 256

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKT 116
           LR     EV  V  +     +    V  ++                +   +  I    K 
Sbjct: 257 LRHNEALEV--VESLTKHFDLNLKHVEAQDLFLSRLHGVKDPEEKRKIIGHTFIEVFEKE 314

Query: 117 I----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                +   +     + D +E+V  +      +    + G+ +     ++L +  P    
Sbjct: 315 AKSIPDVKWLAQGTLYPDVIESVSFKGPSAVIKSHHNVGGLPEK----MDLKLVEPLREL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   ++  I 
Sbjct: 371 FKDEVRKVAVELGIP 385


>gi|116328677|ref|YP_798397.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330666|ref|YP_800384.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122281579|sp|Q04TZ4|MNMA_LEPBJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|122283538|sp|Q04ZN1|MNMA_LEPBL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|116121421|gb|ABJ79464.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124355|gb|ABJ75626.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 377

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 62/208 (29%), Gaps = 51/208 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------ 65
               I+VA+SGG DS      L     +          I V+  LR              
Sbjct: 2   SKGKIIVAMSGGVDSAVTAGLLMEEGYE---------VIGVN--LRTWEYEAPVCDTTKK 50

Query: 66  ---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-AR 106
              + +++R   DV   L+I   VV  +    +                          +
Sbjct: 51  SCCSPEDIRDARDVGLSLKIPFYVVKMEKVFQEKVIDRFIDDYQHGKTPNPCVECNTFVK 110

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW-- 164
           +  + E AK +    I T H        +    +R     G+ +       LY L+    
Sbjct: 111 FGALFEKAKALGIDKIATGHYAR-----IVRNGERYAISNGVDIGKNQAYYLYGLSQENL 165

Query: 165 --ISRPFLRCRREDIRSFLLQRNISWCE 190
             ++ P     + ++R    +  +S  +
Sbjct: 166 KNVTFPLGGMTKPEVREIARRMGLSVAD 193


>gi|107103288|ref|ZP_01367206.1| hypothetical protein PaerPA_01004357 [Pseudomonas aeruginosa PACS2]
 gi|313109183|ref|ZP_07795152.1| GMP synthase [Pseudomonas aeruginosa 39016]
 gi|310881654|gb|EFQ40248.1| GMP synthase [Pseudomonas aeruginosa 39016]
          Length = 527

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 90/280 (32%), Gaps = 46/280 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V  + +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 223 VRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 276

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
             +     + +   V+         G +A             R        E  K  +  
Sbjct: 277 --AMFAENMGVK--VIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATKLQDVK 332

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  D+   +  P     ++++R  
Sbjct: 333 FLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRKI 389

Query: 181 LLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPK 240
            L+  + +       D  +     R          L ++      +  +V    A L+ +
Sbjct: 390 GLELGLPY-------DMVY-----RH---PFPGPGLGVR------ILGEVKKEYADLLRQ 428

Query: 241 YLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQIS 280
              + +  + A         + ++F  ++    +  G+  
Sbjct: 429 ADHIFIEELRAFDWYHKTSQAFVVFQPVKSVGVVGDGRRY 468


>gi|161486247|ref|NP_753421.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli CFT073]
 gi|30173414|sp|Q8CXZ8|MNMA_ECOL6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 368

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 6   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 55

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 56  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 115

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 116 AEDLCADYIATGH 128


>gi|317402803|gb|EFV83347.1| tRNA-specific 2-thiouridylase mnmA [Achromobacter xylosoxidans C54]
          Length = 372

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 53/204 (25%), Gaps = 51/204 (25%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     +     +K               D+  Y     
Sbjct: 7   KKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNW----------EDDDDSEYCSTRQ 56

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
                + V   + +    V++                 A R          E ++    +
Sbjct: 57  DLLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 116

Query: 113 HAKTINATLIMTAHTF----------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           HA  + A  I T H              + E   +++     ++   L  +    L    
Sbjct: 117 HAMALGAEHIATGHYARVREVAAEGGGSRFE--LLKALDGSKDQSYFLHRLNQAQLSRT- 173

Query: 163 LWISRPFLRCRREDIRSFLLQRNI 186
                P     + ++R    +  +
Sbjct: 174 ---LFPLGEIHKTEVRRIAHEIGL 194


>gi|308187759|ref|YP_003931890.1| GMP synthase [Pantoea vagans C9-1]
 gi|308058269|gb|ADO10441.1| GMP synthase [Pantoea vagans C9-1]
          Length = 526

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  V    +++ +SGG DS    + LH  + DR       + + VD+  L
Sbjct: 213 KIIEDAIERLREQVGNDKVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E + V D       +    V  +           +P+       R        E
Sbjct: 267 RLN---EAQQVMDMFGDHFGLNIIHVPAEMRFLDALAGIDEPEAKRKTIGRVFVEVFDEE 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 324 ALKLQDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 381 FKDEVRKIGLELGLPY 396


>gi|289523006|ref|ZP_06439860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503549|gb|EFD24713.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 351

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 64/209 (30%), Gaps = 39/209 (18%)

Query: 16  LVYPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           + +   I+ A+SGG D S+ L     S+L+ +    +    +     + +  +++V    
Sbjct: 1   MTWKLRIITAISGGIDSSLAL-----SLLAKQGHEVVGCFLV-----MSDGHEEDVDRAR 50

Query: 75  DVCSRLRIAHSVVSWKNS---------------KPQTGLMAAAR-EARYALISEHAKTIN 118
            VC  L++    +  +                               ++  + +     N
Sbjct: 51  KVCELLKVPFYAIDIREKFQSEVIMPLITSYSNGKTPNPCVFCNPNVKFKTLFDLLNCYN 110

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  + T H      DD          R    K    S M   +  +    +  P     +
Sbjct: 111 SDFVATGHYAKIYKDDLN----YHLVRGRDPKKEQ-SYMLYRLPKNWLSSVIFPLGDLTK 165

Query: 175 EDIRSFLLQRNISWCED--PSNTDDRFER 201
            +++    +   +  +D   S  D  F R
Sbjct: 166 AEVKKKAREIFGNIFDDVEES-ADLCFLR 193


>gi|15598964|ref|NP_252458.1| GMP synthase [Pseudomonas aeruginosa PAO1]
 gi|218889947|ref|YP_002438811.1| GMP synthase [Pseudomonas aeruginosa LESB58]
 gi|296387717|ref|ZP_06877192.1| GMP synthase [Pseudomonas aeruginosa PAb1]
 gi|13627134|sp|Q9HXM6|GUAA_PSEAE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739703|sp|B7UXJ9|GUAA_PSEA8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|9949940|gb|AAG07156.1|AE004796_1 GMP synthase [Pseudomonas aeruginosa PAO1]
 gi|218770170|emb|CAW25932.1| GMP synthase [Pseudomonas aeruginosa LESB58]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V  + +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 221 VRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 274

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
             +     + +   V+         G +A             R        E  K  +  
Sbjct: 275 --AMFAENMGVK--VIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATKLQDVK 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  D+   +  P     ++++R  
Sbjct: 331 FLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRKI 387

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 388 GLELGLPY 395


>gi|229138126|ref|ZP_04266724.1| hypothetical protein bcere0013_12500 [Bacillus cereus BDRD-ST26]
 gi|229195636|ref|ZP_04322402.1| hypothetical protein bcere0001_12030 [Bacillus cereus m1293]
 gi|228587885|gb|EEK45937.1| hypothetical protein bcere0001_12030 [Bacillus cereus m1293]
 gi|228645471|gb|EEL01705.1| hypothetical protein bcere0013_12500 [Bacillus cereus BDRD-ST26]
          Length = 223

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAMEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +++   L I H+V+ 
Sbjct: 50 CAAEIAKELGIKHTVLD 66


>gi|149276507|ref|ZP_01882651.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter sp. BAL39]
 gi|149233027|gb|EDM38402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pedobacter sp. BAL39]
          Length = 353

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 54/226 (23%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV--------SDVCS 78
           SGG DS    + LH    ++ +  I  +  + D+    ++  E              +  
Sbjct: 2   SGGVDSSVAAVMLH----EQGYEVIGLTMKTWDYATSGSSSKETGCCSLDSINDARTLAV 57

Query: 79  RLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKTINATLI 122
                H ++  ++      +        A R            ++  + + A  ++   I
Sbjct: 58  NYGFPHYILDIRDEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRANKLDCEFI 117

Query: 123 MTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            T H  +    D    V  +   +  ++   L G+    L         P     + +IR
Sbjct: 118 ATGHYANVRQHDNGRHVISKGLDENKDQSYVLWGVSQENLARTKF----PLGSFAKSEIR 173

Query: 179 SFL------------LQRNISWCEDPSNTDDRFERVRVRRFVRDID 212
                              I +  D     + + R  +R  V D++
Sbjct: 174 QMALDMGQEELAKKSESYEICFVPD-----NDY-RSFLRHKVGDLE 213


>gi|26107782|gb|AAN79981.1|AE016759_255 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli CFT073]
          Length = 383

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 21  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADL 70

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++             A  +  R               A +   
Sbjct: 71  ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 130

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 131 AEDLCADYIATGH 143


>gi|307132050|ref|YP_003884066.1| GMP synthetase (glutamine aminotransferase) [Dickeya dadantii 3937]
 gi|306529579|gb|ADM99509.1| GMP synthetase (glutamine aminotransferase) [Dickeya dadantii 3937]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 27/196 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             +E +R      V    +++ +SGG DS    + LH  + DR       + + VD+  L
Sbjct: 216 DAVERIRV----QVGKDKVILGLSGGVDSSVTALLLHRAIGDR------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +    +  +    V+ +            P+       R        E
Sbjct: 266 RLN---EAEQVMEMFGDQFGLNIVHVAAEERFLSALAGIDDPEAKRKTIGRVFVDVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  D+ L +  P    
Sbjct: 323 AGKLTDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPDDMALGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|304406346|ref|ZP_07388003.1| GMP synthase, large subunit [Paenibacillus curdlanolyticus YK9]
 gi|304344930|gb|EFM10767.1| GMP synthase, large subunit [Paenibacillus curdlanolyticus YK9]
          Length = 512

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +R  V   ++L A+SGG DS  + + +H  + D      + + + +DH  LR+   +   
Sbjct: 211 IREQVGDKNVLCALSGGVDSSVVAMLIHKAIGD------QLTCMFIDHGMLRKGEAESVM 264

Query: 70  VRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
             +V      +++     S +        S P+        E  Y    E AK  +   +
Sbjct: 265 ETFVGKF--DMKVIKIDASERFLGKLKGVSDPEQKRKIIGNEFIYVFDEESAKLGDFAFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E            + +        +  D+   +  P     ++++R    
Sbjct: 323 AQGTLYTDIVE------SGTATAQTIKSHHNVGGLPEDMKFELVEPLKALFKDEVRKVGS 376

Query: 183 QRNIS 187
           +  + 
Sbjct: 377 ECGLP 381


>gi|317151738|ref|YP_004119786.1| asparagine synthase [Desulfovibrio aespoeensis Aspo-2]
 gi|316941989|gb|ADU61040.1| asparagine synthase [Desulfovibrio aespoeensis Aspo-2]
          Length = 258

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 29/185 (15%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            L     ++VA+SGG DS GL+ A             +  A++V   L   A  +V   S
Sbjct: 13  RLTPAGLLVVALSGGVDS-GLVAAAAHAAGTGPASGGRVVAVTVCSELS--AGRDVERAS 69

Query: 75  DVCSRLRIAHSVVSWK---NSKPQTGLMAAAREARYALISEHAKTINATLIMT-AHTFDD 130
            V   + +AH  ++ +   N   +          + A+     +      ++      DD
Sbjct: 70  AVARHIGLAHGTLTARLLENEAVRRNNADRCYHCKRAIFDLMRREFGQECLLVDGTNADD 129

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISW 188
                                     +       +  P   L   +  +R       +  
Sbjct: 130 --------------------DPARPGLRAAQEYGVFHPLKELAIPKVRVRELARGLGLPN 169

Query: 189 CEDPS 193
            + PS
Sbjct: 170 WDTPS 174


>gi|156387908|ref|XP_001634444.1| predicted protein [Nematostella vectensis]
 gi|156221527|gb|EDO42381.1| predicted protein [Nematostella vectensis]
          Length = 424

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 33/217 (15%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           F S I   R    +      +L+AVSGG  S+ +L  +    S R   +     + +++ 
Sbjct: 56  FRSTIGKARVIRHN----ERVLLAVSGGPASLAMLHFISEATSARRL-RFHPDVVFINNG 110

Query: 62  --LRETAKDEVRYVSDVCSRLRIAHSVV------SWKNSKPQTGLMAAA----------- 102
             +  + +D VR + +V  +   A  VV            P+  L A             
Sbjct: 111 AIIGVSTQDIVRKIHEVTMKAGFALHVVGLETLFRADKMSPEESLQALQTLFDSVTSLTA 170

Query: 103 -----REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
                R     L+ + A     + +M   + ++    +     +        ++   D+ 
Sbjct: 171 KEDLLRSLHQQLLVKVAMDEGYSRVMVGDSANNIAVHILSDISQGRGGALPFITAFNDS- 229

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSN 194
                + I RP      ++I  +     I      +N
Sbjct: 230 -RHDGISILRPMREFIAKEICLYNHFMGIDAI--STN 263


>gi|153004390|ref|YP_001378715.1| GMP synthase [Anaeromyxobacter sp. Fw109-5]
 gi|152027963|gb|ABS25731.1| GMP synthase, large subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 518

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 26/189 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V   H++ A+SGG DS    + +H  + DR         I VD+  LR   + +V 
Sbjct: 211 IRAQVKDGHVICALSGGVDSAVAALLVHRAIGDR------LRCIFVDNGVLRAGERAQVE 264

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEH----AKTIN 118
            V        +    V               P+       RE       +     A    
Sbjct: 265 EV--FGGMFHLPLVTVDASARFLARLAGVTDPEQKRKIIGREFIAVFEEQVEDLAAHGER 322

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  ++    + D +E+V  +      +    + G+ +     + L +  P     ++++R
Sbjct: 323 AQFLVQGTLYPDVIESVSFKGPSATIKSHHNVGGLPEV----MKLGLVEPLRELFKDEVR 378

Query: 179 SFLLQRNIS 187
              L+  + 
Sbjct: 379 RLGLELGLP 387


>gi|299470175|emb|CBN78203.1| tRNA-methyltransferase [Ectocarpus siliculosus]
          Length = 478

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +SGG DS   +  L           +K         ++ C     ++++ Y + VC +  
Sbjct: 3   LSGGVDSSVAMRLLLDQGYKIRAFYLKIWLEDELAHLNEC--PW-EEDLAYATAVCEQAG 59

Query: 82  IAHSVVSWKNSKPQTGLMAAAREAR 106
           +   VV  +       +    REAR
Sbjct: 60  VPLEVVPLQREYWDQVVSYTVREAR 84


>gi|226326332|ref|ZP_03801850.1| hypothetical protein PROPEN_00180 [Proteus penneri ATCC 35198]
 gi|225205283|gb|EEG87637.1| hypothetical protein PROPEN_00180 [Proteus penneri ATCC 35198]
          Length = 525

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 23/194 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE     ++  +   H+++A+SGG DS    + L+  +  R       + + VD+ L R 
Sbjct: 214 IEDTVARLKEQIGDDHVILALSGGVDSSVTALLLNRAIGKR------LTCVFVDNGLLRL 267

Query: 65  TAKDEVRYVSDVCS---RLRIAH---SVVSWKNSKPQTGLMAAAREARYALIS----EHA 114
               E   V ++      L I H           K +       +   +  I     E  
Sbjct: 268 N---EAEQVMEMFKGKFDLNIIHVEAEDRFLTALKGENDPEKKRKIIGHTFIEIFDEEAV 324

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K      +     + D +E+    + + +  K          +  D+ L +  P     +
Sbjct: 325 KQPQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPEDMKLGLVEPLKELFK 381

Query: 175 EDIRSFLLQRNISW 188
           +++R   L+  + +
Sbjct: 382 DEVRKIGLELGLPY 395


>gi|150020613|ref|YP_001305967.1| GMP synthase [Thermosipho melanesiensis BI429]
 gi|226739759|sp|A6LKY1|GUAA_THEM4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149793134|gb|ABR30582.1| GMP synthase, large subunit [Thermosipho melanesiensis BI429]
          Length = 513

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +V    +++ +SGG DS  + + LH  + D          + VD   LR    +E  
Sbjct: 206 IKGIVGNDKVILGLSGGVDSSVVAMLLHKAIGD------NLVPVFVDTGLLRLNEGEE-- 257

Query: 72  YVSDVCSRLRIAHSVVSWK 90
            V +   RL I   VV  K
Sbjct: 258 -VKENFERLGIKIFVVDAK 275


>gi|117924260|ref|YP_864877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Magnetococcus sp. MC-1]
 gi|205816907|sp|A0L678|MNMA_MAGSM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|117608016|gb|ABK43471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Magnetococcus sp. MC-1]
          Length = 358

 Score = 44.9 bits (105), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH------CLRE-TAKD 68
          +  P  + VA+SGG DS      L     +     ++      DH        R   A D
Sbjct: 1  MTQPQRVAVAMSGGVDSSATAALLVEQGYEVIGLTMQLW----DHSSPKVAGSRSCCALD 56

Query: 69 EVRYVSDVCSRLRIAHSVVSWKNSKPQT 96
          ++     V   L I + VV+++    Q 
Sbjct: 57 DLYDARQVAQTLGIPYYVVNYEADFRQA 84


>gi|254430367|ref|ZP_05044070.1| GMP synthase [Cyanobium sp. PCC 7001]
 gi|197624820|gb|EDY37379.1| GMP synthase [Cyanobium sp. PCC 7001]
          Length = 548

 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           VR  V    +L+A+SGG DS  L   LH  + D+
Sbjct: 238 VRRQVGEKRVLLALSGGVDSSTLAFLLHKAIGDQ 271


>gi|85059726|ref|YP_455428.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Sodalis glossinidius str. 'morsitans']
 gi|123519089|sp|Q2NS52|GUAA_SODGM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|84780246|dbj|BAE75023.1| GMP synthase [Sodalis glossinidius str. 'morsitans']
          Length = 525

 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 64/196 (32%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE     +R  V    +++ +SGG DS    + LH  + +R       + + VD+ L 
Sbjct: 212 KIIEDAVARIREQVGNDRVILGLSGGVDSSVTAMLLHRAIGER------LTCVFVDNGLL 265

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R   A   +           +    V  ++           P+T      R        +
Sbjct: 266 RLNEASQVMEM---FGDHYGLNIIAVPAEDRFLSALAGIDDPETKRKTIGRVFVEVFDEQ 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALSLSDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|327393518|dbj|BAK10940.1| tRNA 5-methylaminomethyl-2- thiouridylate-methyltransferase TrmU
           [Pantoea ananatis AJ13355]
          Length = 370

 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 49/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAADDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D    +  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADFIATGHYVRRQDSDGRSHLLRGGDGNKDQSYFLYTLSHEQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 173 ELEKPEVRRIAEELEL 188


>gi|297527115|ref|YP_003669139.1| NAD+ synthetase [Staphylothermus hellenicus DSM 12710]
 gi|297256031|gb|ADI32240.1| NAD+ synthetase [Staphylothermus hellenicus DSM 12710]
          Length = 275

 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 69/187 (36%), Gaps = 31/187 (16%)

Query: 7   ESVRFFVRSLVYPAHI---LVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E +  F+++ +  A++   ++ +SGG D S+ LL+AL +V  ++                
Sbjct: 18  EIITEFIKNKIEEANLKGAVIGLSGGVDSSVTLLLALKAVGPEKVTAMFMPDT------- 70

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------------AAAREARYALI 110
           R T K ++     +  +  I + V+   +      +M                  R  ++
Sbjct: 71  RATPKRDMEDALWLVKKYGIKYYVIRIDDIVDSYSVMPFFNINYNIPTGNLRARIRMNIL 130

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG---MGLSGMCDTILYDLNLWISR 167
             +A   N  ++ T     D+ E + +     + + G   + +  +  T +  +  ++  
Sbjct: 131 YYYANLHNYLVVGTG----DRSE-ILIGYFTKFGDGGVDILPIGSLYKTQVRKMGEYLGL 185

Query: 168 PFLRCRR 174
           P     +
Sbjct: 186 PERITSK 192


>gi|91788306|ref|YP_549258.1| GMP synthase [Polaromonas sp. JS666]
 gi|91697531|gb|ABE44360.1| GMP synthase (glutamine-hydrolyzing) [Polaromonas sp. JS666]
          Length = 539

 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 63/199 (31%), Gaps = 40/199 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR    D V 
Sbjct: 221 IRQQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLNEGDMVM 274

Query: 71  -RYVSDVCSRLRIAHSVVSWKNSKPQTGLMA--------------------AAREARYAL 109
             +V  + +R      VV    S+   G +A                     A  AR   
Sbjct: 275 DMFVGKLHAR------VVRVDASEQFLGHLAGVSEPEAKRKIIGREFVEVFKAEAARLKA 328

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
                K   A  +     + D +E+      +      +        +   L L +  P 
Sbjct: 329 GDGGHK--GAKWLAQGTIYPDVIES---GGAKSKKAVTIKSHHNVGGLPEQLGLKLLEPL 383

Query: 170 LRCRREDIRSFLLQRNISW 188
               ++++R   +   +  
Sbjct: 384 RELFKDEVRELGVALGLPH 402


>gi|319637829|ref|ZP_07992595.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102]
 gi|317400984|gb|EFV81639.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102]
          Length = 367

 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 50/200 (25%), Gaps = 48/200 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVRY 72
           PA+I+V +SGG DS      L                    H +           D   Y
Sbjct: 7   PANIIVGLSGGVDSSVTAALLKQQG----------------HQISGVFMQNWEDDDNDEY 50

Query: 73  VS----------------------DVCSRL--RIAHSVVSWKNSKPQTGLMAAA-REARY 107
            S                      +  ++    +    +   ++            E ++
Sbjct: 51  CSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKF 110

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
               ++A    A  I T H    ++        +   +       +     + L   I  
Sbjct: 111 KCFLDYAIEQGADTIATGHYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERAIF- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  + 
Sbjct: 170 PLGELEKPEVRRLAEEFKLP 189


>gi|291617068|ref|YP_003519810.1| TrmU [Pantoea ananatis LMG 20103]
 gi|291152098|gb|ADD76682.1| TrmU [Pantoea ananatis LMG 20103]
          Length = 376

 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 13  KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAADDL 62

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    V++                +  R               A +   
Sbjct: 63  ADAQAVCDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 122

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D    +  +R +    ++   L  +    +         P  
Sbjct: 123 AEDLGADFIATGHYVRRQDSDGRSHLLRGRDGNKDQSYFLYTLSHEQIAQS----LFPVG 178

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    +  +
Sbjct: 179 ELEKPEVRRIAEELEL 194


>gi|332284783|ref|YP_004416694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pusillimonas sp. T7-7]
 gi|330428736|gb|AEC20070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pusillimonas sp. T7-7]
          Length = 379

 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 54/206 (26%), Gaps = 56/206 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----- 73
              +++ +SGG DS      L     D     +K               D+  Y      
Sbjct: 16  KGRVVIGMSGGVDSSVAAWLLKEQGYDVLGLFMKNW----------EDDDDSEYCSTRQD 65

Query: 74  ----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEH 113
               + V   + +    V++                 A R          E ++    +H
Sbjct: 66  WLDAASVADLIGVDIEAVNFATEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDH 125

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD-TILYDLNLWISR----- 167
           A T+ A  I T H           R +      G     +    +  D + ++ R     
Sbjct: 126 AMTLGADYIATGHYA---------RVRSIQTPNGTQHQLLKALDLSKDQSYFLHRLNQAQ 176

Query: 168 ------PFLRCRREDIRSFLLQRNIS 187
                 P     + ++R    +  + 
Sbjct: 177 LARTLFPLGEIPKTEVRRLAQELQLP 202


>gi|148980425|ref|ZP_01816047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrionales bacterium SWAT-3]
 gi|145961228|gb|EDK26541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrionales bacterium SWAT-3]
          Length = 378

 Score = 44.9 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 32/138 (23%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------- 65
           + S      ++V +SGG DS      L           +K           E        
Sbjct: 4   ISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCT 55

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YA 108
           A +++     VC +L I    +++             A  +  R               A
Sbjct: 56  AAEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKA 115

Query: 109 LISEHAKTINATLIMTAH 126
            +    + ++A  I   H
Sbjct: 116 FLEFADEVLDADYIAMGH 133


>gi|315927736|gb|EFV07063.1| Putative tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 269

 Score = 44.9 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 27/171 (15%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86
           SGG DS      L ++  +     +K       H      ++ ++ V  V + L+I + +
Sbjct: 2   SGGVDSTVTAYKLKNLGHEVIGCYMKL------HGKPNYHEENIKKVEKVANFLQIPYHI 55

Query: 87  VSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMTAHTFDD 130
           +  +                        A   R  +   + E AK++    + T H    
Sbjct: 56  LDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYA-- 113

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +LE       +   ++    S    +   +   ++  P    ++ED++ F 
Sbjct: 114 RLEN---NLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFA 161


>gi|313681460|ref|YP_004059198.1| gmp synthase (glutamine-hydrolyzing) [Sulfuricurvum kujiense DSM
           16994]
 gi|313154320|gb|ADR32998.1| GMP synthase (glutamine-hydrolyzing) [Sulfuricurvum kujiense DSM
           16994]
          Length = 514

 Score = 44.9 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L A+SGG DS  +   L+  + D      +   + VD+  LR+  ++ V 
Sbjct: 211 IRAQVGEGKVLCALSGGVDSSVVAALLYEAIGD------QLIPVFVDNGLLRKGERESVE 264

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
            +  V   L++   V              + P+T              +E  K      +
Sbjct: 265 NIFKV--HLKVPLVVADASEIFLGKLAGVTDPETKRKIIGHTFIEVFEAEAKKHDGIKFL 322

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V +       +    + G+ D + ++    +  P     ++++R   L
Sbjct: 323 AQGTLYPDVIESVSVNGPSVTIKSHHNVGGLPDWMDFE----LIEPLRDLFKDEVRKLGL 378

Query: 183 QRNIS 187
           +  + 
Sbjct: 379 ELGLP 383


>gi|149203838|ref|ZP_01880807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. TM1035]
 gi|149142955|gb|EDM30997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseovarius sp. TM1035]
          Length = 383

 Score = 44.9 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 63/221 (28%), Gaps = 52/221 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L +   D     ++      DH             A  
Sbjct: 18  PAETRVVVAMSGGVDSSVVAAHLAAEGYDVVGVTLQLY----DHG--AALAKKGACCAGV 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V   +   H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLN 162
            A+ + A  + T H             QR    +G  L    D+             +  
Sbjct: 132 TARDLEADCMATGH-----------YIQRKMGVQGPELHSATDSARDQSYFLFSTTPEQL 180

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P      ++  R    Q  +   + P + D  F   
Sbjct: 181 EFLRFPLGHLPSKQATRELAAQYGLQVADKPDSQDICFVPN 221


>gi|332976173|gb|EGK13040.1| GMP synthase [Psychrobacter sp. 1501(2011)]
          Length = 532

 Score = 44.9 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 31/194 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +    +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 222 LKEQIGDKQVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 275

Query: 72  YVSDVCSRLRIAHSVVSWKNSKP---QTGLMAAAREARY-------ALISEHAKTIN--- 118
            V      + +   VV               +     R         + ++ A+ I+   
Sbjct: 276 QV--FAENMGVK--VVRVDAEDRFLTALAGESEPEAKRKIIGKTFIDVFADAARDISQGS 331

Query: 119 ----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +     + D +E+      + +  K          +  DL   +  P     +
Sbjct: 332 DGKPVEFLAQGTIYPDVIESAKSHQGKAHVIKS---HHNVGGLPEDLQFELVEPLRDLFK 388

Query: 175 EDIRSFLLQRNISW 188
           +++R   +   +  
Sbjct: 389 DEVRKLGIALGLPH 402


>gi|299117474|emb|CBN73977.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 491

 Score = 44.9 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 57/204 (27%), Gaps = 49/204 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAK 67
              ++V +SGG DS  + + LH               ++        A          A 
Sbjct: 35  KQRVVVGMSGGVDSSVVAMLLHQQGYEVVGVFMRNWDEQDETGSDVCA----------AD 84

Query: 68  DEVRYVSDVCSRLRIAHSVVSWK----NSKPQTGLMAAAREA---------RY----ALI 110
            ++     V   L I    V +     N   +  L    R           R+    A  
Sbjct: 85  TDLEDARRVGYHLGIPVKTVDFSREYWNEVFEPSLQELDRCRTPNMDVACNRFIKFDAFR 144

Query: 111 SEHAKTINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
                 ++A  + T H          D    V  +++    ++   LSG    +  +   
Sbjct: 145 EHALGRMSADFVATGHYARTAPGPGGDWSRPVLRQAEDGNKDQTYFLSG----VPSEGLA 200

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + ++R    +  + 
Sbjct: 201 KVLFPLGGLTKPEVRRLAEEGGLP 224


>gi|221633168|ref|YP_002522393.1| GMP synthase [Thermomicrobium roseum DSM 5159]
 gi|254800123|sp|B9L0W3|GUAA_THERP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|221156021|gb|ACM05148.1| GMP synthase (glutamine-hydrolyzing) [Thermomicrobium roseum DSM
           5159]
          Length = 527

 Score = 44.9 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 20/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  V    +L+A+SGG DS      +H  + D      + + + VD   L
Sbjct: 213 SFVEQAIREIRERVGKDRVLLALSGGVDSSVAAALIHRAIGD------QLTPVFVDTGLL 266

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           RE   + +R V       R+    +  +          S P+        E         
Sbjct: 267 REGEAETIREV--FGRHFRMPLVAIDARQRFLVRLRGVSDPEQKRRLIGEEFVRVFEEIA 324

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   +     + D +E+    + R  A+           +  DL   +  P     
Sbjct: 325 RSQGPFRFLAQGTLYPDVIESAAPGASRTAAKIKT--HHNVGGLPQDLEFELLEPLRYLF 382

Query: 174 REDIRSFLLQRNIS 187
           ++++R+      + 
Sbjct: 383 KDEVRAIGRLLGLP 396


>gi|160894878|ref|ZP_02075652.1| hypothetical protein CLOL250_02428 [Clostridium sp. L2-50]
 gi|156863309|gb|EDO56740.1| hypothetical protein CLOL250_02428 [Clostridium sp. L2-50]
          Length = 587

 Score = 44.9 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 66/207 (31%), Gaps = 47/207 (22%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R  +    +L A+SGG DS    + L   +        + + + VD   L
Sbjct: 274 SFVEDTIKSLREKIGNGKVLCALSGGVDSSVAAVLLSKAVGK------QLTCVFVDQGLL 327

Query: 63  RETAKDEVRYV---------------------SDVCSRLRIAHSVVSWKNSKPQTGLMAA 101
           R+   DEV  V                       +         VV  +  +   G    
Sbjct: 328 RKNEGDEVEAVFGPDGPYDLNFIRVNAQDRFYQKLA-------GVVEPEAKRKIIGEEFI 380

Query: 102 AREARYALISEHAKTINA-TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                  +  E AK I A   ++    + D +E+     +    +    + G+ D + + 
Sbjct: 381 ------RVFEEEAKKIGAVDFLVQGTIYPDVIESGL--GKSATIKSHHNVGGLPDYVDFK 432

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNIS 187
               I  P     ++++R    +  I 
Sbjct: 433 ---EIVEPLRLLFKDEVRKAGRELGIP 456


>gi|149179803|ref|ZP_01858308.1| possible aluminum resistance protein [Bacillus sp. SG-1]
 gi|148851995|gb|EDL66140.1| possible aluminum resistance protein [Bacillus sp. SG-1]
          Length = 220

 Score = 44.9 bits (105), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS   L     + + + F +++  A++ ++  R +   E+    ++   L 
Sbjct: 7  LVV-FSGGQDSTTCL-----IWAKKEFKEVE--AVTFNYGQRHS--FELDCAREIAEELN 56

Query: 82 IAHSVVS 88
          + H V+ 
Sbjct: 57 VRHHVLD 63


>gi|300728215|ref|ZP_07061583.1| GMP synthase [Prevotella bryantii B14]
 gi|299774450|gb|EFI71074.1| GMP synthase [Prevotella bryantii B14]
          Length = 514

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 74/198 (37%), Gaps = 33/198 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    ++  V    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 198 SFVETTVQQLKEQVGNDRVILGLSGGVDSSVCATLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALIS 111
           R   KDE + V +  +   +  +V+    S+           P+       R+      +
Sbjct: 252 R---KDEFKKVME--AYNGLGLNVIGVDASEKFFKDLEGVTDPEQKRKIIGRDFVEVFNA 306

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL--SGMCDTILYDLNLWISRPF 169
           E  K  +A  +     + D++E++        +  GM +        +  +++L +  P 
Sbjct: 307 EAKKITDAKWLAQGTIYPDRIESL--------SITGMVIKSHHNVGGLPKEMHLQLCEPL 358

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R    +  + 
Sbjct: 359 KWLFKDEVRRVGYELGMP 376


>gi|145298761|ref|YP_001141602.1| hypothetical protein ASA_1775 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|254764293|sp|A4SLT2|QUEC_AERS4 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|142851533|gb|ABO89854.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 237

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +  AI+ D+  R   ++E+     + ++ 
Sbjct: 7   VVV-FSGGQDSTTCLVQALAHYD--------EVHAITFDYGQRH--REEIETARRLATQF 55

Query: 81  RIAHSVVSWKNSKPQTGLMAAARE 104
            IA   V       +  + A  R+
Sbjct: 56  GIAAHKVMDVTLLNELAVSALTRD 79


>gi|17228854|ref|NP_485402.1| tRNA-specific 2-thiouridylase MnmA [Nostoc sp. PCC 7120]
 gi|24638319|sp|Q8YX56|MNMA_ANASP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|17130706|dbj|BAB73316.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Nostoc sp. PCC 7120]
          Length = 352

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 56/206 (27%), Gaps = 63/206 (30%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIK----FSAISVDHCLRETA 66
             ++V +SGG DS      LH+         +   +  G+        A  +        
Sbjct: 2   KKVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLMKGKGQCCSEGMIDAAYI-------- 53

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGL----MAAARE------- 104
                     C +L I H VV  ++                G+     +   +       
Sbjct: 54  ----------CEQLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPM 103

Query: 105 ARYALISEHAKTINATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
            +YA     ++ +    I T H      D+  T   +  R           + D +  DL
Sbjct: 104 VQYA-----SEKLGCDRIATGHYARIRYDEA-TGRYQLLRAVDRNKDQSYFLYD-LSQDL 156

Query: 162 NLWISRPFLRCRREDIRSFLLQRNIS 187
                 P     + D R    +  + 
Sbjct: 157 LAASLFPLGEMEKADTRRIATEHGLK 182


>gi|15803031|ref|NP_289061.1| GMP synthase [Escherichia coli O157:H7 EDL933]
 gi|12516899|gb|AAG57618.1|AE005480_5 GMP synthetase (glutamine-hydrolyzing) [Escherichia coli O157:H7
           str. EDL933]
          Length = 525

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  B   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEBVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|317154158|ref|YP_004122206.1| GMP synthase large subunit [Desulfovibrio aespoeensis Aspo-2]
 gi|316944409|gb|ADU63460.1| GMP synthase, large subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 514

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 69/193 (35%), Gaps = 20/193 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    ++  V  A +++ +SGG DS    + LH  +            I VD+  L
Sbjct: 202 SFVDTCIEDLKKQVGDAKVVLGLSGGIDSTVAAVLLHRAIGR------NLHCIFVDNGLL 255

Query: 63  RETAKDEVR-YVSDVCSRLRIAHSVVSWKNSKPQTGL---MAAAREARYALISEHAKT-- 116
           R   K+EV  ++++    L +     S +      G+       +   Y  I    +   
Sbjct: 256 RMGEKEEVVGFLAEH-FDLNVKFVDASREFLDKLVGVTDPEQKRKIIGYTFIDVFDREAK 314

Query: 117 --INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  +     + D +E+   +      +    + G+ +     ++L +  P     +
Sbjct: 315 AIEGVRFLGQGTLYPDVIESESFKGPSAVIKSHHNVGGLPEK----MHLKLVEPLRELFK 370

Query: 175 EDIRSFLLQRNIS 187
           +++R    +  + 
Sbjct: 371 DEVRRAAYELGLP 383


>gi|296124260|ref|YP_003632038.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Planctomyces limnophilus DSM 3776]
 gi|296016600|gb|ADG69839.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Planctomyces limnophilus DSM 3776]
          Length = 392

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 47/232 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISV------------DH 60
               +++A+SGG DS    + L     +        G+   SA S+             H
Sbjct: 6   SKERVVLAMSGGVDSSVAAVLLQQQGYEVIGLFMRSGEASASACSLPPSGLLPVIERKSH 65

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----TGLMAAARE----------A 105
                +  +      V   L I    +++++S  Q            R            
Sbjct: 66  KQGCCSAADAADAQRVADLLDIPFHALNFRDSFDQIKSYFADEYLKGRTPNPCVMCNVWL 125

Query: 106 RYALISEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
           ++  + E A+ + AT I T H      D+  +T  MR      ++   L G+   IL   
Sbjct: 126 KFGRLWEFAQQVGATRIATGHYARIIQDEFGQTRLMRGADLSKDQSYVLFGIRPDILSK- 184

Query: 162 NLWISRPFLRCRREDIRSFLLQRNISWCEDPSNT------DDRFERVRVRRF 207
              I  P     + +IR    Q N+     P +       D+ + R  +RR+
Sbjct: 185 ---ILFPVGHQPKAEIREIAAQANLRVAGKPDSQEICFIPDNDY-RGFLRRY 232


>gi|261379871|ref|ZP_05984444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria subflava NJ9703]
 gi|284797568|gb|EFC52915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria subflava NJ9703]
          Length = 367

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 50/200 (25%), Gaps = 48/200 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVRY 72
           PA+I+V +SGG DS      L                    H +           D   Y
Sbjct: 7   PANIIVGLSGGVDSSVTAALLKQQG----------------HQISGVFMQNWEDDDNDEY 50

Query: 73  VS----------------------DVCSRL--RIAHSVVSWKNSKPQTGLMAAA-REARY 107
            S                      +  ++    +    +   ++            E ++
Sbjct: 51  CSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDILCNAEIKF 110

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
               ++A    A  I T H    ++        +   +       +     + L   I  
Sbjct: 111 KCFLDYAIEQGADTIATGHYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERSIF- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  + 
Sbjct: 170 PLGELEKPEVRRLAEEFKLP 189


>gi|325122971|gb|ADY82494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 377

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 42/198 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--------DEVRY 72
            ++V +SGG DS      L           +K           E           +++  
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNW---------EEDDGTEYCTAMEDLAD 54

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
              V  ++ I     ++                AA R          E ++    +HA T
Sbjct: 55  AQAVADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMT 114

Query: 117 INATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  I T H    + ET        Y    R           +      ++N  +  P 
Sbjct: 115 LGADFIATGHYAR-RGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLF-PV 172

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R    + +++
Sbjct: 173 GEIEKPEVRRIAEELDLA 190


>gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254039828|gb|ACT56624.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|255957544|dbj|BAH96607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957840|dbj|BAH96814.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957850|dbj|BAH96823.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957860|dbj|BAH96832.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957870|dbj|BAH96841.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957880|dbj|BAH96850.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957890|dbj|BAH96859.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957900|dbj|BAH96868.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957910|dbj|BAH96877.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957920|dbj|BAH96886.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957930|dbj|BAH96895.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957940|dbj|BAH96904.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957950|dbj|BAH96913.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957960|dbj|BAH96922.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957970|dbj|BAH96931.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957980|dbj|BAH96940.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255957990|dbj|BAH96949.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958000|dbj|BAH96958.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958010|dbj|BAH96967.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958020|dbj|BAH96976.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958030|dbj|BAH96985.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958040|dbj|BAH96994.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958050|dbj|BAH97003.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958060|dbj|BAH97012.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958070|dbj|BAH97021.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958080|dbj|BAH97030.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958090|dbj|BAH97039.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958100|dbj|BAH97048.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958110|dbj|BAH97057.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|255958120|dbj|BAH97066.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Candidatus Liberibacter asiaticus]
 gi|283362130|dbj|BAI65917.1| predicted tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Candidatus Liberibacter asiaticus]
 gi|283362140|dbj|BAI65926.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362150|dbj|BAI65935.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362160|dbj|BAI65944.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362170|dbj|BAI65953.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362180|dbj|BAI65962.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362190|dbj|BAI65971.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362200|dbj|BAI65980.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362210|dbj|BAI65989.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362220|dbj|BAI65998.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
 gi|283362230|dbj|BAI66007.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus
           Liberibacter asiaticus]
          Length = 408

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 49/208 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--------DEVRY 72
            ++VA+SGG DS  +   L     D     ++       +  R+ +K         +V  
Sbjct: 22  RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL------YNSRKASKRKGSCCAGQDVYD 75

Query: 73  VSDVCSRLRIAHSVVSWKNS------KPQTGLMAAA----------REARYALISEHAKT 116
              VC  + ++H V  ++         P     AA           R  +++ +    + 
Sbjct: 76  ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--------- 167
           + A ++ T H        +  R       K   +      +  D + ++           
Sbjct: 136 LGADVLATGHY-------IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188

Query: 168 --PFLRCRREDIRSFLLQRNISWCEDPS 193
             P    ++E +R    +  +    D S
Sbjct: 189 RFPLGDMKKESVRDLAREMGLD-IADKS 215


>gi|153005132|ref|YP_001379457.1| hypothetical protein Anae109_2271 [Anaeromyxobacter sp. Fw109-5]
 gi|152028705|gb|ABS26473.1| conserved hypothetical protein [Anaeromyxobacter sp. Fw109-5]
          Length = 284

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 45/193 (23%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-----HCL 62
            +     +L     +LVA SGG DS  ++   H VL  R+       A++       H  
Sbjct: 16  KLARLKEALRGCGSVLVAFSGGVDSTFVVAVAHEVLGARA------VALTAHSPSVPHAE 69

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKT 116
           RE A         + +R+ + H             +  A+    Y       L  E A+ 
Sbjct: 70  REEA-------RALAARIGVRHLERESHEQDDPGYVANASDRCYYCKRELFRLCEETARA 122

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRR 174
               +++     DD                   L              +  P       +
Sbjct: 123 EGLAVVLDGFNADD-------------------LGDHRPGHRAAQERRVRSPLAEAELSK 163

Query: 175 EDIRSFLLQRNIS 187
           +++R++     + 
Sbjct: 164 DEVRAWSEAYGLP 176


>gi|39997292|ref|NP_953243.1| GMP synthase [Geobacter sulfurreducens PCA]
 gi|44887925|sp|P60500|GUAA_GEOSL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|39984182|gb|AAR35570.1| GMP synthase [Geobacter sulfurreducens PCA]
          Length = 520

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 67/194 (34%), Gaps = 25/194 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R+ V    +++ +SGG DS      +H  + D      + + + VD+  LR 
Sbjct: 209 IEDAVNRIRAQVGRERVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRL 262

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAA-----REARYALISEHAKT-- 116
              D+V   +     L +   V+     +   T L   A     R+    L  E  +   
Sbjct: 263 AEGDQVM--ATFAENLGVK--VIRVDAEQRFLTALADEADPEKKRKIIGNLFVEIFEEES 318

Query: 117 ---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                AT +     + D +E+      +      +        +   + L +  P     
Sbjct: 319 SRIEGATWLAQGTIYPDVIES---AGAKTGKAHNIKSHHNVGGLPEYMKLKLLEPLRELF 375

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 376 KDEVRAIGEELGLP 389


>gi|310821277|ref|YP_003953635.1| tRNA-specific 2-thiouridylase mnma [Stigmatella aurantiaca DW4/3-1]
 gi|309394349|gb|ADO71808.1| tRNA-specific 2-thiouridylase MnmA [Stigmatella aurantiaca DW4/3-1]
          Length = 348

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 61/189 (32%), Gaps = 29/189 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDVC 77
            ++VA+SGG DS      L           I     S +   +     + D++     V 
Sbjct: 2   RVVVAMSGGVDSSAAAALLKE--QGHEVIGITLRVWSYEGKAQCGSCCSPDDIDDARAVA 59

Query: 78  SRLRIAHSVVSWKNSKPQTGL---------------MAAA-REARYALISEHAKTINATL 121
            +L I   V + +       +                 A  R+ ++  + + A+ + A  
Sbjct: 60  QKLDIPFYVANAEEIFKDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALGAQ- 118

Query: 122 IMTAHTFDDQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           + T H    + E    V  R+     ++   L  +    L D    +  P     + ++R
Sbjct: 119 LATGHYARVEREGDRHVLRRAVDLAKDQSYFLFTLGQAELAD----VLFPVGGMTKAEVR 174

Query: 179 SFLLQRNIS 187
           +   +  + 
Sbjct: 175 AVAERHALP 183


>gi|307594357|ref|YP_003900674.1| argininosuccinate synthase [Vulcanisaeta distributa DSM 14429]
 gi|307549558|gb|ADN49623.1| argininosuccinate synthase [Vulcanisaeta distributa DSM 14429]
          Length = 410

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 59/206 (28%), Gaps = 55/206 (26%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FL P+            P+ I +A SGG D+   +  L      R     +   ++VD  
Sbjct: 9   FLKPVHR---------KPSKIALAYSGGLDTTVAIHWL------REKFNAEVITVTVDVG 53

Query: 62  LRETAKDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAA-----------------AR 103
                 D+ R + +   +   I H  +  K    +  +  A                 AR
Sbjct: 54  Q----DDDFRDIEERAYKAGAIKHYTIDAKRDFAEGPVAMAIMANALYEDRYPLGTALAR 109

Query: 104 EARYALISEHAKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
                 + E AK      I    T   +DQ+     R           L  +    ++ +
Sbjct: 110 PLIAEKVVEVAKREGCDAIAHGSTSKGNDQV-----RFNEALMALAPDLMIIEPAKIWGM 164

Query: 162 NLWISRPFLRCRREDIRSFLLQRNIS 187
           N           R +   +  +  I 
Sbjct: 165 N-----------RAEEVEYARKHGIP 179


>gi|218132958|ref|ZP_03461762.1| hypothetical protein BACPEC_00819 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991831|gb|EEC57835.1| hypothetical protein BACPEC_00819 [Bacteroides pectinophilus ATCC
           43243]
          Length = 411

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 40/208 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KD 68
           +  ++    +++A SGG D+         +   +     +   +  D C +E       +
Sbjct: 1   MEDIIMKEKVILAYSGGLDTTA------IIPWLKENFDYEVICVCAD-CGQEEELNGLDE 53

Query: 69  EVRYVSD-----------VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
             +                     +                 + AR A    + E A+  
Sbjct: 54  RAKSCGASKLYIEDLTDTFAEDYIVPCVQAHAVYEDKYLLGTSMARPAIAKRLVEIARKE 113

Query: 118 NATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A+ I    T   +DQ+        R           +     +  + W  +      RE
Sbjct: 114 GASAICHGATGKGNDQV--------RFELAIKALAPDIKIIAPWRNDKWTLK-----SRE 160

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERVR 203
           D   +  Q  I+    P + D+ + R R
Sbjct: 161 DEIEYCRQHGINL---PFSADNSYSRDR 185


>gi|206977560|ref|ZP_03238454.1| exsB protein [Bacillus cereus H3081.97]
 gi|217958916|ref|YP_002337464.1| exsB protein [Bacillus cereus AH187]
 gi|222095073|ref|YP_002529133.1| aluminum resistance protein [Bacillus cereus Q1]
 gi|254764306|sp|B7HK63|QUEC_BACC7 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764307|sp|B9IUT0|QUEC_BACCQ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|206744278|gb|EDZ55691.1| exsB protein [Bacillus cereus H3081.97]
 gi|217065877|gb|ACJ80127.1| exsB protein [Bacillus cereus AH187]
 gi|221239131|gb|ACM11841.1| possible aluminum resistance protein [Bacillus cereus Q1]
          Length = 220

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ ++  R   K E+   +++   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAMEQFA--------EVEAVTFNYNQRH--KLEIDCAAEIAKEL 55

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 56 GIKHTVLD 63


>gi|152997270|ref|YP_001342105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinomonas sp. MWYL1]
 gi|205816876|sp|A6W0E1|MNMA_MARMS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150838194|gb|ABR72170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinomonas sp. MWYL1]
          Length = 390

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 38/195 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEV 70
           +   ++V +SGG DS    + L           +K           E        AKD++
Sbjct: 29  HDKKVIVGMSGGVDSSVSALILMQQGYQVEGLFMK--------NWDEDDGTEYCTAKDDL 80

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHA 114
                V  +L I     ++ +               A R          E ++    E+A
Sbjct: 81  ADAQAVSDKLGIKLHTANFASEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYA 140

Query: 115 KTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             +NA  I T H     +   E + ++      ++   L  +    +         P   
Sbjct: 141 MALNADYIATGHYVRRGEKNGEPLLLKGLDGNKDQSYFLYAVGKDEIAKT----LFPVGE 196

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 197 LEKTEVRRLAEEFGL 211


>gi|258646059|ref|ZP_05733528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Dialister invisus DSM 15470]
 gi|260403430|gb|EEW96977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Dialister invisus DSM 15470]
          Length = 350

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +     ++VA+SGG DS      L                 +++    +    ++     
Sbjct: 1  MTEKKKVVVAMSGGVDSTLTARLLQE-------AGYDVYGATMN----QFDGQDMTEAQK 49

Query: 76 VCSRLRIAHSVVSWK 90
          +   L I H V+  +
Sbjct: 50 IADFLGIPHKVIDVR 64


>gi|226305427|ref|YP_002765385.1| GMP synthetase [Rhodococcus erythropolis PR4]
 gi|226184542|dbj|BAH32646.1| GMP synthetase [Rhodococcus erythropolis PR4]
          Length = 523

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAK--DE 69
           VR  V   H +  +SGG DS     A+ + L  R+ G  + + + VDH L R   +   E
Sbjct: 212 VREQVGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLMRAGERTQVE 265

Query: 70  VRYVSDVCSRLRIAHSVVSWK--------NSKPQTGLMAAAREARYALISEHAKTIN--- 118
             +V+   +RL    +V +           + P+T      RE   +     +  +    
Sbjct: 266 QDFVAATGARL---ITVDAADTFIGELAGVTDPETKRKIIGREFIRSFEGAVSDVLGENA 322

Query: 119 -----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   ++    + D +E+             +        +  DL   +  P     
Sbjct: 323 SHGATVDFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLQFKLVEPLRLLF 377

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 378 KDEVRAVGRELGLP 391


>gi|254492565|ref|ZP_05105737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophaga thiooxidans DMS010]
 gi|224462457|gb|EEF78734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Methylophaga thiooxydans DMS010]
          Length = 367

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 40/197 (20%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-------ISVDHCLRETAKD 68
           +     ++V +SGG DS    + L+          +K           +V     E  + 
Sbjct: 1   MAENKKVVVGLSGGVDSSVAALLLNQQHEQVEGLFMKNWVDFADESECTV-----EEDRK 55

Query: 69  EVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISE 112
           +   V++    + I     +     W            A           RE ++    +
Sbjct: 56  DAMSVAET---VGIDFHEANFAMEYWDYVFKHFLDEYRAGRTPNPDILCNREIKFKAFLD 112

Query: 113 HAKTINATLIMTAHTFDDQLET----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           HA  +   LI T H      E       ++   D  ++   L  +    L         P
Sbjct: 113 HAMELGGVLIATGHYAR-VAERDGKFHLLKGLDDKKDQSYFLYTLGQQQLSRT----LFP 167

Query: 169 FLRCRREDIRSFLLQRN 185
                + ++R    Q  
Sbjct: 168 LGELPKTEVRQIAEQAG 184


>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040091|gb|ACT56887.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 520

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++  V    ++ AVSGG DS      ++  +       I  + + VDH  
Sbjct: 216 IKEQVGNERVICAVSGGVDSTVAAFLIYEAI------GINLTCVLVDHGF 259


>gi|164506981|gb|ABY59726.1| aluminum resistance protein [Anoxybacillus gonensis]
          Length = 221

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS   L       ++         A++ D+  R   + E+   + +   L 
Sbjct: 7  VVV-FSGGQDSTTCLFWAKKHFAE-------VEAVTFDYNQRH--RLEIDVAASIAKELN 56

Query: 82 IAHSVVS 88
          + H+V+ 
Sbjct: 57 VPHTVLD 63


>gi|229529558|ref|ZP_04418948.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae 12129(1)]
 gi|229333332|gb|EEN98818.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae 12129(1)]
          Length = 231

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|66546481|ref|XP_624200.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Apis
           mellifera]
          Length = 395

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 35/136 (25%), Gaps = 42/136 (30%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------------RSFGKIKFSAISVDHCLRETAK 67
             I+V +SGG DS      L +   D               GK +               
Sbjct: 3   KKIIVGISGGIDSAVTAFLLKNKGYDVTGVFMKNWDIKNETGKCQI-------------D 49

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM--AAAREARY---------------ALI 110
           ++  +   +C +L+I    V++                E  Y                  
Sbjct: 50  EDKEHAEWICKKLKIPFVEVNFVKEYWNNIFCYLTEQYENGYTPNPDILCNKYIKFDQFF 109

Query: 111 SEHAKTINATLIMTAH 126
           +     + A  I T H
Sbjct: 110 NFARTKLQADAIATGH 125


>gi|134117071|ref|XP_772762.1| hypothetical protein CNBK1360 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255380|gb|EAL18115.1| hypothetical protein CNBK1360 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 544

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVC 77
              ++ AVSGG DS      +H  + DR      F AI VD+  LR   KDE + V  + 
Sbjct: 231 KGQVIGAVSGGVDSTVAAKLMHEAIGDR------FHAIMVDNGVLR---KDEAKKVHKML 281

Query: 78  S-RLRIAHSVVSWKN--SKPQTGLMAAAREA 105
           +  L +  +VV           G+    R+ 
Sbjct: 282 TVDLGVNLTVVDASELFLARLKGVEDPERKR 312


>gi|307700537|ref|ZP_07637571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris FB024-16]
 gi|307614258|gb|EFN93493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris FB024-16]
          Length = 394

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 52/201 (25%), Gaps = 48/201 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------- 72
             +++ +SGG DS      L     D     +K           E +  +          
Sbjct: 3   KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKL----------EESGRDEENNPTAQAL 52

Query: 73  --VSDVCSRLRIAHS-------VVSWKNSKPQTGLMAAA------------REARYALIS 111
                V + L I          V  ++       + A A            R  ++  + 
Sbjct: 53  ADARKVAAYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVV 112

Query: 112 EHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           E A       + T H        D       R +R  + +      +       L   I 
Sbjct: 113 ERALREGFDYVATGHYACLDHIGDG-----FRLRRGASLEKDQSYVLAGARAEMLAHAIF 167

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
             F    + + R+   +R + 
Sbjct: 168 PLFDVRDKAETRAEAQRRGLP 188


>gi|262274515|ref|ZP_06052326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Grimontia hollisae CIP 101886]
 gi|262221078|gb|EEY72392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Grimontia hollisae CIP 101886]
          Length = 370

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNDEYCSAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKT 116
              VC +L I    +++                 A R          E ++    E A  
Sbjct: 59  AQAVCDKLEIPLHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 117 -INATLIMTAH 126
            + A  I   H
Sbjct: 119 VLEADYIAMGH 129


>gi|239986244|ref|ZP_04706908.1| succinoglycan biosynthesis regulator [Streptomyces roseosporus
          NRRL 11379]
          Length = 223

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 23 LVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++A VSGG DS+ L   LH+          +   +S+D+  R   + E  Y      R+ 
Sbjct: 4  VIAIVSGGLDSVVLAHHLHA-------EGHEVHLLSIDYGQRH--RKEHDYARIAADRIG 54

Query: 82 IAHSVVSWKNSK 93
            H +V   N  
Sbjct: 55 AEHEIVDLSNVA 66


>gi|254994811|ref|ZP_05277001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU)
           [Anaplasma marginale str. Mississippi]
          Length = 379

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 59/233 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRYVS 74
           ++VA+SGG DS  +   LH          ++       H     +         ++    
Sbjct: 23  VVVAMSGGVDSSVVAALLHERGYKVIGATMQL------HSSSPASGAKSCCGSVDIYDAK 76

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS----------------------- 111
            V S L   H V+ ++            RE     I+                       
Sbjct: 77  RVASTLGFPHYVLDYE--------EVFRREVIDDFINSYKRGETPIPCVKCNQTVKFRDM 128

Query: 112 -EHAKTINATLIMTAHT------FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            + A+ I   ++ T H         +Q      +  R    +      +  ++  +   +
Sbjct: 129 LKAARAIGGDVVATGHYVRRVEIAGEQ------QILRGKDPQKDQSYFLF-SVTSEQLKF 181

Query: 165 ISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE-RVRVRRFVRDIDLHAL 216
           +  P     + ++R    Q N+   + P + D  F      R  +R++D  ++
Sbjct: 182 LRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234


>gi|228472050|ref|ZP_04056818.1| GMP synthase [Capnocytophaga gingivalis ATCC 33624]
 gi|228276662|gb|EEK15375.1| GMP synthase [Capnocytophaga gingivalis ATCC 33624]
          Length = 508

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE+    +R  V    +++ +SGG DS    + L+  + D      +   I V++ L
Sbjct: 197 NFIETTVAALREQVGKEKVVLGLSGGVDSTVAAVLLNRAIGD------QLHCIFVNNGL 249


>gi|254416844|ref|ZP_05030593.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microcoleus chthonoplastes PCC 7420]
 gi|196176390|gb|EDX71405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Microcoleus chthonoplastes PCC 7420]
          Length = 359

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 69/209 (33%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH------CL---------RE 64
             ++V +SGG DS                     +A ++ H       L         + 
Sbjct: 7   KKVVVGLSGGVDS-------------------SVAAATLHHQGYEVVGLTLWLMKGKGQC 47

Query: 65  TAK--DEVRYVSDVCSRLRIAHSVVSWK-----------NSKPQTGL----MAAARE-AR 106
            ++   +  +   +C +L I H +V  +            S  ++G+     +   +  +
Sbjct: 48  CSEGMVDAAF---ICEQLGIPHHIVDSREVFQANIVDYLVSGYESGITPLPCSQCNKTVK 104

Query: 107 YA-LISEHAKTINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
           +  +++   +T+    I T H          D+ +   +R+     ++   L  +   +L
Sbjct: 105 FGPMLAYARETLGIDKIATGHYARIRYDAKSDRYQ--LLRAVDSNKDQSYFLYDLSQELL 162

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                    P     +   R    +  + 
Sbjct: 163 AAS----IFPLGELEKTQTRQLAAEYQLK 187


>gi|58260564|ref|XP_567692.1| GMP synthase (glutamine-hydrolyzing) [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57229773|gb|AAW46175.1| GMP synthase (glutamine-hydrolyzing), putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 544

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVC 77
              ++ AVSGG DS      +H  + DR      F AI VD+  LR   KDE + V  + 
Sbjct: 231 KGQVIGAVSGGVDSTVAAKLMHEAIGDR------FHAIMVDNGVLR---KDEAKKVHKML 281

Query: 78  S-RLRIAHSVVSWKN--SKPQTGLMAAAREA 105
           +  L +  +VV           G+    R+ 
Sbjct: 282 TVDLGVNLTVVDASELFLARLKGVEDPERKR 312


>gi|325958014|ref|YP_004289480.1| argininosuccinate synthase [Methanobacterium sp. AL-21]
 gi|325329446|gb|ADZ08508.1| Argininosuccinate synthase [Methanobacterium sp. AL-21]
          Length = 393

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 110/348 (31%), Gaps = 63/348 (18%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S+        +L ++    ++     VD   +    DE+   + V + 
Sbjct: 3   KVVLAFSGGLDTSVC-----VKLLQEK--YNMEVVTACVDVG-QPE--DEIERPAQVANN 52

Query: 80  LRI-AHSVVSWKNSKPQTGLMAA----------------AREARYALISEHAKTINATLI 122
           + +  H  +  K+   +  +  A                AR      I E AK   A  I
Sbjct: 53  IGVKKHYTIDAKHEFAEEFIFRAIKANAMYEGYPLSTSLARPLIAMKIVELAKKEQADAI 112

Query: 123 MTAHT--FDDQ--LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
               T   +DQ   ET    + R  +         CD I    +       L   R +  
Sbjct: 113 AHGCTGKGNDQFRFET----TIRSSSV--------CDIIAPVRD-------LNLTRTEEM 153

Query: 179 SFLLQRNISWCEDPSNTDDRFERV-RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAML 237
            + ++ +I     PS+     +     R    DI    +    ++  +      NA    
Sbjct: 154 DYAVKNDIPV---PSDKLYSIDENLWGRSIEGDILEDPMVETPEEAFEWTQSTENAPDEP 210

Query: 238 IPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSG 297
               +T      +AI  +++N    +        A    G   +     +E  ++ LKS 
Sbjct: 211 QKLTVTFEEGVPVAIDGEMMNALEIIQE------ANRIAGLHGIGRVDIIEDRIIGLKSR 264

Query: 298 KRGCVSIGRVVIDRRA--NFLWITRAVRNLPTLILYPEETTVWDGRYQ 343
           +        ++I        L +TR        +       V++G + 
Sbjct: 265 ENYETPGAELLITAHKALEQLTLTREELKFGETVTQAYSELVYNGLWH 312


>gi|229515738|ref|ZP_04405197.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae TMA 21]
 gi|229347507|gb|EEO12467.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae TMA 21]
          Length = 231

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|253689372|ref|YP_003018562.1| GMP synthase, large subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259647686|sp|C6DBG3|GUAA_PECCP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|251755950|gb|ACT14026.1| GMP synthase, large subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 525

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V    +++ +SGG DS    + LH  + DR       + + VD+  LR   A   +
Sbjct: 221 IREQVGNDQVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLLRLNEADQVL 274

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
                      +    V+ ++            EA+  +I          E +K  +   
Sbjct: 275 EM---FGDHFGLNIVHVAAEDRFLGELAGENDPEAKRKIIGRVFVEVFDEEASKQTDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|91205311|ref|YP_537666.1| trans-regulatory protein ExsB [Rickettsia bellii RML369-C]
 gi|157826917|ref|YP_001495981.1| trans-regulatory protein ExsB [Rickettsia bellii OSU 85-389]
 gi|110816256|sp|Q1RJ87|QUEC_RICBR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|167016448|sp|A8GVR7|QUEC_RICB8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|91068855|gb|ABE04577.1| Trans-regulatory protein ExsB [Rickettsia bellii RML369-C]
 gi|157802221|gb|ABV78944.1| Trans-regulatory protein ExsB [Rickettsia bellii OSU 85-389]
          Length = 225

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/204 (18%), Positives = 61/204 (29%), Gaps = 49/204 (24%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA-H 84
           VSGG+DS  +L  +            +  AIS ++  R  A  E+R V+++     +  H
Sbjct: 8   VSGGADSATVLAIMRE-------QGYEIHAISFNYGQRNNA--ELRKVTELVKEYNVKQH 58

Query: 85  SVVSWKNSKPQTGLMAA------------------------ARE---ARYALISEHAKTI 117
            +V+          +                          AR      YAL    A+ I
Sbjct: 59  KIVNIDLRAFGGSALTDDDIKVPHYHDTKELPEDVPVTYVPARNTIFLSYAL--GFAEII 116

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  I       D              E       M +       + I  P +   ++ I
Sbjct: 117 GAKDIFIGVHTSDSA-----NYPDCRPEYIKSFEAMANLATNIGGVTIHTPLINMTKDQI 171

Query: 178 RSFLLQRNISW-----CEDPSNTD 196
               L+  + +     C DPS  D
Sbjct: 172 IKTGLRLGVDYKNTISCYDPSEDD 195


>gi|71897067|ref|NP_001026522.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Gallus gallus]
 gi|75571355|sp|Q5ZKW0|MTU1_CHICK RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1
 gi|53130608|emb|CAG31633.1| hypothetical protein RCJMB04_8p20 [Gallus gallus]
          Length = 424

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 57/224 (25%), Gaps = 62/224 (27%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-KFSAISVDHCLRETAKD 68
           L     +  AVSGG DS    + L            +++  + +  A SVD         
Sbjct: 2   LAAGRRVACAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDPLDEQGACSVD------RDC 55

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALIS 111
           E  Y   VC +L I    VS+             +E                      + 
Sbjct: 56  EDAY--RVCQKLDIPFHQVSYVKEYWNEVFSDLLKEYELGRTPNPDIVCNKHIKFNHFLH 113

Query: 112 EHAKTINATLIMTAHTFDDQLE-------------------------TV-YMRSQRDYAE 145
                + A  I T H     LE                         TV  ++    + +
Sbjct: 114 YAMDNLGADAIATGHYARTSLEDEEVFQQKHTKRPRELFRNRFEVRNTVKLLQGADLFKD 173

Query: 146 KGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           +   LS +    L         P     +  +R    +  +   
Sbjct: 174 QTFFLSQISQDALRKT----IFPLGDLTKSFVRKIASEHGLHHV 213


>gi|282898636|ref|ZP_06306624.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196504|gb|EFA71413.1| conserved hypothetical protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 279

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 40/195 (20%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E ++     +    H L+A SGG DS  +    H VL DR+   +  +A+       
Sbjct: 5   EKLEKLKTLFAEM---GHALIAYSGGVDSTLVAKVAHEVLGDRA---VAVTAV------S 52

Query: 64  ET-AKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKT 116
            +   +E+   +   + + I H +V  +       +          +   +  +   A  
Sbjct: 53  PSLLPEELTEATAQAATIGITHKIVHTQEMANPNYTSNPVNRCYFCKSELHDTLKPLALE 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRR 174
              + ++     DD                   L      I          P   +   +
Sbjct: 113 WGYSYVIDGVNADD-------------------LKDYRPGIQAAKERGARSPLAEIGITK 153

Query: 175 EDIRSFLLQRNISWC 189
            ++R    Q  + W 
Sbjct: 154 MEVRQLSQQLALPWW 168


>gi|326319478|ref|YP_004237150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376314|gb|ADX48583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 403

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 33/134 (24%), Gaps = 35/134 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               I+V +SGG DS      L     +     +K               D+  Y     
Sbjct: 5   PKQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNW----------EDDDDSEYCSSNV 54

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + I    V++             RE                       +
Sbjct: 55  DFVDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLD 114

Query: 113 HAKTINATLIMTAH 126
           HA  + A  I T H
Sbjct: 115 HAMRVGAEKIATGH 128


>gi|269140129|ref|YP_003296830.1| GMP synthase, large subunit [Edwardsiella tarda EIB202]
 gi|267985790|gb|ACY85619.1| GMP synthase, large subunit [Edwardsiella tarda EIB202]
 gi|304559963|gb|ADM42627.1| GMP synthase (glutamine-hydrolyzing) [Edwardsiella tarda FL6-60]
          Length = 525

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R  +    +++ +SGG DS    + LH  +  R       + + VD+  L
Sbjct: 212 TIIEDAVARMREQIGDDEVILGLSGGVDSSVTALLLHRAIGKR------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V D    R  +    V+ +          + P+       R        E
Sbjct: 266 RLN---EAEQVMDMFGDRFGLNIIHVNAEARFLSALSGIADPEVKRKTIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 323 ATKLPQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|288549932|ref|ZP_05968665.2| GMP synthase [Enterobacter cancerogenus ATCC 35316]
 gi|288317233|gb|EFC56171.1| GMP synthase [Enterobacter cancerogenus ATCC 35316]
          Length = 539

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 235 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 285

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALI-----SEHAKTINA 119
            V D       +  ++V  +  K             A R+    +       E  K  + 
Sbjct: 286 QVLDMFGDHFGL--NIVHVEGEKRFLDALAGENDPEAKRKIIGRVFVEVFDEEALKLEDV 343

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + + +  K          +  ++ + +  P     ++++R 
Sbjct: 344 KWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRK 400

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 401 IGLELGLPY 409


>gi|307825440|ref|ZP_07655659.1| GMP synthase, large subunit [Methylobacter tundripaludum SV96]
 gi|307733615|gb|EFO04473.1| GMP synthase, large subunit [Methylobacter tundripaludum SV96]
          Length = 528

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V   H+++ +SGG DS  +   LH  + D      + + + VD   LR    D+V 
Sbjct: 224 VRKTVGTDHVVLGLSGGVDSSVVAALLHKAIED------QLTCVFVDTGLLRLHEGDQVM 277

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAREARYALI-----SEHAKTINAT 120
             +     + +   V+     +     +         R+   +L       E AK  +A 
Sbjct: 278 --ATFAEHMGVK--VIRVDAEQRYLDALSGITDPEQKRKIIGSLFIDIFDEEAAKIADAK 333

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  ++ L +  P     ++++R  
Sbjct: 334 WLAQGTIYPDVIES---AGSKSGKAHLIKSHHNVGGLPENMLLKLVEPLRELFKDEVRKL 390

Query: 181 LLQRNIS 187
            ++  + 
Sbjct: 391 GVELGLP 397


>gi|298245195|ref|ZP_06969001.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Ktedonobacter racemifer DSM 44963]
 gi|297552676|gb|EFH86541.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Ktedonobacter racemifer DSM 44963]
          Length = 391

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 43/151 (28%), Gaps = 43/151 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDHCLRETAKDEVRYV-- 73
           A I+VA+SGG DS      L     +     ++       I       E   D V  V  
Sbjct: 2   ARIVVAMSGGVDSSVAAALLKEQGHEVIGMMLRLWSEPGVI-------EAEDDGVERVVQ 54

Query: 74  ------------SDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REA 105
                         V   L I   +V+ +    +                       R  
Sbjct: 55  NKCCSLESVDDARRVARMLDIPFYLVNVEQEFKERIVDSFYEDYVAGRTPNPCLTCNRHI 114

Query: 106 RYALISEHAKTINATLIMTAH--TFDDQLET 134
           R+ ++   A  + A  + T H    DD  +T
Sbjct: 115 RFTVLLNKALALEADYLATGHYVRVDDHPQT 145


>gi|302876907|ref|YP_003845540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cellulovorans 743B]
 gi|307687595|ref|ZP_07630041.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulovorans 743B]
 gi|302579764|gb|ADL53776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium cellulovorans 743B]
          Length = 373

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 61/194 (31%), Gaps = 42/194 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            +++ VSGG DS    + L +       V  +    + +    +        +  +   V
Sbjct: 9   KVVLGVSGGVDSSVAALELKNQGYDVIGVFMNNWDDEDENGVCT--------SVQDFEDV 60

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALISEHAKTI 117
             VC  + + +  V+++            A  R  R             +    + A T+
Sbjct: 61  RKVCDSISVPYYSVNFQKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDFALTV 120

Query: 118 NATLIMTAHTFDDQL-----ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  I   H    Q+     E   +R+  +  ++   L  +    L         P    
Sbjct: 121 GADYIAMGHYA--QVDFRDGEYKLLRAADENKDQTYFLCKLNQYQLSKSMF----PIGHL 174

Query: 173 RREDIRSFLLQRNI 186
           R+ ++R    + N+
Sbjct: 175 RKPEVREKAREANL 188


>gi|198274479|ref|ZP_03207011.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135]
 gi|198272681|gb|EDY96950.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135]
          Length = 349

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 56/187 (29%), Gaps = 36/187 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY---VSDVC 77
            +L+ +SGG+DS    + L     + +    +F                + Y     D+C
Sbjct: 6   KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFY----------EKDGNIEYLDDARDLC 55

Query: 78  SRLRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATL 121
             L I H +   +    +  +        A R            ++ L+ + A       
Sbjct: 56  RTLGIPHLIYDAREMFQEKIIRYFIQEYMAGRTPVPCTLCNNYLKWPLLQQVADEKGIYH 115

Query: 122 IMTAHTFDDQLETVYMRSQRDY---AEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           + T H  + Q    Y           ++   L G+  +IL  +      P     +  +R
Sbjct: 116 LATGHYVNKQKIDGYWYITCGNDADKDQSFFLWGLPQSILERM----CLPMGGLTKTRVR 171

Query: 179 SFLLQRN 185
                R 
Sbjct: 172 EIAAARG 178


>gi|148926245|ref|ZP_01809930.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205356267|ref|ZP_03223033.1| GMP synthase (glutamine hydrolyzing) [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|145845416|gb|EDK22509.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|205345872|gb|EDZ32509.1| GMP synthase (glutamine hydrolyzing) [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 511

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 23/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGNDKVLCAVSGGVDSSVVAALLASAIKE------QVIVVFVDNGLLRSGEKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           ++    + L I    +             + P+                E  K  +   +
Sbjct: 263 FMFK--NTLGIDLISIDASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYL 320

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+  + + +               +   +NL +  P     ++++R+  L
Sbjct: 321 AQGTLYTDIIESSVVGASKTIKS-----HHNVGGLPEKMNLKLIEPLKEIFKDEVRALGL 375

Query: 183 QRNIS 187
           +  +S
Sbjct: 376 ELGLS 380


>gi|302337414|ref|YP_003802620.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634599|gb|ADK80026.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 360

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 60/199 (30%), Gaps = 46/199 (23%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVC 77
           +++A+SGG DS      L    S R FG          H +++ +       +     +C
Sbjct: 9   VVIALSGGVDSSVAAWMLSR-QSGRIFGAT--------HYIQDDSPCCNTKTIYRARVIC 59

Query: 78  SRLRIAHSVV----SWKNSKPQTGLMAAARE----------------------ARYALIS 111
             L I + ++    S++ S     +    R                        R  +  
Sbjct: 60  RDLGIPYRLLDMRSSFRQSVVDPFVETYRRAETPNPCVRCNERLRFGDFYHQVRRLLVEE 119

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMR---SQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
              +      I T H       T  +      R   +     S M   I  D+  ++  P
Sbjct: 120 GALRETERPRIATGH----YARTAVVDGVSYIRKGVDPSKDQSYMLYRIPRDVLPYVCFP 175

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++    L+ N+ 
Sbjct: 176 LGEYTKKEVVEIALRENLP 194


>gi|281425182|ref|ZP_06256095.1| ExsB protein [Prevotella oris F0302]
 gi|281400648|gb|EFB31479.1| ExsB protein [Prevotella oris F0302]
          Length = 217

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 39/188 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +I    IS D+        E+ +    C RL I H 
Sbjct: 8   VSGGMDSITLLY--------DKKDEIALG-ISFDYG-SNHNAKEIPFAEMHCRRLGIKHI 57

Query: 86  VVSWKNSKP--QTGLMAAAR---EARYA------------------LISEHAKTINATLI 122
            ++        ++ L+  A    E  YA                  +    A++ N   +
Sbjct: 58  TINLDFMHRYFKSSLLEGAEAIPEGHYADENMKSTVVPFRNGIMLSIAIGIAESNNLKKV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + A+   D          R    K +  +    T +   N  +  P+    + DI     
Sbjct: 118 LIANHGGDHT---IYPDCRPEFIKAIDAAAYAGTFV---NAHVEAPYTNITKGDIARIGK 171

Query: 183 QRNISWCE 190
           Q  + + E
Sbjct: 172 QLGLDYTE 179


>gi|262306031|gb|ACY45608.1| gln amidotransferase [Daphnia magna]
          Length = 193

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 12  FVRSLVYPAHILVA-VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE 69
           ++R  V    I++  VSGG DS      LH  L        +  AI +D+  LR   KDE
Sbjct: 36  YIRRTVGRDKIVLMLVSGGVDSAVCAALLHKALLQ-GDDSSRVQAIHIDNGFLR---KDE 91

Query: 70  VRYVSDVCSRLRIAHSVVS 88
              V     +L +   VV 
Sbjct: 92  SEQVVTSLQQLGLNLRVVK 110


>gi|254506120|ref|ZP_05118264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus 16]
 gi|219550938|gb|EED27919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus 16]
          Length = 374

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 119 VLDADYIAMGH 129


>gi|159905824|ref|YP_001549486.1| PP-loop domain-containing protein [Methanococcus maripaludis C6]
 gi|159887317|gb|ABX02254.1| PP-loop domain protein [Methanococcus maripaludis C6]
          Length = 296

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 32/190 (16%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLR-ETAKDEVRYVS 74
           +    I+V +SGG DS   L     +        +     +   H    + + +E     
Sbjct: 36  LKDEKIIVMLSGGKDSAVALAIAKDL-------GLNVHLCVHFVHKWSWDISTNEA---K 85

Query: 75  DVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            +  +  +          +           +    +    A + + AK  N  +IMT  T
Sbjct: 86  KLADKFNVPIIFPDITEELAKKTQDAKGKSICRICKTIMKARMIDIAKEENVRIIMTGET 145

Query: 128 FDDQLETV---YMRSQRDYAEK-------GMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               LE +     +  R+   K        +        +     +   RP +R    D+
Sbjct: 146 A---LEKIAGPVFQYIRENNSKVKRKDEFELYKKMELTKVPKRYKIHFFRPLIRVGHFDV 202

Query: 178 RSFLLQRNIS 187
            + L   N+ 
Sbjct: 203 FNLLKHYNLD 212


>gi|78211601|ref|YP_380380.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. CC9605]
 gi|123579036|sp|Q3ANK7|GUAA_SYNSC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78196060|gb|ABB33825.1| GMP synthase [Synechococcus sp. CC9605]
          Length = 528

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           I+     VR  V    +L+A+SGG DS  L   L   + D+
Sbjct: 211 IDEAVALVREQVGDKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|16082344|ref|NP_394817.1| GMP synthase subunit B [Thermoplasma acidophilum DSM 1728]
 gi|13626894|sp|Q9HIH8|GUAAB_THEAC RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|10640704|emb|CAC12482.1| probable GMP synthase [Thermoplasma acidophilum]
          Length = 310

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 25/192 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S I+ ++  +   V    I +AVSGG DS  L +    VL DR         + VD  L 
Sbjct: 5   SYIDQIKNEISEKVKGRAI-IAVSGGQDSSLLSVLASQVLGDR------LLCVFVDTGLI 57

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAR---EARYALISEHA 114
           R     EV  V        + + +V       +  K  T      +   +    +++E A
Sbjct: 58  RIG---EVDRVRKFFEEHAMNYRIVDASKRFLEALKGITDPEEKRKIIGKMFIDVLNEEA 114

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +A  ++      D +E              +        +  ++ L +  P     +
Sbjct: 115 ENFHAEYLLQGTIAPDWIE------SGGQKRDTIKSHHNVGGLPKEMKLKLVEPLRDFYK 168

Query: 175 EDIRSFLLQRNI 186
           ++IR+   +  +
Sbjct: 169 DEIRAMSRELGL 180


>gi|99081887|ref|YP_614041.1| ExsB [Ruegeria sp. TM1040]
 gi|118574293|sp|Q1GEY7|QUEC_SILST RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|99038167|gb|ABF64779.1| ExsB [Ruegeria sp. TM1040]
          Length = 233

 Score = 44.5 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 51/189 (26%), Gaps = 38/189 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKF-SAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
            SGG DS+ L              K +    +S D+  R   + E+ +     +RL +  
Sbjct: 7   CSGGLDSVSLAHITSQ--------KYQLTRLVSFDYGQRH--RKELDFARAAATRLGVPF 56

Query: 85  SVVSWKNSKPQTGLMA------------AAREAR-----------YALISEHAKTINATL 121
            ++  ++        A            A    R            A+    A       
Sbjct: 57  HLIDMRSIGGALSGSALTDDIDVPDGHYAEDTMRITVVPNRNAIMLAIGFGVAAAQGDEA 116

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           + TA    D          R    +            Y  ++ +  PF+   + DI    
Sbjct: 117 VATAVHGGDH---FIYPDCRPGFTRAFETMQRAALDGYA-DVRLHTPFVEQSKADIVRAG 172

Query: 182 LQRNISWCE 190
              N  + E
Sbjct: 173 AAHNTPFAE 181


>gi|327280520|ref|XP_003225000.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Anolis
           carolinensis]
          Length = 207

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           H  DD  ETV M   R    +    + +      +  L   +P      ++I  +   + 
Sbjct: 21  HNADDVAETVLMNFLRGDVGRLRRCTEI--MTGSEGALPRCKPLKHAYEKEIVLYAYFQG 78

Query: 186 ISWCEDPSNTDDRFERVRVRRFVRDID 212
           + +            R   R  ++D++
Sbjct: 79  LDYFSTECVYSPNAYRGHARTLLKDLE 105


>gi|188994962|ref|YP_001929214.1| probable succinoglycan biosynthesis regulator ExsB protein
           [Porphyromonas gingivalis ATCC 33277]
 gi|254764365|sp|B2RJS2|QUEC_PORG3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|188594642|dbj|BAG33617.1| probable succinoglycan biosynthesis regulator ExsB protein
           [Porphyromonas gingivalis ATCC 33277]
          Length = 220

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 39/188 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ L+         R+   +   A+S D+   +    E+ +      RL + H 
Sbjct: 11  VSGGMDSVTLMY------EKRASIAL---ALSFDYG-SKHNARELSFARLHAERLGVEHL 60

Query: 86  VVSWK--NSKPQTGLMAAAR---EARY------------------ALISEHAKTINATLI 122
           ++         Q+ L+ +     E RY                  A+ +  A++     I
Sbjct: 61  IIPLDFIGQYFQSDLLLSGGDIPEGRYDEENMKSTVVPFRNGIMLAVAAGLAESRGLRRI 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             A+ F D          R    + M  +  C T      + I  P+    + DI     
Sbjct: 121 YIANHFGDHA---IYPDCRASFIRPMTEAVRCGTT---NGVLIEAPYTDITKTDIARIGA 174

Query: 183 QRNISWCE 190
              I + E
Sbjct: 175 SLGIDYAE 182


>gi|194476611|ref|YP_002048790.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Paulinella chromatophora]
 gi|171191618|gb|ACB42580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Paulinella chromatophora]
          Length = 434

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 43/208 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-----SVDHCLRETAK 67
           +++      I V +SGG DS   L A   V +      +    +          L     
Sbjct: 38  LKNAPNKQKIAVGLSGGVDSS--LAAALLVKAGWQVEGLTLWLMSGKGTCCSEGL----- 90

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQT-------GLMAAA---------REARYALIS 111
             +  V  +C +L I H +V  +    +        G  +           RE ++ L+ 
Sbjct: 91  --LDAVG-ICEQLNIPHHIVDSREHFQKQIVAFLLRGYESGVTPLPCSRCNREVKFPLML 147

Query: 112 EHA-KTINATLIMTAHTF---DDQLETVY----MRSQRDYAEKGMGLSGMCDTILYDLNL 163
             A +      I T H     D + E       +   R    +G+         LYDL+ 
Sbjct: 148 GWAERERGIRKIATGHYARIVDKEDELNLDIPGLSKGRYKLLRGVDYQKDQSYFLYDLSQ 207

Query: 164 WISR----PFLRCRREDIRSFLLQRNIS 187
            I      P     + + R    + N++
Sbjct: 208 EILSSLIFPLGELTKVETRLEAKRYNLN 235


>gi|124021760|ref|YP_001016067.1| GMP synthase [Prochlorococcus marinus str. MIT 9303]
 gi|226739662|sp|A2C5P2|GUAA_PROM3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123962046|gb|ABM76802.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 528

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           IE     VRS V    +L+A+SGG DS  L   L   + D+
Sbjct: 211 IEEAVSQVRSQVGDKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|29349296|ref|NP_812799.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29341204|gb|AAO78993.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 351

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 51/186 (27%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86
           SGG DS    + L           +                DE +   ++ +R+ I H V
Sbjct: 2   SGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAARMGIEHYV 49

Query: 87  VSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIMTAHTFDD 130
              +    +T     +   ++ R             + +++E A  ++   I T H    
Sbjct: 50  ADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDCAYIATGH---- 105

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFLRCRREDIRS 179
                     R     G       D    D + ++ R           P     +  +R 
Sbjct: 106 --------YSRLEERSGHIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDYTKIKVRE 157

Query: 180 FLLQRN 185
           +L ++ 
Sbjct: 158 YLAEKG 163


>gi|159902578|ref|YP_001549922.1| GMP synthase [Prochlorococcus marinus str. MIT 9211]
 gi|159887754|gb|ABX07968.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 548

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           + I+     VRS V    +L+A+SGG DS  L   L   + D+
Sbjct: 229 TFIDEAISTVRSQVGDKKVLLALSGGVDSSTLAFLLKRAIGDQ 271


>gi|241764268|ref|ZP_04762299.1| GMP synthase, large subunit [Acidovorax delafieldii 2AN]
 gi|241366391|gb|EER60913.1| GMP synthase, large subunit [Acidovorax delafieldii 2AN]
          Length = 539

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I      +R+ V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 210 MRDHIAEAVEQIRAQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 263

Query: 62  L 62
           L
Sbjct: 264 L 264


>gi|205822073|sp|A7NK07|MNMA_ROSCS RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 36/134 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------- 72
           A I++A+SGG DS      LH    D        + +++   L E   D +         
Sbjct: 2   AKIMIAMSGGVDSSLAAALLHEAGHD-------VTGVTLH--LWEGDDDRLAESLCCSQE 52

Query: 73  ----VSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALISE 112
                  VC++L I + V +++    ++ +                    RE ++  +  
Sbjct: 53  MTESARRVCAQLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLECNREIKFRALLA 112

Query: 113 HAKTINATLIMTAH 126
            A+ +    + T H
Sbjct: 113 RARALGFDYVATGH 126


>gi|332978445|gb|EGK15160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter sp. 1501(2011)]
          Length = 406

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 56/202 (27%), Gaps = 46/202 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS    + L           +K           E        A +++   
Sbjct: 29  RVVVGMSGGVDSSVSAVLLQKAGFQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 80

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT- 116
             VC +L I     ++                 A R          E ++    ++A   
Sbjct: 81  QAVCDKLGITLHTANFAMEYWDRVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASDP 140

Query: 117 ---INATLIMTAH--------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
              + A  I T H        T +D  E    R  R           +       +   +
Sbjct: 141 KFGLGADYIATGHYTRRSINYTREDGTE--VARLLRGLDNNKDQSYFLHAVGGDKIAKTL 198

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     + ++R    + +++
Sbjct: 199 F-PVGELEKPEVRKIAEEHDLA 219


>gi|113461819|ref|YP_719888.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 129PT]
 gi|123327501|sp|Q0I5Y6|MNMA_HAES1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|112823862|gb|ABI25951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus somnus 129PT]
          Length = 383

 Score = 44.5 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 48/198 (24%), Gaps = 43/198 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++  +SGG DS      L           +K               D+  Y     
Sbjct: 22  SKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAN 71

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALIS 111
                  VC +L I    +++              E +                  A + 
Sbjct: 72  DLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLE 131

Query: 112 EHAKTINATLIMTAH--TFDD-QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
              + + A  I T H     D   +T  +R      ++   L  +    +         P
Sbjct: 132 YAVEDLGADYIATGHYVRRSDVNGQTKLLRGLDSNKDQSYFLYTLSKDQVAQS----LFP 187

Query: 169 FLRCRREDIRSFLLQRNI 186
                +  +R+      +
Sbjct: 188 VGEIEKPIVRAIAEDLGL 205


>gi|283850323|ref|ZP_06367612.1| GMP synthase, large subunit [Desulfovibrio sp. FW1012B]
 gi|283574349|gb|EFC22320.1| GMP synthase, large subunit [Desulfovibrio sp. FW1012B]
          Length = 516

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 24/195 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    ++  V    ++ A+SGG DS  + + LH  +        K   I VD+  L
Sbjct: 204 SFVETELAALKEKVGDDEVVCALSGGVDSTVVAVMLHKAIGK------KLHCIFVDNGLL 257

Query: 63  R-ETAKDEVRYVSDV---------CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE 112
           R    ++   Y+ +           S+L +          + +  +  +  E       E
Sbjct: 258 RLGEGEEVAAYLREHFDLNLHYINASKLFLDRLAGVTDPEQKRKIIGTSFIEV---FEVE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            AK      +     + D +E+V  +      +    + G+ D     + L +  P    
Sbjct: 315 AAKLPKVKYLAQGTLYPDVIESVSFKGPSAVIKSHHNVGGLPDV----MKLELIEPLREL 370

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   ++  + 
Sbjct: 371 FKDEVRKVAVELGMP 385


>gi|225567860|ref|ZP_03776885.1| hypothetical protein CLOHYLEM_03933 [Clostridium hylemonae DSM
           15053]
 gi|225163338|gb|EEG75957.1| hypothetical protein CLOHYLEM_03933 [Clostridium hylemonae DSM
           15053]
          Length = 406

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 57/207 (27%), Gaps = 49/207 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--DE------- 69
              +++A SGG D+         +   +     +     VD    E     +E       
Sbjct: 2   KEKVVLAYSGGLDTTA------IIPWLKENFDYEVICCCVDCGQGEELDGLEERAKLSGA 55

Query: 70  -----VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                   V D C    +                 + AR A    + E A+   AT I  
Sbjct: 56  SKLYIEDIVDDFCDNYVVPCVQAHAVYENKYLLGTSMARPAIAKKLVEIARKEGATAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC------RRED 176
             T   +DQ+               +G+  +        ++ I  P+          RED
Sbjct: 116 GATGKGNDQI------------RFELGIKALAP------DIKIIAPWRMTDVWTMDSRED 157

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVR 203
              +  Q  I    D S     + R R
Sbjct: 158 EIEYCRQHGIDLPFDAS---QSYSRDR 181


>gi|210620566|ref|ZP_03292114.1| hypothetical protein CLOHIR_00057 [Clostridium hiranonis DSM 13275]
 gi|210155280|gb|EEA86286.1| hypothetical protein CLOHIR_00057 [Clostridium hiranonis DSM 13275]
          Length = 512

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V     L  +SGG DS    + +H  + D        + + VDH  LR+   D+V 
Sbjct: 209 IKEKVGDRKALCGLSGGVDSSVAAVLMHRAIGD------NLTCVFVDHGLLRKDEGDDVE 262


>gi|126651677|ref|ZP_01723880.1| possible aluminum resistance protein [Bacillus sp. B14905]
 gi|126591626|gb|EAZ85732.1| possible aluminum resistance protein [Bacillus sp. B14905]
          Length = 219

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I+V  SGG DS   L       ++         A++ D+  R   + E+     +   L 
Sbjct: 7  IVV-FSGGQDSTTCLFWAKERFAE-------IEAVTFDYGQRH--RLEIDCAKLIAEELG 56

Query: 82 IAHSVVS 88
          I H ++ 
Sbjct: 57 IKHHILD 63


>gi|319652976|ref|ZP_08007081.1| aluminum resistance protein [Bacillus sp. 2_A_57_CT2]
 gi|317395325|gb|EFV76058.1| aluminum resistance protein [Bacillus sp. 2_A_57_CT2]
          Length = 219

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS   L        +         A++ ++  R   K E+     +   L 
Sbjct: 7  LVV-FSGGQDSTTCLFWAKERFEE-------VEAVTFNYNQRH--KLEIECAQQIAKELG 56

Query: 82 IAHSVVS 88
          I H ++ 
Sbjct: 57 IRHHILD 63


>gi|300310029|ref|YP_003774121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herbaspirillum seropedicae SmR1]
 gi|300072814|gb|ADJ62213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Herbaspirillum seropedicae SmR1]
          Length = 368

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 53/199 (26%), Gaps = 43/199 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS--- 74
               +++ +SGG DS      L     +     +K               D+  Y S   
Sbjct: 2   SKKRVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNW----------EDDDDSEYCSTRE 51

Query: 75  ------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                  V   + +    V++ +           RE +                     +
Sbjct: 52  DWIDAVSVADVVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           HA  + A LI T H        Q +   +++     ++   L  +    L         P
Sbjct: 112 HAMKLGADLIATGHYARVRQGPQGDFQLLKALDASKDQSYFLHRLNQEQLSRT----VFP 167

Query: 169 FLRCRREDIRSFLLQRNIS 187
                + ++R    Q  + 
Sbjct: 168 LGEIHKTEVRRIAEQLQLP 186


>gi|326201017|ref|ZP_08190889.1| asparagine synthase [Clostridium papyrosolvens DSM 2782]
 gi|325988585|gb|EGD49409.1| asparagine synthase [Clostridium papyrosolvens DSM 2782]
          Length = 306

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 11/71 (15%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          LV  SGG DS  L   +  V   R          +VD      + ++      V  +L +
Sbjct: 23 LVLFSGGKDSTYLAHLIKQVKGQR------VCLFTVD-----NSFEDDAQAKKVADQLNL 71

Query: 83 AHSVVSWKNSK 93
             +   K   
Sbjct: 72 DLFIYKPKVRD 82


>gi|209695634|ref|YP_002263563.1| tRNA-specific 2-thiouridylase MnmA [Aliivibrio salmonicida LFI1238]
 gi|208009586|emb|CAQ79882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Aliivibrio salmonicida LFI1238]
          Length = 374

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 53/198 (26%), Gaps = 40/198 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++                +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH-------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            ++A  I   H       T +D       +  R           +  T+  +       P
Sbjct: 119 VLDADFIAMGHYVRRTFPTAEDIANGAKPQMLRGLDSNKDQSYFLY-TLSSEQVARSLFP 177

Query: 169 FLRCRREDIRSFLLQRNI 186
                + ++R    ++++
Sbjct: 178 VGDLEKPEVRRIAQEQDL 195


>gi|83309831|ref|YP_420095.1| GMP synthase [Magnetospirillum magneticum AMB-1]
 gi|82944672|dbj|BAE49536.1| GMP synthase [Magnetospirillum magneticum AMB-1]
          Length = 518

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           VR+ V    ++  +SGG DS  +   LH  + D      + + + VD    R    ++V 
Sbjct: 213 VRAQVGSGRVICGLSGGVDSSVVAALLHEAIGD------QLTCVFVDTGFMRAGESEQVV 266

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V     R  I                  + P+                E      A  +
Sbjct: 267 SVFR--DRFNIKLVHKDASGLFLDKLASLTDPEKKRKIIGATFIDVFEEEAKAVGGADFL 324

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   +N+ +  P     ++++R+   
Sbjct: 325 AQGTLYPDVIESV---SFTGGPSVTIKSHHNVGGLPERMNMKLVEPLRELFKDEVRALGR 381

Query: 183 QRNIS 187
           +  + 
Sbjct: 382 ELGLP 386


>gi|312886176|ref|ZP_07745792.1| Argininosuccinate synthase [Mucilaginibacter paludis DSM 18603]
 gi|311301331|gb|EFQ78384.1| Argininosuccinate synthase [Mucilaginibacter paludis DSM 18603]
          Length = 395

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 69/193 (35%), Gaps = 52/193 (26%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              +++A SGG D S   +     +        ++  ++ V+      +++E++ V    
Sbjct: 2   KKKVVLAYSGGLDTSFCCIYLTRDL-------DMEVHSVIVNTG--GFSEEELQAVEKRA 52

Query: 78  SRLRI-AHSVVSWKNSKPQTGLM-----------------AAAREARYALISEHAKTINA 119
             + + +H VV    +   T +                  +A R ++   I+ +AK INA
Sbjct: 53  YEMGVTSHHVVDETINFYNTCIRYLVYGNVLKNNTYPLSVSAERVSQATAIANYAKEINA 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRR 174
             +  AH                    G G   +   +++++    + I  P   L+  R
Sbjct: 113 EYV--AH-----------------GSTGAGNDQVRFDMIFNILVPEVQILTPIRDLKLSR 153

Query: 175 EDIRSFLLQRNIS 187
           E+   +L +  + 
Sbjct: 154 EEEIKYLKEHGVE 166


>gi|150400611|ref|YP_001324377.1| GMP synthase subunit B [Methanococcus aeolicus Nankai-3]
 gi|150013314|gb|ABR55765.1| GMP synthase, large subunit [Methanococcus aeolicus Nankai-3]
          Length = 310

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 30/194 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE     ++  +     ++A+SGG DS     A+ +VL+ R+ G  +  A+ VD  L 
Sbjct: 6   EFIEESIAEIKEQIGDKKTIIALSGGVDS-----AVAAVLTARAIGD-QLLAVFVDTGLM 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           R+    E+  +      + +   ++  K            P+       R     +  E 
Sbjct: 60  RKNEAQEIYKIFK--EDMGLNLRIIEAKEQFLKELDGVDDPEEKRKIIGRIF-IEIFEEV 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK     +++      D +E+           +G   +     +   + L +  P     
Sbjct: 117 AKENGEEVLVQGTIAPDWIES-----------EGEIKTHHNIALPSGMVLELVEPLRDLY 165

Query: 174 REDIRSFLLQRNIS 187
           ++++R       + 
Sbjct: 166 KDEVRLLAKDLGLP 179


>gi|134045404|ref|YP_001096890.1| PP-loop domain-containing protein [Methanococcus maripaludis C5]
 gi|132663029|gb|ABO34675.1| PP-loop domain protein [Methanococcus maripaludis C5]
          Length = 296

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 19/131 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLR-E 64
           + +  F    +    I+V +SGG DS   L     +        +     +   H    +
Sbjct: 26  DILNNFEDLKLKDEKIIVMLSGGKDSAVSLAVAKEL-------GLNVHLCVHFVHKWSWD 78

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTI 117
            + +E      +  R  I     +                +    +    A + + AK  
Sbjct: 79  ISTNEA---KKLADRFNIPIIFPNVTEELAKKTQGAKGKSICRICKTIMKARMIDIAKEE 135

Query: 118 NATLIMTAHTF 128
           NA +IMT  T 
Sbjct: 136 NAKIIMTGETA 146


>gi|311278572|ref|YP_003940803.1| GMP synthase, large subunit [Enterobacter cloacae SCF1]
 gi|308747767|gb|ADO47519.1| GMP synthase, large subunit [Enterobacter cloacae SCF1]
          Length = 525

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 221 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALI-----SEHAKTINA 119
            V D       +  ++V  +  K             A R+    +       E  K  + 
Sbjct: 272 QVMDMFGDHFGL--NIVHVEGEKRFLDALAGENDPEAKRKIIGRVFVEVFDEEALKLEDV 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + + +  K          +  ++ + +  P     ++++R 
Sbjct: 330 KWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRK 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 IGLELGLPY 395


>gi|304313061|ref|YP_003812659.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [gamma proteobacterium HdN1]
 gi|301798794|emb|CBL47027.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [gamma proteobacterium HdN1]
          Length = 387

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 36/136 (26%), Gaps = 35/136 (25%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           + +P  ++V +SGG DS      L     +     +K               D   Y   
Sbjct: 1   MSHPKKVIVGMSGGVDSSVAAWLLLQEGYEVEGLFMKNW----------EEDDGTEYCTA 50

Query: 74  -------SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALI 110
                    V   L I     ++                   R          E ++   
Sbjct: 51  LTDLADAQQVADTLGIRLHTANFAAEYWDRVFEYFLAEYKGGRTPNPDILCNKEIKFRAF 110

Query: 111 SEHAKTINATLIMTAH 126
            ++A T+ A  I T H
Sbjct: 111 LDYALTLGADAIATGH 126


>gi|170288087|ref|YP_001738325.1| NAD+ synthetase [Thermotoga sp. RQ2]
 gi|170175590|gb|ACB08642.1| NAD+ synthetase [Thermotoga sp. RQ2]
          Length = 281

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 9/77 (11%)

Query: 23 LVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +V VSGG DS  +L     ++  DR FG I           R+++KD V+   ++C  L+
Sbjct: 22 VVGVSGGIDSAVVLSLCVQALGKDRVFGLILPE--------RDSSKDSVKDAVELCESLK 73

Query: 82 IAHSVVSWKNSKPQTGL 98
          + + +        + G+
Sbjct: 74 VEYKIKPITPILRKIGV 90


>gi|154250791|ref|YP_001411615.1| ExsB family protein [Parvibaculum lavamentivorans DS-1]
 gi|154154741|gb|ABS61958.1| ExsB family protein [Parvibaculum lavamentivorans DS-1]
          Length = 197

 Score = 44.5 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  L           +   I    +++D+  ++ A  E      +CS L + H 
Sbjct: 6   LSGGIDSSALAH--------WTRPDI---CVTLDYG-QQAALGEAAASRAICSELHLEHK 53

Query: 86  VVSWKNSKPQTGLMAAAREA 105
           ++S   S   +G MA    A
Sbjct: 54  LISVDLSSLGSGSMAGRETA 73


>gi|330506698|ref|YP_004383126.1| GMP synthase subunit B [Methanosaeta concilii GP-6]
 gi|328927506|gb|AEB67308.1| GMP synthase, subunit B [Methanosaeta concilii GP-6]
          Length = 302

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 58/184 (31%), Gaps = 39/184 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEVRYVSDV 76
               ++ +SGG DS    +  H  L DR         + VD  L  +  +      + ++
Sbjct: 19  KGRAIIGLSGGVDSSVCAMLAHRALGDR------LVPVYVDSGLMRQSESDR----IEEL 68

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAA-----AREARY-------ALISEHAKTINATLIMT 124
              L +       + +     L A        E R         +  E A+ I    ++ 
Sbjct: 69  FKDLGL------VRVNAQDRFLEALKGVVDPEEKRMVVGETFIRVFEEEARRIGGDCLIQ 122

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
              + D++E           +    + G+   I +     I  P     ++++R      
Sbjct: 123 GTIYPDRIE------SDGGIKAHHNVGGLPSRIEFKN---IVEPLRDLYKDEVRQVARAL 173

Query: 185 NISW 188
           ++S 
Sbjct: 174 SLSP 177


>gi|320156524|ref|YP_004188903.1| queuosine Biosynthesis QueC ATPase [Vibrio vulnificus MO6-24/O]
 gi|319931836|gb|ADV86700.1| queuosine Biosynthesis QueC ATPase [Vibrio vulnificus MO6-24/O]
          Length = 231

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL+           +  AI+ D+  R   + E+    ++   L
Sbjct: 5  VVV-FSGGQDSTTCLVKALNEFD--------EVHAITFDYGQRH--RLEIEVAQNLAKEL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 GVAAHKV 60


>gi|301774935|ref|XP_002922890.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like
           [Ailuropoda melanoleuca]
          Length = 477

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 30/130 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYV 73
            H++VA+SGG DS    + L            +++  +    + +       A  +    
Sbjct: 63  RHVVVALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCI-------ADRDCEDA 115

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARY--------------ALISEHAKT 116
             VC  L I    VS+         +  ++   + R                        
Sbjct: 116 YRVCQILDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDN 175

Query: 117 INATLIMTAH 126
           + A  + T H
Sbjct: 176 LGADAVATGH 185


>gi|268316244|ref|YP_003289963.1| GMP synthase, large subunit [Rhodothermus marinus DSM 4252]
 gi|262333778|gb|ACY47575.1| GMP synthase, large subunit [Rhodothermus marinus DSM 4252]
          Length = 522

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 27/199 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     VR  V   H+++ +SGG DS    + LH  L DR       + I VD+  L
Sbjct: 205 SFIEEKIAEVRERVGDEHVILGLSGGVDSSVAAVLLHRALGDR------LTCIFVDNGLL 258

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS------------WKNSKPQTGLMAAAREARYALI 110
           R+      + V+       I    V                 + +  + A   E      
Sbjct: 259 RKGEA--AQVVATFRDHFHIRLKAVDAGALFLSRLEGVVDPEQKRKIIGATFIEVFEQAT 316

Query: 111 SEHAKTIN--ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            E  + +      +     + D +E+V  R      +    + G+ + +    N  I  P
Sbjct: 317 EELTRELGRRPRFLAQGTLYPDVIESVSFRGPSATIKTHHNVGGLPEKL----NFEIIEP 372

Query: 169 FLRCRREDIRSFLLQRNIS 187
           F    ++++R+      + 
Sbjct: 373 FRELFKDEVRAIGRLLQVP 391


>gi|270308142|ref|YP_003330200.1| GMP synthase (glutamine-hydrolysing) [Dehalococcoides sp. VS]
 gi|270154034|gb|ACZ61872.1| GMP synthase (glutamine-hydrolysing) [Dehalococcoides sp. VS]
          Length = 560

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKD 68
           +R  V    ++ A+SGG DS  +   +H  + +      + + I V++ L  RE A  
Sbjct: 256 IREQVGGGQVICALSGGVDSAVVASLIHKAIGE------QLTCIYVNNGLLRREEADR 307


>gi|90416235|ref|ZP_01224167.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine gamma proteobacterium HTCC2207]
 gi|90331960|gb|EAS47174.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine gamma proteobacterium HTCC2207]
          Length = 525

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 62/189 (32%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           V+  V  +H+L+ +SGG DS  +   LH  +        + + + VD+  LR+   D   
Sbjct: 221 VKQQVGDSHVLLGLSGGVDSSVVAALLHKAI------GAQLTCVFVDNGLLRKNEGD--- 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTI-----NA 119
            V +   + + +   V+                     R+       E          N 
Sbjct: 272 MVMEMFANNMGVK--VIRANAQDKFLDGLAGVSDPEKKRKVIGNTFIEIFDEESQKIKNV 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + +      +        +  D+ L +  P     ++++R 
Sbjct: 330 NFLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMALELVEPLRELFKDEVRK 386

Query: 180 FLLQRNISW 188
             ++  +  
Sbjct: 387 IGVELGLPH 395


>gi|91793370|ref|YP_563021.1| queuosine biosynthesis protein QueC [Shewanella denitrificans
           OS217]
 gi|123060891|sp|Q12MM8|QUEC_SHEDO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|91715372|gb|ABE55298.1| ExsB [Shewanella denitrificans OS217]
          Length = 232

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +  AI+ D+  R    +E+     + S+L
Sbjct: 5   VVV-FSGGQDSTTCLIQALTQFD--------EVHAITFDYGQRHN--EEIEVAKALASQL 53

Query: 81  RIAHSVVSWKNSKPQTGLMAAARE 104
           RIA   V   +   +  + A  R+
Sbjct: 54  RIASHKVMDVSLLNELAISALTRD 77


>gi|27366010|ref|NP_761538.1| queuosine biosynthesis protein QueC [Vibrio vulnificus CMCP6]
 gi|81447969|sp|Q8D985|QUEC_VIBVU RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|27362210|gb|AAO11065.1| Queuosine Biosynthesis QueC ATPase [Vibrio vulnificus CMCP6]
          Length = 231

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL+           +  AI+ D+  R   + E+    ++   L
Sbjct: 5  VVV-FSGGQDSTTCLVKALNEFD--------EVHAITFDYGQRH--RLEIEVAQNLAKEL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 GVAAHKV 60


>gi|37679725|ref|NP_934334.1| queuosine biosynthesis protein QueC [Vibrio vulnificus YJ016]
 gi|81757651|sp|Q7ML86|QUEC_VIBVY RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|37198470|dbj|BAC94305.1| predicted ATPase [Vibrio vulnificus YJ016]
          Length = 232

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL+           +  AI+ D+  R   + E+    ++   L
Sbjct: 5  VVV-FSGGQDSTTCLVKALNEFD--------EVHAITFDYGQRH--RLEIEVAQNLAKEL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 GVAAHKV 60


>gi|315122753|ref|YP_004063242.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496155|gb|ADR52754.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 398

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 26/128 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEVRYVS 74
            ++VA+SGG DS  +   L     D     ++      +      R+ +     +V    
Sbjct: 14  RVVVAMSGGVDSSIVAALLKRDGYDVVGVTLQLY----NGGKESKRKGSCCAGQDVYDAR 69

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTIN 118
            VC  + + H V  ++       ++  A                R  ++  +    + + 
Sbjct: 70  RVCDAIDVPHYVFDYEERFHNAVIVPFANAYIAGETPLPCVDCNRTVKFLDLLSVMRRLG 129

Query: 119 ATLIMTAH 126
           A ++ T H
Sbjct: 130 ADVLATGH 137


>gi|261403835|ref|YP_003248059.1| exsB protein [Methanocaldococcus vulcanius M7]
 gi|261370828|gb|ACX73577.1| exsB protein [Methanocaldococcus vulcanius M7]
          Length = 232

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS         +  DR +   + +AI+ ++  ++  K E+     +C  L I H 
Sbjct: 7  LSGGLDSTV----ATLIAKDRGY---EMTAITFNYG-QKAVKREINSAKKICEILGIKHI 58

Query: 86 VVS 88
          VV 
Sbjct: 59 VVD 61


>gi|297617826|ref|YP_003702985.1| NAD synthase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145663|gb|ADI02420.1| NAD synthase [Syntrophothermus lipocalidus DSM 12680]
          Length = 273

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 15/118 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-TAKDEVRYVSDVCSRL 80
           +++  SGG+DS  LL     VL     G+ K  A++      E  +++E+ +   +   +
Sbjct: 21  VVLGFSGGADSTLLLKVSLDVL-----GRTKVLAVTFH---SEIQSENELTHALQLAQSM 72

Query: 81  RIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
              H V+     +               +  RY  +   A       ++    + D  
Sbjct: 73  DAQHLVIEGNELQNDLFVTNPPDRCYYCKLRRYRQLLSLAAERQFRNVIDGSNYSDLA 130


>gi|259503176|ref|ZP_05746078.1| argininosuccinate synthase [Lactobacillus antri DSM 16041]
 gi|259168833|gb|EEW53328.1| argininosuccinate synthase [Lactobacillus antri DSM 16041]
          Length = 414

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 54/189 (28%), Gaps = 45/189 (23%)

Query: 18  YPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHC-------LRETAKD- 68
               I++A SGG D S+ +   ++              A  +D         +++ A   
Sbjct: 7   AKEKIVLAYSGGLDTSVAIAWLMNK--------GYDVIACCIDVGEGLDLEAIQQKAAAI 58

Query: 69  --------EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
                   + +   D   +  +    V     +    + A +R      +   AK   AT
Sbjct: 59  GAWKSVVIDAK--RDFAEQFVLPALQVHAMYEQKYPLVSALSRPLIVQKLVGVAKEYGAT 116

Query: 121 LIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            I    T   +DQ+                G+  +   +  +  +          RE+  
Sbjct: 117 AIAHGCTGKGNDQV------------RFEAGIHALAPEMKIEDPIR----DWHWSREEEI 160

Query: 179 SFLLQRNIS 187
            +    NI 
Sbjct: 161 QYAKDNNIP 169


>gi|206579796|ref|YP_002237144.1| GMP synthase (glutamine-hydrolyzing) [Klebsiella pneumoniae 342]
 gi|288934103|ref|YP_003438162.1| GMP synthase, small subunit [Klebsiella variicola At-22]
 gi|290508301|ref|ZP_06547672.1| GMP synthase [Klebsiella sp. 1_1_55]
 gi|226739635|sp|B5XNM4|GUAA_KLEP3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|206568854|gb|ACI10630.1| GMP synthase (glutamine-hydrolyzing) [Klebsiella pneumoniae 342]
 gi|288888832|gb|ADC57150.1| GMP synthase, small subunit [Klebsiella variicola At-22]
 gi|289777695|gb|EFD85692.1| GMP synthase [Klebsiella sp. 1_1_55]
          Length = 525

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 221 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 271

Query: 72  YVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALI-----SEHAKTINATL 121
            V D       +    V     + ++        A R+    +       E  K  +   
Sbjct: 272 QVMDMFGDHFGLNIVHVEGEQRFLDALKGENDPEAKRKIIGRVFVEVFDEEALKLDDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|182413073|ref|YP_001818139.1| ExsB family protein [Opitutus terrae PB90-1]
 gi|177840287|gb|ACB74539.1| ExsB family protein [Opitutus terrae PB90-1]
          Length = 320

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 24/173 (13%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           A+SGG DS  + +  H  L  R       + +  +  +RE    E   V  +  +L +  
Sbjct: 35  ALSGGVDSSVVTMLGHRALGPRLR-----TVLIENGLMREG---EPERVRAIFEQLGVKV 86

Query: 85  SVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
            ++  +            P+    A  +     +     +   A  ++      D  ETV
Sbjct: 87  EIIDAREEFFAALKGITDPEEKREAITQTFYKKVFGRIVRESGAKFLLQGTILTDVDETV 146

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
               +R +     +G+              I  P +R R++ +R       + 
Sbjct: 147 A-GIKRQHNVFAQLGIDPQA-----TFGYEILEPLIRLRKDGVRKVGQALGLP 193


>gi|183219981|ref|YP_001837977.1| hypothetical protein LEPBI_I0563 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167778403|gb|ABZ96701.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 284

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 20/222 (9%)

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL-RCRREDIRSFLLQRNISWCEDPSNT 195
           M   R   +K            +D   ++   FL      ++  F+   N+   ED SN 
Sbjct: 1   MHLTRGGGKKSF-----YTLPPFDGERFLPLVFLEDHELNELYQFVSA-NMRIFEDESNG 54

Query: 196 DDRFERVRVRRFVRDIDLHALYLKMK---KFQDLRVKVNNAVAMLIPKYLTVHMRSIIAI 252
           D  ++R R+R  +  I     +   K    F D R ++N        +  +         
Sbjct: 55  DPIYKRNRIRMELIPILEREKWNFFKTYWNFHD-RSQLNLQFDGFSNQSQSYAPHLFRIP 113

Query: 253 SQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVID-- 310
               ++++ +    L+     + G     P Y+S          G+R  +      +   
Sbjct: 114 HDTWVSLNLSAKKELIDFHLKLMGM---YPLYKSGFENFHLQSEGERAFLENKNCYLYKS 170

Query: 311 RRANFLWITRAVRNLPTLILYPEETTV---WD-GRYQFQNLS 348
           +  +   I +        I   E   +   W+  R++  +  
Sbjct: 171 KFGDLFIIDKKSPAFKKAISNREGQILVIEWNQNRFKINDPD 212


>gi|238788015|ref|ZP_04631811.1| Queuosine biosynthesis protein queC [Yersinia frederiksenii ATCC
          33641]
 gi|238723963|gb|EEQ15607.1| Queuosine biosynthesis protein queC [Yersinia frederiksenii ATCC
          33641]
          Length = 232

 Score = 44.5 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   I+ D+  R   + E+     + ++L
Sbjct: 5  VVV-FSGGQDSTTCLIQALQQYD--------EVHCITFDYGQRH--RAEIDIARKLAAKL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVKAHKVLDV 63


>gi|323692955|ref|ZP_08107176.1| GMP synthase [Clostridium symbiosum WAL-14673]
 gi|323502956|gb|EGB18797.1| GMP synthase [Clostridium symbiosum WAL-14673]
          Length = 513

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V     L A+SGG DS    + +   +        + + + VDH  LR+   DEV 
Sbjct: 209 IREKVGSGRALCALSGGVDSSVAAVMMAKAIGK------QLTCVFVDHGLLRKNEGDEVE 262


>gi|323486022|ref|ZP_08091353.1| GMP synthase [Clostridium symbiosum WAL-14163]
 gi|323400589|gb|EGA92956.1| GMP synthase [Clostridium symbiosum WAL-14163]
          Length = 513

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V     L A+SGG DS    + +   +        + + + VDH  LR+   DEV 
Sbjct: 209 IREKVGSGRALCALSGGVDSSVAAVMMAKAIGK------QLTCVFVDHGLLRKNEGDEVE 262


>gi|153212723|ref|ZP_01948380.1| exsB protein [Vibrio cholerae 1587]
 gi|124116373|gb|EAY35193.1| exsB protein [Vibrio cholerae 1587]
          Length = 231

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|118602730|ref|YP_903945.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|166235080|sp|A1AX17|MNMA_RUTMC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118567669|gb|ABL02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 363

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 35/139 (25%)

Query: 13  VRSLVYPAHILVAVSGGSD-SMGLLIALHS-VLSDRSFGKIKFSAISVDHCLRETA---- 66
           +++L     I+V +SGG D S+  L+ L      +  F K             E      
Sbjct: 1   MKNLNKNTKIIVGLSGGVDSSVATLLLLKQGYQVEALFMK----------NWEEDDKSGY 50

Query: 67  ---KDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARY 107
              + ++     +  +L +    V++                   R          + ++
Sbjct: 51  CSVEQDLSDAQKIADKLDVKLHAVNFSADYWNDVFIHFLKEHKKGRTPNPDVLCNQKIKF 110

Query: 108 ALISEHAKTINATLIMTAH 126
            +  EHA ++ A  I T H
Sbjct: 111 RVFLEHALSLGADKIATGH 129


>gi|327484036|gb|AEA78443.1| Queuosine Biosynthesis QueC ATPase [Vibrio cholerae LMA3894-4]
          Length = 231

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|296104181|ref|YP_003614327.1| GMP synthase (glutamine-hydrolyzing) [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058640|gb|ADF63378.1| GMP synthase (glutamine-hydrolyzing) [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 525

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 221 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 271

Query: 72  YVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALI-----SEHAKTINATL 121
            V D       +    V     + ++        A R+    +       E  K  +   
Sbjct: 272 QVMDMFGDHFGLNIVHVEGEQRFLDALAGVNDPEAKRKIIGRVFVEVFDEEALKLEDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|294101584|ref|YP_003553442.1| GMP synthase, large subunit [Aminobacterium colombiense DSM 12261]
 gi|293616564|gb|ADE56718.1| GMP synthase, large subunit [Aminobacterium colombiense DSM 12261]
          Length = 510

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 61/190 (32%), Gaps = 33/190 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           V+     A ++  +SGG DS    +     + DR         I V++  LR     E  
Sbjct: 208 VQQKTENARVICGLSGGVDSTVAAVLTSKAIGDR------LECIFVNNGLLR---HREAE 258

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
            V +   +L +    V   N           P+               +E AK  NA  +
Sbjct: 259 RVLEKYKQLDLNVHYVDASNRFLDALKGVIDPEQKRKIIGETFIRVFEAEAAKIHNAEWL 318

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFLRCRREDI 177
           +    + D +E            KG G S +        +  D+ L +  P     ++++
Sbjct: 319 LQGTLYPDVIE---------SGHKGKGASVIKSHHNVGGLPEDMKLKVLEPLRDLFKDEV 369

Query: 178 RSFLLQRNIS 187
           R+      + 
Sbjct: 370 RTIGALLGVP 379


>gi|296109149|ref|YP_003616098.1| exsB protein [Methanocaldococcus infernus ME]
 gi|295433963|gb|ADG13134.1| exsB protein [Methanocaldococcus infernus ME]
          Length = 232

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS    +   ++            AI+ ++  R  AK E+     +   L+I H 
Sbjct: 7  LSGGLDSTVATMYAKAL-------GYDLLAITYNYGQRA-AKREIEAAKKISEILKIEHK 58

Query: 86 VVSWKNSKP 94
          VV     K 
Sbjct: 59 VVELNFVKE 67


>gi|50305119|ref|XP_452518.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|74607012|sp|Q6CU71|GUAA_KLULA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49641651|emb|CAH01369.1| KLLA0C07172p [Kluyveromyces lactis]
          Length = 524

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R LV P A ++ AVSGG DS      +   + DR      F AI VD+  LR     E 
Sbjct: 215 IRELVGPDAEVIGAVSGGVDSTVAAKLMDRAIGDR------FHAIMVDNGVLRLN---EA 265

Query: 71  RYVSD-VCSRLRIAHSVVSWKNS 92
             V   +   L I  +VV   + 
Sbjct: 266 ATVKKTLGEGLGINLTVVDASDE 288


>gi|74204229|dbj|BAE39875.1| unnamed protein product [Mus musculus]
          Length = 692

 Score = 44.5 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V  + +LV +SGG DS      L+  L+          A+ +D+   R   K E +
Sbjct: 230 IKEKVGTSKVLVLLSGGVDSTVCTALLNRALNQDQD-----IAVHIDNGFMR---KRESQ 281

Query: 72  YVSDVCSRLRIAHSVVSWKNS 92
            V +   +L I   V++  +S
Sbjct: 282 SVEEALKKLGIQVKVINAAHS 302


>gi|254442105|ref|ZP_05055581.1| conserved hypothetical protein TIGR00268 [Verrucomicrobiae
           bacterium DG1235]
 gi|198256413|gb|EDY80721.1| conserved hypothetical protein TIGR00268 [Verrucomicrobiae
           bacterium DG1235]
          Length = 274

 Score = 44.5 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 23/119 (19%)

Query: 23  LVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVC 77
           ++A SGG DS + L +A   +  +R+ G I              +    + ++      C
Sbjct: 25  IIAFSGGVDSALVLYLARQHLGKERAIGCIS------------DSPSLKRSDLEEAKAFC 72

Query: 78  SRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
               I   +++ K    +           A +   Y  +S   +     + +     DD
Sbjct: 73  REHDIRLEIINTKEIDDEAYYTNPVNRCYACKSHLYQNLSSLLERFPGFVALNGTNTDD 131


>gi|147669399|ref|YP_001214217.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Dehalococcoides sp. BAV1]
 gi|289432665|ref|YP_003462538.1| GMP synthase, large subunit [Dehalococcoides sp. GT]
 gi|146270347|gb|ABQ17339.1| GMP synthase (glutamine-hydrolyzing) [Dehalococcoides sp. BAV1]
 gi|288946385|gb|ADC74082.1| GMP synthase, large subunit [Dehalococcoides sp. GT]
          Length = 560

 Score = 44.5 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKD 68
           +R  V    ++ A+SGG DS  +   +H  + D      + + I V++ L  RE A  
Sbjct: 256 IREQVGDGQVICALSGGVDSAVVASLIHKAIGD------QLTCIYVNNGLLRREEADR 307


>gi|150401671|ref|YP_001325437.1| hypothetical protein Maeo_1249 [Methanococcus aeolicus Nankai-3]
 gi|150014374|gb|ABR56825.1| conserved hypothetical protein [Methanococcus aeolicus Nankai-3]
          Length = 302

 Score = 44.5 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 53/197 (26%), Gaps = 30/197 (15%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++ F    +    I+  +SGG DS   L     +        IK  A+   H      
Sbjct: 24  EILQNFEEQNLLDKPIIAMLSGGKDSSTALAMAKDL-----DLDIKL-AVHFVHKWS--- 74

Query: 67  KDEV---RYVSDVCSRLRIAHSVVSWKNSKPQ---------TGLMAAAREARYALISEHA 114
                    V  +     +        +   Q           +    +      I E A
Sbjct: 75  --WELPKTQVQKITKEYDVPLIFYDITDVLCQRIQGGHSWGKNICKICKTIMKEKIREIA 132

Query: 115 KTINATLIMTAHTFDDQLET----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
               A  I+T  +    LE     ++      Y         +        N+   RP +
Sbjct: 133 YKEKAYTILTGESA---LEKIAGPIFQYVNETYGSYVYSKMELTPVPKKYRNIKFFRPLI 189

Query: 171 RCRREDIRSFLLQRNIS 187
           RC   DI +     N+ 
Sbjct: 190 RCGCNDIEALQKHYNVK 206


>gi|298675437|ref|YP_003727187.1| GMP synthase large subunit [Methanohalobium evestigatum Z-7303]
 gi|298288425|gb|ADI74391.1| GMP synthase, large subunit [Methanohalobium evestigatum Z-7303]
          Length = 304

 Score = 44.5 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLR 81
           ++A+SGG DS    +  H+ + D          I ++  L R+    E   + +  + + 
Sbjct: 24  IIALSGGVDSSVCTVLAHNAIGD------NLVPIYIETGLMRKG---ETERIKETFADMN 74

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARY------ALISEHAKTINATLIMTAHTFDDQLETV 135
           +    +  +      G+     + R        +  E AK   A  ++    + D++E  
Sbjct: 75  LRVVNMKNRFLNALEGVEDPEEKRRAVGETFIRVFEEIAKEEQAEYLIQGTIYPDRIE-- 132

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                    +    + G+ D + +     I  P     ++++R      ++ 
Sbjct: 133 ----SDGGIKSHHNVGGLPDVVDFKD---IVEPISDLYKDEVREVAKALDLP 177


>gi|221124512|ref|XP_002166691.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
 gi|260221446|emb|CBA30017.1| GMP synthase [glutamine-hydrolyzing] [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 548

 Score = 44.5 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 29/198 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V+  +R  V    +++ +SGG DS      +H  + D      + + + VDH  LR  
Sbjct: 215 EAVQK-IREQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGLLRLN 267

Query: 66  AKDEV--RYVSDVCSR----------LRIAHSVVSWKNSKPQTGLM----AAAREARYAL 109
             D V   +V  + ++          L     V   +  +   G        A  AR   
Sbjct: 268 EGDMVMDMFVGKLHAKVIRVDASDQFLGHLSGVSDPEAKRKIIGREFVEVFKAEAARLTA 327

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E      A  +     + D +E+      +      +        +   L L +  P 
Sbjct: 328 AGE--SKNGAKWLAQGTIYPDVIES---GGAKSKKAVTIKSHHNVGGLPEQLGLKLLEPL 382

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R   +   + 
Sbjct: 383 RELFKDEVRELGVALGLP 400


>gi|73748640|ref|YP_307879.1| GMP synthase [Dehalococcoides sp. CBDB1]
 gi|91206805|sp|Q3ZXH7|GUAA_DEHSC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|73660356|emb|CAI82963.1| GMP synthase [Dehalococcoides sp. CBDB1]
          Length = 533

 Score = 44.5 bits (104), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKD 68
           +R  V    ++ A+SGG DS  +   +H  + D      + + I V++ L  RE A  
Sbjct: 229 IREQVGDGQVICALSGGVDSAVVASLIHKAIGD------QLTCIYVNNGLLRREEADR 280


>gi|330816541|ref|YP_004360246.1| argininosuccinate synthase [Burkholderia gladioli BSR3]
 gi|327368934|gb|AEA60290.1| argininosuccinate synthase [Burkholderia gladioli BSR3]
          Length = 404

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 58/183 (31%), Gaps = 31/183 (16%)

Query: 18  YPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY---- 72
            P HIL+A SGG D S  L   L      R       +A   +   +E   D  R     
Sbjct: 2   KPKHILLAYSGGLDTSTAL-HFLKQQFDCR------VTAYCANLGQKE---DWERMKKRA 51

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA-AAREARYALISEHAKTI---NATLIMTAHTF 128
                  L IA    ++        L A AA E  Y L +  A+       T    AH  
Sbjct: 52  AIAGADELVIADLRETFIRDYVFPALKANAAYERDYLLGTPLARPAIVKGLTDYALAHDV 111

Query: 129 DDQLETVYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRC---RREDIRSFLLQR 184
           D               +KG   +     + +   NL    P+       RED+ ++  + 
Sbjct: 112 D--------TLSHGCTQKGNDQVRFEMASRILAPNLPTVAPWRMWDIASREDLFAYCQKH 163

Query: 185 NIS 187
            I 
Sbjct: 164 GIP 166


>gi|327405886|ref|YP_004346724.1| sulfate adenylyltransferase subunit 2 [Fluviicola taffensis DSM
          16823]
 gi|327321394|gb|AEA45886.1| sulfate adenylyltransferase subunit 2 [Fluviicola taffensis DSM
          16823]
          Length = 299

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 9  VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETA 66
          +R        PA +    SGG DS+ L+      L     GK  F  + VD  H  +E  
Sbjct: 16 LREVAGQFDRPALL---FSGGKDSICLVHL---ALKAFRPGKFPFPLVHVDTGHNFQEAL 69

Query: 67 KDEVRYVSDVCSRL 80
                  ++  +L
Sbjct: 70 DFRDTLAKELGEQL 83


>gi|70727185|ref|YP_254101.1| hypothetical protein SH2186 [Staphylococcus haemolyticus
          JCSC1435]
 gi|110816266|sp|Q4L4D0|QUEC_STAHJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|68447911|dbj|BAE05495.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 223

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 14 RSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
          ++L     I+V  SGG DS   L  A       + F  ++   ++ ++  R  A+ EV  
Sbjct: 4  QNLNKDKAIVV-FSGGQDSTTCLFYA------KKHFKDVEL--VTFNYGQRHDAEIEVA- 53

Query: 73 VSDVCSRLRIAHSVVS 88
           + +     + H ++ 
Sbjct: 54 -TRIAKEQNLKHHILD 68


>gi|312623408|ref|YP_004025021.1| exsb protein [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203875|gb|ADQ47202.1| exsB protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 221

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V +SGG DS  LL        D      +  AIS  +  ++ +K E+ +    CS L 
Sbjct: 4  VVV-LSGGMDSTTLLY-------DVKSQGYEVFAISFLYG-QKHSK-ELEFAKKTCSLLS 53

Query: 82 IAHSVVSW 89
          I H +V  
Sbjct: 54 IPHKIVDI 61


>gi|312128629|ref|YP_003993503.1| exsb protein [Caldicellulosiruptor hydrothermalis 108]
 gi|311778648|gb|ADQ08134.1| exsB protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 234

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V +SGG DS  LL        D      +  AIS  +  ++ +K E+ +    CS L 
Sbjct: 17 VVV-LSGGMDSTTLLY-------DVKSQGYEVFAISFLYG-QKHSK-ELEFAKKTCSLLS 66

Query: 82 IAHSVVSW 89
          I H +V  
Sbjct: 67 IPHKIVDI 74


>gi|266624414|ref|ZP_06117349.1| argininosuccinate synthase [Clostridium hathewayi DSM 13479]
 gi|288863737|gb|EFC96035.1| argininosuccinate synthase [Clostridium hathewayi DSM 13479]
          Length = 409

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 60/201 (29%), Gaps = 37/201 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------------HCLRET 65
              +++A SGG D+         +   +     +     +D               L   
Sbjct: 2   KEKVILAYSGGLDTTA------IIPWLKENFDYEVVCCCIDCGQGNELDGLEERAKLSGA 55

Query: 66  AKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +K      V D C    +     +           + AR A    + E A+   AT I  
Sbjct: 56  SKLYIEDLVDDFCDNYIVPCVQANSVYENKYLLGTSMARPAIAKRLVEIARKEGATAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+     R +         L  +    + D+       +    RED   +  
Sbjct: 116 GATGKGNDQI-----RFELGIKALAPDLKIIAPWRMTDV-------WTMQSREDEIEYCK 163

Query: 183 QRNISWCEDPSNTDDRFERVR 203
           Q  I+    P + D+ + R R
Sbjct: 164 QHGINL---PFSADNSYSRDR 181


>gi|227505290|ref|ZP_03935339.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium striatum ATCC 6940]
 gi|227198123|gb|EEI78171.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium striatum ATCC 6940]
          Length = 511

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 61/196 (31%), Gaps = 40/196 (20%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RET--- 65
           + +      +  +SGG DS     A+ + L  R+ G  + + + VDH L     RE    
Sbjct: 202 KQVGPEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGEREQVEK 255

Query: 66  ------------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--IS 111
                       A +   +++ +         V   +  +   G        R     ++
Sbjct: 256 DFVASTGAKLVTADEREAFLAKLA-------GVTEPEAKRKAIGAEFIRSFERAVAGVLN 308

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           +     +   ++    + D +E+             +        +  D+   +  P   
Sbjct: 309 DAPAGSSVDFLVQGTLYPDVVES-----GGGDGTANIKSHHNVGGLPDDVEFELVEPLRL 363

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R+   +  + 
Sbjct: 364 LFKDEVRAVGRELGLP 379


>gi|153825260|ref|ZP_01977927.1| exsB protein [Vibrio cholerae MZO-2]
 gi|153828777|ref|ZP_01981444.1| exsB protein [Vibrio cholerae 623-39]
 gi|183179364|ref|ZP_02957575.1| exsB protein [Vibrio cholerae MZO-3]
 gi|254286182|ref|ZP_04961142.1| exsB protein [Vibrio cholerae AM-19226]
 gi|148875730|gb|EDL73865.1| exsB protein [Vibrio cholerae 623-39]
 gi|149741088|gb|EDM55147.1| exsB protein [Vibrio cholerae MZO-2]
 gi|150423851|gb|EDN15792.1| exsB protein [Vibrio cholerae AM-19226]
 gi|183012775|gb|EDT88075.1| exsB protein [Vibrio cholerae MZO-3]
          Length = 231

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|89094123|ref|ZP_01167066.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanospirillum sp. MED92]
 gi|89081598|gb|EAR60827.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanospirillum sp. MED92]
          Length = 526

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V    +L+ +SGG DS  +   LH  + D      + + + VD+  LR   K E  
Sbjct: 222 VREQVGNQKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---KQEGD 272

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTI-NA 119
            V D     + +   V+         G +       + R         +  + A  + + 
Sbjct: 273 QVMDMFAKNMGV--RVIRADAEDLFLGRLEGENDPEKKRKIIGNTFIEVFDDEATKLSDV 330

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + +      +        +  D+   +  P     ++++R 
Sbjct: 331 NFLAQGTIYPDVIES---AAAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRK 387

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 388 LGLELGLPY 396


>gi|294055884|ref|YP_003549542.1| GMP synthase, large subunit [Coraliomargarita akajimensis DSM
           45221]
 gi|293615217|gb|ADE55372.1| GMP synthase, large subunit [Coraliomargarita akajimensis DSM
           45221]
          Length = 515

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 67/200 (33%), Gaps = 34/200 (17%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R +V   H+++ +SGG DS      +H  +        + + + VD+  LR 
Sbjct: 201 IEQTVQKIRDMVGDEHVILGLSGGVDSSVAAALIHKAIGR------QLTCVFVDNGLLR- 253

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA------RY----------- 107
                  +  +   +L   H  +  + +  +   +    +       R            
Sbjct: 254 ------LHEREQVEKLYGDHFDLDVRVADKRKLFLDRLADVSDPEQKRKIIGNTFVEVFD 307

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             ++E   + N T +     + D +E+V +          +        +   +NL +  
Sbjct: 308 EAVNELKSSGNYTFLAQGTLYPDVIESVAID---GNPAALIKSHHNVGGLPEKMNLKLLE 364

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R    Q  + 
Sbjct: 365 PLRELFKDEVRELGTQLGLP 384


>gi|317479105|ref|ZP_07938246.1| N-acetyl sugar amidotransferase [Bacteroides sp. 4_1_36]
 gi|316904761|gb|EFV26574.1| N-acetyl sugar amidotransferase [Bacteroides sp. 4_1_36]
          Length = 380

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 12/86 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-E 64
           +E VR   +   Y    ++ +SGG DS  +L         R F         +D      
Sbjct: 56  LEQVRISGKGKKYDC--ILGLSGGLDSCYMLHLAVKEWGLRPF------VFHIDAGWNLP 107

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK 90
            A      +  +C +L +   +    
Sbjct: 108 VA---EENIKKLCDKLNVHLHIQKLD 130


>gi|310657467|ref|YP_003935188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sticklandii DSM 519]
 gi|308824245|emb|CBH20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium sticklandii]
          Length = 372

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 61/195 (31%), Gaps = 40/195 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRY 72
              +++ +SGG DS    + L     D      +++ +     +        TA ++   
Sbjct: 2   KKRVVLGMSGGVDSSVSAVILKEAGYDVVGIFMKNWDEKDEDGVC-------TATEDYED 54

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
           V  V  +L I +  V+++                  R          E ++    ++A  
Sbjct: 55  VRRVADQLGIPYYTVNFEKEYWDRVFSYFLDEYNKGRTPNPDVMCNQEIKFNAFLDYALK 114

Query: 117 INATLIMTAHTFDDQLET-----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A  I   H    ++E        +R   +  ++   LS +    L         P   
Sbjct: 115 LDADYIAMGHYA--RVEERDGKFYLLRGVDNNKDQTYFLSRIGQKALSKS----LFPIGE 168

Query: 172 CRREDIRSFLLQRNI 186
             +  +R    +  +
Sbjct: 169 LEKSKVREIAEKNEL 183


>gi|312876999|ref|ZP_07736973.1| exsB protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796230|gb|EFR12585.1| exsB protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 217

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS  LL        D      +  AIS  +  ++ +K E+ +    C  L + H 
Sbjct: 3  LSGGVDSTTLLY-------DVKSQGYEVFAISFLYG-QKHSK-ELEFAKKTCKLLSVPHK 53

Query: 86 VVSW 89
          +V  
Sbjct: 54 IVDI 57


>gi|312792427|ref|YP_004025350.1| exsb protein [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179567|gb|ADQ39737.1| exsB protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 217

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS  LL        D      +  AIS  +  ++ +K E+ +    C  L + H 
Sbjct: 3  LSGGVDSTTLLY-------DVKSQGYEVFAISFLYG-QKHSK-ELEFAKKTCKLLSVPHK 53

Query: 86 VVSW 89
          +V  
Sbjct: 54 IVDI 57


>gi|325269460|ref|ZP_08136077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella multiformis DSM 16608]
 gi|324988381|gb|EGC20347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella multiformis DSM 16608]
          Length = 360

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 66/222 (29%), Gaps = 42/222 (18%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC------LRETAKD 68
             +    I V +SGG DS  ++  L  +        I+                  ++++
Sbjct: 4   QELKDKRIAVLLSGGVDSSVVVYELARLGLHPDCFYIRI-------GPEEKEEWDCSSEE 56

Query: 69  EVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLM-----AAAREARYALISE 112
           ++   + V  R      +V            +   K + G          R  ++    E
Sbjct: 57  DMEMATAVAHRFGCRLQIVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAFDE 116

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-SRPFLR 171
                   LI T H    Q E +  R     +   +         +YD  L     P   
Sbjct: 117 KM-GHGYDLIATGHYA--QTEWIDGRKWLTTSPDPVKDQTDFLAQIYDWQLKKAVFPIGH 173

Query: 172 CRREDIRSFLLQRNI--SWCEDPS------NTD-DRFERVRV 204
             ++++R    Q ++  +  +D        N D + + R  +
Sbjct: 174 YEKDEVRRIAEQEHLINAHRKDSQGICFLGNIDYNEYVRRYL 215


>gi|312070856|ref|XP_003138339.1| hypothetical protein LOAG_02754 [Loa loa]
 gi|307766493|gb|EFO25727.1| hypothetical protein LOAG_02754 [Loa loa]
          Length = 383

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 46/201 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR--ETAKD-----EVRY 72
             ++ A+SGG DS      L      R F  I    ++ D   R  E +       + + 
Sbjct: 5   RKVVCAISGGVDSAVSAYLLKK----RGFDVIGVHMVNWD---RVEEDSSKCPQSVDEKD 57

Query: 73  VSDVCSRLRIAHSV---VSWKNSKPQTGLMAAAREAR--------------YALISEHAK 115
              VC+ L+I   V   V    ++  T L+   R+ R                       
Sbjct: 58  AEKVCNHLQIPFYVANFVDRYWNEIFTYLLDNYRKGRTVVSDVLCNKTIKFDRFHKYAFD 117

Query: 116 TINATLIMTAHTF----DD----QLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLW 164
            + A  + T H       D    +LET  +R          +   LS +  + L      
Sbjct: 118 ELQADAVATGHFARTSFGDFLEKRLETGLIRLLAAVDPIKDQTFFLSTLTQSQLRRSMF- 176

Query: 165 ISRPFLRCRREDIRSFLLQRN 185
              P     ++ +R   +   
Sbjct: 177 ---PIGSLTKQQVRQIAVDVG 194


>gi|239939761|ref|ZP_04691698.1| succinoglycan biosynthesis regulator [Streptomyces roseosporus
          NRRL 15998]
          Length = 220

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          VSGG DS+ L   LH+          +   +S+D+  R   + E  Y      R+   H 
Sbjct: 5  VSGGLDSVVLAHHLHA-------EGHEVHLLSIDYGQRH--RKEHDYARIAADRIGAEHE 55

Query: 86 VVSWKNSK 93
          +V   N  
Sbjct: 56 IVDLSNVA 63


>gi|153836122|ref|ZP_01988789.1| ExsB protein [Vibrio parahaemolyticus AQ3810]
 gi|149750397|gb|EDM61142.1| ExsB protein [Vibrio parahaemolyticus AQ3810]
          Length = 232

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEIAQKIAKDL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|110806438|ref|YP_689958.1| GMP synthase [Shigella flexneri 5 str. 8401]
 gi|123048017|sp|Q0T212|GUAA_SHIF8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|110615986|gb|ABF04653.1| GMP synthetase (glutamine-hydrolyzing) [Shigella flexneri 5 str.
           8401]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVREIGLELGLPY 395


>gi|298206790|ref|YP_003714969.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Croceibacter atlanticus HTCC2559]
 gi|83849422|gb|EAP87290.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Croceibacter atlanticus HTCC2559]
          Length = 509

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 64/189 (33%), Gaps = 29/189 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +    +++ +SGG DS    + LH  +            I V++  LR+       
Sbjct: 207 LKEKIGEDKVVLGLSGGVDSTVAAVLLHKAIGK------NLYCIFVNNGLLRKN-----E 255

Query: 72  YVSDVCSRL--------RIAHSVVSWKNSKPQTGLMAAAREARYALIS----EHAKTINA 119
           +V DV  +          +  S    K  + ++      +E     I     E     + 
Sbjct: 256 FV-DVLDQYKDMGLNVKGVDASARFLKALEGKSDPEEKRKEIGRVFIEVFDDEAHDIEDV 314

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E++ +       +    + G+ D     + L I  P     ++++R 
Sbjct: 315 KFLAQGTIYPDVIESISVNGPSATIKSHHNVGGLPD----FMKLKIVEPLRMLFKDEVRR 370

Query: 180 FLLQRNISW 188
              +  IS 
Sbjct: 371 VGKEMGISP 379


>gi|291514449|emb|CBK63659.1| GMP synthase (glutamine-hydrolyzing) [Alistipes shahii WAL 8301]
          Length = 508

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E+    +R  +    +++A+SGG DS    + LH  +            + VD  L
Sbjct: 199 VEATVRELREKLGDDKVVLALSGGVDSSVAAVLLHKAIGK------NLYCVFVDSGL 249


>gi|57234409|ref|YP_181563.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Dehalococcoides ethenogenes 195]
 gi|91206804|sp|Q3Z886|GUAA_DEHE1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57224857|gb|AAW39914.1| GMP synthase [Dehalococcoides ethenogenes 195]
          Length = 533

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKD 68
           +R  V    ++ A+SGG DS  +   +H  + D      + + I V++ L  RE A  
Sbjct: 229 IREQVGDGQVICALSGGVDSAVVASLIHKAIGD------QLTCIYVNNGLLRREEADR 280


>gi|160112811|sp|Q9X2V9|MCJC_ECOLX RecName: Full=Microcin J25-processing protein mcjC
 gi|78322019|emb|CAJ40934.1| microcin J25 processing protein [Escherichia coli]
          Length = 513

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S I+S+   +  +     I +  SGG DS    +  H++    +    KF A        
Sbjct: 176 STIDSIIDNIEMMRDNRKIALLFSGGLDS---ALIFHTLKESGN----KFCAYHF---FS 225

Query: 64  ETAKDEVR-YVSDVCSRLRIAHSVVS 88
           + + D  + +  + CS+  +    V+
Sbjct: 226 DESDDSEKYFAKEYCSKYGVDFISVN 251


>gi|4731434|gb|AAD28496.1|AF061787_3 McjC [Escherichia coli]
          Length = 442

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           S I+S+   +  +     I +  SGG DS    +  H++    +    KF A        
Sbjct: 176 STIDSIIDNIEMMRDNRKIALLFSGGLDS---ALIFHTLKESGN----KFCAYHF---FS 225

Query: 64  ETAKDEVR-YVSDVCSRLRIAHSVVS 88
           + + D  + +  + CS+  +    V+
Sbjct: 226 DESDDSEKYFAKEYCSKYGVDFISVN 251


>gi|87301596|ref|ZP_01084436.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 5701]
 gi|87283813|gb|EAQ75767.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. WH 5701]
          Length = 532

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           VR  V    +L+A+SGG DS  L   LH  + D+
Sbjct: 222 VRDRVGDKRVLLALSGGVDSSTLAFLLHRAIGDQ 255


>gi|307565030|ref|ZP_07627547.1| GMP synthase (glutamine-hydrolyzing) [Prevotella amnii CRIS 21A-A]
 gi|307346343|gb|EFN91663.1| GMP synthase (glutamine-hydrolyzing) [Prevotella amnii CRIS 21A-A]
          Length = 514

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I++    +++ +    +++ +SGG DS    + L+  +          + I VDH  L
Sbjct: 198 SFIDTTVEELKNQLGNDRVILGLSGGVDSSVCAVLLNKAI------GSNLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|300855514|ref|YP_003780498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium ljungdahlii DSM 13528]
 gi|300435629|gb|ADK15396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium ljungdahlii DSM 13528]
          Length = 358

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 62/208 (29%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-----------------VLSDRSFGKIKFSAISVDHCL 62
             ++V +SGG DS      L                          G    SA+      
Sbjct: 3   KKVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQVWQDDKYYEGMEGGCCSLSAV------ 56

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAAREARY 107
                D+ R V      L I + V++++N   +                    A  +  Y
Sbjct: 57  -----DDARLV---AYNLGIPYYVMNFRNEFKKCVIDYFIDEYTKGRTPNPCVACNK--Y 106

Query: 108 ALISEHAKT---INATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
               E  K    + A  + T H       +D+   V  +S+    ++   L  +    L 
Sbjct: 107 IKFDELLKRAMDLGADYVATGHYATVEKVNDRY--VLKKSKDSKKDQTYALYNLTQFQLE 164

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS 187
              +    P    ++E IR    +  ++
Sbjct: 165 HTLM----PCGIYKKEQIREIAKKIGLA 188


>gi|251788758|ref|YP_003003479.1| GMP synthase, large subunit [Dickeya zeae Ech1591]
 gi|247537379|gb|ACT06000.1| GMP synthase, large subunit [Dickeya zeae Ech1591]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +++ +SGG DS    + LH  + DR       + + VD+  LR     E  
Sbjct: 221 MRVQIGKDKVILGLSGGVDSSVTALLLHRAIGDR------LTCVFVDNGLLRLN---EAE 271

Query: 72  YVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
            V +    +  +    V  +N           P+       R        E  K  +   
Sbjct: 272 QVMEMFGDQFGLNIVHVQAENRFLSALAGIDDPEAKRKTIGRVFVEVFDEEAGKLTDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  D+ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPDDMALGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|229521472|ref|ZP_04410891.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae TM 11079-80]
 gi|229341570|gb|EEO06573.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae TM 11079-80]
          Length = 231

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|296136217|ref|YP_003643459.1| GMP synthase, large subunit [Thiomonas intermedia K12]
 gi|295796339|gb|ADG31129.1| GMP synthase, large subunit [Thiomonas intermedia K12]
          Length = 532

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E+V+  +R+ V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 211 EAVQS-IRAQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 259


>gi|290981496|ref|XP_002673466.1| glutamine amidotransferase [Naegleria gruberi]
 gi|284087050|gb|EFC40722.1| glutamine amidotransferase [Naegleria gruberi]
          Length = 558

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 65/191 (34%), Gaps = 26/191 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E+V+   +++    H+++A+SGG DS    + L   + DR         I VD+  LR  
Sbjct: 253 ETVKNLKQTIGESDHVVMALSGGVDSSVAAVLLQKAIGDR------LHCIFVDNGLLRLN 306

Query: 66  AKDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--- 117
             +  + +      L      +  S + +   K ++      +      I    K     
Sbjct: 307 --EFEQVLETYRDSLHLNVKGVEVSTLFYDALKGESDPEKKRKIIGAKFIEVFEKEAQQI 364

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            N   +     + D +E++            +        +   +++ +  P     +++
Sbjct: 365 SNVKHLGQGTIYPDVVESI--------GGATIKSHHNVGGLPEKMHMKVVEPLRLLFKDE 416

Query: 177 IRSFLLQRNIS 187
           +R    +  I 
Sbjct: 417 VRRVGKELGIP 427


>gi|326316683|ref|YP_004234355.1| GMP synthase large subunit [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323373519|gb|ADX45788.1| GMP synthase, large subunit [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 541

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I      +R+ V    +++ +SGG DS      +H  + D      + + + VDH 
Sbjct: 210 MKDHIAEAVESIRAQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHG 263

Query: 62  L 62
           L
Sbjct: 264 L 264


>gi|223999079|ref|XP_002289212.1| GMP synthase [Thalassiosira pseudonana CCMP1335]
 gi|220974420|gb|EED92749.1| GMP synthase [Thalassiosira pseudonana CCMP1335]
          Length = 539

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 31/199 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCL 62
             IE VR  V       H++ AVSGG DS    + +   + DR      F A+ VD  CL
Sbjct: 226 EFIEEVRATV---GPTGHVIGAVSGGVDSTVAAVLMTRAIGDR------FHAVLVDNGCL 276

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAR--------EARYA 108
           R   KDE   V   +     +    V  K+      K  T      +          +  
Sbjct: 277 R---KDEATKVLKRMRDDCGVNLRCVDAKDRFLGLLKGVTDPEQKRKIIGGTFIDIFQEE 333

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
                A++     ++    + D +E++  +      +    + G+  +    + L +  P
Sbjct: 334 ANKIVAESGKCDFLLQGTLYPDVIESISYKGPSATIKTHHNVGGLPAS----MKLKLIEP 389

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R   +   I 
Sbjct: 390 LRELFKDEVRELGIALGID 408


>gi|86147101|ref|ZP_01065418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. MED222]
 gi|218710012|ref|YP_002417633.1| tRNA-specific 2-thiouridylase MnmA [Vibrio splendidus LGP32]
 gi|85835166|gb|EAQ53307.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio sp. MED222]
 gi|218323031|emb|CAV19208.1| Probable tRNA(5-methylaminomethyl-2-thiouridylate)-
           methyltransferase [Vibrio splendidus LGP32]
          Length = 378

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 32/138 (23%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------- 65
           + S      ++V +SGG DS      L           +K           E        
Sbjct: 4   ISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCT 55

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YA 108
           A +++     VC +L I    +++                +  R               A
Sbjct: 56  AAEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKA 115

Query: 109 LISEHAKTINATLIMTAH 126
            +    + ++A  I   H
Sbjct: 116 FLEFADEVLDADYIAMGH 133


>gi|84391736|ref|ZP_00991638.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio splendidus 12B01]
 gi|84376449|gb|EAP93328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio splendidus 12B01]
          Length = 378

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 32/138 (23%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------- 65
           + S      ++V +SGG DS      L           +K           E        
Sbjct: 4   ISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCT 55

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YA 108
           A +++     VC +L I    +++                +  R               A
Sbjct: 56  AAEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKA 115

Query: 109 LISEHAKTINATLIMTAH 126
            +    + ++A  I   H
Sbjct: 116 FLEFADEVLDADYIAMGH 133


>gi|15641378|ref|NP_231010.1| queuosine biosynthesis protein QueC [Vibrio cholerae O1 biovar El
          Tor str. N16961]
 gi|121728522|ref|ZP_01681545.1| exsB protein [Vibrio cholerae V52]
 gi|147673208|ref|YP_001216925.1| queuosine biosynthesis protein QueC [Vibrio cholerae O395]
 gi|153819361|ref|ZP_01972028.1| exsB protein [Vibrio cholerae NCTC 8457]
 gi|153821348|ref|ZP_01974015.1| exsB protein [Vibrio cholerae B33]
 gi|227081537|ref|YP_002810088.1| exsB protein [Vibrio cholerae M66-2]
 gi|229505053|ref|ZP_04394563.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae BX 330286]
 gi|229511277|ref|ZP_04400756.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae B33]
 gi|229518395|ref|ZP_04407839.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae RC9]
 gi|229608057|ref|YP_002878705.1| queuosine biosynthesis protein QueC [Vibrio cholerae MJ-1236]
 gi|254848488|ref|ZP_05237838.1| exsB protein [Vibrio cholerae MO10]
 gi|255745753|ref|ZP_05419701.1| queuosine Biosynthesis QueC ATPase [Vibrio cholera CIRS 101]
 gi|262158969|ref|ZP_06030081.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae INDRE 91/1]
 gi|262169328|ref|ZP_06037020.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae RC27]
 gi|262192385|ref|ZP_06050538.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae CT 5369-93]
 gi|298498550|ref|ZP_07008357.1| exsB protein [Vibrio cholerae MAK 757]
 gi|81545006|sp|Q9KS93|QUEC_VIBCH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|172047686|sp|A5F8G4|QUEC_VIBC3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764389|sp|C3LM61|QUEC_VIBCM RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|9655860|gb|AAF94524.1| exsB protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121629186|gb|EAX61626.1| exsB protein [Vibrio cholerae V52]
 gi|126510106|gb|EAZ72700.1| exsB protein [Vibrio cholerae NCTC 8457]
 gi|126521166|gb|EAZ78389.1| exsB protein [Vibrio cholerae B33]
 gi|146315091|gb|ABQ19630.1| exsB protein [Vibrio cholerae O395]
 gi|227009425|gb|ACP05637.1| exsB protein [Vibrio cholerae M66-2]
 gi|227013283|gb|ACP09493.1| exsB protein [Vibrio cholerae O395]
 gi|229345110|gb|EEO10084.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae RC9]
 gi|229351242|gb|EEO16183.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae B33]
 gi|229357276|gb|EEO22193.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae BX 330286]
 gi|229370712|gb|ACQ61135.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae MJ-1236]
 gi|254844193|gb|EET22607.1| exsB protein [Vibrio cholerae MO10]
 gi|255736828|gb|EET92225.1| queuosine Biosynthesis QueC ATPase [Vibrio cholera CIRS 101]
 gi|262022141|gb|EEY40850.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae RC27]
 gi|262029154|gb|EEY47806.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae INDRE 91/1]
 gi|262031738|gb|EEY50323.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae CT 5369-93]
 gi|297542883|gb|EFH78933.1| exsB protein [Vibrio cholerae MAK 757]
          Length = 231

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|315636879|ref|ZP_07892103.1| GMP synthase [Arcobacter butzleri JV22]
 gi|315478709|gb|EFU69418.1| GMP synthase [Arcobacter butzleri JV22]
          Length = 511

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 23/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L AVSGG DS  +   L   + ++         + VD+  LR     E  
Sbjct: 209 IQDKVGNKKVLCAVSGGVDSSVVATLLAEAIGEQVIP------VFVDNGLLRAN---ERE 259

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEHAKTI-NATLI 122
            V  +     +    V    +           E +  +            AK       +
Sbjct: 260 QVETMFKSRGVNLITVDASETFLSKLAGVTDPEKKRKIIGETFIEVFDVEAKKHSGIEFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ D + ++    +  P     ++++R+  L
Sbjct: 320 AQGTLYTDVIESVSVKGPSKTIKSHHNVGGLPDWMKFE----LIEPLREIFKDEVRALGL 375

Query: 183 QRNIS 187
           +  + 
Sbjct: 376 ELGLP 380


>gi|262278275|ref|ZP_06056060.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258626|gb|EEY77359.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus
           RUH2202]
          Length = 377

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 42/198 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--------DEVRY 72
            ++V +SGG DS      L           +K           E           +++  
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNW---------EEDDGTEYCTAMEDLAD 54

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
              V  ++ I     ++                AA R          E ++    +HA T
Sbjct: 55  AQAVADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAIT 114

Query: 117 INATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           + A  I T H    + ET        Y    R           +      ++N  +  P 
Sbjct: 115 LGADFIATGHYAR-RGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLF-PV 172

Query: 170 LRCRREDIRSFLLQRNIS 187
               + ++R    + +++
Sbjct: 173 GEIEKPEVRRIAEELDLA 190


>gi|195443094|ref|XP_002069274.1| GK21111 [Drosophila willistoni]
 gi|194165359|gb|EDW80260.1| GK21111 [Drosophila willistoni]
          Length = 684

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E +R +++  V    +L+ VSGG DS      L      R+    +  A+ VD+
Sbjct: 211 MGSRKDECIR-YIQEKVGSNKVLLLVSGGVDSSVCAALL-----RRALHPGQIIAVHVDN 264

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVS 88
              R+    E   V      + I   V  
Sbjct: 265 GFMRQN---ESEKVERSLRDIGIDLIVRK 290


>gi|157737167|ref|YP_001489850.1| GMP synthase [Arcobacter butzleri RM4018]
 gi|226738379|sp|A8ETA7|GUAA_ARCB4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157699021|gb|ABV67181.1| GMP synthase [Arcobacter butzleri RM4018]
          Length = 511

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 23/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L AVSGG DS  +   L   + ++         + VD+  LR     E  
Sbjct: 209 IQDKVGNKKVLCAVSGGVDSSVVATLLAEAIGEQVIP------VFVDNGLLRAN---ERE 259

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEHAKTI-NATLI 122
            V  +     +    V    +           E +  +            AK       +
Sbjct: 260 QVETMFKSRGVNLITVDASETFLSKLAGVTDPEKKRKIIGETFIEVFDVEAKKHSGIEFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V ++      +    + G+ D + ++    +  P     ++++R+  L
Sbjct: 320 AQGTLYTDVIESVSVKGPSKTIKSHHNVGGLPDWMKFE----LIEPLREIFKDEVRALGL 375

Query: 183 QRNIS 187
           +  + 
Sbjct: 376 ELGLP 380


>gi|115437102|ref|XP_001217726.1| GMP synthase [Aspergillus terreus NIH2624]
 gi|114188541|gb|EAU30241.1| GMP synthase [Aspergillus terreus NIH2624]
          Length = 542

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 67/197 (34%), Gaps = 33/197 (16%)

Query: 13  VRSLVYPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRETAKDEV 70
           +R LV    +++ AVSGG DS      + + + DR      F AI +D  C+R     E 
Sbjct: 224 IRELVGERALVLGAVSGGVDSTVGAALMKAAIGDR------FKAILIDNGCMRLN---EC 274

Query: 71  RYVSD-VCSRLRIAHSVVSWKN---------SKPQTG-----------LMAAAREARYAL 109
             V   +   L I  +VV   +         S P+                 A       
Sbjct: 275 EQVKQTLGEHLGINLTVVDAGDLFLGRLAGVSDPEKKRKIIGSTFIDLFEQEAIRIEKEA 334

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
                 +      +    + D +E++  R      +    + G+ + ++    L +  P 
Sbjct: 335 -ENTPNSGKVEWFLQGTLYPDVIESLSFRGPSATIKTHHNVGGLPERMMNGQGLRLIEPL 393

Query: 170 LRCRREDIRSFLLQRNI 186
               ++++R+   Q  I
Sbjct: 394 RLLFKDEVRAIGRQLGI 410


>gi|78188235|ref|YP_378573.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium chlorochromatii
           CaD3]
 gi|123580466|sp|Q3ATZ5|MNMA_CHLCH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78170434|gb|ABB27530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chlorobium chlorochromatii CaD3]
          Length = 359

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 54/197 (27%), Gaps = 44/197 (22%)

Query: 19  PAHILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           P HILV +SGG DS     LL+              + +A+     LR     +  Y   
Sbjct: 4   PHHILVGISGGVDSAVATCLLV----------QQGYRVTAV----NLRLLDTLDAPYAEP 49

Query: 76  VCS----------RLRIAHSVVSWKNSKPQT-----GLMAAA-----------REARYAL 109
                           I    ++   +              A           R+ ++A 
Sbjct: 50  TLQPSSLVVSDHPDYHIPLFSLNLSRTFRDEVMRYFNAEYLAGRTPNPCMVCNRQVKWAG 109

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           +   A+ I A  I T H  +        R  +    +      +      DL   +  P 
Sbjct: 110 LRHAAELIGANAIATGHYANRAFSDGRYRLYKGADSQKDQSYFLWMLSQKDLAHTLL-PL 168

Query: 170 LRCRREDIRSFLLQRNI 186
               + ++R       +
Sbjct: 169 GGLTKPEVRELAKNFGV 185


>gi|24374803|ref|NP_718846.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella oneidensis MR-1]
 gi|44887962|sp|Q8EC52|GUAA_SHEON RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|24349480|gb|AAN56290.1|AE015766_6 GMP synthase [Shewanella oneidensis MR-1]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + + LH  +        K + + VD+  L
Sbjct: 212 SIIEDAIERLKKQVGDDEVILGLSGGVDSSVVAMLLHRAIGK------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SE 112
           R     E + V +       +    V  +N         A  EA+  +I          E
Sbjct: 266 RLN---EAKQVMEMFGDHFGLNIVHVDAENRFLDALKGEADPEAKRKIIGRVFVEIFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K +NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 AKKCVNAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|326381906|ref|ZP_08203599.1| GMP synthase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199332|gb|EGD56513.1| GMP synthase [Gordonia neofelifaecis NRRL B-59395]
          Length = 527

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 75/202 (37%), Gaps = 36/202 (17%)

Query: 7   ESVRFFVRSLVYPAHILV-AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           E++   VR+ V    + +  +SGG DS     A+ + L  R+ G  + + + VDH L R 
Sbjct: 209 EALIADVRAQVGDDGLAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRA 262

Query: 65  TAKDEVR--YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
             +++V+  +V+   +RL      V  ++         S P+T      RE   +     
Sbjct: 263 GEREQVQTDFVAATGARL----VTVDAEDVFLGHLDGVSDPETKRKIIGREFIRSFEGAV 318

Query: 114 AKTIN--------ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           ++ +            ++    + D +E+             +        +  DL   +
Sbjct: 319 SEVLGDQAAAGKKVDFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLEFKL 373

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     ++++R+   +  + 
Sbjct: 374 VEPLRLLFKDEVRAVGRELGLP 395


>gi|320667595|gb|EFX34510.1| GMP synthase [Escherichia coli O157:H7 str. LSU-61]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           I            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHIPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|299141020|ref|ZP_07034158.1| GMP synthase [Prevotella oris C735]
 gi|298577986|gb|EFI49854.1| GMP synthase [Prevotella oris C735]
          Length = 514

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    ++  +    +++ +SGG DS      L+  + +        + I VDH  L
Sbjct: 198 SFVESTVADLKKQLGNDRVILGLSGGVDSSVCATLLNKAIGN------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|281424232|ref|ZP_06255145.1| GMP synthase [Prevotella oris F0302]
 gi|281401501|gb|EFB32332.1| GMP synthase [Prevotella oris F0302]
          Length = 514

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    ++  +    +++ +SGG DS      L+  + +        + I VDH  L
Sbjct: 198 SFVESTVADLKKQLGNDRVILGLSGGVDSSVCATLLNKAIGN------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|229489580|ref|ZP_04383443.1| GMP synthase [Rhodococcus erythropolis SK121]
 gi|229323677|gb|EEN89435.1| GMP synthase [Rhodococcus erythropolis SK121]
          Length = 523

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAK--DE 69
           VR  V   H +  +SGG DS     A+ + L  R+ G  + + + VDH L R   +   E
Sbjct: 212 VREQVGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLMRAGERTQVE 265

Query: 70  VRYVSDVCSRLRIAHSVVSWK--------NSKPQTGLMAAAREARYALISEHAKTIN--- 118
             +V+   +RL    +V +           + P+       RE   +     +  +    
Sbjct: 266 QDFVAATGARL---ITVDAADTFIGELAGVTDPEAKRKIIGREFIRSFEGAVSDVLGENA 322

Query: 119 -----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                   ++    + D +E+             +        +  DL   +  P     
Sbjct: 323 SHGATVDFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLQFKLVEPLRLLF 377

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 378 KDEVRAVGRELGLP 391


>gi|227503892|ref|ZP_03933941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium striatum ATCC 6940]
 gi|227199515|gb|EEI79563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium striatum ATCC 6940]
          Length = 355

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 54/187 (28%), Gaps = 41/187 (21%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H----CLRETAK-----DEVRYVSDV 76
           SGG DS           +           + +  H      RE A+     ++      +
Sbjct: 2   SGGVDSSV-------AAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 54

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMA----AAR------------EARYALISEHAKTINAT 120
           C +L I   V  +     +  +       AR            + ++  + +    +   
Sbjct: 55  CDKLGIPFYVWDFSEQFKEEVIGDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFD 114

Query: 121 LIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + T H  T DD     YMR  +D  +    + G+      +   +   P     +  IR
Sbjct: 115 AVATGHYATLDDAG---YMRRSKDENKDQSYVLGVISAEELEHCYF---PIGDTPKPQIR 168

Query: 179 SFLLQRN 185
               +  
Sbjct: 169 EEAARHG 175


>gi|189462149|ref|ZP_03010934.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136]
 gi|189431122|gb|EDV00107.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136]
          Length = 378

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 23/194 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           F  + + P +I   +SGG DS   +  L           IK    + +  L  TA++++ 
Sbjct: 18  FATNKISPMNIAALISGGVDSAVAVHLLCEQGYKPDLFYIKIGMDTDNE-LSCTAEEDIE 76

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKTIN 118
             +    R  +   ++  +       +     + R                     +   
Sbjct: 77  LATATARRYGLQLEIIDLQKEYWDQVVAYTIEKVRNGFTPNPDVMCNKLIKFGCFEQKAG 136

Query: 119 --ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---PFLRCR 173
                I T H       T  +  +   A     +    D +     L +S+   P     
Sbjct: 137 YAYDKIATGHYAS----TCELNGKTWLATAKDAIKDQTDFLAQINYLQVSKLLFPLGGYM 192

Query: 174 REDIRSFLLQRNIS 187
           +++IR    Q  + 
Sbjct: 193 KKEIRHIAAQAKLP 206


>gi|114320176|ref|YP_741859.1| GMP synthase [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312013|sp|Q0A9W8|GUAA_ALHEH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|114226570|gb|ABI56369.1| GMP synthase (glutamine-hydrolyzing) [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 64/187 (34%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V    +L+ +SGG DS  +   LH  + D      + + + VD+  LR+   D+V 
Sbjct: 221 VRRQVGGDKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRKDEGDQVM 274

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREAR-------YALISEHAKTINAT 120
             +     + +  +V+             G+    R+ +            + A+     
Sbjct: 275 --ATFARHMGV--NVIRVDAEARFLEALKGVDDPERKRKIIGNMFIEVFDEQAARLTEVD 330

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+             +        +  D+ L +  P     ++++R  
Sbjct: 331 WLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPEDMTLKLVEPLRELFKDEVRRI 387

Query: 181 LLQRNIS 187
            L+  + 
Sbjct: 388 GLELGLP 394


>gi|297578951|ref|ZP_06940879.1| exsB protein [Vibrio cholerae RC385]
 gi|297536545|gb|EFH75378.1| exsB protein [Vibrio cholerae RC385]
          Length = 231

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|226360638|ref|YP_002778416.1| sulfate adenylyltransferase subunit 2 [Rhodococcus opacus B4]
 gi|226239123|dbj|BAH49471.1| sulfate adenylyltransferase subunit 2 [Rhodococcus opacus B4]
          Length = 305

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLR 63
           E+V  F   +  +   +L+  SGG DS+ +L              + F+ + VD  H   
Sbjct: 18  EAVHIFREVAATFERPVLL-FSGGKDSVVMLHVAAKAF---WPAPLPFAVMHVDTGHNF- 72

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN--SKPQTGLMAAAREARYA----LISEHAKTI 117
               + + +      RL +   V S ++     +    +  R +R       +    +  
Sbjct: 73  ---DEVIEFRDRTVERLGLRMVVSSVQDDIDAGRVSEESGPRASRNRLQTTALLRGIREN 129

Query: 118 NATLIMTAHTFD 129
               I      D
Sbjct: 130 GFDAIFGGARRD 141


>gi|157738264|ref|YP_001490948.1| ExsB family transcriptional regulator [Arcobacter butzleri RM4018]
 gi|189038892|sp|A8EWF5|QUEC_ARCB4 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|157700118|gb|ABV68278.1| transcriptional regulator, ExsB family [Arcobacter butzleri RM4018]
          Length = 228

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 47/191 (24%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL----- 80
           +SGG DS      L S ++ +     +  A+  ++  R     E++   D+C+ L     
Sbjct: 13  LSGGMDST-----LSSYIAKKD--GFEIIAVHFNYGQRTQ-NRELKAFRDICNELDIKSK 64

Query: 81  ---RIAHSVVSWKNS-------KPQTGLMAAA-------REARYALI-SEHAKTINATLI 122
               I        N+        P  GL A         R   +  I +  A+   AT +
Sbjct: 65  YEIDIPFFTQIGANALTDMSIDVPTGGLEAGVPITYVPFRNGIFLAITAAIAEKEGATAM 124

Query: 123 MTAHTFD------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                 +      D  E      ++           +      D  + I  P +   +  
Sbjct: 125 YIGVVQEDSSGYPDCTEEFIQDMKK----------AINQGTKEDTKIEIITPLVHLSKAQ 174

Query: 177 IRSFLLQRNIS 187
           I    ++ N+ 
Sbjct: 175 IVQEAIKLNVP 185


>gi|312135395|ref|YP_004002733.1| PP-loop domain-containing protein [Caldicellulosiruptor owensensis
           OL]
 gi|311775446|gb|ADQ04933.1| PP-loop domain protein [Caldicellulosiruptor owensensis OL]
          Length = 289

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 11/88 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E ++  ++       +LVA SGG DS  LL     VL D++      S       L 
Sbjct: 30  EKLERLKEIIKGY---ESVLVAFSGGVDSTFLLKVSFDVLGDKAIAVFSSSV------LS 80

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN 91
              + E    + +   +     V+    
Sbjct: 81  PQREKEDA--ARLAKDIGAKLIVIERDV 106


>gi|299769236|ref|YP_003731262.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1]
 gi|298699324|gb|ADI89889.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1]
          Length = 377

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 40/197 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            ++V +SGG DS      L           +K           E        A +++   
Sbjct: 4   RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMK--------NWEEDDGTEYCTAMEDLADA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKTI 117
             V  ++ I     ++                AA R          E ++    +HA T+
Sbjct: 56  QAVADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTL 115

Query: 118 NATLIMTAHTFDDQLET-------VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  I T H    + ET        Y    R           +      ++N  +  P  
Sbjct: 116 GADFIATGHYAR-RGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLF-PVG 173

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R    + +++
Sbjct: 174 EIEKPEVRRIAEELDLA 190


>gi|20804216|emb|CAD31242.1| HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti R7A]
          Length = 232

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS+ L    H V +++         +S D+  R   K E+ + +    RL + H 
Sbjct: 7   CSGGLDSVSLA---HKVATEQKL----IGLLSFDYGQRH--KKELGFAAICAKRLGVPHQ 57

Query: 86  VVSWKNSKPQTGLMA 100
           +V  ++        A
Sbjct: 58  IVDIRDVGRNLSGSA 72


>gi|296242941|ref|YP_003650428.1| phosphoadenosine phosphosulfate reductase [Thermosphaera aggregans
           DSM 11486]
 gi|296095525|gb|ADG91476.1| phosphoadenosine phosphosulfate reductase [Thermosphaera aggregans
           DSM 11486]
          Length = 424

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
              +  ++   RS+     + V+ SGG+DS   L  +   L     G  +  A+  D  L
Sbjct: 194 REAVGFIKKAYRSIQGSGRVAVSFSGGADSTATLSLVAQAL-----GPGRVVAVYSDTGL 248

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVS 88
               +   + Y   V SRL +   V+ 
Sbjct: 249 EFPES---LSYAERVASRLGVELVVLE 272


>gi|167759430|ref|ZP_02431557.1| hypothetical protein CLOSCI_01777 [Clostridium scindens ATCC 35704]
 gi|167662987|gb|EDS07117.1| hypothetical protein CLOSCI_01777 [Clostridium scindens ATCC 35704]
          Length = 408

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 58/207 (28%), Gaps = 49/207 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--DE------- 69
              +++A SGG D+         +   +     +     VD    E     +E       
Sbjct: 2   KEKVVLAYSGGLDTTA------IIPWLKENFDYEVICCCVDCGQGEELDGLEERAKLSGA 55

Query: 70  -----VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                   V D C    +                 + AR A    + E A+   A+ I  
Sbjct: 56  SKLYIEDIVDDFCDNYVVPCVQAHAVYENKYLLGTSMARPAIAKKLVEVARKEGASAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC------RRED 176
             T   +DQ+               +G+  +        +L I  P+          RE+
Sbjct: 116 GATGKGNDQI------------RFELGIKALAP------DLKIIAPWRMTDVWTMNSREE 157

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVR 203
             ++  Q  I    D S     + R R
Sbjct: 158 EIAYCKQHGIDLPFDAS---HSYSRDR 181


>gi|145589976|ref|YP_001156573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|205816900|sp|A4SZU5|MNMA_POLSQ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145048382|gb|ABP35009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 370

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 57/197 (28%), Gaps = 46/197 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD---- 75
             +++ +SGG DS      L     +     +K               D   Y S     
Sbjct: 15  KKVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNW----------EDDDNDEYCSARQDW 64

Query: 76  -----VCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHA 114
                V   + I    V++     +          AA R          E ++    +HA
Sbjct: 65  LDVVSVADMIGIDVEAVNFAAEYRERVFADFLCEYAAGRTPNPDVLCNAEIKFKAFLDHA 124

Query: 115 KTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
            ++ A  I T H         +++   +++     ++   L  +    L      +  P 
Sbjct: 125 MSLGADAIATGHYARVRHEGGRVQ--LLKAVDASKDQSYFLHRLTQQQLSK----VMFPL 178

Query: 170 LRCRREDIRSFLLQRNI 186
               + ++R    Q  +
Sbjct: 179 GEIPKTEVRKIAEQIGL 195


>gi|56696559|ref|YP_166916.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria pomeroyi DSS-3]
 gi|81349989|sp|Q5LST9|MNMA_SILPO RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56678296|gb|AAV94962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria pomeroyi DSS-3]
          Length = 375

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 61/221 (27%), Gaps = 52/221 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 12  PSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLY----DHG--AALAKKGACCAGI 65

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V       H V+ ++N      +   A                   ++  + E
Sbjct: 66  DIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 125

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            A+ + A  + T H             QR     G  L    D          +   +  
Sbjct: 126 TARDLEADCMATGH-----------YIQRKMGPNGPELHCAEDANRDQSYFLFSTTPEQL 174

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P      ++  R    Q  ++  + P + D  F   
Sbjct: 175 DYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPN 215


>gi|328473137|gb|EGF43985.1| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus 10329]
          Length = 374

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            + A  I   H
Sbjct: 119 VLEADYIAMGH 129


>gi|227355887|ref|ZP_03840279.1| GMP synthase [Proteus mirabilis ATCC 29906]
 gi|227163875|gb|EEI48777.1| GMP synthase [Proteus mirabilis ATCC 29906]
          Length = 536

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 23/194 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     ++  +   H+++A+SGG DS    + L+  +  R       + + VD+  LR 
Sbjct: 225 IEDTVARLKQQIGDDHVILALSGGVDSSVTALLLNRAIGKR------LTCVFVDNGLLRL 278

Query: 65  TAKDEVRYVSDVCS---RLRIAH---SVVSWKNSKPQTGLMAAAREARYALI----SEHA 114
               E   V  +      L I H           K +       +   +  I     E  
Sbjct: 279 N---EAEQVMAMFKGKFDLNIIHVEAEDRFLTALKGENDPEKKRKIIGHTFIEIFDEEAV 335

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K      +     + D +E+    + + +  K          +  D+ L +  P     +
Sbjct: 336 KLPQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPEDMKLGLVEPLKELFK 392

Query: 175 EDIRSFLLQRNISW 188
           +++R   L+  + +
Sbjct: 393 DEVRKIGLELGLPY 406


>gi|118574280|sp|Q1IHK6|QUEC_ACIBL RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
          Length = 237

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
          V+       ++V +SGG DS        + L+ R +G     A+ V +  R  A+++  +
Sbjct: 3  VQRGDTGKAVVV-LSGGMDSTV-----CATLAVREYGAENIGALHVSYGQRTAAREKQAF 56

Query: 73 VSDVCSRLRI 82
           + V  RL I
Sbjct: 57 AA-VAERLGI 65


>gi|145588460|ref|YP_001155057.1| exsB protein [Polynucleobacter necessarius subsp. asymbioticus
          QLW-P1DMWA-1]
 gi|189038942|sp|A4SVH9|QUEC_POLSQ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|145046866|gb|ABP33493.1| preQ(0) biosynthesis protein QueC [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
          Length = 246

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 12/89 (13%)

Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
             R    PA IL   SGG DS  +L     +            A+SV +  R ++  E+
Sbjct: 11 LAPRKDGAPAVIL--FSGGLDSTTVLALAKDL-------GYTPYALSVGYGQRHSS--EL 59

Query: 71 RYVSDVCSRLRIA-HSVVSWKNSKPQTGL 98
               +  ++ +A H VV+   ++     
Sbjct: 60 AAAKHIAKQIGVARHEVVNLDLTRFGGSA 88


>gi|147920090|ref|YP_686151.1| GMP synthase subunit B [uncultured methanogenic archaeon RC-I]
 gi|121690424|sp|Q0W468|GUAAB_UNCMA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|110621547|emb|CAJ36825.1| GMP synthase, glutamine-hydrolyzing [uncultured methanogenic
           archaeon RC-I]
          Length = 305

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 19/179 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V     L+A+SGG DS    I  H  L DR         + VD  L R+   D +R
Sbjct: 15  IKLKVGNGKALIALSGGVDSSVCAILAHRALGDRLIP------VYVDTGLMRKGETDRIR 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR---EARYALISEHAKTINATLIMTAHTF 128
            +    +   +  S   +   K  T   A  +   E    +  +  K +    ++    +
Sbjct: 69  EIFKFMNPHVVDASDRFFNALKGVTDPEAKRKIVGEMFIRVFEDVVKGLEVDFLIQGTIY 128

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
            D++E           +    + G+     +     I  P     ++++R       + 
Sbjct: 129 PDRIE------SEGGIKSHHNVGGLPSVTEFKG---IIEPLQDLYKDEVREVARALPLP 178


>gi|153838264|ref|ZP_01990931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ3810]
 gi|161511058|ref|NP_797509.2| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364461|ref|ZP_05777086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus K5030]
 gi|260877061|ref|ZP_05889416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AN-5034]
 gi|260896850|ref|ZP_05905346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus Peru-466]
 gi|260902426|ref|ZP_05910821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ4037]
 gi|32130287|sp|Q87QL9|MNMA_VIBPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|149748319|gb|EDM59178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ3810]
 gi|308087006|gb|EFO36701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus Peru-466]
 gi|308093683|gb|EFO43378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AN-5034]
 gi|308110639|gb|EFO48179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus AQ4037]
 gi|308114601|gb|EFO52141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio parahaemolyticus K5030]
          Length = 374

 Score = 44.1 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            + A  I   H
Sbjct: 119 VLEADYIAMGH 129


>gi|320449532|ref|YP_004201628.1| archaeosine biosynthesis protein QueC [Thermus scotoductus SA-01]
 gi|320149701|gb|ADW21079.1| archaeosine biosynthesis protein QueC [Thermus scotoductus SA-01]
          Length = 206

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 32/181 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           LV +SGG DS  LL  L      +  G    +A+ +D     T K+  R    V SRL +
Sbjct: 4   LVMLSGGLDSSVLLYKLK-----KQDGLEGLAAVYLDLGTPPTQKEW-RAAEKVASRLGV 57

Query: 83  AHS---VVSWKNSKPQTGLMAAAREARYALISEH-------------AKTINATLIMTAH 126
           A     V  ++           A   R ++ +               A  +    +    
Sbjct: 58  AIYRNRVPHFELGDRLFSPPELAFPGRESIQAGWTDPCTMTPITGSLAAKMGVEEVYLGV 117

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             DD               +      +    L    + +  P     ++++ +   +  +
Sbjct: 118 IKDDFA----------SHPRLEAYLALVKKFLEFNQVRLKMPLSGLTKQEVVALGHELGV 167

Query: 187 S 187
            
Sbjct: 168 P 168


>gi|254465357|ref|ZP_05078768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium Y4I]
 gi|206686265|gb|EDZ46747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacterales bacterium Y4I]
          Length = 381

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 61/218 (27%), Gaps = 52/218 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLY----DHG--AALAKKGACCAGI 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V       H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            AK + A  + T H             QR     G  L    D          +   +  
Sbjct: 132 TAKDLEADCMATGH-----------YIQRKMGPNGPELHSAEDANRDQSYFLFSTTPEQL 180

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
            ++  P      ++  R    Q  ++  + P + D  F
Sbjct: 181 DYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICF 218


>gi|328957187|ref|YP_004374573.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4]
 gi|328673511|gb|AEB29557.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4]
          Length = 362

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 61/190 (32%), Gaps = 43/190 (22%)

Query: 27  SGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           SGG DS    + L         +         +F   +        A ++   V+ V ++
Sbjct: 2   SGGVDSSVTALVLKQQGYDVVGIFMKNWDDTDEFGVCT--------ATEDYNDVALVANQ 53

Query: 80  LRIAHSVVSWKNSKPQT----GLMA--AAR----------EARYALISEHAKTINATLIM 123
           + I +  ++++           L      R          E ++    ++A  + A  + 
Sbjct: 54  IGIPYYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYAIELGADYVA 113

Query: 124 TAHTFDDQLE------TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T H    Q+E      T  +R   +  ++   L+ +    L         P    ++ ++
Sbjct: 114 TGHYA--QVERDENGVTHMLRGLDNNKDQTYFLNQLSQEQLAKT----LFPLGGMQKSEV 167

Query: 178 RSFLLQRNIS 187
           R    +  ++
Sbjct: 168 RKIAEEAGLA 177


>gi|305664132|ref|YP_003860420.1| argininosuccinate synthase [Ignisphaera aggregans DSM 17230]
 gi|304378701|gb|ADM28540.1| argininosuccinate synthase [Ignisphaera aggregans DSM 17230]
          Length = 395

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 32/133 (24%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S  L++        R     +   ++VD       +DE+R V      
Sbjct: 2   RVVLAYSGGLDTSTILVLL-------RKKYNAEVITVTVDVGQ----EDELRDVEKRAYE 50

Query: 80  LR-IAHSVVSWKNSKPQTGLMAA-----------------AREARYALISEHAKTINATL 121
           L  I H  +  K    +  +  A                 AR      ++E AK   A  
Sbjct: 51  LGAIKHYTIDAKKEFVEEYIFRAIKANALYEGKYPLGTALARPLIAKKVAEIAKKEGADA 110

Query: 122 IMTAHT--FDDQL 132
           +    T   +DQ+
Sbjct: 111 VAHGCTGKGNDQV 123


>gi|262305999|gb|ACY45592.1| gln amidotransferase [Armillifer armillatus]
          Length = 196

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +++  V    +LV +SGG DS      L+  L        +  A+ +D+  LR   K E 
Sbjct: 36  YIQDTVKDRKVLVFLSGGVDSSVCAALLYKAL-----PPNQIIALHIDNGFLR---KRES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V  +   LR+   VV 
Sbjct: 88  KSVEKMMCDLRLELKVVK 105


>gi|159897370|ref|YP_001543617.1| tRNA-specific 2-thiouridylase MnmA [Herpetosiphon aurantiacus ATCC
           23779]
 gi|205816856|sp|A9AYA7|MNMA_HERA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|159890409|gb|ABX03489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 357

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 68/203 (33%), Gaps = 54/203 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD---EVRYV--- 73
           A I+VA+SGG DS    + L     D        + +++   L E   +   E +     
Sbjct: 2   AKIMVAMSGGVDSSLTAVLLKEQGHD-------VTGVTMH--LWEGDDNGIMESQCCSVE 52

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISE 112
                  VC++  I + V +++    +                    A  R+ ++ ++ E
Sbjct: 53  MTAGARRVCAQYDIPYYVFNYQKDFRKHVIDYFLREYSSGATPNPCLACNRDLKFRVLLE 112

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAE-----KGMGLSGMCDTILY----DLNL 163
            A+ +    + T H         +++      +     +G+ ++     +LY        
Sbjct: 113 RAELLGFDGLATGH---------FVQITGGGEQPYDLRRGIDINKDQSYVLYMLSQRELG 163

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
            +  P     +  +R    +R +
Sbjct: 164 RLHFPLGGFTKPQVRQMARERGL 186


>gi|167646179|ref|YP_001683842.1| GMP synthase [Caulobacter sp. K31]
 gi|167348609|gb|ABZ71344.1| GMP synthase, large subunit [Caulobacter sp. K31]
          Length = 528

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V    ++  +SGG DS    + +H  + D      + + + VD   LR   A   V
Sbjct: 224 IRDQVGTGKVICGLSGGVDSSVAAVLIHEAIGD------QLTCVFVDTGLLRLNEADQVV 277

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
               D      I    V             S P+T       +       E AK   A  
Sbjct: 278 TLFRD---HYNIPLIHVDAGAEFLGALAGVSDPETKRKIIGGKFIDIFDREAAKIDGADF 334

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V   S R      +        +   + L +  P     ++++R+  
Sbjct: 335 LAQGTLYPDVVESV---SARGGPSAVIKSHHNVGGLPDFMKLKLVEPLRELFKDEVRALG 391

Query: 182 LQRNISW 188
           ++  ++ 
Sbjct: 392 VELGLAP 398


>gi|113969579|ref|YP_733372.1| GMP synthase [Shewanella sp. MR-4]
 gi|117919685|ref|YP_868877.1| GMP synthase [Shewanella sp. ANA-3]
 gi|123130599|sp|Q0HKV2|GUAA_SHESM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739734|sp|A0KUK2|GUAA_SHESA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|113884263|gb|ABI38315.1| GMP synthase (glutamine-hydrolyzing) [Shewanella sp. MR-4]
 gi|117612017|gb|ABK47471.1| GMP synthase (glutamine-hydrolyzing) [Shewanella sp. ANA-3]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + + LH  +        K + + VD+  L
Sbjct: 212 SIIEDAIERLKKQVGDDEVILGLSGGVDSSVVAMLLHRAIGK------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SE 112
           R     E + V +       +    V  +N         A  EA+  +I          E
Sbjct: 266 RLN---EAKQVMEMFGDHFGLNIVHVDAENRFLDALKGEADPEAKRKIIGRVFVEIFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K +NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 AKKCVNAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|163846550|ref|YP_001634594.1| GMP synthase [Chloroflexus aurantiacus J-10-fl]
 gi|222524339|ref|YP_002568810.1| GMP synthase [Chloroflexus sp. Y-400-fl]
 gi|163667839|gb|ABY34205.1| GMP synthase, large subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448218|gb|ACM52484.1| GMP synthase, large subunit [Chloroflexus sp. Y-400-fl]
          Length = 513

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 25/196 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E++      +     ++ A+SGG DS    + +H  + DR       + + VD+  LR  
Sbjct: 203 EAIERVKAQVGDHGRVICALSGGVDSAVAALIIHRAIGDR------LTCVFVDNGLLRAG 256

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAK 115
              E   V +       +    V  +            P+        +       E   
Sbjct: 257 ---EAEQVIATFSEHFHVPLIAVDAREEFMTALKGVTDPEQKRKIIGEKFIRIFEREARA 313

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
                 +     + D +E+      +    K          +  D+ L +  P     ++
Sbjct: 314 LAGVEFLAQGTLYPDVIESTAPDRPKAAKIK---THHNVGGLPADMQLKLVEPLRYLFKD 370

Query: 176 DIRSFLLQRNIS--WC 189
           ++R+  LQ  +   W 
Sbjct: 371 EVRAAGLQLGLPETWV 386


>gi|330721692|gb|EGG99696.1| GMP synthase [gamma proteobacterium IMCC2047]
          Length = 413

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 65/196 (33%), Gaps = 27/196 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     VR  V   H+L+ +SGG DS  +   LH  + D      + + + VD+  LR+
Sbjct: 102 IEDAIDTVRKQVGTDHVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRK 155

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTI 117
              D    V D     + +   V+     +               R+       E     
Sbjct: 156 NEGD---QVMDMFGKNMGV--RVIRADAEELFLSRLKGENDPEKKRKIIGNTFIEVFDEE 210

Query: 118 -----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                N   +     + D +E+    + +      +        +  D+ L +  P    
Sbjct: 211 SSKIDNVKWLAQGTIYPDVIES---AAAKTGKAHVIKSHHNVGGLPEDMKLGLVEPLREL 267

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 268 FKDEVRKIGLELGLPY 283


>gi|300123017|emb|CBK24024.2| unnamed protein product [Blastocystis hominis]
 gi|300175673|emb|CBK20984.2| unnamed protein product [Blastocystis hominis]
          Length = 576

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 21/193 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-E 64
           E++      +    H++ AVSGG DS    + L+  +  R      F A+ VD+  LR  
Sbjct: 264 EAIARIRSEVGEEGHVIGAVSGGVDSSVAAVLLNRAIGKR------FHAVLVDNGVLRLN 317

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTI--- 117
            AK+ +  +      L +A +   +             R+        +  E AK I   
Sbjct: 318 EAKEVMERLGAAGIDLHLADASELFLAKLAGVSDPEKKRKIIGTTFIDVFEEEAKKIEQE 377

Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +   ++    + D +E+   R      +    + G+ +    ++ L +  P     ++
Sbjct: 378 VGHVDFLLQGTLYPDVIESTSFRGPSATIKSHHNVGGLKE----NMKLKLIEPLRELFKD 433

Query: 176 DIRSFLLQRNISW 188
           ++R+   +  +  
Sbjct: 434 EVRALGAELGLPH 446


>gi|262306049|gb|ACY45617.1| gln amidotransferase [Hanseniella sp. 'Han2']
          Length = 197

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          ++R +V    +L+ VSGG DS      LH  L +      +   + ++
Sbjct: 36 YIRQVVGDHKVLMLVSGGVDSTVCAALLHKALKED-----QVIVLHIN 78


>gi|237732484|ref|ZP_04562965.1| bifunctional GMP synthase/glutamine amidotransferase [Citrobacter
           sp. 30_2]
 gi|226908023|gb|EEH93941.1| bifunctional GMP synthase/glutamine amidotransferase [Citrobacter
           sp. 30_2]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGNDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALI-----SE 112
           R     E + V D       +    V     + ++        A R+    +       E
Sbjct: 266 RLN---EAQQVMDMFGDHFGLNIVHVEGEKRFLDALKGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|172058908|ref|YP_001815368.1| exsB protein [Exiguobacterium sibiricum 255-15]
 gi|254764347|sp|B1YFM6|QUEC_EXIS2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|171991429|gb|ACB62351.1| exsB protein [Exiguobacterium sibiricum 255-15]
          Length = 218

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 12/65 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  AL            +   ++ ++  R  A+ +V    ++ S L
Sbjct: 7  LVV-FSGGQDSTTCLFQALADYS--------EVEVVTFNYGQRHAAELDVA--REITSEL 55

Query: 81 RIAHS 85
           + H 
Sbjct: 56 GVKHH 60


>gi|124004150|ref|ZP_01688996.1| GMP synthase, C-terminal domain [Microscilla marina ATCC 23134]
 gi|123990220|gb|EAY29719.1| GMP synthase, C-terminal domain [Microscilla marina ATCC 23134]
          Length = 518

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE+    +++ +    +++ +SGG DS    + LH  +           AI VD+  L
Sbjct: 207 SFIETTVAELKAQIGNDKVVLGLSGGVDSSVAAVLLHQAIGK------NLYAIFVDNGLL 260

Query: 63  RETAKDEV 70
           R+   +EV
Sbjct: 261 RKDEFEEV 268


>gi|126179843|ref|YP_001047808.1| GMP synthase subunit B [Methanoculleus marisnigri JR1]
 gi|166215314|sp|A3CWS6|GUAAB_METMJ RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|125862637|gb|ABN57826.1| GMP synthase (glutamine-hydrolyzing) [Methanoculleus marisnigri
           JR1]
          Length = 305

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 29/193 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             I+     +R       +++A+SGG DS        + L+ R+ G  +   I VD  L 
Sbjct: 6   KFIDQAVREIRDAAGEDKVVMALSGGVDSSV-----CAALATRAIGD-QLVPIYVDTGLM 59

Query: 63  RETAKDEVR--------YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
           R+   D +R         V D           ++      +      A+  R  +    A
Sbjct: 60  RKGETDRIRSLFADANLRVVDAADEF---FEALAGIVDPEEKRKAIGAKFIR--IFEREA 114

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   AT+++    + D++E           +    + GM   I +     +  P     +
Sbjct: 115 KRTGATMLLQGTIYPDRIE------SEGGIKSHHNVGGMPLDIEFKG---VIEPLADLYK 165

Query: 175 EDIRSFLLQRNIS 187
           +++R       + 
Sbjct: 166 DEVREVAGGLGLP 178


>gi|28210754|ref|NP_781698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium tetani E88]
 gi|75542643|sp|Q896F5|MNMA1_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|28203192|gb|AAO35635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium tetani E88]
          Length = 362

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 56/187 (29%), Gaps = 33/187 (17%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVCSRL 80
            +SGG DS      L     D     +K           + +    +D ++   +VC  L
Sbjct: 12  GMSGGVDSSVTAYLLKEQGYDVIGMTMKVFP----GNYHDGSKEKIEDIMKSAKEVCDFL 67

Query: 81  RIAHSVVSW------KNSKPQTGLMAAAR----------EARYALISEHAKTINATLIMT 124
            I    V        K + P        R            ++      A  + A  I T
Sbjct: 68  EIPFVEVDLIEEFNKKVATPFMQDYIEGRTPNPCVYCNKHIKFDAFLNKAIELGADYIAT 127

Query: 125 AHTFDDQLE----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            H  +  +E    T+  R++ +  ++   L  +    L      I  P     +E IR  
Sbjct: 128 GHYAN-IIEKDGRTLIYRAEDENKDQTYMLYNLKQHQLK----HILMPCGDYNKEQIREI 182

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 183 AKKIGLK 189


>gi|86136123|ref|ZP_01054702.1| ExsB [Roseobacter sp. MED193]
 gi|85826997|gb|EAQ47193.1| ExsB [Roseobacter sp. MED193]
          Length = 233

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 36/186 (19%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS+ L        ++    ++    +S D+  R   + E+ +      RL +   
Sbjct: 7   CSGGLDSVSLAHI---TANEHQLTRL----VSFDYGQRH--RKEIYFAEAAAKRLGVPFH 57

Query: 86  VVSWKNSK--------------PQTGLMAAAREA-----RYALI----SEHAKTINATLI 122
           ++  +                 P          A     R A++       A       +
Sbjct: 58  LIDMRGVGASLTGSALTDDIDVPDGHYEEETMRATVVPNRNAIMLSIGFGIAAAKGDEAV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            TA    D          R    +            Y   + +  PF+   + +I     
Sbjct: 118 ATAVHGGDH---FIYPDCRPSFTRAFDAMQQAALDGYAE-VRLHTPFVEHSKAEIVRQGA 173

Query: 183 QRNISW 188
           + +  +
Sbjct: 174 KHDTPF 179


>gi|187731505|ref|YP_001881298.1| GMP synthase [Shigella boydii CDC 3083-94]
 gi|226739738|sp|B2TXT2|GUAA_SHIB3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|187428497|gb|ACD07771.1| GMP synthase (glutamine-hydrolyzing) [Shigella boydii CDC 3083-94]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLIEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|15842990|ref|NP_338027.1| GMP synthase [Mycobacterium tuberculosis CDC1551]
 gi|254233998|ref|ZP_04927323.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis C]
 gi|13883330|gb|AAK47841.1| GMP synthase [Mycobacterium tuberculosis CDC1551]
 gi|124599527|gb|EAY58631.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis C]
 gi|323717883|gb|EGB27072.1| GMP synthase guaA [Mycobacterium tuberculosis CDC1551A]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   + +V+
Sbjct: 219 VRTQIGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGERAQVQ 272

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTIN---A 119
              D  +        V             S P+       R+   A        ++   A
Sbjct: 273 --RDFVAATGANLVTVDAAETFLEALSGVSAPEGKRKIIGRQFIRAFEGAVRDVLDGKTA 330

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 331 EFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDLKFTLVEPLRLLFKDEVRA 385

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 386 VGRELGLP 393


>gi|308178041|ref|YP_003917447.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter arilaitensis
           Re117]
 gi|307745504|emb|CBT76476.1| GMP synthase (glutamine-hydrolyzing) [Arthrobacter arilaitensis
           Re117]
          Length = 528

 Score = 44.1 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 70/191 (36%), Gaps = 27/191 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V     +  +SGG DS     A+ + L  R+ G  + + + V+H  LRE   ++V 
Sbjct: 217 IRAQVGTGKAICGLSGGVDS-----AVAAALVQRAIGD-QLTCVFVNHGLLREGEAEQVE 270

Query: 72  --YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHA--------KT 116
             +V+   ++L IA     +  +      P+T      RE   A  +  A        + 
Sbjct: 271 KDFVASTGAKLYIADERERFLTALDGVTDPETKRKIIGREFIRAFEAAEAAIIAEAASEG 330

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E+             +        +  DL   +  P     +++
Sbjct: 331 EPVKFLVQGTLYPDIVES-----GGGEGTSNIKSHHNVGGLPEDLQFELVEPLRTLFKDE 385

Query: 177 IRSFLLQRNIS 187
           +R+   +  + 
Sbjct: 386 VRAVGRELGLP 396


>gi|289555672|ref|ZP_06444882.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 605]
 gi|289440304|gb|EFD22797.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 605]
          Length = 524

 Score = 44.1 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   + +V+
Sbjct: 218 VRTQIGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGERAQVQ 271

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTIN---A 119
              D  +        V             S P+       R+   A        ++   A
Sbjct: 272 --RDFVAATGANLVTVDAAETFLEALSGVSAPEGKRKIIGRQFIRAFEGAVRDVLDGKTA 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 330 EFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDLKFTLVEPLRLLFKDEVRA 384

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 385 VGRELGLP 392


>gi|225024394|ref|ZP_03713586.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC
           23834]
 gi|224942775|gb|EEG23984.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC
           23834]
          Length = 368

 Score = 44.1 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 51/203 (25%), Gaps = 48/203 (23%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDE 69
           +  P +I+V +SGG DS      L                    H +R          D 
Sbjct: 1   MPTPQNIIVGLSGGVDSSVTAHLLKQQG----------------HQVRGVFMQNWEDDDN 44

Query: 70  VRYVS----------------------DVCSRL--RIAHSVVSWKNSKPQTGLMAAA-RE 104
             Y S                      +  ++   ++    +    +            E
Sbjct: 45  DEYCSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYQAGRTPNPDVLCNAE 104

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
            ++    ++A    A  I T H    ++ +      +           +     + L   
Sbjct: 105 IKFKCFLDYAVEQGAEAIATGHYARKEVHSGKHYLLKGLDANKDQSYFLYRLQPHQLERA 164

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     + ++R    +  + 
Sbjct: 165 LF-PLGHLEKPEVRRIAAEAGLP 186


>gi|218708651|ref|YP_002416272.1| GMP synthase [Vibrio splendidus LGP32]
 gi|254800125|sp|B7VJU8|GUAA_VIBSL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218321670|emb|CAV17624.1| GMP synthase [Vibrio splendidus LGP32]
          Length = 517

 Score = 44.1 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + +  H  + D      K + + VD+  L
Sbjct: 204 SIIEDAVARIKEQVGDDEVILGLSGGVDSSVVAMLAHRAIGD------KLTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +    +  +    V  ++         A  EA+  +I           
Sbjct: 258 RLN---EGEQVMEMFGDQFGLNIIKVDAEDRFLDALEGEAEPEAKRKIIGHVFVDIFDEE 314

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLKNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|212634312|ref|YP_002310837.1| GMP synthase [Shewanella piezotolerans WP3]
 gi|226739733|sp|B8CKS4|GUAA_SHEPW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|212555796|gb|ACJ28250.1| GMP synthase [Shewanella piezotolerans WP3]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  +    +++ +SGG DS  + + LH  + D+       + + VD+ L 
Sbjct: 212 SIIEDAVERLKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGDK------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E + V D       +    V  +N         A  E++  +I           
Sbjct: 266 RLN---EAQQVMDMFGDHFGLNIIHVDAENRFLDAMAGEADPESKRKIIGHVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 SKKCANAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|86145604|ref|ZP_01063934.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio sp. MED222]
 gi|85836575|gb|EAQ54701.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio sp. MED222]
          Length = 517

 Score = 44.1 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + +  H  + D      K + + VD+  L
Sbjct: 204 SIIEDAVARIKEQVGDDEVILGLSGGVDSSVVAMLAHRAIGD------KLTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +    +  +    V  ++         A  EA+  +I           
Sbjct: 258 RLN---EGEQVMEMFGDQFGLNIIKVDAEDRFLDALEGEAEPEAKRKIIGHVFVDIFDEE 314

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLKNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|299142692|ref|ZP_07035822.1| ExsB protein [Prevotella oris C735]
 gi|298575907|gb|EFI47783.1| ExsB protein [Prevotella oris C735]
          Length = 217

 Score = 44.1 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 39/188 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +I    IS D+        E+ +    C RL I H 
Sbjct: 8   VSGGMDSITLLY--------DKKDEIALG-ISFDYG-SNHNAKEIPFAEMHCRRLGIKHI 57

Query: 86  VVSWKNSKP--QTGLMAAAR---EARYA------------------LISEHAKTINATLI 122
            ++        ++ L+  A    E  YA                  +    A++ N   +
Sbjct: 58  TINLDFMHRYFKSSLLEGAEAIPEGHYADDNMKSTVVPFRNGIMLSIAIGIAESNNLKKV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + A+   D          R    K +  +    T +   N  +  P+    + DI     
Sbjct: 118 LIANHGGDHT---IYPDCRPEFIKAIDAAAYAGTFV---NTHVEAPYTNITKGDIARIGK 171

Query: 183 QRNISWCE 190
           +  + + E
Sbjct: 172 KLGLDYTE 179


>gi|261749175|ref|YP_003256860.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497267|gb|ACX83717.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 394

 Score = 44.1 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 30/131 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVR 71
               ++V +SGG DS    + L     +       ++    F+  +     +E + D   
Sbjct: 2   QKKRVVVGLSGGVDSSVAALLLKKQGYEVIGLFMHNWDDSVFNQCT----WKEDSID-AL 56

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAK 115
            V      L I   VV  K    ++                      RE ++ +  + + 
Sbjct: 57  LV---AKDLNIPFQVVEMKKEYEESIINYMFDGYRSGKTPNPDILCNREIKFNVFLKKSI 113

Query: 116 TINATLIMTAH 126
            + A  I T H
Sbjct: 114 DLGADFIATGH 124


>gi|288574621|ref|ZP_06392978.1| GMP synthase, large subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570362|gb|EFC91919.1| GMP synthase, large subunit [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 510

 Score = 44.1 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 23/192 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLRE 64
           +ES    +RS V    ++  +SGG DS      +   + DR         I VD   LR 
Sbjct: 201 VESSVASIRSKVGDDRVICGLSGGVDSSVAAALVSKAIGDR------LQCIFVDTGMLR- 253

Query: 65  TAKDEVRYVSD--VCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAK 115
               E   V +      L + H   S +      G+    R+ +           +E AK
Sbjct: 254 --DREAEEVLESYEAMDLNVVHVDASERFLTALEGVTDPERKRKIIGELFVRVFEAESAK 311

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  ++    + D +E+      +      +        +  D++L +  P     ++
Sbjct: 312 ISDAKWLLQGTLYPDVIES----GHQGKNAAVIKSHHNVGGLPEDMDLKVLEPLRDLFKD 367

Query: 176 DIRSFLLQRNIS 187
           ++R+     ++ 
Sbjct: 368 EVRAIGRILDVP 379


>gi|15610532|ref|NP_217913.1| GMP synthase [Mycobacterium tuberculosis H37Rv]
 gi|31794577|ref|NP_857070.1| GMP synthase [Mycobacterium bovis AF2122/97]
 gi|121639321|ref|YP_979545.1| GMP synthase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663260|ref|YP_001284783.1| GMP synthase [Mycobacterium tuberculosis H37Ra]
 gi|148824604|ref|YP_001289358.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis F11]
 gi|167968718|ref|ZP_02550995.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis H37Ra]
 gi|215405434|ref|ZP_03417615.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis 02_1987]
 gi|215413303|ref|ZP_03421988.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215428899|ref|ZP_03426818.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis T92]
 gi|215432363|ref|ZP_03430282.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis EAS054]
 gi|215447725|ref|ZP_03434477.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis T85]
 gi|218755175|ref|ZP_03533971.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis GM 1503]
 gi|219559470|ref|ZP_03538546.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis T17]
 gi|224991818|ref|YP_002646507.1| GMP synthase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800443|ref|YP_003033444.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 1435]
 gi|254552502|ref|ZP_05142949.1| GMP synthase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260188453|ref|ZP_05765927.1| GMP synthase [Mycobacterium tuberculosis CPHL_A]
 gi|260202526|ref|ZP_05770017.1| GMP synthase [Mycobacterium tuberculosis T46]
 gi|260206763|ref|ZP_05774254.1| GMP synthase [Mycobacterium tuberculosis K85]
 gi|289444947|ref|ZP_06434691.1| GMP synthase guaA [Mycobacterium tuberculosis T46]
 gi|289449094|ref|ZP_06438838.1| GMP synthase guaA [Mycobacterium tuberculosis CPHL_A]
 gi|289571633|ref|ZP_06451860.1| GMP synthase guaA [Mycobacterium tuberculosis T17]
 gi|289576129|ref|ZP_06456356.1| GMP synthase guaA [Mycobacterium tuberculosis K85]
 gi|289747224|ref|ZP_06506602.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289752114|ref|ZP_06511492.1| GMP synthase guaA [Mycobacterium tuberculosis T92]
 gi|289755526|ref|ZP_06514904.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis EAS054]
 gi|289759557|ref|ZP_06518935.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis T85]
 gi|289763579|ref|ZP_06522957.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis GM 1503]
 gi|294995830|ref|ZP_06801521.1| GMP synthase [Mycobacterium tuberculosis 210]
 gi|297636058|ref|ZP_06953838.1| GMP synthase [Mycobacterium tuberculosis KZN 4207]
 gi|297733058|ref|ZP_06962176.1| GMP synthase [Mycobacterium tuberculosis KZN R506]
 gi|298526879|ref|ZP_07014288.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306777737|ref|ZP_07416074.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu001]
 gi|306782464|ref|ZP_07420801.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu002]
 gi|306786284|ref|ZP_07424606.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu003]
 gi|306790654|ref|ZP_07428976.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu004]
 gi|306795181|ref|ZP_07433483.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu005]
 gi|306799372|ref|ZP_07437674.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu006]
 gi|306805219|ref|ZP_07441887.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu008]
 gi|306809404|ref|ZP_07446072.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu007]
 gi|306969510|ref|ZP_07482171.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu009]
 gi|306973855|ref|ZP_07486516.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu010]
 gi|307081567|ref|ZP_07490737.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu011]
 gi|307086176|ref|ZP_07495289.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu012]
 gi|313660389|ref|ZP_07817269.1| GMP synthase [Mycobacterium tuberculosis KZN V2475]
 gi|61225467|sp|P0A5A1|GUAA_MYCTU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|61225468|sp|P0A5A2|GUAA_MYCBO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739642|sp|A1KP87|GUAA_MYCBP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739644|sp|A5U871|GUAA_MYCTA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800106|sp|C1AHL0|GUAA_MYCBT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|1449391|emb|CAB01027.1| PROBABLE GMP SYNTHASE [GLUTAMINE-HYDROLYZING] GUAA (GLUTAMINE
           AMIDOTRANSFERASE) (GMP SYNTHETASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|31620174|emb|CAD95617.1| PROBABLE GMP SYNTHASE [GLUTAMINE-HYDROLYZING] GUAA (GLUTAMINE
           AMIDOTRANSFERASE) (GMP SYNTHETASE) [Mycobacterium bovis
           AF2122/97]
 gi|121494969|emb|CAL73455.1| Probable GMP synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148507412|gb|ABQ75221.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148723131|gb|ABR07756.1| GMP synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis F11]
 gi|224774933|dbj|BAH27739.1| GMP synthase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321946|gb|ACT26549.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 1435]
 gi|289417866|gb|EFD15106.1| GMP synthase guaA [Mycobacterium tuberculosis T46]
 gi|289422052|gb|EFD19253.1| GMP synthase guaA [Mycobacterium tuberculosis CPHL_A]
 gi|289540560|gb|EFD45138.1| GMP synthase guaA [Mycobacterium tuberculosis K85]
 gi|289545387|gb|EFD49035.1| GMP synthase guaA [Mycobacterium tuberculosis T17]
 gi|289687752|gb|EFD55240.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis 02_1987]
 gi|289692701|gb|EFD60130.1| GMP synthase guaA [Mycobacterium tuberculosis T92]
 gi|289696113|gb|EFD63542.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis EAS054]
 gi|289711085|gb|EFD75101.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis GM 1503]
 gi|289715121|gb|EFD79133.1| bifunctional GMP synthase/glutamine amidotransferase [Mycobacterium
           tuberculosis T85]
 gi|298496673|gb|EFI31967.1| gmp synthase [glutamine-hydrolyzing] guaA [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308213913|gb|EFO73312.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu001]
 gi|308324857|gb|EFP13708.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu002]
 gi|308329113|gb|EFP17964.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu003]
 gi|308332950|gb|EFP21801.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu004]
 gi|308336509|gb|EFP25360.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu005]
 gi|308340386|gb|EFP29237.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu006]
 gi|308344245|gb|EFP33096.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu007]
 gi|308348235|gb|EFP37086.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu008]
 gi|308352961|gb|EFP41812.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu009]
 gi|308356783|gb|EFP45634.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu010]
 gi|308360731|gb|EFP49582.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu011]
 gi|308364343|gb|EFP53194.1| GMP synthase guaA [Mycobacterium tuberculosis SUMu012]
 gi|326905240|gb|EGE52173.1| GMP synthase guaA [Mycobacterium tuberculosis W-148]
 gi|328460175|gb|AEB05598.1| GMP synthase guaA [Mycobacterium tuberculosis KZN 4207]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   + +V+
Sbjct: 219 VRTQIGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGERAQVQ 272

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTIN---A 119
              D  +        V             S P+       R+   A        ++   A
Sbjct: 273 --RDFVAATGANLVTVDAAETFLEALSGVSAPEGKRKIIGRQFIRAFEGAVRDVLDGKTA 330

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 331 EFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDLKFTLVEPLRLLFKDEVRA 385

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 386 VGRELGLP 393


>gi|311105115|ref|YP_003977968.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310759804|gb|ADP15253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Achromobacter xylosoxidans A8]
          Length = 372

 Score = 44.1 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 54/208 (25%), Gaps = 51/208 (24%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +       ++V +SGG DS      L     +     +K               D+  Y 
Sbjct: 3   QKSTKKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNW----------EDDDDSEYC 52

Query: 74  ---------SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYA 108
                    + V   + +    V++                 A R          E ++ 
Sbjct: 53  STRQDLLDAASVADLVGVEFEFVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFK 112

Query: 109 LISEHAKTINATLIMTAHTF----------DDQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
              +HA  + A  I T H              Q +   +++     ++   L  +    L
Sbjct: 113 AFLDHAMALGAEHIATGHYARVREVPAVGGGTQFQ--LLKALDASKDQSYFLHRLNQAQL 170

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNI 186
                    P     + ++R    +  +
Sbjct: 171 SRTMF----PLGEIHKTEVRRIAHEIGL 194


>gi|323341681|ref|ZP_08081914.1| thiamine biosynthesis protein ThiI [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464106|gb|EFY09299.1| thiamine biosynthesis protein ThiI [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 409

 Score = 44.1 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 57/191 (29%), Gaps = 44/191 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVSDVC 77
             ++V +SGG DS      +           ++  AI          T+ +  + V D+ 
Sbjct: 188 GKVMVMLSGGIDSPVAAYLMMK-------RGVRIEAIHFA---SPPYTSDEAQKKVMDLA 237

Query: 78  SRL-----RIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTA 125
            +L      I  +VV + + +       P++  +   R     +    A   N   I   
Sbjct: 238 QQLTNYQDHIRINVVPFTDVQLEIYKKVPESYAITMMRRFMLRIAERLAFRRNCLAIANG 297

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL--- 182
                  E++         +           I     L I RP +   + +I        
Sbjct: 298 -------ESL--------GQVASQTLHSMKEITNIGTLPILRPLITYDKVEIIDLARKID 342

Query: 183 --QRNISWCED 191
             + +I   ED
Sbjct: 343 TYETSILPFED 353


>gi|306817970|ref|ZP_07451707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35239]
 gi|304649238|gb|EFM46526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35239]
          Length = 394

 Score = 44.1 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 53/204 (25%), Gaps = 54/204 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK------------ 67
             +++ +SGG DS      L     D     +K           E +             
Sbjct: 3   KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKL----------EESDCDGEDNPTAQAL 52

Query: 68  DEVRYVSDVCSRLRIAHS-------VVSWKNSKPQTGLMAAA------------REARYA 108
            + R V+     L I          V  ++       + A A            R  ++ 
Sbjct: 53  ADARKVAAY---LGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFG 109

Query: 109 LISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
            + E A       + T H        D       R +R  + +      +       L  
Sbjct: 110 YVVERALREGFDYVATGHYACLDHIGDG-----FRLRRGASLEKDQSYVLAGARAEMLAH 164

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            I   F    + + R+   +R + 
Sbjct: 165 AIFPLFDVRDKAETRAEAQRRGLP 188


>gi|119713382|gb|ABL97445.1| GMP synthetase [uncultured marine bacterium EB80_69G07]
          Length = 520

 Score = 44.1 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 71/185 (38%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           V++LV    ++ A+SGG DS  +   L+  +        K   I V+   LR+   +E++
Sbjct: 216 VQNLVGKNKVICALSGGVDSSVVAQLLNKAIGK------KLFCIFVNTGLLRKN--EEIQ 267

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARY-------ALISEHAKTINATLIM 123
            V     +L+I    V+ +N    +   ++   + R         +   +AK I     +
Sbjct: 268 VVKTFKKKLKINLIYVNAENEFLRKLNNVSDPEKKRKIIGNLFIKIFERYAKRIKNVKFL 327

Query: 124 TAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
              T   D +E+   +S        +        +   + L +  P     ++++R   L
Sbjct: 328 AQGTLYPDLIES---KSVTGSQTSKIKSHHNVGGLPKKMKLKLVEPLKFLFKDEVRKLGL 384

Query: 183 QRNIS 187
           +  +S
Sbjct: 385 ELKLS 389


>gi|73670403|ref|YP_306418.1| hypothetical protein Mbar_A2943 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397565|gb|AAZ71838.1| phosphoadenosine phosphosulfate reductase [Methanosarcina barkeri
           str. Fusaro]
          Length = 796

 Score = 44.1 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 8/83 (9%)

Query: 4   SPIESVRFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + I ++R  + R       + V+ SGG DS+ +L    S L  R     +  A  ++  +
Sbjct: 372 NAINTIRGIISRKEHKNLPVYVSFSGGKDSLVVLDLARSSLKQR-----ELKAFFLNTGI 426

Query: 63  RETAKDEVRYVSDVCSRLRIAHS 85
                + V +V + C    I   
Sbjct: 427 --EFPETVEFVRNFCREREIPLV 447


>gi|315636553|ref|ZP_07891789.1| transcription regulator ExsB [Arcobacter butzleri JV22]
 gi|315479202|gb|EFU69899.1| transcription regulator ExsB [Arcobacter butzleri JV22]
          Length = 228

 Score = 44.1 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 59/191 (30%), Gaps = 47/191 (24%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL----- 80
           +SGG DS      L S ++ +     +  A+  ++  R     E++   D+C+ L     
Sbjct: 13  LSGGMDST-----LSSYIAKKD--GFEIIAVHFNYGQRTQ-NRELKAFKDICNELDIKSK 64

Query: 81  ---RIAHSVVSWKNS-------KPQTGLMAAA-------REARYALI-SEHAKTINATLI 122
               I        N+        P +GL A         R   +  I +  A+   AT +
Sbjct: 65  YEIDIPFFTQIGANALTDMSIDVPTSGLEAGVPITYVPFRNGIFLAITAAIAEKEGATAM 124

Query: 123 MTAHTFD------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                 +      D  E      ++           +      D  + I  P +   +  
Sbjct: 125 YIGVVQEDSSGYPDCTEEFIQDMKK----------AINQGTKEDTKIEIITPLVHLSKAQ 174

Query: 177 IRSFLLQRNIS 187
           I    ++ N+ 
Sbjct: 175 IVQEAIKLNVP 185


>gi|262306107|gb|ACY45646.1| gln amidotransferase [Scolopendra polymorpha]
          Length = 197

 Score = 44.1 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  V    +L+ VSGG DS      L   L +      +  A+ +D+   R+    E  
Sbjct: 37  IRDTVGTHKVLMLVSGGVDSTVCAALLRKALPEE-----QVIAVHIDNGFMRKN---ESL 88

Query: 72  YVSDVCSRLRIAHSVVSW 89
            V    +++ +   VV+ 
Sbjct: 89  QVEQSLNKIGLKLKVVNV 106


>gi|237784943|ref|YP_002905648.1| GMP synthase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757855|gb|ACR17105.1| GMP synthase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 524

 Score = 44.1 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 70/197 (35%), Gaps = 29/197 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E VR   + +      +  +SGG DS     A+ + L  R+ G  + + + VDH  LR+
Sbjct: 210 VEQVR---QQVGPEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRK 260

Query: 65  TAKDEVR--YVSDVCSRL-RIAHS---------VVSWKNSKPQTGLMAAAREARYAL--I 110
             +++V   +V+   + L  +  +         V   +  +   G        R     +
Sbjct: 261 GEREQVENDFVASTGANLVTVDETDAFLSALKGVTDPEKKRKAIGNEFIRSFERAVAGVL 320

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           S+  +      ++    + D +E+             +        +  D+   +  P  
Sbjct: 321 SDAPEGARVDFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFTLVEPLR 375

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 376 LLFKDEVRAVGRELGLP 392


>gi|170767217|ref|ZP_02901670.1| GMP synthase (glutamine-hydrolyzing) [Escherichia albertii TW07627]
 gi|170123551|gb|EDS92482.1| GMP synthase (glutamine-hydrolyzing) [Escherichia albertii TW07627]
          Length = 525

 Score = 44.1 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLR-----IAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D    R       +            +    A      R        E
Sbjct: 266 RLN---EAEQVMDMFGDRFGLNIIHVPAEDRFLSALAGEHDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKVEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|227824492|ref|ZP_03989324.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904991|gb|EEH90909.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 250

 Score = 44.1 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 23/162 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---KDEVRYVS 74
               + +A SGG DS  L+ A                A ++D     +A   + E+    
Sbjct: 12  AHPRVAIAFSGGVDSTYLVTAAAQYAQ-------SVHAYTID-----SAFVPRFELEGAK 59

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA------AAREARYALISEHAKTINATLIMTAHTF 128
            +  ++ I H+++     + +T +          ++A ++ I + AK     L++     
Sbjct: 60  ALTKKIGITHTLLPIDVLQNETVVQNPKDRCYFCKKAVFSTIWKAAKKDGYNLLLDGTNA 119

Query: 129 DDQLETV--YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            D                   + L G+  +++ + +  +  P
Sbjct: 120 SDDASDRPGMKALAELDVLSPLRLCGLTKSLIRERSRALGLP 161


>gi|288802312|ref|ZP_06407752.1| ExsB protein [Prevotella melaninogenica D18]
 gi|288335279|gb|EFC73714.1| ExsB protein [Prevotella melaninogenica D18]
          Length = 218

 Score = 44.1 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 39/186 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL      ++          AIS D+  +     E+ Y    C +L I H 
Sbjct: 8   VSGGLDSITLLYDKAETIAL---------AISFDYG-QNHGAKELPYAQYHCEKLGIPHI 57

Query: 86  VV--SWKNSKPQTGLMAAAR---EARY------------------ALISEHAKTINATLI 122
            +  S+ +   ++ L+  A    E  Y                  A+ +  A++     +
Sbjct: 58  TIPLSFMHQYFKSSLLDGADAIPEGHYEEENMKSTVVPFRNGIMLAIATGIAESHELKRV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             A+   D          R      M  +    T +    + +  P+    + +I +   
Sbjct: 118 YIANHGGDHT---IYPDCRPEFIHAMNGATEAGTFVK---VRVEAPYTEITKAEIVARGA 171

Query: 183 QRNISW 188
              I +
Sbjct: 172 ALGIDY 177


>gi|302346706|ref|YP_003815004.1| protein ExsB [Prevotella melaninogenica ATCC 25845]
 gi|302150631|gb|ADK96892.1| protein ExsB [Prevotella melaninogenica ATCC 25845]
          Length = 218

 Score = 44.1 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 39/186 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL      ++          AIS D+  +     E+ Y    C +L I H 
Sbjct: 8   VSGGLDSITLLYDKAETIAL---------AISFDYG-QNHGAKELPYAQYHCEKLGIPHI 57

Query: 86  VV--SWKNSKPQTGLMAAAR---EARY------------------ALISEHAKTINATLI 122
            +  S+ +   ++ L+  A    E  Y                  A+ +  A++     +
Sbjct: 58  TIPLSFMHQYFKSSLLDGADAIPEGHYEEENMKSTVVPFRNGIMLAIATGIAESHELKRV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             A+   D          R      M  +    T +    + +  P+    + +I +   
Sbjct: 118 YIANHGGDHT---IYPDCRPEFIHAMNGATEAGTFVK---VRVEAPYTEITKAEIVARGA 171

Query: 183 QRNISW 188
              I +
Sbjct: 172 ALGIDY 177


>gi|52548840|gb|AAU82689.1| argininosuccinate synthase [uncultured archaeon GZfos19A5]
          Length = 388

 Score = 44.1 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 57/191 (29%), Gaps = 56/191 (29%)

Query: 20  AHILVAVSGGSD-SMG--LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV------ 70
             +++A SGG D S+   LL           +G  +  A++V+    E    E       
Sbjct: 2   KKVVLAYSGGLDTSVCIPLL--------KEHYGYDEVIAVTVNVGQPEEDIKEAKERGAK 53

Query: 71  ------------RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                        +V D      I   + +  N +      A AR      + E A+   
Sbjct: 54  LSNSYREIDAKDEFVRDY-----IFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREEK 108

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRRE 175
           A     AH                    G G   +  D +    +L +  P   L   RE
Sbjct: 109 AD--AVAH-----------------GCTGKGNDQLRFDAVFRTTDLDVVAPMRELSLTRE 149

Query: 176 DIRSFLLQRNI 186
           + R +  +  I
Sbjct: 150 EERKYAAEHGI 160


>gi|261210909|ref|ZP_05925199.1| queuosine Biosynthesis QueC ATPase [Vibrio sp. RC341]
 gi|260839884|gb|EEX66484.1| queuosine Biosynthesis QueC ATPase [Vibrio sp. RC341]
          Length = 231

 Score = 44.1 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|83647621|ref|YP_436056.1| GMP synthase [Hahella chejuensis KCTC 2396]
 gi|123531578|sp|Q2SCJ3|GUAA_HAHCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83635664|gb|ABC31631.1| GMP synthase, PP-ATPase domain/subunit [Hahella chejuensis KCTC
           2396]
          Length = 526

 Score = 44.1 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 65/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           VR+ V    +L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 222 VRNQVGQDKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRLHEG-DQV 274

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINAT 120
           +         + I     + ++            E +  +I         +E AK  +  
Sbjct: 275 MDM---FAKNMGIKVVRANAQDQFLSKLAGENDPERKRKIIGHTFIEVFDAEAAKIKDVK 331

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+    + +      +        +  D+ + +  P     ++++R  
Sbjct: 332 WLAQGTIYPDVIES---AAAKTGKAHVIKSHHNVGGLPEDMEMQLVEPLRELFKDEVRKI 388

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 389 GLELGLPY 396


>gi|78223495|ref|YP_385242.1| GMP synthase [Geobacter metallireducens GS-15]
 gi|91206808|sp|Q39TA7|GUAA_GEOMG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78194750|gb|ABB32517.1| GMP synthase (glutamine-hydrolyzing) [Geobacter metallireducens
           GS-15]
          Length = 520

 Score = 44.1 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 62/188 (32%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +++ +SGG DS      +H  + D      + + + VD+  LR +  D+V 
Sbjct: 216 IRAQVGNDRVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRLSEGDQVM 269

Query: 72  YVSDVCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHAKTI-----NAT 120
             +     L +   V+                     R+    L  +  +       +A 
Sbjct: 270 --ATFAENLGVK--VIRVDAEDRFLTALAGESDPEKKRKIIGKLFVDIFEEESNKITDAR 325

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +   + L +  P     ++++R+ 
Sbjct: 326 WLAQGTIYPDVIES---AGAKTGKAHNIKSHHNVGGLPDYMKLKLLEPLRELFKDEVRAI 382

Query: 181 LLQRNISW 188
             +  +  
Sbjct: 383 GEELGLPH 390


>gi|330895673|gb|EGH27965.1| ExsB family protein [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 201

 Score = 44.1 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 13/80 (16%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS+         ++      I   AI++++  +  AK E+     +C RL I H 
Sbjct: 7   LSGGMDSLS--------IAWWKRPDI---AITLNYG-QLAAKAEIAASRAICQRLEIPHH 54

Query: 86  VVSWKNSKPQTGLMAAAREA 105
           V+        +G   A R+A
Sbjct: 55  VLEIDCRHLGSG-DMAGRQA 73


>gi|320100766|ref|YP_004176358.1| GMP synthase [Desulfurococcus mucosus DSM 2162]
 gi|319753118|gb|ADV64876.1| GMP synthase (glutamine-hydrolyzing) [Desulfurococcus mucosus DSM
           2162]
          Length = 523

 Score = 44.1 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 20/167 (11%)

Query: 31  DSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLRIAHSVV-- 87
           DS        + L  R     K   + VDH L RE  ++ V  VS +  +L +   VV  
Sbjct: 238 DSTV------TALIGRKVFGEKLIPVFVDHGLLREGERESV--VSSL-EKLGLNPLVVDA 288

Query: 88  --SWKNSKPQTGLMAAAREAR----YALISEHAKTINATLIMTAHTFDDQLETVYMRSQR 141
              + +           R         + +E  +   A   +   T+ D +E+  +R   
Sbjct: 289 GERFISRLEGVVDCEERRRVIGEEFAKIFAEIVEKEGARYFLQGTTYPDIIESGGIRGAA 348

Query: 142 DYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
              +    + G+ +   +   + +  P     ++++R      N+ W
Sbjct: 349 SVIKSHHNVGGLPE--WFRDRVKVLEPIRYLYKDEVREIARLLNVPW 393


>gi|229523532|ref|ZP_04412937.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae bv. albensis
          VL426]
 gi|229337113|gb|EEO02130.1| queuosine Biosynthesis QueC ATPase [Vibrio cholerae bv. albensis
          VL426]
          Length = 231

 Score = 44.1 bits (103), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|323701739|ref|ZP_08113410.1| exsB protein [Desulfotomaculum nigrificans DSM 574]
 gi|323533275|gb|EGB23143.1| exsB protein [Desulfotomaculum nigrificans DSM 574]
          Length = 228

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 26 VSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
          +SGG DS + L   L     +         A++ ++  R +A  E++  + + +   + H
Sbjct: 7  LSGGLDSAVCLAYGLTETKVEL--------ALTFNYGQR-SATREIQAAAALANYYGVKH 57

Query: 85 SVVS 88
           V+ 
Sbjct: 58 RVID 61


>gi|186477293|ref|YP_001858763.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phymatum STM815]
 gi|205811492|sp|B2JGI9|MNMA_BURP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|184193752|gb|ACC71717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia phymatum STM815]
          Length = 384

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 49/206 (23%), Gaps = 58/206 (28%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---S 74
               ++V +SGG DS      L     D     +K               D+  Y     
Sbjct: 2   SKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 75  DV------CSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
           D          + I    V++                 A R          E ++    +
Sbjct: 52  DWIDVVSVADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
           HA ++ A  I T H              R     G            D + ++ R     
Sbjct: 112 HAMSLGAETIATGHYA------------RVREIDGRFELLKARDHTKDQSYFLHRLNQAQ 159

Query: 168 ------PFLRCRREDIRSFLLQRNIS 187
                 P     +  +R    Q  + 
Sbjct: 160 LSKTLFPLGDIPKTKVREIAEQIGLP 185


>gi|116754005|ref|YP_843123.1| PP-loop domain-containing protein [Methanosaeta thermophila PT]
 gi|116665456|gb|ABK14483.1| PP-loop domain protein [Methanosaeta thermophila PT]
          Length = 282

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 82/258 (31%), Gaps = 53/258 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +      + +   +LV+ SGG DS  L      VL D +       A+ +D      +
Sbjct: 6   EKLDLLREIIAFKESMLVSFSGGVDSSLLAAISRDVLGDGA------VAVILD------S 53

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHAKT 116
               + E+ + + V   L I   V      + ++ +  +             ++ + A +
Sbjct: 54  PLMPRRELEHATSVAQLLGIRCIVAVHDVFELESVIENSPERCYHCKKSSAGILKKLANS 113

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR--CRR 174
           +  + +       D  E                       I       I  PF+     +
Sbjct: 114 LGISCVADGVNTTD-YEDF------------------RPGIRASDEEGICHPFVDAGISK 154

Query: 175 EDIRSFLLQRNISWCEDPSNTDDRFERVRV----R---RFVRDIDLHALYLKMKKFQDLR 227
            DIR       + +   PS+        R+    R   + ++ ++L    LK      +R
Sbjct: 155 SDIREIARSIGLDFWNRPSSACLA---SRIPYGVRITPQLLKRVELAEDALKAIGLSQIR 211

Query: 228 VKVNNAVAMLIPKYLTVH 245
           V+ +  +A +  +   + 
Sbjct: 212 VRAHGDLARIEVQQSEIQ 229


>gi|326390968|ref|ZP_08212518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993010|gb|EGD51452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 376

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 64/245 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L             F  I V   + +   +E   V  
Sbjct: 13  MKKNNRVVVGMSGGVDSSVSAYLLKEQG---------FDVIGVTMQIWQDKDEEAVRVEG 63

Query: 74  -----------SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARY 107
                        V +++ I + V+++K+   +                    A  +  Y
Sbjct: 64  GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNK--Y 121

Query: 108 ALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMG-LSGMCDTILY 159
               E  K    I+A  + T H      D++     ++   D ++     L  +  T L 
Sbjct: 122 IKFEELLKRAWMIDAYYVATGHYAIKEYDEERRRYLLKKSVDTSKDQTYVLYNLTQTQLE 181

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPSNTDDRFERVRVRRFV 208
                I  P  + +++++R       +            +  D  N   +F R   +  +
Sbjct: 182 ----HILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTD--NDYGKFIRENAKEEI 235

Query: 209 RDIDL 213
           +  + 
Sbjct: 236 KPGEF 240


>gi|322807474|emb|CBZ05048.1| valyl-tRNA synthetase [Clostridium botulinum H04402 065]
          Length = 881

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 19/134 (14%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDI-- 177
            +   H  DD L+ + MR++R      + L G    +I  ++ +          +++I  
Sbjct: 53  KLHLGHALDDTLQDILMRTKRMQGYSTLWLPGQDHASIATEVKVENELLKEGIVKKEIGR 112

Query: 178 RSFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            +FL +    W   D       + R ++R  ++ +   +L    ++F  +  +++ AV  
Sbjct: 113 EAFLEK---VWEWTDE------Y-RNKIRNQIKKLGC-SLDFTRERFT-MDEQLDKAVKH 160

Query: 237 LIPKYLTVHMRSII 250
               ++ ++   +I
Sbjct: 161 F---FVKLYNEGLI 171


>gi|282859363|ref|ZP_06268471.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella bivia JCVIHMP010]
 gi|282587848|gb|EFB93045.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Prevotella bivia JCVIHMP010]
          Length = 514

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    ++  +    +++ +SGG DS      L+  +          + I VDH  L
Sbjct: 198 SFVESTVDDLKKQLGNDRVILGLSGGVDSSVCATLLNKAIGK------NLTCIFVDHGML 251

Query: 63  RET 65
           R+ 
Sbjct: 252 RKN 254


>gi|302874094|ref|YP_003842727.1| exsB protein [Clostridium cellulovorans 743B]
 gi|307689650|ref|ZP_07632096.1| exsB protein [Clostridium cellulovorans 743B]
 gi|302576951|gb|ADL50963.1| exsB protein [Clostridium cellulovorans 743B]
          Length = 222

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          + S +    ILV +SGG DS   L  A+ +             AI  ++  R     E++
Sbjct: 1  MSSSLKEQDILVVLSGGQDSTTCLFWAIKNFR--------NVKAIGFNYGQRHE--LELQ 50

Query: 72 YVSDVCSRLRIAHSVVS 88
              +C    +++ V+ 
Sbjct: 51 CARKICEENNVSYEVLD 67


>gi|226950593|ref|YP_002805684.1| valine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
 gi|226841749|gb|ACO84415.1| valine--tRNA ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 881

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 19/134 (14%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDI-- 177
            +   H  DD L+ + MR++R      + L G    +I  ++ +          +++I  
Sbjct: 53  KLHLGHALDDTLQDILMRTKRMQGYSTLWLPGQDHASIATEVKVENELLKEGIVKKEIGR 112

Query: 178 RSFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            +FL +    W   D       + R ++R  ++ +   +L    ++F  +  +++ AV  
Sbjct: 113 EAFLEK---VWEWTDE------Y-RNKIRNQIKKLGC-SLDFTRERFT-MDEQLDKAVKH 160

Query: 237 LIPKYLTVHMRSII 250
               ++ ++   +I
Sbjct: 161 F---FVKLYNEGLI 171


>gi|213648807|ref|ZP_03378860.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 451

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 138 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 191

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 192 RLN---EAEQVMDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 248

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 249 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 305

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 306 FKDEVRKIGLELGLPY 321


>gi|196019212|ref|XP_002118942.1| hypothetical protein TRIADDRAFT_9863 [Trichoplax adhaerens]
 gi|190577616|gb|EDV18572.1| hypothetical protein TRIADDRAFT_9863 [Trichoplax adhaerens]
          Length = 136

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 34/131 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS----------AISVDHCLRETAKDEVR 71
           ++VA+SGG DS  +   LH    +     ++            A          A  ++ 
Sbjct: 1   VVVAMSGGVDSSTVAAMLHEQNYEVIGITLQLYDAGEMAAKKGACC--------AGQDIY 52

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAK 115
                  ++ I H V+++++   +  +   A                 + ++  + + AK
Sbjct: 53  DAKVAADKIGIPHYVLNYESLFSKKVIEDFAESYIKGETPIPCVKCNQKVKFEDLYKTAK 112

Query: 116 TINATLIMTAH 126
            + A  + T H
Sbjct: 113 NLGAKALATGH 123


>gi|170755423|ref|YP_001782798.1| valyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
 gi|169120635|gb|ACA44471.1| valyl-tRNA synthetase [Clostridium botulinum B1 str. Okra]
          Length = 881

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 19/134 (14%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDI-- 177
            +   H  DD L+ + MR++R      + L G    +I  ++ +          +++I  
Sbjct: 53  KLHLGHALDDTLQDILMRTKRMQGYSTLWLPGQDHASIATEVKVENELLKEGIVKKEIGR 112

Query: 178 RSFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            +FL +    W   D       + R ++R  ++ +   +L    ++F  +  +++ AV  
Sbjct: 113 EAFLEK---VWEWTDE------Y-RNKIRNQIKKLGC-SLDFTRERFT-MDEQLDKAVKH 160

Query: 237 LIPKYLTVHMRSII 250
               ++ ++   +I
Sbjct: 161 F---FVKLYNEGLI 171


>gi|168183482|ref|ZP_02618146.1| valine--tRNA ligase [Clostridium botulinum Bf]
 gi|237796619|ref|YP_002864171.1| valyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657]
 gi|182673388|gb|EDT85349.1| valine--tRNA ligase [Clostridium botulinum Bf]
 gi|229262502|gb|ACQ53535.1| valine--tRNA ligase [Clostridium botulinum Ba4 str. 657]
          Length = 881

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 19/134 (14%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDI-- 177
            +   H  DD L+ + MR++R      + L G    +I  ++ +          +++I  
Sbjct: 53  KLHLGHALDDTLQDILMRTKRMQGYSTLWLPGQDHASIATEVKVENELLKEGIVKKEIGR 112

Query: 178 RSFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            +FL +    W   D       + R ++R  ++ +   +L    ++F  +  +++ AV  
Sbjct: 113 EAFLEK---VWEWTDE------Y-RNKIRNQIKKLGC-SLDFTRERFT-MDEQLDKAVKH 160

Query: 237 LIPKYLTVHMRSII 250
               ++ ++   +I
Sbjct: 161 F---FVKLYNEGLI 171


>gi|168179187|ref|ZP_02613851.1| valyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
 gi|182670164|gb|EDT82140.1| valyl-tRNA synthetase [Clostridium botulinum NCTC 2916]
          Length = 881

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 19/134 (14%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDI-- 177
            +   H  DD L+ + MR++R      + L G    +I  ++ +          +++I  
Sbjct: 53  KLHLGHALDDTLQDILMRTKRMQGYSTLWLPGQDHASIATEVKVENELLKEGIVKKEIGR 112

Query: 178 RSFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            +FL +    W   D       + R ++R  ++ +   +L    ++F  +  +++ AV  
Sbjct: 113 EAFLEK---VWEWTDE------Y-RNKIRNQIKKLGC-SLDFTRERFT-MDEQLDKAVKH 160

Query: 237 LIPKYLTVHMRSII 250
               ++ ++   +I
Sbjct: 161 F---FVKLYNEGLI 171


>gi|153940722|ref|YP_001392440.1| valyl-tRNA synthetase [Clostridium botulinum F str. Langeland]
 gi|152936618|gb|ABS42116.1| valine--tRNA ligase [Clostridium botulinum F str. Langeland]
 gi|295320426|gb|ADG00804.1| valine--tRNA ligase [Clostridium botulinum F str. 230613]
          Length = 881

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 19/134 (14%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDI-- 177
            +   H  DD L+ + MR++R      + L G    +I  ++ +          +++I  
Sbjct: 53  KLHLGHALDDTLQDILMRTKRMQGYSTLWLPGQDHASIATEVKVENELLKEGIVKKEIGR 112

Query: 178 RSFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            +FL +    W   D       + R ++R  ++ +   +L    ++F  +  +++ AV  
Sbjct: 113 EAFLEK---VWEWTDE------Y-RNKIRNQIKKLGC-SLDFTRERFT-MDEQLDKAVKH 160

Query: 237 LIPKYLTVHMRSII 250
               ++ ++   +I
Sbjct: 161 F---FVKLYNEGLI 171


>gi|148381112|ref|YP_001255653.1| valyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|153934142|ref|YP_001385486.1| valyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|153935830|ref|YP_001388892.1| valyl-tRNA synthetase [Clostridium botulinum A str. Hall]
 gi|148290596|emb|CAL84725.1| valyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502]
 gi|152930186|gb|ABS35686.1| valyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397]
 gi|152931744|gb|ABS37243.1| valine--tRNA ligase [Clostridium botulinum A str. Hall]
          Length = 881

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 19/134 (14%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDI-- 177
            +   H  DD L+ + MR++R      + L G    +I  ++ +          +++I  
Sbjct: 53  KLHLGHALDDTLQDILMRTKRMQGYSTLWLPGQDHASIATEVKVENELLKEGIVKKEIGR 112

Query: 178 RSFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            +FL +    W   D       + R ++R  ++ +   +L    ++F  +  +++ AV  
Sbjct: 113 EAFLEK---VWEWTDE------Y-RNKIRNQIKKLGC-SLDFTRERFT-MDEQLDKAVKH 160

Query: 237 LIPKYLTVHMRSII 250
               ++ ++   +I
Sbjct: 161 F---FVKLYNEGLI 171


>gi|56963894|ref|YP_175625.1| aluminum resistance protein [Bacillus clausii KSM-K16]
 gi|81366060|sp|Q5WG41|QUEC_BACSK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|56910137|dbj|BAD64664.1| aluminum resistance protein [Bacillus clausii KSM-K16]
          Length = 221

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 31/131 (23%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           ++    ++V  SGG DS   L                  A+  D+  R   K+E++   D
Sbjct: 1   MLEDKAVVV-FSGGQDSTTCLFWAKERYR-------SLHAVIFDYGQRH--KEEIQCAVD 50

Query: 76  VCSRLRIAHSV------------------VSWKNSKPQTGLMA--AAREARY-ALISEHA 114
           + +   + + V                  +S +  +         A R   + +  + +A
Sbjct: 51  IANEQGVPYKVFDMGLLNQLTANALTRENISVQAGEAGESPSTFVAGRNHLFLSFAAVYA 110

Query: 115 KTINATLIMTA 125
           + + A  I+T 
Sbjct: 111 REMGAKHIITG 121


>gi|93005976|ref|YP_580413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter cryohalolentis K5]
 gi|122415456|sp|Q1QBM4|MNMA_PSYCK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|92393654|gb|ABE74929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter cryohalolentis K5]
          Length = 408

 Score = 44.1 bits (103), Expect = 0.047,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 31/130 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
            H++V +SGG DS    + L           +K           E        A D++  
Sbjct: 33  KHVIVGMSGGVDSSVSAVLLQQAGFMVEGLFMK--------NWEEDDGTEYCTAMDDLAD 84

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKT 116
              VC ++ I     ++                 A R          E ++    ++A T
Sbjct: 85  AQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLDYALT 144

Query: 117 INATLIMTAH 126
           + A  I T H
Sbjct: 145 LGADYIATGH 154


>gi|319789152|ref|YP_004150785.1| GMP synthase, large subunit [Thermovibrio ammonificans HB-1]
 gi|317113654|gb|ADU96144.1| GMP synthase, large subunit [Thermovibrio ammonificans HB-1]
          Length = 518

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 68/186 (36%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V   +++ A+SGG DS  +   LH  + D+ +         VD   LR+  ++ V 
Sbjct: 214 IRETVGDKNVICALSGGVDSSVVAALLHRAIGDQLYPIF------VDTGLLRKGERESVE 267

Query: 72  YVSDVCSRLR------IAHSVVSWKNSKPQTGLMAAAREARYAL---ISEHAKTI-NATL 121
                  +        I  S +  +  K  T      +   +       + AK I NA  
Sbjct: 268 --RTFKEKFHMKNFKVIDASDLFLERLKGVTDPEQKRKIIGHTFIEVFEKAAKEIPNAEF 325

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V ++      +    + G+ + +    N  +  P     ++++R   
Sbjct: 326 LAQGTLYPDVIESVSVKGPSATIKSHHNVGGLPERL----NFKLIEPLRELFKDEVRELG 381

Query: 182 LQRNIS 187
            +  + 
Sbjct: 382 KELGLP 387


>gi|228470778|ref|ZP_04055626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas uenonis 60-3]
 gi|228307451|gb|EEK16456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas uenonis 60-3]
          Length = 376

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 55/197 (27%), Gaps = 34/197 (17%)

Query: 15  SLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------- 65
           +L   + I L+A SGG DS   +  L           I+         +++         
Sbjct: 8   ALPRDSRIALLA-SGGVDSSVAMHLLVEAGFRPDLYYIRI-------GMQDEDGSFLDCP 59

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISE 112
           A++++  V+ +  R  +   +V          +       R  L                
Sbjct: 60  AEEDIELVTLLARRYDLHLEIVDLHQVYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFGA 119

Query: 113 HAKTINA--TLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             +   A    I T H     Q E                   +   I +     +  P 
Sbjct: 120 FEERCGASYDYIATGHYATIRQTEDGLTFLGTSPDPVKDQTDFLAQ-IGFRQMERLLFPI 178

Query: 170 LRCRREDIRSFLLQRNI 186
               +E++R   L+ ++
Sbjct: 179 GHLPKEEVRRIALEAHL 195


>gi|294340452|emb|CAZ88833.1| GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase)
           (GMP synthetase) (GMPS) [Thiomonas sp. 3As]
          Length = 532

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E+V+  +R+ V    +++ +SGG DS      +H  + D        + + VDH L
Sbjct: 211 EAVQS-IRAQVGDEEVILGLSGGVDSSVAAALIHRAIGDH------LTCVFVDHGL 259


>gi|262306011|gb|ACY45598.1| gln amidotransferase [Argulus sp. Arg2]
          Length = 196

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R +V    ++V +SGG DS      LH  LS       +  AI +D+   R+    E 
Sbjct: 36  YIRDIVKNNKVMVLLSGGVDSSVCAALLHKALS-----PEQVIAIHIDNGFMRKN---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V +  S L I   V++
Sbjct: 88  QQVFNSLSNLGINVHVIN 105


>gi|261329284|emb|CBH12265.1| GMP synthase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 658

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 7   ESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           +++R           +L +A SGG DS    + L   L     G  +   I +DH   R 
Sbjct: 210 KALRLIRERTTQGQKVLCLA-SGGVDSTVCAVLLLKAL-----GPERVVCIHIDHGFMRL 263

Query: 65  TAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108
               EV  V+ +  + + +     + + S+  T   A   +  Y 
Sbjct: 264 NESQEV--VAALRAAGVNVTLIDATKQFSEATTEFPAKRGKGAYQ 306


>gi|197285404|ref|YP_002151276.1| GMP synthase [Proteus mirabilis HI4320]
 gi|226739664|sp|B4EY59|GUAA_PROMH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|194682891|emb|CAR43237.1| GMP synthase [glutamine-hydrolyzing] [Proteus mirabilis HI4320]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 23/194 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     ++  +   H+++A+SGG DS    + L+  +  R       + + VD+  LR 
Sbjct: 214 IEDTVARLKQQIGDDHVILALSGGVDSSVTALLLNRAIGKR------LTCVFVDNGLLRL 267

Query: 65  TAKDEVRYVSDVCS---RLRIAH---SVVSWKNSKPQTGLMAAAREARYALI----SEHA 114
               E   V  +      L I H           K +       +   +  I     E  
Sbjct: 268 N---EAEQVMAMFKGKFDLNIIHVEAEDRFLTALKGENDPEKKRKIIGHTFIEIFDEEAV 324

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K      +     + D +E+    + + +  K          +  D+ L +  P     +
Sbjct: 325 KLPQVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPEDMKLGLVEPLKELFK 381

Query: 175 EDIRSFLLQRNISW 188
           +++R   L+  + +
Sbjct: 382 DEVRKIGLELGLPY 395


>gi|158521761|ref|YP_001529631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfococcus oleovorans Hxd3]
 gi|205816872|sp|A9A0S9|MNMA_DESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|158510587|gb|ABW67554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfococcus oleovorans Hxd3]
          Length = 358

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 42/204 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I V VSGG DS+     L    +D        +AI           D    +  + +++ 
Sbjct: 19  IAVLVSGGIDSLVAAHLLKQSGAD-------VTAIHFLTGYEPE--DRAGRLEKLFTQMD 69

Query: 82  IAHSVVSWKNSKPQTGLMA-AAREAR---------------YALISEHAKTINATLIMTA 125
           I   +   +       +    A   R               +    ++A+++ A  + T 
Sbjct: 70  IPVFIFDCRTVFQSNVVDYFTAAYLRGETPNPCMVCNSRIKFGACMDYARSLGADAVATG 129

Query: 126 H----TFD-DQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           H    T D D +     R  +       +   L+ +    L         P  R  ++ +
Sbjct: 130 HYCRTTKDPDGV-----RLWKGADPAKEQSYFLAFLSQDQLGRARF----PLERMTKDQV 180

Query: 178 RSFLLQRNISWCEDPSNTDDRFER 201
           R+   +  +   E   + D  F R
Sbjct: 181 RAHAARHGLVPIESKESQDVCFIR 204


>gi|146312639|ref|YP_001177713.1| GMP synthase [Enterobacter sp. 638]
 gi|226738453|sp|A4WD82|GUAA_ENT38 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145319515|gb|ABP61662.1| GMP synthase (glutamine-hydrolyzing) [Enterobacter sp. 638]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 64/189 (33%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E  
Sbjct: 221 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAE 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALI-----SEHAKTINA 119
            V D       +  ++V  +  +             A R+    +       +  +  + 
Sbjct: 272 QVMDMFGDHFGL--NIVHVEGEERFLTALAGENDPEAKRKIIGRVFVEVFDEQALRLEDV 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + + +  K          +  ++ + +  P     ++++R 
Sbjct: 330 KWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRK 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 IGLELGLPY 395


>gi|228957712|ref|ZP_04119456.1| hypothetical protein bthur0005_12280 [Bacillus thuringiensis
          serovar pakistani str. T13001]
 gi|228801955|gb|EEM48828.1| hypothetical protein bthur0005_12280 [Bacillus thuringiensis
          serovar pakistani str. T13001]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +++   L I H+V+ 
Sbjct: 50 CAAEIAKELGIKHTVLD 66


>gi|229029111|ref|ZP_04185209.1| hypothetical protein bcere0028_12130 [Bacillus cereus AH1271]
 gi|228732209|gb|EEL83093.1| hypothetical protein bcere0028_12130 [Bacillus cereus AH1271]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +++   L I H+V+ 
Sbjct: 50 CAAEIAKELGIKHTVLD 66


>gi|229149641|ref|ZP_04277872.1| hypothetical protein bcere0011_12000 [Bacillus cereus m1550]
 gi|228633851|gb|EEK90449.1| hypothetical protein bcere0011_12000 [Bacillus cereus m1550]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +++   L I H+V+ 
Sbjct: 50 CAAEIAKELGIKHTVLD 66


>gi|228920152|ref|ZP_04083501.1| hypothetical protein bthur0011_11690 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228938555|ref|ZP_04101163.1| hypothetical protein bthur0008_12200 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228951821|ref|ZP_04113919.1| hypothetical protein bthur0006_12350 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228971434|ref|ZP_04132060.1| hypothetical protein bthur0003_12140 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228978047|ref|ZP_04138426.1| hypothetical protein bthur0002_12510 [Bacillus thuringiensis
          Bt407]
 gi|229016689|ref|ZP_04173622.1| hypothetical protein bcere0030_12600 [Bacillus cereus AH1273]
 gi|229022901|ref|ZP_04179421.1| hypothetical protein bcere0029_12470 [Bacillus cereus AH1272]
 gi|229043182|ref|ZP_04190905.1| hypothetical protein bcere0027_12360 [Bacillus cereus AH676]
 gi|229068991|ref|ZP_04202284.1| hypothetical protein bcere0025_11990 [Bacillus cereus F65185]
 gi|229078625|ref|ZP_04211182.1| hypothetical protein bcere0023_12900 [Bacillus cereus Rock4-2]
 gi|229108896|ref|ZP_04238500.1| hypothetical protein bcere0018_11720 [Bacillus cereus Rock1-15]
 gi|229126757|ref|ZP_04255769.1| hypothetical protein bcere0015_12140 [Bacillus cereus BDRD-Cer4]
 gi|229144044|ref|ZP_04272460.1| hypothetical protein bcere0012_12070 [Bacillus cereus BDRD-ST24]
 gi|229177847|ref|ZP_04305220.1| hypothetical protein bcere0005_12110 [Bacillus cereus 172560W]
 gi|228605638|gb|EEK63086.1| hypothetical protein bcere0005_12110 [Bacillus cereus 172560W]
 gi|228639441|gb|EEK95855.1| hypothetical protein bcere0012_12070 [Bacillus cereus BDRD-ST24]
 gi|228656697|gb|EEL12523.1| hypothetical protein bcere0015_12140 [Bacillus cereus BDRD-Cer4]
 gi|228674552|gb|EEL29792.1| hypothetical protein bcere0018_11720 [Bacillus cereus Rock1-15]
 gi|228704695|gb|EEL57124.1| hypothetical protein bcere0023_12900 [Bacillus cereus Rock4-2]
 gi|228714103|gb|EEL65985.1| hypothetical protein bcere0025_11990 [Bacillus cereus F65185]
 gi|228726144|gb|EEL77378.1| hypothetical protein bcere0027_12360 [Bacillus cereus AH676]
 gi|228738436|gb|EEL88912.1| hypothetical protein bcere0029_12470 [Bacillus cereus AH1272]
 gi|228744597|gb|EEL94666.1| hypothetical protein bcere0030_12600 [Bacillus cereus AH1273]
 gi|228781708|gb|EEM29907.1| hypothetical protein bthur0002_12510 [Bacillus thuringiensis
          Bt407]
 gi|228788301|gb|EEM36254.1| hypothetical protein bthur0003_12140 [Bacillus thuringiensis
          serovar thuringiensis str. T01001]
 gi|228807744|gb|EEM54265.1| hypothetical protein bthur0006_12350 [Bacillus thuringiensis
          serovar kurstaki str. T03a001]
 gi|228821153|gb|EEM67170.1| hypothetical protein bthur0008_12200 [Bacillus thuringiensis
          serovar berliner ATCC 10792]
 gi|228839608|gb|EEM84900.1| hypothetical protein bthur0011_11690 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +++   L I H+V+ 
Sbjct: 50 CAAEIAKELGIKHTVLD 66


>gi|193075070|gb|ACF08537.1| GuaA [Pseudomonas aeruginosa]
          Length = 281

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V  + +L+ +SGG DS  +   LH  + D      + + + VD+  LR    D+V 
Sbjct: 73  VRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEGDQVM 126

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINAT 120
             +     + +   V+         G +A             R        E  K  +  
Sbjct: 127 --AMFAENMGVK--VIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATKLQDVK 182

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +  D+   +  P     ++++R  
Sbjct: 183 FLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKDEVRKI 239

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 240 GLELGVPY 247


>gi|229543595|ref|ZP_04432655.1| exsB protein [Bacillus coagulans 36D1]
 gi|229328015|gb|EEN93690.1| exsB protein [Bacillus coagulans 36D1]
          Length = 221

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS   L       + + F +++  A++ D+  R   + E+    ++   L 
Sbjct: 7  VVV-FSGGQDSTTCLF-----WAKKKFQEVE--AVTFDYGQRH--RLEIECAKNIAEELG 56

Query: 82 IAHSVVSWK 90
          +   ++  +
Sbjct: 57 VKQHILDMQ 65


>gi|118476910|ref|YP_894061.1| aluminum resistance protein [Bacillus thuringiensis str. Al
          Hakam]
 gi|229090393|ref|ZP_04221636.1| hypothetical protein bcere0021_12220 [Bacillus cereus Rock3-42]
 gi|118416135|gb|ABK84554.1| preQ(0) biosynthesis protein QueC [Bacillus thuringiensis str. Al
          Hakam]
 gi|228692976|gb|EEL46694.1| hypothetical protein bcere0021_12220 [Bacillus cereus Rock3-42]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +++   L I H+V+ 
Sbjct: 50 CAAEIAKELGIKHTVLD 66


>gi|84489963|ref|YP_448195.1| ATPase [Methanosphaera stadtmanae DSM 3091]
 gi|110816234|sp|Q2NF51|QUEC_METST RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|84373282|gb|ABC57552.1| predicted ATPase [Methanosphaera stadtmanae DSM 3091]
          Length = 226

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           P  I V +SGG DS           +         +AI+ ++  +++ K E+++   +C
Sbjct: 2  KPKAITV-LSGGLDSTV--------ATSIYANDYDITAITFNYG-QQSIKQELKHAKMIC 51

Query: 78 SRLRIAHSVVSWKNSKPQTG 97
           +L + H V+     K  + 
Sbjct: 52 EKLDMKHIVIDLPWLKEISN 71


>gi|34541004|ref|NP_905483.1| exsB protein [Porphyromonas gingivalis W83]
 gi|81417265|sp|Q7MV08|QUEC_PORGI RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|34397319|gb|AAQ66382.1| exsB protein [Porphyromonas gingivalis W83]
          Length = 220

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 39/188 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ L+         R+   +   A+S D+   +    E+ +      RL + H 
Sbjct: 11  VSGGMDSVTLMY------EKRASIAL---ALSFDYG-SKHNARELSFARLHAERLGVEHL 60

Query: 86  VVSWK--NSKPQTGLMAAAR---EARY------------------ALISEHAKTINATLI 122
           ++         Q+ L+ +     E RY                  A+ +  A++     I
Sbjct: 61  IIPLDFIGQYFQSDLLLSGGDIPEGRYDEENMKSTVVPFRNGIMLAVAAGLAESRGLRRI 120

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             A+ F D          R    + M  +  C T      + I  P+    + DI     
Sbjct: 121 YIANHFGDHA---IYPDCRASFIRPMTEAVRCGTT---NGVLIEAPYTDITKTDIARIGA 174

Query: 183 QRNISWCE 190
              I + E
Sbjct: 175 SLGIDYAE 182


>gi|88802260|ref|ZP_01117787.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Polaribacter irgensii 23-P]
 gi|88781118|gb|EAR12296.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Polaribacter irgensii 23-P]
          Length = 511

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +ES    ++  V    +++ +SGG DS    + LH  +            I V++ L
Sbjct: 199 SFVESTVAAIQKQVGSDKVVLGLSGGVDSTVAAVLLHKAIGK------NLYCIFVNNGL 251


>gi|330506961|ref|YP_004383389.1| hypothetical protein MCON_0768 [Methanosaeta concilii GP-6]
 gi|328927769|gb|AEB67571.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 264

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 17/193 (8%)

Query: 8   SVRFFVRS---LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-HCLR 63
            VR  +R      +   + +A+ GG  S  +   +  + + R    I  + + +D H   
Sbjct: 26  KVRETIRQTGLFAHGLRLALAMDGGKGSAVMANIIKELFARRR--DIDLALLILDDHG-- 81

Query: 64  ETAK-DEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTIN 118
             AK   +     +  R+ I    VS       S P    ++ A++ R  +++  A+ + 
Sbjct: 82  PGAKSAWIAS-QQLGLRVSIKALPVSLLNERVASDPAPDPISFAQKMR--MMTGLAREMG 138

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN-LWISRPFLRCRREDI 177
           A  I T H  DD    V++                     Y+   +   +P  R   +++
Sbjct: 139 ANAIATGHDLDDMATEVFISYLEGNICGLQYGRQETRQEGYEQGMIPTIQPLRRIPGKEV 198

Query: 178 RSFLLQRNISWCE 190
           R + LQ  + + E
Sbjct: 199 RLYALQHGLCFAE 211


>gi|322368466|ref|ZP_08043035.1| GMP synthase subunit B [Haladaptatus paucihalophilus DX253]
 gi|320552482|gb|EFW94127.1| GMP synthase subunit B [Haladaptatus paucihalophilus DX253]
          Length = 305

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 20/187 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE     +R  V  +H ++A+SGG DS       +  + D      + + + VD  L 
Sbjct: 6   KFIEKAVAEIREAVGDSHAIIALSGGVDSSVAAGLAYKAIGD------QLTPVYVDTGLM 59

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTIN 118
           R+   +++R      S L +  +   + ++          R+             A+  +
Sbjct: 60  RKGETNQIRKTFSYMSSLEVVEAEDRFFDALSGVTDPEEKRKVIGEQFIREFEREARVTD 119

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           A  ++    + D++E           +    + G+ D + +D    I  P     ++++R
Sbjct: 120 ADYLVQGTIYPDRIE------SEGGIKSHHNVGGLPDVVDFDG---IVEPVRDLYKDEVR 170

Query: 179 SFLLQRN 185
                  
Sbjct: 171 EVARALG 177


>gi|289523946|ref|ZP_06440800.1| PP-loop family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289502602|gb|EFD23766.1| PP-loop family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 267

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 48/186 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSD 75
            +IL+ +SGG DS  L      V       +    A++       ++     DEV     
Sbjct: 15  DNILILLSGGLDSSFLAYTCSKV-------EGNVLAVTF------SSPLIPDDEVEEAKK 61

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           V     + H V+   +           R           +             D    T+
Sbjct: 62  VAETFGLEHHVIYSDDLSVSEIRQNHPRRC------YFCRK----------NRD----TL 101

Query: 136 YMRSQRDYAEKGMGLS---GMCDTILYDLNLW------ISRPF--LRCRREDIRSFLLQR 184
            M+    +A KG  +       DT+ Y   L       +  P      R+EDIR    + 
Sbjct: 102 VMKWLEKFALKGYVVMDGVTESDTMEYRPGLEAAKEDGVHHPLKEAGLRKEDIRKLAREF 161

Query: 185 NISWCE 190
           ++ + +
Sbjct: 162 DLKFWD 167


>gi|283832117|ref|ZP_06351858.1| GMP synthase [Citrobacter youngae ATCC 29220]
 gi|291071745|gb|EFE09854.1| GMP synthase [Citrobacter youngae ATCC 29220]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 221 IREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 271

Query: 72  YVSD-VCSRLRIAHSVVS-----WKNSKPQTGLMAAA----REARYALISEHAKTINATL 121
            V D       +    V       +  K +    A      R        E  K  +   
Sbjct: 272 QVMDMFGDHFGLNIVHVEGESRFLEALKGENDPEAKRKIIGRVFVEVFDEEALKLEDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|254173857|ref|ZP_04880528.1| iron-sulfur protein [Thermococcus sp. AM4]
 gi|214032106|gb|EEB72937.1| iron-sulfur protein [Thermococcus sp. AM4]
          Length = 377

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 36/187 (19%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS-FGKIKFSAISVDHCLRETAKDE 69
           +F+R     A I V+ SGG DS+  L     V   R+ F                 +   
Sbjct: 16  YFLRQFPKSA-IAVSFSGGKDSLVALHLASRVGIRRAVFSDTTI-----------ESSKT 63

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL---------ISEHAKTINAT 120
           + Y+ +V + L +   +V  + S  +   M      R+           +SE+AK  +  
Sbjct: 64  IEYIKEVETILGVKIDIVRPQKSFWELLPMLGPPSTRHRWCCPTIKYPQLSEYAKKHHIK 123

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
             +T    ++      +R +     K +G + M   ++         P +     ++  +
Sbjct: 124 YYITGLRRNES----LIRME----YKKIGKNPMIPYVIQ------VNPIIDWTENEVWEY 169

Query: 181 LLQRNIS 187
           + + N+ 
Sbjct: 170 IKKYNLP 176


>gi|126175185|ref|YP_001051334.1| GMP synthase [Shewanella baltica OS155]
 gi|153001511|ref|YP_001367192.1| GMP synthase [Shewanella baltica OS185]
 gi|160876247|ref|YP_001555563.1| GMP synthase [Shewanella baltica OS195]
 gi|304410028|ref|ZP_07391647.1| GMP synthase, large subunit [Shewanella baltica OS183]
 gi|307302259|ref|ZP_07582017.1| GMP synthase, large subunit [Shewanella baltica BA175]
 gi|226739726|sp|A3D6V2|GUAA_SHEB5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739727|sp|A6WQP0|GUAA_SHEB8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739728|sp|A9KWW6|GUAA_SHEB9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|125998390|gb|ABN62465.1| GMP synthase (glutamine-hydrolyzing) [Shewanella baltica OS155]
 gi|151366129|gb|ABS09129.1| GMP synthase, large subunit [Shewanella baltica OS185]
 gi|160861769|gb|ABX50303.1| GMP synthase, large subunit [Shewanella baltica OS195]
 gi|304351437|gb|EFM15836.1| GMP synthase, large subunit [Shewanella baltica OS183]
 gi|306914297|gb|EFN44718.1| GMP synthase, large subunit [Shewanella baltica BA175]
 gi|315268436|gb|ADT95289.1| GMP synthase, large subunit [Shewanella baltica OS678]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  +    +++ +SGG DS  + + LH  +        K + + VD+  L
Sbjct: 212 SIIEDAIERLKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGK------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +       +    V  +N         A  EA+  +I           
Sbjct: 266 RLN---EAEQVMEMFGDHFGLNIIHVDAENRFLDAMKGEADPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 SKKCANAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|328950099|ref|YP_004367434.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450423|gb|AEB11324.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis
           DSM 14884]
          Length = 374

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 55/205 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIK----FSAISVDHCLRETAK 67
               +L A+SGG DS      L     +      R +   K    F+           A 
Sbjct: 5   RKGRVLAAMSGGVDSSVTAALLKEQGYEVIGAMMRFWPDNKPEDCFNTCC-----SPDAA 59

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKP----QTGLMAAAR------------EARYALIS 111
            E R V+D   ++ I   ++ ++        Q  L    R              ++  + 
Sbjct: 60  YEARRVAD---QIGIPFYLLDYREVFEVEIIQPFLEGYRRGETPIPCVWCNTRVKFDALL 116

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI----------LYDL 161
           + A+ +    + T H             +R    +G+      D              + 
Sbjct: 117 KKARMLGCDYVATGH-----------YVRRVEGPQGIEFHRGGDPRKDQTYFLWGTPREA 165

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI 186
              I  P    ++ ++R    +  +
Sbjct: 166 MPHILFPVGHMQKPEVRRLAERFGL 190


>gi|291562415|emb|CBL41231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [butyrate-producing bacterium SS3/4]
          Length = 358

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 42/139 (30%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------- 65
              ++V +SGG DS      L     D     ++          +E              
Sbjct: 2   KKKVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQI--------WQEEDSCTVEENGGCCG 53

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARY 107
             A ++ R V+     L I + V++++    +                    A  R  ++
Sbjct: 54  LSAVEDARRVAWT---LGIPYYVMNFRKEFQKNVIDYFVAEYLHGRTPNPCIACNRYVKW 110

Query: 108 ALISEHAKTINATLIMTAH 126
             + E +  I A  I T H
Sbjct: 111 EALLERSLEIGADYIATGH 129


>gi|262066104|ref|ZP_06025716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium periodonticum ATCC 33693]
 gi|291380199|gb|EFE87717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium periodonticum ATCC 33693]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25 KVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81 RIAHSVVSWKNSKPQT 96
           I H V+  ++   + 
Sbjct: 73 GIEHYVLDVRDEFKEK 88


>gi|288942408|ref|YP_003444648.1| GMP synthase large subunit [Allochromatium vinosum DSM 180]
 gi|288897780|gb|ADC63616.1| GMP synthase, large subunit [Allochromatium vinosum DSM 180]
          Length = 524

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 25/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     +R+ V    +L+ +SGG DS  +   LH  + D      + + + VD+  L
Sbjct: 211 NIIEDSLARIRAQVGTDKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLL 264

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALI-----S 111
           R    D+V   S     + +   V+     +               R+            
Sbjct: 265 RLGEGDQVM--STFARHMGV--RVIRVDAEERFLGRLKGVSDPEQKRKIIGNTFIEVFDD 320

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E +K  +   +     + D +E+      +    K +        +  ++NL +  P   
Sbjct: 321 EASKLQDVKWLAQGTIYPDVIES---AGSKTGKAKVIKSHHNVGGLPEEMNLKLVEPLRE 377

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R   ++  + +
Sbjct: 378 LFKDEVRKIGVELGLPY 394


>gi|237739900|ref|ZP_04570381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium sp. 2_1_31]
 gi|229423508|gb|EEO38555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium sp. 2_1_31]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25 KVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81 RIAHSVVSWKNSKPQT 96
           I H V+  ++   + 
Sbjct: 73 GIEHYVLDVRDEFKEK 88


>gi|120603213|ref|YP_967613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris DP4]
 gi|205816916|sp|A1VFH0|MNMA_DESVV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120563442|gb|ABM29186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris DP4]
          Length = 346

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 36/189 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG+DS+  L+ L            +F        +  T  D V  +  +C RL 
Sbjct: 3   IAVAMSGGTDSLFALVLLKEQGQQVCGLHARF--------IPPTGHDPVPDIRAMCDRLG 54

Query: 82  IAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHAKTINATLIMTA 125
           +   VV    +  +                   A      ++ L+++ A  + A  + T 
Sbjct: 55  VDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAVHLATG 114

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR------PFLRCRREDIRS 179
           H          +R  R       G+    D   +   +  +R      P    R+E +R 
Sbjct: 115 HYAR------LLRHPRWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAVRG 168

Query: 180 FLLQRNISW 188
            L +R+I  
Sbjct: 169 ELARRSIVP 177


>gi|145224833|ref|YP_001135511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium gilvum PYR-GCK]
 gi|315445164|ref|YP_004078043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. Spyr1]
 gi|189040505|sp|A4TDZ4|MNMA_MYCGI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145217319|gb|ABP46723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium gilvum PYR-GCK]
 gi|315263467|gb|ADU00209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. Spyr1]
          Length = 357

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 58/198 (29%), Gaps = 42/198 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------AKD 68
            +LVA+SGG DS      + +   D          + V   L               +K+
Sbjct: 2   RVLVAMSGGVDSSVAAARMVAAGHD---------VVGVHLALSSAPGTLRTGSRGCCSKE 52

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAR------------EARYALISE 112
           +      V   L I   V  + +   +  +     + AR              +++ ++ 
Sbjct: 53  DAGDARRVADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALAS 112

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  +    + T H      +    R+     ++   L+ +    L         P    
Sbjct: 113 RALALGFDALATGHYAR-LADGRLRRAVDHDKDQSYVLAVLTAEQLRHA----VFPIGDT 167

Query: 173 RREDIRSFLLQRNISWCE 190
            +  IR    +  ++  +
Sbjct: 168 PKAQIREEAARLGLAVAD 185


>gi|222875175|gb|EEF12306.1| predicted protein [Populus trichocarpa]
          Length = 53

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 84  HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           +SVV     + +T         R A++ + A  +  T +   H  DD ++T+
Sbjct: 3   YSVVKRVVPEGKT-TCGLCSRLRRAILYKVADELGCTKVALGHHRDDIVQTL 53


>gi|302036775|ref|YP_003797097.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Nitrospira
           defluvii]
 gi|190343190|gb|ACE75578.1| GMP synthetase [Candidatus Nitrospira defluvii]
 gi|300604839|emb|CBK41171.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Nitrospira
           defluvii]
          Length = 518

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 22/196 (11%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             S +E+    +R  V    ++ A+SGG DS       H  + D      + + + VD+ 
Sbjct: 204 MRSYVETAVEQIRQQVGTERVICALSGGVDSSVAAALTHRAVGD------QLTCVFVDNG 257

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSW---------KNSKPQTGLMAAAREARYALIS 111
            LR   +D+V       S++ +   ++             + P+       R        
Sbjct: 258 VLRTGERDQVE--KTFASQMHLNMRILDRTSQFLTGLKNVTDPERKRKIIGRLFIKNFEV 315

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  K      ++    + D +E+V  +      +    + G+       + L +  P   
Sbjct: 316 ESKKLKGIKYLVQGTLYPDVIESVSFKGPSATIKTHHNVGGL----PTRMKLKLVEPLRE 371

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R    +  + 
Sbjct: 372 LFKDEVRVLGQELGLP 387


>gi|164663255|ref|XP_001732749.1| hypothetical protein MGL_0524 [Malassezia globosa CBS 7966]
 gi|159106652|gb|EDP45535.1| hypothetical protein MGL_0524 [Malassezia globosa CBS 7966]
          Length = 545

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 47/218 (21%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I+     +R +V P + ++ A+SGG DS      +H  + DR      F AI VD+  
Sbjct: 210 TFIDKEIARIREMVGPTSRVIGAISGGVDSSVAAKIMHEAIGDR------FHAIMVDNGV 263

Query: 62  LRETAKDEVRYV-SDVCSRLRIAHSVVSW---------KNSKPQ--------TGLMAAAR 103
           LR     E + V   +   L +  +VV               P+        T +    R
Sbjct: 264 LRMN---EAKQVYEMLSEHLGVQLTVVDASDLFLGRLQDVEDPERKRKIIGNTFIEVFER 320

Query: 104 EARY-----ALISEHAKTIN---------ATLIMTAHTFDDQLETVYMRSQRDYAEKGMG 149
           EA             A +              ++    + D +E++  +      +    
Sbjct: 321 EAERLEKDAEAQEAQALSHGGAPGKIAGKYEFLLQGTLYPDVIESISFKGPSATIKTHHN 380

Query: 150 LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + G+ +    D+ L +  P     ++++R       I 
Sbjct: 381 VGGLLE----DMKLKLIEPLRELFKDEVRELGKLMGIP 414


>gi|20091715|ref|NP_617790.1| hypothetical protein MA2894 [Methanosarcina acetivorans C2A]
 gi|19916892|gb|AAM06270.1| phosphoadenosine phosphosulfate reductase [Methanosarcina
           acetivorans C2A]
          Length = 767

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 4   SPIESVRFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + I ++R  V R+      + V+ SGG DS+ +L    + L  R F     +       +
Sbjct: 337 NAINTIRGIVSRNEYRELPVYVSFSGGKDSLVVLDLTRAALKQREFKAFFLNT-----GI 391

Query: 63  RETAKDEVRYVSDVCSRLRIAHS 85
                + V++  D+C  +++   
Sbjct: 392 --EFPETVKFARDLCREMKVPLE 412


>gi|33593833|ref|NP_881477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella pertussis Tohama I]
 gi|33600935|ref|NP_888495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella bronchiseptica RB50]
 gi|81423057|sp|Q7U359|MNMA_BORPE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81423064|sp|Q7U387|MNMA_BORBR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33563906|emb|CAE43165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella pertussis Tohama I]
 gi|33568535|emb|CAE32447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella bronchiseptica RB50]
 gi|332383252|gb|AEE68099.1| tRNA-specific 2-thiouridylase MnmA [Bordetella pertussis CS]
          Length = 371

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 50/203 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     +     +K               D+  Y     
Sbjct: 7   RKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNW----------EDDDDSEYCSTRQ 56

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISE 112
                + V   + +    V++             R                E ++    +
Sbjct: 57  DLLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 116

Query: 113 HAKTINATLIMTAHTFDDQLETV---------YMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           HA  + A  I T H    ++ TV          +++  D  ++   L  +    L     
Sbjct: 117 HAMALGAEHIATGHYA--RVRTVETPAGPRHQLLKALDDTKDQSYFLHRLNQVQLART-- 172

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
               P    R+ ++R    +  +
Sbjct: 173 --LFPLGELRKTEVRRIAHEIGL 193


>gi|46202015|ref|ZP_00208351.1| COG0367: Asparagine synthase (glutamine-hydrolyzing)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 587

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R L+    + V +SGG DS  ++  +      R                 E A DE  Y 
Sbjct: 214 RRLISDVPLGVFLSGGVDSSLVVAMMARFREGRDIHAFSI-------GFHEKAFDESGYA 266

Query: 74  SDVCSRLRIAHSVVSWKNSK 93
             V     + H V  + +++
Sbjct: 267 ESVARAWGVDHHVTRFSDAE 286


>gi|325294272|ref|YP_004280786.1| GMP synthase (glutamine-hydrolyzing) [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064720|gb|ADY72727.1| GMP synthase (glutamine-hydrolyzing) [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 517

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 70/186 (37%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R +V   +++ A+SGG DS  +   LH  + D+ +         VD   LR+  ++ V 
Sbjct: 213 IREIVGDKNVICALSGGVDSSVVAALLHKAIGDQLYPIF------VDTGLLRKGERESVE 266

Query: 72  YVSDVCSRLR------IAHSVVSWKNSKPQTGLMAAAREARYAL---ISEHAKTI-NATL 121
                  + +      +  S +  +  K  T      +   +       + AK I NA  
Sbjct: 267 --KTFREKFQMKNFRTVDASSLFLERLKGVTDPEKKRKIIGHTFIEVFEKAAKEIPNAHF 324

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+V ++      +    + G+ + +    N  +  P     ++++R   
Sbjct: 325 LAQGTLYPDVIESVSVKGPSATIKSHHNVGGLPERL----NFKLIEPLRELFKDEVRELG 380

Query: 182 LQRNIS 187
            +  + 
Sbjct: 381 KELGLP 386


>gi|315167557|gb|EFU11574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX1341]
          Length = 351

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 28/144 (19%)

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YAL 109
           A ++ + V+ V  ++ I +  V+++             E R                +  
Sbjct: 29  ATEDYKDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKA 88

Query: 110 ISEHAKTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             ++A  + A  + T H    Q+ET        +R   +  ++   LS +    L     
Sbjct: 89  FLDYAMQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF 146

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
               P     + ++R+   +  ++
Sbjct: 147 ----PLGGMEKSEVRAIAERAGLA 166


>gi|307265334|ref|ZP_07546891.1| ExsB family protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919618|gb|EFN49835.1| ExsB family protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 83

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          L+A SGG DS  L    + VL +R       S +         +  E++   ++  ++ +
Sbjct: 12 LIAFSGGVDSTFLAKVSYDVLGNRVLAVTATSPMH------PKS--ELKEAVELAKKIGL 63

Query: 83 AHSVVSWKN 91
           H VV + +
Sbjct: 64 PHLVVEFND 72


>gi|254514300|ref|ZP_05126361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR5-3]
 gi|219676543|gb|EED32908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium NOR5-3]
          Length = 368

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 31/134 (23%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKD 68
           +  P  ++V +SGG DS    + L           +K           E        AK 
Sbjct: 1   MAAPQKVIVGMSGGVDSSVAALMLLEQGYHVEGLFMK--------NWDEDDGTEYCTAKA 52

Query: 69  EVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISE 112
           +      V  +L+I     +     W N          +           RE ++    +
Sbjct: 53  DFADAQAVADKLQITLHSANFAAEYWDNVFEHFLAEYQSGRTPNPDILCNREIKFRAFLD 112

Query: 113 HAKTINATLIMTAH 126
           +A  + A  I T H
Sbjct: 113 YALELGADSIATGH 126


>gi|319950723|ref|ZP_08024619.1| GMP synthase [Dietzia cinnamea P4]
 gi|319435601|gb|EFV90825.1| GMP synthase [Dietzia cinnamea P4]
          Length = 519

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 29/198 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           + +   VR  +     +  +SGG DS     A+ + L  R+ G  + + + VDH  LR  
Sbjct: 202 DQLVEAVREQIGDGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAG 255

Query: 66  AKDEVR--YVSDVCSRLRIAHS-----------VVSWKNSKPQTGLMAAAREARY--ALI 110
            +++V   +V+   +RL I              V   +  +   G        R     +
Sbjct: 256 EREQVENDFVAATGARL-ITLDESDVFLGHLDGVTDPEAKRKIIGREFIRSFERAVTQAL 314

Query: 111 SEHAKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               +       ++    + D +E+             +        +  D+   +  P 
Sbjct: 315 ELQGEDGGSVDFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFTLVEPL 369

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R+      + 
Sbjct: 370 RLLFKDEVRAVGRALGLP 387


>gi|288559694|ref|YP_003423180.1| queuosine biosynthesis protein QueC [Methanobrevibacter
          ruminantium M1]
 gi|288542404|gb|ADC46288.1| queuosine biosynthesis protein QueC [Methanobrevibacter
          ruminantium M1]
          Length = 211

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 10/70 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +L+ +SGG DS  LL  L +  +         +A+S ++   + A  E+   S++C    
Sbjct: 6  VLI-LSGGLDSTTLLYKLLNEGN-------NVTALSFNYG--QKAAIEIERASEICKMND 55

Query: 82 IAHSVVSWKN 91
          + H V   +N
Sbjct: 56 VNHFVFDIRN 65


>gi|256845062|ref|ZP_05550520.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
 gi|256718621|gb|EEU32176.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25 KVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81 RIAHSVVSWKNSKPQT 96
           I H V+  +N   + 
Sbjct: 73 GIEHYVLDVRNEFKEK 88


>gi|237741734|ref|ZP_04572215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium sp. 4_1_13]
 gi|294785652|ref|ZP_06750940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium sp. 3_1_27]
 gi|229429382|gb|EEO39594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium sp. 4_1_13]
 gi|294487366|gb|EFG34728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium sp. 3_1_27]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25 KVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81 RIAHSVVSWKNSKPQT 96
           I H V+  +N   + 
Sbjct: 73 GIEHYVLDVRNEFKEK 88


>gi|239626056|ref|ZP_04669087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239520286|gb|EEQ60152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 358

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 48/201 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------- 72
             ++V +SGG DS      L     D     ++          ++   D           
Sbjct: 3   KKVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQI--------WQDEDTDVQEAEGGCCGL 54

Query: 73  -----VSDVCSRLRIAHSVVSWKNSKPQT------GLMAAARE-------ARYALISEHA 114
                   V   L I + V+++K            G   A R         RY       
Sbjct: 55  SAVDDARRVAMDLGIPYYVMNFKEEFRTNVMDYFVGEYVAGRTPNPCIACNRYVKWESLL 114

Query: 115 KT---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW---ISR- 167
           +    I A  I T H           +           ++   D      NL    ++R 
Sbjct: 115 RRSMAIGADYIATGHYAQ------ICQLPSGRYALKTSVTAQKDQTYALYNLTQEQLART 168

Query: 168 --PFLRCRREDIRSFLLQRNI 186
             P     +++IR       +
Sbjct: 169 LMPVGSYHKDEIRRMAEDIGL 189


>gi|123966991|ref|YP_001012072.1| PP family ATPase [Prochlorococcus marinus str. MIT 9515]
 gi|123201357|gb|ABM72965.1| ATP-utilizing enzymes of the PP-loop superfamily [Prochlorococcus
           marinus str. MIT 9515]
          Length = 252

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 49/181 (27%), Gaps = 43/181 (23%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK----DEVRYVSDVC 77
           + VA SGG DS  +       L  ++       A++    +         DE        
Sbjct: 7   VCVAYSGGVDSTLVASLAFEQLGSKAI------AVT---GVSPALAKTLLDEA---KSQA 54

Query: 78  SRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             + I H  +          SK       A ++  +   +  +K +N  ++      DD 
Sbjct: 55  KWIGINHLEIETSELDQSSYSKNPKNRCFACKKELHKHTTYLSKKLNYKIVCDGVNLDD- 113

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWC 189
                             L      I    +  +  P       ++DIR         W 
Sbjct: 114 ------------------LGDYRPGIKAAKDAGVVSPLAKFNFTKKDIRDISRALGFPWW 155

Query: 190 E 190
           +
Sbjct: 156 D 156


>gi|71065801|ref|YP_264528.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter arcticus 273-4]
 gi|123648512|sp|Q4FSB4|MNMA_PSYA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|71038786|gb|AAZ19094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Psychrobacter arcticus 273-4]
          Length = 408

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 31/130 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
            H++V +SGG DS    + L           +K           E        A D++  
Sbjct: 33  KHVIVGMSGGVDSSVSAVLLQQAGFVVEGLFMK--------NWEEDDGTEYCTAMDDLAD 84

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEHAKT 116
              VC ++ I     ++                 A R          E ++    ++A T
Sbjct: 85  AQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLDYALT 144

Query: 117 INATLIMTAH 126
           + A  I T H
Sbjct: 145 LGADYIATGH 154


>gi|34763143|ref|ZP_00144111.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
          [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887172|gb|EAA24275.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
          [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25 KVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81 RIAHSVVSWKNSKPQT 96
           I H V+  +N   + 
Sbjct: 73 GIEHYVLDVRNEFKEK 88


>gi|296328692|ref|ZP_06871209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154291|gb|EFG95092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           I VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25 RIGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81 RIAHSVVSWKNSKPQT 96
           I H ++  ++   + 
Sbjct: 73 GIEHYILDVRDEFKEK 88


>gi|261252910|ref|ZP_05945483.1| queuosine Biosynthesis QueC ATPase [Vibrio orientalis CIP 102891]
 gi|260936301|gb|EEX92290.1| queuosine Biosynthesis QueC ATPase [Vibrio orientalis CIP 102891]
          Length = 232

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQSLAKEL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 GVAAHKV 60


>gi|229160392|ref|ZP_04288390.1| hypothetical protein bcere0009_11860 [Bacillus cereus R309803]
 gi|228623116|gb|EEK79944.1| hypothetical protein bcere0009_11860 [Bacillus cereus R309803]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +D+   L I H+V+ 
Sbjct: 50 CAADIAKELGIKHTVLD 66


>gi|254431220|ref|ZP_05044923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanobium sp. PCC 7001]
 gi|197625673|gb|EDY38232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Cyanobium sp. PCC 7001]
          Length = 399

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 58/206 (28%), Gaps = 41/206 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDE 69
           +R       + V +SGG DS      L     +     +             L + A   
Sbjct: 25  LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSGKGACCAEGLVDAAG-- 82

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEH 113
                 +C +L + H VV +++               +       +   RE ++A +   
Sbjct: 83  ------ICEQLGVPHHVVDFRDHFRAQIVDFLVDGYAAGVTPLPCSRCNREVKFAPMLAW 136

Query: 114 AKTI-NATLIMTAH----TFDDQLETV--------YMRSQRDYAEKGMGLSGMCDTILYD 160
           A+       + T H       D  + +          +  R    +      + D +  +
Sbjct: 137 AREQRGLERLATGHYARVRRADAADPLPVPGDGRGRHQLLRGLDARKDQSYFLYD-LPQE 195

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNI 186
           +   +  P     + D R    +  +
Sbjct: 196 VLGRLVFPLGELTKPDTRQEAERHGL 221


>gi|320536235|ref|ZP_08036280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema phagedenis F0421]
 gi|320146893|gb|EFW38464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Treponema phagedenis F0421]
          Length = 359

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 55/195 (28%), Gaps = 43/195 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVRYVS 74
            ILV +SGG DS      L     + S   ++         +        + + ++    
Sbjct: 2   KILVGLSGGVDSAVAAKLLLEQGHEVSGVTMQ--------MISPVGEIIKSQEQDIADAR 53

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTIN 118
            + + L I    +  +++  +  +   A                 + ++  + + A    
Sbjct: 54  AIANTLGIDFFTLDLRSAFREEIMNYFAETYKQGLTPNPCFICNKKMKFRRLLDAALERG 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL-------WISRPFLR 171
              I T H          MR  +      +  S       Y L L        I  P   
Sbjct: 114 FDAIATGHYAQ------IMRDLKTGRYLLLQGSDSKKDQSYFLALLNQFQLAHIMFPLGN 167

Query: 172 CRREDIRSFLLQRNI 186
             + ++R    +  +
Sbjct: 168 YTKPEVRKIAEKAGL 182


>gi|239636675|ref|ZP_04677677.1| ExsB protein [Staphylococcus warneri L37603]
 gi|239598030|gb|EEQ80525.1| ExsB protein [Staphylococcus warneri L37603]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +L     I+V  SGG DS   L        D        + ++ ++  R     E+   
Sbjct: 4  HTLDQNKAIVV-FSGGQDSTTCLFYAKKHFKD-------VTLVTFNYGQRH--DTEIEVA 53

Query: 74 SDVCSRLRIAHSVVS 88
            +     + H ++ 
Sbjct: 54 KKIAQEQNVEHHILD 68


>gi|269214555|ref|ZP_05986816.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria lactamica ATCC 23970]
 gi|269209446|gb|EEZ75901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria lactamica ATCC 23970]
          Length = 367

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 52/194 (26%), Gaps = 36/194 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS---- 74
           P++I+V +SGG DS      L           ++               D   Y S    
Sbjct: 7   PSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIKQD 56

Query: 75  -----DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEH 113
                 V   + I   +V++                +A R          E ++    ++
Sbjct: 57  SFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDY 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A    A  I T H    ++        +           +     + L   I  P     
Sbjct: 117 AVGQGADTIATGHYARKEVCNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIF-PLGGLE 175

Query: 174 REDIRSFLLQRNIS 187
           + ++R    +  + 
Sbjct: 176 KPEVRRLAAEFKLP 189


>gi|161502333|ref|YP_001569445.1| GMP synthase [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|226739715|sp|A9MHM5|GUAA_SALAR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|160863680|gb|ABX20303.1| hypothetical protein SARI_00366 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVMDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|148241148|ref|YP_001226305.1| GMP synthase [Synechococcus sp. RCC307]
 gi|147849458|emb|CAK26952.1| GMP synthase (glutamine-hydrolyzing) [Synechococcus sp. RCC307]
          Length = 563

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           VR+ V    +L+A+SGG DS  L   LH  + D+
Sbjct: 253 VRARVGSKRVLLALSGGVDSSTLAFLLHKAIGDQ 286


>gi|94501253|ref|ZP_01307775.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanobacter sp. RED65]
 gi|94426680|gb|EAT11666.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oceanobacter sp. RED65]
          Length = 524

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V    +L+ +SGG DS  +   LH  + D      + + + VD+  LR+   D   
Sbjct: 220 VREQVGERKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRKNEGD--- 270

Query: 72  YVSD-VCSRLRIAHSVVSWKNSK---PQTGLMAAAREARY-------ALISEHAKTIN-A 119
            V D     + +   V+          +   +    + R         +  E A  I   
Sbjct: 271 MVMDMFAKNMGVK--VIRADAEDLFLGKLNGIDDPEKKRKVIGNTFIDVFDEEAGKIKEV 328

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + +      +        +  D+ + +  P     ++++R 
Sbjct: 329 DFLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMELVEPLRELFKDEVRK 385

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 386 IGLELGLPY 394


>gi|331648201|ref|ZP_08349291.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli M605]
 gi|330912279|gb|EGH40789.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli AA86]
 gi|331043061|gb|EGI15201.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli M605]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|254577303|ref|XP_002494638.1| ZYRO0A06160p [Zygosaccharomyces rouxii]
 gi|238937527|emb|CAR25705.1| ZYRO0A06160p [Zygosaccharomyces rouxii]
          Length = 523

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 74/202 (36%), Gaps = 30/202 (14%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I++    +R+LV P A ++ AVSGG DS      +   + DR      F A+ VD+  
Sbjct: 205 NFIDTEIQRIRNLVGPTAEVIGAVSGGVDSTVASKLMTEAIGDR------FHALLVDNGV 258

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNS--KPQTGLMAAAREA------------R 106
           LR     E   V + +   L I  +VV           G+    ++             R
Sbjct: 259 LRLN---EAAMVKETLGDGLGINLTVVDASEEFLTKLKGVEDPEKKRKIIGNTFIHVFER 315

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            A   +     +   ++    + D +E++  +      +    + G+ +    D+ L + 
Sbjct: 316 EAAKIKPRDGKDIEFLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLE----DMKLKLI 371

Query: 167 RPFLRCRREDIRSFLLQRNISW 188
            P     ++++R       I  
Sbjct: 372 EPLRELFKDEVRHLGELLGIPH 393


>gi|163857039|ref|YP_001631337.1| tRNA-specific 2-thiouridylase MnmA [Bordetella petrii DSM 12804]
 gi|205811276|sp|A9IQK6|MNMA_BORPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163260767|emb|CAP43069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella petrii]
          Length = 376

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 52/201 (25%), Gaps = 46/201 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     +     +K               D+  Y     
Sbjct: 12  KGRRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNW----------EDDDDSEYCSTRQ 61

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISE 112
                + V   + +    V++             R                E ++    +
Sbjct: 62  DLLDAASVADLVGVDFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 121

Query: 113 HAKTINATLIMTAHTFDDQL-------ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           HA T+ A  I T H    +        E   +++     ++   L  +    L       
Sbjct: 122 HAMTLGAEHIATGHYARVRAIAGAHGREYQLLKALDGSKDQSYFLHRLNQAQLSRT---- 177

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P     + ++R       +
Sbjct: 178 LFPLGEIHKTEVRRIAHDIGL 198


>gi|46579220|ref|YP_010028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|81404995|sp|Q72DX2|MNMA_DESVH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46448633|gb|AAS95287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233051|gb|ADP85905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfovibrio vulgaris RCH1]
          Length = 346

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 36/189 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG+DS+  L+ L            +F        +  T  D V  +  +C RL 
Sbjct: 3   IAVAMSGGTDSLFALVLLKEQGQQVCGLHARF--------IPPTGHDPVPDIRAMCDRLG 54

Query: 82  IAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHAKTINATLIMTA 125
           +   VV    +  +                   A      ++ L+++ A  + A  + T 
Sbjct: 55  VDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAVHLATG 114

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR------PFLRCRREDIRS 179
           H          +R  R       G+    D   +   +  +R      P    R+E +R 
Sbjct: 115 HYAR------LLRHPRWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAVRG 168

Query: 180 FLLQRNISW 188
            L +R+I  
Sbjct: 169 ELARRSIVP 177


>gi|16761427|ref|NP_457044.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29140876|ref|NP_804218.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|167549472|ref|ZP_02343231.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168232074|ref|ZP_02657132.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168243285|ref|ZP_02668217.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261453|ref|ZP_02683426.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168817736|ref|ZP_02829736.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194450983|ref|YP_002046570.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194470386|ref|ZP_03076370.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197247502|ref|YP_002147463.1| GMP synthase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|198245648|ref|YP_002216575.1| GMP synthase [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|205353612|ref|YP_002227413.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857920|ref|YP_002244571.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213160878|ref|ZP_03346588.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213425340|ref|ZP_03358090.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213622893|ref|ZP_03375676.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213852551|ref|ZP_03382083.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|238913647|ref|ZP_04657484.1| GMP synthase [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|289824931|ref|ZP_06544340.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|24211756|sp|Q8Z4Q3|GUAA_SALTI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739714|sp|B5F185|GUAA_SALA4 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739716|sp|B5FR52|GUAA_SALDC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739717|sp|B5R569|GUAA_SALEP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739718|sp|B5RCX9|GUAA_SALG2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739719|sp|B4TD82|GUAA_SALHS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|25293822|pir||AD0820 GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503727|emb|CAD02712.1| GMP synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136501|gb|AAO68067.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|194409287|gb|ACF69506.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456750|gb|EDX45589.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197211205|gb|ACH48602.1| GMP synthetase [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197940164|gb|ACH77497.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205273393|emb|CAR38365.1| GMP synthase [glutamine-hydrolyzing] [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325488|gb|EDZ13327.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205333635|gb|EDZ20399.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337568|gb|EDZ24332.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344986|gb|EDZ31750.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349448|gb|EDZ36079.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709723|emb|CAR34073.1| GMP synthase [glutamine-hydrolyzing] [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|320087003|emb|CBY96772.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322613748|gb|EFY10687.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619509|gb|EFY16385.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625014|gb|EFY21843.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629543|gb|EFY26319.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634026|gb|EFY30763.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635536|gb|EFY32247.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639889|gb|EFY36566.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644411|gb|EFY40952.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649136|gb|EFY45576.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655225|gb|EFY51534.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658272|gb|EFY54538.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664273|gb|EFY60470.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669440|gb|EFY65589.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673167|gb|EFY69273.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676559|gb|EFY72627.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683309|gb|EFY79323.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685805|gb|EFY81798.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323192519|gb|EFZ77748.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199564|gb|EFZ84655.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204661|gb|EFZ89659.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208109|gb|EFZ93054.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210167|gb|EFZ95068.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217034|gb|EGA01756.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219225|gb|EGA03721.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225454|gb|EGA09685.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229277|gb|EGA13401.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235408|gb|EGA19492.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237406|gb|EGA21469.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245160|gb|EGA29161.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248863|gb|EGA32789.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323253151|gb|EGA36983.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255384|gb|EGA39152.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260592|gb|EGA44202.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266368|gb|EGA49856.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269801|gb|EGA53251.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326624330|gb|EGE30675.1| GMP synthase [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326628711|gb|EGE35054.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVMDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|332981330|ref|YP_004462771.1| PP-loop domain-containing protein [Mahella australiensis 50-1 BON]
 gi|332699008|gb|AEE95949.1| PP-loop domain protein [Mahella australiensis 50-1 BON]
          Length = 289

 Score = 43.7 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 53/181 (29%), Gaps = 39/181 (21%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDVCSRL 80
           ++A SGG DS  LL   H VL D         A++     R +   E  +    ++  ++
Sbjct: 27  VIAYSGGVDSTFLLKVAHDVLGD------NVIAVTA----RSSTYPEREFNEACELVKQI 76

Query: 81  RIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
              H V+  +  + +             ++  +  I + A       ++     DD    
Sbjct: 77  GAKHVVIISEELEIEGFRSNPVNRCYYCKKELFNKIWDIANEHGINHVLDGSNVDD---- 132

Query: 135 VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCEDP 192
                                 +     L +  P       + DIR+      +     P
Sbjct: 133 ---------------TDDFRPGMKAAHELGVESPLRESGMTKSDIRALSKAMGLPTWNKP 177

Query: 193 S 193
           S
Sbjct: 178 S 178


>gi|329924587|ref|ZP_08279632.1| GMP synthase (glutamine-hydrolyzing) [Paenibacillus sp. HGF5]
 gi|328940597|gb|EGG36918.1| GMP synthase (glutamine-hydrolyzing) [Paenibacillus sp. HGF5]
          Length = 309

 Score = 43.7 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + VR  +R +V    +L A+SGG DS  + + +H  + D      + + + +DH L
Sbjct: 206 DQVRE-IREVVGEKKVLCALSGGVDSSVVAMLIHKAIGD------QLTCMFIDHGL 254


>gi|261363616|ref|ZP_05976499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria mucosa ATCC 25996]
 gi|288568144|gb|EFC89704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria mucosa ATCC 25996]
          Length = 367

 Score = 43.7 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 51/196 (26%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 5   QQPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 54

Query: 75  --------------------DVCSRL--RIAHSVVSWKNSKPQTGLMAAA-REARYALIS 111
                               +  ++    +    +   ++            E ++    
Sbjct: 55  QDSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +   +       +     + L   I  P   
Sbjct: 115 DYAIEQGADTIATGHYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERAIF-PLGD 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    + N+ 
Sbjct: 174 LEKPEVRRLAAEFNLP 189


>gi|261404771|ref|YP_003241012.1| GMP synthase large subunit [Paenibacillus sp. Y412MC10]
 gi|261281234|gb|ACX63205.1| GMP synthase, large subunit [Paenibacillus sp. Y412MC10]
          Length = 512

 Score = 43.7 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + VR  +R +V    +L A+SGG DS  + + +H  + D      + + + +DH L
Sbjct: 206 DQVRE-IREVVGEKKVLCALSGGVDSSVVAMLIHKAIGD------QLTCMFIDHGL 254


>gi|333002302|gb|EGK21866.1| GMP synthase [Shigella flexneri K-272]
 gi|333016125|gb|EGK35457.1| GMP synthase [Shigella flexneri K-227]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|167461682|ref|ZP_02326771.1| Aluminum resistance protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322383446|ref|ZP_08057226.1| pre-queuosine 0 synthase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321152247|gb|EFX45073.1| pre-queuosine 0 synthase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 32/125 (25%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           I+V  SGG DS   L  AL      R FG+++   ++ D+  R +   E++    +   L
Sbjct: 7   IVV-FSGGQDSTTCLFWAL------RQFGEVE--TVTFDYGQRHS--LEMKVAKSIAEEL 55

Query: 81  RIAHSVVSW---------KNSKPQTGLMAA----------AREARY-ALISEHAKTINAT 120
            + H+V+             ++    +              R   +    +  AK   A 
Sbjct: 56  GLKHTVLDMSLLNQLAPSALTRKDMAIEEKEGEPPSTFVDGRNMLFLTFAAVMAKQAGAR 115

Query: 121 LIMTA 125
            ++T 
Sbjct: 116 HLVTG 120


>gi|126698878|ref|YP_001087775.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile 630]
 gi|123174593|sp|Q18BE2|MNMA_CLOD6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|115250315|emb|CAJ68137.1| transfer RNA-specific 2-thiouridylase MnmA [Clostridium difficile]
          Length = 361

 Score = 43.7 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 36/138 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHS-----------VLSDRSFGKIKFSAISVDHCLRE 64
           +     +++ +SGG DS      L             +  D    +I+    S+      
Sbjct: 1   MFMNKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSL------ 54

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-ARYA 108
           +A ++ R V++   ++ I   V++++    +                    A  +  ++ 
Sbjct: 55  SAVEDARRVAN---KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFD 111

Query: 109 LISEHAKTINATLIMTAH 126
              + A+ I    + T H
Sbjct: 112 DFYKKARQIGCDYVATGH 129


>gi|253576605|ref|ZP_04853933.1| exsB protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844019|gb|EES72039.1| exsB protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 222

 Score = 43.7 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     ++V  SGG DS   L  A+            +  A++ D+  R   K E+    
Sbjct: 2  LKKEKAVVV-FSGGQDSTTCLFWAIQQFG--------EVEAVTFDYGQRH--KLEIECAK 50

Query: 75 DVCSRLRIAHSVVS 88
           + + L I H+V+ 
Sbjct: 51 SITAELGIKHTVLD 64


>gi|296814164|ref|XP_002847419.1| GMP synthase [Arthroderma otae CBS 113480]
 gi|238840444|gb|EEQ30106.1| GMP synthase [Arthroderma otae CBS 113480]
          Length = 541

 Score = 43.7 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 12/92 (13%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
             ++     +R++V     ++ AVSGG DS      +   + DR      F A+ VD+  
Sbjct: 218 KFVDKELARIRAMVGEHGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDNGV 271

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNS 92
           LR     E   V + +   L I  +V+   + 
Sbjct: 272 LRLN---EAEIVRETLTKSLGINLTVIDASDK 300


>gi|221633062|ref|YP_002522287.1| tRNA methyl transferase [Thermomicrobium roseum DSM 5159]
 gi|221155991|gb|ACM05118.1| tRNA methyl transferase [Thermomicrobium roseum DSM 5159]
          Length = 370

 Score = 43.7 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 56/220 (25%), Gaps = 65/220 (29%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC--- 77
            +LVA+SGG DS      L     +     ++               D    +  VC   
Sbjct: 11  RVLVALSGGVDSAVTAYLLKQAGWEPVGIHLRLF-------------DAAPGLDGVCCGD 57

Query: 78  ----------SRLRIAHSVVSWKNSKPQT----GLMAAAREA------------RYALIS 111
                     +++ I   V   +    Q      +   AR              R   + 
Sbjct: 58  VAAADARAVAAQIGIPFFVRDLRPEFEQEVVAPTVEEYARARTPNPCVFCNHRVRIPALL 117

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR---- 167
           E A+ +    + T H              R  A  G            D +  + R    
Sbjct: 118 ELAEALGIRFVATGH------------YVRKVATPGGWRLAEARDAQRDQSYVLYRLTAD 165

Query: 168 -------PFLRCRREDIRSFLLQRNISWCEDPSNTDDRFE 200
                  P     +  +R+   +  +     PS+ D  F 
Sbjct: 166 QLERLLFPLGEYDKPTVRAIAQEAGLFVARKPSSVDLCFA 205


>gi|72391078|ref|XP_845833.1| GMP synthase [Trypanosoma brucei TREU927]
 gi|62176460|gb|AAX70568.1| GMP synthase, putative [Trypanosoma brucei]
 gi|70802369|gb|AAZ12274.1| GMP synthase, putative [Trypanosoma brucei brucei strain 927/4
           GUTat10.1]
          Length = 658

 Score = 43.7 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 7   ESVRFFVRSLVYPAHIL-VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           +++R           +L +A SGG DS    + L   L     G  +   I +DH   R 
Sbjct: 210 KALRLIRERTTQGQKVLCLA-SGGVDSTVCAVLLLKAL-----GPERVVCIHIDHGFMRL 263

Query: 65  TAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREARYA 108
               EV  V+ +  + + +     + + S+  T   A   +  Y 
Sbjct: 264 NESQEV--VAALRAAGVNVTLIDATKQFSEATTEFPAKRGKGAYQ 306


>gi|308274462|emb|CBX31061.1| tRNA-specific 2-thiouridylase mnmA [uncultured Desulfobacterium
           sp.]
          Length = 354

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 59/198 (29%), Gaps = 40/198 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV----DHCLRETAKD---EVR 71
              I +A+SGG DS+     L +            + I      +H   + +     E++
Sbjct: 2   KEKIAIALSGGVDSLVAAYLLKN-------QGYDVTGIHFITGYEHGKVQDSGKNNPELQ 54

Query: 72  YVSDVCSR--LRIAHSVVSWKNSKPQTGLMAAAREA--------------RYALISEHAK 115
            ++ +  +  + I       +  +          +A              ++ ++ E AK
Sbjct: 55  KITQLAKQIEINIEFFDCRTQFKQIVINYFTQTYKAGKTPNPCIICNQSIKFGVVLEFAK 114

Query: 116 TINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            I  T + T H     T  D          +    K      +       L+  I  P  
Sbjct: 115 KIGCTFLATGHYAGKMTGRD----GMFHLLKGADTKKDQSYFLSMLSQKQLSCAIF-PLY 169

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++     ++ +  
Sbjct: 170 GFTKKEVIRLSEEKGLHP 187


>gi|298675751|ref|YP_003727501.1| PP-loop domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288739|gb|ADI74705.1| PP-loop domain-containing protein [Methanohalobium evestigatum
           Z-7303]
          Length = 267

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 55/202 (27%), Gaps = 46/202 (22%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
            P+++++  +        +++A SGG DS  LL  L           I            
Sbjct: 5   EPVDTLKEVI---AKKGPMVIAFSGGVDS-SLLSLLAKETLGNQHLCILL---------- 50

Query: 64  ETAKDEVRY----VSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEH 113
             +    ++       + +   +   ++ +K                  ++A   L+  +
Sbjct: 51  -DSPLVPQHSIEQAKKISNEFDLNFEILPFKALNKSGIVDNPKDRCYHCKKASSQLLKCY 109

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR-- 171
           A       I       D  E                       +       I+ PF+   
Sbjct: 110 ALNKGFNCIADGTNLSDLGE-------------------YRPGLAAGEEENIAHPFVDAE 150

Query: 172 CRREDIRSFLLQRNISWCEDPS 193
             + DIR    +R   +   PS
Sbjct: 151 ISKPDIRKIAKERGYDFWNLPS 172


>gi|259418809|ref|ZP_05742726.1| ExsB protein [Silicibacter sp. TrichCH4B]
 gi|259345031|gb|EEW56885.1| ExsB protein [Silicibacter sp. TrichCH4B]
          Length = 233

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L        ++    ++    +S D+  R   + EV +      RL +   
Sbjct: 7  CSGGLDSVSLAHI---TANEHQLTRL----VSFDYGQRH--RKEVDFAEAAAKRLGVPFH 57

Query: 86 VVSWKN 91
          ++  + 
Sbjct: 58 LIDMRG 63


>gi|225677747|gb|EEH16031.1| GMP synthase [Paracoccidioides brasiliensis Pb03]
          Length = 658

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 30/200 (15%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE +R  V        ++ AVSGG DS      +   + DR      F A+ VD+  LR 
Sbjct: 225 IERIRKLV---GEKGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDNGVLRL 275

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVV--SWKNSKPQTGLMAAAREARY---ALISEHAKTI- 117
               E   V + +   L +  +VV  S +      G+       R        E  +   
Sbjct: 276 N---EAAIVKETLTRHLGVNLTVVDASERFLGKLKGIKDDPERKRKVIGNTFIEVFQEEA 332

Query: 118 -NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------LYDLNLWISR 167
                       + ++E +   +      + +   G   TI         L  ++L +  
Sbjct: 333 KKIAAAAKGSHNEGEIEWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLEGMHLKLIE 392

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R   +Q  I 
Sbjct: 393 PLRELFKDEVRELGVQLGIP 412


>gi|218234594|ref|YP_002366123.1| exsB protein [Bacillus cereus B4264]
 gi|254764305|sp|B7HH96|QUEC_BACC4 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|218162551|gb|ACK62543.1| protein ExsB [Bacillus cereus B4264]
          Length = 220

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ ++  R   K E+   +++   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEIDCAAEIAKEL 55

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 56 GIKHTVLD 63


>gi|30019491|ref|NP_831122.1| aluminum resistance protein [Bacillus cereus ATCC 14579]
 gi|206967667|ref|ZP_03228623.1| exsB protein [Bacillus cereus AH1134]
 gi|296502021|ref|YP_003663721.1| aluminum resistance protein [Bacillus thuringiensis BMB171]
 gi|81435436|sp|Q81G69|QUEC_BACCR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|29895035|gb|AAP08323.1| Aluminum resistance protein [Bacillus cereus ATCC 14579]
 gi|206736587|gb|EDZ53734.1| exsB protein [Bacillus cereus AH1134]
 gi|296323073|gb|ADH06001.1| aluminum resistance protein [Bacillus thuringiensis BMB171]
 gi|326939064|gb|AEA14960.1| aluminum resistance protein [Bacillus thuringiensis serovar
          chinensis CT-43]
          Length = 220

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ ++  R   K E+   +++   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEIDCAAEIAKEL 55

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 56 GIKHTVLD 63


>gi|33864583|ref|NP_896142.1| GMP synthase [Synechococcus sp. WH 8102]
 gi|44887992|sp|Q7UA53|GUAA_SYNPX RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33632106|emb|CAE06562.1| GMP synthase (glutamine-hydrolysing) [Synechococcus sp. WH 8102]
          Length = 528

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           I+     VR  V    +L+A+SGG DS  L   L   + D+
Sbjct: 211 IDEAVAVVREQVGEKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|42780532|ref|NP_977779.1| exsB protein [Bacillus cereus ATCC 10987]
 gi|47566228|ref|ZP_00237256.1| exsB protein [Bacillus cereus G9241]
 gi|49479999|ref|YP_035565.1| aluminum resistance protein [Bacillus thuringiensis serovar
          konkukian str. 97-27]
 gi|52143996|ref|YP_082831.1| aluminum resistance protein [Bacillus cereus E33L]
 gi|196040637|ref|ZP_03107936.1| protein ExsB [Bacillus cereus NVH0597-99]
 gi|196046480|ref|ZP_03113705.1| exsB protein [Bacillus cereus 03BB108]
 gi|225863303|ref|YP_002748681.1| exsB protein [Bacillus cereus 03BB102]
 gi|301052979|ref|YP_003791190.1| putative aluminum resistance protein [Bacillus anthracis CI]
 gi|81396767|sp|Q6HLK6|QUEC_BACHK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81569836|sp|Q73BG0|QUEC_BACC1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81688847|sp|Q63E31|QUEC_BACCZ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189039061|sp|A0RBG1|QUEC_BACAH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764304|sp|C1EM49|QUEC_BACC3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|42736452|gb|AAS40387.1| exsB protein [Bacillus cereus ATCC 10987]
 gi|47556781|gb|EAL15112.1| exsB protein [Bacillus cereus G9241]
 gi|49331555|gb|AAT62201.1| possible aluminum resistance protein [Bacillus thuringiensis
          serovar konkukian str. 97-27]
 gi|51977465|gb|AAU19015.1| possible aluminum resistance protein [Bacillus cereus E33L]
 gi|196022664|gb|EDX61346.1| exsB protein [Bacillus cereus 03BB108]
 gi|196028427|gb|EDX67035.1| protein ExsB [Bacillus cereus NVH0597-99]
 gi|225785866|gb|ACO26083.1| protein ExsB [Bacillus cereus 03BB102]
 gi|300375148|gb|ADK04052.1| possible aluminum resistance protein [Bacillus cereus biovar
          anthracis str. CI]
 gi|324325457|gb|ADY20717.1| aluminum resistance protein [Bacillus thuringiensis serovar
          finitimus YBT-020]
          Length = 220

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ ++  R   K E+   +++   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEIDCAAEIAKEL 55

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 56 GIKHTVLD 63


>gi|320175070|gb|EFW50183.1| GMP synthase [Shigella dysenteriae CDC 74-1112]
 gi|320185207|gb|EFW59987.1| GMP synthase [Shigella flexneri CDC 796-83]
 gi|332092793|gb|EGI97862.1| GMP synthase [Shigella boydii 3594-74]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|256752949|ref|ZP_05493777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748170|gb|EEU61246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 376

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 61/395 (15%), Positives = 127/395 (32%), Gaps = 88/395 (22%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S      FF++       ++V +SGG DS      L             F  I V  
Sbjct: 1   MRESTRRLENFFMK---KNNRVVVGMSGGVDSSVSAYLLKEQG---------FDVIGVTM 48

Query: 61  CLRETAKDEVRYV-------------SDVCSRLRIAHSVVSWKNSKPQT----------- 96
            + +   +E   V               V +++ I + V+++K+   +            
Sbjct: 49  QIWQDKDEEAVRVEGGCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLK 108

Query: 97  ----GLMAAAREARYALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAE 145
                   A  +  Y    E  K    I+A  + T H      D++     ++   D ++
Sbjct: 109 GRTPNPCIACNK--YIKFEELLKRAWMIDAYYVATGHYAVKEYDEERGRYLLKKSVDTSK 166

Query: 146 KGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPS 193
                L  +  T L      I  P  + +++++R       +            +  D  
Sbjct: 167 DQTYVLYNLTQTQLE----HILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTD-- 220

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N   +F R   +  ++  +          F+D R +       +I   +       I++ 
Sbjct: 221 NDYGKFIRENAKEEIKPGE----------FRDTRGRFLGYHKGIIHYTIGQRKGLGISVG 270

Query: 254 QDI--LNIDSTLLFYLLRVSAAICGGQI-----SLPGYRSMERVMLFLKSGKRGCVSIGR 306
           + +  ++ID+     +L     + G ++     +      +ER M  +K+  R       
Sbjct: 271 KPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISIDKLEREM-RVKAKIRYNAKEQD 329

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTV-WDG 340
            VI    +     +   + P   + P ++ V +DG
Sbjct: 330 AVIRPLEDGRVFVK--FDNPQRAITPGQSVVFYDG 362


>gi|240167851|ref|ZP_04746510.1| GMP synthase [Mycobacterium kansasii ATCC 12478]
          Length = 518

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 29/195 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE VR     +    H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR 
Sbjct: 208 IEQVRA---QIGDDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRA 258

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAK 115
             + +V    D  +        V   +         S P+       R+   A  S    
Sbjct: 259 GERAQVE--RDFVAATGANLVTVDAADTFLAALSGVSNPEGKRKIIGRQFIRAFESAVRD 316

Query: 116 TINA---TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            ++      ++    + D +E+             +        +  DL   +  P    
Sbjct: 317 VLDGREVEFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPGDLKFKLVEPLRLL 371

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  + 
Sbjct: 372 FKDEVRAVGRELGLP 386


>gi|295657447|ref|XP_002789292.1| GMP synthase [Paracoccidioides brasiliensis Pb01]
 gi|226283962|gb|EEH39528.1| GMP synthase [Paracoccidioides brasiliensis Pb01]
          Length = 543

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 14/85 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE +R  V        ++ AVSGG DS      +   + DR      F A+ VD+  LR 
Sbjct: 225 IERIRKLV---GEKGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDNGVLRL 275

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVS 88
               E   V + +   L +  +VV 
Sbjct: 276 N---EAAIVKETLTRHLGVNLTVVD 297


>gi|200388214|ref|ZP_03214826.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605312|gb|EDZ03857.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVMDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|156974113|ref|YP_001445020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio harveyi ATCC BAA-1116]
 gi|166235090|sp|A7MSW1|MNMA_VIBHB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|156525707|gb|ABU70793.1| hypothetical protein VIBHAR_01824 [Vibrio harveyi ATCC BAA-1116]
          Length = 374

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLDIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            ++A  I   H
Sbjct: 119 VLDADYIAMGH 129


>gi|170718124|ref|YP_001785155.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 2336]
 gi|205816854|sp|B0UWF2|MNMA_HAES2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|168826253|gb|ACA31624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus somnus 2336]
          Length = 383

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 32/135 (23%), Gaps = 36/135 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++  +SGG DS      L           +K               D+  Y     
Sbjct: 22  SKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAN 71

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALIS 111
                  VC +L I    +++              E +                  A + 
Sbjct: 72  DLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLE 131

Query: 112 EHAKTINATLIMTAH 126
              + + A  I T H
Sbjct: 132 YAVEDLGADYIATGH 146


>gi|325969442|ref|YP_004245634.1| exsB protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708645|gb|ADY02132.1| exsB protein [Vulcanisaeta moutnovskia 768-28]
          Length = 495

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 35/129 (27%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +++A SGG DS       L              + +  ++  R     E R +  +    
Sbjct: 255 LVIA-SGGLDSTTAATYLLKQ--------GYDVALLHFNYGHRAE-TQEDRAIKRIAEFH 304

Query: 81  RIAHSVVSW------------------KNSKPQTGLMAA-----AREARYALISE-HAKT 116
            +    V+                   +  + + G   A     AR   +  ++   A+ 
Sbjct: 305 NVPLFEVNMDFFKIVRHSPLLGDGEINRVDEGREGAEFAHEWVPARNFVFIALATAIAEA 364

Query: 117 INATLIMTA 125
                I T 
Sbjct: 365 YGYDYIATG 373


>gi|315453196|ref|YP_004073466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter felis ATCC 49179]
 gi|315132248|emb|CBY82876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter felis ATCC 49179]
          Length = 346

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 56/184 (30%), Gaps = 35/184 (19%)

Query: 24  VAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           VAV  SGG DS      L     +     +K       H   E     +R   +V   L 
Sbjct: 3   VAVLMSGGVDSSYSAYLLQQAGHELLGVYLKL------HGKEEKHALYIRNCQEVAKFLN 56

Query: 82  IAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTINATLIMTA 125
           I   VV  +    Q    A   A E               ++ L  E A       I T 
Sbjct: 57  IPFEVVDLQAEFKQGVYDAFVQAYEQGQTPNPCALCNPLMKFGLGLEFALNQGCEKIATG 116

Query: 126 HTFDDQLETV--YMRSQRD---YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           H    +LE V   +R +       ++   L  +    +      +  P     + +I+  
Sbjct: 117 HYA--RLEKVGGVLRIKEAKDTSKDQSYFLYALPQKAI----DRLLFPLGDLLKSEIKPL 170

Query: 181 LLQR 184
            L++
Sbjct: 171 ALEK 174


>gi|297201830|ref|ZP_06919227.1| GMP synthase domain-containing protein [Streptomyces sviceus ATCC
           29083]
 gi|197717302|gb|EDY61336.1| GMP synthase domain-containing protein [Streptomyces sviceus ATCC
           29083]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 28/190 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +RS V     +  +SGG DS        +          + + + VDH L R+   ++V 
Sbjct: 217 IRSRVGDKRAICGLSGGVDS------AVAAALVARAIGDQLTCVYVDHGLMRKGETEQVE 270

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYAL----ISEHAKTIN 118
              D  +   +   VV  +          S P+       RE             A    
Sbjct: 271 --KDFVAATGVKLVVVDAEERFLTALKGVSDPEEKRKIIGREFIRVFEQAQAEIIADEGP 328

Query: 119 ATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           A   +   T   D +E+             +        +  DL   +  P  +  ++++
Sbjct: 329 AVEFLVQGTLYPDVVES-----GGGTGTANIKSHHNVGGLPEDLEFQLIEPLRKLFKDEV 383

Query: 178 RSFLLQRNIS 187
           R    +  + 
Sbjct: 384 RMVGQELGLP 393


>gi|27366203|ref|NP_761731.1| tRNA-specific 2-thiouridylase MnmA [Vibrio vulnificus CMCP6]
 gi|30173408|sp|Q8CWJ6|MNMA_VIBVU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|27362403|gb|AAO11258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus CMCP6]
          Length = 374

 Score = 43.7 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 56/205 (27%), Gaps = 59/205 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW----------EEDDDSEYCTAAEDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    +++ +           A  +  R               A +   
Sbjct: 57  ADAQAVCDKLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG------MGLSGMCD------TILYDL 161
            + ++A  I   H             +R + E G       GL G  D      T+ ++ 
Sbjct: 117 DEVLDADYIAMGH-----------YVRRSFPENGEKPQMLRGLDGNKDQSYFLYTLSHEQ 165

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI 186
                 P     + ++R    ++ +
Sbjct: 166 VARSLFPVGDLEKPEVRRIAEEQGL 190


>gi|317058226|ref|ZP_07922711.1| GMP synthase [Fusobacterium sp. 3_1_5R]
 gi|313683902|gb|EFS20737.1| GMP synthase [Fusobacterium sp. 3_1_5R]
          Length = 369

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 22/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      +H  + D      + + I VD   LR+
Sbjct: 59  IESTIKAIQEKVGDKKVILGLSGGVDSSVAATLIHRAIGD------QLTCIFVDTGLLRK 112

Query: 65  TAKDEVRYV--SDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAK 115
                V  V   +    + I       +        S P+       +E       E  K
Sbjct: 113 NEAKTVMEVYSENF--HMNIKCVDAEERFLSKLKGVSDPEQKRKIIGKEFIEVFNEEAKK 170

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +     + D +E+V ++      +    + G+ +    D+   +  P     ++
Sbjct: 171 FEDAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE----DMKFQLLEPLRELFKD 226

Query: 176 DIRSFLLQRNISW 188
           ++R    Q  I  
Sbjct: 227 EVREVGRQLGIPH 239


>gi|260494072|ref|ZP_05814203.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
 gi|260198218|gb|EEW95734.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 35/183 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25  KVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81  RIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLIMT 124
            I H V+  ++   +                       R  ++  + +   +  A+ + T
Sbjct: 73  GIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHIKFGKMLDFILSKGASFMAT 132

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H       T          +            I  D    I  P     +  +R    Q
Sbjct: 133 GHY------TKLKNGLLSVGDDSNKDQVYFLSQIQKDRLNKIIFPVGDLEKSKLRELAEQ 186

Query: 184 RNI 186
             +
Sbjct: 187 LGV 189


>gi|257466980|ref|ZP_05631291.1| GMP synthase [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918119|ref|ZP_07914359.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691994|gb|EFS28829.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 512

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 22/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      +H  + D      + + I VD   LR+
Sbjct: 202 IESTIKAIQEKVGDKKVILGLSGGVDSSVAATLIHRAIGD------QLTCIFVDTGLLRK 255

Query: 65  TAKDEVRYV--SDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAK 115
                V  V   +    + I       +        S P+       +E       E  K
Sbjct: 256 NEAKTVMEVYSENF--HMNIKCVDAEERFLSKLKGVSDPEQKRKIIGKEFIEVFNEEAKK 313

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +     + D +E+V ++      +    + G+ +    D+   +  P     ++
Sbjct: 314 FEDAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE----DMKFQLLEPLRELFKD 369

Query: 176 DIRSFLLQRNISW 188
           ++R    Q  I  
Sbjct: 370 EVREVGRQLGIPH 382


>gi|257451665|ref|ZP_05616964.1| GMP synthase [Fusobacterium sp. 3_1_5R]
          Length = 315

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 22/193 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      +H  + D      + + I VD   LR+
Sbjct: 5   IESTIKAIQEKVGDKKVILGLSGGVDSSVAATLIHRAIGD------QLTCIFVDTGLLRK 58

Query: 65  TAKDEVRYV--SDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAK 115
                V  V   +    + I       +        S P+       +E       E  K
Sbjct: 59  NEAKTVMEVYSENF--HMNIKCVDAEERFLSKLKGVSDPEQKRKIIGKEFIEVFNEEAKK 116

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +A  +     + D +E+V ++      +    + G+ +    D+   +  P     ++
Sbjct: 117 FEDAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE----DMKFQLLEPLRELFKD 172

Query: 176 DIRSFLLQRNISW 188
           ++R    Q  I  
Sbjct: 173 EVREVGRQLGIPH 185


>gi|256027773|ref|ZP_05441607.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
           [Fusobacterium sp. D11]
 gi|289765727|ref|ZP_06525105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
 gi|289717282|gb|EFD81294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. D11]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 35/183 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25  KVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81  RIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLIMT 124
            I H V+  ++   +                       R  ++  + +   +  A+ + T
Sbjct: 73  GIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHIKFGKMLDFILSKGASFMAT 132

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H       T          +            I  D    I  P     +  +R    Q
Sbjct: 133 GHY------TKLKNGLLSVGDDSNKDQVYFLSQIQKDRLNKIIFPVGDLEKSKLRELAEQ 186

Query: 184 RNI 186
             +
Sbjct: 187 LGV 189


>gi|237744375|ref|ZP_04574856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
 gi|229431604|gb|EEO41816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Fusobacterium sp. 7_1]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 35/183 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25  KVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81  RIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLIMT 124
            I H V+  ++   +                       R  ++  + +   +  A+ + T
Sbjct: 73  GIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHIKFGKMLDFILSKGASFMAT 132

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H       T          +            I  D    I  P     +  +R    Q
Sbjct: 133 GHY------TKLKNGLLSVGDDSNKDQVYFLSQIQKDRLNKIIFPVGDLEKSKLRELAEQ 186

Query: 184 RNI 186
             +
Sbjct: 187 LGV 189


>gi|215487849|ref|YP_002330280.1| GMP synthase [Escherichia coli O127:H6 str. E2348/69]
 gi|312965420|ref|ZP_07779652.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli 2362-75]
 gi|254800095|sp|B7UGU5|GUAA_ECO27 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|215265921|emb|CAS10330.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312289840|gb|EFR17728.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli 2362-75]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|82777892|ref|YP_404241.1| GMP synthase [Shigella dysenteriae Sd197]
 gi|309784742|ref|ZP_07679375.1| GMP synthase [glutamine-hydrolyzing] [Shigella dysenteriae 1617]
 gi|91206828|sp|Q32D55|GUAA_SHIDS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81242040|gb|ABB62750.1| GMP synthetase (glutamine-hydrolyzing) [Shigella dysenteriae Sd197]
 gi|308927112|gb|EFP72586.1| GMP synthase [glutamine-hydrolyzing] [Shigella dysenteriae 1617]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|56752503|ref|YP_173204.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC
           6301]
 gi|81300318|ref|YP_400526.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC
           7942]
 gi|81561195|sp|Q5MZ36|MNMA_SYNP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|123556790|sp|Q31N30|MNMA_SYNE7 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|56687462|dbj|BAD80684.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Synechococcus elongatus PCC 6301]
 gi|81169199|gb|ABB57539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Synechococcus elongatus PCC 7942]
          Length = 357

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 61/197 (30%), Gaps = 49/197 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
            ++V +SGG DS      LH          +   +  G+   S   VD            
Sbjct: 3   RVVVGLSGGVDSSVAAALLHRQGYAVEGLTLWLMKGKGQC-CSEGMVD------------ 49

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT-------GLMAAA---------REARYA-LISEHA 114
             + +C ++ + + VV  ++   +        G  A           R  ++  ++    
Sbjct: 50  -AAGICEQMGVPYHVVDSRDRFQEAIVDYVVQGYEAGITPLPCSQCNRAVKFGPMLDYAK 108

Query: 115 KTINATLIMTAHTFD-----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             + A  I T H        +   T  +R+     ++   L  +  ++L  +      P 
Sbjct: 109 TELKADAIATGHYARLRQNPETGRTELLRAVDRNKDQTYFLYDLPQSVLQSVKF----PL 164

Query: 170 LRCRREDIRSFLLQRNI 186
               + + R    +  +
Sbjct: 165 GELTKPETRQIAAELGL 181


>gi|24113836|ref|NP_708346.1| GMP synthase [Shigella flexneri 2a str. 301]
 gi|30063899|ref|NP_838070.1| GMP synthase [Shigella flexneri 2a str. 2457T]
 gi|44887952|sp|Q83QL1|GUAA_SHIFL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|24052926|gb|AAN44053.1| GMP synthetase (glutamine-hydrolyzing) [Shigella flexneri 2a str.
           301]
 gi|30042154|gb|AAP17880.1| GMP synthetase (glutamine-hydrolyzing) [Shigella flexneri 2a str.
           2457T]
 gi|281601909|gb|ADA74893.1| GMP synthase [Shigella flexneri 2002017]
 gi|313650993|gb|EFS15393.1| GMP synthase [glutamine-hydrolyzing] [Shigella flexneri 2a str.
           2457T]
 gi|332754194|gb|EGJ84562.1| GMP synthase [Shigella flexneri 4343-70]
 gi|332755557|gb|EGJ85921.1| GMP synthase [Shigella flexneri K-671]
 gi|332756627|gb|EGJ86978.1| GMP synthase [Shigella flexneri 2747-71]
 gi|332766340|gb|EGJ96550.1| guaA GMP synthetase [Shigella flexneri 2930-71]
 gi|333001731|gb|EGK21297.1| GMP synthase [Shigella flexneri K-218]
 gi|333016231|gb|EGK35562.1| GMP synthase [Shigella flexneri K-304]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|16130432|ref|NP_417002.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89109313|ref|AP_003093.1| GMP synthetase [Escherichia coli str. K-12 substr. W3110]
 gi|170082117|ref|YP_001731437.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|194437686|ref|ZP_03069782.1| GMP synthase [Escherichia coli 101-1]
 gi|238901672|ref|YP_002927468.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           BW2952]
 gi|253772599|ref|YP_003035430.1| GMP synthase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162481|ref|YP_003045589.1| GMP synthase [Escherichia coli B str. REL606]
 gi|256021807|ref|ZP_05435672.1| GMP synthase [Escherichia sp. 4_1_40B]
 gi|293415772|ref|ZP_06658415.1| GMP synthase [Escherichia coli B185]
 gi|300930147|ref|ZP_07145568.1| GMP synthase protein [Escherichia coli MS 187-1]
 gi|300940246|ref|ZP_07154844.1| GMP synthase protein [Escherichia coli MS 21-1]
 gi|300951788|ref|ZP_07165603.1| GMP synthase protein [Escherichia coli MS 116-1]
 gi|300958864|ref|ZP_07170971.1| GMP synthase protein [Escherichia coli MS 175-1]
 gi|301022357|ref|ZP_07186248.1| GMP synthase protein [Escherichia coli MS 196-1]
 gi|301648262|ref|ZP_07248005.1| GMP synthase protein [Escherichia coli MS 146-1]
 gi|307139142|ref|ZP_07498498.1| GMP synthase [Escherichia coli H736]
 gi|331643126|ref|ZP_08344261.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) (GMPS) [Escherichia coli H736]
 gi|331653935|ref|ZP_08354936.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) (GMPS) [Escherichia coli M718]
 gi|121769|sp|P04079|GUAA_ECOLI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; Short=GMPS; AltName: Full=Glutamine
           amidotransferase
 gi|226738445|sp|B1XAY2|GUAA_ECODH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|259647679|sp|C4ZX82|GUAA_ECOBW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|1310841|pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 gi|1310842|pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 gi|1310843|pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 gi|1310844|pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
           Pyrophosphate
 gi|146276|gb|AAB18619.1| GMP synthetase [Escherichia coli]
 gi|1788854|gb|AAC75560.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli str.
           K-12 substr. MG1655]
 gi|1805567|dbj|BAA16394.1| GMP synthetase [Escherichia coli str. K12 substr. W3110]
 gi|169889952|gb|ACB03659.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli str.
           K-12 substr. DH10B]
 gi|194423492|gb|EDX39483.1| GMP synthase [Escherichia coli 101-1]
 gi|238861384|gb|ACR63382.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           BW2952]
 gi|242378105|emb|CAQ32878.1| GMP synthetase [Escherichia coli BL21(DE3)]
 gi|253323643|gb|ACT28245.1| GMP synthase, large subunit [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974382|gb|ACT40053.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli B str. REL606]
 gi|253978549|gb|ACT44219.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli BL21(DE3)]
 gi|260448413|gb|ACX38835.1| GMP synthase, large subunit [Escherichia coli DH1]
 gi|291433420|gb|EFF06399.1| GMP synthase [Escherichia coli B185]
 gi|299881294|gb|EFI89505.1| GMP synthase protein [Escherichia coli MS 196-1]
 gi|300314492|gb|EFJ64276.1| GMP synthase protein [Escherichia coli MS 175-1]
 gi|300448985|gb|EFK12605.1| GMP synthase protein [Escherichia coli MS 116-1]
 gi|300454942|gb|EFK18435.1| GMP synthase protein [Escherichia coli MS 21-1]
 gi|300461953|gb|EFK25446.1| GMP synthase protein [Escherichia coli MS 187-1]
 gi|301073649|gb|EFK88455.1| GMP synthase protein [Escherichia coli MS 146-1]
 gi|309702839|emb|CBJ02170.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli ETEC H10407]
 gi|315137131|dbj|BAJ44290.1| GMP synthase [Escherichia coli DH1]
 gi|315615766|gb|EFU96398.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli 3431]
 gi|323936400|gb|EGB32690.1| GMP synthase domain-containing protein [Escherichia coli E1520]
 gi|323961317|gb|EGB56929.1| GMP synthase domain-containing protein [Escherichia coli H489]
 gi|323967952|gb|EGB63364.1| GMP synthase domain-containing protein [Escherichia coli M863]
 gi|323971080|gb|EGB66328.1| GMP synthase domain-containing protein [Escherichia coli TA007]
 gi|323977314|gb|EGB72400.1| GMP synthase domain-containing protein [Escherichia coli TW10509]
 gi|327252210|gb|EGE63882.1| GMP synthase [Escherichia coli STEC_7v]
 gi|331039924|gb|EGI12144.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) (GMPS) [Escherichia coli H736]
 gi|331048784|gb|EGI20860.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) (GMPS) [Escherichia coli M718]
 gi|332344378|gb|AEE57712.1| GMP synthase GuaA [Escherichia coli UMNK88]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|328854886|gb|EGG04016.1| hypothetical protein MELLADRAFT_117187 [Melampsora larici-populina
           98AG31]
          Length = 553

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 39/210 (18%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I+     +RS+V P  H++ AVSGG DS      ++  +  R      F AI VD+  
Sbjct: 225 TFIDKEIARIRSVVGPEDHVIGAVSGGVDSSVAAKLMNEAIGHR------FHAIMVDNGL 278

Query: 62  LRETAKDEVRYVSDVC-SRLRIAHSVVSWKN---------SKPQTG-----------LMA 100
           LR     E   V  +    L +  +VV   +           P+               A
Sbjct: 279 LRMN---EADQVHKMLNEDLGVNLTVVDATDTFLDALKGIEDPEAKRKIIGNTFINVFEA 335

Query: 101 AAREARYALISEHA---KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
            A E    L  +            ++    + D +E++  +      +    + G+ D  
Sbjct: 336 KAEEIDVELQKQAGSQDSQNRIKYLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLD-- 393

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             D+ L +  P     ++++R+     NI 
Sbjct: 394 --DMKLKLIEPLRELFKDEVRALGRLLNIP 421


>gi|325496463|gb|EGC94322.1| GMP synthase [Escherichia fergusonii ECD227]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|320200070|gb|EFW74659.1| GMP synthase [Escherichia coli EC4100B]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|257462948|ref|ZP_05627353.1| GMP synthase [Fusobacterium sp. D12]
 gi|317060567|ref|ZP_07925052.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. D12]
 gi|313686243|gb|EFS23078.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. D12]
          Length = 512

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 18/191 (9%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      +H  + D      + + I VD   LR+
Sbjct: 202 IESTIKVIQEKVGDKKVILGLSGGVDSSVAATLIHKAIGD------QLTCIFVDTGLLRK 255

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTI 117
                V  V      + I       +        S P+       +E       E  K  
Sbjct: 256 NEAKTVMEVYSEHFHMNIKCVNAEERFLSKLKGVSDPEQKRKIIGKEFIEVFNEEAKKFE 315

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           +A  +     + D +E+V ++      +    + G+ +    D+   +  P     ++++
Sbjct: 316 DAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPE----DMKFQLLEPLRELFKDEV 371

Query: 178 RSFLLQRNISW 188
           R    Q  I  
Sbjct: 372 REVGRQLGIPH 382


>gi|227874682|ref|ZP_03992843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844725|gb|EEJ54873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris ATCC 35243]
          Length = 394

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 53/204 (25%), Gaps = 54/204 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK------------ 67
             +++ +SGG DS      L     D     +K           E +             
Sbjct: 3   KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKL----------EESDCDGENNPTAQAL 52

Query: 68  DEVRYVSDVCSRLRIAHS-------VVSWKNSKPQTGLMAAA------------REARYA 108
            + R V+     L I          V  ++       + A A            R  ++ 
Sbjct: 53  ADARKVAAY---LGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFG 109

Query: 109 LISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
            + E A       + T H        D       R +R  + +      +       L  
Sbjct: 110 YVVERALREGFDYVATGHYARLDHIGDG-----FRLRRGASLEKDQSYVLAGARAEMLAH 164

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            I   F    + + R+   +R + 
Sbjct: 165 AIFPLFDVRDKAETRAEAQRRGLP 188


>gi|209519013|ref|ZP_03267821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. H160]
 gi|209500525|gb|EEA00573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. H160]
          Length = 416

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 53/200 (26%), Gaps = 46/200 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---S 74
               ++V +SGG DS      L     D     +K               D+  Y     
Sbjct: 2   SKRKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 75  DV------CSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
           D          + I    V++                 A R          E ++    +
Sbjct: 52  DWIDVVSVADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           HA ++ A  I T H       D + E   +++     ++   L  +    L         
Sbjct: 112 HAMSLGAETIATGHYARVRENDGRFE--LLKALDHTKDQSYFLHRLNQAQLSKT----LF 165

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     +  +R    Q  + 
Sbjct: 166 PLGEIPKTKVREIAAQIGLP 185


>gi|15832623|ref|NP_311396.1| GMP synthase [Escherichia coli O157:H7 str. Sakai]
 gi|26248868|ref|NP_754908.1| GMP synthase [Escherichia coli CFT073]
 gi|91211830|ref|YP_541816.1| GMP synthase [Escherichia coli UTI89]
 gi|110642669|ref|YP_670399.1| GMP synthase [Escherichia coli 536]
 gi|117624734|ref|YP_853647.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli APEC O1]
 gi|157161982|ref|YP_001459300.1| GMP synthase [Escherichia coli HS]
 gi|168748434|ref|ZP_02773456.1| GMP synthase [Escherichia coli O157:H7 str. EC4113]
 gi|168756279|ref|ZP_02781286.1| GMP synthase [Escherichia coli O157:H7 str. EC4401]
 gi|168761118|ref|ZP_02786125.1| GMP synthase [Escherichia coli O157:H7 str. EC4501]
 gi|168768599|ref|ZP_02793606.1| GMP synthase [Escherichia coli O157:H7 str. EC4486]
 gi|168773579|ref|ZP_02798586.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778473|ref|ZP_02803480.1| GMP synthase [Escherichia coli O157:H7 str. EC4076]
 gi|168787853|ref|ZP_02812860.1| GMP synthase [Escherichia coli O157:H7 str. EC869]
 gi|168798878|ref|ZP_02823885.1| GMP synthase [Escherichia coli O157:H7 str. EC508]
 gi|170019210|ref|YP_001724164.1| GMP synthase [Escherichia coli ATCC 8739]
 gi|170683481|ref|YP_001744692.1| GMP synthase [Escherichia coli SMS-3-5]
 gi|188496435|ref|ZP_03003705.1| GMP synthetase [Escherichia coli 53638]
 gi|191167662|ref|ZP_03029471.1| GMP synthase [Escherichia coli B7A]
 gi|191172898|ref|ZP_03034433.1| GMP synthase [Escherichia coli F11]
 gi|193064741|ref|ZP_03045819.1| GMP synthase [Escherichia coli E22]
 gi|193068319|ref|ZP_03049282.1| GMP synthase [Escherichia coli E110019]
 gi|194427336|ref|ZP_03059886.1| GMP synthase [Escherichia coli B171]
 gi|194432074|ref|ZP_03064363.1| GMP synthase [Shigella dysenteriae 1012]
 gi|195936649|ref|ZP_03082031.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808334|ref|ZP_03250671.1| GMP synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208812438|ref|ZP_03253767.1| GMP synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208819837|ref|ZP_03260157.1| GMP synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209397616|ref|YP_002271977.1| GMP synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209919984|ref|YP_002294068.1| GMP synthase [Escherichia coli SE11]
 gi|217327698|ref|ZP_03443781.1| GMP synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218555032|ref|YP_002387945.1| GMP synthase [Escherichia coli IAI1]
 gi|218559431|ref|YP_002392344.1| GMP synthase [Escherichia coli S88]
 gi|218690622|ref|YP_002398834.1| GMP synthase [Escherichia coli ED1a]
 gi|218696134|ref|YP_002403801.1| GMP synthase [Escherichia coli 55989]
 gi|218701014|ref|YP_002408643.1| GMP synthase [Escherichia coli IAI39]
 gi|227887539|ref|ZP_04005344.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli 83972]
 gi|237705014|ref|ZP_04535495.1| bifunctional GMP synthase/glutamine amidotransferase [Escherichia
           sp. 3_2_53FAA]
 gi|254794453|ref|YP_003079290.1| GMP synthase [Escherichia coli O157:H7 str. TW14359]
 gi|256017345|ref|ZP_05431210.1| GMP synthase [Shigella sp. D9]
 gi|260845137|ref|YP_003222915.1| GMP synthetase [Escherichia coli O103:H2 str. 12009]
 gi|260856601|ref|YP_003230492.1| GMP synthetase [Escherichia coli O26:H11 str. 11368]
 gi|260869196|ref|YP_003235598.1| GMP synthetase [Escherichia coli O111:H- str. 11128]
 gi|261223061|ref|ZP_05937342.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259388|ref|ZP_05951921.1| GMP synthetase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283728|ref|YP_003500546.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli O55:H7 str.
           CB9615]
 gi|293410918|ref|ZP_06654494.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293446860|ref|ZP_06663282.1| GMP synthase [Escherichia coli B088]
 gi|300817723|ref|ZP_07097938.1| GMP synthase protein [Escherichia coli MS 107-1]
 gi|300820823|ref|ZP_07100973.1| GMP synthase protein [Escherichia coli MS 119-7]
 gi|300903522|ref|ZP_07121446.1| GMP synthase protein [Escherichia coli MS 84-1]
 gi|300920661|ref|ZP_07137073.1| GMP synthase protein [Escherichia coli MS 115-1]
 gi|300981944|ref|ZP_07175812.1| GMP synthase protein [Escherichia coli MS 45-1]
 gi|300998017|ref|ZP_07181920.1| GMP synthase protein [Escherichia coli MS 200-1]
 gi|301047135|ref|ZP_07194232.1| GMP synthase protein [Escherichia coli MS 185-1]
 gi|301302864|ref|ZP_07208992.1| GMP synthase protein [Escherichia coli MS 124-1]
 gi|306814426|ref|ZP_07448588.1| GMP synthase [Escherichia coli NC101]
 gi|307312498|ref|ZP_07592131.1| GMP synthase, large subunit [Escherichia coli W]
 gi|309794446|ref|ZP_07688869.1| GMP synthase protein [Escherichia coli MS 145-7]
 gi|312973252|ref|ZP_07787424.1| GMP synthase [Escherichia coli 1827-70]
 gi|331658647|ref|ZP_08359591.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA206]
 gi|331664067|ref|ZP_08364977.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA143]
 gi|331669253|ref|ZP_08370101.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA271]
 gi|331678497|ref|ZP_08379172.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli H591]
 gi|331684152|ref|ZP_08384748.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli H299]
 gi|332278340|ref|ZP_08390753.1| glutamine-hydrolyzing amonia dependent GMP synthetase [Shigella sp.
           D9]
 gi|54037231|sp|P64295|GUAA_ECO57 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|54041332|sp|P64294|GUAA_ECOL6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122422916|sp|Q1R8M9|GUAA_ECOUT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|122958139|sp|Q0TEY1|GUAA_ECOL5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738441|sp|B7MHY8|GUAA_ECO45 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738442|sp|B5Z0X6|GUAA_ECO5E RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738443|sp|B7NQV3|GUAA_ECO7I RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738444|sp|B7M7L1|GUAA_ECO8A RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738446|sp|A8A313|GUAA_ECOHS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738447|sp|A1AE43|GUAA_ECOK1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738448|sp|B1IWF4|GUAA_ECOLC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738450|sp|B6I579|GUAA_ECOSE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226738451|sp|B1LNF9|GUAA_ECOSM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800096|sp|B7LCP7|GUAA_ECO55 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800097|sp|B7MYD5|GUAA_ECO81 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|26109274|gb|AAN81476.1|AE016764_158 GMP synthase (glutamine-hydrolyzing) [Escherichia coli CFT073]
 gi|13362839|dbj|BAB36792.1| GMP synthetase [Escherichia coli O157:H7 str. Sakai]
 gi|91073404|gb|ABE08285.1| glutamine-hydrolyzing amonia dependent GMP synthetase [Escherichia
           coli UTI89]
 gi|110344261|gb|ABG70498.1| GMP synthase [Escherichia coli 536]
 gi|115513858|gb|ABJ01933.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli APEC O1]
 gi|157067662|gb|ABV06917.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli HS]
 gi|169754138|gb|ACA76837.1| GMP synthase, large subunit [Escherichia coli ATCC 8739]
 gi|170521199|gb|ACB19377.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli SMS-3-5]
 gi|187770635|gb|EDU34479.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017013|gb|EDU55135.1| GMP synthase [Escherichia coli O157:H7 str. EC4113]
 gi|188491634|gb|EDU66737.1| GMP synthetase [Escherichia coli 53638]
 gi|189003283|gb|EDU72269.1| GMP synthase [Escherichia coli O157:H7 str. EC4076]
 gi|189356551|gb|EDU74970.1| GMP synthase [Escherichia coli O157:H7 str. EC4401]
 gi|189362273|gb|EDU80692.1| GMP synthase [Escherichia coli O157:H7 str. EC4486]
 gi|189368390|gb|EDU86806.1| GMP synthase [Escherichia coli O157:H7 str. EC4501]
 gi|189372276|gb|EDU90692.1| GMP synthase [Escherichia coli O157:H7 str. EC869]
 gi|189378613|gb|EDU97029.1| GMP synthase [Escherichia coli O157:H7 str. EC508]
 gi|190902261|gb|EDV62001.1| GMP synthase [Escherichia coli B7A]
 gi|190906762|gb|EDV66366.1| GMP synthase [Escherichia coli F11]
 gi|192927624|gb|EDV82240.1| GMP synthase [Escherichia coli E22]
 gi|192958271|gb|EDV88711.1| GMP synthase [Escherichia coli E110019]
 gi|194414657|gb|EDX30929.1| GMP synthase [Escherichia coli B171]
 gi|194419603|gb|EDX35683.1| GMP synthase [Shigella dysenteriae 1012]
 gi|208728135|gb|EDZ77736.1| GMP synthetase [Escherichia coli O157:H7 str. EC4206]
 gi|208733715|gb|EDZ82402.1| GMP synthetase [Escherichia coli O157:H7 str. EC4045]
 gi|208739960|gb|EDZ87642.1| GMP synthetase [Escherichia coli O157:H7 str. EC4042]
 gi|209159016|gb|ACI36449.1| GMP synthetase [Escherichia coli O157:H7 str. EC4115]
 gi|209763448|gb|ACI80036.1| GMP synthetase [Escherichia coli]
 gi|209763450|gb|ACI80037.1| GMP synthetase [Escherichia coli]
 gi|209763452|gb|ACI80038.1| GMP synthetase [Escherichia coli]
 gi|209763454|gb|ACI80039.1| GMP synthetase [Escherichia coli]
 gi|209763456|gb|ACI80040.1| GMP synthetase [Escherichia coli]
 gi|209913243|dbj|BAG78317.1| GMP synthase [Escherichia coli SE11]
 gi|217320065|gb|EEC28490.1| GMP synthetase [Escherichia coli O157:H7 str. TW14588]
 gi|218352866|emb|CAU98665.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           55989]
 gi|218361800|emb|CAQ99399.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli IAI1]
 gi|218366200|emb|CAR03946.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli S88]
 gi|218371000|emb|CAR18828.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           IAI39]
 gi|218428186|emb|CAR09101.2| GMP synthetase (glutamine aminotransferase) [Escherichia coli ED1a]
 gi|222034215|emb|CAP76956.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli LF82]
 gi|226901380|gb|EEH87639.1| bifunctional GMP synthase/glutamine amidotransferase [Escherichia
           sp. 3_2_53FAA]
 gi|227835889|gb|EEJ46355.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli 83972]
 gi|254593853|gb|ACT73214.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           O157:H7 str. TW14359]
 gi|257755250|dbj|BAI26752.1| GMP synthetase [Escherichia coli O26:H11 str. 11368]
 gi|257760284|dbj|BAI31781.1| GMP synthetase [Escherichia coli O103:H2 str. 12009]
 gi|257765552|dbj|BAI37047.1| GMP synthetase [Escherichia coli O111:H- str. 11128]
 gi|281179558|dbj|BAI55888.1| GMP synthase [Escherichia coli SE15]
 gi|284922454|emb|CBG35541.1| GMP synthase [glutamine-hydrolyzing] [Escherichia coli 042]
 gi|290763601|gb|ADD57562.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323690|gb|EFE63118.1| GMP synthase [Escherichia coli B088]
 gi|291471386|gb|EFF13870.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294493180|gb|ADE91936.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli IHE3034]
 gi|300300957|gb|EFJ57342.1| GMP synthase protein [Escherichia coli MS 185-1]
 gi|300304067|gb|EFJ58587.1| GMP synthase protein [Escherichia coli MS 200-1]
 gi|300404474|gb|EFJ88012.1| GMP synthase protein [Escherichia coli MS 84-1]
 gi|300408890|gb|EFJ92428.1| GMP synthase protein [Escherichia coli MS 45-1]
 gi|300412356|gb|EFJ95666.1| GMP synthase protein [Escherichia coli MS 115-1]
 gi|300526576|gb|EFK47645.1| GMP synthase protein [Escherichia coli MS 119-7]
 gi|300529711|gb|EFK50773.1| GMP synthase protein [Escherichia coli MS 107-1]
 gi|300841799|gb|EFK69559.1| GMP synthase protein [Escherichia coli MS 124-1]
 gi|305851820|gb|EFM52272.1| GMP synthase [Escherichia coli NC101]
 gi|306907421|gb|EFN37925.1| GMP synthase, large subunit [Escherichia coli W]
 gi|307554527|gb|ADN47302.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Escherichia coli ABU 83972]
 gi|307625940|gb|ADN70244.1| GMP synthase [Escherichia coli UM146]
 gi|308121902|gb|EFO59164.1| GMP synthase protein [Escherichia coli MS 145-7]
 gi|310331847|gb|EFP99082.1| GMP synthase [Escherichia coli 1827-70]
 gi|312947081|gb|ADR27908.1| GMP synthase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315061826|gb|ADT76153.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli W]
 gi|315256527|gb|EFU36495.1| GMP synthase protein [Escherichia coli MS 85-1]
 gi|315288084|gb|EFU47484.1| GMP synthase protein [Escherichia coli MS 110-3]
 gi|315292429|gb|EFU51781.1| GMP synthase protein [Escherichia coli MS 153-1]
 gi|315300464|gb|EFU59694.1| GMP synthase protein [Escherichia coli MS 16-3]
 gi|320180497|gb|EFW55428.1| GMP synthase [Shigella boydii ATCC 9905]
 gi|320188840|gb|EFW63499.1| GMP synthase [Escherichia coli O157:H7 str. EC1212]
 gi|320196341|gb|EFW70965.1| GMP synthase [Escherichia coli WV_060327]
 gi|320640851|gb|EFX10339.1| GMP synthase [Escherichia coli O157:H7 str. G5101]
 gi|320646294|gb|EFX15221.1| GMP synthase [Escherichia coli O157:H- str. 493-89]
 gi|320651799|gb|EFX20179.1| GMP synthase [Escherichia coli O157:H- str. H 2687]
 gi|320657185|gb|EFX24994.1| GMP synthase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662791|gb|EFX30123.1| GMP synthase [Escherichia coli O55:H7 str. USDA 5905]
 gi|323156160|gb|EFZ42319.1| GMP synthase [Escherichia coli EPECa14]
 gi|323170222|gb|EFZ55875.1| GMP synthase [Escherichia coli LT-68]
 gi|323177370|gb|EFZ62958.1| GMP synthase [Escherichia coli 1180]
 gi|323184432|gb|EFZ69807.1| GMP synthase [Escherichia coli 1357]
 gi|323188153|gb|EFZ73446.1| GMP synthase [Escherichia coli RN587/1]
 gi|323377593|gb|ADX49861.1| GMP synthase, large subunit [Escherichia coli KO11]
 gi|323941231|gb|EGB37416.1| GMP synthase domain-containing protein [Escherichia coli E482]
 gi|323944729|gb|EGB40796.1| GMP synthase domain-containing protein [Escherichia coli H120]
 gi|323949164|gb|EGB45055.1| GMP synthase domain-containing protein [Escherichia coli H252]
 gi|323955745|gb|EGB51503.1| GMP synthase domain-containing protein [Escherichia coli H263]
 gi|324008512|gb|EGB77731.1| GMP synthase protein [Escherichia coli MS 57-2]
 gi|324020067|gb|EGB89286.1| GMP synthase protein [Escherichia coli MS 117-3]
 gi|324118149|gb|EGC12046.1| GMP synthase domain-containing protein [Escherichia coli E1167]
 gi|326340305|gb|EGD64109.1| GMP synthase [Escherichia coli O157:H7 str. 1125]
 gi|326344989|gb|EGD68733.1| GMP synthase [Escherichia coli O157:H7 str. 1044]
 gi|331054312|gb|EGI26339.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA206]
 gi|331059866|gb|EGI31843.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA143]
 gi|331064447|gb|EGI36358.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA271]
 gi|331074957|gb|EGI46277.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli H591]
 gi|331079104|gb|EGI50306.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli H299]
 gi|332089774|gb|EGI94875.1| GMP synthase [Shigella dysenteriae 155-74]
 gi|332100692|gb|EGJ04038.1| glutamine-hydrolyzing amonia dependent GMP synthetase [Shigella sp.
           D9]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|323497329|ref|ZP_08102347.1| queuosine biosynthesis protein QueC [Vibrio sinaloensis DSM
          21326]
 gi|323317412|gb|EGA70405.1| queuosine biosynthesis protein QueC [Vibrio sinaloensis DSM
          21326]
          Length = 235

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEYD--------EVHAITFDYGQRH--KLEIEVAQSLAKEL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|296140467|ref|YP_003647710.1| sulfate adenylyltransferase, small subunit [Tsukamurella
           paurometabola DSM 20162]
 gi|296028601|gb|ADG79371.1| sulfate adenylyltransferase, small subunit [Tsukamurella
           paurometabola DSM 20162]
          Length = 308

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS  LL              + F+ + VD  H L E      + V     +  + 
Sbjct: 42  FSGGKDSTVLLHLAVKAF---WPAPLPFALLHVDTGHNLPEVLAFRDKMV----EKYNLR 94

Query: 84  HSVVSWKNSKPQTGLMAAAREAR 106
             V S ++      L   A   R
Sbjct: 95  LHVASVEDYLADGRLEERADGIR 117


>gi|164686486|ref|ZP_02210514.1| hypothetical protein CLOBAR_00051 [Clostridium bartlettii DSM
          16795]
 gi|164604497|gb|EDQ97962.1| hypothetical protein CLOBAR_00051 [Clostridium bartlettii DSM
          16795]
          Length = 224

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 20/74 (27%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          ++V  SGG DS   L  AL            K  A++ +    H L      E+    ++
Sbjct: 10 VVV-FSGGQDSTTCLFWALERFD--------KVIAVTFNYNQKHKL------EIECAKNI 54

Query: 77 CSRLRIAHSVVSWK 90
             L + H ++   
Sbjct: 55 AKELGVEHHILDMD 68


>gi|19704100|ref|NP_603662.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
          [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|81479855|sp|Q8R5X3|MNMA1_FUSNN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|19714304|gb|AAL94961.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
          [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25 RVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCDDL 72

Query: 81 RIAHSVVSWKNSKPQT 96
           I H ++  ++   + 
Sbjct: 73 GIEHYILDVRDEFKEK 88


>gi|110634697|ref|YP_674905.1| phosphoadenosine phosphosulfate reductase [Mesorhizobium sp.
          BNC1]
 gi|110285681|gb|ABG63740.1| phosphoadenosine phosphosulfate reductase [Chelativorans sp.
          BNC1]
          Length = 335

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          A+ +VA SGG DS   L  L +         +  + I  D
Sbjct: 10 ANWVVAFSGGKDSTAALKVLLAAYRHSGLQALNLTVIYCD 49


>gi|332087954|gb|EGI93079.1| GMP synthase [Shigella boydii 5216-82]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|323491405|ref|ZP_08096590.1| queuosine biosynthesis protein QueC [Vibrio brasiliensis LMG
          20546]
 gi|323314531|gb|EGA67610.1| queuosine biosynthesis protein QueC [Vibrio brasiliensis LMG
          20546]
          Length = 228

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKQYD--------EVHAITFDYGQRH--KLEIEVAQSLAKEL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|262306039|gb|ACY45612.1| gln amidotransferase [Eremocosta gigasella]
          Length = 196

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R  +    +L+ +SGG DS      LH  L D      +  A  +D+   R   KDE 
Sbjct: 36  YIRRTIGNNKVLMLISGGVDSTVCAALLHKALKDD-----QVIAFHIDNGFMR---KDES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V    S+L +   V++
Sbjct: 88  KQVEVSLSKLGLKLKVIN 105


>gi|239906368|ref|YP_002953109.1| putative tRNA uridine-sulfurtransferase [Desulfovibrio magneticus
           RS-1]
 gi|239796234|dbj|BAH75223.1| putative tRNA uridine-sulfurtransferase [Desulfovibrio magneticus
           RS-1]
          Length = 356

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 37/124 (29%), Gaps = 26/124 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVCS 78
            I VAVSGGSDS          L          +A+   H L     A      +   C 
Sbjct: 2   RIAVAVSGGSDS-------LLALGLLRAAGHDVTALH-AHFLPPGDKALALAEAIDAQCR 53

Query: 79  RLRIAHSVVSWKNS---------------KPQTGLMAAA-REARYALISEHAKTINATLI 122
            L +  + V                           AA  R+ ++ L+ + A    A  I
Sbjct: 54  ALGVPFAAVDLSQEFRARVIAPFAAAYAAGRTPNPCAACNRDMKFGLLLDAALARGAEAI 113

Query: 123 MTAH 126
            T H
Sbjct: 114 ATGH 117


>gi|260881783|ref|ZP_05405216.2| GMP synthase [Mitsuokella multacida DSM 20544]
 gi|260847878|gb|EEX67885.1| GMP synthase [Mitsuokella multacida DSM 20544]
          Length = 511

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +     L A+SGG DS    + L   +        + + + VDH  LR+   D+V 
Sbjct: 208 LKAKIGTGKALCALSGGVDSSVAAVLLSKAIGK------QLTCVFVDHGLLRKDEGDQVE 261

Query: 72  YV 73
            V
Sbjct: 262 AV 263


>gi|82544956|ref|YP_408903.1| GMP synthase [Shigella boydii Sb227]
 gi|91206827|sp|Q31XY3|GUAA_SHIBS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81246367|gb|ABB67075.1| GMP synthetase [Shigella boydii Sb227]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|74313033|ref|YP_311452.1| GMP synthase [Shigella sonnei Ss046]
 gi|91206829|sp|Q3YZ45|GUAA_SHISS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|73856510|gb|AAZ89217.1| GMP synthetase [Shigella sonnei Ss046]
 gi|323169049|gb|EFZ54726.1| GMP synthase [Shigella sonnei 53G]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|75910268|ref|YP_324564.1| tRNA-specific 2-thiouridylase MnmA [Anabaena variabilis ATCC 29413]
 gi|123608374|sp|Q3M5R7|MNMA_ANAVT RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|75703993|gb|ABA23669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anabaena variabilis ATCC 29413]
          Length = 352

 Score = 43.7 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 56/208 (26%), Gaps = 67/208 (32%)

Query: 20  AHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIK----FSAISVDHCLRETA 66
             ++V +SGG DS      LH+         +   +  G+        A  +        
Sbjct: 2   KKVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLMKGKGQCCSEGMIDAAYI-------- 53

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGL----MAAARE------- 104
                     C +L I H VV  ++                G+     +   +       
Sbjct: 54  ----------CEQLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPM 103

Query: 105 ARYALISEHAKTINATLIMTAHTFD---DQLET--VYMRSQRDYAEKGMGLSGMCDTILY 159
            +YA      + +    I T H      D+       +R+     ++   L  +   +L 
Sbjct: 104 VQYA-----REQLGCDRIATGHYARISYDEASGRYQLLRAVDRNKDQSYFLYDLSQDLLA 158

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS 187
                   P     + D R    +  + 
Sbjct: 159 AS----LFPLGEMEKADTRRIATEHGLK 182


>gi|301024735|ref|ZP_07188376.1| GMP synthase protein [Escherichia coli MS 69-1]
 gi|300396428|gb|EFJ79966.1| GMP synthase protein [Escherichia coli MS 69-1]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|262306013|gb|ACY45599.1| gln amidotransferase [Artemia salina]
          Length = 200

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +LV +SGG DS      L      R+ G  +   I +D+  LR++   EV 
Sbjct: 37  IRKAVGNMKVLVLLSGGVDSTVCAALL-----TRALGPDQLVPIHIDNGFLRKS---EVN 88

Query: 72  YVSDVCSRLRIAHSVVS 88
            V     +L ++  V+ 
Sbjct: 89  LVERSLLKLGLSVKVIR 105


>gi|259506693|ref|ZP_05749595.1| GMP synthase [Corynebacterium efficiens YS-314]
 gi|259165711|gb|EEW50265.1| GMP synthase [Corynebacterium efficiens YS-314]
          Length = 497

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 29/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             +E +R     +      +  +SGG DS     A+ + L  R+ G  + + + VDH  L
Sbjct: 181 ELVEKIR---EQVGPEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLL 231

Query: 63  RETAKDEVR--YVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHA- 114
           R   +++V   +V+   ++L     R A        ++P+    A   E   +     A 
Sbjct: 232 RAGEREQVEKDFVAATGAKLVTVDERKAFLDKLAGVTEPEAKRKAIGAEFIRSFERAVAG 291

Query: 115 ------KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
                 +      ++    + D +E+             +        +  D+   +  P
Sbjct: 292 VLEDSPEGSTVDFLVQGTLYPDVVES-----GGGAGTANIKSHHNVGGLPDDVEFELVEP 346

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R+   +  + 
Sbjct: 347 LRLLFKDEVRAVGRELGLP 365


>gi|218548059|ref|YP_002381850.1| GMP synthase [Escherichia fergusonii ATCC 35469]
 gi|226738455|sp|B7LKD4|GUAA_ESCF3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218355600|emb|CAQ88211.1| GMP synthetase (glutamine aminotransferase) [Escherichia fergusonii
           ATCC 35469]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|76801631|ref|YP_326639.1| GMP synthase subunit B [Natronomonas pharaonis DSM 2160]
 gi|121695540|sp|Q3IS14|GUAAB_NATPD RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|76557496|emb|CAI49076.1| GMP synthase (glutamine-hydrolyzing), subunit B [Natronomonas
           pharaonis DSM 2160]
          Length = 305

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 66/171 (38%), Gaps = 22/171 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLR 81
           ++A+SGG DS       +  + D      + + + VD  L R+   D++R   D    LR
Sbjct: 25  VIALSGGVDSSTAAALAYEAIGD------QLTPVYVDTGLMRKGETDQIRDTFDYMDSLR 78

Query: 82  IAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
           I  +   + ++      P+    A   +         A+ ++A  ++    + D++E   
Sbjct: 79  IIDARDRFLDALSGITDPEEKRHAIGEQFIRE-FETVARDVDADYLVQGTIYPDRIE--- 134

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
                   +    + G+ + + ++    I  P     ++++R    + ++ 
Sbjct: 135 ---SEGTIKSHHNVGGLPEVVDFEG---IVEPMRDLYKDEVREVARELDLE 179


>gi|59712391|ref|YP_205167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri ES114]
 gi|71658019|sp|Q5E3W7|MNMA_VIBF1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|59480492|gb|AAW86279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri ES114]
          Length = 374

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 53/198 (26%), Gaps = 40/198 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++                +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH-------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            ++A  I   H       T ++    +  +  R           +  T+  +       P
Sbjct: 119 VLDADFIAMGHYVRRTFPTAEEIANGIKPQMLRGLDSNKDQSYFLY-TLSSEQVARSLFP 177

Query: 169 FLRCRREDIRSFLLQRNI 186
                + ++R    ++ +
Sbjct: 178 VGELEKPEVRRIAEEQGL 195


>gi|33597091|ref|NP_884734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella parapertussis 12822]
 gi|81423061|sp|Q7U375|MNMA_BORPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33566542|emb|CAE37798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bordetella parapertussis]
          Length = 371

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 56/203 (27%), Gaps = 50/203 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     +     +K               D+  Y     
Sbjct: 7   RKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNW----------EDDDDSEYCSTRQ 56

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISE 112
                + V   + +    V++             R                E ++    +
Sbjct: 57  DLLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 116

Query: 113 HAKTINATLIMTAHTFDDQLETV---------YMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           HA  + A  I T H    ++ TV          +++  D  ++   L  +    L     
Sbjct: 117 HAMALGAEHIATGHYA--RVRTVETPAGPRHQLLKALDDTKDQSYFLHRLNQAQLART-- 172

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
               P    R+ ++R    +  +
Sbjct: 173 --LFPLGELRKTEVRRIAHEIGL 193


>gi|329850812|ref|ZP_08265657.1| GMP synthase, C-terminal domain-containing protein [Asticcacaulis
           biprosthecum C19]
 gi|328841127|gb|EGF90698.1| GMP synthase, C-terminal domain-containing protein [Asticcacaulis
           biprosthecum C19]
          Length = 514

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    ++  +SGG DS    + +H  + +      + + + VD   LR+   +  +
Sbjct: 210 IRAQVGTGKVICGLSGGVDSSVAAVLIHEAIGE------QLTCVFVDTGLLRKE--EGAQ 261

Query: 72  YVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLI 122
            V+       I    V  +            P+T      +       +E AK   A  +
Sbjct: 262 VVALFRDHYNIPLIHVEAQELFLGALAGIDDPETKRKTIGKLFIDVFDAEAAKIDGAQFL 321

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+V   S        +        +   + L +  P     ++++R+   
Sbjct: 322 AQGTLYPDVVESV---SPSGGPSAVIKSHHNVGGLPDYMELKLVEPLRELFKDEVRALGR 378

Query: 183 QRNIS 187
           +  +S
Sbjct: 379 ELGLS 383


>gi|327439220|dbj|BAK15585.1| thiamine biosynthesis ATP pyrophosphatase [Solibacillus silvestris
           StLB046]
          Length = 403

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 46/189 (24%)

Query: 23  LVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVSDVCSR 79
           L+ +SGG DS +   + +           ++  AI          T+ + ++ V ++ + 
Sbjct: 183 LLMLSGGIDSPVAGYLMMKR--------GVRLDAIHF---FSPPYTSDNALQKVKELANE 231

Query: 80  L-----RIAHSV-------VSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
           L      I   V       V+ K++ P    M + R     +  +  + + A  I+T   
Sbjct: 232 LTKFGANIRLHVIPFTELQVAVKDAVPDNMSMTSTRRMMMKVADKVREEVGALGIVTG-- 289

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN-- 185
                E+      +  ++    L+ + D      N  I RP +   + DI          
Sbjct: 290 -----ES----LGQVASQTLESLTAINDV----TNTPILRPLISADKNDIIKIAKDIGTY 336

Query: 186 ---ISWCED 191
              I   ED
Sbjct: 337 ETSIQPFED 345


>gi|319787017|ref|YP_004146492.1| GMP synthase, large subunit [Pseudoxanthomonas suwonensis 11-1]
 gi|317465529|gb|ADV27261.1| GMP synthase, large subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 522

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 65/194 (33%), Gaps = 28/194 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           + +R  VR  V    +++ +SGG DS  +   LH  + D      + + + VD   LR  
Sbjct: 213 DQIRR-VREQVGSDEVILGLSGGVDSSVVAALLHKAIGD------QLTCVFVDTGLLR-- 263

Query: 66  AKDEVRYV-SDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEH----- 113
              E   V +     L +   V+    +              A R+    L  +      
Sbjct: 264 -WQEGDQVMATFAEHLGVK--VIRVDAADRYFKALEGVSEPEAKRKIIGNLFVDIFEEES 320

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A+  NA  +     + D +E+      +      +        +   + L +  P     
Sbjct: 321 ARLKNARWLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELF 377

Query: 174 REDIRSFLLQRNIS 187
           ++++R   ++  + 
Sbjct: 378 KDEVRRLGVELGLP 391


>gi|291534007|emb|CBL07120.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Megamonas hypermegale ART12/1]
          Length = 135

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 30/129 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-----EVRYV 73
              + VA+SGG DS      L     D          I V   L + +++      V   
Sbjct: 2   KKKVAVAMSGGVDSSLTAALLIEQGYD---------VIGVTMTLSDESREAGGSTAVSDA 52

Query: 74  SDVCSRLRIAHSVVSW------KNSKPQTGLMAAAR----------EARYALISEHAKTI 117
             V   L I H VV++         K      A  R            ++  + +    +
Sbjct: 53  KKVADALNIPHYVVNYHKKFKDDVIKYFISEYAKGRTPNPCVRCNNTVKFGSLLKDCLEL 112

Query: 118 NATLIMTAH 126
            A  + T H
Sbjct: 113 GADCVATGH 121


>gi|254974826|ref|ZP_05271298.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-66c26]
 gi|255092214|ref|ZP_05321692.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile CIP 107932]
 gi|255100299|ref|ZP_05329276.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-63q42]
 gi|255306238|ref|ZP_05350410.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile ATCC 43255]
 gi|255313953|ref|ZP_05355536.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-76w55]
 gi|255516633|ref|ZP_05384309.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-97b34]
 gi|255649732|ref|ZP_05396634.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile QCD-37x79]
 gi|260682888|ref|YP_003214173.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile CD196]
 gi|260686486|ref|YP_003217619.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile R20291]
 gi|260209051|emb|CBA62172.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile CD196]
 gi|260212502|emb|CBE03431.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Clostridium difficile R20291]
          Length = 359

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 36/134 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-----------VLSDRSFGKIKFSAISVDHCLRETAKD 68
             +++ +SGG DS      L             +  D    +I+    S+      +A +
Sbjct: 3   KKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSL------SAVE 56

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-ARYALISE 112
           + R V++   ++ I   V++++    +                    A  +  ++    +
Sbjct: 57  DARRVAN---KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYK 113

Query: 113 HAKTINATLIMTAH 126
            A+ I    + T H
Sbjct: 114 KARQIGCDYVATGH 127


>gi|203288638|ref|YP_002223545.1| GMP synthase (glutamine-hydrolysing)(glutamine [Borrelia duttonii
           Ly]
 gi|201084345|gb|ACH93933.1| GMP synthase (glutamine-hydrolysing)(glutamine [Borrelia duttonii
           Ly]
          Length = 513

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 65/193 (33%), Gaps = 19/193 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE +   +R  V  + +++ +SGG DS+   + ++  + D          + VD   L
Sbjct: 200 NSIEDLVKGIRHEVGDSKVILGLSGGIDSLVCALLINKAIKD------NLICVFVDTGFL 253

Query: 63  RETAKDE-VRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHA 114
           R+   +E + +       L I H   S            P+       +           
Sbjct: 254 RKNEANEILEFNKKY--NLNIKHIDSSLLFLTNLRDVDDPEEKRKIIGKTFVEIFEKVAL 311

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +   +     + D +E+    +    + K +        +   +NL +  P     +
Sbjct: 312 EEDDIKYLAQGTIYSDVIESDVKNNV--CSSKNIKSHHNVGGLPDKINLNLLEPLRNLFK 369

Query: 175 EDIRSFLLQRNIS 187
           +++    +Q  + 
Sbjct: 370 DEVIQLGVQLGLE 382


>gi|29348763|ref|NP_812266.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|81443497|sp|Q8A2F1|MNMA2_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|29340669|gb|AAO78460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 370

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 34/187 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS    + L     + +    +F  +         + + +     +  R
Sbjct: 6   KRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYEL-------NDSTEYLEDARHLAER 58

Query: 80  LRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLIM 123
           L I H     +    +  +     E                 ++ L+S+ A  +    I 
Sbjct: 59  LGIRHITYDAREIFRKQIIEYFVHEYMVGHTPVPCTLCNNYLKWPLLSKIADEMGIFYIA 118

Query: 124 TAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           T H       DD        +     ++   L G+   IL  +      P     + + R
Sbjct: 119 TGHYVRKVKVDDTC--YITYAADSDKDQTFFLWGLKQDILRRM----LLPMGDITKVEAR 172

Query: 179 SFLLQRN 185
           +F  +R 
Sbjct: 173 AFAAERG 179


>gi|150388319|ref|YP_001318368.1| ExsB family protein [Alkaliphilus metalliredigens QYMF]
 gi|149948181|gb|ABR46709.1| ExsB family protein [Alkaliphilus metalliredigens QYMF]
          Length = 270

 Score = 43.7 bits (102), Expect = 0.058,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 59/200 (29%), Gaps = 47/200 (23%)

Query: 1   MFL-SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M L    E ++ ++++L     + V+ SGG DS  LL   + VL D         A++  
Sbjct: 1   MLLQEKYEFLQNYIKNL---GSLAVSYSGGVDSTFLLKVAYDVLGD------NVIAVT-- 49

Query: 60  HCLRETAK----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY---ALI-- 110
                T+      E          +   H ++  +                Y    L   
Sbjct: 50  ----ATSSTYPQREFEEAKRWIKDIGAKHIIIESEELDIDGFSENPINRCYYCKSELFTK 105

Query: 111 -SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E A   N   +      DD                G    GM         L +  P 
Sbjct: 106 VREVAVENNIEYVADGSNQDDL---------------GDFRPGMQAASE----LKVVSPL 146

Query: 170 --LRCRREDIRSFLLQRNIS 187
              +  +++IR+   Q ++ 
Sbjct: 147 REAKMTKDEIRAISKQLDLP 166


>gi|324112998|gb|EGC06974.1| GMP synthase domain-containing protein [Escherichia fergusonii
           B253]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|307594719|ref|YP_003901036.1| exsB protein [Vulcanisaeta distributa DSM 14429]
 gi|307549920|gb|ADN49985.1| exsB protein [Vulcanisaeta distributa DSM 14429]
          Length = 496

 Score = 43.7 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 37/129 (28%), Gaps = 35/129 (27%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +++A SGG DS       L              + +  ++  R     E R +  +   L
Sbjct: 256 LVIA-SGGLDSTTAATYLLKQ--------GYDVALLHFNYGHRAE-TQEDRAIRRIAEFL 305

Query: 81  RIA--------HSVVSW----------KNSKPQTGLMAA-----AREARYALISE-HAKT 116
            +           VV            +  + + G   A     AR   +  ++   A+ 
Sbjct: 306 GVPLLEVSMDFFKVVRHSPLLGDGEINRVDEGREGAEFAHEWVPARNFVFIALATAIAEA 365

Query: 117 INATLIMTA 125
                I T 
Sbjct: 366 YGYDYIATG 374


>gi|194335950|ref|YP_002017744.1| exsB protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308427|gb|ACF43127.1| exsB protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 258

 Score = 43.7 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           FV +    A +L+  SGG DS+      H+          + +A+ V++  R   + E+
Sbjct: 3  RFVSTTQPKAVVLL--SGGMDSLVTTAMAHA-------AGFELAAMHVNYGQRTW-QKEL 52

Query: 71 RYVSDVCSRLRIA 83
               +CS   I 
Sbjct: 53 ESFRSICSHYNIE 65


>gi|190347632|gb|EDK39943.2| GMP synthase [Meyerozyma guilliermondii ATCC 6260]
          Length = 529

 Score = 43.7 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 28/201 (13%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I++    ++ LV P A ++ AVSGG DS      +   + DR      F AI VD+  
Sbjct: 211 NFIDTEIARIQKLVGPTAEVIGAVSGGVDSTVGAKIMKEAIGDR------FHAIYVDNGV 264

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE---HAKTIN 118
           +R+   +EV     +   L I  +VV   +            E +  +I     H     
Sbjct: 265 MRKNETEEVY--KTLTEGLGINLTVVDASDLFLGRLKGITDPEKKRKIIGNTFIHVFEEE 322

Query: 119 ATLIMTAHTFD-----------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           A  I  AH  +           D +E++  +      +    + G+ D     + L +  
Sbjct: 323 AAKIKPAHGQEIEYLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLDV----MKLKLIE 378

Query: 168 PFLRCRREDIRSFLLQRNISW 188
           P     ++++R       +  
Sbjct: 379 PLRELFKDEVRHLGELLGVPH 399


>gi|146414684|ref|XP_001483312.1| GMP synthase [Meyerozyma guilliermondii ATCC 6260]
          Length = 529

 Score = 43.7 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 28/201 (13%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I++    ++ LV P A ++ AVSGG DS      +   + DR      F AI VD+  
Sbjct: 211 NFIDTEIARIQKLVGPTAEVIGAVSGGVDSTVGAKIMKEAIGDR------FHAIYVDNGV 264

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISE---HAKTIN 118
           +R+   +EV     +   L I  +VV   +            E +  +I     H     
Sbjct: 265 MRKNETEEVY--KTLTEGLGINLTVVDASDLFLGRLKGITDPEKKRKIIGNTFIHVFEEE 322

Query: 119 ATLIMTAHTFD-----------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           A  I  AH  +           D +E++  +      +    + G+ D     + L +  
Sbjct: 323 AAKIKPAHGQEIEYLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLDV----MKLKLIE 378

Query: 168 PFLRCRREDIRSFLLQRNISW 188
           P     ++++R       +  
Sbjct: 379 PLRELFKDEVRHLGELLGVPH 399


>gi|269977689|ref|ZP_06184653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris 28-1]
 gi|269934117|gb|EEZ90687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mobiluncus mulieris 28-1]
          Length = 394

 Score = 43.7 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 53/204 (25%), Gaps = 54/204 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK------------ 67
             +++ +SGG DS      L     D     +K           E +             
Sbjct: 3   KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKL----------EESDCDGEDNPTAQAL 52

Query: 68  DEVRYVSDVCSRLRIAHS-------VVSWKNSKPQTGLMAAA------------REARYA 108
            + R V+     L I          V  ++       + A A            R  ++ 
Sbjct: 53  ADARKVAAY---LGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFG 109

Query: 109 LISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
            + E A       + T H        D       R +R  + +      +       L  
Sbjct: 110 YVVERALREGFDYVATGHYACLDHIGDG-----FRLRRGASLEKDQSYVLAGARAEMLAH 164

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            I   F    + + RS   +R + 
Sbjct: 165 AIFPLFDVRDKAETRSEAQRRGLP 188


>gi|220905738|ref|YP_002481049.1| GMP synthase [Cyanothece sp. PCC 7425]
 gi|219862349|gb|ACL42688.1| GMP synthase, large subunit [Cyanothece sp. PCC 7425]
          Length = 537

 Score = 43.7 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           E++R  +R+ V    +L+A+SGG DS  L   L+  +
Sbjct: 222 EAIRE-IRAKVGDKRVLLALSGGVDSSTLAFLLYRAI 257


>gi|330503284|ref|YP_004380153.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01]
 gi|328917570|gb|AEB58401.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01]
          Length = 362

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 35/129 (27%)

Query: 23  LVAVSGGSDS--MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
           +V +SGG DS    LL+       +  F K             E        A D++   
Sbjct: 2   IVGMSGGVDSSVSALLLMEQGYQVEGLFMK----------NWDEDDGTEYCTAMDDLADA 51

Query: 74  SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTI 117
             VC R+ I     +     W N          A           RE ++    ++A ++
Sbjct: 52  QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSL 111

Query: 118 NATLIMTAH 126
            A LI T H
Sbjct: 112 GADLIATGH 120


>gi|297192617|ref|ZP_06910015.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151442|gb|EFH31171.1| bifunctional GMP synthase/glutamine amidotransferase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 558

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 9/125 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R+ V     +  +SGG DS     A+ + L  ++ G  + + + VDH L 
Sbjct: 212 NVIEEQVEAIRAQVGTKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHGLM 265

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           R+   ++V   +V+    +L++  +   + ++          R+          +   A 
Sbjct: 266 RKGETEQVEKDFVAATGVQLKVVDAADRFLDALAGVSDPEEKRKIIGREFIRVFEQAQAE 325

Query: 121 LIMTA 125
           ++  A
Sbjct: 326 IVAEA 330


>gi|297616780|ref|YP_003701939.1| GMP synthase, large subunit [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144617|gb|ADI01374.1| GMP synthase, large subunit [Syntrophothermus lipocalidus DSM
           12680]
          Length = 510

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 28/195 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             +E V+  V        +L A+SGG DS     AL  +   +       + + VDH  L
Sbjct: 204 ETVEEVKRRVGQ----KKVLCALSGGVDSSV-AAALVDLAVGK-----NLTCVFVDHGLL 253

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEH 113
           R+   ++V  V        +    V             + P+        E       E 
Sbjct: 254 RKGEAEQV--VRTFREERGMNLIYVDAAQRFLDKLQGVADPELKRKIIGHEFIRVFEEEA 311

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K      ++    + D +E              +        +  D+   +  P     
Sbjct: 312 RKLGQIDFLVQGTLYPDVIE------SGTATAATIKTHHNVGGLPEDMQFELIEPLRLLF 365

Query: 174 REDIRSFLLQRNISW 188
           ++++R    Q  +  
Sbjct: 366 KDEVRRIGEQLGLPP 380


>gi|160883986|ref|ZP_02064989.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483]
 gi|156110716|gb|EDO12461.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483]
          Length = 378

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 89/276 (32%), Gaps = 50/276 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS     A+  + +      + F    ++      + + +    ++  R
Sbjct: 6   KRVLLGMSGGTDSSV--AAMRLLEAGYEVIGVTFRFYELN-----GSTEYLEDARNLAER 58

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIM 123
           L I H     +    +  +        A R            ++ L+++ A  +    I 
Sbjct: 59  LGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGVFYIA 118

Query: 124 TAH-TFDDQL-ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T H   + QL  T Y+    D  +     L G+   IL  +      P     + + R +
Sbjct: 119 TGHYAQNIQLNNTFYITYAADSDKDQTFFLWGLKQDILCRM----LLPMGDITKVEARVW 174

Query: 181 LLQRN----------ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             +            I  C  P      + R  ++ ++   +  AL  + +   + +  V
Sbjct: 175 AAEHGFQKVATKKDSIGVCFCP----MDY-RTFLKNWLAQNN-EALAEEEQMMGENQALV 228

Query: 231 NNAVAMLIPKYLTVHMRSIIAISQDILNIDSTLLFY 266
            +  A L      V     +    D +       FY
Sbjct: 229 GSNQAGLNK----VKRGRFVDEKGDFIAWHEGYPFY 260


>gi|56460022|ref|YP_155303.1| PP-loop superfamily ATPase [Idiomarina loihiensis L2TR]
 gi|81362360|sp|Q5QUZ6|QUEC_IDILO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|56179032|gb|AAV81754.1| Predicted PP-loop superfamily ATPase [Idiomarina loihiensis L2TR]
          Length = 218

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 21/77 (27%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV---- 76
           ++V  SGG DS      LH  L++ +    +  A+S ++  R        +V ++    
Sbjct: 4  KVVVIYSGGMDS---FTVLHRALAEGN----EVLALSFNYGQR--------HVKELEVAG 48

Query: 77 --CSRLRIAHSVVSWKN 91
            C +  I H VV    
Sbjct: 49 NVCKQHGIPHKVVDITA 65


>gi|120554680|ref|YP_959031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter aquaeolei VT8]
 gi|205816919|sp|A1U1H5|MNMA_MARAV RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120324529|gb|ABM18844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter aquaeolei VT8]
          Length = 392

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 52/204 (25%), Gaps = 49/204 (24%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV- 73
                  ++V +SGG DS      L           +K               D   Y  
Sbjct: 8   QSPAHTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNW----------DEDDGTEYCT 57

Query: 74  --------SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYAL 109
                     V   + I     S+                +A R          E ++  
Sbjct: 58  AMTDLADAQAVADAIGIKLHTASFAAEYWDRVFEHFLSEYSAGRTPNPDILCNKEVKFRA 117

Query: 110 ISEHAKTINATLIMTAHT-----FDD---QLETVYMRSQRDYAEKGMGLSGMCDTILYDL 161
             ++A T+ A  I T H       +D   + +   ++      ++   L  +    +   
Sbjct: 118 FLDYAVTLGADYIATGHYTRQRPLNDGSGKAQ--LLKGLDPNKDQSYFLHAVSGERIART 175

Query: 162 NLWISRPFLRCRREDIRSFLLQRN 185
                 P     + ++R    ++ 
Sbjct: 176 ----LFPVGELEKPEVRRIAEEQG 195


>gi|323700722|ref|ZP_08112634.1| GMP synthase, large subunit [Desulfovibrio sp. ND132]
 gi|323460654|gb|EGB16519.1| GMP synthase, large subunit [Desulfovibrio desulfuricans ND132]
          Length = 514

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 72/194 (37%), Gaps = 22/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +++    ++  V  A +++ +SGG DS    + LH  +            I VD+  L
Sbjct: 202 SFVDTTIESLKEQVGDAKVVLGLSGGIDSTVAAVMLHKAIGK------NLHCIFVDNGLL 255

Query: 63  RETAKDEVR-YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHA 114
           R   ++EV  ++++    L +     S +      G+     + R         +    A
Sbjct: 256 RMGEREEVIGFLAEH-FDLNVKMVDASSEFLDNLKGVEDP-EKKRKIIGHKFIEVFDREA 313

Query: 115 KTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           K I     +   T   D +E+   +      +    + G+ +T    +NL +  P     
Sbjct: 314 KAIKGVEFLGQGTLYPDVIESESFKGPSAVIKSHHNVGGLPET----MNLKLVEPLRELF 369

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 370 KDEVRRAAYELGLP 383


>gi|323488451|ref|ZP_08093698.1| aluminum resistance protein [Planococcus donghaensis MPA1U2]
 gi|323397958|gb|EGA90757.1| aluminum resistance protein [Planococcus donghaensis MPA1U2]
          Length = 221

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+ +          + + ++ D+  R +A  E+     +   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAIKNFK--------EVATVTFDYGQRHSA--EIECARKIADEL 55

Query: 81 RIAHSVVS 88
           +   V+ 
Sbjct: 56 GVLFKVLD 63


>gi|289705657|ref|ZP_06502042.1| sulfate adenylyltransferase, small subunit [Micrococcus luteus
           SK58]
 gi|289557605|gb|EFD50911.1| sulfate adenylyltransferase, small subunit [Micrococcus luteus
           SK58]
          Length = 311

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V     PA +    SGG DS+ +L            G+I F  + VD  H 
Sbjct: 26  EAIHIIREVVAEFERPAML---FSGGKDSVVMLHLAAKAF---WPGRIPFPVVHVDTGHN 79

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
                 + + +      RL +   V S +    +  L   A
Sbjct: 80  F----PEVLEFRDRTVERLGLRLVVGSVQEYIDRGELRERA 116


>gi|238578303|ref|XP_002388673.1| hypothetical protein MPER_12279 [Moniliophthora perniciosa FA553]
 gi|215450165|gb|EEB89603.1| hypothetical protein MPER_12279 [Moniliophthora perniciosa FA553]
          Length = 409

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 11/76 (14%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDV 76
               ++ AVSGG DS      +H  + DR      F AI VD+  LR     E + V ++
Sbjct: 226 PKGRVIGAVSGGVDSTVAAKLMHEAIGDR------FHAIMVDNGVLRLN---EAQRVYEM 276

Query: 77  CSR-LRIAHSVVSWKN 91
            ++ L +  +VV   +
Sbjct: 277 LNKDLGVNLTVVDASD 292


>gi|198275614|ref|ZP_03208145.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135]
 gi|198271243|gb|EDY95513.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135]
          Length = 368

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 18/120 (15%)

Query: 24  VA--VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           VA  +SGG DS  ++  L           IK    + D  L  TA++++   S    +  
Sbjct: 15  VAALISGGVDSAVVVHLLCEQGHKPDLFYIKIGMDTDD-GLTCTAEEDIELASATARKYG 73

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKT--INATLIMTAH 126
           ++  +V  + +     +       R  L                  +        I T H
Sbjct: 74  LSFHIVDLQQAYWDNVVAYTVDRVRRGLTPNPDVMCNKLIKFGCFDREAGQGYDKIATGH 133


>gi|87122357|ref|ZP_01078238.1| putative regulator protein [Marinomonas sp. MED121]
 gi|86162332|gb|EAQ63616.1| putative regulator protein [Marinomonas sp. MED121]
          Length = 221

 Score = 43.7 bits (102), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS      LH  LS+      +  AIS ++   +    E+   + VC  L 
Sbjct: 6  VVV-YSGGMDS---YTVLHKALSEND----EIYAISFNYG--QKHNKELIIAAQVCQELN 55

Query: 82 IAHSVVSWKN 91
          I H VV    
Sbjct: 56 IPHKVVDITA 65


>gi|326799645|ref|YP_004317464.1| GMP synthase (glutamine-hydrolyzing) [Sphingobacterium sp. 21]
 gi|326550409|gb|ADZ78794.1| GMP synthase (glutamine-hydrolyzing) [Sphingobacterium sp. 21]
          Length = 516

 Score = 43.7 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE+    ++  +   H+++A+SGG DS    + LH  +            I VD+ L
Sbjct: 198 TFIETTIAELKDKLQNDHVILALSGGVDSSVAAVLLHQAIGK------NLHCIFVDNGL 250


>gi|197336343|ref|YP_002156606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri MJ11]
 gi|229487426|sp|B5FG83|MNMA_VIBFM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|197317833|gb|ACH67280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio fischeri MJ11]
          Length = 374

 Score = 43.7 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 53/198 (26%), Gaps = 40/198 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMK--------NWEEDDNEEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++                +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH-------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            ++A  I   H       T ++    V  +  R           +  T+  +       P
Sbjct: 119 VLDADFIAMGHYVRRTFPTAEEIANGVKPQMLRGLDSNKDQSYFLY-TLSSEQVARSLFP 177

Query: 169 FLRCRREDIRSFLLQRNI 186
                + ++R    ++ +
Sbjct: 178 VGELEKPEVRRIAEEQGL 195


>gi|118580426|ref|YP_901676.1| GMP synthase [Pelobacter propionicus DSM 2379]
 gi|226739654|sp|A1AQJ8|GUAA_PELPD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118503136|gb|ABK99618.1| GMP synthase (glutamine-hydrolyzing) [Pelobacter propionicus DSM
           2379]
          Length = 520

 Score = 43.7 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 25/195 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     ++  V    +++ +SGG DS      +H  + D      + + + VD+  LR 
Sbjct: 209 IEDAVTRIQEQVGSERVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRL 262

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA------REARYALISEHAKT-- 116
              D+V         L +   V+     +     +A        R+   +L  E      
Sbjct: 263 EEGDQVM--RTFAENLGVK--VIRVNAEERFLSALAGESDPEKKRKIIGSLFVEIFDEES 318

Query: 117 ---INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
               +A  +     + D +E+      +      +        +   + L +  P     
Sbjct: 319 NRIEDARWLAQGTIYPDVIES---AGAKTGKAHNIKSHHNVGGLPEYMKLKLLEPLRELF 375

Query: 174 REDIRSFLLQRNISW 188
           ++++R+   +  +  
Sbjct: 376 KDEVRAIGEELGLPH 390


>gi|315146247|gb|EFT90263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Enterococcus faecalis TX4244]
          Length = 374

 Score = 43.7 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 28/144 (19%)

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YAL 109
           A ++ + V+ V  ++ I +  V+++             E R                +  
Sbjct: 52  ATEDYKDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKA 111

Query: 110 ISEHAKTINATLIMTAHTFDDQLET------VYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
             ++A  + A  + T H    Q+ET        +R   +  ++   LS +    L     
Sbjct: 112 FLDYAMQLGADYVATGHYA--QVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMF 169

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
               P     + ++R+   +  ++
Sbjct: 170 ----PLGGMEKSEVRAIADRAGLA 189


>gi|283477583|emb|CAY73499.1| GMP synthase [Erwinia pyrifoliae DSM 12163]
          Length = 534

 Score = 43.7 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE     +R  V    +++ +SGG DS    + LH  + DR       + + VD+ L 
Sbjct: 221 KIIEDAVARLREQVGDDKVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 274

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +       +    V+ +N          +P+       R        +
Sbjct: 275 RLN---EAEQVMEMFGDHFGLNIIHVAAENRFLDALAGTDEPEAKRKIIGRVFVEVFDEK 331

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 332 ATKLSDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 388

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  +  
Sbjct: 389 FKDEVRKIGLELGLPH 404


>gi|157144560|ref|YP_001451879.1| GMP synthase [Citrobacter koseri ATCC BAA-895]
 gi|226738420|sp|A8AD80|GUAA_CITK8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157081765|gb|ABV11443.1| hypothetical protein CKO_00280 [Citrobacter koseri ATCC BAA-895]
          Length = 525

 Score = 43.7 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E  
Sbjct: 221 IREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAE 271

Query: 72  YVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTINATL 121
            V D+           +          K +    A      R        E  +  +   
Sbjct: 272 QVMDMFGDHFGLNIVHVPAEERFLTALKGENDPEAKRKIIGRVFVEVFDEEAFRLEDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|20092990|ref|NP_619065.1| succinoglycan biosynthesis regulator [Methanosarcina acetivorans
          C2A]
 gi|74527841|sp|Q8TIF3|QUEC_METAC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|19918307|gb|AAM07545.1| succinoglycan biosynthesis regulator [Methanosarcina acetivorans
          C2A]
          Length = 231

 Score = 43.7 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +S G DS+  L      L       I+  AI+ D+  R   + E+ Y   VC    I H 
Sbjct: 7  LSSGLDSVAALAIAAESLE------IEM-AITFDYGQRAG-QREIEYSRKVCEHYGIEHI 58

Query: 86 VVSWK 90
          V+   
Sbjct: 59 VIKLD 63


>gi|84624072|ref|YP_451444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|123521874|sp|Q2P2Q7|MNMA_XANOM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84368012|dbj|BAE69170.1| Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 378

 Score = 43.7 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 39/133 (29%), Gaps = 40/133 (30%)

Query: 21  HILVAVSGGSDSMGLLIALHSV-----------LSDRSFGKIKFSAISVDHCLRETAKDE 69
           HI+V VSGG DS      L               +D   G  +             A+D+
Sbjct: 5   HIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNWADDGSGDCR-------------AEDD 51

Query: 70  VRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEH 113
            R    VC  L +           W           AA           RE ++    + 
Sbjct: 52  RRDAVAVCGVLGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDA 111

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 112 AQALGAERIATGH 124


>gi|145352290|ref|XP_001420484.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580718|gb|ABO98777.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 394

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 55/204 (26%), Gaps = 44/204 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--------- 67
             P  + V +SGG DS   L  L +   +     ++          +E  +         
Sbjct: 4   AKPLRVAVLLSGGVDSSVALALLRAAGHECVAFYLQIW-------FQEDFRNTWDQCPWE 56

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAREAR-------------YALI 110
           +++R    VC R+ +    V   +       +  +    R+ R             +   
Sbjct: 57  EDLRVAESVCERVGVPLETVPLTDEYWNLVVKDSVEEI-RKGRTPNPDVLCNSRVKFGAF 115

Query: 111 SEHAKTIN---ATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
            E     +      + + H       D  E    R              + D +  +   
Sbjct: 116 REWLARTHPGEFDRVASGHYAAVERADVGE--LARLVMSGDTFKDQTYFLAD-LSQEQLG 172

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     + +IR+      + 
Sbjct: 173 SVCFPVGGMPKAEIRALAASAELP 196


>gi|53802427|ref|YP_112824.1| GMP synthase [Methylococcus capsulatus str. Bath]
 gi|81683037|sp|Q60C21|GUAA_METCA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|53756188|gb|AAU90479.1| GMP synthase [Methylococcus capsulatus str. Bath]
          Length = 524

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 65/188 (34%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +    +++ +SGG DS  +   L   + +      + + + VD   LR    D+V 
Sbjct: 220 VRNRIGAERVVLGLSGGVDSSVVAALLQHAIGE------QLTCVFVDTGLLRLNEGDQVM 273

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAA-----REARYALI-----SEHAKTINAT 120
             +     + +   V+     +     L   A     R+    L       E AK  +A 
Sbjct: 274 --ATFAEHMGV--RVIRVNAEERFLQALQGIADPEDKRKIIGRLFVEIFDEEAAKIEDAR 329

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +   + L +  P     ++++R  
Sbjct: 330 WLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPETMKLQLVEPLRELFKDEVRQI 386

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 387 GLELGLPY 394


>gi|84387649|ref|ZP_00990666.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio splendidus 12B01]
 gi|84377494|gb|EAP94360.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio splendidus 12B01]
          Length = 517

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + +  H  + D      K + + VD+  L
Sbjct: 204 SIIEDAVARIKEQVGDDEVILGLSGGVDSSVVAMLAHRAIGD------KLTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V D    +  +    V  +          A  EA+  +I           
Sbjct: 258 RLN---EGEQVMDMFGDKFGLNIIKVDAEERFLNALEGEAEPEAKRKIIGHVFVDIFDEE 314

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLKNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|332525693|ref|ZP_08401842.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2]
 gi|332109252|gb|EGJ10175.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2]
          Length = 363

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 53/202 (26%), Gaps = 46/202 (22%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L     +     +K               D+  Y   
Sbjct: 1   MQGKRRVVVGLSGGVDSAVSAWLLKQQGYEVVGLFMKNW----------EDDDDSEYCSS 50

Query: 74  -------SDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALI 110
                  + V   + I    V++             R                E ++   
Sbjct: 51  RQDFLDAAAVADVIGIDLEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAF 110

Query: 111 SEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            +HA  + A  I T H       D + E   ++      ++   L  +    L       
Sbjct: 111 LDHAMRLGAERIATGHYARVRERDGRFE--LLKGLDPAKDQSYFLHRLNQAQLARTMF-- 166

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     + ++R    +  + 
Sbjct: 167 --PVGELPKTEVRRIAAEIGLP 186


>gi|294102771|ref|YP_003554629.1| Queuosine synthesis-like protein [Aminobacterium colombiense DSM
           12261]
 gi|293617751|gb|ADE57905.1| Queuosine synthesis-like protein [Aminobacterium colombiense DSM
           12261]
          Length = 282

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 36/188 (19%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEV 70
           ++ L      +V+ SGG DS  ++  + S+++          A       R      +E+
Sbjct: 15  IKKLKQSRRCVVSFSGGIDSAVVVAIMASLMA-----PEDVHAA----MFRSFLHFPEEM 65

Query: 71  RYVSDVCSRLRIAHSVV---SWKNSKPQTGLMAAAR---EARYALISEHAKTINATLIMT 124
                 C  L +    +        +         R   +AR   + E AK I A L++ 
Sbjct: 66  ERGGLFCHSLGVTLHPLPGPELDVDEVMNNSSERCRFCKKARGRELLEFAKGIEADLVLE 125

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLL 182
               DD        + R      +G   + +         I  P       ++ +R+   
Sbjct: 126 GSNADD-----LKDATR------LGTKVLKEMP------QIYSPLAEGGLSKDKVRTLAK 168

Query: 183 QRNISWCE 190
           + +ISW +
Sbjct: 169 ELDISWWD 176


>gi|114046812|ref|YP_737362.1| GMP synthase [Shewanella sp. MR-7]
 gi|123030774|sp|Q0HX50|GUAA_SHESR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|113888254|gb|ABI42305.1| GMP synthase (glutamine-hydrolyzing) [Shewanella sp. MR-7]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + + LH  +        K + + VD+  L
Sbjct: 212 SIIEDAIERLKKQVGDDEVILGLSGGVDSSVVAMLLHRAIGK------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SE 112
           R     E + V +       +    +  +N         A  EA+  +I          E
Sbjct: 266 RLN---EAKQVMEMFGDHFGLNIVHIDAENRFLDALKGEADPEAKRKIIGRVFVEIFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K +NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 AKKCVNAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|301102819|ref|XP_002900496.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262101759|gb|EEY59811.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 305

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 42/193 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           + S + P + +VA SGG DS      +  V  D     I  SA      L   +  ++R 
Sbjct: 23  LSSKLLPINNVVAFSGGVDSSLAAALVFQVFPDTGAACIGRSAA-----L---SSVQLRQ 74

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------------ALISEHAKTINA 119
             +V S + +         +K +  +    +   Y                 +  +    
Sbjct: 75  AREVASHIGVPLWECHTDEAKLEGYVANQGKSCYYCKTTLYSTLNQVAEFAWQEMQQHGE 134

Query: 120 T---LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               ++      DDQ     +   R      +GL    +         +  P     +++
Sbjct: 135 EIKPVLYNGTNADDQ-----LDLTR------VGLVAATE-------FEVVSPLSGLTKQE 176

Query: 177 IRSFLLQRNISWC 189
           +R       +   
Sbjct: 177 VRDVAKYLGLPNW 189


>gi|253568894|ref|ZP_04846304.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 1_1_6]
 gi|251840913|gb|EES68994.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 1_1_6]
          Length = 369

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 59/187 (31%), Gaps = 34/187 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS    + L     + +    +F  +         + + +     +  R
Sbjct: 5   KRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYEL-------NDSTEYLEDARHLAER 57

Query: 80  LRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTINATLIM 123
           L I H     +    +  +     E                 ++ L+S+ A  +    I 
Sbjct: 58  LGIRHITYDAREIFRKQIIEYFVHEYMVGHTPVPCTLCNNYLKWPLLSKIADEMGIFYIA 117

Query: 124 TAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
           T H       DD        +     ++   L G+   IL  +      P     + + R
Sbjct: 118 TGHYVRKVKVDDTC--YITYAADSDKDQTFFLWGLKQDILRRM----LLPMGDITKVEAR 171

Query: 179 SFLLQRN 185
           +F  +R 
Sbjct: 172 AFAAERG 178


>gi|298528464|ref|ZP_07015868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512116|gb|EFI36018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 344

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 40/199 (20%)

Query: 21  HILVAVSGGSDSMGLLIAL----HSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
            I VAVSGG DS+  L+ L    H VL+  +    +      D  L        + +  +
Sbjct: 2   RIAVAVSGGLDSLASLVMLREEGHDVLALHARFFPRL-----DEHL-------EKRLKGI 49

Query: 77  CSRLRIAHSVVSWKNS--------------KPQTGLMAAAREAR--YALISEHAKTINAT 120
           C+ L +   V   ++                  T    A    R  + L+ + A  + A+
Sbjct: 50  CTSLGVEMHVTLLQDEFAARVIDPFVQDYLDGLTPNPCARCNMRIKFGLLLDRALELGAS 109

Query: 121 LIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            + T H      +    V MR+     ++   L  +    L         P     +  +
Sbjct: 110 ALATGHYAGIKKNSSGPVLMRALDQAKDQSYFLCLVPPRRLARAKF----PMYHHFKSSM 165

Query: 178 RSFLLQRNIS-WCEDPSNT 195
           + FL  RNI+    + SN 
Sbjct: 166 QEFLQNRNITVPAREESNE 184


>gi|329121915|ref|ZP_08250529.1| GMP synthase [Dialister micraerophilus DSM 19965]
 gi|327467712|gb|EGF13208.1| GMP synthase [Dialister micraerophilus DSM 19965]
          Length = 512

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    ++ A+SGG DS    + +H  + +      + + + VDH  
Sbjct: 210 IREKVGKNKVICALSGGVDSSVAAVLVHRAIGE------QLTCVFVDHGF 253


>gi|313892419|ref|ZP_07826010.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Dialister microaerophilus UPII 345-E]
 gi|313119180|gb|EFR42381.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein
           [Dialister microaerophilus UPII 345-E]
          Length = 512

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    ++ A+SGG DS    + +H  + +      + + + VDH  
Sbjct: 210 IREKVGKNKVICALSGGVDSSVAAVLVHRAIGE------QLTCVFVDHGF 253


>gi|262040239|ref|ZP_06013490.1| GMP synthase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259042348|gb|EEW43368.1| GMP synthase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 221 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V +       +    V  +          +  EA+  +I          E  K  +   
Sbjct: 272 QVMEMFGDHFGLNIVHVEGEQRFLDALAGESDPEAKRKIIGRVFVEVFDEEALKLDDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|224026934|ref|ZP_03645300.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
           18228]
 gi|224020170|gb|EEF78168.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM
           18228]
          Length = 385

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 23  LVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           L A+ SGG DS   +  L           I+    + D  L  TA++++   +    +  
Sbjct: 32  LAALISGGVDSAVAVHLLCEQGYKPDLFYIRIGMDTDD-GLSCTAEEDIELATATARKYG 90

Query: 82  IAHSVVSWKNS 92
           +   VV  +  
Sbjct: 91  LKLEVVDLQQE 101


>gi|221053929|ref|XP_002261712.1| tRNA methyl transferase [Plasmodium knowlesi strain H]
 gi|193808172|emb|CAQ38875.1| tRNA methyl transferase, putative [Plasmodium knowlesi strain H]
          Length = 906

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 14/74 (18%)

Query: 9   VRFFVRSLVYPAHILVA--VSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
            R  +R   YP    VA  +SGG DS M L      +L  + F    F  +   H  +E 
Sbjct: 320 ARKNMRMHQYPR---VAHMLSGGVDSLMAL-----RLLEKKKFYVHNFF-LHFAH--QEC 368

Query: 66  AKDEVRYVSDVCSR 79
           +K ++RYV  +CS+
Sbjct: 369 SKSDLRYVKKICSK 382


>gi|152971364|ref|YP_001336473.1| GMP synthase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238895961|ref|YP_002920697.1| GMP synthase [Klebsiella pneumoniae NTUH-K2044]
 gi|226739636|sp|A6TCC2|GUAA_KLEP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|150956213|gb|ABR78243.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238548279|dbj|BAH64630.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 221 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V +       +    V  +          +  EA+  +I          E  K  +   
Sbjct: 272 QVMEMFGDHFGLNIVHVEGEQRFLDALAGESDPEAKRKIIGRVFVEVFDEEALKLDDVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|324011211|gb|EGB80430.1| GMP synthase protein [Escherichia coli MS 60-1]
          Length = 520

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 207 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 260

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 261 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 317

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 318 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 374

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 375 FKDEVRKIGLELGLPY 390


>gi|309363500|emb|CAP26308.2| hypothetical protein CBG_06062 [Caenorhabditis briggsae AF16]
          Length = 393

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 45/145 (31%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------------- 65
            +++ +SGG DS      L      + F  +    ++     RE+               
Sbjct: 5   RVVIGMSGGVDSAVSAFLLK----QKGFDVVGLHMVT-HSRQRESEKKNISQINWDSQEE 59

Query: 66  -------AKDEVRYVSDVCSRLRIAHSVVSW----------------KNSKPQTGLMAAA 102
                  +KDE     +VC+RL I    V++                K  +     +   
Sbjct: 60  GSSTCPRSKDEAD-ARNVCNRLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCN 118

Query: 103 REARYALISEHAKT-INATLIMTAH 126
              ++    + A+   +A  I T H
Sbjct: 119 YSIKFDAFHKVAQETFDADFIATGH 143


>gi|291288175|ref|YP_003504991.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885335|gb|ADD69035.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 344

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 36/125 (28%), Gaps = 27/125 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-----SAISVDHCLRETAKDEVRYV 73
              +L+A+SGG DS      +     D     IKF      A+           D  +  
Sbjct: 2   KEKVLIAMSGGVDSTLTAHIMKEKGYDVIGCTIKFFDEQTEALH----------DGEKAA 51

Query: 74  SDVCSRL-----------RIAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINATL 121
            ++                +    +            A   R A++  +    K+  AT 
Sbjct: 52  KELGIDWYYADYTDYFKEDVISYFIRTYIQGRTPNPCAHCNRHAKFNYLFREMKSKGATK 111

Query: 122 IMTAH 126
           I T H
Sbjct: 112 IATGH 116


>gi|260655872|ref|ZP_05861341.1| GMP synthase [Jonquetella anthropi E3_33 E1]
 gi|260629488|gb|EEX47682.1| GMP synthase [Jonquetella anthropi E3_33 E1]
          Length = 509

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 65/184 (35%), Gaps = 22/184 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           + + V    ++  +SGG DS      +   + DR         I V++  LR+   +EV 
Sbjct: 208 IDAKVGNDKVICGLSGGVDSSVAAALVSRAIGDR------LECIFVNNGLLRQNEAEEV- 260

Query: 72  YVSDVCS-RLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAKTINATLIM 123
            +      +L + +   S +     TG++   R+ +            +  K   A  ++
Sbjct: 261 -LESYKQMKLNVHYVDASEQFLSALTGVIEPERKRKIIGETFIRVFEEQARKIKGARWLL 319

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+      R      +        +  D+N+ +  P     ++++R+    
Sbjct: 320 QGTLYPDVIES----GAR-KGADVIKSHHNVGGLPQDMNMNLLEPLRDLFKDEVRALGRL 374

Query: 184 RNIS 187
             + 
Sbjct: 375 LGLP 378


>gi|51893527|ref|YP_076218.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
 gi|81388362|sp|Q67LS2|MNMA_SYMTH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|51857216|dbj|BAD41374.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 390

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 61/217 (28%), Gaps = 78/217 (35%)

Query: 20  AHILVAVSGGSDSMGLLIALH--------------------SVLSDRSFGKIKFSAISVD 59
             +L+A+SGG DS      L                      +  ++  G    +A+   
Sbjct: 28  KRVLMAMSGGVDSSVAAALLVEQGYEVIGVTMNTWTDDIPEEIQMNQHSGCCSLAAV--- 84

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAAREA---------R 106
                   ++ R V     +L I + V++++    +T     +    R           R
Sbjct: 85  --------EDARSV---AHKLGIPYYVMNFQGQFARTVIDYFIEEYTRGRTPNPCIACNR 133

Query: 107 Y---ALISEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
           Y   +   E AK +    + T H      DD+               G  L G       
Sbjct: 134 YVKFSAFLEKAKQLECDYVATGHYAVIGQDDR-------------FPGRWLLGKSADARK 180

Query: 160 DLNLWI-----------SRPFLRCRREDIRSFLLQRN 185
           D    +             P    ++ ++R+   +  
Sbjct: 181 DQTYVLHNLTQEALAHTLFPVGHLQKSEVRALAAKYG 217


>gi|239917509|ref|YP_002957067.1| sulfate adenylyltransferase subunit 2 [Micrococcus luteus NCTC
           2665]
 gi|281414001|ref|ZP_06245743.1| sulfate adenylyltransferase subunit 2 [Micrococcus luteus NCTC
           2665]
 gi|239838716|gb|ACS30513.1| sulfate adenylyltransferase subunit 2 [Micrococcus luteus NCTC
           2665]
          Length = 311

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V     PA +    SGG DS+ +L            G+I F  + VD  H 
Sbjct: 26  EAIHIIREVVAEFERPAML---FSGGKDSVVMLHLAAKAF---WPGRIPFPVVHVDTGHN 79

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
                 + + +      RL +   V S +    +  L   A
Sbjct: 80  F----PEVLEFRDRTVERLGLRLVVGSVQEYIDRGELRERA 116


>gi|262196730|ref|YP_003267939.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haliangium ochraceum DSM 14365]
 gi|262080077|gb|ACY16046.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Haliangium ochraceum DSM 14365]
          Length = 391

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 60/189 (31%), Gaps = 28/189 (14%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           I+ A+SGG DS      L                   ++ SV    R     ++     V
Sbjct: 7   IVAALSGGVDSAVTAAMLVEQGHRVVGMTMRLYDASGTSASV--GGRCCGPRDIEDARRV 64

Query: 77  CSRLRIAHSVVSWKN---------------SKPQTGLMAAARE-ARYALISEHAKTINAT 120
           C+ L I   VV+++                +           +  ++  +   A+ + A 
Sbjct: 65  CAHLGIPFYVVNFEVDFAHTVIDDFVDTYLAGETPNPCVKCNQHIKFTPLLARARALGAE 124

Query: 121 LIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + T H    +D    + +R  RD ++     S    ++  +    +  P     ++++R
Sbjct: 125 TVATGHYARLEDTGAGIRLRRGRDASKDQ---SYFLFSMPREELASVRFPLGAMTKDEVR 181

Query: 179 SFLLQRNIS 187
                  + 
Sbjct: 182 DKARAYGLP 190


>gi|227485722|ref|ZP_03916038.1| PP-loop superfamily ATP-binding protein [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236277|gb|EEI86292.1| PP-loop superfamily ATP-binding protein [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 277

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 60/190 (31%), Gaps = 36/190 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-KDEVR 71
           +R L+    I++A SGG DS  LL    S+  + +     F           ++ ++++ 
Sbjct: 12  MRDLLKE-KIVLAFSGGVDSALLLKIASSLRQNENDVVAMFFKA-------PSSTEEDLV 63

Query: 72  YVSDVCSRLRIAHSVVSWK--NSKPQTGLM-AAAREARYALISEHA---KTINATLIMTA 125
              ++   +++   +           T          +  L  +       +    ++  
Sbjct: 64  NAKNLAEEMQVKLYIKDVDIFVDDHITNNEKDRCYHCKSHLFKQAIDLKDELGYGYVIDG 123

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQ 183
              DD            +     GL  +        NL +  P       +E +R+   +
Sbjct: 124 TNTDD------------HKVYRPGLMALK-------NLGVVSPLNMAGFSKEMVRALASE 164

Query: 184 RNISWCEDPS 193
             +S  + PS
Sbjct: 165 LGVSVAKRPS 174


>gi|227515257|ref|ZP_03945306.1| PP-loop superfamily ATP-binding protein [Lactobacillus fermentum
           ATCC 14931]
 gi|227086386|gb|EEI21698.1| PP-loop superfamily ATP-binding protein [Lactobacillus fermentum
           ATCC 14931]
          Length = 278

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 77/288 (26%), Gaps = 70/288 (24%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            ++  +       +L     ++V  SGG DS      L   L       +          
Sbjct: 1   MMTLADKETTLQNTLKAYNRVVVGFSGGIDSTV---VLKEALDVLGHDNVLAVVA----- 52

Query: 62  LRETA----KDEVRYVSDVCSRL-----RIAHSVVSWKNSKPQTGLM-AAAREARYALIS 111
               +      E      +   +      I    ++    K  T     A ++  Y  ++
Sbjct: 53  ---NSELFLDAEYEMAGQLAKDMGAQVTGIQLDYLANDQIKHNTPESWYAMKQMFYQAMT 109

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF-- 169
           + A   NA  ++     DD  +  +    R   E G                    P   
Sbjct: 110 QVATQFNADAVLDGMIMDDNAD--FRPGLRARDEAGA-----------------VSPLQT 150

Query: 170 LRCRREDIRSFLLQRNI---------------SWCEDPSNTD-------DRFER------ 201
               + ++R       +                +  D ++         + + R      
Sbjct: 151 ADLYKREVRELAQSLGLTNWNKVASCSVSSRFPYNTDLTSEKLQRVMAAETYLRSLGFAT 210

Query: 202 VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSI 249
           VRVR   +   +     ++ +      KV+  +  L   Y+TV ++  
Sbjct: 211 VRVRVHDQIARIEVPVNQLSQLVAQNEKVSEHLRQLGYNYITVDLQGF 258


>gi|94676486|ref|YP_589073.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|254800087|sp|Q1LSJ1|GUAA_BAUCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|94219636|gb|ABF13795.1| GMP synthetase, glutamine-hydrolyzing [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 526

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 24/188 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKDE 69
           ++  V   ++++ +SGG DS    + LH  +       +  + I +D+ L    E +   
Sbjct: 221 IKEQVGKENVVLGLSGGVDSTVTAMLLHYAI------GVNLTCIFIDNGLLRYNEASNIR 274

Query: 70  VRYVSDVCSRLRIAH---SVVSWKNSKPQTGLMAAAREARYALISEHAKTIN------AT 120
             +  ++   L I +        +            R+    L SE  +         AT
Sbjct: 275 EIFSKNL--SLNIIYVRSEDRFLRALAGIYNPEEK-RKIIGRLFSEIFEEQARSLTKTAT 331

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+             +        +   LNL +  P     ++++R  
Sbjct: 332 WLAQGTIYPDIIES---AISHVSLTNVIKSHHNVGGLPNTLNLKLIEPLKNLFKDEVRKI 388

Query: 181 LLQRNISW 188
            L+  + +
Sbjct: 389 GLELGLPF 396


>gi|91224505|ref|ZP_01259767.1| exsB protein [Vibrio alginolyticus 12G01]
 gi|91190847|gb|EAS77114.1| exsB protein [Vibrio alginolyticus 12G01]
          Length = 218

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL++          +  AI+ D+  R +  DE+    ++  +L
Sbjct: 7  LVV-FSGGQDSTTCLIDALNTYD--------EVHAITFDYGQRHS--DEIDIAIELGKQL 55

Query: 81 RIA-HSVVSWK 90
           I  H V+  K
Sbjct: 56 NIKSHKVLDVK 66


>gi|330993151|ref|ZP_08317089.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1]
 gi|329759921|gb|EGG76427.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1]
          Length = 376

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 39/133 (29%), Gaps = 37/133 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---------AISVDHCLRETAKDEVR 71
            ILVA+SGG DS  +   L     +     ++           A          A  ++ 
Sbjct: 12  RILVAMSGGVDSSVVAARLVDEGHEVIGATLQLYDSRESTKKGACC--------AGRDIH 63

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL------------------ISEH 113
               V  RL I H V+  +     + +   A    YA                   +   
Sbjct: 64  DARRVADRLGIPHYVIDAERRFHDSVIGTFADA--YAAGETPVPCVACNQGVKFTDLLGM 121

Query: 114 AKTINATLIMTAH 126
           A+ +    + T H
Sbjct: 122 ARELGVDAMATGH 134


>gi|315180244|gb|ADT87158.1| queuosine biosynthesis protein QueC [Vibrio furnissii NCTC 11218]
          Length = 229

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQTLAKKL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|260768532|ref|ZP_05877466.1| queuosine Biosynthesis QueC ATPase [Vibrio furnissii CIP 102972]
 gi|260616562|gb|EEX41747.1| queuosine Biosynthesis QueC ATPase [Vibrio furnissii CIP 102972]
          Length = 229

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQTLAKKL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|239906875|ref|YP_002953616.1| GMP synthase [Desulfovibrio magneticus RS-1]
 gi|259647678|sp|C4XSN8|GUAA_DESMR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|239796741|dbj|BAH75730.1| GMP synthase [Desulfovibrio magneticus RS-1]
          Length = 516

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 72/194 (37%), Gaps = 22/194 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E+    ++  V    ++ A+SGG DS  + + LH  +        K   I VD+  L
Sbjct: 204 SFLETELASLKEKVGDDEVVCALSGGVDSTVVAVMLHKAIGK------KLHCIFVDNGLL 257

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALIS-EH 113
           R    ++   Y+ +    L + H V + K    +   +    E R         +   E 
Sbjct: 258 RMGEGEEVAAYLREH-FDLNL-HYVDAAKLFLDKLAGVTDPEEKRKIIGKTFIEVFEVEA 315

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK      +     + D +E+V  +      +    + G+ +     + L +  P     
Sbjct: 316 AKLPKVKYLAQGTLYPDVIESVSFKGPSAVIKSHHNVGGLPEV----MKLALIEPLRELF 371

Query: 174 REDIRSFLLQRNIS 187
           ++++R   ++  + 
Sbjct: 372 KDEVRKVAVELGMP 385


>gi|313125263|ref|YP_004035527.1| nh(3)-dependent NAD(+) synthetase [Halogeometricum borinquense DSM
           11551]
 gi|312291628|gb|ADQ66088.1| NH(3)-dependent NAD(+) synthetase [Halogeometricum borinquense DSM
           11551]
          Length = 277

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 52/184 (28%), Gaps = 21/184 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHS-VLSDRSFGKIKFSAISVDHCLRE 64
           ++ +R  V        +L  +SGG DS          +  +   G +  S +        
Sbjct: 31  LQFIRDVVDGAGAEGAVL-GLSGGIDSTATAYLAAEALGKENLHGLVMPSVV-------- 81

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK-NSKPQTGLMAAAREARYALISEHAKTINATLIM 123
            + + +     V   L I + VV  +  ++        A   R A  + + +        
Sbjct: 82  NSDENMSDAERVAQELEIEYDVVEIQPIAETFFDTFPEAANDRMAAGNVYVRVRGVLNYF 141

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            A+  +        +       +   L+G      Y        P     ++ +R     
Sbjct: 142 VANHEN--------KIVLGTGNRSEALTGYFTK--YGDQAVDCNPIGNLYKQQVRQLAAH 191

Query: 184 RNIS 187
             + 
Sbjct: 192 VGVP 195


>gi|83942508|ref|ZP_00954969.1| hypothetical protein EE36_15747 [Sulfitobacter sp. EE-36]
 gi|83846601|gb|EAP84477.1| hypothetical protein EE36_15747 [Sulfitobacter sp. EE-36]
          Length = 233

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 56/192 (29%), Gaps = 37/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I++  SGG DS+ L      V ++R    +    +S D+  R   + E+ Y +    RL 
Sbjct: 4   IVI-CSGGLDSVSLAHM---VAANRKLTGL----VSFDYGQRH--RKELDYAALCAKRLD 53

Query: 82  IAHSVV----------------SWKNSKPQTGLMAAA------REAR-YALISEHAKTIN 118
           + H ++                                     R A    +    A    
Sbjct: 54  VRHDIIDMRGIGAALTGSALTDDVDVPDGHYAEETMRVTVVPNRNAIMLTVAYGIAAARG 113

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              + TA    D          R    +            Y  ++ +  PF+   + DI 
Sbjct: 114 DQAVATAVHGGDH---FIYPDCRPDFTQAFEFMQYMALDGYA-DVSLYTPFVHRSKADIV 169

Query: 179 SFLLQRNISWCE 190
           +   + N  + E
Sbjct: 170 TEGQRHNTPFAE 181


>gi|262306021|gb|ACY45603.1| gln amidotransferase [Nymphon unguiculatum-charcoti complex sp.
           SEM-1997]
          Length = 202

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           +    ++R  +  + +LV +SGG DS      +   +        +  A+ +D+   R++
Sbjct: 31  QECLSYIRQAIGKSKVLVFISGGVDSAVCAALIKKSILCDKESLDQMIAVHIDNGFMRKS 90

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
              E + V +    L I   V+S
Sbjct: 91  ---ESKQVEESLHNLGIRLIVIS 110


>gi|167747131|ref|ZP_02419258.1| hypothetical protein ANACAC_01844 [Anaerostipes caccae DSM 14662]
 gi|167654091|gb|EDR98220.1| hypothetical protein ANACAC_01844 [Anaerostipes caccae DSM 14662]
          Length = 219

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +  P   +V  SGG DS   L        +         A+S D+  ++ + DE+    +
Sbjct: 1  MSKPTKAVVVFSGGQDSTTCLFWAKKKYEE-------VIALSFDYG-QKHS-DELICAKE 51

Query: 76 VCSRLRIAHSVVS 88
          +C +  + H ++ 
Sbjct: 52 ICKKYGVEHHILD 64


>gi|117927580|ref|YP_872131.1| GMP synthase [Acidothermus cellulolyticus 11B]
 gi|117648043|gb|ABK52145.1| GMP synthase (glutamine-hydrolyzing) [Acidothermus cellulolyticus
           11B]
          Length = 522

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 62/195 (31%), Gaps = 22/195 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +  +   +R  +   + +  +SGG DS      +   + DR       + + VDH  L
Sbjct: 207 NIVSELVTAIREQIGDGYAICGLSGGVDSAVAAALVQRAIGDR------LTCVFVDHGLL 260

Query: 63  RETAKD--EVRYVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAAREARYALIS-------E 112
           R    +  E  +V+    RL +  +   +  +           R      I        +
Sbjct: 261 RAGEAEQVEQDFVAATGVRLHVVDAADRFLAALSGVVDPEEKRRIIGREFIRVFEAAAQD 320

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A +     ++    + D +E+             +        +  DL   +  P    
Sbjct: 321 IAASAPVEFLVQGTLYPDVVES-----GGGANAATIKSHHNVGGLPPDLRFRLVEPLRTL 375

Query: 173 RREDIRSFLLQRNIS 187
            ++++R+   +  + 
Sbjct: 376 FKDEVRAVGAELGLP 390


>gi|119386890|ref|YP_917945.1| exsB protein [Paracoccus denitrificans PD1222]
 gi|167016441|sp|A1B9Q5|QUEC_PARDP RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|119377485|gb|ABL72249.1| exsB protein [Paracoccus denitrificans PD1222]
          Length = 233

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I+V  SGG DS+ L   + +       G +    IS D+  R   + E+ Y +    RL 
Sbjct: 4  IVV-CSGGLDSVSLAHMVAA------QGGLT-RLISFDYGQRH--RKELDYAALAARRLG 53

Query: 82 IAHSVVSWKNSK 93
          + H V+  +   
Sbjct: 54 VPHHVIDMRGVG 65


>gi|326471688|gb|EGD95697.1| GMP synthase subunit B [Trichophyton tonsurans CBS 112818]
 gi|326483640|gb|EGE07650.1| GMP synthase [Trichophyton equinum CBS 127.97]
          Length = 541

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 29/206 (14%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
             ++     +R++V     ++ AVSGG DS      +   + DR      F A+ VD+  
Sbjct: 218 KFVDKELARIRAMVGEHGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDNGV 271

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116
           +R     E   V + +   L I  +V+     +             R+       E  + 
Sbjct: 272 MRLN---EAEIVRETLTKNLGINLTVIDASEKFLGRLKGVVDPEQKRKIIGNTFIEIFQD 328

Query: 117 INATLI--MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------LYDLNLWI 165
              TL+     +   D++E +   +      + +   G   TI         L  ++L +
Sbjct: 329 TAKTLVEESAGYKEGDKIEWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLKGMHLKL 388

Query: 166 SRPFLRCRREDIRSFLLQRNISWCED 191
             P     ++++RS      I   ED
Sbjct: 389 IEPLRELFKDEVRSLGTNLGIP--ED 412


>gi|228900021|ref|ZP_04064257.1| hypothetical protein bthur0014_12300 [Bacillus thuringiensis IBL
          4222]
 gi|228907072|ref|ZP_04070936.1| hypothetical protein bthur0013_12450 [Bacillus thuringiensis IBL
          200]
 gi|228964403|ref|ZP_04125517.1| hypothetical protein bthur0004_12520 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228795260|gb|EEM42752.1| hypothetical protein bthur0004_12520 [Bacillus thuringiensis
          serovar sotto str. T04001]
 gi|228852576|gb|EEM97366.1| hypothetical protein bthur0013_12450 [Bacillus thuringiensis IBL
          200]
 gi|228859635|gb|EEN04059.1| hypothetical protein bthur0014_12300 [Bacillus thuringiensis IBL
          4222]
          Length = 223

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            + +   L I H+V+ 
Sbjct: 50 CAAKIAKELGIKHTVLD 66


>gi|167039428|ref|YP_001662413.1| tRNA-specific 2-thiouridylase MnmA [Thermoanaerobacter sp. X514]
 gi|300915481|ref|ZP_07132794.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307725247|ref|YP_003904998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
 gi|166853668|gb|ABY92077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X514]
 gi|300888541|gb|EFK83690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X561]
 gi|307582308|gb|ADN55707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter sp. X513]
          Length = 376

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 61/395 (15%), Positives = 127/395 (32%), Gaps = 88/395 (22%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S      FF++       ++V +SGG DS      L             F  I V  
Sbjct: 1   MRESTRRLENFFMK---KNNRVVVGMSGGVDSSVSAYLLKEQG---------FDVIGVTM 48

Query: 61  CLRETAKDEVRYV-------------SDVCSRLRIAHSVVSWKNSKPQT----------- 96
            + +   +E   V               V +++ I + V+++K+   +            
Sbjct: 49  QIWQDKDEEAVRVEGGCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLR 108

Query: 97  ----GLMAAAREARYALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAE 145
                   A  +  Y    E  K    I+A  + T H      D++     ++   D ++
Sbjct: 109 GRTPNPCIACNK--YIKFEELLKRAWMIDAYYVATGHYAVKEYDEERGRYLLKKSVDTSK 166

Query: 146 KGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPS 193
                L  +  T L      I  P  + +++++R       +            +  D  
Sbjct: 167 DQTYVLYNLTQTQLE----HILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTD-- 220

Query: 194 NTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
           N   +F R   +  ++  +          F+D R +       +I   +       I++ 
Sbjct: 221 NDYGKFIRENAKEEIKPGE----------FRDTRGRFLGYHKGIIHYTIGQRKGLGISVG 270

Query: 254 QDI--LNIDSTLLFYLLRVSAAICGGQI-----SLPGYRSMERVMLFLKSGKRGCVSIGR 306
           + +  ++ID+     +L     + G ++     +      +ER M  +K+  R       
Sbjct: 271 KPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISIDKLEREM-RVKAKIRYNAKEQD 329

Query: 307 VVIDRRANFLWITRAVRNLPTLILYPEETTV-WDG 340
            VI    +     +   + P   + P ++ V +DG
Sbjct: 330 AVIRPLEDGKVFVK--FDNPQRAITPGQSVVFYDG 362


>gi|75759341|ref|ZP_00739438.1| Queuosine biosynthesis protein QueC [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
 gi|74493173|gb|EAO56292.1| Queuosine biosynthesis protein QueC [Bacillus thuringiensis
          serovar israelensis ATCC 35646]
          Length = 224

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            + +   L I H+V+ 
Sbjct: 50 CAAKIAKELGIKHTVLD 66


>gi|331084380|ref|ZP_08333484.1| argininosuccinate synthase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330401644|gb|EGG81225.1| argininosuccinate synthase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 408

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 56/202 (27%), Gaps = 39/202 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------HCLRETAKDE-- 69
              +++A SGG D+  L      +   +     +     ++         L E A     
Sbjct: 2   KEKVILAYSGGLDTTAL------IPWLKENFDYEVICCCINCGQGSELDGLEERAALSGA 55

Query: 70  -----VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                   V + C    +                 + AR      + + A+   A  I  
Sbjct: 56  SKLYIEDIVDEFCDDYIVPCVQAGAVYENKYLLGTSMARPPIAKKLVKIARKEGAVAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+     R +         L  +    + D+       +    RED   +  
Sbjct: 116 GATGKGNDQI-----RFELGIKALAPDLKIIAPWRMTDV-------WTMQSREDEMEYCK 163

Query: 183 QRNISWCED-PSNTDDRFERVR 203
              I    D P N  + + R R
Sbjct: 164 AHGI----DLPFNMSNSYSRDR 181


>gi|284006291|emb|CBA71526.1| GMP synthase [glutamine-hydrolyzing] [Arsenophonus nasoniae]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 63/186 (33%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE-- 69
           +++ +    +++A+SGG DS    + L+  +        + + + VD+  LR     +  
Sbjct: 221 LKAQIGDDQVILALSGGVDSSVTALLLNRAIGK------QLTCVFVDNGLLRLNEAQQVM 274

Query: 70  VRYVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
             +       L I H     +         +P+       R        + AK      +
Sbjct: 275 AMFAGKF--DLNIIHVAAEERFLNALAGIDEPELKRKTIGRVFIDVFDEQAAKQTQVKWL 332

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+    + + +  K          +  ++ + +  P     ++++R   L
Sbjct: 333 AQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPAEMRMGLVEPLKELFKDEVRKVGL 389

Query: 183 QRNISW 188
              + +
Sbjct: 390 ALGLPY 395


>gi|262306093|gb|ACY45639.1| gln amidotransferase [Phrynus marginemaculatus]
          Length = 196

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          ++R  V    +L+ VSGG DS      LH  L D      +  AI +D
Sbjct: 36 YIRKTVGTNKVLMLVSGGVDSTVCAALLHKALKDD-----QVIAIHID 78


>gi|330007868|ref|ZP_08306090.1| GMP synthase domain protein [Klebsiella sp. MS 92-3]
 gi|328535280|gb|EGF61768.1| GMP synthase domain protein [Klebsiella sp. MS 92-3]
          Length = 543

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +          + + VD+  LR     E +
Sbjct: 239 IRQQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLN---EAQ 289

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V +       +    V  +          +  EA+  +I          E  K  +   
Sbjct: 290 QVMEMFGDHFGLNIVHVEGEQRFLDALAGESDPEAKRKIIGRVFVEVFDEEALKLDDVKW 349

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ + +  P     ++++R   
Sbjct: 350 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLRELFKDEVRKIG 406

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 407 LELGLPY 413


>gi|325675181|ref|ZP_08154866.1| hypothetical protein HMPREF0724_12648 [Rhodococcus equi ATCC
          33707]
 gi|325553887|gb|EGD23564.1| hypothetical protein HMPREF0724_12648 [Rhodococcus equi ATCC
          33707]
          Length = 73

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 3  LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
          L    +VR ++        ++VA+SGG+DS+       ++ +          A+ VDH L
Sbjct: 17 LEVRHAVRAWLARHQPAGGVVVALSGGADSL-------ALTAAAVAEAPSVRAVVVDHRL 69

Query: 63 RETA 66
          ++ +
Sbjct: 70 QDGS 73


>gi|323159377|gb|EFZ45362.1| GMP synthase [Escherichia coli E128010]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLR-----IAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D            +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVYVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|323345225|ref|ZP_08085448.1| transcription regulator ExsB [Prevotella oralis ATCC 33269]
 gi|323093339|gb|EFZ35917.1| transcription regulator ExsB [Prevotella oralis ATCC 33269]
          Length = 218

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 39/188 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ +L        DR    I F     D+        E+ Y    C RL I H 
Sbjct: 8   VSGGMDSVTMLY----EYQDRIALGISF-----DYG-SNHNAKEIPYARLHCKRLGIRHI 57

Query: 86  VVS--WKNSKPQTGLMAAARE-----------------AR----YALISEHAKTINATLI 122
           V+   + +   ++ L+  A                    R     ++    A++ +   +
Sbjct: 58  VIDLGFVHQYFKSSLLEGADAIPEGSYNEGNMKSTVVPFRNGIMLSIAVGVAESHHLKYV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           M A+   D           D     +       T      + +  P+    + DI     
Sbjct: 118 MMANHGGDHA------IYPDCRPDFVAAMSTAATAGTYEKVCVLAPYTGITKTDIARRGQ 171

Query: 183 QRNISWCE 190
           +  +++ E
Sbjct: 172 KFGVNFAE 179


>gi|312134199|ref|YP_004001537.1| exsb protein [Caldicellulosiruptor owensensis OL]
 gi|311774250|gb|ADQ03737.1| exsB protein [Caldicellulosiruptor owensensis OL]
          Length = 217

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS  LL        D      +  AIS  +  ++ +K E+ +    CS L I H 
Sbjct: 3  LSGGMDSTTLLY-------DVKNQGYEVFAISFLYG-QKHSK-ELEFAKKTCSLLSIPHR 53

Query: 86 VVSW 89
          +V  
Sbjct: 54 IVDI 57


>gi|89097394|ref|ZP_01170283.1| aluminum resistance protein [Bacillus sp. NRRL B-14911]
 gi|89087690|gb|EAR66802.1| aluminum resistance protein [Bacillus sp. NRRL B-14911]
          Length = 218

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I+V  SGG DS   L       + ++F +++  A++ D+  R  A  E+     + + L 
Sbjct: 7  IVV-FSGGQDSTTCLF-----WAKKNFKEVE--AVTFDYGQRHIA--ELECARRIAADLA 56

Query: 82 IAHSVVS 88
          I H V+ 
Sbjct: 57 IQHHVLD 63


>gi|313632417|gb|EFR99442.1| argininosuccinate synthase [Listeria seeligeri FSL N1-067]
 gi|313636935|gb|EFS02532.1| argininosuccinate synthase [Listeria seeligeri FSL S4-171]
          Length = 404

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 60/193 (31%), Gaps = 47/193 (24%)

Query: 19  PAHILVAVSGGSD-SMG---LLIA-------LHSVLSDRSFGKIKFSAISVDHCLRETA- 66
              I++A SGG D S+    L  A          V   ++   IK  AI+V       + 
Sbjct: 3   KEKIVLAYSGGLDTSVAIQWLAEAGYEIIACCLDVGEGKNLDFIKEKAITV-----GASQ 57

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                 +  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 58  SYTIDAKEEFAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARKEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + NI    D
Sbjct: 156 NYAQEHNIPVPID 168


>gi|312888753|ref|ZP_07748317.1| GMP synthase, large subunit [Mucilaginibacter paludis DSM 18603]
 gi|311298753|gb|EFQ75858.1| GMP synthase, large subunit [Mucilaginibacter paludis DSM 18603]
          Length = 509

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +E+    ++  +    +++ +SGG DS    + LH  +            I VD+ L
Sbjct: 198 SFVETTIAALKEKLGDDKVVLGLSGGVDSSVAAVLLHHAIGK------NLHCIFVDNGL 250


>gi|302497947|ref|XP_003010972.1| hypothetical protein ARB_02704 [Arthroderma benhamiae CBS 112371]
 gi|302664979|ref|XP_003025848.1| hypothetical protein TRV_01737 [Trichophyton verrucosum HKI 0517]
 gi|291174519|gb|EFE30332.1| hypothetical protein ARB_02704 [Arthroderma benhamiae CBS 112371]
 gi|291188145|gb|EFE43494.1| hypothetical protein TRV_01737 [Trichophyton verrucosum HKI 0517]
          Length = 541

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 29/206 (14%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
             ++     +R++V     ++ AVSGG DS      +   + DR      F A+ VD+  
Sbjct: 218 KFVDKELARIRAMVGEHGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDNGV 271

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116
           +R     E   V + +   L I  +V+     +             R+       E  + 
Sbjct: 272 MRLN---EAEIVRETLTKNLGINLTVIDASEKFLGRLKGVVDPEQKRKIIGNTFIEIFQD 328

Query: 117 INATLI--MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------LYDLNLWI 165
              TL+     +   D++E +   +      + +   G   TI         L  ++L +
Sbjct: 329 TAKTLVEESAGYKEGDKIEWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLKGMHLKL 388

Query: 166 SRPFLRCRREDIRSFLLQRNISWCED 191
             P     ++++RS      I   ED
Sbjct: 389 IEPLRELFKDEVRSLGTNLGIP--ED 412


>gi|161936317|ref|YP_129360.2| tRNA-specific 2-thiouridylase MnmA [Photobacterium profundum SS9]
          Length = 371

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMK--------NWEEDDNEEYCSAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            + A  I   H
Sbjct: 119 VLEADYIAMGH 129


>gi|118616681|ref|YP_905013.1| GMP synthase [Mycobacterium ulcerans Agy99]
 gi|118568791|gb|ABL03542.1| GMP synthase, GuaA [Mycobacterium ulcerans Agy99]
          Length = 527

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +   H +  +SGG DS      +  V+ DR       + + VDH  LR   + +V 
Sbjct: 221 VRTQIGDGHAICGLSGGVDSAVAAALVQRVIGDR------LTCVFVDHGLLRAGERAQVE 274

Query: 72  --YVSDVCSRL---RIAHSVVSWK--NSKPQTGLMAAAREARYALISEHAKTINA---TL 121
             +V+   + L    +A + ++     + P+       R+   A        ++      
Sbjct: 275 RDFVAATKANLVTVDVADTFLAALSGVTDPEGKRKIIGRQFIRAFEGAVRDVLDGRDVEF 334

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+             +        +  DL   +  P     ++++R+  
Sbjct: 335 LVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDLKFTLVEPLRLLFKDEVRAVG 389

Query: 182 LQRNIS 187
            +  + 
Sbjct: 390 RELGLP 395


>gi|90410884|ref|ZP_01218898.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Photobacterium profundum 3TCK]
 gi|90328097|gb|EAS44408.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Photobacterium profundum 3TCK]
          Length = 527

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     ++  V    +++ +SGG DS  + + LH  + D      K + + VD+  L
Sbjct: 214 NIIEDAIANIKEQVGDDEVILGLSGGVDSSVVAMLLHRAIGD------KLTCVFVDNGLL 267

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +       +    V  ++            EA+  +I           
Sbjct: 268 RLN---EGEQVMEMFGDHFGLNIVHVKAEDRFLNALAGENDPEAKRKIIGHVFIDVFDEE 324

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + ++     +        +  D+ + +  P    
Sbjct: 325 SKKLENAKWLAQGTIYPDVIES---AASKNGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 381

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 382 FKDEVRKIGLELGLPY 397


>gi|90413208|ref|ZP_01221203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium profundum 3TCK]
 gi|90325760|gb|EAS42218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium profundum 3TCK]
          Length = 371

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMK--------NWEEDDNEEYCSAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAH 126
            + A  I   H
Sbjct: 119 VLEADYIAMGH 129


>gi|81615317|sp|Q6LT18|MNMA_PHOPR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|46912768|emb|CAG19558.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Photobacterium profundum SS9]
          Length = 377

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 13  KKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMK--------NWEEDDNEEYCSAAEDLAD 64

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++             A  +  R               A +    +
Sbjct: 65  AQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 124

Query: 116 TINATLIMTAH 126
            + A  I   H
Sbjct: 125 VLEADYIAMGH 135


>gi|300784751|ref|YP_003765042.1| sulfate adenylyltransferase subunit 2 [Amycolatopsis mediterranei
           U32]
 gi|299794265|gb|ADJ44640.1| sulfate adenylyltransferase subunit 2 [Amycolatopsis mediterranei
           U32]
          Length = 316

 Score = 43.4 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 9/128 (7%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLR 63
           E+V  F   +  +   +L+  SGG DS+ +L A            + F  + VD  H   
Sbjct: 29  EAVHVFREVAATFERPVLL-FSGGKDSVVMLHAAAKAF---WPAPLPFPVLHVDTGHNFD 84

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINATL 121
           E  +     V+    RL +A         +   +TG  A+    +   +    +      
Sbjct: 85  EVLRFRDETVAAFGLRLEVASVQDDLDAGRVVEETGPRASRNRLQTVTLLRAIREGRFDA 144

Query: 122 IMTAHTFD 129
           +      D
Sbjct: 145 VFGGARRD 152


>gi|262306047|gb|ACY45616.1| gln amidotransferase [Eurypauropus spinosus]
          Length = 197

 Score = 43.4 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++++ V    +L+ VSGG DS   +  LH  L     G     A+ +D+   R+ 
Sbjct: 31  EQCIQYIKNTVGRNKVLMLVSGGVDSTVCVALLHKAL-----GAENVIALHIDNGFMRKN 85

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
              E + V     ++ +   VV+
Sbjct: 86  ---ESQQVEXSLRKIGLQIKVVN 105


>gi|305680191|ref|ZP_07403001.1| GMP synthase (glutamine-hydrolyzing) [Corynebacterium matruchotii
           ATCC 14266]
 gi|305660811|gb|EFM50308.1| GMP synthase (glutamine-hydrolyzing) [Corynebacterium matruchotii
           ATCC 14266]
          Length = 532

 Score = 43.4 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 35/203 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE+VR     +   +  +  +SGG DS     A+ + L  R+ G  + + + VDH L 
Sbjct: 214 ELIETVR---EQVGDTSRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLL 264

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI--SEHAKTIN 118
           R   +++V+  +V    ++L      V  + +           EA+   I          
Sbjct: 265 RAGEREQVQTDFVKATGAKL----VTVDEREAFLSKLAGVTDPEAKRKAIGNEFIRSFER 320

Query: 119 ATLIMTAHTFDDQLET-----VYMRSQ---------RDYAEKGMGLSGMCDTILYDLNLW 164
           A  ++ A   D+  +T       ++                  +        +  DL   
Sbjct: 321 AVGLVLA---DEPADTVGAVEFLVQGTLYPDVVESGGGAGTANIKSHHNVGGLPEDLEFQ 377

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++R+   +  + 
Sbjct: 378 LVEPLRLLFKDEVRAVGRELGLP 400


>gi|78183626|ref|YP_376060.1| GMP synthase [Synechococcus sp. CC9902]
 gi|123582368|sp|Q3B0W1|GUAA_SYNS9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78167920|gb|ABB25017.1| GMP synthase (glutamine-hydrolyzing) [Synechococcus sp. CC9902]
          Length = 528

 Score = 43.4 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           I+     VR  V    +L+A+SGG DS  L   L   + D+
Sbjct: 211 IDEAVALVREQVGQKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|21673367|ref|NP_661432.1| ExsB protein [Chlorobium tepidum TLS]
 gi|81791733|sp|Q8KF00|QUEC_CHLTE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|21646463|gb|AAM71774.1| exsB protein [Chlorobium tepidum TLS]
          Length = 227

 Score = 43.4 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +L+ VSGG DS+      H          ++ +A+ V++  R   + E+     +C    
Sbjct: 4  VLL-VSGGMDSLVATALAHR-------EGLELAAMHVNYGQRTW-QKELECFRQICVHYG 54

Query: 82 I 82
          I
Sbjct: 55 I 55


>gi|332666122|ref|YP_004448910.1| Argininosuccinate synthase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334936|gb|AEE52037.1| Argininosuccinate synthase [Haliscomenobacter hydrossis DSM 1100]
          Length = 397

 Score = 43.4 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 26/179 (14%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S  +L              ++  A++VD      + ++++ + +   +
Sbjct: 5   KVVLAYSGGLDTSFCILHLTKD-------KGLEVHALTVDTG--GFSAEQLKTMEERALQ 55

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L       S++ +             RY +     +     L ++A      +ET     
Sbjct: 56  LG----AKSFRVANALHDYYDQC--IRYMVFGNVLRNNTYPLSVSAERMFQAIETAKYAQ 109

Query: 140 QRDYAEKGMGLSGMCDTILY--------DLNLWISRPF--LRCRREDIRSFLLQRNISW 188
           +        G +G  +  +           NL I  P   ++  R+    +L++   +W
Sbjct: 110 EIGAGAVAHGSTGAGNDQVRFDLAFNVLGQNLEIITPIRDMQLSRQAEIDYLIEHGYNW 168


>gi|213029680|ref|ZP_03344127.1| tRNA(Ile)-lysidine synthetase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 159

 Score = 43.4 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 22/133 (16%)

Query: 283 GYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWITRAVR-NLPTLILYPEETTVW 338
              ++ER+       +     C+  G   I R  + LW  + V     T + +P   T  
Sbjct: 1   SRDALERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKTVAGQHETTVAWPVWQT-- 58

Query: 339 DGRYQFQNLSDSLIQIGPQSYRKADVPSGIPPIIAQ---RALSSMPSKEGGKPL------ 389
                   L   L  +      +   P     +  +     L  +  + GG+ L      
Sbjct: 59  -----PLALPAGLGTVQLVPGGELRRPREEESVSIRFKAPGLLHIVGRHGGRKLKKIWQE 113

Query: 390 --LAPFSRFMTKF 400
             + P+ R  T  
Sbjct: 114 QGIPPWRRDTTPL 126


>gi|116071765|ref|ZP_01469033.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. BL107]
 gi|116065388|gb|EAU71146.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Synechococcus sp. BL107]
          Length = 528

 Score = 43.4 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           I+     VR  V    +L+A+SGG DS  L   L   + D+
Sbjct: 211 IDEAVALVREQVGQKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|90423553|ref|YP_531923.1| PP-loop [Rhodopseudomonas palustris BisB18]
 gi|90105567|gb|ABD87604.1| PP-loop [Rhodopseudomonas palustris BisB18]
          Length = 343

 Score = 43.4 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 24/93 (25%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC----- 77
           +VA SGG DS  LL  L       S   ++  A++ D+           +VS  C     
Sbjct: 63  VVAFSGGKDSSYLLHLLA------SRFGLRLLAVTFDNG----------FVSAACLTNMR 106

Query: 78  ---SRLRIAHSVVSWKNSKPQTGLMAAAREARY 107
              S L I H +V  +        + +A    Y
Sbjct: 107 NVVSALAIDHIIVRHRQDHMNALFLESALARVY 139


>gi|256371277|ref|YP_003109101.1| GMP synthase, large subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007861|gb|ACU53428.1| GMP synthase, large subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 517

 Score = 43.4 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 30/197 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     VRS V     + A+SGG DS          + DR       + + VD   L
Sbjct: 206 SIIEQAIAEVRSTVGDGRAICALSGGVDSTVAAALTAEAIGDR------LTCVFVDTGLL 259

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALI-----SEH 113
           R    ++V ++    S+  I   VV     + ++        A R+    L         
Sbjct: 260 RSGEAEQVEHLFR--SQFDIELIVVDAADRFFDALAGVTDPEAKRKIIGELFIRIFEETA 317

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFL 170
           A   NAT ++    + D +E             G            +  D+   I  P  
Sbjct: 318 ASKTNATHLVQGTLYPDIVE---------SGSDGSATIKSHHNVGGLPDDVAFTIVEPLR 368

Query: 171 RCRREDIRSFLLQRNIS 187
           R  ++++R   ++  I 
Sbjct: 369 RLFKDEVRRIGVELGIP 385


>gi|218706008|ref|YP_002413527.1| GMP synthase [Escherichia coli UMN026]
 gi|293405945|ref|ZP_06649937.1| GMP synthase [Escherichia coli FVEC1412]
 gi|298381747|ref|ZP_06991346.1| GMP synthase [Escherichia coli FVEC1302]
 gi|300898393|ref|ZP_07116736.1| GMP synthase protein [Escherichia coli MS 198-1]
 gi|331673959|ref|ZP_08374722.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA280]
 gi|226738449|sp|B7N691|GUAA_ECOLU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|218433105|emb|CAR14000.1| GMP synthetase (glutamine aminotransferase) [Escherichia coli
           UMN026]
 gi|291428153|gb|EFF01180.1| GMP synthase [Escherichia coli FVEC1412]
 gi|298279189|gb|EFI20703.1| GMP synthase [Escherichia coli FVEC1302]
 gi|300357933|gb|EFJ73803.1| GMP synthase protein [Escherichia coli MS 198-1]
 gi|331069232|gb|EGI40624.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli TA280]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEARFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|119944857|ref|YP_942537.1| exsB protein [Psychromonas ingrahamii 37]
 gi|189038943|sp|A1STX3|QUEC_PSYIN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|119863461|gb|ABM02938.1| exsB protein [Psychromonas ingrahamii 37]
          Length = 221

 Score = 43.4 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            ++V  SGG DS      LH  +       +   A++ D+  R     E+    +VC  
Sbjct: 3  KKVVVIYSGGMDS---FTVLHKAMQQ----GLTPYALTFDYGQRH--IKEIEVAREVCEE 53

Query: 80 LRIAHSVVSWKN 91
          L + H V+    
Sbjct: 54 LGVHHKVIDISA 65


>gi|91792628|ref|YP_562279.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Shewanella denitrificans OS217]
 gi|123061095|sp|Q12PS0|GUAA_SHEDO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91714630|gb|ABE54556.1| GMP synthase (glutamine-hydrolyzing) [Shewanella denitrificans
           OS217]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +++ V    +++ +SGG DS  + + LH  +        K + + VD+  L
Sbjct: 212 SIIEDAIERIKAQVGDDEVILGLSGGVDSSVVAMLLHRAIGK------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +       +    V  +N         A  EA+  +I           
Sbjct: 266 RLN---EAEQVLEMFGDHFGLNIVHVDAENRFLDAMAGVADPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +  D+ + +  P    
Sbjct: 323 SKKCANAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|327309540|ref|XP_003239461.1| GMP synthase subunit B [Trichophyton rubrum CBS 118892]
 gi|326459717|gb|EGD85170.1| GMP synthase subunit B [Trichophyton rubrum CBS 118892]
          Length = 541

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 29/206 (14%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
             ++     +R++V     ++ AVSGG DS      +   + DR      F A+ VD+  
Sbjct: 218 KFVDKELARIRAMVGEHGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDNGV 271

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116
           +R     E   V + +   L I  +V+     +             R+       E  + 
Sbjct: 272 MRLN---EAEIVRETLTKNLGINLTVIDASEKFLGRLKGVVDPEQKRKIIGNTFIEIFQD 328

Query: 117 INATLI--MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------LYDLNLWI 165
              TL+     +   D++E +   +      + +   G   TI         L  ++L +
Sbjct: 329 TAKTLVEESAGYKEGDKIEWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLKGMHLKL 388

Query: 166 SRPFLRCRREDIRSFLLQRNISWCED 191
             P     ++++RS      I   ED
Sbjct: 389 IEPLRELFKDEVRSLGTNLGIP--ED 412


>gi|313905756|ref|ZP_07839115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium cellulosolvens 6]
 gi|313469362|gb|EFR64705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eubacterium cellulosolvens 6]
          Length = 363

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 47/148 (31%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---------- 67
               ++V +SGG DS      L     +     ++          ++ ++          
Sbjct: 4   KDKTVVVGMSGGVDSSVAAYLLKEQGYNVIGVTMQI--------WQDESECRLENEGGCC 55

Query: 68  -----DEVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REAR 106
                ++ R V+ V   L I + V+++K    +                    A  R  +
Sbjct: 56  GVTAVEDARRVAGV---LGIPYYVMNFKEEFQKNVIDYFVDEYLHGRTPNPCIACNRYVK 112

Query: 107 YALISEHAKTINATLIMTAH-----TFD 129
           +  +   +  I A  I T H       D
Sbjct: 113 WESLLTKSLAIGADYIATGHYARIRHLD 140


>gi|260171966|ref|ZP_05758378.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2]
          Length = 350

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 39/180 (21%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSV 86
           SGG DS    + L           +                DE +   ++  R+ I H V
Sbjct: 2   SGGIDSTATCLMLQE--QGYEIVGVTMRVW----------GDEPQDARELAVRMGIEHYV 49

Query: 87  VSWKNSKPQT---GLMAAAREAR-------------YALISEHAKTINATLIMTAHTFDD 130
              +    +T     +   ++ R             + +++E A  +N   I T H    
Sbjct: 50  ADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWIATGHYS-- 107

Query: 131 QLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           +LE     T  +    D  ++   L  +   +L         P     +  +R +L ++ 
Sbjct: 108 RLEEKNGYTYIVAGDDDKKDQSYFLWRLGQEVLKRC----IFPLGDYTKVKVREYLAEKG 163


>gi|241758623|ref|ZP_04756737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria flavescens SK114]
 gi|241321134|gb|EER57330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria flavescens SK114]
          Length = 367

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 49/200 (24%), Gaps = 48/200 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVRY 72
           P +I+V +SGG DS      L                    H +           D   Y
Sbjct: 7   PTNIIVGLSGGVDSSVTAALLKQQG----------------HQISGVFMQNWEDDDNDEY 50

Query: 73  VS----------------------DVCSRL--RIAHSVVSWKNSKPQTGLMAAA-REARY 107
            S                      +  ++    +    +   ++            E ++
Sbjct: 51  CSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKF 110

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
               ++A    A  I T H    ++        +   +       +     + L   I  
Sbjct: 111 KCFLDYAIEQGADTIATGHYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERAIF- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  + 
Sbjct: 170 PLGELEKPEVRRLAEEFKLP 189


>gi|225077158|ref|ZP_03720357.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens
           NRL30031/H210]
 gi|224951506|gb|EEG32715.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens
           NRL30031/H210]
          Length = 367

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 49/200 (24%), Gaps = 48/200 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE------TAKDEVRY 72
           P +I+V +SGG DS      L                    H +           D   Y
Sbjct: 7   PTNIIVGLSGGVDSSVTAALLKQQG----------------HQISGVFMQNWEDDDNDEY 50

Query: 73  VS----------------------DVCSRL--RIAHSVVSWKNSKPQTGLMAAA-REARY 107
            S                      +  ++    +    +   ++            E ++
Sbjct: 51  CSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKF 110

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
               ++A    A  I T H    ++        +   +       +     + L   I  
Sbjct: 111 KCFLDYAIEQGADTIATGHYARKEVRNGVHYLLKGLDQNKDQSYFLYRLKPFQLERAIF- 169

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + ++R    +  + 
Sbjct: 170 PLGELEKPEVRRLAEEFKLP 189


>gi|90407904|ref|ZP_01216079.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychromonas sp. CNPT3]
 gi|90310995|gb|EAS39105.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychromonas sp. CNPT3]
          Length = 526

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+     ++  +    +++ +SGG DS  + + L   + DR       + + VD+  L
Sbjct: 213 SIIDDAIARMKEQIGDDEVILGLSGGVDSSVVAMLLQRAIGDR------LTCVFVDNGLL 266

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R +     +        R  +    V+ ++         S P+       R        E
Sbjct: 267 RLDEGDQVMEM---FAGRFGLKIIRVNAEDRFLNEMAGESDPEKKRKIIGRVFVEIFDEE 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + ++     +        +  D+ + +  P    
Sbjct: 324 SKKLENAKWLAQGTIYPDVIES---AATKNGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 381 FKDEVRKIGLELGLPY 396


>gi|7524857|ref|NP_045859.1| hypothetical protein ChvulCp100 [Chlorella vulgaris]
 gi|6176570|sp|O20163|TILS_CHLVU RecName: Full=tRNA(Ile)-lysidine synthase, chloroplastic; AltName:
           Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName:
           Full=tRNA(Ile)-lysidine synthetase
 gi|2224451|dbj|BAA57935.1| unnamed protein product [Chlorella vulgaris]
          Length = 504

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 52/192 (27%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI------KFSAI 56
           LS +++ R +  +     H+L +VSGG DS+     L + L      K+       FS  
Sbjct: 16  LSSVKTKRVYKNN-----HLLCSVSGGQDSIVSFFFLVNFLYLSKNFKLIKSKLSSFSVA 70

Query: 57  S--------------------VDHCLRET---AKDEVRYVSDV-------CSRL------ 80
           S                    ++  + +    ++ ++ +           C         
Sbjct: 71  SKSAEKKRCFDCFFSLKKNKKINALINKEKKLSRLDLVFCQHFWQTQNFFCVEFLFQLTF 130

Query: 81  --RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
              I ++ V  KN          AR  R    S   K    + I+T  T  D  E     
Sbjct: 131 FFDIPYTFVLSKNILVS---ENRARGWRKKTFSRLLKIQKLSTIVTGQTKTDTAEKSITN 187

Query: 139 SQRDYAEKGMGL 150
             R  + K   L
Sbjct: 188 LLRGTSPKSFSL 199


>gi|88813489|ref|ZP_01128724.1| GMP synthase [Nitrococcus mobilis Nb-231]
 gi|88789279|gb|EAR20411.1| GMP synthase [Nitrococcus mobilis Nb-231]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + +      + + + VD+  LR     E  
Sbjct: 221 IREEVGTDQVLLGLSGGVDSSVVAALLHQAIGE------QLTCVFVDNGLLRLN---EGA 271

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V +     + +    V+ +            P+       R        +  K      
Sbjct: 272 QVMATFARHMGVRVIHVNAEERFLTRLAGVVDPERKRKLIGRIFIDVFDEQAGKLDGVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +    + +        +   +NL +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIES---AGAKTGKARLIKSHHNVGGLPERMNLRLLEPLRSLFKDEVRCIG 388

Query: 182 LQRNIS 187
           L+  + 
Sbjct: 389 LELGLP 394


>gi|83952234|ref|ZP_00960966.1| hypothetical protein ISM_16765 [Roseovarius nubinhibens ISM]
 gi|83837240|gb|EAP76537.1| hypothetical protein ISM_16765 [Roseovarius nubinhibens ISM]
          Length = 532

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++VR  +     P  I++ +SGG DS      L  +L      +   + ++  H     A
Sbjct: 168 QAVRRILTHCDGP--IVLPLSGGRDSR---HILLELLHQGRAPE---ACVTFHHN--GYA 217

Query: 67  -KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
              E +    +C R  IAH V+ +   +        A   R   ++      +A 
Sbjct: 218 FNSEAQAARALCQRAGIAHDVLGYARPR-------LADATRAMALTGLCADEHAQ 265


>gi|329297165|ref|ZP_08254501.1| tRNA-specific 2-thiouridylase MnmA [Plautia stali symbiont]
          Length = 370

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAADDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L I    +++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A  + A  I T H     D    +  +R      ++   L  +    +         P  
Sbjct: 117 ADDLGADYIATGHYVRRADVDGTSQLLRGLDGNKDQSYFLYTLSHQQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
           +  + ++R    Q ++
Sbjct: 173 KLEKPEVRRIAEQLDL 188


>gi|325960077|ref|YP_004291543.1| GMP synthase, large subunit [Methanobacterium sp. AL-21]
 gi|325331509|gb|ADZ10571.1| GMP synthase, large subunit [Methanobacterium sp. AL-21]
          Length = 308

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 68/184 (36%), Gaps = 30/184 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +     ++A+SGG DS        SVL+  + G+    A+ VDH  LRE   D   
Sbjct: 15  IKKTIGDGKAIIALSGGVDSSV-----ASVLTSTAIGE-NLVAVFVDHGLLREGESD--- 65

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKTINATLIM 123
           YV++    RL +     S +      G+     E R         +    A+ + A  ++
Sbjct: 66  YVNNTFKDRLNLRTVDASEEFLSRLDGVYDP-EEKRKIIGEVFIRVFERVAEEVGAEFLV 124

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
                 D +E+           +G   S     + + L L I  P     ++++R    +
Sbjct: 125 QGTIAPDWIES-----------EGQIKSHHNIALPHGLVLNIVEPIRELYKDEVRVVGTE 173

Query: 184 RNIS 187
             + 
Sbjct: 174 LGLP 177


>gi|83951569|ref|ZP_00960301.1| ExsB [Roseovarius nubinhibens ISM]
 gi|83836575|gb|EAP75872.1| ExsB [Roseovarius nubinhibens ISM]
          Length = 233

 Score = 43.4 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 36/188 (19%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS+ L    H V ++++  ++    +S D+  R   + E+ + +    RL +   
Sbjct: 7   CSGGLDSVSLA---HKVAAEQTLTRL----VSFDYGQRH--RKELDFAARAADRLGVPFH 57

Query: 86  VVSWKN-----------------SKPQTGLMAAA-----REAR-YALISEHAKTINATLI 122
           ++  +                      T    AA     R A   ++    A       +
Sbjct: 58  LIDMRGIGAVLTGSALTDDVPVPDGHYTEASMAATVVPNRNAIMLSVAFGLATAQGDEAV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            TA    D          R    K            Y  N+++  PF+   +  I +   
Sbjct: 118 ATAVHGGDH---FIYPDCRPGFAKSFQAMQNHALDGYA-NVFLYTPFIDAPKSAIVTEGA 173

Query: 183 QRNISWCE 190
           + +  + +
Sbjct: 174 RHHTPFAD 181


>gi|329849969|ref|ZP_08264815.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Asticcacaulis biprosthecum C19]
 gi|328841880|gb|EGF91450.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Asticcacaulis biprosthecum C19]
          Length = 395

 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 76/220 (34%), Gaps = 34/220 (15%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHC 61
            I + R  V  L   A I+ A+SGG DS         V +  +    +   +++   DH 
Sbjct: 17  AIAATRRSV-GLPAGARIVAAMSGGVDST-------VVAALLAAAGYEVIGVTLQLYDHG 68

Query: 62  --LRET----AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR------------ 103
             L++T    A  ++        ++ I H V+ +++      +   A             
Sbjct: 69  AALKKTGACCAGQDIHDARMASEKIGIPHYVLDYESRFRDQVIEEFADSYLRGETPVPCI 128

Query: 104 ----EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
                 ++  + + A+ + A  + T H  +   E   +  +R   +       +  T   
Sbjct: 129 RCNQSVKFNDLLQVARDLGAEAMATGHYVERSDEDGVVSLRRAADQSRDQSYFLFAT-TR 187

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
           +   ++  P     +  +R   +Q  +   + P + D  F
Sbjct: 188 EQLDYLRFPLAGIPKPQVRDIAVQLGLKVAQKPDSQDICF 227


>gi|297545060|ref|YP_003677362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842835|gb|ADH61351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 364

 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 75/245 (30%), Gaps = 64/245 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L     +          I V   + +   +E   V  
Sbjct: 1   MKKNNRVVVGMSGGVDSSVSAYLLKEQGYE---------VIGVTMQIWQDKDEEAVRVEG 51

Query: 74  -----------SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARY 107
                        V +++ I + V+++K+   +                    A  +  Y
Sbjct: 52  GCCSLAAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNK--Y 109

Query: 108 ALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMG-LSGMCDTILY 159
               E  K    I+A  + T H      D++     ++   D ++     L  +  T L 
Sbjct: 110 IKFEELLKRAWMIDAYYVATGHYAIKEYDEERRRYLLKKSVDTSKDQTYVLYNLTQTQLE 169

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPSNTDDRFERVRVRRFV 208
                I  P  + +++++R       +            +  D  N   +F R   +  +
Sbjct: 170 ----HILFPLGKYKKDEVRKLAKDLGLPVASKPDSQEICFVTD--NDYGKFIRENAKEEI 223

Query: 209 RDIDL 213
           +  + 
Sbjct: 224 KPGEF 228


>gi|209694327|ref|YP_002262255.1| GMP synthase [Aliivibrio salmonicida LFI1238]
 gi|226738377|sp|B6EGZ6|GUAA_ALISL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|208008278|emb|CAQ78423.1| GMP synthase [glutamine-hydrolyzing] [Aliivibrio salmonicida
           LFI1238]
          Length = 517

 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + +  H  + D      K + + VD+  L
Sbjct: 204 SIIEDAIARIKEQVGDDEVILGLSGGVDSSVVAMLAHRAIGD------KLTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +       +    V  +          +  EA+  +I           
Sbjct: 258 RLN---EAEQVMEMFSEGFGLKIIHVEAEERFLSALSGESDPEAKRKIIGHVFVDIFDEE 314

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLSNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|163758298|ref|ZP_02165386.1| putative LPS biosynthesis protein WbpG [Hoeflea phototrophica
           DFL-43]
 gi|162284587|gb|EDQ34870.1| putative LPS biosynthesis protein WbpG [Hoeflea phototrophica
           DFL-43]
          Length = 360

 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 20/116 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DS  +   +  +        ++  A+ +D+     ++  V  +    + L I
Sbjct: 59  VIGVSGGVDSTYVAWLVKKL-------GLRPLAVHLDNGW--NSELAVANIEKTLNTLGI 109

Query: 83  AH--SVVSWKNSKPQTGLMAAAR---------EARYALISEHAKTINATLIMTAHT 127
                V++W+  +        A           A +AL+ E A       ++T   
Sbjct: 110 DLYTHVLNWEEFRNLQSSFLKASTPDGEVPTDHAIFALLYELAAKHGLKHVITGTN 165


>gi|294675227|ref|YP_003575843.1| protein ExsB [Prevotella ruminicola 23]
 gi|294471644|gb|ADE81033.1| protein ExsB [Prevotella ruminicola 23]
          Length = 217

 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 56/193 (29%), Gaps = 40/193 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              I++ +SGG DS  LL          +       AIS D+        E+ +    C 
Sbjct: 2   KDSIII-LSGGMDSTTLLY---DYQERIAL------AISFDYG-SNHNAKEIPFAKYHCE 50

Query: 79  RLRIAHSVVSWKNSKPQ-----TGLMAAAREARY------------------ALISEHAK 115
           +L I H V+  K               A  E  Y                  A+ +  A+
Sbjct: 51  QLGIKHLVIPLKFMGEYFRSSLLSGDEAIPEGHYASENMKSTVVPFRNGIMLAVATGMAE 110

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           + +   +M A+   D          R         +    T      + +  P+    + 
Sbjct: 111 SNDLQYVMMANHGGDHT---IYPDCRPEFVDAFDKTAQAGTF---NGVRLLSPYCNMTKG 164

Query: 176 DIRSFLLQRNISW 188
            I +   +  I +
Sbjct: 165 QIAARGKELGIDY 177


>gi|259416977|ref|ZP_05740897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter sp. TrichCH4B]
 gi|259348416|gb|EEW60193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Silicibacter sp. TrichCH4B]
          Length = 381

 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 65/227 (28%), Gaps = 55/227 (24%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------ 65
           F +S      ++VA+SGG DS  +   L     D     ++      DH           
Sbjct: 14  FAKS-PAETRVVVAMSGGVDSSVVAAYLAEQGYDVVGVTLQLY----DHG--AALAKKGA 66

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARY 107
             A  ++     V       H V+ ++N      +   A                   ++
Sbjct: 67  CCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKF 126

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             + E AK + A  + T H             QR   E G  L    +    D + ++  
Sbjct: 127 KDLLETAKDLEADCMATGH-----------YIQRKMGEHGPELHS-AEDANRDQSYFLFS 174

Query: 168 -----------PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                      P      ++  R    Q  +S  + P + D  F   
Sbjct: 175 TTPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPN 221


>gi|226307235|ref|YP_002767195.1| sulfate adenylyltransferase subunit 2 [Rhodococcus erythropolis
           PR4]
 gi|226186352|dbj|BAH34456.1| sulfate adenylyltransferase subunit 2 [Rhodococcus erythropolis
           PR4]
          Length = 311

 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS  LL      +       + F+ + VD  H L+E        V+    RL +A
Sbjct: 45  FSGGKDSTVLLHL---AIKAFWPAPLPFTLLHVDTGHNLQEVLDFRDHVVAKYNLRLHVA 101


>gi|170061200|ref|XP_001866133.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|226711441|sp|B0X911|CTU2_CULQU RecName: Full=Cytoplasmic tRNA 2-thiolation protein 2
 gi|167879534|gb|EDS42917.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 425

 Score = 43.4 bits (101), Expect = 0.072,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 65/216 (30%), Gaps = 46/216 (21%)

Query: 18  YPAHILVAVSGGSDS---MGLLIALHSVLSDRSFGKIKFSAISV----DHCLRETAKDE- 69
             + +LV  SG   S   + +L  +   L   SF K++   + V    DH  RE  +   
Sbjct: 80  RGSRVLVVFSG---SAENVVMLDMIRYGLQQESFKKLRIEPVVVFVSEDHVGREDGERVG 136

Query: 70  -----VRYVSDVCSR-----LRIAHSVVSWKNSKPQTGLMAAAR---------------- 103
                VR +     R     +     V    +   +      AR                
Sbjct: 137 VVQEKVRILKQFEFRSYFSVIGAKECVAVEDSDLLERYSEERARFNKILSGFKSATSKQD 196

Query: 104 ---EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
              + R   +   AK ++   +  +    D  +T+                  CD    D
Sbjct: 197 FIVQNRKQTLKVIAKRLDCPYVFLSDIGLDLAKTLLSNVALGRGRSLALDIAFCDD--RD 254

Query: 161 LNLWISRPFLRCRREDIRSFLLQ--RNISWC--EDP 192
               I RP      ++I ++L      +S+   EDP
Sbjct: 255 EQHKIIRPMRDLNPDEIENYLKHADNELSYITLEDP 290


>gi|315645200|ref|ZP_07898326.1| GMP synthase, large subunit [Paenibacillus vortex V453]
 gi|315279621|gb|EFU42926.1| GMP synthase, large subunit [Paenibacillus vortex V453]
          Length = 512

 Score = 43.4 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R +V    +L A+SGG DS  + + +H  + D      + + + +DH L
Sbjct: 211 IREVVGEQKVLCALSGGVDSSVVAMLIHRAIGD------QLTCMFIDHGL 254


>gi|307243659|ref|ZP_07525800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492969|gb|EFM64981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 350

 Score = 43.4 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 25/125 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKDEVRYVSDVC 77
             +L+ +SGG DS      L     +     +       D     ++T+ ++ R V   C
Sbjct: 2   KRVLLGMSGGVDSSVAAFLLQKEGYEVVGATMALW----DFKDGNKDTSIEDARVV---C 54

Query: 78  SRLRIAHSVVSWKN---------------SKPQTGLMAAARE-ARYALISEHAKTINATL 121
           ++L+I H V+ ++                +           +  ++ L+ + A+ +    
Sbjct: 55  NKLKIDHHVLDFREDFKDLVVDNFIDEYFAGKTPNPCVFCNKTIKFGLLFDKARELGCDY 114

Query: 122 IMTAH 126
           + T H
Sbjct: 115 VATGH 119


>gi|148238786|ref|YP_001224173.1| PP family ATPase [Synechococcus sp. WH 7803]
 gi|147847325|emb|CAK22876.1| ATP-utilizing enzyme of the PP-loop superfamily [Synechococcus sp.
           WH 7803]
          Length = 283

 Score = 43.4 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 58/194 (29%), Gaps = 40/194 (20%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E++R  +R+      + VA SGG DS  +       L D +F      A++    +  +
Sbjct: 20  LEALRGLLRAA---GRVCVAYSGGVDSTLVAAIACEQLDDHAF------AVT---GVSPS 67

Query: 66  AK----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA---AAREARYALISEHAKTIN 118
                 +E R  +   +   +        +    +       A +   +  + + A+  +
Sbjct: 68  LAPHLLEEARLQARWLAIRHLEVETRELDDPDYSSNPTDRCFACKRELHHHLKDIARAAD 127

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRED 176
             L++     DD                   L      I       +  P   L+  +  
Sbjct: 128 GALVVDGVNLDD-------------------LGDHRPGIEAARQAGVRSPLAELQIDKAT 168

Query: 177 IRSFLLQRNISWCE 190
           IR         W +
Sbjct: 169 IRRLSKALGFPWWD 182


>gi|86138410|ref|ZP_01056984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. MED193]
 gi|85824935|gb|EAQ45136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. MED193]
          Length = 381

 Score = 43.4 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 62/218 (28%), Gaps = 52/218 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PAETRVVVAMSGGVDSSVVAAYLADQGYDVIGVTLQLY----DHG--AALAKKGACCAGI 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V       H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            A+ + A  + T H             QR   + G  L    D          +   +  
Sbjct: 132 TARDLEADCMATGH-----------YIQRKMGDNGAELHSAEDANRDQSYFLFSTTPEQL 180

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
            ++  P      ++  R    Q  ++  + P + D  F
Sbjct: 181 DYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICF 218


>gi|317011534|gb|ADU85281.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori
           SouthAfrica7]
          Length = 342

 Score = 43.4 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 57/210 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++         A  AA E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDAFIAAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              I T H       DQ+        R+  +K    S     + +++   +  P     +
Sbjct: 110 CEKIATGHYARIKEIDQV-----SYIREALDKTKDQSYFLYALEHEVIAKLVFPLGDLLK 164

Query: 175 EDI--------------RSFLLQRNISWCE 190
           +DI               ++   + I + E
Sbjct: 165 KDIKPLALNAMPFLGTLETYKESQEICFVE 194


>gi|256380515|ref|YP_003104175.1| GMP synthase [Actinosynnema mirum DSM 43827]
 gi|255924818|gb|ACU40329.1| GMP synthase, large subunit [Actinosynnema mirum DSM 43827]
          Length = 519

 Score = 43.4 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 26/197 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +R+ V     +  +SGG DS     A+ + L  R+ G  + + + VDH  L
Sbjct: 204 SIVEEQVERIRAQVGEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLL 257

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARY---ALI 110
           R   + +V    D  +   +    V  +          + P+       RE         
Sbjct: 258 RAGERTQVE--RDFVASTGVNLVTVDARQRFLDALAGVTDPEEKRKIIGREFIRVFEQAE 315

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            +     +   ++    + D +E+             +        +  DL   +  P  
Sbjct: 316 RDLKAEGDYGFLVQGTLYPDVVES-----GGGAGAANIKSHHNVGGLPDDLQFELVEPLR 370

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  + 
Sbjct: 371 ALFKDEVRKVGAELGLP 387


>gi|188533182|ref|YP_001906979.1| GMP synthase [Erwinia tasmaniensis Et1/99]
 gi|188028224|emb|CAO96082.1| GMP synthase [glutamine-hydrolyzing] [Erwinia tasmaniensis Et1/99]
          Length = 526

 Score = 43.4 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  V    +++ +SGG DS    + LH  + DR       + + VD+  L
Sbjct: 213 KIIEDAVERLREQVGDDKVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +       +    V+ +N          +P+       R        E
Sbjct: 267 RLN---EAEQVMEMFGDHFGLNIIHVAAENRFLDALAGTDEPEAKRKIIGRVFVEVFDEE 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 324 ATKLNDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  +  
Sbjct: 381 FKDEVRKIGLELGLPH 396


>gi|218896373|ref|YP_002444784.1| exsB protein [Bacillus cereus G9842]
 gi|254764303|sp|B7IN35|QUEC_BACC2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|218543833|gb|ACK96227.1| exsB protein [Bacillus cereus G9842]
          Length = 220

 Score = 43.4 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ ++  R   K E+   + +   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEIDCAAKIAKEL 55

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 56 GIKHTVLD 63


>gi|167807|gb|AAA33213.1| GMP synthetase [Dictyostelium discoideum]
          Length = 718

 Score = 43.4 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++S+V    +LV VSGG DS        + L  ++ G     A+ +D+   R   KDE 
Sbjct: 260 YIKSIVSNKKVLVLVSGGVDSTV-----CAALISKAIGPENVIALHIDNGFMR---KDES 311

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V    S L +   VV 
Sbjct: 312 LNVEKALSVLGLHLIVVD 329


>gi|21673016|ref|NP_661081.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Chlorobium tepidum TLS]
 gi|44887968|sp|Q8KFZ5|GUAA_CHLTE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21646081|gb|AAM71423.1| GMP synthase [Chlorobium tepidum TLS]
          Length = 516

 Score = 43.4 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 69/186 (37%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +   + ++  +SGG DS    + +   + D+         + VD+  LR   KDE  
Sbjct: 217 IKRVAGDSTVVCGISGGVDSTVAAVLVSKAIGDK------LHCVFVDNGLLR---KDEAV 267

Query: 72  YVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            V +    L +  S+V   +      K         +      I    K I+    +   
Sbjct: 268 KVMEFLKPLGLNISLVDASDLFLGRLKGVASPEKKRKIIGRTFIQVFEKNIHDEKFLVQG 327

Query: 127 TF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           T   D +E+V ++   +  +    + G+       + L +  P     ++++R+   +  
Sbjct: 328 TLYPDVIESVSVKGPSETIKSHHNVGGL----PKRMKLKLIEPLRELFKDEVRAVGRELG 383

Query: 186 ISWCED 191
           I+  ED
Sbjct: 384 IA--ED 387


>gi|88807867|ref|ZP_01123378.1| hypothetical protein WH7805_06891 [Synechococcus sp. WH 7805]
 gi|88787906|gb|EAR19062.1| hypothetical protein WH7805_06891 [Synechococcus sp. WH 7805]
          Length = 299

 Score = 43.4 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 57/194 (29%), Gaps = 40/194 (20%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E++R  +RS      + VA SGG DS  +       L D +F      A++    +  +
Sbjct: 20  LEALRCLLRSA---GTVCVAYSGGVDSTLVAAIACEQLGDHAF------AVT---GVSPS 67

Query: 66  AK----DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA---AAREARYALISEHAKTIN 118
                 +E R  +       +        +    +       A ++  +  + + AK  +
Sbjct: 68  LAPHLLEEARLQARWLEIRHLEVETSELNDPNYSSNPTDRCFACKQELHLHLKDIAKAAD 127

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRED 176
              ++     DD                   L      I       +  P   L+  +  
Sbjct: 128 GAQVLDGVNLDD-------------------LGDHRPGIEAARQAGVRSPLAELQIDKAT 168

Query: 177 IRSFLLQRNISWCE 190
           IR         W +
Sbjct: 169 IRRLSKALGFPWWD 182


>gi|167036708|ref|YP_001664286.1| tRNA-specific 2-thiouridylase MnmA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115132|ref|YP_004185291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166855542|gb|ABY93950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928223|gb|ADV78908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 376

 Score = 43.4 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 80/260 (30%), Gaps = 67/260 (25%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M  S      FF++       ++V +SGG DS      L             F  I V  
Sbjct: 1   MRESTRRLENFFMK---KNNRVVVGMSGGVDSSVSAYLLKEQG---------FDVIGVTM 48

Query: 61  CLRETAKDEVRYV-------------SDVCSRLRIAHSVVSWKNSKPQT----------- 96
            + +   +E   V               V +++ I + V+++K+   +            
Sbjct: 49  QIWQDKDEEAVRVEGGCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLK 108

Query: 97  ----GLMAAAREARYALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAE 145
                   A  +  Y    E  K    I+A  + T H      D++     ++   D ++
Sbjct: 109 GRTPNPCIACNK--YIKFEELLKRAWMIDAYYVATGHYAIKEYDEERGRYLLKKSVDTSK 166

Query: 146 KGMG-LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPS 193
                L  +  T L      I  P  + +++++R       +            +  D  
Sbjct: 167 DQTYVLYNLTQTQLE----HILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTD-- 220

Query: 194 NTDDRFERVRVRRFVRDIDL 213
           N   +F R   +  ++  + 
Sbjct: 221 NDYGKFIRENAKEEIKPGEF 240


>gi|66812710|ref|XP_640534.1| GMP synthetase [Dictyostelium discoideum AX4]
 gi|161783815|sp|P32073|GUAA_DICDI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|60468534|gb|EAL66537.1| GMP synthetase [Dictyostelium discoideum AX4]
          Length = 718

 Score = 43.4 bits (101), Expect = 0.075,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++S+V    +LV VSGG DS        + L  ++ G     A+ +D+   R   KDE 
Sbjct: 260 YIKSIVSNKKVLVLVSGGVDSTV-----CAALISKAIGPENVIALHIDNGFMR---KDES 311

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V    S L +   VV 
Sbjct: 312 LNVEKALSVLGLHLIVVD 329


>gi|224540371|ref|ZP_03680910.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518022|gb|EEF87127.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 353

 Score = 43.4 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 49/188 (26%), Gaps = 39/188 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  ++  L       S   IK      D+      +D     + +  R  +   
Sbjct: 7   LSGGVDSSVVVHLLCEQGYRPSLFYIKIGMDGTDYMDCSAEEDW-EMATAIAHRYGLPLE 65

Query: 86  VVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKTIN--ATLIMTAH---- 126
           +V  +    +     A  + R  L                  + +      I T H    
Sbjct: 66  MVDLQKEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFGCFEQKVGKEFDFIATGHYATT 125

Query: 127 -TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLRCRREDIRS 179
              D                 G+ +  + D   +   +       +  P     ++++R 
Sbjct: 126 VHKD------------GKVWLGIAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEVRD 173

Query: 180 FLLQRNIS 187
                 + 
Sbjct: 174 IARNAGLP 181


>gi|300722900|ref|YP_003712196.1| GMP synthetase [Xenorhabdus nematophila ATCC 19061]
 gi|297629413|emb|CBJ90014.1| GMP synthetase (glutamine aminotransferase) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 65/217 (29%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS---------------- 47
           S I+ +   +R+ +    +++A+SGG DS    + L+  +  R                 
Sbjct: 212 SIIDDIVERLRAQIGDDQVILALSGGVDSSVTALLLNRAIGKRLTCVFVDNGLLRLNEAD 271

Query: 48  ------FGKIKFSAISVDHCLRETAKDEVRYVSDV-------CSRLRIAHSVVSWKNSKP 94
                  GK   + I V        K E R++S +         R  I H  +   + + 
Sbjct: 272 QVMEMFEGKFDLNIIHV--------KAEDRFLSALAGIDEPEAKRKTIGHVFIDVFDEEA 323

Query: 95  QTGLM---AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
                    A       +I   A       ++ +H                         
Sbjct: 324 SKQTQVKWLAQGTIYPDVIESAASATGNAHVIKSHH------------------------ 359

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
                +  D+ L +  P     ++++R   L+  + +
Sbjct: 360 -NVGGLPEDMKLGLVEPLKELFKDEVRRIGLELGLPY 395


>gi|205815331|sp|B0K584|MNMA1_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
          Length = 364

 Score = 43.4 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 122/380 (32%), Gaps = 85/380 (22%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L             F  I V   + +   +E   V  
Sbjct: 1   MKKNNRVVVGMSGGVDSSVSAYLLKEQG---------FDVIGVTMQIWQDKDEEAVRVEG 51

Query: 74  -----------SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARY 107
                        V +++ I + V+++K+   +                    A  +  Y
Sbjct: 52  GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNK--Y 109

Query: 108 ALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMG-LSGMCDTILY 159
               E  K    I+A  + T H      D++     ++   D ++     L  +  T L 
Sbjct: 110 IKFEELLKRAWMIDAYYVATGHYAVKEYDEERGRYLLKKSVDTSKDQTYVLYNLTQTQLE 169

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPSNTDDRFERVRVRRFV 208
                I  P  + +++++R       +            +  D  N   +F R   +  +
Sbjct: 170 ----HILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTD--NDYGKFIRENAKEEI 223

Query: 209 RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAISQDI--LNIDSTLLFY 266
           +  +          F+D R +       +I   +       I++ + +  ++ID+     
Sbjct: 224 KPGE----------FRDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVV 273

Query: 267 LLRVSAAICGGQI-----SLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRANFLWITRA 321
           +L     + G ++     +      +ER M  +K+  R        VI    +     + 
Sbjct: 274 VLGYGDEVFGDELISYNNNFISIDKLEREM-RVKAKIRYNAKEQDAVIRPLEDGKVFVK- 331

Query: 322 VRNLPTLILYPEETTV-WDG 340
             + P   + P ++ V +DG
Sbjct: 332 -FDNPQRAITPGQSVVFYDG 350


>gi|195118114|ref|XP_002003585.1| GI17996 [Drosophila mojavensis]
 gi|193914160|gb|EDW13027.1| GI17996 [Drosophila mojavensis]
          Length = 694

 Score = 43.4 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ VSGG DS      L      ++    +  A+ VD+   R+ 
Sbjct: 216 EECIRYIREKVGNNKVLLLVSGGVDSSVCAALL-----RKALHPNQIIAVHVDNGFMRKN 270

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
             + V  V  +   + I   V  
Sbjct: 271 ESENV--VRSL-RDIGIDLIVRK 290


>gi|24216919|ref|NP_714400.1| sulfate adenylyltransferase subunit 2 [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45659190|ref|YP_003276.1| sulfate adenylyltransferase subunit 2 [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|24198306|gb|AAN51418.1| sulfate adenylyltransferase subunit 2 [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45602436|gb|AAS71913.1| sulfate adenylyltransferase subunit 2 [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 305

 Score = 43.4 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 8/87 (9%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETA 66
           +R        PA +    SGG DS+ L+      L     GK  F  + +D  H  +E  
Sbjct: 24  LRETASQFERPALL---FSGGKDSITLVHL---ALKAFRPGKFPFPLVHIDTGHNFQEAL 77

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK 93
                  S +  +L I +   S    K
Sbjct: 78  DFRDELASKIGEKLIIRYVQDSIDQGK 104


>gi|25027171|ref|NP_737225.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium efficiens YS-314]
 gi|44887965|sp|Q8FRZ3|GUAA_COREF RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|23492452|dbj|BAC17425.1| GMP synthase [Corynebacterium efficiens YS-314]
          Length = 523

 Score = 43.4 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 29/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             +E +R     +      +  +SGG DS     A+ + L  R+ G  + + + VDH  L
Sbjct: 207 ELVEKIR---EQVGPEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLL 257

Query: 63  RETAKDEVR--YVSDVCSRL-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHA- 114
           R   +++V   +V+   ++L     R A        ++P+    A   E   +     A 
Sbjct: 258 RAGEREQVEKDFVAATGAKLVTVDERKAFLDKLAGVTEPEAKRKAIGAEFIRSFERAVAG 317

Query: 115 ------KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
                 +      ++    + D +E+             +        +  D+   +  P
Sbjct: 318 VLEDSPEGSTVDFLVQGTLYPDVVES-----GGGAGTANIKSHHNVGGLPDDVEFELVEP 372

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R+   +  + 
Sbjct: 373 LRLLFKDEVRAVGRELGLP 391


>gi|332140458|ref|YP_004426196.1| GMP synthase [Alteromonas macleodii str. 'Deep ecotype']
 gi|226738378|sp|B4RV80|GUAA_ALTMD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|327550480|gb|AEA97198.1| GMP synthase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 525

 Score = 43.4 bits (101), Expect = 0.076,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 59/187 (31%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           ++  V    +++ +SGG DS    + LH  +          + + VD+  LR   A   +
Sbjct: 221 IKEKVGDERVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLNEADQVM 274

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
                      +    V  +            P+    A   E       E +K  NA  
Sbjct: 275 EM---FGDHFGLNIIRVDAEGRFLDRLKGIEDPELKRKAIGNEFVRVFDEEASKLENAKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+             +        +  D+ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPEDMELGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|229493125|ref|ZP_04386917.1| sulfate adenylyltransferase subunit 2 [Rhodococcus erythropolis
           SK121]
 gi|229319856|gb|EEN85685.1| sulfate adenylyltransferase subunit 2 [Rhodococcus erythropolis
           SK121]
          Length = 317

 Score = 43.4 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS  LL      +       + F+ + VD  H L+E        V+    RL +A
Sbjct: 51  FSGGKDSTVLLHL---AIKAFWPAPLPFTLLHVDTGHNLQEVLDFRDHVVAKYNLRLHVA 107


>gi|118593646|ref|ZP_01551022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stappia aggregata IAM 12614]
 gi|118433757|gb|EAV40418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Stappia aggregata IAM 12614]
          Length = 392

 Score = 43.4 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 26/132 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC------LRETAKDEV 70
                ++VA+SGG DS  +   + +   D     ++      DH           A  ++
Sbjct: 11  PEDTRVVVAMSGGVDSSVVAALMKAEGYDVIGVTLQLY----DHGAAVSKAKSCCAGVDI 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHA 114
                    + I H V+ +++   +  +   A                   ++  + + A
Sbjct: 67  HDARRAAETIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDLLKTA 126

Query: 115 KTINATLIMTAH 126
           K + A  + T H
Sbjct: 127 KDLGADALATGH 138


>gi|52352404|gb|AAU43693.1| argininosuccinate synthase [uncultured archaeon GZfos26D8]
          Length = 388

 Score = 43.4 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 52/189 (27%)

Query: 20  AHILVAVSGGSD-SMG--LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             +++A SGG D S+   LL           +G  +  A++VD   +    D+++   + 
Sbjct: 2   KKVVLAYSGGLDTSVCIPLL--------KEHYGYDEVIAVTVDVG-QPG--DDIKEAKER 50

Query: 77  CSRLRIAHSVVSWKNS----------KPQTGLM------AAAREARYALISEHAKTINAT 120
            ++L  ++  +  K            K            A AR      + E A+   A 
Sbjct: 51  GAKLSDSYREIDAKEEFVRDYIFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREEKAD 110

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDI 177
               AH                    G G   +  D +    +L +  P   L   RE+ 
Sbjct: 111 --AVAH-----------------GCTGKGNDQLRFDAVFRTTDLDVVAPMRELSLTREEE 151

Query: 178 RSFLLQRNI 186
           R +  +  I
Sbjct: 152 RKYAAEHGI 160


>gi|38233202|ref|NP_938969.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|44887924|sp|P60499|GUAA_CORDI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|38199461|emb|CAE49112.1| GMP synthase [glutamine-hydrolysing] [Corynebacterium diphtheriae]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR-- 71
            +      +  +SGG DS     A+ + L  R+ G  + + + VDH L R   +++V+  
Sbjct: 217 QVGPEGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGEREQVQTD 270

Query: 72  YVSDVCSRL----------RIAHSVVSWKNSKPQTGLMAAAREARY--ALISEHAKTINA 119
           +V+   ++L               V   +  +   G        R    ++ +  +    
Sbjct: 271 FVAATGAKLVTVDEREAFLNKLAGVTEPEAKRKAIGAEFIRSFERAVAGILDDAPEGSTV 330

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  D+   +  P     ++++R+
Sbjct: 331 DFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDVEFQLVEPLRLLFKDEVRA 385

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 386 VGRELGLP 393


>gi|225020538|ref|ZP_03709730.1| hypothetical protein CORMATOL_00545 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946668|gb|EEG27877.1| hypothetical protein CORMATOL_00545 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 517

 Score = 43.4 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 69/203 (33%), Gaps = 35/203 (17%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE+VR     +      +  +SGG DS     A+ + L  R+ G  + + + VDH L 
Sbjct: 199 ELIETVR---EQVGDTGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLL 249

Query: 63  RETAKDEVR--YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI--SEHAKTIN 118
           R   +++V+  +V    ++L      V  + +           EA+   I          
Sbjct: 250 RAGEREQVQTDFVKATGAKL----VTVDEREAFLSKLAGVTDPEAKRKAIGNEFIRSFER 305

Query: 119 ATLIMTAHTFDDQLET-----VYMRSQ---------RDYAEKGMGLSGMCDTILYDLNLW 164
           A  ++ A   D+  +T       ++                  +        +  DL   
Sbjct: 306 AVGLVLA---DEPADTVGAVEFLVQGTLYPDVVESGGGAGTANIKSHHNVGGLPEDLEFQ 362

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
           +  P     ++++R+   +  + 
Sbjct: 363 LVEPLRLLFKDEVRAVGRELGLP 385


>gi|153813145|ref|ZP_01965813.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174]
 gi|149830800|gb|EDM85890.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174]
          Length = 375

 Score = 43.4 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 58/192 (30%), Gaps = 38/192 (19%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-----------SAISVDHCLRETAKDEVR 71
           ++A+SGG DS      +     D +   +K             A         +  ++ R
Sbjct: 16  IIAMSGGVDSSVAAYLMVKEGYDCAGATLKLYDNPQCSFPGHRACC-----TPSDTEDAR 70

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAK 115
            V    +RL + + V    +    + +   A                R  +++ + + A+
Sbjct: 71  SV---AARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKAR 127

Query: 116 TINATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +    I + H    +   ET     ++           +       L   +  P     
Sbjct: 128 ELGCEYIASGHYARREQDPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLF-PLGSYT 186

Query: 174 REDIRSFLLQRN 185
           +++IR    ++ 
Sbjct: 187 KKEIRHIAQKQG 198


>gi|157157765|ref|YP_001463830.1| GMP synthase [Escherichia coli E24377A]
 gi|300927130|ref|ZP_07142878.1| GMP synthase protein [Escherichia coli MS 182-1]
 gi|301330403|ref|ZP_07223044.1| GMP synthase protein [Escherichia coli MS 78-1]
 gi|226738440|sp|A7ZPV1|GUAA_ECO24 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157079795|gb|ABV19503.1| GMP synthase (glutamine-hydrolyzing) [Escherichia coli E24377A]
 gi|300416900|gb|EFK00211.1| GMP synthase protein [Escherichia coli MS 182-1]
 gi|300843613|gb|EFK71373.1| GMP synthase protein [Escherichia coli MS 78-1]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.077,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R +   E   V D+           +            +    A      R        E
Sbjct: 266 RLS---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|319900441|ref|YP_004160169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
 gi|319415472|gb|ADV42583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides helcogenes P 36-108]
          Length = 353

 Score = 43.4 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 36/192 (18%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--- 72
           +    H+L+ +SGG+DS    + L     + +    +F            A     Y   
Sbjct: 1   MKSKEHVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY----------EADGGTEYLED 50

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAKT 116
              + +RL I H     + +  +  +        A R          E ++AL+++ A  
Sbjct: 51  ARALAARLGIGHITYDAREAFRERVIRYFIDEYLAGRTPVPCTVCNNELKWALLAKIADE 110

Query: 117 INATLIMTAHTFDDQLET---VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
                + T H     L+        +     ++   L G+   IL  +      P     
Sbjct: 111 KGIYWVSTGHYVRKVLQEGKYYIAPAADRDKDQSFFLWGLKQDILRRM----LLPMGDII 166

Query: 174 REDIRSFLLQRN 185
           + + R++   R 
Sbjct: 167 KSEARAYAAARG 178


>gi|317473659|ref|ZP_07932948.1| ExsB protein [Anaerostipes sp. 3_2_56FAA]
 gi|316898949|gb|EFV20974.1| ExsB protein [Anaerostipes sp. 3_2_56FAA]
          Length = 181

 Score = 43.4 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +  P   +V  SGG DS   L        +         A+S D+  ++ + DE+    +
Sbjct: 1  MSKPTKAVVVFSGGQDSTTCLFWAKKKYEE-------VIALSFDYG-QKHS-DELICAKE 51

Query: 76 VCSRLRIAHSVVS 88
          +C +  + H ++ 
Sbjct: 52 ICKKYGVEHYILD 64


>gi|260222085|emb|CBA31300.1| hypothetical protein Csp_F36830 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 647

 Score = 43.4 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 19/117 (16%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  ++        D     I            E   D++ Y   V   L +   
Sbjct: 264 LSGGLDSSAVVAFAREQNPDIQCYSIDVQGA-----QDEGFADDLPYARRVAQHLGVPLH 318

Query: 86  VVSWKNSKPQTGLMA------------AAREARYALISEHAKTINATLIMTAHTFDD 130
           VV    +     L A            AA   RY  IS  A+     ++++    DD
Sbjct: 319 VVQVDPASMAQDLQAMVIQLDEPLADPAALNVRY--ISALARQQGIKVLLSGTAGDD 373


>gi|259907729|ref|YP_002648085.1| GMP synthase [Erwinia pyrifoliae Ep1/96]
 gi|224963351|emb|CAX54836.1| GMP synthase [glutamine-hydrolyzing] [Erwinia pyrifoliae Ep1/96]
          Length = 526

 Score = 43.4 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE     +R  V    +++ +SGG DS    + LH  + DR       + + VD+ L 
Sbjct: 213 KIIEDAVARLREQVGDDKVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +       +    V+ +N          +P+       R        +
Sbjct: 267 RLN---EAEQVMEMFGDHFGLNIIHVAAENRFLDALAGTDEPEAKRKIIGRVFVEVFDEK 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 324 ATKLSDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  +  
Sbjct: 381 FKDEVRKIGLELGLPH 396


>gi|167846402|ref|ZP_02471910.1| tRNA(Ile)-lysidine synthetase [Burkholderia pseudomallei B7210]
          Length = 304

 Score = 43.4 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 14/137 (10%)

Query: 188 WCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDL---RVKVNNAVAMLIPKYLTV 244
           W +D SNTD R+ R  +R  V    L AL      F+D      +   A   L+     +
Sbjct: 3   WIDDESNTDTRYARNALRVDV----LPALAPHFPGFRDALARTAQHAAAAQRLLDDLAAI 58

Query: 245 HMRSIIAISQDILNIDSTLL------FYLLRVSAAICG-GQISLPGYRSMERVMLFLKSG 297
            +R++      +L+ D+ +         LLR      G    S      M + +   +  
Sbjct: 59  DLRAVARADVRVLSRDALVALDDERGANLLRYWMRSLGLPGASAARLAEMVKQLRAARDA 118

Query: 298 KRGCVSIGRVVIDRRAN 314
               V      +    +
Sbjct: 119 HALRVDHAGWRLRLYRD 135


>gi|56412608|ref|YP_149683.1| GMP synthase [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|62181078|ref|YP_217495.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161612736|ref|YP_001586701.1| GMP synthase [Salmonella enterica subsp. enterica serovar Paratyphi
           B str. SPB7]
 gi|167991815|ref|ZP_02572914.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168466744|ref|ZP_02700598.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197265595|ref|ZP_03165669.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361543|ref|YP_002141179.1| GMP synthase [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
 gi|204929457|ref|ZP_03220531.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|224582954|ref|YP_002636752.1| GMP synthase [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
 gi|75481714|sp|Q57LJ8|GUAA_SALCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81360644|sp|Q5PI52|GUAA_SALPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739721|sp|A9N218|GUAA_SALPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739722|sp|B5BAZ5|GUAA_SALPK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800113|sp|C0PYP4|GUAA_SALPC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56126865|gb|AAV76371.1| GMP synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62128711|gb|AAX66414.1| GMP synthetase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161362100|gb|ABX65868.1| hypothetical protein SPAB_00435 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195630797|gb|EDX49389.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093019|emb|CAR58455.1| GMP synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197243850|gb|EDY26470.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|204321176|gb|EDZ06376.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205329878|gb|EDZ16642.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|224467481|gb|ACN45311.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261247707|emb|CBG25534.1| GMP synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994622|gb|ACY89507.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301159060|emb|CBW18573.1| GMP synthase [glutamine-hydrolyzing] [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913496|dbj|BAJ37470.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321222790|gb|EFX47861.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322715563|gb|EFZ07134.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130838|gb|ADX18268.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989438|gb|AEF08421.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 525

 Score = 43.4 bits (101), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVMDMFGDHFGLNIVHVPAEERFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|260435923|ref|ZP_05789893.1| GMP synthase [Synechococcus sp. WH 8109]
 gi|260413797|gb|EEX07093.1| GMP synthase [Synechococcus sp. WH 8109]
          Length = 528

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           I+     VR  V    +L+A+SGG DS  L   L   + D+
Sbjct: 211 IDEAVGLVREQVGNKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|229057066|ref|ZP_04196458.1| hypothetical protein bcere0026_11820 [Bacillus cereus AH603]
 gi|229132237|ref|ZP_04261093.1| hypothetical protein bcere0014_11750 [Bacillus cereus BDRD-ST196]
 gi|229166274|ref|ZP_04294033.1| hypothetical protein bcere0007_12480 [Bacillus cereus AH621]
 gi|228617219|gb|EEK74285.1| hypothetical protein bcere0007_12480 [Bacillus cereus AH621]
 gi|228651175|gb|EEL07154.1| hypothetical protein bcere0014_11750 [Bacillus cereus BDRD-ST196]
 gi|228720207|gb|EEL71786.1| hypothetical protein bcere0026_11820 [Bacillus cereus AH603]
          Length = 223

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIQQFE--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +++   L I H+++ 
Sbjct: 50 CAAEIAKELGIKHTILD 66


>gi|37679527|ref|NP_934136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus YJ016]
 gi|61217310|sp|Q7MLT4|MNMA_VIBVY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|37198271|dbj|BAC94107.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Vibrio vulnificus YJ016]
          Length = 374

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 56/205 (27%), Gaps = 59/205 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D+  Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW----------EEDDDSEYCTAAEDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHA 114
                VC +L I    +++                 A R          E ++    E A
Sbjct: 57  ADAQAVCDKLGIHLHKINFAAEYWDNVFEYFLSEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 115 KT-INATLIMTAHTFDDQLETVYMRSQRDYAEKG------MGLSGMCD------TILYDL 161
              ++A  I   H             +R + E G       GL G  D      T+ ++ 
Sbjct: 117 DEVLDADYIAMGH-----------YVRRSFPENGEKPQMLRGLDGNKDQSYFLYTLSHEQ 165

Query: 162 NLWISRPFLRCRREDIRSFLLQRNI 186
                 P     + ++R    ++ +
Sbjct: 166 VARSLFPVGELEKPEVRRIAEEQGL 190


>gi|33519851|ref|NP_878683.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia
           floridanus]
 gi|81657434|sp|Q7U353|MNMA_BLOFL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33504196|emb|CAD83458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Blochmannia floridanus]
          Length = 369

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 34/135 (25%), Gaps = 40/135 (29%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS----- 74
             ++V +SGG DS      L           +K               DE  Y S     
Sbjct: 2   KKVIVGISGGVDSSVAAWLLQQQGYLVEGLFMKNW----------ENDDEKEYCSSEEDL 51

Query: 75  ----DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYA-------------------LIS 111
                +C+ L+I    V++     +           Y                     + 
Sbjct: 52  SDAWSICNTLKIPLHTVNFAQEYWENVFQVF--LQAYQSGFTPNPDVLCNKEIKFKHFLD 109

Query: 112 EHAKTINATLIMTAH 126
              + + A  I T H
Sbjct: 110 FALEDLGADFIATGH 124


>gi|110636377|ref|YP_676585.1| exsB protein [Mesorhizobium sp. BNC1]
 gi|118574288|sp|Q11B05|QUEC_MESSB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|110287361|gb|ABG65420.1| exsB protein [Chelativorans sp. BNC1]
          Length = 232

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H V  +++   +    IS D+  R   K E+ +      RL + H 
Sbjct: 7  CSGGLDSVSLA---HKVAVEKTLAGL----ISFDYGQRH--KKELDFARACAQRLDVRHM 57

Query: 86 VVSWKNSKPQ 95
          ++  +     
Sbjct: 58 IIDIRAVGEG 67


>gi|332141955|ref|YP_004427693.1| GMP synthase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551977|gb|AEA98695.1| GMP synthase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 525

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 19/185 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           ++  V    +++ +SGG DS    + LH  +          + + VD+  LR   A   +
Sbjct: 221 IKEKVGDERVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLLRLNEADQVM 274

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM-------AAAREARYALISEHAKTINATLIM 123
               D    L I       +      G+        A   E       E +K  NA  + 
Sbjct: 275 EMFGDH-FGLNINRVDAEGRFLDRLKGIEDPELKRKAIGNEFVRVFDEEASKLENAKWLA 333

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+             +        +  D+ L +  P     ++++R   L+
Sbjct: 334 QGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPEDMELGLVEPLRELFKDEVRKIGLE 390

Query: 184 RNISW 188
             + +
Sbjct: 391 LGLPY 395


>gi|327398348|ref|YP_004339217.1| tRNA-specific 2-thiouridylase mnmA [Hippea maritima DSM 10411]
 gi|327180977|gb|AEA33158.1| tRNA-specific 2-thiouridylase mnmA [Hippea maritima DSM 10411]
          Length = 338

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 30/124 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVCS 78
            + VA+SGG DS      L     +     +K               DE  ++    +  
Sbjct: 2   KVAVALSGGVDSATAAFLLKKEGHEVVGITLKLY------------DDESYIKQAEKIAE 49

Query: 79  RLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINATLI 122
            L I      +     +                       R  ++  + E A  +N   +
Sbjct: 50  FLGIEWHCFDYSLEFKKGVIDYFFNTYLNGKTPNPCVVCNRYVKFNYLLEVADKLNCDKL 109

Query: 123 MTAH 126
            T H
Sbjct: 110 ATGH 113


>gi|260886459|ref|ZP_05897722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sputigena ATCC 35185]
 gi|260863841|gb|EEX78341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Selenomonas sputigena ATCC 35185]
          Length = 344

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 47/191 (24%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD---------EVRYVSDVC 77
           SGG DS        ++L ++ +  +  +       L + +++         + R V+D  
Sbjct: 2   SGGVDS----SLCAALLQEQGYEVLGITM-----QLSDDSREMNGVSSAATDARRVADF- 51

Query: 78  SRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATL 121
             L I H V  ++                +           R  ++  +   AK   A  
Sbjct: 52  --LGIEHVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSFAKEKGADF 109

Query: 122 IMTAHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + T H    ++E     +  ++  RD  +     S +   +  ++   I  P    R+E+
Sbjct: 110 LATGHYV--RVEKEEDGSFSLKKGRDEKKDQ---SYVLYRLPREILSHILFPLGSYRKEE 164

Query: 177 IRSFLLQRNIS 187
            R+   + ++ 
Sbjct: 165 TRALAQKLSLP 175


>gi|253580125|ref|ZP_04857392.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848644|gb|EES76607.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39BFAA]
          Length = 360

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 63/191 (32%), Gaps = 36/191 (18%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-----LRET---AKDEVRYVS 74
           ++A+SGG DS    +       +     +K       H       RE    + D+V    
Sbjct: 5   IIAMSGGVDSSVAALLTKETGDECIGATMKLF-----HNEDIGVKREKTCCSLDDVEDAR 59

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAA--AREA-----------RYALISEH---AKTIN 118
           +VC R+ I + V ++     +  +     A E            RY    +     + + 
Sbjct: 60  NVCYRMGIRYYVFNFSERFKEDVMDRFVDAYEHGSTPNPCIDCNRYLKFDKMFQRMRELE 119

Query: 119 ATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              I+T H      D++     ++   D  +    +  M   +  +    IS P    R+
Sbjct: 120 YDYIVTGHYARVEYDEEKNRYLLKKAVDDTKDQSYVLYM---LTQEQLAHISLPLGGLRK 176

Query: 175 EDIRSFLLQRN 185
            ++R    +  
Sbjct: 177 TEVREIAEKHG 187


>gi|270308092|ref|YP_003330150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. VS]
 gi|270153984|gb|ACZ61822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dehalococcoides sp. VS]
          Length = 357

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 44/198 (22%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--------- 69
           P  I+VA+SGG DS    + L     D +   ++             + +E         
Sbjct: 5   PGLIMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQLK-----------SNNEPYGNGYNLK 53

Query: 70  -VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-------------REARY---ALISE 112
            +    +V + L I H VV   +   Q  +                 R   Y     + +
Sbjct: 54  LINRAREVAAALGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLD 113

Query: 113 HAKTINATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
                NA  + T H      D   T  ++   +  ++   L  +    L      +  P 
Sbjct: 114 KIPDFNAGYLATGHYARVLSDGNGTHLLKGADEKKDQSYFLYTLPPASLSR----LMFPL 169

Query: 170 LRCRREDIRSFLLQRNIS 187
            +  ++DI     +  + 
Sbjct: 170 GKRYKKDIIRLAAKMKLP 187


>gi|56698569|ref|YP_168945.1| ExsB [Ruegeria pomeroyi DSS-3]
 gi|81348746|sp|Q5LM13|QUEC_SILPO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|56680306|gb|AAV96972.1| ExsB [Ruegeria pomeroyi DSS-3]
          Length = 230

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS+ L    H V ++          IS D+  R   + E+ + +   +RL + H 
Sbjct: 7   CSGGLDSVSLA---HKVAAEHDL----IGLISFDYGQRH--RKELDFAARAATRLGVPHD 57

Query: 86  VVSWKNSKPQTGLMA 100
           ++  +         A
Sbjct: 58  LIDMRQIGAHLSGSA 72


>gi|15615765|ref|NP_244069.1| thiamin biosynthesis [Bacillus halodurans C-125]
 gi|10175826|dbj|BAB06922.1| thiamin biosynthesis [Bacillus halodurans C-125]
          Length = 382

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 41/179 (22%)

Query: 20  AHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVSDV 76
             +L+ +SGG DS +     L           +   AI          T +   + V D+
Sbjct: 158 GKVLLMLSGGIDSPVAGYYLLKR--------GVTLEAIHFH---SPPFTNEKAKQKVVDL 206

Query: 77  CSRL-----RIAHSVVSWK------NSKPQTGLMAA-AREARYALISEHAKTINATLIMT 124
            ++L     ++   +V +       + K  + +     R     +    AK  +A  I T
Sbjct: 207 AAKLTNFGGQVKLHIVPFTELQKHIHEKVPSNMEMTIMRRMMLRISEGIAKKTDALAIAT 266

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
                   E++         +         +TI       + RP L   +E++ +   +
Sbjct: 267 G-------ESL--------GQVASQTLHSMNTINEVTTTPVLRPLLTMDKEEVITVAKE 310


>gi|20140834|sp|Q9K804|THII_BACHD RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
          Length = 404

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 41/179 (22%)

Query: 20  AHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TAKDEVRYVSDV 76
             +L+ +SGG DS +     L           +   AI          T +   + V D+
Sbjct: 180 GKVLLMLSGGIDSPVAGYYLLKR--------GVTLEAIHFH---SPPFTNEKAKQKVVDL 228

Query: 77  CSRL-----RIAHSVVSWK------NSKPQTGLMAA-AREARYALISEHAKTINATLIMT 124
            ++L     ++   +V +       + K  + +     R     +    AK  +A  I T
Sbjct: 229 AAKLTNFGGQVKLHIVPFTELQKHIHEKVPSNMEMTIMRRMMLRISEGIAKKTDALAIAT 288

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
                   E++         +         +TI       + RP L   +E++ +   +
Sbjct: 289 G-------ESL--------GQVASQTLHSMNTINEVTTTPVLRPLLTMDKEEVITVAKE 332


>gi|99081242|ref|YP_613396.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria sp. TM1040]
 gi|123077645|sp|Q1GGT2|MNMA_SILST RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|99037522|gb|ABF64134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria sp. TM1040]
          Length = 381

 Score = 43.4 bits (101), Expect = 0.079,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 65/227 (28%), Gaps = 55/227 (24%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------ 65
           F +S      ++VA+SGG DS  +   L     D     ++      DH           
Sbjct: 14  FAKS-PAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLY----DHG--AALAKKGA 66

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARY 107
             A  ++     V       H V+ ++N      +   A                   ++
Sbjct: 67  CCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKF 126

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             + E AK + A  + T H             QR   E G  L    +    D + ++  
Sbjct: 127 KDLLETAKDLEADCMATGH-----------YIQRKMGEHGPELHS-AEDANRDQSYFLFS 174

Query: 168 -----------PFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
                      P      ++  R    Q  +S  + P + D  F   
Sbjct: 175 TTPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPN 221


>gi|317470972|ref|ZP_07930350.1| hypothetical protein HMPREF1011_00698 [Anaerostipes sp. 3_2_56FAA]
 gi|316901527|gb|EFV23463.1| hypothetical protein HMPREF1011_00698 [Anaerostipes sp. 3_2_56FAA]
          Length = 133

 Score = 43.4 bits (101), Expect = 0.080,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 16/130 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+VR FV+       + +A SGG DS  LL  L             F+ ++    L  + 
Sbjct: 13  EAVRGFVKE-----DVALAFSGGVDSSLLLKLLCLAAEKTGKKVAAFTMVT---KLHPS- 63

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINAT 120
             + +    V       H V+                     +   Y  + + AK +   
Sbjct: 64  -GDAKIAERVAGEAGAVHRVIHVDELSHAGIMDNPENRCYLCKRYLYTKLLKSAKALGIQ 122

Query: 121 LIMTAHTFDD 130
            ++     DD
Sbjct: 123 TVLEGTNADD 132


>gi|21280318|dbj|BAB96811.1| probable sulfate adenylyltransferase subunit 2 [Rhodococcus
           erythropolis]
          Length = 317

 Score = 43.4 bits (101), Expect = 0.080,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS  LL      +       + F+ + VD  H L+E        V+    RL +A
Sbjct: 51  FSGGKDSTVLLHL---AIKAFWPAPLPFTLLHVDTGHNLQEVLDFRDHVVAKYNLRLHVA 107


>gi|260889979|ref|ZP_05901242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia hofstadii F0254]
 gi|260860585|gb|EEX75085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia hofstadii F0254]
          Length = 371

 Score = 43.4 bits (101), Expect = 0.081,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 36/192 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET------AKDEV 70
             ++V +SGG DS    + L            +   +++ H    L E       + D++
Sbjct: 14  KKVVVGMSGGIDSSVAALLLKQ-------QGYEVIGVTLKHLPDELSENPGKTCCSLDDI 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMA----------------AAREARYALISEHA 114
                 C  L I H V++      +  +                     + +   + E A
Sbjct: 67  NDARYTCYTLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLLEFA 126

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
             +    I T H        + +  + +  ++    + M   +  D+      P     +
Sbjct: 127 DKMGIKYISTGHYSKVSENNMLLWDKNNRKDQ----TYMLYRLDKDVVERFLFPLAEYEK 182

Query: 175 EDIRSFLLQRNI 186
            ++R    Q  +
Sbjct: 183 SEVREIARQNGV 194


>gi|42521055|ref|NP_966970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila melanogaster]
 gi|81652123|sp|Q73FR5|MNMA_WOLPM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|42410796|gb|AAS14904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 370

 Score = 43.4 bits (101), Expect = 0.081,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 28/183 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDVCSR 79
           +VA+SGG DS      LH++        ++      +   R+    A  ++     V   
Sbjct: 22  VVAMSGGVDSSVAAALLHNLGYKVVGVTLQLYGTDGNANARKGACCAGQDIYDAKRVAES 81

Query: 80  LRIAHSVVSWKNSKPQTGLMAAARE-AR---------------YALISEHAKTINATLIM 123
           +   H +++++    +  +   A    R               +  + +  K + A +++
Sbjct: 82  VGFPHYLLNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVTKNLGADVLV 141

Query: 124 TAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-PFLRCRREDIRS 179
           T H     +   E    RS     ++   L            L + R P     + DIR 
Sbjct: 142 TGHYVRRLEKNGEVKLCRSIDKSKDQSYFLFATTQE-----QLKLLRFPLGGFYKSDIRK 196

Query: 180 FLL 182
              
Sbjct: 197 LAK 199


>gi|310657455|ref|YP_003935176.1| argininosuccinate synthase [Clostridium sticklandii DSM 519]
 gi|308824233|emb|CBH20271.1| argininosuccinate synthase [Clostridium sticklandii]
          Length = 421

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 76/243 (31%), Gaps = 30/243 (12%)

Query: 15  SLVYPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           ++     I++A SGG D S+        +   +        A  ++        ++++ V
Sbjct: 5   NITKKDKIVLAYSGGLDTSI-------IIPWLKENYNADIIAACINVGQ----DEDMQKV 53

Query: 74  SDVCSRLR-----IAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIM-TAH 126
            +   +       IA  V  +        + A A  E +Y L +  A+ + A  ++  AH
Sbjct: 54  QEKAIKSGASKVYIADVVDEFVKDYVYKSIKANALYEGKYLLGTALARPLIAKKLVEIAH 113

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC---RREDIRSFLLQ 183
                +E           +    +        +D ++ +  P+       RED   +   
Sbjct: 114 -----IEGAPYICHGCTGKGNDQVRFEVGIAAFDPDIKVIAPWRIWDIKSREDAIDYANA 168

Query: 184 RNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLT 243
           + I     P   D  + R +    +          K +   D+   +   +     +   
Sbjct: 169 KGIEV---PCTKDKIYSRDQNLLHISHEGGDLEDTKNEHKADILYMMTKTLEKASDEAEY 225

Query: 244 VHM 246
           V +
Sbjct: 226 VEL 228


>gi|167753427|ref|ZP_02425554.1| hypothetical protein ALIPUT_01701 [Alistipes putredinis DSM 17216]
 gi|167658052|gb|EDS02182.1| hypothetical protein ALIPUT_01701 [Alistipes putredinis DSM 17216]
          Length = 511

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +E+    +R  +    +++ +SGG DS    + LH  +            I VD  L
Sbjct: 198 SFVETTVRELREKLGDDRVVLGLSGGVDSSVAAVLLHRAIGK------NLYCIFVDSGL 250


>gi|16765830|ref|NP_461445.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|24211758|sp|Q8ZN60|GUAA_SALTY RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|16421053|gb|AAL21404.1| GMP synthetase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVMDMFGDHFGLNIVHVPAEERFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|289191947|ref|YP_003457888.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938397|gb|ADC69152.1| PP-loop domain protein [Methanocaldococcus sp. FS406-22]
          Length = 277

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 57/195 (29%), Gaps = 38/195 (19%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               +E + + ++   +  H ++A SGG DS+  L  L      R   K+    + VD  
Sbjct: 40  MKKEVEEILYNLKKEGWKYHCVLAFSGGKDSVLALKLL------REEFKLNPLCVMVD-- 91

Query: 62  LRETAKDEV-RYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEH 113
             +    E      +V     +   +++           K                +   
Sbjct: 92  -NKYMAKEAIENALNVTKHYNVDLMILNRDYTDLFEDAIKRGESPCRRCSRLILREVWRI 150

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK +    ++T H                      G S + D       + + R     +
Sbjct: 151 AKMLGLKYVITGHEL------------------PFGHSAVRDM---KEGIKMIRLLAPYK 189

Query: 174 REDIRSFLLQRNISW 188
            ++   + +  ++ W
Sbjct: 190 FKEEEKYKMLEDLPW 204


>gi|229821518|ref|YP_002883044.1| GMP synthase, large subunit [Beutenbergia cavernae DSM 12333]
 gi|229567431|gb|ACQ81282.1| GMP synthase, large subunit [Beutenbergia cavernae DSM 12333]
          Length = 515

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 37/198 (18%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDE 69
             +R+ V  A  +  +SGG DS     A+ + L  R+ G  + + + VDH  LR    ++
Sbjct: 202 AAIRAQVGDARAICGLSGGVDS-----AVAAALVQRAIGD-QLTCVFVDHGLLRAGEAEQ 255

Query: 70  VRYVSDVCSRLRIAHSVVSWKN---------SKPQTG-----------LMAAAREARYAL 109
           V    D      +   VV  +          S P+               AAAR+     
Sbjct: 256 VE--RDFVDATGVHLMVVDARERFLTALAGISDPEQKRKIIGREFIRVFEAAARDLVAQA 313

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             + A   +   ++    + D +E+             +        +  DL   +  P 
Sbjct: 314 GEDGA---DVRFLVQGTLYPDVVES-----GGGEGAANIKSHHNVGGLPEDLEFELVEPL 365

Query: 170 LRCRREDIRSFLLQRNIS 187
               ++++R+  L+  + 
Sbjct: 366 RTLFKDEVRAVGLELGVP 383


>gi|15606275|ref|NP_213654.1| NH(3)-dependent NAD+ synthetase [Aquifex aeolicus VF5]
 gi|6093465|sp|O67091|NADE_AQUAE RecName: Full=Probable glutamine-dependent NAD(+) synthetase;
           AltName: Full=NAD(+) synthase [glutamine-hydrolyzing]
 gi|2983464|gb|AAC07044.1| NH(3)-dependent NAD+ synthetase [Aquifex aeolicus VF5]
          Length = 567

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 16/88 (18%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI----KFSAISVDHCLR 63
           S+R +VR   +   +++ +SGG DS  +       L   +   +    +FS         
Sbjct: 300 SLRDYVRKNGFE-KVVLGLSGGIDSSFVACLAVDALGRENVKGVYMPSQFS--------S 350

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN 91
           + + ++      +   L I   V+  K 
Sbjct: 351 KESYEDA---KALAQNLGIEFHVIPIKE 375


>gi|291277423|ref|YP_003517195.1| GMP synthase [Helicobacter mustelae 12198]
 gi|290964617|emb|CBG40471.1| GMP synthase (glutamine-hydrolyzing) [Helicobacter mustelae 12198]
          Length = 521

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 69/188 (36%), Gaps = 25/188 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +RS V    +L AVSGG DS  +   L+  +            + VD   LR+  ++ V+
Sbjct: 215 IRSRVKDGKVLCAVSGGVDSSVVATLLYRAIGG------DLIPVFVDTGLLRKGEREAVQ 268

Query: 72  YVSDVCSRLRIAHSVVS----WKNSKPQTGLMAAAREAR----YALISEHAKTINAT--- 120
             S     L++    V     + +           R+        +  + AK  NA    
Sbjct: 269 --SMFKDHLKVPLITVDASEIFLSRLRGVSDPEKKRKIIGETFIEVFEKEAKKHNANGEI 326

Query: 121 -LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+V ++      +    + G+ D + ++    +  P     ++++R+
Sbjct: 327 KFLAQGTLYPDVIESVSVKGPSKTIKSHHNVGGLPDWMQFE----LIEPLRELFKDEVRA 382

Query: 180 FLLQRNIS 187
              +  + 
Sbjct: 383 LGRELGMP 390


>gi|218780316|ref|YP_002431634.1| ExsB family protein [Desulfatibacillum alkenivorans AK-01]
 gi|218761700|gb|ACL04166.1| ExsB family protein [Desulfatibacillum alkenivorans AK-01]
          Length = 279

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 59/207 (28%), Gaps = 59/207 (28%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
             V+     L     +LVA SGG DS         +   +     K +A +VD      +
Sbjct: 16  AKVQQVRDMLAAQKSVLVAFSGGVDSS------LLLALAQQALGDKTAAGTVD------S 63

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------------A 108
               + E +  + +  +L I H ++              +RE R                
Sbjct: 64  PLLPQREKQEAALLTQQLGIKHHIIK--------AGEMDSREFRANPKNRCYICKGLHTR 115

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            + E AK++    +      DD                    S     +     L +  P
Sbjct: 116 ALMELAKSLGLAKVAHGANTDD-------------------YSDYRPGLQAARELGVLSP 156

Query: 169 FLR--CRREDIRSFLLQRNISWCEDPS 193
                  +++IR       +   + PS
Sbjct: 157 LADAGLSKQEIREASKALGLKTWDKPS 183


>gi|90419040|ref|ZP_01226951.1| tRNA methyl transferase
           ((5-methylaminomethyl-2-thiouridylate)-
           methyltransferase) [Aurantimonas manganoxydans SI85-9A1]
 gi|90337120|gb|EAS50825.1| tRNA methyl transferase
           ((5-methylaminomethyl-2-thiouridylate)-
           methyltransferase) [Aurantimonas manganoxydans SI85-9A1]
          Length = 425

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 55/194 (28%), Gaps = 31/194 (15%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----AKDEVRY 72
                ++VA+SGG DS  +   L     D     ++          R      A  ++  
Sbjct: 46  PADTRVVVAMSGGVDSSVVAAILKEQGYDVVGITLQLYDAG--EGARRAGSCCAGQDIHD 103

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKT 116
              V   L I H V+ +++   +  +   A                   ++  +   A+ 
Sbjct: 104 ARRVAETLGIHHYVLDYEDRFRKAVINPFAASYLAGETPIPCVACNQTVKFRDLLATAQD 163

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL----WISRPFLRC 172
           + A  + T H     +E+           +   L       LY        ++  P    
Sbjct: 164 LGADALATGH----YIESR-QNGAHRSLYRPADLDRDQSYFLYGTTQEQLDFLRFPLGGL 218

Query: 173 RREDIRSFLLQRNI 186
            +   R    +  +
Sbjct: 219 TKPQTRELAERHGL 232


>gi|77918822|ref|YP_356637.1| GMP synthase [Pelobacter carbinolicus DSM 2380]
 gi|91206814|sp|Q3A590|GUAA_PELCD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|77544905|gb|ABA88467.1| GMP synthase (glutamine-hydrolyzing) [Pelobacter carbinolicus DSM
           2380]
          Length = 520

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 63/194 (32%), Gaps = 23/194 (11%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R  V    +++ +SGG DS      +   + D      +   + VD+  LR 
Sbjct: 209 IEDAVVRIREQVGSERVILGLSGGVDSSVAAALIQRAIGD------QLVCVFVDNGLLR- 261

Query: 65  TAKDEVRYV-SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH---------A 114
              DE   V       + +    V+ ++         +  E +  +I            A
Sbjct: 262 --LDEGDQVMRTFAQNMGVNVIRVNAQDRFMTALAGESDPERKRKIIGNLFVEIFEEESA 319

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
              +AT +     + D +E+      +      +        +   + L +  P     +
Sbjct: 320 NIEDATWLAQGTIYPDVIES---AGAKTGKAHNIKSHHNVGGLPEHMKLKLLEPLRELFK 376

Query: 175 EDIRSFLLQRNISW 188
           +++R+   +  +  
Sbjct: 377 DEVRAIGEELGLPH 390


>gi|300727735|ref|ZP_07061121.1| protein ExsB [Prevotella bryantii B14]
 gi|299775023|gb|EFI71629.1| protein ExsB [Prevotella bryantii B14]
          Length = 217

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 64/203 (31%), Gaps = 55/203 (27%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
              ++V VSGG DS+ LL             +I    IS D+        E+ +    C 
Sbjct: 2   KDSVIV-VSGGLDSITLLY--------EKQAEIALG-ISFDYG-SNHNSKEIPFAKMHCE 50

Query: 79  RLRIAHSVVSWK---NSKPQTGLM--AAAREARYA------------------LISEHAK 115
           RL I H  ++ +        + L    A  E  Y                   +    A+
Sbjct: 51  RLGIKHITINLEFMHQYFKSSLLEGGDAIPEGNYDEENMKSTVVPFRNGIMLSIAVGLAE 110

Query: 116 TINATLIMTAHTFDDQLETV-------YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           +     I  A+   D   T+       ++++  + A+ G              N+ I  P
Sbjct: 111 SHGLKRIFIANHGGDH--TIYPDCRPEFIQAIDNAAQAGT-----------YENVRIEAP 157

Query: 169 FLRCRREDIRSFLLQRNISWCED 191
           +    + DI        I + ED
Sbjct: 158 YTNITKADIVKRGSALGIHY-ED 179


>gi|297564753|ref|YP_003683725.1| NAD+ synthetase [Meiothermus silvanus DSM 9946]
 gi|296849202|gb|ADH62217.1| NAD+ synthetase [Meiothermus silvanus DSM 9946]
          Length = 289

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 22/95 (23%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLR 81
           +VA+SGG DS   L      L  ++       A+ + H + R  ++    +   +     
Sbjct: 41  VVALSGGVDSAVTLALGVQALGAKN-----VYAVYMPHAISRPESR---EHAELIAGMYG 92

Query: 82  IAHSVVSWKN-------------SKPQTGLMAAAR 103
           +   VV                  + +   MA AR
Sbjct: 93  VPFEVVDITGMVESYAAQVPDITPRRKGNAMARAR 127


>gi|187934812|ref|YP_001886173.1| ExsB protein [Clostridium botulinum B str. Eklund 17B]
 gi|187722965|gb|ACD24186.1| ExsB protein [Clostridium botulinum B str. Eklund 17B]
          Length = 233

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 18/77 (23%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVR 71
          L     I+V  SGG DS   L        +         A+S D    H L      E+ 
Sbjct: 13 LDKEKAIVV-FSGGQDSTTCLFWAKKRFRE-------VIAVSFDYNQKHKL------ELE 58

Query: 72 YVSDVCSRLRIAHSVVS 88
             D+C +  + H ++ 
Sbjct: 59 CARDICKKYDVEHHILD 75


>gi|148982372|ref|ZP_01816737.1| predicted aluminum resistance protein [Vibrionales bacterium
          SWAT-3]
 gi|145960508|gb|EDK25874.1| predicted aluminum resistance protein [Vibrionales bacterium
          SWAT-3]
          Length = 86

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEYD--------EVHAITFDYGQRH--KLEIEVAESLAKEL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|315053253|ref|XP_003176000.1| GMP synthase [Arthroderma gypseum CBS 118893]
 gi|311337846|gb|EFQ97048.1| GMP synthase [Arthroderma gypseum CBS 118893]
          Length = 541

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 4   SPIESVRFFVRSLV-YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
             ++     +R++V     ++ AVSGG DS      +   + DR      F A+ VD+  
Sbjct: 218 KFVDKELARIRAMVGEHGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLVDNGV 271

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
           +R     E   V + +   L I  +V+                E +  +I      I   
Sbjct: 272 MRLN---EAEIVRETLTKNLGINLTVIDASEKFLGRLKGVIDPEQKRKIIGNTFIEIFQD 328

Query: 121 LIMT------AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------LYDLNLWI 165
              T       +   D++E +   +      + +   G   TI         L  ++L +
Sbjct: 329 TAKTIVEQSAGYKEGDKIEWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLKGMHLKL 388

Query: 166 SRPFLRCRREDIRSFLLQRNISWCED 191
             P     ++++RS      I   ED
Sbjct: 389 IEPLRELFKDEVRSLGTNLGIP--ED 412


>gi|153806905|ref|ZP_01959573.1| hypothetical protein BACCAC_01181 [Bacteroides caccae ATCC 43185]
 gi|149131582|gb|EDM22788.1| hypothetical protein BACCAC_01181 [Bacteroides caccae ATCC 43185]
          Length = 301

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSR 79
           I+V+ SGG DS   L     + +   +G  K  A+  D            +++SDVC +
Sbjct: 2  KIIVSFSGGKDSQACL-----IQAANKYGADKIEAVFCDTGWEHPETY---QHISDVCKQ 53

Query: 80 LRIAHSVVSWK 90
          L +   V+  K
Sbjct: 54 LDVKLVVLRSK 64


>gi|320156716|ref|YP_004189095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus MO6-24/O]
 gi|319932028|gb|ADV86892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Vibrio vulnificus MO6-24/O]
          Length = 374

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 55/203 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRY 72
             ++V +SGG DS      L           +K           E        A +++  
Sbjct: 7   KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMK--------NWEEDDNSEYCTAAEDLAD 58

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAK 115
              VC +L I    +++ +           A  +  R               A +    +
Sbjct: 59  AQAVCDKLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADE 118

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKG------MGLSGMCD------TILYDLNL 163
            ++A  I   H             +R + E G       GL G  D      T+ ++   
Sbjct: 119 VLDADYIAMGH-----------YVRRSFPENGEKPQMLRGLDGNKDQSYFLYTLSHEQVA 167

Query: 164 WISRPFLRCRREDIRSFLLQRNI 186
               P     + ++R    ++ +
Sbjct: 168 RSLFPVGELEKPEVRRIAEEQGL 190


>gi|317477931|ref|ZP_07937114.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
 gi|316905845|gb|EFV27616.1| tRNA methyl transferase [Bacteroides sp. 4_1_36]
          Length = 363

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 62/206 (30%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VR 71
           S+     +L+ +SGG+DS    + L     + +    +F            A DE   + 
Sbjct: 13  SMKSDKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY----------EAGDETGYLE 62

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAR------------EARYALISEHAK 115
               +  +L + H     +       +        R            E ++AL+++ A 
Sbjct: 63  DARALALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIAD 122

Query: 116 TINATLIMTAH---------------TFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
                 I T H                 D D+ +T +             L G+   IL 
Sbjct: 123 EKGIYWISTGHYVRKVLSGGKYYIAPAADKDKDQTFF-------------LWGLKQDILQ 169

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRN 185
            +      P     + + RS+  +R 
Sbjct: 170 RM----LLPMGDITKNEARSYAAERG 191


>gi|255728973|ref|XP_002549412.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404]
 gi|240133728|gb|EER33284.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404]
          Length = 426

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 59/197 (29%), Gaps = 42/197 (21%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYV 73
              HI+VA+S G DS        +  +                   + A    +D  R V
Sbjct: 64  PEDHIIVAMSSGVDSSVCAALFQNYKNVHGIYMAN---------WSQNATCTERDW-RDV 113

Query: 74  SDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREA---------RYALISEHAKTINAT 120
             VC  L I    V++++          +    R           +Y    + A+ +   
Sbjct: 114 QKVCQDLNIDCERVNFEHEYWNDVFLPMIEKYERGLTPNPDIGCNKYVKFGKLAEYLEQK 173

Query: 121 L------IMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
                  ++T H       +   E   +R      ++   LS +  +IL         P 
Sbjct: 174 YHGKKWWLVTGHYARVMKHNATGEYHLLRGLSSRKDQSYYLSSIPASILSKT----ILPI 229

Query: 170 LRCRREDIRSFLLQRNI 186
               + +IR    + N+
Sbjct: 230 GHYTKPEIRELAKKFNL 246


>gi|254429373|ref|ZP_05043080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax sp. DG881]
 gi|196195542|gb|EDX90501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Alcanivorax sp. DG881]
          Length = 364

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 41/200 (20%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------- 65
           +R       ++V +SGG DS      L           +K           E        
Sbjct: 1   MRKAPKDTRVIVGMSGGVDSSVAAARLIDAGYQVEGLFMK--------NWNEDDGTDYCT 52

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW------KNSKPQTGLMAAAR----------EARYAL 109
           A++++     V   L I     ++      +          A R          E ++  
Sbjct: 53  AREDLLDAMQVAGVLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQA 112

Query: 110 ISEHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
             +HA T+ A  I T H       D+ +   +R+     ++   L  + D   +D  L+ 
Sbjct: 113 FLDHAITLGADYIATGHYSQVSHGDKAQ--LLRAVDTNKDQTYFLHAV-DYQKFDRTLF- 168

Query: 166 SRPFLRCRREDIRSFLLQRN 185
             P     + ++R    ++ 
Sbjct: 169 --PLGDLEKPEVRRIAEEKG 186


>gi|169630797|ref|YP_001704446.1| GMP synthase [glutamine-hydrolyzing] [Mycobacterium abscessus ATCC
           19977]
 gi|169242764|emb|CAM63792.1| GMP synthase [glutamine-hydrolyzing] [Mycobacterium abscessus]
          Length = 526

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 32/200 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E++   VR+ +     L A+SGG DS     A+ + L  R+ G  + + + VDH  LR  
Sbjct: 208 ETLVEQVRTQIGEGRALCALSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRSG 261

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHA-- 114
            + +V +  D  +        V             + P+       RE   +     +  
Sbjct: 262 ERAQVEH--DFVAATGATLVTVDASETFLGELAGVTDPEAKRKIIGREFIRSFEGAVSDV 319

Query: 115 -------KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
                   T     ++    + D +E+             +        +  DL   +  
Sbjct: 320 VGDSRRDDTAGIQFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLTFTLVE 374

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     ++++R+   +  + 
Sbjct: 375 PLRLLFKDEVRAVGRELGLP 394


>gi|254363194|ref|ZP_04979243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mannheimia haemolytica PHL213]
 gi|153095088|gb|EDN75639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mannheimia haemolytica PHL213]
          Length = 387

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 54/200 (27%), Gaps = 45/200 (22%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               +++ +SGG DS      L           +K               D+  Y     
Sbjct: 26  SKKKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAA 75

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALIS 111
                  V  +L +    +++             A  +  R               A + 
Sbjct: 76  ELADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLE 135

Query: 112 EHAKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
             A+ + A  I T H    T DDQ +   +R   +  ++   L  +    +         
Sbjct: 136 YAAEDLGADYIATGHYVRRTSDDQ-DAKLLRGLDENKDQSYFLYALNKKQI----GQSLF 190

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     +  +R+      ++
Sbjct: 191 PVGEIEKPIVRAIAEDLGLA 210


>gi|254374309|ref|ZP_04989791.1| GMP synthase [Francisella novicida GA99-3548]
 gi|151572029|gb|EDN37683.1| GMP synthase [Francisella novicida GA99-3548]
 gi|332678183|gb|AEE87312.1| GMP synthase glutamine-hydrolyzing [Francisella cf. novicida Fx1]
          Length = 516

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    ++V 
Sbjct: 212 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGNQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 266 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|118497489|ref|YP_898539.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Francisella tularensis subsp. novicida U112]
 gi|195536182|ref|ZP_03079189.1| GMP synthase, C- domain protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208779287|ref|ZP_03246633.1| GMP synthase, C- domain protein [Francisella novicida FTG]
 gi|226739623|sp|A0Q6C0|GUAA_FRATN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118423395|gb|ABK89785.1| GMP synthetase (glutamine-hydrolyzing) [Francisella novicida U112]
 gi|194372659|gb|EDX27370.1| GMP synthase, C- domain protein [Francisella tularensis subsp.
           novicida FTE]
 gi|208745087|gb|EDZ91385.1| GMP synthase, C- domain protein [Francisella novicida FTG]
          Length = 516

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS  +   LH  + D      + + I VD   LR    ++V 
Sbjct: 212 IKQKVGTDKVILGLSGGVDSSVVAAILHQAIGD------QLTCIFVDTGLLRLNEGNQVM 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT--GLM--AAAREARYALI-----SEHAKTINATLI 122
            V      + I    ++ KN       G+      R+    L       E AK  NA  +
Sbjct: 266 QV--FAEHMDINVIRINAKNRFLDALRGICDPEQKRKIIGKLFVDIFDEEAAKIENAKWL 323

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      + +  K          +  ++ L +  P     ++++R   L
Sbjct: 324 AQGTIYSDVIESAGNNQSKAHVIKS---HHNVGGLPKEMKLKLLEPLRELFKDEVRKLGL 380

Query: 183 QRNISW 188
              + +
Sbjct: 381 GLGLPY 386


>gi|227872480|ref|ZP_03990820.1| NAD(+) synthase (glutamine-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841681|gb|EEJ51971.1| NAD(+) synthase (glutamine-hydrolyzing) [Oribacterium sinus F0268]
          Length = 656

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 25/133 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDV 76
             +++ +SGG DS   L       +   + K     I++      +   +K        +
Sbjct: 349 KKLILGLSGGLDSTLALFVCLETFALLGYDKENILCITM-----PSFGTSKKTHDSAEKL 403

Query: 77  CSRLRIAHSVVSW-------------KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
              L I+   +S                 K       A    R  ++ + A    A L+ 
Sbjct: 404 AKALGISLREISIEKAVLQHFFDIGHDGEKKDIVYENAQARERTQILMDLANKEGALLVG 463

Query: 124 TAHTFDDQLETVY 136
           T     D  E   
Sbjct: 464 TG----DLSELAL 472


>gi|281419887|ref|ZP_06250886.1| ExsB protein [Prevotella copri DSM 18205]
 gi|281406014|gb|EFB36694.1| ExsB protein [Prevotella copri DSM 18205]
          Length = 217

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 39/188 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +I    IS ++      + E+ +    C RL I H 
Sbjct: 8   VSGGMDSITLLY--------DKKDEIALG-ISFNYG-SNHNEREIPFAKMHCERLGIKHI 57

Query: 86  VVS--WKNSKPQTGLMAAAR---EARYA------------------LISEHAKTINATLI 122
            +   + +   ++ L+  A    E  YA                  +    A++ N   +
Sbjct: 58  TIDLGFMHQYFKSSLLEGADAIPEGHYADDNMKSTVVPFRNGIMLSIAIGIAESNNLKKV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             A+   D          R    K +  +    T +   ++ +  P+    +  I     
Sbjct: 118 FIANHGGDHT---IYPDCRPEFIKAIDEAAEAGTFV---DVRVVAPYTNITKGQIAEIGK 171

Query: 183 QRNISWCE 190
           +  I + E
Sbjct: 172 KLGIDYAE 179


>gi|205815324|sp|B0KC14|MNMA1_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
          Length = 364

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 64/245 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L             F  I V   + +   +E   V  
Sbjct: 1   MKKNNRVVVGMSGGVDSSVSAYLLKEQG---------FDVIGVTMQIWQDKDEEAVRVEG 51

Query: 74  -----------SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARY 107
                        V +++ I + V+++K+   +                    A  +  Y
Sbjct: 52  GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNK--Y 109

Query: 108 ALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMG-LSGMCDTILY 159
               E  K    I+A  + T H      D++     ++   D ++     L  +  T L 
Sbjct: 110 IKFEELLKRAWMIDAYYVATGHYAIKEYDEERGRYLLKKSVDTSKDQTYVLYNLTQTQLE 169

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPSNTDDRFERVRVRRFV 208
                I  P  + +++++R       +            +  D  N   +F R   +  +
Sbjct: 170 ----HILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTD--NDYGKFIRENAKEEI 223

Query: 209 RDIDL 213
           +  + 
Sbjct: 224 KPGEF 228


>gi|194445647|ref|YP_002041769.1| GMP synthase [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|226739720|sp|B4T0N7|GUAA_SALNS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|194404310|gb|ACF64532.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVMDMFGDHFGLNIVHVPAEERFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|159487955|ref|XP_001701988.1| GMP synthetase [Chlamydomonas reinhardtii]
 gi|28630437|gb|AAO45104.1| GMP synthetase [Chlamydomonas reinhardtii]
 gi|158281207|gb|EDP06963.1| GMP synthetase [Chlamydomonas reinhardtii]
          Length = 535

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 28/85 (32%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSF----------------------GKIK 52
            +    H++ A+SGG DS      +H VL DR                          + 
Sbjct: 224 QVGPDDHVICALSGGVDSTVAATLVHKVLGDRLHCVFVDNGLLRYNEQQRVMDTFKNHLH 283

Query: 53  FSAISVDH------CLRETAKDEVR 71
              + VDH       LR  +  E +
Sbjct: 284 LPVLCVDHSKPMLDRLRGLSDPEAK 308


>gi|113478065|ref|YP_724126.1| hypothetical protein Tery_4689 [Trichodesmium erythraeum IMS101]
 gi|110169113|gb|ABG53653.1| conserved hypothetical protein [Trichodesmium erythraeum IMS101]
          Length = 281

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 77/258 (29%), Gaps = 64/258 (24%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E ++     +      L+A SGG DS  +    + +L D++   +  +A+    
Sbjct: 1   MLTKKLEELKNIFAEMEKA---LIAYSGGIDSTLVAKVAYDILGDKA---LAITAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEH 113
               +   +++       + + I+H  V     + +             +   +  +   
Sbjct: 51  --SPSLLPEDLEDARIQAAVIGISHEEVKTNEMENKNYTSNPINRCYFCKSELHDTLKPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A       ++     DD      +R  R          G+           ++   +   
Sbjct: 109 ALKRGYFYVLDGVNADD------LRDYR---------PGIQAAKERGARSPLAE--VGIS 151

Query: 174 REDIRSFLLQRNISWCEDPS----------------------NTDDRFERV------RVR 205
           + ++R      ++ W + PS                         +R+ R       RVR
Sbjct: 152 KFEVRQLAKDLDLPWWDKPSQPCLSSRFPYGEEITLEKLQRVGRGERYLRNLGLKSLRVR 211

Query: 206 RFVRDIDLHALYLKMKKF 223
                  +  L  K+K+F
Sbjct: 212 SEKDTARIEILPEKIKEF 229


>gi|308186449|ref|YP_003930580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Pantoea vagans C9-1]
 gi|308056959|gb|ADO09131.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Pantoea vagans C9-1]
          Length = 370

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 51/196 (26%), Gaps = 43/196 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAADDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           A+ + A  I T H     D   ++  +R      ++   L  +    +         P  
Sbjct: 117 AEDLGADFIATGHYVRRKDVDGQSQLLRGLDGNKDQSYFLYTLSHEQIAQS----LFPVG 172

Query: 171 RCRREDIRSFLLQRNI 186
              + ++R    Q ++
Sbjct: 173 ELEKPEVRRIAEQLDL 188


>gi|298506230|gb|ADI84953.1| guanosine monophosphate synthase [Geobacter sulfurreducens KN400]
          Length = 520

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 65/192 (33%), Gaps = 21/192 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R+ V    +++ +SGG DS      +H  + D      + + + VD+  LR 
Sbjct: 209 IEDAVNRIRAQVGRERVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRL 262

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA---------K 115
              D+V   +     L +    V  +          A  E +  +I             +
Sbjct: 263 AEGDQVM--ATFAENLGVKVIRVDAEQRFLTALAGEADPEKKRKIIGNLFVEIFEEESNR 320

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +AT +     + D +E+      +      +        +   + L +  P     ++
Sbjct: 321 IEDATWLAQGTIYPDVIES---AGSKTGKAHNIKSHHNVGGLPEYMKLKLLEPLRELFKD 377

Query: 176 DIRSFLLQRNIS 187
           ++R+   +  + 
Sbjct: 378 EVRAIGEELGLP 389


>gi|119897872|ref|YP_933085.1| GMP synthase [Azoarcus sp. BH72]
 gi|226738380|sp|A1K5U3|GUAA_AZOSB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|119670285|emb|CAL94198.1| GMP synthase (glutamine-hydrolyzing) [Azoarcus sp. BH72]
          Length = 521

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +++ +SGG DS      +H  + D      + + + VD+  LR     E  
Sbjct: 217 IRAQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRLN---EGA 267

Query: 72  YV-SDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V       L +    V             S P+       RE      +E AK   A  
Sbjct: 268 QVMETFNRSLGVKVIHVDATEQFMGHLKGVSDPEQKRKIIGREFVEVFQAEAAKLPKARW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   LNL +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGAKTGKAHAIKSHHNVGGLPETLNLKLLEPLRDLFKDEVRELG 384

Query: 182 LQRNISW 188
           +   +  
Sbjct: 385 VALGLPH 391


>gi|296114840|ref|ZP_06833488.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978546|gb|EFG85276.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC
           23769]
          Length = 358

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 44/161 (27%), Gaps = 35/161 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---------AISVDHCLRETAKDEVR 71
            ILVA+SGG DS  +   L     +     ++           A          A  ++ 
Sbjct: 2   RILVAMSGGVDSSVVAARLVEEGHEVVGATLQLYDSRESARKGACC--------AGRDIH 53

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS----EHAKTINATLIMTAHT 127
               V  RL IAH V+  +     + +   A    YA         A             
Sbjct: 54  DARRVADRLGIAHYVIDAERRFRDSVIETFADA--YAEGETPVPCVACNQGVKF------ 105

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
                 T  +   RD     M        I     + + RP
Sbjct: 106 ------TDLLGMARDLGVDAMATGHYVRRIEGPQGVELHRP 140


>gi|148269543|ref|YP_001244003.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga petrophila RKU-1]
 gi|166235088|sp|A5IJQ4|MNMA_THEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|147735087|gb|ABQ46427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermotoga petrophila RKU-1]
          Length = 358

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 60/199 (30%), Gaps = 44/199 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFG------------KIKFSAISVDHCLRETAK 67
            + VA+SGG DS + L + L      ++F             +IK            +  
Sbjct: 2   KVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKKVCC-----SPSDT 56

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM----------------AAAREARYALIS 111
            +   ++     L +   +V  K    +  +                    R  ++  + 
Sbjct: 57  ADAMRIAHF---LGVEIEIVDVKEIFREKVIEPFKSDLLKGLTPNPCVHCNRFVKFGYLM 113

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----ISR 167
           ++          + H    ++E    +  R   +KG+ L       L  +  W    +  
Sbjct: 114 DYVLNQGFDAFASGHYA--RIE-FSEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIF 170

Query: 168 PFLRCRREDIRSFLLQRNI 186
           P     +E+IR    +  I
Sbjct: 171 PNGIYTKEEIRKIAEEAGI 189


>gi|150017399|ref|YP_001309653.1| exsB protein [Clostridium beijerinckii NCIMB 8052]
 gi|189038906|sp|A6LWG7|QUEC_CLOB8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|149903864|gb|ABR34697.1| exsB protein [Clostridium beijerinckii NCIMB 8052]
          Length = 217

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  AL            +  A++ D+   +  + E+   + +   L
Sbjct: 6  VVV-FSGGQDSTTCLFWALKEFD--------EVIAVTFDYN--QKHRKEIECATSIAKEL 54

Query: 81 RIAHSVVS 88
           I H ++ 
Sbjct: 55 GIEHHILD 62


>gi|296109747|ref|YP_003616696.1| NAD+ synthetase [Methanocaldococcus infernus ME]
 gi|295434561|gb|ADG13732.1| NAD+ synthetase [Methanocaldococcus infernus ME]
          Length = 247

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 30/138 (21%)

Query: 7   ESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           E +  F+R++V  A+   ++V +SGG DS          L       +            
Sbjct: 3   EKILEFIRNVVKEANANGVVVGLSGGIDSSTTAFLCVKALGKDKVLGLIL---------- 52

Query: 64  ET---AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA-------------AAREARY 107
                 K+++     V   L I + ++   +     GL                AR  R 
Sbjct: 53  PEKTTRKEDIEDAKKVAEMLGIKYYIIDITDVLKAFGLYTPTKEFEKIPDGNLKAR-VRM 111

Query: 108 ALISEHAKTINATLIMTA 125
            ++  +A   N  +  TA
Sbjct: 112 CVLYYYANKYNYLVAGTA 129


>gi|222444394|ref|ZP_03606909.1| hypothetical protein METSMIALI_00005 [Methanobrevibacter smithii
           DSM 2375]
 gi|222433959|gb|EEE41124.1| hypothetical protein METSMIALI_00005 [Methanobrevibacter smithii
           DSM 2375]
          Length = 312

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 33/190 (17%)

Query: 2   FLSPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
            L P E ++  ++ +   +     ++A+SGG DS        SVL   + G     AI V
Sbjct: 5   MLGPEEFIKDAIQKIKEQIGDEKAIIALSGGVDSSV-----CSVLVQEAIGD-NLIAIFV 58

Query: 59  DHC-LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------AL 109
           DH  LRE    EV  V++    RL   +   S +      G+     E R         +
Sbjct: 59  DHGLLREG---EVEEVTNTFKDRLNFNYVDASEEFLNALEGVEDP-EEKRKIIGKVFIDV 114

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               A+  +A  ++      D +E+           KG   S     +   + L +  P 
Sbjct: 115 FEREAEKTDAKYLVQGTIAPDWIES-----------KGKIKSHHNLALPSGMVLELVEPI 163

Query: 170 LRCRREDIRS 179
               ++++R 
Sbjct: 164 RDLYKDEVRE 173


>gi|186683955|ref|YP_001867151.1| ExsB family protein [Nostoc punctiforme PCC 73102]
 gi|186466407|gb|ACC82208.1| ExsB family protein [Nostoc punctiforme PCC 73102]
          Length = 275

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 56/199 (28%), Gaps = 40/199 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E ++     +      L+A SGG DS  +    +  L DR+   +  +A+    
Sbjct: 1   MLTEKFEQLKALFEEMEQA---LIAYSGGVDSTLVAKIAYDALGDRA---LAVTAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEH 113
               +   +E+       + + IAH +V     +               +   +  +   
Sbjct: 51  --SPSLLPEELEDAKIQAATIGIAHKIVQTHEMENPNYTSNPVNRCYFCKSELHDTLKPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           A  +    ++     DD                   L      I          P   + 
Sbjct: 109 ALQLGYPYVVDGVNADD-------------------LHDYRPGIQAAKERGARSPLAEVG 149

Query: 172 CRREDIRSFLLQRNISWCE 190
             + ++R    Q  + W +
Sbjct: 150 VTKVEVRQLSQQLGLPWWD 168


>gi|148642405|ref|YP_001272918.1| GMP synthase subunit B [Methanobrevibacter smithii ATCC 35061]
 gi|261351056|ref|ZP_05976473.1| GMP synthase [Methanobrevibacter smithii DSM 2374]
 gi|148551422|gb|ABQ86550.1| GMP synthase (glutamine-hydrolysing), PP-ATPase domain/subunit,
           GuaA [Methanobrevibacter smithii ATCC 35061]
 gi|288860396|gb|EFC92694.1| GMP synthase [Methanobrevibacter smithii DSM 2374]
          Length = 308

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 33/190 (17%)

Query: 2   FLSPIESVRFFVRSL---VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
            L P E ++  ++ +   +     ++A+SGG DS        SVL   + G     AI V
Sbjct: 1   MLGPEEFIKDAIQKIKEQIGDEKAIIALSGGVDSSV-----CSVLVQEAIGD-NLIAIFV 54

Query: 59  DHC-LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------AL 109
           DH  LRE    EV  V++    RL   +   S +      G+     E R         +
Sbjct: 55  DHGLLREG---EVEEVTNTFKDRLNFNYVDASEEFLNALEGVEDP-EEKRKIIGKVFIDV 110

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               A+  +A  ++      D +E+           KG   S     +   + L +  P 
Sbjct: 111 FEREAEKTDAKYLVQGTIAPDWIES-----------KGKIKSHHNLALPSGMVLELVEPI 159

Query: 170 LRCRREDIRS 179
               ++++R 
Sbjct: 160 RDLYKDEVRE 169


>gi|88607883|ref|YP_505483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma phagocytophilum HZ]
 gi|123494742|sp|Q2GJG8|MNMA_ANAPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|88598946|gb|ABD44416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Anaplasma phagocytophilum HZ]
          Length = 378

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 49/143 (34%), Gaps = 36/143 (25%)

Query: 13  VRSLVYPAH-----ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           + SLV         ++VA+SGG DS  + + LH +        ++  +          A 
Sbjct: 7   LDSLVPGKRPEETTVVVAMSGGVDSSVVAVLLHKMGYKVIGATMQLYS-------SPNAS 59

Query: 68  --------DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA-----AARE---------- 104
                    ++     V +     H V++++    +  +        A E          
Sbjct: 60  SGKSCCGNADIYDAKKVAASFGFPHYVLNYEEVFRKEVIEDFVNSYKAGETPIPCIKCNQ 119

Query: 105 -ARYALISEHAKTINATLIMTAH 126
             ++  + + A+TI   ++ T H
Sbjct: 120 TVKFRDMLKMARTIGGDVVATGH 142


>gi|312962890|ref|ZP_07777377.1| GMP synthase [Pseudomonas fluorescens WH6]
 gi|311282917|gb|EFQ61511.1| GMP synthase [Pseudomonas fluorescens WH6]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 31/191 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+    L E     
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLRLHEG---- 270

Query: 70  VRYV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTI 117
              V +     + +   V+     +     +A             R       ++  K  
Sbjct: 271 -EQVMAMFAENMGVK--VIRANAEEQFLNNLAGESDPEKKRKIIGRTFIDVFDAQSNKLD 327

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           N   +     + D +E+      +      +        +  ++NL +  P     ++++
Sbjct: 328 NIKYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEV 384

Query: 178 RSFLLQRNISW 188
           R   L+  + +
Sbjct: 385 RRLGLELGLPY 395


>gi|254448865|ref|ZP_05062321.1| GMP synthase [gamma proteobacterium HTCC5015]
 gi|198261555|gb|EDY85844.1| GMP synthase [gamma proteobacterium HTCC5015]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS  +   LH  + D      + + + VD+  LR    DE  
Sbjct: 221 IREQVGSDEVILGLSGGVDSSVVAAMLHKAIGD------QLTCVFVDNGLLR---LDEGD 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGL---MAAAREARY-------ALISEHAKTI-NA 119
            V +   + + I   V+                   + R         +  E A  +  A
Sbjct: 272 QVMATFAANMGI--RVIRVDAEDRFLTALKGEDDPEKKRKIIGNLFIDIFEEEASKLTTA 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  D+ L +  P     ++++R 
Sbjct: 330 DWLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEDMKLKLVEPLRELFKDEVRK 386

Query: 180 FLLQRNIS 187
             ++  + 
Sbjct: 387 IGVELGLP 394


>gi|126737635|ref|ZP_01753365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. SK209-2-6]
 gi|126721028|gb|EBA17732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. SK209-2-6]
          Length = 381

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 59/215 (27%), Gaps = 46/215 (21%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLY----DHG--AALAKKGACCAGI 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V       H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY-------DLNLWI 165
            AK + A  + T H           R   +   +            Y       +   ++
Sbjct: 132 TAKDLEADCMATGH--------YIQRMMGEQGPELHSAEDANRDQSYFLFSTTPEQLDYL 183

Query: 166 SRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
             P      ++  R    Q  ++  + P + D  F
Sbjct: 184 RFPLGHLPSKDATREMAAQYGLAVADKPDSQDICF 218


>gi|253996330|ref|YP_003048394.1| GMP synthase large subunit [Methylotenera mobilis JLW8]
 gi|253983009|gb|ACT47867.1| GMP synthase, large subunit [Methylotenera mobilis JLW8]
          Length = 535

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +++ V    +++ +SGG DS      +H  + D      + + + VDH L
Sbjct: 217 IKAQVGDEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDHGL 260


>gi|54024424|ref|YP_118666.1| sulfate adenylyltransferase subunit 2 [Nocardia farcinica IFM
           10152]
 gi|54015932|dbj|BAD57302.1| putative sulfate adenylyltransferase subunit 2 [Nocardia farcinica
           IFM 10152]
          Length = 310

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 24/186 (12%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSD 75
           +   +L+  SGG DS+ +L              + F  + +D  H       + + +   
Sbjct: 35  FERPVLL-FSGGKDSVVMLHLAAKAF---WPAPLPFPVLHIDTGHNF----DEVIEFRDR 86

Query: 76  VCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
              RL +   V   ++         +TG  A+    + A +    +      +      D
Sbjct: 87  TVERLGLRLLVGRVQDDIDAGRVVEETGPRASRNRLQTATLLRTIREGGFDAVFGGARRD 146

Query: 130 DQLETVYMRSQRDYAEKGMG--------LSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++      R        G          L  + +            P       DI S++
Sbjct: 147 EEKARAKERVFSFRDAYGQWEPRNQRPELWNLYNGRHRRGEHIRVFPLSNWTELDIWSYI 206

Query: 182 LQRNIS 187
               I 
Sbjct: 207 AAEGID 212


>gi|33860597|ref|NP_892158.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|44887936|sp|Q7V3N7|GUAA_PROMP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33633539|emb|CAE18496.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 528

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           ++  V    +L+A+SGG DS  L   L+  +  +
Sbjct: 218 IKQQVGDKRVLLALSGGVDSSTLAFLLNKAIGKK 251


>gi|152978287|ref|YP_001343916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus succinogenes 130Z]
 gi|205811095|sp|A6VLY4|MNMA_ACTSZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|150840010|gb|ABR73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Actinobacillus succinogenes 130Z]
          Length = 389

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 37/132 (28%), Gaps = 36/132 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS      L           +K               D+  Y        
Sbjct: 31  KVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADLA 80

Query: 74  --SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEHA 114
               VC +L I    +++                 A R          E ++ A +   A
Sbjct: 81  DAQAVCDKLGIRLHKINFATEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAA 140

Query: 115 KTINATLIMTAH 126
           + + A  I T H
Sbjct: 141 EDLGADYIATGH 152


>gi|239906291|ref|YP_002953032.1| hypothetical protein DMR_16550 [Desulfovibrio magneticus RS-1]
 gi|239796157|dbj|BAH75146.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 289

 Score = 43.0 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 33/194 (17%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE  R  +  L      ++A SGG DS  LL A    + +        +A+++D      
Sbjct: 16  IERYRRLLADLGGLQSAVLAFSGGLDSSFLLHAASRAMGE------GLTAVTLD--TPYA 67

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATL 121
            + E+   + +  RL + H V+                   ++A +A + E A       
Sbjct: 68  PRAEIAEAAALAGRLGVRHVVLPVPFPEALRDNPPERCYLCKKALFAKLLELAAGEGIAH 127

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRS 179
           ++     DD              +   GL  + +       L I  P L     + DIR+
Sbjct: 128 VLDGTNQDDL------------GDHRPGLRALAE-------LGIVSPLLSAGIGKADIRA 168

Query: 180 FLLQRNISWCEDPS 193
              Q  +   + PS
Sbjct: 169 LSRQAGLPIWDKPS 182


>gi|197334330|ref|YP_002155395.1| gmp synthase (glutamine-hydrolyzing) [Vibrio fischeri MJ11]
 gi|226739763|sp|B5FAY1|GUAA_VIBFM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|197315820|gb|ACH65267.1| gmp synthase (glutamine-hydrolyzing) [Vibrio fischeri MJ11]
          Length = 517

 Score = 43.0 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + +  H  + D      K + + VD+  L
Sbjct: 204 SIIEDAVARIKEQVGDDEVILGLSGGVDSSVVAMLAHRAIGD------KLTCVFVDNGLL 257

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R   A   +       ++  +    V+ +          +  E +  +I           
Sbjct: 258 RLNEADQVMEM---FGNKFGLNIIHVNAEQRFLDALEGESDPEVKRKIIGHVFVDIFDEE 314

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLKNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|89901065|ref|YP_523536.1| GMP synthase [Rhodoferax ferrireducens T118]
 gi|122479092|sp|Q21W48|GUAA_RHOFD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|89345802|gb|ABD70005.1| GMP synthase (glutamine-hydrolyzing) [Rhodoferax ferrireducens
           T118]
          Length = 536

 Score = 43.0 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E+V   +R+ V    +++ +SGG DS      +H  + +      + + + VDH L
Sbjct: 215 EAVEQ-IRAQVGTDEVILGLSGGVDSSVAAALIHRAIGE------QLTCVFVDHGL 263


>gi|85711960|ref|ZP_01043014.1| Predicted PP-loop superfamily ATPase [Idiomarina baltica OS145]
 gi|85694146|gb|EAQ32090.1| Predicted PP-loop superfamily ATPase [Idiomarina baltica OS145]
          Length = 219

 Score = 43.0 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS      L+  L        + SA+S ++  R   + +V   + VC  L
Sbjct: 4  KVVVIYSGGMDS---FTVLNRALEQ----GHEVSALSFNYGQRHVRELDVA--AKVCEAL 54

Query: 81 RIAHSVVSWKN 91
           I H +V    
Sbjct: 55 NIPHKIVDITA 65


>gi|144899782|emb|CAM76646.1| Asparagine synthase, glutamine-hydrolyzing [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 625

 Score = 43.0 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 16/91 (17%)

Query: 1   MFLSPI-ESVRFFVRSLVYPAHILVA--VSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
            F+  + ++VR  +RS V      V   +SGG DS  +      +       K    A  
Sbjct: 244 QFMDLLTDAVRLRLRSDVP-----VGIFLSGGMDSSAVAAIAAGL------DKASTKAFC 292

Query: 58  VDHCLRETAKDEVRYVSDVCSRLRIAHSVVS 88
           V     E + DE  +   V   L I  +++ 
Sbjct: 293 V--GFHEQSYDESVHAQAVADHLGIPLTILE 321


>gi|86604778|ref|YP_473541.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. JA-3-3Ab]
 gi|123508144|sp|Q2JY34|MNMA_SYNJA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86553320|gb|ABC98278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Synechococcus sp. JA-3-3Ab]
          Length = 370

 Score = 43.0 bits (100), Expect = 0.092,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 23/100 (23%)

Query: 1  MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHS---------VLSDRSFGKI 51
          M  SP   V   +        I+ A+SGG DS  +   LH          +   R  G+ 
Sbjct: 1  MATSPYPLVAPEIAGSPSRPRIVAALSGGVDSSTVAAILHEQGYAVEGVTLWLMRGKGQC 60

Query: 52 KFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN 91
              + VD              + +C +L I H +V  + 
Sbjct: 61 CTDGL-VD-------------AAAICEQLGIPHHIVDSRE 86


>gi|329896815|ref|ZP_08271731.1| GMP synthase (glutamine-hydrolyzing) [gamma proteobacterium
           IMCC3088]
 gi|328921570|gb|EGG28950.1| GMP synthase (glutamine-hydrolyzing) [gamma proteobacterium
           IMCC3088]
          Length = 526

 Score = 43.0 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 25/197 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E     V++ V    +L+ +SGG DS  +   LH  + D      + + + VD+  L
Sbjct: 213 NIVEDAIARVKTQVGGDKVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALI-----S 111
           R    D+V   +     + +   V+                   A R+    +       
Sbjct: 267 RLNEGDQVM--AMFAQNMGVK--VIRADAEDLFLGKLEGVSDPEAKRKIIGNMFIEVFDQ 322

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           E  K  +   +     + D +E+             +        +  D+ + +  P   
Sbjct: 323 EATKLTDVNWLAQGTIYPDVIES---AGAETGKAHVIKSHHNVGGLPEDMKMSLVEPLRE 379

Query: 172 CRREDIRSFLLQRNISW 188
             ++++R   L+  + +
Sbjct: 380 LFKDEVRKIGLELGLPY 396


>gi|303243686|ref|ZP_07330027.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
 gi|302485928|gb|EFL48851.1| PP-loop domain protein [Methanothermococcus okinawensis IH1]
          Length = 306

 Score = 43.0 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 19/122 (15%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVR 71
           ++L    + ++A SGG DS+  L  L          K+    I+VD  +     +K  ++
Sbjct: 73  KNLNKKYNCILAFSGGKDSVVALYLLLK------DFKVNPLCITVDNKYM----SKGALK 122

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMT 124
              ++   L +   V++   ++                 E     I + AK +N   I+T
Sbjct: 123 NCYNITRYLNVDWIVLNRDYTELFKDSILRGESPCRRCSELIMREIWKMAKMLNIDKIIT 182

Query: 125 AH 126
            H
Sbjct: 183 GH 184


>gi|119469470|ref|ZP_01612374.1| putative regulator protein [Alteromonadales bacterium TW-7]
 gi|119447005|gb|EAW28275.1| putative regulator protein [Alteromonadales bacterium TW-7]
          Length = 218

 Score = 43.0 bits (100), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 21 HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++V  SGG DS   L  AL               A+S D+  R     E++  + VC +
Sbjct: 4  KVVVIYSGGMDSFTVLNKALQQ--------GHDVYALSFDYGQRHV--KELKVAAQVCEK 53

Query: 80 LRIAHSVVSWKN 91
          L + H +V    
Sbjct: 54 LNVPHKIVDISA 65


>gi|37526660|ref|NP_930004.1| hypothetical protein plu2770 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786092|emb|CAE15144.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 510

 Score = 43.0 bits (100), Expect = 0.094,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS  +L                 +AIS    L   +KD +      C+   I H 
Sbjct: 235 FSGGIDSTIVLYLAKKY-------HHDITAISF--GL-PGSKD-IEIAQRYCTENNIKHI 283

Query: 86  VVSWKNSKPQTGLMAA 101
           + ++   +    +  A
Sbjct: 284 IYTFTQEELINNIQDA 299


>gi|326564201|gb|EGE14437.1| ExsB family protein [Moraxella catarrhalis 12P80B1]
 gi|326565800|gb|EGE15962.1| ExsB family protein [Moraxella catarrhalis BC1]
 gi|326571136|gb|EGE21160.1| ExsB family protein [Moraxella catarrhalis BC7]
 gi|326575674|gb|EGE25597.1| ExsB family protein [Moraxella catarrhalis CO72]
 gi|326577140|gb|EGE27034.1| ExsB family protein [Moraxella catarrhalis O35E]
          Length = 232

 Score = 43.0 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V  SGG DS   L    S            +A+S  +  R ++  E+    ++  +L +
Sbjct: 8  VVLFSGGLDSTTCLYWAKSQFK-------TVTAVSFCYGQRHSS--ELHAAQNIAKKLSV 58

Query: 83 AHSVVSWKNSKPQTGL 98
           H V+    +K     
Sbjct: 59 RHHVIDIDIAKLGGSA 74


>gi|296113092|ref|YP_003627030.1| ExsB family protein [Moraxella catarrhalis RH4]
 gi|295920786|gb|ADG61137.1| ExsB family protein [Moraxella catarrhalis RH4]
 gi|326560085|gb|EGE10475.1| ExsB family protein [Moraxella catarrhalis 46P47B1]
 gi|326560468|gb|EGE10850.1| ExsB family protein [Moraxella catarrhalis 7169]
 gi|326561671|gb|EGE12008.1| ExsB family protein [Moraxella catarrhalis 103P14B1]
 gi|326570453|gb|EGE20493.1| ExsB family protein [Moraxella catarrhalis BC8]
 gi|326573430|gb|EGE23398.1| ExsB family protein [Moraxella catarrhalis 101P30B1]
          Length = 232

 Score = 43.0 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V  SGG DS   L    S            +A+S  +  R ++  E+    ++  +L +
Sbjct: 8  VVLFSGGLDSTTCLYWAKSQFK-------TVTAVSFCYGQRHSS--ELHAAQNIAKKLSV 58

Query: 83 AHSVVSWKNSKPQTGL 98
           H V+    +K     
Sbjct: 59 RHHVIDIDIAKLGGSA 74


>gi|315636122|ref|ZP_07891376.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
 gi|315479483|gb|EFU70162.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
          Length = 373

 Score = 43.0 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 69/208 (33%), Gaps = 59/208 (28%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DS  L   +  +        ++   + +D      ++  V+ + +V + L +
Sbjct: 72  ILGLSGGVDSTYLAHLVVEL-------GLRPLVVHIDTGW--NSEIAVQNIENVVNILNL 122

Query: 83  AH--SVVSWKNSK----------------PQTGLMAAAREARYALISEHAKTINATLIMT 124
                V+ W+  K                PQ  +  A       L+++ AK      I++
Sbjct: 123 DLHTHVIDWEEMKDLQLAFFKASIPDCDIPQDHVFPA-------LLNKIAKQNKIKHIIS 175

Query: 125 AHT--------------FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP-- 168
            H                +D   T  +   + + +  +                   P  
Sbjct: 176 GHNVVTEYILPRNWSYDSNDL--THLLDVHKKFGKIPLKKYPRYSLFDRIFTYRWIFPVK 233

Query: 169 ------FLRCRREDIRSFLLQRNISWCE 190
                 ++   +E+I+ F+ ++ ++W +
Sbjct: 234 SHRFLYYVPYDKEEIKKFIQEK-LAWRD 260


>gi|308049940|ref|YP_003913506.1| preQ(0) biosynthesis protein QueC [Ferrimonas balearica DSM 9799]
 gi|307632130|gb|ADN76432.1| preQ(0) biosynthesis protein QueC [Ferrimonas balearica DSM 9799]
          Length = 233

 Score = 43.0 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +  AI+ D+  R     E+     + + L
Sbjct: 8   VVV-FSGGQDSTTCLVQALTHYD--------EVHAITFDYGQRH--AQEIEVAKTLATEL 56

Query: 81  RIAHSVVSWKNSKPQTGLMAAARE 104
            +    V   +   +  + A  R+
Sbjct: 57  GVKAHKVMDVSLLGELAISALTRD 80


>gi|194290557|ref|YP_002006464.1| sulfate adenylyltransferase subunit 2 [Cupriavidus taiwanensis LMG
           19424]
 gi|193224392|emb|CAQ70403.1| ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase)
           [Cupriavidus taiwanensis LMG 19424]
          Length = 321

 Score = 43.0 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H   E      + V+++ +RL +
Sbjct: 50  FSGGKDSIVMLHLALKAFRLGDRKIELPFPLVHIDTGHNYPEVITFRDQRVAELGARLVV 109

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  +      +M     D
Sbjct: 110 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIEAHKFDALMGGARRD 157


>gi|121607299|ref|YP_995106.1| tRNA-specific 2-thiouridylase MnmA [Verminephrobacter eiseniae
           EF01-2]
 gi|166991125|sp|A1WEN1|MNMA_VEREI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|121551939|gb|ABM56088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Verminephrobacter eiseniae EF01-2]
          Length = 370

 Score = 43.0 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 49/206 (23%), Gaps = 56/206 (27%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     +     +K               D+  Y     
Sbjct: 5   PKQRVVVGLSGGVDSAVTAYLLRQQGHEVVGIFMKNW----------EDDDDGGYCPSGT 54

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + I    V++     +       RE +                     +
Sbjct: 55  DFVDAAAVADVIGIEIEHVNFAADYKERVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLD 114

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
           HA  + A  I T H              R     G            D + ++ R     
Sbjct: 115 HALRLGAEKIATGH----------YAGVRRNPASGRFELLKGADPAKDQSYFLHRLDQRQ 164

Query: 168 ------PFLRCRREDIRSFLLQRNIS 187
                 P    R+ ++R       + 
Sbjct: 165 LSRTLFPLGALRKTEVRRLAEDIGLP 190


>gi|328468976|gb|EGF39936.1| queuosine biosynthesis protein QueC [Vibrio parahaemolyticus
          10329]
          Length = 232

 Score = 43.0 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQKIAKDL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|94266278|ref|ZP_01289983.1| Glutamine amidotransferase class-I:GMP synthase-like [delta
           proteobacterium MLMS-1]
 gi|93453129|gb|EAT03600.1| Glutamine amidotransferase class-I:GMP synthase-like [delta
           proteobacterium MLMS-1]
          Length = 518

 Score = 43.0 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 62/187 (33%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +++ +SGG DS      +H  + +      +   + VD   LR    D+V 
Sbjct: 214 IKEQVGDDRVVLGLSGGVDSSVAAALIHRAIGE------QLVCVFVDTGLLRLGEGDQVM 267

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREAR------YALISEHAKTI-NAT 120
             +     + +   V+     +       G+     + R        +  E A  + N  
Sbjct: 268 --ATFAENMGVK--VIRVDAEERFMGALAGVEDPEAKRRVIGNMFITIFEEAAGELANTH 323

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +    + +        +   + L +  P     ++++R+ 
Sbjct: 324 WLAQGTIYPDVIES---AGGKTGKAQNIKSHHNVGGLPEQMQLKLLEPLRELFKDEVRAI 380

Query: 181 LLQRNIS 187
             +  + 
Sbjct: 381 GDELGLP 387


>gi|28898412|ref|NP_798017.1| queuosine biosynthesis protein QueC [Vibrio parahaemolyticus RIMD
          2210633]
 gi|260365145|ref|ZP_05777716.1| protein ExsB [Vibrio parahaemolyticus K5030]
 gi|260876574|ref|ZP_05888929.1| protein ExsB [Vibrio parahaemolyticus AN-5034]
 gi|260895067|ref|ZP_05903563.1| protein ExsB [Vibrio parahaemolyticus Peru-466]
 gi|260900923|ref|ZP_05909318.1| protein ExsB [Vibrio parahaemolyticus AQ4037]
 gi|81727639|sp|Q87P80|QUEC_VIBPA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|28806629|dbj|BAC59901.1| exsB protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086022|gb|EFO35717.1| protein ExsB [Vibrio parahaemolyticus Peru-466]
 gi|308093579|gb|EFO43274.1| protein ExsB [Vibrio parahaemolyticus AN-5034]
 gi|308110776|gb|EFO48316.1| protein ExsB [Vibrio parahaemolyticus AQ4037]
 gi|308111509|gb|EFO49049.1| protein ExsB [Vibrio parahaemolyticus K5030]
          Length = 232

 Score = 43.0 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQKIAKDL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|299147036|ref|ZP_07040103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
 gi|298514921|gb|EFI38803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 3_1_23]
          Length = 384

 Score = 43.0 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 84/246 (34%), Gaps = 46/246 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS     A+  + +      + F    ++      + + +    ++  R
Sbjct: 5   KRVLLGMSGGTDSSV--AAMRLLEAGYEVIGVTFRFYELN-----GSTEYLEDARNLAER 57

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIM 123
           L I H     +    +  +        A R            ++ L+++ A  +    I 
Sbjct: 58  LGIRHITYDAREIFNKQIIDYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGVFYIA 117

Query: 124 TAH-TFDDQL-ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T H   + QL  T Y+    D  +     L G+   IL  +      P     + + R++
Sbjct: 118 TGHYAQNIQLNNTFYITYAADSDKDQTFFLWGLKQDILCRM----LLPMGNITKVEARAW 173

Query: 181 LLQRN----------ISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKV 230
             +            I  C  P      + R  ++ ++   +  AL  + +   + +  V
Sbjct: 174 AAEHGFRKVATKKDSIGVCFCP----MDY-RTFLKNWLAQ-NSEALAEEEQMMGENQALV 227

Query: 231 NNAVAM 236
            +  A+
Sbjct: 228 GDWQAL 233


>gi|254499274|ref|ZP_05111950.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Legionella drancourtii LLAP12]
 gi|254351518|gb|EET10377.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Legionella drancourtii LLAP12]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 62/186 (33%), Gaps = 20/186 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + D      +   + VD   LR    D+V 
Sbjct: 220 IREQVGTEKVLLGLSGGVDSSVVAALLHKAIGD------QLICVFVDTGLLRLNEADDVM 273

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALI----SEHAKTINATLI 122
                   + I    V+ +       K  T      +   +  I     E  K    + +
Sbjct: 274 --KMFGQHMGINIIAVNAEEKFLGALKGITCPEEKRKIIGHTFIEVFDEEAHKITGISWL 331

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+       + A   +        +   L L +  P     ++++RS  L
Sbjct: 332 AQGTIYPDVIESAATNI--NGASVVIKSHHNVGGLPETLKLKLLEPVRELFKDEVRSIGL 389

Query: 183 QRNISW 188
           +  +  
Sbjct: 390 ELGLPH 395


>gi|2921156|gb|AAC05081.1| aluminum resistance protein [Arthrobacter viscosus]
          Length = 187

 Score = 43.0 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 26 VSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
           SGG DS   L  A+            +  A++ D+  R +   E+     +   L I H
Sbjct: 26 FSGGQDSTTCLFWAMERFE--------EVEAVTFDYNQRHS--LEIECAQKIAKELGITH 75

Query: 85 SVVS 88
           ++ 
Sbjct: 76 HILD 79


>gi|57238122|ref|YP_179372.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni RM1221]
 gi|81353439|sp|Q5HTL3|GUAA_CAMJR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57166926|gb|AAW35705.1| GMP synthase [Campylobacter jejuni RM1221]
 gi|315058682|gb|ADT73011.1| GMP synthase (glutamine-hydrolyzing) [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 511

 Score = 43.0 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 23/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEVGNDKVLCAVSGGVDSSVVAALLASAIKE------QVIVVFVDNGLLRSREKEQVE 262

Query: 72  YVSDVCSRLRIAHSVVS---------WKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
           ++    + L I    +             + P+                E  K  +   +
Sbjct: 263 FMFK--NTLGIDLISIDASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYL 320

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+  + + +               +   +NL +  P     ++++R+  L
Sbjct: 321 AQGTLYTDIIESSVVGASKTIKS-----HHNVGGLPEKMNLKLIEPLKEIFKDEVRALGL 375

Query: 183 QRNIS 187
           +  +S
Sbjct: 376 ELGLS 380


>gi|332992297|gb|AEF02352.1| GMP synthase [Alteromonas sp. SN2]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 59/187 (31%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           ++  V    +++ +SGG DS    + LH  + +        + + VD+  LR   A   +
Sbjct: 221 IQKKVGDDRVILGLSGGVDSSVTAMLLHRAIGE------NLTCVFVDNGLLRLNEADQVM 274

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
                      +    V  +            P+    A   E       E  K  NA  
Sbjct: 275 EM---FGDHFGLNIIRVDAEERFLGRLKDIEDPELKRKAIGNEFVRVFDEEAGKLANAKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+             +        +  D+ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPEDMALGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|310764763|gb|ADP09713.1| GMP synthase [Erwinia sp. Ejp617]
          Length = 526

 Score = 43.0 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE     +R  V    +++ +SGG DS    + LH  + DR       + + VD+ L 
Sbjct: 213 KIIEDAVARLREQVGNDKVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +       +    V+ +N          +P+       R        E
Sbjct: 267 RLN---EAEQVMEMFGDHFGLNIIHVAAENRFLDALAGTDEPEAKRKIIGRVFVEVFDEE 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 324 ATKLSDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  +  
Sbjct: 381 FKDEVRKIGLELGLPH 396


>gi|301162405|emb|CBW21950.1| putative tRNA
          (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Bacteroides fragilis 638R]
          Length = 353

 Score = 43.0 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKF---SAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +SGG DS  ++  L       +   IK     A  +D     +A++++   + +  R  +
Sbjct: 7  LSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDGAEYMD----CSAEEDIELCTAIARRYGL 62

Query: 83 AHSVVSWKNS 92
          A  VV     
Sbjct: 63 ALEVVDLHRE 72


>gi|298385395|ref|ZP_06994953.1| phosphoadenosine phosphosulfate reductase [Bacteroides sp.
          1_1_14]
 gi|298261536|gb|EFI04402.1| phosphoadenosine phosphosulfate reductase [Bacteroides sp.
          1_1_14]
          Length = 301

 Score = 43.0 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSR 79
           I+V+ SGG DS   L     + +   +G  K  A+  D            +++SDVC +
Sbjct: 2  KIIVSFSGGKDSQACL-----IQATNKYGADKIEAVFCDTGWEHPETY---QHISDVCKQ 53

Query: 80 LRIAHSVVSWK 90
          L +   V+  K
Sbjct: 54 LDVKLVVLRSK 64


>gi|258515348|ref|YP_003191570.1| ExsB family protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779053|gb|ACV62947.1| ExsB family protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 268

 Score = 43.0 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 44/183 (24%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-SVDHCLRETA----KDEVRYVSDVCS 78
           VA SGG+DS  LL  +       + G  K  A+ +V       +      E+    ++  
Sbjct: 24  VAFSGGTDSTLLLKMVAD-----TLGVDKVLAVTTV-------SPLLPAAELIEAKNLAK 71

Query: 79  RLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            + +AH  +S                    ++ RY+ + E A+     +I+     +D+ 
Sbjct: 72  NMGVAHLTLSTGELNNRDFIGNSRERCYLCKQIRYSKLLETAEIRGYDVILDGTNAEDE- 130

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRSFLLQRNISWCE 190
                            L         D  L +  P       + +IR       ++  +
Sbjct: 131 -----------------LDFRPGIRALDE-LGVKTPLREAGLSKAEIRMLAKTFGLNNWQ 172

Query: 191 DPS 193
            PS
Sbjct: 173 KPS 175


>gi|163736308|ref|ZP_02143727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis BS107]
 gi|161390178|gb|EDQ14528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis BS107]
          Length = 381

 Score = 43.0 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 61/221 (27%), Gaps = 52/221 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLY----DHG--AALAKKGACCAGI 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V       H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            A+ + A  + T H             QR     G  L    D          +   +  
Sbjct: 132 TARDLEADCMATGH-----------YIQRKDGPNGPELHSAEDANRDQSYFLFSTTPEQL 180

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P      ++  R    Q  ++  + P + D  F   
Sbjct: 181 DYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPN 221


>gi|88607947|ref|YP_505762.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Anaplasma phagocytophilum HZ]
 gi|88599010|gb|ABD44480.1| GMP synthase [Anaplasma phagocytophilum HZ]
          Length = 529

 Score = 43.0 bits (100), Expect = 0.098,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 72/194 (37%), Gaps = 41/194 (21%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++ A+SGG DS    + LH  + D      +   + VD   LR+    EV 
Sbjct: 218 IRRTVGNGVVVAAISGGVDSSVASVLLHRAIGD------QLKCVFVDTGLLRKG---EVE 268

Query: 72  YVSD-VCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARY-------ALISEHAKTIN 118
            V +    +L+++ S+VS      +  +          E R         +  + AK + 
Sbjct: 269 TVREFFVDKLKMSVSIVSAAFLFIERLRGVVDPE----EKRKIIGNTFIEVFEQEAKKLG 324

Query: 119 -ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCR 173
            A  +M    + D +E             G+G+          +  ++NL +  P     
Sbjct: 325 DAQFLMQGTIYPDVIE---------SGASGLGVKIKSHHNVGGLPENMNLSLVEPLRCLF 375

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 376 KDEVRALGSELGLP 389


>gi|332305742|ref|YP_004433593.1| exsB protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173071|gb|AEE22325.1| exsB protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 218

 Score = 43.0 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS  +L               +  A+S ++  R +   E+ Y S  C  L
Sbjct: 4  KVVVIFSGGMDSFTVLNMAVK-------DGYEVHALSFNYGQRHS--KELDYASRACKIL 54

Query: 81 RIAHSVVSWKNSKPQTG 97
           +AH ++         G
Sbjct: 55 GVAHKIIDISAINELIG 71


>gi|325283230|ref|YP_004255771.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP]
 gi|324315039|gb|ADY26154.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP]
          Length = 422

 Score = 43.0 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 32/195 (16%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
                +L A+SGG DS      L       V +   F        + D C    A  E R
Sbjct: 57  AAGTRVLCAMSGGVDSSVTAALLKDQGYSVVGAMMRFWPDDKRTETFDSCCSPDAAYEAR 116

Query: 72  YVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR----------EARYALISEHAK 115
            V     ++ +   ++ ++         P     A  R          + ++  + + AK
Sbjct: 117 RV---AEQVGVPFYLLDYREQFQQHIVGPFIEEYAKGRTPNPCVNCNTKVKFDELVKKAK 173

Query: 116 TINATLIMTAHT----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            +    + T H      +++ E  + R      ++   L G     L     +I  P   
Sbjct: 174 MLGCQYVATGHYVKRVVNERGEVEFWRGDDPRKDQTYFLWGTPREALP----YILFPVGE 229

Query: 172 CRREDIRSFLLQRNI 186
             +  +R    +R +
Sbjct: 230 LEKPRVREIAAERGL 244


>gi|302412447|ref|XP_003004056.1| GMP synthase [Verticillium albo-atrum VaMs.102]
 gi|261356632|gb|EEY19060.1| GMP synthase [Verticillium albo-atrum VaMs.102]
          Length = 543

 Score = 43.0 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 67/202 (33%), Gaps = 34/202 (16%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +R LV   A ++ AVSGG DS      +   + DR      F AI VD  L R     E 
Sbjct: 224 IRKLVGDSAQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAILVDTGLMRLN---EC 274

Query: 71  RYVSD-VCSRLRIAHSVVSWKN---SKPQTGLMAAA---------------REARYALIS 111
             V + +   L I  ++V       S+    L   A                  R    +
Sbjct: 275 PQVKESLAEHLGINLTIVDGSELFLSRLAGVLEPEAKRKIIGGTFIDLFEIEALRIEKEA 334

Query: 112 EHAKTINATLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPF 169
           EH             T   D +E++  +      +      G+       D  L +  P 
Sbjct: 335 EHTALAGKVEWFLQGTLYADLIESLSFKGPSATIKSHHNAGGLPARMQNGDAQLKLLEPL 394

Query: 170 LRCRREDIRSFLLQRNISWCED 191
               ++++RSF  Q  I   ED
Sbjct: 395 RELFKDEVRSFGRQLGIH--ED 414


>gi|257094501|ref|YP_003168142.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047025|gb|ACV36213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 366

 Score = 43.0 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 42/136 (30%), Gaps = 35/136 (25%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS- 74
           +     ++V +SGG DS    + L           +K               D   Y S 
Sbjct: 1   MNKGKTVVVGLSGGVDSSVAALLLKEQGWHVVGLFMKNW----------EDDDTDEYCSS 50

Query: 75  --------DVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALI 110
                    V  R+ I   VV++ +   +          AA R          E +++  
Sbjct: 51  RQDLVDVLSVADRIGIDVEVVNFASQYRERVFAHFLAEYAAGRTPNPDVLCNSEIKFSAF 110

Query: 111 SEHAKTINATLIMTAH 126
            EHA  I A  I T H
Sbjct: 111 LEHALKIGAERIATGH 126


>gi|255323971|ref|ZP_05365097.1| GMP synthase [Corynebacterium tuberculostearicum SK141]
 gi|255299151|gb|EET78442.1| GMP synthase [Corynebacterium tuberculostearicum SK141]
          Length = 524

 Score = 43.0 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 26/180 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR--YVSDVCSR 79
           +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   +++V   +V+   ++
Sbjct: 224 ICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGEREQVEKDFVASTGAK 277

Query: 80  L-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-------ATLIMTAHT 127
           L     R A        S P+    A   E   +     A  ++          ++    
Sbjct: 278 LVTADERAAFLEKLAGVSDPEAKRKAIGAEFIRSFERAVAGVLDDAPAGSTVDYLVQGTL 337

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + D +E+             +        +  D+   +  P     ++++R+   +  + 
Sbjct: 338 YPDVVES-----GGGDGTANIKSHHNVGGLPDDVEFKLVEPLRLLFKDEVRAVGRELGLP 392


>gi|237720472|ref|ZP_04550953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|293368878|ref|ZP_06615481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
 gi|229450223|gb|EEO56014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 2_2_4]
 gi|292636027|gb|EFF54516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides ovatus SD CMC 3f]
          Length = 385

 Score = 43.0 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 30/185 (16%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS     A+  + +      + F    ++      + + +    ++  R
Sbjct: 6   KRVLLGMSGGTDSSV--AAMRLLEAGYEVIGVTFRFYELN-----GSTEYLEDARNLAER 58

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIM 123
           L I H     +    +  +        A R            ++ L+++ A  +    I 
Sbjct: 59  LGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCILCNNYLKWPLLAKIADEMGVFYIA 118

Query: 124 TAH-TFDDQL-ETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
           T H   + QL  T Y+    D  +     L G+   IL  +      P     + + R +
Sbjct: 119 TGHYAQNIQLNNTFYITYAADSDKDQTFFLWGLKQDILCRM----LLPMGDITKVEARVW 174

Query: 181 LLQRN 185
             +  
Sbjct: 175 AAEHG 179


>gi|163741163|ref|ZP_02148555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385516|gb|EDQ09893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Phaeobacter gallaeciensis 2.10]
          Length = 381

 Score = 43.0 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 61/221 (27%), Gaps = 52/221 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLY----DHG--AALAKKGACCAGI 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V       H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            A+ + A  + T H             QR     G  L    D          +   +  
Sbjct: 132 TARDLEADCMATGH-----------YIQRKDGPNGPELHSAEDANRDQSYFLFSTTPEQL 180

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P      ++  R    Q  ++  + P + D  F   
Sbjct: 181 DYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPN 221


>gi|15896861|ref|NP_350210.1| PP-loop superfamily ATPase [Clostridium acetobutylicum ATCC 824]
 gi|81529172|sp|Q97D53|QUEC_CLOAB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|15026727|gb|AAK81550.1|AE007858_11 PP-loop superfamily ATPase, confers aluminum resistance
          [Clostridium acetobutylicum ATCC 824]
 gi|325511035|gb|ADZ22671.1| PP-loop superfamily ATPase, confers aluminum resistance
          [Clostridium acetobutylicum EA 2018]
          Length = 222

 Score = 43.0 bits (100), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 20/74 (27%)

Query: 22 ILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          ++V  SGG DS   L  A             +  A+S D    H L      E+    D+
Sbjct: 11 LVV-FSGGQDSTTCLFWAKKRYK--------EVVAVSFDYNQKHKL------ELECAKDI 55

Query: 77 CSRLRIAHSVVSWK 90
          C +  + H ++  K
Sbjct: 56 CKKHGVEHHILDMK 69


>gi|315304193|ref|ZP_07874562.1| argininosuccinate synthase [Listeria ivanovii FSL F6-596]
 gi|313627428|gb|EFR96192.1| argininosuccinate synthase [Listeria ivanovii FSL F6-596]
          Length = 404

 Score = 43.0 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 60/193 (31%), Gaps = 47/193 (24%)

Query: 19  PAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRETA- 66
              I++A SGG D S+           ++     V   ++   IK  AI+V       + 
Sbjct: 3   KEKIVLAYSGGLDTSVAIQWLVEAGYEVIACCLDVGEGKNLDFIKEKAITV-----GASQ 57

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                 +  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 58  SYTIDAKEEFAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARKEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + NI    D
Sbjct: 156 NYAQEHNIPVPID 168


>gi|284162667|ref|YP_003401290.1| argininosuccinate synthase [Archaeoglobus profundus DSM 5631]
 gi|284012664|gb|ADB58617.1| argininosuccinate synthase [Archaeoglobus profundus DSM 5631]
          Length = 394

 Score = 43.0 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 45/186 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + ++++ SGG D+   +  L        +G  +   ++VD   +    +++R   +   +
Sbjct: 2   SKVVLSYSGGLDTTVAIFLLKE-----KYGFDEVITVTVDIG-QPE--EDIRKAEERGKK 53

Query: 80  LRIAHSVVSWKNSKPQTGLM---------------AAAREARYALISEHAKTINATLIMT 124
               H  V  K    +  +                A AR      + E AK   A  I  
Sbjct: 54  YADKHYTVDAKKEFVEALMQLIKANGEYEGYVLGTALARPIIAEKVVEVAKKEGADAI-- 111

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDIRSFL 181
           AH                    G G   +  + + Y     +  P   L   RE    + 
Sbjct: 112 AH-----------------GCTGKGNDQLRFENVFYQYGFRVIAPMRELNLTREWEIEYA 154

Query: 182 LQRNIS 187
            ++ I 
Sbjct: 155 KEKGIE 160


>gi|269926813|ref|YP_003323436.1| ExsB family protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790473|gb|ACZ42614.1| ExsB family protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 278

 Score = 43.0 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 75/249 (30%), Gaps = 48/249 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E+++  +R +     +LVA SGG DS  L    + VL D++      S         
Sbjct: 5   DKLETLKSLLRDMDS---VLVAYSGGVDSTLLAAVAYEVLGDKAAAATAIS--------- 52

Query: 64  ETA------KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---SEHA 114
             +      K+       +  R  I        + +            +  L    S  A
Sbjct: 53  -ESLLEEEFKEAEENARKIGIRF-IPIHTEELSDPRYVANNPDRCYYCKSELFTKLSALA 110

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRC 172
           K     +++     DD                                L I  P      
Sbjct: 111 KQEGYAVVVDGFNLDD-------------------SHDYRPGHQAAKELGIRSPLAEAGL 151

Query: 173 RREDIRSFLLQRNISWCEDPS--NTDDR--FERVRVRRFVRDIDLHALYLKMKKFQDLRV 228
            + +IR     + +   + PS      R  +      + +R I    L L+   F++LRV
Sbjct: 152 TKAEIRQISKLKGLPTWDKPSMPCLSSRIPYGSSVTIKKLRQIGQSELALRSLGFRELRV 211

Query: 229 KVNNAVAML 237
           + +  VA +
Sbjct: 212 RHHGDVARI 220


>gi|254475742|ref|ZP_05089128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria sp. R11]
 gi|214029985|gb|EEB70820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruegeria sp. R11]
          Length = 381

 Score = 43.0 bits (100), Expect = 0.100,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 61/221 (27%), Gaps = 52/221 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 18  PSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLY----DHG--AALAKKGACCAGI 71

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V       H V+ ++N      +   A                   ++  + E
Sbjct: 72  DIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 131

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCD----------TILYDLN 162
            A+ + A  + T H             QR     G  L    D          +   +  
Sbjct: 132 TARDLEADCMATGH-----------YIQRKMGAHGPELHSAEDANRDQSYFLFSTTPEQL 180

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRFERV 202
            ++  P      ++  R    Q  ++  + P + D  F   
Sbjct: 181 DYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPN 221


>gi|281345206|gb|EFB20790.1| hypothetical protein PANDA_020104 [Ailuropoda melanoleuca]
          Length = 83

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 14 RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
          R L   A + V  SGG DS  L   L  +        +    ++VD  +
Sbjct: 28 RLLPPGAVVAVGASGGKDSTVLAHVLRELTPRLG---VSLRLVAVDEGI 73


>gi|301107608|ref|XP_002902886.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora
           infestans T30-4]
 gi|262098004|gb|EEY56056.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora
           infestans T30-4]
          Length = 416

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 56/196 (28%), Gaps = 54/196 (27%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-------EVRY--VSDVC 77
           SGG DS    + L       +   +K            + ++       +  Y  V  VC
Sbjct: 2   SGGVDSSVAALLLKRQGYHVTGVYMK--------NWDPSDEEGESACPVDSEYVDVQKVC 53

Query: 78  SRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISEHAKTINATL 121
            +L I   +V+   S           G              RE ++   +E AK I A  
Sbjct: 54  EQLGIEAQMVNLVQSYWNQVFAPCLAGYEEGLTPNPDILCNREIKFKAFTEFAKQIGADC 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-----------PFL 170
           + T H            + R   + G       +    D + ++S            P  
Sbjct: 114 VATGH----------YAALRPAEKGGPPNLCAAEDESKDQSYFLSSVDGKAFANVLFPLG 163

Query: 171 RCRREDIRSFLLQRNI 186
             R+ ++R       +
Sbjct: 164 GMRKTEVRQIAESEGL 179


>gi|73542378|ref|YP_296898.1| sulfate adenylyltransferase subunit 2 [Ralstonia eutropha JMP134]
 gi|72119791|gb|AAZ62054.1| sulfate adenylyltransferase subunit 2 [Ralstonia eutropha JMP134]
          Length = 321

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H   E  +   + V+++ +RL +
Sbjct: 50  FSGGKDSIVMLHLALKAFRLGDRKIELPFPLVHIDTGHNYPEVIQFRDQRVAELGARLVV 109

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  +      +M     D
Sbjct: 110 GHVEDSMKRGTVRLRKETDSRNAAQAVTLLETIEAHQFDALMGGARRD 157


>gi|332970921|gb|EGK09897.1| transcription regulator ExsB [Psychrobacter sp. 1501(2011)]
          Length = 268

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V +SGG DS+  L    S  S       K +A+S ++  R  ++        +  +  +
Sbjct: 38  VVLLSGGLDSVTCLYWAKSRYS-------KVTAVSFNYGQRHNSELVAA--KTIAKQAGV 88

Query: 83  AHSVVSWKNSKPQTG 97
            H ++    ++    
Sbjct: 89  DHKIIDIDIAQLGGS 103


>gi|163846255|ref|YP_001634299.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524010|ref|YP_002568480.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus sp. Y-400-fl]
 gi|205811637|sp|A9WFH2|MNMA_CHLAA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|254811449|sp|B9LK98|MNMA_CHLSY RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|163667544|gb|ABY33910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroflexus aurantiacus J-10-fl]
 gi|222447889|gb|ACM52155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Chloroflexus sp. Y-400-fl]
          Length = 359

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 34/194 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH------CLRET---AKDEV 70
           A++LVA+SGG DS           +       + + +++         LRE+   A +  
Sbjct: 2   ANVLVAMSGGVDS-------SLAAALLLEAGHQVTGVTMHLWDDDEQGLRESLCCAAEAA 54

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHA 114
                VC+ L I   V +++    +                       R  ++  + + A
Sbjct: 55  ASARRVCALLGIPFYVFNYQREFRRHVIDYFIRAYTHGLTPNPCVECNRMIKFRALLDRA 114

Query: 115 KTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +T+    + T H     Q E    +  R    +    S M   +       +  P     
Sbjct: 115 RTLGFDAVATGHYARIIQGEDGRYQLWRAVDLEKDQ-SYMLHMLGQAELSRLIFPIGAYT 173

Query: 174 REDIRSFLLQRNIS 187
           + ++R     R + 
Sbjct: 174 KREVREMAAARGLP 187


>gi|330807661|ref|YP_004352123.1| transcription factor, ExsB family [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375769|gb|AEA67119.1| putative Transcription factor, ExsB family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
            V +     + +   V+     +     +A             R       ++  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEEQFLNNLAGESDPEKKRKIIGRTFIDVFDAQSNKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|296272040|ref|YP_003654671.1| exsB protein [Arcobacter nitrofigilis DSM 7299]
 gi|296096215|gb|ADG92165.1| exsB protein [Arcobacter nitrofigilis DSM 7299]
          Length = 223

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
          +SGG DS      L S ++       +  AI  ++  R   K E++   DVC  L + 
Sbjct: 9  LSGGMDST-----LSSYIAKNE--GYEIIAIHFNYGQRTE-KRELKAFRDVCENLNVK 58


>gi|254283294|ref|ZP_04958262.1| GMP synthase [gamma proteobacterium NOR51-B]
 gi|219679497|gb|EED35846.1| GMP synthase [gamma proteobacterium NOR51-B]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V    +L+ +SGG DS  +   LH  + D      + + + VD+  LR   K E  
Sbjct: 221 VREQVGGDKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLR---KQEGD 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNS-------KPQTGLMAAAREARYALIS----EHAKTINA 119
            V D     + +   V+            + ++   A  +      I     E  K  + 
Sbjct: 272 QVMDMFARNMGV--RVIRVDAEALFLGKLRGESDPEAKRKIIGNTFIEIFDDEAGKIQDV 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  D+ L +  P     ++++R 
Sbjct: 330 KWLAQGTIYPDVIES---AGGKTGKAHVIKSHHNVGGLPDDMALELVEPLRELFKDEVRQ 386

Query: 180 FLLQRNIS 187
             L+  + 
Sbjct: 387 IGLELGLP 394


>gi|220926736|ref|YP_002502038.1| asparagine synthase [Methylobacterium nodulans ORS 2060]
 gi|219951343|gb|ACL61735.1| asparagine synthase [Methylobacterium nodulans ORS 2060]
          Length = 470

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           R LV  A +   +SGG DS      + ++   R    + ++A+     L   + D +R  
Sbjct: 204 RRLVADAPLCCLISGGLDS----SLVLALAKARKPDVVAYTAV-----LDGESAD-LRAA 253

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             +C    +    V          L AAAR     + S+    I A  I  AH
Sbjct: 254 RRLCDEFEVPLVEVPVPAPTGDA-LEAAARAI--EIDSKAQVEIAALCIPLAH 303


>gi|149921054|ref|ZP_01909513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Plesiocystis pacifica SIR-1]
 gi|149818058|gb|EDM77515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Plesiocystis pacifica SIR-1]
          Length = 367

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 48/200 (24%)

Query: 21  HILVAVSGGSDSMG--------------LLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
            ++ A+SGG DS                L +AL+    +R                   +
Sbjct: 2   RVVCAMSGGVDSSVAAALMVEAGHEVIGLTMALYDAKGERKGRGGTCC-----------S 50

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------AR------YALI 110
             E+      C  L + H  V  +       +   ARE          AR      +  +
Sbjct: 51  PAEIDLARRACDLLGVPHYTVDERERFQAAVIDDFAREYLAGRTPNPCARCNEHVKFGPL 110

Query: 111 SEHAKTINATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
              A+ + A L++T H     D +      R      ++   L  M    L +    ++ 
Sbjct: 111 LARARALGAELLVTGHYAQIVDGEAGPALHRGVDASKDQSYFLFAMGRETLAE----VAF 166

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     +  +R    +  + 
Sbjct: 167 PLGAWSKAQVREKARELGMP 186


>gi|160875274|ref|YP_001554590.1| queuosine biosynthesis protein QueC [Shewanella baltica OS195]
 gi|189029312|sp|A9L185|QUEC_SHEB9 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|160860796|gb|ABX49330.1| exsB protein [Shewanella baltica OS195]
 gi|315267468|gb|ADT94321.1| exsB protein [Shewanella baltica OS678]
          Length = 240

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 45/191 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +   I+ D+  R   ++E+     +  RL
Sbjct: 15  VVV-FSGGQDSTTCLIQALTQYD--------EVHGITFDYGQRH--REEIEVAKSLAKRL 63

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA-------------------R----YALISEHAKTI 117
           +I    V       +  + A  R+A                   R      L   +A  +
Sbjct: 64  KITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVPGRNILFLTLAGIYAYQL 123

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  I+T        ET +      R+   K M  + +      D  L I  P +   + 
Sbjct: 124 GADAIITG-----VCETDFSGYPDCRNDFVKAMESALVQGM---DKQLKIITPLMWLNKA 175

Query: 176 DIRSFLLQRNI 186
              +   +   
Sbjct: 176 QTWALADKYQQ 186


>gi|325959954|ref|YP_004291420.1| hypothetical protein Metbo_2234 [Methanobacterium sp. AL-21]
 gi|325331386|gb|ADZ10448.1| Conserved hypothetical protein CHP00268 [Methanobacterium sp.
          AL-21]
          Length = 349

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 6  IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
          +E+    ++  +   +IL+A SGG+DS      +  + S+ S   +   A++VD+ +   
Sbjct: 3  VETKLQNLKDYLRDKNILIAFSGGADS----SLVAKIASEVSKESL---AVTVDNGVMPQ 55

Query: 66 AKDEVRYVSDVCSRLRIAHSVVS 88
            D +   + +   L I H VV 
Sbjct: 56 --DFIANATKIAGELGIKHRVVE 76


>gi|229592427|ref|YP_002874546.1| GMP synthase [Pseudomonas fluorescens SBW25]
 gi|259647687|sp|C3K1K0|GUAA_PSEFS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|229364293|emb|CAY52028.1| GMP synthase (glutamine-hydrolyzing) [Pseudomonas fluorescens
           SBW25]
          Length = 525

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 65/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+  LR     E  
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLLR---LHEGE 271

Query: 72  YV-SDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAKTINA 119
            V +     + +   V+           +A             R       ++  K  N 
Sbjct: 272 QVMAMFAENMGVK--VIRANAEDQFLNNLAGESDPEKKRKIIGRTFIDVFDAQSNKLDNI 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +  ++NL +  P     ++++R 
Sbjct: 330 KYLAQGTIYPDVIES---AGAKSGKAHVIKSHHNVGGLPEEMNLKLVEPLRELFKDEVRR 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 LGLELGLPY 395


>gi|152981022|ref|YP_001352063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janthinobacterium sp. Marseille]
 gi|205816857|sp|A6SUW6|MNMA_JANMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151281099|gb|ABR89509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 372

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 56/205 (27%), Gaps = 51/205 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               +++ +SGG DS      L     +     +K               D+  Y     
Sbjct: 2   AKKRVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + +    V++ +           RE +                     +
Sbjct: 52  DWIDAASVADVVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTFD--------D--QLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
           HA  + A +I T H           D  ++E   +++     ++   L  +    L    
Sbjct: 112 HAMLLGADMIATGHYARVREVTSGPDAGRVE--LLKAVDASKDQSYFLHRLNQAQLAKT- 168

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
                P    R+ ++R    Q  + 
Sbjct: 169 ---LFPLGEIRKTEVRKIAEQLKLP 190


>gi|313679249|ref|YP_004056988.1| nh(3)-dependent nad(+) synthetase [Oceanithermus profundus DSM
           14977]
 gi|313151964|gb|ADR35815.1| NH(3)-dependent NAD(+) synthetase [Oceanithermus profundus DSM
           14977]
          Length = 283

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 23/113 (20%)

Query: 7   ESVRFFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
            ++  F+R  +     A  +VA SGG DS   L       + R+ G     A+S+ H  R
Sbjct: 22  AALERFIREELAQRGYAKAVVAASGGVDSSVTLAL-----AARALGPENVHALSLPH--R 74

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWK-------------NSKPQTGLMAAAR 103
           +++ + V +      R  +A   V                  + +  +MA AR
Sbjct: 75  DSSPESVAHARLAAERFGVALETVDITPMVEGYAAQTPDLTPRRKGNVMARAR 127


>gi|254228267|ref|ZP_04921696.1| ExsB protein [Vibrio sp. Ex25]
 gi|262394170|ref|YP_003286024.1| queuosine Biosynthesis QueC ATPase [Vibrio sp. Ex25]
 gi|151939340|gb|EDN58169.1| ExsB protein [Vibrio sp. Ex25]
 gi|262337764|gb|ACY51559.1| queuosine Biosynthesis QueC ATPase [Vibrio sp. Ex25]
          Length = 231

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+    ++   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAQNIAKDL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|71019933|ref|XP_760197.1| hypothetical protein UM04050.1 [Ustilago maydis 521]
 gi|74701087|sp|Q4P763|GUAA_USTMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46099742|gb|EAK84975.1| hypothetical protein UM04050.1 [Ustilago maydis 521]
          Length = 543

 Score = 43.0 bits (100), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I+     +R +V P   +L A+SGG DS      +H  + DR      F A+ VD+  
Sbjct: 209 TFIDKEIKRIREIVGPKGQVLGAISGGVDSSVAAKLMHEAIGDR------FHAVMVDNGV 262

Query: 62  LRETAKDEVRYV-SDVCSRLRIAHSVVS 88
           LR     E   V   +   L +  +VV 
Sbjct: 263 LRTN---EAAQVYEMLSKDLGVNLTVVD 287


>gi|149199461|ref|ZP_01876496.1| hypothetical protein LNTAR_01367 [Lentisphaera araneosa HTCC2155]
 gi|149137396|gb|EDM25814.1| hypothetical protein LNTAR_01367 [Lentisphaera araneosa HTCC2155]
          Length = 265

 Score = 43.0 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 40/197 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M     E +    + L     + +A SGG DS  L    +  +S     K++        
Sbjct: 1   MNKELTEKLLQVKQELQSLDSLAIAYSGGVDSSLLAALAYEFISP---EKVELIIA---- 53

Query: 61  CLRETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL------I 110
                +    + E++    +        +++             +     Y        +
Sbjct: 54  ----DSPSIPRSELKEAKALAEERNWDLTIIYTHEIDNPNYQENSGDRCYYCKSELFSEM 109

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           S +AK  +   +      DD                   LS             +  P  
Sbjct: 110 SAYAKEKDIRTLAYGAILDD-------------------LSDHRPGAKAAAEHAVIAPLQ 150

Query: 171 RCRREDIRSFLLQRNIS 187
              +E+IR    +R++ 
Sbjct: 151 ILSKEEIRELSRERDLP 167


>gi|52549269|gb|AAU83118.1| argininosuccinate synthase [uncultured archaeon GZfos26F9]
          Length = 388

 Score = 43.0 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 56/186 (30%), Gaps = 46/186 (24%)

Query: 20  AHILVAVSGGSD-SMG--LLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV-RYVSD 75
             +++A SGG D S+   LL           +G  +  A++VD    E    E     + 
Sbjct: 2   KKVVLAYSGGLDTSVCIPLL--------KEHYGYDEVIAVTVDVGQPEDDIKEAKERGAK 53

Query: 76  VCSRLR-IAHSVVSWKNS-----KPQTGLM------AAAREARYALISEHAKTINATLIM 123
           +C   R I       ++      K            A AR      + E A+   A    
Sbjct: 54  LCDSYREIDAKEEFVRDYIFPLIKANGSYEGYVLGTAIARPLIAKHVVEVAREEKAD--A 111

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDIRSF 180
            AH                    G G   +  D +    +L +  P   L   R + R +
Sbjct: 112 VAH-----------------GCTGKGNDQLRFDAVFRTTDLDVVAPMRELSLTRVEERKY 154

Query: 181 LLQRNI 186
             +  I
Sbjct: 155 AAEHGI 160


>gi|16078436|ref|NP_389255.1| pre-queuosine 0 synthase [Bacillus subtilis subsp. subtilis str.
          168]
 gi|221309236|ref|ZP_03591083.1| hypothetical protein Bsubs1_07596 [Bacillus subtilis subsp.
          subtilis str. 168]
 gi|221313564|ref|ZP_03595369.1| hypothetical protein BsubsN3_07537 [Bacillus subtilis subsp.
          subtilis str. NCIB 3610]
 gi|221318486|ref|ZP_03599780.1| hypothetical protein BsubsJ_07471 [Bacillus subtilis subsp.
          subtilis str. JH642]
 gi|221322759|ref|ZP_03604053.1| hypothetical protein BsubsS_07577 [Bacillus subtilis subsp.
          subtilis str. SMY]
 gi|81341924|sp|O31675|QUEC_BACSU RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189339604|pdb|3BL5|A Chain A, Crystal Structure Of Quec From Bacillus Subtilis: An
          Enzyme Involved In Preq1 Biosynthesis
 gi|189339605|pdb|3BL5|B Chain B, Crystal Structure Of Quec From Bacillus Subtilis: An
          Enzyme Involved In Preq1 Biosynthesis
 gi|189339606|pdb|3BL5|C Chain C, Crystal Structure Of Quec From Bacillus Subtilis: An
          Enzyme Involved In Preq1 Biosynthesis
 gi|189339607|pdb|3BL5|D Chain D, Crystal Structure Of Quec From Bacillus Subtilis: An
          Enzyme Involved In Preq1 Biosynthesis
 gi|189339608|pdb|3BL5|E Chain E, Crystal Structure Of Quec From Bacillus Subtilis: An
          Enzyme Involved In Preq1 Biosynthesis
 gi|189339609|pdb|3BL5|F Chain F, Crystal Structure Of Quec From Bacillus Subtilis: An
          Enzyme Involved In Preq1 Biosynthesis
 gi|2633743|emb|CAB13245.1| pre-queuosine 0 synthase [Bacillus subtilis subsp. subtilis str.
          168]
          Length = 219

 Score = 43.0 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   LL AL            +   ++  +  R +   EV     +  +L
Sbjct: 7  IVV-FSGGQDSTTCLLWALKEFE--------EVETVTFHYNQRHS--QEVEVAKSIAEKL 55

Query: 81 RIAHSVVS 88
           + + ++ 
Sbjct: 56 GVKNHLLD 63


>gi|329954114|ref|ZP_08295209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
 gi|328528091|gb|EGF55071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides clarus YIT 12056]
          Length = 350

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 56/202 (27%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     +L+ +SGG+DS    + L     + +    +F            A  +  Y+ D
Sbjct: 1   MNSKERVLLGMSGGTDSSVTAMKLQEAGYEVTGVTFRFY----------EADGKAEYLED 50

Query: 76  ---VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------------AL 109
              +  RL I H +   +    +       R  RY                        L
Sbjct: 51  ARTLADRLGIEHIIYDARKLFRE-------RIIRYFIDEYLAGHTPVPCILCNNELKWKL 103

Query: 110 ISEHAKTINATLIMTAHT-----FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNL 163
           ++E A       I T H       +D   T Y+    D  +     L G+   IL  +  
Sbjct: 104 LAEIADEKGIYWISTGHYVRKLLLED---TYYIAPAADRDKDQTFFLWGLKQDILKRM-- 158

Query: 164 WISRPFLRCRREDIRSFLLQRN 185
               P     +E+ R++   R 
Sbjct: 159 --LLPMGDMTKEEARAYAAGRG 178


>gi|315925181|ref|ZP_07921397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621552|gb|EFV01517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 367

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 55/201 (27%), Gaps = 53/201 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYVS 74
            I+V +SGG DS    + L     D      +++ +   + +        TA ++   V 
Sbjct: 2   RIVVGMSGGVDSSVAALQLKRAGHDVIGIFMKNWDETDENGVC-------TATEDYEDVK 54

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------------------------ALI 110
            V   L I +  V+++            R   Y                        A +
Sbjct: 55  RVSEALAIPYYTVNFEK-------EYQDRVFAYFLAEYKRGRTPNPDVLCNKEIKFKAFM 107

Query: 111 SEHAKTINATLIMTAHTF---DDQLETVYMRSQRD--YAEKGMGLSGMCDTILYDLNLWI 165
               K   A  + T H      D   +   R  +     +              +  L+ 
Sbjct: 108 DYAMKVAGADKLATGHYARIDRDPA-SGVFRMLKGIDTGKDQTYFLCQLGQAQLEKTLF- 165

Query: 166 SRPFLRCRREDIRSFLLQRNI 186
             P     + ++R      ++
Sbjct: 166 --PIGDLPKSEVRRLAEAHHL 184


>gi|313680731|ref|YP_004058470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanithermus profundus DSM 14977]
 gi|313153446|gb|ADR37297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Oceanithermus profundus DSM 14977]
          Length = 369

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 68/241 (28%), Gaps = 60/241 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--------------SAISVDHCLR 63
               +LVA+SGG DS      L     D     +KF              S  +      
Sbjct: 2   KKPRVLVAMSGGVDSSVAAALLVEQGYDVVGAMMKFWSDEELAESCNSESSCCT------ 55

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAR----------EARY 107
            TA  E  +V     +L I   ++ ++         P     AA R          + ++
Sbjct: 56  PTAALEAGWV---ARQLGIPFELLDYRETFDERIVTPFLEGYAAGRTPNPCVWCNTDVKF 112

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI---------- 157
             + EHA+ I A  + T H             +R     G+ L    D            
Sbjct: 113 DALLEHARAIGAEYVATGH-----------YVRRVEGPAGVELWRGGDAAKDQTYFLWGT 161

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALY 217
                  +  P     +  +R     R +     P + +  F R  +R F+         
Sbjct: 162 PRAALPHLLFPVGHLEKPAVRRLAEARGLITARKPESQNICFVRGSLRDFLAKHIPSEPG 221

Query: 218 L 218
            
Sbjct: 222 P 222


>gi|150021480|ref|YP_001306834.1| ExsB family protein [Thermosipho melanesiensis BI429]
 gi|149794001|gb|ABR31449.1| ExsB family protein [Thermosipho melanesiensis BI429]
          Length = 342

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 6  IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS 54
          I  +R  V+SL     ++VA SGG DS    I     L  R+   +   
Sbjct: 11 INEIRETVKSL-KKDKLIVAFSGGLDSTVTAILCREALGPRNVELVNVV 58


>gi|119505204|ref|ZP_01627279.1| GMP synthase (glutamine-hydrolyzing) [marine gamma proteobacterium
           HTCC2080]
 gi|119458895|gb|EAW39995.1| GMP synthase (glutamine-hydrolyzing) [marine gamma proteobacterium
           HTCC2080]
          Length = 525

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 27/197 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E     VR+ V    +L+ +SGG DS  +   LH  + D      + + + VD+  L
Sbjct: 212 NIVEDAIQRVRTQVGTDRVLLGLSGGVDSSVVAAMLHRAIGD------QLTCVFVDNGLL 265

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALI----- 110
           R    DE   V +     + +   V+                   A R+A          
Sbjct: 266 R---LDEGEQVMAMFAQNMGV--RVIRANAEARFLGKLKGVSDPEAKRKAIGNTFIEVFD 320

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            E  K      +     + D +E+      +      +        +  D+ L +  P  
Sbjct: 321 EEATKITGVKWLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPDDMALELVEPLR 377

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   L+  + 
Sbjct: 378 ELFKDEVRRIGLELGLP 394


>gi|116873527|ref|YP_850308.1| argininosuccinate synthase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466515|sp|A0AKJ7|ASSY_LISW6 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|116742405|emb|CAK21529.1| argininosuccinate synthase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 404

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 45/192 (23%)

Query: 19  PAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRE--- 64
              I++A SGG D S+           ++     V   ++   IK  AI+V     E   
Sbjct: 3   KEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAITV--GASESYT 60

Query: 65  -TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
             AK+E  +  D      IA    ++   K    + A +R      + E A+   A+ I 
Sbjct: 61  IDAKEE--FAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAIA 114

Query: 124 TAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIRS 179
              T   +DQ+                             +L +  P    +  RE+  +
Sbjct: 115 HGCTGKGNDQV------------------RFEVAIHALAPDLKVISPVRDWKWSREEEIN 156

Query: 180 FLLQRNISWCED 191
           +  + NI    D
Sbjct: 157 YAKEHNIPVPID 168


>gi|15896988|ref|NP_341593.1| transcription regulator (exsB) related protein [Sulfolobus
           solfataricus P2]
 gi|284173860|ref|ZP_06387829.1| transcription regulator (exsB) related protein [Sulfolobus
           solfataricus 98/2]
 gi|74543016|sp|Q981C9|QUEC_SULSO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|13813145|gb|AAK40383.1| Transcription regulator (exsB) related protein [Sulfolobus
           solfataricus P2]
 gi|261601641|gb|ACX91244.1| exsB protein [Sulfolobus solfataricus 98/2]
          Length = 464

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 56/190 (29%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           ++VA SGG DS     A   +L +      + + I  ++   +  + E   V  +   L+
Sbjct: 245 LVVA-SGGLDSTV---AATKLLRE----GHEVTLIHFNYH-HKAEEKEREAVRKIAEYLQ 295

Query: 82  IAHSVVS-------------------WKNSKPQTGLMAA-----AREARYALIS---EHA 114
           I    ++                    K+ K + G   A     AR       S     A
Sbjct: 296 IPLLEINTDLFKIIGHATLIKGGGEIVKDRKGEEGAEFAHEWVPARNL--IFFSVSLAIA 353

Query: 115 KTINATLIMTAHTF-------DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           +      I +           D+++E  ++R     +    G          +  + I  
Sbjct: 354 EAYGYDAIASGINLEEAGAYPDNEME--FIRMLNKLSPYATG---------PNKRIEILM 402

Query: 168 PFLRCRREDI 177
           P     + +I
Sbjct: 403 PVGNLVKHEI 412


>gi|296122193|ref|YP_003629971.1| exsB protein [Planctomyces limnophilus DSM 3776]
 gi|296014533|gb|ADG67772.1| exsB protein [Planctomyces limnophilus DSM 3776]
          Length = 244

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 1  MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
          M L   ++     +  + P  +++ VSGG DS        ++L+          AIS D+
Sbjct: 1  MALDHQKASTAPPQKKISPPCVVL-VSGGLDS-------ATILAMAKAQGFSPFAISFDY 52

Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVV 87
            R   + E+     VC    +A  VV
Sbjct: 53 GQRH--RFELEAAEKVCQAQGVARHVV 77


>gi|308811570|ref|XP_003083093.1| tRNA (ISS) [Ostreococcus tauri]
 gi|116054971|emb|CAL57048.1| tRNA (ISS) [Ostreococcus tauri]
          Length = 431

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 50/200 (25%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA------KDEVRYVSD 75
           ++V +SGG DS     AL    +D +    K      D  L E A      +D++R  ++
Sbjct: 58  VVVGLSGGVDSAIAAWALKRCGADVTAATTKNW----D-GLNEDANEDCGYRDDLRSATE 112

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLM----AAA------------REARYALISEHAKT-IN 118
           +  ++ I  + + +              A A            R  ++  +  H    + 
Sbjct: 113 IARKIGIPLTEIDFTREYWNDVFEPYVKAFASGATPNPDLECNRSVKFGALLRHVTDVMG 172

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----------- 167
             L+ T H           R  R   E+   L G+ +T   D + +++            
Sbjct: 173 GDLLATGHYA---------RIDRGVGERVRLLRGVDET--KDQSYFLASVSGDALSKACF 221

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     + + R       + 
Sbjct: 222 PLGEMLKSETREAARALGLP 241


>gi|320100383|ref|YP_004175975.1| NH(3)-dependent NAD(+) synthetase [Desulfurococcus mucosus DSM
           2162]
 gi|319752735|gb|ADV64493.1| NH(3)-dependent NAD(+) synthetase [Desulfurococcus mucosus DSM
           2162]
          Length = 276

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 66/187 (35%), Gaps = 37/187 (19%)

Query: 4   SPIESVRFFVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
              E++  F++S    A     +V +SGG DS   L  L   L     G  K +A  +  
Sbjct: 16  DAAETIVGFLKSYFAGAGAEKAVVGLSGGLDSSVTLRLLVDAL-----GANKVTAAIM-- 68

Query: 61  CLRETAK----DEVRYVSDVCSRLRIAHSVVSWK------------NSKPQTGLMAAARE 104
                 +    ++ R  +++   L + + ++               ++  +         
Sbjct: 69  ---PDTRVTPPEDTRDAAELAGSLGVEYFIIPIDTVVDSYSVIPGFDAGNRLATGNLRAR 125

Query: 105 ARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG---MGLSGMCDTILYDL 161
            R  ++   A  +N  ++ T     D+ E + +     Y + G   + L+ +  T + +L
Sbjct: 126 IRMNILYYIANRLNGIVVGTG----DRSE-LLLGYFTKYGDGGVDVLPLACLYKTQVREL 180

Query: 162 NLWISRP 168
              +  P
Sbjct: 181 GRRLGLP 187


>gi|298675033|ref|YP_003726783.1| exsB protein [Methanohalobium evestigatum Z-7303]
 gi|298288021|gb|ADI73987.1| exsB protein [Methanohalobium evestigatum Z-7303]
          Length = 235

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +S G DS+  L         R    +K  AI  D+  R +AK E+ Y   +C+   I + 
Sbjct: 7  LSSGLDSVAALTI------AREITDVKL-AIIFDYGQR-SAKKEIEYSKKICTHFGIDYE 58

Query: 86 VVSWKNSKPQTG 97
          V+     +  T 
Sbjct: 59 VIKLDWLEKITN 70


>gi|292900165|ref|YP_003539534.1| GMP synthase [Erwinia amylovora ATCC 49946]
 gi|291200013|emb|CBJ47138.1| GMP synthase (glutamine-hydrolyzing) [Erwinia amylovora ATCC 49946]
          Length = 526

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  V    +++ +SGG DS    + LH  + DR       + + VD+  L
Sbjct: 213 KIIEDAVERLREQVGDDKVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +       +    V  +N          +P+       R        E
Sbjct: 267 RMN---EAEQVMEMFGDHFGLNIIHVPAENRFLDALAGTDEPEAKRKIIGRVFVEVFDEE 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 324 ATKLTEVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  +  
Sbjct: 381 FKDEVRKIGLELGLPH 396


>gi|156838576|ref|XP_001642991.1| hypothetical protein Kpol_413p8 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113576|gb|EDO15133.1| hypothetical protein Kpol_413p8 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 524

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 30/202 (14%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + IE+    +R LV P A ++ AVSGG DS      +   + DR      F AI VD+  
Sbjct: 206 NFIETEINRIRELVGPTAEVIGAVSGGVDSTVASKLMTEAIGDR------FHAILVDNGV 259

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNS--KPQTGLMAAAREAR------YALISE 112
           LR     E   V   +   L I  +VV   +       G+    R+ +        +   
Sbjct: 260 LRLN---EAENVKKTLIQGLGINLTVVDAADEFLDNLKGITDPERKRKIIGNTFIHVFER 316

Query: 113 HAKTIN------ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            A  I          ++    + D +E++  +      +    + G+ D    ++ L + 
Sbjct: 317 EAAKIQPKDGKEIQFLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLD----NMKLKLI 372

Query: 167 RPFLRCRREDIRSFLLQRNISW 188
            P     ++++R       IS 
Sbjct: 373 EPLRELFKDEVRHLGELLGISH 394


>gi|330954571|gb|EGH54831.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae Cit 7]
          Length = 357

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 54/186 (29%), Gaps = 38/186 (20%)

Query: 28  GGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYVSDVCSRL 80
           GG DS    + L           +K           E        A++++     VC ++
Sbjct: 1   GGVDSSVSAVLLMEQGYQVEGLFMK--------NWEEDDGTEYCTAREDLADAQAVCDKI 52

Query: 81  RIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTINATLIMT 124
            I     +     W N          A           RE ++    ++A  + A LI T
Sbjct: 53  GIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIAT 112

Query: 125 AH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
            H     D    T  ++      ++   L  +    +         P     + ++R+  
Sbjct: 113 GHYVRRRDIDGRTELLKGLDPNKDQSYFLHAVGGEQIART----LFPVGELEKPEVRAIA 168

Query: 182 LQRNIS 187
            +  ++
Sbjct: 169 EKHGLA 174


>gi|323456920|gb|EGB12786.1| hypothetical protein AURANDRAFT_60858 [Aureococcus anophagefferens]
          Length = 331

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKM 220
             + ++RP L   +ED+ +      + + +D + +     R R+R  +  +         
Sbjct: 8   QGVTVARPLLPLEKEDVYAVAHACGVPYFKDSTPSWS--TRGRLRNELLPLLRDVYGAGC 65

Query: 221 KKFQDLRVKVNNAVAMLIPKYLTVHMRSIIAIS-------QDILNIDSTLLFYLLRVSAA 273
            +        +++V  L    +    R+ +                +S   +       A
Sbjct: 66  PRHVLRLALDSDSVRDLADSRIFGSFRATVTTHTLGTRAELGAHRDESDFFWKTSMRDLA 125

Query: 274 ICGGQISLPGYRSMERVMLFLKSGKRGCVS 303
              G+  L   +++  ++  L+    G  +
Sbjct: 126 TRSGRGQL-SAKALGVLLARLRGDAGGGGT 154


>gi|42523552|ref|NP_968932.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Bdellovibrio bacteriovorus HD100]
 gi|50400325|sp|Q6MLD2|GUAA_BDEBA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|39575758|emb|CAE79925.1| GMP synthase [Bdellovibrio bacteriovorus HD100]
          Length = 506

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 63/191 (32%), Gaps = 26/191 (13%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAK 67
           ++     +    H+LV +SGG DS  +   L      ++ G  +   + VD+  LR+   
Sbjct: 199 IKEAQDKVGPTDHVLVGLSGGVDSTVVATLL-----TKALGAERVHCVFVDNGLLRKNEY 253

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTIN-- 118
           + V  +       RI  +V     S+        ++      +      I    K+ +  
Sbjct: 254 EAV--LESY---HRIGLNVRGVDASEEFLSALQGKSDPEDKRKTIGRVFIEVFDKSYDHK 308

Query: 119 --ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                +     + D +E+V            +        +   + L +  P     +++
Sbjct: 309 LPIKWLAQGTLYPDVIESV----SSVGGSVTIKSHHNVGGLPEKMKLGLVEPVRELFKDE 364

Query: 177 IRSFLLQRNIS 187
           +R+   Q  + 
Sbjct: 365 VRALGAQLGLP 375


>gi|88706901|ref|ZP_01104600.1| GMP synthase [Congregibacter litoralis KT71]
 gi|88698823|gb|EAQ95943.1| GMP synthase [Congregibacter litoralis KT71]
          Length = 524

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 61/199 (30%), Gaps = 29/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-- 61
             +E     VR  V   H+L+ +SGG DS  +   LH  + D      + + + VD+   
Sbjct: 211 RIVEDAIARVRETVGGDHVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGLL 264

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALI---- 110
            L E     +         + +   V+   +                 R+          
Sbjct: 265 RLHEG-DQVMEM---FARNMGVK--VIRSDSEALFLDRLAGVSDPEEKRKIIGNTFIEVF 318

Query: 111 -SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
             E AK      +     + D +E+      +      +        +  D+ L +  P 
Sbjct: 319 DEEAAKIEGVRWLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMALELVEPL 375

Query: 170 LRCRREDIRSFLLQRNISW 188
               ++++R   L+  +  
Sbjct: 376 RELFKDEVRKIGLELGLPH 394


>gi|57505254|ref|ZP_00371183.1| exsB protein [Campylobacter upsaliensis RM3195]
 gi|57016390|gb|EAL53175.1| exsB protein [Campylobacter upsaliensis RM3195]
          Length = 231

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 9/64 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AH 84
          +SGG DS      L + L+ +     +  A+  D+  R   K++  +   +C  L +  H
Sbjct: 8  ISGGMDST-----LCAYLAKKE--GFEIIALHFDYNQRTERKEKECF-HQICEHLGVLKH 59

Query: 85 SVVS 88
           V++
Sbjct: 60 YVLN 63


>gi|157813150|gb|ABV81320.1| putative GMP synthetase [Thulinius stephaniae]
          Length = 199

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R+ V    +++  SGG DS      L  VL        +   + +D+   R  
Sbjct: 31  EECMEYIRNAVKDKKVVLLASGGVDSTVCAALLXKVLPAD-----QLFVLHIDNGFMR-- 83

Query: 66  AKDEVRYVSDVCSRLRIA 83
            KDE   V  + ++L + 
Sbjct: 84  -KDESXNVVQLLTKLGLK 100


>gi|333000695|gb|EGK20271.1| GMP synthase [Shigella flexneri VA-6]
          Length = 525

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVLDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 AQKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|21231412|ref|NP_637329.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768534|ref|YP_243296.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991657|ref|YP_001903667.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|24638306|sp|Q8P9A1|MNMA_XANCP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|81305494|sp|Q4UUJ7|MNMA_XANC8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|205829008|sp|B0RT32|MNMA_XANCB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|21113079|gb|AAM41253.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573866|gb|AAY49276.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733417|emb|CAP51618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           methyltransferase [Xanthomonas campestris pv.
           campestris]
          Length = 378

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 49/195 (25%), Gaps = 47/195 (24%)

Query: 23  LVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +V VSGG DS      L           + +    G     A        E  + +   V
Sbjct: 7   IVGVSGGVDSSVAAWKLAQDGEPIAGLFMQNWADDGSGDCRA--------EDDRRDAVAV 58

Query: 74  SDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKTI 117
              C  L I           W           AA           RE ++    E A+ +
Sbjct: 59  ---CGVLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLEAAQAL 115

Query: 118 NATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  I T H         +     +R      ++   L  +  + L         P    
Sbjct: 116 GAERIATGHYARVAHLGGR--WRLLRGADRNKDQSYFLHQLGQSQLAAT----LFPIGEL 169

Query: 173 RREDIRSFLLQRNIS 187
            +  +R       + 
Sbjct: 170 EKSALRRIAQDAGLP 184


>gi|319779294|ref|YP_004130207.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Taylorella equigenitalis MCE9]
 gi|317109318|gb|ADU92064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Taylorella equigenitalis MCE9]
          Length = 371

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 35/133 (26%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---SD 75
              ++V +SGG DS      L     D     +K               D+  +     D
Sbjct: 3   KPKVVVGLSGGVDSSVSAYLLKEQGYDVLGVFMKNW----------EDDDDSEFCSTRQD 52

Query: 76  V------CSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISEH 113
                     L I    V++                 A R          E ++    ++
Sbjct: 53  WIDVVSVADTLGIDVDAVNFATEYKDRVFSDFLREYSAGRTPNPDVLCNAEIKFKAFLDY 112

Query: 114 AKTINATLIMTAH 126
           A    A  I T H
Sbjct: 113 AMNTGADFIATGH 125


>gi|254166659|ref|ZP_04873513.1| exsB protein [Aciduliprofundum boonei T469]
 gi|254167513|ref|ZP_04874365.1| exsB protein [Aciduliprofundum boonei T469]
 gi|289596334|ref|YP_003483030.1| exsB protein [Aciduliprofundum boonei T469]
 gi|197623776|gb|EDY36339.1| exsB protein [Aciduliprofundum boonei T469]
 gi|197624269|gb|EDY36830.1| exsB protein [Aciduliprofundum boonei T469]
 gi|289534121|gb|ADD08468.1| exsB protein [Aciduliprofundum boonei T469]
          Length = 237

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 23 LVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +V +SGG D S  L IAL               A+S D+  R +   E+     +     
Sbjct: 4  VVLLSGGLDSSTVLAIAL--------EMGYDVHALSFDYGQRHS--RELESAKKIARYFN 53

Query: 82 IAHSVVSWKNSKPQTGL 98
          + H ++     +     
Sbjct: 54 VPHKIIKIDLRQIGGSA 70


>gi|303232130|ref|ZP_07318833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302513236|gb|EFL55275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-049-V-Sch6]
          Length = 353

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 38/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY----VSDVC 77
           I VA+SGG DS   L A   +        I             T  DEV         +C
Sbjct: 5   IAVAMSGGVDSS--LTAAMLLKQGYKVFGITLWLWV-----SGTPYDEVPLAVTDAKKMC 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINATL 121
             L I H V+  ++   +  +    +E  Y                 L+   A  + AT 
Sbjct: 58  DFLGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATH 117

Query: 122 IMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRRE 175
           ++T H    +   +T      +               ++Y++N  I      P     + 
Sbjct: 118 MVTGHYAQVNYNEDTGLYELHKGVDPT-----KDQSYVMYNMNQRILSHLMFPLGGQCKT 172

Query: 176 DIRSFLLQRNIS 187
           + R    + ++ 
Sbjct: 173 ETRKLAAEYDLP 184


>gi|296272287|ref|YP_003654918.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096462|gb|ADG92412.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 346

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 41/200 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSDVC 77
             ++V +SGG DS      L     +     +K       H  R     E  + Y+ DV 
Sbjct: 5   KKVMVGMSGGIDSSVTAYMLQKEGYEVEGVYLKL------HN-RTDGYHEKNLEYIEDVA 57

Query: 78  SRLRIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATL 121
           + L I + ++   +                           ++ ++  + + AK   A+ 
Sbjct: 58  AFLGIKYHILDLADKFTAEVYDYFVDSYLEGTTPNPCVKCNKQIKFGAMLDFAKEHGASY 117

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           + T H      E  +  +     ++   LS +    L  +      P    ++EDI  F 
Sbjct: 118 LATGHYAKTDGE-FFYEADDKTKDQSYFLSQVPKEALPFMMF----PLSTYKKEDIVKFG 172

Query: 182 LQRNISWCEDPSNTDDRFER 201
            +            D  ++R
Sbjct: 173 AE-----------LDSAYKR 181


>gi|149917117|ref|ZP_01905617.1| hypothetical protein PPSIR1_39585 [Plesiocystis pacifica SIR-1]
 gi|149822033|gb|EDM81426.1| hypothetical protein PPSIR1_39585 [Plesiocystis pacifica SIR-1]
          Length = 277

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 39/173 (22%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLRIA 83
           A SGG DS  + +    V  +R+       A++    +  + A+ E  + S V + L + 
Sbjct: 30  AFSGGVDSTLVAVVAARVHGERAL------AVT---GVSPSLAESERAFASRVAAELGLR 80

Query: 84  HSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKTINATLIMTAHTFDDQLETVY 136
           H +V   +   + G  A A +  Y         +   AK      +++    DD      
Sbjct: 81  HRLVD-THEIERAGYQANAGDRCYHCKTELFERLVVLAKAEGFACVVSGDNLDD------ 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNIS 187
                        L G    +L      + +P +     ++ IR+      + 
Sbjct: 134 -------------LGGHRPGMLAAEENAVRKPLIEAELGKDQIRALARHLGLP 173


>gi|20093801|ref|NP_613648.1| GMP synthase subunit B [Methanopyrus kandleri AV19]
 gi|23821599|sp|Q8TYD7|GUAAB_METKA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|19886718|gb|AAM01578.1| PP-ATPase subunit of GMP synthase [Methanopyrus kandleri AV19]
          Length = 314

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 59/205 (28%), Gaps = 43/205 (20%)

Query: 1   MF--LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           MF     +E     +R  +     ++AVSGG DS    +  H  +            + V
Sbjct: 1   MFDPKKFVEEAIEELRREIGDRKAIIAVSGGVDSTTAAVLTHRAIGSH------LVCVFV 54

Query: 59  DHCL-RETA---------------KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
           DH   R+                    V    +    LR        +    +  +    
Sbjct: 55  DHGFMRKGEPERIRELLEEELGLNLRFVEAAEEFFEALRGVTDPEEKRKIIGEKFIE--- 111

Query: 103 REARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLN 162
                 +    A+   A +++      D +E          +E+G+        +   LN
Sbjct: 112 ------VFERIAEEEEAEVLVQGTIAPDIIE----------SERGIKSHHNVGGLPEKLN 155

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
           L +  P     ++++R       I 
Sbjct: 156 LDVVEPLRDLYKDEVREVARYLGIP 180


>gi|188997529|ref|YP_001931780.1| GMP synthase, large subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932596|gb|ACD67226.1| GMP synthase, large subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 511

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R +V     + A+SGG DS    + +H+ + D        + I VD+  LR+  +++V 
Sbjct: 208 IRKMVGDKKAICALSGGVDSSVAAVLVHNAIGD------NLTCIFVDNGLLRKGEREQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTI-----NATL 121
                     I+  VV  K+      K  T      R+    L  E  +       +   
Sbjct: 262 --KTFRDNFHISLIVVDAKDRFLKALKGITDPEQK-RKIIGNLFIEVFEEEAKKLKDVEY 318

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+V ++      +    + G+ +     +NL +  P     ++++R   
Sbjct: 319 LVQGTLYPDVIESVSVKGPSAVIKTHHNVGGLPE----RMNLKLIEPLRELFKDEVRELG 374

Query: 182 LQRNIS 187
            +  + 
Sbjct: 375 KELGLP 380


>gi|327400223|ref|YP_004341062.1| asparagine synthase [Archaeoglobus veneficus SNP6]
 gi|327315731|gb|AEA46347.1| asparagine synthase [Archaeoglobus veneficus SNP6]
          Length = 381

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +E +   + +   P +  +A SGG DS  LL AL+ V        I  +A        
Sbjct: 132 ELVERIEKSLENF-KPGNSCIAFSGGVDS-SLLAALYDVQL------INVTA-------- 175

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ 95
             +++E  +V      L     V  +   + +
Sbjct: 176 --SREEEEHVRYAAKLLGREIEVYRFGEQEVK 205


>gi|307545034|ref|YP_003897513.1| queuosine biosynthesis protein QueC [Halomonas elongata DSM 2581]
 gi|307217058|emb|CBV42328.1| K06920 queuosine biosynthesis protein QueC [Halomonas elongata
          DSM 2581]
          Length = 257

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
          A +++  SGG DS      LH  L +         A+S D+  R + + +V     VC  
Sbjct: 28 ATVVI-YSGGMDS---FTVLHRALGEGR----DVHALSFDYGQRHSRELDVA--RRVCRD 77

Query: 80 LRIAHSVVSWKN 91
          L + H VV  + 
Sbjct: 78 LEVPHQVVDIRA 89


>gi|325268591|ref|ZP_08135221.1| hypothetical protein HMPREF9141_0430 [Prevotella multiformis DSM
           16608]
 gi|324989119|gb|EGC21072.1| hypothetical protein HMPREF9141_0430 [Prevotella multiformis DSM
           16608]
          Length = 418

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 21/92 (22%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV------RYVSD 75
           + V+ SGG DS  LL     V  +R    ++F    +D+        E        YV  
Sbjct: 21  VYVSFSGGKDSGVLLELCAKVAEERG---VRFGIFHMDY--------EAQYKMTSEYVER 69

Query: 76  VCSRL----RIAHSVVSWKNSKPQTGLMAAAR 103
              R      I H  V +K +   +   +  R
Sbjct: 70  TLERFKNKADIYHVCVPFKVTTSTSMFQSYWR 101


>gi|309790493|ref|ZP_07685053.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oscillochloris trichoides DG6]
 gi|308227480|gb|EFO81148.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Oscillochloris trichoides DG6]
          Length = 513

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 64/199 (32%), Gaps = 28/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             +E VR     +     ++ A+SGG DS    + +H  + +R       + + VD+  L
Sbjct: 203 DAVERVR---EKVGEEGRVICALSGGVDSAVAALIIHRAIGER------LTCVFVDNGLL 253

Query: 63  RETAKDEVRYV-SDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISE 112
           R     E   V +       I    V  ++           P+        +       E
Sbjct: 254 RLG---EAEQVIATFREHFHIPLIAVDARDEFLSALENVADPEQKRKIIGEKFIRIFERE 310

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                 A  +     + D +E+     ++    K          +  D+ + +  P    
Sbjct: 311 ARALNGAQFLAQGTLYPDVIESSAPDRKKGVTIK---THHNVGGLPADMQMQLVEPLRYM 367

Query: 173 RREDIRSFLLQRNIS--WC 189
            ++++R+  L+  +   W 
Sbjct: 368 FKDEVRAAGLELGLPEEWV 386


>gi|171185568|ref|YP_001794487.1| phosphoadenosine phosphosulfate reductase [Thermoproteus
          neutrophilus V24Sta]
 gi|170934780|gb|ACB40041.1| phosphoadenosine phosphosulfate reductase [Thermoproteus
          neutrophilus V24Sta]
          Length = 392

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 1  MFLSPI--ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
          M L  +  E+   F  + +     ++A SGG DS    I  +     R+  K +   + 
Sbjct: 1  MSLDLLLSEAFEVFEEAALKYRTFVIAFSGGKDSTAAAILFYKWAKRRNGVKNRVVLLH 59


>gi|289435441|ref|YP_003465313.1| hypothetical protein lse_2080 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171685|emb|CBH28231.1| argG [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 404

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 47/193 (24%)

Query: 19  PAHILVAVSGGSD-SMG---LLIA-------LHSVLSDRSFGKIKFSAISVDHCLRETA- 66
              I++A SGG D S+    L+ A          V   ++   IK  AI+V       + 
Sbjct: 3   KEKIVLAYSGGLDTSVAIQWLVEAGYEIIACCLDVGEGKNLDFIKEKAITV-----GASQ 57

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                 +  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 58  SYTIDAKEEFAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARKEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + NI    D
Sbjct: 156 NYAQEHNIPVPID 168


>gi|332158432|ref|YP_004423711.1| hypothetical protein PNA2_0791 [Pyrococcus sp. NA2]
 gi|331033895|gb|AEC51707.1| hypothetical protein PNA2_0791 [Pyrococcus sp. NA2]
          Length = 217

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 34/167 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS      L+ +  +     I F  +           +  +Y  +    L   H 
Sbjct: 27  FSGGKDSSLAAWLLNKIGYEVRLVTITFGTL----------DNW-KYARETARILGFEHE 75

Query: 86  VVSWKNSKPQTGLMAA------AREARY---ALISEHAKTINATLIMTAHTFDDQLETVY 136
           V+    S     +          R  +Y     +   A   N   +      DD++   +
Sbjct: 76  VIELPKSILDRAVEMCIQDGKPGRAIQYIHEKALEFVASMENVERVSDGTRRDDRV--PF 133

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           +   +              ++    N+   RP L    + IR  +  
Sbjct: 134 LDLSK------------ARSLEDRFNVAYIRPLLGLGYKTIRELVNS 168


>gi|283954810|ref|ZP_06372326.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793650|gb|EFC32403.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 511

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +L AVSGG DS  +   L S + +      +   + VD+  LR   K++V 
Sbjct: 209 IREEIGNNKVLCAVSGGVDSSVVAALLASAIKE------QVIVVFVDNGLLRSGEKEQVE 262

Query: 72  Y 72
           +
Sbjct: 263 F 263


>gi|269929160|ref|YP_003321481.1| argininosuccinate synthase [Sphaerobacter thermophilus DSM 20745]
 gi|269788517|gb|ACZ40659.1| argininosuccinate synthase [Sphaerobacter thermophilus DSM 20745]
          Length = 409

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 65/199 (32%), Gaps = 44/199 (22%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRYVSDVC 77
            +++A SGG D S+ L          +     +  A + D   +  + +  E + ++   
Sbjct: 8   KVVLAYSGGLDTSVILAWI-------KEHYGCEVIAFTADVG-QGDSFEGLEAKALASGA 59

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS-------------EHAKTINATLIMT 124
           S+L +      +        L A A   R  L+              E A+   A  +  
Sbjct: 60  SKLYVRDLKEEFLTKYAFPTLRAGAVYERKYLLGTSFARPLIASHQVEIARLEGADAVAH 119

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+     R +  +      L  +     +DL            RE++  + +
Sbjct: 120 GCTGKGNDQV-----RFELTFQALAPDLKVIAPWRQWDLGG----------REELLEYAV 164

Query: 183 QRNISWCEDPSNTDDRFER 201
            R I   +  +N    + R
Sbjct: 165 ARGIPVSQSKTN---IYSR 180


>gi|170098654|ref|XP_001880546.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644984|gb|EDR09233.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 538

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVC 77
              ++ AVSGG DS      +H  + DR      F AI VD+  LR     E + V+++ 
Sbjct: 226 KGRVIGAVSGGVDSTVAAKLMHEAIGDR------FHAIMVDNGVLRLN---EAQQVNEML 276

Query: 78  SR-LRIAHSVVSWKN 91
           ++ L +  +VV   +
Sbjct: 277 NKDLGVNLTVVDASD 291


>gi|149376379|ref|ZP_01894142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter algicola DG893]
 gi|149359393|gb|EDM47854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Marinobacter algicola DG893]
          Length = 386

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 50/202 (24%), Gaps = 49/202 (24%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV--- 73
                ++V +SGG DS      L           +K               D   Y    
Sbjct: 5   PENTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNW----------DEDDGTEYCTAM 54

Query: 74  ------SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALIS 111
                   V   + I     S+                 A R          E ++    
Sbjct: 55  TDLADARAVAETIGITLHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFL 114

Query: 112 EHAKTINATLIMTAHT-----FDD---QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
           ++A T+ A  I T H       DD     E   ++      ++   L  +    +     
Sbjct: 115 DYAITLGADYIATGHYTRQRPLDDGSGGAE--LLKGLDPNKDQSYFLHAVSGERIART-- 170

Query: 164 WISRPFLRCRREDIRSFLLQRN 185
               P     + ++R    ++ 
Sbjct: 171 --LFPVGELEKPEVRRIAAEQG 190


>gi|313617895|gb|EFR90082.1| argininosuccinate synthase [Listeria innocua FSL S4-378]
          Length = 407

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 47/193 (24%)

Query: 19  PAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRETA- 66
              I++A SGG D S+           ++     V   ++   IK  AI+V       + 
Sbjct: 6   KEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLXXIKEKAITV-----GASA 60

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                 +  +  +      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 61  SYTIDAKEEFAENFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 116

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 117 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 158

Query: 179 SFLLQRNISWCED 191
           ++  + NI    D
Sbjct: 159 NYAKEHNIPVPID 171


>gi|229496734|ref|ZP_04390445.1| ExsB protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316280|gb|EEN82202.1| ExsB protein [Porphyromonas endodontalis ATCC 35406]
          Length = 225

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS  LL        + +       A++ D+   +  + E+      C +L I H 
Sbjct: 16 LSGGLDSTTLLY---DYRDEIAL------AVTFDYG-SKHNQREIPCAQHHCRQLGIEHL 65

Query: 86 VVS 88
          ++ 
Sbjct: 66 IIP 68


>gi|146310572|ref|YP_001175646.1| queuosine biosynthesis protein QueC [Enterobacter sp. 638]
 gi|145317448|gb|ABP59595.1| preQ(0) biosynthesis protein QueC [Enterobacter sp. 638]
          Length = 242

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 13/77 (16%)

Query: 15 SLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           L     ++V  SGG DS   L+ ALH           +   ++ D+  R  A+ +V   
Sbjct: 9  RLFMKRAVVV-FSGGQDSTTCLIQALHQYD--------EVHCVTFDYGQRHRAEIDVA-- 57

Query: 74 SDVCSRLRI-AHSVVSW 89
           ++  +L   AH V+  
Sbjct: 58 RELALKLGARAHKVLDV 74


>gi|32261063|emb|CAE00214.1| WbpG protein [Rhizobium leguminosarum bv. viciae 3841]
          Length = 386

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS  L               ++  A+ VD      ++  V  +  +  +L + 
Sbjct: 72  VGLSGGIDSAFLAHLAAR------KHGLRLLAVHVDGGW--NSEPAVHNIEILVRKLDLD 123

Query: 84  HS--VVSWKNSK 93
               V+ W+  +
Sbjct: 124 LHTYVIEWQEMR 135


>gi|325281886|ref|YP_004254428.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
 gi|324313695|gb|ADY34248.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM
           20712]
          Length = 364

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 56/201 (27%), Gaps = 49/201 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKI-------KFSAISVDHCLRET 65
              +L+A+SGG DS    + L     +      R+F  I       +    SVD      
Sbjct: 3   KKRVLMAMSGGIDSTVAAMLLLEQGYELVGVTYRTFDNISRGCMEKEKGCCSVD------ 56

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYAL 109
           +  E      +   L   H ++  +     T      G     R            ++  
Sbjct: 57  SLFEA---KRMAQELGFEHHILDIRQEFKDTVITNFIGEYLQGRTPNPCVICNSTIKWGK 113

Query: 110 ISEHAKTINATLIMTAH-----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           + E A  +    I T H       D +      R  R  A+     +    T+  +    
Sbjct: 114 LIETANEMRCDYIATGHYARIGHQDGR------RYLRKGADLSKDQTYFLWTLTQENLSR 167

Query: 165 ISRPFLRCRREDIRSFLLQRN 185
              P     + ++R       
Sbjct: 168 TLFPLGELTKPEVRQIAFDHG 188


>gi|308491228|ref|XP_003107805.1| hypothetical protein CRE_12780 [Caenorhabditis remanei]
 gi|308249752|gb|EFO93704.1| hypothetical protein CRE_12780 [Caenorhabditis remanei]
          Length = 378

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 18/81 (22%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RET-------AKDEVR 71
           +++ +SGG DS      L      R F  I    +        +E        +KDE  
Sbjct: 5  RVVIGMSGGVDSAVSAFLLKR----RGFDVIGVHMV----NWDSQEEGTSNCPRSKDESD 56

Query: 72 YVSDVCSRLRIAHSVVSWKNS 92
             +VC +L I    V++   
Sbjct: 57 -ARNVCDKLNIPFHTVNFVKE 76


>gi|258646844|ref|ZP_05734313.1| argininosuccinate synthase [Dialister invisus DSM 15470]
 gi|260404282|gb|EEW97829.1| argininosuccinate synthase [Dialister invisus DSM 15470]
          Length = 414

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 45/188 (23%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV----S 74
             +++A SGG D S+        +   +     +  A +++    E             +
Sbjct: 5   KKVVLAYSGGLDTSV-------IIPWLKENYNCEVIACTINLGQPEDFDAIHEKALKSGA 57

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMAAAR-EARY------------ALISEHAKTINATL 121
            V   L +    +     K    L A  R E RY              + + AK   A  
Sbjct: 58  SVAETLDVRREFIEEYAYKV---LQAGGRYEGRYLLGTSFARPLIGKCLVDMAKKYGADA 114

Query: 122 IMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           I    T   +DQ+     R +         +  +    L+D+            RED  +
Sbjct: 115 ICHGATGKGNDQV-----RFELAVKALAPHMKIIAPWRLWDMK----------SREDEMA 159

Query: 180 FLLQRNIS 187
           +    N+ 
Sbjct: 160 YAEAHNVP 167


>gi|311739982|ref|ZP_07713816.1| GMP synthase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305055|gb|EFQ81124.1| GMP synthase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 524

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 26/180 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR--YVSDVCSR 79
           +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   +++V   +V+   ++
Sbjct: 224 ICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGEREQVEKDFVASTGAK 277

Query: 80  L-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-------ATLIMTAHT 127
           L     R A        S P+    A   E   +     A  ++          ++    
Sbjct: 278 LVTADERAAFLEKLAGVSDPEAKRKAIGAEFIRSFERAVAGVLDDAPAGSTVDYLVQGTL 337

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + D +E+             +        +  D+   +  P     ++++R+   +  + 
Sbjct: 338 YPDVVES-----GGGDGTANIKSHHNVGGLPDDVEFELVEPLRLLFKDEVRAVGRELGLP 392


>gi|182415638|ref|YP_001820704.1| tRNA-specific 2-thiouridylase MnmA [Opitutus terrae PB90-1]
 gi|205816897|sp|B1ZZ32|MNMA_OPITP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|177842852|gb|ACB77104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Opitutus terrae PB90-1]
          Length = 378

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 62/217 (28%), Gaps = 56/217 (25%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHC-LRETAKD 68
           +     ILVA+SGG DS    + L     D      +++         + HC  +     
Sbjct: 1   MPGAEKILVAMSGGVDSSVAALLLKQQGYDVVGAYMKNWINEDQV---IGHCPWQ----Q 53

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQT----GLMAAA------------REARYALISE 112
           ++     V +++ I   VV+      +      L   A            RE ++ +   
Sbjct: 54  DIEDARRVATQIGIEFRVVNLMREYRERVVAYLLDGYARGLTPNPDIMCNREVKFGVFRS 113

Query: 113 HAKTINATLIMTAHTFD------DQ---------------LETV-YMRSQRDYAEKGMGL 150
            AK      I T H         D                  T   +       ++   L
Sbjct: 114 WAKDHGFAAIATGHYAQRVEVKPDLVTPAVLGGLNADGTPASTFALLEGADKNKDQSYFL 173

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + +    L D       P     + ++R    +  ++
Sbjct: 174 ALLSQEQLRDARF----PIGHLPKPELRRIAREAGLA 206


>gi|116250590|ref|YP_766428.1| lipopolysaccharide synthesis protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255238|emb|CAK06313.1| putative lipopolysaccharide synthesis protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 386

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
           V +SGG DS  L               ++  A+ VD      ++  V  +  +  +L + 
Sbjct: 72  VGLSGGIDSAFLAHLAAR------KHGLRLLAVHVDGGW--NSEPAVHNIEILVRKLDLD 123

Query: 84  HS--VVSWKNSK 93
               V+ W+  +
Sbjct: 124 LHTYVIEWQEMR 135


>gi|227486404|ref|ZP_03916720.1| possible NAD(+) synthase (glutamine-hydrolyzing) [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235585|gb|EEI85600.1| possible NAD(+) synthase (glutamine-hydrolyzing) [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 596

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 24/183 (13%)

Query: 6   IESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHCLR 63
           I+++    R   V    + + VSGG DS  +L+A+        F K K  A ++      
Sbjct: 290 IQALGLLQRMKAVGTEKVFLGVSGGIDSTAVLLAIDKAYEIAGFDKEKIGAYTMPAFGTS 349

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSW-------------KNSKPQTGLMAAAREARYALI 110
           +  K        +C  L I    ++                         A    R  ++
Sbjct: 350 DRTKSNAYL---LCEALGIDLKEINISKSVTAHLHDIGHDGKTADLAYENAQARMRTQVL 406

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            + +      +I T     D  E   M+    +    M   G+  T++     ++ + + 
Sbjct: 407 FDLSNMGGGLVIGTG----DLSEN--MQGFATFNGDHMASYGLNATLMKTELRYLIKSYA 460

Query: 171 RCR 173
              
Sbjct: 461 HFT 463


>gi|168238182|ref|ZP_02663240.1| gmp synthase (glutamineamidotransferase) [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194735323|ref|YP_002115573.1| GMP synthase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|226739723|sp|B4TR83|GUAA_SALSV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|194710825|gb|ACF90046.1| gmp synthase (glutamine-hydrolyzing) [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288913|gb|EDY28286.1| gmp synthase (glutamineamidotransferase) [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 525

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 212 KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHCAIGK------NLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 266 RLN---EAEQVMDMFGDHFGLNIVHVPAEERFLSALAGENDPEAKRKIIGRVFVEVFDEE 322

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 323 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|217972560|ref|YP_002357311.1| GMP synthase [Shewanella baltica OS223]
 gi|254800114|sp|B8E9T4|GUAA_SHEB2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|217497695|gb|ACK45888.1| GMP synthase, large subunit [Shewanella baltica OS223]
          Length = 525

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 65/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  +    +++ +SGG DS  + + LH  +        K + + VD+  L
Sbjct: 212 SIIEDAIERLKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGK------KLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +       +    V  +N         A  EA+  +I           
Sbjct: 266 RLN---EAEQVMEMFGDHFGLNIIHVDAENRFLDAMKGEADPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +   + L +  P    
Sbjct: 323 SKKCANAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDHMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|157962170|ref|YP_001502204.1| exsB protein [Shewanella pealeana ATCC 700345]
 gi|189029314|sp|A8H532|QUEC_SHEPA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|157847170|gb|ABV87669.1| exsB protein [Shewanella pealeana ATCC 700345]
          Length = 227

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 46/199 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +   I+ D+  R   ++E+     + S+L
Sbjct: 5   VVV-FSGGQDSTTCLIQALQHFD--------EVHGITFDYGQRH--REEIEIAKTLASKL 53

Query: 81  RIAHSVVSWKNSKPQTGLMAAARE-------------------AR----YALISEHAKTI 117
           ++A   V       +  + A  R+                    R      L   +A  +
Sbjct: 54  KLASHKVMDVTLLNELAISALTRDSIPVSNDLMDNGLPNTFVPGRNILFLTLAGIYAYQL 113

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A +++T        ET +      R+   K M  +        D  L I  P +   + 
Sbjct: 114 GADVVITG-----VCETDFSGYPDCRNDFVKAMQAALEQGM---DKKLTIQTPLMWLDKA 165

Query: 176 DIRSFLLQRN-ISWCEDPS 193
           +  +   +   +    D +
Sbjct: 166 ETWALADKYQSLDLIRDET 184


>gi|72383200|ref|YP_292555.1| GMP synthase [Prochlorococcus marinus str. NATL2A]
 gi|91206818|sp|Q46I26|GUAA_PROMT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|72003050|gb|AAZ58852.1| GMP synthase (glutamine-hydrolyzing) [Prochlorococcus marinus str.
           NATL2A]
          Length = 528

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           E+V   V+  V    +L+A+SGG DS  L   L+  +
Sbjct: 213 EAVSQ-VQQHVGDKKVLLALSGGVDSSTLAFLLNKAI 248


>gi|54307976|ref|YP_128996.1| GMP synthase [Photobacterium profundum SS9]
 gi|50400315|sp|Q6LU31|GUAA_PHOPR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46912402|emb|CAG19194.1| putative GMP synthase [Photobacterium profundum SS9]
          Length = 527

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 68/198 (34%), Gaps = 27/198 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE     ++  V    +++ +SGG DS  + + LH  + D      K + + VD+  L
Sbjct: 214 NIIEDAIANIKEQVGDDEVILGLSGGVDSSVVAMLLHRAIGD------KLTCVFVDNGLL 267

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHAK 115
           R     E   V D       +  ++V  K                A R+       +   
Sbjct: 268 RLN---EGEQVMDMFGDHFGL--NIVHVKAEDRFLNALAGENDPEAKRKIIGHAFIDVFD 322

Query: 116 TI-----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                  NA  +     + D +E+    + ++     +        +  D+ + +  P  
Sbjct: 323 EESKKLKNAKWLAQGTIYPDVIES---AASKNGKAHVIKSHHNVGGLPDDMEMGLVEPLR 379

Query: 171 RCRREDIRSFLLQRNISW 188
              ++++R   L+  + +
Sbjct: 380 ELFKDEVRKIGLELGLPY 397


>gi|182416846|ref|ZP_02948232.1| ExsB protein [Clostridium butyricum 5521]
 gi|237669043|ref|ZP_04529027.1| ExsB protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379308|gb|EDT76807.1| ExsB protein [Clostridium butyricum 5521]
 gi|237657391|gb|EEP54947.1| ExsB protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 218

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          ++V  SGG DS   L  AL            +  A++ +    H L      E+     +
Sbjct: 6  VVV-FSGGQDSTTCLFWALEQFD--------EVIAVTFNYNQKHKL------EIECAKSI 50

Query: 77 CSRLRIAHSVVS 88
             L + H ++ 
Sbjct: 51 AKELGVEHHILD 62


>gi|27467405|ref|NP_764042.1| hypothetical protein SE0487 [Staphylococcus epidermidis ATCC
          12228]
 gi|57866294|ref|YP_187969.1| exsB protein [Staphylococcus epidermidis RP62A]
 gi|251810142|ref|ZP_04824615.1| ExsB family post-transcriptional regulator [Staphylococcus
          epidermidis BCM-HMP0060]
 gi|282875712|ref|ZP_06284583.1| protein ExsB [Staphylococcus epidermidis SK135]
 gi|293368168|ref|ZP_06614798.1| transcription regulator ExsB [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|81675233|sp|Q5HR20|QUEC_STAEQ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81844015|sp|Q8CTH8|QUEC_STAES RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|27314948|gb|AAO04084.1|AE016745_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC
          12228]
 gi|57636952|gb|AAW53740.1| exsB protein [Staphylococcus epidermidis RP62A]
 gi|251806334|gb|EES58991.1| ExsB family post-transcriptional regulator [Staphylococcus
          epidermidis BCM-HMP0060]
 gi|281295739|gb|EFA88262.1| protein ExsB [Staphylococcus epidermidis SK135]
 gi|291317702|gb|EFE58118.1| transcription regulator ExsB [Staphylococcus epidermidis
          M23864:W2(grey)]
 gi|329735600|gb|EGG71884.1| queuosine biosynthesis protein QueC [Staphylococcus epidermidis
          VCU045]
 gi|329736844|gb|EGG73109.1| queuosine biosynthesis protein QueC [Staphylococcus epidermidis
          VCU028]
          Length = 223

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 15 SLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           L     ++V  SGG DS   L  A       + F +++   ++ ++  R     E+   
Sbjct: 5  DLNKEKALVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DKEIEVA 53

Query: 74 SDVCSRLRIAHSVVS 88
            +     + H ++ 
Sbjct: 54 KKIAKEQNLKHHILD 68


>gi|293397470|ref|ZP_06641722.1| transcription regulator ExsB [Serratia odorifera DSM 4582]
 gi|291420049|gb|EFE93326.1| transcription regulator ExsB [Serratia odorifera DSM 4582]
          Length = 236

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 13/77 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          +   + ++V  SGG DS   L+ AL    S           ++ D+  R +  +E++   
Sbjct: 1  MKNKSAVVV-FSGGQDSTTCLVKALAEYDS--------VHCLTFDYGQRHS--EEIKIAE 49

Query: 75 DVCSRLRI-AHSVVSWK 90
           +  +L + +H ++   
Sbjct: 50 QIAKKLNVSSHKILDVN 66


>gi|262306105|gb|ACY45645.1| gln amidotransferase [Skogsbergia lerneri]
          Length = 197

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R  V    +L+ VSGG DS      L   L        +  A+ +++   R+    E 
Sbjct: 36  YIRDAVGNNKVLMLVSGGVDSTVCAALLQKALRSD-----QVIAVHINNGFMRKG---ET 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
             V     R+ +   VV 
Sbjct: 88  SQVEQSLVRVGVKLKVVH 105


>gi|119477972|ref|ZP_01618072.1| exsB protein [marine gamma proteobacterium HTCC2143]
 gi|119448885|gb|EAW30127.1| exsB protein [marine gamma proteobacterium HTCC2143]
          Length = 218

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 9/71 (12%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           I+V  SGG DS      L+  L +         AIS ++  R     E+ Y +  C  L
Sbjct: 2  KIVVIYSGGIDS---FTILNKALQE----GHDVLAISFNYGQRHN--KELDYAARACKEL 52

Query: 81 RIAHSVVSWKN 91
           I H +V    
Sbjct: 53 GIVHKLVDISA 63


>gi|85859860|ref|YP_462062.1| GMP synthase [Syntrophus aciditrophicus SB]
 gi|85722951|gb|ABC77894.1| GMP synthase (glutamine-hydrolyzing) [Syntrophus aciditrophicus SB]
          Length = 296

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 60/199 (30%), Gaps = 41/199 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M +S  +     V  L       VA SGG DS  LL A    L D        +A++   
Sbjct: 24  MQMSRSQKYDILVNFLKSYGSCAVAFSGGVDSTFLLWAAREALGD------SVTALT--- 74

Query: 61  CLRETA----KDEVRYVSDVCSRLRIAHSVVSWKNSKP-QTGLMAAAREARYALISEH-- 113
               +A    K+E+     +   + + H+V+    ++  +          +  L S    
Sbjct: 75  ---ASAPYMPKEEICEAGRIAETIGVRHAVLEIPLNEEIRFNPDDRCFRCKRQLFSAMKA 131

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR- 171
            A       ++     DD                   L      +     L +  P L  
Sbjct: 132 EADQRGIPSVLDGSNLDD-------------------LQDYRPGMKALKELKVPSPLLEQ 172

Query: 172 -CRREDIRSFLLQRNISWC 189
             R+++IR    +  +   
Sbjct: 173 RWRKKEIRKIGREIGLPNW 191


>gi|319650597|ref|ZP_08004737.1| hypothetical protein HMPREF1013_01342 [Bacillus sp. 2_A_57_CT2]
 gi|317397778|gb|EFV78476.1| hypothetical protein HMPREF1013_01342 [Bacillus sp. 2_A_57_CT2]
          Length = 274

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 34/181 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCS 78
            I++A SGG DS  LL          + GK    AI+ D      +    E+     + +
Sbjct: 22  RIIIAFSGGVDSTYLLKVALD-----TLGKENVLAITAD----SESFPPSELEETIRIAN 72

Query: 79  RLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
            +   H ++          S+  +      ++  +  +           +      DD  
Sbjct: 73  TIDAPHQIIKMSELSIPGYSENDSNRCYYCKKGLFENLYPIMIEKGYHNLTFGLIKDDLG 132

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDP 192
           E                  G+   I  ++   ++       +EDIR    +  +   + P
Sbjct: 133 E---------------HRPGVKAAIEKNVRGPLAE--ADITKEDIRIRSKELGLDTWDKP 175

Query: 193 S 193
           S
Sbjct: 176 S 176


>gi|242372945|ref|ZP_04818519.1| ExsB family post-transcriptional regulator [Staphylococcus
          epidermidis M23864:W1]
 gi|242349429|gb|EES41030.1| ExsB family post-transcriptional regulator [Staphylococcus
          epidermidis M23864:W1]
          Length = 223

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 12/75 (16%)

Query: 15 SLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           L     I+V  SGG DS   L  A       + F +++   ++ ++  R     E+   
Sbjct: 5  DLNKDKAIVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DTEIEVA 53

Query: 74 SDVCSRLRIAHSVVS 88
            + +   + H ++ 
Sbjct: 54 KKIANEQGLKHHILD 68


>gi|312214114|emb|CBX94116.1| similar to GMP synthase [Leptosphaeria maculans]
          Length = 541

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 70/211 (33%), Gaps = 38/211 (18%)

Query: 4   SPIESVRFFVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
             ++     +R LV     ++ AVSGG DS      +   + DR      F A+ VD+  
Sbjct: 217 KFVDQEIARIRKLVGDKGQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVMVDNGV 270

Query: 62  LRETAKDEVRYVSDVCSR-LRIAHSVVSWKN--SKPQTGLMAAAREARY---ALISEHAK 115
           LR     E   V       L I  +V+   +       G+     + R        E  +
Sbjct: 271 LRLN---EAVQVKKTLDEGLGINLTVIDASDLFLDRLAGITDNPEQKRKVIGNTFIEVFQ 327

Query: 116 TI---------------NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                                ++    + D +E++  +      +    + G+      +
Sbjct: 328 EQAKKIAAAAASSSKAGEIEWLLQGTLYPDVIESLSFKGPSQTIKTHHNVGGLPA----N 383

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNISWCED 191
           +NL +  P     ++++R   ++  I   ED
Sbjct: 384 MNLKLIEPLRELFKDEVRELGVELGIP--ED 412


>gi|289804178|ref|ZP_06534807.1| GMP synthase [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 299

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             I+     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 9   KIIDDAVARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 62

Query: 63  RETAKDEVRYVSDVCSRL------RIAHSVVSWKNSKPQTGLMAAA----REARYALISE 112
           R     E   V D+           +            +    A      R        E
Sbjct: 63  RLN---EAEQVMDMFGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEE 119

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 120 ALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLKEL 176

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 177 FKDEVRKIGLELGLPY 192


>gi|59711245|ref|YP_204021.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Vibrio fischeri ES114]
 gi|75354446|sp|Q5E763|GUAA_VIBF1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|59479346|gb|AAW85133.1| GMP synthetase (glutamine aminotransferase) [Vibrio fischeri ES114]
          Length = 517

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     ++  V    +++ +SGG DS  + +  H  + D      K + + VD+  L
Sbjct: 204 SIIEDAVARIKEQVGDDEVILGLSGGVDSSVVAMLAHRAIGD------KLTCVFVDNGLL 257

Query: 63  R-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R   A   +       ++  +    V+ +          +  E +  +I           
Sbjct: 258 RLNEADQVMEM---FGNKFGLNIVHVNAEQRFLDALEGESDPETKRKIIGHVFVDIFDEE 314

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLKNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMEMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|260062415|ref|YP_003195495.1| GMP synthase [Robiginitalea biformata HTCC2501]
 gi|88783978|gb|EAR15149.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Robiginitalea biformata HTCC2501]
          Length = 509

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           +E+    ++  +    +++ +SGG DS    + LH  +            I V++  LR+
Sbjct: 199 VETTVAELKEKIGTEKVILGLSGGVDSTVAAMLLHRAIGKH------LHCIFVNNGLLRK 252

Query: 65  TAKDEVRY 72
              +EV +
Sbjct: 253 NEFEEVLH 260


>gi|328875337|gb|EGG23702.1| GMP synthetase [Dictyostelium fasciculatum]
          Length = 692

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++  V    +LV VSGG DS      L      ++ G  +  A+ +D
Sbjct: 244 IQQTVGTGKVLVLVSGGVDSTVCAALL-----TKAIGAERVVALHID 285


>gi|260886355|ref|ZP_05897618.1| argininosuccinate synthase [Selenomonas sputigena ATCC 35185]
 gi|330838873|ref|YP_004413453.1| argininosuccinate synthase [Selenomonas sputigena ATCC 35185]
 gi|260863876|gb|EEX78376.1| argininosuccinate synthase [Selenomonas sputigena ATCC 35185]
 gi|329746637|gb|AEB99993.1| argininosuccinate synthase [Selenomonas sputigena ATCC 35185]
          Length = 406

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 59/207 (28%), Gaps = 54/207 (26%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----------AKD 68
             +++A SGG D S+     +   L + ++   +  A  VD    +           +  
Sbjct: 7   KKVVLAYSGGLDTSV-----IIPWLKE-NYDGCEVIAACVDIGQGDEVAPVHDKALKSGA 60

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-------AREARYALISEHAKTINATL 121
              YV D+            W   K Q             AR      + E AK   A  
Sbjct: 61  SKAYVEDLTQEF---LEDYVWPTLKAQAVYEGKYLLGTSFARPLIAKRLVEIAKEEGADA 117

Query: 122 IMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF----LRCRRE 175
           I    T   +DQ+                             NL I  P+    L  R E
Sbjct: 118 IAHGATGKGNDQV------------------RFELTIKALAPNLTIIAPWREWELGARTE 159

Query: 176 DIRSFLLQRNISWCEDPSNTDDRFERV 202
           +I  +  +  I   E+  N     +R 
Sbjct: 160 EIE-YAKKHGIPVAEE--NKTYSMDRN 183


>gi|124005943|ref|ZP_01690781.1| argininosuccinate synthase [Microscilla marina ATCC 23134]
 gi|123988626|gb|EAY28267.1| argininosuccinate synthase [Microscilla marina ATCC 23134]
          Length = 405

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 40/184 (21%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S         +  ++     +  A++V+      + +E++ ++    +
Sbjct: 8   KVVLAFSGGLDTS----YCAQYLAQEKGM---EVYAVAVNTG--GFSDEELKQIAQRAEQ 58

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRS 139
           L     VV +K               +Y +     +     L ++A       E ++   
Sbjct: 59  LN----VVDFKVLDCTNQYYEEC--VKYLIFGNILRNQTYPLSVSA-------ERMFQAL 105

Query: 140 QRDYAEKGMGLSGMC--------DTILYDLNLWISRP---------FLRCRREDIRSFLL 182
                 + +G   +         D + +DL   I  P          L+  RE    +L 
Sbjct: 106 AVANYTQELGAKYVAHGSTGAGNDQVRFDLAFQIIMPEVEIITPIRDLQLSREAEIDYLK 165

Query: 183 QRNI 186
              I
Sbjct: 166 ANGI 169


>gi|77360059|ref|YP_339634.1| regulator protein [Pseudoalteromonas haloplanktis TAC125]
 gi|110816244|sp|Q3IKE8|QUEC_PSEHT RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|76874970|emb|CAI86191.1| putative regulator protein [Pseudoalteromonas haloplanktis
          TAC125]
          Length = 218

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 21 HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++V  SGG DS   L  AL               A+S D+  R     E++  + VC +
Sbjct: 4  KVVVIYSGGMDSFTVLNKALQQ--------GHDVYALSFDYGQRHV--KELKVAAQVCKQ 53

Query: 80 LRIAHSVVSWKN 91
          L + H +V    
Sbjct: 54 LNVPHKIVDISA 65


>gi|320165389|gb|EFW42288.1| GMP synthetase [Capsaspora owczarzaki ATCC 30864]
          Length = 687

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++SLV    +LV VSGG DS      L      ++    +  A+ +D
Sbjct: 218 IQSLVGDKKVLVLVSGGVDSSVCAALL-----TKAINPDRVVALHID 259


>gi|289450871|ref|YP_003475359.1| GMP synthase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185418|gb|ADC91843.1| GMP synthase (glutamine-hydrolyzing) [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 525

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           A ++ A SGG DS    + +H  + +        + I VDH L
Sbjct: 230 AKVICAFSGGVDSAVAALLVHKAIGN------NLTCIFVDHGL 266


>gi|269120878|ref|YP_003309055.1| argininosuccinate synthase [Sebaldella termitidis ATCC 33386]
 gi|268614756|gb|ACZ09124.1| argininosuccinate synthase [Sebaldella termitidis ATCC 33386]
          Length = 399

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 56/196 (28%), Gaps = 57/196 (29%)

Query: 18  YPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RETA--- 66
               +++A SGG D S+        +   +    ++  A  V+          R+ A   
Sbjct: 2   SKDKVVLAYSGGLDTSI-------IIPWLKENYDLEVIACCVNVGQEDDMEEVRKKAVES 54

Query: 67  --------KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN 118
                        +V D   R  +    V        T   A AR      + + A   +
Sbjct: 55  GATKVYVEDKREEFVRDYAFR-GLKAGAVYEHKYLLGT---AFARPLIAKTLVDVAHKED 110

Query: 119 ATLIMTAHT--FDDQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC-- 172
           A  I    T   +DQ+  ET                        +D  L I  P+     
Sbjct: 111 AKYICHGATGKGNDQVRFET--------------------GIASFDPELKIIAPWRMWDI 150

Query: 173 -RREDIRSFLLQRNIS 187
             RED   +  +  IS
Sbjct: 151 SSREDAIDYANKHGIS 166


>gi|237738052|ref|ZP_04568533.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           mortiferum ATCC 9817]
 gi|229419932|gb|EEO34979.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           mortiferum ATCC 9817]
          Length = 512

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 36/192 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS      +H  + D      + + I VD   LR   KDE +
Sbjct: 209 IRETVGDKKVLLGLSGGVDSSVAATLIHKAIGD------QLTCIFVDTGLLR---KDEAK 259

Query: 72  YV-----SDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINA 119
            V      +    + I       +        S P++      +E       E AK  + 
Sbjct: 260 KVMEVYGENF--HMNIKCVDAEERFLSKLAGVSDPESKRKIIGKEFIEVFDEEAAKLTDV 317

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRRE 175
             +     + D +E++        + KG  +          +  D+   +  P     ++
Sbjct: 318 EFLAQGTIYPDVIESM--------SVKGPSMTIKSHHNVGGLPEDMKFKLLEPLRELFKD 369

Query: 176 DIRSFLLQRNIS 187
           ++R    +  I 
Sbjct: 370 EVRKVGRELGIP 381


>gi|27376680|ref|NP_768209.1| hypothetical protein bll1569 [Bradyrhizobium japonicum USDA 110]
 gi|27349821|dbj|BAC46834.1| bll1569 [Bradyrhizobium japonicum USDA 110]
          Length = 2710

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 14/139 (10%)

Query: 290  VMLFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDG--RYQFQNL 347
            ++       +  VS+G   + R     W  R VR L    +    + + D   ++     
Sbjct: 2005 LVTRADDTAKAQVSLGEEEVRRNEQHAWAGR-VRGLAWPAIAWNRSAIADDEIQHDPTGA 2063

Query: 348  SDSLIQIG------PQSYRKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTKFD 401
             D  ++ G       +    A + +G      +RA  S+ +      +LAP      +  
Sbjct: 2064 PDQTVEGGYLPADAAEMRESAFITAGQRVAFRRRAAKSLRAPPDRHSVLAP-----PRAR 2118

Query: 402  LPVAYAFSISFGKVFIPRL 420
             P   A + +FG+   P  
Sbjct: 2119 APTIDAIAAAFGQARNPLP 2137


>gi|226479158|emb|CAX73074.1| putative GMP synthase [Schistosoma japonicum]
          Length = 739

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    IL+ +SGG DS      L      ++    +  A+ +D+  LR   KDE  
Sbjct: 206 IRESVGANKILILLSGGVDSTVCAALLS-----KTLDPSQIIAVHIDNGFLR---KDESS 257

Query: 72  YVSDVCSRLRIAHSVVS 88
            V +    L I   +++
Sbjct: 258 KVIESLKSLGIKVHLIN 274


>gi|256092379|ref|XP_002581921.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase
           [Schistosoma mansoni]
 gi|238668268|emb|CAZ38161.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt
           ransferase,putative [Schistosoma mansoni]
          Length = 313

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 20/124 (16%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----AKDEVRYVSDVCS 78
           +VA+SGG DS    + LH +        ++      +   R+     A  ++     V  
Sbjct: 22  VVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAE 81

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTINATLI 122
                H +++++    +  + + A                +  ++  + +  + + A ++
Sbjct: 82  GTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQVTRNLGADVL 141

Query: 123 MTAH 126
           +T H
Sbjct: 142 ITGH 145


>gi|242309493|ref|ZP_04808648.1| asparagine synthase [Helicobacter pullorum MIT 98-5489]
 gi|239524064|gb|EEQ63930.1| asparagine synthase [Helicobacter pullorum MIT 98-5489]
          Length = 559

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ++VR  +RS V    + ++VSGG DS  L    + + +   +  + F          E+ 
Sbjct: 239 DAVRIRLRSDVA---VALSVSGGVDSSILAHLANKMGAKCHYFGVNFK---------ESN 286

Query: 67  KDEVRYVSDVCSRLRIA 83
           +DE +++  + S L + 
Sbjct: 287 QDETKHIKQLQSDLGVE 303


>gi|206577844|ref|YP_002240076.1| queuosine biosynthesis protein QueC [Klebsiella pneumoniae 342]
 gi|288936827|ref|YP_003440886.1| exsB protein [Klebsiella variicola At-22]
 gi|290510117|ref|ZP_06549487.1| exsB protein [Klebsiella sp. 1_1_55]
 gi|254764354|sp|B5Y0T5|QUEC_KLEP3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|206566902|gb|ACI08678.1| queuosine biosynthesis protein QueC [Klebsiella pneumoniae 342]
 gi|288891536|gb|ADC59854.1| exsB protein [Klebsiella variicola At-22]
 gi|289776833|gb|EFD84831.1| exsB protein [Klebsiella sp. 1_1_55]
          Length = 233

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 R-IAHSVVSW 89
            +AH V+  
Sbjct: 54 GAVAHKVLDV 63


>gi|205829099|sp|Q5GTC8|MNMA_WOLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 371

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 20/124 (16%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----AKDEVRYVSDVCS 78
           +VA+SGG DS    + LH +        ++      +   R+     A  ++     V  
Sbjct: 22  VVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAE 81

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTINATLI 122
                H +++++    +  + + A                +  ++  + +  + + A ++
Sbjct: 82  GTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQVTRNLGADVL 141

Query: 123 MTAH 126
           +T H
Sbjct: 142 ITGH 145


>gi|76155514|gb|AAX26805.2| SJCHGC05120 protein [Schistosoma japonicum]
          Length = 200

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    IL+ +SGG DS      L      ++    +  A+ +D+  LR   KDE  
Sbjct: 112 IRESVGANKILILLSGGVDSTVCAALLS-----KTLDPSQIIAVHIDNGFLR---KDESS 163

Query: 72  YVSDVCSRLRIAHSVVS 88
            V +    L I   +++
Sbjct: 164 KVIESLKSLGIKVHLIN 180


>gi|58584415|ref|YP_197988.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58418731|gb|AAW70746.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contain the PP-loop ATPase domain
           [Wolbachia endosymbiont strain TRS of Brugia malayi]
          Length = 385

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 20/124 (16%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----AKDEVRYVSDVCS 78
           +VA+SGG DS    + LH +        ++      +   R+     A  ++     V  
Sbjct: 36  VVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQDIYDAKRVAE 95

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKTINATLI 122
                H +++++    +  + + A                +  ++  + +  + + A ++
Sbjct: 96  GTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQVTRNLGADVL 155

Query: 123 MTAH 126
           +T H
Sbjct: 156 ITGH 159


>gi|326336310|ref|ZP_08202481.1| GMP synthase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691484|gb|EGD33452.1| GMP synthase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 507

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE+    ++  V    +++ +SGG DS    + L+  +        +   I V++ L
Sbjct: 196 NFIEATVQTLKKQVGKEKVVLGLSGGVDSTVAAVLLNRAI------GSQLHCIFVNNGL 248


>gi|297538326|ref|YP_003674095.1| GMP synthase large subunit [Methylotenera sp. 301]
 gi|297257673|gb|ADI29518.1| GMP synthase, large subunit [Methylotenera sp. 301]
          Length = 534

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 34/195 (17%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ V    +++ +SGG DS      +H  + +      + + + VDH  LR    D   
Sbjct: 216 IKAQVGDEEVILGLSGGVDSSVAAALIHRAIGN------QLTCVFVDHGLLRLNEGD--- 266

Query: 72  YVSD-VCSRLRIAHSVVSWKN-----------SKPQTGLMAAAREARYALISEHAK---- 115
            V +    RL +  +V+               S P+       RE      +E AK    
Sbjct: 267 LVMEMFAGRLHV--NVIRVDATDQFMGHLAGVSDPEAKRKIIGREFVEVFKNEAAKLKAG 324

Query: 116 ---TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                 AT +     + D +E+      +      +        +   L L +  P    
Sbjct: 325 TGGHKGATFLAQGTIYPDVIES---GGAKSKKAVTIKSHHNVGGLPEQLGLKLLEPLRDL 381

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   +   + 
Sbjct: 382 FKDEVRELGVALGLP 396


>gi|157813140|gb|ABV81315.1| putative GMP synthetase [Narceus americanus]
          Length = 197

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V    +L+ +SGG DS      +   L +      +  AI +D+   R+ 
Sbjct: 31  EQCIRYIRETVGNCKVLMLLSGGVDSTVCAALMWKALKED-----QIIAIHIDNGFMRKE 85

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKN 91
              E R V  +  ++ +  + ++ K+
Sbjct: 86  ---ESRQVEQMLHKIGLKVTALNCKH 108


>gi|315283144|ref|ZP_07871401.1| argininosuccinate synthase [Listeria marthii FSL S4-120]
 gi|313613211|gb|EFR87098.1| argininosuccinate synthase [Listeria marthii FSL S4-120]
          Length = 404

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 45/193 (23%)

Query: 18  YPAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRE-- 64
               I++A SGG D S+           ++     V   ++   IK  AI+V     E  
Sbjct: 2   AKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAITV--GASESY 59

Query: 65  --TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              AK+E  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 60  TIDAKEE--FAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + NI    D
Sbjct: 156 NYAKEHNIPVPID 168


>gi|313607645|gb|EFR83912.1| argininosuccinate synthase [Listeria monocytogenes FSL F2-208]
          Length = 407

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 45/193 (23%)

Query: 18  YPAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRE-- 64
               I++A SGG D S+           ++     V   ++   IK  AI+V     E  
Sbjct: 5   AKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAITV--GASESY 62

Query: 65  --TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              AK+E  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 63  TIDAKEE--FAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 116

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 117 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 158

Query: 179 SFLLQRNISWCED 191
           ++  + NI    D
Sbjct: 159 NYAKEHNIPVPID 171


>gi|302332422|gb|ADL22615.1| queuosine biosynthesis protein QueC [Staphylococcus aureus subsp.
          aureus JKD6159]
          Length = 222

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     I+V  SGG DS   L  A       + F +++   ++ ++  R     E+    
Sbjct: 5  LNNEKAIVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DTEIEIAK 53

Query: 75 DVCSRLRIAHSVVS 88
           +     + H V+ 
Sbjct: 54 QIAQDQGMKHHVLD 67


>gi|46908325|ref|YP_014714.1| argininosuccinate synthase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47091758|ref|ZP_00229553.1| argininosuccinate synthase [Listeria monocytogenes str. 4b H7858]
 gi|217963752|ref|YP_002349430.1| argininosuccinate synthase [Listeria monocytogenes HCC23]
 gi|224498464|ref|ZP_03666813.1| argininosuccinate synthase [Listeria monocytogenes Finland 1988]
 gi|226224696|ref|YP_002758803.1| argininosuccinate synthase [Listeria monocytogenes Clip81459]
 gi|254826266|ref|ZP_05231267.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-194]
 gi|254854078|ref|ZP_05243426.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-503]
 gi|254931801|ref|ZP_05265160.1| argininosuccinate synthase [Listeria monocytogenes HPB2262]
 gi|255520760|ref|ZP_05387997.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-175]
 gi|290892237|ref|ZP_06555233.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-071]
 gi|300765563|ref|ZP_07075543.1| argininosuccinate synthase [Listeria monocytogenes FSL N1-017]
 gi|68566245|sp|Q71XS4|ASSY_LISMF RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|254807527|sp|B8DH28|ASSY_LISMH RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|259585362|sp|C1KX43|ASSY_LISMC RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|46881596|gb|AAT04891.1| argininosuccinate synthase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47019769|gb|EAL10507.1| argininosuccinate synthase [Listeria monocytogenes str. 4b H7858]
 gi|217333022|gb|ACK38816.1| argininosuccinate synthase [Listeria monocytogenes HCC23]
 gi|225877158|emb|CAS05871.1| Putative argininosuccinate synthase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607472|gb|EEW20080.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-503]
 gi|290558360|gb|EFD91878.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-071]
 gi|293583355|gb|EFF95387.1| argininosuccinate synthase [Listeria monocytogenes HPB2262]
 gi|293595505|gb|EFG03266.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-194]
 gi|300513765|gb|EFK40832.1| argininosuccinate synthase [Listeria monocytogenes FSL N1-017]
 gi|307571673|emb|CAR84852.1| argG [Listeria monocytogenes L99]
 gi|328465898|gb|EGF37079.1| argininosuccinate synthase [Listeria monocytogenes 1816]
 gi|328472470|gb|EGF43335.1| argininosuccinate synthase [Listeria monocytogenes 220]
 gi|332312539|gb|EGJ25634.1| Argininosuccinate synthase [Listeria monocytogenes str. Scott A]
          Length = 404

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 45/193 (23%)

Query: 18  YPAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRE-- 64
               I++A SGG D S+           ++     V   ++   IK  AI+V     E  
Sbjct: 2   AKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAITV--GASESY 59

Query: 65  --TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              AK+E  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 60  TIDAKEE--FAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + NI    D
Sbjct: 156 NYAKEHNIPVPID 168


>gi|226711457|sp|A5DAK5|CTU2_PICGU RecName: Full=Cytoplasmic tRNA 2-thiolation protein 2
 gi|190344524|gb|EDK36212.2| hypothetical protein PGUG_00310 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 420

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-----SFGKIKFSAISVD 59
           E+ +   +++  P  +L+A+SGGS S+ LL A+ S+L ++            + ++VD
Sbjct: 51  EAYKVKYKTVENPHRVLLALSGGSSSLVLLDAVASLLQEQAGQHGGRQGFALTVVNVD 108


>gi|146421981|ref|XP_001486933.1| hypothetical protein PGUG_00310 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 420

 Score = 42.6 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR-----SFGKIKFSAISVD 59
           E+ +   +++  P  +L+A+SGGS S+ LL A+ S+L ++            + ++VD
Sbjct: 51  EAYKVKYKTVENPHRVLLALSGGSSSLVLLDAVASLLQEQAGQHGGRQGFALTVVNVD 108


>gi|257486728|ref|ZP_05640769.1| ExsB family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010197|gb|EGH90253.1| ExsB family protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 201

 Score = 42.6 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS+       +       G      I++++  +  A+ E+     +C +L+I H 
Sbjct: 7   LSGGMDSLA-----VAWWQRPEVG------ITLNYG-QLAAEAEIAASKTICEQLQIEHH 54

Query: 86  VVSWKNSKPQTGLMAAA 102
           V+S       +G MA  
Sbjct: 55  VISIDCRSIGSGDMAGG 71


>gi|241762984|ref|ZP_04761046.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gi|241367936|gb|EER62155.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 385

 Score = 42.6 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
           +L   A + V VSGG DS  L   + + L +     ++ + I  D   R   +D      
Sbjct: 39  ALAGHAPVYVGVSGGKDSQALAYRVQAHLDEIGHAGVR-ALIHSDLG-RIEWRDSAPVCE 96

Query: 75  DVCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEH 113
            +  R+      V  +      +     AA   RY ++S  
Sbjct: 97  RLAERIGWELVTVRRQAGDMVDRWLSRWAANVERYRMLSCV 137


>gi|14520469|ref|NP_125944.1| hypothetical protein PAB0172 [Pyrococcus abyssi GE5]
 gi|5457684|emb|CAB49175.1| Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Pyrococcus abyssi GE5]
          Length = 210

 Score = 42.6 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 34/167 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS      L  +  + +   + F  +           +  +Y  +    L   H 
Sbjct: 9   FSGGKDSSLAAWILSKLGYEVTLVMVTFGVL----------DNW-KYARETAKILGFEHE 57

Query: 86  VVSWKNSKPQTG----LMAAA--REARY---ALISEHAKTINATLIMTAHTFDDQLETVY 136
           VV    +  +      L      R  +Y     +   A   +   I      DD++  + 
Sbjct: 58  VVELPRNILENAVNMCLEDGRPTRAIQYIHEMALEYIASREDVERISDGTRRDDKVPFLD 117

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
           +R  R   ++               N+   RP L    + IR  + +
Sbjct: 118 IRKARSLEDRF--------------NVAYIRPLLGLGYKTIRELVNK 150


>gi|311030028|ref|ZP_07708118.1| aluminum resistance protein [Bacillus sp. m3-13]
 gi|311032348|ref|ZP_07710438.1| aluminum resistance protein [Bacillus sp. m3-13]
          Length = 223

 Score = 42.6 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 31/121 (25%)

Query: 26  VSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAH 84
            SGG DS   L+ A+            +  A++  +  R     E+   + +   L + H
Sbjct: 11  FSGGQDSTTCLIWAMKEFD--------EVEAVTFHYGQRHE--LEIDCATSIAKELGVKH 60

Query: 85  SVVSWK-------NSKPQTGLMAA------------AREARY-ALISEHAKTINATLIMT 124
            ++          N+  +  +                R   + +  +  AK I A  I+T
Sbjct: 61  RILDMSLLGQLTPNALTRDNIEIEEKEGELPSTFVDGRNLLFLSFAAVAAKQIGARHIVT 120

Query: 125 A 125
            
Sbjct: 121 G 121


>gi|300717941|ref|YP_003742744.1| GMP synthase [glutamine-hydrolyzing] [Erwinia billingiae Eb661]
 gi|299063777|emb|CAX60897.1| GMP synthase [glutamine-hydrolyzing] [Erwinia billingiae Eb661]
          Length = 526

 Score = 42.6 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  V    +++ +SGG DS    + LH  + DR       + + VD+  L
Sbjct: 213 KIIEDTVERLREQVGNDKVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V D       +    V+ ++          +P+       R         
Sbjct: 267 RLN---EAEQVMDMFGDHFGLNIIHVAAEDRFLDALAGIDEPEAKRKTIGRVFVEVFDEH 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                +   +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 324 ATMLQDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  +  
Sbjct: 381 FKDEVRKIGLELGLPH 396


>gi|314933023|ref|ZP_07840389.1| ExsB protein [Staphylococcus caprae C87]
 gi|313654342|gb|EFS18098.1| ExsB protein [Staphylococcus caprae C87]
          Length = 223

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     I+V  SGG DS   L  A       + F +++   ++ ++  R     E+    
Sbjct: 6  LDKDKAIVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DTEIEVAR 54

Query: 75 DVCSRLRIAHSVVS 88
           + +   + H ++ 
Sbjct: 55 KIANEQNLKHHILD 68


>gi|294495063|ref|YP_003541556.1| ExsB family protein [Methanohalophilus mahii DSM 5219]
 gi|292666062|gb|ADE35911.1| ExsB family protein [Methanohalophilus mahii DSM 5219]
          Length = 268

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 52/208 (25%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGL------LIALHSVLSDRSFGKIKFS 54
           M  + ++ +  F++S      I +  SGG DS  L      +     +    +   I   
Sbjct: 4   MTNNKLKQLENFIQS---TGPIAILFSGGVDSSLLSVVSREVHGDKHICILLNSPFIPEY 60

Query: 55  AISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY------- 107
           A+              R      +   +   ++     + +  +    R+  Y       
Sbjct: 61  AV--------------RRAKQTANEYGLKLHILDIDPLEYE-NIRMNPRDRCYHCKKKVI 105

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            +  ++A ++  T+I       D   T  +R             G+  +        I  
Sbjct: 106 EVARKYAASLGYTVIADGTNVSD---TQTLR------------PGLAASREEG----ILH 146

Query: 168 PFL--RCRREDIRSFLLQRNISWCEDPS 193
           PF+     + DIR    Q++  + + PS
Sbjct: 147 PFVSANITKADIRQIAKQKDCDFWDLPS 174


>gi|292489035|ref|YP_003531922.1| GMP synthase [Erwinia amylovora CFBP1430]
 gi|291554469|emb|CBA21985.1| GMP synthase [Erwinia amylovora CFBP1430]
 gi|312173191|emb|CBX81446.1| GMP synthase [Erwinia amylovora ATCC BAA-2158]
          Length = 534

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  V    +++ +SGG DS    + LH  + DR       + + VD+  L
Sbjct: 221 KIIEDAVERLREQVGDDKVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLL 274

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +       +    V  +N          +P+       R        E
Sbjct: 275 RLN---EAEQVMEMFGDHFGLNIIHVPAENRFLDALAGTDEPEAKRKIIGRVFVEVFDEE 331

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K      +     + D +E+    + + +  K          +  ++ L +  P    
Sbjct: 332 ATKLTEVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKEL 388

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  +  
Sbjct: 389 FKDEVRKIGLELGLPH 404


>gi|239994816|ref|ZP_04715340.1| GMP synthase [Alteromonas macleodii ATCC 27126]
          Length = 370

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 19/185 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           ++  V    +++ +SGG DS    + LH  + D      K + + VD+  LR   A   +
Sbjct: 66  IKEKVGDEEVILGLSGGVDSSVTAMLLHRAIGD------KLTCVFVDNGLLRLNEADQVM 119

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLM-------AAAREARYALISEHAKTINATLIM 123
               D    L I       +      G+        A   E       E  K  NA  + 
Sbjct: 120 EMFGDH-FGLNIIRVDAEERFLDRLKGIEDPELKRKAIGNEFVRVFDEEAGKRENAKWLA 178

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+             +        +  D+ L +  P     ++++R   L+
Sbjct: 179 QGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPEDMELGLVEPLRELFKDEVRKIGLE 235

Query: 184 RNISW 188
             + +
Sbjct: 236 LGLPY 240


>gi|229828822|ref|ZP_04454891.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM
           14600]
 gi|229791985|gb|EEP28099.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM
           14600]
          Length = 361

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 36/133 (27%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---DE--------- 69
           ++V +SGG DS      L           ++          ++ +    +E         
Sbjct: 7   VVVGMSGGVDSSVAAYLLKEEGYRVIGVTMQI--------WQDESACSLEEHGGCCGLSA 58

Query: 70  VRYVSDVCSRLRIAHSVVSWKNS---------------KPQTGLMAAA-REARYALISEH 113
           V     V   + I H V+++K                         A  R  ++  + E 
Sbjct: 59  VEDARRVARMIGIPHYVMNFKAEFQDRVIDYFTDEYLRGRTPNPCIACNRYVKWESLLER 118

Query: 114 AKTINATLIMTAH 126
           +  I A  I T H
Sbjct: 119 SLAIGADYIATGH 131


>gi|229828318|ref|ZP_04454387.1| hypothetical protein GCWU000342_00376 [Shuttleworthia satelles DSM
           14600]
 gi|229792912|gb|EEP29026.1| hypothetical protein GCWU000342_00376 [Shuttleworthia satelles DSM
           14600]
          Length = 410

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 62/252 (24%), Gaps = 46/252 (18%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---DEVRYVS 74
               +++A SGG D+         +   +     +     VD    E      +  RY  
Sbjct: 2   AKDKVVLAYSGGLDTTA------IIPWLKENYGYEVICCCVDCGQGEELDGLEERARYCG 55

Query: 75  D-----------VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
                             I   +             + AR      + E A+  +A  I 
Sbjct: 56  ASKLYIEDITDSFAEDYIIPCVMADAVYENKYLLGTSMARPGIAKKLVEIARKEDAVAIC 115

Query: 124 TAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
              T   +DQ+        R           +     +  + W         R+D   + 
Sbjct: 116 HGATGKGNDQI--------RFELSIKALAPDIEIIAPWRDDKWTLE-----SRQDEIDYC 162

Query: 182 LQRNI--SWCEDPSNTDDRFERVR----VRRFVRDIDLHALYLKMKKFQDLRVKVNNAVA 235
               I   +  D S     + R R    +     +++  +L    K    L      A  
Sbjct: 163 KAHGIDLPFDVDES-----YSRDRNLWHISHEGLELEDPSLEPDYKHLLVLSKTPQEAPD 217

Query: 236 MLIPKYLTVHMR 247
                 +T    
Sbjct: 218 EAEEVTMTFEAG 229


>gi|218200952|gb|EEC83379.1| hypothetical protein OsI_28793 [Oryza sativa Indica Group]
          Length = 1269

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E +R     +    H++ A+SGG DS      +H  + DR         + VD+ L
Sbjct: 225 EEIRTIQSMVGPDEHVICALSGGVDSTVAATLVHKAIGDR------LHCVFVDNGL 274


>gi|194333515|ref|YP_002015375.1| exsB protein [Prosthecochloris aestuarii DSM 271]
 gi|254764366|sp|B4S6H3|QUEC_PROA2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|194311333|gb|ACF45728.1| exsB protein [Prosthecochloris aestuarii DSM 271]
          Length = 226

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V +SGG DS+          ++      + +A+ V++  R   K+ + +   +C    I
Sbjct: 4  VVLLSGGMDSLV-------ATAEADALGYELAAMHVNYGQRTWHKELMAF-RAICDHYGI 55

Query: 83 AHS 85
           H 
Sbjct: 56 RHR 58


>gi|325279322|ref|YP_004251864.1| GMP synthase (glutamine-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
 gi|324311131|gb|ADY31684.1| GMP synthase (glutamine-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
          Length = 509

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +E+    ++  +    +++ +SGG DS    + LH  +          + I VD+ L
Sbjct: 198 SFVETTVAELKQKLGDDRVILGLSGGVDSTVAAMLLHRAVGK------NLTCIFVDNGL 250


>gi|291542284|emb|CBL15394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus bromii L2-63]
          Length = 357

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 59/196 (30%), Gaps = 44/196 (22%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK------------DEV 70
           L+A+SGG DS         +  D +   +K           +               D++
Sbjct: 6   LIAMSGGVDSSVAAFLTKDMGYDATGITLKLF---------DNEDIGEKREKTCCSLDDI 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA-------------RYALISEH---A 114
                VC +L I + V ++K+S  +  +    R               R+    +    A
Sbjct: 57  DDARRVCLKLGIPYYVYNFKDSFKENVIDRFIRAYENGTTPNPCIDCNRFIKFEKLIRRA 116

Query: 115 KTINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           + ++   ++T H      D   +   ++   D  +    +            L    P  
Sbjct: 117 EELDFDCVVTGHYSTIEYDKGADRYLLKKSVDSTKDQSYVLYCLTQRQLAKTLL---PLG 173

Query: 171 RCRREDIRSFLLQRNI 186
              +E +R    +  +
Sbjct: 174 TYTKEKVREIANELGL 189


>gi|261402178|ref|YP_003246402.1| phosphoadenosine phosphosulfate reductase [Methanocaldococcus
           vulcanius M7]
 gi|261369171|gb|ACX71920.1| phosphoadenosine phosphosulfate reductase [Methanocaldococcus
           vulcanius M7]
          Length = 480

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 13/108 (12%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +R   + L  P  ++VA SGG DS+  LI     L         F  + VD  L    ++
Sbjct: 242 IRNISQKLNKP--VIVAFSGGKDSLTTLILAIKALEK------NFDVVFVDTGL--EFEE 291

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN-SKPQTGLMAAAREARYALISEHAK 115
            ++ V +V     I  + +  +N  +        AR+  Y   S+  K
Sbjct: 292 TLKNVEEVEKEYGIKITRLKGENFWEKIKEYGIPARD--YRWCSDVCK 337


>gi|226227156|ref|YP_002761262.1| GMP synthase [Gemmatimonas aurantiaca T-27]
 gi|259647683|sp|C1A3W7|GUAA_GEMAT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226090347|dbj|BAH38792.1| GMP synthase [Gemmatimonas aurantiaca T-27]
          Length = 513

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 30/190 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAK 67
           +R +V    ++  +SGG DS      +H  + D      + + I VD  L     RE  +
Sbjct: 208 IREMVGDRQVICGLSGGVDSSVAAALVHKAIGD------QLTCIFVDTGLLRLHEREQVE 261

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEHAKTIN- 118
             +R      + L I    V  ++            E +  +          + +     
Sbjct: 262 RTMR------AHLGIKLITVRAEDRFLNGLAGEGDPEKKRKIIGHTFIDVFEDASAEAGK 315

Query: 119 -ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A  ++    + D +E+V   S +      +        +  D+   +  P     ++++
Sbjct: 316 NAEFLVQGTLYPDVIESV---SAKGGPSATIKTHHNVGGLKPDMKFKLIEPLRELFKDEV 372

Query: 178 RSFLLQRNIS 187
           R+   +  + 
Sbjct: 373 RNVGRELGLP 382


>gi|160892535|ref|ZP_02073325.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50]
 gi|156865576|gb|EDO59007.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50]
          Length = 362

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 57/196 (29%), Gaps = 42/196 (21%)

Query: 22  ILVAVSGGSDSMGLLIALHS-----------VLSDRSFGKIKFSAISVDHCLRETAKDEV 70
           + V +SGG DS      L             +  D    +I          L   A D+ 
Sbjct: 6   VCVGMSGGVDSSVAAYLLKEQGYNVIGVTMQIWQDEDADQISEHGGCC--GLS--AVDDA 61

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHA 114
           R V    ++L I + V+++K    +                    A  R  ++  +   +
Sbjct: 62  RRV---AAQLEIPYYVMNFKEDFRKYVIDYFVDEYRNGRTPNPCIACNRYVKWESLLRRS 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY----DLNLWISRPFL 170
            +I    I T H    ++E   + S R       G+       LY    D       P  
Sbjct: 119 LSIGGDYIATGHYA--RVEQ--LSSGRYTLRVAKGIEKDQTYALYNLTQDQLSKTLMPVG 174

Query: 171 RCRREDIRSFLLQRNI 186
              +  IR       I
Sbjct: 175 EYNKTQIRQIAADIGI 190


>gi|146329608|ref|YP_001209299.1| GMP synthase [Dichelobacter nodosus VCS1703A]
 gi|146233078|gb|ABQ14056.1| GMP synthase [Dichelobacter nodosus VCS1703A]
          Length = 517

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 25/194 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I   R  +   V    +++ +SGG DS  +   LH V+        + + + VD   LR 
Sbjct: 206 ITEKRREIAEKVGTEKVILGLSGGVDSSVVAALLHEVI------GAQLTCVFVDTGLLRL 259

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS-----------KPQTGLMAAAREARYALISEH 113
              DEV  V      + +  +V+    +            P+       R        E 
Sbjct: 260 HEGDEVMAV--FAQNMGV--NVIRVNAADRFFAALKGVTDPEEKRKTIGRLFIEIFDEEA 315

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK  +A  +     + D +E+      +    + +        +   +NL +  P     
Sbjct: 316 AKIKDAKWLAQGTIYPDVIES---AGSKTGKAQVIKSHHNVGGLPEKMNLSLLEPLRMLF 372

Query: 174 REDIRSFLLQRNIS 187
           ++++R   L  ++ 
Sbjct: 373 KDEVRQLGLALSLP 386


>gi|120402525|ref|YP_952354.1| GMP synthase [Mycobacterium vanbaalenii PYR-1]
 gi|119955343|gb|ABM12348.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium vanbaalenii
           PYR-1]
          Length = 522

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 72/197 (36%), Gaps = 27/197 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++   VR+ +     +  +SGG DS     A+ + L  R+ G  + + + VDH L R  
Sbjct: 205 EALVEQVRTQIGDGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRSG 258

Query: 66  AKDEVR--YVSDVCSRL---RIAHS-------VVSWKNSKPQTGLMAAAR---EARYALI 110
            + +V+  +V+   + L    +A         V + +  +   G           R AL 
Sbjct: 259 ERAQVQRDFVAATGANLVTVDVADRFLEALSGVTNPEGKRKIIGREFIRAFEGAVRDALE 318

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
           S+    +    ++    + D +E+             +        +  DL   +  P  
Sbjct: 319 SQDGSDVPVEFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDLKFTLVEPLR 373

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 374 LLFKDEVRAVGRELGLP 390


>gi|303229103|ref|ZP_07315905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-134-V-Col7a]
 gi|302516227|gb|EFL58167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 353

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 38/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY----VSDVC 77
           I VA+SGG DS   L A   +        I             T  DEV         +C
Sbjct: 5   IAVAMSGGVDSS--LTAAMLLKQGYKVFGITLWLWV-----SGTPYDEVPLAVTDAKKMC 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINATL 121
             L I H ++  ++   +  +    +E  Y                 L+   A  + AT 
Sbjct: 58  DFLGIEHHIIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATH 117

Query: 122 IMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRRE 175
           ++T H    +   +T      +               ++Y++N  I      P     + 
Sbjct: 118 MVTGHYAQVNYNEDTGLYELHKGVDPT-----KDQSYVMYNMNQRILSHIMFPLGGQCKT 172

Query: 176 DIRSFLLQRNIS 187
           + R    + ++ 
Sbjct: 173 ETRKLAAEYDLP 184


>gi|227501721|ref|ZP_03931770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49725]
 gi|227077746|gb|EEI15709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium accolens ATCC 49725]
          Length = 355

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 50/187 (26%), Gaps = 41/187 (21%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-H----CLRETAK-----DEVRYVSDV 76
           SGG DS           +           + +  H      RE A+     ++      +
Sbjct: 2   SGGVDSSV-------AAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 54

Query: 77  CSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINAT 120
           C +L I   V  +     +                        + ++  + +    +   
Sbjct: 55  CDKLGIPFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKGMALGFD 114

Query: 121 LIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            + T H  T DD     YMR  +D  +    + G+      D   +   P     +  IR
Sbjct: 115 AVATGHYATLDDDG---YMRRSKDENKDQSYVLGVISAEELDHCFF---PIGDTPKPQIR 168

Query: 179 SFLLQRN 185
                  
Sbjct: 169 EEAAAHG 175


>gi|125602995|gb|EAZ42320.1| hypothetical protein OsJ_26892 [Oryza sativa Japonica Group]
          Length = 1297

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E +R     +    H++ A+SGG DS      +H  + DR         + VD+ L
Sbjct: 225 EEIRTIQSMVGPDEHVICALSGGVDSTVAATLVHKAIGDR------LHCVFVDNGL 274


>gi|152996127|ref|YP_001340962.1| exsB protein [Marinomonas sp. MWYL1]
 gi|189038923|sp|A6VX48|QUEC_MARMS RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|150837051|gb|ABR71027.1| exsB protein [Marinomonas sp. MWYL1]
          Length = 219

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS        +VL+      +   A+S ++  ++ +K E+   + VC +L 
Sbjct: 6  VVV-YSGGMDS-------FTVLNTAIQNGLDVYALSFNYG-QKHSK-ELEVAAHVCRKLG 55

Query: 82 IAHSVVSWKN 91
          I+H VV    
Sbjct: 56 ISHKVVDITA 65


>gi|304397251|ref|ZP_07379130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. aB]
 gi|304355400|gb|EFM19768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pantoea sp. aB]
          Length = 370

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 51/197 (25%), Gaps = 45/197 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAADDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEH 113
                VC +L +    V++                +  R               A +   
Sbjct: 57  ADAQAVCDKLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A+ + A  I T H       D  ++  +R      ++   L  +    +         P 
Sbjct: 117 AEDLGADFIATGHYVRRHDVD-GQSQLLRGLDGNKDQSYFLYTLSHQQIAQS----LFPV 171

Query: 170 LRCRREDIRSFLLQRNI 186
               + ++R    Q ++
Sbjct: 172 GELEKPEVRRIAEQLDL 188


>gi|237755401|ref|ZP_04584028.1| GMP synthase [glutamine-hydrolyzing] [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692442|gb|EEP61423.1| GMP synthase [glutamine-hydrolyzing] [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 511

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 24/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R +V     + A+SGG DS    + +H+ + D        + I VD+  LR+  +++V 
Sbjct: 208 IRKMVGNKKAICALSGGVDSSVAAVLVHNAIGD------NLTCIFVDNGLLRKGEREQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISEHAKTI-----NATL 121
                     I+  VV  K+      K  T      R+    L  E  +       +   
Sbjct: 262 --KTFRDNFHISLIVVDAKDRFLKALKGITDPEQK-RKIIGNLFIEVFEEEAKKLKDVEY 318

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+V ++      +    + G+ +     +NL +  P     ++++R   
Sbjct: 319 LVQGTLYPDVIESVSVKGPSAVIKTHHNVGGLPE----RMNLKLIEPLRELFKDEVRELG 374

Query: 182 LQRNIS 187
            +  + 
Sbjct: 375 KELGLP 380


>gi|189346042|ref|YP_001942571.1| exsB protein [Chlorobium limicola DSM 245]
 gi|254764319|sp|B3EGF5|QUEC_CHLL2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189340189|gb|ACD89592.1| exsB protein [Chlorobium limicola DSM 245]
          Length = 226

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +L+ +SGG DS+                K++ +A+ V++  R   + E+     +C+  +
Sbjct: 4  VLL-ISGGMDSLVTTAIAAE-------EKLELAAMHVNYGQRTW-QKELECFRRICNHYQ 54

Query: 82 IAHSVVSWKNSKPQTG 97
          I H +        QTG
Sbjct: 55 IRHRLEIEAGYLAQTG 70


>gi|116075784|ref|ZP_01473043.1| hypothetical protein RS9916_40001 [Synechococcus sp. RS9916]
 gi|116067099|gb|EAU72854.1| hypothetical protein RS9916_40001 [Synechococcus sp. RS9916]
          Length = 290

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 40/194 (20%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E +R  +R+      ++VA SGG DS     AL + ++    G  + +AI+    +   
Sbjct: 32  LERLRHEIRAY---GRVVVAYSGGVDS-----ALVATIAQEQLGA-QATAIT---GVSPA 79

Query: 66  -AKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTIN 118
            A   ++      + L + H  V+ +  K        T    A +   +  +   A    
Sbjct: 80  LAPHLLQEARQQAAWLGLRHQEVATEELKDPHYSSNPTDRCFACKRELHRHLGPLAAAAE 139

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRED 176
              ++     DD                   LS     I       +  P   L   +  
Sbjct: 140 GAQVLDGVNADD-------------------LSDHRPGIQAAREAGVMSPLADLGITKMQ 180

Query: 177 IRSFLLQRNISWCE 190
           +R       + W +
Sbjct: 181 VRELSKALGLPWWD 194


>gi|312110082|ref|YP_003988398.1| NAD+ synthetase [Geobacillus sp. Y4.1MC1]
 gi|311215183|gb|ADP73787.1| NAD+ synthetase [Geobacillus sp. Y4.1MC1]
          Length = 246

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 57/210 (27%), Gaps = 54/210 (25%)

Query: 2   FLSPIESVRFFVRSLVYPAHI---LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
               IE +  ++R  V  A +   +V +SGG DS  +   +     D S G I       
Sbjct: 1   MKEKIEKLVQWLRDQVAGAGLNGAVVGISGGIDSAVVAHLIKRAFPDNSLGLIMPC---- 56

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSV-------------VSWKNSKPQTGLMAAAR-- 103
                    ++   V + C    I H +             V  +  +       AAR  
Sbjct: 57  --KSNPKDMEDALKVVESC---GIKHFIIDLTETHNTLFGEVEKQLKEKGEWNETAARLG 111

Query: 104 ------EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
                   R   +   A      ++ T    D+  E               G        
Sbjct: 112 DANTRARLRMTTLYAVANNYGYMVVGT----DNAAEWY------------TGYFTKYG-- 153

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             D  + +  P +   + ++R       + 
Sbjct: 154 --DGGVDLV-PLVHFTKGEVREMARILGVP 180


>gi|150400268|ref|YP_001324035.1| putative ATP binding-like protein [Methanococcus vannielii SB]
 gi|150012971|gb|ABR55423.1| putative ATP binding related protein [Methanococcus vannielii SB]
          Length = 295

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 17/112 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-VSDVCSRLR 81
           ++  SGG DS+  L  L + L  R         +++D        +E      ++     
Sbjct: 75  ILGFSGGKDSVVALYLLVNKLRIRPL------CVTID---NGYLAEEAILNCKNITKHFG 125

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   V++   +K                       I + A+  N   I+T H
Sbjct: 126 VDWLVINKDFTKFFKETISKGESPCRICSSMNMHEIWQFARQTNINTIVTGH 177


>gi|89902516|ref|YP_524987.1| tRNA-specific 2-thiouridylase MnmA [Rhodoferax ferrireducens T118]
 gi|122478272|sp|Q21RZ7|MNMA_RHOFD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|89347253|gb|ABD71456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodoferax ferrireducens T118]
          Length = 384

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 34/134 (25%), Gaps = 35/134 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++V +SGG DS      L     +     +K               D+  Y     
Sbjct: 6   SGQRVVVGLSGGVDSAVTAWLLKQQGYEVIGIFMKNW----------EDDDDSEYCSSNV 55

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISE 112
                + V   + I    V++             RE +                     +
Sbjct: 56  DFIDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLD 115

Query: 113 HAKTINATLIMTAH 126
           HA  + A  I T H
Sbjct: 116 HALRLGAQKIATGH 129


>gi|270294933|ref|ZP_06201134.1| tRNA methyl transferase [Bacteroides sp. D20]
 gi|270274180|gb|EFA20041.1| tRNA methyl transferase [Bacteroides sp. D20]
          Length = 350

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 62/205 (30%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRY 72
           +     +L+ +SGG+DS    + L     + +    +F            A DE   +  
Sbjct: 1   MKSDKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY----------EAGDETGYLED 50

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAR------------EARYALISEHAKT 116
              +  +L + H     +       +        R            E ++AL+++ A  
Sbjct: 51  ARALALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADE 110

Query: 117 INATLIMTAH---------------TFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                I T H                 D D+ +T +             L G+   IL  
Sbjct: 111 KGIYWISTGHYVRKVLSGGKYYIAPAADKDKDQTFF-------------LWGLKQDILQR 157

Query: 161 LNLWISRPFLRCRREDIRSFLLQRN 185
           +      P     + + RS+  +R 
Sbjct: 158 M----LLPMGDITKNEARSYAAERG 178


>gi|124024748|ref|YP_001013864.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prochlorococcus marinus str. NATL1A]
 gi|226739660|sp|A2BZD9|GUAA_PROM1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123959816|gb|ABM74599.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. NATL1A]
          Length = 528

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           E+V   V+  V    +L+A+SGG DS  L   L+  +
Sbjct: 213 EAVSQ-VQQQVGDKKVLLALSGGVDSSTLAFLLNKAI 248


>gi|330011622|ref|ZP_08307127.1| protein ExsB [Klebsiella sp. MS 92-3]
 gi|328534106|gb|EGF60743.1| protein ExsB [Klebsiella sp. MS 92-3]
          Length = 233

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 R-IAHSVVSW 89
            +AH V+  
Sbjct: 54 GAVAHKVLDV 63


>gi|304314570|ref|YP_003849717.1| asparagine synthase [Methanothermobacter marburgensis str. Marburg]
 gi|302588029|gb|ADL58404.1| asparagine synthase [Methanothermobacter marburgensis str. Marburg]
          Length = 471

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 41/143 (28%), Gaps = 36/143 (25%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E+V+   R L   A +    SGG DS  L + L   L       I    +        +A
Sbjct: 213 EAVKKRTRGLNKAALV---FSGGVDSTLLAVLLSEYL------DITLYTV----GTHGSA 259

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA---------------------AAREA 105
              V + S     L +  +V+       ++ L                       A+REA
Sbjct: 260 D--VEFASRAAEDLGMDLNVIEVTEKTVRSALPHVLGAIEVYSPMQIAIAMPLYLASREA 317

Query: 106 RYALISEHAKTINATLIMTAHTF 128
             A          A  +   +  
Sbjct: 318 SAAGFRVMFSGQGADELFAGYHR 340


>gi|295110441|emb|CBL24394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus obeum A2-162]
          Length = 373

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 38/191 (19%)

Query: 24  VAVSGGSDSMGLLIALHSVLSDRSFGKIKF-----------SAISVDHCLRETAKDEVRY 72
           +A+SGG DS      +     D +   +K             A         +  ++ R 
Sbjct: 7   IAMSGGVDSSVAAYLMVQNGYDCAGATLKLYDNPQCSFPGHRACC-----TPSDTEDARS 61

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISEHAKT 116
           V    +RL + + V    +    + +   A                R  +++ + + A+ 
Sbjct: 62  V---AARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKARE 118

Query: 117 INATLIMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +    I + H    +   ET     ++           +       L   +  P     +
Sbjct: 119 LGCEYIASGHYARREQDPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLF-PLGGYTK 177

Query: 175 EDIRSFLLQRN 185
           ++IR    ++ 
Sbjct: 178 KEIRHIAQEQG 188


>gi|172035083|ref|YP_001801584.1| CHP268-containing protein [Cyanothece sp. ATCC 51142]
 gi|171696537|gb|ACB49518.1| CHP268-containing protein [Cyanothece sp. ATCC 51142]
          Length = 276

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 33/175 (18%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLR 81
           L+A SGG DS  +    + VL DRS   +  +A+        +   +E+       + + 
Sbjct: 20  LIAYSGGIDSTLVAKVAYDVLGDRS---LAVTAV------SPSLLPEELEDAKIQAATIG 70

Query: 82  IAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           I H +V+ +       +          +   +  +   A       ++     DD     
Sbjct: 71  IPHELVNTQEMNNPNYTSNPVNRCYFCKSELHDTLKPLALKRGYPYVVDGVNADD----- 125

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            +R  R          G+           ++   +   + ++R       + W +
Sbjct: 126 -LRDYR---------PGIQAAKERGARSPLAE--VGITKLEVRQLSQGLGLPWWD 168


>gi|116327057|ref|YP_796777.1| sulfate adenylyltransferase subunit 2 [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116332285|ref|YP_802003.1| sulfate adenylyltransferase subunit 2 [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116119801|gb|ABJ77844.1| Phosphoadenylyl-sulfate reductase (thioredoxin) [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125974|gb|ABJ77245.1| Phosphoadenylyl-sulfate reductase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 305

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETA 66
           +R        PA +    SGG DS+ L+      L     GK  F  + +D  H  +E  
Sbjct: 24  LRETASQFERPALL---FSGGKDSITLVHL---ALKAFRPGKFPFPLVHIDTGHNFQEAL 77

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSK 93
               +  S +  +L + +   S    K
Sbjct: 78  DFRDKLASKIGEKLIVRYVQDSIDQGK 104


>gi|111023428|ref|YP_706400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus jostii RHA1]
 gi|122955129|sp|Q0S2J4|MNMA_RHOSR RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|110822958|gb|ABG98242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodococcus jostii RHA1]
          Length = 364

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------AKD 68
            +L A+SGG DS           +           + +   L               +K+
Sbjct: 2   RVLAAMSGGVDS-------AVAAARAVAAGHDVVGVHLA--LSAEPGTLRTGSRGCCSKE 52

Query: 69  EVRYVSDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISE 112
           +          L I   V               V+   +            + ++A +++
Sbjct: 53  DAGDARRAADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALAD 112

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  +    + T H    QLE   +R   D  +    + G+         ++   P    
Sbjct: 113 RAIALGFDAVATGHYA--QLENGVLRRAVDADKDQSYVLGVLTAEQLSRAMF---PVGDT 167

Query: 173 RREDIRSFLLQRNIS 187
            ++ IR    +R ++
Sbjct: 168 PKDRIREEAAERGLA 182


>gi|294783011|ref|ZP_06748335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium sp. 1_1_41FAA]
 gi|294479889|gb|EFG27666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Fusobacterium sp. 1_1_41FAA]
          Length = 362

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 12/76 (15%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + VA+SGG DS  +   L                +++     +T KDE      VC  L
Sbjct: 25 KVGVAMSGGVDSSTVAYLLKQ-------QGYDIFGVTM-----KTFKDEDSDAKKVCGDL 72

Query: 81 RIAHSVVSWKNSKPQT 96
           I H V+  ++   + 
Sbjct: 73 GIEHYVLDVRDEFKEK 88


>gi|222528233|ref|YP_002572115.1| exsB protein [Caldicellulosiruptor bescii DSM 6725]
 gi|254764298|sp|B9MMB0|QUEC_ANATD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|222455080|gb|ACM59342.1| exsB protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 221

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V +SGG DS  LL        D      +  AIS  +  ++ +K E+ +    CS L 
Sbjct: 4  VVV-LSGGMDSTTLLY-------DVKSQGYEVFAISFLYG-QKHSK-ELEFAKKTCSLLS 53

Query: 82 IAHSVVSW 89
          I + +V  
Sbjct: 54 IPYKIVDI 61


>gi|160896253|ref|YP_001561835.1| tRNA-specific 2-thiouridylase MnmA [Delftia acidovorans SPH-1]
 gi|205816627|sp|A9BS40|MNMA_DELAS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|160361837|gb|ABX33450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Delftia acidovorans SPH-1]
          Length = 372

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 50/196 (25%), Gaps = 38/196 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD--- 75
              ++V +SGG DS      L     +     +K               D+  Y S    
Sbjct: 3   KHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNW----------EDDDDSEYCSSNVD 52

Query: 76  ------VCSRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEH 113
                 V   + I    V++ +           RE +                     +H
Sbjct: 53  FVDAAAVADVVGIEIEHVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDH 112

Query: 114 AKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           A  + A  I T H        +T      +           +       L+  +  P   
Sbjct: 113 AMRLGAEKIATGHYARVRQNPDTQLFELLKGLDPAKDQSYFLHRLNQAQLSRSMF-PVGE 171

Query: 172 CRREDIRSFLLQRNIS 187
            ++ ++R    +  + 
Sbjct: 172 LKKTEVRRIAEEIGLP 187


>gi|225378572|ref|ZP_03755793.1| hypothetical protein ROSEINA2194_04240 [Roseburia inulinivorans DSM
           16841]
 gi|225209586|gb|EEG91940.1| hypothetical protein ROSEINA2194_04240 [Roseburia inulinivorans DSM
           16841]
          Length = 410

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 62/233 (26%), Gaps = 58/233 (24%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRY-- 72
              +++A SGG D+         +   +     +     VD C +E       +  +   
Sbjct: 2   KEKVILAYSGGLDTTA------IIPWLKETYGYEVICCCVD-CGQEEELNGLDERAKLSG 54

Query: 73  ---------VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
                    V + C    +     +           + AR      + E A+   AT I 
Sbjct: 55  ASKLYIEDIVDEFCDDYIVPCVQANAVYENKYLLGTSMARPGIAKKLVEIARKEGATAIC 114

Query: 124 TAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC-----RRED 176
              T   +DQ                  +           +L I  P+         R+D
Sbjct: 115 HGATGKGNDQ------------------IRFELSIKALAPDLKIIAPWRDSNWKLQSRQD 156

Query: 177 IRSFLLQRNI--SWCEDPSNTDDRFERVR----VRRFVRDIDLHALYLKMKKF 223
              F     I   +  D S     + R R    +     +++  +L    +  
Sbjct: 157 EIDFCTAHGIHLPFSVDSS-----YSRDRNLWHISHEGLELEDPSLEPNYEHL 204


>gi|220913563|ref|YP_002488872.1| sulfate adenylyltransferase subunit 2 [Arthrobacter
           chlorophenolicus A6]
 gi|219860441|gb|ACL40783.1| sulfate adenylyltransferase, small subunit [Arthrobacter
           chlorophenolicus A6]
          Length = 322

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V     PA +    SGG DS+ +L            GK+ F  + VD  H 
Sbjct: 37  EAIHIIREVVAEFEKPALL---FSGGKDSVVMLHLATKAF---WPGKVPFPVLHVDTGHN 90

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
             E      R V     RL +   V S +    +  L   A
Sbjct: 91  FPEVIDFRDRTV----ERLGLKLVVGSVQEFIDRGELAERA 127


>gi|224074941|ref|XP_002304500.1| predicted protein [Populus trichocarpa]
 gi|222841932|gb|EEE79479.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 11/88 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E +R    ++    H++ A+SGG DS      +H  + DR         I VD+  LR  
Sbjct: 215 EEIRVINDAVGPEEHVICALSGGVDSTVAATLVHKAIGDR------LHCIFVDNGLLR-- 266

Query: 66  AKDEVRYVSD-VCSRLRIAHSVVSWKNS 92
              E   V++   S L +  + V   N 
Sbjct: 267 -YKERERVAETFESDLHLPVTCVDASNE 293


>gi|218665835|ref|YP_002425525.1| hypothetical protein AFE_1053 [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|218518048|gb|ACK78634.1| conserved domain protein [Acidithiobacillus ferrooxidans ATCC
          23270]
          Length = 574

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-ISVDHC--------LR 63
          ++ L+    + VA SGG DS  +L                 +A I V H         +R
Sbjct: 9  MQRLLCDRPVSVAWSGGKDSSVVLNLTMQAAKAVLESGQTIAAPILVTHGDTGIENPEIR 68

Query: 64 ETAKDEVRYVSDVCSRLRIAHSV 86
            A  E+  +     R RI  +V
Sbjct: 69 AYASTEIGRLRRYAERHRIPLAV 91


>gi|291618401|ref|YP_003521143.1| GuaA [Pantoea ananatis LMG 20103]
 gi|291153431|gb|ADD78015.1| GuaA [Pantoea ananatis LMG 20103]
 gi|327394793|dbj|BAK12215.1| GMP synthase [glutamine-hydrolyzing] GuaA [Pantoea ananatis
           AJ13355]
          Length = 526

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 65/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE     +R  V    +++ +SGG DS    + LH  +          + + VD+  L
Sbjct: 213 KIIEDAVERLRVQVGNDKVILGLSGGVDSSVTAMLLHRAIGK------NLTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALI-----SE 112
           R     E   V D       +    V     + ++        A R+    +       +
Sbjct: 267 RLN---EAEQVLDMFGDHFGLNIVHVDGEARFLDALAGENDPEAKRKIIGRVFVEVFDEQ 323

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +  +   +     + D +E+    + + +  K          +  ++ + +  P    
Sbjct: 324 ALRLEDVKWLAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKMGLVEPLREL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 381 FKDEVRKIGLELGLPY 396


>gi|262306095|gb|ACY45640.1| gln amidotransferase [Polyxenus fasciculatus]
          Length = 196

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          +++  V  + +L+ VSGG DS      LH  LS+      +  A+ +D
Sbjct: 36 YIQETVGKSKVLMLVSGGVDSAVCAALLHKALSED-----QVIAVHID 78


>gi|225405420|ref|ZP_03760609.1| hypothetical protein CLOSTASPAR_04640 [Clostridium asparagiforme
           DSM 15981]
 gi|225043067|gb|EEG53313.1| hypothetical protein CLOSTASPAR_04640 [Clostridium asparagiforme
           DSM 15981]
          Length = 440

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 59/212 (27%), Gaps = 43/212 (20%)

Query: 11  FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----------- 59
            F R       +++A SGG D+         +   +     +     +D           
Sbjct: 15  RFRRVFRMKEKVILAYSGGLDTTT------IIPWLKENFGYEVICCCIDCGQGSELDGLD 68

Query: 60  --HCLRETAKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
               L   +K      V D C    +     +           + AR A    + + A+ 
Sbjct: 69  ERAKLSGASKLYIEDLVDDFCDNYIVPCVKANAVYENKYLLGTSMARPAIAKCLVDIARK 128

Query: 117 INATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL-NLWISRPFLRCR 173
             A  I    T   +DQ+        R           +     + + ++W  +      
Sbjct: 129 EGAAAICHGATGKGNDQI--------RFELSIKSLAPDLKIIAPWRMTDVWTLK-----S 175

Query: 174 REDIRSFLLQRNI--SWCEDPSNTDDRFERVR 203
           R+D   +  Q  I   +  D S     + R R
Sbjct: 176 RDDEIEYCKQHGIDLPFSMDSS-----YSRDR 202


>gi|219848571|ref|YP_002463004.1| GMP synthase [Chloroflexus aggregans DSM 9485]
 gi|219542830|gb|ACL24568.1| GMP synthase, large subunit [Chloroflexus aggregans DSM 9485]
          Length = 513

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 28/199 (14%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
             IE VR     +     ++ A+SGG DS    + +H  + DR       + + VD+  L
Sbjct: 203 EAIERVRA---QVGPHGRVICALSGGVDSAVAALIIHHAIGDR------LTCVFVDNGLL 253

Query: 63  RETAKDEVRYVSDVCSRL-RIAHSVVSWKNS---------KPQTGLMAAAREARYALISE 112
           R     E   V +       +    V  +            P+        +       E
Sbjct: 254 RAG---EAEQVINTFREHFHVPLIAVDAREEFLAALEGVVDPEQKRKIIGEKFIRIFERE 310

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                +   +     + D +E+      +    K          +  D+ L +  P    
Sbjct: 311 ARSLADVEFLAQGTLYPDVIESTAPDRPKAAKIK---THHNVGGLPADMQLKLVEPLRYL 367

Query: 173 RREDIRSFLLQRNIS--WC 189
            ++++R+  LQ  +   W 
Sbjct: 368 FKDEVRAAGLQLGLPEEWV 386


>gi|45190952|ref|NP_985206.1| AER350Wp [Ashbya gossypii ATCC 10895]
 gi|74693330|sp|Q756B7|GUAA_ASHGO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|44984020|gb|AAS53030.1| AER350Wp [Ashbya gossypii ATCC 10895]
          Length = 525

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/202 (20%), Positives = 72/202 (35%), Gaps = 30/202 (14%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I++    +R+LV P A ++ AVSGG DS      +   + DR      F AI VD+  
Sbjct: 207 NFIDTEIQRIRTLVGPTAEVIGAVSGGVDSTVAAKLMTEAIGDR------FHAILVDNGV 260

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAAREA---------R 106
           LR     E   V   +   L I  +VV          K  T      +           R
Sbjct: 261 LRLN---EAANVKKILGEGLGINLTVVDASEEFLTKLKGVTDPEKKRKIIGNTFIHVFER 317

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            A   +         ++    + D +E++  +      +    + G+ D    ++ L + 
Sbjct: 318 EAARIQPKNGEEIEFLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLD----NMKLKLI 373

Query: 167 RPFLRCRREDIRSFLLQRNISW 188
            P     ++++R       IS 
Sbjct: 374 EPLRELFKDEVRHLGELLGISH 395


>gi|308067861|ref|YP_003869466.1| hypothetical protein PPE_01080 [Paenibacillus polymyxa E681]
 gi|305857140|gb|ADM68928.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 227

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS   L       ++          ++ D+  R   K E+   + +   L 
Sbjct: 8  VVV-FSGGQDSTTCLFWAKKHFAE-------VETVTFDYGQRH--KQEIEVAAGIARELG 57

Query: 82 IAHSVVS 88
          +  +V+ 
Sbjct: 58 VPQTVLD 64


>gi|255066218|ref|ZP_05318073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sicca ATCC 29256]
 gi|255049428|gb|EET44892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria sicca ATCC 29256]
          Length = 367

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 51/196 (26%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 5   QQPSNIIVGLSGGVDSSVTAALLKQEGYQVRGVFMQNW----------EDDDNDEYCSIK 54

Query: 75  --------------------DVCSRL--RIAHSVVSWKNSKPQTGLMAAA-REARYALIS 111
                               +  ++    +    +   ++            E ++    
Sbjct: 55  QDSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +   +       +     + L   I  P   
Sbjct: 115 DYAIEQGADTIATGHYARKEVRNGTHYLLKGLDQNKDQSYFLYRLKPFQLERAIF-PLGD 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    + N+ 
Sbjct: 174 LEKPEVRRLAAEFNLP 189


>gi|153833106|ref|ZP_01985773.1| ExsB protein [Vibrio harveyi HY01]
 gi|156974666|ref|YP_001445573.1| queuosine biosynthesis protein QueC [Vibrio harveyi ATCC
          BAA-1116]
 gi|167016455|sp|A7MW43|QUEC_VIBHB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|148870674|gb|EDL69581.1| ExsB protein [Vibrio harveyi HY01]
 gi|156526260|gb|ABU71346.1| hypothetical protein VIBHAR_02384 [Vibrio harveyi ATCC BAA-1116]
          Length = 232

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     V   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAEKVAKDL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 GVAAHKV 60


>gi|330445254|ref|ZP_08308906.1| guaA GMP synthetase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489445|dbj|GAA03403.1| guaA GMP synthetase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 527

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 59/214 (27%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS---------------- 47
           + IE     ++  V    +++ +SGG DS  + + +H  + D+                 
Sbjct: 214 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVAMLIHRAIGDKLTCVFVDNGLLRLNEGQ 273

Query: 48  ------FGKIKFSAISVDHCLRETAKDEVRYVSDV-------CSRLRIAHSVVSWKNSKP 94
                   K   + + V        + E R++S +         R +I H  V   + + 
Sbjct: 274 QVMDMFGDKFGLNIVHV--------QAEERFLSALAGIDDPEAKRKKIGHVFVDVFDEES 325

Query: 95  QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154
           +                   K  NA  +     + D +E+    + +      +      
Sbjct: 326 K-------------------KLSNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNV 363

Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
             +  D+ + +  P     ++++R   L+  + +
Sbjct: 364 GGLPDDMEMGLVEPLKELFKDEVRKIGLELGLPY 397


>gi|325964284|ref|YP_004242190.1| sulfate adenylyltransferase subunit 2 [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323470371|gb|ADX74056.1| sulfate adenylyltransferase subunit 2 [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 314

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V     PA +    SGG DS+ +L            GK+ F  + VD  H 
Sbjct: 29  EAIHIIREVVAEFEKPALL---FSGGKDSVVMLHLATKAF---WPGKVPFPVLHVDTGHN 82

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
             E      R V     RL +   V S +    +  L   A
Sbjct: 83  FPEVIDFRDRTV----ERLGLKLVVGSVQEFIDRGELAERA 119


>gi|303239107|ref|ZP_07325637.1| PP-loop domain protein [Acetivibrio cellulolyticus CD2]
 gi|302593445|gb|EFL63163.1| PP-loop domain protein [Acetivibrio cellulolyticus CD2]
          Length = 311

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 5  PIESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSD 45
           IE  R  +R     +   + V+ SGG DS  LL  + S+  +
Sbjct: 21 KIEKSRLRIREFYEHFNGKVTVSFSGGKDSTVLLHLVRSIYPE 63


>gi|302871600|ref|YP_003840236.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574459|gb|ADL42250.1| PP-loop domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 268

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +LVA SGG DS  LL     VL D+       S       L    + E      +   + 
Sbjct: 24 VLVAFSGGVDSTFLLKVSFDVLGDKVIAVFSSSV------LSPQREKEDA--EKIAKDIG 75

Query: 82 IAHSVVSWKN 91
              V+    
Sbjct: 76 AKLIVIERDV 85


>gi|256831345|ref|YP_003160072.1| ExsB family protein [Jonesia denitrificans DSM 20603]
 gi|256684876|gb|ACV07769.1| ExsB family protein [Jonesia denitrificans DSM 20603]
          Length = 241

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           + + +SGG DS+ LL  L +          +  A++ +      A++E    + + + L
Sbjct: 5  KVALLLSGGPDSVTLLYDLLA-------QGHEVVALTYNFG-EAEAQNERDAATAIAAEL 56

Query: 81 RIAHSVVSWKNSKPQ 95
           + H    +     +
Sbjct: 57 EVEHHFFDFSGPLKE 71


>gi|223040263|ref|ZP_03610541.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Campylobacter rectus RM3267]
 gi|222878516|gb|EEF13619.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           (GMP synthetase) [Campylobacter rectus RM3267]
          Length = 510

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 66/185 (35%), Gaps = 23/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L AVSGG DS      L + +            + VD+  LR   +++V 
Sbjct: 208 IKETVGNKKVLCAVSGGVDSSVTAALLAAAIPQ------NLILVFVDNGLLRTGEREQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKTINATLIM 123
             +   ++L +    +    +  +  +     E +          +  + AK  +    +
Sbjct: 262 --ATFRTKLGVELVSIDASKTFLERLVGVTEPEKKRKIIGETFIEIFEKEAKKHDNVKFL 319

Query: 124 TAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
              T   D +E+          +    + G+ D + ++    +  P     ++++R   L
Sbjct: 320 AQGTLYTDIIESSV-AGSSKTIKSHHNVGGLPDWMSFE----LIEPLREIFKDEVRQLGL 374

Query: 183 QRNIS 187
           +  +S
Sbjct: 375 ELGLS 379


>gi|161504368|ref|YP_001571480.1| queuosine biosynthesis protein QueC [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189038940|sp|A9MM16|QUEC_SALAR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|160865715|gb|ABX22338.1| hypothetical protein SARI_02479 [Salmonella enterica subsp.
          arizonae serovar 62:z4,z23:--]
          Length = 231

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  ALH           +   ++ D+  R  A+ +V     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLAQALHQYD--------EVHCVTFDYGQRHRAEIDVA--RSLALKL 53

Query: 81 RI 82
           +
Sbjct: 54 GV 55


>gi|152982955|ref|YP_001353959.1| LPS biosynthesis protein WbpG [Janthinobacterium sp. Marseille]
 gi|151283032|gb|ABR91442.1| LPS biosynthesis protein WbpG [Janthinobacterium sp. Marseille]
          Length = 382

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DS  L+  +H+         ++  A+  D+     +K     + ++  +L I
Sbjct: 72  IIGVSGGCDSSYLVHTMHA-------AGLRLLAVHFDNTW--NSKVATENIHNLLEKLGI 122

Query: 83  AHSVVSWKNSK 93
               +   N +
Sbjct: 123 DLFTIVVNNKE 133


>gi|312869093|ref|ZP_07729267.1| argininosuccinate synthase [Lactobacillus oris PB013-T2-3]
 gi|311095339|gb|EFQ53609.1| argininosuccinate synthase [Lactobacillus oris PB013-T2-3]
          Length = 409

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 41/187 (21%)

Query: 18  YPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVD--HCL------RETAK- 67
               I++A SGG D S+ +   ++              A  +D    L       + A  
Sbjct: 2   AKEKIVLAYSGGLDTSVAIAWLMNK--------GYDVIACCIDVGEGLDLDAIQHKAAAI 53

Query: 68  -DEVRYV----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                 V     D   +  +    V     +    + A +R      +   AK   AT I
Sbjct: 54  GAWKSVVIDAKRDFAEQFVLPALQVHAMYEQKYPLVSALSRPLIVQKLVGVAKEYGATAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
               T   +DQ+                G+  +   +  +  +          RE+   +
Sbjct: 114 AHGCTGKGNDQV------------RFEAGIHALAPEMKIEDPIR----DWHWSREEEIQY 157

Query: 181 LLQRNIS 187
               NI 
Sbjct: 158 AKDNNIP 164


>gi|295399358|ref|ZP_06809340.1| NAD+ synthetase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978824|gb|EFG54420.1| NAD+ synthetase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 246

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 57/210 (27%), Gaps = 54/210 (25%)

Query: 2   FLSPIESVRFFVRSLVYPAHI---LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
               IE +  ++R  V  A +   +V +SGG DS  +   +     D S G I       
Sbjct: 1   MKEKIEKLVQWLRDQVTGAGLNGAVVGISGGIDSAVVAHLIKRAFPDNSLGLIMPC---- 56

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSV-------------VSWKNSKPQTGLMAAAR-- 103
                    ++   V + C    I H +             V  +  +       AAR  
Sbjct: 57  --KSNPKDMEDALKVVESC---GIKHFIIDLTETHNTLFGEVEKQLKEKGEWNETAARLG 111

Query: 104 ------EARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI 157
                   R   +   A      ++ T    D+  E               G        
Sbjct: 112 DANTRARLRMTTLYAVANNYGYMVVGT----DNAAEWY------------TGYFTKYG-- 153

Query: 158 LYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             D  + +  P +   + ++R       + 
Sbjct: 154 --DGGVDLV-PLVHFTKGEVREMARVLGVP 180


>gi|157146939|ref|YP_001454258.1| queuosine biosynthesis protein QueC [Citrobacter koseri ATCC
          BAA-895]
 gi|167016423|sp|A8AK09|QUEC_CITK8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|157084144|gb|ABV13822.1| hypothetical protein CKO_02716 [Citrobacter koseri ATCC BAA-895]
          Length = 231

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  ALH           +   ++ D+  R  A+ +V    D+  +L
Sbjct: 5  VVV-FSGGQDSTTCLAQALHQYD--------EVHCVTFDYGQRHRAEIDVA--RDLALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|291613933|ref|YP_003524090.1| GMP synthase, large subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584045|gb|ADE11703.1| GMP synthase, large subunit [Sideroxydans lithotrophicus ES-1]
          Length = 526

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 70/185 (37%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETAKDE 69
           +++ V    +++ +SGG DS      +H  + D      + + + VD+    L E A+  
Sbjct: 216 IKAQVGSEEVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRLNEGAQVM 269

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA-------AAREARYALISEHAKTINATLI 122
             +  ++   +++ H   S +  K   G+           RE       E AK   A  +
Sbjct: 270 ETFAKNL--HMKVIHVDASSEFMKHLAGVSDPEQKRKIIGREFVEVFQRESAKLKQAKWL 327

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+   ++++ +  K          +   ++L +  P     ++++R   +
Sbjct: 328 AQGTIYPDVIESASAKTKKAHTIKS---HHNVGGLPESMHLKLLEPLRELFKDEVRELGV 384

Query: 183 QRNIS 187
              + 
Sbjct: 385 ALGLP 389


>gi|255654281|ref|ZP_05399690.1| GMP synthase [Clostridium difficile QCD-23m63]
 gi|296452570|ref|ZP_06894265.1| GMP synthase (glutamine-hydrolyzing) [Clostridium difficile NAP08]
 gi|296881018|ref|ZP_06904963.1| GMP synthase (glutamine-hydrolyzing) [Clostridium difficile NAP07]
 gi|296258593|gb|EFH05493.1| GMP synthase (glutamine-hydrolyzing) [Clostridium difficile NAP08]
 gi|296427977|gb|EFH13879.1| GMP synthase (glutamine-hydrolyzing) [Clostridium difficile NAP07]
          Length = 511

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +     L A+SGG DS    + +H  + D        + I VDH  LR+   ++V 
Sbjct: 209 LKEKIGDKKALCALSGGVDSSVAAVLIHKAIGD------NLTCIFVDHGLLRKNEGNDVE 262


>gi|126697769|ref|YP_001086666.1| GMP synthase [Clostridium difficile 630]
 gi|255099361|ref|ZP_05328338.1| GMP synthase [Clostridium difficile QCD-63q42]
 gi|255305194|ref|ZP_05349366.1| GMP synthase [Clostridium difficile ATCC 43255]
 gi|123067183|sp|Q18CT8|GUAA_CLOD6 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|115249206|emb|CAJ67019.1| Glutamine amidotransferase [Clostridium difficile]
          Length = 511

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +     L A+SGG DS    + +H  + D        + I VDH  LR+   ++V 
Sbjct: 209 LKEKIGDKKALCALSGGVDSSVAAVLIHKAIGD------NLTCIFVDHGLLRKNEGNDVE 262


>gi|254973858|ref|ZP_05270330.1| GMP synthase [Clostridium difficile QCD-66c26]
 gi|255091243|ref|ZP_05320721.1| GMP synthase [Clostridium difficile CIP 107932]
 gi|255312902|ref|ZP_05354485.1| GMP synthase [Clostridium difficile QCD-76w55]
 gi|255515661|ref|ZP_05383337.1| GMP synthase [Clostridium difficile QCD-97b34]
 gi|255648755|ref|ZP_05395657.1| GMP synthase [Clostridium difficile QCD-37x79]
 gi|260681975|ref|YP_003213260.1| GMP synthase [Clostridium difficile CD196]
 gi|260685573|ref|YP_003216706.1| GMP synthase [Clostridium difficile R20291]
 gi|306518872|ref|ZP_07405219.1| GMP synthase [Clostridium difficile QCD-32g58]
 gi|260208138|emb|CBA60429.1| GMP synthase [glutamine-hydrolyzing] [Clostridium difficile CD196]
 gi|260211589|emb|CBE01801.1| GMP synthase, glutamine-hydrolyzing [Clostridium difficile R20291]
          Length = 511

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +     L A+SGG DS    + +H  + D        + I VDH  LR+   ++V 
Sbjct: 209 LKEKIGDKKALCALSGGVDSSVAAVLIHKAIGD------NLTCIFVDHGLLRKNEGNDVE 262


>gi|86134145|ref|ZP_01052727.1| GMP synthase [Polaribacter sp. MED152]
 gi|85821008|gb|EAQ42155.1| GMP synthase [Polaribacter sp. MED152]
          Length = 511

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +ES    ++  V    +++ +SGG DS    + LH  +            I V++ L
Sbjct: 199 SFVESTVDAIKEKVGNDKVVLGLSGGVDSSVAAVLLHKAIGK------NLYCIFVNNGL 251


>gi|50122130|ref|YP_051297.1| GMP synthase [Pectobacterium atrosepticum SCRI1043]
 gi|81644335|sp|Q6D288|GUAA_ERWCT RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49612656|emb|CAG76106.1| GMP synthase [glutamine-hydrolyzing] [Pectobacterium atrosepticum
           SCRI1043]
          Length = 525

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R  V    +++ +SGG DS    + LH  + DR       + + VD+  LR   A   +
Sbjct: 221 IREQVGNDSVILGLSGGVDSSVTAMLLHRAIGDR------LTCVFVDNGLLRLNEADQVL 274

Query: 71  RYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATL 121
                      +    V+ ++          +P+       R        E  K      
Sbjct: 275 EM---FGDNFGLNIVHVAAEDRFLNELAGEDEPEAKRKIIGRVFVEVFDEEANKQAEVKW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    + + +  K          +  ++ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIESAASATGKAHVIKS---HHNVGGLPKEMKLGLVEPLKELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|317124292|ref|YP_004098404.1| sulfate adenylyltransferase subunit 2 [Intrasporangium calvum DSM
           43043]
 gi|315588380|gb|ADU47677.1| sulfate adenylyltransferase subunit 2 [Intrasporangium calvum DSM
           43043]
          Length = 371

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I+ +R     L  PA +    SGG DS+ +L              I F  + VD  H 
Sbjct: 86  ESIQVIREIAAELERPALL---FSGGKDSVVMLHLAVKAF---WPAPIPFPVLHVDTGHN 139

Query: 62  LRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
             E  A  +     +   RL +   V S ++      L   A
Sbjct: 140 FPEVLAYRD-----ETVERLGLRLEVASVQDYIDDGRLRERA 176


>gi|317052362|ref|YP_004113478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurispirillum indicum S5]
 gi|316947446|gb|ADU66922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfurispirillum indicum S5]
          Length = 345

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 22/126 (17%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V    +LVA+SGG DS      L           +K      +  + E     +  V  V
Sbjct: 3   VPRKKVLVAMSGGVDSSMTTKLLLEQGYPVEGCYMKL---HGNEQMHE---QNIARVERV 56

Query: 77  CSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINAT 120
                I   V+  ++   Q+                      R  ++  + E A+ ++  
Sbjct: 57  ARYFNIPWHVLDRQDLFHQSVYQPFIDIYSQGQTPNPCTFCNRLIKFGTLFEFARELDCH 116

Query: 121 LIMTAH 126
            + T H
Sbjct: 117 HLATGH 122


>gi|237730421|ref|ZP_04560902.1| queuosine biosynthesis protein QueC [Citrobacter sp. 30_2]
 gi|226905960|gb|EEH91878.1| queuosine biosynthesis protein QueC [Citrobacter sp. 30_2]
          Length = 231

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  ALH           +   ++ D+  R  A+ +V    D+  +L
Sbjct: 5  VVV-FSGGQDSTTCLAQALHQYD--------EVHCVTFDYGQRHRAEIDVA--RDLALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|160888582|ref|ZP_02069585.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492]
 gi|156861896|gb|EDO55327.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492]
          Length = 350

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 61/205 (29%), Gaps = 62/205 (30%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRY 72
           +     +L+ +SGG+DS    + L     + +    +F            A DE   +  
Sbjct: 1   MKSDKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY----------EAGDETGYLED 50

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAR------------EARYALISEHAKT 116
              +  +L + H     +       +        R            E ++AL+++ A  
Sbjct: 51  ARALALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADE 110

Query: 117 INATLIMTAH---------------TFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYD 160
                I T H                 D D+ +T +             L G+   IL  
Sbjct: 111 KGIYWISTGHYVRKVLSGGKYYIAPAADKDKDQTFF-------------LWGLKQDILQR 157

Query: 161 LNLWISRPFLRCRREDIRSFLLQRN 185
           +      P     + + RS+  +R 
Sbjct: 158 M----LLPMGDITKNEARSYAAERG 178


>gi|154685782|ref|YP_001420943.1| YkvJ [Bacillus amyloliquefaciens FZB42]
 gi|154351633|gb|ABS73712.1| YkvJ [Bacillus amyloliquefaciens FZB42]
          Length = 248

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 20/96 (20%)

Query: 2  FLSPIESVRFFV--------RSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIK 52
          FL  +   R F         + +     ++V  SGG DS   LL AL +          +
Sbjct: 8  FLGRLLRKRRFFYGMIDKGEKDMKKEKAVVV-FSGGQDSTTCLLWALQNFE--------E 58

Query: 53 FSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVS 88
             ++  +  R    +E+     +  +L + + ++ 
Sbjct: 59 VETVTFHYNQRHQ--EEIDVAKSIAEKLGVKNHLLD 92


>gi|297517726|ref|ZP_06936112.1| tRNA(Ile)-lysidine synthetase [Escherichia coli OP50]
          Length = 150

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 17/120 (14%)

Query: 292 LFLKSGKRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSL 351
              +     C+  G   I R  + LW  ++V      I+       W    Q   L   L
Sbjct: 1   ALAREDASPCLRFGAFEIRRYQSQLWWIKSVAGQSETIVP------WQTWLQPLELPAGL 54

Query: 352 IQIGPQSYRKADVPSGIPPIIAQ---RALSSMPSKEGGKPL--------LAPFSRFMTKF 400
             +   +      P     +  +     L  +  + GG+ L        + P+ R  T  
Sbjct: 55  GSVQLTAGVDIRPPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPL 114


>gi|212212279|ref|YP_002303215.1| GMP synthase [Coxiella burnetii CbuG_Q212]
 gi|226738430|sp|B6IZE2|GUAA_COXB2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|212010689|gb|ACJ18070.1| GMP synthase (glutamine-hydrolyzing) [Coxiella burnetii CbuG_Q212]
          Length = 524

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 94/288 (32%), Gaps = 38/288 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++V +SGG DS      +H  + D      +   + VD   LR    DEV 
Sbjct: 221 IQEKVGKEQVIVGLSGGVDSAVTATLVHKAIGD------QLVCVLVDTGLLRLNEVDEVL 274

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTINATLIM 123
            V      L      V  K+      K  +      + A         E AK +N   + 
Sbjct: 275 NVFQ--KHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLG 332

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+   ++ + +  K          +  ++ L +  P     ++++R   L+
Sbjct: 333 QGTIYPDVIESAKTKTGKGHIIK---THHNVGGLPLNMELKLIEPLRELFKDEVRKLGLE 389

Query: 184 RNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +         D  + R         +R+   V    ++ L      F +   K +   
Sbjct: 390 LGLP-------ADLIY-RHPFPGPGLAIRILGEVNAEYINILKQADAIFIEELKKSDYYH 441

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
            +     + + ++S + +  D  +    +    ++    +      LP
Sbjct: 442 QVSQAFAVFMPLKS-VGVKGDARHYGYIIALRAVKTVDFMTAQWADLP 488


>gi|154706592|ref|YP_001424777.1| GMP synthase [Coxiella burnetii Dugway 5J108-111]
 gi|226738431|sp|A9KGD5|GUAA_COXBN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|154355878|gb|ABS77340.1| GMP synthase (glutamine-hydrolyzing) [Coxiella burnetii Dugway
           5J108-111]
          Length = 524

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 94/288 (32%), Gaps = 38/288 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++V +SGG DS      +H  + D      +   + VD   LR    DEV 
Sbjct: 221 IQEKVGKEQVIVGLSGGVDSAVTATLVHKAIGD------QLVCVLVDTGLLRLNEVDEVL 274

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTINATLIM 123
            V      L      V  K+      K  +      + A         E AK +N   + 
Sbjct: 275 NVFQ--KHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLG 332

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+   ++ + +  K          +  ++ L +  P     ++++R   L+
Sbjct: 333 QGTIYPDVIESAKTKTGKGHIIK---THHNVGGLPLNMELKLIEPLRELFKDEVRKLGLE 389

Query: 184 RNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +         D  + R         +R+   V    ++ L      F +   K +   
Sbjct: 390 LGLP-------ADLIY-RHPFPGPGLAIRILGEVNAEYINILKQADAIFIEELKKSDYYH 441

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
            +     + + ++S + +  D  +    +    ++    +      LP
Sbjct: 442 QVSQAFAVFMPLKS-VGVKGDARHYGYIIALRAVKTVDFMTAQWADLP 488


>gi|33239490|ref|NP_874432.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|44887938|sp|Q7VEH5|GUAA_PROMA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33237015|gb|AAP99084.1| GMP synthase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 528

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           V+  V    +L+A+SGG DS  L   L   +
Sbjct: 218 VQEKVGKKRVLLALSGGVDSSTLAFLLKKAI 248


>gi|45358795|ref|NP_988352.1| PP-loop domain-containing protein [Methanococcus maripaludis S2]
 gi|45047661|emb|CAF30788.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 296

 Score = 42.2 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 19/131 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLR-E 64
           + +  F    +    I+V +SGG DS   L     +        +     +   H    +
Sbjct: 26  DILNNFEELNLKDEKIIVMLSGGKDSAVSLAIAKDL-------GLNVHLCVHFVHKWSWD 78

Query: 65  TAKDEVRYVSDVCSRLRIAH-------SVVSWKNSKPQTGLMAAAREARYALISEHAKTI 117
            + +E      +  R  +          +           +    +    A + + AK  
Sbjct: 79  ISTNEA---KKLADRFNVPIIFPDITEELAKKTQGAKGKSICRICKTIMKARMMDIAKVE 135

Query: 118 NATLIMTAHTF 128
           NA +IMT  T 
Sbjct: 136 NAKIIMTGETA 146


>gi|110816248|sp|O57836|QUEC_PYRHO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
          Length = 239

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCSRL 80
          +V  SGG DS   L       + R +   +   +++++  RE +       +       L
Sbjct: 5  VVLFSGGLDSTACLY-----WAKRHYD--EVIMLTINYGSREESVMNKVAEF---FSKEL 54

Query: 81 RIAHSVVSWK 90
          +I   ++   
Sbjct: 55 KIPLKIIRVN 64


>gi|14590038|ref|NP_142102.1| hypothetical protein PH0085 [Pyrococcus horikoshii OT3]
 gi|3256471|dbj|BAA29154.1| 269aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 269

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCSRL 80
          +V  SGG DS   L       + R +   +   +++++  RE +       +       L
Sbjct: 35 VVLFSGGLDSTACLY-----WAKRHYD--EVIMLTINYGSREESVMNKVAEF---FSKEL 84

Query: 81 RIAHSVVSWK 90
          +I   ++   
Sbjct: 85 KIPLKIIRVN 94


>gi|261855227|ref|YP_003262510.1| GMP synthase [Halothiobacillus neapolitanus c2]
 gi|261835696|gb|ACX95463.1| GMP synthase, large subunit [Halothiobacillus neapolitanus c2]
          Length = 528

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 63/187 (33%), Gaps = 25/187 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +R  +    +++ +SGG DS  +   LH  + D      + + I VD+ L R    D+V 
Sbjct: 224 IRDQIGGDEVILGLSGGVDSSVVAALLHKAIGD------QLTCIFVDNGLLRLNEGDQVM 277

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQ-TGLMAAA--REARY-------ALISEHAKTI-NAT 120
             S     + +   V+           L   A   + R         +  E A    NA 
Sbjct: 278 --STFAQHMGV--RVIRVDAEARFLAALEGVADPEDKRKIIGGIFVEIFEEQANLHKNAA 333

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
            +     + D +E+      +      +        +   + L +  P     ++++R  
Sbjct: 334 WLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPAHMRLKLLEPLRELFKDEVRKI 390

Query: 181 LLQRNIS 187
            ++  + 
Sbjct: 391 GVELGLP 397


>gi|51244755|ref|YP_064639.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Desulfotalea psychrophila LSv54]
 gi|81642722|sp|Q6APU2|GUAA_DESPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|50875792|emb|CAG35632.1| probable GMP synthase [glutamine-hydrolyzing] [Desulfotalea
           psychrophila LSv54]
          Length = 516

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           IES    ++  V  AH++ A+SGG DS  +   +H  +        + + + V++ L
Sbjct: 206 IESNVAAIKEKVGDAHVICALSGGVDSSVVAAMIHKAI------GSQLTCVYVNNGL 256


>gi|2314503|gb|AAD08378.1| conserved hypothetical protein [Helicobacter pylori 26695]
          Length = 360

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 38/142 (26%), Gaps = 34/142 (23%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
             +R    +      I V +SGG DS     +L     +     +K  A           
Sbjct: 6   ARLRAITHNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA----------- 54

Query: 67  KDEVRY------VSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-E 104
             E ++          C  L I   V+ ++                        A     
Sbjct: 55  -SEKKHDLYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPL 113

Query: 105 ARYALISEHAKTINATLIMTAH 126
            ++ L  +HA  +    I T H
Sbjct: 114 MKFGLALDHALKLGCEKIATGH 135


>gi|317010016|gb|ADU80596.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori India7]
          Length = 342

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++      V 
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNVQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|300113744|ref|YP_003760319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus watsonii C-113]
 gi|299539681|gb|ADJ27998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus watsonii C-113]
          Length = 391

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 48/209 (22%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-------ISVDHCL 62
           R+  R+ V    ++V +SGG DS    + L       S   +K           +V    
Sbjct: 18  RYSPRTQVNKPKVVVGLSGGVDSSVAALRLQQQGYPISGLFMKNWVDFADESECTV---- 73

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------------- 107
               K + + V+ +   L I+    ++        +    R  RY               
Sbjct: 74  -AQDKKDAQAVTSL---LGISFHEANF-------AIEYWDRVFRYFLEEYRLGRTPNPDI 122

Query: 108 --------ALISEHAKTINATLIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTIL 158
                       +HA  +  TLI T H    DQ E    R  +   +       +     
Sbjct: 123 LCNREIKFKTFLDHALALGNTLIATGHYARIDQQEGR-YRLLKGRDKNKDQSYFLYTLGQ 181

Query: 159 YDLNLWISRPFLRCRREDIRSFLLQRNIS 187
             L+  +  P     +  +R   +Q  + 
Sbjct: 182 KQLSHTLF-PLGELEKPQVRRIAIQARLP 209


>gi|262306033|gb|ACY45609.1| gln amidotransferase [Derocheilocaris typicus]
          Length = 196

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E    ++R  V   ++L+ +SGG DS      L   L+ R     +  A+ +D+   R++
Sbjct: 31  EECLAYIRETVGNRNVLMLMSGGVDSTACAALLQKSLNQR-----QIFAVHIDNGFMRKS 85

Query: 66  AKDEVRYVSDVCSRLRIAHSVVS 88
              E + VS + +++++   VV+
Sbjct: 86  ---ESQQVSSMFAQMQLRVKVVN 105


>gi|212639795|ref|YP_002316315.1| putative PP-loop superfamily ATPase [Anoxybacillus flavithermus
          WK1]
 gi|254764299|sp|B7GLA4|QUEC_ANOFW RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|212561275|gb|ACJ34330.1| Predicted PP-loop superfamily ATPase [Anoxybacillus flavithermus
          WK1]
          Length = 221

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS   L       ++         A++ D+  R   + E+   + +   L 
Sbjct: 7  VVV-FSGGQDSTTCLFWAKKHFAE-------VEAVTFDYNQRH--RLEIDVAASIAKELN 56

Query: 82 IAHSVVS 88
          ++H+V+ 
Sbjct: 57 VSHTVLD 63


>gi|190570912|ref|YP_001975270.1| GMP synthase [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213019428|ref|ZP_03335234.1| GMP synthase [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|226739765|sp|B3CPU7|GUAA_WOLPP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|190357184|emb|CAQ54600.1| GMP synthase [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212994850|gb|EEB55492.1| GMP synthase [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 520

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
             S IE  +  +++LV    ++ AVSGG DS    +  H  +  +
Sbjct: 203 MKSFIEKQKEKIQNLVGEKKVIAAVSGGVDSSVAAVLTHKAIGKQ 247


>gi|161350046|ref|NP_894177.2| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9313]
 gi|205822220|sp|Q7TTR0|MNMA_PROMM RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 409

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 50/219 (22%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDH 60
            +      ++       + V +SGG DS      L           +       A     
Sbjct: 20  AVAKALTRLQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSGKGACC--- 76

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVS-------------WKNSKPQTGLMAAAREAR- 106
                  D +   + +C +L+I H VV               +  +     +  +R  R 
Sbjct: 77  ------SDGLIDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRS 130

Query: 107 ---YALISEHAKTINATLIMTAH-----TFDD----QLETVY-------MRSQRDYAEKG 147
                ++S   K +    + T H       +D    Q             +  R   +  
Sbjct: 131 VKFAEMLSWAKKELQLHRVATGHYARIRHREDPEPQQA---LPGDSIGRHQLLRGLDQNK 187

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
                + D +  D+   +  P     + + R    +  +
Sbjct: 188 DQSYFLYD-LSQDVLAKVIFPLGELTKAETRQEAERYGL 225


>gi|313673848|ref|YP_004051959.1| hypothetical protein Calni_1892 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940604|gb|ADR19796.1| hypothetical protein Calni_1892 [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 233

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 11/115 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +VA+SGG+DS   L      +  +    +  +   V    R     E+     +  RL +
Sbjct: 12  VVALSGGADSSFTLYLASKYIESKQIVAVTATNSHV---FR----YEINQARSIAERLNV 64

Query: 83  AHSVVSWKNSKP-QTGLMAAAREARYALISEHAK---TINATLIMTAHTFDDQLE 133
                  +                + + + E  K    +   +I      DD  E
Sbjct: 65  RWIGFEAQMDLNFFKNDENRCYYCKKSFLKEIKKIKEELGYQVIFDGSNIDDLSE 119


>gi|229102039|ref|ZP_04232752.1| hypothetical protein bcere0019_12040 [Bacillus cereus Rock3-28]
 gi|228681426|gb|EEL35590.1| hypothetical protein bcere0019_12040 [Bacillus cereus Rock3-28]
          Length = 223

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
             ++   L I H+V+ 
Sbjct: 50 CAVEIAKELGIKHTVLD 66


>gi|229114878|ref|ZP_04244291.1| hypothetical protein bcere0017_11750 [Bacillus cereus Rock1-3]
 gi|228668570|gb|EEL23999.1| hypothetical protein bcere0017_11750 [Bacillus cereus Rock1-3]
          Length = 223

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
             ++   L I H+V+ 
Sbjct: 50 CAVEIAKELGIKHTVLD 66


>gi|229189522|ref|ZP_04316538.1| hypothetical protein bcere0002_12010 [Bacillus cereus ATCC 10876]
 gi|228593967|gb|EEK51770.1| hypothetical protein bcere0002_12010 [Bacillus cereus ATCC 10876]
          Length = 223

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
             ++   L I H+V+ 
Sbjct: 50 CAVEIAKELGIKHTVLD 66


>gi|300777965|ref|ZP_07087823.1| sulfate adenylyltransferase subunit 2 [Chryseobacterium gleum ATCC
           35910]
 gi|300503475|gb|EFK34615.1| sulfate adenylyltransferase subunit 2 [Chryseobacterium gleum ATCC
           35910]
          Length = 314

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS+ L             GKI F+ + VD  H   E      + V      L + 
Sbjct: 46  FSGGKDSIVLAHLARKAFF---HGKIPFTFVHVDTGHNFPEVLDFRDQLVQQ----LDVN 98

Query: 84  HSVVSWKNSKPQTGLMAA 101
             V   +++     L  A
Sbjct: 99  LVVRKVEDTIKSKKLTEA 116


>gi|226360387|ref|YP_002778165.1| sulfate adenylyltransferase subunit 2 [Rhodococcus opacus B4]
 gi|226238872|dbj|BAH49220.1| sulfate adenylyltransferase subunit 2 [Rhodococcus opacus B4]
          Length = 317

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS  LL      +       + F+ + VD  H L+E        VS    RL +A
Sbjct: 51  FSGGKDSTVLLHL---AIKAFWPAPLPFALLHVDTGHNLQEVLDFRDHVVSKYNLRLHVA 107


>gi|65318709|ref|ZP_00391668.1| COG0603: Predicted PP-loop superfamily ATPase [Bacillus anthracis
          str. A2012]
 gi|228926470|ref|ZP_04089542.1| hypothetical protein bthur0010_11890 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
 gi|228932722|ref|ZP_04095594.1| hypothetical protein bthur0009_11980 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228945038|ref|ZP_04107399.1| hypothetical protein bthur0007_12040 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|229120979|ref|ZP_04250221.1| hypothetical protein bcere0016_12880 [Bacillus cereus 95/8201]
 gi|229183633|ref|ZP_04310856.1| hypothetical protein bcere0004_12050 [Bacillus cereus BGSC 6E1]
 gi|228599876|gb|EEK57473.1| hypothetical protein bcere0004_12050 [Bacillus cereus BGSC 6E1]
 gi|228662639|gb|EEL18237.1| hypothetical protein bcere0016_12880 [Bacillus cereus 95/8201]
 gi|228814707|gb|EEM60967.1| hypothetical protein bthur0007_12040 [Bacillus thuringiensis
          serovar monterrey BGSC 4AJ1]
 gi|228826927|gb|EEM72689.1| hypothetical protein bthur0009_11980 [Bacillus thuringiensis
          serovar andalousiensis BGSC 4AW1]
 gi|228833294|gb|EEM78859.1| hypothetical protein bthur0010_11890 [Bacillus thuringiensis
          serovar pondicheriensis BGSC 4BA1]
          Length = 223

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
             ++   L I H+V+ 
Sbjct: 50 CAVEIAKELGIKHTVLD 66


>gi|304408668|ref|ZP_07390289.1| exsB protein [Shewanella baltica OS183]
 gi|307305497|ref|ZP_07585245.1| exsB protein [Shewanella baltica BA175]
 gi|304352489|gb|EFM16886.1| exsB protein [Shewanella baltica OS183]
 gi|306911800|gb|EFN42225.1| exsB protein [Shewanella baltica BA175]
          Length = 249

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 45/191 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +   I+ D+  R   ++E+     +  RL
Sbjct: 24  VVV-FSGGQDSTTCLIQALTQYD--------EVHGITFDYGQRH--REEIEVAKSLAKRL 72

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA-------------------R----YALISEHAKTI 117
           +I    V       +  + A  R+A                   R      L   +A  +
Sbjct: 73  KITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVPGRNILFLTLAGIYAYQL 132

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  I+T        ET +      R+   K M  + +      D  L I  P +   + 
Sbjct: 133 GAEAIITG-----VCETDFSGYPDCRNDFVKAMESALVQGM---DKQLKIITPLMWLNKA 184

Query: 176 DIRSFLLQRNI 186
              +   +   
Sbjct: 185 QTWALADKYQQ 195


>gi|189029590|sp|A1RJY8|QUEC_SHESW RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|189029599|sp|A4Y6J4|QUEC_SHEPC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
          Length = 240

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 45/191 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +   I+ D+  R   ++E+     +  RL
Sbjct: 15  VVV-FSGGQDSTTCLIQALTQYD--------EVHGITFDYGQRH--REEIEVAKSLAKRL 63

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA-------------------R----YALISEHAKTI 117
           +I    V       +  + A  R+A                   R      L   +A  +
Sbjct: 64  KITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVPGRNILFLTLAGIYAYQL 123

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  I+T        ET +      R+   K M  + +      D  L I  P +   + 
Sbjct: 124 GAEAIITG-----VCETDFSGYPDCRNDFVKAMESALVQGM---DKQLKIITPLMWLNKA 175

Query: 176 DIRSFLLQRNI 186
              +   +   
Sbjct: 176 QTWALADKYQQ 186


>gi|153000639|ref|YP_001366320.1| queuosine biosynthesis protein QueC [Shewanella baltica OS185]
 gi|189029311|sp|A6WN68|QUEC_SHEB8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|151365257|gb|ABS08257.1| exsB protein [Shewanella baltica OS185]
          Length = 240

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 45/191 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +   I+ D+  R   ++E+     +  RL
Sbjct: 15  VVV-FSGGQDSTTCLIQALTQYD--------EVHGITFDYGQRH--REEIEVAKSLAKRL 63

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA-------------------R----YALISEHAKTI 117
           +I    V       +  + A  R+A                   R      L   +A  +
Sbjct: 64  KITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVPGRNILFLTLAGIYAYQL 123

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  I+T        ET +      R+   K M  + +      D  L I  P +   + 
Sbjct: 124 GAEAIITG-----VCETDFSGYPDCRNDFVKAMESALVQGM---DKQLKIITPLMWLNKA 175

Query: 176 DIRSFLLQRNI 186
              +   +   
Sbjct: 176 QTWALADKYQQ 186


>gi|120598963|ref|YP_963537.1| queuosine biosynthesis protein QueC [Shewanella sp. W3-18-1]
 gi|146292952|ref|YP_001183376.1| queuosine biosynthesis protein QueC [Shewanella putrefaciens CN-32]
 gi|120559056|gb|ABM24983.1| exsB protein [Shewanella sp. W3-18-1]
 gi|145564642|gb|ABP75577.1| exsB protein [Shewanella putrefaciens CN-32]
 gi|319426519|gb|ADV54593.1| exsB protein [Shewanella putrefaciens 200]
          Length = 245

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 45/191 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +   I+ D+  R   ++E+     +  RL
Sbjct: 20  VVV-FSGGQDSTTCLIQALTQYD--------EVHGITFDYGQRH--REEIEVAKSLAKRL 68

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA-------------------R----YALISEHAKTI 117
           +I    V       +  + A  R+A                   R      L   +A  +
Sbjct: 69  KITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVPGRNILFLTLAGIYAYQL 128

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  I+T        ET +      R+   K M  + +      D  L I  P +   + 
Sbjct: 129 GAEAIITG-----VCETDFSGYPDCRNDFVKAMESALVQGM---DKQLKIITPLMWLNKA 180

Query: 176 DIRSFLLQRNI 186
              +   +   
Sbjct: 181 QTWALADKYQQ 191


>gi|126090178|ref|YP_001041659.1| queuosine biosynthesis protein QueC [Shewanella baltica OS155]
 gi|126174471|ref|YP_001050620.1| queuosine biosynthesis protein QueC [Shewanella baltica OS155]
 gi|217973440|ref|YP_002358191.1| queuosine biosynthesis protein QueC [Shewanella baltica OS223]
 gi|254764383|sp|B8E544|QUEC_SHEB2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|125997676|gb|ABN61751.1| exsB protein [Shewanella baltica OS155]
 gi|125999834|gb|ABN63904.1| hypothetical protein Sbal_4541 [Shewanella baltica OS155]
 gi|217498575|gb|ACK46768.1| exsB protein [Shewanella baltica OS223]
          Length = 240

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 60/191 (31%), Gaps = 45/191 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +   I+ D+  R   ++E+     +  RL
Sbjct: 15  VVV-FSGGQDSTTCLIQALTQYD--------EVHGITFDYGQRH--REEIEVAKSLAKRL 63

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA-------------------R----YALISEHAKTI 117
           +I    V       +  + A  R+A                   R      L   +A  +
Sbjct: 64  KITSHKVMDVTLLNELAISALTRDAIPVSHELMENGLPNTFVPGRNILFLTLAGIYAYQL 123

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  I+T        ET +      R+   K M  + +      D  L I  P +   + 
Sbjct: 124 GAEAIITG-----VCETDFSGYPDCRNDFVKAMESALVQGM---DKQLKIITPLMWLNKA 175

Query: 176 DIRSFLLQRNI 186
              +   +   
Sbjct: 176 QTWALADKYQQ 186


>gi|325973163|ref|YP_004250227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Mycoplasma suis str. Illinois]
 gi|323651765|gb|ADX97847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Mycoplasma suis str. Illinois]
          Length = 369

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 18/81 (22%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRE-------TA-KD 68
            +++A+SGG DS    + L            K   I +   D  L E        +   
Sbjct: 7  KKVVIALSGGVDSSVAALLLKK-------EGYKVFGIHMINWDSQLNELEMDKECESLSK 59

Query: 69 EVRYVSDVCSRLRIAHSVVSW 89
          +  Y   +  +L I   V ++
Sbjct: 60 DREYAELIAQQLEIPFYVYNF 80


>gi|288919727|ref|ZP_06414054.1| GMP synthase, small subunit [Frankia sp. EUN1f]
 gi|288348916|gb|EFC83166.1| GMP synthase, small subunit [Frankia sp. EUN1f]
          Length = 290

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
            L+ ++     VR  V    ++  +SGG DS     A+ + L  R+ G    + + VDH 
Sbjct: 213 MLNIVDEAVAAVRKQVGGGRLICGLSGGVDS-----AVAAALVQRAVGD-ALTCVFVDHG 266

Query: 62  L 62
           L
Sbjct: 267 L 267


>gi|205814822|sp|B2S125|MNMA_BORHD RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 354

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 68/197 (34%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   +     +     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWL--------EDELSYIGECPWEEDI 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA--------------RYALISEHAK- 115
            YV  VC++  + + ++S ++   +  +  A  E               R    +   K 
Sbjct: 54  NYVEAVCTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKI 113

Query: 116 TINATLIMTAHTFDDQLET-----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             +  LI+T H    ++E      +  +++    ++   LS +    +  L+     P  
Sbjct: 114 NEHYDLIVTGHYA--KIENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHF----PLG 167

Query: 171 RCRREDIRSFLLQRNIS 187
              + +IR    + ++ 
Sbjct: 168 DLLKTEIRQIAHKIDLP 184


>gi|187918538|ref|YP_001884101.1| tRNA-specific 2-thiouridylase MnmA [Borrelia hermsii DAH]
 gi|119861386|gb|AAX17181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia hermsii DAH]
          Length = 357

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 68/197 (34%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   +     +     +K           E           ++++
Sbjct: 5   KIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWL--------EDELSYIGECPWEEDI 56

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA--------------RYALISEHAK- 115
            YV  VC++  + + ++S ++   +  +  A  E               R    +   K 
Sbjct: 57  NYVEAVCTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKI 116

Query: 116 TINATLIMTAHTFDDQLET-----VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             +  LI+T H    ++E      +  +++    ++   LS +    +  L+     P  
Sbjct: 117 NEHYDLIVTGHYA--KIENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHF----PLG 170

Query: 171 RCRREDIRSFLLQRNIS 187
              + +IR    + ++ 
Sbjct: 171 DLLKTEIRQIAHKIDLP 187


>gi|152968979|ref|YP_001334088.1| queuosine biosynthesis protein QueC [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|262042480|ref|ZP_06015639.1| transcription regulator ExsB [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|167016431|sp|A6T5I7|QUEC_KLEP7 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|150953828|gb|ABR75858.1| putative (aluminum) resistance protein [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|259040184|gb|EEW41296.1| transcription regulator ExsB [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 233

 Score = 42.2 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 R-IAHSVVSW 89
            +AH V+  
Sbjct: 54 GAVAHKVLDV 63


>gi|296101567|ref|YP_003611713.1| queuosine biosynthesis protein QueC [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|295056026|gb|ADF60764.1| queuosine biosynthesis protein QueC [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
          Length = 231

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ ALH           +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALHQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|291286025|ref|YP_003502841.1| GMP synthase, large subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290883185|gb|ADD66885.1| GMP synthase, large subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 515

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 26/197 (13%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
            + +E+    ++ LV    +L  +SGG DS    + +H  + D        + + VD+  
Sbjct: 202 RNFVEAEIERIKELVGDKRVLCGLSGGVDSSVAAVLIHRAIGD------NLTCVFVDNGL 255

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAREARYALISEHAK 115
           LR   KDE + V D   R +   ++V+         ++         R+A   +     +
Sbjct: 256 LR---KDEGKQVED-AFRNQFKMNLVAVNAEDRFLSVLKGVTDPEKKRKAIGNMFVRIFE 311

Query: 116 TIN-----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
             +        +     + D +E+V  +      +    + G+ +    D+   +  P  
Sbjct: 312 EESSKLGEFEFLAQGTLYPDVIESVSFKGPSATIKTHHNVGGLPE----DMKFKLLEPLR 367

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   L+  I 
Sbjct: 368 ELFKDEVRRVGLELGIP 384


>gi|168001078|ref|XP_001753242.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695528|gb|EDQ81871.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 542

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 13/89 (14%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++    ++    H++ A+SGG DS      +H  + DR         + VD+ L    
Sbjct: 223 EEIKKVTATVGPDDHVICALSGGVDSTVAATLVHRAIGDR------LHCVFVDNGLCRYK 276

Query: 67  KDE---VRYVSDVCSRLRIAHSVVSWKNS 92
           + E     +V D    L +  + V     
Sbjct: 277 ERERVMATFVKD----LHLPVTCVDATEQ 301


>gi|150005368|ref|YP_001300112.1| putative sulfate adenylate transferase, subunit 2 [Bacteroides
           vulgatus ATCC 8482]
 gi|149933792|gb|ABR40490.1| putative sulfate adenylate transferase, subunit 2 [Bacteroides
           vulgatus ATCC 8482]
          Length = 289

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I+V+ SGG DS   L     + + + +G  K  A+  D        D  ++++DVC ++
Sbjct: 2   KIIVSFSGGKDSQACL-----IQAAKQYGADKIEAVFCDTGW--EHPDTYQHITDVCKQM 54

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARY 107
            +  + +     KP+   +   ++ R 
Sbjct: 55  GVRITTL-----KPEFNFIEICKKYRR 76


>gi|320529147|ref|ZP_08030239.1| GMP synthase protein [Selenomonas artemidis F0399]
 gi|320138777|gb|EFW30667.1| GMP synthase protein [Selenomonas artemidis F0399]
          Length = 519

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +     L A+SGG DS    + L   +          + + VD   LR+   DEV 
Sbjct: 215 LRKKIGGGRALCALSGGVDSSVAAVLLSKAIGK------NLTCVFVDQGLLRKNEGDEVE 268

Query: 72  YVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTIN-ATL 121
            V        +    ++ +          ++P+        E    +  E A  I     
Sbjct: 269 AVFGSAGTYDVNFIRINAQERFYEKLKGVTEPEQKRKIIGAEF-IRVFEEAAHEIGTVDF 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+     +    +    + G+ D + +     I  P     ++++R+  
Sbjct: 328 LVQGTIYPDVIESGL--GKSAVIKSHHNVGGLPDHVDFK---EIVEPLRLLFKDEVRAAG 382

Query: 182 LQRNIS 187
            +  I 
Sbjct: 383 RELGIP 388


>gi|223043070|ref|ZP_03613118.1| ExsB protein [Staphylococcus capitis SK14]
 gi|222443924|gb|EEE50021.1| ExsB protein [Staphylococcus capitis SK14]
          Length = 223

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     I+V  SGG DS   L  A       + F +++   ++ ++  R     E+    
Sbjct: 6  LDKDKAIVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DTEIEVAK 54

Query: 75 DVCSRLRIAHSVVS 88
           + +   + H ++ 
Sbjct: 55 KIANEQNLKHHILD 68


>gi|254526370|ref|ZP_05138422.1| GMP synthase [Prochlorococcus marinus str. MIT 9202]
 gi|221537794|gb|EEE40247.1| GMP synthase [Prochlorococcus marinus str. MIT 9202]
          Length = 528

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           IE     +R  V    +L+A+SGG DS  L   L+  +
Sbjct: 211 IEETIPRIREQVGNKKVLLALSGGVDSSTLAFLLNKAI 248


>gi|157412374|ref|YP_001483240.1| GMP synthase [Prochlorococcus marinus str. MIT 9215]
 gi|226739661|sp|A8G223|GUAA_PROM2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|157386949|gb|ABV49654.1| GMP synthase, PP-ATPase domain/subunit [Prochlorococcus marinus
           str. MIT 9215]
          Length = 528

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           IE     +R  V    +L+A+SGG DS  L   L+  +
Sbjct: 211 IEETIPRIREQVGNKKVLLALSGGVDSSTLAFLLNKAI 248


>gi|126695374|ref|YP_001090260.1| GMP synthase [Prochlorococcus marinus str. MIT 9301]
 gi|226739659|sp|A3PA84|GUAA_PROM0 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|126542417|gb|ABO16659.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 528

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           IE     +R  V    +L+A+SGG DS  L   L+  +
Sbjct: 211 IEETIPRIREQVGNKKVLLALSGGVDSSTLAFLLNKAI 248


>gi|123967573|ref|YP_001008431.1| GMP synthase [Prochlorococcus marinus str. AS9601]
 gi|226739665|sp|A2BNG3|GUAA_PROMS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123197683|gb|ABM69324.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. AS9601]
          Length = 528

 Score = 42.2 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           IE     +R  V    +L+A+SGG DS  L   L+  +
Sbjct: 211 IEETIPRIREQVGNKKVLLALSGGVDSSTLAFLLNKAI 248


>gi|306835323|ref|ZP_07468349.1| GMP synthase [Corynebacterium accolens ATCC 49726]
 gi|304568802|gb|EFM44341.1| GMP synthase [Corynebacterium accolens ATCC 49726]
          Length = 524

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 16/175 (9%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKD--EVRYVSDVCSR 79
           +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   ++  E  +V+   ++
Sbjct: 224 ICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGEREQVETDFVASTGAK 277

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM---TAHTFDDQLE-TV 135
           L  A    ++             R+A  A      +   A ++       T D  ++ T+
Sbjct: 278 LVTADERSAFLKKLAGVSDPEEKRKAIGAEFIRSFERAVAGVLADAPAGSTVDYLVQGTL 337

Query: 136 YMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           Y          G            +  D+   +  P     ++++R+   +  + 
Sbjct: 338 YPDVVESGGGDGTANIKSHHNVGGLPDDVEFELVEPLRLLFKDEVRAVGRELGLP 392


>gi|295675544|ref|YP_003604068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1002]
 gi|295435387|gb|ADG14557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. CCGE1002]
          Length = 420

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 53/203 (26%), Gaps = 49/203 (24%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---S 74
               ++V +SGG DS      L     D     +K               D+  Y     
Sbjct: 2   SKRKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 75  DV------CSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
           D          + I    V++                 A R          E ++    +
Sbjct: 52  DWIDVVSVADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAH-------TFDD-QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW 164
           HA ++ A  I T H          D + E   +++     ++   L  +    L      
Sbjct: 112 HAMSLGAETIATGHYARVRQNHERDGRFE--LLKALDHTKDQSYFLHRLNQAQLSKT--- 166

Query: 165 ISRPFLRCRREDIRSFLLQRNIS 187
              P     +  +R    Q  + 
Sbjct: 167 -LFPLGEIPKTKVREIAAQIGLP 188


>gi|192360356|ref|YP_001982568.1| GMP synthase [Cellvibrio japonicus Ueda107]
 gi|226738415|sp|B3PIG3|GUAA_CELJU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|190686521|gb|ACE84199.1| GMP synthase, C- domain protein [Cellvibrio japonicus Ueda107]
          Length = 525

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  V    +L+ +SGG DS  +   LH  + D      + + + VD+  LR+   D   
Sbjct: 221 VREQVGTDKVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGLLRKNEGD--- 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAA---REARY-------ALISEHAKTIN-A 119
            V D     + +   V+     +   G +A      + R         +    A  +   
Sbjct: 272 QVMDMFAKNMGV--RVIRADAEQLFLGKLAGVSDPEKKRKIIGGTFIDVFDTEATKLQEV 329

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+    + +      +        +  D+   +  P     ++++R+
Sbjct: 330 KWLAQGTIYPDVIES---AAAKTGKAHVIKSHHNVGGLPEDMAFKLVEPLRELFKDEVRA 386

Query: 180 FLLQRNISW 188
             L+  + +
Sbjct: 387 IGLELGLPY 395


>gi|183981170|ref|YP_001849461.1| GMP synthase, GuaA [Mycobacterium marinum M]
 gi|226739643|sp|B2HDP0|GUAA_MYCMM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|183174496|gb|ACC39606.1| GMP synthase, GuaA [Mycobacterium marinum M]
          Length = 525

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 70/186 (37%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +   H +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   + +V 
Sbjct: 219 VRTQIGDGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGERAQVE 272

Query: 72  --YVSDVCSRL---RIAHSVVSWK--NSKPQTGLMAAAREARYAL---ISEHAKTINATL 121
             +V+   + L    +A + ++     + P+       R+   A    + +     +   
Sbjct: 273 RDFVAATKANLVTVDVADTFLAALSGVTDPEGKRKIIGRQFIRAFEGAVRDVLDGRDIEF 332

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           ++    + D +E+             +        +  DL   +  P     ++++R+  
Sbjct: 333 LVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDLKFALVEPLRLLFKDEVRAVG 387

Query: 182 LQRNIS 187
            +  + 
Sbjct: 388 RELGLP 393


>gi|225848894|ref|YP_002729058.1| GMP synthase [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643531|gb|ACN98581.1| GMP synthase [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 511

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V     + A+SGG DS    + +H+ + D        + I VD+  LR+  +++V 
Sbjct: 208 IRQTVGNKKAICALSGGVDSSVAAVLVHNAIGD------NLTCIFVDNGLLRKGEREQVE 261

Query: 72  YVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATLI 122
                     I   VV     + N+          R+    L  E  +       +   +
Sbjct: 262 --KTFRDNFHIPLIVVDARERFLNALKGITDPEQKRKIIGNLFIEVFEEEAKKLKDVEFL 319

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +    + D +E+V ++      +    + G+ +     +NL +  P     ++++R    
Sbjct: 320 VQGTLYPDVIESVSVKGPSAVIKTHHNVGGLPE----RMNLKLIEPLRELFKDEVRELGK 375

Query: 183 QRNIS 187
           +  + 
Sbjct: 376 ELGLP 380


>gi|149246648|ref|XP_001527749.1| hypothetical protein LELG_00269 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|226711447|sp|A5DSD3|CTU2_LODEL RecName: Full=Cytoplasmic tRNA 2-thiolation protein 2
 gi|146447703|gb|EDK42091.1| hypothetical protein LELG_00269 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 448

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISV 58
            +L+A SGG  S+ LL  L  +L +     R     +    ++
Sbjct: 67  KVLLAFSGGVSSLVLLDVLARLLEEQKNTHRDLQGFELVVANI 109


>gi|113954939|ref|YP_729285.1| GMP synthase [Synechococcus sp. CC9311]
 gi|123031950|sp|Q0IE37|GUAA_SYNS3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|113882290|gb|ABI47248.1| GMP synthase, glutamine-hydrolyzing [Synechococcus sp. CC9311]
          Length = 528

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           VR  V    +L+A+SGG DS  L   L   + D+
Sbjct: 218 VRDQVGQKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|193213507|ref|YP_001999460.1| GMP synthase [Chlorobaculum parvum NCIB 8327]
 gi|193086984|gb|ACF12260.1| GMP synthase, large subunit [Chlorobaculum parvum NCIB 8327]
          Length = 516

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 68/186 (36%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++ +   + ++  +SGG DS    + +   + D+         + VD+  LR   KDE  
Sbjct: 217 IKRVAGDSTVVCGISGGVDSTVAAVLVSKAIGDK------LHCVFVDNGLLR---KDEAT 267

Query: 72  YVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            V +    L +  ++    +      K         +      I    + I+    +   
Sbjct: 268 KVMEFLKPLGLKVTLADASDLFLGRLKGVASPEKKRKIIGRTFIRVFEENIHDEKFLVQG 327

Query: 127 TF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           T   D +E+V ++   +  +    + G+       + L +  P     ++++R+   +  
Sbjct: 328 TLYPDVIESVSVKGPSETIKSHHNVGGL----PKRMKLKLIEPLRELFKDEVRAVGRELG 383

Query: 186 ISWCED 191
           I+  ED
Sbjct: 384 IA--ED 387


>gi|170697658|ref|ZP_02888746.1| sulfate adenylyltransferase, small subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171316733|ref|ZP_02905945.1| sulfate adenylyltransferase, small subunit [Burkholderia ambifaria
           MEX-5]
 gi|170137406|gb|EDT05646.1| sulfate adenylyltransferase, small subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171098083|gb|EDT42898.1| sulfate adenylyltransferase, small subunit [Burkholderia ambifaria
           MEX-5]
          Length = 320

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L        L       + F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLHLALKAFGLGANRKTTLPFPLVHIDTGHNYEEVIDFRDRRAQELGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K           +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVVLRRETDSRNAAQAVTLLETIEQHGYTALIGGARRD 156


>gi|28393249|gb|AAO42053.1| putative GMP synthase [Arabidopsis thaliana]
          Length = 534

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++   +++    H++ A+SGG DS      +H  + DR         I VD+  LR  
Sbjct: 215 EEIKVINKTVASDEHVICALSGGVDSTVAATLVHKAIGDR------LHCIFVDNGLLR-- 266

Query: 66  AKDEVRYVSDVCSR-LRIAHSVVS 88
              E   V D   R L +  + V 
Sbjct: 267 -YKEQERVMDTFERDLHLPVTCVD 289


>gi|78778422|ref|YP_396534.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prochlorococcus marinus str. MIT 9312]
 gi|91206817|sp|Q31DE7|GUAA_PROM9 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78711921|gb|ABB49098.1| GMP synthase (glutamine-hydrolyzing) [Prochlorococcus marinus str.
           MIT 9312]
          Length = 528

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL 43
           IE     +R  V    +L+A+SGG DS  L   L+  +
Sbjct: 211 IEETIPRIRDQVGNKKVLLALSGGVDSSTLAFLLNKAI 248


>gi|42571981|ref|NP_974081.1| GMP synthase (glutamine-hydrolyzing), putative / glutamine
           amidotransferase, putative [Arabidopsis thaliana]
 gi|332196007|gb|AEE34128.1| GMP-synthase-C and glutamine amidotransferase domain-containing
           protein [Arabidopsis thaliana]
          Length = 434

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++   +++    H++ A+SGG DS      +H  + DR         I VD+  LR  
Sbjct: 215 EEIKVINKTVASDEHVICALSGGVDSTVAATLVHKAIGDR------LHCIFVDNGLLR-- 266

Query: 66  AKDEVRYVSDVCSR-LRIAHSVVS 88
              E   V D   R L +  + V 
Sbjct: 267 -YKEQERVMDTFERDLHLPVTCVD 289


>gi|15222505|ref|NP_176553.1| GMP synthase (glutamine-hydrolyzing), putative / glutamine
           amidotransferase, putative [Arabidopsis thaliana]
 gi|12324937|gb|AAG52416.1|AC011622_4 GMP synthase; 61700-64653 [Arabidopsis thaliana]
 gi|56381989|gb|AAV85713.1| At1g63660 [Arabidopsis thaliana]
 gi|332196006|gb|AEE34127.1| GMP-synthase-C and glutamine amidotransferase domain-containing
           protein [Arabidopsis thaliana]
          Length = 534

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++   +++    H++ A+SGG DS      +H  + DR         I VD+  LR  
Sbjct: 215 EEIKVINKTVASDEHVICALSGGVDSTVAATLVHKAIGDR------LHCIFVDNGLLR-- 266

Query: 66  AKDEVRYVSDVCSR-LRIAHSVVS 88
              E   V D   R L +  + V 
Sbjct: 267 -YKEQERVMDTFERDLHLPVTCVD 289


>gi|330837271|ref|YP_004411912.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta coccoides DSM
           17374]
 gi|329749174|gb|AEC02530.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta coccoides DSM
           17374]
          Length = 520

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 71/195 (36%), Gaps = 23/195 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHCL 62
           S I +    +RS+V    +L  +SGG DS    + +H  + D      +   + V +  L
Sbjct: 207 SFIATEVERIRSVVGDRKVLCGLSGGVDSSVAAVLIHKAIGD------QLVCVFVNNGML 260

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL--------ISEH 113
           R+    E + V D+      +    V  + +        A  EA+  +          + 
Sbjct: 261 RKN---EAQNVVDLFGKHFNMRLEYVDAETAFLDALKGIAEPEAKRKIIGKMFVDVFYDA 317

Query: 114 AKTIN-ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           A+++   + +     + D +E+   RS        +        +  DL   +  P    
Sbjct: 318 ARSLGDISFLAQGTLYPDVIES---RSPSGGPSATIKSHHNVGGLPDDLKWELLEPLKEL 374

Query: 173 RREDIRSFLLQRNIS 187
            ++++R   ++  ++
Sbjct: 375 FKDEVRQLGMELGLA 389


>gi|291547860|emb|CBL20968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Ruminococcus sp. SR1/5]
          Length = 362

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 59/194 (30%), Gaps = 36/194 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-----VLSDRSFGKIKFSAISVDHCLRET---AKDEVR 71
             +++A+SGG DS    +         + +       +   +      RE    + D+V 
Sbjct: 2   KKVIIAMSGGVDSSVAALLTKESGDECIGATMKLYNNEDIGVH-----REKTCCSLDDVE 56

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQT-------GLMAAA---------REARYALISEHAK 115
               V  ++ + + V ++                             R  ++  +    +
Sbjct: 57  DARSVAYQMDMPYYVFNFTADFHTEVMDRFVDAYENGCTPNPCIDCNRYLKFDKMFHRMQ 116

Query: 116 TINATLIMTAHTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
            I    I+T H      D++ +   ++   D  +    +  M   +  +    +  P   
Sbjct: 117 EIGYDYIVTGHYARVEYDEKRDRYLLKKAVDDTKDQSYVLYM---LTQEQLAHVKLPLGG 173

Query: 172 CRREDIRSFLLQRN 185
            R++ +R    +  
Sbjct: 174 LRKDQVRVIAEKHG 187


>gi|260495481|ref|ZP_05815607.1| GMP synthase domain-containing protein [Fusobacterium sp. 3_1_33]
 gi|260197018|gb|EEW94539.1| GMP synthase domain-containing protein [Fusobacterium sp. 3_1_33]
          Length = 512

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 33/202 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE+    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IETTVKKIKERVGNKKVILGLSGGVDSSVAAALINKAIGK------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +V ++   + I       +        + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFDMNIKCINAEERFLTKLAGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFL 170
           K   A  +     + D +E+V        + KG  +          +  DL   +  P  
Sbjct: 313 KIEGAEFLAQGTIYPDVIESV--------SVKGPSVTIKSHHNVGGLPKDLKFELLEPLR 364

Query: 171 RCRREDIRSFLLQRNIS-WCED 191
              ++++R    +  I  +  D
Sbjct: 365 ELFKDEVRKVGRELGIPDYMID 386


>gi|284036611|ref|YP_003386541.1| sulfate adenylyltransferase small subunit [Spirosoma linguale DSM
           74]
 gi|283815904|gb|ADB37742.1| sulfate adenylyltransferase, small subunit [Spirosoma linguale DSM
           74]
          Length = 300

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS+ L+      L     GK  F  + +D  H  +E           +  +L + 
Sbjct: 31  FSGGKDSITLVHL---ALKAFRPGKFPFPLVHIDTGHNFQEALDYRDAMAERIGEKLIVR 87

Query: 84  HSVVSWKNSKPQTGLMAAAREA 105
           +   + +  K +       R A
Sbjct: 88  YVEDTIREKKLK---EPTGRNA 106


>gi|289582370|ref|YP_003480836.1| GMP synthase, large subunit [Natrialba magadii ATCC 43099]
 gi|289531923|gb|ADD06274.1| GMP synthase, large subunit [Natrialba magadii ATCC 43099]
          Length = 305

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 30/175 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLR 81
           ++A+SGG DS       +  + D      + + + VD  L R+   D++R   D    L+
Sbjct: 25  VIALSGGVDSSVAAALAYESIGD------QLTPVYVDTGLMRKGETDQIRETFDYMDSLQ 78

Query: 82  I---------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           I         A   V     K +       RE         A   +A  ++    + D++
Sbjct: 79  IVDAKDRFLDALEGVIDPEEKRKIIGEQFIRE-----FEREATEADADYLVQGTIYPDRI 133

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           E           +    + G+ D + +D    I  P     ++++R      ++ 
Sbjct: 134 E------SEGGIKSHHNVGGLPDVVDFDG---IVEPVRDLYKDEVREVARHLDLD 179


>gi|172061431|ref|YP_001809083.1| sulfate adenylyltransferase subunit 2 [Burkholderia ambifaria
           MC40-6]
 gi|171993948|gb|ACB64867.1| sulfate adenylyltransferase, small subunit [Burkholderia ambifaria
           MC40-6]
          Length = 320

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L        L       + F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLHLALKAFGLGANRKTTLPFPLVHIDTGHNYEEVIDFRDRRAQELGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K           +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVVLRRETDSRNAAQAVTLLETIEQHGYTALIGGARRD 156


>gi|87201149|ref|YP_498406.1| ExsB [Novosphingobium aromaticivorans DSM 12444]
 gi|110816238|sp|Q2G3K1|QUEC_NOVAD RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|87136830|gb|ABD27572.1| preQ(0) biosynthesis protein QueC [Novosphingobium
          aromaticivorans DSM 12444]
          Length = 233

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V +SGG DSM        +  ++ F   +  A+++D+  R   + E+     + +RL +
Sbjct: 14 VVLLSGGLDSMV----CAGLAQEQGF---RVLALTIDYNQRH--RVELDAARAIAARLGV 64

Query: 83 AHSVV 87
             V+
Sbjct: 65 ERHVI 69


>gi|295703391|ref|YP_003596466.1| queuosine biosynthesis protein QueC [Bacillus megaterium DSM 319]
 gi|294801050|gb|ADF38116.1| queuosine biosynthesis protein QueC [Bacillus megaterium DSM 319]
          Length = 221

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   L  AL +          +   ++  +  R +   E+     + + L
Sbjct: 8  IVV-FSGGQDSTTCLFWALKNFK--------EVETVTFQYGQRHS--QEIEVAKAIAADL 56

Query: 81 RIAHSVVS 88
           + H+V+ 
Sbjct: 57 GVKHTVLD 64


>gi|294498041|ref|YP_003561741.1| queuosine biosynthesis protein QueC [Bacillus megaterium QM
          B1551]
 gi|294347978|gb|ADE68307.1| queuosine biosynthesis protein QueC [Bacillus megaterium QM
          B1551]
          Length = 220

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   L  AL +          +   ++  +  R +   E+     + + L
Sbjct: 7  IVV-FSGGQDSTTCLFWALKNFK--------EVETVTFQYGQRHS--QEIEVAKAIAADL 55

Query: 81 RIAHSVVS 88
           + H+V+ 
Sbjct: 56 GVKHTVLD 63


>gi|297618698|ref|YP_003706803.1| cell cycle control-like ATPase [Methanococcus voltae A3]
 gi|297377675|gb|ADI35830.1| ATPase of the PP-loop superfamily protein implicated in cell cycle
           control-like protein [Methanococcus voltae A3]
          Length = 367

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 29/181 (16%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS-AISVDHCLR-ETAKDEVRYVSDVCSRL 80
           L+ +SGG DS   L     +        I     I   H    + +K+E     ++  + 
Sbjct: 63  LLMLSGGKDSATALALCKEL-------NINVVLCIHYVHNWSWDISKNEAD---NLAKKY 112

Query: 81  RIAHSVVSWKNS-------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLE 133
            +                      +    ++       E+AK     +I+T  T    LE
Sbjct: 113 DVPIIFPDITEKLSKKIKGAKGKSICRICKDIMKLRAVEYAKENGFDIIITGDTA---LE 169

Query: 134 TV---YMRSQRDYAEKG----MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            +    +   R+   K              I    + +  RP LR  + D+ +      I
Sbjct: 170 KISGPILDDLREKNPKLEDKDFYHKMELSKIPRRYDTYFLRPLLRLSQNDVMAIHEHYGI 229

Query: 187 S 187
           +
Sbjct: 230 N 230


>gi|115352572|ref|YP_774411.1| sulfate adenylyltransferase subunit 2 [Burkholderia ambifaria AMMD]
 gi|115282560|gb|ABI88077.1| sulfate adenylyltransferase subunit 2 [Burkholderia ambifaria AMMD]
          Length = 320

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L        L       + F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLHLALKAFGLGANRKTTLPFPLVHIDTGHNYEEVIDFRDRRAQELGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K           +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVVLRRETDSRNAAQAVTLLETIEQHGYTALIGGARRD 156


>gi|107023410|ref|YP_621737.1| sulfate adenylyltransferase subunit 2 [Burkholderia cenocepacia AU
           1054]
 gi|116690492|ref|YP_836115.1| sulfate adenylyltransferase subunit 2 [Burkholderia cenocepacia
           HI2424]
 gi|170733813|ref|YP_001765760.1| sulfate adenylyltransferase subunit 2 [Burkholderia cenocepacia
           MC0-3]
 gi|206561020|ref|YP_002231785.1| sulfate adenylyltransferase subunit 2 [Burkholderia cenocepacia
           J2315]
 gi|254247466|ref|ZP_04940787.1| Sulfate adenylyltransferase [Burkholderia cenocepacia PC184]
 gi|105893599|gb|ABF76764.1| sulfate adenylyltransferase subunit 2 [Burkholderia cenocepacia AU
           1054]
 gi|116648581|gb|ABK09222.1| sulfate adenylyltransferase subunit 2 [Burkholderia cenocepacia
           HI2424]
 gi|124872242|gb|EAY63958.1| Sulfate adenylyltransferase [Burkholderia cenocepacia PC184]
 gi|169817055|gb|ACA91638.1| sulfate adenylyltransferase, small subunit [Burkholderia
           cenocepacia MC0-3]
 gi|198037062|emb|CAR52983.1| putative sulfate adenylyltransferase subunit 2 1 [Burkholderia
           cenocepacia J2315]
          Length = 320

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L        L       + F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLHLALKAFGLGANRKTTLPFPLVHIDTGHNYEEVIDFRDRRAQELGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K           +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVVLRRETDSRNAAQAVTLLETIEQHGYTALIGGARRD 156


>gi|321315127|ref|YP_004207414.1| pre-queuosine 0 synthase [Bacillus subtilis BSn5]
 gi|320021401|gb|ADV96387.1| pre-queuosine 0 synthase [Bacillus subtilis BSn5]
          Length = 219

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   LL AL            +   ++  +  R +   E+     +  +L
Sbjct: 7  IVV-FSGGQDSTTCLLWALKEFE--------EVETVTFHYNQRHS--QEIEVAKSIAEKL 55

Query: 81 RIAHSVVS 88
           + + ++ 
Sbjct: 56 GVKNHLLD 63


>gi|313623937|gb|EFR94042.1| phosphoadenosine phosphosulfate sulfotransferase [Listeria
          innocua FSL J1-023]
          Length = 434

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKDEVRYVSDV 76
           +I+V+ SGG DS  +L  +   +   +  + K     +D+      T+     +V+++
Sbjct: 22 DNIIVSFSGGKDSAVMLHLMIDYIRKNNIQR-KIYVYHLDYEGQYSATSD----FVAEI 75


>gi|296329698|ref|ZP_06872183.1| pre-queuosine 0 synthase [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305674095|ref|YP_003865767.1| pre-queuosine 0 synthase [Bacillus subtilis subsp. spizizenii
          str. W23]
 gi|296153196|gb|EFG94060.1| pre-queuosine 0 synthase [Bacillus subtilis subsp. spizizenii
          ATCC 6633]
 gi|305412339|gb|ADM37458.1| pre-queuosine 0 synthase [Bacillus subtilis subsp. spizizenii
          str. W23]
          Length = 219

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   LL AL            +   ++  +  R +   E+     +  +L
Sbjct: 7  IVV-FSGGQDSTTCLLWALKEFE--------EVETVTFHYNQRHS--QEIEVAKSIAEKL 55

Query: 81 RIAHSVVS 88
           + + ++ 
Sbjct: 56 GVKNHLLD 63


>gi|291483907|dbj|BAI84982.1| hypothetical protein BSNT_02306 [Bacillus subtilis subsp. natto
          BEST195]
          Length = 219

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   LL AL            +   ++  +  R +   E+     +  +L
Sbjct: 7  IVV-FSGGQDSTTCLLWALKEFE--------EVETVTFHYNQRHS--QEIEVAKSIAEKL 55

Query: 81 RIAHSVVS 88
           + + ++ 
Sbjct: 56 GVKNHLLD 63


>gi|238893393|ref|YP_002918127.1| queuosine biosynthesis protein QueC [Klebsiella pneumoniae
          NTUH-K2044]
 gi|238545709|dbj|BAH62060.1| putative (aluminum) resistance protein [Klebsiella pneumoniae
          subsp. pneumoniae NTUH-K2044]
          Length = 233

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 R-IAHSVVSW 89
            +AH V+  
Sbjct: 54 GAVAHKVLDV 63


>gi|118442853|ref|YP_878459.1| exsB protein [Clostridium novyi NT]
 gi|189038910|sp|A0Q1F7|QUEC_CLONN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|118133309|gb|ABK60353.1| exsB protein [Clostridium novyi NT]
          Length = 221

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 18/71 (25%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDVC 77
          I+V  SGG DS   L       + + F   +  A+S D    H L      E+    ++C
Sbjct: 9  IVV-FSGGQDSTTCLF-----WTKKRFK--EVIAVSFDYNQKHKL------ELECAKEIC 54

Query: 78 SRLRIAHSVVS 88
          S+  I H ++ 
Sbjct: 55 SKYNIEHHILD 65


>gi|78067272|ref|YP_370041.1| sulfate adenylyltransferase subunit 2 [Burkholderia sp. 383]
 gi|77968017|gb|ABB09397.1| sulfate adenylyltransferase subunit 2 [Burkholderia sp. 383]
          Length = 320

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L        L       + F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLHLALKAFGLGANRKTTLPFPLVHIDTGHNYEEVIDFRDRRAQELGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K           +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVVLRRETDSRNAAQAVTLLETIEQHGYTALIGGARRD 156


>gi|30261440|ref|NP_843817.1| exsB protein [Bacillus anthracis str. Ames]
 gi|47526629|ref|YP_017978.1| ExsB family transcriptional regulator [Bacillus anthracis str.
          'Ames Ancestor']
 gi|49184274|ref|YP_027526.1| exsB protein [Bacillus anthracis str. Sterne]
 gi|165870370|ref|ZP_02215025.1| exsB protein [Bacillus anthracis str. A0488]
 gi|167634318|ref|ZP_02392639.1| exsB protein [Bacillus anthracis str. A0442]
 gi|167639318|ref|ZP_02397590.1| exsB protein [Bacillus anthracis str. A0193]
 gi|170686660|ref|ZP_02877880.1| exsB protein [Bacillus anthracis str. A0465]
 gi|170706321|ref|ZP_02896782.1| exsB protein [Bacillus anthracis str. A0389]
 gi|177651440|ref|ZP_02934229.1| exsB protein [Bacillus anthracis str. A0174]
 gi|190568037|ref|ZP_03020947.1| exsB protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035303|ref|ZP_03102708.1| exsB protein [Bacillus cereus W]
 gi|218902547|ref|YP_002450381.1| exsB protein [Bacillus cereus AH820]
 gi|227815813|ref|YP_002815822.1| exsB protein [Bacillus anthracis str. CDC 684]
 gi|229603244|ref|YP_002865853.1| exsB protein [Bacillus anthracis str. A0248]
 gi|254682497|ref|ZP_05146358.1| exsB protein [Bacillus anthracis str. CNEVA-9066]
 gi|254726160|ref|ZP_05187942.1| exsB protein [Bacillus anthracis str. A1055]
 gi|254733913|ref|ZP_05191627.1| exsB protein [Bacillus anthracis str. Western North America
          USA6153]
 gi|254740397|ref|ZP_05198088.1| exsB protein [Bacillus anthracis str. Kruger B]
 gi|254753787|ref|ZP_05205822.1| exsB protein [Bacillus anthracis str. Vollum]
 gi|254758884|ref|ZP_05210911.1| exsB protein [Bacillus anthracis str. Australia 94]
 gi|81582971|sp|Q81TC7|QUEC_BACAN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764300|sp|C3P4F6|QUEC_BACAA RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764301|sp|C3LAL0|QUEC_BACAC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764302|sp|B7JFS4|QUEC_BACC0 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|30255294|gb|AAP25303.1| protein ExsB [Bacillus anthracis str. Ames]
 gi|47501777|gb|AAT30453.1| exsB protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178201|gb|AAT53577.1| exsB protein [Bacillus anthracis str. Sterne]
 gi|164713865|gb|EDR19387.1| exsB protein [Bacillus anthracis str. A0488]
 gi|167512757|gb|EDR88131.1| exsB protein [Bacillus anthracis str. A0193]
 gi|167530206|gb|EDR92932.1| exsB protein [Bacillus anthracis str. A0442]
 gi|170128855|gb|EDS97721.1| exsB protein [Bacillus anthracis str. A0389]
 gi|170669183|gb|EDT19926.1| exsB protein [Bacillus anthracis str. A0465]
 gi|172082718|gb|EDT67781.1| exsB protein [Bacillus anthracis str. A0174]
 gi|190560771|gb|EDV14746.1| exsB protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991980|gb|EDX55943.1| exsB protein [Bacillus cereus W]
 gi|218536698|gb|ACK89096.1| exsB protein [Bacillus cereus AH820]
 gi|227003186|gb|ACP12929.1| protein ExsB [Bacillus anthracis str. CDC 684]
 gi|229267652|gb|ACQ49289.1| exsB protein [Bacillus anthracis str. A0248]
          Length = 220

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ ++  R   K E+    ++   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEIDCAVEIAKEL 55

Query: 81 RIAHSVVS 88
           I H+V+ 
Sbjct: 56 GIKHTVLD 63


>gi|295096770|emb|CBK85860.1| preQ(0) biosynthesis protein QueC [Enterobacter cloacae subsp.
          cloacae NCTC 9394]
          Length = 231

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ ALH           +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLIQALHQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|218131789|ref|ZP_03460593.1| hypothetical protein BACEGG_03410 [Bacteroides eggerthii DSM 20697]
 gi|217986092|gb|EEC52431.1| hypothetical protein BACEGG_03410 [Bacteroides eggerthii DSM 20697]
          Length = 357

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 63/215 (29%), Gaps = 70/215 (32%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           +++   +     +L+ +SGG+DS     A+  + +      + F    VD   R    D+
Sbjct: 2   KYYFCGMKSKERVLLGMSGGTDSSV--AAMRLLDAGYEVTGVTFRFYEVDG--RTEYLDD 57

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY---------------------- 107
                 + +RL I H     +    +       R  RY                      
Sbjct: 58  A---RALAARLGIEHVTYDAQELFRE-------RIIRYFIDEYLAGHTPVPCTLCNNELK 107

Query: 108 -ALISEHAKTINATLIMTAHTF----------------DDQLETVYMRSQRDYAEKGMGL 150
            AL++  A       I T H                   D+ +T +             L
Sbjct: 108 WALLARIADEKGIYWISTGHYARKALLGEQCYIAPASDRDKDQTFF-------------L 154

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            G+   IL  +      P     +E+ R++   R 
Sbjct: 155 WGLKQDILQRM----LLPMGDVTKEEARAYAAGRG 185


>gi|149908785|ref|ZP_01897445.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Moritella sp. PE36]
 gi|149808059|gb|EDM68000.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Moritella sp. PE36]
          Length = 526

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+     +++ +    +++ +SGG DS  + + L   + D      K + + VD+  L
Sbjct: 213 SIIDDAIARMKAQIGDDEVILGLSGGVDSSVVAMLLQRAIGD------KLTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E + V D    R  +    V  ++         +  EA+  +I           
Sbjct: 267 RLN---EGQQVMDMFGDRFGLKIVHVKAEDRFLDQMAGESDPEAKRKIIGRVFVEIFDEE 323

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + ++     +        +  D+ + +  P    
Sbjct: 324 SKKLTNAKWLAQGTIYPDVIES---AATKNGKAHVIKSHHNVGGLPDDMEMGLIEPLREL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 381 FKDEVRKIGLELGLPY 396


>gi|124027451|ref|YP_001012771.1| thiamine biosynthesis protein ThiI [Hyperthermus butylicus DSM
           5456]
 gi|123978145|gb|ABM80426.1| probable thiamine biosynthesis protein, ThiI [Hyperthermus
           butylicus DSM 5456]
          Length = 388

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 33/176 (18%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL-- 80
           LV  SGG DS            +        +           +  +   V    + L  
Sbjct: 183 LVLFSGGLDSPVAAWYTAKRGVEVDLLHFILAV--------PASARDAERVGRRLAELWL 234

Query: 81  ----------RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
                           V+  ++  +       R A Y      A+      ++T      
Sbjct: 235 YGYKPKLFLVDFRPVTVTIASNTRRGYEQIVLRLAMYYAAQLIAEKHGYDAVVTG----- 289

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             E++     +  ++    +  M   +     L + RP     +E+I +   +  +
Sbjct: 290 --ESI----GQVSSQTLKNMKAMAQALPLR--LPLIRPLAGMDKEEIVTVCRRIGV 337


>gi|33634533|emb|CAE20519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 431

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 58/219 (26%), Gaps = 50/219 (22%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDH 60
            +      ++       + V +SGG DS      L           +       A     
Sbjct: 42  AVAKALTRLQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSGKGACC--- 98

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVS-------------WKNSKPQTGLMAAAREAR- 106
                  D +   + +C +L+I H VV               +  +     +  +R  R 
Sbjct: 99  ------SDGLIDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRS 152

Query: 107 ---YALISEHAKTINATLIMTAH-----TFDD----QLETVY-------MRSQRDYAEKG 147
                ++S   K +    + T H       +D    Q             +  R   +  
Sbjct: 153 VKFAEMLSWAKKELQLHRVATGHYARIRHREDPEPQQA---LPGDSIGRHQLLRGLDQNK 209

Query: 148 MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
                + D +  D+   +  P     + + R    +  +
Sbjct: 210 DQSYFLYD-LSQDVLAKVIFPLGELTKAETRQEAERYGL 247


>gi|297617393|ref|YP_003702552.1| exsB protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145230|gb|ADI01987.1| exsB protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 217

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 23/115 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS      L +VL+ R    I   A++VD+  ++    EV     + +   I H 
Sbjct: 8   LSGGLDST-----LCTVLALRDMEVI--LALTVDYG-QKARTREVESAGRIAAFYNIPHR 59

Query: 86  VVSWKNSKP-QTGLMAAAREAR--------------YALISEHAKTINATLIMTA 125
           VV     +   +GL  A R  R                + + +A+ + A  ++  
Sbjct: 60  VVEAGFLRTFASGLTRAERSTRSSREVWVPNRNGLFINIAACYAEEMGAEAVLVG 114


>gi|170290811|ref|YP_001737627.1| thiamine biosynthesis/tRNA modification protein ThiI [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174891|gb|ACB07944.1| thiamine biosynthesis/tRNA modification protein ThiI [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 373

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 38/178 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS--DVC 77
             +L  +SGG DS      L      R    I           R+++ +E  ++   +V 
Sbjct: 175 GKVLALISGGIDSPVAAWLLMR----RGAQIIPLH-------FRKSSAEEETFIKIVNVL 223

Query: 78  SR--LRIAHSVVSWKNSKPQTGLMAAAREA------RYALI--SEHAKTINATLIMTAHT 127
            R    +    +  ++ +  + +   ARE       R  L+  +  AK I A  I+T  +
Sbjct: 224 RRYSYGVKMEPMILEHGEFLSEISREAREWTCLLCKRRMLLTANRIAKEIGAHGIVTGDS 283

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
                                      +     L   + RP +   +EDI     +  
Sbjct: 284 LGQVASQTLANL---------------EVESRCLEKPVFRPLIGMDKEDIVKIAKEIG 326


>gi|78188567|ref|YP_378905.1| GMP synthase [Chlorobium chlorochromatii CaD3]
 gi|91206800|sp|Q3AT13|GUAA_CHLCH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78170766|gb|ABB27862.1| GMP synthase (glutamine-hydrolyzing) [Chlorobium chlorochromatii
           CaD3]
          Length = 511

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R       ++  +SGG DS    + +   +        +   + VD+  LR+    E  
Sbjct: 212 IRRKAGNNTVICGISGGVDSTVAAVLVSKAIGK------QLHCVFVDNGLLRKN---EAE 262

Query: 72  YVSDVCSRLRIAHS-----VVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            V      L +  +      +  K  K         +      I    + I+    +   
Sbjct: 263 KVMHFLKPLGLHITLADSSDLFLKRLKGVASPEKKRKIIGRTFIQVFEEQIHHEKFLVQG 322

Query: 127 TF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           T   D +E++ ++   +  +    + G+       + L +  P     ++++R+   +  
Sbjct: 323 TLYPDVIESISVKGPSETIKSHHNVGGL----PKRMKLKLIEPLRELFKDEVRAVGRELG 378

Query: 186 ISWCED 191
           I   ED
Sbjct: 379 IP--ED 382


>gi|218438056|ref|YP_002376385.1| ExsB family protein [Cyanothece sp. PCC 7424]
 gi|218170784|gb|ACK69517.1| ExsB family protein [Cyanothece sp. PCC 7424]
          Length = 272

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 53/199 (26%), Gaps = 40/199 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E +    + +      L+A SGG DS  +    + +L DR+   +  +A+    
Sbjct: 1   MVTQLLEQLTTLFKQMDRA---LIAYSGGVDSTLVAKIAYDILGDRA---LAVTAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEH 113
               +   +E+       + + I H ++                     +   +  +   
Sbjct: 51  --SPSLLPEELEDAKIQAATIGITHELIQTHEMDNPNYTSNPVNRCYFCKSELHDTLKPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           A       I+     DD                   L      I       +  P     
Sbjct: 109 AMQRGYPYIIDGVNADD-------------------LQDYRPGIQAAKERGVRSPLAETG 149

Query: 172 CRREDIRSFLLQRNISWCE 190
             +  +R       + W +
Sbjct: 150 ITKAQVRQLSQYLGLPWWD 168


>gi|119718153|ref|YP_925118.1| hydrolase [Nocardioides sp. JS614]
 gi|119538814|gb|ABL83431.1| Haloacid dehalogenase domain protein hydrolase [Nocardioides sp.
           JS614]
          Length = 472

 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS-VDHCLRETAKDEVRYV 73
            L     +LVA SGG+DS  LL A     + R+ G  + +A +   H L   A+ +    
Sbjct: 214 DLRERGSVLVAYSGGADSAFLLAA-----AVRALGADRVAAATGYSHSL-PLAERDPA-- 265

Query: 74  SDVCSRLRIA------HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
            D  + L +       H +                +     +++  A       + T   
Sbjct: 266 RDFAAALGVEVLTPATHEIEREGYRSNGADRCYFCKAELLDVLTPLAAGRGLAHVATGTN 325

Query: 128 FDD 130
            DD
Sbjct: 326 ADD 328


>gi|300866011|ref|ZP_07110745.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336002|emb|CBN55903.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 271

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 56/201 (27%), Gaps = 44/201 (21%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E ++     +      L+A SGG DS  +      +L +R+   +  +A+    
Sbjct: 1   MLTEKLEQLQTIFSQMDRA---LIAYSGGIDSTLVAKIAFDMLGNRA---LAVTAV---- 50

Query: 61  CLRET---AKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALIS 111
               +      E   +  +   + IAH  V  +       +          +   +  + 
Sbjct: 51  --SPSLLPEDLEDARIQAL--SIGIAHEEVQTQEMANPNYTSNPVNRCYFCKSELHDTLK 106

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF-- 169
             A     + ++     DD                   L      I          P   
Sbjct: 107 PLAIERGYSYVVDGVNADD-------------------LKDYRPGIQAAKERGARSPLAE 147

Query: 170 LRCRREDIRSFLLQRNISWCE 190
           +   + ++R    +  + W +
Sbjct: 148 VGVTKLEVRQLAKELGLPWWD 168


>gi|219120979|ref|XP_002185721.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582570|gb|ACI65191.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 418

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 31/185 (16%)

Query: 18  YPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
               +L+A SGG D S+ L       LS++ F  I F A   +    E    +   V   
Sbjct: 4   AKPKLLLAYSGGLDTSVIL-----KWLSEKGFDVIAFCA---NVGQHEE---DFSAVKAK 52

Query: 77  CSRLRIAHSVVS------WKNSKPQTGLMAAAREARYALISEHAKTINA-TLIMTAHTFD 129
                    V+S        +   +     A  E RY L +  A+   A  +I  AH   
Sbjct: 53  AESCGATKCVISDLRKEFVDDYVLEAIKCNAIYEGRYLLGTSIARPCIAKEMIRIAH--- 109

Query: 130 DQLETVYMRSQRDYAEKGM-------GLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           ++  T             +        LS     +    +      F    R+D+ ++  
Sbjct: 110 EEGATFIAHGATGKGNDQVRFEMCCQALSPTIQCVAPWRDAEFIESFKG--RKDLLAYCN 167

Query: 183 QRNIS 187
           Q  I 
Sbjct: 168 QHQIP 172


>gi|298735640|ref|YP_003728165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
 gi|298354829|emb|CBI65701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B8]
          Length = 360

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 34/142 (23%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
             +R    +      I V +SGG DS     +L     +     +K  A           
Sbjct: 6   ARLRAITHNERLKMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA----------- 54

Query: 67  KDEVRY------VSDVCSRLRIAHSVVSWKNSKPQTGLMA--AARE-------------- 104
             E ++          C  L I   V+ ++            +A E              
Sbjct: 55  -SEKKHDLYIKNAQKACEFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPL 113

Query: 105 ARYALISEHAKTINATLIMTAH 126
            ++ L  +HA  +    I T H
Sbjct: 114 MKFGLALDHALQLGCEKIATGH 135


>gi|221488793|gb|EEE27007.1| GMP synthase, putative [Toxoplasma gondii GT1]
          Length = 569

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI 51
             + +++    +++LV  AH+L A+SGG DS      +H  + DR  G +
Sbjct: 250 MKNFLQAEIRKIQTLVGDAHVLGALSGGVDSTVAAALVHKAIGDRFHGVL 299


>gi|303247112|ref|ZP_07333387.1| argininosuccinate synthase [Desulfovibrio fructosovorans JJ]
 gi|302491538|gb|EFL51423.1| argininosuccinate synthase [Desulfovibrio fructosovorans JJ]
          Length = 397

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 61/200 (30%), Gaps = 39/200 (19%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVC 77
             +++A SGG D S+ L          +     +   ++ D    E     E + +    
Sbjct: 5   KKVVLAYSGGLDTSVIL-------KWIKKTYDCEVITVTCDLGQEEELDGLEEKALRTGA 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINATLI----------MTAH 126
           S+  I      +        L A A  E RY L +  A+ + A  +            AH
Sbjct: 58  SKAYIDDLREEFAKDFIFPMLRAGAVYEGRYLLGTSIARPLIAKRLVDVARAEGAQAVAH 117

Query: 127 TF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                 +DQ+     R +         L  +     +D             R D+ +F  
Sbjct: 118 GATGKGNDQV-----RFELTTGVLAPDLRTIAPWREWD----------FASRTDLINFAK 162

Query: 183 QRNISWCEDPSNTDDRFERV 202
           Q  I    D   +D   +R 
Sbjct: 163 QNGIPVPSDKKGSDHSMDRN 182


>gi|283834237|ref|ZP_06353978.1| ExsB protein [Citrobacter youngae ATCC 29220]
 gi|291069754|gb|EFE07863.1| ExsB protein [Citrobacter youngae ATCC 29220]
          Length = 231

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  ALH           +   ++ D+  R  A+ +V    D+  +L
Sbjct: 5  VVV-FSGGQDSTTCLAQALHQYD--------EVHCVTFDYGQRHRAEIDVA--RDLALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|297837025|ref|XP_002886394.1| hypothetical protein ARALYDRAFT_893078 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332235|gb|EFH62653.1| hypothetical protein ARALYDRAFT_893078 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 534

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E ++   +++    H++ A+SGG DS      +H  + DR         I VD+  LR  
Sbjct: 215 EEIKVINQTVASDEHVICALSGGVDSTVAATLVHKAIGDR------LHCIFVDNGLLR-- 266

Query: 66  AKDEVRYVSDVCSR-LRIAHSVVS 88
              E   V D   R L +  + V 
Sbjct: 267 -YKEQERVMDTFERDLHLPVTCVD 289


>gi|291458888|ref|ZP_06598278.1| argininosuccinate synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418142|gb|EFE91861.1| argininosuccinate synthase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 417

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 34/194 (17%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---- 65
           +   ++      +++A SGG D+         +   +     +   + VD    E     
Sbjct: 3   KLMPKNKTQGEKVVLAYSGGLDTTA------IIPWLKENFGYEVICVCVDVGQGEELDGL 56

Query: 66  ------AKDEVRYVS----DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAK 115
                 +     Y+     D C    +     +           A AR A    + E A+
Sbjct: 57  SERAKLSGAAKLYIEDISDDFCENYVLPCIRANACYENKYLLGTAMARPAIAKRLVEIAR 116

Query: 116 TINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
              A  I    T   +DQ+     R +         L  +    + D  +W  R      
Sbjct: 117 KEGAKAICHGATGKGNDQI-----RFELAIKALAPDLDILAPWRMSD--VWTFR-----S 164

Query: 174 REDIRSFLLQRNIS 187
           RED  ++  ++ I 
Sbjct: 165 REDEIAYCKEKGID 178


>gi|262306029|gb|ACY45607.1| gln amidotransferase [Dinothrombium pandorae]
          Length = 196

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          +++ +V    +L+ VSGG DS      LH  L        +  A  +D
Sbjct: 36 YIKKIVGNNKVLMLVSGGVDSTVCAALLHKALK-----PDQVIAFHID 78


>gi|237837317|ref|XP_002367956.1| GMP synthase, putative [Toxoplasma gondii ME49]
 gi|211965620|gb|EEB00816.1| GMP synthase, putative [Toxoplasma gondii ME49]
 gi|221509282|gb|EEE34851.1| GMP synthase, putative [Toxoplasma gondii VEG]
          Length = 569

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI 51
             + +++    +++LV  AH+L A+SGG DS      +H  + DR  G +
Sbjct: 250 MKNFLQAEIRKIQTLVGDAHVLGALSGGVDSTVAAALVHKAIGDRFHGVL 299


>gi|254168754|ref|ZP_04875596.1| NAD+ synthetase [Aciduliprofundum boonei T469]
 gi|289596848|ref|YP_003483544.1| NAD+ synthetase [Aciduliprofundum boonei T469]
 gi|197622380|gb|EDY34953.1| NAD+ synthetase [Aciduliprofundum boonei T469]
 gi|289534635|gb|ADD08982.1| NAD+ synthetase [Aciduliprofundum boonei T469]
          Length = 263

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 19/89 (21%)

Query: 7  ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
          E++  F+R  V   + ++ +SGG DS  +       L     GK K   + +       +
Sbjct: 12 ETIIRFIRDFVGDKNAVIGLSGGLDSSTVAFLCVKAL-----GKDKVLGVHM-----PDS 61

Query: 67 ------KDEVRYVSDVCSRLRIAHSVVSW 89
                K++ + V     +L I    +  
Sbjct: 62 ITPKEDKEDAKLV---AEKLGIEFRTIEI 87


>gi|317491836|ref|ZP_07950271.1| tRNA(Ile)-lysidine synthase [Enterobacteriaceae bacterium
          9_2_54FAA]
 gi|316920270|gb|EFV41594.1| tRNA(Ile)-lysidine synthase [Enterobacteriaceae bacterium
          9_2_54FAA]
          Length = 407

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          + + V+ SGG DS  LL  +       +    KF  + +D
Sbjct: 31 SRVCVSFSGGKDSTVLLHLVAEYAKAHNR---KFDVLFID 67


>gi|268679972|ref|YP_003304403.1| NAD+ synthetase [Sulfurospirillum deleyianum DSM 6946]
 gi|268618003|gb|ACZ12368.1| NAD+ synthetase [Sulfurospirillum deleyianum DSM 6946]
          Length = 267

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 25/128 (19%)

Query: 12  FVRSLVYPA---HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETA 66
           F++  V  A   +++V +SGG DS  + +       +       F A+     L    ++
Sbjct: 26  FLQHEVKKAGFSNVIVGISGGVDSAVVAVLAQKAFKE------NFLAL----MLPSSTSS 75

Query: 67  KDEVRYVSDVCSRLRIAHSVV-------SWKNSKPQTG---LMAAAREARYALISEHAKT 116
           K  + + +++C +  I    +       S+ ++ P      +       R A++ + A  
Sbjct: 76  KASLEHATELCEKFAIRVERIPIGALAESYFHNDPHASKLRIGNFCARMRMAVLYDIAAR 135

Query: 117 INATLIMT 124
            +A ++ T
Sbjct: 136 EHALVLGT 143


>gi|110597996|ref|ZP_01386277.1| ExsB [Chlorobium ferrooxidans DSM 13031]
 gi|110340445|gb|EAT58934.1| ExsB [Chlorobium ferrooxidans DSM 13031]
          Length = 226

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V +SGG DS+      H           + +A+ V++  R   K+   +  D+C+   I
Sbjct: 4  VVLLSGGMDSLVTTAMAHE-------HGFELAAMHVNYGQRTWHKELASF-RDICNHYNI 55


>gi|29654638|ref|NP_820330.1| GMP synthase [Coxiella burnetii RSA 493]
 gi|44887951|sp|Q83BZ6|GUAA_COXBU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|29541906|gb|AAO90844.1| GMP synthase (glutamine-hydrolyzing) [Coxiella burnetii RSA 493]
          Length = 524

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 94/288 (32%), Gaps = 38/288 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++V +SGG DS      +H  + D      +   + VD   LR    DEV 
Sbjct: 221 IQEKVGKEQVIVGLSGGVDSAVTATLVHKAIGD------QLVCVLVDTGLLRLNEVDEVL 274

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTINATLIM 123
            V      L      V  K+      K  +      + A         E AK +N   + 
Sbjct: 275 NVFQ--KHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLG 332

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+   ++ + +  K          +  ++ L +  P     ++++R   L+
Sbjct: 333 QGTIYPDVIESAKTKTGKGHIIK---THHNVGGLPLNMELKLIEPLRELFKDEVRKLGLE 389

Query: 184 RNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +         D  + R         +R+   V    ++ L      F +   K +   
Sbjct: 390 LGLP-------ADLIY-RHPFPGPGLAIRILGEVSAEYINILKQADAIFIEELKKSDYYH 441

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
            +     + + ++S + +  D  +    +    ++    +      LP
Sbjct: 442 QVSQAFAVFMPLKS-VGVKGDARHYGYIIALRAVKTVDFMTAQWADLP 488


>gi|311694977|gb|ADP97850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [marine bacterium HP15]
          Length = 395

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 33/131 (25%), Gaps = 35/131 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------- 73
            ++V +SGG DS      L           +K               D   Y        
Sbjct: 17  RVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNW----------DEDDGTEYCTAMTDLA 66

Query: 74  --SDVCSRLRIAHSVVSWKNSKPQTGLM------AAAR----------EARYALISEHAK 115
               V   + I     S+                 A R          E ++    ++A 
Sbjct: 67  DAQAVADAIGIKLHTASFAAEYWDRVFEHFLSEYQAGRTPNPDILCNKEVKFRAFLDYAI 126

Query: 116 TINATLIMTAH 126
           T+ A  I T H
Sbjct: 127 TLGADYIATGH 137


>gi|253683532|ref|NP_001156660.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos
           taurus]
 gi|296486862|gb|DAA28975.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos
           taurus]
          Length = 417

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 32/131 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYV 73
            H++ AVSGG DS    + L            +++  +    +        TA  +    
Sbjct: 5   RHVVCAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVC-------TADRDCEDA 57

Query: 74  SDVCSRLRIAHSVVSWKNS------KPQTGLMAAAR------------EARYALISEHAK 115
             VC  L I    VS+                   R            + R    +    
Sbjct: 58  YRVCRILDIPFRQVSYAKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFR-CFFNYAVD 116

Query: 116 TINATLIMTAH 126
            + A  + T H
Sbjct: 117 NLGADAVATGH 127


>gi|78187788|ref|YP_375831.1| GMP synthase [Chlorobium luteolum DSM 273]
 gi|91206815|sp|Q3B1J3|GUAA_PELLD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78167690|gb|ABB24788.1| GMP synthase (glutamine-hydrolyzing) [Chlorobium luteolum DSM 273]
          Length = 513

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R       ++  +SGG DS    + +   +        +   + VD+  LR+    E R
Sbjct: 214 IRQRADKGTVICGISGGVDSTVAAVLVSKAIGK------QLHCVFVDNGLLRKN---EAR 264

Query: 72  YVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            V +    L +  ++    +      K         +      I    + IN    +   
Sbjct: 265 KVMEFLKPLGLNITLADSADLFLGRLKGVASPEKKRKIIGRTFIRVFEEHINEEKFLVQG 324

Query: 127 TF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           T   D +E+   +S +  +E  +        +   + L +  P     ++++R+   +  
Sbjct: 325 TLYPDVIES---QSVKGPSET-IKSHHNVGGLPKRMKLKLIEPLRELFKDEVRAVGRELG 380

Query: 186 ISWCED 191
           I   ED
Sbjct: 381 IP--ED 384


>gi|54294610|ref|YP_127025.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Legionella pneumophila str. Lens]
 gi|81368495|sp|Q5WVX4|GUAA_LEGPL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|53754442|emb|CAH15926.1| hypothetical protein lpl1686 [Legionella pneumophila str. Lens]
          Length = 525

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 22/187 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + +      +   + VD   LR     E  
Sbjct: 220 IREQVGTEKVLLGLSGGVDSSVVAALLHRAIGE------QLVCVFVDTGLLRLN---EAE 270

Query: 72  YVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAA----REARYALISEHAKTINATL 121
            V       + I    V+ ++      K  T          R        E  K  +   
Sbjct: 271 QVLSMFGRHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEVFDEEAQKLTDIKW 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    +  + A   +        +   LNL +  P     ++++R   
Sbjct: 331 LAQGTIYPDVIESA--ATSTNDAAVVIKSHHNVGGLPDTLNLKLLEPIRELFKDEVRQVG 388

Query: 182 LQRNISW 188
           L+  +  
Sbjct: 389 LELGLPH 395


>gi|84498222|ref|ZP_00997019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janibacter sp. HTCC2649]
 gi|84381722|gb|EAP97605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Janibacter sp. HTCC2649]
          Length = 374

 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 27/129 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAK-----DEVRYV 73
            ++ A+SGG DS      +     +     +    SA +    LRE+A+     ++    
Sbjct: 2   RVVAAMSGGVDSAVAAARMLDAGHEVVGVHLALSRSAAT----LRESARGCCTIEDAGDA 57

Query: 74  SDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAARE-ARYALISEHAKTI 117
             V  RL I   V               V+   +           E  ++A + + A  +
Sbjct: 58  RRVADRLGIPFYVWDMAERFQRDVMDDFVAEYQAGRTPNPCLRCNESIKFAALLDRAVAL 117

Query: 118 NATLIMTAH 126
               + T H
Sbjct: 118 GFDAVATGH 126


>gi|329925236|ref|ZP_08280179.1| protein ExsB [Paenibacillus sp. HGF5]
 gi|328940069|gb|EGG36402.1| protein ExsB [Paenibacillus sp. HGF5]
          Length = 225

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 63/208 (30%), Gaps = 56/208 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ++V  SGG DS   L       ++          ++ D+  R   K E+   + 
Sbjct: 2   LKNEKAVVV-FSGGQDSTTCLFWAKERFAE-------VETVTFDYGQRH--KLEIECAAQ 51

Query: 76  VCSRLRIAHSVVS-------WKNSKPQTGLMAA-----------AREARY-ALISEHAKT 116
           +     +  +V+          N+  ++ +  A            R   + +  +  AK 
Sbjct: 52  IAKEQGVKQTVLDMSLLNQLAPNALTRSDIEIAEGDGLPTTFVDGRNLLFLSFAAVLAKG 111

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------IS 166
           + A  ++T        ET              G     D+ +  LN+           I 
Sbjct: 112 VGAKHLITG-----VCET-----------DFSGYPDCRDSFIKSLNVTLNLAMDYPFVIH 155

Query: 167 RPFLRCRREDIRSFLLQRN-ISWCEDPS 193
            P +   + +      Q N + +  D +
Sbjct: 156 TPLMWLDKSETWELADQMNALEYVRDHT 183


>gi|325957778|ref|YP_004289244.1| NH(3)-dependent NAD(+) synthetase [Methanobacterium sp. AL-21]
 gi|325329210|gb|ADZ08272.1| NH(3)-dependent NAD(+) synthetase [Methanobacterium sp. AL-21]
          Length = 277

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 59/193 (30%), Gaps = 23/193 (11%)

Query: 4   SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             I+ +  F++  V  +    +++ +SGG DS          L       I     +   
Sbjct: 15  KTIKQLSEFIKDKVSQSRSAGVVIGLSGGIDSATTAYLCARALEKEQILGIIMPTET--- 71

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREARY---ALISEHA 114
               T+ +++     V   L I + +++  +      +  + + + + +      ++   
Sbjct: 72  ----TSYEDIDDAVTVAEELGIEYEIIAVDDLISPFNELCMHSVSNKLKNTPSRSLANAN 127

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                 +++  +  +D       R       +   L G      Y        P     +
Sbjct: 128 LKARIRMMILYYHAND-----LGRMVVGTGNRTELLIGYFTK--YGDGGVDILPIGNLYK 180

Query: 175 EDIRSFLLQRNIS 187
            ++RS      + 
Sbjct: 181 TEVRSIAQILGVP 193


>gi|296162033|ref|ZP_06844832.1| Sulfate adenylyltransferase [Burkholderia sp. Ch1-1]
 gi|295887777|gb|EFG67596.1| Sulfate adenylyltransferase [Burkholderia sp. Ch1-1]
          Length = 320

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 8/131 (6%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVD-- 59
             I  +R  V     PA +    SGG DS+ +L                + F  + +D  
Sbjct: 29  ESIHILRELVAECGKPALL---FSGGKDSVVVLHLALKAFGIGANRKTVLPFPLVHIDTG 85

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTIN 118
           H   E      R   ++ + L + H   S K    +      +R A  A+ + E  +   
Sbjct: 86  HNYEEVIDFRDRRAKEIGAELVVGHVEDSIKRGTVRLRRETDSRNAAQAVTLLETIEEYG 145

Query: 119 ATLIMTAHTFD 129
            T ++     D
Sbjct: 146 YTALIGGARRD 156


>gi|153008345|ref|YP_001369560.1| exsB protein [Ochrobactrum anthropi ATCC 49188]
 gi|167016440|sp|A6WXM7|QUEC_OCHA4 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|151560233|gb|ABS13731.1| exsB protein [Ochrobactrum anthropi ATCC 49188]
          Length = 232

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS+ L      + S+     +    +S D+  R   K E+        RL 
Sbjct: 4  LVV-CSGGLDSVSLAY---RIASEHQLTAL----LSFDYGQRH--KKELDSAKACAERLG 53

Query: 82 IAHSVVSWKN 91
          + H ++   N
Sbjct: 54 VPHQIIDITN 63


>gi|73961620|ref|XP_855063.1| PREDICTED: similar to FAD synthetase isoform 1 [Canis familiaris]
          Length = 490

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 50/173 (28%), Gaps = 35/173 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETA--KDEVRYVSDVC 77
           H+ V  +GG D   LL  LH+ +  +    +     + +    R  +   +  +++ D  
Sbjct: 301 HLCVGFNGGKDCTALLHLLHAAVQRKCPDAQEPLQILYI----RSISPFPELEQFLQDTI 356

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            R  +   V+  +    Q      AR                           QLE V M
Sbjct: 357 KRYNL--QVLEAEGDMKQALSELQARHP-------------------------QLEAVLM 389

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
              R        L     T           P L     DI  FL Q  + +C 
Sbjct: 390 G-TRRTDPYSCSLCPFSPTDPGWPAFMRVNPLLDWTYRDIWDFLRQLFVPYCI 441


>gi|224824583|ref|ZP_03697690.1| exsB protein [Lutiella nitroferrum 2002]
 gi|224603076|gb|EEG09252.1| exsB protein [Lutiella nitroferrum 2002]
          Length = 230

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          LV +SGG DS   L       + + FG     A++ D+  R   + E+     + +   +
Sbjct: 8  LVVLSGGQDSTTCLY-----WALQRFGADNVEAVTFDYGQRH--RVELDSARTIAALAGV 60

Query: 83 AHSVVSWK 90
           H+V+   
Sbjct: 61 PHTVLPID 68


>gi|212635181|ref|YP_002311706.1| ExsB protein [Shewanella piezotolerans WP3]
 gi|254764384|sp|B8CM62|QUEC_SHEPW RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|212556665|gb|ACJ29119.1| ExsB [Shewanella piezotolerans WP3]
          Length = 228

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 44/189 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           I+V  SGG DS   L+ AL            +   ++ D+  R   + E+    ++ S+L
Sbjct: 5   IVV-FSGGQDSTTCLIQALTQYD--------EVHCVTFDYGQRH--RQEIEIAKELSSKL 53

Query: 81  RI-AHSVVSW--------------------KNSKPQTGLMAAAREARYALISEH-AKTIN 118
              +H V+                      K+           R   +  ++   A  IN
Sbjct: 54  GASSHQVLDVGILNDLTVSALTRDIPIEENKDGNAIPNTFVPGRNILFLTLAGIYAYQIN 113

Query: 119 ATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           A +I+T        ET +      R+   K M  + M      D  L IS P +   + +
Sbjct: 114 ADVIITG-----VCETDFSGYPDCRNEFIKSMQTALMQGM---DKQLTISTPLMWLDKAE 165

Query: 177 IRSFLLQRN 185
             +   + N
Sbjct: 166 TWALADKYN 174


>gi|254434432|ref|ZP_05047940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani AFC27]
 gi|205822273|sp|Q3J9J6|MNMA_NITOC RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|207090765|gb|EDZ68036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitrosococcus oceani AFC27]
          Length = 367

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 57/188 (30%), Gaps = 24/188 (12%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-------ISVDHCLRETAKD--- 68
              ++V +SGG DS    + L       S   +K           +V    RE A+    
Sbjct: 3   KPKVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVDFADESECTVA-QDREDAQAVTS 61

Query: 69  -------EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINAT 120
                  E  +  +   R  + H  +                RE ++    +HA  +  T
Sbjct: 62  LLGISFHEANFAMEYWDR--VFHYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNT 119

Query: 121 LIMTAHTFD-DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           LI T H    DQ E    R  +   +       +       L+  +  P     +  +R 
Sbjct: 120 LIATGHYARIDQKEGR-YRLLKGRDKNKDQSYFLYTLGQKQLSHTLF-PLGELEKPQVRR 177

Query: 180 FLLQRNIS 187
             +Q  + 
Sbjct: 178 IAIQARLP 185


>gi|224533363|ref|ZP_03673957.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
 gi|224513528|gb|EEF83885.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a]
          Length = 355

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   +    S+     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYRIIKKGYSNIKCYYLKIWV--------EDELSYIGNCPWQEDL 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------------KPQTGLMAAAREARYALISEH 113
            YV  +C++  + + +++++                    P   +    R    A   + 
Sbjct: 54  NYVEAICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKI 113

Query: 114 AKTINATLIMTAHTFDDQL-ET-VYMRSQRDYAE-KGMGLSGMCDTILYDLNLWISRPFL 170
                  L++T H    Q+ E+   ++  +D  + +   LS +    +      +  P  
Sbjct: 114 --NSQYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQMSK----LYFPLG 167

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R      N+ 
Sbjct: 168 TLLKSEVRQIAKNINLP 184


>gi|20808849|ref|NP_624020.1| argininosuccinate synthase [Thermoanaerobacter tengcongensis MB4]
 gi|24211498|sp|Q8R7C2|ASSY_THETN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|20517502|gb|AAM25624.1| Argininosuccinate synthase [Thermoanaerobacter tengcongensis MB4]
          Length = 410

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 55/197 (27%)

Query: 16  LVYPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------- 65
           ++    +++A SGG D S+        +   +   + +  A+ VD   RE          
Sbjct: 1   MLKGEKVVLAYSGGLDTSV-------IIPWLKENYECEIIAVCVDVGQREDLRYIKDKAL 53

Query: 66  ---------AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-AREARYALISEHAK 115
                       +  +V D      I  ++ +    + +  L  + AR      + E A 
Sbjct: 54  ASGASKVYIEDVKEEFVKDY-----IFPTLKAGAIYEGKYLLGTSMARPLIAKKLVEIAH 108

Query: 116 TINATLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC- 172
              A  I    T   +DQ+                           D ++ I  P+    
Sbjct: 109 KEGAKAIAHGATGKGNDQV------------------RFEVSIRALDPSIKIIAPWRIWE 150

Query: 173 --RREDIRSFLLQRNIS 187
              RED   +  ++ I 
Sbjct: 151 LKSREDEIEYAKKKGIP 167


>gi|317505473|ref|ZP_07963391.1| transcription regulator ExsB [Prevotella salivae DSM 15606]
 gi|315663386|gb|EFV03135.1| transcription regulator ExsB [Prevotella salivae DSM 15606]
          Length = 217

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 39/188 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           VSGG DS+ LL             +I    IS D+        E+ +    C RL I H 
Sbjct: 8   VSGGMDSITLLY--------DKKDEIALG-ISFDYG-SNHNAKEIPFAEMHCKRLGIKHI 57

Query: 86  VVSWK---NSKPQTGLMAAAR--EARYA------------------LISEHAKTINATLI 122
            ++          + L  A    E  YA                  +    A++     +
Sbjct: 58  TINLDFMHQYFKSSLLQGAEAIPEGHYADENMKSTVVPFRNGIMLSIAIGIAESNQLKKV 117

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + A+   D          R    + +  +    T +   N+ +  P+    + DI     
Sbjct: 118 LIANHGGDHT---IYPDCRPQFIQAIDAAANAGTFV---NVRVEAPYTNITKGDIARIGK 171

Query: 183 QRNISWCE 190
           +  + + E
Sbjct: 172 RLGLDYTE 179


>gi|315425346|dbj|BAJ47012.1| NH(3)-dependent NAD(+) synthetase [Candidatus Caldiarchaeum
           subterraneum]
          Length = 278

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 32/173 (18%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLS-DRSFGKIKFSAISVDHCLRETAKDEVRYV 73
            L   + +++ +SGG DS  +       +  ++  G I  +  +           +V   
Sbjct: 35  RLSGASGLVLGLSGGVDSSVVAALCARAVPGEKILGLIMPTGFT--------PAQDVADA 86

Query: 74  SDVCSRLRIAHS------VVSWKNSKPQTGLMAAAREARYA---------LISEHAKTIN 118
             +  +L I+        +V     +   G+        YA         L+  HA   N
Sbjct: 87  QALAEKLGISTRHIPIDPIVQRYAEQLGVGMDETGARMAYANLRARIRMTLLYFHANLQN 146

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKG---MGLSGMCDTILYDLNLWISRP 168
             ++ T     D+ E + +     Y + G   + + G+  + +  L L +  P
Sbjct: 147 MLVVGTG----DRSE-ILLGYYTKYGDGGVDILPIGGLYKSQVRRLGLALGLP 194


>gi|295115772|emb|CBL36619.1| argininosuccinate synthase [butyrate-producing bacterium SM4/1]
          Length = 409

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 56/202 (27%), Gaps = 39/202 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------------HCLRET 65
              +++A SGG D+         +   +     +     +D               L   
Sbjct: 2   KEKVILAYSGGLDTTA------IIPWLKEHFDYEVICCCIDCGQGEELTGLEERAKLSGA 55

Query: 66  AKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +K      V D C    +                 + AR      + E A+   A+ I  
Sbjct: 56  SKLYVEDIVDDFCDNYIVPCVQAGAVYENKYLLGTSMARPGIAKKLVEIARKEGASAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+     R +         L  +    + D+       +    R+D   +  
Sbjct: 116 GATGKGNDQI-----RFELGIKALAPDLKIIAPWRMTDV-------WTMQSRQDEIDYCK 163

Query: 183 QRNISWCED-PSNTDDRFERVR 203
              I    D P + D  + R R
Sbjct: 164 AHGI----DLPFSADSSYSRDR 181


>gi|260593106|ref|ZP_05858564.1| ExsB protein [Prevotella veroralis F0319]
 gi|260534992|gb|EEX17609.1| ExsB protein [Prevotella veroralis F0319]
          Length = 217

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          VSGG DS+ LL      ++          AIS D+  +   K E+ Y    C +L I H 
Sbjct: 8  VSGGLDSITLLYDKAETIAL---------AISFDYG-QNHGKKELPYAEYHCQKLGIPHI 57

Query: 86 VVS 88
           + 
Sbjct: 58 TIP 60


>gi|85709640|ref|ZP_01040705.1| ExsB [Erythrobacter sp. NAP1]
 gi|85688350|gb|EAQ28354.1| ExsB [Erythrobacter sp. NAP1]
          Length = 232

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
              P  +++ +SGG DSM          +          A+++D+  R   + E+    
Sbjct: 7  QSGRPKAVVL-LSGGLDSMV-------SAATALENGFDVHALTIDYGQRH--RRELAAAR 56

Query: 75 DVCSRLRI 82
           +  +L +
Sbjct: 57 SIAEKLDL 64


>gi|330997044|ref|ZP_08320906.1| phosphoadenosine phosphosulfate reductase family protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329571542|gb|EGG53224.1| phosphoadenosine phosphosulfate reductase family protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 432

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCSR 79
           + V+ SGG DS  LL      L     G+ K     +D+     A  +    YV    + 
Sbjct: 25  VYVSFSGGKDSGVLLNLCIDYLRKHEPGR-KLGVFHMDY----EAQYRQTTEYVEQTMAS 79

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAR 103
               L + H  V +K S   +   +  R
Sbjct: 80  HPDMLEVYHCCVPFKVSTCTSMYQSYWR 107


>gi|303314913|ref|XP_003067465.1| GMP synthase [glutamine-hydrolyzing], putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240107133|gb|EER25320.1| GMP synthase [glutamine-hydrolyzing], putative [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320037830|gb|EFW19767.1| GMP synthase [Coccidioides posadasii str. Silveira]
          Length = 500

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHCLRETAKDEV 70
           +R LV    H+L AVSGG DS      +   + DR      F A+ V + C+R     E 
Sbjct: 184 IRKLVGETDHVLGAVSGGVDSTVASKLMKEAIGDR------FHAVLVNNGCMRLN---EC 234

Query: 71  RYVSD-VCSRLRIAHSVVS-----WKNSKPQTGLMAAAR----------EARYALISEHA 114
             V + +   L I  +VV          K  T      +          EA    I    
Sbjct: 235 EQVHETLGKHLGINLTVVDASKQFLDALKGVTDPERKRKIIGGKFIDVFEAEALKIEAGV 294

Query: 115 KTINA--TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           K   A     +    + D +E++  +      +    + G+   +     L +  P    
Sbjct: 295 KHTGAKVKWFLQGTLYPDVIESLSFKGPSATIKTHHNVGGLPKRMQEGAGLKLIEPLREL 354

Query: 173 RREDIRSFLLQRNI 186
            ++++R    +  I
Sbjct: 355 FKDEVRQLGRELGI 368


>gi|228984515|ref|ZP_04144692.1| hypothetical protein bthur0001_12200 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
 gi|229155007|ref|ZP_04283121.1| hypothetical protein bcere0010_12010 [Bacillus cereus ATCC 4342]
 gi|228628565|gb|EEK85278.1| hypothetical protein bcere0010_12010 [Bacillus cereus ATCC 4342]
 gi|228775218|gb|EEM23607.1| hypothetical protein bthur0001_12200 [Bacillus thuringiensis
          serovar tochigiensis BGSC 4Y1]
          Length = 223

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
            +++   L I H+V+ 
Sbjct: 50 CATEIAKELGIKHTVLD 66


>gi|199594516|gb|ACH90722.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|301318298|gb|ADK67064.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          VR LV    +++ +SGG DS  +   LH  + D      K + + VD
Sbjct: 29 VRELVGDDEVILGLSGGVDSSVVAALLHKAIGD------KLTCVFVD 69


>gi|148285130|ref|YP_001249220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Orientia tsutsugamushi str. Boryong]
 gi|205816896|sp|A5CFJ6|MNMA_ORITB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|146740569|emb|CAM81183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Orientia tsutsugamushi str. Boryong]
          Length = 369

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 76/208 (36%), Gaps = 39/208 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETA------KDEV 70
           A I+VA+SGG DS  +   L     +     ++      +H     R+ A        + 
Sbjct: 11  ATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLY----NHDTAINRKGACCAGQDIYDA 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHA 114
           ++V++   +L+I H V+++K+   ++ +                    +  ++  +   A
Sbjct: 67  KFVAN---QLQIPHYVLNYKDKFKESVIDNFIESYINGETPLPCVQCNQSVKFHDLLNFA 123

Query: 115 KTINATLIMTAH--TFDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           K + A  ++T H     D    +   ++     ++   L     + L     ++  P   
Sbjct: 124 KDLQADALVTGHYVRRIDTANGIELHKAVDSKKDQSYFLFATTKSQLQ----YLHFPLGN 179

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRF 199
             +++ R    +  +   + P + D  F
Sbjct: 180 MTKDETRYHANRYGLHIADKPDSQDICF 207


>gi|71892299|ref|YP_278033.1| GMP synthase [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|91206795|sp|Q492E5|GUAA_BLOPB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71796405|gb|AAZ41156.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 525

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 23/183 (12%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           V    +++  SGG DS+   + L      R     +F  I +D+ L   +  E   + + 
Sbjct: 225 VGNDKVVLGFSGGIDSLVTALLL------RRAIGHQFICIYIDNGL--LSNYEFDRIKNF 276

Query: 77  CS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           C+    L I +     +        + P+       R        +    +    +    
Sbjct: 277 CALNCNLDIIYLSQEQRFFNALIGVNDPEKKRKIIGRVFTEVFEEQIRNLVAVKWLAQGT 336

Query: 127 TFDDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            + D +E+ V + S ++  +    + G C       ++ +  P     ++++RS  L   
Sbjct: 337 IYSDVIESGVSLSSFKNVIKSHHNVGGFCGI----TDIQLLEPIRNLFKDEVRSIGLDLG 392

Query: 186 ISW 188
           I +
Sbjct: 393 IPY 395


>gi|307610418|emb|CBW99988.1| hypothetical protein LPW_17451 [Legionella pneumophila 130b]
          Length = 525

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 22/187 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + +      +   + VD   LR     E  
Sbjct: 220 IREQVGTEKVLLGLSGGVDSSVVAALLHRAIGE------QLVCVFVDTGLLRLN---EAE 270

Query: 72  YVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAA----REARYALISEHAKTINATL 121
            V       + I    V+ ++      K  T          R        E  K  +   
Sbjct: 271 QVLSMFGRHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEVFDEEAQKLADIKW 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    +  + A   +        +   LNL +  P     ++++R   
Sbjct: 331 LAQGTIYPDVIESA--ATSTNDAAVVIKSHHNVGGLPDTLNLKLLEPIRELFKDEVRQVG 388

Query: 182 LQRNISW 188
           L+  +  
Sbjct: 389 LELGLPH 395


>gi|294791818|ref|ZP_06756966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 6_1_27]
 gi|294457048|gb|EFG25410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 6_1_27]
          Length = 363

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 38/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY----VSDVC 77
           I VA+SGG DS   L A   +        I             T  DEV         +C
Sbjct: 15  IAVAMSGGVDSS--LTAAMLLKQGYKVFGITLWLWV-----SGTPYDEVPLAVTDAKKMC 67

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINATL 121
             L I H V+  ++   +  +    +E  Y                 L+   A  + AT 
Sbjct: 68  DFLGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATH 127

Query: 122 IMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRRE 175
           ++T H    +   +T      +               ++Y++N  I      P     + 
Sbjct: 128 MVTGHYAQVNYNEKTGLYELHKGVDPT-----KDQSYVMYNMNQRILSHLMFPLGGQCKT 182

Query: 176 DIRSFLLQRNIS 187
           + R    + ++ 
Sbjct: 183 ETRKLAAEYDLP 194


>gi|294793679|ref|ZP_06758816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 3_1_44]
 gi|294455249|gb|EFG23621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Veillonella sp. 3_1_44]
          Length = 363

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 38/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY----VSDVC 77
           I VA+SGG DS   L A   +        I             T  DEV         +C
Sbjct: 15  IAVAMSGGVDSS--LTAAMLLKQGYKVFGITLWLWV-----SGTPYDEVPLAVTDAKKMC 67

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINATL 121
             L I H V+  ++   +  +    +E  Y                 L+   A  + AT 
Sbjct: 68  DFLGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATH 127

Query: 122 IMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRRE 175
           ++T H    +   +T      +               ++Y++N  I      P     + 
Sbjct: 128 MVTGHYAQVNYNEKTGLYELHKGVDPT-----KDQSYVMYNMNQRILSHLMFPLGGQCKT 182

Query: 176 DIRSFLLQRNIS 187
           + R    + ++ 
Sbjct: 183 ETRKLAAEYDLP 194


>gi|111018263|ref|YP_701235.1| sulfate adenylyltransferase subunit 2 [Rhodococcus jostii RHA1]
 gi|110817793|gb|ABG93077.1| sulfate adenylyltransferase small subunit [Rhodococcus jostii RHA1]
          Length = 317

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS  LL      +       + F+ + VD  H L+E        VS    RL +A
Sbjct: 51  FSGGKDSTVLLHL---AIKAFWPAPLPFALLHVDTGHNLQEVLDFRDHVVSKYNLRLHVA 107


>gi|330830003|ref|YP_004392955.1| putative (Aluminum) resistance protein with adenine nucleotide
           alpha hydrolase domain [Aeromonas veronii B565]
 gi|328805139|gb|AEB50338.1| Putative (Aluminum) resistance protein with adenine nucleotide
           alpha hydrolase domain [Aeromonas veronii B565]
          Length = 235

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +  AI+ D+  R   ++E+     + S L
Sbjct: 5   VVV-FSGGQDSTTCLVQALARYD--------EVHAITFDYGQRH--REEIDTARRLGSAL 53

Query: 81  RIAHSVVSWKNSKPQTGLMAAARE 104
            IA   V       +  + A  R+
Sbjct: 54  GIAAHKVMDVTLLNELAVSALTRD 77


>gi|291166309|gb|EFE28355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Filifactor alocis ATCC 35896]
          Length = 371

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 51/190 (26%), Gaps = 32/190 (16%)

Query: 20  AHILVAVSGGSDSMGLLIALHS-------VLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
             +++ +SGG DS    + L         +       K +    +        A  +   
Sbjct: 3   KKVILGMSGGVDSSVSALLLKQQGYEVVGLFMKNWDEKDEGGVCT--------ATQDYED 54

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEHAKT 116
           V  V  +L I    V+++                  R          E ++    ++A  
Sbjct: 55  VMRVAGQLEIPFYTVNFEKEYWDRVFSYFLNEYEHGRTPNPDVMCNQEIKFNAFLDYALK 114

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           + A  I   H      +      +R           +       L+  I  P     + +
Sbjct: 115 LEADYIAMGHYAGVLKKNGRYYLRRGKDANKDQSYFLSRITEEALSKTIF-PIADLEKSE 173

Query: 177 IRSFLLQRNI 186
           +R    +  +
Sbjct: 174 VRELAEKYRL 183


>gi|261405279|ref|YP_003241520.1| exsB protein [Paenibacillus sp. Y412MC10]
 gi|261281742|gb|ACX63713.1| exsB protein [Paenibacillus sp. Y412MC10]
          Length = 225

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 63/208 (30%), Gaps = 56/208 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ++V  SGG DS   L       ++          ++ D+  R   K E+   + 
Sbjct: 2   LKNEKAVVV-FSGGQDSTTCLFWAKERFAE-------VETVTFDYGQRH--KLEIECAAQ 51

Query: 76  VCSRLRIAHSVVS-------WKNSKPQTGLMAA-----------AREARY-ALISEHAKT 116
           +     +  +V+          N+  ++ +  A            R   + +  +  AK 
Sbjct: 52  IAKEQGVKQTVLDMSLLNQLAPNALTRSDIEIAEGDGLPTTFVDGRNLLFLSFAAVLAKG 111

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------IS 166
           + A  ++T        ET              G     D+ +  LN+           I 
Sbjct: 112 VGAKHLITG-----VCET-----------DFSGYPDCRDSFIKSLNVTLNLAMDYPFVIH 155

Query: 167 RPFLRCRREDIRSFLLQRN-ISWCEDPS 193
            P +   + +      Q N + +  D +
Sbjct: 156 TPLMWLDKSETWELADQMNALEYIRDHT 183


>gi|189039057|sp|A4W7B5|QUEC_ENT38 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
          Length = 231

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ ALH           +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLIQALHQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|163800818|ref|ZP_02194718.1| exsB protein [Vibrio sp. AND4]
 gi|159175167|gb|EDP59964.1| exsB protein [Vibrio sp. AND4]
          Length = 232

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     V   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAEKVAQDL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|91204109|emb|CAJ71762.1| strongly similar to GMP synthase (glutamine-hydrolyzing)
           [Candidatus Kuenenia stuttgartiensis]
          Length = 516

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 21/194 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S IE     +   V    ++  +SGG DS      +H  + +R       S I VD+  L
Sbjct: 203 SFIEKSVNDINRQVGNGRVVCGLSGGVDSAVTAALIHKAIGNR------LSCIFVDNGLL 256

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEH 113
           R    +EV  V            VV  ++         S P+        E      +E 
Sbjct: 257 RNFEAEEV--VKTFKENFSADLHVVRAQDRFLGKLKGVSDPEKKRKIIGHEFIKVFKNEA 314

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +   +     + D +E++            +        +  +L   +  P     
Sbjct: 315 QKISDVQFLAQGTLYPDVIESI---PAHGGPTVTIKSHHNVGGLPEELGFELVEPLRFLF 371

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 372 KDEVRKIGEELGLP 385


>gi|16801260|ref|NP_471528.1| argininosuccinate synthase [Listeria innocua Clip11262]
 gi|21263434|sp|Q929S9|ASSY_LISIN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|16414708|emb|CAC97424.1| argG [Listeria innocua Clip11262]
          Length = 404

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 47/193 (24%)

Query: 19  PAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRETA- 66
              I++A SGG D S+           ++     V   ++   IK  AI+V       + 
Sbjct: 3   KEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAITV-----GASA 57

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                 +  +  +      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 58  SYTIDAKEEFAENFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + NI    D
Sbjct: 156 NYAKEHNIPVPID 168


>gi|134296651|ref|YP_001120386.1| sulfate adenylyltransferase subunit 2 [Burkholderia vietnamiensis
           G4]
 gi|134139808|gb|ABO55551.1| sulfate adenylyltransferase subunit 2 [Burkholderia vietnamiensis
           G4]
          Length = 320

 Score = 41.8 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L        L       + F  + +D  H   E      R    + + L 
Sbjct: 48  FSGGKDSVVVLHLALKAFGLGANRKTTLPFPLVHIDTGHNYEEVIDFRDRRAQQLGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K           +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVVLRRETDSRNAAQAVTLLETIEQHGYTALIGGARRD 156


>gi|332296999|ref|YP_004438921.1| PP-loop domain protein [Treponema brennaborense DSM 12168]
 gi|332180102|gb|AEE15790.1| PP-loop domain protein [Treponema brennaborense DSM 12168]
          Length = 439

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
          +I VA SGG DS  LL  L       +    +     
Sbjct: 27 NIFVAFSGGKDSALLLHLLMDYKKKHNLST-EIGVFH 62


>gi|242022950|ref|XP_002431900.1| cancer-associated gene protein, putative [Pediculus humanus
           corporis]
 gi|212517241|gb|EEB19162.1| cancer-associated gene protein, putative [Pediculus humanus
           corporis]
          Length = 95

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 123 MTAHTFDDQLETVYMRSQRDYAEK 146
            T H  DD  ETV M   R    +
Sbjct: 60  ATGHNADDIAETVLMNILRGDLAR 83


>gi|91782173|ref|YP_557379.1| sulfate adenylyltransferase subunit 2 [Burkholderia xenovorans
           LB400]
 gi|91686127|gb|ABE29327.1| sulfate adenylyltransferase subunit 2 [Burkholderia xenovorans
           LB400]
          Length = 320

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L                + F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLHLALKAFGIGANRKTVLPFPLVHIDTGHNYEEVIDFRDRRAKEIGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K    +      +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVRLRRETDSRNAAQAVTLLETIEEYGYTALIGGARRD 156


>gi|15922650|ref|NP_378319.1| succinoglycan biosynthesis regulator [Sulfolobus tokodaii str. 7]
 gi|74573079|sp|Q96Y49|QUEC2_SULTO RecName: Full=7-cyano-7-deazaguanine synthase 2; AltName:
           Full=7-cyano-7-carbaguanine synthase 2; AltName:
           Full=Archaeosine biosynthesis protein queC 2; AltName:
           Full=PreQ(0) synthase 2
 gi|15623440|dbj|BAB67428.1| 460aa long hypothetical succinoglycan biosynthesis regulator
           [Sulfolobus tokodaii str. 7]
          Length = 460

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 34/129 (26%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           +++A SGG DS      L            + + +  ++   +  + E   V  +   L+
Sbjct: 242 LVIA-SGGLDSTVAATYLLR-------QGYEITLLHFNYH-HKAEEREREAVKKIAEYLQ 292

Query: 82  IAHSVVS-------------------WKNSKPQTGLMAA-----AREAR-YALISEHAKT 116
           +    +                     K+   + G   A     AR    Y++    A+ 
Sbjct: 293 VPLIEIDTDLFKIIGHTTLLKGGGEIVKDRLGEEGAEFAHEWVPARNLIFYSVALALAEA 352

Query: 117 INATLIMTA 125
                I + 
Sbjct: 353 YGYDAIASG 361


>gi|301318270|gb|ADK67050.1| GMP synthase [Stenotrophomonas rhizophila]
 gi|301318304|gb|ADK67067.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          VR LV    +++ +SGG DS  +   LH  + D      K + + VD
Sbjct: 29 VRELVGDDEVILGLSGGVDSSVVAALLHKAIGD------KLTCVFVD 69


>gi|199594470|gb|ACH90699.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594508|gb|ACH90718.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|199594518|gb|ACH90723.1| glutamine-hydrolyzing GMP synthase [Stenotrophomonas maltophilia]
 gi|301318306|gb|ADK67068.1| GMP synthase [Stenotrophomonas maltophilia]
          Length = 184

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)

Query: 13 VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          VR LV    +++ +SGG DS  +   LH  + D      K + + VD
Sbjct: 29 VRELVGDDEVILGLSGGVDSSVVAALLHKAIGD------KLTCVFVD 69


>gi|118577168|ref|YP_876911.1| GMP synthase, PP-ATPase domain/subunit [Cenarchaeum symbiosum A]
 gi|118195689|gb|ABK78607.1| GMP synthase, PP-ATPase domain/subunit [Cenarchaeum symbiosum A]
          Length = 507

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 36/186 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRY------ 72
            +IL  VSGG DS    + +H  + DR         + VD+  LR   + EV        
Sbjct: 211 GNILCGVSGGIDSTVTALLIHKAVGDR------LKCVFVDNGLLRHNEEAEVERIFKEEF 264

Query: 73  ---------VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-ATLI 122
                          +L+    +   +  +   G   A       + SE+A+       +
Sbjct: 265 GMRFTALYAAERFLEKLK---GITDPEEKRKVVGGEFA------DVFSEYAEKNGPFRWL 315

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+             +        +   L L I  P     ++++R    
Sbjct: 316 AQGTLYPDVVES----GATGGPAAVIKSHHNVGGLPDRLGLEILEPLRELYKDEVRKIAA 371

Query: 183 QRNISW 188
           +  +  
Sbjct: 372 RLGVPP 377


>gi|91200058|emb|CAJ73100.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 272

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 62/200 (31%), Gaps = 42/200 (21%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             +  +R +  +L     ++VA SGG DS  +      VL  ++       A++     R
Sbjct: 8   EKLNKLRNYAEAL---ESVVVAFSGGVDSSLVAKVCFDVLGGKAM------AVTA----R 54

Query: 64  ETA--KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAK 115
                  E    + +   + I+H  +          ++  T      +   +  + + A+
Sbjct: 55  SETYPAFEYEEATKIAKEIGISHMTIHTSELNIKGFAENPTNRCYFCKSELFGKLKDIAR 114

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCR 173
                 ++    FDD  E                       +     L +  P   L  R
Sbjct: 115 AQGFKNVVDGANFDDTSE-------------------HRPGLEAAKELSVRSPLKDLGFR 155

Query: 174 REDIRSFLLQRNISWCEDPS 193
           + DIR       +S  + PS
Sbjct: 156 KSDIREISKYLLLSNWDKPS 175


>gi|16081948|ref|NP_394358.1| NAD synthetase [Thermoplasma acidophilum DSM 1728]
 gi|25090797|sp|Q9HJR8|NADE_THEAC RecName: Full=NH(3)-dependent NAD(+) synthetase
 gi|10640176|emb|CAC12028.1| NAD(+) synthase related protein [Thermoplasma acidophilum]
          Length = 241

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 2  FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DH 60
          ++  IE +  F+R ++   + ++ +SGG DS   L  L      RS  K +   + + D 
Sbjct: 4  YMQEIERISEFLRKVLQGKNAVIGISGGIDSSVTLALL-----TRSIPKERIIPVFMPDR 58

Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90
            ++   D+   V  +  +L + +  V   
Sbjct: 59 NTQQADYDD---VQKLTQKLGLTYREVRID 85


>gi|332299754|ref|YP_004441675.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica DSM 20707]
 gi|332176817|gb|AEE12507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica DSM 20707]
          Length = 379

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 58/206 (28%), Gaps = 52/206 (25%)

Query: 15  SLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------- 65
           +L   + I L+A SGG DS   +  L           I+         +++         
Sbjct: 11  ALPRDSRIALLA-SGGVDSSVAMHLLVEAGFRPDLYYIRI-------GMQDEDGGYLDCP 62

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL---------------I 110
           A++++  V+ +  R  +   V+          +       R  L                
Sbjct: 63  AEEDIELVTLLARRYDLHLEVIDLHKLYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFGA 122

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILYD 160
            E     +   I T H            + R  AE    L    D           I + 
Sbjct: 123 FEERSGSSYDYIATGH----------YATIRKTAEGLTFLGTSPDPVKDQTDFLAQIGFR 172

Query: 161 LNLWISRPFLRCRREDIRSFLLQRNI 186
               +  P     +E++R   L+ ++
Sbjct: 173 QMERLLFPIGHLPKEEVRRIALEAHL 198


>gi|285018357|ref|YP_003376068.1| gmp synthase (glutamine amidotransferase) protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473575|emb|CBA16078.1| probable gmp synthase (glutamine amidotransferase) protein
           [Xanthomonas albilineans]
          Length = 521

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR+ V    +++ +SGG DS  +   LH  + D      K + + VD   LR +     +
Sbjct: 217 VRAQVGDDEVILGLSGGVDSSVVAALLHKAIGD------KLTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKP------QTGLMAAAREARYALISEHA-----KTINA 119
                    + +   V+    ++             A R+    L  +       K  NA
Sbjct: 271 AM---FAEHMGVK--VIRVNAAERYFNALAGISDPEAKRKVIGNLFVDIFDEESNKLHNA 325

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +   + L +  P     ++++R 
Sbjct: 326 RWLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRR 382

Query: 180 FLLQRNIS 187
             ++  + 
Sbjct: 383 LGVELGLP 390


>gi|288930595|ref|YP_003434655.1| argininosuccinate synthase [Ferroglobus placidus DSM 10642]
 gi|288892843|gb|ADC64380.1| argininosuccinate synthase [Ferroglobus placidus DSM 10642]
          Length = 395

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 57/199 (28%), Gaps = 53/199 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           + +++  SGG D+   +  L        +G  +   ++VD   +    +E++   +   +
Sbjct: 2   SKVVLCYSGGLDTTVCIPLLRE-----KYGFEEVVTVTVDIG-QPE--EELKKAEERGKK 53

Query: 80  LRIAHSVVSWKNSKPQTGLM---------------AAAREARYALISEHAKTINATLIMT 124
               H  V  K    +                   A AR      + E AK  NA  I  
Sbjct: 54  YADKHYTVDAKEDFVKALFQLIKANGEYEGYVLGTALARPIIAEKVVEIAKKENADAI-- 111

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMC-DTILYDLNLWISRPF--LRCRREDIRSFL 181
           AH                    G G   +  D I +     +  P   L   RE    + 
Sbjct: 112 AH-----------------GATGKGNDQLRFDNIFFQHGFKVVAPMRELNLTREWEIEYA 154

Query: 182 LQRNI--------SWCEDP 192
            +  I         W  D 
Sbjct: 155 KKHGIDIPVTKDKPWSIDE 173


>gi|269955524|ref|YP_003325313.1| sulfate adenylyltransferase small subunit [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304205|gb|ACZ29755.1| sulfate adenylyltransferase, small subunit [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 315

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V  L  P  +L+  SGG DSM +L       +      + F  + VD  H 
Sbjct: 27  EAIHIIREVVAELERP--VLL-FSGGKDSMVMLHLAVKAFAP---APVPFPLLHVDTGHN 80

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
                 + + +   V  RLR+   V   +       L   A
Sbjct: 81  F----PEVLAFRDRVADRLRLRLEVARVQEWIDDGRLRERA 117


>gi|332534089|ref|ZP_08409938.1| queuosine biosynthesis QueC ATPase [Pseudoalteromonas
          haloplanktis ANT/505]
 gi|332036526|gb|EGI72994.1| queuosine biosynthesis QueC ATPase [Pseudoalteromonas
          haloplanktis ANT/505]
          Length = 218

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 21 HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++V  SGG DS   L  AL               A+S D+  R     E++  + VC +
Sbjct: 4  KVVVIYSGGMDSFTVLNKALQQ--------GHDVYALSFDYGQRHV--KELKVAASVCEK 53

Query: 80 LRIAHSVVSWKN 91
          L + H +V    
Sbjct: 54 LNVPHKIVDISA 65


>gi|326798455|ref|YP_004316274.1| argininosuccinate synthase [Sphingobacterium sp. 21]
 gi|326549219|gb|ADZ77604.1| argininosuccinate synthase [Sphingobacterium sp. 21]
          Length = 395

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 52/194 (26%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              +++A SGG D S   +     +        ++  ++ V+      ++DE++ +    
Sbjct: 2   KKKVVLAFSGGLDTSFCAIYLSKDM-------GLEVHSVIVNTG--GFSEDELKQIETRA 52

Query: 78  SRLRIA-HSVVSWKNSKPQTGLM-----------------AAAREARYALISEHAKTINA 119
             L +A H+ V    +     +                  +A R  +   I+ + K I+A
Sbjct: 53  YELGVASHATVDETQNYYNESIKYLIYGNVLKNATYPLSVSAERVCQATAIANYVKKIDA 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRR 174
             +  AH                    G G   +   +++++   ++ I  P   L+  R
Sbjct: 113 NFV--AH-----------------GSTGAGNDQVRFDMIFNILIPDVEIITPIRDLKLSR 153

Query: 175 EDIRSFLLQRNISW 188
           E    +L    +++
Sbjct: 154 ESEIDYLHNHGVTY 167


>gi|315126984|ref|YP_004068987.1| regulator protein [Pseudoalteromonas sp. SM9913]
 gi|315015498|gb|ADT68836.1| regulator protein [Pseudoalteromonas sp. SM9913]
          Length = 218

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 21 HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
           ++V  SGG DS   L  AL               A+S D+  R     E++  + VC +
Sbjct: 4  KVVVIYSGGMDSFTVLNKALQQ--------GHDVYALSFDYGQRHV--KELKVAASVCEK 53

Query: 80 LRIAHSVVSWKN 91
          L + H +V    
Sbjct: 54 LNVPHKIVDISA 65


>gi|238898980|ref|YP_002924662.1| GMP synthetase (glutamine aminotransferase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|259647684|sp|C4K7H1|GUAA_HAMD5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|229466740|gb|ACQ68514.1| GMP synthetase (glutamine aminotransferase) [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 525

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 19/194 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
            + I+     ++  +    +++ +SGG DS    I LH  +          + + VD+  
Sbjct: 211 RNIIDQTLSELKDQIGDDQVILGLSGGVDSAVTAILLHRAIGK------SLTCVFVDNGL 264

Query: 62  LR-ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA-------AAREARYALISEH 113
           LR   ++  +    D    L I H   + +      G+           R        + 
Sbjct: 265 LRLNESQQVLNIFQDQ-FGLNIIHVSAANRFMNALKGIQDPEKKRKVIGRVFVDIFDEQA 323

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           AK      +     + D +E+    + + +  K          +  ++ L +  P     
Sbjct: 324 AKQKGVKWLAQGTIYTDLVESAASGTAKSHLIKS---HHNVAGLPKEMKLGLIEPLKELF 380

Query: 174 REDIRSFLLQRNIS 187
           ++++R   L+  + 
Sbjct: 381 KDEVRQLGLELGLP 394


>gi|160947468|ref|ZP_02094635.1| hypothetical protein PEPMIC_01402 [Parvimonas micra ATCC 33270]
 gi|158446602|gb|EDP23597.1| hypothetical protein PEPMIC_01402 [Parvimonas micra ATCC 33270]
          Length = 510

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V    +L+A+SGG DS      L   +        + + + VD  L R+   DEV 
Sbjct: 209 IKQTVGDKKVLLALSGGVDSSVCASLLSKAI------GSQLTCVFVDTGLMRKNEGDEVE 262

Query: 72  YV 73
             
Sbjct: 263 EA 264


>gi|78776909|ref|YP_393224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas denitrificans DSM 1251]
 gi|123550559|sp|Q30SP2|MNMA_SULDN RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|78497449|gb|ABB43989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 341

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 28/126 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLRETAKDEVRYVSDV 76
             +L+ +SGG DS    + L     +     +K       H      E  +   R  +D 
Sbjct: 3   KKVLLGMSGGVDSTVSAMFLKEEGYEVEGLYMKL------HSNPGYHEIHEARARKAADF 56

Query: 77  CSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKTINAT 120
              L I   V+  +                        A   R  ++  + + A  I A 
Sbjct: 57  ---LGIKLHVIDLQEIFNEKVFKPFVDTYAKGKTPNPCALCNRSLKFGEMLKFAYKIGAD 113

Query: 121 LIMTAH 126
            + T H
Sbjct: 114 FVATGH 119


>gi|222100295|ref|YP_002534863.1| glutamine-dependent NAD(+) synthetase [Thermotoga neapolitana DSM
           4359]
 gi|221572685|gb|ACM23497.1| glutamine-dependent NAD(+) synthetase [Thermotoga neapolitana DSM
           4359]
          Length = 555

 Score = 41.8 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 20/97 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF + +  VR +VR   +   +++ +SGG DS      L +V++  + GK     +    
Sbjct: 277 MFRALVTGVRDYVRKNGFE-KVVIGLSGGMDSS-----LVAVIATEALGKENVKGV---- 326

Query: 61  CL------RETAKDEVRYVSDVCSRLRIAHSVVSWKN 91
            L       +++ ++      +   L I   ++   +
Sbjct: 327 -LMPSMYTSKSSLEDA---QKLAENLGIETFIIPITD 359


>gi|257074525|ref|YP_003162922.1| ExsB family protein [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048746|gb|ACV37931.1| ExsB family protein [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 201

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS+         ++      I   AI++D+  +  A  E+     +C RLRI H 
Sbjct: 7   LSGGMDSIS--------IAWWKHPDI---AITIDYG-QLPAAAEITASQAICRRLRIPHH 54

Query: 86  VVSWKNSKPQTGLMA 100
           V+        +G MA
Sbjct: 55  VLQVDCHSLGSGDMA 69


>gi|255713952|ref|XP_002553258.1| KLTH0D12584p [Lachancea thermotolerans]
 gi|238934638|emb|CAR22820.1| KLTH0D12584p [Lachancea thermotolerans]
          Length = 525

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 30/202 (14%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I++    +R LV P A ++ AVSGG DS      +   + +R      F AI VD+  
Sbjct: 207 NFIDTEIKRIRELVGPTAEVIGAVSGGVDSTVAAKLMTEAIGER------FHAILVDNGV 260

Query: 62  LRETAKDEVRYVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAAREA---------R 106
           LR     E   V   +   L+I  +VV   +      K  T      +           R
Sbjct: 261 LRLN---EAANVKKTLGEGLKINLTVVDAADEFLDKLKGVTDPEKKRKIIGNTFIHVFER 317

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
            A   +         ++    + D +E++  +      +    + G+ +    D+ L + 
Sbjct: 318 EAAKIQPKSGEEIEFLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLE----DMKLKLI 373

Query: 167 RPFLRCRREDIRSFLLQRNISW 188
            P     ++++R       IS 
Sbjct: 374 EPLRELFKDEVRHLGELLGISH 395


>gi|218249186|ref|YP_002375182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi ZS7]
 gi|226704767|sp|B7J2N7|MNMA_BORBZ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|218164374|gb|ACK74435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi ZS7]
          Length = 355

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   ++   S+     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWV--------EDELSYIGNCPWQEDL 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------------KPQTGLMAAAREARYALISEH 113
            YV  +C++  + + +++++                    P   +    R    A   + 
Sbjct: 54  NYVEAICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKI 113

Query: 114 AKTINATLIMTAHTFDDQL-ET-VYMRSQRDYAE-KGMGLSGMCDTILYDLNLWISRPFL 170
                  L++T H    Q+ E+   ++  +D  + +   LS +    +      +  P  
Sbjct: 114 --NSQYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQISK----LYFPLG 167

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R      N+ 
Sbjct: 168 TLLKSEVRQIAKNINLP 184


>gi|194365449|ref|YP_002028059.1| GMP synthase [Stenotrophomonas maltophilia R551-3]
 gi|226739745|sp|B4SSX7|GUAA_STRM5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|194348253|gb|ACF51376.1| GMP synthase, large subunit [Stenotrophomonas maltophilia R551-3]
          Length = 521

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + +      K + + VD   LR +     +
Sbjct: 217 VREQVGDDEVILGLSGGVDSSVVAALLHKAIGE------KLTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTI-----NA 119
                    + +   VV    +              A R+    L  E          NA
Sbjct: 271 AM---FAEHMGVK--VVRVNAADRYFAALEGVSDPEAKRKIIGNLFVEIFDEESNKLKNA 325

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +   + L +  P     ++++R 
Sbjct: 326 KWLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRR 382

Query: 180 FLLQRNIS 187
             ++  + 
Sbjct: 383 LGVELGLP 390


>gi|20808819|ref|NP_623990.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
           [Thermoanaerobacter tengcongensis MB4]
 gi|24638308|sp|Q8R7F0|MNMA2_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|20517470|gb|AAM25594.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase, contains the PP-loop ATPase domain
           [Thermoanaerobacter tengcongensis MB4]
          Length = 364

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 74/245 (30%), Gaps = 64/245 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L     +          I V   + +   +E   V  
Sbjct: 1   MQKNNRVVVGMSGGVDSSVAAYLLKEQGYE---------VIGVTMQIWQDKDEEAVRVEG 51

Query: 74  -----------SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARY 107
                        V +++ I + V+++K+   +                    A  +  Y
Sbjct: 52  GCCSLAAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNK--Y 109

Query: 108 ALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMG-LSGMCDTILY 159
               E  K    I+A  + T H      D++     ++   D ++     L  +  T L 
Sbjct: 110 IKFEELLKRAWMIDAYYVATGHYAIKEYDEERGRYLLKKSVDTSKDQTYVLYNLTQTQLE 169

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPSNTDDRFERVRVRRFV 208
                I  P  + +++ +R       +            +  D  N   +F R   +  +
Sbjct: 170 ----HILFPLGKYKKDKVRELAKNLGLPVASKPDSQEICFVTD--NDYGKFIRENAKEEI 223

Query: 209 RDIDL 213
           +  + 
Sbjct: 224 KPGEF 228


>gi|262306091|gb|ACY45638.1| gln amidotransferase [Polyzonium germanicum]
          Length = 197

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 8  SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETA 66
              +++  V    +L+ +SGG DS      L+  L        +  A+ +D+   R+  
Sbjct: 32 QCTRYIQETVGDNKVLMMLSGGVDSTVCAALLNKALKAD-----QVIALHIDNGFMRKGE 86

Query: 67 KDEVR 71
           +EV 
Sbjct: 87 SEEVA 91


>gi|254242459|ref|ZP_04935781.1| GMP synthase [Pseudomonas aeruginosa 2192]
 gi|126195837|gb|EAZ59900.1| GMP synthase [Pseudomonas aeruginosa 2192]
          Length = 525

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 56/193 (29%), Gaps = 35/193 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETA 66
           VR+ V  + +L+ +SGG DS  +   LH  + D      R    ++              
Sbjct: 221 VRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGDQLTCVVRRQRLLRLH----------EG 270

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-----------AREARYALISEHAK 115
              +         + +   V+         G +A             R        E  K
Sbjct: 271 DQVMAM---FAENMGVK--VIRANAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATK 325

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +   +     + D +E+      +      +        +  D+   +  P     ++
Sbjct: 326 LQDVKFLAQGTIYPDVIES---AGAKTGKAHVIKSHHNVGGLPEDMQFELVEPLRELFKD 382

Query: 176 DIRSFLLQRNISW 188
           ++R   L+  + +
Sbjct: 383 EVRKIGLELGLPY 395


>gi|315022618|gb|EFT35644.1| GMP synthase [Riemerella anatipestifer RA-YM]
 gi|325336907|gb|ADZ13181.1| GMP synthase, PP-ATPase domain/subunit [Riemerella anatipestifer
           RA-GD]
          Length = 509

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 32/191 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  +        + + I VD   LR+    E +
Sbjct: 206 IRQKVGNQKVILGLSGGVDSSVAAVLIHKAI------GSQLTCIFVDTGLLRKN---EAQ 256

Query: 72  YV-SDVCS--RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +  S   L I     S +        S P+        E       E  K   A  
Sbjct: 257 KVMENYGSHFNLNIKLIDASERFLSKLKGVSDPEQKRKIIGSEFVAVFDEESHKIEGAKF 316

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDI 177
           +           T+Y       + KG             +  D+   +  P     ++++
Sbjct: 317 LAQG--------TIYPDVIESQSVKGPSAVIKSHHNVGGLPEDMEFELLEPLRELFKDEV 368

Query: 178 RSFLLQRNISW 188
           R    +  I  
Sbjct: 369 RKVGEELGIPH 379


>gi|228914011|ref|ZP_04077633.1| hypothetical protein bthur0012_12480 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228845616|gb|EEM90645.1| hypothetical protein bthur0012_12480 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 223

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIEQFA--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
              +   L I H+V+ 
Sbjct: 50 CAVKIAKELGIKHTVLD 66


>gi|115475912|ref|NP_001061552.1| Os08g0326600 [Oryza sativa Japonica Group]
 gi|24414065|dbj|BAC22314.1| putative GMP synthetase [Oryza sativa Japonica Group]
 gi|113623521|dbj|BAF23466.1| Os08g0326600 [Oryza sativa Japonica Group]
 gi|215694477|dbj|BAG89422.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 544

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E +R     +    H++ A+SGG DS      +H  + DR         + VD+ L
Sbjct: 225 EEIRTIQSMVGPDEHVICALSGGVDSTVAATLVHKAIGDR------LHCVFVDNGL 274


>gi|220931733|ref|YP_002508641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothermothrix orenii H 168]
 gi|259495830|sp|B8CWH7|MNMA_HALOH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|219993043|gb|ACL69646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Halothermothrix orenii H 168]
          Length = 358

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 35/134 (26%)

Query: 20  AHILVAVSGGSDSMGLLIALH-----------SVLSDRSFGKIKFSAISVDHCLRETAKD 68
             +LVA+SGG DS      L             +  D     +             ++ +
Sbjct: 2   DRVLVAMSGGVDSSVTAALLKEQGYEVIGGTMEIFPDYEQPPLDEGGCC-----SLSSIE 56

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAR----------EARYALISE 112
           + R V      + I H   + K    +            AR          E ++  + +
Sbjct: 57  DARRV---AHHIGIRHYTFNLKKVFEEEVINNFVNEYKNARTPNPCVVCNNEIKFRSLLK 113

Query: 113 HAKTINATLIMTAH 126
            A  ++A  I T H
Sbjct: 114 KALELDADYIATGH 127


>gi|256082831|ref|XP_002577656.1| GMP synthetase [Schistosoma mansoni]
 gi|238662982|emb|CAZ33894.1| GMP synthetase (glutamine-hydrolysing) [Schistosoma mansoni]
          Length = 739

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    IL+ +SGG DS      L      ++    +  A+ +D+  LR+    E  
Sbjct: 206 IREAVGQNKILILLSGGVDSTVCAALLS-----KTLDPSQIIAVHIDNGFLRKN---ESL 257

Query: 72  YVSDVCSRLRIAHSVVS 88
            V +    L I   +++
Sbjct: 258 RVIESLKSLGIKVHLIN 274


>gi|227824500|ref|ZP_03989332.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904999|gb|EEH90917.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 357

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 55/193 (28%), Gaps = 43/193 (22%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---------DEVRYV 73
           L+A+SGG DS      +     +     +K             A           +V   
Sbjct: 4   LIAMSGGVDSSVAAKLMLDQGYECVGCTMKLY-------NNPDAGCSSKTCCSIRDVEDA 56

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAARE----------------ARYALISEHAKTI 117
             V  RL + + V ++ +   +  +   AR                  ++  + E AK +
Sbjct: 57  RSVAVRLGMPYFVFNYMDEFRRDVMETFARSYTLGKTPNPCIDCNKFLKFGALYERAKEL 116

Query: 118 NATLIMTAHT-----FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
               I+T H       +   E   +R++    ++   L  +    L         P    
Sbjct: 117 GCDTIVTGHYARIRKRNGCYE--LLRAKDPKKDQSYVLYNLTQEQLAHTQF----PLGDY 170

Query: 173 RREDIRSFLLQRN 185
            +   R    +  
Sbjct: 171 EKTHTREIAEESG 183


>gi|152990287|ref|YP_001356009.1| glutamine-dependent NAD+ synthetase [Nitratiruptor sp. SB155-2]
 gi|151422148|dbj|BAF69652.1| glutamine-dependent NAD+ synthetase [Nitratiruptor sp. SB155-2]
          Length = 626

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 42/139 (30%), Gaps = 31/139 (22%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA- 66
           ++   V  +     +++ VSGG DS   L+    V             +         + 
Sbjct: 324 ALARRVMHIAKETKLVIGVSGGLDSTLALLVCAKVCEILQKPYSDIVGV---------SM 374

Query: 67  ------KDEVRYVSDVCSRLRIAHSVV--------SWKNSKPQTGLM------AAAREAR 106
                     +    +C  + + +  +         +++      +       A ARE R
Sbjct: 375 PGFGTTDATKKSARKLCEAIGVTYKQIDITKSVLRHFEDIDHDPDICDVTYENAQARE-R 433

Query: 107 YALISEHAKTINATLIMTA 125
             ++ + A  +   +I T 
Sbjct: 434 TQILMDLANEVGGIVIGTG 452


>gi|126133334|ref|XP_001383192.1| GMP synthase [Scheffersomyces stipitis CBS 6054]
 gi|126095017|gb|ABN65163.1| GMP synthase [Scheffersomyces stipitis CBS 6054]
          Length = 528

 Score = 41.8 bits (97), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I++    +R LV P A ++ AVSGG DS      L+  + DR      F AI VD+  
Sbjct: 210 NFIDTEIARIRKLVGPTAEVIGAVSGGVDSTVGAKILNEAIGDR------FHAIYVDNGV 263

Query: 62  LRETAKDEVRYV-SDVCSRLRIAHSVVS 88
           +R+    E   V   +   L I  +VV 
Sbjct: 264 MRKN---ETETVYKTLTEGLGINLTVVD 288


>gi|256810614|ref|YP_003127983.1| NAD+ synthetase [Methanocaldococcus fervens AG86]
 gi|256793814|gb|ACV24483.1| NAD+ synthetase [Methanocaldococcus fervens AG86]
          Length = 253

 Score = 41.8 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 16/89 (17%)

Query: 4  SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            IE +  F++  V  A    +++ +SGG DS          L       I         
Sbjct: 3  KVIEKITNFIKEKVEEAKANGVVIGLSGGIDSAVTAYLCVKALGKYRVLGIIM------- 55

Query: 61 CLRETAK---DEVRYVSDVCSRLRIAHSV 86
                     +V +   V   L I +++
Sbjct: 56 ---PEKNTNPKDVEHAKMVAENLGIKYTI 81


>gi|196007190|ref|XP_002113461.1| hypothetical protein TRIADDRAFT_26341 [Trichoplax adhaerens]
 gi|190583865|gb|EDV23935.1| hypothetical protein TRIADDRAFT_26341 [Trichoplax adhaerens]
          Length = 667

 Score = 41.8 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 34/205 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V     LV VSGG DS      LH  L     G  +  A+ +D+   R+   D+V+
Sbjct: 207 IKQKVRDKKALVLVSGGVDSAVCAALLHKAL-----GSDRVIALHIDNGFMRKNESDDVK 261

Query: 72  Y-VSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARY------- 107
             +  +   + I HS   +  S     +M                    E R+       
Sbjct: 262 ISLRKIGLDIEILHSAYHFYTSHTSYPIMLEGIPTRHITDPLVNVYSPEEKRHIIGDTFV 321

Query: 108 ----ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
                 +          ++       D +E+    +  +        +         L  
Sbjct: 322 RVANEYLKNLGIEPQDIVLAQGTLRPDLIESASKEASSEAHVIKTHHNDTDLVRQLRLQN 381

Query: 164 WISRPFLRCRREDIRSFLLQRNISW 188
            I  P     ++++R+  ++  +  
Sbjct: 382 GIIEPLQDFHKDEVRALGIELGLPP 406


>gi|111018519|ref|YP_701491.1| sulfate adenylyltransferase subunit 2 [Rhodococcus jostii RHA1]
 gi|110818049|gb|ABG93333.1| sulfate adenylyltransferase subunit 2 [Rhodococcus jostii RHA1]
          Length = 305

 Score = 41.8 bits (97), Expect = 0.24,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 17/132 (12%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLR 63
           E+V  F   +  +   +L+  SGG DS+ +L              + F+ + VD  H   
Sbjct: 18  EAVHIFREVAATFERPVLL-FSGGKDSVVMLHVAAKAF---WPAPLPFAVMHVDTGHNF- 72

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTI 117
               + + +      RL +   V S ++         +TG  A+    +   +    +  
Sbjct: 73  ---DEVIEFRDRTVDRLDLRMVVSSVQDDIDAGRVSEETGPRASRNRLQTTALLRGIRDN 129

Query: 118 NATLIMTAHTFD 129
               I      D
Sbjct: 130 GFDAIFGGARRD 141


>gi|324518702|gb|ADY47178.1| tRNA-specific 2-thiouridylase 1 [Ascaris suum]
          Length = 382

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 39/150 (26%), Gaps = 51/150 (34%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----------VDHCLRETAKDE 69
             +  A+SGG DS    + L                +           V+ C R   + +
Sbjct: 6   RRVACALSGGVDSAVAALLLKR-------NGFDVVGVYMVNWDQVEEGVNDCPRTKDEAD 58

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQ----TGLMAAAREA------------------RY 107
            R V   C RL I   VV +            L    R                    RY
Sbjct: 59  ARKV---CVRLGIEFHVVDFTREYWNDVFMNMLENYRRGLTVVSDVMCNRIVKFDHLHRY 115

Query: 108 ALISEHAKTINATLIMTAH----TFDDQLE 133
           A      + +    + T H       D LE
Sbjct: 116 AF-----QKLCVDAVATGHFARTNLGDFLE 140


>gi|253579959|ref|ZP_04857227.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848958|gb|EES76920.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 408

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 56/207 (27%), Gaps = 49/207 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------------HCLRET 65
              +++A SGG D+  L      +   +           V+               L   
Sbjct: 2   KEKVVLAYSGGLDTTAL------IPWLKETFDYDVVCCCVNCGQGNELDGLDERAKLSGA 55

Query: 66  AKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +K      V + C    +                 + AR A    + E A+   A  I  
Sbjct: 56  SKLYIEDIVDEFCDDFIVPCVQAGAVYEHKYLLGTSMARPAIAKKLVEIARKEGAVAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC------RRED 176
             T   +DQ+               +G+  +        ++ I  P+          RED
Sbjct: 116 GATGKGNDQI------------RFELGIKALAP------DIKIIAPWRMTDKWTMQSRED 157

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVR 203
             +F     I    D S     + R R
Sbjct: 158 EIAFCKAHGIDLPFDAS---HSYSRDR 181


>gi|150008245|ref|YP_001302988.1| hypothetical protein BDI_1611 [Parabacteroides distasonis ATCC
           8503]
 gi|149936669|gb|ABR43366.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 433

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-VCSR- 79
           + V+ SGG DS  LL      +   + G+ K     +D+ ++ +    + YV     +  
Sbjct: 25  VYVSFSGGKDSGVLLNLCVDYIRRYAPGR-KLGVFHMDYEVQYS--QTIEYVEKVYAANS 81

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
             L I H  V +K     +      R           + +  + +
Sbjct: 82  DILDIYHCCVPFKVQTCTSMFQQYWRPWSEEYRDIWVREMPHSCL 126


>gi|145225479|ref|YP_001136157.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium gilvum PYR-GCK]
 gi|315445832|ref|YP_004078711.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. Spyr1]
 gi|145217965|gb|ABP47369.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium gilvum PYR-GCK]
 gi|315264135|gb|ADU00877.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. Spyr1]
          Length = 522

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 67/197 (34%), Gaps = 27/197 (13%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RET 65
           E++   VR+ +     +  +SGG DS     A+ + L  R+ G  + + + VDH L R  
Sbjct: 205 EALVEQVRNQIGDGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAG 258

Query: 66  AKDEVR--YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHA---- 114
            + +V+  +V+   + L  +  +    +     T          RE   A          
Sbjct: 259 ERAQVQRDFVAATGANLVTVDVADRFLEALSGVTNPEGKRKIIGREFIRAFEGAVRDTVE 318

Query: 115 ----KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
                 +    ++    + D +E+             +        +  DL   +  P  
Sbjct: 319 RSDGSDVPVEFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDDLKFALVEPLR 373

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+   +  + 
Sbjct: 374 LLFKDEVRAVGRELGLP 390


>gi|282850275|ref|ZP_06259654.1| conserved hypothetical protein TIGR00268 [Veillonella parvula ATCC
           17745]
 gi|282579768|gb|EFB85172.1| conserved hypothetical protein TIGR00268 [Veillonella parvula ATCC
           17745]
          Length = 248

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 34/142 (23%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIA------LHSVLSDRSFGKIKFSAI 56
           ++ IE +R F         I +A+SGG DS  L  A      L    + +S    +F   
Sbjct: 1   MNLIEYLRSF-------DKIAIALSGGVDSTYLAYAAKQSGVLCKAYTVKSQFVPQFEL- 52

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREARYALI--- 110
                      ++ + V+++   + I+  ++           +         +Y +    
Sbjct: 53  -----------EDAKKVAEL---IDISLKIIDIDVLEYDDITSNPSNRCYYCKYHVFSTI 98

Query: 111 SEHAKTINATLIMTAHTFDDQL 132
           SEHA+    T++       D +
Sbjct: 99  SEHARRDGFTILCDGTNASDDV 120


>gi|237739593|ref|ZP_04570074.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 2_1_31]
 gi|229423201|gb|EEO38248.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 2_1_31]
          Length = 512

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 72/198 (36%), Gaps = 25/198 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IESTVKQIKETVGNKQVILGLSGGVDSSVAAALINKAIGK------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +       +    V+ +          + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFNMNIKCVNAEERFLSKLAGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D +E+V ++      +    + G+ + + ++    +  P     +
Sbjct: 313 KIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFE----LLEPLRELFK 368

Query: 175 EDIRSFLLQRNIS-WCED 191
           +++R    +  I  +  D
Sbjct: 369 DEVRKVGRELGIPDYMVD 386


>gi|159904232|ref|YP_001551576.1| PP family ATPase [Prochlorococcus marinus str. MIT 9211]
 gi|159889408|gb|ABX09622.1| ATP-utilizing enzymes of the PP-loop superfamily [Prochlorococcus
           marinus str. MIT 9211]
          Length = 288

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 62/202 (30%), Gaps = 44/202 (21%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---AISVD 59
           L  +E +R  ++ +     + +A SGG DS  +       L   +      S   A    
Sbjct: 14  LQQLELLRDAIKQI---GKVCIAYSGGVDSSLIAAIAKEQLGTNALAVTGVSDSLAPH-- 68

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQTG-----LMAAAREARYALISEH 113
             LR+ A           + + I H   ++ +   P           A ++  +  ++  
Sbjct: 69  --LRKEA-------QQQAAWIGIKHTECITNELESPDYNQNPVDRCFACKQELHTHLANI 119

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           A     + ++    FDD                G+  + +           +  P   L+
Sbjct: 120 ASNFKESQVIDGVNFDDL----------GDHRPGIQAARLAG---------VRSPLAELK 160

Query: 172 CRREDIRSFLLQRNISWCEDPS 193
            R+  IR         W + PS
Sbjct: 161 IRKSTIRDISKALGFPWWDKPS 182


>gi|226365929|ref|YP_002783712.1| tRNA-specific 2-thiouridylase MnmA [Rhodococcus opacus B4]
 gi|254811458|sp|C1B1S2|MNMA_RHOOB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|226244419|dbj|BAH54767.1| putative tRNA uridine-sulfurtransferase [Rhodococcus opacus B4]
          Length = 364

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 56/195 (28%), Gaps = 42/195 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------AKD 68
            +L A+SGG DS           +           + +   L               +K+
Sbjct: 2   RVLAAMSGGVDS-------AVAAARAVAAGHDVVGVHLA--LSAEPGTLRTGSRGCCSKE 52

Query: 69  EVRYVSDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISE 112
           +          L I   V               V+   +            + ++A +++
Sbjct: 53  DAGDARRAADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALAD 112

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
            A  +    + T H    QLE   +R   D  +    + G+         ++   P    
Sbjct: 113 RAIALGFDAVATGHYA--QLENGVLRRAVDADKDQSYVLGVLTAEQLSRAMF---PVGDT 167

Query: 173 RREDIRSFLLQRNIS 187
            ++ IR    +R ++
Sbjct: 168 PKDRIREEAAERGLA 182


>gi|289207540|ref|YP_003459606.1| argininosuccinate synthase [Thioalkalivibrio sp. K90mix]
 gi|288943171|gb|ADC70870.1| argininosuccinate synthase [Thioalkalivibrio sp. K90mix]
          Length = 407

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 59/185 (31%), Gaps = 39/185 (21%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-----AKDEVRYV 73
           + +++A SGG D S+     L  +        I F+A   D    E      AK E   V
Sbjct: 6   SRVVLAYSGGLDTSV----ILKWLEDQYGCEVITFTA---DLGQGEEVEPARAKAEALGV 58

Query: 74  SD-VCSRLR---IAHSVVSWKNSKPQTGLM-----AAAREARYALISEHAKTINATLIMT 124
                  LR   +   V     +            + AR      + E A+   A  I  
Sbjct: 59  KQIYIEDLRETFVRDYVFPMFRANTIYEGEYLLGTSIARPLIARRMVEIAEETGADAIAH 118

Query: 125 AHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+     R +        G+  +     +DLN           RE + ++  
Sbjct: 119 GATGKGNDQV-----RFELGAYALKPGIRVIAPWREWDLN----------SRERLMAYAE 163

Query: 183 QRNIS 187
           Q NI 
Sbjct: 164 QHNIP 168


>gi|153807264|ref|ZP_01959932.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185]
 gi|149130384|gb|EDM21594.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185]
          Length = 365

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 62/188 (32%), Gaps = 36/188 (19%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +L+ +SGG+DS     A+  + +      + F    ++      + + +     +   
Sbjct: 6   KRVLLGMSGGTDSSV--AAMRLLEAGYEVIGVTFRFYELN-----GSTEYLEDARSLAEH 58

Query: 80  LRIAHSVVSWKNSKPQTGLM------AAARE----------ARYALISEHAKTINATLIM 123
           L I H     +    +  +        A R            ++ L++E A  +    I 
Sbjct: 59  LGIRHITYDAREVFNKQIIEYFVQEYMAGRTPVPCTLCNNYLKWPLLAELADEMGIFYIA 118

Query: 124 TAHT-----FDDQLETVYMRSQRDYAEKGM-GLSGMCDTILYDLNLWISRPFLRCRREDI 177
           T H       +D   T Y+ S  D  +     L G+   IL  +      P     + + 
Sbjct: 119 TGHYVRKVKLED---TYYITSAADSDKDQTFFLWGLKQDILRRM----LLPMGDITKVEA 171

Query: 178 RSFLLQRN 185
           R+   +R 
Sbjct: 172 RALAAERG 179


>gi|148359261|ref|YP_001250468.1| GMP synthetase [Legionella pneumophila str. Corby]
 gi|296107308|ref|YP_003619008.1| GMP synthase (glutamine-hydrolysing) [Legionella pneumophila
           2300/99 Alcoy]
 gi|226739638|sp|A5ICM2|GUAA_LEGPC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148281034|gb|ABQ55122.1| GMP synthetase [Legionella pneumophila str. Corby]
 gi|295649209|gb|ADG25056.1| GMP synthase (glutamine-hydrolysing) [Legionella pneumophila
           2300/99 Alcoy]
          Length = 525

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 22/187 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + +      +   + VD   LR     E  
Sbjct: 220 IREQVGTEKVLLGLSGGVDSSVVAALLHRAIGE------QLVCVFVDTGLLRLN---EAE 270

Query: 72  YVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAA----REARYALISEHAKTINATL 121
            V       + I    V+ ++      K  T          R        E  K  +   
Sbjct: 271 QVLSMFGRHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEVFDEEAQKLTDIKW 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    +  + A   +        +   LNL +  P     ++++R   
Sbjct: 331 LAQGTIYPDVIESA--ATSTNDAAVVIKSHHNVGGLPDTLNLKLLEPIRELFKDEVRQVG 388

Query: 182 LQRNISW 188
           L+  +  
Sbjct: 389 LELGLPH 395


>gi|114332211|ref|YP_748433.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrosomonas eutropha C91]
 gi|122313115|sp|Q0ADW4|GUAA_NITEC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|114309225|gb|ABI60468.1| GMP synthase (glutamine-hydrolyzing) [Nitrosomonas eutropha C91]
          Length = 519

 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           +R+ V    +++ +SGG DS      +H  + D      +   + VD+  LR   AK  +
Sbjct: 215 IRARVGGDKVILGLSGGVDSSVAAALIHRAIGD------QLVCVFVDNGLLRLNEAKQTM 268

Query: 71  R-YVSDVCSRLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATLI 122
             +  ++   + + +   S +        + P+       RE       E AK  N   +
Sbjct: 269 ETFSRNLA--VNVIYVDASRQFLEQLKGITDPEQKRRTIGREFVEIFQQEAAKIENVKWL 326

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDIRS 179
                + D +E+           K  GL         +   L L +  P     ++++R 
Sbjct: 327 AQGTIYPDVIESA------GSHTKKSGLIKSHHNVGGLPETLRLKLLEPLRELFKDEVRE 380

Query: 180 FLLQRNIS 187
             L   + 
Sbjct: 381 LGLALGLP 388


>gi|257459254|ref|ZP_05624371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter gracilis RM3268]
 gi|257443353|gb|EEV18479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter gracilis RM3268]
          Length = 343

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 33/183 (18%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA---ISVDHCLRETAKDEVRYVSDVC 77
            IL+A+SGG DS      L     +     +K  A              +  +  V  V 
Sbjct: 2   KILIAMSGGVDSSMCAKLLQDAGHEVQGCYMKLHAKPGYH---------EANIAKVRKVG 52

Query: 78  SRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALISEHAKTINATL 121
             L I   ++  ++   +                   A   R  +   + E A+      
Sbjct: 53  EFLGIKIHILDLQDDFNRDVYEPFVQAYIGGLTPNPCALCNRRIKLGKLLEFAREQGFER 112

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           + T H    ++E   +++  D ++         D    +  L+   P     ++D++   
Sbjct: 113 LATGHYV--RIEDGLLKAAADLSKDQSYFLANIDPAALEFMLF---PLGGMYKKDVKEAA 167

Query: 182 LQR 184
              
Sbjct: 168 RAY 170


>gi|261191592|ref|XP_002622204.1| GMP synthase subunit B [Ajellomyces dermatitidis SLH14081]
 gi|239589970|gb|EEQ72613.1| GMP synthase subunit B [Ajellomyces dermatitidis SLH14081]
 gi|239612622|gb|EEQ89609.1| GMP synthase subunit B [Ajellomyces dermatitidis ER-3]
 gi|327356872|gb|EGE85729.1| GMP synthase subunit B [Ajellomyces dermatitidis ATCC 18188]
          Length = 543

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 70/204 (34%), Gaps = 38/204 (18%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I+ +R  V        ++ AVSGG DS      +   + +R      F A+ VD+  LR 
Sbjct: 225 IDRIRKLV---GEKGQVIGAVSGGVDSTVAAKLMQKAIGNR------FHAVLVDNGVLRL 275

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVV--SWKNSKPQTGLMAAAREARYALISEHAK------ 115
               E   V + +   L +  +VV  S +      G+     + R  + +   +      
Sbjct: 276 N---EAAIVKETLTKHLGVNLTVVDASERFLSKLKGITDDPEKKRKVIGNTFIEVFQEEA 332

Query: 116 ------------TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
                             ++    + D +E++  +      +    + G+ +     ++L
Sbjct: 333 KKIAAAAQGSPNEGEIEWLLQGTLYPDVIESISFKGPSATIKTHHNVGGLLE----GMHL 388

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
            +  P     ++++R    Q  I 
Sbjct: 389 KLIEPLRELFKDEVRELGKQLGIP 412


>gi|119175480|ref|XP_001239961.1| GMP synthase [Coccidioides immitis RS]
          Length = 539

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHCLRETAKDEV 70
           +R LV    H+L AVSGG DS      +   + DR      F A+ V + C+R     E 
Sbjct: 223 IRKLVGETDHVLGAVSGGVDSTVASKLMKEAIGDR------FHAVLVNNGCMRLN---EC 273

Query: 71  RYVSD-VCSRLRIAHSVVS-----WKNSKPQTGLMAAAR----------EARYALISEHA 114
             V + +   L I  +VV          K  T      +          EA    I    
Sbjct: 274 EQVHETLGKHLGINLTVVDASKQFLDALKGVTDPERKRKIIGGKFIDVFEAEALKIEAGV 333

Query: 115 KTINA--TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
           K   A     +    + D +E++  +      +    + G+   +     L +  P    
Sbjct: 334 KHTGAKVKWFLQGTLYPDVIESLSFKGPSATIKTHHNVGGLPKRMQEGAGLKLIEPLREL 393

Query: 173 RREDIRSFLLQRNI 186
            ++++R    +  I
Sbjct: 394 FKDEVRQLGRELGI 407


>gi|254521778|ref|ZP_05133833.1| glutamine amidotransferase [Stenotrophomonas sp. SKA14]
 gi|219719369|gb|EED37894.1| glutamine amidotransferase [Stenotrophomonas sp. SKA14]
          Length = 521

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 59/188 (31%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + ++       + + VD   LR +     +
Sbjct: 217 VREQVGDDEVILGLSGGVDSSVVAALLHKAIGEK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTI-----NA 119
                    + +   VV    +              A R+    L  E          NA
Sbjct: 271 AM---FAEHMGVK--VVRVNAADRYFAALEGVSDPEAKRKIIGNLFVEIFDEESNKLKNA 325

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +   + L +  P     ++++R 
Sbjct: 326 KWLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRR 382

Query: 180 FLLQRNIS 187
             ++  + 
Sbjct: 383 LGVELGLP 390


>gi|190574033|ref|YP_001971878.1| GMP synthase [Stenotrophomonas maltophilia K279a]
 gi|226739746|sp|B2FNS1|GUAA_STRMK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|190011955|emb|CAQ45577.1| putative GMP synthase (glutamine-hydrolyzing) [Stenotrophomonas
           maltophilia K279a]
          Length = 521

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 59/188 (31%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + ++       + + VD   LR +     +
Sbjct: 217 VREQVGDDEVILGLSGGVDSSVVAALLHKAIGEK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTI-----NA 119
                    + +   VV    +              A R+    L  E          NA
Sbjct: 271 AM---FAEHMGVK--VVRVNAADRYFAALEGVSDPEAKRKIIGNLFVEIFDEESNKLKNA 325

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +   + L +  P     ++++R 
Sbjct: 326 KWLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRR 382

Query: 180 FLLQRNIS 187
             ++  + 
Sbjct: 383 LGVELGLP 390


>gi|50424519|ref|XP_460848.1| DEHA2F11110p [Debaryomyces hansenii CBS767]
 gi|74601398|sp|Q6BLS3|GUAA_DEBHA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49656517|emb|CAG89193.1| DEHA2F11110p [Debaryomyces hansenii]
          Length = 529

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 30/202 (14%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + I++    ++ LV P A ++ AVSGG DS      +   + DR      F AI VD+ L
Sbjct: 211 NFIDTEIARIQKLVGPTAEVIGAVSGGVDSTVGAKIMKEAIGDR------FHAIYVDNGL 264

Query: 63  -RETAKDEVRYV-SDVCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALIS 111
            R     E   V   +   L I  +VV   +         + P+           +   +
Sbjct: 265 MRLN---ETEQVYKTLTEGLGINLTVVDATDLFLGKLQGVTDPEKKRKIIGNNFIHVFEA 321

Query: 112 EHAKTINA-----TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           E AK   A       ++    + D +E++  +      +    + G+ +    D+ L + 
Sbjct: 322 EAAKIKPASGQEIEYLLQGTLYPDVIESISFKGPSQTIKTHHNVGGLLE----DMKLKLI 377

Query: 167 RPFLRCRREDIRSFLLQRNISW 188
            P     ++++R       +  
Sbjct: 378 EPLRELFKDEVRHLGEIMGVPH 399


>gi|167945139|ref|ZP_02532213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 145

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 32/130 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------AKDEVRYV 73
            I+V +SGG DS    + L           +K           E        A  ++   
Sbjct: 7   KIIVGMSGGVDSSVAALLLLEQGYQVEGLFMK--------NWEEDDTKEYCSAATDLADA 58

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKT 116
           S V  +L I    V++     +          R  R               A +     T
Sbjct: 59  SSVADQLGIPLHSVNFSADYWERVFAYFLDEYRAGRTPNPDVLCNREIKFKAFLDYALST 118

Query: 117 INATLIMTAH 126
           + A+ I T H
Sbjct: 119 LGASRIATGH 128


>gi|149375102|ref|ZP_01892874.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Marinobacter algicola DG893]
 gi|149360466|gb|EDM48918.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Marinobacter algicola DG893]
          Length = 525

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +RS V    +L+ +SGG DS      LH  + D      + + + VD+ L
Sbjct: 221 IRSQVGSGKVLLGLSGGVDSSVTAALLHKAIGD------QLTCVFVDNGL 264


>gi|325968586|ref|YP_004244778.1| phosphoadenosine phosphosulfate reductase [Vulcanisaeta moutnovskia
           768-28]
 gi|323707789|gb|ADY01276.1| phosphoadenosine phosphosulfate reductase [Vulcanisaeta moutnovskia
           768-28]
          Length = 300

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++V  SGG DS  +L    +V          F  + +DH +     + + ++  V   
Sbjct: 64  KKVVVVWSGGKDSTVVLHLAKTVADRVGKA---FDVVFIDHYMH--FDETLEFIEKVAKE 118

Query: 80  LRIAHSV 86
             +   V
Sbjct: 119 WGLRLFV 125


>gi|159469071|ref|XP_001692691.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158277944|gb|EDP03710.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 365

 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 35/134 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---------DEVR 71
            + V +SGG DS   L  L +   D +   ++          +E  +         +++ 
Sbjct: 6   RVAVLLSGGVDSSLALRLLVAAGHDVTAFYLQIW-------FQEDFRNFWDACPWEEDLE 58

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALISEHA 114
           Y   VC  L +   VV          + ++  E R                  A     A
Sbjct: 59  YARKVCEALGVKLEVVPLTTQYWDRVVASSVAEIRAGRTPNPDIWCNSRVKFGAFYDHLA 118

Query: 115 KTINA--TLIMTAH 126
           +   A    + + H
Sbjct: 119 QRHGAEFDRVASGH 132


>gi|119963478|ref|YP_948792.1| sulfate adenylyltransferase subunit 2 [Arthrobacter aurescens TC1]
 gi|119950337|gb|ABM09248.1| sulfate adenylyltransferase, small subunit [Arthrobacter aurescens
           TC1]
          Length = 319

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V     PA +    SGG DS+ +L            GK+ F  + VD  H 
Sbjct: 34  EAIHIIREVVAEFEKPALL---FSGGKDSVVMLHLATKAF---WPGKVPFPVLHVDTGHN 87

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
             E      R V     RL +   V S +    +  L   A
Sbjct: 88  FPEVIDFRDRTV----ERLGLKLVVGSVQEFIDRGELAERA 124


>gi|329113810|ref|ZP_08242581.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001]
 gi|326696820|gb|EGE48490.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001]
          Length = 360

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 44/181 (24%), Gaps = 45/181 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---------AISVDHCLRETAKDEVR 71
            ILVA+SGG DS  +   L     +     ++           A          A  ++R
Sbjct: 2   RILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGAAKKGACC--------AGQDIR 53

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS----EHAKTINATLIMTAHT 127
               V   L   H V+  +     + +   A    YA         A             
Sbjct: 54  DARAVADLLGFPHYVIDAERRFKDSVIERFADA--YASGETPVPCVACNQGVKF------ 105

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP----------FLRCRREDI 177
                 T  +   R+     M        +       + RP               R+ +
Sbjct: 106 ------TDLLGLAREIGADAMATGHYVRRVEGPEGAELHRPCDEDRDQSWFLFATTRDQL 159

Query: 178 R 178
            
Sbjct: 160 E 160


>gi|325989606|ref|YP_004249305.1| Trifunctional protein ribF/mnmA [Mycoplasma suis KI3806]
 gi|323574691|emb|CBZ40347.1| Trifunctional protein ribF/mnmA [Mycoplasma suis]
          Length = 369

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 18/86 (20%)

Query: 15 SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRE------- 64
          S +    +++A+SGG DS    + L            K   I +   D  L E       
Sbjct: 2  SSLVEKKVVIALSGGVDSSVAALLLKK-------EGYKVFGIHMINWDSQLNELEMDKEC 54

Query: 65 TA-KDEVRYVSDVCSRLRIAHSVVSW 89
           +   +  Y   +  +L I   V ++
Sbjct: 55 ESLSKDREYAEIIAQQLEIPFFVYNF 80


>gi|253828114|ref|ZP_04870999.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511520|gb|EES90179.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Helicobacter canadensis MIT 98-5491]
          Length = 349

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 42/192 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------V 73
             +L+ +SGG DS      L           +K                E ++      +
Sbjct: 2   KKVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLH------------DKEEKHDYYTRNI 49

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTI 117
                 L I + +V  +    ++                  A      ++ +  + AK +
Sbjct: 50  QKCAESLNIPYQIVDERELFKKSVYDYFVDSYKKGLTPNPCAMCNPNVKFNIAFKLAKDL 109

Query: 118 NATLIMTAHTFDDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               + T H    Q++     ++   + ++   L G+    +      I  P    ++E+
Sbjct: 110 GCEFVATGHYA--QIKNGRIAQAVDTHKDQSYFLFGLKPEWIEK----IIFPLGDKKKEE 163

Query: 177 IRSFLLQRNISW 188
           I+   L+  + W
Sbjct: 164 IKPIALKE-LPW 174


>gi|224419182|ref|ZP_03657188.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter canadensis MIT
           98-5491]
          Length = 190

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 59/192 (30%), Gaps = 42/192 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------V 73
             +L+ +SGG DS      L           +K                E ++      +
Sbjct: 2   KKVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLH------------DKEEKHDYYTRNI 49

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTI 117
                 L I + +V  +    ++                  A      ++ +  + AK +
Sbjct: 50  QKCAESLNIPYQIVDERELFKKSVYDYFVDSYKKGLTPNPCAMCNPNVKFNIAFKLAKDL 109

Query: 118 NATLIMTAHTFDDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
               + T H    Q++     ++   + ++   L G+    +      I  P    ++E+
Sbjct: 110 GCEFVATGHYA--QIKNGRIAQAVDTHKDQSYFLFGLKPEWIEK----IIFPLGDKKKEE 163

Query: 177 IRSFLLQRNISW 188
           I+   L+  + W
Sbjct: 164 IKPIALKE-LPW 174


>gi|220935548|ref|YP_002514447.1| NAD(+) synthase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996858|gb|ACL73460.1| NAD(+) synthase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 334

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 13/116 (11%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
            ++R  +R  +    +++A+SGG DS +   + + ++   + FG +           R++
Sbjct: 23  AALREILRKDLNRRGLIIAISGGVDSAVCAALCVKALGPGKVFGLLLPE--------RDS 74

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           + + VR    V  +L I ++V     +    G        R   I       + T 
Sbjct: 75  SSNSVRLGRMVAEQLGIEYTVEDIAPTLEAIG----CYRWRDDAIRSVFPDYDGTW 126


>gi|189183712|ref|YP_001937497.1| tRNA-specific 2-thiouridylase MnmA [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180483|dbj|BAG40263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Orientia tsutsugamushi str. Ikeda]
          Length = 369

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 76/208 (36%), Gaps = 39/208 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETA------KDEV 70
           A I+VA+SGG DS  +   L     +     ++      +H     R+ A        + 
Sbjct: 11  ATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLY----NHDTAINRKGACCAGQDIYDA 66

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGL---------------MAAARE-ARYALISEHA 114
           ++V++   +L+I H V+++K+   ++ +                    +  ++  +   A
Sbjct: 67  KFVAN---QLQIPHYVLNYKDKFKKSVIDNFIESYINGETPLPCVQCNQSVKFHDLLNFA 123

Query: 115 KTINATLIMTAH--TFDDQLETV-YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           K + A  ++T H     D    +   ++     ++   L     + L     ++  P   
Sbjct: 124 KDLQADALVTGHYVRRIDTANGIELHKAVDSKKDQSYFLFATTKSQLQ----YLHFPLGN 179

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRF 199
             +++ R    +  +   + P + D  F
Sbjct: 180 MTKDETRYHANRYGLHIADKPDSQDICF 207


>gi|119872944|ref|YP_930951.1| asparagine synthase [Pyrobaculum islandicum DSM 4184]
 gi|119674352|gb|ABL88608.1| asparagine synthase [Pyrobaculum islandicum DSM 4184]
          Length = 285

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            +A SGG DS  + +A   +               V+  L E+   +  +  +   RL +
Sbjct: 17  AIAFSGGLDSTAVALAHVKLGHRPLL---------VNVQLAESPGTDAPHAVEAARRLGL 67

Query: 83  AHSVVSWKNSKPQTGLMA 100
              V      +    +  
Sbjct: 68  PLVVRYVPMWEALAAVEE 85


>gi|157804083|ref|YP_001492632.1| trans-regulatory protein ExsB [Rickettsia canadensis str. McKiel]
 gi|167016449|sp|A8EZR4|QUEC_RICCK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|157785346|gb|ABV73847.1| Trans-regulatory protein ExsB [Rickettsia canadensis str. McKiel]
          Length = 227

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA-H 84
          VSGG+DS  +L     +         +  A+S ++  R  A  E+R V ++     +  H
Sbjct: 8  VSGGADSATVLAIAQKM-------GYEIYAMSFNYGQRNNA--ELRKVRELVKEYNVKQH 58

Query: 85 SVVSWK 90
           +V+  
Sbjct: 59 KIVNID 64


>gi|189345786|ref|YP_001942315.1| GMP synthase [Chlorobium limicola DSM 245]
 gi|226738416|sp|B3EEV3|GUAA_CHLL2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|189339933|gb|ACD89336.1| GMP synthase, large subunit [Chlorobium limicola DSM 245]
          Length = 513

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 16/183 (8%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE-TAKDEV 70
           +R       ++  +SGG DS        +VL  R+ GK     + VD+  LR+  A   +
Sbjct: 214 IRRTAGDETVICGISGGVDSSV-----AAVLVSRAIGK-NLHCVFVDNGLLRKNEADKVM 267

Query: 71  RYVSDVCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTF- 128
           +++  +  RL +A  S +  K  K         +      I    + ++    +   T  
Sbjct: 268 QFLKHLGLRLTLADASELFLKRLKNVASPEKKRKIIGRTFIQVFEEQLDKEKFLVQGTLY 327

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
            D +E+V ++   +  +    + G+       + L +  P     ++++R+   +  I+ 
Sbjct: 328 PDVIESVSVKGPSETIKSHHNVGGL----PKRMKLKLIEPLRELFKDEVRAVGRELGIA- 382

Query: 189 CED 191
            ED
Sbjct: 383 -ED 384


>gi|257438705|ref|ZP_05614460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198840|gb|EEU97124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Faecalibacterium prausnitzii A2-165]
          Length = 170

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 3/115 (2%)

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIMTAHTF 128
           V    +    L I    ++      Q     AA  + R+  +   A  +    I T H  
Sbjct: 58  VDAAKEAAKALGIECITLNASELASQLAEETAAPADLRFPALLAAADRLGIQYIATGHRA 117

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
             ++ET           +    S     +  +    +  P      ED+     +
Sbjct: 118 --RVETGADGVHVLCPAEIADESARLAALPQETLGRLILPLGDFSPEDVAEMAAE 170


>gi|16800415|ref|NP_470683.1| hypothetical protein lin1347 [Listeria innocua Clip11262]
 gi|16413820|emb|CAC96578.1| lin1347 [Listeria innocua Clip11262]
 gi|313619156|gb|EFR90939.1| phosphoadenosine phosphosulfate sulfotransferase [Listeria
          innocua FSL S4-378]
          Length = 434

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKDEVRYVSD 75
           +I+V+ SGG DS  +L  +   +   +  K K     +D+      T+     +V++
Sbjct: 22 DNIIVSFSGGKDSAVMLHLMIDYIRKNNIQK-KIYVYHLDYEGQYSATSD----FVAE 74


>gi|295134753|ref|YP_003585429.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Zunongwangia profunda SM-A87]
 gi|294982768|gb|ADF53233.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Zunongwangia profunda SM-A87]
          Length = 509

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  +    +++ +SGG DS    + LH  +            I V++  LR+   ++V 
Sbjct: 207 LKEKIGDDKVVLGLSGGVDSTVAAMLLHKAIGK------NLYCIFVNNGLLRKNEFEDVL 260

Query: 72  Y 72
           +
Sbjct: 261 H 261


>gi|262306077|gb|ACY45631.1| gln amidotransferase [Machiloides banksi]
          Length = 198

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           ++R  V  + +L+ VSGG DS      LH  L +      +   + +D+   R+    E 
Sbjct: 36  YIRETVGNSKVLLLVSGGVDSTVCGALLHKALPED-----QVIGVHIDNGFMRKH---ES 87

Query: 71  RYVSDVCSRLRIAHSVVS 88
           + V    +++ +    V 
Sbjct: 88  QKVEQSLAKVGLRLRAVR 105


>gi|58039815|ref|YP_191779.1| tRNA-specific 2-thiouridylase MnmA [Gluconobacter oxydans 621H]
 gi|58002229|gb|AAW61123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gluconobacter oxydans 621H]
          Length = 355

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 27/122 (22%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------AKDEVRYVSDVCSRL 80
           SGG DS  +   L     +     ++      DH  +        A  ++     V  RL
Sbjct: 2   SGGVDSSVVAALLKRQGHEVIGATLQLY----DHG-QAAKPGACCAGRDIMDARAVADRL 56

Query: 81  RIAHSVV----SWKNSKPQTGLMAAAR------------EARYALISEHAKTINATLIMT 124
              H V+     +++S  ++   A AR              ++  +   A+ +    + T
Sbjct: 57  GFPHYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLGCEAMAT 116

Query: 125 AH 126
            H
Sbjct: 117 GH 118


>gi|118580257|ref|YP_901507.1| tRNA-specific 2-thiouridylase MnmA [Pelobacter propionicus DSM
           2379]
 gi|205816920|sp|A1AQ29|MNMA_PELPD RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118502967|gb|ABK99449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pelobacter propionicus DSM 2379]
          Length = 355

 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 32/192 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA---------------------ISVD 59
            I VA+SGG DS      L     +     ++F A                     I+  
Sbjct: 2   KIAVAMSGGVDSSVAAALLKEQGHEIIGITMQFFAPSCQGAGTPAHDAAVVAAHLGIT-H 60

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           H L      E  +      +L I   +  +++ +     +   R  ++ L+ + A+   A
Sbjct: 61  HLL----DLEHDF-----RQLIINDFISQYRSGQTPNPCVRCNRFVKFGLLLDAARERGA 111

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC-RREDIR 178
            L+ T H     ++    R  R  A      +    T+  +    +  P      ++++R
Sbjct: 112 DLLATGHYARTSIDPDGTRHLRVAANLRKDQTYFLHTLSQERLARVVFPLGDIGSKDEVR 171

Query: 179 SFLLQRNISWCE 190
               +  +   E
Sbjct: 172 DLAHRFGLPVAE 183


>gi|317474596|ref|ZP_07933870.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909277|gb|EFV30957.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA]
          Length = 357

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 63/215 (29%), Gaps = 70/215 (32%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE 69
           +++   +     +L+ +SGG+DS    + L     + +    +F    VD   R    D+
Sbjct: 2   KYYFCGMKSKERVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFY--EVDG--RTEYLDD 57

Query: 70  VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY---------------------- 107
                 + +RL I H     +    +       R  RY                      
Sbjct: 58  A---RALAARLGIEHVTYDARELFRE-------RIIRYFIDEYLAGHTPVPCTLCNNELK 107

Query: 108 -ALISEHAKTINATLIMTAHTF----------------DDQLETVYMRSQRDYAEKGMGL 150
            AL++  A       I T H                   D+ +T +             L
Sbjct: 108 WALLARIADEKGIYWISTGHYARKALLGEQCYIAPASDRDKDQTFF-------------L 154

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
            G+   IL  +      P     +E+ R++   R 
Sbjct: 155 WGLKQDILQRM----LLPMGDVTKEEARAYAAGRG 185


>gi|289578840|ref|YP_003477467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter italicus Ab9]
 gi|289528553|gb|ADD02905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Thermoanaerobacter italicus Ab9]
          Length = 364

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 74/245 (30%), Gaps = 64/245 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV-- 73
           +     ++V +SGG DS      L     +          I V   + +   +E   V  
Sbjct: 1   MKKNNRVVVGMSGGVDSSVSAYLLKEQGYE---------VIGVTMQIWQDKDEEAVRVEG 51

Query: 74  -----------SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREARY 107
                        V +++ I + V+++K+   +                    A  +  Y
Sbjct: 52  GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNK--Y 109

Query: 108 ALISEHAKT---INATLIMTAHTF----DDQLETVYMRSQRDYAEKGMG-LSGMCDTILY 159
               E  K    I A  + T H      D++     ++   D ++     L  +  T L 
Sbjct: 110 IKFEELLKRAWMIEAYYVATGHYAIKEYDEERGRYLLKKSVDTSKDQTYVLYNLTQTQLE 169

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS-----------WCEDPSNTDDRFERVRVRRFV 208
                I  P  + +++++R       +            +  D  N   +F R   +  +
Sbjct: 170 ----HILFPLGKYKKDEVRKLAKDLGLPVASKPDSQEICFVTD--NDYGKFIRENAKEEI 223

Query: 209 RDIDL 213
           +  + 
Sbjct: 224 KPGEF 228


>gi|238019350|ref|ZP_04599776.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748]
 gi|237864049|gb|EEP65339.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748]
          Length = 363

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 57/192 (29%), Gaps = 38/192 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY----VSDVC 77
           I VA+SGG DS   L A   +        I             T  D V         +C
Sbjct: 15  IAVAMSGGVDSS--LTAAMLLKQGYKVFGITLWLWV-----SGTPYDSVPLAVTDAKKMC 67

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINATL 121
             L I H V+  ++      +    +E  Y                 L+   A  + AT 
Sbjct: 68  DFLGIEHHVIDARDVFYDNVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATH 127

Query: 122 IMTAH--TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCRRE 175
           ++T H    +   ET      +               ++Y++N  I      P     + 
Sbjct: 128 MVTGHYAQVNYNEETGLYELHKGVDPT-----KDQSYVMYNMNQRILSHLMFPLGGQCKT 182

Query: 176 DIRSFLLQRNIS 187
           + R    + ++ 
Sbjct: 183 ETRKLAAEYDLP 194


>gi|168333531|ref|ZP_02691800.1| NAD+ synthetase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 241

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 27/188 (14%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +E +R +V+ +   A +++ +SGG DS          L       +              
Sbjct: 9   LEFIRDYVK-MAGAAGVVIGISGGKDSAVTTALCVKALGADKVLGVSM----------PC 57

Query: 66  AK--DEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGLMAAAR-EARYALISEHAKTINAT 120
           +    +V +   V     +   VV  K+S  Q    + +    E R   ++     +   
Sbjct: 58  SSNPADVEHAKMVAEAFGVELFVVELKDSYEQMKKSISSQVDFELRDIALANIKPRLRMI 117

Query: 121 LIMT-AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
            + T A T +  +               +    M     +    +   P      +++  
Sbjct: 118 TLYTLAQTKNYLV----------VGTDNLSEMVMGYFTKWGDGAYDINPLSDLTVKEVLE 167

Query: 180 FLLQRNIS 187
           F  +  + 
Sbjct: 168 FGKELGVP 175


>gi|157736745|ref|YP_001489428.1| tRNA-specific 2-thiouridylase MnmA [Arcobacter butzleri RM4018]
 gi|205810156|sp|A8ES35|MNMA1_ARCB4 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1
 gi|157698599|gb|ABV66759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Arcobacter butzleri RM4018]
          Length = 345

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 25/127 (19%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--VRYVSD 75
               ++V +SGG DS      L +   +     +K       H  R     E  + Y+ D
Sbjct: 2   SKKKVMVGMSGGIDSSVTAYMLQNEGYEVEGIYLKL------HN-RTDGYHEKNLGYIED 54

Query: 76  VCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTINA 119
           V   L I + ++   +   +                       R+ ++  + + AK   A
Sbjct: 55  VAKFLNIKYYILDLADKFSKEVYDYFVDSYLTGTTPNPCVKCNRQIKFGAMLDFAKQHGA 114

Query: 120 TLIMTAH 126
           + + T H
Sbjct: 115 SYLATGH 121


>gi|328349957|emb|CCA36357.1| GMP synthase (glutamine-hydrolysing) [Pichia pastoris CBS 7435]
          Length = 526

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +R+LV P A ++ AVSGG DS      +   + DR      F AI VD
Sbjct: 217 IRTLVGPTAEVIGAVSGGVDSTVAAKLMKEAIGDR------FHAIYVD 258


>gi|325111007|ref|YP_004272075.1| GMP synthase (glutamine-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
 gi|324971275|gb|ADY62053.1| GMP synthase (glutamine-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
          Length = 531

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 25/196 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+     +R  V  + ++  +SGG DS  +   L+  +        + S I VD+  L
Sbjct: 218 SLIDREIESIRERVGKSRVICGLSGGVDSSVVAALLYRAI------GPQLSCIFVDNGLL 271

Query: 63  RETAKDEVRYV--SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI--- 117
           R+   D VR+       + L +  +   +             R+    +  +  +     
Sbjct: 272 RKGESDSVRHHFQEHFRTDLHVVDASKQFLGELSGVSDPQKKRKIIGKIFIDVFREEAKS 331

Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLR 171
             +A  +     + D +E+          + G             +  +L   +  P   
Sbjct: 332 IDDARFLAQGTLYPDVIES-------GANKDGPAATIKSHHNVGGLPEELGFELIEPLRD 384

Query: 172 CRREDIRSFLLQRNIS 187
             ++++R   L+  + 
Sbjct: 385 LFKDEVRKMGLELGLP 400


>gi|254564849|ref|XP_002489535.1| GMP synthase, an enzyme that catalyzes the second step in the
           biosynthesis of GMP from IMP [Pichia pastoris GS115]
 gi|238029331|emb|CAY67254.1| GMP synthase, an enzyme that catalyzes the second step in the
           biosynthesis of GMP from IMP [Pichia pastoris GS115]
          Length = 513

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           +R+LV P A ++ AVSGG DS      +   + DR      F AI VD
Sbjct: 204 IRTLVGPTAEVIGAVSGGVDSTVAAKLMKEAIGDR------FHAIYVD 245


>gi|118473593|ref|YP_886701.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium smegmatis str.
           MC2 155]
 gi|166235065|sp|A0QUW3|MNMA_MYCS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|118174880|gb|ABK75776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 356

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 61/211 (28%), Gaps = 50/211 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------AKD 68
            +LVA+SGG DS      +     D          + V   L               +K+
Sbjct: 2   RVLVAMSGGVDSSVAAARMVDAGHD---------VVGVHLALSSAPGTLRTGSRGCCSKE 52

Query: 69  EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAR------------EARYALISE 112
           +      V   L I   V      +K+      + + AR              +++ ++ 
Sbjct: 53  DASDARRVADILGIPFYVWDFADRFKDDVIDDFVESYARGETPNPCVRCNERIKFSALAA 112

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRP 168
            A  +    + T H           R       + +      S +   +  +       P
Sbjct: 113 RALALGFDAVATGHYA---------RLSDGRLRRAVDADKDQSYVLGVLTAEQLRHALFP 163

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                +  IR+   +R ++  E P + D  F
Sbjct: 164 IGDTPKPQIRAEAAERGLAVAEKPDSHDICF 194


>gi|255535022|ref|YP_003095393.1| Argininosuccinate synthase [Flavobacteriaceae bacterium 3519-10]
 gi|255341218|gb|ACU07331.1| Argininosuccinate synthase [Flavobacteriaceae bacterium 3519-10]
          Length = 396

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 59/193 (30%), Gaps = 60/193 (31%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S   +             +++  A+ V+  L   +++E++   +   +
Sbjct: 3   KVVLAYSGGLDTSFCAVYL-------SKVKQLEVHAVMVN--LGGFSEEEIKKTEERAYQ 53

Query: 80  LRIAHSVVSWKNSKPQTGLM------------------AAAREARYALISEHAKTINATL 121
           L +    V           +                  ++ R  +   I+ +AK I A  
Sbjct: 54  LGVKSFHVIDDAQNYYDNCIKYLIFGNVLKNNTYPLSVSSERVFQATAIAHYAKEIGAKA 113

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP---------FLRC 172
           I  AH                    G G     D + +D    I  P          L+ 
Sbjct: 114 I--AH-----------------GSTGAG----NDQVRFDSIFQILLPEGEIITPIRDLKL 150

Query: 173 RREDIRSFLLQRN 185
            R +   FL +  
Sbjct: 151 SRNEEIEFLKENG 163


>gi|254303976|ref|ZP_04971334.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
 gi|148324168|gb|EDK89418.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. polymorphum ATCC 10953]
          Length = 512

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 25/198 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IESTVKQIKERVGNKQVILGLSGGVDSSVAAALINKAIGK------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +V ++   + I       +        + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFDMNIKCVNAEERFLIKLAGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D +E+V ++      +    + G+ + + ++    +  P     +
Sbjct: 313 KIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFE----LLEPLRELFK 368

Query: 175 EDIRSFLLQRNIS-WCED 191
           +++R    +  I  +  D
Sbjct: 369 DEVRKVGRELGIPDYMVD 386


>gi|33241175|ref|NP_876117.1| PP family ATPase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238705|gb|AAQ00770.1| ATP-utilizing enzyme, PP-loop superfamily [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 285

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 91/263 (34%), Gaps = 74/263 (28%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--- 59
           +  ++ +R F++ L     + +A SGG DS        S+++     ++  +AI+V    
Sbjct: 13  VKQLDLLRDFIKDL---KKVCIAYSGGVDS--------SLIAAIGKEQLDNNAIAVTGVS 61

Query: 60  -----HCLRETAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGLMA---AAREARYA 108
                H L E A+ + R++        I H        ++   +   +    A ++  + 
Sbjct: 62  ASLAPHLL-EEARLQARWI-------GIEHQECKTNELQDPNYKANPIDRCFACKKELHN 113

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            +   AK  +   ++     DD      ++  R    +   L+G+   +           
Sbjct: 114 NLGIIAKKFSNAQVVDGVNADD------IKDYR-PGIEAAHLAGVKSPLAE--------- 157

Query: 169 FLRCRREDIRSFLLQRNISWCE--------------DPSNTDDRFERVRVRRFVRDIDLH 214
            L+  +  IR       + W +              DP N +           ++ +   
Sbjct: 158 -LQINKASIREISKALGLPWWDKPAQPCLASRFHYGDPINLE----------RLKQVAKA 206

Query: 215 ALYLKMKKFQDLRVKVNNAVAML 237
             +L  K F  +RV+V   VA +
Sbjct: 207 EKWLIDKGFPKVRVRVQGLVARI 229


>gi|313905035|ref|ZP_07838405.1| argininosuccinate synthase [Eubacterium cellulosolvens 6]
 gi|313470105|gb|EFR65437.1| argininosuccinate synthase [Eubacterium cellulosolvens 6]
          Length = 412

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 24/179 (13%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE---VRYVSDVC 77
            +++A SGG D+  L      +   +     +   + ++    E   D+    R +S   
Sbjct: 4   KVVLAYSGGLDTTAL------IPWLKENFGYEIICVCINCGQEEELTDDNLQERALSSGA 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIM-TAHTFDDQLETV 135
           S+L I   V  + +      + A A  E +Y L +  A+ + A  ++  AH         
Sbjct: 58  SKLYIEDVVDEFADEYIMPCVQAGAVYEHQYLLGTSMARPLIAKRLVEIAHNEGASA--- 114

Query: 136 YMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRP--FLRC----RREDIRSFLLQRNIS 187
                     KG   +         D ++ I  P           RED   F     I 
Sbjct: 115 ---ICHGATGKGNDQIRFELGIKALDPDIKIIAPWRMPEVWKMDSREDEIQFCKDHGID 170


>gi|313205650|ref|YP_004044827.1| gmp synthase (glutamine-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|312444966|gb|ADQ81321.1| GMP synthase (glutamine-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
          Length = 509

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 32/191 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + +H  +        + + I VD   LR+    E +
Sbjct: 206 IRQKVGNQKVILGLSGGVDSSVAAVLIHKAI------GSQLTCIFVDTGLLRKN---EAQ 256

Query: 72  YV-SDVCS--RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAKTINATL 121
            V  +  S   L I     S +        S P+        E       E  K   A  
Sbjct: 257 KVMENYGSHFNLNIKLIDASERFLSKLKGVSDPEQKRKIIGNEFVAVFDEESHKIEGAKF 316

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFLRCRREDI 177
           +           T+Y       + KG             +  D+   +  P     ++++
Sbjct: 317 LAQG--------TIYPDVIESQSVKGPSAVIKSHHNVGGLPEDMEFELLEPLRELFKDEV 368

Query: 178 RSFLLQRNISW 188
           R    +  I  
Sbjct: 369 RKVGEELGIPH 379


>gi|256810146|ref|YP_003127515.1| exsB protein [Methanocaldococcus fervens AG86]
 gi|256793346|gb|ACV24015.1| exsB protein [Methanocaldococcus fervens AG86]
          Length = 232

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS    +   ++         + +AI+ ++  ++  K E+     +C  L I H 
Sbjct: 7  LSGGLDSTVSTLIAKNL-------GYEITAITFNYG-QKAVKREINASKKICEILDINHI 58

Query: 86 VVS 88
          VV 
Sbjct: 59 VVD 61


>gi|229010736|ref|ZP_04167933.1| hypothetical protein bmyco0001_11910 [Bacillus mycoides DSM 2048]
 gi|228750410|gb|EEM00239.1| hypothetical protein bmyco0001_11910 [Bacillus mycoides DSM 2048]
          Length = 223

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 13 VRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
          +  +     ++V  SGG DS   L  A+            +  A++ ++  R   K E+ 
Sbjct: 1  MSEMKKEKAVVV-FSGGQDSTTCLFWAIQQFE--------EVEAVTFNYNQRH--KLEID 49

Query: 72 YVSDVCSRLRIAHSVVS 88
             ++   L I H+++ 
Sbjct: 50 CAVEIAKELGIKHTILD 66


>gi|120536829|ref|YP_956887.1| hypothetical protein Maqu_4117 [Marinobacter aquaeolei VT8]
 gi|120326663|gb|ABM20972.1| conserved hypothetical protein [Marinobacter aquaeolei VT8]
          Length = 165

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 23/91 (25%)

Query: 15  SLVYPAHILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAIS--VDHCLRETAKDE-- 69
            L    H +VA+SGG DS+  LL  L     +    + K       VD       KDE  
Sbjct: 27  DLHSYDHYIVAISGGKDSVCCLLHLL-----ENGVPRSKIELWHHRVDGG-----KDEPR 76

Query: 70  -------VRYVSDVCSRLRIAHSVVSWKNSK 93
                    Y+  +     +     SWK + 
Sbjct: 77  VWDWPVTDAYLEALARAFELPLY-YSWKVNG 106


>gi|294677198|ref|YP_003577813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter capsulatus SB 1003]
 gi|294476018|gb|ADE85406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodobacter capsulatus SB 1003]
          Length = 354

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 57/208 (27%), Gaps = 52/208 (25%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKDEVRYVSDVCS 78
           SGG DS  +   L     D     ++      DH             A  ++     V  
Sbjct: 2   SGGVDSSVVAAMLKEEGYDVIGVTLQLY----DHG--AALAKKGACCAGQDIHDARRVAE 55

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYAL----------------ISEHAKTINATLI 122
            +   H V+ ++N+  +  +   A                       + E A+ ++A  +
Sbjct: 56  AMNFPHYVLDYENTFREAVIEEFADAYLAGATPVPCIRCNERVKFKDLLETARDLDADCM 115

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLNLWISRPFLRC 172
            T H             QR     G  L    D +            +   ++  P    
Sbjct: 116 ATGH-----------YIQRKLGAHGPELHSAADPMRDQSYFLFSTTPEQLAFLRFPLGHL 164

Query: 173 -RREDIRSFLLQRNISWCEDPSNTDDRF 199
             + + R    +  +   + P + D  F
Sbjct: 165 PSKAETRKLAARFGLIVADKPDSQDICF 192


>gi|288818468|ref|YP_003432816.1| queuosine biosynthesis protein [Hydrogenobacter thermophilus
          TK-6]
 gi|288787868|dbj|BAI69615.1| queuosine biosynthesis protein [Hydrogenobacter thermophilus
          TK-6]
 gi|308752058|gb|ADO45541.1| exsB protein [Hydrogenobacter thermophilus TK-6]
          Length = 214

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +LV +SGG DS  LL      LS + F KI   AIS D+  R   + E++Y  D+    +
Sbjct: 4  VLVLLSGGMDSATLL-----WLSKKEFDKI--YAISFDYGQRH--RVEIKYAKDLAKMAQ 54

Query: 82 I-AHSVVSW 89
          +  H +V  
Sbjct: 55 VEEHFIVEV 63


>gi|285018226|ref|YP_003375937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Xanthomonas albilineans GPE PC73]
 gi|283473444|emb|CBA15949.1| probable trna
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           protein [Xanthomonas albilineans]
          Length = 397

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 54/208 (25%), Gaps = 52/208 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFS------------AISVD 59
            I+V VSGG DS      L           + +    G                 A +  
Sbjct: 5   RIMVGVSGGVDSSVAAWQLVQQGHTVSGLFMQNWADDGNGDVHDSASIAEDRKPKATTC- 63

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------R 103
              R  A    R    VC  L I           W+          AA           R
Sbjct: 64  ---RAEADR--RDAVAVCGMLGIPFHFRDFSKEYWQGVFAHFLAEYAAGRTPNPDVLCNR 118

Query: 104 EARYALISEHAKTINATLIMTAHTFD----DQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
           E ++    + A+ + A  I T H       D+     +R      ++   L  +    L 
Sbjct: 119 EVKFKHFLDAARDLGAERIATGHYARVAFVDRR-WRLLRGLDRNKDQSYFLHQLGQAQLA 177

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS 187
                   P     +E +R    Q  + 
Sbjct: 178 AT----LFPVGELPKEQVRRIARQAGLP 201


>gi|307103568|gb|EFN51827.1| hypothetical protein CHLNCDRAFT_139672 [Chlorella variabilis]
          Length = 417

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 16/85 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--------- 67
             P  + + +SGG DS   L  L +     +   ++          +E  +         
Sbjct: 50  AAPLTVALLLSGGVDSSLALHLLVAAGHRVTAFYLQIW-------FQEDFRNFWGACPWE 102

Query: 68  DEVRYVSDVCSRLRIAHSVVSWKNS 92
           +++ Y   VC RL +   VV     
Sbjct: 103 EDLEYCRAVCERLGVELQVVPLTEQ 127


>gi|302527702|ref|ZP_07280044.1| sulfate adenylyltransferase subunit 2 [Streptomyces sp. AA4]
 gi|302436597|gb|EFL08413.1| sulfate adenylyltransferase subunit 2 [Streptomyces sp. AA4]
          Length = 305

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 11/128 (8%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLR 63
           E+V  F   +  +   +L+  SGG DSM +L              + F  + VD  H   
Sbjct: 20  EAVHVFREVAATFERPVLL-FSGGKDSMVMLHVAAKAF---WPAPLPFPVMHVDTGHNFD 75

Query: 64  E--TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           E    +DEV  V+    RL +A         +      A     + A +    +      
Sbjct: 76  EVIQFRDEV--VARYGLRLLVASVQDDIDAGRVVEDPKAGRNRLQTATLLRGIRENGFDA 133

Query: 122 IMTAHTFD 129
           +      D
Sbjct: 134 VFGGARRD 141


>gi|229825220|ref|ZP_04451289.1| hypothetical protein GCWU000182_00572 [Abiotrophia defectiva ATCC
          49176]
 gi|229790592|gb|EEP26706.1| hypothetical protein GCWU000182_00572 [Abiotrophia defectiva ATCC
          49176]
          Length = 537

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 4  SPIESVRFFVRSLVYPAHI--LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
            IE ++  +R+L     I  ++  SGG DS   L  +   L +    K+    + V
Sbjct: 10 DKIEGLKDTIRNLYLADDIPWVIGYSGGKDSTATLQLVWYALRELPAEKLT-KVVHV 65


>gi|67458609|ref|YP_246233.1| trans-regulatory protein ExsB [Rickettsia felis URRWXCal2]
 gi|75536925|sp|Q4UMZ0|QUEC_RICFE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|67004142|gb|AAY61068.1| Trans-regulatory protein ExsB [Rickettsia felis URRWXCal2]
          Length = 224

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA-H 84
          VSGG+DS  +L     +         +  A+S ++  R  A  E+R V ++     +  H
Sbjct: 8  VSGGADSATVLAIAREM-------GYEIHAMSFNYGQRNNA--ELRKVKELIKEYNVKQH 58

Query: 85 SVVSWKNSKPQTGL 98
           +V           
Sbjct: 59 KIVYIDLRAFGGSA 72


>gi|262276498|ref|ZP_06054307.1| GMP synthase [glutamine-hydrolyzing] [Grimontia hollisae CIP
           101886]
 gi|262220306|gb|EEY71622.1| GMP synthase [glutamine-hydrolyzing] [Grimontia hollisae CIP
           101886]
          Length = 525

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 59/214 (27%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS---------------- 47
           S IE     ++  V    +++ +SGG DS  + + +H  + D+                 
Sbjct: 212 SIIEDAIARIKEQVGDDEVILGLSGGVDSSVVAMLIHRAIGDKLTCVFVDNGLLRLNEAQ 271

Query: 48  ------FGKIKFSAISVDHCLRETAKDEVRYVSDV-------CSRLRIAHSVVSWKNSKP 94
                       + I VD         E R++S +         R +I H  V   + + 
Sbjct: 272 QVMEMFGDHFGLNIIHVD--------AEERFLSALEGISDPEEKRKKIGHVFVDVFDEES 323

Query: 95  QTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC 154
           +                   K  NA  +     + D +E+    + +      +      
Sbjct: 324 K-------------------KLKNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNV 361

Query: 155 DTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
             +  D+ + +  P     ++++R   L+  + +
Sbjct: 362 GGLPDDMEMGLVEPLKELFKDEVRKIGLELGLPY 395


>gi|168182490|ref|ZP_02617154.1| protein ExsB [Clostridium botulinum Bf]
 gi|237794900|ref|YP_002862452.1| exsB protein [Clostridium botulinum Ba4 str. 657]
 gi|259551497|sp|C3KVW4|QUEC_CLOB6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|182674375|gb|EDT86336.1| protein ExsB [Clostridium botulinum Bf]
 gi|229261676|gb|ACQ52709.1| exsB protein [Clostridium botulinum Ba4 str. 657]
          Length = 219

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          I+V  SGG DS   L  A             +  A+S D    H L      E+    D+
Sbjct: 7  IVV-FSGGQDSTTCLFWAKKKYK--------EVIAVSFDYNQKHKL------ELECAKDI 51

Query: 77 CSRLRIAHSVVS 88
          C +  I H ++ 
Sbjct: 52 CKKYNIEHKILD 63


>gi|167854995|ref|ZP_02477769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parasuis 29755]
 gi|219870378|ref|YP_002474753.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus parasuis SH0165]
 gi|167853843|gb|EDS25083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parasuis 29755]
 gi|219690582|gb|ACL31805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parasuis SH0165]
          Length = 383

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 33/135 (24%), Gaps = 36/135 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++  +SGG DS      L           +K               D+  Y     
Sbjct: 22  AKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAA 71

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-----------------ALIS 111
                  VC +L I    +++              E +                  A + 
Sbjct: 72  DLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLE 131

Query: 112 EHAKTINATLIMTAH 126
             A+ + A  I T H
Sbjct: 132 YAAEDLGANFIATGH 146


>gi|54308541|ref|YP_129561.1| hypothetical protein PBPRA1348 [Photobacterium profundum SS9]
 gi|46912970|emb|CAG19759.1| conserved hypothetical protein [Photobacterium profundum SS9]
          Length = 405

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 4  SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
            +++ R  +  L     HI V+ SGG DS  LL  +  +   R   ++    + VD
Sbjct: 9  DVVQAARERIHILFDEFEHIYVSFSGGKDSGVLLHLV--IEEARKRNRLPVDVLIVD 63


>gi|218884778|ref|YP_002429160.1| NAD+ synthetase [Desulfurococcus kamchatkensis 1221n]
 gi|218766394|gb|ACL11793.1| NAD+ synthetase [Desulfurococcus kamchatkensis 1221n]
          Length = 280

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 65/181 (35%), Gaps = 30/181 (16%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALH-SVLSDRSFGKIKFSAISVDHCLRETAKD 68
           ++F  S    A  ++ +SGG DS   L  L  +V SDR  G I           R T  +
Sbjct: 31  KYFNDSGAKKA--IIGLSGGLDSSVTLRLLVDAVGSDRVIGVIMPDT-------RVTPTE 81

Query: 69  EVRYVSDVCSRLRIAHSVVSWK------------NSKPQTGLMAAAREARYALISEHAKT 116
           +V    ++   L + + ++               +   +          R  ++   A  
Sbjct: 82  DVDDAVELSRDLGVEYMIIPIDDVVNSYRVIPGFDVNEKLSTGNLRARIRMNILYYLANK 141

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKG---MGLSGMCDTILYDLNLWISRPFLRCR 173
           +N  +I T     D+ E + +     Y + G   + ++ +  T + ++  ++  P     
Sbjct: 142 LNGVVIGTG----DRSE-ILLGYFTKYGDGGVDVLPIACLYKTQVKEMGRYLGLPVRITS 196

Query: 174 R 174
           +
Sbjct: 197 K 197


>gi|118602883|ref|YP_904098.1| GMP synthase [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|259647699|sp|A1AXH0|GUAA_RUTMC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|118567822|gb|ABL02627.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 521

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 21/289 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + I  +   ++  +  A+IL+ +SGG DS+ + + L   +        + + + VD+  L
Sbjct: 208 NIIAKLVQNLKDQIGNANILLGLSGGVDSLVVAVLLQQAVGK------QLTCVFVDNGLL 261

Query: 63  RETAKDEVR--YVSDV------CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHA 114
           R    +EV   +  ++       +  +          ++P+       R        E  
Sbjct: 262 RFNEGNEVMQIFAQNMDMKVIRANAHK-KFYDALLNENEPEAKRKIIGRAFIEVFEEEAK 320

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K  N   +     + D +E+      +    K +        +  DL   +  P     +
Sbjct: 321 KLDNIQFLAQGTIYPDVIES---ADAKYGKAKLIKSHHNVGGLPNDLQFKLVEPLKELFK 377

Query: 175 EDIRSFLLQRNI-SWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA 233
           +++R   ++ +I                VR+   V+    + L      F D  +  NN 
Sbjct: 378 DEVRKISVKLSIPPHIIYRHPFPGPGLGVRILGQVKQEYANILRQADAIFMD-ELHKNNL 436

Query: 234 VAMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
              +   +        + I+ D    D  +    +     +      LP
Sbjct: 437 YDTVNQAFAVFLPIKSVGITGDERRYDYVIALRAVETIDFMTARWARLP 485


>gi|332879363|ref|ZP_08447060.1| phosphoadenosine phosphosulfate reductase family protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682783|gb|EGJ55683.1| phosphoadenosine phosphosulfate reductase family protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 432

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 11/88 (12%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCSR 79
           + V+ SGG DS  LL      L     G+ K     +D+     A  +    YV    + 
Sbjct: 25  VYVSFSGGKDSGVLLNLCIDYLRKYEPGR-KLGVFHMDY----EAQYRQTTEYVEQTMAS 79

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAR 103
               L + H  V +K S   +   +  R
Sbjct: 80  HPDILEVYHCCVPFKVSTCTSMYQSYWR 107


>gi|325291197|ref|YP_004267378.1| exsB protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966598|gb|ADY57377.1| exsB protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 231

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V +SGG DS      + +VL+ R FG     A+++ +  ++ A+ E++    VC  L I
Sbjct: 8  VVLLSGGLDST-----ICAVLACREFGAENVIALTLFYG-QKHAR-EIKSAEAVCEHLGI 60

Query: 83 A-HSVVSWKNSKPQTG 97
            H   S  +     G
Sbjct: 61 PEHYTESLPDIFRGAG 76


>gi|310640610|ref|YP_003945368.1| atpase, confers aluminum resistance [Paenibacillus polymyxa SC2]
 gi|309245560|gb|ADO55127.1| Putative ATPase, confers aluminum resistance [Paenibacillus
          polymyxa SC2]
          Length = 227

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS   L       ++          ++ D+  R   K E+   + + S L 
Sbjct: 8  VVV-FSGGQDSTTCLFWAKKHFAE-------VETVTFDYGQRH--KQEIEVAAGIASELG 57

Query: 82 IAHSVVS 88
          +  +V+ 
Sbjct: 58 VPQTVLD 64


>gi|319427115|gb|ADV55189.1| GMP synthase, large subunit [Shewanella putrefaciens 200]
          Length = 525

 Score = 41.4 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  +    +++ +SGG DS  + + LH  +        K + + VD+ L 
Sbjct: 212 SIIEDAIERLKKQIGDDEVILGLSGGVDSSVVAMLLHRAI------GTKLTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +       +    V  +N         A  EA+  +I           
Sbjct: 266 RLN---EAAQVMEMFGDHFGLNIIHVDAENRFLDAMKGVADPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 SKKCANAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMELGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|304570650|ref|YP_832601.2| sulfate adenylyltransferase subunit 2 [Arthrobacter sp. FB24]
          Length = 315

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V     PA +    SGG DS+ +L            GK+ F  + VD  H 
Sbjct: 30  EAIHIIREVVAEFEKPALL---FSGGKDSVVMLHLATKAF---WPGKVPFPVLHVDTGHN 83

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
             E      R V     RL +   V S +       L   A
Sbjct: 84  FPEVIDFRDRTV----ERLGLKLVVGSVQEFIDSGELAERA 120


>gi|262306007|gb|ACY45596.1| gln amidotransferase [Abacion magnum]
          Length = 197

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 9/81 (11%)

Query: 12  FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEV 70
           +++  V    +L+ +SGG DS      LH  L D      +  A+ +D+   R++   E 
Sbjct: 36  YIQETVGDNKVLMLLSGGVDSTVCAALLHKALKDD-----QVIALHIDNGFMRKS---ES 87

Query: 71  RYVSDVCSRLRIAHSVVSWKN 91
           + V    +++ +   V++ K+
Sbjct: 88  QQVVASLNKIGLKVEVINCKH 108


>gi|227502742|ref|ZP_03932791.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium accolens ATCC 49725]
 gi|227076472|gb|EEI14435.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Corynebacterium accolens ATCC 49725]
          Length = 511

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 26/180 (14%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKD--EVRYVSDVCSR 79
           + A+SGG DS      +   + DR       + + VDH  LR   ++  E  +V+   ++
Sbjct: 211 ICALSGGVDSAVAAALVQGAIGDR------LTCVFVDHGLLRAGEREQVETDFVASTGAK 264

Query: 80  L-----RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTIN-------ATLIMTAHT 127
           L     R A        S P+    A   E   +     A  ++          ++    
Sbjct: 265 LVTADERSAFLQKLAGVSDPEEKRKAIGAEFIRSFERAVAGVLDDAPAGSTVDYLVQGTL 324

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + D +E+             +        +  D+   +  P     ++++R+   +  + 
Sbjct: 325 YPDVVES-----GGGDGTANIKSHHNVGGLPDDVEFELVEPLRLLFKDEVRAVGRELGLP 379


>gi|255283533|ref|ZP_05348088.1| PP-loop family protein [Bryantella formatexigens DSM 14469]
 gi|255265990|gb|EET59195.1| PP-loop family protein [Bryantella formatexigens DSM 14469]
          Length = 271

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 51/193 (26%), Gaps = 48/193 (24%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR----ETAKDEVR 71
           L     + VA SGG DS           + R+ GK +  A+      R      A  EV 
Sbjct: 23  LQEKGRLAVAYSGGIDS-----HFLLAAALRALGKEQVLAVLC----RGLMMPEA--EVC 71

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATLI 122
               +   +   + ++             A  + R              E A     T +
Sbjct: 72  EAERLLKDMGADYRILEVDVLAI---PEFAENDKRRCYFCKKHLMSRIKECAAENGFTAV 128

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSF 180
                 DD                  G     +       + I  P       ++DIR+ 
Sbjct: 129 ADGKNADD------------AGVYRPGAQAAEE-------IGIISPLFESGFTKQDIRTC 169

Query: 181 LLQRNISWCEDPS 193
             +  IS    PS
Sbjct: 170 AREWGISIWNKPS 182


>gi|205822245|sp|A2CB44|MNMA_PROM3 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 409

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 59/216 (27%), Gaps = 44/216 (20%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDH 60
            +      ++       + V +SGG DS      L           +       A     
Sbjct: 20  AVAKALTRLQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSGKGACC--- 76

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAA------------RE 104
                  D +   + +C +L+I H VV    +++       +                R 
Sbjct: 77  ------SDGLIDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRS 130

Query: 105 ARYALISEHA-KTINATLIMTAH-----TFDD----QL----ETVYMRSQRDYAEKGMGL 150
            ++A +   A K      + T H       +D    Q      +   +  R   +     
Sbjct: 131 VKFAAMLSWAEKERQLHRVATGHYARIRHREDPEPQQALPGDSSGRHQLLRGLDQNKDQS 190

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             + D +  D+   +  P     + + R    +  +
Sbjct: 191 YFLYD-LSQDVLAKVIFPLGELTKAETRQEAERYGL 225


>gi|149191046|ref|ZP_01869306.1| predicted aluminum resistance protein [Vibrio shilonii AK1]
 gi|148835074|gb|EDL52051.1| predicted aluminum resistance protein [Vibrio shilonii AK1]
          Length = 228

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     + ++L
Sbjct: 5  VVV-FSGGQDSTTCLVQALEQYD--------EVHAITFDYGQRH--KLEIEVAEALANKL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 NVKAHKV 60


>gi|124023662|ref|YP_001017969.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963948|gb|ABM78704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 431

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 59/216 (27%), Gaps = 44/216 (20%)

Query: 5   PIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF----SAISVDH 60
            +      ++       + V +SGG DS      L           +       A     
Sbjct: 42  AVAKALTRLQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSGKGACC--- 98

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAA------------RE 104
                  D +   + +C +L+I H VV    +++       +                R 
Sbjct: 99  ------SDGLIDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRS 152

Query: 105 ARYALISEHA-KTINATLIMTAH-----TFDD----QL----ETVYMRSQRDYAEKGMGL 150
            ++A +   A K      + T H       +D    Q      +   +  R   +     
Sbjct: 153 VKFAAMLSWAEKERQLHRVATGHYARIRHREDPEPQQALPGDSSGRHQLLRGLDQNKDQS 212

Query: 151 SGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             + D +  D+   +  P     + + R    +  +
Sbjct: 213 YFLYD-LSQDVLAKVIFPLGELTKAETRQEAERYGL 247


>gi|332159234|ref|YP_004424513.1| Putative thiamine biosynthesis protein THII [Pyrococcus sp. NA2]
 gi|331034697|gb|AEC52509.1| Putative thiamine biosynthesis protein THII [Pyrococcus sp. NA2]
          Length = 363

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 48/193 (24%)

Query: 23  LVAV-SGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           +VA+ SGG DS +   + L            +  A+  D      AK  V  V ++ S  
Sbjct: 168 VVALLSGGIDSPVAAFLMLKR--------GAEVVALHFDQGT--NAKAVVEKVVEILSEY 217

Query: 81  R--------------IAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
                          +   V +  + K +       + A     +E A+ I A  I+T  
Sbjct: 218 SPDPIELIVENHFEVLKPYVQALTDIKRREWTCVICKIAMLKRAAEIAREIGALGIVTG- 276

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN- 185
              D          +  ++    L     +I +     I RP +   +E+I +   +   
Sbjct: 277 ---DS-------LGQVASQTLSNLYFETVSINFP----IYRPLIGFDKEEIVNIAKKIGT 322

Query: 186 ------ISWCEDP 192
                   +CE P
Sbjct: 323 YEAFLEFPYCECP 335


>gi|325090772|gb|EGC44082.1| GMP synthase [Ajellomyces capsulatus H88]
          Length = 903

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 14/85 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I+ +R  V        ++ AVSGG DS      +   + +R      F A+ VD+  LR 
Sbjct: 225 IDRIRKLV---GEKGQVIGAVSGGVDSTVAAKLMQEAIGNR------FHAVLVDNGVLRL 275

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVS 88
               E   V + +   L I  +VV 
Sbjct: 276 N---EAAIVKETLTKHLGINLTVVD 297


>gi|296241950|ref|YP_003649437.1| NH(3)-dependent NAD(+) synthetase [Thermosphaera aggregans DSM
           11486]
 gi|296094534|gb|ADG90485.1| NH(3)-dependent NAD(+) synthetase [Thermosphaera aggregans DSM
           11486]
          Length = 277

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 68/190 (35%), Gaps = 31/190 (16%)

Query: 4   SPIESVRFFVRSLVYP---AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-D 59
             +  ++ FV++ +      +I+V +SGG DS  L   L       S  K K  A+ + D
Sbjct: 14  KALAVIKDFVKNYLETTGARNIIVGLSGGIDSSTLFTVLAE-----SVDKDKIVALILPD 68

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWK------------NSKPQTGLMAAAREARY 107
              R T K++V     +  +  + + V+               +   +  +       R 
Sbjct: 69  --TRVTPKEDVDDAVSLAEKYGVRYYVIEIDRIIDSFSIIPGFDINGKLDIGNLRARVRM 126

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKG---MGLSGMCDTILYDLNLW 164
           A++  +A   N  +  T     D+ E + +     Y + G   + L  +  T +  L   
Sbjct: 127 AIMYYYANRYNGIVAGT----SDRSE-LLIGYFTKYGDGGADILPLGCLFKTQVRMLGRH 181

Query: 165 ISRPFLRCRR 174
           +  P     +
Sbjct: 182 LGLPKRIIEK 191


>gi|294496221|ref|YP_003542714.1| exsB protein [Methanohalophilus mahii DSM 5219]
 gi|292667220|gb|ADE37069.1| exsB protein [Methanohalophilus mahii DSM 5219]
          Length = 228

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +S G DS+  L    +         ++   ++ D+  +  A  E+ +   +C+   I H 
Sbjct: 9  LSSGLDSLASLAIASA------KYDVQIG-LTFDYG-QLAADAEIDHSRQICAHYGIPHR 60

Query: 86 VVSWKNSK 93
          V+S    K
Sbjct: 61 VISLDWMK 68


>gi|225561330|gb|EEH09610.1| GMP synthase [Ajellomyces capsulatus G186AR]
          Length = 896

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 14/85 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I+ +R  V        ++ AVSGG DS      +   + +R      F A+ VD+  LR 
Sbjct: 225 IDRIRKLV---GEKGQVIGAVSGGVDSTVAAKLMQEAIGNR------FHAVLVDNGVLRL 275

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVS 88
               E   V + +   L I  +VV 
Sbjct: 276 N---EAAIVKETLTKHLGINLTVVD 297


>gi|123965271|ref|YP_001010352.1| GMP synthase [Prochlorococcus marinus str. MIT 9515]
 gi|226739663|sp|A2BTY4|GUAA_PROM5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|123199637|gb|ABM71245.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 528

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           ++  V    +L+A+SGG DS  L   L+  +  +
Sbjct: 218 IKEQVGDKKVLLALSGGVDSSTLAFLLNKAIGKQ 251


>gi|308809381|ref|XP_003082000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
           [Ostreococcus tauri]
 gi|116060467|emb|CAL55803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS)
           [Ostreococcus tauri]
          Length = 467

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 60/219 (27%), Gaps = 56/219 (25%)

Query: 8   SVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK 67
           ++R        P  + V +SGG DS   L  L +   +     ++          +E  +
Sbjct: 72  ALRLAEPESTKPLRVAVLLSGGVDSSVALALLRAAGHECRAFYLQIW-------FQEDFR 124

Query: 68  ---------DEVRYVSDVCSRLRIAHSVVSWKNS----KPQTGLMAAAR----------- 103
                    +++R    VC+R+ +    V   ++         +    R           
Sbjct: 125 NTWEECPWEEDLRVAEGVCARVGVELETVPLTDAYWNLVVSDSVEEIRRGRTPNPDVLCN 184

Query: 104 -EARYALISEHAKTIN---ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
              ++    E     +      + + H             +RD A  G     M      
Sbjct: 185 SRVKFGAFREWLAKAHPGEFDRVASGHYA---------AVERD-AVTGEASLVMSGDAFK 234

Query: 160 DLNLWISR-----------PFLRCRREDIRSFLLQRNIS 187
           D   +++            P     + DIRS      + 
Sbjct: 235 DQTYFLANLTQEQLRAVSFPVGGMPKADIRSLATSAELP 273


>gi|93005607|ref|YP_580044.1| ExsB [Psychrobacter cryohalolentis K5]
 gi|110816247|sp|Q1QCP3|QUEC_PSYCK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|92393285|gb|ABE74560.1| ExsB [Psychrobacter cryohalolentis K5]
          Length = 259

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V +SGG DS+  L    +  +         +A+S D+  R  ++        +     +
Sbjct: 29 VVLLSGGLDSVTCLYWAKARYA-------SVTAVSFDYGQRHNSELVAA--KAIAETAGV 79

Query: 83 AHSVVSWKNSKPQTG 97
           H ++    ++    
Sbjct: 80 NHRIIDIDIAQLGGS 94


>gi|154251557|ref|YP_001412381.1| NAD+ synthetase [Parvibaculum lavamentivorans DS-1]
 gi|154155507|gb|ABS62724.1| NAD+ synthetase [Parvibaculum lavamentivorans DS-1]
          Length = 554

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           ++L+ ++ +R +V+   +P  +++ +SGG DS     AL + ++  + G  K   + + +
Sbjct: 268 LYLAVVQGLRDYVKKNRFPG-VVLGLSGGIDS-----ALVAAIAVDALGADKVHCVMLPY 321

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
                 +  +    + +   L + + VV  +  
Sbjct: 322 RYTSSESLTDAEACAKL---LGVRYDVVPIEEP 351


>gi|99014555|emb|CAK22274.1| putative GMP synthase [Chenopodium rubrum]
          Length = 284

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E ++    ++    H++ A+SGG DS      +H  + DR         I VD+ L
Sbjct: 186 EEIKVIKETVGPDDHVICALSGGVDSTVAATLVHKAIGDR------LHCIFVDNGL 235


>gi|317033624|ref|XP_001395216.2| hypothetical protein ANI_1_1396104 [Aspergillus niger CBS 513.88]
          Length = 664

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             PIES           A ++   SGG DS  LL+ L  +      G     A++VD   
Sbjct: 28  RRPIESFGHLADFDRKDAPVVTMFSGGLDSTYLLLKLQQL------GYTNIHAVAVDVG- 80

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104
              A  +   ++   +    +   +  +    + G+M A R 
Sbjct: 81  ---APVDEEGLTKHAAHFGASFKCLDGRELFVKDGVMPAIRA 119


>gi|291519700|emb|CBK74921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 354

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 64/195 (32%), Gaps = 48/195 (24%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS--------VDHCLRETAK----DEV 70
           L+A+SGG DS    + +            +    +        VD  L +T+     D+V
Sbjct: 4   LIAMSGGVDSSVAALLMKE-------NGYECIGCTMKLYGNEDVD--LSDTSTCCSLDDV 54

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAARE-ARYALISEHA 114
           +   DV  +L + H   ++K+   +                       +  ++  +   A
Sbjct: 55  QDAKDVARKLGMLHYTWNFKDQFKEKVIDNFTYCYEHAMTPNPCIECNKHLKFCELYRRA 114

Query: 115 KTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           K +    I+T H       D+  +   ++ +    ++   L  M    L   +     P 
Sbjct: 115 KELGCDKIVTGHYARVRKCDNGYQ--LLKGKDASKDQSYVLYSMTQDELAHTDF----PL 168

Query: 170 LRCRREDIRSFLLQR 184
               +++IR    + 
Sbjct: 169 GEYSKDEIRRIAEKN 183


>gi|237711510|ref|ZP_04541991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
 gi|237726033|ref|ZP_04556514.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. D4]
 gi|265752935|ref|ZP_06088504.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
 gi|229435841|gb|EEO45918.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides dorei 5_1_36/D4]
 gi|229454205|gb|EEO59926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides sp. 9_1_42FAA]
 gi|263236121|gb|EEZ21616.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA]
          Length = 351

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++       +L+ +SGG+DS    + L     + +    +F              ++  Y
Sbjct: 1   MKEAEPNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFY----------EKGNDTEY 50

Query: 73  VSD---VCSRLRIAHSVVSWKNSKPQT------GLMAAARE----------ARYALISEH 113
           + D   +C RL I H     + +  +T          A              ++ L+   
Sbjct: 51  LEDARTLCERLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRI 110

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFL 170
           +  +      T H    +L   Y            +   L G+   IL  +      P  
Sbjct: 111 SDEMGIYHFATGHYVRRRLINGYYHITTGADPDKDQSFFLWGLPQEILQRM----LLPMG 166

Query: 171 RCRREDIRSFLLQRN 185
              +  +R    +R 
Sbjct: 167 NLTKARVREIAAERG 181


>gi|184200183|ref|YP_001854390.1| sulfate adenylyltransferase subunit 2 [Kocuria rhizophila DC2201]
 gi|183580413|dbj|BAG28884.1| sulfate adenylyltransferase subunit 2 [Kocuria rhizophila DC2201]
          Length = 311

 Score = 41.4 bits (96), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRE 64
           ES+  F  +       ++  SGG DS+ +L              I F  + VD  H    
Sbjct: 26  ESIHIFRETAAEGERPVLLFSGGKDSVVMLHLAAKAF---WPAPIPFPVLHVDTGHNF-- 80

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKN 91
              + + +      RL I   V S ++
Sbjct: 81  --PEVLEFRDRTVERLHIRLEVASVQD 105


>gi|300694667|ref|YP_003750640.1| immunoglobulin-binding regulator (part 1) [Ralstonia solanacearum
           PSI07]
 gi|299076704|emb|CBJ36043.1| immunoglobulin-binding regulator (part 1) [Ralstonia solanacearum
           PSI07]
          Length = 474

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 7   ESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--------SAIS 57
           E+ +  +R +      + VA SGG DS   L     V  +   G +             +
Sbjct: 70  EAAKARLRLVFAHFPQVCVAFSGGKDSSVTLHLALEVAKEMGHGPVHVLFLDLEGQYHAT 129

Query: 58  VDH 60
           +DH
Sbjct: 130 IDH 132


>gi|291276778|ref|YP_003516550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter mustelae 12198]
 gi|290963972|emb|CBG39811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter mustelae 12198]
          Length = 342

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 36/127 (28%)

Query: 24  VAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VSD 75
           VA+  SGG DS      L     +     +K                E ++         
Sbjct: 3   VALLMSGGVDSSYSAYLLKKQGYEVKGFYLKLH------------DKEEKHQVFLKNCHK 50

Query: 76  VCSRLRIAHSVVSWKNSKPQT--GLMAAAREA--------------RYALISEHAKTINA 119
           V   L+I   V+  K    Q        A +               ++ L  + A     
Sbjct: 51  VAQNLQIDFQVIEAKEEFRQKVYNEFVNAYQRGETPNPCALCNPLMKFGLALDIALQQGC 110

Query: 120 TLIMTAH 126
             I T H
Sbjct: 111 ERIATGH 117


>gi|270159635|ref|ZP_06188291.1| GMP synthase [Legionella longbeachae D-4968]
 gi|289165579|ref|YP_003455717.1| GMP synthetase (glutamine-hydrolyzing) [Legionella longbeachae
           NSW150]
 gi|269987974|gb|EEZ94229.1| GMP synthase [Legionella longbeachae D-4968]
 gi|288858752|emb|CBJ12657.1| putative GMP synthetase (glutamine-hydrolyzing) [Legionella
           longbeachae NSW150]
          Length = 525

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R+ V    +L+ +SGG DS  +   LH  +        +   + VD   LR    DEV
Sbjct: 220 IRAQVGTEKVLLGLSGGVDSSVVAALLHKAIGK------QLICVFVDTGLLRIHEADEV 272


>gi|258543643|ref|YP_003189076.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634721|dbj|BAI00697.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637777|dbj|BAI03746.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640831|dbj|BAI06793.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643886|dbj|BAI09841.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646941|dbj|BAI12889.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649994|dbj|BAI15935.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652984|dbj|BAI18918.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656038|dbj|BAI21965.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 360

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 44/181 (24%), Gaps = 45/181 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS---------AISVDHCLRETAKDEVR 71
            ILVA+SGG DS  +   L     +     ++           A          A  ++R
Sbjct: 2   RILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGAAKKGACC--------AGQDIR 53

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS----EHAKTINATLIMTAHT 127
               V   L   H V+  +     + +   A    YA         A             
Sbjct: 54  DARAVADLLGFPHYVIDAERRFKDSVIERFADA--YASGETPVPCVACNQGVKF------ 105

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP----------FLRCRREDI 177
                 T  +   R+     M        +       + RP               R+ +
Sbjct: 106 ------TDLLGLAREIGADAMATGHYVRRVEGPDGAELHRPCDEDRDQSWFLFATTRDQL 159

Query: 178 R 178
            
Sbjct: 160 E 160


>gi|312148210|gb|ADQ30869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi JD1]
          Length = 355

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   ++   S+     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWV--------EDELSYIGNCPWQEDL 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------------KPQTGLMAAAREARYALISEH 113
            YV  +C++  + + +++++                    P   +    R    A   + 
Sbjct: 54  NYVEAICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKI 113

Query: 114 AKTINATLIMTAHTFDDQL-ET-VYMRSQRDYAE-KGMGLSGMCDTILYDLNLWISRPFL 170
                  L++T H    Q+ E+   ++  +D  + +   LS +    +      +  P  
Sbjct: 114 --NSQYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQMSK----LYFPLG 167

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R      N+ 
Sbjct: 168 TLLKSEVRQIAKNINLP 184


>gi|257453857|ref|ZP_05619135.1| ExsB protein [Enhydrobacter aerosaccus SK60]
 gi|257448784|gb|EEV23749.1| ExsB protein [Enhydrobacter aerosaccus SK60]
          Length = 236

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V +SGG DS+  L    +            +A+S ++  R  +  E+     + +  ++
Sbjct: 11  VVLLSGGLDSVTCLYWAKA-------NYTNVTAVSFNYGQRHNS--ELNAAKKIAATAQV 61

Query: 83  AHSVVSWKNSKPQTGLMAAA 102
            H ++    ++     +  A
Sbjct: 62  NHRIIDIDLAQLGGSALTDA 81


>gi|196019728|ref|XP_002119029.1| hypothetical protein TRIADDRAFT_35073 [Trichoplax adhaerens]
 gi|190577245|gb|EDV18485.1| hypothetical protein TRIADDRAFT_35073 [Trichoplax adhaerens]
          Length = 345

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 56/185 (30%), Gaps = 20/185 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +++ +    +++ +SGG DS  +   L+  +        +   I VD+  LR    +EV 
Sbjct: 40  IKAAIGHKKVVLGLSGGVDSTVVATLLNKAIGK------QLYCIFVDNGLLRSNEVEEVE 93

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
               +     +   ++    S          P+       R           +  +   +
Sbjct: 94  --KSLKDNFDLQIRIIDASESFLSELKNVTDPEEKRKIIGRVFIETFQKAIKEIDDVEYL 151

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+    +             +        NL +  P     ++++R    
Sbjct: 152 AQGTIYPDVIESA--ATSTGKKVTIKSHHNVGGLPEDMGNLKLIEPLKLLFKDEVRRLGK 209

Query: 183 QRNIS 187
           +  + 
Sbjct: 210 ELGVP 214


>gi|153855260|ref|ZP_01996426.1| hypothetical protein DORLON_02440 [Dorea longicatena DSM 13814]
 gi|149752259|gb|EDM62190.1| hypothetical protein DORLON_02440 [Dorea longicatena DSM 13814]
          Length = 86

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSD-----RSFGKIKFSAISVDH----CLRETAKDE 69
             ++V +SGG DS      L +   D         + +  A   +H     L   A D+
Sbjct: 3  KKKVVVGMSGGVDSSVAAWLLKNQGYDVIGVTMQIWQDEEEAAMEEHGGCCGLS--AVDD 60

Query: 70 VRYVSDVCSRLRIAHSVVSWKNSKPQT 96
           R V    + L I + V+++K    + 
Sbjct: 61 ARRV---AAALDIPYYVMNFKKEFKRK 84


>gi|116334419|ref|YP_795946.1| PP family ATPase [Lactobacillus brevis ATCC 367]
 gi|116099766|gb|ABJ64915.1| ATP-utilizing enzyme of the PP-loop superfamily [Lactobacillus
           brevis ATCC 367]
          Length = 278

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 21/122 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDV 76
            ++V  SGG DS      L   L       +              +      E      +
Sbjct: 20  RVVVGFSGGIDSTV---VLKEALDVLGRDNVLAVVA--------NSELFLDAEYEMAGQL 68

Query: 77  CSRL-----RIAHSVVSWKNSKPQTGLM-AAAREARYALISEHAKTINATLIMTAHTFDD 130
              +      I    ++    K  T     A ++  Y  +++ A   NA  ++     DD
Sbjct: 69  AKGMGAQVTGIQLDYLANDQIKHNTPESWYAMKQMFYQAMTQVATQFNADAVLDGMIMDD 128

Query: 131 QL 132
             
Sbjct: 129 NA 130


>gi|15595027|ref|NP_212816.1| tRNA-specific 2-thiouridylase MnmA [Borrelia burgdorferi B31]
 gi|223889488|ref|ZP_03624074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 64b]
 gi|226321380|ref|ZP_03796907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi Bol26]
 gi|8134738|sp|O51625|MNMA_BORBU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|2688619|gb|AAC67035.1| conserved hypothetical protein [Borrelia burgdorferi B31]
 gi|223885174|gb|EEF56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 64b]
 gi|226233176|gb|EEH31928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi Bol26]
          Length = 355

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 66/197 (33%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   ++   S+     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWV--------EDELSYIGNCPWQEDL 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------------KPQTGLMAAAREARYALISEH 113
            YV  +C++  + + +++++                    P   +    R    A   + 
Sbjct: 54  NYVEAICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKI 113

Query: 114 AKTINATLIMTAHTFDDQL-ET-VYMRSQRDYAE-KGMGLSGMCDTILYDLNLWISRPFL 170
                  L++T H    Q+ E+   ++  +D  + +   LS +    +      +  P  
Sbjct: 114 --NSQYDLVVTGHYAKIQIKESKFLLKQAKDKIKDQSYFLSHLSQKQMSK----LYFPLG 167

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R      N+ 
Sbjct: 168 TLLKSEVRQIAKNINLP 184


>gi|283784270|ref|YP_003364135.1| queuosine biosynthesis protein [Citrobacter rodentium ICC168]
 gi|282947724|emb|CBG87279.1| queuosine biosynthesis protein [Citrobacter rodentium ICC168]
          Length = 231

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ ALH           +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALHQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|239828037|ref|YP_002950661.1| argininosuccinate synthase [Geobacillus sp. WCH70]
 gi|259585361|sp|C5D679|ASSY_GEOSW RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|239808330|gb|ACS25395.1| argininosuccinate synthase [Geobacillus sp. WCH70]
          Length = 402

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 57/192 (29%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S+         L +R +      A  +D         ++ +V +   +
Sbjct: 5   KLVLAYSGGLDTSVA-----IKWLQERGY---DVIACCLDLG----EGKDLDFVKEKALK 52

Query: 80  LR-IAHSVVSWKNS-KPQTGLMAAAREARYA----------------LISEHAKTINATL 121
           +  I   V+  K     +  L+A    A Y                  + E A+   A  
Sbjct: 53  VGAIKSYVIDVKEEFADEYALIALQAHALYEGKYPLVSALSRPLIAKKLVEIAELEGA-- 110

Query: 122 IMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRE 175
           +  AH      +DQ+                           + NL +  P       RE
Sbjct: 111 VAVAHGCTGKGNDQV------------------RFEVSIKALNPNLEVIAPVREWSWSRE 152

Query: 176 DIRSFLLQRNIS 187
           +   +  +  I 
Sbjct: 153 EEIEYAKKHGIP 164


>gi|120598185|ref|YP_962759.1| GMP synthase [Shewanella sp. W3-18-1]
 gi|146293741|ref|YP_001184165.1| GMP synthase [Shewanella putrefaciens CN-32]
 gi|226739732|sp|A4Y8T3|GUAA_SHEPC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739736|sp|A1RHR0|GUAA_SHESW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120558278|gb|ABM24205.1| GMP synthase (glutamine-hydrolyzing) [Shewanella sp. W3-18-1]
 gi|145565431|gb|ABP76366.1| GMP synthase (glutamine-hydrolyzing) [Shewanella putrefaciens
           CN-32]
          Length = 525

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 66/196 (33%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  +    +++ +SGG DS  + + LH  +  +       + + VD+ L 
Sbjct: 212 SIIEDAIERLKKQIGDDEVILGLSGGVDSSVVAMLLHRAIGKK------LTCVFVDNGLL 265

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E   V +       +    V  +N         A  EA+  +I           
Sbjct: 266 RLN---EAAQVMEMFGDHFGLNIIHVDAENRFLDAMKGVADPEAKRKIIGRVFVEIFDEE 322

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+             +        +  D+ L +  P    
Sbjct: 323 SKKCANAKWLAQGTIYPDVIES---AGSATGKAHVIKSHHNVGGLPDDMALGLVEPLREL 379

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 380 FKDEVRKIGLELGLPY 395


>gi|284161201|ref|YP_003399824.1| asparagine synthase [Archaeoglobus profundus DSM 5631]
 gi|284011198|gb|ADB57151.1| asparagine synthase [Archaeoglobus profundus DSM 5631]
          Length = 375

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 23/90 (25%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L  +ES R  +++        +A SGG DS  LL  L+ +             ++     
Sbjct: 141 LRLLESYRSKIKNG------CIAFSGGVDS-SLLAGLYDL---------PLVTVT----- 179

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
              +K+E  +V +   +L     +  +  +
Sbjct: 180 --ASKEEKEWVKECARKLGREIEIYEFDEN 207


>gi|212692213|ref|ZP_03300341.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855]
 gi|212665090|gb|EEB25662.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855]
          Length = 351

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 36/195 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++       +L+ +SGG+DS    + L     + +    +F              ++  Y
Sbjct: 1   MKEAEPNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFY----------EKGNDTEY 50

Query: 73  VSD---VCSRLRIAHSVVSWKNSKPQT------GLMAAARE----------ARYALISEH 113
           + D   +C RL I H     + +  +T          A              ++ L+   
Sbjct: 51  LEDARTLCERLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRI 110

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFL 170
           +  +      T H    +L   Y            +   L G+   IL  +      P  
Sbjct: 111 SDEMGIYHFATGHYVRRRLINGYYHITTGADPDKDQSFFLWGLPQEILQRM----LLPMG 166

Query: 171 RCRREDIRSFLLQRN 185
              +  +R    +R 
Sbjct: 167 NLTKARVREIAAERG 181


>gi|163939247|ref|YP_001644131.1| exsB protein [Bacillus weihenstephanensis KBAB4]
 gi|254764308|sp|A9VKR8|QUEC_BACWK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|163861444|gb|ABY42503.1| exsB protein [Bacillus weihenstephanensis KBAB4]
          Length = 220

 Score = 41.4 bits (96), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+            +  A++ ++  R   K E+    ++   L
Sbjct: 7  VVV-FSGGQDSTTCLFWAIQQFE--------EVEAVTFNYNQRH--KLEIDCAVEIAKEL 55

Query: 81 RIAHSVVS 88
           I H+++ 
Sbjct: 56 GIKHTILD 63


>gi|258423361|ref|ZP_05686252.1| exsB protein [Staphylococcus aureus A9635]
 gi|257846422|gb|EEV70445.1| exsB protein [Staphylococcus aureus A9635]
          Length = 222

 Score = 41.4 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     I+V  SGG DS   L  A       + F +++   ++ ++  R     E+    
Sbjct: 5  LNNEKAIVV-FSGGQDSTTCLFYA------KKQFKEVEL--VTFNYGQRH--DTEIEVAK 53

Query: 75 DVCSRLRIAHSVVS 88
           +     + H V+ 
Sbjct: 54 QIAQDQGMKHHVLD 67


>gi|240274432|gb|EER37948.1| GMP synthase [Ajellomyces capsulatus H143]
          Length = 883

 Score = 41.4 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 14/85 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           I+ +R  +        ++ AVSGG DS      +   + +R      F A+ VD+  LR 
Sbjct: 212 IDRIRKLI---GEKGQVIGAVSGGVDSTVAAKLMQEAIGNR------FHAVLVDNGVLRL 262

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVS 88
               E   V + +   L I  +VV 
Sbjct: 263 N---EAAIVKETLTKHLGINLTVVD 284


>gi|110833586|ref|YP_692445.1| argininosuccinate synthase [Alcanivorax borkumensis SK2]
 gi|119361256|sp|Q0VRM5|ASSY_ALCBS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|110646697|emb|CAL16173.1| argininosuccinate synthase [Alcanivorax borkumensis SK2]
          Length = 407

 Score = 41.4 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 60/192 (31%), Gaps = 43/192 (22%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-----AKDEVRYVS 74
            +++A SGG D S+     +  +        + F+A   D    E      AK E   V 
Sbjct: 6   KVVLAYSGGLDTSV----IVKWLQDTYDCEVVTFTA---DIGQGEEVEPARAKAEAMGVK 58

Query: 75  D-VCSRLRIAHSVVSWKNSKPQTGLMAA--------AREARYALISEHAKTINATLI--- 122
           +     LR                +           AR      + E A+   A  I   
Sbjct: 59  EIYIEDLREEFVRDYVFPMFRANAIYEGEYLLGTSIARPLIAKRLVEIAEETGADAISHG 118

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
            T    +DQ+     R +        G+  +     +DLN           RE + ++  
Sbjct: 119 ATG-KGNDQV-----RFELGAYALAPGIQVIAPWREWDLN----------SREKLMAYCE 162

Query: 183 QRNISWCEDPSN 194
           +RNI    D SN
Sbjct: 163 ERNIPV--DFSN 172


>gi|255728377|ref|XP_002549114.1| GMP synthase [Candida tropicalis MYA-3404]
 gi|240133430|gb|EER32986.1| GMP synthase [Candida tropicalis MYA-3404]
          Length = 530

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I++    +R LV P A ++ AVSGG DS      +   + DR      F AI VD+  
Sbjct: 212 NFIDTEIARIRKLVGPTAEVIGAVSGGVDSTVGAKIMKEAIGDR------FHAIYVDNGV 265

Query: 62  LRETAKDEVRYVSDVCSR-LRIAHSVVS 88
           +R+    E   V       L I  +VV 
Sbjct: 266 MRKN---ETESVKKTLDDGLGINLTVVD 290


>gi|294875418|ref|XP_002767312.1| GMP synthetase, putative [Perkinsus marinus ATCC 50983]
 gi|239868875|gb|EER00030.1| GMP synthetase, putative [Perkinsus marinus ATCC 50983]
          Length = 559

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + ++     ++ +V   H++ AVSGG DS      ++  L D      KF    VD   L
Sbjct: 242 NFVQKELDRIKRVVGDKHVIAAVSGGVDSSVAAALVYRALGD------KFHPFMVDTGLL 295

Query: 63  RETAKDEVR 71
           R+    EV+
Sbjct: 296 RKNEAAEVK 304


>gi|225873266|ref|YP_002754725.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium capsulatum ATCC 51196]
 gi|259495822|sp|C1F792|MNMA_ACIC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|225792803|gb|ACO32893.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 374

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 58/204 (28%), Gaps = 50/204 (24%)

Query: 22  ILVAVSGGSDSMGLLIALH-----------SVLSDRSFGKIKFSAISVDHCL------RE 64
           + VA+SGG DS  +   L             + + R               +      R 
Sbjct: 7   VAVAMSGGVDSSTVAAMLREEGYDLIGLTLQLWNQRRLAGKD--------GMPEPVQGRC 58

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK------NSKPQTGLMAAAR----------EARYA 108
            + D+V     V   L I + +V+ +        +P        R            ++ 
Sbjct: 59  CSIDDVYDARRVAETLGIPYYLVNEQERFESDVVRPFVSEYLHGRTPIPCSLCNNHLKFD 118

Query: 109 LISEHAKTINATLIMTAHTFDDQLE-----TVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
            +   A+   A  I T H   ++ +      +  R      ++   L G+    L     
Sbjct: 119 QLLLRARQFGADRIATGHYARNEYDPARGRWILKRPADRSKDQTWFLFGLTQEQLSRT-- 176

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
               P     + ++R       ++
Sbjct: 177 --LFPLGGYTKPEVREIAATHKLA 198


>gi|149197386|ref|ZP_01874437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lentisphaera araneosa HTCC2155]
 gi|149139404|gb|EDM27806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Lentisphaera araneosa HTCC2155]
          Length = 353

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 52/191 (27%), Gaps = 41/191 (21%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----------KDEVRYVSD 75
           +SGG DS   L  L      +  G  + +A  +   +              +++++YV  
Sbjct: 7   LSGGVDSSVALRLL------KEEGGHEITAFYL--KIWLEDELAFLGECPWEEDMQYVRA 58

Query: 76  VCSRLRIAHSVVSWKNS--------------KPQTGLMAAAREARYAL-ISEHAKTINAT 120
           VC  L I   VV  +                + +T         R        A      
Sbjct: 59  VCEELDIPLQVVPLQKEYMDRVVSYVLAELKQGRTPSPDILCNERIKFGAFFDAIDETYD 118

Query: 121 LIMTAHTFDDQL-ETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
            + T H    Q  E       R       +   LS +    L      I        +  
Sbjct: 119 KVATGHYAQVQENEEGIFELLRAPDPVKDQTYFLSSLSQAQLSRALFPIGSLM----KSR 174

Query: 177 IRSFLLQRNIS 187
           +R    + ++ 
Sbjct: 175 VRELAEEYDLP 185


>gi|120554647|ref|YP_958998.1| GMP synthase [Marinobacter aquaeolei VT8]
 gi|226739639|sp|A1U1E2|GUAA_MARAV RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120324496|gb|ABM18811.1| GMP synthase (glutamine-hydrolyzing) [Marinobacter aquaeolei VT8]
          Length = 525

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++VR  +R  V    +L+ +SGG DS      LH  + D      + + + VD+ L
Sbjct: 216 DAVRQ-IREQVGSDKVLLGLSGGVDSSVTAALLHKAIGD------QLTCVFVDNGL 264


>gi|302671171|ref|YP_003831131.1| argininosuccinate synthase ArgG [Butyrivibrio proteoclasticus B316]
 gi|302395644|gb|ADL34549.1| argininosuccinate synthase ArgG [Butyrivibrio proteoclasticus B316]
          Length = 407

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 62/229 (27%), Gaps = 48/229 (20%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRY--- 72
               +++A SGG D+         +   +     +     +D C +E   D  E R    
Sbjct: 2   AKEKVILAYSGGLDTTA------IIPWLKENFDYEVICCCID-CGQEEELDGLEERAISC 54

Query: 73  ----------VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                     V + C    +                 + AR      + E A+   A  I
Sbjct: 55  GASKLYILDVVDEFCDEYIVPCVQAHAVYENKYLLGTSMARPLIAKKLVEVARKEGAVAI 114

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
               T   +DQ+        R           +     +  + W     +  R  +I  +
Sbjct: 115 CHGATGKGNDQI--------RFELGIKALAPDIKIIAAWRNDKWT----MDSRESEIE-Y 161

Query: 181 LLQRNI--SWCEDPSNTDDRFERVR----VRRFVRDIDLHALYLKMKKF 223
                I   +  D S     + R R    +     +++  +L    K  
Sbjct: 162 CKAHGINLPFSADSS-----YSRDRNLWHISHEGLELEDPSLEPNYKHL 205


>gi|196004278|ref|XP_002112006.1| hypothetical protein TRIADDRAFT_55610 [Trichoplax adhaerens]
 gi|190585905|gb|EDV25973.1| hypothetical protein TRIADDRAFT_55610 [Trichoplax adhaerens]
          Length = 456

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 69/235 (29%), Gaps = 70/235 (29%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHC----LRETAKDE-VRYV 73
            +L+A SGG  S  +L  +H  LS+    K++F    + +D      L E  +   + ++
Sbjct: 67  KVLLAFSGGPRSSAMLYLVHEGLSENIHKKLRFLPGVVFIDDGAILQLSENERRNYLEFI 126

Query: 74  SD---------VCSRLR-----------------------------------IAHSVVSW 89
                       C  L                                    +   +  +
Sbjct: 127 RTTVSKTGFPLFCESLGKIFPTNQDTNIQSNLLSSDLSNTTRSDATSSSNFDLDTLIKRF 186

Query: 90  KNSK-----------PQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMR 138
           KN +             T         R  LI + A+    T +M A    D   T    
Sbjct: 187 KNDELKIVQVFEKLPNSTAKEDMLHILRKKLIQQIAEANGYTKVMFA----DCG-TRLAV 241

Query: 139 SQRDYAEKGMGLSGMCDTILYDLN---LWISRPFLRCRREDIRSFLLQRNISWCE 190
                  +G G S   D    D     + + RP      +++ ++L  ++I +  
Sbjct: 242 KILSDIAQGRGSSVAHDVTFADERNQAVTLVRPMREFLTKEVANYLTLKSIDYRT 296


>gi|150025936|ref|YP_001296762.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Flavobacterium psychrophilum JIP02/86]
 gi|226738457|sp|A6H0T6|GUAA_FLAPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|149772477|emb|CAL43960.1| GMP synthase [glutamine-hydrolyzing] [Flavobacterium psychrophilum
           JIP02/86]
          Length = 509

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++  +    +++ +SGG DS    + LH  +            I V++ L
Sbjct: 207 LKEKLQDDKVVLGLSGGVDSTVAAVLLHQAIGK------NLYCIFVNNGL 250


>gi|158522690|ref|YP_001530560.1| ExsB family protein [Desulfococcus oleovorans Hxd3]
 gi|158511516|gb|ABW68483.1| ExsB family protein [Desulfococcus oleovorans Hxd3]
          Length = 322

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 26/174 (14%)

Query: 25  AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRLRIA 83
           A+SGG DS  + +  H  L              +D+ + RE    E   V     ++ I 
Sbjct: 37  ALSGGVDSSVVTVLGHRALGKNLKTYF------IDNGIMREG---EPARVVATFKKMGIP 87

Query: 84  HSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             V+    +          P+    A  +     +  +      AT ++      D  ET
Sbjct: 88  VEVIDASRAFFAALKGVTDPEEKREAITQTFYKKIFGKLVVKSKATYLLQGTILTDVDET 147

Query: 135 VYMRSQRDYAEKG-MGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           V    +R +     +G+              I  P +  R++ +R       + 
Sbjct: 148 VA-GIKRQHNVFAQLGIDPQKA-----FGYKILEPLIELRKDGVRKVGRGLGLP 195


>gi|119717853|ref|YP_924818.1| GMP synthase [Nocardioides sp. JS614]
 gi|119538514|gb|ABL83131.1| GMP synthase (glutamine-hydrolyzing) [Nocardioides sp. JS614]
          Length = 527

 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 36/202 (17%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE++R     +      +  +SGG DS     A+ + +  R+ G  + + + VDH L R+
Sbjct: 210 IEAIRA---QIGDRGQAICGLSGGVDS-----AVAAAIVQRAIGD-RLTCVYVDHGLMRQ 260

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAK 115
              ++V    D  +   +   VV  +          + P+       RE      +  A 
Sbjct: 261 GETEQVE--RDFVAATGVDLKVVDAEKQFLDALAGVTDPEEKRKIIGREFIRVFEAAEAD 318

Query: 116 TINATL----------IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
            +  +L          ++    + D +E+             +        +  DL   +
Sbjct: 319 ILGGSLPDDGGSKVAFLVQGTLYPDVVES-----GGGAGTSNIKSHHNVGGLPDDLEFEL 373

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P     ++++R    Q  + 
Sbjct: 374 VEPLRTLFKDEVRLVGEQLGLP 395


>gi|330813025|ref|YP_004357264.1| putative LPS biosynthesis protein WbpG [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486120|gb|AEA80525.1| putative LPS biosynthesis protein WbpG [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 112

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V VSGG DS  LL  L      +    +   A+  D+     +   V  + ++C+ L +
Sbjct: 34  IVGVSGGRDSSYLLYFL------KKKMGLNPLAVHYDNGF--DSDTSVSNILNICNTLNV 85

Query: 83  AHS--VVSWKNSKPQTGLMAAAREAR 106
                V +W   K    +   +R  R
Sbjct: 86  DLETKVANWDVFKKNYEIFFFSRSLR 111


>gi|257470331|ref|ZP_05634422.1| GMP synthase [Fusobacterium ulcerans ATCC 49185]
 gi|317064541|ref|ZP_07929026.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313690217|gb|EFS27052.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 512

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 32/197 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     ++  V    +L+ +SGG DS      +H  + D      + + I VD   LR 
Sbjct: 202 IEETVKSIKETVGDKKVLLGLSGGVDSSVAATLIHKAIGD------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHA 114
             KDE + V +       +    V  ++         S P+T      +E       E  
Sbjct: 255 --KDEAKKVMEIYGENFHMNIKCVDAEDRFLAKLAGVSDPETKRKIIGKEFIEVFDEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFL 170
           K  +   +     + D +E++        + KG  +          +  D+   +  P  
Sbjct: 313 KLEDVEFLAQGTIYPDVIESM--------SVKGPSMTIKSHHNVGGLPEDMKFKLLEPLR 364

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R    +  I 
Sbjct: 365 ELFKDEVRKVGRELGIP 381


>gi|193215202|ref|YP_001996401.1| exsB protein [Chloroherpeton thalassium ATCC 35110]
 gi|254764322|sp|B3QS09|QUEC_CHLT3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|193088679|gb|ACF13954.1| exsB protein [Chloroherpeton thalassium ATCC 35110]
          Length = 226

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V +SGG DS+        +         + +A+ +++  R   ++ V +   +C   RI
Sbjct: 4  VVLLSGGMDSLVTTAIAAHL-------GYELAALHINYGQRTEKRELVAF-QKICDFYRI 55

Query: 83 A 83
           
Sbjct: 56 E 56


>gi|294777621|ref|ZP_06743072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
 gi|294448689|gb|EFG17238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Bacteroides vulgatus PC510]
          Length = 351

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 36/187 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY---VSDVC 77
            +L+ +SGG+DS    + L     + +    +F             +++  Y      +C
Sbjct: 9   KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFY----------EKENDTEYLEDARALC 58

Query: 78  SRLRIAHSVVSWKNSKPQT------GLMAAARE----------ARYALISEHAKTINATL 121
            RL I H     +++  +T          A              ++ L+ + +  +    
Sbjct: 59  ERLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKISDEMGIYH 118

Query: 122 IMTAHTFDDQLETVYMRSQRDYAE---KGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
             T H    +                 +   L G+   IL  +      P     +  +R
Sbjct: 119 FATGHYVRRRFINGCYHITTGADPDKDQSFFLWGLPQEILQRM----LLPMGNLTKARVR 174

Query: 179 SFLLQRN 185
               +R 
Sbjct: 175 EIAAERG 181


>gi|154174972|ref|YP_001408055.1| NAD+ synthetase [Campylobacter curvus 525.92]
 gi|112802897|gb|EAU00241.1| NAD+ synthetase [Campylobacter curvus 525.92]
          Length = 250

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 6  IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
          +E ++ ++       ++L+ VSGG DS  +     + +   +   I  +          +
Sbjct: 12 VEFLKNYITKKSKSKNLLIGVSGGIDSAVVATLCAAAMPKNTHALIMPT--------NAS 63

Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKN 91
          +   +    ++C +L +   +++ + 
Sbjct: 64 STKNIDDALNLCKKLGLNFKILNIQA 89


>gi|304383810|ref|ZP_07366268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella marshii DSM 16973]
 gi|304335066|gb|EFM01338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella marshii DSM 16973]
          Length = 382

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 58/196 (29%), Gaps = 31/196 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
           ++  +    I V +SGG DS  +L  L           IK            ++++++  
Sbjct: 20  MKESLSNRKIAVLLSGGVDSSVVLHELSRAGLQPDCFYIKIGP-EEHEEWDCSSEEDLEM 78

Query: 73  VSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAA-----------REARYALISEHAKT 116
              V +R      VV      W      T     A           R  ++    E  K 
Sbjct: 79  AGAVAARYGCRLEVVDCHQEYWNQVTKYTLEKVKAGFTPNPDVMCNRLIKFGAFDE-KKG 137

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL--WISR----PFL 170
               LI T H    Q E         +         + D   +   L  W  R    P  
Sbjct: 138 HEYELIATGHYA--QTE-----IIDGHKWLVTSPDPVKDQTDFLAQLYDWQLRKALFPIG 190

Query: 171 RCRREDIRSFLLQRNI 186
             R+E++R    + ++
Sbjct: 191 HYRKEEVRQIAEREHL 206


>gi|238920853|ref|YP_002934368.1| IbrA [Edwardsiella ictaluri 93-146]
 gi|238870422|gb|ACR70133.1| IbrA [Edwardsiella ictaluri 93-146]
          Length = 402

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          +H+ ++ SGG DS  LL     +   +   K KFS + +D
Sbjct: 26 SHVCISFSGGKDSTVLLHLAGYIARKK---KKKFSVLFID 62


>gi|256390704|ref|YP_003112268.1| GMP synthase [Catenulispora acidiphila DSM 44928]
 gi|256356930|gb|ACU70427.1| GMP synthase, large subunit [Catenulispora acidiphila DSM 44928]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 62/202 (30%), Gaps = 31/202 (15%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + +E     +R  V     +  +SGG DS      +   + +      + + + VDH  L
Sbjct: 203 NIVEEQVASIREQVGTKRAICGLSGGVDSAVAAAIVQKAVGE------QLTCVFVDHGLL 256

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREA-------- 105
           R+   ++V    D  +   +   VV  +          S P+       RE         
Sbjct: 257 RKGEAEQVE--KDFVAATGVQLKVVDAEQRFLSALAGVSDPEEKRKIIGREFIRVFEQAE 314

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI 165
           R  +            ++    + D +E+             +        +  DL   +
Sbjct: 315 REIVEQSADAGEPVRFLVQGTLYPDVVES-----GGGTGAANIKSHHNVGGLPDDLQFEL 369

Query: 166 SRPFLRCRREDIRSFLLQRNIS 187
             P  +  ++++R    +  + 
Sbjct: 370 IEPLRKLFKDEVRQVGRELGLP 391


>gi|261401301|ref|ZP_05987426.1| ExsB protein [Neisseria lactamica ATCC 23970]
 gi|269208680|gb|EEZ75135.1| ExsB protein [Neisseria lactamica ATCC 23970]
          Length = 218

 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 54/195 (27%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS   L     + + +++G+    AI+  +  R     E+   + +   L +  +
Sbjct: 10  FSGGQDSTTCL-----IQAVQTYGRENVRAITFQYGQRH--AVELERAAWIAQDLGVPQT 62

Query: 86  VVSWKNSK--PQTGLMAAAREA--------------RYALI----SEHAKTINATLIMTA 125
           +V     K      LM  A                 R AL     + HAK      I+  
Sbjct: 63  LVDLNLMKTITHNALMDEAAAIETVDNGVPNTFVDGRNALFLLYAAIHAKGQGIRHIIAG 122

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLRCRRE 175
                  ET              G     D  +  +N+           I  P +   + 
Sbjct: 123 -----VCET-----------DFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPLMYLTKA 166

Query: 176 DIRSFLLQRN-ISWC 189
              +   +   + + 
Sbjct: 167 QTWALADEMGALDYI 181


>gi|171184998|ref|YP_001793917.1| asparagine synthase [Thermoproteus neutrophilus V24Sta]
 gi|170934210|gb|ACB39471.1| asparagine synthase [Thermoproteus neutrophilus V24Sta]
          Length = 285

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
            +A SGG DS  + +A   +               V+  L E+   +  +  +   RL +
Sbjct: 17  AIAFSGGLDSTAVALAHVKLGHRPLL---------VNVQLAESPGTDAPHAVEAARRLGL 67

Query: 83  AHSVVSWKNSKPQTGLMA 100
              V      +    +  
Sbjct: 68  PLVVRYVPMWEALAAVEE 85


>gi|148653563|ref|YP_001280656.1| exsB protein [Psychrobacter sp. PRwf-1]
 gi|189038944|sp|A5WGB5|QUEC_PSYWF RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|148572647|gb|ABQ94706.1| exsB protein [Psychrobacter sp. PRwf-1]
          Length = 256

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V +SGG DS+  L    +  +       K +A+S ++  R  ++        +  +  +
Sbjct: 27 VVLLSGGLDSVTCLYWAKARYA-------KVTAVSFNYGQRHNSELVAA--KSIAGQAGV 77

Query: 83 AHSVVSWKNSKPQTG 97
           H ++    ++    
Sbjct: 78 NHKIIDIDIAQLGGS 92


>gi|289671195|ref|ZP_06492270.1| GMP synthase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 521

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR+ V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VRAQVGDDEVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTI-----NA 119
                    + +   V+    S              A R+    L  +          NA
Sbjct: 271 AM---FAEHMGVK--VIRVNASDRYFAKLEGVSDPEAKRKIIGNLFVDIFDEESNKLANA 325

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +   + L +  P     ++++R 
Sbjct: 326 KWLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRR 382

Query: 180 FLLQRNIS 187
             ++  + 
Sbjct: 383 LGVELGLP 390


>gi|289665798|ref|ZP_06487379.1| GMP synthase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 521

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR+ V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VRAQVGDDEVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISEHAKTI-----NA 119
                    + +   V+    S              A R+    L  +          NA
Sbjct: 271 AM---FAEHMGVK--VIRVNASDRYFAKLEGVSDPEAKRKIIGNLFVDIFDEESNKLANA 325

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +   + L +  P     ++++R 
Sbjct: 326 KWLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRR 382

Query: 180 FLLQRNIS 187
             ++  + 
Sbjct: 383 LGVELGLP 390


>gi|289548574|ref|YP_003473562.1| exsB protein [Thermocrinis albus DSM 14484]
 gi|289182191|gb|ADC89435.1| exsB protein [Thermocrinis albus DSM 14484]
          Length = 214

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            ILV +SGG DS  LL        +         AIS D+  R +   E++Y   +   
Sbjct: 2  RRILVLLSGGMDSAVLLWLAKREFEE-------VYAISFDYGQRHS--VELKYAKILAQL 52

Query: 80 LRIAHSVV 87
            +   ++
Sbjct: 53 AGVKEHIL 60


>gi|152992636|ref|YP_001358357.1| tRNA-specific 2-thiouridylase MnmA [Sulfurovum sp. NBC37-1]
 gi|205828996|sp|A6Q941|MNMA_SULNB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|151424497|dbj|BAF72000.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sulfurovum sp. NBC37-1]
          Length = 340

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 35/184 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH---CLRETAKDEVRYVSD 75
              +LV +SGG DS    + L     +     ++       H      E   +  + V  
Sbjct: 3   KGKVLVGLSGGVDSTVTAVLLQKEGYEVEGVYMRL------HDKPGYHE--DNWGK-VQK 53

Query: 76  VCSRLRI----------------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
           V   LRI                 + V S+K        +   R  ++  + E A T+  
Sbjct: 54  VADYLRIKVHFHDLSEAFNANVYEYFVESYKKGLTPNPCVMCNRTIKFGKMVEFADTLGI 113

Query: 120 TLIMTAHTFDDQLE-TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
             + T H    Q +      ++    ++   LS +   +L      +  P     ++D++
Sbjct: 114 EFVATGHYL--QCDGNYIYAAEDAGKDQSYFLSEVKKEVLPR----LLFPLGTWIKDDVK 167

Query: 179 SFLL 182
           ++  
Sbjct: 168 AYAA 171


>gi|91781835|ref|YP_557041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia xenovorans LB400]
 gi|123359156|sp|Q145K0|MNMA_BURXL RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|91685789|gb|ABE28989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia xenovorans LB400]
          Length = 381

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 46/200 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---S 74
               ++V +SGG DS      L     D     +K               D+  Y     
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 75  DV------CSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
           D          + I    V++                 A R          E ++    +
Sbjct: 52  DWIDVVSVADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           HA ++ A  I T H       + + E   +++     ++   L  +    L         
Sbjct: 112 HAMSLGAQTIATGHYARVRENNGRFE--LLKALDHTKDQSYFLHRLNQAQLSKT----LF 165

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     +  +R    Q  + 
Sbjct: 166 PLGEIPKTRVREIAEQIALP 185


>gi|86609210|ref|YP_477972.1| argininosuccinate synthase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|119361334|sp|Q2JKS2|ASSY_SYNJB RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|86557752|gb|ABD02709.1| argininosuccinate synthase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 400

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 39/185 (21%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHC------------LRETA 66
             +++A SGG D S+ +    H    +         A++VD              LR  A
Sbjct: 5   KKVVLAYSGGVDTSVCIPYLKHEWGVE------SVVALAVDLGQGAELEAIQAKALRAGA 58

Query: 67  KDEV--RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +  +    V  + +         +    +      A AR     L+ E A+ + A  +  
Sbjct: 59  EQSLVREAVQALITDYAFPAIQANALYEQRYPLSTALARPLIAKLLVEVAEEVGADAVAH 118

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+     R     A     L  +     + +            RE+  ++  
Sbjct: 119 GCTGKGNDQV-----RFDLAIAALNPQLKVLAPAREWGM-----------TREETIAYGE 162

Query: 183 QRNIS 187
           +  I 
Sbjct: 163 RYGIP 167


>gi|327290951|ref|XP_003230185.1| PREDICTED: FAD synthase-like [Anolis carolinensis]
          Length = 478

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 50/174 (28%), Gaps = 35/174 (20%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKI-KFSAISVDHCLRETA--KDEVRYVSDV 76
           + + V  +GG D   LL   H+ +  R  G+  K  A+ +    R  +   +   ++ D 
Sbjct: 332 SQLCVGFNGGKDCTALLHLFHAAVQRRHPGRTEKLKALYI----RTVSPFPEMEEFIRDT 387

Query: 77  CSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVY 136
             R  +    V                      + +                  +LE V 
Sbjct: 388 AKRYNLQVCDVHGNI---------------REALGDLKAQHP------------ELEAVL 420

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           M   R        LS  C T           P L     DI +FL    I +C 
Sbjct: 421 MG-TRRTDPYSCTLSAFCPTDPGWPPYMRVNPLLDWTYRDIWTFLRSLYIPYCI 473


>gi|322805870|emb|CBZ03435.1| queuosine Biosynthesis QueC ATPase [Clostridium botulinum H04402
          065]
          Length = 219

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          I+V  SGG DS   L  A             +  A+S D    H L      E+    D+
Sbjct: 7  IVV-FSGGQDSTTCLFWAKKKYK--------EVIAVSFDYNQKHKL------ELDCAKDI 51

Query: 77 CSRLRIAHSVVS 88
          C +  I H ++ 
Sbjct: 52 CKKYNIEHHILD 63


>gi|260585060|ref|ZP_05852802.1| ExsB protein [Granulicatella elegans ATCC 700633]
 gi|260157256|gb|EEW92330.1| ExsB protein [Granulicatella elegans ATCC 700633]
          Length = 214

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 65/191 (34%), Gaps = 39/191 (20%)

Query: 23  LVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           LV +SGG D S  L +AL            +  AIS  +  ++  + E+     + +  +
Sbjct: 3   LVLLSGGVDSSTALSLALSQ--------DPQVEAISFSYN-QKHKELELEAARKIAAYYK 53

Query: 82  IAHSVVSW-----------------------KNSKPQTGLMAAAREARY-ALISEHAKTI 117
           + H ++                           ++ +       R   + ++++  A   
Sbjct: 54  VPHQILEVSSIFSGSKSSLNAGNDIEVSTGDYATQTEANTEVEFRNGIFISILAGIAMQK 113

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A+ I      DD           D + + +        +     + ++ PF + +++DI
Sbjct: 114 GASEIYFGAHLDDSG-----VIYPDCSPEFIEAMNQAVQLGSGGKVRLTAPFGQVKKKDI 168

Query: 178 RSFLLQRNISW 188
            +  ++  + +
Sbjct: 169 VAKGVELGVPY 179


>gi|226948888|ref|YP_002803979.1| ExsB protein [Clostridium botulinum A2 str. Kyoto]
 gi|254764323|sp|C1FN27|QUEC_CLOBJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|226843177|gb|ACO85843.1| ExsB protein [Clostridium botulinum A2 str. Kyoto]
          Length = 219

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          I+V  SGG DS   L  A             +  A+S D    H L      E+    D+
Sbjct: 7  IVV-FSGGQDSTTCLFWAKKKYK--------EVIAVSFDYNQKHKL------ELDCAKDI 51

Query: 77 CSRLRIAHSVVS 88
          C +  I H ++ 
Sbjct: 52 CKKYNIEHHILD 63


>gi|253699433|ref|YP_003020622.1| phosphoadenosine phosphosulfate reductase [Geobacter sp. M21]
 gi|251774283|gb|ACT16864.1| phosphoadenosine phosphosulfate reductase [Geobacter sp. M21]
          Length = 784

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLS 44
           + +  SGG DS+ LL   H VL 
Sbjct: 147 VYIGFSGGKDSVVLLDLCHKVLP 169


>gi|170754738|ref|YP_001781193.1| ExsB protein [Clostridium botulinum B1 str. Okra]
 gi|254764324|sp|B1IL95|QUEC_CLOBK RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|169119950|gb|ACA43786.1| ExsB protein [Clostridium botulinum B1 str. Okra]
          Length = 219

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          I+V  SGG DS   L  A             +  A+S D    H L      E+    D+
Sbjct: 7  IVV-FSGGQDSTTCLFWAKKKYK--------EVIAVSFDYNQKHKL------ELDCAKDI 51

Query: 77 CSRLRIAHSVVS 88
          C +  I H ++ 
Sbjct: 52 CKKYNIEHHILD 63


>gi|168180210|ref|ZP_02614874.1| ExsB protein [Clostridium botulinum NCTC 2916]
 gi|182669149|gb|EDT81125.1| ExsB protein [Clostridium botulinum NCTC 2916]
          Length = 216

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          I+V  SGG DS   L  A             +  A+S D    H L      E+    D+
Sbjct: 7  IVV-FSGGQDSTTCLFWAKKKYK--------EVIAVSFDYNQKHKL------ELDCAKDI 51

Query: 77 CSRLRIAHSVVS 88
          C +  I H ++ 
Sbjct: 52 CKKYNIEHHILD 63


>gi|254831669|ref|ZP_05236324.1| argininosuccinate synthase [Listeria monocytogenes 10403S]
 gi|255027648|ref|ZP_05299634.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-003]
          Length = 404

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 45/193 (23%)

Query: 18  YPAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRE-- 64
               I++A SGG D S+           ++     V   ++   IK  AI+V     E  
Sbjct: 2   AKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAITV--GASESY 59

Query: 65  --TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              AK+E  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 60  TIDAKEE--FAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + +I    D
Sbjct: 156 NYAKEHDIPVPID 168


>gi|153939170|ref|YP_001390902.1| ExsB protein [Clostridium botulinum F str. Langeland]
 gi|189038908|sp|A7GDP2|QUEC_CLOBL RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|152935066|gb|ABS40564.1| ExsB protein [Clostridium botulinum F str. Langeland]
 gi|295318964|gb|ADF99341.1| ExsB protein [Clostridium botulinum F str. 230613]
          Length = 219

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          I+V  SGG DS   L  A             +  A+S D    H L      E+    D+
Sbjct: 7  IVV-FSGGQDSTTCLFWAKKKYK--------EVIAVSFDYNQKHKL------ELDCAKDI 51

Query: 77 CSRLRIAHSVVS 88
          C +  I H ++ 
Sbjct: 52 CKKYNIEHHILD 63


>gi|148379524|ref|YP_001254065.1| hypothetical protein CBO1557 [Clostridium botulinum A str. ATCC
          3502]
 gi|153933891|ref|YP_001383901.1| exsB protein [Clostridium botulinum A str. ATCC 19397]
 gi|153936103|ref|YP_001387449.1| exsB protein [Clostridium botulinum A str. Hall]
 gi|189038905|sp|A7FU68|QUEC_CLOB1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189038907|sp|A5I232|QUEC_CLOBH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|148289008|emb|CAL83097.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
          3502]
 gi|152929935|gb|ABS35435.1| exsB protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932017|gb|ABS37516.1| exsB protein [Clostridium botulinum A str. Hall]
          Length = 219

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDV 76
          I+V  SGG DS   L  A             +  A+S D    H L      E+    D+
Sbjct: 7  IVV-FSGGQDSTTCLFWAKKKYK--------EVIAVSFDYNQKHKL------ELDCAKDI 51

Query: 77 CSRLRIAHSVVS 88
          C +  I H ++ 
Sbjct: 52 CKKYNIEHHILD 63


>gi|121712429|ref|XP_001273826.1| GMP synthase [Aspergillus clavatus NRRL 1]
 gi|119401978|gb|EAW12400.1| GMP synthase [Aspergillus clavatus NRRL 1]
          Length = 539

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 29/205 (14%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHC 61
             ++     +R LV    H+L AVSGG DS      +   + +R      F A+ V + C
Sbjct: 214 KFVDQEILRIRKLVGETDHVLGAVSGGVDSTVAAKLMKEAIGNR------FHAVLVNNGC 267

Query: 62  LRETAKDEVRYVSDVCSR-LRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKT 116
           +R     E   V++  +R L I  +VV     + +           R        +  + 
Sbjct: 268 MRLN---ECETVAETLNRHLGINLTVVDASKRFLDGLKGVTDPEKKRMFIGGTFIDVFEE 324

Query: 117 INATLIMTAHTFD-------------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
               +   A                 D +E++  +      +    +  +   ++    +
Sbjct: 325 EAEKIEAEAEHSGAKIKWFLQGTLYPDVIESISFKGPSATIKTHHNVGALPKRMIEGQGM 384

Query: 164 WISRPFLRCRREDIRSFLLQRNISW 188
            +  P     ++++R    +  I+ 
Sbjct: 385 KLIEPLRELFKDEVRQLGRELGIAH 409


>gi|120403098|ref|YP_952927.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium vanbaalenii
           PYR-1]
 gi|166235070|sp|A1T6X1|MNMA_MYCVP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|119955916|gb|ABM12921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 357

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 37/134 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------AKD 68
            +LVA+SGG DS      +     D          + V   L               +K+
Sbjct: 2   RVLVAMSGGVDSSVAAARMVDAGHD---------VVGVHLALSSAPGTLRTGSRGCCSKE 52

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAR------------EARYALISE 112
           +      V   L I   V  + +   +  +     + AR              +++ +S 
Sbjct: 53  DAGDARRVADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALSA 112

Query: 113 HAKTINATLIMTAH 126
            A  +    + T H
Sbjct: 113 RALALGFDALATGH 126


>gi|14590200|ref|NP_142265.1| hypothetical protein PH0276 [Pyrococcus horikoshii OT3]
 gi|3256665|dbj|BAA29348.1| 206aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 206

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 47/174 (27%), Gaps = 36/174 (20%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS      L  +  +     I F  +           +  +Y  +    L   H 
Sbjct: 9   FSGGKDSSLAAWILRKLGYEVRLVTITFGVL----------DNW-KYAKETADILGFEHE 57

Query: 86  VVSWKNSKPQTGLMAA------AREARY---ALISEHAKTINATLIMTAHTFDDQLETVY 136
           VV          +          R  ++     +   A       I      DD++  + 
Sbjct: 58  VVRLPRELLNMAVEMCIEDGKPGRAIQFLHEKALEYVASRSYVKRISDGTRRDDKVPFLD 117

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
           +R  R   ++               N+   RP L    + IR      +I   E
Sbjct: 118 LRKARSLEDRF--------------NVAYIRPLLGLGYKTIRELA--NSIFVIE 155


>gi|13474826|ref|NP_106396.1| succinoglycan biosynthesis regulator (exsB) [Mesorhizobium loti
           MAFF303099]
 gi|81777975|sp|Q98AZ0|QUEC1_RHILO RecName: Full=7-cyano-7-deazaguanine synthase 1; AltName:
           Full=7-cyano-7-carbaguanine synthase 1; AltName:
           Full=PreQ(0) synthase 1; AltName: Full=Queuosine
           biosynthesis protein queC 1
 gi|14025582|dbj|BAB52182.1| succinoglycan biosynthesis regulator; ExsB [Mesorhizobium loti
           MAFF303099]
          Length = 232

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS+ L    H V +++         +S D+  R   K E+ + +    RL + H 
Sbjct: 7   CSGGLDSVSLA---HKVATEQKL----IGLLSFDYGQRH--KKELGFAAICAKRLAVPHQ 57

Query: 86  VVSWKNSKPQTGLMA 100
           +V  ++        A
Sbjct: 58  IVDIRDVGRNLSGSA 72


>gi|16804129|ref|NP_465614.1| argininosuccinate synthase [Listeria monocytogenes EGD-e]
 gi|224501112|ref|ZP_03669419.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-561]
 gi|254827022|ref|ZP_05231709.1| argininosuccinate synthase [Listeria monocytogenes FSL N3-165]
 gi|21263427|sp|Q8Y5H2|ASSY_LISMO RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|16411560|emb|CAD00168.1| argG [Listeria monocytogenes EGD-e]
 gi|258599404|gb|EEW12729.1| argininosuccinate synthase [Listeria monocytogenes FSL N3-165]
          Length = 404

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 45/193 (23%)

Query: 18  YPAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRE-- 64
               I++A SGG D S+           ++     V   ++   IK  AI+V     E  
Sbjct: 2   AKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAITV--GASESY 59

Query: 65  --TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              AK+E  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 60  TIDAKEE--FAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + +I    D
Sbjct: 156 NYAKEHDIPVPID 168


>gi|47095799|ref|ZP_00233404.1| argininosuccinate synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|254899212|ref|ZP_05259136.1| argininosuccinate synthase [Listeria monocytogenes J0161]
 gi|254912647|ref|ZP_05262659.1| argininosuccinate synthase [Listeria monocytogenes J2818]
 gi|254936974|ref|ZP_05268671.1| argininosuccinate synthase [Listeria monocytogenes F6900]
 gi|284802536|ref|YP_003414401.1| argininosuccinate synthase [Listeria monocytogenes 08-5578]
 gi|284995678|ref|YP_003417446.1| argininosuccinate synthase [Listeria monocytogenes 08-5923]
 gi|47015803|gb|EAL06731.1| argininosuccinate synthase [Listeria monocytogenes str. 1/2a F6854]
 gi|258609577|gb|EEW22185.1| argininosuccinate synthase [Listeria monocytogenes F6900]
 gi|284058098|gb|ADB69039.1| argininosuccinate synthase [Listeria monocytogenes 08-5578]
 gi|284061145|gb|ADB72084.1| argininosuccinate synthase [Listeria monocytogenes 08-5923]
 gi|293590642|gb|EFF98976.1| argininosuccinate synthase [Listeria monocytogenes J2818]
          Length = 404

 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 45/193 (23%)

Query: 18  YPAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRE-- 64
               I++A SGG D S+           ++     V   ++   IK  AI+V     E  
Sbjct: 2   AKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAITV--GASESY 59

Query: 65  --TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              AK+E  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 60  TIDAKEE--FAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + +I    D
Sbjct: 156 NYAKEHDIPVPID 168


>gi|282926575|ref|ZP_06334205.1| exsB protein [Staphylococcus aureus A10102]
 gi|282591468|gb|EFB96540.1| exsB protein [Staphylococcus aureus A10102]
          Length = 222

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     I+V  SGG DS   L  A       + F +++   ++ ++  R     E+    
Sbjct: 5  LNNEKAIVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DTEIEVAK 53

Query: 75 DVCSRLRIAHSVVS 88
           +     + H V+ 
Sbjct: 54 QIAQDQGMKHHVLD 67


>gi|269140024|ref|YP_003296725.1| hypothetical protein ETAE_2679 [Edwardsiella tarda EIB202]
 gi|267985685|gb|ACY85514.1| hypothetical protein ETAE_2679 [Edwardsiella tarda EIB202]
 gi|304559854|gb|ADM42518.1| Co-activator of prophage gene expression IbrA [Edwardsiella tarda
          FL6-60]
          Length = 403

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           + V+ SGG DS  LL     V   +     +   + VD
Sbjct: 27 RVCVSFSGGKDSTVLLHIAAEVARRKKR---RLFVLFVD 62


>gi|262306067|gb|ACY45626.1| gln amidotransferase [Plathemis lydia]
          Length = 196

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAK-DEV 70
           +R  V  + +L+  SGG DS      L   L +      +   + +D+   R+  + D  
Sbjct: 37  IRETVGTSQVLLLASGGVDSTVCAALLRKALPED-----QLITVHIDNGFMRKNDRIDVE 91

Query: 71  RYVSDVCSRLRI 82
           + +  +C +L+I
Sbjct: 92  QTLRKICPKLKI 103


>gi|260913335|ref|ZP_05919816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632566|gb|EEX50736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pasteurella dagmatis ATCC 43325]
          Length = 383

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 36/135 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++  +SGG DS      L           +K               D+  Y     
Sbjct: 22  SKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAA 71

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALIS 111
                  VC +L I    +++                 A R          E ++ A + 
Sbjct: 72  DLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKAFLE 131

Query: 112 EHAKTINATLIMTAH 126
             A+ + A  I T H
Sbjct: 132 YAAEDLGADYIATGH 146


>gi|150003570|ref|YP_001298314.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC
          8482]
 gi|205810521|sp|A6KZ28|MNMA2_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2
 gi|149931994|gb|ABR38692.1| putative tRNA
          (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Bacteroides vulgatus ATCC 8482]
          Length = 351

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY---VSDVC 77
           +L+ +SGG+DS    + L     + +    +F             +++  Y      +C
Sbjct: 9  KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFY----------EKENDTEYLEDARALC 58

Query: 78 SRLRIAHSVVSWKNSKPQT 96
           RL I H     +++  +T
Sbjct: 59 ERLNIPHLTYDVRDTFRKT 77


>gi|82750414|ref|YP_416155.1| aluminum resistance protein [Staphylococcus aureus RF122]
 gi|110816265|sp|Q2YSL9|QUEC_STAAB RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|82655945|emb|CAI80349.1| probable aluminum resistance protein [Staphylococcus aureus
          RF122]
          Length = 222

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     I+V  SGG DS   L  A       + F +++   ++ ++  R     E+    
Sbjct: 5  LNNEKAIVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DTEIEVAK 53

Query: 75 DVCSRLRIAHSVVS 88
           +     + H V+ 
Sbjct: 54 QIAQDQGMKHHVLD 67


>gi|33862318|ref|NP_893878.1| GMP synthase [Prochlorococcus marinus str. MIT 9313]
 gi|44887937|sp|Q7V9A9|GUAA_PROMM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33640431|emb|CAE20220.1| Glutamine amidotransferase class-I:GMP synthase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 528

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           IE     V++ V    +L+A+SGG DS  L   L   + D+
Sbjct: 211 IEEAIAQVQAQVGQKRVLLALSGGVDSSTLAFLLKKAIGDQ 251


>gi|15923702|ref|NP_371236.1| aluminum resistance protein [Staphylococcus aureus subsp. aureus
          Mu50]
 gi|15926389|ref|NP_373922.1| hypothetical protein SA0667 [Staphylococcus aureus subsp. aureus
          N315]
 gi|21282403|ref|NP_645491.1| hypothetical protein MW0674 [Staphylococcus aureus subsp. aureus
          MW2]
 gi|49482968|ref|YP_040192.1| hypothetical protein SAR0765 [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|49485584|ref|YP_042805.1| hypothetical protein SAS0677 [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57651551|ref|YP_185649.1| exsB protein [Staphylococcus aureus subsp. aureus COL]
 gi|87160495|ref|YP_493400.1| exsB protein [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194486|ref|YP_499280.1| hypothetical protein SAOUHSC_00721 [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|148267172|ref|YP_001246115.1| exsB protein [Staphylococcus aureus subsp. aureus JH9]
 gi|150393220|ref|YP_001315895.1| exsB protein [Staphylococcus aureus subsp. aureus JH1]
 gi|151220893|ref|YP_001331715.1| hypothetical protein NWMN_0681 [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156979040|ref|YP_001441299.1| hypothetical protein SAHV_0709 [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|161508976|ref|YP_001574635.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus USA300_TCH1516]
 gi|221140928|ref|ZP_03565421.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus str. JKD6009]
 gi|253315351|ref|ZP_04838564.1| exsB protein [Staphylococcus aureus subsp. aureus str.
          CF-Marseille]
 gi|253731335|ref|ZP_04865500.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus USA300_TCH959]
 gi|253732844|ref|ZP_04867009.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH130]
 gi|255005504|ref|ZP_05144105.2| exsB protein [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257424831|ref|ZP_05601258.1| exsB protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427499|ref|ZP_05603898.1| exsB protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430130|ref|ZP_05606514.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257432832|ref|ZP_05609192.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus E1410]
 gi|257435736|ref|ZP_05611784.1| exsB protein [Staphylococcus aureus subsp. aureus M876]
 gi|257794967|ref|ZP_05643946.1| exsB protein [Staphylococcus aureus A9781]
 gi|258418284|ref|ZP_05682549.1| queuosine biosynthesis protein queC [Staphylococcus aureus A9763]
 gi|258421581|ref|ZP_05684506.1| exsB protein [Staphylococcus aureus A9719]
 gi|258430774|ref|ZP_05688486.1| queuosine biosynthesis protein queC [Staphylococcus aureus A9299]
 gi|258441733|ref|ZP_05691005.1| queuosine biosynthesis protein queC [Staphylococcus aureus A8115]
 gi|258445825|ref|ZP_05694002.1| queuosine biosynthesis protein queC [Staphylococcus aureus A6300]
 gi|258449636|ref|ZP_05697738.1| queuosine biosynthesis protein queC [Staphylococcus aureus A6224]
 gi|258452920|ref|ZP_05700914.1| queuosine biosynthesis protein queC [Staphylococcus aureus A5948]
 gi|258454037|ref|ZP_05702009.1| queuosine biosynthesis protein queC [Staphylococcus aureus A5937]
 gi|262048447|ref|ZP_06021332.1| hypothetical protein SAD30_2174 [Staphylococcus aureus D30]
 gi|262052794|ref|ZP_06024982.1| hypothetical protein SA930_0351 [Staphylococcus aureus 930918-3]
 gi|269202332|ref|YP_003281601.1| exsB protein [Staphylococcus aureus subsp. aureus ED98]
 gi|282894477|ref|ZP_06302706.1| exsB protein [Staphylococcus aureus A8117]
 gi|282903339|ref|ZP_06311230.1| ExsB protein [Staphylococcus aureus subsp. aureus C160]
 gi|282905119|ref|ZP_06312977.1| exsB protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908096|ref|ZP_06315927.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus WW2703/97]
 gi|282910356|ref|ZP_06318160.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus WBG10049]
 gi|282913549|ref|ZP_06321338.1| ExsB protein [Staphylococcus aureus subsp. aureus M899]
 gi|282916050|ref|ZP_06323813.1| exsB protein [Staphylococcus aureus subsp. aureus D139]
 gi|282918502|ref|ZP_06326239.1| exsB protein [Staphylococcus aureus subsp. aureus C427]
 gi|282922004|ref|ZP_06329701.1| exsB protein [Staphylococcus aureus A9765]
 gi|282923467|ref|ZP_06331147.1| exsB protein [Staphylococcus aureus subsp. aureus C101]
 gi|283769874|ref|ZP_06342766.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus H19]
 gi|283957541|ref|ZP_06374994.1| ExsB protein [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284023734|ref|ZP_06378132.1| exsB protein [Staphylococcus aureus subsp. aureus 132]
 gi|293500596|ref|ZP_06666447.1| exsB protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509542|ref|ZP_06668253.1| exsB protein [Staphylococcus aureus subsp. aureus M809]
 gi|293524128|ref|ZP_06670815.1| ExsB protein [Staphylococcus aureus subsp. aureus M1015]
 gi|294849381|ref|ZP_06790124.1| exsB protein [Staphylococcus aureus A9754]
 gi|295406430|ref|ZP_06816236.1| exsB protein [Staphylococcus aureus A8819]
 gi|295427288|ref|ZP_06819923.1| exsB protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296274776|ref|ZP_06857283.1| exsB protein [Staphylococcus aureus subsp. aureus MR1]
 gi|297208564|ref|ZP_06924993.1| transcription regulator ExsB [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|297245157|ref|ZP_06929031.1| exsB protein [Staphylococcus aureus A8796]
 gi|297590361|ref|ZP_06949000.1| transcription regulator ExsB [Staphylococcus aureus subsp. aureus
          MN8]
 gi|300912656|ref|ZP_07130099.1| transcription regulator ExsB [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|304381673|ref|ZP_07364322.1| transcription regulator ExsB [Staphylococcus aureus subsp. aureus
          ATCC BAA-39]
 gi|81649771|sp|Q6GBB8|QUEC_STAAS RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81651556|sp|Q6GIT0|QUEC_STAAR RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81695012|sp|Q5HHV8|QUEC_STAAC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81704614|sp|Q7A1I5|QUEC_STAAW RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81706049|sp|Q7A6U7|QUEC_STAAN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81781962|sp|Q99VR1|QUEC_STAAM RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|110816263|sp|Q2FIS8|QUEC_STAA3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|110816264|sp|Q2G1X6|QUEC_STAA8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189029535|sp|A7WZJ4|QUEC_STAA1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189029536|sp|A6TZJ0|QUEC_STAA2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189029537|sp|A5IQR6|QUEC_STAA9 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189029538|sp|A6QF21|QUEC_STAAE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|189029539|sp|A8YZY3|QUEC_STAAT RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|13700603|dbj|BAB41900.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus N315]
 gi|14246481|dbj|BAB56874.1| similar to aluminum resistance protein [Staphylococcus aureus
          subsp. aureus Mu50]
 gi|21203840|dbj|BAB94539.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MW2]
 gi|49241097|emb|CAG39775.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MRSA252]
 gi|49244027|emb|CAG42453.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus MSSA476]
 gi|57285737|gb|AAW37831.1| exsB protein [Staphylococcus aureus subsp. aureus COL]
 gi|87126469|gb|ABD20983.1| exsB protein [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202044|gb|ABD29854.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus NCTC 8325]
 gi|147740241|gb|ABQ48539.1| exsB protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149945672|gb|ABR51608.1| exsB protein [Staphylococcus aureus subsp. aureus JH1]
 gi|150373693|dbj|BAF66953.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus str. Newman]
 gi|156721175|dbj|BAF77592.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus Mu3]
 gi|160367785|gb|ABX28756.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus USA300_TCH1516]
 gi|253725076|gb|EES93805.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus USA300_TCH959]
 gi|253729209|gb|EES97938.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus TCH130]
 gi|257272401|gb|EEV04524.1| exsB protein [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275692|gb|EEV07165.1| exsB protein [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279327|gb|EEV09928.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus 68-397]
 gi|257282247|gb|EEV12382.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus E1410]
 gi|257284927|gb|EEV15046.1| exsB protein [Staphylococcus aureus subsp. aureus M876]
 gi|257788939|gb|EEV27279.1| exsB protein [Staphylococcus aureus A9781]
 gi|257839077|gb|EEV63556.1| queuosine biosynthesis protein queC [Staphylococcus aureus A9763]
 gi|257842507|gb|EEV66931.1| exsB protein [Staphylococcus aureus A9719]
 gi|257849446|gb|EEV73416.1| queuosine biosynthesis protein queC [Staphylococcus aureus A9299]
 gi|257852202|gb|EEV76129.1| queuosine biosynthesis protein queC [Staphylococcus aureus A8115]
 gi|257855401|gb|EEV78339.1| queuosine biosynthesis protein queC [Staphylococcus aureus A6300]
 gi|257857144|gb|EEV80043.1| queuosine biosynthesis protein queC [Staphylococcus aureus A6224]
 gi|257859431|gb|EEV82285.1| queuosine biosynthesis protein queC [Staphylococcus aureus A5948]
 gi|257863902|gb|EEV86658.1| queuosine biosynthesis protein queC [Staphylococcus aureus A5937]
 gi|259159335|gb|EEW44391.1| hypothetical protein SA930_0351 [Staphylococcus aureus 930918-3]
 gi|259163535|gb|EEW48092.1| hypothetical protein SAD30_2174 [Staphylococcus aureus D30]
 gi|262074622|gb|ACY10595.1| exsB protein [Staphylococcus aureus subsp. aureus ED98]
 gi|269940289|emb|CBI48666.1| conserved hypothetical protein [Staphylococcus aureus subsp.
          aureus TW20]
 gi|282314335|gb|EFB44725.1| exsB protein [Staphylococcus aureus subsp. aureus C101]
 gi|282317636|gb|EFB48008.1| exsB protein [Staphylococcus aureus subsp. aureus C427]
 gi|282319998|gb|EFB50345.1| exsB protein [Staphylococcus aureus subsp. aureus D139]
 gi|282322581|gb|EFB52903.1| ExsB protein [Staphylococcus aureus subsp. aureus M899]
 gi|282325748|gb|EFB56056.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus WBG10049]
 gi|282327761|gb|EFB58043.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus WW2703/97]
 gi|282331944|gb|EFB61455.1| exsB protein [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282593662|gb|EFB98654.1| exsB protein [Staphylococcus aureus A9765]
 gi|282596294|gb|EFC01255.1| ExsB protein [Staphylococcus aureus subsp. aureus C160]
 gi|282763190|gb|EFC03321.1| exsB protein [Staphylococcus aureus A8117]
 gi|283460021|gb|EFC07111.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus H19]
 gi|283470006|emb|CAQ49217.1| ExsB protein [Staphylococcus aureus subsp. aureus ST398]
 gi|283790992|gb|EFC29807.1| ExsB protein [Staphylococcus aureus subsp. aureus A017934/97]
 gi|285816413|gb|ADC36900.1| Queuosine Biosynthesis QueC ATPase [Staphylococcus aureus
          04-02981]
 gi|290921091|gb|EFD98152.1| ExsB protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291095601|gb|EFE25862.1| exsB protein [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467639|gb|EFF10154.1| exsB protein [Staphylococcus aureus subsp. aureus M809]
 gi|294823913|gb|EFG40339.1| exsB protein [Staphylococcus aureus A9754]
 gi|294968575|gb|EFG44598.1| exsB protein [Staphylococcus aureus A8819]
 gi|295128676|gb|EFG58307.1| exsB protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296886819|gb|EFH25723.1| transcription regulator ExsB [Staphylococcus aureus subsp. aureus
          ATCC 51811]
 gi|297177828|gb|EFH37077.1| exsB protein [Staphylococcus aureus A8796]
 gi|297576660|gb|EFH95375.1| transcription regulator ExsB [Staphylococcus aureus subsp. aureus
          MN8]
 gi|298694041|gb|ADI97263.1| aluminum resistance protein [Staphylococcus aureus subsp. aureus
          ED133]
 gi|300886902|gb|EFK82104.1| transcription regulator ExsB [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302750610|gb|ADL64787.1| queuosine biosynthesis protein QueC [Staphylococcus aureus subsp.
          aureus str. JKD6008]
 gi|304339776|gb|EFM05721.1| transcription regulator ExsB [Staphylococcus aureus subsp. aureus
          ATCC BAA-39]
 gi|312438866|gb|ADQ77937.1| transcription regulator ExsB [Staphylococcus aureus subsp. aureus
          TCH60]
 gi|312829205|emb|CBX34047.1| queuosine biosynthesis protein queC [Staphylococcus aureus subsp.
          aureus ECT-R 2]
 gi|315129387|gb|EFT85380.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus CGS03]
 gi|315194328|gb|EFU24720.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus CGS00]
 gi|315197688|gb|EFU28023.1| ExsB family post-transcriptional regulator [Staphylococcus aureus
          subsp. aureus CGS01]
 gi|320139956|gb|EFW31817.1| ExsB protein [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320141954|gb|EFW33782.1| ExsB protein [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323438939|gb|EGA96674.1| aluminum resistance protein [Staphylococcus aureus O11]
 gi|323441588|gb|EGA99237.1| aluminum resistance protein [Staphylococcus aureus O46]
 gi|329313434|gb|AEB87847.1| 7-cyano-7-deazaguanine synthase [Staphylococcus aureus subsp.
          aureus T0131]
 gi|329724593|gb|EGG61100.1| queuosine biosynthesis protein QueC [Staphylococcus aureus subsp.
          aureus 21172]
 gi|329728517|gb|EGG64950.1| protein ExsB [Staphylococcus aureus subsp. aureus 21189]
 gi|329729639|gb|EGG66040.1| protein ExsB [Staphylococcus aureus subsp. aureus 21193]
          Length = 222

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     I+V  SGG DS   L  A       + F +++   ++ ++  R     E+    
Sbjct: 5  LNNEKAIVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DTEIEVAK 53

Query: 75 DVCSRLRIAHSVVS 88
           +     + H V+ 
Sbjct: 54 QIAQDQGMKHHVLD 67


>gi|270308430|ref|YP_003330488.1| argininosuccinate synthase [Dehalococcoides sp. VS]
 gi|270154322|gb|ACZ62160.1| argininosuccinate synthase [Dehalococcoides sp. VS]
          Length = 406

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 55/188 (29%), Gaps = 48/188 (25%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC------------LRETAKD 68
            +++A SGG D      A    L ++    +   A+++D              L+  AK 
Sbjct: 4   KVVLAYSGGLD----TSAAVKWLQEK--YGMDVIAVTIDVGNEKDFTLIKEKALKVGAKK 57

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM-------AAAREARYALISEHAKTINATL 121
              YV DVC           WK  K             A AR     ++ + A    AT 
Sbjct: 58  --AYVRDVCKEF---AEDYIWKAIKANAMYEGVYPLATALARPLIAKVMVDIALEEGATA 112

Query: 122 IMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           I    T   +DQ+     R           L  +     + +            RE    
Sbjct: 113 IAHGCTGKGNDQV-----RFDVGINTLAPHLKIIAPARQWGM-----------TREQTME 156

Query: 180 FLLQRNIS 187
           +  +  I 
Sbjct: 157 YAQKWGIP 164


>gi|54297636|ref|YP_124005.1| GMP synthase [Legionella pneumophila str. Paris]
 gi|81370447|sp|Q5X4I9|GUAA_LEGPA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|53751421|emb|CAH12839.1| hypothetical protein lpp1687 [Legionella pneumophila str. Paris]
          Length = 525

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 22/187 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + +      +   + VD   LR     E  
Sbjct: 220 IREQVGTEKVLLGLSGGVDSSVVAALLHRAIGE------QLVCVFVDTGLLRLN---EAE 270

Query: 72  YVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAA----REARYALISEHAKTINATL 121
            V       + I    V+ ++      K  T          R        E  K  +   
Sbjct: 271 QVLSMFGRHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEVFDEEAQKLTDIKW 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    +  + A   +        +   LNL +  P     ++++R   
Sbjct: 331 LAQGTIYPDVIESA--ATSTNDAAVVIKSHHNVGGLPDTLNLKLLEPIRELFKDEVRHVG 388

Query: 182 LQRNISW 188
           L+  +  
Sbjct: 389 LELGLPH 395


>gi|37521616|ref|NP_924993.1| hypothetical protein gll2047 [Gloeobacter violaceus PCC 7421]
 gi|35212614|dbj|BAC89988.1| gll2047 [Gloeobacter violaceus PCC 7421]
          Length = 278

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 22/121 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSD 75
             +LVA SGG DS  +       L DR+       A++        +     +++     
Sbjct: 17  DRVLVAYSGGVDSTLVAKVAFDALGDRAL------AVT------AASPSLMAEDLEEAVR 64

Query: 76  VCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
             +++ IAH ++          +          +   +  +   A      +++     D
Sbjct: 65  QAAQIGIAHEIIETTELDDPNYTSNPANRCYFCKSELHGRLVPLATARGIEVVVDGANLD 124

Query: 130 D 130
           D
Sbjct: 125 D 125


>gi|13472503|ref|NP_104070.1| tRNA-specific 2-thiouridylase MnmA [Mesorhizobium loti MAFF303099]
 gi|14023249|dbj|BAB49856.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Mesorhizobium loti MAFF303099]
          Length = 378

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 53/192 (27%), Gaps = 45/192 (23%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRETA---KDEVRYVSDVCSRL 80
           SGG DS  +   L     D     ++      DH     R  +     ++     V   L
Sbjct: 2   SGGVDSSVVAGLLKREGYDVVGVTLQLY----DHGAATHRAGSCCAGQDIDDARRVSETL 57

Query: 81  RIAHSVVSWKNSKPQTGLMAAAR----------------EARYALISEHAKTINATLIMT 124
            I H V+ ++    +  +   A                   ++A +   AK + A  + T
Sbjct: 58  GIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFADLLATAKELGADALAT 117

Query: 125 AH---------TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            H                    R      ++   L       +     ++  P     + 
Sbjct: 118 GHYIRSGANGAHR------ALYRPVDADRDQSYFLFATTQAQI----DYLRFPLGGLSKP 167

Query: 176 DIRSFLLQRNIS 187
            +R+   +  ++
Sbjct: 168 QVRAIAEEMGLT 179


>gi|152995561|ref|YP_001340396.1| argininosuccinate synthase [Marinomonas sp. MWYL1]
 gi|189046393|sp|A6VVI2|ASSY_MARMS RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|150836485|gb|ABR70461.1| Argininosuccinate synthase [Marinomonas sp. MWYL1]
          Length = 410

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 49/190 (25%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +++A SGG D S+        +  + +   + F+A   D        +EV        
Sbjct: 5   KKVVLAYSGGLDTSV----IAKWLQEEYNCEVVTFTA---DLGQ----GEEVEPARAKAQ 53

Query: 79  RLRI-AHSVVSWKNS----------KPQTGLMAA-------AREARYALISEHAKTINAT 120
            L I    +   +            +  T            AR      + E A    A 
Sbjct: 54  ALGIKEIYIEDLREEFVRDFVFPMFRANTIYEGEYLLGTSIARPLIAKRLIEIANETGAD 113

Query: 121 LI---MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            I    T    +DQ+     R +        G+  +     +DL            RE +
Sbjct: 114 AISHGATG-KGNDQV-----RFELGAYALKPGVKVIAPWREWDL----------TSRETL 157

Query: 178 RSFLLQRNIS 187
            ++  +  I 
Sbjct: 158 MAYCEEHKIP 167


>gi|58616792|ref|YP_195991.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ehrlichia ruminantium str. Gardel]
 gi|75356565|sp|Q5FF75|GUAA_EHRRG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|58416404|emb|CAI27517.1| GMP synthase [glutamine-hydrolyzing] [Ehrlichia ruminantium str.
           Gardel]
          Length = 528

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+  +  ++  +    ++ A+SGG DS       +  + D      +   + +D+  L
Sbjct: 204 SFIDDQQDAIKKQIGNKKVIAALSGGVDSSVAAALTYKAIGD------QLHCVFIDNGLL 257

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVS 88
           R    +EV  V  +  + L+I  ++V 
Sbjct: 258 R---YNEVEKVKQLFINELKIPVTIVD 281


>gi|57238805|ref|YP_179941.1| GMP synthase [Ehrlichia ruminantium str. Welgevonden]
 gi|58578732|ref|YP_196944.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Ehrlichia ruminantium str. Welgevonden]
 gi|81353082|sp|Q5HCA2|GUAA_EHRRW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|57160884|emb|CAH57786.1| GMP synthase [glutamine-hydrolyzing] [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417358|emb|CAI26562.1| GMP synthase [glutamine-hydrolyzing] [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 528

 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+  +  ++  +    ++ A+SGG DS       +  + D      +   + +D+  L
Sbjct: 204 SFIDDQQDAIKKQIGNKKVIAALSGGVDSSVAAALTYKAIGD------QLHCVFIDNGLL 257

Query: 63  RETAKDEVRYVSDV-CSRLRIAHSVVS 88
           R    +EV  V  +  + L+I  ++V 
Sbjct: 258 R---YNEVEKVKQLFINELKIPVTIVD 281


>gi|262201680|ref|YP_003272888.1| GMP synthase large subunit [Gordonia bronchialis DSM 43247]
 gi|262085027|gb|ACY20995.1| GMP synthase, large subunit [Gordonia bronchialis DSM 43247]
          Length = 535

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 33/193 (17%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSD 75
           +     +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   +++V++  D
Sbjct: 228 IGDGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRAGEREQVQH--D 279

Query: 76  VCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARYALISEHAKTIN-------- 118
                      V             S P+T      RE   +     A  +         
Sbjct: 280 FVGATGAKLVTVDAAETFLGELAGVSDPETKRKIIGREFIRSFEGAVADVLGDGAEAGEK 339

Query: 119 ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              ++    + D +E+             +        +  DL   +  P     ++++R
Sbjct: 340 VEFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPEDLEFSLVEPLRLLFKDEVR 394

Query: 179 SFLLQRNISWCED 191
           +   +  +   ED
Sbjct: 395 AVGRELGLP--ED 405


>gi|138896319|ref|YP_001126772.1| argininosuccinate synthase [Geobacillus thermodenitrificans NG80-2]
 gi|196249942|ref|ZP_03148637.1| Argininosuccinate synthase [Geobacillus sp. G11MC16]
 gi|166219967|sp|A4IRS3|ASSY_GEOTN RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|134267832|gb|ABO68027.1| Argininosuccinate synthase [Geobacillus thermodenitrificans NG80-2]
 gi|196210456|gb|EDY05220.1| Argininosuccinate synthase [Geobacillus sp. G11MC16]
          Length = 406

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 63/195 (32%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S+         L +R +      A  +D         ++ +V +   +
Sbjct: 5   KLVLAYSGGLDTSVA-----IKWLQERGY---DVIACCLDLG----EGKDLDFVKEKALK 52

Query: 80  LR-IAHSVVSWKNS-KPQTGLMAAAREARYA----------------LISEHAKTINATL 121
           +  I   V+  K+    +  L+A    A Y                  + E A+   A  
Sbjct: 53  VGAIKSYVIDVKDEFANEYALIALQANALYEGKYPLVSALSRPLIAKKLVEIAELEGA-- 110

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--------- 172
           +  AH                    G G     D + +++++    P L           
Sbjct: 111 VAVAH-----------------GCTGKG----NDQVRFEVSIKALNPDLDVIAPVREWSW 149

Query: 173 RREDIRSFLLQRNIS 187
            RE+   +  +  I 
Sbjct: 150 SREEEIEYAKKHGIP 164


>gi|94311745|ref|YP_584955.1| sulfate adenylyltransferase subunit 2 [Cupriavidus metallidurans
           CH34]
 gi|93355597|gb|ABF09686.1| sulfate adenylyltransferase, subunit 2 [Cupriavidus metallidurans
           CH34]
          Length = 323

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIA-LHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ +L   L +        ++ F  + +D  H   E  +   + V ++ +RL +
Sbjct: 52  FSGGKDSIVMLHLALKAFRLGDRKVELPFPLVHIDTGHNYPEVIQFRDQRVGELGARLVV 111

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S K    +      +R A  A+ + E  +      +M     D
Sbjct: 112 GHVEDSIKRGTVRLRKETDSRNAAQAVTLLETIEAHKFDALMGGARRD 159


>gi|73668711|ref|YP_304726.1| GMP synthase subunit B [Methanosarcina barkeri str. Fusaro]
 gi|121697126|sp|Q46D96|GUAAB_METBF RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|72395873|gb|AAZ70146.1| GMP synthase (glutamine-hydrolyzing) [Methanosarcina barkeri str.
           Fusaro]
          Length = 305

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 62/180 (34%), Gaps = 21/180 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +   +     ++A+SGG DS       H  +  R         I +D  L R+   + ++
Sbjct: 15  ISKEIKDGRAIIALSGGVDSSVCAELAHRAIGGRLQP------IYIDTGLMRKGETERIK 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTINATLIMTAHT 127
           ++    + L I ++   +  +          R+A       +  E A+ + A  ++    
Sbjct: 69  HIFSHMN-LDIVYAKDRFLAALKGITDPEEKRKAIGETFIRVFEEEARKLEADYLIQGTI 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + D++E           +    + G+   + +     I  P     ++++R       + 
Sbjct: 128 YPDRIE------SEGGIKSHHNVGGLPSVMDFKK---IVEPIEDLYKDEVREVAWALKLP 178


>gi|311067886|ref|YP_003972809.1| YkvJ protein [Bacillus atrophaeus 1942]
 gi|310868403|gb|ADP31878.1| YkvJ [Bacillus atrophaeus 1942]
          Length = 219

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          I+V  SGG DS   LL AL            +   ++  +  R     E+     +   L
Sbjct: 7  IVV-FSGGQDSTTCLLWALKEFE--------EVETVTFHYNQRHQ--QEIDVAKAIAEEL 55

Query: 81 RIAHSVVS 88
           + + ++ 
Sbjct: 56 GVKNHLLD 63


>gi|256839473|ref|ZP_05544982.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738403|gb|EEU51728.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 429

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-VCSR- 79
           + V+ SGG DS  LL      +   + G+ K     +D+ ++ +      YV     +  
Sbjct: 21  VYVSFSGGKDSGVLLNLCVDYIRRYAPGR-KLGVFHMDYEVQYS--QTTEYVEKVYAANS 77

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
             L I H  V +K     +      R           + +  + +
Sbjct: 78  DILDIYHCCVPFKVQTCTSMFQQYWRPWSEEYRDIWVREMPHSCL 122


>gi|255015391|ref|ZP_05287517.1| hypothetical protein B2_15888 [Bacteroides sp. 2_1_7]
 gi|298375179|ref|ZP_06985136.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
           3_1_19]
 gi|298267679|gb|EFI09335.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
           3_1_19]
          Length = 433

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-VCSR- 79
           + V+ SGG DS  LL      +   + G+ K     +D+ ++ +      YV     +  
Sbjct: 25  VYVSFSGGKDSGVLLNLCVDYIRRYAPGR-KLGVFHMDYEVQYS--QTTEYVEKVYAANS 81

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
             L I H  V +K     +      R           + +  + +
Sbjct: 82  DILDIYHCCVPFKVQTCTSMFQQYWRPWSEEYRDIWVREMPHSCL 126


>gi|325578653|ref|ZP_08148729.1| GMP synthase [Haemophilus parainfluenzae ATCC 33392]
 gi|325159692|gb|EGC71823.1| GMP synthase [Haemophilus parainfluenzae ATCC 33392]
          Length = 519

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 206 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 258


>gi|297627317|ref|YP_003689080.1| Sulfate adenylyltransferase subunit 2 (Sulfate adenylate
           transferase) (SAT) (ATP-sulfurylase small subunit)
           (Mitomycin biosynthesis protein V) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296923082|emb|CBL57666.1| Sulfate adenylyltransferase subunit 2 (Sulfate adenylate
           transferase) (SAT) (ATP-sulfurylase small subunit)
           (Mitomycin biosynthesis protein V) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 355

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 14/95 (14%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRET-A 66
           R  V  L +P  +L+  SGG DS+ +L            G++ F  + VD  H   E  A
Sbjct: 76  RETVGELEHP--VLL-FSGGKDSVVMLHLAAKAF---WPGRVPFPLLHVDTGHNFPEVLA 129

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA 101
             +         R+ +   V   ++      L   
Sbjct: 130 YRDA-----TAERMGLRLIVAKVQDYIDDGRLQER 159


>gi|293390362|ref|ZP_06634696.1| GMP synthase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950896|gb|EFE01015.1| GMP synthase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 519

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 206 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 258


>gi|261867873|ref|YP_003255795.1| GMP synthase [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413205|gb|ACX82576.1| gmp synthase (glutamine-hydrolyzing) [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 519

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 206 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 258


>gi|254881202|ref|ZP_05253912.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA]
 gi|319640212|ref|ZP_07994938.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A]
 gi|254833995|gb|EET14304.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA]
 gi|317388199|gb|EFV69052.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A]
          Length = 351

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 13/79 (16%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY---VSDVC 77
           +L+ +SGG+DS    + L     + +    +F             +++  Y      +C
Sbjct: 9  KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFY----------EKENDTEYLEDARALC 58

Query: 78 SRLRIAHSVVSWKNSKPQT 96
           RL I H     +++  +T
Sbjct: 59 ERLNIPHLTYDVRDTFRKT 77


>gi|237749831|ref|ZP_04580311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter bilis ATCC 43879]
 gi|229374581|gb|EEO24972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter bilis ATCC 43879]
          Length = 347

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 36/127 (28%)

Query: 24  VAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VSD 75
           VA+  SGG DS      L     +     +K                E ++         
Sbjct: 8   VALLMSGGVDSSYSAYLLQQQGYEVLGIYLKLH------------DKEEKHAVFIRNCEK 55

Query: 76  VCSRLRIAHSVVSWKNSKPQT----GLMAAAR------------EARYALISEHAKTINA 119
           VC  L +   ++  K    +      + +  R              ++ L    A     
Sbjct: 56  VCEFLGLEFKIIEAKEEFKKAVYNEFIESYKRGETPNPCALCNPLMKFGLALNAALGYGC 115

Query: 120 TLIMTAH 126
             I T H
Sbjct: 116 EYIATGH 122


>gi|187922695|ref|YP_001894337.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phytofirmans PsJN]
 gi|229486336|sp|B2SX74|MNMA_BURPP RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|187713889|gb|ACD15113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia phytofirmans PsJN]
          Length = 383

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 49/206 (23%), Gaps = 56/206 (27%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---S 74
               ++V +SGG DS      L     D     +K               D+  Y     
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 75  DV------CSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
           D          + I    V++                 A R          E ++    +
Sbjct: 52  DWIDVVSVADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----- 167
           HA ++ A  I T H              R     G            D + ++ R     
Sbjct: 112 HAMSLGAETIATGH----------YARVRQNERNGRFELLKAFDHTKDQSYFLHRLNQAQ 161

Query: 168 ------PFLRCRREDIRSFLLQRNIS 187
                 P     +  +R    Q  + 
Sbjct: 162 LSKTLFPLGEIPKTKVREIAEQIALP 187


>gi|109899268|ref|YP_662523.1| exsB protein [Pseudoalteromonas atlantica T6c]
 gi|123064352|sp|Q15RL9|QUEC_PSEA6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|109701549|gb|ABG41469.1| preQ(0) biosynthesis protein QueC [Pseudoalteromonas atlantica
          T6c]
          Length = 218

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS  +L               +  A+S ++  R +   E+ Y S  C  L
Sbjct: 4  KVVVIFSGGMDSFTVLNMAVK-------EGYEVHALSFNYGQRHS--KELDYASRACITL 54

Query: 81 RIAHSVVSWKNSKPQTG 97
           +AH ++         G
Sbjct: 55 GVAHKIIDISAINELIG 71


>gi|319401215|gb|EFV89430.1| queuosine biosynthesis protein queC [Staphylococcus epidermidis
          FRI909]
          Length = 223

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 15 SLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           L     ++V  SGG DS   L  A       + F +++   ++ ++  R     E+   
Sbjct: 5  DLNKEKALVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DTEIEVA 53

Query: 74 SDVCSRLRIAHSVVS 88
            +     + H ++ 
Sbjct: 54 KKIAKEQNLKHHILD 68


>gi|242242079|ref|ZP_04796524.1| ExsB family post-transcriptional regulator [Staphylococcus
          epidermidis W23144]
 gi|242234464|gb|EES36776.1| ExsB family post-transcriptional regulator [Staphylococcus
          epidermidis W23144]
          Length = 223

 Score = 41.0 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 15 SLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           L     ++V  SGG DS   L  A       + F +++   ++ ++  R     E+   
Sbjct: 5  DLNKEKALVV-FSGGQDSTTCLFYA------KKHFKEVEL--VTFNYGQRH--DTEIEVA 53

Query: 74 SDVCSRLRIAHSVVS 88
            +     + H ++ 
Sbjct: 54 KKIAKEQNLKHHILD 68


>gi|332857243|ref|XP_003316699.1| PREDICTED: LOW QUALITY PROTEIN: putative ATP-binding
          domain-containing protein 3-like protein-like [Pan
          troglodytes]
          Length = 370

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCL 62
          L   A + +  SGG DS  L   L ++        ++ +A    + H L
Sbjct: 48 LPPGAVVALGTSGGKDSTVLAHVLRTLAPGLGIL-LQLTAADKGIGHGL 95



 Score = 36.8 bits (84), Expect = 7.1,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 8/18 (44%)

Query: 125 AHTFDDQLETVYMRSQRD 142
            H  DD  ETV M   R 
Sbjct: 247 GHNADDMAETVLMNFLRG 264


>gi|299541809|ref|ZP_07052132.1| queuosine biosynthesis protein [Lysinibacillus fusiformis ZC1]
 gi|298725547|gb|EFI66188.1| queuosine biosynthesis protein [Lysinibacillus fusiformis ZC1]
          Length = 219

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          I+V  SGG DS   L        +         A++ D+  R   + E+     +   L 
Sbjct: 7  IVV-FSGGQDSTTCLFWAKERFEE-------IEAVTFDYGQRH--RLEIDCAKVITEELG 56

Query: 82 IAHSVVS 88
          I H ++ 
Sbjct: 57 IKHHILD 63


>gi|297798104|ref|XP_002866936.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312772|gb|EFH43195.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 182

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           +    ++  H  DD  ETV +   R              T   D  +   +PF    ++D
Sbjct: 126 LKVDKLVAGHNADDIAETVLLNILRGDIALSR---CTSITTGEDGPIPRCKPFKYTTKKD 182


>gi|224371642|ref|YP_002605806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfobacterium autotrophicum HRM2]
 gi|223694359|gb|ACN17642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfobacterium autotrophicum HRM2]
          Length = 365

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 57/199 (28%), Gaps = 57/199 (28%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS---------VD------------HC 61
            +A+SGG DS+     L     D          I          VD            H 
Sbjct: 31  AIAMSGGIDSLVAAHVLKRQGHD-------LVGIHFTTGFESEAVDLSSIEDQLDIKIHQ 83

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
           +         +   V     + + V ++   K     +   R  ++ ++++ AKT+ A  
Sbjct: 84  M----DLSAEFNRAV-----VDYFVKTYARGKTPNPCVVCNRTIKFGVLAQRAKTLGAEK 134

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGL----------SGMCDTILYDLNLWISRPFLR 171
           I T H              R  +  G+ L          S     +  +       P  R
Sbjct: 135 IATGH----------YAGTRTRSNGGIALVKGVDGVKDQSYFLAMLSQEQLKQAVFPLGR 184

Query: 172 CRREDIRSFLLQRNISWCE 190
             +E +R+      +   E
Sbjct: 185 MTKEQVRNIARDNRLMPVE 203


>gi|332521683|ref|ZP_08398136.1| sulfate adenylyltransferase, small subunit [Lacinutrix algicola
           5H-3-7-4]
 gi|332042772|gb|EGI78972.1| sulfate adenylyltransferase, small subunit [Lacinutrix algicola
           5H-3-7-4]
          Length = 296

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 1   MFLSPIESVRFFV---RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           M ++P+ES   ++    +  +   +L+  SGG DS+ L+             KI F  + 
Sbjct: 1   MTINPLESESIYIFREVAAQFEKPVLL-FSGGKDSITLVRLAQKAFYP---AKIPFPLMH 56

Query: 58  VD--HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA 105
           +D  H   ET +   R V ++   L + H   +    K +       R A
Sbjct: 57  IDTGHNFPETIEFRDRLVKELGLELIVRHVQDAIDQGKVK---EEEGRYA 103


>gi|315122142|ref|YP_004062631.1| GMP synthase [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495544|gb|ADR52143.1| GMP synthase [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 520

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 60/186 (32%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++  V    ++ A+SGG DS      ++  +          + + VDH   R+    EV 
Sbjct: 216 IKKQVGDERVICALSGGVDSSVAAFLIYEAIGK------NLTCVLVDHGFMRKN---EVD 266

Query: 72  YVSDVCSRL-RIAHSVVSWKNS-----KPQTGLMAAAR---EARYALISEHAKTINATLI 122
            V  +  +       VV          K         +   +    +  E A+ I     
Sbjct: 267 NVVGLFKKYPDFPLIVVDASERFIGKLKNVIDPEDKRKIIGKLFIEVFEEEAEKIGGAKF 326

Query: 123 MTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +   T   D +E+V   S        +        +   +N+ +  P     ++++R   
Sbjct: 327 LGQGTLYPDVIESV---SFFGGPSSVIKSHHNVGGLPEYMNMDLVEPLRDLFKDEVRLLG 383

Query: 182 LQRNIS 187
            +  +S
Sbjct: 384 KELGLS 389


>gi|261838653|gb|ACX98419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 51]
          Length = 342

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++     T      +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSTVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|94500816|ref|ZP_01307345.1| argininosuccinate synthase [Oceanobacter sp. RED65]
 gi|94427138|gb|EAT12119.1| argininosuccinate synthase [Oceanobacter sp. RED65]
          Length = 405

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 57/188 (30%), Gaps = 47/188 (25%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            I++A SGG D S+        +  + +   + F+A   D        +E+         
Sbjct: 6   KIVLAYSGGLDTSV----IAKWLQEEYNAEIVTFTA---DLGQ----GEELEPARKKAEA 54

Query: 80  LRIAHSVVS--------------WKNSKPQTGL----MAAAREARYALISEHAKTINATL 121
           + I    +               ++ +    G      + AR      + E A    A  
Sbjct: 55  MGIKEIFIDDLREEFARDFVFPMFRANAIYEGEYYLGTSIARPLIAKRLIEIANETGADA 114

Query: 122 IMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
           I    T   +DQ+     R +         +  +     +DLN           RE + +
Sbjct: 115 IAHGATGKGNDQV-----RFELGAYALSPNIQVIAPWREWDLN----------SREKLMA 159

Query: 180 FLLQRNIS 187
           +  + NI 
Sbjct: 160 YCEEHNIP 167


>gi|91085987|ref|XP_972131.1| PREDICTED: similar to tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Tribolium castaneum]
          Length = 417

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 24/127 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRS---FGKIKFSAISVDHCLRETAKDEVRYVSDV 76
             ++V +SGG DS    + L     D           +    D     +A  + +  + V
Sbjct: 5   RKVVVGISGGVDSAVAALLLKKRGYDIQGVFMQNWDIA----DEKGYCSADADYKDAALV 60

Query: 77  CSRLRIAHSVVSWKN---SKPQTGLMAAA-------------REARYALISEHAK-TINA 119
           C +L I  + V++     ++  + L+                R  ++    ++A+  + A
Sbjct: 61  CDKLDIKLTHVNFVKHYWNEVFSNLIKEYETGNTPNPDVLCNRNIKFNYFYKYARNELGA 120

Query: 120 TLIMTAH 126
             I T H
Sbjct: 121 DAIATGH 127


>gi|317182580|dbj|BAJ60364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F57]
          Length = 342

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++         A  +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|262306041|gb|ACY45613.1| gln amidotransferase [Ephemerella inconstans]
          Length = 197

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 12 FVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          +++  V    +L+ VSGG DS      L+  L        +  A+ +D
Sbjct: 36 YIKDTVGTNKVLLLVSGGVDSTVCAALLNKALPQD-----QVIAVHID 78


>gi|255525615|ref|ZP_05392549.1| exsB protein [Clostridium carboxidivorans P7]
 gi|296185502|ref|ZP_06853912.1| ExsB protein [Clostridium carboxidivorans P7]
 gi|255510705|gb|EET87011.1| exsB protein [Clostridium carboxidivorans P7]
 gi|296050336|gb|EFG89760.1| ExsB protein [Clostridium carboxidivorans P7]
          Length = 222

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 18/71 (25%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDVC 77
          ++V  SGG DS   L       + + F   +  A+S D    H L      E+     +C
Sbjct: 7  VVV-FSGGQDSTTCLF-----WAKKKFK--EVIAVSFDYNQKHKL------ELECAKSIC 52

Query: 78 SRLRIAHSVVS 88
           +  + H ++ 
Sbjct: 53 KKYNVEHHILD 63


>gi|150401530|ref|YP_001325296.1| putative ATP binding related protein [Methanococcus aeolicus
           Nankai-3]
 gi|150014233|gb|ABR56684.1| putative ATP binding related protein [Methanococcus aeolicus
           Nankai-3]
          Length = 302

 Score = 41.0 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 17/112 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-VSDVCSRLR 81
           ++A SGG DS+  L  L   L  R         I+VD    +   +E      ++   L 
Sbjct: 83  ILAFSGGKDSVVALYLLVKDLRIRPL------CITVD---NKYMSNEALINCYNITRYLN 133

Query: 82  IAHSVVSWKNSK-------PQTGLMAAAREARYALISEHAKTINATLIMTAH 126
           +   V++   +K                       +   AK++N   I++ H
Sbjct: 134 VDWMVINRDFTKLFEETILKGESPCRECSNKIMGELRGVAKSLNIDKIVSGH 185


>gi|308177177|ref|YP_003916583.1| sulfate adenylyltransferase small subunit [Arthrobacter
          arilaitensis Re117]
 gi|307744640|emb|CBT75612.1| sulfate adenylyltransferase small subunit [Arthrobacter
          arilaitensis Re117]
          Length = 307

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 3  LSPIES-----VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
          LS +E+     +R  V  L  P  +    SGG DS  LL       +      I F  + 
Sbjct: 16 LSALEAESIYIIREVVAELERPGLL---FSGGKDSAVLLHLAAKAFAP---AVIPFPVVH 69

Query: 58 VD--HCLRE 64
          +D  H  +E
Sbjct: 70 IDTGHNFQE 78


>gi|225025884|ref|ZP_03715076.1| hypothetical protein EUBHAL_00112 [Eubacterium hallii DSM 3353]
 gi|224956781|gb|EEG37990.1| hypothetical protein EUBHAL_00112 [Eubacterium hallii DSM 3353]
          Length = 221

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 18 YPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
            A ++V  SGG DS   L  AL            K  A+S D+   +    E+     +
Sbjct: 7  KDAAVVV-FSGGQDSTTCLFWALKRYK--------KVIALSFDY--HQKHVKELECAKKI 55

Query: 77 CSRLRIAHSV 86
          C    + H +
Sbjct: 56 CRDHEVEHHI 65


>gi|149915230|ref|ZP_01903758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. AzwK-3b]
 gi|149810951|gb|EDM70790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Roseobacter sp. AzwK-3b]
          Length = 379

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 60/218 (27%), Gaps = 52/218 (23%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--------AKD 68
                ++VA+SGG DS  +   L     D     ++      DH             A  
Sbjct: 16  PADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLY----DHG--AALAKKGACCAGI 69

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----------------REARYALISE 112
           ++     V   +   H V+ ++N      +   A                   ++  + E
Sbjct: 70  DIHDARRVAEDMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLE 129

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTIL----------YDLN 162
            A+ ++A  + T H             QR     G  L    D              +  
Sbjct: 130 TARDLDADCMATGH-----------YIQRKMGAHGPELHCAADAARDQSYFLFSTTPEQL 178

Query: 163 LWISRPFLRC-RREDIRSFLLQRNISWCEDPSNTDDRF 199
            ++  P      +   R    +  +   + P + D  F
Sbjct: 179 DFLRFPLGHLPSKHATRELAARYGLKVADKPDSQDICF 216


>gi|229525412|ref|ZP_04414817.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae bv. albensis
           VL426]
 gi|229338993|gb|EEO04010.1| GMP synthase [glutamine-hydrolyzing] [Vibrio cholerae bv. albensis
           VL426]
          Length = 517

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 68/196 (34%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  V    +++ +SGG DS  + + +H  + +R       + + VD+ L 
Sbjct: 204 SIIEDAVARIKEQVGDDEVILGLSGGVDSSVVAMLVHRAIGNR------LTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E   V +    +  +    V  +           +P+       R        E
Sbjct: 258 RLN---EGEQVMEMFGDKFGLNIIKVDAEERFLKALEGIDEPEAKRKTIGRVFVEVFDEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLSNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|71278544|ref|YP_269637.1| exsB protein [Colwellia psychrerythraea 34H]
 gi|110816204|sp|Q47ZY2|QUEC2_COLP3 RecName: Full=7-cyano-7-deazaguanine synthase 2; AltName:
          Full=7-cyano-7-carbaguanine synthase 2; AltName:
          Full=PreQ(0) synthase 2; AltName: Full=Queuosine
          biosynthesis protein queC 2
 gi|71144284|gb|AAZ24757.1| exsB protein [Colwellia psychrerythraea 34H]
          Length = 219

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            ++V  SGG DS     AL+  + +         A+S D+   +    E+ Y  +VC+ 
Sbjct: 2  KKLVVIYSGGMDS---FTALNKAVKE----GFDVYALSFDYG--QKHNKELIYAQNVCNE 52

Query: 80 LRIAHSVVSWK 90
          L + H ++  K
Sbjct: 53 LNVPHKILDIK 63


>gi|30248125|ref|NP_840195.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Nitrosomonas europaea ATCC 19718]
 gi|44887949|sp|Q82XZ6|GUAA_NITEU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|30180010|emb|CAD84005.1| guaA; GMP synthetase [Nitrosomonas europaea ATCC 19718]
          Length = 519

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 31/191 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +++ +SGG DS      +H  + D      +   + VD+  LR     E +
Sbjct: 215 IRARVGNDKVVLGLSGGVDSSVAAALIHRAIGD------QLVCVFVDNGLLRLN---EAK 265

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-----------PQTGLMAAAREARYALISEHAKTINAT 120
            + +  SR  +A +V+     +           P+       RE       E  K  NA 
Sbjct: 266 QIMETFSR-NLAVNVIYIDAGRQFLEQLKGITDPEQKRRTIGREFVEIFQQEAEKIENAK 324

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGL---SGMCDTILYDLNLWISRPFLRCRREDI 177
            +     + D +E+           K  G+         +   L+L +  P     ++++
Sbjct: 325 WLAQGTIYPDVIESA------GSHTKKAGVIKSHHNVGGLPETLHLKLLEPLRELFKDEV 378

Query: 178 RSFLLQRNISW 188
           R   L   +  
Sbjct: 379 RELGLALGLPH 389


>gi|297170477|gb|ADI21507.1| ATP-utilizing enzymes of the PP-loop superfamily [uncultured
           verrucomicrobium HF0070_15G23]
          Length = 274

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 47/138 (34%), Gaps = 25/138 (18%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           L+ ++S+R  +R        LVA SGG DS  L +  H  L DR    I           
Sbjct: 6   LNKLDSLRAVLRGY---GSCLVAYSGGVDSALLAVVAHEQLGDRMLAVI----------- 51

Query: 63  RETA----KDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTGL---MAAAREARYALISE 112
              +    + E+     +     I   ++    + NS+ Q+         +   ++ +  
Sbjct: 52  -ADSPSLPRRELSEAKLLAVEHAIPLHILHTSEFDNSEYQSNPVNRCFYCKHELFSHLKP 110

Query: 113 HAKTINATLIMTAHTFDD 130
            A     ++I       D
Sbjct: 111 LAIDRKMSVIAYGENVSD 128


>gi|317125511|ref|YP_004099623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Intrasporangium calvum DSM 43043]
 gi|315589599|gb|ADU48896.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Intrasporangium calvum DSM 43043]
          Length = 365

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 27/129 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAK-----DEVRYV 73
            ++ A+SGG DS      +     D     +    SA +    LRE+A+     ++    
Sbjct: 2   RVVAAMSGGVDSAVAAARMLDAGHDVVGVHLALSQSAAT----LRESARGCCTIEDAGDA 57

Query: 74  SDVCSRLRIAHSV----VSWKNSKPQTGLMAAAR------------EARYALISEHAKTI 117
             V   L I   V      ++    +      AR            + ++A + + A  +
Sbjct: 58  RRVADVLGIPFYVWDMAERFRRDVVEDFTAEYARGRTPNPCLRCNEKIKFAALLDKAIAL 117

Query: 118 NATLIMTAH 126
               + T H
Sbjct: 118 GFDAVATGH 126


>gi|262165079|ref|ZP_06032816.1| GMP synthase [glutamine-hydrolyzing] [Vibrio mimicus VM223]
 gi|262024795|gb|EEY43463.1| GMP synthase [glutamine-hydrolyzing] [Vibrio mimicus VM223]
          Length = 491

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  V    +++ +SGG DS  + + +H  + DR       + + VD+ L 
Sbjct: 178 SIIEDAVARIKEQVGNDEVILGLSGGVDSSVVAMLVHRAIGDR------LTCVFVDNGLL 231

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E + V D    +  +    V  +           +P+       R        E
Sbjct: 232 RLN---EGQQVMDMFGDKFGLNIIKVDAEERFLKALEGIDEPEAKRKTIGRVFVEVFDEE 288

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 289 SKKLSNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMGLVEPLREL 345

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 346 FKDEVRKIGLELGLPY 361


>gi|262172162|ref|ZP_06039840.1| GMP synthase [glutamine-hydrolyzing] [Vibrio mimicus MB-451]
 gi|261893238|gb|EEY39224.1| GMP synthase [glutamine-hydrolyzing] [Vibrio mimicus MB-451]
          Length = 517

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  V    +++ +SGG DS  + + +H  + DR       + + VD+ L 
Sbjct: 204 SIIEDAVARIKEQVGNDEVILGLSGGVDSSVVAMLVHRAIGDR------LTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E + V D    +  +    V  +           +P+       R        E
Sbjct: 258 RLN---EGQQVMDMFGDKFGLNIIKVDAEERFLKALDGIDEPEAKRKTIGRVFVEVFDEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLSNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|258619965|ref|ZP_05715005.1| GMP synthase/glutamine amidotransferase protein [Vibrio mimicus
           VM573]
 gi|258587698|gb|EEW12407.1| GMP synthase/glutamine amidotransferase protein [Vibrio mimicus
           VM573]
          Length = 517

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  V    +++ +SGG DS  + + +H  + DR       + + VD+ L 
Sbjct: 204 SIIEDAVARIKEQVGNDEVILGLSGGVDSSVVAMLVHRAIGDR------LTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E + V D    +  +    V  +           +P+       R        E
Sbjct: 258 RLN---EGQQVMDMFGDKFGLNIIKVDAEERFLKALEGIDEPEAKRKTIGRVFVEVFDEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLSNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|258627197|ref|ZP_05721985.1| GMP synthase/glutamine amidotransferase protein [Vibrio mimicus
           VM603]
 gi|258580499|gb|EEW05460.1| GMP synthase/glutamine amidotransferase protein [Vibrio mimicus
           VM603]
          Length = 517

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  V    +++ +SGG DS  + + +H  + DR       + + VD+ L 
Sbjct: 204 SIIEDAVARIKEQVGNDEVILGLSGGVDSSVVAMLVHRAIGDR------LTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E + V D    +  +    V  +           +P+       R        E
Sbjct: 258 RLN---EGQQVMDMFGDKFGLNIIKVDAEERFLKALEGIDEPEAKRKTIGRVFVEVFDEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLSNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|296138640|ref|YP_003645883.1| GMP synthase, large subunit [Tsukamurella paurometabola DSM 20162]
 gi|296026774|gb|ADG77544.1| GMP synthase, large subunit [Tsukamurella paurometabola DSM 20162]
          Length = 519

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 66/180 (36%), Gaps = 28/180 (15%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR--YVSDVCSR 79
           +  +SGG DS     A+ + L  R+ G  + + + VDH  LR+  +++V+  +V+   +R
Sbjct: 221 ICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRQGEREQVQKDFVAATGAR 274

Query: 80  LRIAHSVVSWKNSKPQTGLMAAARE---ARYALIS-EHAKTINATLIMTAHTFDDQLE-- 133
           L      V+    +     +A   +    R  +          A   +   T D ++E  
Sbjct: 275 L------VTVDAEETFLSRLAGVSDPETKRKTIGELFIRSFEGAVSEVVG-TADAKVEFL 327

Query: 134 ---TVYMRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
              T+Y          G            +  DL   +  P     ++++R+   +  + 
Sbjct: 328 VQGTLYPDVVESGGGAGTANIKSHHNVGGLPEDLEFTLVEPLRLLFKDEVRAVGRELGLP 387


>gi|218779733|ref|YP_002431051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761117|gb|ACL03583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 356

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 35/193 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-----DHCLRETAKDEVRYVS 74
           + I +A+SGG DSM     L     D          I       +             ++
Sbjct: 3   SRIAIAMSGGVDSMISAYLLKQTCRDM-------VGIHFITGFENEGAPPGPDGVPEPLA 55

Query: 75  DVCSRLRIAHSVVSWKNS---------------KPQTGLMAAA-REARYALISEHAK-TI 117
                L +   VV+ +                            R  ++  + + A+   
Sbjct: 56  RASKELDLPIEVVNLQEEFHTHVVAPFVDTYLKGRTPNPCMVCNRTVKFGALLDAARNRF 115

Query: 118 NATLIMTAHTFD---DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           NA  I T H      D       R  +    K      +       L   +  P     +
Sbjct: 116 NAEKIATGHYARVRPDSAGRF--RLVKGADLKKDQSYFLGFLSQAQLGAAVF-PLGEFTK 172

Query: 175 EDIRSFLLQRNIS 187
           + IR   ++  + 
Sbjct: 173 DQIREKAVELGLD 185


>gi|133919930|emb|CAM12490.1| hypothetical protein [uncultured bacterium]
          Length = 521

 Score = 41.0 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + + + VD+  LR   +++V 
Sbjct: 217 IRHQVGKDEVILGLSGGVDSSVTAALIHRAIGD------QLTCVFVDNGLLRLHEREQVA 270

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
                   + +   VV   +           P+       R        E  K  NA  +
Sbjct: 271 --QTFRDNMGMKLIVVDASDRFMDALAGVTDPEAKRKIIGRLFVEVFQEEAEKLQNAKWL 328

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      +    + +        +   L+L +  P     ++++R   +
Sbjct: 329 AQGTIYPDVIES---NGAKTKKAQTIKSHHNVGGLPDTLHLKLLEPLRELFKDEVRELGI 385

Query: 183 QRNIS 187
              + 
Sbjct: 386 ALGLP 390


>gi|330506692|ref|YP_004383120.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanosaeta
           concilii GP-6]
 gi|328927500|gb|AEB67302.1| thiamine biosynthesis/tRNA modification protein ThiI [Methanosaeta
           concilii GP-6]
          Length = 399

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 45/182 (24%), Gaps = 44/182 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--DEVRYVSDVC 77
             +L  +SGG DS      +              S +  D   R  A   D+ +    V 
Sbjct: 182 GRMLAMISGGIDSPVAAWMMMR-------RGCTVSLLHFDS--RPYADSIDQSKRCVQVL 232

Query: 78  SRL----RIAHSVVSWKNSKPQ------TGLMAAAREARYALISEHAKTINATLIMT--- 124
           +      +I    V  K    +             R   Y + ++  +   A  ++T   
Sbjct: 233 AEWTCGRKINFITVPIKKGIEKIQMHYPRATCILCRRLMYRIAAQVMEKEGALGVVTGYS 292

Query: 125 -AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
                    E +                         + + I  P +   + +I     +
Sbjct: 293 MGQVASQTAENIL-------------------AEQAAIGVPIYHPLIAMDKSEIIDLARK 333

Query: 184 RN 185
             
Sbjct: 334 IG 335


>gi|319775905|ref|YP_004138393.1| glutamine-hydrolyzing GMP synthase [Haemophilus influenzae F3047]
 gi|329123760|ref|ZP_08252320.1| GMP synthase [Haemophilus aegyptius ATCC 11116]
 gi|317450496|emb|CBY86713.1| glutamine-hydrolyzing GMP synthase [Haemophilus influenzae F3047]
 gi|327469959|gb|EGF15424.1| GMP synthase [Haemophilus aegyptius ATCC 11116]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|319896560|ref|YP_004134753.1| glutamine-hydrolyzing gmp synthase [Haemophilus influenzae F3031]
 gi|317432062|emb|CBY80411.1| glutamine-hydrolyzing GMP synthase [Haemophilus influenzae F3031]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|315634475|ref|ZP_07889760.1| GMP synthase [Aggregatibacter segnis ATCC 33393]
 gi|315476702|gb|EFU67449.1| GMP synthase [Aggregatibacter segnis ATCC 33393]
          Length = 519

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 206 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 258


>gi|301168875|emb|CBW28468.1| GMP synthetase (glutamine aminotransferase) [Haemophilus influenzae
           10810]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|301156025|emb|CBW15496.1| GMP synthetase (glutamine aminotransferase) [Haemophilus
           parainfluenzae T3T1]
          Length = 519

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 206 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 258


>gi|262402847|ref|ZP_06079408.1| GMP synthase [glutamine-hydrolyzing] [Vibrio sp. RC586]
 gi|262351629|gb|EEZ00762.1| GMP synthase [glutamine-hydrolyzing] [Vibrio sp. RC586]
          Length = 517

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  V    +++ +SGG DS  + + +H  + DR       + + VD+ L 
Sbjct: 204 SIIEDAVARIKEQVGNDEVILGLSGGVDSSVVAMLVHRAIGDR------LTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E + V D    +  +    V  +           +P+       R        E
Sbjct: 258 RLN---EGQQVMDMFGDKFGLNIIKVDAEERFLKALEGIDEPEAKRKTIGRVFVEVFDEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLKNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|261212132|ref|ZP_05926418.1| GMP synthase [glutamine-hydrolyzing] [Vibrio sp. RC341]
 gi|260838740|gb|EEX65391.1| GMP synthase [glutamine-hydrolyzing] [Vibrio sp. RC341]
          Length = 517

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     ++  V    +++ +SGG DS  + + +H  + DR       + + VD+ L 
Sbjct: 204 SIIEDAVARIKEQVGNDEVILGLSGGVDSSVVAMLVHRAIGDR------LTCVFVDNGLL 257

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISE 112
           R     E + V D    +  +    V  +           +P+       R        E
Sbjct: 258 RLN---EGQQVMDMFGDKFGLNIIKVDAEERFLKALEGIDEPEAKRKTIGRVFVEVFDEE 314

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+    + +      +        +  D+ + +  P    
Sbjct: 315 SKKLKNAKWLAQGTIYPDVIES---AASKTGKAHVIKSHHNVGGLPDDMKMGLVEPLREL 371

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 372 FKDEVRKIGLELGLPY 387


>gi|260582892|ref|ZP_05850677.1| bifunctional GMP synthase/glutamine amidotransferase [Haemophilus
           influenzae NT127]
 gi|260094105|gb|EEW78008.1| bifunctional GMP synthase/glutamine amidotransferase [Haemophilus
           influenzae NT127]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|229844928|ref|ZP_04465065.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 6P18H1]
 gi|229812062|gb|EEP47754.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 6P18H1]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|241949633|ref|XP_002417539.1| GMP synthetase, putative; glutamine amidotransferase, putative
           [Candida dubliniensis CD36]
 gi|223640877|emb|CAX45194.1| GMP synthetase, putative [Candida dubliniensis CD36]
          Length = 530

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I++    ++ LV P A ++ AVSGG DS      +   + DR      F AI VD+  
Sbjct: 212 NFIDTEIARIKKLVGPTAEVIGAVSGGVDSTVGAKIMKEAIGDR------FHAIYVDNGV 265

Query: 62  LRETAKDEVRYVSDVCSR-LRIAHSVVS 88
           +R+    E   V       L I  +VV 
Sbjct: 266 MRKN---ETESVKKTLDEGLGINLTVVD 290


>gi|148825494|ref|YP_001290247.1| GMP synthase [Haemophilus influenzae PittEE]
 gi|229846311|ref|ZP_04466419.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 7P49H1]
 gi|226739626|sp|A5UAR3|GUAA_HAEIE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148715654|gb|ABQ97864.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittEE]
 gi|229810404|gb|EEP46122.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 7P49H1]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|145637232|ref|ZP_01792894.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittHH]
 gi|145269677|gb|EDK09618.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittHH]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|145640142|ref|ZP_01795726.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae R3021]
 gi|145274728|gb|EDK14590.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 22.4-21]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|145632465|ref|ZP_01788199.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 3655]
 gi|145635129|ref|ZP_01790834.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittAA]
 gi|144986660|gb|EDJ93212.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 3655]
 gi|145267550|gb|EDK07549.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittAA]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|145631106|ref|ZP_01786881.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae R3021]
 gi|144983391|gb|EDJ90873.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae R3021]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|187922974|ref|YP_001894616.1| sulfate adenylyltransferase subunit 2 [Burkholderia phytofirmans
           PsJN]
 gi|187714168|gb|ACD15392.1| Sulfate adenylyltransferase [Burkholderia phytofirmans PsJN]
          Length = 320

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSVL--SDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L                + F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLHLALKAFGIGANRKTVLPFPLVHIDTGHNYDEVIDFRDRRAKEIGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K    +      +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVRLRRELDSRNAAQAVTLLETIEEYGYTALIGGARRD 156


>gi|78048041|ref|YP_364216.1| GMP synthase [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|91206839|sp|Q3BSP7|GUAA_XANC5 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|78036471|emb|CAJ24162.1| glutamine amidotransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 521

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + D      K + + VD   LR +     +
Sbjct: 217 VREQVGDDEVILGLSGGVDSSVVAALLHKAIGD------KLTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    V     +           A R+    L  E          NA  
Sbjct: 271 AM---FAEHMGVKVIRVNAADRYFAKLEGVSDPEAKRKIIGNLFVEIFDEESNKLANAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRRLG 384

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 385 VELGLP 390


>gi|16272185|ref|NP_438394.1| GMP synthase [Haemophilus influenzae Rd KW20]
 gi|260580893|ref|ZP_05848718.1| bifunctional GMP synthase/glutamine amidotransferase [Haemophilus
           influenzae RdAW]
 gi|1170124|sp|P44335|GUAA_HAEIN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|1573186|gb|AAC21891.1| GMP synthase (guaA) [Haemophilus influenzae Rd KW20]
 gi|260092516|gb|EEW76454.1| bifunctional GMP synthase/glutamine amidotransferase [Haemophilus
           influenzae RdAW]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|309972631|gb|ADO95832.1| GMP synthetase (glutamine-hydrolyzing) [Haemophilus influenzae
           R2846]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|68464843|ref|XP_723499.1| hypothetical protein CaO19.4813 [Candida albicans SC5314]
 gi|68465220|ref|XP_723309.1| hypothetical protein CaO19.12276 [Candida albicans SC5314]
 gi|74587961|sp|Q5APF2|GUAA_CANAL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|46445336|gb|EAL04605.1| hypothetical protein CaO19.12276 [Candida albicans SC5314]
 gi|46445533|gb|EAL04801.1| hypothetical protein CaO19.4813 [Candida albicans SC5314]
 gi|238878638|gb|EEQ42276.1| GMP synthase [Candida albicans WO-1]
          Length = 530

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC- 61
           + I++    ++ LV P A ++ AVSGG DS      +   + DR      F AI VD+  
Sbjct: 212 NFIDTEIARIKKLVGPTAEVIGAVSGGVDSTVGAKIMKEAIGDR------FHAIYVDNGV 265

Query: 62  LRETAKDEVRYVSDVCSR-LRIAHSVVS 88
           +R+    E   V       L I  +VV 
Sbjct: 266 MRKN---ETESVKKTLDEGLGINLTVVD 290


>gi|67923165|ref|ZP_00516654.1| Conserved hypothetical protein 268 [Crocosphaera watsonii WH 8501]
 gi|67855007|gb|EAM50277.1| Conserved hypothetical protein 268 [Crocosphaera watsonii WH 8501]
          Length = 276

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 59/197 (29%), Gaps = 36/197 (18%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +  ++   + +      L+A SGG DS  +    + VL DR+ G    +A+    
Sbjct: 1   MLTDKLTQLQTIFKQM---ERALIAYSGGIDSTLVAKVAYDVLGDRALG---VTAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEH 113
               +   +E+       + + I+H +V+                    +   +  +   
Sbjct: 51  --SPSLLPEELEDAKIQAATIGISHELVNTHEMDNPNYTSNPVNRCYFCKSELHDTLKPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A       ++     DD      ++  R          G+           +    +   
Sbjct: 109 ALKRGYPYVVDGLNADD------LQDYR---------PGIQAAKERGARSPLVE--VGIT 151

Query: 174 REDIRSFLLQRNISWCE 190
           + ++R       + W +
Sbjct: 152 KLEVRQLSQGLGLPWWD 168


>gi|68248831|ref|YP_247943.1| GMP synthase [Haemophilus influenzae 86-028NP]
 gi|145628537|ref|ZP_01784337.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 22.1-21]
 gi|145639865|ref|ZP_01795466.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittII]
 gi|81336754|sp|Q4QNW4|GUAA_HAEI8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|68057030|gb|AAX87283.1| glutamine-hydrolyzing GMP synthase [Haemophilus influenzae
           86-028NP]
 gi|144979007|gb|EDJ88693.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae 22.1-21]
 gi|145271083|gb|EDK10999.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittII]
 gi|309750359|gb|ADO80343.1| GMP synthetase (glutamine-hydrolyzing) [Haemophilus influenzae
           R2866]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|291278883|ref|YP_003495718.1| NAD(+) synthase [Deferribacter desulfuricans SSM1]
 gi|290753585|dbj|BAI79962.1| NAD(+) synthase [Deferribacter desulfuricans SSM1]
          Length = 275

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 17/77 (22%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-----RETAKDEVRYVS 74
           +++V +SGG DS     AL + L+  + GK +  A    + L      + + D+ + V+
Sbjct: 31 KNVVVGLSGGIDS-----ALSATLATLALGKDRVYA----YALPYKTSSKESLDDAKLVA 81

Query: 75 DVCSRLRIAHSVVSWKN 91
          D    L +   ++   +
Sbjct: 82 DF---LGVNFEIIEITD 95


>gi|262066732|ref|ZP_06026344.1| GMP synthase [Fusobacterium periodonticum ATCC 33693]
 gi|291379531|gb|EFE87049.1| GMP synthase [Fusobacterium periodonticum ATCC 33693]
          Length = 512

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 25/198 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IESTVKNIKETVGNKQVILGLSGGVDSSVAAALINKAIGR------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +V ++   + I       +        + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFDMNIKCVNAEERFLTKLAGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D +E+V ++      +    + G+ + + ++    +  P     +
Sbjct: 313 KIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFE----LLEPLRELFK 368

Query: 175 EDIRSFLLQRNIS-WCED 191
           +++R    +  I  +  D
Sbjct: 369 DEVRKVGRELGIPDYMVD 386


>gi|45358644|ref|NP_988201.1| putative LPS biosynthesis protein WbpG [Methanococcus maripaludis
           S2]
 gi|45047510|emb|CAF30637.1| putative LPS biosynthesis protein WbpG [Methanococcus maripaludis
           S2]
          Length = 370

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 20/116 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DS  +   +  +        +K  A+ +D+     ++  +  + +   +L I
Sbjct: 69  IIGVSGGVDSTYVAYLVKKL-------GLKPLAVHLDNGW--NSELAIMNIENTLKKLDI 119

Query: 83  AHS--VVSWKN---------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHT 127
                V++W+                L      A  A + E A       I++ H 
Sbjct: 120 DLYTRVLNWEEFKDLQLSFLKASVPDLEIPTDHAIIATLYEVAHKFGIKYIISGHN 175


>gi|315924503|ref|ZP_07920724.1| argininosuccinate synthase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622207|gb|EFV02167.1| argininosuccinate synthase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 410

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 86/257 (33%), Gaps = 30/257 (11%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVCS 78
             +++A SGG D+         V   +         + VD    +     E + +    S
Sbjct: 5   KKVILAYSGGLDTTT------IVPWLKETYNYDVICVCVDVGQGKETNGLEEKALKSGAS 58

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINATLIM-TAHTFDDQLETVY 136
           +  I + +  +        L A A  E +Y L +  A+ + + +++  AH   ++ E + 
Sbjct: 59  KCYIVNVIDEFVEEYCWPALKADAVYEKKYLLGTSLARPLISKVLVDYAH--KEEAEAI- 115

Query: 137 MRSQRDYAEKGMG---LSGMCDTILYDLNLWISRPFLRC---RREDIRSFLLQRNISWCE 190
                 +   G G   +         D  L I  P+       RED+  F ++ +I    
Sbjct: 116 -----CHGATGKGNDQVRFELGIGALDPQLKIIAPWREWDLQSREDLMDFCIEHDIKV-- 168

Query: 191 DPSNTDDRFER--VRVR--RFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTVHM 246
             ++ D  + R    +       +++  ++    K    +   +N          +    
Sbjct: 169 -STSHDQSYSRDTNLLHMSHEGLELEDPSIEPNYKHILRITNALNETPDEAEEIKIEFVK 227

Query: 247 RSIIAISQDILNIDSTL 263
              +AI+   ++    L
Sbjct: 228 GEPVAINDQKMSPRKIL 244


>gi|315636127|ref|ZP_07891381.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
 gi|315479488|gb|EFU70167.1| LPS biosynthesis protein WbpG [Arcobacter butzleri JV22]
          Length = 381

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLR 81
           ++ +SGG DS  L + L+          I+   + VD       A   +  + + C    
Sbjct: 72  ILGLSGGVDSSYLALKLYE-------AGIRPLVVHVDGGWNSELAVQNIENIVNYC-GWH 123

Query: 82  IAHSVVSWKNSK 93
           +   V+ W+  +
Sbjct: 124 LHTIVIDWEEMR 135


>gi|303258081|ref|ZP_07344089.1| GMP synthase [Burkholderiales bacterium 1_1_47]
 gi|330998706|ref|ZP_08322435.1| GMP synthase domain protein [Parasutterella excrementihominis YIT
           11859]
 gi|302859100|gb|EFL82183.1| GMP synthase [Burkholderiales bacterium 1_1_47]
 gi|329576445|gb|EGG57957.1| GMP synthase domain protein [Parasutterella excrementihominis YIT
           11859]
          Length = 521

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 62/185 (33%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS      +H  + D      + S + VD+  LR   +++V 
Sbjct: 217 IRHQVGKDEVILGLSGGVDSSVTAALIHRAIGD------QLSCVFVDNGLLRLHEREQVA 270

Query: 72  YVSDVCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHAKTINATLI 122
                   + +   VV   +           P+       R        E  K  NA  +
Sbjct: 271 --QTFRDNMGMKLIVVDASDRFMDALSGVTDPEAKRKIIGRLFVEVFQEEAEKLQNAKWL 328

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                + D +E+      +    + +        +   L+L +  P     ++++R   +
Sbjct: 329 AQGTIYPDVIES---NGAKTKKAQTIKSHHNVGGLPDTLHLKLLEPLRELFKDEVRELGI 385

Query: 183 QRNIS 187
              + 
Sbjct: 386 ALGLP 390


>gi|157736939|ref|YP_001489622.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
 gi|157698793|gb|ABV66953.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
          Length = 381

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLR 81
           ++ +SGG DS  L + L+          I+   + VD       A   +  + + C    
Sbjct: 72  ILGLSGGVDSSYLALKLYE-------AGIRPLVVHVDGGWNSELAVQNIENIVNYC-GWH 123

Query: 82  IAHSVVSWKNSK 93
           +   V+ W+  +
Sbjct: 124 LHTIVIDWEEMR 135


>gi|3929020|gb|AAC79759.1| putative GMP synthase [Haemophilus ducreyi]
          Length = 368

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 55  NIIEDAVAKIKQKVGNDQVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 107


>gi|33152557|ref|NP_873910.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus ducreyi 35000HP]
 gi|44887940|sp|Q7VLE9|GUAA_HAEDU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33148781|gb|AAP96299.1| GMP synthase, glutamine-hydrolyzing [Haemophilus ducreyi 35000HP]
          Length = 523

 Score = 41.0 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVAKIKQKVGNDQVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|294783350|ref|ZP_06748674.1| GMP synthase [Fusobacterium sp. 1_1_41FAA]
 gi|294480228|gb|EFG28005.1| GMP synthase [Fusobacterium sp. 1_1_41FAA]
          Length = 512

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 25/198 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IESTVKQIKETVGNKQVILGLSGGVDSSVAAALINKAIGR------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +V ++   + I       +        + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFDMNIKCVNAEERFLSKLAGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D +E+V ++      +    + G+ + + ++    +  P     +
Sbjct: 313 KIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFE----LLEPLRELFK 368

Query: 175 EDIRSFLLQRNIS-WCED 191
           +++R    +  I  +  D
Sbjct: 369 DEVRKVGRELGIPDYMVD 386


>gi|168705515|ref|ZP_02737792.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 514

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 61/204 (29%), Gaps = 39/204 (19%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE+    +R  V    ++  +SGG DS      L   +        + + I VD+ L RE
Sbjct: 203 IENTVAEIRRKVGNKRVICGLSGGVDSSVCAALLVKAI------GPQVACIYVDNGLMRE 256

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA--------REARYALISEHAKT 116
               E   V                     +  L A A        R+    +  +  K 
Sbjct: 257 G---ETELVKHTFRDW---FKADLHAVDAGERFLTALAGVTDPQQKRKIIGKVFIDVFKE 310

Query: 117 I-----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISR 167
                 +A  +     + D +E+         +  G      L      +  +L   +  
Sbjct: 311 EAKSIPDAHFLAQGTLYPDVIES-------GGSPDGPAATIKLHHNVGGLPAELGFELIE 363

Query: 168 PFLRCRREDIRSFLLQRNISWCED 191
           P     ++++R    +  +   ED
Sbjct: 364 PLRDLFKDEVRHLGTELGLP--ED 385


>gi|162148152|ref|YP_001602613.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|205816818|sp|A9HMI3|MNMA_GLUDA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|161786729|emb|CAP56312.1| putative tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 361

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 29/129 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-------DEVRYV 73
            I+VA+SGG DS  +   L +   +     ++       +  RE+A+        ++   
Sbjct: 2   RIMVAMSGGVDSSVVAARLVAEGHEVVGATLQL------YDSRESARKGACCAGRDIHDA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----------------YALISEHAKTI 117
             V  RL I H V+  +    Q+ +   A                    +  +   A+ +
Sbjct: 56  RRVADRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGIARDL 115

Query: 118 NATLIMTAH 126
            A  + T H
Sbjct: 116 GAEAMATGH 124


>gi|157364458|ref|YP_001471225.1| NAD+ synthetase [Thermotoga lettingae TMO]
 gi|157315062|gb|ABV34161.1| NAD+ synthetase [Thermotoga lettingae TMO]
          Length = 281

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 10/93 (10%)

Query: 7  ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVDHCLRET 65
          E +  FV+   Y   + V +SGG DS  +      ++ +++ FG I           R++
Sbjct: 10 EFISNFVKEYSYKGAV-VGISGGLDSAVVAALCVRALGAEKVFGLILPE--------RDS 60

Query: 66 AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL 98
          +K+ V+    VC  L+I + +        + G+
Sbjct: 61 SKESVKDAKTVCENLKIHYEIKPATPMLRKLGI 93


>gi|162457292|ref|YP_001619659.1| putative NAD synthetase [Sorangium cellulosum 'So ce 56']
 gi|161167874|emb|CAN99179.1| Putative NAD synthetase [Sorangium cellulosum 'So ce 56']
          Length = 639

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 24/110 (21%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS-DRSFGKIKFSAISVDHCLRE--- 64
           V  + R +     I +A+SGG DS  LL  L +  +       ++ +A      LRE   
Sbjct: 339 VADYYRKIGAFKSIGLALSGGRDS--LLTLLVAWRAVQLIHPGLEGAA------LRERMR 390

Query: 65  ------------TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
                       ++    R  + +   L ++ +V+  +++ P+    A A
Sbjct: 391 ASLHAFFMPSRYSSDATHRAAAQIADDLGVSFAVIPIEDAFPRELEAAQA 440


>gi|58581818|ref|YP_200834.1| GMP synthase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426412|gb|AAW75449.1| glutamine amidotransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 537

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + D      K + + VD   LR +     +
Sbjct: 233 VREQVGDDDVILGLSGGVDSSVVAALLHKAIGD------KLTCVFVDTGLLRWQEGDQVM 286

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    V     +           A R+    L  E          NA  
Sbjct: 287 AM---FAEHMGVKVIRVNAADRYFAKLEGVSDPEAKRKIIGNLFVEIFDEESNTLANAKW 343

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 344 LAQGTIYPDVIES---AGSKTGNAHVIKSHHNVGGLPQHMKLGLVEPLRELFKDEVRRLG 400

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 401 VELGLP 406


>gi|116611777|gb|ABK04501.1| sulfate adenylyltransferase subunit 2 [Arthrobacter sp. FB24]
          Length = 304

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V     PA +    SGG DS+ +L            GK+ F  + VD  H 
Sbjct: 19  EAIHIIREVVAEFEKPALL---FSGGKDSVVMLHLATKAF---WPGKVPFPVLHVDTGHN 72

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
             E      R V     RL +   V S +       L   A
Sbjct: 73  FPEVIDFRDRTV----ERLGLKLVVGSVQEFIDSGELAERA 109


>gi|312864994|ref|ZP_07725222.1| protein ExsB [Streptococcus downei F0415]
 gi|311099105|gb|EFQ57321.1| protein ExsB [Streptococcus downei F0415]
          Length = 217

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  AL +             A++  +  R +   EV     +   L
Sbjct: 7  LVV-FSGGQDSTTCLFWALKNYN--------HVEAVTFAYGQRHS--HEVEVAKGIAKDL 55

Query: 81 RIAHSVVS 88
           I H V+ 
Sbjct: 56 EIEHQVLD 63


>gi|255021404|ref|ZP_05293452.1| GMP synthase (glutamine-hydrolyzing) [Acidithiobacillus caldus ATCC
           51756]
 gi|254969267|gb|EET26781.1| GMP synthase (glutamine-hydrolyzing) [Acidithiobacillus caldus ATCC
           51756]
          Length = 513

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 24/192 (12%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           ES    VR+ V    ++ A+SGG DS     A+ S+L  R+ G+ +   I VD+  LR  
Sbjct: 204 ESAIAAVRAQVGQGRVISALSGGVDS-----AVASILVHRAVGE-QLHCIFVDNGLLR-- 255

Query: 66  AKDEVRYVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTI------- 117
              EV  VS V  +   I   VV  +             E +  +I      +       
Sbjct: 256 -FGEVEQVSQVFRQYFHIPLHVVDARARFLDALAGVTDPERKRKIIGNLFIEVFDEEAKA 314

Query: 118 --NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              A  ++    + D +E+V  +      +    + G+ +     + L +  P     ++
Sbjct: 315 LGGADFLVQGTLYPDVIESVSFKGPSATIKSHHNVGGLPE----RMRLQLVEPLRELFKD 370

Query: 176 DIRSFLLQRNIS 187
           ++R    +  + 
Sbjct: 371 EVRELGRELGMP 382


>gi|228475297|ref|ZP_04060021.1| ExsB protein [Staphylococcus hominis SK119]
 gi|314936989|ref|ZP_07844336.1| ExsB protein [Staphylococcus hominis subsp. hominis C80]
 gi|228270673|gb|EEK12087.1| ExsB protein [Staphylococcus hominis SK119]
 gi|313655608|gb|EFS19353.1| ExsB protein [Staphylococcus hominis subsp. hominis C80]
          Length = 225

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     I+V  SGG DS   L  A       R F +++   ++ ++  R   + EV   S
Sbjct: 6  LNSEKAIVV-FSGGQDSTTCLFYA------KRHFKEVEL--VTFNYGQRHNTEIEVA--S 54

Query: 75 DVCSRLRIAHSVVS 88
           +     + H ++ 
Sbjct: 55 KIAKDQGLKHHILD 68


>gi|121608224|ref|YP_996031.1| GMP synthase [Verminephrobacter eiseniae EF01-2]
 gi|121552864|gb|ABM57013.1| GMP synthase (glutamine-hydrolyzing) [Verminephrobacter eiseniae
           EF01-2]
          Length = 539

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
               I      +R  V    +++ +SGG DS      +   +        + + + VDH 
Sbjct: 210 MRDHIAEALVQIRQQVGVEQVILGLSGGVDSSVAAALIQRAI------GAQLTCVFVDHG 263

Query: 62  L 62
           L
Sbjct: 264 L 264


>gi|21229402|ref|NP_635324.1| hypothetical protein MM_3300 [Methanosarcina mazei Go1]
 gi|20907994|gb|AAM32996.1| Phosphoadenosine phosphosulfate reductase [Methanosarcina mazei
           Go1]
          Length = 738

 Score = 41.0 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 8/83 (9%)

Query: 4   SPIESVRFFV-RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + I ++R  V R+      + V+ SGG DS+ +L    + L  R F     +       +
Sbjct: 312 NAINTIRGIVSRNEYRDLPVYVSFSGGKDSLVVLDLAKAALKQREFKAFFLNT-----GI 366

Query: 63  RETAKDEVRYVSDVCSRLRIAHS 85
                + V +    C  +++   
Sbjct: 367 --EFPETVDFARTFCREMKVQLE 387


>gi|289522228|ref|ZP_06439082.1| GMP synthase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504064|gb|EFD25228.1| GMP synthase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 514

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 35/197 (17%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRET 65
           E V+  +   V    ++ A+SGG DS        +VL+ R+ G  +   + V+   LR  
Sbjct: 206 EQVKQ-ISQTVGDGKVISALSGGVDSTV-----AAVLTQRAVGN-RLYCVFVNTGLLR-- 256

Query: 66  AKDEVRYVSDVCS---RLRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHAK 115
             DE   V  V     +L + +   S +        + P+    A  R        E  K
Sbjct: 257 -LDEAENVLSVYRNELKLNVRYVDASEEFLKALKGVTDPEEKRKAVGRTFIEVFEREAEK 315

Query: 116 TINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMC-----DTILYDLNLWISRPFL 170
             +A  ++    + D +E            +G G S +        +  ++ L +  P  
Sbjct: 316 VGDAKWLLQGTLYPDVIE---------SGRQGKGASVIKTHHNVGGLPEEMKLKLIEPLK 366

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R+      I 
Sbjct: 367 DLFKDEVRAIGSILGIP 383


>gi|255322449|ref|ZP_05363594.1| GMP synthase [Campylobacter showae RM3277]
 gi|255300357|gb|EET79629.1| GMP synthase [Campylobacter showae RM3277]
          Length = 510

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 69/189 (36%), Gaps = 31/189 (16%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    +L AVSGG DS      L + +            + VD+  LR   +++V 
Sbjct: 208 IKETVGNKKVLCAVSGGVDSSVTAALLAAAIPQ------NLILVFVDNGLLRTGEREQVE 261

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA-----REARY-------ALISEHAKTINA 119
                 ++L +    +       +T L   A      + R         +  + AK  + 
Sbjct: 262 --VTFRTKLGVELVSI----DASKTFLERLAGVTDPEKKRKIIGETFIEIFEKEAKKHDN 315

Query: 120 TLIMTAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
              +   T   D +E+  + S +   +    + G+ D + ++    +  P     ++++R
Sbjct: 316 VKFLAQGTLYTDIIESSVVGSSK-TIKSHHNVGGLPDWMSFE----LIEPLREIFKDEVR 370

Query: 179 SFLLQRNIS 187
              L+  +S
Sbjct: 371 QLGLELGLS 379


>gi|223041130|ref|ZP_03611385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter rectus RM3267]
 gi|222877624|gb|EEF12750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Campylobacter rectus RM3267]
          Length = 338

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 30/187 (16%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            IL+A+SGG DS      L     +     +K       H      +  +  V+  C  L
Sbjct: 2   KILMAMSGGVDSTMGAKMLLEAGYEVVGCYMKL------HKKPGYHEQNIGKVARACEYL 55

Query: 81  RIAHSVVSWKN---------------SKPQTGLMAAA-REARYALISEHAKTINATLIMT 124
            I + V+  ++                       A   R  ++  + + AK+I    + T
Sbjct: 56  GINYHVIDLQDEFDRYVYTPFVGAYKEGRTPNPCALCNRFIKFGELLKFAKSIGCEKLAT 115

Query: 125 AHTFDDQLETVYMRSQRD-YAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H    +++   +R   D   ++   ++ +   I+ D+      P     ++DI+     
Sbjct: 116 GHYI--RVQDGLIRVAADPSKDQSYFVAQVPKEIIADM----IFPLGDKFKKDIKELAKS 169

Query: 184 RNISWCE 190
              S+ E
Sbjct: 170 L-PSFRE 175


>gi|209519253|ref|ZP_03268055.1| Sulfate adenylyltransferase [Burkholderia sp. H160]
 gi|209500333|gb|EEA00387.1| Sulfate adenylyltransferase [Burkholderia sp. H160]
          Length = 320

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 26  VSGGSDS-MGLLIALHSV-LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS + L +AL +  L      K+ F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLALALKAFGLGANRKTKLPFPLVHIDTGHNYDEVIDFRDRRAQEIGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K    +      +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVRLRRETDSRNAAQAVTLLETIEQYGYTAMIGGARRD 156


>gi|21231622|ref|NP_637539.1| GMP synthase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768256|ref|YP_243018.1| GMP synthase [Xanthomonas campestris pv. campestris str. 8004]
 gi|188991393|ref|YP_001903403.1| GMP synthase [Xanthomonas campestris pv. campestris str. B100]
 gi|24211745|sp|Q8P8Q6|GUAA_XANCP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|81305769|sp|Q4UVC5|GUAA_XANC8 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|226739766|sp|B0RSB6|GUAA_XANCB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21113314|gb|AAM41463.1| glutamine amidotransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573588|gb|AAY48998.1| glutamine amidotransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167733153|emb|CAP51351.1| GMP synthase (glutamine-hydrolysing) [Xanthomonas campestris pv.
           campestris]
          Length = 521

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VREQVGDDEVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    V     +           A R+    L  +          NA  
Sbjct: 271 AM---FAEHMGVKVIRVNAADRYFAKLEGVSDPEAKRKIIGNLFVDIFDEESNKLANAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRRLG 384

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 385 VELGLP 390


>gi|116623070|ref|YP_825226.1| ExsB family protein [Candidatus Solibacter usitatus Ellin6076]
 gi|116226232|gb|ABJ84941.1| ExsB family protein [Candidatus Solibacter usitatus Ellin6076]
          Length = 281

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 14/130 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E  R     L     +LVA SGG+DS  L  A   VL + +      SA      L E+ 
Sbjct: 15  EKERKLFADLKAMERVLVAFSGGTDSAYLAWAARQVLGENAVAMTADSA-----SLPESH 69

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINAT 120
           K +     D   R  I H  +           +         ++  +  ++E  +     
Sbjct: 70  KRDAE---DFVRRFGIVHEYIETHEFDNPEYVRNDPNRCFHCKDELFTRLAEVGQARGYR 126

Query: 121 LIMTAHTFDD 130
            I+     DD
Sbjct: 127 HIVYGVNVDD 136


>gi|332968838|gb|EGK07885.1| transcription regulator ExsB [Kingella kingae ATCC 23330]
          Length = 226

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +     +LV  SGG DS   L     + +   +GK    A++  +  R     E++  ++
Sbjct: 1  MTQNKRVLVIFSGGQDSTTCL-----IQAIAQYGKDHVQAMTFAYGQRH--AIELQRATE 53

Query: 76 VCSRLRIAHSVVS 88
          +   L IA +V+ 
Sbjct: 54 IAQELGIAQTVLD 66


>gi|309811517|ref|ZP_07705299.1| sulfate adenylyltransferase, small subunit [Dermacoccus sp.
           Ellin185]
 gi|308434568|gb|EFP58418.1| sulfate adenylyltransferase, small subunit [Dermacoccus sp.
           Ellin185]
          Length = 312

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             IE +R  +     PA +    SGG DS  LL      L+      +  + + VD  H 
Sbjct: 27  EAIEIIREVIAEFERPALL---FSGGKDSAVLLHVALKALAP---APLPLTLLHVDTGHN 80

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA 101
           L     + + +  +V +R  +   V + ++      L   
Sbjct: 81  L----PEVIAFRDEVVARHGLRLHVAAVEDWIADGRLQER 116


>gi|255030613|ref|ZP_05302564.1| argininosuccinate synthase [Listeria monocytogenes LO28]
          Length = 360

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 45/193 (23%)

Query: 18  YPAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRE-- 64
               I++A SGG D S+           ++     V   ++   IK  AI+V     E  
Sbjct: 4   AKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAITV--GASESY 61

Query: 65  --TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
              AK+E  +  D      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 62  TIDAKEE--FAEDFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 115

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 116 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 157

Query: 179 SFLLQRNISWCED 191
           ++  + +I    D
Sbjct: 158 NYAKEHDIPVPID 170


>gi|149175149|ref|ZP_01853772.1| ExsB [Planctomyces maris DSM 8797]
 gi|148846127|gb|EDL60467.1| ExsB [Planctomyces maris DSM 8797]
          Length = 233

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 19 PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
          P  +++ VSGG DS   L               +  A+S D+  R   + E+     VC 
Sbjct: 6  PKAVVL-VSGGLDSATTLAIAAD-------AGFELYALSFDYGQRH--RHELEAAKKVCQ 55

Query: 79 RLRIAHSVV 87
             +   V+
Sbjct: 56 AFDVKKFVI 64


>gi|56130660|ref|YP_145563.1| hypothetical protein pMOL30_033 [Ralstonia metallidurans CH34]
 gi|94152416|ref|YP_581823.1| 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS
          reductase)/FAD synthetase [Cupriavidus metallidurans
          CH34]
 gi|56068651|emb|CAI11215.1| hypothetical protein [Cupriavidus metallidurans CH34]
 gi|93358786|gb|ABF12873.1| 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS
          reductase)/FAD synthetase [Cupriavidus metallidurans
          CH34]
          Length = 597

 Score = 41.0 bits (95), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 4  SPIESVRFFVRSLVYPAH-ILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAIS 57
            IE     + +L    H I+VA SGG D S+   + LH+ +  ++ G      ++
Sbjct: 21 ELIEKALAAIGALFAGGHPIIVAYSGGKDSSVVAALVLHAAVLAKASGGNPLVIVT 76


>gi|332702539|ref|ZP_08422627.1| hypothetical protein Desaf_1394 [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552688|gb|EGJ49732.1| hypothetical protein Desaf_1394 [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 376

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             +   R  VR       +L+A SGG DS   +  L  V        ++  A+SVD+   
Sbjct: 80  EFLAMARGRVRGRDMGHDVLLAYSGGKDSTYTVHLLSQVF------GLRVLALSVDNGFM 133

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS 88
              A D +R V     RL + H +V 
Sbjct: 134 SPGAMDNMRRV---LDRLGVDHMLVR 156


>gi|256425508|ref|YP_003126161.1| argininosuccinate synthase [Chitinophaga pinensis DSM 2588]
 gi|256040416|gb|ACU63960.1| argininosuccinate synthase [Chitinophaga pinensis DSM 2588]
          Length = 399

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 52/192 (27%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +++  SGG D S      +  +  D+ +   +  ++ V+      + +E++ +     
Sbjct: 2   KKVVLGFSGGLDTS----YCVKYLTDDKGY---EVHSVIVNTG--GFSAEELQEIERRAY 52

Query: 79  RLRIA-HSVVSWKNSKPQTGLM-----------------AAAREARYALISEHAKTINAT 120
            L +  H  V    S   + +                  +A R  +   I+EH K + A 
Sbjct: 53  SLGVKSHKTVDAIRSYYDSAIKYLVFGNVLKNNTYPLSVSAERVTQALAIAEHVKAVGAD 112

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRRE 175
               AH                    G G   +   +++ +    + I  P   L+  RE
Sbjct: 113 --AVAH-----------------GSTGAGNDQVRFDMIFHIMIPGVEIITPIRDLKLSRE 153

Query: 176 DIRSFLLQRNIS 187
           +   +L  + + 
Sbjct: 154 EEIEYLKAKGVE 165


>gi|70606119|ref|YP_254989.1| hypothetical protein Saci_0280 [Sulfolobus acidocaldarius DSM 639]
 gi|110816268|sp|Q4JBY3|QUEC_SULAC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=Archaeosine biosynthesis protein queC; AltName:
           Full=PreQ(0) synthase
 gi|68566767|gb|AAY79696.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 462

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E  +  +        ILV  SGG DS      L            + + +  ++
Sbjct: 221 MVDDKLEIRKVPLLKEKNKKRILVVASGGLDSTVAATYLVR-------QGHEVTLLHFNY 273

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90
              +  + E   V  +   L +    +   
Sbjct: 274 H-HKAEEKEREAVRKISEYLNVPFVEIDTD 302


>gi|134298155|ref|YP_001111651.1| argininosuccinate synthase [Desulfotomaculum reducens MI-1]
 gi|172044248|sp|A4J173|ASSY_DESRM RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|134050855|gb|ABO48826.1| argininosuccinate synthase [Desulfotomaculum reducens MI-1]
          Length = 401

 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 58/186 (31%), Gaps = 43/186 (23%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCS 78
            +++A SGG D S+        +   +     +  A++ D    E  A  E + +    S
Sbjct: 3   KVVLAYSGGLDTSV-------IIAWLKENYGYEVIAVTADLGQGEELAPLEEKALQSGAS 55

Query: 79  RLRIA----HSVVSWKNSKPQTGLMAA---------AREARYALISEHAKTINATLIMTA 125
           ++ I       V  +     + G +           AR      + E A+   A  +  A
Sbjct: 56  KIYIEDLRKEFVEDYIWPTLKAGAIYEGKYLLGTSFARPLIAKKLVEIAEKEGA--VAVA 113

Query: 126 HTF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           H      +DQ+     R +         L  +     +D+            RED   + 
Sbjct: 114 HGATGKGNDQV-----RFELGVKALAPHLKVIAPWREWDIR----------SREDAIDYA 158

Query: 182 LQRNIS 187
             R I 
Sbjct: 159 EARGIP 164


>gi|315453397|ref|YP_004073667.1| NH(3)-dependent NAD(+) synthetase [Helicobacter felis ATCC 49179]
 gi|315132449|emb|CBY83077.1| NH(3)-dependent NAD(+) synthetase [Helicobacter felis ATCC 49179]
          Length = 248

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 61/199 (30%), Gaps = 53/199 (26%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFS--AISV 58
           +FL    + R F R        +V +SGG DS     AL  VL  R          AI  
Sbjct: 10  LFLQTQSAQRGFKR-------FVVGMSGGVDS-----ALVGVLCQRVLPTHALLMPAIH- 56

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVS-------WKNSKPQTGLMAA---AREARYA 108
                 ++  E   +  +C R  I ++          +K   P   L          R  
Sbjct: 57  -----PSSATEDAIL--LCERFSIPYTQRPIAPYEALFKEQNPHVSLGRLGNFCARMRMN 109

Query: 109 LISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
           L+ + +  I A ++ T              S +     G G        L+    W+  P
Sbjct: 110 LLYDFSMEIGALVVGT--------------SNKSEIMLGYG-------TLFGDLAWLINP 148

Query: 169 FLRCRREDIRSFLLQRNIS 187
                +  + S   + +I 
Sbjct: 149 IAHLFKSQVYSLAQELDIP 167


>gi|256845877|ref|ZP_05551335.1| GMP synthase domain-containing protein [Fusobacterium sp. 3_1_36A2]
 gi|256719436|gb|EEU32991.1| GMP synthase domain-containing protein [Fusobacterium sp. 3_1_36A2]
          Length = 509

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 25/198 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IESTVKQIKERVGNKQVILGLSGGVDSSVAAALINKAIGK------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +V ++   + I       +        + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFDMNIKCINAEERFLSKLAGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D +E+V ++      +    + G+ + + ++    +  P     +
Sbjct: 313 KIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFE----LLEPLRELFK 368

Query: 175 EDIRSFLLQRNIS-WCED 191
           +++R    +  I  +  D
Sbjct: 369 DEVRKVGRELGIPDYMVD 386


>gi|238920862|ref|YP_002934377.1| Phosphoadenosine phosphosulfate reductase family protein
          [Edwardsiella ictaluri 93-146]
 gi|238870431|gb|ACR70142.1| Phosphoadenosine phosphosulfate reductase family protein
          [Edwardsiella ictaluri 93-146]
          Length = 403

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           + V+ SGG DS  LL     V   +     +   + VD
Sbjct: 27 RVCVSFSGGKDSTVLLHIAAEVARRKKR---RIFVLFVD 62


>gi|213964680|ref|ZP_03392880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium amycolatum SK46]
 gi|213952873|gb|EEB64255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium amycolatum SK46]
          Length = 379

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 57/197 (28%), Gaps = 47/197 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RETAK-----D 68
            +L A+SGG DS           +       +   + +   L       R  ++     +
Sbjct: 2   RVLAAMSGGVDSSV-------AAARALAAGHEVVGVHLA--LSKDPQSVRAGSRGCCSLE 52

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREA-RYALISE 112
           +      VC  L I   V  +     +                       E  ++A + E
Sbjct: 53  DSGDARRVCDELGIPFYVWDFSERFKEEVMDDFYDSYERGETPNPCLRCNERIKFAALLE 112

Query: 113 HAKTINATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
               +    ++T H     DD      +R  RD  +    + G+ D      +L+   P 
Sbjct: 113 RGLALGFDAVVTGHYALLGDD----GLLRRGRDMKKDQSYVLGVLDREQLSHSLF---PV 165

Query: 170 LRCRREDIRSFLLQRNI 186
               + +IR       +
Sbjct: 166 GDTEKPEIREEARDMGL 182


>gi|224540146|ref|ZP_03680685.1| hypothetical protein BACCELL_05059 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518236|gb|EEF87341.1| hypothetical protein BACCELL_05059 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 432

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E +R   ++     +I ++ SGG DS  LL      +   +  + K     +D+ ++   
Sbjct: 15  ERLRVIFQNF---DNIYISFSGGKDSGVLLNLCIDYIRKHNLKR-KIGVFHMDYEIQYNM 70

Query: 67  KDEVRYVSDVCSR----LRIAHSVVSWKNSKPQTGLMAAAR 103
             +  YV          L I H  V ++ +   +      R
Sbjct: 71  TID--YVERTFKENQDILDIYHICVPFRVTTCTSMYEDYWR 109


>gi|218709345|ref|YP_002416966.1| putative ATPase [Vibrio splendidus LGP32]
 gi|218322364|emb|CAV18511.1| predicted ATPase [Vibrio splendidus LGP32]
          Length = 197

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   + E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEYD--------EVHAITFDYGQRH--RLEIEVAESLSKEL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|157736934|ref|YP_001489617.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
 gi|157698788|gb|ABV66948.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
          Length = 375

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 34/123 (27%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ +SGG DS  L   +  +        ++   + +D      ++  V+ + +V + L +
Sbjct: 74  ILGLSGGVDSTYLAYLVVEL-------GLRPLVVHIDTGW--NSEIAVQNIENVVNILNL 124

Query: 83  AH--SVVSWKNSK----------------PQTGLMAAAREARYALISEHAKTINATLIMT 124
                V+ W+  K                PQ  +  A       L+++ AK      I++
Sbjct: 125 DLHTHVIDWEEMKDLQLAFFKASVPDCDIPQDHVFPA-------LLNKIAKENKIKHIVS 177

Query: 125 AHT 127
            H 
Sbjct: 178 GHN 180


>gi|158300718|ref|XP_320574.3| AGAP011960-PA [Anopheles gambiae str. PEST]
 gi|157013296|gb|EAA00244.3| AGAP011960-PA [Anopheles gambiae str. PEST]
          Length = 377

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 34/132 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRS---FGKIKFSAISVDHCLRETA-----KDEVR 71
             ++V +SGG DS      L     +                     + +     + +  
Sbjct: 3   RRVVVGISGGVDSAVSAYLLKKRGFEVCGAFMKNWDLI---------DESGYCSGEQDFE 53

Query: 72  YVSDVCSRLRIAHSVVSWKN-----------SKPQTGLMAAA-----REARYALISEHAK 115
               +C  L I    +++                + G+         R  ++     HA+
Sbjct: 54  DAQRLCRTLNIPLEEINFVKDYWVEVFGNFLKDYEAGITPNPDILCNRHIKFNRFFHHAR 113

Query: 116 T-INATLIMTAH 126
             + A  I T H
Sbjct: 114 ERLGADAIATGH 125


>gi|19704776|ref|NP_604338.1| GMP synthase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24211750|sp|Q8RDR4|GUAA_FUSNN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|19715106|gb|AAL95637.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 512

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 25/198 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IESTVKQIKERVGNKQVILGLSGGVDSSVAAALINKAIGR------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +V ++   + I       +        + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFDMNIKCINAEERFLTKLAGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D +E+V ++      +    + G+ + + ++    +  P     +
Sbjct: 313 KIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFE----LLEPLRELFK 368

Query: 175 EDIRSFLLQRNIS-WCED 191
           +++R    +  I  +  D
Sbjct: 369 DEVRKVGRELGIPDYMVD 386


>gi|15827120|ref|NP_301383.1| GMP synthase [Mycobacterium leprae TN]
 gi|221229598|ref|YP_002503014.1| GMP synthase [Mycobacterium leprae Br4923]
 gi|13638206|sp|P46810|GUAA_MYCLE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|254800107|sp|B8ZUE2|GUAA_MYCLB RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|13092668|emb|CAC29903.1| putative GMP synthase [Mycobacterium leprae]
 gi|219932705|emb|CAR70488.1| putative GMP synthase [Mycobacterium leprae Br4923]
          Length = 529

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 26/190 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +   H +  +SGG DS     A+ + L  R+ G  + + I VDH  LR+  + +V+
Sbjct: 219 VRAQIGNGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCIFVDHGLLRDGERGQVQ 272

Query: 72  --YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTI------- 117
             +V+   ++L  +  +    +     T          R+   A        +       
Sbjct: 273 RDFVAATGAKLVTVDAAETFLQALSGVTNPEGKRKIIGRQFIRAFEGAVRDLLGDSTFDS 332

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               ++    + D +E+             +        +  +L   +  P     ++++
Sbjct: 333 GIEFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDNLRFKLVEPLRLLFKDEV 387

Query: 178 RSFLLQRNIS 187
           R+   Q ++ 
Sbjct: 388 RAVGRQLDLP 397


>gi|84387076|ref|ZP_00990099.1| predicted ATPase [Vibrio splendidus 12B01]
 gi|84378151|gb|EAP95011.1| predicted ATPase [Vibrio splendidus 12B01]
          Length = 231

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   + E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEYD--------EVHAITFDYGQRH--RLEIEVAESLSKEL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|208435231|ref|YP_002266897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori G27]
 gi|229486341|sp|B5Z8Y2|MNMA_HELPG RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|208433160|gb|ACI28031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori G27]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGVYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++     T      +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSTVYDEFISAYEEGQTPNPCTLCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|120436574|ref|YP_862260.1| GMP synthase [Gramella forsetii KT0803]
 gi|226739625|sp|A0M3J8|GUAA_GRAFK RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|117578724|emb|CAL67193.1| GMP synthase [Gramella forsetii KT0803]
          Length = 509

 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++  V    +++ +SGG DS    + LH  +            I V++ L
Sbjct: 207 LKEKVGDDKVVLGLSGGVDSTVAAVLLHKAIGK------NLYCIFVNNGL 250


>gi|328949749|ref|YP_004367084.1| NH(3)-dependent NAD(+) synthetase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450073|gb|AEB10974.1| NH(3)-dependent NAD(+) synthetase [Marinithermus hydrothermalis DSM
           14884]
          Length = 282

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +VAVSGG DS   L       + R+ G     A+++ H  R++  + + +   V     +
Sbjct: 41  VVAVSGGVDSATTLAL-----AVRALGPENVHALALPH--RDSRPESLEHARLVAQTFGV 93

Query: 83  AHSVVSW 89
           A  VV  
Sbjct: 94  ALEVVDI 100


>gi|170028584|ref|XP_001842175.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167876297|gb|EDS39680.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 1322

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRL 80
           IL+ VSGG DS      L + L        +  A+ +D+   R+    E   V      L
Sbjct: 872 ILL-VSGGVDSTVCAALLRNALK-----PEQVIAVHIDNGFMRKN---ESAAVEKSLREL 922

Query: 81  RIAHSV 86
            +   V
Sbjct: 923 GVDLLV 928


>gi|225426434|ref|XP_002274590.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 534

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E ++     +    H++ A+SGG DS      +H  + DR         + VD+ L
Sbjct: 215 EEIKLIKGMVAPDDHVICALSGGVDSTVAATLVHKAIGDR------LHCVFVDNGL 264


>gi|310778144|ref|YP_003966477.1| argininosuccinate synthase [Ilyobacter polytropus DSM 2926]
 gi|309747467|gb|ADO82129.1| argininosuccinate synthase [Ilyobacter polytropus DSM 2926]
          Length = 398

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 29/179 (16%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S+        +   +    +   A+ VD        D++  V      
Sbjct: 3   KVVLAYSGGLDTSI-------IIPWLKENYSLDVIAVCVDVGQ----DDDMEEVKKKAIA 51

Query: 80  LRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTINATLIM-TAHTFDDQ 131
              A  V      +        +     A  E RY L +  A+ + A  ++  AH     
Sbjct: 52  SG-AAKVFVVDAKEEFLTEYAFKALKAGAMYENRYLLGTSFARPLMAKKLVEIAHQEG-- 108

Query: 132 LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC---RREDIRSFLLQRNIS 187
             T               +        +D  + I  P+       RED   +   + I 
Sbjct: 109 -ATYICHGCTGKGND--QVRFEVGVAAFDPMMKIIAPWREWDIESREDAIDYAEAKGIK 164


>gi|323343215|ref|ZP_08083446.1| hypothetical protein HMPREF0357_11627 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463279|gb|EFY08474.1| hypothetical protein HMPREF0357_11627 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 584

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 1   MFLSPIESVRFF-VRSLVYPAHILVAVSGGSD---SMGLLIALHSVLSDRSFG 49
           M+ + I ++R+F   +L Y    +V VSGG D   S+ LL+   ++  DR  G
Sbjct: 265 MYHALISAIRYFDEEALSYGPKWIVGVSGGLDSSVSIALLV--KALGKDRVVG 315


>gi|224084082|ref|XP_002188342.1| PREDICTED: similar to FAD synthetase [Taeniopygia guttata]
          Length = 496

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 35/173 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVDHCLRETA--KDEVRYVSDVC 77
            + V  +GG D   LL  +H+ +  R    + +   + +    R  +   +  +++    
Sbjct: 307 QLCVGFNGGKDCTALLHLVHAAVQRRFPARQERLQVLYI----RIVSPFPEMEQFIQTTV 362

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETVYM 137
            R  +    V             + REA    +++  +               QLE V M
Sbjct: 363 QRYGVQLCTV-----------EGSIREA----LAQLKEQQP------------QLEAVLM 395

Query: 138 RSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
              R        L+ MC T           P L     DI  FL +  + +C 
Sbjct: 396 G-TRRTDPYSRTLTPMCVTDPSWPPYMRVNPLLDWSYRDIWEFLRKLFVPYCI 447


>gi|188576626|ref|YP_001913555.1| GMP synthase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|226739767|sp|B2SLG1|GUAA_XANOP RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|188521078|gb|ACD59023.1| GMP synthase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VREQVGDDDVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    V     +           A R+    L  E          NA  
Sbjct: 271 AM---FAEHMGVKVIRVNAADRYFAKLEGVSDPEAKRKIIGNLFVEIFDEESNTLANAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPQHMKLGLVEPLRELFKDEVRRLG 384

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 385 VELGLP 390


>gi|160940314|ref|ZP_02087659.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436894|gb|EDP14661.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC
           BAA-613]
          Length = 351

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 52/196 (26%), Gaps = 50/196 (25%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY-------------V 73
           SGG DS      L     D          I V   + +    EV+               
Sbjct: 2   SGGVDSSVAAWLLKEQGYD---------VIGVTMQIWQDEDTEVQEAEGGCCGLSAVDDA 52

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAA-REARYALISEHAKTI 117
             V   L I + V+++K    +                    A  R  ++  +   +  I
Sbjct: 53  RRVAMDLGIPYYVMNFKEEFRKNVMDYFVGEYVEGRTPNPCIACNRHVKWESLLRRSMAI 112

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLR 171
            A  I T H    Q++    R           ++   D      NL          P   
Sbjct: 113 GADYIATGHYA--QID----RLPGGRYSLKTSVTAAKDQTYALYNLTQEQLSHTLMPVGS 166

Query: 172 CRREDIRSFLLQRNIS 187
             +E+IR    +  + 
Sbjct: 167 YHKEEIRDMAKRLGLP 182


>gi|33240814|ref|NP_875756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|81664194|sp|Q7VAT9|MNMA_PROMA RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|33238343|gb|AAQ00409.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
           methyltransferase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 406

 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF-----SAIS---V 58
           E V   ++ +     I V +SGG DS      L     +     +       S  +   V
Sbjct: 24  EEVLKKLKGVEGDHSIAVGLSGGVDSSLTAALLVEAGWNVEGITLWLMSGKGSCCTDGLV 83

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMA 100
           D              + +C +L I H V+  + +  +  + +
Sbjct: 84  D-------------AAGICEQLGIPHHVIDARETFQREIIES 112


>gi|225551719|ref|ZP_03772662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia sp. SV1]
 gi|225371514|gb|EEH00941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia sp. SV1]
          Length = 355

 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 65/197 (32%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   ++   S+     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWV--------EDELSYIGNCPWQEDL 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------------KPQTGLMAAAREARYALISEH 113
            YV  +C++  + + +++++                    P   +    R    A   + 
Sbjct: 54  NYVEAICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKI 113

Query: 114 AKTINATLIMTAHTFDDQL-ET-VYMRSQRDYAE-KGMGLSGMCDTILYDLNLWISRPFL 170
                  L++T H    Q  E+   ++  +D  + +   LS +    L      +  P  
Sbjct: 114 --NNQYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQLSK----LYFPLG 167

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R      N+ 
Sbjct: 168 TLLKSEVRQIAKSINLP 184


>gi|193214830|ref|YP_001996029.1| GMP synthase [Chloroherpeton thalassium ATCC 35110]
 gi|226738419|sp|B3QYF4|GUAA_CHLT3 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|193088307|gb|ACF13582.1| GMP synthase, large subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 514

 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I+S    ++ LV     + A+SGG DS    + +   L D+         I VD+  L
Sbjct: 206 SFIDSEIARIKELVGDQTAICAISGGVDSSVAAVLVSRALGDK------LHCIFVDNGLL 259

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS 88
           R+    E   V +   +L +  + V 
Sbjct: 260 RKN---EAEKVQEKLKQLGLNLTTVD 282


>gi|121534534|ref|ZP_01666356.1| ExsB family protein [Thermosinus carboxydivorans Nor1]
 gi|121306786|gb|EAX47706.1| ExsB family protein [Thermosinus carboxydivorans Nor1]
          Length = 277

 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 59/180 (32%), Gaps = 36/180 (20%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD-EVRYVSDVCSRLR 81
           ++  SGG+DS  L  A + VL +R+   +   + ++       ++  E         ++ 
Sbjct: 22  VIGFSGGTDSAFLAAAAYRVLGERAVA-VTCYSATL-----PESERMEAAI---TARQIG 72

Query: 82  IAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           I H ++           +         ++ R++ ++  A       ++     DD     
Sbjct: 73  IRHVLLPQNELDSDDFVRNDADRCYHCKKGRFSALAAWAAAHGYHWVLEGANADD----- 127

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--RREDIRSFLLQRNISWCEDPS 193
                    +   GL  + +  +      +  P L     + +IR    Q  +     PS
Sbjct: 128 -------VGDYRPGLRALSELAV------VRSPLLEVGLTKAEIRELSRQWGLPTWNKPS 174


>gi|302685329|ref|XP_003032345.1| hypothetical protein SCHCODRAFT_76806 [Schizophyllum commune H4-8]
 gi|300106038|gb|EFI97442.1| hypothetical protein SCHCODRAFT_76806 [Schizophyllum commune H4-8]
          Length = 538

 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 12/82 (14%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +RS+  P   ++ AVSGG DS      +H  + DR      F AI VD+  LR     E 
Sbjct: 219 IRSICGPKGRVIGAVSGGVDSTVAAKLMHEAIGDR------FHAIMVDNGVLRLN---EG 269

Query: 71  RYVSDVCSR-LRIAHSVVSWKN 91
           + V ++ +R L +   VV   +
Sbjct: 270 KQVHEMLNRDLGVNLKVVDASD 291


>gi|317047182|ref|YP_004114830.1| exsB protein [Pantoea sp. At-9b]
 gi|316948799|gb|ADU68274.1| exsB protein [Pantoea sp. At-9b]
          Length = 231

 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R   ++E+   +++  +L
Sbjct: 5  VVV-FSGGQDSTTCLIQALQQYD--------EVHCVTFDYGQRH--REEIEVAAELAQKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|145635278|ref|ZP_01790981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittAA]
 gi|205822421|sp|Q4QP16|MNMA_HAEI8 RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|145267422|gb|EDK07423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittAA]
          Length = 383

 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 25  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 74

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 75  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 134

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 135 AEDLGADYIATGH 147


>gi|83814385|ref|YP_446181.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Salinibacter ruber DSM 13855]
 gi|294508107|ref|YP_003572165.1| GMP synthase [glutamine-hydrolyzing] [Salinibacter ruber M8]
 gi|123528343|sp|Q2S0V0|GUAA_SALRD RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|83755779|gb|ABC43892.1| glutamine-hydrolyzing GMP synthase [Salinibacter ruber DSM 13855]
 gi|294344435|emb|CBH25213.1| GMP synthase [glutamine-hydrolyzing] [Salinibacter ruber M8]
          Length = 526

 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +E     +R  V   H+++ +SGG DS      L   L D      +   I V++ L
Sbjct: 209 SFVEEQTETIRDRVGDRHVILGLSGGVDSSVAAALLQRALGD------QLHCIFVNNGL 261


>gi|68248779|ref|YP_247891.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae
           86-028NP]
 gi|68056978|gb|AAX87231.1| probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 86-028NP]
          Length = 397

 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 39  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 88

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 89  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 148

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 149 AEDLGADYIATGH 161


>gi|86143063|ref|ZP_01061485.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85830508|gb|EAQ48967.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 515

 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +ES    +++ V    +++ +SGG DS    + LH  +            I V++  L
Sbjct: 203 SFVESTVDELKNKVGTDKVILGLSGGVDSSVAAMLLHKAIGK------NLHCIFVNNGLL 256

Query: 63  RETAKDEV 70
           R+   ++V
Sbjct: 257 RKNEFEDV 264


>gi|319775956|ref|YP_004138444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3047]
 gi|317450547|emb|CBY86764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3047]
          Length = 418

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 60  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 109

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 110 ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 169

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 170 AEDLGADYIATGH 182


>gi|319898139|ref|YP_004136336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3031]
 gi|317433645|emb|CBY82030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae F3031]
          Length = 383

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 25  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 74

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 75  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 134

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 135 AEDLGADYIATGH 147


>gi|315638963|ref|ZP_07894134.1| GMP synthase [Campylobacter upsaliensis JV21]
 gi|315480992|gb|EFU71625.1| GMP synthase [Campylobacter upsaliensis JV21]
          Length = 517

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 64/184 (34%), Gaps = 29/184 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVC 77
              +L AVSGG DS  +   L+  + +          + VD   LR+  ++ V   +   
Sbjct: 217 GGKVLCAVSGGVDSSVVATLLYRAIGE------NLIPVFVDTGLLRKGEREAVE--AMFR 268

Query: 78  SRLRIAHSVVSWKN---SKPQTGLMAAAREARY-------ALISEHAKTIN----ATLIM 123
             L++   V   K     + +        + R         +    AK  N       + 
Sbjct: 269 ENLKVPLIVADAKELFLGRLKGVTEPE--QKRKIIGETFIEVFEAEAKKHNTKGEIKFLA 326

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+V ++      +    + G+ + + ++    +  P     ++++R+   +
Sbjct: 327 QGTLYPDVIESVSVKGPSKTIKSHHNVGGLPEWMKFE----LIEPLRELFKDEVRALGRE 382

Query: 184 RNIS 187
             + 
Sbjct: 383 LGMP 386


>gi|304413362|ref|ZP_07394835.1| GMP synthase [Candidatus Regiella insecticola LSR1]
 gi|304284205|gb|EFL92598.1| GMP synthase [Candidatus Regiella insecticola LSR1]
          Length = 543

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 25/190 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  +    +++ +SGG DS    + L   + D+       + + VD+  LR     E  
Sbjct: 239 LREKIGEDEVILGLSGGVDSSVTALLLQKAIGDK------LTCVFVDNGLLRLN---EAT 289

Query: 72  YVSDVCSR---LRIAHSVVSWKNSKPQTGLM--AAAREARYALI-----SEHAKTINATL 121
            V  +      L+I H   + +      G+    A R+    +       E  K  NA  
Sbjct: 290 EVLKMFRDNLGLKIIHVEAADRFLNELAGVEEPEAKRKIIGRVFVEIFDEEAKKLSNAKW 349

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    +        +        +  D+ L +  P     ++++R   
Sbjct: 350 LAQGTIYPDVIES---AAAVTGKAHAIKSHHNVGGLPKDMKLGLVEPLKELFKDEVRRIG 406

Query: 182 LQRNISWCED 191
           L   +   ED
Sbjct: 407 LALGLP--ED 414


>gi|302870892|ref|YP_003839528.1| exsB protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302573751|gb|ADL41542.1| exsB protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 217

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS  LL        D      +  AIS  +  ++ +K E+ +    CS L + H 
Sbjct: 3  LSGGMDSTTLLY-------DVKNQGYEVFAISFLYG-QKHSK-ELEFAKKTCSLLLVPHK 53

Query: 86 VVSW 89
          +V  
Sbjct: 54 IVDI 57


>gi|296327752|ref|ZP_06870291.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296155099|gb|EFG95877.1| GMP synthase (glutamine-hydrolyzing) [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 512

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 74/198 (37%), Gaps = 25/198 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE+    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IETTVKQIKERVGNKQVILGLSGGVDSSVAAALINKAIGR------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +V ++   + I       +        + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFDMNIKCINAEERFLTKLAGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D +E+V ++      +    + G+ + + ++    +  P     +
Sbjct: 313 KIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFE----LLEPLRELFK 368

Query: 175 EDIRSFLLQRNIS-WCED 191
           +++R    +  I  +  D
Sbjct: 369 DEVRKVGRELGIPDYMVD 386


>gi|297742514|emb|CBI34663.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E ++     +    H++ A+SGG DS      +H  + DR         + VD+ L
Sbjct: 174 EEIKLIKGMVAPDDHVICALSGGVDSTVAATLVHKAIGDR------LHCVFVDNGL 223


>gi|291087862|ref|ZP_06347712.2| argininosuccinate synthase [Clostridium sp. M62/1]
 gi|291073707|gb|EFE11071.1| argininosuccinate synthase [Clostridium sp. M62/1]
          Length = 419

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 57/204 (27%), Gaps = 39/204 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------------HCLR 63
           +    +++A SGG D+         +   +     +     +D               L 
Sbjct: 10  IMKEKVILAYSGGLDTTA------IIPWLKEHFDYEVICCCIDCGQGEELTGLEERAKLS 63

Query: 64  ETAKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
             +K      V D C    +                 + AR      + E A+   A+ I
Sbjct: 64  GASKLYIEDIVDDFCDNYIVPCVQAGAVYENKYLLGTSMARPGIAKKLVEIARKEGASAI 123

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
               T   +DQ+     R +         L  +    + D+       +    R+D   +
Sbjct: 124 CHGATGKGNDQI-----RFELGIKALAPDLKIIAPWRMTDV-------WTMQSRQDEIDY 171

Query: 181 LLQRNISWCED-PSNTDDRFERVR 203
                I    D P + D  + R R
Sbjct: 172 CKAHGI----DLPFSADSSYSRDR 191


>gi|153870888|ref|ZP_02000191.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Beggiatoa sp. PS]
 gi|152072646|gb|EDN69809.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Beggiatoa sp. PS]
          Length = 533

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R+ V    +L+A+SGG DS  +   LH  +        +   + VD+ L
Sbjct: 221 IRAEVGDNKVLLALSGGVDSSVVAALLHRAIGK------QLICVFVDNGL 264


>gi|145641507|ref|ZP_01797085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae R3021]
 gi|145273798|gb|EDK13666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 22.4-21]
          Length = 362

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 4   KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 53

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 54  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 113

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 114 AEDLGADYIATGH 126


>gi|145637334|ref|ZP_01792994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittHH]
 gi|145269426|gb|EDK09369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittHH]
          Length = 383

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 25  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 74

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 75  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 134

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 135 AEDLGADYIATGH 147


>gi|15603201|ref|NP_246275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|14195272|sp|Q9CLA3|MNMA_PASMU RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|12721705|gb|AAK03420.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 383

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 36/135 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
               ++  +SGG DS      L           +K               D+  Y     
Sbjct: 22  RKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAA 71

Query: 74  -----SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALIS 111
                  VC +L I    +++                 A R          E ++ A + 
Sbjct: 72  DLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKAFLD 131

Query: 112 EHAKTINATLIMTAH 126
             A+ + A  I T H
Sbjct: 132 YAAEDLGADYIATGH 146


>gi|8039809|sp|P44551|MNMA_HAEIN RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 383

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 25  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 74

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 75  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 134

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 135 AEDLGADYIATGH 147


>gi|309972705|gb|ADO95906.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Haemophilus influenzae R2846]
          Length = 413

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 55  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 104

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 105 ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 164

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 165 AEDLGADYIATGH 177


>gi|268608557|ref|ZP_06142284.1| tRNA-specific 2-thiouridylase MnmA [Ruminococcus flavefaciens FD-1]
          Length = 358

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 63/252 (25%), Gaps = 73/252 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------- 72
             ++V +SGG DS    + L     D     +K           +   D+ +        
Sbjct: 2   KKVMVGMSGGVDSSVAAMLLREQGYDVMGVTLKL--------FSDEDIDQAQKEGKTCCA 53

Query: 73  ------VSDVCSRLRIAHSVVSWKNSKPQ---------------TGLMAAA-REARYALI 110
                    V  RL   H V ++K++  +                       R  ++  +
Sbjct: 54  LSDVEDARSVARRLGFEHLVFNFKDNFREHVMKQFSDSYLCGRTPNPCIECNRHVKFDKM 113

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR--- 167
              A  +    I T H                  E+G  L         D    +     
Sbjct: 114 LRRALELEYDYIATGH----------YAVCEYDEERGRWLLKRSADRSKDQTYVLYSLTQ 163

Query: 168 --------PFLRCRREDIRSFLLQRNISWCEDPSNT----------DDRFERVRVRRFVR 209
                   P     +  +R    +  +      SN           D  +    +RRF  
Sbjct: 164 EQLSHTLFPLGSLDKTQVRELAEKAGLV----NSNKPDSQDICFVPDGDYA-GFIRRFTG 218

Query: 210 DIDLHALYLKMK 221
               H  ++ M+
Sbjct: 219 TDVPHGNFVDME 230


>gi|186476983|ref|YP_001858453.1| sulfate adenylyltransferase subunit 2 [Burkholderia phymatum
           STM815]
 gi|184193442|gb|ACC71407.1| Sulfate adenylyltransferase [Burkholderia phymatum STM815]
          Length = 320

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 26  VSGGSDS-MGLLIALHSV-LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS + L +AL +  L      ++ F  + +D  H   E      R   ++ ++L 
Sbjct: 48  FSGGKDSVVVLALALKAFGLGANRKTQLPFPLVHIDTGHNYDEVIDFRDRRAQEIGAQLV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K    +      +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVRLRRETDSRNAAQAVTLLETIEQYGYTAMIGGARRD 156


>gi|329123820|ref|ZP_08252378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
 gi|327469307|gb|EGF14778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
          Length = 418

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 60  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 109

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 110 ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 169

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 170 AEDLGADYIATGH 182


>gi|325922091|ref|ZP_08183885.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas gardneri ATCC
           19865]
 gi|325547428|gb|EGD18488.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas gardneri ATCC
           19865]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR+ V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VRAQVGDDEVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    V     +           A R+    L  +          NA  
Sbjct: 271 AM---FAEHMGVKVIRVNAADRYFAKLEGVSDPEAKRKIIGNLFVDIFDEESNKLANAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRRLG 384

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 385 VELGLP 390


>gi|300788496|ref|YP_003768787.1| sulfate adenylyltransferase subunit 2 [Amycolatopsis mediterranei
           U32]
 gi|299798010|gb|ADJ48385.1| sulfate adenylyltransferase subunit 2 [Amycolatopsis mediterranei
           U32]
          Length = 306

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS  LL      +       + F  + VD  H       + + +   V  +  + 
Sbjct: 40  FSGGKDSTLLLHL---AIKAFWPAPVPFPLLHVDTGHNF----DEVIEFRDRVVEQHGLR 92

Query: 84  HSVVSWKNSKPQTGLMAAAREAR 106
             V   ++      L   A   R
Sbjct: 93  LVVAKVQDWIDDGRLEERADGMR 115


>gi|297626267|ref|YP_003688030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922032|emb|CBL56594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 357

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 53/192 (27%), Gaps = 28/192 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            + VA+SGG DS      +     +         A+ V   L   +  E R    V   +
Sbjct: 2   RVAVALSGGVDSAVTAARVVEAGHE---------AVGVHLLLGAGSVPETRDARGVADAV 52

Query: 81  RIAHSVVSWKNSKPQ------TGLMAAA----------REARYALISEHAKTINATLIMT 124
            I   V   ++          T   AA           RE ++  +           + T
Sbjct: 53  GIPLVVWDLRDRFEHRVLDYFTSSYAAGRTPNPCLRCNREVKFRGLLSRGIEEGFDAVAT 112

Query: 125 AHTFDDQ-LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            H    Q      +   R    +      +      DL   +        ++++R    +
Sbjct: 113 GHYARLQPARDGSIGLHRAANVRKDQSYVLGVLSQDDLRHCLFPLGTVTTKDEVREEAER 172

Query: 184 RNISWCE--DPS 193
           R +      D +
Sbjct: 173 RGLPVAHKPDST 184


>gi|16272139|ref|NP_438342.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae Rd KW20]
 gi|260580945|ref|ZP_05848769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae RdAW]
 gi|1074294|pir||D64144 probable ATPase HI0174 - Haemophilus influenzae (strain Rd KW20)
 gi|1573129|gb|AAC21843.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
 gi|260092434|gb|EEW76373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae RdAW]
          Length = 418

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 60  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 109

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 110 ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 169

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 170 AEDLGADYIATGH 182


>gi|254181731|ref|ZP_04888328.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1655]
 gi|184212269|gb|EDU09312.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1655]
          Length = 510

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLRLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|145639770|ref|ZP_01795372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittII]
 gi|145271138|gb|EDK11053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae PittII]
 gi|309750410|gb|ADO80394.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Haemophilus influenzae R2866]
          Length = 418

 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 60  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 109

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 110 ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 169

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 170 AEDLGADYIATGH 182


>gi|301168825|emb|CBW28416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae 10810]
          Length = 418

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 60  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 109

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 110 ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 169

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 170 AEDLGADYIATGH 182


>gi|257068069|ref|YP_003154324.1| GMP synthase (glutamine-hydrolyzing) [Brachybacterium faecium DSM
           4810]
 gi|256558887|gb|ACU84734.1| GMP synthase (glutamine-hydrolyzing) [Brachybacterium faecium DSM
           4810]
          Length = 533

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           + IE     +R+ V     + A+SGG DS     A+ + L  R+ G  + + + V+H L 
Sbjct: 204 NVIEEQLERIRAQVGEGSAICALSGGVDS-----AVAAALVQRAIGD-RLTCVYVNHGLM 257

Query: 63  -RETAKD 68
            ++ +  
Sbjct: 258 RQDESAQ 264


>gi|261341045|ref|ZP_05968903.1| ExsB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316911|gb|EFC55849.1| ExsB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 231

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ ALH           +   ++ D+  R  A+ +V    ++   L
Sbjct: 5  VVV-FSGGQDSTTCLIQALHQYD--------EVHCVTFDYGQRHRAEIDVA--RELALNL 53

Query: 81 RI-AHSVVSWK 90
             AH V+   
Sbjct: 54 GARAHKVLDVN 64


>gi|168067145|ref|XP_001785485.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662892|gb|EDQ49692.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 290

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 36/190 (18%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +  P+ +++ +SGG +S  LL       + RS   +    + +++  R  A  E R    
Sbjct: 1   MAGPSSVVL-MSGGIESAVLLY------NWRSSSAL-LHPLYINYGQR-GAAMEERASDK 51

Query: 76  VCSRLRIAHSVVSWKNSKPQ-TGLMAAA--------REA-RYALISEHAKTINATLIMTA 125
           +C+ L +  S +       +   L   A        R      L + +A  + ++ +   
Sbjct: 52  ICNNLGLELSRIDMSAVGNKFRELQHGAKSFVPLPHRNLVILGLAASYASQVGSSKVALG 111

Query: 126 HTFDDQ-----LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
              DD          +M S R  A               +  + +  P     + ++   
Sbjct: 112 LNKDDLGSYSSASQNFMDSFRSTAAS------------LEPPVTLIAPLSHFTKAEVIRL 159

Query: 181 LLQRNISWCE 190
             +  + + +
Sbjct: 160 GKRLGVPFAD 169


>gi|29346480|ref|NP_809983.1| hypothetical protein BT_1070 [Bacteroides thetaiotaomicron
          VPI-5482]
 gi|253568117|ref|ZP_04845528.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298387743|ref|ZP_06997294.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
          1_1_14]
 gi|29338376|gb|AAO76177.1| Predicted phosphoadenosine phosphosulfate reductase [Bacteroides
          thetaiotaomicron VPI-5482]
 gi|251842190|gb|EES70270.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298259599|gb|EFI02472.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
          1_1_14]
          Length = 434

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +I V+ SGG DS  LL      +  R+  KI+     +D+ ++
Sbjct: 28 DNIYVSFSGGKDSGVLLNMCIDYIR-RNNLKIRLGVFHMDYEIQ 70


>gi|21243022|ref|NP_642604.1| GMP synthase [Xanthomonas axonopodis pv. citri str. 306]
 gi|24211748|sp|Q8PK88|GUAA_XANAC RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|21108531|gb|AAM37140.1| glutamine amidotransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 62/188 (32%), Gaps = 27/188 (14%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VREQVGDDEVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAR--EARYALISEHA---------KTINA 119
                    + +   V+    +      +   R  EA+  +I             K  NA
Sbjct: 271 AM---FAEHMGVK--VIRVNAADRYFAKLEGVRDPEAKRKIIGNLFVEIFDEESNKLANA 325

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             +     + D +E+      +      +        +   + L +  P     ++++R 
Sbjct: 326 KWLAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRR 382

Query: 180 FLLQRNIS 187
             ++  + 
Sbjct: 383 LGVELGLP 390


>gi|261492558|ref|ZP_05989111.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495721|ref|ZP_05992165.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308633|gb|EEY09892.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311717|gb|EEY12867.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 523

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +R  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVKRIREQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|260582389|ref|ZP_05850181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae NT127]
 gi|260094540|gb|EEW78436.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus influenzae NT127]
          Length = 418

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 36/133 (27%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 60  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 109

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 110 ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 169

Query: 114 AKTINATLIMTAH 126
           A+ + A  I T H
Sbjct: 170 AEDLGADYIATGH 182


>gi|254360802|ref|ZP_04976949.1| GMP synthase (glutamine-hydrolyzing) [Mannheimia haemolytica
           PHL213]
 gi|153092276|gb|EDN73345.1| GMP synthase (glutamine-hydrolyzing) [Mannheimia haemolytica
           PHL213]
          Length = 523

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +R  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVKRIREQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|119946570|ref|YP_944250.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychromonas ingrahamii 37]
 gi|226739708|sp|A1SYT6|GUAA_PSYIN RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|119865174|gb|ABM04651.1| GMP synthase (glutamine-hydrolyzing) [Psychromonas ingrahamii 37]
          Length = 526

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 72/196 (36%), Gaps = 23/196 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S IE     +++ +    +++ +SGG DS  + + L   + D+       + + VD+ L 
Sbjct: 213 SIIEDAVARMKAQIGDDEVILGLSGGVDSSVVAMLLQRAIGDK------LTCVFVDNGLL 266

Query: 63  RETAKDEVRYVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEH-------- 113
           R     E + V D       +    V+ ++   +     +  EA+  +I           
Sbjct: 267 RLN---EGQQVMDMFGDHFGLKIIHVNAEHRFLEQMAGESDPEAKRKIIGRVFVEIFDEE 323

Query: 114 -AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             K  NA  +     + D +E+      +    + +        +  D+ + +  P    
Sbjct: 324 SKKLKNAKWLAQGTIYPDVIES---AGSKTGKAQVIKSHHNVGGLPDDMEMGLVEPLREL 380

Query: 173 RREDIRSFLLQRNISW 188
            ++++R   L+  + +
Sbjct: 381 FKDEVRKIGLELGLPY 396


>gi|44887927|sp|P60502|GUAA_SPIKU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|34849446|gb|AAP58945.1| GMP synthase [Spiroplasma kunkelii CR2-3x]
          Length = 512

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETA 66
           +++ V   ++++A+SGG DS    + LH  +        + + I VD   LR+ +
Sbjct: 209 IKNKVGTDNVVLALSGGVDSSVCAVLLHKAIGK------QLTCIFVDTGLLRQNS 257


>gi|305667734|ref|YP_003864021.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Maribacter sp. HTCC2170]
 gi|88707571|gb|EAQ99813.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Maribacter sp. HTCC2170]
          Length = 510

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           ++  +    +++ +SGG DS    I LH  +            I V++  LR+    +V
Sbjct: 207 LKKKIGDDKVILGLSGGVDSTVAAILLHKAIGKH------LHCIFVNNGLLRKNEFQDV 259


>gi|146295173|ref|YP_001178944.1| exsB protein [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|167016419|sp|A4XFR8|QUEC_CALS8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|145408749|gb|ABP65753.1| preQ(0) biosynthesis protein QueC [Caldicellulosiruptor
          saccharolyticus DSM 8903]
          Length = 225

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V +SGG DS  LL        D      +   IS  +  ++ +K E+ +    C  L+
Sbjct: 4  VVV-LSGGMDSTTLLY-------DVKNQGYETYTISFLYG-QKHSK-ELEFAKKTCELLK 53

Query: 82 IAHSVVSW 89
          + H +V  
Sbjct: 54 VPHKIVDI 61


>gi|158312012|ref|YP_001504520.1| ExsB family protein [Frankia sp. EAN1pec]
 gi|158107417|gb|ABW09614.1| ExsB family protein [Frankia sp. EAN1pec]
          Length = 486

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 51/178 (28%), Gaps = 31/178 (17%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LVA SGG+DS  LL A    L   +       + S+       A+ +        + 
Sbjct: 222 GSVLVAFSGGADSAFLLAAAARELGPDAVVAATAVSASL-----PAAELDAA--RRFATG 274

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEHAKTINATLIMTAHTFDDQL 132
           L + H +    +     G  A +    Y         ++  A  +    ++T    DD  
Sbjct: 275 LGVRH-LFPATDEMSHEGYRANSSNRCYFCKSELVDTLAPLAAELGLAHVVTGTNADD-- 331

Query: 133 ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
                   R     G+G +                      +  +R+      +   +
Sbjct: 332 -------ARAGFRPGIGAAASRGARTP-------LLDAGLTKAQVRAASRTWGLPTWD 375


>gi|109946881|ref|YP_664109.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter acinonychis str.
           Sheeba]
 gi|122973425|sp|Q17Z16|MNMA_HELAH RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|109714102|emb|CAJ99110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter acinonychis str. Sheeba]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS      L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYNLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++         A  +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSVVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|52347055|gb|AAU39689.1| YeeI [Bacillus licheniformis ATCC 14580]
          Length = 247

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 36/211 (17%)

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
                 +++V +      +  +++     K + G      E RY           A +I+
Sbjct: 49  PELNQNLKFVLERAKTYNVPKAIIERAIEKAKGGSEENYDELRYEGFGP----NGAMVIV 104

Query: 124 TAHTFD------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A T +      D          R    K  G  G+  ++ Y  +      F     ++ 
Sbjct: 105 DALTNNVNRTAAD---------VRSTFGKNGGNMGVSGSVAYMFDPTAVIGFEGKTADET 155

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-VAM 236
              L++ +I                 VR  + + D   +Y +  +F  ++  + NA +  
Sbjct: 156 LELLMEADID----------------VRDILEEDDAVIVYAEPDQFHAVQEALQNAGITE 199

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
                LT+  ++ +A+ +D       L+  L
Sbjct: 200 FTVAELTMLAQNDVALPEDARAQFEKLIDAL 230


>gi|52079186|ref|YP_077977.1| hypothetical protein BL02339 [Bacillus licheniformis ATCC 14580]
 gi|161760694|ref|YP_090382.2| hypothetical protein BLi00754 [Bacillus licheniformis ATCC 14580]
 gi|319647033|ref|ZP_08001259.1| hypothetical protein HMPREF1012_02297 [Bacillus sp. BT1B_CT2]
 gi|67461937|sp|Q65MM5|Y754_BACLD RecName: Full=UPF0082 protein BLi00754/BL02339
 gi|52002397|gb|AAU22339.1| hypothetical protein BL02339 [Bacillus licheniformis ATCC 14580]
 gi|317390857|gb|EFV71658.1| hypothetical protein HMPREF1012_02297 [Bacillus sp. BT1B_CT2]
          Length = 239

 Score = 40.7 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 36/211 (17%)

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
                 +++V +      +  +++     K + G      E RY           A +I+
Sbjct: 41  PELNQNLKFVLERAKTYNVPKAIIERAIEKAKGGSEENYDELRYEGFGP----NGAMVIV 96

Query: 124 TAHTFD------DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
            A T +      D          R    K  G  G+  ++ Y  +      F     ++ 
Sbjct: 97  DALTNNVNRTAAD---------VRSTFGKNGGNMGVSGSVAYMFDPTAVIGFEGKTADET 147

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNA-VAM 236
              L++ +I                 VR  + + D   +Y +  +F  ++  + NA +  
Sbjct: 148 LELLMEADID----------------VRDILEEDDAVIVYAEPDQFHAVQEALQNAGITE 191

Query: 237 LIPKYLTVHMRSIIAISQDILNIDSTLLFYL 267
                LT+  ++ +A+ +D       L+  L
Sbjct: 192 FTVAELTMLAQNDVALPEDARAQFEKLIDAL 222


>gi|322417975|ref|YP_004197198.1| PP-loop domain-containing protein [Geobacter sp. M18]
 gi|320124362|gb|ADW11922.1| PP-loop domain protein [Geobacter sp. M18]
          Length = 268

 Score = 40.7 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 55/205 (26%), Gaps = 54/205 (26%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           SP +        L     ILVA SGG DS  LL A        + G  +  A++      
Sbjct: 3   SPQDKYTKLQEILRDMGSILVAFSGGVDSTFLLKAAMD-----TLGSERVLAVT------ 51

Query: 64  ETA----KDEVRYVSDVCS------------RLRIAHSVVSWKNSKPQTGLMAAAREARY 107
            T+    + E+     + +             L I     + K+               +
Sbjct: 52  ATSPTYPESELSEAKRLAATIGATQLLVESNELEIPGFSHNPKDRCYHCKSEL------F 105

Query: 108 ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            +  + A+ +    +      DD                   L       +    L +  
Sbjct: 106 RICGDKARELGFACVADGSNTDD-------------------LGDYRPGRVAACELKVRS 146

Query: 168 PFL--RCRREDIRSFLLQRNISWCE 190
           P L     + +IR       +   +
Sbjct: 147 PLLEAELSKGEIRELSRGLGLPTWD 171


>gi|237742539|ref|ZP_04573020.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 4_1_13]
 gi|229430187|gb|EEO40399.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 4_1_13]
          Length = 512

 Score = 40.7 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 25/198 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IES    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IESTVKQIKGRVGNKQVILGLSGGVDSSVAAALINKAIGK------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +V ++   + I       +        + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFDMNIKCINAEERFLTKLAGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           K   A  +     + D +E+V ++      +    + G+ + + ++    +  P     +
Sbjct: 313 KIEGAEFLAQGTIYPDVIESVSVKGPSVTIKSHHNVGGLPEDLKFE----LLEPLRELFK 368

Query: 175 EDIRSFLLQRNIS-WCED 191
           +++R    +  I  +  D
Sbjct: 369 DEVRKVGRELGIPDYMVD 386


>gi|237736430|ref|ZP_04566911.1| argininosuccinate synthase [Fusobacterium mortiferum ATCC 9817]
 gi|229421472|gb|EEO36519.1| argininosuccinate synthase [Fusobacterium mortiferum ATCC 9817]
          Length = 399

 Score = 40.7 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 62/190 (32%), Gaps = 46/190 (24%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              +++A SGG D S+     +   L + ++  ++  A+SVD       KD+   V    
Sbjct: 2   KEKVVLAYSGGLDTSV-----IVPWLKE-NYNDVEVIAVSVDVGQ----KDDFMEVEKRA 51

Query: 78  SRLRI-AHSVVSWKNS----------KPQTGLMAA-------AREARYALISEHAKTINA 119
             +      VV  K+           K               AR      + E A    A
Sbjct: 52  LAIGASKFYVVDKKDELVNDFIFPMLKSGAKYENEYLLGTSIARPVIAKALVEIALKEGA 111

Query: 120 TLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
             I    T   +DQ+     R +         +  +    ++D         ++ R+++I
Sbjct: 112 NYIAHGATGKGNDQV-----RFELGVKALAPNIKIIAPWRVWD---------IKSRKQEI 157

Query: 178 RSFLLQRNIS 187
             +L   NI 
Sbjct: 158 E-YLKSHNID 166


>gi|166712367|ref|ZP_02243574.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VREQVGDDDVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    V     +           A R+    L  E          NA  
Sbjct: 271 AM---FAEHMGVKVIRVNAADRYFAKLEGVSDPEAKRKIIGNLFVEIFDEESNTLANAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMTLGLVEPLRELFKDEVRRLG 384

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 385 VELGLP 390


>gi|53724688|ref|YP_102067.1| asparagine synthase [Burkholderia mallei ATCC 23344]
 gi|67641475|ref|ZP_00440253.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia mallei
           GB8 horse 4]
 gi|121598552|ref|YP_994008.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei SAVP1]
 gi|167003918|ref|ZP_02269697.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei PRL-20]
 gi|254177034|ref|ZP_04883691.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei ATCC 10399]
 gi|254203751|ref|ZP_04910111.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei FMH]
 gi|254208727|ref|ZP_04915075.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei JHU]
 gi|52428111|gb|AAU48704.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia mallei
           ATCC 23344]
 gi|121227362|gb|ABM49880.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei SAVP1]
 gi|147745263|gb|EDK52343.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei FMH]
 gi|147750603|gb|EDK57672.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei JHU]
 gi|160698075|gb|EDP88045.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei ATCC 10399]
 gi|238522416|gb|EEP85860.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia mallei
           GB8 horse 4]
 gi|243060645|gb|EES42831.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei PRL-20]
          Length = 510

 Score = 40.7 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLRLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|319760524|ref|YP_004124462.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039238|gb|ADV33788.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 366

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 35/134 (26%), Gaps = 38/134 (28%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS----- 74
             ++V +SGG DS      L           +K               D   + +     
Sbjct: 2   KKVIVGISGGVDSSVSAWLLKKRGYKVEGLFMKNW----------ENDDTQEFCASKSDL 51

Query: 75  ----DVCSRLRIAHSVVSWKNSKPQTG------------------LMAAAREARYALISE 112
                VC+ L+I    V++                          L     + +Y  +  
Sbjct: 52  IDACSVCNTLKIPLHTVNFSREYWNNVFKVFLKLYNIGLTPNPDILCNKEIKFKY-FLEF 110

Query: 113 HAKTINATLIMTAH 126
             + + A  I T H
Sbjct: 111 AIEDLGADFIATGH 124


>gi|303243602|ref|ZP_07329944.1| argininosuccinate synthase [Methanothermococcus okinawensis IH1]
 gi|302486163|gb|EFL49085.1| argininosuccinate synthase [Methanothermococcus okinawensis IH1]
          Length = 417

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 57/197 (28%), Gaps = 55/197 (27%)

Query: 16  LVYPAHILV-AVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           +     I V A SGG D S  L      +L D+     K  +  VD    E    E    
Sbjct: 19  MAEKEKIAVLAYSGGLDTSCCL-----KLLEDK--YNYKVVSACVDVGQPEEDLKEPE-- 69

Query: 74  SDVCSRLRI-AHSVVSWKNSKPQTGLMAA----------------AREARYALISEHAKT 116
            +   +  + AH  +  K    +  +  A                AR      + E A+ 
Sbjct: 70  -EKAKKYGVYAHYTIDAKEEFARDYIFRAIKANAMYEGYPLSTSLARPLIALKLVELARE 128

Query: 117 INATLIMTAHT--FDDQ--LETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--L 170
           +NA  I    T   +DQ   ET+                          ++ +  P   L
Sbjct: 129 LNADAIAHGCTGKGNDQFRFETII--------------------RAKAPDMEVIAPIRDL 168

Query: 171 RCRREDIRSFLLQRNIS 187
              R +   +  Q  I 
Sbjct: 169 NLTRNEEIEYAKQNGIP 185


>gi|295399520|ref|ZP_06809502.1| argininosuccinate synthase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978986|gb|EFG54582.1| argininosuccinate synthase [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 402

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 57/192 (29%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            I++A SGG D S+         L +R +      A  +D         ++ +V +   +
Sbjct: 5   KIVLAYSGGLDTSVA-----IKWLQERGY---DVIACCLDLG----EGKDLDFVKEKALK 52

Query: 80  LR-IAHSVVSWKNS-KPQTGLMAAAREARYA----------------LISEHAKTINATL 121
           +  I   V+  K     +  L+A    A Y                  + E A+   A  
Sbjct: 53  VGAIKSYVIDVKEEFANEYALIALQAHALYEGKYPLVSALSRPLISKKLVEIAELEGA-- 110

Query: 122 IMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRE 175
           +  AH      +DQ+                           + +L +  P       RE
Sbjct: 111 VAVAHGCTGKGNDQV------------------RFEVSIKALNPHLEVVAPVREWSWSRE 152

Query: 176 DIRSFLLQRNIS 187
           +   +  +  I 
Sbjct: 153 EEIEYAKKHGIP 164


>gi|239832974|ref|ZP_04681303.1| exsB protein [Ochrobactrum intermedium LMG 3301]
 gi|239825241|gb|EEQ96809.1| exsB protein [Ochrobactrum intermedium LMG 3301]
          Length = 232

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 12/70 (17%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-ISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS+ L          R  G+ + +A +S D+  R   + E+        RL
Sbjct: 4  LVV-CSGGLDSVSLAY--------RIAGEHQLTALLSFDYGQRH--RKELDSAKACAERL 52

Query: 81 RIAHSVVSWK 90
             H ++  +
Sbjct: 53 GAPHQIIDIR 62


>gi|237745234|ref|ZP_04575715.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 7_1]
 gi|229432463|gb|EEO42675.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. 7_1]
          Length = 512

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 33/202 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE+    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 202 IETTVKKIKERVGNKKVILGLSGGVDSSVAAALINKAIGK------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSDVCSR---LRIAHSVVSWK-------NSKPQTGLMAAAREARYALISEHA 114
             KDE + V +V ++   + I       +        + P+T      +E       E  
Sbjct: 255 --KDEAKQVMEVYAKNFDMNIKCINAEERFLTKLTGVTDPETKRKIIGKEFVEVFNEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFL 170
           K   A  +     + D +E+V        + KG  +          +  DL   +  P  
Sbjct: 313 KIEGAEFLAQGTIYPDVIESV--------SVKGPSVTIKSHHNVGGLPKDLKFELLEPLR 364

Query: 171 RCRREDIRSFLLQRNIS-WCED 191
              ++++R    +  I  +  D
Sbjct: 365 ELFKDEVRKVGRELGIPDYMVD 386


>gi|227548033|ref|ZP_03978082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079887|gb|EEI17850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 359

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 45/195 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RETAK-----D 68
            +L A+SGG DS      L     D          + V   L       RE+A+     +
Sbjct: 2   RVLAAMSGGVDSSVAAARLVDAGHD---------VVGVHLALSRDPQATRESARGCCSLE 52

Query: 69  EVRYVSDVCSRLRIAHSVVSW---------------KNSKPQTGLMAAA-REARYALISE 112
           +      VC +L I   V  +                ++            + ++A + +
Sbjct: 53  DSADARRVCDKLGIPFYVWDFSDRFKAEVIDNFVWSYDNGETPNPCLRCNEKIKFAALLD 112

Query: 113 HAKTINATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            A  +    + T H    DD+       + R  A+     S +   +          P  
Sbjct: 113 RALALGFDAVATGHYAIVDDE------GNLRRSADPLKDQSYVLGVLTRAELDRCIFPVG 166

Query: 171 RCRREDIRSFLLQRN 185
              +  IR    +  
Sbjct: 167 DTEKPQIREEAKRHG 181


>gi|254513982|ref|ZP_05126043.1| GMP synthetase [gamma proteobacterium NOR5-3]
 gi|219676225|gb|EED32590.1| GMP synthetase [gamma proteobacterium NOR5-3]
          Length = 524

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             +E     V+  V   H+L+ +SGG DS  +   LH  + D      + + + VD+ L
Sbjct: 211 RIVEDAIARVKDTVGDDHVLLGLSGGVDSSVVAALLHRAIGD------QLTCVFVDNGL 263


>gi|84496234|ref|ZP_00995088.1| sulfate adenylyltransferase subunit 2 [Janibacter sp. HTCC2649]
 gi|84383002|gb|EAP98883.1| sulfate adenylyltransferase subunit 2 [Janibacter sp. HTCC2649]
          Length = 322

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V  L  P  +L+  SGG DS+ +L              I F  + VD  H 
Sbjct: 37  EAILIIREVVGELERP--VLL-FSGGKDSVIMLHLAAKAF---WPAPIPFPVLHVDTGHN 90

Query: 62  LRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----ISEHAKT 116
             E  A  +     +   RL +   V S ++      L   A   R AL    + +    
Sbjct: 91  FPEVLAYRD-----ETVERLGLRLEVASVQDYLDDGRLRERADGLRNALQTVPLLDAINE 145

Query: 117 INATLIMTAHTFD 129
                +      D
Sbjct: 146 HRFDGVFGGGRRD 158


>gi|124385910|ref|YP_001028328.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei NCTC 10229]
 gi|126448747|ref|YP_001081972.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei NCTC 10247]
 gi|237810923|ref|YP_002895374.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei MSHR346]
 gi|254360221|ref|ZP_04976491.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei 2002721280]
 gi|124293930|gb|ABN03199.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei NCTC 10229]
 gi|126241617|gb|ABO04710.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei NCTC 10247]
 gi|148029461|gb|EDK87366.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           mallei 2002721280]
 gi|237506369|gb|ACQ98687.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei MSHR346]
          Length = 510

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLRLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|317013122|gb|ADU83730.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori
           Lithuania75]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWK---------------NSKPQTGLMAAAR-EARYALISEHAKTIN 118
             C  L I   V+ ++                        A      ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGKTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|95930425|ref|ZP_01313161.1| GMP synthase [Desulfuromonas acetoxidans DSM 684]
 gi|95133465|gb|EAT15128.1| GMP synthase [Desulfuromonas acetoxidans DSM 684]
          Length = 519

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 27/196 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RE 64
           IE     +R  V    +++ +SGG DS      +H  + D      + + + VD+ L R 
Sbjct: 208 IEDAVARIREQVGTDKVILGLSGGVDSSVAAALIHRAIGD------QLTCVFVDNGLLRL 261

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALISEHAKTI 117
              D+V   S     L +   V+              +T      R+    L  +  +  
Sbjct: 262 NEGDQVM--STFAQNLGVK--VIRVDAEDRFLTALAGETDPEKK-RKIIGGLFVDIFEEE 316

Query: 118 -----NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                +A  +     + D +E+      +      +        +   + L +  P    
Sbjct: 317 SNKLTDAKWLAQGTIYPDVIES---AGAKTGKAHNIKSHHNVGGLPDYMKLQLLEPLREL 373

Query: 173 RREDIRSFLLQRNISW 188
            ++++R+   +  +  
Sbjct: 374 FKDEVRTVGEELGLPH 389


>gi|84623720|ref|YP_451092.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|91206840|sp|Q2P3Q9|GUAA_XANOM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|91206841|sp|Q5H0S2|GUAA_XANOR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|84367660|dbj|BAE68818.1| GMP synthase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VREQVGDDDVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    V     +           A R+    L  E          NA  
Sbjct: 271 AM---FAEHMGVKVIRVNAADRYFAKLEGVSDPEAKRKIIGNLFVEIFDEESNTLANAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGSKTGNAHVIKSHHNVGGLPQHMKLGLVEPLRELFKDEVRRLG 384

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 385 VELGLP 390


>gi|302886013|ref|XP_003041897.1| hypothetical protein NECHADRAFT_97500 [Nectria haematococca mpVI
           77-13-4]
 gi|256722804|gb|EEU36184.1| hypothetical protein NECHADRAFT_97500 [Nectria haematococca mpVI
           77-13-4]
          Length = 549

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 4   SPIESVRFFVRSLVY-PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             IE     +R LV   A ++ AVSGG DS      +   + DR      F A+ +D+ L
Sbjct: 225 DFIEQEIARIRKLVGDKAQVIGAVSGGVDSTVAAKLMKEAIGDR------FHAVLIDNGL 278

Query: 63  -RETAKDEVRYVSDVCSR-LRIAHSVVS 88
            R     E   V +   + L I  +VV 
Sbjct: 279 MRLN---ECEQVKETLQQHLGINLTVVD 303


>gi|148827363|ref|YP_001292116.1| GMP synthase [Haemophilus influenzae PittGG]
 gi|226739627|sp|A5UG27|GUAA_HAEIG RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|148718605|gb|ABQ99732.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus influenzae PittGG]
          Length = 523

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGNDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFVDNGL 262


>gi|110816246|sp|Q4FTN4|QUEC_PSYA2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
          Length = 259

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V +SGG DS+  L    +  +         +A+S D+  R  +  E+     +     +
Sbjct: 29 VVLLSGGLDSVTCLYWAKARYA-------SVTAVSFDYGQRHNS--ELIAAKAIAETAGV 79

Query: 83 AHSVVSWKNSKPQTG 97
           H ++    ++    
Sbjct: 80 NHRIIDIDIAQLGGS 94


>gi|71065331|ref|YP_264058.1| ExsB family transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71038316|gb|AAZ18624.1| probable ExsB protein [Psychrobacter arcticus 273-4]
          Length = 285

 Score = 40.7 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           +V +SGG DS+  L    +  +         +A+S D+  R  +  E+     +     +
Sbjct: 55  VVLLSGGLDSVTCLYWAKARYA-------SVTAVSFDYGQRHNS--ELIAAKAIAETAGV 105

Query: 83  AHSVVSWKNSKPQTG 97
            H ++    ++    
Sbjct: 106 NHRIIDIDIAQLGGS 120


>gi|225407963|ref|ZP_03761152.1| hypothetical protein CLOSTASPAR_05184 [Clostridium asparagiforme
          DSM 15981]
 gi|225042503|gb|EEG52749.1| hypothetical protein CLOSTASPAR_05184 [Clostridium asparagiforme
          DSM 15981]
          Length = 299

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 7/42 (16%)

Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          Y  ++ V+ SGG DS  LL        +         A+ VD
Sbjct: 24 YGGNVAVSFSGGKDSTVLLDMARRAFPE-------IRAVFVD 58


>gi|242001366|ref|XP_002435326.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215498656|gb|EEC08150.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 425

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 15  SLVYPA-HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVD 59
            L+ P   ILVA SGG  S  +L  L    ++ +  +  F      +D
Sbjct: 67  KLIKPKQKILVAFSGGPSSAAMLTLLLDGFAEDAHKRFLFEPHLAHID 114


>gi|170289348|ref|YP_001739586.1| NAD+ synthetase [Thermotoga sp. RQ2]
 gi|281412952|ref|YP_003347031.1| NAD+ synthetase [Thermotoga naphthophila RKU-10]
 gi|170176851|gb|ACB09903.1| NAD+ synthetase [Thermotoga sp. RQ2]
 gi|281374055|gb|ADA67617.1| NAD+ synthetase [Thermotoga naphthophila RKU-10]
          Length = 576

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF + I  +R +VR   +   +++ +SGG DS      L +V++  + GK     +    
Sbjct: 298 MFRALITGLRDYVRKNGFE-KVVIGLSGGMDSS-----LVAVIATEALGKENVKGV---- 347

Query: 61  CL------RETAKDEVRYVSDVCSRLRIAHSVVSWKN 91
            L       + + ++      +   L I   ++   +
Sbjct: 348 -LMPSMYTSKESIEDA---QTLAKNLGIETFIIPITD 380


>gi|148270642|ref|YP_001245102.1| NAD synthetase [Thermotoga petrophila RKU-1]
 gi|147736186|gb|ABQ47526.1| NH(3)-dependent NAD(+) synthetase [Thermotoga petrophila RKU-1]
          Length = 576

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF + I  +R +VR   +   +++ +SGG DS      L +V++  + GK     +    
Sbjct: 298 MFRALITGLRDYVRKNGFE-KVVIGLSGGMDSS-----LVAVIATEALGKENVKGV---- 347

Query: 61  CL------RETAKDEVRYVSDVCSRLRIAHSVVSWKN 91
            L       + + ++      +   L I   ++   +
Sbjct: 348 -LMPSMYTSKESIEDA---QTLAKNLGIETFIIPITD 380


>gi|15644009|ref|NP_229058.1| NAD synthetase [Thermotoga maritima MSB8]
 gi|8928238|sp|Q9X0Y0|NADE2_THEMA RecName: Full=Probable glutamine-dependent NAD(+) synthetase;
           AltName: Full=NAD(+) synthase [glutamine-hydrolyzing]
 gi|4981808|gb|AAD36328.1|AE001780_12 NH(3)-dependent NAD(+) synthetase [Thermotoga maritima MSB8]
          Length = 576

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 20/97 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           MF + I  +R +VR   +   +++ +SGG DS      L +V++  + GK     +    
Sbjct: 298 MFRALITGLRDYVRKNGFE-KVVIGLSGGMDSS-----LVAVIATEALGKENVKGV---- 347

Query: 61  CL------RETAKDEVRYVSDVCSRLRIAHSVVSWKN 91
            L       + + ++      +   L I   ++   +
Sbjct: 348 -LMPSMYTSKESIEDA---QTLAKNLGIETFIIPITD 380


>gi|325925929|ref|ZP_08187297.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas perforans 91-118]
 gi|325543652|gb|EGD15067.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas perforans 91-118]
          Length = 521

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VREQVGDDEVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    V     +           A R+    L  E          NA  
Sbjct: 271 AM---FAKHMGVKVIRVNAADRYFAKLEGVSDPEAKRKIIGNLFVEIFDEESNKLANAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRRLG 384

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 385 VELGLP 390


>gi|302828090|ref|XP_002945612.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
           nagariensis]
 gi|300268427|gb|EFJ52607.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f.
           nagariensis]
          Length = 402

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 59/205 (28%), Gaps = 51/205 (24%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK---------DEVR 71
           ++ V +SGG DS   L  L +         ++          +E  +         ++++
Sbjct: 6   NVAVLLSGGVDSSLALRLLRAAGHTCHAFYLQIW-------FQEDFRNFWGACPWEEDLQ 58

Query: 72  YVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARY--------------ALISEHA 114
           Y   VC  L +   VV        +  +G +   R  R               A      
Sbjct: 59  YARQVCESLGVPLEVVPLTTEYWDRVVSGSVEEIRAGRTPNPDMWCNSRVKFGAFYDYLD 118

Query: 115 KTINA--TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTI----------LYDLN 162
           +T  A    + + H    ++E    R  R  +   + L    D +               
Sbjct: 119 RTYGAAFDRVASGHYA--RVE----RVPRRSSPAEVRLLLTPDAVKDQTYFLANLSPRQL 172

Query: 163 LWISRPFLRCRREDIRSFLLQRNIS 187
             +  P     +  +R      +++
Sbjct: 173 SRVMFPLGCLTKSQVRKLAAAADLA 197


>gi|121588012|ref|ZP_01677764.1| exsB protein [Vibrio cholerae 2740-80]
 gi|121547753|gb|EAX57844.1| exsB protein [Vibrio cholerae 2740-80]
          Length = 231

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     +  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYSQRH--KLEIEVAQQLAKQL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|15679679|ref|NP_276796.1| hypothetical protein MTH1685 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3915120|sp|O27720|THII_METTH RecName: Full=Probable tRNA sulfurtransferase; AltName: Full=Sulfur
           carrier protein ThiS sulfurtransferase; AltName:
           Full=Thiamine biosynthesis protein thiI; AltName:
           Full=tRNA 4-thiouridine synthase
 gi|2622815|gb|AAB86157.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 389

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 53/182 (29%), Gaps = 46/182 (25%)

Query: 23  LVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSDVC 77
           +VA+ SGG DS      +            +  A+ +D      A    ++    V  + 
Sbjct: 180 VVALLSGGIDSPVATYLMMK-------RGCQVVAVHMD-----NAPFTGEEAEEKVEKIA 227

Query: 78  SRL-----RIAHSVVSW---------KNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
           ++L      +   + ++         +   P+       +   Y L    A+   A  I+
Sbjct: 228 AKLAEYSAGVEFKLRTFSYGRYLESCRRGAPEKMTCVLCKFGMYHLAEMVAEEEGALAIV 287

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
                                     L  +  T +  +N+ I  P +   + +I +   +
Sbjct: 288 DG--------------SSLGQVASQTLPNILATRM-GVNIPILSPLIGMDKVEIENLAKR 332

Query: 184 RN 185
             
Sbjct: 333 IG 334


>gi|114563048|ref|YP_750561.1| exsB protein [Shewanella frigidimarina NCIMB 400]
 gi|122299841|sp|Q082U2|QUEC_SHEFN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|114334341|gb|ABI71723.1| exsB protein [Shewanella frigidimarina NCIMB 400]
          Length = 235

 Score = 40.7 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 44/194 (22%)

Query: 19  PAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
           P   LV  SGG DS   L+ AL            +   I+ D+  R   + E+     + 
Sbjct: 9   PTKALVVFSGGQDSTTCLIQALSQYD--------EVHGITFDYGQRH--RQEIEVAKSLA 58

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAAREA-------------------R----YALISEHA 114
           + L++A   V       +  + A  R+A                   R      L   +A
Sbjct: 59  TELKLASHKVMDTTLLNELAISALTRDAIPVSHELMNNGLPNTFVPGRNILFLTLAGIYA 118

Query: 115 KTINATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
             +    I+T        ET +      R+   + M  S        D  L I  P +  
Sbjct: 119 YQLGCDAIITG-----VCETDFSGYPDCRNEFVQSMQNSLALGM---DKPLKIITPLMWL 170

Query: 173 RREDIRSFLLQRNI 186
            + +  +   +   
Sbjct: 171 NKAETWALADKYQQ 184


>gi|301605226|ref|XP_002932238.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Xenopus
           (Silurana) tropicalis]
          Length = 418

 Score = 40.7 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 38/127 (29%), Gaps = 24/127 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDR-SFGKIKFSAISVD-HCL-RETAKDEVRYVSDV 76
             ++ A+SGG DS    + L     +        + A  VD H +       E  Y   V
Sbjct: 5   RRVVCAMSGGVDSSVAALLLRRRGYEVTGVFMNNWDA--VDEHGVCSAERDCEDAY--RV 60

Query: 77  CSRLRIAHSVVSWKNSKPQT------GLMAAAR----------EARYALISEHAKTI-NA 119
           C +L I    VS+                   R            ++     +A  I  A
Sbjct: 61  CKKLDIPFHQVSYVKEYWHEVFSYFLNEYEKGRTPNPDILCNKHIKFNHFLSYAIDILGA 120

Query: 120 TLIMTAH 126
             I T H
Sbjct: 121 DAIATGH 127


>gi|291060141|gb|ADD72876.1| probable glutamine-dependent NAD(+) synthetase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 674

 Score = 40.7 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
             ++V VSGG DS   L+     L   S  + +  A++
Sbjct: 366 RRLVVGVSGGVDSACALLICARALDFLSIARTQLYALT 403


>gi|297569514|ref|YP_003690858.1| GMP synthase, large subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925429|gb|ADH86239.1| GMP synthase, large subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 518

 Score = 40.7 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 64/194 (32%), Gaps = 25/194 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     +R +V    +++ +SGG DS      +H  + +      + + + VD   LR 
Sbjct: 207 IEDAVARIREMVGTDQVILGLSGGVDSSVAAALIHRAIGE------QLTCVFVDTGLLRL 260

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM------AAAREARYALI-----SEH 113
              D+V   +     + +   V+     +     +         R+    L         
Sbjct: 261 GEGDQVM--ATFAENMGVK--VLRVDAEERFLSALVDVEDPEQKRKIIGNLFITIFEEAA 316

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            K  +A  +     + D +E+      +    + +        +   + L +  P     
Sbjct: 317 GKLEDARWLAQGTIYPDVIES---AGGKTGKAQNIKSHHNVGGLPEKMKLALLEPLRELF 373

Query: 174 REDIRSFLLQRNIS 187
           ++++R+   +  + 
Sbjct: 374 KDEVRALGDELGLP 387


>gi|242398524|ref|YP_002993948.1| predicted ATPase, PP-loop superfamily [Thermococcus sibiricus MM
           739]
 gi|242264917|gb|ACS89599.1| predicted ATPase, PP-loop superfamily [Thermococcus sibiricus MM
           739]
          Length = 203

 Score = 40.7 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 46/164 (28%), Gaps = 36/164 (21%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCSRLRIAH 84
            SGG DS      L  +         +   ++V+   L        +Y  +    L   H
Sbjct: 7   YSGGKDSSLAAYILKRL-------GYEVKLVTVNFGVL----DSW-KYARETAQSLGFEH 54

Query: 85  SVVSWKNSKPQTGLMAA--------AREARYA-LISEHAKTINATLIMTAHTFDDQLETV 135
            V        +              A +  +   + E A+  +   I      DD++  +
Sbjct: 55  EVRFLDRKILEKATEMCIKDNHPNNAIQFIHEMALEEIARCEDVERISDGTRRDDRVPLL 114

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             R  R   ++               N+   RP L    + IR 
Sbjct: 115 DQRKTRSLEDRF--------------NVQYIRPLLGLGYKTIRE 144


>gi|308234429|ref|ZP_07665166.1| NAD+ synthetase [Atopobium vaginae DSM 15829]
 gi|328944276|ref|ZP_08241740.1| NAD synthetase [Atopobium vaginae DSM 15829]
 gi|327491195|gb|EGF22970.1| NAD synthetase [Atopobium vaginae DSM 15829]
          Length = 647

 Score = 40.7 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 47/151 (31%), Gaps = 32/151 (21%)

Query: 6   IESVRFFVRSLVYPAH-ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV------ 58
           I++     R L      +++ VSGG DS   L+            +    A+++      
Sbjct: 334 IQAHGLAKRLLHTHTKTVVLGVSGGLDSTLALLVCARAFDMIGLDRAGIIAVTMPGFGTT 393

Query: 59  --DHCLRETAK--DEVRYV--------SDVCSRL-RIAHSVVSWKNSKPQTGLMAAAREA 105
              H     A    +V +         + V      IAH V         +     ARE 
Sbjct: 394 ERTHG---NAAVLADVLHATLKEIPISAAVLQHFEDIAHDVHDKDVVYENS----QARE- 445

Query: 106 RYALISEHAKTINATLIMTAHTFDDQLETVY 136
           R  ++ + A    A +I T     D  E   
Sbjct: 446 RTQILMDIANQEGALVIGTG----DLSELAL 472


>gi|15639767|ref|NP_219217.1| NAD synthetase [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189026005|ref|YP_001933777.1| NAD synthetase [Treponema pallidum subsp. pallidum SS14]
 gi|8928217|sp|O83759|NADE_TREPA RecName: Full=Probable glutamine-dependent NAD(+) synthetase;
           AltName: Full=NAD(+) synthase [glutamine-hydrolyzing]
 gi|3323089|gb|AAC65748.1| NH(3)-dependent NAD(+) synthetase (nadE) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018580|gb|ACD71198.1| NH(3)-dependent NAD(+) synthetase [Treponema pallidum subsp.
           pallidum SS14]
          Length = 679

 Score = 40.7 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
             ++V VSGG DS   L+     L   S  + +  A++
Sbjct: 371 RRLVVGVSGGVDSACALLICARALDFLSIARTQLYALT 408


>gi|157132179|ref|XP_001662501.1| hypothetical protein AaeL_AAEL012347 [Aedes aegypti]
 gi|108871268|gb|EAT35493.1| hypothetical protein AaeL_AAEL012347 [Aedes aegypti]
          Length = 1346

 Score = 40.7 bits (94), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 15/139 (10%)

Query: 108  ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
              +++ A      ++  A++ D   +              +       T      + I R
Sbjct: 1205 ERLTQVAHRRGYNVLAMANSLDKLADRFLGSLLYKGKLNPLQAISTTSTATGSRQIRIIR 1264

Query: 168  PFLRCRREDIRSFLLQRNISWC--------EDPSNTDDRFERV-------RVRRFVRDID 212
            P L  R   +  F   R +            D +N+  R + V        +R  ++ + 
Sbjct: 1265 PLLYIRERSLEDFAAARALPTRPSHLFTRPPDATNSILRTQEVTNPNVYGNIRSALKPLM 1324

Query: 213  LHALYLKMKKFQDLRVKVN 231
               L      ++ LR  ++
Sbjct: 1325 ALRLESTKSTYETLRASLD 1343


>gi|323497100|ref|ZP_08102123.1| asparagine synthase [Vibrio sinaloensis DSM 21326]
 gi|323317944|gb|EGA70932.1| asparagine synthase [Vibrio sinaloensis DSM 21326]
          Length = 566

 Score = 40.7 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA 55
           +FL+ +E      R       I VAVSGG DS  ++ A+  +  DR      F  
Sbjct: 230 LFLAAVE------RRYRVEEKIGVAVSGGLDSRAIVAAISKLHPDREGFGYTFGV 278


>gi|262037400|ref|ZP_06010864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
 gi|261748562|gb|EEY35937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptotrichia goodfellowii F0264]
          Length = 364

 Score = 40.7 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 56/192 (29%), Gaps = 36/192 (18%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC---LRET------AKDEV 70
             ++V +SGG DS    + L +          +   +++ H    L E       + D++
Sbjct: 8   KKVIVGMSGGIDSSVAALLLKN-------EGYEVIGVTLKHLPDELSENPGKTCCSLDDI 60

Query: 71  RYVSDVCSRLRIAHSVVSW---------------KNSKPQTGLMAAA-REARYALISEHA 114
                 C  L I H  ++                 N             + +   + + A
Sbjct: 61  SDAKMTCYTLGIPHYTINVVEEFQKEVMDYFIKMYNEGKTPSPCIICDEKVKIKKLVDFA 120

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
                  I T H     +  + +  + +  ++   L  +  +++         P     +
Sbjct: 121 DKTGVKYIATGHYSKKSMNNLLLWDENNPKDQSYMLYRLDKSVIER----FLFPLSEYEK 176

Query: 175 EDIRSFLLQRNI 186
             +R    +  I
Sbjct: 177 PTVRQIAKENGI 188


>gi|20093511|ref|NP_613358.1| PP family ATPase [Methanopyrus kandleri AV19]
 gi|19886346|gb|AAM01288.1| ATP-utilizing enzymes of the PP-loop superfamily [Methanopyrus
           kandleri AV19]
          Length = 253

 Score = 40.7 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 22/121 (18%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           FLS + ++  +++       + VA SGG+DS  LL A    L     G+    A +    
Sbjct: 4   FLSRLRALISYIKK--TYDRVAVAYSGGTDSSVLLYAAVKAL-----GRKNVVACT---- 52

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATL 121
                   + YV +VC       + +  K  + +  +    RE R        K      
Sbjct: 53  ------ACLPYVVNVC-----PPTPMDVKQIRIRPDVEDVLREGRDEHPCYLCKRAIYEA 101

Query: 122 I 122
           I
Sbjct: 102 I 102


>gi|251772733|gb|EES53295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Leptospirillum ferrodiazotrophum]
          Length = 372

 Score = 40.7 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 64/209 (30%), Gaps = 53/209 (25%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--RETAKDEVR-- 71
           +     I++ +SGG DS      L     D +   ++             E +K      
Sbjct: 1   MKRNKSIVIGMSGGVDSAVSAWLLKKEGYDVTGVILRLW------GKDSSEASKGWGERT 54

Query: 72  -----YVSDVCSR-LRIAHSVVSWKNSKPQ---TGLMAAAR-------------EARYAL 109
                 V  +C + L I +++V  +++          +A R             + +  L
Sbjct: 55  CCHVPMVEYLCQKILNIPYAIVDAESAFKSDVVDSFKSAYRTGETPNPCTSCNEKVKLPL 114

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR-- 167
           +   A+      + T H       T +   +R       GL+ M   +  D + ++SR  
Sbjct: 115 LRRWAEENGIPKVATGHY------TYW---KRSEDFNVSGLA-MAHDLAKDQSYFLSRTP 164

Query: 168 ---------PFLRCRREDIRSFLLQRNIS 187
                    P  R  +  +R    +    
Sbjct: 165 DLCPENTVFPVGRMSKPQVRELAREAGFP 193


>gi|293332519|ref|NP_001169688.1| hypothetical protein LOC100383569 [Zea mays]
 gi|224030901|gb|ACN34526.1| unknown [Zea mays]
          Length = 545

 Score = 40.7 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E ++    ++    H++ A+SGG DS      +H  + DR         + VD+ L
Sbjct: 226 EEIKTIQSTVGPDEHVICALSGGVDSTVAATLVHKAIGDR------LHCVFVDNGL 275


>gi|325833497|ref|ZP_08165946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eggerthella sp. HGA1]
 gi|325485421|gb|EGC87890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Eggerthella sp. HGA1]
          Length = 352

 Score = 40.7 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 59/219 (26%), Gaps = 48/219 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVC 77
             I + +SGG DS      L            +   ++     R+    +      + VC
Sbjct: 5   GRIALGMSGGVDSAVSAALLMR-------AGYEVVGVTC--RFRDNAATERAAADAAAVC 55

Query: 78  SRLRIAHSVVSWKNSKPQTGLM------AAA----------REARYALISEHAKTINATL 121
           S+L I H          +  +       AA              +   +   A  +    
Sbjct: 56  SQLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDR 115

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGL-----------SGMCDTILYDLNLWISRPFL 170
           I T H           R  R   + G  +           S M   +  +    +  P  
Sbjct: 116 IATGHYA---------RIARLS-DSGRFVVKRALDARKDQSYMLSLLSQEQLARLVLPLG 165

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
              + ++R       +   E   + D+ F     R F+R
Sbjct: 166 AMTKAEVRVIAADLGLVVAEKAESQDNCFIEGDYRPFLR 204


>gi|307150920|ref|YP_003886304.1| Queuosine synthesis-like protein [Cyanothece sp. PCC 7822]
 gi|306981148|gb|ADN13029.1| Queuosine synthesis-like protein [Cyanothece sp. PCC 7822]
          Length = 272

 Score = 40.7 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 56/199 (28%), Gaps = 40/199 (20%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    +E ++   + +      L+A SGG DS  +    + VL DR+   +  +A+    
Sbjct: 1   MVTQFLEQLKNIFKEMDRA---LIAYSGGVDSTLVAKIAYDVLGDRA---LAVTAV---- 50

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEH 113
               +   +E+       + + IAH ++     +               +   +  +   
Sbjct: 51  --SPSLLPEELEDAKIQAASIGIAHELIQTHEMENPNYTSNPVNRCYFCKSELHDTLKPL 108

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           A       I+     DD                   L      I       +  P     
Sbjct: 109 ALGRGYPYIVDGVNGDD-------------------LQDYRPGIRAAQERGVRSPLAEAG 149

Query: 172 CRREDIRSFLLQRNISWCE 190
             +  +R       + W +
Sbjct: 150 ITKAQVRQLSQYLGLPWWD 168


>gi|163841352|ref|YP_001625757.1| sulfate adenylyltransferase subunit 2 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954828|gb|ABY24343.1| sulfate adenylyltransferase subunit 2 [Renibacterium salmoninarum
           ATCC 33209]
          Length = 301

 Score = 40.7 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R  V     PA +    SGG DS+ +L            G++ F  + VD  H 
Sbjct: 16  ESIHILREVVAEFERPAML---FSGGKDSVVMLHLATKAF---WPGRVPFPVLHVDTGHN 69

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
             E      R V     RL +   V S +    +  L   A
Sbjct: 70  FPEVLDFRDRTV----ERLGLRLVVGSVQEYIDRGELAERA 106


>gi|50412876|ref|XP_457174.1| DEHA2B04884p [Debaryomyces hansenii CBS767]
 gi|49652839|emb|CAG85169.1| DEHA2B04884p [Debaryomyces hansenii]
          Length = 654

 Score = 40.7 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 27/183 (14%)

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQL 132
           V +VC RL +      W+  + +        +    +I   A  +NAT           +
Sbjct: 125 VENVCGRLGLTCLAYLWQRDQLELMGEMCNNQLDARIIKVAAIGLNAT------HLGKSI 178

Query: 133 ETV---YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWC 189
           + +    ++  R Y     G  G  +TI+ D       PF + +R +I     +      
Sbjct: 179 QELYPYLIKLNRMYEVHICGEGGEFETIVLDA------PFFKHKRLEIIE--QE-----V 225

Query: 190 EDPSNTDDRFER--VRVRRFV---RDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYLTV 244
            D SN D  + R  V +R  V    D  L    L  ++F  +  ++ + +   I   +  
Sbjct: 226 VDHSNDDVSYLRLKVELREKVDGSSDTTLAPPALLSEQFATIFEELADEIEDEIKDKIKD 285

Query: 245 HMR 247
             +
Sbjct: 286 DEQ 288


>gi|311031504|ref|ZP_07709594.1| NAD+ synthetase [Bacillus sp. m3-13]
          Length = 246

 Score = 40.7 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 56/208 (26%), Gaps = 54/208 (25%)

Query: 4   SPIESVRFFVRSLVYPAHI---LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
             I  +  +++  V  + +   +V VSGG DS  +   +     + S G I         
Sbjct: 3   EKIAKLVQWIQEKVKDSGLNGAIVGVSGGIDSAVVAHLIKRAFPEDSLGVIMPC------ 56

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVV---------------------SWKNSKPQTGLM 99
              ++   +  Y  +V     I+H+ +                      W     + G  
Sbjct: 57  ---KSDPKDEEYALEVIESCGISHTTIDLSETHTVLFSAMEKQLKEKGEWNEETSRLGDA 113

Query: 100 AAAREARYALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILY 159
                 R   +   A      ++ T    D+  E               G          
Sbjct: 114 NTRARLRMTTLYAVANNYGYLVVGT----DNAAEW------------HTGYFTKYG---- 153

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNIS 187
           D  + +  P +   + ++R       + 
Sbjct: 154 DGGVDLV-PLVNFTKGEVREMAKVLGVP 180


>gi|303235630|ref|ZP_07322237.1| NAD+ synthase [Prevotella disiens FB035-09AN]
 gi|302484077|gb|EFL47065.1| NAD+ synthase [Prevotella disiens FB035-09AN]
          Length = 651

 Score = 40.7 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 27/137 (19%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYV 73
           +    +++ +SGG DS   L+          F +    A+++          +       
Sbjct: 356 IKCKTVVLGISGGLDSTLALLVCIEAFDRLKFDRKDILAVTM-----PGFGTSDRTHNNA 410

Query: 74  SDVCSRLR--------IAHSVVSWKNSKPQTGLMAA------AREARYALISEHAKTINA 119
             +   L         +      +K+ +    +  A      ARE R  ++ + A   N 
Sbjct: 411 LLLMQELGVTMKEISIVPSVTQHFKDIEHDINVQDATYENAQARE-RTQILMDLANEYNG 469

Query: 120 TLIMTAHTFDDQLETVY 136
            +I T     D  E   
Sbjct: 470 LVIGTG----DLSELAL 482


>gi|299134868|ref|ZP_07028060.1| PP-loop domain protein [Afipia sp. 1NLS2]
 gi|298590678|gb|EFI50881.1| PP-loop domain protein [Afipia sp. 1NLS2]
          Length = 262

 Score = 40.7 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 22 ILVAVSGGSDSMGLLIALHSV 42
          I +AVSGG DSM L    H  
Sbjct: 20 IAIAVSGGVDSMVLAYVAHRF 40


>gi|167814354|ref|ZP_02446034.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 91]
          Length = 510

 Score = 40.7 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLRLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|148243194|ref|YP_001228351.1| PP family ATPase [Synechococcus sp. RCC307]
 gi|147851504|emb|CAK28998.1| ATP-utilizing enzyme of the PP-loop superfamily [Synechococcus sp.
           RCC307]
          Length = 284

 Score = 40.7 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 38/193 (19%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           ++ +R  +R       + VA SGG DS  +       L++ +      S     H LRE 
Sbjct: 17  LDRLRQRIRQF---GRVCVAYSGGVDSALVAAIAQEQLAEAALAVTGISPALAPH-LREE 72

Query: 66  AKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINA 119
           A+ + ++       L IAH  V++ +   P      T    A +   +  ++E ++    
Sbjct: 73  ARLQAQW-------LGIAHQEVLTAELQDPAYATNPTDRCYACKRELHRHLAEISRAAAG 125

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDI 177
             ++     DD                   L      I       +  P   L+  +  +
Sbjct: 126 AQVLDGVNHDD-------------------LGDHRPGIDAAREAGVCSPLAELQIDKASV 166

Query: 178 RSFLLQRNISWCE 190
           R F       W +
Sbjct: 167 RRFSKALGFPWWD 179


>gi|303232364|ref|ZP_07319057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae PB189-T1-4]
 gi|302481548|gb|EFL44615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Atopobium vaginae PB189-T1-4]
          Length = 392

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 38/138 (27%), Gaps = 41/138 (29%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------- 66
              A + + +SGG DS      L               A+     +R  +          
Sbjct: 10  PKGATVYLGMSGGVDSACSAALLKEW-------GYTVHAVY----MRNWSRDLPGFTCRW 58

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTG------LMAAAR------------EARYA 108
            D++     VC  L +   V  W   +          + A AR              ++ 
Sbjct: 59  ADDLADAERVCVTLGLTLDV--WDCEQEYKSTVVDYLIDAYARGYTPNPDVMCNQTIKFG 116

Query: 109 LISEHAKTINATLIMTAH 126
             +E A    A  I T H
Sbjct: 117 TFAEKAFAHGADFIATGH 134


>gi|158521607|ref|YP_001529477.1| hypothetical protein Dole_1596 [Desulfococcus oleovorans Hxd3]
 gi|158510433|gb|ABW67400.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3]
          Length = 265

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 7  ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
          E  +     L   A + VA SGG+DS  LL   + VL DR+        + 
Sbjct: 5  EKKQQLAALLKDHAPLGVAFSGGADSAFLLAMANHVLQDRAVALTSVGPMH 55


>gi|332674135|gb|AEE70952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 83]
          Length = 353

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 13  KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 61  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 120

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 121 CEKIATGH 128


>gi|317181057|dbj|BAJ58843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F32]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|317178074|dbj|BAJ55863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori F16]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCTLCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|308183444|ref|YP_003927571.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4]
 gi|308065629|gb|ADO07521.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|308062619|gb|ADO04507.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Cuz20]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|308185086|ref|YP_003929219.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180]
 gi|308061006|gb|ADO02902.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|315587224|gb|ADU41605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 35A]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|297380515|gb|ADI35402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori v225d]
 gi|308064111|gb|ADO05998.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Sat464]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|261840049|gb|ACX99814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori 52]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|217033651|ref|ZP_03439079.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10]
 gi|216943997|gb|EEC23431.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|205822484|sp|Q1CRS3|MNMA_HELPH RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|188528124|ref|YP_001910811.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Shi470]
 gi|229486342|sp|B2UV99|MNMA_HELPS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|188144364|gb|ACD48781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori Shi470]
          Length = 342

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|108563707|ref|YP_628023.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori HPAG1]
 gi|107837480|gb|ABF85349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori HPAG1]
          Length = 353

 Score = 40.7 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 13  KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 60

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 61  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLG 120

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 121 CEKIATGH 128


>gi|329894882|ref|ZP_08270681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC3088]
 gi|328922611|gb|EGG29946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma
           proteobacterium IMCC3088]
          Length = 361

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 54/208 (25%), Gaps = 43/208 (20%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           +     ++V +SGG DS    + L     D     +K               D+  Y + 
Sbjct: 1   MNPKQKVIVGLSGGVDSSVAALCLIEQGFDVEALFMKNW----------DEDDDTEYCTA 50

Query: 76  V---------CSRLRIAHSVVSWKNSKPQTGLM---AAAREAR-------------YALI 110
           +          + L I     ++             A  R  R             +   
Sbjct: 51  MQDFADASAVAAALGIVLHGANFAREYWDRVFEYFLAEYRAGRTPNPDILCNKEIKFKAF 110

Query: 111 SEHAKTINATLIMTAH---TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
            ++A  + A  I T H   T  D         Q+           +       L   +  
Sbjct: 111 LDYALNLGADFIATGHYARTGLDNA--GLTTLQKGADPNKDQSYFLHQVPHQALAKTLF- 167

Query: 168 PFLRCRREDIRSFLLQRNISWCE--DPS 193
           P     + ++R       ++  +  D +
Sbjct: 168 PLGDMHKTEVRERAKAAGLATFDKKDST 195


>gi|325117759|emb|CBZ53310.1| hypothetical protein NCLIV_030970 [Neospora caninum Liverpool]
          Length = 540

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKI 51
             + +++    ++ +V  AH+L A+SGG DS      +H  + DR  G +
Sbjct: 247 MKNFLQAEIRKIQDIVGDAHVLGALSGGVDSTVAAALVHKAIGDRFHGVL 296


>gi|319957080|ref|YP_004168343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitratifractor salsuginis DSM 16511]
 gi|319419484|gb|ADV46594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Nitratifractor salsuginis DSM 16511]
          Length = 340

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 60/194 (30%), Gaps = 41/194 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LV +SGG DS    + L     +     +K               +E  +  +    
Sbjct: 4   KKVLVGMSGGVDSTVAALLLQKEGYEVVGVYMKLH------------DNEAYHRENYAKA 51

Query: 80  ------LRIAHSVV----SWKNSKPQTGLMAAA------------REARYALISEHAKTI 117
                 L +    +     ++       +                R+ ++  + E A ++
Sbjct: 52  RRVGEYLGVEVHFLDISGDFRQEVYDYFVEEYRTGRTPNPCVVCNRQIKFGRMLEFADSL 111

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               + T H        +YM   R   ++   L+ +   ++      +  P     +E++
Sbjct: 112 GIEKVATGHYVRSDGRYIYMARDR-SKDQSYFLAQVRKEVIPR----LLFPLGEWLKEEV 166

Query: 178 RSFLLQRNISWCED 191
           +++  +  I   +D
Sbjct: 167 KAYAAE--IPVLQD 178


>gi|262305997|gb|ACY45591.1| gln amidotransferase [Acanthocyclops vernalis]
          Length = 197

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSR 79
            +L+ +SGG DS        + L +R+ G  +  AI +D+   R+   D    V D  +R
Sbjct: 45  KVLMLLSGGVDSTV-----CAALMNRALGVDRVLAIHIDNGFMRKGESD---QVRDSLAR 96

Query: 80  LRIAHSVVSWKNS 92
           L +   V+   + 
Sbjct: 97  LGLDVKVIRASHE 109


>gi|255321785|ref|ZP_05362940.1| thiamine biosynthesis protein:ExsB [Campylobacter showae RM3277]
 gi|255301265|gb|EET80527.1| thiamine biosynthesis protein:ExsB [Campylobacter showae RM3277]
          Length = 328

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          LV  SGG DSM  +  L +         I+ +AI +D       K     +    +    
Sbjct: 4  LVLFSGGLDSMISIKLLTT-------QGIEVTAIHIDIGFSGDEKK-AEILRRRANEAGA 55

Query: 83 AHSVVSWKNS 92
             +V  +N 
Sbjct: 56 EFKIVDIRNE 65


>gi|156938193|ref|YP_001435989.1| phosphoadenosine phosphosulfate reductase [Ignicoccus hospitalis
           KIN4/I]
 gi|156567177|gb|ABU82582.1| phosphoadenosine phosphosulfate reductase [Ignicoccus hospitalis
           KIN4/I]
          Length = 389

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 16/88 (18%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD 68
           +R+    +     +++  SGG DS+     L  + +D +          V       +  
Sbjct: 81  LRWLSEKVPPNIKVVLNFSGGKDSVAAAKVLSDLGADVTLLYS-----HV-------SYL 128

Query: 69  E----VRYVSDVCSRLRIAHSVVSWKNS 92
           E    V +V  V +RL +   VV     
Sbjct: 129 ENPRNVDFVEKVANRLGVKLVVVEADRE 156


>gi|260905764|ref|ZP_05914086.1| sulfate adenylyltransferase subunit 2 [Brevibacterium linens BL2]
          Length = 314

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 20/121 (16%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRE---TAKDEVRY 72
           +   +L+  SGG DS+ +L             KI F  + VD  H   E      +   +
Sbjct: 41  FEKPVLL-FSGGKDSVTVLHLAAKAF---WPAKIPFGLLHVDTGHNFPEILKFRDETAAH 96

Query: 73  VSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYAL----ISEHAKTINATLIMTAHTF 128
                    I   V   ++      L   A   R  L    + +         +      
Sbjct: 97  -------YGIDLKVAKVQDYIDDGRLRERADGTRNTLQTQPLIDAIAEGGYDAVFGGARR 149

Query: 129 D 129
           D
Sbjct: 150 D 150


>gi|52841950|ref|YP_095749.1| GMP synthase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|81377336|sp|Q5ZUS0|GUAA_LEGPH RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52629061|gb|AAU27802.1| GMP synthetase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 525

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 22/187 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +L+ +SGG DS  +   LH  + +      +   + VD   LR     E  
Sbjct: 220 IREQVGTEKVLLGLSGGVDSSVVAALLHRAIGE------QLVCVFVDTGLLRLN---EAE 270

Query: 72  YVSD-VCSRLRIAHSVVSWKNS-----KPQTGLMAAA----REARYALISEHAKTINATL 121
            V       + I    V+ ++      K  T          R        E  K      
Sbjct: 271 QVLSMFGRHMGIRIIAVNAEDKFLTALKGVTCPEEKRKIIGRTFIEVFDEEAQKLTEIKW 330

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+    +  + A   +        +   LNL +  P     ++++R   
Sbjct: 331 LAQGTIYPDVIESA--ATSTNDAAVVIKSHHNVGGLPDTLNLKLLEPIRELFKDEVRQVG 388

Query: 182 LQRNISW 188
           L+  +  
Sbjct: 389 LELGLPH 395


>gi|126440112|ref|YP_001057771.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 668]
 gi|126219605|gb|ABN83111.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 668]
          Length = 510

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLQLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|295675780|ref|YP_003604304.1| Sulfate adenylyltransferase [Burkholderia sp. CCGE1002]
 gi|295435623|gb|ADG14793.1| Sulfate adenylyltransferase [Burkholderia sp. CCGE1002]
          Length = 320

 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 26  VSGGSDS-MGLLIALHSV-LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS + L +AL +  L      ++ F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLALALKAFGLGANRKTQLPFPLVHIDTGHNYDEVIDFRDRRAQEIGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K    +      +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVRLRRETDSRNAAQAVTLLETIEQYGYTAMIGGARRD 156


>gi|315645651|ref|ZP_07898775.1| exsB protein [Paenibacillus vortex V453]
 gi|315279129|gb|EFU42439.1| exsB protein [Paenibacillus vortex V453]
          Length = 225

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 62/208 (29%), Gaps = 56/208 (26%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
           L     ++V  SGG DS   L       ++          ++ D+  R   K E+   + 
Sbjct: 2   LKNEKAVVV-FSGGQDSTTCLFWTKERFAE-------VETVTFDYGQRH--KLEIECAAQ 51

Query: 76  VCSRLRIAHSVVS-------WKNSKPQTGLMAA-----------AREARY-ALISEHAKT 116
           +     +  +V+          N+  ++ +  A            R   + +  +  AK 
Sbjct: 52  IAKEQGVKQTVLDMSLLNQLAPNALTRSDIEIAEGDGLPTTFVDGRNLLFLSFAAVLAKG 111

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------IS 166
             A  ++T        ET              G     D+ +  LN+           I 
Sbjct: 112 AGAKHLITG-----VCET-----------DFSGYPDCRDSFIKSLNVTLNLAMDYPFVIH 155

Query: 167 RPFLRCRREDIRSFLLQRN-ISWCEDPS 193
            P +   + +      Q N + +  D +
Sbjct: 156 TPLMWLDKSETWELADQMNALEYVRDHT 183


>gi|301309251|ref|ZP_07215195.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
           20_3]
 gi|300832933|gb|EFK63559.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
           20_3]
          Length = 433

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-VCSR- 79
           + V+ SGG DS  LL      +   + G+ K     +D+ ++ +      YV     +  
Sbjct: 25  VYVSFSGGKDSGVLLNLCVDYIRRYAPGR-KLGVFHMDYEVQYS--QTTEYVEKVYAANS 81

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAR 103
             L I H  V +K     +      R
Sbjct: 82  DILDIYHCCVPFKVQTCTSMFQQYWR 107


>gi|295092425|emb|CBK78532.1| argininosuccinate synthase [Clostridium cf. saccharolyticum K10]
          Length = 409

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 56/202 (27%), Gaps = 39/202 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------------HCLRET 65
              +++A SGG D+         +   +     +     +D               L   
Sbjct: 2   KEKVILAYSGGLDTTA------IIPWLKEHFDYEVICCCIDCGQGEELTGLEERAKLSGA 55

Query: 66  AKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +K      V D C    +                 + AR      + E A+   A+ I  
Sbjct: 56  SKLYIEDIVDDFCDNYIVPCVQAGAVYENKYLLGTSMARPGIAKKLVEIARKEGASAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+     R +         L  +    + D+       +    R+D   +  
Sbjct: 116 GATGKGNDQI-----RFELGIKALAPDLKIIAPWRMTDV-------WTMQSRQDEIDYCK 163

Query: 183 QRNISWCED-PSNTDDRFERVR 203
              I    D P + D  + R R
Sbjct: 164 AHGI----DLPFSADSSYSRDR 181


>gi|262382231|ref|ZP_06075369.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297408|gb|EEY85338.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 429

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD-VCSR- 79
           + V+ SGG DS  LL      +   + G+ K     +D+ ++ +      YV     +  
Sbjct: 21  VYVSFSGGKDSGVLLNLCVDYIRRYAPGR-KLGVFHMDYEVQYS--QTTEYVEKVYAANS 77

Query: 80  --LRIAHSVVSWKNSKPQTGLMAAAR 103
             L I H  V +K     +      R
Sbjct: 78  DILDIYHCCVPFKVQTCTSMFQQYWR 103


>gi|86608667|ref|YP_477429.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp.
          JA-2-3B'a(2-13)]
 gi|123502696|sp|Q2JM78|MNMA_SYNJB RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|86557209|gb|ABD02166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 368

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 23/80 (28%)

Query: 21 HILVAVSGGSDSMGLLIALHS---------VLSDRSFGKIKFSAISVDHCLRETAKDEVR 71
           I+ A+SGG DS  +   L           +   R  G+     + VD            
Sbjct: 19 RIVAALSGGVDSSTVAALLQEQGYAVEGVTLWLMRGKGQCCTEGL-VD------------ 65

Query: 72 YVSDVCSRLRIAHSVVSWKN 91
            + VC +L I H VV  + 
Sbjct: 66 -AAAVCEQLGIPHHVVDSRE 84


>gi|220929786|ref|YP_002506695.1| hypothetical protein Ccel_2382 [Clostridium cellulolyticum H10]
 gi|220000114|gb|ACL76715.1| hypothetical protein Ccel_2382 [Clostridium cellulolyticum H10]
          Length = 368

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 14  RSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV 73
           + L     +LV +SGG DS        ++++     K++      DH   +    +   V
Sbjct: 57  KGLRGKYDVLVPLSGGVDSSV------ALINIVEKFKLRPLVFHNDHGYEDETATD--NV 108

Query: 74  SDVCSRLRI 82
             +C  L +
Sbjct: 109 RKLCRELNV 117


>gi|85059063|ref|YP_454765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sodalis glossinidius str. 'morsitans']
 gi|123519587|sp|Q2NU15|MNMA_SODGM RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|84779583|dbj|BAE74360.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Sodalis glossinidius str. 'morsitans']
          Length = 369

 Score = 40.3 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 31/133 (23%), Gaps = 36/133 (27%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++V +SGG DS      L           +K               D   Y       
Sbjct: 7   KKVIVGMSGGVDSSVSAWLLQQQGYRVEGLFMKNW----------EEDDNEEYCTAASDL 56

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-----------------YALISEH 113
                VC  L IA   V++              E +                  A +   
Sbjct: 57  ADARAVCDTLGIALHTVNFAAEYWDNVFAHFLAEYQVGRTPNPDILCNKEIKFKAFLEFA 116

Query: 114 AKTINATLIMTAH 126
              + A  I T H
Sbjct: 117 DDDLGADYIATGH 129


>gi|320355316|ref|YP_004196655.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123818|gb|ADW19364.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Desulfobulbus propionicus DSM 2032]
          Length = 350

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 33/187 (17%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEV--RYVSDVCSR 79
           + VA+SGG DS        S+L ++         +     L   A  EV  + V +V  R
Sbjct: 6   VGVAMSGGVDST----MAASLLQEQGHD------VHGFFMLLPLANLEVQRQRVREVADR 55

Query: 80  LRIAHSVVSWKNSKPQTGLMAAAREARY----------------ALISEHAKTINATLIM 123
           L I  + V  + S  +  +    R  R                  L+++  +  +   I 
Sbjct: 56  LSIPLTEVDLRQSFAEQVIGYFNRSYRAGLTPNPCIHCNRSVKFGLLADTMRHQDLERIA 115

Query: 124 TAHTFDDQLETVYMR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           T H    ++++V  R    R           +       +N  +  P     ++ + +  
Sbjct: 116 TGHYA--RVQSVGDRCFVARGSDRTKDQSYFLARLAADQVNTLLF-PLGDWTKQQVYARA 172

Query: 182 LQRNISW 188
                 +
Sbjct: 173 AALGFHF 179


>gi|307718690|ref|YP_003874222.1| GMP synthase [Spirochaeta thermophila DSM 6192]
 gi|306532415|gb|ADN01949.1| GMP synthase [Spirochaeta thermophila DSM 6192]
          Length = 517

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S +E V+  +R+ V    +L+ +SGG DS  +   L      ++F   +   + +D  L 
Sbjct: 198 SYLEDVQGLLRTQVGDDPLLLLISGGVDSTVVAALLL-----KTFPPEQVHLLYIDTGLM 252

Query: 63  RETAKDEVR 71
           R+   +EV 
Sbjct: 253 RKNETEEVE 261


>gi|189485660|ref|YP_001956601.1| hypothetical protein TGRD_657 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287619|dbj|BAG14140.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 278

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 42/191 (21%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E ++ ++  L    +++VA SGG+DS  LL   H VL +      K  A++        +
Sbjct: 8   EMLKEYISDL---DNLIVAFSGGTDSTFLLKTAHGVLGN------KVIAVT------AKS 52

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKT 116
               + E+   +  C +  I   +   +       S+  T      ++  +  I   AK 
Sbjct: 53  CSFPQRELNETTAFCEKENIRQIICDVEELNIKGFSRNPTNRCYLCKKELFVKIWSVAKD 112

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                +  A   DD          RDY      +S                  ++  +++
Sbjct: 113 NGIYNVSEASNIDDD---------RDYRPGLKAVSEYSVKSPLRH--------VKLTKDE 155

Query: 177 IRSFLLQRNIS 187
           IRS   +  + 
Sbjct: 156 IRSLSKKLGLP 166


>gi|170760165|ref|YP_001786978.1| exsB protein [Clostridium botulinum A3 str. Loch Maree]
 gi|254764325|sp|B1L1S2|QUEC_CLOBM RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|169407154|gb|ACA55565.1| exsB protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 219

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 18/71 (25%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD----HCLRETAKDEVRYVSDVC 77
          I+V  SGG DS   L        +         A+S D    H L      E+    D+C
Sbjct: 7  IVV-FSGGQDSTTCLFWAKKKYEE-------VIAVSFDYNQKHKL------ELDCAKDIC 52

Query: 78 SRLRIAHSVVS 88
           +  + H ++ 
Sbjct: 53 KKYNVEHHILD 63


>gi|124023980|ref|YP_001018287.1| ATP-utilizing enzymes of the PP-loop superfamily protein
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964266|gb|ABM79022.1| ATP-utilizing enzymes of the PP-loop superfamily protein
           [Prochlorococcus marinus str. MIT 9303]
          Length = 279

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 51/193 (26%), Gaps = 37/193 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
             ++   + L     + VA SGG DS  L+ A+      R     +  A++    +    
Sbjct: 14  AQLQMLRKRLASFGRVCVAYSGGVDS-ALVAAIA-----REQLGPQAFAVT---GVSPAL 64

Query: 67  KDE-VRYVSDVCSRLRIAHS---VVSWKNSKPQTGLMA---AAREARYALISEHAKTINA 119
             E +       + L I H         +    +       A +   +  +   AK+   
Sbjct: 65  APELLDEARQQAAWLEIRHQECMTKELDDPAYSSNPTDRCFACKRELHRHLGPIAKSAGG 124

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDI 177
             ++     DD  E                       I       +  P   L   +  +
Sbjct: 125 AQVVDGVNHDDLGE-------------------HRPGIEAGRQAGVRSPLAELEIGKAGV 165

Query: 178 RSFLLQRNISWCE 190
           R         W +
Sbjct: 166 RQMSRALGFPWWD 178


>gi|332158265|ref|YP_004423544.1| hypothetical protein PNA2_0623 [Pyrococcus sp. NA2]
 gi|331033728|gb|AEC51540.1| hypothetical protein PNA2_0623 [Pyrococcus sp. NA2]
          Length = 239

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 12/70 (17%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCSRL 80
          +V  SGG DS   L       + R++   +   +++++  RE         +     + L
Sbjct: 5  VVLFSGGLDSTACLY-----WAKRNYD--EVIMLTINYGSREERVTNRVAEF---FSNEL 54

Query: 81 RIAHSVVSWK 90
           +   ++   
Sbjct: 55 NVPLKIIRVD 64


>gi|315645293|ref|ZP_07898418.1| possible aluminum resistance protein [Paenibacillus vortex V453]
 gi|315279335|gb|EFU42641.1| possible aluminum resistance protein [Paenibacillus vortex V453]
          Length = 223

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 46/189 (24%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L  A+            +  A++ ++  R     E+   + +   L
Sbjct: 9   VVV-FSGGQDSTTCLFWAMKQFD--------EVEAVTFNYGQRH--ALEIECANQIADEL 57

Query: 81  RIAH---------------------SVVSWKNSKPQTGLMAAAREARY-ALISEHAKTIN 118
            +                        +V      P T +    R   + +  +  AK + 
Sbjct: 58  GVKWTLLDMSLLGQLTQNALTRDDVEIVHNDGEFPSTFVE--GRNHLFLSFAAVFAKGVG 115

Query: 119 ATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           A  I+T        ET +      RD   K + ++        D N  I  P +   + +
Sbjct: 116 ARHIVTG-----VCETDFSGYPDCRDDFVKSLNVTLNLAM---DHNFIIHTPLMWINKAE 167

Query: 177 IRSFLLQRN 185
                 Q  
Sbjct: 168 TWEMADQLG 176


>gi|312139149|ref|YP_004006485.1| sulfate adenylyltransferase subunit 2 cysd [Rhodococcus equi 103S]
 gi|311888488|emb|CBH47800.1| sulfate adenylyltransferase subunit 2 CysD [Rhodococcus equi 103S]
          Length = 308

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLR 63
           E+V  F   +  +   +L+  SGG DS+ +L              + F  + VD  H   
Sbjct: 21  EAVHIFREVAATFERPVLL-FSGGKDSVVMLHVAAKAF---WPAPLPFPVMHVDTGHNF- 75

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTI 117
               + + +      RL +   V S ++         +TG  A+    +   +    +  
Sbjct: 76  ---DEVIEFRDRTVERLGLRLVVASVEDDIAAGRVVDETGPRASRNRLQTHSLLRGIREN 132

Query: 118 NATLIMTAHTFD 129
               +      D
Sbjct: 133 KFDAVFGGARRD 144


>gi|261880130|ref|ZP_06006557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bergensis DSM 17361]
 gi|270333185|gb|EFA43971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella bergensis DSM 17361]
          Length = 384

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 35/194 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC------LRETAKDEV 70
           +    I V +SGG DS  ++  L S         I+                   +++++
Sbjct: 6   LKDKRIAVLLSGGVDSSVVVYELASHGLHPDCFYIRI-------GPEEKEEWDCNSEEDM 58

Query: 71  RYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLM-----AAAREARYALISEHA 114
              + V  R      VV            +   K ++G          R  ++    E A
Sbjct: 59  EMATAVAKRFGCKLQVVDCHQEYWSQVTRYTMEKVRSGFTPNPDVMCNRLIKFGAFDEKA 118

Query: 115 KTINATLIMTAHTFDDQLETVYMR--SQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
              +  LI T H    Q E +  R                +     + L   I  P    
Sbjct: 119 -GHDYDLIATGHYA--QTEWIDGRKWLTTSPDPVKDQTDFLAQIEGWQLKKAIF-PIGHY 174

Query: 173 RREDIRSFLLQRNI 186
            + ++R    + ++
Sbjct: 175 EKNEVREIAEREHL 188


>gi|239907289|ref|YP_002954030.1| argininosuccinate synthase [Desulfovibrio magneticus RS-1]
 gi|239797155|dbj|BAH76144.1| argininosuccinate synthase [Desulfovibrio magneticus RS-1]
          Length = 397

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 105/345 (30%), Gaps = 52/345 (15%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-DEVRYVSDVC 77
             +++A SGG D S+ L          +     +   ++ D    E     E + ++   
Sbjct: 5   KKVVLAYSGGLDTSVIL-------KWIKKTYNCEVITVTCDLGQEEELDGLEEKALTTGA 57

Query: 78  SRLRIAHSVVSWKNSKPQTGLMAAA-REARYALISEHAKTINATLI----------MTAH 126
           ++  I      +        L A A  E RY L +  A+ + A  +            AH
Sbjct: 58  TKAYIDDLREEFAKDFIFPMLRAGAIYEGRYLLGTSIARPLIAKRLVDVARAEGAQAVAH 117

Query: 127 TF----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
                 +DQ+     R +         L  +     +D             R D+ +F  
Sbjct: 118 GATGKGNDQV-----RFELTTGVLAPDLRTIAPWREWD----------FASRTDLLNFAK 162

Query: 183 QRNISWCEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
              I    D   +D   +R      +  +      L+   + +           +     
Sbjct: 163 DNGIPVPSDKKGSDHSMDRN-----LMHLSFEGGELEDP-WNEPSADTYLLTVPVEKAPD 216

Query: 243 TVHMRSIIAISQDILNIDSTLLF-YLLRVSAAICGGQISLPGYRSMERVMLFLKS----G 297
              + +I     D + ID   L    L       GG+  +     +E   + +KS     
Sbjct: 217 VADVVTIDFEHGDPVAIDGEKLSPAALIKKLNTLGGKHGVGRIDMVENRFVGMKSRGVYE 276

Query: 298 KRGCVSIGRVVIDRRANFLWITRAVRNLPTLILYPEETTVWDGRY 342
             GC  +   +  R    + + R V +L   ++      V++G +
Sbjct: 277 TPGCTILH--IARRDLEGICLDREVMHLRDSLIPRYAEMVYNGFW 319


>gi|220933802|ref|YP_002512701.1| phosphoadenosine phosphosulfate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995112|gb|ACL71714.1| phosphoadenosine phosphosulfate reductase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 378

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 16/92 (17%)

Query: 16  LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIK-FSAI----------SVDHCLRE 64
           L      +VA SGG DS  +L  ++ VL +     IK    I           V++    
Sbjct: 27  LADGRPWIVAYSGGKDSTLVLHLVYDVLVELGKHAIKPVYVISSDTQVEAPNIVNY---- 82

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT 96
             +D +  V     R  +       + + P+T
Sbjct: 83  -VRDVLTAVQKDAERRNLPLICEMVRPAVPET 113


>gi|213850128|ref|ZP_03381026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Salmonella enterica subsp. enterica serovar Typhi str.
          M223]
          Length = 116

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 19/84 (22%)

Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
           P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 4  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74 -----SDVCSRLRIAHSVVSWKNS 92
                 VC +L I    V++   
Sbjct: 54 DLADAQAVCDKLGIELHTVNFAAE 77


>gi|219850958|ref|YP_002465390.1| exsB protein [Methanosphaerula palustris E1-9c]
 gi|254764360|sp|B8GJL3|QUEC_METPE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|219545217|gb|ACL15667.1| exsB protein [Methanosphaerula palustris E1-9c]
          Length = 221

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 8/55 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          +SGG DS  L      +            A+ +++  R   K E++  + +   L
Sbjct: 7  LSGGMDSSTLAYVAKDM-------GYHIHALHLNYGQRTE-KKELQSATAIARSL 53


>gi|126661864|ref|ZP_01732863.1| GMP synthetase (glutamine-hydrolyzing) [Flavobacteria bacterium
           BAL38]
 gi|126625243|gb|EAZ95932.1| GMP synthetase (glutamine-hydrolyzing) [Flavobacteria bacterium
           BAL38]
          Length = 510

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E V   +++ +    +++ +SGG DS    + L+  + +          I V++ L
Sbjct: 200 VEEVVAEMKAKIGNDKVVLGLSGGVDSTVAAVLLNKAIGE------NLYCIFVNNGL 250


>gi|17541564|ref|NP_502296.1| hypothetical protein M18.3 [Caenorhabditis elegans]
 gi|3878705|emb|CAA92825.1| C. elegans protein M18.3, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 475

 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +F   I++ +  +++  + +H+ V +SGG DS  +   +HS + +     ++   I+V  
Sbjct: 181 LFQKVIDATKILLKNY-HESHVAVCLSGGVDSTFVAHVVHSSVPE----NMQIDLINVAF 235

Query: 61  CLRE 64
              E
Sbjct: 236 GNSE 239


>gi|16082373|ref|NP_394850.1| hypothetical protein Ta1396 [Thermoplasma acidophilum DSM 1728]
 gi|10640738|emb|CAC12516.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 413

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 11 FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
           F +++     +  A SGG DS  L I  +  L  R   +   + + 
Sbjct: 23 LFNKTIRNGEKVTFAFSGGKDSTTLAILFYEWLKIRHDIECTITLLH 69


>gi|53718325|ref|YP_107311.1| putative asparagine synthetase B [Burkholderia pseudomallei K96243]
 gi|76811014|ref|YP_332313.1| asparagine synthase [Burkholderia pseudomallei 1710b]
 gi|126453540|ref|YP_001065015.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1106a]
 gi|134279525|ref|ZP_01766237.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 305]
 gi|167718192|ref|ZP_02401428.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei DM98]
 gi|167822831|ref|ZP_02454302.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 9]
 gi|167844405|ref|ZP_02469913.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei B7210]
 gi|217419807|ref|ZP_03451313.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 576]
 gi|226196677|ref|ZP_03792257.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei Pakistan 9]
 gi|242317405|ref|ZP_04816421.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1106b]
 gi|254187663|ref|ZP_04894175.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254258801|ref|ZP_04949855.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1710a]
 gi|52208739|emb|CAH34675.1| putative asparagine synthetase B [glutamine-hydrolyzing]
           [Burkholderia pseudomallei K96243]
 gi|76580467|gb|ABA49942.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1710b]
 gi|126227182|gb|ABN90722.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1106a]
 gi|134248725|gb|EBA48807.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 305]
 gi|157935343|gb|EDO91013.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei Pasteur 52237]
 gi|217397111|gb|EEC37127.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 576]
 gi|225931208|gb|EEH27215.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei Pakistan 9]
 gi|242140644|gb|EES27046.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1106b]
 gi|254217490|gb|EET06874.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 1710a]
          Length = 510

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLQLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|156093385|ref|XP_001612732.1| tRNA methyl transferase [Plasmodium vivax SaI-1]
 gi|148801606|gb|EDL43005.1| tRNA methyl transferase, putative [Plasmodium vivax]
          Length = 837

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 12/72 (16%)

Query: 24  VA--VSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           VA  +SGG DS M L      +L  + F    F  +   H  ++ +K +++YV  +CS+ 
Sbjct: 237 VAHMLSGGVDSLMAL-----RLLERKKFYVHNFY-LHFAH--QDCSKSDLQYVKQICSKR 288

Query: 81  RIAHSVVSWKNS 92
           +    +V+    
Sbjct: 289 K-NLFIVNVNEE 299


>gi|73669809|ref|YP_305824.1| NAD synthetase [Methanosarcina barkeri str. Fusaro]
 gi|72396971|gb|AAZ71244.1| NH(3)-dependent NAD(+) synthetase [Methanosarcina barkeri str.
           Fusaro]
          Length = 265

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 31/146 (21%)

Query: 1   MFLSPIE-SVRFFVRSLVYPAHI---LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI 56
           M L   +  +  F+R+    A +   +V +SGG DS     AL + L+ ++ GK K   I
Sbjct: 11  MNLEIAQNRIIDFIRNETRKAGVNGAVVGISGGIDS-----ALAATLTVKALGKDKVLGI 65

Query: 57  SVDHCLRETA----KDEVRYVSDVCSRLRIAHSVVS-------WKNSKPQT------GLM 99
            +       +     ++ +    +   L I    +        +  S P++       + 
Sbjct: 66  HM-----PESGLTPSEDSKDAKTLADWLGIEFQTIDISGIISAFVASVPESESTDRLSMG 120

Query: 100 AAAREARYALISEHAKTINATLIMTA 125
                 R +L+  HA  +N  +I T 
Sbjct: 121 NLKARIRMSLLYFHANRMNRMVIGTG 146


>gi|296161025|ref|ZP_06843836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. Ch1-1]
 gi|295888724|gb|EFG68531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia sp. Ch1-1]
          Length = 381

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 36/134 (26%), Gaps = 35/134 (26%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---S 74
               ++V +SGG DS      L     D     +K               D+  Y     
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 75  DV------CSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
           D          + I    V++                 A R          E ++    +
Sbjct: 52  DWIDVVSVADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAH 126
           HA ++ A  I T H
Sbjct: 112 HAISLGAETIATGH 125


>gi|260777128|ref|ZP_05886022.1| NAD synthetase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606794|gb|EEX33068.1| NAD synthetase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 275

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 11/100 (11%)

Query: 12  FVRSLVYPAH---ILVAVSGGSDSMG---LLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           F++  +  A    +++ +SGG DS     L     + L++ + G  +F A+ + +  ++ 
Sbjct: 27  FIKRKLQEARCKALVLGISGGVDSTTCGRLAQLAVNELNEETDGGYQFIAVRLPYGEQKD 86

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREA 105
            +DE +               VS        GL AA+REA
Sbjct: 87  -EDEAQIALQFIQ----PTHSVSVNIKAGVDGLHAASREA 121


>gi|289803739|ref|ZP_06534368.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 109

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 19/84 (22%)

Query: 18 YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---- 73
           P  ++V +SGG DS      L           +K               D   Y     
Sbjct: 4  SPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAA 53

Query: 74 -----SDVCSRLRIAHSVVSWKNS 92
                 VC +L I    V++   
Sbjct: 54 DLADAQAVCDKLGIELHTVNFAAE 77


>gi|91215963|ref|ZP_01252932.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychroflexus torquis ATCC 700755]
 gi|91185940|gb|EAS72314.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychroflexus torquis ATCC 700755]
          Length = 509

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++  +    +++ +SGG DS      LH  +            I V++ L
Sbjct: 207 LKEKIGDDKVILGLSGGVDSTVAATLLHKAIGK------NLHCIFVNNGL 250


>gi|56459688|ref|YP_154969.1| GMP synthase [Idiomarina loihiensis L2TR]
 gi|81362762|sp|Q5QWW5|GUAA_IDILO RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|56178698|gb|AAV81420.1| GMP synthase [Idiomarina loihiensis L2TR]
          Length = 525

 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  + +      + + + VD+  LR     E  
Sbjct: 221 IREQVGSDKVILGLSGGVDSSVTAMLLHRAIGE------QLTCVFVDNGLLRLN---EAE 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V +       +    +  ++            E +  +I          E  K      
Sbjct: 272 QVMEMFGDHYGLNILPIRAEDRFLDALAGENDPEKKRKIIGNTFIEIFDEEAGKLTEVDW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +  D+ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEDMKLGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|332759354|gb|EGJ89662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella flexneri 2747-71]
          Length = 357

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 30/126 (23%), Gaps = 36/126 (28%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---------SDVC 77
           SGG DS      L           +K               D   Y            VC
Sbjct: 2   SGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADLADAQAVC 51

Query: 78  SRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKTINAT 120
            +L I    V++             A  +  R               A +   A+ + A 
Sbjct: 52  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 111

Query: 121 LIMTAH 126
            I T H
Sbjct: 112 YIATGH 117


>gi|323172490|gb|EFZ58127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli LT-68]
 gi|323947563|gb|EGB43567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli H120]
          Length = 357

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 30/126 (23%), Gaps = 36/126 (28%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---------SDVC 77
           SGG DS      L           +K               D   Y            VC
Sbjct: 2   SGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADLADAQAVC 51

Query: 78  SRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKTINAT 120
            +L I    V++             A  +  R               A +   A+ + A 
Sbjct: 52  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 111

Query: 121 LIMTAH 126
            I T H
Sbjct: 112 YIATGH 117


>gi|323165641|gb|EFZ51428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Shigella sonnei 53G]
          Length = 357

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 30/126 (23%), Gaps = 36/126 (28%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---------SDVC 77
           SGG DS      L           +K               D   Y            VC
Sbjct: 2   SGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADLADAQAVC 51

Query: 78  SRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKTINAT 120
            +L I    V++             A  +  R               A +   A+ + A 
Sbjct: 52  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 111

Query: 121 LIMTAH 126
            I T H
Sbjct: 112 YIATGH 117


>gi|331662546|ref|ZP_08363469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA143]
 gi|331060968|gb|EGI32932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Escherichia coli TA143]
          Length = 357

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 30/126 (23%), Gaps = 36/126 (28%)

Query: 27  SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---------SDVC 77
           SGG DS      L           +K               D   Y            VC
Sbjct: 2   SGGVDSSVSAWLLQQQGYQVEGLFMKNW----------EEDDGEEYCTAAADLADAQAVC 51

Query: 78  SRLRIAHSVVSWKNSKPQTGLM---AAAREAR--------------YALISEHAKTINAT 120
            +L I    V++             A  +  R               A +   A+ + A 
Sbjct: 52  DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 111

Query: 121 LIMTAH 126
            I T H
Sbjct: 112 YIATGH 117


>gi|258545674|ref|ZP_05705908.1| sulfate adenylyltransferase, small subunit [Cardiobacterium hominis
           ATCC 15826]
 gi|258519081|gb|EEV87940.1| sulfate adenylyltransferase, small subunit [Cardiobacterium hominis
           ATCC 15826]
          Length = 308

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFG-KIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ LL               + F  + +D  H   E        V  + +RL +
Sbjct: 37  FSGGKDSVVLLALARKAFQVAGRDIPLPFPLLHIDTGHNYPEVIAFRDETVRQLRARLVV 96

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S             +R A  A+ + E  +      ++     D
Sbjct: 97  GHVEDSIARGTVVLRRETDSRNAAQAVTLLEAIEEHGFDALLGGARRD 144


>gi|311694941|gb|ADP97814.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [marine bacterium HP15]
          Length = 525

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS      LH  + D      + + + VD+ L
Sbjct: 221 IREQVGNDKVLLGLSGGVDSSVTAALLHRAIGD------QLTCVFVDNGL 264


>gi|289551433|ref|YP_003472337.1| Queuosine Biosynthesis QueC ATPase [Staphylococcus lugdunensis
          HKU09-01]
 gi|315658942|ref|ZP_07911809.1| transcription regulator ExsB [Staphylococcus lugdunensis M23590]
 gi|289180964|gb|ADC88209.1| Queuosine Biosynthesis QueC ATPase [Staphylococcus lugdunensis
          HKU09-01]
 gi|315496066|gb|EFU84394.1| transcription regulator ExsB [Staphylococcus lugdunensis M23590]
          Length = 223

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 16 LVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS 74
          L     I+V  SGG DS   L  A       + F +++   ++ ++  R   + EV    
Sbjct: 6  LNNNKAIVV-FSGGQDSTTCLFYA------KKHFDEVEL--VTFNYGQRHNTEIEVA--K 54

Query: 75 DVCSRLRIAHSVVS 88
           +     +AH ++ 
Sbjct: 55 SIAHEQGLAHHILD 68


>gi|317051375|ref|YP_004112491.1| exsB protein [Desulfurispirillum indicum S5]
 gi|316946459|gb|ADU65935.1| exsB protein [Desulfurispirillum indicum S5]
          Length = 216

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 55/204 (26%)

Query: 18  YPAHILVAVSGGSDSM-GLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
            P+ + + +SGG DS   LL  LH        G +   A+++ +  +   + E+   + +
Sbjct: 2   KPSAVAL-LSGGMDSTCALLKYLHD-------GGVVRHALTMAYG-QLAQEKEIAAAAAI 52

Query: 77  CSRLRIAHSVV--------------------SWKNSKPQTGLMAAAREA---RYALISEH 113
           C  L I H  V                    +   +  +    +A       R  L    
Sbjct: 53  CDHLGIPHETVELPFLARLSNSSLNRGTIPENIDINDTRQSEQSARSVWVPNRNGLFINI 112

Query: 114 ----AKTINATLIMT------AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL 163
               A+++    I+T      A TF D      M +        +              L
Sbjct: 113 AAVFAESMGCQHIITGFNVEEAQTFPDNSRDFLMAANGALHFSTL------------DTL 160

Query: 164 WISRPFLRCRREDIRSFLLQRNIS 187
           ++    +   +++I  +L++    
Sbjct: 161 FVVSGTIDMDKKEIAGYLMRNAFP 184


>gi|225575109|ref|ZP_03783719.1| hypothetical protein RUMHYD_03198 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037668|gb|EEG47914.1| hypothetical protein RUMHYD_03198 [Blautia hydrogenotrophica DSM
           10507]
          Length = 273

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 54/202 (26%), Gaps = 56/202 (27%)

Query: 10  RFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-------- 61
           R     L       +A SGG DS  LL A                    +HC        
Sbjct: 23  RSLYEYLQKSPPFALAFSGGVDSAYLLYAAMK-----------------NHCQLTAYFIK 65

Query: 62  --LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ------TGLMAAAREARYALISEH 113
              +   + +      +   L     V+S      +             ++A +  ++  
Sbjct: 66  TPFQPQFELDDAL--RLAEELSAPLKVLSLDILDREVIISNPADRCYFCKKALFTALTSQ 123

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LR 171
           AK    TL+       DQ             +   G+  + +       L +  P     
Sbjct: 124 AKRDGYTLVFDGTNASDQ------------TDDRPGMKALTE-------LQVLSPLRECG 164

Query: 172 CRREDIRSFLLQRNISWCEDPS 193
             ++ IR    +  +   + PS
Sbjct: 165 LTKQTIRQLSKEAGLFTYDKPS 186


>gi|167892919|ref|ZP_02480321.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 7894]
 gi|167917649|ref|ZP_02504740.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei BCC215]
          Length = 510

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLQLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|154249760|ref|YP_001410585.1| ExsB family protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153696|gb|ABS60928.1| ExsB family protein [Fervidobacterium nodosum Rt17-B1]
          Length = 358

 Score = 40.3 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 72/235 (30%), Gaps = 47/235 (20%)

Query: 1   MFLSPIESVRFFVRSLV--YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
           M +  IE +   ++++   Y    +VA SGG DS        ++L   + GK     + V
Sbjct: 1   MAIVTIEDILKDIKNVAEEYGKDFVVAFSGGMDSTA-----SALLCAEAIGKENIELVHV 55

Query: 59  DHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK------PQTGLMAAAREARYALISE 112
            +     +   +  VS+   +     + +  +  +      P   +     +        
Sbjct: 56  VYGPYTYSNS-LEIVSEFAEKFGFKITFLYNRGQEQIWKYGPSCNMCTKQIKM-----GT 109

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC 172
                N  +++T     D                     G     +++    +  P    
Sbjct: 110 VLSYANGRIVVTGSNSSD-------------------TWGQTGLRVFNS---MYAPLGDI 147

Query: 173 RREDIRSFLLQRNISWCEDPSNTDDRFERV--RVRRFVRDIDLHALYLKMKKFQD 225
            +++IR  L +  +          +   R   +++  ++ +   A + K     +
Sbjct: 148 GKDEIRKILDKYGVKIRR----IGEHALREGCKLKHLLKPMTNPAYHGKATAIAN 198


>gi|325970674|ref|YP_004246865.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta sp. Buddy]
 gi|324025912|gb|ADY12671.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta sp. Buddy]
          Length = 517

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R+ V    +L  +SGG DS    + +H  + D      +   + V++  LR+    E  
Sbjct: 213 IRTKVGDKQVLCGLSGGVDSAVAAVLIHKAIGD------QLVCVFVNNGLLRKG---EAE 263

Query: 72  YVSDVCS-----RLRIAHSVVSWKNSKPQTGLMAAARE-----ARYALISEHAKTINATL 121
            V  +       RL+ A++  ++ ++        A R+           SE  K    + 
Sbjct: 264 MVLKLFRDNYKIRLQYANAEEAFLSALAGVSEPEAKRKIIGKVFIDTFYSEARKAGEISF 323

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+   +S        +        +  DL   +  P     ++++R+  
Sbjct: 324 LAQGTLYPDVIES---KSPSGGPSATIKSHHNVGGLPEDLKWDLLEPLRELFKDEVRALG 380

Query: 182 LQRNIS 187
            +  + 
Sbjct: 381 RELGLP 386


>gi|325673546|ref|ZP_08153237.1| sulfate adenylyltransferase subunit 2 [Rhodococcus equi ATCC 33707]
 gi|325555567|gb|EGD25238.1| sulfate adenylyltransferase subunit 2 [Rhodococcus equi ATCC 33707]
          Length = 308

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 17/132 (12%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLR 63
           E+V  F   +  +   +L+  SGG DS+ +L              + F  + VD  H   
Sbjct: 21  EAVHIFREVAATFERPVLL-FSGGKDSVVMLHVAAKAF---WPAPLPFPVMHVDTGHNF- 75

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTI 117
               + + +      RL +   V S ++         +TG  A+    +   +    +  
Sbjct: 76  ---DEVIEFRDRTVERLGLRLVVASVEDDIAAGRVVDETGPRASRNRLQTHSLLRGIREN 132

Query: 118 NATLIMTAHTFD 129
               +      D
Sbjct: 133 KFDAVFGGARRD 144


>gi|270011194|gb|EFA07642.1| hypothetical protein TcasGA2_TC030543 [Tribolium castaneum]
          Length = 365

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 30/122 (24%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             ++V +SGG DS G+ +    +  ++ +                +A  + +  + VC +
Sbjct: 5   RKVVVGISGGVDSAGVFMQNWDIADEKGYC---------------SADADYKDAALVCDK 49

Query: 80  LRIAHSVVSW-KNSKPQTGLMAAA-------------REARYALISEHAK-TINATLIMT 124
           L I  + V++ K+   +  L+                R  ++    ++A+  + A  I T
Sbjct: 50  LDIKLTHVNFVKHYWNEVNLIKEYETGNTPNPDVLCNRNIKFNYFYKYARNELGADAIAT 109

Query: 125 AH 126
            H
Sbjct: 110 GH 111


>gi|302558906|ref|ZP_07311248.1| GMP synthase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
 gi|302476524|gb|EFL39617.1| GMP synthase domain-containing protein [Streptomyces griseoflavus
           Tu4000]
          Length = 260

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
           S IE     +R LV     +  +SGG DS     A+ + L  ++ G  + + + VDH 
Sbjct: 209 SVIEEQVTAIRELVGDKRAICGLSGGVDS-----AVAAALVQKAIGS-QLTCVYVDHG 260


>gi|254456598|ref|ZP_05070027.1| GMP synthetase [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083600|gb|EDZ61026.1| GMP synthetase [Candidatus Pelagibacter sp. HTCC7211]
          Length = 520

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 70/185 (37%), Gaps = 21/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VRS V    ++ A+SGG DS  +   L+  +        K   I V+   LR+   +E++
Sbjct: 216 VRSQVGSNKVICALSGGVDSSVVAQLLNKAIGK------KLFCIFVNTGLLRKN--EEIQ 267

Query: 72  YVSDVCSRLRIAHSVVSWKNSK-PQTGLMAAAREARY-------ALISEHAKTINATLIM 123
            V     RL++    V+ +     +   ++   + R         +   +AK I     +
Sbjct: 268 VVQTFKKRLKMNLIYVNAEKEFLKKLSNVSDPEKKRKIIGNLFIKIFERYAKKIKNVKFL 327

Query: 124 TAHTF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
              T   D +E+   +S        +        +   + L +  P     ++++R   L
Sbjct: 328 AQGTLYPDLIES---KSVTGSQTSKIKSHHNVGGLPKRMKLKLVEPLKFLFKDEVRKLGL 384

Query: 183 QRNIS 187
           + N++
Sbjct: 385 ELNLN 389


>gi|167901404|ref|ZP_02488609.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei NCTC 13177]
          Length = 510

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLQLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|294340108|emb|CAZ88479.1| putative NH(3)-dependent NAD(+) synthetase [Thiomonas sp. 3As]
          Length = 332

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 7   ESVR---FFVRSL--VYPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           E+VR   FF+ +L       +++ +SGG D S+   +A+ ++   R FG +         
Sbjct: 18  ETVRIADFFLHTLRGFNKRGVVLGLSGGVDSSVCAALAVRALGPQRVFGLLMPE------ 71

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINAT 120
             R+++ +       V  +L I  +V +   +    G      EA  A++  +       
Sbjct: 72  --RDSSDNSATLGGQVAQQLGIESTVENIAPALEAIGCYHWRDEAVRAVLPGYNAQWKIK 129

Query: 121 LIMTA 125
           L ++ 
Sbjct: 130 LAISG 134


>gi|260463747|ref|ZP_05811945.1| exsB protein [Mesorhizobium opportunistum WSM2075]
 gi|319785231|ref|YP_004144707.1| exsB protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|259030601|gb|EEW31879.1| exsB protein [Mesorhizobium opportunistum WSM2075]
 gi|317171119|gb|ADV14657.1| exsB protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 232

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           SGG DS+ L    H V ++     +    +S D+  R +   E+++ +    RL IAH 
Sbjct: 7  CSGGLDSVSLA---HKVAAEHELAGL----LSFDYGQRHS--KELKFATLCAQRLDIAHQ 57

Query: 86 VVSWKNSKPQ 95
          ++  +     
Sbjct: 58 IIDIRQIGRG 67


>gi|242077782|ref|XP_002448827.1| hypothetical protein SORBIDRAFT_06g033930 [Sorghum bicolor]
 gi|241940010|gb|EES13155.1| hypothetical protein SORBIDRAFT_06g033930 [Sorghum bicolor]
          Length = 545

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E ++    ++    H++ A+SGG DS      +H  + DR         + VD+ L
Sbjct: 226 EEIKTIQSTVGPDEHVICALSGGVDSTVAATLVHKAIGDR------LHCVFVDNGL 275


>gi|225849593|ref|YP_002729827.1| GMP synthase [Persephonella marina EX-H1]
 gi|225645120|gb|ACO03306.1| GMP synthase [Persephonella marina EX-H1]
          Length = 512

 Score = 40.3 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 70/185 (37%), Gaps = 22/185 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R +V     + A+SGG DS    + +H+ + D        + I VD+  LR+  +++V 
Sbjct: 209 IRKMVGDKKAICALSGGVDSSVAAVLVHNAIGD------NLTCIFVDNGLLRKGEREKVE 262

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY--------ALISEHAKTI-NATLI 122
                     I   VV  +    +        E +          +  E AK I +   +
Sbjct: 263 --KTFRDHFHIPLIVVDARERFLEALKGVTDPEQKRKIIGNLFIEIFEEEAKKIPDVEFL 320

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +    + D +E+V ++      +    + G+ +     +NL +  P     ++++R    
Sbjct: 321 VQGTLYPDVIESVSVKGPSAVIKTHHNVGGLPEK----MNLKLIEPLRELFKDEVRELGK 376

Query: 183 QRNIS 187
           +  + 
Sbjct: 377 ELGLP 381


>gi|315185780|gb|EFU19546.1| GMP synthase (glutamine-hydrolyzing) [Spirochaeta thermophila DSM
           6578]
          Length = 517

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
           S +E V+  +R+ V    +L+ +SGG DS  +   L      ++F   +   + +D  L 
Sbjct: 198 SYLEDVQGLLRTQVGDDPLLLLISGGVDSTVVAALLL-----KTFPPEQVHLLYIDTGLM 252

Query: 63  RETAKDEVR 71
           R+   +EV 
Sbjct: 253 RKNETEEVE 261


>gi|313668995|ref|YP_004049279.1| queuosine biosynthesis protein QueC [Neisseria lactamica ST-640]
 gi|313006457|emb|CBN87920.1| queuosine biosynthesis protein QueC (ec 3.5.-.-) [Neisseria
           lactamica 020-06]
          Length = 219

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 55/195 (28%), Gaps = 54/195 (27%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS   L     + + +++G+    AI+  +  R     E+   + +   L +  +
Sbjct: 10  FSGGQDSTTCL-----IQAVQTYGRENVRAITFQYGQRH--AVELERAAWIAQDLGVPQT 62

Query: 86  VVSWKNSK---------PQTGLMAA----------AREARYALISEH-AKTINATLIMTA 125
           +V     K             +  A           R A + L +   AK      I+  
Sbjct: 63  LVDLNLMKTITHNALMDEAASIETAGNGVPNTFVDGRNALFLLYAAIYAKGQGIRHIIAG 122

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLRCRRE 175
                  ET              G     D  +  +N+           I  P +   + 
Sbjct: 123 -----VCET-----------DFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPLMYLTKA 166

Query: 176 DIRSFLLQRN-ISWC 189
              +   +   + + 
Sbjct: 167 QTWALADEMGALDYI 181


>gi|309812162|ref|ZP_07705920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dermacoccus sp. Ellin185]
 gi|308433849|gb|EFP57723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Dermacoccus sp. Ellin185]
          Length = 384

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 27/129 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF--SAISVDHCLRETAK-----DEVRYV 73
            ++ A+SGG DS      +     D     +    SA +    LRE+A+     ++    
Sbjct: 2   RVVAAMSGGVDSAVAASRMLEAGHDVVGVHLALSQSAAT----LRESARGCCTIEDAGDA 57

Query: 74  SDVCSRLRIAHSV------VSWKNSKPQTGLMAAAR----------EARYALISEHAKTI 117
             V  RL I   V            +       A R          + ++A + + A  +
Sbjct: 58  RRVADRLGIPFYVWDMAERFKADVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 117

Query: 118 NATLIMTAH 126
               + T H
Sbjct: 118 GFDAVATGH 126


>gi|194014818|ref|ZP_03053435.1| ExsB protein [Bacillus pumilus ATCC 7061]
 gi|194013844|gb|EDW23409.1| ExsB protein [Bacillus pumilus ATCC 7061]
          Length = 218

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   LL AL            +   ++  +  R    +E+     +  +L
Sbjct: 7  VVV-FSGGQDSTTCLLWALQQFE--------EVETVTFHYNQRHQ--EEIDVAKRIADKL 55

Query: 81 RIAHSVVS 88
           + + ++ 
Sbjct: 56 GVKNHLLD 63


>gi|184156205|ref|YP_001844545.1| hypothetical protein LAF_1729 [Lactobacillus fermentum IFO 3956]
 gi|183227549|dbj|BAG28065.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 275

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 21/120 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRYVS--DV 76
            +LVA SGG DS  +L A     + ++ GK    A+         +    +  Y    D+
Sbjct: 18  KVLVAFSGGIDSTVVLDA-----ALKTLGKENVLAVV------ANSDLFTDEEYTKAMDL 66

Query: 77  CSRLR--IAHSVVSWKNSKPQTGLMAAAR----EARYALISEHAKTINATLIMTAHTFDD 130
              +   +  + + +  +       A++     +  Y  ++E     N  +++     DD
Sbjct: 67  AQEMGATVLGTTLDYLANDDIKNNRASSWYWMKKMFYQKMNELKDNSNCDVVLDGMIMDD 126


>gi|167737225|ref|ZP_02409999.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 14]
          Length = 370

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLRLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|157692044|ref|YP_001486506.1| transcriptional regulator [Bacillus pumilus SAFR-032]
 gi|189038896|sp|A8FCH9|QUEC_BACP2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|157680802|gb|ABV61946.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
          Length = 218

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   LL AL            +   ++  +  R    +E+     +  +L
Sbjct: 7  VVV-FSGGQDSTTCLLWALQQFE--------EVETVTFHYNQRHQ--EEIDVAKRIADKL 55

Query: 81 RIAHSVVS 88
           + + ++ 
Sbjct: 56 GVKNHLLD 63


>gi|167909635|ref|ZP_02496726.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 112]
 gi|254196388|ref|ZP_04902812.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei S13]
 gi|254296226|ref|ZP_04963683.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 406e]
 gi|157805735|gb|EDO82905.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei 406e]
 gi|169653131|gb|EDS85824.1| putative asparagine synthase (glutamine-hydrolyzing) [Burkholderia
           pseudomallei S13]
          Length = 510

 Score = 40.3 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 20/120 (16%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           ESVR   R +     I V  SGG DS  +L   H             +AIS    L   +
Sbjct: 219 ESVR---RRVDTDLPICVMFSGGIDSAIVLQLAHRY-------HPDVTAISF--GL-PGS 265

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            D +      C+   I H + ++        +  A     Y       + I+A     AH
Sbjct: 266 ND-IEIAHRYCAEHGIRHVIYTFTKQDLLENIDDA---VYYGEFF---EKIDAIDSAIAH 318


>gi|312109922|ref|YP_003988238.1| argininosuccinate synthase [Geobacillus sp. Y4.1MC1]
 gi|311215023|gb|ADP73627.1| argininosuccinate synthase [Geobacillus sp. Y4.1MC1]
          Length = 402

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 57/192 (29%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            I++A SGG D S+         L +R +      A  +D         ++ +V +   +
Sbjct: 5   KIVLAYSGGLDTSVA-----IKWLQERGY---DVIACCLDLG----EGKDLDFVKEKALK 52

Query: 80  LR-IAHSVVSWKNS-KPQTGLMAAAREARYA----------------LISEHAKTINATL 121
           +  I   V+  K     +  L+A    A Y                  + E A+   A  
Sbjct: 53  VGAIKSYVIDVKEEFANEYALIALQAHALYEGKYPLVSALSRPLISKKLVEIAELEGA-- 110

Query: 122 IMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRE 175
           +  AH      +DQ+                           + +L +  P       RE
Sbjct: 111 VAVAHGCTGKGNDQV------------------RFEVSIKALNPHLEVVAPVREWSWSRE 152

Query: 176 DIRSFLLQRNIS 187
           +   +  +  I 
Sbjct: 153 EEIEYAKKHGIP 164


>gi|159905464|ref|YP_001549126.1| ExsB family protein [Methanococcus maripaludis C6]
 gi|159886957|gb|ABX01894.1| ExsB family protein [Methanococcus maripaludis C6]
          Length = 261

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 15/81 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDE 69
           +   +     +VA SGG DS        S++  +     +  A++V    R       + 
Sbjct: 57  LTQNLKKEKAVVAFSGGVDSTA------SIIVGKKI--FEICAVTV----RSKYIMDAET 104

Query: 70  VRYVSDVCSRLRIAHSVVSWK 90
              VS++  RL ++H  +   
Sbjct: 105 EENVSELVRRLNVSHEFIDVN 125


>gi|325104659|ref|YP_004274313.1| GMP synthase, large subunit [Pedobacter saltans DSM 12145]
 gi|324973507|gb|ADY52491.1| GMP synthase, large subunit [Pedobacter saltans DSM 12145]
          Length = 510

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++  +    +++A+SGG DS    + LH  + +          + VD+ L
Sbjct: 207 LKEQLGNDKVVLALSGGVDSSVAALLLHKAIGN------NLYCVFVDNGL 250


>gi|313887221|ref|ZP_07820916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923312|gb|EFR34126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 376

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 54/207 (26%)

Query: 15  SLVYPAHI-LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-------- 65
           +L   + I L+A SGG DS   +  L           I+         +++         
Sbjct: 8   ALPRDSRIALLA-SGGVDSSVAMHLLVEAGFRPDLYYIRI-------GMQDEDGGYLDCP 59

Query: 66  AKDEVRYVSDVCSRLRIAHS-----------VVSWKNSKPQTGLM-----AAAREARYAL 109
           A++++  V+ +  R  +              VV++     + GL         +  ++  
Sbjct: 60  AEEDIELVTLLARRYDLHLEVIDLHKLYWDRVVTYTMDAVKRGLTPNPDVMCNKLIKFGA 119

Query: 110 ISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT----------ILY 159
             E   + +   I T H            + R  AE    L    D           I +
Sbjct: 120 FEERCGS-SYDYIATGH----------YATIRKTAEGLTFLGTSPDPVKDQTDFLAQIGF 168

Query: 160 DLNLWISRPFLRCRREDIRSFLLQRNI 186
                +  P     +E++R   L+ ++
Sbjct: 169 RQMERLLFPIGHLPKEEVRRIALEAHL 195


>gi|269103266|ref|ZP_06155963.1| GMP synthase [glutamine-hydrolyzing] [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163164|gb|EEZ41660.1| GMP synthase [glutamine-hydrolyzing] [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 504

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 64/217 (29%), Gaps = 65/217 (29%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRS---------------- 47
           + IE     ++  V    +++ +SGG DS  + + +H  + D+                 
Sbjct: 191 NIIEDAIARIKEQVGDDEVILGLSGGVDSSVVAMLVHRAIGDKLTCVFVDNGLLRLNEGE 250

Query: 48  ------FGKIKFSAISVDHCLRETAKDEVRYVSDVC------SRLRIAHSVVSWKNSKPQ 95
                       + + V        K E R++  +       ++ +I   V      +  
Sbjct: 251 QVMDMFGDHFGLNIVHV--------KAENRFLEALAGVDEPEAKRKIIGRVFVEVFDEES 302

Query: 96  TGLMAAAREAR---Y-ALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLS 151
             L  A   A+   Y  +I   A       ++ +H                         
Sbjct: 303 KKLQNAKWLAQGTIYPDVIESAASKTGKAHVIKSHH------------------------ 338

Query: 152 GMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISW 188
                +  D+ + +  P     ++++R   L+  + +
Sbjct: 339 -NVGGLPDDMQMGLVEPLKELFKDEVRKIGLELGLPY 374


>gi|170691401|ref|ZP_02882566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia graminis C4D1M]
 gi|170143606|gb|EDT11769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Burkholderia graminis C4D1M]
          Length = 381

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 46/200 (23%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV---S 74
               ++V +SGG DS      L     D     +K               D+  Y     
Sbjct: 2   SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNW----------EDDDDSEYCSTRQ 51

Query: 75  DV------CSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARYALISE 112
           D          + I    V++                 A R          E ++    +
Sbjct: 52  DWIDVVSVADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLD 111

Query: 113 HAKTINATLIMTAHTF-----DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR 167
           HA ++ A  I T H       + + E   +++     ++   L  +    L         
Sbjct: 112 HAMSLGAETIATGHYARVRENNGRFE--LLKAFDHTKDQSYFLHRLNQAQLSKT----LF 165

Query: 168 PFLRCRREDIRSFLLQRNIS 187
           P     +  +R    Q  + 
Sbjct: 166 PLGEIPKTKVREIAEQIALP 185


>gi|134079926|emb|CAK41057.1| unnamed protein product [Aspergillus niger]
          Length = 414

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 10/102 (9%)

Query: 3   LSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
             PIES           A ++   SGG DS  LL+ L  +      G     A++VD   
Sbjct: 28  RRPIESFGHLADFDRKDAPVVTMFSGGLDSTYLLLKLQQL------GYTNIHAVAVDVG- 80

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104
              A  +   ++   +    +   +  +    + G+M A R 
Sbjct: 81  ---APVDEEGLTKHAAHFGASFKCLDGRELFVKDGVMPAIRA 119


>gi|126208074|ref|YP_001053299.1| GMP synthase [Actinobacillus pleuropneumoniae L20]
 gi|226738371|sp|A3MZV8|GUAA_ACTP2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|126096866|gb|ABN73694.1| GMP synthase (glutamine-hydrolyzing) [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 523

 Score = 40.3 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIERRVARIKEQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|332877627|ref|ZP_08445371.1| GMP synthase domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332684476|gb|EGJ57329.1| GMP synthase domain protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 516

 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++  V    +++ +SGG DS    + LH  +        +   I V++ L
Sbjct: 214 LKEQVGSEKVILGLSGGVDSTVAAVLLHKAI------GSQLHCIFVNNGL 257


>gi|332878522|ref|ZP_08446243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683617|gb|EGJ56493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 352

 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 17/121 (14%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I V +SGG DS  ++  +  +        IK         L  TA++++   +    R 
Sbjct: 2   RIAVLISGGVDSAVVVHRICEMGYKPDLFYIKIG--MEGEGLSCTAEEDIELSTATARRY 59

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKTIN--ATLIMTA 125
            +   VV  +    +  +  A   AR  L                  + +      I T 
Sbjct: 60  GLHLEVVDLQKQYWELVVGYAMERARRGLTPNPDVMCNKLIKFGCFEQEVGHRYDKIATG 119

Query: 126 H 126
           H
Sbjct: 120 H 120


>gi|322692789|gb|EFY84678.1| delta 8-(E)-sphingolipid desaturase, putative [Metarhizium acridum
           CQMa 102]
          Length = 507

 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 17/90 (18%)

Query: 48  FGKIKFSAISVD-------HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ--TGL 98
            G ++F  +          H LR       +YV + C+ + I + + S+     +  + L
Sbjct: 425 HGGLQFQVVH-HLFPRLPRHNLR----RAQKYVKEFCNDVGIPYVIFSFTRGNKEVISRL 479

Query: 99  MAAAREARYALISEHAKTINATLIMTAHTF 128
              A + R   I E  + + A  ++  H  
Sbjct: 480 AEVAEQLR---ILEECRKVAAKDLVEGHHR 506


>gi|304395506|ref|ZP_07377389.1| exsB protein [Pantoea sp. aB]
 gi|304356800|gb|EFM21164.1| exsB protein [Pantoea sp. aB]
          Length = 231

 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R   ++E+    D+ S+L
Sbjct: 5  VVV-FSGGQDSTTCLIQALEQYD--------EVHCVTFDYGQRH--REEIEVARDLASKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|256026660|ref|ZP_05440494.1| GMP synthase [Fusobacterium sp. D11]
 gi|289764658|ref|ZP_06524036.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. D11]
 gi|289716213|gb|EFD80225.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           sp. D11]
          Length = 408

 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 33/202 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE+    ++  V    +++ +SGG DS      ++  +        + + I VD   LR 
Sbjct: 98  IETTVKKIKERVGNKKVILGLSGGVDSSVAAALINKAIGK------QLTCIFVDTGLLR- 150

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKNS---------KPQTGLMAAAREARYALISEHA 114
             KDE + V +       +    ++ +            P+T      +E       E  
Sbjct: 151 --KDEAKQVMEVYAKNFDMNIKCINAEERFLTKLAGITDPETKRKIIGKEFVEVFNEEAK 208

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFL 170
           K   A  +     + D +E+V        + KG  +          +  DL   +  P  
Sbjct: 209 KIEGAEFLAQGTIYPDVIESV--------SVKGPSVTIKSHHNVGGLPKDLKFELLEPLR 260

Query: 171 RCRREDIRSFLLQRNIS-WCED 191
              ++++R    +  I  +  D
Sbjct: 261 ELFKDEVRKVGRELGIPDYMVD 282


>gi|169628750|ref|YP_001702399.1| sulfate adenylyltransferase subunit 2 [Mycobacterium abscessus ATCC
           19977]
 gi|169240717|emb|CAM61745.1| Sulfate adenylate transferase, subunit 2 (CysD) [Mycobacterium
           abscessus]
          Length = 308

 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 18  YPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSD 75
           +   +L+  SGG DS  LL      L       + FS + VD  H L     + + +  +
Sbjct: 35  FERPVLL-FSGGKDSTVLLHI---ALKAFWPAPLPFSLLHVDTGHNL----PEVLAFRDE 86

Query: 76  VCSRLRIAHSVVSWKN 91
           +  R  +   V + ++
Sbjct: 87  IVERHNLRLVVSNVED 102


>gi|149275748|ref|ZP_01881893.1| Phosphoadenylyl-sulfate reductase [Pedobacter sp. BAL39]
 gi|149233176|gb|EDM38550.1| Phosphoadenylyl-sulfate reductase [Pedobacter sp. BAL39]
          Length = 309

 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 10/130 (7%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I  +R        PA +    SGG DS+ L+            GK  F  + +D  H 
Sbjct: 23  EAIHILREVAGQFEKPALL---FSGGKDSITLVRLAEKAF---RPGKFPFPLVHIDTGHN 76

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSK--PQTGLMAAAREARYALISEHAKTINA 119
             ET     R V+ +  +L + H   S    K   QTG  A+    +   + +       
Sbjct: 77  FEETIAYRDRMVARLGEKLIVGHVQDSIDQGKVIEQTGKNASRNALQTVTLLDTIAEHGF 136

Query: 120 TLIMTAHTFD 129
              +     D
Sbjct: 137 DACIGGARRD 146


>gi|466934|gb|AAC43222.1| guaA [Mycobacterium leprae]
          Length = 590

 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 26/190 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR+ +   H +  +SGG DS     A+ + L  R+ G  + + I VDH  LR+  + +V+
Sbjct: 280 VRAQIGNGHAICGLSGGVDS-----AVAAALVQRAIGD-RLTCIFVDHGLLRDGERGQVQ 333

Query: 72  --YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTI------- 117
             +V+   ++L  +  +    +     T          R+   A        +       
Sbjct: 334 RDFVAATGAKLVTVDAAETFLQALSGVTNPEGKRKIIGRQFIRAFEGAVRDLLGDSTFDS 393

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
               ++    + D +E+             +        +  +L   +  P     ++++
Sbjct: 394 GIEFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPDNLRFKLVEPLRLLFKDEV 448

Query: 178 RSFLLQRNIS 187
           R+   Q ++ 
Sbjct: 449 RAVGRQLDLP 458


>gi|317490186|ref|ZP_07948674.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA]
 gi|316910680|gb|EFV32301.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA]
          Length = 352

 Score = 40.3 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 59/219 (26%), Gaps = 48/219 (21%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET--AKDEVRYVSDVC 77
             I + +SGG DS      L            +   ++     R+    +      + VC
Sbjct: 5   GRIALGMSGGVDSAVSAALLMR-------AGYEVVGVTC--RFRDNAATERAAADAAAVC 55

Query: 78  SRLRIAHSVVSWKNSKPQTGLM------AAA----------REARYALISEHAKTINATL 121
           S+L I H          +  +       AA              +   +   A  +    
Sbjct: 56  SQLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDR 115

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGL-----------SGMCDTILYDLNLWISRPFL 170
           I T H           R  R   + G  +           S M   +  +    +  P  
Sbjct: 116 IATGHYA---------RIARLS-DSGRFVVKRALDARKDQSYMLSLLSQEQLARLVLPLG 165

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDRFERVRVRRFVR 209
              + ++R       +   E   + D+ F     R F+R
Sbjct: 166 AMTKAEVRVIAADLGLVVAEKAESQDNCFIEGDYRPFLR 204


>gi|326490716|dbj|BAJ90025.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1010

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E ++     +    H++ A+SGG DS      +H+ + DR         + VD+ L
Sbjct: 223 EEIKTIQSMVGPDEHVICALSGGVDSTVAATLVHNAIGDR------LHCVFVDNGL 272


>gi|307728891|ref|YP_003906115.1| Sulfate adenylyltransferase [Burkholderia sp. CCGE1003]
 gi|307583426|gb|ADN56824.1| Sulfate adenylyltransferase [Burkholderia sp. CCGE1003]
          Length = 320

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 26  VSGGSDS-MGLLIALHSV-LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS + L +AL +  +       + F  + +D  H   E      R   ++ ++L 
Sbjct: 48  FSGGKDSVVVLALALKAFGIGANRKTVLPFPLVHIDTGHNYDEVIDFRDRRAKEIGAQLV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K    +      +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVRLRRETDSRNAAQAVTLLETIEQHGYTALIGGARRD 156


>gi|210135491|ref|YP_002301930.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori P12]
 gi|210133459|gb|ACJ08450.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase
           [Helicobacter pylori P12]
          Length = 362

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 22  KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 69

Query: 75  DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTIN 118
             C  L I   V+ ++                        A      ++ L  +HA  + 
Sbjct: 70  KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 129

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 130 CEKIATGH 137


>gi|161353441|ref|NP_223972.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori J99]
 gi|205371768|sp|Q9ZJQ0|MNMA_HELPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 342

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTIN 118
             C  L I   V+ ++                        A      ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|161353438|ref|NP_208127.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori 26695]
 gi|205371769|sp|O25893|MNMA_HELPY RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 342

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTIN 118
             C  L I   V+ ++                        A      ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|4155868|gb|AAD06840.1| putative TRNA
           (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
           [Helicobacter pylori J99]
          Length = 360

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 20  KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 67

Query: 75  DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTIN 118
             C  L I   V+ ++                        A      ++ L  +HA  + 
Sbjct: 68  KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLG 127

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 128 CEKIATGH 135


>gi|161528974|ref|YP_001582800.1| asparagine synthase [Nitrosopumilus maritimus SCM1]
 gi|160340275|gb|ABX13362.1| asparagine synthase [Nitrosopumilus maritimus SCM1]
          Length = 251

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 7  ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
          ++++  +   V    I +A SGG DS      +  +  D  +     + +++       +
Sbjct: 10 DNIKTAITQTVTDKKIGIAYSGGVDST----LISKICKDMDY---DITLLTI--GF-AES 59

Query: 67 KDEVRYVSDVCSRLRIAHSVVSWK 90
           D + +  +V  +L   H ++  +
Sbjct: 60 HD-ILFAKEVNEQLNYPHHILEIE 82


>gi|161831532|ref|YP_001597186.1| GMP synthase [Coxiella burnetii RSA 331]
 gi|226738432|sp|A9N8L6|GUAA_COXBR RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|161763399|gb|ABX79041.1| GMP synthase [Coxiella burnetii RSA 331]
          Length = 524

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 91/288 (31%), Gaps = 38/288 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++V +SGG DS      +H  + D      +   + VD   LR    DEV 
Sbjct: 221 IQEKVGKEQVIVGLSGGVDSAVTATLVHKAIGD------QLVCVLVDTGLLRLNEVDEVL 274

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTINATLIM 123
            V      L      V  K+      K  +      + A         E AK +N   + 
Sbjct: 275 NVFQ--KHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLG 332

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+      +      +        +  ++ L +  P     ++++R   L+
Sbjct: 333 QGTIYPDVIES---AKTKTGKVHIIKTHHNVGGLPLNMELKLIEPLRELFKDEVRKLGLE 389

Query: 184 RNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +         D  + R         +R+   V    ++ L      F +   K +   
Sbjct: 390 LGLP-------ADLIY-RHPFPGPGLAIRILGEVSAEYINILKQADAIFIEELKKSDYYH 441

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
            +     + + ++S + +  D  +    +    ++    +      LP
Sbjct: 442 QVSQAFAVFMPLKS-VGVKGDARHYGYIIALRAVKTVDFMTAQWADLP 488


>gi|54023384|ref|YP_117626.1| sulfate adenylyltransferase subunit 2 [Nocardia farcinica IFM
           10152]
 gi|54014892|dbj|BAD56262.1| putative sulfate adenylyltransferase subunit 2 [Nocardia farcinica
           IFM 10152]
          Length = 314

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 26  VSGGSDSMGLLI-ALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS  LL  AL +         + F+ + VD  H L E  +   + V     RL +
Sbjct: 48  FSGGKDSTVLLHVALKAFWP----APLPFALLHVDTGHNLPEVLEFRDKVVEKYGLRLHV 103

Query: 83  A 83
           A
Sbjct: 104 A 104


>gi|85712713|ref|ZP_01043758.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Idiomarina baltica OS145]
 gi|85693445|gb|EAQ31398.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Idiomarina baltica OS145]
          Length = 525

 Score = 40.3 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 62/187 (33%), Gaps = 23/187 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    +++ +SGG DS    + LH  +        + + + VD+  LR     E  
Sbjct: 221 IREQVGSDKVILGLSGGVDSSVTAMLLHRAI------GSQLTCVFVDNGLLRLN---EAE 271

Query: 72  YVSD-VCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALI---------SEHAKTINATL 121
            V +       +    V+ +          A  E +  +I          + ++      
Sbjct: 272 QVMEMFGDHFGLNIIPVAAEQRFLDALKGEADPEKKRKIIGNTFIEIFDEQASQLTEVDW 331

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +  D+ L +  P     ++++R   
Sbjct: 332 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEDMKLGLVEPLRELFKDEVRKIG 388

Query: 182 LQRNISW 188
           L+  + +
Sbjct: 389 LELGLPY 395


>gi|307638008|gb|ADN80458.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyl transferase
           [Helicobacter pylori 908]
 gi|325996611|gb|ADZ52016.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 2018]
 gi|325998201|gb|ADZ50409.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase
           [Helicobacter pylori 2017]
          Length = 342

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTIN 118
             C  L I   V+ ++                        A      ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALKHALKLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|289191725|ref|YP_003457666.1| NAD+ synthetase [Methanocaldococcus sp. FS406-22]
 gi|288938175|gb|ADC68930.1| NAD+ synthetase [Methanocaldococcus sp. FS406-22]
          Length = 253

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 10/86 (11%)

Query: 4  SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            +  +  F++  V  A    ++V +SGG DS          L       +       + 
Sbjct: 3  EIVNKITKFIKENVEEAKANGVVVGLSGGIDSSVTAYLCVKALGKDKVLGLIMPEKHTN- 61

Query: 61 CLRETAKDEVRYVSDVCSRLRIAHSV 86
                  ++ +   V   L I + +
Sbjct: 62 ------PRDIEHAKMVAENLGIKYII 81


>gi|290893577|ref|ZP_06556560.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
 gi|290556922|gb|EFD90453.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
          Length = 434

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +I+V+ SGG DS  +L  +   +   +  K K     +D+
Sbjct: 22 DNIIVSFSGGKDSAVMLHLMIDYMRKNNIQK-KIYVYHLDY 61


>gi|261418229|ref|YP_003251911.1| argininosuccinate synthase [Geobacillus sp. Y412MC61]
 gi|319767811|ref|YP_004133312.1| argininosuccinate synthase [Geobacillus sp. Y412MC52]
 gi|261374686|gb|ACX77429.1| argininosuccinate synthase [Geobacillus sp. Y412MC61]
 gi|317112677|gb|ADU95169.1| argininosuccinate synthase [Geobacillus sp. Y412MC52]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 57/192 (29%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S+         L +R +      A  +D         ++ +V +   +
Sbjct: 5   KLVLAYSGGLDTSVA-----IKWLQERGY---DVIACCLDLG----EGKDLDFVKEKALK 52

Query: 80  LR-IAHSVVSWKNS-KPQTGLMAAAREARYA----------------LISEHAKTINATL 121
           +  I   V+  K+    +  L+A    A Y                  + E A+   A  
Sbjct: 53  VGAIKSYVIDVKDEFANEYALIALQANALYEGKYPLVSALSRPLIAKKLVEIAELEGA-- 110

Query: 122 IMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRE 175
           +  AH      +DQ+                           + +L +  P       RE
Sbjct: 111 VAVAHGCTGKGNDQV------------------RFEVSIKALNPDLEVIAPVREWSWSRE 152

Query: 176 DIRSFLLQRNIS 187
           +   +  +  I 
Sbjct: 153 EEIEYAKKHGIP 164


>gi|217964543|ref|YP_002350221.1| Co-activator of prophage gene expression IbrA [Listeria
          monocytogenes HCC23]
 gi|217333813|gb|ACK39607.1| Co-activator of prophage gene expression IbrA [Listeria
          monocytogenes HCC23]
 gi|307570891|emb|CAR84070.1| conserved hypothetical protein [Listeria monocytogenes L99]
          Length = 434

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +I+V+ SGG DS  +L  +   +   +  K K     +D+
Sbjct: 22 DNIIVSFSGGKDSAVMLHLMIDYMRKNNIQK-KIYVYHLDY 61


>gi|218777977|ref|YP_002429295.1| GMP synthase [Desulfatibacillum alkenivorans AK-01]
 gi|218759361|gb|ACL01827.1| GMP synthase, large subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 509

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 68/194 (35%), Gaps = 17/194 (8%)

Query: 2   FLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC 61
             S ++     ++       +++ +SGG DS    + +H  +            I VD+ 
Sbjct: 194 MKSFVKEAVDEIKEAAGDDKVILGLSGGVDSSVAAVLIHKAIGK------NLYPIFVDNG 247

Query: 62  -LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR------YALISEHA 114
            LR+   D ++ V      +++ ++  S K      G+    ++ +        +  E A
Sbjct: 248 LLRKGEADRLKEVFTQNLNMKVRYAKASRKFLSGLKGVTDPEKKRKIIGKVFMDVFEEEA 307

Query: 115 KTI-NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           K I  A  +     + D +E+V   S        +        +   + L +  P     
Sbjct: 308 KKIKGAKFLAQGTLYPDIIESV---SAFGGPSAVIKSHHNVGGLPKKMKLKLIEPLKYLF 364

Query: 174 REDIRSFLLQRNIS 187
           ++++R    +  + 
Sbjct: 365 KDEVRLLGEELGLP 378


>gi|168334381|ref|ZP_02692565.1| Argininosuccinate synthase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 403

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 61/416 (14%), Positives = 125/416 (30%), Gaps = 51/416 (12%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              +++A SGG D S+        V   R        A+ ++         E+  + D  
Sbjct: 2   KEKVVLAFSGGLDTSV-------IVPWLRENYDYDVIAVCINVGQ----DKELXGLEDRA 50

Query: 78  SRLRIA-HSVVSWKNSKPQTGL-----MAAAREARYALISEHAKTINATLIMTAHTFDDQ 131
             + +A   +   K    +  +       A  E+RY L +  A+ + A +++      D 
Sbjct: 51  KAMGVAKLYIEDVKEEFAKDYIFPMLKSGAIYESRYYLGTSIARPLIAKVLV------DI 104

Query: 132 L--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL---RCRREDIRSFLLQRNI 186
              E           +    +           ++ I  P+       R+    +L QRN 
Sbjct: 105 AIKENAVAICHGCTGKGNDQVRFELAIKSLAPHIQIIAPWRIWDITSRDQEIEYLQQRNX 164

Query: 187 SWCEDPSNTDDRFERV----RVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAMLIPKYL 242
                P   ++ + R      +     D++             L      A        +
Sbjct: 165 PV---PMKKEESYSRDLNLWHISHEGLDLENPENAPNYDTLLKLGTYPEKAPENAETITI 221

Query: 243 TVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCV 302
           T        ++   L+     L   L       GG+  +     +E  ++ +KS +    
Sbjct: 222 TFEKGEPTHLNDQALS--PAKLIEELNKL----GGKHGIGIEDIVENRVVGMKS-RGVYE 274

Query: 303 SIGRVVIDRRA---NFLWITRAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQIGPQSY 359
           + G  ++         L + R        +       ++DG++ F  L D+L      + 
Sbjct: 275 TPGGKILYYAHEMIEHLTLDRETYQYKQQVALEYSRLIYDGKW-FTPLRDALAAFVDSTQ 333

Query: 360 RKADVPSGIPPIIAQRALSSMPSKEGGKPLLAPFSRFMTK--FDLPVAYAFSISFG 413
           R   V   +   + +  + S  +           + F T   ++   A  F   FG
Sbjct: 334 R--FVSGKVTLKLYKGNIISQGAASKYSLYSEDLASFTTGDLYNHHDADGFITLFG 387


>gi|110597654|ref|ZP_01385939.1| GMP synthase [Chlorobium ferrooxidans DSM 13031]
 gi|110340774|gb|EAT59251.1| GMP synthase [Chlorobium ferrooxidans DSM 13031]
          Length = 513

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R       ++  +SGG DS        +VL  R+ GK +   + VD+  LR+    E  
Sbjct: 214 IRQKAGKETVICGISGGVDSTV-----AAVLVSRAIGK-QLHCVFVDNGLLRKN---EAE 264

Query: 72  YVSDVCSRLRI-----AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            V      L +       S +     K         +      I    + +N    +   
Sbjct: 265 KVMSFLKPLGLRVTLADASDLFLNRLKSVASPEKKRKIIGRTFIQVFEEHMNQEKFLVQG 324

Query: 127 TF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           T   D +E+V ++   +  +    + G+       + L +  P     ++++R+   +  
Sbjct: 325 TLYPDVIESVSVKGPSETIKSHHNVGGL----PKRMKLKLIEPLRELFKDEVRAVGRELG 380

Query: 186 ISWCED 191
           I+  ED
Sbjct: 381 IA--ED 384


>gi|71064590|ref|YP_263317.1| GMP synthase [Psychrobacter arcticus 273-4]
 gi|91206823|sp|Q4FVS5|GUAA_PSYA2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|71037575|gb|AAZ17883.1| GMP synthase (glutamine-hydrolyzing) [Psychrobacter arcticus 273-4]
          Length = 536

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++  +    +L+ +SGG DS  +   LH  + D      + + + VD
Sbjct: 226 LKKQIGDKQVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVD 266


>gi|119774961|ref|YP_927701.1| ExsB protein [Shewanella amazonensis SB2B]
 gi|167016452|sp|A1S6M5|QUEC_SHEAM RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|119767461|gb|ABM00032.1| ExsB protein [Shewanella amazonensis SB2B]
          Length = 230

 Score = 40.3 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +  AI+ D+  R +  +E+     + S L
Sbjct: 5   VVV-FSGGQDSTTCLVQALSQFD--------EVHAITFDYGQRHS--EEIEVAKALTSEL 53

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREA 105
             A   +   +   +  + A  R+A
Sbjct: 54  GCASHKIMDVSLLGELAISALTRDA 78


>gi|294664076|ref|ZP_06729476.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292606150|gb|EFF49401.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 521

 Score = 40.3 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR  V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VREQVGDDEVILGLSGGVDSSVVAALLHKAIGDK------LTCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    +     +           A R+    L  E          NA  
Sbjct: 271 AM---FAEHMGVKVIRINAADRYFAKLEGVSDPEAKRKIIGNLFVEIFDEESNKLANAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRRLG 384

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 385 VELGLP 390


>gi|255030664|ref|ZP_05302615.1| hypothetical protein LmonL_19003 [Listeria monocytogenes LO28]
          Length = 236

 Score = 40.3 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +I+V+ SGG DS  +L  +   +   +  K K     +D+
Sbjct: 22 DNIIVSFSGGKDSAVMLHLMIDYIRKNNIRK-KIYVYHLDY 61


>gi|16803350|ref|NP_464835.1| hypothetical protein lmo1310 [Listeria monocytogenes EGD-e]
 gi|47096935|ref|ZP_00234512.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
          F6854]
 gi|224500633|ref|ZP_03668982.1| hypothetical protein LmonF1_13561 [Listeria monocytogenes Finland
          1988]
 gi|224501746|ref|ZP_03670053.1| hypothetical protein LmonFR_04397 [Listeria monocytogenes FSL
          R2-561]
 gi|254828671|ref|ZP_05233358.1| conserved hypothetical protein [Listeria monocytogenes FSL
          N3-165]
 gi|254829933|ref|ZP_05234588.1| hypothetical protein Lmon1_01190 [Listeria monocytogenes 10403S]
 gi|254898525|ref|ZP_05258449.1| hypothetical protein LmonJ_01880 [Listeria monocytogenes J0161]
 gi|254911984|ref|ZP_05261996.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936311|ref|ZP_05268008.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284801695|ref|YP_003413560.1| hypothetical protein LM5578_1449 [Listeria monocytogenes 08-5578]
 gi|284994837|ref|YP_003416605.1| hypothetical protein LM5923_1402 [Listeria monocytogenes 08-5923]
 gi|16410726|emb|CAC99388.1| lmo1310 [Listeria monocytogenes EGD-e]
 gi|47014695|gb|EAL05651.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
          F6854]
 gi|258601074|gb|EEW14399.1| conserved hypothetical protein [Listeria monocytogenes FSL
          N3-165]
 gi|258608901|gb|EEW21509.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057257|gb|ADB68198.1| hypothetical protein LM5578_1449 [Listeria monocytogenes 08-5578]
 gi|284060304|gb|ADB71243.1| hypothetical protein LM5923_1402 [Listeria monocytogenes 08-5923]
 gi|293589947|gb|EFF98281.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 434

 Score = 40.3 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +I+V+ SGG DS  +L  +   +   +  K K     +D+
Sbjct: 22 DNIIVSFSGGKDSAVMLHLMIDYIRKNNIRK-KIYVYHLDY 61


>gi|319405818|emb|CBI79448.1| NH3-dependent NAD synthetase [Bartonella sp. AR 15-3]
          Length = 558

 Score = 40.3 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVRYVSDVCSRL 80
           +L+  SGG DS     AL + ++  + G  +  A+ + +C   + +  + ++ + +   L
Sbjct: 293 VLLGFSGGIDS-----ALCAAIAVDALGAERVRAVMMPYCYTSQESLKDAKHCAHL---L 344

Query: 81  RIAHSVVSW 89
              + V+  
Sbjct: 345 GCRYEVIPI 353


>gi|312136982|ref|YP_004004319.1| tRNA methyl transferase [Methanothermus fervidus DSM 2088]
 gi|311224701|gb|ADP77557.1| tRNA methyl transferase [Methanothermus fervidus DSM 2088]
          Length = 338

 Score = 40.3 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 7/39 (17%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
            +LVA+SGG DS   L+ +  +            A++VD
Sbjct: 133 KVLVALSGGVDSSFSLVVMKYL-------GFDVEAVTVD 164


>gi|295111270|emb|CBL28020.1| conserved hypothetical protein TIGR00268 [Synergistetes bacterium
           SGP1]
          Length = 299

 Score = 40.3 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 40/191 (20%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET- 65
           E +R   R L     + V +SGG DS                      A+++     E+ 
Sbjct: 12  ERLRGVRRLLEAMGDVAVMLSGGVDS------ALLAALAHEALGRHAVAVTI-----ESP 60

Query: 66  --AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTI 117
             + DE      + +++ I H V+     +               +  R   +   A   
Sbjct: 61  LLSADERADAGRLAAQVGIRHKVLPMDELEDAGFVANPRDRCHLCKRMRLEAVVRWAAER 120

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRRE 175
               ++     DD               +G    GM   + +     +  P L     + 
Sbjct: 121 GIPWVLDGANADD---------------RGDYRPGMKALMEFGS---VRSPLLEAGMTKA 162

Query: 176 DIRSFLLQRNI 186
           ++R+      +
Sbjct: 163 EVRAAARAMGL 173


>gi|229489941|ref|ZP_04383794.1| sulfate adenylyltransferase subunit 2 [Rhodococcus erythropolis
           SK121]
 gi|229323042|gb|EEN88810.1| sulfate adenylyltransferase subunit 2 [Rhodococcus erythropolis
           SK121]
          Length = 308

 Score = 40.3 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 7   ESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLR 63
           E+V  F   +  +   +L+  SGG DS+ +L              + F+ + VD  H   
Sbjct: 21  EAVHIFREVAATFEKPVLL-FSGGKDSVVMLHVAAKAF---WPAPLPFAVMHVDTGHNF- 75

Query: 64  ETAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
               + + +      R  +   V S ++ 
Sbjct: 76  ---DEVIEFRDQTVDRFNLRLVVSSVQDD 101


>gi|254820453|ref|ZP_05225454.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 358

 Score = 40.3 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 62/211 (29%), Gaps = 50/211 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET------------AKD 68
            +L A+SGG DS      +     D          + V   L  +            +K+
Sbjct: 2   KVLAAMSGGVDSSVAAARMVDAGHD---------VVGVHLALSSSPGTLRSGSRGCCSKE 52

Query: 69  EVRYVSDVCSRLRIAHSV----VSWKNSKPQTGLMAAAR------------EARYALISE 112
           +      V   L I   V      ++       + + AR            + +++ +S 
Sbjct: 53  DASDARRVADVLGIPFYVWDFAEKFQADVIDEFVSSYARGETPNPCVVCNQKIKFSALSA 112

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----P 168
            A  +    + T H           R       + +        +L  L+    R    P
Sbjct: 113 RAVALGFDTVATGHYA---------RLSGGRLRRAVDHDKDQSYVLAVLSAEQLRHAAFP 163

Query: 169 FLRCRREDIRSFLLQRNISWCEDPSNTDDRF 199
                +  IR+   +R ++  E P + D  F
Sbjct: 164 IGDTPKSQIRAEAARRGLAVAEKPDSHDICF 194


>gi|203288361|ref|YP_002223411.1| GMP synthase (glutamine-hydrolysing) (glutamine amidotransferase)
           [Borrelia recurrentis A1]
 gi|201085581|gb|ACH95154.1| GMP synthase (glutamine-hydrolysing) (glutamine amidotransferase)
           [Borrelia recurrentis A1]
          Length = 513

 Score = 40.3 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 62/193 (32%), Gaps = 19/193 (9%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IE +   +R  V  + +++ +SGG DS+   + ++  + D          + VD   L
Sbjct: 200 NSIEDLVKGIRHEVGDSKVILGLSGGIDSLVCALLINKAIKD------NLICVFVDTGFL 253

Query: 63  RE-TAKDEVRYVSDVCSRLRIAHSVVSW-------KNSKPQTGLMAAAREARYALISEHA 114
           R+  A   + +       L I H   S            P+       +           
Sbjct: 254 RKNEANGILEFNKKY--NLNIKHIDSSLLFLTNLRDVDDPEEKRKIIGKTFVEIFEKVAL 311

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRR 174
           +  +   +     + D +E+    +        +        +   +NL +  P     +
Sbjct: 312 EEDDIKYLAQGTIYSDVIESDVKNNVCSSTN--IKSHHNVGGLPDKINLNLLEPLRNLFK 369

Query: 175 EDIRSFLLQRNIS 187
           +++    +Q  + 
Sbjct: 370 DEVIQLGVQLGLE 382


>gi|332667873|ref|YP_004450661.1| tRNA-specific 2-thiouridylase mnmA [Haliscomenobacter hydrossis DSM
           1100]
 gi|332336687|gb|AEE53788.1| tRNA-specific 2-thiouridylase mnmA [Haliscomenobacter hydrossis DSM
           1100]
          Length = 370

 Score = 40.3 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 77/238 (32%), Gaps = 61/238 (25%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---DHCLRETAKDEVRYV--- 73
             +LVA+SGG DS    + LH           +   I++   D+     +K E       
Sbjct: 5   GKVLVAMSGGIDSTVTAMLLHE-------EGYEVIGITMKTWDYANSGGSKKETGCCSLD 57

Query: 74  -----SDVCSRLRIAHSVVSWKNSKP----QTGLMA--AAR----------EARYALISE 112
                 +V   +   H ++  ++          +    A R            ++  + +
Sbjct: 58  SINDAREVAVSMGFHHFIIDIRDEFGDFVIDNFVEEYIAGRTPNPCVLCNTHIKWNALLK 117

Query: 113 HAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----P 168
            A +++   I T H    Q++ +   + R Y  KG         +L+ L+         P
Sbjct: 118 RANSLDCEFIATGHYA--QVKDL---NGRKYISKGADPHKDQSYVLWGLSQEALHRTQFP 172

Query: 169 FLRCRREDIRSFL------------LQRNISWCEDPSNTDDRFERVRVRRFVRDIDLH 214
             +  + ++R                   I +  D     + + R  ++R + D++  
Sbjct: 173 VGKFTKPEVRQIAFDAGYAELSKKSESYEICFVPD-----NDY-RGFLKRRLPDLEEQ 224


>gi|329765326|ref|ZP_08256906.1| NAD+ synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329138232|gb|EGG42488.1| NAD+ synthetase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 264

 Score = 40.3 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 8  SVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIALHSVLSDRSFGKI 51
           +  F+   +  +    +++ +SGG DS  L      +L +++   I
Sbjct: 20 KIEEFLVQQIEKSKSNGVILGLSGGIDSAVLAYICKRILKEKTLAII 66


>gi|270308669|ref|YP_003330727.1| phosphoadenosine phosphosulfate reductase [Dehalococcoides sp.
          VS]
 gi|289433161|ref|YP_003463034.1| phosphoadenosine phosphosulfate reductase [Dehalococcoides sp.
          GT]
 gi|270154561|gb|ACZ62399.1| phosphoadenosine phosphosulfate reductase [Dehalococcoides sp.
          VS]
 gi|288946881|gb|ADC74578.1| phosphoadenosine phosphosulfate reductase [Dehalococcoides sp.
          GT]
          Length = 342

 Score = 40.3 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 24 VAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          +A SGG DS  LL  ++  L +        + +  D
Sbjct: 28 LAFSGGKDSSALLKLVYVALQNIGKKLKPVTVVYCD 63


>gi|57242393|ref|ZP_00370331.1| GMP synthase [Campylobacter upsaliensis RM3195]
 gi|57016678|gb|EAL53461.1| GMP synthase [Campylobacter upsaliensis RM3195]
          Length = 517

 Score = 40.3 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 71/199 (35%), Gaps = 32/199 (16%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S I  +R     ++    +L AVSGG DS  + I L+  + +          + VD   L
Sbjct: 205 SEIAKLR---EKVLGGDKVLCAVSGGVDSSVVAILLYRAIGE------NLIPVFVDTGLL 255

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWKN---SKPQTGLMAAAREARY-------ALISE 112
           R+  ++ V   +     L++   V   +     + +        + R         +   
Sbjct: 256 RKGEREAVE--AMFKENLKVPLIVADARELFLRRLKGVTEPE--QKRKIIGETFIEVFEA 311

Query: 113 HAKTIN----ATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
            AK  N       +     + D +E+V ++      +    + G+ + + ++    +  P
Sbjct: 312 EAKKHNTKGEIKFLAQGTLYPDVIESVSVKGPSKTIKSHHNVGGLPEWMKFE----LIEP 367

Query: 169 FLRCRREDIRSFLLQRNIS 187
                ++++R+   +  + 
Sbjct: 368 LRELFKDEVRALGRELGMP 386


>gi|113460567|ref|YP_718631.1| GMP synthase [Haemophilus somnus 129PT]
 gi|123327192|sp|Q0I2D2|GUAA_HAES1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|112822610|gb|ABI24699.1| GMP synthase (glutamine-hydrolyzing) [Haemophilus somnus 129PT]
          Length = 523

 Score = 40.3 bits (93), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKAQVGGDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|328791116|ref|XP_001122723.2| PREDICTED: cytoplasmic tRNA 2-thiolation protein 2-like [Apis
           mellifera]
          Length = 494

 Score = 40.3 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
             A+ +N   +  A T  D    V          +        D    D  + + RP   
Sbjct: 217 FAARKLNCNKVFIADTSIDLAIKVLGDVSTGRGSQLSFNVAFSDERYSD--VKLLRPLRD 274

Query: 172 CRREDIRSFLLQRNISWCEDPSNTDDRF---ERVRVRRFVRDIDLH 214
             ++DI +++    +    +P   +  F    R   R FV  +D  
Sbjct: 275 FTKDDIIAYMECCELHPILNPQKYNFCFPSSIRNIARNFVYKLDSE 320


>gi|317404875|gb|EFV85246.1| hypothetical protein HMPREF0005_03810 [Achromobacter xylosoxidans
          C54]
          Length = 407

 Score = 40.3 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 3  LSPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          L+  ++ +  +R +      + VA SGG DS   L     V  +   G     A+ +D
Sbjct: 9  LNVHDAAKARLRLVFQHFERVCVAFSGGKDSSVTLHLALEVAREMKRGP--VHAVFID 64


>gi|253582177|ref|ZP_04859400.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC
           27725]
 gi|251835716|gb|EES64254.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC
           27725]
          Length = 362

 Score = 40.3 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 28/121 (23%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I VA+SGG DS  +   L       +   I         C  E +         VC  L 
Sbjct: 26  IAVAMSGGVDSSTVAYLLKK--QGYNVFGITMKT-----CKPEDSD-----AKKVCDDLG 73

Query: 82  IAHSVVSWKNSKPQT---------------GLMAAARE-ARYALISEHAKTINATLIMTA 125
           I + ++       +                       +  +  L+ + A++  A  + T 
Sbjct: 74  IPYYLLDVTKEFKEKVMDYFVDEYLKGKTPNPCMVCNKYIKLGLLIDFARSKGADFMATG 133

Query: 126 H 126
           H
Sbjct: 134 H 134


>gi|154151526|ref|YP_001405144.1| hypothetical protein Mboo_1987 [Candidatus Methanoregula boonei
           6A8]
 gi|154000078|gb|ABS56501.1| thiamine biosynthesis protein [Methanoregula boonei 6A8]
          Length = 213

 Score = 40.3 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 57/175 (32%), Gaps = 40/175 (22%)

Query: 26  VSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDE--------VRYVSDV 76
           +SGG DS +   + LH          ++  A+ +D   R    ++        +R++  +
Sbjct: 8   ISGGIDSPVAAYLMLHQ--------GVEIIAVHMD--NRPFTDEKNLHKAMNLIRHLQHL 57

Query: 77  CSR----LRIAH--SVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
             R      + H  + +++  +  +       R   Y +    A+   A  I+T  +   
Sbjct: 58  TQRPIKTYVVPHGPNHIAFARNCERHLHCLFCRRMMYRIAERIAEKEGAVGILTGESLGQ 117

Query: 131 QLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
                                 M + ++  + + + RP +   + +I     +  
Sbjct: 118 VASQTLQNL-------------MVENLV--IRIPVVRPLIGMDKVEIIDIARRIG 157


>gi|67522853|ref|XP_659487.1| hypothetical protein AN1883.2 [Aspergillus nidulans FGSC A4]
 gi|40745892|gb|EAA65048.1| hypothetical protein AN1883.2 [Aspergillus nidulans FGSC A4]
          Length = 468

 Score = 40.3 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 61/192 (31%), Gaps = 48/192 (25%)

Query: 19  PAHILVAVSGGSD-SMGLLIAL----------HSVLSDRSFGKI-----KFSAI---SVD 59
              I VA SGG D S+ L   +            V  +  F  I     K  A+    VD
Sbjct: 3   KGKICVAFSGGLDTSVILKWLIDEGYEVVAFTADVGQEEDFAAIKEKALKLGAVKAEVVD 62

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
             LR        +V ++C    IA + +        T L   AR        E AK    
Sbjct: 63  --LRRE------FVEELCFPA-IACNAIYENVYLLGTSL---ARPVIARAQIEVAKREGC 110

Query: 120 TLIMTAHT--FDDQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +    T   +DQ+  E  +   Q D       ++   D   Y+             R 
Sbjct: 111 FAVSHGCTGKGNDQVRFELAFYALQPDIKV----IAPWRDPRFYER---------FAGRN 157

Query: 176 DIRSFLLQRNIS 187
           D+ ++  ++ I 
Sbjct: 158 DLLAYAAEKGIP 169


>gi|326795519|ref|YP_004313339.1| exsB protein [Marinomonas mediterranea MMB-1]
 gi|326546283|gb|ADZ91503.1| exsB protein [Marinomonas mediterranea MMB-1]
          Length = 219

 Score = 40.3 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          ++V  SGG DS        +VL+          A+S ++  R +   E+   + VC  L 
Sbjct: 6  VVV-YSGGMDS-------FTVLNKAIKDGKDVYALSFNYGQRHS--KELIVAAKVCQDLN 55

Query: 82 IAHSVVSWKN 91
          I H VV+   
Sbjct: 56 IPHKVVNISA 65


>gi|300858284|ref|YP_003783267.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685738|gb|ADK28660.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206004|gb|ADL10346.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudotuberculosis C231]
 gi|302330557|gb|ADL20751.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276239|gb|ADO26138.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
           [Corynebacterium pseudotuberculosis I19]
          Length = 372

 Score = 40.3 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 37/134 (27%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-------RETAK-----D 68
            +L A+SGG DS           +       +   + +   L       RE+++     +
Sbjct: 2   RVLAAMSGGVDS-------AVAAARAVAAGHEVVGVHLA--LSQDPQTVRESSRGCCSLE 52

Query: 69  EVRYVSDVCSRLRIAHSVVSWKNSKPQ-------TGLMAAA---------REARYALISE 112
           +      VC +L I   V  + +   +       +   A            + ++A + E
Sbjct: 53  DSADARRVCDKLGIPFYVWDFSDRFKEDVIDDFISSYEAGETPNPCLRCNEKIKFAALLE 112

Query: 113 HAKTINATLIMTAH 126
               +    ++T H
Sbjct: 113 RGIALGFDAVVTGH 126


>gi|307720640|ref|YP_003891780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978733|gb|ADN08768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 341

 Score = 40.3 bits (93), Expect = 0.68,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 39/187 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRY 72
              +LV +SGG DS    + L     +      +   K  +  I      +  A+    +
Sbjct: 2   KEKVLVGMSGGVDSTITSLLLKEQGYEVEGLYMKLHSKPGYHEIH-----QARAQKAADF 56

Query: 73  VSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHAKT 116
           V        I   V+  +                        A   R  ++  + + A  
Sbjct: 57  V-------GIKLHVLDLQETFNEKVFQPFIDTYAEGKTPNPCALCNRNLKFGEMIKFADE 109

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
           I A  + T H      E     +  D  ++   L  +   IL  L      P     ++D
Sbjct: 110 IGAQYLATGHYIKTDGE-YLYAADDDTKDQSYFLFYINREILPRLKF----PLGERHKKD 164

Query: 177 IRSFLLQ 183
           I+     
Sbjct: 165 IKELAAS 171


>gi|297529083|ref|YP_003670358.1| argininosuccinate synthase [Geobacillus sp. C56-T3]
 gi|297252335|gb|ADI25781.1| argininosuccinate synthase [Geobacillus sp. C56-T3]
          Length = 406

 Score = 40.3 bits (93), Expect = 0.68,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 60/195 (30%), Gaps = 63/195 (32%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
            +++A SGG D S+         L +R +      A  +D         ++ +V +   +
Sbjct: 5   KLVLAYSGGLDTSVA-----IKWLQERGY---DVIACCLDLG----EGKDLDFVKEKALK 52

Query: 80  LR-IAHSVVSWKNS-KPQTGLMAAAREARYA----------------LISEHAKTINATL 121
           +  I   V+  K+    +  L+A    A Y                  + E A+   A  
Sbjct: 53  VGAIKSYVIDVKDEFANEYALIALQANALYEGKYPLVSALSRPLIAKKLVEIAELEGA-- 110

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC--------- 172
           +  AH                    G G     D + +++++    P L           
Sbjct: 111 VAVAH-----------------GCTGKG----NDQVRFEVSIKALNPDLDVIAPVREWSW 149

Query: 173 RREDIRSFLLQRNIS 187
            RE+   +  +  I 
Sbjct: 150 SREEEIEYAKKHGIP 164


>gi|93004847|ref|YP_579284.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Psychrobacter cryohalolentis K5]
 gi|92392525|gb|ABE73800.1| GMP synthase (glutamine-hydrolyzing) [Psychrobacter cryohalolentis
           K5]
          Length = 531

 Score = 40.3 bits (93), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 6/47 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           ++  +    +L+ +SGG DS  +   LH  + D      + + + VD
Sbjct: 221 LKKQIGDKQVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVD 261


>gi|332259082|ref|XP_003278617.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Nomascus
           leucogenys]
          Length = 421

 Score = 40.3 bits (93), Expect = 0.68,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 30/130 (23%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAISVDHCLRETAKDEVRYV 73
            H++ AVSGG DS    + L            +++  +    +        TA  +    
Sbjct: 5   RHVVCAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVC-------TADKDCEDA 57

Query: 74  SDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREARY--------------ALISEHAKT 116
             VC  L I    VS+         +  +    + R                        
Sbjct: 58  YRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDN 117

Query: 117 INATLIMTAH 126
           + A  I T H
Sbjct: 118 LGADAIATGH 127


>gi|148997816|ref|ZP_01825380.1| hypothetical protein CGSSp11BS70_02874 [Streptococcus pneumoniae
          SP11-BS70]
 gi|149011370|ref|ZP_01832617.1| hypothetical protein CGSSp19BS75_08167 [Streptococcus pneumoniae
          SP19-BS75]
 gi|168575048|ref|ZP_02721011.1| NADPH-dependent 7-cyano-7-deazaguanine reductase (nadph-dependent
          nitrile oxidoreductase) [Streptococcus pneumoniae
          MLV-016]
 gi|307068385|ref|YP_003877351.1| hypothetical protein SPAP_1765 [Streptococcus pneumoniae AP200]
 gi|147756315|gb|EDK63357.1| hypothetical protein CGSSp11BS70_02874 [Streptococcus pneumoniae
          SP11-BS70]
 gi|147764360|gb|EDK71291.1| hypothetical protein CGSSp19BS75_08167 [Streptococcus pneumoniae
          SP19-BS75]
 gi|183578774|gb|EDT99302.1| NADPH-dependent 7-cyano-7-deazaguanine reductase (nadph-dependent
          nitrile oxidoreductase) [Streptococcus pneumoniae
          MLV-016]
 gi|306409922|gb|ADM85349.1| hypothetical protein SPAP_1765 [Streptococcus pneumoniae AP200]
          Length = 177

 Score = 40.3 bits (93), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+               A++  +  R     E++   ++    
Sbjct: 7  LVV-FSGGQDSTTCLFWAMQHYE--------TVEAVTFAYGQRHH--LEIQIAREIAKEQ 55

Query: 81 RIAHSVVS 88
           I H ++ 
Sbjct: 56 GIRHHILD 63


>gi|317014725|gb|ADU82161.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori
           Gambia94/24]
          Length = 342

 Score = 39.9 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|33863984|ref|NP_895544.1| hypothetical protein PMT1717 [Prochlorococcus marinus str. MIT
           9313]
 gi|33635568|emb|CAE21892.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 288

 Score = 39.9 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 53/193 (27%), Gaps = 37/193 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
             ++   + LV    + VA SGG DS  L+ A+      R     +  A++    +    
Sbjct: 23  AQLQMLRKRLVSFGRVCVAYSGGVDS-ALVAAIA-----REQLGPQAFAVT---GVSPAL 73

Query: 67  KDE-VRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEHAKTINA 119
             E +       + L I H     +       S   T    A +   +  +   A++   
Sbjct: 74  APELLDEARQQAAWLEIRHQECMTQELDDPAYSSNPTDRCFACKRELHRHLGSIAQSAGG 133

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDI 177
             ++     DD  E                       I       +  P   L   +  +
Sbjct: 134 AQVVDGVNHDDLGE-------------------HRPGIEAGRQAGVRSPLAELEIGKAGV 174

Query: 178 RSFLLQRNISWCE 190
           R         W +
Sbjct: 175 RQMSRALGFPWWD 187


>gi|332290472|ref|YP_004421324.1| GMP synthase [Gallibacterium anatis UMN179]
 gi|330433368|gb|AEC18427.1| GMP synthase [Gallibacterium anatis UMN179]
          Length = 519

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 206 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 258


>gi|260913036|ref|ZP_05919521.1| GMP synthase [Pasteurella dagmatis ATCC 43325]
 gi|260633026|gb|EEX51192.1| GMP synthase [Pasteurella dagmatis ATCC 43325]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|240949033|ref|ZP_04753387.1| GMP synthase [Actinobacillus minor NM305]
 gi|240296620|gb|EER47238.1| GMP synthase [Actinobacillus minor NM305]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|223041508|ref|ZP_03611711.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus minor 202]
 gi|223017766|gb|EEF16173.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus minor 202]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|219870557|ref|YP_002474932.1| GMP synthase [Haemophilus parasuis SH0165]
 gi|254800101|sp|B8F3T2|GUAA_HAEPS RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|219690761|gb|ACL31984.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Haemophilus parasuis SH0165]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|167855486|ref|ZP_02478250.1| GMP synthase (glutamine-hydrolyzing) [Haemophilus parasuis 29755]
 gi|167853415|gb|EDS24665.1| GMP synthase (glutamine-hydrolyzing) [Haemophilus parasuis 29755]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|56695341|ref|YP_165689.1| NAD synthetase [Ruegeria pomeroyi DSS-3]
 gi|56677078|gb|AAV93744.1| glutamine-dependent NAD(+) synthetase [Ruegeria pomeroyi DSS-3]
          Length = 552

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 18/93 (19%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL--- 62
           +ES+R ++R   + A +L+ +SGG DS     AL + ++  + G      +     L   
Sbjct: 272 VESLRDYMRKTGF-AKVLLGLSGGVDS-----ALVAAIATDALGPENVRCV----MLPSE 321

Query: 63  --RETAKDEVRYVSDVCSRLRIAHSVVSWKNSK 93
               ++ D+   V      L + +  V    S+
Sbjct: 322 YTSRSSLDDAEAV---AQALGVRYDYVPISESR 351


>gi|52424827|ref|YP_087964.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mannheimia succiniciproducens MBEL55E]
 gi|81387319|sp|Q65UI1|GUAA_MANSM RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|52306879|gb|AAU37379.1| GuaA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|20093296|ref|NP_619371.1| GMP synthase subunit B [Methanosarcina acetivorans C2A]
 gi|44887900|sp|Q8THK3|GUAAB_METAC RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|19918653|gb|AAM07851.1| GMP synthase (glutamine-hydrolyzing) [Methanosarcina acetivorans
           C2A]
          Length = 305

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 21/180 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +   +     ++A+SGG DS       +  + DR         I +D  L R+   + ++
Sbjct: 15  ISQEIKEGKAIIALSGGVDSSVCAELAYRAIGDRLQP------IYIDTGLMRKGETERIK 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTINATLIMTAHT 127
           ++    + L + ++   +  +          R+A       +  + AK I A  ++    
Sbjct: 69  HIFSHMN-LHVVYAKDRFLEALAGVTDPEEKRKAVGETFIRVFEDEAKRIAADYLIQGTI 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + D++E           +    + G+   + ++    I  P     ++++R       + 
Sbjct: 128 YPDRIE------SEGGIKSHHNVGGLPSVMDFEK---IVEPIEDLYKDEVREVAWALQLP 178


>gi|86145929|ref|ZP_01064257.1| predicted ATPase [Vibrio sp. MED222]
 gi|85836384|gb|EAQ54514.1| predicted ATPase [Vibrio sp. MED222]
          Length = 231

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   + E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEYD--------EVHAITFDYGQRH--RLEIEVAESLSKDL 53

Query: 81 RIAHSVV 87
           +    V
Sbjct: 54 GVKAHKV 60


>gi|152978572|ref|YP_001344201.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus succinogenes 130Z]
 gi|226738374|sp|A6VMR9|GUAA_ACTSZ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|150840295|gb|ABR74266.1| GMP synthase, large subunit [Actinobacillus succinogenes 130Z]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|170718914|ref|YP_001784084.1| GMP synthase [Haemophilus somnus 2336]
 gi|226739628|sp|B0USI5|GUAA_HAES2 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|168827043|gb|ACA32414.1| GMP synthase, large subunit [Haemophilus somnus 2336]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|283465281|gb|ADB23123.1| GMP synthase [Rhodopirellula baltica]
          Length = 288

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 14/119 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS  +   L+  +        + S I VD+  LR+    E +
Sbjct: 151 IRKQVGDKRVICGLSGGVDSSVVAALLYKAI------GPQLSCILVDNGLLRKN---EQQ 201

Query: 72  YV-SDVCSRLRIAHSVVSWKNS--KPQTGL-MAAAREARYALISEHAKTINATLIMTAH 126
            V  +  +  +    VV  ++       G+     +  R            A  I  AH
Sbjct: 202 IVLEEFSNHFKTDLHVVEAEDRFLADLAGIDEPQEKRRRIGHAFIECFKDEAAKIEDAH 260


>gi|225851495|ref|YP_002731729.1| ExsB protein [Persephonella marina EX-H1]
 gi|254764364|sp|C0QST3|QUEC_PERMH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|225645380|gb|ACO03566.1| ExsB protein [Persephonella marina EX-H1]
          Length = 227

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
          + I++ VSGG DS  LL               K  A+S D+   +  + E+ +   +   
Sbjct: 5  SSIIILVSGGMDSAALLWLAKKEFD-------KVYAVSFDYG--QKHRVELDFAKKLTEE 55

Query: 80 LRI-AHSVVSWKNSKPQTG 97
            +  H +    + K   G
Sbjct: 56 AGVEEHFIAEVPHLKGIKG 74


>gi|255573621|ref|XP_002527733.1| GMP synthase, putative [Ricinus communis]
 gi|223532874|gb|EEF34646.1| GMP synthase, putative [Ricinus communis]
          Length = 353

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 7  ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
          E ++    ++    H++ A+SGG DS      +H  + DR         + VD+ L
Sbjct: 34 EEIKMVKGTVGPEDHVICALSGGVDSTVAATLVHKAIGDR------LHCVFVDNGL 83


>gi|182625442|ref|ZP_02953214.1| Co-activator of prophage gene expression IbrA [Clostridium
          perfringens D str. JGS1721]
 gi|177909282|gb|EDT71740.1| Co-activator of prophage gene expression IbrA [Clostridium
          perfringens D str. JGS1721]
          Length = 439

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS 57
          +I ++ SGG DS  LL  L       +    K     
Sbjct: 27 NIFISFSGGKDSTLLLHLLIDYKKKHNLTH-KIGVFH 62


>gi|149006573|ref|ZP_01830272.1| hypothetical protein CGSSp18BS74_02251 [Streptococcus pneumoniae
          SP18-BS74]
 gi|225859532|ref|YP_002741042.1| 7-cyano-7-deazaguanine reductase [Streptococcus pneumoniae 70585]
 gi|225861579|ref|YP_002743088.1| 7-cyano-7-deazaguanine reductase [Streptococcus pneumoniae
          Taiwan19F-14]
 gi|298254878|ref|ZP_06978464.1| 7-cyano-7-deazaguanine reductase [Streptococcus pneumoniae str.
          Canada MDR_19A]
 gi|298503504|ref|YP_003725444.1| NADPH-dependent 7-cyano-7-deazaguanine reductase [Streptococcus
          pneumoniae TCH8431/19A]
 gi|147761871|gb|EDK68834.1| hypothetical protein CGSSp18BS74_02251 [Streptococcus pneumoniae
          SP18-BS74]
 gi|225721293|gb|ACO17147.1| NADPH-dependent 7-cyano-7-deazaguanine reductase [Streptococcus
          pneumoniae 70585]
 gi|225727586|gb|ACO23437.1| NADPH-dependent 7-cyano-7-deazaguanine reductase [Streptococcus
          pneumoniae Taiwan19F-14]
 gi|298239099|gb|ADI70230.1| NADPH-dependent 7-cyano-7-deazaguanine reductase [Streptococcus
          pneumoniae TCH8431/19A]
 gi|327389943|gb|EGE88288.1| 7-cyano-7-deazaguanine reductase [Streptococcus pneumoniae
          GA04375]
 gi|332072931|gb|EGI83412.1| 7-cyano-7-deazaguanine reductase [Streptococcus pneumoniae
          GA17545]
 gi|332200321|gb|EGJ14394.1| 7-cyano-7-deazaguanine reductase [Streptococcus pneumoniae
          GA47368]
          Length = 177

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 20/72 (27%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISV----DHCLRETAKDEVRYVSDV 76
          ++V  SGG DS   L  A+               A++      H L      E++   ++
Sbjct: 7  LVV-FSGGQDSTTCLFWAMQHYE--------TVEAVTFAYGQHHHL------EIQIAREI 51

Query: 77 CSRLRIAHSVVS 88
               I H ++ 
Sbjct: 52 AKEQGIRHHILD 63


>gi|15827765|ref|NP_302028.1| NAD synthetase [Mycobacterium leprae TN]
 gi|221230242|ref|YP_002503658.1| NAD synthetase [Mycobacterium leprae Br4923]
 gi|18202769|sp|Q9CBZ6|NADE_MYCLE RecName: Full=Glutamine-dependent NAD(+) synthetase; AltName:
           Full=NAD(+) synthase [glutamine-hydrolyzing]
 gi|13093317|emb|CAC30413.1| possible NAD synthase [Mycobacterium leprae]
 gi|219933349|emb|CAR71557.1| possible NAD synthase [Mycobacterium leprae Br4923]
          Length = 680

 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAIS----VDHCLRETAKD 68
           +R+L YP  +++ VSGG DS   LI     +      +    A +    V    R  +  
Sbjct: 355 LRALDYP-KVVIGVSGGLDSTHALIVAARAMDREGRPRSDILAFTLPGFVT-GDRTKSN- 411

Query: 69  EVRYVSDVCSRLRIAHSVVSWKN 91
                +++C  L +  + +  ++
Sbjct: 412 ----ATELCRALGVTFTEIDIRD 430


>gi|312881365|ref|ZP_07741162.1| argininosuccinate synthase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309371005|gb|EFP98460.1| argininosuccinate synthase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 403

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 35/154 (22%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           H+L   SGG DS  LL  L           +K +A+ VD      +  +  +++ + +  
Sbjct: 19  HVLTLFSGGLDSTYLLELLKG-------QGVKVTALVVDLG----SGVDTEHLTLLTNHY 67

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYALISE------------------HAKTINATLI 122
            I   +V  + +  +  +  +A +A+   +++                   A  +    I
Sbjct: 68  EIDLKIVDAQKNFIEHSI-VSAIQAQAMYLNDYPISSSLSRPIIVSNAVKVANELGCDAI 126

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDT 156
           +  HT + Q +    R   + A +  G SG   +
Sbjct: 127 L--HTAN-QSQNSLRRI--NGAIEASGYSGFYGS 155


>gi|257456012|ref|ZP_05621221.1| GMP synthase [Enhydrobacter aerosaccus SK60]
 gi|257446601|gb|EEV21635.1| GMP synthase [Enhydrobacter aerosaccus SK60]
          Length = 527

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++  +    +L+ +SGG DS  +   LH  + +      + + + VD+ L
Sbjct: 219 LKEQIGDEQVLLGLSGGVDSSVVAALLHKAIGE------QLTCVFVDNGL 262


>gi|257066076|ref|YP_003152332.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Anaerococcus prevotii DSM 20548]
 gi|256797956|gb|ACV28611.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Anaerococcus prevotii DSM 20548]
          Length = 372

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 54/141 (38%), Gaps = 23/141 (16%)

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNS---KPQTGLMAAAREAR-------------YAL 109
           A+ +      VC+++ I +  ++++     +  T  +   ++ R             +  
Sbjct: 52  AEVDYEDAVAVCNQIGIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKA 111

Query: 110 ISEHAKTINATLIMTAHTFD-DQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
             + AK++ A  + T H    D+   ETV +R      ++   LS +    + D    + 
Sbjct: 112 FLDFAKSLGADYVATGHYARVDRSGDETVMLRGLDSNKDQTYFLSQLSQEQIKD----VL 167

Query: 167 RPFLRCRREDIRSFLLQRNIS 187
            P    ++ ++R    +  ++
Sbjct: 168 FPVGELQKSEVREIAHKYKLA 188


>gi|167623865|ref|YP_001674159.1| exsB protein [Shewanella halifaxensis HAW-EB4]
 gi|189029313|sp|B0TSC0|QUEC_SHEHH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|167353887|gb|ABZ76500.1| exsB protein [Shewanella halifaxensis HAW-EB4]
          Length = 229

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL            +   I+ D+  R   ++E+    ++ + L
Sbjct: 5   VVV-FSGGQDSTTCLIQALQQFD--------EVHGITFDYGQRH--REEIEIAKELATNL 53

Query: 81  RIAHSVVSWKNSKPQTGLMAAARE 104
           ++A   V       +  + A  R+
Sbjct: 54  KLASHKVMDVTLLNELAISALTRD 77


>gi|325105891|ref|YP_004275545.1| argininosuccinate synthase [Pedobacter saltans DSM 12145]
 gi|324974739|gb|ADY53723.1| argininosuccinate synthase [Pedobacter saltans DSM 12145]
          Length = 398

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 67/193 (34%), Gaps = 52/193 (26%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVC 77
              +++A SGG D S   +     +        ++  ++ V+      +  E++ + +  
Sbjct: 2   KKKVVLAFSGGLDTSFCCIYLSKDL-------DLEVHSVIVNTG--GFSDQELKEIEERA 52

Query: 78  SRLRIA--HSVVSWKN----------------SKPQTGLMAAAREARYALISEHAKTINA 119
             L +A  H+V + K                 +      ++A R  +   I+ +AK INA
Sbjct: 53  YSLGVASHHAVDAVKGYYDDYLKYLIFGNVLKNNTYPLSVSAERVTQATAIANYAKEINA 112

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDL---NLWISRPF--LRCRR 174
             +  AH                    G G   +   +++++    + I  P   L+  R
Sbjct: 113 DFV--AH-----------------GSTGAGNDQVRFDMIFNILIPKVGIITPIRDLKLSR 153

Query: 175 EDIRSFLLQRNIS 187
           E    +L    ++
Sbjct: 154 EAEIEYLHSHGVN 166


>gi|308389689|gb|ADO32009.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Neisseria meningitidis alpha710]
          Length = 367

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 51/196 (26%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 5   ANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 54

Query: 75  --------------------DVCSRL--RIAHSVVSWKNSKPQTGLMAAA-REARYALIS 111
                               +  ++   ++    +   ++            E ++    
Sbjct: 55  QDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +           +     + L   I  P   
Sbjct: 115 DYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIF-PLGG 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    + N+ 
Sbjct: 174 LEKPEVRRLAAEFNLP 189


>gi|307727123|ref|YP_003910336.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia sp.
           CCGE1003]
 gi|307587648|gb|ADN61045.1| asparagine synthase (glutamine-hydrolyzing) [Burkholderia sp.
           CCGE1003]
          Length = 635

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 1   MFLSPIESVRFFVR-SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M     ++V+  V+  L     + V++SGG DS  +L     +            A    
Sbjct: 237 MIERVRDAVKEAVQLRLHADVPVGVSLSGGLDSSAMLGLATELAGK------PLHAFH-- 288

Query: 60  HCLR---ETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA 101
             L        DE RY             V+S K          A
Sbjct: 289 --LSFEGAEGYDERRYAEIAAKHNNAELHVLSIKPDDLADHFEDA 331


>gi|251792295|ref|YP_003007017.1| GMP synthase [Aggregatibacter aphrophilus NJ8700]
 gi|247533684|gb|ACS96930.1| gmp synthase (glutamine-hydrolyzing) [Aggregatibacter aphrophilus
           NJ8700]
          Length = 519

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + +D+ L
Sbjct: 206 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFIDNGL 258


>gi|157921574|gb|ABW02881.1| GMP synthase [Aggregatibacter aphrophilus NJ8700]
          Length = 521

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS  + + LH  +            + +D+ L
Sbjct: 208 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVVALLLHRAIGK------NLHCVFIDNGL 260


>gi|195941501|ref|ZP_03086883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 80a]
          Length = 355

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 50/208 (24%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   ++   S+     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWV--------EDELSYIGNCPWQEDL 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------------KPQTGLMAAAREARYALISEH 113
            YV  +C++  + + +++++                    P   +    R    A   + 
Sbjct: 54  NYVEAICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKI 113

Query: 114 AKTINATLIMTAHTFDDQL-ET-VYMRSQRDYAE-KGMGLSGMCDTILYDLNLWISRPFL 170
                  L++T H    Q  E+   ++  +D  + +   LS +    +      +  P  
Sbjct: 114 --NSQYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSK----LYFPLG 167

Query: 171 RCRREDIRSFLLQRNISWCEDPSNTDDR 198
              + ++R      N+       N D R
Sbjct: 168 TLLKSEVRQIAKNINLP------NKDRR 189


>gi|297619697|ref|YP_003707802.1| Queuosine synthesis-like protein [Methanococcus voltae A3]
 gi|297378674|gb|ADI36829.1| Queuosine synthesis-like protein [Methanococcus voltae A3]
          Length = 275

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 19/80 (23%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA-----KDEVRYVSDVC 77
           LVA SGG DS    +    +             I+V+      +       + + +SD+ 
Sbjct: 58  LVAFSGGVDSTVSALIAKKLFKT--------ELITVN------SPIILNAQQKQEISDLA 103

Query: 78  SRLRIAHSVVSWKNSKPQTG 97
           ++L++ H+ +    S+ +  
Sbjct: 104 NKLQLPHNFLDVDLSEIKEN 123


>gi|121635213|ref|YP_975458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis FAM18]
 gi|166235071|sp|A1KUY0|MNMA_NEIMF RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|120866919|emb|CAM10679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis FAM18]
 gi|325130624|gb|EGC53368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis OX99.30304]
 gi|325132760|gb|EGC55443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M6190]
 gi|325136777|gb|EGC59377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M0579]
 gi|325138645|gb|EGC61204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis ES14902]
 gi|325204520|gb|ADY99973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Neisseria meningitidis M01-240355]
          Length = 367

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 51/196 (26%), Gaps = 36/196 (18%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS-- 74
             P++I+V +SGG DS      L           ++               D   Y S  
Sbjct: 5   ANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNW----------EDDDNDEYCSIK 54

Query: 75  --------------------DVCSRL--RIAHSVVSWKNSKPQTGLMAAA-REARYALIS 111
                               +  ++   ++    +   ++            E ++    
Sbjct: 55  QDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFL 114

Query: 112 EHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLR 171
           ++A    A  I T H    ++        +           +     + L   I  P   
Sbjct: 115 DYAVGQGADTIATGHYARKEVRNGVHYLLKGLDRNKDQSYFLYRLKPFQLERAIF-PLGG 173

Query: 172 CRREDIRSFLLQRNIS 187
             + ++R    + N+ 
Sbjct: 174 LEKPEVRRLAAEFNLP 189


>gi|38639627|ref|NP_943396.1| hypothetical protein LV238 [Klebsiella pneumoniae]
 gi|168998591|ref|YP_001687859.1| putative phosphoadenosine phosphosulfate reductase family protein
          [Klebsiella pneumoniae NTUH-K2044]
 gi|38016725|gb|AAR07746.1| unknown [Klebsiella pneumoniae]
 gi|238549604|dbj|BAH65955.1| hypothetical protein KP1_p031 [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 410

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          + + ++ SGG DS  LL  +  V   R     +FS + +D
Sbjct: 32 SSVCLSFSGGKDSTVLLHLVAEVARRRKR---RFSVLFID 68


>gi|5814295|gb|AAD52163.1|AF144879_2 unknown [Leptospira interrogans]
          Length = 380

 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
             IE ++   +   Y    ++ +SGG DS  L          R           VD    
Sbjct: 56  EIIEKIKLAGKGKDYDC--ILGISGGVDSSYLAYLAKKKFGLRPL------LFHVDAGW- 106

Query: 64  ETAKDEVRYVSDVCSRLRIAH--SVVSWKNSK 93
             +++ V  +  +   L++     VV+W+  K
Sbjct: 107 -NSQEAVNNIEKIVDGLKLDLITEVVNWEEMK 137


>gi|255086163|ref|XP_002509048.1| predicted protein [Micromonas sp. RCC299]
 gi|226524326|gb|ACO70306.1| predicted protein [Micromonas sp. RCC299]
          Length = 478

 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 59/209 (28%), Gaps = 45/209 (21%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE--TA---KDEVRYVSD 75
            + V +SGG DS   L  L +   D     ++   +      R    A   +D++     
Sbjct: 17  KVAVLLSGGVDSSVALTLLKAAGHDCVAFYLQIWFV---EDFRNTWDACPWEDDLNVARG 73

Query: 76  VCSRLRIAHSVVSWKNS----KPQTGLMAAAR------------EARYALISEHAKTINA 119
           VC  L +   VV   N       +  +   +R              ++   ++  +T  A
Sbjct: 74  VCEHLDVPLEVVPLTNQYWDLVVKHSIEQISRGRTPNPDMLCNSRVKFGAFTDWLETNRA 133

Query: 120 ---TLIMTAHTFD-DQLETVYMRSQRD-YAEKGMGLSG-----MCDTILYDLNLWISR-- 167
                + + H    D+++ +   +        G          M      D   +++   
Sbjct: 134 GEFHRVASGHYAAMDRVQGILADTLHGDDGMNGTSRRHPCRLIMSGDARKDQTYFLAHLS 193

Query: 168 ---------PFLRCRREDIRSFLLQRNIS 187
                    P     +  IR       + 
Sbjct: 194 QRQLAALTFPIGGLPKTQIREIARSAGLP 222


>gi|302524099|ref|ZP_07276441.1| GMP synthase domain-containing protein [Streptomyces sp. AA4]
 gi|302432994|gb|EFL04810.1| GMP synthase domain-containing protein [Streptomyces sp. AA4]
          Length = 518

 Score = 39.9 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 26/197 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S ++     V + +     +  +SGG DS     A+ + L  R+ G  + + + VDH  L
Sbjct: 203 SIVDEQVAAVAAQIGDGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLL 256

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARY---ALI 110
           R   + +V    D  +   +    V  +          + P+       RE         
Sbjct: 257 RAGERTQVE--RDFVAATGVNLVTVDARERFLNALAGVTDPEQKRKIIGREFIRVFEQAE 314

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            +     +   ++    + D +E+             +        +  DL   +  P  
Sbjct: 315 RDLKAQGDYRFLVQGTLYPDVVES-----GGGEGTANIKSHHNVGGLPDDLQFELVEPLR 369

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   L+  + 
Sbjct: 370 LLFKDEVRRVGLELGLP 386


>gi|116748019|ref|YP_844706.1| NAD+ synthetase [Syntrophobacter fumaroxidans MPOB]
 gi|116697083|gb|ABK16271.1| NH(3)-dependent NAD(+) synthetase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 552

 Score = 39.9 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 4   SPIESVRFFVRSLVYPAHI---LVAVSGGSDS---MGLLIALHSVLSDRSFG-KIKFSAI 56
             IE++   +R  V        +V +SGG DS   + L +      +    G    F+A 
Sbjct: 270 EVIEALVLGLRDYVRKNRFGKAVVGLSGGVDSALTVCLAVLALGAENVLGVGMPGPFNA- 328

Query: 57  SVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSW 89
                    + ++     ++  RL IA   V  
Sbjct: 329 -------PESLEDA---KELARRLGIAFETVPI 351


>gi|217032089|ref|ZP_03437589.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128]
 gi|216946237|gb|EEC24845.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128]
          Length = 342

 Score = 39.9 bits (92), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQTGLMA--AARE--------------ARYALISEHAKTIN 118
             C  L I   V+ ++            +A E               ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|325285141|ref|YP_004260931.1| GMP synthase (glutamine-hydrolyzing) [Cellulophaga lytica DSM 7489]
 gi|324320595|gb|ADY28060.1| GMP synthase (glutamine-hydrolyzing) [Cellulophaga lytica DSM 7489]
          Length = 511

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E     ++  +    +++ +SGG DS    + LH  +            I V++ L
Sbjct: 201 VEETVEALQQKIGDDKVVLGLSGGVDSSVAAMLLHKAIGK------NLYCIFVNNGL 251


>gi|255522750|ref|ZP_05389987.1| hypothetical protein LmonocFSL_16333 [Listeria monocytogenes FSL
          J1-175]
          Length = 192

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +I+V+ SGG DS  +L  +   +   +  K K     +D+
Sbjct: 3  DNIIVSFSGGKDSAVMLHLMIDYMRKNNIRK-KIYVYHLDY 42


>gi|325981539|ref|YP_004293941.1| NAD+ synthetase [Nitrosomonas sp. AL212]
 gi|325531058|gb|ADZ25779.1| NAD+ synthetase [Nitrosomonas sp. AL212]
          Length = 543

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDR 46
           VR +VR   +P  +L+ +SGG DS + L IA+ ++ +D+
Sbjct: 266 VRDYVRKNAFPG-VLLGLSGGVDSALALAIAVDALGADQ 303


>gi|254852639|ref|ZP_05241987.1| conserved hypothetical protein [Listeria monocytogenes FSL
          R2-503]
 gi|300765450|ref|ZP_07075432.1| conserved hypothetical protein [Listeria monocytogenes FSL
          N1-017]
 gi|258605955|gb|EEW18563.1| conserved hypothetical protein [Listeria monocytogenes FSL
          R2-503]
 gi|300513887|gb|EFK40952.1| conserved hypothetical protein [Listeria monocytogenes FSL
          N1-017]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +I+V+ SGG DS  +L  +   +   +  K K     +D+
Sbjct: 22 DNIIVSFSGGKDSAVMLHLMIDYMRKNNIRK-KIYVYHLDY 61


>gi|226223911|ref|YP_002758018.1| hypothetical protein Lm4b_01318 [Listeria monocytogenes
          Clip81459]
 gi|254824631|ref|ZP_05229632.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J1-194]
 gi|254932375|ref|ZP_05265734.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|225876373|emb|CAS05082.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
          CLIP 80459]
 gi|293583931|gb|EFF95963.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593869|gb|EFG01630.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J1-194]
 gi|328475150|gb|EGF45934.1| hypothetical protein LM220_00910 [Listeria monocytogenes 220]
 gi|332311753|gb|EGJ24848.1| Co-activator of prophage gene expression [Listeria monocytogenes
          str. Scott A]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +I+V+ SGG DS  +L  +   +   +  K K     +D+
Sbjct: 22 DNIIVSFSGGKDSAVMLHLMIDYMRKNNIRK-KIYVYHLDY 61


>gi|189426122|ref|YP_001953299.1| tRNA-specific 2-thiouridylase MnmA [Geobacter lovleyi SZ]
 gi|226704771|sp|B3E966|MNMA_GEOLS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|189422381|gb|ACD96779.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Geobacter lovleyi SZ]
          Length = 354

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 58/205 (28%), Gaps = 62/205 (30%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKF---------SAISVDHCLRETAKDEV 70
           + I VA+SGG DS  +   L     +     ++          +         + A    
Sbjct: 2   SRIAVAMSGGVDSSVVAALLQQQGHEVIGITMQLFEPCSSGPGTPAH------DGA---- 51

Query: 71  RYVSDVCSRLRIAHSVVSWK---------------NSKPQTGLMAAA-REARYALISEHA 114
                V ++L I H ++  +                            R  ++ L+ E A
Sbjct: 52  ----QVAAQLGIPHHLLRLEPQFRDLIIDNFIDQYRQGQTPNPCILCNRLIKFGLLLEQA 107

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR------- 167
           + + A L+ T H             +R     G+           D + ++         
Sbjct: 108 RELGAELLATGH-----------YVRRTVGPDGLCHLRTAANQAKDQSYFLYSLSQQQLR 156

Query: 168 ----PFLRC-RREDIRSFLLQRNIS 187
               P      ++++RS      ++
Sbjct: 157 QVIFPLGEIASKDEVRSLATGFGLA 181


>gi|46907536|ref|YP_013925.1| hypothetical protein LMOf2365_1327 [Listeria monocytogenes
          serotype 4b str. F2365]
 gi|47094290|ref|ZP_00231995.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
          H7858]
 gi|46880804|gb|AAT04102.1| conserved hypothetical protein [Listeria monocytogenes serotype
          4b str. F2365]
 gi|47017334|gb|EAL08162.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
          H7858]
 gi|328468596|gb|EGF39596.1| hypothetical protein LM1816_15202 [Listeria monocytogenes 1816]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +I+V+ SGG DS  +L  +   +   +  K K     +D+
Sbjct: 22 DNIIVSFSGGKDSAVMLHLMIDYMRKNNIRK-KIYVYHLDY 61


>gi|328911421|gb|AEB63017.1| 7-cyano-7-deazaguanine synthase [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   LL AL +          +   ++  +  R    +E+     +  +L
Sbjct: 15 VVV-FSGGQDSTTCLLWALQNFE--------EVETVTFHYNQRHQ--EEIDVAKSIAEKL 63

Query: 81 RIAHSVVS 88
           + + ++ 
Sbjct: 64 GVKNHLLD 71


>gi|322514531|ref|ZP_08067565.1| GMP synthase [Actinobacillus ureae ATCC 25976]
 gi|322119544|gb|EFX91629.1| GMP synthase [Actinobacillus ureae ATCC 25976]
          Length = 566

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 253 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 305


>gi|307263231|ref|ZP_07544851.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871448|gb|EFN03172.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|296170500|ref|ZP_06852087.1| NAD synthetase [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894852|gb|EFG74574.1| NAD synthetase [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 680

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           +  +   +R+L +P  I++ VSGG DS   LI     +      +    A +    L   
Sbjct: 348 VAGLEQRLRALNFP-KIVIGVSGGLDSTHALIVAARAMDREQRPRSDILAFT----LPGF 402

Query: 66  A--KDEVRYVSDVCSRLRIAHSVVSWKN 91
           A      R   ++C  L +  S +    
Sbjct: 403 ATGDRTKRNAIELCRALGVTFSEIDITE 430


>gi|190149906|ref|YP_001968431.1| GMP synthase (glutamine-hydrolyzing) [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|226738372|sp|B3H120|GUAA_ACTP7 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|189915037|gb|ACE61289.1| GMP synthase (glutamine-hydrolyzing) [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|308173343|ref|YP_003920048.1| QueC [Bacillus amyloliquefaciens DSM 7]
 gi|189039060|sp|A7Z3Y6|QUEC_BACA2 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|307606207|emb|CBI42578.1| QueC [Bacillus amyloliquefaciens DSM 7]
 gi|328553730|gb|AEB24222.1| QueC [Bacillus amyloliquefaciens TA208]
          Length = 219

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 12/68 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   LL AL +          +   ++  +  R    +E+     +  +L
Sbjct: 7  VVV-FSGGQDSTTCLLWALQNFE--------EVETVTFHYNQRHQ--EEIDVAKSIAEKL 55

Query: 81 RIAHSVVS 88
           + + ++ 
Sbjct: 56 GVKNHLLD 63


>gi|165976006|ref|YP_001651599.1| GMP synthase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|303251542|ref|ZP_07337716.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|303252222|ref|ZP_07338390.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307245453|ref|ZP_07527541.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247566|ref|ZP_07529610.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307251352|ref|ZP_07533268.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252146|ref|ZP_07534045.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254407|ref|ZP_07536245.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256617|ref|ZP_07538397.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258866|ref|ZP_07540598.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261049|ref|ZP_07542731.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|226738373|sp|B0BUF0|GUAA_ACTPJ RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|165876107|gb|ABY69155.1| GMP synthase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|302649005|gb|EFL79193.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|302649540|gb|EFL79722.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306853794|gb|EFM86011.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855931|gb|EFM88090.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856593|gb|EFM88733.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306860446|gb|EFM92460.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862706|gb|EFM94662.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864865|gb|EFM96768.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867217|gb|EFM99073.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869351|gb|EFN01146.1| GMP synthase [glutamine-hydrolyzing] [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|46143711|ref|ZP_00134556.2| COG0519: GMP synthase, PP-ATPase domain/subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 478

 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     ++  V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 165 NIIEDAVARIKEQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 217


>gi|61657937|ref|NP_001013413.1| argininosuccinate synthase [Gallus gallus]
 gi|82197765|sp|Q5ZJ23|ASSY_CHICK RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|53133882|emb|CAG32270.1| hypothetical protein RCJMB04_21j5 [Gallus gallus]
          Length = 416

 Score = 39.9 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 56/187 (29%), Gaps = 44/187 (23%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVR---------- 71
           +++A SGG D+  +L+ L     ++ +  I F A      + +T   +            
Sbjct: 8   VVLAYSGGLDTSCILVWLK----EQGYTVIAFLA-----NIGQTEDFDAAQKKALALGAK 58

Query: 72  --YVSDVCSRLRIAHSVVSWKNSKPQTGLM-------AAAREARYALISEHAKTINATLI 122
             Y+ DVC           W   +             A AR      +   A+   A  I
Sbjct: 59  KVYIQDVCREF---VEDFIWPAVRANALYEDRYMLGSALARPCIARHLVLIAQEEGARYI 115

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSF 180
               T   +DQ+        R           +     + +  +  R F    R ++  +
Sbjct: 116 AHGATGKGNDQV--------RFELGCYALCPSIKVIAPWRMPEFYQR-FPG--RRELMEY 164

Query: 181 LLQRNIS 187
             +  I 
Sbjct: 165 AQKHGIP 171


>gi|292492798|ref|YP_003528237.1| argininosuccinate synthase [Nitrosococcus halophilus Nc4]
 gi|291581393|gb|ADE15850.1| argininosuccinate synthase [Nitrosococcus halophilus Nc4]
          Length = 405

 Score = 39.9 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 55/193 (28%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-----AKDEVR-- 71
             +++A SGG D S+     L  +        + F+A   D    E      AK E    
Sbjct: 5   KKVVLAYSGGLDTSV----ILKWLRETYGCEVVTFTA---DIGQGEEVAPARAKAEALGV 57

Query: 72  ---YVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAREARYALISEHAKTINATLIMT 124
              YV ++C      +    ++ +    G      + AR      ++E A   +A  I  
Sbjct: 58  KEIYVEELCEEFARDYVFPMFRANTLYEGEYLLGTSIARPLIAKRLAEIASETSADAI-- 115

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC----------RR 174
           AH                    G G     D + ++L  +  RP ++            R
Sbjct: 116 AH-----------------GATGKG----NDQVRFELGAYALRPDIQVIAPWREWDLTSR 154

Query: 175 EDIRSFLLQRNIS 187
           E + ++    +I 
Sbjct: 155 EKLLTYAETHDIP 167


>gi|149246956|ref|XP_001527903.1| GMP synthase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146447857|gb|EDK42245.1| GMP synthase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 530

 Score = 39.9 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 4   SPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           + I++    +R LV P A ++ AVSGG DS      +   + DR      F AI VD
Sbjct: 212 NFIDTEIARIRKLVGPTAEVIGAVSGGVDSTVGAKIMKEAIGDR------FHAIYVD 262


>gi|257126811|ref|YP_003164925.1| GMP synthase [Leptotrichia buccalis C-1013-b]
 gi|257050750|gb|ACV39934.1| GMP synthase, large subunit [Leptotrichia buccalis C-1013-b]
          Length = 514

 Score = 39.9 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           S I     F++  V   H+L+A+SGG DS    + +++ +  +
Sbjct: 199 SFIAEKTKFIKKTVGDEHVLLALSGGVDSSVAAVLINNAIGHQ 241


>gi|323702070|ref|ZP_08113738.1| NAD+ synthetase [Desulfotomaculum nigrificans DSM 574]
 gi|323532952|gb|EGB22823.1| NAD+ synthetase [Desulfotomaculum nigrificans DSM 574]
          Length = 243

 Score = 39.9 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 50/182 (27%), Gaps = 48/182 (26%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAKDEVRYVSDVCSRLR 81
           +V +SGG DS  +         +   G I         C        + + V++    L 
Sbjct: 26  VVGLSGGIDSAVVAALCKRAFPENVLGVIMP-------CFSNPEDAKDAKLVAET---LG 75

Query: 82  IAHSVV-------------SWKNSKPQTGLMAAAR---EARYALISEHAKTINATLIMTA 125
           + +  V             + ++   ++  MA A      R   +   A   N  ++ T 
Sbjct: 76  VPYEEVVLNDPFAWFVRRFTGQDYDVRSNDMAIANIKPRLRMITLYYFAAKNNYLVVGTG 135

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
               ++ ETV     +                 Y        P     +  +R    +  
Sbjct: 136 ----NKAETVVGYFTK-----------------YGDGGVDILPIANLVKSQVRELAQELG 174

Query: 186 IS 187
           + 
Sbjct: 175 VP 176


>gi|268607984|ref|ZP_06141715.1| GMP synthase [Ruminococcus flavefaciens FD-1]
          Length = 516

 Score = 39.9 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL- 62
             IE+    +R  +    +++ +SGG DS      L   +        + + + VD  L 
Sbjct: 199 DFIETTVAKLREQIGDKKVILGLSGGVDSSVAAGLLSRAVGK------QLTCVFVDQGLM 252

Query: 63  RETAKDEVRYVSDVCSRL 80
           R   KDE  +V +  ++L
Sbjct: 253 R---KDEGDFVEETFTKL 267


>gi|94500712|ref|ZP_01307242.1| putative regulator protein [Oceanobacter sp. RED65]
 gi|94427267|gb|EAT12247.1| putative regulator protein [Oceanobacter sp. RED65]
          Length = 220

 Score = 39.9 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          +++  SGG DS      L+ V+ +         A++ ++   +    EV     VC +L 
Sbjct: 7  VVI-YSGGMDS---FTLLNKVVKE----GYDVYALTFNYG--QKHVKEVEVAKTVCQQLN 56

Query: 82 IAHSVVSW 89
          + H ++  
Sbjct: 57 VPHKILDI 64


>gi|326524305|dbj|BAK00536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 542

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E ++     +    H++ A+SGG DS      +H+ + DR         + VD+ L
Sbjct: 223 EEIKTIQSMVGPDEHVICALSGGVDSTVAATLVHNAIGDR------LHCVFVDNGL 272


>gi|262365358|gb|ACY61915.1| hypothetical protein YPD8_1230 [Yersinia pestis D182038]
          Length = 199

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 262 TLLFYLLRVSAAICGGQISLPGYRSMERVML---FLKSGKRGCVSIGRVVIDRRANFLWI 318
                +LR   A  G    +P    ++R+ L     +      + IG   + R    L++
Sbjct: 2   AKRAAILRRWLASLG--APMPSQSQLQRLWLEVAMARQDAEPQLMIGTRQVRRFRQHLYL 59

Query: 319 TRAVRNLPT 327
              +  + T
Sbjct: 60  LMPLAEITT 68


>gi|187776915|ref|ZP_02993388.1| hypothetical protein CLOSPO_00454 [Clostridium sporogenes ATCC
           15579]
 gi|187775574|gb|EDU39376.1| hypothetical protein CLOSPO_00454 [Clostridium sporogenes ATCC
           15579]
          Length = 881

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 19/134 (14%)

Query: 121 LIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGM-CDTILYDLNLWISRPFLRCRREDI-- 177
            +   H  DD L+ + MR++R      + L G    +I  ++ +          +++I  
Sbjct: 53  KLHLGHALDDTLQDILMRTKRMQGFSTLWLPGQDHASIATEVKVENELLKEGIVKKEIGR 112

Query: 178 RSFLLQRNISW-CEDPSNTDDRFERVRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAVAM 236
            +FL +    W   D       + R ++R  ++ +   +L    ++F  +  +++ AV  
Sbjct: 113 EAFLEK---VWEWTDE------Y-RGKIRNQIKKLGC-SLDFTRERFT-MDEQLDKAVKH 160

Query: 237 LIPKYLTVHMRSII 250
               ++ ++   +I
Sbjct: 161 F---FVKLYNEGLI 171


>gi|113953741|ref|YP_729683.1| PP-loop family protein [Synechococcus sp. CC9311]
 gi|113881092|gb|ABI46050.1| PP-loop family protein [Synechococcus sp. CC9311]
          Length = 275

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 37/193 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET- 65
           + ++    SL     + VA SGG DS  +    H  L +++       AI+    +  + 
Sbjct: 14  DVLKRLRDSLASQQQVCVAYSGGVDSSLVAAIAHEQLGEQAL------AIT---GVSPSL 64

Query: 66  AKDEVRYVSDVCSRLRIAH-SVVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINA 119
           A   +       + L + H  V++ +   P           A +   +  ++  A   N 
Sbjct: 65  APHLLLEARQQAAWLGMRHQEVLTLELEDPDYTSNPQDRCYACKRELHRHLAPIAAEANG 124

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDI 177
            L++     DD                   L      I       +  P   L   +  +
Sbjct: 125 ALVLDGVNQDD-------------------LGDHRPGIAAAKEAGVRSPLAELGITKATV 165

Query: 178 RSFLLQRNISWCE 190
           R         W +
Sbjct: 166 RRLSWALGFPWWD 178


>gi|145220392|ref|YP_001131101.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|226739666|sp|A4SGJ0|GUAA_PROVI RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|145206556|gb|ABP37599.1| GMP synthase (glutamine-hydrolyzing) [Chlorobium phaeovibrioides
           DSM 265]
          Length = 513

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 64/186 (34%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R       ++  +SGG DS    + +   +        +   + VD+  LR+    E  
Sbjct: 214 IRERAGNNTVICGISGGVDSTVAAVLVSKAIGK------QLHCVFVDNGLLRKN---EAE 264

Query: 72  YVSDVCSRLRIAHSVVSWKN-----SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            V      L +  ++   ++      K         +      I    + I+    +   
Sbjct: 265 KVMQFLKPLGLKVTLADSRDLFLTRLKGVASPEKKRKIIGRTFIRVFEEHIHEEKFLVQG 324

Query: 127 TF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           T   D +E+V ++   +  +    + G+       + L +  P     ++++R+   +  
Sbjct: 325 TLYPDVIESVSVKGPSETIKSHHNVGGL----PKRMKLKLIEPLRELFKDEVRAVGRELG 380

Query: 186 ISWCED 191
           I+  ED
Sbjct: 381 IA--ED 384


>gi|313682542|ref|YP_004060280.1| preq(0) biosynthesis protein quec [Sulfuricurvum kujiense DSM
          16994]
 gi|313155402|gb|ADR34080.1| preQ(0) biosynthesis protein QueC [Sulfuricurvum kujiense DSM
          16994]
          Length = 221

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 27 SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          SGG DS  +   + S          +  A+  ++  R  AK+   +  ++C  L +
Sbjct: 10 SGGMDSTLVAYIMRS-------RGYEIVALHFNYGQRTVAKELSCF-REICKDLGV 57


>gi|303239981|ref|ZP_07326503.1| protein of unknown function DUF71 ATP-binding region [Acetivibrio
          cellulolyticus CD2]
 gi|302592460|gb|EFL62186.1| protein of unknown function DUF71 ATP-binding region [Acetivibrio
          cellulolyticus CD2]
          Length = 319

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V  SGG DS  LL  +  V         K  A++VD+   E      +   +    L +
Sbjct: 23 VVMYSGGKDSTYLLYLMKKVYQK------KVIAVTVDNGF-EDDFTWKKM-GNALEVLDV 74

Query: 83 AHSVVS 88
           H V+ 
Sbjct: 75 PHEVIK 80


>gi|218549809|ref|YP_002383600.1| immunoglobulin-binding regulator [Escherichia fergusonii ATCC
          35469]
 gi|218357350|emb|CAQ89987.1| immunoglobulin-binding regulator [Escherichia fergusonii ATCC
          35469]
          Length = 416

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 1  MFLSPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          +F++ +++ R  +   +     + V+ SGG DS  +L     +    +    K   + +D
Sbjct: 21 LFINVLDAARERIHWTLKNLDRVCVSFSGGKDSGVMLHLTAQLARQLNK---KIFVLFID 77


>gi|213965071|ref|ZP_03393269.1| sulfate adenylyltransferase subunit 2 [Corynebacterium amycolatum
           SK46]
 gi|213952185|gb|EEB63569.1| sulfate adenylyltransferase subunit 2 [Corynebacterium amycolatum
           SK46]
          Length = 308

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HC 61
             I+ +R        PA +    SGG DS+ +L  +    +      I    + VD  H 
Sbjct: 23  EAIDIIRQTAGQFDRPALL---FSGGKDSVVVLELVKRAFAP---AGIPLELLHVDTGHN 76

Query: 62  LRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA 102
                 + + +   + ++  I   V   ++      L   A
Sbjct: 77  F----PEVIEFRDKIAAQPGIKLHVAKVQDWIDSGVLTERA 113


>gi|73667687|ref|YP_303702.1| succinoglycan biosynthesis regulator [Methanosarcina barkeri str.
          Fusaro]
 gi|110816232|sp|Q46G70|QUEC_METBF RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=Archaeosine biosynthesis protein queC; AltName:
          Full=PreQ(0) synthase
 gi|72394849|gb|AAZ69122.1| succinoglycan biosynthesis regulator [Methanosarcina barkeri str.
          Fusaro]
          Length = 231

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +S G DS+  L              I+  AI+ D+  R   + E+ Y   VC    I H 
Sbjct: 7  LSSGLDSVAALAIAAE------DFDIEM-AITFDYGQRA-REREIEYSRKVCEYFGIEHR 58

Query: 86 VVSWK 90
          V+   
Sbjct: 59 VIKLD 63


>gi|15669543|ref|NP_248355.1| NH(3)-dependent NAD+ synthetase NadE [Methanocaldococcus
          jannaschii DSM 2661]
 gi|6093468|sp|Q58747|NADE_METJA RecName: Full=Probable NH(3)-dependent NAD(+) synthetase
 gi|1591995|gb|AAB99363.1| NH(3)-dependent NAD+ synthetase (nadE) [Methanocaldococcus
          jannaschii DSM 2661]
          Length = 259

 Score = 39.9 bits (92), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 18/90 (20%)

Query: 4  SPIESVRFFVRSLVYPAH---ILVAVSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVD 59
            +  +  F+R  V  A+   ++V +SGG DS         ++  D+  G I        
Sbjct: 9  EIVNKITKFIREKVEEANANGVVVGLSGGIDSSVTAYLCVKALGKDKVLGLIM------- 61

Query: 60 HCLRETAK---DEVRYVSDVCSRLRIAHSV 86
                      +V +   V   L I + +
Sbjct: 62 ----PEKNTNPKDVEHAKMVAENLGIKYII 87


>gi|325577519|ref|ZP_08147881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325160623|gb|EGC72747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 384

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 51/197 (25%), Gaps = 45/197 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYV------ 73
             ++  +SGG DS      L           +K               D+  Y       
Sbjct: 25  KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW----------EEDDDTDYCTAAADL 74

Query: 74  ---SDVCSRLRIAHSVVSWKNSKPQTGLMA------AAR----------EARY-ALISEH 113
                VC +L I    +++                 A R          E ++ A +   
Sbjct: 75  ADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYA 134

Query: 114 AKTINATLIMTAH----TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF 169
           A+ + A  I T H      DD  E    +  R           +       +   +  P 
Sbjct: 135 AEDLGAHYIATGHYVRRAGDD--ENA--KLLRGLDANKDQSYFLYTLSHKQVGQSLF-PV 189

Query: 170 LRCRREDIRSFLLQRNI 186
               +  +R+   +  +
Sbjct: 190 GEIEKPIVRAIAEELGL 206


>gi|262039942|ref|ZP_06013212.1| immunoglobulin-binding regulator A [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259042690|gb|EEW43691.1| immunoglobulin-binding regulator A [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 410

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          + + ++ SGG DS  LL  +  V   R     +FS + +D
Sbjct: 32 SSVCLSFSGGKDSTVLLHLVAEVARRRKR---RFSVLFID 68


>gi|284799636|ref|ZP_05984454.2| sulfate adenylyltransferase, small subunit [Neisseria subflava
           NJ9703]
 gi|284797580|gb|EFC52927.1| sulfate adenylyltransferase, small subunit [Neisseria subflava
           NJ9703]
          Length = 379

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLS-DRSFGKIKFSAISVD--HCLRET 65
           +R  + +   PA +    SGG DS+ LL         +    K+ F  + VD  H     
Sbjct: 94  IREVIANAQNPALL---FSGGKDSVVLLALAVKAFQIEGRPLKLPFKLLHVDTGHNY--- 147

Query: 66  AKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGL----MAAAREARYAL-ISEHAKTINAT 120
             + +++  D  +R  +   V S + S  +  +       +R A  A+ + E  +     
Sbjct: 148 -PEVIQFRDDTVARTGVQLVVGSVEESIRKGSVVLRRETDSRNAAQAVTLVETIEEQGFD 206

Query: 121 LIMTAHTFD 129
            +M     D
Sbjct: 207 ALMGGARRD 215


>gi|170692027|ref|ZP_02883191.1| Sulfate adenylyltransferase [Burkholderia graminis C4D1M]
 gi|170143311|gb|EDT11475.1| Sulfate adenylyltransferase [Burkholderia graminis C4D1M]
          Length = 320

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 26  VSGGSDS-MGLLIALHSV-LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS + L +AL +  +       + F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLALALKAFGIGANRKTVLPFPLVHIDTGHNYDEVIDFRDRRAKEIGAELV 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K    +      +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIKRGTVRLRRETDSRNAAQAVTLLETIEQHGYTALIGGARRD 156


>gi|126658519|ref|ZP_01729667.1| hypothetical protein CY0110_21380 [Cyanothece sp. CCY0110]
 gi|126620261|gb|EAZ90982.1| hypothetical protein CY0110_21380 [Cyanothece sp. CCY0110]
          Length = 276

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 53/175 (30%), Gaps = 33/175 (18%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-AKDEVRYVSDVCSRLR 81
           L+A SGG DS  +    + VL DR+   +  +A+        +   +E+       + + 
Sbjct: 20  LIAYSGGIDSTLVAKVAYDVLGDRA---LAVTAV------SPSLLPEELEDAKIQAATIG 70

Query: 82  IAHSVVSWKNSKPQT------GLMAAAREARYALISEHAKTINATLIMTAHTFDDQLETV 135
           I H +V+                    +   +  +   A       ++     DD     
Sbjct: 71  IPHELVNTHEMDNPNYTSNPINRCYFCKSELHDTLKPLALKRGYPYVVDGVNADD----- 125

Query: 136 YMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCE 190
            ++  R       G+    +         +        + ++R       +SW +
Sbjct: 126 -LQDYRP------GIQAAKERSARSPLAEV-----GITKLEVRQLSQALGLSWWD 168


>gi|15602158|ref|NP_245230.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|24211768|sp|Q9CNX8|GUAA_PASMU RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|12720526|gb|AAK02377.1| GuaA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 523

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           + IE     +++ V    +++ +SGG DS    + LH  +            + VD+ L
Sbjct: 210 NIIEDAVARLKAQVGDDEVILGLSGGVDSSVTALLLHRAIGK------NLHCVFVDNGL 262


>gi|325916006|ref|ZP_08178299.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537816|gb|EGD09519.1| GMP synthase (glutamine-hydrolyzing) [Xanthomonas vesicatoria ATCC
           35937]
          Length = 521

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 23/186 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LR-ETAKDEV 70
           VR+ V    +++ +SGG DS  +   LH  + D+       + + VD   LR +     +
Sbjct: 217 VRAQVGDDEVILGLSGGVDSSVVAALLHRAIGDK------LNCVFVDTGLLRWQEGDQVM 270

Query: 71  RYVSDVCSRLRIAHSVV----SWKNSKPQTGLMAAAREARYALISEHAKTI-----NATL 121
                    + +    V     +           A R+    L  +          NA  
Sbjct: 271 AM---FAEHMGVKVIRVNAADRYFAKLEGVSDPEAKRKIIGNLFVDIFDEESGKLANAKW 327

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
           +     + D +E+      +      +        +   + L +  P     ++++R   
Sbjct: 328 LAQGTIYPDVIES---AGSKTGKAHVIKSHHNVGGLPEHMKLGLVEPLRELFKDEVRRLG 384

Query: 182 LQRNIS 187
           ++  + 
Sbjct: 385 VELGLP 390


>gi|298243232|ref|ZP_06967039.1| argininosuccinate synthase [Ktedonobacter racemifer DSM 44963]
 gi|297556286|gb|EFH90150.1| argininosuccinate synthase [Ktedonobacter racemifer DSM 44963]
          Length = 435

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           I +A SGG DS      L   L++  +   K  AISVD    E    E+         L 
Sbjct: 39  IALAFSGGLDST-----LCVKLAEAKYHASKLYAISVDVGQGEE---ELNMGIQRAEMLG 90

Query: 82  IAHSVVSWKNS 92
           I   V+  +  
Sbjct: 91  ITPIVLDAREE 101


>gi|257465382|ref|ZP_05629753.1| sulfate adenylyltransferase subunit 2 [Actinobacillus minor 202]
 gi|257451042|gb|EEV25085.1| sulfate adenylyltransferase subunit 2 [Actinobacillus minor 202]
          Length = 308

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ LL     +   +     + F  + +D  H   E  +     V  + ++L I
Sbjct: 37  FSGGKDSVVLLALARKAFQLEGRELVLPFPLVHIDTGHNYPEVIQFRDEQVKKLNAKLVI 96

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S +           +R A  A+ + E  +      +M     D
Sbjct: 97  GHVEDSIEKGTVVLRKETDSRNAAQAVTLLETIEANGFDALMGGARRD 144


>gi|223039865|ref|ZP_03610149.1| ExsB protein [Campylobacter rectus RM3267]
 gi|222878874|gb|EEF13971.1| ExsB protein [Campylobacter rectus RM3267]
          Length = 223

 Score = 39.9 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 27 SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
          SGG DS      L +VL+ R     +  A+  D+  R   ++++ +   +C R+ 
Sbjct: 9  SGGMDST-----LCAVLAKR--AGYEIVALHFDYGQRTMEREKLAF-EQICERIG 55


>gi|262306057|gb|ACY45621.1| gln amidotransferase [Ischnura verticalis]
          Length = 197

 Score = 39.9 bits (92), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           ++ +V  + +L+  SGG DS      L      ++  + +   + +D+   R+  + +V 
Sbjct: 37  IKEIVGTSQVLLLASGGVDSTVCAALL-----RKAIPEDQLITVHIDNGFMRKNDRSDVD 91

Query: 72  Y-VSDVCSRLRI 82
             +  +C +L+I
Sbjct: 92  QTLKKICPKLKI 103


>gi|259487237|tpe|CBF85751.1| TPA: arginosuccinate synthetase (Eurofung) [Aspergillus nidulans
           FGSC A4]
          Length = 416

 Score = 39.9 bits (92), Expect = 0.80,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 61/192 (31%), Gaps = 48/192 (25%)

Query: 19  PAHILVAVSGGSD-SMGLLIAL----------HSVLSDRSFGKI-----KFSAI---SVD 59
              I VA SGG D S+ L   +            V  +  F  I     K  A+    VD
Sbjct: 3   KGKICVAFSGGLDTSVILKWLIDEGYEVVAFTADVGQEEDFAAIKEKALKLGAVKAEVVD 62

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINA 119
             LR        +V ++C    IA + +        T L   AR        E AK    
Sbjct: 63  --LRRE------FVEELCFPA-IACNAIYENVYLLGTSL---ARPVIARAQIEVAKREGC 110

Query: 120 TLIMTAHT--FDDQL--ETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
             +    T   +DQ+  E  +   Q D       ++   D   Y+             R 
Sbjct: 111 FAVSHGCTGKGNDQVRFELAFYALQPDIKV----IAPWRDPRFYER---------FAGRN 157

Query: 176 DIRSFLLQRNIS 187
           D+ ++  ++ I 
Sbjct: 158 DLLAYAAEKGIP 169


>gi|323507819|emb|CBQ67690.1| related to trna methyltransferase [Sporisorium reilianum]
          Length = 479

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 61/221 (27%), Gaps = 53/221 (23%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI------SVDHC- 61
           VR           + VA+SGG DS    + L               A+       +D   
Sbjct: 71  VRLPPHGPQKGDRVTVALSGGVDSSVTALLLAQA------SHYDLHAVFMRNWNELDESG 124

Query: 62  -LRETA---------KDEVRYVSDVCSRLR-IAHSVVSWKNSKPQTGLMAAAREAR---- 106
            ++  +         +D    V  VC  L  +  S+V             A  E R    
Sbjct: 125 TMQPGSGGATGCTWQRDWHD-VQAVCRHLGNMPVSMVDLSREYWTQVFEPALDEWRQGTT 183

Query: 107 ----------------YALISEHAKTINATLIMTAHTF----DDQLETVYMRSQRDYAEK 146
                              +    +    + + T H       +Q   + MR++    ++
Sbjct: 184 PNPDVSCNREIKFGALMERLLPEREKGRKSWLATGHYAHVAWSEQGRPMLMRAKDRTKDQ 243

Query: 147 GMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
              LS + +  L   +     P     +  +R    + ++ 
Sbjct: 244 TYYLSSVAEDRLAHAHF----PLAHLLKSQVRELAKKHSLP 280


>gi|238897963|ref|YP_002923643.1| queuosine biosynthesis protein, ExsB domain protein [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465721|gb|ACQ67495.1| queuosine biosynthesis protein, ExsB domain protein [Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 236

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 14 RSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY 72
          ++      +LV  SGG DS   L+ ALH           +   I+ D+  R  +  E+  
Sbjct: 3  KNNPIKRAVLV-FSGGQDSTTCLIQALHQYD--------EVHCITFDYAQRHRS--EIAI 51

Query: 73 VSDVCSRLR 81
             +  +L+
Sbjct: 52 AQALAKKLQ 60


>gi|220904845|ref|YP_002480157.1| phosphoadenosine phosphosulfate reductase [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869144|gb|ACL49479.1| phosphoadenosine phosphosulfate reductase [Desulfovibrio
          desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 396

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
           + V+ SGG DS  L+     V   R   ++    + +D  L    +    +V+ +
Sbjct: 27 RVYVSFSGGKDSGCLVHLALEVA--RRKKRLPLDVLHID--LEAWYRHTADFVARI 78


>gi|325661920|ref|ZP_08150540.1| argininosuccinate synthase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|331085787|ref|ZP_08334870.1| argininosuccinate synthase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|325471772|gb|EGC74990.1| argininosuccinate synthase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|330406710|gb|EGG86215.1| argininosuccinate synthase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 405

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 37/201 (18%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK--DE------- 69
              +++A SGG D+         +   +     +     +D    E     +E       
Sbjct: 2   KEKVILAYSGGLDTTA------IIPWLKENFDYEVICCCIDCGQGEELDGLEERAKLSGA 55

Query: 70  -----VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                   V + C    +     +           A AR      + E A+  +A+ I  
Sbjct: 56  SKLYIENIVDEFCDDYIVPCVQANAIYENKYLLGTAMARPGIAKKLVEIARKEHASAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+     R +         L  +    + D        +    RE+  ++  
Sbjct: 116 GATGKGNDQI-----RFELGIKALAPDLKIIAPWRMTD-------LWTLNSREEEIAYCH 163

Query: 183 QRNISWCEDPSNTDDRFERVR 203
           Q  I    D S     + R R
Sbjct: 164 QHGIDLPFDAS---QSYSRDR 181


>gi|312173828|emb|CBX82082.1| putative asparagine synthetase B2 [Erwinia amylovora ATCC BAA-2158]
          Length = 510

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 6   IESVRFFV-RSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ ++  V + L     I  A   SGG DS  +L  +      R+  +    A +  +  
Sbjct: 192 IDKLKRAVSKMLPRKGEIA-ACMLSGGVDSSSILTLM------RNLHEGPVVAYTF-YNK 243

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS 88
             ++ D+      +C  L +   VV+
Sbjct: 244 DASSSDDYEAAKIICEHLDVPLRVVT 269


>gi|292489653|ref|YP_003532543.1| putative asparagine synthetase B2 [Erwinia amylovora CFBP1430]
 gi|292898133|ref|YP_003537502.1| asparagine synthetase [Erwinia amylovora ATCC 49946]
 gi|291197981|emb|CBJ45083.1| putative asparagine synthetase [Erwinia amylovora ATCC 49946]
 gi|291555090|emb|CBA23208.1| putative asparagine synthetase B2 [Erwinia amylovora CFBP1430]
          Length = 529

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 6   IESVRFFV-RSLVYPAHILVAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           I+ ++  V + L     I  A   SGG DS  +L  +      R+  +    A +  +  
Sbjct: 211 IDKLKRAVSKMLPRKGEIA-ACMLSGGVDSSSILTLM------RNLHEGPVVAYTF-YNK 262

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVS 88
             ++ D+      +C  L +   VV+
Sbjct: 263 DASSSDDYEAAKIICEHLDVPLRVVT 288


>gi|260170432|ref|ZP_05756844.1| hypothetical protein BacD2_01058 [Bacteroides sp. D2]
 gi|315918788|ref|ZP_07915028.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692663|gb|EFS29498.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +I V+ SGG DS  LL      +   +  KI+     +D+ ++
Sbjct: 28 DNIYVSFSGGKDSGVLLNMCIDYIRKNNL-KIRLGVFHMDYEIQ 70


>gi|254779876|ref|YP_003057982.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori B38]
 gi|254001788|emb|CAX30019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Helicobacter pylori B38]
          Length = 342

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 34/128 (26%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VS 74
            I V +SGG DS     +L     +     +K  A             E ++        
Sbjct: 2   KIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHA------------SEKKHDLYIKNAQ 49

Query: 75  DVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTIN 118
             C  L I   V+ ++                        A      ++ L  +HA  + 
Sbjct: 50  KACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALQLG 109

Query: 119 ATLIMTAH 126
              I T H
Sbjct: 110 CEKIATGH 117


>gi|255691771|ref|ZP_05415446.1| Co-activator of prophage protein expression IbrA [Bacteroides
          finegoldii DSM 17565]
 gi|260622487|gb|EEX45358.1| Co-activator of prophage protein expression IbrA [Bacteroides
          finegoldii DSM 17565]
          Length = 433

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +I V+ SGG DS  LL      +   +  KI+     +D+ ++
Sbjct: 27 DNIYVSFSGGKDSGVLLNMCIDYIRKNNL-KIRLGVFHMDYEIQ 69


>gi|153806221|ref|ZP_01958889.1| hypothetical protein BACCAC_00476 [Bacteroides caccae ATCC 43185]
 gi|149130898|gb|EDM22104.1| hypothetical protein BACCAC_00476 [Bacteroides caccae ATCC 43185]
          Length = 434

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR 63
           +I V+ SGG DS  LL      +   +  KI+     +D+ ++
Sbjct: 28 DNIYVSFSGGKDSGVLLNMCIDYIRKNNL-KIRLGVFHMDYEIQ 70


>gi|257076354|ref|ZP_05570715.1| thiamine biosynthesis protein ThiI [Ferroplasma acidarmanus fer1]
          Length = 473

 Score = 39.9 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 17/87 (19%)

Query: 107 YALISEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWIS 166
           Y+   E  +  +   I+T        E++         +    +     ++ YD+N  + 
Sbjct: 260 YSYAEELCQENDYDAIVTG-------ESI--------GQVSSQIPKNLKSLSYDINTPVF 304

Query: 167 RPFLRCRREDIRSFLLQRNISWCEDPS 193
           RP +   +E+  ++  ++ +    D S
Sbjct: 305 RPLIGFDKEETINYSKRKGL--YMDES 329


>gi|302035751|ref|YP_003796073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrospira defluvii]
 gi|300603815|emb|CBK40147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Candidatus Nitrospira defluvii]
          Length = 360

 Score = 39.9 bits (92), Expect = 0.82,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 34/129 (26%), Gaps = 27/129 (20%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI-SVDHCLRETAKDEVRY-------V 73
           +L+ +SGG DS      L  V        I        D  +   +K             
Sbjct: 6   VLLGMSGGVDSSVAASLL--VQQGYDVHGITLQVWEHEDDQI-AVSKRWEERGCCKIGIA 62

Query: 74  SDVCSRLRIAHSVVSWKNSKPQT---------------GLMAAAREA-RYALISEHAKTI 117
             V  RLRI + VV  +    Q                       E  +   +   A+  
Sbjct: 63  KYVAQRLRIPYEVVDRREVFQQGVIDDFVAGYASGTTPNPCVRCNERVKLRSLYALAQER 122

Query: 118 NATLIMTAH 126
               + T H
Sbjct: 123 GMDHVATGH 131


>gi|330995326|ref|ZP_08319236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329575821|gb|EGG57345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 352

 Score = 39.9 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 30/188 (15%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
            I V +SGG DS   +  +  +        IK         L  TA++++   +    R 
Sbjct: 2   RIAVLISGGVDSAVAVHRICEMGYKPDLFYIKIG--MEGEGLSCTAEEDIELSTATARRY 59

Query: 81  RIAHSVVSWKNSKPQTGLMAAAREARYAL-------------ISEHAKTIN--ATLIMTA 125
            +   VV  +    +  +  A   AR  L                  + +      I T 
Sbjct: 60  GLHLEVVDLQKQYWELVVGYAMERARRGLTPNPDVMCNKLIKFGCFEQEVGHRYDKIATG 119

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNL------WISRPFLRCRREDIRS 179
           H       TV  R +      G     + D   +   +       +  P     +E++R 
Sbjct: 120 HYA-----TV--RERDGKIWLGTARDPVKDQTDFLAQIDSLQVAKLMFPVGDLMKEEVRR 172

Query: 180 FLLQRNIS 187
               + + 
Sbjct: 173 IAETQRLP 180


>gi|325267556|ref|ZP_08134208.1| transcription regulator ExsB [Kingella denitrificans ATCC 33394]
 gi|324980906|gb|EGC16566.1| transcription regulator ExsB [Kingella denitrificans ATCC 33394]
          Length = 217

 Score = 39.9 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L  A+    ++         AI+  +  R     E+   + +   L
Sbjct: 5  LVV-FSGGQDSTTCLFQAMQQYGAE------NVQAITFAYGQRHG--IELERAASIAQEL 55

Query: 81 RIAHSVVS 88
           I  +V+ 
Sbjct: 56 GIRQTVLD 63


>gi|323957534|gb|EGB53252.1| phosphoadenosine phosphosulfate reductase [Escherichia coli H263]
          Length = 271

 Score = 39.9 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 22 ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          + ++ SGG DS  L   L  V   +     +FS + +D
Sbjct: 34 VCLSFSGGKDSTVLFHLLADVARRKKR---RFSVLFID 68


>gi|283465234|gb|ADB23100.1| GMP synthase [Rhodopirellula sp. 8C]
          Length = 277

 Score = 39.9 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS  +   L+  +        + S I VD+  LR+    E +
Sbjct: 147 IRKQVGDKRVICGLSGGVDSSVVAALLYKAI------GPQLSCILVDNGLLRKN---EQQ 197

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISE----HAKTINATL 121
            V  +  +  +    VV  ++                R   +A I       A+  +A  
Sbjct: 198 IVLEEFSNHFKTDLHVVEAEDRFLADLAGIDEPQEKRRRIGHAFIECFKDEAARIEDAHF 257

Query: 122 IMTAHTFDDQLET 134
           +     + D +E+
Sbjct: 258 LAQGTLYPDVIES 270


>gi|238916535|ref|YP_002930052.1| argininosuccinate synthase [Eubacterium eligens ATCC 27750]
 gi|259585357|sp|C4Z4C1|ASSY_EUBE2 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|238871895|gb|ACR71605.1| argininosuccinate synthase [Eubacterium eligens ATCC 27750]
          Length = 408

 Score = 39.9 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 56/204 (27%), Gaps = 44/204 (21%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKD--EVRYVS-- 74
              +++A SGG D+         +   +         +  D C +E   D  E R +S  
Sbjct: 2   KEKVILAYSGGLDTTA------IIPWLKETYNYDVVCVCAD-CGQEEELDGLEQRALSCG 54

Query: 75  -----------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
                      + C    +                 + AR      + E A+   A  I 
Sbjct: 55  AAKLYIEDITDEFCDNYIVPCVQAHAVYENKYLLGTSMARPLIAKRLVEIARKEGAVAIC 114

Query: 124 TAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFL 181
              T   +DQ+        R           +     +  + W  +      RED   + 
Sbjct: 115 HGATGKGNDQI--------RFELTIKALAPDIKIIAPWRDSNWKLQ-----SREDEIEYC 161

Query: 182 LQRNI--SWCEDPSNTDDRFERVR 203
            Q  I   +  D S     + R R
Sbjct: 162 RQHGIHLPFSTDCS-----YSRDR 180


>gi|220956672|gb|ACL90879.1| mew-PA [synthetic construct]
          Length = 1053

 Score = 39.9 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 65/206 (31%), Gaps = 21/206 (10%)

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +       E    LS      ++              +  I S     + S  +D S  D
Sbjct: 800 LNLASGSRENPAYLSAPAQMRMFPSQSRH-----SFNKSLIHSQRSYYSSSHRDDHS-DD 853

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKF---QDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
            +  R RVRR            ++++     +     N     ++         + + I 
Sbjct: 854 TQSNRNRVRR-----SFLERVTRLERLMYDPESSNAANGKKQDIVELDCNKGATNCVRIE 908

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            DILN+ +     ++  +         +  Y  +ERV +F  +  +   S G  V+D   
Sbjct: 909 CDILNMPALSEAQVVVKARLW--NSTLVSEYPRVERVRIFSTATAQIPESYGVEVMDHNN 966

Query: 314 NFLWITRAVRNLPTLILYPEETTV-W 338
               I    R  P L     +T++ W
Sbjct: 967 ----IEVETRAYPELRNQQRDTSIPW 988


>gi|24641709|ref|NP_511145.2| multiple edematous wings, isoform B [Drosophila melanogaster]
 gi|13124799|sp|Q24247|ITA1_DROME RecName: Full=Integrin alpha-PS1; AltName: Full=Position-specific
            antigen subunit alpha-1; AltName: Full=Protein multiple
            edematous wings; Contains: RecName: Full=Integrin
            alpha-PS1 heavy chain; Contains: RecName: Full=Integrin
            alpha-PS1 light chain; Flags: Precursor
 gi|22833140|gb|AAF48242.2| multiple edematous wings, isoform B [Drosophila melanogaster]
          Length = 1146

 Score = 39.9 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 65/206 (31%), Gaps = 21/206 (10%)

Query: 137  MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +       E    LS      ++              +  I S     + S  +D S  D
Sbjct: 897  LNLASGSRENPAYLSAPAQMRMFPSQSRH-----SFNKSLIHSQRSYYSSSHRDDHS-DD 950

Query: 197  DRFERVRVRRFVRDIDLHALYLKMKKF---QDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
             +  R RVRR            ++++     +     N     ++         + + I 
Sbjct: 951  TQSNRNRVRR-----SFLERVTRLERLMYDPESSNAANGKKQDIVELDCNKGATNCVRIE 1005

Query: 254  QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
             DILN+ +     ++  +         +  Y  +ERV +F  +  +   S G  V+D   
Sbjct: 1006 CDILNMPALSEAQVVVKARLW--NSTLVSEYPRVERVRIFSTATAQIPESYGVEVMDHNN 1063

Query: 314  NFLWITRAVRNLPTLILYPEETTV-W 338
                I    R  P L     +T++ W
Sbjct: 1064 ----IEVETRAYPELRNQQRDTSIPW 1085


>gi|24641711|ref|NP_727679.1| multiple edematous wings, isoform A [Drosophila melanogaster]
 gi|18447226|gb|AAL68203.1| GH14509p [Drosophila melanogaster]
 gi|22833141|gb|AAN09652.1| multiple edematous wings, isoform A [Drosophila melanogaster]
 gi|220947096|gb|ACL86091.1| mew-PA [synthetic construct]
          Length = 1049

 Score = 39.9 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 65/206 (31%), Gaps = 21/206 (10%)

Query: 137 MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
           +       E    LS      ++              +  I S     + S  +D S  D
Sbjct: 800 LNLASGSRENPAYLSAPAQMRMFPSQSRH-----SFNKSLIHSQRSYYSSSHRDDHS-DD 853

Query: 197 DRFERVRVRRFVRDIDLHALYLKMKKF---QDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
            +  R RVRR            ++++     +     N     ++         + + I 
Sbjct: 854 TQSNRNRVRR-----SFLERVTRLERLMYDPESSNAANGKKQDIVELDCNKGATNCVRIE 908

Query: 254 QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
            DILN+ +     ++  +         +  Y  +ERV +F  +  +   S G  V+D   
Sbjct: 909 CDILNMPALSEAQVVVKARLW--NSTLVSEYPRVERVRIFSTATAQIPESYGVEVMDHNN 966

Query: 314 NFLWITRAVRNLPTLILYPEETTV-W 338
               I    R  P L     +T++ W
Sbjct: 967 ----IEVETRAYPELRNQQRDTSIPW 988


>gi|440144|emb|CAA52155.1| integrin [Drosophila melanogaster]
          Length = 1146

 Score = 39.9 bits (92), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 65/206 (31%), Gaps = 21/206 (10%)

Query: 137  MRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNISWCEDPSNTD 196
            +       E    LS      ++              +  I S     + S  +D S  D
Sbjct: 897  LNLASGSRENPAYLSAPAQMRMFPSQSRH-----SFNKSLIHSQRSYYSSSHRDDHS-DD 950

Query: 197  DRFERVRVRRFVRDIDLHALYLKMKKF---QDLRVKVNNAVAMLIPKYLTVHMRSIIAIS 253
             +  R RVRR            ++++     +     N     ++         + + I 
Sbjct: 951  TQSNRNRVRR-----SFLERVTRLERLMYDPESSNAANGKKQDIVELDCNKGATNCVRIE 1005

Query: 254  QDILNIDSTLLFYLLRVSAAICGGQISLPGYRSMERVMLFLKSGKRGCVSIGRVVIDRRA 313
             DILN+ +     ++  +         +  Y  +ERV +F  +  +   S G  V+D   
Sbjct: 1006 CDILNMPALSEAQVVVKARLW--NSTLVSEYPRVERVRIFSTATAQIPESYGVEVMDHNN 1063

Query: 314  NFLWITRAVRNLPTLILYPEETTV-W 338
                I    R  P L     +T++ W
Sbjct: 1064 ----IEVETRAYPELRNQQRDTSIPW 1085


>gi|330936961|gb|EGH41067.1| GMP synthase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 288

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           VR+ V   ++L+ +SGG DS  +   LH  + D      + + + VD+ L
Sbjct: 221 VRAQVGTDNVLLGLSGGVDSSVVAALLHKAIGD------QLTCVFVDNGL 264


>gi|326526129|dbj|BAJ93241.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 461

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           E ++     +    H++ A+SGG DS      +H+ + DR         + VD+ L
Sbjct: 223 EEIKTIQSMVGPDEHVICALSGGVDSTVAATLVHNAIGDR------LHCVFVDNGL 272


>gi|313622926|gb|EFR93229.1| argininosuccinate synthase [Listeria innocua FSL J1-023]
          Length = 404

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 47/193 (24%)

Query: 19  PAHILVAVSGGSD-SMG----------LLIALHSVLSDRSFGKIKFSAISVDHCLRETA- 66
              I++A SGG D S+           ++     V   ++   IK  AI+V       + 
Sbjct: 3   KEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLDFIKEKAINV-----GASA 57

Query: 67  ----KDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
                 +  +  +      IA    ++   K    + A +R      + E A+   A+ I
Sbjct: 58  SYTIDAKEEFAENFAL---IALQAHAYYEGKYPL-ISALSRPLIAKKLVEVARQEGASAI 113

Query: 123 MTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRREDIR 178
               T   +DQ+                             +L +  P    +  RE+  
Sbjct: 114 AHGCTGKGNDQV------------------RFEVAIHALAPDLKVVSPVRDWKWSREEEI 155

Query: 179 SFLLQRNISWCED 191
           ++  + NI    D
Sbjct: 156 NYAKEHNIPVPID 168


>gi|300918173|ref|ZP_07134780.1| ExsB protein [Escherichia coli MS 115-1]
 gi|300414624|gb|EFJ97934.1| ExsB protein [Escherichia coli MS 115-1]
          Length = 231

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|289451214|gb|ADC94128.1| PP-loop superfamily protein [Leptospira interrogans serovar
           Hebdomadis]
          Length = 380

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE ++   +   Y    ++ +SGG DS  L          R           VD      
Sbjct: 58  IEKIKLAGKDKDYDC--ILGISGGVDSSYLAYLAKKKFGLRPL------LFHVDAGW--N 107

Query: 66  AKDEVRYVSDVCSRLRIAH--SVVSWKNSK 93
           +++ V  +  +   L++     VV+W+  K
Sbjct: 108 SQEAVNNIEKIVDGLKLDLITEVVNWEEMK 137


>gi|223041195|ref|ZP_03611447.1| tRNA methyl transferase [Campylobacter rectus RM3267]
 gi|222877554|gb|EEF12683.1| tRNA methyl transferase [Campylobacter rectus RM3267]
          Length = 328

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          LV  SGG DSM  +  L +         I  +AI +D       K     +    +    
Sbjct: 4  LVLFSGGLDSMIAIRLLTA-------QGIDVTAIHIDIGFSGDEKK-AEILRRRANEAGA 55

Query: 83 AHSVVSWKNS 92
             +++ +N 
Sbjct: 56 ELKIINIRNE 65


>gi|157736921|ref|YP_001489604.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
 gi|157698775|gb|ABV66935.1| putative LPS biosynthesis protein WbpG [Arcobacter butzleri RM4018]
          Length = 390

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 22/137 (16%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
            F+  IE ++   ++  Y    ++ VSGG+DS  +L              ++  A+  D+
Sbjct: 55  QFIKIIEQIKKDGKNKKYDC--IIGVSGGTDSSYMLYLAKQW-------GLRPLAVHYDN 105

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQ-----------TGLMAAAREARYAL 109
                +      +  V + L I        N +               + A+   A   +
Sbjct: 106 TW--NSAIATENIRKVLTALDIDLYTHVTDNKEADDIFRSFFYADVAEIEASTDLALAEV 163

Query: 110 ISEHAKTINATLIMTAH 126
           +   A       ++  H
Sbjct: 164 MYRAAWKYKVKYVLEGH 180


>gi|88810769|ref|ZP_01126026.1| putative LPS biosynthesis protein WbpG [Nitrococcus mobilis Nb-231]
 gi|88792399|gb|EAR23509.1| putative LPS biosynthesis protein WbpG [Nitrococcus mobilis Nb-231]
          Length = 360

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 9/71 (12%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
           ++ VSGG DS  +      +        ++  A+  D+     ++  V  +     RL I
Sbjct: 59  VIGVSGGVDSTYVAYLTKQL-------GLRPLAVHFDNGW--DSEFAVANIEKTLDRLSI 109

Query: 83  AHSVVSWKNSK 93
                     +
Sbjct: 110 DLYTYVVDWEE 120


>gi|308050448|ref|YP_003914014.1| GMP synthase (glutamine-hydrolyzing) [Ferrimonas balearica DSM
           9799]
 gi|307632638|gb|ADN76940.1| GMP synthase (glutamine-hydrolyzing) [Ferrimonas balearica DSM
           9799]
          Length = 524

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 66/195 (33%), Gaps = 25/195 (12%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     ++  V    +++ +SGG DS  + + LH  +        + + + VD+  LR 
Sbjct: 213 IEDAIARIKEKVGGDKVILGLSGGVDSSVVAMLLHRAI------GSQLTCVFVDNGLLRL 266

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNSKP-------QTGLMAAAREARYALI----SEH 113
              D+V           +  ++V     +        +    A  +   +  I     E 
Sbjct: 267 NEGDQVM--EMFGDHFGL--NIVRVDAEERFLNALEGENDPEAKRKIIGHTFIEVFDEEA 322

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           +K  +   +     + D +E+             +        +  D+ L +  P     
Sbjct: 323 SKIQDVKWLAQGTIYPDVIES---AGAATGKAHVIKSHHNVGGLPEDMELGLVEPLTELF 379

Query: 174 REDIRSFLLQRNISW 188
           ++++R   L+  + +
Sbjct: 380 KDEVRKIGLELGLPY 394


>gi|126442586|ref|YP_001062697.1| sulfate adenylyltransferase subunit 2 [Burkholderia pseudomallei
           668]
 gi|126222077|gb|ABN85582.1| sulfate adenylyltransferase, small subunit [Burkholderia
           pseudomallei 668]
          Length = 318

 Score = 39.9 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L        L       + F  + +D  H   E      R   ++ + L 
Sbjct: 46  FSGGKDSVVVLHLALKAFGLGANRKTSLPFPLVHIDTGHNYDEVIDFRDRRAQEIGAELI 105

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S K           +R A  A+ + E  +    T ++     D
Sbjct: 106 VGHVEDSIKRGTVVLRRETDSRNAAQAVTLLETIEQHGYTAMIGGARRD 154


>gi|262041296|ref|ZP_06014507.1| immunoglobulin-binding regulator A [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
 gi|259041412|gb|EEW42472.1| immunoglobulin-binding regulator A [Klebsiella pneumoniae subsp.
          rhinoscleromatis ATCC 13884]
          Length = 409

 Score = 39.9 bits (92), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 9/54 (16%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-------ISVDHC--LRE 64
          + I V+ SGG DS  +L         +                 ++ HC  LR 
Sbjct: 30 SRICVSFSGGKDSTVMLHLTAQAARLQGKKICVLFIDWEAQFSCTIAHCEKLRA 83


>gi|169835698|ref|ZP_02868886.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [candidate division TM7 single-cell isolate TM7a]
          Length = 516

 Score = 39.9 bits (92), Expect = 0.85,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDR 46
           S I     F++  V   H+L+A+SGG DS    + +++ +  +
Sbjct: 201 SFIAEKTKFIKETVGDEHVLLALSGGVDSSVAAVLINNAIGHQ 243


>gi|331651382|ref|ZP_08352407.1| ExsB protein [Escherichia coli M718]
 gi|331051123|gb|EGI23175.1| ExsB protein [Escherichia coli M718]
          Length = 231

 Score = 39.9 bits (92), Expect = 0.86,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|221217912|ref|ZP_03589379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 72a]
 gi|221192218|gb|EEE18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 72a]
          Length = 355

 Score = 39.9 bits (92), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   ++   S+     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWV--------EDELSYIGNCPWQEDL 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------------KPQTGLMAAAREARYALISEH 113
            YV  +C++  + + +++++                    P   +    R    A   + 
Sbjct: 54  NYVEAICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKI 113

Query: 114 AKTINATLIMTAHTFDDQL-ET-VYMRSQRDYAE-KGMGLSGMCDTILYDLNLWISRPFL 170
                  L++T H    Q  E+   ++  +D  + +   LS +    +      +  P  
Sbjct: 114 --NSQYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSK----LYFPLG 167

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R      N+ 
Sbjct: 168 TLLKSEVRQIAKNINLP 184


>gi|224532386|ref|ZP_03673016.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
 gi|225548926|ref|ZP_03769903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 94a]
 gi|225550036|ref|ZP_03770997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 118a]
 gi|224512693|gb|EEF83064.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23]
 gi|225369495|gb|EEG98947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 118a]
 gi|225370529|gb|EEG99965.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 94a]
          Length = 355

 Score = 39.9 bits (92), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   ++   S+     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWV--------EDELSYIGNCPWQEDL 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------------KPQTGLMAAAREARYALISEH 113
            YV  +C++  + + +++++                    P   +    R    A   + 
Sbjct: 54  NYVEAICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKI 113

Query: 114 AKTINATLIMTAHTFDDQL-ET-VYMRSQRDYAE-KGMGLSGMCDTILYDLNLWISRPFL 170
                  L++T H    Q  E+   ++  +D  + +   LS +    +      +  P  
Sbjct: 114 --NSQYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSK----LYFPLG 167

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R      N+ 
Sbjct: 168 TLLKSEVRQIAKNINLP 184


>gi|216264880|ref|ZP_03436872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 156a]
 gi|215981353|gb|EEC22160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Borrelia burgdorferi 156a]
          Length = 355

 Score = 39.9 bits (92), Expect = 0.86,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 65/197 (32%), Gaps = 44/197 (22%)

Query: 21  HILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA---------KDEV 70
            I V +SGG DS + L   ++   S+     +K           E           ++++
Sbjct: 2   KIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWV--------EDELSYIGNCPWQEDL 53

Query: 71  RYVSDVCSRLRIAHSVVSWKNS-----------------KPQTGLMAAAREARYALISEH 113
            YV  +C++  + + +++++                    P   +    R    A   + 
Sbjct: 54  NYVEAICNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKI 113

Query: 114 AKTINATLIMTAHTFDDQL-ET-VYMRSQRDYAE-KGMGLSGMCDTILYDLNLWISRPFL 170
                  L++T H    Q  E+   ++  +D  + +   LS +    +      +  P  
Sbjct: 114 --NSQYDLVVTGHYAKIQRKESKFLLKQAKDKIKDQSYFLSHLSQKQMSK----LYFPLG 167

Query: 171 RCRREDIRSFLLQRNIS 187
              + ++R      N+ 
Sbjct: 168 TLLKSEVRQIAKNINLP 184


>gi|329896217|ref|ZP_08271395.1| Argininosuccinate synthase [gamma proteobacterium IMCC3088]
 gi|328921888|gb|EGG29255.1| Argininosuccinate synthase [gamma proteobacterium IMCC3088]
          Length = 406

 Score = 39.9 bits (92), Expect = 0.86,   Method: Composition-based stats.
 Identities = 40/191 (20%), Positives = 63/191 (32%), Gaps = 41/191 (21%)

Query: 21  HILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET-----AKDEVRYVS 74
            +++A SGG D S+     +  +    +   + F+A   D    E      AK E   V 
Sbjct: 6   KVVLAYSGGLDTSV----IVRWLQDTYNCEVVTFTA---DIGQGEEVEPARAKAEALGVK 58

Query: 75  D-VCSRLRIAHS-VVSWKNSKPQTGLMAA-------AREARYALISEHAKTINATLIMTA 125
           +     LR        +   +  T            AR      + E A   NA  I   
Sbjct: 59  EIYIEDLREEFVRDFVFPMFRANTVYEGEYLLGTSIARPLIAKRLVEIANETNADAISHG 118

Query: 126 HT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
            T   +DQ+     R +        G+  +     +DLN           RE + ++  +
Sbjct: 119 ATGKGNDQV-----RFELGAYALKPGIQVIAPWREWDLN----------SREALMAYCEE 163

Query: 184 RNISWCEDPSN 194
           RNI    D SN
Sbjct: 164 RNIPV--DFSN 172


>gi|238923969|ref|YP_002937485.1| argininosuccinate synthase [Eubacterium rectale ATCC 33656]
 gi|259585358|sp|C4Z9C9|ASSY_EUBR3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|238875644|gb|ACR75351.1| argininosuccinate synthase [Eubacterium rectale ATCC 33656]
 gi|291524715|emb|CBK90302.1| argininosuccinate synthase [Eubacterium rectale DSM 17629]
 gi|291528963|emb|CBK94549.1| argininosuccinate synthase [Eubacterium rectale M104/1]
          Length = 408

 Score = 39.9 bits (92), Expect = 0.86,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 42/203 (20%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----------AKD 68
              +++A SGG D+         +   +           ++    E           +  
Sbjct: 2   KDKVVLAYSGGLDTTA------IIPWLKETYDYDVICCCINCGQGEELDGLDERAKLSGA 55

Query: 69  EVRYVSDVCSRLR---IAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINATLIMT 124
              Y+ D+C       I   V +    + +  L  A AR      + E A+   A  I  
Sbjct: 56  SKLYIEDICDEFSEDYIVPCVQAGAVYEHKYLLGTAMARPGIAKKLVEIARKEGAVAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+        R           +     +  + W     +  R  +I  +  
Sbjct: 116 GATGKGNDQI--------RFELGIKALAPDIKVIAPWRQDNW----KMDSREAEIE-YCK 162

Query: 183 QRNI--SWCEDPSNTDDRFERVR 203
              I   +  D S     + R R
Sbjct: 163 AHGIDLPFGTDSS-----YSRDR 180


>gi|152969218|ref|YP_001334327.1| hypothetical protein KPN_00647 [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|330006081|ref|ZP_08305488.1| immunoglobulin-binding regulator A [Klebsiella sp. MS 92-3]
 gi|150954067|gb|ABR76097.1| hypothetical protein KPN_00647 [Klebsiella pneumoniae subsp.
          pneumoniae MGH 78578]
 gi|328535981|gb|EGF62395.1| immunoglobulin-binding regulator A [Klebsiella sp. MS 92-3]
          Length = 409

 Score = 39.9 bits (92), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 9/54 (16%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-------ISVDHC--LRE 64
          + I V+ SGG DS  +L         +                 ++ HC  LR 
Sbjct: 30 SRICVSFSGGKDSTVMLHLTAQAARLQGKKICVLFIDWEAQFSCTIAHCEKLRA 83


>gi|114567299|ref|YP_754453.1| GMP synthase [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122317748|sp|Q0AW22|GUAA_SYNWW RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|114338234|gb|ABI69082.1| GMP synthase (glutamine-hydrolyzing) [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 510

 Score = 39.9 bits (92), Expect = 0.86,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 63/185 (34%), Gaps = 24/185 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           +++ V    +L A+SGG DS      +H  + +      +   + VD+  LR+    +V 
Sbjct: 209 IKNKVGKKRVLCALSGGVDSSVAATLVHQAVGE------QLVCVFVDNGLLRKGEASQVI 262

Query: 71  -RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR-------YALISEHAKTINATLI 122
             +  ++  ++ +       +      G+    R+ +            E AK      +
Sbjct: 263 DTFAKEM--KMNLVFVDARERFLAKLAGITEPERKRKIIGEEFIRIFEEEKAKLGEIDYL 320

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           +    + D +E            + +        +  D++  +  P     ++++R    
Sbjct: 321 VQGTIYPDIVE------SGTSTAQTIKSHHNVGGLPEDMDFQLIEPLRLLFKDEVRLVGE 374

Query: 183 QRNIS 187
           +  I 
Sbjct: 375 KLGIP 379


>gi|297621469|ref|YP_003709606.1| Queuosine biosynthesis protein QueC [Waddlia chondrophila WSU
          86-1044]
 gi|297376770|gb|ADI38600.1| Queuosine biosynthesis protein QueC [Waddlia chondrophila WSU
          86-1044]
          Length = 212

 Score = 39.9 bits (92), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 9/64 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
          +SGG DS  +L    S+  +        +A+S D+  R   K E+ + + +    ++   
Sbjct: 7  LSGGIDSTVVLAMAQSLGRE-------CTALSFDYGQRH--KVELEHAAHIAHYYKVPQI 57

Query: 86 VVSW 89
          +++ 
Sbjct: 58 IINI 61


>gi|283465216|gb|ADB23092.1| GMP synthase [Rhodopirellula sp. 1S]
          Length = 306

 Score = 39.9 bits (92), Expect = 0.87,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 31/172 (18%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS  +   L+  +        + S I VD+  LR+    E +
Sbjct: 151 IRKQVGDKRVICGLSGGVDSSVVAALLYKAI------GPQLSCILVDNGLLRKN---EQQ 201

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISE----HAKTINATL 121
            V  +  +  +    VV  ++                R   +A I       A+  +A  
Sbjct: 202 IVLEEFSNHFKTDLHVVEAEDRFLADLAGIDEPQEKRRRIGHAFIECFKDEAARIEDAHF 261

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMG----LSGMCDTILYDLNLWISRPF 169
           +     + D +E+          + G      L      +  +L   +  P 
Sbjct: 262 LAQGTLYPDVIES-------GADKDGPAATIKLHHNVGGLPEELGFELIEPL 306


>gi|300774165|ref|ZP_07084033.1| ExsB superfamily protein [Sphingobacterium spiritivorum ATCC
          33861]
 gi|300758976|gb|EFK55804.1| ExsB superfamily protein [Sphingobacterium spiritivorum ATCC
          33861]
          Length = 198

 Score = 39.9 bits (92), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 14/74 (18%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV-CSRLRIAH 84
          +SGG DS+ L   L           I   A ++++     +++   YVS   C+ LRI H
Sbjct: 10 LSGGVDSICLAYGLK--------PDI---AYTINYGQIPASRE--IYVSRYICNLLRIQH 56

Query: 85 SVVSWKNSKPQTGL 98
           V+        +G+
Sbjct: 57 KVIEVNCKSLGSGI 70


>gi|108798144|ref|YP_638341.1| GMP synthase [Mycobacterium sp. MCS]
 gi|119867240|ref|YP_937192.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [Mycobacterium sp. KMS]
 gi|126433803|ref|YP_001069494.1| GMP synthase [Mycobacterium sp. JLS]
 gi|108768563|gb|ABG07285.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. MCS]
 gi|119693329|gb|ABL90402.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. KMS]
 gi|126233603|gb|ABN97003.1| GMP synthase (glutamine-hydrolyzing) [Mycobacterium sp. JLS]
          Length = 519

 Score = 39.9 bits (92), Expect = 0.87,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 65/192 (33%), Gaps = 26/192 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           VR  +     +  +SGG DS     A+ + L  R+ G  + + + VDH  LR   + +V+
Sbjct: 211 VREQIGDGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLLRSGERAQVQ 264

Query: 72  --YVSDVCSRL-RIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTIN-----A 119
             +V+   + L  +  +    +     T          RE   A        +       
Sbjct: 265 RDFVAATGANLVTVDVADRFLQELSGVTNPEGKRKIIGREFISAFDDAVVDIVGDSGAPV 324

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             ++    + D +E+             +        +  DL   +  P     ++++R+
Sbjct: 325 EFLVQGTLYPDVVES-----GGGSGTANIKSHHNVGGLPADLKFKLVEPLRLLFKDEVRA 379

Query: 180 FLLQRNISWCED 191
              +  +   ED
Sbjct: 380 VGRELGLP--ED 389


>gi|315186649|gb|EFU20408.1| asparagine synthase [Spirochaeta thermophila DSM 6578]
          Length = 292

 Score = 39.9 bits (92), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 1  MFLSPIESVR-FFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV 58
          M LS IE      V  L     I V  SGG DS  L +    VL   +          V
Sbjct: 18 MDLSLIEKEEDRLVEVLKGYGRIAVGFSGGVDSTFLAVVAREVLGKDAVRAYTLLPPHV 76


>gi|300728582|ref|ZP_07061940.1| sulfate adenylyltransferase, small subunit [Prevotella bryantii
           B14]
 gi|299774151|gb|EFI70785.1| sulfate adenylyltransferase, small subunit [Prevotella bryantii
           B14]
          Length = 301

 Score = 39.9 bits (92), Expect = 0.88,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRIA 83
            SGG DS+ +    +         KI F  + +D  H  +ET       V  + + L I 
Sbjct: 34  FSGGKDSIVVTYLAYKAFYP---AKIPFQLLHIDTGHNFQETLDYRDALVEKLGADLIIG 90

Query: 84  HSVVSWKNSKPQTGLMAAAREAR 106
               S    + +      A   R
Sbjct: 91  SVQESIDQGRVKEETGYYASRNR 113


>gi|298483021|ref|ZP_07001202.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
           D22]
 gi|298270765|gb|EFI12345.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
           D22]
          Length = 426

 Score = 39.9 bits (92), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKDEVRYVSDVCSR 79
           + V+ SGG DS  LL      +   + G+ K     +D+    R++      YV  + S 
Sbjct: 25  VYVSFSGGKDSGILLHLCMDYIRMHAPGR-KLGVFHMDYEVQYRQS----TEYVERMFSN 79

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               L + H  V +K     +      R  +    +   + +  T +
Sbjct: 80  NRDILEVFHCCVPFKVPTCTSMYQQYWRPWQEGYQNIWVRQMPGTAL 126


>gi|298384205|ref|ZP_06993765.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
           1_1_14]
 gi|298262484|gb|EFI05348.1| Co-activator of prophage protein expression IbrA [Bacteroides sp.
           1_1_14]
          Length = 426

 Score = 39.9 bits (92), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKDEVRYVSDVCSR 79
           + V+ SGG DS  LL      +   + G+ K     +D+    R++      YV  + S 
Sbjct: 25  VYVSFSGGKDSGILLHLCMDYIRMHAPGR-KLGVFHMDYEVQYRQS----TEYVERMFSN 79

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               L + H  V +K     +      R  +    +   + +  T +
Sbjct: 80  NRDILEVFHCCVPFKVPTCTSMYQQYWRPWQEGYQNIWVRQMPGTAL 126


>gi|282856175|ref|ZP_06265458.1| tRNA methyl transferase [Pyramidobacter piscolens W5455]
 gi|282585934|gb|EFB91219.1| tRNA methyl transferase [Pyramidobacter piscolens W5455]
          Length = 346

 Score = 39.9 bits (92), Expect = 0.88,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 52/173 (30%), Gaps = 35/173 (20%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV---------DHCLRETAKDEVR 71
            ILV VSGG DS     AL ++           +A  +         D  LR       R
Sbjct: 4   KILVGVSGGVDS-----ALSALR--LRDLGYDVTAAHLILKDGEDPTD-RLRLERL--AR 53

Query: 72  YV--------SDVCSRLRIAHSVVSWKNSKPQTG-LMAAAREARYALISEHAKTINATLI 122
           +V        +  C R+         K   P    +  AA + R   + E A  +    +
Sbjct: 54  HVPVHELDCRARFCERVVRPFLDAYRKGLTPNPCVICNAALKFR--ALFELADRLGIDKV 111

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            T H        V  R +R    +          +    + W+SR       E
Sbjct: 112 ATGHYAR-----VLKRGRRWAIARTDSPKDQTYMLCRLPHEWLSRLCFPLSEE 159


>gi|253570789|ref|ZP_04848197.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839738|gb|EES67821.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|301165280|emb|CBW24851.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 426

 Score = 39.9 bits (92), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKDEVRYVSDVCSR 79
           + V+ SGG DS  LL      +   + G+ K     +D+    R++      YV  + S 
Sbjct: 25  VYVSFSGGKDSGILLHLCMDYIRMHAPGR-KLGVFHMDYEVQYRQS----TEYVERMFSN 79

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               L + H  V +K     +      R  +    +   + +  T +
Sbjct: 80  NRDILEVFHCCVPFKVPTCTSMYQQYWRPWQEGYQNIWVRQMPGTAL 126


>gi|213964113|ref|ZP_03392353.1| sulfate adenylyltransferase subunit 2 [Capnocytophaga sputigena
          Capno]
 gi|213953250|gb|EEB64592.1| sulfate adenylyltransferase subunit 2 [Capnocytophaga sputigena
          Capno]
          Length = 299

 Score = 39.9 bits (92), Expect = 0.88,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 11/76 (14%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRET-AKDEVRYVSDVCSRLRI 82
           SGG DS+ L+       +     KI F  + +D  H   E  A  +      +  R+  
Sbjct: 31 FSGGKDSITLVHLAMKAFAPM---KIPFPLVHIDTGHNFPEALAYRDA-----LAKRIGA 82

Query: 83 AHSVVSWKNSKPQTGL 98
             V   +++    GL
Sbjct: 83 ELIVRQVEDTIKAKGL 98


>gi|150006192|ref|YP_001300936.1| hypothetical protein BVU_3703 [Bacteroides vulgatus ATCC 8482]
 gi|149934616|gb|ABR41314.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 426

 Score = 39.9 bits (92), Expect = 0.88,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH--CLRETAKDEVRYVSDVCSR 79
           + V+ SGG DS  LL      +   + G+ K     +D+    R++      YV  + S 
Sbjct: 25  VYVSFSGGKDSGILLHLCMDYIRMHAPGR-KLGVFHMDYEVQYRQS----TEYVERMFSN 79

Query: 80  ----LRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLI 122
               L + H  V +K     +      R  +    +   + +  T +
Sbjct: 80  NRDILEVFHCCVPFKVPTCTSMYQQYWRPWQEGYQNIWVRQMPGTAL 126


>gi|157375185|ref|YP_001473785.1| ExsB protein [Shewanella sediminis HAW-EB3]
 gi|189029565|sp|A8FUY4|QUEC_SHESH RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
           Full=7-cyano-7-carbaguanine synthase; AltName:
           Full=PreQ(0) synthase; AltName: Full=Queuosine
           biosynthesis protein queC
 gi|157317559|gb|ABV36657.1| ExsB protein [Shewanella sediminis HAW-EB3]
          Length = 232

 Score = 39.9 bits (92), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 46/199 (23%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   L+ AL+           +   I+ D+  R +   E+     +  RL
Sbjct: 8   VVV-FSGGQDSTTCLIQALNQYD--------EVHGITFDYGQRHS--QEIEVARSLGQRL 56

Query: 81  R-IAHSVVSWKNSKP-------QTGLMAA--------------AREARYALISEH-AKTI 117
             ++H ++              +  +  +               R   +  ++   A  +
Sbjct: 57  GLVSHKILDVSMLNELAISALTRDSIEVSNELMENGLPNTFVPGRNILFLTLAGIYAYQL 116

Query: 118 NATLIMTAHTFDDQLETVYMRS--QRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
            A  ++T        ET +      R+   K M  +        D    I  P +   + 
Sbjct: 117 GADSVITG-----VCETDFSGYPDCRNDFVKTMESALNQGM---DRQCKIVTPLMWLNKA 168

Query: 176 DIRSFLLQRN-ISWCEDPS 193
           +  +   Q   +    D +
Sbjct: 169 ETWALADQYKSLELVRDET 187


>gi|110004286|emb|CAK98624.1| gmp synthase [glutamine-hydrolyzing] protein [Spiroplasma citri]
          Length = 512

 Score = 39.9 bits (92), Expect = 0.89,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETA 66
           ++  V   ++++A+SGG DS    + LH  +        + + I VD   LR+ +
Sbjct: 209 IKGKVGSDNVVLALSGGVDSSVCAVLLHKAIGK------QLTCIFVDTGLLRQDS 257


>gi|116327924|ref|YP_797644.1| PP-loop superfamily protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330806|ref|YP_800524.1| PP-loop superfamily protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|4234779|gb|AAD12947.1| unknown [Leptospira borgpetersenii]
 gi|116120668|gb|ABJ78711.1| PP-loop superfamily protein [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116124495|gb|ABJ75766.1| PP-loop superfamily protein [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 381

 Score = 39.9 bits (92), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET 65
           IE ++   +   Y    ++ +SGG DS  L          R           VD      
Sbjct: 59  IEKIKLAGKGKDYDC--ILGISGGVDSSYLAYLAKEKFGLRPL------LFHVDAGW--N 108

Query: 66  AKDEVRYVSDVCSRLRIAH--SVVSWKNSK 93
           +++ V  +  +   L++     VV+W+  K
Sbjct: 109 SQEAVNNIEKIVDGLKLDLITEVVNWEEMK 138


>gi|238893680|ref|YP_002918414.1| hypothetical protein KP1_1598 [Klebsiella pneumoniae NTUH-K2044]
 gi|238545996|dbj|BAH62347.1| hypothetical protein KP1_1598 [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 407

 Score = 39.9 bits (92), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 9/54 (16%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSA-------ISVDHC--LRE 64
          + I V+ SGG DS  +L         +                 ++ HC  LR 
Sbjct: 28 SRICVSFSGGKDSTVMLHLTAQAARLQGKKICVLFIDWEAQFSCTIAHCEKLRA 81


>gi|163755924|ref|ZP_02163041.1| GMP synthetase (glutamine-hydrolyzing) [Kordia algicida OT-1]
 gi|161324095|gb|EDP95427.1| GMP synthetase (glutamine-hydrolyzing) [Kordia algicida OT-1]
          Length = 511

 Score = 39.9 bits (92), Expect = 0.89,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E     +++ +    +++ +SGG DS    + LH  + +          I V++ L
Sbjct: 201 VEETVEALKAQLGNDKVVLGLSGGVDSSVAAMLLHKAIGE------NLYCIFVNNGL 251


>gi|319790339|ref|YP_004151972.1| argininosuccinate synthase [Thermovibrio ammonificans HB-1]
 gi|317114841|gb|ADU97331.1| argininosuccinate synthase [Thermovibrio ammonificans HB-1]
          Length = 402

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 56/205 (27%), Gaps = 49/205 (23%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRET----------AK 67
              +++A SGG D S+     +   L+DR F  I ++A   D    E           + 
Sbjct: 2   GKRVVLAYSGGLDTSV-----IVRWLADRGFEVITYTA---DVGQGEELDEIPDKAKASG 53

Query: 68  DEVRYV----SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
                V     +      +               + A +R      + E A  + A  + 
Sbjct: 54  AVEAIVDDIKEEFARDYCMPLMRAGALYEGKYPLISALSRPLIAKKLVEVAHRVGADYVA 113

Query: 124 TAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC---RREDIR 178
              T   +DQ+                           D ++ +  P        RE+  
Sbjct: 114 HGSTGKGNDQV------------------RFEASVWALDPDIEVLAPVREWEFKSREEEI 155

Query: 179 SFLLQRNISWCEDPSNTDD-RFERV 202
            +  +  I      +      ++R 
Sbjct: 156 EYAKKHGIPVV--ATKEKPYSYDRN 178


>gi|257091733|ref|YP_003165374.1| glutamine amidotransferase class-II [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044257|gb|ACV33445.1| glutamine amidotransferase class-II [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 684

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 3   LSPIESVRFFVRSLVYPAH------ILVAVSGGSDSMGLLIALHSVLSDRSF-GKIKFSA 55
           + P E+ + F+ SLV          +LV  SGG DS   L  +H     R       +  
Sbjct: 355 MHPTETRKTFIDSLVKYRRNGKEPDVLVPFSGGRDSSYGLHLIHEEFGLRPITFTYDWGM 414

Query: 56  ISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLM 99
           ++             R V+ +C +L I + +VS      +  + 
Sbjct: 415 VT---------DLARRNVARMCGQLGIPNILVSADIKAKRENIR 449


>gi|166362943|ref|YP_001655216.1| hypothetical protein MAE_02020 [Microcystis aeruginosa NIES-843]
 gi|166085316|dbj|BAG00024.1| hypothetical protein MAE_02020 [Microcystis aeruginosa NIES-843]
          Length = 269

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 57/197 (28%), Gaps = 33/197 (16%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    ++ +      L      L+A SGG DS  +    + +L       +  +A+    
Sbjct: 1   MDSQLLDKLGQLQNLLKTSEKALIAYSGGVDSTLVAKVAYDLL---GSQALAITAV---- 53

Query: 61  CLRET-AKDEVRYVSDVCSRLRIAHSVVSWKN------SKPQTGLMAAAREARYALISEH 113
               +   +E+         + I H +V  +       +          +   +  +   
Sbjct: 54  --SPSLLPEELEEAIAQADYIGIRHELVETEEMNNPNYTSNPVNRCYFCKSELHDTLKPI 111

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
           A     + ++     DD      +R  R          G+           ++   +   
Sbjct: 112 ALARGYSYVIDGVNADD------LRDYR---------PGIQAARERGARSPLAE--IGIT 154

Query: 174 REDIRSFLLQRNISWCE 190
           + ++R      N+ W +
Sbjct: 155 KSEVRQLSRYLNLPWWD 171


>gi|167527119|ref|XP_001747892.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773641|gb|EDQ87279.1| predicted protein [Monosiga brevicollis MX1]
          Length = 666

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           M    + +++    +L     +++ VSGG DS      L     +++ G  +  A+ +D+
Sbjct: 201 MVDRELGAIQEIQDTLGDKKALVL-VSGGVDSSVCAALL-----NKAVGHERVVALHIDN 254

Query: 61  CL-RETAKDEVRYVSDVCSRLRIAHSVVS 88
              R    DE   V     RL +   V+ 
Sbjct: 255 GFMR---LDESVKVKVSLERLGLPLHVID 280


>gi|86134272|ref|ZP_01052854.1| sulfate adenylyltransferase subunit 2 [Polaribacter sp. MED152]
 gi|85821135|gb|EAQ42282.1| sulfate adenylyltransferase subunit 2 [Polaribacter sp. MED152]
          Length = 311

 Score = 39.5 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 16/123 (13%)

Query: 15  SLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRY 72
              +   +L+  SGG DS+ L+             KI F  + +D  H   ET    + +
Sbjct: 33  QAQFEKPVLL-FSGGKDSITLVRLAQKAFYP---AKIPFPLLHIDTGHNFPET----IEF 84

Query: 73  VSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
              +   L +   V + +++      K ++G  A+    +   + +  +       +   
Sbjct: 85  RDRLAKELGVELIVRNVQDNIDSGRVKEESGRYASRNMLQTETLLDAIEEFGFDACIGGA 144

Query: 127 TFD 129
             D
Sbjct: 145 RRD 147


>gi|332662186|ref|YP_004444974.1| GMP synthase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331000|gb|AEE48101.1| GMP synthase (glutamine-hydrolyzing) [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 512

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 21/187 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV- 70
           ++  +    +L+A+SGG DS      L   + D            VD+  LR+    +V 
Sbjct: 210 LKEKIGSEKVLMALSGGVDSTVAATLLDRAIGD------NLICFFVDNGLLRKGEYQQVL 263

Query: 71  ---RYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAA----REARYALISEHAKTINATLIM 123
               ++    +   I      ++  K  T   A      R       +E AK      + 
Sbjct: 264 DSYEHLG--LNVHGIDAKNHFYEELKGVTNPEAKRKIIGRLFIEVFEAEAAKYPGVKWLG 321

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+V +       +    + G+ D     + L I  P     ++++R    +
Sbjct: 322 QGTIYPDVIESVSVHGPSVTIKSHHNVGGLPDK----MGLKIVEPLRMLFKDEVRRVGKE 377

Query: 184 RNISWCE 190
             I    
Sbjct: 378 LEIPVNI 384


>gi|332241152|ref|XP_003269748.1| PREDICTED: cytoplasmic tRNA 2-thiolation protein 1-like [Nomascus
           leucogenys]
          Length = 196

 Score = 39.5 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 125 AHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQR 184
            H  DD  ETV M   R  A +     G+         L   RP     ++++  +   R
Sbjct: 69  GHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGA-LPRCRPLQFASQKEVVLYAHFR 127

Query: 185 NISWCEDPSNTDDRFERVRVRRFVRDID 212
            + +  +         R   R  ++ ++
Sbjct: 128 RLDYFSEECVYAPEAFRGHARDLLKRLE 155


>gi|283465283|gb|ADB23124.1| GMP synthase [Rhodopirellula baltica]
          Length = 303

 Score = 39.5 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS  +   L+  +        + S I VD+  LR+    E +
Sbjct: 150 IRKQVGDKRVICGLSGGVDSSVVAALLYKAI------GPQLSCILVDNGLLRKN---EQQ 200

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISE----HAKTINATL 121
            V  +  +  +    VV  ++                R   +A I       A+  +A  
Sbjct: 201 IVLEEFSNHFKTDLHVVEAEDRFLADLAGIDEPQEKRRRIGHAFIECFKDEAARIEDAHF 260

Query: 122 IMTAHTFDDQLET 134
           +     + D +E+
Sbjct: 261 LAQGTLYPDVIES 273


>gi|189485551|ref|YP_001956492.1| NAD+ synthetase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287510|dbj|BAG14031.1| NAD+ synthetase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 630

 Score = 39.5 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 26/130 (20%)

Query: 23  LVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRET---AKDEVRYVSDVCS 78
           ++ +SGG DS + LL  + S        K    A+++          +   V  VS++  
Sbjct: 347 VLGISGGLDSCLALLAVVRSY-EILGRSKKDIIAVTM-----PGPGTSLKTVESVSELAE 400

Query: 79  RLRI------------AHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            L I             H      + K  T    A    R  ++ + A      +I T  
Sbjct: 401 ALGIQIRKIPITDIVRKHLTDIKHSGKEDTVYENAQARERTQILMDIANAEEGLVIGTG- 459

Query: 127 TFDDQLETVY 136
              D  E   
Sbjct: 460 ---DLSENAL 466


>gi|166030634|ref|ZP_02233463.1| hypothetical protein DORFOR_00300 [Dorea formicigenerans ATCC
           27755]
 gi|166029636|gb|EDR48393.1| hypothetical protein DORFOR_00300 [Dorea formicigenerans ATCC
           27755]
          Length = 408

 Score = 39.5 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 53/207 (25%), Gaps = 49/207 (23%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS---- 74
              +++A SGG D+         +   +           ++    E              
Sbjct: 2   KEKVVLAYSGGLDTTA------VIPWLKETFGYDVICCCINCGQGEELDGLEERAKMAGA 55

Query: 75  ----------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
                     D C    +                 A AR A    + E A+   A  I  
Sbjct: 56  SKLYIEDIIDDFCDNYIMPCVKAHAVYENKYLLGTAMARPAIAKKLVEIARKEGAVAICH 115

Query: 125 AHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC------RRED 176
             T   +DQ+               +G++ +        ++ I  P+          RED
Sbjct: 116 GATGKGNDQI------------RFELGITALAP------DIKIIAPWRMTDLWKMESRED 157

Query: 177 IRSFLLQRNISWCEDPSNTDDRFERVR 203
             ++     I    D S     + R R
Sbjct: 158 EIAYCKAHGIDLPFDAS---HSYSRDR 181


>gi|126668433|ref|ZP_01739390.1| GMP synthase, PP-ATPase domain/subunit [Marinobacter sp. ELB17]
 gi|126627142|gb|EAZ97782.1| GMP synthase, PP-ATPase domain/subunit [Marinobacter sp. ELB17]
          Length = 525

 Score = 39.5 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +R  V    +L+ +SGG DS      LH  + D      + + + VD+ L
Sbjct: 221 IREQVGTDKVLLGLSGGVDSSVTAALLHKAIGD------QLTCVFVDNGL 264


>gi|237752293|ref|ZP_04582773.1| GMP synthase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375782|gb|EEO25873.1| GMP synthase [Helicobacter winghamensis ATCC BAA-430]
          Length = 852

 Score = 39.5 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 64/181 (35%), Gaps = 25/181 (13%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCS 78
           + +L AVSGG DS  +   L+  + +          + VD   LR+  ++ V   +    
Sbjct: 553 SKVLCAVSGGVDSSVVATLLYRAIGE------NLIPVFVDTGLLRKGEREAVE--AMFRE 604

Query: 79  RLRIAHSVVSWKN------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            L++   V   +              K +  +     E   A   +H        +    
Sbjct: 605 NLKVPLIVADARELFLGRLKGVTDPEKKRKIIGETFIEVFEAEAKKHNTKGEIKFLAQGT 664

Query: 127 TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
            + D +E+V ++      +    + G+ + + ++    +  P     ++++R+   +  +
Sbjct: 665 LYPDVIESVSVKGPSKTIKSHHNVGGLPEWMKFE----LIEPLRELFKDEVRALGRELGM 720

Query: 187 S 187
            
Sbjct: 721 P 721


>gi|237751009|ref|ZP_04581489.1| guanosine monophosphate synthetase GuaA [Helicobacter bilis ATCC
            43879]
 gi|229373454|gb|EEO23845.1| guanosine monophosphate synthetase GuaA [Helicobacter bilis ATCC
            43879]
          Length = 1864

 Score = 39.5 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 64/181 (35%), Gaps = 25/181 (13%)

Query: 20   AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVCS 78
            + +L AVSGG DS  +   L+  + +          + VD   LR+  ++ V   +    
Sbjct: 1565 SKVLCAVSGGVDSSVVATLLYRAIGE------NLIPVFVDTGLLRKGEREAVE--AMFRE 1616

Query: 79   RLRIAHSVVSWKN------------SKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
             L++   V   +              K +  +     E   A   +H        +    
Sbjct: 1617 NLKVPLIVADARELFLGRLKGVTDPEKKRKIIGETFIEVFEAEAKKHNTKGEIKFLAQGT 1676

Query: 127  TFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNI 186
             + D +E+V ++      +    + G+ + + ++    +  P     ++++R+   +  +
Sbjct: 1677 LYPDVIESVSVKGPSKTIKSHHNVGGLPEWMKFE----LIEPLRELFKDEVRALGRELGM 1732

Query: 187  S 187
             
Sbjct: 1733 P 1733


>gi|167585743|ref|ZP_02378131.1| sulfate adenylyltransferase, small subunit [Burkholderia ubonensis
           Bu]
          Length = 320

 Score = 39.5 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 5/109 (4%)

Query: 26  VSGGSDSMGLLIALHSV--LSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLR 81
            SGG DS+ +L        L       + F  + +D  H   E      R   ++ + L 
Sbjct: 48  FSGGKDSVVVLHLALKAFGLGANRRTSLPFPLVHIDTGHNYDEVIDFRDRRAQEIGAELI 107

Query: 82  IAHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
           + H   S +           +R A  A+ + E  +    T ++     D
Sbjct: 108 VGHVEDSIRRGTVVLRRETDSRNAAQAVTLLETIEQHGFTAMIGGARRD 156


>gi|309379634|emb|CBX21805.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 218

 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 56/195 (28%), Gaps = 54/195 (27%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
            SGG DS   L     + + +++G+    AI+  +  R     E+   + +   L +  +
Sbjct: 10  FSGGQDSTTCL-----IQAVQTYGRENVRAITFQYGQRH--AVELERAAWIAQDLGVPQT 62

Query: 86  VVSWKNSK--PQTGLMAAAREA--------------RYALI----SEHAKTINATLIMTA 125
           +V     K      LM  A                 R AL     + +AK      I+  
Sbjct: 63  LVDLNLMKTITHNALMDEAAAIETAENGVPNTFVDGRNALFLLYAAIYAKGQGIRHIIAG 122

Query: 126 HTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLW----------ISRPFLRCRRE 175
                  ET              G     D  +  +N+           I  P +   + 
Sbjct: 123 -----VCET-----------DFSGYPDCRDVFVKSMNVTLNLAMDYDFQIHTPLMYLTKA 166

Query: 176 DIRSFLLQRN-ISWC 189
              +   +   + + 
Sbjct: 167 QTWALADEMGVLDYI 181


>gi|307719550|ref|YP_003875082.1| hypothetical protein STHERM_c18740 [Spirochaeta thermophila DSM
           6192]
 gi|306533275|gb|ADN02809.1| hypothetical protein STHERM_c18740 [Spirochaeta thermophila DSM
           6192]
          Length = 292

 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 14/175 (8%)

Query: 1   MFLSPIES-VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M LS IE      V  L     I V  SGG DS  L +    VL   +          V 
Sbjct: 18  MDLSLIEKEADRLVEVLKGYGRIAVGFSGGVDSTFLAVVAREVLGKDAVRAYTLLPPHV- 76

Query: 60  HCLRETAKDEVRYVSDVCSRLRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAK 115
                 A+ E    +++  R  + H ++      +  +         +   +  I   A+
Sbjct: 77  ------ARWEAAEAAELAQRFDLTHRLIEVPFVEEVRENPPDRCYRCKRILFGAIKRMAE 130

Query: 116 TINATLIMTAHTFDDQLETVY-MRSQRDYAEKG-MGLSGMCDTILYDLNLWISRP 168
                ++       D  E    MR+ R+   +  +  +G+    + DL+     P
Sbjct: 131 EDGYPVVCDGTNASDPEEDRPGMRALRELGVRSPLREAGLTKERIRDLSRAFGLP 185


>gi|268680794|ref|YP_003305225.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618825|gb|ACZ13190.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 339

 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 42/189 (22%)

Query: 24  VAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VSD 75
           +A+  SGG DS      L     +     +K               D+ ++      +  
Sbjct: 3   IALLMSGGIDSSYCAYLLKEEGHEVVGIYLKLH------------DDDKKHGVNIANIEK 50

Query: 76  VCSRLRIAHSVVSWKNSKPQT---------------GLMAAAR-EARYALISEHAKTINA 119
           V   L I   ++  K    +                   A    + ++    E A     
Sbjct: 51  VSQHLGIKTHIIDAKALFKEQIYDYFVRSYEQGLTPNPCAFCNPKMKFGFAFEKALEFGC 110

Query: 120 TLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRS 179
             I T H      E     ++    ++   L G+   ++      I  P    ++E+I+ 
Sbjct: 111 EKIATGHYAR-VKEGHIQEAKDKSKDQSYFLFGLKREVIEK----IIFPLGEMKKEEIKP 165

Query: 180 FLLQRNISW 188
             L++ + W
Sbjct: 166 IALEK-LPW 173


>gi|169350931|ref|ZP_02867869.1| hypothetical protein CLOSPI_01708 [Clostridium spiroforme DSM 1552]
 gi|169291993|gb|EDS74126.1| hypothetical protein CLOSPI_01708 [Clostridium spiroforme DSM 1552]
          Length = 446

 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%)

Query: 131 QLETVY----MRSQR----DYAEKGMGLSGMCDTILY---DLNLWISRPFLRCRREDIRS 179
           Q ETV+    M+  +    D      GL      +LY       +   P  + RR +I  
Sbjct: 199 QAETVFDDCHMKVVKLPADDQGLTLEGLKMYNLKLLYLNSSSGGYHGHPIKQQRRLEIIE 258

Query: 180 FLLQRNISWCEDPSNTDDRF 199
           +  +  I   ED  N + ++
Sbjct: 259 YAKKNGIYIIEDDHNGELKY 278


>gi|88603430|ref|YP_503608.1| thiamine biosynthesis protein [Methanospirillum hungatei JF-1]
 gi|88188892|gb|ABD41889.1| thiamine biosynthesis protein [Methanospirillum hungatei JF-1]
          Length = 369

 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 35/177 (19%)

Query: 23  LVAV-SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLR 81
           LVA+ SGG DS   +  +    +      +K +    D     ++++    + +   + +
Sbjct: 171 LVALHSGGIDSPVAMYMMMKRGTILHPVYVKIAPFHDD-----SSEERAHLIVEHLRKYQ 225

Query: 82  IAH--------SVVSWKNSKPQTGLMAAA-----REARYALISEHAKTINATLIMTAHTF 128
                       V + +    +  L   A     R   Y +  + A+ I A  I+T    
Sbjct: 226 PDLTLEVIDDGHVYATRMELKKRDLEKYACVLCKRHL-YRIAEQKARAIGAKGIVTG--- 281

Query: 129 DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
               E+      +  ++    L  + D +    ++ + RP +   +E+  +   +  
Sbjct: 282 ----ES----LAQVASQTLDNLYVLDDAV----SMPVYRPLIGFDKEETIAVAKKIG 326


>gi|324114737|gb|EGC08705.1| phosphoadenosine phosphosulfate reductase [Escherichia fergusonii
          B253]
          Length = 403

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 1  MFLSPIESVRFFVRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
          +F++ +++ R  +   +     + V+ SGG DS  +L     +    +    K   + +D
Sbjct: 8  LFINVLDAARERIHWTLKNLDRVCVSFSGGKDSGVMLHLTAQLARQLNK---KIFVLFID 64


>gi|317051162|ref|YP_004112278.1| GMP synthase large subunit [Desulfurispirillum indicum S5]
 gi|316946246|gb|ADU65722.1| GMP synthase, large subunit [Desulfurispirillum indicum S5]
          Length = 518

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           + IES    +R  V  A +L A+SGG DS    + +H  + DR       + + V++  L
Sbjct: 206 NFIESKIAEIRETVGDASVLCALSGGVDSSVAAVLIHRAIGDR------LTCVFVNNGLL 259

Query: 63  RETAKDEVRYVSD 75
           R+    E   V  
Sbjct: 260 RKN---EAEAVVK 269


>gi|239625398|ref|ZP_04668429.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519628|gb|EEQ59494.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 410

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 60/202 (29%), Gaps = 39/202 (19%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD-------------HCLRET 65
              +++A SGG D+         +   +     +     +D               L   
Sbjct: 2   KEKVILAYSGGLDTTT------IIPWLKENFGYEVICCCIDCGQGNELDGLDERAKLSGA 55

Query: 66  AKD-EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMT 124
           +K      V D C    +     +           + AR A    + + A+   AT I  
Sbjct: 56  SKLYIEDLVDDFCDNYIMPCVKANAVYEYKYLLGTSMARPAIAKCLVDIARKEGATAICH 115

Query: 125 AHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
             T   +DQ+     R +         L  +    + D+       +    RED   +  
Sbjct: 116 GATGKGNDQI-----RFELGIKALAPDLKIIAPWRMTDV-------WTIQSREDEIEYCK 163

Query: 183 QRNISWCED-PSNTDDRFERVR 203
           Q  I    D P + D+ + R R
Sbjct: 164 QHGI----DLPFSADNSYSRDR 181


>gi|87308580|ref|ZP_01090720.1| ExsB protein [Blastopirellula marina DSM 3645]
 gi|87288672|gb|EAQ80566.1| ExsB protein [Blastopirellula marina DSM 3645]
          Length = 234

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 10/74 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI-AH 84
          +SGG DS  +L    S            SA++  +  R  +  EV           +  H
Sbjct: 8  LSGGLDSTTMLAIAKS-------QGFTISALTFAYGQRHQS--EVESARRTAKAFNVQDH 58

Query: 85 SVVSWKNSKPQTGL 98
          +V+           
Sbjct: 59 TVIDIDLRAFGGSA 72


>gi|75760871|ref|ZP_00740884.1| LPS biosynthesis protein WbpG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228905551|ref|ZP_04069500.1| LPS biosynthesis protein WbpG [Bacillus thuringiensis IBL 4222]
 gi|74491633|gb|EAO54836.1| LPS biosynthesis protein WbpG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228854087|gb|EEM98796.1| LPS biosynthesis protein WbpG [Bacillus thuringiensis IBL 4222]
          Length = 323

 Score = 39.5 bits (91), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 22  ILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY--VSDVCSR 79
           I++A SGG DS   L  L      +   K+   A++ D+        E  Y  + +VC+ 
Sbjct: 53  IVLAYSGGKDSTYTLYLL------KEKYKLNVLAVTFDNGF----LAEETYSNIRNVCAS 102

Query: 80  LR 81
           L 
Sbjct: 103 LN 104


>gi|322378861|ref|ZP_08053278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Helicobacter suis HS1]
 gi|322379966|ref|ZP_08054241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Helicobacter suis HS5]
 gi|321147605|gb|EFX42230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Helicobacter suis HS5]
 gi|321148671|gb|EFX43154.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Helicobacter suis HS1]
          Length = 345

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 20/84 (23%)

Query: 24 VAV--SGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRY------VSD 75
          +AV  SGG DS      L     D     +K       H        E ++        +
Sbjct: 3  IAVLMSGGVDSSYSAYLLKQAGHDLLGLYLKL------HG------KEEKHAFYIKNCQE 50

Query: 76 VCSRLRIAHSVVSWKNSKPQTGLM 99
          V S L I   VV  +    +    
Sbjct: 51 VASFLNIPFEVVDLQEPFKKQVYE 74


>gi|317152431|ref|YP_004120479.1| asparagine synthase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942682|gb|ADU61733.1| asparagine synthase (glutamine-hydrolyzing) [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 626

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS  L++AL    S R                RE   DE  Y   V + L   H+
Sbjct: 270 LSGGIDS-SLVVALMQAQSSRPVKTFSI-------GFREQEFDEAHYAKAVAAHLGTDHT 321

Query: 86  VVSWKNSK 93
            +      
Sbjct: 322 ELYVTAED 329


>gi|310639675|ref|YP_003944433.1| atpase, confers aluminum resistance [Paenibacillus polymyxa SC2]
 gi|309244625|gb|ADO54192.1| Putative ATPase, confers aluminum resistance [Paenibacillus
           polymyxa SC2]
          Length = 219

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 33/126 (26%)

Query: 22  ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
           ++V  SGG DS   LL AL            +   +S  +  R   K E+   S++   L
Sbjct: 6   LVV-FSGGQDSTTCLLWALKEYD--------EVQTVSFQYGQRH--KLELECASEIAKEL 54

Query: 81  RIAHSV-------------VSWKNSKPQTGLMAA-------AREARY-ALISEHAKTINA 119
            + H V             ++ ++ + + G   A        R   + +  +  AK +  
Sbjct: 55  NVKHHVLDLNLLNQLAPNALTREDIEIEAGSEGALPNTFVDGRNMLFLSFAAILAKQLGY 114

Query: 120 TLIMTA 125
             I+T 
Sbjct: 115 YHIITG 120


>gi|283853758|ref|ZP_06370984.1| ExsB family protein [Desulfovibrio sp. FW1012B]
 gi|283570852|gb|EFC18886.1| ExsB family protein [Desulfovibrio sp. FW1012B]
          Length = 272

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSR 79
             +LVA SGG+DS  +L A+   L   +   +  +A         T   EV    +    
Sbjct: 17  GSVLVAFSGGTDSTLVLRAVLDALPGENVLAVTLAAPY-------TPAFEVAAAREAAKS 69

Query: 80  LRIAHSVVSW----KNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDD 130
           +   H VV+                A +   + L+++ A       +      DD
Sbjct: 70  MGARHEVVAVPFPEAVRDNPPDRCYACKRLLFGLLADRAAGRGLAHVCDGTNADD 124


>gi|303287891|ref|XP_003063234.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455066|gb|EEH52370.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 546

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E VR   R +   AH++ A+SGG DS      +H  + DR           VD+ L
Sbjct: 229 LEIVR---RKVGPDAHVICALSGGVDSAVAATLVHKAIGDR------LHCCFVDNGL 276


>gi|110667066|ref|YP_656877.1| NAD synthetase [Haloquadratum walsbyi DSM 16790]
 gi|109624813|emb|CAJ51221.1| NAD(+) synthase (glutamine-hydrolyzing) [Haloquadratum walsbyi DSM
           16790]
          Length = 275

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 52/174 (29%), Gaps = 34/174 (19%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---RETAKD----EVRYVSD 75
           ++ +SGG DS  +     + L   +            H L    E   D    +  +V  
Sbjct: 45  VLGLSGGIDSTTVADMAVNALGAENV-----------HGLVMPSEVNDDANMSDAEWV-- 91

Query: 76  VCSRLRIAHSVVSWKNSKPQTGLMA--AAREARYALISEHAKTINATLIMTAHTFDDQLE 133
               L I + V+  +    ++   A   A + + A+ + + +T        A+  +    
Sbjct: 92  -AEELDIPYEVIEIQPIA-ESFFEAIPEAADDQMAVGNVYVRTRAVLNYFLANHEN---- 145

Query: 134 TVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
               +       +   L+G      Y        P     ++ +R       I 
Sbjct: 146 ----KIVLGTGNRSEALTGYYTK--YGDQAVDCNPIGNLYKQQVRQLAASVGIP 193


>gi|315607764|ref|ZP_07882757.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae ATCC 33574]
 gi|315250233|gb|EFU30229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Prevotella buccae ATCC 33574]
          Length = 359

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 32/141 (22%)

Query: 17  VYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC------LRETAKDEV 70
           +    I V +SGG DS  ++  L ++        IK                  ++++++
Sbjct: 7   LKDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKI-------GPEEQEEWDCSSEEDL 59

Query: 71  RYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLM-----AAAREARYALISEHA 114
              + V +R      VV            +   K + G          R  ++       
Sbjct: 60  EMATAVAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAFDAKM 119

Query: 115 KTINATLIMTAHTFDDQLETV 135
              +  LI T H    Q E +
Sbjct: 120 -GHDYDLIATGHYA--QTEWI 137


>gi|283465232|gb|ADB23099.1| GMP synthase [Rhodopirellula sp. 7C]
          Length = 279

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS  +   L+  +        + S I VD+  LR+    E +
Sbjct: 146 IRKQVGDKRVICGLSGGVDSSVVAALLYKAI------GPQLSCILVDNGLLRKN---EQQ 196

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISE----HAKTINATL 121
            V  +  +  +    VV  ++                R   +A I       A+  +A  
Sbjct: 197 IVLEEFSNHFKTDLHVVEAEDRFLADLAGIDEPQEKRRRIGHAFIECFKDEAARIEDAHF 256

Query: 122 IMTAHTFDDQLET 134
           +     + D +E+
Sbjct: 257 LAQGTLYPDVIES 269


>gi|149372156|ref|ZP_01891426.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [unidentified eubacterium SCB49]
 gi|149354923|gb|EDM43485.1| bifunctional GMP synthase/glutamine amidotransferase protein
           [unidentified eubacterium SCB49]
          Length = 509

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++  +    +++ +SGG DS    I LH  +            I V++ L
Sbjct: 207 LQKKIGDDKVVLGLSGGVDSTVAAILLHKAIGK------NLYCIFVNNGL 250


>gi|92117038|ref|YP_576767.1| NAD synthetase [Nitrobacter hamburgensis X14]
 gi|91799932|gb|ABE62307.1| NH(3)-dependent NAD(+) synthetase [Nitrobacter hamburgensis X14]
          Length = 583

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 31/136 (22%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFG---KIKFSAISVDHCLRE 64
           +R +V    +P  +L+ VSGG DS +   IA+ ++ ++R  G     +F+A        +
Sbjct: 282 LRDYVHKNGFPG-VLLGVSGGIDSALCAAIAVDALGAERVRGVMLPFRFTA--------Q 332

Query: 65  TAKDEVRYVSDVCSRLRIAHSVV---------------SWKNSKPQTGLMAAAREARYAL 109
            + D+    + +   L I + V+               ++               AR  L
Sbjct: 333 VSLDDA---ATLAKALGIRYEVLPIAPAVNGFEEVLSGTFAGLPRDITEENLQARARGTL 389

Query: 110 ISEHAKTINATLIMTA 125
           +   +  + A ++ T 
Sbjct: 390 LMAISNKLGAMVVTTG 405


>gi|16332301|ref|NP_443029.1| argininosuccinate synthase [Synechocystis sp. PCC 6803]
 gi|2492989|sp|P77973|ASSY_SYNY3 RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|1653931|dbj|BAA18841.1| argininosuccinate synthetase [Synechocystis sp. PCC 6803]
          Length = 400

 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 53/192 (27%)

Query: 20  AHILVAVSGGSD-SMG---LLI---------ALHSVLSDRSFGKIKFSAISVDHCLRETA 66
             +++A SGG D S+    L+              +      G I+  A      LR  A
Sbjct: 5   KKVVLAYSGGVDTSVCIPYLMHEWGVEEVITLAADLGQGDELGPIQEKA------LRCGA 58

Query: 67  KDE------VRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAA-AREARYALISEHAKTINA 119
            +         +V +   R     S+ +    + +  L  A AR     ++ E A+   A
Sbjct: 59  VESLVIDGKEEFVKEYAFR-----SIQANALYENRYPLSTALARPLIAKMLVEAAEKYGA 113

Query: 120 TLIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPF--LRCRRE 175
             +    T   +DQ+                        +  + NL +  P    +  RE
Sbjct: 114 DAVAHGCTGKGNDQV------------------RFDISIMALNPNLKVLAPAREWKMSRE 155

Query: 176 DIRSFLLQRNIS 187
           +  ++  +  + 
Sbjct: 156 ETIAYGERYGVE 167


>gi|311746687|ref|ZP_07720472.1| sulfate adenylyltransferase, small subunit [Algoriphagus sp. PR1]
 gi|311302560|gb|EAZ82524.2| sulfate adenylyltransferase, small subunit [Algoriphagus sp. PR1]
          Length = 301

 Score = 39.5 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 18/129 (13%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD--HCLRETA 66
           +R  V     PA +    SGG DS+ L              KI F  I +D  H   ET 
Sbjct: 20  IREVVSQFEKPALL---FSGGKDSILLAHLAKKAFYP---AKIPFPLIHIDTGHNFPET- 72

Query: 67  KDEVRYVSDVCSRLRIAHSVVSWKNS------KPQTGLMAAAREARYALISEHAKTINAT 120
              + +   +   L +   V S ++S      + +TG+ A+    +   + +  + +   
Sbjct: 73  ---LEFRDALVKELGVQLVVGSVQDSIDKGRVREETGVNASRNALQTVTLLDTLEELKID 129

Query: 121 LIMTAHTFD 129
             M     D
Sbjct: 130 AAMGGARRD 138


>gi|281177615|dbj|BAI53945.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 231

 Score = 39.5 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|269964053|ref|ZP_06178358.1| ExsB protein [Vibrio harveyi 1DA3]
 gi|269831194|gb|EEZ85348.1| ExsB protein [Vibrio harveyi 1DA3]
          Length = 159

 Score = 39.5 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +  AI+ D+  R   K E+     V   L
Sbjct: 5  VVV-FSGGQDSTTCLVQALKEFD--------EVHAITFDYGQRH--KLEIEVAEKVAKDL 53

Query: 81 RIAHSVV 87
           +A   V
Sbjct: 54 SVAAHKV 60


>gi|15800174|ref|NP_286186.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          EDL933]
 gi|15829752|ref|NP_308525.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. Sakai]
 gi|168747880|ref|ZP_02772902.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4113]
 gi|168754549|ref|ZP_02779556.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4401]
 gi|168760401|ref|ZP_02785408.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4501]
 gi|168768399|ref|ZP_02793406.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4486]
 gi|168777140|ref|ZP_02802147.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4196]
 gi|168778937|ref|ZP_02803944.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4076]
 gi|168786295|ref|ZP_02811302.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC869]
 gi|168798008|ref|ZP_02823015.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC508]
 gi|195936008|ref|ZP_03081390.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4024]
 gi|208805824|ref|ZP_03248161.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4206]
 gi|208816134|ref|ZP_03257313.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4045]
 gi|208823253|ref|ZP_03263571.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4042]
 gi|209396500|ref|YP_002269091.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4115]
 gi|217325252|ref|ZP_03441336.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. TW14588]
 gi|254791628|ref|YP_003076465.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. TW14359]
 gi|261223927|ref|ZP_05938208.1| enzyme in preQ0 biosynthesis [Escherichia coli O157:H7 str.
          FRIK2000]
 gi|261256359|ref|ZP_05948892.1| enzyme in preQ0 biosynthesis [Escherichia coli O157:H7 str.
          FRIK966]
 gi|291281351|ref|YP_003498169.1| Queuosine biosynthesis protein queC [Escherichia coli O55:H7 str.
          CB9615]
 gi|81766178|sp|Q8XE52|QUEC_ECO57 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764337|sp|B5Z3V1|QUEC_ECO5E RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|12513306|gb|AAG54794.1|AE005223_9 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13359955|dbj|BAB33921.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187767546|gb|EDU31390.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4196]
 gi|188017662|gb|EDU55784.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4113]
 gi|189003020|gb|EDU72006.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4076]
 gi|189357982|gb|EDU76401.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4401]
 gi|189362373|gb|EDU80792.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4486]
 gi|189369159|gb|EDU87575.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4501]
 gi|189373665|gb|EDU92081.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC869]
 gi|189379336|gb|EDU97752.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC508]
 gi|208725625|gb|EDZ75226.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4206]
 gi|208732782|gb|EDZ81470.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4045]
 gi|208737446|gb|EDZ85130.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4042]
 gi|209157900|gb|ACI35333.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. EC4115]
 gi|209778638|gb|ACI87631.1| hypothetical protein ECs0498 [Escherichia coli]
 gi|209778640|gb|ACI87632.1| hypothetical protein ECs0498 [Escherichia coli]
 gi|209778642|gb|ACI87633.1| hypothetical protein ECs0498 [Escherichia coli]
 gi|209778644|gb|ACI87634.1| hypothetical protein ECs0498 [Escherichia coli]
 gi|209778646|gb|ACI87635.1| hypothetical protein ECs0498 [Escherichia coli]
 gi|217321473|gb|EEC29897.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. TW14588]
 gi|254591028|gb|ACT70389.1| enzyme in preQ0 biosynthesis [Escherichia coli O157:H7 str.
          TW14359]
 gi|290761224|gb|ADD55185.1| Queuosine biosynthesis protein queC [Escherichia coli O55:H7 str.
          CB9615]
 gi|320192860|gb|EFW67500.1| Queuosine Biosynthesis QueC ATPase [Escherichia coli O157:H7 str.
          EC1212]
 gi|320638439|gb|EFX08153.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. G5101]
 gi|320643820|gb|EFX12943.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H-
          str. 493-89]
 gi|320649171|gb|EFX17749.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H-
          str. H 2687]
 gi|320656064|gb|EFX23980.1| queuosine biosynthesis protein QueC [Escherichia coli O55:H7 str.
          3256-97 TW 07815]
 gi|320661214|gb|EFX28645.1| queuosine biosynthesis protein QueC [Escherichia coli O55:H7 str.
          USDA 5905]
 gi|320665190|gb|EFX32283.1| queuosine biosynthesis protein QueC [Escherichia coli O157:H7
          str. LSU-61]
 gi|326341208|gb|EGD65000.1| Queuosine Biosynthesis QueC ATPase [Escherichia coli O157:H7 str.
          1044]
 gi|326346017|gb|EGD69756.1| Queuosine Biosynthesis QueC ATPase [Escherichia coli O157:H7 str.
          1125]
          Length = 231

 Score = 39.5 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|21227320|ref|NP_633242.1| GMP synthase subunit B [Methanosarcina mazei Go1]
 gi|44887898|sp|Q8PXK0|GUAAB_METMA RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B;
           AltName: Full=GMP synthetase
 gi|20905674|gb|AAM30914.1| GMP synthase [Methanosarcina mazei Go1]
          Length = 305

 Score = 39.5 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 63/180 (35%), Gaps = 21/180 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAKDEVR 71
           +   +     ++A+SGG DS       +  + DR         I +D  L R+   + +R
Sbjct: 15  ISKEIKDGKAIIALSGGVDSSVCAELAYRAIGDRLQP------IYIDTGLMRKGETERIR 68

Query: 72  YVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREAR----YALISEHAKTINATLIMTAHT 127
           ++    + L + ++   +  +          R+A       +  E A+ + A  ++    
Sbjct: 69  HIFSHMN-LDVVYAKDRFLAALAGVTDPEEKRKAIGETFIRVFEEEARKLAADYLIQGTI 127

Query: 128 FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRNIS 187
           + D++E           +    + G+   + +     I  P     ++++R       + 
Sbjct: 128 YPDRIE------SEGGIKSHHNVGGLPSVMDFKK---IVEPIEDLYKDEVREVAWALQLP 178


>gi|283465291|gb|ADB23128.1| GMP synthase [Rhodopirellula sp. SWK21]
          Length = 294

 Score = 39.5 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R  V    ++  +SGG DS  +   L+  +        + S I VD+  LR+    E +
Sbjct: 151 IRKQVGDKRVICGLSGGVDSSVVAALLYKAI------GPQLSCILVDNGLLRKN---EQQ 201

Query: 72  YV-SDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYALISE----HAKTINATL 121
            V  +  +  +    VV  ++                R   +A I       A+  +A  
Sbjct: 202 IVLEEFSNHFKTDLHVVEAEDRFLADLAGIDEPQEKRRRIGHAFIECFKDEAARIEDAHF 261

Query: 122 IMTAHTFDDQLET 134
           +     + D +E+
Sbjct: 262 LAQGTLYPDVIES 274


>gi|242240286|ref|YP_002988467.1| exsB protein [Dickeya dadantii Ech703]
 gi|242132343|gb|ACS86645.1| exsB protein [Dickeya dadantii Ech703]
          Length = 231

 Score = 39.5 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 13/71 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +    +++  RL
Sbjct: 5  VVV-FSGGQDSTTCLIQALQQYD--------EVHCVTFDYGQRHRAEIDAA--AELTQRL 53

Query: 81 RI-AHSVVSWK 90
             AH +++ +
Sbjct: 54 GARAHKILNVE 64


>gi|254411685|ref|ZP_05025461.1| Phosphoadenosine phosphosulfate reductase family protein
          [Microcoleus chthonoplastes PCC 7420]
 gi|196181407|gb|EDX76395.1| Phosphoadenosine phosphosulfate reductase family protein
          [Microcoleus chthonoplastes PCC 7420]
          Length = 270

 Score = 39.5 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 20 AHILVAVSGGSDSMGLLIALHSVLSDRSF 48
           HIL  +SGG DS  L + LH  + D  +
Sbjct: 7  RHIL-GLSGGKDSTALAVLLHKEIPDMEY 34


>gi|167845666|ref|ZP_02471174.1| argininosuccinate synthase [Burkholderia pseudomallei B7210]
          Length = 404

 Score = 39.5 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 47/191 (24%)

Query: 18  YPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
            P HIL+A SGG D S  L   L      +     + +A   +   +E   D  R     
Sbjct: 2   KPKHILLAYSGGLDTSTAL-HFL------KRHFDCRVTAYCANLGQKE---DWERM-KRR 50

Query: 77  CSRLRIAHSVVS-----------WKNSKPQTGLMA-------AAREARYALISEHAKTIN 118
            +       V+            +   K               AR A    + E+A+  +
Sbjct: 51  AAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLARPAIVKGLIEYARKHD 110

Query: 119 ATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              +    T   +DQ+     R +         L  +    ++ L            RED
Sbjct: 111 VDCLSHGCTQKGNDQV-----RFEMAAKILAPDLPTVAPWRIWSLQ----------SRED 155

Query: 177 IRSFLLQRNIS 187
           + ++  Q  I 
Sbjct: 156 LFAYCQQHGIP 166


>gi|222823759|ref|YP_002575333.1| argininosuccinate synthetase [Campylobacter lari RM2100]
 gi|254807514|sp|B9KG97|ASSY_CAMLR RecName: Full=Argininosuccinate synthase; AltName:
           Full=Citrulline--aspartate ligase
 gi|222538981|gb|ACM64082.1| argininosuccinate synthetase [Campylobacter lari RM2100]
          Length = 406

 Score = 39.5 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 61/205 (29%), Gaps = 53/205 (25%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +++A SGG D S+     L  +  +     + F+A   D        +E+        
Sbjct: 6   KKVVLAYSGGLDTSI----ILKWLQDEYKSEVVTFTA---DIGQ----GEELEPARKKAL 54

Query: 79  RLRIAHSVVSWKNSKPQ------------TGLMAA--------AREARYALISEHAKTIN 118
            L +    +  K+ K +              +           AR      + E A   N
Sbjct: 55  SLGVKEENIFIKDLKDEFVKDYVFAMFRANAIYEGEYLLGTSIARPLIAKALVEIANKTN 114

Query: 119 ATLI---MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
           A  I    T    +DQ+     R +         L+ +     +DLN           RE
Sbjct: 115 ADAISHGATG-KGNDQV-----RFELGALALNPNLAIIAPWREWDLN----------SRE 158

Query: 176 DIRSFLLQRNISWCE--DPSNTDDR 198
            + ++  +  I   +  D S     
Sbjct: 159 KLLAYAQKHGIDIVKKADKSPYSMD 183


>gi|312964531|ref|ZP_07778787.1| queuosine biosynthesis protein queC [Escherichia coli 2362-75]
 gi|312290765|gb|EFR18642.1| queuosine biosynthesis protein queC [Escherichia coli 2362-75]
          Length = 231

 Score = 39.5 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|270293085|ref|ZP_06199296.1| ExsB protein [Streptococcus sp. M143]
 gi|270279064|gb|EFA24910.1| ExsB protein [Streptococcus sp. M143]
          Length = 217

 Score = 39.5 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 10/73 (13%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +   + ++V  SGG DS   L                  A++  +  R     E++   +
Sbjct: 1  MKRHSALVV-FSGGQDSTTCLFWAKEHYK-------TVEAVTFAYGQRHH--LEIQVARE 50

Query: 76 VCSRLRIAHSVVS 88
          +     I H ++ 
Sbjct: 51 IAKEQGIRHHILD 63


>gi|240950405|ref|ZP_04754659.1| sulfate adenylyltransferase subunit 2 [Actinobacillus minor NM305]
 gi|240295072|gb|EER45922.1| sulfate adenylyltransferase subunit 2 [Actinobacillus minor NM305]
          Length = 308

 Score = 39.5 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 26  VSGGSDSMGLLIAL-HSVLSDRSFGKIKFSAISVD--HCLRETAKDEVRYVSDVCSRLRI 82
            SGG DS+ LL     +   +     + F  + +D  H   E  +     V  + ++L +
Sbjct: 37  FSGGKDSVVLLALARKAFQLEGRELVLPFPLVHIDTGHNYPEVIQFRDEQVRKLNAKLVV 96

Query: 83  AHSVVSWKNSKPQTGLMAAAREARYAL-ISEHAKTINATLIMTAHTFD 129
            H   S +           +R A  A+ + E  +      +M     D
Sbjct: 97  GHVEDSIEKGTVVLRKETDSRNAAQAVTLLETIEANGFDALMGGARRD 144


>gi|221135471|ref|ZP_03561774.1| regulator protein [Glaciecola sp. HTCC2999]
          Length = 210

 Score = 39.5 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 31 DSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHSVVSWK 90
          DS  LL      + D+     + +A++ ++   +    EV +   VC  L I H VV   
Sbjct: 2  DSFTLLH----HILDQGLAVNEIAALTFNYG--QKHVKEVEFARRVCEALGIQHKVVDIS 55

Query: 91 N 91
           
Sbjct: 56 A 56


>gi|242278556|ref|YP_002990685.1| asparagine synthase (glutamine-hydrolyzing) [Desulfovibrio
           salexigens DSM 2638]
 gi|242121450|gb|ACS79146.1| asparagine synthase (glutamine-hydrolyzing) [Desulfovibrio
           salexigens DSM 2638]
          Length = 623

 Score = 39.5 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 11/104 (10%)

Query: 1   MFLSPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH 60
           +    +E+ R  + S V    +L   SGG DS  L++AL +    +S             
Sbjct: 237 LHSRLLEATRIRLESDVPLGALL---SGGVDS-SLVVALMAEAGSKSIDTFTI------- 285

Query: 61  CLRETAKDEVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAARE 104
              E   DE  + + V   L + H V     ++ +  L A  R+
Sbjct: 286 GFHEKKYDESGHAAKVAKHLGVNHHVEYLDPTQFENMLPAVVRQ 329


>gi|39995758|ref|NP_951709.1| NAD synthetase [Geobacter sulfurreducens PCA]
 gi|39982522|gb|AAR33982.1| NAD+ synthetase [Geobacter sulfurreducens PCA]
 gi|298504768|gb|ADI83491.1| NAD+ synthetase [Geobacter sulfurreducens KN400]
          Length = 273

 Score = 39.5 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 51/128 (39%), Gaps = 24/128 (18%)

Query: 12  FVRSLVYPAHI---LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLR-ETAK 67
           F+R  V+   +   ++ +SGG DS     AL + L+  + G     AI + +      + 
Sbjct: 18  FLREEVHKVGVRKAVLGLSGGIDS-----ALVAFLAAEALGPDNVHAIIMPYRTSNPES- 71

Query: 68  DEVRYVSDVCSRLRIAHSVV-----------SWKNSKPQTGLMAAAREARYALISEHAKT 116
               +   V  +L I H V+            + ++         ARE R  ++ +H+  
Sbjct: 72  --EAHARLVAEQLGINHEVIEITPMVDAYFTRFPDADNMRRGNKMARE-RMTILYDHSAA 128

Query: 117 INATLIMT 124
           + A ++ T
Sbjct: 129 LGALVLGT 136


>gi|283956194|ref|ZP_06373679.1| putative transcriptional regulatory protein [Campylobacter jejuni
          subsp. jejuni 1336]
 gi|283792348|gb|EFC31132.1| putative transcriptional regulatory protein [Campylobacter jejuni
          subsp. jejuni 1336]
          Length = 224

 Score = 39.5 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
          +SGG DS      L + L+ +     +  A+  D+  R   K+   +   +C  L++ 
Sbjct: 9  ISGGMDST-----LCAYLAKKE--GYEIIALHFDYEQRTQEKERECF-KQICKALKVE 58


>gi|182677746|ref|YP_001831892.1| NAD synthetase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633629|gb|ACB94403.1| NAD+ synthetase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 557

 Score = 39.5 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 10/82 (12%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL-RETAK 67
           +R +V  + +P  +++ +SGG DS     AL + L+  + G+ K  A+ + +    + + 
Sbjct: 281 LRDYVEKIGFPG-VVLGLSGGVDS-----ALCAALAVDALGREKVHAVMLPYRYTSQESL 334

Query: 68  DEVRYVSDVCSRLRIAHSVVSW 89
            + +      + L + + +V  
Sbjct: 335 IDAKAC---ATALGLRYDIVPI 353


>gi|157414337|ref|YP_001481593.1| putative transcriptional regulatory protein [Campylobacter jejuni
          subsp. jejuni 81116]
 gi|166218758|sp|A8FJH9|QUEC_CAMJ8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|157385301|gb|ABV51616.1| putative transcriptional regulatory protein [Campylobacter jejuni
          subsp. jejuni 81116]
 gi|315931290|gb|EFV10259.1| 7-cyano-7-deazaguanine synthase [Campylobacter jejuni subsp.
          jejuni 327]
          Length = 224

 Score = 39.5 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 8/58 (13%)

Query: 26 VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIA 83
          +SGG DS      L + L+ +     +  A+  D+  R   K+   +   +C  L++ 
Sbjct: 9  ISGGMDST-----LCAYLAKKE--GYEIIALHFDYEQRTQEKERECF-KQICKALKVE 58


>gi|50287423|ref|XP_446141.1| hypothetical protein [Candida glabrata CBS 138]
 gi|74610356|sp|Q6FUF3|GUAA_CANGA RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|49525448|emb|CAG59065.1| unnamed protein product [Candida glabrata]
          Length = 525

 Score = 39.5 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 13  VRSLVYP-AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEV 70
           +R LV P A ++ AVSGG DS      +   + DR      F AI VD+  LR     E 
Sbjct: 216 IRDLVGPTAEVIGAVSGGVDSTVASKLMTEAIGDR------FHAILVDNGVLRLN---EA 266

Query: 71  RYVSD-VCSRLRIAHSVVSWKNS 92
             V   +   L I  +VV   + 
Sbjct: 267 ATVKKTLVDGLGINLTVVDAADE 289


>gi|322372130|ref|ZP_08046671.1| amino acid permease-associated region [Haladaptatus paucihalophilus
           DX253]
 gi|320548139|gb|EFW89812.1| amino acid permease-associated region [Haladaptatus paucihalophilus
           DX253]
          Length = 741

 Score = 39.5 bits (91), Expect = 1.00,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 31/129 (24%)

Query: 19  PAHILV--AVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISV-DHCLRETAKDEVRYVSD 75
           P  +LV  A  GG DS         + ++      + S + V D    E+      +++D
Sbjct: 610 PGRVLVPTA--GGPDSELSAAIAQMLQAEYDS---ELSLLHVTD----ESRDAGEEFLAD 660

Query: 76  VCSRLRIA-HSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAHTFDDQLET 134
             +   I   ++V   +   +  +  AA               + +L++   T     E 
Sbjct: 661 WATEHGIEDANLVVVDDEDVEAAIERAA--------------GDCSLLVIGATE----EG 702

Query: 135 VYMRSQRDY 143
           +  R  R  
Sbjct: 703 LLSRLVRGS 711


>gi|331671990|ref|ZP_08372786.1| ExsB protein [Escherichia coli TA280]
 gi|331070979|gb|EGI42338.1| ExsB protein [Escherichia coli TA280]
          Length = 231

 Score = 39.5 bits (91), Expect = 1.00,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|194333159|ref|YP_002015019.1| GMP synthase [Prosthecochloris aestuarii DSM 271]
 gi|194310977|gb|ACF45372.1| GMP synthase, large subunit [Prosthecochloris aestuarii DSM 271]
          Length = 518

 Score = 39.5 bits (91), Expect = 1.00,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 22/186 (11%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           +R     A ++  +SGG DS    + +   +  +         + V++  LR+    E  
Sbjct: 219 IRKTAGNATVICGISGGVDSTVAAVLVSKAIGKK------LHCVFVNNGLLRKN---EGE 269

Query: 72  YVSDVCSRLRIAHSVVS-----WKNSKPQTGLMAAAREARYALISEHAKTINATLIMTAH 126
            V  +   L +  ++V       K  K         +      I    + I+    +   
Sbjct: 270 KVMSILKPLGLNITMVDAEEIFLKRLKSVASPEKKRKIIGRTFIHIFEEQIHEEKFLVQG 329

Query: 127 TF-DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQRN 185
           T   D +E+V ++   +  +    + G+       + L +  P     ++++R+   +  
Sbjct: 330 TLYPDVIESVSVKGPSETIKSHHNVGGL----PKRMKLKLIEPLRELFKDEVRAVGRELG 385

Query: 186 ISWCED 191
           I   ED
Sbjct: 386 ID--ED 389


>gi|145356777|ref|XP_001422602.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582845|gb|ABP00919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 389

 Score = 39.5 bits (91), Expect = 1.00,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 52/190 (27%), Gaps = 34/190 (17%)

Query: 23  LVAVSGGSDSMGLLIALHSVLSD------RSFGKIKFSAIS-VDHCLRETAKDEVRYVSD 75
           +V +SGG DS     AL    +       R++      A +   H      +D+++    
Sbjct: 17  VVGLSGGVDSAVAAWALERCGARATATLMRNWDARDEDAATDCSH------RDDLKSARA 70

Query: 76  VCSRLRIA-----------HSVVSWKNSKPQTG------LMAAAREARYALISEHAKTIN 118
           +  +L +            H V        ++G      L    R    AL+    + + 
Sbjct: 71  IAEKLNLRFIESDFTREYWHEVFEPYVEAFESGATPNPDLECNRRVKFGALLRRAMEDLG 130

Query: 119 ATLIMTAHTF---DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRE 175
              + T H      D  E    R  R   +       +       L      P     + 
Sbjct: 131 GRYLATGHYARIDRDVDEGAPPRLLRGIDQTKDQSYFLASVRGEALRSACF-PLGAVFKS 189

Query: 176 DIRSFLLQRN 185
           + R       
Sbjct: 190 ETREAARILG 199


>gi|153208935|ref|ZP_01947148.1| GMP synthase [Coxiella burnetii 'MSU Goat Q177']
 gi|165924007|ref|ZP_02219839.1| GMP synthase [Coxiella burnetii RSA 334]
 gi|212218751|ref|YP_002305538.1| GMP synthase [Coxiella burnetii CbuK_Q154]
 gi|226738429|sp|B6J7Z4|GUAA_COXB1 RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|120575593|gb|EAX32217.1| GMP synthase [Coxiella burnetii 'MSU Goat Q177']
 gi|165916552|gb|EDR35156.1| GMP synthase [Coxiella burnetii RSA 334]
 gi|212013013|gb|ACJ20393.1| GMP synthase (glutamine-hydrolyzing) [Coxiella burnetii CbuK_Q154]
          Length = 524

 Score = 39.5 bits (91), Expect = 1.00,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 93/288 (32%), Gaps = 38/288 (13%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVR 71
           ++  V    ++V +SGG DS      +   + D      +   + VD   LR    DEV 
Sbjct: 221 IQEKVGKEQVIVGLSGGVDSAVTATLVRKAIGD------QLVCVLVDTGLLRLNEVDEVL 274

Query: 72  YVSDVCSRLRIAHSVVSWKNS-----KPQTGLMAAAREARYAL---ISEHAKTINATLIM 123
            V      L      V  K+      K  +      + A         E AK +N   + 
Sbjct: 275 NVFQ--KHLGAKVICVDAKDRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLG 332

Query: 124 TAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
               + D +E+   ++ + +  K          +  ++ L +  P     ++++R   L+
Sbjct: 333 QGTIYPDVIESAKTKTGKGHIIK---THHNVGGLPLNMELKLIEPLRELFKDEVRKLGLE 389

Query: 184 RNISWCEDPSNTDDRFER---------VRVRRFVRDIDLHALYLKMKKFQDLRVKVNNAV 234
             +         D  + R         +R+   V    ++ L      F +   K +   
Sbjct: 390 LGLP-------ADLIY-RHPFPGPGLAIRILGEVNAEYINILKQADAIFIEELKKSDYYH 441

Query: 235 AMLIPKYLTVHMRSIIAISQDILNIDSTLLFYLLRVSAAICGGQISLP 282
            +     + + ++S + +  D  +    +    ++    +      LP
Sbjct: 442 QVSQAFAVFMPLKS-VGVKGDARHYGYIIALRAVKTVDFMTAQWADLP 488


>gi|37520120|ref|NP_923497.1| tRNA-specific 2-thiouridylase MnmA [Gloeobacter violaceus PCC 7421]
 gi|73920124|sp|Q7MBC9|MNMA_GLOVI RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|35211112|dbj|BAC88492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
           [Gloeobacter violaceus PCC 7421]
          Length = 357

 Score = 39.5 bits (91), Expect = 1.00,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 54/197 (27%), Gaps = 47/197 (23%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA--KDEVRYVSDVCS 78
            I+ A+SGG DS      +            +   +++     + +   D ++  + VC 
Sbjct: 6   KIVAALSGGVDSSVAAALVRK-------QGYRVCGVTLWLMRGKGSCCSDGMKDAARVCE 58

Query: 79  RLRIAHSVVSWKNSKPQTGLMAAAREARYA-----------------LISEHAKTINATL 121
           +L I H +V  +    +T +       R                   L+    + +    
Sbjct: 59  QLDIPHHIVDIRQQFEETIVDFLVEGYREGITPLPCSRCNKELKFGLLLEYARRKLGIGT 118

Query: 122 IMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWI-----------SRPFL 170
           + T H                  + G            D + ++             P  
Sbjct: 119 VATGH----------YARTGFDGQTGRHWLARAVDRTKDQSYFLYDLSQEQLASAVFPLG 168

Query: 171 RCRREDIRSFLLQRNIS 187
              ++  R+   +  +S
Sbjct: 169 EMTKDQTRTLAAELGLS 185


>gi|197116761|ref|YP_002137188.1| adenosine nucleotide alpha-hydrolase superfamily protein [Geobacter
           bemidjiensis Bem]
 gi|197086121|gb|ACH37392.1| adenosine nucleotide alpha-hydrolase superfamily protein [Geobacter
           bemidjiensis Bem]
          Length = 268

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 53/183 (28%), Gaps = 42/183 (22%)

Query: 20  AHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA----KDEVRYVSD 75
             +LVA SGG DS  LL A        + G  +  A++       T+    + E+     
Sbjct: 19  GSLLVAFSGGVDSTFLLKAAFD-----TLGAERVLAVT------ATSPTYPESELAEAKR 67

Query: 76  VCSRLRIAHS-VVSWKNSKPQ-----TGLMAAAREARYALISEHAKTINATLIMTAHTFD 129
           + +R+      VVS +   P             +   + + +E A+      +      D
Sbjct: 68  LATRIGARQELVVSNELEIPGFRHNPKDRCYHCKSELFRICTEKARDNGFAFVADGSNTD 127

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL--RCRREDIRSFLLQRNIS 187
           D                   L            L +  P L     + DIR       + 
Sbjct: 128 D-------------------LGDYRPGRTAACELKVRSPLLEAGLSKGDIRELSRGLGLP 168

Query: 188 WCE 190
             +
Sbjct: 169 TWD 171


>gi|154248919|ref|YP_001409744.1| GMP synthase [Fervidobacterium nodosum Rt17-B1]
 gi|154152855|gb|ABS60087.1| GMP synthase, large subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 522

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 28/184 (15%)

Query: 19  PAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRETAKDEVRYVSDVC 77
              +++ +SGG DS  + + LH  + D+           VD   LR+    EV  V    
Sbjct: 221 DGRVILGLSGGVDSSVVAMLLHKAVPDKFIPIF------VDTGLLRKNECIEV--VKQF- 271

Query: 78  SRLRIAHSVVSWKNSKPQT--GLMA-AAREAR---------YALISEHAKTIN-ATLIMT 124
             + I    V       +   G+     +  R         Y    +  +       +  
Sbjct: 272 EEIGIHIHYVDASEKFLEVLDGVEDPEEKRKRIGHTFIDVFYEEAMKLKEKYGDIKYLAQ 331

Query: 125 AHTFDDQLET-VYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLLQ 183
              + D +E+ V  R      +    + G+ + + ++    I  P     ++++R    +
Sbjct: 332 GTLYPDIIESKVAERKAGAKIKTHHNVGGLPEKLPFE----IIEPLRYLFKDEVRMLGQE 387

Query: 184 RNIS 187
             + 
Sbjct: 388 IGLP 391


>gi|320176589|gb|EFW51633.1| Queuosine Biosynthesis QueC ATPase [Shigella dysenteriae CDC
          74-1112]
          Length = 231

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|209542792|ref|YP_002275021.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530469|gb|ACI50406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 361

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 49/159 (30%), Gaps = 31/159 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAK-------DEVRYV 73
            I+VA+SGG DS  +   L +   +     ++       +  RE+A+        ++   
Sbjct: 2   RIMVAMSGGVDSSVVAARLVAEGHEVVGATLQL------YDSRESARKGACCAGRDIHDA 55

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALIS----EHAKTINATLIMTAHTFD 129
             V  RL I H V+  +    Q+ +   A    YA         A               
Sbjct: 56  RRVADRLGIPHYVIDAETRFRQSVIETFADA--YAGGETPVPCVACNQGVKF-------- 105

Query: 130 DQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRP 168
               T  +   RD   + M        I       + RP
Sbjct: 106 ----TDLLGMARDLGAEAMATGHYVRRIEGPDGAELHRP 140


>gi|212704994|ref|ZP_03313122.1| hypothetical protein DESPIG_03062 [Desulfovibrio piger ATCC 29098]
 gi|212671546|gb|EEB32029.1| hypothetical protein DESPIG_03062 [Desulfovibrio piger ATCC 29098]
          Length = 387

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 41/152 (26%), Gaps = 56/152 (36%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL------------------ 62
            + VAVSGG DS+  L+ L     ++    +        H L                  
Sbjct: 3   QLAVAVSGGVDSLCALLRL----REQGHDVLAL------HGLFLPDAASSGPCPAPEGPR 52

Query: 63  ------------RETAKDEVRYVSDVCSRLRIAHSV---------------VSWKNSKPQ 95
                          ++  V  +   C +L I   V               V        
Sbjct: 53  LLTAAEALAAPLPPASRQAVEGLQTACGQLGIPLHVADMRAVFDREVVTPFVRAYARGRT 112

Query: 96  TGLMAAA-REARYALISEHAKTINATLIMTAH 126
               A   R  ++  + + A ++ A  I T H
Sbjct: 113 PNPCALCNRAIKFGALLDTALSLGADRIATGH 144


>gi|81428404|ref|YP_395404.1| hypothetical protein LSA0790 [Lactobacillus sakei subsp. sakei 23K]
 gi|61396667|gb|AAX46037.1| Lsa790 [Lactobacillus sakei]
 gi|78610046|emb|CAI55094.1| Hypothetical protein, ATP utilizing enzyme PP-loop family
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 278

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 21/135 (15%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETA 66
           E       +L     ++VA SGG DS  +L          + GK    A+         +
Sbjct: 6   EKKAMLAANLQQMKKVIVAFSGGIDSTLVLKMALE-----TLGKENVLAVV------ANS 54

Query: 67  ----KDEVRYVSDVCSRLR--IAHSVVSWKNSKPQTGLMAAAR----EARYALISEHAKT 116
                +E     D+   +   +  + +++ + +              +  Y  +++ A  
Sbjct: 55  ELFTDEEFNKAIDLAHEMGANVEATTLNYLSDEHIANNTPETWYYSKKMFYTQLNQIAAE 114

Query: 117 INATLIMTAHTFDDQ 131
                ++     DD 
Sbjct: 115 KGFDHVLDGMIMDDN 129


>gi|167824128|ref|ZP_02455599.1| argininosuccinate synthase [Burkholderia pseudomallei 9]
 gi|167910874|ref|ZP_02497965.1| argininosuccinate synthase [Burkholderia pseudomallei 112]
 gi|226197489|ref|ZP_03793066.1| argininosuccinate synthase [Burkholderia pseudomallei Pakistan 9]
 gi|254297620|ref|ZP_04965073.1| argininosuccinate synthase [Burkholderia pseudomallei 406e]
 gi|157807086|gb|EDO84256.1| argininosuccinate synthase [Burkholderia pseudomallei 406e]
 gi|225930868|gb|EEH26878.1| argininosuccinate synthase [Burkholderia pseudomallei Pakistan 9]
          Length = 404

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 47/191 (24%)

Query: 18  YPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
            P HIL+A SGG D S  L   L      +     + +A   +   +E   D  R     
Sbjct: 2   KPKHILLAYSGGLDTSTAL-HFL------KRHFDCRVTAYCANLGQKE---DWERM-KRR 50

Query: 77  CSRLRIAHSVVS-----------WKNSKPQTGLMA-------AAREARYALISEHAKTIN 118
            +       V+            +   K               AR A    + E+A+  +
Sbjct: 51  AAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLARPAIVKGLIEYARKHD 110

Query: 119 ATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              +    T   +DQ+     R +         L  +    ++ L            RED
Sbjct: 111 VDCLSHGCTQKGNDQV-----RFEMAAKILAPDLPTVAPWRIWSLQ----------SRED 155

Query: 177 IRSFLLQRNIS 187
           + ++  Q  I 
Sbjct: 156 LFAYCQQHGIP 166


>gi|167738526|ref|ZP_02411300.1| argininosuccinate synthase [Burkholderia pseudomallei 14]
 gi|217421838|ref|ZP_03453342.1| argininosuccinate synthase [Burkholderia pseudomallei 576]
 gi|254188831|ref|ZP_04895342.1| argininosuccinate synthase [Burkholderia pseudomallei Pasteur
           52237]
 gi|157936510|gb|EDO92180.1| argininosuccinate synthase [Burkholderia pseudomallei Pasteur
           52237]
 gi|217395580|gb|EEC35598.1| argininosuccinate synthase [Burkholderia pseudomallei 576]
          Length = 404

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 47/191 (24%)

Query: 18  YPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
            P HIL+A SGG D S  L   L      +     + +A   +   +E   D  R     
Sbjct: 2   KPKHILLAYSGGLDTSTAL-HFL------KRHFDCRVTAYCANLGQKE---DWERM-KRR 50

Query: 77  CSRLRIAHSVVS-----------WKNSKPQTGLMA-------AAREARYALISEHAKTIN 118
            +       V+            +   K               AR A    + E+A+  +
Sbjct: 51  AAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLARPAIVKGLIEYARKHD 110

Query: 119 ATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              +    T   +DQ+     R +         L  +    ++ L            RED
Sbjct: 111 VDCLSHGCTQKGNDQV-----RFEMAAKILAPDLPTVAPWRIWSLQ----------SRED 155

Query: 177 IRSFLLQRNIS 187
           + ++  Q  I 
Sbjct: 156 LFAYCQQHGIP 166


>gi|330445417|ref|ZP_08309069.1| 7-cyano-7-deazaguanine synthase [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
 gi|328489608|dbj|GAA03566.1| 7-cyano-7-deazaguanine synthase [Photobacterium leiognathi subsp.
          mandapamensis svers.1.1.]
          Length = 232

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   I+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLIQALAHYD--------EVHCITFDYGQRH--KLEIEVAEAIAKDL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|90579979|ref|ZP_01235787.1| putative exsB protein [Vibrio angustum S14]
 gi|90438864|gb|EAS64047.1| putative exsB protein [Vibrio angustum S14]
          Length = 231

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   I+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLIQALAHYD--------EVHCITFDYGQRH--KLEIEVAEAIAKDL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|34498962|ref|NP_903177.1| hypothetical protein CV_3507 [Chromobacterium violaceum ATCC
          12472]
 gi|81654693|sp|Q7NSB9|QUEC_CHRVO RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|34104811|gb|AAQ61168.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
          12472]
          Length = 234

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          LV +SGG DS   L       + R FG  K  A++ D+  R   + E+     + +   +
Sbjct: 10 LVVLSGGQDSTTCLY-----WALRRFGAGKVEAVTFDYGQRH--RVELDCARKIAALAGV 62

Query: 83 AHSVVSWK 90
            +V+   
Sbjct: 63 RQTVLPID 70


>gi|89073465|ref|ZP_01159988.1| putative exsB protein [Photobacterium sp. SKA34]
 gi|89050729|gb|EAR56210.1| putative exsB protein [Photobacterium sp. SKA34]
          Length = 231

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   I+ D+  R   K E+     +   L
Sbjct: 5  VVV-FSGGQDSTTCLIQALAHYD--------EVHCITFDYGQRH--KLEIEVAEAIAKDL 53

Query: 81 RI-AHSVVSW 89
           + AH V+  
Sbjct: 54 GVTAHKVMDV 63


>gi|320162464|ref|YP_004175689.1| hypothetical protein ANT_30630 [Anaerolinea thermophila UNI-1]
 gi|319996318|dbj|BAJ65089.1| hypothetical protein ANT_30630 [Anaerolinea thermophila UNI-1]
          Length = 271

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 83/247 (33%), Gaps = 47/247 (19%)

Query: 7   ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRE-- 64
           E ++     L      +VA SGG DS  +  A + VL +R+   +  +A+       E  
Sbjct: 4   EKIQRLFEILAELDSAIVAFSGGVDSTLVAAAAYRVLGERA---VAITAV------SESL 54

Query: 65  -TAKDEVRYVSDVCSRLRIAHSVVS---WKNSKPQTG---LMAAAREARYALISEHAKTI 117
             ++ E      +   + I H ++     ++ + +          +    AL++ +A+  
Sbjct: 55  AESEREETLA--LARHIGIRHVLIHSHELQDERYRANSPMRCYWCKNELGALLAAYARQH 112

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDI 177
           + + I+     DD                 +G        + +             + D+
Sbjct: 113 HYSAILDGSNLDD-----------------LGDVRPGRKAMQEAGFRSPLIEAGMTKADV 155

Query: 178 RSFLLQRNISWCEDPSNTDDRFERVRV-------RRFVRDIDLHALYLKMKKFQDLRVKV 230
           R       +   + P+         R+       R  +R ++    +L+    + +R++ 
Sbjct: 156 REAARLLGLPNWDKPAMACLA---SRIPFGMQVTRENLRQVEQGEAFLRSLGLRQVRLRH 212

Query: 231 NNAVAML 237
           +  VA L
Sbjct: 213 HGRVARL 219


>gi|170680140|ref|YP_001742588.1| queuosine biosynthesis protein QueC [Escherichia coli SMS-3-5]
 gi|300937061|ref|ZP_07151927.1| ExsB protein [Escherichia coli MS 21-1]
 gi|254764344|sp|B1LJK1|QUEC_ECOSM RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|170517858|gb|ACB16036.1| queuosine biosynthesis protein QueC [Escherichia coli SMS-3-5]
 gi|300457892|gb|EFK21385.1| ExsB protein [Escherichia coli MS 21-1]
          Length = 231

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|26246455|ref|NP_752494.1| queuosine biosynthesis protein QueC [Escherichia coli CFT073]
 gi|91209518|ref|YP_539504.1| queuosine biosynthesis protein QueC [Escherichia coli UTI89]
 gi|110640705|ref|YP_668433.1| queuosine biosynthesis protein QueC [Escherichia coli 536]
 gi|117622704|ref|YP_851617.1| queuosine biosynthesis protein QueC [Escherichia coli APEC O1]
 gi|191173679|ref|ZP_03035203.1| queuosine biosynthesis protein QueC [Escherichia coli F11]
 gi|194435436|ref|ZP_03067614.1| queuosine biosynthesis protein QueC [Shigella dysenteriae 1012]
 gi|218557354|ref|YP_002390267.1| queuosine biosynthesis protein QueC [Escherichia coli S88]
 gi|218688308|ref|YP_002396520.1| queuosine biosynthesis protein QueC [Escherichia coli ED1a]
 gi|218698644|ref|YP_002406273.1| queuosine biosynthesis protein QueC [Escherichia coli IAI39]
 gi|218703728|ref|YP_002411247.1| queuosine biosynthesis protein QueC [Escherichia coli UMN026]
 gi|227884545|ref|ZP_04002350.1| transcriptional regulator [Escherichia coli 83972]
 gi|237707561|ref|ZP_04538042.1| queuosine biosynthesis protein queC [Escherichia sp. 3_2_53FAA]
 gi|293403565|ref|ZP_06647656.1| queuosine biosynthesis protein QueC [Escherichia coli FVEC1412]
 gi|293413699|ref|ZP_06656348.1| exsB protein [Escherichia coli B185]
 gi|298379177|ref|ZP_06989058.1| queuosine biosynthesis protein QueC [Escherichia coli FVEC1302]
 gi|300900515|ref|ZP_07118682.1| ExsB protein [Escherichia coli MS 198-1]
 gi|300987956|ref|ZP_07178472.1| ExsB protein [Escherichia coli MS 45-1]
 gi|300997367|ref|ZP_07181707.1| ExsB protein [Escherichia coli MS 200-1]
 gi|301049651|ref|ZP_07196600.1| ExsB protein [Escherichia coli MS 185-1]
 gi|306813088|ref|ZP_07447281.1| queuosine biosynthesis protein QueC [Escherichia coli NC101]
 gi|331645629|ref|ZP_08346732.1| ExsB protein [Escherichia coli M605]
 gi|331656501|ref|ZP_08357463.1| ExsB protein [Escherichia coli TA206]
 gi|331661825|ref|ZP_08362748.1| ExsB protein [Escherichia coli TA143]
 gi|331681839|ref|ZP_08382472.1| ExsB protein [Escherichia coli H299]
 gi|81478067|sp|Q8FKA4|QUEC_ECOL6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|110816225|sp|Q1RF91|QUEC_ECOUT RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|118574284|sp|Q0TKJ7|QUEC_ECOL5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|167016427|sp|A1A8B3|QUEC_ECOK1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764335|sp|B7MDA3|QUEC_ECO45 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764338|sp|B7NJ50|QUEC_ECO7I RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764339|sp|B7MQG0|QUEC_ECO81 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|254764342|sp|B7N8Z8|QUEC_ECOLU RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|26106853|gb|AAN79038.1|AE016756_221 Hypothetical protein ybaX [Escherichia coli CFT073]
 gi|91071092|gb|ABE05973.1| hypothetical protein YbaX [Escherichia coli UTI89]
 gi|110342297|gb|ABG68534.1| putative (aluminum) resistance protein [Escherichia coli 536]
 gi|115511828|gb|ABI99902.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|190906037|gb|EDV65652.1| queuosine biosynthesis protein QueC [Escherichia coli F11]
 gi|194416322|gb|EDX32513.1| queuosine biosynthesis protein QueC [Shigella dysenteriae 1012]
 gi|218364123|emb|CAR01788.1| queuosine biosynthesis protein [Escherichia coli S88]
 gi|218368630|emb|CAR16369.1| queuosine biosynthesis protein [Escherichia coli IAI39]
 gi|218425872|emb|CAR06678.1| queuosine biosynthesis protein [Escherichia coli ED1a]
 gi|218430825|emb|CAR11699.1| queuosine biosynthesis protein [Escherichia coli UMN026]
 gi|222032239|emb|CAP74978.1| Queuosine biosynthesis protein queC [Escherichia coli LF82]
 gi|226898771|gb|EEH85030.1| queuosine biosynthesis protein queC [Escherichia sp. 3_2_53FAA]
 gi|227838631|gb|EEJ49097.1| transcriptional regulator [Escherichia coli 83972]
 gi|284920254|emb|CBG33313.1| queuosine biosynthesis protein [Escherichia coli 042]
 gi|291429418|gb|EFF02438.1| queuosine biosynthesis protein QueC [Escherichia coli FVEC1412]
 gi|291433757|gb|EFF06730.1| exsB protein [Escherichia coli B185]
 gi|294490301|gb|ADE89057.1| queuosine biosynthesis protein QueC [Escherichia coli IHE3034]
 gi|298280290|gb|EFI21794.1| queuosine biosynthesis protein QueC [Escherichia coli FVEC1302]
 gi|300298588|gb|EFJ54973.1| ExsB protein [Escherichia coli MS 185-1]
 gi|300304186|gb|EFJ58706.1| ExsB protein [Escherichia coli MS 200-1]
 gi|300355996|gb|EFJ71866.1| ExsB protein [Escherichia coli MS 198-1]
 gi|300407626|gb|EFJ91164.1| ExsB protein [Escherichia coli MS 45-1]
 gi|305853851|gb|EFM54290.1| queuosine biosynthesis protein QueC [Escherichia coli NC101]
 gi|307552351|gb|ADN45126.1| queuosine biosynthesis protein QueC [Escherichia coli ABU 83972]
 gi|307628086|gb|ADN72390.1| queuosine biosynthesis protein QueC [Escherichia coli UM146]
 gi|312945022|gb|ADR25849.1| queuosine biosynthesis protein QueC [Escherichia coli O83:H1 str.
          NRG 857C]
 gi|315289838|gb|EFU49228.1| ExsB protein [Escherichia coli MS 110-3]
 gi|315294222|gb|EFU53573.1| ExsB protein [Escherichia coli MS 153-1]
 gi|315299543|gb|EFU58791.1| ExsB protein [Escherichia coli MS 16-3]
 gi|320178274|gb|EFW53248.1| Queuosine Biosynthesis QueC ATPase [Shigella boydii ATCC 9905]
 gi|320197082|gb|EFW71701.1| Queuosine Biosynthesis QueC ATPase [Escherichia coli WV_060327]
 gi|323191364|gb|EFZ76627.1| queuosine biosynthesis protein queC [Escherichia coli RN587/1]
 gi|323952944|gb|EGB48812.1| exsB protein [Escherichia coli H252]
 gi|323958637|gb|EGB54340.1| exsB protein [Escherichia coli H263]
 gi|324010075|gb|EGB79294.1| ExsB protein [Escherichia coli MS 57-2]
 gi|324010658|gb|EGB79877.1| ExsB protein [Escherichia coli MS 60-1]
 gi|330910238|gb|EGH38748.1| queuosine Biosynthesis QueC ATPase [Escherichia coli AA86]
 gi|331044381|gb|EGI16508.1| ExsB protein [Escherichia coli M605]
 gi|331054749|gb|EGI26758.1| ExsB protein [Escherichia coli TA206]
 gi|331060247|gb|EGI32211.1| ExsB protein [Escherichia coli TA143]
 gi|331081041|gb|EGI52206.1| ExsB protein [Escherichia coli H299]
 gi|332085803|gb|EGI90967.1| queuosine biosynthesis protein queC [Shigella dysenteriae 155-74]
 gi|332094600|gb|EGI99646.1| queuosine biosynthesis protein queC [Shigella boydii 5216-82]
          Length = 231

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|310817790|ref|YP_003950148.1| penicillin-binding protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390862|gb|ADO68321.1| penicillin-binding protein [Stigmatella aurantiaca DW4/3-1]
          Length = 604

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 18/192 (9%)

Query: 246 MRSIIAISQDILNIDSTLLFYLLRVSAAICG-GQISLPGYRSME--RVMLFLKSGKRGCV 302
           +R  +A                LR+ ++    G+I      ++   R +  L+      V
Sbjct: 36  LRGQVAEPPAHFEEHHRRFQSELRILSSRFELGRIERQDESAVASFRAIHLLQGLGEWEV 95

Query: 303 SIGRVVIDRRANFLWIT---------RAVRNLPTLILYPEETTVWDGRYQFQNLSDSLIQ 353
                ++ R+  +             R           PE   + DGR Q       +I 
Sbjct: 96  DGTLRLVRRKGRWWVRWTPAVLHPEAREGSRFSRTRTRPERAPLLDGRGQPLTHEGDVIA 155

Query: 354 IGPQSYRKADVPSGIPPIIAQRALSSMPSKEG---GKPLLAPFSRFMTKFDLPVAYAFSI 410
           IG +  R  ++ +       Q  L   P++       P +AP  RF+   D+       +
Sbjct: 156 IGVEPRRIQNLSA--VASALQSHLGVEPARVQKALNAPGVAP-ERFLPLIDVRPERYQQV 212

Query: 411 SFGKVFIPRLPF 422
                 +P + F
Sbjct: 213 RPALAPVPGIFF 224


>gi|299133610|ref|ZP_07026804.1| NAD+ synthetase [Afipia sp. 1NLS2]
 gi|298591446|gb|EFI51647.1| NAD+ synthetase [Afipia sp. 1NLS2]
          Length = 584

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 16/88 (18%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFG---KIKFSAISVDHCLRE 64
           +R +V    +P  +L+ +SGG DS + L IA+ ++  +R  G     +F+A        +
Sbjct: 283 LRDYVGKNGFPG-VLLGISGGIDSALCLAIAVDAIGVERVRGVMLPFRFTA--------K 333

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
            + ++    + +   L I + V+    +
Sbjct: 334 ESIEDA---ARIARGLGIRYDVLPIAAA 358


>gi|89891429|ref|ZP_01202935.1| GMP synthase [Flavobacteria bacterium BBFL7]
 gi|89516460|gb|EAS19121.1| GMP synthase [Flavobacteria bacterium BBFL7]
          Length = 511

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E     ++  V    +++ +SGG DS    + LH  + +          I V++ L
Sbjct: 201 VEETVEALQEKVGNDKVVLGLSGGVDSSVAAMLLHKAIGE------NLYCIFVNNGL 251


>gi|88801179|ref|ZP_01116722.1| argininosuccinate synthase [Reinekea sp. MED297]
 gi|88776082|gb|EAR07314.1| argininosuccinate synthase [Reinekea sp. MED297]
          Length = 406

 Score = 39.5 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 47/189 (24%)

Query: 20  AHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCS 78
             +++A SGG D S+        +        + F+A   D        +EV        
Sbjct: 5   KKVVLAYSGGLDTSV----IAKWIAETYDCEVVTFTA---DLGQ----GEEVEPARAKAQ 53

Query: 79  RLRI-AHSVVSWKNS----------KPQTGLMAA-------AREARYALISEHAKTINAT 120
            L I    +   +            +  T            AR      + E A    A 
Sbjct: 54  ALGIKEIYIEDLREEFVRDYVYPMFRANTVYEGEYLLGTSIARPLIAKRLIEIANETGAD 113

Query: 121 LIMTAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIR 178
            I    T   +DQ+     R +        G+  +     +DL            RE + 
Sbjct: 114 AIAHGATGKGNDQV-----RFELGAYALKPGVKVIAPWREWDL----------TSREKLM 158

Query: 179 SFLLQRNIS 187
           ++  + +I 
Sbjct: 159 AYCEEHSIP 167


>gi|332290686|ref|YP_004429295.1| GMP synthase, large subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168772|gb|AEE18027.1| GMP synthase, large subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 510

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +++ +    +++ +SGG DS      LH  +            I V++ L
Sbjct: 207 LKAKLGDDRVILGLSGGVDSTVAATLLHKAIGR------NLYCIFVNNGL 250


>gi|209885642|ref|YP_002289499.1| glutamine-dependent NAD(+) synthetase [Oligotropha carboxidovorans
           OM5]
 gi|209873838|gb|ACI93634.1| glutamine-dependent NAD(+) synthetase [Oligotropha carboxidovorans
           OM5]
          Length = 584

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 16/88 (18%)

Query: 9   VRFFVRSLVYPAHILVAVSGGSDS-MGLLIALHSVLSDRSFG---KIKFSAISVDHCLRE 64
           +R +V    +P  +L+ +SGG DS + L IA+ ++  +R  G     +F+A        +
Sbjct: 283 LRDYVGKNGFPG-VLLGISGGIDSALCLAIAVDAIGVERVRGVMLPYRFTA--------K 333

Query: 65  TAKDEVRYVSDVCSRLRIAHSVVSWKNS 92
            + ++    + +     I + V+    +
Sbjct: 334 ESIEDA---ARIARAFGIRYEVLPIAAA 358


>gi|167719548|ref|ZP_02402784.1| argininosuccinate synthase [Burkholderia pseudomallei DM98]
          Length = 404

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 47/191 (24%)

Query: 18  YPAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDV 76
            P HIL+A SGG D S  L   L      +     + +A   +   +E   D  R     
Sbjct: 2   KPKHILLAYSGGLDTSTAL-HFL------KRHFDCRVTAYCANLGQKE---DWERM-KRR 50

Query: 77  CSRLRIAHSVVS-----------WKNSKPQTGLMA-------AAREARYALISEHAKTIN 118
            +       V+            +   K               AR A    + E+A+  +
Sbjct: 51  AAIAGADELVIEDLRETFIGDFVFPALKANASYERDYLLGTPLARPAIVKGLIEYARKHD 110

Query: 119 ATLIMTAHTF--DDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
              +    T   +DQ+     R +         L  +    ++ L            RED
Sbjct: 111 VDCLSHGCTQKGNDQV-----RFEMAAKILAPDLPTVAPWRIWSLQ----------SRED 155

Query: 177 IRSFLLQRNIS 187
           + ++  Q  I 
Sbjct: 156 LFAYCQQHGIP 166


>gi|33519975|ref|NP_878807.1| GMP synthase [Candidatus Blochmannia floridanus]
 gi|44887941|sp|Q7VRS2|GUAA_BLOFL RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName:
           Full=GMP synthetase; AltName: Full=Glutamine
           amidotransferase
 gi|33504321|emb|CAD83213.1| GMP synthase (glutamine-hydrolyzing) [Candidatus Blochmannia
           floridanus]
          Length = 526

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           ++ +V    +++A SGG DS+   + L   ++       +F  + V++ L
Sbjct: 222 IKKVVGQDRVVLAFSGGIDSLVTALLLKYAIN-----HEQFVCVFVNNGL 266


>gi|319954143|ref|YP_004165410.1| gmp synthase (glutamine-hydrolyzing) [Cellulophaga algicola DSM
           14237]
 gi|319422803|gb|ADV49912.1| GMP synthase (glutamine-hydrolyzing) [Cellulophaga algicola DSM
           14237]
          Length = 510

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           S +E+    +++ +    +++ +SGG DS    + LH  +            I V++ L
Sbjct: 198 SFVETTVADLKAKIGTDKVILGLSGGVDSSVAAMLLHKAIGK------NLHCIFVNNGL 250


>gi|308477123|ref|XP_003100776.1| hypothetical protein CRE_15493 [Caenorhabditis remanei]
 gi|308264588|gb|EFP08541.1| hypothetical protein CRE_15493 [Caenorhabditis remanei]
          Length = 493

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 1   MFLSPI-ESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVD 59
           M L  + E+ +  +R+    +H+ V +SGG DS  +   +H+ ++     +I    +++ 
Sbjct: 183 MLLEKVTEATKVLLRNYTR-SHVAVCLSGGVDSTFIAHVVHASVA----PEICIDLVNIA 237

Query: 60  HCLRE 64
               E
Sbjct: 238 FGNSE 242


>gi|219723002|ref|YP_002474384.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           [Borrelia garinii Far04]
 gi|219694690|gb|ACL35208.1| GMP synthase [glutamine-hydrolyzing] (Glutamineamidotransferase)
           [Borrelia garinii Far04]
          Length = 511

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 66/194 (34%), Gaps = 27/194 (13%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE++   ++  V    +++ +SGG+DS+   + +   + +       F  + V+   LR+
Sbjct: 202 IETIVKKIKLKVGSKKVILGLSGGTDSLVCALLIKKAIKE------NFICVFVNTGLLRK 255

Query: 65  TAKD---EVRYVSDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARY-------ALISEH- 113
                  E+++       L I +   S K       +     E R         +  +  
Sbjct: 256 NEDKKILELKH--QY--DLNIKYIDASEKFLNHLKNISDP-EEKRKIIGKEFVNVFEKIT 310

Query: 114 AKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCR 173
            +  N   +     + D +E+      ++ A   +        +   + L +  P     
Sbjct: 311 LEDQNIEYLAQGTIYSDVIES----KSKNNASSKIKSHHNVGGLPDKMRLKLLEPLNEFF 366

Query: 174 REDIRSFLLQRNIS 187
           +++I    +   I 
Sbjct: 367 KDEIIQIGINLGIK 380


>gi|332521164|ref|ZP_08397622.1| GMP synthase, large subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332043257|gb|EGI79454.1| GMP synthase, large subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 517

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL 62
           +E     +++ +    +++ +SGG DS    + LH  + +          I V++ L
Sbjct: 207 VEETVEALQAKIGNDKVVLGLSGGVDSSVAAMLLHKAIGE------NLYCIFVNNGL 257


>gi|218549888|ref|YP_002383679.1| queuosine biosynthesis protein QueC [Escherichia fergusonii ATCC
          35469]
 gi|254764346|sp|B7LMD5|QUEC_ESCF3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|218357429|emb|CAQ90068.1| queuosine biosynthesis protein [Escherichia fergusonii ATCC
          35469]
 gi|323976071|gb|EGB71164.1| exsB protein [Escherichia coli TW10509]
 gi|325498265|gb|EGC96124.1| queuosine biosynthesis protein QueC [Escherichia fergusonii
          ECD227]
          Length = 231

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|187736368|ref|YP_001878480.1| exsB protein [Akkermansia muciniphila ATCC BAA-835]
 gi|187426420|gb|ACD05699.1| exsB protein [Akkermansia muciniphila ATCC BAA-835]
          Length = 223

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 37/186 (19%)

Query: 26  VSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRIAHS 85
           +SGG DS   L   H     R        A+S D+     A+ E++  +   + L I H 
Sbjct: 10  LSGGLDSSVALHWAHRNHRVR-------VALSFDYA-SNHAERELKCAAWQAASLGIEHR 61

Query: 86  VVSWK--NSKPQTGLMAAARE-----------------ARYALI----SEHAKTINATLI 122
           V+     +S  ++ L++ A +                  R  +     +  A++  A  +
Sbjct: 62  VIDISSISSHLKSALLSGADDIPDGSYDEELMKQTVVPFRNGIFLSIAAGVAESCGAQQL 121

Query: 123 MTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRREDIRSFLL 182
           + A    D           D  E+ M        +     L I RPF+   +  I +   
Sbjct: 122 VIAAHSGD------HSIYPDCREEFMAAMTEAIRLGTYAGLGILRPFIHMSKGGIAAMGQ 175

Query: 183 QRNISW 188
              + +
Sbjct: 176 DLGVDF 181


>gi|24213033|ref|NP_710514.1| PP-loop superfamily ATPase [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45656192|ref|YP_000278.1| hypothetical protein LIC10288 [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|81407974|sp|Q72VK9|QUEC_LEPIC RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|81471975|sp|Q8F964|QUEC_LEPIN RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|24193722|gb|AAN47532.1| PP-loop superfamily ATPase [Leptospira interrogans serovar Lai
          str. 56601]
 gi|45599426|gb|AAS68915.1| conserved hypothetical protein [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 242

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 23 LVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRLRI 82
          +V +SGG DS   L               +  A+S D+  R   K E+ Y   V  +L I
Sbjct: 29 VVLLSGGLDSTTCLY-------QAIADGKEIQALSFDYGQRH--KIELSYAKKVTRKLGI 79

Query: 83 AHSVVSWK 90
           H++   K
Sbjct: 80 PHTIQKLK 87


>gi|15606187|ref|NP_213564.1| trans-regulatory protein ExsB [Aquifex aeolicus VF5]
 gi|81343542|sp|O67003|QUEC_AQUAE RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|2983380|gb|AAC06966.1| trans-regulatory protein ExsB [Aquifex aeolicus VF5]
          Length = 218

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 16 LVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSD 75
          +     I+V +SGG DS  LL               K  AIS D+  R   K E++Y  +
Sbjct: 1  MKKHDGIIVLLSGGMDSATLLWLAKREFK-------KVYAISFDYGQRH--KVELKYAKE 51

Query: 76 VCSRLRIA-HSVVSW 89
          +     +  H +V  
Sbjct: 52 LAKLAEVEDHFIVQV 66


>gi|325295219|ref|YP_004281733.1| Argininosuccinate synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065667|gb|ADY73674.1| Argininosuccinate synthase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 402

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 54/205 (26%), Gaps = 49/205 (23%)

Query: 19  PAHILVAVSGGSD-SMGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVS--- 74
              +++A SGG D S+     +   L+DR F  I ++A   D    E   +         
Sbjct: 2   GKRVVLAYSGGLDTSV-----IVRWLADRGFEVITYTA---DVGQGEELGEIEEKAKKAG 53

Query: 75  -----------DVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKTINATLIM 123
                      +      +               L A +R      + E A    A  + 
Sbjct: 54  AVEAIIDDIKEEFAREYCLPLMRAGALYEGKYPLLSALSRPLIAKKLVEVAHQKGADYVA 113

Query: 124 TAHT--FDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRC---RREDIR 178
              T   +DQ+                           D ++ +  P        R++  
Sbjct: 114 HGSTGKGNDQV------------------RFEASVWALDPDIEVLAPVREWEFKSRDEEI 155

Query: 179 SFLLQRNISWCEDPSNTDD-RFERV 202
            +  +  I      +      ++R 
Sbjct: 156 EYAKKHGIPVI--ATKEKPYSYDRN 178


>gi|300782713|ref|YP_003763004.1| GMP synthase (glutamine-hydrolysing) [Amycolatopsis mediterranei
           U32]
 gi|299792227|gb|ADJ42602.1| GMP synthase (glutamine-hydrolysing) [Amycolatopsis mediterranei
           U32]
          Length = 518

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 63/197 (31%), Gaps = 26/197 (13%)

Query: 4   SPIESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-L 62
           S +E     +   +     +  +SGG DS     A+ + L  R+ G  + + + VDH  L
Sbjct: 203 SIVEEQVQRISDQIGDGRAICGLSGGVDS-----AVAAALVQRAIGD-RLTCVFVDHGLL 256

Query: 63  RETAKDEVRYVSDVCSRLRIAHSVVSWK---------NSKPQTGLMAAAREARY---ALI 110
           R   + +V    D  S   +    +  +          + P+       RE         
Sbjct: 257 RAGERTQVE--QDFVSATGVNLVTIDARQRFLDALAGVTDPEQKRKIIGREFIRVFEQAE 314

Query: 111 SEHAKTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFL 170
            +     +   ++    + D +E+             +        +  DL   +  P  
Sbjct: 315 RDLKAQGDYKFLVQGTLYPDVVES-----GGGEGTANIKSHHNVGGLPDDLQFELVEPLR 369

Query: 171 RCRREDIRSFLLQRNIS 187
              ++++R   L+  + 
Sbjct: 370 LLFKDEVRRVGLELGLP 386


>gi|215485525|ref|YP_002327956.1| queuosine biosynthesis protein QueC [Escherichia coli O127:H6
          str. E2348/69]
 gi|254764334|sp|B7UJR7|QUEC_ECO27 RecName: Full=7-cyano-7-deazaguanine synthase; AltName:
          Full=7-cyano-7-carbaguanine synthase; AltName:
          Full=PreQ(0) synthase; AltName: Full=Queuosine
          biosynthesis protein queC
 gi|215263597|emb|CAS07927.1| predicted aluminum resistance protein [Escherichia coli O127:H6
          str. E2348/69]
          Length = 231

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 22 ILVAVSGGSDS-MGLLIALHSVLSDRSFGKIKFSAISVDHCLRETAKDEVRYVSDVCSRL 80
          ++V  SGG DS   L+ AL            +   ++ D+  R  A+ +V    ++  +L
Sbjct: 5  VVV-FSGGQDSTTCLVQALQQYD--------EVHCVTFDYGQRHRAEIDVA--RELALKL 53

Query: 81 RI-AHSVVSW 89
             AH V+  
Sbjct: 54 GARAHKVLDV 63


>gi|126434444|ref|YP_001070135.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. JLS]
 gi|166235066|sp|A3PXL7|MNMA_MYCSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|126234244|gb|ABN97644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. JLS]
          Length = 359

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 62/206 (30%), Gaps = 40/206 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAK-----DEVRYV 73
            +LVA+SGG DS      +     D     +  SA   +    LR  ++     ++    
Sbjct: 2   RVLVAMSGGVDSSVAAARMVDAGHDVVGVHLALSATPGT----LRTGSRGCCSKEDAGDA 57

Query: 74  SDVCSRLRIAHSVVSWKNSKPQTGLMA-AAREAR---------------YALISEHAKTI 117
             V   L I   V  + +   +  +    A   R               ++ ++  A  +
Sbjct: 58  RRVADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALAL 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCR 173
               + T H           R       + +        +L  L     R    P     
Sbjct: 118 GFDALATGHYA---------RLSDGRLRRAVDADKDQSYVLAVLTAQQLRHAVFPIGDTP 168

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRF 199
           +  IR+   +R ++  + P + D  F
Sbjct: 169 KAQIRAEAAERGLAVADKPDSHDICF 194


>gi|108798844|ref|YP_639041.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. MCS]
 gi|119867959|ref|YP_937911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. KMS]
 gi|123179026|sp|Q1BAU9|MNMA_MYCSS RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|166235067|sp|A1UE63|MNMA_MYCSK RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|108769263|gb|ABG07985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. MCS]
 gi|119694048|gb|ABL91121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Mycobacterium sp. KMS]
          Length = 359

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 40/206 (19%)

Query: 21  HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAI--SVDHCLRETAK-----DEVRYV 73
            +LVA+SGG DS      +     D     +  SA   +    LR  ++     ++    
Sbjct: 2   RVLVAMSGGVDSSVAAARMVDAGHDVVGVHLALSATPGT----LRTGSRGCCSKEDAGDA 57

Query: 74  SDVCSRLRIAHSV---------------VSWKNSKPQTGLMAAA-REARYALISEHAKTI 117
             V   L I   V               V+                + +++ ++  A  +
Sbjct: 58  RRVADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALAL 117

Query: 118 NATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISR----PFLRCR 173
               + T H           R       + +        +L  L     R    P     
Sbjct: 118 GFDALATGHYA---------RLSDGRLRRAVDADKDQSYVLAVLTAQQLRHAVFPIGDTP 168

Query: 174 REDIRSFLLQRNISWCEDPSNTDDRF 199
           +  IR+   +R ++  + P + D  F
Sbjct: 169 KAQIRAEAAERGLAVADKPDSHDICF 194


>gi|86157907|ref|YP_464692.1| tRNA-specific 2-thiouridylase MnmA [Anaeromyxobacter dehalogenans
          2CP-C]
 gi|123497474|sp|Q2IHX6|MNMA_ANADE RecName: Full=tRNA-specific 2-thiouridylase mnmA
 gi|85774418|gb|ABC81255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 351

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 21 HILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDH-----CLRETAKDEVRYVSD 75
           ILVA+SGG DS      L           +       D+          A D+V     
Sbjct: 2  RILVAMSGGVDSSTAAALLA--GEGHEVIGVTMRVA--DYSDAARGRSCCAPDDVEDARA 57

Query: 76 VCSRLRIAHSVVSWKNSKPQ 95
             RL I   V + +    +
Sbjct: 58 AARRLGIPFYVANVEARFRE 77


>gi|253582187|ref|ZP_04859410.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           varium ATCC 27725]
 gi|251835726|gb|EES64264.1| bifunctional GMP synthase/glutamine amidotransferase [Fusobacterium
           varium ATCC 27725]
          Length = 512

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 68/202 (33%), Gaps = 33/202 (16%)

Query: 6   IESVRFFVRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHC-LRE 64
           IE     ++  V    +L+ +SGG DS      +H  + D      + + I VD   LR 
Sbjct: 202 IEETVKNIKETVGDKKVLLGLSGGVDSSVAATLIHKAIGD------QLTCIFVDTGLLR- 254

Query: 65  TAKDEVRYVSD-VCSRLRIAHSVVSWKN---------SKPQTGLMAAAREARYALISEHA 114
             KDE + V +       +    +  ++         S P+T      +E       E  
Sbjct: 255 --KDEAKKVMEVYGENFHMNIKCIDAEDRFLTKLAGVSDPETKRKIIGKEFIEVFDEEAK 312

Query: 115 KTINATLIMTAHTFDDQLETVYMRSQRDYAEKGMGL----SGMCDTILYDLNLWISRPFL 170
           K  +   +     + D +E++        + KG  +          +  D+   +  P  
Sbjct: 313 KIKDVEFLAQGTIYPDVIESM--------SVKGPSMTIKSHHNVGGLPEDMKFKLLEPLR 364

Query: 171 RCRREDIRSFLLQRNIS-WCED 191
              ++++R    +  I     D
Sbjct: 365 ELFKDEVRKVGRELGIPDHMID 386


>gi|326333082|ref|ZP_08199331.1| GMP synthase (Glutamine amidotransferase) [Nocardioidaceae
           bacterium Broad-1]
 gi|325949065|gb|EGD41156.1| GMP synthase (Glutamine amidotransferase) [Nocardioidaceae
           bacterium Broad-1]
          Length = 524

 Score = 39.5 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 55/191 (28%), Gaps = 30/191 (15%)

Query: 13  VRSLVYPAHILVAVSGGSDSMGLLIALHSVLSDRSFGKIKFSAISVDHCL---------- 62
           VR  +     + A+SGG DS        +          + + + VDH L          
Sbjct: 216 VREQIGDHRAICALSGGVDS------AVAAAIVAKAIGDRLTCVYVDHGLMRKNESVAIE 269

Query: 63  ---RETAKDEVRYV---SDVCSRLRIAHSVVSWKNSKPQTGLMAAAREARYALISEHAKT 116
              RE+   E++ V    +    L     V   +  +   G        R  +       
Sbjct: 270 KAFRESTGAELKIVDAEKEFLDAL---AGVTDPEEKRKIIGREFIRCFERAEVEILGDSD 326

Query: 117 INATLIMTAHTFDDQLETVYMRSQRDYAEKGMGLSGMCDTILYDLNLWISRPFLRCRRED 176
                ++    + D +E+             +        +  DL   +  P     +++
Sbjct: 327 EKVAFLVQGTLYPDVVES-----GGGAGTSNIKSHHNVGGLPEDLEFELVEPLRELFKDE 381

Query: 177 IRSFLLQRNIS 187
           +R+   Q  + 
Sbjct: 382 VRAVGSQLGLP 392


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.313    0.149    0.444 

Lambda     K      H
   0.267   0.0458    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,737,434,145
Number of Sequences: 14124377
Number of extensions: 330365212
Number of successful extensions: 1395160
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 7077
Number of HSP's successfully gapped in prelim test: 7868
Number of HSP's that attempted gapping in prelim test: 1361501
Number of HSP's gapped (non-prelim): 17748
length of query: 423
length of database: 4,842,793,630
effective HSP length: 142
effective length of query: 281
effective length of database: 2,837,132,096
effective search space: 797234118976
effective search space used: 797234118976
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 83 (36.4 bits)